Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: scaffold36
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 449455
ACGTcount: A:0.22, C:0.28, G:0.28, T:0.22
Warning! 1 characters in sequence are not A, C, G, or T
File 1 of 3
Found at i:15814 original size:17 final size:17
Alignment explanation
Indices: 15792--15827 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 17
15782 TTTGTCCGGA
15792 GCTTTGTCATT-TGATTG
1 GCTTTGTC-TTGTGATTG
15809 GCTTTGTCTTGTGATTG
1 GCTTTGTCTTGTGATTG
15826 GC
1 GC
15828 CTCGATTGTG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 2 0.11
17 16 0.89
ACGTcount: A:0.08, C:0.14, G:0.28, T:0.50
Consensus pattern (17 bp):
GCTTTGTCTTGTGATTG
Left flanking sequence: Indices 15292 -- 15791
CCCCGTCAACCTCGGAGAGTTACTGTCGCGGTACCTGAAGCACATCCTGGCGTTGTTGGACTTTA
TTTCGATGATCATCCACACTTTCGAAGAAACGGGCGGCGACTTCTTGTTGCAGAACTCTAAGATT
CCCAAGTTGCTGCCCGAGTTGGTGGCACGTCACCCTGCGTTGTACGAGCAGGTGAAAAAGGTCCA
CCAGCAGGTGCTGCTGTACGAGGACAAGGGGTGGGAGGCCGACGACATTGTGTTGCGGCTCAACC
TGGGGGATGCGTCCAAATCGTCGTTGTACGCCACGGTGATGGCGATGCGGGACAAGTACATCGAT
GACTACGAGTAGTTGGCGTGGTAGATTACGAGTAGCTTATAAACCGTTTAGTTCATTAATACCCC
TTTTTGATTAGTATGAAGTAGCTGGGTGTGCACCCTCAGAAATTGTCGGAGCGGAAATGTGGTTT
GATGGCTTAGGTTACTGCGTCGAGGCTGTCATCGCTTTGTCCGGA
Right flanking sequence: Indices 15828 -- 16327
CTCGATTGTGTTCGATTGGGCTATAATCACACCGGTTTGGTGCTTTTGTCTGGTGCTTAGAATTT
GTCTGAATGGGTCGGCTTTGTCCTGGACAATTACTCAACCATCCAGACAGCACCCACGTCCGCAT
GCTGTGGAAAGCACGTCACTTTGACGTGCTTCTATTATATGACAATTTCAGGCCACTATCTCACC
ACCGCTGTTGCAAATCTCATGCAAATTCCCAACAGGCATTATCGCCTGCGGTGGGCTCACCAAGA
ATTTTGCGTATCGAACGACGTTCCCGGGCGCTTGGCGGGTGTTTTGGAGCGGGCTTGAAACCTTA
ACTTGTGTCACAATAGCCGCCGATCGGTCTTTAATTAACCCCTCTGTTTCATCGCCTACATTGAC
ACATACTTCTGGCGGGCCTCCACGTTAAGCGACGTGCTTCCCGTAAGCGACCCCGTTTCGAGGGA
AGGGTGCCTTCGCGAGGTGGGGGCTCCGCGGCGAGTCGGCTGTCG
Found at i:24604 original size:19 final size:19
Alignment explanation
Indices: 24580--24626 Score: 85
Period size: 19 Copynumber: 2.5 Consensus size: 19
24570 GTAGAAGAGC
*
24580 GAAAGTGGGGGACGAACGA
1 GAAAGTGGGAGACGAACGA
24599 GAAAGTGGGAGACGAACGA
1 GAAAGTGGGAGACGAACGA
24618 GAAAGTGGG
1 GAAAGTGGG
24627 TAATGAGAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 27 1.00
ACGTcount: A:0.38, C:0.09, G:0.47, T:0.06
Consensus pattern (19 bp):
GAAAGTGGGAGACGAACGA
Left flanking sequence: Indices 24080 -- 24579
GTCGTCCGCGACGCTTGCGCTGGGGCGCCAGGGAGGTGGGGCCGTCCTCTAAGAAAGAGTCAACC
ATGGTGGAGAGCACCCCAGACACCTCCTCTGCCCCTGAACCAGCGCTGTTGGTGGCCTCCCGCAG
AAGGCCCAGAAGAGGACTGGGCTCGTATGTGGAGGGCTCCACGGGCGCCTTGAGCCGGAAATTGC
GGGCGTCACCGGTGTCAGAGCCCGCATCGAGGGTGGCTGCGGTGTCGTCCCCTGCCTGAGCGTCT
GTGCGGGTGAACTGGTAGTAGCTCATGGGCTTTGGCAGCACCAGGGGGGTGCCCGCCGGGGTGTT
GGGCCGCAGTTTCTTGGTGCGCCGGGTGTCCTCGAGGATCAATGCCTGGAGGGGATCATCGGTAC
GCTTCCGCTTGACGCGGATGATGTGTGGGATCGGCGCGTGTACGCGTCCAGCCATGGTGGTAGTG
GTTGCGTGATGGTTGAGGTAAAGCCGCACGAGGAGGTAGAAGAGC
Right flanking sequence: Indices 24627 -- 25126
TAATGAGAAAGGGGTGGGTAAGGTCTGCAGTTGACGTTATGACTTCGCCGAGGTGGATCCACTCC
ATCTGAAAAGAGGATATGGGGTTACTTGGCTATTACACTATGCCAGGGGGGTTATCACGACACAG
GTTTGCGAGTGATACGCAAGCAAAGACGATCATATATACGTTAGTCTCACCCCTTAACCTTTTTG
ACTCTACGCATTCCTGGAGTTCTCCCAATTCCCGCTTCTCTCGTGACTATTGCTCGCTGTCTGGC
TGCGAAAACTGGTCACGTAGAGAACCACCTCGTAAAAGAGAATGTTTATAGAAAAACAGAGTGCT
TAAATAGGGAGTGTTCACTCACGTCTTCGCATCATTTAAGTCGTTTTCGTACACATCGTTATGCG
TCAATGTAACTAAAGTTGGCGGATCGACCTAGCCCGCTAGAGTCTACCTTAGAGTCTCAATGATC
TGGAATAAACTCACGTAAACAAAACTCAACAGATTAACCATAAAA
Found at i:28160 original size:12 final size:11
Alignment explanation
Indices: 28143--28183 Score: 57
Period size: 12 Copynumber: 3.6 Consensus size: 11
28133 CTAAATACCG
28143 AGTCGGTTCAGA
1 AGTCGGTTCA-A
28155 AGTCGGTTC-A
1 AGTCGGTTCAA
28165 AGTCGGTTCAA
1 AGTCGGTTCAA
28176 GAGTCGGT
1 -AGTCGGT
28184 CCTACGTGGA
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
10 10 0.37
11 1 0.04
12 16 0.59
ACGTcount: A:0.22, C:0.17, G:0.34, T:0.27
Consensus pattern (11 bp):
AGTCGGTTCAA
Left flanking sequence: Indices 27643 -- 28142
GCTGTGGGTGTCTCGCTATGGGCTGTCGTAGTCCGAGCGCGGAGTCTGTGTCTCCGTGGGCTCTA
TTTTAGGGCAGTTAGCATGTTACATTCCCCCGGCCGACTGCGTGAAGCTAACGCTTTTGTGGTGT
TGACGACACATGGTTGACGGGTGGTGCGGGGAGTCTCCACAACAAGGCGCAAACGGTTGTTTGTT
TACTATGCCCGTTCCCGATCTCCGGGATCCCGCCTTAGCTCTAGCAGGTAAACACTCTGGTGGCT
CGGCAAGGGAAAAGCCGAGCGAACAACAAACCGTAACCACTAGACAAACGCATAACCATTAGCGG
AAAAGTGCGTGATAGTACCGACCCAGCTTACGATATCAAACCACACTACTGAAGAAATATCAACG
TTGACCGCTCTCGAACTGTGTGGGCAATTAAGGTAATCTCCGCAATCTCATAACCTTAACCGCCG
ATACCGAACCGTAGGTGATAAACGCGCAGCTCAACCTAAATACCG
Right flanking sequence: Indices 28184 -- 28683
CCTACGTGGAAAAAGCCTCGGCTTGAGCCATTTTGCTCGTGTACCTTGTGGGAACCTTTTTTCTT
CCACTACCCTCGTGTCTTCCTTTCTCCTCTCGATTCCTCCCACCTCTTTTCGCGGTGCGGCGACA
GCACCTGAGGTGCATGTCCTCCTCCGACGTTTTAGACGGCACCTCCCAGGTGTCCGCGGTAGCTC
TCCAGCTCCTTCTCCAGGAGACAGTGCCGCTATCAATACGGGTGGCCCATAAGCTTGGGCACCAG
CAGAAATCCGCAACCGAGCTTGAGGAAACCACCATCGACAAACCGCTTCTGGACGCGGTGCCCGA
CGACTTGCCAGGCACCGTTGGCATTTACGACGCACCAGAACTCGGGAGTGATGAGGTGCTGGTAC
GGCTTGAACTCTACGGGTACCAGGTCGGGTTGCTGTTGGCAGAGGTTCTTTTGTATAAGAACAAC
CACATCGCCCACACCACCACCAAGATCGACGATATCTTGGACATC
Found at i:28169 original size:10 final size:10
Alignment explanation
Indices: 28143--28176 Score: 50
Period size: 10 Copynumber: 3.2 Consensus size: 10
28133 CTAAATACCG
28143 AGTCGGTTCAGA
1 AGTCGGTTC--A
28155 AGTCGGTTCA
1 AGTCGGTTCA
28165 AGTCGGTTCA
1 AGTCGGTTCA
28175 AG
1 AG
28177 AGTCGGTCCT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
10 13 0.59
12 9 0.41
ACGTcount: A:0.24, C:0.18, G:0.32, T:0.26
Consensus pattern (10 bp):
AGTCGGTTCA
Left flanking sequence: Indices 27643 -- 28142
GCTGTGGGTGTCTCGCTATGGGCTGTCGTAGTCCGAGCGCGGAGTCTGTGTCTCCGTGGGCTCTA
TTTTAGGGCAGTTAGCATGTTACATTCCCCCGGCCGACTGCGTGAAGCTAACGCTTTTGTGGTGT
TGACGACACATGGTTGACGGGTGGTGCGGGGAGTCTCCACAACAAGGCGCAAACGGTTGTTTGTT
TACTATGCCCGTTCCCGATCTCCGGGATCCCGCCTTAGCTCTAGCAGGTAAACACTCTGGTGGCT
CGGCAAGGGAAAAGCCGAGCGAACAACAAACCGTAACCACTAGACAAACGCATAACCATTAGCGG
AAAAGTGCGTGATAGTACCGACCCAGCTTACGATATCAAACCACACTACTGAAGAAATATCAACG
TTGACCGCTCTCGAACTGTGTGGGCAATTAAGGTAATCTCCGCAATCTCATAACCTTAACCGCCG
ATACCGAACCGTAGGTGATAAACGCGCAGCTCAACCTAAATACCG
Right flanking sequence: Indices 28177 -- 28676
AGTCGGTCCTACGTGGAAAAAGCCTCGGCTTGAGCCATTTTGCTCGTGTACCTTGTGGGAACCTT
TTTTCTTCCACTACCCTCGTGTCTTCCTTTCTCCTCTCGATTCCTCCCACCTCTTTTCGCGGTGC
GGCGACAGCACCTGAGGTGCATGTCCTCCTCCGACGTTTTAGACGGCACCTCCCAGGTGTCCGCG
GTAGCTCTCCAGCTCCTTCTCCAGGAGACAGTGCCGCTATCAATACGGGTGGCCCATAAGCTTGG
GCACCAGCAGAAATCCGCAACCGAGCTTGAGGAAACCACCATCGACAAACCGCTTCTGGACGCGG
TGCCCGACGACTTGCCAGGCACCGTTGGCATTTACGACGCACCAGAACTCGGGAGTGATGAGGTG
CTGGTACGGCTTGAACTCTACGGGTACCAGGTCGGGTTGCTGTTGGCAGAGGTTCTTTTGTATAA
GAACAACCACATCGCCCACACCACCACCAAGATCGACGATATCTT
Found at i:43807 original size:16 final size:16
Alignment explanation
Indices: 43786--43822 Score: 74
Period size: 16 Copynumber: 2.3 Consensus size: 16
43776 GGATCAGTTT
43786 GAGAGTGACATGTGTA
1 GAGAGTGACATGTGTA
43802 GAGAGTGACATGTGTA
1 GAGAGTGACATGTGTA
43818 GAGAG
1 GAGAG
43823 GCAACTATGA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.32, C:0.05, G:0.41, T:0.22
Consensus pattern (16 bp):
GAGAGTGACATGTGTA
Left flanking sequence: Indices 43286 -- 43785
GGCGCGGTCGTTCGAGGAGAAGGTGCAGGCCACGTCGTTTGCCGAGGCCACCAAGATGCAGAAGC
GCATCAAGAACGACCCCGTGTTGACCAAGAAGATCGCCGAGGTGATGCGCGAGTCGGGGGTCCAG
TACTAGGCCGTGTGTAGGCCATTGTATATACGTAACACAGATGAAAGTGTAAAGAGCAAGTAGTG
AGGTGAGGAGGCTGGAATGTGACTGTGGTGGGTTAGAGTGACACATCGGAGGTGATTTGAGCGTT
GTCCAAGACACTTAGTGCCGCTTAGTAGCGCAGTTCATTTGGAGGTTGAACTGTAGCCAGAGCAT
ACTAAAACTCACAATGCTTCTATGTTCCGCCTTACGATGGTGTGCCTGGTTCCCCGCGTTTCAAT
GCAATGGCCCCGCCTAAGTTACGGCTGCAAATGTCACAGCTTGCCTATATTGCCTATTCGGGTCG
TGAAAGGTACACAGCACTCGAGGCATGGGATGGGGGGATCAGTTT
Right flanking sequence: Indices 43823 -- 44322
GCAACTATGAGTGGGTAGTCTGGAGAGAATTGTGAATGGAGTTATTCATTTTCTAGTACAAATGT
TTCACATTGAAGTGGACTTTGCCTCAGTCTATACAATGGTCTATACCAGTATTTCAAGACTGCTC
TCTACGCGGTTACCCGATTAGGTTCGCAAAGGTTCCGCCAGGGCCTACTGGCAAATGTGATACCA
CACCTATCCACCTCCACAGCGATCACTTAGTCGATTCGGCCGCCAAAGGACACCACAATTCAACT
ATAAAACTGCCTCCATTCGTGTTCAAAACACCATCAATGAAGTTCCTCACCATCTCTGCTGCCTT
GGCTGCTACCGCTGTCGCCGAAAACGTCGTCAACTCCTATGTCCTCAAGGAGGGCGAGCTCGCCT
TCAAGGCCCAGAACGACAAGGGTGAGACGTCGATCGTAATTGTGTCTGCTGCCGAGGCCAACCAG
GTCGAAGGAGAGAACGTCAAGCGCTGGCTGTGGTTGGACTGGAGA
Found at i:53164 original size:27 final size:27
Alignment explanation
Indices: 53134--53207 Score: 82
Period size: 27 Copynumber: 2.9 Consensus size: 27
53124 GCTAGAAGTC
* * *
53134 GTGGTACACGGGGTGGTGGTGGTGGTT
1 GTGGTACAAGGCGTCGTGGTGGTGGTT
*
53161 GTGGTGCAAGGCGTCGTGGTGGTGGTT
1 GTGGTACAAGGCGTCGTGGTGGTGGTT
*
53188 GT-G--CAAGGCGTCGTCGTGGT
1 GTGGTACAAGGCGTCGTGGTGGT
53208 ACTGGTCGTC
Statistics
Matches: 42, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
24 16 0.38
26 1 0.02
27 25 0.60
ACGTcount: A:0.08, C:0.12, G:0.51, T:0.28
Consensus pattern (27 bp):
GTGGTACAAGGCGTCGTGGTGGTGGTT
Left flanking sequence: Indices 52634 -- 53133
TGGTATGATGGGTCACAGGAGGCGGAGGTGGTGGGGTCGTTGTCAGCTGCGTAGAAACTGGAGGC
GGCGGCGGCTGAGTACACGTGGTGCACGTAGTCACCGTAGTCTTGGTTGTCTTTGTAGTGGTCGA
CGGCGGCGGCGGCGGCGGTGTGGTGGACTCAGGAGGACACGGGGTAGTGGTTGGGGGAGGCGGCG
GGGAGCACGTAGTGCAAGTGGTCACCGTGGTGTGGGTGGTCTTGGTGGTGGTTGGCGGCGGCGGC
GGCGGGGTGCAAGTGGTGCACGTAGTCACCGTGGTGTGGGTGGTTCTGGTCGTAGTCTCAGTACT
AATCAGTGGAGTACACGACGTGGTAGTGGACGACGGAACCAGAGAGGTGGTACACGGGGTGGTCA
GTACAGAGCTCAGCGTCGTGGATGGAGTCGGCGTTACCGACGTCGTACACGGCGTAGTGCTGCTT
GTCGTCGTAGACGGGGTACTGGTGCACGGAGTTGTGCTAGAAGTC
Right flanking sequence: Indices 53208 -- 53707
ACTGGTCGTCTTCAGAGTCGTCGTGCACGGAATAGTAGTAGTGCTGGTCGTCTTCAGAGTTGTCG
TGCACGGCGTCGTCGTGGTACTGGTCGTCTTCAGAGTCGTAGTGCACGGAATAGTCGTGGTGCTA
GTCGTCTTCAGAGTCGTCGTACAAGGAGTAGTCGTCGTGCTCGTAGTCTTCAGAGTCGTGGTGCA
CGGAGTAGTCGTGGTGCTCGTCGTCTTCAGCGTCGTAGTACAAGGGGTGGTGATGGTGGTGGTTG
TCGTCCAGGGAGTCGTCGTCGTGGAAGTAGACGGGGTACACGTGGGGCACAGTGTCGTAGGCGTC
GGTGTAGTAGTACAGGGCGTCGTCAGCGAGGTTGTGGTCGTGCATGGCGTCGTGGTGGTGCTCGT
AGACGGGGTGCAAGTCGGGCACAGCGTTGTAGGCGTAGTGCACGAGGTGGTGGTGGTCGTCGTAC
AAGGCGTAGTGGTGGTGGTTGTAGTGCAAGGCGTCGTCGTCGTCG
Found at i:53191 original size:24 final size:24
Alignment explanation
Indices: 53152--53207 Score: 85
Period size: 24 Copynumber: 2.3 Consensus size: 24
53142 CGGGGTGGTG
*
53152 GTGGTGGTTGTGGTGCAAGGCGTC
1 GTGGTGGTGGTGGTGCAAGGCGTC
*
53176 GTGGTGGTGGTTGTGCAAGGCGTC
1 GTGGTGGTGGTGGTGCAAGGCGTC
*
53200 GTCGTGGT
1 GTGGTGGT
53208 ACTGGTCGTC
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 29 1.00
ACGTcount: A:0.07, C:0.12, G:0.50, T:0.30
Consensus pattern (24 bp):
GTGGTGGTGGTGGTGCAAGGCGTC
Left flanking sequence: Indices 52652 -- 53151
GAGGCGGAGGTGGTGGGGTCGTTGTCAGCTGCGTAGAAACTGGAGGCGGCGGCGGCTGAGTACAC
GTGGTGCACGTAGTCACCGTAGTCTTGGTTGTCTTTGTAGTGGTCGACGGCGGCGGCGGCGGCGG
TGTGGTGGACTCAGGAGGACACGGGGTAGTGGTTGGGGGAGGCGGCGGGGAGCACGTAGTGCAAG
TGGTCACCGTGGTGTGGGTGGTCTTGGTGGTGGTTGGCGGCGGCGGCGGCGGGGTGCAAGTGGTG
CACGTAGTCACCGTGGTGTGGGTGGTTCTGGTCGTAGTCTCAGTACTAATCAGTGGAGTACACGA
CGTGGTAGTGGACGACGGAACCAGAGAGGTGGTACACGGGGTGGTCAGTACAGAGCTCAGCGTCG
TGGATGGAGTCGGCGTTACCGACGTCGTACACGGCGTAGTGCTGCTTGTCGTCGTAGACGGGGTA
CTGGTGCACGGAGTTGTGCTAGAAGTCGTGGTACACGGGGTGGTG
Right flanking sequence: Indices 53208 -- 53707
ACTGGTCGTCTTCAGAGTCGTCGTGCACGGAATAGTAGTAGTGCTGGTCGTCTTCAGAGTTGTCG
TGCACGGCGTCGTCGTGGTACTGGTCGTCTTCAGAGTCGTAGTGCACGGAATAGTCGTGGTGCTA
GTCGTCTTCAGAGTCGTCGTACAAGGAGTAGTCGTCGTGCTCGTAGTCTTCAGAGTCGTGGTGCA
CGGAGTAGTCGTGGTGCTCGTCGTCTTCAGCGTCGTAGTACAAGGGGTGGTGATGGTGGTGGTTG
TCGTCCAGGGAGTCGTCGTCGTGGAAGTAGACGGGGTACACGTGGGGCACAGTGTCGTAGGCGTC
GGTGTAGTAGTACAGGGCGTCGTCAGCGAGGTTGTGGTCGTGCATGGCGTCGTGGTGGTGCTCGT
AGACGGGGTGCAAGTCGGGCACAGCGTTGTAGGCGTAGTGCACGAGGTGGTGGTGGTCGTCGTAC
AAGGCGTAGTGGTGGTGGTTGTAGTGCAAGGCGTCGTCGTCGTCG
Found at i:53234 original size:42 final size:42
Alignment explanation
Indices: 53200--53438 Score: 307
Period size: 42 Copynumber: 5.7 Consensus size: 42
53190 GCAAGGCGTC
* *
53200 GTCGTGGTACTGGTCGTCTTCAGAGTCGTCGTGCACGGAATA
1 GTCGTGGTGCTGGTCGTCTTCAGAGTCGTCGTGCACGGAGTA
* * * * *
53242 GTAGTAGTGCTGGTCGTCTTCAGAGTTGTCGTGCACGGCGTC
1 GTCGTGGTGCTGGTCGTCTTCAGAGTCGTCGTGCACGGAGTA
* * *
53284 GTCGTGGTACTGGTCGTCTTCAGAGTCGTAGTGCACGGAATA
1 GTCGTGGTGCTGGTCGTCTTCAGAGTCGTCGTGCACGGAGTA
* * *
53326 GTCGTGGTGCTAGTCGTCTTCAGAGTCGTCGTACAAGGAGTA
1 GTCGTGGTGCTGGTCGTCTTCAGAGTCGTCGTGCACGGAGTA
* * * *
53368 GTCGTCGTGCTCGTAGTCTTCAGAGTCGTGGTGCACGGAGTA
1 GTCGTGGTGCTGGTCGTCTTCAGAGTCGTCGTGCACGGAGTA
* *
53410 GTCGTGGTGCTCGTCGTCTTCAGCGTCGT
1 GTCGTGGTGCTGGTCGTCTTCAGAGTCGT
53439 AGTACAAGGG
Statistics
Matches: 167, Mismatches: 30, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
42 167 1.00
ACGTcount: A:0.15, C:0.21, G:0.34, T:0.30
Consensus pattern (42 bp):
GTCGTGGTGCTGGTCGTCTTCAGAGTCGTCGTGCACGGAGTA
Left flanking sequence: Indices 52700 -- 53199
GCGGCGGCTGAGTACACGTGGTGCACGTAGTCACCGTAGTCTTGGTTGTCTTTGTAGTGGTCGAC
GGCGGCGGCGGCGGCGGTGTGGTGGACTCAGGAGGACACGGGGTAGTGGTTGGGGGAGGCGGCGG
GGAGCACGTAGTGCAAGTGGTCACCGTGGTGTGGGTGGTCTTGGTGGTGGTTGGCGGCGGCGGCG
GCGGGGTGCAAGTGGTGCACGTAGTCACCGTGGTGTGGGTGGTTCTGGTCGTAGTCTCAGTACTA
ATCAGTGGAGTACACGACGTGGTAGTGGACGACGGAACCAGAGAGGTGGTACACGGGGTGGTCAG
TACAGAGCTCAGCGTCGTGGATGGAGTCGGCGTTACCGACGTCGTACACGGCGTAGTGCTGCTTG
TCGTCGTAGACGGGGTACTGGTGCACGGAGTTGTGCTAGAAGTCGTGGTACACGGGGTGGTGGTG
GTGGTTGTGGTGCAAGGCGTCGTGGTGGTGGTTGTGCAAGGCGTC
Right flanking sequence: Indices 53439 -- 53938
AGTACAAGGGGTGGTGATGGTGGTGGTTGTCGTCCAGGGAGTCGTCGTCGTGGAAGTAGACGGGG
TACACGTGGGGCACAGTGTCGTAGGCGTCGGTGTAGTAGTACAGGGCGTCGTCAGCGAGGTTGTG
GTCGTGCATGGCGTCGTGGTGGTGCTCGTAGACGGGGTGCAAGTCGGGCACAGCGTTGTAGGCGT
AGTGCACGAGGTGGTGGTGGTCGTCGTACAAGGCGTAGTGGTGGTGGTTGTAGTGCAAGGCGTCG
TCGTCGTCGTTGTGGTACAAGGCGTAGTAGTGGTGGTTGTAGTACAAGGCGTCGTCGTCGTCGTC
GTGGTACCAGGTGTAGTTGTAGTGCTCGTCGTTGTTGAAGTGGACGGGGTGCACGTAGGACACAG
AGTGGTGGGGGTTGTGCACGGGGTTGTCGTTGTAGTCGACAGCGTAGTCGTGCACGGGGTAGTAG
TCGTCGAAGTCGAAGGAGTGCAAGTAGGGCACAGCGTCGTCGGCG
Found at i:53293 original size:84 final size:84
Alignment explanation
Indices: 53188--53447 Score: 349
Period size: 84 Copynumber: 3.1 Consensus size: 84
53178 GGTGGTGGTT
* * *
53188 GTGCAAGGCGTCGTCGTGGTACTGGTCGTCTTCAGAGTCGTCGTGCACGGAATAGTAGTAGTGCT
1 GTGCAAGGCGTCGTCGTGGTACTGGTCGTCTTCAGAGTCGTAGTGCACGGAATAGTCGTGGTGCT
* *
53253 GGTCGTCTTCAGAGTTGTC
66 AGTCGTCTTCAGAGTCGTC
*
53272 GTGCACGGCGTCGTCGTGGTACTGGTCGTCTTCAGAGTCGTAGTGCACGGAATAGTCGTGGTGCT
1 GTGCAAGGCGTCGTCGTGGTACTGGTCGTCTTCAGAGTCGTAGTGCACGGAATAGTCGTGGTGCT
53337 AGTCGTCTTCAGAGTCGTC
66 AGTCGTCTTCAGAGTCGTC
* * * * * * * * *
53356 GTACAAGGAGTAGTCGTCGTGCTCGTAGTCTTCAGAGTCGTGGTGCACGGAGTAGTCGTGGTGCT
1 GTGCAAGGCGTCGTCGTGGTACTGGTCGTCTTCAGAGTCGTAGTGCACGGAATAGTCGTGGTGCT
* * *
53421 CGTCGTCTTCAGCGTCGTA
66 AGTCGTCTTCAGAGTCGTC
*
53440 GTACAAGG
1 GTGCAAGG
53448 GGTGGTGATG
Statistics
Matches: 157, Mismatches: 19, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
84 157 1.00
ACGTcount: A:0.16, C:0.21, G:0.35, T:0.28
Consensus pattern (84 bp):
GTGCAAGGCGTCGTCGTGGTACTGGTCGTCTTCAGAGTCGTAGTGCACGGAATAGTCGTGGTGCT
AGTCGTCTTCAGAGTCGTC
Left flanking sequence: Indices 52688 -- 53187
AAACTGGAGGCGGCGGCGGCTGAGTACACGTGGTGCACGTAGTCACCGTAGTCTTGGTTGTCTTT
GTAGTGGTCGACGGCGGCGGCGGCGGCGGTGTGGTGGACTCAGGAGGACACGGGGTAGTGGTTGG
GGGAGGCGGCGGGGAGCACGTAGTGCAAGTGGTCACCGTGGTGTGGGTGGTCTTGGTGGTGGTTG
GCGGCGGCGGCGGCGGGGTGCAAGTGGTGCACGTAGTCACCGTGGTGTGGGTGGTTCTGGTCGTA
GTCTCAGTACTAATCAGTGGAGTACACGACGTGGTAGTGGACGACGGAACCAGAGAGGTGGTACA
CGGGGTGGTCAGTACAGAGCTCAGCGTCGTGGATGGAGTCGGCGTTACCGACGTCGTACACGGCG
TAGTGCTGCTTGTCGTCGTAGACGGGGTACTGGTGCACGGAGTTGTGCTAGAAGTCGTGGTACAC
GGGGTGGTGGTGGTGGTTGTGGTGCAAGGCGTCGTGGTGGTGGTT
Right flanking sequence: Indices 53448 -- 53947
GGTGGTGATGGTGGTGGTTGTCGTCCAGGGAGTCGTCGTCGTGGAAGTAGACGGGGTACACGTGG
GGCACAGTGTCGTAGGCGTCGGTGTAGTAGTACAGGGCGTCGTCAGCGAGGTTGTGGTCGTGCAT
GGCGTCGTGGTGGTGCTCGTAGACGGGGTGCAAGTCGGGCACAGCGTTGTAGGCGTAGTGCACGA
GGTGGTGGTGGTCGTCGTACAAGGCGTAGTGGTGGTGGTTGTAGTGCAAGGCGTCGTCGTCGTCG
TTGTGGTACAAGGCGTAGTAGTGGTGGTTGTAGTACAAGGCGTCGTCGTCGTCGTCGTGGTACCA
GGTGTAGTTGTAGTGCTCGTCGTTGTTGAAGTGGACGGGGTGCACGTAGGACACAGAGTGGTGGG
GGTTGTGCACGGGGTTGTCGTTGTAGTCGACAGCGTAGTCGTGCACGGGGTAGTAGTCGTCGAAG
TCGAAGGAGTGCAAGTAGGGCACAGCGTCGTCGGCGTCGTACAAG
Found at i:53332 original size:126 final size:126
Alignment explanation
Indices: 53200--53441 Score: 340
Period size: 126 Copynumber: 1.9 Consensus size: 126
53190 GCAAGGCGTC
* * * * *
53200 GTCGTGGTACTGGTCGTCTTCAGAGTCGTCGTGCACGGAATAGTAGTAGTGCTGGTCGTCTTCAG
1 GTCGTGGTACTAGTCGTCTTCAGAGTCGTCGTACAAGGAATAGTAGTAGTGCTCGTAGTCTTCAG
* * * *
53265 AGTTGTCGTGCACGGCGTCGTCGTGGTACTGGTCGTCTTCAGAGTCGTAGTGCACGGAATA
66 AGTCGTCGTGCACGGAGTAGTCGTGGTACTCGTCGTCTTCAGAGTCGTAGTGCACGGAATA
* * * *
53326 GTCGTGGTGCTAGTCGTCTTCAGAGTCGTCGTACAAGGAGTAGTCGTCGTGCTCGTAGTCTTCAG
1 GTCGTGGTACTAGTCGTCTTCAGAGTCGTCGTACAAGGAATAGTAGTAGTGCTCGTAGTCTTCAG
* * *
53391 AGTCGTGGTGCACGGAGTAGTCGTGGTGCTCGTCGTCTTCAGCGTCGTAGT
66 AGTCGTCGTGCACGGAGTAGTCGTGGTACTCGTCGTCTTCAGAGTCGTAGT
53442 ACAAGGGGTG
Statistics
Matches: 100, Mismatches: 16, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
126 100 1.00
ACGTcount: A:0.15, C:0.21, G:0.34, T:0.30
Consensus pattern (126 bp):
GTCGTGGTACTAGTCGTCTTCAGAGTCGTCGTACAAGGAATAGTAGTAGTGCTCGTAGTCTTCAG
AGTCGTCGTGCACGGAGTAGTCGTGGTACTCGTCGTCTTCAGAGTCGTAGTGCACGGAATA
Left flanking sequence: Indices 52700 -- 53199
GCGGCGGCTGAGTACACGTGGTGCACGTAGTCACCGTAGTCTTGGTTGTCTTTGTAGTGGTCGAC
GGCGGCGGCGGCGGCGGTGTGGTGGACTCAGGAGGACACGGGGTAGTGGTTGGGGGAGGCGGCGG
GGAGCACGTAGTGCAAGTGGTCACCGTGGTGTGGGTGGTCTTGGTGGTGGTTGGCGGCGGCGGCG
GCGGGGTGCAAGTGGTGCACGTAGTCACCGTGGTGTGGGTGGTTCTGGTCGTAGTCTCAGTACTA
ATCAGTGGAGTACACGACGTGGTAGTGGACGACGGAACCAGAGAGGTGGTACACGGGGTGGTCAG
TACAGAGCTCAGCGTCGTGGATGGAGTCGGCGTTACCGACGTCGTACACGGCGTAGTGCTGCTTG
TCGTCGTAGACGGGGTACTGGTGCACGGAGTTGTGCTAGAAGTCGTGGTACACGGGGTGGTGGTG
GTGGTTGTGGTGCAAGGCGTCGTGGTGGTGGTTGTGCAAGGCGTC
Right flanking sequence: Indices 53442 -- 53941
ACAAGGGGTGGTGATGGTGGTGGTTGTCGTCCAGGGAGTCGTCGTCGTGGAAGTAGACGGGGTAC
ACGTGGGGCACAGTGTCGTAGGCGTCGGTGTAGTAGTACAGGGCGTCGTCAGCGAGGTTGTGGTC
GTGCATGGCGTCGTGGTGGTGCTCGTAGACGGGGTGCAAGTCGGGCACAGCGTTGTAGGCGTAGT
GCACGAGGTGGTGGTGGTCGTCGTACAAGGCGTAGTGGTGGTGGTTGTAGTGCAAGGCGTCGTCG
TCGTCGTTGTGGTACAAGGCGTAGTAGTGGTGGTTGTAGTACAAGGCGTCGTCGTCGTCGTCGTG
GTACCAGGTGTAGTTGTAGTGCTCGTCGTTGTTGAAGTGGACGGGGTGCACGTAGGACACAGAGT
GGTGGGGGTTGTGCACGGGGTTGTCGTTGTAGTCGACAGCGTAGTCGTGCACGGGGTAGTAGTCG
TCGAAGTCGAAGGAGTGCAAGTAGGGCACAGCGTCGTCGGCGTCG
Found at i:53674 original size:27 final size:27
Alignment explanation
Indices: 53647--53780 Score: 115
Period size: 27 Copynumber: 5.0 Consensus size: 27
53637 GCACGAGGTG
* *
53647 GTGGTGGTCGTCGTACAAGGCGTAGTG
1 GTGGTGGTCGTAGTACAAGGCGTAGTC
* * *
53674 GTGGTGGTTGTAGTGCAAGGCGTCGTC
1 GTGGTGGTCGTAGTACAAGGCGTAGTC
* * * * *
53701 GTCGTCGTTGTGGTACAAGGCGTAGTA
1 GTGGTGGTCGTAGTACAAGGCGTAGTC
* *
53728 GTGGTGGTTGTAGTACAAGGCGTCGTC
1 GTGGTGGTCGTAGTACAAGGCGTAGTC
* * * * *
53755 GTCGTCGTCGTGGTACCAGGTGTAGT
1 GTGGTGGTCGTAGTACAAGGCGTAGT
53781 TGTAGTGCTC
Statistics
Matches: 84, Mismatches: 23, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
27 84 1.00
ACGTcount: A:0.14, C:0.16, G:0.41, T:0.29
Consensus pattern (27 bp):
GTGGTGGTCGTAGTACAAGGCGTAGTC
Left flanking sequence: Indices 53147 -- 53646
TGGTGGTGGTGGTTGTGGTGCAAGGCGTCGTGGTGGTGGTTGTGCAAGGCGTCGTCGTGGTACTG
GTCGTCTTCAGAGTCGTCGTGCACGGAATAGTAGTAGTGCTGGTCGTCTTCAGAGTTGTCGTGCA
CGGCGTCGTCGTGGTACTGGTCGTCTTCAGAGTCGTAGTGCACGGAATAGTCGTGGTGCTAGTCG
TCTTCAGAGTCGTCGTACAAGGAGTAGTCGTCGTGCTCGTAGTCTTCAGAGTCGTGGTGCACGGA
GTAGTCGTGGTGCTCGTCGTCTTCAGCGTCGTAGTACAAGGGGTGGTGATGGTGGTGGTTGTCGT
CCAGGGAGTCGTCGTCGTGGAAGTAGACGGGGTACACGTGGGGCACAGTGTCGTAGGCGTCGGTG
TAGTAGTACAGGGCGTCGTCAGCGAGGTTGTGGTCGTGCATGGCGTCGTGGTGGTGCTCGTAGAC
GGGGTGCAAGTCGGGCACAGCGTTGTAGGCGTAGTGCACGAGGTG
Right flanking sequence: Indices 53781 -- 54280
TGTAGTGCTCGTCGTTGTTGAAGTGGACGGGGTGCACGTAGGACACAGAGTGGTGGGGGTTGTGC
ACGGGGTTGTCGTTGTAGTCGACAGCGTAGTCGTGCACGGGGTAGTAGTCGTCGAAGTCGAAGGA
GTGCAAGTAGGGCACAGCGTCGTCGGCGTCGTACAAGGCGTAGTGGTGCTCAGCGTGGTGGTGCA
CGGCGTAGTGGTACTCAGAGTAGTAGTGGTGCACGGAGTAGTGGTGCTCAGAGTCGTAGTGGTGC
ACGGAGTCGTTGAGCTAGTGGTCCACAGAGTCGTGGTGCTAGTCAGAGGCGTACACGTAGGACAC
AGAGTAGTAGGGGTGGTACAAGGAGTCGTCGTACTCAGAGTCGTCGTCGTACAAGGAGTAGTAGT
GCTCAGAGTCGTCGTCGTGCAGGGAGTAGTCGTGCTCAGAGTCGTCGTCGTGCAAGGAGTAGTCG
TCGTGCTCAGCGTCGTGGTGCAGATGGTGCTGGTGGTCGACGGTG
Found at i:53725 original size:54 final size:54
Alignment explanation
Indices: 53653--53780 Score: 202
Period size: 54 Copynumber: 2.4 Consensus size: 54
53643 GGTGGTGGTG
* * *
53653 GTCGTCGTACAAGGCGTAGTGGTGGTGGTTGTAGTGCAAGGCGTCGTCGTCGTC
1 GTCGTGGTACAAGGCGTAGTAGTGGTGGTTGTAGTACAAGGCGTCGTCGTCGTC
*
53707 GTTGTGGTACAAGGCGTAGTAGTGGTGGTTGTAGTACAAGGCGTCGTCGTCGTC
1 GTCGTGGTACAAGGCGTAGTAGTGGTGGTTGTAGTACAAGGCGTCGTCGTCGTC
* *
53761 GTCGTGGTACCAGGTGTAGT
1 GTCGTGGTACAAGGCGTAGT
53781 TGTAGTGCTC
Statistics
Matches: 67, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
54 67 1.00
ACGTcount: A:0.15, C:0.16, G:0.40, T:0.29
Consensus pattern (54 bp):
GTCGTGGTACAAGGCGTAGTAGTGGTGGTTGTAGTACAAGGCGTCGTCGTCGTC
Left flanking sequence: Indices 53153 -- 53652
TGGTGGTTGTGGTGCAAGGCGTCGTGGTGGTGGTTGTGCAAGGCGTCGTCGTGGTACTGGTCGTC
TTCAGAGTCGTCGTGCACGGAATAGTAGTAGTGCTGGTCGTCTTCAGAGTTGTCGTGCACGGCGT
CGTCGTGGTACTGGTCGTCTTCAGAGTCGTAGTGCACGGAATAGTCGTGGTGCTAGTCGTCTTCA
GAGTCGTCGTACAAGGAGTAGTCGTCGTGCTCGTAGTCTTCAGAGTCGTGGTGCACGGAGTAGTC
GTGGTGCTCGTCGTCTTCAGCGTCGTAGTACAAGGGGTGGTGATGGTGGTGGTTGTCGTCCAGGG
AGTCGTCGTCGTGGAAGTAGACGGGGTACACGTGGGGCACAGTGTCGTAGGCGTCGGTGTAGTAG
TACAGGGCGTCGTCAGCGAGGTTGTGGTCGTGCATGGCGTCGTGGTGGTGCTCGTAGACGGGGTG
CAAGTCGGGCACAGCGTTGTAGGCGTAGTGCACGAGGTGGTGGTG
Right flanking sequence: Indices 53781 -- 54280
TGTAGTGCTCGTCGTTGTTGAAGTGGACGGGGTGCACGTAGGACACAGAGTGGTGGGGGTTGTGC
ACGGGGTTGTCGTTGTAGTCGACAGCGTAGTCGTGCACGGGGTAGTAGTCGTCGAAGTCGAAGGA
GTGCAAGTAGGGCACAGCGTCGTCGGCGTCGTACAAGGCGTAGTGGTGCTCAGCGTGGTGGTGCA
CGGCGTAGTGGTACTCAGAGTAGTAGTGGTGCACGGAGTAGTGGTGCTCAGAGTCGTAGTGGTGC
ACGGAGTCGTTGAGCTAGTGGTCCACAGAGTCGTGGTGCTAGTCAGAGGCGTACACGTAGGACAC
AGAGTAGTAGGGGTGGTACAAGGAGTCGTCGTACTCAGAGTCGTCGTCGTACAAGGAGTAGTAGT
GCTCAGAGTCGTCGTCGTGCAGGGAGTAGTCGTGCTCAGAGTCGTCGTCGTGCAAGGAGTAGTCG
TCGTGCTCAGCGTCGTGGTGCAGATGGTGCTGGTGGTCGACGGTG
Found at i:53971 original size:15 final size:15
Alignment explanation
Indices: 53948--54040 Score: 60
Period size: 15 Copynumber: 5.8 Consensus size: 15
53938 GTCGTACAAG
53948 GCGTAGTGGTGCTCA
1 GCGTAGTGGTGCTCA
* * *
53963 GCGTGGTGGTGCACG
1 GCGTAGTGGTGCTCA
*
53978 GCGTAGTGGTACTCAGA
1 GCGTAGTGGTGCTC--A
* * *
53995 GTAGTAGTGGTGCACG
1 G-CGTAGTGGTGCTCA
*
54011 GAGTAGTGGTGCTCAGA
1 GCGTAGTGGTGCTC--A
54028 GTCGTAGTGGTGC
1 G-CGTAGTGGTGC
54041 ACGGAGTCGT
Statistics
Matches: 58, Mismatches: 14, Indels: 9
0.72 0.17 0.11
Matches are distributed among these distances:
15 35 0.60
16 1 0.02
17 2 0.03
18 20 0.34
ACGTcount: A:0.16, C:0.16, G:0.43, T:0.25
Consensus pattern (15 bp):
GCGTAGTGGTGCTCA
Left flanking sequence: Indices 53448 -- 53947
GGTGGTGATGGTGGTGGTTGTCGTCCAGGGAGTCGTCGTCGTGGAAGTAGACGGGGTACACGTGG
GGCACAGTGTCGTAGGCGTCGGTGTAGTAGTACAGGGCGTCGTCAGCGAGGTTGTGGTCGTGCAT
GGCGTCGTGGTGGTGCTCGTAGACGGGGTGCAAGTCGGGCACAGCGTTGTAGGCGTAGTGCACGA
GGTGGTGGTGGTCGTCGTACAAGGCGTAGTGGTGGTGGTTGTAGTGCAAGGCGTCGTCGTCGTCG
TTGTGGTACAAGGCGTAGTAGTGGTGGTTGTAGTACAAGGCGTCGTCGTCGTCGTCGTGGTACCA
GGTGTAGTTGTAGTGCTCGTCGTTGTTGAAGTGGACGGGGTGCACGTAGGACACAGAGTGGTGGG
GGTTGTGCACGGGGTTGTCGTTGTAGTCGACAGCGTAGTCGTGCACGGGGTAGTAGTCGTCGAAG
TCGAAGGAGTGCAAGTAGGGCACAGCGTCGTCGGCGTCGTACAAG
Right flanking sequence: Indices 54041 -- 54540
ACGGAGTCGTTGAGCTAGTGGTCCACAGAGTCGTGGTGCTAGTCAGAGGCGTACACGTAGGACAC
AGAGTAGTAGGGGTGGTACAAGGAGTCGTCGTACTCAGAGTCGTCGTCGTACAAGGAGTAGTAGT
GCTCAGAGTCGTCGTCGTGCAGGGAGTAGTCGTGCTCAGAGTCGTCGTCGTGCAAGGAGTAGTCG
TCGTGCTCAGCGTCGTGGTGCAGATGGTGCTGGTGGTCGACGGTGTGCAAGTTGGGCACAGAGTA
GTCGGCGTCGTGCAAGGAGTCGTAGTGCTCAGAGTCGTCGTCGTGCAAGGCGTAGTAGTGCTCAG
CGTCGTCGTCGTGCACGGAGTCGGGGTAGTAGTCGTGGTACAAGGAGTCGAAGTCGTGGTGGTAG
TGCACGGAGTCAGGGTAGTGGTCGTGGTACACGGCGTCGACGTAGTGGTTGTAGTACACGGCGTG
GTGGTTGTAGTCGTGGTACACGGCGTGGTGGTTGTAGTCGTGGTA
Found at i:54001 original size:18 final size:18
Alignment explanation
Indices: 53980--54040 Score: 74
Period size: 18 Copynumber: 3.6 Consensus size: 18
53970 GGTGCACGGC
*
53980 GTAGTGGTACTCAGAGTA
1 GTAGTGGTGCTCAGAGTA
*
53998 GTAGTGGTGCAC-G-G-A
1 GTAGTGGTGCTCAGAGTA
*
54013 GTAGTGGTGCTCAGAGTC
1 GTAGTGGTGCTCAGAGTA
54031 GTAGTGGTGC
1 GTAGTGGTGC
54041 ACGGAGTCGT
Statistics
Matches: 36, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
15 12 0.33
16 2 0.06
17 2 0.06
18 20 0.56
ACGTcount: A:0.20, C:0.13, G:0.41, T:0.26
Consensus pattern (18 bp):
GTAGTGGTGCTCAGAGTA
Left flanking sequence: Indices 53480 -- 53979
TCGTCGTCGTGGAAGTAGACGGGGTACACGTGGGGCACAGTGTCGTAGGCGTCGGTGTAGTAGTA
CAGGGCGTCGTCAGCGAGGTTGTGGTCGTGCATGGCGTCGTGGTGGTGCTCGTAGACGGGGTGCA
AGTCGGGCACAGCGTTGTAGGCGTAGTGCACGAGGTGGTGGTGGTCGTCGTACAAGGCGTAGTGG
TGGTGGTTGTAGTGCAAGGCGTCGTCGTCGTCGTTGTGGTACAAGGCGTAGTAGTGGTGGTTGTA
GTACAAGGCGTCGTCGTCGTCGTCGTGGTACCAGGTGTAGTTGTAGTGCTCGTCGTTGTTGAAGT
GGACGGGGTGCACGTAGGACACAGAGTGGTGGGGGTTGTGCACGGGGTTGTCGTTGTAGTCGACA
GCGTAGTCGTGCACGGGGTAGTAGTCGTCGAAGTCGAAGGAGTGCAAGTAGGGCACAGCGTCGTC
GGCGTCGTACAAGGCGTAGTGGTGCTCAGCGTGGTGGTGCACGGC
Right flanking sequence: Indices 54041 -- 54540
ACGGAGTCGTTGAGCTAGTGGTCCACAGAGTCGTGGTGCTAGTCAGAGGCGTACACGTAGGACAC
AGAGTAGTAGGGGTGGTACAAGGAGTCGTCGTACTCAGAGTCGTCGTCGTACAAGGAGTAGTAGT
GCTCAGAGTCGTCGTCGTGCAGGGAGTAGTCGTGCTCAGAGTCGTCGTCGTGCAAGGAGTAGTCG
TCGTGCTCAGCGTCGTGGTGCAGATGGTGCTGGTGGTCGACGGTGTGCAAGTTGGGCACAGAGTA
GTCGGCGTCGTGCAAGGAGTCGTAGTGCTCAGAGTCGTCGTCGTGCAAGGCGTAGTAGTGCTCAG
CGTCGTCGTCGTGCACGGAGTCGGGGTAGTAGTCGTGGTACAAGGAGTCGAAGTCGTGGTGGTAG
TGCACGGAGTCAGGGTAGTGGTCGTGGTACACGGCGTCGACGTAGTGGTTGTAGTACACGGCGTG
