Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: scaffold19
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 269723
ACGTcount: A:0.22, C:0.28, G:0.27, T:0.23
Warning! 1 characters in sequence are not A, C, G, or T
Found at i:2922 original size:10 final size:10
Alignment explanation
Indices: 2904--2933 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
2894 ATAGTCAATA
2904 AAAACACATC
1 AAAACACATC
*
2914 AAAATACATC
1 AAAACACATC
2924 AAAACACATC
1 AAAACACATC
2934 GTATTTCGGT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.60, C:0.27, G:0.00, T:0.13
Consensus pattern (10 bp):
AAAACACATC
Left flanking sequence: Indices 2404 -- 2903
TTTTCGCATAGTTTGCGGTGTGACGAAGAATTTCCGACACTGATAAAGAATGAAGATTAGCTAAT
GATCACAAGGATGACCATTGTCCTTGAATCCTGTTTCGGTAACTAATCAGTTTTCCTAACCCCGT
AAATTAGTTTAATTTCACCAAATTCCCCGCCTACTCATTGTCGCGTCCCAATATGGTAATTCGCA
ACCACTTTGAACCAATACTCTACACGAGCATTACCTGCATTGTCACAGCTAAAATCAGTAAGTTT
ACAGAGTATTATATCCACAAGTCAGGTATAAATACGACTCTAGCTTCTCGCATGTTACTCATCAT
CAATCTCATCAATCATGGCCGCTCAGAACACTCGCACTAACAAAAAGTCTGGCAAGGACGGTAAG
GACAACTACGACATCTCGGAATTTTACGCCGCTATGGTATGTGTAATTGTCTAGATACGGAGACT
TTGCCGTGCCTTGCTTCCCATTGGAGCTACTCTTTATAGTCAATA
Right flanking sequence: Indices 2934 -- 3433
GTATTTCGGTTGATATAATTACTATGATGGATCTCAAAACCCAAAATGTTGAGGTCGGGTTACTT
TGTTAACTCAGAGCGCTTGTCGAGGTAACATTCCCCTTTCCACCGTGAGGTTGAGTGCAATTTGT
GTGCTACTCTCTCGGAACTATGAAACCTAGAGAAGTAGAGAAAGTCACACGATTCTAAAAGCCAG
ACTTTGCCAAATTCGAGTTTTCTCTAGTCAGGTGTGTCCAGCTATTGTGGTCGCTCGATTTGGAA
ACTGGTCGTATGAGAATTCATACTTCCCACCTGACGAGCATTGCCGACTCTTGAAAAGGTAAATA
AATCTCTATCGCAAACCCACAGTTCGTGTATAAATACCACTTTATCTATCACAATCCTCATTAAA
ACATCTCAACCATGGCTGCTCAAAACACTCGCTCTAACAAGTCTTCCAAGTCCTCCAAGGATGGT
AAGGACAACTACGACATTTCGGAGTTCTACGCCGCGATGGTCTGC
Found at i:4670 original size:35 final size:35
Alignment explanation
Indices: 4620--4709 Score: 110
Period size: 36 Copynumber: 2.5 Consensus size: 35
4610 TAGTCAATAA
* *
4620 AACAAAAATCCCAAACTTCGTTGT-TTCTAGTCAAC
1 AACAAAAA-CCCAAACTTCCTTATCTTCTAGTCAAC
* *
4655 AACCAAAAACCCAAACTTCCTTATCCTTCTAGTTAAT
1 AA-CAAAAACCCAAACTTCCTTAT-CTTCTAGTCAAC
4692 AACAAAAACCCAAACTTC
1 AACAAAAACCCAAACTTC
4710 TTAAAAATCC
Statistics
Matches: 48, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
35 15 0.31
36 22 0.46
37 11 0.23
ACGTcount: A:0.41, C:0.29, G:0.04, T:0.26
Consensus pattern (35 bp):
AACAAAAACCCAAACTTCCTTATCTTCTAGTCAAC
Left flanking sequence: Indices 4120 -- 4619
CCCGATATGTCTAAGCATTCTATTCAAGCAGGTGATTAGTCCCACCGAATCTTCCTCTGAGATTA
CACCAAACAGGTGTAGAATATATGCGGGTGCTTGAAGTGACGTAGAATAAAATGTGTACCATGCT
AGGAAGTAACTCAATCGTGAGCTATAGCACCCCCATCACTAGGCTCGACTTTACCTGATGGAGGA
GAGTGTGACCCATCATCTTCTTATTGTCGTGGCCGTAGAAAGTAAGCTCATTTTGATGTATGTTT
CAACACGACCTTGCCAACCCCATTGCGAACTCCGAATCAGGCAAATAACCTACCCACATATCGGG
TATAAATACCACTCTATCTATCACAATCCTCATTAAAACATCAATCATGGCTGCTCAAAACACTC
GCTCTAACAAGTCTTCCAAGTCCTCCAAGGACGGCAAGGACAACTACGACATCTCGGAGTTCTAC
GCCGCGATGGTCTGCGTCATTGTCTAGTCGCTTTATAGTCAATAA
Right flanking sequence: Indices 4710 -- 5209
TTAAAAATCCTTTCTAAAAAACCTTCTTGTCTCTTTATTCTAATATTTACCAGTCGTCATCGTCG
TCATCGTCGTCGTCCAGGTCTCCCGTGGCGCCCTGGCGTTTCTTCAACGCGTTAGCAAGTGACCC
GGCAAGCGAAACCTCCTCCTGCTTCTTCTGCTTGAGCGCATCCGCCAACCCACCCGAGAGCGACG
TTTGCGCCGTCAGCTGCGTCACCTGGGACACCGGCAGCTGCGACTGCGACGGGGGAGCCGGCGCC
AGCGCGCCCGTGACCTCCTGGAGGTAGTTGAGCGGGGCCCACCCCTCGCGCGACTCGTCCAACGG
CTTGGTGAGGCCCCAGGGGCCGTTGGTCTGGGTCACGTAGTAGGTGGTGTCCTTGACAAGCGGCA
ACGACCCCGCCACCGACCCGTCGTAGTCGAAGAGCGCCACGTACTGCGGGTGCTTGGGCTTGGCC
GCAGGCGGCGGCGGCGGCGGAGCGTGGTGCTGAGCAGGCTGCGAC
Found at i:5242 original size:12 final size:12
Alignment explanation
Indices: 5225--5250 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
5215 CGGTTGCGAT
5225 TGCTGAGCCGAG
1 TGCTGAGCCGAG
5237 TGCTGAGCCGAG
1 TGCTGAGCCGAG
5249 TG
1 TG
5251 GGCCGGCTGG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.15, C:0.23, G:0.42, T:0.19
Consensus pattern (12 bp):
TGCTGAGCCGAG
Left flanking sequence: Indices 4725 -- 5224
AAAAAACCTTCTTGTCTCTTTATTCTAATATTTACCAGTCGTCATCGTCGTCATCGTCGTCGTCC
AGGTCTCCCGTGGCGCCCTGGCGTTTCTTCAACGCGTTAGCAAGTGACCCGGCAAGCGAAACCTC
CTCCTGCTTCTTCTGCTTGAGCGCATCCGCCAACCCACCCGAGAGCGACGTTTGCGCCGTCAGCT
GCGTCACCTGGGACACCGGCAGCTGCGACTGCGACGGGGGAGCCGGCGCCAGCGCGCCCGTGACC
TCCTGGAGGTAGTTGAGCGGGGCCCACCCCTCGCGCGACTCGTCCAACGGCTTGGTGAGGCCCCA
GGGGCCGTTGGTCTGGGTCACGTAGTAGGTGGTGTCCTTGACAAGCGGCAACGACCCCGCCACCG
ACCCGTCGTAGTCGAAGAGCGCCACGTACTGCGGGTGCTTGGGCTTGGCCGCAGGCGGCGGCGGC
GGCGGAGCGTGGTGCTGAGCAGGCTGCGACTGGGCCGGTTGCGAT
Right flanking sequence: Indices 5251 -- 5750
GGCCGGCTGGGCCAGCTGAGCGTGCTGTCCCTGGCTCGACAACGAGGCAGGCGGCTTCGGAGGGT
GTTTCTTCTTCACCGGAGGCGGCGGAGCCTTCTTGTGCTTCGGCAGCGTGGGCGACGTGGGCCGG
TTGCCCATGGCCGCCGCGGCCGCGGCCGCAGCCGGGTTGGGGGGCGGTGGCTTGCGCACCCCGTG
GGCTGGCGTGGCATGCTGCATCTCGCTCGGGTGCGGGATGGCCAGCCGCTGCGGGTACGCCGGTT
GCTGAGCCTGGCGCGCTGGGTCCTGGGTCTGGTAGCCCGTCTGGTGCCCTGGGTCCTGGGTCTGG
TAGCTCGCCTGCTGCGCTGGGTCCTGGGTCTGGTAGCCCGGGATCGCCTGCTGCGCGTACCCGTG
CGACGCCTGCAGTCTCACCGGGGTCGGGTGGGTCACCGGTCTCAGGTTGCCAAACCGGTTGTAGT
ACTTCAGGTAGTCCACCGGCTGCGACTTGCCGCGCGGGCGCTTCG
Found at i:5563 original size:33 final size:33
Alignment explanation
Indices: 5526--5615 Score: 144
Period size: 33 Copynumber: 2.7 Consensus size: 33
5516 GCCTGGCGCG
* *
5526 CTGGGTCCTGGGTCTGGTAGCCCGTCTGGTGCC
1 CTGGGTCCTGGGTCTGGTAGCCCGCCTGCTGCC
* *
5559 CTGGGTCCTGGGTCTGGTAGCTCGCCTGCTGCG
1 CTGGGTCCTGGGTCTGGTAGCCCGCCTGCTGCC
5592 CTGGGTCCTGGGTCTGGTAGCCCG
1 CTGGGTCCTGGGTCTGGTAGCCCG
5616 GGATCGCCTG
Statistics
Matches: 52, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 52 1.00
ACGTcount: A:0.03, C:0.30, G:0.40, T:0.27
Consensus pattern (33 bp):
CTGGGTCCTGGGTCTGGTAGCCCGCCTGCTGCC
Left flanking sequence: Indices 5026 -- 5525
GTCCAACGGCTTGGTGAGGCCCCAGGGGCCGTTGGTCTGGGTCACGTAGTAGGTGGTGTCCTTGA
CAAGCGGCAACGACCCCGCCACCGACCCGTCGTAGTCGAAGAGCGCCACGTACTGCGGGTGCTTG
GGCTTGGCCGCAGGCGGCGGCGGCGGCGGAGCGTGGTGCTGAGCAGGCTGCGACTGGGCCGGTTG
CGATTGCTGAGCCGAGTGCTGAGCCGAGTGGGCCGGCTGGGCCAGCTGAGCGTGCTGTCCCTGGC
TCGACAACGAGGCAGGCGGCTTCGGAGGGTGTTTCTTCTTCACCGGAGGCGGCGGAGCCTTCTTG
TGCTTCGGCAGCGTGGGCGACGTGGGCCGGTTGCCCATGGCCGCCGCGGCCGCGGCCGCAGCCGG
GTTGGGGGGCGGTGGCTTGCGCACCCCGTGGGCTGGCGTGGCATGCTGCATCTCGCTCGGGTGCG
GGATGGCCAGCCGCTGCGGGTACGCCGGTTGCTGAGCCTGGCGCG
Right flanking sequence: Indices 5616 -- 6115
GGATCGCCTGCTGCGCGTACCCGTGCGACGCCTGCAGTCTCACCGGGGTCGGGTGGGTCACCGGT
CTCAGGTTGCCAAACCGGTTGTAGTACTTCAGGTAGTCCACCGGCTGCGACTTGCCGCGCGGGCG
CTTCGGGTTGCGCGAGTTGGGCGGCATCCCGGGAAGCACGTGCACCGTGGCCAGCTTGTAGTAGT
CGCCGTTGGCCGGGATCTCTGGCCCCTGGCCCAGCATGAACTTGACCGTCTGGTACTTGCCCTGC
TTCTTCTGGTACTGCACCGTGGGCCCGATCTTGATGTCGAGGCCCGGGTTCAACCGCTTCAACTG
CGCCATGAGCTCGGTCTTGAACACGGTGTTGATGAACACGTCGGGCGACGTCGCGGTGAACGTGC
GGTTGGAGAGCGCGATCCAGTTGTCCTGGAACGTCAGCAACGCCACGTACGCCAACCCGCCCACC
GGAAGCGAAAACTCCTTCTGGAGCCGCAACCGGCCCTCCACCGCC
Found at i:5626 original size:39 final size:36
Alignment explanation
Indices: 5523--5631 Score: 131
Period size: 33 Copynumber: 3.1 Consensus size: 36
5513 TGAGCCTGGC
*
5523 GCGCTGGGTCCTGGGTCTGGTAGCCCGT---CTGGT
1 GCGCTGGGTCCTGGGTCTGGTAGCCCGTCGCCTGCT
*
5556 GCCCTGGGTCCTGGGTCTGGTAG--C-TCGCCTGCT
1 GCGCTGGGTCCTGGGTCTGGTAGCCCGTCGCCTGCT
5589 GCGCTGGGTCCTGGGTCTGGTAGCCCGGGATCGCCTGCT
1 GCGCTGGGTCCTGGGTCTGGTAGCCC--G-TCGCCTGCT
5628 GCGC
1 GCGC
5632 GTACCCGTGC
Statistics
Matches: 64, Mismatches: 3, Indels: 12
0.81 0.04 0.15
Matches are distributed among these distances:
30 1 0.02
31 1 0.02
33 48 0.75
35 1 0.02
39 13 0.20
ACGTcount: A:0.04, C:0.31, G:0.40, T:0.25
Consensus pattern (36 bp):
GCGCTGGGTCCTGGGTCTGGTAGCCCGTCGCCTGCT
Left flanking sequence: Indices 5023 -- 5522
CTCGTCCAACGGCTTGGTGAGGCCCCAGGGGCCGTTGGTCTGGGTCACGTAGTAGGTGGTGTCCT
TGACAAGCGGCAACGACCCCGCCACCGACCCGTCGTAGTCGAAGAGCGCCACGTACTGCGGGTGC
TTGGGCTTGGCCGCAGGCGGCGGCGGCGGCGGAGCGTGGTGCTGAGCAGGCTGCGACTGGGCCGG
TTGCGATTGCTGAGCCGAGTGCTGAGCCGAGTGGGCCGGCTGGGCCAGCTGAGCGTGCTGTCCCT
GGCTCGACAACGAGGCAGGCGGCTTCGGAGGGTGTTTCTTCTTCACCGGAGGCGGCGGAGCCTTC
TTGTGCTTCGGCAGCGTGGGCGACGTGGGCCGGTTGCCCATGGCCGCCGCGGCCGCGGCCGCAGC
CGGGTTGGGGGGCGGTGGCTTGCGCACCCCGTGGGCTGGCGTGGCATGCTGCATCTCGCTCGGGT
GCGGGATGGCCAGCCGCTGCGGGTACGCCGGTTGCTGAGCCTGGC
Right flanking sequence: Indices 5632 -- 6131
GTACCCGTGCGACGCCTGCAGTCTCACCGGGGTCGGGTGGGTCACCGGTCTCAGGTTGCCAAACC
GGTTGTAGTACTTCAGGTAGTCCACCGGCTGCGACTTGCCGCGCGGGCGCTTCGGGTTGCGCGAG
TTGGGCGGCATCCCGGGAAGCACGTGCACCGTGGCCAGCTTGTAGTAGTCGCCGTTGGCCGGGAT
CTCTGGCCCCTGGCCCAGCATGAACTTGACCGTCTGGTACTTGCCCTGCTTCTTCTGGTACTGCA
CCGTGGGCCCGATCTTGATGTCGAGGCCCGGGTTCAACCGCTTCAACTGCGCCATGAGCTCGGTC
TTGAACACGGTGTTGATGAACACGTCGGGCGACGTCGCGGTGAACGTGCGGTTGGAGAGCGCGAT
CCAGTTGTCCTGGAACGTCAGCAACGCCACGTACGCCAACCCGCCCACCGGAAGCGAAAACTCCT
TCTGGAGCCGCAACCGGCCCTCCACCGCCACCTCGGCCACGGTGA
Found at i:8783 original size:13 final size:13
Alignment explanation
Indices: 8765--8789 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
8755 GTAGGTGGGC
8765 GGTGGGGTGGAGA
1 GGTGGGGTGGAGA
8778 GGTGGGGTGGAG
1 GGTGGGGTGGAG
8790 GGGTATGGTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.12, C:0.00, G:0.72, T:0.16
Consensus pattern (13 bp):
GGTGGGGTGGAGA
Left flanking sequence: Indices 8265 -- 8764
CGGCCTCGGTCTTGCCGGCGCCGGACTCGCCGGAGATGATGACACACTGGTTGTCGCCGTACAGC
TTCAACGCGTAGAACATCGCCTCGGCAATGGCAAACACGTGCGGCGGCACCTCCAACCGGTTGCG
GCCCTTGTACAGCTGCAACACCTGGTCGGTGTAGATGCCGAGGTCCTCGAACGGGTTGACGGAGA
TGAGCACGTGGCCGATGTAGGTGTAGATGGTGCCGTTCATGAACCGTTTGTGCAAGTTGTCGTTG
ATGGCGTCGTCGGAGATCGTCAGCAAGAGGGTCAAGTCCAGCACCCCGACCTCTTTCTTCTTGTG
CAAGTCGAACTCGGCCTTCTTGATGCCCAGCTTGGGCGGCGCCGCCTGGGTGCGGGCCTTGTTTC
TCACTCCCCGCTTGACAATCGCCATGGTGGGTTCGTTGCTGGAGGCGATTTGTGGCCGTCGGAAG
AATGAGGGTGTGGGTTGTGTGCAGGAGGGTGGATGGTAGGTGGGC
Right flanking sequence: Indices 8790 -- 9289
GGGTATGGTGGATGGGTGTGGAGGGGTTGGGGTGGGGTGGGTGTGGGTGGGTGTGGGATAGATGT
GTGATGGGGTCTGTTGGTGTTTTTGGTGGCTCTAGTGGCGGATGGCGTGGGTCTACTGGTTGTCT
GGTTGGTGGTGGTAGATAGCGCGATAAGGCACGGGAATGTAGGAGAGAGAGGAGAGGAGGGAGGA
GATGGAGGAGCCAGTAGGAAGGGGCAAGTAGGAAGGAGAGAAAGGAAGATGGTAGTAGTATGAGA
ACGGGCTTGGCTGTTGAAAGTCTCTTCTCTGATCCGGATCATCGCTGTCGGCTGCTGTCGGCCAG
CCACGGCAAGCAGAGATCGGAGTTGCTTAGTGGGGCCAGGAAAAGCGGGAAAGGGGAATTGACCA
ACAGACGCTGTTTAAAAGGTATCCCCGTGTGTCCTTGCCCTCCACCGACCCTTGACGACCGGTTT
CAACCCTCCTTCGCCCGTCTCTCCTTCACCTAGCCTGCTGGCTGA
Found at i:9541 original size:12 final size:12
Alignment explanation
Indices: 9524--9553 Score: 60
Period size: 12 Copynumber: 2.5 Consensus size: 12
9514 GAAACGGAAC
9524 TCTCGCACGACG
1 TCTCGCACGACG
9536 TCTCGCACGACG
1 TCTCGCACGACG
9548 TCTCGC
1 TCTCGC
9554 TACAGTAGCG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.13, C:0.43, G:0.23, T:0.20
Consensus pattern (12 bp):
TCTCGCACGACG
Left flanking sequence: Indices 9024 -- 9523
GAAAGGAAGATGGTAGTAGTATGAGAACGGGCTTGGCTGTTGAAAGTCTCTTCTCTGATCCGGAT
CATCGCTGTCGGCTGCTGTCGGCCAGCCACGGCAAGCAGAGATCGGAGTTGCTTAGTGGGGCCAG
GAAAAGCGGGAAAGGGGAATTGACCAACAGACGCTGTTTAAAAGGTATCCCCGTGTGTCCTTGCC
CTCCACCGACCCTTGACGACCGGTTTCAACCCTCCTTCGCCCGTCTCTCCTTCACCTAGCCTGCT
GGCTGAAATATCGGGGCTCCCAACCAGGGCTGTGTTGCTGGACAAGTGACACTTGCGCCCCGTCC
CAGGTGGCTGCCGCCGGTGGCAAAGCCGTGCCAAGAACGGTGGCAGTGCCGGGCTGTGTCGTGCC
GCCCCTCTACTGCCCTGCTTCCCGTTCGGGACATGCAGTTAAATGGCTCACATCCGGATCGGATC
TACGTAGCCTAAATTAGACCATGAAAAAAGGCTAAGAAACGGAAC
Right flanking sequence: Indices 9554 -- 10053
TACAGTAGCGAGAGCACGACGATCTACATTTACGAGGAGTACACCGAGTAGCTCAAGAATCTGTA
CCTATTAATACCTCTATCAAAACCTAGCACACAGCTCTAACCAAGATCAGGATCACTAGCTCTAT
CTCTTGCTAACCACGATCTCAGCACACAGCTCTTACCAGGATCACGATCATCAGCTCTATCCTCT
TGCTACCACCATCTCGTCGCCCTCACCTTGCCTTAATGCGTCCAGATCCGGACCATCTTGTCCTT
CCCGCCCAGACCGACCCGGTTGCCGTCCACAGACCAGTCCACGGCAAACACCTCGTCCACATGCC
CGGGCAAGTCCACCTTGAGCTTGCGGGTGCGCACATCCCACACCTTGAGCGTGGTGTCCTTCAGA
CACGACACAAGCAACCGGTTGTCCAGCGACCATGCGGTCTGGTACACGGGCGCAACGTGGCCCCG
GAGAGTGCCGATAAACGTGCCTTTCAACCCGTCCCAGATCTTGAT
Found at i:9740 original size:60 final size:60
Alignment explanation
Indices: 9644--9763 Score: 172
Period size: 60 Copynumber: 2.0 Consensus size: 60
9634 ATCAAAACCT
* *
9644 AGCACACAGCTCTAACCAAGATCAGGATCACTAGCTCTAT-CTCTTGCTAACCACGATCTC
1 AGCACACAGCTCTAACCAAGATCACGATCACTAGCTCTATCCTCTTGCT-ACCACCATCTC
* *
9704 AGCACACAGCTCTTACCAGGATCACGATCA-TCAGCTCTATCCTCTTGCTACCACCATCTC
1 AGCACACAGCTCTAACCAAGATCACGATCACT-AGCTCTATCCTCTTGCTACCACCATCTC
9764 GTCGCCCTCA
Statistics
Matches: 54, Mismatches: 4, Indels: 4
0.87 0.06 0.06
Matches are distributed among these distances:
59 1 0.02
60 45 0.83
61 8 0.15
ACGTcount: A:0.28, C:0.36, G:0.12, T:0.24
Consensus pattern (60 bp):
AGCACACAGCTCTAACCAAGATCACGATCACTAGCTCTATCCTCTTGCTACCACCATCTC
Left flanking sequence: Indices 9144 -- 9643
GTGGGGCCAGGAAAAGCGGGAAAGGGGAATTGACCAACAGACGCTGTTTAAAAGGTATCCCCGTG
TGTCCTTGCCCTCCACCGACCCTTGACGACCGGTTTCAACCCTCCTTCGCCCGTCTCTCCTTCAC
CTAGCCTGCTGGCTGAAATATCGGGGCTCCCAACCAGGGCTGTGTTGCTGGACAAGTGACACTTG
CGCCCCGTCCCAGGTGGCTGCCGCCGGTGGCAAAGCCGTGCCAAGAACGGTGGCAGTGCCGGGCT
GTGTCGTGCCGCCCCTCTACTGCCCTGCTTCCCGTTCGGGACATGCAGTTAAATGGCTCACATCC
GGATCGGATCTACGTAGCCTAAATTAGACCATGAAAAAAGGCTAAGAAACGGAACTCTCGCACGA
CGTCTCGCACGACGTCTCGCTACAGTAGCGAGAGCACGACGATCTACATTTACGAGGAGTACACC
GAGTAGCTCAAGAATCTGTACCTATTAATACCTCTATCAAAACCT
Right flanking sequence: Indices 9764 -- 10263
GTCGCCCTCACCTTGCCTTAATGCGTCCAGATCCGGACCATCTTGTCCTTCCCGCCCAGACCGAC
CCGGTTGCCGTCCACAGACCAGTCCACGGCAAACACCTCGTCCACATGCCCGGGCAAGTCCACCT
TGAGCTTGCGGGTGCGCACATCCCACACCTTGAGCGTGGTGTCCTTCAGACACGACACAAGCAAC
CGGTTGTCCAGCGACCATGCGGTCTGGTACACGGGCGCAACGTGGCCCCGGAGAGTGCCGATAAA
CGTGCCTTTCAACCCGTCCCAGATCTTGATCGAGTTGTCAAACGACGCCAGCACGACGTGGCGCC
CGTCGGGCGCAAACAGCACGTGGTTGACAAGCTTCTGGTGGCCCGTCATCCGAGTCACGGGCTTC
AGCAGCTTAAGCGGCTCCCAGAAGTACATGGTGAAGTCGTCCAGGGCCAGCACCAACCGCTCGGA
CCGCTTGCCAGCCACCATCACCGCCTTTTCGTAGTGCTCCTTGGC
Found at i:11770 original size:30 final size:30
Alignment explanation
Indices: 11722--11810 Score: 106
Period size: 30 Copynumber: 3.0 Consensus size: 30
11712 GATGGTCATT
* * * *
11722 TCTGGCCCCTCTGCCTCTGGCTCGTCTGCC
1 TCTGGCTCTTCTGCCTCTGGCTCTTCTGTC
* *
11752 TCTGGCTCTTCTGTCTCTGGCTCTTCTGCC
1 TCTGGCTCTTCTGCCTCTGGCTCTTCTGTC
* *
11782 TCTGGCTCTTCTGTCTCTAGCTCTTCTGT
1 TCTGGCTCTTCTGCCTCTGGCTCTTCTGT
11811 GGCCTCTGTC
Statistics
Matches: 53, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 53 1.00
ACGTcount: A:0.01, C:0.38, G:0.20, T:0.40
Consensus pattern (30 bp):
TCTGGCTCTTCTGCCTCTGGCTCTTCTGTC
Left flanking sequence: Indices 11222 -- 11721
AACTTGATGAGCACATTGGGGAGGTCCTCAGGGACGAGGTCGACCTCGCGGACCTGCTGAGCCTC
CTTCTTCTGGCGCTTGGAGAGGGGGGGTACAACAGTGGCCATGGTGAGATGAGATGAGTTCCCCG
ATCGTATCTATGCGATGGATTATGTAAGCAAGCCATACCGTAGGATCGAGTAGAGAGAAGATGTA
GGAGCAATTGGGACGGAGTGGGATGAATGTATATATGTATATGGTAGCTGGGGGTCGATTAAACC
ATGGTATGCTTCGGTGTTGTCTATGCTAGTGAGGGGGGGAGCCGGATGGTGACAATCCCGTTGTC
GTAGCTCACGCTGGTGGTGCTGCTGAGCTCCATCGTCGACTCCAGGTCCTCGATGGCAGTGAGCT
CAGACTCGGTTTCTGAGGGGTCTTGTGCTGGGTCGTTAGGAATTTCCAGGGCATTAAGCGCCTCT
GTGGGCTCTTCGGTGTCCGCTTCTATGTGATCATCGATGGTCATT
Right flanking sequence: Indices 11811 -- 12310
GGCCTCTGTCTCATCTGTGGCTTCTGGCTCTTCTGTGATGTCTTCGTGCTCCATGAGAGAGCTCC
CTCGTAGTGGGACCACCGAGAACTGACACGCCCCCTCAGATTCAATGTCAAAGTAAACCACCTTG
CTTGTGTTTTTGCTCTCCACACGCAAACCGTACACGAGCGCCAACTCCGTATGGCTGATCCGACT
CTTGTAGACCCCCTCCTCGGCAAACCGGGGTGTCTTCTGGAGCCAGTCCCGGTAAAACACGAACC
GCTGCGCGATGTAGTCGTTACAGATCTCGCTGGGCACAAGCATCATCCGCGTAGGCGCCCGTGAC
AGGTCCCGTGGGTCGCGAGGAGCCTGGGAGCTGGTCATGGGCACAGGCCACGGCTCAAGCTGGCG
GAAACGGGTGTTCAAACACCCCATGAGGCACACCATCGCCGTGTGGGACGTACACAACTGGGACA
TCGTCGTCAAGAGCAGCAGCACGTGGCTGTCGAACTTGGACACCG
Found at i:11786 original size:45 final size:45
Alignment explanation
Indices: 11722--11810 Score: 133
Period size: 45 Copynumber: 2.0 Consensus size: 45
11712 GATGGTCATT
*
11722 TCTGGCCCCTCTGCCTCTGGCTCGTCTGCCTCTGGCTCTTCTGTC
1 TCTGGCCCCTCTGCCTCTGGCTCGTCTGCCTCTAGCTCTTCTGTC
* * * *
11767 TCTGGCTCTTCTGCCTCTGGCTCTTCTGTCTCTAGCTCTTCTGT
1 TCTGGCCCCTCTGCCTCTGGCTCGTCTGCCTCTAGCTCTTCTGT
11811 GGCCTCTGTC
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
45 39 1.00
ACGTcount: A:0.01, C:0.38, G:0.20, T:0.40
Consensus pattern (45 bp):
TCTGGCCCCTCTGCCTCTGGCTCGTCTGCCTCTAGCTCTTCTGTC
Left flanking sequence: Indices 11222 -- 11721
AACTTGATGAGCACATTGGGGAGGTCCTCAGGGACGAGGTCGACCTCGCGGACCTGCTGAGCCTC
CTTCTTCTGGCGCTTGGAGAGGGGGGGTACAACAGTGGCCATGGTGAGATGAGATGAGTTCCCCG
ATCGTATCTATGCGATGGATTATGTAAGCAAGCCATACCGTAGGATCGAGTAGAGAGAAGATGTA
GGAGCAATTGGGACGGAGTGGGATGAATGTATATATGTATATGGTAGCTGGGGGTCGATTAAACC
ATGGTATGCTTCGGTGTTGTCTATGCTAGTGAGGGGGGGAGCCGGATGGTGACAATCCCGTTGTC
GTAGCTCACGCTGGTGGTGCTGCTGAGCTCCATCGTCGACTCCAGGTCCTCGATGGCAGTGAGCT
CAGACTCGGTTTCTGAGGGGTCTTGTGCTGGGTCGTTAGGAATTTCCAGGGCATTAAGCGCCTCT
GTGGGCTCTTCGGTGTCCGCTTCTATGTGATCATCGATGGTCATT
Right flanking sequence: Indices 11811 -- 12310
GGCCTCTGTCTCATCTGTGGCTTCTGGCTCTTCTGTGATGTCTTCGTGCTCCATGAGAGAGCTCC
CTCGTAGTGGGACCACCGAGAACTGACACGCCCCCTCAGATTCAATGTCAAAGTAAACCACCTTG
CTTGTGTTTTTGCTCTCCACACGCAAACCGTACACGAGCGCCAACTCCGTATGGCTGATCCGACT
CTTGTAGACCCCCTCCTCGGCAAACCGGGGTGTCTTCTGGAGCCAGTCCCGGTAAAACACGAACC
GCTGCGCGATGTAGTCGTTACAGATCTCGCTGGGCACAAGCATCATCCGCGTAGGCGCCCGTGAC
AGGTCCCGTGGGTCGCGAGGAGCCTGGGAGCTGGTCATGGGCACAGGCCACGGCTCAAGCTGGCG
GAAACGGGTGTTCAAACACCCCATGAGGCACACCATCGCCGTGTGGGACGTACACAACTGGGACA
TCGTCGTCAAGAGCAGCAGCACGTGGCTGTCGAACTTGGACACCG
Found at i:11810 original size:15 final size:15
Alignment explanation
Indices: 11731--11809 Score: 122
Period size: 15 Copynumber: 5.3 Consensus size: 15
11721 TTCTGGCCCC
*
11731 TCTGCCTCTGGCTCG
1 TCTGCCTCTGGCTCT
11746 TCTGCCTCTGGCTCT
1 TCTGCCTCTGGCTCT
*
11761 TCTGTCTCTGGCTCT
1 TCTGCCTCTGGCTCT
11776 TCTGCCTCTGGCTCT
1 TCTGCCTCTGGCTCT
* *
11791 TCTGTCTCTAGCTCT
1 TCTGCCTCTGGCTCT
11806 TCTG
1 TCTG
11810 TGGCCTCTGT
Statistics
Matches: 59, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
15 59 1.00
ACGTcount: A:0.01, C:0.37, G:0.20, T:0.42
Consensus pattern (15 bp):
TCTGCCTCTGGCTCT
Left flanking sequence: Indices 11231 -- 11730
AGCACATTGGGGAGGTCCTCAGGGACGAGGTCGACCTCGCGGACCTGCTGAGCCTCCTTCTTCTG
GCGCTTGGAGAGGGGGGGTACAACAGTGGCCATGGTGAGATGAGATGAGTTCCCCGATCGTATCT
ATGCGATGGATTATGTAAGCAAGCCATACCGTAGGATCGAGTAGAGAGAAGATGTAGGAGCAATT
GGGACGGAGTGGGATGAATGTATATATGTATATGGTAGCTGGGGGTCGATTAAACCATGGTATGC
TTCGGTGTTGTCTATGCTAGTGAGGGGGGGAGCCGGATGGTGACAATCCCGTTGTCGTAGCTCAC
GCTGGTGGTGCTGCTGAGCTCCATCGTCGACTCCAGGTCCTCGATGGCAGTGAGCTCAGACTCGG
TTTCTGAGGGGTCTTGTGCTGGGTCGTTAGGAATTTCCAGGGCATTAAGCGCCTCTGTGGGCTCT
TCGGTGTCCGCTTCTATGTGATCATCGATGGTCATTTCTGGCCCC
Right flanking sequence: Indices 11810 -- 12309
TGGCCTCTGTCTCATCTGTGGCTTCTGGCTCTTCTGTGATGTCTTCGTGCTCCATGAGAGAGCTC
CCTCGTAGTGGGACCACCGAGAACTGACACGCCCCCTCAGATTCAATGTCAAAGTAAACCACCTT
GCTTGTGTTTTTGCTCTCCACACGCAAACCGTACACGAGCGCCAACTCCGTATGGCTGATCCGAC
TCTTGTAGACCCCCTCCTCGGCAAACCGGGGTGTCTTCTGGAGCCAGTCCCGGTAAAACACGAAC
CGCTGCGCGATGTAGTCGTTACAGATCTCGCTGGGCACAAGCATCATCCGCGTAGGCGCCCGTGA
CAGGTCCCGTGGGTCGCGAGGAGCCTGGGAGCTGGTCATGGGCACAGGCCACGGCTCAAGCTGGC
GGAAACGGGTGTTCAAACACCCCATGAGGCACACCATCGCCGTGTGGGACGTACACAACTGGGAC
ATCGTCGTCAAGAGCAGCAGCACGTGGCTGTCGAACTTGGACACC
Found at i:11827 original size:18 final size:18
Alignment explanation
Indices: 11779--11847 Score: 63
Period size: 18 Copynumber: 4.0 Consensus size: 18
11769 TGGCTCTTCT
*
11779 GCCTCTGGCTCTTCTGT-
1 GCCTCTGGCTCATCTGTG
* *
11796 --CTCTAGCTCTTCTGTG
1 GCCTCTGGCTCATCTGTG
*
11812 GCCTCTGTCTCATCTGTG
1 GCCTCTGGCTCATCTGTG
* *
11830 GCTTCTGGCTCTTCTGTG
1 GCCTCTGGCTCATCTGTG
11848 ATGTCTTCGT
Statistics
Matches: 42, Mismatches: 7, Indels: 5
0.78 0.13 0.09
Matches are distributed among these distances:
15 14 0.33
18 28 0.67
ACGTcount: A:0.03, C:0.32, G:0.23, T:0.42
Consensus pattern (18 bp):
GCCTCTGGCTCATCTGTG
Left flanking sequence: Indices 11279 -- 11778
TGAGCCTCCTTCTTCTGGCGCTTGGAGAGGGGGGGTACAACAGTGGCCATGGTGAGATGAGATGA
GTTCCCCGATCGTATCTATGCGATGGATTATGTAAGCAAGCCATACCGTAGGATCGAGTAGAGAG
AAGATGTAGGAGCAATTGGGACGGAGTGGGATGAATGTATATATGTATATGGTAGCTGGGGGTCG
ATTAAACCATGGTATGCTTCGGTGTTGTCTATGCTAGTGAGGGGGGGAGCCGGATGGTGACAATC
CCGTTGTCGTAGCTCACGCTGGTGGTGCTGCTGAGCTCCATCGTCGACTCCAGGTCCTCGATGGC
AGTGAGCTCAGACTCGGTTTCTGAGGGGTCTTGTGCTGGGTCGTTAGGAATTTCCAGGGCATTAA
