Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: scaffold46
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 327967
ACGTcount: A:0.22, C:0.28, G:0.28, T:0.22
Warning! 1 characters in sequence are not A, C, G, or T
File 1 of 2
Found at i:2192 original size:18 final size:18
Alignment explanation
Indices: 2150--2193 Score: 63
Period size: 18 Copynumber: 2.5 Consensus size: 18
2140 ACCAATGGCT
2150 GGTGG-GCTGGTTGCAGC
1 GGTGGTGCTGGTTGCAGC
**
2167 GGACGTGCTGGTTGCAGC
1 GGTGGTGCTGGTTGCAGC
2185 GGTGGTGCT
1 GGTGGTGCT
2194 AAAACAGCGG
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
17 3 0.14
18 19 0.86
ACGTcount: A:0.07, C:0.18, G:0.50, T:0.25
Consensus pattern (18 bp):
GGTGGTGCTGGTTGCAGC
Left flanking sequence: Indices 1650 -- 2149
CTGTCAGTCTTGATCGCCAGCGAGACGATAGCTTTGTGAGTTGCACTGGATTCCACGGTCTCCAA
AAAATCCAAACATACACTGTGTTGGCTCTATACCTGGTTATGTATCTTACCTAACACGGTAGCCA
TCTAAAGCCATGTAACTATGGGTAAACCTCAATAGGTTCACAAACTACTTTTCAGGATATTGCTA
CACTATATAAAATAGAGCCTCGCGACTATTGAGACTCCCATCTAACTCATAACCGTATTTCGTAC
CCTTCGATCTGAGTCAGAATCCACCATGGCGAAAAAGACAAATAAAATACCAACAGTGCCTTTGG
CCCCTGGCCTCTGCCCCTGACCTCGGCTCGCAACACTCTTCATTCTAGTCGTAGATTGTCTATAC
ATTACAAAAACGCCATTGATCCAGTCGATTCTGGTTCAGCTTCCCCCAGTCGATCCTGGTTTATT
CTCCGAGTCAGCCGTTGAAGCGATCGGAATGGAGGACCAATGGCT
Right flanking sequence: Indices 2194 -- 2693
AAAACAGCGGTGGTGGTGGTTGCAAGCAATGCTACTGGTTAGCGGTGGTGCTGGCTCCACAGCGG
TCAACGTTAATCACGAAATGACCACCAACAAAATTGAACACCAACAAAAACAAATACCAACAAAA
ACGACCACCAACGAAATGACCACCAACAAAAATGACCACCAACTAAATTTACCACCAACGAGAAT
AACCACCACCAATCCAACGCTGGTGGCCCACTAGCACACTAAAAAAATGCTCAGCAGCCATCTGA
AATACTGGCTCAGCAGCCATCTAAAACAATAAAAACCATAGCCTCGCTCTAGTCTCGCTCTCACC
CATAGCCTCTTAACCATACCCTGCTTCTATCCTTCCCCTAACTCTCATATCTCACGTACAACGCA
TCGATAAAGTGCGGGTGCTTGATCCCCGGGGGCTTGGCCACGGCAAAAGCGTCCAACGCCTCCGC
CACCGACCACCCCATCCGCTCCACCAAGTACGCACAGCAGCAGAA
Found at i:2302 original size:16 final size:16
Alignment explanation
Indices: 2274--2396 Score: 113
Period size: 16 Copynumber: 7.8 Consensus size: 16
2264 GTTAATCACG
2274 AAATGACCACCAACAA
1 AAATGACCACCAACAA
* *
2290 AATTGAACACCAACAA
1 AAATGACCACCAACAA
** **
2306 AAACAAATACCAACAA
1 AAATGACCACCAACAA
* *
2322 AAACGACCACCAAC-G
1 AAATGACCACCAACAA
2337 AAATGACCACCAACAA
1 AAATGACCACCAACAA
*
2353 AAATGACCACCAACTA
1 AAATGACCACCAACAA
* * *
2369 AATTTACCACCAACGA
1 AAATGACCACCAACAA
* *
2385 GAATAACCACCA
1 AAATGACCACCA
2397 CCAATCCAAC
Statistics
Matches: 87, Mismatches: 19, Indels: 2
0.81 0.18 0.02
Matches are distributed among these distances:
15 13 0.15
16 74 0.85
ACGTcount: A:0.54, C:0.31, G:0.07, T:0.09
Consensus pattern (16 bp):
AAATGACCACCAACAA
Left flanking sequence: Indices 1774 -- 2273
TAGCCATCTAAAGCCATGTAACTATGGGTAAACCTCAATAGGTTCACAAACTACTTTTCAGGATA
TTGCTACACTATATAAAATAGAGCCTCGCGACTATTGAGACTCCCATCTAACTCATAACCGTATT
TCGTACCCTTCGATCTGAGTCAGAATCCACCATGGCGAAAAAGACAAATAAAATACCAACAGTGC
CTTTGGCCCCTGGCCTCTGCCCCTGACCTCGGCTCGCAACACTCTTCATTCTAGTCGTAGATTGT
CTATACATTACAAAAACGCCATTGATCCAGTCGATTCTGGTTCAGCTTCCCCCAGTCGATCCTGG
TTTATTCTCCGAGTCAGCCGTTGAAGCGATCGGAATGGAGGACCAATGGCTGGTGGGCTGGTTGC
AGCGGACGTGCTGGTTGCAGCGGTGGTGCTAAAACAGCGGTGGTGGTGGTTGCAAGCAATGCTAC
TGGTTAGCGGTGGTGCTGGCTCCACAGCGGTCAACGTTAATCACG
Right flanking sequence: Indices 2397 -- 2896
CCAATCCAACGCTGGTGGCCCACTAGCACACTAAAAAAATGCTCAGCAGCCATCTGAAATACTGG
CTCAGCAGCCATCTAAAACAATAAAAACCATAGCCTCGCTCTAGTCTCGCTCTCACCCATAGCCT
CTTAACCATACCCTGCTTCTATCCTTCCCCTAACTCTCATATCTCACGTACAACGCATCGATAAA
GTGCGGGTGCTTGATCCCCGGGGGCTTGGCCACGGCAAAAGCGTCCAACGCCTCCGCCACCGACC
ACCCCATCCGCTCCACCAAGTACGCACAGCAGCAGAAGATCGTCCGGTTCTGCCCGTAGTGGCAG
TGCACGCCAATCATCGGCTGGTCCACCGTGGTCTCCTCGAGCACCTTGTCGACACAGGCGATAAA
CCGGCGGATCGCCCCGGTGTCGGGCACCACCTTCAGCACCGTGGGGCACTTGAAGTACTGCACCC
GGTCAAACAGGCTCGGCTGGTACACGGGGACGTCGCTGGAGATGT
Found at i:2381 original size:63 final size:66
Alignment explanation
Indices: 2271--2400 Score: 158
Period size: 63 Copynumber: 2.0 Consensus size: 66
2261 AACGTTAATC
* * *
2271 ACGAAATGACCACCAACAAAATTGAACACCAACAAAAACAAATACCAAC-A-AA-AACGACCACC
1 ACGAAATGACCACCAACAAAAATGAACACCAACAAAAACAAACACCAACGAGAATAACCACCACC
2333 A
66 A
* * *** *
2334 ACGAAATGACCACCAACAAAAATGACCACCAACTAAATTTACCACCAACGAGAATAACCACCACC
1 ACGAAATGACCACCAACAAAAATGAACACCAACAAAAACAAACACCAACGAGAATAACCACCACC
2399 A
66 A
2400 A
1 A
2401 TCCAACGCTG
Statistics
Matches: 55, Mismatches: 9, Indels: 3
0.82 0.13 0.04
Matches are distributed among these distances:
63 41 0.75
64 1 0.02
65 2 0.04
66 11 0.20
ACGTcount: A:0.53, C:0.32, G:0.07, T:0.08
Consensus pattern (66 bp):
ACGAAATGACCACCAACAAAAATGAACACCAACAAAAACAAACACCAACGAGAATAACCACCACC
A
Left flanking sequence: Indices 1771 -- 2270
CGGTAGCCATCTAAAGCCATGTAACTATGGGTAAACCTCAATAGGTTCACAAACTACTTTTCAGG
ATATTGCTACACTATATAAAATAGAGCCTCGCGACTATTGAGACTCCCATCTAACTCATAACCGT
ATTTCGTACCCTTCGATCTGAGTCAGAATCCACCATGGCGAAAAAGACAAATAAAATACCAACAG
TGCCTTTGGCCCCTGGCCTCTGCCCCTGACCTCGGCTCGCAACACTCTTCATTCTAGTCGTAGAT
TGTCTATACATTACAAAAACGCCATTGATCCAGTCGATTCTGGTTCAGCTTCCCCCAGTCGATCC
TGGTTTATTCTCCGAGTCAGCCGTTGAAGCGATCGGAATGGAGGACCAATGGCTGGTGGGCTGGT
TGCAGCGGACGTGCTGGTTGCAGCGGTGGTGCTAAAACAGCGGTGGTGGTGGTTGCAAGCAATGC
TACTGGTTAGCGGTGGTGCTGGCTCCACAGCGGTCAACGTTAATC
Right flanking sequence: Indices 2401 -- 2900
TCCAACGCTGGTGGCCCACTAGCACACTAAAAAAATGCTCAGCAGCCATCTGAAATACTGGCTCA
GCAGCCATCTAAAACAATAAAAACCATAGCCTCGCTCTAGTCTCGCTCTCACCCATAGCCTCTTA
ACCATACCCTGCTTCTATCCTTCCCCTAACTCTCATATCTCACGTACAACGCATCGATAAAGTGC
GGGTGCTTGATCCCCGGGGGCTTGGCCACGGCAAAAGCGTCCAACGCCTCCGCCACCGACCACCC
CATCCGCTCCACCAAGTACGCACAGCAGCAGAAGATCGTCCGGTTCTGCCCGTAGTGGCAGTGCA
CGCCAATCATCGGCTGGTCCACCGTGGTCTCCTCGAGCACCTTGTCGACACAGGCGATAAACCGG
CGGATCGCCCCGGTGTCGGGCACCACCTTCAGCACCGTGGGGCACTTGAAGTACTGCACCCGGTC
AAACAGGCTCGGCTGGTACACGGGGACGTCGCTGGAGATGTCCAC
Found at i:3888 original size:21 final size:21
Alignment explanation
Indices: 3863--3915 Score: 97
Period size: 21 Copynumber: 2.5 Consensus size: 21
3853 GATTCCTTGA
3863 CCACACCACGGGCGTCCAGGG
1 CCACACCACGGGCGTCCAGGG
*
3884 CCACACCACGAGCGTCCAGGG
1 CCACACCACGGGCGTCCAGGG
3905 CCACACCACGG
1 CCACACCACGG
3916 CCTCCAGACT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.23, C:0.45, G:0.28, T:0.04
Consensus pattern (21 bp):
CCACACCACGGGCGTCCAGGG
Left flanking sequence: Indices 3363 -- 3862
CACCAACGTTTTTTGGTTGGTGGTGGTCGGGGTGGTCCCGGTGTCGTTGTAGAGGCGCACCGCCT
CCGAGAGGTCGTCGAGGGTGGCCCGGTGGAACCCGAGCACGTAGCGAAGCACCACCGGGGAGGCC
ACGTCCAAGTTCCAGCGGAACTGGCGGAGCCGGGCCACTTGCGAGGCCCGGGGGGTGAGCTGGCG
GGTCACCAGGTGGGAGTCGAGCCCGCGGAGGCGGTCCCAGACCCGGAAGAGGTCGAAGAGGCGGG
GGAAACGGGCAAAGAAGCGGAGCAGGGGGGGAACGGCGGGGGGAGAAGGGGGAGAACGGGAGGAA
GAGACGGTCTGGGAAGGAGAAACGGTCTGAGAAGCTGGCAAAGTGTTTTTCTTGTCTGTTGAGCC
TGTGGTTTGGCCACCAGCCCGGCCCGTGGTGGTCCCGGTGGTTTCCTTCCCAGAGGAGGGCTCCT
CCAAGTTGAGAGGGTCAGAGGTGCCCAGCACGGTGGATTCCTTGA
Right flanking sequence: Indices 3916 -- 4415
CCTCCAGACTCTCCCCTTCCCAACCCGGGAGGCGACAACAACACCATCCCCTCCACCGAGCCCGC
CTCAAGCACCCGCGCAAGCTTCACCACCAAGTGGGTGCCCATCAGGTGCCCCACAAGCACCACCT
TCCGCCCCGGGGCCACCTGGCCGAGCCACCGCCGCAAGAGCTCCACCAAATTGTCGGTCTCATAG
TCGCTCCACGCCATGGCCCGCCAGCTGGCGTCCACCCGGGCCTGCTCCTCGTCGCTCATCTCGAC
AATCAGCTTCCCCCGGGCCCGTCTCAGATTGCCAAACCCGGGCAAGTCGATGGCCCGCACCTCCG
AGCACTGGGAAAGGAGGCCCATGAGCGGCTCGAAATTGGCCATCTGGCCGCCGAGCCCGTGGACA
AACACAAACATCGGCAGCTCCGCCACCTCGGCCGCCAACTGGGCCACCTTGGCGTCGCCGGCCTT
CTTGACAAACTTGTAGAGCGGGTGCGGCATGTGCACCGTGTGCAC
Found at i:4423 original size:15 final size:15
Alignment explanation
Indices: 4403--4435 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
4393 TGCGGCATGT
*
4403 GCACCGTGTGCACCA
1 GCACCGTGGGCACCA
4418 GCACCGTGGGCACCA
1 GCACCGTGGGCACCA
4433 GCA
1 GCA
4436 TCGCGGTGCC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.21, C:0.39, G:0.30, T:0.09
Consensus pattern (15 bp):
GCACCGTGGGCACCA
Left flanking sequence: Indices 3903 -- 4402
GGCCACACCACGGCCTCCAGACTCTCCCCTTCCCAACCCGGGAGGCGACAACAACACCATCCCCT
CCACCGAGCCCGCCTCAAGCACCCGCGCAAGCTTCACCACCAAGTGGGTGCCCATCAGGTGCCCC
ACAAGCACCACCTTCCGCCCCGGGGCCACCTGGCCGAGCCACCGCCGCAAGAGCTCCACCAAATT
GTCGGTCTCATAGTCGCTCCACGCCATGGCCCGCCAGCTGGCGTCCACCCGGGCCTGCTCCTCGT
CGCTCATCTCGACAATCAGCTTCCCCCGGGCCCGTCTCAGATTGCCAAACCCGGGCAAGTCGATG
GCCCGCACCTCCGAGCACTGGGAAAGGAGGCCCATGAGCGGCTCGAAATTGGCCATCTGGCCGCC
GAGCCCGTGGACAAACACAAACATCGGCAGCTCCGCCACCTCGGCCGCCAACTGGGCCACCTTGG
CGTCGCCGGCCTTCTTGACAAACTTGTAGAGCGGGTGCGGCATGT
Right flanking sequence: Indices 4436 -- 4935
TCGCGGTGCCGCGCACATCCACGTCCACCACCACCGAGAACTTGGCCACGAGCAGGCAGTCGTTG
GGCTCGCGCAGCAACACGTAGTGCTCGAGCTGGTTGGGCTGGCGGAGAAGGGCCAACCGGGCCCA
TTCCGCCACCCGGCGGAGCCACAGCGCCAGGCGGCGGAGCTGGTCGCTCTGGAGCGCCGCGAGCC
TCGGGTCGGCCACGGCGCCGTGCTGGTGCAGCCTGGTCACGAGCAACTCGTGCTCGTCGTCGCTC
ATGTGTCGATGCACCCAGATGCACCCACGTGATGAACGTGGGGGAGGGGCCTGGAGGGAGGGAAG
AAGGGAAGAAGGGACAATAGAATTGGGTAAGTAGGAAGCATTGTGACTACAGTGACTACGGTGAC
TACATAGACATTACCCAATAACTACTCAGTGACTACTCAGTACTCAGTAACTACTTAGTACTTAT
GACCGTTCGCGAATACCTCTCGGTGCACAGCACCACTGTCTGTGC
Found at i:4871 original size:18 final size:18
Alignment explanation
Indices: 4848--4887 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
4838 ACCCAATAAC
*
4848 TACTCAGTGACTACTCAG
1 TACTCAGTAACTACTCAG
*
4866 TACTCAGTAACTACTTAG
1 TACTCAGTAACTACTCAG
4884 TACT
1 TACT
4888 TATGACCGTT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.30, C:0.25, G:0.12, T:0.33
Consensus pattern (18 bp):
TACTCAGTAACTACTCAG
Left flanking sequence: Indices 4348 -- 4847
GCCACCTTGGCGTCGCCGGCCTTCTTGACAAACTTGTAGAGCGGGTGCGGCATGTGCACCGTGTG
CACCAGCACCGTGGGCACCAGCATCGCGGTGCCGCGCACATCCACGTCCACCACCACCGAGAACT
TGGCCACGAGCAGGCAGTCGTTGGGCTCGCGCAGCAACACGTAGTGCTCGAGCTGGTTGGGCTGG
CGGAGAAGGGCCAACCGGGCCCATTCCGCCACCCGGCGGAGCCACAGCGCCAGGCGGCGGAGCTG
GTCGCTCTGGAGCGCCGCGAGCCTCGGGTCGGCCACGGCGCCGTGCTGGTGCAGCCTGGTCACGA
GCAACTCGTGCTCGTCGTCGCTCATGTGTCGATGCACCCAGATGCACCCACGTGATGAACGTGGG
GGAGGGGCCTGGAGGGAGGGAAGAAGGGAAGAAGGGACAATAGAATTGGGTAAGTAGGAAGCATT
GTGACTACAGTGACTACGGTGACTACATAGACATTACCCAATAAC
Right flanking sequence: Indices 4888 -- 5387
TATGACCGTTCGCGAATACCTCTCGGTGCACAGCACCACTGTCTGTGCCTGACGCGTCGGGCTGA
TCGCACCCCACGGTGTGCAGGCGCCACGTCAACCAAGCCACCGACACCCGAGCCGGCGACTGCGC
TGCCCGCTGGCCATCAATTGGCCGTCCACCACTCCTCTAGCCCAAAAACCACCCGTCCCCACACG
CTTTTCTCGCCGCTTCCCGCCTGCCTTGCTGTGCGCGCTGCACTTTTCGCACCTTTTCCACCACC
TCACCCACACCTCACTTCCTCCTCCTGACCCCGAGCCTGTGGGCATGTCGCGCTACCTGTTCCAG
TTTGACCTCGACGACGACTTGGACAGCTCGCTCGACCGGGCGTTGCTGTCGGTGCCCCACACCAT
GAAGCGCCAGACGCTGGCGCTGGCGGCGTCGTCAGAGGCCGCGACCCCCCGGTTGACCCGGGGCC
GCGCCAGCCTCGACAGCGAGCACGGCGTCCCCCTCTTGAACCGCT
Found at i:8498 original size:11 final size:11
Alignment explanation
Indices: 8482--8518 Score: 65
Period size: 11 Copynumber: 3.4 Consensus size: 11
8472 CGGGCGTGGA
*
8482 CACGAGACAGC
1 CACGAGACAAC
8493 CACGAGACAAC
1 CACGAGACAAC
8504 CACGAGACAAC
1 CACGAGACAAC
8515 CACG
1 CACG
8519 GGACCGAAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
11 25 1.00
ACGTcount: A:0.41, C:0.38, G:0.22, T:0.00
Consensus pattern (11 bp):
CACGAGACAAC
Left flanking sequence: Indices 7982 -- 8481
TTCTCGTTGACGTTGGACACCGACATCGACGAGCACTTGACGCGGTTGTACCCCGAGCTCTACCG
CGAGTTGACGCTTGGCAAGTCGCTCTCGGTGCGCACGTTCTTCATGTGGGTGCTCATCTCGCTCT
ACCAGGGGCTGGTGATCCAGTTGATGGCGCAGTACTTCCAGGGGTACGACGAGAAGAGCTTCAAG
ACGATGGTGGCGCTCTCGTACTCGCTCTTGATCGTCAACGAGTTGGTGATGGTGGGGCTCTCGAT
CAACCGGTGGACCAGGGTGATGGTGGCGACGGTGGTGGTGACGTTGGCGATCTACGTGGGGCTGG
TGCCCTTCTTGGGCGACTACTTTGACTTGGGCTACATGGCCCTGGTGGCGTTTGTGTGGCAGACG
GCGGTGATACTCGCGATCGCGTTGCTTCCGGTGTGGCTCGGGCGGTTTATCGACCGCAAGATCCG
GCCCCCGTCGTACGCGAAGGTGCAACAAGAGTAGGCGGGCGTGGA
Right flanking sequence: Indices 8519 -- 9018
GGACCGAAAAAAGGTACCAGAAGCGACCAAGCGAGATCTCGGCAAGAAAACAGAAAAGAGAAAAG
AGAAGAGAAAAAAGAATGGTTGCAAAAACGATAGGTTGCAAAAACGATAGGTTGCAAAGATATAG
GTTGCAAAATGACGGTTCTGTGTTTGACGTTCGTCTTTGTTGGGTGCTTCTTGTGATTTCTTCAG
TGGCTTCGGGTCTGCTTACCACGGCTGACCTTATCGCTGGTTACCGCCACACTAGCAACCATGCG
AGCATCAAGCCTGATTGCGACCTTGGCCACTCTAGCTATGCTATCCCACTGCTATCACTGCCTTC
CCTATTTCTACTACCCCATACTACCCCTTTTTACTATCCCTTTCTACTACCGCTTTCTACCTGTC
CCACTACCATTCCACCCAAAGCCTCCCAAAGCCTCCCATCGCTCCCCACCATCGCTCCCCACCCA
AATCAGGCGATTTATTTTTCCGAGAGTCCATGCGAGTAAAAAATG
Found at i:8626 original size:15 final size:16
Alignment explanation
Indices: 8601--8657 Score: 89
Period size: 16 Copynumber: 3.6 Consensus size: 16
8591 AAAAAAGAAT
8601 GGTTGCAAAAACGATA
1 GGTTGCAAAAACGATA
8617 GGTTGCAAAAACGATA
1 GGTTGCAAAAACGATA
* *
8633 GGTTGCAAAGA-TATA
1 GGTTGCAAAAACGATA
8648 GGTTGCAAAA
1 GGTTGCAAAA
8658 TGACGGTTCT
Statistics
Matches: 38, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
15 12 0.32
16 26 0.68
ACGTcount: A:0.42, C:0.11, G:0.26, T:0.21
Consensus pattern (16 bp):
GGTTGCAAAAACGATA
Left flanking sequence: Indices 8101 -- 8600
CATCTCGCTCTACCAGGGGCTGGTGATCCAGTTGATGGCGCAGTACTTCCAGGGGTACGACGAGA
AGAGCTTCAAGACGATGGTGGCGCTCTCGTACTCGCTCTTGATCGTCAACGAGTTGGTGATGGTG
GGGCTCTCGATCAACCGGTGGACCAGGGTGATGGTGGCGACGGTGGTGGTGACGTTGGCGATCTA
CGTGGGGCTGGTGCCCTTCTTGGGCGACTACTTTGACTTGGGCTACATGGCCCTGGTGGCGTTTG
TGTGGCAGACGGCGGTGATACTCGCGATCGCGTTGCTTCCGGTGTGGCTCGGGCGGTTTATCGAC
CGCAAGATCCGGCCCCCGTCGTACGCGAAGGTGCAACAAGAGTAGGCGGGCGTGGACACGAGACA
GCCACGAGACAACCACGAGACAACCACGGGACCGAAAAAAGGTACCAGAAGCGACCAAGCGAGAT
CTCGGCAAGAAAACAGAAAAGAGAAAAGAGAAGAGAAAAAAGAAT
Right flanking sequence: Indices 8658 -- 9157
TGACGGTTCTGTGTTTGACGTTCGTCTTTGTTGGGTGCTTCTTGTGATTTCTTCAGTGGCTTCGG
GTCTGCTTACCACGGCTGACCTTATCGCTGGTTACCGCCACACTAGCAACCATGCGAGCATCAAG
CCTGATTGCGACCTTGGCCACTCTAGCTATGCTATCCCACTGCTATCACTGCCTTCCCTATTTCT
ACTACCCCATACTACCCCTTTTTACTATCCCTTTCTACTACCGCTTTCTACCTGTCCCACTACCA
TTCCACCCAAAGCCTCCCAAAGCCTCCCATCGCTCCCCACCATCGCTCCCCACCCAAATCAGGCG
ATTTATTTTTCCGAGAGTCCATGCGAGTAAAAAATGAGTAACGCCGCGCGCTCGCAACCAGGGGC
CCACCGCCCTGCCAACGGGGAACCCCTGTTTGGCGGGCGAAACCCACCGGGAGCGGCCCCGGGAC
CCCCACGTACATAGATATTCAGTATCAAAGCATAGGTAACCAAAC
Found at i:8878 original size:13 final size:13
Alignment explanation
Indices: 8862--8903 Score: 57
Period size: 13 Copynumber: 3.2 Consensus size: 13
8852 TACTACCCCA
*
8862 TACTACCCCTTTT
1 TACTACCCCTTTC
*
8875 TACTATCCCTTTC
1 TACTACCCCTTTC
*
8888 TACTACCGCTTTC
1 TACTACCCCTTTC
8901 TAC
1 TAC
8904 CTGTCCCACT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.17, C:0.38, G:0.02, T:0.43
Consensus pattern (13 bp):
TACTACCCCTTTC
Left flanking sequence: Indices 8362 -- 8861
GTGGCAGACGGCGGTGATACTCGCGATCGCGTTGCTTCCGGTGTGGCTCGGGCGGTTTATCGACC
GCAAGATCCGGCCCCCGTCGTACGCGAAGGTGCAACAAGAGTAGGCGGGCGTGGACACGAGACAG
CCACGAGACAACCACGAGACAACCACGGGACCGAAAAAAGGTACCAGAAGCGACCAAGCGAGATC
TCGGCAAGAAAACAGAAAAGAGAAAAGAGAAGAGAAAAAAGAATGGTTGCAAAAACGATAGGTTG
CAAAAACGATAGGTTGCAAAGATATAGGTTGCAAAATGACGGTTCTGTGTTTGACGTTCGTCTTT
GTTGGGTGCTTCTTGTGATTTCTTCAGTGGCTTCGGGTCTGCTTACCACGGCTGACCTTATCGCT
GGTTACCGCCACACTAGCAACCATGCGAGCATCAAGCCTGATTGCGACCTTGGCCACTCTAGCTA
TGCTATCCCACTGCTATCACTGCCTTCCCTATTTCTACTACCCCA
Right flanking sequence: Indices 8904 -- 9403
CTGTCCCACTACCATTCCACCCAAAGCCTCCCAAAGCCTCCCATCGCTCCCCACCATCGCTCCCC
ACCCAAATCAGGCGATTTATTTTTCCGAGAGTCCATGCGAGTAAAAAATGAGTAACGCCGCGCGC
TCGCAACCAGGGGCCCACCGCCCTGCCAACGGGGAACCCCTGTTTGGCGGGCGAAACCCACCGGG
AGCGGCCCCGGGACCCCCACGTACATAGATATTCAGTATCAAAGCATAGGTAACCAAACTCCGGC
CCACTTTTCCCCATTGTCCGCCGCTTCGCCCACGTCTCGTAACCATTGTTGGGATCGCGTCGCGC
CACGGAGCCACAATGATGGGGCAATTATTACCTAATTACTAACCAGAAGTATAAAAGCCGTCGGG
TGCCCCGGTGACCCTAGTCACAATGAAAGCTGTTATTGGTAAATCCACCCTCATGTTAGCCTACT
TGGGCGTGTCGCTGACGGTCCCCTTCTTGTTGTCGTACCAAGAAA
Found at i:8962 original size:13 final size:13
Alignment explanation
Indices: 8944--8971 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
8934 CCAAAGCCTC
8944 CCATCGCTCCCCA
1 CCATCGCTCCCCA
8957 CCATCGCTCCCCA
1 CCATCGCTCCCCA
8970 CC
1 CC
8972 CAAATCAGGC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.14, C:0.64, G:0.07, T:0.14
Consensus pattern (13 bp):
CCATCGCTCCCCA
Left flanking sequence: Indices 8444 -- 8943
TCGTACGCGAAGGTGCAACAAGAGTAGGCGGGCGTGGACACGAGACAGCCACGAGACAACCACGA
GACAACCACGGGACCGAAAAAAGGTACCAGAAGCGACCAAGCGAGATCTCGGCAAGAAAACAGAA
AAGAGAAAAGAGAAGAGAAAAAAGAATGGTTGCAAAAACGATAGGTTGCAAAAACGATAGGTTGC
AAAGATATAGGTTGCAAAATGACGGTTCTGTGTTTGACGTTCGTCTTTGTTGGGTGCTTCTTGTG
ATTTCTTCAGTGGCTTCGGGTCTGCTTACCACGGCTGACCTTATCGCTGGTTACCGCCACACTAG
CAACCATGCGAGCATCAAGCCTGATTGCGACCTTGGCCACTCTAGCTATGCTATCCCACTGCTAT
CACTGCCTTCCCTATTTCTACTACCCCATACTACCCCTTTTTACTATCCCTTTCTACTACCGCTT
TCTACCTGTCCCACTACCATTCCACCCAAAGCCTCCCAAAGCCTC
Right flanking sequence: Indices 8972 -- 9471
CAAATCAGGCGATTTATTTTTCCGAGAGTCCATGCGAGTAAAAAATGAGTAACGCCGCGCGCTCG
CAACCAGGGGCCCACCGCCCTGCCAACGGGGAACCCCTGTTTGGCGGGCGAAACCCACCGGGAGC
GGCCCCGGGACCCCCACGTACATAGATATTCAGTATCAAAGCATAGGTAACCAAACTCCGGCCCA
CTTTTCCCCATTGTCCGCCGCTTCGCCCACGTCTCGTAACCATTGTTGGGATCGCGTCGCGCCAC
GGAGCCACAATGATGGGGCAATTATTACCTAATTACTAACCAGAAGTATAAAAGCCGTCGGGTGC
CCCGGTGACCCTAGTCACAATGAAAGCTGTTATTGGTAAATCCACCCTCATGTTAGCCTACTTGG
GCGTGTCGCTGACGGTCCCCTTCTTGTTGTCGTACCAAGAAACCCACATCGATCCCAAGATCAAG
GGGTTCGCCAACCCGCGGACGCTACTCGGCAAGGTTTAAGGTAAC
Found at i:9595 original size:17 final size:18
Alignment explanation
Indices: 9575--9645 Score: 101
Period size: 18 Copynumber: 4.0 Consensus size: 18
9565 GGTAGAAATG
9575 GTAAGAACCATATTG-TT
1 GTAAGAACCATATTGTTT
*
9592 GTAAGAACCAAATTGTTT
1 GTAAGAACCATATTGTTT
9610 GTTAA-AACCATATTGTTT
1 G-TAAGAACCATATTGTTT
*
9628 GTAAGAGCCATATTGTTT
1 GTAAGAACCATATTGTTT
9646 ACTCGTCTCT
Statistics
Matches: 48, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
17 17 0.35
18 28 0.58
19 3 0.06
ACGTcount: A:0.34, C:0.11, G:0.17, T:0.38
Consensus pattern (18 bp):
GTAAGAACCATATTGTTT
Left flanking sequence: Indices 9075 -- 9574
GTTTGGCGGGCGAAACCCACCGGGAGCGGCCCCGGGACCCCCACGTACATAGATATTCAGTATCA
AAGCATAGGTAACCAAACTCCGGCCCACTTTTCCCCATTGTCCGCCGCTTCGCCCACGTCTCGTA
ACCATTGTTGGGATCGCGTCGCGCCACGGAGCCACAATGATGGGGCAATTATTACCTAATTACTA
ACCAGAAGTATAAAAGCCGTCGGGTGCCCCGGTGACCCTAGTCACAATGAAAGCTGTTATTGGTA
AATCCACCCTCATGTTAGCCTACTTGGGCGTGTCGCTGACGGTCCCCTTCTTGTTGTCGTACCAA
GAAACCCACATCGATCCCAAGATCAAGGGGTTCGCCAACCCGCGGACGCTACTCGGCAAGGTTTA
AGGTAACGGTTGGAAGAGAAAACGGTTGGAAGTGGCCTGGTGCCACCATCGCATATATTTAATAC
AGGGAAGGTTTTGGTAACAGGGTAGTTGGTTAACTGGTAGAAATG
Right flanking sequence: Indices 9646 -- 10145
ACTCGTCTCTAACCCATCTGACCCATCCTCTGGCTAGTCACGCTTGTTGTGGTACCCCACCATCT
GCCCCACCGTTTCATTTCCCCGAGTGTCAATGCAACGACAATTAAGGTTTGGGTTCCATTACCCT
AACGGTTAGTTGGACACAATAGGGGTGACAGTGGCTGCAAACCTGTGTCGGGCTGCAAAATAACG
CCTATGGGTCCGGTGGGCTGTTGGCCATTGTTGGGCCGTGGTCACCCGTCGGGCGAGTGTTGGCA
ACTCCACAGAAGCAAGTTACCGCACGTCGGAGGAATGTTCCGAGGGCGCCAGCTGGCTCGGTGAT
GCCCTTTGTCGGTTCCATTTCCCCCTCACCGCTTCCCCTCCCCGCCGGAGTCCACACGGCGAAGC
CGCCGGAGCAATCATACTACGAACCCTGGCCGGGCTTGGCACAGATTGCGAGCCCAGGGCCCATC
AGGGTCCCTCGTATATTGTGAGCCCACGCCTCGTTCCCCAGTCGG
Found at i:11935 original size:9 final size:9
Alignment explanation
Indices: 11921--11999 Score: 70
Period size: 9 Copynumber: 8.9 Consensus size: 9
11911 CCCTTTTCAT
11921 TGGTGTTGG
1 TGGTGTTGG
11930 TGGTGTTGG
1 TGGTGTTGG
* * *
11939 TGTTGGTGT
1 TGGTGTTGG
*
11948 TGGTG-TGT
1 TGGTGTTGG
11956 TGGTGTTGG
1 TGGTGTTGG
* *
11965 TGTTGTTGT
1 TGGTGTTGG
*
11974 TGGTGTTGT
1 TGGTGTTGG
*
11983 TGTTGTTGG
1 TGGTGTTGG
*
11992 TGTTGTTG
1 TGGTGTTG
12000 TTGTTGTTGC
Statistics
Matches: 59, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
8 8 0.14
9 51 0.86
ACGTcount: A:0.00, C:0.00, G:0.47, T:0.53
Consensus pattern (9 bp):
TGGTGTTGG
Left flanking sequence: Indices 11421 -- 11920
GCTTGCACCCTGCAAGCCCGGCTCCTTCCCGTTACTACGGAAGGCAGCGACAAGCAAAGAAGAAA
TCAAAGAAGATGGGGGAAAAAAATCCCCTCAAGGAGGCAAATCAAAGCTTGTCGTTAGCGTGGTG
ATACTTGCTCATCACAGCCTCGGTGCTGCTGGTACTTCTGATGGAGTCTCTCGGCTGGGTCATCC
TCCCTTAGCGCTTGCGCAGGGATGGTTGGCTCAGCGTCTGTTGGTCTGGTGACAGGGTTTGTTAC
TGGTAGGTTGGCCACCTACCAGCTACGGGTCCTCGAACAGTCCTGACATGTGCAGTTGCACGCTT
CTACTCGATGGCCGACGGGCCGGGAGGTGGGAGGTGCAATCTAGCGTCAGGATGGGCGGTATCGC
CACAGAACCATCCCGTGGTCGGCGCGGGGAGTTGCAAGCCTCTGGGCTTCGCTTCCTTTGCCATA
TGAGAGACGAGATCAGAAATACTAGTGGTGCCACCCCCTTTTCAT
Right flanking sequence: Indices 12000 -- 12499
TTGTTGTTGCTGCTGTTGTTAGGGTTGGATGCCAATGGCTCCTTTTCCCCCTGTTGGTGGTGTCA
GTGGTATCTGATTCGATTCGTTGGATCGGGTGCTATTGGTACCGTTTTTTCCCCTGTTGGTGGTG
CCATTGGTATCCAATCCGGGTTTCTATAATTGTATAGTTAAGCACTGGGTGCGCCTTCGGGGTAG
CCTGCATGAGCGGGCTACCCTGAAGCCGTACTGGGGGCTTATAGTAATATTTAGGATATATACAG
GTTCCCCATAATCAACNGTAATATTTAGGATATATACAGGTTCCCCATAATCAACGCTATCTACG
GTACCAATAGTAAAGTCACGTGCCAAATGTCACATGTGTTTTGTGAGCCGCACCAGTATGTTAGG
TCAGCTCGTAAAGTGGCTAACATAACGTGTTATGTAATGCTCGTAAAGTCTTCAGCAAATGTTGA
ATGGTCATCGTATAGCCCGTCGTATAGTGACGGTGGCTGTTTGTT
Found at i:11973 original size:3 final size:3
Alignment explanation
Indices: 11933--12019 Score: 86
Period size: 3 Copynumber: 29.3 Consensus size: 3
11923 GTGTTGGTGG
* * * * * *
11933 TGT TGG TGT TGG TGT TGG TG- TGT TGG TGT TGG TGT TGT TGT TGG TGT
1 TGT TGT TGT TGT TGT TGT TGT TGT TGT TGT TGT TGT TGT TGT TGT TGT
* * *
11980 TGT TGT TGT TGG TGT TGT TGT TGT TGT TGC TGC TGT TGT T
1 TGT TGT TGT TGT TGT TGT TGT TGT TGT TGT TGT TGT TGT T
12020 AGGGTTGGAT
Statistics
Matches: 68, Mismatches: 15, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
2 2 0.03
3 66 0.97
ACGTcount: A:0.00, C:0.02, G:0.41, T:0.56
Consensus pattern (3 bp):
TGT
Left flanking sequence: Indices 11433 -- 11932
CAAGCCCGGCTCCTTCCCGTTACTACGGAAGGCAGCGACAAGCAAAGAAGAAATCAAAGAAGATG
GGGGAAAAAAATCCCCTCAAGGAGGCAAATCAAAGCTTGTCGTTAGCGTGGTGATACTTGCTCAT
CACAGCCTCGGTGCTGCTGGTACTTCTGATGGAGTCTCTCGGCTGGGTCATCCTCCCTTAGCGCT
TGCGCAGGGATGGTTGGCTCAGCGTCTGTTGGTCTGGTGACAGGGTTTGTTACTGGTAGGTTGGC
CACCTACCAGCTACGGGTCCTCGAACAGTCCTGACATGTGCAGTTGCACGCTTCTACTCGATGGC
CGACGGGCCGGGAGGTGGGAGGTGCAATCTAGCGTCAGGATGGGCGGTATCGCCACAGAACCATC
CCGTGGTCGGCGCGGGGAGTTGCAAGCCTCTGGGCTTCGCTTCCTTTGCCATATGAGAGACGAGA
TCAGAAATACTAGTGGTGCCACCCCCTTTTCATTGGTGTTGGTGG
Right flanking sequence: Indices 12020 -- 12519
AGGGTTGGATGCCAATGGCTCCTTTTCCCCCTGTTGGTGGTGTCAGTGGTATCTGATTCGATTCG
TTGGATCGGGTGCTATTGGTACCGTTTTTTCCCCTGTTGGTGGTGCCATTGGTATCCAATCCGGG
TTTCTATAATTGTATAGTTAAGCACTGGGTGCGCCTTCGGGGTAGCCTGCATGAGCGGGCTACCC
TGAAGCCGTACTGGGGGCTTATAGTAATATTTAGGATATATACAGGTTCCCCATAATCAACNGTA
ATATTTAGGATATATACAGGTTCCCCATAATCAACGCTATCTACGGTACCAATAGTAAAGTCACG
TGCCAAATGTCACATGTGTTTTGTGAGCCGCACCAGTATGTTAGGTCAGCTCGTAAAGTGGCTAA
CATAACGTGTTATGTAATGCTCGTAAAGTCTTCAGCAAATGTTGAATGGTCATCGTATAGCCCGT
CGTATAGTGACGGTGGCTGTTTGTTAGAGGGGGCCGTTTTTACAT
Found at i:12292 original size:39 final size:38
Alignment explanation
Indices: 12238--12315 Score: 147
Period size: 39 Copynumber: 2.0 Consensus size: 38
12228 GGGGCTTATA
12238 GTAATATTTAGGATATATACAGGTTCCCCATAATCAAC
1 GTAATATTTAGGATATATACAGGTTCCCCATAATCAAC
12276 NGTAATATTTAGGATATATACAGGTTCCCCATAATCAAC
1 -GTAATATTTAGGATATATACAGGTTCCCCATAATCAAC
12315 G
1 G
12316 CTATCTACGG
Statistics
Matches: 39, Mismatches: 0, Indels: 1
0.98 0.00 0.03
Matches are distributed among these distances:
38 1 0.03
39 38 0.97
ACGTcount: A:0.36, C:0.18, G:0.14, T:0.31
Consensus pattern (38 bp):
GTAATATTTAGGATATATACAGGTTCCCCATAATCAAC
Left flanking sequence: Indices 11738 -- 12237
GCACGCTTCTACTCGATGGCCGACGGGCCGGGAGGTGGGAGGTGCAATCTAGCGTCAGGATGGGC
GGTATCGCCACAGAACCATCCCGTGGTCGGCGCGGGGAGTTGCAAGCCTCTGGGCTTCGCTTCCT
TTGCCATATGAGAGACGAGATCAGAAATACTAGTGGTGCCACCCCCTTTTCATTGGTGTTGGTGG
TGTTGGTGTTGGTGTTGGTGTGTTGGTGTTGGTGTTGTTGTTGGTGTTGTTGTTGTTGGTGTTGT
TGTTGTTGTTGCTGCTGTTGTTAGGGTTGGATGCCAATGGCTCCTTTTCCCCCTGTTGGTGGTGT
CAGTGGTATCTGATTCGATTCGTTGGATCGGGTGCTATTGGTACCGTTTTTTCCCCTGTTGGTGG
TGCCATTGGTATCCAATCCGGGTTTCTATAATTGTATAGTTAAGCACTGGGTGCGCCTTCGGGGT
AGCCTGCATGAGCGGGCTACCCTGAAGCCGTACTGGGGGCTTATA
Right flanking sequence: Indices 12316 -- 12815
CTATCTACGGTACCAATAGTAAAGTCACGTGCCAAATGTCACATGTGTTTTGTGAGCCGCACCAG
TATGTTAGGTCAGCTCGTAAAGTGGCTAACATAACGTGTTATGTAATGCTCGTAAAGTCTTCAGC
AAATGTTGAATGGTCATCGTATAGCCCGTCGTATAGTGACGGTGGCTGTTTGTTAGAGGGGGCCG
TTTTTACATGCAGACGCTCCAAAATTTGTTAGAGGGGGCCGGTTTTGATAAATCACGTGATTTGG
GTCACACTACGAAGTAAGCTCGTAAAGCGACTTACGTAATGTTCGTAAAGTCTTGGGCGAATTTT
GAAATTTGTCATAGTGGTGTTAGAGGGGGCCGGTTTTAGGATACAATAGCATGGATATCTCGGTC
AATTGAATGGATACACTAACATTAATGGTTCATTAATGTTGACAAACGTTTAACCAAACTAATAG
GGTGGTTTTGGGGCTGATACACAGTGTTTTGAGTGAGTTTTCGTG
Found at i:13853 original size:14 final size:14
Alignment explanation
Indices: 13834--13861 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
13824 CCCACCAGGA
13834 CACTGGAGCTTTTC
1 CACTGGAGCTTTTC
13848 CACTGGAGCTTTTC
1 CACTGGAGCTTTTC
13862 GTTTATGTTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.14, C:0.29, G:0.21, T:0.36
Consensus pattern (14 bp):
CACTGGAGCTTTTC
Left flanking sequence: Indices 13334 -- 13833
GTTAACCCCAGATAAAAAAATGTTCAGGGCCCTAGGGACCAAAATGGGTTTGACATCGTGTTCCC
CCAGTGTGGCAGAATCGGTGATTCCATTTTGAGGTGCCCTTAAAATTCGTGTTTTTGGGAGCCTC
CAGAAGCCAGTTTGACGTTTAGGTTGCAAAAACGGCGGAGGGGGCCGGATAACTTGGCCTCGATT
GGGGTGTCGCTGCTATATGATATTTTATAGTCATGACCGCACCTTTTGGTCCAGATGAAATCTGT
ACCAAGCCCCCATGGCGTGGAAATCTTGTGGCCCCATCTGTCTTACCTAGTTAGGCCACCAGATC
ACGTGACACAAGTGTGGGTAGAAGTAAGAAGGGCATACTATCATCGTTATATTGCACGTATTTCA
AGTGGAAAAGACAAAACTAACTAATGATACTGGTATCACTGCCGAGTAGACGTGTTTTATTGCTT
CTGGCGTACTTACTAACCAGGCTTTTGGCTTACTCCCCACCAGGA
Right flanking sequence: Indices 13862 -- 14361
GTTTATGTTGCAAAATGGCCGAGGGGGCCGGTCATATCGGTTTTCAAATGGACGAACGTTTGTAA
GGTGGTTTCGAAAAGTAATTGACACGTACTACTGCCCTTGAAATTGTGTCTAAAAAGGCGTGGGT
CGAGACCCGATATTCTCCTGCACTCAACCCGATCGAAGGTAGTATCTAAAATTTAAGCACCCTAT
GAACGAGTAGTACGACGAATCAAACAGGTTAAGCGTAGTATAGGTGTCCTGTGGCGTTTTGGATT
CTTCCCAGTAGCTTCTTCCCTTATAGCCACCTCAAAGGATTGCCTATGGGTAACCCTGAAACTCC
CGAGTGTCTAATTCTTCTAAGATTTTACAAAATACGCTGGCCACGATCGTTTCACCAGCACCACT
CGCTGATCTCCCATGGCGTGTTCATCACCAAGGATCAGCCGTTAGCATATTTTTAACCAGCTAGA
CCTGTACGTCAGGGCAACACGATGCATATCTAAAACAGCGTCACC