GTGGTTGTAGTCGTGGTACACGGCGTGGTGGTTGTAGTCGTGGTA
Found at i:54045 original size:33 final size:33
Alignment explanation
Indices: 53950--54047 Score: 139
Period size: 33 Copynumber: 3.1 Consensus size: 33
53940 CGTACAAGGC
* *
53950 GTAGTGGTGCTC--AG-CGTGGTGGTGCACGGC
1 GTAGTGGTGCTCAGAGTCGTAGTGGTGCACGGA
* *
53980 GTAGTGGTACTCAGAGTAGTAGTGGTGCACGGA
1 GTAGTGGTGCTCAGAGTCGTAGTGGTGCACGGA
54013 GTAGTGGTGCTCAGAGTCGTAGTGGTGCACGGA
1 GTAGTGGTGCTCAGAGTCGTAGTGGTGCACGGA
54046 GT
1 GT
54048 CGTTGAGCTA
Statistics
Matches: 59, Mismatches: 6, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
30 11 0.19
32 2 0.03
33 46 0.78
ACGTcount: A:0.17, C:0.15, G:0.43, T:0.24
Consensus pattern (33 bp):
GTAGTGGTGCTCAGAGTCGTAGTGGTGCACGGA
Left flanking sequence: Indices 53450 -- 53949
TGGTGATGGTGGTGGTTGTCGTCCAGGGAGTCGTCGTCGTGGAAGTAGACGGGGTACACGTGGGG
CACAGTGTCGTAGGCGTCGGTGTAGTAGTACAGGGCGTCGTCAGCGAGGTTGTGGTCGTGCATGG
CGTCGTGGTGGTGCTCGTAGACGGGGTGCAAGTCGGGCACAGCGTTGTAGGCGTAGTGCACGAGG
TGGTGGTGGTCGTCGTACAAGGCGTAGTGGTGGTGGTTGTAGTGCAAGGCGTCGTCGTCGTCGTT
GTGGTACAAGGCGTAGTAGTGGTGGTTGTAGTACAAGGCGTCGTCGTCGTCGTCGTGGTACCAGG
TGTAGTTGTAGTGCTCGTCGTTGTTGAAGTGGACGGGGTGCACGTAGGACACAGAGTGGTGGGGG
TTGTGCACGGGGTTGTCGTTGTAGTCGACAGCGTAGTCGTGCACGGGGTAGTAGTCGTCGAAGTC
GAAGGAGTGCAAGTAGGGCACAGCGTCGTCGGCGTCGTACAAGGC
Right flanking sequence: Indices 54048 -- 54547
CGTTGAGCTAGTGGTCCACAGAGTCGTGGTGCTAGTCAGAGGCGTACACGTAGGACACAGAGTAG
TAGGGGTGGTACAAGGAGTCGTCGTACTCAGAGTCGTCGTCGTACAAGGAGTAGTAGTGCTCAGA
GTCGTCGTCGTGCAGGGAGTAGTCGTGCTCAGAGTCGTCGTCGTGCAAGGAGTAGTCGTCGTGCT
CAGCGTCGTGGTGCAGATGGTGCTGGTGGTCGACGGTGTGCAAGTTGGGCACAGAGTAGTCGGCG
TCGTGCAAGGAGTCGTAGTGCTCAGAGTCGTCGTCGTGCAAGGCGTAGTAGTGCTCAGCGTCGTC
GTCGTGCACGGAGTCGGGGTAGTAGTCGTGGTACAAGGAGTCGAAGTCGTGGTGGTAGTGCACGG
AGTCAGGGTAGTGGTCGTGGTACACGGCGTCGACGTAGTGGTTGTAGTACACGGCGTGGTGGTTG
TAGTCGTGGTACACGGCGTGGTGGTTGTAGTCGTGGTACACGGCG
Found at i:54047 original size:18 final size:18
Alignment explanation
Indices: 53968--54050 Score: 70
Period size: 18 Copynumber: 4.9 Consensus size: 18
53958 GCTCAGCGTG
53968 GTGGTGCAC-G-G-CGTA
1 GTGGTGCACAGAGTCGTA
* * *
53983 GTGGTACTCAGAGTAGTA
1 GTGGTGCACAGAGTCGTA
*
54001 GTGGTGCAC-G-G-AGTA
1 GTGGTGCACAGAGTCGTA
*
54016 GTGGTGCTCAGAGTCGTA
1 GTGGTGCACAGAGTCGTA
*
54034 GTGGTGCACGGAGTCGT
1 GTGGTGCACAGAGTCGT
54051 TGAGCTAGTG
Statistics
Matches: 53, Mismatches: 9, Indels: 9
0.75 0.13 0.13
Matches are distributed among these distances:
15 19 0.36
16 3 0.06
17 3 0.06
18 28 0.53
ACGTcount: A:0.18, C:0.16, G:0.42, T:0.24
Consensus pattern (18 bp):
GTGGTGCACAGAGTCGTA
Left flanking sequence: Indices 53468 -- 53967
TCGTCCAGGGAGTCGTCGTCGTGGAAGTAGACGGGGTACACGTGGGGCACAGTGTCGTAGGCGTC
GGTGTAGTAGTACAGGGCGTCGTCAGCGAGGTTGTGGTCGTGCATGGCGTCGTGGTGGTGCTCGT
AGACGGGGTGCAAGTCGGGCACAGCGTTGTAGGCGTAGTGCACGAGGTGGTGGTGGTCGTCGTAC
AAGGCGTAGTGGTGGTGGTTGTAGTGCAAGGCGTCGTCGTCGTCGTTGTGGTACAAGGCGTAGTA
GTGGTGGTTGTAGTACAAGGCGTCGTCGTCGTCGTCGTGGTACCAGGTGTAGTTGTAGTGCTCGT
CGTTGTTGAAGTGGACGGGGTGCACGTAGGACACAGAGTGGTGGGGGTTGTGCACGGGGTTGTCG
TTGTAGTCGACAGCGTAGTCGTGCACGGGGTAGTAGTCGTCGAAGTCGAAGGAGTGCAAGTAGGG
CACAGCGTCGTCGGCGTCGTACAAGGCGTAGTGGTGCTCAGCGTG
Right flanking sequence: Indices 54051 -- 54550
TGAGCTAGTGGTCCACAGAGTCGTGGTGCTAGTCAGAGGCGTACACGTAGGACACAGAGTAGTAG
GGGTGGTACAAGGAGTCGTCGTACTCAGAGTCGTCGTCGTACAAGGAGTAGTAGTGCTCAGAGTC
GTCGTCGTGCAGGGAGTAGTCGTGCTCAGAGTCGTCGTCGTGCAAGGAGTAGTCGTCGTGCTCAG
CGTCGTGGTGCAGATGGTGCTGGTGGTCGACGGTGTGCAAGTTGGGCACAGAGTAGTCGGCGTCG
TGCAAGGAGTCGTAGTGCTCAGAGTCGTCGTCGTGCAAGGCGTAGTAGTGCTCAGCGTCGTCGTC
GTGCACGGAGTCGGGGTAGTAGTCGTGGTACAAGGAGTCGAAGTCGTGGTGGTAGTGCACGGAGT
CAGGGTAGTGGTCGTGGTACACGGCGTCGACGTAGTGGTTGTAGTACACGGCGTGGTGGTTGTAG
TCGTGGTACACGGCGTGGTGGTTGTAGTCGTGGTACACGGCGTGG
Found at i:54071 original size:24 final size:24
Alignment explanation
Indices: 54032--54083 Score: 68
Period size: 24 Copynumber: 2.2 Consensus size: 24
54022 CTCAGAGTCG
* * *
54032 TAGTGGTGCACGGAGTCGTTGAGC
1 TAGTGGTCCACAGAGTCGTGGAGC
*
54056 TAGTGGTCCACAGAGTCGTGGTGC
1 TAGTGGTCCACAGAGTCGTGGAGC
54080 TAGT
1 TAGT
54084 CAGAGGCGTA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.17, C:0.17, G:0.38, T:0.27
Consensus pattern (24 bp):
TAGTGGTCCACAGAGTCGTGGAGC
Left flanking sequence: Indices 53532 -- 54031
CGGTGTAGTAGTACAGGGCGTCGTCAGCGAGGTTGTGGTCGTGCATGGCGTCGTGGTGGTGCTCG
TAGACGGGGTGCAAGTCGGGCACAGCGTTGTAGGCGTAGTGCACGAGGTGGTGGTGGTCGTCGTA
CAAGGCGTAGTGGTGGTGGTTGTAGTGCAAGGCGTCGTCGTCGTCGTTGTGGTACAAGGCGTAGT
AGTGGTGGTTGTAGTACAAGGCGTCGTCGTCGTCGTCGTGGTACCAGGTGTAGTTGTAGTGCTCG
TCGTTGTTGAAGTGGACGGGGTGCACGTAGGACACAGAGTGGTGGGGGTTGTGCACGGGGTTGTC
GTTGTAGTCGACAGCGTAGTCGTGCACGGGGTAGTAGTCGTCGAAGTCGAAGGAGTGCAAGTAGG
GCACAGCGTCGTCGGCGTCGTACAAGGCGTAGTGGTGCTCAGCGTGGTGGTGCACGGCGTAGTGG
TACTCAGAGTAGTAGTGGTGCACGGAGTAGTGGTGCTCAGAGTCG
Right flanking sequence: Indices 54084 -- 54583
CAGAGGCGTACACGTAGGACACAGAGTAGTAGGGGTGGTACAAGGAGTCGTCGTACTCAGAGTCG
TCGTCGTACAAGGAGTAGTAGTGCTCAGAGTCGTCGTCGTGCAGGGAGTAGTCGTGCTCAGAGTC
GTCGTCGTGCAAGGAGTAGTCGTCGTGCTCAGCGTCGTGGTGCAGATGGTGCTGGTGGTCGACGG
TGTGCAAGTTGGGCACAGAGTAGTCGGCGTCGTGCAAGGAGTCGTAGTGCTCAGAGTCGTCGTCG
TGCAAGGCGTAGTAGTGCTCAGCGTCGTCGTCGTGCACGGAGTCGGGGTAGTAGTCGTGGTACAA
GGAGTCGAAGTCGTGGTGGTAGTGCACGGAGTCAGGGTAGTGGTCGTGGTACACGGCGTCGACGT
AGTGGTTGTAGTACACGGCGTGGTGGTTGTAGTCGTGGTACACGGCGTGGTGGTTGTAGTCGTGG
TACACGGCGTGGTGGTTGTAGTCGTAGTACACGGCGTGGTAGTAG
Found at i:54146 original size:15 final size:14
Alignment explanation
Indices: 54128--54219 Score: 58
Period size: 15 Copynumber: 5.8 Consensus size: 14
54118 GTGGTACAAG
54128 GAGTCGTCGTACTCA
1 GAGTCGTCGT-CTCA
54143 GAGTCGTCGTCGTACAA
1 GAGTCGTCGTC-T-C-A
* *
54160 GGAGTAGTAGTGCTCA
1 -GAGTCGTCGT-CTCA
54176 GAGTCGTCGTCGTGCA
1 GAGTCGTCGTC-T-CA
*
54192 GGGAGTAGTCGTGCTCA
1 --GAGTCGTCGT-CTCA
54209 GAGTCGTCGTC
1 GAGTCGTCGTC
54220 GTGCAAGGAG
Statistics
Matches: 61, Mismatches: 6, Indels: 21
0.69 0.07 0.24
Matches are distributed among these distances:
14 3 0.05
15 29 0.48
16 4 0.07
17 4 0.07
18 19 0.31
19 2 0.03
ACGTcount: A:0.18, C:0.22, G:0.35, T:0.25
Consensus pattern (14 bp):
GAGTCGTCGTCTCA
Left flanking sequence: Indices 53628 -- 54127
AGGCGTAGTGCACGAGGTGGTGGTGGTCGTCGTACAAGGCGTAGTGGTGGTGGTTGTAGTGCAAG
GCGTCGTCGTCGTCGTTGTGGTACAAGGCGTAGTAGTGGTGGTTGTAGTACAAGGCGTCGTCGTC
GTCGTCGTGGTACCAGGTGTAGTTGTAGTGCTCGTCGTTGTTGAAGTGGACGGGGTGCACGTAGG
ACACAGAGTGGTGGGGGTTGTGCACGGGGTTGTCGTTGTAGTCGACAGCGTAGTCGTGCACGGGG
TAGTAGTCGTCGAAGTCGAAGGAGTGCAAGTAGGGCACAGCGTCGTCGGCGTCGTACAAGGCGTA
GTGGTGCTCAGCGTGGTGGTGCACGGCGTAGTGGTACTCAGAGTAGTAGTGGTGCACGGAGTAGT
GGTGCTCAGAGTCGTAGTGGTGCACGGAGTCGTTGAGCTAGTGGTCCACAGAGTCGTGGTGCTAG
TCAGAGGCGTACACGTAGGACACAGAGTAGTAGGGGTGGTACAAG
Right flanking sequence: Indices 54220 -- 54719
GTGCAAGGAGTAGTCGTCGTGCTCAGCGTCGTGGTGCAGATGGTGCTGGTGGTCGACGGTGTGCA
AGTTGGGCACAGAGTAGTCGGCGTCGTGCAAGGAGTCGTAGTGCTCAGAGTCGTCGTCGTGCAAG
GCGTAGTAGTGCTCAGCGTCGTCGTCGTGCACGGAGTCGGGGTAGTAGTCGTGGTACAAGGAGTC
GAAGTCGTGGTGGTAGTGCACGGAGTCAGGGTAGTGGTCGTGGTACACGGCGTCGACGTAGTGGT
TGTAGTACACGGCGTGGTGGTTGTAGTCGTGGTACACGGCGTGGTGGTTGTAGTCGTGGTACACG
GCGTGGTGGTTGTAGTCGTAGTACACGGCGTGGTAGTAGTAGTCGTAGTACACGGCGTGGTAGTA
GTAGTCGTAGTACAGGGGGTAGTAGTTGTAGAAGTGGTGCAAGGAGTCAGCGTCGTGCTACACTT
CTCGCACGGAGTTGAAGTCGTAGTACAAGTCGTCTTCTGACACTC
Found at i:54159 original size:33 final size:33
Alignment explanation
Indices: 54121--54236 Score: 178
Period size: 33 Copynumber: 3.5 Consensus size: 33
54111 AGTAGGGGTG
* *
54121 GTACAAGGAGTCGTCGTACTCAGAGTCGTCGTC
1 GTACAAGGAGTAGTCGTGCTCAGAGTCGTCGTC
*
54154 GTACAAGGAGTAGTAGTGCTCAGAGTCGTCGTC
1 GTACAAGGAGTAGTCGTGCTCAGAGTCGTCGTC
* *
54187 GTGCAGGGAGTAGTCGTGCTCAGAGTCGTCGTC
1 GTACAAGGAGTAGTCGTGCTCAGAGTCGTCGTC
*
54220 GTGCAAGGAGTAGTCGT
1 GTACAAGGAGTAGTCGT
54237 CGTGCTCAGC
Statistics
Matches: 76, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
33 76 1.00
ACGTcount: A:0.21, C:0.20, G:0.35, T:0.24
Consensus pattern (33 bp):
GTACAAGGAGTAGTCGTGCTCAGAGTCGTCGTC
Left flanking sequence: Indices 53621 -- 54120
GCGTTGTAGGCGTAGTGCACGAGGTGGTGGTGGTCGTCGTACAAGGCGTAGTGGTGGTGGTTGTA
GTGCAAGGCGTCGTCGTCGTCGTTGTGGTACAAGGCGTAGTAGTGGTGGTTGTAGTACAAGGCGT
CGTCGTCGTCGTCGTGGTACCAGGTGTAGTTGTAGTGCTCGTCGTTGTTGAAGTGGACGGGGTGC
ACGTAGGACACAGAGTGGTGGGGGTTGTGCACGGGGTTGTCGTTGTAGTCGACAGCGTAGTCGTG
CACGGGGTAGTAGTCGTCGAAGTCGAAGGAGTGCAAGTAGGGCACAGCGTCGTCGGCGTCGTACA
AGGCGTAGTGGTGCTCAGCGTGGTGGTGCACGGCGTAGTGGTACTCAGAGTAGTAGTGGTGCACG
GAGTAGTGGTGCTCAGAGTCGTAGTGGTGCACGGAGTCGTTGAGCTAGTGGTCCACAGAGTCGTG
GTGCTAGTCAGAGGCGTACACGTAGGACACAGAGTAGTAGGGGTG
Right flanking sequence: Indices 54237 -- 54736
CGTGCTCAGCGTCGTGGTGCAGATGGTGCTGGTGGTCGACGGTGTGCAAGTTGGGCACAGAGTAG
TCGGCGTCGTGCAAGGAGTCGTAGTGCTCAGAGTCGTCGTCGTGCAAGGCGTAGTAGTGCTCAGC
GTCGTCGTCGTGCACGGAGTCGGGGTAGTAGTCGTGGTACAAGGAGTCGAAGTCGTGGTGGTAGT
GCACGGAGTCAGGGTAGTGGTCGTGGTACACGGCGTCGACGTAGTGGTTGTAGTACACGGCGTGG
TGGTTGTAGTCGTGGTACACGGCGTGGTGGTTGTAGTCGTGGTACACGGCGTGGTGGTTGTAGTC
GTAGTACACGGCGTGGTAGTAGTAGTCGTAGTACACGGCGTGGTAGTAGTAGTCGTAGTACAGGG
GGTAGTAGTTGTAGAAGTGGTGCAAGGAGTCAGCGTCGTGCTACACTTCTCGCACGGAGTTGAAG
TCGTAGTACAAGTCGTCTTCTGACACTCGGTGCACGGATTCCCAT
Found at i:54164 original size:18 final size:17
Alignment explanation
Indices: 54124--54239 Score: 70
Period size: 18 Copynumber: 7.0 Consensus size: 17
54114 AGGGGTGGTA
54124 CAAGGAGTCGTCGTAC-T
1 CAAGGAGTCGTCGT-CGT
54141 C-A-GAGTCGTCGTCGT
1 CAAGGAGTCGTCGTCGT
* *
54156 ACAAGGAGTAGTAGT-GCT
1 -CAAGGAGTCGTCGTCG-T
54174 C-A-GAGTCGTCGTCGT
1 CAAGGAGTCGTCGTCGT
* *
54189 GCAGGGAGTAGTCGT-GCT
1 -CAAGGAGTCGTCGTCG-T
54207 C-A-GAGTCGTCGTCGT
1 CAAGGAGTCGTCGTCGT
*
54222 GCAAGGAGTAGTCGTCGT
1 -CAAGGAGTCGTCGTCGT
54240 GCTCAGCGTC
Statistics
Matches: 76, Mismatches: 9, Indels: 27
0.68 0.08 0.24
Matches are distributed among these distances:
14 1 0.01
15 30 0.39
16 7 0.09
17 7 0.09
18 31 0.41
ACGTcount: A:0.20, C:0.21, G:0.35, T:0.24
Consensus pattern (17 bp):
CAAGGAGTCGTCGTCGT
Left flanking sequence: Indices 53624 -- 54123
TTGTAGGCGTAGTGCACGAGGTGGTGGTGGTCGTCGTACAAGGCGTAGTGGTGGTGGTTGTAGTG
CAAGGCGTCGTCGTCGTCGTTGTGGTACAAGGCGTAGTAGTGGTGGTTGTAGTACAAGGCGTCGT
CGTCGTCGTCGTGGTACCAGGTGTAGTTGTAGTGCTCGTCGTTGTTGAAGTGGACGGGGTGCACG
TAGGACACAGAGTGGTGGGGGTTGTGCACGGGGTTGTCGTTGTAGTCGACAGCGTAGTCGTGCAC
GGGGTAGTAGTCGTCGAAGTCGAAGGAGTGCAAGTAGGGCACAGCGTCGTCGGCGTCGTACAAGG
CGTAGTGGTGCTCAGCGTGGTGGTGCACGGCGTAGTGGTACTCAGAGTAGTAGTGGTGCACGGAG
TAGTGGTGCTCAGAGTCGTAGTGGTGCACGGAGTCGTTGAGCTAGTGGTCCACAGAGTCGTGGTG
CTAGTCAGAGGCGTACACGTAGGACACAGAGTAGTAGGGGTGGTA
Right flanking sequence: Indices 54240 -- 54739
GCTCAGCGTCGTGGTGCAGATGGTGCTGGTGGTCGACGGTGTGCAAGTTGGGCACAGAGTAGTCG
GCGTCGTGCAAGGAGTCGTAGTGCTCAGAGTCGTCGTCGTGCAAGGCGTAGTAGTGCTCAGCGTC
GTCGTCGTGCACGGAGTCGGGGTAGTAGTCGTGGTACAAGGAGTCGAAGTCGTGGTGGTAGTGCA
CGGAGTCAGGGTAGTGGTCGTGGTACACGGCGTCGACGTAGTGGTTGTAGTACACGGCGTGGTGG
TTGTAGTCGTGGTACACGGCGTGGTGGTTGTAGTCGTGGTACACGGCGTGGTGGTTGTAGTCGTA
GTACACGGCGTGGTAGTAGTAGTCGTAGTACACGGCGTGGTAGTAGTAGTCGTAGTACAGGGGGT
AGTAGTTGTAGAAGTGGTGCAAGGAGTCAGCGTCGTGCTACACTTCTCGCACGGAGTTGAAGTCG
TAGTACAAGTCGTCTTCTGACACTCGGTGCACGGATTCCCATTCT
Found at i:54250 original size:33 final size:35
Alignment explanation
Indices: 54129--54257 Score: 130
Period size: 33 Copynumber: 3.8 Consensus size: 35
54119 TGGTACAAGG
* *
54129 AGTCGTCGTACTCAGAGTCGTCGTCGTACAAGGAGT
1 AGTCGTCGTGCTCA-AGTCGTCGTCGTGCAAGGAGT
*
54165 A---GTAGTGCTCAGAGTCGTCGTCGTGC-AGG-G-
1 AGTCGTCGTGCTCA-AGTCGTCGTCGTGCAAGGAGT
*
54195 AGTAGTCGTGCTCAGAGTCGTCGTCGTGCAAGGAGT
1 AGTCGTCGTGCTCA-AGTCGTCGTCGTGCAAGGAGT
*
54231 AGTCGTCGTGCTC-AG-CGTCGTGGTGCA
1 AGTCGTCGTGCTCAAGTCGTCGTCGTGCA
54258 GATGGTGCTG
Statistics
Matches: 81, Mismatches: 6, Indels: 15
0.79 0.06 0.15
Matches are distributed among these distances:
30 1 0.01
31 1 0.01
32 3 0.04
33 57 0.70
34 5 0.06
35 1 0.01
36 13 0.16
ACGTcount: A:0.18, C:0.22, G:0.36, T:0.25
Consensus pattern (35 bp):
AGTCGTCGTGCTCAAGTCGTCGTCGTGCAAGGAGT
Left flanking sequence: Indices 53629 -- 54128
GGCGTAGTGCACGAGGTGGTGGTGGTCGTCGTACAAGGCGTAGTGGTGGTGGTTGTAGTGCAAGG
CGTCGTCGTCGTCGTTGTGGTACAAGGCGTAGTAGTGGTGGTTGTAGTACAAGGCGTCGTCGTCG
TCGTCGTGGTACCAGGTGTAGTTGTAGTGCTCGTCGTTGTTGAAGTGGACGGGGTGCACGTAGGA
CACAGAGTGGTGGGGGTTGTGCACGGGGTTGTCGTTGTAGTCGACAGCGTAGTCGTGCACGGGGT
AGTAGTCGTCGAAGTCGAAGGAGTGCAAGTAGGGCACAGCGTCGTCGGCGTCGTACAAGGCGTAG
TGGTGCTCAGCGTGGTGGTGCACGGCGTAGTGGTACTCAGAGTAGTAGTGGTGCACGGAGTAGTG
GTGCTCAGAGTCGTAGTGGTGCACGGAGTCGTTGAGCTAGTGGTCCACAGAGTCGTGGTGCTAGT
CAGAGGCGTACACGTAGGACACAGAGTAGTAGGGGTGGTACAAGG
Right flanking sequence: Indices 54258 -- 54757
GATGGTGCTGGTGGTCGACGGTGTGCAAGTTGGGCACAGAGTAGTCGGCGTCGTGCAAGGAGTCG
TAGTGCTCAGAGTCGTCGTCGTGCAAGGCGTAGTAGTGCTCAGCGTCGTCGTCGTGCACGGAGTC
GGGGTAGTAGTCGTGGTACAAGGAGTCGAAGTCGTGGTGGTAGTGCACGGAGTCAGGGTAGTGGT
CGTGGTACACGGCGTCGACGTAGTGGTTGTAGTACACGGCGTGGTGGTTGTAGTCGTGGTACACG
GCGTGGTGGTTGTAGTCGTGGTACACGGCGTGGTGGTTGTAGTCGTAGTACACGGCGTGGTAGTA
GTAGTCGTAGTACACGGCGTGGTAGTAGTAGTCGTAGTACAGGGGGTAGTAGTTGTAGAAGTGGT
GCAAGGAGTCAGCGTCGTGCTACACTTCTCGCACGGAGTTGAAGTCGTAGTACAAGTCGTCTTCT
GACACTCGGTGCACGGATTCCCATTCTCGTCGTACTGAATGTCTC
Found at i:54257 original size:66 final size:65
Alignment explanation
Indices: 54118--54258 Score: 169
Period size: 66 Copynumber: 2.1 Consensus size: 65
54108 AGTAGTAGGG
* * *
54118 GTGGTACAAGGAGTCGTCGTACTCAGAGTCGTCGTCGTACAAGGAGTAGTAGTGCTCAGAGTCGT
1 GTGGTGCAGGGAGTAGTCGTACTCAGAGTCGTCGTCGTACAAGGAGTAGTAGTGCTCA-AGTCGT
54183 C
65 C
* * * *
54184 GTCGTGCAGGGAGTAGTCGTGCTCAGAGTCGTCGTCGTGCAAGGAGTAGTCGTCGTGCTC-AG-C
1 GTGGTGCAGGGAGTAGTCGTACTCAGAGTCGTCGTCGTACAAGGAGTA---GTAGTGCTCAAGTC
54247 GTC
63 GTC
54250 GTGGTGCAG
1 GTGGTGCAG
54259 ATGGTGCTGG
Statistics
Matches: 64, Mismatches: 8, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
66 54 0.84
67 2 0.03
69 8 0.12
ACGTcount: A:0.18, C:0.21, G:0.37, T:0.24
Consensus pattern (65 bp):
GTGGTGCAGGGAGTAGTCGTACTCAGAGTCGTCGTCGTACAAGGAGTAGTAGTGCTCAAGTCGTC
Left flanking sequence: Indices 53618 -- 54117
ACAGCGTTGTAGGCGTAGTGCACGAGGTGGTGGTGGTCGTCGTACAAGGCGTAGTGGTGGTGGTT
GTAGTGCAAGGCGTCGTCGTCGTCGTTGTGGTACAAGGCGTAGTAGTGGTGGTTGTAGTACAAGG
CGTCGTCGTCGTCGTCGTGGTACCAGGTGTAGTTGTAGTGCTCGTCGTTGTTGAAGTGGACGGGG
TGCACGTAGGACACAGAGTGGTGGGGGTTGTGCACGGGGTTGTCGTTGTAGTCGACAGCGTAGTC
GTGCACGGGGTAGTAGTCGTCGAAGTCGAAGGAGTGCAAGTAGGGCACAGCGTCGTCGGCGTCGT
ACAAGGCGTAGTGGTGCTCAGCGTGGTGGTGCACGGCGTAGTGGTACTCAGAGTAGTAGTGGTGC
ACGGAGTAGTGGTGCTCAGAGTCGTAGTGGTGCACGGAGTCGTTGAGCTAGTGGTCCACAGAGTC
GTGGTGCTAGTCAGAGGCGTACACGTAGGACACAGAGTAGTAGGG
Right flanking sequence: Indices 54259 -- 54758
ATGGTGCTGGTGGTCGACGGTGTGCAAGTTGGGCACAGAGTAGTCGGCGTCGTGCAAGGAGTCGT
AGTGCTCAGAGTCGTCGTCGTGCAAGGCGTAGTAGTGCTCAGCGTCGTCGTCGTGCACGGAGTCG
GGGTAGTAGTCGTGGTACAAGGAGTCGAAGTCGTGGTGGTAGTGCACGGAGTCAGGGTAGTGGTC
GTGGTACACGGCGTCGACGTAGTGGTTGTAGTACACGGCGTGGTGGTTGTAGTCGTGGTACACGG
CGTGGTGGTTGTAGTCGTGGTACACGGCGTGGTGGTTGTAGTCGTAGTACACGGCGTGGTAGTAG
TAGTCGTAGTACACGGCGTGGTAGTAGTAGTCGTAGTACAGGGGGTAGTAGTTGTAGAAGTGGTG
CAAGGAGTCAGCGTCGTGCTACACTTCTCGCACGGAGTTGAAGTCGTAGTACAAGTCGTCTTCTG
ACACTCGGTGCACGGATTCCCATTCTCGTCGTACTGAATGTCTCC
Found at i:54343 original size:33 final size:33
Alignment explanation
Indices: 54300--54388 Score: 133
Period size: 33 Copynumber: 2.7 Consensus size: 33
54290 GGCACAGAGT
*
54300 AGTCGGCGTCGTGCAAGGAGTCGTAGTGCTCAG
1 AGTCGTCGTCGTGCAAGGAGTCGTAGTGCTCAG
* *
54333 AGTCGTCGTCGTGCAAGGCGTAGTAGTGCTCAG
1 AGTCGTCGTCGTGCAAGGAGTCGTAGTGCTCAG
* *
54366 CGTCGTCGTCGTGCACGGAGTCG
1 AGTCGTCGTCGTGCAAGGAGTCG
54389 GGGTAGTAGT
Statistics
Matches: 49, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 49 1.00
ACGTcount: A:0.16, C:0.24, G:0.38, T:0.22
Consensus pattern (33 bp):
AGTCGTCGTCGTGCAAGGAGTCGTAGTGCTCAG
Left flanking sequence: Indices 53800 -- 54299
GAAGTGGACGGGGTGCACGTAGGACACAGAGTGGTGGGGGTTGTGCACGGGGTTGTCGTTGTAGT
CGACAGCGTAGTCGTGCACGGGGTAGTAGTCGTCGAAGTCGAAGGAGTGCAAGTAGGGCACAGCG
TCGTCGGCGTCGTACAAGGCGTAGTGGTGCTCAGCGTGGTGGTGCACGGCGTAGTGGTACTCAGA
GTAGTAGTGGTGCACGGAGTAGTGGTGCTCAGAGTCGTAGTGGTGCACGGAGTCGTTGAGCTAGT
GGTCCACAGAGTCGTGGTGCTAGTCAGAGGCGTACACGTAGGACACAGAGTAGTAGGGGTGGTAC
AAGGAGTCGTCGTACTCAGAGTCGTCGTCGTACAAGGAGTAGTAGTGCTCAGAGTCGTCGTCGTG
CAGGGAGTAGTCGTGCTCAGAGTCGTCGTCGTGCAAGGAGTAGTCGTCGTGCTCAGCGTCGTGGT
GCAGATGGTGCTGGTGGTCGACGGTGTGCAAGTTGGGCACAGAGT
Right flanking sequence: Indices 54389 -- 54888
GGGTAGTAGTCGTGGTACAAGGAGTCGAAGTCGTGGTGGTAGTGCACGGAGTCAGGGTAGTGGTC
GTGGTACACGGCGTCGACGTAGTGGTTGTAGTACACGGCGTGGTGGTTGTAGTCGTGGTACACGG
CGTGGTGGTTGTAGTCGTGGTACACGGCGTGGTGGTTGTAGTCGTAGTACACGGCGTGGTAGTAG
TAGTCGTAGTACACGGCGTGGTAGTAGTAGTCGTAGTACAGGGGGTAGTAGTTGTAGAAGTGGTG
CAAGGAGTCAGCGTCGTGCTACACTTCTCGCACGGAGTTGAAGTCGTAGTACAAGTCGTCTTCTG
ACACTCGGTGCACGGATTCCCATTCTCGTCGTACTGAATGTCTCCAACAGTTCCACCAATGTTGT
TAACGTTGTTCCCCTTGTTGCCATTGCCATTGTTATTCCCGTTGTTGTCGCCCGAGTTCCCATTC
CCGTTCAAGTTGCCATTGCCTGTAACCGGGCCATTGGCAATTGAG
Found at i:54451 original size:27 final size:26
Alignment explanation
Indices: 54370--54491 Score: 82
Period size: 27 Copynumber: 4.5 Consensus size: 26
54360 GCTCAGCGTC
* *
54370 GTCGTCGTGCACGGAGTCGGGGTAGTA
1 GTCGTAGTGCACGGAGTC-GGGTAGTG
* * * * *
54397 GTCGTGGTACAAGGAGTCGAAGTCGTG
1 GTCGTAGTGCACGGAGTCG-GGTAGTG
*
54424 GTGGTAGTGCACGGAGTCAGGGTAGTG
1 GTCGTAGTGCACGGAGTC-GGGTAGTG
* * * *
54451 GTCGTGGTACACGGCGTCGACGTAGTG
1 GTCGTAGTGCACGGAGTCG-GGTAGTG
* *
54478 GTTGTAGTACACGG
1 GTCGTAGTGCACGG
54492 CGTGGTGGTT
Statistics
Matches: 73, Mismatches: 19, Indels: 6
0.74 0.19 0.06
Matches are distributed among these distances:
26 2 0.03
27 70 0.96
28 1 0.01
ACGTcount: A:0.18, C:0.16, G:0.43, T:0.23
Consensus pattern (26 bp):
GTCGTAGTGCACGGAGTCGGGTAGTG
Left flanking sequence: Indices 53870 -- 54369
GCGTAGTCGTGCACGGGGTAGTAGTCGTCGAAGTCGAAGGAGTGCAAGTAGGGCACAGCGTCGTC
GGCGTCGTACAAGGCGTAGTGGTGCTCAGCGTGGTGGTGCACGGCGTAGTGGTACTCAGAGTAGT
AGTGGTGCACGGAGTAGTGGTGCTCAGAGTCGTAGTGGTGCACGGAGTCGTTGAGCTAGTGGTCC
ACAGAGTCGTGGTGCTAGTCAGAGGCGTACACGTAGGACACAGAGTAGTAGGGGTGGTACAAGGA
GTCGTCGTACTCAGAGTCGTCGTCGTACAAGGAGTAGTAGTGCTCAGAGTCGTCGTCGTGCAGGG
AGTAGTCGTGCTCAGAGTCGTCGTCGTGCAAGGAGTAGTCGTCGTGCTCAGCGTCGTGGTGCAGA
TGGTGCTGGTGGTCGACGGTGTGCAAGTTGGGCACAGAGTAGTCGGCGTCGTGCAAGGAGTCGTA
GTGCTCAGAGTCGTCGTCGTGCAAGGCGTAGTAGTGCTCAGCGTC
Right flanking sequence: Indices 54492 -- 54991
CGTGGTGGTTGTAGTCGTGGTACACGGCGTGGTGGTTGTAGTCGTGGTACACGGCGTGGTGGTTG
TAGTCGTAGTACACGGCGTGGTAGTAGTAGTCGTAGTACACGGCGTGGTAGTAGTAGTCGTAGTA
CAGGGGGTAGTAGTTGTAGAAGTGGTGCAAGGAGTCAGCGTCGTGCTACACTTCTCGCACGGAGT
TGAAGTCGTAGTACAAGTCGTCTTCTGACACTCGGTGCACGGATTCCCATTCTCGTCGTACTGAA
TGTCTCCAACAGTTCCACCAATGTTGTTAACGTTGTTCCCCTTGTTGCCATTGCCATTGTTATTC
CCGTTGTTGTCGCCCGAGTTCCCATTCCCGTTCAAGTTGCCATTGCCTGTAACCGGGCCATTGGC
AATTGAGCCGTAGACATTGCCCTGAATGTTGGTGATGGAGATCTGGTATGTGTCTCTCTGGCTCA
ACTGAAAAAATCGGCGAGCAATGCTCTTGCTCCCAAGCTTCGTAG
Found at i:54514 original size:27 final size:27
Alignment explanation
Indices: 54444--54623 Score: 234
Period size: 27 Copynumber: 6.7 Consensus size: 27
54434 ACGGAGTCAG
* * * *
54444 GGTAGTGGTCGTGGTACACGGCGTCGA
1 GGTAGTAGTCGTAGTACACGGCGTGGT
* * *
54471 CGTAGTGGTTGTAGTACACGGCGTGGT
1 GGTAGTAGTCGTAGTACACGGCGTGGT
* *
54498 GGTTGTAGTCGTGGTACACGGCGTGGT
1 GGTAGTAGTCGTAGTACACGGCGTGGT
* *
54525 GGTTGTAGTCGTGGTACACGGCGTGGT
1 GGTAGTAGTCGTAGTACACGGCGTGGT
*
54552 GGTTGTAGTCGTAGTACACGGCGTGGT
1 GGTAGTAGTCGTAGTACACGGCGTGGT
*
54579 AGTAGTAGTCGTAGTACACGGCGTGGT
1 GGTAGTAGTCGTAGTACACGGCGTGGT
*
54606 AGTAGTAGTCGTAGTACA
1 GGTAGTAGTCGTAGTACA
54624 GGGGGTAGTA
Statistics
Matches: 140, Mismatches: 13, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 140 1.00
ACGTcount: A:0.17, C:0.15, G:0.41, T:0.28
Consensus pattern (27 bp):
GGTAGTAGTCGTAGTACACGGCGTGGT
Left flanking sequence: Indices 53944 -- 54443
CAAGGCGTAGTGGTGCTCAGCGTGGTGGTGCACGGCGTAGTGGTACTCAGAGTAGTAGTGGTGCA
CGGAGTAGTGGTGCTCAGAGTCGTAGTGGTGCACGGAGTCGTTGAGCTAGTGGTCCACAGAGTCG
TGGTGCTAGTCAGAGGCGTACACGTAGGACACAGAGTAGTAGGGGTGGTACAAGGAGTCGTCGTA
CTCAGAGTCGTCGTCGTACAAGGAGTAGTAGTGCTCAGAGTCGTCGTCGTGCAGGGAGTAGTCGT
GCTCAGAGTCGTCGTCGTGCAAGGAGTAGTCGTCGTGCTCAGCGTCGTGGTGCAGATGGTGCTGG
TGGTCGACGGTGTGCAAGTTGGGCACAGAGTAGTCGGCGTCGTGCAAGGAGTCGTAGTGCTCAGA
GTCGTCGTCGTGCAAGGCGTAGTAGTGCTCAGCGTCGTCGTCGTGCACGGAGTCGGGGTAGTAGT
CGTGGTACAAGGAGTCGAAGTCGTGGTGGTAGTGCACGGAGTCAG
Right flanking sequence: Indices 54624 -- 55123
GGGGGTAGTAGTTGTAGAAGTGGTGCAAGGAGTCAGCGTCGTGCTACACTTCTCGCACGGAGTTG
AAGTCGTAGTACAAGTCGTCTTCTGACACTCGGTGCACGGATTCCCATTCTCGTCGTACTGAATG
TCTCCAACAGTTCCACCAATGTTGTTAACGTTGTTCCCCTTGTTGCCATTGCCATTGTTATTCCC
GTTGTTGTCGCCCGAGTTCCCATTCCCGTTCAAGTTGCCATTGCCTGTAACCGGGCCATTGGCAA
TTGAGCCGTAGACATTGCCCTGAATGTTGGTGATGGAGATCTGGTATGTGTCTCTCTGGCTCAAC
TGAAAAAATCGGCGAGCAATGCTCTTGCTCCCAAGCTTCGTAGTGCCGCTGTAGTGAGCACCCGG
CTTCACTTTATCGGTTGCAATACACTGCAAGTAGGTCTTGTGGCCCTCACAATCAGCATAAATGC
CCAACAGCACCAGCGTACCAGCGGGCTGGCTGATAGCTTTAGGTA
Found at i:54516 original size:54 final size:53
Alignment explanation
Indices: 54390--54623 Score: 227
Period size: 54 Copynumber: 4.3 Consensus size: 53
54380 ACGGAGTCGG
* * * * * * * *
54390 GGTAGTAGTCGTGGTACAAGGAGTCGAAGTCGTGGTGGTAGTGCACGGAGTCAG-
1 GGTAGTAGTCGTGGTACACGGCGTCG-AGTAGTAGTCGTAGTACACGGCGT-GGT
* * *
54444 GGTAGTGGTCGTGGTACACGGCGTCGACGTAGTGGTTGTAGTACACGGCGTGGT
1 GGTAGTAGTCGTGGTACACGGCGTCGA-GTAGTAGTCGTAGTACACGGCGTGGT
* * * * *
54498 GGTTGTAGTCGTGGTACACGGCGTGGTGGTTGTAGTCGTGGTACACGGCGTGGT
1 GGTAGTAGTCGTGGTACACGGCGTCG-AGTAGTAGTCGTAGTACACGGCGTGGT
* * *
54552 GGTTGTAGTCGTAGTACACGGCGTGGTAGTAGTAGTCGTAGTACACGGCGTGGT
1 GGTAGTAGTCGTGGTACACGGCGTCG-AGTAGTAGTCGTAGTACACGGCGTGGT
* *
54606 AGTAGTAGTCGTAGTACA
1 GGTAGTAGTCGTGGTACA
54624 GGGGGTAGTA
Statistics
Matches: 155, Mismatches: 22, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
53 2 0.01
54 153 0.99
ACGTcount: A:0.18, C:0.15, G:0.41, T:0.26
Consensus pattern (53 bp):
GGTAGTAGTCGTGGTACACGGCGTCGAGTAGTAGTCGTAGTACACGGCGTGGT
Left flanking sequence: Indices 53890 -- 54389
GTAGTCGTCGAAGTCGAAGGAGTGCAAGTAGGGCACAGCGTCGTCGGCGTCGTACAAGGCGTAGT
GGTGCTCAGCGTGGTGGTGCACGGCGTAGTGGTACTCAGAGTAGTAGTGGTGCACGGAGTAGTGG
TGCTCAGAGTCGTAGTGGTGCACGGAGTCGTTGAGCTAGTGGTCCACAGAGTCGTGGTGCTAGTC
AGAGGCGTACACGTAGGACACAGAGTAGTAGGGGTGGTACAAGGAGTCGTCGTACTCAGAGTCGT
CGTCGTACAAGGAGTAGTAGTGCTCAGAGTCGTCGTCGTGCAGGGAGTAGTCGTGCTCAGAGTCG
TCGTCGTGCAAGGAGTAGTCGTCGTGCTCAGCGTCGTGGTGCAGATGGTGCTGGTGGTCGACGGT
GTGCAAGTTGGGCACAGAGTAGTCGGCGTCGTGCAAGGAGTCGTAGTGCTCAGAGTCGTCGTCGT
GCAAGGCGTAGTAGTGCTCAGCGTCGTCGTCGTGCACGGAGTCGG
Right flanking sequence: Indices 54624 -- 55123
GGGGGTAGTAGTTGTAGAAGTGGTGCAAGGAGTCAGCGTCGTGCTACACTTCTCGCACGGAGTTG
AAGTCGTAGTACAAGTCGTCTTCTGACACTCGGTGCACGGATTCCCATTCTCGTCGTACTGAATG
TCTCCAACAGTTCCACCAATGTTGTTAACGTTGTTCCCCTTGTTGCCATTGCCATTGTTATTCCC
GTTGTTGTCGCCCGAGTTCCCATTCCCGTTCAAGTTGCCATTGCCTGTAACCGGGCCATTGGCAA
TTGAGCCGTAGACATTGCCCTGAATGTTGGTGATGGAGATCTGGTATGTGTCTCTCTGGCTCAAC
TGAAAAAATCGGCGAGCAATGCTCTTGCTCCCAAGCTTCGTAGTGCCGCTGTAGTGAGCACCCGG
CTTCACTTTATCGGTTGCAATACACTGCAAGTAGGTCTTGTGGCCCTCACAATCAGCATAAATGC
CCAACAGCACCAGCGTACCAGCGGGCTGGCTGATAGCTTTAGGTA
Found at i:54518 original size:81 final size:81
Alignment explanation
Indices: 54391--54623 Score: 216
Period size: 81 Copynumber: 2.9 Consensus size: 81
54381 CGGAGTCGGG
* * * * * * * * * *
54391 GTAGTAGTCGTGGTACAAGGAGTCGAAGTCGTGGTGGTAGTGCACGGAGTCAG-GGTAGTGGTCG
1 GTAGTAGTCGTAGTACACGGCGTGGTAGTAGTAGTCGTAGTACACGGAGT-AGTGGTAGTAGTCG
54455 TGGTACACGGCGTCGAC
65 TGGTACACGGCGTCGAC
* * * * * * * *
54472 GTAGTGGTTGTAGTACACGGCGTGGTGGTTGTAGTCGTGGTACACGGCGTGGTGGTTGTAGTCGT
1 GTAGTAGTCGTAGTACACGGCGTGGTAGTAGTAGTCGTAGTACACGGAGTAGTGGTAGTAGTCGT
* **
54537 GGTACACGGCGTGGTG
66 GGTACACGGCGTCGAC
* * * *
54553 GTTGTAGTCGTAGTACACGGCGTGGTAGTAGTAGTCGTAGTACACGGCGTGGTAGTAGTAGTCGT
1 GTAGTAGTCGTAGTACACGGCGTGGTAGTAGTAGTCGTAGTACACGGAGTAGTGGTAGTAGTCGT
*
54618 AGTACA
66 GGTACA
54624 GGGGGTAGTA
Statistics
Matches: 122, Mismatches: 29, Indels: 2
0.80 0.19 0.01
Matches are distributed among these distances:
80 1 0.01
81 121 0.99
ACGTcount: A:0.18, C:0.15, G:0.41, T:0.27
Consensus pattern (81 bp):
GTAGTAGTCGTAGTACACGGCGTGGTAGTAGTAGTCGTAGTACACGGAGTAGTGGTAGTAGTCGT
GGTACACGGCGTCGAC
Left flanking sequence: Indices 53891 -- 54390
TAGTCGTCGAAGTCGAAGGAGTGCAAGTAGGGCACAGCGTCGTCGGCGTCGTACAAGGCGTAGTG
GTGCTCAGCGTGGTGGTGCACGGCGTAGTGGTACTCAGAGTAGTAGTGGTGCACGGAGTAGTGGT
GCTCAGAGTCGTAGTGGTGCACGGAGTCGTTGAGCTAGTGGTCCACAGAGTCGTGGTGCTAGTCA
GAGGCGTACACGTAGGACACAGAGTAGTAGGGGTGGTACAAGGAGTCGTCGTACTCAGAGTCGTC
GTCGTACAAGGAGTAGTAGTGCTCAGAGTCGTCGTCGTGCAGGGAGTAGTCGTGCTCAGAGTCGT
CGTCGTGCAAGGAGTAGTCGTCGTGCTCAGCGTCGTGGTGCAGATGGTGCTGGTGGTCGACGGTG
TGCAAGTTGGGCACAGAGTAGTCGGCGTCGTGCAAGGAGTCGTAGTGCTCAGAGTCGTCGTCGTG
CAAGGCGTAGTAGTGCTCAGCGTCGTCGTCGTGCACGGAGTCGGG
Right flanking sequence: Indices 54624 -- 55123
GGGGGTAGTAGTTGTAGAAGTGGTGCAAGGAGTCAGCGTCGTGCTACACTTCTCGCACGGAGTTG
AAGTCGTAGTACAAGTCGTCTTCTGACACTCGGTGCACGGATTCCCATTCTCGTCGTACTGAATG
TCTCCAACAGTTCCACCAATGTTGTTAACGTTGTTCCCCTTGTTGCCATTGCCATTGTTATTCCC
GTTGTTGTCGCCCGAGTTCCCATTCCCGTTCAAGTTGCCATTGCCTGTAACCGGGCCATTGGCAA
TTGAGCCGTAGACATTGCCCTGAATGTTGGTGATGGAGATCTGGTATGTGTCTCTCTGGCTCAAC
TGAAAAAATCGGCGAGCAATGCTCTTGCTCCCAAGCTTCGTAGTGCCGCTGTAGTGAGCACCCGG
CTTCACTTTATCGGTTGCAATACACTGCAAGTAGGTCTTGTGGCCCTCACAATCAGCATAAATGC
CCAACAGCACCAGCGTACCAGCGGGCTGGCTGATAGCTTTAGGTA
Found at i:54634 original size:27 final size:27
Alignment explanation
Indices: 54481--54640 Score: 230
Period size: 27 Copynumber: 5.9 Consensus size: 27
54471 CGTAGTGGTT
*
54481 GTAGTACACGGCGTGGTGGTTGTAGTC
1 GTAGTACACGGCGTGGTAGTTGTAGTC
* *
54508 GTGGTACACGGCGTGGTGGTTGTAGTC
1 GTAGTACACGGCGTGGTAGTTGTAGTC
* *
54535 GTGGTACACGGCGTGGTGGTTGTAGTC
1 GTAGTACACGGCGTGGTAGTTGTAGTC
*
54562 GTAGTACACGGCGTGGTAGTAGTAGTC
1 GTAGTACACGGCGTGGTAGTTGTAGTC
*
54589 GTAGTACACGGCGTGGTAGTAGTAGTC
1 GTAGTACACGGCGTGGTAGTTGTAGTC
* * *
54616 GTAGTACAGGGGGTAGTAGTTGTAG
1 GTAGTACACGGCGTGGTAGTTGTAG