GCGCCTCTGTGGGCTCTTCGGTGTCCGCTTCTATGTGATCATCGATGGTCATTTCTGGCCCCTCT
GCCTCTGGCTCGTCTGCCTCTGGCTCTTCTGTCTCTGGCTCTTCT
Right flanking sequence: Indices 11848 -- 12347
ATGTCTTCGTGCTCCATGAGAGAGCTCCCTCGTAGTGGGACCACCGAGAACTGACACGCCCCCTC
AGATTCAATGTCAAAGTAAACCACCTTGCTTGTGTTTTTGCTCTCCACACGCAAACCGTACACGA
GCGCCAACTCCGTATGGCTGATCCGACTCTTGTAGACCCCCTCCTCGGCAAACCGGGGTGTCTTC
TGGAGCCAGTCCCGGTAAAACACGAACCGCTGCGCGATGTAGTCGTTACAGATCTCGCTGGGCAC
AAGCATCATCCGCGTAGGCGCCCGTGACAGGTCCCGTGGGTCGCGAGGAGCCTGGGAGCTGGTCA
TGGGCACAGGCCACGGCTCAAGCTGGCGGAAACGGGTGTTCAAACACCCCATGAGGCACACCATC
GCCGTGTGGGACGTACACAACTGGGACATCGTCGTCAAGAGCAGCAGCACGTGGCTGTCGAACTT
GGACACCGCCAGCTCGCGCACAAGATCCGATCCCGCGGGAAGCAC
Found at i:13280 original size:15 final size:16
Alignment explanation
Indices: 13260--13303 Score: 56
Period size: 15 Copynumber: 2.9 Consensus size: 16
13250 ATGTCTACGT
13260 CTTCTTCCTCCTC-GC
1 CTTCTTCCTCCTCTGC
* *
13275 CTTCTTCTTCCTCTTC
1 CTTCTTCCTCCTCTGC
13291 C-TCTTCCTCCTCT
1 CTTCTTCCTCCTCT
13304 TCTTCCTCTT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
15 23 0.92
16 2 0.08
ACGTcount: A:0.00, C:0.50, G:0.02, T:0.48
Consensus pattern (16 bp):
CTTCTTCCTCCTCTGC
Left flanking sequence: Indices 12760 -- 13259
ACGGCCGGGGAGAACTGGGTGTCATCGCCCACCCGCGTCAGCACGTGGCTGAACCCCAGCTGCTG
GGTCGCGATGATGTCAAAGAGCGAGACCATACGCGTCTGCGCGAAAGATGGAGAAGGTGGTGATG
AATTTTTCACCGCAACACGCCTGGTAAACGGTACGCGTGGGGAAGTGTAGTAGGTGGTAGAGTGG
TAAACAACTAGGGGAGTGTATGGTGAGGCTATTGGAGTGGAGAGATGCTTCAATGTGGTTTGAAT
ATGAAAAACATATAAAATACGGAGCACTTTGGTGAATTTTCAGCTTTTCGGAGCTCTCTAAGTAC
TGCCACCATGATCACTACAGACGCGTTTTGTCGCTGTTCGCCTATTCCTTATTCCGTTTATTGGG
GGTGCCCATTATCGTTACACATAATTAGTCCTTGGGGGTGGTTTCGGGGTCCAAGTCGATCTCCT
CGTCCTCGTCGGCCTCGTCGGCCTCCTCTTCCTCGATGTCTACGT
Right flanking sequence: Indices 13304 -- 13803
TCTTCCTCTTCTTCCTCCTCTTCCTCGTCCACAACCTCGGGCTGCTCTTCCTCGGCCCCCTCGTT
GTCCCACACGATGTTGAACCGGGTCACCCGGGGCTTCTCCGCGAGAATGTTACGCATGACGTGGT
CCACCTGCACTTTGGCCGGAGGGTTCTCGCGCAACTCCTCGGAATCGTACTCGTTGTTGACGTAG
TATCCCACCCGGACAAACTCCCGTTCCGCGTACGAACACAGTAACAATATGACGGTCACCGACAC
CAATTCAGCAGCGGGGATCAATTCCGGCAGCGGGGGGTCGGCTTTGAAAAGGAACTTGTTAATGC
CAACAGGCACCGGGCCCACAAGGATCGAATCAAGCTCCTGGTCGTGGTCTAGCGAGTTCAGCGAC
CCGACGTAGGTGAGCTTCCACTCAAGGTCCTCTTTGAGGGGCTCCAAGCATTCAAACGTGATCTC
AAACTCGTAGGGATCGGTGAACTTGGCCGGGTTGTTGAGCACCTC
Found at i:13290 original size:12 final size:12
Alignment explanation
Indices: 13275--13326 Score: 77
Period size: 12 Copynumber: 4.3 Consensus size: 12
13265 TCCTCCTCGC
13275 CTTCTTCTTCCT
1 CTTCTTCTTCCT
*
13287 CTTCCTCTTCCT
1 CTTCTTCTTCCT
*
13299 CCTCTTCTTCCT
1 CTTCTTCTTCCT
*
13311 CTTCTTCCTCCT
1 CTTCTTCTTCCT
13323 CTTC
1 CTTC
13327 CTCGTCCACA
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
12 35 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (12 bp):
CTTCTTCTTCCT
Left flanking sequence: Indices 12775 -- 13274
TGGGTGTCATCGCCCACCCGCGTCAGCACGTGGCTGAACCCCAGCTGCTGGGTCGCGATGATGTC
AAAGAGCGAGACCATACGCGTCTGCGCGAAAGATGGAGAAGGTGGTGATGAATTTTTCACCGCAA
CACGCCTGGTAAACGGTACGCGTGGGGAAGTGTAGTAGGTGGTAGAGTGGTAAACAACTAGGGGA
GTGTATGGTGAGGCTATTGGAGTGGAGAGATGCTTCAATGTGGTTTGAATATGAAAAACATATAA
AATACGGAGCACTTTGGTGAATTTTCAGCTTTTCGGAGCTCTCTAAGTACTGCCACCATGATCAC
TACAGACGCGTTTTGTCGCTGTTCGCCTATTCCTTATTCCGTTTATTGGGGGTGCCCATTATCGT
TACACATAATTAGTCCTTGGGGGTGGTTTCGGGGTCCAAGTCGATCTCCTCGTCCTCGTCGGCCT
CGTCGGCCTCCTCTTCCTCGATGTCTACGTCTTCTTCCTCCTCGC
Right flanking sequence: Indices 13327 -- 13826
CTCGTCCACAACCTCGGGCTGCTCTTCCTCGGCCCCCTCGTTGTCCCACACGATGTTGAACCGGG
TCACCCGGGGCTTCTCCGCGAGAATGTTACGCATGACGTGGTCCACCTGCACTTTGGCCGGAGGG
TTCTCGCGCAACTCCTCGGAATCGTACTCGTTGTTGACGTAGTATCCCACCCGGACAAACTCCCG
TTCCGCGTACGAACACAGTAACAATATGACGGTCACCGACACCAATTCAGCAGCGGGGATCAATT
CCGGCAGCGGGGGGTCGGCTTTGAAAAGGAACTTGTTAATGCCAACAGGCACCGGGCCCACAAGG
ATCGAATCAAGCTCCTGGTCGTGGTCTAGCGAGTTCAGCGACCCGACGTAGGTGAGCTTCCACTC
AAGGTCCTCTTTGAGGGGCTCCAAGCATTCAAACGTGATCTCAAACTCGTAGGGATCGGTGAACT
TGGCCGGGTTGTTGAGCACCTCAATGCCTAAGAGGGACACGATTG
Found at i:13296 original size:18 final size:18
Alignment explanation
Indices: 13259--13329 Score: 85
Period size: 18 Copynumber: 4.1 Consensus size: 18
13249 GATGTCTACG
*
13259 TCTTCTTCCTCCTC--GC
1 TCTTCTTCCTCCTCTTCC
*
13275 -CTTCTTCTTCCTCTTCC
1 TCTTCTTCCTCCTCTTCC
* *
13292 TCTTCCTCCTCTTCTTCC
1 TCTTCTTCCTCCTCTTCC
13310 TCTTCTTCCTCCTCTTCC
1 TCTTCTTCCTCCTCTTCC
13328 TC
1 TC
13330 GTCCACAACC
Statistics
Matches: 45, Mismatches: 7, Indels: 4
0.80 0.12 0.07
Matches are distributed among these distances:
15 12 0.27
17 1 0.02
18 32 0.71
ACGTcount: A:0.00, C:0.49, G:0.01, T:0.49
Consensus pattern (18 bp):
TCTTCTTCCTCCTCTTCC
Left flanking sequence: Indices 12759 -- 13258
CACGGCCGGGGAGAACTGGGTGTCATCGCCCACCCGCGTCAGCACGTGGCTGAACCCCAGCTGCT
GGGTCGCGATGATGTCAAAGAGCGAGACCATACGCGTCTGCGCGAAAGATGGAGAAGGTGGTGAT
GAATTTTTCACCGCAACACGCCTGGTAAACGGTACGCGTGGGGAAGTGTAGTAGGTGGTAGAGTG
GTAAACAACTAGGGGAGTGTATGGTGAGGCTATTGGAGTGGAGAGATGCTTCAATGTGGTTTGAA
TATGAAAAACATATAAAATACGGAGCACTTTGGTGAATTTTCAGCTTTTCGGAGCTCTCTAAGTA
CTGCCACCATGATCACTACAGACGCGTTTTGTCGCTGTTCGCCTATTCCTTATTCCGTTTATTGG
GGGTGCCCATTATCGTTACACATAATTAGTCCTTGGGGGTGGTTTCGGGGTCCAAGTCGATCTCC
TCGTCCTCGTCGGCCTCGTCGGCCTCCTCTTCCTCGATGTCTACG
Right flanking sequence: Indices 13330 -- 13829
GTCCACAACCTCGGGCTGCTCTTCCTCGGCCCCCTCGTTGTCCCACACGATGTTGAACCGGGTCA
CCCGGGGCTTCTCCGCGAGAATGTTACGCATGACGTGGTCCACCTGCACTTTGGCCGGAGGGTTC
TCGCGCAACTCCTCGGAATCGTACTCGTTGTTGACGTAGTATCCCACCCGGACAAACTCCCGTTC
CGCGTACGAACACAGTAACAATATGACGGTCACCGACACCAATTCAGCAGCGGGGATCAATTCCG
GCAGCGGGGGGTCGGCTTTGAAAAGGAACTTGTTAATGCCAACAGGCACCGGGCCCACAAGGATC
GAATCAAGCTCCTGGTCGTGGTCTAGCGAGTTCAGCGACCCGACGTAGGTGAGCTTCCACTCAAG
GTCCTCTTTGAGGGGCTCCAAGCATTCAAACGTGATCTCAAACTCGTAGGGATCGGTGAACTTGG
CCGGGTTGTTGAGCACCTCAATGCCTAAGAGGGACACGATTGACA
Found at i:13301 original size:9 final size:9
Alignment explanation
Indices: 13275--13329 Score: 74
Period size: 9 Copynumber: 6.1 Consensus size: 9
13265 TCCTCCTCGC
*
13275 CTTCTTCTT
1 CTTCTTCCT
*
13284 CCTCTTCCT
1 CTTCTTCCT
*
13293 CTTCCTCCT
1 CTTCTTCCT
13302 CTTCTTCCT
1 CTTCTTCCT
13311 CTTCTTCCT
1 CTTCTTCCT
*
13320 CCTCTTCCT
1 CTTCTTCCT
13329 C
1 C
13330 GTCCACAACC
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
9 40 1.00
ACGTcount: A:0.00, C:0.49, G:0.00, T:0.51
Consensus pattern (9 bp):
CTTCTTCCT
Left flanking sequence: Indices 12775 -- 13274
TGGGTGTCATCGCCCACCCGCGTCAGCACGTGGCTGAACCCCAGCTGCTGGGTCGCGATGATGTC
AAAGAGCGAGACCATACGCGTCTGCGCGAAAGATGGAGAAGGTGGTGATGAATTTTTCACCGCAA
CACGCCTGGTAAACGGTACGCGTGGGGAAGTGTAGTAGGTGGTAGAGTGGTAAACAACTAGGGGA
GTGTATGGTGAGGCTATTGGAGTGGAGAGATGCTTCAATGTGGTTTGAATATGAAAAACATATAA
AATACGGAGCACTTTGGTGAATTTTCAGCTTTTCGGAGCTCTCTAAGTACTGCCACCATGATCAC
TACAGACGCGTTTTGTCGCTGTTCGCCTATTCCTTATTCCGTTTATTGGGGGTGCCCATTATCGT
TACACATAATTAGTCCTTGGGGGTGGTTTCGGGGTCCAAGTCGATCTCCTCGTCCTCGTCGGCCT
CGTCGGCCTCCTCTTCCTCGATGTCTACGTCTTCTTCCTCCTCGC
Right flanking sequence: Indices 13330 -- 13829
GTCCACAACCTCGGGCTGCTCTTCCTCGGCCCCCTCGTTGTCCCACACGATGTTGAACCGGGTCA
CCCGGGGCTTCTCCGCGAGAATGTTACGCATGACGTGGTCCACCTGCACTTTGGCCGGAGGGTTC
TCGCGCAACTCCTCGGAATCGTACTCGTTGTTGACGTAGTATCCCACCCGGACAAACTCCCGTTC
CGCGTACGAACACAGTAACAATATGACGGTCACCGACACCAATTCAGCAGCGGGGATCAATTCCG
GCAGCGGGGGGTCGGCTTTGAAAAGGAACTTGTTAATGCCAACAGGCACCGGGCCCACAAGGATC
GAATCAAGCTCCTGGTCGTGGTCTAGCGAGTTCAGCGACCCGACGTAGGTGAGCTTCCACTCAAG
GTCCTCTTTGAGGGGCTCCAAGCATTCAAACGTGATCTCAAACTCGTAGGGATCGGTGAACTTGG
CCGGGTTGTTGAGCACCTCAATGCCTAAGAGGGACACGATTGACA
Found at i:16420 original size:17 final size:18
Alignment explanation
Indices: 16398--16437 Score: 57
Period size: 17 Copynumber: 2.3 Consensus size: 18
16388 GACGGAAGCA
16398 TGGTGCA-GGTGGGAGC-T
1 TGGTGCATGGT-GGAGCTT
16415 TGGTGCATGGTGGAGCTT
1 TGGTGCATGGTGGAGCTT
16433 TGGTG
1 TGGTG
16438 GAAGCTAGTT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
17 12 0.57
18 9 0.43
ACGTcount: A:0.10, C:0.10, G:0.50, T:0.30
Consensus pattern (18 bp):
TGGTGCATGGTGGAGCTT
Left flanking sequence: Indices 15898 -- 16397
TCAAGCGCGAGTTGTTGATGGCCCGGGTGCTGTTGTTGGGTCCCGAGTACTTCCAGGAGCTCATT
GCCCTGCACAAGTTGCAGACCAACGAGGGGCTGGCCATTCCCGACTTGCTGGCGACCGAGCTGGC
TTTCCACCCCTCCAACTTGGCTCCTTCCGAGGCTCTTCGCCAGAAGCACACCCACTTGGAGCAGA
TTTCGCAGTTGACGCTGAAGTTTGGTGGTAGAGTCGTGGACATTTCCGACCGCAACGTGGTGGTT
GAGCTTTCTGCCAAGCCGTCGCGTGTTTCGCTGTACATCCAGTTGTTGCAACCCTTCGGGATTTT
GGAGATTGCCCGTACTGGTATGGTGGCGTTGCCCCGGACTCCTCTTGAGGGTTTGAACCAGGAGG
ACGATGACGCTATTGACGCGGCCGACATTGTCGACGCCTCCCAGTTGCCCCCTGGTTAGTATATA
GATCAATCAATATTGTATGAGAAGAGGGTGTGTTGGACGGAAGCA
Right flanking sequence: Indices 16438 -- 16937
GAAGCTAGTTAATAGCTCTCGTGGGAGAAGCGAAGGATAAGAGAGCATGAAGAAAGTGAGAAAGG
AAGTGAGTGGAGAACAATAGCGGGAAGAAAACTAGTTTGTTAGCATTTGGCAAAACTTTGAGGCA
GTTAGTTATGGAGAGTCGTTTATCTGTGGAGCCCACTCATTTACTGACTCTTCCGACAAGCACCA
TGCTTAAACGTATACACGTTACAAGCACGCACATGTATCGACACAGAGACTGCCTAACAAGACTA
GTGTTTATGTTATCCAAACAGGAACAGCCTTTCGTAAATGTCACCTAATGTCGCTGGCTTTGTGC
TACTTCAAGAATCTTGGCGACCATTGTCGTCTTCAGCCGTATCTACATCCGGGAACCTAGCGCAT
TTATTCAAACATTCTATACACTAAGGACGAGGGGCAGGGGGAGGGGGAGGGGGAGCAGGACCCAT
GGGGCCGTATCCCAAGATCCCGCCAAGAGTGTTGGCCAACCCGTG
Found at i:20140 original size:14 final size:14
Alignment explanation
Indices: 20098--20223 Score: 143
Period size: 14 Copynumber: 9.2 Consensus size: 14
20088 GCAACAACAA
* *
20098 CAACAACAACAACAA
1 CAACACCAAC-ACAC
20113 CAACACC-A-ACAC
1 CAACACCAACACAC
20125 CAACACCAACACAC
1 CAACACCAACACAC
20139 CAACACC-A-ACAC
1 CAACACCAACACAC
*
20151 CAAAACCAACACAC
1 CAACACCAACACAC
20165 CAACACCAACACAC
1 CAACACCAACACAC
* *
20179 CGACAACAACACAC
1 CAACACCAACACAC
* *
20193 CAATACCAACACTC
1 CAACACCAACACAC
*
20207 CAACACCAACACTC
1 CAACACCAACACAC
20221 CAA
1 CAA
20224 TAAGAGGGGG
Statistics
Matches: 96, Mismatches: 11, Indels: 9
0.83 0.09 0.08
Matches are distributed among these distances:
12 20 0.21
13 3 0.03
14 67 0.70
15 6 0.06
ACGTcount: A:0.52, C:0.45, G:0.01, T:0.02
Consensus pattern (14 bp):
CAACACCAACACAC
Left flanking sequence: Indices 19598 -- 20097
CAAATTTTGGAGCGTCTGCATGTAAAAACGGCCCCCTCTAACAAACAACCACCCCCACTATACGA
CGAGCTATACGACGACGATTCAACATTTGCCAAAGACTTTACGAGCATTACGTAACACTTTATGT
TAGCCGCTTTACGAGCTGACCTAATACAGTAGTGCGGCTCAACACATGTGATATTTGTCACGTGA
CTTTACAATTGGTACCGTAGATAGCGTTGATTATGGGGAACCTGTATATATCCTAAATAGTACTA
TAAGCCCTCAGTACGGCTTCAGGGTAGCCCGCTCATGCAGGCTATCCCCAAGGCGCACCCAGTGC
TTAACTAAATAATTATAGAAACCCGGATTGGATACCAATGGCACCACCAACAGGGGGAAAAAACG
GTGCCAGTAGCACCCGATTCAACGAATCGAATCGGATACCACTGACACCACCAACAGGGGGAAAA
GGAGCCATTGGCATCCAACCCTTCAACAGCGACCAGCAACAACAA
Right flanking sequence: Indices 20224 -- 20723
TAAGAGGGGGTGGTACCGCTAGTACTTCTGATATCGTCTCTCATATGGCTAAGGAAGCGAAGCCC
AGAGGCTTGCAACTCCCCGCGCCGACCACGGGATGGTTCTGTGGCGATACCGCCCATCCTGACGC
TAGATTGCACCTCCCACCTCCCGGCCCGTCGGCCATCGAGTAGAAGCGTGCAACTGCACATGTCA
GGACTGTTCGAGGACCCGTAGCTGGTAGGTGGCCAACCTACCAGTAACAAACCCTGTCACCAGAC
CAACAGACGCTGAGCCAACCACCCCTGCGCAAGCGCTAAGGGAGGACGACCCAGCCGGGAGACTC
CATCAGAAGTACCAGCAGCACCGAGGCTGTGGTGAGCAAGTATCACCACGCTAACGACAAGCTTT
TGTAGCCTCCTTGGGGGGATTTTTTTCCCCCATCTTCTTTGATTTTCTCTTTGCTTGTCGCTGCC
TTCCGTAGTAACGGGAAAGGAGCCGGGCTTGCAGGGTGCAAGCGA
Found at i:20140 original size:20 final size:20
Alignment explanation
Indices: 20098--20223 Score: 114
Period size: 20 Copynumber: 6.2 Consensus size: 20
20088 GCAACAACAA
* *
20098 CAACAACAACAACAACAACAC
1 CAACACCAACACCAAC-ACAC
20119 CAACACCAACACCAACACAC
1 CAACACCAACACCAACACAC
20139 CAACACCAACACCAA-A-AC
1 CAACACCAACACCAACACAC
20157 CAACACACCAACACCAACACAC
1 C-A-ACACCAACACCAACACAC
* * * *
20179 CGACAACAACA-CACCAATAC
1 CAACACCAACACCAAC-ACAC
*
20199 CAACACTCCAACACCAACACTC
1 CAACA--CCAACACCAACACAC
20221 CAA
1 CAA
20224 TAAGAGGGGG
Statistics
Matches: 86, Mismatches: 11, Indels: 15
0.77 0.10 0.13
Matches are distributed among these distances:
18 3 0.03
19 5 0.06
20 47 0.55
21 15 0.17
22 13 0.15
23 3 0.03
ACGTcount: A:0.52, C:0.45, G:0.01, T:0.02
Consensus pattern (20 bp):
CAACACCAACACCAACACAC
Left flanking sequence: Indices 19598 -- 20097
CAAATTTTGGAGCGTCTGCATGTAAAAACGGCCCCCTCTAACAAACAACCACCCCCACTATACGA
CGAGCTATACGACGACGATTCAACATTTGCCAAAGACTTTACGAGCATTACGTAACACTTTATGT
TAGCCGCTTTACGAGCTGACCTAATACAGTAGTGCGGCTCAACACATGTGATATTTGTCACGTGA
CTTTACAATTGGTACCGTAGATAGCGTTGATTATGGGGAACCTGTATATATCCTAAATAGTACTA
TAAGCCCTCAGTACGGCTTCAGGGTAGCCCGCTCATGCAGGCTATCCCCAAGGCGCACCCAGTGC
TTAACTAAATAATTATAGAAACCCGGATTGGATACCAATGGCACCACCAACAGGGGGAAAAAACG
GTGCCAGTAGCACCCGATTCAACGAATCGAATCGGATACCACTGACACCACCAACAGGGGGAAAA
GGAGCCATTGGCATCCAACCCTTCAACAGCGACCAGCAACAACAA
Right flanking sequence: Indices 20224 -- 20723
TAAGAGGGGGTGGTACCGCTAGTACTTCTGATATCGTCTCTCATATGGCTAAGGAAGCGAAGCCC
AGAGGCTTGCAACTCCCCGCGCCGACCACGGGATGGTTCTGTGGCGATACCGCCCATCCTGACGC
TAGATTGCACCTCCCACCTCCCGGCCCGTCGGCCATCGAGTAGAAGCGTGCAACTGCACATGTCA
GGACTGTTCGAGGACCCGTAGCTGGTAGGTGGCCAACCTACCAGTAACAAACCCTGTCACCAGAC
CAACAGACGCTGAGCCAACCACCCCTGCGCAAGCGCTAAGGGAGGACGACCCAGCCGGGAGACTC
CATCAGAAGTACCAGCAGCACCGAGGCTGTGGTGAGCAAGTATCACCACGCTAACGACAAGCTTT
TGTAGCCTCCTTGGGGGGATTTTTTTCCCCCATCTTCTTTGATTTTCTCTTTGCTTGTCGCTGCC
TTCCGTAGTAACGGGAAAGGAGCCGGGCTTGCAGGGTGCAAGCGA
Found at i:20215 original size:6 final size:6
Alignment explanation
Indices: 20089--20218 Score: 104
Period size: 6 Copynumber: 21.0 Consensus size: 6
20079 CAGCGACCAG
* * * *
20089 CAACAA CAACAA CAACAA CAACAA CAACAC CAACAC CAACAC CAACACAC
1 CAACAC CAACAC CAACAC CAACAC CAACAC CAACAC CAACAC C-A-ACAC
* * *
20139 CAACAC CAACAC CAAAAC CAACACAC CAACAC CAACA- CACCGA- CAACAA
1 CAACAC CAACAC CAACAC C-A-ACAC CAACAC CAACAC CAAC-AC CAACAC
*
20188 C-ACAC CAATAC CAACACTC CAACAC CAACAC
1 CAACAC CAACAC CAACA--C CAACAC CAACAC
20219 TCCAATAAGA
Statistics
Matches: 107, Mismatches: 8, Indels: 18
0.80 0.06 0.14
Matches are distributed among these distances:
5 8 0.07
6 80 0.75
7 4 0.04
8 15 0.14
ACGTcount: A:0.53, C:0.45, G:0.01, T:0.02
Consensus pattern (6 bp):
CAACAC
Left flanking sequence: Indices 19589 -- 20088
CCCCTCTAACAAATTTTGGAGCGTCTGCATGTAAAAACGGCCCCCTCTAACAAACAACCACCCCC
ACTATACGACGAGCTATACGACGACGATTCAACATTTGCCAAAGACTTTACGAGCATTACGTAAC
ACTTTATGTTAGCCGCTTTACGAGCTGACCTAATACAGTAGTGCGGCTCAACACATGTGATATTT
GTCACGTGACTTTACAATTGGTACCGTAGATAGCGTTGATTATGGGGAACCTGTATATATCCTAA
ATAGTACTATAAGCCCTCAGTACGGCTTCAGGGTAGCCCGCTCATGCAGGCTATCCCCAAGGCGC
ACCCAGTGCTTAACTAAATAATTATAGAAACCCGGATTGGATACCAATGGCACCACCAACAGGGG
GAAAAAACGGTGCCAGTAGCACCCGATTCAACGAATCGAATCGGATACCACTGACACCACCAACA
GGGGGAAAAGGAGCCATTGGCATCCAACCCTTCAACAGCGACCAG
Right flanking sequence: Indices 20219 -- 20718
TCCAATAAGAGGGGGTGGTACCGCTAGTACTTCTGATATCGTCTCTCATATGGCTAAGGAAGCGA
AGCCCAGAGGCTTGCAACTCCCCGCGCCGACCACGGGATGGTTCTGTGGCGATACCGCCCATCCT
GACGCTAGATTGCACCTCCCACCTCCCGGCCCGTCGGCCATCGAGTAGAAGCGTGCAACTGCACA
TGTCAGGACTGTTCGAGGACCCGTAGCTGGTAGGTGGCCAACCTACCAGTAACAAACCCTGTCAC
CAGACCAACAGACGCTGAGCCAACCACCCCTGCGCAAGCGCTAAGGGAGGACGACCCAGCCGGGA
GACTCCATCAGAAGTACCAGCAGCACCGAGGCTGTGGTGAGCAAGTATCACCACGCTAACGACAA
GCTTTTGTAGCCTCCTTGGGGGGATTTTTTTCCCCCATCTTCTTTGATTTTCTCTTTGCTTGTCG
CTGCCTTCCGTAGTAACGGGAAAGGAGCCGGGCTTGCAGGGTGCA
Found at i:40463 original size:10 final size:11
Alignment explanation
Indices: 40430--40467 Score: 51
Period size: 10 Copynumber: 3.4 Consensus size: 11
40420 TATCCCCCTA
40430 ACCATCTCCACCC
1 ACCATC-CC-CCC
40443 ACCATCCCCCC
1 ACCATCCCCCC
40454 ACCA-CCCCCC
1 ACCATCCCCCC
40464 ACCA
1 ACCA
40468 AACCCCTATA
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
10 10 0.40
11 7 0.28
12 2 0.08
13 6 0.24
ACGTcount: A:0.24, C:0.68, G:0.00, T:0.08
Consensus pattern (11 bp):
ACCATCCCCCC
Left flanking sequence: Indices 39930 -- 40429
AAGATGAGAGGGAAGTAGACTTGGAGCTGGAAGTATTTGATATACTGAGAAGGTGCTACGGACGA
TGAACTAAGTACGTATGGTTTGGCTCAAGCAGAGGTCGTCACTTCTGGGGATAGGTCAACAAAAA
GCATTCAATATAAACGTAATGGTAGTTTGGAGTAGCGATCGTACGAGTAAGCTTATGGTACTTCG
AAGTGTGATCTGAGACTGGAGAGAAGAATACTGTCGAAGAAAGCGACTATTCACTGTTTCGAGGT
ATAGTGACTTGACGTTTCTAGTCCATTTCACTGGCGGAACTCCACTCGAAGAGGTGGTGGTTGAT
GTACATCTCGCACTGACATGGCTTGATCCCTGATCTGACAACAATCCAGTTAACACCTCTACACC
ACCCAGCGGAACAAACCAATCCACCGCGAACTAACAATACAAAGCCTTTCTCCCGCTTCCCAACA
CAACCCAATCCATCTCACCACACCCACCAACCCCTTATCCCCCTA
Right flanking sequence: Indices 40468 -- 40967
AACCCCTATATACACTCCCCACCACGCGTTTGTTTACTTCCATCACCATGGCCACACCCCAGTCC
CTGACGCCCAGGCGCCGCCAACTGCTGGCTGTTGACGAGTCCGGCTTGCTGGAGGACTCCCCCGT
GTTCGTTCTCCCCGCCAACGTCGCCCGTGTGGCCCTGCTCGCCCTGGCAGTGGAGGACACCACCC
ACCGGTTGGACCAGCTCCAGACGCAGCACACAGCGCTCGCGCTGTTCAACGAGAGCATACTGAGC
TTGCTCTACGGGCTCTCGATGACCATGTGGTGTGTAGACTTCCCCGGAGCCCCGACCCCGGCGGA
GATCCGACGGGCCCCTCCGGAGGTGCTCAGTGCCGCTCAGCGGCGAGACATGGCCAACCGGGTGG
CCCAGCTCGAGCTGCGGAACGACCTCGTGGAGAAGATGATTGCTGAGAGACACAGACAGGCGGCA
GAGGCCGAGGAGGAGGAGCGGAGGAACGCAGAGCGCGACCGGTTC
Found at i:41073 original size:18 final size:18
Alignment explanation
Indices: 41029--41081 Score: 63
Period size: 18 Copynumber: 2.9 Consensus size: 18
41019 TCAGCTCTTC
*
41029 GACCGGGCTC-GCTGCTTA
1 GACCGGGCTCAGC-GCTCA
* *
41047 GGCCCGGCTCAGCGCTCA
1 GACCGGGCTCAGCGCTCA
41065 GACCGGGCTCAGCGCTC
1 GACCGGGCTCAGCGCTC
41082 TCCAGAGACC
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
18 27 0.93
19 2 0.07
ACGTcount: A:0.11, C:0.40, G:0.34, T:0.15
Consensus pattern (18 bp):
GACCGGGCTCAGCGCTCA
Left flanking sequence: Indices 40529 -- 41028
GTCCCTGACGCCCAGGCGCCGCCAACTGCTGGCTGTTGACGAGTCCGGCTTGCTGGAGGACTCCC
CCGTGTTCGTTCTCCCCGCCAACGTCGCCCGTGTGGCCCTGCTCGCCCTGGCAGTGGAGGACACC
ACCCACCGGTTGGACCAGCTCCAGACGCAGCACACAGCGCTCGCGCTGTTCAACGAGAGCATACT
GAGCTTGCTCTACGGGCTCTCGATGACCATGTGGTGTGTAGACTTCCCCGGAGCCCCGACCCCGG
CGGAGATCCGACGGGCCCCTCCGGAGGTGCTCAGTGCCGCTCAGCGGCGAGACATGGCCAACCGG
GTGGCCCAGCTCGAGCTGCGGAACGACCTCGTGGAGAAGATGATTGCTGAGAGACACAGACAGGC
GGCAGAGGCCGAGGAGGAGGAGCGGAGGAACGCAGAGCGCGACCGGTTCGTGAAGGGGACGCCCA
GACAGCCTGCGACGCGGCTGGGGCCTCGTCCCGGGTCAGCTCTTC
Right flanking sequence: Indices 41082 -- 41581
TCCAGAGACCCGATCACCCGGGTGCTGAGGAGTACGGAGGGGAGGGGAGTGAGAGGAGTACCGGG
AGGAGGAAGAGTACCGCCAGCACGGGTGGGTTCCACGACTGCTTACCCAGCGTACGACCGGCCTC
CCCGCTCCCTGTCCCGCGCTGGCCGCGACCAGGGAGCCAACCCGATCAGCCGGTTGGCCCTGGGG
TCGGCCCGGACCAACAAGAGTGTCCAGTTGCGGGAGGCGGCCACCCAGCGGCGGTTGGCGCGGAT
GAACCAGCGGAGGTAGCATAGCATTGTATTATAGTGTAATATTAACGTGGATAAGGGAAAGGTGG
GTTTTATTGAATTGGGTTTTAAGGTGGCTATATGATTGGAGGCTGGTGTATTGGTGGGTATATAG
GTGGAGGGGAGGTGGAGAAGAGGTGGGTAGGGTTGTTGTGACCGTTGGTGGGTACTCCTTTGGTC
ACTCTTAAGTTCGGTGACTGTTCTTGGGTCAATTGGTTGTAATGA
Found at i:49140 original size:19 final size:19
Alignment explanation
Indices: 49092--49140 Score: 53
Period size: 19 Copynumber: 2.6 Consensus size: 19
49082 GCTACCATGC
**
49092 AATGGCTCATTTAACTTTT
1 AATGGCTCATTTAACTTAA
* * *
49111 AATTGCACATTTAGCTTAA
1 AATGGCTCATTTAACTTAA
49130 AATGGCTCATT
1 AATGGCTCATT
49141 AAATGTTGCT
Statistics
Matches: 23, Mismatches: 7, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.31, C:0.16, G:0.12, T:0.41
Consensus pattern (19 bp):
AATGGCTCATTTAACTTAA
Left flanking sequence: Indices 48592 -- 49091
TTTTCCACGTAGATTAGCTCTAGGCTGAACGATTGGTGTTTGGTTGGCGACCGCACGGCTTGTCG
ATACTCTTGGCGACCAGCTGATTCAGGCACGATGCAGCCGCTGTCAGCCTTGCGGGCACCTATCG
GCAAAAACCGATGGACAGCCCCAGTTAGAGCGAGATGGGCCCACAATCCAAAGGTGGCTGAATGC
GTTAACGACCCCGCTCGTCTAGTTGACGGTAAGAATGGGCTCTGAACCACCGTTTAAGACTGAAA
TTGTGAGACTAGAGCAGGATGTAGGGAGCGGGAGACTGAAAGATAAACCACCCTCAAATAGTGTC
CTCTAAACCATCATGCTGTAGGGGTCTTTTAGGCGTGTTTTAGTGCTATTGTTTGCCCTAAATAC
GTGGGGATTCTGACACAAGCAGTGAATCTGGTCCTACATTGACACTGAGACACCGGTCAGGGGCT
CCTGAGTGCATATATGGCACAAACTATAAGCTGAGGCTACCATGC
Right flanking sequence: Indices 49141 -- 49640
AAATGTTGCTCGAAATCTCCTTGTAGTGTCATCGGAGGCTTATCTACTGAGTCTACCACAAAACC
ACTTGAAAAATACACGGCTCTCCCAGCTGGTATCTGGGCTTAGTAGGGTCTTACTGGTGCAATAT
GTGGGTCGTGATTTCCATGAGGCGAACCTACTCGTACTGTGGTGCTTCCTTGACAATACAGCGTG
AGCTTGAACTTCAAGTAGGCGGGCAAGTCGGATCGACACAATCCGGGATGCCGCATAAAACGGTG
ACGCGGCTTAGGTACTTTCGCCGTGCTGCTACTGCAACATTGTGATCTTCAATCGACTCGCCTGT
TTTGCAAACACAAGCCTCCGGGTGTACTTGTCTGTAGAATTCTTCTGGGGAACTCTTCTGGGTAC
GATCAAAGCTGAGACTCGACAACTAGGGAATAGCTGCCACCAAGGTCCATGGGTAGCAAAAAACA
GGGATCTTTCTTGTCTATTGGTGTCCCGTGCCTCTAACTGCACCG
Found at i:51317 original size:15 final size:15
Alignment explanation
Indices: 51299--51337 Score: 53
Period size: 15 Copynumber: 2.7 Consensus size: 15
