Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: scaffold32
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 286998
ACGTcount: A:0.23, C:0.28, G:0.27, T:0.23
Warning! 1 characters in sequence are not A, C, G, or T
File 1 of 2
Found at i:3575 original size:12 final size:12
Alignment explanation
Indices: 3558--3601 Score: 70
Period size: 12 Copynumber: 3.7 Consensus size: 12
3548 ATAACCACCA
*
3558 CCACCACGACAC
1 CCACCACCACAC
3570 CCACCACCACAC
1 CCACCACCACAC
*
3582 CCACCACCACAT
1 CCACCACCACAC
3594 CCACCACC
1 CCACCACC
3602 GCATCTACAC
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 30 1.00
ACGTcount: A:0.32, C:0.64, G:0.02, T:0.02
Consensus pattern (12 bp):
CCACCACCACAC
Left flanking sequence: Indices 3058 -- 3557
CATTTGAAGAGGTATCCAGACACCTTAACAAAGAGTTTGAGAGTTTGGGTGTAGTTTAAAACAAG
GGATTGTTATCCAGTTACTTCAATTCGATTGTTTACGCTACAGTTAAACCGTCAGTACATTGATG
GTATGACAGCTCGCGTTGGGAACGCCTTTGAAACCAGCAGCAGAGAAAGCTCAAGATAGCACCGG
AGAAGCTAATCGCCATACCTCAGTCCCCAATCCCAACTCTTAACTCATCCTGACTGGCTTTGGTT
GTATCCTCCTACAAGCTACACAAACTATATGCAGTACACCAATATCACACCAACATGGTCCCAAC
GTATTGGATAACCACGGCCAGAACTCACCAAAACACAACATTGACATAACCAATGCACCCGATTA
CAACCACTACCAACCTTGGTTCCCCCCAAATCCCCCAATTTAATTCAAAACTCAAGCACCAGCAA
GTGCCACTACTCTACCATCAAAGCAAGCTCTGAAGATAACCACCA
Right flanking sequence: Indices 3602 -- 4101
GCATCTACACCATCACAACTCACCCCCCCTGTTTTAATCCCCACACAACCAATCCCTTCCCCCGA
CTCTTCTCCTGCCACATCAAAGCCGCACGAAAAACAAACCACCAACCCTTCCCATGCCGTCGATC
GACACCCCCAAGCTCTACCGGGCCAGCAAGGCCAAGCATGGGCACCAGCTGCTGCAGCCGTTTAA
GGTGGCCCACCAGCGGGTCAGTGTCGACGTCGACTTGGCCAACCACGCGGTGCTGGGGCTGGCAG
AGGTGGTGATTGTCCCGTTCTCCGATAAGCTCAAGGTGGTCAAGTTGGACTGTCGGGAGATGGAC
ATCGAGCGGGTGACGGTGAATGGCGACACCTCGTGCAACTACATCTACGACGATGACCTATATCT
CAACGACGACGAGTACTTTGAGAACACCACGGCCCGGGGCCTTTTGAACCTCCTCGACGTCACCT
CGCCCGATGTGAGCATCCACCACCACCACTTGATCCGCCAAAAGC
Found at i:3606 original size:12 final size:12
Alignment explanation
Indices: 3558--3606 Score: 62
Period size: 12 Copynumber: 4.1 Consensus size: 12
3548 ATAACCACCA
* *
3558 CCACCACGACAC
1 CCACCACCACAT
*
3570 CCACCACCACAC
1 CCACCACCACAT
3582 CCACCACCACAT
1 CCACCACCACAT
*
3594 CCACCACCGCAT
1 CCACCACCACAT
3606 C
1 C
3607 TACACCATCA
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
12 34 1.00
ACGTcount: A:0.31, C:0.61, G:0.04, T:0.04
Consensus pattern (12 bp):
CCACCACCACAT
Left flanking sequence: Indices 3058 -- 3557
CATTTGAAGAGGTATCCAGACACCTTAACAAAGAGTTTGAGAGTTTGGGTGTAGTTTAAAACAAG
GGATTGTTATCCAGTTACTTCAATTCGATTGTTTACGCTACAGTTAAACCGTCAGTACATTGATG
GTATGACAGCTCGCGTTGGGAACGCCTTTGAAACCAGCAGCAGAGAAAGCTCAAGATAGCACCGG
AGAAGCTAATCGCCATACCTCAGTCCCCAATCCCAACTCTTAACTCATCCTGACTGGCTTTGGTT
GTATCCTCCTACAAGCTACACAAACTATATGCAGTACACCAATATCACACCAACATGGTCCCAAC
GTATTGGATAACCACGGCCAGAACTCACCAAAACACAACATTGACATAACCAATGCACCCGATTA
CAACCACTACCAACCTTGGTTCCCCCCAAATCCCCCAATTTAATTCAAAACTCAAGCACCAGCAA
GTGCCACTACTCTACCATCAAAGCAAGCTCTGAAGATAACCACCA
Right flanking sequence: Indices 3607 -- 4106
TACACCATCACAACTCACCCCCCCTGTTTTAATCCCCACACAACCAATCCCTTCCCCCGACTCTT
CTCCTGCCACATCAAAGCCGCACGAAAAACAAACCACCAACCCTTCCCATGCCGTCGATCGACAC
CCCCAAGCTCTACCGGGCCAGCAAGGCCAAGCATGGGCACCAGCTGCTGCAGCCGTTTAAGGTGG
CCCACCAGCGGGTCAGTGTCGACGTCGACTTGGCCAACCACGCGGTGCTGGGGCTGGCAGAGGTG
GTGATTGTCCCGTTCTCCGATAAGCTCAAGGTGGTCAAGTTGGACTGTCGGGAGATGGACATCGA
GCGGGTGACGGTGAATGGCGACACCTCGTGCAACTACATCTACGACGATGACCTATATCTCAACG
ACGACGAGTACTTTGAGAACACCACGGCCCGGGGCCTTTTGAACCTCCTCGACGTCACCTCGCCC
GATGTGAGCATCCACCACCACCACTTGATCCGCCAAAAGCTCAAC
Found at i:4205 original size:12 final size:12
Alignment explanation
Indices: 4188--4213 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
4178 GGGCCCCTCG
4188 ACCCCGCTGGCC
1 ACCCCGCTGGCC
4200 ACCCCGCTGGCC
1 ACCCCGCTGGCC
4212 AC
1 AC
4214 GCTACATCAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.12, C:0.58, G:0.23, T:0.08
Consensus pattern (12 bp):
ACCCCGCTGGCC
Left flanking sequence: Indices 3688 -- 4187
GCCGCACGAAAAACAAACCACCAACCCTTCCCATGCCGTCGATCGACACCCCCAAGCTCTACCGG
GCCAGCAAGGCCAAGCATGGGCACCAGCTGCTGCAGCCGTTTAAGGTGGCCCACCAGCGGGTCAG
TGTCGACGTCGACTTGGCCAACCACGCGGTGCTGGGGCTGGCAGAGGTGGTGATTGTCCCGTTCT
CCGATAAGCTCAAGGTGGTCAAGTTGGACTGTCGGGAGATGGACATCGAGCGGGTGACGGTGAAT
GGCGACACCTCGTGCAACTACATCTACGACGATGACCTATATCTCAACGACGACGAGTACTTTGA
GAACACCACGGCCCGGGGCCTTTTGAACCTCCTCGACGTCACCTCGCCCGATGTGAGCATCCACC
ACCACCACTTGATCCGCCAAAAGCTCAACAAAGTGTTCGGCGAGCTCAATTTCGACCCTCGCGAG
CTAGCACACCAGCAACACCAAATCACCGCCCGCGAGGGCCCCTCG
Right flanking sequence: Indices 4214 -- 4713
GCTACATCAGCAACAGGTACAGCAGCAGCTTCAGCAGCAGCAACAGTTGTTTCTACAGCAGTTCA
CCACCGCACACGCCAACACCGGCGAGCTCGCGATCTTCCTTCCGGAGAACTTCCGGTTCTCCGCG
GGCGACGGCACCCCCCAGCTGGTGGCGATGACCACTCCAGCCAAGAAGAACACTCCGCACGCCGA
GAGCTACGCTCCCATCACGTTTACTATCACATACAGCCTCAAGAACCCCAAAAACGGGATCCAGT
TCGTCACCCCCGAAAACAAGGAAAAGTGGCACTGTTTCACGCTGAACGCGGACTACGGGGTGCTG
ACAAGCTCATGGGTGCCGTGTGTGGACAATCTCTGGGAGCGGTGCACGTGGCTGGTGGAAATGAG
CATCCCCCGTACGCTCCAGCCTCGGATCGAGGACGAAGACGAGGAAGAGGAGGAGGAACTGGGCG
AACTCGACCTCGTGGTGTGCTGTGGCGACACCAACAACGTCAAGG
Found at i:11059 original size:144 final size:144
Alignment explanation
Indices: 10776--12280 Score: 747
Period size: 144 Copynumber: 10.5 Consensus size: 144
10766 ATCATCGTTG
* * * * * * * *
10776 GTTGTAGCCCAGGTAGATGTAAACTCAGTACACTCCTCACAAGTGGGACGAGGGAATAGGGAGGT
1 GTTGTAGCCCAAGTGGAAGTGAACTCAGTACACTCTTCACAAGTGGGGCGAGGGAATAAGGAAGT
* * * * * * ** * * ***
10841 TGTCGTGGTCAAGACACCCTCATCGTCCGTGGTGATC-ACGATGATCCCAGAGTCAGTTGCGGTA
66 TGTCGTAGTCAAGACACCGTCTTCGTCAGTTGTTA-CAATAATTATACCAGAGTCAGTTGCAACA
* * * *
10905 GTGCCGTCCTCATCA
130 CTACCATCCTCGTCA
* * * * * *
10920 GTTGTAGCCCAAGTAGATGTAAACTCAGTACACTCCTCACAAGTGGGGCGAGGGAATAGGGAGGT
1 GTTGTAGCCCAAGTGGAAGTGAACTCAGTACACTCTTCACAAGTGGGGCGAGGGAATAAGGAAGT
* * * * * * *
10985 TGTCGTGGTCAAGACACCCTCTTCGTCTGTCGTCACAATGATTATACCGGAGTCAGTTGCAACAC
66 TGTCGTAGTCAAGACACCGTCTTCGTCAGTTGTTACAATAATTATACCAGAGTCAGTTGCAACAC
11050 TACCATCCTCGTCA
131 TACCATCCTCGTCA
* * * * * * ** *** *
11064 GTCGTAACCC-AGTTGGATGTGAACTCAGTGCATTCCTCACAA-TTAGGCCTTGGAATTAACGAA
1 GTTGTAGCCCAAG-TGGAAGTGAACTCAGTACACTCTTCACAAGTGGGGCGAGGGAA-TAAGGAA
* * * * * * * * * * ** * *
11127 GTTGTTGTTGTTAGTGA-TCCTTCTTCGTCTGTGGTCACAATAATTATTCCACTGTCAGTAGCTA
64 GTTGTCGTAGTCA-AGACACCGTCTTCGTCAGTTGTTACAATAATTATACCAGAGTCAGTTGCAA
**** * *
11191 TTGAACCGTCCTCATCA
128 CACTACCATCCTCGTCA
* * * * * * *
11208 GTTGT-GTCCCAAGTGGAAGTGAATTCAGTACACTCATCACAATTGGGCCGTGGAAATAATGAAG
1 GTTGTAG-CCCAAGTGGAAGTGAACTCAGTACACTCTTCACAAGTGGGGCGAGGGAATAAGGAAG
* * * * * *
11272 TGGACGTAGTCAATACACCGTCTTCATCAGTTGTTACAATTATTATACCGGAGTCAGTTGCAACA
65 TTGTCGTAGTCAAGACACCGTCTTCGTCAGTTGTTACAATAATTATACCAGAGTCAGTTGCAACA
* ** *
11337 CCATAATCATCGTCA
130 CTACCATCCTCGTCA
* * * * * * * * * * * *
11352 GTGGTCGTCCACGTTGAAGTGAACTCGGTACATTCTTCGCAGGTGGGTCGAGGGAACAATGAAGT
1 GTTGTAGCCCAAGTGGAAGTGAACTCAGTACACTCTTCACAAGTGGGGCGAGGGAATAAGGAAGT
* * * * * * * * * * * *
11417 TGTCGTTGTTAGTGA-GCCTTCCTCGTCAGTTGTCACAACAATTACT-CCGGAGTCCGTAGCAGC
66 TGTCGTAGTCA-AGACACCGTCTTCGTCAGTTGTTACAATAATTA-TACCAGAGTCAGTTGCAAC
* * *
11480 AGCT-CCGTCATCATCA
129 A-CTACCATCCTCGTCA
* * * * * * * * * * * *
11496 GATGTGGCCCACGTAGAGGTGAATTCTGTACACTCTTCACAGGTGGGCCGTGGAAATAATGAAGT
1 GTTGTAGCCCAAGTGGAAGTGAACTCAGTACACTCTTCACAAGTGGGGCGAGGGAATAAGGAAGT
* * * * * ** * *
11561 GGACGTAGTCAATACACCGTCTTCGTCAGTTGTTACAATGATGACCCCAGAGTCTGTCT-CGACA
66 TGTCGTAGTCAAGACACCGTCTTCGTCAGTTGTTACAATAATTATACCAGAGTCAGT-TGCAACA
*
11625 CTGCCAT-C-C-TCA
130 CTACCATCCTCGTCA
* * * * *
11637 GTTGTGGCCCAGGTGGAAGTAAACTCAGTACACTCTTCACAAGTGGGGCGAGGGAATACGGAGGT
1 GTTGTAGCCCAAGTGGAAGTGAACTCAGTACACTCTTCACAAGTGGGGCGAGGGAATAAGGAAGT
* * * * * * * * * * * ****
11702 TGTTGTAGTCAAGACACCATCATCATCCGTTGTTACAACAATCACACCAGAATCTGTCGCCGTGC
66 TGTCGTAGTCAAGACACCGTCTTCGTCAGTTGTTACAATAATTATACCAGAGTCAGTTGCAACAC
* *
11767 TACCATCTTCGTCG
131 TACCATCCTCGTCA
* * * * * * *
11781 GTGGTAGTCCAAGTTGAAGTGAACTCGGTACACTCTTCACAAGTGGGTCGAGGAAATAATGAAGT
1 GTTGTAGCCCAAGTGGAAGTGAACTCAGTACACTCTTCACAAGTGGGGCGAGGGAATAAGGAAGT
* * * * ** * *
11846 GGACGTAGTCAAGACACCGTCTTCGTCAGTTGTTACAATGATGACCCCAGAGTCTGTCT-CGACA
66 TGTCGTAGTCAAGACACCGTCTTCGTCAGTTGTTACAATAATTATACCAGAGTCAGT-TGCAACA
*
11910 CTGCCAT-C-C-TCA
130 CTACCATCCTCGTCA
* * * * *
11922 GTTGTGGCCCAGGTGGAAGTAAACTCAGTACACTCTTCACAAGTGGGGCGAGGGAATACGGAGGT
1 GTTGTAGCCCAAGTGGAAGTGAACTCAGTACACTCTTCACAAGTGGGGCGAGGGAATAAGGAAGT
* * * * * * * * * * * ****
11987 TGTTGTAGTCAAGACACCATCATCATCCGTTGTTACAACAATCACACCAGAATCTGTCGCCGTGC
66 TGTCGTAGTCAAGACACCGTCTTCGTCAGTTGTTACAATAATTATACCAGAGTCAGTTGCAACAC
* *
12052 TACCATCGTCGTCG
131 TACCATCCTCGTCA
* * * * * * *
12066 GTGGTAGTCCAAGTTGAAGTGAACTCAGTACATTCTTCACAAGTGGGACGAGGGAATAGGGACGT
1 GTTGTAGCCCAAGTGGAAGTGAACTCAGTACACTCTTCACAAGTGGGGCGAGGGAATAAGGAAGT
* * * * * * * ** * * * ****
12131 TGTTGTCGTCAAGACACCATCATCATCCGTCGTTACAATAATTGCACCAGAATCTGTCGCCGTGC
66 TGTCGTAGTCAAGACACCGTCTTCGTCAGTTGTTACAATAATTATACCAGAGTCAGTTGCAACAC
* *
12196 TACCATCGTCGTCG
131 TACCATCCTCGTCA
* * * * * * * *
12210 GTGGTAGTCCAAGTTGAAGTGAACTCGGTACACTCTTCACAAGTGGGCCGAGGAAACAACGAAGT
1 GTTGTAGCCCAAGTGGAAGTGAACTCAGTACACTCTTCACAAGTGGGGCGAGGGAATAAGGAAGT
12275 TGTCGT
66 TGTCGT
12281 TGTTAGTGAA
Statistics
Matches: 1048, Mismatches: 288, Indels: 50
0.76 0.21 0.04
Matches are distributed among these distances:
141 212 0.20
142 2 0.00
143 17 0.02
144 802 0.77
145 15 0.01
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (144 bp):
GTTGTAGCCCAAGTGGAAGTGAACTCAGTACACTCTTCACAAGTGGGGCGAGGGAATAAGGAAGT
TGTCGTAGTCAAGACACCGTCTTCGTCAGTTGTTACAATAATTATACCAGAGTCAGTTGCAACAC
TACCATCCTCGTCA
Left flanking sequence: Indices 10276 -- 10775
AGACACCTTCATCATCAGTCGTGACTATGACAACACCCGAATCGGTCACAATAACTCCGTCCTCG
TCAGTTGTAACCCATTCTGAAGTGAACTCAGAGCATTCTTCGCATGTAGCTTGGGGGAATAAAGA
AGTGAAAGTGGTCAATGGGCCATCCAGGTCCGTAGTGACAATGATCACTCCAGAATCCGTGATGA
TAGAACCATACTCGTCGGTAGTAACCCACTCAGAAGTGAACTCGGTACAGTCGTCACATGTTGGC
CTTGGGAATGTCGAGGTCGTTGTGATCAAAATACCTTCTGCATTAGTTGTCACAATCACAACACC
AGAGTCTGTGACGGTCGACCCATCCGTCTTGGTTGTTACCCATTCTGTGGTGAACTCATCACAGT
CTTCGCACGTTGGGCGTGGGAAGAGAGAGGTGCTCGTCGTGAGAGCTCCTTCATTGTCGGTTGTG
ATTATGATCAAGCCCGAATCAGTAGCCGCTTCACCATCATCGTTG
Right flanking sequence: Indices 12281 -- 12780
TGTTAGTGAACCTTCCTCGTCAGTTGTCACAACAATCACCCCAGAGTCCGTAGCAGCAGTTCCGT
CATCATCAGATGTGGCCCACGTAGAGGTGAAGGTCGTACACTCCTCGCATGGCAATTCTGTGGGA
GCAGCTACGGCCGATGTACACTGGCCACAATTGTCAGCAGTAGCAGCTTCGGCCGGGGGTGGGCC
ATCATATATAATCGCGTTGTTATAGCGATCACCTTCACTCCGTTCGTCACGACTGGAAATCGAGA
AAAGAGACAAATCATATCCGAGCCCAATGTCCACAGATATTGGCTCTAGATCTGGTTTATATTGG
AACCACATGGTTAAAATGGACCCCGAATATTCAAATTCCTCGATGGTAGTGTGGATGGCAAGTGC
CATGCCTTCACCAAACCCACGGACTATCACTCCAGCCCAGTCTCCCATTGTGAAGAATATATCAC
CGGTTGAACTCGGGGAGAACTGAACGGTATGAGCGAAGTAATTCG
Found at i:11865 original size:285 final size:285
Alignment explanation
Indices: 11514--12123 Score: 1121
Period size: 285 Copynumber: 2.1 Consensus size: 285
11504 CCACGTAGAG
* * * * * *
11514 GTGAATTCTGTACACTCTTCACAGGTGGGCCGTGGAAATAATGAAGTGGACGTAGTCAATACACC
1 GTGAACTCAGTACACTCTTCACAAGTGGGACGAGGAAATAATGAAGTGGACGTAGTCAAGACACC
11579 GTCTTCGTCAGTTGTTACAATGATGACCCCAGAGTCTGTCTCGACACTGCCATCCTCAGTTGTGG
66 GTCTTCGTCAGTTGTTACAATGATGACCCCAGAGTCTGTCTCGACACTGCCATCCTCAGTTGTGG
11644 CCCAGGTGGAAGTAAACTCAGTACACTCTTCACAAGTGGGGCGAGGGAATACGGAGGTTGTTGTA
131 CCCAGGTGGAAGTAAACTCAGTACACTCTTCACAAGTGGGGCGAGGGAATACGGAGGTTGTTGTA
11709 GTCAAGACACCATCATCATCCGTTGTTACAACAATCACACCAGAATCTGTCGCCGTGCTACCATC
196 GTCAAGACACCATCATCATCCGTTGTTACAACAATCACACCAGAATCTGTCGCCGTGCTACCATC
*
11774 TTCGTCGGTGGTAGTCCAAGTTGAA
261 GTCGTCGGTGGTAGTCCAAGTTGAA
* *
11799 GTGAACTCGGTACACTCTTCACAAGTGGGTCGAGGAAATAATGAAGTGGACGTAGTCAAGACACC
1 GTGAACTCAGTACACTCTTCACAAGTGGGACGAGGAAATAATGAAGTGGACGTAGTCAAGACACC
11864 GTCTTCGTCAGTTGTTACAATGATGACCCCAGAGTCTGTCTCGACACTGCCATCCTCAGTTGTGG
66 GTCTTCGTCAGTTGTTACAATGATGACCCCAGAGTCTGTCTCGACACTGCCATCCTCAGTTGTGG
11929 CCCAGGTGGAAGTAAACTCAGTACACTCTTCACAAGTGGGGCGAGGGAATACGGAGGTTGTTGTA
131 CCCAGGTGGAAGTAAACTCAGTACACTCTTCACAAGTGGGGCGAGGGAATACGGAGGTTGTTGTA
11994 GTCAAGACACCATCATCATCCGTTGTTACAACAATCACACCAGAATCTGTCGCCGTGCTACCATC
196 GTCAAGACACCATCATCATCCGTTGTTACAACAATCACACCAGAATCTGTCGCCGTGCTACCATC
12059 GTCGTCGGTGGTAGTCCAAGTTGAA
261 GTCGTCGGTGGTAGTCCAAGTTGAA
* *
12084 GTGAACTCAGTACATTCTTCACAAGTGGGACGAGGGAATA
1 GTGAACTCAGTACACTCTTCACAAGTGGGACGAGGAAATA
12124 GGGACGTTGT
Statistics
Matches: 314, Mismatches: 11, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
285 314 1.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.25
Consensus pattern (285 bp):
GTGAACTCAGTACACTCTTCACAAGTGGGACGAGGAAATAATGAAGTGGACGTAGTCAAGACACC
GTCTTCGTCAGTTGTTACAATGATGACCCCAGAGTCTGTCTCGACACTGCCATCCTCAGTTGTGG
CCCAGGTGGAAGTAAACTCAGTACACTCTTCACAAGTGGGGCGAGGGAATACGGAGGTTGTTGTA
GTCAAGACACCATCATCATCCGTTGTTACAACAATCACACCAGAATCTGTCGCCGTGCTACCATC
GTCGTCGGTGGTAGTCCAAGTTGAA
Left flanking sequence: Indices 11014 -- 11513
TCGTCACAATGATTATACCGGAGTCAGTTGCAACACTACCATCCTCGTCAGTCGTAACCCAGTTG
GATGTGAACTCAGTGCATTCCTCACAATTAGGCCTTGGAATTAACGAAGTTGTTGTTGTTAGTGA
TCCTTCTTCGTCTGTGGTCACAATAATTATTCCACTGTCAGTAGCTATTGAACCGTCCTCATCAG
TTGTGTCCCAAGTGGAAGTGAATTCAGTACACTCATCACAATTGGGCCGTGGAAATAATGAAGTG
GACGTAGTCAATACACCGTCTTCATCAGTTGTTACAATTATTATACCGGAGTCAGTTGCAACACC
ATAATCATCGTCAGTGGTCGTCCACGTTGAAGTGAACTCGGTACATTCTTCGCAGGTGGGTCGAG
GGAACAATGAAGTTGTCGTTGTTAGTGAGCCTTCCTCGTCAGTTGTCACAACAATTACTCCGGAG
TCCGTAGCAGCAGCTCCGTCATCATCAGATGTGGCCCACGTAGAG
Right flanking sequence: Indices 12124 -- 12623
GGGACGTTGTTGTCGTCAAGACACCATCATCATCCGTCGTTACAATAATTGCACCAGAATCTGTC
GCCGTGCTACCATCGTCGTCGGTGGTAGTCCAAGTTGAAGTGAACTCGGTACACTCTTCACAAGT
GGGCCGAGGAAACAACGAAGTTGTCGTTGTTAGTGAACCTTCCTCGTCAGTTGTCACAACAATCA
CCCCAGAGTCCGTAGCAGCAGTTCCGTCATCATCAGATGTGGCCCACGTAGAGGTGAAGGTCGTA
CACTCCTCGCATGGCAATTCTGTGGGAGCAGCTACGGCCGATGTACACTGGCCACAATTGTCAGC
AGTAGCAGCTTCGGCCGGGGGTGGGCCATCATATATAATCGCGTTGTTATAGCGATCACCTTCAC
TCCGTTCGTCACGACTGGAAATCGAGAAAAGAGACAAATCATATCCGAGCCCAATGTCCACAGAT
ATTGGCTCTAGATCTGGTTTATATTGGAACCACATGGTTAAAATG
Found at i:12303 original size:429 final size:428
Alignment explanation
Indices: 11346--12370 Score: 1223
Period size: 429 Copynumber: 2.4 Consensus size: 428
11336 ACCATAATCA
* * * * * * *
11346 TCGTCAGTGGTCGTCCACGTTGAAGTGAACTCGGTACATTCTTCGCAGGTGGGTCGAGGGAACAA
1 TCGTCGGTGGTAGTCCAAGTTGAAGTGAACTCGGTACACTCTTCACAAGTGGGTCGAGGAAACAA
* * * *
11411 TGAAGTTGTCGTTGTTAGTGAGCCTTCCTCGTCAGTTGTCACAACAATTACTCCGGAGTCCGTAG
66 TGAAGTTGTCGTTGTTAGTGAACCTTCCTCGTCAGTTGTCACAACAATCACCCCAGAGTCCGTAG
* * * * * *
11476 CAGCAGCTCCGTCATCATCAGATGTGGCCCACGTAGAGGTGAATTCTGTACACTCTTCACAGGTG
131 CAGCAGCT-CGCCATCATCAGATGTGGCCCACGTAGAAGTAAACTCAGTACACTCTTCACAAGTG
* * * * * * ** *
11541 GGCCGTGGAAATAATGAAGTGGACGTAGTCAATACACCGTCTTCGTCAGTTGTTACAATGATGAC
195 GGCCGAGGAAATAAGGAAGTGGACGTAGTCAAGACACCATCATCATCAGTTGTTACAACAATCAC