54641 AAGTGGTGCA
Statistics
Matches: 125, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 125 1.00
ACGTcount: A:0.17, C:0.13, G:0.41, T:0.28
Consensus pattern (27 bp):
GTAGTACACGGCGTGGTAGTTGTAGTC
Left flanking sequence: Indices 53981 -- 54480
TAGTGGTACTCAGAGTAGTAGTGGTGCACGGAGTAGTGGTGCTCAGAGTCGTAGTGGTGCACGGA
GTCGTTGAGCTAGTGGTCCACAGAGTCGTGGTGCTAGTCAGAGGCGTACACGTAGGACACAGAGT
AGTAGGGGTGGTACAAGGAGTCGTCGTACTCAGAGTCGTCGTCGTACAAGGAGTAGTAGTGCTCA
GAGTCGTCGTCGTGCAGGGAGTAGTCGTGCTCAGAGTCGTCGTCGTGCAAGGAGTAGTCGTCGTG
CTCAGCGTCGTGGTGCAGATGGTGCTGGTGGTCGACGGTGTGCAAGTTGGGCACAGAGTAGTCGG
CGTCGTGCAAGGAGTCGTAGTGCTCAGAGTCGTCGTCGTGCAAGGCGTAGTAGTGCTCAGCGTCG
TCGTCGTGCACGGAGTCGGGGTAGTAGTCGTGGTACAAGGAGTCGAAGTCGTGGTGGTAGTGCAC
GGAGTCAGGGTAGTGGTCGTGGTACACGGCGTCGACGTAGTGGTT
Right flanking sequence: Indices 54641 -- 55140
AAGTGGTGCAAGGAGTCAGCGTCGTGCTACACTTCTCGCACGGAGTTGAAGTCGTAGTACAAGTC
GTCTTCTGACACTCGGTGCACGGATTCCCATTCTCGTCGTACTGAATGTCTCCAACAGTTCCACC
AATGTTGTTAACGTTGTTCCCCTTGTTGCCATTGCCATTGTTATTCCCGTTGTTGTCGCCCGAGT
TCCCATTCCCGTTCAAGTTGCCATTGCCTGTAACCGGGCCATTGGCAATTGAGCCGTAGACATTG
CCCTGAATGTTGGTGATGGAGATCTGGTATGTGTCTCTCTGGCTCAACTGAAAAAATCGGCGAGC
AATGCTCTTGCTCCCAAGCTTCGTAGTGCCGCTGTAGTGAGCACCCGGCTTCACTTTATCGGTTG
CAATACACTGCAAGTAGGTCTTGTGGCCCTCACAATCAGCATAAATGCCCAACAGCACCAGCGTA
CCAGCGGGCTGGCTGATAGCTTTAGGTAAATCCATAGTAAAGATG
Found at i:58065 original size:11 final size:12
Alignment explanation
Indices: 58046--58084 Score: 55
Period size: 11 Copynumber: 3.3 Consensus size: 12
58036 GGGTGAGGGT
58046 GTGTGGTGAGGA
1 GTGTGGTGAGGA
58058 GT-TGGTGAGG-
1 GTGTGGTGAGGA
58068 GTGTGGTGAGGAA
1 GTGTGGTGAGG-A
58081 GTGT
1 GTGT
58085 TGAGGTGCGT
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
10 2 0.08
11 16 0.67
12 2 0.08
13 4 0.17
ACGTcount: A:0.15, C:0.00, G:0.56, T:0.28
Consensus pattern (12 bp):
GTGTGGTGAGGA
Left flanking sequence: Indices 57546 -- 58045
AAACGGAGTTATCAACAGTGCAATGTGAATAAGGTTCGAATATCTTTGACGAAGCTGGCTTTCCG
CTCAAAAAGTCTTGTAGTAGATAGGTCAATAATTTACTCCATGAATCATTAACATTACTCTATTT
AAGCACCACGTTGGCACCACGCAATTCCAAGTACTCCTGGTCAACACTGGTACTCATGTTTTTCA
CCACTTCGGTGTAGATTTCCACGTTGTGGTAGCGCAAGCGGTTTGTCGGCAGTGTGTAGACCCCA
GCCAACCCGGTGATGTCACAGTATCTCTTTTGCGGCTTCAACGACGGAGGGGCTGCGATGCTCAT
GTAGGTCGGAGTGTCGAAGTGGAGCTGTTTCTTCGAGAGGTACTTTTGCTCGTCGGAGAGGAGCT
GGCGACACGCCTTGAACCGCCGGATCAAGGGTGGCCGGTCGGGGTTCTTGAAGCTATGATGCTTC
GTAGTGATCTCGCTCTTGTCAGCAAGGTCCATTGGGGGTGAGGGT
Right flanking sequence: Indices 58085 -- 58584
TGAGGTGCGTCTGGTGAGCGCGCACCAGAGTGTGCTGGATGCGCACAGACTAAAGTCTACCGAAT
ACCGTCGAACGTAGACGACTGAGATAACAGCTACAGTGTAGACGAGATAGCAGCTACAGTTGATA
CCTACCAGACACATTAGCAGTAGCTTCACTTTCTATCTACCGGTTCCTCACCCTCTCGTACTCGT
GTCTATTATTACCTATTTAATCACCTTGACAATGCGCTCAAACAACGTCTCCAACCCAACGCCGT
GAGCATGCTCAAAGATTGGCTGGATGGTGGCAAGCTCCACCGGTTTCGGCGCCTGCAAGCCGCCG
TCAGCGGGCTCGGGAGCCGCGTCGCCACCGCGGGTCACCGCAGGACCCGTCACCCTCAGGGCAAT
GATGTCCGCCGTCACCTGCGCCAGGAGCACCATCTGGGCCATGTCGTCCGCCAACAGCTTCGCGT
GCGAGCCCTGGTCGGCATCACGCGTCAACACCCCGATGCGGGAGT
Found at i:61138 original size:20 final size:20
Alignment explanation
Indices: 61087--61140 Score: 56
Period size: 20 Copynumber: 2.8 Consensus size: 20
61077 GAAACGGGAA
*
61087 TGGG-GACCTTGGGAGACCC
1 TGGGAGACCTTGGGAAACCC
* * * *
61106 TGAGAAACATTGGGAAATCC
1 TGGGAGACCTTGGGAAACCC
61126 TGGGAGACCTTGGGA
1 TGGGAGACCTTGGGA
61141 GATCATGGAG
Statistics
Matches: 26, Mismatches: 8, Indels: 1
0.74 0.23 0.03
Matches are distributed among these distances:
19 3 0.12
20 23 0.88
ACGTcount: A:0.26, C:0.19, G:0.37, T:0.19
Consensus pattern (20 bp):
TGGGAGACCTTGGGAAACCC
Left flanking sequence: Indices 60587 -- 61086
ACCGTCGGGCAGGTAGAGCAGCGAGCCCAACAACGCGTGCGGCATGTGGTGCGGCCCGCCATGCG
AGGCCATCGAAGCACTCCAACTCATCAATCACGTAGTGGTGGTGCAGCTAACCTAGCTTCGTTCT
TAGGCACCGGGTTCGCGATGAGGTCACGTGCGCGCACTGGCCTAAAGCGTTTTTTCAACACCAAC
AAAACCACCACAATGATCATCCCCATCAGATGCTTTTCGTGCGGTAAGGTGGTCGGCGACAAGTG
GGAGACGTACTTGGAGTACTTGCAGGACGAGCTGATGACCGAGGGCGATGCTCTTGACAAGCTCA
AGTTGAAACGGTACTGCTGCCGGCGCATGGTGTTGACCCACGTCGACTTGATCGAGAAGTTCTTG
CGGTACAACCCGCTTGAGAAGAAGGAGATTAACTAACGATTTGTACATTAATGGGATATAATTAA
GGGTTTTTGTAGGGGGAGTGAAGGGAGAGGTGATTGAAACGGGAA
Right flanking sequence: Indices 61141 -- 61640
GATCATGGAGTGTACCGCACTCAATCGATGAGACGCTGTGATTGTCCAAAGAAGATACTGCTGTT
TAGCGGAGAAACGACAGTCCAATCACTGCTTAGGTCAGTGCCCTCTAGTCATTACGGCGTGGCTT
AGATCAGGTGGGCCGGGTTTGGTGCGACCAAACGGCAGGATAGGGCCTGGCAACGTAAACTCGCA
ACTAAACCAATTGCTAGTAGGCTCCACTGACTCATCTCGTATTTGTGCCACACCGAAACCAGCCG
TTTCGAGCCTAGCGCTAGTTAGCGGCTATTACTTTATAGATGTCAATCCCATCATATGAATGGCA
AATGACCGAGCAAAGTCTCACACTTTTCATACTAACACACGCCAATTGACCAAACTCACTTACCC
ACCCCTCTCGCCATCATCTTCCATCCATCTTCCATCTTTCCCCTGGCTTCTCCGCTTACGTCATC
ACTGCTCGCGAGGTGAAAAATTCCCTCTGTCACCATTTCCACCAC
Found at i:63849 original size:15 final size:15
Alignment explanation
Indices: 63829--63858 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
63819 GAGGGTGGTG
63829 ACACAGACTGGTAGT
1 ACACAGACTGGTAGT
63844 ACACAGACTGGTAGT
1 ACACAGACTGGTAGT
63859 TTGTTGACAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.33, C:0.20, G:0.27, T:0.20
Consensus pattern (15 bp):
ACACAGACTGGTAGT
Left flanking sequence: Indices 63329 -- 63828
TCGAGCAGGCCGACGCCGCCACCCTCTCTGAGGGCGAGGAGGTCACCTTCATGGACTGGGGTAAC
GTCATCATTGGCAAGATCACCAAGTCTGGCGACAAGGTCACCAACATCGACGCCAAGTTGCACCT
CGAGGGTGACTTCCGCAAGACCTCGAAGAAGCTCACCTGGTTGGCCGACACCCCTGACAAGACCA
CCGTCGAGCTTGTGGACTTTGACCACTTGATCACCAAGGACAAGTTGGAGGAGGGCGACAACTTC
GAGGACTTCATCACCAAGGACACCATGTTTGCCACCCCTGCGTTGGCGGACTTGAACGTCAAGCA
GTTGAAGGAGGGCGACGTGATCCAGTTCGAGCGTAAGGGCTACTACAGAGTCGACCAGCAGGGCG
ACAAGACTGTGTTGTTCTCGATCCCCGACGGGAAGAACGCCCCCAAGAAGTAGGTAGTTTAGTAG
AGAAGATGCACAGATAAAAAGATGTGGTGTAGACTGAGGGTGGTG
Right flanking sequence: Indices 63859 -- 64358
TTGTTGACAATCGTCCTTGGTTGTGTTTGGTTTGGCTAGGCTTTTATTGATCGCAAAAGACTTTC
CTTATGGGTCACAGATTACCCAATCGGGACAACTCGGTTTGACTTAAGCTTTCACGGATCGAGTG
TGCCTTCCGTGGACCCTTGCGAGGGGTAGCTGCATTGTTCCAGACCGTTGATGAGTCCAACGGTC
GCATCGCACCGTGGCGGTGGAACCATCGAAGGTAGGTGGGAAATACGTACAGCGTATGAGGCACC
ACACAGTAGTCACATTTGTACACTTCATTTGTACACTTGGTAGGGTGATTAAACAACACAATGTC
GCGTAAGCTTAACCAAACTGTTGTATTGCAACAGAGAATCCCCTACAATCACCTCTGCTCAAGCT
CTACAGTCACCACTGTTCAGGCCCTACAATCTCGACTGCTCAGGTCCACACTACACCATACGCGT
TAAGCTCTTCTAATCACACCCTATCCACCACTTCTTCCTAACGTT
Found at i:64149 original size:13 final size:13
Alignment explanation
Indices: 64131--64156 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
64121 ACAGTAGTCA
64131 CATTTGTACACTT
1 CATTTGTACACTT
64144 CATTTGTACACTT
1 CATTTGTACACTT
64157 GGTAGGGTGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.23, G:0.08, T:0.46
Consensus pattern (13 bp):
CATTTGTACACTT
Left flanking sequence: Indices 63631 -- 64130
TTGGCGGACTTGAACGTCAAGCAGTTGAAGGAGGGCGACGTGATCCAGTTCGAGCGTAAGGGCTA
CTACAGAGTCGACCAGCAGGGCGACAAGACTGTGTTGTTCTCGATCCCCGACGGGAAGAACGCCC
CCAAGAAGTAGGTAGTTTAGTAGAGAAGATGCACAGATAAAAAGATGTGGTGTAGACTGAGGGTG
GTGACACAGACTGGTAGTACACAGACTGGTAGTTTGTTGACAATCGTCCTTGGTTGTGTTTGGTT
TGGCTAGGCTTTTATTGATCGCAAAAGACTTTCCTTATGGGTCACAGATTACCCAATCGGGACAA
CTCGGTTTGACTTAAGCTTTCACGGATCGAGTGTGCCTTCCGTGGACCCTTGCGAGGGGTAGCTG
CATTGTTCCAGACCGTTGATGAGTCCAACGGTCGCATCGCACCGTGGCGGTGGAACCATCGAAGG
TAGGTGGGAAATACGTACAGCGTATGAGGCACCACACAGTAGTCA
Right flanking sequence: Indices 64157 -- 64656
GGTAGGGTGATTAAACAACACAATGTCGCGTAAGCTTAACCAAACTGTTGTATTGCAACAGAGAA
TCCCCTACAATCACCTCTGCTCAAGCTCTACAGTCACCACTGTTCAGGCCCTACAATCTCGACTG
CTCAGGTCCACACTACACCATACGCGTTAAGCTCTTCTAATCACACCCTATCCACCACTTCTTCC
TAACGTTTATATTATAGTAGTACACCCAATAAACCTAACTCTTTTGCGTATAACCGTCGGCCTCC
GCCGAATATGTAAAACCAGATAAAAAATGCAACTGTCCCAAGTGTCACCACATCGACCCTGACCC
CCAGATCGACGTAGTCTTCAGCGTCGGTGTCGCCACCGGTGCCCCCCATGCCGTGGGCGACCCTG
CCAGGGTGTTGCATCCCAGAGAGGCAAAAATCAGCGGGGATTGCAAAAACGCCGGAGCGGCGGGG
GGCAGCGCCAGCTCCTGTTTGAGGGGGCTCTGTGACAAAAAGAGG
Found at i:64291 original size:23 final size:23
Alignment explanation
Indices: 64224--64292 Score: 75
Period size: 23 Copynumber: 3.0 Consensus size: 23
64214 ACAGAGAATC
* *
64224 CCCTACAATCACCTCTGCTCAAG
1 CCCTACAATCACCACTGCTCAGG
* * *
64247 CTCTACAGTCACCACTGTTCAGG
1 CCCTACAATCACCACTGCTCAGG
* *
64270 CCCTACAATCTCGACTGCTCAGG
1 CCCTACAATCACCACTGCTCAGG
64293 TCCACACTAC
Statistics
Matches: 36, Mismatches: 10, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
23 36 1.00
ACGTcount: A:0.23, C:0.39, G:0.14, T:0.23
Consensus pattern (23 bp):
CCCTACAATCACCACTGCTCAGG
Left flanking sequence: Indices 63724 -- 64223
ACTGTGTTGTTCTCGATCCCCGACGGGAAGAACGCCCCCAAGAAGTAGGTAGTTTAGTAGAGAAG
ATGCACAGATAAAAAGATGTGGTGTAGACTGAGGGTGGTGACACAGACTGGTAGTACACAGACTG
GTAGTTTGTTGACAATCGTCCTTGGTTGTGTTTGGTTTGGCTAGGCTTTTATTGATCGCAAAAGA
CTTTCCTTATGGGTCACAGATTACCCAATCGGGACAACTCGGTTTGACTTAAGCTTTCACGGATC
GAGTGTGCCTTCCGTGGACCCTTGCGAGGGGTAGCTGCATTGTTCCAGACCGTTGATGAGTCCAA
CGGTCGCATCGCACCGTGGCGGTGGAACCATCGAAGGTAGGTGGGAAATACGTACAGCGTATGAG
GCACCACACAGTAGTCACATTTGTACACTTCATTTGTACACTTGGTAGGGTGATTAAACAACACA
ATGTCGCGTAAGCTTAACCAAACTGTTGTATTGCAACAGAGAATC
Right flanking sequence: Indices 64293 -- 64792
TCCACACTACACCATACGCGTTAAGCTCTTCTAATCACACCCTATCCACCACTTCTTCCTAACGT
TTATATTATAGTAGTACACCCAATAAACCTAACTCTTTTGCGTATAACCGTCGGCCTCCGCCGAA
TATGTAAAACCAGATAAAAAATGCAACTGTCCCAAGTGTCACCACATCGACCCTGACCCCCAGAT
CGACGTAGTCTTCAGCGTCGGTGTCGCCACCGGTGCCCCCCATGCCGTGGGCGACCCTGCCAGGG
TGTTGCATCCCAGAGAGGCAAAAATCAGCGGGGATTGCAAAAACGCCGGAGCGGCGGGGGGCAGC
GCCAGCTCCTGTTTGAGGGGGCTCTGTGACAAAAAGAGGTTGGGAGGGGACGGGCCCTTTAGCGG
CGGCGGCAACGAGATCGGCAGCCCCACGTCGTACACCGCGAGCGGCTGCGGCTGCAGAAGCCCGG
GGTAGGTCTTGCCGTTTTGGGGCTGGGTGGTCTGACCCATGCTCG
Found at i:65998 original size:14 final size:14
Alignment explanation
Indices: 65979--66008 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
65969 CATACCCGTC
*
65979 GTACACACCTCGCA
1 GTACACAACTCGCA
65993 GTACACAACTCGCA
1 GTACACAACTCGCA
66007 GT
1 GT
66009 CTCCCTGGTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.30, C:0.37, G:0.17, T:0.17
Consensus pattern (14 bp):
GTACACAACTCGCA
Left flanking sequence: Indices 65479 -- 65978
GGGGTAGACGAGTGTCAACCGTACAGATGGGACGAGAAGGATGGAAGGGGTGGTGGAAGGGGCTG
ATTCGGAGGGATCGGGTAAACTTACGTTGATTACGAGCTTAGGGCCTGGTTTAGGGGCTCTTCTT
GTTTGTTTGTGTATCCAGACGCGTGGTTTATGCGTAGATGGCATGTGTTCTGTACAGACTGGCAG
GCACTACTGGGCTCTAGTCCAGGTTGGGGTACGTGGCACTAGCCTATTTATCTCGCGTCTAGTTT
CATGTGACACGTACGTGGGACACGTAGTAATTGTAATCAGTGCGAAGGGTCCGGGTGGGATCAGG
GTGGGTCTCTGGTGGGTTCATTGTGTGCTGAAACGAATGAACCCGGACACAGTCGAAACAAACAC
TGTTACAGAACAGAACGAGTTAGAAACTCAGGTACAAAACGCGTCTGGATATCAGTAACCACTAG
TCGTGTCTCCACGACACATGACACTAAATGTCTCCCATACCCGTC
Right flanking sequence: Indices 66009 -- 66508
CTCCCTGGTTCGATTTCAACTTCGCAACGCACCAACCCCTTAGCTCCACCAACTACACGTCCTAA
TCCTGGGCTATGCCCCCCTGTATGAATAAATAAATAGTCTAGTGCTTGCGCGGGTTCTCCACCCA
CTCCGTCAGCGACATCTGCGACAACCGCAGCAACGCCCGGGCAAAGGCAAACTTTTCCTCGTCGT
TGGCAAACATCGCCGCCTTTTTCGCCACGTCCTTCGAGAACCCGTGCTTGGTGACCAACTCGTCG
TCGTCAAACGTCGCCTCCTCGCCCGTCTCCTTGTGGTGTTTGTACAACTGGTAGTTGCCCTTGGC
GATGTCCTCGGGCTCCACAAACAAGTCCTTGAACGGGGCGGCGGTGGTGCATGCCATGCGCCCGT
GGGCGTCGTACACGGCGTCTAGAAACGTGATGAACCGCCGCACCCACTCGCGTGAGTCAATCAGA
AGGTAGGGGATATCCGTGATCACGAACAGCTGGTAGGCGTTGGCG
Found at i:68270 original size:13 final size:13
Alignment explanation
Indices: 68252--68284 Score: 66
Period size: 13 Copynumber: 2.5 Consensus size: 13
68242 TATAAGGGGT
68252 CTAGTGGCCGTGA
1 CTAGTGGCCGTGA
68265 CTAGTGGCCGTGA
1 CTAGTGGCCGTGA
68278 CTAGTGG
1 CTAGTGG
68285 ACGCACTATA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.15, C:0.21, G:0.39, T:0.24
Consensus pattern (13 bp):
CTAGTGGCCGTGA
Left flanking sequence: Indices 67752 -- 68251
TTGCTACTGGAGTCGTCACCTTTTTTACGAGCCGTCGAAAAAGTATATATTTAGTCCGGGGTAGC
GATGGCGGCGAGATACCGCGGGATTGGCGGGTGGAGGGGCGCTCGGGGTGCTCGGTTAAGCTTTG
GCGGGGTGGGTAGGGGGCTTTTGGCTGGTGTCGGGCCGGTTGGGTGGTTTCACATGAGCCTGGTG
TGGGAGCTGGCAAAAGAGGGGAGATAGCGTGGGGGGACCGGTAGAGGTGGGGTTTGGTGGGATGG
CAGTAGAGAACGGGGTACAAAAACAAGCGGGATGGGGTTTGTGCGTGTGTCTTATATTGCTGGAG
GTGTTTTGATCGTGTGGTCTCCACGCTGGGCCGCGATGGGTGGCTTTGTCGGCTAGTCTGGGGTA
GTCGGACGAGCGGAAACGGTGGATCAAATGGCTAGCACGGCAAAGGTAATGGGAAAGATAAAGAG
GATAAGAGATGGAGTGCGTCTGATTTTAAGTAATCTATAAGGGGT
Right flanking sequence: Indices 68285 -- 68784
ACGCACTATATAGACGCCGCCCATGGTGAAACGCCAAGTCAACACGTTTCCTACCCAACAAAAGA
AACTCTTGGTGGAACGTAGTAGTGGATTTGGACAGGCTCATGAAATATACTACTTCGTTTCACGC
CTGGAAGCCCGTTTCGTTTCAAGAGTGCATTATCTCTGGTGGGCCTCGTTGACTGGCTGACAGAC
TGTCACTTCTCGGCTTGGCAATAAACCGTAAATGTCTCACTGTCGCGACACCCGACCGAAGCGAG
CTTCGATGGGGCCTTTGGCTCCGATTAAATCCTTGGCTACGAAGGGAGCCTTGGCTCCGATGGAA
TCCTTGTTGGAGATCGACATCGATCGTGCCAAGCGCTTGGCAGGAACCGTCTTGGTGTCACCGCC
TCTGTACTATGGCTCCGCTTACACTTGTCTATCTAACTCTTATCTTTAGACGGGCTCGCACTGTG
GCTCAATGACGACCCGCCAACTAATTATAGCCGGTCACGCTAGAC
Found at i:68614 original size:18 final size:18
Alignment explanation
Indices: 68559--68615 Score: 60
Period size: 18 Copynumber: 3.2 Consensus size: 18
68549 GATGGGGCCT
**
68559 TTGGCTCCGATTAAATCC
1 TTGGCTCCGATGGAATCC
* * * *
68577 TTGGCTACGAAGGGAGCC
1 TTGGCTCCGATGGAATCC
68595 TTGGCTCCGATGGAATCC
1 TTGGCTCCGATGGAATCC
68613 TTG
1 TTG
68616 TTGGAGATCG
Statistics
Matches: 29, Mismatches: 10, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
18 29 1.00
ACGTcount: A:0.19, C:0.25, G:0.28, T:0.28
Consensus pattern (18 bp):
TTGGCTCCGATGGAATCC
Left flanking sequence: Indices 68059 -- 68558
TGTCTTATATTGCTGGAGGTGTTTTGATCGTGTGGTCTCCACGCTGGGCCGCGATGGGTGGCTTT
GTCGGCTAGTCTGGGGTAGTCGGACGAGCGGAAACGGTGGATCAAATGGCTAGCACGGCAAAGGT
AATGGGAAAGATAAAGAGGATAAGAGATGGAGTGCGTCTGATTTTAAGTAATCTATAAGGGGTCT
AGTGGCCGTGACTAGTGGCCGTGACTAGTGGACGCACTATATAGACGCCGCCCATGGTGAAACGC
CAAGTCAACACGTTTCCTACCCAACAAAAGAAACTCTTGGTGGAACGTAGTAGTGGATTTGGACA
GGCTCATGAAATATACTACTTCGTTTCACGCCTGGAAGCCCGTTTCGTTTCAAGAGTGCATTATC
TCTGGTGGGCCTCGTTGACTGGCTGACAGACTGTCACTTCTCGGCTTGGCAATAAACCGTAAATG
TCTCACTGTCGCGACACCCGACCGAAGCGAGCTTCGATGGGGCCT
Right flanking sequence: Indices 68616 -- 69115
TTGGAGATCGACATCGATCGTGCCAAGCGCTTGGCAGGAACCGTCTTGGTGTCACCGCCTCTGTA
CTATGGCTCCGCTTACACTTGTCTATCTAACTCTTATCTTTAGACGGGCTCGCACTGTGGCTCAA
TGACGACCCGCCAACTAATTATAGCCGGTCACGCTAGACCCAGCACAAGCACAATACGTCCTTGG
CAGGCACAATACGGTACGGGGCTCACGGATACGTGCATAGCTAGACGATACAACGGGACAACTAT
TCCCGGATTGTGTCACTTCCTGACCCCACATTGGCTGAGACCCGCTGCGCCTCGCTAGATCGCAC
CACTAACCGGTTTGTGCTGAGACAATGCGTAGACACATACCGCGTCTGAGGCGACCAATCGCCGT
AAATGGTGGGGTCTCGCCCCTAGCCGGGAATGTGCCCTACTCGTAGAAATGCTTCGTTGACGACG
GTTAGTGCCACTAGTCCATTGCTGGCCCGGCGACACCACGTTGGA
Found at i:70277 original size:12 final size:12
Alignment explanation
Indices: 70260--70292 Score: 66
Period size: 12 Copynumber: 2.8 Consensus size: 12
70250 ATGAGCCATG
70260 ACGACGACGAGT
1 ACGACGACGAGT
70272 ACGACGACGAGT
1 ACGACGACGAGT
70284 ACGACGACG
1 ACGACGACG
70293 CAAAGCACAG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.33, C:0.27, G:0.33, T:0.06
Consensus pattern (12 bp):
ACGACGACGAGT
Left flanking sequence: Indices 69760 -- 70259
GTGTTGCCGGAGACGACGCGATCCGCGGCCGGGTGCTGCGGGGTGACCGGCGCCCCAGCCACGTC
GGGTTCGGTCTACACCTTCTCTGTCTCTAACAACGCACCACCAGCCACCGTCGTATTCTCCCATT
TACGCAGTCTAGCCCGCCCTCCGAATCACCCTCCTTTGTATTGCTGCAGGTTTTGTTGGTGAAAT
TCCTGCACAGACCCATGCAGGCGCGGTTGCTCGAGCGCGACCTGCCACCATCGGCGAAAAACTAC
AAACAAAAGCGATAGCATCTGCTTGCTGTCAGCACCAAATGGCGTCGGTTGACAACTACTACGAC
ATATGTGTCAACTCCAAGACCCGCAGCCACAAGCCGGCGACGATGAAGCGCGCGCAAACCGTGAC
CAACTCGCGTCCGCTGGACTACTACATCAAAAAGTTGCTGAACTGCCTGCTATCGGACGAGCTGG
AGCAGCTGCTGACCACGGGGACGCGGTTCCTGTTGATGAGCCATG
Right flanking sequence: Indices 70293 -- 70792
CAAAGCACAGCCCCGACCTCATGTTCAAAGTGGCGCCACCGGAGCCCTCCCTGGCCGAGCAGGCC
AACCCGCTACAAATCCACCCCAGGCTCCAACGTCACGCGCTGATGCCGGCGCTCCGCCACACCCT
GACGCTGTCGCTGCTGTCGCTGGGCCCTCCCACGCTCACCCGCACCAAGACCCGCTACGTGCTGA
TGCGCGAGCTGAAGGAGCGCAAGGAGGCGCGCAAAAAGAAGTACGACGAGGACGACGGCGACGAC
GTGATCCTCGAGGACCACCAGCTCTTCAACGTGCCGATGTTGCGCAACTTTGGCGACCTCTACAA
GAACGCCCACGACTTTGTCGACACCATCACCCTGGACAACAAATACCCCGCTCCCATGCGCCCGT
GCCCGTTGCCGGGCAAGCTCGACCTGGGCGAGCTGCTGCCCAACCTGCTGATGATGCTGATGCTG
CTGTTTACCGGCACCCCGTTGCACAACATCGAGGAGGACCTGGAC
Found at i:72267 original size:30 final size:30
Alignment explanation
Indices: 72226--72289 Score: 92
Period size: 30 Copynumber: 2.1 Consensus size: 30
72216 AAAGGGGGGA
* *
72226 GGGAAGAAGGTGTAGAATGAGAGGAAAGGT
1 GGGAAGAAGGTGTAGAAGGAGAGCAAAGGT
* *
72256 GGGATGAAGGTGTAGAAGGGGAGCAAAGGT
1 GGGAAGAAGGTGTAGAAGGAGAGCAAAGGT
72286 GGGA
1 GGGA
72290 CAGAGAAAGG
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.36, C:0.02, G:0.50, T:0.12
Consensus pattern (30 bp):
GGGAAGAAGGTGTAGAAGGAGAGCAAAGGT
Left flanking sequence: Indices 71726 -- 72225
CTGGAGTTTGACGGGTTCAACGCCACCCACTACTTTGAGGTGCTCTGCCAGATCAACGACCTGCT
TCCGTTGCCGCTGAGTGCGCCGCTGACGCCCGTGGTGGGTGGGGCGCCCTTCAACTTTAGCGCGG
AGCACTTGGCACACCCCGAGCTGGGCGACGACATCGATCTGGCGCTGTTGCAGTTGATGGTCAAG
TTGATGCAAAACCTCATTGTGTATGCCCACTCGCCGAAAACCCGCACCAAAAACAATCTCAAGGT
GGTGCAAACGTTTATGGTGGTGCTCGTGCTGTACTACCACATCAACTGGAACCTGTACACCGACT
TGGTGCGCCACAACCGCTCGATCAAATTGAACAACACCCTGGACAAGACCCAGGTGTTGGAGCTG
TTTGCGGAAAAATGGCGCCAGTTGTTCAAAAAGTAACCTGCATTTCATTTCATTTAATATTCATT
TGGGTCTATAGAGTAATCTATGGTTAGGACGGTTGAAAGGGGGGA
Right flanking sequence: Indices 72290 -- 72789
CAGAGAAAGGTGTAAAGTGAGACAAGTGTAGAGGAAGAAAAGGTGGGAGAGGCACGGGTGTAAAC
GGGACTGGTGAGACAAAGGTAGAAGAAACTGGTGAGGCAAAGGTATAATGGGAATTGGCTAGTGT
TTGGGCGTGTAGAAGGACTGGTGAAGGCACTGGTGTGTACTTTGCACAATCACTACGATTGAGAT
ACTTTTCCAATTCACGCGCTATTCCAATCGCTAATCCACTGCCCAAAGGGTATTTCCCTGGTTCT
CTGGCCCTGTTGTACCGTCTGAACACCTTTCTTACGCGCTAGAGCCCCGTTTCACCCACTACGTT
GGGACCTTGTTTCCCCGATATTTGTGTCCTGCATACAAGCTGGCTGCAAATTGTATAATACATCT
ATAACTAGTCCATATCGATCTCTATCTGGTTCGGGTTGATTTTGGTCGGCTGGGCCATCGCCTTA
ACGAACCCCATCGCCTTGTTCTCCTCCAACAACTGCTGCTTGTCT
Found at i:77072 original size:22 final size:22
Alignment explanation
Indices: 77032--77078 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
77022 ATGAGTATTG
**
77032 AGTGGTCAACTAGTTGTCTACT
1 AGTGGTCAACTAGAGGTCTACT
* *
77054 AGTGGTCAACTGGAGGTCTTCT
1 AGTGGTCAACTAGAGGTCTACT
77076 AGT
1 AGT
77079 CTACTGGTGG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.21, C:0.17, G:0.28, T:0.34
Consensus pattern (22 bp):
AGTGGTCAACTAGAGGTCTACT
Left flanking sequence: Indices 76532 -- 77031
AGATGTTTACAAACACTAAGAAAAATAGGAAGGGGGAGTGAAAAACAGCAGTGTGGATGGTCTCA
GCGATGAGCGCCGGTGGAAAACCTCAGAAACCGGTTAACCACTTCTACGCTCACTCCTGCTTGGT
CAGCTACGCTCGTTGTTCTCACAATGGCCATTATCCTGGGCTACCCCTTACTCTCACGTCACAGT
TGCATTAGCCTGCAACAAACCAAAACATCCTAATCAGACCAATGCGAGCCCGGATGCAAGTAAAC
ACGCCGTTGTATGTGGCCCGTTACGGTTGACGAGCGGTCAATCCCGCTTCATGCCGAGAGATGAA
ATACGATGGGAAGGTGATCTGAGGCGCTCACCCACGGGACAAAGCGACCCCGCGAAATAAAATTA
CAAAAAAGCTAAGAGTCGTGTGGCAGGTGGACTTGCAAGGCGACGAGTTGAACCAAAATGCCATA
CCTATGACCTATAGGTATCGTTGATAGTACCGTTGATGAGTATTG
Right flanking sequence: Indices 77079 -- 77578
CTACTGGTGGTCTACTAGTCTACTGGTCGGCTAATAGTGGTCTACTAATACCCACAAGCTTTGCC
GTCATCAACCATCATCTTCCATAGCATCACATCCCTCATTCCCCATTCTTTATCCCCTTTAGCTC
GCCTTCCTTCATTCTCTCCACAAGCCGCACGCTCCCTGCAGGTTGCTCGCGTTTCAACCAATAGA
TTTTCAACCGAAAAACTCGTAAGCAGACCCGAACCATGTTGTCCAGAGTCGTTGGTAGACAAGCG
CGCACGTTCACCACCACTGCGGCGCGGTTCAACGCCCCCGAGTACCTCATTGACCAGACCAAGCA
GAAACTCGTGATCAACGACAAGCCCAACGAGATTGTGTCCGGGGCCCCCAAGGAGTTGGTCACCG
CGAGAACGGTGAGAATCTACAAAGAGTGCAAGCCTGCCACCCAGCTGGGCACCCGCAACGCCGAC
TTTTGGAAGTTGGACTGGGACGTGTTGGGTTCTGGCAACCGGTGG
Found at i:77090 original size:19 final size:19
Alignment explanation
Indices: 77062--77105 Score: 70
Period size: 19 Copynumber: 2.3 Consensus size: 19
77052 CTAGTGGTCA
* *
77062 ACTGGAGGTCTTCTAGTCT
1 ACTGGTGGTCTACTAGTCT
77081 ACTGGTGGTCTACTAGTCT
1 ACTGGTGGTCTACTAGTCT
77100 ACTGGT
1 ACTGGT
77106 CGGCTAATAG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.16, C:0.20, G:0.27, T:0.36
Consensus pattern (19 bp):
ACTGGTGGTCTACTAGTCT
Left flanking sequence: Indices 76562 -- 77061
AGGGGGAGTGAAAAACAGCAGTGTGGATGGTCTCAGCGATGAGCGCCGGTGGAAAACCTCAGAAA
CCGGTTAACCACTTCTACGCTCACTCCTGCTTGGTCAGCTACGCTCGTTGTTCTCACAATGGCCA
TTATCCTGGGCTACCCCTTACTCTCACGTCACAGTTGCATTAGCCTGCAACAAACCAAAACATCC
TAATCAGACCAATGCGAGCCCGGATGCAAGTAAACACGCCGTTGTATGTGGCCCGTTACGGTTGA
CGAGCGGTCAATCCCGCTTCATGCCGAGAGATGAAATACGATGGGAAGGTGATCTGAGGCGCTCA
CCCACGGGACAAAGCGACCCCGCGAAATAAAATTACAAAAAAGCTAAGAGTCGTGTGGCAGGTGG
ACTTGCAAGGCGACGAGTTGAACCAAAATGCCATACCTATGACCTATAGGTATCGTTGATAGTAC
CGTTGATGAGTATTGAGTGGTCAACTAGTTGTCTACTAGTGGTCA
Right flanking sequence: Indices 77106 -- 77605
CGGCTAATAGTGGTCTACTAATACCCACAAGCTTTGCCGTCATCAACCATCATCTTCCATAGCAT
CACATCCCTCATTCCCCATTCTTTATCCCCTTTAGCTCGCCTTCCTTCATTCTCTCCACAAGCCG
CACGCTCCCTGCAGGTTGCTCGCGTTTCAACCAATAGATTTTCAACCGAAAAACTCGTAAGCAGA
CCCGAACCATGTTGTCCAGAGTCGTTGGTAGACAAGCGCGCACGTTCACCACCACTGCGGCGCGG
TTCAACGCCCCCGAGTACCTCATTGACCAGACCAAGCAGAAACTCGTGATCAACGACAAGCCCAA
CGAGATTGTGTCCGGGGCCCCCAAGGAGTTGGTCACCGCGAGAACGGTGAGAATCTACAAAGAGT
GCAAGCCTGCCACCCAGCTGGGCACCCGCAACGCCGACTTTTGGAAGTTGGACTGGGACGTGTTG
GGTTCTGGCAACCGGTGGGAGAACGACTTGATCGGCTACCAAGCG
Found at i:77116 original size:19 final size:19
Alignment explanation
Indices: 77075--77116 Score: 59
Period size: 19 Copynumber: 2.2 Consensus size: 19
77065 GGAGGTCTTC
*
77075 TAGTCTACTGGTGGTCTAC
1 TAGTCTACTGGTGGTCTAA
77094 TAGTCTACTGGTCGG-CTAA
1 TAGTCTACTGGT-GGTCTAA
77113 TAGT
1 TAGT
77117 GGTCTACTAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 19 0.90
20 2 0.10
ACGTcount: A:0.19, C:0.19, G:0.26, T:0.36
Consensus pattern (19 bp):
TAGTCTACTGGTGGTCTAA
Left flanking sequence: Indices 76575 -- 77074
AACAGCAGTGTGGATGGTCTCAGCGATGAGCGCCGGTGGAAAACCTCAGAAACCGGTTAACCACT
TCTACGCTCACTCCTGCTTGGTCAGCTACGCTCGTTGTTCTCACAATGGCCATTATCCTGGGCTA
CCCCTTACTCTCACGTCACAGTTGCATTAGCCTGCAACAAACCAAAACATCCTAATCAGACCAAT
GCGAGCCCGGATGCAAGTAAACACGCCGTTGTATGTGGCCCGTTACGGTTGACGAGCGGTCAATC
CCGCTTCATGCCGAGAGATGAAATACGATGGGAAGGTGATCTGAGGCGCTCACCCACGGGACAAA
GCGACCCCGCGAAATAAAATTACAAAAAAGCTAAGAGTCGTGTGGCAGGTGGACTTGCAAGGCGA
CGAGTTGAACCAAAATGCCATACCTATGACCTATAGGTATCGTTGATAGTACCGTTGATGAGTAT
TGAGTGGTCAACTAGTTGTCTACTAGTGGTCAACTGGAGGTCTTC
Right flanking sequence: Indices 77117 -- 77616
GGTCTACTAATACCCACAAGCTTTGCCGTCATCAACCATCATCTTCCATAGCATCACATCCCTCA
TTCCCCATTCTTTATCCCCTTTAGCTCGCCTTCCTTCATTCTCTCCACAAGCCGCACGCTCCCTG
CAGGTTGCTCGCGTTTCAACCAATAGATTTTCAACCGAAAAACTCGTAAGCAGACCCGAACCATG
TTGTCCAGAGTCGTTGGTAGACAAGCGCGCACGTTCACCACCACTGCGGCGCGGTTCAACGCCCC
CGAGTACCTCATTGACCAGACCAAGCAGAAACTCGTGATCAACGACAAGCCCAACGAGATTGTGT
CCGGGGCCCCCAAGGAGTTGGTCACCGCGAGAACGGTGAGAATCTACAAAGAGTGCAAGCCTGCC
ACCCAGCTGGGCACCCGCAACGCCGACTTTTGGAAGTTGGACTGGGACGTGTTGGGTTCTGGCAA
CCGGTGGGAGAACGACTTGATCGGCTACCAAGCGTCGGCCGACTA
Found at i:77859 original size:8 final size:8
Alignment explanation
Indices: 77846--77896 Score: 75
Period size: 8 Copynumber: 6.0 Consensus size: 8
77836 GGAGAAGTAG
77846 GTGAAGGT
1 GTGAAGGT
77854 GTGAAGGT
1 GTGAAGGT
77862 GTGAAGGT
1 GTGAAGGT
77870 GTGAAGGTT
1 GTGAAGG-T
77879 GTATGAAGGT
1 G--TGAAGGT
77889 GTGAAGGT
1 GTGAAGGT
77897 TAAATAAAGG
Statistics
Matches: 40, Mismatches: 0, Indels: 6
0.87 0.00 0.13
Matches are distributed among these distances:
8 30 0.75
9 2 0.05
10 2 0.05
11 6 0.15
ACGTcount: A:0.25, C:0.00, G:0.47, T:0.27
Consensus pattern (8 bp):
GTGAAGGT
Left flanking sequence: Indices 77346 -- 77845
TCACCACCACTGCGGCGCGGTTCAACGCCCCCGAGTACCTCATTGACCAGACCAAGCAGAAACTC
GTGATCAACGACAAGCCCAACGAGATTGTGTCCGGGGCCCCCAAGGAGTTGGTCACCGCGAGAAC
GGTGAGAATCTACAAAGAGTGCAAGCCTGCCACCCAGCTGGGCACCCGCAACGCCGACTTTTGGA
AGTTGGACTGGGACGTGTTGGGTTCTGGCAACCGGTGGGAGAACGACTTGATCGGCTACCAAGCG
TCGGCCGACTACATGCAGGGGACGGTGATGAAGTTTGACACCCAGGAGCTGGCGGTGGCGTTTGC
CCAGGGCCAGGGGTGGGAGTACTACGTGCAGGAGCCTAACAAGAAGAGATTCCGCAAGAAGGAGT
ACGCCGCCAACTTCTACCACATTCCTGGTAAGTTGAAGCACATTAGAACGAAGTAGGGACACAGC
ATCATAGATAATAAAGGAAGGAAAAGGATGGTAGAGGAGAAGTAG
Right flanking sequence: Indices 77897 -- 78396
TAAATAAAGGTGTGATGACGGTCAAATAATGATTTAGAGGTGTTGAATCTGTGGGTGAGTTTGAG
CCTTAGCTGGTTTCGAGCCCACGGCTTGAGAACAGATGATGTAGATCTAGGTGGGGAGGGTGGAG
GTGAGGATTGCACGTGTGTGATGGTCGCTCTGTCGCTGAGTAGTGTAATTGAGTACATGGGGTTA
CCAAACCACCGATAGGGGTACGCGTGGTGGCTTGTCTTGACCACCGCTTCAAAGAGGCATTGACT
CGACTTCTCCGTCTGGATAGCCTAGAACCGCGTTCAAAACGCTGATTCGATCCTCTTTGTAACTA
AGCTGTCCAGTACTGTGCGTAAACATAGCCGTACCATCCAAGTGTCTCATGCATATCACCTTTAA
CTACCCATTGAGAATATTTATCCTTAAACAAGCATTTCTCTCCTCCCATTCGCACTCCTCTCCGT
TCCTTCCCATATTCCTATCCCATTCTCTCCCTACCCAGTCTTTCT
Found at i:77887 original size:19 final size:18
Alignment explanation
Indices: 77847--77911 Score: 80
Period size: 19 Copynumber: 3.6 Consensus size: 18
77837 GAGAAGTAGG
77847 TGAAGGTGTGAAGG-TG-
1 TGAAGGTGTGAAGGTTGA
77863 TGAAGGTGTGAAGGTTGTA
1 TGAAGGTGTGAAGGTTG-A
*
77882 TGAAGGTGTGAAGGTTAAA
1 TGAAGGTGTGAAGGTT-GA
*
77901 TAAAGGTGTGA
1 TGAAGGTGTGA
77912 TGACGGTCAA
Statistics
Matches: 43, Mismatches: 2, Indels: 5
0.86 0.04 0.10
Matches are distributed among these distances:
16 14 0.33
17 2 0.05
19 27 0.63
ACGTcount: A:0.31, C:0.00, G:0.42, T:0.28
Consensus pattern (18 bp):
TGAAGGTGTGAAGGTTGA
Left flanking sequence: Indices 77347 -- 77846
CACCACCACTGCGGCGCGGTTCAACGCCCCCGAGTACCTCATTGACCAGACCAAGCAGAAACTCG
TGATCAACGACAAGCCCAACGAGATTGTGTCCGGGGCCCCCAAGGAGTTGGTCACCGCGAGAACG
GTGAGAATCTACAAAGAGTGCAAGCCTGCCACCCAGCTGGGCACCCGCAACGCCGACTTTTGGAA
GTTGGACTGGGACGTGTTGGGTTCTGGCAACCGGTGGGAGAACGACTTGATCGGCTACCAAGCGT
CGGCCGACTACATGCAGGGGACGGTGATGAAGTTTGACACCCAGGAGCTGGCGGTGGCGTTTGCC
CAGGGCCAGGGGTGGGAGTACTACGTGCAGGAGCCTAACAAGAAGAGATTCCGCAAGAAGGAGTA
CGCCGCCAACTTCTACCACATTCCTGGTAAGTTGAAGCACATTAGAACGAAGTAGGGACACAGCA
TCATAGATAATAAAGGAAGGAAAAGGATGGTAGAGGAGAAGTAGG
Right flanking sequence: Indices 77912 -- 78411
TGACGGTCAAATAATGATTTAGAGGTGTTGAATCTGTGGGTGAGTTTGAGCCTTAGCTGGTTTCG
AGCCCACGGCTTGAGAACAGATGATGTAGATCTAGGTGGGGAGGGTGGAGGTGAGGATTGCACGT
GTGTGATGGTCGCTCTGTCGCTGAGTAGTGTAATTGAGTACATGGGGTTACCAAACCACCGATAG
GGGTACGCGTGGTGGCTTGTCTTGACCACCGCTTCAAAGAGGCATTGACTCGACTTCTCCGTCTG