51289 CTGGTGGGGG
51299 TGGTGTGTGCGCTGC
1 TGGTGTGTGCGCTGC
* *
51314 TGGTGTGTACGCTGG
1 TGGTGTGTGCGCTGC
51329 T-GTGTGTGC
1 TGGTGTGTGC
51338 TGCTAGTGTC
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
14 7 0.33
15 14 0.67
ACGTcount: A:0.03, C:0.15, G:0.46, T:0.36
Consensus pattern (15 bp):
TGGTGTGTGCGCTGC
Left flanking sequence: Indices 50799 -- 51298
GTAGGGCAACACCCTGACTAGGGCCTCCCAGAACCCGTCCTTCTTGCGCTGGCGCAGCCAGATCC
GGGCGCACACGTCGGCCCGCGAGAGCTGGTGCAAGTAGCAGTAGCCAGCGATGAAGTAGTCCACG
GCGTCGATCTCGGCCCGGGCAAACATCCGCGGGCCCGCCCGCTGGCGCTCCCCGGGGACACAGGG
GTGGCGGCGCCCGTCGTCGGTCTGGTTGTACCAGGCGACGGCCCGGGCGCTGGCCTCTTCGACCA
CCTGGTCCACCGAGGGCATGTGCGCGTAGGTGCGCTCCAACTCGGCGGCACAGTACTCGCGCGGG
TTGTGGCGCTGGTGCCGCAGCACCTCTGGCGCCGGGGCAGGGTCGGTGTCGGACCCCGGGGACGG
GGTGCGGCGCGGGGGCTTCGCGAGCGACGCGCGCACGGCGGAGAGGGCCAGCGAGAGGGCGCTGG
AGCGGGTGGAGGTGCTGGTGCGGGATGACGGGGTGCTGGTGGGGG
Right flanking sequence: Indices 51338 -- 51837
TGCTAGTGTCTGGGTGGGAATCACTGGTGTGGGTGCCAGCGTGGGTGGCAGTGTGGCCACGGCTG
CGAGTGTAGGTACCATGATGGGTACCAGTAGCACCCTGGTGGGTACCAGCACCACTGTGAGTAGT
CCCCGTACCGTTGTGAGAGGCCCCCGTGCCTGTGTGTCCATTCTCAGTGTCTGTGTGGTCGTCCC
TGCCTCCGGTGCTGTCGAGTGCCAGCGCCGCGTGGGCCAACTGGTGGATCGCCAGCTCGCGGATG
TGCTTGGTGAGCTCGCGCACATCCAAGAGCGCCTCCTCCACGAGCTTTTCGTGGTCGGAGGGCGA
CGGCGAGAACTCTGTGGGCGACGCGTTCGAGCGCGCCAGCGGGGTGTGCGAGGTGTCGCTGTCGC
TGTCCTTGTAGGTGCGGTAGTGCTTGTCCTCCTCCTCCTCCTCCGCCAGCCCCGTCAACTCCTCG
ATCTCCTCCATCAACAGGTCCTCGGCTAGGTACTCCGGCTGCAAC
Found at i:52279 original size:11 final size:11
Alignment explanation
Indices: 52247--52288 Score: 57
Period size: 11 Copynumber: 3.7 Consensus size: 11
52237 GGGTTAGCGA
52247 GGCGGGTGCAG
1 GGCGGGTGCAG
*
52258 GTGCCGGTGCAG
1 G-GCGGGTGCAG
52270 GGCGGGTGCAG
1 GGCGGGTGCAG
*
52281 TGCGGGTG
1 GGCGGGTG
52289 TAACATAGAC
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
11 17 0.63
12 10 0.37
ACGTcount: A:0.07, C:0.19, G:0.60, T:0.14
Consensus pattern (11 bp):
GGCGGGTGCAG
Left flanking sequence: Indices 51747 -- 52246
GTGCTTGTCCTCCTCCTCCTCCTCCGCCAGCCCCGTCAACTCCTCGATCTCCTCCATCAACAGGT
CCTCGGCTAGGTACTCCGGCTGCAACTCCATGAGGTTGGGATCGATGTCGTGCTTCGGCCGTGTT
CGCAGGCCCCGAGGGTCCTTTTTGGGCAGCCTGGTGGCCACCCGCCGCCGCTTGTGGCCCTCCTC
GAGCTCCTCGAACTCCGCGAGGTAGTCGTCCCCCTCCAACAACCACGCGAGCTCCTCCTCTGCGC
GTTTGCGAGGCACCGTAGGCCGGTGCAGCAAGGTGCCTCCCACGTACTTGATGACGGCGGCCTCG
ACGGTGTCACCCAAGTGGTCCACGTCGGGCTCGTCCTTCTTGGTCATCAGCAAGAGCGCCTGGGC
TCCGCCGATGTCTTGTTGGGCGTCCATTAACGGTAGTTACCCGGTCGCACCGCGATGAGGTGCTG
TGGGGCGTGCGGCTGACGGCGCTACCATGTTGTTTGGGTTAGCGA
Right flanking sequence: Indices 52289 -- 52788
TAACATAGACAGCCGGTGTAGAAGCGGCCAGACACGCTGGACGACAGCAAGAGACCGTTGAACTT
TATCTGCGGCGTGCCATTCACGAGGCGAACCAATTGAGCAGGACTCAGCCACGGCGTGAACGATA
ACCGGGATCAGCACGGACTAGGGGTACAGGTTTCAGGCGAGCACAATCAGCACCAGATCAGCACC
AGATCAGTACAAGCTCAGCACAAGCCCAGCACAAGCTCCGCACAAGCTCTGCACACGATAACTAC
ATCACAACACACGGTTACACGAACACACCACACAACACACCGCACAAACACCCCACCCTACCTCA
CCCACCTCCCCATAGTTCAGGTTCACCACACGATCTGAACTAAATTATCAACCAGACCACCGGTT
GAACCACTTCAAGACTTCCACACAGTCTACCACACAGTCTACACCCTTTTTTTCATGGACTTGTC
TTCCCTTCTGAAGGAGGACCTCGTTGCCAAAGTGCGCGAACTCGA
Found at i:52506 original size:11 final size:11
Alignment explanation
Indices: 52465--52538 Score: 76
Period size: 11 Copynumber: 6.7 Consensus size: 11
52455 GCGAGCACAA
* *
52465 TCAGCACCAGA
1 TCAGCACAAGC
* *
52476 TCAGCACCAGA
1 TCAGCACAAGC
*
52487 TCAGTACAAGC
1 TCAGCACAAGC
52498 TCAGCACAAGC
1 TCAGCACAAGC
*
52509 CCAGCACAAGC
1 TCAGCACAAGC
*
52520 TCCGCACAAGC
1 TCAGCACAAGC
*
52531 TCTGCACA
1 TCAGCACA
52539 CGATAACTAC
Statistics
Matches: 55, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
11 55 1.00
ACGTcount: A:0.34, C:0.38, G:0.18, T:0.11
Consensus pattern (11 bp):
TCAGCACAAGC
Left flanking sequence: Indices 51965 -- 52464
AGTCGTCCCCCTCCAACAACCACGCGAGCTCCTCCTCTGCGCGTTTGCGAGGCACCGTAGGCCGG
TGCAGCAAGGTGCCTCCCACGTACTTGATGACGGCGGCCTCGACGGTGTCACCCAAGTGGTCCAC
GTCGGGCTCGTCCTTCTTGGTCATCAGCAAGAGCGCCTGGGCTCCGCCGATGTCTTGTTGGGCGT
CCATTAACGGTAGTTACCCGGTCGCACCGCGATGAGGTGCTGTGGGGCGTGCGGCTGACGGCGCT
ACCATGTTGTTTGGGTTAGCGAGGCGGGTGCAGGTGCCGGTGCAGGGCGGGTGCAGTGCGGGTGT
AACATAGACAGCCGGTGTAGAAGCGGCCAGACACGCTGGACGACAGCAAGAGACCGTTGAACTTT
ATCTGCGGCGTGCCATTCACGAGGCGAACCAATTGAGCAGGACTCAGCCACGGCGTGAACGATAA
CCGGGATCAGCACGGACTAGGGGTACAGGTTTCAGGCGAGCACAA
Right flanking sequence: Indices 52539 -- 53038
CGATAACTACATCACAACACACGGTTACACGAACACACCACACAACACACCGCACAAACACCCCA
CCCTACCTCACCCACCTCCCCATAGTTCAGGTTCACCACACGATCTGAACTAAATTATCAACCAG
ACCACCGGTTGAACCACTTCAAGACTTCCACACAGTCTACCACACAGTCTACACCCTTTTTTTCA
TGGACTTGTCTTCCCTTCTGAAGGAGGACCTCGTTGCCAAAGTGCGCGAACTCGAGCGTGTGCTC
CAGGACTTCCAAGAACTGCTGAAGGAACTCGAGCAGGCACTCGAAGAAGAGCTCGAGCAGCAGGA
GCGCGAGAACACAGCCACCAAGCGCCAGCTAGCCCAGCTCACCCGCGACCACGAGGCCAACACCC
GCAAGGTGTTTGCCCTCACCACCGAAAAGAACACCATGGTGGAGCACCACCTCGCGGAGGTGCGC
CGCCGCGACGACGAGGTGCGGCACCTCCGCTCCCAGCTCGTCACC
Found at i:52713 original size:12 final size:12
Alignment explanation
Indices: 52696--52720 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
52686 TTCAAGACTT
52696 CCACACAGTCTA
1 CCACACAGTCTA
52708 CCACACAGTCTA
1 CCACACAGTCTA
52720 C
1 C
52721 ACCCTTTTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.44, G:0.08, T:0.16
Consensus pattern (12 bp):
CCACACAGTCTA
Left flanking sequence: Indices 52196 -- 52695
GTGCTGTGGGGCGTGCGGCTGACGGCGCTACCATGTTGTTTGGGTTAGCGAGGCGGGTGCAGGTG
CCGGTGCAGGGCGGGTGCAGTGCGGGTGTAACATAGACAGCCGGTGTAGAAGCGGCCAGACACGC
TGGACGACAGCAAGAGACCGTTGAACTTTATCTGCGGCGTGCCATTCACGAGGCGAACCAATTGA
GCAGGACTCAGCCACGGCGTGAACGATAACCGGGATCAGCACGGACTAGGGGTACAGGTTTCAGG
CGAGCACAATCAGCACCAGATCAGCACCAGATCAGTACAAGCTCAGCACAAGCCCAGCACAAGCT
CCGCACAAGCTCTGCACACGATAACTACATCACAACACACGGTTACACGAACACACCACACAACA
CACCGCACAAACACCCCACCCTACCTCACCCACCTCCCCATAGTTCAGGTTCACCACACGATCTG
AACTAAATTATCAACCAGACCACCGGTTGAACCACTTCAAGACTT
Right flanking sequence: Indices 52721 -- 53220
ACCCTTTTTTTCATGGACTTGTCTTCCCTTCTGAAGGAGGACCTCGTTGCCAAAGTGCGCGAACT
CGAGCGTGTGCTCCAGGACTTCCAAGAACTGCTGAAGGAACTCGAGCAGGCACTCGAAGAAGAGC
TCGAGCAGCAGGAGCGCGAGAACACAGCCACCAAGCGCCAGCTAGCCCAGCTCACCCGCGACCAC
GAGGCCAACACCCGCAAGGTGTTTGCCCTCACCACCGAAAAGAACACCATGGTGGAGCACCACCT
CGCGGAGGTGCGCCGCCGCGACGACGAGGTGCGGCACCTCCGCTCCCAGCTCGTCACCGCCGAGA
TCTCCAACGACGACTTCGAGACCCACGACCGCGTGCTCCAGGAGAAGCTCCGGCTCCAGACCCAG
TTCACCAACGACTTGCTCGAGAAGATTGCCCTCGTGGAGCTGGACCTAGACCGCGAGCGCCGGAA
GGTGGCGGAGGTGCAGTTGCACGCACTGAACGTGCACAACGAGGC
Found at i:59391 original size:15 final size:15
Alignment explanation
Indices: 59371--59428 Score: 91
Period size: 15 Copynumber: 3.9 Consensus size: 15
59361 AAACACCTCC
59371 CGTCCCCTCTCCTTT
1 CGTCCCCTCTCCTTT
59386 CGTCCCCTCTCCTTT
1 CGTCCCCTCTCCTTT
*
59401 CGTCCCCTCTCCTCT
1 CGTCCCCTCTCCTTT
59416 CG-CCCCTCCTCCT
1 CGTCCCCT-CTCCT
59429 GTCCCCTTTG
Statistics
Matches: 41, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
14 5 0.12
15 36 0.88
ACGTcount: A:0.00, C:0.59, G:0.07, T:0.34
Consensus pattern (15 bp):
CGTCCCCTCTCCTTT
Left flanking sequence: Indices 58871 -- 59370
ATGAGGCCTAATTGAGATCTGACCCCTGTAAAATGACAGGTCACTCTGAACAACTGAAAGATTGA
GCCCAATGTGGTAGTCTTCAACTGATTGTTCAGCGAAGCAGTTCCTGGAAGCTCCCAGCTGCCAA
CTCGGCTAAGGCAATAGCTAATGGTTTTGAGTTTTTAGCAAGCGAACAGAGTCTAAGGGAGGGGA
TTCAACTGCTTTTTTTATGATTTCCGAGATGAATTTCAAACCTTGGCTCGCTTTCTACCATAACA
GTACTACCAAAAAGCACACAGATATCTTACCAGGTCTACGAACAACTCATCCCAACTACTCCTCT
GACGTGCCACTGTTCAAAGCACACAGATTTCTCACCCGGTCTACAAAATCCTTCTTTCACCAACT
CATCCAGTCGACTAATCCCCTGCCCTTCTCCAACAACTCTTCATCTCATATCCATAAATAACCTC
AAGGACACCACCACTACCAACAACGCCTACAACTAAAACACCTCC
Right flanking sequence: Indices 59429 -- 59928
GTCCCCTTTGGGCGATTTTTTTCAGGCAAAAACCGGGCCTGCACACAACCTCGCCTCCATTGGGT
GCAAATAGATCGTCAATCCTCACCACCAGGCATGGCCACCCTCAAGGACCAAGGCAACCAGGCGT
ACGGTCGCGGCGAGTACACCAAGGCAGCCAAGCTCTACCGCGAGGCCCTCAAAGCCGACCCCAAG
GCCACCGTGCTCTACCTGAACCGGTGCCAGTGCTTCCTCAAGCTCGGGGATTTTCGGCGCGCACT
CAACGACGCGGTGGCGGCGGTCAACACCTTTGACGACCAGACCACCCTGGCACTCAAACTGAAGG
TGTACTACCGCAAGGGGATGGCGTTTGTGGGGTTGGGCGAGCGAAAACGCGCCCACTACTGTTTT
GAAAAGGCGGTGGGCTTCGACTCGGGCAACCGCGACGCCCGGGCCCAGATGGCCCAGTTGGGTAA
TTTAGCCGCGGAGGTGCCCGTGGAGGTGGTGGGCGAGCTTCCACG
Found at i:67734 original size:15 final size:15
Alignment explanation
Indices: 67714--67761 Score: 78
Period size: 15 Copynumber: 3.2 Consensus size: 15
67704 AACAGCCGAA
67714 AACAACCGAAAGCAG
1 AACAACCGAAAGCAG
67729 AACAACCGAAAGCAG
1 AACAACCGAAAGCAG
**
67744 AACATTCGAAAGCAG
1 AACAACCGAAAGCAG
67759 AAC
1 AAC
67762 CTTGGATATG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 31 1.00
ACGTcount: A:0.52, C:0.25, G:0.19, T:0.04
Consensus pattern (15 bp):
AACAACCGAAAGCAG
Left flanking sequence: Indices 67214 -- 67713
CGAGCCCGGCCCCTCGTTCCCGGGTCCGGCACCGCCAGTGTCACCAGCACCCCCCACTCGCTGTC
GCCCGTGCTCAATCCCCAGCGGGCCCACCACAAACAGGTTTTGCTCCGGTTCTTGGACAAGGTGC
TTGAGTTCTCCTACCCGACCCGCAACTCAGCCCCGCCCCGGTACTACGAGCTTGTGGAGAATGCC
CGTAGTGCGTTCAATCTAGCATCGAAAACGATATTGGGTCTCCGAGACCTCCACACCCACCAGAC
GATACAGACCGACGGCGACTTGGAACGCATTTTCACCCGCCAGGACGCTATCGAGCTCGAGGTAT
TCACCCAGGGCGCGAAAGCGATCCCGATATACGAGTTGACACTGACAGTGACGAGTAGAGGTGGC
ACCAATAGCCCCCGCTACCTTCTCCCACCAATAAAACCCCCCATAGACAGCTTCCAGCCGTTGCT
ATAGGGATTAATAGTTAATAGAAGTCATGAAGCAGAACAGCCGAA
Right flanking sequence: Indices 67762 -- 68261
CTTGGATATGACTAGATTGTTGCGACCGCGGTGAATGACGGCTTCCGAAGTAAGGATAGAGGTAT
CTCGAGCCGACTTGCTCGACATGGGGAGACATTCTGCAACCACTTCAGGACGCAGAGCAAGAACT
CTTGGCCCCCAGAAGGCAGTGAAACGCGGATCTCCCAGGACTTACTTTGCAACCAGCCTTTAGTC
GCGCGGTCTGTGCCTGAATAGGGTAGTGGTACGAGGTATCGAAGTTCCGCCGTGTGGGCCAATAA
GCAACTCGACTTCGTCAATTAGATTCGATCGTACAGCAAGCGGAAGATCCCCTAAAGAAAAATCA
GCAGAGATAGGGGAAATAATTTTGCCATGGTATAAAAAATACGGAGACCAGCTGGTATTGCCGAG
CTCGTCTAATGTCTGGTGACTCCGGAGAAATGCCCATGGTGGCTCGTTCGGTGGCTAGTGGCAGA
GGTTGTCACTCGGTAGCAGGTCGTCATGGGCTCTCCCTCTGGCAG
Found at i:68391 original size:15 final size:15
Alignment explanation
Indices: 68371--68401 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
68361 CCCCATATTT
68371 CTAGGAGCCGAGGAC
1 CTAGGAGCCGAGGAC
68386 CTAGGAGCCGAGGAC
1 CTAGGAGCCGAGGAC
68401 C
1 C
68402 GAGAAATGGC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.26, C:0.29, G:0.39, T:0.06
Consensus pattern (15 bp):
CTAGGAGCCGAGGAC
Left flanking sequence: Indices 67871 -- 68370
TCAGGACGCAGAGCAAGAACTCTTGGCCCCCAGAAGGCAGTGAAACGCGGATCTCCCAGGACTTA
CTTTGCAACCAGCCTTTAGTCGCGCGGTCTGTGCCTGAATAGGGTAGTGGTACGAGGTATCGAAG
TTCCGCCGTGTGGGCCAATAAGCAACTCGACTTCGTCAATTAGATTCGATCGTACAGCAAGCGGA
AGATCCCCTAAAGAAAAATCAGCAGAGATAGGGGAAATAATTTTGCCATGGTATAAAAAATACGG
AGACCAGCTGGTATTGCCGAGCTCGTCTAATGTCTGGTGACTCCGGAGAAATGCCCATGGTGGCT
CGTTCGGTGGCTAGTGGCAGAGGTTGTCACTCGGTAGCAGGTCGTCATGGGCTCTCCCTCTGGCA
GGTGTGACATTGAGGGGTACCCACGCATTGGTATGGTAAGGGACTCCGTGAGGTTAATATTCAAG
CAAGTATCAGGTTTGGCAGGCAACTTAGGTCAACACCCCATATTT
Right flanking sequence: Indices 68402 -- 68901
GAGAAATGGCTATCAACAATTTTATAACCGACTCGGCTTTCTTTGCACAAAAATAATGGGAGTAG
CGAAGAATCTTCCAGTAGAAATTTCAAAAGCCACTTTCACAAGGAGCTTTCCCGGTGCTTTCGCT
CCGCCTGGCCATTTTGCTTTTCCTCGGTGACACTTTTCCACCATCGTTTCCTAGAGCAGAAATTT
CACGTTTCCTTTCTCCCGCCTGTGGTCCACAAAGAAACCAAACAACTTCTTTTACGCAAAAGCAA
TGGGTTGAAAAGGGGGATTCCCGTAAGGCTGGGCCCGTCTAAATGACACCCTTTGTCTTCGTCGT
GTCGCCAGCTGCTGTCCCTCGACACGAGATCTCCTTCGTAAACGGTCTCCAGGGACCAACCTTAA
AGCGTATTTTCAGGAACCCGCCCAAATCACGTACCATGATGTAACAAACCGTGAATGGTACTTGC
ATGGAACAACCAAACATGTACGGTGGGTTCGCCGTCGCGTCGTCG
Found at i:72547 original size:15 final size:15
Alignment explanation
Indices: 72516--72558 Score: 54
Period size: 15 Copynumber: 2.9 Consensus size: 15
72506 ATCCACTCTA
72516 CTCGCCT-CTCCTCCC
1 CTCGCCTCCTCCT-CC
*
72531 CTCGCCTCCACCTCC
1 CTCGCCTCCTCCTCC
72546 CTC-CCTCCTCCTC
1 CTCGCCTCCTCCTC
72559 ATACCCCGTC
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
14 9 0.36
15 12 0.48
16 4 0.16
ACGTcount: A:0.02, C:0.67, G:0.05, T:0.26
Consensus pattern (15 bp):
CTCGCCTCCTCCTCC
Left flanking sequence: Indices 72016 -- 72515
AGGGGTGGAAAGACAGCCGTGGATGAGACCTGAAATGAATTTCAGTGCCTGAGCCGTAGCGAGTT
TTCAAAACAAGCCGGCAGATAGAGCGGCTTAGTCACGGGTTTGTAGCAAACGAAGACTGTGTAAT
TTCACCGTGGTTTTTGGCTGGCCAGCCATTCTGGTGGAGCCTTGGGTTCTTTTCTGGACCTATCT
CAAGGTTCATACGGAGACAAGCCCCATCATTCGTGGGTCCGTCTCGCGGTAGCCCATGTCCGTGC
CGTATCTACATAATGACGACAACTGCTCTACCCCACAGACGGTGTTTATATATTTCTACTTTCCA
CAATAGAACCTAGCGTCCCATCATGAACCATTCCATCTAACCCCCTACTCGTTGTCGCACTCCCT
TCTGCAATTGCACCTCAGTCCTTCCTCCTCGGTCCACCCTCCAACCTCCTCCACCCCCCACCACC
GTCGCAGACCTCACATCCGCCCCCCACCACCATCAATCCACTCTA
Right flanking sequence: Indices 72559 -- 73058
ATACCCCGTCTCACGTGACTTCAAATCCCATCGTATACTGGCTCCATACAGTACTCCGAGTCACC
TCCCGATCCACAATGCTTTTGGGTCCCAGCCAACGATTCCTCGGACTGCGAGGGTGGAGCCGGTT
GCGGGGCTCCCCCCGAACCGTACGAACCCCCGTCCGCAGCGTCAAAACCTCCACGGTCGACTGGA
AGCCGGTGAGGGCGGTCGAAGGTAATTTGACCACCCTCGAGCACCAGGCGAAAACCCCATGGTTG
CGGCGGTTTTTCCTCGGGCTTATGATCGCCATGCCCGTGATCTCATTTACTTTGGGCTGCTGGCA
GGTGCGGCGGCTCCGGTGGAAGGCTGACCTTATTGCCAAGTGTGAAAACAACCTTGCAGCAGAGA
CCATCCCCGAGTTGCCGGCCCAGTTGGACCCTGACGCGATTGCTGAGTTTGAATACCGCCGGTTC
CGGTGCAAGGGCCACTTTGACTACTCCCAGGAGATGTTTTTGGGG
Found at i:80527 original size:13 final size:13
Alignment explanation
Indices: 80509--80537 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
80499 CAACTGAGGA
80509 TTTCTGTTGAAAT
1 TTTCTGTTGAAAT
80522 TTTCTGTTGAAAT
1 TTTCTGTTGAAAT
80535 TTT
1 TTT
80538 TCAAATTGTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.21, C:0.07, G:0.14, T:0.59
Consensus pattern (13 bp):
TTTCTGTTGAAAT
Left flanking sequence: Indices 80009 -- 80508
AGGCTTTGACCGGTGAGTCCGTCACTGAGTGCACCTACTTGGACTTGTCTTCGGACATCAAGGGT
GCCGCTGAGGCCAAGAAGATTGTCAACGACCTTGACTTCTTCTCCTTGCCCGTTAAGTTGGGCAA
GAACGGTATCGAGGAGGTTCAGTACGACGTGTTGAACAAGACCACCGACGCCGAGAAGAAGTTGA
TCGAGGTTGCCGTTGGCCAGTTGAAGGGTAACATCGAGAAGGGTGTTGCTTTTGTTAAGAAGTAA
GTTACGAAATAAACGACATAGATGTACGGCTGTAGAGCGTTGAAGATTCAGCGCCAACGTCGCAA
TTTTGATCCGACATTCCAGCGTCATAGTACATTACCGAGCGTCCGAGCACGAAGCATGTGACTAT
AGGTAGCGAGTCTGGAGCCGAAGAGAATCCGAAGATGGGACACTTCTGGCGTTACAAAACCGAAC
GTGCATTTTATAAGTGTTTTGTGGAAGGCGGTTTCCAACTGAGGA
Right flanking sequence: Indices 80538 -- 81037
TCAAATTGTTGCAAACTTCCCAAAAAGTACAATTCACCAAAAACACCCTAGTTCGAATCTCACTC
CAGGCTTTATTCATTCATTCACTCTACTACCATATTTCTAACTATTCTCTGGATCTACTCCCCTC
GAAACGCTCAACCGTTCTCTCGAACTGGTCCCCCATCAATGCATCCATAGCTGCCACCCCAGCTG
ACGCCGTCACAGGCAGATTCAACACCAACAACACTAACCACTGGCACAACCGGTGGAGCTCCTGG
GGCTCCTTGGCCACCACACCCAACCAGTTCACGGGACACTGTAGGTGGGGGCGAGCGGTCGCAAG
CGCTAACAGCAGTTGGTGGATCGCTTGGATACAACGGACGTGGGACCACGGAACGACGAGGGCAC
CCCCAGAGGTTTCAACAGGCAGTGCCCCACGGGACTGCACCTCTGGGTTGAATTGCTGCAAATAA
GGCTCAGGGACAATTGTTGCAATGGCCTGATAGAGCGTGTAGGGG
Found at i:86180 original size:18 final size:18
Alignment explanation
Indices: 86157--86227 Score: 90
Period size: 18 Copynumber: 3.9 Consensus size: 18
86147 TCTGGCCACC
86157 TCTGAGGCTGCTTCCTCT
1 TCTGAGGCTGCTTCCTCT
* *
86175 TCTGAGGCTGCTTCGTCG
1 TCTGAGGCTGCTTCCTCT
*
86193 TC-GCAGGCTGCTTCTTCT
1 TCTG-AGGCTGCTTCCTCT
*
86211 TCCGAGGCTGCTTCCTC
1 TCTGAGGCTGCTTCCTC
86228 CGAGGCTGCC
Statistics
Matches: 46, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
17 1 0.02
18 44 0.96
19 1 0.02
ACGTcount: A:0.06, C:0.34, G:0.25, T:0.35
Consensus pattern (18 bp):
TCTGAGGCTGCTTCCTCT
Left flanking sequence: Indices 85657 -- 86156
ACGCCATTGAGGAGTCCCAGACCTTTGTGCTTGAGGACGAGTCGTCGCAGATCTCGGTTGCCGCT
GCCCACGGTGACCAGGCTTTCACCGTGGCTGGCTACGGTGGTGGCAACGTCATTGGTACTGACTT
GACCATCACCAACTTCGAGTACAACGACGTCACCGGTGTGCTCAAGGTGTGGAACGGTGCCGTCA
CCAACGAGTTCAACATTGGTACTGGCTACGTCTACGAGGACTTCTGGCTTGACACCACCAACCAA
CCCCTGAAGATCACCAACAACGGTTTGAGATACGTCGGTCCTGTGCCCGATGGTGCTAACAAGAG
CGATGGTTGCATGCCTTGTGAGCCCATCCCCGACTTCCCCACTCCCCTGGAGCTGCTGCTGGCTG
TGTCGTCGCTGACCATGGCTCTGTCCCTGGCTGCTTCTTCTCTGGCTGCCACCTCGCTGGCTGCG
TCTCTGGAGCCCGCCAGCTCTTCGGAGGCCGCCTCTCTGGCCACC
Right flanking sequence: Indices 86228 -- 86727
CGAGGCTGCCTCTACCTCGACTGTGCCTCCCGCTGCCTCGGTTCCCGCTTCGTCGGCTGCTGCCT
CTTCTGCTGCTGAGTCGTCTGCTGCTGAGTCTTCCGCTGCTGCCTCTTCTGCTGCTGAGTCGTCT
GCTGCTGAGTCTTCCGCTGCTGAGTCGTCTGCCGCTGAGTCTTCCGCTGCTGCTTCTTCCGCCGC
CGAGTCGTCTGCTGCTGCTTCTTCTGCCGCCGAGTCGTCTGCCGCCGAATCTTCTGCCGCTGCTT
CTTCCGGTGCCGAGTCTTCTGCTGCTGAGTCGTCGGCTCCTGGTGCTACTGACTCTTCTGAGGTG
CCCACTGTGACTGCTACTGAGTGCCCTGACTGCACTGAGTACACCACTACTTGGACCACCACTGG
CACTGACGACAAGCCCTCGACCGACTCTGGTGTTGTGATCATCACCACCACTGACGGCTCGTTGA
CCACCACTACTTCGACCTTCCCTCACGAGTCGACCACTGACACCG
Found at i:86229 original size:15 final size:15
Alignment explanation
Indices: 86155--86236 Score: 65
Period size: 18 Copynumber: 4.9 Consensus size: 15
86145 TCTCTGGCCA
*
86155 CCTCTGAGGCTGCTT
1 CCTCCGAGGCTGCTT
86170 CCTCTTCTGAGGCTGCTT
1 CCTC--C-GAGGCTGCTT
*
86188 CGTCGTCGCAGGCTGCTT
1 CCTC--CG-AGGCTGCTT
86206 CTTCTTCCGAGGCTGCTT
1 C--C-TCCGAGGCTGCTT
86224 CCTCCGAGGCTGC
1 CCTCCGAGGCTGC
86237 CTCTACCTCG
Statistics
Matches: 56, Mismatches: 4, Indels: 14
0.76 0.05 0.19
Matches are distributed among these distances:
15 15 0.27
16 1 0.02
17 1 0.02
18 35 0.62
19 2 0.04
21 2 0.04
ACGTcount: A:0.06, C:0.35, G:0.27, T:0.32
Consensus pattern (15 bp):
CCTCCGAGGCTGCTT
Left flanking sequence: Indices 85655 -- 86154
CTACGCCATTGAGGAGTCCCAGACCTTTGTGCTTGAGGACGAGTCGTCGCAGATCTCGGTTGCCG
CTGCCCACGGTGACCAGGCTTTCACCGTGGCTGGCTACGGTGGTGGCAACGTCATTGGTACTGAC
TTGACCATCACCAACTTCGAGTACAACGACGTCACCGGTGTGCTCAAGGTGTGGAACGGTGCCGT
CACCAACGAGTTCAACATTGGTACTGGCTACGTCTACGAGGACTTCTGGCTTGACACCACCAACC
AACCCCTGAAGATCACCAACAACGGTTTGAGATACGTCGGTCCTGTGCCCGATGGTGCTAACAAG
AGCGATGGTTGCATGCCTTGTGAGCCCATCCCCGACTTCCCCACTCCCCTGGAGCTGCTGCTGGC
TGTGTCGTCGCTGACCATGGCTCTGTCCCTGGCTGCTTCTTCTCTGGCTGCCACCTCGCTGGCTG
CGTCTCTGGAGCCCGCCAGCTCTTCGGAGGCCGCCTCTCTGGCCA
Right flanking sequence: Indices 86237 -- 86736
CTCTACCTCGACTGTGCCTCCCGCTGCCTCGGTTCCCGCTTCGTCGGCTGCTGCCTCTTCTGCTG
CTGAGTCGTCTGCTGCTGAGTCTTCCGCTGCTGCCTCTTCTGCTGCTGAGTCGTCTGCTGCTGAG
TCTTCCGCTGCTGAGTCGTCTGCCGCTGAGTCTTCCGCTGCTGCTTCTTCCGCCGCCGAGTCGTC
TGCTGCTGCTTCTTCTGCCGCCGAGTCGTCTGCCGCCGAATCTTCTGCCGCTGCTTCTTCCGGTG
CCGAGTCTTCTGCTGCTGAGTCGTCGGCTCCTGGTGCTACTGACTCTTCTGAGGTGCCCACTGTG
ACTGCTACTGAGTGCCCTGACTGCACTGAGTACACCACTACTTGGACCACCACTGGCACTGACGA
CAAGCCCTCGACCGACTCTGGTGTTGTGATCATCACCACCACTGACGGCTCGTTGACCACCACTA
CTTCGACCTTCCCTCACGAGTCGACCACTGACACCGAGTGCCCCG
Found at i:86301 original size:15 final size:15
Alignment explanation
Indices: 86292--86518 Score: 193
Period size: 15 Copynumber: 15.1 Consensus size: 15
86282 GGCTGCTGCC
86292 TCTTCTGCTGCTGAG
1 TCTTCTGCTGCTGAG
*
86307 TCGTCTGCTGCTGAG
1 TCTTCTGCTGCTGAG
* **
86322 TCTTCCGCTGCTGCC
1 TCTTCTGCTGCTGAG
86337 TCTTCTGCTGCTGAG
1 TCTTCTGCTGCTGAG
*
86352 TCGTCTGCTGCTGAG
1 TCTTCTGCTGCTGAG
*
86367 TCTTCCGCTGCTGAG
1 TCTTCTGCTGCTGAG
* *
86382 TCGTCTGCCGCTGAG
1 TCTTCTGCTGCTGAG
* **
86397 TCTTCCGCTGCTGCT
1 TCTTCTGCTGCTGAG
* * *
86412 TCTTCCGCCGCCGAG
1 TCTTCTGCTGCTGAG
* **
86427 TCGTCTGCTGCTGCT
1 TCTTCTGCTGCTGAG
* *
86442 TCTTCTGCCGCCGAG
1 TCTTCTGCTGCTGAG
* * * *
86457 TCGTCTGCCGCCGAA
1 TCTTCTGCTGCTGAG
* **
86472 TCTTCTGCCGCTGCT
1 TCTTCTGCTGCTGAG
* * *
86487 TCTTCCGGTGCCGAG
1 TCTTCTGCTGCTGAG
86502 TCTTCTGCTGCTGAG
1 TCTTCTGCTGCTGAG
86517 TC
1 TC
86519 GTCGGCTCCT
Statistics
Matches: 163, Mismatches: 49, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
15 163 1.00
ACGTcount: A:0.05, C:0.35, G:0.27, T:0.33
Consensus pattern (15 bp):
TCTTCTGCTGCTGAG
Left flanking sequence: Indices 85792 -- 86291
TCACCAACTTCGAGTACAACGACGTCACCGGTGTGCTCAAGGTGTGGAACGGTGCCGTCACCAAC
GAGTTCAACATTGGTACTGGCTACGTCTACGAGGACTTCTGGCTTGACACCACCAACCAACCCCT
GAAGATCACCAACAACGGTTTGAGATACGTCGGTCCTGTGCCCGATGGTGCTAACAAGAGCGATG
GTTGCATGCCTTGTGAGCCCATCCCCGACTTCCCCACTCCCCTGGAGCTGCTGCTGGCTGTGTCG
TCGCTGACCATGGCTCTGTCCCTGGCTGCTTCTTCTCTGGCTGCCACCTCGCTGGCTGCGTCTCT
GGAGCCCGCCAGCTCTTCGGAGGCCGCCTCTCTGGCCACCTCTGAGGCTGCTTCCTCTTCTGAGG
CTGCTTCGTCGTCGCAGGCTGCTTCTTCTTCCGAGGCTGCTTCCTCCGAGGCTGCCTCTACCTCG
ACTGTGCCTCCCGCTGCCTCGGTTCCCGCTTCGTCGGCTGCTGCC
Right flanking sequence: Indices 86519 -- 87018
GTCGGCTCCTGGTGCTACTGACTCTTCTGAGGTGCCCACTGTGACTGCTACTGAGTGCCCTGACT
GCACTGAGTACACCACTACTTGGACCACCACTGGCACTGACGACAAGCCCTCGACCGACTCTGGT
GTTGTGATCATCACCACCACTGACGGCTCGTTGACCACCACTACTTCGACCTTCCCTCACGAGTC
GACCACTGACACCGAGTGCCCCGACTGCACTGAGTACACCACTACTTGGACCACCACTGGCACTG
