Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: scaffold47
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 343015
ACGTcount: A:0.24, C:0.26, G:0.26, T:0.24
File 1 of 2
Found at i:70215 original size:24 final size:24
Alignment explanation
Indices: 70165--70215 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
70155 GAAGGAAGAT
* * **
70165 AAGAAAAAGGCCGAAGAGGAGGCG
1 AAGAAAAAAGCCGAAGAAGAGAAG
70189 AAGAAAAAAGCCGAAGAAGAGAAG
1 AAGAAAAAAGCCGAAGAAGAGAAG
70213 AAG
1 AAG
70216 GCAGAAGAGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.55, C:0.10, G:0.35, T:0.00
Consensus pattern (24 bp):
AAGAAAAAAGCCGAAGAAGAGAAG
Left flanking sequence: Indices 69665 -- 70164
CCCTGCTGTACATTGCCGCTTTGAGTGCTGGCTTGACTGGCGAGCGTTTCAGAGATTCTGGAATG
GCGCTGGTGGACCCGGACCACTACATGATGCGCCAGGTCAACGCCCTTTACCAGGATAAGGTTGT
GCATGATCACGACCAAATGTTCTGGCAAGTTGACCTGCGGATGCTGGACGCCGCTGGGAGCATTC
AAATGCCACAATACTATCTTGACAGGTTGAGTGACGAGGAAAAGCCGCTCATTCAGCCATTTGAT
CCTCGTTTCACGTTGGCGATGTACTACGAGGCACTTGTTCGCCAGTTCCAGGAAAAAGGTCGGCC
CAGTGCTAAAGCTCGCAAACTGTTGCTGCAACACGACGCCGAGTTACCTTTCCATTGGGACGATT
GGGCAGACCTCTCTGTGTTGAACAAGTACATTTTGGATAACGAGATAGACAATAGTTGTTCCCTC
ATCGATGCTACCGACGAGGCCGTGAAGTACCATGAGAAGGAAGAT
Right flanking sequence: Indices 70216 -- 70715
GCAGAAGAGGAAGCCAAGAAAAAGGAAGAGCAGAAGCTAAAGGAAGAGGCCGAGCTCAAGGCTCA
GAAAGAGGCAATCGATGCCCAAGTCAATGCATTGGTTGAAGAGAAGTTGAAGGAGGAGGCTCAGC
TTCAAGCTGAAGCCAAGCAGGCCGAGGAAGCGAAGCAAGCCGAAGAAGCGAAGGCTGCGAACGAG
AAGCAGCAAGAGGCGGCTAAATTGGCCAATGAAGTAGCTCAATTGGGTGATGAAGCCAAAAAAGT
TGAGGATGCGAAGGCAAAGGCGGAGGAAGATGCTTTGATTGCAGCTGCTGGGCCTGCTCCAGGAG
AAAATGTCAAGCGTTCAATTTTAGAGAAGCGGACAGGCAACCTCAAAGACACGAAAAAGGCCGAA
GAGTTCTGCTTCTCCCTGGCACAGATGCCAACTGACATTAAAACTGGTAACCGCCGCAATCCCGC
ATTCAATGCTCACGCCTATCCTGGTCGACTGACCAATGAAAAGAT
Found at i:70381 original size:18 final size:18
Alignment explanation
Indices: 70354--70398 Score: 63
Period size: 18 Copynumber: 2.5 Consensus size: 18
70344 GCTTCAAGCT
* * *
70354 GAAGCCAAGCAGGCCGAG
1 GAAGCGAAGCAAGCCGAA
70372 GAAGCGAAGCAAGCCGAA
1 GAAGCGAAGCAAGCCGAA
70390 GAAGCGAAG
1 GAAGCGAAG
70399 GCTGCGAACG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.40, C:0.22, G:0.38, T:0.00
Consensus pattern (18 bp):
GAAGCGAAGCAAGCCGAA
Left flanking sequence: Indices 69854 -- 70353
GCATTCAAATGCCACAATACTATCTTGACAGGTTGAGTGACGAGGAAAAGCCGCTCATTCAGCCA
TTTGATCCTCGTTTCACGTTGGCGATGTACTACGAGGCACTTGTTCGCCAGTTCCAGGAAAAAGG
TCGGCCCAGTGCTAAAGCTCGCAAACTGTTGCTGCAACACGACGCCGAGTTACCTTTCCATTGGG
ACGATTGGGCAGACCTCTCTGTGTTGAACAAGTACATTTTGGATAACGAGATAGACAATAGTTGT
TCCCTCATCGATGCTACCGACGAGGCCGTGAAGTACCATGAGAAGGAAGATAAGAAAAAGGCCGA
AGAGGAGGCGAAGAAAAAAGCCGAAGAAGAGAAGAAGGCAGAAGAGGAAGCCAAGAAAAAGGAAG
AGCAGAAGCTAAAGGAAGAGGCCGAGCTCAAGGCTCAGAAAGAGGCAATCGATGCCCAAGTCAAT
GCATTGGTTGAAGAGAAGTTGAAGGAGGAGGCTCAGCTTCAAGCT
Right flanking sequence: Indices 70399 -- 70898
GCTGCGAACGAGAAGCAGCAAGAGGCGGCTAAATTGGCCAATGAAGTAGCTCAATTGGGTGATGA
AGCCAAAAAAGTTGAGGATGCGAAGGCAAAGGCGGAGGAAGATGCTTTGATTGCAGCTGCTGGGC
CTGCTCCAGGAGAAAATGTCAAGCGTTCAATTTTAGAGAAGCGGACAGGCAACCTCAAAGACACG
AAAAAGGCCGAAGAGTTCTGCTTCTCCCTGGCACAGATGCCAACTGACATTAAAACTGGTAACCG
CCGCAATCCCGCATTCAATGCTCACGCCTATCCTGGTCGACTGACCAATGAAAAGATGATTCTCG
CGGGCAAGCTGCACCTATATCTGTTCTTTGCTCCCCCGGAGGCCATTATTTTTTTAACAGGCGAT
GGTCTCTACCGGGTTAAAACCACTTCGCGCGAGAAGCTTCTCTACAATGGTTTGGTGGAAGACCA
TCTTGATGCTACACGCAATAGTCCCACGGTCGATGTGGTTAAGCT
Found at i:85948 original size:10 final size:11
Alignment explanation
Indices: 85922--85952 Score: 55
Period size: 10 Copynumber: 2.9 Consensus size: 11
85912 TACAACCACA
85922 TTTTCTTGGTC
1 TTTTCTTGGTC
85933 TTTTCTTGGT-
1 TTTTCTTGGTC
85943 TTTTCTTGGT
1 TTTTCTTGGT
85953 ATTGCAACAA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 10 0.50
11 10 0.50
ACGTcount: A:0.00, C:0.13, G:0.19, T:0.68
Consensus pattern (11 bp):
TTTTCTTGGTC
Left flanking sequence: Indices 85422 -- 85921
GGAAATGCCCGTGCATCGCTTAGAATATGTAAATGTACATGTACGCTTGACAACGTGGGTAGGCG
GTTCTTTCTTAGTGGGCTAATATGGGGTTACTCAGGGCAGTCGGTGAGTTAACGCCTGGTTTAAT
CTTTAATTTTTAAGAGTGGGCATGACCGCCCGGGGGCCAGGCGCTTGCGACATTCCCCGCCCTCG
CTACTCAAACAATGGCAATTCTACGTGTGATCAAATAAAATTAACTTTTCAAATCGGATTATGTC
TTTCGTAATCGTTCTCGAAACGGTAAACAGGCACCCCACGTGGGGTCTGGATACAGGAAAAAATC
TGGAGATTCAGCCGTTCCTCAAGCAAGCTAAAGACATTTGCAGCCAGTCCTTAGTAGATTAGCAT
CGACAGGTTGTCAACGAGCTACTTTTCACGCTGTTTTCCTCCTTTTCCCCTTCCGTTCTGTCAAT
TTTCCAATTGAAATGACACACGTGTGGATCTGTGATACAACCACA
Right flanking sequence: Indices 85953 -- 86452
ATTGCAACAAGGAGGCTCATCATCTATAAAAACAGGCAAAAAGACGTAGTAGACTTTCTCATCAC
TAGAAGACACTCGAGTAAAGATGGCCTTGACTCAATTTAACCACATCTTCGCGGTGACGATGATC
TTCGCGTTCTTGGACGCGTGGAACATCGGTGCCAACGATGTTGCCAACTCGTTTGCGTCGTCGGT
GTCGTCTCGTTCACTCAAGTACTGGCAAGCCATGTTGCTTGCGGGTATCTGTGAGTTCTTGGGTG
CTGTGCTTGTCGGTTCGAAGGTTTCGACCGCTATCAGAAACAAGATTGTTGATGTGAAAGCTTTT
GAGGACGAGCCCGCTGTGCTTATGTTGACCATGTCGTGCGCCCTTGTTGGCTCTTCAACCTGGTT
GACTATTGCTACTTCCATCGGTATGCCGGTTTCTACGACCCATTCTATTGTTGGTGGTATTATTG
GTGCAGCGATTGGTGCCAAGGGTCAGAAGAACGTCGTTTGGGGCT
Found at i:91135 original size:19 final size:19
Alignment explanation
Indices: 91111--91188 Score: 138
Period size: 19 Copynumber: 4.1 Consensus size: 19
91101 AAGACCACAA
91111 CGTGGTGGGAGTGTCACGT
1 CGTGGTGGGAGTGTCACGT
*
91130 CGTGGTGGGAGTATCACGT
1 CGTGGTGGGAGTGTCACGT
91149 CGTGGTGGGAGTGTCACGT
1 CGTGGTGGGAGTGTCACGT
*
91168 CGTGGTGGGAGTGCCACGT
1 CGTGGTGGGAGTGTCACGT
91187 CG
1 CG
91189 GAATGAGGAA
Statistics
Matches: 56, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 56 1.00
ACGTcount: A:0.12, C:0.18, G:0.46, T:0.24
Consensus pattern (19 bp):
CGTGGTGGGAGTGTCACGT
Left flanking sequence: Indices 90611 -- 91110
TGGCCTCAAATGGTTCGGGGGAGGGTTGGTTAGTGCTTGGTAATGGATCAGTCGCGTTGTTGTTG
CCCCTTGGACTCGTCTGGAATGGTTTGAGCCCGGCATTAGGCTGTGGCCGGGTCATTTAGGGCTG
GGGTAATCGTGGTGATCTCGATATGCAAGCGCAGGGGACAACGCGCCTGTATGTAAAACAATGAT
AGCGTGACGCGTGAATGGGAAGGAATGGTGGGAGAGTAATTGAGTTGACCAACCAAGCAAGCTTC
GCAGATTTGACAGACTCGTTCTCAAAGTGGCGTTAGAGTCTGTTGGGTTTCTTTTGATACTAGTG
TTATGAGTCTTCCCGTTTAGGATTAATCGCTGATTTAAGAGAAGTATGACAAACGCGTGGCTTGC
ATTAGGTTAAGATCCGGGAGAGTCGAAGTAAAGTCAACAGAGAGTTGAATGTCGTAATGGCTGAA
AAAGTTTTAGAGGATGGATATTTCTATTCTCCAGTAAGACCACAA
Right flanking sequence: Indices 91189 -- 91688
GAATGAGGAATGCATTGGAGGCTGTCAGCGACTTAACGTCCTCTAACTATTGTACTTAGTGACAA
TGACGTTTGGTATCCACAGCGGGGAGCAAAACCAACAGAGGCTACTATGGTAAACGTCATGTGAG
AATAAATGTTGCAGTAATGTTGATTCATTTCACAAATTATAGTTCAGACGAAATATGCAACACTA
AAATTTTGACGGCCGCGGTAGTAAGTATGTTGAAAATTCTGCTTATCTATTCGCTTGTAAGATTC
TGTTACATTAATTACGAAAACCCTTATCATCACCTCGACTGCATATATTGCTCCTTGTAGCCGCT
AAAACCCATCAACCCCAGCGATTCGAAATCGTACGATTCCTAAACGTGGGGTCAAAGCAGCTACG
GGATTGTCCACGATTGACTTCCTGATCTCGAGGATGTTGAGACGGCCTTCTCCGTCGCATGTAGG
TATGGGCTCATTGACTCCCCGCGCCCCTATGCTTGCATCACGAGT
Found at i:101939 original size:15 final size:15
Alignment explanation
Indices: 101916--101945 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
101906 TAAAACCTTG
101916 CACCAAGTTGATCTT
1 CACCAAGTTGATCTT
*
101931 CACCGAGTTGATCTT
1 CACCAAGTTGATCTT
101946 GGAACCGTCG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.23, C:0.27, G:0.17, T:0.33
Consensus pattern (15 bp):
CACCAAGTTGATCTT
Left flanking sequence: Indices 101416 -- 101915
GCCAGCATCATTGACAGCCCCAGATCAACAACCAGTACGGCCAGAGGTGGCGACAGCGTCGTTTG
AATCAGAGAAGAACCATCAGATGACGAACTCTTGAGCCCCACATGTTTGAGAAGACTTTTGACCT
TGTGTTTTGTGCCACTCACCACCAGAGACAGCGGCAGCGTCACGGGAACCAAATCCAGCGATGCG
TCCAGTTCCAGCTCCAGCAGCAGATCGTCACGGAGAGCACCCTCTGGCACGTCCCCATCGTCATC
AGGGAAAAGGTATTGATGCAAAAGTTTCGCTGTGTTCATATCCAACTGCAACTTGAGTGGCTTAA
TGGCCACCTTGGCATTCTCAACAATGGGAATCCCACCGATGGGCTCCAATTTACGCCACAGAATA
TCCACAACAGGATGCTGGCGATGGTGATGATCATTTTGATCAGCTTCGGTATCGATGATTGGTTG
GAGCATTTCAGGGTATACCGCATTACTTTGAAGATTAAAACCTTG
Right flanking sequence: Indices 101946 -- 102445
GGAACCGTCGTAAGCGTCCCACTTATGGAAACGCAAATTGGATAGAGCAATATCCACGAAAGGGT
CACGATCAGGTCCGAGTACGTGCCAAATAATCTGGTCAGCTAAAAAGTCCCAAGCTTGGTGATTT
TTGGAGCGCTGGGCACCCAGGGGAGCTAAATTCAGCAACAGAATGCCCTTGATGATAGCATGCAA
CTCGATTTTTGATCTCGTGATTTCATATTCCAACGCAAGAGCCTCAATCTTCTCGTGGTGATCGA
GAGCCCGGGTGTCAAGCCTCATGAGGATGTTGCTATACTCGCGAAGCTTCTGCTGGAGCTCCAGT
ACTCTGATATCAAGTCCCTCAAAATCCAGACCATCAGCCAACAGAACAACTTTTTCCAAGCGATC
ATTGATCGCGTCCGTGGCATTCTTGGAGTGAATCAAAAGATCAGTGACCACATAAAATATAGTGG
TATACTGACGCAGAGTTGCGTTCAACACAATTTTAGCCAATTGGA
Found at i:142492 original size:17 final size:17
Alignment explanation
Indices: 142451--142534 Score: 95
Period size: 17 Copynumber: 5.2 Consensus size: 17
142441 TTGCTACTCA
*
142451 CGTTACACCGCTTCTCT
1 CGTTACACCGCTCCTCT
142468 CG-TACACCGCTCCTCT
1 CGTTACACCGCTCCTCT
*
142484 CGTTACACCGCTACTCT
1 CGTTACACCGCTCCTCT
* * *
142501 CCTAACACTGCT-CT-T
1 CGTTACACCGCTCCTCT
142516 C-TTACACCGCTCCTCT
1 CGTTACACCGCTCCTCT
142532 CGT
1 CGT
142535 ACTACCTCGT
Statistics
Matches: 56, Mismatches: 7, Indels: 8
0.79 0.10 0.11
Matches are distributed among these distances:
14 8 0.14
15 4 0.07
16 19 0.34
17 25 0.45
ACGTcount: A:0.14, C:0.44, G:0.11, T:0.31
Consensus pattern (17 bp):
CGTTACACCGCTCCTCT
Left flanking sequence: Indices 141951 -- 142450
GAGAAACCAGTGCGGCAAGAGCGCCCACCCTATCCAGGTGAGAAGACACGCCCCTGAAATGACAT
AGATGAAGAACCCCTTGTACTCAGCGTGTGGGGTAATGCTCAGCACGGTGACATCGGACTCACGA
GCTAACTTGTCCAGCGTGGCAATGTCCTTGGTTGTGGCGAGGTTGGAGGAGGAGGCCCATCCGGG
GCGACCAAGGGTGGCTCGTAGACTTAGAAATGACATGGTGGGGGTTTGTCCGGGTTTGTCCGTTG
CACTCGCTGAGCTGAAATGGTCGTTTCCGTCGCGGTGCGCGCAGGCAAGTGACGTGGACGAAAGG
TGAAGAATAGAGGAGGCAAACACAAGGGTGGTAGTGTATACCTGTAGTGTTGTAACTATAAACAA
GAACAATGCCCATCAATGGTTCCAATGGCGTACACTGGAACTCGAAAATCCCATCAACCATCTCA
ATCCAAGCGAACCAGGCACCGACTCAGCGTCGTGGTTGCTACTCA
Right flanking sequence: Indices 142535 -- 143034
ACTACCTCGTTTCTTTTATTTATCGTGATATGCTACACCAACTGCTTTCTCGAGCCCTTGAAGAA
CAACTGGACGATGGCAATCTGCAAACCAGCCATCCCCACCATCAACAACACCTCGAGCACCGAGA
AGTAGAAGATCCGCCCCTCGGTCGACCGCACGGTGGCCTCGTTCCGGTTGTTACGGGTCTTGTAG
TAGTTGACGGCGCGCTGCAACGCGTCCAACTGGGAGTCGATCTCCGCCACCGTCAGCTCCATCAG
GGTAACGTGCTTGATGGGCTTGGCGTTGGGCAGCAGCGGCATCTTGGCCGCGTACTGGTTCGACG
CGTCCGAGTCGTGGCTGATCTCAAAGTCAATGATCTTGTCGGCGTAGGACGACATGCCGTTCTTG
AAGCAGAACTCCCACTCGCCCACCTGGTCCGCCTTGAATTGGTAGTCGCCGTTGGACTCCTTGGT
CTTGGAGTATGCAATTTCTCCGTTGGGCTTCTTGATGGTGTAGTC
Found at i:142524 original size:31 final size:33
Alignment explanation
Indices: 142451--142532 Score: 98
Period size: 33 Copynumber: 2.5 Consensus size: 33
142441 TTGCTACTCA
* *
142451 CGTTACACCGCTTCTCTCGTACACCGCTCCTCT
1 CGTTACACCGCTACTCTCCTACACCGCTCCTCT
*
142484 CGTTACACCGCTACTCTCCTAACACTGCT-CT-T
1 CGTTACACCGCTACTCTCCT-ACACCGCTCCTCT
*
142516 C-TTACACCGCTCCTCTC
1 CGTTACACCGCTACTCTC
142533 GTACTACCTC
Statistics
Matches: 44, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
31 15 0.34
32 2 0.05
33 20 0.45
34 7 0.16
ACGTcount: A:0.15, C:0.45, G:0.10, T:0.30
Consensus pattern (33 bp):
CGTTACACCGCTACTCTCCTACACCGCTCCTCT
Left flanking sequence: Indices 141951 -- 142450
GAGAAACCAGTGCGGCAAGAGCGCCCACCCTATCCAGGTGAGAAGACACGCCCCTGAAATGACAT
AGATGAAGAACCCCTTGTACTCAGCGTGTGGGGTAATGCTCAGCACGGTGACATCGGACTCACGA
GCTAACTTGTCCAGCGTGGCAATGTCCTTGGTTGTGGCGAGGTTGGAGGAGGAGGCCCATCCGGG
GCGACCAAGGGTGGCTCGTAGACTTAGAAATGACATGGTGGGGGTTTGTCCGGGTTTGTCCGTTG
CACTCGCTGAGCTGAAATGGTCGTTTCCGTCGCGGTGCGCGCAGGCAAGTGACGTGGACGAAAGG
TGAAGAATAGAGGAGGCAAACACAAGGGTGGTAGTGTATACCTGTAGTGTTGTAACTATAAACAA
GAACAATGCCCATCAATGGTTCCAATGGCGTACACTGGAACTCGAAAATCCCATCAACCATCTCA
ATCCAAGCGAACCAGGCACCGACTCAGCGTCGTGGTTGCTACTCA
Right flanking sequence: Indices 142533 -- 143032
GTACTACCTCGTTTCTTTTATTTATCGTGATATGCTACACCAACTGCTTTCTCGAGCCCTTGAAG
AACAACTGGACGATGGCAATCTGCAAACCAGCCATCCCCACCATCAACAACACCTCGAGCACCGA
GAAGTAGAAGATCCGCCCCTCGGTCGACCGCACGGTGGCCTCGTTCCGGTTGTTACGGGTCTTGT
AGTAGTTGACGGCGCGCTGCAACGCGTCCAACTGGGAGTCGATCTCCGCCACCGTCAGCTCCATC
AGGGTAACGTGCTTGATGGGCTTGGCGTTGGGCAGCAGCGGCATCTTGGCCGCGTACTGGTTCGA
CGCGTCCGAGTCGTGGCTGATCTCAAAGTCAATGATCTTGTCGGCGTAGGACGACATGCCGTTCT
TGAAGCAGAACTCCCACTCGCCCACCTGGTCCGCCTTGAATTGGTAGTCGCCGTTGGACTCCTTG
GTCTTGGAGTATGCAATTTCTCCGTTGGGCTTCTTGATGGTGTAG
Found at i:143374 original size:14 final size:14
Alignment explanation
Indices: 143310--143373 Score: 101
Period size: 14 Copynumber: 4.6 Consensus size: 14
143300 GGTAGGACGG
* *
143310 GCAAGGAGCGAAGA
1 GCAAGGGGCGTAGA
143324 GCAAGGGGCGTAGA
1 GCAAGGGGCGTAGA
143338 GCAAGGGGCGTAGA
1 GCAAGGGGCGTAGA
*
143352 GCAAGGGGTGTAGA
1 GCAAGGGGCGTAGA
143366 GCAAGGGG
1 GCAAGGGG
143374 TAACGAGGTA
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 47 1.00
ACGTcount: A:0.31, C:0.12, G:0.50, T:0.06
Consensus pattern (14 bp):
GCAAGGGGCGTAGA
Left flanking sequence: Indices 142810 -- 143309
GGGCTTGGCGTTGGGCAGCAGCGGCATCTTGGCCGCGTACTGGTTCGACGCGTCCGAGTCGTGGC
TGATCTCAAAGTCAATGATCTTGTCGGCGTAGGACGACATGCCGTTCTTGAAGCAGAACTCCCAC
TCGCCCACCTGGTCCGCCTTGAATTGGTAGTCGCCGTTGGACTCCTTGGTCTTGGAGTATGCAAT
TTCTCCGTTGGGCTTCTTGATGGTGTAGTCAATGTCGAACGAGCCCCCGTTTTGCACGGCAAAGT
AGTAGCTGAACTGGGTGTTGGGGCGGTCGGTCATGGCGTACCAGCACACCGTCTCCGCCGCACGC
AACTGGAAGGTGAATGGCAGCGCCGCCACCGCGGCCAACATGTAGTAAACAAACCAAATCATAGC
CGGTCAGTGTCGTGTTCGTTGGCTTTTTTTTCACAACACGCGTGTGCACACTGGGCACGGGCGGG
GCTGCGAACGCGACCGCGTCGTAGCAAGGCGACGAGGTAGGACGG
Right flanking sequence: Indices 143374 -- 143873
TAACGAGGTAAGTAGGGCGACGAGGTAGACAAGAAGCGACGCAAGCTGAAGAAGGCAAAGTGGCG
CGGTGTTGGTGGTATGGACACCGAGGTTACGATTGTCTCGTATGAGAGGTCACTGCGTTTTCTCG
CTGTTAGTAGTATGGACACCGAGAATCGATTGTCTCGTCACTGCCTTTCCTAGCTGTTAATGGAT
GGACACCGAGGGCGATTGTCGTAACTCTACGTGCCTACACCCTTACTATATGCTCTCATGTATAA
TGTCTATGTACGGAGTTGGTTCAACATCGCCTGCGCCCGCAAGTAAAGCTGGTCGGTTTGCCCTT
CAGGCATCTCCGGGGGTTCTTCTTCTTCCGCCGTGGCCGGCACAGGCAGTGCCGTCGGCAAAGCG
TCCTTCGTTCGGCGTCTTGTCATTCTGCGTTTCAACTGGTTGACCAGATCGTACTCCTTGTCCTG
GTCGTCCTGGCGAAGCGCGGCGAGCTTGGACGCGAACGCGTCCTC
Found at i:146257 original size:33 final size:33
Alignment explanation
Indices: 146220--146282 Score: 108
Period size: 33 Copynumber: 1.9 Consensus size: 33
146210 GGGTTCCCAA
*
146220 CTGCTTTGGCGGCAGGGTTCCGACGGCCACCGT
1 CTGCTTTGGCGGCAGGGTTCCCACGGCCACCGT
*
146253 CTGCTTTGGTGGCAGGGTTCCCACGGCCAC
1 CTGCTTTGGCGGCAGGGTTCCCACGGCCAC
146283 GGACTTCGGT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
33 28 1.00
ACGTcount: A:0.10, C:0.33, G:0.35, T:0.22
Consensus pattern (33 bp):
CTGCTTTGGCGGCAGGGTTCCCACGGCCACCGT
Left flanking sequence: Indices 145720 -- 146219
GGAGGCGGTGGAGCCAGTGAGCCACCTAAGAAGCCGGGTACGGGCGGTGGAGGCGGTGGTGCACC
CGTCTGGCTCGTCTGGCTCGCGGCCTGACCTGCCTTTTCCTCCAAAAAGGACGGCATCGGTGGAG
GCGGCGGAGGTCCAGCCACAGTCTCCGTGGCGTCCGTCGCGTCGGTGGCTGCCAGGCCCGTCTCC
GTCAGCGTCGCCAGAGACCCCACGCTGGTGTCCAACGCCCGCCCGGCCTTCAGGATGGGCGACAT
GTCCACCGTCTGCGGCGACGCCGTGCCCGAGGTGTCCGCCTGCTTGATGGGCGACAACGCGATCT
CGGTGCGCACCGGGGGTGGAAGCTTGCCCGGCAGCCGGATCGCGCCCAGGTACTGCTTGGGCGGC
AGCGTCCCCACCGCCATCGAGTGGGTGACCTTCGGTGGCAGCGTGCCGACGGCCATCGAGTGTTT
GGACAGGGTGCCGATGGTCACGTGCTTGGGTTGCAGGGTTCCCAA
Right flanking sequence: Indices 146283 -- 146782
GGACTTCGGTGGCTGCGTCCCCGCCTGCTTCGGCGGCAGCGTGCCCACCGCCACCAGGTGCTTCA
CCGGCTCGGCCCGCGCCGGCTCCGGCAGCAGCAGCGGCAGCACGTCGACAAACTGGAACGAGTCG
TCGTGCGGGTTGTGCACCATGCGGCGGGTGCGGCGGCGCTTCTTGTTGTCGCGGCGCGGGTCGGC
GACGCTGTCGAGCCCGCTCGAGTCCGCCTCGCTGCCCACGTCGACAAACGGGTCCGACCCGCCGG
TGGAGGTGCCCGACAGCACCAAGATCGGCTGCGACGCCAGCCCCTTGCCGTCGTCGTCGTCGCTG
TCGGCGTCCTCCATGTTGTCGAGCATCAACAGCAACCGGTTGCGGGTTTCCAGCGGGTACTGGCG
CGCCAGCGGTGGCGCGTCGGGCTCGTCGTCCGACACCTCGTAGAACACGATGGGCTGGTTGAGCC
CGGGCGACCCGCGCGGCGACCCGGTGGGCAGCGACGTGCCCAACG
Found at i:147665 original size:12 final size:12
Alignment explanation
Indices: 147648--147699 Score: 77
Period size: 12 Copynumber: 4.1 Consensus size: 12
147638 CCTTCATGGA
147648 GTCGTGCTTCAT
1 GTCGTGCTTCAT
147660 GTCGTGCTTCAT
1 GTCGTGCTTCAT
147672 GTCGTGCTTCGAGCT
1 GTCGTGCTTC-A--T
147687 GTCGTGCTTCAT
1 GTCGTGCTTCAT
147699 G
1 G
147700 GTGTCGCGGA
Statistics
Matches: 37, Mismatches: 0, Indels: 6
0.86 0.00 0.14
Matches are distributed among these distances:
12 24 0.65
13 1 0.03
14 1 0.03
15 11 0.30
ACGTcount: A:0.08, C:0.25, G:0.29, T:0.38
Consensus pattern (12 bp):
GTCGTGCTTCAT
Left flanking sequence: Indices 147148 -- 147647
AACCGCGGCTGGTCGCGCCGCGTCGACCGCTCGGGCGGCTGGATCAGCTCGGGCAGCGCCACCAC
CAGCGGCGGCGACCACGGGTGCGCCGAGCCCGGCTCGTCGCTGGCGGCACTGGTGTCGATGTCGA
CAAAGTACGACGGCTGCCGCGACCGCAGCTCCGCCAGGTTGCGCCGCAGCAGTGCCCAGTCGGCG
TGTGGTGCCGGTGGCGGCTCCAACAGCTCGGGCACGTTCTCCACCAGCAGCAAGCTGTCGCGGTC
GGAGAGGAACCCGGGCACGGGCGGAGCTGGTGGCGCTGGGAGCGGCTTGTTGATGTGGCCGCGGC
GGCGGCGGCGCTTCTTGGGCTCCTCGGTGCTGGGTGTCTGGCTGAGGTTTTCCTGCAGCAGCACC
GCGTCGACAAACCGCAGGTCCAGCAGGTGGAACGACCCCACCAGCGCCACCCGCGGGTCGTCCAC
CACCCGGTGCGGCGCGCGCAACCCGTCGCGGGCCTCCTTCATGGA
Right flanking sequence: Indices 147700 -- 148199
GTGTCGCGGAGCACGTGGATGCCGTACTCGCGGGAACCCGTGGTGTCGGGCTGGTTTTCGAACGC
GGGCAGCTCCTTGAACTCGAACGGGTCGTCGAACTCGGGCAGGGCGGGCTGGTCTAGCGAGGAAG
GGTCTTTAAACTCCGCCCGCTCTTTGTACTCCGCCCGCTCTTTAAACTCCGGCTCCGACTCCTCG
AGCCCGTCCACCGTGAGCTCGCGCTCCTCGGCAATCGCCTTGTCAATAGTGGGCCGCCGGCCTAC
ACCCAAGCTGCGGGTGGCACTACGCGCACTAAACATCCGCTCCAACTCGTTGATAAAGTCCGCGC
TCACCGCAAACAGCGTGTCGCCCGTCAGCAGCGCCGTCTCCTGGGTGGCCATCAGGAACCGCTGC
GGCGGGTCGAGCGCGCGCGGGCCGTCCGCCAACATCCGCTGGTAGACGCTCTCGGTGTGGCACCC
GCGGTCGGTGATCTGGTACACCGCCAGGTCGACAAGCGCCAACTG
Found at i:147689 original size:27 final size:24
Alignment explanation
Indices: 147648--147699 Score: 77
Period size: 27 Copynumber: 2.0 Consensus size: 24
147638 CCTTCATGGA
147648 GTCGTGCTTCATGTCGTGCTTCAT
1 GTCGTGCTTCATGTCGTGCTTCAT
147672 GTCGTGCTTCGAGCTGTCGTGCTTCAT
1 GTCGTGCTTC-A--TGTCGTGCTTCAT
147699 G
1 G
147700 GTGTCGCGGA
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
24 10 0.40
25 1 0.04
27 14 0.56
ACGTcount: A:0.08, C:0.25, G:0.29, T:0.38
Consensus pattern (24 bp):
GTCGTGCTTCATGTCGTGCTTCAT
Left flanking sequence: Indices 147148 -- 147647
AACCGCGGCTGGTCGCGCCGCGTCGACCGCTCGGGCGGCTGGATCAGCTCGGGCAGCGCCACCAC
CAGCGGCGGCGACCACGGGTGCGCCGAGCCCGGCTCGTCGCTGGCGGCACTGGTGTCGATGTCGA
CAAAGTACGACGGCTGCCGCGACCGCAGCTCCGCCAGGTTGCGCCGCAGCAGTGCCCAGTCGGCG
TGTGGTGCCGGTGGCGGCTCCAACAGCTCGGGCACGTTCTCCACCAGCAGCAAGCTGTCGCGGTC
GGAGAGGAACCCGGGCACGGGCGGAGCTGGTGGCGCTGGGAGCGGCTTGTTGATGTGGCCGCGGC
GGCGGCGGCGCTTCTTGGGCTCCTCGGTGCTGGGTGTCTGGCTGAGGTTTTCCTGCAGCAGCACC
GCGTCGACAAACCGCAGGTCCAGCAGGTGGAACGACCCCACCAGCGCCACCCGCGGGTCGTCCAC
CACCCGGTGCGGCGCGCGCAACCCGTCGCGGGCCTCCTTCATGGA
Right flanking sequence: Indices 147700 -- 148199
GTGTCGCGGAGCACGTGGATGCCGTACTCGCGGGAACCCGTGGTGTCGGGCTGGTTTTCGAACGC
GGGCAGCTCCTTGAACTCGAACGGGTCGTCGAACTCGGGCAGGGCGGGCTGGTCTAGCGAGGAAG
GGTCTTTAAACTCCGCCCGCTCTTTGTACTCCGCCCGCTCTTTAAACTCCGGCTCCGACTCCTCG
AGCCCGTCCACCGTGAGCTCGCGCTCCTCGGCAATCGCCTTGTCAATAGTGGGCCGCCGGCCTAC
ACCCAAGCTGCGGGTGGCACTACGCGCACTAAACATCCGCTCCAACTCGTTGATAAAGTCCGCGC
TCACCGCAAACAGCGTGTCGCCCGTCAGCAGCGCCGTCTCCTGGGTGGCCATCAGGAACCGCTGC
GGCGGGTCGAGCGCGCGCGGGCCGTCCGCCAACATCCGCTGGTAGACGCTCTCGGTGTGGCACCC
GCGGTCGGTGATCTGGTACACCGCCAGGTCGACAAGCGCCAACTG
Found at i:147878 original size:18 final size:18
Alignment explanation
Indices: 147832--147880 Score: 80
Period size: 18 Copynumber: 2.7 Consensus size: 18
147822 CGAGGAAGGG
147832 TCTTTAAACTCCGCCCGC
1 TCTTTAAACTCCGCCCGC
**
147850 TCTTTGTACTCCGCCCGC
1 TCTTTAAACTCCGCCCGC
147868 TCTTTAAACTCCG
1 TCTTTAAACTCCG
147881 GCTCCGACTC
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 27 1.00
ACGTcount: A:0.14, C:0.41, G:0.12, T:0.33
Consensus pattern (18 bp):
TCTTTAAACTCCGCCCGC
Left flanking sequence: Indices 147332 -- 147831
CCCAGTCGGCGTGTGGTGCCGGTGGCGGCTCCAACAGCTCGGGCACGTTCTCCACCAGCAGCAAG
CTGTCGCGGTCGGAGAGGAACCCGGGCACGGGCGGAGCTGGTGGCGCTGGGAGCGGCTTGTTGAT
GTGGCCGCGGCGGCGGCGGCGCTTCTTGGGCTCCTCGGTGCTGGGTGTCTGGCTGAGGTTTTCCT
GCAGCAGCACCGCGTCGACAAACCGCAGGTCCAGCAGGTGGAACGACCCCACCAGCGCCACCCGC
GGGTCGTCCACCACCCGGTGCGGCGCGCGCAACCCGTCGCGGGCCTCCTTCATGGAGTCGTGCTT
CATGTCGTGCTTCATGTCGTGCTTCGAGCTGTCGTGCTTCATGGTGTCGCGGAGCACGTGGATGC
CGTACTCGCGGGAACCCGTGGTGTCGGGCTGGTTTTCGAACGCGGGCAGCTCCTTGAACTCGAAC
GGGTCGTCGAACTCGGGCAGGGCGGGCTGGTCTAGCGAGGAAGGG
Right flanking sequence: Indices 147881 -- 148380
GCTCCGACTCCTCGAGCCCGTCCACCGTGAGCTCGCGCTCCTCGGCAATCGCCTTGTCAATAGTG
GGCCGCCGGCCTACACCCAAGCTGCGGGTGGCACTACGCGCACTAAACATCCGCTCCAACTCGTT
GATAAAGTCCGCGCTCACCGCAAACAGCGTGTCGCCCGTCAGCAGCGCCGTCTCCTGGGTGGCCA
TCAGGAACCGCTGCGGCGGGTCGAGCGCGCGCGGGCCGTCCGCCAACATCCGCTGGTAGACGCTC
TCGGTGTGGCACCCGCGGTCGGTGATCTGGTACACCGCCAGGTCGACAAGCGCCAACTGGCGGGC
GAGCGCCTGCTCGGACCACCCGGCCCGGGTCAACGCCGCCACCAGGTCAAACACCGCGCGCAAAA
AGTCGTCGTCGTCGCCGGAAAAGTCGCCGTGGGTGCGCTGGAACGTCTGGCGGATCACCAACTTG
AAGCGGTCGTCCAACACCGTCAGCGCCTGCGACACCGCCGCCAGC
Found at i:150675 original size:9 final size:9
Alignment explanation
Indices: 150661--150691 Score: 62
Period size: 9 Copynumber: 3.4 Consensus size: 9
150651 AATGTGCGTA
150661 GTAGGTGCG
1 GTAGGTGCG
150670 GTAGGTGCG
1 GTAGGTGCG
150679 GTAGGTGCG
1 GTAGGTGCG
150688 GTAG
1 GTAG
150692 TAGGTGCGAG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 22 1.00
ACGTcount: A:0.13, C:0.10, G:0.55, T:0.23
Consensus pattern (9 bp):
GTAGGTGCG
Left flanking sequence: Indices 150161 -- 150660
TGGGCTTCTGCAGCGACGGGGCCGTGTCGTACCCTAGTGCCGCAAACTGGGCGTCGTCGTCGCCA
GCCGCCATCTGGTGGAAGTTGATGATCGACGCCGACTTGCCAAGCCGTTTTATCCCCTTGGAAAA
CGCCGATTTTCGAGACCCGCGTTCTTCCATGCTATGCGAGGGTATGCGAAACGACGGTTGAGGGT
GGGGGGCGTGTGGGGTAGGAGAAGAGGCGGATCAAACTCGGTTTCGGTGTCGTGTTTGGTATCAT
TCAATATTTGTGCGCACCCGCGGGTGGGGCTCGTAACCGCGCGTAGCAAGAGTGGTGGCCGCGAG
CGGTGGAGGAGCGGGTTGACGGTGGTGGGGGCGGGGGGGTGTTGGTGGTGGTCTAGGTGGTGTGT
TCCGGCGGATTTTAGTTCTGCTGTTTACGCTGTTTTTGTGTTCCGGCTCGTGGCCGGGGTAGGTT
AGTTGTCGATCATCTGTGGGGGATGAGCATATGAGAATGTGCGTA
Right flanking sequence: Indices 150692 -- 151191
TAGGTGCGAGTAGTTGCAGTGCTGGCAGTGACAGACACTCCGACATATCCCGGGGAATCCCAGAG
TGCGCGGCTCAGGCGCTCGCTGTTGACCGATCATACAGAACACGTTTGTAGGGAGGCGCCGGGCC
GTATAGAGCAGGCGTGTAGAGTAGGTGGGTGGTGAGTAGAGTAGGTGGGTAGGGTACGTAGATGG
TAGAAACACTAGGTACTGCTGGCTGCGGGTGCGGTTGACCTATGTGTCTACAGTCCGGCTAGACC
TGCCTTGTATCTGGGTGTGCCTGGTTAGTAGCCGCGGTCTTTATCCGTTGAAGGCTTGCACTATT
TTAGTCGAGATTGTCCGTATGGGGAAGGCGGACGCATGGCTGACCCGCCTCGGGTTTCATTCTAC
CTGCCTTCAACAAGGTGGCCATCCAGCTCCGCAGCTCGATACTCGGTACCTCGCAGGCTCCGATG
GAGGTTGTCCAGGCTTGTGCTCGCCTCGTAAGTTAAATCCGCTTA
Found at i:151905 original size:12 final size:12
Alignment explanation
Indices: 151888--151939 Score: 77
Period size: 12 Copynumber: 4.3 Consensus size: 12
151878 TCAAAACCAA
151888 ACCAGTGGCAGC
1 ACCAGTGGCAGC
151900 ACCAGTGGCAGC
1 ACCAGTGGCAGC
**
151912 ACCAACGGCAGC
1 ACCAGTGGCAGC
*
151924 ACAAGTGGCAGC
1 ACCAGTGGCAGC
151936 ACCA
1 ACCA
151940 ACGGCGGAAA
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
12 34 1.00
ACGTcount: A:0.31, C:0.35, G:0.29, T:0.06
Consensus pattern (12 bp):
ACCAGTGGCAGC
Left flanking sequence: Indices 151388 -- 151887
GAGAGCTCGTCATGTCATCGTGCTTGACATTCTCTTGTGATTTGTTTTAGGTTGGTTTGGTCGCA
AACAATCGGGTTTCCGAGTATAATTGCAAAACTTGTAGCGAAAATGTAGTGCGTCTTCAATGCTG
GAAGAAGAGATGATGGCGTACTATAATTACTCTATTGTTCCGAATAGGTTTACATTATACTCCAC
GCCATTGATCGCCTCTGTTGCAATCCAGCTGCTCCTACGGTACACGTCAACCGAACGCTGAGCAG
TGCTTCAAGATACATGAAATTATTTACAGACACGGACGACAGTTGTCATCATGCCACGTATCTAC
CTCAACACTCGAGCCCTGGACTTATTTCATCTGGCATCAAATAAGCCCAAACTGGAGAACACCCC
ATACAGCTGTTAAATTTGGATGTTCTGCCAAATAGTTTATGACACATGTCTAGACGATCAAGTCC
TGCATTCTACATGTTTTGATCACACAGAACAAGGATCAAAACCAA
Right flanking sequence: Indices 151940 -- 152439
ACGGCGGAAATCTCTTGTTATATCTTGGTTGTTTTAGCCAGCGACCAGCGTGTGTGGACTTTCCA
GTTTCTTGATCACAGCTTTTTTCGCACGGCCACTCTGAGCAATTACACGCGATCCCACGAACTTC
TAGCGCTTTTCTTACCCTCGCACTAAACTTCGCGCGAAGGAATTTTGTTTACCATGTCTGCTACA
CGCCAACTGCTGCTACAAGACTTCTTCAGCATAAAAAAAGCAGTGACCGCCCCCAAAAAGGAGGT
CAAAAAGGAAACAGTGGTCATTGATCTCGATAAAGACTACGATGTGGCCAAACCAGCGTCGCAAC
CGCTTCCAAAACGCGTCCTTCTGTCGCCGCGACGCGTCACCAAGGTCAGCCGCACCAGCAGTATG
CTAATGCTGGGCCTGTTCGAAGGGTTTGACGACGACGGCCCGCTGCTGCTGGATGCTTACGACAC
GCTGATAGAGGTGTTGAACTATAGCAACGACCATCTCGCCGCCTG
Found at i:151921 original size:24 final size:24
Alignment explanation
Indices: 151894--151944 Score: 93
Period size: 24 Copynumber: 2.1 Consensus size: 24
151884 CCAAACCAGT
*
151894 GGCAGCACCAGTGGCAGCACCAAC
1 GGCAGCACAAGTGGCAGCACCAAC
151918 GGCAGCACAAGTGGCAGCACCAAC
1 GGCAGCACAAGTGGCAGCACCAAC
151942 GGC
1 GGC
151945 GGAAATCTCT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.29, C:0.35, G:0.31, T:0.04
Consensus pattern (24 bp):
GGCAGCACAAGTGGCAGCACCAAC
Left flanking sequence: Indices 151394 -- 151893
TCGTCATGTCATCGTGCTTGACATTCTCTTGTGATTTGTTTTAGGTTGGTTTGGTCGCAAACAAT
CGGGTTTCCGAGTATAATTGCAAAACTTGTAGCGAAAATGTAGTGCGTCTTCAATGCTGGAAGAA
GAGATGATGGCGTACTATAATTACTCTATTGTTCCGAATAGGTTTACATTATACTCCACGCCATT
GATCGCCTCTGTTGCAATCCAGCTGCTCCTACGGTACACGTCAACCGAACGCTGAGCAGTGCTTC
AAGATACATGAAATTATTTACAGACACGGACGACAGTTGTCATCATGCCACGTATCTACCTCAAC
ACTCGAGCCCTGGACTTATTTCATCTGGCATCAAATAAGCCCAAACTGGAGAACACCCCATACAG
CTGTTAAATTTGGATGTTCTGCCAAATAGTTTATGACACATGTCTAGACGATCAAGTCCTGCATT
CTACATGTTTTGATCACACAGAACAAGGATCAAAACCAAACCAGT
Right flanking sequence: Indices 151945 -- 152444
GGAAATCTCTTGTTATATCTTGGTTGTTTTAGCCAGCGACCAGCGTGTGTGGACTTTCCAGTTTC
TTGATCACAGCTTTTTTCGCACGGCCACTCTGAGCAATTACACGCGATCCCACGAACTTCTAGCG
CTTTTCTTACCCTCGCACTAAACTTCGCGCGAAGGAATTTTGTTTACCATGTCTGCTACACGCCA
ACTGCTGCTACAAGACTTCTTCAGCATAAAAAAAGCAGTGACCGCCCCCAAAAAGGAGGTCAAAA
AGGAAACAGTGGTCATTGATCTCGATAAAGACTACGATGTGGCCAAACCAGCGTCGCAACCGCTT
CCAAAACGCGTCCTTCTGTCGCCGCGACGCGTCACCAAGGTCAGCCGCACCAGCAGTATGCTAAT
GCTGGGCCTGTTCGAAGGGTTTGACGACGACGGCCCGCTGCTGCTGGATGCTTACGACACGCTGA
TAGAGGTGTTGAACTATAGCAACGACCATCTCGCCGCCTGGGCGG
Found at i:156535 original size:51 final size:52
Alignment explanation
Indices: 156396--156550 Score: 145
Period size: 51 Copynumber: 3.0 Consensus size: 52
156386 TAGCAGTAGT
* * * *
156396 GAGCCCGAGCCCGAGCCCACTACTGAGTCTGAGGTACCCTTGCCTCCCACCA
1 GAGCCTGAACCCGAGCCCACTACTGAATCTGAGGTACCCTTGCCTTCCACCA
** * * * * *
156448 GTGAGCCTGAACAAGAACCCACTA-TCGAGA-CCGAGGTGCCTTTGCCTTCTACC-
1 --GAGCCTGAACCCGAGCCCACTACT-GA-ATCTGAGGTACCCTTGCCTTCCACCA
*
156501 GAGCCTGAACCCGAGCCCACTACTGAATCTGAGGTCCCCTTGCCTTCCAC
1 GAGCCTGAACCCGAGCCCACTACTGAATCTGAGGTACCCTTGCCTTCCAC
156551 GAGCGTGCCT
Statistics
Matches: 79, Mismatches: 18, Indels: 11
0.73 0.17 0.10
Matches are distributed among these distances:
50 1 0.01
51 39 0.49
52 1 0.01
53 1 0.01
54 37 0.47
ACGTcount: A:0.21, C:0.38, G:0.22, T:0.19