GATAGCCTAGAACCGCGTTCAAAACGCTGATTCGATCCTCTTTGTAACTAAGCTGTCCAGTACTG
TGCGTAAACATAGCCGTACCATCCAAGTGTCTCATGCATATCACCTTTAACTACCCATTGAGAAT
ATTTATCCTTAAACAAGCATTTCTCTCCTCCCATTCGCACTCCTCTCCGTTCCTTCCCATATTCC
TATCCCATTCTCTCCCTACCCAGTCTTTCTCCTTTTCTCCCTGTA
Found at i:81838 original size:23 final size:23
Alignment explanation
Indices: 81752--81832 Score: 112
Period size: 22 Copynumber: 3.6 Consensus size: 23
81742 GTGGGAGGAA
*
81752 GAGGTGGAG-AGTGGTAGATACT
1 GAGGTGGAGAAGTGGTAGACACT
*
81774 GAGGTGGAG-AGTGGTAGAGACT
1 GAGGTGGAGAAGTGGTAGACACT
* *
81796 GAGATGGAGAAGTGGTAGACATT
1 GAGGTGGAGAAGTGGTAGACACT
81819 GAGGTGGAGAAGTG
1 GAGGTGGAGAAGTG
81833 ACAGACTAAA
Statistics
Matches: 53, Mismatches: 5, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
22 29 0.55
23 24 0.45
ACGTcount: A:0.30, C:0.04, G:0.47, T:0.20
Consensus pattern (23 bp):
GAGGTGGAGAAGTGGTAGACACT
Left flanking sequence: Indices 81252 -- 81751
GCTCGAGGCGATTGGGGCCAAGGAGATGATCATCGAGTATGTGGGCGAGCTGATCCGCCAGGCGG
TGGCCGAGGTGCGCGAGCGGGCGTACATGAAGACGGGGATCGGGTCGTCGTACTTGTTCCGGGTC
GACGAGAACACGGTGATCGACGCCACCCGCAAGGGCGGGATTGCGCGGTTTATTAACCACTGCTG
TCTGCCGCTGTGCACTGCCAAGATCATCAAGGTGGACGGGCGCAAGCGGATTGTGATATATGCGT
TGCGGGACATTGAGGCCAACGAGGAGCTTACTTATGACTACAAGTTTGAGCGCGACACCAACGAC
GACGAGCGGATCCGGTGTTTGTGTGGGGCCCCGGGGTGCAAGGGCTATCTTAATTAATAGAGTGG
ACTAATAGATACGATAAGAAGGTAGAGAGGTGTGGTGTGGTTGTAGGTACGTACCGTGGTATGGG
ATGTTGAATGGTTGGCGTGGGTTGGAGGGTTGGAAGTGGGAGGAA
Right flanking sequence: Indices 81833 -- 82332
ACAGACTAAATCATGGTGGCATGGGTTCGTGACCTAGAATTGTAGTAGAGGTAAACTGCTGGTTG
GCGGTGATTCAAGAGTGTGAGTTATCAGATGTTGGTGGCGTGGGTTTGAGTTGTGTGAGACATGA
TAGATACCAATGCTGGTGGCATGTGTTTGTGACTTATAATCGTAGTAGATATTGAATGCGGCTGG
CTTGGGTTTGGAGGCTTAGAGAAGGGATAGGCAACAATGCTGGTGACATGTGTTGTGATTTATAA
TCGTAGTAGATATTGAATGCTAGCTGGCGTGGGTTCGAGTGGTATAGAGAAGCGACAATTGTCAA
ATGCTGGTTGGCATCGGTTTGGGTGACATAAAGATGCAATAGACTGGTTAGCGTTGGGTTCTATA
AGAAAGTGGTAGATATTGAATGCTGGCTGGCATGGGTGTGGGTGTTCTAGTATGTCATAGATCAA
ACGCGGTTGGCTCAAGCTTGGGAACTAAGCCTGTGATAGACAATA
Found at i:82021 original size:46 final size:46
Alignment explanation
Indices: 81971--82113 Score: 107
Period size: 46 Copynumber: 3.1 Consensus size: 46
81961 GATAGATACC
81971 AATGCTGGTGGCATGTGTTTGTGACTTATAATCGTAGTAGATATTG
1 AATGCTGGTGGCATGTGTTTGTGACTTATAATCGTAGTAGATATTG
* * * ** * ** **
82017 AATGC-GGCTGGCTTGGGTTTG-GAGGCTTAGAGAAGGGA-TAGGCA-AC
1 AATGCTGG-TGGCATGTGTTTGTGA--CTTATA-ATCGTAGTAGATATTG
* *
82063 AATGCTGGTGACATGTG-TTGTGATTTATAATCGTAGTAGATATTG
1 AATGCTGGTGGCATGTGTTTGTGACTTATAATCGTAGTAGATATTG
82108 AATGCT
1 AATGCT
82114 AGCTGGCGTG
Statistics
Matches: 67, Mismatches: 22, Indels: 17
0.63 0.21 0.16
Matches are distributed among these distances:
43 3 0.04
44 8 0.12
45 13 0.19
46 29 0.43
47 11 0.16
48 3 0.04
ACGTcount: A:0.25, C:0.10, G:0.31, T:0.34
Consensus pattern (46 bp):
AATGCTGGTGGCATGTGTTTGTGACTTATAATCGTAGTAGATATTG
Left flanking sequence: Indices 81471 -- 81970
CATCAAGGTGGACGGGCGCAAGCGGATTGTGATATATGCGTTGCGGGACATTGAGGCCAACGAGG
AGCTTACTTATGACTACAAGTTTGAGCGCGACACCAACGACGACGAGCGGATCCGGTGTTTGTGT
GGGGCCCCGGGGTGCAAGGGCTATCTTAATTAATAGAGTGGACTAATAGATACGATAAGAAGGTA
GAGAGGTGTGGTGTGGTTGTAGGTACGTACCGTGGTATGGGATGTTGAATGGTTGGCGTGGGTTG
GAGGGTTGGAAGTGGGAGGAAGAGGTGGAGAGTGGTAGATACTGAGGTGGAGAGTGGTAGAGACT
GAGATGGAGAAGTGGTAGACATTGAGGTGGAGAAGTGACAGACTAAATCATGGTGGCATGGGTTC
GTGACCTAGAATTGTAGTAGAGGTAAACTGCTGGTTGGCGGTGATTCAAGAGTGTGAGTTATCAG
ATGTTGGTGGCGTGGGTTTGAGTTGTGTGAGACATGATAGATACC
Right flanking sequence: Indices 82114 -- 82613
AGCTGGCGTGGGTTCGAGTGGTATAGAGAAGCGACAATTGTCAAATGCTGGTTGGCATCGGTTTG
GGTGACATAAAGATGCAATAGACTGGTTAGCGTTGGGTTCTATAAGAAAGTGGTAGATATTGAAT
GCTGGCTGGCATGGGTGTGGGTGTTCTAGTATGTCATAGATCAAACGCGGTTGGCTCAAGCTTGG
GAACTAAGCCTGTGATAGACAATAAAGACTGCCTAGAGTTAGATAGTGCCCTAGTTGGCTACTGA
AGGCGCTTACAGGTACTTTACAGGCTTGAGCGGGTAGCCTTCAAAATGGATGGCCTGGGTCAACC
AAAGTATGGCCATCCTGCGTGGGCTTCTTTAATAGTCAACCAAAGACTATCCCGCGATGTCTGCT
TACCGCTGACTATACCTCACCCTTAATTACTCATTGTGCCCGCTTCACTTGCATTTCCCCAGCTC
GCCCGTTCGCCTGCATCCCCTAGCTCCCGTTCGCCTGCGTCCCTA
Found at i:82616 original size:23 final size:24
Alignment explanation
Indices: 82570--82617 Score: 80
Period size: 24 Copynumber: 2.0 Consensus size: 24
82560 CCCCAGCTCG
82570 CCCGTTCGCCTGCATCCCCTAGCT
1 CCCGTTCGCCTGCATCCCCTAGCT
*
82594 CCCGTTCGCCTGCGT-CCCTAGCT
1 CCCGTTCGCCTGCATCCCCTAGCT
82617 C
1 C
82618 TTACCCTTTA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
23 9 0.39
24 14 0.61
ACGTcount: A:0.06, C:0.50, G:0.19, T:0.25
Consensus pattern (24 bp):
CCCGTTCGCCTGCATCCCCTAGCT
Left flanking sequence: Indices 82070 -- 82569
GTGACATGTGTTGTGATTTATAATCGTAGTAGATATTGAATGCTAGCTGGCGTGGGTTCGAGTGG
TATAGAGAAGCGACAATTGTCAAATGCTGGTTGGCATCGGTTTGGGTGACATAAAGATGCAATAG
ACTGGTTAGCGTTGGGTTCTATAAGAAAGTGGTAGATATTGAATGCTGGCTGGCATGGGTGTGGG
TGTTCTAGTATGTCATAGATCAAACGCGGTTGGCTCAAGCTTGGGAACTAAGCCTGTGATAGACA
ATAAAGACTGCCTAGAGTTAGATAGTGCCCTAGTTGGCTACTGAAGGCGCTTACAGGTACTTTAC
AGGCTTGAGCGGGTAGCCTTCAAAATGGATGGCCTGGGTCAACCAAAGTATGGCCATCCTGCGTG
GGCTTCTTTAATAGTCAACCAAAGACTATCCCGCGATGTCTGCTTACCGCTGACTATACCTCACC
CTTAATTACTCATTGTGCCCGCTTCACTTGCATTTCCCCAGCTCG
Right flanking sequence: Indices 82618 -- 83117
TTACCCTTTAGATTGCACATGCTTGGCCCAACTAGGAAACCGTTACACCAAAACGACGTGGTCGC
AGCAAAAGGTAAATACGAGGCAACCGTGGGTGCGATTGCTTTAGATTCGGGCTCCACGCGTGATC
CACGGCCATTGTTCTATAAAAAGAGTGGGGTAGCCGTCGCAAGCGAGGTGGTTCTGACGTCATGG
GCACAATAAACGAGCCTCGGGGATGGACACTTTGAGTGGTTTTACTACAAATAGGCAGGGCACGG
TGGGAGAAAGCTGCAATGAATGGCTTATCTACAAGCAAGGATCAGTACAGCCACCTCGTAAACAA
GCGTATCAAAGTACGACACCATCCACAATCATCCACAACCATCCACAACCATACACAACCATCCA
CTATCCTCACCCTCCACCACCTCACTAAGCCCACAGCAACCCTGTGCTCCATTTCATGTCCAAAC
AAGTAACTGCTTCGCCGTGCTCTCGATTAGTCGACATTGAAAATA
Found at i:82977 original size:10 final size:10
Alignment explanation
Indices: 82960--83008 Score: 80
Period size: 10 Copynumber: 4.9 Consensus size: 10
82950 AAAGTACGAC
82960 ACCATCCACA
1 ACCATCCACA
*
82970 ATCATCCACA
1 ACCATCCACA
82980 ACCATCCACA
1 ACCATCCACA
*
82990 ACCATACACA
1 ACCATCCACA
83000 ACCATCCAC
1 ACCATCCAC
83009 TATCCTCACC
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
10 35 1.00
ACGTcount: A:0.41, C:0.47, G:0.00, T:0.12
Consensus pattern (10 bp):
ACCATCCACA
Left flanking sequence: Indices 82460 -- 82959
GGCTTCTTTAATAGTCAACCAAAGACTATCCCGCGATGTCTGCTTACCGCTGACTATACCTCACC
CTTAATTACTCATTGTGCCCGCTTCACTTGCATTTCCCCAGCTCGCCCGTTCGCCTGCATCCCCT
AGCTCCCGTTCGCCTGCGTCCCTAGCTCTTACCCTTTAGATTGCACATGCTTGGCCCAACTAGGA
AACCGTTACACCAAAACGACGTGGTCGCAGCAAAAGGTAAATACGAGGCAACCGTGGGTGCGATT
GCTTTAGATTCGGGCTCCACGCGTGATCCACGGCCATTGTTCTATAAAAAGAGTGGGGTAGCCGT
CGCAAGCGAGGTGGTTCTGACGTCATGGGCACAATAAACGAGCCTCGGGGATGGACACTTTGAGT
GGTTTTACTACAAATAGGCAGGGCACGGTGGGAGAAAGCTGCAATGAATGGCTTATCTACAAGCA
AGGATCAGTACAGCCACCTCGTAAACAAGCGTATCAAAGTACGAC
Right flanking sequence: Indices 83009 -- 83508
TATCCTCACCCTCCACCACCTCACTAAGCCCACAGCAACCCTGTGCTCCATTTCATGTCCAAACA
AGTAACTGCTTCGCCGTGCTCTCGATTAGTCGACATTGAAAATAGTCGCACAAGCCCTATTCGGG
ACACTAGTGTTTTTTTTTCATGCGGTTCGCAACCAGGCATGCGATGGACCAGACAGCGACACCCC
CCCACCGCCCCTGGCCGCTTATCAACCCCGCTCTCTCCCCCCGTGTGGGCTGTTCCACCAGCCCG
CTGTCTCTCTCCCCTCTCGTTTACATTCTCATCGACGGGTGCATATGCCAAAAAATAACCACGAT
AATACCGATGTAACTAGAGCCATCACCGAGGTGCGGGCCCCACCCGGACCCGGGCCCTGCGGCGG
TGCTGCCGACACCTGCACGAGCCAGCCCAACCCCCGCCCTCCGCACCCCCGGCAGCCACCCCCCA
CCACCGCCCACCGCCCGCTGGGCCCCAAGCTCGCACCCTTGGCCT
Found at i:85887 original size:15 final size:15
Alignment explanation
Indices: 85867--85897 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
85857 TGGGTCCAGT
85867 GCTAGTGCCTAGGCG
1 GCTAGTGCCTAGGCG
85882 GCTAGTGCCTAGGCG
1 GCTAGTGCCTAGGCG
85897 G
1 G
85898 GCGAGTCTGG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.13, C:0.26, G:0.42, T:0.19
Consensus pattern (15 bp):
GCTAGTGCCTAGGCG
Left flanking sequence: Indices 85367 -- 85866
ACAACGAGGACCGCAAGGAAACGGTGTTTTTGCGGCGGTACACCCGCACCACCGAGTACATCATG
TTTGAAATGACCAACGGCAACTTCCAGTTCAACTTCAAGGACCACCACAAGATGTGTGTGCTGAA
GCTGGGGTTGGCCATCACCCACATCTCCCCCAACCGGGTCACCCAGACCCACCCGTTGCGGACGA
TTCTTGCCCATGGCAACTTCCCGGGCGGCGATGTGCCCGAGTGCTTGAACAAGATCGAAGTCATT
CGCGAGGCCATCAAAAAGAAGGCGTTTGAGTAGCCGTTAATATTGCATATCTTACGAATCTCTAA
TGAAACTAGTGTAGGTCAACGGTGGTTGATTGAGGGGTAGGAATGGGAGTGGGTTAGGAGTGGCT
TGGGATCAGATTGAGTGGGTTCGGAGTGTTATTCCTGGCTCAATGGACTCAATTACGTATAGACT
TTCATCGAAAAGCCGTTGAAAGTTTATATGGTGGATGGGTCCAGT
Right flanking sequence: Indices 85898 -- 86397
GCGAGTCTGGCACTAAGCGGTGGTTTCGACCTGGTAACCTTGGCAACAGCCTTTGGTTTTTACGG
TTACACCTGCTCGTCAAAAGCACTACAACGTTACTTACCATTCTGTCAACATCTGGGTTCATCTC
CACCCATTACGTCATCGAGATAACGGCTCACCTATTTTTGGCACTTGCGGGCACGCCCGTTTAGG
AAGGTGGCGAACAATAGGGGTGTTTTGAAGCTAGGGTTGCTAGCCAGGAGGTGGAGTGTATTTAG
CACCGTGCGTCAGGTGATTTGCCCCCTGGCTCGCGACGTCTGGCGCCTGTCACTGTGAAACGCCT
TGACAGCAGGGGTGAAATTTGAAAATTGCTGTAGATGAAACGGATCTAAGCATCAGCCCATGTTG
ACGGCCACAAAGAAGAACAAGCAGAGACTCACAAAACCAGGCAAACATGTCTCAGTCCGCATCTC
CACCCACATGAGTCTGAGATTTCGGCACTCAAATCACCGACCGTA
Found at i:87625 original size:15 final size:15
Alignment explanation
Indices: 87602--87642 Score: 73
Period size: 15 Copynumber: 2.7 Consensus size: 15
87592 CCGACGACCT
*
87602 CGACAACCGACTCGC
1 CGACGACCGACTCGC
87617 CGACGACCGACTCGC
1 CGACGACCGACTCGC
87632 CGACGACCGAC
1 CGACGACCGAC
87643 GCGATAACCA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
15 25 1.00
ACGTcount: A:0.24, C:0.46, G:0.24, T:0.05
Consensus pattern (15 bp):
CGACGACCGACTCGC
Left flanking sequence: Indices 87102 -- 87601
AGCGGGGTTGGCGGTGGTCGGGGGTCAGGTGGTGGCCCTGGCCAGCTGGCCGCGGTGTAGCCCGG
CCCACCCACTCCGTTTCCGCACCGCTTCCCCGCCGCCTGCCCCCACCTCTTCCCCCTCGTGTCCC
GATCGCGCCTGGCCAGGGCTCGGTTCAGGCCGGGTAACCGCGCCAGCAGCGGACCCGCCATTTCG
GCAACACTCATTTTTTTGTTCTGAGCTTCAAATCAGACCCAGCTGGTGACTACTCCCCGGCTTTC
CTCCCTGCTGTTTTCGACTCGTGCCTGAGTGCTTCTTTCCCTAACCTCCGTGTCCGTGTGCCCGG
GCGTCGAAACAGAGTTCCCAGATGACGAACCCGCTGTATCCCTGGAACAACCAACAGAGGCCGCT
TGGCCAGCAATTCAAGTAAGTACCGTGTTATTGGAGGTGGCTGGCAGAGCCAGCGCCACGATTTA
GCCGGTGGTCGCCGTGGCCGACTCGCCGACGACCACCGACGACCT
Right flanking sequence: Indices 87643 -- 88142
GCGATAACCAAGTGGGACGCAAGCAGGCTCACAGGCTCAAACTACCGGACGTGTCCCAACGCAAG
TCCCGACGCGTCCCGATCGGGCAGGCTCATGCCACCCGTGTTTCGACCTGTGTTTGTCTGCGTCC
TCTCTTCTCTGCGTCCTCCTTCTCTGCGTCCTCCCGTCTCCGCGTCCTTCTTTGCGTCCTCCCCG
TTAGCGTGCCCCACCTCCGCTGTGGCCACTTCCCCGCCTCCCCCGCCTCCACGTCAACCTCCCCG
CCTCCATACTAACCACCAGTCCCCCCCGGCCTCCCGTGCTCCCGCCCCCGGCCACGTTGGAAACC
GGTATGTTGTCCCACCGCCCCGTGTCTGGCTCCGATACTAACCGCCCAGGCCAGCTGTTCTACCC
GTTGCCGAGCTTGCACTCGTTGGGGAACAACGGTAACCCCGGCGGCTACCAGATCCCCTCGATCA
ACTCGGTCGAAGTCAGCAACCACCCGTCGCCCGCGCCAGGGCCCG
Found at i:87785 original size:16 final size:16
Alignment explanation
Indices: 87764--87824 Score: 81
Period size: 16 Copynumber: 3.9 Consensus size: 16
87754 CCTGTGTTTG
87764 TCTGCGTCCTCTCTTC
1 TCTGCGTCCTCTCTTC
87780 TCTGCGTCCTC-CTTC
1 TCTGCGTCCTCTCTTC
* *
87795 TCTGCGTCCTCCCGTC
1 TCTGCGTCCTCTCTTC
*
87811 TCCGCGTCCT-TCTT
1 TCTGCGTCCTCTCTT
87825 TGCGTCCTCC
Statistics
Matches: 40, Mismatches: 4, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
15 17 0.43
16 23 0.57
ACGTcount: A:0.00, C:0.46, G:0.15, T:0.39
Consensus pattern (16 bp):
TCTGCGTCCTCTCTTC
Left flanking sequence: Indices 87264 -- 87763
GGTAACCGCGCCAGCAGCGGACCCGCCATTTCGGCAACACTCATTTTTTTGTTCTGAGCTTCAAA
TCAGACCCAGCTGGTGACTACTCCCCGGCTTTCCTCCCTGCTGTTTTCGACTCGTGCCTGAGTGC
TTCTTTCCCTAACCTCCGTGTCCGTGTGCCCGGGCGTCGAAACAGAGTTCCCAGATGACGAACCC
GCTGTATCCCTGGAACAACCAACAGAGGCCGCTTGGCCAGCAATTCAAGTAAGTACCGTGTTATT
GGAGGTGGCTGGCAGAGCCAGCGCCACGATTTAGCCGGTGGTCGCCGTGGCCGACTCGCCGACGA
CCACCGACGACCTCGACAACCGACTCGCCGACGACCGACTCGCCGACGACCGACGCGATAACCAA
GTGGGACGCAAGCAGGCTCACAGGCTCAAACTACCGGACGTGTCCCAACGCAAGTCCCGACGCGT
CCCGATCGGGCAGGCTCATGCCACCCGTGTTTCGACCTGTGTTTG
Right flanking sequence: Indices 87825 -- 88324
TGCGTCCTCCCCGTTAGCGTGCCCCACCTCCGCTGTGGCCACTTCCCCGCCTCCCCCGCCTCCAC
GTCAACCTCCCCGCCTCCATACTAACCACCAGTCCCCCCCGGCCTCCCGTGCTCCCGCCCCCGGC
CACGTTGGAAACCGGTATGTTGTCCCACCGCCCCGTGTCTGGCTCCGATACTAACCGCCCAGGCC
AGCTGTTCTACCCGTTGCCGAGCTTGCACTCGTTGGGGAACAACGGTAACCCCGGCGGCTACCAG
ATCCCCTCGATCAACTCGGTCGAAGTCAGCAACCACCCGTCGCCCGCGCCAGGGCCCGCGGGGCT
CCCGGAACGCCGCGCGCTGGGGGTGTTGCCGCTGCTGCTCCCGCCGCCGGCGCTGATCGTCGAGC
CGGCGATGGACCCCAACCGGCTGACCTCCACCAACGTCTACCGCACCCTCAACGTCAAGGACGCG
CTCTCGTACCTCGACCAGGTCAAAATCAAGTTCTACTCGCAGCCC
Found at i:88618 original size:18 final size:18
Alignment explanation
Indices: 88597--88633 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
88587 AGCAGTTGCC
88597 GCAGCCACCGCAGCCCCA
1 GCAGCCACCGCAGCCCCA
*
88615 GCAGCCGCCGCAGCCCCA
1 GCAGCCACCGCAGCCCCA
88633 G
1 G
88634 GGCGGGCAGA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.19, C:0.54, G:0.27, T:0.00
Consensus pattern (18 bp):
GCAGCCACCGCAGCCCCA
Left flanking sequence: Indices 88097 -- 88596
AACTCGGTCGAAGTCAGCAACCACCCGTCGCCCGCGCCAGGGCCCGCGGGGCTCCCGGAACGCCG
CGCGCTGGGGGTGTTGCCGCTGCTGCTCCCGCCGCCGGCGCTGATCGTCGAGCCGGCGATGGACC
CCAACCGGCTGACCTCCACCAACGTCTACCGCACCCTCAACGTCAAGGACGCGCTCTCGTACCTC
GACCAGGTCAAAATCAAGTTCTACTCGCAGCCCGACGTCTACAACAACTTTTTGGACATCATGAA
GGACTTCAAGTCCCAGTCGATCGACACCCCGGGGGTGATCGACCGGGTGCTGACGCTTTTCCGCG
GCCACCCGAGCCTCATCCAGGGGTTCAACACGTTCTTGCCGCCGGGCTACCGCATCGAGTGCCTG
ATGGACCCGCTGGACCCCAACCCGATCCGGGTCACCACCCCGACGGGGTCGCTGCTGCGGCCCGA
ACAGCCCAAGGACGAGTTCGACGCGCCGCCACAGCAGCAGTTGCC
Right flanking sequence: Indices 88634 -- 89133
GGCGGGCAGATCGAGTTCAACCACGCCATCAACTACGTCAACAAGATCAAGACCCGGTTCGCCAA
CCAGCCCGACATCTACAAGCAGTTCTTGGAGATCTTGCAGACGTACCAGCGCGAGCAGAAGCCCA
TTGGCGAGGTGTACGAGCAGGTGACGGTGCTCTTTGCCAACCTGCCGGACTTGTTGGACGACTTC
AAGCAGTTTTTGCCCGACACCCTGAACCAGGCGGCGGCGGTGGCGGCGATGGCGGTGCAGAACCA
GCCACCGCCGTTCCAGCAGTACCCGCCCATGGGCGCCAACGGGTTCTACAACGGGCAGCCACCGC
AACCGCCGCCCCAGACGCTTCCCCCCGTGGGCAACTTCCAGCAGCAGCAGCCGCAGCCCGAGTAC
CACCCGTACCAGGCGGCCACCGCGGCTGCCGCGGCCCAGCCGCCGTTGCCCGTGGAAAAGGACGA
GCCCGAGGTGCTGAACGTGCGCCAGAAGAAGGGCAAGCCCAACGC
Found at i:91885 original size:13 final size:13
Alignment explanation
Indices: 91867--91916 Score: 64
Period size: 13 Copynumber: 3.8 Consensus size: 13
91857 CTCGCAATAC
91867 GAGAAGGCTACAG
1 GAGAAGGCTACAG
91880 GAGAAGGCTACAG
1 GAGAAGGCTACAG
* *
91893 GGGAAGGCTATAG
1 GAGAAGGCTACAG
*
91906 GCGAATGGCTA
1 GAGAA-GGCTA
91917 TGGAGGCAGG
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
13 28 0.85
14 5 0.15
ACGTcount: A:0.34, C:0.14, G:0.40, T:0.12
Consensus pattern (13 bp):
GAGAAGGCTACAG
Left flanking sequence: Indices 91367 -- 91866
CGGTTGTTCTTTGAGGCGGACACCTTTGACGAGTTCACCGCCAACGACGTGTACCTGAAGGCGAC
GGCGGCGGTGCCCAACCGCGCGGAGCGGGTCAGTGCGCTTGCGAAGCTCGTGGGCGACCCCGAGT
GCGGGTGGCAGCACGGGTTGGAGGGTGACGACGCGGCCCAGTTGACGGCGGCCGCCGACAAGTTG
TTCTCCGAGGGGGCTGCTGCGTACCAGGCGGTCAAGCGCGAGCCCGAGGAGGACACGACGATGGC
GGAGACGACGATGGCCGCCGAGACCACGGTGGTGGCGGACACCACTGCCAACGACACGACCGTGC
ACCACGAAGCTAATGACACCACCACCGACGACATCACCAACCCCCACGGGGACGCCTAAATGTAA
TTTTATAGTGATAAAAAAGAGGAAGAAGGGGTTAGAGATAGGGTAGGGGCAGGCGAGAAAAGAGG
GTATAGGAGATGGATAGGAGACGAGCCATGGGAGACTCGCAATAC
Right flanking sequence: Indices 91917 -- 92416
TGGAGGCAGGCTGACAGGCAATAAGAGACAGGCTAGTGGAGAGAGATTAGAGAAGACAGGCTTTA
GGGAACAGGCTGACAGGCAGGCGGCGGGCTACAGATGGTTGAACGAGAAAGCTAGATTATGGTGT
TCGTTTATACCAACTAGTTTTCTATTCGATACAATAAATGAATGAGAAAGCTAGAGGAGAAGGCT
ACAGGTGCTACGAGACAGGCTATAGGAGATAGGCTATAGGTGAAGGGCCACAATTGATAGCTCAA
AGCTGGCTAAAGGTATCTCCGCCGGCGTTGACTCGTCCAGCGGGTGATTGAATTGTGAGACCGTA
GAATCAAGACCCGATATGATTATATTAGGTATCTGAATCGAGTAGGGCTTTAGAAAAGTATGGGT
GGTGAATGTGGGGTGATGGGTTAATTTGGACAGCTACTGTTGCTTTGGCCTGGTGTGAAGGCATG
GTGGTGTTTCATGATGCCGCGTTTGATAGAAACACTCTTCATTTT
Found at i:92740 original size:31 final size:31
Alignment explanation
Indices: 92682--92740 Score: 75
Period size: 31 Copynumber: 1.9 Consensus size: 31
92672 TCAGTAGTAG
*
92682 TCGTTACTTGTTAGTCTCAGATTAGCCTTTA
1 TCGTTACTTGTTAGTCTCAGATCAGCCTTTA
* *
92713 TCGTTTCTTGTTAGTTTCAGCA-CAGCCT
1 TCGTTACTTGTTAGTCTCAG-ATCAGCCT
92741 ATGTCCGCTT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
31 23 0.96
32 1 0.04
ACGTcount: A:0.17, C:0.22, G:0.17, T:0.44
Consensus pattern (31 bp):
TCGTTACTTGTTAGTCTCAGATCAGCCTTTA
Left flanking sequence: Indices 92182 -- 92681
GCTAAAGGTATCTCCGCCGGCGTTGACTCGTCCAGCGGGTGATTGAATTGTGAGACCGTAGAATC
AAGACCCGATATGATTATATTAGGTATCTGAATCGAGTAGGGCTTTAGAAAAGTATGGGTGGTGA
ATGTGGGGTGATGGGTTAATTTGGACAGCTACTGTTGCTTTGGCCTGGTGTGAAGGCATGGTGGT
GTTTCATGATGCCGCGTTTGATAGAAACACTCTTCATTTTGGCTGCTTAGTTGGTTGTTTTGCGG
TAGTCTACTAGAAGGAAAGATTCAGTGGCGTTTCCTGGTGTGTCTAATGACTCGATGCCATCAAC
TTAGATCTCGAAGCTTACGCCCAGTAGTACTCGTTACTTCGTAAGATCAGTGTACACTATGAGAT
CTTCTTGGATCTCGAAGCTTCATCGTTGACAACCTCCGTTTCCAGGTAGTATTCAGTCACTTTAC
TCGATGCTCATCAGCCTAGATCTCAAAGCTTACGTTCAGTAGTAG
Right flanking sequence: Indices 92741 -- 93240
ATGTCCGCTTAGATCGCTAAGCTTCTCTACGCCCTCGACAGCCATCGTCACAAGGTAGTATTCTG
TCAGTGTCCTCGATGCTCATCCGCCTAGATCTCGACGCTTGTACTCGATGCTCATCTGCTTGCTC
TAAAGTCTTTCTAACTAATACCTCTGACGAGTCGACCAGTGAGACGACCCTTAGACGATCTCTCA
GTGACCTCATACGATTCGAGCGGTAGCTCCATCGTCTCCTCCTTCCCATCTCAACTCGTTTCAAC
GTTCTCTCGTTTCCACATCCCCGTTTCTACATCCTCCGTTACCACCCGTCTCCCTCGGCTAGCCG
TGTCTCGTAACTCCGCAGAAACACCGTGCCCCTGGTGCCCGTGCAACCTCGGTGGCGCCACTCGC
GGCTGTCGGACGTGCCGTGCATACGCATACCGTCCGCAATGTCCTATTCCTTCTATCTTTTTCCA
CCTCCTCCCCGTCTCCTTGTCACCACGCGCTACTCCGCGTGCCTG
Found at i:93027 original size:14 final size:15
Alignment explanation
Indices: 93008--93045 Score: 51
Period size: 14 Copynumber: 2.6 Consensus size: 15
92998 AACGTTCTCT
93008 CGTTTCCACATCC-C
1 CGTTTCCACATCCTC
*
93022 CGTTTCTACATCCTC
1 CGTTTCCACATCCTC
*
93037 CGTTACCAC
1 CGTTTCCAC
93046 CCGTCTCCCT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
14 12 0.60
15 8 0.40
ACGTcount: A:0.16, C:0.45, G:0.08, T:0.32
Consensus pattern (15 bp):
CGTTTCCACATCCTC
Left flanking sequence: Indices 92508 -- 93007
TAGATCTCGAAGCTTACGCCCAGTAGTACTCGTTACTTCGTAAGATCAGTGTACACTATGAGATC
TTCTTGGATCTCGAAGCTTCATCGTTGACAACCTCCGTTTCCAGGTAGTATTCAGTCACTTTACT
CGATGCTCATCAGCCTAGATCTCAAAGCTTACGTTCAGTAGTAGTCGTTACTTGTTAGTCTCAGA
TTAGCCTTTATCGTTTCTTGTTAGTTTCAGCACAGCCTATGTCCGCTTAGATCGCTAAGCTTCTC
TACGCCCTCGACAGCCATCGTCACAAGGTAGTATTCTGTCAGTGTCCTCGATGCTCATCCGCCTA
GATCTCGACGCTTGTACTCGATGCTCATCTGCTTGCTCTAAAGTCTTTCTAACTAATACCTCTGA
CGAGTCGACCAGTGAGACGACCCTTAGACGATCTCTCAGTGACCTCATACGATTCGAGCGGTAGC
TCCATCGTCTCCTCCTTCCCATCTCAACTCGTTTCAACGTTCTCT
Right flanking sequence: Indices 93046 -- 93545
CCGTCTCCCTCGGCTAGCCGTGTCTCGTAACTCCGCAGAAACACCGTGCCCCTGGTGCCCGTGCA
ACCTCGGTGGCGCCACTCGCGGCTGTCGGACGTGCCGTGCATACGCATACCGTCCGCAATGTCCT
ATTCCTTCTATCTTTTTCCACCTCCTCCCCGTCTCCTTGTCACCACGCGCTACTCCGCGTGCCTG
GCATTTTACGAGCGGTCCACCAGGATTTACCGTCAACAATGTGGAGATGCACACTACGTCTACCC
CGACGCGTCGTGTTTCATTCCACAAGTATCGTCGTTTACTTGTAGCTAGCCCGGCTGTGTGCAGT
CCGCGCTCCCTGCAGGTACCGGGTTTATGAGGTTGACAGGGGAAACCCCCCTAGCAACAGACACA
GCAACCGAGCAAGCACGGGGCTAACCCGCGCATAACCCGTGGCGGGGCTGTTGCTGGCCACCGCC
GACCTTTCTCCCCCGTAGCCTTGCGGGCTGGTCCCCCACCACGCG
Found at i:94056 original size:11 final size:11
Alignment explanation
Indices: 94040--94081 Score: 75
Period size: 11 Copynumber: 3.8 Consensus size: 11
94030 CCCGCTCGTA
94040 ACCATACGTCT
1 ACCATACGTCT
94051 ACCATACGTCT
1 ACCATACGTCT
94062 ACCATACGTCT
1 ACCATACGTCT
*
94073 ACCACACGT
1 ACCATACGT
94082 ACCCAGCAGA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
11 30 1.00
ACGTcount: A:0.29, C:0.38, G:0.10, T:0.24
Consensus pattern (11 bp):
ACCATACGTCT
Left flanking sequence: Indices 93540 -- 94039
CACGCGTCGCTCGCGTCGGCACGATGACCTCATCGATCGATACGTTTCACCACCAAATGCGTGTC
AGTGGCACCGAGACACGGGCCACGGCGTCCCCCGGTGCGTCGGGTGGCAGCCGGCGCCACGGAGG
GTGCGGGAGCCGTGTACGGTTACGGGTGTTTTTGTGGTGTGCTGCCTGCATTCTATTTAGACGCG
TTGGTTAAGCCCCGACTAGTCCAGGCACTAGACGAGTAAGTTTACACGGTGACGGCATTGTCGTC
ATTGTACGCACACAGCACTCGTTGGGGGTCACAATACCAAACCTTAACTAAGTTTAGCATTCGAT
GAGACCAGTAGAGGGGTGTGTAACCAGCCGTGACCACATGTAACCACTACCAGCAGGCTCCACCA
GTCTAACAGTCAGACAGCTAGTCTACATCACGCCTATACCCGCGTTTCCCCGCCTCTACCCGTAC
TACCAGCGTCCACCACCTCAATTCCTACTTCTTTCCCCGCTCGTA
Right flanking sequence: Indices 94082 -- 94581
ACCCAGCAGACGTACCCAGCAGACGTACCCACCACGCAGTCTACCCATTCAACACACCACAATAT
ACCCTCTTCCCACAATCTCTACCCTCTACCCACAATCTCTAACTTTACCACCCAATCTCTGCCCT
CTACCCATGTTCTCTAGCCTTTCACCCAATTCCTAACCTCTACTTACAATCTCACACCCTCCACC
ACACCGACACCACACACTATACCTACCACTCTACCCACACTCTCTCCTATTATTCTCCCTTTCCC
ATCCTCCCATCCCCTTTCCACCCTCCTTTCCACCGTCTCCTTCCACCGTCTCCTATCCATCGTCT
CCTATTACTTTTCCCCTTTCTTTCCCTCCTCCCTCCTCCCTCCCTCCCCTCTCCTCCTACCCCGC
TATATTTAGCAGCACGCTAAAATTACCGCTGGTGCAGCCGGCCCGAGGCGGCCCACCACGGTGCC
ACCCACCCTCCCGACTGCCGCCGCCCTCCTCCACCACCCCTCACC
Found at i:94096 original size:13 final size:13
Alignment explanation
Indices: 94078--94112 Score: 70
Period size: 13 Copynumber: 2.7 Consensus size: 13
94068 CGTCTACCAC
94078 ACGTACCCAGCAG
1 ACGTACCCAGCAG
94091 ACGTACCCAGCAG
1 ACGTACCCAGCAG
94104 ACGTACCCA
1 ACGTACCCA
94113 CCACGCAGTC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.31, C:0.40, G:0.20, T:0.09
Consensus pattern (13 bp):
ACGTACCCAGCAG
Left flanking sequence: Indices 93578 -- 94077
GATACGTTTCACCACCAAATGCGTGTCAGTGGCACCGAGACACGGGCCACGGCGTCCCCCGGTGC
GTCGGGTGGCAGCCGGCGCCACGGAGGGTGCGGGAGCCGTGTACGGTTACGGGTGTTTTTGTGGT
GTGCTGCCTGCATTCTATTTAGACGCGTTGGTTAAGCCCCGACTAGTCCAGGCACTAGACGAGTA
AGTTTACACGGTGACGGCATTGTCGTCATTGTACGCACACAGCACTCGTTGGGGGTCACAATACC
AAACCTTAACTAAGTTTAGCATTCGATGAGACCAGTAGAGGGGTGTGTAACCAGCCGTGACCACA
TGTAACCACTACCAGCAGGCTCCACCAGTCTAACAGTCAGACAGCTAGTCTACATCACGCCTATA
CCCGCGTTTCCCCGCCTCTACCCGTACTACCAGCGTCCACCACCTCAATTCCTACTTCTTTCCCC
GCTCGTAACCATACGTCTACCATACGTCTACCATACGTCTACCAC
Right flanking sequence: Indices 94113 -- 94612
CCACGCAGTCTACCCATTCAACACACCACAATATACCCTCTTCCCACAATCTCTACCCTCTACCC
ACAATCTCTAACTTTACCACCCAATCTCTGCCCTCTACCCATGTTCTCTAGCCTTTCACCCAATT
CCTAACCTCTACTTACAATCTCACACCCTCCACCACACCGACACCACACACTATACCTACCACTC
TACCCACACTCTCTCCTATTATTCTCCCTTTCCCATCCTCCCATCCCCTTTCCACCCTCCTTTCC
ACCGTCTCCTTCCACCGTCTCCTATCCATCGTCTCCTATTACTTTTCCCCTTTCTTTCCCTCCTC
CCTCCTCCCTCCCTCCCCTCTCCTCCTACCCCGCTATATTTAGCAGCACGCTAAAATTACCGCTG
GTGCAGCCGGCCCGAGGCGGCCCACCACGGTGCCACCCACCCTCCCGACTGCCGCCGCCCTCCTC
CACCACCCCTCACCCCACCCGCCACCGCTCCCCGTTCCCTGATCG
Found at i:94161 original size:18 final size:18
Alignment explanation
Indices: 94138--94182 Score: 54
Period size: 20 Copynumber: 2.4 Consensus size: 18
94128 ATTCAACACA
*
94138 CCACAATATACCCTCTTC
1 CCACAATATACCCTCTAC
*
94156 CCACAATCTCTACCCTCTAC
1 CCACAA--TATACCCTCTAC
94176 CCACAAT
1 CCACAAT
94183 CTCTAACTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
18 7 0.30
20 16 0.70
ACGTcount: A:0.29, C:0.47, G:0.00, T:0.24
Consensus pattern (18 bp):
CCACAATATACCCTCTAC
Left flanking sequence: Indices 93638 -- 94137
GGTGCGTCGGGTGGCAGCCGGCGCCACGGAGGGTGCGGGAGCCGTGTACGGTTACGGGTGTTTTT
GTGGTGTGCTGCCTGCATTCTATTTAGACGCGTTGGTTAAGCCCCGACTAGTCCAGGCACTAGAC
GAGTAAGTTTACACGGTGACGGCATTGTCGTCATTGTACGCACACAGCACTCGTTGGGGGTCACA
ATACCAAACCTTAACTAAGTTTAGCATTCGATGAGACCAGTAGAGGGGTGTGTAACCAGCCGTGA
CCACATGTAACCACTACCAGCAGGCTCCACCAGTCTAACAGTCAGACAGCTAGTCTACATCACGC
CTATACCCGCGTTTCCCCGCCTCTACCCGTACTACCAGCGTCCACCACCTCAATTCCTACTTCTT
TCCCCGCTCGTAACCATACGTCTACCATACGTCTACCATACGTCTACCACACGTACCCAGCAGAC
GTACCCAGCAGACGTACCCACCACGCAGTCTACCCATTCAACACA
Right flanking sequence: Indices 94183 -- 94682
CTCTAACTTTACCACCCAATCTCTGCCCTCTACCCATGTTCTCTAGCCTTTCACCCAATTCCTAA
CCTCTACTTACAATCTCACACCCTCCACCACACCGACACCACACACTATACCTACCACTCTACCC
ACACTCTCTCCTATTATTCTCCCTTTCCCATCCTCCCATCCCCTTTCCACCCTCCTTTCCACCGT
CTCCTTCCACCGTCTCCTATCCATCGTCTCCTATTACTTTTCCCCTTTCTTTCCCTCCTCCCTCC
TCCCTCCCTCCCCTCTCCTCCTACCCCGCTATATTTAGCAGCACGCTAAAATTACCGCTGGTGCA
GCCGGCCCGAGGCGGCCCACCACGGTGCCACCCACCCTCCCGACTGCCGCCGCCCTCCTCCACCA
CCCCTCACCCCACCCGCCACCGCTCCCCGTTCCCTGATCGACCCAACCCTATTGTATGCGAAAAA
ATAATCTGAGGAACGTAAACAACACCTGACCCGAGATCGCGGCCG
Found at i:94171 original size:20 final size:20
Alignment explanation
Indices: 94146--94218 Score: 85
Period size: 20 Copynumber: 3.6 Consensus size: 20
94136 CACCACAATA
*
94146 TACCCTCTTCCCACAATCTC
1 TACCCTCTACCCACAATCTC
94166 TACCCTCTACCCACAATCTC
1 TACCCTCTACCCACAATCTC
* * *
94186 TA-ACTTTACCACCCAATCTC
1 TACCCTCTACC-CACAATCTC
*
94206 TGCCCTCTACCCA
1 TACCCTCTACCCA
94219 TGTTCTCTAG
Statistics
Matches: 43, Mismatches: 8, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
19 6 0.14
20 31 0.72
21 6 0.14
ACGTcount: A:0.23, C:0.48, G:0.01, T:0.27
Consensus pattern (20 bp):
TACCCTCTACCCACAATCTC
Left flanking sequence: Indices 93646 -- 94145
GGGTGGCAGCCGGCGCCACGGAGGGTGCGGGAGCCGTGTACGGTTACGGGTGTTTTTGTGGTGTG
CTGCCTGCATTCTATTTAGACGCGTTGGTTAAGCCCCGACTAGTCCAGGCACTAGACGAGTAAGT
TTACACGGTGACGGCATTGTCGTCATTGTACGCACACAGCACTCGTTGGGGGTCACAATACCAAA
CCTTAACTAAGTTTAGCATTCGATGAGACCAGTAGAGGGGTGTGTAACCAGCCGTGACCACATGT
AACCACTACCAGCAGGCTCCACCAGTCTAACAGTCAGACAGCTAGTCTACATCACGCCTATACCC
GCGTTTCCCCGCCTCTACCCGTACTACCAGCGTCCACCACCTCAATTCCTACTTCTTTCCCCGCT
CGTAACCATACGTCTACCATACGTCTACCATACGTCTACCACACGTACCCAGCAGACGTACCCAG
CAGACGTACCCACCACGCAGTCTACCCATTCAACACACCACAATA
Right flanking sequence: Indices 94219 -- 94718
TGTTCTCTAGCCTTTCACCCAATTCCTAACCTCTACTTACAATCTCACACCCTCCACCACACCGA
CACCACACACTATACCTACCACTCTACCCACACTCTCTCCTATTATTCTCCCTTTCCCATCCTCC
CATCCCCTTTCCACCCTCCTTTCCACCGTCTCCTTCCACCGTCTCCTATCCATCGTCTCCTATTA
CTTTTCCCCTTTCTTTCCCTCCTCCCTCCTCCCTCCCTCCCCTCTCCTCCTACCCCGCTATATTT
AGCAGCACGCTAAAATTACCGCTGGTGCAGCCGGCCCGAGGCGGCCCACCACGGTGCCACCCACC
CTCCCGACTGCCGCCGCCCTCCTCCACCACCCCTCACCCCACCCGCCACCGCTCCCCGTTCCCTG
ATCGACCCAACCCTATTGTATGCGAAAAAATAATCTGAGGAACGTAAACAACACCTGACCCGAGA
TCGCGGCCGCACAACCACCCACCGGCCTGTAACCAGCCAAGCGCA
Found at i:94371 original size:12 final size:13
Alignment explanation
Indices: 94354--94400 Score: 53
Period size: 13 Copynumber: 3.6 Consensus size: 13
94344 CCTCCCATCC
94354 CCTTTCCACC-CT
1 CCTTTCCACCGCT
94366 CCTTTCCACCGTCT
1 CCTTTCCACCG-CT
94380 CC-TTCCACCGTCT
1 CCTTTCCACCG-CT
*
94393 CCTATCCA
1 CCTTTCCA
94401 TCGTCTCCTA