* * * * * * *
11606 CCCAGAGTCTGTCTCGACACTGCCATCCTCAGTTGTGGCCCAGGTGGAAGTAAACTCAGTACACT
260 ACCAGAATCTGTCCCGACACTACCATCCTCAGTGGTAGCCCAAGTGGAAGTAAACTCAGTACACT
* * *
11671 CTTCACAAGTGGGGCGAGGGAATACGGAGGTTGTTGTAGTCAAGACACCATCATCATCCGTTGTT
325 CTTCACAAGTGGGACGAGGGAATACGGACGTTGTTGTAGTCAAGACACCATCATCATCCGTCGTT
*
11736 ACAACAATCACACCAGAATCTGTCGCCGTGCTACCATCT
390 ACAACAATCACACCAGAATCTGTCGCCGTGCTACCATCG
*
11775 TCGTCGGTGGTAGTCCAAGTTGAAGTGAACTCGGTACACTCTTCACAAGTGGGTCGAGGAAATAA
1 TCGTCGGTGGTAGTCCAAGTTGAAGTGAACTCGGTACACTCTTCACAAGTGGGTCGAGGAAACAA
* * * * * * * * ** * * *
11840 TGAAGTGGACGTAGTCA-AGACACCGTCTTCGTCAGTTGTTACAATGATGACCCCAGAGTCTGTC
66 TGAAGTTGTCGTTGTTAGTGA-ACCTTCCTCGTCAGTTGTCACAACAATCACCCCAGAGTCCGTA
* * * * *
11904 TC-GACA-CT-GCCATCCTCAGTTGTGGCCCAGGTGGAAGTAAACTCAGTACACTCTTCACAAGT
130 GCAG-CAGCTCGCCATCATCAGATGTGGCCCACGTAGAAGTAAACTCAGTACACTCTTCACAAGT
* * * * * ** *
11966 GGGGCGAGGGAATACGGAGGTTGTTGTAGTCAAGACACCATCATCATCCGTTGTTACAACAATCA
194 GGGCCGAGGAAATAAGGAAGTGGACGTAGTCAAGACACCATCATCATCAGTTGTTACAACAATCA
** * * * *
12031 CACCAGAATCTGTCGCCG-TGCTACCATCGTCGTCGGTGGTAGTCCAAGTTGAAGTGAACTCAGT
259 CACCAGAATCTGTC-CCGACACTACCATC--C-TCAGTGGTAGCCCAAGTGGAAGTAAACTCAGT
* * *
12095 ACATTCTTCACAAGTGGGACGAGGGAATAGGGACGTTGTTGTCGTCAAGACACCATCATCATCCG
320 ACACTCTTCACAAGTGGGACGAGGGAATACGGACGTTGTTGTAGTCAAGACACCATCATCATCCG
* **
12160 TCGTTACAATAATTGCACCAGAATCTGTCGCCGTGCTACCATCG
385 TCGTTACAACAATCACACCAGAATCTGTCGCCGTGCTACCATCG
*
12204 TCGTCGGTGGTAGTCCAAGTTGAAGTGAACTCGGTACACTCTTCACAAGTGGGCCGAGGAAACAA
1 TCGTCGGTGGTAGTCCAAGTTGAAGTGAACTCGGTACACTCTTCACAAGTGGGTCGAGGAAACAA
*
12269 CGAAGTTGTCGTTGTTAGTGAACCTTCCTCGTCAGTTGTCACAACAATCACCCCAGAGTCCGTAG
66 TGAAGTTGTCGTTGTTAGTGAACCTTCCTCGTCAGTTGTCACAACAATCACCCCAGAGTCCGTAG
* *
12334 CAGCAGTTCCGTCATCATCAGATGTGGCCCACGTAGA
131 CAGCAGCT-CGCCATCATCAGATGTGGCCCACGTAGA
12371 GGTGAAGGTC
Statistics
Matches: 487, Mismatches: 98, Indels: 19
0.81 0.16 0.03
Matches are distributed among these distances:
426 111 0.23
427 2 0.00
428 6 0.01
429 342 0.70
430 4 0.01
432 22 0.05
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (428 bp):
TCGTCGGTGGTAGTCCAAGTTGAAGTGAACTCGGTACACTCTTCACAAGTGGGTCGAGGAAACAA
TGAAGTTGTCGTTGTTAGTGAACCTTCCTCGTCAGTTGTCACAACAATCACCCCAGAGTCCGTAG
CAGCAGCTCGCCATCATCAGATGTGGCCCACGTAGAAGTAAACTCAGTACACTCTTCACAAGTGG
GCCGAGGAAATAAGGAAGTGGACGTAGTCAAGACACCATCATCATCAGTTGTTACAACAATCACA
CCAGAATCTGTCCCGACACTACCATCCTCAGTGGTAGCCCAAGTGGAAGTAAACTCAGTACACTC
TTCACAAGTGGGACGAGGGAATACGGACGTTGTTGTAGTCAAGACACCATCATCATCCGTCGTTA
CAACAATCACACCAGAATCTGTCGCCGTGCTACCATCG
Left flanking sequence: Indices 10846 -- 11345
TGGTCAAGACACCCTCATCGTCCGTGGTGATCACGATGATCCCAGAGTCAGTTGCGGTAGTGCCG
TCCTCATCAGTTGTAGCCCAAGTAGATGTAAACTCAGTACACTCCTCACAAGTGGGGCGAGGGAA
TAGGGAGGTTGTCGTGGTCAAGACACCCTCTTCGTCTGTCGTCACAATGATTATACCGGAGTCAG
TTGCAACACTACCATCCTCGTCAGTCGTAACCCAGTTGGATGTGAACTCAGTGCATTCCTCACAA
TTAGGCCTTGGAATTAACGAAGTTGTTGTTGTTAGTGATCCTTCTTCGTCTGTGGTCACAATAAT
TATTCCACTGTCAGTAGCTATTGAACCGTCCTCATCAGTTGTGTCCCAAGTGGAAGTGAATTCAG
TACACTCATCACAATTGGGCCGTGGAAATAATGAAGTGGACGTAGTCAATACACCGTCTTCATCA
GTTGTTACAATTATTATACCGGAGTCAGTTGCAACACCATAATCA
Right flanking sequence: Indices 12371 -- 12870
GGTGAAGGTCGTACACTCCTCGCATGGCAATTCTGTGGGAGCAGCTACGGCCGATGTACACTGGC
CACAATTGTCAGCAGTAGCAGCTTCGGCCGGGGGTGGGCCATCATATATAATCGCGTTGTTATAG
CGATCACCTTCACTCCGTTCGTCACGACTGGAAATCGAGAAAAGAGACAAATCATATCCGAGCCC
AATGTCCACAGATATTGGCTCTAGATCTGGTTTATATTGGAACCACATGGTTAAAATGGACCCCG
AATATTCAAATTCCTCGATGGTAGTGTGGATGGCAAGTGCCATGCCTTCACCAAACCCACGGACT
ATCACTCCAGCCCAGTCTCCCATTGTGAAGAATATATCACCGGTTGAACTCGGGGAGAACTGAAC
GGTATGAGCGAAGTAATTCGTTCGGAGCAAAGTGATTCTAGAATTTTCAGCAAGGTGGATACATC
CGGGGCCATCAATATTTTGATCAGCCTGGATGATGTGGTTGTACA
Found at i:13889 original size:13 final size:13
Alignment explanation
Indices: 13871--13898 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
13861 GCAAATATGT
13871 GTTGTGACTACCC
1 GTTGTGACTACCC
13884 GTTGTGACTACCC
1 GTTGTGACTACCC
13897 GT
1 GT
13899 AGACTATGTC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.14, C:0.29, G:0.25, T:0.32
Consensus pattern (13 bp):
GTTGTGACTACCC
Left flanking sequence: Indices 13371 -- 13870
AAAAAAGCTAGTCTCATGAAGAGCCATGGTCGTCATCCCTGCCTTTTGTACATCTTGAAAAATTT
CAAAGTGGAACGGATCTGCGCAAATGATCCGGACATAAAAAATAATCTTGCTTACCGAAATTCTG
GGGTAAGATTCTATCTGACGGTGCGGGGGGAAATTTCAATCTTTACAACTGGGAAGACTTGACCA
GAACTTAATACTCCCTACTGATTGTCACTTTGGTTCAGTATTGAACCCACTTCCCAACAAAGAGC
GCTTGGATTGCGATCAGCTTTCTGGAAGCAGGAACCTCGCGTGTCTGCTGATGATCAGATCAATC
ACGTCAAAAAATTATACGCAGAGTCATACGAGGATGGCTACGCCAAAGAAGGAGTCGATCTAGAC
CCCTGACCTGCCAAGAATAGAAATTTTAGCATCATCCCACGTTAAGATGGAACATCATCCATGTA
CAGGCACTCTGACGAATGTAATAACTAGGAAAACAGCAAATATGT
Right flanking sequence: Indices 13899 -- 14398
AGACTATGTCCAGACAGTCCAAAAAAGCGGATTCCCGAGACCCTTCGAGCTAACACCGAATGTAA
CTCTATCATTCAATTACGTTTATTCTATAATTAGTCGCCGCGGTAGAACTTGGCCTCGATGAAAG
GCAACTTGGCAATCTGGCCGTCGCGCTTCTTGCCTCTGATCTCAATCTTGATGGGGGTACCGAAC
TTGTAGCCCTTCTCGATGTAGGCCTGGCCCACGTTACCACCACAAGTGGGGGAAGCAGAACCGGA
GGTGACGTAACCAATCTCCTTCTCGCCATCCTCGGTGAACACCTTGGAGTCGCCACGGGGCGCCG
GGCCCTTCAGCTTGATGCCGACTCTGCGGTGGGTGGTCAGCTTGTCCTTGATCTGGCTCAAGATC
TTCAGCGACCCGTTGAAGCCACCCTCCTCACGACGAGACTTGGGGATCAACCACGCCAACAGGGC
GTCAATGGGAGTCAATTCCTCGCTCAACTCGTTTCCGTAGAGACA
Found at i:19006 original size:11 final size:11
Alignment explanation
Indices: 18990--19021 Score: 55
Period size: 11 Copynumber: 2.9 Consensus size: 11
18980 ACCCCTCTGA
18990 ACCCTTCCCTG
1 ACCCTTCCCTG
19001 ACCCTTCCCTG
1 ACCCTTCCCTG
*
19012 ACCCTACCCT
1 ACCCTTCCCT
19022 TCATCATCAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.12, C:0.56, G:0.06, T:0.25
Consensus pattern (11 bp):
ACCCTTCCCTG
Left flanking sequence: Indices 18490 -- 18989
AAGAAGCACATCGAGTACTTTTTATAATGCGCTAGCCGCTGGTAATAGAGTGGTAGAGTACTGTG
ATTGTTGATAGTGTCTGTAGACCAGTAATTATAGAGAGTGAGTCGGTAGAAGATAGGTGGTGGTG
TGGATGGGGGATCTGATGTGATGCCATTGTTTGATTCCTTGGTTGTTTAATGCATCTCATCTGGT
CTTGCTTTAGGTACTAGGTGTTGTGAGATCAACTGCAATTAGCACAATTTTACTTCAGCAACTTC
TCACCAAGGAACAATTGCCTTGGAAACCCACATCACCACAGGATCCCTGACAGTATCGCTTCCGT
AGCTAATACTTTTCACCATTTTTACCTCTACGTCGCCACGACACCTGACACCGTACGATTGTATC
TAAGCCACTGTCTCGACGCATATTCGTAGATACCCACCGAATTAGGCAGTCTGATCCAGTCGAGT
CGACGATCCCAATACTAACAAACAGCCAAGCTGTGACCCCTCTGA
Right flanking sequence: Indices 19022 -- 19521
TCATCATCAACTCACTTTTGACCCTATCGCTACCTATATCACCCGCGTTTGTCCCGCGTCGGCTA
GCGTCGGCTACCGCCGACCGCATTGTCTACAACCATCAACCAAGCCACCATTACCAACACTGTAA
ACACATCCTTCTAACACATCCTTCTAACACATCGCTTTTCTTGCCCGTACCATACCGACCAGCCC
ATCCTTCGCTCTCTTCCATCTGCCAACCTCGCGTCCACCTCTTCCCCACCATCTCCGTTCCCCCG
CCTGCATGCACAAGGTTGCGGAGCCACACAACCCACCGCAATGGAAAGGCTCCCCGTGGAAGTGG
TAGAGCAGATCGCAGCCCACGTGGATAACCGGCTGCTCTTCCGGTTCATCCAATTGGTGGCCCGC
GACAGCCGTTTCCGCCATGTCTACGACCACTTGTGCCGTCGGCACTACACCATCAAGATCGACAA
AGACCCCGAGAACTGTAAGCTTCTCACCCAGTTGGACGACGTGAT
Found at i:19169 original size:13 final size:13
Alignment explanation
Indices: 19151--19184 Score: 68
Period size: 13 Copynumber: 2.6 Consensus size: 13
19141 CAACACTGTA
19151 AACACATCCTTCT
1 AACACATCCTTCT
19164 AACACATCCTTCT
1 AACACATCCTTCT
19177 AACACATC
1 AACACATC
19185 GCTTTTCTTG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.35, C:0.38, G:0.00, T:0.26
Consensus pattern (13 bp):
AACACATCCTTCT
Left flanking sequence: Indices 18651 -- 19150
TGATTCCTTGGTTGTTTAATGCATCTCATCTGGTCTTGCTTTAGGTACTAGGTGTTGTGAGATCA
ACTGCAATTAGCACAATTTTACTTCAGCAACTTCTCACCAAGGAACAATTGCCTTGGAAACCCAC
ATCACCACAGGATCCCTGACAGTATCGCTTCCGTAGCTAATACTTTTCACCATTTTTACCTCTAC
GTCGCCACGACACCTGACACCGTACGATTGTATCTAAGCCACTGTCTCGACGCATATTCGTAGAT
ACCCACCGAATTAGGCAGTCTGATCCAGTCGAGTCGACGATCCCAATACTAACAAACAGCCAAGC
TGTGACCCCTCTGAACCCTTCCCTGACCCTTCCCTGACCCTACCCTTCATCATCAACTCACTTTT
GACCCTATCGCTACCTATATCACCCGCGTTTGTCCCGCGTCGGCTAGCGTCGGCTACCGCCGACC
GCATTGTCTACAACCATCAACCAAGCCACCATTACCAACACTGTA
Right flanking sequence: Indices 19185 -- 19684
GCTTTTCTTGCCCGTACCATACCGACCAGCCCATCCTTCGCTCTCTTCCATCTGCCAACCTCGCG
TCCACCTCTTCCCCACCATCTCCGTTCCCCCGCCTGCATGCACAAGGTTGCGGAGCCACACAACC
CACCGCAATGGAAAGGCTCCCCGTGGAAGTGGTAGAGCAGATCGCAGCCCACGTGGATAACCGGC
TGCTCTTCCGGTTCATCCAATTGGTGGCCCGCGACAGCCGTTTCCGCCATGTCTACGACCACTTG
TGCCGTCGGCACTACACCATCAAGATCGACAAAGACCCCGAGAACTGTAAGCTTCTCACCCAGTT
GGACGACGTGATGCCCCACCTCCAGCGGGTGACAATGGTTCCGCAACACACCTACGGCCACCCGA
GGCTCAACCAGGGGATTATCAACGACTACATCGAGACCTTCCCGGAAAAAAGCATCGCCATCGAG
TTCCCCTGTGTCAGCGGAGGTTTTGGCAAGGTGTTTGACCATGTG
Found at i:22528 original size:14 final size:14
Alignment explanation
Indices: 22509--22535 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
22499 AAAACGAGAG
22509 GATGGTGAAAGAAC
1 GATGGTGAAAGAAC
22523 GATGGTGAAAGAA
1 GATGGTGAAAGAA
22536 TTCTGGCCTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.44, C:0.04, G:0.37, T:0.15
Consensus pattern (14 bp):
GATGGTGAAAGAAC
Left flanking sequence: Indices 22009 -- 22508
CTACTTTGGTGGCATCAAGAAGCTCAGCAGCAACCTGCAGGGCGGAGACGTGCTGTACTGGGAGT
ACGCCAACCCTCACCGGTTCGACCTGAGCCAGCCCGTGCTCGGGCTGACCCGCCAGGTGAGGTAT
ATATAGCTGCATTATTCATTACAATATCGAACTAATATCGAACTACCTAAAGTAACTAGCGGTGT
TCTGAGGAGCCCAGTGGCCAGCTGGCACGTTCACCCGTAGTACAACTCGAAGTTGAACCCGTCGT
GGATCTCGTAGTCCGCCAACGTGATGTGGTCCTTATACACTTTGTAGCCCTTTTTGAGCACGATC
TTCTGCCAGTCAGTGCCTGTGAGGGCCCCGATCATCTTCTTGAGGTCGCCCACCGAGTCCTCCTC
GAGGCATTTGACCTTGATCTTCTTCCCCAACCGATCGTTAGCCAGCACCTCGATCATCGCGGTGG
TCGTGTGCGAACGAAGGTTTTTGGATGGACAAACTAAAACGAGAG
Right flanking sequence: Indices 22536 -- 23035
TTCTGGCCTAAAAATTAGAGAATTGGAGCATAGAATGTGGCATTGAAGGTTGCATTGAGAGGTGG
CATTGAATGCTACCACTTAATGGTGACATTGAATTCTATGGTGACATTGAATATCACTTTATGGT
GGATTGCGTGGTAGCAAAGTAGAGTGACCTTGGTGAAATTGTAGTATGTGTCTGACCAGTCCCAA
TGACTCGTCTCATGAAACGGTCTCGCGCCCACCTCCTACATCCCTTCCCCCGCCTTAGTCATTTG
CCACCGACCGTTGGGGCTTACGCCCAACCTAATGCGGAAAGACTCCCGACAGGCGGTCACCAGGA
AACCCCCCGAAACACCGTTTCAGGCCACATTCCACAGGTCACTGATTATAATCGCGACAGCGACG
CGCGGTGGCTGCCGCGTATCAGCACCACCCGGGATTAACGCGCCATCTGCGGTCGGAACCCACAG
GGTGATTAGGTTTACCAACGGGCACCAGTGCTCAAACCAGCCCGC
Found at i:22603 original size:13 final size:12
Alignment explanation
Indices: 22572--22607 Score: 54
Period size: 13 Copynumber: 2.9 Consensus size: 12
22562 AGCATAGAAT
22572 GTGGCATTGAAG
1 GTGGCATTGAAG
*
22584 GTTGCATTGAGAG
1 GTGGCATTGA-AG
22597 GTGGCATTGAA
1 GTGGCATTGAA
22608 TGCTACCACT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
12 10 0.48
13 11 0.52
ACGTcount: A:0.25, C:0.08, G:0.39, T:0.28
Consensus pattern (12 bp):
GTGGCATTGAAG
Left flanking sequence: Indices 22072 -- 22571
GTACGCCAACCCTCACCGGTTCGACCTGAGCCAGCCCGTGCTCGGGCTGACCCGCCAGGTGAGGT
ATATATAGCTGCATTATTCATTACAATATCGAACTAATATCGAACTACCTAAAGTAACTAGCGGT
GTTCTGAGGAGCCCAGTGGCCAGCTGGCACGTTCACCCGTAGTACAACTCGAAGTTGAACCCGTC
GTGGATCTCGTAGTCCGCCAACGTGATGTGGTCCTTATACACTTTGTAGCCCTTTTTGAGCACGA
TCTTCTGCCAGTCAGTGCCTGTGAGGGCCCCGATCATCTTCTTGAGGTCGCCCACCGAGTCCTCC
TCGAGGCATTTGACCTTGATCTTCTTCCCCAACCGATCGTTAGCCAGCACCTCGATCATCGCGGT
GGTCGTGTGCGAACGAAGGTTTTTGGATGGACAAACTAAAACGAGAGGATGGTGAAAGAACGATG
GTGAAAGAATTCTGGCCTAAAAATTAGAGAATTGGAGCATAGAAT
Right flanking sequence: Indices 22608 -- 23107
TGCTACCACTTAATGGTGACATTGAATTCTATGGTGACATTGAATATCACTTTATGGTGGATTGC
GTGGTAGCAAAGTAGAGTGACCTTGGTGAAATTGTAGTATGTGTCTGACCAGTCCCAATGACTCG
TCTCATGAAACGGTCTCGCGCCCACCTCCTACATCCCTTCCCCCGCCTTAGTCATTTGCCACCGA
CCGTTGGGGCTTACGCCCAACCTAATGCGGAAAGACTCCCGACAGGCGGTCACCAGGAAACCCCC
CGAAACACCGTTTCAGGCCACATTCCACAGGTCACTGATTATAATCGCGACAGCGACGCGCGGTG
GCTGCCGCGTATCAGCACCACCCGGGATTAACGCGCCATCTGCGGTCGGAACCCACAGGGTGATT
AGGTTTACCAACGGGCACCAGTGCTCAAACCAGCCCGCCTCCGACACAAAACTCTAAGTACGAGC
CACGCGTCCGAATACGTCAATTATCATCTGATACGGTGTGGTGGG
Found at i:24175 original size:3 final size:3
Alignment explanation
Indices: 24167--24192 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
24157 TCCCCGAGGC
24167 CGA CGA CGA CGA CGA CGA CGA CGA CG
1 CGA CGA CGA CGA CGA CGA CGA CGA CG
24193 TGCTGGTCGC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.31, C:0.35, G:0.35, T:0.00
Consensus pattern (3 bp):
CGA
Left flanking sequence: Indices 23667 -- 24166
CGCCCCTCACAACCACCCGAACCACCCCTCCTAACCGCTCCTAACCCCTCGCCCACCCCACCAAG
CCCGTCTTCCCCACCCATCTCTCTTCGCGCCGCGCGCGTGTGCCCAAAATTTCCCCAGTGAGCCA
ACTCCGTAACCATGAGCCCACCCCTGAAGCCGCCCAAACGGCCAGGGTTGTACTACTCCCACCTG
AAAGACGGCCTGCTGCGGCTGGCTCTGGCTCTGCTGCTGGCACTGCTGCTTCCGCTGACCCCGCA
ACAGGCCCTGCCCACCACCGCCACCCCCCAGACATCCCGCAAGCTGGTGCCTCGCCAGAACCTGG
GCAGCCAGGTGGCGGTCCCACCAAAGCCCCAGCGCACCCGCCTGCGGCTGATAGCGCTCGCGGTG
CTGACGTATGCCGACCAGGAGCGCACGTACTTGCGCAAAATCCGCAACCAGGTGGTGGACGACTA
CTACACCAAGGGGATCTCGGGGGCGCTGCTGGAGCTCCCCGAGGC
Right flanking sequence: Indices 24193 -- 24692
TGCTGGTCGCTGCCGACCTAGAAGACTACCCGAACGACCTCACGCTCGCGCTGTTGCAGTTGGGC
GAGAACGGCGAGGTGCCGTCCAACATCACCCAGTTGGCACTGAAAGAGGGATCCGACGACCCCCG
GGTGTTGGAGCGGCTCGAGTGGCAGCTGATGTTGACGCTGGTGCTCACGGGCGACGTGGTGCGCC
AGGAAAAGACCAAGCTCACCCTGGCGGCGTGGCTGGACAACCCACAGGAGCTGTTGGTGCTCCAG
GCGTACAAGGACCTGTTGTGGTACGGGGTGCGGGCCAAGCTCTTGGGCCGCAGCGTGCTGGAGCA
CCACAAGGTGATCCAGTACCGGCGCACCCAGGTCGACCAGGTGATGCTGGAGATCCTGGGGTTCG
CCATCAGCTACGACGACGGGGCACCGCCGCCGTTGGACCAGGTGCGCCGCACGCTCGACCGCTGG
GACCGGTGCGAGCTGTTGTGGCGTACCCTGGAGGAGATGGCCCGC
Found at i:28460 original size:14 final size:14
Alignment explanation
Indices: 28443--28484 Score: 75
Period size: 14 Copynumber: 3.0 Consensus size: 14
28433 GCGGTGGACC
*
28443 GGTGCAAGCGGACT
1 GGTGCAAGCAGACT
28457 GGTGCAAGCAGACT
1 GGTGCAAGCAGACT
28471 GGTGCAAGCAGACT
1 GGTGCAAGCAGACT
28485 ACCAACAGAA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
14 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.38, T:0.14
Consensus pattern (14 bp):
GGTGCAAGCAGACT
Left flanking sequence: Indices 27943 -- 28442
AAAGGTTTGAAGGCTGTCATTTGGATAAACTATTATATGCAGTATATTTTGGGTCAAGGTTATGG
CATTGAATAGAGATAACAGAGACAGCGCATCGTAGTGAAATAATCGTGTATACACTTGAGAGAGT
GACAGAAGTTGTTTTTACATATTGAACTGATATTCGTCACCCATATTCACTGATTTCGTGTTGTT
CTTTCATATCTCGTGATATCGGAGTCGGGTGCAAAAGAACCCTAGCGATATCGAATAAATTCTTT
CTCTGTAGGTCTTTAGACGTTGATGGTCACAGAGCCAAAAAGTACGTGCTTCCTACCTTGGTATA
GATATTTCACCAGAGTTTTCCTAATTTTTTGAATAATTTCAAGAAAATGTGTCCAGATGTTTGAG
AAGTGCTTAACAACTTGACCCATCCCACTACGTCAACCCACGATTCGACACCATAAAGCTACAAA
TCCTTCGAGTTCTCCGGGGAATGCTAACATCACACGCGGTGGACC
Right flanking sequence: Indices 28485 -- 28984
ACCAACAGAAATACCAACAGAACGTTTGGCACTACTCCACTCATCTACACCACTTCTTCGTCTAT
CGTGTCATTATATATACAAGTCTAAAGATGGGTGTCCAACAACCCCTTGATCTGGGCCACCCGGT
CGCCCTTAATGTTGGCGTACCCCGCGGTGGTGTTCACCGTCACCACAAGCAGGGGGTCCAACTGC
AACAAGTCCTTCTTGAACTGGGTCACGTCGCCCTTGATCCGCTTCACCTCGGTCTGGATCTTGGT
GTTCTGGATCTTCAAGTACACGGGCCACTGGGAGAACTTGGTCTTTTCGATGGAGTAGTTGCCGA
CGCCAAACCCGTTGTTGGGCAACTGGGAGTACGACACCTCCAGGAGGGCAGGGATCTTGTACAAG
GGCACGGGTGGCTTCACCAAGCTCACCCGGACCGACTTGAGCGTGGCTAAACTGGGTCTCATGGT
GGGGTGGTTGATAATTTTTCAGGGATTTGTAGATGTGGTGCGGGT
Found at i:34011 original size:10 final size:10