Consensus pattern (52 bp):
GAGCCTGAACCCGAGCCCACTACTGAATCTGAGGTACCCTTGCCTTCCACCA
Left flanking sequence: Indices 155896 -- 156395
TGAATGCCGATTCCGACGGTAACGGAAATGCCCAAAAGGTCATCACTTCTACGTGGACTGGTACG
ACTACTATGGTTACTACGTTGAACCCAGCACCTTCTGGGGCCATTGGTGTCACCGAAACTGTTAT
CGTCAACGTGCCTGGGCCCAGTACTGCTGAGTCCACCACGACCACTTCTTCGACGACTACCACCA
CTCCCACTCCCGAACCGACCACCAGTGCCTCGCCCACCCCCTTGTCCAGCAGCACGCCCCCTCCC
ACTACCTCAAGCCTGAGCTCGACTACCTCGTCTACCACTTCTTCGACTACTTCTTCGTCGACCAC
TTCTCTCCCTAAACCGACCACCACTTCGGTCGTGCCCACAACTTCCCTGAGCTCGTCTCAGTCCG
CCACTTCTCACACTAGCTCCGAGCTGTGTATTTCGGTTACCGTTACTGAAGTTGTGACCCCCACG
GTTACTGAAACCGTGTTCCCCACTCTCCTGCCTTCTAGCAGTAGT
Right flanking sequence: Indices 156551 -- 157050
GAGCGTGCCTGCTCCTGAACCCGAACCTACCACTGAATCCGAAGTGCCGTTGCCTTCTTCCAGTG
AAACCGTGCCTGAGCCCGAACCTACCACTGTAACCGAGGTACCTTTGCCTTCTACCAGCGTGCCC
GTGCCTGAGCCCGAGCCCACTACGGTGACCGAGGTGCCCTTGCCGTCGGAGAGTGTTCCTGTCCC
CGAACCTGAACCCACTACCGAGACCGAGGTTCCTTTGCCTTCCACCAGCGTGCCCGTGCCCGAGC
CTGAGCCCACTACTGTGACAGAGGTGCCCTTGCCCTCTGAAAGTGAGCCTGTCCCCGAACCCGAG
CCCACTACCGAGGCCGAGGTCCCCTTGCCTTCCACTAGTGCACATGTGCCTGAGCCTGAACCTAC
TACGAAGACTGAAGTGCCCTTACCTTCTGAGAGTGTACCCGCCCCCGAGCCCGAGCAGCCCGAGC
CCACACCTGAGCCTGAGCAGCCGAAGCCTGAGCCCGAGCAGCCCG
Found at i:156683 original size:60 final size:60
Alignment explanation
Indices: 156503--156694 Score: 181
Period size: 60 Copynumber: 3.2 Consensus size: 60
156493 CTTCTACCGA
* * * * * * * * *
156503 GCCTGAACCCGAGCCCACTACTGAATCTGAGGTCCCCTTGCCTTCCACGAGCGTGCCTGCT
1 GCCTGAGCCCGAACCTACCACTGAATCCGAGGTACCCTTGCCTTCTACCAGCGTGCCCG-T
* * * * * * ***
156564 -CCTGAACCCGAACCTACCACTGAATCCGAAGTGCCGTTGCCTTCTTCCAGTGAAACCGT
1 GCCTGAGCCCGAACCTACCACTGAATCCGAGGTACCCTTGCCTTCTACCAGCGTGCCCGT
*
156623 GCCTGAGCCCGAACCTACCACTGTAA-CCGAGGTACCTTTGCCTTCTACCAGCGTGCCCGT
1 GCCTGAGCCCGAACCTACCACTG-AATCCGAGGTACCCTTGCCTTCTACCAGCGTGCCCGT
156683 GCCTGAGCCCGA
1 GCCTGAGCCCGA
156695 GCCCACTACG
Statistics
Matches: 105, Mismatches: 24, Indels: 5
0.78 0.18 0.04
Matches are distributed among these distances:
59 1 0.01
60 102 0.97
61 2 0.02
ACGTcount: A:0.19, C:0.38, G:0.22, T:0.21
Consensus pattern (60 bp):
GCCTGAGCCCGAACCTACCACTGAATCCGAGGTACCCTTGCCTTCTACCAGCGTGCCCGT
Left flanking sequence: Indices 156003 -- 156502
ATTGGTGTCACCGAAACTGTTATCGTCAACGTGCCTGGGCCCAGTACTGCTGAGTCCACCACGAC
CACTTCTTCGACGACTACCACCACTCCCACTCCCGAACCGACCACCAGTGCCTCGCCCACCCCCT
TGTCCAGCAGCACGCCCCCTCCCACTACCTCAAGCCTGAGCTCGACTACCTCGTCTACCACTTCT
TCGACTACTTCTTCGTCGACCACTTCTCTCCCTAAACCGACCACCACTTCGGTCGTGCCCACAAC
TTCCCTGAGCTCGTCTCAGTCCGCCACTTCTCACACTAGCTCCGAGCTGTGTATTTCGGTTACCG
TTACTGAAGTTGTGACCCCCACGGTTACTGAAACCGTGTTCCCCACTCTCCTGCCTTCTAGCAGT
AGTGAGCCCGAGCCCGAGCCCACTACTGAGTCTGAGGTACCCTTGCCTCCCACCAGTGAGCCTGA
ACAAGAACCCACTATCGAGACCGAGGTGCCTTTGCCTTCTACCGA
Right flanking sequence: Indices 156695 -- 157194
GCCCACTACGGTGACCGAGGTGCCCTTGCCGTCGGAGAGTGTTCCTGTCCCCGAACCTGAACCCA
CTACCGAGACCGAGGTTCCTTTGCCTTCCACCAGCGTGCCCGTGCCCGAGCCTGAGCCCACTACT
GTGACAGAGGTGCCCTTGCCCTCTGAAAGTGAGCCTGTCCCCGAACCCGAGCCCACTACCGAGGC
CGAGGTCCCCTTGCCTTCCACTAGTGCACATGTGCCTGAGCCTGAACCTACTACGAAGACTGAAG
TGCCCTTACCTTCTGAGAGTGTACCCGCCCCCGAGCCCGAGCAGCCCGAGCCCACACCTGAGCCT
GAGCAGCCGAAGCCTGAGCCCGAGCAGCCCGAGCCCACACCTGAGCCTGAGCAGCCGAAGCCTGA
GCCCGAGCAGCCCGAGCCCACGCCCGAGCCTGAGCAGCCGAAGCCCGAGCCCGAGCAGCCCCAGC
CCGAGCCTGAGCAGCCGAAGCCTGAGCCCGAGCAGCCCAAGCCCG
Found at i:156712 original size:60 final size:60
Alignment explanation
Indices: 156531--156844 Score: 204
Period size: 60 Copynumber: 5.2 Consensus size: 60
156521 TACTGAATCT
* * * * * *
156531 GAGGTCCCCTTGCCTTCCACGAGCGTG-CC-TGCTCCTGAACCCGAACCTACCACTG-AATCC
1 GAGGTGCCCTTGCCTTCCACCAGCGTGCCCGTGC-CC-GAGCCCGAACCCACTACTGTGA-CC
* * ** * *** * * * *
156591 GAAGTGCCGTTGCCTTCTTCCAGTGAAACCGTGCCTGAGCCCGAACCTACCACTGTAACC
1 GAGGTGCCCTTGCCTTCCACCAGCGTGCCCGTGCCCGAGCCCGAACCCACTACTGTGACC
* * * * * *
156651 GAGGTACCTTTGCCTTCTACCAGCGTGCCCGTGCCTGAGCCCGAGCCCACTACGGTGACC
1 GAGGTGCCCTTGCCTTCCACCAGCGTGCCCGTGCCCGAGCCCGAACCCACTACTGTGACC
* * * * * * * * * * *
156711 GAGGTGCCCTTGCCGTCGGA-GAGTGTTCCTGTCCCCGAACCTGAACCCACTACCGAGACC
1 GAGGTGCCCTTGCCTTC-CACCAGCGTGCCCGTGCCCGAGCCCGAACCCACTACTGTGACC
* * * * *
156771 GAGGTTCCTTTGCCTTCCACCAGCGTGCCCGTGCCCGAGCCTGAGCCCACTACTGTGACA
1 GAGGTGCCCTTGCCTTCCACCAGCGTGCCCGTGCCCGAGCCCGAACCCACTACTGTGACC
156831 GAGGTGCCCTTGCC
1 GAGGTGCCCTTGCC
156845 CTCTGAAAGT
Statistics
Matches: 194, Mismatches: 55, Indels: 10
0.75 0.21 0.04
Matches are distributed among these distances:
59 1 0.01
60 184 0.95
61 6 0.03
62 3 0.02
ACGTcount: A:0.17, C:0.38, G:0.25, T:0.20
Consensus pattern (60 bp):
GAGGTGCCCTTGCCTTCCACCAGCGTGCCCGTGCCCGAGCCCGAACCCACTACTGTGACC
Left flanking sequence: Indices 156031 -- 156530
ACGTGCCTGGGCCCAGTACTGCTGAGTCCACCACGACCACTTCTTCGACGACTACCACCACTCCC
ACTCCCGAACCGACCACCAGTGCCTCGCCCACCCCCTTGTCCAGCAGCACGCCCCCTCCCACTAC
CTCAAGCCTGAGCTCGACTACCTCGTCTACCACTTCTTCGACTACTTCTTCGTCGACCACTTCTC
TCCCTAAACCGACCACCACTTCGGTCGTGCCCACAACTTCCCTGAGCTCGTCTCAGTCCGCCACT
TCTCACACTAGCTCCGAGCTGTGTATTTCGGTTACCGTTACTGAAGTTGTGACCCCCACGGTTAC
TGAAACCGTGTTCCCCACTCTCCTGCCTTCTAGCAGTAGTGAGCCCGAGCCCGAGCCCACTACTG
AGTCTGAGGTACCCTTGCCTCCCACCAGTGAGCCTGAACAAGAACCCACTATCGAGACCGAGGTG
CCTTTGCCTTCTACCGAGCCTGAACCCGAGCCCACTACTGAATCT
Right flanking sequence: Indices 156845 -- 157344
CTCTGAAAGTGAGCCTGTCCCCGAACCCGAGCCCACTACCGAGGCCGAGGTCCCCTTGCCTTCCA
CTAGTGCACATGTGCCTGAGCCTGAACCTACTACGAAGACTGAAGTGCCCTTACCTTCTGAGAGT
GTACCCGCCCCCGAGCCCGAGCAGCCCGAGCCCACACCTGAGCCTGAGCAGCCGAAGCCTGAGCC
CGAGCAGCCCGAGCCCACACCTGAGCCTGAGCAGCCGAAGCCTGAGCCCGAGCAGCCCGAGCCCA
CGCCCGAGCCTGAGCAGCCGAAGCCCGAGCCCGAGCAGCCCCAGCCCGAGCCTGAGCAGCCGAAG
CCTGAGCCCGAGCAGCCCAAGCCCGAGCCCGAGCAACCTCAACCGGAGCCCGAAGTTACCAACAC
GTTAACGGTCACTATCCACCCTCCCATTGAGACTGAGCTCCCTCCCCCTGTGAACACCGTCCCCG
AGGCCCCGGCTCCGGAGGTGCCAGAACAAACCGTTGTTCCTGGCG
Found at i:156868 original size:60 final size:59
Alignment explanation
Indices: 156690--156904 Score: 196
Period size: 60 Copynumber: 3.6 Consensus size: 59
156680 CGTGCCTGAG
* * * *
156690 CCCGAGCCCACTACGGTGACCGAGGTGCCCTTGCCGTCGGAGAGTGTTCCTGTCCCCGAA
1 CCCGAGCCCACTACCGTGACCGAGGTGCCCTTGCCCTC-GAAAGTGTGCCTGTCCCCGAA
* * * * * * * * * * * *
156750 CCTGAACCCACTACCGAGACCGAGGTTCCTTTGCCTTCCACCAGCGTGCCCGTGCCCGAG
1 CCCGAGCCCACTACCGTGACCGAGGTGCCCTTGCCCTCGA-AAGTGTGCCTGTCCCCGAA
* * * *
156810 CCTGAGCCCACTACTGTGACAGAGGTGCCCTTGCCCTCTGAAAGTGAGCCTGTCCCCGAA
1 CCCGAGCCCACTACCGTGACCGAGGTGCCCTTGCCCTC-GAAAGTGTGCCTGTCCCCGAA
* * *
156870 CCCGAGCCCACTACCGAGGCCGAGGTCCCCTTGCC
1 CCCGAGCCCACTACCGTGACCGAGGTGCCCTTGCC
156905 TTCCACTAGT
Statistics
Matches: 119, Mismatches: 34, Indels: 4
0.76 0.22 0.03
Matches are distributed among these distances:
59 1 0.01
60 117 0.98
61 1 0.01
ACGTcount: A:0.17, C:0.40, G:0.26, T:0.18
Consensus pattern (59 bp):
CCCGAGCCCACTACCGTGACCGAGGTGCCCTTGCCCTCGAAAGTGTGCCTGTCCCCGAA
Left flanking sequence: Indices 156190 -- 156689
CCACTTCTTCGACTACTTCTTCGTCGACCACTTCTCTCCCTAAACCGACCACCACTTCGGTCGTG
CCCACAACTTCCCTGAGCTCGTCTCAGTCCGCCACTTCTCACACTAGCTCCGAGCTGTGTATTTC
GGTTACCGTTACTGAAGTTGTGACCCCCACGGTTACTGAAACCGTGTTCCCCACTCTCCTGCCTT
CTAGCAGTAGTGAGCCCGAGCCCGAGCCCACTACTGAGTCTGAGGTACCCTTGCCTCCCACCAGT
GAGCCTGAACAAGAACCCACTATCGAGACCGAGGTGCCTTTGCCTTCTACCGAGCCTGAACCCGA
GCCCACTACTGAATCTGAGGTCCCCTTGCCTTCCACGAGCGTGCCTGCTCCTGAACCCGAACCTA
CCACTGAATCCGAAGTGCCGTTGCCTTCTTCCAGTGAAACCGTGCCTGAGCCCGAACCTACCACT
GTAACCGAGGTACCTTTGCCTTCTACCAGCGTGCCCGTGCCTGAG
Right flanking sequence: Indices 156905 -- 157404
TTCCACTAGTGCACATGTGCCTGAGCCTGAACCTACTACGAAGACTGAAGTGCCCTTACCTTCTG
AGAGTGTACCCGCCCCCGAGCCCGAGCAGCCCGAGCCCACACCTGAGCCTGAGCAGCCGAAGCCT
GAGCCCGAGCAGCCCGAGCCCACACCTGAGCCTGAGCAGCCGAAGCCTGAGCCCGAGCAGCCCGA
GCCCACGCCCGAGCCTGAGCAGCCGAAGCCCGAGCCCGAGCAGCCCCAGCCCGAGCCTGAGCAGC
CGAAGCCTGAGCCCGAGCAGCCCAAGCCCGAGCCCGAGCAACCTCAACCGGAGCCCGAAGTTACC
AACACGTTAACGGTCACTATCCACCCTCCCATTGAGACTGAGCTCCCTCCCCCTGTGAACACCGT
CCCCGAGGCCCCGGCTCCGGAGGTGCCAGAACAAACCGTTGTTCCTGGCGAACCGCCGGTGAGCC
CCGAGGTGCCACCCATGGAGGAAGCACCTGCTCCTGAGCCTGAAC
Found at i:156987 original size:120 final size:118
Alignment explanation
Indices: 156648--156996 Score: 369
Period size: 120 Copynumber: 2.9 Consensus size: 118
156638 TACCACTGTA
* * * * *
156648 ACCGAGGTACCTTTGCCTTCTACCAGCGTGCCCGTGCCTGAGCCCGAGCCCACTACGGTGACCGA
1 ACCGAGGTCCCCTTGCCTTCCACCA-CGTGCCCGTGCCTGAGCCTGAGCCCACTAC-GTGACAGA
* * * * *
156713 GGTGCCCTTGCCGTCGGAGAGTGTTCCTGTCCCCGAACCTGAACCCACTACCGAG
64 GGTGCCCTTGCCCTCTGAGAGTGTACCTGTCCCCGAACCCGAGCCCACTACCGAG
* * *
156768 ACCGAGGTTCCTTTGCCTTCCACCAGCGTGCCCGTGCCCGAGCCTGAGCCCACTACTGTGACAGA
1 ACCGAGGTCCCCTTGCCTTCCACCA-CGTGCCCGTGCCTGAGCCTGAGCCCACTAC-GTGACAGA
*
156833 GGTGCCCTTGCCCTCTGAAAGTG-AGCCTGTCCCCGAACCCGAGCCCACTACCGAG
64 GGTGCCCTTGCCCTCTGAGAGTGTA-CCTGTCCCCGAACCCGAGCCCACTACCGAG
* * * * * * *
156888 GCCGAGGTCCCCTTGCCTTCCACTA-GTGCACATGTGCCTGAGCCTGAACCTACTACGAAGACTG
1 ACCGAGGTCCCCTTGCCTTCCACCACGTGC-C-CGTGCCTGAGCCTGAGCCCACTACG-TGACAG
* * * * * *
156952 AAGTGCCCTTACCTTCTGAGAGTGTACCCGCCCCCGAGCCCGAGC
63 AGGTGCCCTTGCCCTCTGAGAGTGTACCTGTCCCCGAACCCGAGC
156997 AGCCCGAGCC
Statistics
Matches: 195, Mismatches: 29, Indels: 10
0.83 0.12 0.04
Matches are distributed among these distances:
118 4 0.02
119 2 0.01
120 188 0.96
121 1 0.01
ACGTcount: A:0.18, C:0.38, G:0.25, T:0.19
Consensus pattern (118 bp):
ACCGAGGTCCCCTTGCCTTCCACCACGTGCCCGTGCCTGAGCCTGAGCCCACTACGTGACAGAGG
TGCCCTTGCCCTCTGAGAGTGTACCTGTCCCCGAACCCGAGCCCACTACCGAG
Left flanking sequence: Indices 156148 -- 156647
CCCCTCCCACTACCTCAAGCCTGAGCTCGACTACCTCGTCTACCACTTCTTCGACTACTTCTTCG
TCGACCACTTCTCTCCCTAAACCGACCACCACTTCGGTCGTGCCCACAACTTCCCTGAGCTCGTC
TCAGTCCGCCACTTCTCACACTAGCTCCGAGCTGTGTATTTCGGTTACCGTTACTGAAGTTGTGA
CCCCCACGGTTACTGAAACCGTGTTCCCCACTCTCCTGCCTTCTAGCAGTAGTGAGCCCGAGCCC
GAGCCCACTACTGAGTCTGAGGTACCCTTGCCTCCCACCAGTGAGCCTGAACAAGAACCCACTAT
CGAGACCGAGGTGCCTTTGCCTTCTACCGAGCCTGAACCCGAGCCCACTACTGAATCTGAGGTCC
CCTTGCCTTCCACGAGCGTGCCTGCTCCTGAACCCGAACCTACCACTGAATCCGAAGTGCCGTTG
CCTTCTTCCAGTGAAACCGTGCCTGAGCCCGAACCTACCACTGTA
Right flanking sequence: Indices 156997 -- 157496
AGCCCGAGCCCACACCTGAGCCTGAGCAGCCGAAGCCTGAGCCCGAGCAGCCCGAGCCCACACCT
GAGCCTGAGCAGCCGAAGCCTGAGCCCGAGCAGCCCGAGCCCACGCCCGAGCCTGAGCAGCCGAA
GCCCGAGCCCGAGCAGCCCCAGCCCGAGCCTGAGCAGCCGAAGCCTGAGCCCGAGCAGCCCAAGC
CCGAGCCCGAGCAACCTCAACCGGAGCCCGAAGTTACCAACACGTTAACGGTCACTATCCACCCT
CCCATTGAGACTGAGCTCCCTCCCCCTGTGAACACCGTCCCCGAGGCCCCGGCTCCGGAGGTGCC
AGAACAAACCGTTGTTCCTGGCGAACCGCCGGTGAGCCCCGAGGTGCCACCCATGGAGGAAGCAC
CTGCTCCTGAGCCTGAACAGCCCACATTTGTGCCGTCCGCTCCTGCTCCGAGCAACCCTGTGGAG
ATTCCCGAGTACACTGGTATGGCAAACATGAAGTCGACCAACGTT
Found at i:157017 original size:21 final size:21
Alignment explanation
Indices: 156993--157065 Score: 51
Period size: 21 Copynumber: 3.2 Consensus size: 21
156983 CCCCGAGCCC
156993 GAGCAGCCCGAGCCCACACCT
1 GAGCAGCCCGAGCCCACACCT
*
157014 GAGCCTGAGCAGCCGAAGCCTGAGC-CC-
1 GAG-C--AGC--CCG-AGCC-CA-CACCT
157041 GAGCAGCCCGAGCCCACACCT
1 GAGCAGCCCGAGCCCACACCT
157062 GAGC
1 GAGC
157066 CTGAGCAGCC
Statistics
Matches: 40, Mismatches: 2, Indels: 20
0.65 0.03 0.32
Matches are distributed among these distances:
19 1 0.03
20 3 0.08
21 11 0.28
22 4 0.10
24 6 0.15
26 4 0.10
27 7 0.17
28 3 0.08
29 1 0.03
ACGTcount: A:0.23, C:0.42, G:0.29, T:0.05
Consensus pattern (21 bp):
GAGCAGCCCGAGCCCACACCT
Left flanking sequence: Indices 156493 -- 156992
CTTCTACCGAGCCTGAACCCGAGCCCACTACTGAATCTGAGGTCCCCTTGCCTTCCACGAGCGTG
CCTGCTCCTGAACCCGAACCTACCACTGAATCCGAAGTGCCGTTGCCTTCTTCCAGTGAAACCGT
GCCTGAGCCCGAACCTACCACTGTAACCGAGGTACCTTTGCCTTCTACCAGCGTGCCCGTGCCTG
AGCCCGAGCCCACTACGGTGACCGAGGTGCCCTTGCCGTCGGAGAGTGTTCCTGTCCCCGAACCT
GAACCCACTACCGAGACCGAGGTTCCTTTGCCTTCCACCAGCGTGCCCGTGCCCGAGCCTGAGCC
CACTACTGTGACAGAGGTGCCCTTGCCCTCTGAAAGTGAGCCTGTCCCCGAACCCGAGCCCACTA
CCGAGGCCGAGGTCCCCTTGCCTTCCACTAGTGCACATGTGCCTGAGCCTGAACCTACTACGAAG
ACTGAAGTGCCCTTACCTTCTGAGAGTGTACCCGCCCCCGAGCCC
Right flanking sequence: Indices 157066 -- 157565
CTGAGCAGCCGAAGCCTGAGCCCGAGCAGCCCGAGCCCACGCCCGAGCCTGAGCAGCCGAAGCCC
GAGCCCGAGCAGCCCCAGCCCGAGCCTGAGCAGCCGAAGCCTGAGCCCGAGCAGCCCAAGCCCGA
GCCCGAGCAACCTCAACCGGAGCCCGAAGTTACCAACACGTTAACGGTCACTATCCACCCTCCCA
TTGAGACTGAGCTCCCTCCCCCTGTGAACACCGTCCCCGAGGCCCCGGCTCCGGAGGTGCCAGAA
CAAACCGTTGTTCCTGGCGAACCGCCGGTGAGCCCCGAGGTGCCACCCATGGAGGAAGCACCTGC
TCCTGAGCCTGAACAGCCCACATTTGTGCCGTCCGCTCCTGCTCCGAGCAACCCTGTGGAGATTC
CCGAGTACACTGGTATGGCAAACATGAAGTCGACCAACGTTTTGGTGGCTTTGGTGGCTATCTTC
GCAATGGCGATTTAGTCAGTATACCCCTAATTAGTTTGTTGTATA
Found at i:157025 original size:27 final size:27
Alignment explanation
Indices: 156987--157161 Score: 136
Period size: 27 Copynumber: 7.1 Consensus size: 27
156977 ACCCGCCCCC
*
156987 GAGCCCGAGCAGCCCGAGCCCACACCT
1 GAGCCCGAGCAGCCCGAGCCCACGCCT
*
157014 GAGCCTGAGCAG-CCGA----A-GCCT
1 GAGCCCGAGCAGCCCGAGCCCACGCCT
*
157035 GAGCCCGAGCAGCCCGAGCCCACACCT
1 GAGCCCGAGCAGCCCGAGCCCACGCCT
*
157062 GAGCCTGAGCAG-CCGA----A-GCCT
1 GAGCCCGAGCAGCCCGAGCCCACGCCT
*
157083 GAGCCCGAGCAGCCCGAGCCCACGCCC
1 GAGCCCGAGCAGCCCGAGCCCACGCCT
* *
157110 GAGCCTGAGCAG-CCGA----A-GCCC
1 GAGCCCGAGCAGCCCGAGCCCACGCCT
*
157131 GAGCCCGAGCAGCCCCAGCCCGA-GCCT
1 GAGCCCGAGCAGCCCGAGCCC-ACGCCT
157158 GAGC
1 GAGC
157162 AGCCGAAGCC
Statistics
Matches: 118, Mismatches: 12, Indels: 36
0.71 0.07 0.22
Matches are distributed among these distances:
21 43 0.36
22 14 0.12
26 14 0.12
27 47 0.40
ACGTcount: A:0.22, C:0.43, G:0.30, T:0.05
Consensus pattern (27 bp):
GAGCCCGAGCAGCCCGAGCCCACGCCT
Left flanking sequence: Indices 156487 -- 156986
CTTTGCCTTCTACCGAGCCTGAACCCGAGCCCACTACTGAATCTGAGGTCCCCTTGCCTTCCACG
AGCGTGCCTGCTCCTGAACCCGAACCTACCACTGAATCCGAAGTGCCGTTGCCTTCTTCCAGTGA
AACCGTGCCTGAGCCCGAACCTACCACTGTAACCGAGGTACCTTTGCCTTCTACCAGCGTGCCCG
TGCCTGAGCCCGAGCCCACTACGGTGACCGAGGTGCCCTTGCCGTCGGAGAGTGTTCCTGTCCCC
GAACCTGAACCCACTACCGAGACCGAGGTTCCTTTGCCTTCCACCAGCGTGCCCGTGCCCGAGCC
TGAGCCCACTACTGTGACAGAGGTGCCCTTGCCCTCTGAAAGTGAGCCTGTCCCCGAACCCGAGC
CCACTACCGAGGCCGAGGTCCCCTTGCCTTCCACTAGTGCACATGTGCCTGAGCCTGAACCTACT
ACGAAGACTGAAGTGCCCTTACCTTCTGAGAGTGTACCCGCCCCC
Right flanking sequence: Indices 157162 -- 157661
AGCCGAAGCCTGAGCCCGAGCAGCCCAAGCCCGAGCCCGAGCAACCTCAACCGGAGCCCGAAGTT
ACCAACACGTTAACGGTCACTATCCACCCTCCCATTGAGACTGAGCTCCCTCCCCCTGTGAACAC
CGTCCCCGAGGCCCCGGCTCCGGAGGTGCCAGAACAAACCGTTGTTCCTGGCGAACCGCCGGTGA
GCCCCGAGGTGCCACCCATGGAGGAAGCACCTGCTCCTGAGCCTGAACAGCCCACATTTGTGCCG
TCCGCTCCTGCTCCGAGCAACCCTGTGGAGATTCCCGAGTACACTGGTATGGCAAACATGAAGTC
GACCAACGTTTTGGTGGCTTTGGTGGCTATCTTCGCAATGGCGATTTAGTCAGTATACCCCTAAT
TAGTTTGTTGTATAGATAGAAAAGTTCTGAATGATTTGTGTTATGAAAGACGTAAAGTGTGTCGC
AGGAGACTTCGAAACGCCTTGTTACTAGAGAATTTCGATTATGAA
Found at i:157043 original size:48 final size:48
Alignment explanation
Indices: 156987--157193 Score: 327
Period size: 48 Copynumber: 4.4 Consensus size: 48
156977 ACCCGCCCCC
156987 GAGCCCGAGCAGCCCGAGCCCACACCTGAGCCTGAGCAGCCGAAGCCT
1 GAGCCCGAGCAGCCCGAGCCCACACCTGAGCCTGAGCAGCCGAAGCCT
157035 GAGCCCGAGCAGCCCGAGCCCACACCTGAGCCTGAGCAGCCGAAGCCT
1 GAGCCCGAGCAGCCCGAGCCCACACCTGAGCCTGAGCAGCCGAAGCCT
* * *
157083 GAGCCCGAGCAGCCCGAGCCCACGCCCGAGCCTGAGCAGCCGAAGCCC
1 GAGCCCGAGCAGCCCGAGCCCACACCTGAGCCTGAGCAGCCGAAGCCT
*
157131 GAGCCCGAGCAGCCCCAG----C-CC-GAGCCTGAGCAGCCGAAGCCT
1 GAGCCCGAGCAGCCCGAGCCCACACCTGAGCCTGAGCAGCCGAAGCCT
*
157173 GAGCCCGAGCAGCCCAAGCCC
1 GAGCCCGAGCAGCCCGAGCCC
157194 GAGCCCGAGC
Statistics
Matches: 150, Mismatches: 6, Indels: 9
0.91 0.04 0.05
Matches are distributed among these distances:
42 37 0.25
43 2 0.01
44 1 0.01
48 110 0.73
ACGTcount: A:0.22, C:0.43, G:0.30, T:0.04
Consensus pattern (48 bp):
GAGCCCGAGCAGCCCGAGCCCACACCTGAGCCTGAGCAGCCGAAGCCT
Left flanking sequence: Indices 156487 -- 156986
CTTTGCCTTCTACCGAGCCTGAACCCGAGCCCACTACTGAATCTGAGGTCCCCTTGCCTTCCACG
AGCGTGCCTGCTCCTGAACCCGAACCTACCACTGAATCCGAAGTGCCGTTGCCTTCTTCCAGTGA
AACCGTGCCTGAGCCCGAACCTACCACTGTAACCGAGGTACCTTTGCCTTCTACCAGCGTGCCCG
TGCCTGAGCCCGAGCCCACTACGGTGACCGAGGTGCCCTTGCCGTCGGAGAGTGTTCCTGTCCCC
GAACCTGAACCCACTACCGAGACCGAGGTTCCTTTGCCTTCCACCAGCGTGCCCGTGCCCGAGCC
TGAGCCCACTACTGTGACAGAGGTGCCCTTGCCCTCTGAAAGTGAGCCTGTCCCCGAACCCGAGC
CCACTACCGAGGCCGAGGTCCCCTTGCCTTCCACTAGTGCACATGTGCCTGAGCCTGAACCTACT
ACGAAGACTGAAGTGCCCTTACCTTCTGAGAGTGTACCCGCCCCC
Right flanking sequence: Indices 157194 -- 157693
GAGCCCGAGCAACCTCAACCGGAGCCCGAAGTTACCAACACGTTAACGGTCACTATCCACCCTCC
CATTGAGACTGAGCTCCCTCCCCCTGTGAACACCGTCCCCGAGGCCCCGGCTCCGGAGGTGCCAG
AACAAACCGTTGTTCCTGGCGAACCGCCGGTGAGCCCCGAGGTGCCACCCATGGAGGAAGCACCT
GCTCCTGAGCCTGAACAGCCCACATTTGTGCCGTCCGCTCCTGCTCCGAGCAACCCTGTGGAGAT
TCCCGAGTACACTGGTATGGCAAACATGAAGTCGACCAACGTTTTGGTGGCTTTGGTGGCTATCT
TCGCAATGGCGATTTAGTCAGTATACCCCTAATTAGTTTGTTGTATAGATAGAAAAGTTCTGAAT
GATTTGTGTTATGAAAGACGTAAAGTGTGTCGCAGGAGACTTCGAAACGCCTTGTTACTAGAGAA
TTTCGATTATGAACTTAAATGAAATCATACTCTTTTGGAACATAC
Found at i:157075 original size:21 final size:21
Alignment explanation
Indices: 157003--157204 Score: 145
Period size: 21 Copynumber: 9.0 Consensus size: 21
156993 GAGCAGCCCG
157003 AGCCCACA-CCTGAGCCTGAGC
1 AGCCCA-AGCCTGAGCCTGAGC
* *
157024 AGCCGAAGCCTGAGCCCGAGC
1 AGCCCAAGCCTGAGCCTGAGC
*
157045 AGCCCGAGCCCACACCTGAGCCTGAGC
1 AGCCC-A----A-GCCTGAGCCTGAGC
* *
157072 AGCCGAAGCCTGAGCCCGAGC
1 AGCCCAAGCCTGAGCCTGAGC
*
157093 AGCCCGAGCCCACGCCCGAGCCTGAGC
1 AGCCC-A----A-GCCTGAGCCTGAGC
* * *
157120 AGCCGAAGCCCGAGCCCGAGC
1 AGCCCAAGCCTGAGCCTGAGC
* *
157141 AGCCCCAGCCCGAGCCTGAGC
1 AGCCCAAGCCTGAGCCTGAGC
* *
157162 AGCCGAAGCCTGAGCCCGAGC
1 AGCCCAAGCCTGAGCCTGAGC
* *
157183 AGCCCAAGCCCGAGCCCGAGC
1 AGCCCAAGCCTGAGCCTGAGC
157204 A
1 A
157205 ACCTCAACCG
Statistics
Matches: 146, Mismatches: 22, Indels: 26
0.75 0.11 0.13
Matches are distributed among these distances:
20 1 0.01
21 105 0.72
22 4 0.03
26 4 0.03
27 32 0.22
ACGTcount: A:0.23, C:0.43, G:0.30, T:0.04
Consensus pattern (21 bp):
AGCCCAAGCCTGAGCCTGAGC
Left flanking sequence: Indices 156503 -- 157002
GCCTGAACCCGAGCCCACTACTGAATCTGAGGTCCCCTTGCCTTCCACGAGCGTGCCTGCTCCTG
AACCCGAACCTACCACTGAATCCGAAGTGCCGTTGCCTTCTTCCAGTGAAACCGTGCCTGAGCCC
GAACCTACCACTGTAACCGAGGTACCTTTGCCTTCTACCAGCGTGCCCGTGCCTGAGCCCGAGCC
CACTACGGTGACCGAGGTGCCCTTGCCGTCGGAGAGTGTTCCTGTCCCCGAACCTGAACCCACTA
CCGAGACCGAGGTTCCTTTGCCTTCCACCAGCGTGCCCGTGCCCGAGCCTGAGCCCACTACTGTG
ACAGAGGTGCCCTTGCCCTCTGAAAGTGAGCCTGTCCCCGAACCCGAGCCCACTACCGAGGCCGA
GGTCCCCTTGCCTTCCACTAGTGCACATGTGCCTGAGCCTGAACCTACTACGAAGACTGAAGTGC
CCTTACCTTCTGAGAGTGTACCCGCCCCCGAGCCCGAGCAGCCCG
Right flanking sequence: Indices 157205 -- 157704
ACCTCAACCGGAGCCCGAAGTTACCAACACGTTAACGGTCACTATCCACCCTCCCATTGAGACTG
AGCTCCCTCCCCCTGTGAACACCGTCCCCGAGGCCCCGGCTCCGGAGGTGCCAGAACAAACCGTT
GTTCCTGGCGAACCGCCGGTGAGCCCCGAGGTGCCACCCATGGAGGAAGCACCTGCTCCTGAGCC
TGAACAGCCCACATTTGTGCCGTCCGCTCCTGCTCCGAGCAACCCTGTGGAGATTCCCGAGTACA
CTGGTATGGCAAACATGAAGTCGACCAACGTTTTGGTGGCTTTGGTGGCTATCTTCGCAATGGCG
ATTTAGTCAGTATACCCCTAATTAGTTTGTTGTATAGATAGAAAAGTTCTGAATGATTTGTGTTA
TGAAAGACGTAAAGTGTGTCGCAGGAGACTTCGAAACGCCTTGTTACTAGAGAATTTCGATTATG
AACTTAAATGAAATCATACTCTTTTGGAACATACAATGACAACGC
Found at i:157150 original size:15 final size:15
Alignment explanation
Indices: 157126--157155 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
157116 GAGCAGCCGA
*
157126 AGCCCGAGCCCGAGC
1 AGCCCCAGCCCGAGC
157141 AGCCCCAGCCCGAGC
1 AGCCCCAGCCCGAGC
157156 CTGAGCAGCC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.20, C:0.50, G:0.30, T:0.00
Consensus pattern (15 bp):
AGCCCCAGCCCGAGC
Left flanking sequence: Indices 156626 -- 157125
TGAGCCCGAACCTACCACTGTAACCGAGGTACCTTTGCCTTCTACCAGCGTGCCCGTGCCTGAGC
CCGAGCCCACTACGGTGACCGAGGTGCCCTTGCCGTCGGAGAGTGTTCCTGTCCCCGAACCTGAA
CCCACTACCGAGACCGAGGTTCCTTTGCCTTCCACCAGCGTGCCCGTGCCCGAGCCTGAGCCCAC
TACTGTGACAGAGGTGCCCTTGCCCTCTGAAAGTGAGCCTGTCCCCGAACCCGAGCCCACTACCG
AGGCCGAGGTCCCCTTGCCTTCCACTAGTGCACATGTGCCTGAGCCTGAACCTACTACGAAGACT
GAAGTGCCCTTACCTTCTGAGAGTGTACCCGCCCCCGAGCCCGAGCAGCCCGAGCCCACACCTGA
GCCTGAGCAGCCGAAGCCTGAGCCCGAGCAGCCCGAGCCCACACCTGAGCCTGAGCAGCCGAAGC
CTGAGCCCGAGCAGCCCGAGCCCACGCCCGAGCCTGAGCAGCCGA
Right flanking sequence: Indices 157156 -- 157655
CTGAGCAGCCGAAGCCTGAGCCCGAGCAGCCCAAGCCCGAGCCCGAGCAACCTCAACCGGAGCCC
GAAGTTACCAACACGTTAACGGTCACTATCCACCCTCCCATTGAGACTGAGCTCCCTCCCCCTGT
GAACACCGTCCCCGAGGCCCCGGCTCCGGAGGTGCCAGAACAAACCGTTGTTCCTGGCGAACCGC
CGGTGAGCCCCGAGGTGCCACCCATGGAGGAAGCACCTGCTCCTGAGCCTGAACAGCCCACATTT
GTGCCGTCCGCTCCTGCTCCGAGCAACCCTGTGGAGATTCCCGAGTACACTGGTATGGCAAACAT
GAAGTCGACCAACGTTTTGGTGGCTTTGGTGGCTATCTTCGCAATGGCGATTTAGTCAGTATACC
CCTAATTAGTTTGTTGTATAGATAGAAAAGTTCTGAATGATTTGTGTTATGAAAGACGTAAAGTG
TGTCGCAGGAGACTTCGAAACGCCTTGTTACTAGAGAATTTCGAT
Found at i:157218 original size:21 final size:21
Alignment explanation
Indices: 157101--157222 Score: 120
Period size: 21 Copynumber: 5.8 Consensus size: 21
157091 GCAGCCCGAG
* * *
157101 CCCACGCCCGAGCCTGAGCAG
1 CCCAAGCCCGAGCCCGAGCAA
* *
157122 CCGAAGCCCGAGCCCGAGCAG
1 CCCAAGCCCGAGCCCGAGCAA
* * *
157143 CCCCAGCCCGAGCCTGAGCAG
1 CCCAAGCCCGAGCCCGAGCAA
* * *
157164 CCGAAGCCTGAGCCCGAGCAG
1 CCCAAGCCCGAGCCCGAGCAA
157185 CCCAAGCCCGAGCCCGAGCAA
1 CCCAAGCCCGAGCCCGAGCAA
*
157206 CCTCAA-CCGGAGCCCGA
1 CC-CAAGCCCGAGCCCGA
157223 AGTTACCAAC
Statistics
Matches: 86, Mismatches: 14, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
21 83 0.97
22 3 0.03
ACGTcount: A:0.23, C:0.45, G:0.29, T:0.03
Consensus pattern (21 bp):
CCCAAGCCCGAGCCCGAGCAA
Left flanking sequence: Indices 156601 -- 157100
TGCCTTCTTCCAGTGAAACCGTGCCTGAGCCCGAACCTACCACTGTAACCGAGGTACCTTTGCCT
TCTACCAGCGTGCCCGTGCCTGAGCCCGAGCCCACTACGGTGACCGAGGTGCCCTTGCCGTCGGA
GAGTGTTCCTGTCCCCGAACCTGAACCCACTACCGAGACCGAGGTTCCTTTGCCTTCCACCAGCG
TGCCCGTGCCCGAGCCTGAGCCCACTACTGTGACAGAGGTGCCCTTGCCCTCTGAAAGTGAGCCT
GTCCCCGAACCCGAGCCCACTACCGAGGCCGAGGTCCCCTTGCCTTCCACTAGTGCACATGTGCC
TGAGCCTGAACCTACTACGAAGACTGAAGTGCCCTTACCTTCTGAGAGTGTACCCGCCCCCGAGC
CCGAGCAGCCCGAGCCCACACCTGAGCCTGAGCAGCCGAAGCCTGAGCCCGAGCAGCCCGAGCCC
ACACCTGAGCCTGAGCAGCCGAAGCCTGAGCCCGAGCAGCCCGAG
Right flanking sequence: Indices 157223 -- 157722
AGTTACCAACACGTTAACGGTCACTATCCACCCTCCCATTGAGACTGAGCTCCCTCCCCCTGTGA
ACACCGTCCCCGAGGCCCCGGCTCCGGAGGTGCCAGAACAAACCGTTGTTCCTGGCGAACCGCCG
GTGAGCCCCGAGGTGCCACCCATGGAGGAAGCACCTGCTCCTGAGCCTGAACAGCCCACATTTGT
GCCGTCCGCTCCTGCTCCGAGCAACCCTGTGGAGATTCCCGAGTACACTGGTATGGCAAACATGA
AGTCGACCAACGTTTTGGTGGCTTTGGTGGCTATCTTCGCAATGGCGATTTAGTCAGTATACCCC
TAATTAGTTTGTTGTATAGATAGAAAAGTTCTGAATGATTTGTGTTATGAAAGACGTAAAGTGTG
TCGCAGGAGACTTCGAAACGCCTTGTTACTAGAGAATTTCGATTATGAACTTAAATGAAATCATA
CTCTTTTGGAACATACAATGACAACGCGATTGTACAGTTACTGTA
Found at i:157774 original size:16 final size:16
Alignment explanation
Indices: 157753--157784 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
157743 ATAAGTCTCC
157753 GCATTGAAATAGCTTT
1 GCATTGAAATAGCTTT
157769 GCATTGAAATAGCTTT
1 GCATTGAAATAGCTTT
157785 AACGCAATCA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.31, C:0.12, G:0.19, T:0.38
Consensus pattern (16 bp):
GCATTGAAATAGCTTT
Left flanking sequence: Indices 157253 -- 157752
CCCTCCCATTGAGACTGAGCTCCCTCCCCCTGTGAACACCGTCCCCGAGGCCCCGGCTCCGGAGG
TGCCAGAACAAACCGTTGTTCCTGGCGAACCGCCGGTGAGCCCCGAGGTGCCACCCATGGAGGAA
GCACCTGCTCCTGAGCCTGAACAGCCCACATTTGTGCCGTCCGCTCCTGCTCCGAGCAACCCTGT
GGAGATTCCCGAGTACACTGGTATGGCAAACATGAAGTCGACCAACGTTTTGGTGGCTTTGGTGG
CTATCTTCGCAATGGCGATTTAGTCAGTATACCCCTAATTAGTTTGTTGTATAGATAGAAAAGTT
CTGAATGATTTGTGTTATGAAAGACGTAAAGTGTGTCGCAGGAGACTTCGAAACGCCTTGTTACT
AGAGAATTTCGATTATGAACTTAAATGAAATCATACTCTTTTGGAACATACAATGACAACGCGAT
TGTACAGTTACTGTACCATCTTATTCTGTTCATAAATAAGTCTCC
Right flanking sequence: Indices 157785 -- 158284
AACGCAATCATCAAAGCAGTATGCGCATTTCCAGCGAGACTACTCTACGATTACGGAGATGCAGT
AGTGCTCTTCACGGTGAATTCGAATGTGATTGTCAGGTTCAAATGCAACTACTCTCTACAACCGG
CAACATTTCAAGCGCTGTGTGCCCAGTGTTGGGATGGCGGCAATTGAACGCTTAACAATGCTTAA
TGAGTCAATCTTATCGTATCTAATTGCAGCGCAGGACGCAATTCGGCTGGGACCAGGCAGCATAC
ATGCAAACTCACAAAGAGCAAAATCACCTGGGCTGAGAAACACAATCCATATCATGCAATCTTGT
ACTTTACCAATTTTCAACCCTGGCGCCTTTCTGCCGATTGTAAATGTCCTACTAGCCAAATTTGC
TATGGCAGATGACGTAATCACACTCGATTTTTCATCTACTCATTAGACGGAAGTTGCCTAAGCGT
ACAAGATGTCGGGCGAACTAGGATGCAATGGGTTTCCCGTGCTGC
Found at i:166013 original size:30 final size:30
Alignment explanation
Indices: 165977--166051 Score: 141
Period size: 30 Copynumber: 2.5 Consensus size: 30
165967 ACCTTCTGTG
165977 GAGGCTTCCGAGGAGGTTGTGCCATCGGCT
1 GAGGCTTCCGAGGAGGTTGTGCCATCGGCT
166007 GAGGCTTCCGAGGAGGTTGTGCCATCGGCT
1 GAGGCTTCCGAGGAGGTTGTGCCATCGGCT
*
166037 GAGGCGTCCGAGGAG
1 GAGGCTTCCGAGGAG
166052 CCTGTCCCCT
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
30 44 1.00
ACGTcount: A:0.15, C:0.23, G:0.43, T:0.20
Consensus pattern (30 bp):
GAGGCTTCCGAGGAGGTTGTGCCATCGGCT
Left flanking sequence: Indices 165477 -- 165976
GGTTTGCCGACCCTATCTACCCCAACCTTGCTCCTTGTGCCCAGAAGTGCTTGGAGGACAACAAG
GACACCGGTAAGACTCCCTGCCCCTACTGGGACACTGGCTGTTTGTGCGTGATGCCCCAGTTTGC
CAACCCTATTGCCGACTGTATTGCTGCTCAGTGTGTCAATTCTGACGTCAAGCAGATGTCTGACG
CTGCCGTCAACGCCTGTTCTGCCGCTGGCGTGTGGGACCCTTTCTGGATGATCTCCGCGCCCCAG
AAGGAGGCTTTGGCCGCTGCTGCCGCTAAGCCTGCCACCACTACTTCCACTTCGGAGGCTCCCAC
TTCCACCTCTGCCGCTCCTGCTCCTACTTCGACCTCTGAGTCTCCCGTGGAGACTACTCCGGCCG
CCCCGGAAACTACCGAAGCTCCTGAGACCACCACGGCTCCCGAGCCCACCGCTAACGAGGTTGAC
ACTGGTGTTGTTGCTCCCGAGTCTGCTGAGCCTGAACCTTCTGTG
Right flanking sequence: Indices 166052 -- 166551
CCTGTCCCCTCTGCCGAGGCCTCCGCTGAGCCTTCTCAGGAGGCTTCTGCCGAAGAGTCTGCCAA
CGGCACCGTTGCCCCCGAGTCCACTTCCTCCGATAACGCTATCTCGTCTGCGATGGTTCCCCCTC
CCGCCGGTAACGTCACCGTTACTGAGGACAAGACCGTTACTGACATTGTCTTCTACTGCCCCGAG
ACCACCACCGTCACCTTGACCAAGTGTGACACCGTGTGCCAGCCCGTCGAGACCGTGTGCGAGCC
CGGTACCGTCACCGTGACTGGTACTTGTGTTGTTCCCGGTGACTACACTCCCGCCACCAAGGGCC
AGGAGACTGTCACCGTTGCCCCTCCCGCTCCTAAGCCCACCAAGGCTGCTCCTATTAAGGTTTCT
TCTGCCGAGGAGAAGCCCGCTCCTACTGTTGCCGGCGAGAACAAGCCTGCTCCTACCGTCGCTGA
TGTGACGAAGACCGCTGTTCCCACTGTTGCTCCTGAAATTGAGCA
Found at i:170596 original size:6 final size:6
Alignment explanation
Indices: 170585--170671 Score: 111
Period size: 6 Copynumber: 14.5 Consensus size: 6
170575 CCTGTCAAGT
* * *
170585 GAGGAA GAGGAA GAGCAA GAGGAA GAGCAA GAGGAA GAGCAA GAGGAA
1 GAGGAA GAGGAA GAGGAA GAGGAA GAGGAA GAGGAA GAGGAA GAGGAA
* * * *
170633 GAGCAA GAGGAA GAGCAA GAGGAA GAGCAA GAAGAA GAG
1 GAGGAA GAGGAA GAGGAA GAGGAA GAGGAA GAGGAA GAG
170672 CAAGTTGAAG
Statistics
Matches: 67, Mismatches: 14, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