ACGACAAGCCCTCGACCGACTCTGGTGTTGTCATCATCACCACCACTGACGGTTCGTTGACCACC
ACCACCTCGACCTTCCCTCACGAGTCGACCACTGACACCGAGTGCCCTGACTGCACTGAGTACAC
CACTACTTGGACTACCACTGGCACCGACGACAAGCCCTCGACCGACTCTGGTGTTGTCATCATCA
CCACCACTGACGGCTCGTTGACCACCACCACCTCGACCTTCCCTC
Found at i:86371 original size:75 final size:75
Alignment explanation
Indices: 86277--86518 Score: 313
Period size: 75 Copynumber: 3.2 Consensus size: 75
86267 GGTTCCCGCT
* ** * *
86277 TCGTCGGCTGCTGCCTCTTCTGCTGCTGAGTCGTCTGCTGCTGAGTCTTCCGCTGCTGCCTCTTC
1 TCGTCTGCTGCTGAGTCTTCTGCTGCTGAGTCGTCTGCCGCTGAGTCTTCCGCTGCTGCTTCTTC
* *
86342 TGCTGCTGAG
66 CGCTGCCGAG
*
86352 TCGTCTGCTGCTGAGTCTTCCGCTGCTGAGTCGTCTGCCGCTGAGTCTTCCGCTGCTGCTTCTTC
1 TCGTCTGCTGCTGAGTCTTCTGCTGCTGAGTCGTCTGCCGCTGAGTCTTCCGCTGCTGCTTCTTC
*
86417 CGCCGCCGAG
66 CGCTGCCGAG
** * * * * * *
86427 TCGTCTGCTGCTGCTTCTTCTGCCGCCGAGTCGTCTGCCGCCGAATCTTCTGCCGCTGCTTCTTC
1 TCGTCTGCTGCTGAGTCTTCTGCTGCTGAGTCGTCTGCCGCTGAGTCTTCCGCTGCTGCTTCTTC
*
86492 CGGTGCCGAG
66 CGCTGCCGAG
*
86502 TCTTCTGCTGCTGAGTC
1 TCGTCTGCTGCTGAGTC
86519 GTCGGCTCCT
Statistics
Matches: 144, Mismatches: 23, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
75 144 1.00
ACGTcount: A:0.05, C:0.35, G:0.27, T:0.33
Consensus pattern (75 bp):
TCGTCTGCTGCTGAGTCTTCTGCTGCTGAGTCGTCTGCCGCTGAGTCTTCCGCTGCTGCTTCTTC
CGCTGCCGAG
Left flanking sequence: Indices 85777 -- 86276
GTACTGACTTGACCATCACCAACTTCGAGTACAACGACGTCACCGGTGTGCTCAAGGTGTGGAAC
GGTGCCGTCACCAACGAGTTCAACATTGGTACTGGCTACGTCTACGAGGACTTCTGGCTTGACAC
CACCAACCAACCCCTGAAGATCACCAACAACGGTTTGAGATACGTCGGTCCTGTGCCCGATGGTG
CTAACAAGAGCGATGGTTGCATGCCTTGTGAGCCCATCCCCGACTTCCCCACTCCCCTGGAGCTG
CTGCTGGCTGTGTCGTCGCTGACCATGGCTCTGTCCCTGGCTGCTTCTTCTCTGGCTGCCACCTC
GCTGGCTGCGTCTCTGGAGCCCGCCAGCTCTTCGGAGGCCGCCTCTCTGGCCACCTCTGAGGCTG
CTTCCTCTTCTGAGGCTGCTTCGTCGTCGCAGGCTGCTTCTTCTTCCGAGGCTGCTTCCTCCGAG
GCTGCCTCTACCTCGACTGTGCCTCCCGCTGCCTCGGTTCCCGCT
Right flanking sequence: Indices 86519 -- 87018
GTCGGCTCCTGGTGCTACTGACTCTTCTGAGGTGCCCACTGTGACTGCTACTGAGTGCCCTGACT
GCACTGAGTACACCACTACTTGGACCACCACTGGCACTGACGACAAGCCCTCGACCGACTCTGGT
GTTGTGATCATCACCACCACTGACGGCTCGTTGACCACCACTACTTCGACCTTCCCTCACGAGTC
GACCACTGACACCGAGTGCCCCGACTGCACTGAGTACACCACTACTTGGACCACCACTGGCACTG
ACGACAAGCCCTCGACCGACTCTGGTGTTGTCATCATCACCACCACTGACGGTTCGTTGACCACC
ACCACCTCGACCTTCCCTCACGAGTCGACCACTGACACCGAGTGCCCTGACTGCACTGAGTACAC
CACTACTTGGACTACCACTGGCACCGACGACAAGCCCTCGACCGACTCTGGTGTTGTCATCATCA
CCACCACTGACGGCTCGTTGACCACCACCACCTCGACCTTCCCTC
Found at i:86817 original size:156 final size:156
Alignment explanation
Indices: 86571--87337 Score: 1174
Period size: 156 Copynumber: 4.9 Consensus size: 156
86561 GACTGCTACT
*
86571 GAGTGCCCTGACTGCACTGAGTACACCACTACTTGGACCACCACTGGCACTGACGACAAGCCCTC
1 GAGTGCCCTGACTGCACTGAGTACACCACTACTTGGACCACCACTGGCACCGACGACAAGCCCTC
* * * *
86636 GACCGACTCTGGTGTTGTGATCATCACCACCACTGACGGCTCGTTGACCACCACTACTTCGACCT
66 GACCGACTCTGGTGTTGTCATCATCACCACCACTGACGGTTCGTTGACCACCACCACCTCGACCT
86701 TCCCTCACGAGTCGACCACTGACACC
131 TCCCTCACGAGTCGACCACTGACACC
* *
86727 GAGTGCCCCGACTGCACTGAGTACACCACTACTTGGACCACCACTGGCACTGACGACAAGCCCTC
1 GAGTGCCCTGACTGCACTGAGTACACCACTACTTGGACCACCACTGGCACCGACGACAAGCCCTC
86792 GACCGACTCTGGTGTTGTCATCATCACCACCACTGACGGTTCGTTGACCACCACCACCTCGACCT
66 GACCGACTCTGGTGTTGTCATCATCACCACCACTGACGGTTCGTTGACCACCACCACCTCGACCT
86857 TCCCTCACGAGTCGACCACTGACACC
131 TCCCTCACGAGTCGACCACTGACACC
*
86883 GAGTGCCCTGACTGCACTGAGTACACCACTACTTGGACTACCACTGGCACCGACGACAAGCCCTC
1 GAGTGCCCTGACTGCACTGAGTACACCACTACTTGGACCACCACTGGCACCGACGACAAGCCCTC
*
86948 GACCGACTCTGGTGTTGTCATCATCACCACCACTGACGGCTCGTTGACCACCACCACCTCGACCT
66 GACCGACTCTGGTGTTGTCATCATCACCACCACTGACGGTTCGTTGACCACCACCACCTCGACCT
87013 TCCCTCACGAGTCGACCACTGACACC
131 TCCCTCACGAGTCGACCACTGACACC
* * *
87039 GAGTGCCCTGACTGCACCGAGTACACCACTACTTGGACCACCACTGGCACCGATGACAAGCCTTC
1 GAGTGCCCTGACTGCACTGAGTACACCACTACTTGGACCACCACTGGCACCGACGACAAGCCCTC
* * * * ** * *
87104 CACTGACTCTGGTGTCGTTATTGTCACCACTACCGACGGTTCGTTGACCACCACCACCTCGACCT
66 GACCGACTCTGGTGTTGTCATCATCACCACCACTGACGGTTCGTTGACCACCACCACCTCGACCT
* * *
87169 TCCCCCACGAGTCGACCACTGCCACT
131 TCCCTCACGAGTCGACCACTGACACC
* * * * * *
87195 GACTGCCCTGAGTGCACCGAGTACACCACCACTTGGACCACCACTGGCACCGATGACAAGCCTTC
1 GAGTGCCCTGACTGCACTGAGTACACCACTACTTGGACCACCACTGGCACCGACGACAAGCCCTC
* * * * ** * * * *
87260 CACTGACTCTGGTGTCGTTATTGTCACCACTACCGACGGTTCGTTGACCACCACCACTTCCACCT
66 GACCGACTCTGGTGTTGTCATCATCACCACCACTGACGGTTCGTTGACCACCACCACCTCGACCT
*
87325 TCCCCCACGAGTC
131 TCCCTCACGAGTC
87338 CGAGTACACC
Statistics
Matches: 581, Mismatches: 30, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
156 581 1.00
ACGTcount: A:0.22, C:0.39, G:0.19, T:0.20
Consensus pattern (156 bp):
GAGTGCCCTGACTGCACTGAGTACACCACTACTTGGACCACCACTGGCACCGACGACAAGCCCTC
GACCGACTCTGGTGTTGTCATCATCACCACCACTGACGGTTCGTTGACCACCACCACCTCGACCT
TCCCTCACGAGTCGACCACTGACACC
Left flanking sequence: Indices 86071 -- 86570
CCCTGGCTGCTTCTTCTCTGGCTGCCACCTCGCTGGCTGCGTCTCTGGAGCCCGCCAGCTCTTCG
GAGGCCGCCTCTCTGGCCACCTCTGAGGCTGCTTCCTCTTCTGAGGCTGCTTCGTCGTCGCAGGC
TGCTTCTTCTTCCGAGGCTGCTTCCTCCGAGGCTGCCTCTACCTCGACTGTGCCTCCCGCTGCCT
CGGTTCCCGCTTCGTCGGCTGCTGCCTCTTCTGCTGCTGAGTCGTCTGCTGCTGAGTCTTCCGCT
GCTGCCTCTTCTGCTGCTGAGTCGTCTGCTGCTGAGTCTTCCGCTGCTGAGTCGTCTGCCGCTGA
GTCTTCCGCTGCTGCTTCTTCCGCCGCCGAGTCGTCTGCTGCTGCTTCTTCTGCCGCCGAGTCGT
CTGCCGCCGAATCTTCTGCCGCTGCTTCTTCCGGTGCCGAGTCTTCTGCTGCTGAGTCGTCGGCT
CCTGGTGCTACTGACTCTTCTGAGGTGCCCACTGTGACTGCTACT
Right flanking sequence: Indices 87338 -- 87837
CGAGTACACCACCACCTGGACCACCACTGGTACTGATGGCAAGCCCACTACTGAGTCTGGTGTGG
TTGACATCACCACCAACCCCGAGGGCGAGTTGACTACCTCTACCTCCACCTTCCCCTCCGAGCCC
CTGTCTACTGAGTACACCACTACCTGGACCTCCACGGACGGCAACGGCAACCCCGTGACCGAGTC
CGGTGTTGTGGGTGTCTCTACTGACTCTGAGGGTGACTGGACCACCGGTACCCTGACCTTCCCTC
ACGCTACCACCGACGACTCTGAGACCCCCTCGTGGGTCACTGTGTACGTCACCCCTACTGCTGGC
ACTGGTAACGGTGACGGTAACGGCGACGGCAACGGTAACGGTGACGGTAACGGTGACGGTTCTGA
CAACGGTTCTGACAACGGTGACGGTAACGGTGACGGTTCTGACAACGGTTCTGACAACGGTGACG
GCTCCGACAACGGCAACGGCAACGGTGAAGGCTCCGACAACGGTG
Found at i:87153 original size:75 final size:75
Alignment explanation
Indices: 87074--87313 Score: 170
Period size: 75 Copynumber: 3.1 Consensus size: 75
87064 CCACTACTTG
87074 GACCACCACTGGCACCGATGACAAGCCTTCCACTGACTCTGGTGTCGTTATTGTCACCACTACCG
1 GACCACCACTGGCACCGATGACAAGCCTTCCACTGACTCTGGTGTCGTTATTGTCACCACTACCG
87139 ACGGTTCGTT
66 ACGGTTCGTT
* * * ** * * * * * * *
87149 GACCACCAC---CACCTCGACCTTCCCCCACGAGTCGACCACTGCCACTGACTGCCCTGAGTG-C
1 GACCACCACTGGCA-C-CGA---T----GACAAGCCTTCCACTGACTCTG-GTGTCGTTATTGTC
* * **
87210 ACCGAGTACACCAC--CAC-TT
56 ACC-ACTAC-CGACGGTTCGTT
87229 GGACCACCACTGGCACCGATGACAAGCCTTCCACTGACTCTGGTGTCGTTATTGTCACCACTACC
1 -GACCACCACTGGCACCGATGACAAGCCTTCCACTGACTCTGGTGTCGTTATTGTCACCACTACC
87294 GACGGTTCGTT
65 GACGGTTCGTT
87305 GACCACCAC
1 GACCACCAC
87314 CACTTCCACC
Statistics
Matches: 113, Mismatches: 32, Indels: 40
0.61 0.17 0.22
Matches are distributed among these distances:
72 2 0.02
73 4 0.04
74 14 0.12
75 38 0.34
76 2 0.02
77 1 0.01
79 1 0.01
80 2 0.02
81 29 0.26
82 14 0.12
83 4 0.04
84 2 0.02
ACGTcount: A:0.21, C:0.38, G:0.20, T:0.21
Consensus pattern (75 bp):
GACCACCACTGGCACCGATGACAAGCCTTCCACTGACTCTGGTGTCGTTATTGTCACCACTACCG
ACGGTTCGTT
Left flanking sequence: Indices 86574 -- 87073
TGCCCTGACTGCACTGAGTACACCACTACTTGGACCACCACTGGCACTGACGACAAGCCCTCGAC
CGACTCTGGTGTTGTGATCATCACCACCACTGACGGCTCGTTGACCACCACTACTTCGACCTTCC
CTCACGAGTCGACCACTGACACCGAGTGCCCCGACTGCACTGAGTACACCACTACTTGGACCACC
ACTGGCACTGACGACAAGCCCTCGACCGACTCTGGTGTTGTCATCATCACCACCACTGACGGTTC
GTTGACCACCACCACCTCGACCTTCCCTCACGAGTCGACCACTGACACCGAGTGCCCTGACTGCA
CTGAGTACACCACTACTTGGACTACCACTGGCACCGACGACAAGCCCTCGACCGACTCTGGTGTT
GTCATCATCACCACCACTGACGGCTCGTTGACCACCACCACCTCGACCTTCCCTCACGAGTCGAC
CACTGACACCGAGTGCCCTGACTGCACCGAGTACACCACTACTTG
Right flanking sequence: Indices 87314 -- 87813
CACTTCCACCTTCCCCCACGAGTCCGAGTACACCACCACCTGGACCACCACTGGTACTGATGGCA
AGCCCACTACTGAGTCTGGTGTGGTTGACATCACCACCAACCCCGAGGGCGAGTTGACTACCTCT
ACCTCCACCTTCCCCTCCGAGCCCCTGTCTACTGAGTACACCACTACCTGGACCTCCACGGACGG
CAACGGCAACCCCGTGACCGAGTCCGGTGTTGTGGGTGTCTCTACTGACTCTGAGGGTGACTGGA
CCACCGGTACCCTGACCTTCCCTCACGCTACCACCGACGACTCTGAGACCCCCTCGTGGGTCACT
GTGTACGTCACCCCTACTGCTGGCACTGGTAACGGTGACGGTAACGGCGACGGCAACGGTAACGG
TGACGGTAACGGTGACGGTTCTGACAACGGTTCTGACAACGGTGACGGTAACGGTGACGGTTCTG
ACAACGGTTCTGACAACGGTGACGGCTCCGACAACGGCAACGGCA
Found at i:87315 original size:78 final size:78
Alignment explanation
Indices: 87075--87317 Score: 187
Period size: 78 Copynumber: 3.1 Consensus size: 78
87065 CACTACTTGG
87075 ACCACCACTGGCACCGATGACAAGCCTTCCACTGACTCTGGTGTCGTTATTGTCACCACTACCGA
1 ACCACCACTGGCACCGATGACAAGCCTTCCACTGACTCTGGTGTCGTTATTGTCACCACTACCGA
87140 CGGTTCGTTGACC
66 CGGTTCGTTGACC
* * * * * ** * * * * * * *
87153 ACCACCACCTCG-ACC-TTCCCCCACGAGTCGACCACTGCCACTGACTGCCCTGAGTG-CACCGA
1 ACCACCA-CTGGCACCGAT----GACAAGCCTTCCACTGACTCTG-GTGTCGTTATTGTCACC-A
* * ** *
87215 GTACACCAC--CAC-TTG--G
59 CTAC-CGACGGTTCGTTGACC
87231 ACCACCACTGGCACCGATGACAAGCCTTCCACTGACTCTGGTGTCGTTATTGTCACCACTACCGA
1 ACCACCACTGGCACCGATGACAAGCCTTCCACTGACTCTGGTGTCGTTATTGTCACCACTACCGA
87296 CGGTTCGTTGACC
66 CGGTTCGTTGACC
87309 ACCACCACT
1 ACCACCACT
87318 TCCACCTTCC
Statistics
Matches: 111, Mismatches: 38, Indels: 32
0.61 0.21 0.18
Matches are distributed among these distances:
73 3 0.03
74 11 0.10
75 20 0.18
76 3 0.03
77 4 0.04
78 29 0.26
79 4 0.04
80 3 0.03
81 20 0.18
82 11 0.10
83 3 0.03
ACGTcount: A:0.21, C:0.39, G:0.19, T:0.21
Consensus pattern (78 bp):
ACCACCACTGGCACCGATGACAAGCCTTCCACTGACTCTGGTGTCGTTATTGTCACCACTACCGA
CGGTTCGTTGACC
Left flanking sequence: Indices 86575 -- 87074
GCCCTGACTGCACTGAGTACACCACTACTTGGACCACCACTGGCACTGACGACAAGCCCTCGACC
GACTCTGGTGTTGTGATCATCACCACCACTGACGGCTCGTTGACCACCACTACTTCGACCTTCCC
TCACGAGTCGACCACTGACACCGAGTGCCCCGACTGCACTGAGTACACCACTACTTGGACCACCA
CTGGCACTGACGACAAGCCCTCGACCGACTCTGGTGTTGTCATCATCACCACCACTGACGGTTCG
TTGACCACCACCACCTCGACCTTCCCTCACGAGTCGACCACTGACACCGAGTGCCCTGACTGCAC
TGAGTACACCACTACTTGGACTACCACTGGCACCGACGACAAGCCCTCGACCGACTCTGGTGTTG
TCATCATCACCACCACTGACGGCTCGTTGACCACCACCACCTCGACCTTCCCTCACGAGTCGACC
ACTGACACCGAGTGCCCTGACTGCACCGAGTACACCACTACTTGG
Right flanking sequence: Indices 87318 -- 87817
TCCACCTTCCCCCACGAGTCCGAGTACACCACCACCTGGACCACCACTGGTACTGATGGCAAGCC
CACTACTGAGTCTGGTGTGGTTGACATCACCACCAACCCCGAGGGCGAGTTGACTACCTCTACCT
CCACCTTCCCCTCCGAGCCCCTGTCTACTGAGTACACCACTACCTGGACCTCCACGGACGGCAAC
GGCAACCCCGTGACCGAGTCCGGTGTTGTGGGTGTCTCTACTGACTCTGAGGGTGACTGGACCAC
CGGTACCCTGACCTTCCCTCACGCTACCACCGACGACTCTGAGACCCCCTCGTGGGTCACTGTGT
ACGTCACCCCTACTGCTGGCACTGGTAACGGTGACGGTAACGGCGACGGCAACGGTAACGGTGAC
GGTAACGGTGACGGTTCTGACAACGGTTCTGACAACGGTGACGGTAACGGTGACGGTTCTGACAA
CGGTTCTGACAACGGTGACGGCTCCGACAACGGCAACGGCAACGG
Found at i:87679 original size:6 final size:6
Alignment explanation
Indices: 87666--87722 Score: 60
Period size: 6 Copynumber: 9.5 Consensus size: 6
87656 TGCTGGCACT
* ** * *
87666 GGTAAC GGTGAC GGTAAC GGCGAC GGCAAC GGTAAC GGTGAC GGTAAC
1 GGTAAC GGTAAC GGTAAC GGTAAC GGTAAC GGTAAC GGTAAC GGTAAC
*
87714 GGTGAC GGT
1 GGTAAC GGT
87723 TCTGACAACG
Statistics
Matches: 42, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
6 42 1.00
ACGTcount: A:0.25, C:0.19, G:0.42, T:0.14
Consensus pattern (6 bp):
GGTAAC
Left flanking sequence: Indices 87166 -- 87665
CCTTCCCCCACGAGTCGACCACTGCCACTGACTGCCCTGAGTGCACCGAGTACACCACCACTTGG
ACCACCACTGGCACCGATGACAAGCCTTCCACTGACTCTGGTGTCGTTATTGTCACCACTACCGA
CGGTTCGTTGACCACCACCACTTCCACCTTCCCCCACGAGTCCGAGTACACCACCACCTGGACCA
CCACTGGTACTGATGGCAAGCCCACTACTGAGTCTGGTGTGGTTGACATCACCACCAACCCCGAG
GGCGAGTTGACTACCTCTACCTCCACCTTCCCCTCCGAGCCCCTGTCTACTGAGTACACCACTAC
CTGGACCTCCACGGACGGCAACGGCAACCCCGTGACCGAGTCCGGTGTTGTGGGTGTCTCTACTG
ACTCTGAGGGTGACTGGACCACCGGTACCCTGACCTTCCCTCACGCTACCACCGACGACTCTGAG
ACCCCCTCGTGGGTCACTGTGTACGTCACCCCTACTGCTGGCACT
Right flanking sequence: Indices 87723 -- 88222
TCTGACAACGGTTCTGACAACGGTGACGGTAACGGTGACGGTTCTGACAACGGTTCTGACAACGG
TGACGGCTCCGACAACGGCAACGGCAACGGTGAAGGCTCCGACAACGGTGAGGGCTCTGGCAACG
GCGCTGACAACGGTGATGGCTCCGACTCTGGTGCTGACAACGGTGACGGCTCCGACTCTGGTGCC
GACAACGGTTCCGACAACGGTGACGGGTCCAACAACGGCGCTGACAACGGCGACGGCTCTGACTC
CGACTCTGGTGCCAACTCTGGCTCCGGTGCTGGTGAGTCCGGTGAGGGCTCTGGTGCCGACTCTG
GTGCTGACACCGGCTCCGACTCTACTGACAACTCCGGTGCCGACTCTGGTGCCGACGCTGTCCCC
CCTATCGTTTCCACTGGTGGCGCTGGTGCCACTAAGCCCTCGATGATGGTGGCTGCCGCCGTCGT
TGCCCTTTTGGCTCTCTAATACCCTTTCTAGCCCACGGGCTCTAT
Found at i:87722 original size:18 final size:18
Alignment explanation
Indices: 87670--87722 Score: 70
Period size: 18 Copynumber: 2.9 Consensus size: 18
87660 GGCACTGGTA
* *
87670 ACGGTGACGGTAACGGCG
1 ACGGTAACGGTAACGGTG
*
87688 ACGGCAACGGTAACGGTG
1 ACGGTAACGGTAACGGTG
*
87706 ACGGTAACGGTGACGGT
1 ACGGTAACGGTAACGGT
87723 TCTGACAACG
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 30 1.00
ACGTcount: A:0.25, C:0.21, G:0.42, T:0.13
Consensus pattern (18 bp):
ACGGTAACGGTAACGGTG
Left flanking sequence: Indices 87170 -- 87669
CCCCCACGAGTCGACCACTGCCACTGACTGCCCTGAGTGCACCGAGTACACCACCACTTGGACCA
CCACTGGCACCGATGACAAGCCTTCCACTGACTCTGGTGTCGTTATTGTCACCACTACCGACGGT
TCGTTGACCACCACCACTTCCACCTTCCCCCACGAGTCCGAGTACACCACCACCTGGACCACCAC
TGGTACTGATGGCAAGCCCACTACTGAGTCTGGTGTGGTTGACATCACCACCAACCCCGAGGGCG
AGTTGACTACCTCTACCTCCACCTTCCCCTCCGAGCCCCTGTCTACTGAGTACACCACTACCTGG
ACCTCCACGGACGGCAACGGCAACCCCGTGACCGAGTCCGGTGTTGTGGGTGTCTCTACTGACTC
TGAGGGTGACTGGACCACCGGTACCCTGACCTTCCCTCACGCTACCACCGACGACTCTGAGACCC
CCTCGTGGGTCACTGTGTACGTCACCCCTACTGCTGGCACTGGTA
Right flanking sequence: Indices 87723 -- 88222
TCTGACAACGGTTCTGACAACGGTGACGGTAACGGTGACGGTTCTGACAACGGTTCTGACAACGG
TGACGGCTCCGACAACGGCAACGGCAACGGTGAAGGCTCCGACAACGGTGAGGGCTCTGGCAACG
GCGCTGACAACGGTGATGGCTCCGACTCTGGTGCTGACAACGGTGACGGCTCCGACTCTGGTGCC
GACAACGGTTCCGACAACGGTGACGGGTCCAACAACGGCGCTGACAACGGCGACGGCTCTGACTC
CGACTCTGGTGCCAACTCTGGCTCCGGTGCTGGTGAGTCCGGTGAGGGCTCTGGTGCCGACTCTG
GTGCTGACACCGGCTCCGACTCTACTGACAACTCCGGTGCCGACTCTGGTGCCGACGCTGTCCCC
CCTATCGTTTCCACTGGTGGCGCTGGTGCCACTAAGCCCTCGATGATGGTGGCTGCCGCCGTCGT
TGCCCTTTTGGCTCTCTAATACCCTTTCTAGCCCACGGGCTCTAT
Found at i:87733 original size:12 final size:12
Alignment explanation
Indices: 87718--87788 Score: 61
Period size: 12 Copynumber: 5.4 Consensus size: 12
87708 GGTAACGGTG
87718 ACGGTTCTGACA
1 ACGGTTCTGACA
87730 ACGGTTCTGACA
1 ACGGTTCTGACA
* * *
87742 ACGGTGACGGTAACGGTG
1 ACGGT-TC--TGAC---A
87760 ACGGTTCTGACA
1 ACGGTTCTGACA
87772 ACGGTTCTGACA
1 ACGGTTCTGACA
87784 ACGGT
1 ACGGT
87789 GACGGCTCCG
Statistics
Matches: 47, Mismatches: 6, Indels: 12
0.72 0.09 0.18
Matches are distributed among these distances:
12 34 0.72
13 1 0.02
15 6 0.13
17 1 0.02
18 5 0.11
ACGTcount: A:0.24, C:0.23, G:0.31, T:0.23
Consensus pattern (12 bp):
ACGGTTCTGACA
Left flanking sequence: Indices 87218 -- 87717
CACCACCACTTGGACCACCACTGGCACCGATGACAAGCCTTCCACTGACTCTGGTGTCGTTATTG
TCACCACTACCGACGGTTCGTTGACCACCACCACTTCCACCTTCCCCCACGAGTCCGAGTACACC
ACCACCTGGACCACCACTGGTACTGATGGCAAGCCCACTACTGAGTCTGGTGTGGTTGACATCAC
CACCAACCCCGAGGGCGAGTTGACTACCTCTACCTCCACCTTCCCCTCCGAGCCCCTGTCTACTG
AGTACACCACTACCTGGACCTCCACGGACGGCAACGGCAACCCCGTGACCGAGTCCGGTGTTGTG
GGTGTCTCTACTGACTCTGAGGGTGACTGGACCACCGGTACCCTGACCTTCCCTCACGCTACCAC
CGACGACTCTGAGACCCCCTCGTGGGTCACTGTGTACGTCACCCCTACTGCTGGCACTGGTAACG
GTGACGGTAACGGCGACGGCAACGGTAACGGTGACGGTAACGGTG
Right flanking sequence: Indices 87789 -- 88288
GACGGCTCCGACAACGGCAACGGCAACGGTGAAGGCTCCGACAACGGTGAGGGCTCTGGCAACGG
CGCTGACAACGGTGATGGCTCCGACTCTGGTGCTGACAACGGTGACGGCTCCGACTCTGGTGCCG
ACAACGGTTCCGACAACGGTGACGGGTCCAACAACGGCGCTGACAACGGCGACGGCTCTGACTCC
GACTCTGGTGCCAACTCTGGCTCCGGTGCTGGTGAGTCCGGTGAGGGCTCTGGTGCCGACTCTGG
TGCTGACACCGGCTCCGACTCTACTGACAACTCCGGTGCCGACTCTGGTGCCGACGCTGTCCCCC
CTATCGTTTCCACTGGTGGCGCTGGTGCCACTAAGCCCTCGATGATGGTGGCTGCCGCCGTCGTT
GCCCTTTTGGCTCTCTAATACCCTTTCTAGCCCACGGGCTCTATATTTCGGTCTATTTATTTAAG
GAATCCATTCAATCGTCCATTCAACCTGTGTAAGAAGATTTGTTT
Found at i:87745 original size:42 final size:42
Alignment explanation
Indices: 87699--87793 Score: 190
Period size: 42 Copynumber: 2.3 Consensus size: 42
87689 CGGCAACGGT
87699 AACGGTGACGGTAACGGTGACGGTTCTGACAACGGTTCTGAC
1 AACGGTGACGGTAACGGTGACGGTTCTGACAACGGTTCTGAC
87741 AACGGTGACGGTAACGGTGACGGTTCTGACAACGGTTCTGAC
1 AACGGTGACGGTAACGGTGACGGTTCTGACAACGGTTCTGAC
87783 AACGGTGACGG
1 AACGGTGACGG
87794 CTCCGACAAC
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 53 1.00
ACGTcount: A:0.24, C:0.21, G:0.35, T:0.20
Consensus pattern (42 bp):
AACGGTGACGGTAACGGTGACGGTTCTGACAACGGTTCTGAC
Left flanking sequence: Indices 87199 -- 87698
GCCCTGAGTGCACCGAGTACACCACCACTTGGACCACCACTGGCACCGATGACAAGCCTTCCACT
GACTCTGGTGTCGTTATTGTCACCACTACCGACGGTTCGTTGACCACCACCACTTCCACCTTCCC
CCACGAGTCCGAGTACACCACCACCTGGACCACCACTGGTACTGATGGCAAGCCCACTACTGAGT
CTGGTGTGGTTGACATCACCACCAACCCCGAGGGCGAGTTGACTACCTCTACCTCCACCTTCCCC
TCCGAGCCCCTGTCTACTGAGTACACCACTACCTGGACCTCCACGGACGGCAACGGCAACCCCGT
GACCGAGTCCGGTGTTGTGGGTGTCTCTACTGACTCTGAGGGTGACTGGACCACCGGTACCCTGA
CCTTCCCTCACGCTACCACCGACGACTCTGAGACCCCCTCGTGGGTCACTGTGTACGTCACCCCT
ACTGCTGGCACTGGTAACGGTGACGGTAACGGCGACGGCAACGGT
Right flanking sequence: Indices 87794 -- 88293
CTCCGACAACGGCAACGGCAACGGTGAAGGCTCCGACAACGGTGAGGGCTCTGGCAACGGCGCTG
ACAACGGTGATGGCTCCGACTCTGGTGCTGACAACGGTGACGGCTCCGACTCTGGTGCCGACAAC
GGTTCCGACAACGGTGACGGGTCCAACAACGGCGCTGACAACGGCGACGGCTCTGACTCCGACTC
TGGTGCCAACTCTGGCTCCGGTGCTGGTGAGTCCGGTGAGGGCTCTGGTGCCGACTCTGGTGCTG
ACACCGGCTCCGACTCTACTGACAACTCCGGTGCCGACTCTGGTGCCGACGCTGTCCCCCCTATC
GTTTCCACTGGTGGCGCTGGTGCCACTAAGCCCTCGATGATGGTGGCTGCCGCCGTCGTTGCCCT
TTTGGCTCTCTAATACCCTTTCTAGCCCACGGGCTCTATATTTCGGTCTATTTATTTAAGGAATC
CATTCAATCGTCCATTCAACCTGTGTAAGAAGATTTGTTTAAGGG
Found at i:87764 original size:30 final size:30
Alignment explanation
Indices: 87738--87838 Score: 114
Period size: 30 Copynumber: 3.4 Consensus size: 30
87728 CAACGGTTCT
* * *
87738 GACAACGGTGACGGTAACGGTGACGGTTCT
1 GACAACGGTGACGGCAACGGTGACGGCTCC
* *
87768 GACAACGGT-TCTGACAACGGTGACGGCTCC
1 GACAACGGTGAC-GGCAACGGTGACGGCTCC
** *
87798 GACAACGGCAACGGCAACGGTGAAGGCTCC
1 GACAACGGTGACGGCAACGGTGACGGCTCC
87828 GACAACGGTGA
1 GACAACGGTGA
87839 GGGCTCTGGC
Statistics
Matches: 58, Mismatches: 11, Indels: 4
0.79 0.15 0.05
Matches are distributed among these distances:
29 1 0.02
30 56 0.97
31 1 0.02
ACGTcount: A:0.27, C:0.26, G:0.34, T:0.14
Consensus pattern (30 bp):
GACAACGGTGACGGCAACGGTGACGGCTCC
Left flanking sequence: Indices 87238 -- 87737
CTGGCACCGATGACAAGCCTTCCACTGACTCTGGTGTCGTTATTGTCACCACTACCGACGGTTCG
TTGACCACCACCACTTCCACCTTCCCCCACGAGTCCGAGTACACCACCACCTGGACCACCACTGG
TACTGATGGCAAGCCCACTACTGAGTCTGGTGTGGTTGACATCACCACCAACCCCGAGGGCGAGT
TGACTACCTCTACCTCCACCTTCCCCTCCGAGCCCCTGTCTACTGAGTACACCACTACCTGGACC
TCCACGGACGGCAACGGCAACCCCGTGACCGAGTCCGGTGTTGTGGGTGTCTCTACTGACTCTGA
GGGTGACTGGACCACCGGTACCCTGACCTTCCCTCACGCTACCACCGACGACTCTGAGACCCCCT
CGTGGGTCACTGTGTACGTCACCCCTACTGCTGGCACTGGTAACGGTGACGGTAACGGCGACGGC
AACGGTAACGGTGACGGTAACGGTGACGGTTCTGACAACGGTTCT
Right flanking sequence: Indices 87839 -- 88338
GGGCTCTGGCAACGGCGCTGACAACGGTGATGGCTCCGACTCTGGTGCTGACAACGGTGACGGCT
CCGACTCTGGTGCCGACAACGGTTCCGACAACGGTGACGGGTCCAACAACGGCGCTGACAACGGC
GACGGCTCTGACTCCGACTCTGGTGCCAACTCTGGCTCCGGTGCTGGTGAGTCCGGTGAGGGCTC
TGGTGCCGACTCTGGTGCTGACACCGGCTCCGACTCTACTGACAACTCCGGTGCCGACTCTGGTG
CCGACGCTGTCCCCCCTATCGTTTCCACTGGTGGCGCTGGTGCCACTAAGCCCTCGATGATGGTG
GCTGCCGCCGTCGTTGCCCTTTTGGCTCTCTAATACCCTTTCTAGCCCACGGGCTCTATATTTCG
GTCTATTTATTTAAGGAATCCATTCAATCGTCCATTCAACCTGTGTAAGAAGATTTGTTTAAGGG
AAAGTCTCAGAACCAGCAACCGAGCCCTTTTTTCGTCAAAACACT
Found at i:87811 original size:18 final size:18
Alignment explanation
Indices: 87770--87812 Score: 50
Period size: 18 Copynumber: 2.4 Consensus size: 18
87760 ACGGTTCTGA
* *
87770 CAACGGTTCTGACAACGG
1 CAACGGCTCCGACAACGG
**
87788 TGACGGCTCCGACAACGG
1 CAACGGCTCCGACAACGG
87806 CAACGGC
1 CAACGGC
87813 AACGGTGAAG
Statistics
Matches: 19, Mismatches: 6, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.26, C:0.33, G:0.30, T:0.12
Consensus pattern (18 bp):
CAACGGCTCCGACAACGG
Left flanking sequence: Indices 87270 -- 87769
GGTGTCGTTATTGTCACCACTACCGACGGTTCGTTGACCACCACCACTTCCACCTTCCCCCACGA