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
12 10 0.32
13 13 0.42
14 8 0.26
ACGTcount: A:0.11, C:0.53, G:0.04, T:0.32
Consensus pattern (13 bp):
CCTTTCCACCGCT
Left flanking sequence: Indices 93854 -- 94353
TAGCATTCGATGAGACCAGTAGAGGGGTGTGTAACCAGCCGTGACCACATGTAACCACTACCAGC
AGGCTCCACCAGTCTAACAGTCAGACAGCTAGTCTACATCACGCCTATACCCGCGTTTCCCCGCC
TCTACCCGTACTACCAGCGTCCACCACCTCAATTCCTACTTCTTTCCCCGCTCGTAACCATACGT
CTACCATACGTCTACCATACGTCTACCACACGTACCCAGCAGACGTACCCAGCAGACGTACCCAC
CACGCAGTCTACCCATTCAACACACCACAATATACCCTCTTCCCACAATCTCTACCCTCTACCCA
CAATCTCTAACTTTACCACCCAATCTCTGCCCTCTACCCATGTTCTCTAGCCTTTCACCCAATTC
CTAACCTCTACTTACAATCTCACACCCTCCACCACACCGACACCACACACTATACCTACCACTCT
ACCCACACTCTCTCCTATTATTCTCCCTTTCCCATCCTCCCATCC
Right flanking sequence: Indices 94401 -- 94900
TCGTCTCCTATTACTTTTCCCCTTTCTTTCCCTCCTCCCTCCTCCCTCCCTCCCCTCTCCTCCTA
CCCCGCTATATTTAGCAGCACGCTAAAATTACCGCTGGTGCAGCCGGCCCGAGGCGGCCCACCAC
GGTGCCACCCACCCTCCCGACTGCCGCCGCCCTCCTCCACCACCCCTCACCCCACCCGCCACCGC
TCCCCGTTCCCTGATCGACCCAACCCTATTGTATGCGAAAAAATAATCTGAGGAACGTAAACAAC
ACCTGACCCGAGATCGCGGCCGCACAACCACCCACCGGCCTGTAACCAGCCAAGCGCACCACCCA
CACCCACACACCCACACACCCACATCACCCAACCTACACCCATTCGCGTTCCACCCCACCCACCC
GCTTTAACCCTCTCGTGGAATCTCCCTCCACACCCTCCTCCCTCTCCCTCCTCGCACCTCCTCGC
GCTCGCCGAACCTTTGTTCCCATCCGTCGCGCGCCAGGACAAATT
Found at i:94383 original size:14 final size:14
Alignment explanation
Indices: 94354--94409 Score: 73
Period size: 14 Copynumber: 4.2 Consensus size: 14
94344 CCTCCCATCC
94354 CCTTTCCACC--CT
1 CCTTTCCACCGTCT
94366 CCTTTCCACCGTCT
1 CCTTTCCACCGTCT
94380 CC-TTCCACCGTCT
1 CCTTTCCACCGTCT
* *
94393 CCTATCCATCGTCT
1 CCTTTCCACCGTCT
94407 CCT
1 CCT
94410 ATTACTTTTC
Statistics
Matches: 39, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
12 10 0.26
13 13 0.33
14 16 0.41
ACGTcount: A:0.09, C:0.52, G:0.05, T:0.34
Consensus pattern (14 bp):
CCTTTCCACCGTCT
Left flanking sequence: Indices 93854 -- 94353
TAGCATTCGATGAGACCAGTAGAGGGGTGTGTAACCAGCCGTGACCACATGTAACCACTACCAGC
AGGCTCCACCAGTCTAACAGTCAGACAGCTAGTCTACATCACGCCTATACCCGCGTTTCCCCGCC
TCTACCCGTACTACCAGCGTCCACCACCTCAATTCCTACTTCTTTCCCCGCTCGTAACCATACGT
CTACCATACGTCTACCATACGTCTACCACACGTACCCAGCAGACGTACCCAGCAGACGTACCCAC
CACGCAGTCTACCCATTCAACACACCACAATATACCCTCTTCCCACAATCTCTACCCTCTACCCA
CAATCTCTAACTTTACCACCCAATCTCTGCCCTCTACCCATGTTCTCTAGCCTTTCACCCAATTC
CTAACCTCTACTTACAATCTCACACCCTCCACCACACCGACACCACACACTATACCTACCACTCT
ACCCACACTCTCTCCTATTATTCTCCCTTTCCCATCCTCCCATCC
Right flanking sequence: Indices 94410 -- 94909
ATTACTTTTCCCCTTTCTTTCCCTCCTCCCTCCTCCCTCCCTCCCCTCTCCTCCTACCCCGCTAT
ATTTAGCAGCACGCTAAAATTACCGCTGGTGCAGCCGGCCCGAGGCGGCCCACCACGGTGCCACC
CACCCTCCCGACTGCCGCCGCCCTCCTCCACCACCCCTCACCCCACCCGCCACCGCTCCCCGTTC
CCTGATCGACCCAACCCTATTGTATGCGAAAAAATAATCTGAGGAACGTAAACAACACCTGACCC
GAGATCGCGGCCGCACAACCACCCACCGGCCTGTAACCAGCCAAGCGCACCACCCACACCCACAC
ACCCACACACCCACATCACCCAACCTACACCCATTCGCGTTCCACCCCACCCACCCGCTTTAACC
CTCTCGTGGAATCTCCCTCCACACCCTCCTCCCTCTCCCTCCTCGCACCTCCTCGCGCTCGCCGA
ACCTTTGTTCCCATCCGTCGCGCGCCAGGACAAATTTTCTTCTGG
Found at i:94400 original size:27 final size:25
Alignment explanation
Indices: 94357--94409 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 25
94347 CCCATCCCCT
*
94357 TTCCACCCTCCTTTCCACCGTCTCC
1 TTCCACCCTCCTATCCACCGTCTCC
*
94382 TTCCACCGTCTCCTATCCATCGTCTCC
1 TTCCACC--CTCCTATCCACCGTCTCC
94409 T
1 T
94410 ATTACTTTTC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
27 17 0.71
ACGTcount: A:0.09, C:0.51, G:0.06, T:0.34
Consensus pattern (25 bp):
TTCCACCCTCCTATCCACCGTCTCC
Left flanking sequence: Indices 93857 -- 94356
CATTCGATGAGACCAGTAGAGGGGTGTGTAACCAGCCGTGACCACATGTAACCACTACCAGCAGG
CTCCACCAGTCTAACAGTCAGACAGCTAGTCTACATCACGCCTATACCCGCGTTTCCCCGCCTCT
ACCCGTACTACCAGCGTCCACCACCTCAATTCCTACTTCTTTCCCCGCTCGTAACCATACGTCTA
CCATACGTCTACCATACGTCTACCACACGTACCCAGCAGACGTACCCAGCAGACGTACCCACCAC
GCAGTCTACCCATTCAACACACCACAATATACCCTCTTCCCACAATCTCTACCCTCTACCCACAA
TCTCTAACTTTACCACCCAATCTCTGCCCTCTACCCATGTTCTCTAGCCTTTCACCCAATTCCTA
ACCTCTACTTACAATCTCACACCCTCCACCACACCGACACCACACACTATACCTACCACTCTACC
CACACTCTCTCCTATTATTCTCCCTTTCCCATCCTCCCATCCCCT
Right flanking sequence: Indices 94410 -- 94909
ATTACTTTTCCCCTTTCTTTCCCTCCTCCCTCCTCCCTCCCTCCCCTCTCCTCCTACCCCGCTAT
ATTTAGCAGCACGCTAAAATTACCGCTGGTGCAGCCGGCCCGAGGCGGCCCACCACGGTGCCACC
CACCCTCCCGACTGCCGCCGCCCTCCTCCACCACCCCTCACCCCACCCGCCACCGCTCCCCGTTC
CCTGATCGACCCAACCCTATTGTATGCGAAAAAATAATCTGAGGAACGTAAACAACACCTGACCC
GAGATCGCGGCCGCACAACCACCCACCGGCCTGTAACCAGCCAAGCGCACCACCCACACCCACAC
ACCCACACACCCACATCACCCAACCTACACCCATTCGCGTTCCACCCCACCCACCCGCTTTAACC
CTCTCGTGGAATCTCCCTCCACACCCTCCTCCCTCTCCCTCCTCGCACCTCCTCGCGCTCGCCGA
ACCTTTGTTCCCATCCGTCGCGCGCCAGGACAAATTTTCTTCTGG
Found at i:94450 original size:18 final size:18
Alignment explanation
Indices: 94429--94463 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
94419 CCCCTTTCTT
94429 TCCCTCCTCC-CTCCTCCC
1 TCCCTCC-CCTCTCCTCCC
94447 TCCCTCCCCTCTCCTCC
1 TCCCTCCCCTCTCCTCC
94464 TACCCCGCTA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 2 0.12
18 14 0.88
ACGTcount: A:0.00, C:0.71, G:0.00, T:0.29
Consensus pattern (18 bp):
TCCCTCCCCTCTCCTCCC
Left flanking sequence: Indices 93929 -- 94428
AGTCTAACAGTCAGACAGCTAGTCTACATCACGCCTATACCCGCGTTTCCCCGCCTCTACCCGTA
CTACCAGCGTCCACCACCTCAATTCCTACTTCTTTCCCCGCTCGTAACCATACGTCTACCATACG
TCTACCATACGTCTACCACACGTACCCAGCAGACGTACCCAGCAGACGTACCCACCACGCAGTCT
ACCCATTCAACACACCACAATATACCCTCTTCCCACAATCTCTACCCTCTACCCACAATCTCTAA
CTTTACCACCCAATCTCTGCCCTCTACCCATGTTCTCTAGCCTTTCACCCAATTCCTAACCTCTA
CTTACAATCTCACACCCTCCACCACACCGACACCACACACTATACCTACCACTCTACCCACACTC
TCTCCTATTATTCTCCCTTTCCCATCCTCCCATCCCCTTTCCACCCTCCTTTCCACCGTCTCCTT
CCACCGTCTCCTATCCATCGTCTCCTATTACTTTTCCCCTTTCTT
Right flanking sequence: Indices 94464 -- 94963
TACCCCGCTATATTTAGCAGCACGCTAAAATTACCGCTGGTGCAGCCGGCCCGAGGCGGCCCACC
ACGGTGCCACCCACCCTCCCGACTGCCGCCGCCCTCCTCCACCACCCCTCACCCCACCCGCCACC
GCTCCCCGTTCCCTGATCGACCCAACCCTATTGTATGCGAAAAAATAATCTGAGGAACGTAAACA
ACACCTGACCCGAGATCGCGGCCGCACAACCACCCACCGGCCTGTAACCAGCCAAGCGCACCACC
CACACCCACACACCCACACACCCACATCACCCAACCTACACCCATTCGCGTTCCACCCCACCCAC
CCGCTTTAACCCTCTCGTGGAATCTCCCTCCACACCCTCCTCCCTCTCCCTCCTCGCACCTCCTC
GCGCTCGCCGAACCTTTGTTCCCATCCGTCGCGCGCCAGGACAAATTTTCTTCTGGCCAGCTAAC
CCCACGAATAACCCGCCCGGTCTCTCGGTCTGTCCACGGCGCCCC
Found at i:94737 original size:8 final size:8
Alignment explanation
Indices: 94724--94756 Score: 57
Period size: 8 Copynumber: 4.0 Consensus size: 8
94714 GCGCACCACC
94724 CACACCCA
1 CACACCCA
94732 CACACCCA
1 CACACCCA
94740 CACACCCA
1 CACACCCA
94748 CATCACCCA
1 CA-CACCCA
94757 ACCTACACCC
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
8 18 0.75
9 6 0.25
ACGTcount: A:0.36, C:0.61, G:0.00, T:0.03
Consensus pattern (8 bp):
CACACCCA
Left flanking sequence: Indices 94224 -- 94723
TCTAGCCTTTCACCCAATTCCTAACCTCTACTTACAATCTCACACCCTCCACCACACCGACACCA
CACACTATACCTACCACTCTACCCACACTCTCTCCTATTATTCTCCCTTTCCCATCCTCCCATCC
CCTTTCCACCCTCCTTTCCACCGTCTCCTTCCACCGTCTCCTATCCATCGTCTCCTATTACTTTT
CCCCTTTCTTTCCCTCCTCCCTCCTCCCTCCCTCCCCTCTCCTCCTACCCCGCTATATTTAGCAG
CACGCTAAAATTACCGCTGGTGCAGCCGGCCCGAGGCGGCCCACCACGGTGCCACCCACCCTCCC
GACTGCCGCCGCCCTCCTCCACCACCCCTCACCCCACCCGCCACCGCTCCCCGTTCCCTGATCGA
CCCAACCCTATTGTATGCGAAAAAATAATCTGAGGAACGTAAACAACACCTGACCCGAGATCGCG
GCCGCACAACCACCCACCGGCCTGTAACCAGCCAAGCGCACCACC
Right flanking sequence: Indices 94757 -- 95256
ACCTACACCCATTCGCGTTCCACCCCACCCACCCGCTTTAACCCTCTCGTGGAATCTCCCTCCAC
ACCCTCCTCCCTCTCCCTCCTCGCACCTCCTCGCGCTCGCCGAACCTTTGTTCCCATCCGTCGCG
CGCCAGGACAAATTTTCTTCTGGCCAGCTAACCCCACGAATAACCCGCCCGGTCTCTCGGTCTGT
CCACGGCGCCCCGCTCCTGCCTCTGTTCCCCCGTTTGCGCCCGAGCCCCCCGCCGCAGGCGCCTC
CCCCGTTTTCCCCCCCGAAAAAGCCCGCCCCGACCGCGGGCCGTGGATGATCCCGCGGGCCATGT
ACGACAAGTCGCCCCAGCCCAGCCACGTGCTGCTGCTGCTGCTGCTGCTGTTCCACTTCCAGCAC
CAGCGGTCGCAGTCCCAGACCCACGGCGCCTCGCCGCTGCTGCAACCGCTGCCCCAGGGTTACCA
ACCCATCCGCCACGACCGCCCGCCGCTGCTGTGGATGCAGTTGAT
Found at i:95459 original size:12 final size:12
Alignment explanation
Indices: 95444--95484 Score: 73
Period size: 12 Copynumber: 3.4 Consensus size: 12
95434 AGCAGGCAGC
95444 GCGGCACCCAAT
1 GCGGCACCCAAT
*
95456 GCGGCAACCAAT
1 GCGGCACCCAAT
95468 GCGGCACCCAAT
1 GCGGCACCCAAT
95480 GCGGC
1 GCGGC
95485 CAACGCGTTA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
12 27 1.00
ACGTcount: A:0.24, C:0.39, G:0.29, T:0.07
Consensus pattern (12 bp):
GCGGCACCCAAT
Left flanking sequence: Indices 94944 -- 95443
CGGTCTGTCCACGGCGCCCCGCTCCTGCCTCTGTTCCCCCGTTTGCGCCCGAGCCCCCCGCCGCA
GGCGCCTCCCCCGTTTTCCCCCCCGAAAAAGCCCGCCCCGACCGCGGGCCGTGGATGATCCCGCG
GGCCATGTACGACAAGTCGCCCCAGCCCAGCCACGTGCTGCTGCTGCTGCTGCTGCTGTTCCACT
TCCAGCACCAGCGGTCGCAGTCCCAGACCCACGGCGCCTCGCCGCTGCTGCAACCGCTGCCCCAG
GGTTACCAACCCATCCGCCACGACCGCCCGCCGCTGCTGTGGATGCAGTTGATCCCGCCGATGCC
GCTGCCGCCGCCGCCGCCGCAGCCGGCGCTGCCCAACGACGAGTTTGACTTTGGCGCCGACGCCC
ACCACACCCCGCGCCAGCTGCTAAAGCCGTCGCAGCGCCACCTGATGGCGATCCTGCCGATCTCG
CCTCCGGAGGCACCCACCGATGTGGCAGGCAACGTAGCAGGCAGC
Right flanking sequence: Indices 95485 -- 95984
CAACGCGTTATCGGCACCCAAACACGGCGCCGCACCCACTGCGGCACCGGCACCCAAACACGGGT
TCAACTTCTACACCAACGCGCAGCCACGGCCGCCACAGGCCCCGGTGCCGGACGCCCGCCGCAAC
ATGCACATCCGCCAGGTGTCCGGGCTGTCGGTGCTGAGCGGACCACGCCTGCCGCAGCCGCTGCA
GTTGCCGCCGGGCACGCTCCCGCTGGTGCCGCCCGCGATGTATCTGCAGAGCCGCCCGGCGTACC
ACGGGTTCCAGGCGCTGGCGCCGTCGCTGGTGCCTCCACAGCAACAGCCGCCGCACCAGCTGCCG
CCGCCGAGCCGGCGCAACCCGTTTTTGGAAAAGAACGACAAGAGCCAGGGCTATGGGCCGAGCTA
CGGGCTGGGCCAGAGCCAGAGCCAGAGCTACGGGCTGAGTGTGGGCCCTCAAAGCTATGGTCTGG
GCCAGAGCATGGGTCAGAGCCAGTCTCAGAGCCAGGCTCAGAACC
Found at i:95968 original size:12 final size:12
Alignment explanation
Indices: 95953--95993 Score: 64
Period size: 12 Copynumber: 3.4 Consensus size: 12
95943 AGAGCATGGG
*
95953 TCAGAGCCAGTC
1 TCAGAGCCAGGC
95965 TCAGAGCCAGGC
1 TCAGAGCCAGGC
*
95977 TCAGAACCAGGC
1 TCAGAGCCAGGC
95989 TCAGA
1 TCAGA
95994 ATGCTCACCA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
12 27 1.00
ACGTcount: A:0.29, C:0.32, G:0.27, T:0.12
Consensus pattern (12 bp):
TCAGAGCCAGGC
Left flanking sequence: Indices 95453 -- 95952
AATGCGGCAACCAATGCGGCACCCAATGCGGCCAACGCGTTATCGGCACCCAAACACGGCGCCGC
ACCCACTGCGGCACCGGCACCCAAACACGGGTTCAACTTCTACACCAACGCGCAGCCACGGCCGC
CACAGGCCCCGGTGCCGGACGCCCGCCGCAACATGCACATCCGCCAGGTGTCCGGGCTGTCGGTG
CTGAGCGGACCACGCCTGCCGCAGCCGCTGCAGTTGCCGCCGGGCACGCTCCCGCTGGTGCCGCC
CGCGATGTATCTGCAGAGCCGCCCGGCGTACCACGGGTTCCAGGCGCTGGCGCCGTCGCTGGTGC
CTCCACAGCAACAGCCGCCGCACCAGCTGCCGCCGCCGAGCCGGCGCAACCCGTTTTTGGAAAAG
AACGACAAGAGCCAGGGCTATGGGCCGAGCTACGGGCTGGGCCAGAGCCAGAGCCAGAGCTACGG
GCTGAGTGTGGGCCCTCAAAGCTATGGTCTGGGCCAGAGCATGGG
Right flanking sequence: Indices 95994 -- 96493
ATGCTCACCAATCTCGAAACCAGTCTCAGAGCCAGCCCTACCACAGCCACAGCCAGTCTCAGTCC
CACAACCAGCCTCAGAACCAACCCGGCCAACCTGGCCAACCCGGCCATCCCCACGCGTTCCAGCA
CCAGCCCCAGGGCTACTACCACCCGGCGCAGTCGCCGCCGTCCCAGCCGTACCACTACGCCAACA
GCCACGCCAACAGCCACGCCAACAGCCTGCCCAAGCCGCTGGCACCCGCGCCGCCCCAGGGCCGG
CCGCAGCTCTCGCCGTTCCGCCCGCTGCTGGAGGGCCAGACGGCGCAGCAGCCGCTGGTGGTGGA
GCCGCGCCAGCGCCTGGTGTCGCTCCAGCAGCCGCGCTCGCAGCCCGCGGGCGGGTACGGCTTTG
CGGTGACGCCGCCGGTGGGAGGGAGCCAGGGCCAGGCCAAGGTGATCAGCCAGGCCAGCCAGGCG
TTGAGCCACCAGGCCCAGGCCCAGGCCCAGGCTCAGGCTCAGGCT
Found at i:96090 original size:9 final size:9
Alignment explanation
Indices: 96076--96105 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
96066 AGCCTCAGAA
96076 CCAACCCGG
1 CCAACCCGG
*
96085 CCAACCTGG
1 CCAACCCGG
96094 CCAACCCGG
1 CCAACCCGG
96103 CCA
1 CCA
96106 TCCCCACGCG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.23, C:0.53, G:0.20, T:0.03
Consensus pattern (9 bp):
CCAACCCGG
Left flanking sequence: Indices 95576 -- 96075
CGGCCGCCACAGGCCCCGGTGCCGGACGCCCGCCGCAACATGCACATCCGCCAGGTGTCCGGGCT
GTCGGTGCTGAGCGGACCACGCCTGCCGCAGCCGCTGCAGTTGCCGCCGGGCACGCTCCCGCTGG
TGCCGCCCGCGATGTATCTGCAGAGCCGCCCGGCGTACCACGGGTTCCAGGCGCTGGCGCCGTCG
CTGGTGCCTCCACAGCAACAGCCGCCGCACCAGCTGCCGCCGCCGAGCCGGCGCAACCCGTTTTT
GGAAAAGAACGACAAGAGCCAGGGCTATGGGCCGAGCTACGGGCTGGGCCAGAGCCAGAGCCAGA
GCTACGGGCTGAGTGTGGGCCCTCAAAGCTATGGTCTGGGCCAGAGCATGGGTCAGAGCCAGTCT
CAGAGCCAGGCTCAGAACCAGGCTCAGAATGCTCACCAATCTCGAAACCAGTCTCAGAGCCAGCC
CTACCACAGCCACAGCCAGTCTCAGTCCCACAACCAGCCTCAGAA
Right flanking sequence: Indices 96106 -- 96605
TCCCCACGCGTTCCAGCACCAGCCCCAGGGCTACTACCACCCGGCGCAGTCGCCGCCGTCCCAGC
CGTACCACTACGCCAACAGCCACGCCAACAGCCACGCCAACAGCCTGCCCAAGCCGCTGGCACCC
GCGCCGCCCCAGGGCCGGCCGCAGCTCTCGCCGTTCCGCCCGCTGCTGGAGGGCCAGACGGCGCA
GCAGCCGCTGGTGGTGGAGCCGCGCCAGCGCCTGGTGTCGCTCCAGCAGCCGCGCTCGCAGCCCG
CGGGCGGGTACGGCTTTGCGGTGACGCCGCCGGTGGGAGGGAGCCAGGGCCAGGCCAAGGTGATC
AGCCAGGCCAGCCAGGCGTTGAGCCACCAGGCCCAGGCCCAGGCCCAGGCTCAGGCTCAGGCTCA
GGCCCAGGCTCAGACCATGGCTCAGTCCAAGGCTCCTAACCTGTCTATGAGTAATCCGACCATGG
GCTCTGGCCAGCCTCAGACCACTGGCCAGGCCCATTCTCAGACCA
Found at i:96197 original size:12 final size:12
Alignment explanation
Indices: 96180--96215 Score: 72
Period size: 12 Copynumber: 3.0 Consensus size: 12
96170 CCGTACCACT
96180 ACGCCAACAGCC
1 ACGCCAACAGCC
96192 ACGCCAACAGCC
1 ACGCCAACAGCC
96204 ACGCCAACAGCC
1 ACGCCAACAGCC
96216 TGCCCAAGCC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 24 1.00
ACGTcount: A:0.33, C:0.50, G:0.17, T:0.00
Consensus pattern (12 bp):
ACGCCAACAGCC
Left flanking sequence: Indices 95680 -- 96179
GTTGCCGCCGGGCACGCTCCCGCTGGTGCCGCCCGCGATGTATCTGCAGAGCCGCCCGGCGTACC
ACGGGTTCCAGGCGCTGGCGCCGTCGCTGGTGCCTCCACAGCAACAGCCGCCGCACCAGCTGCCG
CCGCCGAGCCGGCGCAACCCGTTTTTGGAAAAGAACGACAAGAGCCAGGGCTATGGGCCGAGCTA
CGGGCTGGGCCAGAGCCAGAGCCAGAGCTACGGGCTGAGTGTGGGCCCTCAAAGCTATGGTCTGG
GCCAGAGCATGGGTCAGAGCCAGTCTCAGAGCCAGGCTCAGAACCAGGCTCAGAATGCTCACCAA
TCTCGAAACCAGTCTCAGAGCCAGCCCTACCACAGCCACAGCCAGTCTCAGTCCCACAACCAGCC
TCAGAACCAACCCGGCCAACCTGGCCAACCCGGCCATCCCCACGCGTTCCAGCACCAGCCCCAGG
GCTACTACCACCCGGCGCAGTCGCCGCCGTCCCAGCCGTACCACT
Right flanking sequence: Indices 96216 -- 96715
TGCCCAAGCCGCTGGCACCCGCGCCGCCCCAGGGCCGGCCGCAGCTCTCGCCGTTCCGCCCGCTG
CTGGAGGGCCAGACGGCGCAGCAGCCGCTGGTGGTGGAGCCGCGCCAGCGCCTGGTGTCGCTCCA
GCAGCCGCGCTCGCAGCCCGCGGGCGGGTACGGCTTTGCGGTGACGCCGCCGGTGGGAGGGAGCC
AGGGCCAGGCCAAGGTGATCAGCCAGGCCAGCCAGGCGTTGAGCCACCAGGCCCAGGCCCAGGCC
CAGGCTCAGGCTCAGGCTCAGGCCCAGGCTCAGACCATGGCTCAGTCCAAGGCTCCTAACCTGTC
TATGAGTAATCCGACCATGGGCTCTGGCCAGCCTCAGACCACTGGCCAGGCCCATTCTCAGACCA
GCCAGGTTCATCAGACCAGCCAGGCCCACCAGACCAGCCAGGCCCACCAGACCAGCCACCCTAAT
TCGACCAATTCTCACACTAGTGCCTCTGGTGTTCCTGGTGCCTCT
Found at i:96468 original size:6 final size:6
Alignment explanation
Indices: 96457--96504 Score: 69
Period size: 6 Copynumber: 8.0 Consensus size: 6
96447 CGTTGAGCCA
* * *
96457 CCAGGC CCAGGC CCAGGC CCAGGC TCAGGC TCAGGC TCAGGC CCAGGC
1 CCAGGC CCAGGC CCAGGC CCAGGC CCAGGC CCAGGC CCAGGC CCAGGC
96505 TCAGACCATG
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
6 40 1.00
ACGTcount: A:0.17, C:0.44, G:0.33, T:0.06
Consensus pattern (6 bp):
CCAGGC
Left flanking sequence: Indices 95957 -- 96456
AGCCAGTCTCAGAGCCAGGCTCAGAACCAGGCTCAGAATGCTCACCAATCTCGAAACCAGTCTCA
GAGCCAGCCCTACCACAGCCACAGCCAGTCTCAGTCCCACAACCAGCCTCAGAACCAACCCGGCC
AACCTGGCCAACCCGGCCATCCCCACGCGTTCCAGCACCAGCCCCAGGGCTACTACCACCCGGCG
CAGTCGCCGCCGTCCCAGCCGTACCACTACGCCAACAGCCACGCCAACAGCCACGCCAACAGCCT
GCCCAAGCCGCTGGCACCCGCGCCGCCCCAGGGCCGGCCGCAGCTCTCGCCGTTCCGCCCGCTGC
TGGAGGGCCAGACGGCGCAGCAGCCGCTGGTGGTGGAGCCGCGCCAGCGCCTGGTGTCGCTCCAG
CAGCCGCGCTCGCAGCCCGCGGGCGGGTACGGCTTTGCGGTGACGCCGCCGGTGGGAGGGAGCCA
GGGCCAGGCCAAGGTGATCAGCCAGGCCAGCCAGGCGTTGAGCCA
Right flanking sequence: Indices 96505 -- 97004
TCAGACCATGGCTCAGTCCAAGGCTCCTAACCTGTCTATGAGTAATCCGACCATGGGCTCTGGCC
AGCCTCAGACCACTGGCCAGGCCCATTCTCAGACCAGCCAGGTTCATCAGACCAGCCAGGCCCAC
CAGACCAGCCAGGCCCACCAGACCAGCCACCCTAATTCGACCAATTCTCACACTAGTGCCTCTGG
TGTTCCTGGTGCCTCTGGTGCCTCTGGTGCCTCTGCCTCTCACACGGCCTCTGGCTCCCCCACCC
TCCAGCCGGCCCAGCGACCGCCGCTCCCCCAGTCCAAGTCCTCCCAGAACGCGGTCCCCCAGCTG
ATCCAGCCCCCACGAGTGTCCGTCTCGGGCGGCTCGTCGCTGAGCACCCCACCCACCACCCAGCG
CAAGCGCCTGGTCCGCAAGAAACTGCGCAAGGTGTGCAAGGTGTGCCTGCGCGAGATCACCGGGC
AGTTTGTGCGGGCGTTGAACCTGCCGTTCCACGTGGAGTGCTTCT
Found at i:96505 original size:12 final size:12
Alignment explanation
Indices: 96458--96530 Score: 85
Period size: 12 Copynumber: 6.1 Consensus size: 12
96448 GTTGAGCCAC
*
96458 CAGGCCCAGGCC
1 CAGGCCCAGGCT
96470 CAGGCCCAGGCT
1 CAGGCCCAGGCT
*
96482 CAGGCTCAGGCT
1 CAGGCCCAGGCT
96494 CAGGCCCAGGCT
1 CAGGCCCAGGCT
*
96506 CA-GACCATGGCT
1 CAGGCCCA-GGCT
* *
96518 CAGTCCAAGGCT
1 CAGGCCCAGGCT
96530 C
1 C
96531 CTAACCTGTC
Statistics
Matches: 52, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
11 4 0.08
12 46 0.88
13 2 0.04
ACGTcount: A:0.19, C:0.40, G:0.30, T:0.11
Consensus pattern (12 bp):
CAGGCCCAGGCT
Left flanking sequence: Indices 95958 -- 96457
GCCAGTCTCAGAGCCAGGCTCAGAACCAGGCTCAGAATGCTCACCAATCTCGAAACCAGTCTCAG
AGCCAGCCCTACCACAGCCACAGCCAGTCTCAGTCCCACAACCAGCCTCAGAACCAACCCGGCCA
ACCTGGCCAACCCGGCCATCCCCACGCGTTCCAGCACCAGCCCCAGGGCTACTACCACCCGGCGC
AGTCGCCGCCGTCCCAGCCGTACCACTACGCCAACAGCCACGCCAACAGCCACGCCAACAGCCTG
CCCAAGCCGCTGGCACCCGCGCCGCCCCAGGGCCGGCCGCAGCTCTCGCCGTTCCGCCCGCTGCT
GGAGGGCCAGACGGCGCAGCAGCCGCTGGTGGTGGAGCCGCGCCAGCGCCTGGTGTCGCTCCAGC
AGCCGCGCTCGCAGCCCGCGGGCGGGTACGGCTTTGCGGTGACGCCGCCGGTGGGAGGGAGCCAG
GGCCAGGCCAAGGTGATCAGCCAGGCCAGCCAGGCGTTGAGCCAC
Right flanking sequence: Indices 96531 -- 97030
CTAACCTGTCTATGAGTAATCCGACCATGGGCTCTGGCCAGCCTCAGACCACTGGCCAGGCCCAT
TCTCAGACCAGCCAGGTTCATCAGACCAGCCAGGCCCACCAGACCAGCCAGGCCCACCAGACCAG
CCACCCTAATTCGACCAATTCTCACACTAGTGCCTCTGGTGTTCCTGGTGCCTCTGGTGCCTCTG
GTGCCTCTGCCTCTCACACGGCCTCTGGCTCCCCCACCCTCCAGCCGGCCCAGCGACCGCCGCTC
CCCCAGTCCAAGTCCTCCCAGAACGCGGTCCCCCAGCTGATCCAGCCCCCACGAGTGTCCGTCTC
GGGCGGCTCGTCGCTGAGCACCCCACCCACCACCCAGCGCAAGCGCCTGGTCCGCAAGAAACTGC
GCAAGGTGTGCAAGGTGTGCCTGCGCGAGATCACCGGGCAGTTTGTGCGGGCGTTGAACCTGCCG
TTCCACGTGGAGTGCTTCTGCTGCCACGAGTGCGGGCAGCAGTGC
Found at i:96505 original size:18 final size:18
Alignment explanation
Indices: 96457--96508 Score: 77
Period size: 18 Copynumber: 2.9 Consensus size: 18
96447 CGTTGAGCCA
*
96457 CCAGGCCCAGGCCCAGGC
1 CCAGGCCCAGGCTCAGGC
*
96475 CCAGGCTCAGGCTCAGGC
1 CCAGGCCCAGGCTCAGGC
*
96493 TCAGGCCCAGGCTCAG
1 CCAGGCCCAGGCTCAG
96509 ACCATGGCTC
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 30 1.00
ACGTcount: A:0.17, C:0.42, G:0.33, T:0.08
Consensus pattern (18 bp):
CCAGGCCCAGGCTCAGGC
Left flanking sequence: Indices 95957 -- 96456
AGCCAGTCTCAGAGCCAGGCTCAGAACCAGGCTCAGAATGCTCACCAATCTCGAAACCAGTCTCA
GAGCCAGCCCTACCACAGCCACAGCCAGTCTCAGTCCCACAACCAGCCTCAGAACCAACCCGGCC
AACCTGGCCAACCCGGCCATCCCCACGCGTTCCAGCACCAGCCCCAGGGCTACTACCACCCGGCG
CAGTCGCCGCCGTCCCAGCCGTACCACTACGCCAACAGCCACGCCAACAGCCACGCCAACAGCCT
GCCCAAGCCGCTGGCACCCGCGCCGCCCCAGGGCCGGCCGCAGCTCTCGCCGTTCCGCCCGCTGC
TGGAGGGCCAGACGGCGCAGCAGCCGCTGGTGGTGGAGCCGCGCCAGCGCCTGGTGTCGCTCCAG
CAGCCGCGCTCGCAGCCCGCGGGCGGGTACGGCTTTGCGGTGACGCCGCCGGTGGGAGGGAGCCA
GGGCCAGGCCAAGGTGATCAGCCAGGCCAGCCAGGCGTTGAGCCA
Right flanking sequence: Indices 96509 -- 97008
ACCATGGCTCAGTCCAAGGCTCCTAACCTGTCTATGAGTAATCCGACCATGGGCTCTGGCCAGCC
TCAGACCACTGGCCAGGCCCATTCTCAGACCAGCCAGGTTCATCAGACCAGCCAGGCCCACCAGA
CCAGCCAGGCCCACCAGACCAGCCACCCTAATTCGACCAATTCTCACACTAGTGCCTCTGGTGTT
CCTGGTGCCTCTGGTGCCTCTGGTGCCTCTGCCTCTCACACGGCCTCTGGCTCCCCCACCCTCCA
GCCGGCCCAGCGACCGCCGCTCCCCCAGTCCAAGTCCTCCCAGAACGCGGTCCCCCAGCTGATCC
AGCCCCCACGAGTGTCCGTCTCGGGCGGCTCGTCGCTGAGCACCCCACCCACCACCCAGCGCAAG
CGCCTGGTCCGCAAGAAACTGCGCAAGGTGTGCAAGGTGTGCCTGCGCGAGATCACCGGGCAGTT
TGTGCGGGCGTTGAACCTGCCGTTCCACGTGGAGTGCTTCTGCTG
Found at i:96621 original size:18 final size:18
Alignment explanation
Indices: 96585--96663 Score: 104
Period size: 18 Copynumber: 4.2 Consensus size: 18
96575 CAGACCACTG
96585 GCCAGGCCCATTCTCAGACCA
1 GCCAGGCCCA--C-CAGACCA
** *
96606 GCCAGGTTCATCAGACCA
1 GCCAGGCCCACCAGACCA
96624 GCCAGGCCCACCAGACCA
1 GCCAGGCCCACCAGACCA
96642 GCCAGGCCCACCAGACCA
1 GCCAGGCCCACCAGACCA
96660 GCCA
1 GCCA
96664 CCCTAATTCG
Statistics
Matches: 52, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
18 44 0.85
21 8 0.15
ACGTcount: A:0.27, C:0.44, G:0.22, T:0.08
Consensus pattern (18 bp):
GCCAGGCCCACCAGACCA
Left flanking sequence: Indices 96085 -- 96584
CCAACCTGGCCAACCCGGCCATCCCCACGCGTTCCAGCACCAGCCCCAGGGCTACTACCACCCGG
CGCAGTCGCCGCCGTCCCAGCCGTACCACTACGCCAACAGCCACGCCAACAGCCACGCCAACAGC
CTGCCCAAGCCGCTGGCACCCGCGCCGCCCCAGGGCCGGCCGCAGCTCTCGCCGTTCCGCCCGCT
GCTGGAGGGCCAGACGGCGCAGCAGCCGCTGGTGGTGGAGCCGCGCCAGCGCCTGGTGTCGCTCC
AGCAGCCGCGCTCGCAGCCCGCGGGCGGGTACGGCTTTGCGGTGACGCCGCCGGTGGGAGGGAGC
CAGGGCCAGGCCAAGGTGATCAGCCAGGCCAGCCAGGCGTTGAGCCACCAGGCCCAGGCCCAGGC
CCAGGCTCAGGCTCAGGCTCAGGCCCAGGCTCAGACCATGGCTCAGTCCAAGGCTCCTAACCTGT
CTATGAGTAATCCGACCATGGGCTCTGGCCAGCCTCAGACCACTG
Right flanking sequence: Indices 96664 -- 97163
CCCTAATTCGACCAATTCTCACACTAGTGCCTCTGGTGTTCCTGGTGCCTCTGGTGCCTCTGGTG
CCTCTGCCTCTCACACGGCCTCTGGCTCCCCCACCCTCCAGCCGGCCCAGCGACCGCCGCTCCCC
CAGTCCAAGTCCTCCCAGAACGCGGTCCCCCAGCTGATCCAGCCCCCACGAGTGTCCGTCTCGGG
CGGCTCGTCGCTGAGCACCCCACCCACCACCCAGCGCAAGCGCCTGGTCCGCAAGAAACTGCGCA
AGGTGTGCAAGGTGTGCCTGCGCGAGATCACCGGGCAGTTTGTGCGGGCGTTGAACCTGCCGTTC
CACGTGGAGTGCTTCTGCTGCCACGAGTGCGGGCAGCAGTGCAGCGCCAAGTTCTTCCCCTACGA
GGTGGCGCAGCCGCACGGCGACCCGGTGTTGGTGGCGCTCTGCGAGTACGACTACTTCAAGAAGC
TCGACCTCATCTGCTTCCTGTGCAACAAGGCGCTCCGCGGGCCCT
Found at i:96717 original size:9 final size:9
Alignment explanation
Indices: 96690--96734 Score: 65
Period size: 9 Copynumber: 5.0 Consensus size: 9
96680 TCTCACACTA
96690 GTGCCTCTG
1 GTGCCTCTG
*
96699 GTG-TTCCTG
1 GTGCCT-CTG
96708 GTGCCTCTG
1 GTGCCTCTG
96717 GTGCCTCTG
1 GTGCCTCTG
96726 GTGCCTCTG
1 GTGCCTCTG
96735 CCTCTCACAC
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
8 1 0.03
9 30 0.94
10 1 0.03
ACGTcount: A:0.00, C:0.31, G:0.33, T:0.36
Consensus pattern (9 bp):
GTGCCTCTG
Left flanking sequence: Indices 96190 -- 96689
CCACGCCAACAGCCACGCCAACAGCCTGCCCAAGCCGCTGGCACCCGCGCCGCCCCAGGGCCGGC
CGCAGCTCTCGCCGTTCCGCCCGCTGCTGGAGGGCCAGACGGCGCAGCAGCCGCTGGTGGTGGAG
CCGCGCCAGCGCCTGGTGTCGCTCCAGCAGCCGCGCTCGCAGCCCGCGGGCGGGTACGGCTTTGC
GGTGACGCCGCCGGTGGGAGGGAGCCAGGGCCAGGCCAAGGTGATCAGCCAGGCCAGCCAGGCGT
TGAGCCACCAGGCCCAGGCCCAGGCCCAGGCTCAGGCTCAGGCTCAGGCCCAGGCTCAGACCATG
GCTCAGTCCAAGGCTCCTAACCTGTCTATGAGTAATCCGACCATGGGCTCTGGCCAGCCTCAGAC
CACTGGCCAGGCCCATTCTCAGACCAGCCAGGTTCATCAGACCAGCCAGGCCCACCAGACCAGCC
AGGCCCACCAGACCAGCCACCCTAATTCGACCAATTCTCACACTA
Right flanking sequence: Indices 96735 -- 97234
CCTCTCACACGGCCTCTGGCTCCCCCACCCTCCAGCCGGCCCAGCGACCGCCGCTCCCCCAGTCC
AAGTCCTCCCAGAACGCGGTCCCCCAGCTGATCCAGCCCCCACGAGTGTCCGTCTCGGGCGGCTC
GTCGCTGAGCACCCCACCCACCACCCAGCGCAAGCGCCTGGTCCGCAAGAAACTGCGCAAGGTGT
GCAAGGTGTGCCTGCGCGAGATCACCGGGCAGTTTGTGCGGGCGTTGAACCTGCCGTTCCACGTG
GAGTGCTTCTGCTGCCACGAGTGCGGGCAGCAGTGCAGCGCCAAGTTCTTCCCCTACGAGGTGGC
GCAGCCGCACGGCGACCCGGTGTTGGTGGCGCTCTGCGAGTACGACTACTTCAAGAAGCTCGACC
TCATCTGCTTCCTGTGCAACAAGGCGCTCCGCGGGCCCTACATCACCGCGCTCGGCAACAAGTAC
CACCTCGAGCACTTCAAGTGCGCGGTGTGCCAGAAGGTGTTTGAG
Found at i:97607 original size:12 final size:12
Alignment explanation
Indices: 97576--97617 Score: 57
Period size: 12 Copynumber: 3.5 Consensus size: 12
97566 GTGAGCGGGC
*
97576 CAATGCCACAGG
1 CAATGCCACAAG
**
97588 CAGCGCCACAAG
1 CAATGCCACAAG
97600 CAATGCCACAAG
1 CAATGCCACAAG
97612 CAATGC
1 CAATGC
97618 TGCTGGTGGT
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
12 25 1.00
ACGTcount: A:0.36, C:0.36, G:0.21, T:0.07
Consensus pattern (12 bp):
CAATGCCACAAG
Left flanking sequence: Indices 97076 -- 97575
CCGGTGTTGGTGGCGCTCTGCGAGTACGACTACTTCAAGAAGCTCGACCTCATCTGCTTCCTGTG
CAACAAGGCGCTCCGCGGGCCCTACATCACCGCGCTCGGCAACAAGTACCACCTCGAGCACTTCA
AGTGCGCGGTGTGCCAGAAGGTGTTTGAGGCGGACGAGCTGTACTACGAGCACAACAACGACATC
TACTGCCACTTCCACTACCTGCGCCAGTTTGCCGCCAAGTGCGAGGGGTGCCATCTGAGCATTGT
CAAGCAGTTTGTCGAGTTGTTTCGCGGTGGGCGCAACCAGCAGTGGCACCCCGAGTGCTACATGG
TGCACAAGTTCTGGAACGTGAGCATCGACACCGACCAGGTGGGGTTGTTGGCCAAGTACGGGTTG
ACGCACCCGCGGGCGGTGTTGGCGCGGCTCACCCAGGAGGACGAGCTGGACGTGTCGTCGGGGAG
CGCTGCGTCGGGTGGGACGAATGCGAGCAGTGTGAGTGAGCGGGC
Right flanking sequence: Indices 97618 -- 98117
TGCTGGTGGTGCCAGTGGTGTTTCTGGTGCTGGTGGTGCTAGTAATACTGGAGTTTCTGGTGTTT
CTGGTGCTACTGGTGCTGGTGCTTCTGGCTCTGGTCCCTCCGGCTCTGGTCCCACTGGCTCTGGT
CCCGGTTCCACCGCTGCTGCTTCTTCTACCGAACCAGGCACGGCTCTCATCGCCACCACCTCCAA
CCCCACCTCCAACCCCTCCACCAAGTCCTCTCGCCCACCCGTCCTGGACGCATCCCTCCTCTTCG
CCATCGAACTGCAGATCGAGCACGTGGTCATGAACTGCTGGCTCACCCTCCTGGGCTACGAGGAA
GCCACCGCCGCGTGCATCCTGGACATGTTGCTCAACGCCCACATCCTGAACCAGGCCCACGGCAT
CCTCGCCACAGGCAAGCTCATCCTCATGGTGGAGGTGCTCTTCGCGGCGATGGACACGGTGCTCG
CGGCCCAGCAGCTGGACACGGTGGCCGCACGCGTGCCCCCCAGCA
Found at i:97716 original size:15 final size:15
Alignment explanation
Indices: 97707--97750 Score: 70
Period size: 15 Copynumber: 2.9 Consensus size: 15
97697 GCTGGTGCTT
*
97707 CTGGCTCTGGTCCCT
1 CTGGCTCTGGTCCCA
*
97722 CCGGCTCTGGTCCCA
1 CTGGCTCTGGTCCCA
97737 CTGGCTCTGGTCCC
1 CTGGCTCTGGTCCC
97751 GGTTCCACCG
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 26 1.00
ACGTcount: A:0.02, C:0.43, G:0.27, T:0.27
Consensus pattern (15 bp):
CTGGCTCTGGTCCCA
Left flanking sequence: Indices 97207 -- 97706
GTGCGCGGTGTGCCAGAAGGTGTTTGAGGCGGACGAGCTGTACTACGAGCACAACAACGACATCT
ACTGCCACTTCCACTACCTGCGCCAGTTTGCCGCCAAGTGCGAGGGGTGCCATCTGAGCATTGTC
AAGCAGTTTGTCGAGTTGTTTCGCGGTGGGCGCAACCAGCAGTGGCACCCCGAGTGCTACATGGT
GCACAAGTTCTGGAACGTGAGCATCGACACCGACCAGGTGGGGTTGTTGGCCAAGTACGGGTTGA
CGCACCCGCGGGCGGTGTTGGCGCGGCTCACCCAGGAGGACGAGCTGGACGTGTCGTCGGGGAGC
GCTGCGTCGGGTGGGACGAATGCGAGCAGTGTGAGTGAGCGGGCCAATGCCACAGGCAGCGCCAC
AAGCAATGCCACAAGCAATGCTGCTGGTGGTGCCAGTGGTGTTTCTGGTGCTGGTGGTGCTAGTA
ATACTGGAGTTTCTGGTGTTTCTGGTGCTACTGGTGCTGGTGCTT
Right flanking sequence: Indices 97751 -- 98250
GGTTCCACCGCTGCTGCTTCTTCTACCGAACCAGGCACGGCTCTCATCGCCACCACCTCCAACCC
CACCTCCAACCCCTCCACCAAGTCCTCTCGCCCACCCGTCCTGGACGCATCCCTCCTCTTCGCCA
TCGAACTGCAGATCGAGCACGTGGTCATGAACTGCTGGCTCACCCTCCTGGGCTACGAGGAAGCC
ACCGCCGCGTGCATCCTGGACATGTTGCTCAACGCCCACATCCTGAACCAGGCCCACGGCATCCT