6 67 1.00
ACGTcount: A:0.51, C:0.07, G:0.43, T:0.00
Consensus pattern (6 bp):
GAGGAA
Left flanking sequence: Indices 170085 -- 170584
GTAACGGGCGCAACCGAGGCAACTGCGTGCTAACCACTGTGGTTGGTGCGATATTGCTATTGTCC
CTATTAGCCGCATGCTCCCGTCGGCTAACTTTACTCTTTGTCCCGATGTATATTGCCGCCATAGC
AAGACGACGCCCCCTACTGAGAACAAGTGGTACCATTTACCCCTAATGACGTTCACCACACGCAA
GATTCAAGGAGTACCACAATACGAAAAACAATAGACGGTTGTGTAAATGTAAATACCCGCATTGG
TATAGCCGCCCCGTCACGTGCGAAGATCATCGTTAGTAGTGTGAGCCAACGGTTACAATCATGGT
CGAGACAAAACGGGGAAAACGCATCGTGGTAAAGAACTCGATCCAGCATGCGAGGAACCAAACAC
AACATCAAACACTCAAGCGGAGAGTCGAGCCGGTGATCGAGCCCGTATCTGATCACAAGCGCTTG
AAGGCAAGCGAGAAGCCTGCGTTAATCCCGACCTACCTGTCAAGT
Right flanking sequence: Indices 170672 -- 171171
CAAGTTGAAGAAAAGGTGGACAAAGTCGACGAAACAGAGACTACACAGCCAAATAGCCCCACCAG
CGACGAGCGAAGCAAATATGAGCATTCAGATGCATCTGAAGATGACGACGAAGCTGATTCATCAA
GCGACAAAGAGGATCTTGCAGCAATCCAGGCTGAACTCGAGAAAACTGAAGAACAGCGGAAGCTG
CTCAACAACGCGACCCAAGTGTCCACCACCCGCAAACGCTCATCATGGCGGGACACTCCGTACAC
ACGTCCCGAGACCAATGAGTCCCCTAAAGAAACCAACTACGACACAAGTGTGATCAACTCCGAAC
GACACAAGGAATTTCTTCGGAAGTATATCAGGTAACAGGCATTCGACCTAGAGGGAGCGGGTCCT
CCCATAGATTTATAGAGGCATAACATAAATTAGTCATAATCATTACAAACTGTTCAAAAGCTTAT
TGAACTGGGACTGGATGTCTTGCTCCGCCAGTTCAGCAAACACGA
Found at i:170682 original size:12 final size:12
Alignment explanation
Indices: 170589--170675 Score: 165
Period size: 12 Copynumber: 7.2 Consensus size: 12
170579 TCAAGTGAGG
170589 AAGAGGAAGAGC
1 AAGAGGAAGAGC
170601 AAGAGGAAGAGC
1 AAGAGGAAGAGC
170613 AAGAGGAAGAGC
1 AAGAGGAAGAGC
170625 AAGAGGAAGAGC
1 AAGAGGAAGAGC
170637 AAGAGGAAGAGC
1 AAGAGGAAGAGC
170649 AAGAGGAAGAGC
1 AAGAGGAAGAGC
*
170661 AAGAAGAAGAGC
1 AAGAGGAAGAGC
170673 AAG
1 AAG
170676 TTGAAGAAAA
Statistics
Matches: 74, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
12 74 1.00
ACGTcount: A:0.52, C:0.08, G:0.40, T:0.00
Consensus pattern (12 bp):
AAGAGGAAGAGC
Left flanking sequence: Indices 170089 -- 170588
CGGGCGCAACCGAGGCAACTGCGTGCTAACCACTGTGGTTGGTGCGATATTGCTATTGTCCCTAT
TAGCCGCATGCTCCCGTCGGCTAACTTTACTCTTTGTCCCGATGTATATTGCCGCCATAGCAAGA
CGACGCCCCCTACTGAGAACAAGTGGTACCATTTACCCCTAATGACGTTCACCACACGCAAGATT
CAAGGAGTACCACAATACGAAAAACAATAGACGGTTGTGTAAATGTAAATACCCGCATTGGTATA
GCCGCCCCGTCACGTGCGAAGATCATCGTTAGTAGTGTGAGCCAACGGTTACAATCATGGTCGAG
ACAAAACGGGGAAAACGCATCGTGGTAAAGAACTCGATCCAGCATGCGAGGAACCAAACACAACA
TCAAACACTCAAGCGGAGAGTCGAGCCGGTGATCGAGCCCGTATCTGATCACAAGCGCTTGAAGG
CAAGCGAGAAGCCTGCGTTAATCCCGACCTACCTGTCAAGTGAGG
Right flanking sequence: Indices 170676 -- 171175
TTGAAGAAAAGGTGGACAAAGTCGACGAAACAGAGACTACACAGCCAAATAGCCCCACCAGCGAC
GAGCGAAGCAAATATGAGCATTCAGATGCATCTGAAGATGACGACGAAGCTGATTCATCAAGCGA
CAAAGAGGATCTTGCAGCAATCCAGGCTGAACTCGAGAAAACTGAAGAACAGCGGAAGCTGCTCA
ACAACGCGACCCAAGTGTCCACCACCCGCAAACGCTCATCATGGCGGGACACTCCGTACACACGT
CCCGAGACCAATGAGTCCCCTAAAGAAACCAACTACGACACAAGTGTGATCAACTCCGAACGACA
CAAGGAATTTCTTCGGAAGTATATCAGGTAACAGGCATTCGACCTAGAGGGAGCGGGTCCTCCCA
TAGATTTATAGAGGCATAACATAAATTAGTCATAATCATTACAAACTGTTCAAAAGCTTATTGAA
CTGGGACTGGATGTCTTGCTCCGCCAGTTCAGCAAACACGAGTTT
Found at i:175670 original size:12 final size:12
Alignment explanation
Indices: 175633--175676 Score: 52
Period size: 12 Copynumber: 3.7 Consensus size: 12
175623 GTCAACAAAA
* *
175633 CTGGTGCTGCCG
1 CTGGTGCCGCTG
*
175645 CTGGTGCGGCTG
1 CTGGTGCCGCTG
*
175657 CTGGTGCCGTTG
1 CTGGTGCCGCTG
175669 CTGGTGCC
1 CTGGTGCC
175677 ACCGGAGCTG
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
12 28 1.00
ACGTcount: A:0.00, C:0.30, G:0.43, T:0.27
Consensus pattern (12 bp):
CTGGTGCCGCTG
Left flanking sequence: Indices 175133 -- 175632
TCACACAAGACTGGACGTTGCTGGGACTAACGGGCCTACTGGAACCACGGGCAATACTGGTGCTA
CTGGCGCTACTGGAACTCACGGCAAGACGACTGGCGCTACTGGTGCCACCGGCAATACTGCTGCT
ACTGGCGCCACCGGTGCTCACGGTAAGGGCTCAGGTTCGCATGGAAAGACTGCTGCCGCCGGTGC
TACTGCCGGTGCTGCTGCTGGAACTGCCGCTGGCTCCAAGAATGCTAAGTCTGAGGAAAAGAAGG
AGAAGTCTGGTCGTCGTTTGTCCAATTTTTTTAGCAAGAAAGACAAGAAGAAGAACAAGGACACC
TCCAAGGGCGAAGTGGCCTCTCCTGACTCCAACCGTGACATCCAAAAGGGTGGTGGCGGCAACGT
TGACCTCTCCAATTTGCAGTCGACCAAGGGTGTTGTGCATCAAGCTGGTCGTGGCCAGTACGATG
TTGAGGGTCACCATCTTGATGACCACACTGCTCGTGTCAACAAAA
Right flanking sequence: Indices 175677 -- 176176
ACCGGAGCTGCTGTTCTCAGTAACAGAGGTGAAGGTCAGGGCCGCGTTGATGACCCTGCCGTGGG
CACCAGCGGTTCTGGAGTAGTGAAGAACGCGGTTAGTGGGTCTACTTTGGGTCAGCAACAAATCA
CGGGACACCGTGTTGATGAGCCTTCTACTGCTGGCGTTGGTACCGGTCGTGATGGATACACTGAC
ACCAACGACCTTGGTGTCAGTGGCGAGGCTGTTAACCCTAAATTGGGTGGCCGCGATGCCAATGA
TGGCCGTGGCGGTATTGGTGGTGCTGGATTGAACCAAGGCAGCCGACACAATGATGCTGGATACC
ACGATGCTGATGCTGGCGTTGGTGGTGCTGGATATAACGCCTACGACAAGAGCCGGAGAAACACC
GAGCCTGAGACGTTTTACGACACCAACGACCATCCTGCGGAGGGCCAGTACAATGTTGCTGGTAC
CCCTGGGGACCGGAACATTACTGACGTGAACGAAAACTACGAGAC
Found at i:177010 original size:15 final size:15
Alignment explanation
Indices: 176978--177016 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 15
176968 CTGCTGGTAT
* *
176978 TGGTGCTGGTGGGGC
1 TGGTGCTGGTGCGAC
*
176993 TGGTGCTGGTGCTAC
1 TGGTGCTGGTGCGAC
177008 TGGTGCTGG
1 TGGTGCTGG
177017 AGCAGCTGGA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.03, C:0.15, G:0.51, T:0.31
Consensus pattern (15 bp):
TGGTGCTGGTGCGAC
Left flanking sequence: Indices 176478 -- 176977
GACTACGAGACTTATCGTGAACTTAATCAGAACCCTGCTTCCGGCGACTTCAATGTTGCTGGCAC
TCCTGGTGACCGCAACGTCACCAATGTTGGTGAGAGTTATTCCAAAACCAACCAGAGGGGTGATT
CTGCCGGTGGGACTTTCTTGTCCCAACCAGTTCCATTTTCTGAAACAAACCAGCACCCGGCGTCC
GGTGATTATAACATCAAGGACACCCCTGGTGACCTCAACACTACCAATGTGGGTACTGGTGCTGG
CTCAGGGGCTTTCCGTGACGATCAACCCAATTACGAAACCTTCAGCGAAACGAACCAGCGCCCAG
CTGCTGGTGAGTTTAACATTGCTGAGACCCCCAGCGACCGCAATGTGACTAACATTGGCGGAAAG
CTGAGTCTCGATCCCGGCTTGGGAGGCGCGAAGGGTGTCAACACTGGTGCTTTTGATTCCACTGG
AGTGGATTCAACCGGAGTAGAGCCTGGTACTGGGTCTGCTGGTAT
Right flanking sequence: Indices 177017 -- 177516
AGCAGCTGGAGCCGGTGCTGGCGCTTCTGGCGCTGGTGGCTTTGGCGGAATGGCTCGTTCTGCTT
TTGACAAAGGTAAGACGTACGCCAAGGAGAACCCCGATGAGCTCAAGCGTCATGGTAAGACGGCT
TTCGGAAAGATCAGTCTGACTTTGGACCCTAAAAAGAACTAGAATGTTTGTTAATTATTAATTGA
ATAAGTGATTAGAGCACCAGGCCCTAGGCGTTAATGTTTGGATTGTGCCAAACAGTGTATTCTCG
ACCTGTCTTGTAGCGTATACCAAGTAGACTGGGAGGACAAATGAGTGGGTCAAAAACCGCTTTTA
GGTTAACGTGCCCAAAGCACTGAATGTCAGTATTTTGGGGTGTTCTGCGAAGCGTGAAGTCTGTA
CTTTGGGCTCCACCAATAACCAGAGGCAAACTGTACGATTCCAAAAGCCAAAGCCTTGGATGGTG
TGAAAGCACACGTCTTGTTCTCGCCCGCTTACGATTAGTTTCACC
Found at i:210875 original size:47 final size:47
Alignment explanation
Indices: 210806--210900 Score: 190
Period size: 47 Copynumber: 2.0 Consensus size: 47
210796 CTTTAGAGTA
210806 TGTGGGGTTTGGCACACGTCCGCTTGGTAATGCTCGGGGAACCACTG
1 TGTGGGGTTTGGCACACGTCCGCTTGGTAATGCTCGGGGAACCACTG
210853 TGTGGGGTTTGGCACACGTCCGCTTGGTAATGCTCGGGGAACCACTG
1 TGTGGGGTTTGGCACACGTCCGCTTGGTAATGCTCGGGGAACCACTG
210900 T
1 T
210901 TTTGCGACGT
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
47 48 1.00
ACGTcount: A:0.15, C:0.23, G:0.36, T:0.26
Consensus pattern (47 bp):
TGTGGGGTTTGGCACACGTCCGCTTGGTAATGCTCGGGGAACCACTG
Left flanking sequence: Indices 210306 -- 210805
CGAGTCGCTGAAAGACTTGCCATTCAATTCGCTCTGCTTTTTGCTGAAGAACCAGCCTGTGGCAA
GTAGCCACTCGCGCGTTTTGGTGTTGTACGAGGGTAACAAGGTTGGCAAGAGGGCCGCAAGCTTG
AGCCGGACGCCCACATCATCGAGCCGGCTGGTTACGACGAGAGGCAGGAGATGAACACCTCGCAG
GCGCTCAACATGTTCAACCTGAAAAACTTGAAGGATCGCGTCACCAAGCTGAAGCCAGGTAAGAA
ATTGACTACCACCCTTCAAAACACGATTACCGCTGTGCGCAAATACGCCAAAAACACCCGTCCAC
CTCGGGCGTCGATGGCAAAGTTGTTATCTTCAAGGTTGAGATTAGGTAGAAATATAAGAGAGAGC
AGTTGCATTTGTACTCGTAATTTACCTTGGACTAAATACTCTGCTGATGCCTCTATGACTCTTCT
AGGGAGATTGACTTCTTCATGAGTTGGAATCCATCCTTTAGAGTA
Right flanking sequence: Indices 210901 -- 211400
TTTGCGACGTCAAATTATTTGAATGTGCCAACAAGCAGTTGGATGCCTCAGCCACTTCCCACTGC
TGCTTGCGCAATGCCTCGAACGAGGTGAAGCAGTAAATACCACCCGCAGAAGCTCATACCTGAAC
GCCTCCTGGCTAGAAGAAAGCGGTTCGTTGGGGCTGGCATTGGTAGACTCGGACCCACCACAGGG
AACAGGGGGGTACATGTGGGGGTGCCCGCGGACTGGTGGGAGTGGGTTTGATATCCTAGACACTA
CGTTCGTCAGAGCCGCGGTTGTTCCTTTTGGGCAACAATTGTGAATAGCACTAGGTTTCTCTCAT
ACCCAATGAGGCAATCTAACTACATACAATGAGGGGTATATCTGACGCCGTTTTCGTGTTCATTG
CATCTCGCTGCAGAGTATCTCCATGCAAGTGATCGATTAAGCGAGGGACACAATCTTGGCGTATG
CAGACCAAGCATCGAGTGATCGTAGAAGCCTATAGGTTGCGAAAG
Found at i:236205 original size:12 final size:12
Alignment explanation
Indices: 236188--236219 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
236178 TGGTGCCATC
236188 GTTGGCGGTGTT
1 GTTGGCGGTGTT
236200 GTTGGCGGTGTT
1 GTTGGCGGTGTT
*
236212 GCTGGCGG
1 GTTGGCGG
236220 ATTCCTTTTG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.00, C:0.12, G:0.53, T:0.34
Consensus pattern (12 bp):
GTTGGCGGTGTT
Left flanking sequence: Indices 235688 -- 236187
GCCTGGCCAAGGGTACAGATCAGTATATGACCCCTTCGCTCTGTGCTGACATGTGCAAGGGCTCC
GCATACACTGCCATTCAGGACCAAAAGTGCTACTGTTTGCTGCTGAAACCCAGCGACAACGGTGG
CTCTTGTAACACCGTTTGCCCCGGCTTTGGCTCCATCAAGTGCGGTGGCCAGTCGGCTTTCAGTA
TCTTTCAAATCGGCGATGACGATGGTGCCACCGAGCCCCTGTCAAGCAAAGACGAGCCGTCTTCC
ACAAAACCTCTGACTCACGCGGAAAGCAAGACCTCTGCTCTGCCGACCAAGTCCGAAGTGGGGAC
CACTGTCACCGACTCCCCGTCCAAGCTGACCCAGACCGTCATCACCACTGCTGTCACCTCGGGTG
ACCTGGTGGTCACCATCTACCAAACTCTGAACGTGGCCCACCCGACGTCGCTGCTGCTGCTGAGC
TCCAAGGATGACGAACCCAAGAAGAAGAGCAACACTGGTGCCATC
Right flanking sequence: Indices 236220 -- 236719
ATTCCTTTTGGCTCTCGCTGCGTTCTTTTTCATCCGCTGGAGACGCAACCGAGACTACGATGAGG
ACGACGAGGAGTACGACTTTGGTCCCGAAAAGGGCACGTTTGACGCTGTGGGCATTGGTCGTGGC
AACACTGCCAAGGGCCTGAAGCGCTCCAGAGCCGGCCCTCTCGACATGCCGATGGCAAACCCGTT
TGACCACCCATCTGACCCGCGAACTACTGGCGGAGTCACCCCGAACTTGCCCCTGGACCCGCGCA
TGAACCCTGTGATGATGGGTCGTAGCCGGTTGTCAGAAGACCTGTTGGCAGATAACGCTGACTAC
TCGCGGAAGATTCTCCACGTAGCTAACCCCGATGGGCTATAGCCGAGTCGCGTGAACACGCGTAG
ACCGTGACATTTCCGGTTTTGAACCGGCTTGCTTTTTATGGGTTTTAGGGCAGGGCTAGGATACA
GCCCCTCATGAGACCATCACCGCTATTGAGGATACATATACAATT
Found at i:244626 original size:21 final size:21
Alignment explanation
Indices: 244585--244628 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
244575 AGCGCTACCC
*
244585 GCCACACCCGGAGGGCAAACT
1 GCCACACCCGGACGGCAAACT
*
244606 GCCACACCCGTGCCGGC-AACT
1 GCCACACCCG-GACGGCAAACT
244627 GC
1 GC
244629 TGGATGTAGA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 16 0.80
22 4 0.20
ACGTcount: A:0.23, C:0.43, G:0.27, T:0.07
Consensus pattern (21 bp):
GCCACACCCGGACGGCAAACT
Left flanking sequence: Indices 244085 -- 244584
CCACGCCACGTAGTCGCGCCAGTTGGTGGTGACCTGCTCGGTGAGCCGCGGCCCGTACCAGAGCG
CCACGATGATCACCGGCCAGTACCGCAGCCACACCCGTGGGGGCGCTGTCCGCCAGAGCCGCTGC
GGCGCCAGCGACTCCGACGCGATGACGTCATCGATGATCTGCAACACCCGCTGGTTGGCGTTGGC
AGCCGGGTTGGTGATGCCGAGCGCCGCCTCCATCGCCACCACCACCGCGGGGGTGTGGGTGTAGT
CGTCGACCTTGACCAAGCCGTCGATGATCGCCAGGTTGGCCTCGATCTGGCCCTTGATGTCGGCG
ATGCGGGCGCCAATGTCGCTGGCGGCAATAGTGATCGGCATGCGGAAAGCCGCCTTCGTGCGGCG
CCAGGCCAGCTGGGGGCGGAGAATGGTGTCCACGGGGTTCAACCGCACCAAGTCCTGGTGCCACA
CGTTGCCCATGGTCTCCAACAACGAGTTGTACAGCAGCGCTACCC
Right flanking sequence: Indices 244629 -- 245128
TGGATGTAGAACACCAACCGGTTCATCGACGAGCCATTGACCCCCTCCCAGTACGCCAACTGCAG
CTTGAGCACAAGCGTGTTGTAGATGACGTTGTTGGAGTGCGCTGCTGCCGCCGCAAGCACCCCGT
AGGTGTCCACGGCCCTGCTCACGTCGCGCGGCGGCTCCGGGTGCTCGATGAAGACCGAGCGGAGC
TTCTGGAGGTTGGCCTCGGCTAGGGGGAACTCGTGGCTGTCGTCTCCAAGGCCCAAATCGTCGTA
CACCACGCGCAACACCGCCAAGTCCGACGGTTTTGCCGTTTCGTGGCTGGCGAGCACCAATTGCG
CGGTGGCGTCGTTGGCGGCGTCGAGCAGCGAGTCGATGCGGCGCGAGATCACGCTGTTGCGGGAT
ATCTCCCGCCACACCTGGTTCTGGGAGAGCCCCGCCTGGTAGAGCTTCATATCGTACGGTTGGTT
GCGGTGGGCGCGCTTATATAGGGGCCGGGCTCGTGTGCGGTGGGC
Found at i:245188 original size:14 final size:14
Alignment explanation
Indices: 245169--245203 Score: 70
Period size: 14 Copynumber: 2.5 Consensus size: 14
245159 CAGGGGTGTA
245169 GGCGGGGCGTAGGC
1 GGCGGGGCGTAGGC
245183 GGCGGGGCGTAGGC
1 GGCGGGGCGTAGGC
245197 GGCGGGG
1 GGCGGGG
245204 AGCATAGACG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.06, C:0.20, G:0.69, T:0.06
Consensus pattern (14 bp):
GGCGGGGCGTAGGC
Left flanking sequence: Indices 244669 -- 245168
CCCCCTCCCAGTACGCCAACTGCAGCTTGAGCACAAGCGTGTTGTAGATGACGTTGTTGGAGTGC
GCTGCTGCCGCCGCAAGCACCCCGTAGGTGTCCACGGCCCTGCTCACGTCGCGCGGCGGCTCCGG
GTGCTCGATGAAGACCGAGCGGAGCTTCTGGAGGTTGGCCTCGGCTAGGGGGAACTCGTGGCTGT
CGTCTCCAAGGCCCAAATCGTCGTACACCACGCGCAACACCGCCAAGTCCGACGGTTTTGCCGTT
TCGTGGCTGGCGAGCACCAATTGCGCGGTGGCGTCGTTGGCGGCGTCGAGCAGCGAGTCGATGCG
GCGCGAGATCACGCTGTTGCGGGATATCTCCCGCCACACCTGGTTCTGGGAGAGCCCCGCCTGGT
AGAGCTTCATATCGTACGGTTGGTTGCGGTGGGCGCGCTTATATAGGGGCCGGGCTCGTGTGCGG
TGGGCAGATCACGATGGGGCGATGGGAGGTGGCGGCAGGGGTGTA
Right flanking sequence: Indices 245204 -- 245703
AGCATAGACGGTGGGGAGCGTAGAGGGTAGGTAGCGTAGACGAGTGGGATGGGCGGTGTGTGATG
GTGAGGCTTGTTGAAGGCTGGTGTACGGAAATCGAGGACTGAGACAAAAATAGAGAGCATGAGAA
AACGGGAGATGGACGGGATGAACGGGATGAACCGGGTGAATTGACTCAATGGCAGTACGAGTGCT
GGAAGAGTGGTGTCAGCGGTAGAATCGAGTGGACTACGATCACCTGTGTCTGTGACTTACTCTAT
TTCTAGATTATTTCTAGTCGGTTACTAGTCTCAAACATGTAGTCAGAATCCCACGCTATAGCCAT
AAAAAAAATCAAAAAAAACCCAAAAAAACCCCATCAATACCCTCAGCACAACCCTCTTAACACCC
CCAACCCCACCGTAGCCACTCACCACCCGCGCAAGTGCTCTACGTTGGGACCATGAATTCCCCAT
GTACGTGGCCTGCATATAACATCGGAGTACCCCACGTCCGTACGA
Found at i:245221 original size:16 final size:16
Alignment explanation
Indices: 245189--245251 Score: 63
Period size: 16 Copynumber: 3.9 Consensus size: 16
245179 AGGCGGCGGG
* *
245189 GCGTAGGCGGCGGGGA
1 GCGTAGACGGTGGGGA
*
245205 GCATAGACGGTGGGGA
1 GCGTAGACGGTGGGGA
* * *
245221 GCGTAGAGGGTAGGTA
1 GCGTAGACGGTGGGGA
245237 GCGTAGACGAGTGGG
1 GCGTAGACG-GTGGG
245252 ATGGGCGGTG
Statistics
Matches: 37, Mismatches: 9, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
16 33 0.89
17 4 0.11
ACGTcount: A:0.21, C:0.13, G:0.54, T:0.13
Consensus pattern (16 bp):
GCGTAGACGGTGGGGA
Left flanking sequence: Indices 244689 -- 245188
TGCAGCTTGAGCACAAGCGTGTTGTAGATGACGTTGTTGGAGTGCGCTGCTGCCGCCGCAAGCAC
CCCGTAGGTGTCCACGGCCCTGCTCACGTCGCGCGGCGGCTCCGGGTGCTCGATGAAGACCGAGC
GGAGCTTCTGGAGGTTGGCCTCGGCTAGGGGGAACTCGTGGCTGTCGTCTCCAAGGCCCAAATCG
TCGTACACCACGCGCAACACCGCCAAGTCCGACGGTTTTGCCGTTTCGTGGCTGGCGAGCACCAA
TTGCGCGGTGGCGTCGTTGGCGGCGTCGAGCAGCGAGTCGATGCGGCGCGAGATCACGCTGTTGC
GGGATATCTCCCGCCACACCTGGTTCTGGGAGAGCCCCGCCTGGTAGAGCTTCATATCGTACGGT
TGGTTGCGGTGGGCGCGCTTATATAGGGGCCGGGCTCGTGTGCGGTGGGCAGATCACGATGGGGC
GATGGGAGGTGGCGGCAGGGGTGTAGGCGGGGCGTAGGCGGCGGG
Right flanking sequence: Indices 245252 -- 245751
ATGGGCGGTGTGTGATGGTGAGGCTTGTTGAAGGCTGGTGTACGGAAATCGAGGACTGAGACAAA
AATAGAGAGCATGAGAAAACGGGAGATGGACGGGATGAACGGGATGAACCGGGTGAATTGACTCA
ATGGCAGTACGAGTGCTGGAAGAGTGGTGTCAGCGGTAGAATCGAGTGGACTACGATCACCTGTG
TCTGTGACTTACTCTATTTCTAGATTATTTCTAGTCGGTTACTAGTCTCAAACATGTAGTCAGAA
TCCCACGCTATAGCCATAAAAAAAATCAAAAAAAACCCAAAAAAACCCCATCAATACCCTCAGCA
CAACCCTCTTAACACCCCCAACCCCACCGTAGCCACTCACCACCCGCGCAAGTGCTCTACGTTGG
GACCATGAATTCCCCATGTACGTGGCCTGCATATAACATCGGAGTACCCCACGTCCGTACGAATA
CCCCACGTTCATACCCCACGTCCGTACCCACGTCCATACCCACGT
Found at i:245720 original size:13 final size:13
Alignment explanation
Indices: 245704--245757 Score: 76
Period size: 12 Copynumber: 4.3 Consensus size: 13
245694 GTCCGTACGA
*
245704 ATACCCCACGTTC
1 ATACCCCACGTCC
245717 ATACCCCACGTCC
1 ATACCCCACGTCC
*
245730 GTA-CCCACGTCC
1 ATACCCCACGTCC
245742 ATA-CCCACGTCC
1 ATACCCCACGTCC
245754 ATAC
1 ATAC
245758 GAGTACTACG
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
12 23 0.62
13 14 0.38
ACGTcount: A:0.24, C:0.48, G:0.09, T:0.19
Consensus pattern (13 bp):
ATACCCCACGTCC
Left flanking sequence: Indices 245204 -- 245703
AGCATAGACGGTGGGGAGCGTAGAGGGTAGGTAGCGTAGACGAGTGGGATGGGCGGTGTGTGATG
GTGAGGCTTGTTGAAGGCTGGTGTACGGAAATCGAGGACTGAGACAAAAATAGAGAGCATGAGAA
AACGGGAGATGGACGGGATGAACGGGATGAACCGGGTGAATTGACTCAATGGCAGTACGAGTGCT
GGAAGAGTGGTGTCAGCGGTAGAATCGAGTGGACTACGATCACCTGTGTCTGTGACTTACTCTAT
TTCTAGATTATTTCTAGTCGGTTACTAGTCTCAAACATGTAGTCAGAATCCCACGCTATAGCCAT
AAAAAAAATCAAAAAAAACCCAAAAAAACCCCATCAATACCCTCAGCACAACCCTCTTAACACCC
CCAACCCCACCGTAGCCACTCACCACCCGCGCAAGTGCTCTACGTTGGGACCATGAATTCCCCAT
GTACGTGGCCTGCATATAACATCGGAGTACCCCACGTCCGTACGA
Right flanking sequence: Indices 245758 -- 246257
GAGTACTACGTCCTGTAAGAGTACCTCGCCCATACTTCTTCCCCTACTTCTTCCCCTACTTCTTC
CCTACTTCTTCCCCTACTTCTATGCAATGTATTACCGGAGGTCGTTATTTATCTGGCTCTCGTGG
TGGATGCGCTTGTTCAAGTTCTCGATGTCCTCCTTGAGCGACGCCTCCTCCACCGTCTTCACAAG
CTCCTTGGTGCACTTGGCAATGTCAAACGAGATCCCCGCCAACCGCTGCTTGAAGTTCTTGTCGG
CGTAGTCGGCGTCGGTCTTGTCGGCCAGCGGCTTGCACAACACCTTCATCCGGGTCTCGCAGTCC
TCGAGCGACCGCACCACCCACAGCCCGTGCTCCTTGAGCAGCGCGTTGCGCGTCTGGTTCATCAG
GGTGTTGGTGGCCTCGGTCATCTGCGAGATCACCTCGGCGATGGCCTGCGAGTTCTGCCGCAACT
CGCCGCGGGTGGCGTCGGGCTTCTTGATCGCCAGCAACAACAGCT
Found at i:245807 original size:12 final size:12
Alignment explanation
Indices: 245790--245843 Score: 101
Period size: 12 Copynumber: 4.6 Consensus size: 12
245780 ACCTCGCCCA
245790 TACTTCTTCCCC
1 TACTTCTTCCCC
245802 TACTTCTTCCCC
1 TACTTCTTCCCC
245814 TACTTCTT-CCC
1 TACTTCTTCCCC
245825 TACTTCTTCCCC
1 TACTTCTTCCCC
245837 TACTTCT
1 TACTTCT
245844 ATGCAATGTA
Statistics
Matches: 41, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
11 11 0.27
12 30 0.73
ACGTcount: A:0.09, C:0.46, G:0.00, T:0.44
Consensus pattern (12 bp):
TACTTCTTCCCC
Left flanking sequence: Indices 245290 -- 245789
TGTACGGAAATCGAGGACTGAGACAAAAATAGAGAGCATGAGAAAACGGGAGATGGACGGGATGA
ACGGGATGAACCGGGTGAATTGACTCAATGGCAGTACGAGTGCTGGAAGAGTGGTGTCAGCGGTA
GAATCGAGTGGACTACGATCACCTGTGTCTGTGACTTACTCTATTTCTAGATTATTTCTAGTCGG
TTACTAGTCTCAAACATGTAGTCAGAATCCCACGCTATAGCCATAAAAAAAATCAAAAAAAACCC
AAAAAAACCCCATCAATACCCTCAGCACAACCCTCTTAACACCCCCAACCCCACCGTAGCCACTC
ACCACCCGCGCAAGTGCTCTACGTTGGGACCATGAATTCCCCATGTACGTGGCCTGCATATAACA
TCGGAGTACCCCACGTCCGTACGAATACCCCACGTTCATACCCCACGTCCGTACCCACGTCCATA
CCCACGTCCATACGAGTACTACGTCCTGTAAGAGTACCTCGCCCA
Right flanking sequence: Indices 245844 -- 246343
ATGCAATGTATTACCGGAGGTCGTTATTTATCTGGCTCTCGTGGTGGATGCGCTTGTTCAAGTTC
TCGATGTCCTCCTTGAGCGACGCCTCCTCCACCGTCTTCACAAGCTCCTTGGTGCACTTGGCAAT
GTCAAACGAGATCCCCGCCAACCGCTGCTTGAAGTTCTTGTCGGCGTAGTCGGCGTCGGTCTTGT
CGGCCAGCGGCTTGCACAACACCTTCATCCGGGTCTCGCAGTCCTCGAGCGACCGCACCACCCAC
AGCCCGTGCTCCTTGAGCAGCGCGTTGCGCGTCTGGTTCATCAGGGTGTTGGTGGCCTCGGTCAT
CTGCGAGATCACCTCGGCGATGGCCTGCGAGTTCTGCCGCAACTCGCCGCGGGTGGCGTCGGGCT
TCTTGATCGCCAGCAACAACAGCTGGATCGTCAGGATCACCTGGTCGGTGTGGTGCTCCAAGTAC
AACAACACCTGCGTCAACGTGTTGTCGGGGTTTTCGATGTCGAAG
Found at i:245829 original size:23 final size:24
Alignment explanation
Indices: 245790--245843 Score: 101
Period size: 23 Copynumber: 2.3 Consensus size: 24
245780 ACCTCGCCCA
245790 TACTTCTTCCCCTACTTCTTCCCC
1 TACTTCTTCCCCTACTTCTTCCCC
245814 TACTTCTT-CCCTACTTCTTCCCC
1 TACTTCTTCCCCTACTTCTTCCCC
245837 TACTTCT
1 TACTTCT
245844 ATGCAATGTA
Statistics
Matches: 30, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
23 22 0.73
24 8 0.27
ACGTcount: A:0.09, C:0.46, G:0.00, T:0.44
Consensus pattern (24 bp):
TACTTCTTCCCCTACTTCTTCCCC
Left flanking sequence: Indices 245290 -- 245789
TGTACGGAAATCGAGGACTGAGACAAAAATAGAGAGCATGAGAAAACGGGAGATGGACGGGATGA
ACGGGATGAACCGGGTGAATTGACTCAATGGCAGTACGAGTGCTGGAAGAGTGGTGTCAGCGGTA
GAATCGAGTGGACTACGATCACCTGTGTCTGTGACTTACTCTATTTCTAGATTATTTCTAGTCGG
TTACTAGTCTCAAACATGTAGTCAGAATCCCACGCTATAGCCATAAAAAAAATCAAAAAAAACCC
AAAAAAACCCCATCAATACCCTCAGCACAACCCTCTTAACACCCCCAACCCCACCGTAGCCACTC
ACCACCCGCGCAAGTGCTCTACGTTGGGACCATGAATTCCCCATGTACGTGGCCTGCATATAACA
TCGGAGTACCCCACGTCCGTACGAATACCCCACGTTCATACCCCACGTCCGTACCCACGTCCATA
CCCACGTCCATACGAGTACTACGTCCTGTAAGAGTACCTCGCCCA
Right flanking sequence: Indices 245844 -- 246343
ATGCAATGTATTACCGGAGGTCGTTATTTATCTGGCTCTCGTGGTGGATGCGCTTGTTCAAGTTC
TCGATGTCCTCCTTGAGCGACGCCTCCTCCACCGTCTTCACAAGCTCCTTGGTGCACTTGGCAAT
GTCAAACGAGATCCCCGCCAACCGCTGCTTGAAGTTCTTGTCGGCGTAGTCGGCGTCGGTCTTGT
CGGCCAGCGGCTTGCACAACACCTTCATCCGGGTCTCGCAGTCCTCGAGCGACCGCACCACCCAC
AGCCCGTGCTCCTTGAGCAGCGCGTTGCGCGTCTGGTTCATCAGGGTGTTGGTGGCCTCGGTCAT
CTGCGAGATCACCTCGGCGATGGCCTGCGAGTTCTGCCGCAACTCGCCGCGGGTGGCGTCGGGCT
TCTTGATCGCCAGCAACAACAGCTGGATCGTCAGGATCACCTGGTCGGTGTGGTGCTCCAAGTAC
AACAACACCTGCGTCAACGTGTTGTCGGGGTTTTCGATGTCGAAG
Found at i:246431 original size:9 final size:9
Alignment explanation
Indices: 246419--246444 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
246409 CATCTCGTCC
246419 TCCAGCTCG
1 TCCAGCTCG
246428 TCCAGCTCG
1 TCCAGCTCG
246437 TCCAGCTC
1 TCCAGCTC
246445 CTCGTCCAGC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.12, C:0.46, G:0.19, T:0.23
Consensus pattern (9 bp):
TCCAGCTCG
Left flanking sequence: Indices 245919 -- 246418
CCTTGAGCGACGCCTCCTCCACCGTCTTCACAAGCTCCTTGGTGCACTTGGCAATGTCAAACGAG
ATCCCCGCCAACCGCTGCTTGAAGTTCTTGTCGGCGTAGTCGGCGTCGGTCTTGTCGGCCAGCGG
CTTGCACAACACCTTCATCCGGGTCTCGCAGTCCTCGAGCGACCGCACCACCCACAGCCCGTGCT
CCTTGAGCAGCGCGTTGCGCGTCTGGTTCATCAGGGTGTTGGTGGCCTCGGTCATCTGCGAGATC
ACCTCGGCGATGGCCTGCGAGTTCTGCCGCAACTCGCCGCGGGTGGCGTCGGGCTTCTTGATCGC
CAGCAACAACAGCTGGATCGTCAGGATCACCTGGTCGGTGTGGTGCTCCAAGTACAACAACACCT
GCGTCAACGTGTTGTCGGGGTTTTCGATGTCGAAGTCGTCGATGTTGAACGTGGCTGCGGCCATC
GACTTGCGGTACTCCTGCCGCTGGCGCGCGCTGTCCATCTCGTCC
Right flanking sequence: Indices 246445 -- 246944
CTCGTCCAGCTCCTCCTCGGACTCCTCCTCCTCCAGCTCGTCCTCGGACTCGTCCAGCTCGTCCT
CCAGCTCCTCTTCCAGGGTGGTGGCGGCGTCGATCTGGACCCGTTTCTGCACCTTGGGCGACAGC
GTGGCTGCTGCCAGCTTGAGGATGGGCAGCGCGCGCGGCGAGCTCTGCGAGAGCTTGCGGGTGGC
CTCCTGGGCGGCGCGGCCGAGCCTGGGCGACGTGGTGGACGCAGCAGCGTGGGCCACGGCGTCTG
CACGCGCTGCTCTCGCGGCCTCCTTGGCCTGGACGTCGCGGGCTCGCTGCTCGCGCTCCTCGCGG
GCACGTTCTTCGCGGGCTCGCTCCTCACGGGCCTGCTCTTCGCGGAGCCGGGCCTTGCGGGCCGC
GCTCTCCTTGCGCATGAGCCGGGCCTGCTCTGCGTCGCGCTCAGCCTGCTCTGCCTCACGGGCCT
CACGGGCCTCACGGGCCTCACGGGCCTCACGGGCCTTTTGCTCAC
Found at i:246436 original size:21 final size:21
Alignment explanation
Indices: 246406--246512 Score: 63
Period size: 21 Copynumber: 4.8 Consensus size: 21
246396 GGCGCGCGCT
* *
246406 GTCCATCTCGTCCTCCAGCTC
1 GTCCAGCTCGTCCTCCACCTC
** *
246427 GTCCAGCTCGTCCAGCTCCTC
1 GTCCAGCTCGTCCTCCACCTC
* *
246448 GTCCAGCTCCTCCTCGGACTCCTCCTC
1 GTCCAG---CTCGTC---CTCCACCTC
* *
246475 CTCCAGCTCGTCCTCGGA-CTC
1 GTCCAGCTCGTCCTC-CACCTC
246496 GTCCAGCTCGTCCTCCA
1 GTCCAGCTCGTCCTCCA
246513 GCTCCTCTTC
Statistics
Matches: 65, Mismatches: 14, Indels: 15
0.69 0.15 0.16
Matches are distributed among these distances:
20 1 0.02
21 42 0.65
24 10 0.15
27 12 0.18
ACGTcount: A:0.09, C:0.49, G:0.17, T:0.25
Consensus pattern (21 bp):
GTCCAGCTCGTCCTCCACCTC
Left flanking sequence: Indices 245906 -- 246405
TTCTCGATGTCCTCCTTGAGCGACGCCTCCTCCACCGTCTTCACAAGCTCCTTGGTGCACTTGGC
AATGTCAAACGAGATCCCCGCCAACCGCTGCTTGAAGTTCTTGTCGGCGTAGTCGGCGTCGGTCT
TGTCGGCCAGCGGCTTGCACAACACCTTCATCCGGGTCTCGCAGTCCTCGAGCGACCGCACCACC
CACAGCCCGTGCTCCTTGAGCAGCGCGTTGCGCGTCTGGTTCATCAGGGTGTTGGTGGCCTCGGT
CATCTGCGAGATCACCTCGGCGATGGCCTGCGAGTTCTGCCGCAACTCGCCGCGGGTGGCGTCGG
GCTTCTTGATCGCCAGCAACAACAGCTGGATCGTCAGGATCACCTGGTCGGTGTGGTGCTCCAAG
TACAACAACACCTGCGTCAACGTGTTGTCGGGGTTTTCGATGTCGAAGTCGTCGATGTTGAACGT
GGCTGCGGCCATCGACTTGCGGTACTCCTGCCGCTGGCGCGCGCT
Right flanking sequence: Indices 246513 -- 247012
GCTCCTCTTCCAGGGTGGTGGCGGCGTCGATCTGGACCCGTTTCTGCACCTTGGGCGACAGCGTG
GCTGCTGCCAGCTTGAGGATGGGCAGCGCGCGCGGCGAGCTCTGCGAGAGCTTGCGGGTGGCCTC
CTGGGCGGCGCGGCCGAGCCTGGGCGACGTGGTGGACGCAGCAGCGTGGGCCACGGCGTCTGCAC
GCGCTGCTCTCGCGGCCTCCTTGGCCTGGACGTCGCGGGCTCGCTGCTCGCGCTCCTCGCGGGCA
CGTTCTTCGCGGGCTCGCTCCTCACGGGCCTGCTCTTCGCGGAGCCGGGCCTTGCGGGCCGCGCT
CTCCTTGCGCATGAGCCGGGCCTGCTCTGCGTCGCGCTCAGCCTGCTCTGCCTCACGGGCCTCAC
GGGCCTCACGGGCCTCACGGGCCTCACGGGCCTTTTGCTCACGAGCCTCAGCCTGGGCCTTCTCA
CGAGCCTCAGCTTCAGCCTCGGCCTCCGCCTCAGCTTCACGGGCC
Found at i:246448 original size:12 final size:12
Alignment explanation
Indices: 246433--246459 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
246423 GCTCGTCCAG
246433 CTCGTCCAGCTC
1 CTCGTCCAGCTC
246445 CTCGTCCAGCTC
1 CTCGTCCAGCTC
246457 CTC
1 CTC
246460 CTCGGACTCC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.07, C:0.52, G:0.15, T:0.26
Consensus pattern (12 bp):
CTCGTCCAGCTC
Left flanking sequence: Indices 245933 -- 246432
TCCTCCACCGTCTTCACAAGCTCCTTGGTGCACTTGGCAATGTCAAACGAGATCCCCGCCAACCG
CTGCTTGAAGTTCTTGTCGGCGTAGTCGGCGTCGGTCTTGTCGGCCAGCGGCTTGCACAACACCT
TCATCCGGGTCTCGCAGTCCTCGAGCGACCGCACCACCCACAGCCCGTGCTCCTTGAGCAGCGCG
TTGCGCGTCTGGTTCATCAGGGTGTTGGTGGCCTCGGTCATCTGCGAGATCACCTCGGCGATGGC
CTGCGAGTTCTGCCGCAACTCGCCGCGGGTGGCGTCGGGCTTCTTGATCGCCAGCAACAACAGCT
GGATCGTCAGGATCACCTGGTCGGTGTGGTGCTCCAAGTACAACAACACCTGCGTCAACGTGTTG
TCGGGGTTTTCGATGTCGAAGTCGTCGATGTTGAACGTGGCTGCGGCCATCGACTTGCGGTACTC
CTGCCGCTGGCGCGCGCTGTCCATCTCGTCCTCCAGCTCGTCCAG
Right flanking sequence: Indices 246460 -- 246959
CTCGGACTCCTCCTCCTCCAGCTCGTCCTCGGACTCGTCCAGCTCGTCCTCCAGCTCCTCTTCCA
GGGTGGTGGCGGCGTCGATCTGGACCCGTTTCTGCACCTTGGGCGACAGCGTGGCTGCTGCCAGC
TTGAGGATGGGCAGCGCGCGCGGCGAGCTCTGCGAGAGCTTGCGGGTGGCCTCCTGGGCGGCGCG
GCCGAGCCTGGGCGACGTGGTGGACGCAGCAGCGTGGGCCACGGCGTCTGCACGCGCTGCTCTCG
CGGCCTCCTTGGCCTGGACGTCGCGGGCTCGCTGCTCGCGCTCCTCGCGGGCACGTTCTTCGCGG
GCTCGCTCCTCACGGGCCTGCTCTTCGCGGAGCCGGGCCTTGCGGGCCGCGCTCTCCTTGCGCAT
GAGCCGGGCCTGCTCTGCGTCGCGCTCAGCCTGCTCTGCCTCACGGGCCTCACGGGCCTCACGGG
CCTCACGGGCCTCACGGGCCTTTTGCTCACGAGCCTCAGCCTGGG
Found at i:246462 original size:15 final size:15
Alignment explanation
Indices: 246442--246490 Score: 50
Period size: 15 Copynumber: 3.5 Consensus size: 15
246432 GCTCGTCCAG
246442 CTCCTCGTCCAGCTC
1 CTCCTCGTCCAGCTC
*
246457 CTCCTCG--GA-CTC
1 CTCCTCGTCCAGCTC
*
246469 CTCCTCCTCCAGCTC
1 CTCCTCGTCCAGCTC
*
246484 GTCCTCG
1 CTCCTCG
246491 GACTCGTCCA
Statistics
Matches: 26, Mismatches: 5, Indels: 6
0.70 0.14 0.16
Matches are distributed among these distances:
12 9 0.35
13 1 0.04
14 1 0.04
15 15 0.58
ACGTcount: A:0.06, C:0.53, G:0.14, T:0.27
Consensus pattern (15 bp):
CTCCTCGTCCAGCTC
Left flanking sequence: Indices 245942 -- 246441
GTCTTCACAAGCTCCTTGGTGCACTTGGCAATGTCAAACGAGATCCCCGCCAACCGCTGCTTGAA
GTTCTTGTCGGCGTAGTCGGCGTCGGTCTTGTCGGCCAGCGGCTTGCACAACACCTTCATCCGGG
TCTCGCAGTCCTCGAGCGACCGCACCACCCACAGCCCGTGCTCCTTGAGCAGCGCGTTGCGCGTC
TGGTTCATCAGGGTGTTGGTGGCCTCGGTCATCTGCGAGATCACCTCGGCGATGGCCTGCGAGTT
CTGCCGCAACTCGCCGCGGGTGGCGTCGGGCTTCTTGATCGCCAGCAACAACAGCTGGATCGTCA
GGATCACCTGGTCGGTGTGGTGCTCCAAGTACAACAACACCTGCGTCAACGTGTTGTCGGGGTTT
TCGATGTCGAAGTCGTCGATGTTGAACGTGGCTGCGGCCATCGACTTGCGGTACTCCTGCCGCTG
GCGCGCGCTGTCCATCTCGTCCTCCAGCTCGTCCAGCTCGTCCAG
Right flanking sequence: Indices 246491 -- 246990
GACTCGTCCAGCTCGTCCTCCAGCTCCTCTTCCAGGGTGGTGGCGGCGTCGATCTGGACCCGTTT
CTGCACCTTGGGCGACAGCGTGGCTGCTGCCAGCTTGAGGATGGGCAGCGCGCGCGGCGAGCTCT