GTCCGAGTACACCACCACCTGGACCACCACTGGTACTGATGGCAAGCCCACTACTGAGTCTGGTG
TGGTTGACATCACCACCAACCCCGAGGGCGAGTTGACTACCTCTACCTCCACCTTCCCCTCCGAG
CCCCTGTCTACTGAGTACACCACTACCTGGACCTCCACGGACGGCAACGGCAACCCCGTGACCGA
GTCCGGTGTTGTGGGTGTCTCTACTGACTCTGAGGGTGACTGGACCACCGGTACCCTGACCTTCC
CTCACGCTACCACCGACGACTCTGAGACCCCCTCGTGGGTCACTGTGTACGTCACCCCTACTGCT
GGCACTGGTAACGGTGACGGTAACGGCGACGGCAACGGTAACGGTGACGGTAACGGTGACGGTTC
TGACAACGGTTCTGACAACGGTGACGGTAACGGTGACGGTTCTGA
Right flanking sequence: Indices 87813 -- 88312
AACGGTGAAGGCTCCGACAACGGTGAGGGCTCTGGCAACGGCGCTGACAACGGTGATGGCTCCGA
CTCTGGTGCTGACAACGGTGACGGCTCCGACTCTGGTGCCGACAACGGTTCCGACAACGGTGACG
GGTCCAACAACGGCGCTGACAACGGCGACGGCTCTGACTCCGACTCTGGTGCCAACTCTGGCTCC
GGTGCTGGTGAGTCCGGTGAGGGCTCTGGTGCCGACTCTGGTGCTGACACCGGCTCCGACTCTAC
TGACAACTCCGGTGCCGACTCTGGTGCCGACGCTGTCCCCCCTATCGTTTCCACTGGTGGCGCTG
GTGCCACTAAGCCCTCGATGATGGTGGCTGCCGCCGTCGTTGCCCTTTTGGCTCTCTAATACCCT
TTCTAGCCCACGGGCTCTATATTTCGGTCTATTTATTTAAGGAATCCATTCAATCGTCCATTCAA
CCTGTGTAAGAAGATTTGTTTAAGGGAAAGTCTCAGAACCAGCAA
Found at i:87836 original size:48 final size:48
Alignment explanation
Indices: 87780--87878 Score: 128
Period size: 48 Copynumber: 2.1 Consensus size: 48
87770 CAACGGTTCT
*
87780 GACAACGGTGACGGCTCCGACAACGGCAAC-GGCAACGGTGAAGGCTCC
1 GACAACGGTGACGGCTCCGACAACGGC-ACTGACAACGGTGAAGGCTCC
* * * * *
87828 GACAACGGTGAGGGCTCTGGCAACGGCGCTGACAACGGTGATGGCTCC
1 GACAACGGTGACGGCTCCGACAACGGCACTGACAACGGTGAAGGCTCC
87876 GAC
1 GAC
87879 TCTGGTGCTG
Statistics
Matches: 44, Mismatches: 6, Indels: 2
0.85 0.12 0.04
Matches are distributed among these distances:
47 1 0.02
48 43 0.98
ACGTcount: A:0.24, C:0.29, G:0.35, T:0.11
Consensus pattern (48 bp):
GACAACGGTGACGGCTCCGACAACGGCACTGACAACGGTGAAGGCTCC
Left flanking sequence: Indices 87280 -- 87779
TTGTCACCACTACCGACGGTTCGTTGACCACCACCACTTCCACCTTCCCCCACGAGTCCGAGTAC
ACCACCACCTGGACCACCACTGGTACTGATGGCAAGCCCACTACTGAGTCTGGTGTGGTTGACAT
CACCACCAACCCCGAGGGCGAGTTGACTACCTCTACCTCCACCTTCCCCTCCGAGCCCCTGTCTA
CTGAGTACACCACTACCTGGACCTCCACGGACGGCAACGGCAACCCCGTGACCGAGTCCGGTGTT
GTGGGTGTCTCTACTGACTCTGAGGGTGACTGGACCACCGGTACCCTGACCTTCCCTCACGCTAC
CACCGACGACTCTGAGACCCCCTCGTGGGTCACTGTGTACGTCACCCCTACTGCTGGCACTGGTA
ACGGTGACGGTAACGGCGACGGCAACGGTAACGGTGACGGTAACGGTGACGGTTCTGACAACGGT
TCTGACAACGGTGACGGTAACGGTGACGGTTCTGACAACGGTTCT
Right flanking sequence: Indices 87879 -- 88378
TCTGGTGCTGACAACGGTGACGGCTCCGACTCTGGTGCCGACAACGGTTCCGACAACGGTGACGG
GTCCAACAACGGCGCTGACAACGGCGACGGCTCTGACTCCGACTCTGGTGCCAACTCTGGCTCCG
GTGCTGGTGAGTCCGGTGAGGGCTCTGGTGCCGACTCTGGTGCTGACACCGGCTCCGACTCTACT
GACAACTCCGGTGCCGACTCTGGTGCCGACGCTGTCCCCCCTATCGTTTCCACTGGTGGCGCTGG
TGCCACTAAGCCCTCGATGATGGTGGCTGCCGCCGTCGTTGCCCTTTTGGCTCTCTAATACCCTT
TCTAGCCCACGGGCTCTATATTTCGGTCTATTTATTTAAGGAATCCATTCAATCGTCCATTCAAC
CTGTGTAAGAAGATTTGTTTAAGGGAAAGTCTCAGAACCAGCAACCGAGCCCTTTTTTCGTCAAA
ACACTCGCACACCATACCCTGTTTTCGTAACCCTTTTCTTGGCCA
Found at i:87851 original size:18 final size:18
Alignment explanation
Indices: 87809--87853 Score: 63
Period size: 18 Copynumber: 2.5 Consensus size: 18
87799 ACAACGGCAA
87809 CGGCAACGGTGAAGGCTC
1 CGGCAACGGTGAAGGCTC
* *
87827 CGACAACGGTGAGGGCTC
1 CGGCAACGGTGAAGGCTC
*
87845 TGGCAACGG
1 CGGCAACGG
87854 CGCTGACAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.22, C:0.27, G:0.40, T:0.11
Consensus pattern (18 bp):
CGGCAACGGTGAAGGCTC
Left flanking sequence: Indices 87309 -- 87808
ACCACCACTTCCACCTTCCCCCACGAGTCCGAGTACACCACCACCTGGACCACCACTGGTACTGA
TGGCAAGCCCACTACTGAGTCTGGTGTGGTTGACATCACCACCAACCCCGAGGGCGAGTTGACTA
CCTCTACCTCCACCTTCCCCTCCGAGCCCCTGTCTACTGAGTACACCACTACCTGGACCTCCACG
GACGGCAACGGCAACCCCGTGACCGAGTCCGGTGTTGTGGGTGTCTCTACTGACTCTGAGGGTGA
CTGGACCACCGGTACCCTGACCTTCCCTCACGCTACCACCGACGACTCTGAGACCCCCTCGTGGG
TCACTGTGTACGTCACCCCTACTGCTGGCACTGGTAACGGTGACGGTAACGGCGACGGCAACGGT
AACGGTGACGGTAACGGTGACGGTTCTGACAACGGTTCTGACAACGGTGACGGTAACGGTGACGG
TTCTGACAACGGTTCTGACAACGGTGACGGCTCCGACAACGGCAA
Right flanking sequence: Indices 87854 -- 88353
CGCTGACAACGGTGATGGCTCCGACTCTGGTGCTGACAACGGTGACGGCTCCGACTCTGGTGCCG
ACAACGGTTCCGACAACGGTGACGGGTCCAACAACGGCGCTGACAACGGCGACGGCTCTGACTCC
GACTCTGGTGCCAACTCTGGCTCCGGTGCTGGTGAGTCCGGTGAGGGCTCTGGTGCCGACTCTGG
TGCTGACACCGGCTCCGACTCTACTGACAACTCCGGTGCCGACTCTGGTGCCGACGCTGTCCCCC
CTATCGTTTCCACTGGTGGCGCTGGTGCCACTAAGCCCTCGATGATGGTGGCTGCCGCCGTCGTT
GCCCTTTTGGCTCTCTAATACCCTTTCTAGCCCACGGGCTCTATATTTCGGTCTATTTATTTAAG
GAATCCATTCAATCGTCCATTCAACCTGTGTAAGAAGATTTGTTTAAGGGAAAGTCTCAGAACCA
GCAACCGAGCCCTTTTTTCGTCAAAACACTCGCACACCATACCCT
Found at i:87889 original size:30 final size:30
Alignment explanation
Indices: 87855--87926 Score: 126
Period size: 30 Copynumber: 2.4 Consensus size: 30
87845 TGGCAACGGC
*
87855 GCTGACAACGGTGATGGCTCCGACTCTGGT
1 GCTGACAACGGTGACGGCTCCGACTCTGGT
87885 GCTGACAACGGTGACGGCTCCGACTCTGGT
1 GCTGACAACGGTGACGGCTCCGACTCTGGT
*
87915 GCCGACAACGGT
1 GCTGACAACGGT
87927 TCCGACAACG
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
30 40 1.00
ACGTcount: A:0.18, C:0.29, G:0.33, T:0.19
Consensus pattern (30 bp):
GCTGACAACGGTGACGGCTCCGACTCTGGT
Left flanking sequence: Indices 87355 -- 87854
GGACCACCACTGGTACTGATGGCAAGCCCACTACTGAGTCTGGTGTGGTTGACATCACCACCAAC
CCCGAGGGCGAGTTGACTACCTCTACCTCCACCTTCCCCTCCGAGCCCCTGTCTACTGAGTACAC
CACTACCTGGACCTCCACGGACGGCAACGGCAACCCCGTGACCGAGTCCGGTGTTGTGGGTGTCT
CTACTGACTCTGAGGGTGACTGGACCACCGGTACCCTGACCTTCCCTCACGCTACCACCGACGAC
TCTGAGACCCCCTCGTGGGTCACTGTGTACGTCACCCCTACTGCTGGCACTGGTAACGGTGACGG
TAACGGCGACGGCAACGGTAACGGTGACGGTAACGGTGACGGTTCTGACAACGGTTCTGACAACG
GTGACGGTAACGGTGACGGTTCTGACAACGGTTCTGACAACGGTGACGGCTCCGACAACGGCAAC
GGCAACGGTGAAGGCTCCGACAACGGTGAGGGCTCTGGCAACGGC
Right flanking sequence: Indices 87927 -- 88426
TCCGACAACGGTGACGGGTCCAACAACGGCGCTGACAACGGCGACGGCTCTGACTCCGACTCTGG
TGCCAACTCTGGCTCCGGTGCTGGTGAGTCCGGTGAGGGCTCTGGTGCCGACTCTGGTGCTGACA
CCGGCTCCGACTCTACTGACAACTCCGGTGCCGACTCTGGTGCCGACGCTGTCCCCCCTATCGTT
TCCACTGGTGGCGCTGGTGCCACTAAGCCCTCGATGATGGTGGCTGCCGCCGTCGTTGCCCTTTT
GGCTCTCTAATACCCTTTCTAGCCCACGGGCTCTATATTTCGGTCTATTTATTTAAGGAATCCAT
TCAATCGTCCATTCAACCTGTGTAAGAAGATTTGTTTAAGGGAAAGTCTCAGAACCAGCAACCGA
GCCCTTTTTTCGTCAAAACACTCGCACACCATACCCTGTTTTCGTAACCCTTTTCTTGGCCATCT
TGGCGATCGATCGCACATTGCATAATGGACTAAAGCATGCCATTA
Found at i:88046 original size:12 final size:12
Alignment explanation
Indices: 88031--88103 Score: 58
Period size: 12 Copynumber: 6.1 Consensus size: 12
88021 CCGGTGAGGG
88031 CTCTGGTGCCGA
1 CTCTGGTGCCGA
*
88043 CTCTGGTGCTGA
1 CTCTGGTGCCGA
* *
88055 CACCGGCT-CCGA
1 CTCTGG-TGCCGA
** * *
88067 CTCTACTGACAA
1 CTCTGGTGCCGA
*
88079 CTCCGGTGCCGA
1 CTCTGGTGCCGA
88091 CTCTGGTGCCGA
1 CTCTGGTGCCGA
88103 C
1 C
88104 GCTGTCCCCC
Statistics
Matches: 43, Mismatches: 16, Indels: 4
0.68 0.25 0.06
Matches are distributed among these distances:
11 1 0.02
12 41 0.95
13 1 0.02
ACGTcount: A:0.14, C:0.37, G:0.27, T:0.22
Consensus pattern (12 bp):
CTCTGGTGCCGA
Left flanking sequence: Indices 87531 -- 88030
TCCGGTGTTGTGGGTGTCTCTACTGACTCTGAGGGTGACTGGACCACCGGTACCCTGACCTTCCC
TCACGCTACCACCGACGACTCTGAGACCCCCTCGTGGGTCACTGTGTACGTCACCCCTACTGCTG
GCACTGGTAACGGTGACGGTAACGGCGACGGCAACGGTAACGGTGACGGTAACGGTGACGGTTCT
GACAACGGTTCTGACAACGGTGACGGTAACGGTGACGGTTCTGACAACGGTTCTGACAACGGTGA
CGGCTCCGACAACGGCAACGGCAACGGTGAAGGCTCCGACAACGGTGAGGGCTCTGGCAACGGCG
CTGACAACGGTGATGGCTCCGACTCTGGTGCTGACAACGGTGACGGCTCCGACTCTGGTGCCGAC
AACGGTTCCGACAACGGTGACGGGTCCAACAACGGCGCTGACAACGGCGACGGCTCTGACTCCGA
CTCTGGTGCCAACTCTGGCTCCGGTGCTGGTGAGTCCGGTGAGGG
Right flanking sequence: Indices 88104 -- 88603
GCTGTCCCCCCTATCGTTTCCACTGGTGGCGCTGGTGCCACTAAGCCCTCGATGATGGTGGCTGC
CGCCGTCGTTGCCCTTTTGGCTCTCTAATACCCTTTCTAGCCCACGGGCTCTATATTTCGGTCTA
TTTATTTAAGGAATCCATTCAATCGTCCATTCAACCTGTGTAAGAAGATTTGTTTAAGGGAAAGT
CTCAGAACCAGCAACCGAGCCCTTTTTTCGTCAAAACACTCGCACACCATACCCTGTTTTCGTAA
CCCTTTTCTTGGCCATCTTGGCGATCGATCGCACATTGCATAATGGACTAAAGCATGCCATTAAG
GCTGCCCCTGAATACATCCAAAAGGCGTTGGAGCACGTATAAATCAATCCATCACGCACATTTTA
ACCAACCACACAACCAACCTCACAACCAACTTCACAACCAACCTCACAACCATCCTCACAACACT
CACTTCACAAAATTCTTTACGTTTATTAAATTCGGTCTGGAACTG
Found at i:88510 original size:12 final size:12
Alignment explanation
Indices: 88493--88555 Score: 99
Period size: 12 Copynumber: 5.2 Consensus size: 12
88483 CGCACATTTT
*
88493 AACCAACCACAC
1 AACCAACCTCAC
88505 AACCAACCTCAC
1 AACCAACCTCAC
*
88517 AACCAACTTCAC
1 AACCAACCTCAC
88529 AACCAACCTCAC
1 AACCAACCTCAC
*
88541 AACCATCCTCAC
1 AACCAACCTCAC
88553 AAC
1 AAC
88556 ACTCACTTCA
Statistics
Matches: 47, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
12 47 1.00
ACGTcount: A:0.43, C:0.48, G:0.00, T:0.10
Consensus pattern (12 bp):
AACCAACCTCAC
Left flanking sequence: Indices 87993 -- 88492
GCCAACTCTGGCTCCGGTGCTGGTGAGTCCGGTGAGGGCTCTGGTGCCGACTCTGGTGCTGACAC
CGGCTCCGACTCTACTGACAACTCCGGTGCCGACTCTGGTGCCGACGCTGTCCCCCCTATCGTTT
CCACTGGTGGCGCTGGTGCCACTAAGCCCTCGATGATGGTGGCTGCCGCCGTCGTTGCCCTTTTG
GCTCTCTAATACCCTTTCTAGCCCACGGGCTCTATATTTCGGTCTATTTATTTAAGGAATCCATT
CAATCGTCCATTCAACCTGTGTAAGAAGATTTGTTTAAGGGAAAGTCTCAGAACCAGCAACCGAG
CCCTTTTTTCGTCAAAACACTCGCACACCATACCCTGTTTTCGTAACCCTTTTCTTGGCCATCTT
GGCGATCGATCGCACATTGCATAATGGACTAAAGCATGCCATTAAGGCTGCCCCTGAATACATCC
AAAAGGCGTTGGAGCACGTATAAATCAATCCATCACGCACATTTT
Right flanking sequence: Indices 88556 -- 89055
ACTCACTTCACAAAATTCTTTACGTTTATTAAATTCGGTCTGGAACTGAAACCAATATGAATACA
GGAGGTTTGGATAGACATCCAAACCGGGCTGGCAATGCCAAAAGATAATTTAGGACAACGATAGT
GTCTATCACGTCTCCAGCGCGTCGGCAAACGGCGACTTGCGGTCGTCGTCACTCACAACAAACGT
GGGCCGGCTGGTGGGCTGCAAGGGCTCTGCCAGCTCCATGGTGGTGTCGGGCTCCGCCCGGGCCG
GCTGCACTGGCGCAGGGGTGGGCTCAACGAGAGGAGGGCCAAATGGGGACGGCAGTCGCTCCTCC
TCCTCGGCAATCGGGTTCGGATCGGTGAAACTCGAGCCGGTATGCACGGTGCCGTTGGCACTCCC
GTTTGGAGCCATCGGGGTGGCGCCACCATTCCCGTTCACGTTCCCGTTGGGGGTGAGCGCGTGAC
CACCCCGTTTGGGCGAAAACTGCGACAACGACGACCGCGGCGACT
Found at i:104740 original size:10 final size:10
Alignment explanation
Indices: 104708--104767 Score: 63
Period size: 10 Copynumber: 6.2 Consensus size: 10
104698 ACCCGTACAC
104708 CCAAACAACA
1 CCAAACAACA
* *
104718 CTAAACCAC-
1 CCAAACAACA
*
104727 CCAACCAACA
1 CCAAACAACA
104737 CCAAAC-ACA
1 CCAAACAACA
104746 CCCAAACAACA
1 -CCAAACAACA
104757 CCAAAC-ACA
1 CCAAACAACA
104766 CC
1 CC
104768 CCACATACCC
Statistics
Matches: 41, Mismatches: 6, Indels: 7
0.76 0.11 0.13
Matches are distributed among these distances:
9 14 0.34
10 24 0.59
11 3 0.07
ACGTcount: A:0.52, C:0.47, G:0.00, T:0.02
Consensus pattern (10 bp):
CCAAACAACA
Left flanking sequence: Indices 104208 -- 104707
CCGCAACCCCTTGCACGTGGACCCCAACAACGCCAAGAACGCCAAGTTCGACAAGCCTATTTTGC
ACGGTTTGTGCACCTTGGGCCACTCTGTCAAGTTGTTGTTGGACAAGTACGGTGGCTTTGACGAG
GTCAAGGCCCGTTTCACCGGTGTGGTGTACCCCGGCGAGACCTTGCGTGTCACTGCCTGGAAGCA
GGGCGACAAGGTGTTGTTCGAGACCCACGTTGTCGAGAGAGGCACTCTTGTCATTTCTAACGCCG
CCATCAAGTTGGTTGGCGACAAGGCCAACTTGTAACGTATTTATTCAATAAGATATAGGAATTTG
CAGCCATGCGCGTAATGTACCGGATCGGGAAGTAGAAGGCAGCTCAAGTGGGTTCTAATGTAGAT
GATGTCACAGTTGTCACAGTGATTTCGTGTAGAGTCGAAGCAGATGAAGCCTATCTTTCGCGCTG
ACACTAGACTTCACGGCCCCTAAGGAACTTCAAACACCCGTACAC
Right flanking sequence: Indices 104768 -- 105267
CCACATACCCAACGCACTCCACACACCCAACACACCCCACATACCCACACAACACCAACCCACTA
CACCATCTCCTTCTACCTATCTTATGTATTGCCTTTCAGCTATGCTATTTTAGCCCCGTTCCCGC
GGCAACCGGTCGTTCATCGAGAGCGACTGGCGCAACGAAAACGCCACTTTGCTCGGGGGAGGCTG
GGCGCGTGTCGGTGGCGCCGTGGGCACCACGCTATACTTGCGCTCCTTGAACTGGACCCCGACCT
CGGCCACGTTCTTTTTGTGCTCGGGGGTCACCGGGACAAACCAGTCGATCCCCTCGTCGTACTCG
TACATCCGGTAGTCAGTACCGTACGGCTTCAGCTCCAAGCAGTACAACGTGTGGAGCGGCACGTC
CAACTGGCCGATCAGCGCCTTCTCGAGGTTCAAGAAGTACGCCAAGAGAATCCGCAACACCACGC
GGTGGGCAATGATCAACAAGTGGTCGGTGGTGCGCTCGATCTCGG
Found at i:104749 original size:20 final size:20
Alignment explanation
Indices: 104704--104768 Score: 105
Period size: 20 Copynumber: 3.3 Consensus size: 20
104694 AAACACCCGT
*
104704 ACACCCAAACAACACTAAAC
1 ACACCCAAACAACACCAAAC
*
104724 -CACCCAACCAACACCAAAC
1 ACACCCAAACAACACCAAAC
104743 ACACCCAAACAACACCAAAC
1 ACACCCAAACAACACCAAAC
104763 ACACCC
1 ACACCC
104769 CACATACCCA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
19 17 0.41
20 24 0.59
ACGTcount: A:0.51, C:0.48, G:0.00, T:0.02
Consensus pattern (20 bp):
ACACCCAAACAACACCAAAC
Left flanking sequence: Indices 104204 -- 104703
GTGACCGCAACCCCTTGCACGTGGACCCCAACAACGCCAAGAACGCCAAGTTCGACAAGCCTATT
TTGCACGGTTTGTGCACCTTGGGCCACTCTGTCAAGTTGTTGTTGGACAAGTACGGTGGCTTTGA
CGAGGTCAAGGCCCGTTTCACCGGTGTGGTGTACCCCGGCGAGACCTTGCGTGTCACTGCCTGGA
AGCAGGGCGACAAGGTGTTGTTCGAGACCCACGTTGTCGAGAGAGGCACTCTTGTCATTTCTAAC
GCCGCCATCAAGTTGGTTGGCGACAAGGCCAACTTGTAACGTATTTATTCAATAAGATATAGGAA
TTTGCAGCCATGCGCGTAATGTACCGGATCGGGAAGTAGAAGGCAGCTCAAGTGGGTTCTAATGT
AGATGATGTCACAGTTGTCACAGTGATTTCGTGTAGAGTCGAAGCAGATGAAGCCTATCTTTCGC
GCTGACACTAGACTTCACGGCCCCTAAGGAACTTCAAACACCCGT
Right flanking sequence: Indices 104769 -- 105268
CACATACCCAACGCACTCCACACACCCAACACACCCCACATACCCACACAACACCAACCCACTAC
ACCATCTCCTTCTACCTATCTTATGTATTGCCTTTCAGCTATGCTATTTTAGCCCCGTTCCCGCG
GCAACCGGTCGTTCATCGAGAGCGACTGGCGCAACGAAAACGCCACTTTGCTCGGGGGAGGCTGG
GCGCGTGTCGGTGGCGCCGTGGGCACCACGCTATACTTGCGCTCCTTGAACTGGACCCCGACCTC
GGCCACGTTCTTTTTGTGCTCGGGGGTCACCGGGACAAACCAGTCGATCCCCTCGTCGTACTCGT
ACATCCGGTAGTCAGTACCGTACGGCTTCAGCTCCAAGCAGTACAACGTGTGGAGCGGCACGTCC
AACTGGCCGATCAGCGCCTTCTCGAGGTTCAAGAAGTACGCCAAGAGAATCCGCAACACCACGCG
GTGGGCAATGATCAACAAGTGGTCGGTGGTGCGCTCGATCTCGGT
Found at i:104777 original size:9 final size:9
Alignment explanation
Indices: 104761--104818 Score: 55
Period size: 9 Copynumber: 6.6 Consensus size: 9
104751 ACAACACCAA
104761 ACACACCCC
1 ACACACCCC
* *
104770 ACATACCCA
1 ACACACCCC
* *
104779 ACGCACTCC
1 ACACACCCC
*
104788 ACACACCCA
1 ACACACCCC
104797 ACACACCCC
1 ACACACCCC
*
104806 ACATA-CCC
1 ACACACCCC
104814 ACACA
1 ACACA
104819 ACACCAACCC
Statistics
Matches: 37, Mismatches: 12, Indels: 1
0.74 0.24 0.02
Matches are distributed among these distances:
8 7 0.19
9 30 0.81
ACGTcount: A:0.38, C:0.55, G:0.02, T:0.05
Consensus pattern (9 bp):
ACACACCCC
Left flanking sequence: Indices 104261 -- 104760
AGCCTATTTTGCACGGTTTGTGCACCTTGGGCCACTCTGTCAAGTTGTTGTTGGACAAGTACGGT
GGCTTTGACGAGGTCAAGGCCCGTTTCACCGGTGTGGTGTACCCCGGCGAGACCTTGCGTGTCAC
TGCCTGGAAGCAGGGCGACAAGGTGTTGTTCGAGACCCACGTTGTCGAGAGAGGCACTCTTGTCA
TTTCTAACGCCGCCATCAAGTTGGTTGGCGACAAGGCCAACTTGTAACGTATTTATTCAATAAGA
TATAGGAATTTGCAGCCATGCGCGTAATGTACCGGATCGGGAAGTAGAAGGCAGCTCAAGTGGGT
TCTAATGTAGATGATGTCACAGTTGTCACAGTGATTTCGTGTAGAGTCGAAGCAGATGAAGCCTA
TCTTTCGCGCTGACACTAGACTTCACGGCCCCTAAGGAACTTCAAACACCCGTACACCCAAACAA
CACTAAACCACCCAACCAACACCAAACACACCCAAACAACACCAA
Right flanking sequence: Indices 104819 -- 105318
ACACCAACCCACTACACCATCTCCTTCTACCTATCTTATGTATTGCCTTTCAGCTATGCTATTTT
AGCCCCGTTCCCGCGGCAACCGGTCGTTCATCGAGAGCGACTGGCGCAACGAAAACGCCACTTTG
CTCGGGGGAGGCTGGGCGCGTGTCGGTGGCGCCGTGGGCACCACGCTATACTTGCGCTCCTTGAA
CTGGACCCCGACCTCGGCCACGTTCTTTTTGTGCTCGGGGGTCACCGGGACAAACCAGTCGATCC
CCTCGTCGTACTCGTACATCCGGTAGTCAGTACCGTACGGCTTCAGCTCCAAGCAGTACAACGTG
TGGAGCGGCACGTCCAACTGGCCGATCAGCGCCTTCTCGAGGTTCAAGAAGTACGCCAAGAGAAT
CCGCAACACCACGCGGTGGGCAATGATCAACAAGTGGTCGGTGGTGCGCTCGATCTCGGTGATGA
GCGGGCGCAACCGCGTCAACACGTCCAAGTACAGCTCGCCACCCA
Found at i:104795 original size:18 final size:18
Alignment explanation
Indices: 104734--104818 Score: 82
Period size: 18 Copynumber: 4.7 Consensus size: 18
104724 CACCCAACCA
* *
104734 ACACCAAACACACCCAAAC
1 ACACCCAACACACCC-CAC
*
104753 AACACCAAACACACCCCAC
1 -ACACCCAACACACCCCAC
* * *
104772 ATACCCAACGCACTCCAC
1 ACACCCAACACACCCCAC
104790 ACACCCAACACACCCCAC
1 ACACCCAACACACCCCAC
*
104808 ATACCC-ACACA
1 ACACCCAACACA
104819 ACACCAACCC
Statistics
Matches: 56, Mismatches: 9, Indels: 3
0.82 0.13 0.04
Matches are distributed among these distances:
17 5 0.09
18 34 0.61
19 2 0.04
20 15 0.27
ACGTcount: A:0.44, C:0.52, G:0.01, T:0.04
Consensus pattern (18 bp):
ACACCCAACACACCCCAC
Left flanking sequence: Indices 104234 -- 104733
ACAACGCCAAGAACGCCAAGTTCGACAAGCCTATTTTGCACGGTTTGTGCACCTTGGGCCACTCT
GTCAAGTTGTTGTTGGACAAGTACGGTGGCTTTGACGAGGTCAAGGCCCGTTTCACCGGTGTGGT
GTACCCCGGCGAGACCTTGCGTGTCACTGCCTGGAAGCAGGGCGACAAGGTGTTGTTCGAGACCC
ACGTTGTCGAGAGAGGCACTCTTGTCATTTCTAACGCCGCCATCAAGTTGGTTGGCGACAAGGCC
AACTTGTAACGTATTTATTCAATAAGATATAGGAATTTGCAGCCATGCGCGTAATGTACCGGATC
GGGAAGTAGAAGGCAGCTCAAGTGGGTTCTAATGTAGATGATGTCACAGTTGTCACAGTGATTTC
GTGTAGAGTCGAAGCAGATGAAGCCTATCTTTCGCGCTGACACTAGACTTCACGGCCCCTAAGGA
ACTTCAAACACCCGTACACCCAAACAACACTAAACCACCCAACCA
Right flanking sequence: Indices 104819 -- 105318
ACACCAACCCACTACACCATCTCCTTCTACCTATCTTATGTATTGCCTTTCAGCTATGCTATTTT
AGCCCCGTTCCCGCGGCAACCGGTCGTTCATCGAGAGCGACTGGCGCAACGAAAACGCCACTTTG
CTCGGGGGAGGCTGGGCGCGTGTCGGTGGCGCCGTGGGCACCACGCTATACTTGCGCTCCTTGAA
CTGGACCCCGACCTCGGCCACGTTCTTTTTGTGCTCGGGGGTCACCGGGACAAACCAGTCGATCC
CCTCGTCGTACTCGTACATCCGGTAGTCAGTACCGTACGGCTTCAGCTCCAAGCAGTACAACGTG
TGGAGCGGCACGTCCAACTGGCCGATCAGCGCCTTCTCGAGGTTCAAGAAGTACGCCAAGAGAAT
CCGCAACACCACGCGGTGGGCAATGATCAACAAGTGGTCGGTGGTGCGCTCGATCTCGGTGATGA
GCGGGCGCAACCGCGTCAACACGTCCAAGTACAGCTCGCCACCCA
Found at i:107756 original size:9 final size:9
Alignment explanation
Indices: 107742--107771 Score: 60
Period size: 9 Copynumber: 3.3 Consensus size: 9
107732 GCTTTGCCCG
107742 TGGGTGGAC
1 TGGGTGGAC
107751 TGGGTGGAC
1 TGGGTGGAC
107760 TGGGTGGAC
1 TGGGTGGAC
107769 TGG
1 TGG
107772 CCAGTTTGGC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.10, C:0.10, G:0.57, T:0.23
Consensus pattern (9 bp):
TGGGTGGAC
Left flanking sequence: Indices 107242 -- 107741
GCACCGACGACAGCAGGCGCAACTCGCCCAAGTTCAAGTGCGAGATGGTTTTGCCGAGCGGCGCC
TCCTCCTCGATGTCGTCGATGTCCAGGGTGACCCGGGTCACCGGCAGCGCCAACAGCAGCACGAT
GGGGGTGTCGGTCAACGGGCGCTTGTTGAACTCGGGAAGCAGCAGCGTCAGCCCGTGCGCCAGCG
AGAGCGTCAGGTCCAACAGCTTCAGCATCCCGATGTCGGGCGCGTACGGGCGGCGGCGCCACCCG
GCCGCCATCTGTGCAGGGGTGGGCAGCGGCAGGTTCAGGATCAGGAGGGCCCGGAGCCGAGGCAC
CGGGTGCGAGAGCGCGGGGTGGAGCCGCCGTGGCTCCTCGGACTCCAGCTCGGAGTCCAGCTCGC
CCGACGAGATCAGCGCCAGCGAGCACGCCAGGTGGAGGTTGGAGAACGACACCTTCTTGCGGGCG
GCGCCCAAGTGCGAGCCCGGGTGGCCGTGGGCGTGGCTTTGCCCG
Right flanking sequence: Indices 107772 -- 108271
CCAGTTTGGCCGTGGGATTGGCTGTGGTCCGACACGCCCAGATGGACACGCGAGAGACTGGACGG
GGTGTGCACGGACTGGCCCTGGTGCGCTGCGTGGAGCTGCGAGAGCCCCGACGGGCCCTGGTGGC
CGCCGTGGCTGATGCCCTCCTTGGCAAACGGCTGGTTGGCAAAATGCTGGTTCTGGGCGAGGCTC
AGGCCAAACAGCGGGATGTGCGGGGGGTGGGGGCTTTGCAGGCCCTGGTGGCTGAGCGGGCTGGG
CGACAGCTGGGCCAATGGCGCTCCTGCGGTGAAACCGTGGATGCCTCCCGGCTGGTACAAATGGG
GTGGCGAGCTCGTTTTGGTGAGCGGAACCCGGGTCTCGGGGGTCAGCGACTTGGCCACACGCATC
ACCTGCTCGGGCAGCTTGCTGTTGTAGTAGCGGTACCGCTCCTGGAGAGCCTCCGAGAGGTTCAG
TCGCAACGGACGGCGGGCATCTCTCGGGGGAGGGTCTTCCGAGCG
Found at i:108958 original size:13 final size:13
Alignment explanation
Indices: 108940--108987 Score: 87
Period size: 13 Copynumber: 3.7 Consensus size: 13
108930 TGATCACTGG
108940 TGTCATCGGTGGA
1 TGTCATCGGTGGA
108953 TGTCATCGGTGGA
1 TGTCATCGGTGGA
108966 TGTCATCGGTGGA
1 TGTCATCGGTGGA
*
108979 TGTTATCGG
1 TGTCATCGG
108988 GTGGGGTGGT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
13 34 1.00
ACGTcount: A:0.15, C:0.15, G:0.38, T:0.33
Consensus pattern (13 bp):
TGTCATCGGTGGA
Left flanking sequence: Indices 108440 -- 108939
GAGGGGAAGCGAGTGGGGCAACGGTTGGAAGGTGGAAGGAAGGACGACCCGGGAGCGACGAGGGA
GAGGGTGTGTGGGGGCTACGAGGGTGGGCTGTAGGCTACGGTGGTTTCGTTTTTTGGTGGGGTTC
GCATTGATTTTGGGTTTCGTAGGTATCGTGTAGCATTGTCAGGACGTTCCATCGATGACTGGGCA
CGTGGAGCCAAGGATTACGGAGCGACCCCGGGGTGTCGTCGCATGCGCCTGCGGTGTAGCCACAA
GAGGTGGGGTGGGTTCGCTTACGTTTTGTGGCTGGTGGGACCACTGGCGCAATCGTTGCTTTTGT
CCCTCGGTGATACGAGAGGTGGATCTCACGGTTGCTGGGGTCGGTGTGGAGGTGGGCACCGGTAG
GGCTACGGTGTGGCCTCAAGAGGTGGTGAGGCTCGGGGGCGCAGCTGTCACCCTGGGAACGCCGG
CTCCTGCGGGGCTAATGGTCATCGCAGAAATCAGGTGATCACTGG
Right flanking sequence: Indices 108988 -- 109487
GTGGGGTGGTGAAGTGACGGTGGATTGGGTAGTGTTTACGGTGACAGCGTGGACCCTGTGGGGGA
CACAGGGTTCAGTTGCTGGTGCCTGGTTACGCTCAGACCGTGTCTGAAATAGTCTGAAATTGCTG
GATGTGTCAAACCGGTGTCTGAAAAGTAATTTTCAAAGTCGACGCCAGGTCCATTGTGACGGGTT
ATTGTAACCAATCGTCGCGTGCGAAGGGTTTCGTTTCACCGTCTACAGATCGAACAATAAGCCCG
GGCTCATCGTAGCCACCACGTAGTGAGTCACCCCAAGTGCAGCACGGTTACGAGTGCGAGTGCCC
GTTTAGGAAACAGACAGGCGAGCATGCCACCCAAAGTATGGCTCAACTGCTCACGGCCGGGTTTC
CCAAAGGGGAACGCGGAAAAACTACCAAGGTGACGCGGCCGGACTTATGTAGACGAGTGCATCGC