Found at i:17412 original size:9 final size:9
Alignment explanation
Indices: 17400--17585 Score: 151
Period size: 9 Copynumber: 19.7 Consensus size: 9
17390 CTCTTCGTTC
17400 TCTCTCCAT
1 TCTCTCCAT
*
17409 TCTCTCCTT
1 TCTCTCCAT
17418 TCTCTCCATT
1 TCTCTCCA-T
*
17428 TCTCTCCTTT
1 TCTCTCC-AT
*
17438 GTCTCTCTATT
1 -TCTCTCCA-T
17449 CTCTCTCCAT
1 -TCTCTCCAT
*
17459 TCTCT-GAT
1 TCTCTCCAT
17467 TCTCTCCAT
1 TCTCTCCAT
*
17476 CCTTCTCCAT
1 TC-TCTCCAT
17486 TCTCTCCAT
1 TCTCTCCAT
*
17495 CCAT-TCCAT
1 TC-TCTCCAT
*
17504 CCATCTCCAT
1 TC-TCTCCAT
17514 TCTCTCCAT
1 TCTCTCCAT
17523 TCTCTCCAT
1 TCTCTCCAT
17532 TCTTCTCCAT
1 TC-TCTCCAT
*
17542 TCTCTCCAA
1 TCTCTCCAT
* *
17551 CCTTCTCCTT
1 TC-TCTCCAT
*
17561 TCTCTCCAC
1 TCTCTCCAT
*
17570 TCTTCTCCAC
1 TC-TCTCCAT
17580 TCTCTC
1 TCTCTC
17586 TCTTCATATC
Statistics
Matches: 146, Mismatches: 20, Indels: 22
0.78 0.11 0.12
Matches are distributed among these distances:
8 7 0.05
9 76 0.52
10 49 0.34
11 14 0.10
ACGTcount: A:0.10, C:0.44, G:0.01, T:0.45
Consensus pattern (9 bp):
TCTCTCCAT
Left flanking sequence: Indices 16900 -- 17399
TAATCTCTCGGCCTCGAATCATAAATCCGAGCCAAGCATAATGTAAGCGTTAGTAATCAAACATA
ACGTGACATCTCGTATCTGGCTAGACATTGTCGCCGGTTTCAGGGTCAATGGCGTTGCCACTTGA
TAGTGGACGTTACTACAGACCAGGGGTAGAGATATCATCCGGGGGCTTAACTAAGGTTTAACCTT
ATTTGCTCAACGTTAAACGTCATTTTGCCTACGGGTGACACATTGAGGTTACGCCAAGCTTTCCA
GGCACCGTGACCGTGGAAACGAGGGGTTGTGTTGTCATCCACACATTCCACAAACAGTCCCGTTT
TGGTCTTTCCCACATTCTCCAGGTCACAGCATTGTCGTGGACTAATGGAGTAATGGTGCCAAGAA
GGAACCACCACCTAGACGAAAAGGCAAAGACGAAAAGACGAAAAGACGAGAACAAACACGGTCTC
GTCTATGAATACCACAGCTTCGAGGCTATCCTATTCTCTTCGTTC
Right flanking sequence: Indices 17586 -- 18085
TCTTCATATCATCCACCATGGGCCCCTCCTCAAATGCTATTTCATTTATCGAGCCGATCAAGCTG
GCTCCTATGTACACTATTTCGTCCAAGCCGCCTCCTTGAACACCTCCTGCAACGACTTCCCCCCG
GTGACCACGTCAAACACCTGCTGGCGTTGCTGCAACGACAAGTCGCCGTTCTGGGACACCTGGTG
CTTGGCAAACTGGGCCGCAGCGTTGCCAGCGAACTTGCCGTCCGCCACCACCACGGGCTCGCCCT
TGACCACCGCGGCGTACCGCTCCTTGAACTGCTCGGGGTTCACCAGCACCGAGAAGCTCAGCTGC
TGCAAAATGAACTGGTTCGGGTGCGCCTCGGGAAGCTGGGCAATCACCAGCTTGGGCAACTTGTA
GGGGTATTTGGAGGCCACAAGGGCGTCCTTGGTGACCGCAGCCACTCTCGAGCTCGGCAGAATCG
CCAACGAGACGGGCTTCCCGTACAAAAACGTGTTCCCTCCCAACC
Found at i:17432 original size:19 final size:18
Alignment explanation
Indices: 17400--17585 Score: 151
Period size: 19 Copynumber: 9.8 Consensus size: 18
17390 CTCTTCGTTC
*
17400 TCTCTCCATTCTCTCCTT
1 TCTCTCCATTCTCTCCAT
*
17418 TCTCTCCATTTCTCTCCTTT
1 TCTCTCCA-TTCTCTCC-AT
*
17438 GTCTCTCTATTCTCTCTCCAT
1 -TCTCTCCA-T-TCTCTCCAT
*
17459 TCTCT-GATTCTCTCCAT
1 TCTCTCCATTCTCTCCAT
*
17476 CCTTCTCCATTCTCTCCAT
1 TC-TCTCCATTCTCTCCAT
* *
17495 CCAT-TCCATCCATCTCCAT
1 TC-TCTCCATTC-TCTCCAT
17514 TCTCTCCATTCTCTCCAT
1 TCTCTCCATTCTCTCCAT
*
17532 TCTTCTCCATTCTCTCCAA
1 TC-TCTCCATTCTCTCCAT
* * *
17551 CCTTCTCCTTTCTCTCCAC
1 TC-TCTCCATTCTCTCCAT
*
17570 TCTTCTCCACTCTCTC
1 TC-TCTCCATTCTCTC
17586 TCTTCATATC
Statistics
Matches: 143, Mismatches: 16, Indels: 17
0.81 0.09 0.10
Matches are distributed among these distances:
17 10 0.07
18 28 0.20
19 81 0.57
20 7 0.05
21 10 0.07
22 7 0.05
ACGTcount: A:0.10, C:0.44, G:0.01, T:0.45
Consensus pattern (18 bp):
TCTCTCCATTCTCTCCAT
Left flanking sequence: Indices 16900 -- 17399
TAATCTCTCGGCCTCGAATCATAAATCCGAGCCAAGCATAATGTAAGCGTTAGTAATCAAACATA
ACGTGACATCTCGTATCTGGCTAGACATTGTCGCCGGTTTCAGGGTCAATGGCGTTGCCACTTGA
TAGTGGACGTTACTACAGACCAGGGGTAGAGATATCATCCGGGGGCTTAACTAAGGTTTAACCTT
ATTTGCTCAACGTTAAACGTCATTTTGCCTACGGGTGACACATTGAGGTTACGCCAAGCTTTCCA
GGCACCGTGACCGTGGAAACGAGGGGTTGTGTTGTCATCCACACATTCCACAAACAGTCCCGTTT
TGGTCTTTCCCACATTCTCCAGGTCACAGCATTGTCGTGGACTAATGGAGTAATGGTGCCAAGAA
GGAACCACCACCTAGACGAAAAGGCAAAGACGAAAAGACGAAAAGACGAGAACAAACACGGTCTC
GTCTATGAATACCACAGCTTCGAGGCTATCCTATTCTCTTCGTTC
Right flanking sequence: Indices 17586 -- 18085
TCTTCATATCATCCACCATGGGCCCCTCCTCAAATGCTATTTCATTTATCGAGCCGATCAAGCTG
GCTCCTATGTACACTATTTCGTCCAAGCCGCCTCCTTGAACACCTCCTGCAACGACTTCCCCCCG
GTGACCACGTCAAACACCTGCTGGCGTTGCTGCAACGACAAGTCGCCGTTCTGGGACACCTGGTG
CTTGGCAAACTGGGCCGCAGCGTTGCCAGCGAACTTGCCGTCCGCCACCACCACGGGCTCGCCCT
TGACCACCGCGGCGTACCGCTCCTTGAACTGCTCGGGGTTCACCAGCACCGAGAAGCTCAGCTGC
TGCAAAATGAACTGGTTCGGGTGCGCCTCGGGAAGCTGGGCAATCACCAGCTTGGGCAACTTGTA
GGGGTATTTGGAGGCCACAAGGGCGTCCTTGGTGACCGCAGCCACTCTCGAGCTCGGCAGAATCG
CCAACGAGACGGGCTTCCCGTACAAAAACGTGTTCCCTCCCAACC
Found at i:17433 original size:28 final size:28
Alignment explanation
Indices: 17400--17585 Score: 155
Period size: 28 Copynumber: 6.5 Consensus size: 28
17390 CTCTTCGTTC
* *
17400 TCTCTCCATTCTCTCCTTTC-TCTCCATT
1 TCTCTCCATTCTCTCCATTCTTCTCC-AT
* *
17428 TCTCTCCTTTGTCTCTCTATTCTCTCTCCAT
1 TCTCTCC-AT-TCTCTCCATTCT-TCTCCAT
* *
17459 TCTCT-GATTCTCTCCATCCTTCTCCAT
1 TCTCTCCATTCTCTCCATTCTTCTCCAT
* * *
17486 TCTCTCCATCCAT-TCCATCCATCTCCAT
1 TCTCTCCATTC-TCTCCATTCTTCTCCAT
17514 TCTCTCCATTCTCTCCATTCTTCTCCAT
1 TCTCTCCATTCTCTCCATTCTTCTCCAT
** * *
17542 TCTCTCCAACCTTCTCCTTTC-TCTCCAC
1 TCTCTCCATTC-TCTCCATTCTTCTCCAT
*
17570 TCTTCTCCACTCTCTC
1 TC-TCTCCATTCTCTC
17586 TCTTCATATC
Statistics
Matches: 129, Mismatches: 20, Indels: 18
0.77 0.12 0.11
Matches are distributed among these distances:
27 13 0.10
28 78 0.60
29 18 0.14
30 9 0.07
31 6 0.05
32 5 0.04
ACGTcount: A:0.10, C:0.44, G:0.01, T:0.45
Consensus pattern (28 bp):
TCTCTCCATTCTCTCCATTCTTCTCCAT
Left flanking sequence: Indices 16900 -- 17399
TAATCTCTCGGCCTCGAATCATAAATCCGAGCCAAGCATAATGTAAGCGTTAGTAATCAAACATA
ACGTGACATCTCGTATCTGGCTAGACATTGTCGCCGGTTTCAGGGTCAATGGCGTTGCCACTTGA
TAGTGGACGTTACTACAGACCAGGGGTAGAGATATCATCCGGGGGCTTAACTAAGGTTTAACCTT
ATTTGCTCAACGTTAAACGTCATTTTGCCTACGGGTGACACATTGAGGTTACGCCAAGCTTTCCA
GGCACCGTGACCGTGGAAACGAGGGGTTGTGTTGTCATCCACACATTCCACAAACAGTCCCGTTT
TGGTCTTTCCCACATTCTCCAGGTCACAGCATTGTCGTGGACTAATGGAGTAATGGTGCCAAGAA
GGAACCACCACCTAGACGAAAAGGCAAAGACGAAAAGACGAAAAGACGAGAACAAACACGGTCTC
GTCTATGAATACCACAGCTTCGAGGCTATCCTATTCTCTTCGTTC
Right flanking sequence: Indices 17586 -- 18085
TCTTCATATCATCCACCATGGGCCCCTCCTCAAATGCTATTTCATTTATCGAGCCGATCAAGCTG
GCTCCTATGTACACTATTTCGTCCAAGCCGCCTCCTTGAACACCTCCTGCAACGACTTCCCCCCG
GTGACCACGTCAAACACCTGCTGGCGTTGCTGCAACGACAAGTCGCCGTTCTGGGACACCTGGTG
CTTGGCAAACTGGGCCGCAGCGTTGCCAGCGAACTTGCCGTCCGCCACCACCACGGGCTCGCCCT
TGACCACCGCGGCGTACCGCTCCTTGAACTGCTCGGGGTTCACCAGCACCGAGAAGCTCAGCTGC
TGCAAAATGAACTGGTTCGGGTGCGCCTCGGGAAGCTGGGCAATCACCAGCTTGGGCAACTTGTA
GGGGTATTTGGAGGCCACAAGGGCGTCCTTGGTGACCGCAGCCACTCTCGAGCTCGGCAGAATCG
CCAACGAGACGGGCTTCCCGTACAAAAACGTGTTCCCTCCCAACC
Found at i:17499 original size:13 final size:13
Alignment explanation
Indices: 17481--17522 Score: 50
Period size: 13 Copynumber: 3.1 Consensus size: 13
17471 TCCATCCTTC
17481 TCCATTCTCTCCA
1 TCCATTCTCTCCA
17494 TCCATTC-CATCCA
1 TCCATTCTC-TCCA
17507 TCTCCATTCTCTCCA
1 --TCCATTCTCTCCA
17522 T
1 T
17523 TCTCTCCATT
Statistics
Matches: 25, Mismatches: 0, Indels: 8
0.76 0.00 0.24
Matches are distributed among these distances:
12 1 0.04
13 12 0.48
15 11 0.44
16 1 0.04
ACGTcount: A:0.17, C:0.45, G:0.00, T:0.38
Consensus pattern (13 bp):
TCCATTCTCTCCA
Left flanking sequence: Indices 16981 -- 17480
CTGGCTAGACATTGTCGCCGGTTTCAGGGTCAATGGCGTTGCCACTTGATAGTGGACGTTACTAC
AGACCAGGGGTAGAGATATCATCCGGGGGCTTAACTAAGGTTTAACCTTATTTGCTCAACGTTAA
ACGTCATTTTGCCTACGGGTGACACATTGAGGTTACGCCAAGCTTTCCAGGCACCGTGACCGTGG
AAACGAGGGGTTGTGTTGTCATCCACACATTCCACAAACAGTCCCGTTTTGGTCTTTCCCACATT
CTCCAGGTCACAGCATTGTCGTGGACTAATGGAGTAATGGTGCCAAGAAGGAACCACCACCTAGA
CGAAAAGGCAAAGACGAAAAGACGAAAAGACGAGAACAAACACGGTCTCGTCTATGAATACCACA
GCTTCGAGGCTATCCTATTCTCTTCGTTCTCTCTCCATTCTCTCCTTTCTCTCCATTTCTCTCCT
TTGTCTCTCTATTCTCTCTCCATTCTCTGATTCTCTCCATCCTTC
Right flanking sequence: Indices 17523 -- 18022
TCTCTCCATTCTTCTCCATTCTCTCCAACCTTCTCCTTTCTCTCCACTCTTCTCCACTCTCTCTC
TTCATATCATCCACCATGGGCCCCTCCTCAAATGCTATTTCATTTATCGAGCCGATCAAGCTGGC
TCCTATGTACACTATTTCGTCCAAGCCGCCTCCTTGAACACCTCCTGCAACGACTTCCCCCCGGT
GACCACGTCAAACACCTGCTGGCGTTGCTGCAACGACAAGTCGCCGTTCTGGGACACCTGGTGCT
TGGCAAACTGGGCCGCAGCGTTGCCAGCGAACTTGCCGTCCGCCACCACCACGGGCTCGCCCTTG
ACCACCGCGGCGTACCGCTCCTTGAACTGCTCGGGGTTCACCAGCACCGAGAAGCTCAGCTGCTG
CAAAATGAACTGGTTCGGGTGCGCCTCGGGAAGCTGGGCAATCACCAGCTTGGGCAACTTGTAGG
GGTATTTGGAGGCCACAAGGGCGTCCTTGGTGACCGCAGCCACTC
Found at i:17575 original size:12 final size:11
Alignment explanation
Indices: 17514--17587 Score: 51
Period size: 10 Copynumber: 7.5 Consensus size: 11
17504 CCATCTCCAT
17514 TCTCTCCA-T-
1 TCTCTCCACTC
*
17523 TCTCTCCATTC
1 TCTCTCCACTC
17534 T-TCTCCA-T-
1 TCTCTCCACTC
17542 TCTCTCCAAC-C
1 TCTCTCC-ACTC
*
17553 T-TCT-C-CTT
1 TCTCTCCACTC
17561 TCTCTCCACTC
1 TCTCTCCACTC
17572 T-TCTCCACTC
1 TCTCTCCACTC
17582 TCTCTC
1 TCTCTC
17588 TTCATATCAT
Statistics
Matches: 52, Mismatches: 2, Indels: 20
0.70 0.03 0.27
Matches are distributed among these distances:
7 1 0.02
8 2 0.04
9 18 0.35
10 22 0.42
11 9 0.17
ACGTcount: A:0.09, C:0.47, G:0.00, T:0.43
Consensus pattern (11 bp):
TCTCTCCACTC
Left flanking sequence: Indices 17014 -- 17513
TGGCGTTGCCACTTGATAGTGGACGTTACTACAGACCAGGGGTAGAGATATCATCCGGGGGCTTA
ACTAAGGTTTAACCTTATTTGCTCAACGTTAAACGTCATTTTGCCTACGGGTGACACATTGAGGT
TACGCCAAGCTTTCCAGGCACCGTGACCGTGGAAACGAGGGGTTGTGTTGTCATCCACACATTCC
ACAAACAGTCCCGTTTTGGTCTTTCCCACATTCTCCAGGTCACAGCATTGTCGTGGACTAATGGA
GTAATGGTGCCAAGAAGGAACCACCACCTAGACGAAAAGGCAAAGACGAAAAGACGAAAAGACGA
GAACAAACACGGTCTCGTCTATGAATACCACAGCTTCGAGGCTATCCTATTCTCTTCGTTCTCTC
TCCATTCTCTCCTTTCTCTCCATTTCTCTCCTTTGTCTCTCTATTCTCTCTCCATTCTCTGATTC
TCTCCATCCTTCTCCATTCTCTCCATCCATTCCATCCATCTCCAT
Right flanking sequence: Indices 17588 -- 18087
TTCATATCATCCACCATGGGCCCCTCCTCAAATGCTATTTCATTTATCGAGCCGATCAAGCTGGC
TCCTATGTACACTATTTCGTCCAAGCCGCCTCCTTGAACACCTCCTGCAACGACTTCCCCCCGGT
GACCACGTCAAACACCTGCTGGCGTTGCTGCAACGACAAGTCGCCGTTCTGGGACACCTGGTGCT
TGGCAAACTGGGCCGCAGCGTTGCCAGCGAACTTGCCGTCCGCCACCACCACGGGCTCGCCCTTG
ACCACCGCGGCGTACCGCTCCTTGAACTGCTCGGGGTTCACCAGCACCGAGAAGCTCAGCTGCTG
CAAAATGAACTGGTTCGGGTGCGCCTCGGGAAGCTGGGCAATCACCAGCTTGGGCAACTTGTAGG
GGTATTTGGAGGCCACAAGGGCGTCCTTGGTGACCGCAGCCACTCTCGAGCTCGGCAGAATCGCC
AACGAGACGGGCTTCCCGTACAAAAACGTGTTCCCTCCCAACCGG
Found at i:23234 original size:17 final size:18
Alignment explanation
Indices: 23214--23247 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
23204 CTGGGCCGCG
23214 TGGAG-CACAAAGCCGGT
1 TGGAGTCACAAAGCCGGT
*
23231 TGGAGTTACAAAGCCGG
1 TGGAGTCACAAAGCCGG
23248 ACCTAGAACA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.29, C:0.21, G:0.35, T:0.15
Consensus pattern (18 bp):
TGGAGTCACAAAGCCGGT
Left flanking sequence: Indices 22714 -- 23213
ATGAGGGCCTTGTGGTTGGGGAAGATGCTGGCGTCGACGACAGCAAATTGGACGTCGGTCACTTT
GGTGTTGCCGAGGTAGACAGTGTCAAGCACCCAGGGACCGTGAATTTTATTGCCGCCAACATACT
CGATGTTGAGCTCCCCGGTGGTCTTCTTAGCATCTTTCGACTTCGAGACATCGTGGAGAGGGCGG
TCCACCCACAAATCGGCCGACCCGGTATCCAACTGGGCGGTGACGGGGTCCTTCTGGGAGCCAAA
CTGGAGATCAACGGTATAGGTGCCACTGGGAACCATATCGAGATCAGAACTGGCAGAAAACCATG
TCAATTGGGGCTCGTTTTTGTATGTGACGTCCAACGACAAGACCTTCGGGGCCTTCGAGGGGAGG
GCAACAACAGCAGCTGCTAAAGAGAGGAGAACAGGGAATTTCATTGTAGATAACGAGGCATTAGC
AGCTATTTATGTCCTTTATTCAGAGTCAGGACCCTCTGGGCCGCG
Right flanking sequence: Indices 23248 -- 23747
ACCTAGAACAATCGGAGCAAATGCTGGTGCCGTGTAGTGGAACGTGTCGCGCGGGGATGGTGGAA
TGCTTTACGTAGACCATGGGAATATGTCCAGCACGGTTCTTTTTGGTTTAGGGTGGGTATAATGG
CCTGGGGATGCTTTTGGTGTGTTTCGTTTACCGAAACAAGTACGATACTGATACGAGAGGCTCCT
TGATTTATAACTCAATGACACTTTGTGTATTTTTAGAAGCAATCGAAGTGTCGGTTCCGCTGAAC
AGTGTGGGGTTTGCGTTCAAAGGTGCGTAGGTCGGATTTGTGTGATAGTCTCGTCCTTATCGCCT
GTTGTCAAGATACTACGAACTGCTCCGTCTTACCACAATAAGTTCACCGTTGGCTCCCAACGCCT
CCGGGTGCCATTCGTTCACGCGGCAGTCCCAGGGATAGGCCAATTGTATAGTGCAACCGACTTTC
AAGCATTGTTCGGAACTCGGCACAGAGTCCACCGATTATCTCCTA
Found at i:23844 original size:23 final size:23
Alignment explanation
Indices: 23802--23851 Score: 73
Period size: 23 Copynumber: 2.2 Consensus size: 23
23792 TGGCAACTAT
**
23802 AACCGTCAGCGAACGTGGCAACG
1 AACCGTCAGCGAACAAGGCAACG
*
23825 AACCGTCAGCGAACAAGGCAGCG
1 AACCGTCAGCGAACAAGGCAACG
23848 AACC
1 AACC
23852 AAACCATCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.34, C:0.32, G:0.28, T:0.06
Consensus pattern (23 bp):
AACCGTCAGCGAACAAGGCAACG
Left flanking sequence: Indices 23302 -- 23801
GGATGGTGGAATGCTTTACGTAGACCATGGGAATATGTCCAGCACGGTTCTTTTTGGTTTAGGGT
GGGTATAATGGCCTGGGGATGCTTTTGGTGTGTTTCGTTTACCGAAACAAGTACGATACTGATAC
GAGAGGCTCCTTGATTTATAACTCAATGACACTTTGTGTATTTTTAGAAGCAATCGAAGTGTCGG
TTCCGCTGAACAGTGTGGGGTTTGCGTTCAAAGGTGCGTAGGTCGGATTTGTGTGATAGTCTCGT
CCTTATCGCCTGTTGTCAAGATACTACGAACTGCTCCGTCTTACCACAATAAGTTCACCGTTGGC
TCCCAACGCCTCCGGGTGCCATTCGTTCACGCGGCAGTCCCAGGGATAGGCCAATTGTATAGTGC
AACCGACTTTCAAGCATTGTTCGGAACTCGGCACAGAGTCCACCGATTATCTCCTACTAACTCCC
AACTATTACAGTAGTGTTGATCTTAGTAATGAAAGTGGCAACTAT
Right flanking sequence: Indices 23852 -- 24351
AAACCATCAGCGAACATGGCAGCGAACTAAACCATCAGCGAGCATAATAACAAACTAAACCATAA
GTTACACTCCCATGCCACAATGCCAGTACGGTCACAACCTTCAGGCACAATCAAGCCACCAGCCC
CACGCTTTCTACTTTGTTATCTCAATACATATATTTAACTCGATAAATAGGAGTGATGCGACTCT
AGATTAAAAGTTCTTGACGAATTCCTCGCAGGCCTTCTTCAAGGTCTCCAAGTTCTCCTTGGACA
ACGAGCCGGTGTCGCGGATCTCCTTCTGCACCTCGGGGTGGTTCAGCGAAAGGTCAGCCAAGAAA
GCCTGCTCGAACTCACCGACACGGTTGACGGCAATCGAGTCCAAGAAACCGTTGACACCAGCGAA
AATGACAGGGACCTGGTCCTCAGCAGCGATGGGGGCACCCTGCTTCTGCTTCAACAACTGGGTCA
ATCTCTCACCACGAGCCAAGGTCTGCTTGGTGGAAGCGTCCAAGT
Found at i:23865 original size:28 final size:28
Alignment explanation
Indices: 23825--23892 Score: 109
Period size: 28 Copynumber: 2.4 Consensus size: 28
23815 CGTGGCAACG
*
23825 AACCGTCAGCGAACAAGGCAGCGAACCA
1 AACCATCAGCGAACAAGGCAGCGAACCA
* *
23853 AACCATCAGCGAACATGGCAGCGAACTA
1 AACCATCAGCGAACAAGGCAGCGAACCA
23881 AACCATCAGCGA
1 AACCATCAGCGA
23893 GCATAATAAC
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
28 37 1.00
ACGTcount: A:0.40, C:0.31, G:0.22, T:0.07
Consensus pattern (28 bp):
AACCATCAGCGAACAAGGCAGCGAACCA
Left flanking sequence: Indices 23325 -- 23824
ACCATGGGAATATGTCCAGCACGGTTCTTTTTGGTTTAGGGTGGGTATAATGGCCTGGGGATGCT
TTTGGTGTGTTTCGTTTACCGAAACAAGTACGATACTGATACGAGAGGCTCCTTGATTTATAACT
CAATGACACTTTGTGTATTTTTAGAAGCAATCGAAGTGTCGGTTCCGCTGAACAGTGTGGGGTTT
GCGTTCAAAGGTGCGTAGGTCGGATTTGTGTGATAGTCTCGTCCTTATCGCCTGTTGTCAAGATA
CTACGAACTGCTCCGTCTTACCACAATAAGTTCACCGTTGGCTCCCAACGCCTCCGGGTGCCATT
CGTTCACGCGGCAGTCCCAGGGATAGGCCAATTGTATAGTGCAACCGACTTTCAAGCATTGTTCG
GAACTCGGCACAGAGTCCACCGATTATCTCCTACTAACTCCCAACTATTACAGTAGTGTTGATCT
TAGTAATGAAAGTGGCAACTATAACCGTCAGCGAACGTGGCAACG
Right flanking sequence: Indices 23893 -- 24392
GCATAATAACAAACTAAACCATAAGTTACACTCCCATGCCACAATGCCAGTACGGTCACAACCTT
CAGGCACAATCAAGCCACCAGCCCCACGCTTTCTACTTTGTTATCTCAATACATATATTTAACTC
GATAAATAGGAGTGATGCGACTCTAGATTAAAAGTTCTTGACGAATTCCTCGCAGGCCTTCTTCA
AGGTCTCCAAGTTCTCCTTGGACAACGAGCCGGTGTCGCGGATCTCCTTCTGCACCTCGGGGTGG
TTCAGCGAAAGGTCAGCCAAGAAAGCCTGCTCGAACTCACCGACACGGTTGACGGCAATCGAGTC
CAAGAAACCGTTGACACCAGCGAAAATGACAGGGACCTGGTCCTCAGCAGCGATGGGGGCACCCT
GCTTCTGCTTCAACAACTGGGTCAATCTCTCACCACGAGCCAAGGTCTGCTTGGTGGAAGCGTCC
AAGTCGGAACCGAACTGGGCGAAGGCAGCGACTTCTCTGTACTGA
Found at i:28178 original size:16 final size:16
Alignment explanation
Indices: 28129--28214 Score: 99
Period size: 16 Copynumber: 5.5 Consensus size: 16
28119 TTCGTAGCCA
*
28129 CCACCACTTCTAG-TC
1 CCACCCCTTCTAGTTC
* *
28144 ACCACTCTTTCTAG-TC
1 -CCACCCCTTCTAGTTC
28160 CACACCCC-T-TAGTTC
1 C-CACCCCTTCTAGTTC
28175 CCACCCCTTCTAGTTC
1 CCACCCCTTCTAGTTC
28191 CCACCCCTTCTAGTTC
1 CCACCCCTTCTAGTTC
28207 CCACCCCT
1 CCACCCCT
28215 ACCATCTGCT
Statistics
Matches: 61, Mismatches: 5, Indels: 8
0.82 0.07 0.11
Matches are distributed among these distances:
14 9 0.15
15 6 0.10
16 46 0.75
ACGTcount: A:0.16, C:0.49, G:0.06, T:0.29
Consensus pattern (16 bp):
CCACCCCTTCTAGTTC
Left flanking sequence: Indices 27629 -- 28128
AACGTTTTATAGAGACACCTGTGACCCAATATCGGATCTATCCACAGCTAGAAACTACTGCCCGT
GTAAATAGCCTTGAAGGTCTAACTGCGTTAATGCCACTGACTCCACACACGCACAAACTGGGACT
AAGGTAGAAAGCTTGGATTTATTGTAGAATCTTGAACTTATTGCACCCCTTCCTTACTTGTTATC
ACGTTGCTTGATATCAACTGCGGTATCAAGTTTCAAGAAGCAGTCGATCATAGAATGGTGGATAG
CCCCTAGACTCGCATTTATACCCCAGAGACGAACCTCATTCCGTAGGCATACCTAATCAGACATG
CTCTTTAACTTGTACAGAACACCTCAAAGTGATACTGGTTCTCACAACCCTTCAGCTCTAACCTT
CATTCACTCAAGCTCGTAAATGACAGATTCTCTACCCAGTGTTGCAAACTACCCAAAATTGGCAG
CTCATCGCGTTAGTCCATCTCCAAGTGAGCCCTAATTCGTAGCCA
Right flanking sequence: Indices 28215 -- 28714
ACCATCTGCTATGTATAATGCATCACTACAATCTATAGTACATCCCCTCCACCGACCGCGGCAAC
GGGCCGTCGGGCTTGCGCTCGGCCGCCAAGAGCTGCTCGGAGTCAAACGTGGTGTGCCCAGGCGT
GCCCTCGAGGGTCGCGTTGGCCACGCTGGGCCACCCCTCCTTGCCCTTCAGCGAGATCAACTGCT
TCCAGTGCTCCTGGCACCCCTGGACCACCTCCACCAGCTCACGGGCATCCAAAAAGTCGCCGTTG
AACGCAAACGCGTTCTCGGGCTTGCCGTCGGGCAACTTGTAGTCGCGGAACCACCGTCTGGTGGC
CTCCAAGAGCCCCGGGCACTGGGCCCGGATGTCGTTCACGTCGTTCAACGTGGCCGCGAGCGGGT
CGTCGGTGGCCACCACCATCACCTTCCAGTCCAACTCGCCGTCGTCAATAAGAGCAATGGCTCCG
AGGATCTTCACCCGCACCACCAGCCCCGTCGGGTGGATCTTCAGC
Found at i:30105 original size:23 final size:23
Alignment explanation
Indices: 30073--30118 Score: 83
Period size: 23 Copynumber: 2.0 Consensus size: 23
30063 TATCATCAGT
*
30073 GTCATGTCTCATAAAATACAATC
1 GTCATATCTCATAAAATACAATC
30096 GTCATATCTCATAAAATACAATC
1 GTCATATCTCATAAAATACAATC
30119 AGAGATAGGT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.41, C:0.22, G:0.07, T:0.30
Consensus pattern (23 bp):
GTCATATCTCATAAAATACAATC
Left flanking sequence: Indices 29573 -- 30072
CCTGAGAGGGGCAAGGCTGAAATGGATGTGGCTGTCTGGAGGAGTCCGATTCGGGTAACCGGTAG
TAAGACAGTGAGACGGTAGGGAGGGGGGGGCGGGTGGTGGGGGATGGTGAGATGATGGGGCCATG
ATGAGATGACGATGGACAATTGTTTAAGGGGAGAGGGGTAGAGTAGAAATAGGGAATGTTAACGG
GTGTTTGTTGCTCTCTGCTGTTACCCCTATCCGGCTACGGCTGCGTTTGGTTTCTCTCAATCGGG
TAAGCTTTATCGGAGTATTATGACAAAGGTTAGGAGAATTGGGTTGCTTGTGGAATCGTCTAAGA
ACGCAGATCTGCTCTTGATCGTGGGTGATCTGATGAGAGGATCCAAGGAAACATTTTTTGGACTC
GATACAGTGTTTATACCAATTTTCTACCGGTAAAAGAAAACCTTGTAAACCATGATTATTAAAAA
TTTGGAAGTGTCTCTATTTCCAAGCCAACTAATTATATCATCAGT
Right flanking sequence: Indices 30119 -- 30618
AGAGATAGGTTCAGTCCACCTCGCATTATAGCTGATGAAGCATTTATATCAATAATTTCTGAATC
TGACAAACCGCCCGGTGTATTTGAATGTACATCCAGTCACTATGGGGTGGGTGAAATTGAAAAAT
ACGTGTAGTGGCCATTTCTGTTATCTCCAAAGTCGACAGTCTACAATGCTCAATGGGTCTAGCGT
GTCTGAATTACCCGTTCCACATCCCTGGTCGAAAATGAAGGGTCAATCCAATTCCCACCGTTATT
GATCAATTATTCACTTCTCACGGGATAATACTACTCTCAAAGCTTAACACCCGTAATCCTCACCG
ACAGGGTCAATACCCTTCCCACTGTTATTGTACAATTCTCAATCTCATCACCCCAACTCTCACCC
CCCAAAGCTCCTTGAATTCTCTATAAATGCTATCCGGCCTGTCGGCTAATTCGGGGCTGGGCCCG
TGTATACTATCTCCCCCTTCTCATTAAACAGAGCGTTCTCATCGC
Found at i:34981 original size:11 final size:11
Alignment explanation
Indices: 34950--35012 Score: 65
Period size: 11 Copynumber: 5.8 Consensus size: 11
34940 CATCCGCTTC
34950 CCTCCTCTCTT
1 CCTCCTCTCTT
*
34961 CCT-TTCTCTT
1 CCTCCTCTCTT
34971 CCTCCTCTCTT
1 CCTCCTCTCTT
* **
34982 CCTCCTTTCAC
1 CCTCCTCTCTT
**
34993 CCTCCTCTCAC
1 CCTCCTCTCTT
35004 CCTCCTCTC
1 CCTCCTCTC
35013 ATACACCTCG
Statistics
Matches: 45, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
10 9 0.20
11 36 0.80
ACGTcount: A:0.03, C:0.56, G:0.00, T:0.41
Consensus pattern (11 bp):
CCTCCTCTCTT
Left flanking sequence: Indices 34450 -- 34949
AAACAATCTATAAGCTGAACCAGATGATGAAGTCGTTGTTTGAGAGTGATGTGCAAGGCTTCCAC
GGGTAGGGTAAGTTTGGGCTACAGATTACTTGGGGAATATCTTCGCCAGCAAATGAAAAAGTGTC
ACCTCTTATTCCCATTCAGTTTTATAAGCCTGCTTATTCCAGAGTTCAAACAGTAGAAACGTTGA
CCCAATATTGTCACTCTGTTGCTCAAGGTGCTTACCGTACCACCACAACGTCAAACCCTTAGCCA
CAGGTAGGACTTCATCAAGCTCCAGCAGAGTCGACTCATACCCAAAAGCCTTCATAAGACTTTTA
TCCCCTAATCAGTGTTCAACCAACCCAAAACAAGCGTTGGGGGGTCTGGGGGGCGCCGCTTGCGG
CCCCCCAGCATCGATCGTCGCTCCTTCGCAAATGCCTTCCTATCATACCATCCCCTGTTTCTCTT
TCCTTTCTCTCCATTTTACCATTTACTCCTCTTAACATCCGCTTC
Right flanking sequence: Indices 35013 -- 35512
ATACACCTCGCTTTCATTTTGCAGCCATTATTTTTATTTTTTTCACCATGGCTAAACAAAGGGTC
AAGCTCGCCAAGAAGGGCCCGCCCGAGGGCTACGACAAGATCAAACCGACGCTCGACACGCTCAA
GGCACGGGTGCAGGCCGCGCAGAAGTCGGATCCCACCGCTTCCGCCTCCCAGCGGCGGTGGCCCA
TCGCCAAGGCCGACCGGGCGGTGGCTCGCTACGTGTACGAGATGTTCTACAAACGGAGGGCGATT
TCGAAGGAGCTCTACGACTGGTTGGTGGGCCAGCCCGAGGTGAACGCCGATCTCATTGCCAAGTG
GCGCAAACTGGGGTACGAGAAGTTGTGCTGTGTGCTGTGCATCGTCGGGGACACCACCCACGGCA
CCACCTGTGTGTGCCGGGTGCCCAAGTTGGACAAGCCGGTGGAGTGTGTGACGTGCGGGTGCACC
GGGTGCTCGAGTGAAACAGGGGCGTAAGATTGGGTAAGGGGGGTT
Found at i:35601 original size:11 final size:11
Alignment explanation
Indices: 35587--35611 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
35577 ACACATCCAA
35587 CACATGCCCAG
1 CACATGCCCAG
35598 CACATGCCCAG
1 CACATGCCCAG
35609 CAC
1 CAC
35612 CAGGGGCAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.28, C:0.48, G:0.16, T:0.08
Consensus pattern (11 bp):
CACATGCCCAG
Left flanking sequence: Indices 35087 -- 35586
AAGAAGGGCCCGCCCGAGGGCTACGACAAGATCAAACCGACGCTCGACACGCTCAAGGCACGGGT
GCAGGCCGCGCAGAAGTCGGATCCCACCGCTTCCGCCTCCCAGCGGCGGTGGCCCATCGCCAAGG
CCGACCGGGCGGTGGCTCGCTACGTGTACGAGATGTTCTACAAACGGAGGGCGATTTCGAAGGAG
CTCTACGACTGGTTGGTGGGCCAGCCCGAGGTGAACGCCGATCTCATTGCCAAGTGGCGCAAACT
GGGGTACGAGAAGTTGTGCTGTGTGCTGTGCATCGTCGGGGACACCACCCACGGCACCACCTGTG
TGTGCCGGGTGCCCAAGTTGGACAAGCCGGTGGAGTGTGTGACGTGCGGGTGCACCGGGTGCTCG
AGTGAAACAGGGGCGTAAGATTGGGTAAGGGGGGTTGTTGATTGTTTGTCGGTTTGATTGCGATG
ATCTACTGGCGCGATGTGCTGTGCGGTGCAACGGCACACATCCAA
Right flanking sequence: Indices 35612 -- 36111
CAGGGGCAAAAGTCTAGTGATGGTGGCTGATCTAAAGGACCAGGCTACGAATAGCCGGAATAGCC
AATCCGCCAATCTGGTTGAGGCTCGTTAAAGGGATGTCTCTGTTATTGTGTGCTGTGGTAGAAGC
ATGGCTTATGGTAGTTCCACGGCTCCGTTACTGAGCAACAAACACGCTCACCGGGGAGACAGTTT
CGGAGGGTCCAAGCGAGTCTGAGCTGATCGTCTGCATATCCATTGAAGACCACGGATGGCTCTCT
GACTGTCAGTCTATCCATCGAAGGCCACAAATGTTCTCTCTGATGTTCAAATGTCTCTAGCCGCC
AGAGTTTGGTTGGGCTCTGTGACCACTCTCTATGACCACTCCCAGTATAGAAAATGAATAATGAA
CACTAAGATAAAGCAAAGAGGCAAAGAAAATGCTATTGTTAAATCGTCGTCAAACATGAAACCAA
GATCGTTCTCTGGGGCACCTTAATGGTACCTTTGATGCCTTTCGC
Found at i:36640 original size:21 final size:21
Alignment explanation
Indices: 36614--36654 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
36604 TCACCACACC
*
36614 AGCACCACCATAACCGTCCCT
1 AGCACCACCATAACCATCCCT
*
36635 AGCACCATCATAACCATCCC
1 AGCACCACCATAACCATCCC
36655 AACCACACCA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.32, C:0.46, G:0.07, T:0.15
Consensus pattern (21 bp):
AGCACCACCATAACCATCCCT
Left flanking sequence: Indices 36114 -- 36613
ATAGTCCTACCTAGTCCTCTTTGTCTAGAATCGAGTAGACTACTGCCTCCTCAACCAGCTCTGAA
ACACGAGACCAACACCAGTGCTTCACTACGCTGAACAAGAACACACTAAGCTCCTCATCACTATA
CAAGCACCTATTCTGATTCTTTGGACACCCAGAGAAATACATTTTAGTTCTACATTACCTAATAC
TCTTCCTTGGACAGAATGTTTATTTGAACCACCATTTTTTAAAATGGTCTTAAAGTTAAGTCATC
TCTAATCTATCACAATAATAACGTTGTTAAGTTGTAAAAATTCTTGATTTAGAAATATCATAGGC
CAATTCGTAAATACTACCTAAAACGTCCGGGTGAGCTGAACCACTCCCCACCACACCCCCACCCG
AGCCCCCATCCCGCCCCAGAAGGCGTTGGGGGGTCTGGGGGGCGCCGCTCGCGGCCCCCCAGCAC
TCGCGCCGACGACCTCCTCACCACTCCCTCCTCCCTCACCACACC
Right flanking sequence: Indices 36655 -- 37154
AACCACACCAACAACCAACACCACACACCAACCACAACCATACCACCCCACAACCTACCAACATC
CTTCAATTATATCCATTAATCCTATACCTATATTACAAACCAGTCCCAATCCCATTATTCGTCGG
CGTCGGTCGCCGTGCCCGAGCGCGACCCGCGTCGCCCCGGGGACCCGCCCCCAGACTCGGCGCGC
CGGAGATCGCCCATCAAGTTGCGCGAGGTCACGGGGCTCAGCTGGGTGGCGCGGCGGCGCCCCGG
CGACGGCCACGGCCGCAACACCAACTCGTCGTCGTCGTACGAGTTGAACACCGCGCGGTGGTTCA
GGTGCACCAACGGCAGGTAGAACTCCTCGAGGTACAGCGGCAGGTTCCAGAGGCGGCGCCCGTGG
GTCTGGGGCGTGCGGAGCGCCCGCAACGGCGTCTTGGTCTGGGGGGTGGCCTGGTGGGGCGTCGC
CGCCGCCCGGGGCAGCGGCCGCGGCAGCAGGTGCCCCCGGGGCAG
Found at i:38063 original size:15 final size:15
Alignment explanation
Indices: 38043--38076 Score: 59
Period size: 15 Copynumber: 2.3 Consensus size: 15
38033 GCGTGGTGGC
38043 GGCGAACGAGGAGGA
1 GGCGAACGAGGAGGA
*
38058 GGCGAACGAGGAGGC
1 GGCGAACGAGGAGGA
38073 GGCG
1 GGCG
38077 GAGGCGGCGG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.26, C:0.18, G:0.56, T:0.00
Consensus pattern (15 bp):
GGCGAACGAGGAGGA
Left flanking sequence: Indices 37543 -- 38042
AACGGGGCGCGGCGGTGCAACTGGTCCATGACCTCGTGGTAGCTCAGCTTGCGCACCAGCTTCAG
CTTGAGGAACTGGTCCTCGCAGCCGGGCTTGATGCACCAGAAGTGGCCCTTGCCGTCCTTCAGCT
TGTCGCCCTTGACAAACGCCTTGTTGAGCAGCAAGTTGTGGCGGATCAGGTTCTGCCACCCGACG
TCCTCGCGCTTGTAGTACTTGAAGGTGTGGGAGATCCAGGCGTAGATCTGCGAGAGCGTGAGTTT
CTTGTCGTGGTGGGACAAGATCAGGATGCCGATGAGCGTGGCGTACAGGTAGGGGGGTTTTTCTT
CCAGCGAAAGGTCGAACGCCTCTTCCTTGAGCTCCTTCTTGGTCTTCTTGCGCCGTTTCTCCCGG
GGCTTGGTGGTGGCGGGGTCGATGAAGAGGGGCGCCTTCGGGGGCGACGAGAACGCCGGCAGCAA
CATGAGGGGCGGCGGCGGGGCAAACACCAGCTGGGGCGTGGTGGC
Right flanking sequence: Indices 38077 -- 38576
GAGGCGGCGGAGGAGCCGGGGGGCGCGTGCCCCGGGGCAGCGCCAGCACCGCTGGCAGCACCAGC
AGCACCGGCACCGGCAGCACCGGCACCAGCACCGGCACCGGCAACACTGGCACCGTAGTCAGCAC
TGGTGTCGGCGCTGGTGAGGGACTCCCCCAGCGCGGTGCGCCCCGCGGGGTGGGCGGTGTACATG
GAGTCGAGGGCGACGGACGCGGCGGCAGTGCTCTTGAGAGGCACGCCAGCCATGCCCGCCATCCC
CGCCATGCCAAAGTCGTCGCGGGCCAAGTCCAACGGCATCGCCTTTTGCAGCGGGTGGTTTCGGA
GCGCGGTTTTGTCCAGCAACGGGACACGGGGGTAGGGCATCATCGGCGCGGCGGCGGAGTGGGGC
GGCGCGCGGGTCTGAGCGGGAGATGGAGGAGGGTGTGCGGAGGGGCGATGGTGCGGTGGTGCGGT
GGGCTCGTATTTTTTTGTGCCGCTGCCGCGCTGGTGTCGCTATAT
Found at i:38152 original size:6 final size:6
Alignment explanation
Indices: 38143--38184 Score: 54
Period size: 6 Copynumber: 7.5 Consensus size: 6
38133 AGCACCAGCA
*
38143 GCACCG GCACCG GCA--- GCACCG GCACCA GCACCG GCACCG GCA
1 GCACCG GCACCG GCACCG GCACCG GCACCG GCACCG GCACCG GCA
38185 ACACTGGCAC
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
3 3 0.10
6 28 0.90
ACGTcount: A:0.21, C:0.48, G:0.31, T:0.00
Consensus pattern (6 bp):
GCACCG
Left flanking sequence: Indices 37643 -- 38142
ACCAGAAGTGGCCCTTGCCGTCCTTCAGCTTGTCGCCCTTGACAAACGCCTTGTTGAGCAGCAAG
TTGTGGCGGATCAGGTTCTGCCACCCGACGTCCTCGCGCTTGTAGTACTTGAAGGTGTGGGAGAT
CCAGGCGTAGATCTGCGAGAGCGTGAGTTTCTTGTCGTGGTGGGACAAGATCAGGATGCCGATGA
GCGTGGCGTACAGGTAGGGGGGTTTTTCTTCCAGCGAAAGGTCGAACGCCTCTTCCTTGAGCTCC
TTCTTGGTCTTCTTGCGCCGTTTCTCCCGGGGCTTGGTGGTGGCGGGGTCGATGAAGAGGGGCGC