CGCCACAGGCAAGCTCATCCTCATGGTGGAGGTGCTCTTCGCGGCGATGGACACGGTGCTCGCGG
CCCAGCAGCTGGACACGGTGGCCGCACGCGTGCCCCCCAGCACCGACGCCGACGACGAGTACTTC
CAGGCGCTCCGCAAGGAGCCCCGCAACATCCTGGGCAAGATCATGTCCTACCTCGCCATCCTCCG
CAAGCTGCTGCACATCTCGCTGCTGGGCACGTTGCTGACGGAGCT
Found at i:97820 original size:12 final size:12
Alignment explanation
Indices: 97803--97828 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
97793 CTCATCGCCA
97803 CCACCTCCAACC
1 CCACCTCCAACC
97815 CCACCTCCAACC
1 CCACCTCCAACC
97827 CC
1 CC
97829 TCCACCAAGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.23, C:0.69, G:0.00, T:0.08
Consensus pattern (12 bp):
CCACCTCCAACC
Left flanking sequence: Indices 97303 -- 97802
CGCCAAGTGCGAGGGGTGCCATCTGAGCATTGTCAAGCAGTTTGTCGAGTTGTTTCGCGGTGGGC
GCAACCAGCAGTGGCACCCCGAGTGCTACATGGTGCACAAGTTCTGGAACGTGAGCATCGACACC
GACCAGGTGGGGTTGTTGGCCAAGTACGGGTTGACGCACCCGCGGGCGGTGTTGGCGCGGCTCAC
CCAGGAGGACGAGCTGGACGTGTCGTCGGGGAGCGCTGCGTCGGGTGGGACGAATGCGAGCAGTG
TGAGTGAGCGGGCCAATGCCACAGGCAGCGCCACAAGCAATGCCACAAGCAATGCTGCTGGTGGT
GCCAGTGGTGTTTCTGGTGCTGGTGGTGCTAGTAATACTGGAGTTTCTGGTGTTTCTGGTGCTAC
TGGTGCTGGTGCTTCTGGCTCTGGTCCCTCCGGCTCTGGTCCCACTGGCTCTGGTCCCGGTTCCA
CCGCTGCTGCTTCTTCTACCGAACCAGGCACGGCTCTCATCGCCA
Right flanking sequence: Indices 97829 -- 98328
TCCACCAAGTCCTCTCGCCCACCCGTCCTGGACGCATCCCTCCTCTTCGCCATCGAACTGCAGAT
CGAGCACGTGGTCATGAACTGCTGGCTCACCCTCCTGGGCTACGAGGAAGCCACCGCCGCGTGCA
TCCTGGACATGTTGCTCAACGCCCACATCCTGAACCAGGCCCACGGCATCCTCGCCACAGGCAAG
CTCATCCTCATGGTGGAGGTGCTCTTCGCGGCGATGGACACGGTGCTCGCGGCCCAGCAGCTGGA
CACGGTGGCCGCACGCGTGCCCCCCAGCACCGACGCCGACGACGAGTACTTCCAGGCGCTCCGCA
AGGAGCCCCGCAACATCCTGGGCAAGATCATGTCCTACCTCGCCATCCTCCGCAAGCTGCTGCAC
ATCTCGCTGCTGGGCACGTTGCTGACGGAGCTCTTGCTGGTGATCACCGGGTGTGCCCACTACTT
GAAGCTCTTGATCCGCATCGGGTTGCACAACGCGCTCAAGGTCAA
Found at i:100623 original size:13 final size:13
Alignment explanation
Indices: 100605--100632 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
100595 AGAGGGGGTG
100605 GGGTGGTAGTAGT
1 GGGTGGTAGTAGT
100618 GGGTGGTAGTAGT
1 GGGTGGTAGTAGT
100631 GG
1 GG
100633 TGGAGGTGGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.14, C:0.00, G:0.57, T:0.29
Consensus pattern (13 bp):
GGGTGGTAGTAGT
Left flanking sequence: Indices 100105 -- 100604
GGGGTCCAAGATGGACATCCACAACTTGGCGACGGTGATTGCGCCCAACGTGCTCTTTTCGAAGC
CTGCCAGCGCCAACGGCGGCGACGAGGGGATCCACGTGCGCGGCGAGGGGTTCTTCCACGCCATC
GAGGTGGTGAGCCAGATGATCGAGCAGCACGAGGAGTTTTCCATCATTCCCGACGACTTGTTGCA
GTTCTACGACCGGTGCGGCTTTGACCAGGCCAAGCCCGAGCTGCTCTCCACCAAGGACATTGTGG
CGCGGGTCGACAAGCAGACCAAGGAGGACGGGCGGTTCTTTGAGAAGCAGTTGGCGCAGATGGCC
GAGCCGCACGAGCTGCCGTACCAGGAGGTGCGGCTGAACACGGTGACCCGCGGGCACACCCAGCC
GCGGGTGGAGCACCATGGAGAGACTACAAACATCTAATCTGTATTATGTACCTTATAGACTGGCG
TCCGCGCCGAATGCACGTGCCGTTCACGGAAGAGGAGAGGGGGTG
Right flanking sequence: Indices 100633 -- 101132
TGGAGGTGGTGGAGGTGGTGGAGGTGGTTTGAGAGTAGTGGTGTAGTGGGGGGAAGTTAGCGGTG
GTGGTGAGGTAGTGGTGGTGTGAGAGTAGTGGTGTGAGAGTAGTTGTGTAGTTGTGATGGTGAGG
GTGTAGATGAGTTCATGAATAGCCAATATGGTTGGTGGTGGCTTTTTTGTACAGTCTTTGAGTTT
TGACTACGGGTTTGATTCTTATGGCTATCATTTCACTGACGCATTATGTCGCATTGATGCCTGTC
TAATAAGTACTAAAACAACTCAAAACGGAACCGAGGAAGAATACGAAAATGAAATAAACGGGCAT
TGCCTACCCCCTTGAAACCATCTTAGCTCTATGCTGCACGCCCTACTACCCCCCATCACACCCTA
CTACATCCTACCATCTGTCTACAACTACTAAACAACACAAAACCTAACCGAGGCAGAAAAGGAAA
ACGAAACGGGTATTACCTACCCACTTAAGCCATATTAGCTCCCTG
Found at i:100641 original size:9 final size:9
Alignment explanation
Indices: 100629--100660 Score: 64
Period size: 9 Copynumber: 3.6 Consensus size: 9
100619 GGTGGTAGTA
100629 GTGGTGGAG
1 GTGGTGGAG
100638 GTGGTGGAG
1 GTGGTGGAG
100647 GTGGTGGAG
1 GTGGTGGAG
100656 GTGGT
1 GTGGT
100661 TTGAGAGTAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 23 1.00
ACGTcount: A:0.09, C:0.00, G:0.66, T:0.25
Consensus pattern (9 bp):
GTGGTGGAG
Left flanking sequence: Indices 100129 -- 100628
CTTGGCGACGGTGATTGCGCCCAACGTGCTCTTTTCGAAGCCTGCCAGCGCCAACGGCGGCGACG
AGGGGATCCACGTGCGCGGCGAGGGGTTCTTCCACGCCATCGAGGTGGTGAGCCAGATGATCGAG
CAGCACGAGGAGTTTTCCATCATTCCCGACGACTTGTTGCAGTTCTACGACCGGTGCGGCTTTGA
CCAGGCCAAGCCCGAGCTGCTCTCCACCAAGGACATTGTGGCGCGGGTCGACAAGCAGACCAAGG
AGGACGGGCGGTTCTTTGAGAAGCAGTTGGCGCAGATGGCCGAGCCGCACGAGCTGCCGTACCAG
GAGGTGCGGCTGAACACGGTGACCCGCGGGCACACCCAGCCGCGGGTGGAGCACCATGGAGAGAC
TACAAACATCTAATCTGTATTATGTACCTTATAGACTGGCGTCCGCGCCGAATGCACGTGCCGTT
CACGGAAGAGGAGAGGGGGTGGGGTGGTAGTAGTGGGTGGTAGTA
Right flanking sequence: Indices 100661 -- 101160
TTGAGAGTAGTGGTGTAGTGGGGGGAAGTTAGCGGTGGTGGTGAGGTAGTGGTGGTGTGAGAGTA
GTGGTGTGAGAGTAGTTGTGTAGTTGTGATGGTGAGGGTGTAGATGAGTTCATGAATAGCCAATA
TGGTTGGTGGTGGCTTTTTTGTACAGTCTTTGAGTTTTGACTACGGGTTTGATTCTTATGGCTAT
CATTTCACTGACGCATTATGTCGCATTGATGCCTGTCTAATAAGTACTAAAACAACTCAAAACGG
AACCGAGGAAGAATACGAAAATGAAATAAACGGGCATTGCCTACCCCCTTGAAACCATCTTAGCT
CTATGCTGCACGCCCTACTACCCCCCATCACACCCTACTACATCCTACCATCTGTCTACAACTAC
TAAACAACACAAAACCTAACCGAGGCAGAAAAGGAAAACGAAACGGGTATTACCTACCCACTTAA
GCCATATTAGCTCCCTGCTACACCCCTACTACACCTACCACCCCT
Found at i:100714 original size:14 final size:15
Alignment explanation
Indices: 100695--100741 Score: 62
Period size: 14 Copynumber: 3.1 Consensus size: 15
100685 GAAGTTAGCG
100695 GTGGTGGTGAG-GTA
1 GTGGTGGTGAGAGTA
100709 GTGGTGGTGTGAGAGTA
1 GTGGT-G-GTGAGAGTA
100726 GTGGT-GTGAGAGTA
1 GTGGTGGTGAGAGTA
100740 GT
1 GT
100742 TGTGTAGTTG
Statistics
Matches: 30, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
14 16 0.53
15 1 0.03
16 5 0.17
17 8 0.27
ACGTcount: A:0.17, C:0.00, G:0.53, T:0.30
Consensus pattern (15 bp):
GTGGTGGTGAGAGTA
Left flanking sequence: Indices 100195 -- 100694
GGGGATCCACGTGCGCGGCGAGGGGTTCTTCCACGCCATCGAGGTGGTGAGCCAGATGATCGAGC
AGCACGAGGAGTTTTCCATCATTCCCGACGACTTGTTGCAGTTCTACGACCGGTGCGGCTTTGAC
CAGGCCAAGCCCGAGCTGCTCTCCACCAAGGACATTGTGGCGCGGGTCGACAAGCAGACCAAGGA
GGACGGGCGGTTCTTTGAGAAGCAGTTGGCGCAGATGGCCGAGCCGCACGAGCTGCCGTACCAGG
AGGTGCGGCTGAACACGGTGACCCGCGGGCACACCCAGCCGCGGGTGGAGCACCATGGAGAGACT
ACAAACATCTAATCTGTATTATGTACCTTATAGACTGGCGTCCGCGCCGAATGCACGTGCCGTTC
ACGGAAGAGGAGAGGGGGTGGGGTGGTAGTAGTGGGTGGTAGTAGTGGTGGAGGTGGTGGAGGTG
GTGGAGGTGGTTTGAGAGTAGTGGTGTAGTGGGGGGAAGTTAGCG
Right flanking sequence: Indices 100742 -- 101241
TGTGTAGTTGTGATGGTGAGGGTGTAGATGAGTTCATGAATAGCCAATATGGTTGGTGGTGGCTT
TTTTGTACAGTCTTTGAGTTTTGACTACGGGTTTGATTCTTATGGCTATCATTTCACTGACGCAT
TATGTCGCATTGATGCCTGTCTAATAAGTACTAAAACAACTCAAAACGGAACCGAGGAAGAATAC
GAAAATGAAATAAACGGGCATTGCCTACCCCCTTGAAACCATCTTAGCTCTATGCTGCACGCCCT
ACTACCCCCCATCACACCCTACTACATCCTACCATCTGTCTACAACTACTAAACAACACAAAACC
TAACCGAGGCAGAAAAGGAAAACGAAACGGGTATTACCTACCCACTTAAGCCATATTAGCTCCCT
GCTACACCCCTACTACACCTACCACCCCTACTACACCCCTATACCCCTTCTCTTACCGCACCCCT
CACCTAACCACCCTCAATACACGTGACGAAATTATCGATTCCATC
Found at i:100714 original size:17 final size:17
Alignment explanation
Indices: 100694--100731 Score: 60
Period size: 17 Copynumber: 2.2 Consensus size: 17
100684 GGAAGTTAGC
100694 GGTGGTGGTGAG-GTAGT
1 GGTGGT-GTGAGAGTAGT
100711 GGTGGTGTGAGAGTAGT
1 GGTGGTGTGAGAGTAGT
100728 GGTG
1 GGTG
100732 TGAGAGTAGT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
16 5 0.25
17 15 0.75
ACGTcount: A:0.13, C:0.00, G:0.58, T:0.29
Consensus pattern (17 bp):
GGTGGTGTGAGAGTAGT
Left flanking sequence: Indices 100194 -- 100693
AGGGGATCCACGTGCGCGGCGAGGGGTTCTTCCACGCCATCGAGGTGGTGAGCCAGATGATCGAG
CAGCACGAGGAGTTTTCCATCATTCCCGACGACTTGTTGCAGTTCTACGACCGGTGCGGCTTTGA
CCAGGCCAAGCCCGAGCTGCTCTCCACCAAGGACATTGTGGCGCGGGTCGACAAGCAGACCAAGG
AGGACGGGCGGTTCTTTGAGAAGCAGTTGGCGCAGATGGCCGAGCCGCACGAGCTGCCGTACCAG
GAGGTGCGGCTGAACACGGTGACCCGCGGGCACACCCAGCCGCGGGTGGAGCACCATGGAGAGAC
TACAAACATCTAATCTGTATTATGTACCTTATAGACTGGCGTCCGCGCCGAATGCACGTGCCGTT
CACGGAAGAGGAGAGGGGGTGGGGTGGTAGTAGTGGGTGGTAGTAGTGGTGGAGGTGGTGGAGGT
GGTGGAGGTGGTTTGAGAGTAGTGGTGTAGTGGGGGGAAGTTAGC
Right flanking sequence: Indices 100732 -- 101231
TGAGAGTAGTTGTGTAGTTGTGATGGTGAGGGTGTAGATGAGTTCATGAATAGCCAATATGGTTG
GTGGTGGCTTTTTTGTACAGTCTTTGAGTTTTGACTACGGGTTTGATTCTTATGGCTATCATTTC
ACTGACGCATTATGTCGCATTGATGCCTGTCTAATAAGTACTAAAACAACTCAAAACGGAACCGA
GGAAGAATACGAAAATGAAATAAACGGGCATTGCCTACCCCCTTGAAACCATCTTAGCTCTATGC
TGCACGCCCTACTACCCCCCATCACACCCTACTACATCCTACCATCTGTCTACAACTACTAAACA
ACACAAAACCTAACCGAGGCAGAAAAGGAAAACGAAACGGGTATTACCTACCCACTTAAGCCATA
TTAGCTCCCTGCTACACCCCTACTACACCTACCACCCCTACTACACCCCTATACCCCTTCTCTTA
CCGCACCCCTCACCTAACCACCCTCAATACACGTGACGAAATTAT
Found at i:100746 original size:14 final size:14
Alignment explanation
Indices: 100712--100746 Score: 61
Period size: 14 Copynumber: 2.5 Consensus size: 14
100702 TGAGGTAGTG
100712 GTGGTGTGAGAGTA
1 GTGGTGTGAGAGTA
100726 GTGGTGTGAGAGTA
1 GTGGTGTGAGAGTA
*
100740 GTTGTGT
1 GTGGTGT
100747 AGTTGTGATG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.17, C:0.00, G:0.49, T:0.34
Consensus pattern (14 bp):
GTGGTGTGAGAGTA
Left flanking sequence: Indices 100212 -- 100711
GCGAGGGGTTCTTCCACGCCATCGAGGTGGTGAGCCAGATGATCGAGCAGCACGAGGAGTTTTCC
ATCATTCCCGACGACTTGTTGCAGTTCTACGACCGGTGCGGCTTTGACCAGGCCAAGCCCGAGCT
GCTCTCCACCAAGGACATTGTGGCGCGGGTCGACAAGCAGACCAAGGAGGACGGGCGGTTCTTTG
AGAAGCAGTTGGCGCAGATGGCCGAGCCGCACGAGCTGCCGTACCAGGAGGTGCGGCTGAACACG
GTGACCCGCGGGCACACCCAGCCGCGGGTGGAGCACCATGGAGAGACTACAAACATCTAATCTGT
ATTATGTACCTTATAGACTGGCGTCCGCGCCGAATGCACGTGCCGTTCACGGAAGAGGAGAGGGG
GTGGGGTGGTAGTAGTGGGTGGTAGTAGTGGTGGAGGTGGTGGAGGTGGTGGAGGTGGTTTGAGA
GTAGTGGTGTAGTGGGGGGAAGTTAGCGGTGGTGGTGAGGTAGTG
Right flanking sequence: Indices 100747 -- 101246
AGTTGTGATGGTGAGGGTGTAGATGAGTTCATGAATAGCCAATATGGTTGGTGGTGGCTTTTTTG
TACAGTCTTTGAGTTTTGACTACGGGTTTGATTCTTATGGCTATCATTTCACTGACGCATTATGT
CGCATTGATGCCTGTCTAATAAGTACTAAAACAACTCAAAACGGAACCGAGGAAGAATACGAAAA
TGAAATAAACGGGCATTGCCTACCCCCTTGAAACCATCTTAGCTCTATGCTGCACGCCCTACTAC
CCCCCATCACACCCTACTACATCCTACCATCTGTCTACAACTACTAAACAACACAAAACCTAACC
GAGGCAGAAAAGGAAAACGAAACGGGTATTACCTACCCACTTAAGCCATATTAGCTCCCTGCTAC
ACCCCTACTACACCTACCACCCCTACTACACCCCTATACCCCTTCTCTTACCGCACCCCTCACCT
AACCACCCTCAATACACGTGACGAAATTATCGATTCCATCTCGAC
Found at i:101147 original size:11 final size:11
Alignment explanation
Indices: 101128--101172 Score: 53
Period size: 11 Copynumber: 4.5 Consensus size: 11
101118 CATATTAGCT
*
101128 CCCTGCTACAC
1 CCCTACTACAC
101139 CCCTACTACA-
1 CCCTACTACAC
101149 -CCTAC--CAC
1 CCCTACTACAC
101157 CCCTACTACAC
1 CCCTACTACAC
101168 CCCTA
1 CCCTA
101173 TACCCCTTCT
Statistics
Matches: 29, Mismatches: 1, Indels: 8
0.76 0.03 0.21
Matches are distributed among these distances:
7 2 0.07
9 10 0.34
11 17 0.59
ACGTcount: A:0.24, C:0.56, G:0.02, T:0.18
Consensus pattern (11 bp):
CCCTACTACAC
Left flanking sequence: Indices 100628 -- 101127
AGTGGTGGAGGTGGTGGAGGTGGTGGAGGTGGTTTGAGAGTAGTGGTGTAGTGGGGGGAAGTTAG
CGGTGGTGGTGAGGTAGTGGTGGTGTGAGAGTAGTGGTGTGAGAGTAGTTGTGTAGTTGTGATGG
TGAGGGTGTAGATGAGTTCATGAATAGCCAATATGGTTGGTGGTGGCTTTTTTGTACAGTCTTTG
AGTTTTGACTACGGGTTTGATTCTTATGGCTATCATTTCACTGACGCATTATGTCGCATTGATGC
CTGTCTAATAAGTACTAAAACAACTCAAAACGGAACCGAGGAAGAATACGAAAATGAAATAAACG
GGCATTGCCTACCCCCTTGAAACCATCTTAGCTCTATGCTGCACGCCCTACTACCCCCCATCACA
CCCTACTACATCCTACCATCTGTCTACAACTACTAAACAACACAAAACCTAACCGAGGCAGAAAA
GGAAAACGAAACGGGTATTACCTACCCACTTAAGCCATATTAGCT
Right flanking sequence: Indices 101173 -- 101672
TACCCCTTCTCTTACCGCACCCCTCACCTAACCACCCTCAATACACGTGACGAAATTATCGATTC
CATCTCGACACCATGCTGCTCACGGCGGATTCGTTCGAACAGATCATCAAAGAGCGGTTGCACGC
GGATTTGGTGCAGGTAGAGGACATGTCCGGCGGCTGTGGCCAGGCGTTTGCCGTGGTGATTGTCC
TGGACGACTTCAAGGGCAAAAACAAGTTGGCCCGCCACCGGATGGTCAACAGCGCGTTGAAGCAG
GAGATCGAGCTGATCCACGCGTTCACCCAGAAGGGGTACACCCGCGAGGAGTGGGAGAAGGAGGG
CGGGTCGCTTTAGGGAGGGTAAGTCTAGATATCGGGCCACGATATCGGGCCATGTGTATATAGGT
AATACTATGAGAAAGAGATGGTGGCCATATAGGTAATAATAAGAGAAAGAGATGCGTGGAGGGCT
ACGTAGATAATACTATGAGAACAGAGAGATGCGTGATGTTGAGGT
Found at i:101543 original size:13 final size:13
Alignment explanation
Indices: 101525--101549 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
101515 GGTAAGTCTA
101525 GATATCGGGCCAC
1 GATATCGGGCCAC
101538 GATATCGGGCCA
1 GATATCGGGCCA
101550 TGTGTATATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.28, G:0.32, T:0.16
Consensus pattern (13 bp):
GATATCGGGCCAC
Left flanking sequence: Indices 101025 -- 101524
ACATCCTACCATCTGTCTACAACTACTAAACAACACAAAACCTAACCGAGGCAGAAAAGGAAAAC
GAAACGGGTATTACCTACCCACTTAAGCCATATTAGCTCCCTGCTACACCCCTACTACACCTACC
ACCCCTACTACACCCCTATACCCCTTCTCTTACCGCACCCCTCACCTAACCACCCTCAATACACG
TGACGAAATTATCGATTCCATCTCGACACCATGCTGCTCACGGCGGATTCGTTCGAACAGATCAT
CAAAGAGCGGTTGCACGCGGATTTGGTGCAGGTAGAGGACATGTCCGGCGGCTGTGGCCAGGCGT
TTGCCGTGGTGATTGTCCTGGACGACTTCAAGGGCAAAAACAAGTTGGCCCGCCACCGGATGGTC
AACAGCGCGTTGAAGCAGGAGATCGAGCTGATCCACGCGTTCACCCAGAAGGGGTACACCCGCGA
GGAGTGGGAGAAGGAGGGCGGGTCGCTTTAGGGAGGGTAAGTCTA
Right flanking sequence: Indices 101550 -- 102049
TGTGTATATAGGTAATACTATGAGAAAGAGATGGTGGCCATATAGGTAATAATAAGAGAAAGAGA
TGCGTGGAGGGCTACGTAGATAATACTATGAGAACAGAGAGATGCGTGATGTTGAGGTTGAAAGT
GGCGTATATCGTTAGCCAGTGCATTTGCATGTTTTTGCTGTACCGAGTAGTTAGAGGAATGTGGT
AAGGAACACTAGGAGGAAAAGAAGACTGGGAACACACTGACTGGCTGAGGCAGAGGGAACTGGTC
GCTATGAGAGTGTGGTTGCCTTAGAGCAGGTGTCGCGGCTCTTGAGAGTCCGTGGTGATGAAGGT
GCCTTGATGGTGTCCGGTGGCATCAGAACTAGGGGGCTCGGAGGGATTGACTCGCTTTGCAAAGG
TTGGATCATCCGTTACCGACATACTTCGTCGCCAGTTTGCCCGACTCGACGCTGGCGACAATGTC
TACCCTGAATCTAGAGCCGTCAGACTTCAATTTTGATATGTATGT
Found at i:101598 original size:34 final size:35
Alignment explanation
Indices: 101555--101621 Score: 109
Period size: 34 Copynumber: 1.9 Consensus size: 35
101545 GGCCATGTGT
* *
101555 ATATAGGTAATACTATGAGAAAGAGATG-GTGGCC
1 ATATAGGTAATAATAAGAGAAAGAGATGCGTGGCC
101589 ATATAGGTAATAATAAGAGAAAGAGATGCGTGG
1 ATATAGGTAATAATAAGAGAAAGAGATGCGTGG
101622 AGGGCTACGT
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
34 26 0.87
35 4 0.13
ACGTcount: A:0.42, C:0.06, G:0.30, T:0.22
Consensus pattern (35 bp):
ATATAGGTAATAATAAGAGAAAGAGATGCGTGGCC
Left flanking sequence: Indices 101055 -- 101554
CAACACAAAACCTAACCGAGGCAGAAAAGGAAAACGAAACGGGTATTACCTACCCACTTAAGCCA
TATTAGCTCCCTGCTACACCCCTACTACACCTACCACCCCTACTACACCCCTATACCCCTTCTCT
TACCGCACCCCTCACCTAACCACCCTCAATACACGTGACGAAATTATCGATTCCATCTCGACACC
ATGCTGCTCACGGCGGATTCGTTCGAACAGATCATCAAAGAGCGGTTGCACGCGGATTTGGTGCA
GGTAGAGGACATGTCCGGCGGCTGTGGCCAGGCGTTTGCCGTGGTGATTGTCCTGGACGACTTCA
AGGGCAAAAACAAGTTGGCCCGCCACCGGATGGTCAACAGCGCGTTGAAGCAGGAGATCGAGCTG
ATCCACGCGTTCACCCAGAAGGGGTACACCCGCGAGGAGTGGGAGAAGGAGGGCGGGTCGCTTTA
GGGAGGGTAAGTCTAGATATCGGGCCACGATATCGGGCCATGTGT
Right flanking sequence: Indices 101622 -- 102121
AGGGCTACGTAGATAATACTATGAGAACAGAGAGATGCGTGATGTTGAGGTTGAAAGTGGCGTAT
ATCGTTAGCCAGTGCATTTGCATGTTTTTGCTGTACCGAGTAGTTAGAGGAATGTGGTAAGGAAC
ACTAGGAGGAAAAGAAGACTGGGAACACACTGACTGGCTGAGGCAGAGGGAACTGGTCGCTATGA
GAGTGTGGTTGCCTTAGAGCAGGTGTCGCGGCTCTTGAGAGTCCGTGGTGATGAAGGTGCCTTGA
TGGTGTCCGGTGGCATCAGAACTAGGGGGCTCGGAGGGATTGACTCGCTTTGCAAAGGTTGGATC
ATCCGTTACCGACATACTTCGTCGCCAGTTTGCCCGACTCGACGCTGGCGACAATGTCTACCCTG
AATCTAGAGCCGTCAGACTTCAATTTTGATATGTATGTGGTCAACACGTCGGGACCCGTGTTCAC
AATCACCCACCAGAATTAGTAGAGACAGTCCCATCTTCTGGGGTG
Found at i:104332 original size:14 final size:14
Alignment explanation
Indices: 104313--104353 Score: 82
Period size: 14 Copynumber: 2.9 Consensus size: 14
104303 TACTATGAAT
104313 AGTTTTGAGAAGCG
1 AGTTTTGAGAAGCG
104327 AGTTTTGAGAAGCG
1 AGTTTTGAGAAGCG
104341 AGTTTTGAGAAGC
1 AGTTTTGAGAAGC
104354 TCTGAGTGGT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 27 1.00
ACGTcount: A:0.29, C:0.07, G:0.34, T:0.29
Consensus pattern (14 bp):
AGTTTTGAGAAGCG
Left flanking sequence: Indices 103813 -- 104312
GAGATGACAAAGTAGGCGAAGCACAAGCACGACACCCCACCGGTGGCCACCCCACGGACTCCGGT
GTATTTGTGGGTCACTTCGTTGACAGCGGCCATGAGAAAGTACCCCGACATCACCACCACGTAGG
TGATACTCATCGTGAAGTCGTTGAGGTGGTAGTGGGCCTCGAGCTTCGGGATGATGGTGCCCAAA
GTCTGCTCCGCGAGGCCAAAAAGGGTGAAAAGCATGAAGCAACCAAAGATCTGGACCTTGAGCCG
TGTCGACTGGCGCCAGTCCGTGGCGTCGATCACCACCTCTGTTCCCTGGTACTCGACTACCTTCA
TTAGTGGCTGATGGACGAAAACGGAAATTCATCCTGAGCGTATGCAGGCGGCTGCAGGAATCTGG
GGAACCGTTGGGACGACAATAAGAAAAGAATGGGGTTCCAAACGATGAGAACAATGTGAGTTGAT
GCTTTCACCCGTTGAATGGTTGTATTTAACCTACTTACTATGAAT
Right flanking sequence: Indices 104354 -- 104853
TCTGAGTGGTACCATTGTCCCTACATAGGGTAATATTGTCCATCCTGGGCTGACTTCGCTGGTTT
TTATGGTCTTATATACATGGGAAGTAGCTCCTGGTGCCTCCTGTTTTGTCCTTGGTCGTCTCTTT
CCTCTCAGTGCGCTGAACTCGTCTCAAGCAGAGAATTGGGTCTGGGCTCGTTTAAACTCGAGCCT
ACTCAAAATAGACTCAAACCCCCGTATCTCTCACACACTCTTCCCCTCACGAGTTGGCGCGGTCG
AGCAACCCCTCAAACACCCGCGTGAGCTCGATGTCCAACACCTGGCGCAACGGCACATACGTCTC
GTCGCGCAAATTCTCCAACCGCTCCACCAACGGCCCGATCTGGTTGGCTATAACCACCCGGACCC
GGTTGATCAACGGCACAAGCCGCACCATCTCGGTGCGCGAGATCTTCTGCGTCGATCTGGGCCCC
TGGTACCCGTCCACGAGCACCAGGAGCTTGACGTCCAAACTCTGG
Found at i:105504 original size:16 final size:18
Alignment explanation
Indices: 105483--105537 Score: 55
Period size: 16 Copynumber: 3.2 Consensus size: 18
105473 GCAAAGGACG
*
105483 GGAGAAGGA-CGGAGA-T
1 GGAGAAGGAGCGGAGAGA
105499 GGAGAA-GAGCGGAGAGA
1 GGAGAAGGAGCGGAGAGA
*
105516 GGAGAAGG-GCAGAGAGGA
1 GGAGAAGGAGCGGAGA-GA
105534 GGAG
1 GGAG
105538 CAGGGTAGAG
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
15 2 0.06
16 12 0.36
17 12 0.36
18 7 0.21
ACGTcount: A:0.38, C:0.05, G:0.55, T:0.02
Consensus pattern (18 bp):
GGAGAAGGAGCGGAGAGA
Left flanking sequence: Indices 104983 -- 105482
TAGTCTTGCTGGCCAAAAAGCCGGTTGCGGGTGATCACTGTGCGCCAGAGCTCGTCAATGACCAC
GGCCAAGTCGTCAAACAACTCAAACAACAGGCACGGTACCTCGCCCGCCTGCGATTTGATGAATC
TCCGCTGGACGGCGAGCATTTTGTTGTCGATGTCCATCACCAACTGGGAAATCTGGCCATCACGG
AGCAATTGGGGTGCGTCGGTGAACTCCAGCTTCGCCCGGTCAATCTCTATGTCCACCAGATTGGT
GAAAGTGTCGATTTGTGGCAATTGGTCGCGGGTTTGGGGGGGTTCCTCGGTGTCGCTCATCTCGT
AGAGGTCTGGGTTGAGATCCAAGTCGTTCTCGACGTCGTCGGGGATCTCGGGCACCTCTGCGGTG
GGGGCCAGGTGGATTGGCGTCGCAGGCGTGCTCATGGGTTTGCGGTGGTCTGGGCCTGACTGTGG
GGTGTTTTCGCAGGCGAAAACAGGGGTTTGGTGGAGCAAAGGACG
Right flanking sequence: Indices 105538 -- 106037
CAGGGTAGAGGCGTGGTGGTGGGTTCTTGAGGTTGTAGTGTTGGTAATTAGGGTACTGTGTGTAT
TTCAGGGTGAACTTGTGTTCGGACTCGTGAGTTAATGGGTGTTTATACGCCATGGGAATCCGGTG
GTCCTGTGTGGAGCACGCCAAGAACGGGCAAACTTGGTAAGAGGGCAATTGAAAGAAGTGAGAGA
AGAGGTGGAGTCTCAATTGGGTTTTGGAACTGCGTGTGAGCAACCAGTGGGTTCGTGTAGGGTTT
GTTTACGCTCGGAGGTTGGTTCTCGTGGAATTGAGACGGTCATGTTAGATGTGGATTGATGTGGA
TAGTTGAAGTATCGTCATAGAATAGACCCATTCTAGACTGGTCTCGAGTTCAGACCCTCCCCCAT
GATCTTCTCCAAGCCTCGCTCGTGACCCCAGCACGACCGGTTTCGGACTCAGGGGTAGGTCACGA
GACCTCTAAAACCACCCACAGAACCAGGGACTCGTTTACCATGTG
Found at i:105521 original size:17 final size:17
Alignment explanation
Indices: 105494--105537 Score: 52
Period size: 17 Copynumber: 2.5 Consensus size: 17
105484 GAGAAGGACG
*
105494 GAGATGGAGAAGAGCGGA
1 GAGA-GGAGAAGAGCAGA
*
105512 GAGAGGAGAAGGGCAGA
1 GAGAGGAGAAGAGCAGA
105529 GAGGAGGAG
1 GA-GAGGAG
105538 CAGGGTAGAG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 13 0.57
18 10 0.43
ACGTcount: A:0.39, C:0.05, G:0.55, T:0.02
Consensus pattern (17 bp):
GAGAGGAGAAGAGCAGA
Left flanking sequence: Indices 104994 -- 105493
GCCAAAAAGCCGGTTGCGGGTGATCACTGTGCGCCAGAGCTCGTCAATGACCACGGCCAAGTCGT
CAAACAACTCAAACAACAGGCACGGTACCTCGCCCGCCTGCGATTTGATGAATCTCCGCTGGACG
GCGAGCATTTTGTTGTCGATGTCCATCACCAACTGGGAAATCTGGCCATCACGGAGCAATTGGGG
TGCGTCGGTGAACTCCAGCTTCGCCCGGTCAATCTCTATGTCCACCAGATTGGTGAAAGTGTCGA
TTTGTGGCAATTGGTCGCGGGTTTGGGGGGGTTCCTCGGTGTCGCTCATCTCGTAGAGGTCTGGG
TTGAGATCCAAGTCGTTCTCGACGTCGTCGGGGATCTCGGGCACCTCTGCGGTGGGGGCCAGGTG
GATTGGCGTCGCAGGCGTGCTCATGGGTTTGCGGTGGTCTGGGCCTGACTGTGGGGTGTTTTCGC
AGGCGAAAACAGGGGTTTGGTGGAGCAAAGGACGGGAGAAGGACG
Right flanking sequence: Indices 105538 -- 106037
CAGGGTAGAGGCGTGGTGGTGGGTTCTTGAGGTTGTAGTGTTGGTAATTAGGGTACTGTGTGTAT
TTCAGGGTGAACTTGTGTTCGGACTCGTGAGTTAATGGGTGTTTATACGCCATGGGAATCCGGTG
GTCCTGTGTGGAGCACGCCAAGAACGGGCAAACTTGGTAAGAGGGCAATTGAAAGAAGTGAGAGA
AGAGGTGGAGTCTCAATTGGGTTTTGGAACTGCGTGTGAGCAACCAGTGGGTTCGTGTAGGGTTT
GTTTACGCTCGGAGGTTGGTTCTCGTGGAATTGAGACGGTCATGTTAGATGTGGATTGATGTGGA
TAGTTGAAGTATCGTCATAGAATAGACCCATTCTAGACTGGTCTCGAGTTCAGACCCTCCCCCAT
GATCTTCTCCAAGCCTCGCTCGTGACCCCAGCACGACCGGTTTCGGACTCAGGGGTAGGTCACGA
GACCTCTAAAACCACCCACAGAACCAGGGACTCGTTTACCATGTG
Found at i:105537 original size:18 final size:17
Alignment explanation
Indices: 105494--105547 Score: 54
Period size: 18 Copynumber: 3.1 Consensus size: 17
105484 GAGAAGGACG
* *
105494 GAGATGGAGAAGAGCGGA
1 GAGA-GGAGAAGGGCAGA
105512 GAGAGGAGAAGGGCAGA
1 GAGAGGAGAAGGGCAGA
* *
105529 GAGGAGGAGCAGGGTAGA
1 GA-GAGGAGAAGGGCAGA
105547 G
1 G
105548 GCGTGGTGGT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
17 13 0.42
18 18 0.58
ACGTcount: A:0.37, C:0.06, G:0.54, T:0.04
Consensus pattern (17 bp):
GAGAGGAGAAGGGCAGA
Left flanking sequence: Indices 104994 -- 105493
GCCAAAAAGCCGGTTGCGGGTGATCACTGTGCGCCAGAGCTCGTCAATGACCACGGCCAAGTCGT
CAAACAACTCAAACAACAGGCACGGTACCTCGCCCGCCTGCGATTTGATGAATCTCCGCTGGACG
GCGAGCATTTTGTTGTCGATGTCCATCACCAACTGGGAAATCTGGCCATCACGGAGCAATTGGGG
TGCGTCGGTGAACTCCAGCTTCGCCCGGTCAATCTCTATGTCCACCAGATTGGTGAAAGTGTCGA
TTTGTGGCAATTGGTCGCGGGTTTGGGGGGGTTCCTCGGTGTCGCTCATCTCGTAGAGGTCTGGG
TTGAGATCCAAGTCGTTCTCGACGTCGTCGGGGATCTCGGGCACCTCTGCGGTGGGGGCCAGGTG
GATTGGCGTCGCAGGCGTGCTCATGGGTTTGCGGTGGTCTGGGCCTGACTGTGGGGTGTTTTCGC
AGGCGAAAACAGGGGTTTGGTGGAGCAAAGGACGGGAGAAGGACG
Right flanking sequence: Indices 105548 -- 106047
GCGTGGTGGTGGGTTCTTGAGGTTGTAGTGTTGGTAATTAGGGTACTGTGTGTATTTCAGGGTGA
ACTTGTGTTCGGACTCGTGAGTTAATGGGTGTTTATACGCCATGGGAATCCGGTGGTCCTGTGTG
GAGCACGCCAAGAACGGGCAAACTTGGTAAGAGGGCAATTGAAAGAAGTGAGAGAAGAGGTGGAG
TCTCAATTGGGTTTTGGAACTGCGTGTGAGCAACCAGTGGGTTCGTGTAGGGTTTGTTTACGCTC
GGAGGTTGGTTCTCGTGGAATTGAGACGGTCATGTTAGATGTGGATTGATGTGGATAGTTGAAGT
ATCGTCATAGAATAGACCCATTCTAGACTGGTCTCGAGTTCAGACCCTCCCCCATGATCTTCTCC
AAGCCTCGCTCGTGACCCCAGCACGACCGGTTTCGGACTCAGGGGTAGGTCACGAGACCTCTAAA
ACCACCCACAGAACCAGGGACTCGTTTACCATGTGATAATCAAGC
Found at i:106704 original size:10 final size:11
Alignment explanation
Indices: 106674--106714 Score: 59
Period size: 11 Copynumber: 3.8 Consensus size: 11
106664 ACCTACTCGT
106674 TCTCCACCCAC
1 TCTCCACCCAC
106685 TCTCCACCCAC
1 TCTCCACCCAC
106696 TCT-CACCCAC
1 TCTCCACCCAC
106706 -CGTCCACCC
1 TC-TCCACCC
106715 TCCTACACCC
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
9 1 0.04
10 8 0.29
11 19 0.68
ACGTcount: A:0.17, C:0.63, G:0.02, T:0.17
Consensus pattern (11 bp):
TCTCCACCCAC
Left flanking sequence: Indices 106174 -- 106673
CTCCTAGATCTAAGAAATAACTCCAGCGGAGAACTCTACGAATCCACCCAAACAATACCCACCCT
TCCTCCCGGCCCTTCCCCTCTCTTCCCTGCATTGCGTTGATGCACAGAACACATTGGCGACGGAG
CGATCGGGGTTGGACGGGGAAATCTCCGAGTAGCACGCGACAGGCAACAATAGGACGCACTGCTG
CGTTGCGGTATCGGTGGTGTCTACGTTGCTAGGCTCCTTAGTCATGTTCCGTAAGATCCATGTGG
GGTGATCCGACGGGTCATACTGGCCCCACCAGCCCGTGTCCACTACCCGGCACCAGCCACACTTC
CACCACCACCACCCTACCCGTAACAGACCCACTACCCCAGATAATCTCGTAGTTGCTCCAGCACG
GCTACCCCACCACACGACTACCCGGAGCAAACCGACCAGACCAACTCGATAACCAACCCCAAGTA
GCCACCATCCCCACACCAACCCCTCAACACTGGCCACCTACTCGT
Right flanking sequence: Indices 106715 -- 107214
TCCTACACCCTCCTACACCCACCCTACTTCTTCCACTCCCTACCTGCTTTCTTTTCTTATCGGCG
TGCATACTACTGCTGCAGAATCATTGCTCACATGGTATAAAGCACCCTCACTTTCAGCCACCCTC
CACGCCCCGATGCCCGTGTCCGCGACCTTTGAGCCGCGGCAGGCACCGACCAAGCCGTCAGCAGA
GTCCGCTGAAGACGCCCGCAGGCGCAAACTCGGGCTTACTACCCCACGATCACCGACTCCAGGCC
GTCACAGCCCCGATCTCGCTCCCCACAAGAGCTCTGACGATGTGAGCGCCACACCCACCCCGGTA
GCTGACCCAGCAGAGGGGTTCAAGCAGACCGGAGACTACTTTGCCCACGTCAGTGCCCCCTCGTC
GGCGCTGGACCTGTGGGGGCGCTACCTTCTGCCTCAGGCGAAATACATAGGCAACCAGCGGCTGG
GAACCAGTCTGTACAACGTGTTTGTCGAGTTCAAAACGGTGGACC
Found at i:106723 original size:10 final size:10
Alignment explanation
Indices: 106710--106734 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
106700 ACCCACCGTC
106710 CACCCTCCTA
1 CACCCTCCTA
106720 CACCCTCCTA
1 CACCCTCCTA
106730 CACCC
1 CACCC
106735 ACCCTACTTC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.20, C:0.64, G:0.00, T:0.16
Consensus pattern (10 bp):
CACCCTCCTA
Left flanking sequence: Indices 106210 -- 106709
TACGAATCCACCCAAACAATACCCACCCTTCCTCCCGGCCCTTCCCCTCTCTTCCCTGCATTGCG
TTGATGCACAGAACACATTGGCGACGGAGCGATCGGGGTTGGACGGGGAAATCTCCGAGTAGCAC
GCGACAGGCAACAATAGGACGCACTGCTGCGTTGCGGTATCGGTGGTGTCTACGTTGCTAGGCTC
CTTAGTCATGTTCCGTAAGATCCATGTGGGGTGATCCGACGGGTCATACTGGCCCCACCAGCCCG
TGTCCACTACCCGGCACCAGCCACACTTCCACCACCACCACCCTACCCGTAACAGACCCACTACC
CCAGATAATCTCGTAGTTGCTCCAGCACGGCTACCCCACCACACGACTACCCGGAGCAAACCGAC
CAGACCAACTCGATAACCAACCCCAAGTAGCCACCATCCCCACACCAACCCCTCAACACTGGCCA
CCTACTCGTTCTCCACCCACTCTCCACCCACTCTCACCCACCGTC
Right flanking sequence: Indices 106735 -- 107234
ACCCTACTTCTTCCACTCCCTACCTGCTTTCTTTTCTTATCGGCGTGCATACTACTGCTGCAGAA
TCATTGCTCACATGGTATAAAGCACCCTCACTTTCAGCCACCCTCCACGCCCCGATGCCCGTGTC
CGCGACCTTTGAGCCGCGGCAGGCACCGACCAAGCCGTCAGCAGAGTCCGCTGAAGACGCCCGCA
GGCGCAAACTCGGGCTTACTACCCCACGATCACCGACTCCAGGCCGTCACAGCCCCGATCTCGCT
CCCCACAAGAGCTCTGACGATGTGAGCGCCACACCCACCCCGGTAGCTGACCCAGCAGAGGGGTT
CAAGCAGACCGGAGACTACTTTGCCCACGTCAGTGCCCCCTCGTCGGCGCTGGACCTGTGGGGGC
GCTACCTTCTGCCTCAGGCGAAATACATAGGCAACCAGCGGCTGGGAACCAGTCTGTACAACGTG
TTTGTCGAGTTCAAAACGGTGGACCTAGCCAACTCGTGTGTCACG
Found at i:108839 original size:12 final size:12
Alignment explanation
Indices: 108822--108846 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
108812 GTTGAGCTGA
108822 AATGACCAAATT
1 AATGACCAAATT
108834 AATGACCAAATT
1 AATGACCAAATT
108846 A
1 A
108847 GTGTTACTTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.52, C:0.16, G:0.08, T:0.24
Consensus pattern (12 bp):
AATGACCAAATT
Left flanking sequence: Indices 108322 -- 108821
GTAACCTGTTTGGGCTTGCAGTTCACTGCTCCCAGCTGGTGCCATGGACTTTGCCCAGCGACCTC
TGTGAAGCTATCACCCTACTTGTTGAGCATTACCTTGTGCCCAACCTTGCAGACTTCGTGTATTT
CGTGAAGACGCAAACCCGGAGCCCCTATGATCATCGTGTGACTCAGCACACTCAGCAGTTCTACC
GTGGGTTGGAGTTGACCAACCGCTGGTCGCGGTACAGCAACACCGAGCTTGTGTTGGCGACTTCT
CTTGTTCGGCTTCTGGAGGATCAAATTGGGGAGCTTCGCAAGCACTTTAGGGGCCAAAGTCCGTC
CTACCGCGAGCTCGAAAGCTGGCTGCGCCGGTTCGATGATTTTTCTCGCCCCGAGTAACTATTTA
GGTAATTTCAAAGTAGTAGACTGGACGATACGGGCGAAGAAATGCCCTTTCGGTGGGTTTGGTCT