AGGAGAATGCGGCGGGGCTGAGGCAGTTTCGGCGGCAGATTCACT
Found at i:142835 original size:24 final size:24
Alignment explanation
Indices: 142808--142853 Score: 67
Period size: 24 Copynumber: 1.9 Consensus size: 24
142798 CCCACGGAGC
*
142808 CCGCAGCGGC-CTCGGCAGCCGCCA
1 CCGCAGCAGCACT-GGCAGCCGCCA
142832 CCGCAGCAGCACTGGCAGCCGC
1 CCGCAGCAGCACTGGCAGCCGC
142854 ACTGGCAGCC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
24 18 0.90
25 2 0.10
ACGTcount: A:0.15, C:0.48, G:0.33, T:0.04
Consensus pattern (24 bp):
CCGCAGCAGCACTGGCAGCCGCCA
Left flanking sequence: Indices 142308 -- 142807
GTTGAGCGACGAGTCGGTGGCCACCTACGTCGAGCTGCGGCTCAACCAGGTGATGCCCCAGTTCA
TCCACCGGTTGTGCTCGGCCATCGCCCTCACCGAGCGTCGGGCTCTTCAGCAGAAGGAGCCTCCC
GAGACGATTCGCCAGGTGGTATCGGACGTGCGTCGCATCTTGGCCAAGCTCCGAGCCGAGGTGGC
CGAGCTGGACGACGAGCGCGAGCGCTGCTTTACCTACACCCCGATGCTCCGCGGAGGACCCGCTC
CTGGGCCCCAGCCAGCACGCACGCTGGCTCTCCGCGACACGGCCGAGCGCGCCAACCGCCAGCGA
CCTACAATTCTCACCCAGGAGGTGAGTCAAGACATCATGTCTGGTGCCACCGTCACCGGGTTCGA
CGGGTTCGCCGTGGGCACCGCGTCGCCGTTTGACCGGATCATCCGACGGGAAAACGCCACCACCG
CCACCTCCAACACTACCGCCACCGCACCAGCTCCGCCCACGGAGC
Right flanking sequence: Indices 142854 -- 143353
ACTGGCAGCCACCCAGGTGCTGGGGCTGGGCTTTGGCCACAACAACCGGCTGAGCCCCCGTGCCA
ACGTCCTGACCGCGAGCCCGCCCACTGTAGGATACAGTGCCACCACCACCGGGGCCACCACGGGT
CCTGAGGCCACAGGGACGCGTGATGACGATGTTCCCACTCCTACTCTTCGGGCTCGTCCCACACG
GCTGATTCGCCAGTTTTTCAACGACTTTGGCGAGATGGTGGAGGAGCGTCGCTCAGTGGCCACCG
ACGACGAGGGCCGTGGTCGTCCCGAGAACGTGATTTCCGACGTCATTCGCGGGGTATTCTCCCAG
TTGGGTCCGCCGAGCTCGATCCTGATTCTGGGCAACCCACGCGAGGCCCGCGCCCGGCTGGAGCC
CCACACCGAGCGCCCGTCGCAGCTGACACACACTCCCGTGCACCTGACCAACACTCTGGGCTCGG
CCACCATGGCGAGCACCCCAGGCCGCGGCTCGACGACGGCCCCGG
Found at i:142863 original size:12 final size:12
Alignment explanation
Indices: 142821--142863 Score: 52
Period size: 12 Copynumber: 3.6 Consensus size: 12
142811 CAGCGGCCTC
142821 GGCAGCCGCCAC-
1 GGCAGCCG-CACT
* *
142833 CGCAGCAGCACT
1 GGCAGCCGCACT
142845 GGCAGCCGCACT
1 GGCAGCCGCACT
142857 GGCAGCC
1 GGCAGCC
142864 ACCCAGGTGC
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
11 3 0.12
12 23 0.88
ACGTcount: A:0.19, C:0.44, G:0.33, T:0.05
Consensus pattern (12 bp):
GGCAGCCGCACT
Left flanking sequence: Indices 142321 -- 142820
TCGGTGGCCACCTACGTCGAGCTGCGGCTCAACCAGGTGATGCCCCAGTTCATCCACCGGTTGTG
CTCGGCCATCGCCCTCACCGAGCGTCGGGCTCTTCAGCAGAAGGAGCCTCCCGAGACGATTCGCC
AGGTGGTATCGGACGTGCGTCGCATCTTGGCCAAGCTCCGAGCCGAGGTGGCCGAGCTGGACGAC
GAGCGCGAGCGCTGCTTTACCTACACCCCGATGCTCCGCGGAGGACCCGCTCCTGGGCCCCAGCC
AGCACGCACGCTGGCTCTCCGCGACACGGCCGAGCGCGCCAACCGCCAGCGACCTACAATTCTCA
CCCAGGAGGTGAGTCAAGACATCATGTCTGGTGCCACCGTCACCGGGTTCGACGGGTTCGCCGTG
GGCACCGCGTCGCCGTTTGACCGGATCATCCGACGGGAAAACGCCACCACCGCCACCTCCAACAC
TACCGCCACCGCACCAGCTCCGCCCACGGAGCCCGCAGCGGCCTC
Right flanking sequence: Indices 142864 -- 143363
ACCCAGGTGCTGGGGCTGGGCTTTGGCCACAACAACCGGCTGAGCCCCCGTGCCAACGTCCTGAC
CGCGAGCCCGCCCACTGTAGGATACAGTGCCACCACCACCGGGGCCACCACGGGTCCTGAGGCCA
CAGGGACGCGTGATGACGATGTTCCCACTCCTACTCTTCGGGCTCGTCCCACACGGCTGATTCGC
CAGTTTTTCAACGACTTTGGCGAGATGGTGGAGGAGCGTCGCTCAGTGGCCACCGACGACGAGGG
CCGTGGTCGTCCCGAGAACGTGATTTCCGACGTCATTCGCGGGGTATTCTCCCAGTTGGGTCCGC
CGAGCTCGATCCTGATTCTGGGCAACCCACGCGAGGCCCGCGCCCGGCTGGAGCCCCACACCGAG
CGCCCGTCGCAGCTGACACACACTCCCGTGCACCTGACCAACACTCTGGGCTCGGCCACCATGGC
GAGCACCCCAGGCCGCGGCTCGACGACGGCCCCGGCGTCCACCCA
Found at i:143291 original size:21 final size:22
Alignment explanation
Indices: 143256--143299 Score: 56
Period size: 21 Copynumber: 2.0 Consensus size: 22
143246 ACACCGAGCG
*
143256 CCCGTCGCAGCTGA-CACACACT
1 CCCGTCGCACCTGACCA-ACACT
143278 CCCGT-GCACCTGACCAACACT
1 CCCGTCGCACCTGACCAACACT
143299 C
1 C
143300 TGGGCTCGGC
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
21 13 0.65
22 7 0.35
ACGTcount: A:0.23, C:0.48, G:0.16, T:0.14
Consensus pattern (22 bp):
CCCGTCGCACCTGACCAACACT
Left flanking sequence: Indices 142756 -- 143255
ACCACCGCCACCTCCAACACTACCGCCACCGCACCAGCTCCGCCCACGGAGCCCGCAGCGGCCTC
GGCAGCCGCCACCGCAGCAGCACTGGCAGCCGCACTGGCAGCCACCCAGGTGCTGGGGCTGGGCT
TTGGCCACAACAACCGGCTGAGCCCCCGTGCCAACGTCCTGACCGCGAGCCCGCCCACTGTAGGA
TACAGTGCCACCACCACCGGGGCCACCACGGGTCCTGAGGCCACAGGGACGCGTGATGACGATGT
TCCCACTCCTACTCTTCGGGCTCGTCCCACACGGCTGATTCGCCAGTTTTTCAACGACTTTGGCG
AGATGGTGGAGGAGCGTCGCTCAGTGGCCACCGACGACGAGGGCCGTGGTCGTCCCGAGAACGTG
ATTTCCGACGTCATTCGCGGGGTATTCTCCCAGTTGGGTCCGCCGAGCTCGATCCTGATTCTGGG
CAACCCACGCGAGGCCCGCGCCCGGCTGGAGCCCCACACCGAGCG
Right flanking sequence: Indices 143300 -- 143799
TGGGCTCGGCCACCATGGCGAGCACCCCAGGCCGCGGCTCGACGACGGCCCCGGCGTCCACCCAG
TCGCCCGCAGGAGGCATGTGGCGCCACGAGGAGGAAGAAGAACAGCCCGACGCCGACGTCGACAT
GCCCGGTCCCGATGACTTGGACTAGGCTCTGCATAGGTATATAGACATAAGATTGCATTTGTGAT
AAGAGGCAGTAGTGAAAGATGGCGGTGGTATGTGAGGGCATTTATAGCTATGATCGCTTACAGCT
AGATCTCAACAGCCATTTGCAACCACTGCCGTGTGCATTTTGCAACCAGTTGCATGCAGTACATT
CAATAACTGCAACGCAGCATGGACGGTTAAGCCGTGTACTGCTACTTTCCTACCAAACTATCCCC
GACTCTTTTAACCATATTATTGTCTATAATGCTACCGGGTCACCATGAAAATCTCGTCCAACGCT
TTCGCGTCCATCACCGACGCCCGTTTCGCGGCGATCCACTTGGAG
Found at i:143946 original size:18 final size:18
Alignment explanation
Indices: 143910--144025 Score: 128
Period size: 18 Copynumber: 6.3 Consensus size: 18
143900 CGAGTTTGGC
*
143910 CTCCTTCTTGGCCTTCTT
1 CTCCTTCTTGTCCTTCTT
143928 CTCCTCTTTCTTGTCCTTCTT
1 CT-C-C-TTCTTGTCCTTCTT
*
143949 GT-CTTCCTTG-CTCTTCTT
1 CTCCTT-CTTGTC-CTTCTT
*
143967 CTCCTTCTTTTCCTTCTT
1 CTCCTTCTTGTCCTTCTT
* *
143985 TTCCTTCTTCTCCTTCTT
1 CTCCTTCTTGTCCTTCTT
144003 CTCCTTCTTGTCCTTCTT
1 CTCCTTCTTGTCCTTCTT
144021 CTCCT
1 CTCCT
144026 CCTTTCTCGC
Statistics
Matches: 83, Mismatches: 8, Indels: 14
0.79 0.08 0.13
Matches are distributed among these distances:
17 3 0.04
18 60 0.72
19 5 0.06
20 1 0.01
21 14 0.17
ACGTcount: A:0.00, C:0.39, G:0.05, T:0.56
Consensus pattern (18 bp):
CTCCTTCTTGTCCTTCTT
Left flanking sequence: Indices 143410 -- 143909
CCCGACGCCGACGTCGACATGCCCGGTCCCGATGACTTGGACTAGGCTCTGCATAGGTATATAGA
CATAAGATTGCATTTGTGATAAGAGGCAGTAGTGAAAGATGGCGGTGGTATGTGAGGGCATTTAT
AGCTATGATCGCTTACAGCTAGATCTCAACAGCCATTTGCAACCACTGCCGTGTGCATTTTGCAA
CCAGTTGCATGCAGTACATTCAATAACTGCAACGCAGCATGGACGGTTAAGCCGTGTACTGCTAC
TTTCCTACCAAACTATCCCCGACTCTTTTAACCATATTATTGTCTATAATGCTACCGGGTCACCA
TGAAAATCTCGTCCAACGCTTTCGCGTCCATCACCGACGCCCGTTTCGCGGCGATCCACTTGGAG
CGTGCACCCAACCGGGCCAGAACGGGCGTCAGTTCACGCGACGCCGGGGTCAGTTCGCGCGAGGC
AGTAGCCAGTTTGTCCTTCTTGGCGAGCTTCTTTGCGAGTTTGGC
Right flanking sequence: Indices 144026 -- 144525
CCTTTCTCGCTCGCTTGGACTCCTTCTTCAGCTCGTCGTCGCGTTTACGCTTCTTTTCCGGTGCT
GGCGAGGCGGTAGCAGACGGTGTGGCGGGCTCAAGCACAGCCACCTCCTCTGTCGGCTTCAACTG
GCGGTCCAGACTGTTCCAGGTGCTCTGTAGCGTGGGGCCCTTGACGAAGTGCATACCCCACTTGC
CGTTAATGATACGCTCCTTGCGCTGGCGCTCCAACTCGTTGGACACTTGCTCCTCCTTGCCGTTG
AGCCGGCCCAAAATCTGCTGGAAAACGTCGAGCCCGGCACTGTCGTCGTCCATGCCGTCACCGCC
GTTCTTCTTTTTGCGCAACTTGGCACCCAAACCCAAGTTATCGTCCTTGATCAGCACCTTGACGT
GGGTGGTGACGGCGCCCAGCACCAACCCGAGCCCCTGGCCCTGTTTCCACCCCATCTTTTCCATG
TATTGCACGCCAAACCGCAGGGCATCGTTCAGCCACGACGTGTTT
Found at i:143947 original size:9 final size:9
Alignment explanation
Indices: 143910--144025 Score: 110
Period size: 9 Copynumber: 12.6 Consensus size: 9
143900 CGAGTTTGGC
143910 CTCCTTCTT
1 CTCCTTCTT
**
143919 GGCCTTCTT
1 CTCCTTCTT
143928 CTCCTCTTTCTT
1 CT-C-C-TTCTT
*
143940 GTCCTTCTT
1 CTCCTTCTT
*
143949 GT-CTTCCTT
1 CTCCTT-CTT
143958 GCT-CTTCTT
1 -CTCCTTCTT
143967 CTCCTTCTT
1 CTCCTTCTT
*
143976 TTCCTTCTT
1 CTCCTTCTT
*
143985 TTCCTTCTT
1 CTCCTTCTT
143994 CTCCTTCTT
1 CTCCTTCTT
144003 CTCCTTCTT
1 CTCCTTCTT
*
144012 GTCCTTCTT
1 CTCCTTCTT
144021 CTCCT
1 CTCCT
144026 CCTTTCTCGC
Statistics
Matches: 91, Mismatches: 10, Indels: 12
0.81 0.09 0.11
Matches are distributed among these distances:
8 5 0.05
9 72 0.79
10 6 0.07
11 2 0.02
12 6 0.07
ACGTcount: A:0.00, C:0.39, G:0.05, T:0.56
Consensus pattern (9 bp):
CTCCTTCTT
Left flanking sequence: Indices 143410 -- 143909
CCCGACGCCGACGTCGACATGCCCGGTCCCGATGACTTGGACTAGGCTCTGCATAGGTATATAGA
CATAAGATTGCATTTGTGATAAGAGGCAGTAGTGAAAGATGGCGGTGGTATGTGAGGGCATTTAT
AGCTATGATCGCTTACAGCTAGATCTCAACAGCCATTTGCAACCACTGCCGTGTGCATTTTGCAA
CCAGTTGCATGCAGTACATTCAATAACTGCAACGCAGCATGGACGGTTAAGCCGTGTACTGCTAC
TTTCCTACCAAACTATCCCCGACTCTTTTAACCATATTATTGTCTATAATGCTACCGGGTCACCA
TGAAAATCTCGTCCAACGCTTTCGCGTCCATCACCGACGCCCGTTTCGCGGCGATCCACTTGGAG
CGTGCACCCAACCGGGCCAGAACGGGCGTCAGTTCACGCGACGCCGGGGTCAGTTCGCGCGAGGC
AGTAGCCAGTTTGTCCTTCTTGGCGAGCTTCTTTGCGAGTTTGGC
Right flanking sequence: Indices 144026 -- 144525
CCTTTCTCGCTCGCTTGGACTCCTTCTTCAGCTCGTCGTCGCGTTTACGCTTCTTTTCCGGTGCT
GGCGAGGCGGTAGCAGACGGTGTGGCGGGCTCAAGCACAGCCACCTCCTCTGTCGGCTTCAACTG
GCGGTCCAGACTGTTCCAGGTGCTCTGTAGCGTGGGGCCCTTGACGAAGTGCATACCCCACTTGC
CGTTAATGATACGCTCCTTGCGCTGGCGCTCCAACTCGTTGGACACTTGCTCCTCCTTGCCGTTG
AGCCGGCCCAAAATCTGCTGGAAAACGTCGAGCCCGGCACTGTCGTCGTCCATGCCGTCACCGCC
GTTCTTCTTTTTGCGCAACTTGGCACCCAAACCCAAGTTATCGTCCTTGATCAGCACCTTGACGT
GGGTGGTGACGGCGCCCAGCACCAACCCGAGCCCCTGGCCCTGTTTCCACCCCATCTTTTCCATG
TATTGCACGCCAAACCGCAGGGCATCGTTCAGCCACGACGTGTTT
Found at i:148287 original size:21 final size:20
Alignment explanation
Indices: 148261--148299 Score: 69
Period size: 21 Copynumber: 1.9 Consensus size: 20
148251 CAGGTCGTCG
148261 TCGTCGCCAGCAGTAGCGGCC
1 TCGTCGCCAGCAGT-GCGGCC
148282 TCGTCGCCAGCAGTGCGG
1 TCGTCGCCAGCAGTGCGG
148300 GCGTTGTTCT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.13, C:0.36, G:0.36, T:0.15
Consensus pattern (20 bp):
TCGTCGCCAGCAGTGCGGCC
Left flanking sequence: Indices 147761 -- 148260
GGTGGGATGCCAACGCCTCCTCGACATCTACGTCGGAGTCGTCGCTTTCGTCGTCGCTCAGCTGG
ACCTTGCGTCTGCGACGACGGCCCTGCGGTTTCTCCTCTGGCTCTTCCGGCTCGGGAACCACCAC
CGGACGCACGAGCTCGTCGGTCACCTGGGCCAACTGCTGCGCGTATTTGTCGTAGTTACCCGCAA
GAGCCACTGTACGTGCAGCCATGCTCAGCGTGAGCACGTCCCGCACCGCCACCAACTCCTTTTTG
AGCGCTTGCTCGCGTTTCCCGGCCAGATTGAGCCATTGAAGGAGCGCGTTGATCTGCTCGGGCTC
GTCAAAGTACTCCCACTGGTCTCCGTCCACCAAATGGGTGTCGTGTTCGGTTTCCATGCGCTTCA
CCACCTCGGGGTCGTGCAAATGGAGCTCGACATCGCCCTTAGTGGGGCCCTGAACCCACAACTTG
CCCATGAGGTAGGTCTCCTCAAGCAACTCGTCGTCCAGGTCGTCG
Right flanking sequence: Indices 148300 -- 148799
GCGTTGTTCTCAAACCACCAGTACCGGTTGAAGAACCGGTCCTTCCCGAGGAGCTTGACCCGCTG
ACAGTCAAAGTCGGCGATTTTGCGCTCAAACTCGCGCTTGGCCACCCGGAGCCGCCGCATGTTCT
CAATGTGTTTGGTGCGCTCGGCGAGCAGCTTCGCGTAGTCGGGATCGGTCTCGGCAAGCGCATTC
TCCTCGTCGTTCTCTTCAAGCAGATGCAAGTCCACCTTGTCGCCTCGGCTGAGTTTTTCGTTGGT
GGCGGCAAATGCCTTCTGGGCCTGCTCAAACGCCGCCTTGTAATCGCGGATGTTGTCGAGACGCT
GTCTACGGTGGGAGGTGGCGGCCTCAAGGCAGTACTCGATGTGGGCTCGCACCACTTTGCCGGTG
CTGAGCAAGTCAATGATGATCATGAGGATGTGGACCCGGAGCGTGGGCAGCACCAGCTTGTACCA
GCGCTCCAAGATCTTCAGCGGGGTCGGAGTGGGGTCGTCAGCGGG
Found at i:149162 original size:24 final size:23
Alignment explanation
Indices: 149122--149186 Score: 69
Period size: 24 Copynumber: 2.7 Consensus size: 23
149112 CACCACGTGA
*
149122 CCGTTGGCGTCGCCGTTGAG-TGTC
1 CCGTTGGCGTC-TCGTTG-GCTGTC
149146 CCGTTGGCGGTCTCGTTGGCTGTC
1 CCGTTGGC-GTCTCGTTGGCTGTC
*
149170 TCGTTGGCTGTCTCGTT
1 CCGTTGGC-GTCTCGTT
149187 TGCAGTCTCG
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
23 1 0.03
24 32 0.89
25 3 0.08
ACGTcount: A:0.02, C:0.28, G:0.35, T:0.35
Consensus pattern (23 bp):
CCGTTGGCGTCTCGTTGGCTGTC
Left flanking sequence: Indices 148622 -- 149121
GCTGTCTACGGTGGGAGGTGGCGGCCTCAAGGCAGTACTCGATGTGGGCTCGCACCACTTTGCCG
GTGCTGAGCAAGTCAATGATGATCATGAGGATGTGGACCCGGAGCGTGGGCAGCACCAGCTTGTA
CCAGCGCTCCAAGATCTTCAGCGGGGTCGGAGTGGGGTCGTCAGCGGGAGTGAGCACGGAAAACG
CCTCCTCGGCCGTGGTCTTGCACTGAGGGATGTGCTCAACCAACAGCAACACCCCGAGCACGATG
CACTGCCAGTTGCCGTCCTTGAAGTTGCGCTTTTGCAAGCGCTCCCACCACGGGGTGTTGCGGTA
GTTGAGTACGTGCTGGAGCGGTGTCGGTTCCTCCTCGTCCTCGGAGGCCAGGGCGGGAGCTGGCA
GCTCGGTGCGGGCACGTTTCAGCGGTGGGCGGCCGCGGCCACGCCCGTTGCGGGTTCGTTTGCCC
GAGGGGGCCACTTCGTCCTCGGAGTCCGACACCTCCACCACGTGA
Right flanking sequence: Indices 149187 -- 149686
TGCAGTCTCGTCCGCGTCGTGATTGTCTTCCTTGTCCTCCTTGTCCTCCTTATCGTCCTTATCGT
CCTTTTCTTCGTCCTTTTCTTCTTTGTCTTCCTCCTCCTCGTCCTCACTCTCCTCCTCCGCGGGC
ACAGTCACAAGCAAGTCCATCTCCTTCTTGGGAGCGTTCAGAGCCACCGCGCCCAACACCGCACA
GAAGATCTCGTCCACAAGCACGCAGTTGCCGTGCTCGTCGTAGTCGTCCCAGTCCCACCGCATAG
CCACCACAAAGTCGTCAAACGTGAACGCATCGATTTTGAGCGCGACGTGGAAAATGTTGATGAAC
GACCAGCACCGGAGGGCGTCAGCAATCACGTCGGCAAACACCTTTTCGCGCTTGCCCTCGGGACG
GACGTCACCTGCGGGTGCTGTGAGAGTCAAGTCCTCCACCACCTGCTTGGCGCTGCCCACATGGT
CCAAGTTCTTGGGCTTTCTGTCCTTGTCGCGACGTCTGCCGTCGG
Found at i:149178 original size:12 final size:12
Alignment explanation
Indices: 149142--149197 Score: 76
Period size: 12 Copynumber: 4.7 Consensus size: 12
149132 CGCCGTTGAG
*
149142 TGTCCCGTTGGC
1 TGTCTCGTTGGC
*
149154 GGTCTCGTTGGC
1 TGTCTCGTTGGC
149166 TGTCTCGTTGGC
1 TGTCTCGTTGGC
*
149178 TGTCTCGTTTGC
1 TGTCTCGTTGGC
*
149190 AGTCTCGT
1 TGTCTCGT
149198 CCGCGTCGTG
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 39 1.00
ACGTcount: A:0.02, C:0.27, G:0.32, T:0.39
Consensus pattern (12 bp):
TGTCTCGTTGGC
Left flanking sequence: Indices 148642 -- 149141
GCGGCCTCAAGGCAGTACTCGATGTGGGCTCGCACCACTTTGCCGGTGCTGAGCAAGTCAATGAT
GATCATGAGGATGTGGACCCGGAGCGTGGGCAGCACCAGCTTGTACCAGCGCTCCAAGATCTTCA
GCGGGGTCGGAGTGGGGTCGTCAGCGGGAGTGAGCACGGAAAACGCCTCCTCGGCCGTGGTCTTG
CACTGAGGGATGTGCTCAACCAACAGCAACACCCCGAGCACGATGCACTGCCAGTTGCCGTCCTT
GAAGTTGCGCTTTTGCAAGCGCTCCCACCACGGGGTGTTGCGGTAGTTGAGTACGTGCTGGAGCG
GTGTCGGTTCCTCCTCGTCCTCGGAGGCCAGGGCGGGAGCTGGCAGCTCGGTGCGGGCACGTTTC
AGCGGTGGGCGGCCGCGGCCACGCCCGTTGCGGGTTCGTTTGCCCGAGGGGGCCACTTCGTCCTC
GGAGTCCGACACCTCCACCACGTGACCGTTGGCGTCGCCGTTGAG
Right flanking sequence: Indices 149198 -- 149697
CCGCGTCGTGATTGTCTTCCTTGTCCTCCTTGTCCTCCTTATCGTCCTTATCGTCCTTTTCTTCG
TCCTTTTCTTCTTTGTCTTCCTCCTCCTCGTCCTCACTCTCCTCCTCCGCGGGCACAGTCACAAG
CAAGTCCATCTCCTTCTTGGGAGCGTTCAGAGCCACCGCGCCCAACACCGCACAGAAGATCTCGT
CCACAAGCACGCAGTTGCCGTGCTCGTCGTAGTCGTCCCAGTCCCACCGCATAGCCACCACAAAG
TCGTCAAACGTGAACGCATCGATTTTGAGCGCGACGTGGAAAATGTTGATGAACGACCAGCACCG
GAGGGCGTCAGCAATCACGTCGGCAAACACCTTTTCGCGCTTGCCCTCGGGACGGACGTCACCTG
CGGGTGCTGTGAGAGTCAAGTCCTCCACCACCTGCTTGGCGCTGCCCACATGGTCCAAGTTCTTG
GGCTTTCTGTCCTTGTCGCGACGTCTGCCGTCGGGAACGGGGGTT
Found at i:149263 original size:12 final size:12
Alignment explanation
Indices: 149248--149273 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
149238 ATCGTCCTTA
149248 TCGTCCTTTTCT
1 TCGTCCTTTTCT
149260 TCGTCCTTTTCT
1 TCGTCCTTTTCT
149272 TC
1 TC
149274 TTTGTCTTCC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.00, C:0.35, G:0.08, T:0.58
Consensus pattern (12 bp):
TCGTCCTTTTCT
Left flanking sequence: Indices 148748 -- 149247
TGTACCAGCGCTCCAAGATCTTCAGCGGGGTCGGAGTGGGGTCGTCAGCGGGAGTGAGCACGGAA
AACGCCTCCTCGGCCGTGGTCTTGCACTGAGGGATGTGCTCAACCAACAGCAACACCCCGAGCAC
GATGCACTGCCAGTTGCCGTCCTTGAAGTTGCGCTTTTGCAAGCGCTCCCACCACGGGGTGTTGC
GGTAGTTGAGTACGTGCTGGAGCGGTGTCGGTTCCTCCTCGTCCTCGGAGGCCAGGGCGGGAGCT
GGCAGCTCGGTGCGGGCACGTTTCAGCGGTGGGCGGCCGCGGCCACGCCCGTTGCGGGTTCGTTT
GCCCGAGGGGGCCACTTCGTCCTCGGAGTCCGACACCTCCACCACGTGACCGTTGGCGTCGCCGT
TGAGTGTCCCGTTGGCGGTCTCGTTGGCTGTCTCGTTGGCTGTCTCGTTTGCAGTCTCGTCCGCG
TCGTGATTGTCTTCCTTGTCCTCCTTGTCCTCCTTATCGTCCTTA
Right flanking sequence: Indices 149274 -- 149773
TTTGTCTTCCTCCTCCTCGTCCTCACTCTCCTCCTCCGCGGGCACAGTCACAAGCAAGTCCATCT
CCTTCTTGGGAGCGTTCAGAGCCACCGCGCCCAACACCGCACAGAAGATCTCGTCCACAAGCACG
CAGTTGCCGTGCTCGTCGTAGTCGTCCCAGTCCCACCGCATAGCCACCACAAAGTCGTCAAACGT
GAACGCATCGATTTTGAGCGCGACGTGGAAAATGTTGATGAACGACCAGCACCGGAGGGCGTCAG
CAATCACGTCGGCAAACACCTTTTCGCGCTTGCCCTCGGGACGGACGTCACCTGCGGGTGCTGTG
AGAGTCAAGTCCTCCACCACCTGCTTGGCGCTGCCCACATGGTCCAAGTTCTTGGGCTTTCTGTC
CTTGTCGCGACGTCTGCCGTCGGGAACGGGGGTTCCGCCCGCAGGGGTCGCGGGAACGGGTACTC
CAGGTGTCAGCTCAGCGTACTGCAACAAGTCTTCCGGGTAGTCCT
Found at i:160642 original size:11 final size:11
Alignment explanation
Indices: 160628--160665 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
160618 ACACCCAAGA
160628 AACCACCAAAC
1 AACCACCAAAC
*
160639 AACCACTAAAC
1 AACCACCAAAC
160650 AAACCACCAAA-
1 -AACCACCAAAC
160661 AACCA
1 AACCA
160666 TTGGGCTATT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
10 5 0.21
11 10 0.42
12 9 0.38
ACGTcount: A:0.58, C:0.39, G:0.00, T:0.03
Consensus pattern (11 bp):
AACCACCAAAC
Left flanking sequence: Indices 160128 -- 160627
GTTGTCAGTGAGGTTGCGCAACACCCGTTTGTCAAACAGGTAGCGGCCGGTGAGGTCGGCAAACA
GCCCGATGGGGTGGGGCACGTCCTCCCCAGTAACCCGGATCTGCTGCACCGCACGCAAGCGCTCG
GCGTCGTGGGGGGTAGCCACAGTGAGCGGAGCCACCTCTTCTTCCTCCTCAGGCTCCTCCTCGGC
TTTTTGTTCCGGTTCCGGCTTGTGCTTCTTGGTGTGGAAAAAGTCAAGCTCGCGGTCGACCTGTG
TCTGGAGGTTTTCCTCCTTTTTCGCCATCAGCGCCTCTTGGGCTGCTGTCGGAAGAGCAAAGTCG
GCCGATGCCTTCTTGCTTTTCTTGATCAGCGCCCCTCGACTGAGAATGCGGAAGATGTCCATGGT
AGGTGGTGCCTGGTCTGTTCGCGATGCTCATCTAGTGGTGCGCGCGGGCTACAAACCAAAACGTG
CATAATACAACAGTAGACATGTCAGGACAAAACTGACACCCAAGA
Right flanking sequence: Indices 160666 -- 161165
TTGGGCTATTCACCTACCTTTCTACTCAACCCTCTTTCCGCGCTCTCTTCCTATGTCTATTAAAT
GCAAAACCTATCCCATTAATCTCTCGGCCAACGCCTCCAAGTCCTCGACGGTCTCGGGCTGGTCG
ATCTCGACCACCTCGGGCCGCGACTGCGTCTCGTCGTCGTCCTTCCACCACTTGGCGGCCTTCTT
GCGCGGCTGCTCGTCGTCCGACGGCTCCATGTCCGCCTCCAACTGGGCCTCCCACGCGCGCTCGG
CCTCCTTGCGCTTGCGCTTCTTCTCCTTCTTCTTCTCCTTGGCCAACGCCTTGTCGCCCGCGTCG
GCCATCGCCATGACTTCGGCTTCCTTGGCCACAAACTGCTGCTTCTGCTCGGCAGCGTCACCAGC
AGCGGCAAAGTCCTCCTCGTCCTGCAACTCGTACAACGGGTGGGCCACGCCTTCGTCGTCGAACT
TGAGCTTGGTGGGGTTGCCCTTGGCCGCGAGCGATGCCTTGCGCA
Found at i:180343 original size:18 final size:18
Alignment explanation
Indices: 180320--180357 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
180310 GAGGGGTGTC
* *
180320 GCCTGCGTAGGTGGTCTG
1 GCCTGCGAAGGTGGCCTG
180338 GCCTGCGAAGGTGGCCTG
1 GCCTGCGAAGGTGGCCTG
180356 GC
1 GC
180358 TGTCGTAGCC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.08, C:0.26, G:0.45, T:0.21
Consensus pattern (18 bp):
GCCTGCGAAGGTGGCCTG
Left flanking sequence: Indices 179820 -- 180319
ACGCACTTGTTGAAGAGCCCGTACCAGTTGCTGACGTCACCGGAACACACCTGGATCCCCAACAG
AATGAGGTAGAACGAAAACAGCACAAACAACACGTCCTTGTCGAGGCCTGCCTCGCGCTCGAGCG
CCTCGCGTGCGCGCTTGAGGTACCGGTTGACGATGGCCAAGTCCTGGTCGCGAAACAACGCACCC
CACGCGGCAATGGCGTTGGAAATGCACTCGTGGCCTGCGGCAGCGGCAAAGAACGTCTTGAGAAA
GTAGTTGGAGCTGGTGGGCAGCATCGACAAGAGCGGGGCCACCTGGGACTCGAAGTACTCGAGGT
ACTCGAGCCCCGACGGGTCCAAAAAGAGATTGAACGTGGACAGCGGGGTGTTGAGGAACGAGAAG
TCGAACTCGGGGATCGAGTAGCTGGCGCTGCTCACGAGCGCCTGGGTGGTGGGGGTGTCGGGTTC
GAAGGAAGTGCTCACAACCGCTCGGGTTGGGTCACGAGGGGTGTC
Right flanking sequence: Indices 180358 -- 180857
TGTCGTAGCCCGCTAGCGCCTGGCTGCCGGGGGTGTACACGTCGATGACGTCACCGAAGATCTCC
TCCGAGTTGAGGAGGCTGGTCACGGGAAGCGGAGCCAGCTCCAGCTCGCGCATGGGCCACGGGTC
GGGTGCCCGCGCGGGCTGCGACGCTCGGCGGGTCTCGCTGGCGGCCCGGGCCATCGGCTCGCTGC
GCCGGCGCTCCACCCGCGGCTTGAGGGTGCTCACGGTGTAGTGCTTCATGCCCCACTCGCACTCG
AGCCCGCGCGTCGAGCACGACGAGCACTGGGGACGGGTTTCGTCGCACTTCTTCTTGCGACGGCG
GCAGGTGAGGCACCCGGTGCGGGAGCGGGTGCGTTTTGGCGGCACCCCCGAGTTGGCTGGCCCCA
ACGGGACCAACCGCTCGTTCATCGTGGAGAACATGGGGTACCGCTCGGCATCGGAGATCAAATAT
GCCGTGTGGGTTGTGTGCAGGACCGTCAGTAGCCGGGACGGGAGG
Found at i:184972 original size:17 final size:17
Alignment explanation
Indices: 184950--184999 Score: 75
Period size: 17 Copynumber: 3.0 Consensus size: 17
184940 ACGTGACCGC
184950 CCTGTGACGCTACGCGA
1 CCTGTGACGCTACGCGA
184967 CCTGTGACGCTACGCGA
1 CCTGTGACGCTACGCGA
* *
184984 -TTGTGACGATACGCGA
1 CCTGTGACGCTACGCGA
185000 TTGTGACACA
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
16 14 0.45
17 17 0.55
ACGTcount: A:0.20, C:0.30, G:0.30, T:0.20
Consensus pattern (17 bp):
CCTGTGACGCTACGCGA
Left flanking sequence: Indices 184450 -- 184949
CCACGGGTGGGCCAGGGGTGCCCGCAGCAAGGGCCAGGCACCGCCAGCTGGTGGCCCGGGGTCCG
GGCGACGCTCTCCCTGCACGCCTTCCCGGTTGCGGCAACCCAGCCGTGCCTGACCCACCCATTAT
AGCCCCTATCGGCTGCGGGGCTGCTAACCGCACCGTTGCCACACGACAATAGCCAGTCACTCGCG
TCATCGCCTGGCATTTTCCGAGCCGCGCGAGCTAATGGGACCTAGCGATGAGTGTGTGGGGTAGG
GTGGGGAGTGTTGAAGTGAGAGAGGCTGGGTAGGGGTGTGGTTGAGTCTATGGTGGAGAATATAG
TGGACATTAAAGTAGAGATTAGTAGAGATAGCAGAGACTACATGAGATGAGATGAGTAATGATAT
TGAGTCCAGACGAGTACAGATGAGTCCAGACTATCCCAGTACACCAGCCGATATCTTCAGGTGAT
CACACGAACACTGGCAGACTGTGTGACTAGTGGCTACGTGACCGC
Right flanking sequence: Indices 185000 -- 185499
TTGTGACACACCCGATAAACCCGTTCATTAACAATTACTACACTCCGTCTAATACTTCGACTTGT
CCAGCACCAACTGCAAGAGCAAGTCCTGCAACTGGCGACGGCCCTTAGCCGCCTTCCAGATTTTG
TGGTTCAGGTTCTCGGCAATCACCCACTCGATGCAGTGCGAACTCAACTTGGAGAGCTCGCGCTG