CTTCGGGGGCGACGAGAACGCCGGCAGCAACATGAGGGGCGGCGGCGGGGCAAACACCAGCTGGG
GCGTGGTGGCGGCGAACGAGGAGGAGGCGAACGAGGAGGCGGCGGAGGCGGCGGAGGAGCCGGGG
GGCGCGTGCCCCGGGGCAGCGCCAGCACCGCTGGCAGCACCAGCA
Right flanking sequence: Indices 38185 -- 38684
ACACTGGCACCGTAGTCAGCACTGGTGTCGGCGCTGGTGAGGGACTCCCCCAGCGCGGTGCGCCC
CGCGGGGTGGGCGGTGTACATGGAGTCGAGGGCGACGGACGCGGCGGCAGTGCTCTTGAGAGGCA
CGCCAGCCATGCCCGCCATCCCCGCCATGCCAAAGTCGTCGCGGGCCAAGTCCAACGGCATCGCC
TTTTGCAGCGGGTGGTTTCGGAGCGCGGTTTTGTCCAGCAACGGGACACGGGGGTAGGGCATCAT
CGGCGCGGCGGCGGAGTGGGGCGGCGCGCGGGTCTGAGCGGGAGATGGAGGAGGGTGTGCGGAGG
GGCGATGGTGCGGTGGTGCGGTGGGCTCGTATTTTTTTGTGCCGCTGCCGCGCTGGTGTCGCTAT
ATAGGTGCGGGCGCGGTGCCAAATCGACGCGACGCGATTATTTTTTATGCACAGAACGGCAGTGA
GGCGCCCCCTGGTGATTGCGGAGCAAGCCTGTTTCACGTCGCGTG
Found at i:38158 original size:15 final size:15
Alignment explanation
Indices: 38134--38196 Score: 78
Period size: 15 Copynumber: 4.4 Consensus size: 15
38124 ACCGCTGGCA
*
38134 GCACCAGCAGCACCG
1 GCACCGGCAGCACCG
38149 GCACCGGCAGCACCG
1 GCACCGGCAGCACCG
38164 GCA-C--CAGCACCG
1 GCACCGGCAGCACCG
* *
38176 GCACCGGCAACACTG
1 GCACCGGCAGCACCG
38191 GCACCG
1 GCACCG
38197 TAGTCAGCAC
Statistics
Matches: 42, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
12 11 0.26
13 1 0.02
14 1 0.02
15 29 0.69
ACGTcount: A:0.24, C:0.46, G:0.29, T:0.02
Consensus pattern (15 bp):
GCACCGGCAGCACCG
Left flanking sequence: Indices 37634 -- 38133
GCTTGATGCACCAGAAGTGGCCCTTGCCGTCCTTCAGCTTGTCGCCCTTGACAAACGCCTTGTTG
AGCAGCAAGTTGTGGCGGATCAGGTTCTGCCACCCGACGTCCTCGCGCTTGTAGTACTTGAAGGT
GTGGGAGATCCAGGCGTAGATCTGCGAGAGCGTGAGTTTCTTGTCGTGGTGGGACAAGATCAGGA
TGCCGATGAGCGTGGCGTACAGGTAGGGGGGTTTTTCTTCCAGCGAAAGGTCGAACGCCTCTTCC
TTGAGCTCCTTCTTGGTCTTCTTGCGCCGTTTCTCCCGGGGCTTGGTGGTGGCGGGGTCGATGAA
GAGGGGCGCCTTCGGGGGCGACGAGAACGCCGGCAGCAACATGAGGGGCGGCGGCGGGGCAAACA
CCAGCTGGGGCGTGGTGGCGGCGAACGAGGAGGAGGCGAACGAGGAGGCGGCGGAGGCGGCGGAG
GAGCCGGGGGGCGCGTGCCCCGGGGCAGCGCCAGCACCGCTGGCA
Right flanking sequence: Indices 38197 -- 38696
TAGTCAGCACTGGTGTCGGCGCTGGTGAGGGACTCCCCCAGCGCGGTGCGCCCCGCGGGGTGGGC
GGTGTACATGGAGTCGAGGGCGACGGACGCGGCGGCAGTGCTCTTGAGAGGCACGCCAGCCATGC
CCGCCATCCCCGCCATGCCAAAGTCGTCGCGGGCCAAGTCCAACGGCATCGCCTTTTGCAGCGGG
TGGTTTCGGAGCGCGGTTTTGTCCAGCAACGGGACACGGGGGTAGGGCATCATCGGCGCGGCGGC
GGAGTGGGGCGGCGCGCGGGTCTGAGCGGGAGATGGAGGAGGGTGTGCGGAGGGGCGATGGTGCG
GTGGTGCGGTGGGCTCGTATTTTTTTGTGCCGCTGCCGCGCTGGTGTCGCTATATAGGTGCGGGC
GCGGTGCCAAATCGACGCGACGCGATTATTTTTTATGCACAGAACGGCAGTGAGGCGCCCCCTGG
TGATTGCGGAGCAAGCCTGTTTCACGTCGCGTGGAGGAGCGGGAG
Found at i:38171 original size:27 final size:27
Alignment explanation
Indices: 38141--38195 Score: 92
Period size: 27 Copynumber: 2.0 Consensus size: 27
38131 GCAGCACCAG
*
38141 CAGCACCGGCACCGGCAGCACCGGCAC
1 CAGCACCGGCACCGGCAACACCGGCAC
*
38168 CAGCACCGGCACCGGCAACACTGGCAC
1 CAGCACCGGCACCGGCAACACCGGCAC
38195 C
1 C
38196 GTAGTCAGCA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.24, C:0.47, G:0.27, T:0.02
Consensus pattern (27 bp):
CAGCACCGGCACCGGCAACACCGGCAC
Left flanking sequence: Indices 37641 -- 38140
GCACCAGAAGTGGCCCTTGCCGTCCTTCAGCTTGTCGCCCTTGACAAACGCCTTGTTGAGCAGCA
AGTTGTGGCGGATCAGGTTCTGCCACCCGACGTCCTCGCGCTTGTAGTACTTGAAGGTGTGGGAG
ATCCAGGCGTAGATCTGCGAGAGCGTGAGTTTCTTGTCGTGGTGGGACAAGATCAGGATGCCGAT
GAGCGTGGCGTACAGGTAGGGGGGTTTTTCTTCCAGCGAAAGGTCGAACGCCTCTTCCTTGAGCT
CCTTCTTGGTCTTCTTGCGCCGTTTCTCCCGGGGCTTGGTGGTGGCGGGGTCGATGAAGAGGGGC
GCCTTCGGGGGCGACGAGAACGCCGGCAGCAACATGAGGGGCGGCGGCGGGGCAAACACCAGCTG
GGGCGTGGTGGCGGCGAACGAGGAGGAGGCGAACGAGGAGGCGGCGGAGGCGGCGGAGGAGCCGG
GGGGCGCGTGCCCCGGGGCAGCGCCAGCACCGCTGGCAGCACCAG
Right flanking sequence: Indices 38196 -- 38695
GTAGTCAGCACTGGTGTCGGCGCTGGTGAGGGACTCCCCCAGCGCGGTGCGCCCCGCGGGGTGGG
CGGTGTACATGGAGTCGAGGGCGACGGACGCGGCGGCAGTGCTCTTGAGAGGCACGCCAGCCATG
CCCGCCATCCCCGCCATGCCAAAGTCGTCGCGGGCCAAGTCCAACGGCATCGCCTTTTGCAGCGG
GTGGTTTCGGAGCGCGGTTTTGTCCAGCAACGGGACACGGGGGTAGGGCATCATCGGCGCGGCGG
CGGAGTGGGGCGGCGCGCGGGTCTGAGCGGGAGATGGAGGAGGGTGTGCGGAGGGGCGATGGTGC
GGTGGTGCGGTGGGCTCGTATTTTTTTGTGCCGCTGCCGCGCTGGTGTCGCTATATAGGTGCGGG
CGCGGTGCCAAATCGACGCGACGCGATTATTTTTTATGCACAGAACGGCAGTGAGGCGCCCCCTG
GTGATTGCGGAGCAAGCCTGTTTCACGTCGCGTGGAGGAGCGGGA
Found at i:38784 original size:14 final size:14
Alignment explanation
Indices: 38765--38795 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
38755 GGGTGCGGGT
*
38765 GTGGGAGTTGGAGA
1 GTGGGAGTGGGAGA
38779 GTGGGAGTGGGAGA
1 GTGGGAGTGGGAGA
38793 GTG
1 GTG
38796 CGGGTTGTGG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.19, C:0.00, G:0.61, T:0.19
Consensus pattern (14 bp):
GTGGGAGTGGGAGA
Left flanking sequence: Indices 38265 -- 38764
GTACATGGAGTCGAGGGCGACGGACGCGGCGGCAGTGCTCTTGAGAGGCACGCCAGCCATGCCCG
CCATCCCCGCCATGCCAAAGTCGTCGCGGGCCAAGTCCAACGGCATCGCCTTTTGCAGCGGGTGG
TTTCGGAGCGCGGTTTTGTCCAGCAACGGGACACGGGGGTAGGGCATCATCGGCGCGGCGGCGGA
GTGGGGCGGCGCGCGGGTCTGAGCGGGAGATGGAGGAGGGTGTGCGGAGGGGCGATGGTGCGGTG
GTGCGGTGGGCTCGTATTTTTTTGTGCCGCTGCCGCGCTGGTGTCGCTATATAGGTGCGGGCGCG
GTGCCAAATCGACGCGACGCGATTATTTTTTATGCACAGAACGGCAGTGAGGCGCCCCCTGGTGA
TTGCGGAGCAAGCCTGTTTCACGTCGCGTGGAGGAGCGGGAGCACCTAGCAACGGGGGAGGGAGA
GGTGTAGAGTGGTGCGTAGTGGGAGAGTGGGAAGTGGGTGCGGGT
Right flanking sequence: Indices 38796 -- 39295
CGGGTTGTGGGAGAGTGTGAGGAGTAGGAGGCGTAGGGACAGACGGAAGGTGGAGGAAGCACGAC
TACCGCCAGGAAGTACAGCAAGGAGAAACGAGGAGGAAAGAGGAGAGGGGAGAGGGAGAAAGGGA
GAGGGAAACAGGGTAGAGCGTATTAAAGGATACAGAGAAGAGACTACGTAGAACCAGGTCGTCCA
CTCGTCAGTCGTCAGTAGTCCAGTCGCCAGTTGTCAGTCGTCCAGCGTCCAGTCGTCCACACCCT
CGCATCTTTGTTCCTGTAGACCGCACGGGTCATCCGCGGTTCGACCCGCGGCTGCCACCGACTAT
TGTTGACGCGTTTAGAGGTGCGGTGCAGCTGCACCGCGCAAGCACCGGCTGAGCAGGCGGACCAC
ACGGCGTACGAGACCACCACCCGAGCCACCAGCGGCCCCTTGCTCGCTTTGTTACCCGGGTGCCA
TCACCGCGCGGCTCAGTCCCGTTTGTGGCGTCATCTCCGCATATT
Found at i:39003 original size:15 final size:16
Alignment explanation
Indices: 38983--39050 Score: 56
Period size: 15 Copynumber: 4.6 Consensus size: 16
38973 GTAGAACCAG
38983 GTCGTCCACTCGT-CA
1 GTCGTCCACTCGTCCA
* *
38998 GTCGT-CAGTAGTCCA
1 GTCGTCCACTCGTCCA
* *
39013 GTCG-CCAGTTGT-CA
1 GTCGTCCACTCGTCCA
*
39027 GTCGTCCA-GCGTCCA
1 GTCGTCCACTCGTCCA
39042 GTCGTCCAC
1 GTCGTCCAC
39051 ACCCTCGCAT
Statistics
Matches: 43, Mismatches: 5, Indels: 9
0.75 0.09 0.16
Matches are distributed among these distances:
14 13 0.30
15 30 0.70
ACGTcount: A:0.15, C:0.35, G:0.25, T:0.25
Consensus pattern (16 bp):
GTCGTCCACTCGTCCA
Left flanking sequence: Indices 38483 -- 38982
CGGGAGATGGAGGAGGGTGTGCGGAGGGGCGATGGTGCGGTGGTGCGGTGGGCTCGTATTTTTTT
GTGCCGCTGCCGCGCTGGTGTCGCTATATAGGTGCGGGCGCGGTGCCAAATCGACGCGACGCGAT
TATTTTTTATGCACAGAACGGCAGTGAGGCGCCCCCTGGTGATTGCGGAGCAAGCCTGTTTCACG
TCGCGTGGAGGAGCGGGAGCACCTAGCAACGGGGGAGGGAGAGGTGTAGAGTGGTGCGTAGTGGG
AGAGTGGGAAGTGGGTGCGGGTGTGGGAGTTGGAGAGTGGGAGTGGGAGAGTGCGGGTTGTGGGA
GAGTGTGAGGAGTAGGAGGCGTAGGGACAGACGGAAGGTGGAGGAAGCACGACTACCGCCAGGAA
GTACAGCAAGGAGAAACGAGGAGGAAAGAGGAGAGGGGAGAGGGAGAAAGGGAGAGGGAAACAGG
GTAGAGCGTATTAAAGGATACAGAGAAGAGACTACGTAGAACCAG
Right flanking sequence: Indices 39051 -- 39550
ACCCTCGCATCTTTGTTCCTGTAGACCGCACGGGTCATCCGCGGTTCGACCCGCGGCTGCCACCG
ACTATTGTTGACGCGTTTAGAGGTGCGGTGCAGCTGCACCGCGCAAGCACCGGCTGAGCAGGCGG
ACCACACGGCGTACGAGACCACCACCCGAGCCACCAGCGGCCCCTTGCTCGCTTTGTTACCCGGG
TGCCATCACCGCGCGGCTCAGTCCCGTTTGTGGCGTCATCTCCGCATATTGATGCCCCCCGTGAT
GAAACGACAGGAGCAGAGAATCGAACCATTGCTGGAAGTAGCAGAGGCTAAGTAGAAGAGACGGA
AAAGGAAGAGAAAAGGAAGAGAAAGGTGGAGGAAAAGGTAGAGAAAAGGGTAGAGAAAAAGAAAA
AGAGCGGAAGAAGGCATAGACGCGTTGTATTGGTATTAGGTTATAGTGTAGCTATAGTGGTTCGC
TGATCTAGGCTGATCTGGCTAGGGTTCGTGTGGCTGGTTGCCGGA
Found at i:39004 original size:7 final size:7
Alignment explanation
Indices: 38992--39047 Score: 51
Period size: 7 Copynumber: 7.7 Consensus size: 7
38982 GGTCGTCCAC
38992 TCGTCAG
1 TCGTCAG
38999 TCGTCAG
1 TCGTCAG
*
39006 TAGTCCAG
1 TCGT-CAG
*
39014 TCGCCAG
1 TCGTCAG
*
39021 TTGTCAG
1 TCGTCAG
39028 TCGTCCAG
1 TCGT-CAG
39036 -CGTCCAG
1 TCGT-CAG
39043 TCGTC
1 TCGTC
39048 CACACCCTCG
Statistics
Matches: 40, Mismatches: 6, Indels: 6
0.77 0.12 0.12
Matches are distributed among these distances:
7 29 0.73
8 11 0.28
ACGTcount: A:0.14, C:0.32, G:0.27, T:0.27
Consensus pattern (7 bp):
TCGTCAG
Left flanking sequence: Indices 38492 -- 38991
GAGGAGGGTGTGCGGAGGGGCGATGGTGCGGTGGTGCGGTGGGCTCGTATTTTTTTGTGCCGCTG
CCGCGCTGGTGTCGCTATATAGGTGCGGGCGCGGTGCCAAATCGACGCGACGCGATTATTTTTTA
TGCACAGAACGGCAGTGAGGCGCCCCCTGGTGATTGCGGAGCAAGCCTGTTTCACGTCGCGTGGA
GGAGCGGGAGCACCTAGCAACGGGGGAGGGAGAGGTGTAGAGTGGTGCGTAGTGGGAGAGTGGGA
AGTGGGTGCGGGTGTGGGAGTTGGAGAGTGGGAGTGGGAGAGTGCGGGTTGTGGGAGAGTGTGAG
GAGTAGGAGGCGTAGGGACAGACGGAAGGTGGAGGAAGCACGACTACCGCCAGGAAGTACAGCAA
GGAGAAACGAGGAGGAAAGAGGAGAGGGGAGAGGGAGAAAGGGAGAGGGAAACAGGGTAGAGCGT
ATTAAAGGATACAGAGAAGAGACTACGTAGAACCAGGTCGTCCAC
Right flanking sequence: Indices 39048 -- 39547
CACACCCTCGCATCTTTGTTCCTGTAGACCGCACGGGTCATCCGCGGTTCGACCCGCGGCTGCCA
CCGACTATTGTTGACGCGTTTAGAGGTGCGGTGCAGCTGCACCGCGCAAGCACCGGCTGAGCAGG
CGGACCACACGGCGTACGAGACCACCACCCGAGCCACCAGCGGCCCCTTGCTCGCTTTGTTACCC
GGGTGCCATCACCGCGCGGCTCAGTCCCGTTTGTGGCGTCATCTCCGCATATTGATGCCCCCCGT
GATGAAACGACAGGAGCAGAGAATCGAACCATTGCTGGAAGTAGCAGAGGCTAAGTAGAAGAGAC
GGAAAAGGAAGAGAAAAGGAAGAGAAAGGTGGAGGAAAAGGTAGAGAAAAGGGTAGAGAAAAAGA
AAAAGAGCGGAAGAAGGCATAGACGCGTTGTATTGGTATTAGGTTATAGTGTAGCTATAGTGGTT
CGCTGATCTAGGCTGATCTGGCTAGGGTTCGTGTGGCTGGTTGCC
Found at i:39021 original size:22 final size:22
Alignment explanation
Indices: 38986--39047 Score: 72
Period size: 22 Copynumber: 2.8 Consensus size: 22
38976 GAACCAGGTC
* *
38986 GTCCACTCGTCAGTCGTCAGTA
1 GTCCAGTCGCCAGTCGTCAGTA
* *
39008 GTCCAGTCGCCAGTTGTCAGTC
1 GTCCAGTCGCCAGTCGTCAGTA
39030 GTCCAG-CGTCCAGTCGTC
1 GTCCAGTCG-CCAGTCGTC
39048 CACACCCTCG
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
21 2 0.06
22 32 0.94
ACGTcount: A:0.15, C:0.34, G:0.26, T:0.26
Consensus pattern (22 bp):
GTCCAGTCGCCAGTCGTCAGTA
Left flanking sequence: Indices 38486 -- 38985
GAGATGGAGGAGGGTGTGCGGAGGGGCGATGGTGCGGTGGTGCGGTGGGCTCGTATTTTTTTGTG
CCGCTGCCGCGCTGGTGTCGCTATATAGGTGCGGGCGCGGTGCCAAATCGACGCGACGCGATTAT
TTTTTATGCACAGAACGGCAGTGAGGCGCCCCCTGGTGATTGCGGAGCAAGCCTGTTTCACGTCG
CGTGGAGGAGCGGGAGCACCTAGCAACGGGGGAGGGAGAGGTGTAGAGTGGTGCGTAGTGGGAGA
GTGGGAAGTGGGTGCGGGTGTGGGAGTTGGAGAGTGGGAGTGGGAGAGTGCGGGTTGTGGGAGAG
TGTGAGGAGTAGGAGGCGTAGGGACAGACGGAAGGTGGAGGAAGCACGACTACCGCCAGGAAGTA
CAGCAAGGAGAAACGAGGAGGAAAGAGGAGAGGGGAGAGGGAGAAAGGGAGAGGGAAACAGGGTA
GAGCGTATTAAAGGATACAGAGAAGAGACTACGTAGAACCAGGTC
Right flanking sequence: Indices 39048 -- 39547
CACACCCTCGCATCTTTGTTCCTGTAGACCGCACGGGTCATCCGCGGTTCGACCCGCGGCTGCCA
CCGACTATTGTTGACGCGTTTAGAGGTGCGGTGCAGCTGCACCGCGCAAGCACCGGCTGAGCAGG
CGGACCACACGGCGTACGAGACCACCACCCGAGCCACCAGCGGCCCCTTGCTCGCTTTGTTACCC
GGGTGCCATCACCGCGCGGCTCAGTCCCGTTTGTGGCGTCATCTCCGCATATTGATGCCCCCCGT
GATGAAACGACAGGAGCAGAGAATCGAACCATTGCTGGAAGTAGCAGAGGCTAAGTAGAAGAGAC
GGAAAAGGAAGAGAAAAGGAAGAGAAAGGTGGAGGAAAAGGTAGAGAAAAGGGTAGAGAAAAAGA
AAAAGAGCGGAAGAAGGCATAGACGCGTTGTATTGGTATTAGGTTATAGTGTAGCTATAGTGGTT
CGCTGATCTAGGCTGATCTGGCTAGGGTTCGTGTGGCTGGTTGCC
Found at i:39399 original size:22 final size:22
Alignment explanation
Indices: 39374--39434 Score: 70
Period size: 22 Copynumber: 2.7 Consensus size: 22
39364 AGAAGAGACG
*
39374 GAAAAGGAAGAGAAAAGGAAGA
1 GAAAAGGTAGAGAAAAGGAAGA
* *
39396 G-AAAGGTGGAGGAAAAGGTAGA
1 GAAAAGGTAGA-GAAAAGGAAGA
39418 GAAAAGGGTAGAGAAAA
1 GAAAA-GGTAGAGAAAA
39435 AGAAAAAGAG
Statistics
Matches: 32, Mismatches: 4, Indels: 5
0.78 0.10 0.12
Matches are distributed among these distances:
21 7 0.22
22 12 0.38
23 8 0.25
24 5 0.16
ACGTcount: A:0.56, C:0.00, G:0.39, T:0.05
Consensus pattern (22 bp):
GAAAAGGTAGAGAAAAGGAAGA
Left flanking sequence: Indices 38874 -- 39373
TACAGCAAGGAGAAACGAGGAGGAAAGAGGAGAGGGGAGAGGGAGAAAGGGAGAGGGAAACAGGG
TAGAGCGTATTAAAGGATACAGAGAAGAGACTACGTAGAACCAGGTCGTCCACTCGTCAGTCGTC
AGTAGTCCAGTCGCCAGTTGTCAGTCGTCCAGCGTCCAGTCGTCCACACCCTCGCATCTTTGTTC
CTGTAGACCGCACGGGTCATCCGCGGTTCGACCCGCGGCTGCCACCGACTATTGTTGACGCGTTT
AGAGGTGCGGTGCAGCTGCACCGCGCAAGCACCGGCTGAGCAGGCGGACCACACGGCGTACGAGA
CCACCACCCGAGCCACCAGCGGCCCCTTGCTCGCTTTGTTACCCGGGTGCCATCACCGCGCGGCT
CAGTCCCGTTTGTGGCGTCATCTCCGCATATTGATGCCCCCCGTGATGAAACGACAGGAGCAGAG
AATCGAACCATTGCTGGAAGTAGCAGAGGCTAAGTAGAAGAGACG
Right flanking sequence: Indices 39435 -- 39934
AGAAAAAGAGCGGAAGAAGGCATAGACGCGTTGTATTGGTATTAGGTTATAGTGTAGCTATAGTG
GTTCGCTGATCTAGGCTGATCTGGCTAGGGTTCGTGTGGCTGGTTGCCGGATCGGTCGACCCCGT
GGGACTGAAGCCACGGTGGATGAATGGGAAGAATGGGGATGGACGTGATGAACGTGATGAACGTG
ATGAACGCGATGAACGTTATGAACGTGATGAACGTGAATGAGCGTGGATGAACGAGGACGGGCAG
TTGGTCCGACGGACTGGTCACAGAAACGCGTCTCGCAGCAAGGTAGCGGGTGGTTAGCCCACCGG
ATTAGACACCGTTCTACTAGAAACTGTCCAAGTAGACTTACCAACTATACACTTGCTCAGTAGAC
ACCGTCCAACCTTACACCTACCAATTTAGCCACCAAGCCAACTTAGCCACACATGGCCCCCGCTC
CCCCCTTTCCCCCATCCTCCCACTCGGATCACCCACATCGTAGAT
Found at i:39414 original size:12 final size:11
Alignment explanation
Indices: 39374--39434 Score: 70
Period size: 12 Copynumber: 5.5 Consensus size: 11
39364 AGAAGAGACG
*
39374 GAAAAGGAAGA
1 GAAAAGGTAGA
*
39385 GAAAAGGAAGA
1 GAAAAGGTAGA
*
39396 G-AAAGGTGGA
1 GAAAAGGTAGA
39406 GGAAAAGGTAGA
1 -GAAAAGGTAGA
39418 GAAAAGGGTAGA
1 GAAAA-GGTAGA
39430 GAAAA
1 GAAAA
39435 AGAAAAAGAG
Statistics
Matches: 44, Mismatches: 3, Indels: 5
0.85 0.06 0.10
Matches are distributed among these distances:
10 7 0.16
11 18 0.41
12 19 0.43
ACGTcount: A:0.56, C:0.00, G:0.39, T:0.05
Consensus pattern (11 bp):
GAAAAGGTAGA
Left flanking sequence: Indices 38874 -- 39373
TACAGCAAGGAGAAACGAGGAGGAAAGAGGAGAGGGGAGAGGGAGAAAGGGAGAGGGAAACAGGG
TAGAGCGTATTAAAGGATACAGAGAAGAGACTACGTAGAACCAGGTCGTCCACTCGTCAGTCGTC
AGTAGTCCAGTCGCCAGTTGTCAGTCGTCCAGCGTCCAGTCGTCCACACCCTCGCATCTTTGTTC
CTGTAGACCGCACGGGTCATCCGCGGTTCGACCCGCGGCTGCCACCGACTATTGTTGACGCGTTT
AGAGGTGCGGTGCAGCTGCACCGCGCAAGCACCGGCTGAGCAGGCGGACCACACGGCGTACGAGA
CCACCACCCGAGCCACCAGCGGCCCCTTGCTCGCTTTGTTACCCGGGTGCCATCACCGCGCGGCT
CAGTCCCGTTTGTGGCGTCATCTCCGCATATTGATGCCCCCCGTGATGAAACGACAGGAGCAGAG
AATCGAACCATTGCTGGAAGTAGCAGAGGCTAAGTAGAAGAGACG
Right flanking sequence: Indices 39435 -- 39934
AGAAAAAGAGCGGAAGAAGGCATAGACGCGTTGTATTGGTATTAGGTTATAGTGTAGCTATAGTG
GTTCGCTGATCTAGGCTGATCTGGCTAGGGTTCGTGTGGCTGGTTGCCGGATCGGTCGACCCCGT
GGGACTGAAGCCACGGTGGATGAATGGGAAGAATGGGGATGGACGTGATGAACGTGATGAACGTG
ATGAACGCGATGAACGTTATGAACGTGATGAACGTGAATGAGCGTGGATGAACGAGGACGGGCAG
TTGGTCCGACGGACTGGTCACAGAAACGCGTCTCGCAGCAAGGTAGCGGGTGGTTAGCCCACCGG
ATTAGACACCGTTCTACTAGAAACTGTCCAAGTAGACTTACCAACTATACACTTGCTCAGTAGAC
ACCGTCCAACCTTACACCTACCAATTTAGCCACCAAGCCAACTTAGCCACACATGGCCCCCGCTC
CCCCCTTTCCCCCATCCTCCCACTCGGATCACCCACATCGTAGAT
Found at i:39675 original size:10 final size:9
Alignment explanation
Indices: 39602--39683 Score: 110
Period size: 9 Copynumber: 8.9 Consensus size: 9
39592 GAAGAATGGG
*
39602 GATGGACGT
1 GATGAACGT
39611 GATGAACGT
1 GATGAACGT
39620 GATGAACGT
1 GATGAACGT
*
39629 GATGAACGC
1 GATGAACGT
39638 GATGAACGT
1 GATGAACGT
*
39647 TATGAACGT
1 GATGAACGT
39656 GATGAACGT
1 GATGAACGT
*
39665 GAATGAGCGT
1 G-ATGAACGT
39675 GGATGAACG
1 -GATGAACG
39684 AGGACGGGCA
Statistics
Matches: 64, Mismatches: 7, Indels: 3
0.86 0.09 0.04
Matches are distributed among these distances:
9 50 0.78
10 13 0.20
11 1 0.02
ACGTcount: A:0.32, C:0.12, G:0.35, T:0.21
Consensus pattern (9 bp):
GATGAACGT
Left flanking sequence: Indices 39102 -- 39601
CGCGGCTGCCACCGACTATTGTTGACGCGTTTAGAGGTGCGGTGCAGCTGCACCGCGCAAGCACC
GGCTGAGCAGGCGGACCACACGGCGTACGAGACCACCACCCGAGCCACCAGCGGCCCCTTGCTCG
CTTTGTTACCCGGGTGCCATCACCGCGCGGCTCAGTCCCGTTTGTGGCGTCATCTCCGCATATTG
ATGCCCCCCGTGATGAAACGACAGGAGCAGAGAATCGAACCATTGCTGGAAGTAGCAGAGGCTAA
GTAGAAGAGACGGAAAAGGAAGAGAAAAGGAAGAGAAAGGTGGAGGAAAAGGTAGAGAAAAGGGT
AGAGAAAAAGAAAAAGAGCGGAAGAAGGCATAGACGCGTTGTATTGGTATTAGGTTATAGTGTAG
CTATAGTGGTTCGCTGATCTAGGCTGATCTGGCTAGGGTTCGTGTGGCTGGTTGCCGGATCGGTC
GACCCCGTGGGACTGAAGCCACGGTGGATGAATGGGAAGAATGGG
Right flanking sequence: Indices 39684 -- 40183
AGGACGGGCAGTTGGTCCGACGGACTGGTCACAGAAACGCGTCTCGCAGCAAGGTAGCGGGTGGT
TAGCCCACCGGATTAGACACCGTTCTACTAGAAACTGTCCAAGTAGACTTACCAACTATACACTT
GCTCAGTAGACACCGTCCAACCTTACACCTACCAATTTAGCCACCAAGCCAACTTAGCCACACAT
GGCCCCCGCTCCCCCCTTTCCCCCATCCTCCCACTCGGATCACCCACATCGTAGATCAGAAGACA
GATCCATCTTCCCCGCGCCAATATCCGTCAGTCATTAGCCACGGGGCTTAACCCGTGACTAACCC
GTGGGCAATGTCTCCGACACCTTTTTGTGGCCCCCCTGGCGACACGGCTTTGTACACCCCCTCAC
CCCTGAACGACGCCACGGCGCTGCTGACGACGCTACTGACGACGCTAATGTAACCTCCCTGTACC
ACCGTCGCCAGCAACGGTGATCTACGCATGTTGCTCCCCCTTCGT
Found at i:40834 original size:21 final size:20
Alignment explanation
Indices: 40809--40868 Score: 68
Period size: 21 Copynumber: 2.9 Consensus size: 20
40799 TTGCTTGTGA
40809 CTTTTCAACCTTCTTTTCAAC
1 CTTTTCAACCTT-TTTTCAAC
40830 CTTTTTTCAACC-TTTTTCAAC
1 C--TTTTCAACCTTTTTTCAAC
*
40851 CTTTTCAAACCTTATTTC
1 CTTTTC-AACCTTTTTTC
40869 CTATTCGATC
Statistics
Matches: 34, Mismatches: 1, Indels: 8
0.79 0.02 0.19
Matches are distributed among these distances:
19 5 0.15
20 4 0.12
21 15 0.44
22 1 0.03
23 9 0.26
ACGTcount: A:0.20, C:0.30, G:0.00, T:0.50
Consensus pattern (20 bp):
CTTTTCAACCTTTTTTCAAC
Left flanking sequence: Indices 40309 -- 40808
CGCTACCCCTATTCCGTCTGGTGGGTACGCCTTGGTCTCTATACACAACCTTTGTTAATGTCGTG
GTGGGGACGGTAGAGGGGAAACTACGGCGGTTGGGTGGTAGTAACGTAGTGGGAGGGCATGTGAC
CGCTGGAAACGCTAGTGACAGCTGGAGGGACCGCAGGCGGCGCCCCTCCAGACCTCCCCACCGCT
TAGTTGGTGGGCTACGGTGGATGCTTGGAGCAGTTGCTCATAACAGGTGAGAGTTGTCAGGGTGG
ATGGAGATTACCAGTGATGAGCTTAGTGGCCCCACTGAAGCGACTTCCGTGGTATACCCGTGGGA
TTAGCTTCTATTGTTAGACGTTCTATGGTGGCACGACGTATCCATGGTGGCTTGAACAATACTGC
CAACTTGACGCTTCAACTTAACTACAAATTACGAGCAAAAATGATGACAGTGTGGTAGCCTCGTA
ATACACGCAGCACTGCGTACTCTTTTAGCCGACTCTTGCTTGTGA
Right flanking sequence: Indices 40869 -- 41368
CTATTCGATCGGTTAGTCGTCAATCTGCAAAATAGACTCGCTAGATCCCATCAACCGAGCCAATC
TGTCTACACAACCGGGCACAACCGGGCTACCGTCAAGTCGTGGAATGCTTGGCCCTGCACTACAT
GTGGATTATTGCCAGCGACTAATCTGGATACATGACAGGCAGTTGCCTAAAGGGGACTGCAAAGG
ACCACTACAACTGAAACACTACAACTATATATAGAGACGCACCAAGCCATAAGAAAAGCGTGATA
AAGCATCACACGACGCTCTTCTTTAACTCTACCCCACCACGATCGAATTCTAGTGGTTAATTTTT
ACGACTATGACTATGGTTCCACCAAATTGCTGGTTCCACCAAACAACCTTCGCTCCTTTTCTTGT
CCTTCTCCACAACCACCCCTGTCATCTGTCCTTCTTATTTTCTTCATTTCCTCTTCTATTCTTCT
TCCATTCTTTTTCCTTTCTTCCATCTTCCTTCTCCCCTACTTCCT
Found at i:40838 original size:11 final size:11
Alignment explanation
Indices: 40810--40855 Score: 76
Period size: 11 Copynumber: 4.2 Consensus size: 11
40800 TGCTTGTGAC
40810 TTTTCAACCTT
1 TTTTCAACCTT
40821 CTTTTCAACCTT
1 -TTTTCAACCTT
40833 TTTTCAACC-T
1 TTTTCAACCTT
40843 TTTTCAACCTT
1 TTTTCAACCTT
40854 TT
1 TT
40856 CAAACCTTAT
Statistics
Matches: 33, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
10 10 0.30
11 12 0.36
12 11 0.33
ACGTcount: A:0.17, C:0.28, G:0.00, T:0.54
Consensus pattern (11 bp):
TTTTCAACCTT
Left flanking sequence: Indices 40310 -- 40809
GCTACCCCTATTCCGTCTGGTGGGTACGCCTTGGTCTCTATACACAACCTTTGTTAATGTCGTGG
TGGGGACGGTAGAGGGGAAACTACGGCGGTTGGGTGGTAGTAACGTAGTGGGAGGGCATGTGACC
GCTGGAAACGCTAGTGACAGCTGGAGGGACCGCAGGCGGCGCCCCTCCAGACCTCCCCACCGCTT
AGTTGGTGGGCTACGGTGGATGCTTGGAGCAGTTGCTCATAACAGGTGAGAGTTGTCAGGGTGGA
TGGAGATTACCAGTGATGAGCTTAGTGGCCCCACTGAAGCGACTTCCGTGGTATACCCGTGGGAT
TAGCTTCTATTGTTAGACGTTCTATGGTGGCACGACGTATCCATGGTGGCTTGAACAATACTGCC
AACTTGACGCTTCAACTTAACTACAAATTACGAGCAAAAATGATGACAGTGTGGTAGCCTCGTAA
TACACGCAGCACTGCGTACTCTTTTAGCCGACTCTTGCTTGTGAC
Right flanking sequence: Indices 40856 -- 41355
CAAACCTTATTTCCTATTCGATCGGTTAGTCGTCAATCTGCAAAATAGACTCGCTAGATCCCATC
AACCGAGCCAATCTGTCTACACAACCGGGCACAACCGGGCTACCGTCAAGTCGTGGAATGCTTGG
CCCTGCACTACATGTGGATTATTGCCAGCGACTAATCTGGATACATGACAGGCAGTTGCCTAAAG
GGGACTGCAAAGGACCACTACAACTGAAACACTACAACTATATATAGAGACGCACCAAGCCATAA
GAAAAGCGTGATAAAGCATCACACGACGCTCTTCTTTAACTCTACCCCACCACGATCGAATTCTA
GTGGTTAATTTTTACGACTATGACTATGGTTCCACCAAATTGCTGGTTCCACCAAACAACCTTCG
CTCCTTTTCTTGTCCTTCTCCACAACCACCCCTGTCATCTGTCCTTCTTATTTTCTTCATTTCCT
CTTCTATTCTTCTTCCATTCTTTTTCCTTTCTTCCATCTTCCTTC
Found at i:40845 original size:10 final size:10
Alignment explanation
Indices: 40810--40868 Score: 66
Period size: 12 Copynumber: 5.5 Consensus size: 10
40800 TGCTTGTGAC
40810 TTTTCAACCTT
1 TTTTCAACC-T
40821 CTTTTCAACCTT
1 -TTTTCAACC-T
40833 TTTTCAACCT
1 TTTTCAACCT
40843 TTTTCAACC-
1 TTTTCAACCT
40852 TTTTCAAACCT
1 TTTTC-AACCT
40863 TATTTC
1 T-TTTC
40869 CTATTCGATC
Statistics
Matches: 44, Mismatches: 0, Indels: 6
0.88 0.00 0.12
Matches are distributed among these distances:
9 5 0.11
10 14 0.32
11 10 0.23
12 15 0.34
ACGTcount: A:0.20, C:0.29, G:0.00, T:0.51
Consensus pattern (10 bp):
TTTTCAACCT
Left flanking sequence: Indices 40310 -- 40809
GCTACCCCTATTCCGTCTGGTGGGTACGCCTTGGTCTCTATACACAACCTTTGTTAATGTCGTGG
TGGGGACGGTAGAGGGGAAACTACGGCGGTTGGGTGGTAGTAACGTAGTGGGAGGGCATGTGACC
GCTGGAAACGCTAGTGACAGCTGGAGGGACCGCAGGCGGCGCCCCTCCAGACCTCCCCACCGCTT
AGTTGGTGGGCTACGGTGGATGCTTGGAGCAGTTGCTCATAACAGGTGAGAGTTGTCAGGGTGGA
TGGAGATTACCAGTGATGAGCTTAGTGGCCCCACTGAAGCGACTTCCGTGGTATACCCGTGGGAT
TAGCTTCTATTGTTAGACGTTCTATGGTGGCACGACGTATCCATGGTGGCTTGAACAATACTGCC
AACTTGACGCTTCAACTTAACTACAAATTACGAGCAAAAATGATGACAGTGTGGTAGCCTCGTAA
TACACGCAGCACTGCGTACTCTTTTAGCCGACTCTTGCTTGTGAC
Right flanking sequence: Indices 40869 -- 41368
CTATTCGATCGGTTAGTCGTCAATCTGCAAAATAGACTCGCTAGATCCCATCAACCGAGCCAATC
TGTCTACACAACCGGGCACAACCGGGCTACCGTCAAGTCGTGGAATGCTTGGCCCTGCACTACAT
GTGGATTATTGCCAGCGACTAATCTGGATACATGACAGGCAGTTGCCTAAAGGGGACTGCAAAGG
ACCACTACAACTGAAACACTACAACTATATATAGAGACGCACCAAGCCATAAGAAAAGCGTGATA
AAGCATCACACGACGCTCTTCTTTAACTCTACCCCACCACGATCGAATTCTAGTGGTTAATTTTT
ACGACTATGACTATGGTTCCACCAAATTGCTGGTTCCACCAAACAACCTTCGCTCCTTTTCTTGT
CCTTCTCCACAACCACCCCTGTCATCTGTCCTTCTTATTTTCTTCATTTCCTCTTCTATTCTTCT
TCCATTCTTTTTCCTTTCTTCCATCTTCCTTCTCCCCTACTTCCT
Found at i:41426 original size:15 final size:15
Alignment explanation
Indices: 41406--41441 Score: 65
Period size: 15 Copynumber: 2.5 Consensus size: 15
41396 AAACCCATCT
41406 CCACCACTACCACCA
1 CCACCACTACCACCA
41421 CCACCACTACCACCA
1 CCACCACTACCACCA
41436 CC-CCAC
1 CCACCAC
41442 CCACCCCATG
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 4 0.19
15 17 0.81
ACGTcount: A:0.31, C:0.64, G:0.00, T:0.06
Consensus pattern (15 bp):
CCACCACTACCACCA
Left flanking sequence: Indices 40906 -- 41405
TCGCTAGATCCCATCAACCGAGCCAATCTGTCTACACAACCGGGCACAACCGGGCTACCGTCAAG
TCGTGGAATGCTTGGCCCTGCACTACATGTGGATTATTGCCAGCGACTAATCTGGATACATGACA
GGCAGTTGCCTAAAGGGGACTGCAAAGGACCACTACAACTGAAACACTACAACTATATATAGAGA
CGCACCAAGCCATAAGAAAAGCGTGATAAAGCATCACACGACGCTCTTCTTTAACTCTACCCCAC
CACGATCGAATTCTAGTGGTTAATTTTTACGACTATGACTATGGTTCCACCAAATTGCTGGTTCC
ACCAAACAACCTTCGCTCCTTTTCTTGTCCTTCTCCACAACCACCCCTGTCATCTGTCCTTCTTA
TTTTCTTCATTTCCTCTTCTATTCTTCTTCCATTCTTTTTCCTTTCTTCCATCTTCCTTCTCCCC
TACTTCCTACACACAACCTATCTTCGCACGTCAGTAAACCCATCT
Right flanking sequence: Indices 41442 -- 41941
CCACCCCATGGACGACACCGTCAAACTCTTGCTCCGGTTCGTGGCCCGAGGGTTCTACCAGGTGC
CCCACGTGCTCATTCTCGATGCCGTGATGCTCCACCTGGTGCTCTCCGACGACGACTTGCTCCAC
CTCCTCGAGATCAAAAAGAAGGAGCTCCGGGCCTACTGCAACAAGCTCGTGGACGACAGACTCCT
CGCCACCCACGTGCAAAAGGAGGAGCACCCGCAGCAGCGGGCGATGTCGCGAACCTACTACTACA
TCCACATCACCGAGGCCATCGACGCCATCAAGTGGAAGATCCACTCGGTGGTCAACACCCTCAAG
AAAGAAATGCTGAACTACGGCAACCCGCTGGGGTACGTGTGCTCGCGGTGCCACCGCAAAGTGCT
GCAGTTGGACGCCATCTCCATGCTCAGTGCCGACCAGCTGGAGTTTTTGTGCGATGTGTGCAACG
GCGTGCTCGTGGAGGACGATCTGAGCCAGCAGGCGCAGATCAAGC
Found at i:41445 original size:12 final size:14
Alignment explanation
Indices: 41406--41446 Score: 50
Period size: 15 Copynumber: 2.9 Consensus size: 14
41396 AAACCCATCT
41406 CCACCACTACCACCA
1 CCACCAC-ACCACCA
41421 CCACCACTACCACCA
1 CCACCAC-ACCACCA
41436 CC-CCAC-CCACC
1 CCACCACACCACC
41447 CCATGGACGA
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
12 5 0.19
14 4 0.15
15 17 0.65
ACGTcount: A:0.29, C:0.66, G:0.00, T:0.05
Consensus pattern (14 bp):
CCACCACACCACCA
Left flanking sequence: Indices 40906 -- 41405
TCGCTAGATCCCATCAACCGAGCCAATCTGTCTACACAACCGGGCACAACCGGGCTACCGTCAAG
TCGTGGAATGCTTGGCCCTGCACTACATGTGGATTATTGCCAGCGACTAATCTGGATACATGACA
GGCAGTTGCCTAAAGGGGACTGCAAAGGACCACTACAACTGAAACACTACAACTATATATAGAGA
CGCACCAAGCCATAAGAAAAGCGTGATAAAGCATCACACGACGCTCTTCTTTAACTCTACCCCAC
CACGATCGAATTCTAGTGGTTAATTTTTACGACTATGACTATGGTTCCACCAAATTGCTGGTTCC
ACCAAACAACCTTCGCTCCTTTTCTTGTCCTTCTCCACAACCACCCCTGTCATCTGTCCTTCTTA
TTTTCTTCATTTCCTCTTCTATTCTTCTTCCATTCTTTTTCCTTTCTTCCATCTTCCTTCTCCCC
TACTTCCTACACACAACCTATCTTCGCACGTCAGTAAACCCATCT
Right flanking sequence: Indices 41447 -- 41946
CCATGGACGACACCGTCAAACTCTTGCTCCGGTTCGTGGCCCGAGGGTTCTACCAGGTGCCCCAC
GTGCTCATTCTCGATGCCGTGATGCTCCACCTGGTGCTCTCCGACGACGACTTGCTCCACCTCCT
CGAGATCAAAAAGAAGGAGCTCCGGGCCTACTGCAACAAGCTCGTGGACGACAGACTCCTCGCCA
CCCACGTGCAAAAGGAGGAGCACCCGCAGCAGCGGGCGATGTCGCGAACCTACTACTACATCCAC
ATCACCGAGGCCATCGACGCCATCAAGTGGAAGATCCACTCGGTGGTCAACACCCTCAAGAAAGA
AATGCTGAACTACGGCAACCCGCTGGGGTACGTGTGCTCGCGGTGCCACCGCAAAGTGCTGCAGT
TGGACGCCATCTCCATGCTCAGTGCCGACCAGCTGGAGTTTTTGTGCGATGTGTGCAACGGCGTG
CTCGTGGAGGACGATCTGAGCCAGCAGGCGCAGATCAAGCAGGAG
Found at i:42624 original size:36 final size:37
Alignment explanation
Indices: 42579--42687 Score: 159
Period size: 36 Copynumber: 3.0 Consensus size: 37
42569 TTAGCATTAA
42579 AGGTACTTTTGCAGCCAAAAGTAGGGAGAAATATGGG
1 AGGTACTTTTGCAGCCAAAAGTAGGGAGAAATATGGG
* *
42616 AGGT-CTTTTGCAGCCAAAA-AAGGGAGGAATATGGG
1 AGGTACTTTTGCAGCCAAAAGTAGGGAGAAATATGGG
* * *
42651 AGGTACCTTTGAAGCCAAAAGTAGGGAGAAATTTGGG
1 AGGTACTTTTGCAGCCAAAAGTAGGGAGAAATATGGG
42688 TGAGCTAAGC
Statistics
Matches: 63, Mismatches: 7, Indels: 4
0.85 0.09 0.05
Matches are distributed among these distances:
35 18 0.29
36 28 0.44
37 17 0.27
ACGTcount: A:0.35, C:0.11, G:0.33, T:0.21
Consensus pattern (37 bp):
AGGTACTTTTGCAGCCAAAAGTAGGGAGAAATATGGG
Left flanking sequence: Indices 42079 -- 42578
ACCGCCAGTTTGGGCCGTCCGCGCAAGCACGCGGCGTCGCAGATGGCCGCGGACGCTTCCCGGGC
