Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: scaffold56
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 257699
ACGTcount: A:0.22, C:0.27, G:0.28, T:0.23
File 1 of 2
Found at i:17642 original size:12 final size:12
Alignment explanation
Indices: 17625--17654 Score: 60
Period size: 12 Copynumber: 2.5 Consensus size: 12
17615 CGCTACTGGT
17625 GCTGCCCCCGCC
1 GCTGCCCCCGCC
17637 GCTGCCCCCGCC
1 GCTGCCCCCGCC
17649 GCTGCC
1 GCTGCC
17655 GAGGAGGAGG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.00, C:0.63, G:0.27, T:0.10
Consensus pattern (12 bp):
GCTGCCCCCGCC
Left flanking sequence: Indices 17125 -- 17624
TTATGTTGATTTTTTTTTCGAAGATCTATTCCAAAATGTGCGCCGCACACCGTACACAGGATATT
TCAATGGTTTATGCCACCTGAATGCCGTAAAGGGCGTTAGATGAATTCAATTTCCAAGCAACTCA
CTTATGTGTGGACTACACTGCACACGCATTGCGCTAGTGGAAGCTTTAACAGCCGTTGGTCTCGA
CTTGGATTGTGCGGCTCAGAAAGTTCGCGCGCGGACAGGTGATTGAAAATTTTTCAGTCCGTGTA
TACTCATAGCACACAATGATTAGACAAGCTCTCAAGCCCTCGGTGCGTTTGGCGCGTGGTTCCAT
GGCGAGACTCGCTGTCAGATACAATGCGACTGCTGCCGCTGAGTCTAAGGTCGACCCTAAGATTT
CGGCCATCGTTGACGACATTTCCAAGTTGACGCTTTTGGAAACTTCGTCCTTGGTCACTGAGCTC
AAGGAGCGTTTGAACATCAGCGACATCGCTTTGCCCGCTACTGGT
Right flanking sequence: Indices 17655 -- 18154
GAGGAGGAGGCCCCCAAGGAGGAGCAGGAGGAGAAGACCATCTTCGCCATCAAGTTGGAGCTGTT
CGACGCTAAGTCTAAGCCCAAGATCATCAAGGAGGTGAAGTCCTTGCTTGGCTTGTCTCTTGTCG
AGTCCAAGAAATTCGTCGAGGCTGCCCCTAAGGTGTTGAAGGACAACGTCGCTAAGGAAGACGCT
GACAAGATCAAGGCCACTTTGGAGGGCTTGGGCGCCAAGGTTGTTCTTGAATAAGTCAAGAATGC
TTCTCTTCACTCTTGTACATAAACTCGCACATACATATTAACGATTGAAATAGATTATCTGTACG
GACTCCGTGGGCTAGCGCTATATTGACGATGATGCGAAAGCGATGATGAATTGAATTGTTTCGGC
AGAGCCATAGGGCTTTCACGCGACATCTGGTGCCCGTATATACCAGTAGAATATCGCTTCAGCAC
AAAAGGATTGTCATAAGTCATTGGCGTTCTGCTTCTGGGTTCATG
Found at i:65117 original size:25 final size:24
Alignment explanation
Indices: 65074--65123 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 24
65064 AGTATCGGTG
* *
65074 GGCACGACCGGTGAGCACGTCCGAT
1 GGCACGACCGATGAACACG-CCGAT
*
65099 GGCACGTCCGATGAACACGCCGAT
1 GGCACGACCGATGAACACGCCGAT
65123 G
1 G
65124 AACACGCCGA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
24 6 0.27
25 16 0.73
ACGTcount: A:0.22, C:0.32, G:0.34, T:0.12
Consensus pattern (24 bp):
GGCACGACCGATGAACACGCCGAT
Left flanking sequence: Indices 64574 -- 65073
ATCTCAGACTCGCCCATGTCGAGTACTTCTACGGGGAGCCCATACTTGGTGGTGCCTGGCGCGCT
TCGTTTGACGCCCTGGTCGATGTAGTATTCTTTACCGAACGCCACCACCGACGTGTGGTAGATGG
CGTCGAGAGAGATGCCCAAGAGCATCGGCGCATACGTCCGCGCCATGCCATGGCTGAGATCGTAT
ACGTACACTTTGACAGATGTCATGCGGCAGGTGGCTGTGTCGGGGGCCTCCTAGGTGGGGTGATG
TAAGTGTTGGGTAGGGCAAGCAAGCGTCCGAGAGTTGGGGTCGGGTCTGCCTGTCCGGGTTATAT
AGCGATCTTTTCGCCACCAAAATATGCATGTGGCAGGGCGCCGTGGTTTGCCACCGCGATGGCGA
TCGATCAAACTGTAAACGTGCAAGGCACACGATGTGAGACGCGTTTCTGGCTACGGTTGCTACCA
AGATGCGCCCGTGGCAACAGTGCGCTCTTGGCACTAGTATCGGTG
Right flanking sequence: Indices 65124 -- 65623
AACACGCCGATAAGCCCGGGTGTCCACAAAGCGCCCCTCGCGATGGCTCTGATTTAGTGTTGTGG
CAATACGTGCTCGTGATGTCTCCCACGAGACTTGTAGTCACCTGCAACCCCAGATCGGCAAGTGT
ATGCACAGAAGGCTGTCACATCTCGACACGACAGCAGCGTGGCCATGGCGGCCACCCGCGGTTGC
GATCGGCGGCGGCCACGGTGGGCTTACGCTCGCGTGCGTCTCAAAATAGCAATCTAACCGGCGGC
CCCTGCCCCTATGTTGGTTTGCTTCATGGCGCGTGCCACGACGTTATTTGATCTTAGTAATCTTC
AGGGGAGCCGCAAGCGAATCTCGCGTGCACCACACAAAGACAGCGGTGGCGACACGAGCCCACCA
CGACTGCCACCCACTACGTAGCCACCCCCACATAAGCCCCACCACCCCTAGAGCTCGTCTACCCC
AGCTTCGTCCCGGCATTTTCCTGCCAAGTGTGGAGACGCGCGGCA
Found at i:65121 original size:12 final size:12
Alignment explanation
Indices: 65101--65134 Score: 59
Period size: 12 Copynumber: 2.8 Consensus size: 12
65091 CGTCCGATGG
65101 CACGTCCGATGAA
1 CACG-CCGATGAA
65114 CACGCCGATGAA
1 CACGCCGATGAA
65126 CACGCCGAT
1 CACGCCGAT
65135 AAGCCCGGGT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 17 0.81
13 4 0.19
ACGTcount: A:0.29, C:0.35, G:0.24, T:0.12
Consensus pattern (12 bp):
CACGCCGATGAA
Left flanking sequence: Indices 64601 -- 65100
TCTACGGGGAGCCCATACTTGGTGGTGCCTGGCGCGCTTCGTTTGACGCCCTGGTCGATGTAGTA
TTCTTTACCGAACGCCACCACCGACGTGTGGTAGATGGCGTCGAGAGAGATGCCCAAGAGCATCG
GCGCATACGTCCGCGCCATGCCATGGCTGAGATCGTATACGTACACTTTGACAGATGTCATGCGG
CAGGTGGCTGTGTCGGGGGCCTCCTAGGTGGGGTGATGTAAGTGTTGGGTAGGGCAAGCAAGCGT
CCGAGAGTTGGGGTCGGGTCTGCCTGTCCGGGTTATATAGCGATCTTTTCGCCACCAAAATATGC
ATGTGGCAGGGCGCCGTGGTTTGCCACCGCGATGGCGATCGATCAAACTGTAAACGTGCAAGGCA
CACGATGTGAGACGCGTTTCTGGCTACGGTTGCTACCAAGATGCGCCCGTGGCAACAGTGCGCTC
TTGGCACTAGTATCGGTGGGCACGACCGGTGAGCACGTCCGATGG
Right flanking sequence: Indices 65135 -- 65634
AAGCCCGGGTGTCCACAAAGCGCCCCTCGCGATGGCTCTGATTTAGTGTTGTGGCAATACGTGCT
CGTGATGTCTCCCACGAGACTTGTAGTCACCTGCAACCCCAGATCGGCAAGTGTATGCACAGAAG
GCTGTCACATCTCGACACGACAGCAGCGTGGCCATGGCGGCCACCCGCGGTTGCGATCGGCGGCG
GCCACGGTGGGCTTACGCTCGCGTGCGTCTCAAAATAGCAATCTAACCGGCGGCCCCTGCCCCTA
TGTTGGTTTGCTTCATGGCGCGTGCCACGACGTTATTTGATCTTAGTAATCTTCAGGGGAGCCGC
AAGCGAATCTCGCGTGCACCACACAAAGACAGCGGTGGCGACACGAGCCCACCACGACTGCCACC
CACTACGTAGCCACCCCCACATAAGCCCCACCACCCCTAGAGCTCGTCTACCCCAGCTTCGTCCC
GGCATTTTCCTGCCAAGTGTGGAGACGCGCGGCAAAAAAAAACCA
Found at i:69149 original size:42 final size:39
Alignment explanation
Indices: 69024--69165 Score: 164
Period size: 39 Copynumber: 3.6 Consensus size: 39
69014 GGGGAAATAC
*
69024 ACATATCTAAT--G-TATTGAGCTGGAGGGTTGTTTGGG
1 ACATATCTAATGCGTTATTGAGCTGGAGGCTTGTTTGGG
* *
69060 ACATATCTAATGCGTTATTGAGCTGGAGGCTTGCTTGGA
1 ACATATCTAATGCGTTATTGAGCTGGAGGCTTGTTTGGG
* * *
69099 ACAAATCTAATGCGTTATTGCTGTTGTGGAGGCTTGTTTGGG
1 ACATATCTAATGCGTTATTG-AG--CTGGAGGCTTGTTTGGG
* *
69141 ACATATCTAATGCGTTGTTGGGCTG
1 ACATATCTAATGCGTTATTGAGCTG
69166 CTGTGGGCTT
Statistics
Matches: 88, Mismatches: 12, Indels: 9
0.81 0.11 0.08
Matches are distributed among these distances:
36 11 0.12
38 1 0.01
39 42 0.48
40 1 0.01
41 1 0.01
42 32 0.36
ACGTcount: A:0.21, C:0.13, G:0.30, T:0.36
Consensus pattern (39 bp):
ACATATCTAATGCGTTATTGAGCTGGAGGCTTGTTTGGG
Left flanking sequence: Indices 68524 -- 69023
CGGCCGCCAAGAACAACCGCGACGGCAAGTGGTACTACTACAACGACGCGCGGGTGACGCCGCTC
GACCTGCCGGAGGAGGTGATCACGGGGGCGGCCTACTTGTTGTTCTACCACAAGCGCAGCCCGGT
GAAGGGGTCGCAGCACATCCAGCAGTTGCTCGCCACGGGCGAGCAGGAGTTTTCCGCGCGGCTCC
AGGAGAACAACCGGCTGCTCAGCCAGGTGGTGGCCCAGTGCCACGAGTTTGCCGCGCAGCAGCCG
CGCGTGCCGCAGTTTACCGTAGAAGAGGAGCCAGACTTGTACGAGGAAGAGAACGGGGGTGACGA
CGGCGGCGACGACGGGCGTGCCCGCAAACAGCGGGTGCTTCTGAAGGACCCGACGTCGAACAAGG
TGGCGCACATCAATTCCAGCGGCGATGAGCGCATTGCGCATTCGCCGAAACCCGACGACTCGGAG
TAGATAGAGAAGGTACGTAATACAGGGGTAAACAGGGGGAAATAC
Right flanking sequence: Indices 69166 -- 69665
CTGTGGGCTTTCTTGCTTGCCTGTGGTCTAGACCTTGCGACTATAAAATATTCGTATGTTTTATT
CCACTTTCGCTAGTCGGTAGAATTTGCAGCCAAAGCGACGGGTGGTTGCGGGGTGGTTGCGGCCG
GAGTGGTTGCGACCAGGGTGGCTGTGACCACGGGTCTACTGGTATTTCATTAACAAGCGGGTTGC
TGACGTCTGGTCAGTGATTTTGTGGGGTGGTTAGACGAGACGGTGGTGCCTTAGGTATGTATCGT
AGTCTGTACCCCAGGTGCATAGTGTGGTCCATAAAGAGCCAGCGGATGCTCTCGTCAAAGTAATG
GGAGAACAGCTGTCGAGCTTGGTCTTGTTTGTCGAGAGCGAACCGTGGTCTACGCGGTTTGGCAT
TTTTACAAGCCCTCTTGCCTTGTGTGTTGCAGTCAGTCTTTTAATTTTGGCGGCGTTAGGCATTC
GCTGGATGTTTACTCAAACTCGCCAGCCCCCAGACACCACCAGAA
Found at i:78898 original size:30 final size:29
Alignment explanation
Indices: 78862--78952 Score: 93
Period size: 30 Copynumber: 3.1 Consensus size: 29
78852 AACGCGTGCT
78862 GCTGCTGCTGCAACGCCAACTGCTGCTGGC
1 GCTGCTGCT-CAACGCCAACTGCTGCTGGC
*
78892 GCTGCTGGTCCTCAAACG-C--CTGTTGCTGGC
1 GCTGCT-G--CTC-AACGCCAACTGCTGCTGGC
78922 GCTGCTGCTC--CGCCAACTGCTGCTGGC
1 GCTGCTGCTCAACGCCAACTGCTGCTGGC
78949 GCTG
1 GCTG
78953 GGCCTCCAAC
Statistics
Matches: 52, Mismatches: 2, Indels: 17
0.73 0.03 0.24
Matches are distributed among these distances:
24 2 0.04
25 1 0.02
27 17 0.33
29 1 0.02
30 22 0.42
31 1 0.02
32 2 0.04
33 6 0.12
ACGTcount: A:0.10, C:0.36, G:0.31, T:0.23
Consensus pattern (29 bp):
GCTGCTGCTCAACGCCAACTGCTGCTGGC
Left flanking sequence: Indices 78362 -- 78861
GCGGATCTGCGCCTGCAACTTTTCGATCTCCTGGTCCTTGGCGCCCTTGACCCGGTCCAAGTCCA
ACCGGGCACGGTCGCGCTCGCGGATGAGGTCGGCCAACTCGAGGTTCTTCAGCTTCAAGTCCTTC
TCGTACTTTTCCTTCTTCTGGATCAGCTCCTGCGCCAGGTTGATCTTTTGCTGGATCTTCTTGAA
CTTCAGCAACAAGTTCAAGTGCTCGCCGCGCAACTGCAGGTAGAGCTTGGCCAACTTCTCGTACT
TTTTCGTCCAGTTGGCGATCTGCTCCTCGAGGTTGCGGATCTGCTCGTCCTTCAGCGCCAACTGC
TGGGTGGCGGTGTTGTTGAACAGCTGCAACTCGGTCTCCAACAGCTTGACCCGCAGGTCGTACTG
CTGCAACAAGTTCTGGTCGTTGTCGTACTGGTTCTTGAACATCAACAAGTCGTGCTCGAGCTCCA
GCACCCGCAGCGCCAGCTGGGTCTGCTGCGCCTGCAACGCGTGCT
Right flanking sequence: Indices 78953 -- 79452
GGCCTCCAACTGCGCCTGGATGGCTGCCTGCTCCTCCATCTGCGCGTTGAGCCATCCCGTCTGCT
GCGACTGCATCTGCGGCAACTCCGGTGGCGGGGTCGCTGGCGGCGCCATCGTGGCCTCGCTGGCC
ACCCGCTCCACGGGGCGCGGGGGCGCGATCGGCTCGCCGCCGTCGGTCACCTTCAAGTTGGGCGG
GTGCGCCAGCAACTTCGGGATCTGCACCAACAGCGTCAAGAACTTGATGGCGTGACAGTCGGTGT
AGAAGTCCCGCAACATGAAGTACTGCAGGTTGAAGCGGTCAAACAACCCCTGCAACAAGTCGTCC
TCGCCCAATTGCTGGTACATGGCCCGCAACATCAGGGTGCAAAACTTGTAGATTCCGTACAGCTC
GGCGATGAGCGGCACCAACGCCAGCACCTTGCACAAGTTGTTGTTGGTCTGGTGGATGGTGGCAA
AGATGAGCTTCTGCAAGTCGTTGATGGCGTCCTGCAAGTCCATCA
Found at i:78945 original size:27 final size:27
Alignment explanation
Indices: 78865--78952 Score: 95
Period size: 27 Copynumber: 3.1 Consensus size: 27
78855 GCGTGCTGCT
**
78865 GCTGCTGCAACGCCAACTGCTGCTGGC
1 GCTGCTGCTCCGCCAACTGCTGCTGGC
* * * *
78892 GCTGCTGGTCCTCAAACGCCTGTTGCTGGC
1 GCTGCTGCTCCGCCAA---CTGCTGCTGGC
78922 GCTGCTGCTCCGCCAACTGCTGCTGGC
1 GCTGCTGCTCCGCCAACTGCTGCTGGC
78949 GCTG
1 GCTG
78953 GGCCTCCAAC
Statistics
Matches: 48, Mismatches: 10, Indels: 6
0.75 0.16 0.09
Matches are distributed among these distances:
27 25 0.52
30 23 0.48
ACGTcount: A:0.10, C:0.36, G:0.31, T:0.23
Consensus pattern (27 bp):
GCTGCTGCTCCGCCAACTGCTGCTGGC
Left flanking sequence: Indices 78365 -- 78864
GATCTGCGCCTGCAACTTTTCGATCTCCTGGTCCTTGGCGCCCTTGACCCGGTCCAAGTCCAACC
GGGCACGGTCGCGCTCGCGGATGAGGTCGGCCAACTCGAGGTTCTTCAGCTTCAAGTCCTTCTCG
TACTTTTCCTTCTTCTGGATCAGCTCCTGCGCCAGGTTGATCTTTTGCTGGATCTTCTTGAACTT
CAGCAACAAGTTCAAGTGCTCGCCGCGCAACTGCAGGTAGAGCTTGGCCAACTTCTCGTACTTTT
TCGTCCAGTTGGCGATCTGCTCCTCGAGGTTGCGGATCTGCTCGTCCTTCAGCGCCAACTGCTGG
GTGGCGGTGTTGTTGAACAGCTGCAACTCGGTCTCCAACAGCTTGACCCGCAGGTCGTACTGCTG
CAACAAGTTCTGGTCGTTGTCGTACTGGTTCTTGAACATCAACAAGTCGTGCTCGAGCTCCAGCA
CCCGCAGCGCCAGCTGGGTCTGCTGCGCCTGCAACGCGTGCTGCT
Right flanking sequence: Indices 78953 -- 79452
GGCCTCCAACTGCGCCTGGATGGCTGCCTGCTCCTCCATCTGCGCGTTGAGCCATCCCGTCTGCT
GCGACTGCATCTGCGGCAACTCCGGTGGCGGGGTCGCTGGCGGCGCCATCGTGGCCTCGCTGGCC
ACCCGCTCCACGGGGCGCGGGGGCGCGATCGGCTCGCCGCCGTCGGTCACCTTCAAGTTGGGCGG
GTGCGCCAGCAACTTCGGGATCTGCACCAACAGCGTCAAGAACTTGATGGCGTGACAGTCGGTGT
AGAAGTCCCGCAACATGAAGTACTGCAGGTTGAAGCGGTCAAACAACCCCTGCAACAAGTCGTCC
TCGCCCAATTGCTGGTACATGGCCCGCAACATCAGGGTGCAAAACTTGTAGATTCCGTACAGCTC
GGCGATGAGCGGCACCAACGCCAGCACCTTGCACAAGTTGTTGTTGGTCTGGTGGATGGTGGCAA
AGATGAGCTTCTGCAAGTCGTTGATGGCGTCCTGCAAGTCCATCA
Found at i:80058 original size:17 final size:15
Alignment explanation
Indices: 80036--80075 Score: 53
Period size: 16 Copynumber: 2.5 Consensus size: 15
80026 GGGTTGGCTG
80036 GGGGTGTGGAGGGGGT
1 GGGGTGTGG-GGGGGT
*
80052 GGTGGTGTGGTGGGGT
1 GG-GGTGTGGGGGGGT
80068 GGGGTGTG
1 GGGGTGTG
80076 CGGAAGGTGA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
15 6 0.27
16 9 0.41
17 7 0.32
ACGTcount: A:0.03, C:0.00, G:0.72, T:0.25
Consensus pattern (15 bp):
GGGGTGTGGGGGGGT
Left flanking sequence: Indices 79536 -- 80035
TACCCGGGGTTGTTGCGGTGGAAGTCGAGCTTCTGCAAGATGTACTTGTCGTACTGGGAGATGAG
CCGGCCGTAGGGCGTTCCCCGCAGCGGGAACACCTTGCCCAACAGGGCGATGAAGTCGCGGTTGC
GGTACCCGTCCTTCAACGTGTTGGGGTGGCCCTCCTGCAACACCTTGTGGATCATGATGAGGGCC
TTGAATAGCGGCACCTCTTCCTGCTGCAACGGCTGGATCTTGACGGCGTTCCAGAAGGCCCGCGA
GTTTTTGTGGTCCCAGGTGTACACGATACACGCACGGACATGCTTGCGCTTGGGCGGCACCTCGT
CGGCATTGCATGCCTTCTTGACGGCTATCTGCAAATCAACTTCTGCCCGGGACATTGCGTGGACA
CTGGCAATTGGCAGACTGGGTGAGTGTCCGAGCGGACGTGGTTATGCGCAATCTATGCGGGGTCA
CGTGCGACACAGCCTGGTGGGGGAGACGATGGCGTGGGTTGGCTG
Right flanking sequence: Indices 80076 -- 80575
CGGAAGGTGATGGGTGGATGTGGTGGGAGTGGGTGGGGCTCGTTGCGTGGTATTGTAGGTTTGGC
GTGGGTGGGCCGCTACCGTGGCTGGATCAGGTGGATCGGAGAAAATGCCGCAACCGAGACGAGAG
CGGTGAGGGGCAATTGGTGTGGAGAGGTGTGGTTTAGGTAGAGTGGGGTGGTGGGAAGGGAGATT
GGGTACTGGTTTATTCCGAACGGGCTGGCGTGTAGCTGGTCTCTCTACTAGTCCCGGCTTCGTCT
CGATCGGACAAAACATTTTGTCTCAAATTTCATCTTTTCTGAAAAAATACAATACGATACATACG
ATACATAGATACTATCTACACGGCTCTATACGGCCACCATCACGTCGTTAATTTATTAGTACACC
ATTTAGACCGCTCTCCCATAGTTCTTCTTGCCCACATCAAACGGCAAGTACTTGTACTTGACCAT
GTGCTGGATCTGCTTGCGCATGGTAAACGTAAACAAGATAATAAA
Found at i:81391 original size:14 final size:14
Alignment explanation
Indices: 81372--81404 Score: 66
Period size: 14 Copynumber: 2.4 Consensus size: 14
81362 TATATCATTT
81372 CTCATTGCTCGTAG
1 CTCATTGCTCGTAG
81386 CTCATTGCTCGTAG
1 CTCATTGCTCGTAG
81400 CTCAT
1 CTCAT
81405 AGCGCGCTCA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.15, C:0.30, G:0.18, T:0.36
Consensus pattern (14 bp):
CTCATTGCTCGTAG
Left flanking sequence: Indices 80872 -- 81371
ACACCCGCAACATGAACAACGCCAAAAGCACGCCGAACGCCGCCCATCTCTGGATCTTGAACGGC
ACCACGTCGTCCAACATTTTCTGGTAGGTCACCTTGACCCGGTTGATCTGCATCATCACCGGGTT
TTGTCCACTACTCAGCTCCATGGTTATCAGTGTCTCGTTACCTGTTCACTATTTTTCAAGACGCG
CAAGGCGTGTCGCGTCACGTGACGGGCTCGGGGGCGATACGGGAGGAAACGTGACGTTTACCGTC
GTCTGCGGTCCCGCGGGTGGTAGCGTGATGCGGGCGAGATAATGGCTAGATTGTTTACCCTGGGT
GACATTGTTGTTCGATCACGCCTACGATAACGCGTCCGTTCCCGCGCACTGCCCTACTACAAGAA
CGTAAGGTGGTAGCGAGAGCGAGTGACGGGAGTTTATGGCAAGACAATTGAATCAAAACAATTGA
ATGAAGACTTAGTTTTGGCGAGATTTATGTATTCGTATATCATTT
Right flanking sequence: Indices 81405 -- 81904
AGCGCGCTCATGTCTCATGGCAGCAGTTTACTTGCCACAAGTGCAGCCCTCGTCAGTGCACTTCT
GACAGGCAGTCTTGTCACAGCCCTTGCAGTTGCAGTCAGAGGTGCAAGAGGCACACACGTTGGCA
CAAGCGCAGTCCTCACCAGTGCACAGCTTGCACTTGACCTTGGAGCAGGTCTCGTCGGGGCACTT
GCAGCCAGGGGAACATCCAGTACAAACGTCAGAAGCAGCCATTTTTGAATTATAGTAAGAAGAGT
GACATTCGTGCTAGCTATTTATATTCTCGTAGATATCTTGCGATAATTGCTATTGCTTCAGCTGC
ACTGTTACCAAACCTTCGCCTCGGTGGTGGTGCTCTTTTCAAACTACAGGTTGGTGGCTGCAAAT
TTCTCGTAAACAGTAGGCACCGCTCCACATTTTACCTTCGCTAACAACGCAGAGCCTCAACTGTG
GGTCAAACGACCTTAATGGTTGTCAGGAATCAGAAAAAGCAATTT
Found at i:86985 original size:7 final size:7
Alignment explanation
Indices: 86969--87034 Score: 71
Period size: 7 Copynumber: 9.6 Consensus size: 7
86959 CACCACCATA
86969 ACCCACC
1 ACCCACC
*
86976 ACCTACC
1 ACCCACC
86983 ACCCACC
1 ACCCACC
86990 ACCCACC
1 ACCCACC
*
86997 A-CCTCC
1 ACCCACC
*
87003 ACCCACA
1 ACCCACC
*
87010 ACACACC
1 ACCCACC
*
87017 ACCCACA
1 ACCCACC
*
87024 ACACACC
1 ACCCACC
87031 ACCC
1 ACCC
87035 CCCTCTCTCG
Statistics
Matches: 46, Mismatches: 12, Indels: 2
0.77 0.20 0.03
Matches are distributed among these distances:
6 5 0.11
7 41 0.89
ACGTcount: A:0.33, C:0.64, G:0.00, T:0.03
Consensus pattern (7 bp):
ACCCACC
Left flanking sequence: Indices 86469 -- 86968
AGAACTTGGCGGGGTTGGCGTTGTAGCGCTTCTTGTCAAAGTCGCCCACCGGGTGGTCGTACTGC
TTTTCGATGAGCTGCTTCATCTCGTCGATCTGTTCCTGGCCCCACTCGACGTGGTCCCACGCGTT
GTGGTCGAACACCAGCGCCTCGTCGTTGAGGAACCGCTGGCCGAACGTGAACGGCTGGTCGGTGC
GCTTGTCCACCGACTTGCCGCTGAGGCGGTCATCGAGCAGCGGCTTGAGGATCTTGGGTTCTTCC
TGCGACATGCGATGAGTTGGATTTCCGCATTTGGACGCGCGATCTAGTAAGGTGAATAGATAGCG
GAATAGATAGCAACGTAACAGTGGTCAGGGCACTATACTACGCCCATCAGTCATGTCAGTCGAAC
GATCACAATAAAGGAATTACACTGGCTAGTCTAAGTACTCGAAACTCACACTCACCACTCCATCT
AACCCTAACCATACCGTCCTACTACTATCTAGCCACACCACCATA
Right flanking sequence: Indices 87035 -- 87534
CCCTCTCTCGTCATACCACCCTGTCACCCCTTTCGTCCACCCCACCCAGGACCCTGACGATCGAA
TCTTCGTTCACGGGCCCGCTCCACCAGCACCACCTCGCAACCGCCGTCACGTCAAACCCGCTACG
TGACACCACGGGGGACATGGCGAGATATAAACCGTCAGCGCTGACACCACGTCACCCGCAACCGT
CCCCTACTACATCCGTCACTCATCCCGTCACTCCGCCGTCTTGCTCATGCTATATAAACCCTACA
CAATACCTTTTGTTTGCAGGCTGGCTCGCGCACACACCACTACGCGTTTTTCGGATTTTATAAAC
AACCACGACTCCATCAACACCGGGTGCGCGATGAGCAGCAAGAAGCGGTACCTTCCCCTCGCCAA
TGTGCCGAGGCTCCCGCTCAAGGAGACCAGCGGCAACATCCCGCTGCCCCAGCTCAAACGCCCCC
GCACAGAAACCGCCCCCGAAAAGAAGACCGCGTCGCGAGGACGCC
Found at i:86985 original size:20 final size:21
Alignment explanation
Indices: 86960--87019 Score: 79
Period size: 20 Copynumber: 3.0 Consensus size: 21
86950 ATCTAGCCAC
*
86960 ACCA-CCATAACCCACCACCT
1 ACCACCCACAACCCACCACCT
*
86980 ACCACCCACCACCCACCACCT
1 ACCACCCACAACCCACCACCT
*
87001 -CCACCCACAACACACCACC
1 ACCACCCACAACCCACCACC
87020 CACAACACAC
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
20 21 0.60
21 14 0.40
ACGTcount: A:0.33, C:0.62, G:0.00, T:0.05
Consensus pattern (21 bp):
ACCACCCACAACCCACCACCT
Left flanking sequence: Indices 86460 -- 86959
AGATGTCCCAGAACTTGGCGGGGTTGGCGTTGTAGCGCTTCTTGTCAAAGTCGCCCACCGGGTGG
TCGTACTGCTTTTCGATGAGCTGCTTCATCTCGTCGATCTGTTCCTGGCCCCACTCGACGTGGTC
CCACGCGTTGTGGTCGAACACCAGCGCCTCGTCGTTGAGGAACCGCTGGCCGAACGTGAACGGCT
GGTCGGTGCGCTTGTCCACCGACTTGCCGCTGAGGCGGTCATCGAGCAGCGGCTTGAGGATCTTG
GGTTCTTCCTGCGACATGCGATGAGTTGGATTTCCGCATTTGGACGCGCGATCTAGTAAGGTGAA
TAGATAGCGGAATAGATAGCAACGTAACAGTGGTCAGGGCACTATACTACGCCCATCAGTCATGT
CAGTCGAACGATCACAATAAAGGAATTACACTGGCTAGTCTAAGTACTCGAAACTCACACTCACC
ACTCCATCTAACCCTAACCATACCGTCCTACTACTATCTAGCCAC
Right flanking sequence: Indices 87020 -- 87519
CACAACACACCACCCCCCTCTCTCGTCATACCACCCTGTCACCCCTTTCGTCCACCCCACCCAGG
ACCCTGACGATCGAATCTTCGTTCACGGGCCCGCTCCACCAGCACCACCTCGCAACCGCCGTCAC
GTCAAACCCGCTACGTGACACCACGGGGGACATGGCGAGATATAAACCGTCAGCGCTGACACCAC
GTCACCCGCAACCGTCCCCTACTACATCCGTCACTCATCCCGTCACTCCGCCGTCTTGCTCATGC
TATATAAACCCTACACAATACCTTTTGTTTGCAGGCTGGCTCGCGCACACACCACTACGCGTTTT
TCGGATTTTATAAACAACCACGACTCCATCAACACCGGGTGCGCGATGAGCAGCAAGAAGCGGTA
CCTTCCCCTCGCCAATGTGCCGAGGCTCCCGCTCAAGGAGACCAGCGGCAACATCCCGCTGCCCC
AGCTCAAACGCCCCCGCACAGAAACCGCCCCCGAAAAGAAGACCG
Found at i:86998 original size:34 final size:34
Alignment explanation
Indices: 86957--87033 Score: 86
Period size: 34 Copynumber: 2.3 Consensus size: 34
86947 ACTATCTAGC
* *
86957 CACACCACCAT-AACCCACCAC-CTACCACCCACCA
1 CACACCACC-TCAACCCACAACAC-ACCACCCACAA
* *
86991 CCCACCACCTCCACCCACAACACACCACCCACAA
1 CACACCACCTCAACCCACAACACACCACCCACAA
87025 CACACCACC
1 CACACCACC
87034 CCCCTCTCTC
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
33 1 0.03
34 34 0.94
35 1 0.03
ACGTcount: A:0.35, C:0.61, G:0.00, T:0.04
Consensus pattern (34 bp):
CACACCACCTCAACCCACAACACACCACCCACAA
Left flanking sequence: Indices 86457 -- 86956
AGAAGATGTCCCAGAACTTGGCGGGGTTGGCGTTGTAGCGCTTCTTGTCAAAGTCGCCCACCGGG
TGGTCGTACTGCTTTTCGATGAGCTGCTTCATCTCGTCGATCTGTTCCTGGCCCCACTCGACGTG
GTCCCACGCGTTGTGGTCGAACACCAGCGCCTCGTCGTTGAGGAACCGCTGGCCGAACGTGAACG
GCTGGTCGGTGCGCTTGTCCACCGACTTGCCGCTGAGGCGGTCATCGAGCAGCGGCTTGAGGATC
TTGGGTTCTTCCTGCGACATGCGATGAGTTGGATTTCCGCATTTGGACGCGCGATCTAGTAAGGT
GAATAGATAGCGGAATAGATAGCAACGTAACAGTGGTCAGGGCACTATACTACGCCCATCAGTCA
TGTCAGTCGAACGATCACAATAAAGGAATTACACTGGCTAGTCTAAGTACTCGAAACTCACACTC
ACCACTCCATCTAACCCTAACCATACCGTCCTACTACTATCTAGC
Right flanking sequence: Indices 87034 -- 87533
CCCCTCTCTCGTCATACCACCCTGTCACCCCTTTCGTCCACCCCACCCAGGACCCTGACGATCGA
ATCTTCGTTCACGGGCCCGCTCCACCAGCACCACCTCGCAACCGCCGTCACGTCAAACCCGCTAC
GTGACACCACGGGGGACATGGCGAGATATAAACCGTCAGCGCTGACACCACGTCACCCGCAACCG
TCCCCTACTACATCCGTCACTCATCCCGTCACTCCGCCGTCTTGCTCATGCTATATAAACCCTAC
ACAATACCTTTTGTTTGCAGGCTGGCTCGCGCACACACCACTACGCGTTTTTCGGATTTTATAAA
CAACCACGACTCCATCAACACCGGGTGCGCGATGAGCAGCAAGAAGCGGTACCTTCCCCTCGCCA
ATGTGCCGAGGCTCCCGCTCAAGGAGACCAGCGGCAACATCCCGCTGCCCCAGCTCAAACGCCCC
CGCACAGAAACCGCCCCCGAAAAGAAGACCGCGTCGCGAGGACGC
Found at i:87030 original size:11 final size:14
Alignment explanation
Indices: 86957--87034 Score: 79
Period size: 14 Copynumber: 5.7 Consensus size: 14
86947 ACTATCTAGC
*
86957 CACACCA-CCATAA
1 CACACCACCCACAA
* * *
86970 CCCACCACCTACCA
1 CACACCACCCACAA
* *
86984 CCCACCACCCACCA
1 CACACCACCCACAA
*
86998 C-CTCCACCCACAA
1 CACACCACCCACAA
87011 CACACCACCCACAA
1 CACACCACCCACAA
87025 CACACCACCC
1 CACACCACCC
87035 CCCTCTCTCG
Statistics
Matches: 55, Mismatches: 8, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
13 17 0.31
14 38 0.69
ACGTcount: A:0.35, C:0.62, G:0.00, T:0.04
Consensus pattern (14 bp):
CACACCACCCACAA
Left flanking sequence: Indices 86457 -- 86956
AGAAGATGTCCCAGAACTTGGCGGGGTTGGCGTTGTAGCGCTTCTTGTCAAAGTCGCCCACCGGG
TGGTCGTACTGCTTTTCGATGAGCTGCTTCATCTCGTCGATCTGTTCCTGGCCCCACTCGACGTG
GTCCCACGCGTTGTGGTCGAACACCAGCGCCTCGTCGTTGAGGAACCGCTGGCCGAACGTGAACG
GCTGGTCGGTGCGCTTGTCCACCGACTTGCCGCTGAGGCGGTCATCGAGCAGCGGCTTGAGGATC
TTGGGTTCTTCCTGCGACATGCGATGAGTTGGATTTCCGCATTTGGACGCGCGATCTAGTAAGGT
GAATAGATAGCGGAATAGATAGCAACGTAACAGTGGTCAGGGCACTATACTACGCCCATCAGTCA
TGTCAGTCGAACGATCACAATAAAGGAATTACACTGGCTAGTCTAAGTACTCGAAACTCACACTC
ACCACTCCATCTAACCCTAACCATACCGTCCTACTACTATCTAGC
Right flanking sequence: Indices 87035 -- 87534
CCCTCTCTCGTCATACCACCCTGTCACCCCTTTCGTCCACCCCACCCAGGACCCTGACGATCGAA
TCTTCGTTCACGGGCCCGCTCCACCAGCACCACCTCGCAACCGCCGTCACGTCAAACCCGCTACG
TGACACCACGGGGGACATGGCGAGATATAAACCGTCAGCGCTGACACCACGTCACCCGCAACCGT
CCCCTACTACATCCGTCACTCATCCCGTCACTCCGCCGTCTTGCTCATGCTATATAAACCCTACA
CAATACCTTTTGTTTGCAGGCTGGCTCGCGCACACACCACTACGCGTTTTTCGGATTTTATAAAC
AACCACGACTCCATCAACACCGGGTGCGCGATGAGCAGCAAGAAGCGGTACCTTCCCCTCGCCAA
TGTGCCGAGGCTCCCGCTCAAGGAGACCAGCGGCAACATCCCGCTGCCCCAGCTCAAACGCCCCC
GCACAGAAACCGCCCCCGAAAAGAAGACCGCGTCGCGAGGACGCC
Found at i:87514 original size:17 final size:18
Alignment explanation
Indices: 87483--87520 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 18
87473 CCAGCTCAAA
* *
87483 CGCCCCCGCACAGAA-AC
1 CGCCCCCGAAAAGAAGAC
87500 CGCCCCCGAAAAGAAGAC
1 CGCCCCCGAAAAGAAGAC
87518 CGC
1 CGC
87521 GTCGCGAGGA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
17 13 0.72
18 5 0.28
ACGTcount: A:0.32, C:0.47, G:0.21, T:0.00
Consensus pattern (18 bp):
CGCCCCCGAAAAGAAGAC
Left flanking sequence: Indices 86983 -- 87482
ACCCACCACCCACCACCTCCACCCACAACACACCACCCACAACACACCACCCCCCTCTCTCGTCA
TACCACCCTGTCACCCCTTTCGTCCACCCCACCCAGGACCCTGACGATCGAATCTTCGTTCACGG
GCCCGCTCCACCAGCACCACCTCGCAACCGCCGTCACGTCAAACCCGCTACGTGACACCACGGGG
GACATGGCGAGATATAAACCGTCAGCGCTGACACCACGTCACCCGCAACCGTCCCCTACTACATC
CGTCACTCATCCCGTCACTCCGCCGTCTTGCTCATGCTATATAAACCCTACACAATACCTTTTGT
TTGCAGGCTGGCTCGCGCACACACCACTACGCGTTTTTCGGATTTTATAAACAACCACGACTCCA
TCAACACCGGGTGCGCGATGAGCAGCAAGAAGCGGTACCTTCCCCTCGCCAATGTGCCGAGGCTC
CCGCTCAAGGAGACCAGCGGCAACATCCCGCTGCCCCAGCTCAAA
Right flanking sequence: Indices 87521 -- 88020
GTCGCGAGGACGCCTCCTGGGCGACGAGTTGGTCCAGTGGCAGACGGAGTGGCGCAAGATCATGC
GCGAGTCCACGGTCTACTTCGAACTGGCCCTGGCCCTGGCCGCCCAGACCCACGAGCACAACCGC
GCCGTGCGATTTTTGCGGCTGATTGGCTGCCTGGTGCCCCTGTTTTTTGACGGCAGCGTCACCAT
CATCGTGCTGCGGCGCAAGTACGAGGACAAGCCGTACCCGCCCAACGACATCTTCAGCCAGGTGG
CCGCGAAGCGCATCAAGGTGTGGGACTACGACAAGGTGTTTCGGTTTTTGCGCAACTTGGGTGTC
GCGGTGGACGACCTGGCACCCGATGCGGAAAACCTTTCCACCCTCTTGAAGGAGGAGCGGATCTA
CGGAGCCACCGAGCGCGATCCCACCGCGCGCCGCGACGACTTGCACTACCTCGACAAAAACTACT
TGTATGTGTACGACCTCAGCCAGAAAACGCGTCCGGTGGCGGTGC
Found at i:88848 original size:51 final size:51
Alignment explanation
Indices: 88793--88930 Score: 204
Period size: 51 Copynumber: 2.7 Consensus size: 51
88783 GGGGGACCCC
** * * *
88793 TCGGTGCCGCCGATGTTGGCCATCAAGTTGGCGTGGCCTTCTGGTTGCGCT
1 TCGGTGCCGTTGATGTTGGCCATCAAGTTGGCGTGGCCCTCGGGCTGCGCT
*
88844 TCGGTGCCGTTGATGTTGGCCATCAAGTTGGCGTGGCCCTCGGGCTGGGCT
1 TCGGTGCCGTTGATGTTGGCCATCAAGTTGGCGTGGCCCTCGGGCTGCGCT
* *
88895 TCTGTGCCGTTGATGTTGGCCATCAAGTTGGTGTGG
1 TCGGTGCCGTTGATGTTGGCCATCAAGTTGGCGTGG
88931 GTCAGCCTGG
Statistics
Matches: 79, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
51 79 1.00
ACGTcount: A:0.09, C:0.24, G:0.37, T:0.30
Consensus pattern (51 bp):
TCGGTGCCGTTGATGTTGGCCATCAAGTTGGCGTGGCCCTCGGGCTGCGCT
Left flanking sequence: Indices 88293 -- 88792
CTGCTGGTGGCGCGGGTCCCCTGTGACGTCACCGCGCTGGGCTACAACGGGGCTCTGAACCTGGT
GCAGATGCTGATGGAGCTGGGGCTCCACCTGAACAACAACGGCGGCAACGGGTTGGGCCCGATGA
CGGCGGCGCCGCTGCGCAACCTCACCAACTTGAAGCGCCGGATCATCCGCCGCAAGCAGCAGCAG
CAGCCCAAGCCGCGCGAGCGCGAGCACCACCCGGGCTACTGCGAAAACTGCCGCATCAAGTACGA
CAACTTTGACGACCACATCACCTCGACCCGCCACCGGCGGTTTGCCAACGACCGCCGCAACTTCG
AGGACATCGACATGTTGATAGCCACCCTCCAGGAGAGCTCGTCCATCAACGGCGGCGCCCCCTCC
AACGGGCTCTACAACCTCGCATAACGATATAGCATTTACATGATAAACACGATATTTACGACGAC
CCGCCAAAATTGGCCATCAAGTTGCGGTGCTTCTTGGGGGACCCC
Right flanking sequence: Indices 88931 -- 89430
GTCAGCCTGGGGTGTTCCTCGGCGGCCTTGGGCGTGGGCTTGCTGGTGCCTGCTAGGTTGGCGAT
CATGTCTACTGGTTGGATGGTGGTTGTTGGATGTCACTGGCTGTGGATGTCACTGGCTGTGGATG
TCTACTGGTTGTTGGCACTACCCCGTTATATAGCTGATGTGGGGACCAGCTGACCATGCACGGCC
ATGCTGGCGTGTCGTAGAAAGGCGAAAACGATGACTTGCTGGCGGTGGCCGTGACACGGCGGTTC
TGGGGCGTGGAGCTGTGGTGGTGGGTGCTTTTGTACGGTGAGAGCGGCCCCTTCACCAGGGCTAC
TTTTGTGTACGTAGAGCGGGACCACCACGTAGCCACGGGCAAAAACCGCTCCGCCTCGCCAACTG
CTGGCCAGACCCTACGAGACGACAGCGTATTTACCCCGCAGTAGCACACCACTCCTCGGACCCGA
TCACCTGGTCGGTGGATGTTCCGCTCGTGATACCGCAACGCACAA
Found at i:89044 original size:16 final size:16
Alignment explanation
Indices: 89023--89068 Score: 83
Period size: 16 Copynumber: 2.8 Consensus size: 16
89013 TGGTGGTTGT
89023 TGGATGTCACTGGCTG
1 TGGATGTCACTGGCTG
89039 TGGATGTCACTGGCTG
1 TGGATGTCACTGGCTG
89055 TGGATGTCTACTGG
1 TGGATGTC-ACTGG
89069 TTGTTGGCAC
Statistics
Matches: 29, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
16 24 0.83
17 5 0.17
ACGTcount: A:0.13, C:0.17, G:0.37, T:0.33
Consensus pattern (16 bp):
TGGATGTCACTGGCTG
Left flanking sequence: Indices 88523 -- 89022
CTACTGCGAAAACTGCCGCATCAAGTACGACAACTTTGACGACCACATCACCTCGACCCGCCACC
GGCGGTTTGCCAACGACCGCCGCAACTTCGAGGACATCGACATGTTGATAGCCACCCTCCAGGAG
AGCTCGTCCATCAACGGCGGCGCCCCCTCCAACGGGCTCTACAACCTCGCATAACGATATAGCAT
TTACATGATAAACACGATATTTACGACGACCCGCCAAAATTGGCCATCAAGTTGCGGTGCTTCTT
GGGGGACCCCTCGGTGCCGCCGATGTTGGCCATCAAGTTGGCGTGGCCTTCTGGTTGCGCTTCGG
TGCCGTTGATGTTGGCCATCAAGTTGGCGTGGCCCTCGGGCTGGGCTTCTGTGCCGTTGATGTTG
GCCATCAAGTTGGTGTGGGTCAGCCTGGGGTGTTCCTCGGCGGCCTTGGGCGTGGGCTTGCTGGT
GCCTGCTAGGTTGGCGATCATGTCTACTGGTTGGATGGTGGTTGT
Right flanking sequence: Indices 89069 -- 89568
TTGTTGGCACTACCCCGTTATATAGCTGATGTGGGGACCAGCTGACCATGCACGGCCATGCTGGC
GTGTCGTAGAAAGGCGAAAACGATGACTTGCTGGCGGTGGCCGTGACACGGCGGTTCTGGGGCGT
GGAGCTGTGGTGGTGGGTGCTTTTGTACGGTGAGAGCGGCCCCTTCACCAGGGCTACTTTTGTGT