Alignment explanation
Indices: 33996--34027 Score: 55
Period size: 10 Copynumber: 3.2 Consensus size: 10
33986 CATCCCCACC
33996 CACACACTCT
1 CACACACTCT
34006 CACACACTCT
1 CACACACTCT
*
34016 CACACTCTCT
1 CACACACTCT
34026 CA
1 CA
34028 TGCAACCCCA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 21 1.00
ACGTcount: A:0.28, C:0.50, G:0.00, T:0.22
Consensus pattern (10 bp):
CACACACTCT
Left flanking sequence: Indices 33496 -- 33995
GGGCTGGTCCGGGAGCAACGAGGAGAGGCTAGAGAAGATACACACCAGACTGTGGTTACGATTGG
TGGCACTGGGCGCCACATTGGGAACAATGGTAGCAGATCAAGCGACCAGGAGACAATAGTGGGGG
TAATTCGAGTGCACACGAGAAAAACATGATCTGGGTTATCGGGCGATCTCGAAGCTCGGAACTAA
ACATTGAATCAGAGAGCTTACGAACACGTGACTGAAACTTTTGGGCTAGAGGAGTGTGGAAACAA
CACGAGGAAAGAGGCACTAATCCATCAACCAGAGACTACAAAGCCACTTTCCAGACAACACTGAC
TGCGTACATACCCTACGCAACGGCCTTCCCTGCGTTCCCCTTCTCAATTGCAATCTCTGGTTCTC
CAAACGCGTCTGCATACACGCTTGATCCACGTCAACAACTACAGGCAACCGTCTTAATCACTCAC
ACCCCAAAATCAGTCTCACCATCCAACTCTTAAACCATCCCCACC
Right flanking sequence: Indices 34028 -- 34527
TGCAACCCCACCCCTCCACAACTGTTTGCTGTTCCCTAGCGCGAACATACACCAACCAAGCCCAA
CCAAAGTCTGTAGACCCAACCACAATTCTATCCACCCATCTAATCTACCTATCTCTTACACCCCA
CTAGAATTCCACCACCACCCCACCACCATCTCACCCCCATTCTCATCACTTCTCCCCACTCACCC
CCACCTCCTTCCCACCGTCCTTCCACGCTTTTCGCTCGCGACGCGAAAATTTCACTCAACGTGTC
CAAACGACAATGAAGTTGGACGTGACGAAGCAATTCAGCACGAGGCTGGACCGGGTGAAGGGGAT
CGATTTCCACCCCACCGAGCCCTGGGTGTTGATCACCCAGTACTACGGCAAGGTCGACATCTGGC
TGTACGCCACCAACCTGGTGGTGAAGCTGATCCAGGTGCTGGACACCCCTGTCCGGTGCGGCAAG
TTCATTGCCCGCAAGAACTGGATCATTGTCGGAGCCGACGACTTC
Found at i:36967 original size:21 final size:22
Alignment explanation
Indices: 36942--36982 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
36932 AAGCCAAGGC
36942 CCACCAGCAGGAGGA-CAGCTA
1 CCACCAGCAGGAGGAGCAGCTA
*
36963 CCACCAGCAGGTGGAGCAGC
1 CCACCAGCAGGAGGAGCAGC
36983 AGGCGGAGAC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 14 0.78
22 4 0.22
ACGTcount: A:0.29, C:0.34, G:0.32, T:0.05
Consensus pattern (22 bp):
CCACCAGCAGGAGGAGCAGCTA
Left flanking sequence: Indices 36442 -- 36941
CCCAAGTGGAAGAAGCTCGGGGACTTGGCGCTTGCCAAGTGGCGCGTGGCCATGGCCCAGGACTG
CTACTGGTTGGCGCAAGACTACCCGCTGTTGTTGCTTGTGTTGCTGTCGCTGAACAACCACCAGG
AGCTTGCCAAGTTGGCGGACGCGGCCACCAAGGCCGGGCGCTACAACATTGCCTACCAGGCGCAC
TGGTTGACGGGCAACACCGAGGCGTGTCTCGACTTGTTGGTTACGCTGGAGCGGTACCCCGAGGC
GGCGGTGTTTGGTAAAAACTACGGCGTCAACCCGAAAAAGGTGGCCCACGCCATCGACTTGTGGA
AGCAGCTGCTTGTCAAGAACAAGAAGCAGCTGATTGCCGACCGGTTGGAGGACGACAGCGCGGAC
GCGGCCACCGAGGGCGTGGCGCAGTTGTCGCTTGACTCTGTCCAGGAGGGCCCCGTGGTTCCCGA
TGCTGCGCCCGTGGCCGAGGCCGAGGGGGTGTTCCAAGCCAAGGC
Right flanking sequence: Indices 36983 -- 37482
AGGCGGAGACCCAGTTCAACGAGGCCCACGACCAGTTTGAGGACTCGCAGGCCTTCCAGGACTCG
CAGGCTTACCAGGGCCAGGGCTATCCCCAGGGCTACCCGGCCCAGGGCTACCCTCAGGAAACCTA
CCAGGAGCCCCAGGAGGGGTACCAAGCGCCCCAGGCTGGCCAGGCTACCTACGACGATGACGAGC
CGTCGTTGATTTAGGCAAAATGTATAGTAGATCGGTAATAAGAAAGGATTAGAGAGAGGTAGGGA
TGATGGGGATGGTAGAGTGATGGTGTGAATGGTAGAGTGGTGAGAATGGAGTGATGGTGAGGATG
TTGGAGTGATGGTGAGAATGGTGGAGTGATTGTGAGACCGTTGAGGGGCTGTTAGTCGATGATGT
ATTTTTGGTAGTCTTAAAAGCTGGCTATGGGGATGTCACCAGAGTTCATTAGTGTCTCAAAGGCT
TTTGCGCTTATCGTCTATTCAAATACTCGTCTAGCAATTACTTAG
Found at i:37078 original size:27 final size:26
Alignment explanation
Indices: 37048--37105 Score: 64
Period size: 27 Copynumber: 2.2 Consensus size: 26
37038 CCAGGACTCG
*
37048 CAGGCTTACCAGGGCCAGGGCTATCCC-
1 CAGGC-TACCAGGCCCAGGGCTA-CCCT
*
37075 CAGGGCTACCCGGCCCAGGGCTACCCT
1 CA-GGCTACCAGGCCCAGGGCTACCCT
37102 CAGG
1 CAGG
37106 AAACCTACCA
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
26 5 0.19
27 19 0.70
28 3 0.11
ACGTcount: A:0.17, C:0.40, G:0.31, T:0.12
Consensus pattern (26 bp):
CAGGCTACCAGGCCCAGGGCTACCCT
Left flanking sequence: Indices 36548 -- 37047
TGCTGTCGCTGAACAACCACCAGGAGCTTGCCAAGTTGGCGGACGCGGCCACCAAGGCCGGGCGC
TACAACATTGCCTACCAGGCGCACTGGTTGACGGGCAACACCGAGGCGTGTCTCGACTTGTTGGT
TACGCTGGAGCGGTACCCCGAGGCGGCGGTGTTTGGTAAAAACTACGGCGTCAACCCGAAAAAGG
TGGCCCACGCCATCGACTTGTGGAAGCAGCTGCTTGTCAAGAACAAGAAGCAGCTGATTGCCGAC
CGGTTGGAGGACGACAGCGCGGACGCGGCCACCGAGGGCGTGGCGCAGTTGTCGCTTGACTCTGT
CCAGGAGGGCCCCGTGGTTCCCGATGCTGCGCCCGTGGCCGAGGCCGAGGGGGTGTTCCAAGCCA
AGGCCCACCAGCAGGAGGACAGCTACCACCAGCAGGTGGAGCAGCAGGCGGAGACCCAGTTCAAC
GAGGCCCACGACCAGTTTGAGGACTCGCAGGCCTTCCAGGACTCG
Right flanking sequence: Indices 37106 -- 37605
AAACCTACCAGGAGCCCCAGGAGGGGTACCAAGCGCCCCAGGCTGGCCAGGCTACCTACGACGAT
GACGAGCCGTCGTTGATTTAGGCAAAATGTATAGTAGATCGGTAATAAGAAAGGATTAGAGAGAG
GTAGGGATGATGGGGATGGTAGAGTGATGGTGTGAATGGTAGAGTGGTGAGAATGGAGTGATGGT
GAGGATGTTGGAGTGATGGTGAGAATGGTGGAGTGATTGTGAGACCGTTGAGGGGCTGTTAGTCG
ATGATGTATTTTTGGTAGTCTTAAAAGCTGGCTATGGGGATGTCACCAGAGTTCATTAGTGTCTC
AAAGGCTTTTGCGCTTATCGTCTATTCAAATACTCGTCTAGCAATTACTTAGTGATGGGCTCAAA
CATTCTCCAGTCCAACCACGACCAGCGCTTGGCCTTGTCGCCGTCCTGGGCCTCGGCGGCGGACA
CAATGACAATGGCGTGCTCGCCCTTGTCGTTCTGGGCCTTGTAGG
Found at i:37274 original size:20 final size:20
Alignment explanation
Indices: 37251--37344 Score: 92
Period size: 20 Copynumber: 5.0 Consensus size: 20
37241 GATGATGGGG
*
37251 ATGGTAGAGTGATGGTGTGA
1 ATGGTAGAGTGATGGTGAGA
37271 ATGGTAGA--G-TGGTGAGA
1 ATGGTAGAGTGATGGTGAGA
*
37288 AT-G--GAGTGATGGTGAGG
1 ATGGTAGAGTGATGGTGAGA
* *
37305 ATGTTGGAGTGATGGTGAGA
1 ATGGTAGAGTGATGGTGAGA
* *
37325 ATGGTGGAGTGATTGTGAGA
1 ATGGTAGAGTGATGGTGAGA
37345 CCGTTGAGGG
Statistics
Matches: 62, Mismatches: 6, Indels: 12
0.77 0.08 0.15
Matches are distributed among these distances:
14 2 0.03
16 2 0.03
17 18 0.29
18 1 0.02
20 39 0.63
ACGTcount: A:0.26, C:0.00, G:0.47, T:0.28
Consensus pattern (20 bp):
ATGGTAGAGTGATGGTGAGA
Left flanking sequence: Indices 36751 -- 37250
GCCATCGACTTGTGGAAGCAGCTGCTTGTCAAGAACAAGAAGCAGCTGATTGCCGACCGGTTGGA
GGACGACAGCGCGGACGCGGCCACCGAGGGCGTGGCGCAGTTGTCGCTTGACTCTGTCCAGGAGG
GCCCCGTGGTTCCCGATGCTGCGCCCGTGGCCGAGGCCGAGGGGGTGTTCCAAGCCAAGGCCCAC
CAGCAGGAGGACAGCTACCACCAGCAGGTGGAGCAGCAGGCGGAGACCCAGTTCAACGAGGCCCA
CGACCAGTTTGAGGACTCGCAGGCCTTCCAGGACTCGCAGGCTTACCAGGGCCAGGGCTATCCCC
AGGGCTACCCGGCCCAGGGCTACCCTCAGGAAACCTACCAGGAGCCCCAGGAGGGGTACCAAGCG
CCCCAGGCTGGCCAGGCTACCTACGACGATGACGAGCCGTCGTTGATTTAGGCAAAATGTATAGT
AGATCGGTAATAAGAAAGGATTAGAGAGAGGTAGGGATGATGGGG
Right flanking sequence: Indices 37345 -- 37844
CCGTTGAGGGGCTGTTAGTCGATGATGTATTTTTGGTAGTCTTAAAAGCTGGCTATGGGGATGTC
ACCAGAGTTCATTAGTGTCTCAAAGGCTTTTGCGCTTATCGTCTATTCAAATACTCGTCTAGCAA
TTACTTAGTGATGGGCTCAAACATTCTCCAGTCCAACCACGACCAGCGCTTGGCCTTGTCGCCGT
CCTGGGCCTCGGCGGCGGACACAATGACAATGGCGTGCTCGCCCTTGTCGTTCTGGGCCTTGTAG
GCAACTTCGCCCTCCTTGAGGACGTATGACTCAACAACGTTGTCGGCGGCAACGAGGGTGGCAGT
CAAAGCGGCGATGATGGAAACAAACTTCATGCTGGTGATGATTTGGAGAGAGTTGGTGTGGGCTT
TTATAGCTGGAGTGTGGAGTGCCATTGGAAGCCCAATGTGGTTATTACACTCAAGCGGCGTTCCT
TTGCAAGCTCAATGCGGTAGAGTTGGGTCACTACATGGTCCTTTC
Found at i:39176 original size:10 final size:10
Alignment explanation
Indices: 39157--39224 Score: 52
Period size: 10 Copynumber: 6.9 Consensus size: 10
39147 GGAGAATACA
*
39157 GGAGGGGATG
1 GGAGGAGATG
39167 GGCA-GAGATG
1 GG-AGGAGATG
*
39177 AGAGGAGATG
1 GGAGGAGATG
39187 GGAGGAGATG
1 GGAGGAGATG
* *
39197 GGGGGAAGA-A
1 GGAGG-AGATG
*
39207 GGAGGA-AAG
1 GGAGGAGATG
39216 GGAGGAGAT
1 GGAGGAGAT
39225 TAGAAGAAGA
Statistics
Matches: 45, Mismatches: 8, Indels: 10
0.71 0.13 0.16
Matches are distributed among these distances:
8 1 0.02
9 8 0.18
10 32 0.71
11 4 0.09
ACGTcount: A:0.34, C:0.01, G:0.57, T:0.07
Consensus pattern (10 bp):
GGAGGAGATG
Left flanking sequence: Indices 38657 -- 39156
CGGTTCAATTGAGCAAAGTGGAAGGCGACCTGAGACTGGATAAGCTCCGAAAACACGTTGCCCTG
GATACATGACATCCCTGGCACCGGGGGCGCCGAGAAAAGCATGTCTACTCCGAGCAAGTGGCACC
TCTTGTTAAAGTCGGCTGGAGCCAAGTTGTGCACCTGGCACATTCGATTCTTGGCAAACAGCGAC
CAGTTCCCAGGAGCGTACCCGAGATCGACCACGGACTTGACTTGTGGGGTGAAGAGCCCGTACTT
CTGATCAAGCCGGTGAAGTTTGGCCTGCATCGACATCGAAACCTGGTCGAATTTGCGCTGGCGGG
GCAGGGGCAGGGTGGCGCCATTAGATTTAGACGCATAGCAACGTAAGGGGATGTAGCGTGGCCAT
CGTAGGAGCATGATTTGGGGGTTGCAACGGTTCTGTTTTGACGCAAATGACGTGCATAAACGCGT
CCACGCGACTATGGAGATGGAAGACGGAGGATATGGGAGAATACA
Right flanking sequence: Indices 39225 -- 39724
TAGAAGAAGAGAAATCAAAGAGGACGAAACTATCGACAGTTCAGGTGATCGTGAATTATGAAATC
GCCTATCTGATAAACCTCACTACACTTAGCTATCACCATTCGTTAGCTACAAAACCTAAGCCTCA
ACGTGACCGATGTTCCCGGCCTGGATGAGCCCCAAATGGGTCACCTCTTGCGCGTAGCGAATCGA
GCTCACCTTGTACTTCATAGCATTGGCCCCGACGTTGGCAAGTCTGTCGGCCTCATCGTTGCCCT
TGTCTTTACTGTGGCCCGAAACGTGCTCAATCCTTAGCTCGTCCCATCCCTTCTCTTTGTAGTAG
TAGTTCACCACCTTCATAAGACTCAAGGTCGAGGTAATGAGGTCCTGGTTGACCACGGGCGAGCC
GTAGGTGGTTTTGAATCCGTTCGCAATCCACTTCTTGCACCACACCGTCAACGCGTTGATGGCGT
ACTTAGAGTCGGAAATAACTACAACGGGCTGAGTAAGGTTCCCCG
Found at i:47316 original size:36 final size:36
Alignment explanation
Indices: 47258--47346 Score: 97
Period size: 36 Copynumber: 2.5 Consensus size: 36
47248 CGCTTGACAT
* * *
47258 GACTCCTCCGGCTGACTGTCAGACAGCCAGTCTTCG
1 GACTCTTCCGGCTCACTGTCAGACAGCCAGACTTCG
* * * *
47294 GACTCTTCCGGTTCACTTTCAGACAGCGAGACTTTG
1 GACTCTTCCGGCTCACTGTCAGACAGCCAGACTTCG
* *
47330 GACTCTTCGGGCCCACT
1 GACTCTTCCGGCTCACT
47347 TTTAGCTTCA
Statistics
Matches: 43, Mismatches: 10, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
36 43 1.00
ACGTcount: A:0.17, C:0.34, G:0.24, T:0.26
Consensus pattern (36 bp):
GACTCTTCCGGCTCACTGTCAGACAGCCAGACTTCG
Left flanking sequence: Indices 46758 -- 47257
CCAAAACTGTTTGATCTTCCAGATTGTGCTGGGTTGGAGTAGACGCTTCTTCGTCTTCGTCAATC
GTTTCTGGCTCCACCACGCTTAATATCTGAATGGACGCACGCCGCTTTCGGGGCGGTCGATCGGG
GATAAACACTTGAATTGGATTCTCCAGCTCTTTTGATATCTGAAAGGACGGACGCCGCTTTCGGG
GCGGCCGATCGAAAATGAAGACGTGATTTGGAGCCTTCGCGGCCTTCGAACCTTCGGGCTTTTGG
AGGTCACCACCAACACCAAGGTCTGAGTCAATCAGACTTCGTGGGGTCAAAAGTTGACTCTGGGG
TCCGCCAACCTCCAGAGAGTTGGCACGAGCTTCAGCGGAATTCGCACTTATCGCACCTTCCAGTA
CACTGCTGGTAGGTTTCTCGCCTGACATGCATTCCCCCTGGAGATCTGAATCAATCGGTCTCTGA
TGACACCTTTCTCGCACAGGTAACGTGGCTGCCCTCGCTTGACAT
Right flanking sequence: Indices 47347 -- 47846
TTTAGCTTCAGACTCTGTCTCTGTGTACGTTGGTACAAAGTGACGAAGGTGTGTTAGGTAGTTTG
ACTTCTCATCGTAACCGGTGTGGAGGGGATCGTGTAAGCCAACATATCGCAAACGATTGTACCGA
TCGAAATTGACCTTCCACACGTATTCCATGGCCATTTGACCAAGCCGAGCCAAGTCGTCTGCTTT
CTCGTTACAAAAATGACCACGGTGGCTATTAACATGCGTAATCTCAAGACGAGTTCTCCAGTAAC
GCAGATCATAGTGTCCATTGATCGCAGCGATCATTTCGCAATTCCTTTTGACAAGATCTTGGTCT
GCAAATGGCTGCCCGTTTGCTTTACAATAACCTTTCATTCGCAAATCAACGTATTCTCTGGCCAA
ACGGGCATTAAATGCCAGATCTGTGAAGATTCGAGAAGGGCGATAGCAAACATGGTCATCAATGT
CATCCTTCAATTTCTTAAGAATTCTCCAAAGTGCCAAAAGTTCCG
Found at i:50631 original size:13 final size:13
Alignment explanation
Indices: 50615--50641 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
50605 AATCCATTCA
50615 AGCAATCCCTCTG
1 AGCAATCCCTCTG
50628 AGCAATCCCTCTG
1 AGCAATCCCTCTG
50641 A
1 A
50642 CAAACCTTCG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.26, C:0.37, G:0.15, T:0.22
Consensus pattern (13 bp):
AGCAATCCCTCTG
Left flanking sequence: Indices 50115 -- 50614
CCTTTGGCCCGAGTCCCGTCAGGTTCCGTGGGGGTCCGTTGGTGACTCCTCCGGTGAGGTTTCCC
CGGGTGACTCTTGAGTCATCGACATGCATAGGAGGGGAAGCCCGGGTTGGGCACCCAACAGAAGG
AACGAGGAATATATAGCGAGAGATTGGGTCGCAAGCGGTGTGTCATTGCTGGTGTATTGTTTGTG
TCGTCGCTACCTCTCGCTTACTTCGGTTGAGGGGTTGGAGGGCCCAGCCCAAAGTGGTGTTACTC
GAGACTCGGCCGTAAACGCATATGGCAGATTTGGCACCCATTGTCGGGTCAATCGAGGCTGGCCC
GGGTTTGTGGCAAATCCGGTTGGCGTATAAATTGCGGTGTAGGGACGGGCCTTTATTGGGGGGAA
ACTACGAGATAAACACGCCAGTCACGGTGGATTGTGCATAGCCAGACCTTCTGGTCAACTGCAGT
GACATTCTTGGGCCAATCCTCGCGGCCTCAACGGCAATCCATTCA
Right flanking sequence: Indices 50642 -- 51141
CAAACCTTCGAACTGACCACTGTAAGACACCTCTTACAATACAGCCTCACAAACCCCACTCCTGC
AACCACCACCGCTTTCTCACCACCCTCTACCTCTGACATATATGTCCGAGCCTACCCGGCTTCAA
CCGGGCGGTCTCCGATGCCAAACGGTTTGGCCGTTGTAACGGTCGTGGTTGCTTTTACCGGAACC
GCCCGGACCACCAATAATCCCTACAACACCCACCCCCTTGCCTTCCTGGTCCCCTTTCTCGTTCC
CCTTCTTCCGTTTCCTCGTTCTCCCGCTCTACTGCTGCCTCCGCCGTCCTCCGCATCGTGGACTT
ATTCCCCCGCAAATTTCCGACACCACCCACTACCACGCCACGCCACGCCCAGAGCAGCTGCCGCC
GCAAATTTTGGCCAGCACCCTCTACACCCTCAACACCACCACTCCCGACGGTCGTCGTCCCTGCC
CCGTAGCCCCCGTGCCCACTTTCCACCTCGTCTCTGATTCCCCTC
Found at i:57731 original size:12 final size:12
Alignment explanation
Indices: 57714--57738 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
57704 GCTTGAGAGG
57714 CCTTTTTGGCAA
1 CCTTTTTGGCAA
57726 CCTTTTTGGCAA
1 CCTTTTTGGCAA
57738 C
1 C
57739 AACCGGGGAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.28, G:0.16, T:0.40
Consensus pattern (12 bp):
CCTTTTTGGCAA
Left flanking sequence: Indices 57214 -- 57713
CCCGGTACGGACCCGACGCTTTTCCCCTTGGTGGTTTCGACGCTTTCCTCGTGGTTGGGCTTCGA
CATTGGTCCTAAGATTCTCGCCAACGGTGGTGACATCTGGGGTGCTATTGGTCCCAAGTTGTCTC
AGGAGGCTGCTGTTCCCGACCCCAAGTCGGTTCCTGGCTACATTGCTCCTCAGGGTCAGCGCAAT
GGTGTTGACCTTGGTGATGAGAGCCTGAACAATCTGACCGAGGCCGAGAGTCTGAGCCAAGAAGA
GGACAAGCCTCAGTCTACTGAGCAGCCGCAGCCTTCTCAGGAGTCTGAACAGGCTCAGCCAACCG
CGGAGCCCCAGCCTACGGAAGAGCCTCAAAACGAGGGCCAACCTTCTGAATCCCAGTCTCAAGAG
CAAACTGCTGAACAACCCCAGCCTACGGAAGATGCTCAACCTACGCAGCCGACACAACAACCCCA
GCCCACGAACCAGCCTCAAAACCAATCTCAGGGTGGCTTGAGAGG
Right flanking sequence: Indices 57739 -- 58238
AACCGGGGAGGTCTTTTCGGCTGGCTTAACAACCTTTTTTAATGTGTGATGTAACTCAATTGATA
AAGTGAATGATTTTCAGACTCGTAGATTGCGTGAAAAGTCTGTCCCGTTGCTCGCTTCGAGTTGA
CCCCTTACTTCTCGTGTAGCATCATCCCAATTTGAATGCAGAACCACTACTTCTGGAGATTGCTT
TCGTGGCACAAAATCTACAAGATCTTGTCCACGATTGACTCTTGTTGTTCCCCTTAATTCTCGTA
GGCGGGTCCAATTTCAGTTCAGCTGCAAAACTTATCGGATAACGTTAAACCTCGGCCTCATGTCT
AGTGTCATGAGACTAAATGTCCGACGGCAGGGCTTTTCTACCTTCCCTCGTAGTTGCGCTCGAGG
CGGCCCTCAAGAATCTTATGAACCTTATTTCTCACTGTAATCGGATGACGCTTCCCTATTTTTGG
TAAATAAGTTACACAAAAACGCGTGCCTAGAATCGAGATACTCTA
Found at i:66396 original size:12 final size:12
Alignment explanation
Indices: 66379--66427 Score: 64
Period size: 12 Copynumber: 4.2 Consensus size: 12
66369 CCCTCGCAGG
*
66379 CCCTCCATTCCT
1 CCCTCCGTTCCT
66391 CCCTCCGTTCCT
1 CCCTCCGTTCCT
*
66403 -CCACCGTTCCT
1 CCCTCCGTTCCT
*
66414 CCCTCCGTCCCT
1 CCCTCCGTTCCT
66426 CC
1 CC
66428 TCCTCCCATC
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
11 10 0.31
12 22 0.69
ACGTcount: A:0.04, C:0.61, G:0.06, T:0.29
Consensus pattern (12 bp):
CCCTCCGTTCCT
Left flanking sequence: Indices 65879 -- 66378
AAAATAAAGCCACGGTAGTGTAAGCCACCGGCTTGGTTAGCGGTATCTAATTATAGTCTGGATTG
GGAGAACGGACATGGGTGTAGTAATTACTCCGTTCTTCGGATTTAAAAGTGGGTATCACCGTAAT
ATGAGTGGTAAACGGTGTGACAAGAAGCTTTTAATGGGCTCCCTTGAGCCTGGTCCTTCCCGAAC
TAGCCGCTCTCGCTCGTTAGGTGGCTTGTCACCGAATGATCATTGGTTGTCCAAGGATCGGCCCT
ATACACTACGACCCCACAGACTAAACCCTTGACGCATTTGTGGGCTGTTAAATCTAGGGATCACC
GTGTAACCTGGCTGAACCCTGTTCCTAACCCCAGCTCCCCGCCGTCGCACAGATGGTCGGGGTTT
GACAGACACTTTGAGAGAGTCTGAATAATAGAAGTCCCCGCTCGTTGCTTTTTACTATTGCTAAA
CCCCTCATCCCCTATTTCCGTTTCTCTTGCTTGTTCCCTCGCAGG
Right flanking sequence: Indices 66428 -- 66927
TCCTCCCATCACCTTATATACAGGACTCTCGCCACGCCACTATCGCAACAACGACCAAACCATCT
GGCTCTCAACCAACGGCATGAAACGCCTACCCCCGATGCTACGCTCACGGGTGCCTGTCCTCGCG
ACCAGGCTTGCCCACAAACAGGCCGACCCCGCATTCTTAGCTGAGGCACTCAACCTCCTCCTGAA
ACCCTCCTCCTCCGAGATCCACCCGCAACCTCCAGGAGCGGGCCAGTACAAGAACTACTTGCTGA