GGGTTGGTCTGGGTGAATGCGGGTCGCTGATGGTAGTTGAGCTGA
Right flanking sequence: Indices 108847 -- 109346
GTGTTACTTGCAATGCCGACTAGTGTTTTTGAACCCTGAGCCCACTTTTCAGCCCGCTGGTTCCG
TTCTTTACCCGTTGGTTCGGTCTCCCTTCGTATCCTGTATGCACGCACCCATAAAGAATAACTCC
TATAATACCTCCCTCCACCACAATTACCCACTGGCTCTCCTCCCAGCGGCCTTCAGAACCCCTCC
TAGCTAGTTTTTCTACCCTCACCCCCGCTGTTCCCCCACACGTTGGGACCATCTTTCCTCGACCT
TCGTGACCTGCATACAGCAAACCCATACCCTACACTCTGATAAATTGTTCTACTATTTGATATGT
ACAGCGATGGTTGGACCAGCCAAGCATGTTGAATACTGTGGAGTGCACATTGTTTGTTGAAAAGG
TAGGACACTCTTACTGGGCCTTCTTCGCCTCGCGCTCCGCCTTGAGAGCGTAGATCTTGGCGGTG
AACGGCTCCTCGAACGCCAACGCGACCCGGTACATCACAAACACG
Found at i:110193 original size:12 final size:11
Alignment explanation
Indices: 110163--110197 Score: 52
Period size: 11 Copynumber: 3.1 Consensus size: 11
110153 GTGGTACGAC
*
110163 AAAGTAGGCAG
1 AAAGTAGGCAA
110174 AAAGTAGGCAA
1 AAAGTAGGCAA
110185 AATAGTAGGCAA
1 AA-AGTAGGCAA
110197 A
1 A
110198 GAAAAATAGG
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
11 12 0.55
12 10 0.45
ACGTcount: A:0.51, C:0.09, G:0.29, T:0.11
Consensus pattern (11 bp):
AAAGTAGGCAA
Left flanking sequence: Indices 109663 -- 110162
CCAAGGTGAAGATGGTGAACGCCAAAAAGTAGCACCCGTACTTGGCGCGCTGGAAAATCTTGGTC
AAGATGTGGGTGTTGTACTCCATCCGAGCCACGATGTTCCAGTAGACGGGGTTGAAGGTGATGCA
CGCGACGGCGAACTGGAGCTCGGGGGTCCAGTCGACGAATTGCGCCCAGTGGGTGAACAAGTACT
GGGTGTCCTTGACGAAATCAATTGCTTTGTCCATGGCTACTACTGTTCTGGAGTCGTTGCGAATT
TTTCGCAACTACCCGGGGGAACGAGGCATGTGATACTGCATGGGGGATCGGGTGGGGGATCGTCG
GACGGTGGTGGCAAGCGAACAGGGGCGAGTTTGGGGTGGCACGGGCGAATTGGGTGGTGGGCGGA
TGGGGAGGGGTGTGCTGGTGGGCCATTGAGGCGCGGTGGCGGCTGCAACGGGAGAGAACCCGTGG
GTACCGCGCATGACGCGGTACAATGTTGGGTGGCGGTGGTACGAC
Right flanking sequence: Indices 110198 -- 110697
GAAAAATAGGAAGAAAAGTAGACAGAGAAAAGTAGAGAAAGTAAGCAGAAAAGCAGATAAAACAA
AAGATAAGCAGAGATGATAAATGTTCGTAATGGTAGCTGGGACAACGTTCGTTGACAGAGTCCCT
TGCCTTGTTACCCGCCTAGATCCTTCCCCACACCGCTTTGTGTCGTGTCTAAGGTTGCCTTAGCC
GGACGCGTCGCGATCACTCAATCCATCAGCACTCACCACTTCCCCTACTCTAACTACCGAACAAT
CGCCGACTGGTGCCACCCATCTCAACGCTACGTAACCCTACTCTGACATCACATGTCTTCCCGCC
TTGACGCGTAGACCCTGTTCTATTTTCAGCCTTGCCTGGCATATTTTCAAAGGTACACGTGGAAA
CCAACACTACCCACAACACTCACCACGCCCACGTCGCCCACCGCTCACAACACCCACACAACATC
CTCCACCACCCACCAACACACCCACCAACACACCCACGTAGCCCT
Found at i:110676 original size:12 final size:12
Alignment explanation
Indices: 110659--110689 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
110649 CATCCTCCAC
110659 CACCCACCAACA
1 CACCCACCAACA
110671 CACCCACCAACA
1 CACCCACCAACA
110683 CACCCAC
1 CACCCAC
110690 GTAGCCCTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.39, C:0.61, G:0.00, T:0.00
Consensus pattern (12 bp):
CACCCACCAACA
Left flanking sequence: Indices 110159 -- 110658
CGACAAAGTAGGCAGAAAGTAGGCAAAATAGTAGGCAAAGAAAAATAGGAAGAAAAGTAGACAGA
GAAAAGTAGAGAAAGTAAGCAGAAAAGCAGATAAAACAAAAGATAAGCAGAGATGATAAATGTTC
GTAATGGTAGCTGGGACAACGTTCGTTGACAGAGTCCCTTGCCTTGTTACCCGCCTAGATCCTTC
CCCACACCGCTTTGTGTCGTGTCTAAGGTTGCCTTAGCCGGACGCGTCGCGATCACTCAATCCAT
CAGCACTCACCACTTCCCCTACTCTAACTACCGAACAATCGCCGACTGGTGCCACCCATCTCAAC
GCTACGTAACCCTACTCTGACATCACATGTCTTCCCGCCTTGACGCGTAGACCCTGTTCTATTTT
CAGCCTTGCCTGGCATATTTTCAAAGGTACACGTGGAAACCAACACTACCCACAACACTCACCAC
GCCCACGTCGCCCACCGCTCACAACACCCACACAACATCCTCCAC
Right flanking sequence: Indices 110690 -- 111189
GTAGCCCTTAAACCCCTCCCATCGCCTTATCTCGTTAAGCCCCATCGTCCTACACATAAATGGCT
GCAAAATAGACTCGCTTTTACACCGCGCAACCCCACCACGTCTGGACATGGATGGAGATCCCCGC
GGACTCTTTTACGGCTGACCGGCTCACGTATGCCACTCCCGAGATCCTCGCCCACGCCCTGACCG
CGGTGCTTCTTGGTGGAGTGCCCGCACGGTGGTACAAGCGCCATATCCCCCCGGTGTCTGAGGCC
CGGCCCGAGCCACGGACCCATGTGAGGACGCCCGACAGCGAGATCGCTGCGGAGATTGAGGACGA
GCTCGTGCTGCTTGAGCTGCTGCTCTACGACTACACGAGCATGACGATGGAGACGCTGCTGACCC
GCTCGGCGCCCGGGTCGCTTCGGTTCGGGAGCGCGAGCTCGTTGGTGCCCAAGGTGACGGTGACC
GGGGACGAGGGGCCACTGGGGACGGGTCTGGTCCTACCGGTGGTG
Found at i:111355 original size:12 final size:12
Alignment explanation
Indices: 111340--111382 Score: 61
Period size: 12 Copynumber: 3.6 Consensus size: 12
111330 AAACTCAACG
111340 AGAGACATAAAC
1 AGAGACATAAAC
*
111352 AGAGACTTAAAC
1 AGAGACATAAAC
111364 AGAGAC-TCAAAC
1 AGAGACAT-AAAC
111376 AGAGACA
1 AGAGACA
111383 ACAGAGACTC
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
11 1 0.04
12 27 0.96
ACGTcount: A:0.53, C:0.19, G:0.19, T:0.09
Consensus pattern (12 bp):
AGAGACATAAAC
Left flanking sequence: Indices 110840 -- 111339
GGCTCACGTATGCCACTCCCGAGATCCTCGCCCACGCCCTGACCGCGGTGCTTCTTGGTGGAGTG
CCCGCACGGTGGTACAAGCGCCATATCCCCCCGGTGTCTGAGGCCCGGCCCGAGCCACGGACCCA
TGTGAGGACGCCCGACAGCGAGATCGCTGCGGAGATTGAGGACGAGCTCGTGCTGCTTGAGCTGC
TGCTCTACGACTACACGAGCATGACGATGGAGACGCTGCTGACCCGCTCGGCGCCCGGGTCGCTT
CGGTTCGGGAGCGCGAGCTCGTTGGTGCCCAAGGTGACGGTGACCGGGGACGAGGGGCCACTGGG
GACGGGTCTGGTCCTACCGGTGGTGCCTGAGAACCCCCAAGCCGAGGAAAAGGCGAGAAAGGTGG
AAAAGTCGGACAACTCTCGGAACTCGGTTGAATCAAGAAAGGAGGATAAGTCTCGGAACTCTGTT
GAGTTAAAGAGAAAGGAGTCATTAGACTCGAAGAGAAACTCAACG
Right flanking sequence: Indices 111383 -- 111882
ACAGAGACTCAACGAGCTCACTACAAATCAACCAGGGTATACTCGAGCACCACACAGACCACCAC
GACAACCTTCTCGAGCCCACGCTCTCCAACGGGACCCTGCGCTCCCAGGTGTCGCGCTACACCCT
GGCGGACCAGAGCTCATTAGCACCGCTGTTTGCCACCGCCCAGCCCCTGTTCACCCGGGCCCTGT
CACGCAAAGTGCGCTTTGGCGGCCCCTCCACCACCCACACCCAGCCAGCGATCCGCGCAGTGCAG
CCCGCCCCGACCCAGTCGTTTGACGCTTCCCAAAAGGTCAAACGGGACAAGGACCCGGGCCGCGG
CCACCAGTACGCCAGCTACGCCAAGCGCCAGGTCAAGGGCGCGTCCAAGGGCGTGGCCAAGCAGT
TCGACGTGCGCCGGTACGTCACCCGGATGATCTCCACCAGGTCCAACGGCGAGTTGCTCCGCGTG
GAGCGGATGCTCGTGCTCACGAAGGAGTTCCACGGGTGCTACCCG
Found at i:111387 original size:21 final size:21
Alignment explanation
Indices: 111335--111394 Score: 68
Period size: 24 Copynumber: 2.7 Consensus size: 21
111325 AAGAGAAACT
111335 CAACGAGAGACAT-AAACAGAGA
1 CAAC-AGAGAC-TCAAACAGAGA
111357 CTTAAACAGAGACTCAAACAGAGA
1 C---AACAGAGACTCAAACAGAGA
111381 CAACAGAGACTCAA
1 CAACAGAGACTCAA
111395 CGAGCTCACT
Statistics
Matches: 34, Mismatches: 0, Indels: 9
0.79 0.00 0.21
Matches are distributed among these distances:
21 13 0.38
22 1 0.03
23 1 0.03
24 16 0.47
25 3 0.09
ACGTcount: A:0.52, C:0.22, G:0.18, T:0.08
Consensus pattern (21 bp):
CAACAGAGACTCAAACAGAGA
Left flanking sequence: Indices 110835 -- 111334
TGACCGGCTCACGTATGCCACTCCCGAGATCCTCGCCCACGCCCTGACCGCGGTGCTTCTTGGTG
GAGTGCCCGCACGGTGGTACAAGCGCCATATCCCCCCGGTGTCTGAGGCCCGGCCCGAGCCACGG
ACCCATGTGAGGACGCCCGACAGCGAGATCGCTGCGGAGATTGAGGACGAGCTCGTGCTGCTTGA
GCTGCTGCTCTACGACTACACGAGCATGACGATGGAGACGCTGCTGACCCGCTCGGCGCCCGGGT
CGCTTCGGTTCGGGAGCGCGAGCTCGTTGGTGCCCAAGGTGACGGTGACCGGGGACGAGGGGCCA
CTGGGGACGGGTCTGGTCCTACCGGTGGTGCCTGAGAACCCCCAAGCCGAGGAAAAGGCGAGAAA
GGTGGAAAAGTCGGACAACTCTCGGAACTCGGTTGAATCAAGAAAGGAGGATAAGTCTCGGAACT
CTGTTGAGTTAAAGAGAAAGGAGTCATTAGACTCGAAGAGAAACT
Right flanking sequence: Indices 111395 -- 111894
CGAGCTCACTACAAATCAACCAGGGTATACTCGAGCACCACACAGACCACCACGACAACCTTCTC
GAGCCCACGCTCTCCAACGGGACCCTGCGCTCCCAGGTGTCGCGCTACACCCTGGCGGACCAGAG
CTCATTAGCACCGCTGTTTGCCACCGCCCAGCCCCTGTTCACCCGGGCCCTGTCACGCAAAGTGC
GCTTTGGCGGCCCCTCCACCACCCACACCCAGCCAGCGATCCGCGCAGTGCAGCCCGCCCCGACC
CAGTCGTTTGACGCTTCCCAAAAGGTCAAACGGGACAAGGACCCGGGCCGCGGCCACCAGTACGC
CAGCTACGCCAAGCGCCAGGTCAAGGGCGCGTCCAAGGGCGTGGCCAAGCAGTTCGACGTGCGCC
GGTACGTCACCCGGATGATCTCCACCAGGTCCAACGGCGAGTTGCTCCGCGTGGAGCGGATGCTC
GTGCTCACGAAGGAGTTCCACGGGTGCTACCCGGGCTTCTGCGAG
Found at i:113821 original size:15 final size:15
Alignment explanation
Indices: 113801--113832 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
113791 AGTGAAACGT
113801 GAGTGAAACTTGATA
1 GAGTGAAACTTGATA
113816 GAGTGAAACTTGATA
1 GAGTGAAACTTGATA
113831 GA
1 GA
113833 CTGATAGATA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.41, C:0.06, G:0.28, T:0.25
Consensus pattern (15 bp):
GAGTGAAACTTGATA
Left flanking sequence: Indices 113301 -- 113800
GCACAAGTACTGCGTGGTGCTTGTGCCTGGGTACTTGGTTATCTACAAGTTCCGGGCCCGGCGGT
TGAACGGGACCGTGCGGCCCACCACCCACCACGAGAAGGTGCTTTCTGTGCCGTTGAACCGGTGC
TACCTCTACCTGGGCGCGCTGACGGTGCCCGACTTGCTCGACCGCAACACCGAGTACCACGCCCT
GCCCGGGGACGCGCTGTTGCCGCGGCTCTACCCGCGTGACGGCTGGCGGTCGCTGGAGGAGGAGT
ACAACCGGTGCTTTACGCTCTGGTTGGGTCCCAAACGCCGGATCCGCACCGACCACTTGGCGGAC
AACGACGTGTTGAACCCGGGGTTTGCTACGTTGGTGCGGCGGCTCGGGGTCACCGGGAAGTCGCT
CGTGTTCATGGCCCGCAGTCGCCAGGAGCGGGAGTTGTGGACACGGGATATTCTTGCAGAGATTG
ACCGGGCCACGCTCGGAGTGAAGACTTAAAACAAGAGTGAAACGT
Right flanking sequence: Indices 113833 -- 114332
CTGATAGATAATAACTAATACGTAATGCGATACTGGTGCTATGTAGTGTGGAGATGGTTTGTTGG
TAGGTTTAAGTTGAATAAGTAAATACCAAATATAGGGGAAGGCAATTGTGGAGGTAGTGGGGTAG
TAGTGGGGTAGTTGTAGTGGTAGTAGTGGTGGTAGTAGTGGTGGTAGTGGTGGTAGTAGCGGTGG
CAGTAGTGCTGAAAAGTAGTGGTGGCAGCGCTTAGGAGGTATTGGTGGCAGTGCTAAGGAAGTAG
AGGTGGCAGTCTAAGGAAGTAGTGGTAGCATTGCTAAGGAAGGAGTGGTGGTCGTAAGCCGGTTC
GGGTAGTATAGACGGTTCTAAAGCCGGTAGTAGGGTACACGAGTTATAGTGGCAATACCACCATG
GTCAACTTTAACCGGGCTCTAACCGGGCTCTAATCGGGCTCTAATCTGACCTCCACCCACATTCC
ATCGCATTCCACAGCCCAACGCGTCCACAAAACCCCACATCGCAC
Found at i:113986 original size:12 final size:12
Alignment explanation
Indices: 113951--114035 Score: 99
Period size: 12 Copynumber: 7.5 Consensus size: 12
113941 AATTGTGGAG
113951 GTAGTGG-GGTA
1 GTAGTGGTGGTA
113962 GTAGTGG-GGTA
1 GTAGTGGTGGTA
* *
113973 GTTGTAGTGGTA
1 GTAGTGGTGGTA
113985 GTAGTGGTGGTA
1 GTAGTGGTGGTA
113997 GTAGTGGT-G--
1 GTAGTGGTGGTA
114006 GTAGTGGTGGTA
1 GTAGTGGTGGTA
* *
114018 GTAGCGGTGGCA
1 GTAGTGGTGGTA
114030 GTAGTG
1 GTAGTG
114036 CTGAAAAGTA
Statistics
Matches: 63, Mismatches: 7, Indels: 7
0.82 0.09 0.09
Matches are distributed among these distances:
9 8 0.13
10 1 0.02
11 17 0.27
12 37 0.59
ACGTcount: A:0.16, C:0.02, G:0.51, T:0.31
Consensus pattern (12 bp):
GTAGTGGTGGTA
Left flanking sequence: Indices 113451 -- 113950
GACGGTGCCCGACTTGCTCGACCGCAACACCGAGTACCACGCCCTGCCCGGGGACGCGCTGTTGC
CGCGGCTCTACCCGCGTGACGGCTGGCGGTCGCTGGAGGAGGAGTACAACCGGTGCTTTACGCTC
TGGTTGGGTCCCAAACGCCGGATCCGCACCGACCACTTGGCGGACAACGACGTGTTGAACCCGGG
GTTTGCTACGTTGGTGCGGCGGCTCGGGGTCACCGGGAAGTCGCTCGTGTTCATGGCCCGCAGTC
GCCAGGAGCGGGAGTTGTGGACACGGGATATTCTTGCAGAGATTGACCGGGCCACGCTCGGAGTG
AAGACTTAAAACAAGAGTGAAACGTGAGTGAAACTTGATAGAGTGAAACTTGATAGACTGATAGA
TAATAACTAATACGTAATGCGATACTGGTGCTATGTAGTGTGGAGATGGTTTGTTGGTAGGTTTA
AGTTGAATAAGTAAATACCAAATATAGGGGAAGGCAATTGTGGAG
Right flanking sequence: Indices 114036 -- 114535
CTGAAAAGTAGTGGTGGCAGCGCTTAGGAGGTATTGGTGGCAGTGCTAAGGAAGTAGAGGTGGCA
GTCTAAGGAAGTAGTGGTAGCATTGCTAAGGAAGGAGTGGTGGTCGTAAGCCGGTTCGGGTAGTA
TAGACGGTTCTAAAGCCGGTAGTAGGGTACACGAGTTATAGTGGCAATACCACCATGGTCAACTT
TAACCGGGCTCTAACCGGGCTCTAATCGGGCTCTAATCTGACCTCCACCCACATTCCATCGCATT
CCACAGCCCAACGCGTCCACAAAACCCCACATCGCACCACTTATGTCGCTGCTGGGGTCACACTT
CCGCATGAGCCGTGCGCCACCTTCGCTCGCTCCTCCACCGTCGTCTACGCGTACAATAGTGTCGT
GGTCATTAATGCATATAAATAAGGAGAGGGTCACACAACCACTCTCAGGTGGCCCACATCGCTGT
AACTGTTCACATGGCCAAACCGGCTGTCGCTCAGCACGTTCAGCG
Found at i:114026 original size:21 final size:21
Alignment explanation
Indices: 113976--114027 Score: 86
Period size: 21 Copynumber: 2.5 Consensus size: 21
113966 TGGGGTAGTT
*
113976 GTAGTGGTAGTAGTGGTGGTA
1 GTAGTGGTGGTAGTGGTGGTA
113997 GTAGTGGTGGTAGTGGTGGTA
1 GTAGTGGTGGTAGTGGTGGTA
*
114018 GTAGCGGTGG
1 GTAGTGGTGG
114028 CAGTAGTGCT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.15, C:0.02, G:0.52, T:0.31
Consensus pattern (21 bp):
GTAGTGGTGGTAGTGGTGGTA
Left flanking sequence: Indices 113476 -- 113975
AACACCGAGTACCACGCCCTGCCCGGGGACGCGCTGTTGCCGCGGCTCTACCCGCGTGACGGCTG
GCGGTCGCTGGAGGAGGAGTACAACCGGTGCTTTACGCTCTGGTTGGGTCCCAAACGCCGGATCC
GCACCGACCACTTGGCGGACAACGACGTGTTGAACCCGGGGTTTGCTACGTTGGTGCGGCGGCTC
GGGGTCACCGGGAAGTCGCTCGTGTTCATGGCCCGCAGTCGCCAGGAGCGGGAGTTGTGGACACG
GGATATTCTTGCAGAGATTGACCGGGCCACGCTCGGAGTGAAGACTTAAAACAAGAGTGAAACGT
GAGTGAAACTTGATAGAGTGAAACTTGATAGACTGATAGATAATAACTAATACGTAATGCGATAC
TGGTGCTATGTAGTGTGGAGATGGTTTGTTGGTAGGTTTAAGTTGAATAAGTAAATACCAAATAT
AGGGGAAGGCAATTGTGGAGGTAGTGGGGTAGTAGTGGGGTAGTT
Right flanking sequence: Indices 114028 -- 114527
CAGTAGTGCTGAAAAGTAGTGGTGGCAGCGCTTAGGAGGTATTGGTGGCAGTGCTAAGGAAGTAG
AGGTGGCAGTCTAAGGAAGTAGTGGTAGCATTGCTAAGGAAGGAGTGGTGGTCGTAAGCCGGTTC
GGGTAGTATAGACGGTTCTAAAGCCGGTAGTAGGGTACACGAGTTATAGTGGCAATACCACCATG
GTCAACTTTAACCGGGCTCTAACCGGGCTCTAATCGGGCTCTAATCTGACCTCCACCCACATTCC
ATCGCATTCCACAGCCCAACGCGTCCACAAAACCCCACATCGCACCACTTATGTCGCTGCTGGGG
TCACACTTCCGCATGAGCCGTGCGCCACCTTCGCTCGCTCCTCCACCGTCGTCTACGCGTACAAT
AGTGTCGTGGTCATTAATGCATATAAATAAGGAGAGGGTCACACAACCACTCTCAGGTGGCCCAC
ATCGCTGTAACTGTTCACATGGCCAAACCGGCTGTCGCTCAGCAC
Found at i:114109 original size:22 final size:23
Alignment explanation
Indices: 114041--114143 Score: 127
Period size: 23 Copynumber: 4.5 Consensus size: 23
114031 TAGTGCTGAA
* *
114041 AAGTAGTGGTGGCAGCGCTTAGG
1 AAGTAGTGGTGGCAGTGCTAAGG
* *
114064 AGGTATTGGTGGCAGTGCTAAGG
1 AAGTAGTGGTGGCAGTGCTAAGG
*
114087 AAGTAGAGGTGGCAGT-CTAAGG
1 AAGTAGTGGTGGCAGTGCTAAGG
* *
114109 AAGTAGTGGTAGCATTGCTAAGG
1 AAGTAGTGGTGGCAGTGCTAAGG
*
114132 AAGGAGTGGTGG
1 AAGTAGTGGTGG
114144 TCGTAAGCCG
Statistics
Matches: 67, Mismatches: 12, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
22 19 0.28
23 48 0.72
ACGTcount: A:0.26, C:0.09, G:0.43, T:0.22
Consensus pattern (23 bp):
AAGTAGTGGTGGCAGTGCTAAGG
Left flanking sequence: Indices 113541 -- 114040
GCGGTCGCTGGAGGAGGAGTACAACCGGTGCTTTACGCTCTGGTTGGGTCCCAAACGCCGGATCC
GCACCGACCACTTGGCGGACAACGACGTGTTGAACCCGGGGTTTGCTACGTTGGTGCGGCGGCTC
GGGGTCACCGGGAAGTCGCTCGTGTTCATGGCCCGCAGTCGCCAGGAGCGGGAGTTGTGGACACG
GGATATTCTTGCAGAGATTGACCGGGCCACGCTCGGAGTGAAGACTTAAAACAAGAGTGAAACGT
GAGTGAAACTTGATAGAGTGAAACTTGATAGACTGATAGATAATAACTAATACGTAATGCGATAC
TGGTGCTATGTAGTGTGGAGATGGTTTGTTGGTAGGTTTAAGTTGAATAAGTAAATACCAAATAT
AGGGGAAGGCAATTGTGGAGGTAGTGGGGTAGTAGTGGGGTAGTTGTAGTGGTAGTAGTGGTGGT
AGTAGTGGTGGTAGTGGTGGTAGTAGCGGTGGCAGTAGTGCTGAA
Right flanking sequence: Indices 114144 -- 114643
TCGTAAGCCGGTTCGGGTAGTATAGACGGTTCTAAAGCCGGTAGTAGGGTACACGAGTTATAGTG
GCAATACCACCATGGTCAACTTTAACCGGGCTCTAACCGGGCTCTAATCGGGCTCTAATCTGACC
TCCACCCACATTCCATCGCATTCCACAGCCCAACGCGTCCACAAAACCCCACATCGCACCACTTA
TGTCGCTGCTGGGGTCACACTTCCGCATGAGCCGTGCGCCACCTTCGCTCGCTCCTCCACCGTCG
TCTACGCGTACAATAGTGTCGTGGTCATTAATGCATATAAATAAGGAGAGGGTCACACAACCACT
CTCAGGTGGCCCACATCGCTGTAACTGTTCACATGGCCAAACCGGCTGTCGCTCAGCACGTTCAG
CGGGATAAGCTCGAGATGGCCCAGTGCGAGAAGGCCCCCGGTGGGGGCTCCGTAGTAGCCTGGGT
AGTCGCAGATGCGCCGCAGCAGCACGCTCACCAGCTCGAGCGACA
Found at i:114143 original size:45 final size:46
Alignment explanation
Indices: 114045--114143 Score: 119
Period size: 45 Copynumber: 2.2 Consensus size: 46
114035 GCTGAAAAGT
* * * * *
114045 AGTGGTGGCAGCGCTTAGGAGGTATTGGTGGCAGTGCTAAGGAAGT
1 AGTGGTGGCAGCGCTAAGGAAGTAGTGGTAGCAGTGCTAAGGAAGG
* * *
114091 AGAGGTGGCAG-TCTAAGGAAGTAGTGGTAGCATTGCTAAGGAAGG
1 AGTGGTGGCAGCGCTAAGGAAGTAGTGGTAGCAGTGCTAAGGAAGG
114136 AGTGGTGG
1 AGTGGTGG
114144 TCGTAAGCCG
Statistics
Matches: 44, Mismatches: 9, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
45 34 0.77
46 10 0.23
ACGTcount: A:0.25, C:0.09, G:0.43, T:0.22
Consensus pattern (46 bp):
AGTGGTGGCAGCGCTAAGGAAGTAGTGGTAGCAGTGCTAAGGAAGG
Left flanking sequence: Indices 113545 -- 114044
TCGCTGGAGGAGGAGTACAACCGGTGCTTTACGCTCTGGTTGGGTCCCAAACGCCGGATCCGCAC
CGACCACTTGGCGGACAACGACGTGTTGAACCCGGGGTTTGCTACGTTGGTGCGGCGGCTCGGGG
TCACCGGGAAGTCGCTCGTGTTCATGGCCCGCAGTCGCCAGGAGCGGGAGTTGTGGACACGGGAT
ATTCTTGCAGAGATTGACCGGGCCACGCTCGGAGTGAAGACTTAAAACAAGAGTGAAACGTGAGT
GAAACTTGATAGAGTGAAACTTGATAGACTGATAGATAATAACTAATACGTAATGCGATACTGGT
GCTATGTAGTGTGGAGATGGTTTGTTGGTAGGTTTAAGTTGAATAAGTAAATACCAAATATAGGG
GAAGGCAATTGTGGAGGTAGTGGGGTAGTAGTGGGGTAGTTGTAGTGGTAGTAGTGGTGGTAGTA
GTGGTGGTAGTGGTGGTAGTAGCGGTGGCAGTAGTGCTGAAAAGT
Right flanking sequence: Indices 114144 -- 114643
TCGTAAGCCGGTTCGGGTAGTATAGACGGTTCTAAAGCCGGTAGTAGGGTACACGAGTTATAGTG
GCAATACCACCATGGTCAACTTTAACCGGGCTCTAACCGGGCTCTAATCGGGCTCTAATCTGACC
TCCACCCACATTCCATCGCATTCCACAGCCCAACGCGTCCACAAAACCCCACATCGCACCACTTA
TGTCGCTGCTGGGGTCACACTTCCGCATGAGCCGTGCGCCACCTTCGCTCGCTCCTCCACCGTCG
TCTACGCGTACAATAGTGTCGTGGTCATTAATGCATATAAATAAGGAGAGGGTCACACAACCACT
CTCAGGTGGCCCACATCGCTGTAACTGTTCACATGGCCAAACCGGCTGTCGCTCAGCACGTTCAG
CGGGATAAGCTCGAGATGGCCCAGTGCGAGAAGGCCCCCGGTGGGGGCTCCGTAGTAGCCTGGGT
AGTCGCAGATGCGCCGCAGCAGCACGCTCACCAGCTCGAGCGACA
Found at i:114247 original size:11 final size:11
Alignment explanation
Indices: 114231--114266 Score: 63
Period size: 11 Copynumber: 3.3 Consensus size: 11
114221 TGGTCAACTT
114231 TAACCGGGCTC
1 TAACCGGGCTC
114242 TAACCGGGCTC
1 TAACCGGGCTC
*
114253 TAATCGGGCTC
1 TAACCGGGCTC
114264 TAA
1 TAA
114267 TCTGACCTCC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
11 24 1.00
ACGTcount: A:0.22, C:0.31, G:0.25, T:0.22
Consensus pattern (11 bp):
TAACCGGGCTC
Left flanking sequence: Indices 113731 -- 114230
ACACGGGATATTCTTGCAGAGATTGACCGGGCCACGCTCGGAGTGAAGACTTAAAACAAGAGTGA
AACGTGAGTGAAACTTGATAGAGTGAAACTTGATAGACTGATAGATAATAACTAATACGTAATGC
GATACTGGTGCTATGTAGTGTGGAGATGGTTTGTTGGTAGGTTTAAGTTGAATAAGTAAATACCA
AATATAGGGGAAGGCAATTGTGGAGGTAGTGGGGTAGTAGTGGGGTAGTTGTAGTGGTAGTAGTG
GTGGTAGTAGTGGTGGTAGTGGTGGTAGTAGCGGTGGCAGTAGTGCTGAAAAGTAGTGGTGGCAG
CGCTTAGGAGGTATTGGTGGCAGTGCTAAGGAAGTAGAGGTGGCAGTCTAAGGAAGTAGTGGTAG
CATTGCTAAGGAAGGAGTGGTGGTCGTAAGCCGGTTCGGGTAGTATAGACGGTTCTAAAGCCGGT
AGTAGGGTACACGAGTTATAGTGGCAATACCACCATGGTCAACTT
Right flanking sequence: Indices 114267 -- 114766
TCTGACCTCCACCCACATTCCATCGCATTCCACAGCCCAACGCGTCCACAAAACCCCACATCGCA
CCACTTATGTCGCTGCTGGGGTCACACTTCCGCATGAGCCGTGCGCCACCTTCGCTCGCTCCTCC
ACCGTCGTCTACGCGTACAATAGTGTCGTGGTCATTAATGCATATAAATAAGGAGAGGGTCACAC
AACCACTCTCAGGTGGCCCACATCGCTGTAACTGTTCACATGGCCAAACCGGCTGTCGCTCAGCA
CGTTCAGCGGGATAAGCTCGAGATGGCCCAGTGCGAGAAGGCCCCCGGTGGGGGCTCCGTAGTAG
CCTGGGTAGTCGCAGATGCGCCGCAGCAGCACGCTCACCAGCTCGAGCGACATGCGCAGCATCGC
GGCCGGGGCCAACGCCACGGGCAGCGGGGCCACTGCTGCCTTGGGAGCGTGTCGCGACTGGCGGG
AGTTCCGTCGGGCTTTCCGACGGCGCCAAGGAATATAGCGGAAAA
Found at i:118990 original size:14 final size:14
Alignment explanation
Indices: 118955--119002 Score: 73
Period size: 14 Copynumber: 3.6 Consensus size: 14
118945 GTGAAGACTG
118955 GACGATTGCGTTGT
1 GACGATTGCGTTGT
*
118969 TA--ATTGCGTTGT
1 GACGATTGCGTTGT
118981 GACGATTGCGTTGT
1 GACGATTGCGTTGT
118995 GACGATTG
1 GACGATTG
119003 AGCTCTGTTG
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
12 11 0.37
14 19 0.63
ACGTcount: A:0.17, C:0.12, G:0.33, T:0.38
Consensus pattern (14 bp):
GACGATTGCGTTGT
Left flanking sequence: Indices 118455 -- 118954
GGCGCCCATGTCGCTGGAGATCAACGACCCCATCATGAAGACGTTGAAGGACGACTACGGTATCT
TCTTGACCGAGAAGACCGTTGGTTAGAGATAGGAAGAATAAAGAAACAAGTGAACTGGTGCAAGT
GAAAAGTAGGTAGAAGTGAAAAGTAGTGTGTGTGACCTGGTAAGGTGTGCTTTGGAGGTGTGTGT
TCTGGTAAGGTGTTATTGTATAGCGGCTTCTATACCGCTGGCTTCTTAGTTGTATCGCGAGGTTC
CATTATATGACCAATTGAAAATCAGCTGAGAAAACCAGAATATATGGGGTGTTCATAGGTGTTTC
GGTGGCAAAAGAGGGGACGGGCCGGTGGCTCGGACACTGCGTCCGAGTTTTGGTGGGTGGTGTGC
GCTTGCCCGATCAGGACAGAGCTAGCCGAAATGAGATGGTTTAATGGCAAACAGATTGGGATTTT
CATTTTAAAACATTTAGATATTACACGGTTGTGTTGTGAAGACTG
Right flanking sequence: Indices 119003 -- 119502
AGCTCTGTTGCCCGGTCTCGGGTTTCTCATAAAACCGTGATCTGGATCCGTTCACATGTAGGCAC
TATCTTAATTACGTAATGCCAAGGCACGGCTATCTGCTCAACGTGCTCATTGTACCCTGACCATA
ATCCTATTTTTGTCACCTTGCAAATGACACCAGTTCGTTGCCATGTCGCTAAGGCACGCCATATA
GCCAATGCGGTAATACATGCGAACCCTGGACCCCTCCTTCTACCCCAACAAACCGACCCCGCCGA
CCCCGCCTCCTCCATTTACCTCTACTCCCTTTTCACCCTTCCCCCCGCTCCCGATTTTCTCCTAC
CTTGGCGTCTAAGCCTCAGCCTCGATCTGTTCTCGGATGTACACAGAAGCGAGCCTCAACGCACC
ACACACACGCCATACTACCACCCAGTAACCCTTAAACTAACCCCTAATCTAGCCCCGAAATTAAC
CCAACCCTGTTCGTTCTCGTCAATTCCTTCCCACCCCCACCTCTA
Found at i:119577 original size:16 final size:16
Alignment explanation
Indices: 119530--119577 Score: 55
Period size: 16 Copynumber: 3.1 Consensus size: 16
119520 TCCCTTCCTT
*
119530 CTTCCCATCTTCTTCC
1 CTTCCCATCTTCTTTC
*
119546 CATCCCCA-CTTC-TTC
1 C-TTCCCATCTTCTTTC
119561 CTTCCCATCTTCTTTC
1 CTTCCCATCTTCTTTC
119577 C
1 C
119578 GCGCTGTGCG
Statistics
Matches: 26, Mismatches: 3, Indels: 6
0.74 0.09 0.17
Matches are distributed among these distances:
14 5 0.19
15 7 0.27
16 9 0.35
17 5 0.19
ACGTcount: A:0.08, C:0.50, G:0.00, T:0.42
Consensus pattern (16 bp):
CTTCCCATCTTCTTTC
Left flanking sequence: Indices 119030 -- 119529
CATAAAACCGTGATCTGGATCCGTTCACATGTAGGCACTATCTTAATTACGTAATGCCAAGGCAC
GGCTATCTGCTCAACGTGCTCATTGTACCCTGACCATAATCCTATTTTTGTCACCTTGCAAATGA
CACCAGTTCGTTGCCATGTCGCTAAGGCACGCCATATAGCCAATGCGGTAATACATGCGAACCCT
GGACCCCTCCTTCTACCCCAACAAACCGACCCCGCCGACCCCGCCTCCTCCATTTACCTCTACTC
CCTTTTCACCCTTCCCCCCGCTCCCGATTTTCTCCTACCTTGGCGTCTAAGCCTCAGCCTCGATC
TGTTCTCGGATGTACACAGAAGCGAGCCTCAACGCACCACACACACGCCATACTACCACCCAGTA
ACCCTTAAACTAACCCCTAATCTAGCCCCGAAATTAACCCAACCCTGTTCGTTCTCGTCAATTCC
TTCCCACCCCCACCTCTACTCAATCTCCACACCTTTCCCTTCCTT
Right flanking sequence: Indices 119578 -- 120077
GCGCTGTGCGGCTCGAATCCACAATGGGTAAGTACCCCTACCACACCAATAGCCCCACCCATGAC
TAACCGACTAGGCGTTGCGTTGTGGTTGTGCCCCCGGCAGAACACGGGCCTCTACGACAAACTCA
CCACGCTCATGTCCTCGCTCAACACCCTCTTCCCGGGCCAGCCGCCCCGGTTCGAGCCCCATGTT
ACCATCACCACCCAGGTGGCGGTGGACCTCGATGACGCGGCTCGCACGCGAGACGACGTCGACCG
CGTGCTCGGGGCCTGTGTGGCTGCCCTTCGTGGGCTGCCGAAGGACCAGGGCGAGCTCGTGGTGT
TGGGCAAGCTCGACTCGCAGCGAAAGTACTTCAAGAAGCTCTACTTCGAGGTGGAGCGCAATCCC
TCGCTCGTGCTGTTTGCCCAGATCATCCGTGAGTTGTTTGTCATCTTGCCTGGCGACATTGCCCG
CGAGCAGCAACGGGCCAACCCGGAGCTCTACACCACCGCTGCGGA
Found at i:120478 original size:23 final size:23
Alignment explanation
Indices: 120448--120495 Score: 78
Period size: 23 Copynumber: 2.1 Consensus size: 23
120438 AATAAACAAA
120448 TTAATGGGATGTAGTGGGGTGTG
1 TTAATGGGATGTAGTGGGGTGTG
* *
120471 TTAATGGGATGTGGTTGGGTGTG
1 TTAATGGGATGTAGTGGGGTGTG
120494 TT
1 TT
120496 GCATTGGTGA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.15, C:0.00, G:0.46, T:0.40
Consensus pattern (23 bp):
TTAATGGGATGTAGTGGGGTGTG
Left flanking sequence: Indices 119948 -- 120447
TCGAGGTGGAGCGCAATCCCTCGCTCGTGCTGTTTGCCCAGATCATCCGTGAGTTGTTTGTCATC
TTGCCTGGCGACATTGCCCGCGAGCAGCAACGGGCCAACCCGGAGCTCTACACCACCGCTGCGGA
CGGGCTGGTGCAGCGAAAAAAGCTGAAGCTGAAGAAACAGGTGGCGGAGAAGGCGGTGGACACGC
TGGAAATCCGCCAGCTGGCGCCCCACAAGGCTGCGGCCTGGGCCCAGGACGAGTTCCATCCGCAC
TTGAGCCTTGTGTACTCGGAAATGCACCCCATCAGCAACGCGTTGTGGCGGACCATCCGCACACG
GGTCCAGGACTACTTGGACGCGGACGACTGCGACGAGCCGGGGCTCTCGTGGGACGGCGGGGTGT
TGAAGCTCGTGTTGTGCGAGGGCGATGTGTCGGAGTGGGTGGTGTTAGGCAGCGTGGATATTCAC
TGATAGACGGGTGCTGGGCTCTGCTCTAGATATGCAATAAACAAA
Right flanking sequence: Indices 120496 -- 120995
GCATTGGTGATTGGAGCGGTCTGTTGTAGGTTAAAGAGATGGGCGCGAGATAAGGCTTTGTTTTA
TTTAATAGGCTCTGTAAGGTATTTTTTGGATCTCAAACGAGACTCTTGGAGTATCACCTGTTTAC
TTTTTCTATTCCGAGCGTTAGTCTGGTGATTATCGGATATGAAGAATTGGCTTGATTACGGGTCC
TACACATAAATCGAGCTGAAGGTCCACTATTCTTCGATTCAATGGTGTACTCGGAGTGAGGGAAG
ATCCCGAGAGCAGTGATTCCATAGTTTTGTGGCTACTTCACTCCTTCTACTCGTGCGTTTGTCTT
TGATTTCACCCGTGCGTTCGTCTTCGCTTTCTGGATCAGCAAATTTGCAACCCTCTCTGCAGCCC
CTTGCAGTCATTTTGCAGCCATTGTTCACACACAAGAAACGGCGCCAATCAAACCAGGTAACCTA
GCCCACAAATTTGGCAGCTTAAAACTCGCACAACGGTATTAATCA
Found at i:125241 original size:12 final size:12
Alignment explanation
Indices: 125224--125250 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
125214 TTCTTATCGT
125224 GAGGCGGGGGAG
1 GAGGCGGGGGAG
125236 GAGGCGGGGGAG
1 GAGGCGGGGGAG
125248 GAG
1 GAG
125251 CCGTTTTGGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.19, C:0.07, G:0.74, T:0.00
Consensus pattern (12 bp):
GAGGCGGGGGAG
Left flanking sequence: Indices 124724 -- 125223
CAGCTCCTTCTTCTTGTACGCGGGCTCCACCACCCAGTGCCGCTTGAAACCAGGCACATCGAGGG
CAACGTAGGCAAAGTCCGACGACCACCACGTCTTGTCAAACTGCTCCAACGTGACAGTGCCCACC
TTGCCGTTCTTTGGCAGTTCCACGACAAACTTCATGAACAACCGCTCGACCCCGTCCTTGCCCAT
CATCTTGACGGCCTGAGGAGGACGGTTGCGCACCCATTTGCCCGCAGTGACGTCACCGTGGGCCT
TAAGACGCTGGCCAGCCTCGATTTCAAACACTTTTTGCACCTTGGGGTCGGCCTCCACGAGCCTC
ACCGCCTTGTTGAAGGTTTTGGTGTCCCCCAGCGGCAAAAACAACTCGGAGAAGATGAGCGAGAC
CACAAGGGCGGAGATACCAACGCCACCCACCACGAGCACCGTCAGTGCAGACCAGGTGAACGCGC
GGTTGATCTTGTTGAGGATCAGTTTCCCCTTGGCGTTCTTATCGT
Right flanking sequence: Indices 125251 -- 125750
CCGTTTTGGTGGAGTAGAGGCGGGGAAGAAACGTGGGACGGGCCATCCGGGCGACGGGGCGTCTG
GCCACGAGTCCGAGCGACAGCGTTAGTCTCATCATGGTTCGGTGTCGGGGTTTATTGCGCACGAA
AAAGGAAATGGGGTGGAAGGGGACGGTAGGACGAGTGGGTGGAGGAGAGTGGAGGAGAGTGGAGG
GACTGGGAGGGAGAAAGAGGAGAAGTGAGTGGTGAGAGAAAGTGAATGCTATATACGATGTTGCC
TACGAGGGGTCAAGGGACAAGGGTTTAAACACTGGCAAATGCTCCATGGCCTGATGAGTTGCGGG
GAACGAGATGTGTGAAAGGTGGCCAATTGGACGGGACCACACAGAGTGGTGATTGCCTAACAATT
TTGAAGCGACTGTTGGCTTGTTAGTTGCATTGAACGACTGTGTGGTGGGGAATTGCGAGGTGGTT
GGCTGCTAGGGGCCAGACACTTTTTGGCAAATTCAGGCCGCAAAA
Found at i:125434 original size:10 final size:10
Alignment explanation
Indices: 125419--125445 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
125409 GGACGAGTGG
125419 GTGGAGGAGA
1 GTGGAGGAGA
125429 GTGGAGGAGA
1 GTGGAGGAGA
125439 GTGGAGG
1 GTGGAGG
125446 GACTGGGAGG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.26, C:0.00, G:0.63, T:0.11
Consensus pattern (10 bp):
GTGGAGGAGA
Left flanking sequence: Indices 124919 -- 125418
CATCTTGACGGCCTGAGGAGGACGGTTGCGCACCCATTTGCCCGCAGTGACGTCACCGTGGGCCT
TAAGACGCTGGCCAGCCTCGATTTCAAACACTTTTTGCACCTTGGGGTCGGCCTCCACGAGCCTC
ACCGCCTTGTTGAAGGTTTTGGTGTCCCCCAGCGGCAAAAACAACTCGGAGAAGATGAGCGAGAC
CACAAGGGCGGAGATACCAACGCCACCCACCACGAGCACCGTCAGTGCAGACCAGGTGAACGCGC
GGTTGATCTTGTTGAGGATCAGTTTCCCCTTGGCGTTCTTATCGTGAGGCGGGGGAGGAGGCGGG
GGAGGAGCCGTTTTGGTGGAGTAGAGGCGGGGAAGAAACGTGGGACGGGCCATCCGGGCGACGGG
GCGTCTGGCCACGAGTCCGAGCGACAGCGTTAGTCTCATCATGGTTCGGTGTCGGGGTTTATTGC
GCACGAAAAAGGAAATGGGGTGGAAGGGGACGGTAGGACGAGTGG
Right flanking sequence: Indices 125446 -- 125945
GACTGGGAGGGAGAAAGAGGAGAAGTGAGTGGTGAGAGAAAGTGAATGCTATATACGATGTTGCC
TACGAGGGGTCAAGGGACAAGGGTTTAAACACTGGCAAATGCTCCATGGCCTGATGAGTTGCGGG
GAACGAGATGTGTGAAAGGTGGCCAATTGGACGGGACCACACAGAGTGGTGATTGCCTAACAATT
TTGAAGCGACTGTTGGCTTGTTAGTTGCATTGAACGACTGTGTGGTGGGGAATTGCGAGGTGGTT
GGCTGCTAGGGGCCAGACACTTTTTGGCAAATTCAGGCCGCAAAAATCAATTTGCTTGCAAAACA
AGTTAATTATCATGACCCCTATAGTGTTTCATGTTGAATCGAGGTTCCAGTTGTTGGCAGAATTC