CCAGGCCACGCTCCAGGTGTCGATCACCGCCAACGACAAGGACTTGGAGCGCGAGCAGGAAGAAA
AGGAGGAGCGCAGACTCAAGTTGGAGCAGAACGCGTTGCCGCTGTGGCACCTGGCGCTGACAGTG
GGCCAGGAGACGCTCGGCAAGTTCACGTCGGACGAGGAGGAGAAGAAGCCGTTTGGCGAGGACGT
GGAGGTCAAGGAGGAGGCCGTGCCCCAGCAGCTGACGTCGCAGATCAAGGACAAGGAGGCCCAGG
ACGCGTTGGCCGCGTACTATGCGCAGTTGGCGGAGCGTGAGCAGCAGGAGGCCGACGACGATGAC
GACGACGACGAGGACGAGTTTGACGATTTGTAGGGATTTGGATGATTACTGCCATATGGACTGGG
TCAGTTCCAGATAATAGGAACACATAAGTAATAAATTAGCATTAA
Right flanking sequence: Indices 42688 -- 43187
TGAGCTAAGCAAAGGTAATTGATATATAAACAGCTGACGATTCGACAGATCTCGGTCCCGTTGGA
TCAACTACGTGTGGCATTTAAATTCATTTTGTTAATGTCAGGTGACTCCTGGTCACGTGACGTAT
TCCAAACAAACAGAGGTTTCCACGGGCCCTGTTTTCCCGAAATTTTTTTCAGCTCGGCAGCAGCG
TCAGGATACTTCTTGGGTCGAGTTAGGCCGGTTTAAGCTGGTTCCACTTACCTAGCGTGACCCAT
TAGGCAACCACAAAGAAATGTATCTATATGCACTACCACCCCAACACCGAAGTGAAGACCGTTGC
CGCTGATGGAGAAAACCCGGGAAATCAACCTAAAACTCCTCAGACGGCTGGTGTCACGACGGTGG
TATCACGGGGTAGTCACAATGCAGTAAGGTTTTGCGCAATTGAGGCGTAGCGCTCAAGTCTTTGA
AAAAGGAAGACTTCACAAGTGAGAGGAGCCAGCGTAGGCCGGGTG
Found at i:47474 original size:11 final size:11
Alignment explanation
Indices: 47458--47496 Score: 69
Period size: 11 Copynumber: 3.5 Consensus size: 11
47448 TGTCAATCCG
47458 GTGTAAGCCCA
1 GTGTAAGCCCA
47469 GTGTAAGCCCA
1 GTGTAAGCCCA
*
47480 GTGTAAGCCAA
1 GTGTAAGCCCA
47491 GTGTAA
1 GTGTAA
47497 ACTGGTGTAC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
11 27 1.00
ACGTcount: A:0.31, C:0.21, G:0.28, T:0.21
Consensus pattern (11 bp):
GTGTAAGCCCA
Left flanking sequence: Indices 46958 -- 47457
CTACTTGTTGGACTCCGGGTCTACCCTTTGCATCATGAAGCCGGAGATTGTCGACGAGATTGCCA
AGTTGTACTCTGGTGCCACTGCTGCCGGTGGTACCTACTACGTCGACTGTAACCAGGACCCCTCC
AAGTATTTCGAGGTGGTGTTTGACGGAATTACCATCAAAGTGCCTATCTCCCAGTTCATTTTGGA
GCAAAACGGTAGATGCCGGGTGGGGGCGCTGAAGTTCTCTAAACTGAGCAAGTACGAGGTGTTGG
GGGCTACTTTCCTTCAGAACGTGTACGCGGTGTTTGACTGGGAAGAGAATACGATCTCGTTGGCT
CCGGCTCGGTTCACCGACGAGACGGACATTAGAGAGATTGAGGCTGTGGGTAAGTAGTGCCCTAC
AGTAGTGGAAATAAATAGTTGGGAAGAGACAACGTAACAGGGTGTTTGCAATGTGCGAGTGTACC
CATCAGTGTATCATTGGTGGGGCTGTTGCGTAGTTTGTCAATCCG
Right flanking sequence: Indices 47497 -- 47996
ACTGGTGTACGTGCTGGCTTTGATGAGCGTTTAGTTCGCGCTCTAGCAATCCATGTATTGGTCCA
CTTCAAGTCCACGCTGCATCTTTAGTTCTAACTCAGAGCTGGTATAGCTCTAAACCACCTCTAGC
TTTCACCCCAGTTTAAACCAAATCGAACTATCGACAGCTTCAATACCCATTCCCAATCCACACTA
GCTCTATTCCCAGCCTTTTATCCAACACCTTGTCTTCTCCCACTCTCTAACTACTCTTTCTGTTG
TATAATAAGCTGGCCTGTGGTACAACTGGGCTTTACTAACGCAAATAGCCTGTATTGACTCAGTA
ACACGCAAACAAGCGTGCTCCAAACCCGCCAGCTACATATCTGGTCTCCTCTAGGCGCCTCAGGT
GTTCTGGTCTCCTCTACCACCCGACATATTCCCACCCACTACTCCCCCACCCCCACTACACCTCT
CAGTCCGTTGTCCATTCCCTAGTCTAAATTAGCATTATCGGTGAT
Found at i:48858 original size:12 final size:12
Alignment explanation
Indices: 48841--48866 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
48831 GAGGACGTCT
48841 GGTGGTGGGGTG
1 GGTGGTGGGGTG
48853 GGTGGTGGGGTG
1 GGTGGTGGGGTG
48865 GG
1 GG
48867 CATGGTGGTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.00, C:0.00, G:0.77, T:0.23
Consensus pattern (12 bp):
GGTGGTGGGGTG
Left flanking sequence: Indices 48341 -- 48840
GCCCGGCCCGGGCCCCCTGTTTGGCCGCGTGCAGCGTGTGCAAGAGGTAGCACAACACAAACCCC
ACGAACTGGAAGGCCACCGCCACCAACACGTTCCACACGAGGTTGGCAATGTTGCCCACGGGCAA
GCCCTCGACAAACACCTCGTCGTCGTAGATGGGACTGATCACCGTCAGCTCCCAGTACTCGGGCA
GGGCGTCCGCAGCCGCCTCCTCGTAGGTGGGGGGGTGGAGCTCGCGGTGGCGGTCGTCCTCCAGC
TCGGGCTTGGCCAGGAGGTTACGGAACACGCCGTCGGTGCCCAGACCGATGAACCGTCCGGGCCG
GTTCAGCTGCATCCGGCCTGTGGCGAGGCCGTTGTGGAGGCGTTCGTAGGTGGTGCGGACCGGGA
CCCACTGGTGGAAGGCTCCGATGAGCCGGTCGCGGGTGGTGGGTGGTGGGGGAACGTCGTGCGAC
GAGCCCTCTGCTGTGGGTGAGTCTTCGCGGGTGAAGAGGACGTCT
Right flanking sequence: Indices 48867 -- 49366
CATGGTGGTGGTTACGAGAAATGCGTGCGAAGGCTTGGCGTGGGACGAAGCACCGGTGGCTGGGA
CGACCGGGGCGGGTGTGGGGCTGAGGGTGGTGTGGTGGGGGTAGGGTGGTGGCTGGGGAGTGGTT
GGTCTGGGTTTTAGTGGGTTACCTGGGTTACCTGGTGGTTTCGGGGACCGTCCGGATGTGGTTAC
CGTGGCCCGTGCGAAGGGCGTGCTGGTGGTGGGAAGGGAAGGGGGTAAAATCAGGTTGGTGGGAC
AGGTCGGGTGGGGTGTGAGAGACGGTTAGTGGACGTTTTAGCCCTTGTTTTGGGCTTTTGGTGGT
GTGGAGCCACCGTGGCCTGGTGGCGGTGGTGATATACTGCATGTAGACGGTGTGGGCGGTTGCAA
CAGGAAAGCGTGTTTTACGGGATGGGAAGTGTTAATAAGGGGGTGGGGTGGCTATCCAGGGGTGA
TGAGCGCATTTCTAGCTGTTTTCCACACGGTTGGTGGTGGTTCAA
Found at i:49787 original size:18 final size:18
Alignment explanation
Indices: 49764--49876 Score: 99
Period size: 18 Copynumber: 6.4 Consensus size: 18
49754 GTCCCAGCCG
49764 TCACGCTTGCCCTGGTAC
1 TCACGCTTGCCCTGGTAC
49782 TCACGCTT---CTGGTA-
1 TCACGCTTGCCCTGGTAC
* *
49796 TCCACGGTCGCCCTGGTAC
1 T-CACGCTTGCCCTGGTAC
* **
49815 TCCCGCTTGCCCTGAAAC
1 TCACGCTTGCCCTGGTAC
*
49833 TCCCGCTTGCCCTGGTAC
1 TCACGCTTGCCCTGGTAC
* * *
49851 TCCCGCTTCCCCTCGTAC
1 TCACGCTTGCCCTGGTAC
*
49869 TCGCGCTT
1 TCACGCTT
49877 CTGGTAGCCC
Statistics
Matches: 78, Mismatches: 12, Indels: 10
0.78 0.12 0.10
Matches are distributed among these distances:
14 1 0.01
15 11 0.14
18 65 0.83
19 1 0.01
ACGTcount: A:0.10, C:0.42, G:0.20, T:0.27
Consensus pattern (18 bp):
TCACGCTTGCCCTGGTAC
Left flanking sequence: Indices 49264 -- 49763
GCGTGTTTTACGGGATGGGAAGTGTTAATAAGGGGGTGGGGTGGCTATCCAGGGGTGATGAGCGC
ATTTCTAGCTGTTTTCCACACGGTTGGTGGTGGTTCAATACCGGCCCAAAGTGGTGACCTTGGTG
TACTGCATACAGGTAGTAACCGATAAGCCGGCTAGTTGCAAATGGAAAGCCCCAGAGAGAGGCGT
TAAGGCCAGGCTAGGCGTTTTGTAGGTGTTGGTGACTGCACCAAAATTCACCCGCATGTTTCCAG
CTCTTCAAACGGGCGTGAAACACACAAAACACACCCAGATAACCAAAACAAGCAAATTCCTATAC
TGGCCTCCGGCCTCCTCCTGAGCTTACATACCCGCCTACATATCCAAACAGTTGCCTACCACCCC
CCACTTCCCATTCCTATCCAATGTCCCATTAAACCTAGTCTATCATGAGTCTATGTCAGTCTATA
TACAGCTATTTACAAGATCTCTAGTACCCGTCACGGTCCCAGCCG
Right flanking sequence: Indices 49877 -- 50376
CTGGTAGCCCCGGGTGTCTCTCATCGCGTTCCACCGGTTCGAGTTGCCCATCCCCTTGTTCTCGA
ACCGCTCGGGCCGCCGGCTGGAGCCACGGTACCCGTCGAACGTCGTGCGCTTCTGCTTCTTGCTG
GTGTTGTTGCGGTCCATCCCGATCTCCCGCCCACTAATGAGGAAATAATTGACGGCCTCATCGCG
GGGAAGCCCAATGTACAGGTAGTACACGTTGGAGCTCACCAGCAACCGGCGCTCGGGGTCGCCCA
CCACCGCGCGGTAGAACTCCATCGCCTCCACCACCAGCTTGCGGTGGTTCAACTTGTGCTTGGTC
GACATCTGCTTCTGGTACGACAAAAACGGGCTGAAAAACTCGTTGGTTTCGGTCTCGGGCGGGGC
AATTTGCAGCCACAAGTTGTCGGGCTTGGCAAACACATCCGAAGTCATTTCGTCGCTAAACTCGA
TGCCCCGGTCCATAAAGAGAGCCCGGCGGTACTTGAGCTCGCCCT
Found at i:51669 original size:2 final size:2
Alignment explanation
Indices: 51647--51685 Score: 53
Period size: 2 Copynumber: 20.0 Consensus size: 2
51637 TGGTTACGTG
* *
51647 GT GT GG GT GT AT GT GT G- GT GT GT GT GT GT GT GT GT GT GT
1 GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT
51686 ATGGTTTTGG
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
1 1 0.03
2 31 0.97
ACGTcount: A:0.03, C:0.00, G:0.51, T:0.46
Consensus pattern (2 bp):
GT
Left flanking sequence: Indices 51147 -- 51646
CCGCCCATGATCAACGCGGTGCGCACCCGGGCCAGCGGCGGCAACTTGGAGATGATCTTGTGGTA
CTCGTCGTCGATCTGGAGGGCCAAGTCACGGGTGGGGGCCACCACGAGGGTGGAAACCGACCCAC
GCACCCGGTTGTCAAGGATGGCCTGGAGGGTGGGCAACACAAACGCGAGGGTCTTGCCCGTACCG
GTCTTGGCCCGCACCACCAACCCGTTCTCGGTCAACGCAGGGCCCACGGTCTTCTCCTGGACGGG
GGTGAGCGTGGTAAATTTCAGCTTCTCCATACTCTTTTTCAAGAGAGGGGAGATGGGTAGGTCAG
CCACGGCGATGAGTCGCCTCACCAGCGTGGAAAACCGTCGGAGAAACATAGTGGAGATGGTGCAG
ATGAGATGAAAAATGAGATGAGACGGGATGAGACGGTGGAGATGAAAAAATAAAAGGAGTGAAGG
AAAAGGGGAAAGGGGAAAGGAGGGAAAGGAGAAAATGGTTACGTG
Right flanking sequence: Indices 51686 -- 52185
ATGGTTTTGGTGGGTTGGGTTAAAACGGGCTTACCGGTGTATTCTAACGGTGGTCTGTTTTGAAG
GTGCGAGGGAATAGATACAGGTGAGACATGTCACATTGGTGTCTCGAACAGACGCGCTGGTACCG
TTTGACGTGTAGAAGAAACGTTTAGAAGAAACTGTAGAAGAAACTGTAGAAGAAACACTCTGAAG
CGGTGGCAAAATCACCAATCAGTCAATGGTCACCTGATGCAGAAGGAAGTACCTGGAGGTGACTT
TAATGTTAGTTACCAGTGAGTCCAGTGACTGAGAGGATATGTTCTAGAGCATCAGAAGCGACATC
GAATCATCCGATCTGTCTGAATGCAAATTGTCTAGCTCTATGATAGAGACAACTGGTTCACCGTT
AATTTCGCTTCCAGAACTTTCCGTTCCCAATAGGCGTATTACATTCTTTACCGCTCCCTTACTCT
CCACATTCCCTTCCTCTCCCCGTTCCTTTGCTTTCTCCCTTCCTT
Found at i:51855 original size:12 final size:12
Alignment explanation
Indices: 51823--51871 Score: 80
Period size: 12 Copynumber: 4.0 Consensus size: 12
51813 CCGTTTGACG
51823 TGTAGAAGAAAC
1 TGTAGAAGAAAC
*
51835 GTTTAGAAGAAAC
1 -TGTAGAAGAAAC
51848 TGTAGAAGAAAC
1 TGTAGAAGAAAC
51860 TGTAGAAGAAAC
1 TGTAGAAGAAAC
51872 ACTCTGAAGC
Statistics
Matches: 34, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
12 23 0.68
13 11 0.32
ACGTcount: A:0.49, C:0.08, G:0.24, T:0.18
Consensus pattern (12 bp):
TGTAGAAGAAAC
Left flanking sequence: Indices 51323 -- 51822
GAGGGTCTTGCCCGTACCGGTCTTGGCCCGCACCACCAACCCGTTCTCGGTCAACGCAGGGCCCA
CGGTCTTCTCCTGGACGGGGGTGAGCGTGGTAAATTTCAGCTTCTCCATACTCTTTTTCAAGAGA
GGGGAGATGGGTAGGTCAGCCACGGCGATGAGTCGCCTCACCAGCGTGGAAAACCGTCGGAGAAA
CATAGTGGAGATGGTGCAGATGAGATGAAAAATGAGATGAGACGGGATGAGACGGTGGAGATGAA
AAAATAAAAGGAGTGAAGGAAAAGGGGAAAGGGGAAAGGAGGGAAAGGAGAAAATGGTTACGTGG
TGTGGGTGTATGTGTGGTGTGTGTGTGTGTGTGTGTGTATGGTTTTGGTGGGTTGGGTTAAAACG
GGCTTACCGGTGTATTCTAACGGTGGTCTGTTTTGAAGGTGCGAGGGAATAGATACAGGTGAGAC
ATGTCACATTGGTGTCTCGAACAGACGCGCTGGTACCGTTTGACG
Right flanking sequence: Indices 51872 -- 52371
ACTCTGAAGCGGTGGCAAAATCACCAATCAGTCAATGGTCACCTGATGCAGAAGGAAGTACCTGG
AGGTGACTTTAATGTTAGTTACCAGTGAGTCCAGTGACTGAGAGGATATGTTCTAGAGCATCAGA
AGCGACATCGAATCATCCGATCTGTCTGAATGCAAATTGTCTAGCTCTATGATAGAGACAACTGG
TTCACCGTTAATTTCGCTTCCAGAACTTTCCGTTCCCAATAGGCGTATTACATTCTTTACCGCTC
CCTTACTCTCCACATTCCCTTCCTCTCCCCGTTCCTTTGCTTTCTCCCTTCCTTGCTTTCTCCCC
ATACTCTTACCCACCACTTATGCTTCCCGATCTGGACACATGCGTCGTCTATCGCCACCACACAG
ATAACCCCCTAATGCCCAAATTCTACGTAACCAAACCTACATCACACTGTATACACCCTTAAACA
CTCTTTGAACCCCTGCTTCTTCGTCTCTTCCCCACATCTTCCCCT
Found at i:51857 original size:25 final size:24
Alignment explanation
Indices: 51823--51871 Score: 80
Period size: 25 Copynumber: 2.0 Consensus size: 24
51813 CCGTTTGACG
*
51823 TGTAGAAGAAACGTTTAGAAGAAAC
1 TGTAGAAGAAAC-TGTAGAAGAAAC
51848 TGTAGAAGAAACTGTAGAAGAAAC
1 TGTAGAAGAAACTGTAGAAGAAAC
51872 ACTCTGAAGC
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
24 11 0.48
25 12 0.52
ACGTcount: A:0.49, C:0.08, G:0.24, T:0.18
Consensus pattern (24 bp):
TGTAGAAGAAACTGTAGAAGAAAC
Left flanking sequence: Indices 51323 -- 51822
GAGGGTCTTGCCCGTACCGGTCTTGGCCCGCACCACCAACCCGTTCTCGGTCAACGCAGGGCCCA
CGGTCTTCTCCTGGACGGGGGTGAGCGTGGTAAATTTCAGCTTCTCCATACTCTTTTTCAAGAGA
GGGGAGATGGGTAGGTCAGCCACGGCGATGAGTCGCCTCACCAGCGTGGAAAACCGTCGGAGAAA
CATAGTGGAGATGGTGCAGATGAGATGAAAAATGAGATGAGACGGGATGAGACGGTGGAGATGAA
AAAATAAAAGGAGTGAAGGAAAAGGGGAAAGGGGAAAGGAGGGAAAGGAGAAAATGGTTACGTGG
TGTGGGTGTATGTGTGGTGTGTGTGTGTGTGTGTGTGTATGGTTTTGGTGGGTTGGGTTAAAACG
GGCTTACCGGTGTATTCTAACGGTGGTCTGTTTTGAAGGTGCGAGGGAATAGATACAGGTGAGAC
ATGTCACATTGGTGTCTCGAACAGACGCGCTGGTACCGTTTGACG
Right flanking sequence: Indices 51872 -- 52371
ACTCTGAAGCGGTGGCAAAATCACCAATCAGTCAATGGTCACCTGATGCAGAAGGAAGTACCTGG
AGGTGACTTTAATGTTAGTTACCAGTGAGTCCAGTGACTGAGAGGATATGTTCTAGAGCATCAGA
AGCGACATCGAATCATCCGATCTGTCTGAATGCAAATTGTCTAGCTCTATGATAGAGACAACTGG
TTCACCGTTAATTTCGCTTCCAGAACTTTCCGTTCCCAATAGGCGTATTACATTCTTTACCGCTC
CCTTACTCTCCACATTCCCTTCCTCTCCCCGTTCCTTTGCTTTCTCCCTTCCTTGCTTTCTCCCC
ATACTCTTACCCACCACTTATGCTTCCCGATCTGGACACATGCGTCGTCTATCGCCACCACACAG
ATAACCCCCTAATGCCCAAATTCTACGTAACCAAACCTACATCACACTGTATACACCCTTAAACA
CTCTTTGAACCCCTGCTTCTTCGTCTCTTCCCCACATCTTCCCCT
Found at i:52187 original size:16 final size:17
Alignment explanation
Indices: 52163--52195 Score: 59
Period size: 16 Copynumber: 2.0 Consensus size: 17
52153 CCTCTCCCCG
52163 TTCCTTTGCTTTCTCCC
1 TTCCTTTGCTTTCTCCC
52180 TTCC-TTGCTTTCTCCC
1 TTCCTTTGCTTTCTCCC
52196 CATACTCTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 12 0.75
17 4 0.25
ACGTcount: A:0.00, C:0.42, G:0.06, T:0.52
Consensus pattern (17 bp):
TTCCTTTGCTTTCTCCC
Left flanking sequence: Indices 51663 -- 52162
GGTGTGTGTGTGTGTGTGTGTGTATGGTTTTGGTGGGTTGGGTTAAAACGGGCTTACCGGTGTAT
TCTAACGGTGGTCTGTTTTGAAGGTGCGAGGGAATAGATACAGGTGAGACATGTCACATTGGTGT
CTCGAACAGACGCGCTGGTACCGTTTGACGTGTAGAAGAAACGTTTAGAAGAAACTGTAGAAGAA
ACTGTAGAAGAAACACTCTGAAGCGGTGGCAAAATCACCAATCAGTCAATGGTCACCTGATGCAG
AAGGAAGTACCTGGAGGTGACTTTAATGTTAGTTACCAGTGAGTCCAGTGACTGAGAGGATATGT
TCTAGAGCATCAGAAGCGACATCGAATCATCCGATCTGTCTGAATGCAAATTGTCTAGCTCTATG
ATAGAGACAACTGGTTCACCGTTAATTTCGCTTCCAGAACTTTCCGTTCCCAATAGGCGTATTAC
ATTCTTTACCGCTCCCTTACTCTCCACATTCCCTTCCTCTCCCCG
Right flanking sequence: Indices 52196 -- 52695
CATACTCTTACCCACCACTTATGCTTCCCGATCTGGACACATGCGTCGTCTATCGCCACCACACA
GATAACCCCCTAATGCCCAAATTCTACGTAACCAAACCTACATCACACTGTATACACCCTTAAAC
ACTCTTTGAACCCCTGCTTCTTCGTCTCTTCCCCACATCTTCCCCTCCTGTGCGGCTGTTGCCTA
TTTTAGCAACAGTGCGATCGTCAACCACACCCCACCTTCCGACCTTCCCACCCACCCCACCATGA
ACGAGGCCAACAACTCGACCCTGGGGTTCTTCTCCCGCATGCGGGACAACTACCACGCCAAGTTC
TCCAACCTAAATATCTCCCACCCGCCGGAAAAGGACGGAGCCACCGACGACGACACCCTCATCCA
CAACGCCTTCGTCAAGTACTTTGACACCTTGCAACAGCCGTACCCGGAGTGGCTCGGGGTCAAGC
AGGACGGCGTCGCCCCTGCTCGCGACCAGCACGTGTACTCGCAGT
Found at i:53867 original size:10 final size:10
Alignment explanation
Indices: 53852--53877 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
53842 TTCGGTTATC
53852 GAAACCTCTT
1 GAAACCTCTT
53862 GAAACCTCTT
1 GAAACCTCTT
53872 GAAACC
1 GAAACC
53878 AATTTCTTTG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.35, C:0.31, G:0.12, T:0.23
Consensus pattern (10 bp):
GAAACCTCTT
Left flanking sequence: Indices 53352 -- 53851
GACAATGTTGTCGGTAGCGACAACGGTGGCAGTGAGAGCAGCGAGAATGGAAATGAACTTCATGG
TGGTAATGAGGACAGAGAGGACGACGGGGGGTTATATAGGAGAAGTGCGGAGTGCCGTTGCAATC
CGAAAGGGGTCATTTTGGCTGGTGGTGGCTCCGGTGGTGGCTCTTTGGATTCTCAATCAGGTAGA
TTTGGTGTTCTACATGGTCCTTTGGCGTCCCAATTAGGCAATTCGATCTGATTTGCAACTACGCA
GCGAGAAGGAAAGAGGATTATTGGTGGGAATGTGGGGTATCGGGTAGAGGTTTTAGGTGGGTTAT
GGTTTTGAGAAACCTAAGCTTCGGCTTTTTAGTCTCCAGATTATATCAAATTTGCAAAATTCATG
CTACTTCGGTCAATACTCACTTGAGTTTGAGTCATGCTTTGCATGAATATAACTATAGATACACC
TAATAACCTTGGCGATAGACTCGTTAGCTTCGAATTTCGGTTATC
Right flanking sequence: Indices 53878 -- 54377
AATTTCTTTGGCACTAAACCTCAACGCCAGCTCCTTCTTATAATCTGTGGACTTGCCACACTGTC
TATTATCTTAACCTAAATCGAGGTTCCTCACGATAGAATTGAAAGATTGACGGATTCGAACTCGA
CCCTTAGCGGTACTTCTCAACGGTCGTTCTCAGTCAGCCCAAGAACCAGACCTTGCTCAGTAGTA
ACCACCTTCGTAGTAGCCCCATACCTCACATACGTAGTAACCCAGACCTCACCCACACCCCTTCA
CCTCTCGAGGTACGACTCCCGGGTCGCGTGCTTCACATAGTGCTCCCAGTAGTTCCGGCCCCGGA
TAAACCACTCCGGAAGCTTCCACTCGGGCGGCAACCGGAGCTGGATCACCAGCACGTGGTCAAAC
CGCGACTTGGCCAGGTTCTTGTAGTAGTTGTACTCGATGGCGTGGGGCATTGAGCTGAACGAGAG
CCCCCGGTGCTTGGGCACCGACCCCGCCAGACGGAACCGGTTGGC
Found at i:55392 original size:19 final size:20
Alignment explanation
Indices: 55351--55398 Score: 62
Period size: 19 Copynumber: 2.5 Consensus size: 20
55341 TGGTACAGAA
*
55351 ATGGTGAGAGTGAGGGGGCG
1 ATGGGGAGAGTGAGGGGGCG
* *
55371 ATGGGGAGAGT-AGGGTGTG
1 ATGGGGAGAGTGAGGGGGCG
55390 ATGGGGAGA
1 ATGGGGAGA
55399 AAAAGGTGTG
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
19 15 0.60
20 10 0.40
ACGTcount: A:0.23, C:0.02, G:0.58, T:0.17
Consensus pattern (20 bp):
ATGGGGAGAGTGAGGGGGCG
Left flanking sequence: Indices 54851 -- 55350
TCACAATGAGGTTTTTCTCGAGAAGCATCCACTGCTCGTTCTTCAGACGGGTGGGCACCGTGAGT
TTGTCGCCTTTCTTGCCTGTGTGTTGGTGGTTCAGCACCTTCATCTCCCCGATGTTGAACAACTC
GACATCGTTGGTTTCGAGGAAGGAGATCACGGTGCGTGGGGGCTTCTCCGCGTCTAGAAGCACAA
GCAGCTTGAGGTTGAGGGTCTCGAGAAACGGGAAATTGTCGCCATCGATCTTGGTACACCGGTAC
ACCCCGGGTTCGACGAGGCCAAAGTTGTCTGGTGGGACCAACATGGTGGAAAAGTGCGAATGCGG
ATGGTAGATAAGGTGAGAAGGGGAAGTGGGAAAGAGTGGGAAAGGAGCGTGAGAAAGGGAAAAAG
GAGTGGATTGAAGATGTAGAGTGGTGGGGGAGGTAATTGGTGTGTGGGTGAAAGTGGTGGTGGAT
GGTGGTGGATTTGTGGTGGGGTGTGACTGTGGTGGTGGTACAGAA
Right flanking sequence: Indices 55399 -- 55898
AAAAGGTGTGATGAGGTGGTAAGGGACAACTAGTTGGTACGTGACCATAGTTGTTACGTTTAATT
TCAACCTAAACGAACCACGATTGGCGTTGAAGGGGTGATACAACCAAGATGCAATTTTGACTGTT
TATTATGGTGGATCACCAGAATGGTTGTTGTATAACCACACGGGCAGAAACATAGCATGAAATCC
AATTTGCTACGGTTCAATTGTCGTTTTTAATCATACTTCATATTTGGTCCCTACCCTATTCCACC
GTTTATATGCAGGAACCAAGATCACAAGAACAAGGCCCCAACGTAACCGCCAACCAGACGACTAG
TCAGCCCAAAATCATTTTACACGTGCTTCTAAGCATTATCTGAAACAAACAAGCTCTCCAGCTAA
TCCCTCAGTTAGCACTGATTCCCCATATTCTTCCTTTGTCTATTCTATGCATTACCCAAACAACC
GGATGGAGTCGTCCGTCACCTTGACCTCGTCGTCGGCCACCTCCT
Found at i:55406 original size:19 final size:19
Alignment explanation
Indices: 55370--55411 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
55360 GTGAGGGGGC
** *
55370 GATGGGGAGAGTAGGGTGT
1 GATGGGGAGAAAAAGGTGT
55389 GATGGGGAGAAAAAGGTGT
1 GATGGGGAGAAAAAGGTGT
55408 GATG
1 GATG
55412 AGGTGGTAAG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.29, C:0.00, G:0.52, T:0.19
Consensus pattern (19 bp):
GATGGGGAGAAAAAGGTGT
Left flanking sequence: Indices 54870 -- 55369
GAGAAGCATCCACTGCTCGTTCTTCAGACGGGTGGGCACCGTGAGTTTGTCGCCTTTCTTGCCTG
TGTGTTGGTGGTTCAGCACCTTCATCTCCCCGATGTTGAACAACTCGACATCGTTGGTTTCGAGG
AAGGAGATCACGGTGCGTGGGGGCTTCTCCGCGTCTAGAAGCACAAGCAGCTTGAGGTTGAGGGT
CTCGAGAAACGGGAAATTGTCGCCATCGATCTTGGTACACCGGTACACCCCGGGTTCGACGAGGC
CAAAGTTGTCTGGTGGGACCAACATGGTGGAAAAGTGCGAATGCGGATGGTAGATAAGGTGAGAA
GGGGAAGTGGGAAAGAGTGGGAAAGGAGCGTGAGAAAGGGAAAAAGGAGTGGATTGAAGATGTAG
AGTGGTGGGGGAGGTAATTGGTGTGTGGGTGAAAGTGGTGGTGGATGGTGGTGGATTTGTGGTGG
GGTGTGACTGTGGTGGTGGTACAGAAATGGTGAGAGTGAGGGGGC
Right flanking sequence: Indices 55412 -- 55911
AGGTGGTAAGGGACAACTAGTTGGTACGTGACCATAGTTGTTACGTTTAATTTCAACCTAAACGA
ACCACGATTGGCGTTGAAGGGGTGATACAACCAAGATGCAATTTTGACTGTTTATTATGGTGGAT
CACCAGAATGGTTGTTGTATAACCACACGGGCAGAAACATAGCATGAAATCCAATTTGCTACGGT
TCAATTGTCGTTTTTAATCATACTTCATATTTGGTCCCTACCCTATTCCACCGTTTATATGCAGG
AACCAAGATCACAAGAACAAGGCCCCAACGTAACCGCCAACCAGACGACTAGTCAGCCCAAAATC
ATTTTACACGTGCTTCTAAGCATTATCTGAAACAAACAAGCTCTCCAGCTAATCCCTCAGTTAGC
ACTGATTCCCCATATTCTTCCTTTGTCTATTCTATGCATTACCCAAACAACCGGATGGAGTCGTC
CGTCACCTTGACCTCGTCGTCGGCCACCTCCTCCACCTCGTCCAT
Found at i:57031 original size:21 final size:21
Alignment explanation
Indices: 57005--57080 Score: 143
Period size: 21 Copynumber: 3.6 Consensus size: 21
56995 CTCGTCGTCG
57005 GGTGACTCCTCATTTTCCAGA
1 GGTGACTCCTCATTTTCCAGA
57026 GGTGACTCCTCATTTTCCAGA
1 GGTGACTCCTCATTTTCCAGA
*
57047 GGTGACTCCTCGTTTTCCAGA
1 GGTGACTCCTCATTTTCCAGA
57068 GGTGACTCCTCAT
1 GGTGACTCCTCAT
57081 CGCTGGACCC
Statistics
Matches: 53, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 53 1.00
ACGTcount: A:0.17, C:0.29, G:0.21, T:0.33
Consensus pattern (21 bp):
GGTGACTCCTCATTTTCCAGA
Left flanking sequence: Indices 56505 -- 57004
TGGTGGCGTTGTACTCGGCAAACAGCCGCTTTTTGGGGAGGGAAACCTCGTCGGAACCCCCCAAC
AACTGGCTGCGGAGGGCAAACACCGCGTCAAGGAGGTCGTAGCACTGCTCGCGAGCCTGGTCCAA
GTGCTTGGGCGTCTTCTTTGTGGTCACCAGCTCCGCGGCCGCCTGGTCGTAGGGCAACTGGTTGG
CCGTGGTAACGGCCTTTTGGAGTTTGAGTCTCGCGTCAAGTACCCGGTCGAAGAACTGGTGCTGC
TGCTGCACGGCAAACCCCTTGAGGGCGTCGGCAGTGGCGGTCTCCAGGAGCTTGTTGACCAAATG
GGTGCGTTCCTGGGCCATGAGGGCCGCCAACTGCTGGCGTTTGTACTCGAGGTCCTCGGGCTCGC
CGTCGGACGCGGCGTCGGCGTCGCTCTCCAGCTCGTCGTCGTCAGAATTGGCCCGCAATGACGCC
CCCGAGTCGGACCCGGCGGCGTCGTCGTCCATTGACTCGTCGTCG
Right flanking sequence: Indices 57081 -- 57580
CGCTGGACCCGGCACTGAACTCGTCTTGCAAGTCGCGCCGGCTCAGCTTGGCACCAGTGTACTTG
CCACCCAACGGGGCCACCGGCTGGCGGAGCTTCAGCTTGCCAACCTTGACGTAGTGGTCGTTGGC
CACCGTCTCCTCGTCCAGCTCCAGGTCAGACCCACGCTCGGCTTGGTCGTGGCGGTCCACATCCT
CAATGTCGAAGTCGTCGGGCTTCTCTAAAGTCGCCAACTCTTCCAAAAGCGATCTCTTCTTGGCC
ATAGTGCCGCTCATCTCATCGGGCGAGATATCTCGCATGGCACGTGAAGTATTGCACGTGCTATT
GCTCACATGACAATTTTTCCTAATCGGTGTCTCACCTAACGCTCACCTGACCGTTCGCACCTGAC
TGCTCAGCCTTAAACCTTAATTAGGGGGAAATCGCCGATTTAGATCAGCACAATGGCCAGTTTCA
CTTGGGAATGCAGCCGTTTGACGAGAAAATCAAATAAGGAAAAAT
Found at i:58867 original size:11 final size:11
Alignment explanation
Indices: 58835--58868 Score: 59
Period size: 11 Copynumber: 3.1 Consensus size: 11
58825 GGCGGTTTAG
*
58835 TGTGAAGTGTG
1 TGTGAAGTGTA
58846 TGTGAAGTGTA
1 TGTGAAGTGTA
58857 TGTGAAGTGTA
1 TGTGAAGTGTA
58868 T
1 T
58869 TTGTTGGTGT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.24, C:0.00, G:0.38, T:0.38
Consensus pattern (11 bp):
TGTGAAGTGTA
Left flanking sequence: Indices 58335 -- 58834
CTCGCTGGCTCCGGACAGCGAGTGGAAACGGTCCAAAGTGGATGCGGGGTACCCGACGATGGCCC
GAGTGAGGGGTTAAGGTTTAGCCGCGCCAGATGCAGTAAATGCAAAACATTAATTACTTTTGGCA
AAACCACGACCATTGCCATGCCGCTCGAAACCCCGGTTTGTTGTGATGGGGGCTTTGACGCGTGC
GGACGTACTCGCGGACCGCTGTCTTGGCACGGCGAGACAAGAAACTGCCGATAAGCGAACATGTC
TCCGCCAGATATTGCCATTTTTGACGACGGGGGTCGCTACGTCACAATGGGATTGGCGACCAGGG
AGACTTCACAACTGCGCCTCGTATCGGGGAGAAACAGTTGTTTTAGGCGTTTTAGGCTTCTTGCT
CGCATGGCGGTCGTCGCTTGCATGGTTGCTGTGCGGTCTAGATCAGAGACACTGCGGAGAGAAAA
GAGCAACGCAGCGAGGTGTAATAGGGGTGGATGAAGGCGGTTTAG
Right flanking sequence: Indices 58869 -- 59368
TTGTTGGTGTCACACGAGATCTGTGAAGACTTATGGTAGCTTGACAGTGTCGTGTCGTGGGGTGT
TGTTGGTAGGTGGATCTTGTTGAACTTTGTGTTGGGACTAGTGACTTGTGGGGTGGTGTAAGCAC
GAGTGGGAGTCTTTTCTCAACATGTCCACCTAGCCATCTCAGTTACAATTGGCCCGAGTTACAGG
CTCATAGCACCGAGTGCGTCACCTGCTCCACCTGCTCCACCGCTCCACCCAGACGATCGTACTCC
TTGCACCGTGTGGCGCTACTTTATTGTTATATACGATCCATCAGACACAGCAGTGTGTCGCACGA
CACAAACACGGTACGCGTTGGGCTGAAACACGAGAAAAGAAAGCGACACGAGCAGAGCGAAGCGT
AGCACCAAACTCGAGGCTCTGTGGAACCCGATGCTCGCACCCCTCGGTCAACGGGCCACTTCTCC
GATCATACGTGTCGCACGAGCATAACGCTCGGAGCCTACAAAACA
Found at i:59110 original size:8 final size:9
Alignment explanation
Indices: 59083--59112 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
59073 CCGAGTGCGT
59083 CACCTGCTC
1 CACCTGCTC
59092 CACCTGCTC
1 CACCTGCTC
59101 CACC-GCTC
1 CACCTGCTC
59109 CACC
1 CACC
59113 CAGACGATCG
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
8 8 0.38
9 13 0.62
ACGTcount: A:0.13, C:0.60, G:0.10, T:0.17
Consensus pattern (9 bp):
CACCTGCTC
Left flanking sequence: Indices 58583 -- 59082
AGCGAACATGTCTCCGCCAGATATTGCCATTTTTGACGACGGGGGTCGCTACGTCACAATGGGAT
TGGCGACCAGGGAGACTTCACAACTGCGCCTCGTATCGGGGAGAAACAGTTGTTTTAGGCGTTTT
AGGCTTCTTGCTCGCATGGCGGTCGTCGCTTGCATGGTTGCTGTGCGGTCTAGATCAGAGACACT
GCGGAGAGAAAAGAGCAACGCAGCGAGGTGTAATAGGGGTGGATGAAGGCGGTTTAGTGTGAAGT
GTGTGTGAAGTGTATGTGAAGTGTATTTGTTGGTGTCACACGAGATCTGTGAAGACTTATGGTAG
CTTGACAGTGTCGTGTCGTGGGGTGTTGTTGGTAGGTGGATCTTGTTGAACTTTGTGTTGGGACT
AGTGACTTGTGGGGTGGTGTAAGCACGAGTGGGAGTCTTTTCTCAACATGTCCACCTAGCCATCT
CAGTTACAATTGGCCCGAGTTACAGGCTCATAGCACCGAGTGCGT
Right flanking sequence: Indices 59113 -- 59612
CAGACGATCGTACTCCTTGCACCGTGTGGCGCTACTTTATTGTTATATACGATCCATCAGACACA
GCAGTGTGTCGCACGACACAAACACGGTACGCGTTGGGCTGAAACACGAGAAAAGAAAGCGACAC
GAGCAGAGCGAAGCGTAGCACCAAACTCGAGGCTCTGTGGAACCCGATGCTCGCACCCCTCGGTC
AACGGGCCACTTCTCCGATCATACGTGTCGCACGAGCATAACGCTCGGAGCCTACAAAACAAACC
ACCGAGCACCACCACCACCCAAACACACGACTAAACGGGCGGCTAGACCCGCTCCGCACCCTCTC
ACCACCCACTCACCACACCCACCACACCCCAGGCACCCCACCACCCCCGCCACCGCCCCCACAAT
TATCCGTCTGCTGCATTGATGTCACGTGGTCGCTCCCTCTTCAAGAAAATTTTCCGTAGAGACAG
CATCAAACCATGAGTGCCGACGAAGTGACCAAGCAGACCGAGCAA
Found at i:60906 original size:11 final size:11
Alignment explanation
Indices: 60892--60923 Score: 64
Period size: 11 Copynumber: 2.9 Consensus size: 11
60882 TCTAAGCTTA
60892 CCACGCAATTC
1 CCACGCAATTC
60903 CCACGCAATTC
1 CCACGCAATTC
60914 CCACGCAATT
1 CCACGCAATT
60924 ACGCTAATCT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.28, C:0.44, G:0.09, T:0.19
Consensus pattern (11 bp):
CCACGCAATTC
Left flanking sequence: Indices 60392 -- 60891
GATTAAAAAAGTTTGAGTAGGAAATGTTTGAGTAGGGTGGCAGGTGTCAATTTCGAAACAGAAGA
GGTATTGAGAAATACCGACACGAGTGATAAATGTGGCTTAGGTGTGGGGACCACGTTCGGGACCG
ACTCGACAGCGTGAGTCGCGAAAGACGTCCAAAGATCATCCATGTCGCGACAGCGTTGTGCGTGG
GTTATGACCCCGGAAGCCTCGGTGTCACCACGGCGTCACCACGATGTCACCTCGGTCCCACCGGT
CTCACCACTCCTCGGGCTCGAAAGACTGCGTTGTCGTACCGATCGCTTCCGACCAATGTCGAGCG
ATGTCGTGTCGCCCGAGAAGGGGTACCGGGTCACGGTTGAGCCGATCCGATTGTGACGAGTCAAA
GCCTGGGTACTGAGAAGACGGAGGTGACTGAACAGTGACACCAGTGACACCTACTGAGCACGGTT
GTTAGCCAACTCGCACTAGGCAATGCTAAGCGAACTCTAAGCTTA
Right flanking sequence: Indices 60924 -- 61423
ACGCTAATCTTAGTACTATAAGCCCAAAAGCACAGGCCAGTCGCCAAGAGACCGTTAATACGAAG
TTTCAGTCGTCATACTCACCGCGGAGCCACACTTCCTAACCAAGACTCCTACTTATAGACTCCCA
CGTCCGTATATATAGACTCCTTCTGCGTATATAGACCCCTACGACAGTGTCCACCTCCTACCACC
CCCTCCTACCATCCATCCATTATCTATAACTACTCGAGCGGCACGATCCGCTGCGGGTCGTACGG
CTTGTCCTCGTTCTCCTTGCGTTTCCAGCTCAACATCTGCTCCTTCTCAAAGTCGATCTCAAACA
CCCGCAACCGCCGGGCAAACTCCGCCGTCGTCGTCTTGGCCGAGTCGCCGGTCACGGCGTTGGAG
CACATCCACATCTTGTTGTCGGTCATGATGCACGCATCGTTCTCGTGCTCGTGGCCCACCAGCAC
CACCTGGTACCCGTTGTCGACGATGTCGTCGTAGAACTTGGGCAG
Found at i:63321 original size:8 final size:8
Alignment explanation
Indices: 63294--63398 Score: 183
Period size: 8 Copynumber: 12.8 Consensus size: 8
63284 AGGTAAAACA
63294 TGAGAAACG
1 TGAG-AACG
63303 TGAGAAACG
1 TGAG-AACG
63312 TGAGAACG
1 TGAGAACG
63320 TGAGAAACG
1 TGAG-AACG
63329 TGAGAACG
1 TGAGAACG
63337 TGAGAACG
1 TGAGAACG
63345 TGAGAACG
1 TGAGAACG
63353 TGAGAACG
1 TGAGAACG
63361 TGAGAACG
1 TGAGAACG
63369 TGAGAACG
1 TGAGAACG
63377 TGAGAACG
1 TGAGAACG
63385 TGAGAACG
1 TGAGAACG
63393 TGAGAA
1 TGAGAA
63399 TCGTTCGCGT
Statistics
Matches: 95, Mismatches: 0, Indels: 3
0.97 0.00 0.03
Matches are distributed among these distances:
8 74 0.78
9 21 0.22
ACGTcount: A:0.40, C:0.11, G:0.36, T:0.12
Consensus pattern (8 bp):
TGAGAACG
Left flanking sequence: Indices 62794 -- 63293
ACGTGCATGGTACATATGTCGCTCGGTTTCATGGCGGCAGTAGGCAGCACTCCCGACGCGTCGAA
AGGCTAGACCGGGCCCAGGGCGTGCAACCGGGAGCTGGCGATCTACGATAAATACCTACACACGG
TGGCGGGGACCACGCCCACGGGGAACAAAAACGGAGTTGTCAGGCAACACCGCCACAAATAGCCC
TTTGAGAGCACAATCCAGACCACTGCAGGGGTGCGTCTGATCCGTCGACGGTGCATGCTTGCGCA
CCGGATGTCCCGAACGAGTAGAAAATTACCTTTGCGAGTGGTGGGGCCCGTGAGGGTGGGGACGG
AGGCTGCGGACAGGAGACACGCGGTGTTCACGGGGCAGGCGATGGCGTGCGATGGAGGCTAAGCG
CGCTAAGCGGGCTATTTTGTGGTGGCGTAATGGGGTGATTCGGTCACGGGAAGGCCCGGAACCGA
GTCCCGTGGGGTGGTTCTACGAAACGAGAAAGGTGAGGTAAAACA
Right flanking sequence: Indices 63399 -- 63898
TCGTTCGCGTGAAACGTCGAGTAAAACGTCGAGTGAAACTCATCTAAAACGTCGCATTGAAACGG
TTTACTAGGCGTGCTAGGCGTACTTGGCGTATAGGCGTGGCGGTGTATAATGACAGGTCGCCGCC
TGGCTTGGCGATCGCGCCTTTGTTCGCGTATAATTAAAGTAAACGTTGAAGCAAACGTCGATACG
CGAGTCTAGACTCTACGTGCGGGCAAAATACGAACAACGCGTAGTTCTTAAGCGGGCCACCATGC