ACGTAGAGCGGGACCACCACGTAGCCACGGGCAAAAACCGCTCCGCCTCGCCAACTGCTGGCCAG
ACCCTACGAGACGACAGCGTATTTACCCCGCAGTAGCACACCACTCCTCGGACCCGATCACCTGG
TCGGTGGATGTTCCGCTCGTGATACCGCAACGCACAACGAGCACGGCCATTGAACAGCACGTCTA
GCTCATGAATACATAACCCCACCCACTCAATTAACAACATCAGACCACCTCGACCACCTTGTCCA
TTTGTCCACCTTGACAACCTTATCCATCTAGGCACCTTCGTCTCG
Found at i:93478 original size:27 final size:25
Alignment explanation
Indices: 93444--93535 Score: 67
Period size: 28 Copynumber: 3.4 Consensus size: 25
93434 GTGTAGTGCG
*
93444 AGGATATTCAGGGGAGCATATAGAGC
1 AGGATATTCA-GGAAGCATATAGAGC
* *
93470 AGGAGTATTCAGTAAGCATGTAGAGC
1 AGGA-TATTCAGGAAGCATATAGAGC
* * *
93496 AGCGAATATTCAAGTAAGCCTATACAGC
1 AG-G-ATATTC-AGGAAGCATATAGAGC
93524 AGCGAATATTCA
1 AG-G-ATATTCA
93536 ATAAGCATGT
Statistics
Matches: 56, Mismatches: 6, Indels: 7
0.81 0.09 0.10
Matches are distributed among these distances:
26 18 0.32
27 13 0.23
28 25 0.45
ACGTcount: A:0.37, C:0.15, G:0.26, T:0.22
Consensus pattern (25 bp):
AGGATATTCAGGAAGCATATAGAGC
Left flanking sequence: Indices 92944 -- 93443
CCGACGCATTGCCGCTGGCCCTGGGCGCTCCCCGCAACCCCTACTTGAAGAAAGCGACCCGTTTC
ACCGTGAAACGGGTCGATCTGACCAAACAACAGCGCCAGCTGAGCGTGGCGGACCTGCTTGACGG
GGAGGCAGCGGTGAAGGATAAAGAAAAGTTGATGGCAGCGCAGAAAAAGCACGACGCTTACATCA
AGCGCATTGCCAAGATCGACAAGGAAATCGAGTTTTTGTCTAAATTGCTACCCCCGTACAACGTC
GAGATTGACTACGCAACGCGCAACAAGATCACCAAGGCGATCGAAAAGCTTCGGATGAAGCAGGA
CGAGTTGCAGCGGAAAAAATACGACATGGGCATCACCATCTCGCGGTTGTGGCGCGGGCACGACG
AGAGCGACGTGTGGCAAAAGGGGTTTTCCAACCACTGACATAGCATTAATGATTACGAACTATTG
GAGGTGTGGAGTAGTGAGATGGGTTACAAAAGGGCGTGTAGTGCG
Right flanking sequence: Indices 93536 -- 94035
ATAAGCATGTACATATGCACTCAACATGGTCATCTTGAATTTTCACCATGTATCCAAACATGCAA
CAGGTTTTTGTTACATTAAATTACGTCTCATTCATTACATTTCATTCATTACATTTCATTCATTA
CATTCATGCACTTGTTTTGGAATCAAACTCTGAAACATATGTAATGGTCACCACACCTACGAACA
GGTGTTCGGACGTGTACCTGAAAACCCACATCACCACGACATTATCTGGAAATTTTCACCGCAAT
GCACCCGGGAACCCTGGTTATGACGTGTTTGTGTAGTATGTGCCATTCCATGGAAATGTACCATG
GTAACGTACCTAGGCTACCATGTGCACACCGTCGCAGCCGTGCCAATTGCAGCAAGGAGAAACGG
AGACAAGAAAAGAACAGAACACAGCCACATGTGAACAAGCCACCGCACCCAGGTGAACGTGAAAT
ACCCCCTACTCTGAAAAAAGCTGTGCCACGCACCCCCACAAAAAC
Found at i:93524 original size:28 final size:28
Alignment explanation
Indices: 93458--93543 Score: 115
Period size: 28 Copynumber: 3.2 Consensus size: 28
93448 TATTCAGGGG
*
93458 AGCATATAGAGCAG-GAGTATTC-AGTA
1 AGCATATAGAGCAGCGAATATTCAAGTA
*
93484 AGCATGTAGAGCAGCGAATATTCAAGTA
1 AGCATATAGAGCAGCGAATATTCAAGTA
* *
93512 AGCCTATACAGCAGCGAATATTCAA-TA
1 AGCATATAGAGCAGCGAATATTCAAGTA
93539 AGCAT
1 AGCAT
93544 GTACATATGC
Statistics
Matches: 52, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
26 13 0.25
27 13 0.25
28 26 0.50
ACGTcount: A:0.40, C:0.16, G:0.22, T:0.22
Consensus pattern (28 bp):
AGCATATAGAGCAGCGAATATTCAAGTA
Left flanking sequence: Indices 92958 -- 93457
CTGGCCCTGGGCGCTCCCCGCAACCCCTACTTGAAGAAAGCGACCCGTTTCACCGTGAAACGGGT
CGATCTGACCAAACAACAGCGCCAGCTGAGCGTGGCGGACCTGCTTGACGGGGAGGCAGCGGTGA
AGGATAAAGAAAAGTTGATGGCAGCGCAGAAAAAGCACGACGCTTACATCAAGCGCATTGCCAAG
ATCGACAAGGAAATCGAGTTTTTGTCTAAATTGCTACCCCCGTACAACGTCGAGATTGACTACGC
AACGCGCAACAAGATCACCAAGGCGATCGAAAAGCTTCGGATGAAGCAGGACGAGTTGCAGCGGA
AAAAATACGACATGGGCATCACCATCTCGCGGTTGTGGCGCGGGCACGACGAGAGCGACGTGTGG
CAAAAGGGGTTTTCCAACCACTGACATAGCATTAATGATTACGAACTATTGGAGGTGTGGAGTAG
TGAGATGGGTTACAAAAGGGCGTGTAGTGCGAGGATATTCAGGGG
Right flanking sequence: Indices 93544 -- 94043
GTACATATGCACTCAACATGGTCATCTTGAATTTTCACCATGTATCCAAACATGCAACAGGTTTT
TGTTACATTAAATTACGTCTCATTCATTACATTTCATTCATTACATTTCATTCATTACATTCATG
CACTTGTTTTGGAATCAAACTCTGAAACATATGTAATGGTCACCACACCTACGAACAGGTGTTCG
GACGTGTACCTGAAAACCCACATCACCACGACATTATCTGGAAATTTTCACCGCAATGCACCCGG
GAACCCTGGTTATGACGTGTTTGTGTAGTATGTGCCATTCCATGGAAATGTACCATGGTAACGTA
CCTAGGCTACCATGTGCACACCGTCGCAGCCGTGCCAATTGCAGCAAGGAGAAACGGAGACAAGA
AAAGAACAGAACACAGCCACATGTGAACAAGCCACCGCACCCAGGTGAACGTGAAATACCCCCTA
CTCTGAAAAAAGCTGTGCCACGCACCCCCACAAAAACGCCTTCGG
Found at i:93645 original size:14 final size:14
Alignment explanation
Indices: 93628--93669 Score: 84
Period size: 14 Copynumber: 3.0 Consensus size: 14
93618 AAATTACGTC
93628 TCATTCATTACATT
1 TCATTCATTACATT
93642 TCATTCATTACATT
1 TCATTCATTACATT
93656 TCATTCATTACATT
1 TCATTCATTACATT
93670 CATGCACTTG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 28 1.00
ACGTcount: A:0.29, C:0.21, G:0.00, T:0.50
Consensus pattern (14 bp):
TCATTCATTACATT
Left flanking sequence: Indices 93128 -- 93627
CGCTTACATCAAGCGCATTGCCAAGATCGACAAGGAAATCGAGTTTTTGTCTAAATTGCTACCCC
CGTACAACGTCGAGATTGACTACGCAACGCGCAACAAGATCACCAAGGCGATCGAAAAGCTTCGG
ATGAAGCAGGACGAGTTGCAGCGGAAAAAATACGACATGGGCATCACCATCTCGCGGTTGTGGCG
CGGGCACGACGAGAGCGACGTGTGGCAAAAGGGGTTTTCCAACCACTGACATAGCATTAATGATT
ACGAACTATTGGAGGTGTGGAGTAGTGAGATGGGTTACAAAAGGGCGTGTAGTGCGAGGATATTC
AGGGGAGCATATAGAGCAGGAGTATTCAGTAAGCATGTAGAGCAGCGAATATTCAAGTAAGCCTA
TACAGCAGCGAATATTCAATAAGCATGTACATATGCACTCAACATGGTCATCTTGAATTTTCACC
ATGTATCCAAACATGCAACAGGTTTTTGTTACATTAAATTACGTC
Right flanking sequence: Indices 93670 -- 94169
CATGCACTTGTTTTGGAATCAAACTCTGAAACATATGTAATGGTCACCACACCTACGAACAGGTG
TTCGGACGTGTACCTGAAAACCCACATCACCACGACATTATCTGGAAATTTTCACCGCAATGCAC
CCGGGAACCCTGGTTATGACGTGTTTGTGTAGTATGTGCCATTCCATGGAAATGTACCATGGTAA
CGTACCTAGGCTACCATGTGCACACCGTCGCAGCCGTGCCAATTGCAGCAAGGAGAAACGGAGAC
AAGAAAAGAACAGAACACAGCCACATGTGAACAAGCCACCGCACCCAGGTGAACGTGAAATACCC
CCTACTCTGAAAAAAGCTGTGCCACGCACCCCCACAAAAACGCCTTCGGGCTCCTCTCGTATATG
CCACCATAACCACAGTAGTCCCATACACCCCAAACAAACCCTAAACAGACCCTAGATCAGCAGTA
GAAACCGTGCTAGCCACACACTACGCCACTACGCCACCCAACAAC
Found at i:97633 original size:14 final size:14
Alignment explanation
Indices: 97614--97707 Score: 74
Period size: 14 Copynumber: 7.1 Consensus size: 14
97604 AGTGAGTGTA
97614 GCATGAGTTTAGAT
1 GCATGAGTTTAGAT
97628 GCATGAG--TAGAT
1 GCATGAGTTTAGAT
97640 GCATGAG--TAGAT
1 GCATGAGTTTAGAT
* *
97652 GCCTGAGGTTAGAT
1 GCATGAGTTTAGAT
* *
97666 --AGGAGTCTAGAT
1 GCATGAGTTTAGAT
* *
97678 GCCTCAGTTTAGAT
1 GCATGAGTTTAGAT
* *
97692 GCCTGAGGTTAGAT
1 GCATGAGTTTAGAT
97706 GC
1 GC
97708 TTGAATGCTG
Statistics
Matches: 65, Mismatches: 11, Indels: 8
0.77 0.13 0.10
Matches are distributed among these distances:
12 31 0.48
14 34 0.52
ACGTcount: A:0.27, C:0.13, G:0.32, T:0.29
Consensus pattern (14 bp):
GCATGAGTTTAGAT
Left flanking sequence: Indices 97114 -- 97613
GTGCCGGTTCATTTTCCGCCAGGTGTGCCTGGCGATCTACCACTTGCACAAGCACGGCATTGTCC
ACCGCGACATCAAGGACGAGAACGTCATTGTCGATGAGAACGGCATCATCAAGTTGATCGACTTT
GGCTCGGCCGGGTACACCAAACAGGGCCCGTTCGACGTGTTTGTCGGCACCATCGACTACGCGCT
GCCGGAAGTGCTCCGCGGCGACAAGTACGACGGGCGGCCCCAGGACATCTGGGCGTTGGGCATTT
TGCTTTATACCATGCTCTACAAAGAGAACCCGTTTTACAACGTGGACGAGATCATGGAGGGGGAC
TTGCGGGTGCCCTACGTGATCTCCGACGCCAGCATAGCCCTCATCAAACGGATTTTGGTGCGGGA
CGTGGCCTCGCGCCCGTCCATCACCGATATTGTCGAGGATGAGTGGCTCCAATTCTAGTGACATT
TGCATAATAGACACGCCCCCGGGCAGAGACGAAGGAGTGAGTGTA
Right flanking sequence: Indices 97708 -- 98207
TTGAATGCTGATGCCTACGATTTCCTAATGGGTTTAAAGTAAAACAACCACAAACGTTATGAACC
CTGGCACTATGGTTACAAGCCCGTATTCCTCCTTCTTGGTTACGAACCCGGCCATGCCTAGTCGC
TTGCTTCACCAAATCATATCACTATCTGCAGTACACCGATCATCGCACCATGGCCCATGTGCCCA
AGTTCATCAAGGAGACCCGGTGGTACAACCAGCAAGAGGAGCGGGTTTTCAAGGCCGAGGGCGAT
GCCAGCATCGACCGCGGCGACGCCGAGCTTGGAGCAGGCATCCAGGACGGCGTGAAGCCCGCAGA
CCGGTGGGACGAGGCTCGCGACCAGTGGTTTGGCTACACAGTGGACGAGTGGGAACAGCAACTCA
AGAACTGGCGGCTGCGTCCGGCGACCGACGACGCCGACGACTCCGACGACACCGACTACGAGCTT
GAGCTCATCGAGCTCGGGCTCTCCCAGCACGACATCAAGAAGACC
Found at i:97640 original size:12 final size:12
Alignment explanation
Indices: 97623--97658 Score: 63
Period size: 12 Copynumber: 3.0 Consensus size: 12
97613 AGCATGAGTT
97623 TAGATGCATGAG
1 TAGATGCATGAG
97635 TAGATGCATGAG
1 TAGATGCATGAG
*
97647 TAGATGCCTGAG
1 TAGATGCATGAG
97659 GTTAGATAGG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.31, C:0.11, G:0.33, T:0.25
Consensus pattern (12 bp):
TAGATGCATGAG
Left flanking sequence: Indices 97123 -- 97622
CATTTTCCGCCAGGTGTGCCTGGCGATCTACCACTTGCACAAGCACGGCATTGTCCACCGCGACA
TCAAGGACGAGAACGTCATTGTCGATGAGAACGGCATCATCAAGTTGATCGACTTTGGCTCGGCC
GGGTACACCAAACAGGGCCCGTTCGACGTGTTTGTCGGCACCATCGACTACGCGCTGCCGGAAGT
GCTCCGCGGCGACAAGTACGACGGGCGGCCCCAGGACATCTGGGCGTTGGGCATTTTGCTTTATA
CCATGCTCTACAAAGAGAACCCGTTTTACAACGTGGACGAGATCATGGAGGGGGACTTGCGGGTG
CCCTACGTGATCTCCGACGCCAGCATAGCCCTCATCAAACGGATTTTGGTGCGGGACGTGGCCTC
GCGCCCGTCCATCACCGATATTGTCGAGGATGAGTGGCTCCAATTCTAGTGACATTTGCATAATA
GACACGCCCCCGGGCAGAGACGAAGGAGTGAGTGTAGCATGAGTT
Right flanking sequence: Indices 97659 -- 98158
GTTAGATAGGAGTCTAGATGCCTCAGTTTAGATGCCTGAGGTTAGATGCTTGAATGCTGATGCCT
ACGATTTCCTAATGGGTTTAAAGTAAAACAACCACAAACGTTATGAACCCTGGCACTATGGTTAC
AAGCCCGTATTCCTCCTTCTTGGTTACGAACCCGGCCATGCCTAGTCGCTTGCTTCACCAAATCA
TATCACTATCTGCAGTACACCGATCATCGCACCATGGCCCATGTGCCCAAGTTCATCAAGGAGAC
CCGGTGGTACAACCAGCAAGAGGAGCGGGTTTTCAAGGCCGAGGGCGATGCCAGCATCGACCGCG
GCGACGCCGAGCTTGGAGCAGGCATCCAGGACGGCGTGAAGCCCGCAGACCGGTGGGACGAGGCT
CGCGACCAGTGGTTTGGCTACACAGTGGACGAGTGGGAACAGCAACTCAAGAACTGGCGGCTGCG
TCCGGCGACCGACGACGCCGACGACTCCGACGACACCGACTACGA
Found at i:100274 original size:45 final size:45
Alignment explanation
Indices: 100219--100310 Score: 175
Period size: 45 Copynumber: 2.0 Consensus size: 45
100209 CGTATAGACA
100219 TAATTGTGACATTAACCCTATTCTAGCAACCCGTTCTCGCGGAGG
1 TAATTGTGACATTAACCCTATTCTAGCAACCCGTTCTCGCGGAGG
*
100264 TAATTTTGACATTAACCCTATTCTAGCAACCCGTTCTCGCGGAGG
1 TAATTGTGACATTAACCCTATTCTAGCAACCCGTTCTCGCGGAGG
100309 TA
1 TA
100311 CTCGACGTAC
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
45 46 1.00
ACGTcount: A:0.25, C:0.26, G:0.18, T:0.30
Consensus pattern (45 bp):
TAATTGTGACATTAACCCTATTCTAGCAACCCGTTCTCGCGGAGG
Left flanking sequence: Indices 99719 -- 100218
TTGCTCAACAGCGACCCCGACGTGATTGCCGAGGTGCCCGAGCCCGACCACCCCGACGACGACCC
CACGTTGCCGCTGCCGGTGGCCACGCCGCAGATCCTGCCGGTGTTTGGCTCGGTCAACCTGCGGT
ACACCACGCTGCGGCGGGTGCTGAACCCGATCCTGCCCCACACCACCGTGTTGCCGCTGACGATG
ACCCTGCCCGCTATCCGCAGCCTGCTTGGCATCGAGTCCACCGCCAAGTTTGCCTTGCCGGACCC
GGCGTTGCTGTCGTCGCTGGTCGATGACGCTCCTCTTCCCAAGAAGCGCAAGTTCCGCAGCCGGC
CTCCCAGCGACGTCGTCATCAACCCGCGGTTGCTCATCAGCGACTACGCTGGCGACGACATGGTG
GAGGGGGTGGACGGAGAGATCAAGGAGGAGGACGCTGGCCGCACCTTGCTTGCGATGAAGAAACT
GAGTATTGGTAATCTTCTCAATTAACCCATAGAACCGTATAGACA
Right flanking sequence: Indices 100311 -- 100810
CTCGACGTACTCGTCCACCACCGCGGGCCACGCCGCCATCTCGTCGTAGCCCGCAAACGTGGCGG
GGTCTGCCGCCACCACCTCGGTGAAGAACGCGCCAAACATCACCCAGGTGTCCCGGCTCAACAGC
CGCCGCCACTCGGTGGTGACAAACGTGTACCACTGGTCCAACCGCGCCAACGCCGCGGGGTCCGT
CACCACAAGCGGCCAGAGCAACCGCCAGTAGTCGCACGCGGTGTCGCCGGCAAGCAACTTCTGGT
TGGGCACCTCCATCAAGAACCCGAACGTGTAGGCGTAGAGCCGCTTGAACTCGGCGGGGTCCCGC
GCCACCTGGGCCGCGTACCCGTCGACGTGCTTCTTGAGCTCTGCTAGCGACAGCACCTGGGCCGC
CGTCACCGCCTCGAGGAACTCGTGCTTAGTGAACACCCCCATCTGCGGCAGCGCGAGGAGGTAGG
CGAGCATGAGCGCCCGCGGGTCCTCGGGCTCGATGGCGAGGTCGC
Found at i:101132 original size:30 final size:29
Alignment explanation
Indices: 101098--101163 Score: 71
Period size: 30 Copynumber: 2.2 Consensus size: 29
101088 CAGTGCGTGT
101098 GGTGGTGGTGG-AAGGTGGTAAAGGTGGAAG
1 GGTGGTGGTGGTAAGGTGG--AAGGTGGAAG
* * *
101128 GGTGGAAGGTGGTAGGGTGGAAGGTGGTAG
1 GGTGG-TGGTGGTAAGGTGGAAGGTGGAAG
101158 GGTGGT
1 GGTGGT
101164 AGAGGTGGTA
Statistics
Matches: 30, Mismatches: 4, Indels: 5
0.77 0.10 0.13
Matches are distributed among these distances:
30 19 0.63
31 5 0.17
32 6 0.20
ACGTcount: A:0.20, C:0.00, G:0.59, T:0.21
Consensus pattern (29 bp):
GGTGGTGGTGGTAAGGTGGAAGGTGGAAG
Left flanking sequence: Indices 100598 -- 101097
TGTAGGCGTAGAGCCGCTTGAACTCGGCGGGGTCCCGCGCCACCTGGGCCGCGTACCCGTCGACG
TGCTTCTTGAGCTCTGCTAGCGACAGCACCTGGGCCGCCGTCACCGCCTCGAGGAACTCGTGCTT
AGTGAACACCCCCATCTGCGGCAGCGCGAGGAGGTAGGCGAGCATGAGCGCCCGCGGGTCCTCGG
GCTCGATGGCGAGGTCGCCGAGCATCGCCAACGTGCCGTCGATGCCGATCTGCTCCGGGTGGTCG
GGATCGCGGTAGGTGTCAAACAACAGTGCGGCCTCGCGGCTGGGCTTGAACTTCTTTTTGCAGTG
GGAGTCGTCGAAGTAGGCCTGGATGGCGTCGTCCACCAGCTTGTATTTGTCGTGGTACTGCTTGG
CCACCGCGGTCGTCAGCCCGGTGACCTCGGTGAACTGGCTGACGAACCTGTCGCTCTTGAACAAT
GGCATGGGTGGTTGAGGTGCACTGGGGAAATTTCGCAGTGCGTGT
Right flanking sequence: Indices 101164 -- 101663
AGAGGTGGTAAACGGTGGTAGAGGTGGTGATCGGGTGGGGTCCCAAATGGGTGGTGGTGGTGTTT
ACGTAGCAGGACATGTGGTGGCTAACTGGTCGATAGTACCCACCACGTGCCTATTCATTTATTCA
CCAACATCAACTTAATCATTTCTTCTTTTACTACGGTCGTTCCACTGCTCACAACCCGTCCTCCT
CGTCTACGGCCTCTCGTCTACGGCCTCCTCCCACATTCTCCGTGACACCTCCGTATTTTTTATGC
GCAAGCCGCACCATCTGTTTACCTCCACCACCAGTTCCCTCTCCTATCTACTACCCCCCATCCTT
TCTCCATGCTCTCGCCCGAGGTCATCCGGTCAATCATCCCGTTGCCGGACCTTGGCGAGCTCTCG
CACGACCGCCGCGAAAACGACAACGACATCGACGTGGCCCTCGACTGGCTCGCGCCGTTCTTCCC
CTCGGACAAGCCGTTGGCCGACCCCAGTGCCCGCATCCGCCTGGC
Found at i:101133 original size:8 final size:7
Alignment explanation
Indices: 101104--101154 Score: 57
Period size: 7 Copynumber: 6.7 Consensus size: 7
101094 GTGTGGTGGT
101104 GGTGGAA
1 GGTGGAA
101111 GGTGGTAAA
1 GGTGG--AA
101120 GGTGGAA
1 GGTGGAA
101127 GGGTGGAA
1 -GGTGGAA
*
101135 GGTGGTAG
1 GGTGG-AA
101143 GGTGGAA
1 GGTGGAA
101150 GGTGG
1 GGTGG
101155 TAGGGTGGTA
Statistics
Matches: 38, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
7 18 0.47
8 13 0.34
9 7 0.18
ACGTcount: A:0.24, C:0.00, G:0.59, T:0.18
Consensus pattern (7 bp):
GGTGGAA
Left flanking sequence: Indices 100604 -- 101103
CGTAGAGCCGCTTGAACTCGGCGGGGTCCCGCGCCACCTGGGCCGCGTACCCGTCGACGTGCTTC
TTGAGCTCTGCTAGCGACAGCACCTGGGCCGCCGTCACCGCCTCGAGGAACTCGTGCTTAGTGAA
CACCCCCATCTGCGGCAGCGCGAGGAGGTAGGCGAGCATGAGCGCCCGCGGGTCCTCGGGCTCGA
TGGCGAGGTCGCCGAGCATCGCCAACGTGCCGTCGATGCCGATCTGCTCCGGGTGGTCGGGATCG
CGGTAGGTGTCAAACAACAGTGCGGCCTCGCGGCTGGGCTTGAACTTCTTTTTGCAGTGGGAGTC
GTCGAAGTAGGCCTGGATGGCGTCGTCCACCAGCTTGTATTTGTCGTGGTACTGCTTGGCCACCG
CGGTCGTCAGCCCGGTGACCTCGGTGAACTGGCTGACGAACCTGTCGCTCTTGAACAATGGCATG
GGTGGTTGAGGTGCACTGGGGAAATTTCGCAGTGCGTGTGGTGGT
Right flanking sequence: Indices 101155 -- 101654
TAGGGTGGTAGAGGTGGTAAACGGTGGTAGAGGTGGTGATCGGGTGGGGTCCCAAATGGGTGGTG
GTGGTGTTTACGTAGCAGGACATGTGGTGGCTAACTGGTCGATAGTACCCACCACGTGCCTATTC
ATTTATTCACCAACATCAACTTAATCATTTCTTCTTTTACTACGGTCGTTCCACTGCTCACAACC
CGTCCTCCTCGTCTACGGCCTCTCGTCTACGGCCTCCTCCCACATTCTCCGTGACACCTCCGTAT
TTTTTATGCGCAAGCCGCACCATCTGTTTACCTCCACCACCAGTTCCCTCTCCTATCTACTACCC
CCCATCCTTTCTCCATGCTCTCGCCCGAGGTCATCCGGTCAATCATCCCGTTGCCGGACCTTGGC
GAGCTCTCGCACGACCGCCGCGAAAACGACAACGACATCGACGTGGCCCTCGACTGGCTCGCGCC
GTTCTTCCCCTCGGACAAGCCGTTGGCCGACCCCAGTGCCCGCAT
Found at i:101138 original size:15 final size:15
Alignment explanation
Indices: 101104--101162 Score: 75
Period size: 15 Copynumber: 3.9 Consensus size: 15
101094 GTGTGGTGGT
101104 GGTGGAA-GGTGGTAAA
1 GGTGGAAGGGTGG--AA
101120 GGTGGAAGGGTGGAA
1 GGTGGAAGGGTGGAA
*
101135 GGTGGTAGGGTGGAA
1 GGTGGAAGGGTGGAA
*
101150 GGTGGTAGGGTGG
1 GGTGGAAGGGTGG
101163 TAGAGGTGGT
Statistics
Matches: 41, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
15 29 0.71
16 7 0.17
17 5 0.12
ACGTcount: A:0.22, C:0.00, G:0.59, T:0.19
Consensus pattern (15 bp):
GGTGGAAGGGTGGAA
Left flanking sequence: Indices 100604 -- 101103
CGTAGAGCCGCTTGAACTCGGCGGGGTCCCGCGCCACCTGGGCCGCGTACCCGTCGACGTGCTTC
TTGAGCTCTGCTAGCGACAGCACCTGGGCCGCCGTCACCGCCTCGAGGAACTCGTGCTTAGTGAA
CACCCCCATCTGCGGCAGCGCGAGGAGGTAGGCGAGCATGAGCGCCCGCGGGTCCTCGGGCTCGA
TGGCGAGGTCGCCGAGCATCGCCAACGTGCCGTCGATGCCGATCTGCTCCGGGTGGTCGGGATCG
CGGTAGGTGTCAAACAACAGTGCGGCCTCGCGGCTGGGCTTGAACTTCTTTTTGCAGTGGGAGTC
GTCGAAGTAGGCCTGGATGGCGTCGTCCACCAGCTTGTATTTGTCGTGGTACTGCTTGGCCACCG
CGGTCGTCAGCCCGGTGACCTCGGTGAACTGGCTGACGAACCTGTCGCTCTTGAACAATGGCATG
GGTGGTTGAGGTGCACTGGGGAAATTTCGCAGTGCGTGTGGTGGT
Right flanking sequence: Indices 101163 -- 101662
TAGAGGTGGTAAACGGTGGTAGAGGTGGTGATCGGGTGGGGTCCCAAATGGGTGGTGGTGGTGTT
TACGTAGCAGGACATGTGGTGGCTAACTGGTCGATAGTACCCACCACGTGCCTATTCATTTATTC
ACCAACATCAACTTAATCATTTCTTCTTTTACTACGGTCGTTCCACTGCTCACAACCCGTCCTCC
TCGTCTACGGCCTCTCGTCTACGGCCTCCTCCCACATTCTCCGTGACACCTCCGTATTTTTTATG
CGCAAGCCGCACCATCTGTTTACCTCCACCACCAGTTCCCTCTCCTATCTACTACCCCCCATCCT
TTCTCCATGCTCTCGCCCGAGGTCATCCGGTCAATCATCCCGTTGCCGGACCTTGGCGAGCTCTC
GCACGACCGCCGCGAAAACGACAACGACATCGACGTGGCCCTCGACTGGCTCGCGCCGTTCTTCC
CCTCGGACAAGCCGTTGGCCGACCCCAGTGCCCGCATCCGCCTGG
Found at i:101161 original size:8 final size:8
Alignment explanation
Indices: 101120--101173 Score: 58
Period size: 8 Copynumber: 6.9 Consensus size: 8
101110 AGGTGGTAAA
*
101120 GGTGGAAG
1 GGTGGTAG
*
101128 GGTGG-AA
1 GGTGGTAG
101135 GGTGGTAG
1 GGTGGTAG
*
101143 GGTGG-AA
1 GGTGGTAG
101150 GGTGGTAG
1 GGTGGTAG
101158 GGTGGTAG
1 GGTGGTAG
101166 AGGTGGTA
1 -GGTGGTA
101174 AACGGTGGTA
Statistics
Matches: 39, Mismatches: 4, Indels: 5
0.81 0.08 0.10
Matches are distributed among these distances:
7 12 0.31
8 20 0.51
9 7 0.18
ACGTcount: A:0.20, C:0.00, G:0.59, T:0.20
Consensus pattern (8 bp):
GGTGGTAG
Left flanking sequence: Indices 100620 -- 101119
CTCGGCGGGGTCCCGCGCCACCTGGGCCGCGTACCCGTCGACGTGCTTCTTGAGCTCTGCTAGCG
ACAGCACCTGGGCCGCCGTCACCGCCTCGAGGAACTCGTGCTTAGTGAACACCCCCATCTGCGGC
AGCGCGAGGAGGTAGGCGAGCATGAGCGCCCGCGGGTCCTCGGGCTCGATGGCGAGGTCGCCGAG
CATCGCCAACGTGCCGTCGATGCCGATCTGCTCCGGGTGGTCGGGATCGCGGTAGGTGTCAAACA
ACAGTGCGGCCTCGCGGCTGGGCTTGAACTTCTTTTTGCAGTGGGAGTCGTCGAAGTAGGCCTGG
ATGGCGTCGTCCACCAGCTTGTATTTGTCGTGGTACTGCTTGGCCACCGCGGTCGTCAGCCCGGT
GACCTCGGTGAACTGGCTGACGAACCTGTCGCTCTTGAACAATGGCATGGGTGGTTGAGGTGCAC
TGGGGAAATTTCGCAGTGCGTGTGGTGGTGGTGGAAGGTGGTAAA
Right flanking sequence: Indices 101174 -- 101673
AACGGTGGTAGAGGTGGTGATCGGGTGGGGTCCCAAATGGGTGGTGGTGGTGTTTACGTAGCAGG
ACATGTGGTGGCTAACTGGTCGATAGTACCCACCACGTGCCTATTCATTTATTCACCAACATCAA
CTTAATCATTTCTTCTTTTACTACGGTCGTTCCACTGCTCACAACCCGTCCTCCTCGTCTACGGC
CTCTCGTCTACGGCCTCCTCCCACATTCTCCGTGACACCTCCGTATTTTTTATGCGCAAGCCGCA
CCATCTGTTTACCTCCACCACCAGTTCCCTCTCCTATCTACTACCCCCCATCCTTTCTCCATGCT
CTCGCCCGAGGTCATCCGGTCAATCATCCCGTTGCCGGACCTTGGCGAGCTCTCGCACGACCGCC
GCGAAAACGACAACGACATCGACGTGGCCCTCGACTGGCTCGCGCCGTTCTTCCCCTCGGACAAG
CCGTTGGCCGACCCCAGTGCCCGCATCCGCCTGGCCCTCCGCAGC
Found at i:101171 original size:39 final size:42
Alignment explanation
Indices: 101104--101190 Score: 110
Period size: 39 Copynumber: 2.1 Consensus size: 42
101094 GTGTGGTGGT
101104 GGTGGAAGGTGGTAAAGGTGGAAGGGTGG-AA-GGTGGTAG-
1 GGTGGAAGGTGGTAAAGGTGGAAGGGTGGAAACGGTGGTAGA
* *
101143 GGTGGAAGGTGGT-AGGGTGGTAGAGGTGGTAAACGGTGGTAGA
1 GGTGGAAGGTGGTAAAGGTGGAAG-GGTGG-AAACGGTGGTAGA
101186 GGTGG
1 GGTGG
101191 TGATCGGGTG
Statistics
Matches: 41, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
38 8 0.20
39 18 0.44
41 2 0.05
42 8 0.20
43 5 0.12
ACGTcount: A:0.23, C:0.01, G:0.56, T:0.20
Consensus pattern (42 bp):
GGTGGAAGGTGGTAAAGGTGGAAGGGTGGAAACGGTGGTAGA
Left flanking sequence: Indices 100604 -- 101103
CGTAGAGCCGCTTGAACTCGGCGGGGTCCCGCGCCACCTGGGCCGCGTACCCGTCGACGTGCTTC
TTGAGCTCTGCTAGCGACAGCACCTGGGCCGCCGTCACCGCCTCGAGGAACTCGTGCTTAGTGAA
CACCCCCATCTGCGGCAGCGCGAGGAGGTAGGCGAGCATGAGCGCCCGCGGGTCCTCGGGCTCGA
TGGCGAGGTCGCCGAGCATCGCCAACGTGCCGTCGATGCCGATCTGCTCCGGGTGGTCGGGATCG
CGGTAGGTGTCAAACAACAGTGCGGCCTCGCGGCTGGGCTTGAACTTCTTTTTGCAGTGGGAGTC
GTCGAAGTAGGCCTGGATGGCGTCGTCCACCAGCTTGTATTTGTCGTGGTACTGCTTGGCCACCG
CGGTCGTCAGCCCGGTGACCTCGGTGAACTGGCTGACGAACCTGTCGCTCTTGAACAATGGCATG
GGTGGTTGAGGTGCACTGGGGAAATTTCGCAGTGCGTGTGGTGGT
Right flanking sequence: Indices 101191 -- 101690
TGATCGGGTGGGGTCCCAAATGGGTGGTGGTGGTGTTTACGTAGCAGGACATGTGGTGGCTAACT
GGTCGATAGTACCCACCACGTGCCTATTCATTTATTCACCAACATCAACTTAATCATTTCTTCTT
TTACTACGGTCGTTCCACTGCTCACAACCCGTCCTCCTCGTCTACGGCCTCTCGTCTACGGCCTC
CTCCCACATTCTCCGTGACACCTCCGTATTTTTTATGCGCAAGCCGCACCATCTGTTTACCTCCA
CCACCAGTTCCCTCTCCTATCTACTACCCCCCATCCTTTCTCCATGCTCTCGCCCGAGGTCATCC
GGTCAATCATCCCGTTGCCGGACCTTGGCGAGCTCTCGCACGACCGCCGCGAAAACGACAACGAC
ATCGACGTGGCCCTCGACTGGCTCGCGCCGTTCTTCCCCTCGGACAAGCCGTTGGCCGACCCCAG
TGCCCGCATCCGCCTGGCCCTCCGCAGCTGCACCAAGGACGACGC
Found at i:101182 original size:10 final size:9
Alignment explanation
Indices: 101109--101191 Score: 63
Period size: 9 Copynumber: 9.9 Consensus size: 9
101099 GTGGTGGTGG
101109 AAGGTGGTA
1 AAGGTGGTA
101118 AAGGTGG-A
1 AAGGTGGTA
*
101126 AGGGTGG--
1 AAGGTGGTA
101133 AAGGTGGT-
1 AAGGTGGTA
*
101141 AGGGTGG--
1 AAGGTGGTA
101148 AAGGTGGT-
1 AAGGTGGTA
*
101156 AGGGTGGTA
1 AAGGTGGTA
*
101165 GAGGTGGTA
1 AAGGTGGTA
101174 AACGGTGGTA
1 AA-GGTGGTA
*
101184 GAGGTGGT
1 AAGGTGGT
101192 GATCGGGTGG
Statistics
Matches: 61, Mismatches: 9, Indels: 8
0.78 0.12 0.10
Matches are distributed among these distances:
7 12 0.20
8 20 0.33
9 21 0.34
10 8 0.13
ACGTcount: A:0.24, C:0.01, G:0.54, T:0.20
Consensus pattern (9 bp):
AAGGTGGTA
Left flanking sequence: Indices 100609 -- 101108
AGCCGCTTGAACTCGGCGGGGTCCCGCGCCACCTGGGCCGCGTACCCGTCGACGTGCTTCTTGAG
CTCTGCTAGCGACAGCACCTGGGCCGCCGTCACCGCCTCGAGGAACTCGTGCTTAGTGAACACCC
CCATCTGCGGCAGCGCGAGGAGGTAGGCGAGCATGAGCGCCCGCGGGTCCTCGGGCTCGATGGCG
AGGTCGCCGAGCATCGCCAACGTGCCGTCGATGCCGATCTGCTCCGGGTGGTCGGGATCGCGGTA
GGTGTCAAACAACAGTGCGGCCTCGCGGCTGGGCTTGAACTTCTTTTTGCAGTGGGAGTCGTCGA
AGTAGGCCTGGATGGCGTCGTCCACCAGCTTGTATTTGTCGTGGTACTGCTTGGCCACCGCGGTC
GTCAGCCCGGTGACCTCGGTGAACTGGCTGACGAACCTGTCGCTCTTGAACAATGGCATGGGTGG
TTGAGGTGCACTGGGGAAATTTCGCAGTGCGTGTGGTGGTGGTGG
Right flanking sequence: Indices 101192 -- 101691
GATCGGGTGGGGTCCCAAATGGGTGGTGGTGGTGTTTACGTAGCAGGACATGTGGTGGCTAACTG
GTCGATAGTACCCACCACGTGCCTATTCATTTATTCACCAACATCAACTTAATCATTTCTTCTTT
TACTACGGTCGTTCCACTGCTCACAACCCGTCCTCCTCGTCTACGGCCTCTCGTCTACGGCCTCC
TCCCACATTCTCCGTGACACCTCCGTATTTTTTATGCGCAAGCCGCACCATCTGTTTACCTCCAC
CACCAGTTCCCTCTCCTATCTACTACCCCCCATCCTTTCTCCATGCTCTCGCCCGAGGTCATCCG
GTCAATCATCCCGTTGCCGGACCTTGGCGAGCTCTCGCACGACCGCCGCGAAAACGACAACGACA
TCGACGTGGCCCTCGACTGGCTCGCGCCGTTCTTCCCCTCGGACAAGCCGTTGGCCGACCCCAGT
GCCCGCATCCGCCTGGCCCTCCGCAGCTGCACCAAGGACGACGCC
Found at i:101376 original size:14 final size:14
Alignment explanation
Indices: 101357--101385 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
101347 ACCCGTCCTC
101357 CTCGTCTACGGCCT
1 CTCGTCTACGGCCT
101371 CTCGTCTACGGCCT
1 CTCGTCTACGGCCT
101385 C
1 C
101386 CTCCCACATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.07, C:0.45, G:0.21, T:0.28
Consensus pattern (14 bp):
CTCGTCTACGGCCT
Left flanking sequence: Indices 100857 -- 101356
GGGATCGCGGTAGGTGTCAAACAACAGTGCGGCCTCGCGGCTGGGCTTGAACTTCTTTTTGCAGT
GGGAGTCGTCGAAGTAGGCCTGGATGGCGTCGTCCACCAGCTTGTATTTGTCGTGGTACTGCTTG
GCCACCGCGGTCGTCAGCCCGGTGACCTCGGTGAACTGGCTGACGAACCTGTCGCTCTTGAACAA
TGGCATGGGTGGTTGAGGTGCACTGGGGAAATTTCGCAGTGCGTGTGGTGGTGGTGGAAGGTGGT
AAAGGTGGAAGGGTGGAAGGTGGTAGGGTGGAAGGTGGTAGGGTGGTAGAGGTGGTAAACGGTGG
TAGAGGTGGTGATCGGGTGGGGTCCCAAATGGGTGGTGGTGGTGTTTACGTAGCAGGACATGTGG
TGGCTAACTGGTCGATAGTACCCACCACGTGCCTATTCATTTATTCACCAACATCAACTTAATCA
TTTCTTCTTTTACTACGGTCGTTCCACTGCTCACAACCCGTCCTC
Right flanking sequence: Indices 101386 -- 101885
CTCCCACATTCTCCGTGACACCTCCGTATTTTTTATGCGCAAGCCGCACCATCTGTTTACCTCCA
CCACCAGTTCCCTCTCCTATCTACTACCCCCCATCCTTTCTCCATGCTCTCGCCCGAGGTCATCC
GGTCAATCATCCCGTTGCCGGACCTTGGCGAGCTCTCGCACGACCGCCGCGAAAACGACAACGAC
ATCGACGTGGCCCTCGACTGGCTCGCGCCGTTCTTCCCCTCGGACAAGCCGTTGGCCGACCCCAG
TGCCCGCATCCGCCTGGCCCTCCGCAGCTGCACCAAGGACGACGCCAGCTCGGCCGAGTTCACCT
ATCTCTACTGCAACTCGGTCACCGCGGCCTGGCGCACCCTCTGGGACACCACGGCGCCGCCGCCC
CGCTTCCCGGAGCTCCTGCAGTTCGTGGCCCGCATCGACAACTACTACCGCTTCCACTGCCTGCA
CTTGTGGCTCAGCGAGCGTGCGGCGGACATGGTGCGCTCCACCGT
Found at i:105756 original size:13 final size:13
Alignment explanation
Indices: 105731--105868 Score: 100
Period size: 13 Copynumber: 11.1 Consensus size: 13
105721 ACGAGAAAAA
105731 CTAGCAT-GGCAC
1 CTAGCATGGGCAC
105743 CTAGCATGGGCAC
1 CTAGCATGGGCAC
105756 CTAGCATGGGCAC
1 CTAGCATGGGCAC
105769 CT---A--GGCAC
1 CTAGCATGGGCAC
*
105777 TCTAACATGGGCAC
1 -CTAGCATGGGCAC
*
105791 TCTAGCATTGGCACC
1 -CTAGCATGGGCA-C
*
105806 CTACCAT-GGCAC
1 CTAGCATGGGCAC
105818 C---C-TGGGCACC
1 CTAGCATGGGCA-C
*
105828 CTACCATGGGCAC
1 CTAGCATGGGCAC
105841 CTAGCATGGGCACC
1 CTAGCATGGGCA-C
* *
105855 CTTGCAAGGGCAC
1 CTAGCATGGGCAC
105868 C
1 C
105869 GTATTATGGG
Statistics
Matches: 105, Mismatches: 6, Indels: 29
0.75 0.04 0.21
Matches are distributed among these distances:
8 6 0.06
9 7 0.07
10 3 0.03
12 10 0.10
13 39 0.37
14 39 0.37
15 1 0.01
ACGTcount: A:0.22, C:0.36, G:0.25, T:0.17
Consensus pattern (13 bp):
CTAGCATGGGCAC
Left flanking sequence: Indices 105231 -- 105730
CCCGCTCCCCAGGTCCGCACTCCCACAGCGGTGACCGCGATGCGGCCAATGCCACGGGCACCGCC
GCAGCAGCAGTTCTACGGCATGCGCCAGCTGCCAATGTACCCCGATTTCTACCCCAACTACCAGC
CGGACGCGCTGGGCCGCATGTTGCAGAAGCGCAAGCTCCAGGAGGTGGTGACGCTGATGAGCGTG
GACGAGGGCGAGGCCAACGTGGTGCGGGGCGCTCCGCTCATGGACGGCGACGTGGAGGACCTCTT
GGTCGACTTGGCGGACGAGTTCGTCACCCAGGTCACCTCGTTTGCCTGCCGGCTCGCCAAGCACC
GCAAGGTGGAGTTGATCGACATGAAGGACGTGCAGCTCAATCTCGAGCGCAACTGGGGCGTGCGG
GTGCCCGGGTACAACTTGGACGAGATCAAAACCACCCGCAAGTGGCAGCCGCTGTCCGAGTACCA
GGAGCGCCAGGCGCTGGTGGAACAGGCGAAGAAGGACGAGAAAAA
Right flanking sequence: Indices 105869 -- 106368
GTATTATGGGTGCTCCAAACTAACACGGGCACCCTAGCATGGCACCCCATTACGGTCTATTGACT
GGTCTATAACTCTATAATGCAAAGCACCGCTCGATGCTGTCGGGATTGTTGCCCCACCAGTGAGG
CATCCGTAGCTGCGGGAACACCGACACCGCCACAAAGAGCGCGAGCACCGCGAGGTTGAGTCCGG
TGTCGCACGCGGCGGCCACGATGTAGTTGTAGTCCTTCCACACCCGGTGGCGGTACCGCTGGGCC
CAGAACATGGTGACGGTGCCTCCGATAAACTTGGAGAGGTACCCCGTCAGGATGTTGCCGTAGAA
CCGCAGCATGCTCAGGAAGAACACGGTGGTGTTCCAGACGTTGAAGCCCACGTGCGGGTACCGCC
GGTGGAGGGCATAGATCGCGAGCGGACCCACGAGCCCCGCGGCAAACCCGTAGGGGAGCCACTGG
TAGTTGGCAAAGAGCCGGGTGGGGCCAAGCACCACGTACTGGATG
Found at i:105788 original size:22 final size:22
Alignment explanation
Indices: 105751--105795 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 22
105741 ACCTAGCATG
*
105751 GGCACCTAGCATGGGCAC-CTA
1 GGCACCTAACATGGGCACTCTA
105772 GGCACTCTAACATGGGCACTCTA
1 GGCAC-CTAACATGGGCACTCTA
105795 G
1 G
105796 CATTGGCACC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 5 0.24
22 12 0.57
23 4 0.19
ACGTcount: A:0.24, C:0.31, G:0.27, T:0.18
Consensus pattern (22 bp):
GGCACCTAACATGGGCACTCTA
Left flanking sequence: Indices 105251 -- 105750
TCCCACAGCGGTGACCGCGATGCGGCCAATGCCACGGGCACCGCCGCAGCAGCAGTTCTACGGCA