GCCTCGTGCTGCTGTTGCTGGCGCCCGCTGCGGACGCCGAGTTGCTTCTGCTACCCCCCAAGGAC
CTTTCCAAGTACGTGAAACGCGTCCGGGAAGAGCTGCGGCTCCGTCAGCTTATCGCCCTCCTCTC
CTCCCACGAGGTGCTCACTCCGCAGATCCTCACCGACATCGTGTTGAATCCCAGCCTACGCCACC
CTGAAACGGTCCCTGCACTACTAGACACCCGCAGCCACTTCGCAT
Found at i:68069 original size:11 final size:11
Alignment explanation
Indices: 68053--68078 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
68043 TGGGTTAATG
68053 GCGACTTGTTT
1 GCGACTTGTTT
68064 GCGACTTGTTT
1 GCGACTTGTTT
68075 GCGA
1 GCGA
68079 ACTACAAATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.12, C:0.19, G:0.31, T:0.38
Consensus pattern (11 bp):
GCGACTTGTTT
Left flanking sequence: Indices 67553 -- 68052
GAAGAAAATAAACGAGCCATTGCGCGATTGTGTTCCGTGGGTATGCCCGCAACGGGGGCCTGAAA
CAGCGTGGGAAGACAGAGGTAAAATTGGCGGAGGCCAGAATAGACGGCACGGCGTTTGCTACCCG
GACCTTCGCTGGTTTGGTTGCCAGGGACGCAGTGTGGCCAGCGGGCATGGGGCTGTTGCAGCCAG
CCACGAGGCAGTGCCAGGCCCCACCCTGGGCTCCCGTGTGCCCCCTGGCAACCGTTCTATTTCCA
GGTAGGGTTTCGCCGTGTGTCACGTTCACTTCCGCCCGCTGACAAATTGTATTATTGCGGAACAG
CTTGTCAGGTAACACTGGCGTGCCATTGATATTATCAGGTTTCATCGGGATATGGACGCGGTGGC
CCGCCGTAGAGTGCCCGTTTCTCAGGCACGGCTCTGCAAACTGCCTCCCCCGGTGTGCGTTGGAG
AACTCCGCTTAACTCCAGAAGCACCACTCCCACGATGGGTTAATG
Right flanking sequence: Indices 68079 -- 68578
ACTACAAATTCAGGGGGCTCGTTGGATGGTGTGCCCGGCGTTTGGGCCACCCCCGTAACGGCGTT
TGCCTCCGGCCACCGTTGTGAGCCTGTTCCCGTGATGTGTTGGCCCGGCAACAGATCTTGTCCAG
ATTCAGTATCGACCCACTTTGTCTTGGCAAGCACCGAAGTCACAGCATCAGGTCATCACCGCCTT
GGCTGCGGAAAAGTGTAACGCCCCATGCCGGCCATTGCCACGGGAATGTGTCAAACGTGGGATTG
CTACGGCAACCGTGGTAGAAAATACCTCAGTGACGCCATTGGTTAAGGAGGGTTTCCGTAAACGC
AGTGGCGGCACGGCAGACGAGGGAACGAAACCCACGAGTGTCGGGGGTTGATCTGCTTTGTTGGG
CTGCCCCGCACGCATATTTTGTCCGGGGTTTAGCTCGGGAATGGCGGTGGTTCCGGATAAACCCG
TCCATTGTCGACATTCTTGAGTGGGACATTCCACCCAGCTGCTCG
Found at i:72438 original size:21 final size:21
Alignment explanation
Indices: 72409--72448 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
72399 GTGCTTGTGT
* *
72409 CCTCGGTGGTTCTTGTGCTCG
1 CCTCCGTGGTGCTTGTGCTCG
*
72430 CCTCCGTGGTGGTTGTGCT
1 CCTCCGTGGTGCTTGTGCT
72449 AGGAGGGGGC
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.00, C:0.28, G:0.35, T:0.38
Consensus pattern (21 bp):
CCTCCGTGGTGCTTGTGCTCG
Left flanking sequence: Indices 71909 -- 72408
GACCAAGTGCACCACTGTGTCGGCACCTCCCAGTTCGCGCATCCACTCGGAGGAGGCGAGGAGGA
GGGCCCGCCCGAGGAGCACGTCGTTAAACACAAGCCACAACCCGTTGTAGAAGTTGATGTAGTTG
GAGTTGGCGACGTTGACGTTGCTGTTGAACACCGGGAGCTTCACCAGGAGCCAGCCCTTGTAGCA
CCCGAACTGGACGGGGAGGTTGGTGAGCTGGCTGAGGCGGAGGTCGAGCTGGCGCACAAGCGCCA
GGTGGCGTGCGAGGGGACGGAGCCGGTGGCGCACGGTGCTGGTGGCGTGCTGGAGGTGGTGCACC
GCGATCGCGAAACGTGAGGGAGGAGTGTGGAGTGGGGTGGAGGTGGTGGTCGCAGTGGTGGTGAT
GGTGAGGTTGGTAATGTTGGTATCAGTAGTGTTGGTGTCAATAGTGGTGTCTTTGCTTATCTCAG
TAGTGTTGGTGTCAATGCTTTCTTTGTTTGTCTCTGTGCTTGTGT
Right flanking sequence: Indices 72449 -- 72948
AGGAGGGGGCGAGGCCTGTGCAGAGTCGGAGGTGCTCCCGTCCGTGCTCTCACTCTCCTCCTCCC
CCCTCCGGGCCACCTCCCGGATCCGTTTCCGGGTCTCCAACGTCGTGTTCACCGCATCGAGCACC
GGTTCGTCCGCCAACAGCGTCACCAGCGGCGCCATCAGGGGCAACGCGGCGATCTTCGCCACGTC
GGGGCTCCGGGGCTCGAGTGCCCCCACCAGCTGGAGCAAGATGGGCAGGATCAGAAAATACTCAA
AGTTCTTGTAGTTGGGGGGCAGAAACACCACCACGAAGCACGGCAGTGAGCTCGGGAGATAGGGA
AACCGGTTCAAGAAGTCGTTGGTGAAGCGGAGCGGGCCCACGTCCAAGTTGATCAGCCCCACCAC
CTCGATGTGGGGCGGGAGCCGTGCCGGTGCGGTGTCGGTGCACTCGCACACCACCACGCACTCGG
CAAACGACTGGCCTAGGAGGTACCCGCGCTTGTTGTGGACAAGGT
Found at i:73906 original size:12 final size:12
Alignment explanation
Indices: 73885--73922 Score: 58
Period size: 12 Copynumber: 3.1 Consensus size: 12
73875 TTGGAGACGA
*
73885 GGGACAAACGCT
1 GGGACGAACGCT
73897 GGGACGAACGCT
1 GGGACGAACGCT
73909 GGGGACGAACGCT
1 -GGGACGAACGCT
73922 G
1 G
73923 ATTATGTTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
12 12 0.50
13 12 0.50
ACGTcount: A:0.26, C:0.24, G:0.42, T:0.08
Consensus pattern (12 bp):
GGGACGAACGCT
Left flanking sequence: Indices 73385 -- 73884
AGCATTCGACACGAGCATCGAGAAAGTGGTGAGATACTCTGGGCGAATGACTAAATGCGAGGATT
TCTTTTGCTCTGTCTGTGCTTCGGTCTTGGAGTGAGACATGGCGAAATGGAGAGATTCTCAGATT
CTGGAGATTCTGAAGAATTTGGAGAATTTGGAGAGATTTCTGGCAGTGGAAAATCTTAAAAGAAA
ATCGTAGGACCCTGAAAGACACGGAGATGACCACGGAGATGAGCGGGAGATCCAGATGCGCGGGA
CGTTGACGTAATCGGGTTTGTCGTCGTCCGCTTAAACCCTGCCCGACTCGGATCGAAAAGAAAGT
TTAGACAGCAATGACGTAGCGGGGCAAACCTTCTTTGATCGGGGTCTGCGCTGTAGCAGCAGTGA
CGACACATCTACACGACATCTAGACTGGTAGCCGGCAGCCAGCGGTGGTTCTGGACTGGCAGTGC
AAGCCGACGCGATCGCCCGGGCCCAACGTTTCAGGTTGGAGACGA
Right flanking sequence: Indices 73923 -- 74422
ATTATGTTTTAGCGCTAAGGCACTCTGTGGCCAAGACAGGGAGCTCAGGCGGCGGTTTGGGCTCG
TCTGACCAGTATGGGCTGTTTCTGGCGTCTCTGGCGCGGTATCTGCCGTTTAGGGGTCTGTTCCT
ACGTCCCAATAAGACAGAGATCTTTGTCAGCTGACGGTCAGGTGGTGGTCAGGTGGTGGGCTGCC
CAGGCTATTTTGGGCCCCAGTGCCCGGTGGTGGACGCAGAGCTAACTGCGGGCTAACTCCGGTTC
CGGCGGTGACGTCGAGGAGGCTTTGTTAAGGTTTCGTAGGTGCCCGCCTTAGTCGATACTCTAGG
GCATCTGGAGAATTAAGGTTCACGGGGAGCCGTCACAGGTTGCGCAGCGGAAAGAGGCTTGGTCT
ACTCCTGGTGGCTTGTGATAACGGGCCCAGGGGAGCCCGTATCGTACATGGCCAGATGAAATTGC
TATGGCCCGATGAATTGCTCGCAGTACATGGTCCTTCTGGACCCT
Found at i:73915 original size:13 final size:13
Alignment explanation
Indices: 73885--73922 Score: 60
Period size: 13 Copynumber: 3.0 Consensus size: 13
73875 TTGGAGACGA
*
73885 GGGACAAACGCT-
1 GGGACGAACGCTG
73897 GGGACGAACGCTG
1 GGGACGAACGCTG
73910 GGGACGAACGCTG
1 GGGACGAACGCTG
73923 ATTATGTTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
12 11 0.46
13 13 0.54
ACGTcount: A:0.26, C:0.24, G:0.42, T:0.08
Consensus pattern (13 bp):
GGGACGAACGCTG
Left flanking sequence: Indices 73385 -- 73884
AGCATTCGACACGAGCATCGAGAAAGTGGTGAGATACTCTGGGCGAATGACTAAATGCGAGGATT
TCTTTTGCTCTGTCTGTGCTTCGGTCTTGGAGTGAGACATGGCGAAATGGAGAGATTCTCAGATT
CTGGAGATTCTGAAGAATTTGGAGAATTTGGAGAGATTTCTGGCAGTGGAAAATCTTAAAAGAAA
ATCGTAGGACCCTGAAAGACACGGAGATGACCACGGAGATGAGCGGGAGATCCAGATGCGCGGGA
CGTTGACGTAATCGGGTTTGTCGTCGTCCGCTTAAACCCTGCCCGACTCGGATCGAAAAGAAAGT
TTAGACAGCAATGACGTAGCGGGGCAAACCTTCTTTGATCGGGGTCTGCGCTGTAGCAGCAGTGA
CGACACATCTACACGACATCTAGACTGGTAGCCGGCAGCCAGCGGTGGTTCTGGACTGGCAGTGC
AAGCCGACGCGATCGCCCGGGCCCAACGTTTCAGGTTGGAGACGA
Right flanking sequence: Indices 73923 -- 74422
ATTATGTTTTAGCGCTAAGGCACTCTGTGGCCAAGACAGGGAGCTCAGGCGGCGGTTTGGGCTCG
TCTGACCAGTATGGGCTGTTTCTGGCGTCTCTGGCGCGGTATCTGCCGTTTAGGGGTCTGTTCCT
ACGTCCCAATAAGACAGAGATCTTTGTCAGCTGACGGTCAGGTGGTGGTCAGGTGGTGGGCTGCC
CAGGCTATTTTGGGCCCCAGTGCCCGGTGGTGGACGCAGAGCTAACTGCGGGCTAACTCCGGTTC
CGGCGGTGACGTCGAGGAGGCTTTGTTAAGGTTTCGTAGGTGCCCGCCTTAGTCGATACTCTAGG
GCATCTGGAGAATTAAGGTTCACGGGGAGCCGTCACAGGTTGCGCAGCGGAAAGAGGCTTGGTCT
ACTCCTGGTGGCTTGTGATAACGGGCCCAGGGGAGCCCGTATCGTACATGGCCAGATGAAATTGC
TATGGCCCGATGAATTGCTCGCAGTACATGGTCCTTCTGGACCCT
Found at i:74395 original size:18 final size:19
Alignment explanation
Indices: 74360--74396 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
74350 CGTATCGTAC
74360 ATGGCCAGATGAAATTGCT
1 ATGGCCAGATGAAATTGCT
*
74379 ATGGCCCGATG-AATTGCT
1 ATGGCCAGATGAAATTGCT
74397 CGCAGTACAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 7 0.41
19 10 0.59
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (19 bp):
ATGGCCAGATGAAATTGCT
Left flanking sequence: Indices 73860 -- 74359
GCCCAACGTTTCAGGTTGGAGACGAGGGACAAACGCTGGGACGAACGCTGGGGACGAACGCTGAT
TATGTTTTAGCGCTAAGGCACTCTGTGGCCAAGACAGGGAGCTCAGGCGGCGGTTTGGGCTCGTC
TGACCAGTATGGGCTGTTTCTGGCGTCTCTGGCGCGGTATCTGCCGTTTAGGGGTCTGTTCCTAC
GTCCCAATAAGACAGAGATCTTTGTCAGCTGACGGTCAGGTGGTGGTCAGGTGGTGGGCTGCCCA
GGCTATTTTGGGCCCCAGTGCCCGGTGGTGGACGCAGAGCTAACTGCGGGCTAACTCCGGTTCCG
GCGGTGACGTCGAGGAGGCTTTGTTAAGGTTTCGTAGGTGCCCGCCTTAGTCGATACTCTAGGGC
ATCTGGAGAATTAAGGTTCACGGGGAGCCGTCACAGGTTGCGCAGCGGAAAGAGGCTTGGTCTAC
TCCTGGTGGCTTGTGATAACGGGCCCAGGGGAGCCCGTATCGTAC
Right flanking sequence: Indices 74397 -- 74896
CGCAGTACATGGTCCTTCTGGACCCTAGGCCGTGCATGGTAGGCTGTTCACGCTGGGTTCACGCT
ACTGGGGCTGGGAGGGTGTGTTCGTGTGGTGACGGGCGTCAGGTGTCTTGGCTGTGACCCCGCGG
GCCCGCTGCAGCCACTTCGCTAGCCGTCCTTCCTGGGCTTCTCTGCTTATTCCTCGCATAATTAC
TAATTGTACACCGGAGGGCTGCCGGCCTGAAACAGCATCGAATTTTCGCTGCTGCTACCGGTTGT
GGTAGTGTTTTTCGTCACCGGTGGTGCATGGACGGGTCCATGGTACAAAGAACCCGTCGTGGGCC
CCACGGTGGCCGCCCCAGTGGCGGCGACCTCGTTTTGCGTCGATACGCCGTCGTATTTCGTCGCC
CAGATTTGTGTCAGCTGACGGGGTGGCGGTGGTGGTGGAGCCGGGCGGGGATCAGCGTTGACACT
GGGTAAAAGCAATAATTACCAGATGGTTTGTGCCCGGTGAGGTCA
Found at i:76699 original size:32 final size:33
Alignment explanation
Indices: 76663--76728 Score: 107
Period size: 33 Copynumber: 2.0 Consensus size: 33
76653 AAATGCCGGT
*
76663 GAAGCAATAAAATGG-GACTTAATTGGGGGTTG
1 GAAGCAATAAAATGGAGACTTAATTGAGGGTTG
*
76695 GAAGCAATAAAATGGAGACTTGATTGAGGGTTG
1 GAAGCAATAAAATGGAGACTTAATTGAGGGTTG
76728 G
1 G
76729 TTTAGTAACC
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 15 0.48
33 16 0.52
ACGTcount: A:0.35, C:0.06, G:0.35, T:0.24
Consensus pattern (33 bp):
GAAGCAATAAAATGGAGACTTAATTGAGGGTTG
Left flanking sequence: Indices 76163 -- 76662
CCACAATGGCTCGTTCGACATGGGCCAGTACCCCGACATGACCAGTCTTGTCAACCTGAACCACA
ACATCGTCGTCCCCATGGTGGAGCTGACGTTTGTCGACCACAAGGTGTGCAATGTGTGTGGCAAG
CGCATCACCCGAGATATGCTGCGGCATATGCGGACCCACCAGGCCGAGCTGCGGTTCTCGTGCAA
GTTCCCCAAGAACCAGTGCCGTCACAAGCTGGGCAAGTTCAACCGGCCCTACGACTTCAAGAAGC
ACCTTTTGAACCGCCACTTCAAGTTCGACAACTTGCTGGTCAAGCGGTTGCACAACTTGTCGGAC
AAATTGAACCACTGGGGCACCTGTCCCTGTGGGTTACGGTTCATGGGAAAGGACTGGCTCAATAA
GCACATTTTGACTGACGACACTCTGGCTAAATGCCCCTTTATAGAATAGAGTCTAATGAATGACG
ACAGGGATAGGATATGGTATAATGTTTGTTTTAATAAATGCCGGT
Right flanking sequence: Indices 76729 -- 77228
TTTAGTAACCATTGCTTAATTAATTTTAATTTTACCTTCGTTTTTGCTGTGTTTTACCGTCTATC
CCGTCCCTTTTACGTCTCTATTCTGTCCTTTTTAGCTTCTCTACCGTCCTTTGTAGCTTCTCTAA
CGTCCTTTTTACCGTCCCTACCGTACCTATCGTCCCTTTTACCGTCCTTTTATCGTCCTTTTACC
GTTCTTATCCCGTCCCTTATTCATTGTTTCCACACAATTGGATCTTTTTTTTGTTTTTTGTTTGC
ATTCAGTGCCCGCTTTGTTTGATTCATTATTCAATTGTACATTGTCACCGTTTCATTTTTCGTCT
CTGTTTCATTTTTTGATCCGTGTATCTGCATTCACTGGTTCCGTAATTTCCCAAATTTTGACCAC
CTCTCGTTCCGTCTAACTCCTCTCATCCCGTCTAATTACCTCTCCTCCGTCTAATTACCCTCCGT
CTAATTACATTGACTCTGGTCTATCCATTGACCCATTCCCTCGAA
Found at i:76827 original size:43 final size:42
Alignment explanation
Indices: 76780--76874 Score: 95
Period size: 42 Copynumber: 2.2 Consensus size: 42
76770 TTTTGCTGTG
* *
76780 TTTTACCGTCTATCCCGTCCCTTT-TA-CGTCTCTATTCTGTCCT
1 TTTTACCGTCTATACCGT-CCTTTGTAGCGTCTCTA-AC-GTCCT
* * * *
76823 TTTTAGCTTCTCTACCGTCCTTTGTAGCTTCTCTAACGTCCT
1 TTTTACCGTCTATACCGTCCTTTGTAGCGTCTCTAACGTCCT
76865 TTTTACCGTC
1 TTTTACCGTC
76875 CCTACCGTAC
Statistics
Matches: 42, Mismatches: 8, Indels: 5
0.76 0.15 0.09
Matches are distributed among these distances:
42 18 0.43
43 17 0.40
44 7 0.17
ACGTcount: A:0.11, C:0.33, G:0.11, T:0.46
Consensus pattern (42 bp):
TTTTACCGTCTATACCGTCCTTTGTAGCGTCTCTAACGTCCT
Left flanking sequence: Indices 76280 -- 76779
TGTGTGTGGCAAGCGCATCACCCGAGATATGCTGCGGCATATGCGGACCCACCAGGCCGAGCTGC
GGTTCTCGTGCAAGTTCCCCAAGAACCAGTGCCGTCACAAGCTGGGCAAGTTCAACCGGCCCTAC
GACTTCAAGAAGCACCTTTTGAACCGCCACTTCAAGTTCGACAACTTGCTGGTCAAGCGGTTGCA
CAACTTGTCGGACAAATTGAACCACTGGGGCACCTGTCCCTGTGGGTTACGGTTCATGGGAAAGG
ACTGGCTCAATAAGCACATTTTGACTGACGACACTCTGGCTAAATGCCCCTTTATAGAATAGAGT
CTAATGAATGACGACAGGGATAGGATATGGTATAATGTTTGTTTTAATAAATGCCGGTGAAGCAA
TAAAATGGGACTTAATTGGGGGTTGGAAGCAATAAAATGGAGACTTGATTGAGGGTTGGTTTAGT
AACCATTGCTTAATTAATTTTAATTTTACCTTCGTTTTTGCTGTG
Right flanking sequence: Indices 76875 -- 77374
CCTACCGTACCTATCGTCCCTTTTACCGTCCTTTTATCGTCCTTTTACCGTTCTTATCCCGTCCC
TTATTCATTGTTTCCACACAATTGGATCTTTTTTTTGTTTTTTGTTTGCATTCAGTGCCCGCTTT
GTTTGATTCATTATTCAATTGTACATTGTCACCGTTTCATTTTTCGTCTCTGTTTCATTTTTTGA
TCCGTGTATCTGCATTCACTGGTTCCGTAATTTCCCAAATTTTGACCACCTCTCGTTCCGTCTAA
CTCCTCTCATCCCGTCTAATTACCTCTCCTCCGTCTAATTACCCTCCGTCTAATTACATTGACTC
TGGTCTATCCATTGACCCATTCCCTCGAACCCGCTTCTTTATCCCTGCTGATCCTTCATGTAGTC
TTTTATTCACCCTCTTTTCTTCACCTTCTCTCCCCATTCCGGCGCAAATGCCCTTCGAAAAATCG
TCTCCGCCCGTGGCCACTCAGCGTTCTCTGATTACACTTCCGCTT
Found at i:76842 original size:21 final size:21
Alignment explanation
Indices: 76818--76869 Score: 86
Period size: 21 Copynumber: 2.5 Consensus size: 21
76808 TCTCTATTCT
*
76818 GTCCTTTTTAGCTTCTCTACC
1 GTCCTTTTTAGCTTCTCTAAC
*
76839 GTCCTTTGTAGCTTCTCTAAC
1 GTCCTTTTTAGCTTCTCTAAC
76860 GTCCTTTTTA
1 GTCCTTTTTA
76870 CCGTCCCTAC
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.12, C:0.29, G:0.12, T:0.48
Consensus pattern (21 bp):
GTCCTTTTTAGCTTCTCTAAC
Left flanking sequence: Indices 76318 -- 76817
ATATGCGGACCCACCAGGCCGAGCTGCGGTTCTCGTGCAAGTTCCCCAAGAACCAGTGCCGTCAC
AAGCTGGGCAAGTTCAACCGGCCCTACGACTTCAAGAAGCACCTTTTGAACCGCCACTTCAAGTT
CGACAACTTGCTGGTCAAGCGGTTGCACAACTTGTCGGACAAATTGAACCACTGGGGCACCTGTC
CCTGTGGGTTACGGTTCATGGGAAAGGACTGGCTCAATAAGCACATTTTGACTGACGACACTCTG
GCTAAATGCCCCTTTATAGAATAGAGTCTAATGAATGACGACAGGGATAGGATATGGTATAATGT
TTGTTTTAATAAATGCCGGTGAAGCAATAAAATGGGACTTAATTGGGGGTTGGAAGCAATAAAAT
GGAGACTTGATTGAGGGTTGGTTTAGTAACCATTGCTTAATTAATTTTAATTTTACCTTCGTTTT
TGCTGTGTTTTACCGTCTATCCCGTCCCTTTTACGTCTCTATTCT
Right flanking sequence: Indices 76870 -- 77369
CCGTCCCTACCGTACCTATCGTCCCTTTTACCGTCCTTTTATCGTCCTTTTACCGTTCTTATCCC
GTCCCTTATTCATTGTTTCCACACAATTGGATCTTTTTTTTGTTTTTTGTTTGCATTCAGTGCCC
GCTTTGTTTGATTCATTATTCAATTGTACATTGTCACCGTTTCATTTTTCGTCTCTGTTTCATTT
TTTGATCCGTGTATCTGCATTCACTGGTTCCGTAATTTCCCAAATTTTGACCACCTCTCGTTCCG
TCTAACTCCTCTCATCCCGTCTAATTACCTCTCCTCCGTCTAATTACCCTCCGTCTAATTACATT
GACTCTGGTCTATCCATTGACCCATTCCCTCGAACCCGCTTCTTTATCCCTGCTGATCCTTCATG
TAGTCTTTTATTCACCCTCTTTTCTTCACCTTCTCTCCCCATTCCGGCGCAAATGCCCTTCGAAA
AATCGTCTCCGCCCGTGGCCACTCAGCGTTCTCTGATTACACTTC
Found at i:76909 original size:11 final size:11
Alignment explanation
Indices: 76893--76925 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
76883 ACCTATCGTC
76893 CCTTTTACCGT
1 CCTTTTACCGT
*
76904 CCTTTTATCGT
1 CCTTTTACCGT
76915 CCTTTTACCGT
1 CCTTTTACCGT
76926 TCTTATCCCG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.09, C:0.33, G:0.09, T:0.48
Consensus pattern (11 bp):
CCTTTTACCGT
Left flanking sequence: Indices 76393 -- 76892
AGTTCAACCGGCCCTACGACTTCAAGAAGCACCTTTTGAACCGCCACTTCAAGTTCGACAACTTG
CTGGTCAAGCGGTTGCACAACTTGTCGGACAAATTGAACCACTGGGGCACCTGTCCCTGTGGGTT
ACGGTTCATGGGAAAGGACTGGCTCAATAAGCACATTTTGACTGACGACACTCTGGCTAAATGCC
CCTTTATAGAATAGAGTCTAATGAATGACGACAGGGATAGGATATGGTATAATGTTTGTTTTAAT
AAATGCCGGTGAAGCAATAAAATGGGACTTAATTGGGGGTTGGAAGCAATAAAATGGAGACTTGA
TTGAGGGTTGGTTTAGTAACCATTGCTTAATTAATTTTAATTTTACCTTCGTTTTTGCTGTGTTT
TACCGTCTATCCCGTCCCTTTTACGTCTCTATTCTGTCCTTTTTAGCTTCTCTACCGTCCTTTGT
AGCTTCTCTAACGTCCTTTTTACCGTCCCTACCGTACCTATCGTC
Right flanking sequence: Indices 76926 -- 77425
TCTTATCCCGTCCCTTATTCATTGTTTCCACACAATTGGATCTTTTTTTTGTTTTTTGTTTGCAT
TCAGTGCCCGCTTTGTTTGATTCATTATTCAATTGTACATTGTCACCGTTTCATTTTTCGTCTCT
GTTTCATTTTTTGATCCGTGTATCTGCATTCACTGGTTCCGTAATTTCCCAAATTTTGACCACCT
CTCGTTCCGTCTAACTCCTCTCATCCCGTCTAATTACCTCTCCTCCGTCTAATTACCCTCCGTCT
AATTACATTGACTCTGGTCTATCCATTGACCCATTCCCTCGAACCCGCTTCTTTATCCCTGCTGA