GAACAACGCGGTTCACACGCGTGTGGCCCTTGTGTAGCGTTGCCCTAAGCCCCCCCGGGCGGCTG
TGGCTGCGTTGCTGCGGCCTCGGCAGGAATACGAATGGGCTTATTGTCTATTTTCGGTTATATGT
GAGGTGAAATCGTAGGGCTGTACGGTCTAGACCAAGCTGTCAAACTCGGCCTTGGAGTGGGCACT
GGTCCACCGCAACTTGTGGGCGGGGTGCTGCTCGGGCACAAACTT
Found at i:63435 original size:24 final size:25
Alignment explanation
Indices: 63403--63462 Score: 65
Period size: 24 Copynumber: 2.5 Consensus size: 25
63393 TGAGAATCGT
*
63403 TCGC-GTGAAACGTCGA-GTAAAACG
1 TCGCAGTGAAACGTC-ATCTAAAACG
63427 TCG-AGTGAAAC-TCATCTAAAACG
1 TCGCAGTGAAACGTCATCTAAAACG
*
63450 TCGCATTGAAACG
1 TCGCAGTGAAACG
63463 GTTTACTAGG
Statistics
Matches: 30, Mismatches: 2, Indels: 7
0.77 0.05 0.18
Matches are distributed among these distances:
22 1 0.03
23 12 0.40
24 17 0.57
ACGTcount: A:0.35, C:0.22, G:0.23, T:0.20
Consensus pattern (25 bp):
TCGCAGTGAAACGTCATCTAAAACG
Left flanking sequence: Indices 62903 -- 63402
ACGATAAATACCTACACACGGTGGCGGGGACCACGCCCACGGGGAACAAAAACGGAGTTGTCAGG
CAACACCGCCACAAATAGCCCTTTGAGAGCACAATCCAGACCACTGCAGGGGTGCGTCTGATCCG
TCGACGGTGCATGCTTGCGCACCGGATGTCCCGAACGAGTAGAAAATTACCTTTGCGAGTGGTGG
GGCCCGTGAGGGTGGGGACGGAGGCTGCGGACAGGAGACACGCGGTGTTCACGGGGCAGGCGATG
GCGTGCGATGGAGGCTAAGCGCGCTAAGCGGGCTATTTTGTGGTGGCGTAATGGGGTGATTCGGT
CACGGGAAGGCCCGGAACCGAGTCCCGTGGGGTGGTTCTACGAAACGAGAAAGGTGAGGTAAAAC
ATGAGAAACGTGAGAAACGTGAGAACGTGAGAAACGTGAGAACGTGAGAACGTGAGAACGTGAGA
ACGTGAGAACGTGAGAACGTGAGAACGTGAGAACGTGAGAATCGT
Right flanking sequence: Indices 63463 -- 63962
GTTTACTAGGCGTGCTAGGCGTACTTGGCGTATAGGCGTGGCGGTGTATAATGACAGGTCGCCGC
CTGGCTTGGCGATCGCGCCTTTGTTCGCGTATAATTAAAGTAAACGTTGAAGCAAACGTCGATAC
GCGAGTCTAGACTCTACGTGCGGGCAAAATACGAACAACGCGTAGTTCTTAAGCGGGCCACCATG
CGAACAACGCGGTTCACACGCGTGTGGCCCTTGTGTAGCGTTGCCCTAAGCCCCCCCGGGCGGCT
GTGGCTGCGTTGCTGCGGCCTCGGCAGGAATACGAATGGGCTTATTGTCTATTTTCGGTTATATG
TGAGGTGAAATCGTAGGGCTGTACGGTCTAGACCAAGCTGTCAAACTCGGCCTTGGAGTGGGCAC
TGGTCCACCGCAACTTGTGGGCGGGGTGCTGCTCGGGCACAAACTTCTCGCCAAACAATTGCTCT
CGGTAGGTCTGCTGCTCGGCAGGGTACTCGGTCTGCACCAACCCC
Found at i:66740 original size:18 final size:20
Alignment explanation
Indices: 66703--66740 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
66693 GGTGCAGTGG
*
66703 TGTGCTGTGTGGTGCGAAAA
1 TGTGCTGTGGGGTGCGAAAA
66723 TGTGCTG-GGGGT-CGAAAA
1 TGTGCTGTGGGGTGCGAAAA
66741 GGTGGAGCCG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 6 0.35
19 4 0.24
20 7 0.41
ACGTcount: A:0.21, C:0.11, G:0.42, T:0.26
Consensus pattern (20 bp):
TGTGCTGTGGGGTGCGAAAA
Left flanking sequence: Indices 66203 -- 66702
GTCGGGCAGCGCCAGGGTGGCCGAGGGGTCCGACCACTCGTTGGTCAGCTGGAAGTAGTTGACGG
GCTCGTCGTCGTCGTCAAACATCGGTGCAGTGATGTCCTGCGGTGCTGCGGCAAACAGGCCCACC
TGGAGCACAAGTCGCACCATCTCGAGGGGCTGGGACACGGCCACCTTGGCGTAGTTTTGGGCAAA
GCTCGTGAGGAGGTTCTTGCCTAGCTCAATTAGGTTGTTCCCGTCAAAGTACTCGGAGAACTCGA
GGTCCGACACGTAGTTTTTGTCGGCCATCTGCTCTGGGGCGTGGATGCCCACGGTGCCCCGTCCG
ATCTGTTTGCCACTGTGTTTGAGGGTGCTCAGGAGCGCAGCCAGGAGCGGGCGACCGTTCTCCAC
GTTGACAAGGCCGACTCCGGGGCGGTACACCACGGGATTGCCCGTGTTGAACGTGTCACGGTCGA
CGTACGCGCGCACGTTGCTCGCGGTCATGGTTGCTGGTGCAGTGG
Right flanking sequence: Indices 66741 -- 67240
GGTGGAGCCGGCGAGATGGGACCGACGGGTGTGTGGGGTGGCAGTACGAGTGTGTTGAGGACGTC
TGGATGCTTTGGTTGAACGTGTGTATCAGATGGTATGTGAGTAGGTGGGTGGTGATGGTACAAAA
GCGGGGGTTTTACTTGTAAGGGGGTCTAGCTCGTGAGAAGACGCACCGGCTGGAGCTTCTGTCCA
CCGTTTTGATACTTCTGCCTATATTTGTGGTGCTCTACAGCCCAATCGAACCAGGCACCCCACAT
CCAGTACTCCCCATCACCTTCACCATTCCGTGTTATGTGCCCTGCCTATCGATATGGGCCAGGTC
AGCCACAGTAGCTCAACCCCTCGATCACCGGCCGCATAGGGCGTATTTTCCTACTTCCTTTAAAA
CCCCTCTTAAATCATACGTTGTAGGCGAGCCTGACTCGCGAACCGGTCAGCTGAGCTGTGACATC
ACAATCACGCCATCTTGGCCCACTTGCACCTCACTGATTGTTCAG
Found at i:67529 original size:11 final size:11
Alignment explanation
Indices: 67513--67556 Score: 52
Period size: 11 Copynumber: 4.0 Consensus size: 11
67503 CTACGTTAAT
*
67513 TGACCTTTCCA
1 TGACCTTCCCA
*
67524 TGACCTTCCCT
1 TGACCTTCCCA
**
67535 TGACCTTCCTT
1 TGACCTTCCCA
67546 TGACCTTCCCA
1 TGACCTTCCCA
67557 ACACCTCTCC
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
11 28 1.00
ACGTcount: A:0.14, C:0.41, G:0.09, T:0.36
Consensus pattern (11 bp):
TGACCTTCCCA
Left flanking sequence: Indices 67013 -- 67512
ATCACCTTCACCATTCCGTGTTATGTGCCCTGCCTATCGATATGGGCCAGGTCAGCCACAGTAGC
TCAACCCCTCGATCACCGGCCGCATAGGGCGTATTTTCCTACTTCCTTTAAAACCCCTCTTAAAT
CATACGTTGTAGGCGAGCCTGACTCGCGAACCGGTCAGCTGAGCTGTGACATCACAATCACGCCA
TCTTGGCCCACTTGCACCTCACTGATTGTTCAGGTCACGGTCAGTGCCACCGCATACCCGGTGGT
CCGGACACTACCACAGCACTCTTTGGAGTCTTTTTCTGTTACTATCCATTCTGAAACGGTGTACT
TTTGTCACCGCTCGTGACCAATCAATTTTCTTGGTACCCCTAGCTTGCCCCTCGTTAACGTTAGG
TTCCACAAAGGAAGCTCTCCCTCGAGAATACGATGCTGGCTCGTAAATTTAAGCACGGTACCGCA
ACCAACACCCACCAGGGTCTATTCCGGCCCGTAAACTACGTTAAT
Right flanking sequence: Indices 67557 -- 68056
ACACCTCTCCCTTATCTCTACCCCTGATGCGTCTACCCATTATCAGCAACTGACGCTCTTTGATA
ACCCACTCTGTCATCCAGGGACTGGTCCCGTCCGTGGTCACTCCTTTTGCTTTTGTATTCACTAC
ATGAGCTGCTCGTCAGCTTCCACCCGACAGAGAAGCCGGTGGCAGCGAGTGCACCCGACCAAGTA
GAAACCCCCCACCGACCGCTGGCTGCGGACGTGCCACAGCTGGTGGCACTGGCACTGTTTGCAAA
ACCCTGTGGACATGTATTAATTATTGTATTCTGACACTAGCCCCTGAACCGGTATCACCACCGGG
GATCGCGCACGGCGTTCCAGGGGCACTGGAGCCCACACAGCTTGCACTGGACGCGCTTGAACTCG
TTGATTACGTGGGTCTTCTTCGAGCACCCACAGTGTGAGCACACTATTTTCATCGCCTGGCGTTT
CAGCCGTTCCCGATGCTATTTATACGGGTGCGTATGTGTCCCCGT
Found at i:67540 original size:22 final size:22
Alignment explanation
Indices: 67512--67555 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
67502 ACTACGTTAA
67512 TTGACCTTTCC-ATGACCTTCCC
1 TTGACC-TTCCTATGACCTTCCC
*
67534 TTGACCTTCCTTTGACCTTCCC
1 TTGACCTTCCTATGACCTTCCC
67556 AACACCTCTC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 4 0.20
22 16 0.80
ACGTcount: A:0.11, C:0.41, G:0.09, T:0.39
Consensus pattern (22 bp):
TTGACCTTCCTATGACCTTCCC
Left flanking sequence: Indices 67012 -- 67511
CATCACCTTCACCATTCCGTGTTATGTGCCCTGCCTATCGATATGGGCCAGGTCAGCCACAGTAG
CTCAACCCCTCGATCACCGGCCGCATAGGGCGTATTTTCCTACTTCCTTTAAAACCCCTCTTAAA
TCATACGTTGTAGGCGAGCCTGACTCGCGAACCGGTCAGCTGAGCTGTGACATCACAATCACGCC
ATCTTGGCCCACTTGCACCTCACTGATTGTTCAGGTCACGGTCAGTGCCACCGCATACCCGGTGG
TCCGGACACTACCACAGCACTCTTTGGAGTCTTTTTCTGTTACTATCCATTCTGAAACGGTGTAC
TTTTGTCACCGCTCGTGACCAATCAATTTTCTTGGTACCCCTAGCTTGCCCCTCGTTAACGTTAG
GTTCCACAAAGGAAGCTCTCCCTCGAGAATACGATGCTGGCTCGTAAATTTAAGCACGGTACCGC
AACCAACACCCACCAGGGTCTATTCCGGCCCGTAAACTACGTTAA
Right flanking sequence: Indices 67556 -- 68055
AACACCTCTCCCTTATCTCTACCCCTGATGCGTCTACCCATTATCAGCAACTGACGCTCTTTGAT
AACCCACTCTGTCATCCAGGGACTGGTCCCGTCCGTGGTCACTCCTTTTGCTTTTGTATTCACTA
CATGAGCTGCTCGTCAGCTTCCACCCGACAGAGAAGCCGGTGGCAGCGAGTGCACCCGACCAAGT
AGAAACCCCCCACCGACCGCTGGCTGCGGACGTGCCACAGCTGGTGGCACTGGCACTGTTTGCAA
AACCCTGTGGACATGTATTAATTATTGTATTCTGACACTAGCCCCTGAACCGGTATCACCACCGG
GGATCGCGCACGGCGTTCCAGGGGCACTGGAGCCCACACAGCTTGCACTGGACGCGCTTGAACTC
GTTGATTACGTGGGTCTTCTTCGAGCACCCACAGTGTGAGCACACTATTTTCATCGCCTGGCGTT
TCAGCCGTTCCCGATGCTATTTATACGGGTGCGTATGTGTCCCCG
Found at i:68708 original size:13 final size:13
Alignment explanation
Indices: 68692--68727 Score: 63
Period size: 13 Copynumber: 2.8 Consensus size: 13
68682 GTCACCTTCA
68692 ATTGCCACCAGAC
1 ATTGCCACCAGAC
*
68705 ATTGCCACCCGAC
1 ATTGCCACCAGAC
68718 ATTGCCACCA
1 ATTGCCACCA
68728 AAATTTGTGC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.28, C:0.42, G:0.14, T:0.17
Consensus pattern (13 bp):
ATTGCCACCAGAC
Left flanking sequence: Indices 68192 -- 68691
TGTTGGGTCAAGTGCTGGTTGAGGTACTGGCGCACGGATGATCCGCCCACGGCCTCGTGCACGGG
CTCGCCTGCAGGCTTGTCGACCTTTGCGCGTTTCGCCACGGGCTCGTCCGGAGTCGCACCTACGT
TCGCTTCGGGGTCCATGGTGGTTGTTGGTACGCGAAAAATGAAACATTGATGGATGTTGAATGCG
ATAAGAACGAGTGATACGATATACGACAAGGTAGGTTAAAGTGTAATGGAGGTGCAGGAAGAAGA
GGGGTACAGTAGAGAAATAGAGTTAAGCTAAAGGTTGGACAGAATAATTGGGGTTTAGTAAGGCA
GTGACTGGCAGGAGCGCACTGGGTGTAGAGGAGTAGACAAAAAGTGACGTAATTCCCGTTGACAC
GATGGTTCGGTTGACGTGATAGCTCAATTGACACGGTAGTCCCGATTGACACCGTTAGTAAACAC
TGCCAAAGCGTGATGTAACATGCCTGGTGGAAACAGTCACCTTCA
Right flanking sequence: Indices 68728 -- 69227
AAATTTGTGCCACCACCAACAAATGCCACGTAACAACTGCCACCAACACGCACCATCTCACCCAA
CATTTCCCAGTAATCCTCAGCTCTCCAGGATACCTTTCACCACCCTTCACCACCTTCACCACCTT
CACCACCCTTCCCCACTTAGTTTTTTCGCGCGCTGTCACCACCCACCATGGACCCCTTCAACGAG
GTAGAGGAGGACGCGTGGGCGACGCTCAAGGCGATCGACGGGCTCATCGACCAGCGCCGCACCAC
CAGCATCGACCCCAGGGCGCTCGCGTCCGAGTTCAAAAACAACTGGCAAGAACTCGAGGAAATCT
ACACCGATTTGGAACAGGCCCTCGAGATCCTGGCCCAGACACCGGACCGGTTCCTGTTGACGGCT
GAGGATGTGGACAAGCGCCGCCAGATTCTCCGAGAGCTCTCTCTGCGCATGGCAGACACGAAAAA
GCGGTGGGAACAGGCCCACGCCCGGCCCCGTGACGTCACCACCAT
Found at i:68850 original size:9 final size:9
Alignment explanation
Indices: 68828--68864 Score: 65
Period size: 9 Copynumber: 4.0 Consensus size: 9
68818 CAGGATACCT
68828 TTCACCACCC
1 TTCACCA-CC
68838 TTCACCACC
1 TTCACCACC
68847 TTCACCACC
1 TTCACCACC
68856 TTCACCACC
1 TTCACCACC
68865 CTTCCCCACT
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
9 20 0.74
10 7 0.26
ACGTcount: A:0.22, C:0.57, G:0.00, T:0.22
Consensus pattern (9 bp):
TTCACCACC
Left flanking sequence: Indices 68328 -- 68827
CGGGGTCCATGGTGGTTGTTGGTACGCGAAAAATGAAACATTGATGGATGTTGAATGCGATAAGA
ACGAGTGATACGATATACGACAAGGTAGGTTAAAGTGTAATGGAGGTGCAGGAAGAAGAGGGGTA
CAGTAGAGAAATAGAGTTAAGCTAAAGGTTGGACAGAATAATTGGGGTTTAGTAAGGCAGTGACT
GGCAGGAGCGCACTGGGTGTAGAGGAGTAGACAAAAAGTGACGTAATTCCCGTTGACACGATGGT
TCGGTTGACGTGATAGCTCAATTGACACGGTAGTCCCGATTGACACCGTTAGTAAACACTGCCAA
AGCGTGATGTAACATGCCTGGTGGAAACAGTCACCTTCAATTGCCACCAGACATTGCCACCCGAC
ATTGCCACCAAAATTTGTGCCACCACCAACAAATGCCACGTAACAACTGCCACCAACACGCACCA
TCTCACCCAACATTTCCCAGTAATCCTCAGCTCTCCAGGATACCT
Right flanking sequence: Indices 68865 -- 69364
CTTCCCCACTTAGTTTTTTCGCGCGCTGTCACCACCCACCATGGACCCCTTCAACGAGGTAGAGG
AGGACGCGTGGGCGACGCTCAAGGCGATCGACGGGCTCATCGACCAGCGCCGCACCACCAGCATC
GACCCCAGGGCGCTCGCGTCCGAGTTCAAAAACAACTGGCAAGAACTCGAGGAAATCTACACCGA
TTTGGAACAGGCCCTCGAGATCCTGGCCCAGACACCGGACCGGTTCCTGTTGACGGCTGAGGATG
TGGACAAGCGCCGCCAGATTCTCCGAGAGCTCTCTCTGCGCATGGCAGACACGAAAAAGCGGTGG
GAACAGGCCCACGCCCGGCCCCGTGACGTCACCACCATGAGCAACCGCATCAGCCACGACGACGA
AAACCCGTTCAGCGACGCCAACCAGCCGGGCCAGAGCTGGCAGCAGCAGCAGATGATCGACGAGC
AGGACACCCAGCTCGATCTGATCCACCAAACCATGCGCAATCTCA
Found at i:69783 original size:18 final size:18
Alignment explanation
Indices: 69691--69774 Score: 150
Period size: 18 Copynumber: 4.7 Consensus size: 18
69681 CTAACTAGCT
*
69691 TACAGGAACCAACGTGTC
1 TACAGGTACCAACGTGTC
*
69709 TAAAGGTACCAACGTGTC
1 TACAGGTACCAACGTGTC
69727 TACAGGTACCAACGTGTC
1 TACAGGTACCAACGTGTC
69745 TACAGGTACCAACGTGTC
1 TACAGGTACCAACGTGTC
69763 TACAGGTACCAA
1 TACAGGTACCAA
69775 TGGGTCTACC
Statistics
Matches: 63, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 63 1.00
ACGTcount: A:0.32, C:0.26, G:0.21, T:0.20
Consensus pattern (18 bp):
TACAGGTACCAACGTGTC
Left flanking sequence: Indices 69191 -- 69690
AACAGGCCCACGCCCGGCCCCGTGACGTCACCACCATGAGCAACCGCATCAGCCACGACGACGAA
AACCCGTTCAGCGACGCCAACCAGCCGGGCCAGAGCTGGCAGCAGCAGCAGATGATCGACGAGCA
GGACACCCAGCTCGATCTGATCCACCAAACCATGCGCAATCTCAACCAGCAGGCCCAGCTTATGG
GGTCCGAGTTGGAGGACCAGGGGTTTATGTTGGACGACTTGGAGCGCGATTTGGACAACGTAGAC
CTGAAGCTACAGCGTGGGATGAAGCGGATTAACCATTTTATAGAGAAAAACCGCGAGCTGGCGCT
GTCGTGGTGCATTGCCATCTTGATTGTGGTGTTGGTGGTGTTGTTGGTGATGGTGCTCGTGGCAT
AGGAATGACAAGTAATGATAGAGTTTGTGTAGAGGTGCTTAGGGGGAGTTGTGGGGCGACCACAG
GCTACTGGTACTTATGTGCTGGTGGTAGCTAGGGTCTAACTAGCT
Right flanking sequence: Indices 69775 -- 70274
TGGGTCTACCTTGTGGTTCTAAACGCTCCAGAGGAGAACACCACGGGACATCTACTAGTTTGAGC
CCTTGAATTCTACGACCCTGGCACTTCAAAAAACCATCTGGCTCACTGACATCTTCACCACAACG
CCAAGCAAAACATCAGTAGCCAGCTTATGAATGGTCCATTGTCTTTTGATCGAACATCTGTAGCA
GTCTTGGCGGTCTGTTATTTATCAGCAGATTTGGATGTATAGGTGCTTGCCAGCTTAACCATCAA
TAAATATAGTTTCTTGGCATTGACTGTCAGCATCTAGTCCTGAGCAACCAACAATACCTGCTGTG
TTCGCTGCCAGGGACATCTTCCTTGGCTTCGAAACAATGGTCGCTGGCAGAAGAAGATCTTGCGT
TTGTGTCACGGTGCTTGAGGCTGACACCGAAGTTGCAAAACGATAACTCAGACAGTCAAAAGCGT
AGATAAAAATGAAACAGACTATCCGTTCCCATAAACCGCCTCCCC
Found at i:75467 original size:10 final size:10
Alignment explanation
Indices: 75449--75481 Score: 50
Period size: 10 Copynumber: 3.4 Consensus size: 10
75439 CCCAACTCCT
75449 ACCAGCACCC
1 ACCAGCACCC
*
75459 ACCAACACCC
1 ACCAGCACCC
75469 ACCAGCA-CC
1 ACCAGCACCC
75478 ACCA
1 ACCA
75482 CAACGCACCA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
9 6 0.29
10 15 0.71
ACGTcount: A:0.36, C:0.58, G:0.06, T:0.00
Consensus pattern (10 bp):
ACCAGCACCC
Left flanking sequence: Indices 74949 -- 75448
TTGTCAGAAGGTCAGTCTCGTAAAACTCGCCCGAACGGTAATTATCGAATCGAGGGGAGTAGCCT
AGCATCCTTGACCGAGGAAGATCGGTAGTTCGGGGTAGTACCGGGCCACGGGTGAGATCTGGTGA
TTACTTGTGACTGCATTCTTAGATGCATCCTGTCTTATGGCTGTTTTGGGAAGGAATGTGTCTGG
CTCCCGTCAATCAAAGACTCCATGCCAAAATACGAGGCCATCTAGACCACCCGAGTGACTTAACG
TGATCACCCGGTGTTTTACAGCAGCTCTTGAATACTGGGGGATGATATCACGATAAAATCATGAC
TCAATCGTTGGTAACCGAACAAGTTAAACCAAAAACCCACGAACTCTACAAGTAGTCGTAGAGGA
ATTTTCGCAGTCGACTAGGAGGTTATTTTACAAGAAAGTGTCTTGATTATGAACCATGTAGAACC
ACCACAACCACGAACGGATACCAAGCCACATTTCGCCCAACTCCT
Right flanking sequence: Indices 75482 -- 75981
CAACGCACCAAAAAAGGCGTTGGGGGGTCTGGGGGGCGCCGCTCGCGGCCCCCCAGTAGCTGCAA
CACACCCCTACACCACCAACCACCACAATCCCACTGTCAACCACCACCTCTACTCACCACCTACC
CACCACCTCCAGCACTACTATCCGGCTCATCCAAACCTTGTCCCGTTAACTATATACATACTAGG
CCGCCACGGGGTCGGCGTGCTCCTCCTCGAGCTCGCGTTCCTTCGCAAACGCCTCCAACGCCTTG
AGGCGCAACTCGTCCAACATCACCGTCTGGTCCTTCGGGGAAAACGCCGGCAACTCGGAGTGGCG
CACCAACTCGGCGTCCCACAACAGGTCGTCGCCCTTGCGCCACAACAGCTCCCACGCCACCTCGG
TGTTCTCGAGGCCAAACTCGTCGATCACGTGATTCAAGTCAGCCACCGCCTCCTGGGTGTAGGTG
GGCCGGTACTGGCCCAGGTACCAGGTGTTGCCCTCGTCGTCCTTG
Found at i:79894 original size:25 final size:26
Alignment explanation
Indices: 79866--79920 Score: 67
Period size: 25 Copynumber: 2.2 Consensus size: 26
79856 ATCACCAGCC
* *
79866 ACAATTGATCCTTACAATTGTTC-CT
1 ACAAATGATCCCTACAATTGTTCACT
* *
79891 ACAAATGATCCCTGCGATTGTTCACT
1 ACAAATGATCCCTACAATTGTTCACT
79917 ACAA
1 ACAA
79921 CACTCCGATC
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
25 19 0.76
26 6 0.24
ACGTcount: A:0.31, C:0.25, G:0.11, T:0.33
Consensus pattern (26 bp):
ACAAATGATCCCTACAATTGTTCACT
Left flanking sequence: Indices 79366 -- 79865
TTGTCGTTGTCGGGCAAGGCCAACACGCTGGCGCAGGTGGCGATGGAGGAGGTGCGGTTTATCGA
CCACTGGTTCGACGTGGTGTTTGCGGTGAGCGCGGTGGTGACGATGGTGGGCATCTGGGTGCGCC
GCAACATCGCTGACGATATCTACGACGAGGAGATGTTGATCGAGACGGCCAAGACGATGTAGAGG
AAAAAGTCTGGTCGACTAGACAGTCGCTTATCTGGACACAAACCTATCAGACAGCGTTGGTGCAG
GTTGGATGCCTGGCCAAGACAGGGTTGCGTTCCAAATGGTTACTCGTGACTAGAGATTGATGGCA
ATGGCATCGGATTCTGACGATTAAGGATGGACACCTATCCCTGGACGTGCGTTATTGCGTGTACT
GCCAGTTGAACCAGCTTGTTTCACCAATTGAATCGTGAGCGTTTGGAATTTGTCTCCTTCACGGA
CTACTGGTATCATCCATTCACGGGGTATTGGTGCAATCACCAGCC
Right flanking sequence: Indices 79921 -- 80420
CACTCCGATCGTTGCATTGTTCGTAAACTAGACTCGTTTTCACTACGTTTGTATCGTCGTCCTTC
ATGCCTGCCCCAGCCTCGCCCCTTACCAAAGAAGCCCATCTTACGACGCTTCCCCTCTGCGGAAC
GGACGCCATCGCGGTCCGACAAAAACTCAGGCCACAACCGCCTTGGTCAGCATGTGTTTCGCGAG
CACATGCTCGTGGCACGATAGAACAATAAACAAAAAGTAGCATCGCCATGGGCATCCGTAGACGC
CACTCGCCACCCAGACCGGCTCGTTTTTCCACTCACCACCCCTTCGACGCTATACCCCTGTGGGG
TAGGTTCTTTACGTGCTTTTCCGTAATTAGCACCCTTTTGGGCGCAGGGTAACCGTGCATAACGC
GGGGTTTCACATGCCTGCCCGCGGCCGTTGGGACGGTTAAACGAGGCTAATGACGGCGGGAACGA
GACAAAGAGCGTTTTGAGAGCCACCCCGCAACCCCACCAGCCCGT
Found at i:82452 original size:11 final size:11
Alignment explanation
Indices: 82436--82463 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
82426 CATCGGAGTT
82436 CGGCCGCAGCA
1 CGGCCGCAGCA
82447 CGGCCGCAGCA
1 CGGCCGCAGCA
82458 CGGCCG
1 CGGCCG
82464 TTCATTGACA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.14, C:0.46, G:0.39, T:0.00
Consensus pattern (11 bp):
CGGCCGCAGCA
Left flanking sequence: Indices 81936 -- 82435
TTAAGGTGCTGAAGCCGGTGCGCGAAGGCAAAGCGCGCCTGGTGGAGGTGAAGCCCGAGGCCTAC
GACAGCTGGTTGACCCGGGTGCAGCACGACCTCAAGGAGTGCGTGTTTGGCACCCCGTTTGGCGG
GTGCGTGTCGTGGTACGCCACCGCCAAGACCAACTTCACCACGTTGCCGTGGTCGCAGCTCACCT
ACTGGTGGCTCACCCACTGGGTCAACTACCGCGACTTGGTCTACGTGCCTGCCGAGAAAAAGACG
GCCTGATCGGCCGTCGGCATTAGCCCCTGGCACATGCACGGCGTGTATGCAGGTGTGTGGGGTAC
CTCGAGCCCGATACAGAATATATGAACGTAATCAGAGCCGTAGCAGCGCAAGCACGCGCCGTAGC
CCGGTCCTCCCCTTTTCTCCGTTTCCGCAATCCCCCAGCTGGCGTCCCTTCTTCTCCACATGCTA
CCCCGCTTCCCCAGATTTCTCCGGATCTTGCTTCGCATCGGAGTT
Right flanking sequence: Indices 82464 -- 82963
TTCATTGACACATTCACATGTGAGTCGCGGGGAACATAAATAGCACCCCTACCGCCGTGCACACC
CCATCGATGAGTGTTGTCACGTTAAGCAAGCGCTCGCACACCGTGCCCGACCAGTTCCGCGTGCA
ATACCCCGACGCGGCCAAGGTGCTTCTTCCCAAGGCCACCGTCCCCACCAACGATGCGTTGCCCG
TGATCCGGTCCAAGCTGAAGGTGGCTGTCATCGGAGCTGGTTTCTCCGGGTTGGCGGCGCTGATG
ATGATCCAGAACAAGCTCAAGACCGACGACTACGTGGTGTTTGACCGGGTGAAGGGTGTCGGAGG
CACCTGGTGGATGAACACCTACCCCGGGTGCCTGCTGGACGTGCCGGCGTTGTTGTACCTGTTCT
CCAACGAGTTGTGCCTGAACTGGTCGCTCCCCCAGCCCATCTACCACGAAATGCAGACCTACATC
TCCGACGTCGTCGACAAGCACGACTTGCGCAGACACATCCAGTTG
Found at i:84362 original size:17 final size:18
Alignment explanation
Indices: 84324--84366 Score: 61
Period size: 17 Copynumber: 2.4 Consensus size: 18
84314 TATAGTCTGG
84324 GCATGAGAAAGTCCCGTA
1 GCATGAGAAAGTCCCGTA
* *
84342 GCATGAGATAGT-CCGTC
1 GCATGAGAAAGTCCCGTA
84359 GCATGAGA
1 GCATGAGA
84367 CATTCTCCCG
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 12 0.52
18 11 0.48
ACGTcount: A:0.30, C:0.21, G:0.30, T:0.19
Consensus pattern (18 bp):
GCATGAGAAAGTCCCGTA
Left flanking sequence: Indices 83824 -- 84323
CTACTTCGCGTTGGTGGGTCCCAACGCCGGCACCGGCCACTTTTCCGTGGTCACTGCCATCGAGA
ACGGGTGTGAGTTTGTTGCGAAGGTGCTGAAGCGGATCCTCGACGAGGGGGTGTCGGTGCGGGTC
AAGCCCGAGAAGTACGAGGAGTGGAAGGACACGGTGCAGAAGGAGCTTAAGAACTGTGTCTACGG
CACCGAGTTTGGCGGGTGCAAGTCGTGGTACACCGAGAACGGGCACAACGCCACGGCGTACCCGT
GGCTGCAGTACGTGTACTACAAGCGGACCCACAACCCCCAGTGGAAGGACATGATTTTCAAGAAG
GACTGTGACCTTTGTAGCAAGGAGAAGAAGGAATAGGTAGGTAGGGAATGGATTTATGACCGTAT
GATTGCACAATGGCGGAGGGAGACAATGGTGGTGCCAAGTAGTGAGGGGCTTACGGCCTACCACG
TGTCTCCGGGGATAGGCTGGCATGAGATAGTATGGTATAGTCTGG
Right flanking sequence: Indices 84367 -- 84866
CATTCTCCCGTGGCCGGAGATAATCTCCGGTTCTTTGGCCCACATGCTGAGAAAGGCTCTGAAGC
GATGATAGTGACATATAAAAACCTCCAAGAGTATACAGGTGACATGTTAGTGTGGGGGATGGTCT
GTGGAGCTGATGTGTTGAGATGATATGTGGATACCGTGTCCGTGATTGATTAGATACTCATGTAG
ATGTTTCATCAACACCATACTTTTACTAAAATCTTGAAAATTAACACATATTCCGGGCCACCCAC
CCCAACCTAATCTCAGACCAGATCCATTGTTGCTAACACGCCGCCCCAGCAACCCAATTGTAAAC
ACTGGTCACTGTTTACACCCCAGATTAGGTTTGCGCTTCCCCTCACGGACATTCAAGTCCACCAC
TCCTCCACCCTGAAACAAGTTCTGGGCATGGCCTCGCCAATTGGCCCGTGCCCAGCTCTTCACTG
CAACCAACAGTATCACTCCTACCCTCAGCCCACCCTAGACGTACC
Found at i:87360 original size:11 final size:11
Alignment explanation
Indices: 87344--87401 Score: 80
Period size: 11 Copynumber: 5.0 Consensus size: 11
87334 GGTGGATTCA
87344 TGGGTGTGGAT
1 TGGGTGTGGAT
*
87355 TGGGTGTGAATT
1 TGGGTGTGGA-T
87367 TGTAGGTGTGGAT
1 TG--GGTGTGGAT
87380 TGGGTGTGGAT
1 TGGGTGTGGAT
87391 TGGGTGTGGAT
1 TGGGTGTGGAT
87402 CCAGGGTTTG
Statistics
Matches: 42, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
11 29 0.69
12 3 0.07
13 3 0.07
14 7 0.17
ACGTcount: A:0.12, C:0.00, G:0.50, T:0.38
Consensus pattern (11 bp):
TGGGTGTGGAT
Left flanking sequence: Indices 86844 -- 87343
GTACCTGTTGTTCGAGCACTCGTTCTACACCCGTGCGGGCGACGCTGACCGCGGGGTGTTGAGCT
TGCCGCCGCTCGTGGCGCCCACCAAGGTGTTGTTGGTGCCTCTTTCCAACGCGGCCGAGCTTAAG
CCCATCACCCAGAAGGTGAGTGCCTACCTCCGCAAGCAGAAGCTCCCCTTCAAGGTGGACGACTC
GCTGGCGTCCATTGGCAAGCGTTACGCGCGTAACGACGAGTTGGGGACCCCCTTCGGCATCACCA
TCGACTTTGACTCCACCAAGGACGAGTCGGTGACCCTCCGTGACCGTGACTCCACCACCCAGGTG
AGAGGCACCTTCGAGGACGTGGTGGACGCCATCAAGGCCATGACCTACGACGGGGTGGCGTGGGA
CGAGGGCACCAAGAACTTGACCAAGTTCGAGGGCCAGACCGGTGACGCCGAGTAAGTAGATTAGA
CAAAACGTTGACTAGATTGTGTAGTGGTGGGGTCGGGTGGATTCA
Right flanking sequence: Indices 87402 -- 87901
CCAGGGTTTGACACTGGGGTAGTAATTACGTGCTTGTTTGGTGTCTGGGACTGACAGATCAATAA
GTGACCTGAGCTTGGGAATCACTTCCTATCACTTCCTATGCTTGGTTATGGTCCTTGTTCTCAGT
GGTCAGTCATCCCGCTGGACGCGTAATGATCTTACCCGGTGTTTTCTACAATTCACAGCTTCCTT
TCCTTGATGACTCGTGACTCGTTACTATATATTATGAAGGGTTCTCTGGTGTGTCGACTCGACTC
TGGTGTCGACGACTCGCCTACTCATCGGGGATACGCGACTTGCGCTTGCGGGCGGGCGGGCTCGA
GGCCGACCCGTCGTCGGACGGCGCGGCTGGCACGCTGGGAGACCCGGCGCCCTGGTCGCGTGGCT
CCACCACGTCCTCGTAGTCGTCGATCGTCGTGCCGTTGGCGGTGCCCTGCTTCTTCATCATCTGT
TTGAGATAGTTTGTCGAGCTCAACGAGAAGATGTGGTCGTCCTCA
Found at i:87664 original size:19 final size:20
Alignment explanation
Indices: 87640--87677 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
87630 ATGAAGGGTT
*
87640 CTCTGGTGT-GTCGACTCGA
1 CTCTGGTGTCGACGACTCGA
87659 CTCTGGTGTCGACGACTCG
1 CTCTGGTGTCGACGACTCG
87678 CCTACTCATC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.11, C:0.29, G:0.32, T:0.29
Consensus pattern (20 bp):
CTCTGGTGTCGACGACTCGA
Left flanking sequence: Indices 87140 -- 87639
TCCGTGACCGTGACTCCACCACCCAGGTGAGAGGCACCTTCGAGGACGTGGTGGACGCCATCAAG
GCCATGACCTACGACGGGGTGGCGTGGGACGAGGGCACCAAGAACTTGACCAAGTTCGAGGGCCA
GACCGGTGACGCCGAGTAAGTAGATTAGACAAAACGTTGACTAGATTGTGTAGTGGTGGGGTCGG
GTGGATTCATGGGTGTGGATTGGGTGTGAATTTGTAGGTGTGGATTGGGTGTGGATTGGGTGTGG
ATCCAGGGTTTGACACTGGGGTAGTAATTACGTGCTTGTTTGGTGTCTGGGACTGACAGATCAAT
AAGTGACCTGAGCTTGGGAATCACTTCCTATCACTTCCTATGCTTGGTTATGGTCCTTGTTCTCA
GTGGTCAGTCATCCCGCTGGACGCGTAATGATCTTACCCGGTGTTTTCTACAATTCACAGCTTCC
TTTCCTTGATGACTCGTGACTCGTTACTATATATTATGAAGGGTT
Right flanking sequence: Indices 87678 -- 88177
CCTACTCATCGGGGATACGCGACTTGCGCTTGCGGGCGGGCGGGCTCGAGGCCGACCCGTCGTCG
GACGGCGCGGCTGGCACGCTGGGAGACCCGGCGCCCTGGTCGCGTGGCTCCACCACGTCCTCGTA
GTCGTCGATCGTCGTGCCGTTGGCGGTGCCCTGCTTCTTCATCATCTGTTTGAGATAGTTTGTCG
AGCTCAACGAGAAGATGTGGTCGTCCTCAGAGTACTGGAGCCGCTTCTTGGCGGTGCTGCCGCTG
GCCTTGCTGAAGTTGTCAAACCCCTTGATGATGTTGCCGTACACACTCTCGTTGAAGTAGTCGTT
CTCCTTGTCGTAGATCTGGTCCTCGAGGTCGCTGAGCTTCTTCTCCAACTCCTGCTTCTTCAAGA
TCTCCTTGACCAAGTCGTCCTTGAGCTTGGTGTACTTGTCGGACTCCGACGCCTCGGTCTTCACT
TGTTCCTTGGGCGGTATTTTGGCGGTGGGTGGTGGTGCATTAAAT
Found at i:91134 original size:33 final size:32
Alignment explanation
Indices: 91071--91175 Score: 138
Period size: 33 Copynumber: 3.2 Consensus size: 32
91061 GAGCCGGAGA
* *
91071 TGCGGGGTTTGCCATGAAGGGGTGCTCTCGTAGT
1 TGCGGGGTATGCCATG-A-GGGCGCTCTCGTAGT
91105 TGCGGTGGTATGCCATGAGGGCGCTCTCGTAGT
1 TGCGG-GGTATGCCATGAGGGCGCTCTCGTAGT
* *
91138 TGTGGGGATATGCCATGAGGACGCTCTCGTAGT
1 TGCGGGG-TATGCCATGAGGGCGCTCTCGTAGT
91171 TGCGG
1 TGCGG
91176 TGGGGTACCC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
32 2 0.03
33 46 0.72
34 6 0.09
35 10 0.16
ACGTcount: A:0.13, C:0.19, G:0.40, T:0.28
Consensus pattern (32 bp):
TGCGGGGTATGCCATGAGGGCGCTCTCGTAGT
Left flanking sequence: Indices 90571 -- 91070
CGAATACCCCTTTATGGTTTACGAAGCGTGCATCTTTCCCAGTTTGGGTGATATAGTTAAAAACA
ATATAGCATCAAATCAGAAAAGAAACGAACAAGCGAACGTGGGGCGGGATTCCCCACATAATGGC
AACAGCGACATCTCCTGCGGTCCATTGTACGCGAGGGGTGCAACTGGTAGCGCGGGCCAAGAAAG
TGTTGGGTAGGGAGAGTGGGGGGATCCACGTGTGGTTGGTGGGATAGAACTTGAGGGGCCGAAAC
TTGGGGAATTGGCTTAATATCAGCTTTACGATTGGCCACGGAGCGAGGCAAGGGTGTGCTTTTAG
GTATGTAGGCACGAGGCTCCCAATTGGCCGTCCTTTGTTGATCTCGGACGATTCGTCGGGGATGT
CGGCAGCAGTGACGTTTCGCAATTGACGTCCCCGAAACGGCTGAAGACAGCACGTTTCAGGGGTA
CCGCGCTTTTCCAGTTGCCCTATAAGGCGTCCGTAGAGCCGGAGA
Right flanking sequence: Indices 91176 -- 91675
TGGGGTACCCAATCCTTCGTTGTACAGATCGTGGGGACCGGGGTATCTTTGCTTGAACCCTTAGA
TCCTAGACCCTTAGAGCAGTCCAGATTGCCTCGGCAGTCTGATCGCCTGGGCAGTCAGCTCGCCT
GGGCAGCTCGCCTGGGCAGTCAGATCGCCTGGGTAGTCCAGATTCAGAAGACTGCTCGTTCAGCC
CGTTATCGGACCGTTATCAGGCACGGCGCAACCCCGGATGCCCCGTGCGAGGCAAAGACCGCATG
TCGCCAAAAGTTGGGCATTTATAATCAAACGTTACCCGTCGCCTACGTTAATTGCCTATCGCGGA
CATTTTCGCAGGTGTTCGTATACCTACCGAACCGAAGTGTCTCGAACGCCCAGACGCCTCGATCC
ATGTCGCGTCTCACGCTCACTCTATCAACGATCCTCCCACAACCACCAGACAACCCCACTCTCCG
ATCTCTACAACCTATCTACGTCTCACCGTCTACGGCCCTTGTCTA
Found at i:91293 original size:17 final size:17
Alignment explanation
Indices: 91256--91348 Score: 95
Period size: 17 Copynumber: 5.6 Consensus size: 17
91246 GACCCTTAGA
* *
91256 GCAGTCCAGATTGCCTCG
1 GCAGT-CAGATCGCCTGG
*
91274 GCAGTCTGATCGCCTGG
1 GCAGTCAGATCGCCTGG
*
91291 GCAGTCAGCTCGCCTGG
1 GCAGTCAGATCGCCTGG
91308 GCAG-C---TCGCCTGG
1 GCAGTCAGATCGCCTGG
91321 GCAGTCAGATCGCCTGG
1 GCAGTCAGATCGCCTGG
*
91338 GTAGTCCAGAT
1 GCAGT-CAGAT
91349 TCAGAAGACT
Statistics
Matches: 64, Mismatches: 6, Indels: 10
0.80 0.08 0.12
Matches are distributed among these distances:
13 12 0.19
14 1 0.02
16 1 0.02
17 40 0.62
18 10 0.16
ACGTcount: A:0.15, C:0.31, G:0.33, T:0.20
Consensus pattern (17 bp):
GCAGTCAGATCGCCTGG
Left flanking sequence: Indices 90756 -- 91255
GCCAAGAAAGTGTTGGGTAGGGAGAGTGGGGGGATCCACGTGTGGTTGGTGGGATAGAACTTGAG
GGGCCGAAACTTGGGGAATTGGCTTAATATCAGCTTTACGATTGGCCACGGAGCGAGGCAAGGGT
GTGCTTTTAGGTATGTAGGCACGAGGCTCCCAATTGGCCGTCCTTTGTTGATCTCGGACGATTCG
TCGGGGATGTCGGCAGCAGTGACGTTTCGCAATTGACGTCCCCGAAACGGCTGAAGACAGCACGT
TTCAGGGGTACCGCGCTTTTCCAGTTGCCCTATAAGGCGTCCGTAGAGCCGGAGATGCGGGGTTT
GCCATGAAGGGGTGCTCTCGTAGTTGCGGTGGTATGCCATGAGGGCGCTCTCGTAGTTGTGGGGA
TATGCCATGAGGACGCTCTCGTAGTTGCGGTGGGGTACCCAATCCTTCGTTGTACAGATCGTGGG
GACCGGGGTATCTTTGCTTGAACCCTTAGATCCTAGACCCTTAGA
Right flanking sequence: Indices 91349 -- 91848
TCAGAAGACTGCTCGTTCAGCCCGTTATCGGACCGTTATCAGGCACGGCGCAACCCCGGATGCCC
CGTGCGAGGCAAAGACCGCATGTCGCCAAAAGTTGGGCATTTATAATCAAACGTTACCCGTCGCC
TACGTTAATTGCCTATCGCGGACATTTTCGCAGGTGTTCGTATACCTACCGAACCGAAGTGTCTC
GAACGCCCAGACGCCTCGATCCATGTCGCGTCTCACGCTCACTCTATCAACGATCCTCCCACAAC
CACCAGACAACCCCACTCTCCGATCTCTACAACCTATCTACGTCTCACCGTCTACGGCCCTTGTC
TACCGTCGCCGGCCCTTCTCCACCACCGTCTCTCTTCGTCACCTTAACGCGCACAGAATTTTTCA
ACCACCATGGATTTCATGAAGAGGCAAACGGTGCTCGAGTTGGGCAACATTCGGAACGCGTTGGT
GCGGATGGAGGACACCATCGTGTTTGCGCTCATCGAGCGGTCCCA
Found at i:91314 original size:13 final size:13
Alignment explanation
Indices: 91296--91324 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
91286 CCTGGGCAGT
91296 CAGCTCGCCTGGG
1 CAGCTCGCCTGGG
91309 CAGCTCGCCTGGG
1 CAGCTCGCCTGGG
91322 CAG
1 CAG
91325 TCAGATCGCC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.10, C:0.38, G:0.38, T:0.14