TGCGCCAGCTGCCAATGTACCCCGATTTCTACCCCAACTACCAGCCGGACGCGCTGGGCCGCATG
TTGCAGAAGCGCAAGCTCCAGGAGGTGGTGACGCTGATGAGCGTGGACGAGGGCGAGGCCAACGT
GGTGCGGGGCGCTCCGCTCATGGACGGCGACGTGGAGGACCTCTTGGTCGACTTGGCGGACGAGT
TCGTCACCCAGGTCACCTCGTTTGCCTGCCGGCTCGCCAAGCACCGCAAGGTGGAGTTGATCGAC
ATGAAGGACGTGCAGCTCAATCTCGAGCGCAACTGGGGCGTGCGGGTGCCCGGGTACAACTTGGA
CGAGATCAAAACCACCCGCAAGTGGCAGCCGCTGTCCGAGTACCAGGAGCGCCAGGCGCTGGTGG
AACAGGCGAAGAAGGACGAGAAAAACTAGCATGGCACCTAGCATG
Right flanking sequence: Indices 105796 -- 106295
CATTGGCACCCTACCATGGCACCCTGGGCACCCTACCATGGGCACCTAGCATGGGCACCCTTGCA
AGGGCACCGTATTATGGGTGCTCCAAACTAACACGGGCACCCTAGCATGGCACCCCATTACGGTC
TATTGACTGGTCTATAACTCTATAATGCAAAGCACCGCTCGATGCTGTCGGGATTGTTGCCCCAC
CAGTGAGGCATCCGTAGCTGCGGGAACACCGACACCGCCACAAAGAGCGCGAGCACCGCGAGGTT
GAGTCCGGTGTCGCACGCGGCGGCCACGATGTAGTTGTAGTCCTTCCACACCCGGTGGCGGTACC
GCTGGGCCCAGAACATGGTGACGGTGCCTCCGATAAACTTGGAGAGGTACCCCGTCAGGATGTTG
CCGTAGAACCGCAGCATGCTCAGGAAGAACACGGTGGTGTTCCAGACGTTGAAGCCCACGTGCGG
GTACCGCCGGTGGAGGGCATAGATCGCGAGCGGACCCACGAGCCC
Found at i:105824 original size:36 final size:36
Alignment explanation
Indices: 105784--105856 Score: 94
Period size: 36 Copynumber: 2.0 Consensus size: 36
105774 CACTCTAACA
* * *
105784 TGGGCACTCTAGCATTGGCACCCTACCAT-GGCACCC
1 TGGGCACCCTACCATGGGCA-CCTACCATGGGCACCC
*
105820 TGGGCACCCTACCATGGGCACCTAGCATGGGCACCC
1 TGGGCACCCTACCATGGGCACCTACCATGGGCACCC
105856 T
1 T
105857 TGCAAGGGCA
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
35 7 0.22
36 25 0.78
ACGTcount: A:0.19, C:0.38, G:0.25, T:0.18
Consensus pattern (36 bp):
TGGGCACCCTACCATGGGCACCTACCATGGGCACCC
Left flanking sequence: Indices 105284 -- 105783
ACGGGCACCGCCGCAGCAGCAGTTCTACGGCATGCGCCAGCTGCCAATGTACCCCGATTTCTACC
CCAACTACCAGCCGGACGCGCTGGGCCGCATGTTGCAGAAGCGCAAGCTCCAGGAGGTGGTGACG
CTGATGAGCGTGGACGAGGGCGAGGCCAACGTGGTGCGGGGCGCTCCGCTCATGGACGGCGACGT
GGAGGACCTCTTGGTCGACTTGGCGGACGAGTTCGTCACCCAGGTCACCTCGTTTGCCTGCCGGC
TCGCCAAGCACCGCAAGGTGGAGTTGATCGACATGAAGGACGTGCAGCTCAATCTCGAGCGCAAC
TGGGGCGTGCGGGTGCCCGGGTACAACTTGGACGAGATCAAAACCACCCGCAAGTGGCAGCCGCT
GTCCGAGTACCAGGAGCGCCAGGCGCTGGTGGAACAGGCGAAGAAGGACGAGAAAAACTAGCATG
GCACCTAGCATGGGCACCTAGCATGGGCACCTAGGCACTCTAACA
Right flanking sequence: Indices 105857 -- 106356
TGCAAGGGCACCGTATTATGGGTGCTCCAAACTAACACGGGCACCCTAGCATGGCACCCCATTAC
GGTCTATTGACTGGTCTATAACTCTATAATGCAAAGCACCGCTCGATGCTGTCGGGATTGTTGCC
CCACCAGTGAGGCATCCGTAGCTGCGGGAACACCGACACCGCCACAAAGAGCGCGAGCACCGCGA
GGTTGAGTCCGGTGTCGCACGCGGCGGCCACGATGTAGTTGTAGTCCTTCCACACCCGGTGGCGG
TACCGCTGGGCCCAGAACATGGTGACGGTGCCTCCGATAAACTTGGAGAGGTACCCCGTCAGGAT
GTTGCCGTAGAACCGCAGCATGCTCAGGAAGAACACGGTGGTGTTCCAGACGTTGAAGCCCACGT
GCGGGTACCGCCGGTGGAGGGCATAGATCGCGAGCGGACCCACGAGCCCCGCGGCAAACCCGTAG
GGGAGCCACTGGTAGTTGGCAAAGAGCCGGGTGGGGCCAAGCACC
Found at i:105867 original size:14 final size:14
Alignment explanation
Indices: 105731--105868 Score: 92
Period size: 14 Copynumber: 11.0 Consensus size: 14
105721 ACGAGAAAAA
105731 CTAGCAT-GGCA-C
1 CTAGCATGGGCACC
105743 CTAGCATGGGCA-C
1 CTAGCATGGGCACC
105756 CTAGCATGGGCA-C
1 CTAGCATGGGCACC
*
105769 CT---A--GGCACT
1 CTAGCATGGGCACC
* *
105778 CTAACATGGGCACT
1 CTAGCATGGGCACC
*
105792 CTAGCATTGGCACC
1 CTAGCATGGGCACC
*
105806 CTACCAT-GGCA-C
1 CTAGCATGGGCACC
105818 C---C-TGGGCACC
1 CTAGCATGGGCACC
*
105828 CTACCATGGGCA-C
1 CTAGCATGGGCACC
105841 CTAGCATGGGCACC
1 CTAGCATGGGCACC
* *
105855 CTTGCAAGGGCACC
1 CTAGCATGGGCACC
105869 GTATTATGGG
Statistics
Matches: 104, Mismatches: 8, Indels: 26
0.75 0.06 0.19
Matches are distributed among these distances:
8 5 0.05
9 7 0.07
10 3 0.03
12 10 0.10
13 37 0.36
14 42 0.40
ACGTcount: A:0.22, C:0.36, G:0.25, T:0.17
Consensus pattern (14 bp):
CTAGCATGGGCACC
Left flanking sequence: Indices 105231 -- 105730
CCCGCTCCCCAGGTCCGCACTCCCACAGCGGTGACCGCGATGCGGCCAATGCCACGGGCACCGCC
GCAGCAGCAGTTCTACGGCATGCGCCAGCTGCCAATGTACCCCGATTTCTACCCCAACTACCAGC
CGGACGCGCTGGGCCGCATGTTGCAGAAGCGCAAGCTCCAGGAGGTGGTGACGCTGATGAGCGTG
GACGAGGGCGAGGCCAACGTGGTGCGGGGCGCTCCGCTCATGGACGGCGACGTGGAGGACCTCTT
GGTCGACTTGGCGGACGAGTTCGTCACCCAGGTCACCTCGTTTGCCTGCCGGCTCGCCAAGCACC
GCAAGGTGGAGTTGATCGACATGAAGGACGTGCAGCTCAATCTCGAGCGCAACTGGGGCGTGCGG
GTGCCCGGGTACAACTTGGACGAGATCAAAACCACCCGCAAGTGGCAGCCGCTGTCCGAGTACCA
GGAGCGCCAGGCGCTGGTGGAACAGGCGAAGAAGGACGAGAAAAA
Right flanking sequence: Indices 105869 -- 106368
GTATTATGGGTGCTCCAAACTAACACGGGCACCCTAGCATGGCACCCCATTACGGTCTATTGACT
GGTCTATAACTCTATAATGCAAAGCACCGCTCGATGCTGTCGGGATTGTTGCCCCACCAGTGAGG
CATCCGTAGCTGCGGGAACACCGACACCGCCACAAAGAGCGCGAGCACCGCGAGGTTGAGTCCGG
TGTCGCACGCGGCGGCCACGATGTAGTTGTAGTCCTTCCACACCCGGTGGCGGTACCGCTGGGCC
CAGAACATGGTGACGGTGCCTCCGATAAACTTGGAGAGGTACCCCGTCAGGATGTTGCCGTAGAA
CCGCAGCATGCTCAGGAAGAACACGGTGGTGTTCCAGACGTTGAAGCCCACGTGCGGGTACCGCC
GGTGGAGGGCATAGATCGCGAGCGGACCCACGAGCCCCGCGGCAAACCCGTAGGGGAGCCACTGG
TAGTTGGCAAAGAGCCGGGTGGGGCCAAGCACCACGTACTGGATG
Found at i:115804 original size:12 final size:12
Alignment explanation
Indices: 115787--115832 Score: 92
Period size: 12 Copynumber: 3.8 Consensus size: 12
115777 GAACAGAGTA
115787 GAGGAGCATACG
1 GAGGAGCATACG
115799 GAGGAGCATACG
1 GAGGAGCATACG
115811 GAGGAGCATACG
1 GAGGAGCATACG
115823 GAGGAGCATA
1 GAGGAGCATA
115833 TGAAGCAGTA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 34 1.00
ACGTcount: A:0.35, C:0.15, G:0.41, T:0.09
Consensus pattern (12 bp):
GAGGAGCATACG
Left flanking sequence: Indices 115287 -- 115786
GCACACACCGCCGGCGATCTGCCCCACCACCGCCGCGGGCTGTCGTCGCTGCTACAGCTGACACA
GATGGCGGCCGCCGACGCTGCTGCCATCGTCACGGCGCCGCCCACGGTGCGACGGCTGTCGCTGA
ACCGCCTGGGCGCCTACTCGCCCAAGATCGGCCCCCAATTGGGGGTGCACAAGCCGGTGCATTTC
CACAGCAACGGCGTGCACCAGGCGCTTGCCAATGGCGACATTGACGCCGTGCTTGGGCCTGCGCT
ACCGCTAGCGGTGGCGCCCGAGCGGTTGGCGGACCCCCACCAGGACATCTACGACATGGCGTTGA
GCCAGGACATCCCTCCGCTTGACTTTAACCCGGGCCAGGGGCTTACGGTGGAGGGTCTTTCCCTC
GATCTCTCCCCAGACGACGGGTGGAGCTTTACTGTAGGCAAAGAGGGCTACTAATCACGACATAT
GGGAATGGGTTTGTAATATAAGAGGACACAAACTGGAACAGAGTA
Right flanking sequence: Indices 115833 -- 116332
TGAAGCAGTATACAAAACAACATACGATGGGCGTGGCAGCCCGCATGATATTACTCATATTTCGT
AATGCTTACGCTTATCAATATTAGTCATACGTTTCACCTCGTAAATGTGCAACTCCGTGACTAAA
CTCGCGGTCAGGCTCGGCTCAACCGTTGGCCGTGTCGGTGGCGAGTGACCTCGGGCTTGGCAGGT
TGAGGCGACGGCAGGTGCACTCGGTGGCTGGTGACGCTGCCCACCGTTAAGCCCATCTCGATTAG
GAAAAATTATGCAGTCGGAACAAGAATCGCCTGATGCCGAAATCAAGGTCTAACCGTGCTTCTGG
ACCCCAGATTCCCACGATGGACACCAGGAGGGGAAGCTGCATATGCTGGACCATTAACCACATGG
TCTTTTTACTGCCACCGGGGAGGGCTCCGCGGGTAATGCCCATTGTCTATGCACGTAGCTATTGT
AGGAAAATGCCACCAACGGTGTCCATGGCGACGGAAAAATATTGT
Found at i:115845 original size:24 final size:24
Alignment explanation
Indices: 115791--115845 Score: 74
Period size: 24 Copynumber: 2.3 Consensus size: 24
115781 AGAGTAGAGG
* *
115791 AGCATACGGAGGAGCATACGGAGG
1 AGCATACGGAGGAGCATACGAAGC
*
115815 AGCATACGGAGGAGCATATGAAGC
1 AGCATACGGAGGAGCATACGAAGC
*
115839 AGTATAC
1 AGCATAC
115846 AAAACAACAT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.36, C:0.16, G:0.35, T:0.13
Consensus pattern (24 bp):
AGCATACGGAGGAGCATACGAAGC
Left flanking sequence: Indices 115291 -- 115790
ACACCGCCGGCGATCTGCCCCACCACCGCCGCGGGCTGTCGTCGCTGCTACAGCTGACACAGATG
GCGGCCGCCGACGCTGCTGCCATCGTCACGGCGCCGCCCACGGTGCGACGGCTGTCGCTGAACCG
CCTGGGCGCCTACTCGCCCAAGATCGGCCCCCAATTGGGGGTGCACAAGCCGGTGCATTTCCACA
GCAACGGCGTGCACCAGGCGCTTGCCAATGGCGACATTGACGCCGTGCTTGGGCCTGCGCTACCG
CTAGCGGTGGCGCCCGAGCGGTTGGCGGACCCCCACCAGGACATCTACGACATGGCGTTGAGCCA
GGACATCCCTCCGCTTGACTTTAACCCGGGCCAGGGGCTTACGGTGGAGGGTCTTTCCCTCGATC
TCTCCCCAGACGACGGGTGGAGCTTTACTGTAGGCAAAGAGGGCTACTAATCACGACATATGGGA
ATGGGTTTGTAATATAAGAGGACACAAACTGGAACAGAGTAGAGG
Right flanking sequence: Indices 115846 -- 116345
AAAACAACATACGATGGGCGTGGCAGCCCGCATGATATTACTCATATTTCGTAATGCTTACGCTT
ATCAATATTAGTCATACGTTTCACCTCGTAAATGTGCAACTCCGTGACTAAACTCGCGGTCAGGC
TCGGCTCAACCGTTGGCCGTGTCGGTGGCGAGTGACCTCGGGCTTGGCAGGTTGAGGCGACGGCA
GGTGCACTCGGTGGCTGGTGACGCTGCCCACCGTTAAGCCCATCTCGATTAGGAAAAATTATGCA
GTCGGAACAAGAATCGCCTGATGCCGAAATCAAGGTCTAACCGTGCTTCTGGACCCCAGATTCCC
ACGATGGACACCAGGAGGGGAAGCTGCATATGCTGGACCATTAACCACATGGTCTTTTTACTGCC
ACCGGGGAGGGCTCCGCGGGTAATGCCCATTGTCTATGCACGTAGCTATTGTAGGAAAATGCCAC
CAACGGTGTCCATGGCGACGGAAAAATATTGTAGCAAATCCACCG
Found at i:123185 original size:34 final size:33
Alignment explanation
Indices: 123138--123233 Score: 106
Period size: 34 Copynumber: 2.8 Consensus size: 33
123128 AACACGTTTT
* * *
123138 CACCCTTACCACCTTTCTACCATTTTCACCTTATC
1 CACCATTA-CACCTTTCTACCA-TTCCACCCTATC
123173 CACCATTACACCTTTTCTACCATTCCACCCTATC
1 CACCATTACACC-TTTCTACCATTCCACCCTATC
*
123207 CACCATTCCACCTTATC--CCATTCCACC
1 CACCATTACACCTT-TCTACCATTCCACC
123234 TGACCACTTC
Statistics
Matches: 55, Mismatches: 4, Indels: 7
0.83 0.06 0.11
Matches are distributed among these distances:
32 10 0.18
33 2 0.04
34 27 0.49
35 16 0.29
ACGTcount: A:0.22, C:0.46, G:0.00, T:0.32
Consensus pattern (33 bp):
CACCATTACACCTTTCTACCATTCCACCCTATC
Left flanking sequence: Indices 122638 -- 123137
GCTGGTACCGCATTTTTAGGGTCGACATCCGGCTCAGAAGAGGAGGGGCTCTGACGTGCGCACAC
AATGGTCCTTTTCGAGACAGCTGCAATCGATGGGCTCACGTGCAGGTTATCAGCCGCGGGCTTTG
GAGCGCGGGGCAGTGGGGTGGAAGCAAAGAGGGGTAGCAGGTGTGGTAGCTGGCGGGGTGGTTGT
TGGGGGATCGGCGGTCATGGGTGAAACGAAATCATGCGGTAACCAAAAGGGTACGTGCCCTGGCT
GCCGTTGGAGAAGGTTGTCAAGAAGATTACGAGGTCAGGCCACCCAAGGCGTGTCAGGGTGTCTA
GGTAACGAACACGTTGGCTGGCGATAAGCCTGAGATTAATAGATTTGCGTTATGGCAACATGATT
AATAGAATTGCCTGTTGGCGCCCGCCATAACTGTGGCGGGGAGCTACTTGAGTGGTGTTATTATC
TTGGCGGTAGCTATGGTCTGTATCTATAACCATCAAACACGTTTT
Right flanking sequence: Indices 123234 -- 123733
TGACCACTTCTCACCTATCTCACATCTCACCCTATATACACTCTGCACCACCATGGCCGACCTCC
AGCGCCAGGCCATCGAGCAGCTCATGGGCCGCGAGGCGCTCCATCTGGACGGCCGTCGCGGTCGT
CCACCCACAGACTTCACCTCTCTGCGGGTGTGCAAGTCGTTCCTCGTCGGAACGTGTCCCCACGA
CCTCTTTGTCGGGACCAAACAGGACCTTGGAAAGTGTCCCCAGCTCCACCTCGAGAAACACCGGT
TGGAGTACCAGCAGCGCGTGGCCCAGGGCCGCCGCTACCCCGAGTTCGAGTACGACTACTACAAA
CACCTCCGCCAGTACATCCAGGACTTGGACACCCAGATCGCGGTGGCGCACAAGCGGTTGGAGCA
CACACCGGAGGAAAAGGAGAAGATTGCTGCGGCGATGCGCGAGCTCGACGTGGCCGACTCCAACA
TTGCGCTCATGGCCCAGGAGATCGAGTGTCTCGTGGCGGCGGGCG
Found at i:123201 original size:17 final size:17
Alignment explanation
Indices: 123146--123234 Score: 94
Period size: 17 Copynumber: 5.4 Consensus size: 17
123136 TTCACCCTTA
*
123146 CCACCTT-TCTACCATTT
1 CCACCTTATCCACCA-TT
*
123163 TCACCTTATCCACCATT
1 CCACCTTATCCACCATT
* * *
123180 ACACCTTTTCTACCATT
1 CCACCTTATCCACCATT
*
123197 CCACCCTATCCACCATT
1 CCACCTTATCCACCATT
123214 CCACCTTAT-C-CCATT
1 CCACCTTATCCACCATT
123229 CCACCT
1 CCACCT
123235 GACCACTTCT
Statistics
Matches: 61, Mismatches: 10, Indels: 4
0.81 0.13 0.05
Matches are distributed among these distances:
15 11 0.18
16 1 0.02
17 43 0.70
18 6 0.10
ACGTcount: A:0.21, C:0.45, G:0.00, T:0.34
Consensus pattern (17 bp):
CCACCTTATCCACCATT
Left flanking sequence: Indices 122646 -- 123145
CGCATTTTTAGGGTCGACATCCGGCTCAGAAGAGGAGGGGCTCTGACGTGCGCACACAATGGTCC
TTTTCGAGACAGCTGCAATCGATGGGCTCACGTGCAGGTTATCAGCCGCGGGCTTTGGAGCGCGG
GGCAGTGGGGTGGAAGCAAAGAGGGGTAGCAGGTGTGGTAGCTGGCGGGGTGGTTGTTGGGGGAT
CGGCGGTCATGGGTGAAACGAAATCATGCGGTAACCAAAAGGGTACGTGCCCTGGCTGCCGTTGG
AGAAGGTTGTCAAGAAGATTACGAGGTCAGGCCACCCAAGGCGTGTCAGGGTGTCTAGGTAACGA
ACACGTTGGCTGGCGATAAGCCTGAGATTAATAGATTTGCGTTATGGCAACATGATTAATAGAAT
TGCCTGTTGGCGCCCGCCATAACTGTGGCGGGGAGCTACTTGAGTGGTGTTATTATCTTGGCGGT
AGCTATGGTCTGTATCTATAACCATCAAACACGTTTTCACCCTTA
Right flanking sequence: Indices 123235 -- 123734
GACCACTTCTCACCTATCTCACATCTCACCCTATATACACTCTGCACCACCATGGCCGACCTCCA
GCGCCAGGCCATCGAGCAGCTCATGGGCCGCGAGGCGCTCCATCTGGACGGCCGTCGCGGTCGTC
CACCCACAGACTTCACCTCTCTGCGGGTGTGCAAGTCGTTCCTCGTCGGAACGTGTCCCCACGAC
CTCTTTGTCGGGACCAAACAGGACCTTGGAAAGTGTCCCCAGCTCCACCTCGAGAAACACCGGTT
GGAGTACCAGCAGCGCGTGGCCCAGGGCCGCCGCTACCCCGAGTTCGAGTACGACTACTACAAAC
ACCTCCGCCAGTACATCCAGGACTTGGACACCCAGATCGCGGTGGCGCACAAGCGGTTGGAGCAC
ACACCGGAGGAAAAGGAGAAGATTGCTGCGGCGATGCGCGAGCTCGACGTGGCCGACTCCAACAT
TGCGCTCATGGCCCAGGAGATCGAGTGTCTCGTGGCGGCGGGCGA
Found at i:124104 original size:14 final size:14
Alignment explanation
Indices: 124083--124135 Score: 61
Period size: 14 Copynumber: 3.6 Consensus size: 14
124073 CCTGCGGCTC
124083 CAGCCACTACAACA
1 CAGCCACTACAACA
* *
124097 CGGCCACTGTTCAACA
1 CAGCCAC--TACAACA
*
124113 CAGCCACTACGACA
1 CAGCCACTACAACA
124127 CAGCCACTA
1 CAGCCACTA
124136 GTACGACACA
Statistics
Matches: 32, Mismatches: 5, Indels: 4
0.78 0.12 0.10
Matches are distributed among these distances:
14 20 0.62
16 12 0.38
ACGTcount: A:0.34, C:0.42, G:0.13, T:0.11
Consensus pattern (14 bp):
CAGCCACTACAACA
Left flanking sequence: Indices 123583 -- 124082
TTGGACACCCAGATCGCGGTGGCGCACAAGCGGTTGGAGCACACACCGGAGGAAAAGGAGAAGAT
TGCTGCGGCGATGCGCGAGCTCGACGTGGCCGACTCCAACATTGCGCTCATGGCCCAGGAGATCG
AGTGTCTCGTGGCGGCGGGCGACATTGTCGGGGCGGTGAGACAGGGGGCCGAGCTCGACCGGCGC
CAGGCGGAGCGGGCCCAGTTATTTGAGACCGCACGCAATCTTGCCGAGAACGTGGGCCAAACGTC
ACAGCAGAAGTTGCAGGTGTGCGAGGGGTGTGGGGCCTACTTGTCGCGGTTGGACTCTGACAGGC
GTATTGCCGACCACTTGATGGGGAAGATCCATCTTGGGTATGTGCAGATGAGAAAGGCGTACGAG
GAGTTGCATGCGAAGTTTGAGAAGAGATAGGCGGTGTGGGTTTGGAATAATTGATGAGTGTACAA
CCGGTCTCTGGTGAGACTTTGTTCTTGGCTAACAACCTGCGGCTC
Right flanking sequence: Indices 124136 -- 124635
GTACGACACAACTTTTACAACTTTGGCACTAGCACTACCAGTTGTACGACTCGACTAGTACAAAA
CTAGTGCGGGTTGTCACTGGTACAACTCAGTTCCTGGTACCCCCAGCCATCCCATGACTACCAAC
ACCTTGCACATACCCAGTTACTGGTACACCAAGTCTCCTATGACTACTAACACCTTGCACATACC
CATTAACTGGTAAGCATGGGGCCATTTAGCTATTAAAAGCCCCCTCATAGTTCATAGTCTCGAAT
CGATACACACTATAATCATCCCTACTTCCACCTCCACTGGCCTCCATCCACCTTCTCATTGTCTT
ATTGTCTATGAATAAATATTACAACATTCTGTGGATGCTGTCGTCCTTAAACTGGTCCAAGTCCT
TGAGGTTGGCCCACCACTTGAACAAGAACTTCTCGCAGATCAACTTGAACCACGGGGTAAACACA
AGCGAGTCGTCGGCAAACATCGCCTTGAGCTCGGCCTCCAGCACC
Found at i:125668 original size:11 final size:11
Alignment explanation
Indices: 125654--125707 Score: 67
Period size: 11 Copynumber: 5.1 Consensus size: 11
125644 ACCTCCTGCC
125654 ACTCTCCCACT
1 ACTCTCCCACT
125665 ACTCTCCCACT
1 ACTCTCCCACT
*
125676 ACTCTTCCACT
1 ACTCTCCCACT
* *
125687 AC-CTCTC-GT
1 ACTCTCCCACT
125696 ACTCTCCCACT
1 ACTCTCCCACT
125707 A
1 A
125708 TCGCTTTCCC
Statistics
Matches: 35, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
9 3 0.09
10 7 0.20
11 25 0.71
ACGTcount: A:0.19, C:0.50, G:0.02, T:0.30
Consensus pattern (11 bp):
ACTCTCCCACT
Left flanking sequence: Indices 125154 -- 125653
CTTGATCTGCTCGGCGTCGTGCCCGGCAAACAACGCGAGGTCCTCCTTTGAGCTCAGCTCGGAGC
GGGCGATGCCCAGCACCTCGGCCAACGGGGTCACTTCGTCCCACTTGGCGACAATGTCCTCGGCT
TTGAGGTTCTTCACCACGGTCTCGTAGTCGGTCATGCTAACAGGGGGTAGATATACGGACTTTTT
CCAGGTTAAACTCGCACTCGTCGTATAGCGCGAGAAGGCGGGAAAAGAAACTGGATCGGGCGGGC
ACGTAACCGATTATACGAAGGATGGTGGAGAACAATCTGGGCTCATGTGGGAAATGGTCGGATGG
CCGAGAGAAAATAAAATACAGCAGAATGGTGCAAAGAGTCAAAAGTAACATTACAAGAGAGGCTA
GAGTCCATCGGTTGAGCATTAGCGGTTACAGACGTGTCGGACAGTGTTAAACGCGTACCCCACCA
CTCACTACTTTACAACAACTGCTTATCTCCGCGTTACCTCCTGCC
Right flanking sequence: Indices 125708 -- 126207
TCGCTTTCCCTTCCACCCACCCCACTACATTCACCCACCCCTCACACGAAAATAGATCGCGTCGA
GTCATCGCCTCAACGGTCAGGATGAGACGTTACCGGATCAGTAGCCACCGAACTCTAAATTCACC
AAAGTAAACACCAAAACCTAAAGTCAACCGCGTCTACAACGCGTCTACACCCCCACCAACCCCCT
CACGCCCCCCACACCCGCCCGCCGTGTCCTGCTTGCAGCCGTGGTGATCCCACTGCCCGTGCGCA
CGCGCAGTGAAAAATTTCCATTTTTTGGACAACACAACCGTTTACCATGTCCGACAAAGGTAGCT
CCCCTGCGCCGCAGAGCACTCGCAAGCACATCAAGCGCCCCGACAGCGACGCCCACAAGGCCAAG
GTGGCGGCGGTGCAGCAGGAAATCAAGCAATTGGACGCTGAGTCCGCCAAGTTGACGGCGGAAAT
CGCCAAGTTGCAGATCGACCAGCTGGTGATGGACAAGCGCAACAA
Found at i:127462 original size:29 final size:29
Alignment explanation
Indices: 127423--127527 Score: 192
Period size: 29 Copynumber: 3.6 Consensus size: 29
127413 TTAGTTTTAC
*
127423 ACTGTGGTATTGGTAACTTTTATTGGTTT
1 ACTGTGGTATTGGTAACTTTCATTGGTTT
127452 ACTGTGGTATTGGTAACTTTCATTGGTTT
1 ACTGTGGTATTGGTAACTTTCATTGGTTT
127481 ACTGTGGTATTGGTAACTTTCATTGGTTT
1 ACTGTGGTATTGGTAACTTTCATTGGTTT
*
127510 ACTGTGGTCTTGGTAACT
1 ACTGTGGTATTGGTAACT
127528 GTGGTTTCGC
Statistics
Matches: 74, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 74 1.00
ACGTcount: A:0.17, C:0.10, G:0.25, T:0.48
Consensus pattern (29 bp):
ACTGTGGTATTGGTAACTTTCATTGGTTT
Left flanking sequence: Indices 126923 -- 127422
TTGGCGTACTTTGACCCCGAGTACGTCAAGCCCGCGGCGGCGGACCCGTTGAAGAATGGTGGGTT
CACCACCCTGAAGTTGGCTGCGCGTACCGTCGAGATGCCCGCGGACATGGTGGTGGTGTCCAAGA
AGCAGGAGGAGTTTGTGCCCACCCTGAAGCTGAAGAAGGGCAAGAAGGCCAAGGGCAAGTCCAAG
AACTTCACCGTGGACCCCGACATCATCACCGAGTTGCTGGAGTTGTCGATTCCCTTCCCCACCTC
GCAGGAGCAGGTGCCCGAAACCATCAAGGTGTTGAAGGAGACGCTTGCGGCGTTGCAGGACAAGC
AGGAGGAGCAGACCCAGGTGAACATCGAGAAGGCCAAGGCCAAGATCGCCACCTTGGAGGCGGAC
GACCTCGACGACGAGGACGACGAGTAGATTAATGCACATTACGTACGAATAGAAACGATTTAGGT
GACGGGACGAAGTGGGGAAGAGTAAATGTGGGTTCTTAGTTTTAC
Right flanking sequence: Indices 127528 -- 128027
GTGGTTTCGCTGACTCTTTCGGACGGCTGCAAATCGGGTTGTCTGCAGGACTCCGGGCTTCGTCG
ACTCCGACGGTTGCGCCATACGAAAAGTGTCTGGGGTGGACGGCGCCAAGGGAAGGCGCCACGGG
GTGGTGTAGGGGGTTCAGAGGTGATACAAACTGTGGTGATCAGACTACCATTGGTCCTGGCAGCA
CTTTTCACCCGCACTTCTGTTCCCCGCTTTTTCCCGGGAGTACAAGTGCGATGGGCCACCACCCA
CCCTGCGGTGTCTGCTGACCTCTGCCACCACTACCACGGCGACCACGGCCACCACTACCACCACC
CCCGTAGCCCTCTTCCCCCATCTCCCCTCTCCGGCCACCCCCGGCGAGGCGTTTTTTCTGACTCG
GCCGCTCCCGGACTCTGCATACAGCCCGATGGTAGCAGCGCATTCAAAAGTACGCCAAACCCACC
TCGAAGCCATGTTCCGCCAAAAACAGTTGATCCGGGGGCTCGCCA
Found at i:129995 original size:13 final size:13
Alignment explanation
Indices: 129977--130031 Score: 87
Period size: 13 Copynumber: 4.4 Consensus size: 13
129967 AGTTAAATCT
*
129977 TCCTAACGCAATC
1 TCCTAACGCAAGC
129990 TCCTAACGCAAGC
1 TCCTAACGCAAGC
130003 TCCTAACGCAAGC
1 TCCTAACGCAAGC
130016 TCCTAACG--AGC
1 TCCTAACGCAAGC
130027 TCCTA
1 TCCTA
130032 CTTTCTTTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
11 8 0.20
13 33 0.80
ACGTcount: A:0.29, C:0.38, G:0.13, T:0.20
Consensus pattern (13 bp):
TCCTAACGCAAGC
Left flanking sequence: Indices 129477 -- 129976
GTGCGTGTACCGAGTTCCTCCAAATTAGCTGGTGAAGGTGCTTGAATCAACTGGTGGACGATGAG
ACTAGCACCTCTGCTTTCCTCACACCCCTACTACCCCCACCATTACTCCACCTTCTTCTAGTTTA
CCTCTACAGTTGCTGTGACAGTTAACCCACTTTAGATTACAAAGTGCCAATATTAGTAGATAAAG
TACACAGCACGGGTAAAACACACTGAAAAAAACAATTCTCAAACAGTTTTAACGGTCAATTGGTC
GGGATGGGTCCAGTGTTGACCTTCTTCAAACTTCCCCATAACCAGTTATATACAGGATCCACACC
CCAAACAAAGATGGTCCCAACGTAGTCCCCCCACAGCCACCTGGAAAACTCGAAAAATCCACCCT
GTGTGTGTATCGTCTCCAAAACCATACCTGTTCATTTTCAAACCAATTCCAGCCCTATGAACTCA
AATACAAGCCACCACTATCCCCTTTTTGAAACTATAGTTAAATCT
Right flanking sequence: Indices 130032 -- 130531
CTTTCTTTATTACACCGTATACTCCTGGTCTATTCATTACCTAACCCAGTGTCCATGATCAATGC
CTATCGCCGCCGCGTCAGCGACTCCCGCCGCGGGTAGTACGGGTACTGCTCCGGGTACGGGTACT
GCTCCATGTAGTACTCCTCCTCGGGCATCTGCGGCGAGTAGAGGTGCTCGTGGCTCTTGGCCAAG
TACTGCGCCATCACCTGCGACCCAGGCGGCCCCCGGAAGCCCTTGTAGCGGCCCGGCGGCGGGTA
CGCAGGCTGGTAGGGCAGCGGCGGCGCGTACGGCTGCTGGTGGCCGATGTACGGCAGCGGCACCG
GCGACGGGTAGTACAGGAACAGGTTGGTGCGCAGCAACGCGTGCGGCGTCTGCGGGCGGTACCCG
TAGTACGGCTGCGCGTGCTGGACGTAGGGCAGCGTCTGGTAGTACTTGTTGTACAGCTGCAACAG
CGCCAGGCTCAGGTTGCGCAGCATCTTGGGCCGGTACCCGGCCTT
Found at i:130153 original size:21 final size:20
Alignment explanation
Indices: 130129--130166 Score: 62
Period size: 18 Copynumber: 2.0 Consensus size: 20
130119 TCCCGCCGCG
130129 GGTAGTACGGGTACTGCTCC
1 GGTAGTACGGGTACTGCTCC
130149 GG--GTACGGGTACTGCTCC
1 GGTAGTACGGGTACTGCTCC
130167 ATGTAGTACT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 16 0.89
20 2 0.11
ACGTcount: A:0.13, C:0.26, G:0.37, T:0.24
Consensus pattern (20 bp):
GGTAGTACGGGTACTGCTCC
Left flanking sequence: Indices 129629 -- 130128
TAACCCACTTTAGATTACAAAGTGCCAATATTAGTAGATAAAGTACACAGCACGGGTAAAACACA
CTGAAAAAAACAATTCTCAAACAGTTTTAACGGTCAATTGGTCGGGATGGGTCCAGTGTTGACCT
TCTTCAAACTTCCCCATAACCAGTTATATACAGGATCCACACCCCAAACAAAGATGGTCCCAACG
TAGTCCCCCCACAGCCACCTGGAAAACTCGAAAAATCCACCCTGTGTGTGTATCGTCTCCAAAAC
CATACCTGTTCATTTTCAAACCAATTCCAGCCCTATGAACTCAAATACAAGCCACCACTATCCCC
TTTTTGAAACTATAGTTAAATCTTCCTAACGCAATCTCCTAACGCAAGCTCCTAACGCAAGCTCC
TAACGAGCTCCTACTTTCTTTATTACACCGTATACTCCTGGTCTATTCATTACCTAACCCAGTGT
CCATGATCAATGCCTATCGCCGCCGCGTCAGCGACTCCCGCCGCG
Right flanking sequence: Indices 130167 -- 130666
ATGTAGTACTCCTCCTCGGGCATCTGCGGCGAGTAGAGGTGCTCGTGGCTCTTGGCCAAGTACTG
CGCCATCACCTGCGACCCAGGCGGCCCCCGGAAGCCCTTGTAGCGGCCCGGCGGCGGGTACGCAG
GCTGGTAGGGCAGCGGCGGCGCGTACGGCTGCTGGTGGCCGATGTACGGCAGCGGCACCGGCGAC
GGGTAGTACAGGAACAGGTTGGTGCGCAGCAACGCGTGCGGCGTCTGCGGGCGGTACCCGTAGTA
CGGCTGCGCGTGCTGGACGTAGGGCAGCGTCTGGTAGTACTTGTTGTACAGCTGCAACAGCGCCA
GGCTCAGGTTGCGCAGCATCTTGGGCCGGTACCCGGCCTTTTTCTTTTGCCGCTGCTTGCGGCGC
GGCGGCTGCTGGGCCGGAGCGTCGTCCAGGTCGATGATGATCAGCAACTCGTCGTCCAGCGCCTC
GAGCACCAGCTCTTCGGCGTCACCGTCGAGCTCGGGCGCGTCCAC
Found at i:132247 original size:15 final size:15
Alignment explanation
Indices: 132227--132273 Score: 94
Period size: 15 Copynumber: 3.1 Consensus size: 15
132217 GGTGGGAGTT
132227 AGGCTGGGAAGGGCC
1 AGGCTGGGAAGGGCC
132242 AGGCTGGGAAGGGCC
1 AGGCTGGGAAGGGCC
132257 AGGCTGGGAAGGGCC
1 AGGCTGGGAAGGGCC
132272 AG
1 AG
132274 ACGGGTGGTT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 32 1.00
ACGTcount: A:0.21, C:0.19, G:0.53, T:0.06
Consensus pattern (15 bp):
AGGCTGGGAAGGGCC
Left flanking sequence: Indices 131727 -- 132226
GGACCTGGCGCCATCGGAGCGGGCATCCCGGGCACGTAGCCGTAGGTGCGCGAGCTGGTGACGCT
CAGCACGCCTGCGCCCACGCCCAAGAACAGGCCCAGCAGCAGCAGGCGGTGGGGCAGCTGGGCCG
CCGGTGGCTGGAGCGGAGGCAGGATGTGGCCCACCAGCGACGGCGGCAGGATCACCTCGCGGGTG
GCGCCGAGCTCGTACATCTTTTTCTTGTCGTCGGGATACGGCAACAGGTTGAGCTGCGGGTGGTG
GTGCGACGGCAGGGTGGCGGGCGACGGGTCCAGAGGCGGCAGCGGCTCCAGGGTGTGCAGTTTCG
GGGGTGGAGGCGACACGGGGGCCTCGTGGGTGGGCGGGGGCGACGCGGGCGGGGTGCCTTCGTCG
AGCGGGAGCGGGCGCGGGTGGGGTCTCGACGCGGGTCCGAGCACTTCCTTGGGGTGTTTGGGCTT
GCGCCTGCGGGAGTCTGGGTGGGATGGGTGGGGTGGGTGGGAGTT
Right flanking sequence: Indices 132274 -- 132773
ACGGGTGGTTGGACTCGAGCTTAGACCGGACAGGTTCAGACTGGTGGGTCTGAGGCTGAACGGAT
TCAGAGTGAGCCTGGTGTTTGGCCTGGGGCTTAGCCTTGTCGGACTGAGACTGAGCGTCTTTCGA
GCCAGACGGTAGCGACTTTGGATTCGCCTTAGACTTTAGCTCCTTCGGACCAGAGTTCAATCGCA
CGTCCTCGTTTTCCACGTTTTGGTCATCGTTTTCGTCATCTTTTTCCTCATCTTCCTTTTCCTCC
ACCTTTCCCTCGTCTTCCCCTTCTCCCTCTTCGTTCCCACACGCTTCGCCCACGCCATTCCCGTT
GGCGTGCTCCACTGGTGTGCGGTCGCACCGGTCCCGCGCAAACCCGGCCGCCACAAACTTGATAT
CATAGCGAAACTTCAGCTTACGAGGAATGCCGCTCTCCGACCGCTGGCGGTCGTACTCGATGCGC
TTGCTGTAGAACTCCACCATCTTGATCGCCAGGTCGATCAGCGTG
Found at i:136832 original size:34 final size:34
Alignment explanation
Indices: 136789--136855 Score: 118
Period size: 34 Copynumber: 2.0 Consensus size: 34
136779 TGTGGCGCCA
136789 ACTGTGTTGA-TTTAGTCACTGTGTTGATTTTGTC
1 ACTGTGTTGATTTTA-TCACTGTGTTGATTTTGTC
136823 ACTGTGTTGATTTTATCACTGTGTTGATTTTGT
1 ACTGTGTTGATTTTATCACTGTGTTGATTTTGT
136856 AGTGTATCAC
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
34 28 0.88
35 4 0.12
ACGTcount: A:0.15, C:0.10, G:0.22, T:0.52
Consensus pattern (34 bp):
ACTGTGTTGATTTTATCACTGTGTTGATTTTGTC
Left flanking sequence: Indices 136289 -- 136788
TGGATGCACAGCAGTATAAGTTGGAGTCGATCGTCGCCAATTTTACAATCCACAGCATGCTTTCG
ATTGAATTGGTTAGAGTCGTCTACAAACTAGAGCTGGTGGTGTCCGTGTGCCTGCTCACCGGGTT
GATCATGATTATCTTGCCCTTGGTGCTTTTGTTTTTGGCTGACGTCGGTGGTTACATCTACTTGA
AGTACACCAACAAGATCAGCGTTTGATCGCCTAGCGGGGTCGGGGGGTGTGCCTGGTGCATAGCC
CGCCGCAAGTGTCCCCTTTATTTATTTATTGGGTTTTGGTTTTAATAGATAAGGATTTTTACTTC
CGGTAGAACGTGGTTGCTTGTATGCAGGCGGAGTCAGGGTTTGGTTAACCGTGGATCAACTTGTT
TTTCTTTTTTCTGCTTTGGCACATAGGACAAAGTCGTTCCAAAGGACAACAGATAGGGGCGATAC
GAGGTAGGTCAAGGCGGGATGGGAGCAATCATAATTGTGGCGCCA
Right flanking sequence: Indices 136856 -- 137355
AGTGTATCACCACGGAGGGTATCCCTCCCCCCTTCCCATGATGGTTTCAAACTAACTATCACTCT
GAAACAAGATTCCAAACACGGTTATCTAGGCCGTTGCAAATTACTTGACACGACATCACAGGGCG
TCAGGGGTGTGTGTCCAAAGGGGCTTTGGACGGTATGTCTCAACCGTCAATGATTACGTCACAAA
GCGGTGGTGGCCCACGTTGCCCTAACTGTAGCCACCGGCTACGACACGGTTGCTGGTGCGAGCAA
CACGCGTCCGTCACACGACCAAGTGCCGTTTTGCCCGAACCTAAATAACCAGATCTTTCAGGTTC
ACCTTTTGTGCTCATATGCACTTGGAACCGCTTATCGTTACGCGCGCACCCAGCCTCCGCCATTG
TCTCTGGCAAGGGGTACCCTTTCCATGAGTTCATAGTGCATTACCGACGACTTTGACTTGCTTTC
TCCACACCCAGGTTCCTTTGAGTACCGGCGATCGCTCACGAGTTC
Found at i:136853 original size:17 final size:17
Alignment explanation
Indices: 136789--136853 Score: 105
Period size: 17 Copynumber: 3.8 Consensus size: 17
136779 TGTGGCGCCA
136789 ACTGTGTTGA-TTTAGTC
1 ACTGTGTTGATTTTA-TC
*
136806 ACTGTGTTGATTTTGTC
1 ACTGTGTTGATTTTATC
136823 ACTGTGTTGATTTTATC
1 ACTGTGTTGATTTTATC
136840 ACTGTGTTGATTTT
1 ACTGTGTTGATTTT
136854 GTAGTGTATC
Statistics
Matches: 45, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
17 42 0.93
18 3 0.07
ACGTcount: A:0.15, C:0.11, G:0.22, T:0.52
Consensus pattern (17 bp):
ACTGTGTTGATTTTATC
Left flanking sequence: Indices 136289 -- 136788
TGGATGCACAGCAGTATAAGTTGGAGTCGATCGTCGCCAATTTTACAATCCACAGCATGCTTTCG
ATTGAATTGGTTAGAGTCGTCTACAAACTAGAGCTGGTGGTGTCCGTGTGCCTGCTCACCGGGTT
GATCATGATTATCTTGCCCTTGGTGCTTTTGTTTTTGGCTGACGTCGGTGGTTACATCTACTTGA
AGTACACCAACAAGATCAGCGTTTGATCGCCTAGCGGGGTCGGGGGGTGTGCCTGGTGCATAGCC
CGCCGCAAGTGTCCCCTTTATTTATTTATTGGGTTTTGGTTTTAATAGATAAGGATTTTTACTTC
CGGTAGAACGTGGTTGCTTGTATGCAGGCGGAGTCAGGGTTTGGTTAACCGTGGATCAACTTGTT
TTTCTTTTTTCTGCTTTGGCACATAGGACAAAGTCGTTCCAAAGGACAACAGATAGGGGCGATAC
GAGGTAGGTCAAGGCGGGATGGGAGCAATCATAATTGTGGCGCCA
Right flanking sequence: Indices 136854 -- 137353
GTAGTGTATCACCACGGAGGGTATCCCTCCCCCCTTCCCATGATGGTTTCAAACTAACTATCACT
CTGAAACAAGATTCCAAACACGGTTATCTAGGCCGTTGCAAATTACTTGACACGACATCACAGGG
CGTCAGGGGTGTGTGTCCAAAGGGGCTTTGGACGGTATGTCTCAACCGTCAATGATTACGTCACA
AAGCGGTGGTGGCCCACGTTGCCCTAACTGTAGCCACCGGCTACGACACGGTTGCTGGTGCGAGC
AACACGCGTCCGTCACACGACCAAGTGCCGTTTTGCCCGAACCTAAATAACCAGATCTTTCAGGT
TCACCTTTTGTGCTCATATGCACTTGGAACCGCTTATCGTTACGCGCGCACCCAGCCTCCGCCAT
TGTCTCTGGCAAGGGGTACCCTTTCCATGAGTTCATAGTGCATTACCGACGACTTTGACTTGCTT
TCTCCACACCCAGGTTCCTTTGAGTACCGGCGATCGCTCACGAGT
Found at i:140130 original size:30 final size:30
Alignment explanation
Indices: 140064--140159 Score: 101
Period size: 30 Copynumber: 3.3 Consensus size: 30
140054 GATTCTCATC
*
140064 CTTCGACTCTTA-T-T-CTT-GGACCTTTTC
1 CTTCGACTCTTACTATCCTTCGG-CCTTTTT