TCCTTCATGTAGTCTTTTATTCACCCTCTTTTCTTCACCTTCTCTCCCCATTCCGGCGCAAATGC
CCTTCGAAAAATCGTCTCCGCCCGTGGCCACTCAGCGTTCTCTGATTACACTTCCGCTTTGTTGA
TGCTTCGGTGGGGTGCCGGTCTTTGTTACCAGTAATAATTTTCAC
Found at i:76937 original size:22 final size:22
Alignment explanation
Indices: 76893--76938 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 22
76883 ACCTATCGTC
* *
76893 CCTTTTACCGTCCTTTTATCGT
1 CCTTTTACCGTCCTTATACCGT
* *
76915 CCTTTTACCGTTCTTATCCCGT
1 CCTTTTACCGTCCTTATACCGT
76937 CC
1 CC
76939 CTTATTCATT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.09, C:0.37, G:0.09, T:0.46
Consensus pattern (22 bp):
CCTTTTACCGTCCTTATACCGT
Left flanking sequence: Indices 76393 -- 76892
AGTTCAACCGGCCCTACGACTTCAAGAAGCACCTTTTGAACCGCCACTTCAAGTTCGACAACTTG
CTGGTCAAGCGGTTGCACAACTTGTCGGACAAATTGAACCACTGGGGCACCTGTCCCTGTGGGTT
ACGGTTCATGGGAAAGGACTGGCTCAATAAGCACATTTTGACTGACGACACTCTGGCTAAATGCC
CCTTTATAGAATAGAGTCTAATGAATGACGACAGGGATAGGATATGGTATAATGTTTGTTTTAAT
AAATGCCGGTGAAGCAATAAAATGGGACTTAATTGGGGGTTGGAAGCAATAAAATGGAGACTTGA
TTGAGGGTTGGTTTAGTAACCATTGCTTAATTAATTTTAATTTTACCTTCGTTTTTGCTGTGTTT
TACCGTCTATCCCGTCCCTTTTACGTCTCTATTCTGTCCTTTTTAGCTTCTCTACCGTCCTTTGT
AGCTTCTCTAACGTCCTTTTTACCGTCCCTACCGTACCTATCGTC
Right flanking sequence: Indices 76939 -- 77438
CTTATTCATTGTTTCCACACAATTGGATCTTTTTTTTGTTTTTTGTTTGCATTCAGTGCCCGCTT
TGTTTGATTCATTATTCAATTGTACATTGTCACCGTTTCATTTTTCGTCTCTGTTTCATTTTTTG
ATCCGTGTATCTGCATTCACTGGTTCCGTAATTTCCCAAATTTTGACCACCTCTCGTTCCGTCTA
ACTCCTCTCATCCCGTCTAATTACCTCTCCTCCGTCTAATTACCCTCCGTCTAATTACATTGACT
CTGGTCTATCCATTGACCCATTCCCTCGAACCCGCTTCTTTATCCCTGCTGATCCTTCATGTAGT
CTTTTATTCACCCTCTTTTCTTCACCTTCTCTCCCCATTCCGGCGCAAATGCCCTTCGAAAAATC
GTCTCCGCCCGTGGCCACTCAGCGTTCTCTGATTACACTTCCGCTTTGTTGATGCTTCGGTGGGG
TGCCGGTCTTTGTTACCAGTAATAATTTTCACTAATAATTTTTCA
Found at i:77142 original size:19 final size:19
Alignment explanation
Indices: 77117--77177 Score: 61
Period size: 19 Copynumber: 3.2 Consensus size: 19
77107 AATTTTGACC
77117 ACCTCTCGTTCCGTCTAACT
1 ACCTCTC-TTCCGTCTAACT
* *
77137 -CCTCTCATCCCGTCTAATT
1 ACCTCTC-TTCCGTCTAACT
* *
77156 ACCTCTCCTCCGTCTAATT
1 ACCTCTCTTCCGTCTAACT
77175 ACC
1 ACC
77178 CTCCGTCTAA
Statistics
Matches: 35, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
19 29 0.83
20 6 0.17
ACGTcount: A:0.16, C:0.43, G:0.07, T:0.34
Consensus pattern (19 bp):
ACCTCTCTTCCGTCTAACT
Left flanking sequence: Indices 76617 -- 77116
GACAGGGATAGGATATGGTATAATGTTTGTTTTAATAAATGCCGGTGAAGCAATAAAATGGGACT
TAATTGGGGGTTGGAAGCAATAAAATGGAGACTTGATTGAGGGTTGGTTTAGTAACCATTGCTTA
ATTAATTTTAATTTTACCTTCGTTTTTGCTGTGTTTTACCGTCTATCCCGTCCCTTTTACGTCTC
TATTCTGTCCTTTTTAGCTTCTCTACCGTCCTTTGTAGCTTCTCTAACGTCCTTTTTACCGTCCC
TACCGTACCTATCGTCCCTTTTACCGTCCTTTTATCGTCCTTTTACCGTTCTTATCCCGTCCCTT
ATTCATTGTTTCCACACAATTGGATCTTTTTTTTGTTTTTTGTTTGCATTCAGTGCCCGCTTTGT
TTGATTCATTATTCAATTGTACATTGTCACCGTTTCATTTTTCGTCTCTGTTTCATTTTTTGATC
CGTGTATCTGCATTCACTGGTTCCGTAATTTCCCAAATTTTGACC
Right flanking sequence: Indices 77178 -- 77677
CTCCGTCTAATTACATTGACTCTGGTCTATCCATTGACCCATTCCCTCGAACCCGCTTCTTTATC
CCTGCTGATCCTTCATGTAGTCTTTTATTCACCCTCTTTTCTTCACCTTCTCTCCCCATTCCGGC
GCAAATGCCCTTCGAAAAATCGTCTCCGCCCGTGGCCACTCAGCGTTCTCTGATTACACTTCCGC
TTTGTTGATGCTTCGGTGGGGTGCCGGTCTTTGTTACCAGTAATAATTTTCACTAATAATTTTTC
AGCCCCGCTCAATATTATCGGTGGCTCGGTGCCGTGCCAGCGGGCTCGTAGACTCCCGTTTGGCT
TTCTGTGGCTCCCCAACCATTTCCCCATTGGTCCTGCGTCGTTCCACGTCCTTTCGGTTTCCCTT
TTCGTCTGCGTTTCTTTACCGCTTTATTACCCCTTTTCGGAACGAGACCCACCGGTCTTCCGGGC
CCGGGCATGTGGTTAATTCTTTTCTTTTCACCGCAGCGAGGGGCC
Found at i:77182 original size:15 final size:15
Alignment explanation
Indices: 77162--77191 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
77152 AATTACCTCT
77162 CCTCCGTCTAATTAC
1 CCTCCGTCTAATTAC
77177 CCTCCGTCTAATTAC
1 CCTCCGTCTAATTAC
77192 ATTGACTCTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.20, C:0.40, G:0.07, T:0.33
Consensus pattern (15 bp):
CCTCCGTCTAATTAC
Left flanking sequence: Indices 76662 -- 77161
TGAAGCAATAAAATGGGACTTAATTGGGGGTTGGAAGCAATAAAATGGAGACTTGATTGAGGGTT
GGTTTAGTAACCATTGCTTAATTAATTTTAATTTTACCTTCGTTTTTGCTGTGTTTTACCGTCTA
TCCCGTCCCTTTTACGTCTCTATTCTGTCCTTTTTAGCTTCTCTACCGTCCTTTGTAGCTTCTCT
AACGTCCTTTTTACCGTCCCTACCGTACCTATCGTCCCTTTTACCGTCCTTTTATCGTCCTTTTA
CCGTTCTTATCCCGTCCCTTATTCATTGTTTCCACACAATTGGATCTTTTTTTTGTTTTTTGTTT
GCATTCAGTGCCCGCTTTGTTTGATTCATTATTCAATTGTACATTGTCACCGTTTCATTTTTCGT
CTCTGTTTCATTTTTTGATCCGTGTATCTGCATTCACTGGTTCCGTAATTTCCCAAATTTTGACC
ACCTCTCGTTCCGTCTAACTCCTCTCATCCCGTCTAATTACCTCT
Right flanking sequence: Indices 77192 -- 77691
ATTGACTCTGGTCTATCCATTGACCCATTCCCTCGAACCCGCTTCTTTATCCCTGCTGATCCTTC
ATGTAGTCTTTTATTCACCCTCTTTTCTTCACCTTCTCTCCCCATTCCGGCGCAAATGCCCTTCG
AAAAATCGTCTCCGCCCGTGGCCACTCAGCGTTCTCTGATTACACTTCCGCTTTGTTGATGCTTC
GGTGGGGTGCCGGTCTTTGTTACCAGTAATAATTTTCACTAATAATTTTTCAGCCCCGCTCAATA
TTATCGGTGGCTCGGTGCCGTGCCAGCGGGCTCGTAGACTCCCGTTTGGCTTTCTGTGGCTCCCC
AACCATTTCCCCATTGGTCCTGCGTCGTTCCACGTCCTTTCGGTTTCCCTTTTCGTCTGCGTTTC
TTTACCGCTTTATTACCCCTTTTCGGAACGAGACCCACCGGTCTTCCGGGCCCGGGCATGTGGTT
AATTCTTTTCTTTTCACCGCAGCGAGGGGCCATGACTCCCATTGA
Found at i:78453 original size:11 final size:11
Alignment explanation
Indices: 78437--78467 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
78427 TGGAGGAGAC
78437 GCTTAGTCACG
1 GCTTAGTCACG
*
78448 GCTTAGTCACT
1 GCTTAGTCACG
78459 GCTTAGTCA
1 GCTTAGTCA
78468 GGGAAGTAGT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.19, C:0.26, G:0.23, T:0.32
Consensus pattern (11 bp):
GCTTAGTCACG
Left flanking sequence: Indices 77937 -- 78436
GTTGTGGTGGTTGTGGTGGATTCCCGCGTGGTTGCTCGCTTGGTTGCTGCTGGCTCCCGCCTTTC
GATCTCTGGGCCATTCTTTGCCCAGATGCCACCGTTGGCGCCGATCGTTTCAGACCACTTCTGAA
ACCGATTCTCAAACACCTTCGCCTACCCCTGTCGCTTATTGTTTGTAACCCTGACAATCCCCCAG
AGACACAGAAGCACGGGCCCGCCCCAAAGCCAAATAGGTAGCGACGCGTAGCAATGTGGCGAGTG
CCATTGTTGTCGCGGGGGCTAATGGGACACAAACGGCGTTTACTACCCATTGGGAGGGCGTTCGG
AGGACCGTCGGTGTCGGATGGCGTGGGCATTAAGGTTGTACGAGGTACGAGGGTTGCTCTCGTGG
ACCTGCCCGGGGCGTTGGACGCACTTCAGCCCCGTGGCTGGGTTCGATCTGAAGTGCAGGGAGAG
AAGGGGCTAGCGGTGGGAGAGGTGGTGGTGGAGGGTGGAGGAGAC
Right flanking sequence: Indices 78468 -- 78967
GGGAAGTAGTAGGTTGAGACGATAGAGGTGGGTTTGGAGGGGAAGACGCAGGGTAGTGGCTTGGC
TGGCAAGGGCATGTCGGGTGTACCGGGTGGTGGATGCGGATAGTGGTAGCGAGAAGAGCTTGGAG
GTGTTTTTTGGGTTCCTTAGGTGTCCTGGTCAATTTTGTGGGTCAACCTTTAGGGTATTCTATGG
TTATGAACGTGGTTGTGATACTGTGGTTATGAACGTGGTGATAGTACTGTGGTTATGAACTCGGA
CGTGATACTCTGGGTGTCTCTCAAAAGGGTAAGCCAATTGCTATTTAAGAGGTGGTCACTGGTTC
CCCTCGTTGCTGTTCGTCGTAGCAAATGTCCTCTGTTCCTTTCCACAGTCTTCTTCCATTTTTTC
CATTTTCTTCCACCCTCTGAAACCTCTCTTCCACCATCTTAAACCTTTCTTCTACCATCTTCCAC
CTTTTCCACCACTCTCCTATTATTTTGGTCATGTTCCAGTACACC
Found at i:78696 original size:26 final size:26
Alignment explanation
Indices: 78660--78722 Score: 94
Period size: 26 Copynumber: 2.4 Consensus size: 26
78650 GGGTATTCTA
78660 TGGTTATGAACGTGGTTG-T-GATACTG
1 TGGTTATGAACGTGG-TGATAG-TACTG
78686 TGGTTATGAACGTGGTGATAGTACTG
1 TGGTTATGAACGTGGTGATAGTACTG
78712 TGGTTATGAAC
1 TGGTTATGAAC
78723 TCGGACGTGA
Statistics
Matches: 35, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
25 2 0.06
26 32 0.91
27 1 0.03
ACGTcount: A:0.22, C:0.08, G:0.33, T:0.37
Consensus pattern (26 bp):
TGGTTATGAACGTGGTGATAGTACTG
Left flanking sequence: Indices 78160 -- 78659
GCCAAATAGGTAGCGACGCGTAGCAATGTGGCGAGTGCCATTGTTGTCGCGGGGGCTAATGGGAC
ACAAACGGCGTTTACTACCCATTGGGAGGGCGTTCGGAGGACCGTCGGTGTCGGATGGCGTGGGC
ATTAAGGTTGTACGAGGTACGAGGGTTGCTCTCGTGGACCTGCCCGGGGCGTTGGACGCACTTCA
GCCCCGTGGCTGGGTTCGATCTGAAGTGCAGGGAGAGAAGGGGCTAGCGGTGGGAGAGGTGGTGG
TGGAGGGTGGAGGAGACGCTTAGTCACGGCTTAGTCACTGCTTAGTCAGGGAAGTAGTAGGTTGA
GACGATAGAGGTGGGTTTGGAGGGGAAGACGCAGGGTAGTGGCTTGGCTGGCAAGGGCATGTCGG
GTGTACCGGGTGGTGGATGCGGATAGTGGTAGCGAGAAGAGCTTGGAGGTGTTTTTTGGGTTCCT
TAGGTGTCCTGGTCAATTTTGTGGGTCAACCTTTAGGGTATTCTA
Right flanking sequence: Indices 78723 -- 79222
TCGGACGTGATACTCTGGGTGTCTCTCAAAAGGGTAAGCCAATTGCTATTTAAGAGGTGGTCACT
GGTTCCCCTCGTTGCTGTTCGTCGTAGCAAATGTCCTCTGTTCCTTTCCACAGTCTTCTTCCATT
TTTTCCATTTTCTTCCACCCTCTGAAACCTCTCTTCCACCATCTTAAACCTTTCTTCTACCATCT
TCCACCTTTTCCACCACTCTCCTATTATTTTGGTCATGTTCCAGTACACCCACGCGTCTTCTATC
CTCCCCACTCTTTATCTATACGACCTATCACCTGTTCCGTCTCTCCCCACCCTTCTCCCTATCTC
CCACCGTCTACCTGTCCTTTTCTCACCCCACACCACGCCACGAGCTGACCACCTACACCACGTCA
ACTGTCACCAACACTCCGAAGAAATAATCACTCACAATAAACTACACTAACATAAACTACCCCAA
CAAACGAACAAACCAAGACACCAGCACACTAACCACCTAACCACA
Found at i:78926 original size:21 final size:21
Alignment explanation
Indices: 78861--78918 Score: 80
Period size: 21 Copynumber: 2.8 Consensus size: 21
78851 TTTTTTCCAT
* *
78861 TTTCTTCCACCCTCTGAAACC
1 TTTCTTCCACCATCTTAAACC
*
78882 TCTCTTCCACCATCTTAAACC
1 TTTCTTCCACCATCTTAAACC
*
78903 TTTCTTCTACCATCTT
1 TTTCTTCCACCATCTT
78919 CCACCTTTTC
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 32 1.00
ACGTcount: A:0.19, C:0.40, G:0.02, T:0.40
Consensus pattern (21 bp):
TTTCTTCCACCATCTTAAACC
Left flanking sequence: Indices 78361 -- 78860
TGGCTGGGTTCGATCTGAAGTGCAGGGAGAGAAGGGGCTAGCGGTGGGAGAGGTGGTGGTGGAGG
GTGGAGGAGACGCTTAGTCACGGCTTAGTCACTGCTTAGTCAGGGAAGTAGTAGGTTGAGACGAT
AGAGGTGGGTTTGGAGGGGAAGACGCAGGGTAGTGGCTTGGCTGGCAAGGGCATGTCGGGTGTAC
CGGGTGGTGGATGCGGATAGTGGTAGCGAGAAGAGCTTGGAGGTGTTTTTTGGGTTCCTTAGGTG
TCCTGGTCAATTTTGTGGGTCAACCTTTAGGGTATTCTATGGTTATGAACGTGGTTGTGATACTG
TGGTTATGAACGTGGTGATAGTACTGTGGTTATGAACTCGGACGTGATACTCTGGGTGTCTCTCA
AAAGGGTAAGCCAATTGCTATTTAAGAGGTGGTCACTGGTTCCCCTCGTTGCTGTTCGTCGTAGC
AAATGTCCTCTGTTCCTTTCCACAGTCTTCTTCCATTTTTTCCAT
Right flanking sequence: Indices 78919 -- 79418
CCACCTTTTCCACCACTCTCCTATTATTTTGGTCATGTTCCAGTACACCCACGCGTCTTCTATCC
TCCCCACTCTTTATCTATACGACCTATCACCTGTTCCGTCTCTCCCCACCCTTCTCCCTATCTCC
CACCGTCTACCTGTCCTTTTCTCACCCCACACCACGCCACGAGCTGACCACCTACACCACGTCAA
CTGTCACCAACACTCCGAAGAAATAATCACTCACAATAAACTACACTAACATAAACTACCCCAAC
AAACGAACAAACCAAGACACCAGCACACTAACCACCTAACCACACAACTAACTAACCACACAACT
AATCAACCACACAATTAACTAACCACCCTACATCTCAACAAACCCCAAACACCCCATCTACTTCA
ACTCCCTCCCCTCCCCACCTCTACCACCACCCACCGATGTTACATTTTGTCCGCCGGACATGCAT
CGTTTCCACGCCCCTGACATCCATCACGTCACCACACCTCAAACA
Found at i:79235 original size:16 final size:16
Alignment explanation
Indices: 79214--79269 Score: 87
Period size: 16 Copynumber: 3.5 Consensus size: 16
79204 CACTAACCAC
79214 CTAACCACACAACTAA
1 CTAACCACACAACTAA
79230 CTAACCACACAACTAA
1 CTAACCACACAACTAA
*
79246 -TCAACCACACAATTAA
1 CT-AACCACACAACTAA
79262 CTAACCAC
1 CTAACCAC
79270 CCTACATCTC
Statistics
Matches: 37, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
15 1 0.03
16 35 0.95
17 1 0.03
ACGTcount: A:0.48, C:0.38, G:0.00, T:0.14
Consensus pattern (16 bp):
CTAACCACACAACTAA
Left flanking sequence: Indices 78714 -- 79213
GTTATGAACTCGGACGTGATACTCTGGGTGTCTCTCAAAAGGGTAAGCCAATTGCTATTTAAGAG
GTGGTCACTGGTTCCCCTCGTTGCTGTTCGTCGTAGCAAATGTCCTCTGTTCCTTTCCACAGTCT
TCTTCCATTTTTTCCATTTTCTTCCACCCTCTGAAACCTCTCTTCCACCATCTTAAACCTTTCTT
CTACCATCTTCCACCTTTTCCACCACTCTCCTATTATTTTGGTCATGTTCCAGTACACCCACGCG
TCTTCTATCCTCCCCACTCTTTATCTATACGACCTATCACCTGTTCCGTCTCTCCCCACCCTTCT
CCCTATCTCCCACCGTCTACCTGTCCTTTTCTCACCCCACACCACGCCACGAGCTGACCACCTAC
ACCACGTCAACTGTCACCAACACTCCGAAGAAATAATCACTCACAATAAACTACACTAACATAAA
CTACCCCAACAAACGAACAAACCAAGACACCAGCACACTAACCAC
Right flanking sequence: Indices 79270 -- 79769
CCTACATCTCAACAAACCCCAAACACCCCATCTACTTCAACTCCCTCCCCTCCCCACCTCTACCA
CCACCCACCGATGTTACATTTTGTCCGCCGGACATGCATCGTTTCCACGCCCCTGACATCCATCA
CGTCACCACACCTCAAACAATACCCGCGCACCGGTGACACTCCGGCACTCCTCCTCCCTCAGAGG
CACCGAAGCACAAAAAAAGTACGCTCGGTGAGACACCCGAGCCGCCTAAACACGCCCACACGTAG
AACAACCCCCTGCAACGGGAAAAGAAACCCACCACGGCCTAAACAGCCCTACCCTCTACACGCCC
ACCACCCCAAACACCCGTCCGGGTACCTTCCGCGCCACCAGCGCCCGTAGCAATTCCCGCACCTC
GCCCGCTTCCGATCGCTGCCGCCGCAATCTCTCACATGATGGCAGGACACCCGGCCTGCACACAG
CCCGTCCGGGACACGACTTGCAAAACCTCAAGGTTTGTTACTCAG
Found at i:81823 original size:16 final size:16
Alignment explanation
Indices: 81797--81876 Score: 85
Period size: 16 Copynumber: 4.9 Consensus size: 16
81787 AGAGAAGAGA
81797 GTTGTATTGGAGAAAAT
1 GTTG-ATTGGAGAAAAT
*
81814 GTTGATTGGAGAAAGT
1 GTTGATTGGAGAAAAT
81830 GTTGATTGGAGAAAAT
1 GTTGATTGGAGAAAAT
81846 G--G-TTGGATTGAAAAT
1 GTTGATTGGA--GAAAAT
81861 GGTTGGATTGGAGAAA
1 -GTT-GATTGGAGAAA
81877 TTGGTTGGAT
Statistics
Matches: 54, Mismatches: 2, Indels: 13
0.78 0.03 0.19
Matches are distributed among these distances:
13 5 0.09
14 1 0.02
15 6 0.11
16 28 0.52
17 4 0.07
18 4 0.07
19 1 0.02
20 5 0.09
ACGTcount: A:0.34, C:0.00, G:0.35, T:0.31
Consensus pattern (16 bp):
GTTGATTGGAGAAAAT
Left flanking sequence: Indices 81297 -- 81796
GTGCAACCACAAGACACAGAACTTCAACCGGCCGTACGACTACAAAAAACACCTTTTGCACATGC
ATTTCCGGTTCGACGACCCCAAGGGCAAGTCTGCCAACACCCTCACCGACAAGTTGCCGCTGCTG
GGCCAGTGTATGGCGTGTGGGGCCAAGTTTGTCGCCAAGGACTGGTTGGACCACCACGTGTTGAC
GCCCGACGCACAGGCCCGGTGTCCGTACGTGGAGCTGGTGCGGGCGATGACTCAGGCCGACTACC
AGGCGGTGAGAGCTCCTTTTTAGGTGGTGTGGTAGTGGAGCGTGGCAGAGCGGTAGACCATGGTA
GACTGTGGTGTGTTGTGGTGTGTGGTGCTGTGCACCAGACAGCAGGTGCTGTGCACCCGGCAGCA
CCGATATTTATAATTCTAGACCGATACCCTAATGACTATACACATGGCTGGAATAAACGACAGTA
ATGAGGAAAGTAGGCGTAGGAGTGGATATGAGAGTAGAGAAGAGA
Right flanking sequence: Indices 81877 -- 82376
TTGGTTGGATTGGGGTGGTTATGGACGTAGTTTGGTGTATGATGTGTAAGACGGTTGAAATGTGG
AGTTAATCGACGTAGTTTGGTGTTTGGTGTTTGGTGTTTGGTGTGCTTGGTGTGTTCATTTGTGT
TCGTTGTTGAAGACTTTGGTGGAAAAAACGTTAATGTCCTAAAGGGATTTAAGGTGTGTTCCATG
TGGGGTAGTCAGATGAGTCCCAGATGAATCTTTGGATTTACAGAATCTCGAGGCGATCGGGATCG
GTGATGAGAGCGATGAGATGAGAGAGCGAGACAAAGAGTGAGAGATGGCGAGACGAAGATTGAGA
GGTGGTAAGACGGACTGAGATCGAAATGAGTAGAAATTTCAACAGAACAAATCAATCAAATAAAT
CAACCGAATAAATCAAGCAAATAACACAGTCGAATAATCAATCAAATAAATCAAATGAATAACAC
AACCGAATAATCAATCGAATAAATCAAGCGAATAATTAATCAAAT
Found at i:81860 original size:15 final size:15
Alignment explanation
Indices: 81840--81888 Score: 71
Period size: 15 Copynumber: 3.1 Consensus size: 15
81830 GTTGATTGGA
81840 GAAAATGGTTGGATT
1 GAAAATGGTTGGATT
81855 GAAAATGGTTGGATT
1 GAAAATGGTTGGATT
81870 GGAGAAATTGGTTGGATT
1 -GA-AAA-TGGTTGGATT
81888 G
1 G
81889 GGGTGGTTAT
Statistics
Matches: 31, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
15 15 0.48
16 2 0.06
17 4 0.13
18 10 0.32
ACGTcount: A:0.31, C:0.00, G:0.37, T:0.33
Consensus pattern (15 bp):
GAAAATGGTTGGATT
Left flanking sequence: Indices 81340 -- 81839
AAAAAACACCTTTTGCACATGCATTTCCGGTTCGACGACCCCAAGGGCAAGTCTGCCAACACCCT
CACCGACAAGTTGCCGCTGCTGGGCCAGTGTATGGCGTGTGGGGCCAAGTTTGTCGCCAAGGACT
GGTTGGACCACCACGTGTTGACGCCCGACGCACAGGCCCGGTGTCCGTACGTGGAGCTGGTGCGG
GCGATGACTCAGGCCGACTACCAGGCGGTGAGAGCTCCTTTTTAGGTGGTGTGGTAGTGGAGCGT
GGCAGAGCGGTAGACCATGGTAGACTGTGGTGTGTTGTGGTGTGTGGTGCTGTGCACCAGACAGC
AGGTGCTGTGCACCCGGCAGCACCGATATTTATAATTCTAGACCGATACCCTAATGACTATACAC
ATGGCTGGAATAAACGACAGTAATGAGGAAAGTAGGCGTAGGAGTGGATATGAGAGTAGAGAAGA
GAGTTGTATTGGAGAAAATGTTGATTGGAGAAAGTGTTGATTGGA
Right flanking sequence: Indices 81889 -- 82388
GGGTGGTTATGGACGTAGTTTGGTGTATGATGTGTAAGACGGTTGAAATGTGGAGTTAATCGACG
TAGTTTGGTGTTTGGTGTTTGGTGTTTGGTGTGCTTGGTGTGTTCATTTGTGTTCGTTGTTGAAG