Consensus pattern (13 bp):
CAGCTCGCCTGGG
Left flanking sequence: Indices 90796 -- 91295
TGTGGTTGGTGGGATAGAACTTGAGGGGCCGAAACTTGGGGAATTGGCTTAATATCAGCTTTACG
ATTGGCCACGGAGCGAGGCAAGGGTGTGCTTTTAGGTATGTAGGCACGAGGCTCCCAATTGGCCG
TCCTTTGTTGATCTCGGACGATTCGTCGGGGATGTCGGCAGCAGTGACGTTTCGCAATTGACGTC
CCCGAAACGGCTGAAGACAGCACGTTTCAGGGGTACCGCGCTTTTCCAGTTGCCCTATAAGGCGT
CCGTAGAGCCGGAGATGCGGGGTTTGCCATGAAGGGGTGCTCTCGTAGTTGCGGTGGTATGCCAT
GAGGGCGCTCTCGTAGTTGTGGGGATATGCCATGAGGACGCTCTCGTAGTTGCGGTGGGGTACCC
AATCCTTCGTTGTACAGATCGTGGGGACCGGGGTATCTTTGCTTGAACCCTTAGATCCTAGACCC
TTAGAGCAGTCCAGATTGCCTCGGCAGTCTGATCGCCTGGGCAGT
Right flanking sequence: Indices 91325 -- 91824
TCAGATCGCCTGGGTAGTCCAGATTCAGAAGACTGCTCGTTCAGCCCGTTATCGGACCGTTATCA
GGCACGGCGCAACCCCGGATGCCCCGTGCGAGGCAAAGACCGCATGTCGCCAAAAGTTGGGCATT
TATAATCAAACGTTACCCGTCGCCTACGTTAATTGCCTATCGCGGACATTTTCGCAGGTGTTCGT
ATACCTACCGAACCGAAGTGTCTCGAACGCCCAGACGCCTCGATCCATGTCGCGTCTCACGCTCA
CTCTATCAACGATCCTCCCACAACCACCAGACAACCCCACTCTCCGATCTCTACAACCTATCTAC
GTCTCACCGTCTACGGCCCTTGTCTACCGTCGCCGGCCCTTCTCCACCACCGTCTCTCTTCGTCA
CCTTAACGCGCACAGAATTTTTCAACCACCATGGATTTCATGAAGAGGCAAACGGTGCTCGAGTT
GGGCAACATTCGGAACGCGTTGGTGCGGATGGAGGACACCATCGT
Found at i:91680 original size:20 final size:21
Alignment explanation
Indices: 91650--91690 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
91640 ACCTATCTAC
*
91650 GTCTCACCGTCTACGGCCCTT
1 GTCTCACCGTCGACGGCCCTT
*
91671 GTCT-ACCGTCGCCGGCCCTT
1 GTCTCACCGTCGACGGCCCTT
91691 CTCCACCACC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 14 0.78
21 4 0.22
ACGTcount: A:0.07, C:0.44, G:0.22, T:0.27
Consensus pattern (21 bp):
GTCTCACCGTCGACGGCCCTT
Left flanking sequence: Indices 91150 -- 91649
CCATGAGGACGCTCTCGTAGTTGCGGTGGGGTACCCAATCCTTCGTTGTACAGATCGTGGGGACC
GGGGTATCTTTGCTTGAACCCTTAGATCCTAGACCCTTAGAGCAGTCCAGATTGCCTCGGCAGTC
TGATCGCCTGGGCAGTCAGCTCGCCTGGGCAGCTCGCCTGGGCAGTCAGATCGCCTGGGTAGTCC
AGATTCAGAAGACTGCTCGTTCAGCCCGTTATCGGACCGTTATCAGGCACGGCGCAACCCCGGAT
GCCCCGTGCGAGGCAAAGACCGCATGTCGCCAAAAGTTGGGCATTTATAATCAAACGTTACCCGT
CGCCTACGTTAATTGCCTATCGCGGACATTTTCGCAGGTGTTCGTATACCTACCGAACCGAAGTG
TCTCGAACGCCCAGACGCCTCGATCCATGTCGCGTCTCACGCTCACTCTATCAACGATCCTCCCA
CAACCACCAGACAACCCCACTCTCCGATCTCTACAACCTATCTAC
Right flanking sequence: Indices 91691 -- 92190
CTCCACCACCGTCTCTCTTCGTCACCTTAACGCGCACAGAATTTTTCAACCACCATGGATTTCAT
GAAGAGGCAAACGGTGCTCGAGTTGGGCAACATTCGGAACGCGTTGGTGCGGATGGAGGACACCA
TCGTGTTTGCGCTCATCGAGCGGTCCCAGTTCTTCCTGCTGCCGTCGGTGTACGCCGTCAACAAG
TTCTCCATCCCCAACTTTTCGGGCACCTTCCTCGGGTGGACGCTCTTGCAACAGGAAAAGGCCCA
CTCGCAGATCCGGCGGTTCGAGGCGCCCGACGAGACCCCCTTCTTCCCCGACCAGTTGCAGCAGC
CCATCTTGCCCCCCATCAACTACCCCAAGGTGTTGGCCCACTACACCGACGAAATCAACGAGAAC
ACCGAGATCATGCGGTTCTACGTGGAGGAGATCGTGCCCAAGATTGCCTGTGCCGCGGGCGAGCA
GATGGAGAACTTGGGCTCGGTGGCCTGCTGCGACATCGAGTGTCT
Found at i:95898 original size:8 final size:8
Alignment explanation
Indices: 95875--95919 Score: 63
Period size: 8 Copynumber: 5.5 Consensus size: 8
95865 CCTTTACCAA
95875 CATTCACC
1 CATTCACC
95883 CTATTCACC
1 C-ATTCACC
95892 CATTCACC
1 CATTCACC
*
95900 CATTCCCC
1 CATTCACC
*
95908 CATTCCCC
1 CATTCACC
95916 CATT
1 CATT
95920 GCCCTTTCCC
Statistics
Matches: 35, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
8 27 0.77
9 8 0.23
ACGTcount: A:0.20, C:0.51, G:0.00, T:0.29
Consensus pattern (8 bp):
CATTCACC
Left flanking sequence: Indices 95375 -- 95874
AAAAGTAAGAGACGGGATGATACAGGTGCGAATGGTCTAGGAGGATGATCCAGGTGATACGTTGG
ACGGGCAACAGCGGTAGGCACGTGGGTGTAATCTGAGGTCGGTTGGAGCTTCTCTATGCACAGCT
GACGTGGAAACAAAGACGTGGGAGCCACAAATGGCAGCAGCTGCACGAGAACAAAGACAGCAACC
GGTCACGGTCCGCCCGATTTCATGGCCACCATGCATTGGACCCCGTGCTTCAGCCGTGGTCGTGC
GCGGCCCGAGGCGTGCCTGGCCCAGTTCAGGAGTCCGGGGTATGCCGGAAAAGGGCCGTTAGGGG
TGGAATTTTGATCAACTAAGAACGATCAATTATTCAAATACACCACTACAGAATCAACCATCACA
CATAAACCACTCTTACAACACTCTTACCAACCACTCACACCCATCCATACTACCACCCATACTAA
CCACCATACCACCAACCTTACTACCTCACTAACTACCTTTACCAA
Right flanking sequence: Indices 95920 -- 96419
GCCCTTTCCCCTTACCAACCTTCTCCCTTCCCCACTCCCATTCTCCACCAATCCTCTCCCATCCC
TCTTCCCGCCGTATGACTCTTCGCACAACGCCGTGGTGACTCATAACCAGCACCCTCCCGTTATC
GGCGATTTTTCACAGAAAAATTCTTCATCGCCCACCATGTTCTGGCAAGAGTACTTGGACAACCC
GACGCTCTCGGTGTTGCCGCACGACTTCTTGAAGCCCGCCAACAACCAGGCGGTCGAGGCCTCGC
TCGACTTCCCGCTCGCGGCCCCCTTCGTCGACACCCTAGCAGCGTTCGCCGCGTTGATCTACCGG
TTGACGGGGGACGACGACATTGTCATCGCCACCGACGCCCTGCCCGACACCCCGCTGTTCGTGGT
GCGGTTGCGGTTGACCCCCGAGCTCACCAAGGCGCAATTGGTGCTGATGGTGCACCGCGAAATGG
CCCACCGCGAGCACATCGACTACACGTCGCTCCTGGAGGTGGCCG
Found at i:100615 original size:21 final size:21
Alignment explanation
Indices: 100591--100636 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 21
100581 TTGACGGGGG
*
100591 GCGGCTGGAAGTCGGCCTGGC
1 GCGGCTGAAAGTCGGCCTGGC
* **
100612 GCGGTTGAAAGTCGGGTTGGC
1 GCGGCTGAAAGTCGGCCTGGC
100633 GCGG
1 GCGG
100637 TTGGTACTCG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.11, C:0.22, G:0.50, T:0.17
Consensus pattern (21 bp):
GCGGCTGAAAGTCGGCCTGGC
Left flanking sequence: Indices 100091 -- 100590
CCGACGCAAAATTCCATATTCAATATATTTTCTCAGAGGTTGCAGGAATTCCAGATCCTTCTGCG
CATGCACAAGGCACGCGGCAAATACGCTAGTTACAGAGACGAATGTGTATTAGAATGGTAGAATT
CAAGGGTTGCGTGCGGCCAACTCCTGGCGCAAGTGGCCGTTTTCCTGGGTCAACCGCGTGACCTC
GTGCTGCAAGTAGATAATGTAGTTGGTGGCGACGTCGAGGATCTCCGTCTTGTTGAGGCGCTTGC
CCGGGGGGCCGGGGGTGTGGGGGGCGGGGTCGAGGCCCACCAGGAACGCGGGGCGCGCCTTGGCC
GTCCAGGGAATCGTGCGCTGGAGGCACGCCATCTTGGCGTTGATGTTTTCGCGGTACTTCTTCTC
GACGCGGTTGTGCTTCTTGAGCCGCGACTGGAGGAGCTCGGACTGCAGCGCGGCAAACGGGGTCT
GCGGGGCCTGGGGCGAGGGTGTGGGCGGCTCCACCTTGACGGGGG
Right flanking sequence: Indices 100637 -- 101136
TTGGTACTCGGGTTGCGGCCACAGCGGTGGCGCGGCATTAGGGTTCAGGTTCATCCATAGATCCC
ACCGGTCAGGGTGGGGGGCAGAGCTGCTGGCCATGCGAATCCATTCGTCATCCCCCTCTTGCATC
GGATTGGTGTTTTTGTCGGGCGGATTCAACGTGGTGGTTCGTTCATAGTTGGCGGCCCCGCGTTT
GCCCTGACTTATATACTGCGATCGCCGGTGTGCATCACCGAAGACGGTAGAACAAACCCGCCACT
AAAAGCAATCTTGCATTGCGCCTTCGAAGCTGGCCAAGTGGGCCCACTTTGGCGCCGGCACAAAC
GCGGGTCGGGGCCCGCTGCCTGGGCCGCCCGCGCGGTCTACGTTCCCCCGGGTCGCCCGCTGGCG
TGGCCGCCACCGCCCACCGCAGCACTCCTTGTTGCTGAAAATCCCCTGTGGCTCTATGCAGACAC
ATCAGTTACCCTTACGGGCGTATTGTTTTCCCCTCGACGTGGCTC
Found at i:100637 original size:21 final size:21
Alignment explanation
Indices: 100599--100639 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
100589 GGGCGGCTGG
100599 AAGTCGGCCTGGCGCGGTTGA
1 AAGTCGGCCTGGCGCGGTTGA
**
100620 AAGTCGGGTTGGCGCGGTTG
1 AAGTCGGCCTGGCGCGGTTG
100640 GTACTCGGGT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.12, C:0.20, G:0.46, T:0.22
Consensus pattern (21 bp):
AAGTCGGCCTGGCGCGGTTGA
Left flanking sequence: Indices 100099 -- 100598
AAATTCCATATTCAATATATTTTCTCAGAGGTTGCAGGAATTCCAGATCCTTCTGCGCATGCACA
AGGCACGCGGCAAATACGCTAGTTACAGAGACGAATGTGTATTAGAATGGTAGAATTCAAGGGTT
GCGTGCGGCCAACTCCTGGCGCAAGTGGCCGTTTTCCTGGGTCAACCGCGTGACCTCGTGCTGCA
AGTAGATAATGTAGTTGGTGGCGACGTCGAGGATCTCCGTCTTGTTGAGGCGCTTGCCCGGGGGG
CCGGGGGTGTGGGGGGCGGGGTCGAGGCCCACCAGGAACGCGGGGCGCGCCTTGGCCGTCCAGGG
AATCGTGCGCTGGAGGCACGCCATCTTGGCGTTGATGTTTTCGCGGTACTTCTTCTCGACGCGGT
TGTGCTTCTTGAGCCGCGACTGGAGGAGCTCGGACTGCAGCGCGGCAAACGGGGTCTGCGGGGCC
TGGGGCGAGGGTGTGGGCGGCTCCACCTTGACGGGGGGCGGCTGG
Right flanking sequence: Indices 100640 -- 101139
GTACTCGGGTTGCGGCCACAGCGGTGGCGCGGCATTAGGGTTCAGGTTCATCCATAGATCCCACC
GGTCAGGGTGGGGGGCAGAGCTGCTGGCCATGCGAATCCATTCGTCATCCCCCTCTTGCATCGGA
TTGGTGTTTTTGTCGGGCGGATTCAACGTGGTGGTTCGTTCATAGTTGGCGGCCCCGCGTTTGCC
CTGACTTATATACTGCGATCGCCGGTGTGCATCACCGAAGACGGTAGAACAAACCCGCCACTAAA
AGCAATCTTGCATTGCGCCTTCGAAGCTGGCCAAGTGGGCCCACTTTGGCGCCGGCACAAACGCG
GGTCGGGGCCCGCTGCCTGGGCCGCCCGCGCGGTCTACGTTCCCCCGGGTCGCCCGCTGGCGTGG
CCGCCACCGCCCACCGCAGCACTCCTTGTTGCTGAAAATCCCCTGTGGCTCTATGCAGACACATC
AGTTACCCTTACGGGCGTATTGTTTTCCCCTCGACGTGGCTCGAG
Found at i:100647 original size:21 final size:21
Alignment explanation
Indices: 100608--100651 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
100598 GAAGTCGGCC
*
100608 TGGCGCGGTTGAAAGTCGGGT
1 TGGCGCGGTTGAAACTCGGGT
**
100629 TGGCGCGGTTGGTACTCGGGT
1 TGGCGCGGTTGAAACTCGGGT
100650 TG
1 TG
100652 CGGCCACAGC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.09, C:0.16, G:0.48, T:0.27
Consensus pattern (21 bp):
TGGCGCGGTTGAAACTCGGGT
Left flanking sequence: Indices 100108 -- 100607
ATTCAATATATTTTCTCAGAGGTTGCAGGAATTCCAGATCCTTCTGCGCATGCACAAGGCACGCG
GCAAATACGCTAGTTACAGAGACGAATGTGTATTAGAATGGTAGAATTCAAGGGTTGCGTGCGGC
CAACTCCTGGCGCAAGTGGCCGTTTTCCTGGGTCAACCGCGTGACCTCGTGCTGCAAGTAGATAA
TGTAGTTGGTGGCGACGTCGAGGATCTCCGTCTTGTTGAGGCGCTTGCCCGGGGGGCCGGGGGTG
TGGGGGGCGGGGTCGAGGCCCACCAGGAACGCGGGGCGCGCCTTGGCCGTCCAGGGAATCGTGCG
CTGGAGGCACGCCATCTTGGCGTTGATGTTTTCGCGGTACTTCTTCTCGACGCGGTTGTGCTTCT
TGAGCCGCGACTGGAGGAGCTCGGACTGCAGCGCGGCAAACGGGGTCTGCGGGGCCTGGGGCGAG
GGTGTGGGCGGCTCCACCTTGACGGGGGGCGGCTGGAAGTCGGCC
Right flanking sequence: Indices 100652 -- 101151
CGGCCACAGCGGTGGCGCGGCATTAGGGTTCAGGTTCATCCATAGATCCCACCGGTCAGGGTGGG
GGGCAGAGCTGCTGGCCATGCGAATCCATTCGTCATCCCCCTCTTGCATCGGATTGGTGTTTTTG
TCGGGCGGATTCAACGTGGTGGTTCGTTCATAGTTGGCGGCCCCGCGTTTGCCCTGACTTATATA
CTGCGATCGCCGGTGTGCATCACCGAAGACGGTAGAACAAACCCGCCACTAAAAGCAATCTTGCA
TTGCGCCTTCGAAGCTGGCCAAGTGGGCCCACTTTGGCGCCGGCACAAACGCGGGTCGGGGCCCG
CTGCCTGGGCCGCCCGCGCGGTCTACGTTCCCCCGGGTCGCCCGCTGGCGTGGCCGCCACCGCCC
ACCGCAGCACTCCTTGTTGCTGAAAATCCCCTGTGGCTCTATGCAGACACATCAGTTACCCTTAC
GGGCGTATTGTTTTCCCCTCGACGTGGCTCGAGCGTGTTTCACAT
Found at i:102453 original size:27 final size:27
Alignment explanation
Indices: 102375--102459 Score: 73
Period size: 26 Copynumber: 3.1 Consensus size: 27
102365 CAACGAACTC
* * *
102375 CACCTATTCCTCTATCAACATCTGTCTC
1 CACCAATTCCTCTA-CAACATCTGCCTA
* * * *
102403 CACTATTTCCACTAC-TCATCTGCCTA
1 CACCAATTCCTCTACAACATCTGCCTA
* *
102429 CACCAATTCCTCTACAGCATCTGCCTG
1 CACCAATTCCTCTACAACATCTGCCTA
102456 CACC
1 CACC
102460 TCTACCCACC
Statistics
Matches: 44, Mismatches: 12, Indels: 3
0.75 0.20 0.05
Matches are distributed among these distances:
26 20 0.45
27 14 0.32
28 10 0.23
ACGTcount: A:0.22, C:0.41, G:0.06, T:0.31
Consensus pattern (27 bp):
CACCAATTCCTCTACAACATCTGCCTA
Left flanking sequence: Indices 101875 -- 102374
ACCGTGAGTCCCCGGAACAATACCCAACTGCGGTCGTTATTGCCATTCTGGAAACGAGGCGGGTG
AGACGAGGCATGGGGGAAGTGCCTGCTTACAAAATTATAATTTGCATTCCCACCGTGCTGAATGA
AACTCCATTGTTCTGTGGCTGCGCCACGGTAACGTTCCCCACAATGCCAGTGTCGATCACTACCA
ACCGAAATTGACTGATTTCCTGTCAAGATGGTTAATGTCACACGAGAAGCCGTGAACTAGTAACT
GTAATTTCCTACAACGGCTGCAATGTCTGTTGCCCAATGACTACTGAAAATATAACCACGAGTAG
TGCTAGACTGCACTTGACTGCTGCCACTAGCTACTACACTGTAGACTACTGCAACAAGATTACTA
CAAAGGTTTGACTACTGCAACAGGACCACCACATCGGTTTGACCATACAGTAAACACATCAAACA
AAGCATGGAGCTTACCCCACACTGATGCCTCCATGCAACGAACTC
Right flanking sequence: Indices 102460 -- 102959
TCTACCCACCCCTTTCCCCCTACTCTCTATCTCGTGTATTATCGTAATGTGGACTGCTATCCTAG
CCTGTTTGTCAAATGGCCACCGCCTGGAAGCCCTTGCCCCCCACCACACCTATCCAGTCGCCGTG
GTCCTGGCGCCAGCACACGTTGTTGACCTCGGTGTCCTCCTCGTACGCCAACACCGGGCAGTCGA
TCACGGTGCCCAGATCGCCCACGATCTTCGAGCAGTCCCACACGAGCGCCTGGCAGTCGTCGCCC
CCGGTCAACAAAAAGTTCGACGACGGATGCCACTGGATCAGGTTGATGGGCGCGTTCAGCACCCC
GCCAAGCAGCCCGTCGATCGTCGCCACGGGAAGGCCCGGCATTCGCATGTCGATGATGATCACCT
CGTTCGAGTTGACGCCAATGGTGGCCAAGTGGTGCTGGTCGATGTTGGACGTCAGCAACTTCAAA
AGCGCCGTCAGCTTCTTCAGCACCGCCGGCTCGTAGATAATCGTC
Found at i:109842 original size:12 final size:12
Alignment explanation
Indices: 109825--109864 Score: 53
Period size: 12 Copynumber: 3.3 Consensus size: 12
109815 TTCCTCGTCC
109825 TCGTTGTTAGTG
1 TCGTTGTTAGTG
*
109837 TCGTTGTTGGTG
1 TCGTTGTTAGTG
* *
109849 TCATTGTTCGTG
1 TCGTTGTTAGTG
109861 TCGT
1 TCGT
109865 CGTTCGTATC
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
12 24 1.00
ACGTcount: A:0.05, C:0.12, G:0.33, T:0.50
Consensus pattern (12 bp):
TCGTTGTTAGTG
Left flanking sequence: Indices 109325 -- 109824
GCGTGAGGATCACGTCGTACTGCTCGAGCTCCTTGACGTCTGTCGGACGGTTAGCCCCGTGGTAC
AAGAGCGTCTTGAGGCTGCCCGGCTCCGTGTGGGCCTCGATCTCGTTCTTCCACTGCATCAACGC
CACAGTGGGGCCCACCACGAGGTTGGGCCGTTTGGCGGGGTCAGACATGAAGAGCGCAATTGTCT
GAATGGTCTTACCCATCCCCATCTCGTCGGCAAGCACCCCACCGTTGAACTCGCCCTGTTCCTGT
TTGATGAGCCAGTGCAACCCCTCGAGCTGGAAGGGGAGAAGCTGGATAGTCATGCCCTTGGGATG
CGGGGCCTGGACGGGGGCACCGGGCTTGAGCTCGGCCAAGTGGTTGAACACCTCCTTCAATTCAG
GATGCTGCTCGTACAACTTGTTGGTGACCCTAGTGTAGTAGGGGATTTTGGGCTTGGGCTCCTTC
TTTTTCCGTGGGGCCCGCTTCTTTTTCTTGGGTTTTTCCTCGTCC
Right flanking sequence: Indices 109865 -- 110364
CGTTCGTATCGTCGTTGGTTTCGTCTTTGATGAGGGTGTCCTCCTCGTCCTTCACCTTCTTTGCA
CGGCCATTCTTGGCCTTTTTGGCGGTCCCGTTGGCCTTGCCGTTGCTCTCAGCGCCTGCCTTGGC
CGCCTTCGTGGCCAACAGCTCGTCATCGCTGCTGAAGAGCTCGATCACCTCGTTCGTATGCGACC
CGGTGATCTCTACGTCGTCGTCCTCGGGCTCAGACGCGTCTTCCGACTCGCTGGCAGCCTCGTCT
TCCACATAAGCGTCGTCGCTTTCGCTCTCGACCTTCACCTCTTTCTTGATTCGCTTGCGAGGCTC
CGTTACCGGCACAAACGCGTCTAGATCCACGTCTTCGTCGCTGGAAATGGTGTAGGAGACCTCGC
GCGAGCGGGTCTGGCGCTTGCGGCGGTTGGTACGTGGCATGATGAACCCGCCACCAAGCTCATCA
TCGCTGGACATCGAGTCTGTGGTCATGGTGATGGGGTTCCGATGG
Found at i:113950 original size:6 final size:6
Alignment explanation
Indices: 113941--114031 Score: 134
Period size: 6 Copynumber: 15.7 Consensus size: 6
113931 TTGCATCCGT
* *
113941 TGTTGT TGTTGT TGTTGG TG-T-- TGTTGG TGTTGG TGTTGG TGTTGG
1 TGTTGG TGTTGG TGTTGG TGTTGG TGTTGG TGTTGG TGTTGG TGTTGG
*
113986 TGTTGG TGTTGG TGTTGG TGTTGG TGTTGG TGTTGG TGTTGT TGTT
1 TGTTGG TGTTGG TGTTGG TGTTGG TGTTGG TGTTGG TGTTGG TGTT
114032 TTTGTTGCTG
Statistics
Matches: 80, Mismatches: 2, Indels: 6
0.91 0.02 0.07
Matches are distributed among these distances:
3 2 0.03
4 1 0.01
5 1 0.01
6 76 0.95
ACGTcount: A:0.00, C:0.00, G:0.45, T:0.55
Consensus pattern (6 bp):
TGTTGG
Left flanking sequence: Indices 113441 -- 113940
AATCAAAGAAGATGGGGAAAAAAATCCCCTCAAGGAGGCTACAAAAGCTTGTCGTTAGCGTGGTG
ATACTTGCTCACCACAGCCTCGGTGCTGTTAGTACTTCTGATGGAGTCTCCCGGCTGGGTCATAA
TCCGTTGGCGCGTCGCGCCATGGAGGTGGCTCAGCGTCTGTTGGTCTGGTGACAGGGCTTGTTAC
TGGTGGCGTCGCGACCCACCAGCTACGGGTCCTCGAACAGTCCTGACATGTGCAGTTGCACGCTT
CTACTCGATGGCCGACGGGCCGGGAGGTAGGAGGTGCAATCTAGCGTCAGGATGGGCGGTATCGC
CACAGAACCATCCCGTGGTCGGCGCGGGGAGCTGCAAGCCTCTGGGCTTCGCTTCCTTTGCCATA
TGGGAGACAAGATCAGAAGTGCTAGTGGTGCCACACCCCTTTCACACTTTCAAAAATTGCTTGAA
CTCAACCTTTTGAGAATTATCACTACTGGATGCTTTTGCATCCGT
Right flanking sequence: Indices 114032 -- 114531
TTTGTTGCTGGTCGCTGTTGTAAGGGTTGGATGCCAATGGCTCCTTTTTCCCCCTGTTGGTGGTG
GCAATGGTATCCGATTCGATTCGTTGGATCGGGTGCCATTGGCACCGTTTTTTTCCCCCTGTTGG
TGGTGCCATTGGTATCCAATCCGGGTTTCTATAATTGTATAGTTAAGCACTGGGTGCGCCTTCGG
GGTAGCCTGCATGAGCGGGCTACCCTGAAGCCGTACTGGGGGCTTATATTGTAGTATATAGGATA
TATACAGGTTCGCCATAATCAACACTATCTACGGTATCAATGGTAAAGTCACGTGGTCTGTGTCA
CACGACGTATGAGCCGCATTAGGCTATATAGCTCGTAAAGCGACTAACATAAGGAGTTATGTAAT
GCTCGTAAAGTCTTTAGCAAATTTTGAATGGTCGTCATATAGCTCGTCGTATAGCGGGGTGGTTG
TTTGTTAGAGGGGGCCGTTTTATTGTGGAAATTTGTTAGAGGGGG
Found at i:116102 original size:12 final size:12
Alignment explanation
Indices: 116085--116148 Score: 94
Period size: 12 Copynumber: 5.4 Consensus size: 12
116075 CCCATCTACA
*
116085 CAACCCACCAGC
1 CAACCCACCAAC
*
116097 CAACCCACCAGC
1 CAACCCACCAAC
116109 CAACCCA-CAAC
1 CAACCCACCAAC
*
116120 CAACCCACTAAC
1 CAACCCACCAAC
116132 CAACCCACCAAC
1 CAACCCACCAAC
116144 CAACC
1 CAACC
116149 AACTCATTAA
Statistics
Matches: 48, Mismatches: 3, Indels: 2
0.91 0.06 0.04
Matches are distributed among these distances:
11 10 0.21
12 38 0.79
ACGTcount: A:0.39, C:0.56, G:0.03, T:0.02
Consensus pattern (12 bp):
CAACCCACCAAC
Left flanking sequence: Indices 115585 -- 116084
TAGTCAGGGTAGGATCCCAAAGACACACGACGGATGCCCACAATGAGCTTGAAACCTAGGCCAAG
TAAATCAGACAAGCTACGCTAGTCTGAGAAAAGCATCCTGGACCGGGCTTGGGGCCTTCGTGGTG
AATTTGACTTCTCCGCATAAATTTGCCAACCTGGAGGGACCACAATGCACACTAAACGCGTCGAG
ATGCACCATTCACCCCTGCCCGTTACCAGTAACCCCTACGCAGATTCCATTTGCAGCACGCTTTC
GCCTCTCTCCGCGTTTTTCCACCAGATCCAGTAATTTTTCACTACCTCTAGTCACCACCCTCGCT
TATACCAGCCAACCGCAGCCACCGACGCCAGAACTCCTTACTTTACACAAAGTACGCCCCAGGAG
TCTGCGTGTGACCCCTTCCACCCCAACATTACAGTATCCACCTTCCACTACCAGTAAAACCGTCC
ACCCACTCTCATTAACCACTAATCTCACCAAAAAGCCCATCTACA
Right flanking sequence: Indices 116149 -- 116648
AACTCATTAACCACCCCACGTACCACACCGTCTAGCTACACACCCACCACCTCTCCTACCCCCCT
TCCCCTAATCTCTCTCTCTTCCCCCTCTTCTCGTTCCCATCGTTTATTTACGACGCGGCAGCCAA
AAATCCGTACTGACGCGACCATGGAGCCGTTTGCCGTGAGCGCCCCAGGCAAAGTGATCATCTTT
GGGGAGCACCTGGCGGTGTACTACAAGCCGGCCATCGCCGCCGCGCTCGACGTACGCTGCTACCT
CCTCGCCACCCCGTCGCCCGACCCCGGAGTCGTCCGACTCGAGTTTTCCGACATCAACCTCGTTC
ACCAGTGGCGCCAGAGCGAGCTTCCCTGGGAAGCAGTGGCGCAACACGTGGTCCGTGACGCCGAC
GGGCGGCCCAGCCCCACCGCTGTGCTCGACCCCGCCATCCAGGCCGCCATCCGCCCCTCGATCGC
TACCGAGGAAAACATCCACTTCATCGCCTGCCAGTGCTTTCTCTA
Found at i:116136 original size:4 final size:4
Alignment explanation
Indices: 116085--116151 Score: 55
Period size: 4 Copynumber: 17.0 Consensus size: 4
116075 CCCATCTACA
* * * * * * *
116085 CAAC CCAC CAGC CAAC CCAC CAGC CAAC CCA- CAAC CAAC CCAC TAAC
1 CAAC CAAC CAAC CAAC CAAC CAAC CAAC CAAC CAAC CAAC CAAC CAAC
*
116132 CAAC CCAC CAAC CAAC CAAC
1 CAAC CAAC CAAC CAAC CAAC
116152 TCATTAACCA
Statistics
Matches: 46, Mismatches: 16, Indels: 2
0.72 0.25 0.03
Matches are distributed among these distances:
3 2 0.04
4 44 0.96
ACGTcount: A:0.40, C:0.55, G:0.03, T:0.01
Consensus pattern (4 bp):
CAAC
Left flanking sequence: Indices 115585 -- 116084
TAGTCAGGGTAGGATCCCAAAGACACACGACGGATGCCCACAATGAGCTTGAAACCTAGGCCAAG
TAAATCAGACAAGCTACGCTAGTCTGAGAAAAGCATCCTGGACCGGGCTTGGGGCCTTCGTGGTG
AATTTGACTTCTCCGCATAAATTTGCCAACCTGGAGGGACCACAATGCACACTAAACGCGTCGAG
ATGCACCATTCACCCCTGCCCGTTACCAGTAACCCCTACGCAGATTCCATTTGCAGCACGCTTTC
GCCTCTCTCCGCGTTTTTCCACCAGATCCAGTAATTTTTCACTACCTCTAGTCACCACCCTCGCT
TATACCAGCCAACCGCAGCCACCGACGCCAGAACTCCTTACTTTACACAAAGTACGCCCCAGGAG
TCTGCGTGTGACCCCTTCCACCCCAACATTACAGTATCCACCTTCCACTACCAGTAAAACCGTCC
ACCCACTCTCATTAACCACTAATCTCACCAAAAAGCCCATCTACA
Right flanking sequence: Indices 116152 -- 116651
TCATTAACCACCCCACGTACCACACCGTCTAGCTACACACCCACCACCTCTCCTACCCCCCTTCC
CCTAATCTCTCTCTCTTCCCCCTCTTCTCGTTCCCATCGTTTATTTACGACGCGGCAGCCAAAAA
TCCGTACTGACGCGACCATGGAGCCGTTTGCCGTGAGCGCCCCAGGCAAAGTGATCATCTTTGGG
GAGCACCTGGCGGTGTACTACAAGCCGGCCATCGCCGCCGCGCTCGACGTACGCTGCTACCTCCT
CGCCACCCCGTCGCCCGACCCCGGAGTCGTCCGACTCGAGTTTTCCGACATCAACCTCGTTCACC
AGTGGCGCCAGAGCGAGCTTCCCTGGGAAGCAGTGGCGCAACACGTGGTCCGTGACGCCGACGGG
CGGCCCAGCCCCACCGCTGTGCTCGACCCCGCCATCCAGGCCGCCATCCGCCCCTCGATCGCTAC
CGAGGAAAACATCCACTTCATCGCCTGCCAGTGCTTTCTCTACAT
Found at i:117616 original size:8 final size:8
Alignment explanation
Indices: 117605--117635 Score: 53
Period size: 8 Copynumber: 3.9 Consensus size: 8
117595 GGCAGAGTGG
*
117605 TGGTGTCA
1 TGGTGTAA
117613 TGGTGTAA
1 TGGTGTAA
117621 TGGTGTAA
1 TGGTGTAA
117629 TGGTGTA
1 TGGTGTA
117636 GCATGTTAGC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
8 22 1.00
ACGTcount: A:0.19, C:0.03, G:0.39, T:0.39
Consensus pattern (8 bp):
TGGTGTAA
Left flanking sequence: Indices 117105 -- 117604
GGTGTTGGACGCGATGGGCCACGTGGCCGAGGACGCGTACCACCTCATGACCCAGCCCACGCTTC
TGGCGGCGGACCGACTCAAATTGCGCCAGCTCGTCGACATCAACCACGGGTTGCTTGTGGCGTTG
GGGGTGTCGCATCCCGCGCTCGAGACCGTCAAGAGTATTGGCGACGTGCACGCGATCGGGCTGAC
CAAGCTCACGGGCGCTGGCGGCGGCGGGTGTGCCATCACCCTCATCACCGACGACGCCGACGCCG
CGGCGGTGGCTGCGGCGCGGGAGCGGTTTGCGGCCGAGGGCTACGAGTCGTTTGAGACCAAGTTG
GGCGGGCGTGGTGTGGGCTACTTGGCTGCGACCCCGGAGGCCGTGGCTGGCGGGGCTGTTTTCAC
TGCGGACGCGTTCACGGGGCTTGCCACGAGGGAGGACATCCAGCAGCGGTTGGGCAACTCGCCGC
ACTGGAAATACTGGTAGTGCTAGTATTGTGGTTGTGGCAGAGTGG
Right flanking sequence: Indices 117636 -- 118135
GCATGTTAGCATGATGTATATACACGAATTAATGGATAGAGTAATGAGGAAGGGAGTGTGGAGTG
GAGTGGTGGAGTGGTGGCTGGAGGTGGAGATAATCAATCGATGCATGTAGTGGGAGAGTGGTGTA
GACAAGAATTGGTGGAGACAAGCAGTGGTGAAAATAAGCAGTGTTGGAGACAAGCGGTGTTTTGG
GTACGGGAGGTGATTAATGATGGCGGTGGTTGTCTCTAGTGGGCGTGGTTCTATCCCAATTGGTG
GTGCCAACGGCTATATCGTGGGACTAGTAGCTCTATCGTTGGGTGGCACCAGTAGCTATCTCGCT
CAGTTAGCCCAGTCACTCAATGGTGTAAACCACGCTTGCTTATGGTGTAGAAGCAGTAATTGGCA
TAGTCCGATGAGTAAACTACACTTGGACTGCTCAGAGTGCCCGTTGAACTCTGGAAACTGTACAA
CTTCCACATTGAGGCAATCCAACCATAATTTTCCACGAGCGGTCT
Found at i:117794 original size:16 final size:16
Alignment explanation
Indices: 117757--117820 Score: 65
Period size: 16 Copynumber: 4.0 Consensus size: 16
117747 GTAGTGGGAG
* *
117757 AGTGGTGTAGACAAGA
1 AGTGGTGGAGACAAGC
*
117773 ATTGGTGGAGACAAGC
1 AGTGGTGGAGACAAGC
* * *
117789 AGTGGTGAAAATAAGC
1 AGTGGTGGAGACAAGC
*
117805 AGTGTTGGAGACAAGC
1 AGTGGTGGAGACAAGC
117821 GGTGTTTTGG
Statistics
Matches: 37, Mismatches: 11, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
16 37 1.00
ACGTcount: A:0.36, C:0.09, G:0.36, T:0.19
Consensus pattern (16 bp):
AGTGGTGGAGACAAGC
Left flanking sequence: Indices 117257 -- 117756
AGACCGTCAAGAGTATTGGCGACGTGCACGCGATCGGGCTGACCAAGCTCACGGGCGCTGGCGGC
GGCGGGTGTGCCATCACCCTCATCACCGACGACGCCGACGCCGCGGCGGTGGCTGCGGCGCGGGA
GCGGTTTGCGGCCGAGGGCTACGAGTCGTTTGAGACCAAGTTGGGCGGGCGTGGTGTGGGCTACT
TGGCTGCGACCCCGGAGGCCGTGGCTGGCGGGGCTGTTTTCACTGCGGACGCGTTCACGGGGCTT
GCCACGAGGGAGGACATCCAGCAGCGGTTGGGCAACTCGCCGCACTGGAAATACTGGTAGTGCTA
GTATTGTGGTTGTGGCAGAGTGGTGGTGTCATGGTGTAATGGTGTAATGGTGTAGCATGTTAGCA
TGATGTATATACACGAATTAATGGATAGAGTAATGAGGAAGGGAGTGTGGAGTGGAGTGGTGGAG
TGGTGGCTGGAGGTGGAGATAATCAATCGATGCATGTAGTGGGAG
Right flanking sequence: Indices 117821 -- 118320
GGTGTTTTGGGTACGGGAGGTGATTAATGATGGCGGTGGTTGTCTCTAGTGGGCGTGGTTCTATC
CCAATTGGTGGTGCCAACGGCTATATCGTGGGACTAGTAGCTCTATCGTTGGGTGGCACCAGTAG
CTATCTCGCTCAGTTAGCCCAGTCACTCAATGGTGTAAACCACGCTTGCTTATGGTGTAGAAGCA
GTAATTGGCATAGTCCGATGAGTAAACTACACTTGGACTGCTCAGAGTGCCCGTTGAACTCTGGA
AACTGTACAACTTCCACATTGAGGCAATCCAACCATAATTTTCCACGAGCGGTCTCACCTGTCCA
ACCAGCCCACAGAACAAGCGTTGGGGGGTCTGGGGGGCGCCGCTCGCGGCCCCCCAGTCGTCACC
CACCCAAACCATTCCAGACATCCCCACCCACAAGAGCCCTTCCCATTACCGTCTCTCATCACCTC
TCACATCCTCTCTCTTCTACCTTCTCAAGCTTTATCAACTGTATA
Found at i:117825 original size:16 final size:16
Alignment explanation
Indices: 117778--117826 Score: 53
Period size: 16 Copynumber: 3.1 Consensus size: 16
117768 CAAGAATTGG
*
117778 TGGAGACAAGCAGTGG
1 TGGAGACAAGCAGTGT
* * *
117794 TGAAAATAAGCAGTGT
1 TGGAGACAAGCAGTGT
*
117810 TGGAGACAAGCGGTGT
1 TGGAGACAAGCAGTGT
117826 T
1 T
117827 TTGGGTACGG
Statistics
Matches: 25, Mismatches: 8, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
16 25 1.00
ACGTcount: A:0.33, C:0.10, G:0.37, T:0.20
Consensus pattern (16 bp):
TGGAGACAAGCAGTGT
Left flanking sequence: Indices 117278 -- 117777
ACGTGCACGCGATCGGGCTGACCAAGCTCACGGGCGCTGGCGGCGGCGGGTGTGCCATCACCCTC
ATCACCGACGACGCCGACGCCGCGGCGGTGGCTGCGGCGCGGGAGCGGTTTGCGGCCGAGGGCTA
CGAGTCGTTTGAGACCAAGTTGGGCGGGCGTGGTGTGGGCTACTTGGCTGCGACCCCGGAGGCCG
TGGCTGGCGGGGCTGTTTTCACTGCGGACGCGTTCACGGGGCTTGCCACGAGGGAGGACATCCAG
CAGCGGTTGGGCAACTCGCCGCACTGGAAATACTGGTAGTGCTAGTATTGTGGTTGTGGCAGAGT
GGTGGTGTCATGGTGTAATGGTGTAATGGTGTAGCATGTTAGCATGATGTATATACACGAATTAA
TGGATAGAGTAATGAGGAAGGGAGTGTGGAGTGGAGTGGTGGAGTGGTGGCTGGAGGTGGAGATA
ATCAATCGATGCATGTAGTGGGAGAGTGGTGTAGACAAGAATTGG
Right flanking sequence: Indices 117827 -- 118326
TTGGGTACGGGAGGTGATTAATGATGGCGGTGGTTGTCTCTAGTGGGCGTGGTTCTATCCCAATT
GGTGGTGCCAACGGCTATATCGTGGGACTAGTAGCTCTATCGTTGGGTGGCACCAGTAGCTATCT
CGCTCAGTTAGCCCAGTCACTCAATGGTGTAAACCACGCTTGCTTATGGTGTAGAAGCAGTAATT
GGCATAGTCCGATGAGTAAACTACACTTGGACTGCTCAGAGTGCCCGTTGAACTCTGGAAACTGT
ACAACTTCCACATTGAGGCAATCCAACCATAATTTTCCACGAGCGGTCTCACCTGTCCAACCAGC
CCACAGAACAAGCGTTGGGGGGTCTGGGGGGCGCCGCTCGCGGCCCCCCAGTCGTCACCCACCCA
AACCATTCCAGACATCCCCACCCACAAGAGCCCTTCCCATTACCGTCTCTCATCACCTCTCACAT
CCTCTCTCTTCTACCTTCTCAAGCTTTATCAACTGTATAGTCTAT
Found at i:119809 original size:13 final size:13
Alignment explanation
Indices: 119791--119821 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
119781 GAAGGGCTGT
119791 GAGAGACTGTGAC
1 GAGAGACTGTGAC
*
119804 GAGAGACTGTGAT
1 GAGAGACTGTGAC
119817 GAGAG
1 GAGAG
119822 TGATTAGGCG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.32, C:0.10, G:0.42, T:0.16
Consensus pattern (13 bp):
GAGAGACTGTGAC
Left flanking sequence: Indices 119291 -- 119790
AGCGTGATTGCGGAAGCGGCACGGGGCCAGGCACAGTGGACGCCATCGGTGGTGAAAATATGGGA
TGCGGCTGTAAGTGGTGCGAGATCGTCTAACGATGCGAGTCGCGGTCACCAGAGCCATTGGCGTG
GATATCGTGCGAGTTTCGCGGTTCGAGCGGATGCTAGCGCGGGGCGGTGGGTTTGGGGCCCGTCT
CAGGGACCGGGTGCTCCACCCGCGCGAGCACGGGTTCACGGGGGCCCAGGCGGTGGCGGGTCTGT
GGGCACTCAAGGAGGCGGTGTTCAAGACGTTGGACACCGCGGACCAGCGGCGGTTCCGGTTCAAT
GCGTGGTACAAGTGCTACGACGAGGGGAAGCCCGGGATTCGGAGCGACGAGTACGGGAAGGACGA
CGTGTTTTTGGCGAGCGTGAGCCATGACGGGGACGTGTTGGTGGCGACGGTGCTTCGGCAGGTGA
TGGTGGATGTGGGAGGAAAGGGGGGAGAGGAGAGGGAAGGGCTGT
Right flanking sequence: Indices 119822 -- 120321
TGATTAGGCGACTGTTTAGTTTTCACTCTCTTGTTGAGTACGTATCACCCCATGTCACCCCACGT
CACCTCTAGCTGTGATTAGGGCTACGATCCAAGACACCAATTAGGCATCGTCAGATCATCGATGA
CAATAGGTGAGAATGGGTCCACGTTTTGCCAAGCCGATTGACAACATCCTGGCTCGATTTCACTA
TCTCACCACCACCACCACCAAGCCAGCCAGAGACGAGTGGTTAAACAATACATAGACAAACTCAA
AGCTCAGAATAACCACAATCTAGACTGTAGCGAGATCAATTACGAATTACAATTGCCCGGCGCGG
ATCATTGAGCAACTTCCCATGAGTTCAACTCGTCACACCACACCACTAACCAATACGGAAGTGTA
CAGAACAAGTAGACTATCCACACAGAGAACATAGACACAACACGAGCACACAGAAAACATAGACA
CAACACCATAACTCTCCAGCCCGAATCACCAACCTTTCGAATTAC
Found at i:123656 original size:40 final size:40
Alignment explanation
Indices: 123605--123684 Score: 108
Period size: 41 Copynumber: 2.0 Consensus size: 40
123595 GATGTGAGGT
* *
123605 GGGTAGAACA-GGGTGGTTCTTGCGAGTCGGTAAGGTGGTG
1 GGGTAGAACAGGGGTAGTTCTTGCGAGTCGG-AAGCTGGTG
* *
123645 GGGTAGGACAGGGGTAGTTCTTGTGAGTCGGAAGCTGGTG
1 GGGTAGAACAGGGGTAGTTCTTGCGAGTCGGAAGCTGGTG
123685 TGTTGCTACG
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
40 17 0.49
41 18 0.51
ACGTcount: A:0.17, C:0.10, G:0.47, T:0.25
Consensus pattern (40 bp):
GGGTAGAACAGGGGTAGTTCTTGCGAGTCGGAAGCTGGTG
Left flanking sequence: Indices 123105 -- 123604
GCCTGATCAACGCGCTGTTTGTGGTGCAGTTCTTCGACAACGTGCAACAGGGGGTGCTTGCGCGC
ATCCTCACGGTGTTTGTCATCCCCACGGTGCTGGCGTTGGCCAACTTGCAAGACAAAAAGGTAGC