*
140091 CTTCAACTCTTACTATCCTTCGGCCTTTTT
1 CTTCGACTCTTACTATCCTTCGGCCTTTTT
* * **
140121 CTTCGACTCTTACTATCTTTCGACCTTACT
1 CTTCGACTCTTACTATCCTTCGGCCTTTTT
140151 CTTCGACTC
1 CTTCGACTC
140160 CTATCCTTCA
Statistics
Matches: 58, Mismatches: 7, Indels: 5
0.83 0.10 0.07
Matches are distributed among these distances:
27 11 0.19
28 1 0.02
29 1 0.02
30 43 0.74
31 2 0.03
ACGTcount: A:0.14, C:0.33, G:0.08, T:0.45
Consensus pattern (30 bp):
CTTCGACTCTTACTATCCTTCGGCCTTTTT
Left flanking sequence: Indices 139564 -- 140063
CTTGTCGGGCCAGGACCGCCAGCTTGCCTGGTTCAACCTGGGGTTCCAGACGTGTCTGAAGGTGG
GGCGGATCTCGCTGGAGGGCGACTTCAACCGCGGGTCGCGTTTCAAGTGGATCTCCAACCTCAAG
GACTTCAAGGTGTTCTACGAGGGGCCCCTCCGCATCGAAGCCATTGTTGTGCCGCCTCATTTGGA
CCCTCAGGACCAAAGACACCCCAACGACGAGGGCGAGGAGAGCGGCAACGGGTGGTTCTGGGAGC
GTGGGTACTGTTTGCTGTACATGTGGTGTGCCTACTCGCAGGCCGGTGGTAAGAGCTGGAGCGAC
GGCAAGGAGACCGACAACACTGTCTACGGTGAGTACGTGGAGGTCGACCCGGCCACCCAGGCGTT
GTACCGGTACTTGGGTGACACGTGGTTTGGCAACGAGTAATTATAGAGCCTAGCATAGTAAATAG
CCAAATGCACCTGATACTTTATCAGTACTTTGATCGATTCTCATC
Right flanking sequence: Indices 140160 -- 140659
CTATCCTTCAACCCTTTCTTAATCTTCAACTCTTTACCCCATCCCTAATCGTTCTACCCTACCTC
CATCTACCCCTAAATCCCTGTGTTTGTTCCCTATGTGTTCTTTTCTTTCCGTAATGCCTGGAGCC
GAGCCTGAAAGTCCTTCTTGGCGTCTTCGTTGCCAAACTCGATCTCCACGTCCGACTCGTCGGTC
GAGAACCCCAGATCCAAGCTGATCACCTTGTTGAACGGCAGCGCGTGCGTCAGTGACAGGGCGGA
GTTCAATGCCTTCGTGAACGAGTCTGCGGCCAGCGCCGTCGCCTGGAGGCGCTGGTGGTTGCGGA
GCAGGGCTACGGTGGCCAGCCACTTGTCACGCTTCTGACGACGCTCCTCGGGCAGCTTCGCGAGC
TGCTTCTCCTTCTCCTTGGCGCTCAGCAAGTTGTAGAGCTCCTGGATGTCGTGGGTGCGCTTCCG
CTTGGGCAGCACGTACACTCCATCGTCTGGTCTCTCGTTTGCGGG
Found at i:144622 original size:12 final size:12
Alignment explanation
Indices: 144592--144635 Score: 61
Period size: 12 Copynumber: 3.7 Consensus size: 12
144582 GGCAGCTTGC
* *
144592 GGGGCAGCGGCT
1 GGGGCAGCAGCG
*
144604 GGAGCAGCAGCG
1 GGGGCAGCAGCG
144616 GGGGCAGCAGCG
1 GGGGCAGCAGCG
144628 GGGGCAGC
1 GGGGCAGC
144636 GTTCCCAAAC
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
12 28 1.00
ACGTcount: A:0.16, C:0.25, G:0.57, T:0.02
Consensus pattern (12 bp):
GGGGCAGCAGCG
Left flanking sequence: Indices 144092 -- 144591
CCCCGTTACCCGCACCACCACGGTTGTCAGTGACGGCAGGGGAGGGAGCAGAGCCCGCGCTGGAA
CCACCATTAATGGAACCAGTCAGAGCAGGGGTGGCGGGCTGAGGCGACTGGGCGTTCGAAGAGCT
CGACGAGCTCGACGAGCTACCACCGAAGAGGCCTCCAAACAAGTTGGAGAAGAACCCTCCGGAGG
AGCTCTTGGGAGACGAGGCTGGGCTCGTCTGGGGAGCCTGGGAGGCAGGCTGGGCAGCAGGCTTG
GTGGCAGGAGCCGCCTGAGCCGGAGCGGTGGTCTGGGTGGTGGTGGAACCGCTCCCCCCAAAGAG
GGAACCGAATAAGTTGCCGAAAAAGCCCTTCCCTGATGACGCCAGGGAAGAAGCAGGGGCAGCAG
CCGGCTGGGCAGGTGCGGGAGCCACGGAGGGCTTAGCAGCCTGGGCAGCCTGGGCAGCTGGGGTG
GGGGCAGCATACACGGTGTGGTAGATGGTTTGCGGGGCAGCTTGC
Right flanking sequence: Indices 144636 -- 145135
GTTCCCAAACAATTCGTCAAAGAGACCAGCGTCCCGTTTGTGGTCAATGGGCAAAGCACCCACGG
CTGCAAGTAGACCAGCTACTTGCAAGAGGACCAATCCTTCGATAATCTGCATCGGAGCCGAGCTA
AGGAGGGGAAGAAGACTAAGGAGTGGAGTGGAGAAAGGAAAAGAACGCCGGGGCAATCATTATAT
ATAAGCGAGGTTTCAACTATCATTCGCACAATTGTCTACATTCCGATTATTTCCAGATTAGGTAA
ATCTTGGCCTAGTACTGCATGCTATTACGACAGCGGGCGTAGATCGACAAGCCCGTGGGCGGCGT
TGGGGGGTGGAGAAGAGGCTAGGAGGGGTTTTTGATGGACTAATGGTGACTGCTGGCTTTAGTTC
TGCTGTCTACGTGTGGTTGACACGTTGTAAGGCGTGTCTGGGCCCCTCAGTAGCCGTTGGTTCGG
TTAAACTCTTCGGCGATCGCTTAAAAATCTATGCGTCACGGGTAA
Found at i:147642 original size:18 final size:19
Alignment explanation
Indices: 147601--147642 Score: 66
Period size: 19 Copynumber: 2.2 Consensus size: 19
147591 CAGTATGGCA
*
147601 TTTTTCAGTGAGTGGAGAG
1 TTTTTCAGTGAGCGGAGAG
*
147620 TTTTTCAGTGAGCGGAGCG
1 TTTTTCAGTGAGCGGAGAG
147639 TTTT
1 TTTT
147643 GAGCGTAGGG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.17, C:0.10, G:0.33, T:0.40
Consensus pattern (19 bp):
TTTTTCAGTGAGCGGAGAG
Left flanking sequence: Indices 147101 -- 147600
GCCGTTGACACTGTTTTTCATGTTCCGCGACGAGGTGCGCCCCCAGTTGATCCAGGAGAGACAGA
CCAAGGGCGAGGAGCCGTTGCTGAACGTGGAGTTGCTGCAGCTGTTGCTGAAATTGTGGGCCGAG
CTTCTGGATGCGGAGAAGGCCCGTTACAAGGAGCGGTACTCCAAGTTGTGGGCCGACTACCAGAA
GGAGATGGTCAAGTACAACGAGGGCAAGGAGGGCGCTGAGGCTGCGGACACCACGGCCGAGGTGA
CCATCGAGCCCAAGGTGGAGGAGCCCGCGGACGAAGGCGACGACAAGAAGAAGAAGAAGGCCAAG
ACCGAGGGCAAGAAGGAGAAGAAGGACAAAAAGAAGAAGAAGGAAAAGAAGTGACGATCCCCCTG
TGCCTAGATGGCTTGTAATGTTCATGTAATTCTTGATGTATTAAATACCAATTTGTGTGATATAG
ATGCGGTGTAGGGTGGAAGGCTAGGGAGCATTTTTCAGTATGGCA
Right flanking sequence: Indices 147643 -- 148142
GAGCGTAGGGAGCACTTTTAGCATTTAGTAAGCATTGTTGAAATGGAAGAACCCTAGACATTCAA
CAATGAAATGAACCAAAAGCCCTAATCACAATAGTACGTTGGCCACCTTCACGACCATTGTTGTT
CTGACGCGCTGCTATCTCCGATACCGGCTCGATCGCCTTTAGTCTATTGTTCTCGCTCCAGGCGC
GATACGAAAGTCAATCTATTAGATGCGATAAATACTAGTAGCCTAAAAGTTCCCGGAACGCCCGC
CACGCTTCATGCGGTCGACGTGGGCCCGCAACACCTTCTGGCGGTCGCGCAACGACATCTTCTGC
TTGCCCGACACCGCGCGCTTGTGGATAGTCATGATAAAGTTCTTCTTGCGAGCCTTCTCCTTGTT
GGTAGTAGAGTGGGGAGCATCGCGCTTGCCCTTGCGCAGACCGAACTCGCGGTCCTCGCGGCCCT
CCTTGGCGTGGGCAATCCGCTCCTCGCGCAACTGCTTGTACTTGG
Found at i:153001 original size:15 final size:15
Alignment explanation
Indices: 152958--153046 Score: 115
Period size: 15 Copynumber: 5.7 Consensus size: 15
152948 ACAAAGTACC
*
152958 CAAGTCCACCTAGACT
1 CAAGT-CACCCAGACT
*
152974 CAAGTTTACCCAGACT
1 CAAG-TCACCCAGACT
*
152990 CAAATCACCCAGACT
1 CAAGTCACCCAGACT
*
153005 CAAGTCACCCAGACC
1 CAAGTCACCCAGACT
153020 CAAGTCACCCAGACT
1 CAAGTCACCCAGACT
153035 CAAGTTCACCCA
1 CAAG-TCACCCA
153047 AACACTCCAA
Statistics
Matches: 64, Mismatches: 7, Indels: 4
0.85 0.09 0.05
Matches are distributed among these distances:
15 41 0.64
16 22 0.34
17 1 0.02
ACGTcount: A:0.34, C:0.39, G:0.11, T:0.16
Consensus pattern (15 bp):
CAAGTCACCCAGACT
Left flanking sequence: Indices 152458 -- 152957
CGTGTACGAGTTCTTGCGCTGGCTCGCTGCCCGCCACCACGAGGTGTCGATCGCTCCCGCGTCGT
TCAACGCCCGCCCGCTGACCGAACACCACGTGACGCTGGCCCAGCGGGAGATCAGCCAGGTGTAT
CTGATGGCGCTCATGCAGCTTGTTGAGCACCACGCACGCCAGCTCATGCCCAACTACTGCCACGA
GATCATCAACCAGTGGAGTTTGGGGTCGGGGATGAAGCGCAGGCTCATGAAGTGGTACAACGAGC
GCAAAAAGTCTCATTACAAGCGGGTGGAGCGTGAGCGGGCCCTGAGAATCGCCGAGTTGCGCACG
GAAACGGCCGAGGACGACGGGTTCCTTGACATCATGTAAATAGACCGCATGGATAGACGAGACAC
GACAATAGATTCAGAAGCAAGGAAGGGGTTTGGGAGAGTAGGGTGTAGATACACCAGCAGGGCAG
GGCCCCATGGGGTTTATTCGACAGGGTCATACCACACAAAGTACC
Right flanking sequence: Indices 153047 -- 153546
AACACTCCAAGATCAAACCTACGTGGCGACTCTCCGTCGAACAATCTATATCTATAATCTATAAT
GCCTTCTTGGCGGCCTTCTTCGCCTTCGCGGCCTCCACCGCCTGGAACTCCTGCTCAAAACTCTG
GTAGTTGTGGTAGTATCCGTCCTTCACGGAGAACCACCGGACAATAGGCCAGCGCAACACCCAGT
CCACCAACCCAAACTGGCGGGCAAAAGACGCCACGACAAAGTACACAAGCCCAAGAGCCACCCCA
AGCATCACCCCCACAGCCACCTGGGGCCAGGTGTGGTACATGAGGTAGACCCTCAGGAACGGGAC
AAGGAAGCCCACGGTGAGAAGACCAGCACTCACCACCACCTTGGAAAGTGTCGACACGGGCACCT
TGGTAAGCACCACACACAAGAAGTACGCGGCAAAGAAGCCCGCAAACTGCGAGTGGGCCAGGGGC
ATCCCGTAGGATGACCCGTACGAGCCCTTGCCAAAATCCTTGTGG
Found at i:178109 original size:15 final size:15
Alignment explanation
Indices: 178085--178118 Score: 59
Period size: 15 Copynumber: 2.3 Consensus size: 15
178075 CTTTACCTCA
178085 CTGGTCGTAAGCTCG
1 CTGGTCGTAAGCTCG
*
178100 CTGGTTGTAAGCTCG
1 CTGGTCGTAAGCTCG
178115 CTGG
1 CTGG
178119 AGCTGGAGCT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.12, C:0.24, G:0.35, T:0.29
Consensus pattern (15 bp):
CTGGTCGTAAGCTCG
Left flanking sequence: Indices 177585 -- 178084
TGATTTGACGTATTTTAGTAACCGCGCTTATGGAACCACGTAGTGTGCAGGAAACTCGGAGAAGA
CGGGTGTCATTCCGGCACATGGTTAGTCAGCGGTGACTATGGCTGCAAATAAAGATTGTGTTAAA
ACGTGGGTCGAGGCCAGTCTGGGCCCATTGACTCGGTTCGAAAGTGACAAACGTAAATTTTAGCA
ATTACTTGCGGGACAAGCGCGCACTCAACTGAGGTATTGGAATTCTATGGAACAATGGATCATAC
GGGTGACACAATCCGAGGAAGCGTACCCCTGATTCACATGTATTATCATATTCTGTACATCTAAG
AGTTCTGTAATCCGGGGCGGGGAATGATTTCGCCAGTCACAAAAGCAACATACCGGCGACGGCAC
CGAGGGCTCCCATAGCAAGACCACCGGCGCCTGTGGTGGCCAAACCGACGCCAGAGACGGTTGAC
GACACTATTCTGGAAGCCAGAGTAAAAGACGTAGTCTTTACCTCA
Right flanking sequence: Indices 178119 -- 178618
AGCTGGAGCTGGAGCTGGAGCTCTCCTCGTCGTGCTTGGGACGATGGCGTCTAGTTTTGTACTTG
CTTCCTTTAGCCTGAGTAGCCTCGACGGTTAAAGTGAAGAGGGTAAGATAAATGAGCTGGGTCCA
CATGATTGAGGGTTGTGTTAGTGGGTTTGAGGATGGCCAAAGGCTATTTATACAACGAGTGGTTT
CACAGGCTCTAATCATTTTCGGACATTGTTCGGAGGCTTTGTTGATACGAAGTTCTATTTACGAA
ACATAAACAAGTGGAGACCTGAGGCTGAGCGTTGAGCGGTCTGCGACGATGTGTGGGATGTGAGA
ATGTATACCATCCCACTAACTCCATCATTGAAACCAGTCATGGTGGTGACAGTCGTCAGTAACAT
TTTTGACAGTTGTCAGGAAATCTTTTCAAGCACGGCTGAGTCGTGTATCACTCGCGTGGGGTTAC
GGAATGTGAAACAAATACGAAACCTAGTAGGCTTGAGCACGTAGA
Found at i:178125 original size:6 final size:6
Alignment explanation
Indices: 178114--178140 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
178104 TTGTAAGCTC
178114 GCTGGA GCTGGA GCTGGA GCTGGA GCT
1 GCTGGA GCTGGA GCTGGA GCTGGA GCT
178141 CTCCTCGTCG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.15, C:0.19, G:0.48, T:0.19
Consensus pattern (6 bp):
GCTGGA
Left flanking sequence: Indices 177614 -- 178113
ATGGAACCACGTAGTGTGCAGGAAACTCGGAGAAGACGGGTGTCATTCCGGCACATGGTTAGTCA
GCGGTGACTATGGCTGCAAATAAAGATTGTGTTAAAACGTGGGTCGAGGCCAGTCTGGGCCCATT
GACTCGGTTCGAAAGTGACAAACGTAAATTTTAGCAATTACTTGCGGGACAAGCGCGCACTCAAC
TGAGGTATTGGAATTCTATGGAACAATGGATCATACGGGTGACACAATCCGAGGAAGCGTACCCC
TGATTCACATGTATTATCATATTCTGTACATCTAAGAGTTCTGTAATCCGGGGCGGGGAATGATT
TCGCCAGTCACAAAAGCAACATACCGGCGACGGCACCGAGGGCTCCCATAGCAAGACCACCGGCG
CCTGTGGTGGCCAAACCGACGCCAGAGACGGTTGACGACACTATTCTGGAAGCCAGAGTAAAAGA
CGTAGTCTTTACCTCACTGGTCGTAAGCTCGCTGGTTGTAAGCTC
Right flanking sequence: Indices 178141 -- 178640
CTCCTCGTCGTGCTTGGGACGATGGCGTCTAGTTTTGTACTTGCTTCCTTTAGCCTGAGTAGCCT
CGACGGTTAAAGTGAAGAGGGTAAGATAAATGAGCTGGGTCCACATGATTGAGGGTTGTGTTAGT
GGGTTTGAGGATGGCCAAAGGCTATTTATACAACGAGTGGTTTCACAGGCTCTAATCATTTTCGG
ACATTGTTCGGAGGCTTTGTTGATACGAAGTTCTATTTACGAAACATAAACAAGTGGAGACCTGA
GGCTGAGCGTTGAGCGGTCTGCGACGATGTGTGGGATGTGAGAATGTATACCATCCCACTAACTC
CATCATTGAAACCAGTCATGGTGGTGACAGTCGTCAGTAACATTTTTGACAGTTGTCAGGAAATC
TTTTCAAGCACGGCTGAGTCGTGTATCACTCGCGTGGGGTTACGGAATGTGAAACAAATACGAAA
CCTAGTAGGCTTGAGCACGTAGATCCTAGCGTAGATCTTAGTAGA
Found at i:180735 original size:9 final size:9
Alignment explanation
Indices: 180721--180758 Score: 62
Period size: 9 Copynumber: 4.4 Consensus size: 9
180711 CAAAAGCCTT
180721 TCTCGTCTC
1 TCTCGTCTC
180730 TCTCGTCTC
1 TCTCGTCTC
180739 TCTCGTCTC
1 TCTCGTCTC
180748 T-T-GTCTC
1 TCTCGTCTC
180755 TCTC
1 TCTC
180759 CTTCCACCCG
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
7 6 0.22
8 2 0.07
9 19 0.70
ACGTcount: A:0.00, C:0.42, G:0.11, T:0.47
Consensus pattern (9 bp):
TCTCGTCTC
Left flanking sequence: Indices 180221 -- 180720
GGTCCTCCATGGTGAGGACGAGTGGAGGTGCGCGCGGTTTTGGTGGCGAGGTGCAGCACGAGTGT
GCAGGTGGGTGGTGGGAGAGAGGAGAGGTGGGAGGAGGAAAGCGCGGCCAGAGGAGGAGAGTGAG
GAGGGTGGCAGAGCAAGAGGAGGAGATTGGTTACAGAGGAGAAGTTGTGAGTCCAGGCAGTGTCA
GTGGTGGTGGGTGATATCGCAACAGTGTGGTGAAATTTTAAGTATTTCGTGTGGATGCGTTGTTA
CATAGTGAATTGTTAACGGGCGTGGCACTATGTTGGCTGGCATGGCACATTGTTAGCTGGTCAAG
GCACCGGTGGACGAACTGGGTGTGATCCGGCTTGCTTCTTGGCAAATTGGCGGTGGCTACGTGCG
TCAATTGATCCGTTTTTGTCTGCAACAACCAGGTGGCCTGAACGGTGGCCAAAAAGGTGCCTTAC
GGGTGGCTCCATTTGACTGGATTTCGTCACACCGCCAAAAGCCTT
Right flanking sequence: Indices 180759 -- 181258
CTTCCACCCGTAACTCTACATCACCTCGTTCTTCAGCACAGCTATGTACACAACTCACTTGCTAT
CTCGCCAGCTATCTTTAGCCGTTCATTATCTCCACTCCGTTGCTAGCGCCCACCCCGATGCAGCG
ACCACCCCGTTACATTGCTCGCCGATCTATCTCGTAACCATCCCTACCGTCACCTCGTCTCTCGT
CTCCACCGTCTCTCTAGCCACCTCGCTTATCGTCTCCACCATCACCATCTGATCGTCTCACCCCA
TTTCCATCGTCTCTATCATCTCACCCCATCCCCATCATCTCATTCCCACCTCTTCCCCACCACCT
CTCCCTTCTCCATCCCCCCACTACCACGTTACATTTCGCCACTGTTGCTCTAGTAGGCGCAGTGG
TTACCCCATTCAGACGCGGGCCTAACCGCGTCTAGACGATCCACCAACAAAAAACCACCTCTCCA
CTAAACTCTCTCTTCCCTCCACCTCTCTCTCACCTCTCTCCACCA
Found at i:180747 original size:16 final size:16
Alignment explanation
Indices: 180728--180758 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
180718 CTTTCTCGTC
180728 TCTCTCGTCTCTCTCG
1 TCTCTCGTCTCTCTCG
*
180744 TCTCTTGTCTCTCTC
1 TCTCTCGTCTCTCTC
180759 CTTCCACCCG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.00, C:0.42, G:0.10, T:0.48
Consensus pattern (16 bp):
TCTCTCGTCTCTCTCG
Left flanking sequence: Indices 180228 -- 180727
CATGGTGAGGACGAGTGGAGGTGCGCGCGGTTTTGGTGGCGAGGTGCAGCACGAGTGTGCAGGTG
GGTGGTGGGAGAGAGGAGAGGTGGGAGGAGGAAAGCGCGGCCAGAGGAGGAGAGTGAGGAGGGTG
GCAGAGCAAGAGGAGGAGATTGGTTACAGAGGAGAAGTTGTGAGTCCAGGCAGTGTCAGTGGTGG
TGGGTGATATCGCAACAGTGTGGTGAAATTTTAAGTATTTCGTGTGGATGCGTTGTTACATAGTG
AATTGTTAACGGGCGTGGCACTATGTTGGCTGGCATGGCACATTGTTAGCTGGTCAAGGCACCGG
TGGACGAACTGGGTGTGATCCGGCTTGCTTCTTGGCAAATTGGCGGTGGCTACGTGCGTCAATTG
ATCCGTTTTTGTCTGCAACAACCAGGTGGCCTGAACGGTGGCCAAAAAGGTGCCTTACGGGTGGC
TCCATTTGACTGGATTTCGTCACACCGCCAAAAGCCTTTCTCGTC
Right flanking sequence: Indices 180759 -- 181258
CTTCCACCCGTAACTCTACATCACCTCGTTCTTCAGCACAGCTATGTACACAACTCACTTGCTAT
CTCGCCAGCTATCTTTAGCCGTTCATTATCTCCACTCCGTTGCTAGCGCCCACCCCGATGCAGCG
ACCACCCCGTTACATTGCTCGCCGATCTATCTCGTAACCATCCCTACCGTCACCTCGTCTCTCGT
CTCCACCGTCTCTCTAGCCACCTCGCTTATCGTCTCCACCATCACCATCTGATCGTCTCACCCCA
TTTCCATCGTCTCTATCATCTCACCCCATCCCCATCATCTCATTCCCACCTCTTCCCCACCACCT
CTCCCTTCTCCATCCCCCCACTACCACGTTACATTTCGCCACTGTTGCTCTAGTAGGCGCAGTGG
TTACCCCATTCAGACGCGGGCCTAACCGCGTCTAGACGATCCACCAACAAAAAACCACCTCTCCA
CTAAACTCTCTCTTCCCTCCACCTCTCTCTCACCTCTCTCCACCA
Found at i:180876 original size:18 final size:17
Alignment explanation
Indices: 180855--180899 Score: 54
Period size: 17 Copynumber: 2.6 Consensus size: 17
180845 TTCATTATCT
* *
180855 CCACTCCGTTGCTAGCGC
1 CCACCCCGTTGC-AGCGA
*
180873 CCACCCCGATGCAGCGA
1 CCACCCCGTTGCAGCGA
180890 CCACCCCGTT
1 CCACCCCGTT
180900 ACATTGCTCG
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
17 13 0.57
18 10 0.43
ACGTcount: A:0.16, C:0.49, G:0.20, T:0.16
Consensus pattern (17 bp):
CCACCCCGTTGCAGCGA
Left flanking sequence: Indices 180355 -- 180854
GTGGCAGAGCAAGAGGAGGAGATTGGTTACAGAGGAGAAGTTGTGAGTCCAGGCAGTGTCAGTGG
TGGTGGGTGATATCGCAACAGTGTGGTGAAATTTTAAGTATTTCGTGTGGATGCGTTGTTACATA
GTGAATTGTTAACGGGCGTGGCACTATGTTGGCTGGCATGGCACATTGTTAGCTGGTCAAGGCAC
CGGTGGACGAACTGGGTGTGATCCGGCTTGCTTCTTGGCAAATTGGCGGTGGCTACGTGCGTCAA
TTGATCCGTTTTTGTCTGCAACAACCAGGTGGCCTGAACGGTGGCCAAAAAGGTGCCTTACGGGT
GGCTCCATTTGACTGGATTTCGTCACACCGCCAAAAGCCTTTCTCGTCTCTCTCGTCTCTCTCGT
CTCTTGTCTCTCTCCTTCCACCCGTAACTCTACATCACCTCGTTCTTCAGCACAGCTATGTACAC
AACTCACTTGCTATCTCGCCAGCTATCTTTAGCCGTTCATTATCT
Right flanking sequence: Indices 180900 -- 181399
ACATTGCTCGCCGATCTATCTCGTAACCATCCCTACCGTCACCTCGTCTCTCGTCTCCACCGTCT
CTCTAGCCACCTCGCTTATCGTCTCCACCATCACCATCTGATCGTCTCACCCCATTTCCATCGTC
TCTATCATCTCACCCCATCCCCATCATCTCATTCCCACCTCTTCCCCACCACCTCTCCCTTCTCC
ATCCCCCCACTACCACGTTACATTTCGCCACTGTTGCTCTAGTAGGCGCAGTGGTTACCCCATTC
AGACGCGGGCCTAACCGCGTCTAGACGATCCACCAACAAAAAACCACCTCTCCACTAAACTCTCT
CTTCCCTCCACCTCTCTCTCACCTCTCTCCACCATCACTACGACCATCCCTACCACACCCCTACC
ACCCTCCTACCTCTCTCCCCTATCCCCACCCCCCACCATCCCTACCCTCCTTCTCCCACCTACTA
CCCACCTTTCCCACTTCACCCTTCACCACCTCAGCCGTGGGTTAG
Found at i:184343 original size:15 final size:15
Alignment explanation
Indices: 184323--184364 Score: 84
Period size: 15 Copynumber: 2.8 Consensus size: 15
184313 GGTAGAAAAC
184323 ATGAAGAGTGGGAAT
1 ATGAAGAGTGGGAAT
184338 ATGAAGAGTGGGAAT
1 ATGAAGAGTGGGAAT
184353 ATGAAGAGTGGG
1 ATGAAGAGTGGG
184365 GAGGGAGAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 27 1.00
ACGTcount: A:0.38, C:0.00, G:0.43, T:0.19
Consensus pattern (15 bp):
ATGAAGAGTGGGAAT
Left flanking sequence: Indices 183823 -- 184322
GGCCGGGGTCGAGGACGACGGGCTGATCGACCTGTTTGAGTACGTGGCGCTGGTGCGCGAGGCGG
TGCTCGACTGCTACGCCGGGGTGGTGGCGGCGTTTGCCAGCGAGCCCGACGTGATCTACCCCTAC
GTGGCGCCGATTTTTGCCGCCGTCCAGCAGGTGGCGCAGGACCCGGCGCTCGCGCTGGCCGAGCT
CACCGTGCGCACGCTGGTGGGCCTCTTGGGCGACCTTGCCGCGATGTTCCCCGGGCGCCAGTTCA
AGCAGGCGTACACCCAGCCGTGGGTGACCGACTTTATCCGGCGGGCGCGGGCCTACCCCTACTTT
GACGAAAAGACCAAGGACGCGGCGCGGTGGGCCCGTGACCAGCAAAAGCGCCAGATCCAGTAGGC
GCGCTTCTCTCGTTTCTGCATAACCCCATTCATTTCCCTCATCTCTAATCGCGTTTTCTCTCACC
GTTAAATAGATCAATCCACATTGAGAAAAGTGTCGGGTAGAAAAC
Right flanking sequence: Indices 184365 -- 184864
GAGGGAGAACTATCCTGTTGGGTGGGTATGAAATAAAGGCACGCCAAACCAGCTATTGATGATAG
GTGTATCGTATGAGTGGAAAAATAGGTATGAAAGTGATGCTTTGTGGGCTTGGGAGTGAAGGTAA
AATAGTGTATAGGGATTTAATAAAAGTGTTGAAAAATCGGTGGATTGGATTCCTCGGCAGGTTAG
CCTTGTTGAGGGTCAGTCATGGCAGGAATCCTTATCTGTTTACTTCAATGGATAGCCATATAGGC
ATTTCGCTTGATTAATAACTCACGCTCGCAGATGCTGCCTTGATCTTTGTGCTAATACGACGGGT
AGTAGTATGAATGTCCGAACTATGGGTTTAGCCAGTAGCTGAAGCGGTTCGTCGATTATTATGAT
AATAAGGCGTTCTTGCTATCGGTTTAGGTTATGTAGTCCAATACCCTTAGGACGATTCTTTCAGT
GAATATGGTATTCGAGTACCACACACTGATGTCGCTAACAGTGAT
Found at i:185535 original size:13 final size:13
Alignment explanation
Indices: 185499--185564 Score: 80
Period size: 13 Copynumber: 5.1 Consensus size: 13
185489 GTTCTCTATT
185499 CCTGCTACCATTC
1 CCTGCTACCATTC
185512 TCCTGCTACCATTC
1 -CCTGCTACCATTC
* *
185526 CCTGCAACCAATC
1 CCTGCTACCATTC
*
185539 CCTGCT-CCATCC
1 CCTGCTACCATTC
*
185551 CCTGCTTCCATTC
1 CCTGCTACCATTC
185564 C
1 C
185565 TACCACTCCC
Statistics
Matches: 45, Mismatches: 6, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
12 10 0.22
13 22 0.49
14 13 0.29
ACGTcount: A:0.15, C:0.48, G:0.08, T:0.29
Consensus pattern (13 bp):
CCTGCTACCATTC
Left flanking sequence: Indices 184999 -- 185498
CATTGTGGGTGTTAAGATACAAATGCTAGCAGTTGTGGTGTGTGAGGGGTATTCCTGGCTTTCTC
TCGACTACGCTGGCCAGTCCGAGCTGCTTTGGAATGTCTTCATAAAAAATGAAACTCTTAGGACA
CAATCCATTGATATACTCCAATAACACTCTACAAATCAACCATCCCTCTCGCGATCCACATGATT
GAAACAAACGATTACATGCTAAAAAATCCTAACCTTACATTTCTAGCTGATGATCTGGAAGATCG
CAAAACTTATACATCTATCCAAAGTAGTGAGTAAATGCCTCAGCTGAGACCGCAGCTGGCTTTCT
GAACCGTTCAAATAAAACTGAAACTAAACTAGCAACACACGCCACTTCCAATCTGACCCAGGGTC
AACCTTCAGAAAGCTACTTACTCGAATGATACACCTACCTCCACAATCACACCATCTGACCACTA
CGACTCCACTACTACCCCACAATCCACTAACCCATGTTCTCTATT
Right flanking sequence: Indices 185565 -- 186064
TACCACTCCCCTACCTTCCATCACCACCCTCCAAACTACTCATACATTATCCTACTACTCTATCA
GTAATCGTCCCACTCGTCGTCCTTCTTCAGCCCCATCCCCTGCATCAGCGACTTCTGCTGCGGCT
TGTCCAAGCCAAACGCCGTGGGCACCGCCTCGTACCCGGCCTTCTGCTCGTCGCCAAGCCACAAC
TTGCCGAACCGCTCGTCAAACGTCTTACCCACCCCTTTCTCTTGCACCTCGTGGGTGAACAGCTG
GAACGTTTCCTGCCCGTACTTGCCCGTCTCCAGCATCTTCTGCCCAAACTGCGCCATCGCCTTCT
TGGCCTCCAGCCCCAACTCCAGCTCCTGGAGCTGCGAGAACCCGGGCTTGATCACCAGCTCGTTC
ACCTCCGACACCAGCTTCGCCACCACGCTGGAAAACAACCCCCACCCGCGCAGCAACGTGCCCAC
GGGGTCCAGCTGGAAGTTGTCCACGGTGAAGCCGGCCAACGACCC
Found at i:185554 original size:25 final size:27
Alignment explanation
Indices: 185499--185555 Score: 73
Period size: 27 Copynumber: 2.2 Consensus size: 27
185489 GTTCTCTATT
* * *
185499 CCTGCTACCATTCTCCTGCTACCATTC
1 CCTGCAACCAATCTCCTGCTACCATCC
185526 CCTGCAACCAATC-CCTGCT-CCATCC
1 CCTGCAACCAATCTCCTGCTACCATCC
185551 CCTGC
1 CCTGC
185556 TTCCATTCCT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
25 10 0.37
26 6 0.22
27 11 0.41
ACGTcount: A:0.16, C:0.49, G:0.09, T:0.26
Consensus pattern (27 bp):
CCTGCAACCAATCTCCTGCTACCATCC
Left flanking sequence: Indices 184999 -- 185498
CATTGTGGGTGTTAAGATACAAATGCTAGCAGTTGTGGTGTGTGAGGGGTATTCCTGGCTTTCTC
TCGACTACGCTGGCCAGTCCGAGCTGCTTTGGAATGTCTTCATAAAAAATGAAACTCTTAGGACA
CAATCCATTGATATACTCCAATAACACTCTACAAATCAACCATCCCTCTCGCGATCCACATGATT
GAAACAAACGATTACATGCTAAAAAATCCTAACCTTACATTTCTAGCTGATGATCTGGAAGATCG
CAAAACTTATACATCTATCCAAAGTAGTGAGTAAATGCCTCAGCTGAGACCGCAGCTGGCTTTCT
GAACCGTTCAAATAAAACTGAAACTAAACTAGCAACACACGCCACTTCCAATCTGACCCAGGGTC
AACCTTCAGAAAGCTACTTACTCGAATGATACACCTACCTCCACAATCACACCATCTGACCACTA
CGACTCCACTACTACCCCACAATCCACTAACCCATGTTCTCTATT
Right flanking sequence: Indices 185556 -- 186055
TTCCATTCCTACCACTCCCCTACCTTCCATCACCACCCTCCAAACTACTCATACATTATCCTACT
ACTCTATCAGTAATCGTCCCACTCGTCGTCCTTCTTCAGCCCCATCCCCTGCATCAGCGACTTCT
GCTGCGGCTTGTCCAAGCCAAACGCCGTGGGCACCGCCTCGTACCCGGCCTTCTGCTCGTCGCCA
AGCCACAACTTGCCGAACCGCTCGTCAAACGTCTTACCCACCCCTTTCTCTTGCACCTCGTGGGT
GAACAGCTGGAACGTTTCCTGCCCGTACTTGCCCGTCTCCAGCATCTTCTGCCCAAACTGCGCCA
TCGCCTTCTTGGCCTCCAGCCCCAACTCCAGCTCCTGGAGCTGCGAGAACCCGGGCTTGATCACC
AGCTCGTTCACCTCCGACACCAGCTTCGCCACCACGCTGGAAAACAACCCCCACCCGCGCAGCAA
CGTGCCCACGGGGTCCAGCTGGAAGTTGTCCACGGTGAAGCCGGC
Found at i:187545 original size:13 final size:13
Alignment explanation
Indices: 187527--187580 Score: 85
Period size: 13 Copynumber: 4.3 Consensus size: 13
187517 CTCAATTACT
187527 TGTGCTATCCACC
1 TGTGCTATCCACC
187540 TGTGCTATCCACC
1 TGTGCTATCCACC
187553 --TGCTATCCACC
1 TGTGCTATCCACC
*
187564 TGTGCTATTCACC
1 TGTGCTATCCACC
187577 TGTG
1 TGTG
187581 ACCATTGCTA
Statistics
Matches: 38, Mismatches: 1, Indels: 4
0.88 0.02 0.09
Matches are distributed among these distances:
11 11 0.29
13 27 0.71
ACGTcount: A:0.15, C:0.35, G:0.17, T:0.33
Consensus pattern (13 bp):
TGTGCTATCCACC
Left flanking sequence: Indices 187027 -- 187526
GGTCATTGTAGGAAGGTGCTACTGTAGGTTGGAATTAACCGTTTCACTGAGTGGTGGACTCGTGA
CTACTGCCTTTGTGACGTTCGAGGTACGAGATACGCGTAAATGGAACACGCAAGCGATTGCATCG
TCAATGGTTTTAGAGGACGCGGGGCTGTGACTCGGGGTTGTCAGGACTCGGGCTGTCGGGACTCG
CTGTCTTGGTGGAGTGCATAATGCCTTACAGGTTACATCAAGAGACGGTAAACAGAGATACAATA
TAGCACAATCTTGTAGAACTAGTAAAGACAAGTTTGTAGAACTAAGATGGCAGAATCTTAAGCAC
AACCTCGTAGAACTATGAAAGCACAATCCTCAGCGTAACTCGTCCCATGGTGAAGCAAATCCACA
AGCACGACGGACTACACCTTTGCTAAAAGCACGGATCTACCCAACTACCTTTTTAGTACCATGAT
ACTACAATTGGTATCACTAACACCTCCACTAAACCCTCAATTACT
Right flanking sequence: Indices 187581 -- 188080
ACCATTGCTATCTCTTATCGTATTCATATATAGTCATTACAACTTGGTGCCCCGCTCGGAGTTTC
TGTCGATGATCTGCACGGGGTACACGTCGCCCATCGAGGTGCCCATGTGCCACGAGCCACCGTCC
ACCACCTGGATGGTCCCGGTCACGTACGACGCAGCCTCCGAGAACAAGTACACCGTCAGCTCGGC
AATGTCCTGGGTCTTGCCGAGTCTCTGCACGGGGATCCGCCCAATGAACGCATCGAGGTCGGGCA
CCAACCGCGCCAACCCCTCGGTCTCCGCAATGGGACCAGGGGCAATACAGTTGGACCGGATGCCA
AGGGGCCCGAGCTCCACGGCAAGCGCGTTGGAAAGCGCATCCACACCGGCCTTGGCCGCACCAAC
GTGGCACTGGAAGGGCACCCCGTAGTAGTGGAGCGTCGCCAGCACAAAAATGATCGCGCCCTTGT
TCTTACGGAGCTCGTCAAAGCACGCCTTGACGGTGTTGTACGACC
Found at i:187558 original size:11 final size:11
Alignment explanation
Indices: 187529--187565 Score: 56
Period size: 11 Copynumber: 3.2 Consensus size: 11
187519 CAATTACTTG
187529 TGCTATCCACC
1 TGCTATCCACC
187540 TGTGCTATCCACC
1 --TGCTATCCACC
187553 TGCTATCCACC
1 TGCTATCCACC
187564 TG
1 TG
187566 TGCTATTCAC
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
11 13 0.54
13 11 0.46
ACGTcount: A:0.16, C:0.41, G:0.14, T:0.30
Consensus pattern (11 bp):
TGCTATCCACC
Left flanking sequence: Indices 187029 -- 187528
TCATTGTAGGAAGGTGCTACTGTAGGTTGGAATTAACCGTTTCACTGAGTGGTGGACTCGTGACT
ACTGCCTTTGTGACGTTCGAGGTACGAGATACGCGTAAATGGAACACGCAAGCGATTGCATCGTC
AATGGTTTTAGAGGACGCGGGGCTGTGACTCGGGGTTGTCAGGACTCGGGCTGTCGGGACTCGCT
GTCTTGGTGGAGTGCATAATGCCTTACAGGTTACATCAAGAGACGGTAAACAGAGATACAATATA
GCACAATCTTGTAGAACTAGTAAAGACAAGTTTGTAGAACTAAGATGGCAGAATCTTAAGCACAA
CCTCGTAGAACTATGAAAGCACAATCCTCAGCGTAACTCGTCCCATGGTGAAGCAAATCCACAAG
CACGACGGACTACACCTTTGCTAAAAGCACGGATCTACCCAACTACCTTTTTAGTACCATGATAC
TACAATTGGTATCACTAACACCTCCACTAAACCCTCAATTACTTG
Right flanking sequence: Indices 187566 -- 188065
TGCTATTCACCTGTGACCATTGCTATCTCTTATCGTATTCATATATAGTCATTACAACTTGGTGC
CCCGCTCGGAGTTTCTGTCGATGATCTGCACGGGGTACACGTCGCCCATCGAGGTGCCCATGTGC
CACGAGCCACCGTCCACCACCTGGATGGTCCCGGTCACGTACGACGCAGCCTCCGAGAACAAGTA
CACCGTCAGCTCGGCAATGTCCTGGGTCTTGCCGAGTCTCTGCACGGGGATCCGCCCAATGAACG
CATCGAGGTCGGGCACCAACCGCGCCAACCCCTCGGTCTCCGCAATGGGACCAGGGGCAATACAG
TTGGACCGGATGCCAAGGGGCCCGAGCTCCACGGCAAGCGCGTTGGAAAGCGCATCCACACCGGC
CTTGGCCGCACCAACGTGGCACTGGAAGGGCACCCCGTAGTAGTGGAGCGTCGCCAGCACAAAAA
TGATCGCGCCCTTGTTCTTACGGAGCTCGTCAAAGCACGCCTTGA
Found at i:187561 original size:24 final size:24
Alignment explanation
Indices: 187529--187578 Score: 91
Period size: 24 Copynumber: 2.1 Consensus size: 24
187519 CAATTACTTG
187529 TGCTATCCACCTGTGCTATCCACC
1 TGCTATCCACCTGTGCTATCCACC
*
187553 TGCTATCCACCTGTGCTATTCACC
1 TGCTATCCACCTGTGCTATCCACC
187577 TG
1 TG
187579 TGACCATTGC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.16, C:0.38, G:0.14, T:0.32
Consensus pattern (24 bp):
TGCTATCCACCTGTGCTATCCACC
Left flanking sequence: Indices 187029 -- 187528
TCATTGTAGGAAGGTGCTACTGTAGGTTGGAATTAACCGTTTCACTGAGTGGTGGACTCGTGACT
ACTGCCTTTGTGACGTTCGAGGTACGAGATACGCGTAAATGGAACACGCAAGCGATTGCATCGTC
AATGGTTTTAGAGGACGCGGGGCTGTGACTCGGGGTTGTCAGGACTCGGGCTGTCGGGACTCGCT
GTCTTGGTGGAGTGCATAATGCCTTACAGGTTACATCAAGAGACGGTAAACAGAGATACAATATA
GCACAATCTTGTAGAACTAGTAAAGACAAGTTTGTAGAACTAAGATGGCAGAATCTTAAGCACAA
CCTCGTAGAACTATGAAAGCACAATCCTCAGCGTAACTCGTCCCATGGTGAAGCAAATCCACAAG
CACGACGGACTACACCTTTGCTAAAAGCACGGATCTACCCAACTACCTTTTTAGTACCATGATAC
TACAATTGGTATCACTAACACCTCCACTAAACCCTCAATTACTTG
Right flanking sequence: Indices 187579 -- 188078
TGACCATTGCTATCTCTTATCGTATTCATATATAGTCATTACAACTTGGTGCCCCGCTCGGAGTT
TCTGTCGATGATCTGCACGGGGTACACGTCGCCCATCGAGGTGCCCATGTGCCACGAGCCACCGT
CCACCACCTGGATGGTCCCGGTCACGTACGACGCAGCCTCCGAGAACAAGTACACCGTCAGCTCG
GCAATGTCCTGGGTCTTGCCGAGTCTCTGCACGGGGATCCGCCCAATGAACGCATCGAGGTCGGG
CACCAACCGCGCCAACCCCTCGGTCTCCGCAATGGGACCAGGGGCAATACAGTTGGACCGGATGC
CAAGGGGCCCGAGCTCCACGGCAAGCGCGTTGGAAAGCGCATCCACACCGGCCTTGGCCGCACCA
ACGTGGCACTGGAAGGGCACCCCGTAGTAGTGGAGCGTCGCCAGCACAAAAATGATCGCGCCCTT
GTTCTTACGGAGCTCGTCAAAGCACGCCTTGACGGTGTTGTACGA
Found at i:189105 original size:16 final size:16
Alignment explanation
Indices: 189069--189123 Score: 65
Period size: 16 Copynumber: 3.4 Consensus size: 16
189059 ACGGGCCTCG
*
189069 GATGAGTAGACCATCA
1 GATGAGTAGACCACCA
* * *
189085 AATGAGTAGAACACCG
1 GATGAGTAGACCACCA
*
189101 GATGAGTAGGCCACCA
1 GATGAGTAGACCACCA
189117 GATGAGT
1 GATGAGT
189124 GTGGAGAATC
Statistics
Matches: 31, Mismatches: 8, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
16 31 1.00
ACGTcount: A:0.36, C:0.18, G:0.29, T:0.16
Consensus pattern (16 bp):
GATGAGTAGACCACCA
Left flanking sequence: Indices 188569 -- 189068
AGGTGTTATGTAAGCAGCCGTTGGGGGGAAAAGGGGGAATGGGGGGAAATGGAGAGGATTGGGTG
CGGTGGGATCGGTAATGGGCGGCGCGCGTAGAGGCAATGGAGAGGAAGGAGGCGGGTGTGCGCTT
TGGATTGTTGTTTAGCGTGGAGGCGTGTTACTGTGCCCTTGCCCCTCGTTCTGGACCATGCGTGG
AACAGCATAACGCATGCAAGTTGGCGGCTCCGGAGCGAAGGGGTATCCGAGACGCCTGAAATCGA
