Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold9
Parameters: 2 7 7 80 10 50 500
Length:  331816

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--195
39
5.0
39
94
0
336
30
21
38
10
1.86
9008--9043
16
2.2
16
100
0
72
36
5
25
33
1.79
28399--28423
9
2.8
9
100
0
50
8
12
44
36
1.71
87439--87478
21
1.9
21
84
0
53
2
55
20
22
1.56
190310--190336
12
2.2
12
100
0
54
66
7
25
0
1.17
211155--211184
15
2.0
15
93
0
51
13
50
23
13
1.77
223181--223233
27
2.0
27
96
0
97
18
41
28
11
1.85
224954--224988
12
2.9
12
91
0
52
25
37
37
0
1.57
284959--285018
12
5.0
12
87
4
77
20
36
26
16
1.93
284959--285025
24
2.8
24
76
13
59
20
40
23
14
1.90
299811--299844
15
2.3
15
94
0
59
0
52
0
47
1.00
321752--321952
48
4.2
48
86
0
249
32
33
17
15
1.92
321717--321952
48
4.9
48
83
2
242
32
32
18
16
1.94
322211--322242
15
2.1
15
100
0
64
0
56
25
18
1.42
322259--322301
15
2.9
15
89
0
68
27
30
27
13
1.95

Tables:   1

The End!