CAACATCGGGTTGTCCGAGCTTTTGTTGGCGCCCGTGCTGGACGAGCTGGCCCGCGAGCTCACCG
AGGCGGTGTGTGCCAACATGGCTGGGTACGAGGGCATCTCCAAGACCGCAGGCACCACTGCGGGC
ACCACGTTCACCAACGCTCCGTTGAACGAGTTGGACTTGGAGGTGATGGCGTTTGGGCTGACGTT
CTCTCCCATTGTTGCCATCCAGAACAAACCGTTTGACCCCGTGGCATCGATCAAGGCCAACGACT
TTGCGCTGATCGAGCGGGTGGTGTTTGCCAACGTGGCGCGGGTGCGTCCGGCGGTGGCCCAGCAG
TTGTCGCAGGAGACGAAGACGATGGTGCAAAACCGGATGTGAGGT
Right flanking sequence: Indices 123685 -- 124184
TGTTGCTACGTTGGTGCGTTAAAAGCTAGTGAGCTGGTACACTATGTTGACAAGCTTGTATGCTA
GCAAAAAGAGCTTGTAAGCTAGTGTGCTGCTAAACTAGTGTGCTGGTAACCTAACCTAGTTACCG
GCAAGCTATCTCCCAGGCTAGCTTCACCTGACAACTCTACCTCGTTGTAAATTATAATACATGGC
TAACTGGAGTCCCAAAAGTATGTAAGAATTGAATATATAATACAGGCTACAGCTCAACTTTAGCG
GCCTCCTTTTCCTGGCGTTCCTTCTCGGCGATCTCCGCTGCCGTCAAGAACCGTCCGCCCTGTCC
TCGTGGCCGCCGCATCGCGTGCTTGTGTCGAGACTCGTGCAAGTAGGGCTTTCGAGTACGGGCGA
TTTTGAGGTTCTCCTCGAGCTTGGCCCGGGCAATGCGCCGCTTGAGAATGCGGTGGTACTGTTTG
GCGTTGACGTAGAACGGCTGTTCGGCCGCGGGGGGGTCCGGTTCG
Found at i:136165 original size:14 final size:14
Alignment explanation
Indices: 136142--136194 Score: 90
Period size: 14 Copynumber: 3.9 Consensus size: 14
136132 GAAGAATGGG
136142 GGGA-AACAGGGGT
1 GGGAGAACAGGGGT
136155 GGGAGAACAGGGGT
1 GGGAGAACAGGGGT
*
136169 AGGAGAACAGGGGT
1 GGGAGAACAGGGGT
136183 GGGAGAACAGGG
1 GGGAGAACAGGG
136195 TTGAGTTGAG
Statistics
Matches: 37, Mismatches: 2, Indels: 1
0.93 0.05 0.03
Matches are distributed among these distances:
13 4 0.11
14 33 0.89
ACGTcount: A:0.32, C:0.08, G:0.55, T:0.06
Consensus pattern (14 bp):
GGGAGAACAGGGGT
Left flanking sequence: Indices 135642 -- 136141
ACCCGGCGGCCAGCGACGCCAACCCAGCGGCGGTGGGGAAGTTGTTCTCGGAAACGATGCGGAGC
CCGTACTCGGACACCTTCTCACACCCCTCGGCCGCCTCCTTCTGGCGTCTGAGCGCGCGGAGGTC
GCCCAAGCACGCCTGGGTCCGGGCCAGGGTGAGCGGGTGCTCCTCGCCGTTGATGAGCAACATGT
CGTTGGAGTACTCCGGCAGCGCTGCCACCGAGGTCAACGTGCGCAAGTCGTTCTGCGAGAGGGTG
ACCGAGATCAGGTTGTTGGTGGGGAGGTTGAGCTTGGCGTCACGCTTGCCCCAGTACTTGAGGGT
CTGAGGTTAGTAGGAACAGGGGGAGGGGGGTTGGGAGGAGACGTGTAGCAGGTCTTTGTAGTGTG
GTTACTTACTGCGATGTTCACGGGCGCGGTGACCGAGGCGGTGTGGGTAGTCATTGGTGTCCTGG
CGCGTTGAATTTTTCAGAAAAGTGAGAACGAGTGGGAAGAATGGG
Right flanking sequence: Indices 136195 -- 136694
TTGAGTTGAGAGTAGATCGGAAGACATTCGACACGTGGTACACGTGGAACACGTAGGGGTGAACC
ATTGAGACTGGACTGATGAGACCGTTCTTACGCACTGTCGCGATACGACGGTATACGACAGTGGT
TGCATTCACTTGAGTAACAGAAGGAAATCATTTACAAAGTTGTAGACAGCAAGCACACAAACAAA
AGAATCGCTTTAACAGAGCCCATTCGTTTCAATTCTAAACCAACCTTATTCTCGCCAGCCGCACG
GCTGTCAACTAGTCCAATGGAAATTACTCGAACTAGACCAGATCAATTTCACCTGGACGCCAATA
CTGAGCGACTCAATTGACAATGCATCTTGGCATTTTCTATATGTAAGCTTTCCAAGATAATTGAA
GAGACAATCGATTGCCTCCATACTACCGATATACTTTAATCTCCAATCTTCACTTGCATCTTCTA
AACACACCACCCAATACACCACCCATTATACCACTCCATTCACAA
Found at i:141990 original size:22 final size:22
Alignment explanation
Indices: 141962--142033 Score: 99
Period size: 22 Copynumber: 3.3 Consensus size: 22
141952 CGGGCCGTAA
*
141962 TGGAGGTGGATTGAGCACGTCC
1 TGGAGGTGGATTGAGTACGTCC
* * *
141984 TGGAGGTAGAGTGAATACGTCC
1 TGGAGGTGGATTGAGTACGTCC
*
142006 TGGAGGTGAATTGAGTACGTCC
1 TGGAGGTGGATTGAGTACGTCC
142028 TGGAGG
1 TGGAGG
142034 ATACTACCAT
Statistics
Matches: 42, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
22 42 1.00
ACGTcount: A:0.22, C:0.14, G:0.40, T:0.24
Consensus pattern (22 bp):
TGGAGGTGGATTGAGTACGTCC
Left flanking sequence: Indices 141462 -- 141961
TACCCCGAGCGGGCGGCGCGGCTCGTGGACATTCTCGAGGTGGACCGCACGTGGTCCACCATGAG
CATTTCCGACGGGCAGCGCATGCGGGTGTTGCTTGCCATCGGGCTCTTGCGGCCCCATTTTTCCC
TCCTTTTGTTGGACGAGGCGTCGCTCTACTTGGACATTATCGCGCGAGGGAACCTCCTCGAGTTC
CTCAAGGAGGAGGCCGAGACCCGTGACTGCTGTGTGGTGTACGCCACCCACATTTTCGATGGCAT
GGCGCTGAGCTGGTGCGACCGCATCATCCACCTCGACAAGGGCCGGGTGGCTGACGATATCAACA
TGGCGGACATCGAGTTCGGCGGCGACCAGGTGGAGGAGGGGACCCCGCTCCGGGTGCCGCGTTCC
GAGAGCATCCACCCGTTGGCGATGCACTGGTTGCGCCGCGACACCTCAAGAAAGTAGCATAATAA
AGGAATCCCACAGAATGGAGGACTGAGTACGCGCTCGGGCCGTAA
Right flanking sequence: Indices 142034 -- 142533
ATACTACCATCCAATGGTCGCGCCCCACTGTCGCCATAACCTACTACTCTCGTAACTTGATTTTA
ACTGAATACATAACTATGGTGACTATGGTATCATATGCAAAAGACTAAAGACAGGCACAGCCTGT
GGCCCGGGGGCACATGCAAACCGGTGGAACCGGCTAGATCATCGAGAACTGGCGCTCCATCTCGA
GAAACTGGGTGAGCTCGCGCTGGTGGTGTAGCTGCTTCGTGAGAAGCCAGTTGTGGAAGTGGAGC
GCCACCCCGGGGTTTTTTGGCGGCGGCTTCAACTCAAGCTTGCGCCGGATGTTGTTGGCCTTGAG
CGGCGTCGTGGCAACGCGCTTGTTCATGGGTGCAACGGATCACTGGGCTAAACTGTATCGCGCTT
GATAGATGGTTTTTTGTTTACGCGCGACCAGATGACGCACAATAGAGCCTGAAATAGTAAGTATG
CACGGTGCGAGTGGGTGAAAACATTGCTATCGCGGGTCGCGGTGG
Found at i:143151 original size:13 final size:12
Alignment explanation
Indices: 143133--143169 Score: 56
Period size: 13 Copynumber: 2.9 Consensus size: 12
143123 AGTACTTTCT
143133 TCTACTACATTCC
1 TCTACTACATT-C
143146 TCTACTACATTC
1 TCTACTACATTC
143158 TCCTACTACATT
1 T-CTACTACATT
143170 TTCTTCATTA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
12 2 0.09
13 21 0.91
ACGTcount: A:0.24, C:0.35, G:0.00, T:0.41
Consensus pattern (12 bp):
TCTACTACATTC
Left flanking sequence: Indices 142633 -- 143132
GTTGTGGTGTAACAATGGTGGGATTACGAAATAAAAGAACGGGGGAGATTAACGAGAGGTGGGGA
CACGCTTGCACGCCTCGCCTATGGTTGCCTCCCGCTGTCTGAGCTGTCTGTCGCTAGTCTCGTCT
AATTGACGGGCTGCCCGTTTGAGACACGGTTACGAACACTGGGCCACGCCAGGGTCGCCACACAC
CCCTAGAGCCGTGCCATTGACCGCGGTCGCCACGCGTTTTGTGGAGCCACAGGGGACCCTGTGGA
TGCGGTGCGTTTTGTGGCCGCCATCGCCATCGCCAGGCCCTTTTGTGACGCCTGTCTCTGTGGTG
GTGCATCACGTGCTCGTCGCTACATCACGCGATTTACCCATTGGGAGTATTCGTAAATAGTGGTA
ATGACACTACGATTTTGGGATATTTGCATCGCACGACCGGGAGGCAACCGCCTCCAACAATTACT
TAAAGTATTCCACTTCAACCATTTCAATACTCTAGAGTACTTTCT
Right flanking sequence: Indices 143170 -- 143669
TTCTTCATTACACCAAATACCTTTTTTATCACCACTTCATTCTCTCATTACACCTACCTTCACCT
CTTCATTCTCCTAAAAACTCCTACCTTCTCATACTCCTACCTATCATACTCCCTAAATACCAAGC
TCCTTCGTGAACGCCTCGGCGTTGGGCTCGCGGCCCAACAACTCAATCAAGTTGTCCATGGTGTC
CCGGCTACCACCGCGTCTCAAAATGGTGTCGCGGTACCGCACCCCGTTCTCGACATTCAGCGGGT
CGTCGGCAAAAAGCGAAAAGTAGATGTCCAGGGCAAACACGCTCAGGTACAAGTAGCCGTAGTAC
CCAGAGCAGTAGCCAAGCATGTGGGCAAACGACGCGTACCCGGGAAGCCGCTCGCCATCCGCACT
GATGTGGGTAAGCTCCTCGCGGTACTCGTTCCACAACTTCAACATGTCCAACAGGTCGATCGCCT
GCTGCGACGCACAGGTGTGGAGCTTCATGTCAAATGTGGCAAAGT
Found at i:143283 original size:15 final size:16
Alignment explanation
Indices: 143251--143286 Score: 56
Period size: 15 Copynumber: 2.3 Consensus size: 16
143241 TCTCCTAAAA
*
143251 ACTCCTACCTTCTCAT
1 ACTCCTACCTTATCAT
143267 ACTCCTACC-TATCAT
1 ACTCCTACCTTATCAT
143282 ACTCC
1 ACTCC
143287 CTAAATACCA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 10 0.53
16 9 0.47
ACGTcount: A:0.22, C:0.44, G:0.00, T:0.33
Consensus pattern (16 bp):
ACTCCTACCTTATCAT
Left flanking sequence: Indices 142751 -- 143250
CTAGTCTCGTCTAATTGACGGGCTGCCCGTTTGAGACACGGTTACGAACACTGGGCCACGCCAGG
GTCGCCACACACCCCTAGAGCCGTGCCATTGACCGCGGTCGCCACGCGTTTTGTGGAGCCACAGG
GGACCCTGTGGATGCGGTGCGTTTTGTGGCCGCCATCGCCATCGCCAGGCCCTTTTGTGACGCCT
GTCTCTGTGGTGGTGCATCACGTGCTCGTCGCTACATCACGCGATTTACCCATTGGGAGTATTCG
TAAATAGTGGTAATGACACTACGATTTTGGGATATTTGCATCGCACGACCGGGAGGCAACCGCCT
CCAACAATTACTTAAAGTATTCCACTTCAACCATTTCAATACTCTAGAGTACTTTCTTCTACTAC
ATTCCTCTACTACATTCTCCTACTACATTTTCTTCATTACACCAAATACCTTTTTTATCACCACT
TCATTCTCTCATTACACCTACCTTCACCTCTTCATTCTCCTAAAA
Right flanking sequence: Indices 143287 -- 143786
CTAAATACCAAGCTCCTTCGTGAACGCCTCGGCGTTGGGCTCGCGGCCCAACAACTCAATCAAGT
TGTCCATGGTGTCCCGGCTACCACCGCGTCTCAAAATGGTGTCGCGGTACCGCACCCCGTTCTCG
ACATTCAGCGGGTCGTCGGCAAAAAGCGAAAAGTAGATGTCCAGGGCAAACACGCTCAGGTACAA
GTAGCCGTAGTACCCAGAGCAGTAGCCAAGCATGTGGGCAAACGACGCGTACCCGGGAAGCCGCT
CGCCATCCGCACTGATGTGGGTAAGCTCCTCGCGGTACTCGTTCCACAACTTCAACATGTCCAAC
AGGTCGATCGCCTGCTGCGACGCACAGGTGTGGAGCTTCATGTCAAATGTGGCAAAGTGCAACTG
GCGCAAGTTGAACAGCGCCTGGTTGACGTTTTTGGTGCGGATCAAGTCGTCGATCAAGTTGTCGG
GCAACGGCTCCCCCGTCTGGTAGTGCTTGGACAACTTCTTGAGCT
Found at i:148372 original size:15 final size:15
Alignment explanation
Indices: 148352--148406 Score: 83
Period size: 15 Copynumber: 3.7 Consensus size: 15
148342 TATCACATTT
* * *
148352 ACCACCCACTGCTAC
1 ACCACCTACTACTTC
148367 ACCACCTACTACTTC
1 ACCACCTACTACTTC
148382 ACCACCTACTACTTC
1 ACCACCTACTACTTC
148397 ACCACCTACT
1 ACCACCTACT
148407 GCCGGACCAT
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
15 37 1.00
ACGTcount: A:0.27, C:0.49, G:0.02, T:0.22
Consensus pattern (15 bp):
ACCACCTACTACTTC
Left flanking sequence: Indices 147852 -- 148351
GAGGTACTACTGATTGAATTGGGTGAAATAGTCGTGGTTAATAAACCGGTGGAAGGTCAAATATT
CCTGGTGTATGGTCAGCCATGGTTCCGGCTGGACACAGTTCACCAGTTGCAAACACCCCGAGGGT
GCAACAAGCAGACATTCCCCACCTGGCGGTTTCCCGTGCTACATCCTCTCTAATACCCCGGGATC
ATCTCTACCCTGGGCATTGCAACCTCCTCAAAGCCGGTTTGCAGCCGTGGTTATATGCAGGCCGC
TAACCTCAGAGAAAGATGGTCCCAACGTATGGCCCATTGGAGGGTTCTACAAAGAAATAAAGTCT
GTGAACCTTTTGATTTGCCCGCCATAAACCCACTATTGCTTTACTTTCTTTGTTGTAGCCCCATT
TTTAGTGTACTTTCCACCATCACAAGTATCAACCTCGCTAAAAACCACCATGACGTAACCAAACA
CCTGGACCCGTCAAAAACTCCAAAGCCCCACCTAATATCACATTT
Right flanking sequence: Indices 148407 -- 148906
GCCGGACCATCTTCTAACATATTCCCTCTGACACCCTCCAGATCACCTTCTGCTGGCACTCGCAA
CCTCGAAAGCCTGTAAGTAGCCCAACTTTACCACCACCTTCACCTCTTTAACGCTTTTACCACCT
TACCAACGTACCTCCTATACCTTACTACCTATGCTACCATACTACCATTTACTCCCCACTACCAC
TTCCGACTCCATCTTTTCGAGATCATCATTCAACCCTATGCATTTGCAGCCAAGTCTGTACATGG
GTAATATCCACATTCACCACCCTGCCACCTTTACCAGCTACTACCCCTACCACCTACCACTAGCC
CTACCCCTAACACCACCAATCACTACCCCTACTTCTACCCCGAACACCACTCCTCTTCCTTCCCA
CCACCCCTACCCGCACGCCACCTTACATCATTGCGCTCACCACCCCTCCACCCACCCAACCACCT
CCCTCGCCACAAACCAACCACCCCTCTAGCTTCTCTCCCCCACCC
Found at i:148959 original size:14 final size:14
Alignment explanation
Indices: 148940--148973 Score: 59
Period size: 14 Copynumber: 2.4 Consensus size: 14
148930 GCTTCCCGCA
*
148940 CCACCCACTTCTTC
1 CCACCCACTTCCTC
148954 CCACCCACTTCCTC
1 CCACCCACTTCCTC
148968 CCACCC
1 CCACCC
148974 TTCCCGGTCG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.15, C:0.65, G:0.00, T:0.21
Consensus pattern (14 bp):
CCACCCACTTCCTC
Left flanking sequence: Indices 148440 -- 148939
CCCTCCAGATCACCTTCTGCTGGCACTCGCAACCTCGAAAGCCTGTAAGTAGCCCAACTTTACCA
CCACCTTCACCTCTTTAACGCTTTTACCACCTTACCAACGTACCTCCTATACCTTACTACCTATG
CTACCATACTACCATTTACTCCCCACTACCACTTCCGACTCCATCTTTTCGAGATCATCATTCAA
CCCTATGCATTTGCAGCCAAGTCTGTACATGGGTAATATCCACATTCACCACCCTGCCACCTTTA
CCAGCTACTACCCCTACCACCTACCACTAGCCCTACCCCTAACACCACCAATCACTACCCCTACT
TCTACCCCGAACACCACTCCTCTTCCTTCCCACCACCCCTACCCGCACGCCACCTTACATCATTG
CGCTCACCACCCCTCCACCCACCCAACCACCTCCCTCGCCACAAACCAACCACCCCTCTAGCTTC
TCTCCCCCACCCCGCTGCCATTGACCCCACCCACTGCTTCCCGCA
Right flanking sequence: Indices 148974 -- 149473
TTCCCGGTCGTGTCCGTCCCAACGTCCAGAAATATTTTCGCCAACCGAAAAAACCCTAGACCCTA
GCTATCCGGTAGACCAGCGTGCCCACGAACCCACGCCTCTACCCCCATCAATCGTGTCGACCGGA
GACCCCAGCCCCTTGGGCCGCGACAGAGAATTTACCAAAGTTGTGCTCTACCAGCTTGCCATTGT
GTTAACCACAGTCACCCAAGCCACCCTCGACAGCCACACCGCCCATCTTCGCCACTTGGTCGCGA
AATACGCCACCCCTGACTTGGTCGCCACCGTCTTTGCCCAAGTCCTCCCCCAGCTCTCGCTAGTT
TCCCCCAGCGACTCCGCCGCGCTCGTCGACCACCTCTGCCAGGACCAGCTCCGCTTGGTAGCCGA
AGACCTCGTCTTTTTCGACCCCCTCGTCTCGGCCCTCGCCACCTTCTTTGCGGCCCACCCCTCCG
TCAGCGTCGTCGACTTTAGCTCCCGCTACTGCTCCGACCCCGTGC
Found at i:155420 original size:11 final size:11
Alignment explanation
Indices: 155401--155510 Score: 85
Period size: 11 Copynumber: 9.7 Consensus size: 11
155391 ATTTCTATTC
155401 AGTCTACTGAG
1 AGTCTACTGAG
*
155412 AGTCCACTGAG
1 AGTCTACTGAG
*
155423 AGTCAACTGAG
1 AGTCTACTGAG
*
155434 AGTCTACTCAG
1 AGTCTACTGAG
* * *
155445 AGTTTGTATTCAG
1 AG--TCTACTGAG
*
155458 AGTCTACTCAG
1 AGTCTACTGAG
* *
155469 ACTCTACTCAG
1 AGTCTACTGAG
*
155480 ATTCTACTGAG
1 AGTCTACTGAG
* *
155491 AGTCTAATCAG
1 AGTCTACTGAG
155502 AGTTCTACT
1 AG-TCTACT
155511 CAGCCTCTAC
Statistics
Matches: 81, Mismatches: 15, Indels: 5
0.80 0.15 0.05
Matches are distributed among these distances:
11 67 0.83
12 5 0.06
13 9 0.11
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.30
Consensus pattern (11 bp):
AGTCTACTGAG
Left flanking sequence: Indices 154901 -- 155400
ACTTGATGAACTACGGCGACTCCGAGTTCCGGTTCCACGCGGTCAACGCCATCGCCAACCAGTTG
CGGTACCCCAACGCCCATACCCACTGGTTTGTCGGGATCATTCTCTACTTTTTCCTGTCGCACCT
GATCTGGTCGTCGCCTGAGATCCGTGCGTTTACCCAGGAGATCATCACCCGGGTGCTTTTGGAGC
GGCGCATCGCGGCCAAGCCGCACCCGTGGGGGCTTACCATTGTGTTTACCGAGCTTGTGAAAAAC
TCCGACTTTGGGTTCTTTGACTTGCCGTTTGTCAAGCAGGCGCTGCCGGACTTGCGGGCGATTTT
CGACGCGTTGGCGGTCAATGTCAAGGGCTCGAGCCCGGGCGAGGAAACGCTGTGAGTGTATATTA
GTGTATCATAGAATAAAGAGGTAGTGAAAGTGTGAAAGGGGTGTGAAAGGGGTAGTGTGGAGTCC
TGGTGGGGCAGGGCTGTTTGGCTGGAGTGGTGAGTATTTCTATTC
Right flanking sequence: Indices 155511 -- 156010
CAGCCTCTACTCGGACTTTCTACTCATAGTCTCTAAACAGAGTTCCTGTCGTCTCTATTCAGAGT
CTCTATCGTCTCTATTCAGAGTTTGTATCTATCGTCTCCATTTGGAGTCTACTGTTCGTTGACCG
TTTGTGTCATGTTCCATTTTTAGTTAAGACCATTCAGCCGACCGTTTAGTCGACCATTTTAGTCG
ACCATTTTAGTCTCGCGTGCGACCAGTGACCCACCACGACAACAATGGGCTAAACAAAAGACCAC
CTCAACGTAAAACACTCTCAAACCACTACTCCTATACCCACTTCTCATACTCGTTCCCCTTCCCC
ACTCACATATTTTTCGCCGCGCATCGATCACCACCTATGCTTTCGTGGTTGGACTTCAACGGGTA
CACCATCCTCGTGTTGGTGTTTGCGGTGCTAGTCACCAAGCAGATCGTCAATGCCATCAGCAAGA
GTGTGCTCCAGCAGTGGGGCTGGCAGGTGTACATGGCAGTGGGCC
Found at i:155485 original size:22 final size:23
Alignment explanation
Indices: 155460--155536 Score: 84
Period size: 22 Copynumber: 3.3 Consensus size: 23
155450 GTATTCAGAG
155460 TCTACTCAGACTCTACTCAGA-T
1 TCTACTCAGACTCTACTCAGACT
* * * *
155482 TCTACTGAGAGTCTAATCAGAGT
1 TCTACTCAGACTCTACTCAGACT
* *
155505 TCTACTCAGCCTCTACTCGGACTT
1 TCTACTCAGACTCTACTCAGAC-T
155529 TCTACTCA
1 TCTACTCA
155537 TAGTCTCTAA
Statistics
Matches: 44, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
22 18 0.41
23 17 0.39
24 9 0.20
ACGTcount: A:0.25, C:0.30, G:0.13, T:0.32
Consensus pattern (23 bp):
TCTACTCAGACTCTACTCAGACT
Left flanking sequence: Indices 154960 -- 155459
CAGTTGCGGTACCCCAACGCCCATACCCACTGGTTTGTCGGGATCATTCTCTACTTTTTCCTGTC
GCACCTGATCTGGTCGTCGCCTGAGATCCGTGCGTTTACCCAGGAGATCATCACCCGGGTGCTTT
TGGAGCGGCGCATCGCGGCCAAGCCGCACCCGTGGGGGCTTACCATTGTGTTTACCGAGCTTGTG
AAAAACTCCGACTTTGGGTTCTTTGACTTGCCGTTTGTCAAGCAGGCGCTGCCGGACTTGCGGGC
GATTTTCGACGCGTTGGCGGTCAATGTCAAGGGCTCGAGCCCGGGCGAGGAAACGCTGTGAGTGT
ATATTAGTGTATCATAGAATAAAGAGGTAGTGAAAGTGTGAAAGGGGTGTGAAAGGGGTAGTGTG
GAGTCCTGGTGGGGCAGGGCTGTTTGGCTGGAGTGGTGAGTATTTCTATTCAGTCTACTGAGAGT
CCACTGAGAGTCAACTGAGAGTCTACTCAGAGTTTGTATTCAGAG
Right flanking sequence: Indices 155537 -- 156036
TAGTCTCTAAACAGAGTTCCTGTCGTCTCTATTCAGAGTCTCTATCGTCTCTATTCAGAGTTTGT
ATCTATCGTCTCCATTTGGAGTCTACTGTTCGTTGACCGTTTGTGTCATGTTCCATTTTTAGTTA
AGACCATTCAGCCGACCGTTTAGTCGACCATTTTAGTCGACCATTTTAGTCTCGCGTGCGACCAG
TGACCCACCACGACAACAATGGGCTAAACAAAAGACCACCTCAACGTAAAACACTCTCAAACCAC
TACTCCTATACCCACTTCTCATACTCGTTCCCCTTCCCCACTCACATATTTTTCGCCGCGCATCG
ATCACCACCTATGCTTTCGTGGTTGGACTTCAACGGGTACACCATCCTCGTGTTGGTGTTTGCGG
TGCTAGTCACCAAGCAGATCGTCAATGCCATCAGCAAGAGTGTGCTCCAGCAGTGGGGCTGGCAG
GTGTACATGGCAGTGGGCCCCAAGCTCGGGGTCAACCAGGCGTTC
Found at i:155567 original size:22 final size:23
Alignment explanation
Indices: 155539--155598 Score: 79
Period size: 22 Copynumber: 2.7 Consensus size: 23
155529 TCTACTCATA
** *
155539 GTCTCTAAACAGAGTTC-CTGTC
1 GTCTCTATTCAGAGTTCTCTATC
155561 GTCTCTATTCAGAG-TCTCTATC
1 GTCTCTATTCAGAGTTCTCTATC
155583 GTCTCTATTCAGAGTT
1 GTCTCTATTCAGAGTT
155599 TGTATCTATC
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
21 2 0.06
22 30 0.91
23 1 0.03
ACGTcount: A:0.20, C:0.25, G:0.17, T:0.38
Consensus pattern (23 bp):
GTCTCTATTCAGAGTTCTCTATC
Left flanking sequence: Indices 155039 -- 155538
CGTCGCCTGAGATCCGTGCGTTTACCCAGGAGATCATCACCCGGGTGCTTTTGGAGCGGCGCATC
GCGGCCAAGCCGCACCCGTGGGGGCTTACCATTGTGTTTACCGAGCTTGTGAAAAACTCCGACTT
TGGGTTCTTTGACTTGCCGTTTGTCAAGCAGGCGCTGCCGGACTTGCGGGCGATTTTCGACGCGT
TGGCGGTCAATGTCAAGGGCTCGAGCCCGGGCGAGGAAACGCTGTGAGTGTATATTAGTGTATCA
TAGAATAAAGAGGTAGTGAAAGTGTGAAAGGGGTGTGAAAGGGGTAGTGTGGAGTCCTGGTGGGG
CAGGGCTGTTTGGCTGGAGTGGTGAGTATTTCTATTCAGTCTACTGAGAGTCCACTGAGAGTCAA
CTGAGAGTCTACTCAGAGTTTGTATTCAGAGTCTACTCAGACTCTACTCAGATTCTACTGAGAGT
CTAATCAGAGTTCTACTCAGCCTCTACTCGGACTTTCTACTCATA
Right flanking sequence: Indices 155599 -- 156098
TGTATCTATCGTCTCCATTTGGAGTCTACTGTTCGTTGACCGTTTGTGTCATGTTCCATTTTTAG
TTAAGACCATTCAGCCGACCGTTTAGTCGACCATTTTAGTCGACCATTTTAGTCTCGCGTGCGAC
CAGTGACCCACCACGACAACAATGGGCTAAACAAAAGACCACCTCAACGTAAAACACTCTCAAAC
CACTACTCCTATACCCACTTCTCATACTCGTTCCCCTTCCCCACTCACATATTTTTCGCCGCGCA
TCGATCACCACCTATGCTTTCGTGGTTGGACTTCAACGGGTACACCATCCTCGTGTTGGTGTTTG
CGGTGCTAGTCACCAAGCAGATCGTCAATGCCATCAGCAAGAGTGTGCTCCAGCAGTGGGGCTGG
CAGGTGTACATGGCAGTGGGCCCCAAGCTCGGGGTCAACCAGGCGTTCGCCGAGTACAACGACAA
GCGCCGGCAATTGTGGCAGCTCAACAAGGAAAAGCGGGCGATCTC
Found at i:155694 original size:12 final size:13
Alignment explanation
Indices: 155679--155717 Score: 53
Period size: 13 Copynumber: 3.1 Consensus size: 13
155669 ACCATTCAGC
155679 CGACC-GTTTAGT
1 CGACCAGTTTAGT
*
155691 CGACCATTTTAGT
1 CGACCAGTTTAGT
*
155704 CGACCATTTTAGT
1 CGACCAGTTTAGT
155717 C
1 C
155718 TCGCGTGCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
12 5 0.20
13 20 0.80
ACGTcount: A:0.21, C:0.26, G:0.18, T:0.36
Consensus pattern (13 bp):
CGACCAGTTTAGT
Left flanking sequence: Indices 155179 -- 155678
GACTTGCCGTTTGTCAAGCAGGCGCTGCCGGACTTGCGGGCGATTTTCGACGCGTTGGCGGTCAA
TGTCAAGGGCTCGAGCCCGGGCGAGGAAACGCTGTGAGTGTATATTAGTGTATCATAGAATAAAG
AGGTAGTGAAAGTGTGAAAGGGGTGTGAAAGGGGTAGTGTGGAGTCCTGGTGGGGCAGGGCTGTT
TGGCTGGAGTGGTGAGTATTTCTATTCAGTCTACTGAGAGTCCACTGAGAGTCAACTGAGAGTCT
ACTCAGAGTTTGTATTCAGAGTCTACTCAGACTCTACTCAGATTCTACTGAGAGTCTAATCAGAG
TTCTACTCAGCCTCTACTCGGACTTTCTACTCATAGTCTCTAAACAGAGTTCCTGTCGTCTCTAT
TCAGAGTCTCTATCGTCTCTATTCAGAGTTTGTATCTATCGTCTCCATTTGGAGTCTACTGTTCG
TTGACCGTTTGTGTCATGTTCCATTTTTAGTTAAGACCATTCAGC
Right flanking sequence: Indices 155718 -- 156217
TCGCGTGCGACCAGTGACCCACCACGACAACAATGGGCTAAACAAAAGACCACCTCAACGTAAAA
CACTCTCAAACCACTACTCCTATACCCACTTCTCATACTCGTTCCCCTTCCCCACTCACATATTT
TTCGCCGCGCATCGATCACCACCTATGCTTTCGTGGTTGGACTTCAACGGGTACACCATCCTCGT
GTTGGTGTTTGCGGTGCTAGTCACCAAGCAGATCGTCAATGCCATCAGCAAGAGTGTGCTCCAGC
AGTGGGGCTGGCAGGTGTACATGGCAGTGGGCCCCAAGCTCGGGGTCAACCAGGCGTTCGCCGAG
TACAACGACAAGCGCCGGCAATTGTGGCAGCTCAACAAGGAAAAGCGGGCGATCTCGGCCCAGGA
CCAGTACGCCAAGTGGACCAAGCTCAACCGCCAGTGCGACAAGCTCAACGCCGAGCTCAAGCAGG
TGGAGGAGCTGATTTCAAAGGACCGGGCCACCGTCAACACCTTGG
Found at i:155703 original size:13 final size:13
Alignment explanation
Indices: 155685--155717 Score: 66
Period size: 13 Copynumber: 2.5 Consensus size: 13
155675 CAGCCGACCG
155685 TTTAGTCGACCAT
1 TTTAGTCGACCAT
155698 TTTAGTCGACCAT
1 TTTAGTCGACCAT
155711 TTTAGTC
1 TTTAGTC
155718 TCGCGTGCGA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.21, C:0.21, G:0.15, T:0.42
Consensus pattern (13 bp):
TTTAGTCGACCAT
Left flanking sequence: Indices 155185 -- 155684
CCGTTTGTCAAGCAGGCGCTGCCGGACTTGCGGGCGATTTTCGACGCGTTGGCGGTCAATGTCAA
GGGCTCGAGCCCGGGCGAGGAAACGCTGTGAGTGTATATTAGTGTATCATAGAATAAAGAGGTAG
TGAAAGTGTGAAAGGGGTGTGAAAGGGGTAGTGTGGAGTCCTGGTGGGGCAGGGCTGTTTGGCTG
GAGTGGTGAGTATTTCTATTCAGTCTACTGAGAGTCCACTGAGAGTCAACTGAGAGTCTACTCAG
AGTTTGTATTCAGAGTCTACTCAGACTCTACTCAGATTCTACTGAGAGTCTAATCAGAGTTCTAC
TCAGCCTCTACTCGGACTTTCTACTCATAGTCTCTAAACAGAGTTCCTGTCGTCTCTATTCAGAG
TCTCTATCGTCTCTATTCAGAGTTTGTATCTATCGTCTCCATTTGGAGTCTACTGTTCGTTGACC
GTTTGTGTCATGTTCCATTTTTAGTTAAGACCATTCAGCCGACCG
Right flanking sequence: Indices 155718 -- 156217
TCGCGTGCGACCAGTGACCCACCACGACAACAATGGGCTAAACAAAAGACCACCTCAACGTAAAA
CACTCTCAAACCACTACTCCTATACCCACTTCTCATACTCGTTCCCCTTCCCCACTCACATATTT
TTCGCCGCGCATCGATCACCACCTATGCTTTCGTGGTTGGACTTCAACGGGTACACCATCCTCGT
GTTGGTGTTTGCGGTGCTAGTCACCAAGCAGATCGTCAATGCCATCAGCAAGAGTGTGCTCCAGC
AGTGGGGCTGGCAGGTGTACATGGCAGTGGGCCCCAAGCTCGGGGTCAACCAGGCGTTCGCCGAG
TACAACGACAAGCGCCGGCAATTGTGGCAGCTCAACAAGGAAAAGCGGGCGATCTCGGCCCAGGA
CCAGTACGCCAAGTGGACCAAGCTCAACCGCCAGTGCGACAAGCTCAACGCCGAGCTCAAGCAGG
TGGAGGAGCTGATTTCAAAGGACCGGGCCACCGTCAACACCTTGG
Found at i:156741 original size:14 final size:14
Alignment explanation
Indices: 156722--156754 Score: 66
Period size: 14 Copynumber: 2.4 Consensus size: 14
156712 TCATAGCGAC
156722 CACTCACTGGTCCA
1 CACTCACTGGTCCA
156736 CACTCACTGGTCCA
1 CACTCACTGGTCCA
156750 CACTC
1 CACTC
156755 TCTGCTGAAC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.21, C:0.45, G:0.12, T:0.21
Consensus pattern (14 bp):
CACTCACTGGTCCA
Left flanking sequence: Indices 156222 -- 156721
CCAGGCGATCTTGGTGACGCTCACGGCGCCGGTGTGGTTTTTCCGGGTGTGGTTCCGCAAAAACG
TGTTGTTCTACTTGCCCAAGGGCGTGTTGCCCGCGTGGGTGGAGTGGGTGATGGCGTTGCCGTTC
TTTGCCGCAGGCTCGGTGGGGTTGACGATGTGGATGCAGTGTGTCAACCTGGTGGCGCTGTCGGC
GTTGTTTATGCTCAAGTTTGCGTTGTTTGAGAAGAAGGTGGCGCGGCCGGAGAAGCCGAAGGTGA
AGGTGGCTGCGTAATGTACTAATAAAAGAGAAATGTAGTTGGAAGCGATTCGGAGATGTAGTGAT
GGCGACTGGTGATTTGGTCTGAGATCGAGGATGTGGTTTCTGGTGTGAGGAGAATGCTCTTGTCT
ACTCTAAAACCAACAAGCTTCAGACTAGAATGACGATTCGAATACAAATCCATTGCAATTATCAT
GTATCTTGCATAACCCACAATCCACTCACAGTACTTCATAGCGAC
Right flanking sequence: Indices 156755 -- 157254
TCTGCTGAACACTCACTGCTTAAACAGCCACTGCAACATTCCTTGCAACACTCACTACAACACTC
ACTGCAACACTCACTGCTTACATACTCAATGGCCACCGTTAGTGAAGCGCCGGCCTAGTAACCCA
ACACCGGTGCATAAGACCGGGGTTCCCCGTCCAAACCTGGCGCCATTCTTACAGCGGTAGTAAGG
TGGGAACTTGACAACGGATCCAACGCGATCCATGCGTATCAGTCCATTTCCACTGTCTGAACCAG
TGCCTCCTAGTGCCTCGGCCCTACAATTAGTGATCCACTACGCTCAATCCCCACTATGCTTAGAC
TTCGCGTCGCCTACCAACTCGATCGCTTGTGTTCTCTTGCGTTGAGCTTGCACAACACGAACGCC
TCCAATGCTACAATCCACAACCAACAAGCTAATACTAATACCCCATTAGCCCGCTAGCTTCGTTT
AACCACCCCGTTAGCCTGCGTCCGATCTAGATCCACCCATTGTAC
Found at i:156835 original size:12 final size:12
Alignment explanation
Indices: 156783--156836 Score: 74
Period size: 12 Copynumber: 4.5 Consensus size: 12
156773 CTTAAACAGC
*
156783 CACTGCAACATT
1 CACTGCAACACT
156795 C-CTTGCAACACT
1 CAC-TGCAACACT
*
156807 CACTACAACACT
1 CACTGCAACACT
156819 CACTGCAACACT
1 CACTGCAACACT
156831 CACTGC
1 CACTGC
156837 TTACATACTC
Statistics
Matches: 37, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
11 1 0.03
12 35 0.95
13 1 0.03
ACGTcount: A:0.31, C:0.41, G:0.07, T:0.20
Consensus pattern (12 bp):
CACTGCAACACT
Left flanking sequence: Indices 156283 -- 156782
AACGTGTTGTTCTACTTGCCCAAGGGCGTGTTGCCCGCGTGGGTGGAGTGGGTGATGGCGTTGCC
GTTCTTTGCCGCAGGCTCGGTGGGGTTGACGATGTGGATGCAGTGTGTCAACCTGGTGGCGCTGT
CGGCGTTGTTTATGCTCAAGTTTGCGTTGTTTGAGAAGAAGGTGGCGCGGCCGGAGAAGCCGAAG
GTGAAGGTGGCTGCGTAATGTACTAATAAAAGAGAAATGTAGTTGGAAGCGATTCGGAGATGTAG
TGATGGCGACTGGTGATTTGGTCTGAGATCGAGGATGTGGTTTCTGGTGTGAGGAGAATGCTCTT
GTCTACTCTAAAACCAACAAGCTTCAGACTAGAATGACGATTCGAATACAAATCCATTGCAATTA
TCATGTATCTTGCATAACCCACAATCCACTCACAGTACTTCATAGCGACCACTCACTGGTCCACA
CTCACTGGTCCACACTCTCTGCTGAACACTCACTGCTTAAACAGC
Right flanking sequence: Indices 156837 -- 157336
TTACATACTCAATGGCCACCGTTAGTGAAGCGCCGGCCTAGTAACCCAACACCGGTGCATAAGAC
CGGGGTTCCCCGTCCAAACCTGGCGCCATTCTTACAGCGGTAGTAAGGTGGGAACTTGACAACGG
ATCCAACGCGATCCATGCGTATCAGTCCATTTCCACTGTCTGAACCAGTGCCTCCTAGTGCCTCG
GCCCTACAATTAGTGATCCACTACGCTCAATCCCCACTATGCTTAGACTTCGCGTCGCCTACCAA
CTCGATCGCTTGTGTTCTCTTGCGTTGAGCTTGCACAACACGAACGCCTCCAATGCTACAATCCA
CAACCAACAAGCTAATACTAATACCCCATTAGCCCGCTAGCTTCGTTTAACCACCCCGTTAGCCT
GCGTCCGATCTAGATCCACCCATTGTACGCTGCACCATGGTAGTGGTGACACACCTCGCGTATTT
AAACGAGCACCCCTTAACCCGCGGTTCATCCAAACCCCTTGACAG
Found at i:157970 original size:12 final size:12
Alignment explanation
Indices: 157953--157982 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
157943 TTAGGCACAC
157953 GTTTCACATCAG
1 GTTTCACATCAG
*
157965 GTTTCACATCAT
1 GTTTCACATCAG
157977 GTTTCA
1 GTTTCA
157983 GGTTTGATTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.23, C:0.23, G:0.13, T:0.40
Consensus pattern (12 bp):
GTTTCACATCAG
Left flanking sequence: Indices 157453 -- 157952
ACCCGTCGTCTACCCATGTGATTGTTAGCCCCAGAGATTTCGTCCACACCAGTATGTGGGATACC
AACTCGCTAGTGCTCCTTTTCATCGTCACCGTGGTGGTGGTGTCGTTCTTTCTCAATGCAGACAC
CTTCCAGGCGCTGTTCCCCACCCTGGCCGCAAAACAGCTGTCGCTTTTGTTCGACAACGGCGTCC
TCCTCACCAAGATGGTGTTGTGGACGATGTTCTTTCACTTTTGTGTGAGATGTGTGGTGGAAATC
GCTGCTGCTAACGACCGGTGCATGAGCGACAAGAAGTTAGCTGATGGCCGGTGTGCGCTGAACAG
CGACAACTTGGTGTATGATGTCACCATGGCGTTTATCGTTGGAATCACCACCGCGTGGGTCCACG
GGTGGATCCAGCACCCGAACCCCAACATGAGACGCCCCGAGCAAAGGAGGGCGACCGAGCCCATG
AGGGCTGAGCCCAAGAGAGCCGAGTCCAAAAGAGCTTAGGCACAC
Right flanking sequence: Indices 157983 -- 158482
GGTTTGATTTCACCTACGGTTCTGACTCAATCCTATCCATTATTCCTATACCTACAACTTGGTGA
TGAGCTTGCCGGGGCCCTTGTCGGCAAACAACTTCATCCACACCTCGGGCACCTTCTTCAAGTCG
CCCTCGACGTCGACCACGGTGACGCCGTCCATCTTGACCTTGCCCTCCTTGATGGCCTTGAGCAA
CACAGGAGCAGCATCGCCCCACTCAGACACAAAGTCCAGGACAATGAATCCCTGCACCGTGAGCC
GGTTGACAATGATCTCGTTCCACGCCTTGACCCACATCTTCAGGTGGTCGTTGTACCCAGCAATG
GCACCGCACGCCACCACCCGGCCAAACGGCTTCACCTTGGACAAGCAGAGGTCAAGCTGCTCGCC
ACCGACGTTGTCGTAGTACACGTCGACGTACTCGCCGCCCAACGCCTTCTCGAGCTCCTGCTTGA
GGTTGCCGCTCTTGTAGTTAATACACACGTCCGCCCCCAACGACT
Found at i:168220 original size:18 final size:18
Alignment explanation
Indices: 168197--168253 Score: 105
Period size: 18 Copynumber: 3.2 Consensus size: 18
168187 CACCCCCGTA
168197 CTGCTGCGGCGGGTACTG
1 CTGCTGCGGCGGGTACTG
168215 CTGCTGCGGCGGGTACTG
1 CTGCTGCGGCGGGTACTG
*
168233 CTGTTGCGGCGGGTACTG
1 CTGCTGCGGCGGGTACTG
168251 CTG
1 CTG
168254 TTGAGGAGGG
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
18 38 1.00
ACGTcount: A:0.05, C:0.26, G:0.44, T:0.25
Consensus pattern (18 bp):
CTGCTGCGGCGGGTACTG
Left flanking sequence: Indices 167697 -- 168196
AAGATTAGAAATCTTTTGCTCTCTGAGCGCGTAGGTTCGAGTCCTGCAGTTGTCGATATCTTTTT
GCATTTTTTGCCACCTGCGAGAGAACGACAATTACGACCACCGAACCCGGCTGATCGTATTGTAG
TCTATCCATTGTTCTTGTTGATTCTTACATACACCTAGAAGTCTCCACCGAAGTCACCACCATCG
AAATCACCACCACCACCGTCGTCAAAGTCCTGCTGGTCCTCTCTGCCATCCATGTAGGCGTCATG
CTGCATGTCGTTGATCCCGTTCATCAACATCATACCACCAAGCATACCACCACCGGCACCAAGCA
ATGCACCCGTCCCGGCACCCATGCCACCACCGCGTCTAGGCGGCTGCTGGTAGTACTGCTGAGGA
GGAGGGCCGTAACCGGGTCCACCGTACCCCTGGGGAGGCCCGTAGTAGCCCTGGGGAGGGCCGTA
ACCGGGACCACCAAACCCCTGGGGTGGGCCGTACCCACCCCCGTA