CGGCTGTGGGGGGTAGTTTACGAGAGGGTGGTGTAGTTTTGGGGTAAACTGGGGCAATTGCACAT
TTGGTTATGGATTTGTGTCTAAAGTGACTCAATCGTGGATCTTGTTCTTCGTGACAGCTCCCACT
ACTTTCGAGTCCTCACAAATCTGATCTTATCGTAACAATACCATTGTGCCAAATCTTGGCGCAAA
GGACCTAGATGACACATCCCATTGTTCGCTGTACGACGGGCCTCG
Right flanking sequence: Indices 189124 -- 189623
GTGGAGAATCCAGTTGGCAGTAACGGGCTAAACACCCAAATGATAATACCACTCTAATCCACCTA
ATCACTCAGCTCTGTGTACAAACCCCTGGACGACGTTCAATTGAAGCCTCCATCGTCCCCTCATC
GTACCCCACCACTTACTATACACACCAATCCATCAATCCACCAATCCACTACCACCACACAATAA
GCGTTGGGGGTCTGGGGGCGCCGCCTGCGGCCCCCAGCTGCAACCGTGCCTTCCCCACCCTGTCT
TCCGCCCTGTCTTCCACCCTTCCTTCTCGCCCTACCTTATCACCCTGCTTCTCACCTACACTCTA
CACTTCTTCTCTGCCTGCCCAAACGGGCTATATATTATCACAATAATACAGTTACAATGCAATTT
TCTTCCCCACCGGCGCCGGCACGCCCGCGTGGTCGGCTTTCTCGTCGTCGCTGGCCACCAGGGCC
GGCGCGATCACCTCGGTGGCCTCGAGCGGCGTCAGCGCGGCCTCG
Found at i:190609 original size:15 final size:15
Alignment explanation
Indices: 190591--190621 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
190581 GTGGGCGGCG
190591 GGGTGAGCTCGGCCA
1 GGGTGAGCTCGGCCA
190606 GGGTGAGCTCGGCCA
1 GGGTGAGCTCGGCCA
190621 G
1 G
190622 CGCGAGCACG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.13, C:0.26, G:0.48, T:0.13
Consensus pattern (15 bp):
GGGTGAGCTCGGCCA
Left flanking sequence: Indices 190091 -- 190590
GAGGTGGCCAAAGAGCGCCGGGGCGATGTGGCGGTAGAACCCGCGGAGATACGCCAGCCACGCGT
CGTCCACCCCCAGCCCAAACTCGGCGTCGGACGCGTTGGGGTCCAAGAGGATCTTGATCGCCTCG
AACGCCTGGAGCTTGAGCCCGGGCGCCAGCTGCTCGCCCAAGAGCTGGAGCAAGAGCTGGTACAA
CGGGGTGACGGCGCCGTGGTCGCGCACCGCCAGCGCCATCGCGTGCACCATCAGCACGTCCTGCT
CGATCATCACCGTGGTGAGCTCGATGCCGAGCACCCGGATGGCGTTGTCGGAGTCCGAGAGCGCA
AAGTACACCATGTCGAAGAGGCCGCGGGCGATGATCGAGGTGTAGAACTCCTGTTTCTGGAACAG
CGGGAGCAGCTTCGTCATGAGAATGTACTGGTGGAGCATGCGGACGCCGTGGCGGCGGCGGGTGG
TGAGCGACGGGTCCAGCGGTATTATGGACGGGATGGTGGGCGGCG
Right flanking sequence: Indices 190622 -- 191121
CGCGAGCACGGGGGTGTCTGCGTTGAGCGGCAGGGTGAGCGAGGTGTCGCCGAGGTCGTCTGCCA
TGATGGTGTCGCCCAGAGCGTCGGTGGGGGGGTGGGATGGGAGTTTTTGGGAGGTCTGGTCAGAA
AGGGTGTGTGTAGATGGCTGGTCTGGTTGGATGGTTGTTTCGTCTGTAGTTGCCTCATCTGGTTG
GATGGTTGTTTCGTCTGTGGGTGACTGGTCTGGTAGAATGGTTGCCTGGTCTGGGGATATTTGGC
CTGGTTGAATGGTTTCGTGTGTGTGGGTGGCTTTTTTGGCTGCCTTTTCTGAACAGTCTGTGCTC
TCAGTCTTCACCTCTATCCCATCCTTTCCACCGTGGCCCTGAGCCTCAATATGGGCTCCACCATG
GTCCCGGCCTCCATCCTCGCCTCCTTCTCCACCACCAACCCCATTCGCTCCCCCTATTAGCTCGC
CACACCCCTTGTACAATGCAAACAACTCCGCCAACACCTCCAGCG
Found at i:190628 original size:15 final size:15
Alignment explanation
Indices: 190595--190628 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
190585 GCGGCGGGGT
* *
190595 GAGCTCGGCCAGGGT
1 GAGCTCGGCCAGCGC
190610 GAGCTCGGCCAGCGC
1 GAGCTCGGCCAGCGC
190625 GAGC
1 GAGC
190629 ACGGGGGTGT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.15, C:0.32, G:0.44, T:0.09
Consensus pattern (15 bp):
GAGCTCGGCCAGCGC
Left flanking sequence: Indices 190095 -- 190594
TGGCCAAAGAGCGCCGGGGCGATGTGGCGGTAGAACCCGCGGAGATACGCCAGCCACGCGTCGTC
CACCCCCAGCCCAAACTCGGCGTCGGACGCGTTGGGGTCCAAGAGGATCTTGATCGCCTCGAACG
CCTGGAGCTTGAGCCCGGGCGCCAGCTGCTCGCCCAAGAGCTGGAGCAAGAGCTGGTACAACGGG
GTGACGGCGCCGTGGTCGCGCACCGCCAGCGCCATCGCGTGCACCATCAGCACGTCCTGCTCGAT
CATCACCGTGGTGAGCTCGATGCCGAGCACCCGGATGGCGTTGTCGGAGTCCGAGAGCGCAAAGT
ACACCATGTCGAAGAGGCCGCGGGCGATGATCGAGGTGTAGAACTCCTGTTTCTGGAACAGCGGG
AGCAGCTTCGTCATGAGAATGTACTGGTGGAGCATGCGGACGCCGTGGCGGCGGCGGGTGGTGAG
CGACGGGTCCAGCGGTATTATGGACGGGATGGTGGGCGGCGGGGT
Right flanking sequence: Indices 190629 -- 191128
ACGGGGGTGTCTGCGTTGAGCGGCAGGGTGAGCGAGGTGTCGCCGAGGTCGTCTGCCATGATGGT
GTCGCCCAGAGCGTCGGTGGGGGGGTGGGATGGGAGTTTTTGGGAGGTCTGGTCAGAAAGGGTGT
GTGTAGATGGCTGGTCTGGTTGGATGGTTGTTTCGTCTGTAGTTGCCTCATCTGGTTGGATGGTT
GTTTCGTCTGTGGGTGACTGGTCTGGTAGAATGGTTGCCTGGTCTGGGGATATTTGGCCTGGTTG
AATGGTTTCGTGTGTGTGGGTGGCTTTTTTGGCTGCCTTTTCTGAACAGTCTGTGCTCTCAGTCT
TCACCTCTATCCCATCCTTTCCACCGTGGCCCTGAGCCTCAATATGGGCTCCACCATGGTCCCGG
CCTCCATCCTCGCCTCCTTCTCCACCACCAACCCCATTCGCTCCCCCTATTAGCTCGCCACACCC
CTTGTACAATGCAAACAACTCCGCCAACACCTCCAGCGAAATCAA
Found at i:190849 original size:36 final size:36
Alignment explanation
Indices: 190760--190860 Score: 121
Period size: 36 Copynumber: 2.8 Consensus size: 36
190750 AAAGGGTGTG
* *
190760 TGTAGATGGCTGGTCTGGTTGGATGGTTGTTTCGTC
1 TGTAGGTGACTGGTCTGGTTGGATGGTTGTTTCGTC
* * **
190796 TGTAGTTGCCTCATCTGGTTGGATGGTTGTTTCGTC
1 TGTAGGTGACTGGTCTGGTTGGATGGTTGTTTCGTC
* * *
190832 TGTGGGTGACTGGTCTGGTAGAATGGTTG
1 TGTAGGTGACTGGTCTGGTTGGATGGTTG
190861 CCTGGTCTGG
Statistics
Matches: 54, Mismatches: 11, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
36 54 1.00
ACGTcount: A:0.10, C:0.12, G:0.38, T:0.41
Consensus pattern (36 bp):
TGTAGGTGACTGGTCTGGTTGGATGGTTGTTTCGTC
Left flanking sequence: Indices 190260 -- 190759
AAGAGCTGGAGCAAGAGCTGGTACAACGGGGTGACGGCGCCGTGGTCGCGCACCGCCAGCGCCAT
CGCGTGCACCATCAGCACGTCCTGCTCGATCATCACCGTGGTGAGCTCGATGCCGAGCACCCGGA
TGGCGTTGTCGGAGTCCGAGAGCGCAAAGTACACCATGTCGAAGAGGCCGCGGGCGATGATCGAG
GTGTAGAACTCCTGTTTCTGGAACAGCGGGAGCAGCTTCGTCATGAGAATGTACTGGTGGAGCAT
GCGGACGCCGTGGCGGCGGCGGGTGGTGAGCGACGGGTCCAGCGGTATTATGGACGGGATGGTGG
GCGGCGGGGTGAGCTCGGCCAGGGTGAGCTCGGCCAGCGCGAGCACGGGGGTGTCTGCGTTGAGC
GGCAGGGTGAGCGAGGTGTCGCCGAGGTCGTCTGCCATGATGGTGTCGCCCAGAGCGTCGGTGGG
GGGGTGGGATGGGAGTTTTTGGGAGGTCTGGTCAGAAAGGGTGTG
Right flanking sequence: Indices 190861 -- 191360
CCTGGTCTGGGGATATTTGGCCTGGTTGAATGGTTTCGTGTGTGTGGGTGGCTTTTTTGGCTGCC
TTTTCTGAACAGTCTGTGCTCTCAGTCTTCACCTCTATCCCATCCTTTCCACCGTGGCCCTGAGC
CTCAATATGGGCTCCACCATGGTCCCGGCCTCCATCCTCGCCTCCTTCTCCACCACCAACCCCAT
TCGCTCCCCCTATTAGCTCGCCACACCCCTTGTACAATGCAAACAACTCCGCCAACACCTCCAGC
GAAATCAAGTAGTTGATAATATCCACCTGGTTGGTGTAGATAAGCGTCAGCAACATGTTGTTGGT
CAGGTCGTCAAAGTACCGCGCCAACACCACGTTCTTCAAAAAGTTCAAGTCAAAGTCCCGCTTGA
ACATCGCCACGTTCTCCACCGGGACCACCTGGGTCAACTGGCGCTGCGCCAAGTGCTGGCGGTGG
CACGCCTTCATCGTCGGGGTGGCGGGGTCGTACTCCAAGATCCCC
Found at i:192737 original size:12 final size:12
Alignment explanation
Indices: 192720--192747 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
192710 GGGACGGGTT
192720 GGGAGACCGGAG
1 GGGAGACCGGAG
192732 GGGAGACCGGAG
1 GGGAGACCGGAG
192744 GGGA
1 GGGA
192748 TTCCAGATGG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.25, C:0.14, G:0.61, T:0.00
Consensus pattern (12 bp):
GGGAGACCGGAG
Left flanking sequence: Indices 192220 -- 192719
GTTCGTGGGTGTTAGTAGCACCAGTTTCGTGCTCTGTGCTCACCGTGCTCACAAGCGTTACCGTC
CACGTCTACGCGTCTGTTCTGCAGGACAATAGCCACGCGGGCGGCCCGCCTGTATCGGTCGCTTA
TCGGTATCGCCATCGGGCTCGGGGACCCTGCAGAGACAGGGTGACTCAGGGGGTGTGCCCGCGGC
CCTGGTTCGGTTGGTCGTAGCGATGGTTTGACAGGTGGGGTGATCTCGCGCAGCGAGACAATGGG
AGTATCTAGCAGATTTAGTAGATCGAGAACGAGGGGAACCAGGGGTACGAGGGACGCGGGGTGGT
GTGGAGGGGTTTTTAGGGGGTAGAGTAGGTGTGAGAGGTGGTGAGAGGGCGTGAGAGGTGGCGGG
TGGTCTAACGGGGCTGGCCGTTGCTAGGGGGCTGTGTGAGCCCTGAGTAGGGAGTTTGGTGGTCA
GGCACGGATCGCCACTACGATAGGAATTGGTACGGGGGACGGGTT
Right flanking sequence: Indices 192748 -- 193247
TTCCAGATGGGTGGTAGTTCGAGGTTTGAACGGGTTTTCACGGTTCGAGCGTGGTGTTCGAGCGT
GCGTTCGACGTGGTTCTACGGGGCGTCATGTCGCTAAGCCACGCTGAAACGACGTCAAGGGGTGA
CTGGTATTGTTCTGTACATTTATCATTAGAGACGGCGGTGGGGTGAAACGGGCATGGAGCCCGCC
CGTAATTACCAGTTTGGGTGTCATTGACTGAAGGTTAGCGAAAGCATAGACTAGTTACTATAAAT
GGAACGAAAGACTAGTTGTACTAAAGGTAACCAAACAGGAACTATCAAGGTAACCAAACCAGGCA
CTATGAAGGCAACCAAACCACACTAAAGGCAACCAAACACACTACGAAGTTAACCAAACCACACT
ATGAAGATAACCAGCCACACTATGAAGATAACGAACCACACTGTAAAGGCATCCAAACCACACTA
TAAATGCAACCAAAGGCCACCAACGACCTCCACCCATCACCACCT
Found at i:192808 original size:13 final size:13
Alignment explanation
Indices: 192790--192826 Score: 51
Period size: 13 Copynumber: 3.0 Consensus size: 13
192780 GGTTTTCACG
192790 GTTCGAGCGTGGT
1 GTTCGAGCGTGGT
*
192803 GTTCGAGCGT-GC
1 GTTCGAGCGTGGT
192815 GTTCGA-CGTGGT
1 GTTCGAGCGTGGT
192827 TCTACGGGGC
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
11 3 0.14
12 8 0.38
13 10 0.48
ACGTcount: A:0.08, C:0.19, G:0.43, T:0.30
Consensus pattern (13 bp):
GTTCGAGCGTGGT
Left flanking sequence: Indices 192290 -- 192789
CTACGCGTCTGTTCTGCAGGACAATAGCCACGCGGGCGGCCCGCCTGTATCGGTCGCTTATCGGT
ATCGCCATCGGGCTCGGGGACCCTGCAGAGACAGGGTGACTCAGGGGGTGTGCCCGCGGCCCTGG
TTCGGTTGGTCGTAGCGATGGTTTGACAGGTGGGGTGATCTCGCGCAGCGAGACAATGGGAGTAT
CTAGCAGATTTAGTAGATCGAGAACGAGGGGAACCAGGGGTACGAGGGACGCGGGGTGGTGTGGA
GGGGTTTTTAGGGGGTAGAGTAGGTGTGAGAGGTGGTGAGAGGGCGTGAGAGGTGGCGGGTGGTC
TAACGGGGCTGGCCGTTGCTAGGGGGCTGTGTGAGCCCTGAGTAGGGAGTTTGGTGGTCAGGCAC
GGATCGCCACTACGATAGGAATTGGTACGGGGGACGGGTTGGGAGACCGGAGGGGAGACCGGAGG
GGATTCCAGATGGGTGGTAGTTCGAGGTTTGAACGGGTTTTCACG
Right flanking sequence: Indices 192827 -- 193326
TCTACGGGGCGTCATGTCGCTAAGCCACGCTGAAACGACGTCAAGGGGTGACTGGTATTGTTCTG
TACATTTATCATTAGAGACGGCGGTGGGGTGAAACGGGCATGGAGCCCGCCCGTAATTACCAGTT
TGGGTGTCATTGACTGAAGGTTAGCGAAAGCATAGACTAGTTACTATAAATGGAACGAAAGACTA
GTTGTACTAAAGGTAACCAAACAGGAACTATCAAGGTAACCAAACCAGGCACTATGAAGGCAACC
AAACCACACTAAAGGCAACCAAACACACTACGAAGTTAACCAAACCACACTATGAAGATAACCAG
CCACACTATGAAGATAACGAACCACACTGTAAAGGCATCCAAACCACACTATAAATGCAACCAAA
GGCCACCAACGACCTCCACCCATCACCACCTACGGTCTCAGAAGCATAGCCTCCCAGTCAATCTC
GTTCTGCACCAAGTGGCTCCAGTCAATGTGCCTGCCCTCATAGGT
Found at i:193057 original size:23 final size:23
Alignment explanation
Indices: 193031--193090 Score: 84
Period size: 24 Copynumber: 2.6 Consensus size: 23
193021 AGTTGTACTA
193031 AAGGTAACCAAACAGGAACTATC
1 AAGGTAACCAAACAGGAACTATC
* *
193054 AAGGTAACCAAACCAGGCACTATG
1 AAGGTAACCAAA-CAGGAACTATC
*
193078 AAGGCAACCAAAC
1 AAGGTAACCAAAC
193091 CACACTAAAG
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
23 13 0.39
24 20 0.61
ACGTcount: A:0.47, C:0.25, G:0.18, T:0.10
Consensus pattern (23 bp):
AAGGTAACCAAACAGGAACTATC
Left flanking sequence: Indices 192531 -- 193030
GGACGCGGGGTGGTGTGGAGGGGTTTTTAGGGGGTAGAGTAGGTGTGAGAGGTGGTGAGAGGGCG
TGAGAGGTGGCGGGTGGTCTAACGGGGCTGGCCGTTGCTAGGGGGCTGTGTGAGCCCTGAGTAGG
GAGTTTGGTGGTCAGGCACGGATCGCCACTACGATAGGAATTGGTACGGGGGACGGGTTGGGAGA
CCGGAGGGGAGACCGGAGGGGATTCCAGATGGGTGGTAGTTCGAGGTTTGAACGGGTTTTCACGG
TTCGAGCGTGGTGTTCGAGCGTGCGTTCGACGTGGTTCTACGGGGCGTCATGTCGCTAAGCCACG
CTGAAACGACGTCAAGGGGTGACTGGTATTGTTCTGTACATTTATCATTAGAGACGGCGGTGGGG
TGAAACGGGCATGGAGCCCGCCCGTAATTACCAGTTTGGGTGTCATTGACTGAAGGTTAGCGAAA
GCATAGACTAGTTACTATAAATGGAACGAAAGACTAGTTGTACTA
Right flanking sequence: Indices 193091 -- 193590
CACACTAAAGGCAACCAAACACACTACGAAGTTAACCAAACCACACTATGAAGATAACCAGCCAC
ACTATGAAGATAACGAACCACACTGTAAAGGCATCCAAACCACACTATAAATGCAACCAAAGGCC
ACCAACGACCTCCACCCATCACCACCTACGGTCTCAGAAGCATAGCCTCCCAGTCAATCTCGTTC
TGCACCAAGTGGCTCCAGTCAATGTGCCTGCCCTCATAGGTGAACGGGCCAAGCGCCCACGGGAA
AAACAGGGTAAACTCAAGGATGTCGGCCTCGATAAGCCCGTCCAACTCCCACACGTACACCAAGT
AGCGGGTGTTGTTCCCCGAAATGCCCATGTAGGCGCCACAGGCACGCACCCACTCGCCCTTGCCT
CGAGGCTGCTTGTACCACACAAGACTGCCTATGCTGTGGTAGGGGTTGAGCAACTCGCAGTTCTC
GATGCCAGTAGCCACCTCGGCGGGCAGCCGGCCCAGCACCACGTC
Found at i:193115 original size:19 final size:20
Alignment explanation
Indices: 193054--193138 Score: 82
Period size: 24 Copynumber: 4.0 Consensus size: 20
193044 AGGAACTATC
*
193054 AAGGTAACCAAACCAGGCACTA
1 AAGGCAACCAAACCA--CACTA
193076 TGAAGGCAACCAAACCACACTA
1 --AAGGCAACCAAACCACACTA
193098 AAGGCAACCAAA-CACACTA
1 AAGGCAACCAAACCACACTA
**
193117 CGAAGTTAACCAAACCACACTA
1 --AAGGCAACCAAACCACACTA
193139 TGAAGATAAC
Statistics
Matches: 55, Mismatches: 3, Indels: 8
0.83 0.05 0.12
Matches are distributed among these distances:
19 7 0.13
20 12 0.22
21 10 0.18
22 12 0.22
24 14 0.25
ACGTcount: A:0.47, C:0.31, G:0.13, T:0.09
Consensus pattern (20 bp):
AAGGCAACCAAACCACACTA
Left flanking sequence: Indices 192554 -- 193053
TTTTTAGGGGGTAGAGTAGGTGTGAGAGGTGGTGAGAGGGCGTGAGAGGTGGCGGGTGGTCTAAC
GGGGCTGGCCGTTGCTAGGGGGCTGTGTGAGCCCTGAGTAGGGAGTTTGGTGGTCAGGCACGGAT
CGCCACTACGATAGGAATTGGTACGGGGGACGGGTTGGGAGACCGGAGGGGAGACCGGAGGGGAT
TCCAGATGGGTGGTAGTTCGAGGTTTGAACGGGTTTTCACGGTTCGAGCGTGGTGTTCGAGCGTG
CGTTCGACGTGGTTCTACGGGGCGTCATGTCGCTAAGCCACGCTGAAACGACGTCAAGGGGTGAC
TGGTATTGTTCTGTACATTTATCATTAGAGACGGCGGTGGGGTGAAACGGGCATGGAGCCCGCCC
GTAATTACCAGTTTGGGTGTCATTGACTGAAGGTTAGCGAAAGCATAGACTAGTTACTATAAATG
GAACGAAAGACTAGTTGTACTAAAGGTAACCAAACAGGAACTATC
Right flanking sequence: Indices 193139 -- 193638
TGAAGATAACCAGCCACACTATGAAGATAACGAACCACACTGTAAAGGCATCCAAACCACACTAT
AAATGCAACCAAAGGCCACCAACGACCTCCACCCATCACCACCTACGGTCTCAGAAGCATAGCCT
CCCAGTCAATCTCGTTCTGCACCAAGTGGCTCCAGTCAATGTGCCTGCCCTCATAGGTGAACGGG
CCAAGCGCCCACGGGAAAAACAGGGTAAACTCAAGGATGTCGGCCTCGATAAGCCCGTCCAACTC
CCACACGTACACCAAGTAGCGGGTGTTGTTCCCCGAAATGCCCATGTAGGCGCCACAGGCACGCA
CCCACTCGCCCTTGCCTCGAGGCTGCTTGTACCACACAAGACTGCCTATGCTGTGGTAGGGGTTG
AGCAACTCGCAGTTCTCGATGCCAGTAGCCACCTCGGCGGGCAGCCGGCCCAGCACCACGTCGCG
GGCGTAGTTGTGGCAGATGGCAATGAACCGCACCACCTGGTACCA
Found at i:193199 original size:22 final size:22
Alignment explanation
Indices: 193048--193216 Score: 123
Period size: 21 Copynumber: 7.8 Consensus size: 22
193038 CCAAACAGGA
* *
193048 ACTATCAAGGTAACCAAACCAGGC
1 ACTATAAAGGCAACCAAACCA--C
*
193072 ACTATGAAGGCAACCAAACCAC
1 ACTATAAAGGCAACCAAACCAC
193094 AC--TAAAGGCAACCAAA-CAC
1 ACTATAAAGGCAACCAAACCAC
** **
193113 ACTACGAAGTTAACCAAACCAC
1 ACTATAAAGGCAACCAAACCAC
* ** *
193135 ACTATGAAGATAACC-AGCCAC
1 ACTATAAAGGCAACCAAACCAC
* ** *
193156 ACTATGAAGATAA-CGAACCAC
1 ACTATAAAGGCAACCAAACCAC
* *
193177 ACTGTAAAGGCATCCAAACCAC
1 ACTATAAAGGCAACCAAACCAC
*
193199 ACTATAAATGCAACCAAA
1 ACTATAAAGGCAACCAAA
193217 GGCCACCAAC
Statistics
Matches: 120, Mismatches: 20, Indels: 12
0.79 0.13 0.08
Matches are distributed among these distances:
19 5 0.04
20 14 0.12
21 41 0.34
22 41 0.34
24 19 0.16
ACGTcount: A:0.46, C:0.29, G:0.12, T:0.12
Consensus pattern (22 bp):
ACTATAAAGGCAACCAAACCAC
Left flanking sequence: Indices 192548 -- 193047
GAGGGGTTTTTAGGGGGTAGAGTAGGTGTGAGAGGTGGTGAGAGGGCGTGAGAGGTGGCGGGTGG
TCTAACGGGGCTGGCCGTTGCTAGGGGGCTGTGTGAGCCCTGAGTAGGGAGTTTGGTGGTCAGGC
ACGGATCGCCACTACGATAGGAATTGGTACGGGGGACGGGTTGGGAGACCGGAGGGGAGACCGGA
GGGGATTCCAGATGGGTGGTAGTTCGAGGTTTGAACGGGTTTTCACGGTTCGAGCGTGGTGTTCG
AGCGTGCGTTCGACGTGGTTCTACGGGGCGTCATGTCGCTAAGCCACGCTGAAACGACGTCAAGG
GGTGACTGGTATTGTTCTGTACATTTATCATTAGAGACGGCGGTGGGGTGAAACGGGCATGGAGC
CCGCCCGTAATTACCAGTTTGGGTGTCATTGACTGAAGGTTAGCGAAAGCATAGACTAGTTACTA
TAAATGGAACGAAAGACTAGTTGTACTAAAGGTAACCAAACAGGA
Right flanking sequence: Indices 193217 -- 193716
GGCCACCAACGACCTCCACCCATCACCACCTACGGTCTCAGAAGCATAGCCTCCCAGTCAATCTC
GTTCTGCACCAAGTGGCTCCAGTCAATGTGCCTGCCCTCATAGGTGAACGGGCCAAGCGCCCACG
GGAAAAACAGGGTAAACTCAAGGATGTCGGCCTCGATAAGCCCGTCCAACTCCCACACGTACACC
AAGTAGCGGGTGTTGTTCCCCGAAATGCCCATGTAGGCGCCACAGGCACGCACCCACTCGCCCTT
GCCTCGAGGCTGCTTGTACCACACAAGACTGCCTATGCTGTGGTAGGGGTTGAGCAACTCGCAGT
TCTCGATGCCAGTAGCCACCTCGGCGGGCAGCCGGCCCAGCACCACGTCGCGGGCGTAGTTGTGG
CAGATGGCAATGAACCGCACCACCTGGTACCACAACTTGTCGGGGAAGTTACTCTCGAGCTTGAT
GCGGACGAGCTCGCTAAGAAGCTGGTTGACGCCGTCGATGGCACC
Found at i:193199 original size:43 final size:43
Alignment explanation
Indices: 193054--193203 Score: 137
Period size: 43 Copynumber: 3.5 Consensus size: 43
193044 AGGAACTATC
* **
193054 AAGGTAACCAAACCAGGCACTATGAAGGCAACCAAACCACAC-TA
1 AAGGCAACCAAACCA--CACTATGAAGATAACCAAACCACACTTA
* * *
193098 AAGGCAACCAAA-CACACTACGAAGTTAACCAAACCACACTATG
1 AAGGCAACCAAACCACACTATGAAGATAACCAAACCACACT-TA
** * *
193141 AAGATAACC-AGCCACACTATGAAGATAA-CGAACCACACTGTA
1 AAGGCAACCAAACCACACTATGAAGATAACCAAACCACACT-TA
*
193183 AAGGCATCCAAACCACACTAT
1 AAGGCAACCAAACCACACTAT
193204 AAATGCAACC
Statistics
Matches: 85, Mismatches: 17, Indels: 9
0.77 0.15 0.08
Matches are distributed among these distances:
41 22 0.26
42 18 0.21
43 34 0.40
44 11 0.13
ACGTcount: A:0.45, C:0.29, G:0.13, T:0.12
Consensus pattern (43 bp):
AAGGCAACCAAACCACACTATGAAGATAACCAAACCACACTTA
Left flanking sequence: Indices 192554 -- 193053
TTTTTAGGGGGTAGAGTAGGTGTGAGAGGTGGTGAGAGGGCGTGAGAGGTGGCGGGTGGTCTAAC
GGGGCTGGCCGTTGCTAGGGGGCTGTGTGAGCCCTGAGTAGGGAGTTTGGTGGTCAGGCACGGAT
CGCCACTACGATAGGAATTGGTACGGGGGACGGGTTGGGAGACCGGAGGGGAGACCGGAGGGGAT
TCCAGATGGGTGGTAGTTCGAGGTTTGAACGGGTTTTCACGGTTCGAGCGTGGTGTTCGAGCGTG
CGTTCGACGTGGTTCTACGGGGCGTCATGTCGCTAAGCCACGCTGAAACGACGTCAAGGGGTGAC
TGGTATTGTTCTGTACATTTATCATTAGAGACGGCGGTGGGGTGAAACGGGCATGGAGCCCGCCC
GTAATTACCAGTTTGGGTGTCATTGACTGAAGGTTAGCGAAAGCATAGACTAGTTACTATAAATG
GAACGAAAGACTAGTTGTACTAAAGGTAACCAAACAGGAACTATC
Right flanking sequence: Indices 193204 -- 193703
AAATGCAACCAAAGGCCACCAACGACCTCCACCCATCACCACCTACGGTCTCAGAAGCATAGCCT
CCCAGTCAATCTCGTTCTGCACCAAGTGGCTCCAGTCAATGTGCCTGCCCTCATAGGTGAACGGG
CCAAGCGCCCACGGGAAAAACAGGGTAAACTCAAGGATGTCGGCCTCGATAAGCCCGTCCAACTC
CCACACGTACACCAAGTAGCGGGTGTTGTTCCCCGAAATGCCCATGTAGGCGCCACAGGCACGCA
CCCACTCGCCCTTGCCTCGAGGCTGCTTGTACCACACAAGACTGCCTATGCTGTGGTAGGGGTTG
AGCAACTCGCAGTTCTCGATGCCAGTAGCCACCTCGGCGGGCAGCCGGCCCAGCACCACGTCGCG
GGCGTAGTTGTGGCAGATGGCAATGAACCGCACCACCTGGTACCACAACTTGTCGGGGAAGTTAC
TCTCGAGCTTGATGCGGACGAGCTCGCTAAGAAGCTGGTTGACGC
Found at i:195216 original size:17 final size:18
Alignment explanation
Indices: 195194--195290 Score: 81
Period size: 17 Copynumber: 6.0 Consensus size: 18
195184 TTGAGTCGGC
195194 TGTCATGGT-AATGCATG
1 TGTCATGGTCAATGCATG
195211 TGTCATGGTCAATGCATG
1 TGTCATGGTCAATGCATG
* *
195229 -GTC-T-GTC-ATG-GTC
1 TGTCATGGTCAATGCATG
195242 TGTCATGGTCAATGCATG
1 TGTCATGGTCAATGCATG
* *
195260 -GTC-T-GTC-ATG-GTC
1 TGTCATGGTCAATGCATG
195273 TGTCATGGTCAATGCATG
1 TGTCATGGTCAATGCATG
195291 GGTCTGTAGG
Statistics
Matches: 61, Mismatches: 8, Indels: 21
0.68 0.09 0.23
Matches are distributed among these distances:
13 2 0.03
14 12 0.20
15 8 0.13
16 8 0.13
17 21 0.34
18 10 0.16
ACGTcount: A:0.19, C:0.18, G:0.29, T:0.35
Consensus pattern (18 bp):
TGTCATGGTCAATGCATG
Left flanking sequence: Indices 194694 -- 195193
GGACAGAAAACGGGGGCACAAAGTTCCATATGTCCCAGTAGTCGGTGGCGGAATCCACCAACAAC
GCGAACTCGTCGGGAGACCCGTCGTTTACAAAGGGCATCGTACAGGTTATGCCCCGAAGCACCTC
GCGGGGCTTCGGGTCGGGCTGCTCGTGGGCCTCGCGGAGGCCCAGGAAAGGGTGCTTTTTATCCC
CATGCGGGTTGCTGGGCGTCCGCGTGGTTTCGCCCGGTTCCCCTAGGGTGGTCATGGGTGGTCCG
GTGCGACCTGAACGGCTCGGAGGGACAGACTGGTGGGCTGCGCACATGGTGGGCGTCGGTGTGCT
TGCTGGGTCTGTGGGATTTATTCAGGTGCCACGGCGGTCTATCTACCGTGAGACTAAAGTGGGCC
CAGTGGATGCGTTGACGAGATGTTCACGTGCTTGCGTCGTGTGGAATTTCCACGCTGAGTCGAGT
TGAGAGTAGTGGGATGCTTGGGTGGTGTGGGTGATTTGAGTCGGC
Right flanking sequence: Indices 195291 -- 195790
GGTCTGTAGGACAGCCGTTGGTCTGTAAGACAGCCGTTAACCTGCGTGAGATGCATACAATGGGA
TGGCTGAAGCATTTACGAAACTATAGGGTCTGTAGCGTAGCAGGCTAGTAGAAGATGGAAGATAA
TGGTGATGGTTTAAAAATAGCCCAATTCGGATGGCTCGTCAGACTGAAGCATTATAAACTAAAGG
CTCTGCAACGGGTGATAGTAGGCTAGAAAAATGGAAGACAATGGTGGATGGTTAAAAATAGCCCT
GTTCGGATGGCTCGCTGAAGCGTTTACAAAACTAAAGGCTATGTAGCGAATTTTCGCAGGCTAAT
AATGGTGGATGGATTAAAAATAGCTCGATTCGGATGACTCGTAAGGCTCAAGAGACTGTAGGCAG
TAACGAGAAAAAGAAGGCTAGTAAATTGGAAGATAATGGTGGATGGTTTAGAAAATATCCCGATT
CGGATGACTCGTAAGGCTCATGCTTTTACGAATCTAAACGCTCTG
Found at i:195237 original size:21 final size:21
Alignment explanation
Indices: 195193--195297 Score: 102
Period size: 21 Copynumber: 5.2 Consensus size: 21
195183 TTTGAGTCGG
195193 CTGTCATGGT-AATGCAT-G-
1 CTGTCATGGTCAATGCATGGT
195211 -TGTCATGGTCAATGCATGGT
1 CTGTCATGGTCAATGCATGGT
195231 CTGTCATGGTC--TGTCATGGT
1 CTGTCATGGTCAATG-CATGGT
195251 CAATG-CATGGTC--TGTCATGGT
1 C--TGTCATGGTCAATG-CATGGT
195272 CTGTCATGGTCAATGCATGGGT
1 CTGTCATGGTCAATGCAT-GGT
195294 CTGT
1 CTGT
195298 AGGACAGCCG
Statistics
Matches: 76, Mismatches: 0, Indels: 18
0.81 0.00 0.19
Matches are distributed among these distances:
17 9 0.12
18 7 0.09
19 5 0.07
20 14 0.18
21 30 0.39
22 11 0.14
ACGTcount: A:0.17, C:0.18, G:0.30, T:0.35
Consensus pattern (21 bp):
CTGTCATGGTCAATGCATGGT
Left flanking sequence: Indices 194693 -- 195192
TGGACAGAAAACGGGGGCACAAAGTTCCATATGTCCCAGTAGTCGGTGGCGGAATCCACCAACAA
CGCGAACTCGTCGGGAGACCCGTCGTTTACAAAGGGCATCGTACAGGTTATGCCCCGAAGCACCT
CGCGGGGCTTCGGGTCGGGCTGCTCGTGGGCCTCGCGGAGGCCCAGGAAAGGGTGCTTTTTATCC
CCATGCGGGTTGCTGGGCGTCCGCGTGGTTTCGCCCGGTTCCCCTAGGGTGGTCATGGGTGGTCC
GGTGCGACCTGAACGGCTCGGAGGGACAGACTGGTGGGCTGCGCACATGGTGGGCGTCGGTGTGC
TTGCTGGGTCTGTGGGATTTATTCAGGTGCCACGGCGGTCTATCTACCGTGAGACTAAAGTGGGC
CCAGTGGATGCGTTGACGAGATGTTCACGTGCTTGCGTCGTGTGGAATTTCCACGCTGAGTCGAG
TTGAGAGTAGTGGGATGCTTGGGTGGTGTGGGTGATTTGAGTCGG
Right flanking sequence: Indices 195298 -- 195797
AGGACAGCCGTTGGTCTGTAAGACAGCCGTTAACCTGCGTGAGATGCATACAATGGGATGGCTGA
AGCATTTACGAAACTATAGGGTCTGTAGCGTAGCAGGCTAGTAGAAGATGGAAGATAATGGTGAT
GGTTTAAAAATAGCCCAATTCGGATGGCTCGTCAGACTGAAGCATTATAAACTAAAGGCTCTGCA
ACGGGTGATAGTAGGCTAGAAAAATGGAAGACAATGGTGGATGGTTAAAAATAGCCCTGTTCGGA
TGGCTCGCTGAAGCGTTTACAAAACTAAAGGCTATGTAGCGAATTTTCGCAGGCTAATAATGGTG
GATGGATTAAAAATAGCTCGATTCGGATGACTCGTAAGGCTCAAGAGACTGTAGGCAGTAACGAG
AAAAAGAAGGCTAGTAAATTGGAAGATAATGGTGGATGGTTTAGAAAATATCCCGATTCGGATGA
CTCGTAAGGCTCATGCTTTTACGAATCTAAACGCTCTGTAACGAG
Found at i:195240 original size:10 final size:10
Alignment explanation
Indices: 195211--195282 Score: 94
Period size: 10 Copynumber: 7.0 Consensus size: 10
195201 GTAATGCATG
195211 TGTCATGGTC
1 TGTCATGGTC
195221 AATG-CATGGTC
1 --TGTCATGGTC
195232 TGTCATGGTC
1 TGTCATGGTC
195242 TGTCATGGTC
1 TGTCATGGTC
195252 AATG-CATGGTC
1 --TGTCATGGTC
195263 TGTCATGGTC
1 TGTCATGGTC
195273 TGTCATGGTC
1 TGTCATGGTC
195283 AATGCATGGG
Statistics
Matches: 56, Mismatches: 0, Indels: 10
0.85 0.00 0.15
Matches are distributed among these distances:
9 4 0.07
10 34 0.61
11 14 0.25
12 4 0.07
ACGTcount: A:0.15, C:0.19, G:0.29, T:0.36
Consensus pattern (10 bp):
TGTCATGGTC
Left flanking sequence: Indices 194711 -- 195210
ACAAAGTTCCATATGTCCCAGTAGTCGGTGGCGGAATCCACCAACAACGCGAACTCGTCGGGAGA
CCCGTCGTTTACAAAGGGCATCGTACAGGTTATGCCCCGAAGCACCTCGCGGGGCTTCGGGTCGG
GCTGCTCGTGGGCCTCGCGGAGGCCCAGGAAAGGGTGCTTTTTATCCCCATGCGGGTTGCTGGGC
GTCCGCGTGGTTTCGCCCGGTTCCCCTAGGGTGGTCATGGGTGGTCCGGTGCGACCTGAACGGCT
CGGAGGGACAGACTGGTGGGCTGCGCACATGGTGGGCGTCGGTGTGCTTGCTGGGTCTGTGGGAT
TTATTCAGGTGCCACGGCGGTCTATCTACCGTGAGACTAAAGTGGGCCCAGTGGATGCGTTGACG
AGATGTTCACGTGCTTGCGTCGTGTGGAATTTCCACGCTGAGTCGAGTTGAGAGTAGTGGGATGC
TTGGGTGGTGTGGGTGATTTGAGTCGGCTGTCATGGTAATGCATG
Right flanking sequence: Indices 195283 -- 195782
AATGCATGGGTCTGTAGGACAGCCGTTGGTCTGTAAGACAGCCGTTAACCTGCGTGAGATGCATA
CAATGGGATGGCTGAAGCATTTACGAAACTATAGGGTCTGTAGCGTAGCAGGCTAGTAGAAGATG
GAAGATAATGGTGATGGTTTAAAAATAGCCCAATTCGGATGGCTCGTCAGACTGAAGCATTATAA
ACTAAAGGCTCTGCAACGGGTGATAGTAGGCTAGAAAAATGGAAGACAATGGTGGATGGTTAAAA
ATAGCCCTGTTCGGATGGCTCGCTGAAGCGTTTACAAAACTAAAGGCTATGTAGCGAATTTTCGC
AGGCTAATAATGGTGGATGGATTAAAAATAGCTCGATTCGGATGACTCGTAAGGCTCAAGAGACT
GTAGGCAGTAACGAGAAAAAGAAGGCTAGTAAATTGGAAGATAATGGTGGATGGTTTAGAAAATA
TCCCGATTCGGATGACTCGTAAGGCTCATGCTTTTACGAATCTAA
Found at i:195249 original size:31 final size:31
Alignment explanation
Indices: 195211--195297 Score: 165
Period size: 31 Copynumber: 2.8 Consensus size: 31
195201 GTAATGCATG
195211 TGTCATGGTCAATGCATGGTCTGTCATGGTC
1 TGTCATGGTCAATGCATGGTCTGTCATGGTC
195242 TGTCATGGTCAATGCATGGTCTGTCATGGTC
1 TGTCATGGTCAATGCATGGTCTGTCATGGTC
195273 TGTCATGGTCAATGCATGGGTCTGT
1 TGTCATGGTCAATGCAT-GGTCTGT
195298 AGGACAGCCG
Statistics
Matches: 55, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
31 48 0.87
32 7 0.13
ACGTcount: A:0.16, C:0.18, G:0.30, T:0.36
Consensus pattern (31 bp):
TGTCATGGTCAATGCATGGTCTGTCATGGTC
Left flanking sequence: Indices 194711 -- 195210
ACAAAGTTCCATATGTCCCAGTAGTCGGTGGCGGAATCCACCAACAACGCGAACTCGTCGGGAGA
CCCGTCGTTTACAAAGGGCATCGTACAGGTTATGCCCCGAAGCACCTCGCGGGGCTTCGGGTCGG
GCTGCTCGTGGGCCTCGCGGAGGCCCAGGAAAGGGTGCTTTTTATCCCCATGCGGGTTGCTGGGC
GTCCGCGTGGTTTCGCCCGGTTCCCCTAGGGTGGTCATGGGTGGTCCGGTGCGACCTGAACGGCT
CGGAGGGACAGACTGGTGGGCTGCGCACATGGTGGGCGTCGGTGTGCTTGCTGGGTCTGTGGGAT
TTATTCAGGTGCCACGGCGGTCTATCTACCGTGAGACTAAAGTGGGCCCAGTGGATGCGTTGACG
AGATGTTCACGTGCTTGCGTCGTGTGGAATTTCCACGCTGAGTCGAGTTGAGAGTAGTGGGATGC
TTGGGTGGTGTGGGTGATTTGAGTCGGCTGTCATGGTAATGCATG
Right flanking sequence: Indices 195298 -- 195797
AGGACAGCCGTTGGTCTGTAAGACAGCCGTTAACCTGCGTGAGATGCATACAATGGGATGGCTGA
AGCATTTACGAAACTATAGGGTCTGTAGCGTAGCAGGCTAGTAGAAGATGGAAGATAATGGTGAT
GGTTTAAAAATAGCCCAATTCGGATGGCTCGTCAGACTGAAGCATTATAAACTAAAGGCTCTGCA
ACGGGTGATAGTAGGCTAGAAAAATGGAAGACAATGGTGGATGGTTAAAAATAGCCCTGTTCGGA
TGGCTCGCTGAAGCGTTTACAAAACTAAAGGCTATGTAGCGAATTTTCGCAGGCTAATAATGGTG
GATGGATTAAAAATAGCTCGATTCGGATGACTCGTAAGGCTCAAGAGACTGTAGGCAGTAACGAG
AAAAAGAAGGCTAGTAAATTGGAAGATAATGGTGGATGGTTTAGAAAATATCCCGATTCGGATGA
CTCGTAAGGCTCATGCTTTTACGAATCTAAACGCTCTGTAACGAG
Found at i:195315 original size:19 final size:19
Alignment explanation
Indices: 195291--195328 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
195281 TCAATGCATG
*
195291 GGTCTGTAGGACAGCCGTT
1 GGTCTGTAAGACAGCCGTT
195310 GGTCTGTAAGACAGCCGTT
1 GGTCTGTAAGACAGCCGTT
195329 AACCTGCGTG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.18, C:0.21, G:0.34, T:0.26
Consensus pattern (19 bp):
GGTCTGTAAGACAGCCGTT
Left flanking sequence: Indices 194791 -- 195290
GGGCATCGTACAGGTTATGCCCCGAAGCACCTCGCGGGGCTTCGGGTCGGGCTGCTCGTGGGCCT
CGCGGAGGCCCAGGAAAGGGTGCTTTTTATCCCCATGCGGGTTGCTGGGCGTCCGCGTGGTTTCG
CCCGGTTCCCCTAGGGTGGTCATGGGTGGTCCGGTGCGACCTGAACGGCTCGGAGGGACAGACTG
GTGGGCTGCGCACATGGTGGGCGTCGGTGTGCTTGCTGGGTCTGTGGGATTTATTCAGGTGCCAC
GGCGGTCTATCTACCGTGAGACTAAAGTGGGCCCAGTGGATGCGTTGACGAGATGTTCACGTGCT
TGCGTCGTGTGGAATTTCCACGCTGAGTCGAGTTGAGAGTAGTGGGATGCTTGGGTGGTGTGGGT
GATTTGAGTCGGCTGTCATGGTAATGCATGTGTCATGGTCAATGCATGGTCTGTCATGGTCTGTC
ATGGTCAATGCATGGTCTGTCATGGTCTGTCATGGTCAATGCATG
Right flanking sequence: Indices 195329 -- 195828
AACCTGCGTGAGATGCATACAATGGGATGGCTGAAGCATTTACGAAACTATAGGGTCTGTAGCGT
AGCAGGCTAGTAGAAGATGGAAGATAATGGTGATGGTTTAAAAATAGCCCAATTCGGATGGCTCG
TCAGACTGAAGCATTATAAACTAAAGGCTCTGCAACGGGTGATAGTAGGCTAGAAAAATGGAAGA
CAATGGTGGATGGTTAAAAATAGCCCTGTTCGGATGGCTCGCTGAAGCGTTTACAAAACTAAAGG
CTATGTAGCGAATTTTCGCAGGCTAATAATGGTGGATGGATTAAAAATAGCTCGATTCGGATGAC
TCGTAAGGCTCAAGAGACTGTAGGCAGTAACGAGAAAAAGAAGGCTAGTAAATTGGAAGATAATG
GTGGATGGTTTAGAAAATATCCCGATTCGGATGACTCGTAAGGCTCATGCTTTTACGAATCTAAA
CGCTCTGTAACGAGTTATAACAGGCTAGTGAAATGGAAGATTATT
Found at i:201384 original size:12 final size:12
Alignment explanation