ACTTTGGTGGAAAAAACGTTAATGTCCTAAAGGGATTTAAGGTGTGTTCCATGTGGGGTAGTCAG
ATGAGTCCCAGATGAATCTTTGGATTTACAGAATCTCGAGGCGATCGGGATCGGTGATGAGAGCG
ATGAGATGAGAGAGCGAGACAAAGAGTGAGAGATGGCGAGACGAAGATTGAGAGGTGGTAAGACG
GACTGAGATCGAAATGAGTAGAAATTTCAACAGAACAAATCAATCAAATAAATCAACCGAATAAA
TCAAGCAAATAACACAGTCGAATAATCAATCAAATAAATCAAATGAATAACACAACCGAATAATC
AATCGAATAAATCAAGCGAATAATTAATCAAATATCTCATTCGAC
Found at i:81875 original size:33 final size:34
Alignment explanation
Indices: 81788--81888 Score: 113
Period size: 33 Copynumber: 3.0 Consensus size: 34
81778 TATGAGAGTA
* *
81788 GAGAAGAGAGTTGTATTGGAGAAAAT-GTT-GATT
1 GAGAA-AGTGTTGGATTGGAGAAAATGGTTGGATT
81821 GGAGAAAGTGTT-GATTGGAGAAAATGGTTGGATT
1 -GAGAAAGTGTTGGATTGGAGAAAATGGTTGGATT
*
81855 GA-AAA-TGGTTGGATTGGAGAAATTGGTTGGATT
1 GAGAAAGT-GTTGGATTGGAGAAAATGGTTGGATT
81888 G
1 G
81889 GGGTGGTTAT
Statistics
Matches: 60, Mismatches: 3, Indels: 9
0.83 0.04 0.12
Matches are distributed among these distances:
31 1 0.02
32 18 0.30
33 32 0.53
34 9 0.15
ACGTcount: A:0.33, C:0.00, G:0.37, T:0.31
Consensus pattern (34 bp):
GAGAAAGTGTTGGATTGGAGAAAATGGTTGGATT
Left flanking sequence: Indices 81288 -- 81787
GAAACAGATGTGCAACCACAAGACACAGAACTTCAACCGGCCGTACGACTACAAAAAACACCTTT
TGCACATGCATTTCCGGTTCGACGACCCCAAGGGCAAGTCTGCCAACACCCTCACCGACAAGTTG
CCGCTGCTGGGCCAGTGTATGGCGTGTGGGGCCAAGTTTGTCGCCAAGGACTGGTTGGACCACCA
CGTGTTGACGCCCGACGCACAGGCCCGGTGTCCGTACGTGGAGCTGGTGCGGGCGATGACTCAGG
CCGACTACCAGGCGGTGAGAGCTCCTTTTTAGGTGGTGTGGTAGTGGAGCGTGGCAGAGCGGTAG
ACCATGGTAGACTGTGGTGTGTTGTGGTGTGTGGTGCTGTGCACCAGACAGCAGGTGCTGTGCAC
CCGGCAGCACCGATATTTATAATTCTAGACCGATACCCTAATGACTATACACATGGCTGGAATAA
ACGACAGTAATGAGGAAAGTAGGCGTAGGAGTGGATATGAGAGTA
Right flanking sequence: Indices 81889 -- 82388
GGGTGGTTATGGACGTAGTTTGGTGTATGATGTGTAAGACGGTTGAAATGTGGAGTTAATCGACG
TAGTTTGGTGTTTGGTGTTTGGTGTTTGGTGTGCTTGGTGTGTTCATTTGTGTTCGTTGTTGAAG
ACTTTGGTGGAAAAAACGTTAATGTCCTAAAGGGATTTAAGGTGTGTTCCATGTGGGGTAGTCAG
ATGAGTCCCAGATGAATCTTTGGATTTACAGAATCTCGAGGCGATCGGGATCGGTGATGAGAGCG
ATGAGATGAGAGAGCGAGACAAAGAGTGAGAGATGGCGAGACGAAGATTGAGAGGTGGTAAGACG
GACTGAGATCGAAATGAGTAGAAATTTCAACAGAACAAATCAATCAAATAAATCAACCGAATAAA
TCAAGCAAATAACACAGTCGAATAATCAATCAAATAAATCAAATGAATAACACAACCGAATAATC
AATCGAATAAATCAAGCGAATAATTAATCAAATATCTCATTCGAC
Found at i:81968 original size:7 final size:7
Alignment explanation
Indices: 81956--81985 Score: 60
Period size: 7 Copynumber: 4.3 Consensus size: 7
81946 AATCGACGTA
81956 GTTTGGT
1 GTTTGGT
81963 GTTTGGT
1 GTTTGGT
81970 GTTTGGT
1 GTTTGGT
81977 GTTTGGT
1 GTTTGGT
81984 GT
1 GT
81986 GCTTGGTGTG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 23 1.00
ACGTcount: A:0.00, C:0.00, G:0.43, T:0.57
Consensus pattern (7 bp):
GTTTGGT
Left flanking sequence: Indices 81456 -- 81955
TGTCGCCAAGGACTGGTTGGACCACCACGTGTTGACGCCCGACGCACAGGCCCGGTGTCCGTACG
TGGAGCTGGTGCGGGCGATGACTCAGGCCGACTACCAGGCGGTGAGAGCTCCTTTTTAGGTGGTG
TGGTAGTGGAGCGTGGCAGAGCGGTAGACCATGGTAGACTGTGGTGTGTTGTGGTGTGTGGTGCT
GTGCACCAGACAGCAGGTGCTGTGCACCCGGCAGCACCGATATTTATAATTCTAGACCGATACCC
TAATGACTATACACATGGCTGGAATAAACGACAGTAATGAGGAAAGTAGGCGTAGGAGTGGATAT
GAGAGTAGAGAAGAGAGTTGTATTGGAGAAAATGTTGATTGGAGAAAGTGTTGATTGGAGAAAAT
GGTTGGATTGAAAATGGTTGGATTGGAGAAATTGGTTGGATTGGGGTGGTTATGGACGTAGTTTG
GTGTATGATGTGTAAGACGGTTGAAATGTGGAGTTAATCGACGTA
Right flanking sequence: Indices 81986 -- 82485
GCTTGGTGTGTTCATTTGTGTTCGTTGTTGAAGACTTTGGTGGAAAAAACGTTAATGTCCTAAAG
GGATTTAAGGTGTGTTCCATGTGGGGTAGTCAGATGAGTCCCAGATGAATCTTTGGATTTACAGA
ATCTCGAGGCGATCGGGATCGGTGATGAGAGCGATGAGATGAGAGAGCGAGACAAAGAGTGAGAG
ATGGCGAGACGAAGATTGAGAGGTGGTAAGACGGACTGAGATCGAAATGAGTAGAAATTTCAACA
GAACAAATCAATCAAATAAATCAACCGAATAAATCAAGCAAATAACACAGTCGAATAATCAATCA
AATAAATCAAATGAATAACACAACCGAATAATCAATCGAATAAATCAAGCGAATAATTAATCAAA
TATCTCATTCGACTAATCAATCCAATAAATCAATCCAATAAATCAATCAAATAATCAAATACAAA
CGACAAGCAACAGACCCGATCTGTCTCACATGACTCCCAACCAAT
Found at i:82181 original size:22 final size:22
Alignment explanation
Indices: 82155--82202 Score: 64
Period size: 22 Copynumber: 2.3 Consensus size: 22
82145 AGCGATGAGA
82155 TGAGAGA--GCGAGACAAAGAG
1 TGAGAGATGGCGAGACAAAGAG
* *
82175 TGAGAGATGGCGAGACGAAGAT
1 TGAGAGATGGCGAGACAAAGAG
82197 TGAGAG
1 TGAGAG
82203 GTGGTAAGAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
20 7 0.29
22 17 0.71
ACGTcount: A:0.40, C:0.08, G:0.42, T:0.10
Consensus pattern (22 bp):
TGAGAGATGGCGAGACAAAGAG
Left flanking sequence: Indices 81655 -- 82154
ACCAGACAGCAGGTGCTGTGCACCCGGCAGCACCGATATTTATAATTCTAGACCGATACCCTAAT
GACTATACACATGGCTGGAATAAACGACAGTAATGAGGAAAGTAGGCGTAGGAGTGGATATGAGA
GTAGAGAAGAGAGTTGTATTGGAGAAAATGTTGATTGGAGAAAGTGTTGATTGGAGAAAATGGTT
GGATTGAAAATGGTTGGATTGGAGAAATTGGTTGGATTGGGGTGGTTATGGACGTAGTTTGGTGT
ATGATGTGTAAGACGGTTGAAATGTGGAGTTAATCGACGTAGTTTGGTGTTTGGTGTTTGGTGTT
TGGTGTGCTTGGTGTGTTCATTTGTGTTCGTTGTTGAAGACTTTGGTGGAAAAAACGTTAATGTC
CTAAAGGGATTTAAGGTGTGTTCCATGTGGGGTAGTCAGATGAGTCCCAGATGAATCTTTGGATT
TACAGAATCTCGAGGCGATCGGGATCGGTGATGAGAGCGATGAGA
Right flanking sequence: Indices 82203 -- 82702
GTGGTAAGACGGACTGAGATCGAAATGAGTAGAAATTTCAACAGAACAAATCAATCAAATAAATC
AACCGAATAAATCAAGCAAATAACACAGTCGAATAATCAATCAAATAAATCAAATGAATAACACA
ACCGAATAATCAATCGAATAAATCAAGCGAATAATTAATCAAATATCTCATTCGACTAATCAATC
CAATAAATCAATCCAATAAATCAATCAAATAATCAAATACAAACGACAAGCAACAGACCCGATCT
GTCTCACATGACTCCCAACCAATTGTTGGGACCCAACGTGTCTGAGCCTGCCTCATCCCACCCGT
AAACGCGTCTCTTTGGGGAACAACCGAGGCAGTGGCTCAAGCATACGCGAAGCTCCATCAGCAGC
CAAACCCCGGCGACGGGGGGCACGGGAAATTATATGTTCCCTGCCACAGAGATAATACCAGGTTA
CCATGTCCCTGGTGGACTCGCAATATTATCAGTGGCATGTGCTGG
Found at i:82266 original size:13 final size:13
Alignment explanation
Indices: 82250--82433 Score: 132
Period size: 13 Copynumber: 14.5 Consensus size: 13
82240 TCAACAGAAC
*
82250 AAATCAATCAAAT
1 AAATCAATCGAAT
*
82263 AAATCAACCGAAT
1 AAATCAATCGAAT
* *
82276 AAATCAAGCAAAT
1 AAATCAATCGAAT
*
82289 AACA-CAGTCGAAT
1 AA-ATCAATCGAAT
*
82302 -AATCAATCAAAT
1 AAATCAATCGAAT
82314 AAATCAAAT-GAAT
1 AAATC-AATCGAAT
*
82327 AACA-CAACCGAAT
1 AA-ATCAATCGAAT
82340 -AATCAATCGAAT
1 AAATCAATCGAAT
*
82352 AAATCAAGCGAAT
1 AAATCAATCGAAT
* *
82365 -AATTAATCAAAT
1 AAATCAATCGAAT
** * *
82377 ATCTCATTCGACT
1 AAATCAATCGAAT
*
82390 -AATCAATCCAAT
1 AAATCAATCGAAT
*
82402 AAATCAATCCAAT
1 AAATCAATCGAAT
*
82415 AAATCAATCAAAT
1 AAATCAATCGAAT
82428 -AATCAA
1 AAATCAA
82434 ATACAAACGA
Statistics
Matches: 133, Mismatches: 28, Indels: 21
0.73 0.15 0.12
Matches are distributed among these distances:
11 2 0.02
12 41 0.31
13 85 0.64
14 5 0.04
ACGTcount: A:0.54, C:0.19, G:0.05, T:0.22
Consensus pattern (13 bp):
AAATCAATCGAAT
Left flanking sequence: Indices 81750 -- 82249
TAATGAGGAAAGTAGGCGTAGGAGTGGATATGAGAGTAGAGAAGAGAGTTGTATTGGAGAAAATG
TTGATTGGAGAAAGTGTTGATTGGAGAAAATGGTTGGATTGAAAATGGTTGGATTGGAGAAATTG
GTTGGATTGGGGTGGTTATGGACGTAGTTTGGTGTATGATGTGTAAGACGGTTGAAATGTGGAGT
TAATCGACGTAGTTTGGTGTTTGGTGTTTGGTGTTTGGTGTGCTTGGTGTGTTCATTTGTGTTCG
TTGTTGAAGACTTTGGTGGAAAAAACGTTAATGTCCTAAAGGGATTTAAGGTGTGTTCCATGTGG
GGTAGTCAGATGAGTCCCAGATGAATCTTTGGATTTACAGAATCTCGAGGCGATCGGGATCGGTG
ATGAGAGCGATGAGATGAGAGAGCGAGACAAAGAGTGAGAGATGGCGAGACGAAGATTGAGAGGT
GGTAAGACGGACTGAGATCGAAATGAGTAGAAATTTCAACAGAAC
Right flanking sequence: Indices 82434 -- 82933
ATACAAACGACAAGCAACAGACCCGATCTGTCTCACATGACTCCCAACCAATTGTTGGGACCCAA
CGTGTCTGAGCCTGCCTCATCCCACCCGTAAACGCGTCTCTTTGGGGAACAACCGAGGCAGTGGC
TCAAGCATACGCGAAGCTCCATCAGCAGCCAAACCCCGGCGACGGGGGGCACGGGAAATTATATG
TTCCCTGCCACAGAGATAATACCAGGTTACCATGTCCCTGGTGGACTCGCAATATTATCAGTGGC
ATGTGCTGGCTGTGGTTTTGAACCGGGTTTCAGATTTGTTCTCTGACACACGTCAACTCGGGGCC
CACTTCGAGCATCGAAAGGTACCCGGGTGGTCGCAAGTTCCACCATCCGTCTGTCCCAGATTGGC
CCGGGTGGTTGGTGAGACAACCCCTGTCAATCTCGGCCGCTGTCAACCCCTGGCTGCGCCTACCT
CTCAAACCCATTCTAATTCATGTTCCATTGCACCATGAGGCTGGC
Found at i:82269 original size:26 final size:24
Alignment explanation
Indices: 82240--82320 Score: 74
Period size: 26 Copynumber: 3.2 Consensus size: 24
82230 AGTAGAAATT
82240 TCAACAGAACAAATCAATCAAATAAA
1 TCAAC-GAA-AAATCAATCAAATAAA
*
82266 TCAACCGAATAAATCAAGCAAATAACA
1 TCAA-CGAA-AAATCAATCAAATAA-A
* *
82293 -CAGTCGAATAATCAATCAAATAAA
1 TCA-ACGAAAAATCAATCAAATAAA
82317 TCAA
1 TCAA
82321 ATGAATAACA
Statistics
Matches: 45, Mismatches: 6, Indels: 10
0.74 0.10 0.16
Matches are distributed among these distances:
24 1 0.02
25 15 0.33
26 27 0.60
27 2 0.04
ACGTcount: A:0.57, C:0.20, G:0.06, T:0.17
Consensus pattern (24 bp):
TCAACGAAAAATCAATCAAATAAA
Left flanking sequence: Indices 81740 -- 82239
TAAACGACAGTAATGAGGAAAGTAGGCGTAGGAGTGGATATGAGAGTAGAGAAGAGAGTTGTATT
GGAGAAAATGTTGATTGGAGAAAGTGTTGATTGGAGAAAATGGTTGGATTGAAAATGGTTGGATT
GGAGAAATTGGTTGGATTGGGGTGGTTATGGACGTAGTTTGGTGTATGATGTGTAAGACGGTTGA
AATGTGGAGTTAATCGACGTAGTTTGGTGTTTGGTGTTTGGTGTTTGGTGTGCTTGGTGTGTTCA
TTTGTGTTCGTTGTTGAAGACTTTGGTGGAAAAAACGTTAATGTCCTAAAGGGATTTAAGGTGTG
TTCCATGTGGGGTAGTCAGATGAGTCCCAGATGAATCTTTGGATTTACAGAATCTCGAGGCGATC
GGGATCGGTGATGAGAGCGATGAGATGAGAGAGCGAGACAAAGAGTGAGAGATGGCGAGACGAAG
ATTGAGAGGTGGTAAGACGGACTGAGATCGAAATGAGTAGAAATT
Right flanking sequence: Indices 82321 -- 82820
ATGAATAACACAACCGAATAATCAATCGAATAAATCAAGCGAATAATTAATCAAATATCTCATTC
GACTAATCAATCCAATAAATCAATCCAATAAATCAATCAAATAATCAAATACAAACGACAAGCAA
CAGACCCGATCTGTCTCACATGACTCCCAACCAATTGTTGGGACCCAACGTGTCTGAGCCTGCCT
CATCCCACCCGTAAACGCGTCTCTTTGGGGAACAACCGAGGCAGTGGCTCAAGCATACGCGAAGC
TCCATCAGCAGCCAAACCCCGGCGACGGGGGGCACGGGAAATTATATGTTCCCTGCCACAGAGAT
AATACCAGGTTACCATGTCCCTGGTGGACTCGCAATATTATCAGTGGCATGTGCTGGCTGTGGTT
TTGAACCGGGTTTCAGATTTGTTCTCTGACACACGTCAACTCGGGGCCCACTTCGAGCATCGAAA
GGTACCCGGGTGGTCGCAAGTTCCACCATCCGTCTGTCCCAGATT
Found at i:82306 original size:38 final size:38
Alignment explanation
Indices: 82264--82366 Score: 143
Period size: 38 Copynumber: 2.7 Consensus size: 38
82254 CAATCAAATA
* * **
82264 AATCAACCGAATAAATCAAGCAAATAACACAGTCGAAT
1 AATCAATCGAATAAATCAAGCGAATAACACAACCGAAT
* **
82302 AATCAATCAAATAAATCAAATGAATAACACAACCGAAT
1 AATCAATCGAATAAATCAAGCGAATAACACAACCGAAT
82340 AATCAATCGAATAAATCAAGCGAATAA
1 AATCAATCGAATAAATCAAGCGAATAA
82367 TTAATCAAAT
Statistics
Matches: 55, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
38 55 1.00
ACGTcount: A:0.55, C:0.18, G:0.09, T:0.17
Consensus pattern (38 bp):
AATCAATCGAATAAATCAAGCGAATAACACAACCGAAT
Left flanking sequence: Indices 81764 -- 82263
GGCGTAGGAGTGGATATGAGAGTAGAGAAGAGAGTTGTATTGGAGAAAATGTTGATTGGAGAAAG
TGTTGATTGGAGAAAATGGTTGGATTGAAAATGGTTGGATTGGAGAAATTGGTTGGATTGGGGTG
GTTATGGACGTAGTTTGGTGTATGATGTGTAAGACGGTTGAAATGTGGAGTTAATCGACGTAGTT
TGGTGTTTGGTGTTTGGTGTTTGGTGTGCTTGGTGTGTTCATTTGTGTTCGTTGTTGAAGACTTT
GGTGGAAAAAACGTTAATGTCCTAAAGGGATTTAAGGTGTGTTCCATGTGGGGTAGTCAGATGAG
TCCCAGATGAATCTTTGGATTTACAGAATCTCGAGGCGATCGGGATCGGTGATGAGAGCGATGAG
ATGAGAGAGCGAGACAAAGAGTGAGAGATGGCGAGACGAAGATTGAGAGGTGGTAAGACGGACTG
AGATCGAAATGAGTAGAAATTTCAACAGAACAAATCAATCAAATA
Right flanking sequence: Indices 82367 -- 82866
TTAATCAAATATCTCATTCGACTAATCAATCCAATAAATCAATCCAATAAATCAATCAAATAATC
AAATACAAACGACAAGCAACAGACCCGATCTGTCTCACATGACTCCCAACCAATTGTTGGGACCC
AACGTGTCTGAGCCTGCCTCATCCCACCCGTAAACGCGTCTCTTTGGGGAACAACCGAGGCAGTG
GCTCAAGCATACGCGAAGCTCCATCAGCAGCCAAACCCCGGCGACGGGGGGCACGGGAAATTATA
TGTTCCCTGCCACAGAGATAATACCAGGTTACCATGTCCCTGGTGGACTCGCAATATTATCAGTG
GCATGTGCTGGCTGTGGTTTTGAACCGGGTTTCAGATTTGTTCTCTGACACACGTCAACTCGGGG
CCCACTTCGAGCATCGAAAGGTACCCGGGTGGTCGCAAGTTCCACCATCCGTCTGTCCCAGATTG
GCCCGGGTGGTTGGTGAGACAACCCCTGTCAATCTCGGCCGCTGT
Found at i:82341 original size:51 final size:51
Alignment explanation
Indices: 82250--82421 Score: 136
Period size: 51 Copynumber: 3.4 Consensus size: 51
82240 TCAACAGAAC
* *
82250 AAATCAATCAAATAAATCAACCGAATAAATCAAGCAAATAA-CACAGTCGAAT
1 AAATCAATCAAATAAATCAAACGAATAAATCAACCAAATAATCA-A-TCGAAT
* *
82302 -AATCAATCAAATAAATCAAATGAATAACA-CAACCGAATAATCAATCGAAT
1 AAATCAATCAAATAAATCAAACGAATAA-ATCAACCAAATAATCAATCGAAT
* * * * * ** ** * * *
82352 AAATCAAGCGAAT-AATTAATCAAATATCTCATTCGACTAATCAATCCAAT
1 AAATCAATCAAATAAATCAAACGAATAAATCAACCAAATAATCAATCGAAT
*
82402 AAATCAATCCAATAAATCAA
1 AAATCAATCAAATAAATCAA
82422 TCAAATAATC
Statistics
Matches: 96, Mismatches: 19, Indels: 11
0.76 0.15 0.09
Matches are distributed among these distances:
50 43 0.45
51 50 0.52
52 3 0.03
ACGTcount: A:0.53, C:0.19, G:0.06, T:0.22
Consensus pattern (51 bp):
AAATCAATCAAATAAATCAAACGAATAAATCAACCAAATAATCAATCGAAT
Left flanking sequence: Indices 81750 -- 82249
TAATGAGGAAAGTAGGCGTAGGAGTGGATATGAGAGTAGAGAAGAGAGTTGTATTGGAGAAAATG
TTGATTGGAGAAAGTGTTGATTGGAGAAAATGGTTGGATTGAAAATGGTTGGATTGGAGAAATTG
GTTGGATTGGGGTGGTTATGGACGTAGTTTGGTGTATGATGTGTAAGACGGTTGAAATGTGGAGT
TAATCGACGTAGTTTGGTGTTTGGTGTTTGGTGTTTGGTGTGCTTGGTGTGTTCATTTGTGTTCG
TTGTTGAAGACTTTGGTGGAAAAAACGTTAATGTCCTAAAGGGATTTAAGGTGTGTTCCATGTGG
GGTAGTCAGATGAGTCCCAGATGAATCTTTGGATTTACAGAATCTCGAGGCGATCGGGATCGGTG
ATGAGAGCGATGAGATGAGAGAGCGAGACAAAGAGTGAGAGATGGCGAGACGAAGATTGAGAGGT
GGTAAGACGGACTGAGATCGAAATGAGTAGAAATTTCAACAGAAC
Right flanking sequence: Indices 82422 -- 82921
TCAAATAATCAAATACAAACGACAAGCAACAGACCCGATCTGTCTCACATGACTCCCAACCAATT
GTTGGGACCCAACGTGTCTGAGCCTGCCTCATCCCACCCGTAAACGCGTCTCTTTGGGGAACAAC
CGAGGCAGTGGCTCAAGCATACGCGAAGCTCCATCAGCAGCCAAACCCCGGCGACGGGGGGCACG
GGAAATTATATGTTCCCTGCCACAGAGATAATACCAGGTTACCATGTCCCTGGTGGACTCGCAAT
ATTATCAGTGGCATGTGCTGGCTGTGGTTTTGAACCGGGTTTCAGATTTGTTCTCTGACACACGT
CAACTCGGGGCCCACTTCGAGCATCGAAAGGTACCCGGGTGGTCGCAAGTTCCACCATCCGTCTG
TCCCAGATTGGCCCGGGTGGTTGGTGAGACAACCCCTGTCAATCTCGGCCGCTGTCAACCCCTGG
CTGCGCCTACCTCTCAAACCCATTCTAATTCATGTTCCATTGCAC
Found at i:82343 original size:25 final size:25
Alignment explanation
Indices: 82250--82433 Score: 101
Period size: 25 Copynumber: 7.3 Consensus size: 25
82240 TCAACAGAAC
* * *
82250 AAATCAATCAAATAAATCAACCGAAT
1 AAATCAACCGAAT-AATCAATCGAAT
* *
82276 AAATCAAGCAAATAA-CACAGTCGAAT
1 AAATCAACCGAATAATCA-A-TCGAAT
* *
82302 -AATCAATCAAATAAATCAAAT-GAAT
1 AAATCAACCGAAT-AATC-AATCGAAT
82327 AACA-CAACCGAATAATCAATCGAAT
1 AA-ATCAACCGAATAATCAATCGAAT
* * *
82352 AAATCAAGCGAATAATTAATCAAAT
1 AAATCAACCGAATAATCAATCGAAT
** ** * *
82377 ATCTCATTCGACTAATCAATCCAAT
1 AAATCAACCGAATAATCAATCGAAT
*
82402 AAATCAATCC-AATAAATCAATCAAAT
1 AAATCAA-CCGAAT-AATCAATCGAAT
82428 -AATCAA
1 AAATCAA
82434 ATACAAACGA
Statistics
Matches: 126, Mismatches: 21, Indels: 23
0.74 0.12 0.14
Matches are distributed among these distances:
24 6 0.05
25 76 0.60
26 40 0.32
27 3 0.02
28 1 0.01
ACGTcount: A:0.54, C:0.19, G:0.05, T:0.22
Consensus pattern (25 bp):
AAATCAACCGAATAATCAATCGAAT
Left flanking sequence: Indices 81750 -- 82249
TAATGAGGAAAGTAGGCGTAGGAGTGGATATGAGAGTAGAGAAGAGAGTTGTATTGGAGAAAATG
TTGATTGGAGAAAGTGTTGATTGGAGAAAATGGTTGGATTGAAAATGGTTGGATTGGAGAAATTG
GTTGGATTGGGGTGGTTATGGACGTAGTTTGGTGTATGATGTGTAAGACGGTTGAAATGTGGAGT
TAATCGACGTAGTTTGGTGTTTGGTGTTTGGTGTTTGGTGTGCTTGGTGTGTTCATTTGTGTTCG
TTGTTGAAGACTTTGGTGGAAAAAACGTTAATGTCCTAAAGGGATTTAAGGTGTGTTCCATGTGG
GGTAGTCAGATGAGTCCCAGATGAATCTTTGGATTTACAGAATCTCGAGGCGATCGGGATCGGTG