CCACTTACCCCAGTTCAACGACGTCTTGATCATGTAGTCCGACGAGATCACCCCCAACGGCACGT
CGCGGAGATCGGCCCCGCGCACCTCGTTGTACGAGAGAATGCCCAGCGTCAACTGCTCCTGCAAC
CGCGCTCTAATGTACTTCAGACTCCACCGCATGTCGCGGCCATAAATCCGGTTCTTGCTCGAATA
ACTCCGCGGGTGGAACAACCAGTGGAACTCGGGCACGACGCCAAACGGCGAGAAAATGCCCCGGA
GCCACAACCGGAACCCGGTCAAGTTGTTCATAAACTCGAGGATCC
Found at i:184990 original size:16 final size:16
Alignment explanation
Indices: 184952--185006 Score: 83
Period size: 16 Copynumber: 3.4 Consensus size: 16
184942 GTGACCGCCC
*
184952 TGTGACGCTACGCGACC
1 TGTGACGCTACGCGA-T
184969 TGTGACGCTACGCGAT
1 TGTGACGCTACGCGAT
*
184985 TGTGACGATACGCGAT
1 TGTGACGCTACGCGAT
185001 TGTGAC
1 TGTGAC
185007 ACACCCGATA
Statistics
Matches: 36, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
16 21 0.58
17 15 0.42
ACGTcount: A:0.20, C:0.25, G:0.31, T:0.24
Consensus pattern (16 bp):
TGTGACGCTACGCGAT
Left flanking sequence: Indices 184452 -- 184951
ACGGGTGGGCCAGGGGTGCCCGCAGCAAGGGCCAGGCACCGCCAGCTGGTGGCCCGGGGTCCGGG
CGACGCTCTCCCTGCACGCCTTCCCGGTTGCGGCAACCCAGCCGTGCCTGACCCACCCATTATAG
CCCCTATCGGCTGCGGGGCTGCTAACCGCACCGTTGCCACACGACAATAGCCAGTCACTCGCGTC
ATCGCCTGGCATTTTCCGAGCCGCGCGAGCTAATGGGACCTAGCGATGAGTGTGTGGGGTAGGGT
GGGGAGTGTTGAAGTGAGAGAGGCTGGGTAGGGGTGTGGTTGAGTCTATGGTGGAGAATATAGTG
GACATTAAAGTAGAGATTAGTAGAGATAGCAGAGACTACATGAGATGAGATGAGTAATGATATTG
AGTCCAGACGAGTACAGATGAGTCCAGACTATCCCAGTACACCAGCCGATATCTTCAGGTGATCA
CACGAACACTGGCAGACTGTGTGACTAGTGGCTACGTGACCGCCC
Right flanking sequence: Indices 185007 -- 185506
ACACCCGATAAACCCGTTCATTAACAATTACTACACTCCGTCTAATACTTCGACTTGTCCAGCAC
CAACTGCAAGAGCAAGTCCTGCAACTGGCGACGGCCCTTAGCCGCCTTCCAGATTTTGTGGTTCA
GGTTCTCGGCAATCACCCACTCGATGCAGTGCGAACTCAACTTGGAGAGCTCGCGCTGCCACTTA
CCCCAGTTCAACGACGTCTTGATCATGTAGTCCGACGAGATCACCCCCAACGGCACGTCGCGGAG
ATCGGCCCCGCGCACCTCGTTGTACGAGAGAATGCCCAGCGTCAACTGCTCCTGCAACCGCGCTC
TAATGTACTTCAGACTCCACCGCATGTCGCGGCCATAAATCCGGTTCTTGCTCGAATAACTCCGC
GGGTGGAACAACCAGTGGAACTCGGGCACGACGCCAAACGGCGAGAAAATGCCCCGGAGCCACAA
CCGGAACCCGGTCAAGTTGTTCATAAACTCGAGGATCCCCTTGAA
Found at i:188415 original size:14 final size:14
Alignment explanation
Indices: 188398--188435 Score: 53
Period size: 12 Copynumber: 2.9 Consensus size: 14
188388 GCACCTGCCG
*
188398 TGATACACCTATCA
1 TGATACACCTACCA
188412 TGAT--ACCTACCA
1 TGATACACCTACCA
188424 TGATACACCTAC
1 TGATACACCTAC
188436 AACAGTACAC
Statistics
Matches: 21, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
12 11 0.52
14 10 0.48
ACGTcount: A:0.34, C:0.32, G:0.08, T:0.26
Consensus pattern (14 bp):
TGATACACCTACCA
Left flanking sequence: Indices 187898 -- 188397
GCAGATCCACAAGGACCAGGACCACGAGGTGGAGCAGTTGCGCCAGATCGTCGCTCGCCAGCGGC
AATTGGGCCAGGCGATCGGGGACGAGGTCGACTCGCAGAACGAGATGATGGACCAGTTCAGCGAG
GAGATCGACCGCACCAAGGACAAGTTGGCGGGCGCCCGCGAGCGAGCGAAAAAGTTTACATAGCA
TTATAGAAAGAAAGAGGGATTGAAGCTTTAACCGTACTTGAGTATGGGTCTGCCCTGATTGTTGC
AGCCACGGCACGTGATCCGGGTAACTGGGCGCGTATAAAAGCCATTGCGAAAAAGTTTATTGTCA
ACGACAACCGTATGTATCCACGAATAATTCAGATGATGTGAACACTTTGCCTTACCGAAAGTCAT
GAGGATTCAACAAGTTTACACCAAGATCTACGCTGATGTCTTATCCAACGATTTACTAACAGAAA
AGAATAGGAAATATCGGATGAAGTAATGGATGGGTGCACCTGCCG
Right flanking sequence: Indices 188436 -- 188935
AACAGTACACAGCTCTAGCATGGATCACTACCTTGGCTTCACACGCCACTCCTCTCACGTCTTCC
TACGTCTTCCTACGTCTTCTCCCCTTTCCTTTCTATCTCTATTATTGATCTATGCATCTAAGTCT
GTAAACTCCGTGGTCAACATGATCACCAGGTCGCCCAGCACCGACGAGCGCGCGGTGCGCGCCAA
CGGGTCGTCTAGAACCTCCTTCTGGTGGCGCTTAATCTCTTCGCCCCAGAGCTTGATCCCAGCCT
CGATGTCCTCGGGCTCAAGGTACAGAATCAGCAACCGCACACAGTTCTTGCCCCAGCCCACGGGA
TCGCCCACCACCTCAAAGTTGGCCCCCAGGGCAAGCACCACCCCGTGCTTCTCGAGCGCAGTAAC
AACAGACTGGTGGTTGTCCACCCCCTCTACACGCACCCACAAAAAGTAGCCACCGTCGCCGCCCC
AGCTCTGTGTTCCAGCAGGCAAGTACTTCGCAATGGCGTCCTTGG
Found at i:188507 original size:10 final size:10
Alignment explanation
Indices: 188492--188519 Score: 56
Period size: 10 Copynumber: 2.8 Consensus size: 10
188482 CACTCCTCTC
188492 ACGTCTTCCT
1 ACGTCTTCCT
188502 ACGTCTTCCT
1 ACGTCTTCCT
188512 ACGTCTTC
1 ACGTCTTC
188520 TCCCCTTTCC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.11, C:0.39, G:0.11, T:0.39
Consensus pattern (10 bp):
ACGTCTTCCT
Left flanking sequence: Indices 187992 -- 188491
GACTCGCAGAACGAGATGATGGACCAGTTCAGCGAGGAGATCGACCGCACCAAGGACAAGTTGGC
GGGCGCCCGCGAGCGAGCGAAAAAGTTTACATAGCATTATAGAAAGAAAGAGGGATTGAAGCTTT
AACCGTACTTGAGTATGGGTCTGCCCTGATTGTTGCAGCCACGGCACGTGATCCGGGTAACTGGG
CGCGTATAAAAGCCATTGCGAAAAAGTTTATTGTCAACGACAACCGTATGTATCCACGAATAATT
CAGATGATGTGAACACTTTGCCTTACCGAAAGTCATGAGGATTCAACAAGTTTACACCAAGATCT
ACGCTGATGTCTTATCCAACGATTTACTAACAGAAAAGAATAGGAAATATCGGATGAAGTAATGG
ATGGGTGCACCTGCCGTGATACACCTATCATGATACCTACCATGATACACCTACAACAGTACACA
GCTCTAGCATGGATCACTACCTTGGCTTCACACGCCACTCCTCTC
Right flanking sequence: Indices 188520 -- 189019
TCCCCTTTCCTTTCTATCTCTATTATTGATCTATGCATCTAAGTCTGTAAACTCCGTGGTCAACA
TGATCACCAGGTCGCCCAGCACCGACGAGCGCGCGGTGCGCGCCAACGGGTCGTCTAGAACCTCC
TTCTGGTGGCGCTTAATCTCTTCGCCCCAGAGCTTGATCCCAGCCTCGATGTCCTCGGGCTCAAG
GTACAGAATCAGCAACCGCACACAGTTCTTGCCCCAGCCCACGGGATCGCCCACCACCTCAAAGT
TGGCCCCCAGGGCAAGCACCACCCCGTGCTTCTCGAGCGCAGTAACAACAGACTGGTGGTTGTCC
ACCCCCTCTACACGCACCCACAAAAAGTAGCCACCGTCGCCGCCCCAGCTCTGTGTTCCAGCAGG
CAAGTACTTCGCAATGGCGTCCTTGGTCACCTTTACCCGCAGTGCATAGGTCTCGACCAACCCCG
CGATAATTGAGTCCAGCTCTCCCAGCTCCACGAGCCGGGCCACCA
Found at i:203442 original size:10 final size:10
Alignment explanation
Indices: 203427--203474 Score: 62
Period size: 10 Copynumber: 4.8 Consensus size: 10
203417 CTGGAGATGA
203427 GAGAGGTCGG-
1 GAGAGGT-GGT
203437 GAGAGGTGGT
1 GAGAGGTGGT
203447 GAGAGGTGGT
1 GAGAGGTGGT
*
203457 GAAAGGTGGT
1 GAGAGGTGGT
*
203467 AAGAGGTG
1 GAGAGGTG
203475 ATAGATGGCT
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
9 2 0.06
10 32 0.94
ACGTcount: A:0.25, C:0.02, G:0.56, T:0.17
Consensus pattern (10 bp):
GAGAGGTGGT
Left flanking sequence: Indices 202927 -- 203426
GGCTCGCACGGGGAACAACGGCTCATCAAAGCTATCGCGGGTCATATCAATCTCGTTGGTACCTT
CTTCCAAAAAGTCAGGAGCCTCGTTGGCTTCCAGCCCGTTGTTGTACACCTGGTCTCCCGTCAAT
CCGAGCTTGTTCATGGTGGAACTGCCACCAAGCGACACCAGCCCCGCCAGGAGGGGACCCAGCAG
CACCACGTGGGTGCCCTCGTAGCGGTTGCGGCCACCACGAGCCCCACCACGACCTCGCCCACGGC
CACTAAAGCCTCCACGGGCTGGGGGCGATTCGGTCTTGACGGGCGCGTCCTTGGCACGCTCCATC
TCACTCTTCCGTGCCACCACCTTGGGTTTGAATTTGAGACTGGGTTTCTTTAGCGAGTCTAACCG
GTTGGACATGTTGTGGAGGTGCTGGTAGGGATCACTATAGGCTTTTTTGTCCCGATGAGACGCCG
CCAGTGTGCGGCTCAGGTTTGAGAGAGGAGAAGAACTGGAGATGA
Right flanking sequence: Indices 203475 -- 203974
ATAGATGGCTACTGATTTGCGGTTATTGAAGTTGGTTAGTTAACATATTGAATTGATGGATATTC
AAATAATTATAATCTCAAATCAAAAATAACACTCACCTACATTTACCCTTATTGAATTTCCTTTC
ACTGTTTATCTATCGTGGTATGCATTAACCGGCTACACCATCTGCGAGTAGTCCTTCAAGATCCC
CTTCATGTGGGTGTTGGTGATCTTTCCGCGGCGAGCCTTCTTTTGTTTCTTTTCCTCCTTGCGGA
CTTGCTTCTTCACCAACAGCGGGTCGGCGCCAGTAGGCTTCAAGCTCTGGTCAATCAACGCCTGG
TACAAGTTGTCGCCGTCAGGCACCTTGACCGCGGCCCACATGTCCTTGAACTCGTCGTCCACCAT
GTCCAACGGACCCCCGAGATTGGCCCAGATCAACCGGGGCGCGTTCTCCTTTTTGTTGCGCAACA
CAAGAATCCGGTTCTCCGCCTCCAACTCCTTGATTGCGTCCATAC
Found at i:214442 original size:12 final size:12
Alignment explanation
Indices: 214425--214450 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
214415 TGTGGGGTTA
214425 TGTGGGTCGTTG
1 TGTGGGTCGTTG
214437 TGTGGGTCGTTG
1 TGTGGGTCGTTG
214449 TG
1 TG
214451 ATGGCTTTGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.00, C:0.08, G:0.50, T:0.42
Consensus pattern (12 bp):
TGTGGGTCGTTG
Left flanking sequence: Indices 213925 -- 214424
TGGCACCGGGCTTGCCCGACCCGTCGGGGGCACTGTCCTCCAGCAACATCACGAAGCTGGCGTCC
AACCCGTTGAGACTGGCGGCGCTGGAGCCCGCGGTCTGGATCCCCGAGGTGGTGTGGTCGGAGGT
GTCGTCGTCGTCGCTCTCCAGCTCGATGAGGTTGCGGTAGTACACTGGTTTCAGCCCTGCAACAG
CTGTTGCTTCTCGAAGCGTCTCTAGTCTCTCGTGTGGGAGATACTCGCTGAGGTCCACGGGCTCC
TCCTCCTGTGTCTGGGGGGTCTTGGACACGAGCAACGACAATTGGGCGCGATTGAGGCGGAGAAG
CGACTCGTCGAGGGTGAGGGGGGCGTCACACCCGTCGCATTGGAGTGGAGACTGGCTCCTTTCCG
GGCGAGACCGCGTGTGCTTGCCCATAGTGATAACGGTTGCCGATCACGCGCGCTGTATGGTGGCG
GGCACGTGCAAGACGGGAGGAGAGAAGAAGAAGGATGTGGGGTTA
Right flanking sequence: Indices 214451 -- 214950
ATGGCTTTGTAGTTCCTGTTGGGATGTTTACTGAGTTCTGAGGTGTAGTCGTAGTGGGGTGGATT
CCATACTGCGTAGCAGGATACATCCTGGAGTAGATAGTGCGACCACTAGGACGCCAGGCAAAGAG
CTACAAACCGTCCCTTCAGCCTGTTTTGCCACCACCAGGCTTGCTGCCAGCCAATCCAGCATACC
ACCTCCAAACCACCCGCGTCACTGTCTACCCTACCGCCCCCACTTACCCTACCTTCCTGCACACA
CCCACCACACTTAAAAGCAGCGGCCCCGTTTTTTTTCACCTCATCACAACCAGTATGTACATTTT
ATGATGATTACTTGATCAATGCTTGATTTCCTGAGAGCATTATGATTTCTCAATAGACTACAACG
GTATCTGACGAACACTACTAACATCCCAGATGGCCAAGCGCAATGCCCGCCAACTAAATAGCGTG
TACAAGCGTCCTATCCCCCTCGCGGTGATGGCGTTGCCGGAGCTC
Found at i:241988 original size:20 final size:20
Alignment explanation
Indices: 241963--242012 Score: 82
Period size: 20 Copynumber: 2.5 Consensus size: 20
241953 AATCATCTCC
241963 CAAGCTAACTAGATCACACA
1 CAAGCTAACTAGATCACACA
*
241983 CAAGCTAACTAGATCACACC
1 CAAGCTAACTAGATCACACA
*
242003 CAGGCTAACT
1 CAAGCTAACT
242013 TGACCACCCA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.40, C:0.32, G:0.12, T:0.16
Consensus pattern (20 bp):
CAAGCTAACTAGATCACACA
Left flanking sequence: Indices 241463 -- 241962
CAGAGAGGAGATAACGTTTAACGGCTGTGGGGAAGAGGAGGGGGAGGAGGGTAGAGTGGGCGGGA
GGAGGTGGTGTGGACGGAGGTGTAGAGGGAGGCGAGGGGGAGGCGGGAGGAGGCGGATTTGTGGC
AGATGATTTTGTGCCATGGCTGTGGAAGACGACTGCGCGGAAGTGGGTGAGGGTGTGTGGTGGGG
GAGACCCTCGGAGTTGCTTCTACGCGTCGATTAGTGGTGGTTGTGGCTGTTCAAGCCTAGATAGT
CACATGTAGCAACCCTACGAGGCTCAATTGTGGGTTCGCTCCGTCACGCGACAGACAGACACCAT
CTAGAATCACAGACGACAAAACCAGACTGTATCAAAGACTGACACAGATTGTGACGTAGTATCTT
ATAAAAGTTAACCCAAGTATTTACTGACGACAACTCAGATCACAACCCCGGCCCAGAACACCTCA
ATCCAACTACAGACACGCTACCTGGGAGACAACTCAATCATCTCC
Right flanking sequence: Indices 242013 -- 242512
TGACCACCCAACCTATCCTAGACCCAACTTATCCTAGACCCAATCTATCCTAGACTCAGCCTACT
CCACTAAAGACCTTTCAATCTTACTACATAATGCTCTGTATACATGCACTACTCCTGCTGGTGGA
GCTGGTTGCGGAACTGGAGACTCTCCTCCTTCTTCAACAAAAAGTCCTTGCGCCGCACAGCGGCA
TGGGACCGCATGGCGTTGGCGGCCGACTGAGCGGGGCCCCGCGTGATCACGGCAAAGTTCTTCAA
AATGCGGTTGGCGTAGTTGGTGGGCATGTCCTCCTCCTCCAGATACTCGGGCACCCCGGTAAACC
GCACCATTTTCTTCACCAGCAGCAGCGCCAGCAACTCCGTCAGCAGACACTCGGGGCTCGCCAGC
GACTCCAGCACGGGGGCCAGCGCGTCGTCGATCAACACCGAGTTGCGTGCGGTGTTGCGGCGCGT
TTGCACGTCGCGAGGCGTGGGTTTGCCCAAGAACGTGGGCTGGGT
Found at i:242039 original size:16 final size:16
Alignment explanation
Indices: 242018--242067 Score: 82
Period size: 16 Copynumber: 3.1 Consensus size: 16
242008 TAACTTGACC
242018 ACCCAACCTATCCTAG
1 ACCCAACCTATCCTAG
*
242034 ACCCAACTTATCCTAG
1 ACCCAACCTATCCTAG
*
242050 ACCCAATCTATCCTAG
1 ACCCAACCTATCCTAG
242066 AC
1 AC
242068 TCAGCCTACT
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 31 1.00
ACGTcount: A:0.32, C:0.40, G:0.06, T:0.22
Consensus pattern (16 bp):
ACCCAACCTATCCTAG
Left flanking sequence: Indices 241518 -- 242017
GTGGGCGGGAGGAGGTGGTGTGGACGGAGGTGTAGAGGGAGGCGAGGGGGAGGCGGGAGGAGGCG
GATTTGTGGCAGATGATTTTGTGCCATGGCTGTGGAAGACGACTGCGCGGAAGTGGGTGAGGGTG
TGTGGTGGGGGAGACCCTCGGAGTTGCTTCTACGCGTCGATTAGTGGTGGTTGTGGCTGTTCAAG
CCTAGATAGTCACATGTAGCAACCCTACGAGGCTCAATTGTGGGTTCGCTCCGTCACGCGACAGA
CAGACACCATCTAGAATCACAGACGACAAAACCAGACTGTATCAAAGACTGACACAGATTGTGAC
GTAGTATCTTATAAAAGTTAACCCAAGTATTTACTGACGACAACTCAGATCACAACCCCGGCCCA
GAACACCTCAATCCAACTACAGACACGCTACCTGGGAGACAACTCAATCATCTCCCAAGCTAACT
AGATCACACACAAGCTAACTAGATCACACCCAGGCTAACTTGACC
Right flanking sequence: Indices 242068 -- 242567
TCAGCCTACTCCACTAAAGACCTTTCAATCTTACTACATAATGCTCTGTATACATGCACTACTCC
TGCTGGTGGAGCTGGTTGCGGAACTGGAGACTCTCCTCCTTCTTCAACAAAAAGTCCTTGCGCCG
CACAGCGGCATGGGACCGCATGGCGTTGGCGGCCGACTGAGCGGGGCCCCGCGTGATCACGGCAA
AGTTCTTCAAAATGCGGTTGGCGTAGTTGGTGGGCATGTCCTCCTCCTCCAGATACTCGGGCACC
CCGGTAAACCGCACCATTTTCTTCACCAGCAGCAGCGCCAGCAACTCCGTCAGCAGACACTCGGG
GCTCGCCAGCGACTCCAGCACGGGGGCCAGCGCGTCGTCGATCAACACCGAGTTGCGTGCGGTGT
TGCGGCGCGTTTGCACGTCGCGAGGCGTGGGTTTGCCCAAGAACGTGGGCTGGGTGAACTCCTTG
GGCGCGATGATCCCCGCTGGGAGCGTCACCTGGCCCGGAGGCAAC
Found at i:244412 original size:12 final size:12
Alignment explanation
Indices: 244397--244433 Score: 65
Period size: 12 Copynumber: 3.1 Consensus size: 12
244387 GCGCGGGCGA
244397 GCTGGCAGTGCT
1 GCTGGCAGTGCT
244409 GCTGGCAGTGCT
1 GCTGGCAGTGCT
*
244421 GCTGGCGGTGCT
1 GCTGGCAGTGCT
244433 G
1 G
244434 GTGGTGGTGC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 24 1.00
ACGTcount: A:0.05, C:0.24, G:0.46, T:0.24
Consensus pattern (12 bp):
GCTGGCAGTGCT
Left flanking sequence: Indices 243897 -- 244396
GTGTCGAAGTCGGAGGGCGTGAGGCCCACCAAGTGGCGGAGCACGCTCACGTAGGCGGGGTCGGG
CTTGGCCAAGTCCAACCGCCGGCGGTACGCCGCAAGCACCTGTTTGCAGAGGCCCTCGAACGCAG
CCACGCACTTCTCCGACATCGCCACCGGCGGAAGGTCGTCCACGGGCACCACGGGGGTGTCCTGG
TGGTCGTACACCACGTGGGTAAACGTCTTGTCCGGGATCGCTGGCGGCGGCGACGTCTTGAAGAG
CTGGTAGTGGCTGACGTAGTCCACGCGCTGCGAGAGCGCCTGGTCCGCGATGTAGAACACCCCGG
GAGTGCAGCACGTGAGGTAGTGGAGCAACACGATGGCCCCCAGCCGCCGCTTCATCTCGTCGATG
TGCGCAAGCACGAGCTCGAGCTTGGCGATGGCGTACACGTGCTGGACCACCCGTGCGTCCTGCGA
CGTGAACTCGGGGCTGAAGTTGTACGCGGGCATGGGCGCGGGCGA
Right flanking sequence: Indices 244434 -- 244933
GTGGTGGTGCTGGCAGCCGGGCTGGCGGTGCTCAAGCTGTCCACGGACCCGTTGTCGGTGGGGGG
GTCAATCTTCACCGACGGAAGGGTTTTTTCGTCGCCCGAGCCGGAGGCGCTGTCGGGCGGCGTGA
TCCCGTCACAGACGTCGTCGACCTTGGTGGACGAGGTGGTGGTCAGCGACGGCAGCGCCAACAAC
AATCCGAGCGCGTCGTCCATGGTCAAATGTAGCAGCAGCAACACGCCGGCCGCGTCTGTCTCGGA
GTCGGACGCCTCGGGCGAGGGGGTGTGCACAGGCTTAGCGCGGGGTTTCAGCGTGGAGTCCTTGG
TGGACTCGGTGCTTGTGTTCCCTGGTGGTTTGTGACTCGCTTCATCTGTGGTGGACCCGCTGGTG
TCCTTTGTGGTGTTGGCTGTGCCAGAGGCGCTATCGTCTTTAGACTTGGGTTTGTTTTCGGTAGA
GCTAGCCTTGTTGGTCTGCTTCGAGTCCTTCTTGGAGTCCACCTG
Found at i:244442 original size:12 final size:12
Alignment explanation
Indices: 244399--244446 Score: 51
Period size: 12 Copynumber: 4.0 Consensus size: 12
244389 GCGGGCGAGC
* *
244399 TGGCAGTGCTGC
1 TGGCGGTGCTGG
* *
244411 TGGCAGTGCTGC
1 TGGCGGTGCTGG
244423 TGGCGGTGCTGG
1 TGGCGGTGCTGG
*
244435 TGGTGGTGCTGG
1 TGGCGGTGCTGG
244447 CAGCCGGGCT
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
12 33 1.00
ACGTcount: A:0.04, C:0.19, G:0.50, T:0.27
Consensus pattern (12 bp):
TGGCGGTGCTGG
Left flanking sequence: Indices 243899 -- 244398
GTCGAAGTCGGAGGGCGTGAGGCCCACCAAGTGGCGGAGCACGCTCACGTAGGCGGGGTCGGGCT
TGGCCAAGTCCAACCGCCGGCGGTACGCCGCAAGCACCTGTTTGCAGAGGCCCTCGAACGCAGCC
ACGCACTTCTCCGACATCGCCACCGGCGGAAGGTCGTCCACGGGCACCACGGGGGTGTCCTGGTG
GTCGTACACCACGTGGGTAAACGTCTTGTCCGGGATCGCTGGCGGCGGCGACGTCTTGAAGAGCT
GGTAGTGGCTGACGTAGTCCACGCGCTGCGAGAGCGCCTGGTCCGCGATGTAGAACACCCCGGGA
GTGCAGCACGTGAGGTAGTGGAGCAACACGATGGCCCCCAGCCGCCGCTTCATCTCGTCGATGTG
CGCAAGCACGAGCTCGAGCTTGGCGATGGCGTACACGTGCTGGACCACCCGTGCGTCCTGCGACG
TGAACTCGGGGCTGAAGTTGTACGCGGGCATGGGCGCGGGCGAGC
Right flanking sequence: Indices 244447 -- 244946
CAGCCGGGCTGGCGGTGCTCAAGCTGTCCACGGACCCGTTGTCGGTGGGGGGGTCAATCTTCACC
GACGGAAGGGTTTTTTCGTCGCCCGAGCCGGAGGCGCTGTCGGGCGGCGTGATCCCGTCACAGAC
GTCGTCGACCTTGGTGGACGAGGTGGTGGTCAGCGACGGCAGCGCCAACAACAATCCGAGCGCGT
CGTCCATGGTCAAATGTAGCAGCAGCAACACGCCGGCCGCGTCTGTCTCGGAGTCGGACGCCTCG
GGCGAGGGGGTGTGCACAGGCTTAGCGCGGGGTTTCAGCGTGGAGTCCTTGGTGGACTCGGTGCT
TGTGTTCCCTGGTGGTTTGTGACTCGCTTCATCTGTGGTGGACCCGCTGGTGTCCTTTGTGGTGT
TGGCTGTGCCAGAGGCGCTATCGTCTTTAGACTTGGGTTTGTTTTCGGTAGAGCTAGCCTTGTTG
GTCTGCTTCGAGTCCTTCTTGGAGTCCACCTGTGAGTCGACCTTC
Found at i:244980 original size:21 final size:21
Alignment explanation
Indices: 244942--245008 Score: 75
Period size: 21 Copynumber: 3.2 Consensus size: 21
244932 TGTGAGTCGA
*
244942 CCTTCGGAGAT-TTCCCGTCCT
1 CCTTCGGGGATGTT-CCGTCCT
244963 CC-TCTGGGGATGTTCCGTCCT
1 CCTTC-GGGGATGTTCCGTCCT
* *
244984 CCTTCGGGGTTTTTCCGTCCT
1 CCTTCGGGGATGTTCCGTCCT
245005 CCTT
1 CCTT
245009 GGTATCCTTA
Statistics
Matches: 40, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
20 2 0.05
21 34 0.85
22 4 0.10
ACGTcount: A:0.04, C:0.36, G:0.22, T:0.37
Consensus pattern (21 bp):
CCTTCGGGGATGTTCCGTCCT
Left flanking sequence: Indices 244442 -- 244941
GCTGGCAGCCGGGCTGGCGGTGCTCAAGCTGTCCACGGACCCGTTGTCGGTGGGGGGGTCAATCT
TCACCGACGGAAGGGTTTTTTCGTCGCCCGAGCCGGAGGCGCTGTCGGGCGGCGTGATCCCGTCA
CAGACGTCGTCGACCTTGGTGGACGAGGTGGTGGTCAGCGACGGCAGCGCCAACAACAATCCGAG
CGCGTCGTCCATGGTCAAATGTAGCAGCAGCAACACGCCGGCCGCGTCTGTCTCGGAGTCGGACG
CCTCGGGCGAGGGGGTGTGCACAGGCTTAGCGCGGGGTTTCAGCGTGGAGTCCTTGGTGGACTCG
GTGCTTGTGTTCCCTGGTGGTTTGTGACTCGCTTCATCTGTGGTGGACCCGCTGGTGTCCTTTGT
GGTGTTGGCTGTGCCAGAGGCGCTATCGTCTTTAGACTTGGGTTTGTTTTCGGTAGAGCTAGCCT
TGTTGGTCTGCTTCGAGTCCTTCTTGGAGTCCACCTGTGAGTCGA
Right flanking sequence: Indices 245009 -- 245508
GGTATCCTTACCGGCCTCCTTAGAGTCCTCTGCGTCCTCCTCAGCATCTTTCCCTGCTTGCTTAG
CATCCTTTCCGGCTTGCTTAGAGCCGTCGATCTCGGAGTCCTTGTCAGCGTCTTTCGCCTCGGAC
TTGTCCTTATCCGAATCCTTCACCTCCTCAGCGTCTCCTCCCGTTGCCTCCTCCGTCTTGGGCTC
CTTCTCTTTTCCCTCGTCAGCCGTTTCCTCCTCTGCAGCCTTGTCGTCGGAGGTTTTTCCGGCAC
CATCGGGTCCTGCCGGGGGTACCTCGCCGCCATTGGCACGCTGGCGGTCGTCAGCGACGGGGTCG
ACCCCCGTGGGGGAAGCGTCGCTTGGTTTGTCACCCATATATCTCGACTCTCACGGGGTTGGGTG
CTGGTAGACCTGGATCGTCCGGGATAAGGGTAGTGCGCGTTAGCTGCGGACGATCACGAACGCGC
GGCTCTAGTAGAGGTTGGAGAAGGGTAGCGCACACCACGGGGCTA
Found at i:245075 original size:21 final size:21
Alignment explanation
Indices: 245051--245094 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
245041 CGTCCTCCTC
*
245051 AGCAT-CTTTCCCTGCTTGCTT
1 AGCATCCTTT-CCGGCTTGCTT
245072 AGCATCCTTTCCGGCTTGCTT
1 AGCATCCTTTCCGGCTTGCTT
245093 AG
1 AG
245095 AGCCGTCGAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 17 0.81
22 4 0.19
ACGTcount: A:0.11, C:0.32, G:0.18, T:0.39
Consensus pattern (21 bp):
AGCATCCTTTCCGGCTTGCTT
Left flanking sequence: Indices 244551 -- 245050
TCGGGCGGCGTGATCCCGTCACAGACGTCGTCGACCTTGGTGGACGAGGTGGTGGTCAGCGACGG
CAGCGCCAACAACAATCCGAGCGCGTCGTCCATGGTCAAATGTAGCAGCAGCAACACGCCGGCCG
CGTCTGTCTCGGAGTCGGACGCCTCGGGCGAGGGGGTGTGCACAGGCTTAGCGCGGGGTTTCAGC
GTGGAGTCCTTGGTGGACTCGGTGCTTGTGTTCCCTGGTGGTTTGTGACTCGCTTCATCTGTGGT
GGACCCGCTGGTGTCCTTTGTGGTGTTGGCTGTGCCAGAGGCGCTATCGTCTTTAGACTTGGGTT
TGTTTTCGGTAGAGCTAGCCTTGTTGGTCTGCTTCGAGTCCTTCTTGGAGTCCACCTGTGAGTCG
ACCTTCGGAGATTTCCCGTCCTCCTCTGGGGATGTTCCGTCCTCCTTCGGGGTTTTTCCGTCCTC
CTTGGTATCCTTACCGGCCTCCTTAGAGTCCTCTGCGTCCTCCTC
Right flanking sequence: Indices 245095 -- 245594
AGCCGTCGATCTCGGAGTCCTTGTCAGCGTCTTTCGCCTCGGACTTGTCCTTATCCGAATCCTTC
ACCTCCTCAGCGTCTCCTCCCGTTGCCTCCTCCGTCTTGGGCTCCTTCTCTTTTCCCTCGTCAGC
CGTTTCCTCCTCTGCAGCCTTGTCGTCGGAGGTTTTTCCGGCACCATCGGGTCCTGCCGGGGGTA
CCTCGCCGCCATTGGCACGCTGGCGGTCGTCAGCGACGGGGTCGACCCCCGTGGGGGAAGCGTCG
CTTGGTTTGTCACCCATATATCTCGACTCTCACGGGGTTGGGTGCTGGTAGACCTGGATCGTCCG
GGATAAGGGTAGTGCGCGTTAGCTGCGGACGATCACGAACGCGCGGCTCTAGTAGAGGTTGGAGA
AGGGTAGCGCACACCACGGGGCTACGGCGCTATCATCACGGGGGGCCATCCGGACCATGTCTACG
TTGGTTGCTTGGTCTTTGTGTGTGTTCGACTGTGTCATGATCCAC
Found at i:254631 original size:24 final size:24
Alignment explanation
Indices: 254597--254642 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
254587 GTTCTAGTTC
*
254597 AGGAAAGGGTTCAAGCCAAGGCAA
1 AGGAAAAGGTTCAAGCCAAGGCAA
*
254621 AGGAAAAGGTTCCAGCCAAGGC
1 AGGAAAAGGTTCAAGCCAAGGC
254643 GGAAGTGGTG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.39, C:0.20, G:0.33, T:0.09
Consensus pattern (24 bp):
AGGAAAAGGTTCAAGCCAAGGCAA
Left flanking sequence: Indices 254097 -- 254596
TGTACTTTGGTACGCAAAAAAGGTCTGGACCAGGAAAGCGCTAGGTACACCGGAAACATGTCTTT
ATAACAGGCTGTATAAATAAGAGCAGCAAAATCTATCTCAAATAACAAATCAATCAACTACAAAC
ACAATATGAAAGTTTCTACCCTTGCCCCCGCTGCGGCAGCTTACCTTCTTCTCTCCGCCAACGGC
CTCCCGATTCTTGACTGGCGCCGTGGCTTTCGAGACCTGGGTGGTTCTGACCTGGGATCTTCCTT
ATCAGGGGCCAGTACTACTGAGAGTGGTTTTGGTCTGACTCCACTGTCTGGTGGCCGTGGCCTGT
CAGGCTCAGGTAAAGGCTCTGGTTTTGGTTCGCACTCGGGAAAAGGTCTGAAGTCATCGGAGTAT
GGCGGTGGCTCTGGCTCCGATGTGGGTTCTGGGTCCGGCAGTTCTGAAGAACAAGACGACTCGAG
TGCCGATTCAGGCTTGGAAACAAGCTCAGGAATGGGTTCTAGTTC
Right flanking sequence: Indices 254643 -- 255142
GGAAGTGGTGGATCTGGTAAAGGCCAAGGTCAGGGTCAGGGAAGCGGCCAGAGTGACAGTCAAGG
TCAGGGTCAAGGCCAAGGATCTGGCAACTCTTCCCTGTCCACAGAGCTCGAAGGTTCCTTTACGG
GCCAAGCCACATATTTCACCGACTCAATTGGTGCCTGCGGTAACTCCCTTGAACCTAATTCCGAG
TACTTTGTTGCCATTTCGCAAACTTTGTGGAATCAATTGGCTGGTGAAGGAGACACCAACCTGGC
ATGGATGTGCAACGGTTACTGGATTGACGTCAGTTACAATGGCAAGAGCGTTTCCGTGAAGTTGG
AAGACTTGTGCGAAAGCTGTGGCGAGAACGATGTCGACCTTTCGCAGAAGGCATTCAGTGACTTG
GCAGAGCTTGATGTTGGCGTTTTGGACGTGACTTGGTCGTGGAGCACTCAGGGAGGCGGCTCCAC
CAGCGGGTCGGGAGCTGCTAGTCCCGTCTCGGGTGAGGATACCTC
Found at i:255717 original size:12 final size:12