Indices: 201364--201397 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
201354 TCTGCGCTAG
*
201364 CAGACGAGTTTT
1 CAGATGAGTTTT
201376 CAGATGAGTTTT
1 CAGATGAGTTTT
*
201388 CAGTTGAGTT
1 CAGATGAGTT
201398 ACCAGCCAAG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.24, C:0.12, G:0.26, T:0.38
Consensus pattern (12 bp):
CAGATGAGTTTT
Left flanking sequence: Indices 200864 -- 201363
GGGCTCGCGCTCCAAGTTGCGGCGTTTCTGGAGCTGGTAGCACAACAGGTACACGAGCTTGGCGA
TGGGCAGCAGCCACTCGCCCGCGTTCAGGGGAAACCCGTACAGCTCGATGCAGTTGAAGAGGGTG
CGGAGCTTGGCGAGGATGCCCGGGGCGTTGGCGGGGGTGAGCAGGTAGACGATGGCCAGCGCGAA
CCCGTGGAAGTACTTTGTTTTGAGCAGCCCGTACTTGTCGGAGTTGATCAGCAAGCAGTTCATGC
AGGTGTTGACGATGTGGACGAACTGGGCCTCGGAGAAGATGCCGTAGGGGCCGAGGGCCACGCGG
TCGCCGGCGTAGCACGCCTCCATGGCGATGGCGCCGAGCTTCAGGGTGATCTGGTCCTCGAAGTA
CGGGAGGCGGTTTAGTTTTTGCCAGATGTAGAACCAGGAGTCGAGGTAGTGGCGGGAGTCGGTGG
ACGGGAACGAGTCTGAAGACGAGGCTGGAAACGAGTCTGCGCTAG
Right flanking sequence: Indices 201398 -- 201897
ACCAGCCAAGCTATTAGCCTTATTTTCACCCAACGCACCAGTCTTACCACCCAATCCACCAGTCT
TACCTCCCAACTCCTTAGCGTCTTTCTCTTCCTCTCCATCCACATCCATAGAGTCTTCATATAGT
TTGTCTGACTCTTCTTTGCCCGTCTCCGACTCTTGTTTATCTGTCCCCTTCCCCCCAAACGCATT
CGGCACGAGACACATCGCCAGCATCACCAACAGCGCGTTCGAAAACGTGATGTTGTGGGCCACCG
CCTCGTAGATCGCCGGCATCTCGCGGGGGTCGAAAAAGCTCGCCGCCCGCGTGGCCAACCGGAGC
AACTGCTTCTGGTCCTTGACCTCGACGGGCCCCAGAATGATGTCCTCCAGCGGCAAGTGGTTCTC
GAGCTCCTGGTAGAGCGGGCGCCACGGCAACCGCAACCCCTGTGCCGCCATGAACCGCGTGTGCT
TGGTGAGCACCTCGAACGCCTTGACGTAGGTCTTGAGCGCAATGT
Found at i:201450 original size:21 final size:20
Alignment explanation
Indices: 201424--201473 Score: 73
Period size: 21 Copynumber: 2.4 Consensus size: 20
201414 GCCTTATTTT
201424 CACCCAACGCACCAGTCTTAC
1 CACCCAAC-CACCAGTCTTAC
201445 CACCCAATCCACCAGTCTTAC
1 CACCCAA-CCACCAGTCTTAC
*
201466 CTCCCAAC
1 CACCCAAC
201474 TCCTTAGCGT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
20 1 0.04
21 25 0.93
22 1 0.04
ACGTcount: A:0.28, C:0.50, G:0.06, T:0.16
Consensus pattern (20 bp):
CACCCAACCACCAGTCTTAC
Left flanking sequence: Indices 200924 -- 201423
GGCGATGGGCAGCAGCCACTCGCCCGCGTTCAGGGGAAACCCGTACAGCTCGATGCAGTTGAAGA
GGGTGCGGAGCTTGGCGAGGATGCCCGGGGCGTTGGCGGGGGTGAGCAGGTAGACGATGGCCAGC
GCGAACCCGTGGAAGTACTTTGTTTTGAGCAGCCCGTACTTGTCGGAGTTGATCAGCAAGCAGTT
CATGCAGGTGTTGACGATGTGGACGAACTGGGCCTCGGAGAAGATGCCGTAGGGGCCGAGGGCCA
CGCGGTCGCCGGCGTAGCACGCCTCCATGGCGATGGCGCCGAGCTTCAGGGTGATCTGGTCCTCG
AAGTACGGGAGGCGGTTTAGTTTTTGCCAGATGTAGAACCAGGAGTCGAGGTAGTGGCGGGAGTC
GGTGGACGGGAACGAGTCTGAAGACGAGGCTGGAAACGAGTCTGCGCTAGCAGACGAGTTTTCAG
ATGAGTTTTCAGTTGAGTTACCAGCCAAGCTATTAGCCTTATTTT
Right flanking sequence: Indices 201474 -- 201973
TCCTTAGCGTCTTTCTCTTCCTCTCCATCCACATCCATAGAGTCTTCATATAGTTTGTCTGACTC
TTCTTTGCCCGTCTCCGACTCTTGTTTATCTGTCCCCTTCCCCCCAAACGCATTCGGCACGAGAC
ACATCGCCAGCATCACCAACAGCGCGTTCGAAAACGTGATGTTGTGGGCCACCGCCTCGTAGATC
GCCGGCATCTCGCGGGGGTCGAAAAAGCTCGCCGCCCGCGTGGCCAACCGGAGCAACTGCTTCTG
GTCCTTGACCTCGACGGGCCCCAGAATGATGTCCTCCAGCGGCAAGTGGTTCTCGAGCTCCTGGT
AGAGCGGGCGCCACGGCAACCGCAACCCCTGTGCCGCCATGAACCGCGTGTGCTTGGTGAGCACC
TCGAACGCCTTGACGTAGGTCTTGAGCGCAATGTCCTGGCCCCGGCACAAGCACAACGCGTAGTA
CACCCGTGCCAACGCCATGCGGAGCCGGATGGGCATGTCGTACTT
Found at i:202112 original size:3 final size:3
Alignment explanation
Indices: 202098--202129 Score: 55
Period size: 3 Copynumber: 10.7 Consensus size: 3
202088 CGCGTCGCCA
*
202098 TCG TCC TCG TCG TCG TCG TCG TCG TCG TCG TC
1 TCG TCG TCG TCG TCG TCG TCG TCG TCG TCG TC
202130 CAGGTCGCCC
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.00, C:0.38, G:0.28, T:0.34
Consensus pattern (3 bp):
TCG
Left flanking sequence: Indices 201598 -- 202097
CGAGACACATCGCCAGCATCACCAACAGCGCGTTCGAAAACGTGATGTTGTGGGCCACCGCCTCG
TAGATCGCCGGCATCTCGCGGGGGTCGAAAAAGCTCGCCGCCCGCGTGGCCAACCGGAGCAACTG
CTTCTGGTCCTTGACCTCGACGGGCCCCAGAATGATGTCCTCCAGCGGCAAGTGGTTCTCGAGCT
CCTGGTAGAGCGGGCGCCACGGCAACCGCAACCCCTGTGCCGCCATGAACCGCGTGTGCTTGGTG
AGCACCTCGAACGCCTTGACGTAGGTCTTGAGCGCAATGTCCTGGCCCCGGCACAAGCACAACGC
GTAGTACACCCGTGCCAACGCCATGCGGAGCCGGATGGGCATGTCGTACTTCATTTTGAGCCACA
CCAAGAGCTCCTGGGTCCAGGTGCGCACGCCCACCACCGCCGCCAGCTTGGGCAGCCGCTTGTGC
TGCTGGGTCAGCGCGGGCCCGGCGGCGGTGTCGTCCGCGTCGCCA
Right flanking sequence: Indices 202130 -- 202629
CAGGTCGCCCTCAAAGATGATCAGGTCCTTGAGCTCCATCTCCTGGTCCTCGGGCGCCAGCGGGT
GGTCCAGACACACAAAGAGGTTTGTCTCGAGCGCGAGGTCGATGTCCAGCACCCCGACCACGTCC
TTGATCTCGGCCAAGTCCTTGGCGGTCACCGGGAGCAGCCCCTGGATGTCCAACGTCTTGATGGC
GATGTAGAGGTGCAGCACGATGTGCAGAAGGAACTTGGCCTGGTCGGCGGGCAGCTCGGTGGCGT
ACGGGAGCATCAGCAGGAGCCGGAGCGTGCGTGGGTGGTCCCGGGCGAAGAAGCGCGAGCTGGGG
TCTGTCTGGGCGTGCTCGAGCTCGGCGCGGTCCTGGGGGTAGTCCAAGTTGTAGAACGACTCGCG
GGTAACCTCGATGGTCGAGTACAGCGGGCGTCTGTTGAACAACGGCGGTTGCTGGGGCTCGCCGT
CGTCGGGCACTGCGGTGTGGGCGCCGTCTCGCGTCGGGGGGGCCG
Found at i:202933 original size:12 final size:13
Alignment explanation
Indices: 202904--202937 Score: 52
Period size: 12 Copynumber: 2.7 Consensus size: 13
202894 TTGGGTCTGT
202904 GGGTGGTCTGTGG
1 GGGTGGTCTGTGG
*
202917 CGGTGGT-TGTGG
1 GGGTGGTCTGTGG
202929 GGGTGGTCT
1 GGGTGGTCT
202938 TTGGTGGGCT
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
12 11 0.61
13 7 0.39
ACGTcount: A:0.00, C:0.09, G:0.59, T:0.32
Consensus pattern (13 bp):
GGGTGGTCTGTGG
Left flanking sequence: Indices 202404 -- 202903
AGGAGCCGGAGCGTGCGTGGGTGGTCCCGGGCGAAGAAGCGCGAGCTGGGGTCTGTCTGGGCGTG
CTCGAGCTCGGCGCGGTCCTGGGGGTAGTCCAAGTTGTAGAACGACTCGCGGGTAACCTCGATGG
TCGAGTACAGCGGGCGTCTGTTGAACAACGGCGGTTGCTGGGGCTCGCCGTCGTCGGGCACTGCG
GTGTGGGCGCCGTCTCGCGTCGGGGGGGCCGTCTGGAGGTCGGACAAGTGGGTGGCCAGCAGCAC
CCGGGGGATCTGCCGCGACAGCACGGGGCGTGGAGCCTTCAAACTCGGGCGGGAGTCATCTGGGG
GAGCCATTCGCCACGGGAGTCGGTTGCTGAGTGGCCGGTCTGGTGGGAAAAAATGCGTGTTTGCC
ACTGAGGGGAACGCGGCGTGGCGGGCGGTGGCGGGGCGGATCGGGGTGGGCGGGGTGTTGGTGGG
GTGTGGGTGGGTGGGTGAGGGTGGTTTTTGGGGCATTGGGTCTGT
Right flanking sequence: Indices 202938 -- 203437
TTGGTGGGCTCAGCGAAGAGATGGAAAAGAGCGATGGGAGGGAGATGGGAGGAGGAACGGAGATG
CGATGAGCATGGGGGAATTACGGTGGTGGGGGGTTGTGGGGGTTGTTTGGCTACGATGTGTGTGG
TGGGTGGGAATGGCCGGAATGGGTCGTGGTTCGGGCCCAATGGCTGTCTCGGGCGCGTTTGCCCC
ACAATTTCGAACGCGGGGACGGCAACCATGACGTAATGGCACAAGAACAGAAGTCGCACACGGAA
GAGGGGAAGGAGGCGGAGATGAGAGTGGGTAAGAGATGGTGGTGGGTGGTAGTGTGGGGTGTGGG
AAGTGGTGTGGGTGGTGGTGGTAGTAGTGGTGGTGGTATTAGTTGTGGTGTTGTCAAGGAAGACC
GATTGACTAGTTGATACACTGGCGTTTTTCTTATCTACTAACGAGTCGCTAGGCCGTGCTTTTGG
TGGCAAATCTCATAACCCCGCTGGATCTTGTGTTTGTCCGAATCT
Found at i:203292 original size:15 final size:15
Alignment explanation
Indices: 203274--203312 Score: 60
Period size: 15 Copynumber: 2.6 Consensus size: 15
203264 AGTGGTGTGG
203274 GTGGTGGTGGTAGTA
1 GTGGTGGTGGTAGTA
*
203289 GTGGTGGTGGTATTA
1 GTGGTGGTGGTAGTA
*
203304 GTTGTGGTG
1 GTGGTGGTG
203313 TTGTCAAGGA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.10, C:0.00, G:0.51, T:0.38
Consensus pattern (15 bp):
GTGGTGGTGGTAGTA
Left flanking sequence: Indices 202774 -- 203273
GGAAAAAATGCGTGTTTGCCACTGAGGGGAACGCGGCGTGGCGGGCGGTGGCGGGGCGGATCGGG
GTGGGCGGGGTGTTGGTGGGGTGTGGGTGGGTGGGTGAGGGTGGTTTTTGGGGCATTGGGTCTGT
GGGTGGTCTGTGGCGGTGGTTGTGGGGGTGGTCTTTGGTGGGCTCAGCGAAGAGATGGAAAAGAG
CGATGGGAGGGAGATGGGAGGAGGAACGGAGATGCGATGAGCATGGGGGAATTACGGTGGTGGGG
GGTTGTGGGGGTTGTTTGGCTACGATGTGTGTGGTGGGTGGGAATGGCCGGAATGGGTCGTGGTT
CGGGCCCAATGGCTGTCTCGGGCGCGTTTGCCCCACAATTTCGAACGCGGGGACGGCAACCATGA
CGTAATGGCACAAGAACAGAAGTCGCACACGGAAGAGGGGAAGGAGGCGGAGATGAGAGTGGGTA
AGAGATGGTGGTGGGTGGTAGTGTGGGGTGTGGGAAGTGGTGTGG
Right flanking sequence: Indices 203313 -- 203812
TTGTCAAGGAAGACCGATTGACTAGTTGATACACTGGCGTTTTTCTTATCTACTAACGAGTCGCT
AGGCCGTGCTTTTGGTGGCAAATCTCATAACCCCGCTGGATCTTGTGTTTGTCCGAATCTGTGAC
TAAATCGGGGCTGGGGCGGGCTTCCGTTTTTGGGAATGGGTCCGTTGCTACACGTGAGCAGCCCG
CGGTTGCCGGTTCTATATATAGCGGAGACACAATGTCGGTTGTCGTGTGTCGCTGAGGTGTCAAC
GTCGCTACAACGTTGTAGTGCGGTCACGTCGGGGCACGACCAGGCGAGTGACAGCTGGGAGAAGG
GACGTTTTCTGGTAGAACTGATTTGGGACATGGCACCGGACCAATGTGAAAGTAGTGGTTGCAGC
AAGCAGGGCTGTTACTGAAAGGTTGTTATTGTTAATGGGCACCGTATTTCTTGTAAGCTCGTCAA
ACATAGGACAATTAGACTAGTCATCTACTGTTTGTCTCATCCCAC
Found at i:203305 original size:18 final size:18
Alignment explanation
Indices: 203273--203312 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
203263 AAGTGGTGTG
*
203273 GGTGGTGGTGGTAGTAGT
1 GGTGGTGGTAGTAGTAGT
* *
203291 GGTGGTGGTATTAGTTGT
1 GGTGGTGGTAGTAGTAGT
203309 GGTG
1 GGTG
203313 TTGTCAAGGA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.10, C:0.00, G:0.53, T:0.38
Consensus pattern (18 bp):
GGTGGTGGTAGTAGTAGT
Left flanking sequence: Indices 202773 -- 203272
GGGAAAAAATGCGTGTTTGCCACTGAGGGGAACGCGGCGTGGCGGGCGGTGGCGGGGCGGATCGG
GGTGGGCGGGGTGTTGGTGGGGTGTGGGTGGGTGGGTGAGGGTGGTTTTTGGGGCATTGGGTCTG
TGGGTGGTCTGTGGCGGTGGTTGTGGGGGTGGTCTTTGGTGGGCTCAGCGAAGAGATGGAAAAGA
GCGATGGGAGGGAGATGGGAGGAGGAACGGAGATGCGATGAGCATGGGGGAATTACGGTGGTGGG
GGGTTGTGGGGGTTGTTTGGCTACGATGTGTGTGGTGGGTGGGAATGGCCGGAATGGGTCGTGGT
TCGGGCCCAATGGCTGTCTCGGGCGCGTTTGCCCCACAATTTCGAACGCGGGGACGGCAACCATG
ACGTAATGGCACAAGAACAGAAGTCGCACACGGAAGAGGGGAAGGAGGCGGAGATGAGAGTGGGT
AAGAGATGGTGGTGGGTGGTAGTGTGGGGTGTGGGAAGTGGTGTG
Right flanking sequence: Indices 203313 -- 203812
TTGTCAAGGAAGACCGATTGACTAGTTGATACACTGGCGTTTTTCTTATCTACTAACGAGTCGCT
AGGCCGTGCTTTTGGTGGCAAATCTCATAACCCCGCTGGATCTTGTGTTTGTCCGAATCTGTGAC
TAAATCGGGGCTGGGGCGGGCTTCCGTTTTTGGGAATGGGTCCGTTGCTACACGTGAGCAGCCCG
CGGTTGCCGGTTCTATATATAGCGGAGACACAATGTCGGTTGTCGTGTGTCGCTGAGGTGTCAAC
GTCGCTACAACGTTGTAGTGCGGTCACGTCGGGGCACGACCAGGCGAGTGACAGCTGGGAGAAGG
GACGTTTTCTGGTAGAACTGATTTGGGACATGGCACCGGACCAATGTGAAAGTAGTGGTTGCAGC
AAGCAGGGCTGTTACTGAAAGGTTGTTATTGTTAATGGGCACCGTATTTCTTGTAAGCTCGTCAA
ACATAGGACAATTAGACTAGTCATCTACTGTTTGTCTCATCCCAC
Found at i:204558 original size:12 final size:12
Alignment explanation
Indices: 204541--204566 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
204531 AATATATACA
204541 TATACGTACACG
1 TATACGTACACG
204553 TATACGTACACG
1 TATACGTACACG
204565 TA
1 TA
204567 GACCTATGTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.15, T:0.27
Consensus pattern (12 bp):
TATACGTACACG
Left flanking sequence: Indices 204041 -- 204540
GGTCACGCCACGAACCATCGTCCCGCCACCACCCTCCCATCGGCCCCGGTGGATCGAGATCGCCT
CCGCTGGAGCAACCGGGGTGCATACGCGCTGCGTCACCGCCAGCACCATTACCGGCCAGTGCATG
GGAGCCGCTGGAGGCCAAGGCTCGAGGCAGAGCCCGGCGTGCGCAGACACCACCTGAAACAGAGG
CGAAAGAACAGGTGTCTGGTAGGTCGAAACGGTGTTCTGTAGGGTTCAAACGGTTTCCGAGCAGT
GTCTAGACGTGTTCCTTCTGTCCTTTTGTGGCTGCGTGGTGCTTGCTTGTGGCCATTGTTCCGCC
GCCGTTGACGAGCTTGCTGTGCTGTTTCGCGTCAATCGGGTCCACTTTCCTGCCGTACCGACCAG
GCGACAAACTATTGCGCATACGTCTACTGTCTCACTCACTCATATACATGTATACATGTAAGTAA
GTATATGTATATACAGACGTACACACGTACACACGAATATATACA
Right flanking sequence: Indices 204567 -- 205066
GACCTATGTACGCGTACTTATTCACCTCTTTTACCCTCCCTTTTCTTTCATTTTCCCTTATCTCC
TTCCTTTCTCCATTTCTCTTTGTTCTCTCGTCTCTTCTTTCCTTCTTCCACCTCTACATCCTACC
ACCTCGTGTAGCCATGACCCACCACGCCTGCGCCACAAAGCAACCAGCGTGACTAAATCCACCCA
AACTACCTAAAACCACCCCAAACCCCCTTCTCCCCGCCCACCCGTCCACCACCCCACCCACGTCG
CCCTACCTGCCCTGCCTCCATTAGCCCATTCTTGTTCCCGTTCTTGGTAACTTTTTTCGTTGCGT
GCGATTTTTACGTCAACAACGCCTCTAGTCAGCCCTCCACCCTTGCCATGGACGACTTGCCCGTG
TACCCGACGCCCCAGCAGGCTGCGTACGGGGTCCAGCCTCCGAGTGCTGCGTCCCAGCAGGCGCG
CAAGAAGCCGTCCCAGCCCAAACAGCAGTACGCCCCCTACCAGCC
Found at i:205272 original size:18 final size:18
Alignment explanation
Indices: 205251--205289 Score: 69
Period size: 18 Copynumber: 2.2 Consensus size: 18
205241 CCAGTCCTAC
205251 CACCAGCCGCCACAACAG
1 CACCAGCCGCCACAACAG
*
205269 CACCAGCCGCCGCAACAG
1 CACCAGCCGCCACAACAG
205287 CAC
1 CAC
205290 GCCCAGCCGC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.31, C:0.51, G:0.18, T:0.00
Consensus pattern (18 bp):
CACCAGCCGCCACAACAG
Left flanking sequence: Indices 204751 -- 205250
AAATCCACCCAAACTACCTAAAACCACCCCAAACCCCCTTCTCCCCGCCCACCCGTCCACCACCC
CACCCACGTCGCCCTACCTGCCCTGCCTCCATTAGCCCATTCTTGTTCCCGTTCTTGGTAACTTT
TTTCGTTGCGTGCGATTTTTACGTCAACAACGCCTCTAGTCAGCCCTCCACCCTTGCCATGGACG
ACTTGCCCGTGTACCCGACGCCCCAGCAGGCTGCGTACGGGGTCCAGCCTCCGAGTGCTGCGTCC
CAGCAGGCGCGCAAGAAGCCGTCCCAGCCCAAACAGCAGTACGCCCCCTACCAGCCGTCTCCCCA
GGGCCTCCAGCACGGCTTCTCGTCGTCGCAGGGCCAGTACGACCGGTCCCACTACCAAAACGCCC
CCCAGCAGCAGTCGCGACCGCCTCCACAGACCCGTGCGCCGCCCCAGCAGCAGTACCAGCCCCAG
GGGTACCAGAACTACCCCACCCCGCCCTCCCAGAGCCAGTCCTAC
Right flanking sequence: Indices 205290 -- 205789
GCCCAGCCGCAGTACCAGGGGCCCCACACCCACTCGCACGGCGGGTACGACCAGTACCAGCCCCA
GCAGCCGCAGTACCAGCCGCAGCAGGCTCCCCCGGCCCAGTACCAGCAGTACGCCCCACAAACCG
CCCAGAACTCGGGCCAGTCGCACCACGCGCCGCCTCCCGCGCCGCAGGGCCACTCACAAGGCCAC
TCGCAGGGCCACCAGACCCACCCCCAGTACGCCAGCCGGCCCGACAACCAGTCGCCGGTTCCGGC
GAAAAAACTGCCGATTCCGCCGCTAAAGTCGGCGCCCACGCTGGAGCTGGTGCTGCTGAAGCTGC
TGCTGAAGGCCAAGCTCGACCAGGAGCTCCGGGCAGTGTTTGACAAGGTCGATGTCAACCGTCTG
GGGCGGATTCTGGCCAAGGAGCTCTCGCTGGCGCTCCTCAATTTCGACCGGTCGCCGTTCAACCC
CACGACGATCCACCTCATGATCCGGTTGTTTCTGACGCTGGCGGG
Found at i:205280 original size:21 final size:21
Alignment explanation
Indices: 205256--205299 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
205246 CCTACCACCA
*
205256 GCCGCCACAACA-GCACCAGCC
1 GCCGCAACAACACGC-CCAGCC
*
205277 GCCGCAACAGCACGCCCAGCC
1 GCCGCAACAACACGCCCAGCC
205298 GC
1 GC
205300 AGTACCAGGG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 18 0.90
22 2 0.10
ACGTcount: A:0.25, C:0.52, G:0.23, T:0.00
Consensus pattern (21 bp):
GCCGCAACAACACGCCCAGCC
Left flanking sequence: Indices 204756 -- 205255
CACCCAAACTACCTAAAACCACCCCAAACCCCCTTCTCCCCGCCCACCCGTCCACCACCCCACCC
ACGTCGCCCTACCTGCCCTGCCTCCATTAGCCCATTCTTGTTCCCGTTCTTGGTAACTTTTTTCG
TTGCGTGCGATTTTTACGTCAACAACGCCTCTAGTCAGCCCTCCACCCTTGCCATGGACGACTTG
CCCGTGTACCCGACGCCCCAGCAGGCTGCGTACGGGGTCCAGCCTCCGAGTGCTGCGTCCCAGCA
GGCGCGCAAGAAGCCGTCCCAGCCCAAACAGCAGTACGCCCCCTACCAGCCGTCTCCCCAGGGCC
TCCAGCACGGCTTCTCGTCGTCGCAGGGCCAGTACGACCGGTCCCACTACCAAAACGCCCCCCAG
CAGCAGTCGCGACCGCCTCCACAGACCCGTGCGCCGCCCCAGCAGCAGTACCAGCCCCAGGGGTA
CCAGAACTACCCCACCCCGCCCTCCCAGAGCCAGTCCTACCACCA
Right flanking sequence: Indices 205300 -- 205799
AGTACCAGGGGCCCCACACCCACTCGCACGGCGGGTACGACCAGTACCAGCCCCAGCAGCCGCAG
TACCAGCCGCAGCAGGCTCCCCCGGCCCAGTACCAGCAGTACGCCCCACAAACCGCCCAGAACTC
GGGCCAGTCGCACCACGCGCCGCCTCCCGCGCCGCAGGGCCACTCACAAGGCCACTCGCAGGGCC
ACCAGACCCACCCCCAGTACGCCAGCCGGCCCGACAACCAGTCGCCGGTTCCGGCGAAAAAACTG
CCGATTCCGCCGCTAAAGTCGGCGCCCACGCTGGAGCTGGTGCTGCTGAAGCTGCTGCTGAAGGC
CAAGCTCGACCAGGAGCTCCGGGCAGTGTTTGACAAGGTCGATGTCAACCGTCTGGGGCGGATTC
TGGCCAAGGAGCTCTCGCTGGCGCTCCTCAATTTCGACCGGTCGCCGTTCAACCCCACGACGATC
CACCTCATGATCCGGTTGTTTCTGACGCTGGCGGGCGGTGGAGCC
Found at i:206347 original size:24 final size:23
Alignment explanation
Indices: 206311--206357 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 23
206301 TGAGGTGTCG
206311 ATGGTGTATGATTGTATGGTTGT
1 ATGGTGTATGATTGTATGGTTGT
* *
206334 ATGGTCGTGTGATTGTGTGGTTGT
1 ATGGT-GTATGATTGTATGGTTGT
206358 TTCTGGCACC
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
23 5 0.24
24 16 0.76
ACGTcount: A:0.13, C:0.02, G:0.38, T:0.47
Consensus pattern (23 bp):
ATGGTGTATGATTGTATGGTTGT
Left flanking sequence: Indices 205811 -- 206310
CCAGCTGCTCAACTTCGAGCAGTTTGTGCTGTTGTGGAAGTACCTCCTGGCGTACAAAAAGCTCT
TTATCCAGGCGGACCAGAACCGGCTGGGCGACATCAGTTTTGGCGAGTTCCAGAAGATCTTGGAG
CAGATCGGGTACAAGCTCAACACCGACCTCGTGCTCCACTTGTTTGCCAAGTTTTCCAGCAAGAA
CCTGAACGACCCGTACCTGACGTCGGTGGGCAAGCTCAAGTTTGACGGGTTCATCGAGCTCCTAG
TGTACTTGCGCAAGTTGACCGACGTGTTCAAGAAGTACGACAAGGACTTCAAGGGGGTGGCCACC
ATCAACTTTAGCGACTTTTTGTTTGAGGTGAGCAACCTCCAGTAACTGTAATATATGGGTATAGA
CGGATATACGTGAAGGCAAGGTACGTGTAAGTATGGGATTTTTGTAAAAGTGTGAGAAAATTGGT
AGGTATGTGAGAGAAATATGTGATAGTGTTGAAGTTGAGGTGTCG
Right flanking sequence: Indices 206358 -- 206857
TTCTGGCACCTGTGCGGGTAGTGGTTTTGGTATGGGACATGTTTTGAAACAACACTGAATTTATT
GTATTAGATGGTTTACTCGGGGTCGTTATCTACGATACGACTGTTTGTTAACCATGCTTTTTCCT
GTTGGCTTCTTTGGCTTCTCTTGGCTTCTCTTGGCTCCCTTTTTCACTCATGCCTTTGGTACGTG
ACATCGAGAATGCCAAGGAATCGGGTGAAAAGTGGGGAACCTACTAGCTGTGTTTTCTACTTCAC
TTTCTTCCTTGCGTCACCTCTTTCAAAACCCCTTACCGTTTTCTTAGTGCTCGTGGTTATACTCA
AATCACCCGATCTGAAACAATTTTTCACCCCGAACAGACCACACGGAGAAAACACGAAACGACCA
CCCGGAAGAGACTTCAAATGGTCAGGACACCGTTATGGCATATGGTCTGACCAATGACGCCCTTC
GTGGCATACATTCACGACCATCCGGTCCGCTCTTAATTTACTGTT
Found at i:206513 original size:10 final size:10
Alignment explanation
Indices: 206489--206523 Score: 63
Period size: 10 Copynumber: 3.6 Consensus size: 10
206479 CTTTTTCCTG
206489 TTGGCTTCT-
1 TTGGCTTCTC
206498 TTGGCTTCTC
1 TTGGCTTCTC
206508 TTGGCTTCTC
1 TTGGCTTCTC
206518 TTGGCT
1 TTGGCT
206524 CCCTTTTTCA
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
9 9 0.36
10 16 0.64
ACGTcount: A:0.00, C:0.26, G:0.23, T:0.51
Consensus pattern (10 bp):
TTGGCTTCTC
Left flanking sequence: Indices 205989 -- 206488
AAGTTTTCCAGCAAGAACCTGAACGACCCGTACCTGACGTCGGTGGGCAAGCTCAAGTTTGACGG
GTTCATCGAGCTCCTAGTGTACTTGCGCAAGTTGACCGACGTGTTCAAGAAGTACGACAAGGACT
TCAAGGGGGTGGCCACCATCAACTTTAGCGACTTTTTGTTTGAGGTGAGCAACCTCCAGTAACTG
TAATATATGGGTATAGACGGATATACGTGAAGGCAAGGTACGTGTAAGTATGGGATTTTTGTAAA
AGTGTGAGAAAATTGGTAGGTATGTGAGAGAAATATGTGATAGTGTTGAAGTTGAGGTGTCGATG
GTGTATGATTGTATGGTTGTATGGTCGTGTGATTGTGTGGTTGTTTCTGGCACCTGTGCGGGTAG
TGGTTTTGGTATGGGACATGTTTTGAAACAACACTGAATTTATTGTATTAGATGGTTTACTCGGG
GTCGTTATCTACGATACGACTGTTTGTTAACCATGCTTTTTCCTG
Right flanking sequence: Indices 206524 -- 207023
CCCTTTTTCACTCATGCCTTTGGTACGTGACATCGAGAATGCCAAGGAATCGGGTGAAAAGTGGG
GAACCTACTAGCTGTGTTTTCTACTTCACTTTCTTCCTTGCGTCACCTCTTTCAAAACCCCTTAC
CGTTTTCTTAGTGCTCGTGGTTATACTCAAATCACCCGATCTGAAACAATTTTTCACCCCGAACA
GACCACACGGAGAAAACACGAAACGACCACCCGGAAGAGACTTCAAATGGTCAGGACACCGTTAT
GGCATATGGTCTGACCAATGACGCCCTTCGTGGCATACATTCACGACCATCCGGTCCGCTCTTAA
TTTACTGTTTATTGTCTGGGTTTCCCCCTCGACCCACTTAATATACACTTTTATTAGACAACTCT
ATTACAACACGCTTAGTCTCTGGCACGGCGTCTGTACTGGGGCTCACCACCTCTTCTGGGGCCTC
TCTGCATACGGTTGGGTCTCTCAGCGGGGGCGTTCTTGAGACGGG
Found at i:210002 original size:17 final size:15
Alignment explanation
Indices: 209960--210004 Score: 81
Period size: 15 Copynumber: 3.0 Consensus size: 15
209950 TCTACAGGCA
209960 TCACTCCCACACACT
1 TCACTCCCACACACT
209975 TCACTCCCACACACT
1 TCACTCCCACACACT
*
209990 TCGCTCCCACACACT
1 TCACTCCCACACACT
210005 AGCTTCCACA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
15 29 1.00
ACGTcount: A:0.24, C:0.53, G:0.02, T:0.20
Consensus pattern (15 bp):
TCACTCCCACACACT
Left flanking sequence: Indices 209460 -- 209959
AGTCATCGCTCTACCATCACCGGTGAGACCACTACTCCCCACCGTTTGACTTCCCTTTCCCACGC
TTTCTCCGGTGTCTGCCTAAGCGTTTCACGTGAACTCTGAGCCCATTTCAGGGCCATTGAGGTAT
ACCAATGGCCCCATAACGGTTTCACCTGCCCGGGCATGATATTTGTTCACCCACAACACCCAGAG
AACCGGCTGAGCCAACGCACGCCACACATGTCGTCATTCTGCAAGATATGCCAACATGGCGGCCT
CCAGCGATCTTAGTCAGCGAGGCTATCAACCAAGAGCCACCAAAGTTTCAAACCACTGACTGCCA
CTCCACCACAGCTACCAGCATCCATCCACGACCACCAGCTACCCTTATCACGCCACGGTTCCTGG
CGTTCCCACCGCACGTGAACACTCTCACTGGGCTCCTGGCCTGCTAGCCTACGGTAGCGAGCTCT
TCGCGGTGTCGGCTACACGTTTCCCCAGCCATGCTTCTACAGGCA
Right flanking sequence: Indices 210005 -- 210504
AGCTTCCACACGTTCTCTGAGAAACCAATTTCGCCCATCTCCACGGTCAACTAGTCAAACCTTAC
GAACTTGGTTATCCCAAGAAATGACAAAAAGCCCGGTCGAACTGGTTATACCCACCGCCCAGACC
CGCACTATTGGCCTACCACACGTTCTCGCACCTGTTCCCACCCTACACTCGCACCTGTTCCCTTC
CTACTCGCACCTGTACCCACTCCACGTTCGCAATATTCCCACCCACACCTGTTCCCACCCACCAC
TCACACCTGTTCCCACTCACCACTCACACTTGTTCCCACCTACTCGTTCCCACCCACTTGTTCCA
CCCACTTGTTCCAACCTACACCCACCTGTCTTTTCGCTCTTTCATTCATTAACGCACGTCGTGCC
GGCTGTTCCCAGCCCCTCTATGTATACATCGTCTAGTGGAGCAAGATCTCCTTGGCAAGCTCGTA
GGCAGTCCACGAGATCGCAGTGGCGGGGATGTTGAAGATAATCCG
Found at i:210015 original size:14 final size:15
Alignment explanation
Indices: 209963--210015 Score: 65
Period size: 15 Copynumber: 3.6 Consensus size: 15
209953 ACAGGCATCA
209963 CTCCCACACACTTCA-
1 CTCCCACACACTT-AG
*
209978 CTCCCACACACTTCG
1 CTCCCACACACTTAG
209993 CTCCCACACAC-TAG
1 CTCCCACACACTTAG
*
210007 CTTCCACAC
1 CTCCCACAC
210016 GTTCTCTGAG
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
14 10 0.29
15 24 0.71
ACGTcount: A:0.25, C:0.53, G:0.04, T:0.19
Consensus pattern (15 bp):
CTCCCACACACTTAG
Left flanking sequence: Indices 209463 -- 209962
CATCGCTCTACCATCACCGGTGAGACCACTACTCCCCACCGTTTGACTTCCCTTTCCCACGCTTT
CTCCGGTGTCTGCCTAAGCGTTTCACGTGAACTCTGAGCCCATTTCAGGGCCATTGAGGTATACC
AATGGCCCCATAACGGTTTCACCTGCCCGGGCATGATATTTGTTCACCCACAACACCCAGAGAAC
CGGCTGAGCCAACGCACGCCACACATGTCGTCATTCTGCAAGATATGCCAACATGGCGGCCTCCA
GCGATCTTAGTCAGCGAGGCTATCAACCAAGAGCCACCAAAGTTTCAAACCACTGACTGCCACTC
CACCACAGCTACCAGCATCCATCCACGACCACCAGCTACCCTTATCACGCCACGGTTCCTGGCGT
TCCCACCGCACGTGAACACTCTCACTGGGCTCCTGGCCTGCTAGCCTACGGTAGCGAGCTCTTCG
CGGTGTCGGCTACACGTTTCCCCAGCCATGCTTCTACAGGCATCA
Right flanking sequence: Indices 210016 -- 210515
GTTCTCTGAGAAACCAATTTCGCCCATCTCCACGGTCAACTAGTCAAACCTTACGAACTTGGTTA
TCCCAAGAAATGACAAAAAGCCCGGTCGAACTGGTTATACCCACCGCCCAGACCCGCACTATTGG
CCTACCACACGTTCTCGCACCTGTTCCCACCCTACACTCGCACCTGTTCCCTTCCTACTCGCACC
TGTACCCACTCCACGTTCGCAATATTCCCACCCACACCTGTTCCCACCCACCACTCACACCTGTT
CCCACTCACCACTCACACTTGTTCCCACCTACTCGTTCCCACCCACTTGTTCCACCCACTTGTTC
CAACCTACACCCACCTGTCTTTTCGCTCTTTCATTCATTAACGCACGTCGTGCCGGCTGTTCCCA
GCCCCTCTATGTATACATCGTCTAGTGGAGCAAGATCTCCTTGGCAAGCTCGTAGGCAGTCCACG
AGATCGCAGTGGCGGGGATGTTGAAGATAATCCGCGGCTTCAACC
Found at i:210186 original size:23 final size:21
Alignment explanation
Indices: 210159--210310 Score: 77
Period size: 23 Copynumber: 7.2 Consensus size: 21
210149 ACCACACGTT
210159 CTCGCACCTGTTCCCACCCTACA
1 CTCGCACCTGTTCCCACCCT--A
**
210182 CTCGCACCTGTTCCCTTCCTA
1 CTCGCACCTGTTCCCACCCTA
*
210203 CTCGCACCTGTACCCACTCC-A
1 CTCGCACCTGTTCCCAC-CCTA
* *
210224 CGTTCGCA-ATATTCCCACCC-A
1 C--TCGCACCTGTTCCCACCCTA
*
210245 ----CACCTGTTCCCACCCACCA
1 CTCGCACCTGTTCCCA-CC-CTA
* *
210264 CTCACACCTGTTCCCACTCACCA
1 CTCGCACCTGTTCCCAC-C-CTA
* *
210287 CTCACACTTGTTCCCA-CCTA
1 CTCGCACCTGTTCCCACCCTA
210307 CTCG
1 CTCG
210311 TTCCCACCCA
Statistics
Matches: 104, Mismatches: 13, Indels: 27
0.72 0.09 0.19
Matches are distributed among these distances:
15 2 0.02
16 7 0.07
17 2 0.02
18 1 0.01
19 1 0.01
20 5 0.05
21 21 0.20
22 10 0.10
23 55 0.53
ACGTcount: A:0.18, C:0.50, G:0.08, T:0.24
Consensus pattern (21 bp):
CTCGCACCTGTTCCCACCCTA
Left flanking sequence: Indices 209659 -- 210158
GGCTGAGCCAACGCACGCCACACATGTCGTCATTCTGCAAGATATGCCAACATGGCGGCCTCCAG
CGATCTTAGTCAGCGAGGCTATCAACCAAGAGCCACCAAAGTTTCAAACCACTGACTGCCACTCC
ACCACAGCTACCAGCATCCATCCACGACCACCAGCTACCCTTATCACGCCACGGTTCCTGGCGTT
CCCACCGCACGTGAACACTCTCACTGGGCTCCTGGCCTGCTAGCCTACGGTAGCGAGCTCTTCGC
GGTGTCGGCTACACGTTTCCCCAGCCATGCTTCTACAGGCATCACTCCCACACACTTCACTCCCA
CACACTTCGCTCCCACACACTAGCTTCCACACGTTCTCTGAGAAACCAATTTCGCCCATCTCCAC
GGTCAACTAGTCAAACCTTACGAACTTGGTTATCCCAAGAAATGACAAAAAGCCCGGTCGAACTG
GTTATACCCACCGCCCAGACCCGCACTATTGGCCTACCACACGTT
Right flanking sequence: Indices 210311 -- 210810
TTCCCACCCACTTGTTCCACCCACTTGTTCCAACCTACACCCACCTGTCTTTTCGCTCTTTCATT
CATTAACGCACGTCGTGCCGGCTGTTCCCAGCCCCTCTATGTATACATCGTCTAGTGGAGCAAGA
TCTCCTTGGCAAGCTCGTAGGCAGTCCACGAGATCGCAGTGGCGGGGATGTTGAAGATAATCCGC
GGCTTCAACCCCTTGAAAAACCCGGCCATCCCGGCCTCGTGGTACAACGCACGGGTGCCCAGCCA
GAACCCCAGGGCATTGCGCACCATGTCGTTTTCCGCCATCCCCTTGGTTTGTAAAAGGGTCTTGA
CACAATCAAGCGGGTTGGTCAACGCCGCGGCAATACCACCAGCGACACCACCGGCCACACAGTGG
GCCCACGGCGAGTACACGCCGGTGGGGTTGACGAGCTGCGACGTGTACTCGTAGAAGCCAAAGTT
GAGCGACGAGAACGGGATGTTGGTCATGAGCGTCGTCGGGTACGA
Found at i:210207 original size:21 final size:22
Alignment explanation
Indices: 210159--210219 Score: 79
Period size: 23 Copynumber: 2.8 Consensus size: 22
210149 ACCACACGTT
210159 CTCGCACCTGTTCCCACCCTACA
1 CTCGCACCTGTTCCCACCCTA-A
**
210182 CTCGCACCTGTTCCCTTCCT-A
1 CTCGCACCTGTTCCCACCCTAA
*
210203 CTCGCACCTGTACCCAC
1 CTCGCACCTGTTCCCAC
210220 TCCACGTTCG
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
21 15 0.45
23 18 0.55
ACGTcount: A:0.15, C:0.51, G:0.10, T:0.25
Consensus pattern (22 bp):
CTCGCACCTGTTCCCACCCTAA
Left flanking sequence: Indices 209659 -- 210158
GGCTGAGCCAACGCACGCCACACATGTCGTCATTCTGCAAGATATGCCAACATGGCGGCCTCCAG
CGATCTTAGTCAGCGAGGCTATCAACCAAGAGCCACCAAAGTTTCAAACCACTGACTGCCACTCC
ACCACAGCTACCAGCATCCATCCACGACCACCAGCTACCCTTATCACGCCACGGTTCCTGGCGTT
CCCACCGCACGTGAACACTCTCACTGGGCTCCTGGCCTGCTAGCCTACGGTAGCGAGCTCTTCGC
GGTGTCGGCTACACGTTTCCCCAGCCATGCTTCTACAGGCATCACTCCCACACACTTCACTCCCA
CACACTTCGCTCCCACACACTAGCTTCCACACGTTCTCTGAGAAACCAATTTCGCCCATCTCCAC
GGTCAACTAGTCAAACCTTACGAACTTGGTTATCCCAAGAAATGACAAAAAGCCCGGTCGAACTG
GTTATACCCACCGCCCAGACCCGCACTATTGGCCTACCACACGTT
Right flanking sequence: Indices 210220 -- 210719
TCCACGTTCGCAATATTCCCACCCACACCTGTTCCCACCCACCACTCACACCTGTTCCCACTCAC
CACTCACACTTGTTCCCACCTACTCGTTCCCACCCACTTGTTCCACCCACTTGTTCCAACCTACA
CCCACCTGTCTTTTCGCTCTTTCATTCATTAACGCACGTCGTGCCGGCTGTTCCCAGCCCCTCTA
TGTATACATCGTCTAGTGGAGCAAGATCTCCTTGGCAAGCTCGTAGGCAGTCCACGAGATCGCAG
TGGCGGGGATGTTGAAGATAATCCGCGGCTTCAACCCCTTGAAAAACCCGGCCATCCCGGCCTCG
TGGTACAACGCACGGGTGCCCAGCCAGAACCCCAGGGCATTGCGCACCATGTCGTTTTCCGCCAT
CCCCTTGGTTTGTAAAAGGGTCTTGACACAATCAAGCGGGTTGGTCAACGCCGCGGCAATACCAC
CAGCGACACCACCGGCCACACAGTGGGCCCACGGCGAGTACACGC
Found at i:210342 original size:13 final size:14
Alignment explanation
Indices: 210291--210341 Score: 77
Period size: 14 Copynumber: 3.7 Consensus size: 14
210281 TCACCACTCA
210291 CACTTGTTCCCACC
1 CACTTGTTCCCACC
* *
210305 TACTCGTTCCCACC
1 CACTTGTTCCCACC
210319 CACTTGTT-CCACC
1 CACTTGTTCCCACC
210332 CACTTGTTCC
1 CACTTGTTCC
210342 AACCTACACC
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
13 13 0.41
14 19 0.59
ACGTcount: A:0.14, C:0.47, G:0.08, T:0.31
Consensus pattern (14 bp):
CACTTGTTCCCACC
Left flanking sequence: Indices 209791 -- 210290
CACAGCTACCAGCATCCATCCACGACCACCAGCTACCCTTATCACGCCACGGTTCCTGGCGTTCC
CACCGCACGTGAACACTCTCACTGGGCTCCTGGCCTGCTAGCCTACGGTAGCGAGCTCTTCGCGG
TGTCGGCTACACGTTTCCCCAGCCATGCTTCTACAGGCATCACTCCCACACACTTCACTCCCACA
CACTTCGCTCCCACACACTAGCTTCCACACGTTCTCTGAGAAACCAATTTCGCCCATCTCCACGG
TCAACTAGTCAAACCTTACGAACTTGGTTATCCCAAGAAATGACAAAAAGCCCGGTCGAACTGGT
TATACCCACCGCCCAGACCCGCACTATTGGCCTACCACACGTTCTCGCACCTGTTCCCACCCTAC
ACTCGCACCTGTTCCCTTCCTACTCGCACCTGTACCCACTCCACGTTCGCAATATTCCCACCCAC