GCGAGAGCTTGCGGGTGGCCTCCTGGGCGGCGCGGCCGAGCCTGGGCGACGTGGTGGACGCAGCA
GCGTGGGCCACGGCGTCTGCACGCGCTGCTCTCGCGGCCTCCTTGGCCTGGACGTCGCGGGCTCG
CTGCTCGCGCTCCTCGCGGGCACGTTCTTCGCGGGCTCGCTCCTCACGGGCCTGCTCTTCGCGGA
GCCGGGCCTTGCGGGCCGCGCTCTCCTTGCGCATGAGCCGGGCCTGCTCTGCGTCGCGCTCAGCC
TGCTCTGCCTCACGGGCCTCACGGGCCTCACGGGCCTCACGGGCCTCACGGGCCTTTTGCTCACG
AGCCTCAGCCTGGGCCTTCTCACGAGCCTCAGCTTCAGCCTCGGC
Found at i:246494 original size:27 final size:27
Alignment explanation
Indices: 246442--246495 Score: 90
Period size: 27 Copynumber: 2.0 Consensus size: 27
246432 GCTCGTCCAG
*
246442 CTCCTCGTCCAGCTCCTCCTCGGACTC
1 CTCCTCCTCCAGCTCCTCCTCGGACTC
*
246469 CTCCTCCTCCAGCTCGTCCTCGGACTC
1 CTCCTCCTCCAGCTCCTCCTCGGACTC
246496 GTCCAGCTCG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.07, C:0.52, G:0.15, T:0.26
Consensus pattern (27 bp):
CTCCTCCTCCAGCTCCTCCTCGGACTC
Left flanking sequence: Indices 245942 -- 246441
GTCTTCACAAGCTCCTTGGTGCACTTGGCAATGTCAAACGAGATCCCCGCCAACCGCTGCTTGAA
GTTCTTGTCGGCGTAGTCGGCGTCGGTCTTGTCGGCCAGCGGCTTGCACAACACCTTCATCCGGG
TCTCGCAGTCCTCGAGCGACCGCACCACCCACAGCCCGTGCTCCTTGAGCAGCGCGTTGCGCGTC
TGGTTCATCAGGGTGTTGGTGGCCTCGGTCATCTGCGAGATCACCTCGGCGATGGCCTGCGAGTT
CTGCCGCAACTCGCCGCGGGTGGCGTCGGGCTTCTTGATCGCCAGCAACAACAGCTGGATCGTCA
GGATCACCTGGTCGGTGTGGTGCTCCAAGTACAACAACACCTGCGTCAACGTGTTGTCGGGGTTT
TCGATGTCGAAGTCGTCGATGTTGAACGTGGCTGCGGCCATCGACTTGCGGTACTCCTGCCGCTG
GCGCGCGCTGTCCATCTCGTCCTCCAGCTCGTCCAGCTCGTCCAG
Right flanking sequence: Indices 246496 -- 246995
GTCCAGCTCGTCCTCCAGCTCCTCTTCCAGGGTGGTGGCGGCGTCGATCTGGACCCGTTTCTGCA
CCTTGGGCGACAGCGTGGCTGCTGCCAGCTTGAGGATGGGCAGCGCGCGCGGCGAGCTCTGCGAG
AGCTTGCGGGTGGCCTCCTGGGCGGCGCGGCCGAGCCTGGGCGACGTGGTGGACGCAGCAGCGTG
GGCCACGGCGTCTGCACGCGCTGCTCTCGCGGCCTCCTTGGCCTGGACGTCGCGGGCTCGCTGCT
CGCGCTCCTCGCGGGCACGTTCTTCGCGGGCTCGCTCCTCACGGGCCTGCTCTTCGCGGAGCCGG
GCCTTGCGGGCCGCGCTCTCCTTGCGCATGAGCCGGGCCTGCTCTGCGTCGCGCTCAGCCTGCTC
TGCCTCACGGGCCTCACGGGCCTCACGGGCCTCACGGGCCTCACGGGCCTTTTGCTCACGAGCCT
CAGCCTGGGCCTTCTCACGAGCCTCAGCTTCAGCCTCGGCCTCCG
Found at i:246793 original size:30 final size:30
Alignment explanation
Indices: 246758--246814 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
246748 TCGCTGCTCG
* *
246758 CGCTCCTCGCGGGCAC-GTTCTTCGCGGGCT
1 CGCTCCTCACGGGC-CTGCTCTTCGCGGGCT
246788 CGCTCCTCACGGGCCTGCTCTTCGCGG
1 CGCTCCTCACGGGCCTGCTCTTCGCGG
246815 AGCCGGGCCT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 1 0.04
30 23 0.96
ACGTcount: A:0.04, C:0.42, G:0.32, T:0.23
Consensus pattern (30 bp):
CGCTCCTCACGGGCCTGCTCTTCGCGGGCT
Left flanking sequence: Indices 246258 -- 246757
GGATCGTCAGGATCACCTGGTCGGTGTGGTGCTCCAAGTACAACAACACCTGCGTCAACGTGTTG
TCGGGGTTTTCGATGTCGAAGTCGTCGATGTTGAACGTGGCTGCGGCCATCGACTTGCGGTACTC
CTGCCGCTGGCGCGCGCTGTCCATCTCGTCCTCCAGCTCGTCCAGCTCGTCCAGCTCCTCGTCCA
GCTCCTCCTCGGACTCCTCCTCCTCCAGCTCGTCCTCGGACTCGTCCAGCTCGTCCTCCAGCTCC
TCTTCCAGGGTGGTGGCGGCGTCGATCTGGACCCGTTTCTGCACCTTGGGCGACAGCGTGGCTGC
TGCCAGCTTGAGGATGGGCAGCGCGCGCGGCGAGCTCTGCGAGAGCTTGCGGGTGGCCTCCTGGG
CGGCGCGGCCGAGCCTGGGCGACGTGGTGGACGCAGCAGCGTGGGCCACGGCGTCTGCACGCGCT
GCTCTCGCGGCCTCCTTGGCCTGGACGTCGCGGGCTCGCTGCTCG
Right flanking sequence: Indices 246815 -- 247314
AGCCGGGCCTTGCGGGCCGCGCTCTCCTTGCGCATGAGCCGGGCCTGCTCTGCGTCGCGCTCAGC
CTGCTCTGCCTCACGGGCCTCACGGGCCTCACGGGCCTCACGGGCCTCACGGGCCTTTTGCTCAC
GAGCCTCAGCCTGGGCCTTCTCACGAGCCTCAGCTTCAGCCTCGGCCTCCGCCTCAGCTTCACGG
GCCTTACGCGCGTCCTGCTCACGCGCGTCCTCCGCGGCCTGGGCCTCCATCTCCTCGCGCACGTC
CTCCTCGTACTCGTAGTCCAGGTCCAGCAGCTCGTCCTTCTTGAGGATCGGCGGCTCGTTCTCCG
CCAGCACGTGGCTGTAGGTCAGCGCCCGCTTAGGCACGTCCGAGAACAACAGCTTGTCGGCGGTG
GTGGTTTCGTCGGCCTCGTCCACCTGGTTGCCGTGCGGCAGCGTGTGCGCCGTCAGCACGTGGTC
GGCCAGCTCGAAGGTCAGGTTCTCGAGCGGCTCCACCTCCAGCTC
Found at i:246800 original size:15 final size:15
Alignment explanation
Indices: 246758--246814 Score: 53
Period size: 15 Copynumber: 3.8 Consensus size: 15
246748 TCGCTGCTCG
246758 CGCTCCTCGCGGGCA
1 CGCTCCTCGCGGGCA
* * *
246773 CGTTCTTCGCGGGCT
1 CGCTCCTCGCGGGCA
*
246788 CGCTCCTCACGGGC-
1 CGCTCCTCGCGGGCA
*
246802 CTGCTCTTCGCGG
1 C-GCTCCTCGCGG
246815 AGCCGGGCCT
Statistics
Matches: 33, Mismatches: 8, Indels: 2
0.77 0.19 0.05
Matches are distributed among these distances:
14 1 0.03
15 32 0.97
ACGTcount: A:0.04, C:0.42, G:0.32, T:0.23
Consensus pattern (15 bp):
CGCTCCTCGCGGGCA
Left flanking sequence: Indices 246258 -- 246757
GGATCGTCAGGATCACCTGGTCGGTGTGGTGCTCCAAGTACAACAACACCTGCGTCAACGTGTTG
TCGGGGTTTTCGATGTCGAAGTCGTCGATGTTGAACGTGGCTGCGGCCATCGACTTGCGGTACTC
CTGCCGCTGGCGCGCGCTGTCCATCTCGTCCTCCAGCTCGTCCAGCTCGTCCAGCTCCTCGTCCA
GCTCCTCCTCGGACTCCTCCTCCTCCAGCTCGTCCTCGGACTCGTCCAGCTCGTCCTCCAGCTCC
TCTTCCAGGGTGGTGGCGGCGTCGATCTGGACCCGTTTCTGCACCTTGGGCGACAGCGTGGCTGC
TGCCAGCTTGAGGATGGGCAGCGCGCGCGGCGAGCTCTGCGAGAGCTTGCGGGTGGCCTCCTGGG
CGGCGCGGCCGAGCCTGGGCGACGTGGTGGACGCAGCAGCGTGGGCCACGGCGTCTGCACGCGCT
GCTCTCGCGGCCTCCTTGGCCTGGACGTCGCGGGCTCGCTGCTCG
Right flanking sequence: Indices 246815 -- 247314
AGCCGGGCCTTGCGGGCCGCGCTCTCCTTGCGCATGAGCCGGGCCTGCTCTGCGTCGCGCTCAGC
CTGCTCTGCCTCACGGGCCTCACGGGCCTCACGGGCCTCACGGGCCTCACGGGCCTTTTGCTCAC
GAGCCTCAGCCTGGGCCTTCTCACGAGCCTCAGCTTCAGCCTCGGCCTCCGCCTCAGCTTCACGG
GCCTTACGCGCGTCCTGCTCACGCGCGTCCTCCGCGGCCTGGGCCTCCATCTCCTCGCGCACGTC
CTCCTCGTACTCGTAGTCCAGGTCCAGCAGCTCGTCCTTCTTGAGGATCGGCGGCTCGTTCTCCG
CCAGCACGTGGCTGTAGGTCAGCGCCCGCTTAGGCACGTCCGAGAACAACAGCTTGTCGGCGGTG
GTGGTTTCGTCGGCCTCGTCCACCTGGTTGCCGTGCGGCAGCGTGTGCGCCGTCAGCACGTGGTC
GGCCAGCTCGAAGGTCAGGTTCTCGAGCGGCTCCACCTCCAGCTC
Found at i:246952 original size:9 final size:9
Alignment explanation
Indices: 246887--246935 Score: 98
Period size: 9 Copynumber: 5.4 Consensus size: 9
246877 AGCCTGCTCT
246887 GCCTCACGG
1 GCCTCACGG
246896 GCCTCACGG
1 GCCTCACGG
246905 GCCTCACGG
1 GCCTCACGG
246914 GCCTCACGG
1 GCCTCACGG
246923 GCCTCACGG
1 GCCTCACGG
246932 GCCT
1 GCCT
246936 TTTGCTCACG
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 40 1.00
ACGTcount: A:0.10, C:0.45, G:0.33, T:0.12
Consensus pattern (9 bp):
GCCTCACGG
Left flanking sequence: Indices 246387 -- 246886
CCTGCCGCTGGCGCGCGCTGTCCATCTCGTCCTCCAGCTCGTCCAGCTCGTCCAGCTCCTCGTCC
AGCTCCTCCTCGGACTCCTCCTCCTCCAGCTCGTCCTCGGACTCGTCCAGCTCGTCCTCCAGCTC
CTCTTCCAGGGTGGTGGCGGCGTCGATCTGGACCCGTTTCTGCACCTTGGGCGACAGCGTGGCTG
CTGCCAGCTTGAGGATGGGCAGCGCGCGCGGCGAGCTCTGCGAGAGCTTGCGGGTGGCCTCCTGG
GCGGCGCGGCCGAGCCTGGGCGACGTGGTGGACGCAGCAGCGTGGGCCACGGCGTCTGCACGCGC
TGCTCTCGCGGCCTCCTTGGCCTGGACGTCGCGGGCTCGCTGCTCGCGCTCCTCGCGGGCACGTT
CTTCGCGGGCTCGCTCCTCACGGGCCTGCTCTTCGCGGAGCCGGGCCTTGCGGGCCGCGCTCTCC
TTGCGCATGAGCCGGGCCTGCTCTGCGTCGCGCTCAGCCTGCTCT
Right flanking sequence: Indices 246936 -- 247435
TTTGCTCACGAGCCTCAGCCTGGGCCTTCTCACGAGCCTCAGCTTCAGCCTCGGCCTCCGCCTCA
GCTTCACGGGCCTTACGCGCGTCCTGCTCACGCGCGTCCTCCGCGGCCTGGGCCTCCATCTCCTC
GCGCACGTCCTCCTCGTACTCGTAGTCCAGGTCCAGCAGCTCGTCCTTCTTGAGGATCGGCGGCT
CGTTCTCCGCCAGCACGTGGCTGTAGGTCAGCGCCCGCTTAGGCACGTCCGAGAACAACAGCTTG
TCGGCGGTGGTGGTTTCGTCGGCCTCGTCCACCTGGTTGCCGTGCGGCAGCGTGTGCGCCGTCAG
CACGTGGTCGGCCAGCTCGAAGGTCAGGTTCTCGAGCGGCTCCACCTCCAGCTCCGCGTCCTCGT
CCAGCTGCTCGCGCACCGGCAGCGTCTTGAGCAGCACCCCGCGCGCCACCATGGCGTTGGCCTGC
TCCAAGTTCTTGATCAGCATCGTGCGCAGCGGCGGCTCGTCGATG
Found at i:246986 original size:24 final size:24
Alignment explanation
Indices: 246940--246986 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
246930 GGGCCTTTTG
**
246940 CTCACGAGCCTCAGCCTGGGCCTT
1 CTCACGAGCCTCAGCCTCAGCCTT
*
246964 CTCACGAGCCTCAGCTTCAGCCT
1 CTCACGAGCCTCAGCCTCAGCCT
246987 CGGCCTCCGC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.15, C:0.43, G:0.21, T:0.21
Consensus pattern (24 bp):
CTCACGAGCCTCAGCCTCAGCCTT
Left flanking sequence: Indices 246440 -- 246939
AGCTCCTCGTCCAGCTCCTCCTCGGACTCCTCCTCCTCCAGCTCGTCCTCGGACTCGTCCAGCTC
GTCCTCCAGCTCCTCTTCCAGGGTGGTGGCGGCGTCGATCTGGACCCGTTTCTGCACCTTGGGCG
ACAGCGTGGCTGCTGCCAGCTTGAGGATGGGCAGCGCGCGCGGCGAGCTCTGCGAGAGCTTGCGG
GTGGCCTCCTGGGCGGCGCGGCCGAGCCTGGGCGACGTGGTGGACGCAGCAGCGTGGGCCACGGC
GTCTGCACGCGCTGCTCTCGCGGCCTCCTTGGCCTGGACGTCGCGGGCTCGCTGCTCGCGCTCCT
CGCGGGCACGTTCTTCGCGGGCTCGCTCCTCACGGGCCTGCTCTTCGCGGAGCCGGGCCTTGCGG
GCCGCGCTCTCCTTGCGCATGAGCCGGGCCTGCTCTGCGTCGCGCTCAGCCTGCTCTGCCTCACG
GGCCTCACGGGCCTCACGGGCCTCACGGGCCTCACGGGCCTTTTG
Right flanking sequence: Indices 246987 -- 247486
CGGCCTCCGCCTCAGCTTCACGGGCCTTACGCGCGTCCTGCTCACGCGCGTCCTCCGCGGCCTGG
GCCTCCATCTCCTCGCGCACGTCCTCCTCGTACTCGTAGTCCAGGTCCAGCAGCTCGTCCTTCTT
GAGGATCGGCGGCTCGTTCTCCGCCAGCACGTGGCTGTAGGTCAGCGCCCGCTTAGGCACGTCCG
AGAACAACAGCTTGTCGGCGGTGGTGGTTTCGTCGGCCTCGTCCACCTGGTTGCCGTGCGGCAGC
GTGTGCGCCGTCAGCACGTGGTCGGCCAGCTCGAAGGTCAGGTTCTCGAGCGGCTCCACCTCCAG
CTCCGCGTCCTCGTCCAGCTGCTCGCGCACCGGCAGCGTCTTGAGCAGCACCCCGCGCGCCACCA
TGGCGTTGGCCTGCTCCAAGTTCTTGATCAGCATCGTGCGCAGCGGCGGCTCGTCGATGTTGCGC
ACCACGATCAGCTTGCGCTTGTCGTCGGAGACGGCTTCCGGCGCC
Found at i:247883 original size:30 final size:31
Alignment explanation
Indices: 247847--248013 Score: 146
Period size: 30 Copynumber: 5.4 Consensus size: 31
247837 CAGGTGGGTG
247847 GGCAGGCCCATTTGG-GTGTGAGGGATGGTA
1 GGCAGGCCCATTTGGCGTGTGAGGGATGGTA
* * *
247877 GGCAGGCCCATTTGGCGGGT-CGGGATAGTA
1 GGCAGGCCCATTTGGCGTGTGAGGGATGGTA
* *
247907 GGCAGGCCCATTTGGCGAGTCTGAGGGATGGTG
1 GGCAGGCCCATTTGGC--GTGTGAGGGATGGTA
* * *
247940 GGCAGGCCCATCTGCTGG-GTCTGAGGAATGGGA
1 GGCAGGCCCAT-T--TGGCGTGTGAGGGATGGTA
* * *
247973 GGCAGGCCCTTTTGAGCTTGTGA--AATGGTA
1 GGCAGGCCCATTTG-GCGTGTGAGGGATGGTA
248003 GGCAGGCCCAT
1 GGCAGGCCCAT
248014 CTTCGCCTGG
Statistics
Matches: 112, Mismatches: 16, Indels: 18
0.77 0.11 0.12
Matches are distributed among these distances:
30 57 0.51
31 4 0.04
32 7 0.06
33 40 0.36
34 1 0.01
36 3 0.03
ACGTcount: A:0.17, C:0.19, G:0.42, T:0.22
Consensus pattern (31 bp):
GGCAGGCCCATTTGGCGTGTGAGGGATGGTA
Left flanking sequence: Indices 247347 -- 247846
GCGTCTTGAGCAGCACCCCGCGCGCCACCATGGCGTTGGCCTGCTCCAAGTTCTTGATCAGCATC
GTGCGCAGCGGCGGCTCGTCGATGTTGCGCACCACGATCAGCTTGCGCTTGTCGTCGGAGACGGC
TTCCGGCGCCGCCTCCTCGGGCTGCGGGCCCGACACCGCGCGCTTGAACATCAGGAAGAAGCCCT
TGGACTCCAGCTTGGCCAGCAGCAGCAGTTCCACCAGCAGCTGCGACGTGGTGCGCTTCATGGGC
GGGGCAAACTCCTGCTGGTACTGCTGGGTGGGTGTGGGTGCCAACGGGAGCGGCTTGGTCACCGG
CAGCTGTGCCAGCCCGGGGGTGCCAATGAGCGGTTGCGACGTCAGCCGTGGCACGGTTTGCGACA
CAATCAGCAGCGCCGGCGCTGAGAACTGGGTCAGCGCCAGCTTGGGCACGGCGCGAGGAGCGTGG
GACGGGGTGGGGCCCATGGTGGGCAGGTTCAGGCCCAGGTGGGTG
Right flanking sequence: Indices 248014 -- 248513
CTTCGCCTGGGGAATCGTAGGCAGCCCTCTCACCTCCTTCTTGCCAATGCGCAACGGCTTCACCC
CGGCAAACGCCAGGTTCACCGTCAGCTCCACCGTCTTGACCCCCGCCACCAACCGCTCGTTCAAC
GTGTCCTGGCGCAACTTGGCCACCGCACAGAGGTCCGCCACCGCAAACAGCACCTCCAGCACTGC
CCGCTCCACCACCGCGCGCGGCACGAGCACTGGGTACACCGCGTAGTAGCGGGTGGCGGTCAACG
CAAAGTTGACGGCGGCTCGCACCCCCTGCGCGTGCTCGCTGGTGTTGTACTGGTGGTTCTCGCCC
TGGGCCGCCACCTCGGTCGCAAGCACCGCGAGCTTGGCCACCTTGTCGAACAACACGTCGACGTC
GGCCGCGGTGGGCAGGTGCATTGCCACGAGGAACAGCTCGATCAACGCGTGGCAGTCTGCCACCA
ACTTGATCAGCACGAGCCCGTGTCCGCTCACGAGCAGCTGCAAGT
Found at i:247944 original size:33 final size:33
Alignment explanation
Indices: 247843--247986 Score: 142
Period size: 33 Copynumber: 4.5 Consensus size: 33
247833 GGCCCAGGTG
*
247843 GGTGGGCAGGCCCATTT---GGGTGTGAGGGAT
1 GGTGGGCAGGCCCATTTGGCGGGTCTGAGGGAT
*
247873 GGTAGGCAGGCCCATTTGGCGGGTC---GGGAT
1 GGTGGGCAGGCCCATTTGGCGGGTCTGAGGGAT
* * *
247903 AGTAGGCAGGCCCATTTGGCGAGTCTGAGGGAT
1 GGTGGGCAGGCCCATTTGGCGGGTCTGAGGGAT
* *
247936 GGTGGGCAGGCCCATCT-GCTGGGTCTGAGGAAT
1 GGTGGGCAGGCCCATTTGGC-GGGTCTGAGGGAT
*
247969 GG-GAGGCAGGCCCTTTTG
1 GGTG-GGCAGGCCCATTTG
247987 AGCTTGTGAA
Statistics
Matches: 94, Mismatches: 11, Indels: 14
0.79 0.09 0.12
Matches are distributed among these distances:
30 44 0.47
32 3 0.03
33 47 0.50
ACGTcount: A:0.15, C:0.19, G:0.44, T:0.22
Consensus pattern (33 bp):
GGTGGGCAGGCCCATTTGGCGGGTCTGAGGGAT
Left flanking sequence: Indices 247343 -- 247842
GGCAGCGTCTTGAGCAGCACCCCGCGCGCCACCATGGCGTTGGCCTGCTCCAAGTTCTTGATCAG
CATCGTGCGCAGCGGCGGCTCGTCGATGTTGCGCACCACGATCAGCTTGCGCTTGTCGTCGGAGA
CGGCTTCCGGCGCCGCCTCCTCGGGCTGCGGGCCCGACACCGCGCGCTTGAACATCAGGAAGAAG
CCCTTGGACTCCAGCTTGGCCAGCAGCAGCAGTTCCACCAGCAGCTGCGACGTGGTGCGCTTCAT
GGGCGGGGCAAACTCCTGCTGGTACTGCTGGGTGGGTGTGGGTGCCAACGGGAGCGGCTTGGTCA
CCGGCAGCTGTGCCAGCCCGGGGGTGCCAATGAGCGGTTGCGACGTCAGCCGTGGCACGGTTTGC
GACACAATCAGCAGCGCCGGCGCTGAGAACTGGGTCAGCGCCAGCTTGGGCACGGCGCGAGGAGC
GTGGGACGGGGTGGGGCCCATGGTGGGCAGGTTCAGGCCCAGGTG
Right flanking sequence: Indices 247987 -- 248486
AGCTTGTGAAATGGTAGGCAGGCCCATCTTCGCCTGGGGAATCGTAGGCAGCCCTCTCACCTCCT
TCTTGCCAATGCGCAACGGCTTCACCCCGGCAAACGCCAGGTTCACCGTCAGCTCCACCGTCTTG
ACCCCCGCCACCAACCGCTCGTTCAACGTGTCCTGGCGCAACTTGGCCACCGCACAGAGGTCCGC
CACCGCAAACAGCACCTCCAGCACTGCCCGCTCCACCACCGCGCGCGGCACGAGCACTGGGTACA
CCGCGTAGTAGCGGGTGGCGGTCAACGCAAAGTTGACGGCGGCTCGCACCCCCTGCGCGTGCTCG
CTGGTGTTGTACTGGTGGTTCTCGCCCTGGGCCGCCACCTCGGTCGCAAGCACCGCGAGCTTGGC
CACCTTGTCGAACAACACGTCGACGTCGGCCGCGGTGGGCAGGTGCATTGCCACGAGGAACAGCT
CGATCAACGCGTGGCAGTCTGCCACCAACTTGATCAGCACGAGCC
Found at i:250310 original size:11 final size:13
Alignment explanation
Indices: 250286--250317 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
250276 GTGCGAAGTA
250286 GGGTAGTGAGGT-
1 GGGTAGTGAGGTG
250298 GGGTAGT-AGGTG
1 GGGTAGTGAGGTG
250310 GGGTAGTG
1 GGGTAGTG
250318 GGGATGAGAG
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
11 4 0.22
12 14 0.78
ACGTcount: A:0.16, C:0.00, G:0.59, T:0.25
Consensus pattern (13 bp):
GGGTAGTGAGGTG
Left flanking sequence: Indices 249786 -- 250285
GGCGGCGCAACTCGTCGTAGACGTCGGTGCTCAACTCGCGAAACTGCGCTGCCAGGAGTTTGAGG
AGCTTCTCGCGGGCCCGGGCGGCTCGGGTCAGGTTCAGTTTCAGCCGCGCCAGCGTGTCGTCGGA
CACGTCTAGAAACTGCTTCAACACCTTGTAGTGGTGCACTAGGTCTTTGTCACTCATCTGCCCAG
GTGGTGTGACGGGTTCTAGTTTCAGGGAAGGTCGGTGGGAGCGTGGTTGGTTGATGATTTCTCCA
GACGCGCTTTTTCAGCCAGAATTTTACTGCAGCCAGCCTTCGGGTGTGTGCAGGAGGCGGATCAG
GTGTGAGGATCCCGATCTGGGCTTATCAGGGGTGGCGGGTCGGTTGGGTCGGGTGGGGTCGGGCG
CGGTGGGGCACGGTGGGGTGTGGTTGGGTTCGGTTGGGTGGTGTCGGGGTGCCCTGTCGCTTGTT
AGTGTCTGCTTAATTGGGTATTTTAGTGCGAGGGAGTGCGAAGTA
Right flanking sequence: Indices 250318 -- 250817
GGGATGAGAGAGAGAGAAAATGTGAGATAGATAGTAGGTCAGAGTAGGGTGGGTATGGTGTGGTA
GTTAGTGTGTGTGTGTGTGATACAGTAGGGCGAGTGGATGTAGCTGTAGGTGTGAATCTGTAGGT
GTGAATCTGTAGGTGTAAATCTGTAGGTGAAACTGTAGGTGAGCAGCGTGCGGAGCCAGTGTGAA
CAGGTTCAGTGGAGCAGTGTGAGGCCGGGTGAAGCCAGCGTGCCCAATTAACCTACTATTACACC
CACTCTCCGTGTCTACCACCAGCGTTTACGAGCGTCGCCACGGCGATGCGTTGCCAGGTGGCTTC
CAACGGTTGCGGTATGACGCGTCGTGGTACCACCCGGCCAACAATGGGTTCGCTGTGGCTCGCTC
GCCATTGTCTCCCACAGCACCCCGACAATAGCACGCTGCCGTTGTCACCAGACACGACGCGCCAG
GGTGAACCACGTCTATTGTGGGCTGAAACTCCCTCATCCCGATTG
Found at i:250445 original size:14 final size:14
Alignment explanation
Indices: 250426--250488 Score: 94
Period size: 14 Copynumber: 4.6 Consensus size: 14
250416 GTGGATGTAG
250426 CTGTAGGTGTGAAT
1 CTGTAGGTGTGAAT
250440 CTGTAGGTGTGAAT
1 CTGTAGGTGTGAAT
*
250454 CTGTAGGTGTAAAT
1 CTGTAGGTGTGAAT
*
250468 CTGTA-G-GTGAAA
1 CTGTAGGTGTGAAT
250480 CTGTAGGTG
1 CTGTAGGTG
250489 AGCAGCGTGC
Statistics
Matches: 44, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
12 9 0.20
13 2 0.05
14 33 0.75
ACGTcount: A:0.24, C:0.08, G:0.35, T:0.33
Consensus pattern (14 bp):
CTGTAGGTGTGAAT
Left flanking sequence: Indices 249926 -- 250425
AACTGCTTCAACACCTTGTAGTGGTGCACTAGGTCTTTGTCACTCATCTGCCCAGGTGGTGTGAC
GGGTTCTAGTTTCAGGGAAGGTCGGTGGGAGCGTGGTTGGTTGATGATTTCTCCAGACGCGCTTT
TTCAGCCAGAATTTTACTGCAGCCAGCCTTCGGGTGTGTGCAGGAGGCGGATCAGGTGTGAGGAT
CCCGATCTGGGCTTATCAGGGGTGGCGGGTCGGTTGGGTCGGGTGGGGTCGGGCGCGGTGGGGCA
CGGTGGGGTGTGGTTGGGTTCGGTTGGGTGGTGTCGGGGTGCCCTGTCGCTTGTTAGTGTCTGCT
TAATTGGGTATTTTAGTGCGAGGGAGTGCGAAGTAGGGTAGTGAGGTGGGTAGTAGGTGGGGTAG
TGGGGATGAGAGAGAGAGAAAATGTGAGATAGATAGTAGGTCAGAGTAGGGTGGGTATGGTGTGG
TAGTTAGTGTGTGTGTGTGTGATACAGTAGGGCGAGTGGATGTAG
Right flanking sequence: Indices 250489 -- 250988
AGCAGCGTGCGGAGCCAGTGTGAACAGGTTCAGTGGAGCAGTGTGAGGCCGGGTGAAGCCAGCGT
GCCCAATTAACCTACTATTACACCCACTCTCCGTGTCTACCACCAGCGTTTACGAGCGTCGCCAC
GGCGATGCGTTGCCAGGTGGCTTCCAACGGTTGCGGTATGACGCGTCGTGGTACCACCCGGCCAA
CAATGGGTTCGCTGTGGCTCGCTCGCCATTGTCTCCCACAGCACCCCGACAATAGCACGCTGCCG
TTGTCACCAGACACGACGCGCCAGGGTGAACCACGTCTATTGTGGGCTGAAACTCCCTCATCCCG
ATTGTGCTTGGTGGTCCCTGTCGCCTATAACCGCGGTGCGTGTATTGTCGGCAAATTTTCTGCAG
AGTACATATTTCACAGGCCGCGAAGGGTCGGTGTTTACGCATGGGGCCCGCCAACGCGCCGGCTC
GAGCAGGAACCCGTGTCTATGACGGTGGGCACCGTGGGGTACCGT
Found at i:261833 original size:21 final size:21
Alignment explanation
Indices: 261807--261846 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
261797 CTCCTAAGAG
261807 GCTTTGATCGCACAATAACGC
1 GCTTTGATCGCACAATAACGC
*
261828 GCTTTGGTCGCACAATAAC
1 GCTTTGATCGCACAATAAC
261847 ACCAAGGCCC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.25
Consensus pattern (21 bp):
GCTTTGATCGCACAATAACGC
Left flanking sequence: Indices 261307 -- 261806
TTTTTCCTGATAACGCACGGTTGACCGAGGGCAACCTGGGCTAGTGTGGGGTTGTATGCACGAAG
GCCCGAGAGCCACGGTAGGGCGGGGACGGGGTCTGCGGGTAGGGGGTGGTGTGGTGTGGTGGTCT
GGGGGGTCGGGTGCCACGTGGGAGCGCGGGATCGGTGCTTTGGTTGTGTTGACCGTTGCGATCTG
CCTAATAGGGTTTAGCGATTTGACGTCGGGTAGACACGGGGTTTCGGCAGTCGCGGTTTGGTGGG
AAGGGTGAGGTTTGGGGAATCCGTAGGTTGGTGGTGACGTGGTAACGTAGGTATTTACGTTGGTG
GTACGGGTTGTGATTACGTAGTTTGTTATTGCTTGGGTTGTGTGAATTGGGTGTTCAGTGGTTTG
AATTGATAGCTTGGGTGTGTCGTGCGGCCTATTAGTGCACAGTTACAGTGTCGTTTCGAGTTGAC
GATACCGAGGAACAGTGCACTCTAACCAAGTGAGCCTCCTAAGAG
Right flanking sequence: Indices 261847 -- 262346
ACCAAGGCCCTGGTCAACACCAAGGGCCCTGGTCTTTCTTGAAGCCTATACACTCTGTAACCTGT
GTAAACCCTCGCCCGACATCGATATCCCGATTAGTCATTAATGTCGGCACCTCGATGACGCATGG
TAATTAATGGCTCTCCCTGAACCCCCGTACTACTCTGTGGTCTTCACCAGCACCACCACCGCCGA
CATCGATGCACAGCACTACAAAAACTTCTCCACCATAATGATGTTTCTCGCCAAGCTGATGCCGG
GCTTTCTTGGCGTGGATTCTGCCCGCGACGACAAATTGGGCATCACCGTGAGCTACTGGCAGGAC
CTCGAGAGCATTCGCCAGTGGAAGCAGCAGGGCGACCACAAATTGGCCCAGGAAGCAGGCAAGGC
CGAGTTCTACAAGTCGTACACTGTGCGCGTGGCCAAGGTCGAGCGCCAGTACTCTTTTGAGAAAT
AAGCACCGTAAGGCACTAGTGTATTGTTGATCGTAAAACCCGAAT
Found at i:261867 original size:18 final size:19
Alignment explanation
Indices: 261844--261880 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
261834 GTCGCACAAT
261844 AACACCAA-GGCCCTGGTC
1 AACACCAAGGGCCCTGGTC
261862 AACACCAAGGGCCCTGGTC
1 AACACCAAGGGCCCTGGTC
261881 TTTCTTGAAG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 8 0.44
19 10 0.56
ACGTcount: A:0.27, C:0.38, G:0.24, T:0.11
Consensus pattern (19 bp):
AACACCAAGGGCCCTGGTC
Left flanking sequence: Indices 261344 -- 261843
GGGCTAGTGTGGGGTTGTATGCACGAAGGCCCGAGAGCCACGGTAGGGCGGGGACGGGGTCTGCG
GGTAGGGGGTGGTGTGGTGTGGTGGTCTGGGGGGTCGGGTGCCACGTGGGAGCGCGGGATCGGTG
CTTTGGTTGTGTTGACCGTTGCGATCTGCCTAATAGGGTTTAGCGATTTGACGTCGGGTAGACAC
GGGGTTTCGGCAGTCGCGGTTTGGTGGGAAGGGTGAGGTTTGGGGAATCCGTAGGTTGGTGGTGA
CGTGGTAACGTAGGTATTTACGTTGGTGGTACGGGTTGTGATTACGTAGTTTGTTATTGCTTGGG
TTGTGTGAATTGGGTGTTCAGTGGTTTGAATTGATAGCTTGGGTGTGTCGTGCGGCCTATTAGTG
CACAGTTACAGTGTCGTTTCGAGTTGACGATACCGAGGAACAGTGCACTCTAACCAAGTGAGCCT
CCTAAGAGGCTTTGATCGCACAATAACGCGCTTTGGTCGCACAAT
Right flanking sequence: Indices 261881 -- 262380
TTTCTTGAAGCCTATACACTCTGTAACCTGTGTAAACCCTCGCCCGACATCGATATCCCGATTAG
TCATTAATGTCGGCACCTCGATGACGCATGGTAATTAATGGCTCTCCCTGAACCCCCGTACTACT
CTGTGGTCTTCACCAGCACCACCACCGCCGACATCGATGCACAGCACTACAAAAACTTCTCCACC
ATAATGATGTTTCTCGCCAAGCTGATGCCGGGCTTTCTTGGCGTGGATTCTGCCCGCGACGACAA
ATTGGGCATCACCGTGAGCTACTGGCAGGACCTCGAGAGCATTCGCCAGTGGAAGCAGCAGGGCG
ACCACAAATTGGCCCAGGAAGCAGGCAAGGCCGAGTTCTACAAGTCGTACACTGTGCGCGTGGCC
AAGGTCGAGCGCCAGTACTCTTTTGAGAAATAAGCACCGTAAGGCACTAGTGTATTGTTGATCGT
AAAACCCGAATATACAAACTCTAGATACTAGGCCGGCGACCACCG
Found at i:267769 original size:16 final size:16
Alignment explanation
Indices: 267748--267807 Score: 111
Period size: 16 Copynumber: 3.8 Consensus size: 16
267738 AAAATACCCG
*
267748 ATACATCCAAACACAC
1 ATACATCTAAACACAC
267764 ATACATCTAAACACAC
1 ATACATCTAAACACAC
267780 ATACATCTAAACACAC
1 ATACATCTAAACACAC
267796 ATACATCTAAAC
1 ATACATCTAAAC
267808 CACTACCGTA
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
16 43 1.00
ACGTcount: A:0.50, C:0.32, G:0.00, T:0.18
Consensus pattern (16 bp):
ATACATCTAAACACAC
Left flanking sequence: Indices 267248 -- 267747
TGCGGCTGTTTGAGAGAGCCTGTTGAAAAATGTGTCGCAGTTTGAAAGTGTGCCTGTACATAGTG
TTGGTTGGGTTAGGGAGCTCCTGACCAACAAATGGTTTGTTTCGTGCGGCTTAGAATCTGAAAGA
GGGGCAGGGCCGGAGAACACATGAGGGGTAGCATCGCGGGGCCGGTCGACACGACAAACGATCGT
CGAGCCCCCGGAGATAAGCAGGCGTAGTGGGACGCAACGGGCGGTAATTGGATTTAACCTGGGTG
CGTCACAATAGGCTGGTGATGGCGGAGATAGACTCCGAGACGACGCGTAATGAGACGATGGTCTT
GGCGTGACTAAAGCGATCTACACAAACAGACAATTAAGAGTTATCACAGACACTTATTCACCACA
ACAGTTACAAACACAGACAATTACTGAAACCAAACGAGTTAAACCACAGTCAACAAACCACCACA
TACATAAACCACCACAAACGTCTACCACGAACATAAAAATACCCG
Right flanking sequence: Indices 267808 -- 268307
CACTACCGTATCTAAACACCCATCTCTAACTACTAACCCCCCATACCACCCCAACAATTCCACTA
TCTCTCCTATTGTACCATAACCACCTGACCCGTAACCTCCACCTCACCTCCACCTCGTCCACCTC
ACATCACCCCCGCATCACCTCCACATCACCCACTGCGCGTCTGATGCCTTGCCTTCAGCCACGTA
ATTACCATTCGCCTCTAATTACCGTTCGCCACCTCTCGAAACGAACCCCGCCCCCGTATATACCT
GCCGCCACCACGTAACTGGACGATCGCCGTTGTCTGGCTGCGGTTACGAGCGCACCAATCGCGGC
GACCCGTTTCCAGGGTCATGTATTACGTCGAGGCACGTCATTGTTTTTTACAGGGCACCAATCGG
GATCGCGGGAAAGCGCCGTGACCCAGGGCAGGGCCCACCACCACCGCAGCCACCGTAGCCACCCA
CCACCTCTGCCACCCCGTCGCGGGCCGCCCGCTCGGAGTTTACCG
Found at i:271748 original size:3 final size:3
Alignment explanation
Indices: 271736--271764 Score: 51
Period size: 3 Copynumber: 10.0 Consensus size: 3
271726 CCATAGTAGA
271736 GTG G-G GTG GTG GTG GTG GTG GTG GTG GTG
1 GTG GTG GTG GTG GTG GTG GTG GTG GTG GTG
271765 AAGGTAACAA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
2 2 0.08
3 23 0.92
ACGTcount: A:0.00, C:0.00, G:0.69, T:0.31
Consensus pattern (3 bp):
GTG
Left flanking sequence: Indices 271236 -- 271735
GCGGCTCACCGACGAGTTTGACCAGGCGCCCAACCTGATCCACCTGCAGATGTTGTTCCACGTGT
TTGTGTTGTTGGCCACCTACCTGGTGTACGTGGCCAAGCGCAACCTGGCGCTGACCGGGGCGCCC
GACTTGTTGTTTGACTTGAACCACCGGTACTCGCAGGTGCTCAAGTTGGTGGAGCGGGTGGAGGC
CGGGTTGCGGCACCAGTACGCGGGCCACCCGGCGATGCCGCGCGGGCGGTTGGACCAGGAGTTGG
CCAACTTGTATTGTAATGGCGACGGGCCGGCGCGCAGCGGCGGGTTGGAAAAGGCGTTGTACATC
TTGAAGGTGGGCGAGCTCACCCTCCTGTACTTGTACGACACCACCGTCAAGGTGTCGATCTTCAA
GAAGCTCGCGGCGTCGTTGCTCAACATCCGCAAGTTTTTGATTGACAATGAATCTCGAATCCTTG
CCTAATGTATACGGGATATGTAATGAGTTAACGATCCATAGTAGA
Right flanking sequence: Indices 271765 -- 272264
AAGGTAACAATGTGGGACGAAGATTGGGTGGGAAGCGTGGATAGGTGAACATTGTGGGCGTAGGG
TGAAGGCGACGTTGAAAAGTGAAGGGGTAGGGTGTAGGCGTCGATGAAGATCGAAGGTGTGGGTA
TATTGGCGTCGATGAAGATCGAAGGTGTGGGGTATATTGGCGTCGATGAAGATTGAAAGTGTGTG
GAGTTTACCTTCGTAGGCCACCCGTCGTTTACCATTGTGGTTTACCATCGTACTTACCATCGTAC
CGTACCTGAAGTAGTCTGGCGTTTCAACAAACGGTGTGACTTTCCTCAAATCTCTGTCTCAACTG
AAATCAAATAACGGAAACAAGTTCCGGGAGTCAGCACTACCCTTAAGTAAGAACCCAAACACACA
ACAAGATATTTGCTTGCCAATGACGCCCTCCACCACCCACCAGAGCCAACAACTCCGTCGCCAAT
GTAAGCGCAGTGTCGCAACTACCCCAGGTTTTCGCAGCCACCAGG
Found at i:271886 original size:32 final size:33
Alignment explanation
Indices: 271850--271956 Score: 137
Period size: 34 Copynumber: 3.2 Consensus size: 33
271840 GTTGAAAAGT
* *
271850 GAAGGGGTAGGGTGTA-GGCGTCGATGAAGATC
1 GAAGGTGTAGGGTATATGGCGTCGATGAAGATC
271882 GAAGGTGT-GGGTATATTGGCGTCGATGAAGATC
1 GAAGGTGTAGGGTATA-TGGCGTCGATGAAGATC
* *
271915 GAAGGTGTGGGGTATATTGGCGTCGATGAAGATT
1 GAAGGTGTAGGGTATA-TGGCGTCGATGAAGATC
*
271949 GAAAGTGT
1 GAAGGTGT
271957 GTGGAGTTTA
Statistics
Matches: 68, Mismatches: 4, Indels: 4
0.89 0.05 0.05
Matches are distributed among these distances:
31 6 0.09
32 7 0.10
33 24 0.35
34 31 0.46
ACGTcount: A:0.25, C:0.07, G:0.42, T:0.25
Consensus pattern (33 bp):
GAAGGTGTAGGGTATATGGCGTCGATGAAGATC
Left flanking sequence: Indices 271350 -- 271849
GCTGACCGGGGCGCCCGACTTGTTGTTTGACTTGAACCACCGGTACTCGCAGGTGCTCAAGTTGG
TGGAGCGGGTGGAGGCCGGGTTGCGGCACCAGTACGCGGGCCACCCGGCGATGCCGCGCGGGCGG
TTGGACCAGGAGTTGGCCAACTTGTATTGTAATGGCGACGGGCCGGCGCGCAGCGGCGGGTTGGA
AAAGGCGTTGTACATCTTGAAGGTGGGCGAGCTCACCCTCCTGTACTTGTACGACACCACCGTCA
AGGTGTCGATCTTCAAGAAGCTCGCGGCGTCGTTGCTCAACATCCGCAAGTTTTTGATTGACAAT
GAATCTCGAATCCTTGCCTAATGTATACGGGATATGTAATGAGTTAACGATCCATAGTAGAGTGG
GGTGGTGGTGGTGGTGGTGGTGGTGAAGGTAACAATGTGGGACGAAGATTGGGTGGGAAGCGTGG
ATAGGTGAACATTGTGGGCGTAGGGTGAAGGCGACGTTGAAAAGT
Right flanking sequence: Indices 271957 -- 272456
GTGGAGTTTACCTTCGTAGGCCACCCGTCGTTTACCATTGTGGTTTACCATCGTACTTACCATCG
TACCGTACCTGAAGTAGTCTGGCGTTTCAACAAACGGTGTGACTTTCCTCAAATCTCTGTCTCAA
CTGAAATCAAATAACGGAAACAAGTTCCGGGAGTCAGCACTACCCTTAAGTAAGAACCCAAACAC
ACAACAAGATATTTGCTTGCCAATGACGCCCTCCACCACCCACCAGAGCCAACAACTCCGTCGCC
AATGTAAGCGCAGTGTCGCAACTACCCCAGGTTTTCGCAGCCACCAGGAGGTCTTGTGAATTTAA
GGTCACCAGCGAAAAAGCGTTGGGGGGTCTGGGGGGCGCCGCTTGCGGCCCCCCAGCTGCAAGCC
ACGCGTTGGGTGGGTTTGAAGGCGTATCATGGTGGAAAAGTACGCGGAGGCTAGGTGAAATTTGG
TGTGGGATGAAGATTGAAGGCGTATGGTGGTCGAACTAGGGGTGG
Found at i:271933 original size:34 final size:34
Alignment explanation
Indices: 271866--271957 Score: 159
Period size: 34 Copynumber: 2.7 Consensus size: 34
271856 GTAGGGTGTA
271866 GGCGTCGATGAAGATCGAAGGTGT-GGGTATATT
1 GGCGTCGATGAAGATCGAAGGTGTGGGGTATATT
271899 GGCGTCGATGAAGATCGAAGGTGTGGGGTATATT
1 GGCGTCGATGAAGATCGAAGGTGTGGGGTATATT
* *
271933 GGCGTCGATGAAGATTGAAAGTGTG
1 GGCGTCGATGAAGATCGAAGGTGTG
271958 TGGAGTTTAC
Statistics
Matches: 56, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
33 24 0.43
34 32 0.57
ACGTcount: A:0.25, C:0.09, G:0.40, T:0.26
Consensus pattern (34 bp):
GGCGTCGATGAAGATCGAAGGTGTGGGGTATATT
Left flanking sequence: Indices 271366 -- 271865
GACTTGTTGTTTGACTTGAACCACCGGTACTCGCAGGTGCTCAAGTTGGTGGAGCGGGTGGAGGC
CGGGTTGCGGCACCAGTACGCGGGCCACCCGGCGATGCCGCGCGGGCGGTTGGACCAGGAGTTGG
CCAACTTGTATTGTAATGGCGACGGGCCGGCGCGCAGCGGCGGGTTGGAAAAGGCGTTGTACATC
TTGAAGGTGGGCGAGCTCACCCTCCTGTACTTGTACGACACCACCGTCAAGGTGTCGATCTTCAA
GAAGCTCGCGGCGTCGTTGCTCAACATCCGCAAGTTTTTGATTGACAATGAATCTCGAATCCTTG
CCTAATGTATACGGGATATGTAATGAGTTAACGATCCATAGTAGAGTGGGGTGGTGGTGGTGGTG
GTGGTGGTGAAGGTAACAATGTGGGACGAAGATTGGGTGGGAAGCGTGGATAGGTGAACATTGTG
GGCGTAGGGTGAAGGCGACGTTGAAAAGTGAAGGGGTAGGGTGTA
Right flanking sequence: Indices 271958 -- 272457
TGGAGTTTACCTTCGTAGGCCACCCGTCGTTTACCATTGTGGTTTACCATCGTACTTACCATCGT
ACCGTACCTGAAGTAGTCTGGCGTTTCAACAAACGGTGTGACTTTCCTCAAATCTCTGTCTCAAC
TGAAATCAAATAACGGAAACAAGTTCCGGGAGTCAGCACTACCCTTAAGTAAGAACCCAAACACA
CAACAAGATATTTGCTTGCCAATGACGCCCTCCACCACCCACCAGAGCCAACAACTCCGTCGCCA
ATGTAAGCGCAGTGTCGCAACTACCCCAGGTTTTCGCAGCCACCAGGAGGTCTTGTGAATTTAAG
GTCACCAGCGAAAAAGCGTTGGGGGGTCTGGGGGGCGCCGCTTGCGGCCCCCCAGCTGCAAGCCA