ATGAGAGCGATGAGATGAGAGAGCGAGACAAAGAGTGAGAGATGGCGAGACGAAGATTGAGAGGT
GGTAAGACGGACTGAGATCGAAATGAGTAGAAATTTCAACAGAAC
Right flanking sequence: Indices 82434 -- 82933
ATACAAACGACAAGCAACAGACCCGATCTGTCTCACATGACTCCCAACCAATTGTTGGGACCCAA
CGTGTCTGAGCCTGCCTCATCCCACCCGTAAACGCGTCTCTTTGGGGAACAACCGAGGCAGTGGC
TCAAGCATACGCGAAGCTCCATCAGCAGCCAAACCCCGGCGACGGGGGGCACGGGAAATTATATG
TTCCCTGCCACAGAGATAATACCAGGTTACCATGTCCCTGGTGGACTCGCAATATTATCAGTGGC
ATGTGCTGGCTGTGGTTTTGAACCGGGTTTCAGATTTGTTCTCTGACACACGTCAACTCGGGGCC
CACTTCGAGCATCGAAAGGTACCCGGGTGGTCGCAAGTTCCACCATCCGTCTGTCCCAGATTGGC
CCGGGTGGTTGGTGAGACAACCCCTGTCAATCTCGGCCGCTGTCAACCCCTGGCTGCGCCTACCT
CTCAAACCCATTCTAATTCATGTTCCATTGCACCATGAGGCTGGC
Found at i:82432 original size:38 final size:39
Alignment explanation
Indices: 82250--82433 Score: 139
Period size: 38 Copynumber: 4.8 Consensus size: 39
82240 TCAACAGAAC
* *
82250 AAATCAATCAAATAAATCAACCGAATAAATCAAGCAAAT
1 AAATCAATCAAATAAATCAATCGAATAAATCAAGCGAAT
* * * **
82289 AACA-CAGTCGAAT-AATCAATCAAATAAATCAAATGAAT
1 AA-ATCAATCAAATAAATCAATCGAATAAATCAAGCGAAT
* *
82327 AACA-CAACCGAAT-AATCAATCGAATAAATCAAGCGAAT
1 AA-ATCAATCAAATAAATCAATCGAATAAATCAAGCGAAT
* ** * * * *
82365 -AATTAATCAAATATCTCATTCGACT-AATCAATCCAAT
1 AAATCAATCAAATAAATCAATCGAATAAATCAAGCGAAT
* *
82402 AAATCAATCCAATAAATCAATCAAAT-AATCAA
1 AAATCAATCAAATAAATCAATCGAATAAATCAA
82434 ATACAAACGA
Statistics
Matches: 113, Mismatches: 28, Indels: 9
0.75 0.19 0.06
Matches are distributed among these distances:
36 1 0.01
37 17 0.15
38 85 0.75
39 9 0.08
40 1 0.01
ACGTcount: A:0.54, C:0.19, G:0.05, T:0.22
Consensus pattern (39 bp):
AAATCAATCAAATAAATCAATCGAATAAATCAAGCGAAT
Left flanking sequence: Indices 81750 -- 82249
TAATGAGGAAAGTAGGCGTAGGAGTGGATATGAGAGTAGAGAAGAGAGTTGTATTGGAGAAAATG
TTGATTGGAGAAAGTGTTGATTGGAGAAAATGGTTGGATTGAAAATGGTTGGATTGGAGAAATTG
GTTGGATTGGGGTGGTTATGGACGTAGTTTGGTGTATGATGTGTAAGACGGTTGAAATGTGGAGT
TAATCGACGTAGTTTGGTGTTTGGTGTTTGGTGTTTGGTGTGCTTGGTGTGTTCATTTGTGTTCG
TTGTTGAAGACTTTGGTGGAAAAAACGTTAATGTCCTAAAGGGATTTAAGGTGTGTTCCATGTGG
GGTAGTCAGATGAGTCCCAGATGAATCTTTGGATTTACAGAATCTCGAGGCGATCGGGATCGGTG
ATGAGAGCGATGAGATGAGAGAGCGAGACAAAGAGTGAGAGATGGCGAGACGAAGATTGAGAGGT
GGTAAGACGGACTGAGATCGAAATGAGTAGAAATTTCAACAGAAC
Right flanking sequence: Indices 82434 -- 82933
ATACAAACGACAAGCAACAGACCCGATCTGTCTCACATGACTCCCAACCAATTGTTGGGACCCAA
CGTGTCTGAGCCTGCCTCATCCCACCCGTAAACGCGTCTCTTTGGGGAACAACCGAGGCAGTGGC
TCAAGCATACGCGAAGCTCCATCAGCAGCCAAACCCCGGCGACGGGGGGCACGGGAAATTATATG
TTCCCTGCCACAGAGATAATACCAGGTTACCATGTCCCTGGTGGACTCGCAATATTATCAGTGGC
ATGTGCTGGCTGTGGTTTTGAACCGGGTTTCAGATTTGTTCTCTGACACACGTCAACTCGGGGCC
CACTTCGAGCATCGAAAGGTACCCGGGTGGTCGCAAGTTCCACCATCCGTCTGTCCCAGATTGGC
CCGGGTGGTTGGTGAGACAACCCCTGTCAATCTCGGCCGCTGTCAACCCCTGGCTGCGCCTACCT
CTCAAACCCATTCTAATTCATGTTCCATTGCACCATGAGGCTGGC
Found at i:83523 original size:18 final size:18
Alignment explanation
Indices: 83500--83534 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
83490 GATCTAAAAC
83500 CAGGGGAAGAGGGGTAGA
1 CAGGGGAAGAGGGGTAGA
83518 CAGGGGAAGAGGGGTAG
1 CAGGGGAAGAGGGGTAG
83535 GGGAAGGAGG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.31, C:0.06, G:0.57, T:0.06
Consensus pattern (18 bp):
CAGGGGAAGAGGGGTAGA
Left flanking sequence: Indices 83000 -- 83499
CCGGGATCCCCCGTGGCGATCCGAGCACATGCGAGCGCATGCAACCGCGGTGGTAATGCAACCAC
ATCAGCCAATCCACAAAAGCAACGGGAACAATCAAGTTTTACCGAGACATAAAACGGGTGACCCG
CGGTCATACGACTCTGCTGTAGGCCTCAGCCGTGGCGACGCCGGTGGTGGCAAAATATCCCGATA
AGAAAAGAAGAATTACAGGACGATGAAGAATTACAGGAAAATGTCACGAATTACAGGAGACATGC
TGAAAGGCTTGGCCGTCAGCTTGGCCGTGGGGTCAGCCCATGACACATGGGCAAGCTGGCTAAGC
CACTACGTAATTGATCTGTCACTGAGATCGTGACACAAAACCCCACAAAGGAGGGTGTCATCGCA
AAGCCAGGGGAGAAGCCCCACAAAGCGCGAGAGGTTCGCCAGTGCATTTGTGGCACGGGTGGGGT
GTGTTGGTGGAGGGCTTTGTGGCTGGTGGTCCGCAGATCTAAAAC
Right flanking sequence: Indices 83535 -- 84034
GGGAAGGAGGGAATCAGGGACGGTATGAGGAGGGAAGGAAAAGAGAAAGGAAGAGAGAGTTAAAG
GAAGAAAGGAAGAAAGAAAGAAAGGGAGAAAGAGAGAAAGAGAGAAAGGAAGGAATATGTAACAA
GAGAAGAAAGATGAAACAAGGGAGAAAGATGAGAAATATGGAATAAGGGGAGAAAGATGTAACAA
AGGGAGAAAGATAGAACAAAGGAAAGGAGGAGAGAAAACGGAGAAATGGAGGAGAGAAAATGTTG
AAAGAGAAAGGAGGAAAGAGGAAAGGAGCATAGAGGAAAAAGGAGGAATTACGAGAATCTGGGAG
GGAGTAAACGAGCTAGAGGAGGAATGAACCGAGAGGAGGGATTAAAACACGTGACAGATAAGAGG
AACGGAGTAAGGAGTAGAACAAAGACTAAATAATAGAAGGTCAAATGAAACGATCAATGCCATTG
ACAATGGAAGAAATGCAGCCATCGACAATCACCGCTAAACGCACA
Found at i:83609 original size:8 final size:8
Alignment explanation
Indices: 83596--83651 Score: 62
Period size: 8 Copynumber: 7.0 Consensus size: 8
83586 AGAGAGAGTT
83596 AAAGGAAG
1 AAAGGAAG
83604 AAAGGAAG
1 AAAGGAAG
*
83612 AAAGAAAG
1 AAAGGAAG
*
83620 AAAGGGAG
1 AAAGGAAG
83628 AAA-GAGAG
1 AAAGGA-AG
83636 AAA-GAGAG
1 AAAGGA-AG
83644 AAAGGAAG
1 AAAGGAAG
83652 GAATATGTAA
Statistics
Matches: 42, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
7 1 0.02
8 39 0.93
9 2 0.05
ACGTcount: A:0.62, C:0.00, G:0.38, T:0.00
Consensus pattern (8 bp):
AAAGGAAG
Left flanking sequence: Indices 83096 -- 83595
TCAAGTTTTACCGAGACATAAAACGGGTGACCCGCGGTCATACGACTCTGCTGTAGGCCTCAGCC
GTGGCGACGCCGGTGGTGGCAAAATATCCCGATAAGAAAAGAAGAATTACAGGACGATGAAGAAT
TACAGGAAAATGTCACGAATTACAGGAGACATGCTGAAAGGCTTGGCCGTCAGCTTGGCCGTGGG
GTCAGCCCATGACACATGGGCAAGCTGGCTAAGCCACTACGTAATTGATCTGTCACTGAGATCGT
GACACAAAACCCCACAAAGGAGGGTGTCATCGCAAAGCCAGGGGAGAAGCCCCACAAAGCGCGAG
AGGTTCGCCAGTGCATTTGTGGCACGGGTGGGGTGTGTTGGTGGAGGGCTTTGTGGCTGGTGGTC
CGCAGATCTAAAACCAGGGGAAGAGGGGTAGACAGGGGAAGAGGGGTAGGGGAAGGAGGGAATCA
GGGACGGTATGAGGAGGGAAGGAAAAGAGAAAGGAAGAGAGAGTT
Right flanking sequence: Indices 83652 -- 84151
GAATATGTAACAAGAGAAGAAAGATGAAACAAGGGAGAAAGATGAGAAATATGGAATAAGGGGAG
AAAGATGTAACAAAGGGAGAAAGATAGAACAAAGGAAAGGAGGAGAGAAAACGGAGAAATGGAGG
AGAGAAAATGTTGAAAGAGAAAGGAGGAAAGAGGAAAGGAGCATAGAGGAAAAAGGAGGAATTAC
GAGAATCTGGGAGGGAGTAAACGAGCTAGAGGAGGAATGAACCGAGAGGAGGGATTAAAACACGT
GACAGATAAGAGGAACGGAGTAAGGAGTAGAACAAAGACTAAATAATAGAAGGTCAAATGAAACG
ATCAATGCCATTGACAATGGAAGAAATGCAGCCATCGACAATCACCGCTAAACGCACAATCCAGG
GGAAATCCAACCTCCATGAAACAAACTGGGATCTCCTCCACTACAAAACCTACCATCTATCTCAT
AAGTCGTCATATTAGCGCGTACGCGGGTCATTATATACAATCGTT
Found at i:83618 original size:4 final size:4
Alignment explanation
Indices: 83596--83647 Score: 50
Period size: 4 Copynumber: 13.0 Consensus size: 4
83586 AGAGAGAGTT
* * ** * *
83596 AAAG GAAG AAAG GAAG AAAG AAAG AAAG GGAG AAAG AGAG AAAG AGAG
1 AAAG AAAG AAAG AAAG AAAG AAAG AAAG AAAG AAAG AAAG AAAG AAAG
83644 AAAG
1 AAAG
83648 GAAGGAATAT
Statistics
Matches: 36, Mismatches: 12, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
4 36 1.00
ACGTcount: A:0.63, C:0.00, G:0.37, T:0.00
Consensus pattern (4 bp):
AAAG
Left flanking sequence: Indices 83096 -- 83595
TCAAGTTTTACCGAGACATAAAACGGGTGACCCGCGGTCATACGACTCTGCTGTAGGCCTCAGCC
GTGGCGACGCCGGTGGTGGCAAAATATCCCGATAAGAAAAGAAGAATTACAGGACGATGAAGAAT
TACAGGAAAATGTCACGAATTACAGGAGACATGCTGAAAGGCTTGGCCGTCAGCTTGGCCGTGGG
GTCAGCCCATGACACATGGGCAAGCTGGCTAAGCCACTACGTAATTGATCTGTCACTGAGATCGT
GACACAAAACCCCACAAAGGAGGGTGTCATCGCAAAGCCAGGGGAGAAGCCCCACAAAGCGCGAG
AGGTTCGCCAGTGCATTTGTGGCACGGGTGGGGTGTGTTGGTGGAGGGCTTTGTGGCTGGTGGTC
CGCAGATCTAAAACCAGGGGAAGAGGGGTAGACAGGGGAAGAGGGGTAGGGGAAGGAGGGAATCA
GGGACGGTATGAGGAGGGAAGGAAAAGAGAAAGGAAGAGAGAGTT
Right flanking sequence: Indices 83648 -- 84147
GAAGGAATATGTAACAAGAGAAGAAAGATGAAACAAGGGAGAAAGATGAGAAATATGGAATAAGG
GGAGAAAGATGTAACAAAGGGAGAAAGATAGAACAAAGGAAAGGAGGAGAGAAAACGGAGAAATG
GAGGAGAGAAAATGTTGAAAGAGAAAGGAGGAAAGAGGAAAGGAGCATAGAGGAAAAAGGAGGAA
TTACGAGAATCTGGGAGGGAGTAAACGAGCTAGAGGAGGAATGAACCGAGAGGAGGGATTAAAAC
ACGTGACAGATAAGAGGAACGGAGTAAGGAGTAGAACAAAGACTAAATAATAGAAGGTCAAATGA
AACGATCAATGCCATTGACAATGGAAGAAATGCAGCCATCGACAATCACCGCTAAACGCACAATC
CAGGGGAAATCCAACCTCCATGAAACAAACTGGGATCTCCTCCACTACAAAACCTACCATCTATC
TCATAAGTCGTCATATTAGCGCGTACGCGGGTCATTATATACAAT
Found at i:83623 original size:24 final size:24
Alignment explanation
Indices: 83578--83651 Score: 87
Period size: 24 Copynumber: 3.1 Consensus size: 24
83568 GAAGGAAAAG
* **
83578 AGAAAGGAAGAGAGAGTTAAAGGA
1 AGAAAGGAAGAAAGAGAGAAAGGA
* *
83602 AGAAAGGAAGAAAGAAAGAAAGGG
1 AGAAAGGAAGAAAGAGAGAAAGGA
83626 AGAAA-GAGAGAAAGAGAGAAAGGA
1 AGAAAGGA-AGAAAGAGAGAAAGGA
83650 AG
1 AG
83652 GAATATGTAA
Statistics
Matches: 42, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
23 2 0.05
24 40 0.95
ACGTcount: A:0.59, C:0.00, G:0.38, T:0.03
Consensus pattern (24 bp):
AGAAAGGAAGAAAGAGAGAAAGGA
Left flanking sequence: Indices 83078 -- 83577
CAAAAGCAACGGGAACAATCAAGTTTTACCGAGACATAAAACGGGTGACCCGCGGTCATACGACT
CTGCTGTAGGCCTCAGCCGTGGCGACGCCGGTGGTGGCAAAATATCCCGATAAGAAAAGAAGAAT
TACAGGACGATGAAGAATTACAGGAAAATGTCACGAATTACAGGAGACATGCTGAAAGGCTTGGC
CGTCAGCTTGGCCGTGGGGTCAGCCCATGACACATGGGCAAGCTGGCTAAGCCACTACGTAATTG
ATCTGTCACTGAGATCGTGACACAAAACCCCACAAAGGAGGGTGTCATCGCAAAGCCAGGGGAGA
AGCCCCACAAAGCGCGAGAGGTTCGCCAGTGCATTTGTGGCACGGGTGGGGTGTGTTGGTGGAGG
GCTTTGTGGCTGGTGGTCCGCAGATCTAAAACCAGGGGAAGAGGGGTAGACAGGGGAAGAGGGGT
AGGGGAAGGAGGGAATCAGGGACGGTATGAGGAGGGAAGGAAAAG
Right flanking sequence: Indices 83652 -- 84151
GAATATGTAACAAGAGAAGAAAGATGAAACAAGGGAGAAAGATGAGAAATATGGAATAAGGGGAG
AAAGATGTAACAAAGGGAGAAAGATAGAACAAAGGAAAGGAGGAGAGAAAACGGAGAAATGGAGG
AGAGAAAATGTTGAAAGAGAAAGGAGGAAAGAGGAAAGGAGCATAGAGGAAAAAGGAGGAATTAC
GAGAATCTGGGAGGGAGTAAACGAGCTAGAGGAGGAATGAACCGAGAGGAGGGATTAAAACACGT
GACAGATAAGAGGAACGGAGTAAGGAGTAGAACAAAGACTAAATAATAGAAGGTCAAATGAAACG
ATCAATGCCATTGACAATGGAAGAAATGCAGCCATCGACAATCACCGCTAAACGCACAATCCAGG
GGAAATCCAACCTCCATGAAACAAACTGGGATCTCCTCCACTACAAAACCTACCATCTATCTCAT
AAGTCGTCATATTAGCGCGTACGCGGGTCATTATATACAATCGTT
Found at i:83682 original size:19 final size:18
Alignment explanation
Indices: 83645--83696 Score: 59
Period size: 19 Copynumber: 2.8 Consensus size: 18
83635 GAAAGAGAGA
* * *
83645 AAGGAAGGAATATGTAAC
1 AAGGAAGAAAGATGAAAC
83663 AAGAGAAGAAAGATGAAAC
1 AAG-GAAGAAAGATGAAAC
*
83682 AAGGGAGAAAGATGA
1 AAGGAAGAAAGATGA
83697 GAAATATGGA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
18 14 0.48
19 15 0.52
ACGTcount: A:0.56, C:0.04, G:0.31, T:0.10
Consensus pattern (18 bp):
AAGGAAGAAAGATGAAAC
Left flanking sequence: Indices 83145 -- 83644
GCTGTAGGCCTCAGCCGTGGCGACGCCGGTGGTGGCAAAATATCCCGATAAGAAAAGAAGAATTA
CAGGACGATGAAGAATTACAGGAAAATGTCACGAATTACAGGAGACATGCTGAAAGGCTTGGCCG
TCAGCTTGGCCGTGGGGTCAGCCCATGACACATGGGCAAGCTGGCTAAGCCACTACGTAATTGAT
CTGTCACTGAGATCGTGACACAAAACCCCACAAAGGAGGGTGTCATCGCAAAGCCAGGGGAGAAG
CCCCACAAAGCGCGAGAGGTTCGCCAGTGCATTTGTGGCACGGGTGGGGTGTGTTGGTGGAGGGC
TTTGTGGCTGGTGGTCCGCAGATCTAAAACCAGGGGAAGAGGGGTAGACAGGGGAAGAGGGGTAG
GGGAAGGAGGGAATCAGGGACGGTATGAGGAGGGAAGGAAAAGAGAAAGGAAGAGAGAGTTAAAG
GAAGAAAGGAAGAAAGAAAGAAAGGGAGAAAGAGAGAAAGAGAGA
Right flanking sequence: Indices 83697 -- 84196
GAAATATGGAATAAGGGGAGAAAGATGTAACAAAGGGAGAAAGATAGAACAAAGGAAAGGAGGAG
AGAAAACGGAGAAATGGAGGAGAGAAAATGTTGAAAGAGAAAGGAGGAAAGAGGAAAGGAGCATA
GAGGAAAAAGGAGGAATTACGAGAATCTGGGAGGGAGTAAACGAGCTAGAGGAGGAATGAACCGA
GAGGAGGGATTAAAACACGTGACAGATAAGAGGAACGGAGTAAGGAGTAGAACAAAGACTAAATA
ATAGAAGGTCAAATGAAACGATCAATGCCATTGACAATGGAAGAAATGCAGCCATCGACAATCAC
CGCTAAACGCACAATCCAGGGGAAATCCAACCTCCATGAAACAAACTGGGATCTCCTCCACTACA
AAACCTACCATCTATCTCATAAGTCGTCATATTAGCGCGTACGCGGGTCATTATATACAATCGTT
CGTGAACTACTCGTGCACTAGCACGGCACTAGCACCGCACTAGCA
Found at i:83693 original size:27 final size:28
Alignment explanation
Indices: 83669--83723 Score: 76
Period size: 27 Copynumber: 2.0 Consensus size: 28
83659 TAACAAGAGA
83669 AGAAAGATGAAACAA-GGGAGAAAGATG
1 AGAAAGATGAAACAAGGGGAGAAAGATG
* * *
83696 AGAAATATGGAATAAGGGGAGAAAGATG
1 AGAAAGATGAAACAAGGGGAGAAAGATG
83724 TAACAAAGGG
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
27 12 0.50
28 12 0.50
ACGTcount: A:0.53, C:0.02, G:0.35, T:0.11
Consensus pattern (28 bp):
AGAAAGATGAAACAAGGGGAGAAAGATG
Left flanking sequence: Indices 83169 -- 83668
GCCGGTGGTGGCAAAATATCCCGATAAGAAAAGAAGAATTACAGGACGATGAAGAATTACAGGAA
AATGTCACGAATTACAGGAGACATGCTGAAAGGCTTGGCCGTCAGCTTGGCCGTGGGGTCAGCCC
ATGACACATGGGCAAGCTGGCTAAGCCACTACGTAATTGATCTGTCACTGAGATCGTGACACAAA
ACCCCACAAAGGAGGGTGTCATCGCAAAGCCAGGGGAGAAGCCCCACAAAGCGCGAGAGGTTCGC
CAGTGCATTTGTGGCACGGGTGGGGTGTGTTGGTGGAGGGCTTTGTGGCTGGTGGTCCGCAGATC
TAAAACCAGGGGAAGAGGGGTAGACAGGGGAAGAGGGGTAGGGGAAGGAGGGAATCAGGGACGGT
ATGAGGAGGGAAGGAAAAGAGAAAGGAAGAGAGAGTTAAAGGAAGAAAGGAAGAAAGAAAGAAAG
GGAGAAAGAGAGAAAGAGAGAAAGGAAGGAATATGTAACAAGAGA
Right flanking sequence: Indices 83724 -- 84223
TAACAAAGGGAGAAAGATAGAACAAAGGAAAGGAGGAGAGAAAACGGAGAAATGGAGGAGAGAAA
ATGTTGAAAGAGAAAGGAGGAAAGAGGAAAGGAGCATAGAGGAAAAAGGAGGAATTACGAGAATC
TGGGAGGGAGTAAACGAGCTAGAGGAGGAATGAACCGAGAGGAGGGATTAAAACACGTGACAGAT
AAGAGGAACGGAGTAAGGAGTAGAACAAAGACTAAATAATAGAAGGTCAAATGAAACGATCAATG
CCATTGACAATGGAAGAAATGCAGCCATCGACAATCACCGCTAAACGCACAATCCAGGGGAAATC
CAACCTCCATGAAACAAACTGGGATCTCCTCCACTACAAAACCTACCATCTATCTCATAAGTCGT
CATATTAGCGCGTACGCGGGTCATTATATACAATCGTTCGTGAACTACTCGTGCACTAGCACGGC
ACTAGCACCGCACTAGCACCGCACGGCGTTCACGGGCTTCATCCC
Found at i:83719 original size:19 final size:19
Alignment explanation
Indices: 83695--83751 Score: 69
Period size: 19 Copynumber: 3.0 Consensus size: 19
83685 GGAGAAAGAT
* * *
83695 GAGAAATATGGAATAAGGG
1 GAGAAAGATGGAACAAAGG
*
83714 GAGAAAGATGTAACAAAGG
1 GAGAAAGATGGAACAAAGG
*
83733 GAGAAAGATAGAACAAAGG
1 GAGAAAGATGGAACAAAGG
83752 AAAGGAGGAG
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
19 32 1.00
ACGTcount: A:0.53, C:0.04, G:0.33, T:0.11
Consensus pattern (19 bp):
GAGAAAGATGGAACAAAGG
Left flanking sequence: Indices 83195 -- 83694
AGAAAAGAAGAATTACAGGACGATGAAGAATTACAGGAAAATGTCACGAATTACAGGAGACATGC
TGAAAGGCTTGGCCGTCAGCTTGGCCGTGGGGTCAGCCCATGACACATGGGCAAGCTGGCTAAGC
CACTACGTAATTGATCTGTCACTGAGATCGTGACACAAAACCCCACAAAGGAGGGTGTCATCGCA
AAGCCAGGGGAGAAGCCCCACAAAGCGCGAGAGGTTCGCCAGTGCATTTGTGGCACGGGTGGGGT
GTGTTGGTGGAGGGCTTTGTGGCTGGTGGTCCGCAGATCTAAAACCAGGGGAAGAGGGGTAGACA
GGGGAAGAGGGGTAGGGGAAGGAGGGAATCAGGGACGGTATGAGGAGGGAAGGAAAAGAGAAAGG
AAGAGAGAGTTAAAGGAAGAAAGGAAGAAAGAAAGAAAGGGAGAAAGAGAGAAAGAGAGAAAGGA
AGGAATATGTAACAAGAGAAGAAAGATGAAACAAGGGAGAAAGAT
Right flanking sequence: Indices 83752 -- 84251
AAAGGAGGAGAGAAAACGGAGAAATGGAGGAGAGAAAATGTTGAAAGAGAAAGGAGGAAAGAGGA
AAGGAGCATAGAGGAAAAAGGAGGAATTACGAGAATCTGGGAGGGAGTAAACGAGCTAGAGGAGG
AATGAACCGAGAGGAGGGATTAAAACACGTGACAGATAAGAGGAACGGAGTAAGGAGTAGAACAA
AGACTAAATAATAGAAGGTCAAATGAAACGATCAATGCCATTGACAATGGAAGAAATGCAGCCAT
CGACAATCACCGCTAAACGCACAATCCAGGGGAAATCCAACCTCCATGAAACAAACTGGGATCTC
CTCCACTACAAAACCTACCATCTATCTCATAAGTCGTCATATTAGCGCGTACGCGGGTCATTATA
TACAATCGTTCGTGAACTACTCGTGCACTAGCACGGCACTAGCACCGCACTAGCACCGCACGGCG
TTCACGGGCTTCATCCCCATGCGGTAGCTCAACTTGTCAAACACA
Found at i:83765 original size:47 final size:46
Alignment explanation
Indices: 83669--83766 Score: 112
Period size: 47 Copynumber: 2.1 Consensus size: 46
83659 TAACAAGAGA
* *
83669 AGAAAGATGAAACAAGGGAGAAAGATGAGAAATATGGAATAAGGGG
1 AGAAAGATGAAACAAGGGAGAAAGATGAGAAATAAGGAATAAGGAG