ACCTGTTCCCACCCACCACTCACACCTGTTCCCACTCACCACTCA
Right flanking sequence: Indices 210342 -- 210841
AACCTACACCCACCTGTCTTTTCGCTCTTTCATTCATTAACGCACGTCGTGCCGGCTGTTCCCAG
CCCCTCTATGTATACATCGTCTAGTGGAGCAAGATCTCCTTGGCAAGCTCGTAGGCAGTCCACGA
GATCGCAGTGGCGGGGATGTTGAAGATAATCCGCGGCTTCAACCCCTTGAAAAACCCGGCCATCC
CGGCCTCGTGGTACAACGCACGGGTGCCCAGCCAGAACCCCAGGGCATTGCGCACCATGTCGTTT
TCCGCCATCCCCTTGGTTTGTAAAAGGGTCTTGACACAATCAAGCGGGTTGGTCAACGCCGCGGC
AATACCACCAGCGACACCACCGGCCACACAGTGGGCCCACGGCGAGTACACGCCGGTGGGGTTGA
CGAGCTGCGACGTGTACTCGTAGAAGCCAAAGTTGAGCGACGAGAACGGGATGTTGGTCATGAGC
GTCGTCGGGTACGAGATGTAGAACGCCCCCAACCCCTCCTTTTTG
Found at i:212710 original size:11 final size:12
Alignment explanation
Indices: 212680--212712 Score: 50
Period size: 11 Copynumber: 2.8 Consensus size: 12
212670 AGAATGCACC
212680 TATTGAGGGACT
1 TATTGAGGGACT
212692 TATTGAGGG-CT
1 TATTGAGGGACT
*
212703 TCTTGAGGGA
1 TATTGAGGGA
212713 TATATGGCCC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
11 10 0.53
12 9 0.47
ACGTcount: A:0.21, C:0.09, G:0.36, T:0.33
Consensus pattern (12 bp):
TATTGAGGGACT
Left flanking sequence: Indices 212180 -- 212679
TGCGCTCACGACCGGGCTTAGGTGGCTCCTGGCCACGCCGTAAACGGCCACCACCCCGCGATTTT
TCCGGTACCGCGATTATTCAGCGCGCTAGTCAACGTTCGACGCCGCGCTCGCAACCGGGTGACGT
GCGGGGATAGCGCGGAGATAACCAAACGAATAGAGAGCTTTACCAGGTCGGAGAAGGCAGGCGCT
GGAGTGGTGTGGTGGGGAAGCGGGGGAAACGCGGAGGTAACACGGGAGCGGGTGTCCGAGTCGGT
CTTGGGGTTTAGGTTATATATACGGTAGATGTGGGTGGCAGGGCCATGTTCGACTGGATGATGAG
ACTTGTGGAGACGGTTGATCCGCTGATCAACGTGAGCGACTTCTGCTTGCTTAGCGACTACACGT
CGGAGTACGCGGTGCGCGAGCTGGCTCCGCGGGGGGCGGTAAGAGAAGCGAAGGAGTCCGGGCGG
TGGAAAGACAGCTCCGATGAAGAGACGCTAGTGGAAGAATGCACC
Right flanking sequence: Indices 212713 -- 213212
TATATGGCCCTGGAAGTTACTTGTTTGATACTGCTGGTGAGACGGAGTGGACTAGTTGCGCGGGA
ACGGTGCTACCACCTGATGTGAGCTAGCTCCGTGACGTGCCTCCATCACCCCGTGCTACTGAGAC
TAATGCCCCAAAGCCAAAGGGGCTTGGAAATGACGGAAAATAAACCATCAACAATCGGGAGTGTA
CGGGGCCCCGACAGTAGTCGATAGAAGATTAAAAGCGGCTTAAAGCTCAGGGCTGAGCGCCACAC
CATCTATATAAACAATCCACTTTGATCCCGGCCAATTGAGGTCAAAGGGAACTTTGGCCTTTGAT
CCTACTGATCCCATAGTACCATTGAACCATGGAAGCAGTTGATCCGTGGAAGCAGTTGAACCTTT
GGACCTGCTCAACACTTAGTACCATGGAACCCATTGAGCCTACTTCAAGTATAGAAGCCATGCGC
ACGTTACCATCGAACCATTGGACCAATGAGCCCGTTGACCACATA
Found at i:215790 original size:21 final size:21
Alignment explanation
Indices: 215746--215787 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
215736 TCATCCTTTT
*
215746 CACCCTCCTTTTCTTCCCTTC
1 CACCCTCCTTTCCTTCCCTTC
215767 CACCCTCCTTTCCTT-CCTTC
1 CACCCTCCTTTCCTTCCCTTC
215787 C
1 C
215788 CACTCTCTTC
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
20 6 0.30
21 14 0.70
ACGTcount: A:0.05, C:0.55, G:0.00, T:0.40
Consensus pattern (21 bp):
CACCCTCCTTTCCTTCCCTTC
Left flanking sequence: Indices 215246 -- 215745
CGGACAACACCAAACCGAAACGTGGGTTTGGTGTGTGAGGTGGTAGGTGGTGGAATGGATGGTGG
CGAATGGTTACACCGCGAGACTCGGCTAAACCCTGGTTGGTGTATTGAACTTGTAGTGGACACAT
TAATCCGGTGAACTCTAGCATGCGCCCTGGCTATGACCGATGAGTCGATCCATGACGTATGGACC
TATGCTTGGCTCTACGTAGCACTACTCTTCTCTACATTTGACCCTCTCGGTTATACGCGATCACG
AGCATCTACTCATCGCCTAGCCAACCACGGCCGAGGCGATAGTAATCAGCAGGGCTGAAGGAAGG
AAGCACACACGAGTGATCCGCATGCATAGCTTCCACCCAACTACCGTATGTTTGCCATTCGGTAA
CCACTGGCTGATCCGGAGTTACCGATAACCCCACGAGTTTGCCCCGGCCATCTCAAGCTTCAAAA
TCTGTGAGTAGACACCGTTCATTTTTATGATTTAATCATCCTTTT
Right flanking sequence: Indices 215788 -- 216287
CACTCTCTTCACATTCCTCACTACACACATTCCCGCCATTTCAACTTTATTTACCCGGCTGCATC
AGGTTGCTCGAGCGCAAGTCCCGTCTCCCCCCACGCCCCGTACACACAGGCAAATCAATTAAGCC
ACACAGCACCACACCTACCCTCATCAACACTCTCATCCCCAGCCCTATTCGCATTCTCCTCTCCA
GCCTTTGTTCTTCTCTTCCGTGCTATGACATCACAGGGGCATCGCAATCCCACCCACGACAACCA
CCGGGTACCGCGCTCCCCGCGGCGAAATCGCGCAAAACTGCGCCACCAACACGCCCAAACCACCC
CGTTTACCCTACTAGCCACCCCCATAACCCCCCACCCCCACCCTTTTCGATTGCCTTCTTCTCCC
TTCCCTCGCTCACTCCCTCCTGCACAACCTATAAAACATTTTTCACTTTCAGGTACTCCATCACC
ATGTCTGTATCCGCTTCCAAGGCTAAAAGAGAGCAGAAACGGCTT
Found at i:218456 original size:11 final size:11
Alignment explanation
Indices: 218440--218470 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
218430 ATAAACTAGG
218440 GGGTTTGTAAA
1 GGGTTTGTAAA
*
218451 GGGTTTGTAAC
1 GGGTTTGTAAA
218462 GGGTTTGTA
1 GGGTTTGTA
218471 GCCTCTTTAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.19, C:0.03, G:0.39, T:0.39
Consensus pattern (11 bp):
GGGTTTGTAAA
Left flanking sequence: Indices 217940 -- 218439
TGTGTCGCACGACTTCCGTTTGTTGGACAAGGTGGCCAAGGACATTTTCGTCATCGAGGACAAGA
ATGCTACCCGGTGGGAGGGGTCTATTCTCGACTACAAGAAGAAGTTGGCCCAGGGTGTGGTTTTG
TAAGAATAAATGAGAACCAGGTAAGGAACAAGTAGACGGGCACTTGCCCTTGTGTAGGTTTTGAG
GTTTTGAAAGGTAGCATCCAGATGATTTGGAAACCGGAATCTGAGTGTTGAAAAGTTTTAAAGTG
ACGACGGATGGGCCCTTTTTGTAGAAGAAAAGCGGGAGTCGTGACCTCGAAAAGTCTTGGCCTGT
ACCTACTGTACATATACGCCTTCGAGCACTGTTTTGGTCGTTTCACCACTCAGGTCGGTGGAGAC
CTGTATTTTTAACATTTCGCACGACTGGGTGGTTGGAGTCCCACCGGGGTAGCTGAAATGGGAAG
CAAACGGTGTTTTGTAAACAAGGTGTGGTCAGGCGATAAACTAGG
Right flanking sequence: Indices 218471 -- 218970
GCCTCTTTAAAGTATCATTAAGTTCCCTACATCGACGATCATGGGGTATTTGAGCGATCTCAGAG
CAGAGTGGTCTGAAGTTCTCCAACAAGTGTTTGCTAGGGGAGCAGAACAGAACCGGTGCCCGGAA
ACAGGTAGATCAGACTGCACTTGCTACCGAGAAGCCTGTCCCATTAGCGAAATACCAAGTGGTGA
ACTAGCGAGATCTATGATGGCCGACGCCGAGCAATTGGAGACCATGATCCGGGGAAAAGACCAAG
AGATTGCGTCAAAGTACCGCGAGAAGGATCGTGTACAGTTGTGTGTCTCCAGCAAGCTCCAAGAG
TTTAGCTTTCTTAGCAAGAAGCACACCGAGCTTCTTACTAAGAGAGAAAAATTGGATGTAGAATT
AAAGAGTATCGACAGGAAGCTCATGGCAGAAAAGAAAGCCCATGATGGGGTGCAAGCAAGGTTTG
AACGCGACAAAGCACGGTGGCAAACCGAGATCAAGCATTTAAAGC
Found at i:228106 original size:16 final size:16
Alignment explanation
Indices: 228085--228165 Score: 135
Period size: 16 Copynumber: 5.1 Consensus size: 16
228075 GGAGACGAAG
228085 GAGGATGAACGGAGGA
1 GAGGATGAACGGAGGA
228101 GAGGATGAACGGAGGA
1 GAGGATGAACGGAGGA
*
228117 GAGGATGAAAGGAGGA
1 GAGGATGAACGGAGGA
*
228133 GAGGAAGAACGGAGGA
1 GAGGATGAACGGAGGA
*
228149 GAGGACGAACGGAGGA
1 GAGGATGAACGGAGGA
228165 G
1 G
228166 GAGCTTTTTA
Statistics
Matches: 61, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 61 1.00
ACGTcount: A:0.40, C:0.06, G:0.51, T:0.04
Consensus pattern (16 bp):
GAGGATGAACGGAGGA
Left flanking sequence: Indices 227585 -- 228084
TGGTTGTTGCGCAAGTAGTCGCGGTTGTTCTTGACCGTCTTGAACGACGTGCGGCCCAACCGGTG
GATCTTGAGGGCCTTGGCGGTGCCGTGGTTGTCAGACACTTGGTAGATGTCCAGCTCCTTGCCTA
CCCCGATCAGGTTGCCCACCGAGTACACCAGGTCGCGGTTGAGCAACAGTTTGAGGGCCAAGTAG
TCGTAGCCCGCGTAGGTGAGGCGGAACCCGTCGTACTTGGCGTTCCGCAACCGCGACACGAGGTT
GAGCTTGGCCAAGTCTCCGATGGCCCGGTTGGTGGCGGAGGGGGCACGCATCCCGCCCTCCTTGT
GGATCATGTGGGTGGGCACCAACTCGTGGGAGCGGGCCCCGATCTCCACGCCCTGGAGGACCTTC
CAGTCGTCCGCGGTGAGGTACCGCATGTGGGAGGTGTCGAACTTCATTGTCGTGGAGGTTCCGTT
GATAGCCGCGATGAGCTGCGAAAAACGAGATGGGAGGAGACGAAG
Right flanking sequence: Indices 228166 -- 228665
GAGCTTTTTAGGAGAGGAGGTAATTTTACAAGTGACGTATTGCGGGACATGGCCAACCTGCCAGA
GTCAAATCTACGGTGTCAATCTACGGTCTCAAAATCAACGGTGAAGATCAATATGGTTACATTAA
ACTGCCCATAATGACCAATACTATACGGCTATACGATCAAGTACCAAGGCCATTGTCCCTAGGCC
ATTGTCCCTAGGCCGTTACCCCTCTTGTACCAAGACCATTGCCTCTACATTTCTCTCGTTTTATA
ACTTTTGTTTCACTATATTAAAAACCTACCCAAATGTGACAAAACCGGTACAAATCAAATAAAAC
CCAAAACCCTTTCTATAAGCATGCCTTTTCTTATCCCAAAAATCCAAATAACTTTTAATTGCCTC
AACAATCATGGTTTCAAAAGAAAAAGCCAGTCGAAAAGGTGTCGGAAACCGATGGTTTTCCCCCC
ACTCGAGCAAAATCAATCATGCAGTGTGGCTTACCACCACAGCCC
Found at i:228137 original size:8 final size:8
Alignment explanation
Indices: 228095--228153 Score: 50
Period size: 8 Copynumber: 7.4 Consensus size: 8
228085 GAGGATGAAC
228095 GGAGGAGA
1 GGAGGAGA
*
228103 GGATGA-A
1 GGAGGAGA
228110 CGGAGGAGA
1 -GGAGGAGA
* *
228119 GGATGAAA
1 GGAGGAGA
228127 GGAGGAGA
1 GGAGGAGA
*
228135 GGAAGA-A
1 GGAGGAGA
228142 CGGAGGAGA
1 -GGAGGAGA
228151 GGA
1 GGA
228154 CGAACGGAGG
Statistics
Matches: 39, Mismatches: 8, Indels: 8
0.71 0.15 0.15
Matches are distributed among these distances:
7 2 0.05
8 35 0.90
9 2 0.05
ACGTcount: A:0.41, C:0.03, G:0.53, T:0.03
Consensus pattern (8 bp):
GGAGGAGA
Left flanking sequence: Indices 227595 -- 228094
GCAAGTAGTCGCGGTTGTTCTTGACCGTCTTGAACGACGTGCGGCCCAACCGGTGGATCTTGAGG
GCCTTGGCGGTGCCGTGGTTGTCAGACACTTGGTAGATGTCCAGCTCCTTGCCTACCCCGATCAG
GTTGCCCACCGAGTACACCAGGTCGCGGTTGAGCAACAGTTTGAGGGCCAAGTAGTCGTAGCCCG
CGTAGGTGAGGCGGAACCCGTCGTACTTGGCGTTCCGCAACCGCGACACGAGGTTGAGCTTGGCC
AAGTCTCCGATGGCCCGGTTGGTGGCGGAGGGGGCACGCATCCCGCCCTCCTTGTGGATCATGTG
GGTGGGCACCAACTCGTGGGAGCGGGCCCCGATCTCCACGCCCTGGAGGACCTTCCAGTCGTCCG
CGGTGAGGTACCGCATGTGGGAGGTGTCGAACTTCATTGTCGTGGAGGTTCCGTTGATAGCCGCG
ATGAGCTGCGAAAAACGAGATGGGAGGAGACGAAGGAGGATGAAC
Right flanking sequence: Indices 228154 -- 228653
CGAACGGAGGAGGAGCTTTTTAGGAGAGGAGGTAATTTTACAAGTGACGTATTGCGGGACATGGC
CAACCTGCCAGAGTCAAATCTACGGTGTCAATCTACGGTCTCAAAATCAACGGTGAAGATCAATA
TGGTTACATTAAACTGCCCATAATGACCAATACTATACGGCTATACGATCAAGTACCAAGGCCAT
TGTCCCTAGGCCATTGTCCCTAGGCCGTTACCCCTCTTGTACCAAGACCATTGCCTCTACATTTC
TCTCGTTTTATAACTTTTGTTTCACTATATTAAAAACCTACCCAAATGTGACAAAACCGGTACAA
ATCAAATAAAACCCAAAACCCTTTCTATAAGCATGCCTTTTCTTATCCCAAAAATCCAAATAACT
TTTAATTGCCTCAACAATCATGGTTTCAAAAGAAAAAGCCAGTCGAAAAGGTGTCGGAAACCGAT
GGTTTTCCCCCCACTCGAGCAAAATCAATCATGCAGTGTGGCTTA
Found at i:228361 original size:14 final size:14
Alignment explanation
Indices: 228342--228374 Score: 66
Period size: 14 Copynumber: 2.4 Consensus size: 14
228332 TCAAGTACCA
228342 AGGCCATTGTCCCT
1 AGGCCATTGTCCCT
228356 AGGCCATTGTCCCT
1 AGGCCATTGTCCCT
228370 AGGCC
1 AGGCC
228375 GTTACCCCTC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.15, C:0.36, G:0.24, T:0.24
Consensus pattern (14 bp):
AGGCCATTGTCCCT
Left flanking sequence: Indices 227842 -- 228341
GTTGAGCTTGGCCAAGTCTCCGATGGCCCGGTTGGTGGCGGAGGGGGCACGCATCCCGCCCTCCT
TGTGGATCATGTGGGTGGGCACCAACTCGTGGGAGCGGGCCCCGATCTCCACGCCCTGGAGGACC
TTCCAGTCGTCCGCGGTGAGGTACCGCATGTGGGAGGTGTCGAACTTCATTGTCGTGGAGGTTCC
GTTGATAGCCGCGATGAGCTGCGAAAAACGAGATGGGAGGAGACGAAGGAGGATGAACGGAGGAG
AGGATGAACGGAGGAGAGGATGAAAGGAGGAGAGGAAGAACGGAGGAGAGGACGAACGGAGGAGG
AGCTTTTTAGGAGAGGAGGTAATTTTACAAGTGACGTATTGCGGGACATGGCCAACCTGCCAGAG
TCAAATCTACGGTGTCAATCTACGGTCTCAAAATCAACGGTGAAGATCAATATGGTTACATTAAA
CTGCCCATAATGACCAATACTATACGGCTATACGATCAAGTACCA
Right flanking sequence: Indices 228375 -- 228874
GTTACCCCTCTTGTACCAAGACCATTGCCTCTACATTTCTCTCGTTTTATAACTTTTGTTTCACT
ATATTAAAAACCTACCCAAATGTGACAAAACCGGTACAAATCAAATAAAACCCAAAACCCTTTCT
ATAAGCATGCCTTTTCTTATCCCAAAAATCCAAATAACTTTTAATTGCCTCAACAATCATGGTTT
CAAAAGAAAAAGCCAGTCGAAAAGGTGTCGGAAACCGATGGTTTTCCCCCCACTCGAGCAAAATC
AATCATGCAGTGTGGCTTACCACCACAGCCCGGACGAGTTCTGGTTGCCGTAGCTGGACGAGAAC
CCGGAGCCGCGCGAAGCGCCCCACGAGGAGCCGGAGGAGCCCGACGAGCCCCACGACGAGCCGCC
GCCGTAGCTGGAGCCGCCGTAGCCGCCGCCGTAGCCACCGCCGGAACGTCTAAAGTCGCGGGCGG
GGCCTCTGCCGCCGCCACGACCGCGCGAGGGACCTCTGCCGTACG
Found at i:228734 original size:30 final size:30
Alignment explanation
Indices: 228700--228762 Score: 72
Period size: 30 Copynumber: 2.1 Consensus size: 30
228690 GGACGAGAAC
* * * *
228700 CCGGAGCCGCGCGAAGCGCCCCACGAGGAG
1 CCGGAGCAGCCCGAAGAGCCCCACGACGAG
* *
228730 CCGGAGGAGCCCGACGAGCCCCACGACGAG
1 CCGGAGCAGCCCGAAGAGCCCCACGACGAG
228760 CCG
1 CCG
228763 CCGCCGTAGC
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.21, C:0.41, G:0.38, T:0.00
Consensus pattern (30 bp):
CCGGAGCAGCCCGAAGAGCCCCACGACGAG
Left flanking sequence: Indices 228200 -- 228699
ACGTATTGCGGGACATGGCCAACCTGCCAGAGTCAAATCTACGGTGTCAATCTACGGTCTCAAAA
TCAACGGTGAAGATCAATATGGTTACATTAAACTGCCCATAATGACCAATACTATACGGCTATAC
GATCAAGTACCAAGGCCATTGTCCCTAGGCCATTGTCCCTAGGCCGTTACCCCTCTTGTACCAAG
ACCATTGCCTCTACATTTCTCTCGTTTTATAACTTTTGTTTCACTATATTAAAAACCTACCCAAA
TGTGACAAAACCGGTACAAATCAAATAAAACCCAAAACCCTTTCTATAAGCATGCCTTTTCTTAT
CCCAAAAATCCAAATAACTTTTAATTGCCTCAACAATCATGGTTTCAAAAGAAAAAGCCAGTCGA
AAAGGTGTCGGAAACCGATGGTTTTCCCCCCACTCGAGCAAAATCAATCATGCAGTGTGGCTTAC
CACCACAGCCCGGACGAGTTCTGGTTGCCGTAGCTGGACGAGAAC
Right flanking sequence: Indices 228763 -- 229262
CCGCCGTAGCTGGAGCCGCCGTAGCCGCCGCCGTAGCCACCGCCGGAACGTCTAAAGTCGCGGGC
GGGGCCTCTGCCGCCGCCACGACCGCGCGAGGGACCTCTGCCGTACGAGGACTCGCGGGCAACCC
GGGTCAAAAAGTCGGGTACCTCCTGGTTGGCCTCGGTCAAAAGCTCGACAAGGCCCTTGACCACC
GACTTGTTGTTGCGGTTGAAGAACGCAGTGGCGGTACCGGTGTTACCGGCACGCCCGGTACGACC
GATCCGGTGGACGTAGTCGTCAATGTCCAGCGGCAAGTCGTAGTTGATGACGTGGGAGACGTTGG
GAATGTCCAACCCACGCGCCGCGACGGCGGTGGCCACCAAAATCGGGGCCTGGCCGCTCTTAAAC
TGGGCAAGCGCCTTTTCACGCTCGTACTGCGAACGGTCACCGTGAATCGCGGTGGCGGGGATCCC
CTGGTCGTAGAGGTAGTCCGCCAAGTTGTCAGCCATCCGCTTGGT
Found at i:228792 original size:12 final size:12
Alignment explanation
Indices: 228758--228807 Score: 55
Period size: 12 Copynumber: 3.9 Consensus size: 12
228748 CCCCACGACG
228758 AGCCGCCGCCGT
1 AGCCGCCGCCGT
*
228770 AGCTGGAGCCGCCGT
1 AGC---CGCCGCCGT
228785 AGCCGCCGCCGT
1 AGCCGCCGCCGT
*
228797 AGCCACCGCCG
1 AGCCGCCGCCG
228808 GAACGTCTAA
Statistics
Matches: 32, Mismatches: 3, Indels: 6
0.78 0.07 0.15
Matches are distributed among these distances:
12 21 0.66
15 11 0.34
ACGTcount: A:0.12, C:0.46, G:0.34, T:0.08
Consensus pattern (12 bp):
AGCCGCCGCCGT
Left flanking sequence: Indices 228258 -- 228757
CTCAAAATCAACGGTGAAGATCAATATGGTTACATTAAACTGCCCATAATGACCAATACTATACG
GCTATACGATCAAGTACCAAGGCCATTGTCCCTAGGCCATTGTCCCTAGGCCGTTACCCCTCTTG
TACCAAGACCATTGCCTCTACATTTCTCTCGTTTTATAACTTTTGTTTCACTATATTAAAAACCT
ACCCAAATGTGACAAAACCGGTACAAATCAAATAAAACCCAAAACCCTTTCTATAAGCATGCCTT
TTCTTATCCCAAAAATCCAAATAACTTTTAATTGCCTCAACAATCATGGTTTCAAAAGAAAAAGC
CAGTCGAAAAGGTGTCGGAAACCGATGGTTTTCCCCCCACTCGAGCAAAATCAATCATGCAGTGT
GGCTTACCACCACAGCCCGGACGAGTTCTGGTTGCCGTAGCTGGACGAGAACCCGGAGCCGCGCG
AAGCGCCCCACGAGGAGCCGGAGGAGCCCGACGAGCCCCACGACG
Right flanking sequence: Indices 228808 -- 229307
GAACGTCTAAAGTCGCGGGCGGGGCCTCTGCCGCCGCCACGACCGCGCGAGGGACCTCTGCCGTA
CGAGGACTCGCGGGCAACCCGGGTCAAAAAGTCGGGTACCTCCTGGTTGGCCTCGGTCAAAAGCT
CGACAAGGCCCTTGACCACCGACTTGTTGTTGCGGTTGAAGAACGCAGTGGCGGTACCGGTGTTA
CCGGCACGCCCGGTACGACCGATCCGGTGGACGTAGTCGTCAATGTCCAGCGGCAAGTCGTAGTT
GATGACGTGGGAGACGTTGGGAATGTCCAACCCACGCGCCGCGACGGCGGTGGCCACCAAAATCG
GGGCCTGGCCGCTCTTAAACTGGGCAAGCGCCTTTTCACGCTCGTACTGCGAACGGTCACCGTGA
ATCGCGGTGGCGGGGATCCCCTGGTCGTAGAGGTAGTCCGCCAAGTTGTCAGCCATCCGCTTGGT
CTCGGTGAACACAATGGTCAAGCCCTGCTCGGCCGCCAGCAAAAT
Found at i:231094 original size:14 final size:14
Alignment explanation
Indices: 231075--231113 Score: 78
Period size: 14 Copynumber: 2.8 Consensus size: 14
231065 GGTTGAAGGG
231075 GTAGAGTGGGTGCT
1 GTAGAGTGGGTGCT
231089 GTAGAGTGGGTGCT
1 GTAGAGTGGGTGCT
231103 GTAGAGTGGGT
1 GTAGAGTGGGT
231114 TGTAGTTGGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 25 1.00
ACGTcount: A:0.15, C:0.05, G:0.51, T:0.28
Consensus pattern (14 bp):
GTAGAGTGGGTGCT
Left flanking sequence: Indices 230575 -- 231074
GTGAACCACGGTGGTAGCGGCGGCGGAAAGCGGTGTCACGGCGTCTGGGGCGAGCTGGCGGGTCG
TGTGGCCGCGGTGGCTTTTGGTTTCTGTTTGCGGGCCGATCCGCGCCCATTGGTTCGGATTGCTT
TTGTGGGTTCGGGAATTTTACGACGCGGTGGCAAAGAGGAGGCTATGGGAGGAGGCGGGATTTTA
GGACGGAGGAAAAATAGGGGCTAGACGAGAGGCGGTGGCCATTGCGAATTGGCGAGCGGGCGGGC
CGGGGGTGGGCACTACCGCTTCAGCGCTACGGTGGTTCGCTGCACGAGACCAGAAAGAAATTAAT
GCAGACGCGAAAAGAAGCAAAAAGGAATAAAAAGAACACGCTTGGCGGAGCGGCGCGGGCTCGCA
ACGCGGGTGATGGCCCGCGGCTGAGACAAAAGAAATAGGTGCGATAAGGTGATGGTTGGTGGGTG
GTGGGGGGCGGTGGTGTGGGGTGACTGGGTGGAGGGGTTGAAGGG
Right flanking sequence: Indices 231114 -- 231613
TGTAGTTGGAGGGGTTGTTTACGGATTTGTCAGAAACGACGGTGTTTCAGTCGGGGTCAGGCGAA
CAAGGGGCTAGACTGGGTGGTGCGCGACCCCGAGCGAGCCGGAACGGTTACAGGCGGGCCGTGGC
CGCTCGTAAGACGGCGGTGGTTCGTGACTATCAGTGTGACTAATAATAGTTGTAGGGGAGCGTGT
GGGCGGTGGGGAAACCGTGGTAGCAGGGTGGAGCCGGTGGTAGCAGGGTGGATCAGCAGTGGCTC
GTATACTAGTGAGTGTGGGGAAGGAGACGAGGCTGGAGAGACGAGGCTGTAGAGACGAGGCTGGA
GAACGGTTATAGAACAGGGGCCGGGCGAGAACAATGGCCAAGGATCATTGTTTCGGGGCTAACAA
CACTACTGAATGGTCGCTACGACGCTCAGGCGGGCCGGTGGCGGTGGTCTTGGCCTGTCTCAGGT
GGCACCTGGCGTGTCTCACACTGGCCAGATCACGTTACGAGTGAC
Found at i:231416 original size:14 final size:14
Alignment explanation
Indices: 231397--231440 Score: 79
Period size: 14 Copynumber: 3.1 Consensus size: 14
231387 TGTGGGGAAG
231397 GAGACGAGGCTGGA
1 GAGACGAGGCTGGA
*
231411 GAGACGAGGCTGTA
1 GAGACGAGGCTGGA
231425 GAGACGAGGCTGGA
1 GAGACGAGGCTGGA
231439 GA
1 GA
231441 ACGGTTATAG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
14 28 1.00
ACGTcount: A:0.30, C:0.14, G:0.48, T:0.09
Consensus pattern (14 bp):
GAGACGAGGCTGGA
Left flanking sequence: Indices 230897 -- 231396
AATGCAGACGCGAAAAGAAGCAAAAAGGAATAAAAAGAACACGCTTGGCGGAGCGGCGCGGGCTC
GCAACGCGGGTGATGGCCCGCGGCTGAGACAAAAGAAATAGGTGCGATAAGGTGATGGTTGGTGG
GTGGTGGGGGGCGGTGGTGTGGGGTGACTGGGTGGAGGGGTTGAAGGGGTAGAGTGGGTGCTGTA
GAGTGGGTGCTGTAGAGTGGGTTGTAGTTGGAGGGGTTGTTTACGGATTTGTCAGAAACGACGGT
GTTTCAGTCGGGGTCAGGCGAACAAGGGGCTAGACTGGGTGGTGCGCGACCCCGAGCGAGCCGGA
ACGGTTACAGGCGGGCCGTGGCCGCTCGTAAGACGGCGGTGGTTCGTGACTATCAGTGTGACTAA
TAATAGTTGTAGGGGAGCGTGTGGGCGGTGGGGAAACCGTGGTAGCAGGGTGGAGCCGGTGGTAG
CAGGGTGGATCAGCAGTGGCTCGTATACTAGTGAGTGTGGGGAAG
Right flanking sequence: Indices 231441 -- 231940
ACGGTTATAGAACAGGGGCCGGGCGAGAACAATGGCCAAGGATCATTGTTTCGGGGCTAACAACA
CTACTGAATGGTCGCTACGACGCTCAGGCGGGCCGGTGGCGGTGGTCTTGGCCTGTCTCAGGTGG
CACCTGGCGTGTCTCACACTGGCCAGATCACGTTACGAGTGACGATCCATCTCGGGTGATCCCGA
AGGACAGTTGCGCCAGCGAAGACCTTCGTTAATGCTGCCGTGCTCTGCCTTGTTCGTCTATTTTG
CCCGCGGGGAGCTCGCGGGGAGCCGGCAAATAGCCCGTGATTAGCCCGTGATTAGCCCACTTAGT
CATCCTTCCCCACCGCACCGTTATCACCGGCTGCAAGAAAGAACAAGGATAACGAAAAGCAAGGA
CAGCCAAGAGAAGATTGAGCGAGCAAATTGAGCGGTTGGGTGGTAGATATATATACACGTACGCA
AACACACGTCCACAAACACACTTCCACAAACACACATCACAAACA
Found at i:231745 original size:11 final size:11
Alignment explanation
Indices: 231731--231758 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
231721 AGCCGGCAAA
231731 TAGCCCGTGAT
1 TAGCCCGTGAT
231742 TAGCCCGTGAT
1 TAGCCCGTGAT
231753 TAGCCC
1 TAGCCC
231759 ACTTAGTCAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.18, C:0.32, G:0.25, T:0.25
Consensus pattern (11 bp):
TAGCCCGTGAT
Left flanking sequence: Indices 231231 -- 231730
GGCGGGCCGTGGCCGCTCGTAAGACGGCGGTGGTTCGTGACTATCAGTGTGACTAATAATAGTTG
TAGGGGAGCGTGTGGGCGGTGGGGAAACCGTGGTAGCAGGGTGGAGCCGGTGGTAGCAGGGTGGA
TCAGCAGTGGCTCGTATACTAGTGAGTGTGGGGAAGGAGACGAGGCTGGAGAGACGAGGCTGTAG
AGACGAGGCTGGAGAACGGTTATAGAACAGGGGCCGGGCGAGAACAATGGCCAAGGATCATTGTT
TCGGGGCTAACAACACTACTGAATGGTCGCTACGACGCTCAGGCGGGCCGGTGGCGGTGGTCTTG
GCCTGTCTCAGGTGGCACCTGGCGTGTCTCACACTGGCCAGATCACGTTACGAGTGACGATCCAT
CTCGGGTGATCCCGAAGGACAGTTGCGCCAGCGAAGACCTTCGTTAATGCTGCCGTGCTCTGCCT
TGTTCGTCTATTTTGCCCGCGGGGAGCTCGCGGGGAGCCGGCAAA
Right flanking sequence: Indices 231759 -- 232258
ACTTAGTCATCCTTCCCCACCGCACCGTTATCACCGGCTGCAAGAAAGAACAAGGATAACGAAAA
GCAAGGACAGCCAAGAGAAGATTGAGCGAGCAAATTGAGCGGTTGGGTGGTAGATATATATACAC
GTACGCAAACACACGTCCACAAACACACTTCCACAAACACACATCACAAACACACATCACAAACA
CACATCAACACCCACCCGTTGGAGCCGACCCTCCGGTTTGTGGCGGTTTGTGGCCCGGTTTGTGG
CCCCTCTATACGGGGACCCAGCCTCGTTAGGCTCACGAGACGTTGGGCCCATTTCTTTTTCTTAT
CGCCTCGGAAGACGTAAAGTTGTGTGCTCCCACCAACCACCAAGGTCCCGCCAGCGTTCCCCGGG
TGTCACACGCCCCGATCTCCTTACGCCCGACCCCTACCCTTATCACCTTGTCTATCGTTGTGGCG
GGCGATAGCGCGCGGTGACATCATAACCACCAAGAGCGAGTTCGG
Found at i:231956 original size:15 final size:13
Alignment explanation
Indices: 231894--231960 Score: 98
Period size: 13 Copynumber: 5.0 Consensus size: 13
231884 TACACGTACG
*
231894 CAAACACACGTCCA
1 CAAACACACAT-CA
*
231908 CAAACACACTTCCA
1 CAAACACACAT-CA
231922 CAAACACACATCA
1 CAAACACACATCA
231935 CAAACACACATCA
1 CAAACACACATCA
231948 CAAACACACATCA
1 CAAACACACATCA
231961 ACACCCACCC
Statistics
Matches: 51, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
13 28 0.55
14 23 0.45
ACGTcount: A:0.49, C:0.40, G:0.01, T:0.09
Consensus pattern (13 bp):
CAAACACACATCA
Left flanking sequence: Indices 231394 -- 231893
AAGGAGACGAGGCTGGAGAGACGAGGCTGTAGAGACGAGGCTGGAGAACGGTTATAGAACAGGGG
CCGGGCGAGAACAATGGCCAAGGATCATTGTTTCGGGGCTAACAACACTACTGAATGGTCGCTAC
GACGCTCAGGCGGGCCGGTGGCGGTGGTCTTGGCCTGTCTCAGGTGGCACCTGGCGTGTCTCACA
CTGGCCAGATCACGTTACGAGTGACGATCCATCTCGGGTGATCCCGAAGGACAGTTGCGCCAGCG
AAGACCTTCGTTAATGCTGCCGTGCTCTGCCTTGTTCGTCTATTTTGCCCGCGGGGAGCTCGCGG
GGAGCCGGCAAATAGCCCGTGATTAGCCCGTGATTAGCCCACTTAGTCATCCTTCCCCACCGCAC
CGTTATCACCGGCTGCAAGAAAGAACAAGGATAACGAAAAGCAAGGACAGCCAAGAGAAGATTGA
GCGAGCAAATTGAGCGGTTGGGTGGTAGATATATATACACGTACG
Right flanking sequence: Indices 231961 -- 232460
ACACCCACCCGTTGGAGCCGACCCTCCGGTTTGTGGCGGTTTGTGGCCCGGTTTGTGGCCCCTCT
ATACGGGGACCCAGCCTCGTTAGGCTCACGAGACGTTGGGCCCATTTCTTTTTCTTATCGCCTCG
GAAGACGTAAAGTTGTGTGCTCCCACCAACCACCAAGGTCCCGCCAGCGTTCCCCGGGTGTCACA
CGCCCCGATCTCCTTACGCCCGACCCCTACCCTTATCACCTTGTCTATCGTTGTGGCGGGCGATA
GCGCGCGGTGACATCATAACCACCAAGAGCGAGTTCGGTCATCCAGCCAGGCCCACGCGTTGCGC
GCGCGAGGGCCGTCCGCCCACCCCGTGGCCACAGAGTGGAACCCATTGAAACGACTCTCGGTCCA
GCCAGTGCGGGGCCCGTCGCGGTCCCGATAGCTCCTTTGTTTACCGTTGCTATGTGCCACCACTA
CACCGGTTCGAGCTCCACACAGGCTGTGTGCAGGTGAGACAGCCA
Found at i:232014 original size:12 final size:12
Alignment explanation
Indices: 231986--232021 Score: 58
Period size: 12 Copynumber: 3.2 Consensus size: 12
231976 AGCCGACCCT
231986 CCGGTTTGTGG-
1 CCGGTTTGTGGC
231997 -CGGTTTGTGGC
1 CCGGTTTGTGGC
232008 CCGGTTTGTGGC
1 CCGGTTTGTGGC
232020 CC
1 CC
232022 CTCTATACGG
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
10 10 0.43
12 13 0.57
ACGTcount: A:0.00, C:0.25, G:0.42, T:0.33
Consensus pattern (12 bp):
CCGGTTTGTGGC
Left flanking sequence: Indices 231486 -- 231985
TTGTTTCGGGGCTAACAACACTACTGAATGGTCGCTACGACGCTCAGGCGGGCCGGTGGCGGTGG
TCTTGGCCTGTCTCAGGTGGCACCTGGCGTGTCTCACACTGGCCAGATCACGTTACGAGTGACGA
TCCATCTCGGGTGATCCCGAAGGACAGTTGCGCCAGCGAAGACCTTCGTTAATGCTGCCGTGCTC
TGCCTTGTTCGTCTATTTTGCCCGCGGGGAGCTCGCGGGGAGCCGGCAAATAGCCCGTGATTAGC
CCGTGATTAGCCCACTTAGTCATCCTTCCCCACCGCACCGTTATCACCGGCTGCAAGAAAGAACA
AGGATAACGAAAAGCAAGGACAGCCAAGAGAAGATTGAGCGAGCAAATTGAGCGGTTGGGTGGTA
GATATATATACACGTACGCAAACACACGTCCACAAACACACTTCCACAAACACACATCACAAACA
CACATCACAAACACACATCAACACCCACCCGTTGGAGCCGACCCT
Right flanking sequence: Indices 232022 -- 232521
CTCTATACGGGGACCCAGCCTCGTTAGGCTCACGAGACGTTGGGCCCATTTCTTTTTCTTATCGC
CTCGGAAGACGTAAAGTTGTGTGCTCCCACCAACCACCAAGGTCCCGCCAGCGTTCCCCGGGTGT
CACACGCCCCGATCTCCTTACGCCCGACCCCTACCCTTATCACCTTGTCTATCGTTGTGGCGGGC
GATAGCGCGCGGTGACATCATAACCACCAAGAGCGAGTTCGGTCATCCAGCCAGGCCCACGCGTT
GCGCGCGCGAGGGCCGTCCGCCCACCCCGTGGCCACAGAGTGGAACCCATTGAAACGACTCTCGG
TCCAGCCAGTGCGGGGCCCGTCGCGGTCCCGATAGCTCCTTTGTTTACCGTTGCTATGTGCCACC
ACTACACCGGTTCGAGCTCCACACAGGCTGTGTGCAGGTGAGACAGCCATAGCAAGTGGCCACGA
AACGAGCCACGGCCGCCCGCAAAGCCAGAGCCCGCCAAAACCGCC
Found at i:234437 original size:17 final size:17
Alignment explanation
Indices: 234415--234468 Score: 108
Period size: 17 Copynumber: 3.2 Consensus size: 17
234405 TTGGTTAGTA
234415 ATGTAACGTGAGTATTG
1 ATGTAACGTGAGTATTG
234432 ATGTAACGTGAGTATTG
1 ATGTAACGTGAGTATTG
234449 ATGTAACGTGAGTATTG
1 ATGTAACGTGAGTATTG
234466 ATG
1 ATG
234469 AAGTGAAATT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 37 1.00
ACGTcount: A:0.30, C:0.06, G:0.30, T:0.35
Consensus pattern (17 bp):
ATGTAACGTGAGTATTG
Left flanking sequence: Indices 233915 -- 234414
CCACGTGTGCGGGTTGTTGCTGTACTTCTTGTCGCTCCAGCCCGGCAAGGGCCTGGAGTTCTACG
CCGAGAACGCGGTGACGCCCAAGCAGCTCAAGAAGAACTTGATTGCCTACGGGTCCAAGAACTTG
TTGTCGGACATTCCCCAGGACGGGACCCCCAACATCCTCATTTTCAACGGTGCTGGCCACAACTT
GACGGATTTCTGGGGCGAGGAAGAGACCACCTCCGGCAAGTCGTTGAAGGAGACGATTGCCGACA
TGGAGACCAAGGTGTCGCTGATGTTTGCCGAGTTGAAGCTGGGCCTCTTTTGAATGACTAACGAA
TAGAATGTGAAAAATAGATGATAAGATAATGGAATGTAGGGAAGCCCTGGGAAAGATAGGTGATG
TCAAACGGTTTAGGACATGCACGTGAGCTCAAGTCAGGTGAAGTGGTGAGGAATGAGGAATGGAT
ATGTATTGGAAGTGAAATGTCACGTGACACGATTTTTGGTTAGTA
Right flanking sequence: Indices 234469 -- 234968
AAGTGAAATTAGTCACGTGAAATTCTTCCCGTGAATGATGTCACGTGTACTCGTCCCGGGCTATA
CCCACTGGGAGGTAGTTATACAACCTGATGGGCTGGGAATGGTTTGACTTGGCAGACCCCTCTTA
TCCCTCTGTCAACATGTCGATCCGCCAATCGTTGCATAATGAAGGGGGTTACTCAAGACGGAAGG
TTGCTCAACAGGAGTACCCATCAATTCCAGGATTGACACTTAACCTTTACGGTACCCTCCTAAAG
GCACGGGTGCCCCTATTCCACGAAATGTCCCCTCTGCCCCTGTGTAATCCTTGTTTGTCCCCTCG
CCACCGCACTCCTTCCCTGACCACCACCCACTTGTGGCCCGCCACAAACAGCAATACTTAGCGAG
ACCTCTTGCGAACTCTCGCGACCTCTCGAGACCCCTCCAAACCCCTCGCTTTCTCTTTCTAACGA
GCCTTACCCCGTAGCCGGGTGCCTGACTACTGTCACCACGTCACC
Found at i:239261 original size:27 final size:28
Alignment explanation
Indices: 239223--239292 Score: 99
Period size: 29 Copynumber: 2.5 Consensus size: 28
239213 ATGGCGACGT
*
239223 AACGAAGATCCAATGGCGA-TGA-AAGAA
1 AACGAAGATCCAATGG-GACTAATAAGAA
239250 AACGAAGATCCAATGGGACGTAATAAGAA
1 AACGAAGATCCAATGGGAC-TAATAAGAA
239279 AACGAAGATCCAAT
1 AACGAAGATCCAAT
239293 AACCGAGGTT
Statistics
Matches: 39, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
26 2 0.05
27 16 0.41
28 2 0.05
29 19 0.49
ACGTcount: A:0.49, C:0.16, G:0.23, T:0.13
Consensus pattern (28 bp):
AACGAAGATCCAATGGGACTAATAAGAA
Left flanking sequence: Indices 238723 -- 239222
ATGGAAACGAACAATACGAAAGAAGGAAGATGGTTGGAATAAAATAATGGTTGATGTATAACGGC
CGAGATGGTGGCTGCAAAAGATGGTTGGGATACGAAGTAAAGAGGTGGACGTGGGGGAAGTCGAT
TATGGGGCATTCAGGCCGAAATACCGAAACACCCACTAAAGACAAAGAATTATCGGTGGACAGCG
GTGGTACAGATGCCCTAGCTACTCGTATTTATTTTTCAGCAGACAGACGGATCGCCAGGCCGGAA
ACGTAAGAGGCAGTCAGAGCTCCAGGATGGAACTGCCGTTTTGAGTATAGAATGTGGGCACGCTT
CTCAGACACTGGACGAAAGTGACCTGAGAATGCATTAGTTGGCGTCGACACGAGTCCATTGCCAT
CGACTAACGATTAGGCTGGACATTCACCGTTGAAACCGTTTGGACGGTGGTGACTGAGTGGACTG
AAACCAGCTAAAGACGTGCTAAAAGCGAAGATCCAATGGCGACGT
Right flanking sequence: Indices 239293 -- 239792
AACCGAGGTTTCATGCTAGATCGATGGTTGGAAAGGAATTTGATAAACACGGACCATTTTGAACA
AATCACGAAGGATAATAAAAAACCACGAGGTTTTTAAAATGAGCCACGAGGATTTCAAAACAATC
ACGAAGGATTTTAAAACAATCACGGAGGATGTTAAAACACGAATGATTTTAAAACAAACCTTGAG
TTAATTTTAAAACACACCACAACCACGAAGAAATTTCTTGGTAAACCCACGAAGGGTTTTAAAAC
AAATCATGAAAGCTCTTTTAAAACAATCCACGGGGTAGAACAAACCACGAGGACTGAAGAAAGAA
AATAAGGCATTAAAGCACTGGACAAGTTATATATTCAACCTTATGGTGATTCAAATAAAGTTTAT
CTATCATGTTGATGGCGTGTAAATTCCCACCAACCACACCTTCTACATCCTTTCCGTAATTATTC
AATGACTATTCTATGATGGTATGTACAGTGGATACCCGTCTTGGC
Found at i:239430 original size:21 final size:19
Alignment explanation
Indices: 239402--239461 Score: 75
Period size: 21 Copynumber: 2.9 Consensus size: 19
239392 TAAAATGAGC