CGCGTTGGGTGGGTTTGAAGGCGTATCATGGTGGAAAAGTACGCGGAGGCTAGGTGAAATTTGGT
GTGGGATGAAGATTGAAGGCGTATGGTGGTCGAACTAGGGGTGGA
Found at i:272609 original size:20 final size:21
Alignment explanation
Indices: 272569--272629 Score: 79
Period size: 21 Copynumber: 3.0 Consensus size: 21
272559 TGGGATGGGT
*
272569 GAGAATTGTTGGCGTGGGACG
1 GAGAATGGTTGGCGTGGGACG
272590 GAGAATGGTTGGCG-GGGACG
1 GAGAATGGTTGGCGTGGGACG
* * *
272610 AAGATTGGTTCGCGTGGGAC
1 GAGAATGGTTGGCGTGGGAC
272630 CAACTATGAA
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
20 17 0.49
21 18 0.51
ACGTcount: A:0.20, C:0.11, G:0.48, T:0.21
Consensus pattern (21 bp):
GAGAATGGTTGGCGTGGGACG
Left flanking sequence: Indices 272069 -- 272568
CTCAAATCTCTGTCTCAACTGAAATCAAATAACGGAAACAAGTTCCGGGAGTCAGCACTACCCTT
AAGTAAGAACCCAAACACACAACAAGATATTTGCTTGCCAATGACGCCCTCCACCACCCACCAGA
GCCAACAACTCCGTCGCCAATGTAAGCGCAGTGTCGCAACTACCCCAGGTTTTCGCAGCCACCAG
GAGGTCTTGTGAATTTAAGGTCACCAGCGAAAAAGCGTTGGGGGGTCTGGGGGGCGCCGCTTGCG
GCCCCCCAGCTGCAAGCCACGCGTTGGGTGGGTTTGAAGGCGTATCATGGTGGAAAAGTACGCGG
AGGCTAGGTGAAATTTGGTGTGGGATGAAGATTGAAGGCGTATGGTGGTCGAACTAGGGGTGGAT
GAAGAATACCGGTGTCGAAAGGGTGCAAATAGTTAGCTTGGCATGGGTGTAGACTGCAGGCGGGT
TGAACCGTAGGCATGGGGAGATGACAATGATCAGCTGGGATGGGT
Right flanking sequence: Indices 272630 -- 273129
CAACTATGAAGGCGTATAGCGTATGGTATTGTGTGCGTAGACAGAGGATTGCTGGCGTTGGTGGT
GTAAATCTTGGACGTGGGATGAAGAATGAGGGGTATAATGGTTGTGGGCGACATGGTGAAACCTG
TAGGTGGGATGTGTGACTATGGTAGGCGTGGAATGGTGAGAATTGTAGGCTTAGCTGGAGTAGCC
TCGTGCGCAGGCTGGCCTACAATCTTGGCGTACATTCGTGGGATGGCTTACGATTATTTTGGACG
TCGTGATCGTGGAGATCGTGGCATATGATTCTAGACGTACGATCGCAGGCAAGATCGTGGCACAT
GATTATGGACGTACGATCGTAGGAAAGATCGTGGCATATGATTACGGACGTACGATCTTCCGCGT
ACGATCTTGGGCGTACGATCGTGGCCTGGGGTGAGGACGAAGGGGGTGGCTGTGATGGTACGAGG
TATTTTATCGGTACCCCTGGGGACAGGGTGGAGAGGTGGGGTGGC
Found at i:272945 original size:39 final size:39
Alignment explanation
Indices: 272902--273011 Score: 159
Period size: 39 Copynumber: 2.8 Consensus size: 39
272892 GTGATCGTGG
* *
272902 AGATCGTGGCATATGATTCTAGACGTACGATCGCAGGCA
1 AGATCGTGGCATATGATTCTGGACGTACGATCGCAGGAA
* * *
272941 AGATCGTGGCACATGATTATGGACGTACGATCGTAGGAA
1 AGATCGTGGCATATGATTCTGGACGTACGATCGCAGGAA
272980 AGATCGTGGCATATGATTAC-GGACGTACGATC
1 AGATCGTGGCATATGATT-CTGGACGTACGATC
273012 TTCCGCGTAC
Statistics
Matches: 63, Mismatches: 7, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
39 63 1.00
ACGTcount: A:0.29, C:0.18, G:0.29, T:0.24
Consensus pattern (39 bp):
AGATCGTGGCATATGATTCTGGACGTACGATCGCAGGAA
Left flanking sequence: Indices 272402 -- 272901
TGAAATTTGGTGTGGGATGAAGATTGAAGGCGTATGGTGGTCGAACTAGGGGTGGATGAAGAATA
CCGGTGTCGAAAGGGTGCAAATAGTTAGCTTGGCATGGGTGTAGACTGCAGGCGGGTTGAACCGT
AGGCATGGGGAGATGACAATGATCAGCTGGGATGGGTGAGAATTGTTGGCGTGGGACGGAGAATG
GTTGGCGGGGACGAAGATTGGTTCGCGTGGGACCAACTATGAAGGCGTATAGCGTATGGTATTGT
GTGCGTAGACAGAGGATTGCTGGCGTTGGTGGTGTAAATCTTGGACGTGGGATGAAGAATGAGGG
GTATAATGGTTGTGGGCGACATGGTGAAACCTGTAGGTGGGATGTGTGACTATGGTAGGCGTGGA
ATGGTGAGAATTGTAGGCTTAGCTGGAGTAGCCTCGTGCGCAGGCTGGCCTACAATCTTGGCGTA
CATTCGTGGGATGGCTTACGATTATTTTGGACGTCGTGATCGTGG
Right flanking sequence: Indices 273012 -- 273511
TTCCGCGTACGATCTTGGGCGTACGATCGTGGCCTGGGGTGAGGACGAAGGGGGTGGCTGTGATG
GTACGAGGTATTTTATCGGTACCCCTGGGGACAGGGTGGAGAGGTGGGGTGGCGAGGTGGGGTGG
AGAGGTGGGATGGTACATTGAAAAGCAGAAAAGTGGTGGGAAAAGGCAGAAAAGTAGTAGAAAAA
AGCAGAATGCTGTGAAGAAGCAGGGAATTACCCGTTTGGGCGGGCCTACTTCGTACCTGTGGGAG
TGTGTACAAACAGTCGATAGGCCCGACTGACAACGACTAGTTCCATTGTCGTCGTAAACCATAGT
GTCCTGGGCTTTATAGCGTGCTGCCGACGTGTTATTGTGGGCTGTGCCCGTGTCCGACAAAACCT
GTGTCCAAGCCCATCGACTGTTCTTTCGTCCTGTGTCCGGGCCATCGAAGGTTGTAGTGTTCGGT
CAGTGTCCAGTGCGTGTCCAGTGCGTGTCCCGTGCGTGTCACCGT
Found at i:273022 original size:14 final size:14
Alignment explanation
Indices: 273003--273039 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
272993 TGATTACGGA
273003 CGTACGATCTTCCG
1 CGTACGATCTTCCG
**
273017 CGTACGATCTTGGG
1 CGTACGATCTTCCG
273031 CGTACGATC
1 CGTACGATC
273040 GTGGCCTGGG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.16, C:0.30, G:0.27, T:0.27
Consensus pattern (14 bp):
CGTACGATCTTCCG
Left flanking sequence: Indices 272503 -- 273002
GGGTGTAGACTGCAGGCGGGTTGAACCGTAGGCATGGGGAGATGACAATGATCAGCTGGGATGGG
TGAGAATTGTTGGCGTGGGACGGAGAATGGTTGGCGGGGACGAAGATTGGTTCGCGTGGGACCAA
CTATGAAGGCGTATAGCGTATGGTATTGTGTGCGTAGACAGAGGATTGCTGGCGTTGGTGGTGTA
AATCTTGGACGTGGGATGAAGAATGAGGGGTATAATGGTTGTGGGCGACATGGTGAAACCTGTAG
GTGGGATGTGTGACTATGGTAGGCGTGGAATGGTGAGAATTGTAGGCTTAGCTGGAGTAGCCTCG
TGCGCAGGCTGGCCTACAATCTTGGCGTACATTCGTGGGATGGCTTACGATTATTTTGGACGTCG
TGATCGTGGAGATCGTGGCATATGATTCTAGACGTACGATCGCAGGCAAGATCGTGGCACATGAT
TATGGACGTACGATCGTAGGAAAGATCGTGGCATATGATTACGGA
Right flanking sequence: Indices 273040 -- 273539
GTGGCCTGGGGTGAGGACGAAGGGGGTGGCTGTGATGGTACGAGGTATTTTATCGGTACCCCTGG
GGACAGGGTGGAGAGGTGGGGTGGCGAGGTGGGGTGGAGAGGTGGGATGGTACATTGAAAAGCAG
AAAAGTGGTGGGAAAAGGCAGAAAAGTAGTAGAAAAAAGCAGAATGCTGTGAAGAAGCAGGGAAT
TACCCGTTTGGGCGGGCCTACTTCGTACCTGTGGGAGTGTGTACAAACAGTCGATAGGCCCGACT
GACAACGACTAGTTCCATTGTCGTCGTAAACCATAGTGTCCTGGGCTTTATAGCGTGCTGCCGAC
GTGTTATTGTGGGCTGTGCCCGTGTCCGACAAAACCTGTGTCCAAGCCCATCGACTGTTCTTTCG
TCCTGTGTCCGGGCCATCGAAGGTTGTAGTGTTCGGTCAGTGTCCAGTGCGTGTCCAGTGCGTGT
CCCGTGCGTGTCACCGTGTCCTGTGCGAGTCATCGTCGCACCCTG
Found at i:273128 original size:13 final size:13
Alignment explanation
Indices: 273110--273150 Score: 73
Period size: 13 Copynumber: 3.2 Consensus size: 13
273100 CCTGGGGACA
273110 GGGTGGAGAGGTG
1 GGGTGGAGAGGTG
*
273123 GGGTGGCGAGGTG
1 GGGTGGAGAGGTG
273136 GGGTGGAGAGGTG
1 GGGTGGAGAGGTG
273149 GG
1 GG
273151 ATGGTACATT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
13 26 1.00
ACGTcount: A:0.12, C:0.02, G:0.71, T:0.15
Consensus pattern (13 bp):
GGGTGGAGAGGTG
Left flanking sequence: Indices 272610 -- 273109
AAGATTGGTTCGCGTGGGACCAACTATGAAGGCGTATAGCGTATGGTATTGTGTGCGTAGACAGA
GGATTGCTGGCGTTGGTGGTGTAAATCTTGGACGTGGGATGAAGAATGAGGGGTATAATGGTTGT
GGGCGACATGGTGAAACCTGTAGGTGGGATGTGTGACTATGGTAGGCGTGGAATGGTGAGAATTG
TAGGCTTAGCTGGAGTAGCCTCGTGCGCAGGCTGGCCTACAATCTTGGCGTACATTCGTGGGATG
GCTTACGATTATTTTGGACGTCGTGATCGTGGAGATCGTGGCATATGATTCTAGACGTACGATCG
CAGGCAAGATCGTGGCACATGATTATGGACGTACGATCGTAGGAAAGATCGTGGCATATGATTAC
GGACGTACGATCTTCCGCGTACGATCTTGGGCGTACGATCGTGGCCTGGGGTGAGGACGAAGGGG
GTGGCTGTGATGGTACGAGGTATTTTATCGGTACCCCTGGGGACA
Right flanking sequence: Indices 273151 -- 273650
ATGGTACATTGAAAAGCAGAAAAGTGGTGGGAAAAGGCAGAAAAGTAGTAGAAAAAAGCAGAATG
CTGTGAAGAAGCAGGGAATTACCCGTTTGGGCGGGCCTACTTCGTACCTGTGGGAGTGTGTACAA
ACAGTCGATAGGCCCGACTGACAACGACTAGTTCCATTGTCGTCGTAAACCATAGTGTCCTGGGC
TTTATAGCGTGCTGCCGACGTGTTATTGTGGGCTGTGCCCGTGTCCGACAAAACCTGTGTCCAAG
CCCATCGACTGTTCTTTCGTCCTGTGTCCGGGCCATCGAAGGTTGTAGTGTTCGGTCAGTGTCCA
GTGCGTGTCCAGTGCGTGTCCCGTGCGTGTCACCGTGTCCTGTGCGAGTCATCGTCGCACCCTGT
GCCTACTTCCAGTGTCCCGGTGTGTCTAATTTCATGCCTCCCAGCGACGCGATGAGTGGTTACCC
AACATTTGCCCCGCGGTCCCCCAGTACGTCACTGTTCCATCCGCT
Found at i:273204 original size:20 final size:20
Alignment explanation
Indices: 273161--273213 Score: 61
Period size: 21 Copynumber: 2.5 Consensus size: 20
273151 ATGGTACATT
* *
273161 GAAAAGCAGAAAAGTGGTGG
1 GAAAAGCAGAAAAGTAGTGA
273181 GAAAAGGCAGAAAAGTAGTAGA
1 GAAAA-GCAGAAAAGTAGT-GA
*
273203 AAAAAGCAGAA
1 GAAAAGCAGAA
273214 TGCTGTGAAG
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
20 5 0.18
21 18 0.64
22 5 0.18
ACGTcount: A:0.55, C:0.06, G:0.32, T:0.08
Consensus pattern (20 bp):
GAAAAGCAGAAAAGTAGTGA
Left flanking sequence: Indices 272661 -- 273160
TGTGCGTAGACAGAGGATTGCTGGCGTTGGTGGTGTAAATCTTGGACGTGGGATGAAGAATGAGG
GGTATAATGGTTGTGGGCGACATGGTGAAACCTGTAGGTGGGATGTGTGACTATGGTAGGCGTGG
AATGGTGAGAATTGTAGGCTTAGCTGGAGTAGCCTCGTGCGCAGGCTGGCCTACAATCTTGGCGT
ACATTCGTGGGATGGCTTACGATTATTTTGGACGTCGTGATCGTGGAGATCGTGGCATATGATTC
TAGACGTACGATCGCAGGCAAGATCGTGGCACATGATTATGGACGTACGATCGTAGGAAAGATCG
TGGCATATGATTACGGACGTACGATCTTCCGCGTACGATCTTGGGCGTACGATCGTGGCCTGGGG
TGAGGACGAAGGGGGTGGCTGTGATGGTACGAGGTATTTTATCGGTACCCCTGGGGACAGGGTGG
AGAGGTGGGGTGGCGAGGTGGGGTGGAGAGGTGGGATGGTACATT
Right flanking sequence: Indices 273214 -- 273713
TGCTGTGAAGAAGCAGGGAATTACCCGTTTGGGCGGGCCTACTTCGTACCTGTGGGAGTGTGTAC
AAACAGTCGATAGGCCCGACTGACAACGACTAGTTCCATTGTCGTCGTAAACCATAGTGTCCTGG
GCTTTATAGCGTGCTGCCGACGTGTTATTGTGGGCTGTGCCCGTGTCCGACAAAACCTGTGTCCA
AGCCCATCGACTGTTCTTTCGTCCTGTGTCCGGGCCATCGAAGGTTGTAGTGTTCGGTCAGTGTC
CAGTGCGTGTCCAGTGCGTGTCCCGTGCGTGTCACCGTGTCCTGTGCGAGTCATCGTCGCACCCT
GTGCCTACTTCCAGTGTCCCGGTGTGTCTAATTTCATGCCTCCCAGCGACGCGATGAGTGGTTAC
CCAACATTTGCCCCGCGGTCCCCCAGTACGTCACTGTTCCATCCGCTTCGAAGCAGTCTTTGCGC
CACAGTTTAGGCTTTTAAGCAGAGATAGGAGTTACTAGATCACCG
Found at i:273483 original size:11 final size:11
Alignment explanation
Indices: 273469--273506 Score: 67
Period size: 11 Copynumber: 3.5 Consensus size: 11
273459 TGTTCGGTCA
273469 GTGTCCAGTGC
1 GTGTCCAGTGC
273480 GTGTCCAGTGC
1 GTGTCCAGTGC
*
273491 GTGTCCCGTGC
1 GTGTCCAGTGC
273502 GTGTC
1 GTGTC
273507 ACCGTGTCCT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
11 26 1.00
ACGTcount: A:0.05, C:0.29, G:0.37, T:0.29
Consensus pattern (11 bp):
GTGTCCAGTGC
Left flanking sequence: Indices 272969 -- 273468
GATCGTAGGAAAGATCGTGGCATATGATTACGGACGTACGATCTTCCGCGTACGATCTTGGGCGT
ACGATCGTGGCCTGGGGTGAGGACGAAGGGGGTGGCTGTGATGGTACGAGGTATTTTATCGGTAC
CCCTGGGGACAGGGTGGAGAGGTGGGGTGGCGAGGTGGGGTGGAGAGGTGGGATGGTACATTGAA
AAGCAGAAAAGTGGTGGGAAAAGGCAGAAAAGTAGTAGAAAAAAGCAGAATGCTGTGAAGAAGCA
GGGAATTACCCGTTTGGGCGGGCCTACTTCGTACCTGTGGGAGTGTGTACAAACAGTCGATAGGC
CCGACTGACAACGACTAGTTCCATTGTCGTCGTAAACCATAGTGTCCTGGGCTTTATAGCGTGCT
GCCGACGTGTTATTGTGGGCTGTGCCCGTGTCCGACAAAACCTGTGTCCAAGCCCATCGACTGTT
CTTTCGTCCTGTGTCCGGGCCATCGAAGGTTGTAGTGTTCGGTCA
Right flanking sequence: Indices 273507 -- 274006
ACCGTGTCCTGTGCGAGTCATCGTCGCACCCTGTGCCTACTTCCAGTGTCCCGGTGTGTCTAATT
TCATGCCTCCCAGCGACGCGATGAGTGGTTACCCAACATTTGCCCCGCGGTCCCCCAGTACGTCA
CTGTTCCATCCGCTTCGAAGCAGTCTTTGCGCCACAGTTTAGGCTTTTAAGCAGAGATAGGAGTT
ACTAGATCACCGGGGGATCGCAACAATCATGGGGTACACAACAAGGCGCATTGTTGAGCCCAGGT
GTGGGATCGACAAATTTCACCGTCTAGCAGCGGACTCGTAGATACTCGACGCAAATGCAAAAGCA
ATCAGGGGTAACTGACGACGACGCGGCGGCCCGGTTTCGCTGCCGACGCCGCCACGCAGGCCACG
GGTCCAACAAAGAAAATTAGAGTTTGACCGGGGCTATATGTAGAATAACGGGCGATGCGGTGTCG
CCAAACAACAATCGATCGTTCGACCACCCCCCAGAATGGGGTGAT
Found at i:273514 original size:19 final size:19
Alignment explanation
Indices: 273490--273526 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
273480 GTGTCCAGTG
*
273490 CGTGTCCCGTGCGTGTCAC
1 CGTGTCCCGTGCGAGTCAC
*
273509 CGTGTCCTGTGCGAGTCA
1 CGTGTCCCGTGCGAGTCA
273527 TCGTCGCACC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.08, C:0.32, G:0.32, T:0.27
Consensus pattern (19 bp):
CGTGTCCCGTGCGAGTCAC
Left flanking sequence: Indices 272990 -- 273489
ATATGATTACGGACGTACGATCTTCCGCGTACGATCTTGGGCGTACGATCGTGGCCTGGGGTGAG
GACGAAGGGGGTGGCTGTGATGGTACGAGGTATTTTATCGGTACCCCTGGGGACAGGGTGGAGAG
GTGGGGTGGCGAGGTGGGGTGGAGAGGTGGGATGGTACATTGAAAAGCAGAAAAGTGGTGGGAAA
AGGCAGAAAAGTAGTAGAAAAAAGCAGAATGCTGTGAAGAAGCAGGGAATTACCCGTTTGGGCGG
GCCTACTTCGTACCTGTGGGAGTGTGTACAAACAGTCGATAGGCCCGACTGACAACGACTAGTTC
CATTGTCGTCGTAAACCATAGTGTCCTGGGCTTTATAGCGTGCTGCCGACGTGTTATTGTGGGCT
GTGCCCGTGTCCGACAAAACCTGTGTCCAAGCCCATCGACTGTTCTTTCGTCCTGTGTCCGGGCC
ATCGAAGGTTGTAGTGTTCGGTCAGTGTCCAGTGCGTGTCCAGTG
Right flanking sequence: Indices 273527 -- 274026
TCGTCGCACCCTGTGCCTACTTCCAGTGTCCCGGTGTGTCTAATTTCATGCCTCCCAGCGACGCG
ATGAGTGGTTACCCAACATTTGCCCCGCGGTCCCCCAGTACGTCACTGTTCCATCCGCTTCGAAG
CAGTCTTTGCGCCACAGTTTAGGCTTTTAAGCAGAGATAGGAGTTACTAGATCACCGGGGGATCG
CAACAATCATGGGGTACACAACAAGGCGCATTGTTGAGCCCAGGTGTGGGATCGACAAATTTCAC
CGTCTAGCAGCGGACTCGTAGATACTCGACGCAAATGCAAAAGCAATCAGGGGTAACTGACGACG
ACGCGGCGGCCCGGTTTCGCTGCCGACGCCGCCACGCAGGCCACGGGTCCAACAAAGAAAATTAG
AGTTTGACCGGGGCTATATGTAGAATAACGGGCGATGCGGTGTCGCCAAACAACAATCGATCGTT
CGACCACCCCCCAGAATGGGGTGATGCGGTAGAGGCCACCCCCGT
Found at i:277060 original size:16 final size:16
Alignment explanation
Indices: 277039--277143 Score: 99
Period size: 16 Copynumber: 6.7 Consensus size: 16
277029 GTGGCTAGTT
*
277039 TACCTGGCTAATACGA
1 TACCTGGCTACTACGA
*
277055 TACCTGGCTATTACGA
1 TACCTGGCTACTACGA
*
277071 TACCTGACTACTATC-A
1 TACCTGGCTACTA-CGA
*
277087 TAACTGGCTACT--GA
1 TACCTGGCTACTACGA
*
277101 TACCTGGCTAGTACGA
1 TACCTGGCTACTACGA
** *
277117 TACCTACCTAGTACGA
1 TACCTGGCTACTACGA
*
277133 TACCTAGCTAC
1 TACCTGGCTAC
277144 CTGGCTCGTT
Statistics
Matches: 74, Mismatches: 11, Indels: 8
0.80 0.12 0.09
Matches are distributed among these distances:
14 11 0.15
16 62 0.84
17 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.28
Consensus pattern (16 bp):
TACCTGGCTACTACGA
Left flanking sequence: Indices 276539 -- 277038
GAACAGAAGCGGTTGAACCACTCGCACCTGGAGCAGAAGCGCCGCAAGTTGTGCAAGTTGGCGTA
CGAGCGGTGTTTGCGGCTCATCATCGACATTGACAAGTTCAACGCGTTGCCGCCCAAGTCGGCGG
ACGAGCGCCCGCTGAAGCTGAAGCGTGCGCGCGTCAACAAGGACGGGTTGCCCAACTTGCTGAAG
CACACGGCGTTGATCCGCATCTCCAACGAAATCACCACCATCCAGGGCAAGAACGAGCAGTTGAA
GCGGTTGCTCGCGCAGTACCTGTGAACCCCCCACGCTTATGACTAACGAAGGACATTTATAGAAT
AGGAAGACGATAATAGAACGCGGATACAGGGAAAAAGTGTAGTAGTGGTGGGTGGCTAGTGGCTA
GGGGTTACCGGGCCAAGTGGCTAATAACGGGATACTAGCAGGAGCTGGTGGCTAGTAGAGGAAGC
TAGTACTGGCTAGGCGGTGTTTTGGCTGCAGCGTTGTGGCTAGTT
Right flanking sequence: Indices 277144 -- 277643
CTGGCTCGTTTCAACCTACCAGTAGCTCTAATCGAGCATACATGGCTGCTATTGTGGATTGTAAT
TGTAGTATCTGTAGCTTCGTAACTGTCTTTCCTATCTTCACTTTACCGCTCACCCCTTCATTACC
CCTTTTCTTCCACCACTGACCTCCGAACCCGTCCCCATTCGTCGCGCTAGCCTGATTTTGTGACG
GAATACACCTCTCCTCGATACGACGCCCTGCGACCCCTGAACACCGCTTGCATTGTGAGGTCACA
CCATTGATGGCGTGCCTTAATATAGGAGATAGTTACGATAAACCCCGTAACGTGCATAAATCTAT
GGGGGAGCTGCAGCGCGGTGGTGCTGCTGTCCAGGCGCCAGGGAGCAAAAAGAGACTTTAATTTC
TTTGTGGCCGGGCTATGTGCCCGAATGATCTGCAGCATCCTCGGTAAGTGGCACGTCGAGTGGCC
CCGCCACCTGTTTCATCTATATGAAATGACGTGGCGGGGTGCATG
Found at i:278679 original size:13 final size:12
Alignment explanation
Indices: 278663--278719 Score: 71
Period size: 13 Copynumber: 4.7 Consensus size: 12
278653 TCTCTTCATG
278663 TACACTCTTACTC
1 TACACTCTT-CTC
278676 TACACTCTTTCTC
1 TACACTC-TTCTC
278689 TACACTCTTC-C
1 TACACTCTTCTC
* *
278700 TAAACTCTCCTC
1 TACACTCTTCTC
278712 TACACTCT
1 TACACTCT
278720 ATTCAAAGAC
Statistics
Matches: 39, Mismatches: 3, Indels: 5
0.83 0.06 0.11
Matches are distributed among these distances:
11 9 0.23
12 11 0.28
13 17 0.44
14 2 0.05
ACGTcount: A:0.21, C:0.40, G:0.00, T:0.39
Consensus pattern (12 bp):
TACACTCTTCTC
Left flanking sequence: Indices 278163 -- 278662
TTGACAGTGACTCGGTAGAGGTTATGCTGGAATATGCGGACTCGTTTGAGCAAATGGCCGGGGTC
TCGCCTCGCAAACCGCAATCGTCGGGAGGGTCCGCGAGATACGAGTGAACACGCCACCGGGAGAT
CGGCACGGCAACTTACGGCTAACCCCGCCGGGTAATGTGGGACGGGGGTCAAGTGGAACCGATGG
AAGGTTTGGTGTATTGTCTCGGTTTTGTATTTTTTGTGGAATCTTGCCCAATTTGGGGAGAAAGT
GGTTGTAGCAGGGAGGAACGGTGCGGGACGAGTGGCGTGAGACATAGTGCTGGAATGTTTCTAGT
GTCAATTGGGTTTCATAATAATGGAGGTTGGAGGGGTGATAGTTTTCCAGCCAATAGATTACACG
CATATGGGTGACTAAGCCATGGTTCATCTGAGTATGAGCCCTCTTCTGAATCAACGCAAGAACTG
CAAACAATGTCACATTCCTTCCATACCAATTCTTCTCTCTTCATG
Right flanking sequence: Indices 278720 -- 279219
ATTCAAAGACATTCCGAGCTCTTTCCGCGGATCACCACAACCCACCAAACAATACCCCAGTAGGA
CAACCAAACCAACCACACAATACACCACACATTACACCACACAATCAACCACACACTACACAACA
ACACAACCACACAACCATCCACACCACCCAACCACACCACCTATCCCAACACCACCCAAATGCCC
ACCTCTACACGTCCCATCACCACTTACACGCGTTTTTCACGCGTTGAAAATCACCTCCACCAACA
TGCCTCCCCCGATACCCAAGTCGCTCGAGAGCCACCCAGCGCACCAGTTGAGCATCGGGCTGCCC
GAGATGGTGGCGTCGCTCGCCAGACTCCACCCGGTGACGCTTCCCAACCACGGCAGTCTCCAGAC
CGACGCCCTCGTGGCGTTGCGGACGCTGCCCACCTACATCTACGTGGTGCTGTGGTTGTATCAGT
GTCGCGGCTACATCAAGCTCCACAACGAGTACTTTGACGTGGACA
Found at i:278692 original size:26 final size:23
Alignment explanation
Indices: 278663--278719 Score: 69
Period size: 23 Copynumber: 2.3 Consensus size: 23
278653 TCTCTTCATG
* *
278663 TACACTCTTACTCTACACTCTTTCTC
1 TACACTCTT-C-CTAAACTC-TCCTC
278689 TACACTCTTCCTAAACTCTCCTC
1 TACACTCTTCCTAAACTCTCCTC
278712 TACACTCT
1 TACACTCT
278720 ATTCAAAGAC
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
23 12 0.41
24 7 0.24
25 1 0.03
26 9 0.31
ACGTcount: A:0.21, C:0.40, G:0.00, T:0.39
Consensus pattern (23 bp):
TACACTCTTCCTAAACTCTCCTC
Left flanking sequence: Indices 278163 -- 278662
TTGACAGTGACTCGGTAGAGGTTATGCTGGAATATGCGGACTCGTTTGAGCAAATGGCCGGGGTC
TCGCCTCGCAAACCGCAATCGTCGGGAGGGTCCGCGAGATACGAGTGAACACGCCACCGGGAGAT
CGGCACGGCAACTTACGGCTAACCCCGCCGGGTAATGTGGGACGGGGGTCAAGTGGAACCGATGG
AAGGTTTGGTGTATTGTCTCGGTTTTGTATTTTTTGTGGAATCTTGCCCAATTTGGGGAGAAAGT
GGTTGTAGCAGGGAGGAACGGTGCGGGACGAGTGGCGTGAGACATAGTGCTGGAATGTTTCTAGT
GTCAATTGGGTTTCATAATAATGGAGGTTGGAGGGGTGATAGTTTTCCAGCCAATAGATTACACG
CATATGGGTGACTAAGCCATGGTTCATCTGAGTATGAGCCCTCTTCTGAATCAACGCAAGAACTG
CAAACAATGTCACATTCCTTCCATACCAATTCTTCTCTCTTCATG
Right flanking sequence: Indices 278720 -- 279219
ATTCAAAGACATTCCGAGCTCTTTCCGCGGATCACCACAACCCACCAAACAATACCCCAGTAGGA
CAACCAAACCAACCACACAATACACCACACATTACACCACACAATCAACCACACACTACACAACA
ACACAACCACACAACCATCCACACCACCCAACCACACCACCTATCCCAACACCACCCAAATGCCC
ACCTCTACACGTCCCATCACCACTTACACGCGTTTTTCACGCGTTGAAAATCACCTCCACCAACA
TGCCTCCCCCGATACCCAAGTCGCTCGAGAGCCACCCAGCGCACCAGTTGAGCATCGGGCTGCCC
GAGATGGTGGCGTCGCTCGCCAGACTCCACCCGGTGACGCTTCCCAACCACGGCAGTCTCCAGAC
CGACGCCCTCGTGGCGTTGCGGACGCTGCCCACCTACATCTACGTGGTGCTGTGGTTGTATCAGT
GTCGCGGCTACATCAAGCTCCACAACGAGTACTTTGACGTGGACA
Found at i:278813 original size:12 final size:12
Alignment explanation
Indices: 278796--278863 Score: 70
Period size: 12 Copynumber: 5.8 Consensus size: 12
278786 AACCAAACCA
278796 ACCACACAATAC
1 ACCACACAATAC
*
278808 ACCACACATTAC
1 ACCACACAATAC
278820 ACCACACAAT-C
1 ACCACACAATAC
*
278831 AACCACACACTAC
1 -ACCACACAATAC
*
278844 A-CA-ACAACAC
1 ACCACACAATAC
278854 AACCACACAA
1 -ACCACACAA
278864 CCATCCACAC
Statistics
Matches: 46, Mismatches: 5, Indels: 9
0.77 0.08 0.15
Matches are distributed among these distances:
10 5 0.11
11 4 0.09
12 32 0.70
13 5 0.11
ACGTcount: A:0.50, C:0.43, G:0.00, T:0.07
Consensus pattern (12 bp):
ACCACACAATAC
Left flanking sequence: Indices 278296 -- 278795
CACGGCAACTTACGGCTAACCCCGCCGGGTAATGTGGGACGGGGGTCAAGTGGAACCGATGGAAG
GTTTGGTGTATTGTCTCGGTTTTGTATTTTTTGTGGAATCTTGCCCAATTTGGGGAGAAAGTGGT
TGTAGCAGGGAGGAACGGTGCGGGACGAGTGGCGTGAGACATAGTGCTGGAATGTTTCTAGTGTC
AATTGGGTTTCATAATAATGGAGGTTGGAGGGGTGATAGTTTTCCAGCCAATAGATTACACGCAT
ATGGGTGACTAAGCCATGGTTCATCTGAGTATGAGCCCTCTTCTGAATCAACGCAAGAACTGCAA
ACAATGTCACATTCCTTCCATACCAATTCTTCTCTCTTCATGTACACTCTTACTCTACACTCTTT
CTCTACACTCTTCCTAAACTCTCCTCTACACTCTATTCAAAGACATTCCGAGCTCTTTCCGCGGA
TCACCACAACCCACCAAACAATACCCCAGTAGGACAACCAAACCA
Right flanking sequence: Indices 278864 -- 279363
CCATCCACACCACCCAACCACACCACCTATCCCAACACCACCCAAATGCCCACCTCTACACGTCC
CATCACCACTTACACGCGTTTTTCACGCGTTGAAAATCACCTCCACCAACATGCCTCCCCCGATA
CCCAAGTCGCTCGAGAGCCACCCAGCGCACCAGTTGAGCATCGGGCTGCCCGAGATGGTGGCGTC
GCTCGCCAGACTCCACCCGGTGACGCTTCCCAACCACGGCAGTCTCCAGACCGACGCCCTCGTGG
CGTTGCGGACGCTGCCCACCTACATCTACGTGGTGCTGTGGTTGTATCAGTGTCGCGGCTACATC
AAGCTCCACAACGAGTACTTTGACGTGGACATCTTTGAGCTCGAGTTGTTGGACCATTTTCCCCT
GACCACCTACCTCATGTCGCTGGCAGACTACGATGCCGACGCTCCAAACAACTTGTTCATCACCA
AGTTGAAGCTGGCACTCATCACCTGTTTGCAGCAGCAGAAGTTGT
Found at i:278823 original size:24 final size:25
Alignment explanation
Indices: 278796--278862 Score: 88
Period size: 24 Copynumber: 2.8 Consensus size: 25
278786 AACCAAACCA
*
278796 ACCACACAATAC-ACCACACATTAC
1 ACCACACAATACAACCACACACTAC
278820 ACCACACAAT-CAACCACACACTAC
1 ACCACACAATACAACCACACACTAC
*
278844 A-CA-ACAACACAACCACACA
1 ACCACACAATACAACCACACA
278863 ACCATCCACA
Statistics
Matches: 39, Mismatches: 2, Indels: 5
0.85 0.04 0.11
Matches are distributed among these distances:
22 4 0.10
23 13 0.33
24 22 0.56
ACGTcount: A:0.49, C:0.43, G:0.00, T:0.07
Consensus pattern (25 bp):
ACCACACAATACAACCACACACTAC
Left flanking sequence: Indices 278296 -- 278795
CACGGCAACTTACGGCTAACCCCGCCGGGTAATGTGGGACGGGGGTCAAGTGGAACCGATGGAAG
GTTTGGTGTATTGTCTCGGTTTTGTATTTTTTGTGGAATCTTGCCCAATTTGGGGAGAAAGTGGT
TGTAGCAGGGAGGAACGGTGCGGGACGAGTGGCGTGAGACATAGTGCTGGAATGTTTCTAGTGTC
AATTGGGTTTCATAATAATGGAGGTTGGAGGGGTGATAGTTTTCCAGCCAATAGATTACACGCAT
ATGGGTGACTAAGCCATGGTTCATCTGAGTATGAGCCCTCTTCTGAATCAACGCAAGAACTGCAA
ACAATGTCACATTCCTTCCATACCAATTCTTCTCTCTTCATGTACACTCTTACTCTACACTCTTT
CTCTACACTCTTCCTAAACTCTCCTCTACACTCTATTCAAAGACATTCCGAGCTCTTTCCGCGGA
TCACCACAACCCACCAAACAATACCCCAGTAGGACAACCAAACCA
Right flanking sequence: Indices 278863 -- 279362
ACCATCCACACCACCCAACCACACCACCTATCCCAACACCACCCAAATGCCCACCTCTACACGTC
CCATCACCACTTACACGCGTTTTTCACGCGTTGAAAATCACCTCCACCAACATGCCTCCCCCGAT
ACCCAAGTCGCTCGAGAGCCACCCAGCGCACCAGTTGAGCATCGGGCTGCCCGAGATGGTGGCGT
CGCTCGCCAGACTCCACCCGGTGACGCTTCCCAACCACGGCAGTCTCCAGACCGACGCCCTCGTG
GCGTTGCGGACGCTGCCCACCTACATCTACGTGGTGCTGTGGTTGTATCAGTGTCGCGGCTACAT
CAAGCTCCACAACGAGTACTTTGACGTGGACATCTTTGAGCTCGAGTTGTTGGACCATTTTCCCC
TGACCACCTACCTCATGTCGCTGGCAGACTACGATGCCGACGCTCCAAACAACTTGTTCATCACC
AAGTTGAAGCTGGCACTCATCACCTGTTTGCAGCAGCAGAAGTTG
Found at i:278865 original size:8 final size:8
Alignment explanation
Indices: 278830--278886 Score: 55
Period size: 8 Copynumber: 7.1 Consensus size: 8
278820 ACCACACAAT
278830 CAACCACA
1 CAACCACA
*
278838 C-ACTACA
1 CAACCACA
*
278845 CAACAACA
1 CAACCACA
278853 CAACCACA
1 CAACCACA
278861 CAACCATC-
1 CAACCA-CA
*
278869 CACACCACC
1 CA-ACCACA
278878 CAACCACA
1 CAACCACA
278886 C
1 C
278887 CACCTATCCC
Statistics
Matches: 41, Mismatches: 4, Indels: 8
0.77 0.08 0.15
Matches are distributed among these distances:
7 6 0.15
8 28 0.68
9 7 0.17
ACGTcount: A:0.46, C:0.51, G:0.00, T:0.04
Consensus pattern (8 bp):
CAACCACA
Left flanking sequence: Indices 278330 -- 278829
TGGGACGGGGGTCAAGTGGAACCGATGGAAGGTTTGGTGTATTGTCTCGGTTTTGTATTTTTTGT
GGAATCTTGCCCAATTTGGGGAGAAAGTGGTTGTAGCAGGGAGGAACGGTGCGGGACGAGTGGCG
TGAGACATAGTGCTGGAATGTTTCTAGTGTCAATTGGGTTTCATAATAATGGAGGTTGGAGGGGT
GATAGTTTTCCAGCCAATAGATTACACGCATATGGGTGACTAAGCCATGGTTCATCTGAGTATGA
GCCCTCTTCTGAATCAACGCAAGAACTGCAAACAATGTCACATTCCTTCCATACCAATTCTTCTC
TCTTCATGTACACTCTTACTCTACACTCTTTCTCTACACTCTTCCTAAACTCTCCTCTACACTCT
ATTCAAAGACATTCCGAGCTCTTTCCGCGGATCACCACAACCCACCAAACAATACCCCAGTAGGA
CAACCAAACCAACCACACAATACACCACACATTACACCACACAAT
Right flanking sequence: Indices 278887 -- 279386
CACCTATCCCAACACCACCCAAATGCCCACCTCTACACGTCCCATCACCACTTACACGCGTTTTT
CACGCGTTGAAAATCACCTCCACCAACATGCCTCCCCCGATACCCAAGTCGCTCGAGAGCCACCC
AGCGCACCAGTTGAGCATCGGGCTGCCCGAGATGGTGGCGTCGCTCGCCAGACTCCACCCGGTGA
CGCTTCCCAACCACGGCAGTCTCCAGACCGACGCCCTCGTGGCGTTGCGGACGCTGCCCACCTAC
ATCTACGTGGTGCTGTGGTTGTATCAGTGTCGCGGCTACATCAAGCTCCACAACGAGTACTTTGA
CGTGGACATCTTTGAGCTCGAGTTGTTGGACCATTTTCCCCTGACCACCTACCTCATGTCGCTGG
CAGACTACGATGCCGACGCTCCAAACAACTTGTTCATCACCAAGTTGAAGCTGGCACTCATCACC
TGTTTGCAGCAGCAGAAGTTGTCGCTGTTGGCCAACTTTGAGCGG
Found at i:278881 original size:25 final size:28
Alignment explanation
Indices: 278853--278908 Score: 82
Period size: 25 Copynumber: 2.1 Consensus size: 28
278843 CACAACAACA
278853 CAACCACACAACC-AT-CC-ACACCACC
1 CAACCACACAACCTATCCCAACACCACC
*
278878 CAACCACACCACCTATCCCAACACCACC
1 CAACCACACAACCTATCCCAACACCACC
278906 CAA
1 CAA
278909 ATGCCCACCT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
25 12 0.44
26 2 0.07
27 2 0.07
28 11 0.41
ACGTcount: A:0.39, C:0.55, G:0.00, T:0.05
Consensus pattern (28 bp):
CAACCACACAACCTATCCCAACACCACC
Left flanking sequence: Indices 278353 -- 278852
GATGGAAGGTTTGGTGTATTGTCTCGGTTTTGTATTTTTTGTGGAATCTTGCCCAATTTGGGGAG
AAAGTGGTTGTAGCAGGGAGGAACGGTGCGGGACGAGTGGCGTGAGACATAGTGCTGGAATGTTT
CTAGTGTCAATTGGGTTTCATAATAATGGAGGTTGGAGGGGTGATAGTTTTCCAGCCAATAGATT
ACACGCATATGGGTGACTAAGCCATGGTTCATCTGAGTATGAGCCCTCTTCTGAATCAACGCAAG
AACTGCAAACAATGTCACATTCCTTCCATACCAATTCTTCTCTCTTCATGTACACTCTTACTCTA
CACTCTTTCTCTACACTCTTCCTAAACTCTCCTCTACACTCTATTCAAAGACATTCCGAGCTCTT
TCCGCGGATCACCACAACCCACCAAACAATACCCCAGTAGGACAACCAAACCAACCACACAATAC
ACCACACATTACACCACACAATCAACCACACACTACACAACAACA
Right flanking sequence: Indices 278909 -- 279408
ATGCCCACCTCTACACGTCCCATCACCACTTACACGCGTTTTTCACGCGTTGAAAATCACCTCCA
CCAACATGCCTCCCCCGATACCCAAGTCGCTCGAGAGCCACCCAGCGCACCAGTTGAGCATCGGG
CTGCCCGAGATGGTGGCGTCGCTCGCCAGACTCCACCCGGTGACGCTTCCCAACCACGGCAGTCT
CCAGACCGACGCCCTCGTGGCGTTGCGGACGCTGCCCACCTACATCTACGTGGTGCTGTGGTTGT
ATCAGTGTCGCGGCTACATCAAGCTCCACAACGAGTACTTTGACGTGGACATCTTTGAGCTCGAG
TTGTTGGACCATTTTCCCCTGACCACCTACCTCATGTCGCTGGCAGACTACGATGCCGACGCTCC
AAACAACTTGTTCATCACCAAGTTGAAGCTGGCACTCATCACCTGTTTGCAGCAGCAGAAGTTGT
CGCTGTTGGCCAACTTTGAGCGGGTGGTGCGTCTGTGGTTCGGGG
Found at i:278887 original size:13 final size:13
Alignment explanation
Indices: 278853--278890 Score: 51
Period size: 13 Copynumber: 3.0 Consensus size: 13
278843 CACAACAACA
*
278853 CAACCACA-CAAC
1 CAACCACACCACC
*
278865 CATCCACACCACC
1 CAACCACACCACC
278878 CAACCACACCACC
1 CAACCACACCACC
278891 TATCCCAACA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
12 7 0.32
13 15 0.68
ACGTcount: A:0.39, C:0.58, G:0.00, T:0.03
Consensus pattern (13 bp):
CAACCACACCACC
Left flanking sequence: Indices 278353 -- 278852
GATGGAAGGTTTGGTGTATTGTCTCGGTTTTGTATTTTTTGTGGAATCTTGCCCAATTTGGGGAG
AAAGTGGTTGTAGCAGGGAGGAACGGTGCGGGACGAGTGGCGTGAGACATAGTGCTGGAATGTTT
CTAGTGTCAATTGGGTTTCATAATAATGGAGGTTGGAGGGGTGATAGTTTTCCAGCCAATAGATT
ACACGCATATGGGTGACTAAGCCATGGTTCATCTGAGTATGAGCCCTCTTCTGAATCAACGCAAG
AACTGCAAACAATGTCACATTCCTTCCATACCAATTCTTCTCTCTTCATGTACACTCTTACTCTA
CACTCTTTCTCTACACTCTTCCTAAACTCTCCTCTACACTCTATTCAAAGACATTCCGAGCTCTT
TCCGCGGATCACCACAACCCACCAAACAATACCCCAGTAGGACAACCAAACCAACCACACAATAC
ACCACACATTACACCACACAATCAACCACACACTACACAACAACA
Right flanking sequence: Indices 278891 -- 279390
TATCCCAACACCACCCAAATGCCCACCTCTACACGTCCCATCACCACTTACACGCGTTTTTCACG
CGTTGAAAATCACCTCCACCAACATGCCTCCCCCGATACCCAAGTCGCTCGAGAGCCACCCAGCG
CACCAGTTGAGCATCGGGCTGCCCGAGATGGTGGCGTCGCTCGCCAGACTCCACCCGGTGACGCT
TCCCAACCACGGCAGTCTCCAGACCGACGCCCTCGTGGCGTTGCGGACGCTGCCCACCTACATCT
ACGTGGTGCTGTGGTTGTATCAGTGTCGCGGCTACATCAAGCTCCACAACGAGTACTTTGACGTG
GACATCTTTGAGCTCGAGTTGTTGGACCATTTTCCCCTGACCACCTACCTCATGTCGCTGGCAGA
CTACGATGCCGACGCTCCAAACAACTTGTTCATCACCAAGTTGAAGCTGGCACTCATCACCTGTT
TGCAGCAGCAGAAGTTGTCGCTGTTGGCCAACTTTGAGCGGGTGG
Found at i:281288 original size:14 final size:14
Alignment explanation
Indices: 281266--281314 Score: 71
Period size: 14 Copynumber: 3.5 Consensus size: 14
281256 AGCTACAATA
281266 AGGGTTAGCTTAAG
1 AGGGTTAGCTTAAG
*