Alignment explanation
Indices: 255668--255784 Score: 71
Period size: 12 Copynumber: 9.5 Consensus size: 12
255658 CTGGTGACTT
255668 TGGCTCCTCTGG
1 TGGCTCCTCTGG
*
255680 TGGAT-CTCTGAG
1 TGGCTCCTCTG-G
*
255692 TGGCT-CT-T-C
1 TGGCTCCTCTGG
*
255701 AGGCTCCTCTGG
1 TGGCTCCTCTGG
*
255713 TGGCTCCCCTGG
1 TGGCTCCTCTGG
*
255725 TCTTACTGGCTCCTCCGG
1 ---T---GGCTCCTCTGG
255743 TGGCTCCTCTGG
1 TGGCTCCTCTGG
* *
255755 TGACTCTTCTGG
1 TGGCTCCTCTGG
*
255767 TGACTCCTCTGG
1 TGGCTCCTCTGG
255779 TGGCTC
1 TGGCTC
255785 TACAGGCGAC
Statistics
Matches: 81, Mismatches: 14, Indels: 20
0.70 0.12 0.17
Matches are distributed among these distances:
9 4 0.05
10 2 0.02
11 7 0.09
12 57 0.70
15 2 0.02
18 9 0.11
ACGTcount: A:0.05, C:0.32, G:0.29, T:0.33
Consensus pattern (12 bp):
TGGCTCCTCTGG
Left flanking sequence: Indices 255168 -- 255667
TCTATGGAGAATATGGAGAGAGAATTGGAAGATGCTGCGGGCACAAATGTCGAAGTCGAAGAGCC
AATTCCATCCACCAATCCCGTCGACGAGGGTCTGATGGGCACAGGTGGTGGAAAAATTGGCACTG
GTGGAGGGTTTAAAAAAGGTGGCCACCGTGGGCACTCAAAAGGCAACTCTTCTGAGGTGATTGGG
TCTGGCAACAGTACTGCTGGTCACCAGAATGGCCAGGGAGCTGGAACCTCTCTTGAACCTGGTAC
GAACGGTTTCGCAAGAAAGCAAAGCACTGGCGGCTCACAAGCATCTACAATTCCAATGGACATCA
CTGGAATGGAAGGTATGGGCGGTTCTACCTCTGGAGAAGCAGCTAGTGGCCAGCAAGGTGGTGGT
TCCTCTGGCAACGCTGGTGGCATTACCAATGAAACTGGGGAGACTGAGAATGAGGAGGCAGCTGG
TGGCTTTGGCTCATCCGACGGGTCTTCAAGTGGCTCTGGTGACTT
Right flanking sequence: Indices 255785 -- 256284
TACAGGCGACTCTTTTGACAACGCCACTGGTGACTCCACAGACATCTCCACCGGCGAATCCTCTG
ACAGTTCTACCGAGGGTTCCCCTGGTGGCTCCTCTGAATCCTCTGGCACCACCAACACTTCTGGC
GAGTCGGAGGACTGCCACGGTGACTCCGAAACGGGTGACTTCCAAGATAGCGACAGTGAAGAGAG
CGGTGCTCCAACCGACTCAATTCCTGAACTCGACGCTACGGAAACCAGCACGCCCGACCCCCAGG
TGAGCGCGGCGCTCTACGAAGGTGCATAGACTTGGGCCCTGGTTGGTGACCTAAGCCACACGGCA
ACCCTTAGCTTGATTTAGAATATAGTGATACACAAAGCATTTTCTCAGAAACAAAACACGACAAC
CAATTGCCAACCACCGAACGCTCTACCCATAGCCCCCACACCTTATCGCCCCCTGCATTCGCAGC
CCCATTTGTTCCCCTCGCCATGTGGCACCCAAAATTAGTCGTGCG
Found at i:255795 original size:24 final size:24
Alignment explanation
Indices: 255746--255796 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
255736 CCTCCGGTGG
* * *
255746 CTCCTCTGGTGACTCTTCTGGTGA
1 CTCCTCTGGTGACTCTACAGGCGA
*
255770 CTCCTCTGGTGGCTCTACAGGCGA
1 CTCCTCTGGTGACTCTACAGGCGA
255794 CTC
1 CTC
255797 TTTTGACAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.10, C:0.33, G:0.25, T:0.31
Consensus pattern (24 bp):
CTCCTCTGGTGACTCTACAGGCGA
Left flanking sequence: Indices 255246 -- 255745
AATCCCGTCGACGAGGGTCTGATGGGCACAGGTGGTGGAAAAATTGGCACTGGTGGAGGGTTTAA
AAAAGGTGGCCACCGTGGGCACTCAAAAGGCAACTCTTCTGAGGTGATTGGGTCTGGCAACAGTA
CTGCTGGTCACCAGAATGGCCAGGGAGCTGGAACCTCTCTTGAACCTGGTACGAACGGTTTCGCA
AGAAAGCAAAGCACTGGCGGCTCACAAGCATCTACAATTCCAATGGACATCACTGGAATGGAAGG
TATGGGCGGTTCTACCTCTGGAGAAGCAGCTAGTGGCCAGCAAGGTGGTGGTTCCTCTGGCAACG
CTGGTGGCATTACCAATGAAACTGGGGAGACTGAGAATGAGGAGGCAGCTGGTGGCTTTGGCTCA
TCCGACGGGTCTTCAAGTGGCTCTGGTGACTTTGGCTCCTCTGGTGGATCTCTGAGTGGCTCTTC
AGGCTCCTCTGGTGGCTCCCCTGGTCTTACTGGCTCCTCCGGTGG
Right flanking sequence: Indices 255797 -- 256296
TTTTGACAACGCCACTGGTGACTCCACAGACATCTCCACCGGCGAATCCTCTGACAGTTCTACCG
AGGGTTCCCCTGGTGGCTCCTCTGAATCCTCTGGCACCACCAACACTTCTGGCGAGTCGGAGGAC
TGCCACGGTGACTCCGAAACGGGTGACTTCCAAGATAGCGACAGTGAAGAGAGCGGTGCTCCAAC
CGACTCAATTCCTGAACTCGACGCTACGGAAACCAGCACGCCCGACCCCCAGGTGAGCGCGGCGC
TCTACGAAGGTGCATAGACTTGGGCCCTGGTTGGTGACCTAAGCCACACGGCAACCCTTAGCTTG
ATTTAGAATATAGTGATACACAAAGCATTTTCTCAGAAACAAAACACGACAACCAATTGCCAACC
ACCGAACGCTCTACCCATAGCCCCCACACCTTATCGCCCCCTGCATTCGCAGCCCCATTTGTTCC
CCTCGCCATGTGGCACCCAAAATTAGTCGTGCGCAACCCAAGCCG
Found at i:257979 original size:16 final size:17
Alignment explanation
Indices: 257948--257985 Score: 51
Period size: 16 Copynumber: 2.3 Consensus size: 17
257938 AGAGGTGGGA
*
257948 GTGGTGAGGTGGTGAAG
1 GTGGTGAGGAGGTGAAG
257965 GTGGTGA-GAGGTGAAG
1 GTGGTGAGGAGGTGAAG
*
257981 TTGGT
1 GTGGT
257986 AGAATTGAAG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
16 12 0.63
17 7 0.37
ACGTcount: A:0.18, C:0.00, G:0.55, T:0.26
Consensus pattern (17 bp):
GTGGTGAGGAGGTGAAG
Left flanking sequence: Indices 257448 -- 257947
CCGTCAGTTGTACAACCGTGGTATCTACCCGCCCATCAACGTGTTGCCGTCGCTTTCGCGTCTTA
TGAAGTCGGCCATTGGTGAGGGCATGACCCGTAAGGACCACGGTGACGTGTCCAACCAGTTGTAC
GCCAAGTACGCCATTGGTCGTGACGCTGCCGCCATGAAGTCCGTCGTCGGTGAGGAGGCGTTGTC
TACCGAGGACAAGTTGTCGCTCGAGTTCTTGGAGAAGTTCGAGAAGCAGTTCATTGCCCAGGGTG
CCTACGACAACCGGACCATTTTCGAGTCGTTGGACTTGGCGTGGTCGTTGTTGCGGATCTACCCC
AAGGAGATGTTGAACAGAATCTCCCCCAAGATCTTGGACGAGTTCTACGAGCGCGGTCGCGACGC
CGACGACGACGCCAAGGAGGACGAGAACAAGGACGTCACCGGCGACAACTTGGTTGACGTTTAGT
TATGCAGAATAAAAATAAATGCCGAAGATACGAAAAGAGGTGGGA
Right flanking sequence: Indices 257986 -- 258485
AGAATTGAAGCTATCGGATCGATTTGTGTGCTGCTGAAGCTGAAGGCAAGCCATCAAAGATCACA
GCAAATTAGTTGGCGAGTTAGTGGACTGCGTAAGTCGATGGACCCAATCATCGGTAAACGATGTC
ACATTTTAGTGAATTGTTCAAGTTGGACTTGAAGTAGGTTTTGATGTTGTGCTCTAAGTCAGTGA
ACGAATTTCTACTCCACGCCAATTTCATTTCCCCACTACCCATTACCTCCGATCGTAATATTCAT
ATCCTATATACAGAGCCTAACGGCCAACGTTGAACAAGAGCTTGTTGCCGTCCTCACCGTCACCC
TTGCCACCGGGAACATAGGTGATGTTGGGCGATGAAGCAAGCGTCTGGGCAATGTCCTTGGACGC
CTCAAGACGACGGATCTTCAAGAGACCGTCACCGGACTTGGCAAGCGCCTTCAGCACCAAGTCAG
CCAGCTCGGCCTCACCCTCAGCGCGGATAACGTTGGCACGACGCT
Found at i:269010 original size:39 final size:39
Alignment explanation
Indices: 268960--269036 Score: 118
Period size: 39 Copynumber: 2.0 Consensus size: 39
268950 AGGTCCACGT
**
268960 CTCAAACTACGCGTACAACGTCGCTGACCACCACTGGTA
1 CTCAAACTACGCCCACAACGTCGCTGACCACCACTGGTA
* *
268999 CTCAGACTACGCCCACCACGTCGCTGACCACCACTGGT
1 CTCAAACTACGCCCACAACGTCGCTGACCACCACTGGT
269037 CCTACGACTC
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
39 34 1.00
ACGTcount: A:0.25, C:0.40, G:0.18, T:0.17
Consensus pattern (39 bp):
CTCAAACTACGCCCACAACGTCGCTGACCACCACTGGTA
Left flanking sequence: Indices 268460 -- 268959
CACGTTCAATGTCAAGGTCACCTACGACCCTCGCACTGGACGCTGTTGCTTACCTCCAACCCTTC
AAATCGATTGTGATTTCATCGATGATGGCAGTGATTGTGTTCGTGCCATTAAGAACACCTGGGGC
CGTTGTGGATGGAGACATAAGCTCGATTGTTATGACAATGTCAAAAAGGTGAAACCGAGAGACTG
CTATTCTCGCATCAAGTCGAGATGGGGCGGCATGTACAAGCGTGAAGAAGACGAAGACCTTGACA
ATGTAAGACGTACTTTTGGACGGTATTCGTACCAAGATTGTTGGGGTGTGTTCACTCGTTGCTCC
CGTGGCCATGGCAAAGTTTTGCAGTATTGCTGGGATTGCCGTTGCGACCCCCCTCCCCACACCAC
CAGAACTACCACGACCACTCTGAGAACTCTGACACCACCTCCCACAACACGGACCACGTCCACGC
GCACCACTTCTGATACCACGTCGCTGACTACCACCAGGTCCACGT
Right flanking sequence: Indices 269037 -- 269536
CCTACGACTCTGACTACGTCTACTGGTCCTACTACGTCGCTGCACACCACTGGTACCCAGACTAC
GCCTACGACGTCGCTGACCACCACTGGTACTCAGACTACGCCTACGACGTCGCTGCACACCACTG
GCACCCAGACTACGCCTACGACGTCGCTGCACACCACTGGCACTCAGACTACGCCTACTACGTCG
CTGCACACCACTGGTACTCAGACTACGCCTACCACGTCGCTGCACACCACTGGCACTCAGACTAC
GCCTACGACTTCGCTGCACACCACTGGTCCTACGACTCTGACTACGTCTACTGGTCCTACTACGC
TGCACACCACTGGTACCCAGACTACGCCTACCACGTCGCTGACCACCACTGGCACTCAGACTACG
CCCACCACGTCTCTGACCACCACTGGTCCTACGACTCTGACTACGTCTACTGGTCCTACTACGTC
GCTGCACACCACTGGTACCCAGACTACGCCTACGACGTCGCTGAC
Found at i:269124 original size:39 final size:39
Alignment explanation
Indices: 269064--269453 Score: 455
Period size: 39 Copynumber: 9.7 Consensus size: 39
269054 GTCTACTGGT
* *
269064 CCTACTACGTCGCTGCACACCACTGGTACCCAGACTACG
1 CCTACGACGTCGCTGCACACCACTGGTACTCAGACTACG
269103 CCTACGACGTCGCTG-ACCACCACTGGTACTCAGACTACG
1 CCTACGACGTCGCTGCA-CACCACTGGTACTCAGACTACG
* *
269142 CCTACGACGTCGCTGCACACCACTGGCACCCAGACTACG
1 CCTACGACGTCGCTGCACACCACTGGTACTCAGACTACG
*
269181 CCTACGACGTCGCTGCACACCACTGGCACTCAGACTACG
1 CCTACGACGTCGCTGCACACCACTGGTACTCAGACTACG
*
269220 CCTACTACGTCGCTGCACACCACTGGTACTCAGACTACG
1 CCTACGACGTCGCTGCACACCACTGGTACTCAGACTACG
* *
269259 CCTACCACGTCGCTGCACACCACTGGCACTCAGACTACG
1 CCTACGACGTCGCTGCACACCACTGGTACTCAGACTACG
* *
269298 CCTACGACTTCGCTGCACACCACTGGTCCTACGACTCTGACTACG
1 CCTACGACGTCGCTGCACACCACTGG---T---ACTCAGACTACG
* *
269343 TCTACTGGTCCTAC-TACGCTGCACACCACTGGTACCCAGACTACG
1 CCTAC--G----ACGT-CGCTGCACACCACTGGTACTCAGACTACG
* *
269388 CCTACCACGTCGCTG-ACCACCACTGGCACTCAGACTACG
1 CCTACGACGTCGCTGCA-CACCACTGGTACTCAGACTACG
* * *
269427 CCCACCACGTCTCTG-ACCACCACTGGT
1 CCTACGACGTCGCTGCA-CACCACTGGT
269454 CCTACGACTC
Statistics
Matches: 311, Mismatches: 23, Indels: 34
0.85 0.06 0.09
Matches are distributed among these distances:
38 2 0.01
39 257 0.83
40 2 0.01
45 29 0.09
47 1 0.00
48 1 0.00
50 1 0.00
51 18 0.06
ACGTcount: A:0.22, C:0.41, G:0.18, T:0.18
Consensus pattern (39 bp):
CCTACGACGTCGCTGCACACCACTGGTACTCAGACTACG
Left flanking sequence: Indices 268564 -- 269063
TTCGTGCCATTAAGAACACCTGGGGCCGTTGTGGATGGAGACATAAGCTCGATTGTTATGACAAT
GTCAAAAAGGTGAAACCGAGAGACTGCTATTCTCGCATCAAGTCGAGATGGGGCGGCATGTACAA
GCGTGAAGAAGACGAAGACCTTGACAATGTAAGACGTACTTTTGGACGGTATTCGTACCAAGATT
GTTGGGGTGTGTTCACTCGTTGCTCCCGTGGCCATGGCAAAGTTTTGCAGTATTGCTGGGATTGC
CGTTGCGACCCCCCTCCCCACACCACCAGAACTACCACGACCACTCTGAGAACTCTGACACCACC
TCCCACAACACGGACCACGTCCACGCGCACCACTTCTGATACCACGTCGCTGACTACCACCAGGT
CCACGTCTCAAACTACGCGTACAACGTCGCTGACCACCACTGGTACTCAGACTACGCCCACCACG
TCGCTGACCACCACTGGTCCTACGACTCTGACTACGTCTACTGGT
Right flanking sequence: Indices 269454 -- 269723
CCTACGACTCTGACTACGTCTACTGGTCCTACTACGTCGCTGCACACCACTGGTACCCAGACTAC
GCCTACGACGTCGCTGACCACCACTGGTACTCAGACTACGCCCACCACGTCGCTGCACACCACTG
GTACTCAGACTACGCCTACGACGTCGCTGCATACTACTGGCACTCAGACTACGCCCACCACGTCG
CTGACCACCACTGGTCCTACGACTCTGACTACGTCTACTGGTCCTACTACGTCGCTGCACACCAC
TGGTACCCAG
Found at i:269270 original size:117 final size:117
Alignment explanation
Indices: 269064--269662 Score: 650
Period size: 117 Copynumber: 4.9 Consensus size: 117
269054 GTCTACTGGT
* * * *
269064 CCTACTACGTCGCTGCACACCACTGGTACCCAGACTACGCCTACGACGTCGCTG-ACCACCACTG
1 CCTACCACGTCGCTGCACACCACTGGCACTCAGACTACGCCTACTACGTCGCTGCA-CACCACTG
* *
269128 GTACTCAGACTACGCCTACGACGTCGCTG-CACACCACTGGCACCCAGACTACG
65 GTACTCAGACTACGCCTACCACGTCGCTGAC-CACCACTGGCACTCAGACTACG
*
269181 CCTACGACGTCGCTGCACACCACTGGCACTCAGACTACGCCTACTACGTCGCTGCACACCACTGG
1 CCTACCACGTCGCTGCACACCACTGGCACTCAGACTACGCCTACTACGTCGCTGCACACCACTGG
269246 TACTCAGACTACGCCTACCACGTCGCTG-CACACCACTGGCACTCAGACTACG
66 TACTCAGACTACGCCTACCACGTCGCTGAC-CACCACTGGCACTCAGACTACG
* * * *
269298 CCTACGACTTCGCTGCACACCACTGGTCCTACGACTCTGACTACGTCTACTGGTCCTAC-TACGC
1 CCTACCACGTCGCTGCACACCACTGG-----C-ACTCAGACTACG-C--C---TACTACGT-CGC
*
269362 TGCACACCACTGGTACCCAGACTACGCCTACCACGTCGCTGACCACCACTGGCACTCAGACTACG
53 TGCACACCACTGGTACTCAGACTACGCCTACCACGTCGCTGACCACCACTGGCACTCAGACTACG
* * *
269427 CCCACCACGTCTCTG-ACCACCACTGGTCCTACGACTCTGACTACGTCTACTGGTCCTACTACGT
1 CCTACCACGTCGCTGCA-CACCACTGG-----C-A--CT--C-A-GACTAC--G-CCTACTACGT
* * *
269491 CGCTGCACACCACTGGTACCCAGACTACGCCTACGACGTCGCTGACCACCACTGGTACTCAGACT
50 CGCTGCACACCACTGGTACTCAGACTACGCCTACCACGTCGCTGACCACCACTGGCACTCAGACT
269556 ACG
115 ACG
* * * * *
269559 CCCACCACGTCGCTGCACACCACTGGTACTCAGACTACGCCTACGACGTCGCTGCATACTACTGG
1 CCTACCACGTCGCTGCACACCACTGGCACTCAGACTACGCCTACTACGTCGCTGCACACCACTGG
* *
269624 CACTCAGACTACGCCCACCACGTCGCTGACCACCACTGG
66 TACTCAGACTACGCCTACCACGTCGCTGACCACCACTGG
269663 TCCTACGACT
Statistics
Matches: 427, Mismatches: 29, Indels: 52
0.84 0.06 0.10
Matches are distributed among these distances:
117 192 0.45
118 2 0.00
120 5 0.01
121 1 0.00
122 2 0.00
123 11 0.03
124 3 0.01
126 2 0.00
128 2 0.00
129 98 0.23
130 1 0.00
131 2 0.00
132 94 0.22
133 3 0.01
135 6 0.01
137 3 0.01
ACGTcount: A:0.22, C:0.41, G:0.19, T:0.18
Consensus pattern (117 bp):
CCTACCACGTCGCTGCACACCACTGGCACTCAGACTACGCCTACTACGTCGCTGCACACCACTGG
TACTCAGACTACGCCTACCACGTCGCTGACCACCACTGGCACTCAGACTACG
Left flanking sequence: Indices 268564 -- 269063
TTCGTGCCATTAAGAACACCTGGGGCCGTTGTGGATGGAGACATAAGCTCGATTGTTATGACAAT
GTCAAAAAGGTGAAACCGAGAGACTGCTATTCTCGCATCAAGTCGAGATGGGGCGGCATGTACAA
GCGTGAAGAAGACGAAGACCTTGACAATGTAAGACGTACTTTTGGACGGTATTCGTACCAAGATT
GTTGGGGTGTGTTCACTCGTTGCTCCCGTGGCCATGGCAAAGTTTTGCAGTATTGCTGGGATTGC
CGTTGCGACCCCCCTCCCCACACCACCAGAACTACCACGACCACTCTGAGAACTCTGACACCACC
TCCCACAACACGGACCACGTCCACGCGCACCACTTCTGATACCACGTCGCTGACTACCACCAGGT
CCACGTCTCAAACTACGCGTACAACGTCGCTGACCACCACTGGTACTCAGACTACGCCCACCACG
TCGCTGACCACCACTGGTCCTACGACTCTGACTACGTCTACTGGT
Right flanking sequence: Indices 269663 -- 269723
TCCTACGACTCTGACTACGTCTACTGGTCCTACTACGTCGCTGCACACCACTGGTACCCAG
Found at i:269541 original size:39 final size:39
Alignment explanation
Indices: 269481--269663 Score: 253
Period size: 39 Copynumber: 4.7 Consensus size: 39
269471 GTCTACTGGT
* *
269481 CCTACTACGTCGCTGCACACCACTGGTACCCAGACTACG
1 CCTACCACGTCGCTGCACACCACTGGTACTCAGACTACG
*
269520 CCTACGACGTCGCTG-ACCACCACTGGTACTCAGACTACG
1 CCTACCACGTCGCTGCA-CACCACTGGTACTCAGACTACG
*
269559 CCCACCACGTCGCTGCACACCACTGGTACTCAGACTACG
1 CCTACCACGTCGCTGCACACCACTGGTACTCAGACTACG
* * * *
269598 CCTACGACGTCGCTGCATACTACTGGCACTCAGACTACG
1 CCTACCACGTCGCTGCACACCACTGGTACTCAGACTACG
*
269637 CCCACCACGTCGCTG-ACCACCACTGGT
1 CCTACCACGTCGCTGCA-CACCACTGGT
269664 CCTACGACTC
Statistics
Matches: 127, Mismatches: 14, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
38 2 0.02
39 124 0.98
40 1 0.01
ACGTcount: A:0.22, C:0.41, G:0.19, T:0.17
Consensus pattern (39 bp):
CCTACCACGTCGCTGCACACCACTGGTACTCAGACTACG
Left flanking sequence: Indices 268981 -- 269480
CGCTGACCACCACTGGTACTCAGACTACGCCCACCACGTCGCTGACCACCACTGGTCCTACGACT
CTGACTACGTCTACTGGTCCTACTACGTCGCTGCACACCACTGGTACCCAGACTACGCCTACGAC
GTCGCTGACCACCACTGGTACTCAGACTACGCCTACGACGTCGCTGCACACCACTGGCACCCAGA
CTACGCCTACGACGTCGCTGCACACCACTGGCACTCAGACTACGCCTACTACGTCGCTGCACACC
ACTGGTACTCAGACTACGCCTACCACGTCGCTGCACACCACTGGCACTCAGACTACGCCTACGAC
TTCGCTGCACACCACTGGTCCTACGACTCTGACTACGTCTACTGGTCCTACTACGCTGCACACCA
CTGGTACCCAGACTACGCCTACCACGTCGCTGACCACCACTGGCACTCAGACTACGCCCACCACG
TCTCTGACCACCACTGGTCCTACGACTCTGACTACGTCTACTGGT
Right flanking sequence: Indices 269664 -- 269723
CCTACGACTCTGACTACGTCTACTGGTCCTACTACGTCGCTGCACACCACTGGTACCCAG
Found at i:269603 original size:132 final size:132
Alignment explanation
Indices: 269220--269585 Score: 616
Period size: 129 Copynumber: 2.8 Consensus size: 132
269210 TCAGACTACG
*
269220 CCTACTACGTCGCTGCACACCACTGGTACTCAGACTACGCCTACCACGTCGCTG-CACACCACTG
1 CCTACTACGTCGCTGCACACCACTGGTACCCAGACTACGCCTACCACGTCGCTGAC-CACCACTG
* * *
269284 GCACTCAGACTACGCCTACGACTTCGCTGCACACCACTGGTCCTACGACTCTGACTACGTCTACT
65 GCACTCAGACTACGCCCACCACGTCGCTGCACACCACTGGTCCTACGACTCTGACTACGTCTACT
269349 GGT
130 GGT
269352 CCTACTA---CGCTGCACACCACTGGTACCCAGACTACGCCTACCACGTCGCTGACCACCACTGG
1 CCTACTACGTCGCTGCACACCACTGGTACCCAGACTACGCCTACCACGTCGCTGACCACCACTGG
*
269414 CACTCAGACTACGCCCACCACGTCTCTG-ACCACCACTGGTCCTACGACTCTGACTACGTCTACT
66 CACTCAGACTACGCCCACCACGTCGCTGCA-CACCACTGGTCCTACGACTCTGACTACGTCTACT
269478 GGT
130 GGT
*
269481 CCTACTACGTCGCTGCACACCACTGGTACCCAGACTACGCCTACGACGTCGCTGACCACCACTGG
1 CCTACTACGTCGCTGCACACCACTGGTACCCAGACTACGCCTACCACGTCGCTGACCACCACTGG
*
269546 TACTCAGACTACGCCCACCACGTCGCTGCACACCACTGGT
66 CACTCAGACTACGCCCACCACGTCGCTGCACACCACTGGT
269586 ACTCAGACTA
Statistics
Matches: 220, Mismatches: 8, Indels: 12
0.92 0.03 0.05
Matches are distributed among these distances:
128 1 0.00
129 120 0.55
130 1 0.00
132 97 0.44
133 1 0.00
ACGTcount: A:0.22, C:0.41, G:0.18, T:0.19
Consensus pattern (132 bp):
CCTACTACGTCGCTGCACACCACTGGTACCCAGACTACGCCTACCACGTCGCTGACCACCACTGG
CACTCAGACTACGCCCACCACGTCGCTGCACACCACTGGTCCTACGACTCTGACTACGTCTACTG
GT
Left flanking sequence: Indices 268720 -- 269219
ATGTAAGACGTACTTTTGGACGGTATTCGTACCAAGATTGTTGGGGTGTGTTCACTCGTTGCTCC
CGTGGCCATGGCAAAGTTTTGCAGTATTGCTGGGATTGCCGTTGCGACCCCCCTCCCCACACCAC
CAGAACTACCACGACCACTCTGAGAACTCTGACACCACCTCCCACAACACGGACCACGTCCACGC
GCACCACTTCTGATACCACGTCGCTGACTACCACCAGGTCCACGTCTCAAACTACGCGTACAACG
TCGCTGACCACCACTGGTACTCAGACTACGCCCACCACGTCGCTGACCACCACTGGTCCTACGAC
TCTGACTACGTCTACTGGTCCTACTACGTCGCTGCACACCACTGGTACCCAGACTACGCCTACGA
CGTCGCTGACCACCACTGGTACTCAGACTACGCCTACGACGTCGCTGCACACCACTGGCACCCAG
ACTACGCCTACGACGTCGCTGCACACCACTGGCACTCAGACTACG
Right flanking sequence: Indices 269586 -- 269723
ACTCAGACTACGCCTACGACGTCGCTGCATACTACTGGCACTCAGACTACGCCCACCACGTCGCT
GACCACCACTGGTCCTACGACTCTGACTACGTCTACTGGTCCTACTACGTCGCTGCACACCACTG
GTACCCAG
Found at i:269619 original size:132 final size:130
Alignment explanation
Indices: 269222--269662 Score: 565
Period size: 129 Copynumber: 3.5 Consensus size: 130
269212 AGACTACGCC
*
269222 TACTACGTCGCTGCACACCACTGGTACTCAGACTACGCCTACCACGTCGCTG-CACACCACTGGC
1 TACTACGTCGCTGCACACCACTGGTACCCAGACTACGCCTACCACGTCGCTGAC-CACCACTGGC
* * *
269286 ACTCAGACTACGCCTACGACTTCGCTGCACACCACTGGTCCTACGACTCTGACTACGTCTACTG-
65 ACTCAGACTACGCCCACCACGTCGCTGCACACCACTGGTCCTACGACTCTGACTACGTCTACTGC
*
269350 G
130 A
*
269351 TCCTAC-TACGCTGCACACCACTGGTACCCAGACTACGCCTACCACGTCGCTGACCACCACTGGC
1 TACTACGT-CGCTGCACACCACTGGTACCCAGACTACGCCTACCACGTCGCTGACCACCACTGGC
*
269415 ACTCAGACTACGCCCACCACGTCTCTG-ACCACCACTGGTCCTACGACTCTGACTACGTCTACTG
65 ACTCAGACTACGCCCACCACGTCGCTGCA-CACCACTGGTCCTACGACTCTGACTACGTCTACT-
*
269479 GTCC
128 G-CA
* *
269483 TACTACGTCGCTGCACACCACTGGTACCCAGACTACGCCTACGACGTCGCTGACCACCACTGGTA
1 TACTACGTCGCTGCACACCACTGGTACCCAGACTACGCCTACCACGTCGCTGACCACCACTGGCA
*
269548 CTCAGACTACGCCCACCACGTCGCTGCACACCACTGG---T---ACTCAGACTACG----C--C-
66 CTCAGACTACGCCCACCACGTCGCTGCACACCACTGGTCCTACGACTCTGACTACGTCTACTGCA
* * * * * *
269600 TACGACGTCGCTGCATACTACTGGCACTCAGACTACGCCCACCACGTCGCTGACCACCACTGG
1 TACTACGTCGCTGCACACCACTGGTACCCAGACTACGCCTACCACGTCGCTGACCACCACTGG
269663 TCCTACGACT
Statistics
Matches: 285, Mismatches: 19, Indels: 28
0.86 0.06 0.08
Matches are distributed among these distances:
117 56 0.20
118 1 0.00
122 1 0.00
126 11 0.04
128 2 0.01
129 116 0.41
130 2 0.01
132 94 0.33
133 2 0.01
ACGTcount: A:0.22, C:0.41, G:0.18, T:0.19
Consensus pattern (130 bp):
TACTACGTCGCTGCACACCACTGGTACCCAGACTACGCCTACCACGTCGCTGACCACCACTGGCA
CTCAGACTACGCCCACCACGTCGCTGCACACCACTGGTCCTACGACTCTGACTACGTCTACTGCA
Left flanking sequence: Indices 268722 -- 269221
GTAAGACGTACTTTTGGACGGTATTCGTACCAAGATTGTTGGGGTGTGTTCACTCGTTGCTCCCG
TGGCCATGGCAAAGTTTTGCAGTATTGCTGGGATTGCCGTTGCGACCCCCCTCCCCACACCACCA
GAACTACCACGACCACTCTGAGAACTCTGACACCACCTCCCACAACACGGACCACGTCCACGCGC
ACCACTTCTGATACCACGTCGCTGACTACCACCAGGTCCACGTCTCAAACTACGCGTACAACGTC
GCTGACCACCACTGGTACTCAGACTACGCCCACCACGTCGCTGACCACCACTGGTCCTACGACTC
TGACTACGTCTACTGGTCCTACTACGTCGCTGCACACCACTGGTACCCAGACTACGCCTACGACG
TCGCTGACCACCACTGGTACTCAGACTACGCCTACGACGTCGCTGCACACCACTGGCACCCAGAC
TACGCCTACGACGTCGCTGCACACCACTGGCACTCAGACTACGCC
Right flanking sequence: Indices 269663 -- 269723
TCCTACGACTCTGACTACGTCTACTGGTCCTACTACGTCGCTGCACACCACTGGTACCCAG
Found at i:269623 original size:78 final size:78
Alignment explanation
Indices: 269487--269663 Score: 286
Period size: 78 Copynumber: 2.3 Consensus size: 78
269477 TGGTCCTACT
*
269487 ACGTCGCTGCACACCACTGGTACCCAGACTACGCCTACGACGTCGCTGACCACCACTGGTACTCA
1 ACGTCGCTGCACACCACTGGTACCCAGACTACGCCTACGACGTCGCTGACCACCACTGGCACTCA
269552 GACTACGCCCACC
66 GACTACGCCCACC
* * *
269565 ACGTCGCTGCACACCACTGGTACTCAGACTACGCCTACGACGTCGCTG-CATACTACTGGCACTC
1 ACGTCGCTGCACACCACTGGTACCCAGACTACGCCTACGACGTCGCTGAC-CACCACTGGCACTC
269629 AGACTACGCCCACC
65 AGACTACGCCCACC
269643 ACGTCGCTG-ACCACCACTGGT
1 ACGTCGCTGCA-CACCACTGGT
269664 CCTACGACTC
Statistics
Matches: 93, Mismatches: 4, Indels: 4
0.92 0.04 0.04
Matches are distributed among these distances:
77 2 0.02
78 91 0.98
ACGTcount: A:0.23, C:0.41, G:0.20, T:0.17
Consensus pattern (78 bp):
ACGTCGCTGCACACCACTGGTACCCAGACTACGCCTACGACGTCGCTGACCACCACTGGCACTCA
GACTACGCCCACC
Left flanking sequence: Indices 268987 -- 269486
CCACCACTGGTACTCAGACTACGCCCACCACGTCGCTGACCACCACTGGTCCTACGACTCTGACT
ACGTCTACTGGTCCTACTACGTCGCTGCACACCACTGGTACCCAGACTACGCCTACGACGTCGCT
GACCACCACTGGTACTCAGACTACGCCTACGACGTCGCTGCACACCACTGGCACCCAGACTACGC
CTACGACGTCGCTGCACACCACTGGCACTCAGACTACGCCTACTACGTCGCTGCACACCACTGGT
ACTCAGACTACGCCTACCACGTCGCTGCACACCACTGGCACTCAGACTACGCCTACGACTTCGCT
GCACACCACTGGTCCTACGACTCTGACTACGTCTACTGGTCCTACTACGCTGCACACCACTGGTA
CCCAGACTACGCCTACCACGTCGCTGACCACCACTGGCACTCAGACTACGCCCACCACGTCTCTG
ACCACCACTGGTCCTACGACTCTGACTACGTCTACTGGTCCTACT
Right flanking sequence: Indices 269664 -- 269723
CCTACGACTCTGACTACGTCTACTGGTCCTACTACGTCGCTGCACACCACTGGTACCCAG
Done.