239402 CACGAGGATTTCAAAACAAT
1 CACGAGGATTT-AAAACAAT
239422 CACGAAGGATTTTAAAACAAT
1 CACG-AGGA-TTTAAAACAAT
239443 CACGGAGGATGTTAAAACA
1 CAC-GAGGAT-TTAAAACA
239462 CGAATGATTT
Statistics
Matches: 36, Mismatches: 0, Indels: 7
0.84 0.00 0.16
Matches are distributed among these distances:
20 5 0.14
21 27 0.75
22 4 0.11
ACGTcount: A:0.45, C:0.17, G:0.18, T:0.20
Consensus pattern (19 bp):
CACGAGGATTTAAAACAAT
Left flanking sequence: Indices 238902 -- 239401
TTATCGGTGGACAGCGGTGGTACAGATGCCCTAGCTACTCGTATTTATTTTTCAGCAGACAGACG
GATCGCCAGGCCGGAAACGTAAGAGGCAGTCAGAGCTCCAGGATGGAACTGCCGTTTTGAGTATA
GAATGTGGGCACGCTTCTCAGACACTGGACGAAAGTGACCTGAGAATGCATTAGTTGGCGTCGAC
ACGAGTCCATTGCCATCGACTAACGATTAGGCTGGACATTCACCGTTGAAACCGTTTGGACGGTG
GTGACTGAGTGGACTGAAACCAGCTAAAGACGTGCTAAAAGCGAAGATCCAATGGCGACGTAACG
AAGATCCAATGGCGATGAAAGAAAACGAAGATCCAATGGGACGTAATAAGAAAACGAAGATCCAA
TAACCGAGGTTTCATGCTAGATCGATGGTTGGAAAGGAATTTGATAAACACGGACCATTTTGAAC
AAATCACGAAGGATAATAAAAAACCACGAGGTTTTTAAAATGAGC
Right flanking sequence: Indices 239462 -- 239961
CGAATGATTTTAAAACAAACCTTGAGTTAATTTTAAAACACACCACAACCACGAAGAAATTTCTT
GGTAAACCCACGAAGGGTTTTAAAACAAATCATGAAAGCTCTTTTAAAACAATCCACGGGGTAGA
ACAAACCACGAGGACTGAAGAAAGAAAATAAGGCATTAAAGCACTGGACAAGTTATATATTCAAC
CTTATGGTGATTCAAATAAAGTTTATCTATCATGTTGATGGCGTGTAAATTCCCACCAACCACAC
CTTCTACATCCTTTCCGTAATTATTCAATGACTATTCTATGATGGTATGTACAGTGGATACCCGT
CTTGGCTCTGAAGCCGAGTTGTAGGATAGGGTCCAAGGAGTAGCAATGGTTCGAATTAGCATGGT
TTATCAGCAATGCTTTAAGCAATGCTTTAAGCAATGGCCTCTGAGCTCAGCTTAAAGGCCCACTT
GGCTCACCAACTTCTATGCATCGTCCGTCTCGCCGTTGGCAAACA
Found at i:239481 original size:21 final size:21
Alignment explanation
Indices: 239354--239481 Score: 72
Period size: 21 Copynumber: 6.3 Consensus size: 21
239344 GACCATTTTG
**
239354 AACAAATCACGAAGGATAATAA
1 AACAAA-CACGAAGGATTTTAA
* *
239376 AA-AACCACG-AGGTTTTTAA
1 AACAAACACGAAGGATTTTAA
* ** *
239395 AATGAGCCACG-AGGATTTCAA
1 AA-CAAACACGAAGGATTTTAA
*
239416 AACAATCACGAAGGATTTTAA
1 AACAAACACGAAGGATTTTAA
* * *
239437 AACAATCACGGAGGATGTT--
1 AACAAACACGAAGGATTTTAA
*
239456 -A-AAACACGAATGATTTTAA
1 AACAAACACGAAGGATTTTAA
239475 AACAAAC
1 AACAAAC
239482 CTTGAGTTAA
Statistics
Matches: 82, Mismatches: 17, Indels: 15
0.72 0.15 0.13
Matches are distributed among these distances:
17 12 0.15
18 1 0.01
19 9 0.11
20 10 0.12
21 48 0.59
22 2 0.02
ACGTcount: A:0.48, C:0.16, G:0.16, T:0.20
Consensus pattern (21 bp):
AACAAACACGAAGGATTTTAA
Left flanking sequence: Indices 238854 -- 239353
ATGGGGCATTCAGGCCGAAATACCGAAACACCCACTAAAGACAAAGAATTATCGGTGGACAGCGG
TGGTACAGATGCCCTAGCTACTCGTATTTATTTTTCAGCAGACAGACGGATCGCCAGGCCGGAAA
CGTAAGAGGCAGTCAGAGCTCCAGGATGGAACTGCCGTTTTGAGTATAGAATGTGGGCACGCTTC
TCAGACACTGGACGAAAGTGACCTGAGAATGCATTAGTTGGCGTCGACACGAGTCCATTGCCATC
GACTAACGATTAGGCTGGACATTCACCGTTGAAACCGTTTGGACGGTGGTGACTGAGTGGACTGA
AACCAGCTAAAGACGTGCTAAAAGCGAAGATCCAATGGCGACGTAACGAAGATCCAATGGCGATG
AAAGAAAACGAAGATCCAATGGGACGTAATAAGAAAACGAAGATCCAATAACCGAGGTTTCATGC
TAGATCGATGGTTGGAAAGGAATTTGATAAACACGGACCATTTTG
Right flanking sequence: Indices 239482 -- 239981
CTTGAGTTAATTTTAAAACACACCACAACCACGAAGAAATTTCTTGGTAAACCCACGAAGGGTTT
TAAAACAAATCATGAAAGCTCTTTTAAAACAATCCACGGGGTAGAACAAACCACGAGGACTGAAG
AAAGAAAATAAGGCATTAAAGCACTGGACAAGTTATATATTCAACCTTATGGTGATTCAAATAAA
GTTTATCTATCATGTTGATGGCGTGTAAATTCCCACCAACCACACCTTCTACATCCTTTCCGTAA
TTATTCAATGACTATTCTATGATGGTATGTACAGTGGATACCCGTCTTGGCTCTGAAGCCGAGTT
GTAGGATAGGGTCCAAGGAGTAGCAATGGTTCGAATTAGCATGGTTTATCAGCAATGCTTTAAGC
AATGCTTTAAGCAATGGCCTCTGAGCTCAGCTTAAAGGCCCACTTGGCTCACCAACTTCTATGCA
TCGTCCGTCTCGCCGTTGGCAAACACCACCGCGGGCTCGTCGTGC
Found at i:239874 original size:12 final size:12
Alignment explanation
Indices: 239857--239887 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
239847 ATGGTTTATC
239857 AGCAATGCTTTA
1 AGCAATGCTTTA
239869 AGCAATGCTTTA
1 AGCAATGCTTTA
239881 AGCAATG
1 AGCAATG
239888 GCCTCTGAGC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.35, C:0.16, G:0.19, T:0.29
Consensus pattern (12 bp):
AGCAATGCTTTA
Left flanking sequence: Indices 239357 -- 239856
AAATCACGAAGGATAATAAAAAACCACGAGGTTTTTAAAATGAGCCACGAGGATTTCAAAACAAT
CACGAAGGATTTTAAAACAATCACGGAGGATGTTAAAACACGAATGATTTTAAAACAAACCTTGA
GTTAATTTTAAAACACACCACAACCACGAAGAAATTTCTTGGTAAACCCACGAAGGGTTTTAAAA
CAAATCATGAAAGCTCTTTTAAAACAATCCACGGGGTAGAACAAACCACGAGGACTGAAGAAAGA
AAATAAGGCATTAAAGCACTGGACAAGTTATATATTCAACCTTATGGTGATTCAAATAAAGTTTA
TCTATCATGTTGATGGCGTGTAAATTCCCACCAACCACACCTTCTACATCCTTTCCGTAATTATT
CAATGACTATTCTATGATGGTATGTACAGTGGATACCCGTCTTGGCTCTGAAGCCGAGTTGTAGG
ATAGGGTCCAAGGAGTAGCAATGGTTCGAATTAGCATGGTTTATC
Right flanking sequence: Indices 239888 -- 240387
GCCTCTGAGCTCAGCTTAAAGGCCCACTTGGCTCACCAACTTCTATGCATCGTCCGTCTCGCCGT
TGGCAAACACCACCGCGGGCTCGTCGTGCTCCTCGGGCTCCTCGTCGTCGTCGCTGTCCCCGCCA
AGCTTGCGCAACGACCCCTGGCTCTTGAGCAACTGGAGCCGTCCCTGGAGCGCCAACAAGTGCTT
GAGCACCTTCATCCCCTCGCCCAACTGGCTCTCGAGCCGCCGGAGCGGCTCCATCACCATCGGGT
CCCCCGCGAGCGCCAGCCCGTGGAGCAAGAGGAGCCACCGGAGCCACAGCAGCACCAGCAGCAGC
GCCAGCGGGTCCAGTGCCACCTCGTCCGCCACCACCACAAACAACGGCAGGGCCTCGGTGTGGAA
CAACTTGACGGTGTGCTTGATGGTGTCGTCGTCGGTGGTGGCACTGCACAACACCAACACCGCGT
CCGAGTCCTCCTGGGCCAAAGCGTCCACGAGGGCCCGGTGGAGCA
Found at i:242442 original size:16 final size:16
Alignment explanation
Indices: 242421--242635 Score: 103
Period size: 14 Copynumber: 13.3 Consensus size: 16
242411 AAATGACACC
242421 GAATCTCTCTAGACCT
1 GAATCTCTCTAGACCT
242437 GAA--TCTCTAGACCT
1 GAATCTCTCTAGACCT
242451 GAA--TCTCTAGACCT
1 GAATCTCTCTAGACCT
*
242465 GAATATCTCTAGACCTAT
1 GAATCTCTCTAGACC--T
* *
242483 CAATCACT-TCAGACCT
1 GAATCTCTCT-AGACCT
* *
242499 GAATATCTCCAGACCT
1 GAATCTCTCTAGACCT
* *
242515 GAATTTGTCTAGACCT
1 GAATCTCTCTAGACCT
*
242531 -ATAGTCTCTCT-GAATTTCTAT
1 GA-A-TCTCTCTAG-A---C-CT
*
242552 GAATCTCTCTAGATCTAT
1 GAATCTCTCTAGA-C-CT
* *
242570 GAGTCTCT-TTGACCAGT
1 GAATCTCTCTAGACC--T
*
242587 GAGTCTCTCTAGACCT
1 GAATCTCTCTAGACCT
242603 --ATCTCTCTAGACCT
1 GAATCTCTCTAGACCT
*
242617 --ATCTCTCTAAACCT
1 GAATCTCTCTAGACCT
242631 GAATC
1 GAATC
242636 CCCCCAAACC
Statistics
Matches: 160, Mismatches: 19, Indels: 40
0.73 0.09 0.18
Matches are distributed among these distances:
14 54 0.34
15 1 0.01
16 45 0.28
17 19 0.12
18 28 0.17
20 9 0.06
21 3 0.02
22 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.13, T:0.33
Consensus pattern (16 bp):
GAATCTCTCTAGACCT
Left flanking sequence: Indices 241921 -- 242420
GCTACGACACCTTCTCCAGTTTCACTTCTAGACTCATATCGAGTAAAATGACATCTAGACCTATG
GTCTATCTCTATTTTGAAAGACGTTACCACGGTGGGTTAGTATCCTGTTCTGCGGTGAACTAGCC
TTAAGTGGAGTGTTAGTCGTGTTCTCTGCTCACTATTCAATGGATAGGCTCAGATAGGCCATTCT
CTTAATCAATATACCACTTCTAGCTCTCGCTGCCTCACTATGGTGCTGAGACGACGGGTAGTGTG
AATATTCGGGCGCTCGAACTGTGGGTTTGGCCAGTATTTGAATTAATCCGCTTGGTTAATATGAT
ATGAAGCGTATCTGATAACTAATGTGGCCCATATAAAGTCTGATGGAATTTATATCGCCTATAAT
CGGTGGTGTTGTATAAGGGAGAATTCGTCATCAAGGTTTCCCCAATAGAGTCTTTACCACCACCT
CTAAACCCAATCAATCGCCCTAGCCGTATGGAAGAAAATGACACC
Right flanking sequence: Indices 242636 -- 243135
CCCCCAAACCTATTCTTCTCTCCATCACACTACCAAAACAGCTGGGTCCGAATGAATGACATCCA
TACCTATGAATCTATCTATGTATCTCAAAGCTGGTACGACGAGGCTCTCGCACAATAAAGACCAC
TCATACCACCATTATCACTGTAGTAATGGTCTCGCAGTTCACTGGCAGCCTCATTAGCAGTCTCT
AGCAGTCTCACTGGCAGTCTCACTGGCAGTCTCACTACCTACCCCCTGTAGTCACCCTTGTAGTC
TTGCACTCACCTCTTCCCCACCGCCTCTTGCATCTCCACCATCTGCTGCACCTGCAGCCGCAACA
AGTCCTTCAAGTCCACCACGTCGGCCTCGAGCTCCTGCACCTGCTCGGTCTTCTCGCCAAGCACC
TCCAACATCGTGCGCTCCTTCGCCTGCTGGCGCTCCAACGCCTGCCTAAGCTCTGCGAGCTCCTT
CTCGTGCGCCTCGGCCCCCTCCACCCGCCGCAACAGCGCCAAGTA
Found at i:242840 original size:22 final size:22
Alignment explanation
Indices: 242810--242851 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
242800 CAGTTCACTG
*
242810 GCAGCCTCATTAGCAGTCTCTA
1 GCAGCCTCACTAGCAGTCTCTA
* *
242832 GCAGTCTCACTGGCAGTCTC
1 GCAGCCTCACTAGCAGTCTC
242852 ACTGGCAGTC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.19, C:0.33, G:0.21, T:0.26
Consensus pattern (22 bp):
GCAGCCTCACTAGCAGTCTCTA
Left flanking sequence: Indices 242310 -- 242809
TCGGTGGTGTTGTATAAGGGAGAATTCGTCATCAAGGTTTCCCCAATAGAGTCTTTACCACCACC
TCTAAACCCAATCAATCGCCCTAGCCGTATGGAAGAAAATGACACCGAATCTCTCTAGACCTGAA
TCTCTAGACCTGAATCTCTAGACCTGAATATCTCTAGACCTATCAATCACTTCAGACCTGAATAT
CTCCAGACCTGAATTTGTCTAGACCTATAGTCTCTCTGAATTTCTATGAATCTCTCTAGATCTAT
GAGTCTCTTTGACCAGTGAGTCTCTCTAGACCTATCTCTCTAGACCTATCTCTCTAAACCTGAAT
CCCCCCAAACCTATTCTTCTCTCCATCACACTACCAAAACAGCTGGGTCCGAATGAATGACATCC
ATACCTATGAATCTATCTATGTATCTCAAAGCTGGTACGACGAGGCTCTCGCACAATAAAGACCA
CTCATACCACCATTATCACTGTAGTAATGGTCTCGCAGTTCACTG
Right flanking sequence: Indices 242852 -- 243351
ACTGGCAGTCTCACTACCTACCCCCTGTAGTCACCCTTGTAGTCTTGCACTCACCTCTTCCCCAC
CGCCTCTTGCATCTCCACCATCTGCTGCACCTGCAGCCGCAACAAGTCCTTCAAGTCCACCACGT
CGGCCTCGAGCTCCTGCACCTGCTCGGTCTTCTCGCCAAGCACCTCCAACATCGTGCGCTCCTTC
GCCTGCTGGCGCTCCAACGCCTGCCTAAGCTCTGCGAGCTCCTTCTCGTGCGCCTCGGCCCCCTC
CACCCGCCGCAACAGCGCCAAGTACTGCTCGGAGAGCTCGTGGTTCAGCCGCTGGAGCTGGGCGT
TGTCCTCGCGCACCGTGGCCATCTCCACCTCGAGCCGCCGCACCAGCGCCGCCATCTGGCTGAGC
ACGTGCACGTGGCCGGTCTGTGGCCCGTCGTCAAACAGGCGTTGGATGGTGTCGCGGTCCAGCTC
CAGGCCCAAGTCCGACACCCCGGAGACCACCAGGGGCTTGCGAGA
Found at i:242842 original size:34 final size:33
Alignment explanation
Indices: 242799--242863 Score: 94
Period size: 34 Copynumber: 1.9 Consensus size: 33
242789 TAATGGTCTC
*
242799 GCAGTTCACTGGCAGCCTCATTAGCAGTCTCTA
1 GCAGTTCACTGGCAGCCTCACTAGCAGTCTCTA
* *
242832 GCAGTCTCACTGGCAGTCTCACTGGCAGTCTC
1 GCAGT-TCACTGGCAGCCTCACTAGCAGTCTC
242864 ACTACCTACC
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
33 5 0.18
34 23 0.82
ACGTcount: A:0.18, C:0.32, G:0.23, T:0.26
Consensus pattern (33 bp):
GCAGTTCACTGGCAGCCTCACTAGCAGTCTCTA
Left flanking sequence: Indices 242299 -- 242798
ATCGCCTATAATCGGTGGTGTTGTATAAGGGAGAATTCGTCATCAAGGTTTCCCCAATAGAGTCT
TTACCACCACCTCTAAACCCAATCAATCGCCCTAGCCGTATGGAAGAAAATGACACCGAATCTCT
CTAGACCTGAATCTCTAGACCTGAATCTCTAGACCTGAATATCTCTAGACCTATCAATCACTTCA
GACCTGAATATCTCCAGACCTGAATTTGTCTAGACCTATAGTCTCTCTGAATTTCTATGAATCTC
TCTAGATCTATGAGTCTCTTTGACCAGTGAGTCTCTCTAGACCTATCTCTCTAGACCTATCTCTC
TAAACCTGAATCCCCCCAAACCTATTCTTCTCTCCATCACACTACCAAAACAGCTGGGTCCGAAT
GAATGACATCCATACCTATGAATCTATCTATGTATCTCAAAGCTGGTACGACGAGGCTCTCGCAC
AATAAAGACCACTCATACCACCATTATCACTGTAGTAATGGTCTC
Right flanking sequence: Indices 242864 -- 243363
ACTACCTACCCCCTGTAGTCACCCTTGTAGTCTTGCACTCACCTCTTCCCCACCGCCTCTTGCAT
CTCCACCATCTGCTGCACCTGCAGCCGCAACAAGTCCTTCAAGTCCACCACGTCGGCCTCGAGCT
CCTGCACCTGCTCGGTCTTCTCGCCAAGCACCTCCAACATCGTGCGCTCCTTCGCCTGCTGGCGC
TCCAACGCCTGCCTAAGCTCTGCGAGCTCCTTCTCGTGCGCCTCGGCCCCCTCCACCCGCCGCAA
CAGCGCCAAGTACTGCTCGGAGAGCTCGTGGTTCAGCCGCTGGAGCTGGGCGTTGTCCTCGCGCA
CCGTGGCCATCTCCACCTCGAGCCGCCGCACCAGCGCCGCCATCTGGCTGAGCACGTGCACGTGG
CCGGTCTGTGGCCCGTCGTCAAACAGGCGTTGGATGGTGTCGCGGTCCAGCTCCAGGCCCAAGTC
CGACACCCCGGAGACCACCAGGGGCTTGCGAGAACGGGGGACGAA
Found at i:242849 original size:12 final size:12
Alignment explanation
Indices: 242799--242866 Score: 79
Period size: 12 Copynumber: 5.9 Consensus size: 12
242789 TAATGGTCTC
242799 GCAGT-TCACTG
1 GCAGTCTCACTG
* * *
242810 GCAGCCTCATTA
1 GCAGTCTCACTG
*
242822 GCAGTCT--CTA
1 GCAGTCTCACTG
242832 GCAGTCTCACTG
1 GCAGTCTCACTG
242844 GCAGTCTCACTG
1 GCAGTCTCACTG
242856 GCAGTCTCACT
1 GCAGTCTCACT
242867 ACCTACCCCC
Statistics
Matches: 48, Mismatches: 6, Indels: 5
0.81 0.10 0.08
Matches are distributed among these distances:
10 9 0.19
11 4 0.08
12 35 0.73
ACGTcount: A:0.19, C:0.32, G:0.22, T:0.26
Consensus pattern (12 bp):
GCAGTCTCACTG
Left flanking sequence: Indices 242299 -- 242798
ATCGCCTATAATCGGTGGTGTTGTATAAGGGAGAATTCGTCATCAAGGTTTCCCCAATAGAGTCT
TTACCACCACCTCTAAACCCAATCAATCGCCCTAGCCGTATGGAAGAAAATGACACCGAATCTCT
CTAGACCTGAATCTCTAGACCTGAATCTCTAGACCTGAATATCTCTAGACCTATCAATCACTTCA
GACCTGAATATCTCCAGACCTGAATTTGTCTAGACCTATAGTCTCTCTGAATTTCTATGAATCTC
TCTAGATCTATGAGTCTCTTTGACCAGTGAGTCTCTCTAGACCTATCTCTCTAGACCTATCTCTC
TAAACCTGAATCCCCCCAAACCTATTCTTCTCTCCATCACACTACCAAAACAGCTGGGTCCGAAT
GAATGACATCCATACCTATGAATCTATCTATGTATCTCAAAGCTGGTACGACGAGGCTCTCGCAC
AATAAAGACCACTCATACCACCATTATCACTGTAGTAATGGTCTC
Right flanking sequence: Indices 242867 -- 243366
ACCTACCCCCTGTAGTCACCCTTGTAGTCTTGCACTCACCTCTTCCCCACCGCCTCTTGCATCTC
CACCATCTGCTGCACCTGCAGCCGCAACAAGTCCTTCAAGTCCACCACGTCGGCCTCGAGCTCCT
GCACCTGCTCGGTCTTCTCGCCAAGCACCTCCAACATCGTGCGCTCCTTCGCCTGCTGGCGCTCC
AACGCCTGCCTAAGCTCTGCGAGCTCCTTCTCGTGCGCCTCGGCCCCCTCCACCCGCCGCAACAG
CGCCAAGTACTGCTCGGAGAGCTCGTGGTTCAGCCGCTGGAGCTGGGCGTTGTCCTCGCGCACCG
TGGCCATCTCCACCTCGAGCCGCCGCACCAGCGCCGCCATCTGGCTGAGCACGTGCACGTGGCCG
GTCTGTGGCCCGTCGTCAAACAGGCGTTGGATGGTGTCGCGGTCCAGCTCCAGGCCCAAGTCCGA
CACCCCGGAGACCACCAGGGGCTTGCGAGAACGGGGGACGAAGAG
Found at i:243573 original size:12 final size:12
Alignment explanation
Indices: 243556--243612 Score: 60
Period size: 12 Copynumber: 4.8 Consensus size: 12
243546 CAAACAGGCG
* *
243556 GCTTTCCGGTCT
1 GCTTTCCAGCCT
243568 GCTTTCCAGCCT
1 GCTTTCCAGCCT
*
243580 GCTTTCCCGCCT
1 GCTTTCCAGCCT
* *
243592 GCTTCCCAGTCT
1 GCTTTCCAGCCT
*
243604 GCTTCCCAG
1 GCTTTCCAG
243613 GCGTCTTTCG
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
12 39 1.00
ACGTcount: A:0.05, C:0.42, G:0.19, T:0.33
Consensus pattern (12 bp):
GCTTTCCAGCCT
Left flanking sequence: Indices 243056 -- 243555
CGCTCCAACGCCTGCCTAAGCTCTGCGAGCTCCTTCTCGTGCGCCTCGGCCCCCTCCACCCGCCG
CAACAGCGCCAAGTACTGCTCGGAGAGCTCGTGGTTCAGCCGCTGGAGCTGGGCGTTGTCCTCGC
GCACCGTGGCCATCTCCACCTCGAGCCGCCGCACCAGCGCCGCCATCTGGCTGAGCACGTGCACG
TGGCCGGTCTGTGGCCCGTCGTCAAACAGGCGTTGGATGGTGTCGCGGTCCAGCTCCAGGCCCAA
GTCCGACACCCCGGAGACCACCAGGGGCTTGCGAGAACGGGGGACGAAGAGGTCCAGGCGGCTGT
CCGAGACGGTGATATTCTGGTCGGAAGAAACTCTCGCAAAGTCCCGGTCGGATCTCGCAAAGTCC
AGTCTGTCAGAAGACACACGGGCCAACTCGGTCCTGGAGTCGCCTCGGGAGTCTCGGGAGTCTCG
GTCGCCTCGGGAGTCGCGTAAGTGGTCCAGCGACCCAAACAGGCG
Right flanking sequence: Indices 243613 -- 244112
GCGTCTTTCGCGGCTCTCCAGGCGGCTTTCCCGGGTCTCTGGGCCCTCGGGAAGCGTGGGGATGT
TGCCCAACGACGGGATCCGCTCAGCAATGGTAAAGGGACGTTCGTTAAACGAGCGGTCATTAAAC
GAGCGGTCACGGTCAGTAAACGAGCGGTCATTAAACAGACGCTCGTTAAAAGAACGCTCGTTTCC
AAACCGCTCCCCGTCACTGCTCACTCTCTCTACCCTCTCCAGGCTCGCTCTCTCCCCCTTCGCTT
GCCTCACCGCCCGCTCCGCCACCGCCAACCGCCGCTCCAAGTCCTCCCTGTCGTGAGCGTACACC
TGCTGCATCCGCTCCGCCCGCTGCTGGGCCTCCTCCACCTCGCCCTGCTTCATCGCAAGCGCCAT
CTCCGCCTGCTTGACCCGGGCCCGGAGCCGCTCCGCATCGCCAGCCGCCCCCTGGGCACTCAGCT
CGACCTCGGCCGCGGCCACGTTCGCCCGCTTGAGCTCGGCCACCG
Found at i:243593 original size:24 final size:24
Alignment explanation
Indices: 243556--243607 Score: 68
Period size: 24 Copynumber: 2.2 Consensus size: 24
243546 CAAACAGGCG
* * *
243556 GCTTTCCGGTCTGCTTTCCAGCCT
1 GCTTTCCCGCCTGCTTCCCAGCCT
*
243580 GCTTTCCCGCCTGCTTCCCAGTCT
1 GCTTTCCCGCCTGCTTCCCAGCCT
243604 GCTT
1 GCTT
243608 CCCAGGCGTC
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.04, C:0.40, G:0.19, T:0.37
Consensus pattern (24 bp):
GCTTTCCCGCCTGCTTCCCAGCCT
Left flanking sequence: Indices 243056 -- 243555
CGCTCCAACGCCTGCCTAAGCTCTGCGAGCTCCTTCTCGTGCGCCTCGGCCCCCTCCACCCGCCG
CAACAGCGCCAAGTACTGCTCGGAGAGCTCGTGGTTCAGCCGCTGGAGCTGGGCGTTGTCCTCGC
GCACCGTGGCCATCTCCACCTCGAGCCGCCGCACCAGCGCCGCCATCTGGCTGAGCACGTGCACG
TGGCCGGTCTGTGGCCCGTCGTCAAACAGGCGTTGGATGGTGTCGCGGTCCAGCTCCAGGCCCAA
GTCCGACACCCCGGAGACCACCAGGGGCTTGCGAGAACGGGGGACGAAGAGGTCCAGGCGGCTGT
CCGAGACGGTGATATTCTGGTCGGAAGAAACTCTCGCAAAGTCCCGGTCGGATCTCGCAAAGTCC
AGTCTGTCAGAAGACACACGGGCCAACTCGGTCCTGGAGTCGCCTCGGGAGTCTCGGGAGTCTCG
GTCGCCTCGGGAGTCGCGTAAGTGGTCCAGCGACCCAAACAGGCG
Right flanking sequence: Indices 243608 -- 244107
CCCAGGCGTCTTTCGCGGCTCTCCAGGCGGCTTTCCCGGGTCTCTGGGCCCTCGGGAAGCGTGGG
GATGTTGCCCAACGACGGGATCCGCTCAGCAATGGTAAAGGGACGTTCGTTAAACGAGCGGTCAT
TAAACGAGCGGTCACGGTCAGTAAACGAGCGGTCATTAAACAGACGCTCGTTAAAAGAACGCTCG
TTTCCAAACCGCTCCCCGTCACTGCTCACTCTCTCTACCCTCTCCAGGCTCGCTCTCTCCCCCTT
CGCTTGCCTCACCGCCCGCTCCGCCACCGCCAACCGCCGCTCCAAGTCCTCCCTGTCGTGAGCGT
ACACCTGCTGCATCCGCTCCGCCCGCTGCTGGGCCTCCTCCACCTCGCCCTGCTTCATCGCAAGC
GCCATCTCCGCCTGCTTGACCCGGGCCCGGAGCCGCTCCGCATCGCCAGCCGCCCCCTGGGCACT
CAGCTCGACCTCGGCCGCGGCCACGTTCGCCCGCTTGAGCTCGGC
Found at i:243635 original size:21 final size:21
Alignment explanation
Indices: 243609--243651 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
243599 AGTCTGCTTC
* *
243609 CCAGGCGTCTTTCGCGGCTCT
1 CCAGGCGGCTTTCCCGGCTCT
*
243630 CCAGGCGGCTTTCCCGGGTCT
1 CCAGGCGGCTTTCCCGGCTCT
243651 C
1 C
243652 TGGGCCCTCG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.05, C:0.40, G:0.30, T:0.26
Consensus pattern (21 bp):
CCAGGCGGCTTTCCCGGCTCT
Left flanking sequence: Indices 243109 -- 243608
CTCCACCCGCCGCAACAGCGCCAAGTACTGCTCGGAGAGCTCGTGGTTCAGCCGCTGGAGCTGGG
CGTTGTCCTCGCGCACCGTGGCCATCTCCACCTCGAGCCGCCGCACCAGCGCCGCCATCTGGCTG
AGCACGTGCACGTGGCCGGTCTGTGGCCCGTCGTCAAACAGGCGTTGGATGGTGTCGCGGTCCAG
CTCCAGGCCCAAGTCCGACACCCCGGAGACCACCAGGGGCTTGCGAGAACGGGGGACGAAGAGGT
CCAGGCGGCTGTCCGAGACGGTGATATTCTGGTCGGAAGAAACTCTCGCAAAGTCCCGGTCGGAT
CTCGCAAAGTCCAGTCTGTCAGAAGACACACGGGCCAACTCGGTCCTGGAGTCGCCTCGGGAGTC
TCGGGAGTCTCGGTCGCCTCGGGAGTCGCGTAAGTGGTCCAGCGACCCAAACAGGCGGCTTTCCG
GTCTGCTTTCCAGCCTGCTTTCCCGCCTGCTTCCCAGTCTGCTTC
Right flanking sequence: Indices 243652 -- 244151
TGGGCCCTCGGGAAGCGTGGGGATGTTGCCCAACGACGGGATCCGCTCAGCAATGGTAAAGGGAC
GTTCGTTAAACGAGCGGTCATTAAACGAGCGGTCACGGTCAGTAAACGAGCGGTCATTAAACAGA
CGCTCGTTAAAAGAACGCTCGTTTCCAAACCGCTCCCCGTCACTGCTCACTCTCTCTACCCTCTC
CAGGCTCGCTCTCTCCCCCTTCGCTTGCCTCACCGCCCGCTCCGCCACCGCCAACCGCCGCTCCA
AGTCCTCCCTGTCGTGAGCGTACACCTGCTGCATCCGCTCCGCCCGCTGCTGGGCCTCCTCCACC
TCGCCCTGCTTCATCGCAAGCGCCATCTCCGCCTGCTTGACCCGGGCCCGGAGCCGCTCCGCATC
GCCAGCCGCCCCCTGGGCACTCAGCTCGACCTCGGCCGCGGCCACGTTCGCCCGCTTGAGCTCGG
CCACCGCCCGGTTCTTGAGCTTGGTCACGTTCTCGAGCTGGCCCT
Found at i:243757 original size:21 final size:21
Alignment explanation
Indices: 243731--243772 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
243721 GTTAAACGAG
*
243731 CGGTCATTAAACGAGCGGTCA
1 CGGTCAGTAAACGAGCGGTCA
243752 CGGTCAGTAAACGAGCGGTCA
1 CGGTCAGTAAACGAGCGGTCA
243773 TTAAACAGAC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.29, C:0.24, G:0.31, T:0.17
Consensus pattern (21 bp):
CGGTCAGTAAACGAGCGGTCA
Left flanking sequence: Indices 243231 -- 243730
TCTGGCTGAGCACGTGCACGTGGCCGGTCTGTGGCCCGTCGTCAAACAGGCGTTGGATGGTGTCG
CGGTCCAGCTCCAGGCCCAAGTCCGACACCCCGGAGACCACCAGGGGCTTGCGAGAACGGGGGAC
GAAGAGGTCCAGGCGGCTGTCCGAGACGGTGATATTCTGGTCGGAAGAAACTCTCGCAAAGTCCC
GGTCGGATCTCGCAAAGTCCAGTCTGTCAGAAGACACACGGGCCAACTCGGTCCTGGAGTCGCCT
CGGGAGTCTCGGGAGTCTCGGTCGCCTCGGGAGTCGCGTAAGTGGTCCAGCGACCCAAACAGGCG
GCTTTCCGGTCTGCTTTCCAGCCTGCTTTCCCGCCTGCTTCCCAGTCTGCTTCCCAGGCGTCTTT
CGCGGCTCTCCAGGCGGCTTTCCCGGGTCTCTGGGCCCTCGGGAAGCGTGGGGATGTTGCCCAAC
GACGGGATCCGCTCAGCAATGGTAAAGGGACGTTCGTTAAACGAG
Right flanking sequence: Indices 243773 -- 244272
TTAAACAGACGCTCGTTAAAAGAACGCTCGTTTCCAAACCGCTCCCCGTCACTGCTCACTCTCTC
TACCCTCTCCAGGCTCGCTCTCTCCCCCTTCGCTTGCCTCACCGCCCGCTCCGCCACCGCCAACC
GCCGCTCCAAGTCCTCCCTGTCGTGAGCGTACACCTGCTGCATCCGCTCCGCCCGCTGCTGGGCC
TCCTCCACCTCGCCCTGCTTCATCGCAAGCGCCATCTCCGCCTGCTTGACCCGGGCCCGGAGCCG
CTCCGCATCGCCAGCCGCCCCCTGGGCACTCAGCTCGACCTCGGCCGCGGCCACGTTCGCCCGCT
TGAGCTCGGCCACCGCCCGGTTCTTGAGCTTGGTCACGTTCTCGAGCTGGCCCTCCACCGCGTCC
GCCCGCGCCTTCATCCGCACCTCGAGGAGCTTCCAGTTCTCCTGGGCCGCGAGGTACTGGCTCTG
GAGCGCCAGGTGGGCCTCGGAGAGGCGGGCGTACTCCTGGGCGGT
Found at i:243770 original size:15 final size:15
Alignment explanation
Indices: 243722--243751 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
243712 GGGACGTTCG
243722 TTAAACGAGCGGTCA
1 TTAAACGAGCGGTCA
243737 TTAAACGAGCGGTCA
1 TTAAACGAGCGGTCA
243752 CGGTCAGTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.33, C:0.20, G:0.27, T:0.20
Consensus pattern (15 bp):
TTAAACGAGCGGTCA
Left flanking sequence: Indices 243222 -- 243721
GCGCCGCCATCTGGCTGAGCACGTGCACGTGGCCGGTCTGTGGCCCGTCGTCAAACAGGCGTTGG
ATGGTGTCGCGGTCCAGCTCCAGGCCCAAGTCCGACACCCCGGAGACCACCAGGGGCTTGCGAGA
ACGGGGGACGAAGAGGTCCAGGCGGCTGTCCGAGACGGTGATATTCTGGTCGGAAGAAACTCTCG
CAAAGTCCCGGTCGGATCTCGCAAAGTCCAGTCTGTCAGAAGACACACGGGCCAACTCGGTCCTG
GAGTCGCCTCGGGAGTCTCGGGAGTCTCGGTCGCCTCGGGAGTCGCGTAAGTGGTCCAGCGACCC
AAACAGGCGGCTTTCCGGTCTGCTTTCCAGCCTGCTTTCCCGCCTGCTTCCCAGTCTGCTTCCCA
GGCGTCTTTCGCGGCTCTCCAGGCGGCTTTCCCGGGTCTCTGGGCCCTCGGGAAGCGTGGGGATG
TTGCCCAACGACGGGATCCGCTCAGCAATGGTAAAGGGACGTTCG
Right flanking sequence: Indices 243752 -- 244251
CGGTCAGTAAACGAGCGGTCATTAAACAGACGCTCGTTAAAAGAACGCTCGTTTCCAAACCGCTC
CCCGTCACTGCTCACTCTCTCTACCCTCTCCAGGCTCGCTCTCTCCCCCTTCGCTTGCCTCACCG
CCCGCTCCGCCACCGCCAACCGCCGCTCCAAGTCCTCCCTGTCGTGAGCGTACACCTGCTGCATC
CGCTCCGCCCGCTGCTGGGCCTCCTCCACCTCGCCCTGCTTCATCGCAAGCGCCATCTCCGCCTG
CTTGACCCGGGCCCGGAGCCGCTCCGCATCGCCAGCCGCCCCCTGGGCACTCAGCTCGACCTCGG
CCGCGGCCACGTTCGCCCGCTTGAGCTCGGCCACCGCCCGGTTCTTGAGCTTGGTCACGTTCTCG
AGCTGGCCCTCCACCGCGTCCGCCCGCGCCTTCATCCGCACCTCGAGGAGCTTCCAGTTCTCCTG
GGCCGCGAGGTACTGGCTCTGGAGCGCCAGGTGGGCCTCGGAGAG
Found at i:245156 original size:22 final size:21
Alignment explanation
Indices: 245074--245171 Score: 63
Period size: 21 Copynumber: 4.7 Consensus size: 21
245064 CGGTTTGTTT
* **
245074 GGTGGTTTGGGTTGGTTTTTC
1 GGTGGTTTGGGCTGAATTTTC
* * **
245095 AGTGGTTTGAGCTGGGTTTTC
1 GGTGGTTTGGGCTGAATTTTC
* ** * *
245116 TGTGGTTTCAGCT-AGTTTTGT
1 GGTGGTTTGGGCTGAATTTT-C
*
245137 GGTGTTTTGGGCTGAATTTTC
1 GGTGGTTTGGGCTGAATTTTC
245158 GGTGGTTTGGGCTG
1 GGTGGTTTGGGCTG
245172 GTTCCTGCTC
Statistics
Matches: 60, Mismatches: 15, Indels: 4
0.76 0.19 0.05
Matches are distributed among these distances:
20 5 0.08
21 50 0.83
22 5 0.08
ACGTcount: A:0.06, C:0.08, G:0.39, T:0.47
Consensus pattern (21 bp):
GGTGGTTTGGGCTGAATTTTC
Left flanking sequence: Indices 244574 -- 245073
GCACGCGCCTCCAGCGCCTCGCGCTCCACCTGGCGCATCCGCTCGAGCAACTGGTCCACCAGCGC
GAGCCCCGCGAGCTTGAGGGCGTCGTGGAGCTCTGCGAGCTGGCGCTGGCCGTCGTCGGACTTGC
GCAGGTAGTCTGCGAGGGTGTGTTCGAGGCTGGCGTTCTCCTGTTTGAGCCGTTTGATCAGCTCG
TTGAGCTTGAGTTCCTTTTTGCTGAGGACTTCTCCCTCGCGGAGGAGCTCGGCGATCTGCTGGTC
CTTCTGGGCGAGTTTGGTCTCGAGGGCCAGTGGACGGGCCACCTGGGCTTTGAGGGCGGCGAGCT
CCTGGGCGTGGGCGGCCTTGAGGGACGCGAGCTCGCTCTGGGCGGTGATGAGCTGGCGCTGGAGG
CGGGCTATCTTGGGGGTGGGTTCAGGGGTGCCCGTGGGTTGTGGGGGGGCCGCTTTTTCTGTAGT
CTTTTGGGTTTCCAGTGGGCTTGGGCTGGGTTCCGCGGTTTGTTT
Right flanking sequence: Indices 245172 -- 245671
GTTCCTGCTCGGTTTCAGCTGTTTCTTCGGTGGTTTGAGCTGGTTTCGACTCGGTTTCCACTGGC
TTTTTCTCTGTTTCCACGGTTTGCTCAGTTTCAACCACTTTTTCGGACTGTTTTTCGAGTTTCGG
CTCGTCTTCCACCGGGTTTGGGGCTGAATCCACCAGTTCAAGCTCGTTAGCGACGGTTTTAGCCG
GTTCAGCACCGTTTTCGCCGCTGGTTTCGTCGTTTTCGGCCAGAATCTCACCGGTTTCGCTGGCT
TTACCCAGGGTCGTTTCCTCGTGTTTGGGCTCGGAACCCCTTTCCACGGTGGTTTCGCCCTGTGC
CTCGCTTCCAAGGTCAATGAGCGCCTCAGCACCGTCACCTGCAGCGTCCTTCACCGTCTCCACCG
CGTCCTTTACCGTCTCCGCCGCTGCTTCCCCCTCTTTCCCCACTTTTTCACCCTTGGCCTCCTCG
CTCTTCCCGGCGCTACCAGGTCCGTCCCTGTCCTTCGCCTCGTCC
Found at i:245566 original size:21 final size:21
Alignment explanation
Indices: 245540--245583 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
245530 GTCACCTGCA
245540 GCGTCCTTCACCGTCTCCACC
1 GCGTCCTTCACCGTCTCCACC
* *
245561 GCGTCCTTTACCGTCTCCGCC
1 GCGTCCTTCACCGTCTCCACC
245582 GC
1 GC
245584 TGCTTCCCCC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.07, C:0.50, G:0.18, T:0.25
Consensus pattern (21 bp):
GCGTCCTTCACCGTCTCCACC
Left flanking sequence: Indices 245040 -- 245539
CCAGTGGGCTTGGGCTGGGTTCCGCGGTTTGTTTGGTGGTTTGGGTTGGTTTTTCAGTGGTTTGA
GCTGGGTTTTCTGTGGTTTCAGCTAGTTTTGTGGTGTTTTGGGCTGAATTTTCGGTGGTTTGGGC
TGGTTCCTGCTCGGTTTCAGCTGTTTCTTCGGTGGTTTGAGCTGGTTTCGACTCGGTTTCCACTG
GCTTTTTCTCTGTTTCCACGGTTTGCTCAGTTTCAACCACTTTTTCGGACTGTTTTTCGAGTTTC
GGCTCGTCTTCCACCGGGTTTGGGGCTGAATCCACCAGTTCAAGCTCGTTAGCGACGGTTTTAGC
CGGTTCAGCACCGTTTTCGCCGCTGGTTTCGTCGTTTTCGGCCAGAATCTCACCGGTTTCGCTGG
CTTTACCCAGGGTCGTTTCCTCGTGTTTGGGCTCGGAACCCCTTTCCACGGTGGTTTCGCCCTGT
GCCTCGCTTCCAAGGTCAATGAGCGCCTCAGCACCGTCACCTGCA
Right flanking sequence: Indices 245584 -- 246083
TGCTTCCCCCTCTTTCCCCACTTTTTCACCCTTGGCCTCCTCGCTCTTCCCGGCGCTACCAGGTC
CGTCCCTGTCCTTCGCCTCGTCCACCAGGGGGCTCCCCTCGCGCGAGACCAGCCGCGAGCCGCGC
CCCTTGCCCTTGGCTGCCGCAGCGAGCCGCTCCTGGAGCGTCAAACGCTTCCTCTTGGGCTTCTC
CACGGCCGCAGGGGCCGCTTCCAGCGTTTCGGGCGCCTCGGACGCCGTTTCCTTCGAGACAGGCA
CCGAGGACGCATCGTCAATAATAGCCAGAGTCACCACTTCGTCCATTGTGGCGTGTATGGCCCGG
TTGGCGTCGTCGGTGTAGATGGTTCTTAAGGCTTTTCTTAAGGCTACCGTGGAGAAAAGTCGCGT
CGTGCGGCTCAGGCAGGAGGGGAGGAGCTGGAGGGAAGGAAGACGAGGTAGAGGGTTAGAGCGGG
CTAGCGGGATCAGCGGGTGTTTGGGTGTGTCCCGTGACGCCCTGG
Found at i:246383 original size:22 final size:22
Alignment explanation
Indices: 246353--246400 Score: 60
Period size: 22 Copynumber: 2.2 Consensus size: 22
246343 CTCGAGAACG
*
246353 GAGAGAGTAACTGAGAATAGCT
1 GAGAAAGTAACTGAGAATAGCT
* * *
246375 GAGAAAGTAATTGTGAGTAGCT
1 GAGAAAGTAACTGAGAATAGCT
246397 GAGA
1 GAGA
246401 GTGATTGAGA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.40, C:0.06, G:0.33, T:0.21
Consensus pattern (22 bp):
GAGAAAGTAACTGAGAATAGCT
Left flanking sequence: Indices 245853 -- 246352
CATCGTCAATAATAGCCAGAGTCACCACTTCGTCCATTGTGGCGTGTATGGCCCGGTTGGCGTCG
TCGGTGTAGATGGTTCTTAAGGCTTTTCTTAAGGCTACCGTGGAGAAAAGTCGCGTCGTGCGGCT
CAGGCAGGAGGGGAGGAGCTGGAGGGAAGGAAGACGAGGTAGAGGGTTAGAGCGGGCTAGCGGGA
TCAGCGGGTGTTTGGGTGTGTCCCGTGACGCCCTGGAGCGTGGCTTGCGTGTGTTGTGCGTGTCT
TGTGATTCCTGGTCGAGCGTGTCCTGTGATGAGGTCTCGGCCTTTGTCACTGGTGAAACTTGCAG
GACATTCTCTAGAAATAGAGTTGGATACGAAGCGAGCAGGACGTAGAGGCCCGCCCGGGTGGGAT
TCCGGACGGTGGGGAGTCGCGGGGATCATCGCTTGGGGGCTTATGTTAAACGAGTTGTAGTGGTA
ATGGTTGTGAGGCTGAGTGGAGAAGAAGGTGATGACTCGAGAACG
Right flanking sequence: Indices 246401 -- 246900
GTGATTGAGAGTAGCTGAGAGTAACTAAGAAAATAACTGACAGAAGTTGGAGAGGTGACCCTGGC
GAAGGATGACTTATGGAGTGGTTAGGAGATTTTAGAGTCTAACTAAAGCAATTGGAGCAATGAAG
TGATGGCTTTGGGGATTTAAAATTATTCTTTAAAGTGTAGTGATGAAATGTCGATGAAATGTAGC
GATGATATGACGATGAAATGTAGCAAAGAAATGTAGCGATGAAAATAGAGCGGTGAAATGTAGCA
AAGAAATCTACCGATAAAATGAGCGATGAATTGCCTTAGACCCGAGCCAATGGGAGATCTACCAG
CATAAATGCAATGACGAAGCAGCTGCTAACCTCCAACACTCCTGACTAAACCTGCACCGCTTGCG
TATTGAACGTTTGCGTACGGAACGCTTGCGTACGGTAATAATTCGTGTAGCGTTGCTTCATGTAG
CCCGACTAACTGGGCTATGGTATCAGGACAACAATAGGGGTTCAT
Done.