281280 AGGGGTAGCTTAAG
1 AGGGTTAGCTTAAG
* *
281294 ATGGTTAGCTAAAG
1 AGGGTTAGCTTAAG
281308 AGGGTTA
1 AGGGTTA
281315 CCTTTCATTT
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
14 30 1.00
ACGTcount: A:0.31, C:0.06, G:0.37, T:0.27
Consensus pattern (14 bp):
AGGGTTAGCTTAAG
Left flanking sequence: Indices 280766 -- 281265
GTGGGTGTTGCGGACGGTGCTAGGGTCTGCCAGGGTAGCGTGGAGAGTGTCCAAGGGTCTGTTTC
GATTATGCAAGTGAAGCCGACACGGAATTCGAAGAGGAACGGCGGAGGAAATGCAGGGTGGTTGG
TTCACGAGAAGGAATTGTGGAGTAGATGATGTCAGGGGTGGGTACATGGAACGGGTTCGCTCAGG
AGGCGACTTGTAGGTGCTCGCCAGTACTTGAGCCCGCGTGTAGACACGTCCACATGCGTTAGTTA
GCATGCCTCATTGGCATTTGGAGTACGTCAATTTTTATCAGGTATCATGTAGAAACGGATGCTGA
TGGTGTCACCGGCAGTGTTCACACGTTTGACGTTGCGGGGCTCATTCGGTCCACCTGCTTTGTAT
TTGGTCGAGTGTTAGTTTGAGAACCAGCCAGCATGCCCACCAGCCAACCAGCCAGCCAGCCAGCT
TACGCAAAGTGCCACCGCAAACTGGTTGAAATAAAAGCTACAATA
Right flanking sequence: Indices 281315 -- 281814
CCTTTCATTTGAGGGAAGTTCGGTAGCTTTTGAAAGGTGTCATGGTAGCTTCCCGCAATCAATTG
TCGTGGAAGTTCCGCCATGCCACGACATACCAACCCTGCAGAACCTCGAATCCCATCGAGCCTCC
ACAATGGACCGTTTTGTAACACATCTTTGTTGGGCTTCGCTAGGTCTACACAAAACAGGGCTTAG
TTCGTATATCTGCATGCGATGCGTTCGGATCCCCACTAGTCAGACTAGCCGCTCTAGACCCAGGG
GTAGTGCCGATCGGGTTGGCTGGGTTATTGTAGGGTGGTTGGTGGCAGTACGTTGGAGGCAGCAA
AGGCGGAACCGATCCAACAATTGAGCAGCAAACGTGAAATCGATCCAACAACTGAGCAGTCAGTT
GCACGCGAGGGACTACTGTGACTGAGCCAGCAGTACCCATTGCAGGGTCCTTTGAGTAACAGCGA
CAAAGCTAACCCAAAGACCCTGTAGACAACACCACGTAACGTTCT
Found at i:281670 original size:31 final size:31
Alignment explanation
Indices: 281633--281698 Score: 87
Period size: 31 Copynumber: 2.1 Consensus size: 31
281623 TACGTTGGAG
* * *
281633 GCAGCAAAGGCGGAACCGATCCAACAATTGA
1 GCAGCAAACGCGAAACCGATCCAACAACTGA
* *
281664 GCAGCAAACGTGAAATCGATCCAACAACTGA
1 GCAGCAAACGCGAAACCGATCCAACAACTGA
281695 GCAG
1 GCAG
281699 TCAGTTGCAC
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.39, C:0.26, G:0.24, T:0.11
Consensus pattern (31 bp):
GCAGCAAACGCGAAACCGATCCAACAACTGA
Left flanking sequence: Indices 281133 -- 281632
CATTCGGTCCACCTGCTTTGTATTTGGTCGAGTGTTAGTTTGAGAACCAGCCAGCATGCCCACCA
GCCAACCAGCCAGCCAGCCAGCTTACGCAAAGTGCCACCGCAAACTGGTTGAAATAAAAGCTACA
ATAAGGGTTAGCTTAAGAGGGGTAGCTTAAGATGGTTAGCTAAAGAGGGTTACCTTTCATTTGAG
GGAAGTTCGGTAGCTTTTGAAAGGTGTCATGGTAGCTTCCCGCAATCAATTGTCGTGGAAGTTCC
GCCATGCCACGACATACCAACCCTGCAGAACCTCGAATCCCATCGAGCCTCCACAATGGACCGTT
TTGTAACACATCTTTGTTGGGCTTCGCTAGGTCTACACAAAACAGGGCTTAGTTCGTATATCTGC
ATGCGATGCGTTCGGATCCCCACTAGTCAGACTAGCCGCTCTAGACCCAGGGGTAGTGCCGATCG
GGTTGGCTGGGTTATTGTAGGGTGGTTGGTGGCAGTACGTTGGAG
Right flanking sequence: Indices 281699 -- 282198
TCAGTTGCACGCGAGGGACTACTGTGACTGAGCCAGCAGTACCCATTGCAGGGTCCTTTGAGTAA
CAGCGACAAAGCTAACCCAAAGACCCTGTAGACAACACCACGTAACGTTCTTTCCAAGGACTACA
CTACCACATCATCACATTACCCCTTACCATAACCACACAAAAATCACCCTTTACCGCATTTCATC
CCTTACCACTGTAACATTGTATTACCACTCCCCGTTTCACCCCCTGTGCACACATTCCCGTTTTT
CCGCCCTCCCCATTGGCTCCATTCCCAACCAGCCACGCCGTTGACGTCTCAGACGCTGTGGCTTA
GCTCGGGCGCACGGTGCGTCCGGTCGCGTCGCATCGTGCTCTTCATCCCCGGCTAATGGATCTGT
CCTGCTGCGCCCACCATCGCTTACGCCCCTGTTGCTTGCACCATGCCTAGCCGGGGGTGCGGCTG
ACTCGTCCACCGCAGTTCCCGCCAGCCAAAAACACAAAAACCACC
Found at i:282733 original size:2 final size:2
Alignment explanation
Indices: 282719--282803 Score: 60
Period size: 2 Copynumber: 45.5 Consensus size: 2
282709 AATAAACCAG
*
282719 AC AC AC A- AC -C AC AC AC AC AC AC AC AC A- AC TAC AA AC A- AC
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC -AC AC AC AC AC
* * *
282758 -C AT AC AC AC AC A- AC TAC AC AC CC AC AC AC CC AC AC AC A- AC
1 AC AC AC AC AC AC AC AC -AC AC AC AC AC AC AC AC AC AC AC AC AC
282798 -C AC AC A
1 AC AC AC A
282804 ACCACCCACG
Statistics
Matches: 65, Mismatches: 8, Indels: 20
0.70 0.09 0.22
Matches are distributed among these distances:
1 8 0.12
2 53 0.82
3 4 0.06
ACGTcount: A:0.49, C:0.47, G:0.00, T:0.04
Consensus pattern (2 bp):
AC
Left flanking sequence: Indices 282219 -- 282718
CCGATCCAACCATCACATCGGAACGTGGGGCGTGGAAGTGCCAATCACACGCAAATCGGGGCCGA
CGAGGATGTGGTGATGCAGCGACGTGAAATTTTCGTCCCAATCGGGAAATAATCATCCTCGAGCG
ATCTCGCCCTACCCAGCGCTAGCGAGCCGGTGGGCGCGCCTACGGGCTAGCCACGCGTGGTACAC
ATTGTCGGGGCCATTGTTGACGCGACGGGCCCGTTTGTCGCCAACGGCCCCTGCGATTGTCTCGA
TGTCCTCATCATGCATGGGCCCACTGCAACCGCATGCGAGCTGCGCGAGCCCCGTAGCATTGGCA
ACGTCGGGGACCGGGGATGGGCCCATGTGAGCCAGCCACGGCTCCTGGGGCGAGGTTGATTGCGC
GATGGAGCTGGTTTGCGGCCCGCGCGCGGCACAGGCACAATGCAACGAAACAGAGCAGTCGAGGT
AGAACACACGATAGGTAGAGACGCCCATCAAACACAATAAACCAG
Right flanking sequence: Indices 282804 -- 283303
ACCACCCACGCAAACTCCACCCTCCACTCACACCACTATCCTCCTCCCTCTGGTTTGCAGCCCGC
GGCCGCCCCTGATCAGACGCGTTTAATTGCCAGCGTTTGCGTAGTGCACACAGCCCGCGGGCGTC
TGCCCAAAACGCTATTGAAATCAAGGTTTTTGTCGCTCATTCCCTCACCCCAGACGGCTGCTACC
ACAATGAACGAGGGCGCACGCACCCACCCGCACCAGGGCGCCGGGTCCCACTACTCGGTGTCGCT
GCTGGTGTACCTGGTGGGGGACGACGAGTTCAACTTCGACGAACAGCCGCTTGCCCGCGACCCGG
TGATGATGGACAACATCGAGGAGGAGGAGGAGGTGGTGGAGGAGGAGGCTCCGAAGGTGGACGCC
TACGCCACCACGATGGCTCGGGCTGCTGCCAACGGCGACCTCCCGCCGGCTGACCCGCACCCGCA
GGACACCATTCCCCCCACCGCTCCCCAGACGCTCGCCCATGCCCA
Found at i:282734 original size:10 final size:10
Alignment explanation
Indices: 282719--282803 Score: 77
Period size: 10 Copynumber: 8.5 Consensus size: 10
282709 AATAAACCAG
282719 ACACACAACC
1 ACACACAACC
282729 ACACAC-ACAC
1 ACACACAAC-C
*
282739 ACACACAACT
1 ACACACAACC
*
282749 ACAAACAACC
1 ACACACAACC
* *
282759 ATACACACACA
1 ACACACA-ACC
282770 ACTACAC-ACC
1 AC-ACACAACC
*
282780 -CACACACCC
1 ACACACAACC
282789 ACACACAACC
1 ACACACAACC
282799 ACACA
1 ACACA
282804 ACCACCCACG
Statistics
Matches: 59, Mismatches: 10, Indels: 12
0.73 0.12 0.15
Matches are distributed among these distances:
8 4 0.07
9 5 0.08
10 41 0.69
11 5 0.08
12 4 0.07
ACGTcount: A:0.49, C:0.47, G:0.00, T:0.04
Consensus pattern (10 bp):
ACACACAACC
Left flanking sequence: Indices 282219 -- 282718
CCGATCCAACCATCACATCGGAACGTGGGGCGTGGAAGTGCCAATCACACGCAAATCGGGGCCGA
CGAGGATGTGGTGATGCAGCGACGTGAAATTTTCGTCCCAATCGGGAAATAATCATCCTCGAGCG
ATCTCGCCCTACCCAGCGCTAGCGAGCCGGTGGGCGCGCCTACGGGCTAGCCACGCGTGGTACAC
ATTGTCGGGGCCATTGTTGACGCGACGGGCCCGTTTGTCGCCAACGGCCCCTGCGATTGTCTCGA
TGTCCTCATCATGCATGGGCCCACTGCAACCGCATGCGAGCTGCGCGAGCCCCGTAGCATTGGCA
ACGTCGGGGACCGGGGATGGGCCCATGTGAGCCAGCCACGGCTCCTGGGGCGAGGTTGATTGCGC
GATGGAGCTGGTTTGCGGCCCGCGCGCGGCACAGGCACAATGCAACGAAACAGAGCAGTCGAGGT
AGAACACACGATAGGTAGAGACGCCCATCAAACACAATAAACCAG
Right flanking sequence: Indices 282804 -- 283303
ACCACCCACGCAAACTCCACCCTCCACTCACACCACTATCCTCCTCCCTCTGGTTTGCAGCCCGC
GGCCGCCCCTGATCAGACGCGTTTAATTGCCAGCGTTTGCGTAGTGCACACAGCCCGCGGGCGTC
TGCCCAAAACGCTATTGAAATCAAGGTTTTTGTCGCTCATTCCCTCACCCCAGACGGCTGCTACC
ACAATGAACGAGGGCGCACGCACCCACCCGCACCAGGGCGCCGGGTCCCACTACTCGGTGTCGCT
GCTGGTGTACCTGGTGGGGGACGACGAGTTCAACTTCGACGAACAGCCGCTTGCCCGCGACCCGG
TGATGATGGACAACATCGAGGAGGAGGAGGAGGTGGTGGAGGAGGAGGCTCCGAAGGTGGACGCC
TACGCCACCACGATGGCTCGGGCTGCTGCCAACGGCGACCTCCCGCCGGCTGACCCGCACCCGCA
GGACACCATTCCCCCCACCGCTCCCCAGACGCTCGCCCATGCCCA
Found at i:283382 original size:30 final size:30
Alignment explanation
Indices: 283348--283435 Score: 131
Period size: 30 Copynumber: 2.9 Consensus size: 30
283338 CTGGTCCAGT
* *
283348 CCGGGCACCCAACCCAAAACCAGGCTCAGC
1 CCGGGCACCCAACCCAAAACCAGGCCCAAC
283378 CCGGGCACCCAACCCAAAACCAGGCCCAAC
1 CCGGGCACCCAACCCAAAACCAGGCCCAAC
* * *
283408 CCGGACAACCAACGCAAAACCAGGCCCA
1 CCGGGCACCCAACCCAAAACCAGGCCCA
283436 GTTAACCCAA
Statistics
Matches: 53, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 53 1.00
ACGTcount: A:0.34, C:0.47, G:0.18, T:0.01
Consensus pattern (30 bp):
CCGGGCACCCAACCCAAAACCAGGCCCAAC
Left flanking sequence: Indices 282848 -- 283347
TCCCTCTGGTTTGCAGCCCGCGGCCGCCCCTGATCAGACGCGTTTAATTGCCAGCGTTTGCGTAG
TGCACACAGCCCGCGGGCGTCTGCCCAAAACGCTATTGAAATCAAGGTTTTTGTCGCTCATTCCC
TCACCCCAGACGGCTGCTACCACAATGAACGAGGGCGCACGCACCCACCCGCACCAGGGCGCCGG
GTCCCACTACTCGGTGTCGCTGCTGGTGTACCTGGTGGGGGACGACGAGTTCAACTTCGACGAAC
AGCCGCTTGCCCGCGACCCGGTGATGATGGACAACATCGAGGAGGAGGAGGAGGTGGTGGAGGAG
GAGGCTCCGAAGGTGGACGCCTACGCCACCACGATGGCTCGGGCTGCTGCCAACGGCGACCTCCC
GCCGGCTGACCCGCACCCGCAGGACACCATTCCCCCCACCGCTCCCCAGACGCTCGCCCATGCCC
AGTACCAGGCCCAGCCCGGGCAGGCGATGCTCAACCTGGTCCAGT
Right flanking sequence: Indices 283436 -- 283935
GTTAACCCAAAATCTGGCCCAACCTGGACAGTCCACGCAAAACATGGCCCCCTCCGAGCTCAATT
CAAAGTTCCAGCGGCTCCTGATGACCCTCCAGCAGCTGAAAACCAACAACCGCTCGCAGGCATTC
ATGCTGAACTTCCAGCTGAACGTGGACAAGGCCGCGGCCGAGTACGACGGCGAACGCGACAAGCG
TGCGCTGTACTACCTGCGGATCCACCGCCCGCCGCTGGACGAGGCCCTGCTGGTGCTGCTGGCGG
AACTGGCCCCCCAGCCCGCCAGCCAGCCCCAGCCTCCGCTGCCCACGACGCCGCTGCCCGAGGTG
CCGGTGCGCCAGGACCTCGTGGCCAAGTACGAGCAGTTGCAGACCACCGACGCCCAGGTGCTGGC
CCGCGACGCCAACGACTTGTACATTGGCGGTGCTGCTGGGCTGGCACTCACGCCGCAGGCGGCCC
GGCCCGACGACGATTTGCTGGACCTGGGCCTGCTGTTTGGCGACG
Found at i:293609 original size:16 final size:16
Alignment explanation
Indices: 293577--293618 Score: 66
Period size: 16 Copynumber: 2.6 Consensus size: 16
293567 CGCCTATCCC
293577 CTACCATCCCCTCTCTT
1 CTACCA-CCCCTCTCTT
*
293594 CTACCACCCTTCTCTT
1 CTACCACCCCTCTCTT
293610 CTACCACCC
1 CTACCACCC
293619 ATTTCACTAC
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
16 18 0.75
17 6 0.25
ACGTcount: A:0.14, C:0.55, G:0.00, T:0.31
Consensus pattern (16 bp):
CTACCACCCCTCTCTT
Left flanking sequence: Indices 293077 -- 293576
GGCCTGGAACTGGTTCACTAGCTGGTGGGTTCGGGTAAACGACATGGAGATGGGGGTGTATGGGG
TAGGAGCGGTTTGTGCGGGAAAAGTGAAGGTTCAGGGGTGTTGTGGTGGTCTTCAGGTGGTTCTT
AGTAGTTTCTGATAAGCTTCTGGTGGGGTGTGTGGTTGTGGATGGCCTTCTGGCGGTGCCGGCCT
TGCGAGTGAGATTTGTTGCGTTGGATGCATAGTGCGATAGAGGTGGTGGCGGGTGGGGATAGGGT
GTCGCGTGGGGGTTAGACGGGCTTGAGAAAGGTGCTTGGGGGCTAGGAGGGTATGCCTTTTGAAT
TGTTGACCCAATGTGTTGCGGTTACATCTTTAGTTGAAGTATCTATCTGTGTAGTAACTATGCAG
TGTGAGTTTGTAGACAACCAAAACTAGGAACGGTGCCAAAAAAAGACTACAGTACCTACACTTAC
TGAGGGTTTGAACCAACTCTCTAAAAAATTCAACTCGCCTATCCC
Right flanking sequence: Indices 293619 -- 294118
ATTTCACTACCACCTCTGTTCCAAACCGCACGAGACCACCAAGCAAAACCTAGAACCACACCACA
AACACCCACACGTAGAAAAACGACCATCTACACCTGTACCCTTCTAGCACCATCCACCCACACAC
ACCCTTCCCTTTCCACCTCCTCATTCCCGGACTCCTGCCTACACTCCTGCTGCATAGTGGCGAAA
ATCAACGCGCTTACCCAGTTCCTGTGCAATTGGCCTTCCAACCCATAAACCATGTCACGCCGATA
CGACTCGCGAACCACCATCTTCTCCCCCGAGGGCCGTCTCTACCAGGTGGAGTACGCGCAAGAGG
CCATTTCCAACGCCGGAACCGCGCTTGGGATCCTCCTGAAGGAGGGTGTGGTTCTTGCTTGTGAA
AAGAAGGTGACACTGAAGCTTTTGGACAACGACGGGCTGGCGGAGAAATTGTACGTTGTCGACGA
CCACATGGTGGTGGCCGTTGCCGGGATGACCGCTGACGCCACCAT
Found at i:294763 original size:10 final size:10
Alignment explanation
Indices: 294736--294784 Score: 80
Period size: 10 Copynumber: 4.8 Consensus size: 10
294726 TAGTGCGGAC
294736 GTGGTGGTTAA
1 GTGGTGG-TAA
*
294747 TTGGTGGTAA
1 GTGGTGGTAA
294757 GTGGTGGTAA
1 GTGGTGGTAA
294767 GTGGTGGTAA
1 GTGGTGGTAA
294777 GTGGTGGT
1 GTGGTGGT
294785 GAAGAAGTCG
Statistics
Matches: 36, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
10 30 0.83
11 6 0.17
ACGTcount: A:0.16, C:0.00, G:0.49, T:0.35
Consensus pattern (10 bp):
GTGGTGGTAA
Left flanking sequence: Indices 294236 -- 294735
CGGTGGGTTGCGTCCGTTCGGTGTGTCTTTCCTCTACGCCGGCTACGACGACCGCTACGAGTTCC
AGTTGTACCTGCTGAACCCGTCGGGCAACTTTTCTGGGTGGCGTGCCACTTCGATCGGGGCCAAC
AACCTGGCTGCGCAGACGCTTTTGAAGAAGGACTACTCTGACGACATCGGTTTGAAGGACGCGTG
CTTGTTAGCAGTCAAGGTGCTTCTGAAAACCATGGACCTGCTGAACTTGAACTCGGACAAGGTGG
AGTTTGCCACGTTGCTGATGGGCAAGGACGGCAAGCCCTTGCATAAGTTGTGGCTGGCCAAGGAC
ATCGACGCCCTTATTAAGGACCTGGGGGTGTTGGACGAGAAGGACAGCGAGGAGTAATGAATACA
TGATATGATAGAGAATGCGGTGTGGGCGGTAGTTTGTAATTTTGACAGAAGAGTAATTCTTGAGT
GGTGGCGTAAGTAATTGTTAAGCAGTGTGGTGAAGTAGTGCGGAC
Right flanking sequence: Indices 294785 -- 295284
GAAGAAGTCGATGGTATGAGCCCTGATGCGAGTGGCGTCTGCTTACCAAATGTGAGACATCCCAC
CCAGCCGTTGAAGCTGTAATTACGTGCAGGGTCCCGGCTTAGGTGTAATTGTCGGGAATAGCTGG
TGTGGGTGGCTAGAGTCGGTCGAGGGCTAGTGTACATTCACTCGTTTTAAGTATAGTGATTATGA
AAAGTTGAATGCAGAGTACGTGAGTTGGAAGAAATACACAAATAACTACGTGTTACGTGTTTAGA
GACACATGACTACCAAAAACCTAGTAGTTTTGCTACCCATTTCTCTTCTTATGCAAACCCATTTC
TCCCAAAGCCGCGCCATCGCGGCGCTCGTAAATATGCAACCGGCTCAGGTCCCGACACAACCCGC
AAACTGCACCACGCAACGTGTAATTCACACCCACTTTAATCCAGCTCCCTCGGGCCCTTCCTCCA
ACTCTACGCCCCTATTTCTTTTCGTTCCACCTTCTCCCTTCTCTC
Found at i:295550 original size:12 final size:12
Alignment explanation
Indices: 295533--295570 Score: 58
Period size: 12 Copynumber: 3.2 Consensus size: 12
295523 CTCGGGGGGT
* *
295533 GACCGCGACCGG
1 GACCGCGACAGA
295545 GACCGCGACAGA
1 GACCGCGACAGA
295557 GACCGCGACAGA
1 GACCGCGACAGA
295569 GA
1 GA
295571 ACGTGACCGA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
12 24 1.00
ACGTcount: A:0.29, C:0.34, G:0.37, T:0.00
Consensus pattern (12 bp):
GACCGCGACAGA
Left flanking sequence: Indices 295033 -- 295532
TACGTGTTTAGAGACACATGACTACCAAAAACCTAGTAGTTTTGCTACCCATTTCTCTTCTTATG
CAAACCCATTTCTCCCAAAGCCGCGCCATCGCGGCGCTCGTAAATATGCAACCGGCTCAGGTCCC
GACACAACCCGCAAACTGCACCACGCAACGTGTAATTCACACCCACTTTAATCCAGCTCCCTCGG
GCCCTTCCTCCAACTCTACGCCCCTATTTCTTTTCGTTCCACCTTCTCCCTTCTCTCCCCTTTCT
CTCCTCCACTCCCTGTGTACAACCGCACAGAAAAAATTATAAAAAACAAGACCGTTACACCCAGA
ACCTCCCCACGCTAACAGGCCCACACACGCGCAACCCACGCGAAACCACGCATTAATCCAACCCC
ATACCCACTGAAAGACCCACTGGACACACCGCCAGCTCTTTCCCACCCATTTCCAGCCCGCCATG
TCGTATAACCGCGGCAGTTCCTACTACGGGCGCTACTCGGGGGGT
Right flanking sequence: Indices 295571 -- 296070
ACGTGACCGAGGAGAGAAGAAGTACGAGGGCAGCTCTGGCAGCAGCCCTGCCGACCGCGACCGCG
ACCGCGACCGAGACCGAGGTTCATACCGCCGTGACTACTACGGAGGCTACCGAGGCTCTGGCAGC
GCAGGCAGCGCTGGTCTGAGCAGCAGCAACCCGTCGCTGAAGTACTACAAGTACGACCGAGACCG
AGAGCCGCGCGAACGCGACCGCGATCGCGACTCGGGCTCGTTTTACCGGGGAAAGTACGATAGCT
ACCCTGGCAAGCACCATCTGCGGTACGACCTGCGCTACGACAAGTACGAGCGGTACTCTGGCAGC
TCTGGGGGCCGCGAAACCAACACAGACTCGTACAAACCGCGCAAATCCAAGGACCGCGACGGCAA
GCCCAAGGAGCGCGAGGGGAAGCCCAAGGAGGGCCGCAGCGACTACGACCGGCGTTCCTCGGGCT
ATGGTGACGACCGCCGACTGCTGGATCCACCGCGCAGACCACAAG
Found at i:295653 original size:6 final size:6
Alignment explanation
Indices: 295622--295651 Score: 51
Period size: 6 Copynumber: 5.0 Consensus size: 6
295612 GCAGCCCTGC
*
295622 CGACCG CGACCG CGACCG CGACCG AGACCG
1 CGACCG CGACCG CGACCG CGACCG CGACCG
295652 AGGTTCATAC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.20, C:0.47, G:0.33, T:0.00
Consensus pattern (6 bp):
CGACCG
Left flanking sequence: Indices 295122 -- 295621
GCCATCGCGGCGCTCGTAAATATGCAACCGGCTCAGGTCCCGACACAACCCGCAAACTGCACCAC
GCAACGTGTAATTCACACCCACTTTAATCCAGCTCCCTCGGGCCCTTCCTCCAACTCTACGCCCC
TATTTCTTTTCGTTCCACCTTCTCCCTTCTCTCCCCTTTCTCTCCTCCACTCCCTGTGTACAACC
GCACAGAAAAAATTATAAAAAACAAGACCGTTACACCCAGAACCTCCCCACGCTAACAGGCCCAC
ACACGCGCAACCCACGCGAAACCACGCATTAATCCAACCCCATACCCACTGAAAGACCCACTGGA
CACACCGCCAGCTCTTTCCCACCCATTTCCAGCCCGCCATGTCGTATAACCGCGGCAGTTCCTAC
TACGGGCGCTACTCGGGGGGTGACCGCGACCGGGACCGCGACAGAGACCGCGACAGAGAACGTGA
CCGAGGAGAGAAGAAGTACGAGGGCAGCTCTGGCAGCAGCCCTGC
Right flanking sequence: Indices 295652 -- 296151
AGGTTCATACCGCCGTGACTACTACGGAGGCTACCGAGGCTCTGGCAGCGCAGGCAGCGCTGGTC
TGAGCAGCAGCAACCCGTCGCTGAAGTACTACAAGTACGACCGAGACCGAGAGCCGCGCGAACGC
GACCGCGATCGCGACTCGGGCTCGTTTTACCGGGGAAAGTACGATAGCTACCCTGGCAAGCACCA
TCTGCGGTACGACCTGCGCTACGACAAGTACGAGCGGTACTCTGGCAGCTCTGGGGGCCGCGAAA
CCAACACAGACTCGTACAAACCGCGCAAATCCAAGGACCGCGACGGCAAGCCCAAGGAGCGCGAG
GGGAAGCCCAAGGAGGGCCGCAGCGACTACGACCGGCGTTCCTCGGGCTATGGTGACGACCGCCG
ACTGCTGGATCCACCGCGCAGACCACAAGCCTCACTGGGAGAGCGCCGACCGTCCTATGAGGGCC
GTCGCCGCGGCAGCGGAAACAGCATCAAGGAGGAGCACGACGACG
Found at i:295991 original size:21 final size:21
Alignment explanation
Indices: 295942--295991 Score: 73
Period size: 21 Copynumber: 2.4 Consensus size: 21
295932 CCGCGCAAAT
*
295942 CCAAGGACCGCGACGGCAAGC
1 CCAAGGAGCGCGACGGCAAGC
* *
295963 CCAAGGAGCGCGAGGGGAAGC
1 CCAAGGAGCGCGACGGCAAGC
295984 CCAAGGAG
1 CCAAGGAG
295992 GGCCGCAGCG
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.30, C:0.30, G:0.40, T:0.00
Consensus pattern (21 bp):
CCAAGGAGCGCGACGGCAAGC
Left flanking sequence: Indices 295442 -- 295941
CTGGACACACCGCCAGCTCTTTCCCACCCATTTCCAGCCCGCCATGTCGTATAACCGCGGCAGTT
CCTACTACGGGCGCTACTCGGGGGGTGACCGCGACCGGGACCGCGACAGAGACCGCGACAGAGAA
CGTGACCGAGGAGAGAAGAAGTACGAGGGCAGCTCTGGCAGCAGCCCTGCCGACCGCGACCGCGA
CCGCGACCGAGACCGAGGTTCATACCGCCGTGACTACTACGGAGGCTACCGAGGCTCTGGCAGCG
CAGGCAGCGCTGGTCTGAGCAGCAGCAACCCGTCGCTGAAGTACTACAAGTACGACCGAGACCGA
GAGCCGCGCGAACGCGACCGCGATCGCGACTCGGGCTCGTTTTACCGGGGAAAGTACGATAGCTA
CCCTGGCAAGCACCATCTGCGGTACGACCTGCGCTACGACAAGTACGAGCGGTACTCTGGCAGCT
CTGGGGGCCGCGAAACCAACACAGACTCGTACAAACCGCGCAAAT
Right flanking sequence: Indices 295992 -- 296491
GGCCGCAGCGACTACGACCGGCGTTCCTCGGGCTATGGTGACGACCGCCGACTGCTGGATCCACC
GCGCAGACCACAAGCCTCACTGGGAGAGCGCCGACCGTCCTATGAGGGCCGTCGCCGCGGCAGCG
GAAACAGCATCAAGGAGGAGCACGACGACGAGCGCCGGCGCAGCACGGACGAGGTGCCCAAGGGC
CCGCTGGGAGCGAAGTCCAAGGAGCGCCCGAAGGAGAAACGAGACGGGCGTGAGGGTCGCGATGG
TCGCGATGGTCGAGATGGTCGTGATGGTCGAGATGGTCGAGATGGTCGTGAAGCTCGCGAAAACC
GTGATAAGAGGAAGGAGAAGGGACGGCCAGATAGACTGGATAGACCGGAAAGGCTGGATAGACCG
GAAAGACTGGATAGACCGGAGCGTCTGGACCTGAAACCTGAGCCGAGAGATCCCCCCAGAGAGCC
CGGTTCTCGTGAAATCCTGAGGGTTCCGTCACGAGAGGTGCCGAA
Found at i:296255 original size:9 final size:9
Alignment explanation
Indices: 296241--296299 Score: 91
Period size: 9 Copynumber: 6.6 Consensus size: 9
296231 CGGGCGTGAG
*
296241 GGTCGCGAT
1 GGTCGAGAT
*
296250 GGTCGCGAT
1 GGTCGAGAT
296259 GGTCGAGAT
1 GGTCGAGAT
*
296268 GGTCGTGAT
1 GGTCGAGAT
296277 GGTCGAGAT
1 GGTCGAGAT
296286 GGTCGAGAT
1 GGTCGAGAT
296295 GGTCG
1 GGTCG
296300 TGAAGCTCGC
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
9 47 1.00
ACGTcount: A:0.15, C:0.15, G:0.46, T:0.24
Consensus pattern (9 bp):
GGTCGAGAT
Left flanking sequence: Indices 295741 -- 296240
AGTACTACAAGTACGACCGAGACCGAGAGCCGCGCGAACGCGACCGCGATCGCGACTCGGGCTCG
TTTTACCGGGGAAAGTACGATAGCTACCCTGGCAAGCACCATCTGCGGTACGACCTGCGCTACGA
CAAGTACGAGCGGTACTCTGGCAGCTCTGGGGGCCGCGAAACCAACACAGACTCGTACAAACCGC
GCAAATCCAAGGACCGCGACGGCAAGCCCAAGGAGCGCGAGGGGAAGCCCAAGGAGGGCCGCAGC
GACTACGACCGGCGTTCCTCGGGCTATGGTGACGACCGCCGACTGCTGGATCCACCGCGCAGACC
ACAAGCCTCACTGGGAGAGCGCCGACCGTCCTATGAGGGCCGTCGCCGCGGCAGCGGAAACAGCA
TCAAGGAGGAGCACGACGACGAGCGCCGGCGCAGCACGGACGAGGTGCCCAAGGGCCCGCTGGGA
GCGAAGTCCAAGGAGCGCCCGAAGGAGAAACGAGACGGGCGTGAG
Right flanking sequence: Indices 296300 -- 296799
TGAAGCTCGCGAAAACCGTGATAAGAGGAAGGAGAAGGGACGGCCAGATAGACTGGATAGACCGG
AAAGGCTGGATAGACCGGAAAGACTGGATAGACCGGAGCGTCTGGACCTGAAACCTGAGCCGAGA
GATCCCCCCAGAGAGCCCGGTTCTCGTGAAATCCTGAGGGTTCCGTCACGAGAGGTGCCGAAGGA
GGTGAAGGACGAGAAGAAGGAGTCGAAGGAGCCAGCGGAGCCCGTCAAGGAGTCGAAGGAGCCTA
CCAAACCTCTGGAACCCAAGGAGCTGCTACGAAAAACGGAGGACCCGAAAGATGCTAAGGATTTG
AAGGATCCGAAGGCTCCTGTATCAACCGAGTCTGCTAAGTCGAAGCCCTTGGAAGCTACCAAATC
TGACGTTCTCGACTCGGCTGGCGTTGAGACAACCAAGCCTACTGAGCCTACTAAACCGGAGTCCG
CTAAGCTGCTACCGAAGCCCTCCGACGCTGCGCTGGAACAGCCTG
Found at i:296279 original size:27 final size:27
Alignment explanation
Indices: 296241--296311 Score: 106
Period size: 27 Copynumber: 2.6 Consensus size: 27
296231 CGGGCGTGAG
*
296241 GGTCGCGATGGTCGCGATGGTCGAGAT
1 GGTCGTGATGGTCGCGATGGTCGAGAT
*
296268 GGTCGTGATGGTCGAGATGGTCGAGAT
1 GGTCGTGATGGTCGCGATGGTCGAGAT
* *
296295 GGTCGTGAAGCTCGCGA
1 GGTCGTGATGGTCGCGA
296312 AAACCGTGAT
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 39 1.00
ACGTcount: A:0.17, C:0.17, G:0.44, T:0.23
Consensus pattern (27 bp):
GGTCGTGATGGTCGCGATGGTCGAGAT
Left flanking sequence: Indices 295741 -- 296240
AGTACTACAAGTACGACCGAGACCGAGAGCCGCGCGAACGCGACCGCGATCGCGACTCGGGCTCG
TTTTACCGGGGAAAGTACGATAGCTACCCTGGCAAGCACCATCTGCGGTACGACCTGCGCTACGA
CAAGTACGAGCGGTACTCTGGCAGCTCTGGGGGCCGCGAAACCAACACAGACTCGTACAAACCGC
GCAAATCCAAGGACCGCGACGGCAAGCCCAAGGAGCGCGAGGGGAAGCCCAAGGAGGGCCGCAGC
GACTACGACCGGCGTTCCTCGGGCTATGGTGACGACCGCCGACTGCTGGATCCACCGCGCAGACC
ACAAGCCTCACTGGGAGAGCGCCGACCGTCCTATGAGGGCCGTCGCCGCGGCAGCGGAAACAGCA
TCAAGGAGGAGCACGACGACGAGCGCCGGCGCAGCACGGACGAGGTGCCCAAGGGCCCGCTGGGA
GCGAAGTCCAAGGAGCGCCCGAAGGAGAAACGAGACGGGCGTGAG
Right flanking sequence: Indices 296312 -- 296811
AAACCGTGATAAGAGGAAGGAGAAGGGACGGCCAGATAGACTGGATAGACCGGAAAGGCTGGATA
GACCGGAAAGACTGGATAGACCGGAGCGTCTGGACCTGAAACCTGAGCCGAGAGATCCCCCCAGA
GAGCCCGGTTCTCGTGAAATCCTGAGGGTTCCGTCACGAGAGGTGCCGAAGGAGGTGAAGGACGA
GAAGAAGGAGTCGAAGGAGCCAGCGGAGCCCGTCAAGGAGTCGAAGGAGCCTACCAAACCTCTGG
AACCCAAGGAGCTGCTACGAAAAACGGAGGACCCGAAAGATGCTAAGGATTTGAAGGATCCGAAG
GCTCCTGTATCAACCGAGTCTGCTAAGTCGAAGCCCTTGGAAGCTACCAAATCTGACGTTCTCGA
CTCGGCTGGCGTTGAGACAACCAAGCCTACTGAGCCTACTAAACCGGAGTCCGCTAAGCTGCTAC
CGAAGCCCTCCGACGCTGCGCTGGAACAGCCTGTGAAACAGTCCA
Found at i:296360 original size:9 final size:9
Alignment explanation
Indices: 296346--296397 Score: 59
Period size: 9 Copynumber: 5.8 Consensus size: 9
296336 GGGACGGCCA
296346 GATAGACTG
1 GATAGACTG
*
296355 GATAGACCG
1 GATAGACTG
* *
296364 GAAAGGCTG
1 GATAGACTG
*
296373 GATAGACCG
1 GATAGACTG
*
296382 GAAAGACTG
1 GATAGACTG
296391 GATAGAC
1 GATAGAC
296398 CGGAGCGTCT
Statistics
Matches: 33, Mismatches: 10, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
9 33 1.00
ACGTcount: A:0.37, C:0.15, G:0.35, T:0.13
Consensus pattern (9 bp):
GATAGACTG
Left flanking sequence: Indices 295846 -- 296345
ATCTGCGGTACGACCTGCGCTACGACAAGTACGAGCGGTACTCTGGCAGCTCTGGGGGCCGCGAA
ACCAACACAGACTCGTACAAACCGCGCAAATCCAAGGACCGCGACGGCAAGCCCAAGGAGCGCGA
GGGGAAGCCCAAGGAGGGCCGCAGCGACTACGACCGGCGTTCCTCGGGCTATGGTGACGACCGCC
GACTGCTGGATCCACCGCGCAGACCACAAGCCTCACTGGGAGAGCGCCGACCGTCCTATGAGGGC
CGTCGCCGCGGCAGCGGAAACAGCATCAAGGAGGAGCACGACGACGAGCGCCGGCGCAGCACGGA
CGAGGTGCCCAAGGGCCCGCTGGGAGCGAAGTCCAAGGAGCGCCCGAAGGAGAAACGAGACGGGC
GTGAGGGTCGCGATGGTCGCGATGGTCGAGATGGTCGTGATGGTCGAGATGGTCGAGATGGTCGT
GAAGCTCGCGAAAACCGTGATAAGAGGAAGGAGAAGGGACGGCCA
Right flanking sequence: Indices 296398 -- 296897
CGGAGCGTCTGGACCTGAAACCTGAGCCGAGAGATCCCCCCAGAGAGCCCGGTTCTCGTGAAATC
CTGAGGGTTCCGTCACGAGAGGTGCCGAAGGAGGTGAAGGACGAGAAGAAGGAGTCGAAGGAGCC
AGCGGAGCCCGTCAAGGAGTCGAAGGAGCCTACCAAACCTCTGGAACCCAAGGAGCTGCTACGAA
AAACGGAGGACCCGAAAGATGCTAAGGATTTGAAGGATCCGAAGGCTCCTGTATCAACCGAGTCT
GCTAAGTCGAAGCCCTTGGAAGCTACCAAATCTGACGTTCTCGACTCGGCTGGCGTTGAGACAAC
CAAGCCTACTGAGCCTACTAAACCGGAGTCCGCTAAGCTGCTACCGAAGCCCTCCGACGCTGCGC
TGGAACAGCCTGTGAAACAGTCCACTGAGGACGCAAAGCCAGCCAAGGAAGATGAACCGAGGCCG
CTGGTTGAATTGAAGGCCGCTGCTGAGGAGGCTACCAAGGCGAAG
Found at i:296410 original size:18 final size:18
Alignment explanation
Indices: 296349--296401 Score: 97
Period size: 18 Copynumber: 2.9 Consensus size: 18
296339 ACGGCCAGAT
296349 AGACTGGATAGACCGGAA
1 AGACTGGATAGACCGGAA
*
296367 AGGCTGGATAGACCGGAA
1 AGACTGGATAGACCGGAA
296385 AGACTGGATAGACCGGA
1 AGACTGGATAGACCGGA
296402 GCGTCTGGAC
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 33 1.00
ACGTcount: A:0.36, C:0.17, G:0.36, T:0.11
Consensus pattern (18 bp):
AGACTGGATAGACCGGAA
Left flanking sequence: Indices 295849 -- 296348
TGCGGTACGACCTGCGCTACGACAAGTACGAGCGGTACTCTGGCAGCTCTGGGGGCCGCGAAACC
AACACAGACTCGTACAAACCGCGCAAATCCAAGGACCGCGACGGCAAGCCCAAGGAGCGCGAGGG
GAAGCCCAAGGAGGGCCGCAGCGACTACGACCGGCGTTCCTCGGGCTATGGTGACGACCGCCGAC
TGCTGGATCCACCGCGCAGACCACAAGCCTCACTGGGAGAGCGCCGACCGTCCTATGAGGGCCGT
CGCCGCGGCAGCGGAAACAGCATCAAGGAGGAGCACGACGACGAGCGCCGGCGCAGCACGGACGA
GGTGCCCAAGGGCCCGCTGGGAGCGAAGTCCAAGGAGCGCCCGAAGGAGAAACGAGACGGGCGTG
AGGGTCGCGATGGTCGCGATGGTCGAGATGGTCGTGATGGTCGAGATGGTCGAGATGGTCGTGAA
GCTCGCGAAAACCGTGATAAGAGGAAGGAGAAGGGACGGCCAGAT
Right flanking sequence: Indices 296402 -- 296901
GCGTCTGGACCTGAAACCTGAGCCGAGAGATCCCCCCAGAGAGCCCGGTTCTCGTGAAATCCTGA
GGGTTCCGTCACGAGAGGTGCCGAAGGAGGTGAAGGACGAGAAGAAGGAGTCGAAGGAGCCAGCG
GAGCCCGTCAAGGAGTCGAAGGAGCCTACCAAACCTCTGGAACCCAAGGAGCTGCTACGAAAAAC
GGAGGACCCGAAAGATGCTAAGGATTTGAAGGATCCGAAGGCTCCTGTATCAACCGAGTCTGCTA
AGTCGAAGCCCTTGGAAGCTACCAAATCTGACGTTCTCGACTCGGCTGGCGTTGAGACAACCAAG
CCTACTGAGCCTACTAAACCGGAGTCCGCTAAGCTGCTACCGAAGCCCTCCGACGCTGCGCTGGA
ACAGCCTGTGAAACAGTCCACTGAGGACGCAAAGCCAGCCAAGGAAGATGAACCGAGGCCGCTGG
TTGAATTGAAGGCCGCTGCTGAGGAGGCTACCAAGGCGAAGGAGG
Found at i:296901 original size:18 final size:18
Alignment explanation
Indices: 296878--297001 Score: 92
Period size: 18 Copynumber: 7.1 Consensus size: 18
296868 GCCGCTGCTG
*
296878 AGGAGGCTACCAAGGCGA
1 AGGAGGCTACCGAGGCGA
* *
296896 AGGAGGCT---GAGACAA
1 AGGAGGCTACCGAGGCGA
* * **
296911 AGGAGGCCACCAAGGTAA
1 AGGAGGCTACCGAGGCGA
*
296929 AGGAGGCTACCGACGCGA
1 AGGAGGCTACCGAGGCGA
* *
296947 AGGAGACTACCGAGGCGG
1 AGGAGGCTACCGAGGCGA
* * *
296965 AGAAGACTACCGAGGTGA
1 AGGAGGCTACCGAGGCGA
* *
296983 AGGCGTCTACCGAGGCGA
1 AGGAGGCTACCGAGGCGA
297001 A
1 A
297002 AAAGGACGCT
Statistics
Matches: 81, Mismatches: 22, Indels: 6
0.74 0.20 0.06
Matches are distributed among these distances:
15 11 0.14
18 70 0.86
ACGTcount: A:0.33, C:0.22, G:0.38, T:0.07
Consensus pattern (18 bp):
AGGAGGCTACCGAGGCGA
Left flanking sequence: Indices 296378 -- 296877
ACCGGAAAGACTGGATAGACCGGAGCGTCTGGACCTGAAACCTGAGCCGAGAGATCCCCCCAGAG
AGCCCGGTTCTCGTGAAATCCTGAGGGTTCCGTCACGAGAGGTGCCGAAGGAGGTGAAGGACGAG
AAGAAGGAGTCGAAGGAGCCAGCGGAGCCCGTCAAGGAGTCGAAGGAGCCTACCAAACCTCTGGA
ACCCAAGGAGCTGCTACGAAAAACGGAGGACCCGAAAGATGCTAAGGATTTGAAGGATCCGAAGG
CTCCTGTATCAACCGAGTCTGCTAAGTCGAAGCCCTTGGAAGCTACCAAATCTGACGTTCTCGAC
TCGGCTGGCGTTGAGACAACCAAGCCTACTGAGCCTACTAAACCGGAGTCCGCTAAGCTGCTACC
GAAGCCCTCCGACGCTGCGCTGGAACAGCCTGTGAAACAGTCCACTGAGGACGCAAAGCCAGCCA
AGGAAGATGAACCGAGGCCGCTGGTTGAATTGAAGGCCGCTGCTG
Right flanking sequence: Indices 297002 -- 297501
AAAGGACGCTACTAAGGACACTCAGGATGCTACAAAGCCCGATGTAGTCCCGAAGGATCTTAAGG
ACCTGGAGGCACTGAAGCCCCAGGAACCCCAAGAGCCTGTGAAGGTAGTAAAAACCCCTTCGAAT
GACTCCAAAGACCCTCCCAAAGATTCGCAAGCCCCTCCCAAAGACTCGCAAGCCCCTCCCAAAGA
CTCGCAAGCCCCTGCCAAAGACCTCAGTGCCACCTCCACCGCTCCCAAGGAGCCCCCGTCTGCCG
CCTCTAAGCCCCTGGAAGCCTCCAAAGCCTCCAAACCCACCACGCCAGACAACAAGCCGTCCGGA
AAACCAGCCGAGCCCGTCTCGAAACCAATTGAAGCCAAGGAGACCCCGAAACTGGCTCCTTCGCC
CAAGCTGGCCCCAAAACTGGCTCCGTCTCCAAAACTGGTGCCCAAGCAGGCTCCCAACCCGACTC
CCGCGCCGTCCACTCCCGGTCCCAAGACCAAGAAGTCCTTCTCCG
Found at i:297169 original size:21 final size:21
Alignment explanation
Indices: 297143--297218 Score: 134
Period size: 21 Copynumber: 3.6 Consensus size: 21
297133 ACTCCAAAGA
*
297143 CCCTCCCAAAGATTCGCAAGC
1 CCCTCCCAAAGACTCGCAAGC
297164 CCCTCCCAAAGACTCGCAAGC
1 CCCTCCCAAAGACTCGCAAGC
297185 CCCTCCCAAAGACTCGCAAGC
1 CCCTCCCAAAGACTCGCAAGC
*
297206 CCCTGCCAAAGAC
1 CCCTCCCAAAGAC
297219 CTCAGTGCCA
Statistics
Matches: 53, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 53 1.00
ACGTcount: A:0.29, C:0.46, G:0.14, T:0.11
Consensus pattern (21 bp):