Right flanking sequence: Indices 168254 -- 168753
TTGAGGAGGGTAGTTGTTGGTAGGCTTCTTCCCCGAAAACCACCCGCGGTCGGATTGGTCCTGGT
TGCTGTTGCGCAGTGCGGTCTGCTGGGGAGGAGAAGCAGAGGCCTGTGGAGGTGCCTGGGGCTTA
TCGTCAGGGGCGTACGGAGGAGGCTTGATGTCGTCCGCCTTGGGTAAGTCCCATTGAGACTTTTT
CGTCTCCAAGTTGACAAAGTACCATCTGCCGTAGTTGCTGTCCCACTTGGCCAAGTACCCATCGG
GCACCGGCGGCTCCTGGCTCTTGTCGTTCAACTTCATGGCGGGGTACCCAGGTCTGATTTGCTAT
TTTATTTGTCGTGCTATATACAGGCGGCGAGTGCGAATGATGTTTTGTGGCGTAGTGGAGGCTAA
GCGAGATCATTCATCGTGCACACAGAACATGTCGCCCAACACTGCGTCGGCGATCAGAAGCACCA
AGTGGCGGTTGAGGGGGTCGTGCTGCATCATGGCGAACACCTTTG
Found at i:171234 original size:15 final size:15
Alignment explanation
Indices: 171198--171241 Score: 58
Period size: 15 Copynumber: 3.1 Consensus size: 15
171188 CTTTTCCTTC
171198 TTGTCTATCT-TTTC-
1 TTGTCT-TCTCTTTCT
171212 TT-TCTTCTCTTTCT
1 TTGTCTTCTCTTTCT
171226 TTGTCTTCTCTTTCT
1 TTGTCTTCTCTTTCT
171241 T
1 T
171242 CTCCTTCTTC
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
12 3 0.11
13 7 0.26
14 4 0.15
15 13 0.48
ACGTcount: A:0.02, C:0.25, G:0.05, T:0.68
Consensus pattern (15 bp):
TTGTCTTCTCTTTCT
Left flanking sequence: Indices 170698 -- 171197
GCGCGAACCACGACTCGACAAACTCGCCAAGGATGAGGTCAATGAACCCGTCGAGCTGTTGCGAA
GTGAGCCGTGACTCGGGAAACACCGGCTGTCTCGAGCCCGAGTCCTTCCGAGCGGCAATCGGAGG
AGGCGGTCGCACGGGAGGAGGGGGCGGCACGTAGTGCCCCTTGGCGACGAGGAGACGTGCCACCA
CCACGAGGGGTACAAGCATCCCCACAAGCATCCACACCACGTGGGACAAGTGGCGGAGCCCCACC
GCTAGAACGACAACGGCGATCGTGGCCCGCACTGCCGTTTGCATGGGGGGAATGGCTACACGGTT
TAGGTACGCGAGTTTATTTGTGCATGGGTTAGGCGCCCGCGCACGATGCATCTATGACGATTTTG
ATTTTTTCGAGGGTTTGGAGTCGGTGCTGCGGGAGCGTTTTAGGTTGGGGGTAGACTCGGTGGGG
GTAGTGTTCTTGTCCTTCTTTTCCTTTTTCTCCTTCTTTTCCTTC
Right flanking sequence: Indices 171242 -- 171741
CTCCTTCTTCTCCTTCTTATCTGTCTTCTCCTTCTCTTTCTTGTCCTTCTTGTCCTTCTTCTCCT
TCTTCTCCTTCTTTTCCTTCTTTTCCTTCTTCTCCTTTTTGTCCTCCTCCTTCCCCTCTACATGG
AACGCCTTGTCCATGTCCTTGGCCATCGCGGCCCGATCGATCTCTTGAGACTTCTCAAGACTGGT
CTTCCCTTCGGTACCAGCCAAGCCCTCACCCTTAACAAACATGCGATATAGCGGCAGGGTACGCT
TCCGCATATCGTAAGCCACCTTATCGTCGTTGGTGTTGATCTTCACCTCGCCCGCCAGCGAAGAA
ACCTCCATGTTCTTGAGCGACCCGTCAAACAACTGCTCCCACCACATATCGCTGTCCTGGCGGTC
GCCGCCGAGCCCCCGCGTGTCCTTCTTGTGCTTCACAAGGATCGGCTTCTTGAGCCCGCCTTTCT
TGAGCGCCTCCCCATCTTTCCAGCCAAACAGCTGCAAATAGGCTC
Found at i:171237 original size:24 final size:24
Alignment explanation
Indices: 171205--171301 Score: 79
Period size: 24 Copynumber: 3.9 Consensus size: 24
171195 TTCTTGTCTA
* *
171205 TCTTTTCTTTCTTCTCTTTCTTTG
1 TCTTCTCTTTCTTCTCCTTCTTTG
*
171229 TCTTCTCTTTCTTCTCCTTCTTCTCCT
1 TCTTCTCTTTCTTCTCCTTCTT-T--G
* *
171256 TCTTATCTGTCTTCTCCTTCTCTT-
1 TCTTCTCTTTCTTCTCCTTCT-TTG
* * *
171280 TCTTGTCCTTCTTGTCCTTCTT
1 TCTTCTCTTTCTTCTCCTTCTT
171302 CTCCTTCTTC
Statistics
Matches: 60, Mismatches: 9, Indels: 9
0.77 0.12 0.12
Matches are distributed among these distances:
23 1 0.02
24 37 0.62
25 1 0.02
27 20 0.33
28 1 0.02
ACGTcount: A:0.01, C:0.33, G:0.04, T:0.62
Consensus pattern (24 bp):
TCTTCTCTTTCTTCTCCTTCTTTG
Left flanking sequence: Indices 170705 -- 171204
CCACGACTCGACAAACTCGCCAAGGATGAGGTCAATGAACCCGTCGAGCTGTTGCGAAGTGAGCC
GTGACTCGGGAAACACCGGCTGTCTCGAGCCCGAGTCCTTCCGAGCGGCAATCGGAGGAGGCGGT
CGCACGGGAGGAGGGGGCGGCACGTAGTGCCCCTTGGCGACGAGGAGACGTGCCACCACCACGAG
GGGTACAAGCATCCCCACAAGCATCCACACCACGTGGGACAAGTGGCGGAGCCCCACCGCTAGAA
CGACAACGGCGATCGTGGCCCGCACTGCCGTTTGCATGGGGGGAATGGCTACACGGTTTAGGTAC
GCGAGTTTATTTGTGCATGGGTTAGGCGCCCGCGCACGATGCATCTATGACGATTTTGATTTTTT
CGAGGGTTTGGAGTCGGTGCTGCGGGAGCGTTTTAGGTTGGGGGTAGACTCGGTGGGGGTAGTGT
TCTTGTCCTTCTTTTCCTTTTTCTCCTTCTTTTCCTTCTTGTCTA
Right flanking sequence: Indices 171302 -- 171801
CTCCTTCTTCTCCTTCTTTTCCTTCTTTTCCTTCTTCTCCTTTTTGTCCTCCTCCTTCCCCTCTA
CATGGAACGCCTTGTCCATGTCCTTGGCCATCGCGGCCCGATCGATCTCTTGAGACTTCTCAAGA
CTGGTCTTCCCTTCGGTACCAGCCAAGCCCTCACCCTTAACAAACATGCGATATAGCGGCAGGGT
ACGCTTCCGCATATCGTAAGCCACCTTATCGTCGTTGGTGTTGATCTTCACCTCGCCCGCCAGCG
AAGAAACCTCCATGTTCTTGAGCGACCCGTCAAACAACTGCTCCCACCACATATCGCTGTCCTGG
CGGTCGCCGCCGAGCCCCCGCGTGTCCTTCTTGTGCTTCACAAGGATCGGCTTCTTGAGCCCGCC
TTTCTTGAGCGCCTCCCCATCTTTCCAGCCAAACAGCTGCAAATAGGCTCGAGCGTTCATGGCCT
CTAACTGATCGGGATGCGCTCATCGCATACCCGATGTCCCGGGCC
Found at i:171302 original size:51 final size:49
Alignment explanation
Indices: 171180--171336 Score: 163
Period size: 51 Copynumber: 3.1 Consensus size: 49
171170 CTTTTCCTTT
* * * *
171180 TTCTCCTTCTTTTCCTTCTTGT-CTATCTTTTCTTTCTTCTCTTTCTTTGTC
1 TTCTCCTTCTTCTCCTTCTTCTCCT-TCTTATC-TTCTTCTCCTTCTTT-TC
*
171231 TTCTCTTTCTTCTCCTTCTTCTCCTTCTTATCTGTCTTCTCCTTCTCTTTC
1 TTCTCCTTCTTCTCCTTCTTCTCCTTCTTATCT-TCTTCTCCTTCT-TTTC
* * * *
171282 TTGTCCTTCTTGTCCTTCTTCTCCTTCTTCTCCTTCTTTTCCTTCTTTTCC
1 TTCTCCTTCTTCTCCTTCTTCTCCTTCTTAT-CTTCTTCTCCTTCTTTT-C
171333 TTCT
1 TTCT
171337 TCTCCTTTTT
Statistics
Matches: 90, Mismatches: 11, Indels: 10
0.81 0.10 0.09
Matches are distributed among these distances:
50 4 0.04
51 80 0.89
52 6 0.07
ACGTcount: A:0.01, C:0.34, G:0.03, T:0.61
Consensus pattern (49 bp):
TTCTCCTTCTTCTCCTTCTTCTCCTTCTTATCTTCTTCTCCTTCTTTTC
Left flanking sequence: Indices 170680 -- 171179
CGGGATCCAGCAGGATCAGCGCGAACCACGACTCGACAAACTCGCCAAGGATGAGGTCAATGAAC
CCGTCGAGCTGTTGCGAAGTGAGCCGTGACTCGGGAAACACCGGCTGTCTCGAGCCCGAGTCCTT
CCGAGCGGCAATCGGAGGAGGCGGTCGCACGGGAGGAGGGGGCGGCACGTAGTGCCCCTTGGCGA
CGAGGAGACGTGCCACCACCACGAGGGGTACAAGCATCCCCACAAGCATCCACACCACGTGGGAC
AAGTGGCGGAGCCCCACCGCTAGAACGACAACGGCGATCGTGGCCCGCACTGCCGTTTGCATGGG
GGGAATGGCTACACGGTTTAGGTACGCGAGTTTATTTGTGCATGGGTTAGGCGCCCGCGCACGAT
GCATCTATGACGATTTTGATTTTTTCGAGGGTTTGGAGTCGGTGCTGCGGGAGCGTTTTAGGTTG
GGGGTAGACTCGGTGGGGGTAGTGTTCTTGTCCTTCTTTTCCTTT
Right flanking sequence: Indices 171337 -- 171836
TCTCCTTTTTGTCCTCCTCCTTCCCCTCTACATGGAACGCCTTGTCCATGTCCTTGGCCATCGCG
GCCCGATCGATCTCTTGAGACTTCTCAAGACTGGTCTTCCCTTCGGTACCAGCCAAGCCCTCACC
CTTAACAAACATGCGATATAGCGGCAGGGTACGCTTCCGCATATCGTAAGCCACCTTATCGTCGT
TGGTGTTGATCTTCACCTCGCCCGCCAGCGAAGAAACCTCCATGTTCTTGAGCGACCCGTCAAAC
AACTGCTCCCACCACATATCGCTGTCCTGGCGGTCGCCGCCGAGCCCCCGCGTGTCCTTCTTGTG
CTTCACAAGGATCGGCTTCTTGAGCCCGCCTTTCTTGAGCGCCTCCCCATCTTTCCAGCCAAACA
GCTGCAAATAGGCTCGAGCGTTCATGGCCTCTAACTGATCGGGATGCGCTCATCGCATACCCGAT
GTCCCGGGCCGCTAACCGGAGGTTCTTTCACGCGAAAGCCGCACA
Found at i:171311 original size:42 final size:42
Alignment explanation
Indices: 171159--171322 Score: 156
Period size: 42 Copynumber: 3.9 Consensus size: 42
171149 GGGGGTAGTG
* * *
171159 TTCTTGTCCTTCTTTTCCTTTTTCTCCTTCTTTTCCTTCTTGT-C
1 TTCTTGTCCTTCTTCTCCTTCTTCTCCTTC---TCTTTCTTGTCC
* * * * *
171203 TATCTTTTCTTTCTTCTCTTTCTT-TGTCTTCTCTTTCTTCTCC
1 T-TCTTGTCCTTCTTCTCCTTCTTCT-CCTTCTCTTTCTTGTCC
* *
171246 TTCTTCTCCTTCTTAT-CTGTCTTCTCCTTCTCTTTCTTGTCC
1 TTCTTGTCCTTCTTCTCCT-TCTTCTCCTTCTCTTTCTTGTCC
171288 TTCTTGTCCTTCTTCTCCTTCTTCTCCTTCT-TTTC
1 TTCTTGTCCTTCTTCTCCTTCTTCTCCTTCTCTTTC
171323 CTTCTTTTCC
Statistics
Matches: 98, Mismatches: 16, Indels: 15
0.76 0.12 0.12
Matches are distributed among these distances:
41 5 0.05
42 65 0.66
43 5 0.05
44 2 0.02
45 21 0.21
ACGTcount: A:0.01, C:0.34, G:0.04, T:0.62
Consensus pattern (42 bp):
TTCTTGTCCTTCTTCTCCTTCTTCTCCTTCTCTTTCTTGTCC
Left flanking sequence: Indices 170659 -- 171158
GCCGGATGGCATCAACAAACCCGGGATCCAGCAGGATCAGCGCGAACCACGACTCGACAAACTCG
CCAAGGATGAGGTCAATGAACCCGTCGAGCTGTTGCGAAGTGAGCCGTGACTCGGGAAACACCGG
CTGTCTCGAGCCCGAGTCCTTCCGAGCGGCAATCGGAGGAGGCGGTCGCACGGGAGGAGGGGGCG
GCACGTAGTGCCCCTTGGCGACGAGGAGACGTGCCACCACCACGAGGGGTACAAGCATCCCCACA
AGCATCCACACCACGTGGGACAAGTGGCGGAGCCCCACCGCTAGAACGACAACGGCGATCGTGGC
CCGCACTGCCGTTTGCATGGGGGGAATGGCTACACGGTTTAGGTACGCGAGTTTATTTGTGCATG
GGTTAGGCGCCCGCGCACGATGCATCTATGACGATTTTGATTTTTTCGAGGGTTTGGAGTCGGTG
CTGCGGGAGCGTTTTAGGTTGGGGGTAGACTCGGTGGGGGTAGTG
Right flanking sequence: Indices 171323 -- 171822
CTTCTTTTCCTTCTTCTCCTTTTTGTCCTCCTCCTTCCCCTCTACATGGAACGCCTTGTCCATGT
CCTTGGCCATCGCGGCCCGATCGATCTCTTGAGACTTCTCAAGACTGGTCTTCCCTTCGGTACCA
GCCAAGCCCTCACCCTTAACAAACATGCGATATAGCGGCAGGGTACGCTTCCGCATATCGTAAGC
CACCTTATCGTCGTTGGTGTTGATCTTCACCTCGCCCGCCAGCGAAGAAACCTCCATGTTCTTGA
GCGACCCGTCAAACAACTGCTCCCACCACATATCGCTGTCCTGGCGGTCGCCGCCGAGCCCCCGC
GTGTCCTTCTTGTGCTTCACAAGGATCGGCTTCTTGAGCCCGCCTTTCTTGAGCGCCTCCCCATC
TTTCCAGCCAAACAGCTGCAAATAGGCTCGAGCGTTCATGGCCTCTAACTGATCGGGATGCGCTC
ATCGCATACCCGATGTCCCGGGCCGCTAACCGGAGGTTCTTTCAC
Found at i:171351 original size:9 final size:9
Alignment explanation
Indices: 171159--171343 Score: 161
Period size: 9 Copynumber: 21.2 Consensus size: 9
171149 GGGGGTAGTG
*
171159 TTCTTGTCC
1 TTCTTCTCC
*
171168 TTCTTTTCC
1 TTCTTCTCC
*
171177 TTTTTCTCC
1 TTCTTCTCC
*
171186 TTCTTTTCC
1 TTCTTCTCC
*
171195 TTCTTGT-C
1 TTCTTCTCC
* *
171203 TATCTTTTCT
1 T-TCTTCTCC
*
171213 TTCTTCTCT
1 TTCTTCTCC
171222 TTCTT-T--
1 TTCTTCTCC
* *
171228 GTCTTCTCT
1 TTCTTCTCC
171237 TTCTTCTCC
1 TTCTTCTCC
171246 TTCTTCTCC
1 TTCTTCTCC
*
171255 TTCTTAT-C
1 TTCTTCTCC
171263 TGTCTTCTCC
1 T-TCTTCTCC
171273 TTC-TCT--
1 TTCTTCTCC
*
171279 TTCTTGTCC
1 TTCTTCTCC
*
171288 TTCTTGTCC
1 TTCTTCTCC
171297 TTCTTCTCC
1 TTCTTCTCC
171306 TTCTTCTCC
1 TTCTTCTCC
*
171315 TTCTTTTCC
1 TTCTTCTCC
*
171324 TTCTTTTCC
1 TTCTTCTCC
171333 TTCTTCTCC
1 TTCTTCTCC
171342 TT
1 TT
171344 TTTGTCCTCC
Statistics
Matches: 148, Mismatches: 18, Indels: 20
0.80 0.10 0.11
Matches are distributed among these distances:
6 7 0.05
7 3 0.02
8 8 0.05
9 127 0.86
10 3 0.02
ACGTcount: A:0.01, C:0.34, G:0.03, T:0.62
Consensus pattern (9 bp):
TTCTTCTCC
Left flanking sequence: Indices 170659 -- 171158
GCCGGATGGCATCAACAAACCCGGGATCCAGCAGGATCAGCGCGAACCACGACTCGACAAACTCG
CCAAGGATGAGGTCAATGAACCCGTCGAGCTGTTGCGAAGTGAGCCGTGACTCGGGAAACACCGG
CTGTCTCGAGCCCGAGTCCTTCCGAGCGGCAATCGGAGGAGGCGGTCGCACGGGAGGAGGGGGCG
GCACGTAGTGCCCCTTGGCGACGAGGAGACGTGCCACCACCACGAGGGGTACAAGCATCCCCACA
AGCATCCACACCACGTGGGACAAGTGGCGGAGCCCCACCGCTAGAACGACAACGGCGATCGTGGC
CCGCACTGCCGTTTGCATGGGGGGAATGGCTACACGGTTTAGGTACGCGAGTTTATTTGTGCATG
GGTTAGGCGCCCGCGCACGATGCATCTATGACGATTTTGATTTTTTCGAGGGTTTGGAGTCGGTG
CTGCGGGAGCGTTTTAGGTTGGGGGTAGACTCGGTGGGGGTAGTG
Right flanking sequence: Indices 171344 -- 171843
TTTGTCCTCCTCCTTCCCCTCTACATGGAACGCCTTGTCCATGTCCTTGGCCATCGCGGCCCGAT
CGATCTCTTGAGACTTCTCAAGACTGGTCTTCCCTTCGGTACCAGCCAAGCCCTCACCCTTAACA
AACATGCGATATAGCGGCAGGGTACGCTTCCGCATATCGTAAGCCACCTTATCGTCGTTGGTGTT
GATCTTCACCTCGCCCGCCAGCGAAGAAACCTCCATGTTCTTGAGCGACCCGTCAAACAACTGCT
CCCACCACATATCGCTGTCCTGGCGGTCGCCGCCGAGCCCCCGCGTGTCCTTCTTGTGCTTCACA
AGGATCGGCTTCTTGAGCCCGCCTTTCTTGAGCGCCTCCCCATCTTTCCAGCCAAACAGCTGCAA
ATAGGCTCGAGCGTTCATGGCCTCTAACTGATCGGGATGCGCTCATCGCATACCCGATGTCCCGG
GCCGCTAACCGGAGGTTCTTTCACGCGAAAGCCGCACAAACGCTG
Found at i:182587 original size:30 final size:30
Alignment explanation
Indices: 182553--182612 Score: 95
Period size: 30 Copynumber: 2.0 Consensus size: 30
182543 AGGCTACGGC
*
182553 GGCCC-CCCTCAGGGCGGTTACTACCAGCAG
1 GGCCCTCCC-CAGGGCGGGTACTACCAGCAG
182583 GGCCCTCCCCAGGGCGGGTACTACCAGCAG
1 GGCCCTCCCCAGGGCGGGTACTACCAGCAG
182613 CAGCAGGTAA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
30 25 0.89
31 3 0.11
ACGTcount: A:0.17, C:0.40, G:0.32, T:0.12
Consensus pattern (30 bp):
GGCCCTCCCCAGGGCGGGTACTACCAGCAG
Left flanking sequence: Indices 182053 -- 182552
CGTGCCATCCCGCCAGGTTGACGGGAGGGGCCCGGTGGCAACGGTGGGTGGGGCCCCGGTGGTCA
TGCGGTGGTGCGTGGTCGCGAGCATGAGCTTGGTCGGGTGCACCTGACCCCCGCGACGGGCTTTG
TGAACAAGGCTGAGCCGTGCTGACGTAGTAAAGTGGATCGGTGGGGAATAGAGCAGTGTAGTGTG
GATCAGCAAAAGCCTGGTTACATCTAAAAGTGGAGAGTGGGGTAGAGGCGAGCCATTAAACTACT
AGCTCCAGGTGGTTCGGTGCAGCTCGTAAATTACTTTTTCTCGTCACCGTTGACAAGCCCCTCTC
TAATGAAACAGGCAGTGCGTCTAAGCCGAAGCCGGGTCGGCACGGTTGACGGCATCGACTGGTGT
CGCCAGCACTAATTCCTGCACGCACCGCACCACCCCTTGACGAAACAAAAACAAAATTATAGTTT
AATTCTCCCATGTCTTACCAACAAGGATACCAGCAAGGCTACGGC
Right flanking sequence: Indices 182613 -- 183112
CAGCAGGTAAGTCAATTCCTATTTGCATTGATCGCTTGATCCCTACTAACGATAGCCCGTTTACG
TCCAGCAACAGCCCCAGAGCGACGGTTGCGGGTGCTGTGGCACCTTCTGCGGTTGTCTCGCCGCC
ATTTTCTGTTGCGAGATGTTGTTCTAGACCCTGCTCGTTACATACCTAATACACACATTTCTAGC
TTTTCATCGCGAACGCGGCTCGGTGCGTGTTTAATCGCAACGGGACACAACGCACCCCGGTCACC
ATGGCAGACGAGGTGCTCGCAGTGTTCGACCACATGGTGGCGGACATGCGGCGGCGGCTCGAGGC
CGAGATCGCTGCCAAGCTTACCCCCATTGCCCCTGAGACCCCTGGTGTCGACCTCCCCGACGAGA
TCCTCGTCACCATTTTCGACCACTTGCACCAGGTGGATTGTGTGCGGGTGTGTCAGGTGAGCCGC
CGGTTCAATCGATTGGGCAAGGCGCGGTTGTTGCGCCATGTCGTG
Found at i:189400 original size:9 final size:9
Alignment explanation
Indices: 189386--189410 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
189376 CAGGGTCACA
189386 ACGGTGGCC
1 ACGGTGGCC
189395 ACGGTGGCC
1 ACGGTGGCC
189404 ACGGTGG
1 ACGGTGG
189411 AAAGGGCCCA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.12, C:0.28, G:0.48, T:0.12
Consensus pattern (9 bp):
ACGGTGGCC
Left flanking sequence: Indices 188886 -- 189385
TGGCCTAGACCCACGAGGGTGGCTGTACACTTAACATATTTAAATGGAGGGCACCTACGGGTATC
CTTAACGAACTTTAGTCACTCCTTTCATGAAATTTGTTATCCTTTTTGCAGCCGTTGCCCTCGCG
GCGCCTATAGCCCCGGTTCCCTCTCCTCTGGTGCAGACACCGGCGACTGGTGCCTTGTTGGAACA
ATCGGACAATGGTTTGAGTCATTCGGGGTCAGCTTTCACGACTGTTGTGCCCACGAGCGCTCTGA
TCCTCCCAATCTTGTCTCTGTCCTTAGCTGGCAACTCGTCTGCCTACCAGCCCACTGACGAGGTG
CCTCCCCTCTCGCCCACTGCATTTTACAACCTGTCGCTGAGCTCAAAGACGTTCTATGGTAACCT
CACAACCATGACCACCACCGATGTGATCACTACTACCGAAGTCTCAGATATCCCCACCACGATAA
CTGTTACGCTGGTTGTGACCACTACCGCTCAGAACCAGGGTCACA
Right flanking sequence: Indices 189411 -- 189910
AAAGGGCCCAGGGAACCATAAAGGTACCCGTCCCGAGCACGGCAAGGGTCAGGGCGAGACTGGTG
AAGACCAGAACGGGTTGGACGATTCCAATGGTGCTGGTGGTCAGACCGATGGTTCTGATCAGAAC
ACTGGTGGCCAGAACGGTAACGAAGACACCCAAGGGCAGGACACTGAAACTGGCAACGGCACTGG
TGACCAGACTGGCGGTTCCCCCGATCAAAACACTGGTGGCCAGACTGACGGTTCCCCCAATCAAA
GCACTGGCGGCCAGACTGATGGCCAGACTGAAGGCCAGACTGAAGGCCAGACTGAAGGCCAGACC
GAAGACGACGGTGCGAGCGATGGGTCTGGTGGCCTGGATGAGGGCTCGGAAAACCTGGAAGACAC
TGGCTCCGGAGCTCAGGACGTCCAAAACACCGAAAACAACCAGGACTCTGACTTGAAGGAACAAG
CACCCGAAAAGGATAACAACAAGGGCAACCACAAAGGTCAGGATG
Found at i:189649 original size:36 final size:36
Alignment explanation
Indices: 189600--189689 Score: 135
Period size: 36 Copynumber: 2.5 Consensus size: 36
189590 CTGGCAACGG
* * *
189600 CACTGGTGACCAGACTGGCGGTTCCCCCGATCAAAA
1 CACTGGTGGCCAGACTGACGGTTCCCCCAATCAAAA
*
189636 CACTGGTGGCCAGACTGACGGTTCCCCCAATCAAAG
1 CACTGGTGGCCAGACTGACGGTTCCCCCAATCAAAA
*
189672 CACTGGCGGCCAGACTGA
1 CACTGGTGGCCAGACTGA
189690 TGGCCAGACT
Statistics
Matches: 49, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
36 49 1.00
ACGTcount: A:0.24, C:0.33, G:0.27, T:0.16
Consensus pattern (36 bp):
CACTGGTGGCCAGACTGACGGTTCCCCCAATCAAAA
Left flanking sequence: Indices 189100 -- 189599
CATTCGGGGTCAGCTTTCACGACTGTTGTGCCCACGAGCGCTCTGATCCTCCCAATCTTGTCTCT
GTCCTTAGCTGGCAACTCGTCTGCCTACCAGCCCACTGACGAGGTGCCTCCCCTCTCGCCCACTG
CATTTTACAACCTGTCGCTGAGCTCAAAGACGTTCTATGGTAACCTCACAACCATGACCACCACC
GATGTGATCACTACTACCGAAGTCTCAGATATCCCCACCACGATAACTGTTACGCTGGTTGTGAC
CACTACCGCTCAGAACCAGGGTCACAACGGTGGCCACGGTGGCCACGGTGGAAAGGGCCCAGGGA
ACCATAAAGGTACCCGTCCCGAGCACGGCAAGGGTCAGGGCGAGACTGGTGAAGACCAGAACGGG
TTGGACGATTCCAATGGTGCTGGTGGTCAGACCGATGGTTCTGATCAGAACACTGGTGGCCAGAA
CGGTAACGAAGACACCCAAGGGCAGGACACTGAAACTGGCAACGG
Right flanking sequence: Indices 189690 -- 190189
TGGCCAGACTGAAGGCCAGACTGAAGGCCAGACTGAAGGCCAGACCGAAGACGACGGTGCGAGCG
ATGGGTCTGGTGGCCTGGATGAGGGCTCGGAAAACCTGGAAGACACTGGCTCCGGAGCTCAGGAC
GTCCAAAACACCGAAAACAACCAGGACTCTGACTTGAAGGAACAAGCACCCGAAAAGGATAACAA
CAAGGGCAACCACAAAGGTCAGGATGACAAAGATATCTCTGATCACGGTTCCCATGGCAGCAACG
CTGGACACGACAATCACAACGACCAAGACCACGGGTCTCACCATCACTGGAGACCCCACAACAAC
TCCACCCACGGGCACGGGAACGGCAACTGGACTATCGACTGGCAACATAGAAGATTAGTCCCCGT
CCCCCTTCCCTGAATCAGACGCTTTTTGACAATTTGACCATTCCTTTCATCCACAAATAACTAAC
CTCCAATCACATACCATATCTCTCTCTCTCTCTCTCTCTCTCTCT
Found at i:189694 original size:12 final size:12
Alignment explanation
Indices: 189679--189739 Score: 104
Period size: 12 Copynumber: 5.1 Consensus size: 12
189669 AAGCACTGGC
*
189679 GGCCAGACTGAT
1 GGCCAGACTGAA
189691 GGCCAGACTGAA
1 GGCCAGACTGAA
189703 GGCCAGACTGAA
1 GGCCAGACTGAA
189715 GGCCAGACTGAA
1 GGCCAGACTGAA
*
189727 GGCCAGACCGAA
1 GGCCAGACTGAA
189739 G
1 G
189740 ACGACGGTGC
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 47 1.00
ACGTcount: A:0.31, C:0.26, G:0.34, T:0.08
Consensus pattern (12 bp):
GGCCAGACTGAA
Left flanking sequence: Indices 189179 -- 189678
ACTCGTCTGCCTACCAGCCCACTGACGAGGTGCCTCCCCTCTCGCCCACTGCATTTTACAACCTG
TCGCTGAGCTCAAAGACGTTCTATGGTAACCTCACAACCATGACCACCACCGATGTGATCACTAC
TACCGAAGTCTCAGATATCCCCACCACGATAACTGTTACGCTGGTTGTGACCACTACCGCTCAGA
ACCAGGGTCACAACGGTGGCCACGGTGGCCACGGTGGAAAGGGCCCAGGGAACCATAAAGGTACC
CGTCCCGAGCACGGCAAGGGTCAGGGCGAGACTGGTGAAGACCAGAACGGGTTGGACGATTCCAA
TGGTGCTGGTGGTCAGACCGATGGTTCTGATCAGAACACTGGTGGCCAGAACGGTAACGAAGACA
CCCAAGGGCAGGACACTGAAACTGGCAACGGCACTGGTGACCAGACTGGCGGTTCCCCCGATCAA
AACACTGGTGGCCAGACTGACGGTTCCCCCAATCAAAGCACTGGC
Right flanking sequence: Indices 189740 -- 190239
ACGACGGTGCGAGCGATGGGTCTGGTGGCCTGGATGAGGGCTCGGAAAACCTGGAAGACACTGGC
TCCGGAGCTCAGGACGTCCAAAACACCGAAAACAACCAGGACTCTGACTTGAAGGAACAAGCACC
CGAAAAGGATAACAACAAGGGCAACCACAAAGGTCAGGATGACAAAGATATCTCTGATCACGGTT
CCCATGGCAGCAACGCTGGACACGACAATCACAACGACCAAGACCACGGGTCTCACCATCACTGG
AGACCCCACAACAACTCCACCCACGGGCACGGGAACGGCAACTGGACTATCGACTGGCAACATAG
AAGATTAGTCCCCGTCCCCCTTCCCTGAATCAGACGCTTTTTGACAATTTGACCATTCCTTTCAT
CCACAAATAACTAACCTCCAATCACATACCATATCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTC
TCTTCCTATCCATCTATTTTACCATCTGATTTACTAGCCTGATTT
Found at i:190170 original size:2 final size:2
Alignment explanation
Indices: 190163--190197 Score: 61
Period size: 2 Copynumber: 17.5 Consensus size: 2
190153 ACATACCATA
*
190163 TC TC TC TC TC TC TC TC TC TC TC TC TC TT TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
190198 TCCTATCCAT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.00, C:0.46, G:0.00, T:0.54
Consensus pattern (2 bp):
TC
Left flanking sequence: Indices 189663 -- 190162
CAATCAAAGCACTGGCGGCCAGACTGATGGCCAGACTGAAGGCCAGACTGAAGGCCAGACTGAAG
GCCAGACCGAAGACGACGGTGCGAGCGATGGGTCTGGTGGCCTGGATGAGGGCTCGGAAAACCTG
GAAGACACTGGCTCCGGAGCTCAGGACGTCCAAAACACCGAAAACAACCAGGACTCTGACTTGAA
GGAACAAGCACCCGAAAAGGATAACAACAAGGGCAACCACAAAGGTCAGGATGACAAAGATATCT
CTGATCACGGTTCCCATGGCAGCAACGCTGGACACGACAATCACAACGACCAAGACCACGGGTCT
CACCATCACTGGAGACCCCACAACAACTCCACCCACGGGCACGGGAACGGCAACTGGACTATCGA
CTGGCAACATAGAAGATTAGTCCCCGTCCCCCTTCCCTGAATCAGACGCTTTTTGACAATTTGAC
CATTCCTTTCATCCACAAATAACTAACCTCCAATCACATACCATA
Right flanking sequence: Indices 190198 -- 190697
TCCTATCCATCTATTTTACCATCTGATTTACTAGCCTGATTTACATTCGGTCTTGGTTTCGGTAT
ATTTCCAGTGAATACACATTTTCATTATAATGTACATGTATTAGAGTGTCGTAGCTTACAAAAAC
ACCTCGGTGTTGATCTCCACCGACGACGCGGCGAAGGGAAGGTCAAAGTGGTTCAACACCTCGGG
GTGCAACACACCAATCGACCCGATGTGCTGGTCGGCAGCGCCCTCGCCGGCACGGAAGTAGACCT
TGGCGCCACGGCCGTCAAAGAAGGTAGGGTTGTTGTCTTCGGCAATCCAGTAGCCCCGACCGTTG
TCCTTCTTGGGGTCCTCCAACCACTTAGTACGCATGGTCTGCATGATCTTGCCCAAAAGACCCTG
GACGTACTCAAACCCGGAGGTCTTGCCGGCGTAAACGGCACACCAGTTGCGCTGGTTGAAGGCGC
CGCGCTCGAGCTCGGGGTTCTTCAACACCACGTCACCGGCCTCAA
Found at i:196803 original size:27 final size:27
Alignment explanation
Indices: 196773--196849 Score: 109
Period size: 27 Copynumber: 2.9 Consensus size: 27
196763 TTTCCAAGTT
* *
196773 TTCACTCACCTGGTCCCCTTCCTTTTC
1 TTCACCCACCTGCTCCCCTTCCTTTTC
* *
196800 TTCACCCACCTTCTCCCCTACCTTTTC
1 TTCACCCACCTGCTCCCCTTCCTTTTC
*
196827 TTCACCCACCTGCTCCCCCTCCT
1 TTCACCCACCTGCTCCCCTTCCT
196850 CTGCAGCCTT
Statistics
Matches: 43, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 43 1.00
ACGTcount: A:0.09, C:0.52, G:0.04, T:0.35
Consensus pattern (27 bp):
TTCACCCACCTGCTCCCCTTCCTTTTC
Left flanking sequence: Indices 196273 -- 196772
GAGTGCTGGTTCCTATTCCAACATCGAGATTGGCTCGAAAAAGTTCCCTGTCCAGTTTTTGGTGG
ACATGATCCTTGTCGGCAAGCGCGGAGAAAATAACGGAGCGTGGGAGGTGGTTTCCGACAGCGAG
TCGTGCTGGTATCGCGTCAAAGAGGCCGACTACCCGATGAAGTTAGAAAATATGCGGTTCTTTTA
TAGATTGTACAGACGAAAGTGATTCAATCCATGTCATTCCATTATTATTTGGTCCCGTTTCATCG
GTGTATGCTACAATTGTCCCAGACTATAGATAATATTGCGATCACAATGGGCCCATCAGCGGTTC
CCTTGGCGAATGTACAATGGCACTAAATCTTGAGTCGGTTAATCTCGTTCGCGAGGTCGTCAGTA
GTGTTATCGTCCGCATCATTAGGTTTATCGGCGGCAATTGCACCCTCTTCAGTCTTGTCCTGAGT
CTTGGCCCCACTCTTTTCTCTCTTTTCTCCAGATTTTTCCAAGTT
Right flanking sequence: Indices 196850 -- 197349
CTGCAGCCTTCGCCACTTCCTCCGCTACCTCAATTGCCTTTTCCTTTGCCGTCTCGTGGGTCTTC
ACCGCCCCCATCTCCTTCTGCAATTCCTCCTCCCACCCCAACTCCCGCACCATCTTATCCACCAC
ATCCTCGATGTCCCCCACAATCACCGCATCCTTCTTCCGCTTAAAACTGCCCACACGGACGTTGT
TGATGAGCACCCGCGGCACCGACCGCGACACCTCCTCGGGAAGAGATGCAAACGGATGCACCTGG
AGCGAGGTTCCCACCACCATGGCAAACTCCACCGCGTCTCCGTCCTCCTCCCACAAGTCAAAGAA
CCGCTCAGGCAACCCCTCGCCAAAGAACGTGATGTCCGGCTTCACAAGCCGACCACAACTGCACC
GGGGGATGTCGTGGTTGTCGATAATTGCTTTAAGCGTGGCATTGTCCATTTCTTTACTGCACTTG
ATGCAATGGTTTGTGGCGAACGACCCGTGGGCCTCGACGATGAGG
Found at i:208650 original size:33 final size:33
Alignment explanation
Indices: 208583--208651 Score: 84
Period size: 33 Copynumber: 2.1 Consensus size: 33
208573 TGAATACGCA
* * *
208583 GACCAGTAGGAGGCTCTAGACGCCGAGTATGCC
1 GACCAGTAAGAAGCTCTAGACGCCGAGTAGGCC
* * *
208616 GACCAGTAAGAAGCTGTAGACTCCGAGTGGGCC
1 GACCAGTAAGAAGCTCTAGACGCCGAGTAGGCC
208649 GAC
1 GAC
208652 AACCACAGCT
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.26, C:0.26, G:0.33, T:0.14
Consensus pattern (33 bp):
GACCAGTAAGAAGCTCTAGACGCCGAGTAGGCC
Left flanking sequence: Indices 208083 -- 208582
CAACATGGGCATGCCTGTGATGGCGTTTGGCGCCTGCTTTGGCGGTCCTCTTCTTGCCATCTGCT
CGCTTGGGGTGAGTGCCCTCATGGTAATGGATGGGGGAAGCTACCCGCTTCACTTGACGTCTACA
GTGGCCATTGCCGCCGGGTTTGTTATCGTGAACTGTACATATTTGTTGGTGGTGGTACCACGCAA
CGACTGGACGCTTGACCGGTCGATAGGCACTGTGCTATTGGCCAATTGGCTCGGATGTACGTTGT
TTTGTTTGATATTGGAGTTGATCAAATAACTAGAGTAAGATACACAAACAAGCAGCCCCCACGGC
CAACCACGAGACGATCAATGGCACCGCACCACTACCTGACCCACCAGAACCAGAGCTCCCGCTGC
TTCCTCCGGAATCTCCAGCAGGCGGCAATGGGGTACCGGTGGCTCTAGCGCCCGTGGTCAAGGAC
GCTTTGAGAGCTGATGCTCTGGAGGCGGTCGATTCTGAATACGCA
Right flanking sequence: Indices 208652 -- 209151
AACCACAGCTCCAACGAGGCAGAACGGGAAACAGGAATGTTTGCGGACGGACCCAGGTCCTCATC
CACACTGACGTCACTGGCTCGGGCAGTGCGGGTACGCTGGGTGGTAAACCCGTACATGACGTCGT
AGTGATCAGTGACCAACCCTGTTCCGGTGGTGTAGTCCACCTTCGAGCGTGAGGGCTCCAGCTGG
TAAGTCATCAGTACCGTGGTCGCCCCCATGGAGCTGGCGTCCTTGGCCTTTGGCACCAGGTCGCT
CACCTCCTCGACATTCAGGTCCAGGGTGAACTTGACTTTGCCAATGCTGACCTTCATGCTGTCCA
AATCAAACACCGTGTACGCATGGCGCAAGACACTGTCTCCGATGATCAAGTAGTCCTCTGGTTGC
AGAGCCAACCCAAGAAGCCAGCACCACCCGTCACGGTACTCAGACACCAATTGCGCCAATGGAAC
ATCAATTTCGGCACCACCGAAGTTGAACGTGAGCTTGACATCCTC
Found at i:210672 original size:24 final size:24
Alignment explanation
Indices: 210645--210710 Score: 87
Period size: 24 Copynumber: 2.8 Consensus size: 24
210635 CGTCAGCACC
210645 GCCACCAGGGGCACCACCGGGCAT
1 GCCACCAGGGGCACCACCGGGCAT
***
210669 GCCACCAGGCATACCACCGGGCAT
1 GCCACCAGGGGCACCACCGGGCAT
* *
210693 ACCGCCAGGGGCACCACC
1 GCCACCAGGGGCACCACC
210711 AGCAGCACCG
Statistics
Matches: 34, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
24 34 1.00
ACGTcount: A:0.23, C:0.44, G:0.29, T:0.05
Consensus pattern (24 bp):
GCCACCAGGGGCACCACCGGGCAT
Left flanking sequence: Indices 210145 -- 210644
ATAACCTCGAGATCCGTGGCCAAGTTTAGGCGAAAGCGGGGGTTACTGCGTAGCAACGATCACAC
ACACGAGGGCGATACGAGGTATTCGACGGAATCGCCCCCGTTAATTATATTGCTGTGCCTGACCT
CTGAATCGAGTGTGACTTGGCTACCCTTTGTGGACCCCCACGTTGATAATGGCGTGTTACGAGCG
TTGTCGCACGGCGAACTGTGTCGTACTTGGCACTTGAATTAAGGGGTTAAATTGCCTACTGCCAA
GCACCGTTGTTAGGTGTCTAGTGGAACTGATGACCCGCTTCCGACGTCGTAGATTGGAGGCGCCA
CAAACTGCGTTTTGTAACCACTTCGACACCTCAGCCTCTATCGCGATGATCTACATTCCGACCGA
AGCTACAGATACTCGTATTACCGAATTAGTCATTGTCTCATATCACGTTCGTTATTTTCTAAACA
TATTATTTAGTCAACCTCCTCGACGGAAGGGCCCTCGTCAGCACC
Right flanking sequence: Indices 210711 -- 211210
AGCAGCACCGTAGGCCTTAGACATGATGGGGTTGGCAACGCCCTCCAACTCCTTTTGACGGTCGG
CGTACTCCTCGGTGGTAGCGCTCTGGGCGGTGTCCAACCACGAAGTAACCTCGTCGATCGCCTTC
TCAAGGGTCTCCTTGTCCGAAGCCTCGATCTTGTCCTTCATCTCACCGTCGTTGATCGAGTTCTT
CAAAGAGTAGGCGTAAGACTCAAGACCGTTCTTGGCCTGCACTCTAGCAGCCTCGGCCTCGTCCT
CCTCCTTGTACTTCTCGGCCTCAGAGACCATGCGCTCGATGTCCTCCTTGGACAATCTACCCTTG
TCGTTGGTGATGGTAATCTTTTGAGTCTTACCAGTGCCCTTCTCAACAGCGGACACGTTCAAGAT
CCCGTTAGCGTCCAAGTCGAAAGTGACCTCAATCTGAGGAACACCACGAGGAGCAGGGGGGATAC
CCGACAACTCGAACTTACCAAGCAAGTTGTTGTCCTTGGTCTTGG
Found at i:210673 original size:12 final size:12
Alignment explanation
Indices: 210657--210695 Score: 60
Period size: 12 Copynumber: 3.2 Consensus size: 12
210647 CACCAGGGGC
210657 ACCACCGGGCAT
1 ACCACCGGGCAT
* *
210669 GCCACCAGGCAT
1 ACCACCGGGCAT
210681 ACCACCGGGCAT
1 ACCACCGGGCAT
210693 ACC
1 ACC
210696 GCCAGGGGCA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.26, C:0.44, G:0.23, T:0.08
Consensus pattern (12 bp):
ACCACCGGGCAT
Left flanking sequence: Indices 210157 -- 210656
TCCGTGGCCAAGTTTAGGCGAAAGCGGGGGTTACTGCGTAGCAACGATCACACACACGAGGGCGA
TACGAGGTATTCGACGGAATCGCCCCCGTTAATTATATTGCTGTGCCTGACCTCTGAATCGAGTG
TGACTTGGCTACCCTTTGTGGACCCCCACGTTGATAATGGCGTGTTACGAGCGTTGTCGCACGGC
GAACTGTGTCGTACTTGGCACTTGAATTAAGGGGTTAAATTGCCTACTGCCAAGCACCGTTGTTA
GGTGTCTAGTGGAACTGATGACCCGCTTCCGACGTCGTAGATTGGAGGCGCCACAAACTGCGTTT
TGTAACCACTTCGACACCTCAGCCTCTATCGCGATGATCTACATTCCGACCGAAGCTACAGATAC
TCGTATTACCGAATTAGTCATTGTCTCATATCACGTTCGTTATTTTCTAAACATATTATTTAGTC
AACCTCCTCGACGGAAGGGCCCTCGTCAGCACCGCCACCAGGGGC
Right flanking sequence: Indices 210696 -- 211195
GCCAGGGGCACCACCAGCAGCACCGTAGGCCTTAGACATGATGGGGTTGGCAACGCCCTCCAACT
CCTTTTGACGGTCGGCGTACTCCTCGGTGGTAGCGCTCTGGGCGGTGTCCAACCACGAAGTAACC
TCGTCGATCGCCTTCTCAAGGGTCTCCTTGTCCGAAGCCTCGATCTTGTCCTTCATCTCACCGTC
GTTGATCGAGTTCTTCAAAGAGTAGGCGTAAGACTCAAGACCGTTCTTGGCCTGCACTCTAGCAG
CCTCGGCCTCGTCCTCCTCCTTGTACTTCTCGGCCTCAGAGACCATGCGCTCGATGTCCTCCTTG
GACAATCTACCCTTGTCGTTGGTGATGGTAATCTTTTGAGTCTTACCAGTGCCCTTCTCAACAGC
GGACACGTTCAAGATCCCGTTAGCGTCCAAGTCGAAAGTGACCTCAATCTGAGGAACACCACGAG
GAGCAGGGGGGATACCCGACAACTCGAACTTACCAAGCAAGTTGT
Done.