ACTTTTCTGACACATTTTTGCACCAAATCAGCCTCGCCGTCATCATCCGTCTACAAACCCCCGCA
ATAAATTGAGCGCCCGTGGCCCAATGGCAAGGCGTCACTTTCCGG
Found at i:127997 original size:8 final size:8
Alignment explanation
Indices: 127981--128061 Score: 110
Period size: 8 Copynumber: 10.1 Consensus size: 8
127971 AAGCCATATG
127981 ACTAATTC
1 ACTAATTC
*
127989 ACCAATTC
1 ACTAATTC
127997 ACTAATTC
1 ACTAATTC
128005 ACTAA-TC
1 ACTAATTC
*
128012 TAATAATTC
1 -ACTAATTC
128021 ACTAATTC
1 ACTAATTC
*
128029 ATTAATTC
1 ACTAATTC
128037 ACTAATTC
1 ACTAATTC
*
128045 ATTAATTC
1 ACTAATTC
128053 ACTAATTC
1 ACTAATTC
128061 A
1 A
128062 ACCAATACAT
Statistics
Matches: 63, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
7 2 0.03
8 59 0.94
9 2 0.03
ACGTcount: A:0.40, C:0.22, G:0.00, T:0.38
Consensus pattern (8 bp):
ACTAATTC
Left flanking sequence: Indices 127481 -- 127980
GGGCTCGTAAAACCTTCTATCACCATTCTCTCACCCCTTTACACCTTCCTCCACCACTGTTCTTC
ACTTTCCTTTCAGCGTTCTCCATCTTGAGTAAGCTACCTTTATTAGGTGGTAGTTGCAGCCAAAC
CGTTATGGCGCCAGCACCGTACCCCATGTCGGAGAGCTACGAGACGGAGCAAATAGTGGTACCGT
TGATTGTCAAAAAGCAGTTTGAGAAACCTCAATGCCCCCCGCCGGTTGCTTTTCCTACTATCAAG
CGCCAGCCAGCACCGACGTCTGATGATAAGCTCCTGTGGATGTACCACACAAAGACCAGACGGAG
CCGTACGCCTACCCTAAAAGAAGAAACCCACAGCCAGCGGCCTCTGGGCTCGTTTGAGTACACTA
GAACCGCGCCAAGCCACCAGGTTGACGAGGATACTGACTCCCTGTGTTGGCGACTCTGGTGCGTG
TGGTTTAGCTAGCCGGCCTAGCGCAATAATACCCAAAGCCATATG
Right flanking sequence: Indices 128062 -- 128561
ACCAATACATGGCATTCTCTTCACTCAATTGACCAGTAGCAGACCTCAACTCAATACAAACGATG
GACTACCACACTGGTCAATCGCATCCTCACTGCTACAACCACACAACCCACCTGCTACAATCCAC
AACCCTCATTGCTACAATCCACAACCCTCACTGCCACACACCCAATCTTACTTTTATTTGATTTA
AACAATACGCTTACTCCGCGGCCTGGGCAAACTTGTCGGAAATGTTGGTCAACAACTCGCTGAAC
TTCTTGCGGCCCGCCTCTTCACCCTCCGACGGCTCCACAAACTTCGCCAGCGACACCCCGTGCTT
GACGTCCTTGGTGGCCTCGGCCAACTTCGCCCAGTTGGCGCCGTTGGCAATGGCCTTTTGCGCCT
CGTCGTGGTAGAGCATGAACGCCCGCATCATGTCGAAGGTCTTCCAGATGGGACAGAACTGGTCG
TACGACGAGTAACCGTTCTGCTGCAAAAAATCTTCCTTGACCAAG
Found at i:128184 original size:22 final size:22
Alignment explanation
Indices: 128154--128225 Score: 92
Period size: 22 Copynumber: 3.3 Consensus size: 22
128144 ATCGCATCCT
*
128154 CACTGCTACAACCACACAACCCA
1 CACTGCTACAATC-CACAACCCA
*
128177 C-CTGCTACAATCCACAACCCT
1 CACTGCTACAATCCACAACCCA
* *
128198 CATTGCTACAATCCACAACCCT
1 CACTGCTACAATCCACAACCCA
128220 CACTGC
1 CACTGC
128226 CACACACCCA
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
21 9 0.20
22 34 0.77
23 1 0.02
ACGTcount: A:0.32, C:0.46, G:0.06, T:0.17
Consensus pattern (22 bp):
CACTGCTACAATCCACAACCCA
Left flanking sequence: Indices 127654 -- 128153
ACGGAGCAAATAGTGGTACCGTTGATTGTCAAAAAGCAGTTTGAGAAACCTCAATGCCCCCCGCC
GGTTGCTTTTCCTACTATCAAGCGCCAGCCAGCACCGACGTCTGATGATAAGCTCCTGTGGATGT
ACCACACAAAGACCAGACGGAGCCGTACGCCTACCCTAAAAGAAGAAACCCACAGCCAGCGGCCT
CTGGGCTCGTTTGAGTACACTAGAACCGCGCCAAGCCACCAGGTTGACGAGGATACTGACTCCCT
GTGTTGGCGACTCTGGTGCGTGTGGTTTAGCTAGCCGGCCTAGCGCAATAATACCCAAAGCCATA
TGACTAATTCACCAATTCACTAATTCACTAATCTAATAATTCACTAATTCATTAATTCACTAATT
CATTAATTCACTAATTCAACCAATACATGGCATTCTCTTCACTCAATTGACCAGTAGCAGACCTC
AACTCAATACAAACGATGGACTACCACACTGGTCAATCGCATCCT
Right flanking sequence: Indices 128226 -- 128725
CACACACCCAATCTTACTTTTATTTGATTTAAACAATACGCTTACTCCGCGGCCTGGGCAAACTT
GTCGGAAATGTTGGTCAACAACTCGCTGAACTTCTTGCGGCCCGCCTCTTCACCCTCCGACGGCT
CCACAAACTTCGCCAGCGACACCCCGTGCTTGACGTCCTTGGTGGCCTCGGCCAACTTCGCCCAG
TTGGCGCCGTTGGCAATGGCCTTTTGCGCCTCGTCGTGGTAGAGCATGAACGCCCGCATCATGTC
GAAGGTCTTCCAGATGGGACAGAACTGGTCGTACGACGAGTAACCGTTCTGCTGCAAAAAATCTT
CCTTGACCAAGTTGGCAACGTCCAAGGTGATCTTGTCGCCGTCGGAAAGCGCCAGCTTACCCACC
AACTGCACAACCTGCTCCAACTCCTCGGCGTTGGACAAGATCTCCTTGATCTTGGTCCGCAACTG
GGGGAACTCGGGGAAGTTCTCGTCGTAGTACTTGTTCAAGATCAG
Found at i:130159 original size:13 final size:13
Alignment explanation
Indices: 130141--130175 Score: 61
Period size: 13 Copynumber: 2.7 Consensus size: 13
130131 CATTGGGAGA
*
130141 GTGGAGAATAGGT
1 GTGGAGAATAGAT
130154 GTGGAGAATAGAT
1 GTGGAGAATAGAT
130167 GTGGAGAAT
1 GTGGAGAAT
130176 GGGGATGAGG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.34, C:0.00, G:0.43, T:0.23
Consensus pattern (13 bp):
GTGGAGAATAGAT
Left flanking sequence: Indices 129641 -- 130140
CCCGAAAATGTCGCCACCGGTGATCAAGTCGCCCACCTTCACCTCGGAGTTGGGGGTGTACTTGT
ACTTCTTTTCGCGGTTCAACGCGGGGACGTCGATACCACGGGGGATGTAGATCGACGACGACAAC
TCGGCAATCAGCTTGAGCGGACGCTGGATACCGTCGTAGATCGTCTCCATCAACCCGGGGCCCAA
CTCCACCATGAGCGGCTGGTGGGACCGCTGCACGGGGTCACCGACACAGAGACCGTCACCCAACT
CGAACAACTGACAGGTGATGTAGGGCGAAGACACTCTGATGACCTCGGCAAGCAACCCGATGTGG
CCCACCTTGATGACCTCGTGCATCGAGGCGTTCAACTCGGCAACCACCACCGGCCCGGAAATGGA
AAAGATCTTGCCAAAGTCCTTGGCGTCGGCGTCCACCGACAACTTTTCGAGATCCTTGCGCGCGT
TCTCAAGAGCACCAGCCTGGATGTTAGTATGAATGCATTGGGAGA
Right flanking sequence: Indices 130176 -- 130675
GGGGATGAGGGGAATGGGGACAGTAGCCTCTTTTATAGTGTGAAGGGGGGTGGAATGCGGGGTAT
TTGCGGGATTTAATCGTTGTAGACGACTACCAGACGCGTGTTGGGAGGAAAGAGGAGGAATTGAG
GAGGCTGTGTCGTAGACGAGGTTGTCATTGGCAACCGTCAGGATTGGAGTGAAGGTAACGGTTGG
GTGAATGTCACGGCGGGATGTGAGTGCAACGGTTGGTGTGAATGCAACGGTTTCAGTGCATGGAC
CCTGTAGGTGGACTTACTCGTCTCGATAACAGGCTAAACGAACAAGTCCACTGTCACCCAGGGTT
GACATTGAAACCAAGCGCCCGACCGGAGTAGCCAGTGCCTTGTCAAAAACCACTGCCACCAGTCG
TCCACTTTCACCAGTTGTCCACTTTCACCAGTCGTCCACTCGTCACAACGGCATTACCGTTCGTT
CACGTTCGTTCACGTTCGTCCACGTTCGCCACCGATCAAGACCGC
Found at i:130416 original size:18 final size:18
Alignment explanation
Indices: 130362--130422 Score: 63
Period size: 18 Copynumber: 3.4 Consensus size: 18
130352 GAGTGAAGGT
130362 AACGGTTGG-GTGAATGTC
1 AACGGTTGGTGTGAATG-C
** *
130380 -ACGGCGGGATGTGAGTGC
1 AACGGTTGG-TGTGAATGC
130398 AACGGTTGGTGTGAATGC
1 AACGGTTGGTGTGAATGC
130416 AACGGTT
1 AACGGTT
130423 TCAGTGCATG
Statistics
Matches: 34, Mismatches: 6, Indels: 6
0.74 0.13 0.13
Matches are distributed among these distances:
17 6 0.18
18 16 0.47
19 12 0.35
ACGTcount: A:0.21, C:0.13, G:0.41, T:0.25
Consensus pattern (18 bp):
AACGGTTGGTGTGAATGC
Left flanking sequence: Indices 129862 -- 130361
GCTGCACGGGGTCACCGACACAGAGACCGTCACCCAACTCGAACAACTGACAGGTGATGTAGGGC
GAAGACACTCTGATGACCTCGGCAAGCAACCCGATGTGGCCCACCTTGATGACCTCGTGCATCGA
GGCGTTCAACTCGGCAACCACCACCGGCCCGGAAATGGAAAAGATCTTGCCAAAGTCCTTGGCGT
CGGCGTCCACCGACAACTTTTCGAGATCCTTGCGCGCGTTCTCAAGAGCACCAGCCTGGATGTTA
GTATGAATGCATTGGGAGAGTGGAGAATAGGTGTGGAGAATAGATGTGGAGAATGGGGATGAGGG
GAATGGGGACAGTAGCCTCTTTTATAGTGTGAAGGGGGGTGGAATGCGGGGTATTTGCGGGATTT
AATCGTTGTAGACGACTACCAGACGCGTGTTGGGAGGAAAGAGGAGGAATTGAGGAGGCTGTGTC
GTAGACGAGGTTGTCATTGGCAACCGTCAGGATTGGAGTGAAGGT
Right flanking sequence: Indices 130423 -- 130922
TCAGTGCATGGACCCTGTAGGTGGACTTACTCGTCTCGATAACAGGCTAAACGAACAAGTCCACT
GTCACCCAGGGTTGACATTGAAACCAAGCGCCCGACCGGAGTAGCCAGTGCCTTGTCAAAAACCA
CTGCCACCAGTCGTCCACTTTCACCAGTTGTCCACTTTCACCAGTCGTCCACTCGTCACAACGGC
ATTACCGTTCGTTCACGTTCGTTCACGTTCGTCCACGTTCGCCACCGATCAAGACCGCCACTTTT
TGGAATTGAGCGCCACATCACACGACACTCTCTGCATTCTTTCACTCGTTTCTGGTTCTCACGCT
CCTTCGTCCAATCGCCTTCCATCCGCTTCCACTCGTAGCCTCCTCTCCTCCTCGCATGCGTCAGC
CACGCCCTCGTTGCTGGCATTGCTCACCGTCATCCAGAGGCTCCATTTGGTGGTAATGCCCACTC
GGAGATCTCAATTGGCACTGGACCAGTGCTCCACCAATGTCTCAT
Found at i:130577 original size:17 final size:17
Alignment explanation
Indices: 130557--130605 Score: 89
Period size: 17 Copynumber: 2.9 Consensus size: 17
130547 AAACCACTGC
130557 CACCAGTCGTCCACTTT
1 CACCAGTCGTCCACTTT
*
130574 CACCAGTTGTCCACTTT
1 CACCAGTCGTCCACTTT
130591 CACCAGTCGTCCACT
1 CACCAGTCGTCCACT
130606 CGTCACAACG
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 30 1.00
ACGTcount: A:0.18, C:0.41, G:0.12, T:0.29
Consensus pattern (17 bp):
CACCAGTCGTCCACTTT
Left flanking sequence: Indices 130057 -- 130556
CGGCGTCCACCGACAACTTTTCGAGATCCTTGCGCGCGTTCTCAAGAGCACCAGCCTGGATGTTA
GTATGAATGCATTGGGAGAGTGGAGAATAGGTGTGGAGAATAGATGTGGAGAATGGGGATGAGGG
GAATGGGGACAGTAGCCTCTTTTATAGTGTGAAGGGGGGTGGAATGCGGGGTATTTGCGGGATTT
AATCGTTGTAGACGACTACCAGACGCGTGTTGGGAGGAAAGAGGAGGAATTGAGGAGGCTGTGTC
GTAGACGAGGTTGTCATTGGCAACCGTCAGGATTGGAGTGAAGGTAACGGTTGGGTGAATGTCAC
GGCGGGATGTGAGTGCAACGGTTGGTGTGAATGCAACGGTTTCAGTGCATGGACCCTGTAGGTGG
ACTTACTCGTCTCGATAACAGGCTAAACGAACAAGTCCACTGTCACCCAGGGTTGACATTGAAAC
CAAGCGCCCGACCGGAGTAGCCAGTGCCTTGTCAAAAACCACTGC
Right flanking sequence: Indices 130606 -- 131105
CGTCACAACGGCATTACCGTTCGTTCACGTTCGTTCACGTTCGTCCACGTTCGCCACCGATCAAG
ACCGCCACTTTTTGGAATTGAGCGCCACATCACACGACACTCTCTGCATTCTTTCACTCGTTTCT
GGTTCTCACGCTCCTTCGTCCAATCGCCTTCCATCCGCTTCCACTCGTAGCCTCCTCTCCTCCTC
GCATGCGTCAGCCACGCCCTCGTTGCTGGCATTGCTCACCGTCATCCAGAGGCTCCATTTGGTGG
TAATGCCCACTCGGAGATCTCAATTGGCACTGGACCAGTGCTCCACCAATGTCTCATATCTCATT
TGTCCTTGGGACTCGCAGTAACTTACCATAGTGAATACTCGTGTTGACTTGGTTCGCAATTTTGT
TGAGATAACAATTGGCGCGGCGCCCCGTGTGCACGCACGGGGAGAGTGGCGGAGATATGGAGGAT
GGGAACAGTGGAGGGGGCATTGTGGAGGTTGGGCTACTAGTGGAA
Found at i:130638 original size:10 final size:10
Alignment explanation
Indices: 130623--130658 Score: 63
Period size: 10 Copynumber: 3.6 Consensus size: 10
130613 ACGGCATTAC
130623 CGTTCGTTCA
1 CGTTCGTTCA
130633 CGTTCGTTCA
1 CGTTCGTTCA
*
130643 CGTTCGTCCA
1 CGTTCGTTCA
130653 CGTTCG
1 CGTTCG
130659 CCACCGATCA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
10 25 1.00
ACGTcount: A:0.08, C:0.33, G:0.22, T:0.36
Consensus pattern (10 bp):
CGTTCGTTCA
Left flanking sequence: Indices 130123 -- 130622
TATGAATGCATTGGGAGAGTGGAGAATAGGTGTGGAGAATAGATGTGGAGAATGGGGATGAGGGG
AATGGGGACAGTAGCCTCTTTTATAGTGTGAAGGGGGGTGGAATGCGGGGTATTTGCGGGATTTA
ATCGTTGTAGACGACTACCAGACGCGTGTTGGGAGGAAAGAGGAGGAATTGAGGAGGCTGTGTCG
TAGACGAGGTTGTCATTGGCAACCGTCAGGATTGGAGTGAAGGTAACGGTTGGGTGAATGTCACG
GCGGGATGTGAGTGCAACGGTTGGTGTGAATGCAACGGTTTCAGTGCATGGACCCTGTAGGTGGA
CTTACTCGTCTCGATAACAGGCTAAACGAACAAGTCCACTGTCACCCAGGGTTGACATTGAAACC
AAGCGCCCGACCGGAGTAGCCAGTGCCTTGTCAAAAACCACTGCCACCAGTCGTCCACTTTCACC
AGTTGTCCACTTTCACCAGTCGTCCACTCGTCACAACGGCATTAC
Right flanking sequence: Indices 130659 -- 131158
CCACCGATCAAGACCGCCACTTTTTGGAATTGAGCGCCACATCACACGACACTCTCTGCATTCTT
TCACTCGTTTCTGGTTCTCACGCTCCTTCGTCCAATCGCCTTCCATCCGCTTCCACTCGTAGCCT
CCTCTCCTCCTCGCATGCGTCAGCCACGCCCTCGTTGCTGGCATTGCTCACCGTCATCCAGAGGC
TCCATTTGGTGGTAATGCCCACTCGGAGATCTCAATTGGCACTGGACCAGTGCTCCACCAATGTC
TCATATCTCATTTGTCCTTGGGACTCGCAGTAACTTACCATAGTGAATACTCGTGTTGACTTGGT
TCGCAATTTTGTTGAGATAACAATTGGCGCGGCGCCCCGTGTGCACGCACGGGGAGAGTGGCGGA
GATATGGAGGATGGGAACAGTGGAGGGGGCATTGTGGAGGTTGGGCTACTAGTGGAAGCGGTGGG
CTAGTCCAGGTGTTTGAATCGGGCGTTTGCTGACTCGCTTACGTC
Found at i:131679 original size:17 final size:17
Alignment explanation
Indices: 131636--131681 Score: 69
Period size: 15 Copynumber: 2.8 Consensus size: 17
131626 ACAACCCGAG
131636 AACCTTACTTCTCTCTC
1 AACCTTACTTCTCTCTC
*
131653 AACC--ATTTCTCTCTC
1 AACCTTACTTCTCTCTC
131668 AACCTTACTTCTCT
1 AACCTTACTTCTCT
131682 TCCTTCTCTC
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
15 14 0.56
17 11 0.44
ACGTcount: A:0.20, C:0.39, G:0.00, T:0.41
Consensus pattern (17 bp):
AACCTTACTTCTCTCTC
Left flanking sequence: Indices 131136 -- 131635
GCGTTTGCTGACTCGCTTACGTCGACACGTTGTCGCTATGTACTGCAGGTAGTCGCTGTCCTCAT
GGCAAACAGACGAGAGCGAGAGAAGCGAAAGGTGGACGTGGGGTAGAGGGTAGCGGACGAGGGTG
AATGACAGCGAGCTAAGATTAGGCGTAATTACTCTATGGGGAATAGAAGGCGTGGGTGGCCAATG
ATTGAACCCTTCGATGACGTCATTGATTGATTGGACGTCAATTACTGTTAGTACTCTAACCCTTT
ATTAGTCCATTTCTCCCGCGCCAGTTTTTGCCTTGTTCCGTGCGAAAAATGAATTCTTCGTGCGA
GCCTCCACGAAATTCACTGAATTCGCACAAAGCCTTAGGAGAGGACTAAGAATATTTCAACAACG
TTCCACCCTAATGCCTCAATCAACTCATACAGCTAGAATTTATTACTCTACCCGTGATTTCTCTA
CCTTGATTGACACATGCTGTCTCAGTCTGTGTTCTACAACCCGAG
Right flanking sequence: Indices 131682 -- 132181
TCCTTCTCTCTCCATCTATTTCTATATACTTAGATGTTGGCCTTGCCCGCCACCTTCTTGGCCCG
GTCGTAGGCAATGTCACACATGGCATTGAACGCCTCGGCACGCTCCTTTCTCACGTCTCCACGCT
GGATCCGCTCCTCCATCTCCTTCATGATCACCGGTCTCGGGCGCCCGTTGACAAAGCACACGAAC
CGCAACCCGGGGAACTTGTCCTCGTAGGCGTCATTGAGCTTCACCAACTTCTCCGCCTCCTCGGC
CGAGCCCTGCTGCAACAGCTTCTGCTCCGCCAGCGAGTGCTCGGAAAGGTCGGTGGTTCTCACCT
TCGACGAGCCCCCCAATCTCGGGTGGGCCCCGATGATCTCGGCGATCCGCGGGTCGCACTTGCCG
GTTTTGTCCTCGTCCTGCTCGGCCTTCGACAACAACAGTAGCAACGCCAGACGGCACTCCTCGAC
GAACTGCTTGTAGCTACGGGCCGGCCGCGGGCACACCTCGTCGAT
Found at i:131693 original size:13 final size:13
Alignment explanation
Indices: 131643--131693 Score: 50
Period size: 13 Copynumber: 3.8 Consensus size: 13
131633 GAGAACCTTA
131643 CTTCTCTCTCAAC
1 CTTCTCTCTCAAC
131656 CATTTCTCTCTCAAC
1 C--TTCTCTCTCAAC
**
131671 CTTACT-TCTCTTC
1 CTT-CTCTCTCAAC
131684 CTTCTCTCTC
1 CTTCTCTCTC
131694 CATCTATTTC
Statistics
Matches: 32, Mismatches: 2, Indels: 8
0.76 0.05 0.19
Matches are distributed among these distances:
12 2 0.06
13 15 0.47
14 2 0.06
15 13 0.41
ACGTcount: A:0.12, C:0.43, G:0.00, T:0.45
Consensus pattern (13 bp):
CTTCTCTCTCAAC
Left flanking sequence: Indices 131143 -- 131642
CTGACTCGCTTACGTCGACACGTTGTCGCTATGTACTGCAGGTAGTCGCTGTCCTCATGGCAAAC
AGACGAGAGCGAGAGAAGCGAAAGGTGGACGTGGGGTAGAGGGTAGCGGACGAGGGTGAATGACA
GCGAGCTAAGATTAGGCGTAATTACTCTATGGGGAATAGAAGGCGTGGGTGGCCAATGATTGAAC
CCTTCGATGACGTCATTGATTGATTGGACGTCAATTACTGTTAGTACTCTAACCCTTTATTAGTC
CATTTCTCCCGCGCCAGTTTTTGCCTTGTTCCGTGCGAAAAATGAATTCTTCGTGCGAGCCTCCA
CGAAATTCACTGAATTCGCACAAAGCCTTAGGAGAGGACTAAGAATATTTCAACAACGTTCCACC
CTAATGCCTCAATCAACTCATACAGCTAGAATTTATTACTCTACCCGTGATTTCTCTACCTTGAT
TGACACATGCTGTCTCAGTCTGTGTTCTACAACCCGAGAACCTTA
Right flanking sequence: Indices 131694 -- 132193
CATCTATTTCTATATACTTAGATGTTGGCCTTGCCCGCCACCTTCTTGGCCCGGTCGTAGGCAAT
GTCACACATGGCATTGAACGCCTCGGCACGCTCCTTTCTCACGTCTCCACGCTGGATCCGCTCCT
CCATCTCCTTCATGATCACCGGTCTCGGGCGCCCGTTGACAAAGCACACGAACCGCAACCCGGGG
AACTTGTCCTCGTAGGCGTCATTGAGCTTCACCAACTTCTCCGCCTCCTCGGCCGAGCCCTGCTG
CAACAGCTTCTGCTCCGCCAGCGAGTGCTCGGAAAGGTCGGTGGTTCTCACCTTCGACGAGCCCC
CCAATCTCGGGTGGGCCCCGATGATCTCGGCGATCCGCGGGTCGCACTTGCCGGTTTTGTCCTCG
TCCTGCTCGGCCTTCGACAACAACAGTAGCAACGCCAGACGGCACTCCTCGACGAACTGCTTGTA
GCTACGGGCCGGCCGCGGGCACACCTCGTCGATGAGGATGTTGGC
Found at i:133452 original size:44 final size:43
Alignment explanation
Indices: 133401--133506 Score: 115
Period size: 44 Copynumber: 2.4 Consensus size: 43
133391 GTGGCTATTG
* ***
133401 CGTTGGTTGTGTTCAACTCAGTTTTCACGTTTTGGGTGTGGCTA
1 CGTTGGTTGTGTTCAACTCAATTTT-ACGCCCTGGGTGTGGCTA
* * *
133445 CGTTGGTTGTCTTCATTA-ACAATTTTACGCCCTGGTTGTGGCTA
1 CGTTGGTTGTGTTCA--ACTCAATTTTACGCCCTGGGTGTGGCTA
133489 CGTTGGTTGTGTTCAACT
1 CGTTGGTTGTGTTCAACT
133507 TTAACGATGT
Statistics
Matches: 50, Mismatches: 9, Indels: 7
0.76 0.14 0.11
Matches are distributed among these distances:
42 1 0.02
44 42 0.84
45 6 0.12
46 1 0.02
ACGTcount: A:0.13, C:0.18, G:0.26, T:0.42
Consensus pattern (43 bp):
CGTTGGTTGTGTTCAACTCAATTTTACGCCCTGGGTGTGGCTA
Left flanking sequence: Indices 132901 -- 133400
GGTACCAAAATGCTTGGCTCTTCTATCCAACTCCCTGTTGGTTCCCATATACCGGGCATCAACCA
AACACGGTAGCCATCTACCTGGTAGTTTTAGGAATGTCAACTTTAAGAGGTTACACAAACTTCAA
TCCTGGATATTGTTACACTATATAGACTAGCGACTCACAACTAGACTCCATCTAATTCCACAACG
TATTTTGTACCCTTCGATCTGAGTAGGGAATCCCCCATGGATAAGAACGACAAGAAAATCACCAA
CGGTGCCGTTGGCCGTTGGCTTCCGACCCTGAAGTCGGGTAGCAATATCACCCCTTGAAATGCCT
AGTCCAACGGTACCCCAATGTTTGGCACTGTCCCCCCATCGATTGTCATCGACAAATCGTTTGTA
TTCCATGGGAATGTTGCCCAAAGTGGATAGTAAAGGGACGTTTTCAAGTATTTATAGGCCGCTCT
CACCCAAAGAACCCACTCCAACGACGGAGCTGTGGGTGGCTATTG
Right flanking sequence: Indices 133507 -- 134006
TTAACGATGTGGGTGTGGCTATGGTTAAGTTCATTAACACTACAATTTTCACGCTGTGGGTATTT
GTATCTATTTACACTCGCCACGGTCTCGAGTACCAGGCCACTGATGCAATCGTGGTCTCTGAGCC
GAGAAGGAACCCGCTGCCAATGTTCCGGACAACTACTACCTTCACCATCGGCCAAAGGGTACCAT
AGACGTACAAAACCAGCCATCACAAGGAAATGAACTGAGTGCTATCTATTCGTACCACCTGTGAC
GTCATGGTATTTCTACTCATTCGATTCACTAATGAGGATGAAAACAATCGGTACAAAAGGAGACG
TAAAAACCATCACACGGGTATTGCAAATGAACCGAGTGGTATCTAATCATCGGTACCACTTGTGA
CGTCATGGTATTTCTACTCGTTCGAATCACTGATGAGGATGAATACAATCGGTACTACACCAGAC
ACGTACAACCATCGCACGGGCATTAAATCCGAGTGCTATCTTCGT
Found at i:136386 original size:15 final size:15
Alignment explanation
Indices: 136357--136418 Score: 56
Period size: 15 Copynumber: 4.2 Consensus size: 15
136347 AGGAGCACGG
136357 TGGCGGGTT--TGGC
1 TGGCGGGTTGGTGGC
136370 TGGCGGGTTGGTGGC
1 TGGCGGGTTGGTGGC
**
136385 TGGTTGGTTAGGTGGC
1 TGGCGGGTT-GGTGGC
* * *
136401 TGGTGTGATGGTGGC
1 TGGCGGGTTGGTGGC
136416 TGG
1 TGG
136419 TTAGCAGCCT
Statistics
Matches: 41, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
13 9 0.22
15 20 0.49
16 12 0.29
ACGTcount: A:0.03, C:0.10, G:0.55, T:0.32
Consensus pattern (15 bp):
TGGCGGGTTGGTGGC
Left flanking sequence: Indices 135857 -- 136356
GATGGTGGCCAACACCTGGCGGATGGCCGAGCTTCCCTTGAGGGTCTGCTTTACGATGGGTGGGG
TGGGCTCCTCCAGCTGGGTGAACTCGAGCCGGCGGTCGATCTCGAGCCCGAGGATGATCACGTTG
GTGTGGCACTTCCACAACTTGAGCAAGTAGTGGAAGTAGGGGTTGAGGGCCAAGTTGTCGCCAAA
GAGCTTGGCGAGGGCAGCAAGGGCGACACAGCACGCGGAGTACACGAGCCGGAGCTCCAACCCGT
CGACCGCGGGGGTCCACTGGGCCATGGTGTCGTGGTAGCGGGCCTCGGAGTTGTCGACGTAGCGG
AGGGCGAGTTCGTCGGTCACCCGTAATACTCCGTGGATCGCCCGGACCACCCGGTAGAACCCGGC
GGCGAGCTCGAACTTCACCAGCGGCATGTTGGCGAGCGGCAGCGTGTGCTGGAAGCGGGTGTAGG
CGAGGGCGATGGCGACGTCGGCCAACAAGTCCACCAGGAGCACGG
Right flanking sequence: Indices 136419 -- 136918
TTAGCAGCCTGGGCCGGAGGGTGCGGAGGAGGGTGCGGTGCATCGCCTCCGTGGAGGGAGGCCTG
CGGAGGCACCGTCGACGGCTGGGTGTAGGGGTCGCAGAGCGCGACCAACGTGGTGTAGAGGAACA
GCGAGAAGTCGTCGGGGAGGGACACGGCGGCGAGCACCGTGTCGTGGCGCTCGAGCGGCACGTCG
GCTTCCACGCTGTCCATGGTGTGGTGGGTGAGGCGTCGGAGTGGGTGCGTCTTTGGTGAGGTTTT
TTCGGCGATGCCAGCGAGGAGGGGACGGGAGAGAAGGGGGAAGGAGGTGGAAGGGGAGGTGGAAT
GGGTGTGGGGGTTGGTTAGGGGGGTGGCTGGGTGTGTGTGGTTTGGGTGGTGTGATTTTTTTGGG
TCAATTGGAAGGGGGGTGGGTGTGGAGTGGGTGGGTTAGAAATGGAGGTGGTGGATCAGGTCCGA
AAGGAAGTGAGATCGGGTGTGAAGAGGAGTGGGTGAAGGAAGCTG
Found at i:136400 original size:16 final size:15
Alignment explanation
Indices: 136375--136420 Score: 58
Period size: 15 Copynumber: 3.0 Consensus size: 15
136365 TTGGCTGGCG
136375 GGTTGGTGGCTGGTT
1 GGTTGGTGGCTGGTT
136390 GGTTAGGTGGCTGG-T
1 GGTT-GGTGGCTGGTT
*
136405 GTGATGGTGGCTGGTT
1 G-GTTGGTGGCTGGTT
136421 AGCAGCCTGG
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
15 15 0.56
16 12 0.44
ACGTcount: A:0.04, C:0.07, G:0.52, T:0.37
Consensus pattern (15 bp):
GGTTGGTGGCTGGTT
Left flanking sequence: Indices 135875 -- 136374
GCGGATGGCCGAGCTTCCCTTGAGGGTCTGCTTTACGATGGGTGGGGTGGGCTCCTCCAGCTGGG
TGAACTCGAGCCGGCGGTCGATCTCGAGCCCGAGGATGATCACGTTGGTGTGGCACTTCCACAAC
TTGAGCAAGTAGTGGAAGTAGGGGTTGAGGGCCAAGTTGTCGCCAAAGAGCTTGGCGAGGGCAGC
AAGGGCGACACAGCACGCGGAGTACACGAGCCGGAGCTCCAACCCGTCGACCGCGGGGGTCCACT
GGGCCATGGTGTCGTGGTAGCGGGCCTCGGAGTTGTCGACGTAGCGGAGGGCGAGTTCGTCGGTC
ACCCGTAATACTCCGTGGATCGCCCGGACCACCCGGTAGAACCCGGCGGCGAGCTCGAACTTCAC
CAGCGGCATGTTGGCGAGCGGCAGCGTGTGCTGGAAGCGGGTGTAGGCGAGGGCGATGGCGACGT
CGGCCAACAAGTCCACCAGGAGCACGGTGGCGGGTTTGGCTGGCG
Right flanking sequence: Indices 136421 -- 136920
AGCAGCCTGGGCCGGAGGGTGCGGAGGAGGGTGCGGTGCATCGCCTCCGTGGAGGGAGGCCTGCG
GAGGCACCGTCGACGGCTGGGTGTAGGGGTCGCAGAGCGCGACCAACGTGGTGTAGAGGAACAGC
GAGAAGTCGTCGGGGAGGGACACGGCGGCGAGCACCGTGTCGTGGCGCTCGAGCGGCACGTCGGC
TTCCACGCTGTCCATGGTGTGGTGGGTGAGGCGTCGGAGTGGGTGCGTCTTTGGTGAGGTTTTTT
CGGCGATGCCAGCGAGGAGGGGACGGGAGAGAAGGGGGAAGGAGGTGGAAGGGGAGGTGGAATGG
GTGTGGGGGTTGGTTAGGGGGGTGGCTGGGTGTGTGTGGTTTGGGTGGTGTGATTTTTTTGGGTC
AATTGGAAGGGGGGTGGGTGTGGAGTGGGTGGGTTAGAAATGGAGGTGGTGGATCAGGTCCGAAA
GGAAGTGAGATCGGGTGTGAAGAGGAGTGGGTGAAGGAAGCTGAT
Found at i:137025 original size:15 final size:15
Alignment explanation
Indices: 137005--137036 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
136995 AAGGTATGAA
137005 GGGTTCGAAGCCCAG
1 GGGTTCGAAGCCCAG
137020 GGGTTCGAAGCCCAG
1 GGGTTCGAAGCCCAG
137035 GG
1 GG
137037 TTGCTTGGTG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.19, C:0.25, G:0.44, T:0.12
Consensus pattern (15 bp):
GGGTTCGAAGCCCAG
Left flanking sequence: Indices 136505 -- 137004
GGTGTAGGGGTCGCAGAGCGCGACCAACGTGGTGTAGAGGAACAGCGAGAAGTCGTCGGGGAGGG
ACACGGCGGCGAGCACCGTGTCGTGGCGCTCGAGCGGCACGTCGGCTTCCACGCTGTCCATGGTG
TGGTGGGTGAGGCGTCGGAGTGGGTGCGTCTTTGGTGAGGTTTTTTCGGCGATGCCAGCGAGGAG
GGGACGGGAGAGAAGGGGGAAGGAGGTGGAAGGGGAGGTGGAATGGGTGTGGGGGTTGGTTAGGG
GGGTGGCTGGGTGTGTGTGGTTTGGGTGGTGTGATTTTTTTGGGTCAATTGGAAGGGGGGTGGGT
GTGGAGTGGGTGGGTTAGAAATGGAGGTGGTGGATCAGGTCCGAAAGGAAGTGAGATCGGGTGTG
AAGAGGAGTGGGTGAAGGAAGCTGATCTGGTACAACTGGGGGGTTTATGGGGTAGGGTTAAAGGG
GTAGGGTTGGAGACGGGTTGGAGGGTAGGGTTGGAAAGGTATGAA
Right flanking sequence: Indices 137037 -- 137536
TTGCTTGGTGTTGGCTCTCGTACCCGGTTGCATCAACCAAGTACGGTAGCCATCTAACGATGAGG
TAGTGACAGGAATGTAAACTTTATAGATTGCACATATTGCTTGCGGGTTGCACAATCTTCTTTCA
GGTTGCTCAAACTACACTCATGGATGATTTTATACTACAAAAAATAGAGTCTACTGACTATTGGG
ACTCCTATCTAAACCCATAACCGTAACTCATACCCTTCCTCGATCTGAGGAAGAATCCACCATGG
CTAAGATCGTCAAAAAATCGCCAGCGGTGCCTATGGCCCCTTAGCTTCTTACCTAAGTCGGGTCG
CATCAGTTGTTTGTTGAGGATAGCTCTTCTGGTACTGGATTCTAGGTTGTAGTTACTGGGGATTT
GCAGCTAGATGGAACCTTCTCTATCTTATTCTCCATACGCTTGACCATAAAACTGAACAATGCTT
TTAACGCTTCATTTTTACCTACAAAACATATTAGGGAAAGAATGC
Found at i:138347 original size:22 final size:22
Alignment explanation
Indices: 138319--138384 Score: 73
Period size: 22 Copynumber: 3.0 Consensus size: 22
138309 CACTCACACG
138319 ACCCCTGAAACCCTCTCGTCCC
1 ACCCCTGAAACCCTCTCGTCCC
**
138341 ACCCCTGAAA-CCTCGTTCCACCC
1 ACCCCTGAAACCCTC--TCGTCCC
*
138364 A-CCCTAAAACCCTCTCGTCCC
1 ACCCCTGAAACCCTCTCGTCCC
138385 TCCACTCCCT
Statistics
Matches: 36, Mismatches: 5, Indels: 7
0.75 0.10 0.15
Matches are distributed among these distances:
21 9 0.25
22 17 0.47
23 10 0.28
ACGTcount: A:0.21, C:0.53, G:0.08, T:0.18
Consensus pattern (22 bp):
ACCCCTGAAACCCTCTCGTCCC
Left flanking sequence: Indices 137819 -- 138318
GTCAATGGATCACGGAACTGCGTCAGGTGTCTCCTTTCGCTGTTTGAGGTCTATATACTTTGCTG
AGCTAGCTCATTGACCACTCTGGCCCGTTTCTCTGCCATTGGTGGCTCTTTTCCGCGAGGTAGGC
GATCACACGGTGGAGAGTAGCAGCTTCCTGGCCAGTTTCAAGACGGTAAAAGCCAATTGGTCTCG
CTCAAAGACTTCAGGAACCAGCCCTACCTTCGAAAGGGCTACAATGTGGTGGTTATCTCATATCT
TCTAACAGTAAGACAAAACATCAACTAGCCACCTACATCAATCACCATCAAAATAATCTCCCATC
ACCCACCATCACACCTACATCAAACCTCCTATCAATCACCATCAACCAACCCGCTTCCCGTTTCT
TCCCTCGCGACTCCTGTTCTCCCACCACTCCGGAAAGTCGATGCGAGCCCGGGTCGTACCCGGGT
CGGGCTCCGCTGCCAAGAAATAACGCAACGTGCTCCACTCACACG
Right flanking sequence: Indices 138385 -- 138884
TCCACTCCCTAAAACTCCTCGCACGTCTCTCCCCCACTGCCTTATCTATTCCATCAGCTCGTATA
TTACCCGATCGGGAAGCGTTGAAAAACCACTCTAATCATACATTATTCATTACAAAAGCAAGGAC
ACGAGCCCGATCATCGACGCCAAGAACCCGGCCCCGGCCATACCAGCGACGTTGGCAGACTTCTC
GTCCGACTTGGACTCAGACTTAGCATCCGACTTGGCCTCCGACTTAGCGTCCGACTTGCTGGTCT
CCTCCGCGGCCTTGTCCGTCTGGGAGCCCTCCGTAGTGGACTCAGCGTCCTTCTTGTCATCCGTA
GTGGTGGCCAGCGCCTCGGCAACGGCCCCCTTGGCCGCCTGCGACAACACCGTCGACACCAGTGC
GGGCATCATCCAGGTGTTGGCGCCCGCAGACGAGCACAACGACATCGCCAACGACGACGCCTTGA
CGACGTCGTTGGCGTCGTCGCACTTGGCAAAGCACTCGGCCACCA
Found at i:138597 original size:24 final size:24
Alignment explanation
Indices: 138570--138637 Score: 91
Period size: 24 Copynumber: 2.8 Consensus size: 24
138560 GCGACGTTGG
**
138570 CAGACTTCTCGTCCGACTTGGACT
1 CAGACTTAGCGTCCGACTTGGACT
* *
138594 CAGACTTAGCATCCGACTTGGCCT
1 CAGACTTAGCGTCCGACTTGGACT
*
138618 CCGACTTAGCGTCCGACTTG
1 CAGACTTAGCGTCCGACTTG
138638 CTGGTCTCCT
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 38 1.00
ACGTcount: A:0.18, C:0.34, G:0.22, T:0.26
Consensus pattern (24 bp):
CAGACTTAGCGTCCGACTTGGACT
Left flanking sequence: Indices 138070 -- 138569
CTCATATCTTCTAACAGTAAGACAAAACATCAACTAGCCACCTACATCAATCACCATCAAAATAA
TCTCCCATCACCCACCATCACACCTACATCAAACCTCCTATCAATCACCATCAACCAACCCGCTT
CCCGTTTCTTCCCTCGCGACTCCTGTTCTCCCACCACTCCGGAAAGTCGATGCGAGCCCGGGTCG
TACCCGGGTCGGGCTCCGCTGCCAAGAAATAACGCAACGTGCTCCACTCACACGACCCCTGAAAC
CCTCTCGTCCCACCCCTGAAACCTCGTTCCACCCACCCTAAAACCCTCTCGTCCCTCCACTCCCT
AAAACTCCTCGCACGTCTCTCCCCCACTGCCTTATCTATTCCATCAGCTCGTATATTACCCGATC
GGGAAGCGTTGAAAAACCACTCTAATCATACATTATTCATTACAAAAGCAAGGACACGAGCCCGA
TCATCGACGCCAAGAACCCGGCCCCGGCCATACCAGCGACGTTGG
Right flanking sequence: Indices 138638 -- 139137
CTGGTCTCCTCCGCGGCCTTGTCCGTCTGGGAGCCCTCCGTAGTGGACTCAGCGTCCTTCTTGTC
ATCCGTAGTGGTGGCCAGCGCCTCGGCAACGGCCCCCTTGGCCGCCTGCGACAACACCGTCGACA
CCAGTGCGGGCATCATCCAGGTGTTGGCGCCCGCAGACGAGCACAACGACATCGCCAACGACGAC
GCCTTGACGACGTCGTTGGCGTCGTCGCACTTGGCAAAGCACTCGGCCACCAACCCAGACCACTG
GGGCATGACACAGAAGCACCCGGTGTCCCAGTAGGGGCACGGAGTGTTCCCGGTGGACTGCTTCA
CGCATTCCTTGGCACACTCGGGCAATCTGTCAAAAATAGGGTCGGCAAACCCGTTGATGGTGGCG
GTCTTGGGCACCTTGGGGTAGGTGCGGAAGTCGCCGACCTCGAACGAGTCGTCGGCCAGCACGAG
GGCCACAAGGGCAAACAACGGGTAGAGAACTAACATGGCAGTGGT
Found at i:138611 original size:12 final size:12
Alignment explanation
Indices: 138596--138636 Score: 55
Period size: 12 Copynumber: 3.4 Consensus size: 12
138586 CTTGGACTCA
138596 GACTTAGCATCC
1 GACTTAGCATCC
* *
138608 GACTTGGCCTCC
1 GACTTAGCATCC
*
138620 GACTTAGCGTCC
1 GACTTAGCATCC
138632 GACTT
1 GACTT
138637 GCTGGTCTCC
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
12 25 1.00
ACGTcount: A:0.17, C:0.34, G:0.22, T:0.27
Consensus pattern (12 bp):
GACTTAGCATCC
Left flanking sequence: Indices 138096 -- 138595
ACATCAACTAGCCACCTACATCAATCACCATCAAAATAATCTCCCATCACCCACCATCACACCTA
CATCAAACCTCCTATCAATCACCATCAACCAACCCGCTTCCCGTTTCTTCCCTCGCGACTCCTGT
TCTCCCACCACTCCGGAAAGTCGATGCGAGCCCGGGTCGTACCCGGGTCGGGCTCCGCTGCCAAG
AAATAACGCAACGTGCTCCACTCACACGACCCCTGAAACCCTCTCGTCCCACCCCTGAAACCTCG
TTCCACCCACCCTAAAACCCTCTCGTCCCTCCACTCCCTAAAACTCCTCGCACGTCTCTCCCCCA
CTGCCTTATCTATTCCATCAGCTCGTATATTACCCGATCGGGAAGCGTTGAAAAACCACTCTAAT
CATACATTATTCATTACAAAAGCAAGGACACGAGCCCGATCATCGACGCCAAGAACCCGGCCCCG
GCCATACCAGCGACGTTGGCAGACTTCTCGTCCGACTTGGACTCA
Right flanking sequence: Indices 138637 -- 139136
GCTGGTCTCCTCCGCGGCCTTGTCCGTCTGGGAGCCCTCCGTAGTGGACTCAGCGTCCTTCTTGT
CATCCGTAGTGGTGGCCAGCGCCTCGGCAACGGCCCCCTTGGCCGCCTGCGACAACACCGTCGAC
ACCAGTGCGGGCATCATCCAGGTGTTGGCGCCCGCAGACGAGCACAACGACATCGCCAACGACGA
CGCCTTGACGACGTCGTTGGCGTCGTCGCACTTGGCAAAGCACTCGGCCACCAACCCAGACCACT
GGGGCATGACACAGAAGCACCCGGTGTCCCAGTAGGGGCACGGAGTGTTCCCGGTGGACTGCTTC
ACGCATTCCTTGGCACACTCGGGCAATCTGTCAAAAATAGGGTCGGCAAACCCGTTGATGGTGGC
GGTCTTGGGCACCTTGGGGTAGGTGCGGAAGTCGCCGACCTCGAACGAGTCGTCGGCCAGCACGA
GGGCCACAAGGGCAAACAACGGGTAGAGAACTAACATGGCAGTGG
Done.