CCCTCCCAAAGACTCGCAAGC
Left flanking sequence: Indices 296643 -- 297142
GTATCAACCGAGTCTGCTAAGTCGAAGCCCTTGGAAGCTACCAAATCTGACGTTCTCGACTCGGC
TGGCGTTGAGACAACCAAGCCTACTGAGCCTACTAAACCGGAGTCCGCTAAGCTGCTACCGAAGC
CCTCCGACGCTGCGCTGGAACAGCCTGTGAAACAGTCCACTGAGGACGCAAAGCCAGCCAAGGAA
GATGAACCGAGGCCGCTGGTTGAATTGAAGGCCGCTGCTGAGGAGGCTACCAAGGCGAAGGAGGC
TGAGACAAAGGAGGCCACCAAGGTAAAGGAGGCTACCGACGCGAAGGAGACTACCGAGGCGGAGA
AGACTACCGAGGTGAAGGCGTCTACCGAGGCGAAAAAGGACGCTACTAAGGACACTCAGGATGCT
ACAAAGCCCGATGTAGTCCCGAAGGATCTTAAGGACCTGGAGGCACTGAAGCCCCAGGAACCCCA
AGAGCCTGTGAAGGTAGTAAAAACCCCTTCGAATGACTCCAAAGA
Right flanking sequence: Indices 297219 -- 297718
CTCAGTGCCACCTCCACCGCTCCCAAGGAGCCCCCGTCTGCCGCCTCTAAGCCCCTGGAAGCCTC
CAAAGCCTCCAAACCCACCACGCCAGACAACAAGCCGTCCGGAAAACCAGCCGAGCCCGTCTCGA
AACCAATTGAAGCCAAGGAGACCCCGAAACTGGCTCCTTCGCCCAAGCTGGCCCCAAAACTGGCT
CCGTCTCCAAAACTGGTGCCCAAGCAGGCTCCCAACCCGACTCCCGCGCCGTCCACTCCCGGTCC
CAAGACCAAGAAGTCCTTCTCCGAGTACAAGCTGCTGCTCAAGGACCGCGAGCCCAAGCTCGAGG
CCACCCCGGCGCTTGCCCAGCCAGACCTGTCGTTTGATACCCTGGCGCTCTCGCCCGTCAAGGAC
CAGCCCGCGCCCGACGACTACTTCCACAACATGGGCCGGTCCGACGTCGATCTGGACACGGAAAC
CGTGCCCGCTGACCTGCCGCCCCGGGTCAAGAACGCCAAGAAGCT
Found at i:299043 original size:9 final size:9
Alignment explanation
Indices: 299025--299065 Score: 73
Period size: 9 Copynumber: 4.6 Consensus size: 9
299015 GGAAGCTAAG
299025 GCTGACAAA
1 GCTGACAAA
*
299034 GCTGAAAAA
1 GCTGACAAA
299043 GCTGACAAA
1 GCTGACAAA
299052 GCTGACAAA
1 GCTGACAAA
299061 GCTGA
1 GCTGA
299066 GGCTGAGGAG
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
9 30 1.00
ACGTcount: A:0.44, C:0.20, G:0.24, T:0.12
Consensus pattern (9 bp):
GCTGACAAA
Left flanking sequence: Indices 298525 -- 299024
TCTTTTTGGCTGCCCGGAACGGCCACGCCGAGTTGGTGGACATCATCCTCGGGCTCGACCTGCTG
GACTTTTCGTTGGACACCGAGAACGACTGCGGGGTGACGGTGTTGTTGGCGAGTGTGGGCCGCGA
CCACGTGGACGTGGTGGAGCTGTTGCTCTCCAAGGGCGCTGACCCGTTCAAGGTGCGGGCGGCTG
ACCAGCGCAACGCGTTGCAGATTGCCCAGGCGGCCATCAAGTACAACCCGCACGAGGTGGCGCTT
ATCCAGCAGTACATGGAGAAACGGACCAAGTTGAAGCTGAGAGTGAGCTCGAGAGCTGGCTCGCG
GGCGCCGTCGATTGCTCCGCTGGAAGGGAGCGACGAGGAGGAGCAGGAGATTGTGGTGGCTAAGC
GGAGACGCGTGGAGAAGAAGGGAGAGGCTGATGCCAAGGATGATGCCGGAGCTAAGGCTGAAGGG
ACGGAAGCCAAGGCTGAGGCAAAGACTGAGAAGCCGGAAGCTAAG
Right flanking sequence: Indices 299066 -- 299565
GGCTGAGGAGGCTGAACCAAAGGTGGACTCTGTGGATCCCAAACCTGAGGCCGGCTCAGACCCTT
CTGAGTCCAAAACTGACCATGCGCGATCCGACAAGACCGACCACCACGAGGAGCCTCCCCGACCC
AAACGAGTGCGTTCCGAAGCTGACCACGACGAGCACGTTATCAAGCGAGTACGCTCAGAGACCCT
GGAGCATCCCAAGCTGCTGCTGCCTTCGCCAGCTCCCGAGCACCACCCACAGCACCAGCGCGATG
CCGACGAGGCCAGAGCGTGGCAGCGAAAGCAGGAGCTCAAGAAGCAGGCCCGGCGTGACATGTTC
CTCAAGGCCGAGCGCGAGAAGGAACGCTTGCGCCACGAAGCCGAGATCGAGCAGCGCGAAGCAGA
GAAGCGTCGTGCCCACGAGCGTGAGGCTGAGCGCGAGCGGCAGGCTGAGGAAGCTGAAAACAAGA
GCAAGCTTGTGCAGCAGCAGCGGGTCGGGTTGCGGCGCCAGCTCA
Found at i:308315 original size:38 final size:38
Alignment explanation
Indices: 308273--308371 Score: 171
Period size: 38 Copynumber: 2.6 Consensus size: 38
308263 TGCTTAAGGG
308273 GCTCTATATTGTTATGCAACTATCTGAGTGCTCGAGCC
1 GCTCTATATTGTTATGCAACTATCTGAGTGCTCGAGCC
* *
308311 GCTCTACATTGTTATGCAACTATCTGAGTGCTCGAGCG
1 GCTCTATATTGTTATGCAACTATCTGAGTGCTCGAGCC
*
308349 GCTCTGTATTGTTATGCAACTAT
1 GCTCTATATTGTTATGCAACTAT
308372 TGTTTCTATT
Statistics
Matches: 57, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
38 57 1.00
ACGTcount: A:0.21, C:0.22, G:0.21, T:0.35
Consensus pattern (38 bp):
GCTCTATATTGTTATGCAACTATCTGAGTGCTCGAGCC
Left flanking sequence: Indices 307773 -- 308272
TAAGCTAGACGCCTACGTCATAGGACATGTAGAGGTTATCAGATTATGAAGTTATTATTTTGCAA
TTTAGATCGTTTTTCACTTTCAAATCAGGGTGAGGTCAAAAGGCTAACATCGAATACCCGGGGAT
AAGTATGTCAGTTCTGATCAGAATCGACTCAAGAATAGTTTGCTCAAGTCTGCTTTCAAGCATGG
CGTAAAAAAATACGTCTGCGGATGAATCCTGCAGAACGTCTAAATTTAGCGTGAGACTGACATTG
ATTTTCAAATTGAGTGGGTCCTCTACAACAAAAATAGGCTGACTTGATAGGTAACAAAACGTATT
TTTCACATGAGAGTTTGGTTCACATTGATGTATTATGTTGTAAGTTTGTTGTACACCTATTTTTT
TGGCATTTTCGTATTTTTTTGTACCTCGTTAGTGTATGTACGGAAATTTTTACCGAACTTCAAGG
GTGCATGATTTCGAACAAAGCGTAATAGAAGCGAGTGCTTAAGGG
Right flanking sequence: Indices 308372 -- 308871
TGTTTCTATTTTTGTTACGCTTCCTGAAATTGTTTAGCCTCGAGAGCTCAGTATCATACTGTTGT
AGTAACATCGATCTCCAATTTATCAGACGTCTGTAAAGCGAGTTGGTGTATGTTGAAAAAGGGTG
TGATTCATGACACACATACTCGGTAGTTATTAGCGAAAAGCTTATAACACAATAGCCTGTTGCTT
CAAGTTTACTTCAACACAACCTCTATTGTGTTGAAGTTGACAATTCTCTAGATTACCCCTAAATG
ACGTGAGTACGCGGTAGCAATCATTTTCTGCTACGCCGACTCCACTAGTCGTAACCTTTAACAAG
ATTCGGACGCCGAAGGGGGATTTTTAATACTTACGTTCGATGGACTTAGTGTTCAAAGAAAGGTC
GTAAATAAAACTTTAATGGCATTGAACGACTCCCACTTTTGGAAAGACGTCTGGTTGCTGGCTCG
ACCGGTGGAAGTCGAACGGTTCAGCAACACAGAGCTGTCATTCGC
Found at i:312034 original size:11 final size:11
Alignment explanation
Indices: 312020--312059 Score: 71
Period size: 11 Copynumber: 3.6 Consensus size: 11
312010 GGTTGGGGTA
312020 GGGTGGTGATG
1 GGGTGGTGATG
312031 GGGTGGTGATG
1 GGGTGGTGATG
*
312042 GGGTGGTTATG
1 GGGTGGTGATG
312053 GGGTGGT
1 GGGTGGT
312060 AGACGTAGAG
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
11 28 1.00
ACGTcount: A:0.07, C:0.00, G:0.62, T:0.30
Consensus pattern (11 bp):
GGGTGGTGATG
Left flanking sequence: Indices 311520 -- 312019
CGCAGGTCCACGGTGTCCACGGGATCGGTGCCCAATGCCAGCAGCAGCAGCAACCCCAGCGGGCC
CGGGCCCGAAGAGGCCGGGCCGTCGGAAAACATCCGCCGGCGGGGCAGCGACGTGCTTTGGAGGT
CGCTGCGGTGGTGCGAGCGGCGCAAGATCTGCTCGGCGTCGCTCGAGAGGTTGCCCAACTCGCTG
GTGGGGCCTGCCAGCAGCAGCAGGTAGTGGAGGGGGGACGAGCCGCCGCGGCGCAGCGACGGGGG
TGCGGGCGCGTCCAGCAGCGGGTTGACGAAGAGCGGCAGCAGCGGGGCATGTGGGTACAGCGACT
GCTGGGAGTCGTCGCCCAGCTGGGACGTCCGCTGGGTGTCGTTGGGGTGGGACATGGTGCGTGAA
AAATGAGACGCGTTTGATAATTATGCTGTTTTGGGACGTCACGTGGGGATGAGAAGAAGGAGAGT
GGTGGGGTGGGGGGTGGTTGACGTGGTGGTGTGGGGGTTGGGGTA
Right flanking sequence: Indices 312060 -- 312559
AGACGTAGAGTAGATGTGGTAAAAGTGGTGGTCGTGGACGTGGAGAAGACGTGGTAGAATCGTAG
ATGGAGGTAATTTACCGTTTTGGGACGTCACGTGAGTGATAGATGGACGGGATTGTGGAGGGGGA
TGAATGGGTGGCAGGGGTGAGTGGAGTGTGGTGGTAGTGTGTGGTGGTAGTGTGTGGTAGTGGTA
GAAGCTGGTATATGTGGATAGTAACCATGCTCTTAGCGGGCCATGTGGCAACTAGGATGGGTGGA
AAATAGTGGACGGTAAGTTGTAGTAGTGTGGGTAGAGATGGTATGTAGTGGTGGTGGTGTGGTAG
AGGTGGTATTTAGTGGTGGTAGAGGTGTCTCGTGGTTGCATTGATGAAGATAGAGTCCTGTAGGT
GGATGGGTAGTGGTAGTGGTGTACTCCATATATGCTGCATTGGGACGTCACGTGGAGAGTAAGGA
GAATAGGGAGTGTAAAGGGGTAAAGGAGCTATGAAAGGCTTTCAG
Found at i:312034 original size:22 final size:23
Alignment explanation
Indices: 311999--312056 Score: 59
Period size: 22 Copynumber: 2.6 Consensus size: 23
311989 TGGTTGACGT
*
311999 GGTGGTG-TGGGGGTTGG-GGTAG
1 GGTGGTGAT-GGGGTTGGTGATAG
*
312021 GGTGGTGATGGGG-TGGTGATGG
1 GGTGGTGATGGGGTTGGTGATAG
*
312043 GGTGGTTATGGGGT
1 GGTGGTGATGGGGT
312057 GGTAGACGTA
Statistics
Matches: 30, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
21 3 0.10
22 26 0.87
23 1 0.03
ACGTcount: A:0.07, C:0.00, G:0.64, T:0.29
Consensus pattern (23 bp):
GGTGGTGATGGGGTTGGTGATAG
Left flanking sequence: Indices 311499 -- 311998
ATGTTGGTGCCCCAGATGACCCGCAGGTCCACGGTGTCCACGGGATCGGTGCCCAATGCCAGCAG
CAGCAGCAACCCCAGCGGGCCCGGGCCCGAAGAGGCCGGGCCGTCGGAAAACATCCGCCGGCGGG
GCAGCGACGTGCTTTGGAGGTCGCTGCGGTGGTGCGAGCGGCGCAAGATCTGCTCGGCGTCGCTC
GAGAGGTTGCCCAACTCGCTGGTGGGGCCTGCCAGCAGCAGCAGGTAGTGGAGGGGGGACGAGCC
GCCGCGGCGCAGCGACGGGGGTGCGGGCGCGTCCAGCAGCGGGTTGACGAAGAGCGGCAGCAGCG
GGGCATGTGGGTACAGCGACTGCTGGGAGTCGTCGCCCAGCTGGGACGTCCGCTGGGTGTCGTTG
GGGTGGGACATGGTGCGTGAAAAATGAGACGCGTTTGATAATTATGCTGTTTTGGGACGTCACGT
GGGGATGAGAAGAAGGAGAGTGGTGGGGTGGGGGGTGGTTGACGT
Right flanking sequence: Indices 312057 -- 312556
GGTAGACGTAGAGTAGATGTGGTAAAAGTGGTGGTCGTGGACGTGGAGAAGACGTGGTAGAATCG
TAGATGGAGGTAATTTACCGTTTTGGGACGTCACGTGAGTGATAGATGGACGGGATTGTGGAGGG
GGATGAATGGGTGGCAGGGGTGAGTGGAGTGTGGTGGTAGTGTGTGGTGGTAGTGTGTGGTAGTG
GTAGAAGCTGGTATATGTGGATAGTAACCATGCTCTTAGCGGGCCATGTGGCAACTAGGATGGGT
GGAAAATAGTGGACGGTAAGTTGTAGTAGTGTGGGTAGAGATGGTATGTAGTGGTGGTGGTGTGG
TAGAGGTGGTATTTAGTGGTGGTAGAGGTGTCTCGTGGTTGCATTGATGAAGATAGAGTCCTGTA
GGTGGATGGGTAGTGGTAGTGGTGTACTCCATATATGCTGCATTGGGACGTCACGTGGAGAGTAA
GGAGAATAGGGAGTGTAAAGGGGTAAAGGAGCTATGAAAGGCTTT
Found at i:312231 original size:13 final size:13
Alignment explanation
Indices: 312215--312247 Score: 66
Period size: 13 Copynumber: 2.5 Consensus size: 13
312205 GGTGAGTGGA
312215 GTGTGGTGGTAGT
1 GTGTGGTGGTAGT
312228 GTGTGGTGGTAGT
1 GTGTGGTGGTAGT
312241 GTGTGGT
1 GTGTGGT
312248 AGTGGTAGAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.06, C:0.00, G:0.55, T:0.39
Consensus pattern (13 bp):
GTGTGGTGGTAGT
Left flanking sequence: Indices 311715 -- 312214
GTGGGGCCTGCCAGCAGCAGCAGGTAGTGGAGGGGGGACGAGCCGCCGCGGCGCAGCGACGGGGG
TGCGGGCGCGTCCAGCAGCGGGTTGACGAAGAGCGGCAGCAGCGGGGCATGTGGGTACAGCGACT
GCTGGGAGTCGTCGCCCAGCTGGGACGTCCGCTGGGTGTCGTTGGGGTGGGACATGGTGCGTGAA
AAATGAGACGCGTTTGATAATTATGCTGTTTTGGGACGTCACGTGGGGATGAGAAGAAGGAGAGT
GGTGGGGTGGGGGGTGGTTGACGTGGTGGTGTGGGGGTTGGGGTAGGGTGGTGATGGGGTGGTGA
TGGGGTGGTTATGGGGTGGTAGACGTAGAGTAGATGTGGTAAAAGTGGTGGTCGTGGACGTGGAG
AAGACGTGGTAGAATCGTAGATGGAGGTAATTTACCGTTTTGGGACGTCACGTGAGTGATAGATG
GACGGGATTGTGGAGGGGGATGAATGGGTGGCAGGGGTGAGTGGA
Right flanking sequence: Indices 312248 -- 312747
AGTGGTAGAAGCTGGTATATGTGGATAGTAACCATGCTCTTAGCGGGCCATGTGGCAACTAGGAT
GGGTGGAAAATAGTGGACGGTAAGTTGTAGTAGTGTGGGTAGAGATGGTATGTAGTGGTGGTGGT
GTGGTAGAGGTGGTATTTAGTGGTGGTAGAGGTGTCTCGTGGTTGCATTGATGAAGATAGAGTCC
TGTAGGTGGATGGGTAGTGGTAGTGGTGTACTCCATATATGCTGCATTGGGACGTCACGTGGAGA
GTAAGGAGAATAGGGAGTGTAAAGGGGTAAAGGAGCTATGAAAGGCTTTCAGGGGGTGGTGAAAG
GGCTGATATTAGCGGATAGAAATCGCAAAAGTATTCAATAGGTGGTGGTGGTGGTGGTGGTGGTT
ATGTTATAGCAATGGTAGTGGTAGTGGTAGCGCAATACTCGAAGTAGTACCAAGCATACCACGAA
AAGTAAAAACTACGCAATTCGTAGTTTGAAAGGTATCTTACAGTT
Found at i:312233 original size:10 final size:11
Alignment explanation
Indices: 312210--312251 Score: 52
Period size: 10 Copynumber: 3.8 Consensus size: 11
312200 GCAGGGGTGA
312210 GTGG-AGTGTG
1 GTGGTAGTGTG
312220 GTGGTAGTGTGTG
1 GTGGTA--GTGTG
312233 GTGGTAGTGT-
1 GTGGTAGTGTG
312243 GTGGTAGTG
1 GTGGTAGTG
312252 GTAGAAGCTG
Statistics
Matches: 29, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
10 13 0.45
11 5 0.17
13 11 0.38
ACGTcount: A:0.10, C:0.00, G:0.55, T:0.36
Consensus pattern (11 bp):
GTGGTAGTGTG
Left flanking sequence: Indices 311710 -- 312209
CGCTGGTGGGGCCTGCCAGCAGCAGCAGGTAGTGGAGGGGGGACGAGCCGCCGCGGCGCAGCGAC
GGGGGTGCGGGCGCGTCCAGCAGCGGGTTGACGAAGAGCGGCAGCAGCGGGGCATGTGGGTACAG
CGACTGCTGGGAGTCGTCGCCCAGCTGGGACGTCCGCTGGGTGTCGTTGGGGTGGGACATGGTGC
GTGAAAAATGAGACGCGTTTGATAATTATGCTGTTTTGGGACGTCACGTGGGGATGAGAAGAAGG
AGAGTGGTGGGGTGGGGGGTGGTTGACGTGGTGGTGTGGGGGTTGGGGTAGGGTGGTGATGGGGT
GGTGATGGGGTGGTTATGGGGTGGTAGACGTAGAGTAGATGTGGTAAAAGTGGTGGTCGTGGACG
TGGAGAAGACGTGGTAGAATCGTAGATGGAGGTAATTTACCGTTTTGGGACGTCACGTGAGTGAT
AGATGGACGGGATTGTGGAGGGGGATGAATGGGTGGCAGGGGTGA
Right flanking sequence: Indices 312252 -- 312751
GTAGAAGCTGGTATATGTGGATAGTAACCATGCTCTTAGCGGGCCATGTGGCAACTAGGATGGGT
GGAAAATAGTGGACGGTAAGTTGTAGTAGTGTGGGTAGAGATGGTATGTAGTGGTGGTGGTGTGG
TAGAGGTGGTATTTAGTGGTGGTAGAGGTGTCTCGTGGTTGCATTGATGAAGATAGAGTCCTGTA
GGTGGATGGGTAGTGGTAGTGGTGTACTCCATATATGCTGCATTGGGACGTCACGTGGAGAGTAA
GGAGAATAGGGAGTGTAAAGGGGTAAAGGAGCTATGAAAGGCTTTCAGGGGGTGGTGAAAGGGCT
GATATTAGCGGATAGAAATCGCAAAAGTATTCAATAGGTGGTGGTGGTGGTGGTGGTGGTTATGT
TATAGCAATGGTAGTGGTAGTGGTAGCGCAATACTCGAAGTAGTACCAAGCATACCACGAAAAGT
AAAAACTACGCAATTCGTAGTTTGAAAGGTATCTTACAGTTTCCA
Found at i:312385 original size:30 final size:31
Alignment explanation
Indices: 312345--312404 Score: 95
Period size: 30 Copynumber: 2.0 Consensus size: 31
312335 AGTTGTAGTA
312345 GTGTGGGTAGAGATGGTATGTAGTGGTGGTG
1 GTGTGGGTAGAGATGGTATGTAGTGGTGGTG
* *
312376 GTGT-GGTAGAGGTGGTATTTAGTGGTGGT
1 GTGTGGGTAGAGATGGTATGTAGTGGTGGT
312405 AGAGGTGTCT
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
30 23 0.85
31 4 0.15
ACGTcount: A:0.15, C:0.00, G:0.50, T:0.35
Consensus pattern (31 bp):
GTGTGGGTAGAGATGGTATGTAGTGGTGGTG
Left flanking sequence: Indices 311845 -- 312344
GCTGGGAGTCGTCGCCCAGCTGGGACGTCCGCTGGGTGTCGTTGGGGTGGGACATGGTGCGTGAA
AAATGAGACGCGTTTGATAATTATGCTGTTTTGGGACGTCACGTGGGGATGAGAAGAAGGAGAGT
GGTGGGGTGGGGGGTGGTTGACGTGGTGGTGTGGGGGTTGGGGTAGGGTGGTGATGGGGTGGTGA
TGGGGTGGTTATGGGGTGGTAGACGTAGAGTAGATGTGGTAAAAGTGGTGGTCGTGGACGTGGAG
AAGACGTGGTAGAATCGTAGATGGAGGTAATTTACCGTTTTGGGACGTCACGTGAGTGATAGATG
GACGGGATTGTGGAGGGGGATGAATGGGTGGCAGGGGTGAGTGGAGTGTGGTGGTAGTGTGTGGT
GGTAGTGTGTGGTAGTGGTAGAAGCTGGTATATGTGGATAGTAACCATGCTCTTAGCGGGCCATG
TGGCAACTAGGATGGGTGGAAAATAGTGGACGGTAAGTTGTAGTA
Right flanking sequence: Indices 312405 -- 312904
AGAGGTGTCTCGTGGTTGCATTGATGAAGATAGAGTCCTGTAGGTGGATGGGTAGTGGTAGTGGT
GTACTCCATATATGCTGCATTGGGACGTCACGTGGAGAGTAAGGAGAATAGGGAGTGTAAAGGGG
TAAAGGAGCTATGAAAGGCTTTCAGGGGGTGGTGAAAGGGCTGATATTAGCGGATAGAAATCGCA
AAAGTATTCAATAGGTGGTGGTGGTGGTGGTGGTGGTTATGTTATAGCAATGGTAGTGGTAGTGG
TAGCGCAATACTCGAAGTAGTACCAAGCATACCACGAAAAGTAAAAACTACGCAATTCGTAGTTT
GAAAGGTATCTTACAGTTTCCAACTTCTCTATCCCATTCCTTCCTCCCATACATTCCTCCCATTC
CTTTCTTCCCACTTCTCTCCACCCATCTTCCCATCTTCCCACCTTCTCACTTCTCACTCATCTCT
GGTAGCGCCCACATGCTGTACCGGCTCGAGTTGAAGGTACCCTTC
Found at i:312779 original size:13 final size:13
Alignment explanation
Indices: 312761--312797 Score: 56
Period size: 13 Copynumber: 2.8 Consensus size: 13
312751 AACTTCTCTA
312761 TCCCATTCCTTCC
1 TCCCATTCCTTCC
* *
312774 TCCCATACATTCC
1 TCCCATTCCTTCC
312787 TCCCATTCCTT
1 TCCCATTCCTT
312798 TCTTCCCACT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.14, C:0.49, G:0.00, T:0.38
Consensus pattern (13 bp):
TCCCATTCCTTCC
Left flanking sequence: Indices 312261 -- 312760
GGTATATGTGGATAGTAACCATGCTCTTAGCGGGCCATGTGGCAACTAGGATGGGTGGAAAATAG
TGGACGGTAAGTTGTAGTAGTGTGGGTAGAGATGGTATGTAGTGGTGGTGGTGTGGTAGAGGTGG
TATTTAGTGGTGGTAGAGGTGTCTCGTGGTTGCATTGATGAAGATAGAGTCCTGTAGGTGGATGG
GTAGTGGTAGTGGTGTACTCCATATATGCTGCATTGGGACGTCACGTGGAGAGTAAGGAGAATAG
GGAGTGTAAAGGGGTAAAGGAGCTATGAAAGGCTTTCAGGGGGTGGTGAAAGGGCTGATATTAGC
GGATAGAAATCGCAAAAGTATTCAATAGGTGGTGGTGGTGGTGGTGGTGGTTATGTTATAGCAAT
GGTAGTGGTAGTGGTAGCGCAATACTCGAAGTAGTACCAAGCATACCACGAAAAGTAAAAACTAC
GCAATTCGTAGTTTGAAAGGTATCTTACAGTTTCCAACTTCTCTA
Right flanking sequence: Indices 312798 -- 313297
TCTTCCCACTTCTCTCCACCCATCTTCCCATCTTCCCACCTTCTCACTTCTCACTCATCTCTGGT
AGCGCCCACATGCTGTACCGGCTCGAGTTGAAGGTACCCTTCGAGACGGCCCGCCAGGCGGAGAT
CGCCCGCGACACCTTGCGTCCCGACCCCGTGCTCAAGGACCACGAGACCAGCATCGAGTACGCCG
CCGTCGACTCGGTGTTGGTGGTGACGTTCTCGGGGATCTCGGACCGGGTGATTCGAGTGGCGATT
CTGAACTGCATCGACAACATCAAGGTAATTATCGAGACGATGGACGTGTTTGACGGGAAGAAAGA
CGTCAAGTGGGAGGTTGAGCCGCTGGAGGAGAGGTGAAAGGGGCGGGTCAGTTGAGTGGAGAGGT
CAGTTGAGTGACAGAGTTCAGTTCTGAGTGAAGTTTAGTTCTGAGTGAAGTTTCTTCTTGTTGTT
CTGGCAGCCCACCTCCAATCAGCGTCCAAACTCTCGCTGGTTCGC
Found at i:313208 original size:18 final size:17
Alignment explanation
Indices: 313168--313210 Score: 59
Period size: 17 Copynumber: 2.5 Consensus size: 17
313158 GAAAGGGGCG
*
313168 GGTCAGTTGAGTGGAGA
1 GGTCAGTTGAGTGCAGA
313185 GGTCAGTTGAGTGACAGA
1 GGTCAGTTGAGTG-CAGA
*
313203 GTTCAGTT
1 GGTCAGTT
313211 CTGAGTGAAG
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 13 0.57
18 10 0.43
ACGTcount: A:0.23, C:0.09, G:0.40, T:0.28
Consensus pattern (17 bp):
GGTCAGTTGAGTGCAGA
Left flanking sequence: Indices 312668 -- 313167
CGCAATACTCGAAGTAGTACCAAGCATACCACGAAAAGTAAAAACTACGCAATTCGTAGTTTGAA
AGGTATCTTACAGTTTCCAACTTCTCTATCCCATTCCTTCCTCCCATACATTCCTCCCATTCCTT
TCTTCCCACTTCTCTCCACCCATCTTCCCATCTTCCCACCTTCTCACTTCTCACTCATCTCTGGT
AGCGCCCACATGCTGTACCGGCTCGAGTTGAAGGTACCCTTCGAGACGGCCCGCCAGGCGGAGAT
CGCCCGCGACACCTTGCGTCCCGACCCCGTGCTCAAGGACCACGAGACCAGCATCGAGTACGCCG
CCGTCGACTCGGTGTTGGTGGTGACGTTCTCGGGGATCTCGGACCGGGTGATTCGAGTGGCGATT
CTGAACTGCATCGACAACATCAAGGTAATTATCGAGACGATGGACGTGTTTGACGGGAAGAAAGA
CGTCAAGTGGGAGGTTGAGCCGCTGGAGGAGAGGTGAAAGGGGCG
Right flanking sequence: Indices 313211 -- 313710
CTGAGTGAAGTTTAGTTCTGAGTGAAGTTTCTTCTTGTTGTTCTGGCAGCCCACCTCCAATCAGC
GTCCAAACTCTCGCTGGTTCGCTGACCTATTACCACTCATCTCCACTATCTCCACTATCTAGACA
ATACACAATTTACGACGAACAAGCGTAGCAATGGTTTAAACTACAAGCCATACCACACACTCTGA
GCGACACCACGTTACTCCCAGCCCCGTAGTAGCCTAATTGTCTCTTTCGTCGCTACCACCACCCC
TCCTTAACCACCACCACCACCCCCACTCCTTCCCCACCCGTTACGAGCCCCCGCCTACTTAATCG
CGAAATCCATAGACCCACCATGGCTCCCAGCAAGCGTATCCACACCGGCGCCGACTTGGCGGCGT
TCCAGCGCTCGCAGGCCCTCGCCAGGCTCCAGCGCACCCTCCTCCGCACCATTGAGAAGATCAAG
GGCCGCCTGGTGCCCCACGACGTCCTCAATCCCAACATCGTCACC
Found at i:313227 original size:17 final size:17
Alignment explanation
Indices: 313202--313240 Score: 69
Period size: 17 Copynumber: 2.3 Consensus size: 17
313192 TGAGTGACAG
*
313202 AGTTCAGTTCTGAGTGA
1 AGTTTAGTTCTGAGTGA
313219 AGTTTAGTTCTGAGTGA
1 AGTTTAGTTCTGAGTGA
313236 AGTTT
1 AGTTT
313241 CTTCTTGTTG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.23, C:0.08, G:0.28, T:0.41
Consensus pattern (17 bp):
AGTTTAGTTCTGAGTGA
Left flanking sequence: Indices 312702 -- 313201
AAAGTAAAAACTACGCAATTCGTAGTTTGAAAGGTATCTTACAGTTTCCAACTTCTCTATCCCAT
TCCTTCCTCCCATACATTCCTCCCATTCCTTTCTTCCCACTTCTCTCCACCCATCTTCCCATCTT
CCCACCTTCTCACTTCTCACTCATCTCTGGTAGCGCCCACATGCTGTACCGGCTCGAGTTGAAGG
TACCCTTCGAGACGGCCCGCCAGGCGGAGATCGCCCGCGACACCTTGCGTCCCGACCCCGTGCTC
AAGGACCACGAGACCAGCATCGAGTACGCCGCCGTCGACTCGGTGTTGGTGGTGACGTTCTCGGG
GATCTCGGACCGGGTGATTCGAGTGGCGATTCTGAACTGCATCGACAACATCAAGGTAATTATCG
AGACGATGGACGTGTTTGACGGGAAGAAAGACGTCAAGTGGGAGGTTGAGCCGCTGGAGGAGAGG
TGAAAGGGGCGGGTCAGTTGAGTGGAGAGGTCAGTTGAGTGACAG
Right flanking sequence: Indices 313241 -- 313740
CTTCTTGTTGTTCTGGCAGCCCACCTCCAATCAGCGTCCAAACTCTCGCTGGTTCGCTGACCTAT
TACCACTCATCTCCACTATCTCCACTATCTAGACAATACACAATTTACGACGAACAAGCGTAGCA
ATGGTTTAAACTACAAGCCATACCACACACTCTGAGCGACACCACGTTACTCCCAGCCCCGTAGT
AGCCTAATTGTCTCTTTCGTCGCTACCACCACCCCTCCTTAACCACCACCACCACCCCCACTCCT
TCCCCACCCGTTACGAGCCCCCGCCTACTTAATCGCGAAATCCATAGACCCACCATGGCTCCCAG
CAAGCGTATCCACACCGGCGCCGACTTGGCGGCGTTCCAGCGCTCGCAGGCCCTCGCCAGGCTCC
AGCGCACCCTCCTCCGCACCATTGAGAAGATCAAGGGCCGCCTGGTGCCCCACGACGTCCTCAAT
CCCAACATCGTCACCCGCGACCACCGCACCTCCGCCAAATTAGCG
Found at i:315012 original size:11 final size:11
Alignment explanation
Indices: 315004--315028 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
314994 GGGTGAAATA
315004 CGGAAGAAAAG
1 CGGAAGAAAAG
315015 CGGAAGAAAAG
1 CGGAAGAAAAG
315026 CGG
1 CGG
315029 GTGACAGAGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.48, C:0.12, G:0.40, T:0.00
Consensus pattern (11 bp):
CGGAAGAAAAG
Left flanking sequence: Indices 314504 -- 315003
TGTACCCGTGGCGTGACTCGCACGGCCGCCCGTTGCCCGAGCTGGACCCGCCGGCGGACGCGCTG
GCGACAATGGCACCCACCCACACCACCCGCAGCAACATCCTGATGACGGCCGCTTTCTGGGCACG
GCGCTAGCCACGGCGCGGCCACCACGCTGGTGCTACCCGCCTCCGTCCCGCCTGTATGCACGCCA
CGCTCGGTGCCTGACAAGGGTGCATGCCCGATGGGGTGACCAGGGCACGTTGCAGGGGTTGCAGG
CCAGTGGTGCAACGGACAATGGGGTGTGTGGGGCACCGATCTGGGCAATTGGCTGGGGCCACTGC
ATGTGGTTTCGGGAACTACCAGAGAGCGTGTTACGACCAAGTCCGGCCCGGATATACGAGGTGTC
CCGAAACGGACTGGCAGCCAGATGAAACTCCGAAAAAAGACGAGAAAATATGTAGCTCAGATGAA
GATAGACACACAATAGAGGCGAAAAACGGGTGAAAGGGTGAAATA
Right flanking sequence: Indices 315029 -- 315528
GTGACAGAGAGAAAAAAGAGAGAAAACAGAGAGAACAGAGAGAAACACCCATTGCCGCGGGCCCG
TAGAGCGCCACAGCGCACGCATTGGCCCCATACCCGAAAACGCAACCCGCCGTAGCCCCGCTATT
TTTAACTCAGCCCCACTTCCCCTCTGGGAAACGCTCCCAGCAGTGGAAATCCTCGCAACCAACGG
TACCCAGGGTGTCTCCACCACCGTCCACCGTTCCCACCCACCCCCTGCACCACCGCCTTCCGTGC
TGGCGACCACCCCACTATTCCATTGTGGGCCGGTTTCGACGCACGCATAATAACTCGCAGATACC
CAGCTTTTTCGTGGAGAACGGAGGTGTGGGTTCCGAAGACACGGGCGCCGCCACCGCCACACCCA
CGCCCGCGAGACACGATGGCCACCCACCACTGCCCTCTCCACCCCCGTAGCCCCACCACCTACCC
ACCTCCTCCTTCTCCCGCTCGCCCCACCCAGTTCCTTCCCGTTCC
Found at i:315071 original size:11 final size:11
Alignment explanation
Indices: 315034--315063 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
315024 AGCGGGTGAC
315034 AGAGAGAAAAA
1 AGAGAGAAAAA
*
315045 AGAGAGAAAAC
1 AGAGAGAAAAA
315056 AGAGAGAA
1 AGAGAGAA
315064 CAGAGAGAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.67, C:0.03, G:0.30, T:0.00
Consensus pattern (11 bp):
AGAGAGAAAAA
Left flanking sequence: Indices 314534 -- 315033
CGTTGCCCGAGCTGGACCCGCCGGCGGACGCGCTGGCGACAATGGCACCCACCCACACCACCCGC
AGCAACATCCTGATGACGGCCGCTTTCTGGGCACGGCGCTAGCCACGGCGCGGCCACCACGCTGG
TGCTACCCGCCTCCGTCCCGCCTGTATGCACGCCACGCTCGGTGCCTGACAAGGGTGCATGCCCG
ATGGGGTGACCAGGGCACGTTGCAGGGGTTGCAGGCCAGTGGTGCAACGGACAATGGGGTGTGTG
GGGCACCGATCTGGGCAATTGGCTGGGGCCACTGCATGTGGTTTCGGGAACTACCAGAGAGCGTG
TTACGACCAAGTCCGGCCCGGATATACGAGGTGTCCCGAAACGGACTGGCAGCCAGATGAAACTC
CGAAAAAAGACGAGAAAATATGTAGCTCAGATGAAGATAGACACACAATAGAGGCGAAAAACGGG
TGAAAGGGTGAAATACGGAAGAAAAGCGGAAGAAAAGCGGGTGAC
Right flanking sequence: Indices 315064 -- 315563
CAGAGAGAAACACCCATTGCCGCGGGCCCGTAGAGCGCCACAGCGCACGCATTGGCCCCATACCC
GAAAACGCAACCCGCCGTAGCCCCGCTATTTTTAACTCAGCCCCACTTCCCCTCTGGGAAACGCT
CCCAGCAGTGGAAATCCTCGCAACCAACGGTACCCAGGGTGTCTCCACCACCGTCCACCGTTCCC
ACCCACCCCCTGCACCACCGCCTTCCGTGCTGGCGACCACCCCACTATTCCATTGTGGGCCGGTT
TCGACGCACGCATAATAACTCGCAGATACCCAGCTTTTTCGTGGAGAACGGAGGTGTGGGTTCCG
AAGACACGGGCGCCGCCACCGCCACACCCACGCCCGCGAGACACGATGGCCACCCACCACTGCCC
TCTCCACCCCCGTAGCCCCACCACCTACCCACCTCCTCCTTCTCCCGCTCGCCCCACCCAGTTCC
TTCCCGTTCCCCGCGACCGGCACACAAGCCCGCATGCCCACCGAG
Found at i:317737 original size:13 final size:13
Alignment explanation
Indices: 317719--317758 Score: 80
Period size: 13 Copynumber: 3.1 Consensus size: 13
317709 TGTTTTAGGC
317719 GGTAGACGTGGGT
1 GGTAGACGTGGGT
317732 GGTAGACGTGGGT
1 GGTAGACGTGGGT
317745 GGTAGACGTGGGT
1 GGTAGACGTGGGT
317758 G
1 G
317759 ATGGCGGCTG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 27 1.00
ACGTcount: A:0.15, C:0.07, G:0.55, T:0.23
Consensus pattern (13 bp):
GGTAGACGTGGGT
Left flanking sequence: Indices 317219 -- 317718
CCGGCGGATGAAGGCGGTGGACGAGCTGATCAACCAGTTGACCGACTACATGTTTGACTTTGTCT
CCAAGACCCGCCGCCAGCGCATCAACCAGCGCAACCGCACCGAGCGGTTGCTGGACCTCTTGGAC
TGGAAGCGCATGGGGCTCGAGTACGTCAAGGCGCGCCAGTTGCTGTTGAAGCGCGCGTACCCCGA
CAAGTTCAAGAACGGCGCCAACCCGTTTGAGAGCGAGCTGGCCAAGTTGACGCGCCCGTTGCTGG
TTCCCGGGCTGCCGCTGGCGGAGCGTGCGTTGATGACGCCCGGCGACCTTGGCTCGTTGCTGGAG
GCGCAGGAGGTGCTCAACACCGAGGACTACATCCTGTTCAAGTTGGGCCTGGTGGGGGTGGACGA
CGACGAGGAGGAGGAACAGTATCCGTTGACGCTCCGCGGCACGTCGGTGCCGCCGGACTCGGACT
AATTATAGTACAGTACGTATCTAGAAAAGTAAGTATGTTTTAGGC
Right flanking sequence: Indices 317759 -- 318258
ATGGCGGCTGGGGTGACGCTGGAGCGACAAGAAGTAGGCTCGTTAATTGGTTTGGTGTTTCTCTG
TGTTCGATTTTTGTGCGTTCTTCGTTTCTTTGCGTTCTTCGTTTCTCTCGTTCTTCGTTTCTCTG
CGTTCTTCGGTGCTTATGCAAGGGCCCCGTGGGGAAAGAAGGTACCGTTTGAGGCGGGAAAAGCT
GGAAGACCACTTGGCAACGGGCCCTCGTTTTGATCGCGTGTGTCACCAACCGGGCTCGGCTGCTC
GGCTTCGGCGATGAGGTTTAATCGGCCAGTTGCACGCTATGTTCCCGTTCCCATGCATAAAAAAT
ACTCGTGTATGACTTAATGGGATACGAGTCGAACAAATTGGGACGCCTGTCCCCGCCACGGGGCA
GTGTTGTGGCTGAAACGGCGACAGGCAACCATACCTGGTGTCTACTGGCACACCAAATGGTGACT
ACTCTCGTACCTCGCTAGTCTCGTATACGTACGTGACTCGCTATT
Found at i:317877 original size:16 final size:17
Alignment explanation
Indices: 317837--317897 Score: 106
Period size: 17 Copynumber: 3.6 Consensus size: 17
317827 TCGATTTTTG
*
317837 TGCGTTCTTCGTTTCTT
1 TGCGTTCTTCGTTTCTC
317854 TGCGTTCTTCGTTTCTC
1 TGCGTTCTTCGTTTCTC
317871 T-CGTTCTTCGTTTCTC
1 TGCGTTCTTCGTTTCTC
317887 TGCGTTCTTCG
1 TGCGTTCTTCG
317898 GTGCTTATGC
Statistics
Matches: 42, Mismatches: 1, Indels: 2
0.93 0.02 0.04
Matches are distributed among these distances:
16 16 0.38
17 26 0.62
ACGTcount: A:0.00, C:0.28, G:0.18, T:0.54
Consensus pattern (17 bp):
TGCGTTCTTCGTTTCTC
Left flanking sequence: Indices 317337 -- 317836
GACCTCTTGGACTGGAAGCGCATGGGGCTCGAGTACGTCAAGGCGCGCCAGTTGCTGTTGAAGCG
CGCGTACCCCGACAAGTTCAAGAACGGCGCCAACCCGTTTGAGAGCGAGCTGGCCAAGTTGACGC
GCCCGTTGCTGGTTCCCGGGCTGCCGCTGGCGGAGCGTGCGTTGATGACGCCCGGCGACCTTGGC
TCGTTGCTGGAGGCGCAGGAGGTGCTCAACACCGAGGACTACATCCTGTTCAAGTTGGGCCTGGT
GGGGGTGGACGACGACGAGGAGGAGGAACAGTATCCGTTGACGCTCCGCGGCACGTCGGTGCCGC
CGGACTCGGACTAATTATAGTACAGTACGTATCTAGAAAAGTAAGTATGTTTTAGGCGGTAGACG
TGGGTGGTAGACGTGGGTGGTAGACGTGGGTGATGGCGGCTGGGGTGACGCTGGAGCGACAAGAA
GTAGGCTCGTTAATTGGTTTGGTGTTTCTCTGTGTTCGATTTTTG
Right flanking sequence: Indices 317898 -- 318397
GTGCTTATGCAAGGGCCCCGTGGGGAAAGAAGGTACCGTTTGAGGCGGGAAAAGCTGGAAGACCA
CTTGGCAACGGGCCCTCGTTTTGATCGCGTGTGTCACCAACCGGGCTCGGCTGCTCGGCTTCGGC
GATGAGGTTTAATCGGCCAGTTGCACGCTATGTTCCCGTTCCCATGCATAAAAAATACTCGTGTA
TGACTTAATGGGATACGAGTCGAACAAATTGGGACGCCTGTCCCCGCCACGGGGCAGTGTTGTGG
CTGAAACGGCGACAGGCAACCATACCTGGTGTCTACTGGCACACCAAATGGTGACTACTCTCGTA
CCTCGCTAGTCTCGTATACGTACGTGACTCGCTATTGTTCTTACGAGCAGGCTCCGGCCACCAAA
ACGAGCCCTCGTGTTTGAGGTCACTGGAGACTTCGTATCCGACGCGTTTTGTGACCCACCCCTGG
GTATAAAGCCCCGGCGGGGCCAGCTAACTCTCAAATGCAATCTAC
Found at i:319234 original size:48 final size:48
Alignment explanation
Indices: 319140--319238 Score: 126
Period size: 48 Copynumber: 2.1 Consensus size: 48
319130 GGACTCTGAA
* * ** **
319140 GACGACTCCTCTGCCTCCGAAACCAAGGGTTCTGGGGCTACCGGTGCT
1 GACGACTCCTCTGCCACCGAAACCAAGGGCTCTGACGAGACCGGTGCT
* *
319188 GACGACTCCTCTGCCACCGAATCCAAGGGCTCTGACGAGACTGGTGCT
1 GACGACTCCTCTGCCACCGAAACCAAGGGCTCTGACGAGACCGGTGCT
319236 GAC
1 GAC
319239 TCTGAGTCTG
Statistics
Matches: 43, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
48 43 1.00
ACGTcount: A:0.19, C:0.33, G:0.28, T:0.19
Consensus pattern (48 bp):
GACGACTCCTCTGCCACCGAAACCAAGGGCTCTGACGAGACCGGTGCT
Left flanking sequence: Indices 318640 -- 319139
CCAACCTCTACTCGAAGTTTGACGGGAAGATCCCGGCTGCTTCCTATGCGTCCGACGCCTTGGCT
GCCAACGCTGACGAGCTCAGTGGGATTGCGGCTGAGGTGTCTGATGGGCTTGGCTTCGCTACTGG
TGACGACTACGTCTACACTGCTGAGCCCAAGGATGTGCTTGCTGCGCTCACCATTGGTTCTTACG
GTAAGGACGAGCAGCAGGCGGTGTCTTCCTTCTACAACGCTTACCTGTCGTTGTACAAGCAGCAC
TCCGGGAGCGTTCACTTGACTGCTCTCATCAATGAAGGTGGGATGGGTGCTCTTGGTGGTGCCTT
GGCCGGTGGTGTCGCTGGTGCTGGTGCCGTCGCTGGGGCCGCTGGTGCTGCTGCGACCGGCTCGG
GCGACGACAACTCGGAGGCTACCGAGACCGGGGCTGACTCAGAGGCCTCGGAGACCGGTGACGCC
AATGAGAGTGAGTCTCAGGAAGCCACTGGCTCGGAGGACTCTGAA
Right flanking sequence: Indices 319239 -- 319738
TCTGAGTCTGCCACCGAGGCCGCTGCCACCGGCAAGGACTCTGACAAGCTGTCCGCCCTGGGCTC
CAAGACCTCTGGTGCCTCTTCTGGTGCTCTGGCCTCTAGCAATGCGCCTTCGTCCTCGGGCAAGA
ACGCTGCTGGTGTCTTGGTTGCCCCCTTCTACGCTGTGGCTGGTTTCGGCTTGGTCAACTTGTTG
TTGTAAGTAAACCAAAATGTTAAGTACTGTTTGAGTTTAAGTCTTGAATGTAAAGCCTTTGGTAG
CCTGATTTAATTCCCTAAAACAACTTGTCGTGTAGTCCTTACGTTTTCTAGTCCCTTTGATGTCC
ATACACGTTTTTGATCACCTTACCCATGGCCCCTCCTCCGTGTCCCCTTATACCGTACAAAAACA
ACCTCGTCATCAACGGGCGTGTGGTCTAGTGGTATGATACCTCCTTAGGGTGGAGGTGGTCCGGC
GTTCAATTCGCCGCTCGCCCCGTTCTTTTTGCAGCCTGAAACACC
Found at i:321242 original size:23 final size:23
Alignment explanation
Indices: 321207--321253 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
321197 CGATCTGAGT
*
321207 AAGAAATCTACCACGGCTAAGAA
1 AAGAAATCTACCACGGCGAAGAA
*
321230 AAGAAATAC-ACCATGGCGAAGAA
1 AAGAAAT-CTACCACGGCGAAGAA
321253 A
1 A
321254 TCTACCGTGG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
23 20 0.95
24 1 0.05
ACGTcount: A:0.51, C:0.19, G:0.19, T:0.11
Consensus pattern (23 bp):
AAGAAATCTACCACGGCGAAGAA
Left flanking sequence: Indices 320707 -- 321206
TTTCTTGACGTATCGTGTCGAGTGTCGAAATAGGTGTCGAATTAGGTGTCTCAGAGACTTTCAAG
CATGAGTTTCTGCTAAAGTTGAAAATTTTGCTAATATTTCATGAACACACTCATAAACACACTTT
CTTCAAATCGTCTCAGTACAAAAGTGAGCTAATAACTCACACTAGGGTTTAACCGTGTATAAACT
CCATATACCAGGTTATGCATCTAAACAAACGGTAGCCATCTAACTATGAGGTAGTTATTAAGCTT
GTCAGACTTAGCATCAGATTCTAATGTAGTAAGCACAAATGACTGCACTTCAGTAATGAGAGTAT
CGAAGTTCAGTAAACATGTAGGCTAAATTACTAAGACATGAATGTAAACCTTAATAGGTTACGCA
ACCTGCAATCCTAGGTATTGTAACACTATATAGAATAGAATCTCCCGACTATTGCCACTATCGGG
AACTTCAATTAATTCGGTAACCGCATATTATCCTTCGATCTGAGT
Right flanking sequence: Indices 321254 -- 321753
TCTACCGTGGCTAAGAAGTCCACCGTGGCTAATAAATCCACCATGGCAGAACGACAAAATTCACC
AACGGTGCCTTTACCTCCTTTCTGATCCTGAAGTCTGGTCGCAAAACTAGCGTGGCTCCTACACC
CCTTCGACAATTGTCTATTCTAGATGCTAAAAGTTACTATTCATCATAGCCCGGACGTCTGCGCC
CGCCAGGGGGACCAAGTCGCCCCCCTCGTCGTGGTTCACCACCGGCAGCCCGATCTGGTGCTTGC
TCGCGGGCTTGTACGTGGGCTTTCGCGCAATCCCCGTGGGGTTGATCATCGCCACCAGGTTGCGC
GCCATCTGGGTCGCCGAGAGCACCGGCCCGTTGTCGGTGTCGGCCCACGGCTGCTGCATCTCCGG
GTTGGCCACCGCCACCGGCCCCTGGGCCCGCTTGGACCGCGGCACCTGGCCGAAGTCGGTGTATG
TCTGGAGCGTCAGCAGCCGGATGTCCAGCGCCGTGGGGATGGGCT
Found at i:321253 original size:18 final size:18
Alignment explanation
Indices: 321230--321300 Score: 79
Period size: 18 Copynumber: 3.9 Consensus size: 18
321220 CGGCTAAGAA
* *
321230 AAGAAATACACCATGGCG
1 AAGAAATCCACCATGGCT
* *
321248 AAGAAATCTACCGTGGCT
1 AAGAAATCCACCATGGCT
* *
321266 AAGAAGTCCACCGTGGCT
1 AAGAAATCCACCATGGCT
*
321284 AATAAATCCACCATGGC
1 AAGAAATCCACCATGGC
321301 AGAACGACAA
Statistics
Matches: 44, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
18 44 1.00
ACGTcount: A:0.37, C:0.25, G:0.21, T:0.17
Consensus pattern (18 bp):
AAGAAATCCACCATGGCT
Left flanking sequence: Indices 320730 -- 321229
GTCGAAATAGGTGTCGAATTAGGTGTCTCAGAGACTTTCAAGCATGAGTTTCTGCTAAAGTTGAA
AATTTTGCTAATATTTCATGAACACACTCATAAACACACTTTCTTCAAATCGTCTCAGTACAAAA
GTGAGCTAATAACTCACACTAGGGTTTAACCGTGTATAAACTCCATATACCAGGTTATGCATCTA
AACAAACGGTAGCCATCTAACTATGAGGTAGTTATTAAGCTTGTCAGACTTAGCATCAGATTCTA
ATGTAGTAAGCACAAATGACTGCACTTCAGTAATGAGAGTATCGAAGTTCAGTAAACATGTAGGC
TAAATTACTAAGACATGAATGTAAACCTTAATAGGTTACGCAACCTGCAATCCTAGGTATTGTAA
CACTATATAGAATAGAATCTCCCGACTATTGCCACTATCGGGAACTTCAATTAATTCGGTAACCG
CATATTATCCTTCGATCTGAGTAAGAAATCTACCACGGCTAAGAA
Right flanking sequence: Indices 321301 -- 321800
AGAACGACAAAATTCACCAACGGTGCCTTTACCTCCTTTCTGATCCTGAAGTCTGGTCGCAAAAC
TAGCGTGGCTCCTACACCCCTTCGACAATTGTCTATTCTAGATGCTAAAAGTTACTATTCATCAT
AGCCCGGACGTCTGCGCCCGCCAGGGGGACCAAGTCGCCCCCCTCGTCGTGGTTCACCACCGGCA
GCCCGATCTGGTGCTTGCTCGCGGGCTTGTACGTGGGCTTTCGCGCAATCCCCGTGGGGTTGATC
ATCGCCACCAGGTTGCGCGCCATCTGGGTCGCCGAGAGCACCGGCCCGTTGTCGGTGTCGGCCCA
CGGCTGCTGCATCTCCGGGTTGGCCACCGCCACCGGCCCCTGGGCCCGCTTGGACCGCGGCACCT
GGCCGAAGTCGGTGTATGTCTGGAGCGTCAGCAGCCGGATGTCCAGCGCCGTGGGGATGGGCTGC
GGGGTGAACTGCGGGTGGCCCTCGAACGCGGGACTCAGCAACTCG
Found at i:321908 original size:12 final size:12
Alignment explanation
Indices: 321887--321920 Score: 59
Period size: 12 Copynumber: 2.8 Consensus size: 12
321877 GGTGTTGGTT
321887 GTCAAACTGGCC
1 GTCAAACTGGCC
*
321899 GTCAACCTGGCC
1 GTCAAACTGGCC
321911 GTCAAACTGG
1 GTCAAACTGG
321921 TGCTGCCCAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.24, C:0.32, G:0.26, T:0.18
Consensus pattern (12 bp):
GTCAAACTGGCC
Left flanking sequence: Indices 321387 -- 321886
TCGACAATTGTCTATTCTAGATGCTAAAAGTTACTATTCATCATAGCCCGGACGTCTGCGCCCGC
CAGGGGGACCAAGTCGCCCCCCTCGTCGTGGTTCACCACCGGCAGCCCGATCTGGTGCTTGCTCG
CGGGCTTGTACGTGGGCTTTCGCGCAATCCCCGTGGGGTTGATCATCGCCACCAGGTTGCGCGCC
ATCTGGGTCGCCGAGAGCACCGGCCCGTTGTCGGTGTCGGCCCACGGCTGCTGCATCTCCGGGTT
GGCCACCGCCACCGGCCCCTGGGCCCGCTTGGACCGCGGCACCTGGCCGAAGTCGGTGTATGTCT
GGAGCGTCAGCAGCCGGATGTCCAGCGCCGTGGGGATGGGCTGCGGGGTGAACTGCGGGTGGCCC
TCGAACGCGGGACTCAGCAACTCGTACCCGTTGGGCGAGTACTCGACGGGCTGCCCGTTGTACGC
GGCCACCTGGGGGTCCGGATACCCGTCGAACTGCTGGTGTTGGTT
Right flanking sequence: Indices 321921 -- 322420
TGCTGCCCAAACTGGGCGTTTTGCCCGTCAAACTGGTTCTGCCCGTTAAACTCCTGGTGCTGCCC
AAACTGGTTCTGCCCGTTAAACTGGTTCAGCTCGTTAAACTCCTGGTGCTGCCCAAACTGCGCCG
TCTGCGCAGCCTGCGGCGAGTCGCCCGCGGGGTACACGCTCAGCGCCGTCGTCATGCGTTTGTCG
AGGCCCAACGCCGGCAACGGAGGCTCCGGGCTCGTGGGGTCCTTGCCCTTGTCAAAGTACACCCG
GTACACCAGCTTCATCCGCTGGATCTCCTCCTCCTGCTCGTGGGTGAGCTCCTGCTCCTCGTCGG
AGTCGTTGGCCAACAAGTTGAACAGCAGGATCCGCGGCAGCTTGCGGGGCCGCGGGAGCTCGTCG
CGAGGCTCCGCCGCCAACCCGGACTGCTCGGCCGCCGCCAGCGCGTGCCGCAAGTGCAGCAGCAC
CAGCACCGCGCGGTGCATGTTGTCGATCAGCTTCTGCAGCATCTC
Found at i:321963 original size:18 final size:18
Alignment explanation
Indices: 321942--322013 Score: 69
Period size: 18 Copynumber: 4.0 Consensus size: 18
321932 CTGGGCGTTT
321942 TGCCCGTCAAACTGGTTC
1 TGCCCGTCAAACTGGTTC
* *
321960 TGCCCGTTAAACTCCTGGTGC
1 TGCCCGTCAAA---CTGGTTC
321981 TG-CC--CAAACTGGTTC
1 TGCCCGTCAAACTGGTTC
*
321996 TGCCCGTTAAACTGGTTC
1 TGCCCGTCAAACTGGTTC
322014 AGCTCGTTAA
Statistics
Matches: 43, Mismatches: 5, Indels: 12
0.72 0.08 0.20
Matches are distributed among these distances:
15 8 0.19
16 2 0.05
18 23 0.53
20 2 0.05
21 8 0.19
ACGTcount: A:0.17, C:0.32, G:0.22, T:0.29
Consensus pattern (18 bp):
TGCCCGTCAAACTGGTTC
Left flanking sequence: Indices 321442 -- 321941
CTGCGCCCGCCAGGGGGACCAAGTCGCCCCCCTCGTCGTGGTTCACCACCGGCAGCCCGATCTGG
TGCTTGCTCGCGGGCTTGTACGTGGGCTTTCGCGCAATCCCCGTGGGGTTGATCATCGCCACCAG
GTTGCGCGCCATCTGGGTCGCCGAGAGCACCGGCCCGTTGTCGGTGTCGGCCCACGGCTGCTGCA
TCTCCGGGTTGGCCACCGCCACCGGCCCCTGGGCCCGCTTGGACCGCGGCACCTGGCCGAAGTCG
GTGTATGTCTGGAGCGTCAGCAGCCGGATGTCCAGCGCCGTGGGGATGGGCTGCGGGGTGAACTG
CGGGTGGCCCTCGAACGCGGGACTCAGCAACTCGTACCCGTTGGGCGAGTACTCGACGGGCTGCC
CGTTGTACGCGGCCACCTGGGGGTCCGGATACCCGTCGAACTGCTGGTGTTGGTTGTCAAACTGG
CCGTCAACCTGGCCGTCAAACTGGTGCTGCCCAAACTGGGCGTTT
Right flanking sequence: Indices 322014 -- 322513
AGCTCGTTAAACTCCTGGTGCTGCCCAAACTGCGCCGTCTGCGCAGCCTGCGGCGAGTCGCCCGC
GGGGTACACGCTCAGCGCCGTCGTCATGCGTTTGTCGAGGCCCAACGCCGGCAACGGAGGCTCCG
GGCTCGTGGGGTCCTTGCCCTTGTCAAAGTACACCCGGTACACCAGCTTCATCCGCTGGATCTCC
TCCTCCTGCTCGTGGGTGAGCTCCTGCTCCTCGTCGGAGTCGTTGGCCAACAAGTTGAACAGCAG
GATCCGCGGCAGCTTGCGGGGCCGCGGGAGCTCGTCGCGAGGCTCCGCCGCCAACCCGGACTGCT
CGGCCGCCGCCAGCGCGTGCCGCAAGTGCAGCAGCACCAGCACCGCGCGGTGCATGTTGTCGATC
AGCTTCTGCAGCATCTCGCGCAGGGCAAACTCGTCGAGCCGCAGGTCGTCGTCGGGCCGGCGCGA
GTTCTGGCGCCGCGGCGTCAGCGAGCCCAGCTCGAATGTGAAGTG
Found at i:322008 original size:54 final size:55
Alignment explanation
Indices: 321917--322047 Score: 201
Period size: 54 Copynumber: 2.4 Consensus size: 55
321907 GGCCGTCAAA
* *
321917 CTGGTGCTGCCCAAACTGGGCGTTTTGCCCGTCAAACTGGTTCTGCCCGTTAAACTC
1 CTGGTGCTGCCCAAACT--GCGTTCTGCCCGTCAAACTGGTTCAGCCCGTTAAACTC
* *
321974 CTGGTGCTGCCCAAACTG-GTTCTGCCCGTTAAACTGGTTCAGCTCGTTAAACTC
1 CTGGTGCTGCCCAAACTGCGTTCTGCCCGTCAAACTGGTTCAGCCCGTTAAACTC
322028 CTGGTGCTGCCCAAACTGCG
1 CTGGTGCTGCCCAAACTGCG
322048 CCGTCTGCGC
Statistics
Matches: 69, Mismatches: 4, Indels: 4
0.90 0.05 0.05
Matches are distributed among these distances:
54 50 0.72
55 2 0.03
57 17 0.25
ACGTcount: A:0.17, C:0.31, G:0.24, T:0.27
Consensus pattern (55 bp):
CTGGTGCTGCCCAAACTGCGTTCTGCCCGTCAAACTGGTTCAGCCCGTTAAACTC
Left flanking sequence: Indices 321417 -- 321916
TTACTATTCATCATAGCCCGGACGTCTGCGCCCGCCAGGGGGACCAAGTCGCCCCCCTCGTCGTG
GTTCACCACCGGCAGCCCGATCTGGTGCTTGCTCGCGGGCTTGTACGTGGGCTTTCGCGCAATCC
CCGTGGGGTTGATCATCGCCACCAGGTTGCGCGCCATCTGGGTCGCCGAGAGCACCGGCCCGTTG
TCGGTGTCGGCCCACGGCTGCTGCATCTCCGGGTTGGCCACCGCCACCGGCCCCTGGGCCCGCTT
GGACCGCGGCACCTGGCCGAAGTCGGTGTATGTCTGGAGCGTCAGCAGCCGGATGTCCAGCGCCG
TGGGGATGGGCTGCGGGGTGAACTGCGGGTGGCCCTCGAACGCGGGACTCAGCAACTCGTACCCG
TTGGGCGAGTACTCGACGGGCTGCCCGTTGTACGCGGCCACCTGGGGGTCCGGATACCCGTCGAA
CTGCTGGTGTTGGTTGTCAAACTGGCCGTCAACCTGGCCGTCAAA
Right flanking sequence: Indices 322048 -- 322547
CCGTCTGCGCAGCCTGCGGCGAGTCGCCCGCGGGGTACACGCTCAGCGCCGTCGTCATGCGTTTG
TCGAGGCCCAACGCCGGCAACGGAGGCTCCGGGCTCGTGGGGTCCTTGCCCTTGTCAAAGTACAC
CCGGTACACCAGCTTCATCCGCTGGATCTCCTCCTCCTGCTCGTGGGTGAGCTCCTGCTCCTCGT
CGGAGTCGTTGGCCAACAAGTTGAACAGCAGGATCCGCGGCAGCTTGCGGGGCCGCGGGAGCTCG
TCGCGAGGCTCCGCCGCCAACCCGGACTGCTCGGCCGCCGCCAGCGCGTGCCGCAAGTGCAGCAG
CACCAGCACCGCGCGGTGCATGTTGTCGATCAGCTTCTGCAGCATCTCGCGCAGGGCAAACTCGT
CGAGCCGCAGGTCGTCGTCGGGCCGGCGCGAGTTCTGGCGCCGCGGCGTCAGCGAGCCCAGCTCG
AATGTGAAGTGGCTGACATCGTCGTCGTCGTCGTCGTCGTCGGTG
Found at i:322021 original size:18 final size:18
Alignment explanation
Indices: 321943--322026 Score: 66
Period size: 18 Copynumber: 4.7 Consensus size: 18
321933 TGGGCGTTTT
* *
321943 GCCCGTCAAACTGGTTCT
1 GCCCGTTAAACTGGTTCA
* *
321961 GCCCGTTAAACTCCTGGTGCT
1 GCCCGTTAAA---CTGGTTCA
*
321982 GCCC---AAACTGGTTCT
1 GCCCGTTAAACTGGTTCA
321997 GCCCGTTAAACTGGTTCA
1 GCCCGTTAAACTGGTTCA
*
322015 GCTCGTTAAACT
1 GCCCGTTAAACT
322027 CCTGGTGCTG
Statistics
Matches: 55, Mismatches: 5, Indels: 12
0.76 0.07 0.17
Matches are distributed among these distances:
15 11 0.20
18 33 0.60
21 11 0.20
ACGTcount: A:0.19, C:0.31, G:0.21, T:0.29
Consensus pattern (18 bp):
GCCCGTTAAACTGGTTCA
Left flanking sequence: Indices 321443 -- 321942
TGCGCCCGCCAGGGGGACCAAGTCGCCCCCCTCGTCGTGGTTCACCACCGGCAGCCCGATCTGGT
GCTTGCTCGCGGGCTTGTACGTGGGCTTTCGCGCAATCCCCGTGGGGTTGATCATCGCCACCAGG
TTGCGCGCCATCTGGGTCGCCGAGAGCACCGGCCCGTTGTCGGTGTCGGCCCACGGCTGCTGCAT
CTCCGGGTTGGCCACCGCCACCGGCCCCTGGGCCCGCTTGGACCGCGGCACCTGGCCGAAGTCGG
TGTATGTCTGGAGCGTCAGCAGCCGGATGTCCAGCGCCGTGGGGATGGGCTGCGGGGTGAACTGC
GGGTGGCCCTCGAACGCGGGACTCAGCAACTCGTACCCGTTGGGCGAGTACTCGACGGGCTGCCC
GTTGTACGCGGCCACCTGGGGGTCCGGATACCCGTCGAACTGCTGGTGTTGGTTGTCAAACTGGC
CGTCAACCTGGCCGTCAAACTGGTGCTGCCCAAACTGGGCGTTTT
Right flanking sequence: Indices 322027 -- 322526
CCTGGTGCTGCCCAAACTGCGCCGTCTGCGCAGCCTGCGGCGAGTCGCCCGCGGGGTACACGCTC
AGCGCCGTCGTCATGCGTTTGTCGAGGCCCAACGCCGGCAACGGAGGCTCCGGGCTCGTGGGGTC
CTTGCCCTTGTCAAAGTACACCCGGTACACCAGCTTCATCCGCTGGATCTCCTCCTCCTGCTCGT
GGGTGAGCTCCTGCTCCTCGTCGGAGTCGTTGGCCAACAAGTTGAACAGCAGGATCCGCGGCAGC
TTGCGGGGCCGCGGGAGCTCGTCGCGAGGCTCCGCCGCCAACCCGGACTGCTCGGCCGCCGCCAG
CGCGTGCCGCAAGTGCAGCAGCACCAGCACCGCGCGGTGCATGTTGTCGATCAGCTTCTGCAGCA
TCTCGCGCAGGGCAAACTCGTCGAGCCGCAGGTCGTCGTCGGGCCGGCGCGAGTTCTGGCGCCGC
GGCGTCAGCGAGCCCAGCTCGAATGTGAAGTGGCTGACATCGTCG
Found at i:323396 original size:20 final size:21
Alignment explanation
Indices: 323373--323415 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 21
323363 CTAACTGGTC
*
323373 AAGT-TAGCGGGAAACAGTGG
1 AAGTCTAGCGGAAAACAGTGG
* *
323393 AAGTCTGGTGGAAAACAGTGG
1 AAGTCTAGCGGAAAACAGTGG
323414 AA
1 AA
323416 ACTAGTCAGA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
20 4 0.21
21 15 0.79
ACGTcount: A:0.37, C:0.09, G:0.37, T:0.16
Consensus pattern (21 bp):
AAGTCTAGCGGAAAACAGTGG
Left flanking sequence: Indices 322873 -- 323372
CCATCGGGAGGAACAGCTGGAGCGGGTCGCTGGTGGTGACCGACCCCGCCAGCTGGTTGTGTTGC
GGGTGGTGGTACATGGCCGCGGGCTTTTCCATCTCGCCCGACGAGTGGGACCCGTGGTCGAACGG
GTTGGGCCCCTGGCCGGCGTAGGCCTTGGCGTACTCGGGCACCCCGTAGCCCTTGTAGTCGGGCA
ACGCGGTGACGTCGCCCGTCTCGTCAAAGTCCGGGTCGTGCTCCAGCATCTCTTTCTTGTCCTTG
CGGTAGTTGCGCCACAAAAAGAACCCGAGCACCATGCAGATGACCACCACCGGCACACACACCGA
CACCGCGATGGTGGCGGCGTTGTCGTGCACGGGGGTTTCGCAGTCGGGGGTGTTGGGGTGCTTTT
TGCACTCGTCGGCGTCCAGGGCCCGTTTTATCAATGAGATGAACATGGTGGGGGTTATTGGGTTG
AAGCGGGAAAGTGCTTTCTGGGAACTGGTTAACTGCTAACTGGTC
Right flanking sequence: Indices 323416 -- 323915
ACTAGTCAGAAACCGTGTGGAAACTAGTCAAAAACCGTGGATTCTCGTCAAAAAAACCTGTCAAA
AAGAACCAGGTTAAATTCGCCAGAAGGTTTAAAAGAGCCTAACGAAAAACAGCCAAAAACAGTCA
AAAACGACCAAAAAGTAAATCAGCCAAAAACAGTCAAAAACGACCAAAAAGTAAATCAGCCAAAA
ACAGCCAAAAGGTGAAAAAAGCCAAAAATCAGTCAAAAATTCAGCTAGAACACCAAGAGGTTAAC
AGCAGAGCCACGGGATGTAACCAGATGGTCTCAGCGAGTGTGAAAGCCGGTTTCGGGGAACTAAA
ATAGCTAGCCAACAGGTGGTAGCTAGGGTCTGGACGGTTTGTAAAACGCCGAGCGCCAGTCCAGG
TCAAAAACAGCTCTTGCGAGGTAGAAAAGCAAATAAACAAACACGGGGCAGTCTCTGGGACGCGG
GTTTGCTTGTGGTGTGGCTTTCAGGGGGTTAAAGGCGCGAGGTCT
Found at i:323436 original size:22 final size:22
Alignment explanation
Indices: 323410--323454 Score: 81
Period size: 22 Copynumber: 2.0 Consensus size: 22
323400 GTGGAAAACA
*
323410 GTGGAAACTAGTCAGAAACCGT
1 GTGGAAACTAGTCAAAAACCGT
323432 GTGGAAACTAGTCAAAAACCGT
1 GTGGAAACTAGTCAAAAACCGT
323454 G
1 G
323455 GATTCTCGTC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.38, C:0.18, G:0.27, T:0.18
Consensus pattern (22 bp):
GTGGAAACTAGTCAAAAACCGT
Left flanking sequence: Indices 322910 -- 323409
GACCGACCCCGCCAGCTGGTTGTGTTGCGGGTGGTGGTACATGGCCGCGGGCTTTTCCATCTCGC
CCGACGAGTGGGACCCGTGGTCGAACGGGTTGGGCCCCTGGCCGGCGTAGGCCTTGGCGTACTCG
GGCACCCCGTAGCCCTTGTAGTCGGGCAACGCGGTGACGTCGCCCGTCTCGTCAAAGTCCGGGTC
GTGCTCCAGCATCTCTTTCTTGTCCTTGCGGTAGTTGCGCCACAAAAAGAACCCGAGCACCATGC
AGATGACCACCACCGGCACACACACCGACACCGCGATGGTGGCGGCGTTGTCGTGCACGGGGGTT
TCGCAGTCGGGGGTGTTGGGGTGCTTTTTGCACTCGTCGGCGTCCAGGGCCCGTTTTATCAATGA
GATGAACATGGTGGGGGTTATTGGGTTGAAGCGGGAAAGTGCTTTCTGGGAACTGGTTAACTGCT
AACTGGTCAAGTTAGCGGGAAACAGTGGAAGTCTGGTGGAAAACA
Right flanking sequence: Indices 323455 -- 323954
GATTCTCGTCAAAAAAACCTGTCAAAAAGAACCAGGTTAAATTCGCCAGAAGGTTTAAAAGAGCC
TAACGAAAAACAGCCAAAAACAGTCAAAAACGACCAAAAAGTAAATCAGCCAAAAACAGTCAAAA
ACGACCAAAAAGTAAATCAGCCAAAAACAGCCAAAAGGTGAAAAAAGCCAAAAATCAGTCAAAAA
TTCAGCTAGAACACCAAGAGGTTAACAGCAGAGCCACGGGATGTAACCAGATGGTCTCAGCGAGT
GTGAAAGCCGGTTTCGGGGAACTAAAATAGCTAGCCAACAGGTGGTAGCTAGGGTCTGGACGGTT
TGTAAAACGCCGAGCGCCAGTCCAGGTCAAAAACAGCTCTTGCGAGGTAGAAAAGCAAATAAACA
AACACGGGGCAGTCTCTGGGACGCGGGTTTGCTTGTGGTGTGGCTTTCAGGGGGTTAAAGGCGCG
AGGTCTAGCGTCTTGTTCCAAGCAGCGGACAGTCGCAGGAGCAAC
Found at i:323548 original size:9 final size:10
Alignment explanation
Indices: 323525--323620 Score: 50
Period size: 10 Copynumber: 10.4 Consensus size: 10
323515 GAGCCTAACG
323525 AAAAACAGCC
1 AAAAACAGCC
*
323535 AAAAACAGTC
1 AAAAACAGCC
323545 AAAAAC-GACC
1 AAAAACAG-CC
323555 -AAAA-AG--
1 AAAAACAGCC
* *
323561 TAAATCAGCC
1 AAAAACAGCC
*
323571 AAAAACAGTC
1 AAAAACAGCC
323581 AAAAAC-GACC
1 AAAAACAG-CC
323591 -AAAA-AG--
1 AAAAACAGCC
* *
323597 TAAATCAGCC
1 AAAAACAGCC
323607 AAAAACAGCC
1 AAAAACAGCC
323617 AAAA
1 AAAA
323621 GGTGAAAAAA
Statistics
Matches: 64, Mismatches: 10, Indels: 24
0.65 0.10 0.24
Matches are distributed among these distances:
7 6 0.09
8 4 0.06
9 12 0.19
10 42 0.66
ACGTcount: A:0.60, C:0.23, G:0.10, T:0.06
Consensus pattern (10 bp):
AAAAACAGCC
Left flanking sequence: Indices 323025 -- 323524
GCCTTGGCGTACTCGGGCACCCCGTAGCCCTTGTAGTCGGGCAACGCGGTGACGTCGCCCGTCTC
GTCAAAGTCCGGGTCGTGCTCCAGCATCTCTTTCTTGTCCTTGCGGTAGTTGCGCCACAAAAAGA
ACCCGAGCACCATGCAGATGACCACCACCGGCACACACACCGACACCGCGATGGTGGCGGCGTTG
TCGTGCACGGGGGTTTCGCAGTCGGGGGTGTTGGGGTGCTTTTTGCACTCGTCGGCGTCCAGGGC
CCGTTTTATCAATGAGATGAACATGGTGGGGGTTATTGGGTTGAAGCGGGAAAGTGCTTTCTGGG
AACTGGTTAACTGCTAACTGGTCAAGTTAGCGGGAAACAGTGGAAGTCTGGTGGAAAACAGTGGA
AACTAGTCAGAAACCGTGTGGAAACTAGTCAAAAACCGTGGATTCTCGTCAAAAAAACCTGTCAA
AAAGAACCAGGTTAAATTCGCCAGAAGGTTTAAAAGAGCCTAACG
Right flanking sequence: Indices 323621 -- 324120
GGTGAAAAAAGCCAAAAATCAGTCAAAAATTCAGCTAGAACACCAAGAGGTTAACAGCAGAGCCA
CGGGATGTAACCAGATGGTCTCAGCGAGTGTGAAAGCCGGTTTCGGGGAACTAAAATAGCTAGCC
AACAGGTGGTAGCTAGGGTCTGGACGGTTTGTAAAACGCCGAGCGCCAGTCCAGGTCAAAAACAG
CTCTTGCGAGGTAGAAAAGCAAATAAACAAACACGGGGCAGTCTCTGGGACGCGGGTTTGCTTGT
GGTGTGGCTTTCAGGGGGTTAAAGGCGCGAGGTCTAGCGTCTTGTTCCAAGCAGCGGACAGTCGC
AGGAGCAACTAATAAACGAAGGTGGGAGGGTCGGGGGGGTCGCTGGTGCGTATGTGGACGTCAAG
AGTCGGGGCCTGGTCGAGCGGGAGCGTCCGGACGGCGGTTTTGTAGGCGGGAAGGGCTGAAGAGC
TAAAGAAAAAACTGACGTGCTCTAGATCGCGATTGCCTGCGATCA
Found at i:323577 original size:36 final size:36
Alignment explanation
Indices: 323530--323620 Score: 173
Period size: 36 Copynumber: 2.5 Consensus size: 36
323520 TAACGAAAAA
323530 CAGCCAAAAACAGTCAAAAACGACCAAAAAGTAAAT
1 CAGCCAAAAACAGTCAAAAACGACCAAAAAGTAAAT
323566 CAGCCAAAAACAGTCAAAAACGACCAAAAAGTAAAT
1 CAGCCAAAAACAGTCAAAAACGACCAAAAAGTAAAT
*
323602 CAGCCAAAAACAGCCAAAA
1 CAGCCAAAAACAGTCAAAA
323621 GGTGAAAAAA
Statistics
Matches: 54, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
36 54 1.00
ACGTcount: A:0.58, C:0.24, G:0.11, T:0.07
Consensus pattern (36 bp):
CAGCCAAAAACAGTCAAAAACGACCAAAAAGTAAAT
Left flanking sequence: Indices 323030 -- 323529
GGCGTACTCGGGCACCCCGTAGCCCTTGTAGTCGGGCAACGCGGTGACGTCGCCCGTCTCGTCAA
AGTCCGGGTCGTGCTCCAGCATCTCTTTCTTGTCCTTGCGGTAGTTGCGCCACAAAAAGAACCCG
AGCACCATGCAGATGACCACCACCGGCACACACACCGACACCGCGATGGTGGCGGCGTTGTCGTG
CACGGGGGTTTCGCAGTCGGGGGTGTTGGGGTGCTTTTTGCACTCGTCGGCGTCCAGGGCCCGTT
TTATCAATGAGATGAACATGGTGGGGGTTATTGGGTTGAAGCGGGAAAGTGCTTTCTGGGAACTG
GTTAACTGCTAACTGGTCAAGTTAGCGGGAAACAGTGGAAGTCTGGTGGAAAACAGTGGAAACTA
GTCAGAAACCGTGTGGAAACTAGTCAAAAACCGTGGATTCTCGTCAAAAAAACCTGTCAAAAAGA
ACCAGGTTAAATTCGCCAGAAGGTTTAAAAGAGCCTAACGAAAAA
Right flanking sequence: Indices 323621 -- 324120
GGTGAAAAAAGCCAAAAATCAGTCAAAAATTCAGCTAGAACACCAAGAGGTTAACAGCAGAGCCA
CGGGATGTAACCAGATGGTCTCAGCGAGTGTGAAAGCCGGTTTCGGGGAACTAAAATAGCTAGCC
AACAGGTGGTAGCTAGGGTCTGGACGGTTTGTAAAACGCCGAGCGCCAGTCCAGGTCAAAAACAG
CTCTTGCGAGGTAGAAAAGCAAATAAACAAACACGGGGCAGTCTCTGGGACGCGGGTTTGCTTGT
GGTGTGGCTTTCAGGGGGTTAAAGGCGCGAGGTCTAGCGTCTTGTTCCAAGCAGCGGACAGTCGC
AGGAGCAACTAATAAACGAAGGTGGGAGGGTCGGGGGGGTCGCTGGTGCGTATGTGGACGTCAAG
AGTCGGGGCCTGGTCGAGCGGGAGCGTCCGGACGGCGGTTTTGTAGGCGGGAAGGGCTGAAGAGC
TAAAGAAAAAACTGACGTGCTCTAGATCGCGATTGCCTGCGATCA
Found at i:324842 original size:12 final size:13
Alignment explanation
Indices: 324825--324857 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
324815 AAGGGGTGAT
324825 GGGGTGGT-AATA
1 GGGGTGGTAAATA
*
324837 GGGGTGGTAAATG
1 GGGGTGGTAAATA
324850 GGGGTGGT
1 GGGGTGGT
324858 GGGAGACTGT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 8 0.42
13 11 0.58
ACGTcount: A:0.18, C:0.00, G:0.58, T:0.24
Consensus pattern (13 bp):
GGGGTGGTAAATA
Left flanking sequence: Indices 324325 -- 324824
CAGACGCGTACACAAATAGGGGAGGCAGGGGAGGCGGGCTAAATGCCGGTGCCTGCTTGGGCGGT
TACGTCAGAGGAGGCTGCTGGGGGTGGTGGGGCGTTCTGGGGGCGCTCCGGGGGGCGGACCACCT
GATCCATCGCAAATTCCCACCTGAGACACTGAAATTCCGCGCGTCTTGGCTCTGCTTACTCCAGG
GCTTGACCGTGGGCTTATGCAAATGCCGTCCCATGCCTGCATGATTCAGAAAATTTAGCTATTTA
ACTGTGGTGTGTGCACACCGCGGCCCGAATGGGGTTAAATTGGAGTAGGGGTTGCGGAGGCAGTT
GGCAATGGCAGGGGACAGGGGCTACATTCCGAGGTGGGTGCGGGCAACCGGTGGTGGTGGTGAAT
TGCTCGTATCGCCCGCGTATCGCACGCGTATCGGGAGACGCGAGACCACGCGTAGCCTGATCAAA
GGGGCTGGTTGATAGGTGGAAGCGAGAGTGCAGGGAAGGGGTGAT
Right flanking sequence: Indices 324858 -- 325357
GGGAGACTGTGGAGGTGGTTGTAGAGGGGTGGGACGGGGAGTCCCGTAGTTGCAATAGGGGTTTG
TTTGTTTGTTTGTGTAGATTACGAGTTTACGAGTGAATGGCTCGGGCATTTGGCTAATGGCGGCT
AAAGTGGCTTGGGACACTAGTGACCGATGGCACAAAGCAGACGCGGTTTTGTGGTGAGCGATAGC
TCGCATGACAGACAGCGAACGGGTGAGTGGGGGGATGGGGGGGATGAGTGAGGGGGATGGGGTGA
TGGGGGATGAGGTGATGAAGGGATTGGCGAGATTGGCGGATTAGCAGGAGGGACATGTACGTGGT
TTACGATGGTAGAGGTGTCTTACGGGACTAGTAGGGGAAGTTGAGTTAGGTATATTGTGATGTTC
AAGGAGGTTGAGTTAGCTTTGTTTTGAAGTCCGAGACCCCAGGAGTGACTTTTGTTTGTTTTTAG
TTAGGGCTCCGTCATTTTCTTGCGTATAGATATGTGGTGGTATTG
Found at i:325122 original size:15 final size:15
Alignment explanation
Indices: 325091--325134 Score: 56
Period size: 15 Copynumber: 3.1 Consensus size: 15
325081 GGGGGGATGG
*
325091 GGGGGAT-GAGTGA-
1 GGGGGATGGGGTGAT
325104 GGGGGATGGGGTGAT
1 GGGGGATGGGGTGAT
*
325119 GGGGGATGAGGTGAT
1 GGGGGATGGGGTGAT
325134 G
1 G
325135 AAGGGATTGG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
13 7 0.26
14 5 0.19
15 15 0.56
ACGTcount: A:0.18, C:0.00, G:0.64, T:0.18
Consensus pattern (15 bp):
GGGGGATGGGGTGAT
Left flanking sequence: Indices 324591 -- 325090
GTGTGTGCACACCGCGGCCCGAATGGGGTTAAATTGGAGTAGGGGTTGCGGAGGCAGTTGGCAAT
GGCAGGGGACAGGGGCTACATTCCGAGGTGGGTGCGGGCAACCGGTGGTGGTGGTGAATTGCTCG
TATCGCCCGCGTATCGCACGCGTATCGGGAGACGCGAGACCACGCGTAGCCTGATCAAAGGGGCT
GGTTGATAGGTGGAAGCGAGAGTGCAGGGAAGGGGTGATGGGGTGGTAATAGGGGTGGTAAATGG
GGGTGGTGGGAGACTGTGGAGGTGGTTGTAGAGGGGTGGGACGGGGAGTCCCGTAGTTGCAATAG
GGGTTTGTTTGTTTGTTTGTGTAGATTACGAGTTTACGAGTGAATGGCTCGGGCATTTGGCTAAT
GGCGGCTAAAGTGGCTTGGGACACTAGTGACCGATGGCACAAAGCAGACGCGGTTTTGTGGTGAG
CGATAGCTCGCATGACAGACAGCGAACGGGTGAGTGGGGGGATGG
Right flanking sequence: Indices 325135 -- 325634
AAGGGATTGGCGAGATTGGCGGATTAGCAGGAGGGACATGTACGTGGTTTACGATGGTAGAGGTG
TCTTACGGGACTAGTAGGGGAAGTTGAGTTAGGTATATTGTGATGTTCAAGGAGGTTGAGTTAGC
TTTGTTTTGAAGTCCGAGACCCCAGGAGTGACTTTTGTTTGTTTTTAGTTAGGGCTCCGTCATTT
TCTTGCGTATAGATATGTGGTGGTATTGTTTACCTGGTAGTTTGCAACCGTGTTTATATGCAGGC
CACCAACATAAGGGAAAGATGGTCCCAACGTATGGCCCATTGGAGGGTTCTACAGTGAAATCAAG
TGTGTGAAACTTTTGGTTTGCCTACCATAAACCTCTCTATTGCTTTATTTCCTTTGTTATAGCTT
TCATTTTTGAGTTCTTTTCACCATCAACAAGTACTAATCTCGCTAAGGACCACACAACCAAACAA
ACACCTAGACCCATCAAAAAACCCCAAATCCCCACTCTAAACACC
Found at i:325710 original size:19 final size:19
Alignment explanation
Indices: 325657--325710 Score: 54
Period size: 21 Copynumber: 2.7 Consensus size: 19
325647 TGAGGCCCTA
* *
325657 CCCACCCATTGTCCACCTC
1 CCCACCCTTTGTCCACCCC
* *
325676 CCCATACCTATCGTCCACCCC
1 CCCA-CCCT-TTGTCCACCCC
325697 CCCACCCTTTGTCC
1 CCCACCCTTTGTCC
325711 CCACCCATTC
Statistics
Matches: 27, Mismatches: 6, Indels: 4
0.73 0.16 0.11
Matches are distributed among these distances:
19 9 0.33
20 5 0.19
21 13 0.48
ACGTcount: A:0.15, C:0.57, G:0.06, T:0.22
Consensus pattern (19 bp):
CCCACCCTTTGTCCACCCC
Left flanking sequence: Indices 325157 -- 325656
ATTAGCAGGAGGGACATGTACGTGGTTTACGATGGTAGAGGTGTCTTACGGGACTAGTAGGGGAA
GTTGAGTTAGGTATATTGTGATGTTCAAGGAGGTTGAGTTAGCTTTGTTTTGAAGTCCGAGACCC
CAGGAGTGACTTTTGTTTGTTTTTAGTTAGGGCTCCGTCATTTTCTTGCGTATAGATATGTGGTG
GTATTGTTTACCTGGTAGTTTGCAACCGTGTTTATATGCAGGCCACCAACATAAGGGAAAGATGG
TCCCAACGTATGGCCCATTGGAGGGTTCTACAGTGAAATCAAGTGTGTGAAACTTTTGGTTTGCC
TACCATAAACCTCTCTATTGCTTTATTTCCTTTGTTATAGCTTTCATTTTTGAGTTCTTTTCACC
ATCAACAAGTACTAATCTCGCTAAGGACCACACAACCAAACAAACACCTAGACCCATCAAAAAAC
CCCAAATCCCCACTCTAAACACCAAGACACTACACTGAGGCCCTA
Right flanking sequence: Indices 325711 -- 326210
CCACCCATTCCTTCCACCATCACCAGAGCCGCATGAGCCGCATCAAAACATCACCATCACCAACC
CAAACCATCCACCACACCCCACCACAATGCCGCTCGCAGAAAAGTACCTGATGGATATACCGCAC
GTGACGGCGGTGGAGCTCCCCCTCCACGTCAACAACCCCGACCGGGCCGTGGACATGCTTGGCGG
ACGCAAACGGGTGGCCCAGGTGATCAACCACCGGGACAAGCTGGCCACCGCGATGAGCCACACGC
CATTGGGCAACGTGCTCGAGCTCAAGCTCCGCCCGAAAGACCCCTTCCACCACCCCGTGCAGCTG
CTGTTCCTGGGGCTCGAGAAAGTGCTCCTCAAGGTGTCGGTGCCCAAGTCGCAGTTGCCCGAGAA
CTACAAGGACAAACCGCTAGCAGAGGTGCTTGCGGGCACCCGGTACAAGGTCCAGCCGGTGGCCA
TTGTCGACAAGACCTACAGCTTCAAGCTGATTGCCGACTTCCAGG
Found at i:327326 original size:12 final size:12
Alignment explanation
Indices: 327311--327336 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
327301 CGAGGACAAG
327311 GACGAGGAGGAC
1 GACGAGGAGGAC
327323 GACGAGGAGGAC
1 GACGAGGAGGAC
327335 GA
1 GA
327337 GGTGATCGAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.35, C:0.15, G:0.50, T:0.00
Consensus pattern (12 bp):
GACGAGGAGGAC
Left flanking sequence: Indices 326811 -- 327310
TGGACGTCAAGTTCTGGAAGTACCAGACCGAGTACTTCCGGGTGACCGACTTGCGGCTGGCGGTG
GCTCGCGAGCACAAGAAGAACACCTACGCGCTGGTGACGCGGGCAGTGCCCCAGCTGGTCGACGA
CCGCGCCAAGGCCGAGCAGATGAAGCTCAAGGTGGTGACGCTGTTGGTGTTCACGGGCGAAATGC
TCCCCACCACCGTCACCTTCCAGTTGGGGGACATCACCGATCCCGACATCACCAGCATCTTGACG
GACGCAGTGCGGCTGCTGGGGTTCCGCGACCAGCCCGATGCCCAGGACGGGTGGCTTTCGCGGCA
GACGATGGAGGTGGTGCGGCGGATAGCGCGCTACAAGTTGAGCCGGTTGGTGAAGGAGGAGGCCA
TCAGCCAGGACAAGATCTACAACATCACCCGAGGCGACTATACCGGGTTGGTGGGGGCCACCGGC
GACGACGACGCCACCATCGATCCCGAGCTCGAGGGCGAGGACAAG
Right flanking sequence: Indices 327337 -- 327836
GGTGATCGACGCCAAGACGGCCGACCTCGACGAGGAGGACGTGTTGGCGCGGGTGGACCGCATGG
TGGGCACCAAGGCCGGCGAGCAGTTGCGCGGGCTCACGGGGTTTATCAAGCAGGACGACGTAGCG
TTGATGTAATGTATTAATGATTAGATGGTAGGGTTGGATGAGAGAGCGGAAGGGGAGGGTTGGTG
AAGAGTAACTACTTGGAATTTGCAGTGTGAGGTATTGGTAGATTGAGGTAATGATGTTTTGAGGC
TTTATTGGTAGTTTGAGGCTTTATTGGCAGTTTGACGCTTTACTGGCACTTTGAGTCTTTATAAG
TAGTTTGAGGCTTTATAGGCAGTTTGAGGTATTGGTAGTTTGAGGCTTTACATGCAGTTTGAGGC
TTTATTGGTTGGTCTTTTTGTTAAGACCTATGGTTGCAAACGAGATTCGAGCACTTTTGTGGATT
ACACACTCAAATTACGAATTGGATAGATGACGAAGATACCGTTCA
Found at i:327613 original size:19 final size:19
Alignment explanation
Indices: 327589--327734 Score: 156
Period size: 19 Copynumber: 7.8 Consensus size: 19
327579 GTAATGATGT
*
327589 TTTGAGGCTTTATTGGTAG
1 TTTGAGGCTTTATTGGCAG
327608 TTTGAGGCTTTATTGGCAG
1 TTTGAGGCTTTATTGGCAG
* * *
327627 TTTGACGCTTTACTGGCAC
1 TTTGAGGCTTTATTGGCAG
* ** *
327646 TTTGAGTCTTTATAAGTAG
1 TTTGAGGCTTTATTGGCAG
*
327665 TTTGAGGCTTTATAGGCAG
1 TTTGAGGCTTTATTGGCAG
*
327684 TTTGAGG---TATTGGTAG
1 TTTGAGGCTTTATTGGCAG
*
327700 TTTGAGGCTTTACAT-GCAG
1 TTTGAGGCTTTA-TTGGCAG
327719 TTTGAGGCTTTATTGG
1 TTTGAGGCTTTATTGG
327735 TTGGTCTTTT
Statistics
Matches: 103, Mismatches: 19, Indels: 10
0.78 0.14 0.08
Matches are distributed among these distances:
16 14 0.14
18 1 0.01
19 87 0.84
20 1 0.01
ACGTcount: A:0.18, C:0.10, G:0.29, T:0.42
Consensus pattern (19 bp):
TTTGAGGCTTTATTGGCAG
Left flanking sequence: Indices 327089 -- 327588
GGGTTCCGCGACCAGCCCGATGCCCAGGACGGGTGGCTTTCGCGGCAGACGATGGAGGTGGTGCG
GCGGATAGCGCGCTACAAGTTGAGCCGGTTGGTGAAGGAGGAGGCCATCAGCCAGGACAAGATCT
ACAACATCACCCGAGGCGACTATACCGGGTTGGTGGGGGCCACCGGCGACGACGACGCCACCATC
GATCCCGAGCTCGAGGGCGAGGACAAGGACGAGGAGGACGACGAGGAGGACGAGGTGATCGACGC
CAAGACGGCCGACCTCGACGAGGAGGACGTGTTGGCGCGGGTGGACCGCATGGTGGGCACCAAGG
CCGGCGAGCAGTTGCGCGGGCTCACGGGGTTTATCAAGCAGGACGACGTAGCGTTGATGTAATGT
ATTAATGATTAGATGGTAGGGTTGGATGAGAGAGCGGAAGGGGAGGGTTGGTGAAGAGTAACTAC
TTGGAATTTGCAGTGTGAGGTATTGGTAGATTGAGGTAATGATGT
Right flanking sequence: Indices 327735 -- 328234
TTGGTCTTTTTGTTAAGACCTATGGTTGCAAACGAGATTCGAGCACTTTTGTGGATTACACACTC
AAATTACGAATTGGATAGATGACGAAGATACCGTTCAGCTCAGTGGATTAGCGGATCAGCACAGT
GCAAATACTTGACCTGATTTAGAAGATTACCATACGACTAACCAAAGCCGGTTTACACGATGGTT
ACCTCTCTCCCTCATCTGAAACCTCTCTCCCTCGTCTGGAGCCTCTCTCCCTCGTCTGGATCGAT
TACCAAACAACCGCTCGACTTGGCATCGAACGCCGCTCGCATTGTCCGCCGTCTTTTTACCGTTT
TCGTGTTCATCGCCAATCTATGCTTGTTCCAGGTGAACAATCGCGTCATTATGCGAGATGTAATT
ACCAGACGTGTCACGCGAGTCCAGGAGGACGCCGACACGGGCACCAATAATGGTGCACGTTGCGG
GTGGAATTTCACGGTACAGCCCCATTCACCACAGCTCCTCTCAAT
Done.