*
83715 AGAAAGATGTAACAAAGGGAGAAAGAT-AGAACA-AAGGAA-AGGAGGAG
1 AGAAAGATGAAAC-AAGGGAGAAAGATGAGAA-ATAAGGAATA--AGGAG
83762 AGAAA
1 AGAAA
83767 ACGGAGAAAT
Statistics
Matches: 45, Mismatches: 3, Indels: 7
0.82 0.05 0.13
Matches are distributed among these distances:
45 1 0.02
46 21 0.47
47 23 0.51
ACGTcount: A:0.55, C:0.03, G:0.34, T:0.08
Consensus pattern (46 bp):
AGAAAGATGAAACAAGGGAGAAAGATGAGAAATAAGGAATAAGGAG
Left flanking sequence: Indices 83169 -- 83668
GCCGGTGGTGGCAAAATATCCCGATAAGAAAAGAAGAATTACAGGACGATGAAGAATTACAGGAA
AATGTCACGAATTACAGGAGACATGCTGAAAGGCTTGGCCGTCAGCTTGGCCGTGGGGTCAGCCC
ATGACACATGGGCAAGCTGGCTAAGCCACTACGTAATTGATCTGTCACTGAGATCGTGACACAAA
ACCCCACAAAGGAGGGTGTCATCGCAAAGCCAGGGGAGAAGCCCCACAAAGCGCGAGAGGTTCGC
CAGTGCATTTGTGGCACGGGTGGGGTGTGTTGGTGGAGGGCTTTGTGGCTGGTGGTCCGCAGATC
TAAAACCAGGGGAAGAGGGGTAGACAGGGGAAGAGGGGTAGGGGAAGGAGGGAATCAGGGACGGT
ATGAGGAGGGAAGGAAAAGAGAAAGGAAGAGAGAGTTAAAGGAAGAAAGGAAGAAAGAAAGAAAG
GGAGAAAGAGAGAAAGAGAGAAAGGAAGGAATATGTAACAAGAGA
Right flanking sequence: Indices 83767 -- 84266
ACGGAGAAATGGAGGAGAGAAAATGTTGAAAGAGAAAGGAGGAAAGAGGAAAGGAGCATAGAGGA
AAAAGGAGGAATTACGAGAATCTGGGAGGGAGTAAACGAGCTAGAGGAGGAATGAACCGAGAGGA
GGGATTAAAACACGTGACAGATAAGAGGAACGGAGTAAGGAGTAGAACAAAGACTAAATAATAGA
AGGTCAAATGAAACGATCAATGCCATTGACAATGGAAGAAATGCAGCCATCGACAATCACCGCTA
AACGCACAATCCAGGGGAAATCCAACCTCCATGAAACAAACTGGGATCTCCTCCACTACAAAACC
TACCATCTATCTCATAAGTCGTCATATTAGCGCGTACGCGGGTCATTATATACAATCGTTCGTGA
ACTACTCGTGCACTAGCACGGCACTAGCACCGCACTAGCACCGCACGGCGTTCACGGGCTTCATC
CCCATGCGGTAGCTCAACTTGTCAAACACAAACCGGCCCACGCCC
Found at i:83818 original size:15 final size:15
Alignment explanation
Indices: 83794--83833 Score: 55
Period size: 15 Copynumber: 2.7 Consensus size: 15
83784 AGAAAATGTT
83794 GAAAGA-GAAAGGAG
1 GAAAGAGGAAAGGAG
83808 GAAAGAGGAAAGGAG
1 GAAAGAGGAAAGGAG
* *
83823 CATAGAGGAAA
1 GAAAGAGGAAA
83834 AAGGAGGAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
14 6 0.26
15 17 0.74
ACGTcount: A:0.55, C:0.03, G:0.40, T:0.03
Consensus pattern (15 bp):
GAAAGAGGAAAGGAG
Left flanking sequence: Indices 83294 -- 83793
AGCCCATGACACATGGGCAAGCTGGCTAAGCCACTACGTAATTGATCTGTCACTGAGATCGTGAC
ACAAAACCCCACAAAGGAGGGTGTCATCGCAAAGCCAGGGGAGAAGCCCCACAAAGCGCGAGAGG
TTCGCCAGTGCATTTGTGGCACGGGTGGGGTGTGTTGGTGGAGGGCTTTGTGGCTGGTGGTCCGC
AGATCTAAAACCAGGGGAAGAGGGGTAGACAGGGGAAGAGGGGTAGGGGAAGGAGGGAATCAGGG
ACGGTATGAGGAGGGAAGGAAAAGAGAAAGGAAGAGAGAGTTAAAGGAAGAAAGGAAGAAAGAAA
GAAAGGGAGAAAGAGAGAAAGAGAGAAAGGAAGGAATATGTAACAAGAGAAGAAAGATGAAACAA
GGGAGAAAGATGAGAAATATGGAATAAGGGGAGAAAGATGTAACAAAGGGAGAAAGATAGAACAA
AGGAAAGGAGGAGAGAAAACGGAGAAATGGAGGAGAGAAAATGTT
Right flanking sequence: Indices 83834 -- 84333
AAGGAGGAATTACGAGAATCTGGGAGGGAGTAAACGAGCTAGAGGAGGAATGAACCGAGAGGAGG
GATTAAAACACGTGACAGATAAGAGGAACGGAGTAAGGAGTAGAACAAAGACTAAATAATAGAAG
GTCAAATGAAACGATCAATGCCATTGACAATGGAAGAAATGCAGCCATCGACAATCACCGCTAAA
CGCACAATCCAGGGGAAATCCAACCTCCATGAAACAAACTGGGATCTCCTCCACTACAAAACCTA
CCATCTATCTCATAAGTCGTCATATTAGCGCGTACGCGGGTCATTATATACAATCGTTCGTGAAC
TACTCGTGCACTAGCACGGCACTAGCACCGCACTAGCACCGCACGGCGTTCACGGGCTTCATCCC
CATGCGGTAGCTCAACTTGTCAAACACAAACCGGCCCACGCCCAGGCCCACCACCACAGCGAAAA
AGTAGGTCAACGTGTAGGTCATCACCGCCAACATGAGTGCGTAGC
Found at i:84180 original size:11 final size:11
Alignment explanation
Indices: 84166--84202 Score: 65
Period size: 11 Copynumber: 3.4 Consensus size: 11
84156 AACTACTCGT
*
84166 GCACTAGCACG
1 GCACTAGCACC
84177 GCACTAGCACC
1 GCACTAGCACC
84188 GCACTAGCACC
1 GCACTAGCACC
84199 GCAC
1 GCAC
84203 GGCGTTCACG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
11 25 1.00
ACGTcount: A:0.27, C:0.43, G:0.22, T:0.08
Consensus pattern (11 bp):
GCACTAGCACC
Left flanking sequence: Indices 83666 -- 84165
AGAAGAAAGATGAAACAAGGGAGAAAGATGAGAAATATGGAATAAGGGGAGAAAGATGTAACAAA
GGGAGAAAGATAGAACAAAGGAAAGGAGGAGAGAAAACGGAGAAATGGAGGAGAGAAAATGTTGA
AAGAGAAAGGAGGAAAGAGGAAAGGAGCATAGAGGAAAAAGGAGGAATTACGAGAATCTGGGAGG
GAGTAAACGAGCTAGAGGAGGAATGAACCGAGAGGAGGGATTAAAACACGTGACAGATAAGAGGA
ACGGAGTAAGGAGTAGAACAAAGACTAAATAATAGAAGGTCAAATGAAACGATCAATGCCATTGA
CAATGGAAGAAATGCAGCCATCGACAATCACCGCTAAACGCACAATCCAGGGGAAATCCAACCTC
CATGAAACAAACTGGGATCTCCTCCACTACAAAACCTACCATCTATCTCATAAGTCGTCATATTA
GCGCGTACGCGGGTCATTATATACAATCGTTCGTGAACTACTCGT
Right flanking sequence: Indices 84203 -- 84702
GGCGTTCACGGGCTTCATCCCCATGCGGTAGCTCAACTTGTCAAACACAAACCGGCCCACGCCCA
GGCCCACCACCACAGCGAAAAAGTAGGTCAACGTGTAGGTCATCACCGCCAACATGAGTGCGTAG
CTCAACAACTCGGGCAACACCAGCAACGCCAACCGCACCGCGTCCCGGAACAACAGCAGCACCAC
CAGCGGCGCCCCCAGCAGCGCCAGCCCCACCTCGGTGCGCTCGGCCGCCACAATCTCCTCGTCCT
TGTCGGAAAACGGGTGGTGCGCGGTGATGGCCGGGGCCGCGGTGCGCACATACACCGGGTTGTGC
CACACCCGGGTCTCCAAGTAGGTGCGCAAGAACTCCAACGCCCGGCCAATGAAGGCCACCACGAA
GAGCAACACAAAAATGCCAAACGCCTCGGCCTTCGTCAGGGCCGTAAGCTTCTTGAAAAGCACCG
GGTAGTCCTTGAACTCGGTGGTGAACCACATGTGCATCCCCATCA
Found at i:84870 original size:24 final size:24
Alignment explanation
Indices: 84843--84904 Score: 115
Period size: 24 Copynumber: 2.6 Consensus size: 24
84833 CGTTTTCGAT
*
84843 GCCATCAGGGCCATCAGGCTCATG
1 GCCATCAGGCCCATCAGGCTCATG
84867 GCCATCAGGCCCATCAGGCTCATG
1 GCCATCAGGCCCATCAGGCTCATG
84891 GCCATCAGGCCCAT
1 GCCATCAGGCCCAT
84905 ATCGTGGCCC
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 37 1.00
ACGTcount: A:0.21, C:0.37, G:0.26, T:0.16
Consensus pattern (24 bp):
GCCATCAGGCCCATCAGGCTCATG
Left flanking sequence: Indices 84343 -- 84842
CGGGCAACACCAGCAACGCCAACCGCACCGCGTCCCGGAACAACAGCAGCACCACCAGCGGCGCC
CCCAGCAGCGCCAGCCCCACCTCGGTGCGCTCGGCCGCCACAATCTCCTCGTCCTTGTCGGAAAA
CGGGTGGTGCGCGGTGATGGCCGGGGCCGCGGTGCGCACATACACCGGGTTGTGCCACACCCGGG
TCTCCAAGTAGGTGCGCAAGAACTCCAACGCCCGGCCAATGAAGGCCACCACGAAGAGCAACACA
AAAATGCCAAACGCCTCGGCCTTCGTCAGGGCCGTAAGCTTCTTGAAAAGCACCGGGTAGTCCTT
GAACTCGGTGGTGAACCACATGTGCATCCCCATCATGTCGTGGTCCATGCCCCCCATGTCGCTGT
TGGCGGACATCCCGCCGCCGTCCATCATCCCGTGCATCAGGTGGTCCATCCCAGCCATCGCAGTG
GCCGTCTCCAGGGCCGCCAGAGCAATGGTCAGCATCGTTTTCGAT
Right flanking sequence: Indices 84905 -- 85404
ATCGTGGCCCATGGCCGCGTGGTCCATGGTGGCGTGGTTCATGGTAGCGTGGTCCATCAGCATCA
GACTCATATCCATTTTGGTGGTCAATGGGTTTTGTGGCCGGGTGTGTGTTCGTTTTAAACTGTTA
GGCTGCCGAGCCCGTGAGCAAGTTTGATTACCCGATTCGGCCACAGGTGCATATCTGAGAAGATA
TCGTCGACGATTGGGAACGAAAAGTGCTCACGTGCCTGGGCACGAGCAAAACCCGGGCACGGAGG
TGGGCACGGGGGTGGGCTCGGAGGGTGGGCTCGATCGGGGTCTGCGTCGAGGCGGTGGCCAGATA
GGGGGGGTGTGGTGGGGAGGGGTGGAGGTGGAGTGGTGGTAGTGGAGTGGTGAAGCTGGAGTGGT
GAAGCTGGAGTGGTGGTGAGCCCGTGGTGGAGCCTATGGTTGTGGAGCCCGTGGTCGAGTCTGGT
GGTAAAGCCAATGGTTGTGAAGCCCGTGTAGATTCTGGTTGTGAG
Found at i:84871 original size:15 final size:15
Alignment explanation
Indices: 84851--84900 Score: 58
Period size: 15 Copynumber: 3.7 Consensus size: 15
84841 ATGCCATCAG
84851 GGCCATCAGGCTCAT
1 GGCCATCAGGCTCAT
84866 GGCCATCAGG--C--
1 GGCCATCAGGCTCAT
84877 --CCATCAGGCTCAT
1 GGCCATCAGGCTCAT
84890 GGCCATCAGGC
1 GGCCATCAGGC
84901 CCATATCGTG
Statistics
Matches: 29, Mismatches: 0, Indels: 12
0.71 0.00 0.29
Matches are distributed among these distances:
9 8 0.28
11 1 0.03
13 1 0.03
15 19 0.66
ACGTcount: A:0.20, C:0.36, G:0.28, T:0.16
Consensus pattern (15 bp):
GGCCATCAGGCTCAT
Left flanking sequence: Indices 84351 -- 84850
ACCAGCAACGCCAACCGCACCGCGTCCCGGAACAACAGCAGCACCACCAGCGGCGCCCCCAGCAG
CGCCAGCCCCACCTCGGTGCGCTCGGCCGCCACAATCTCCTCGTCCTTGTCGGAAAACGGGTGGT
GCGCGGTGATGGCCGGGGCCGCGGTGCGCACATACACCGGGTTGTGCCACACCCGGGTCTCCAAG
TAGGTGCGCAAGAACTCCAACGCCCGGCCAATGAAGGCCACCACGAAGAGCAACACAAAAATGCC
AAACGCCTCGGCCTTCGTCAGGGCCGTAAGCTTCTTGAAAAGCACCGGGTAGTCCTTGAACTCGG
TGGTGAACCACATGTGCATCCCCATCATGTCGTGGTCCATGCCCCCCATGTCGCTGTTGGCGGAC
ATCCCGCCGCCGTCCATCATCCCGTGCATCAGGTGGTCCATCCCAGCCATCGCAGTGGCCGTCTC
CAGGGCCGCCAGAGCAATGGTCAGCATCGTTTTCGATGCCATCAG
Right flanking sequence: Indices 84901 -- 85400
CCATATCGTGGCCCATGGCCGCGTGGTCCATGGTGGCGTGGTTCATGGTAGCGTGGTCCATCAGC
ATCAGACTCATATCCATTTTGGTGGTCAATGGGTTTTGTGGCCGGGTGTGTGTTCGTTTTAAACT
GTTAGGCTGCCGAGCCCGTGAGCAAGTTTGATTACCCGATTCGGCCACAGGTGCATATCTGAGAA
GATATCGTCGACGATTGGGAACGAAAAGTGCTCACGTGCCTGGGCACGAGCAAAACCCGGGCACG
GAGGTGGGCACGGGGGTGGGCTCGGAGGGTGGGCTCGATCGGGGTCTGCGTCGAGGCGGTGGCCA
GATAGGGGGGGTGTGGTGGGGAGGGGTGGAGGTGGAGTGGTGGTAGTGGAGTGGTGAAGCTGGAG
TGGTGAAGCTGGAGTGGTGGTGAGCCCGTGGTGGAGCCTATGGTTGTGGAGCCCGTGGTCGAGTC
TGGTGGTAAAGCCAATGGTTGTGAAGCCCGTGTAGATTCTGGTTG
Found at i:84931 original size:15 final size:15
Alignment explanation
Indices: 84907--84961 Score: 65
Period size: 15 Copynumber: 3.7 Consensus size: 15
84897 AGGCCCATAT
* **
84907 CGTGGCCCATGGCCG
1 CGTGGTCCATGGTAG
*
84922 CGTGGTCCATGGTGG
1 CGTGGTCCATGGTAG
*
84937 CGTGGTTCATGGTAG
1 CGTGGTCCATGGTAG
84952 CGTGGTCCAT
1 CGTGGTCCAT
84962 CAGCATCAGA
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
15 34 1.00
ACGTcount: A:0.09, C:0.25, G:0.40, T:0.25
Consensus pattern (15 bp):
CGTGGTCCATGGTAG
Left flanking sequence: Indices 84407 -- 84906
CCCCAGCAGCGCCAGCCCCACCTCGGTGCGCTCGGCCGCCACAATCTCCTCGTCCTTGTCGGAAA
ACGGGTGGTGCGCGGTGATGGCCGGGGCCGCGGTGCGCACATACACCGGGTTGTGCCACACCCGG
GTCTCCAAGTAGGTGCGCAAGAACTCCAACGCCCGGCCAATGAAGGCCACCACGAAGAGCAACAC
AAAAATGCCAAACGCCTCGGCCTTCGTCAGGGCCGTAAGCTTCTTGAAAAGCACCGGGTAGTCCT
TGAACTCGGTGGTGAACCACATGTGCATCCCCATCATGTCGTGGTCCATGCCCCCCATGTCGCTG
TTGGCGGACATCCCGCCGCCGTCCATCATCCCGTGCATCAGGTGGTCCATCCCAGCCATCGCAGT
GGCCGTCTCCAGGGCCGCCAGAGCAATGGTCAGCATCGTTTTCGATGCCATCAGGGCCATCAGGC
TCATGGCCATCAGGCCCATCAGGCTCATGGCCATCAGGCCCATAT
Right flanking sequence: Indices 84962 -- 85461
CAGCATCAGACTCATATCCATTTTGGTGGTCAATGGGTTTTGTGGCCGGGTGTGTGTTCGTTTTA
AACTGTTAGGCTGCCGAGCCCGTGAGCAAGTTTGATTACCCGATTCGGCCACAGGTGCATATCTG
AGAAGATATCGTCGACGATTGGGAACGAAAAGTGCTCACGTGCCTGGGCACGAGCAAAACCCGGG
CACGGAGGTGGGCACGGGGGTGGGCTCGGAGGGTGGGCTCGATCGGGGTCTGCGTCGAGGCGGTG
GCCAGATAGGGGGGGTGTGGTGGGGAGGGGTGGAGGTGGAGTGGTGGTAGTGGAGTGGTGAAGCT
GGAGTGGTGAAGCTGGAGTGGTGGTGAGCCCGTGGTGGAGCCTATGGTTGTGGAGCCCGTGGTCG
AGTCTGGTGGTAAAGCCAATGGTTGTGAAGCCCGTGTAGATTCTGGTTGTGAGCCCGCGCCGTAT
TAGTAGACTACCACTGGGTAGAGCCCGCAGTAGCGTGGACAACGA
Found at i:85197 original size:13 final size:13
Alignment explanation
Indices: 85154--85194 Score: 59
Period size: 12 Copynumber: 3.3 Consensus size: 13
85144 AGCAAAACCC
85154 GGGCACGGA-GGT
1 GGGCACGGAGGGT
85166 GGGCACGG-GGGT
1 GGGCACGGAGGGT
*
85178 GGGCTCGGAGGGT
1 GGGCACGGAGGGT
85191 GGGC
1 GGGC
85195 TCGATCGGGG
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
12 18 0.69
13 8 0.31
ACGTcount: A:0.10, C:0.17, G:0.63, T:0.10
Consensus pattern (13 bp):
GGGCACGGAGGGT
Left flanking sequence: Indices 84654 -- 85153
ACCGGGTAGTCCTTGAACTCGGTGGTGAACCACATGTGCATCCCCATCATGTCGTGGTCCATGCC
CCCCATGTCGCTGTTGGCGGACATCCCGCCGCCGTCCATCATCCCGTGCATCAGGTGGTCCATCC
CAGCCATCGCAGTGGCCGTCTCCAGGGCCGCCAGAGCAATGGTCAGCATCGTTTTCGATGCCATC
AGGGCCATCAGGCTCATGGCCATCAGGCCCATCAGGCTCATGGCCATCAGGCCCATATCGTGGCC
CATGGCCGCGTGGTCCATGGTGGCGTGGTTCATGGTAGCGTGGTCCATCAGCATCAGACTCATAT
CCATTTTGGTGGTCAATGGGTTTTGTGGCCGGGTGTGTGTTCGTTTTAAACTGTTAGGCTGCCGA
GCCCGTGAGCAAGTTTGATTACCCGATTCGGCCACAGGTGCATATCTGAGAAGATATCGTCGACG
ATTGGGAACGAAAAGTGCTCACGTGCCTGGGCACGAGCAAAACCC
Right flanking sequence: Indices 85195 -- 85694
TCGATCGGGGTCTGCGTCGAGGCGGTGGCCAGATAGGGGGGGTGTGGTGGGGAGGGGTGGAGGTG
GAGTGGTGGTAGTGGAGTGGTGAAGCTGGAGTGGTGAAGCTGGAGTGGTGGTGAGCCCGTGGTGG
AGCCTATGGTTGTGGAGCCCGTGGTCGAGTCTGGTGGTAAAGCCAATGGTTGTGAAGCCCGTGTA
GATTCTGGTTGTGAGCCCGCGCCGTATTAGTAGACTACCACTGGGTAGAGCCCGCAGTAGCGTGG
ACAACGAAAAGAGTAAGAATCGTCGGACAGCCGTGCCTCGGACAGCGCCGTGCTCGGGCTGGTGG
TGGAGGTTGAACTCGCGACAGCTTTGTAGGCAACCAAACCCGCAGTAGAGTGGACAACAAAAGGA
GTAATAATCGTCGGACAACGTGCCTAGGACAACGCCGTGCCTCAGGACAGCGCCGTGCCTCGGGC
CGTGTCTCGGCTGGTGCAGTCGAATAGTAGCATTGGCCGCACCAC
Found at i:85267 original size:14 final size:14
Alignment explanation
Indices: 85245--85310 Score: 80
Period size: 14 Copynumber: 4.7 Consensus size: 14
85235 GGTGTGGTGG
* *
85245 GGAGGGGTGGAGGT
1 GGAGTGGTGGAGCT
85259 GGAGTGGTGGTAG-T
1 GGAGTGGTGG-AGCT
*
85273 GGAGTGGTGAAGCT
1 GGAGTGGTGGAGCT
*
85287 GGAGTGGTGAAGCT
1 GGAGTGGTGGAGCT
85301 GGAGTGGTGG
1 GGAGTGGTGG
85311 TGAGCCCGTG
Statistics
Matches: 47, Mismatches: 3, Indels: 4
0.87 0.06 0.07
Matches are distributed among these distances:
13 2 0.04
14 43 0.91
15 2 0.04
ACGTcount: A:0.17, C:0.03, G:0.59, T:0.21
Consensus pattern (14 bp):
GGAGTGGTGGAGCT
Left flanking sequence: Indices 84745 -- 85244
CGCCGCCGTCCATCATCCCGTGCATCAGGTGGTCCATCCCAGCCATCGCAGTGGCCGTCTCCAGG
GCCGCCAGAGCAATGGTCAGCATCGTTTTCGATGCCATCAGGGCCATCAGGCTCATGGCCATCAG
GCCCATCAGGCTCATGGCCATCAGGCCCATATCGTGGCCCATGGCCGCGTGGTCCATGGTGGCGT
GGTTCATGGTAGCGTGGTCCATCAGCATCAGACTCATATCCATTTTGGTGGTCAATGGGTTTTGT
GGCCGGGTGTGTGTTCGTTTTAAACTGTTAGGCTGCCGAGCCCGTGAGCAAGTTTGATTACCCGA
TTCGGCCACAGGTGCATATCTGAGAAGATATCGTCGACGATTGGGAACGAAAAGTGCTCACGTGC
CTGGGCACGAGCAAAACCCGGGCACGGAGGTGGGCACGGGGGTGGGCTCGGAGGGTGGGCTCGAT
CGGGGTCTGCGTCGAGGCGGTGGCCAGATAGGGGGGGTGTGGTGG
Right flanking sequence: Indices 85311 -- 85810
TGAGCCCGTGGTGGAGCCTATGGTTGTGGAGCCCGTGGTCGAGTCTGGTGGTAAAGCCAATGGTT
GTGAAGCCCGTGTAGATTCTGGTTGTGAGCCCGCGCCGTATTAGTAGACTACCACTGGGTAGAGC
CCGCAGTAGCGTGGACAACGAAAAGAGTAAGAATCGTCGGACAGCCGTGCCTCGGACAGCGCCGT
GCTCGGGCTGGTGGTGGAGGTTGAACTCGCGACAGCTTTGTAGGCAACCAAACCCGCAGTAGAGT
GGACAACAAAAGGAGTAATAATCGTCGGACAACGTGCCTAGGACAACGCCGTGCCTCAGGACAGC
GCCGTGCCTCGGGCCGTGTCTCGGCTGGTGCAGTCGAATAGTAGCATTGGCCGCACCACCATCGG
GCGGCTACTAAGGGGCGCTATTTTTACTGGCGTGCGAAGCAAGTGGTGACGACGCCATCGATAAC
TCCGGTTGGCCAGTGCGATGACCGGTGCCATTGGCCGTCGGAATT
Found at i:85633 original size:18 final size:18
Alignment explanation
Indices: 85603--85645 Score: 70
Period size: 18 Copynumber: 2.4 Consensus size: 18
85593 CGTCGGACAA
85603 CGTGCCT-AGGACAACGC
1 CGTGCCTCAGGACAACGC
*
85620 CGTGCCTCAGGACAGCGC
1 CGTGCCTCAGGACAACGC
85638 CGTGCCTC
1 CGTGCCTC
85646 GGGCCGTGTC
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
17 7 0.29
18 17 0.71
ACGTcount: A:0.16, C:0.40, G:0.30, T:0.14
Consensus pattern (18 bp):
CGTGCCTCAGGACAACGC
Left flanking sequence: Indices 85103 -- 85602
TCGACGATTGGGAACGAAAAGTGCTCACGTGCCTGGGCACGAGCAAAACCCGGGCACGGAGGTGG
GCACGGGGGTGGGCTCGGAGGGTGGGCTCGATCGGGGTCTGCGTCGAGGCGGTGGCCAGATAGGG
GGGGTGTGGTGGGGAGGGGTGGAGGTGGAGTGGTGGTAGTGGAGTGGTGAAGCTGGAGTGGTGAA
GCTGGAGTGGTGGTGAGCCCGTGGTGGAGCCTATGGTTGTGGAGCCCGTGGTCGAGTCTGGTGGT
AAAGCCAATGGTTGTGAAGCCCGTGTAGATTCTGGTTGTGAGCCCGCGCCGTATTAGTAGACTAC
CACTGGGTAGAGCCCGCAGTAGCGTGGACAACGAAAAGAGTAAGAATCGTCGGACAGCCGTGCCT
CGGACAGCGCCGTGCTCGGGCTGGTGGTGGAGGTTGAACTCGCGACAGCTTTGTAGGCAACCAAA
CCCGCAGTAGAGTGGACAACAAAAGGAGTAATAATCGTCGGACAA
Right flanking sequence: Indices 85646 -- 86145
GGGCCGTGTCTCGGCTGGTGCAGTCGAATAGTAGCATTGGCCGCACCACCATCGGGCGGCTACTA
AGGGGCGCTATTTTTACTGGCGTGCGAAGCAAGTGGTGACGACGCCATCGATAACTCCGGTTGGC
CAGTGCGATGACCGGTGCCATTGGCCGTCGGAATTGGCGCCAGAACACCGCAGAAACCGCGAAGC
CACCGCAGAAACCGCGGAGCCGCCGCCGCAGAAAGATGGCGGCCCCCCGTGCTGGACGACGGTGC
TGAGGTTGCCGCCAAATCTGGCGATGCGCTTAACCCCGAGCCTCGAAACATCCCCCCGTCCGCCT
CGAGATCTCCCGCCAGCCCCGTAGCCAACGTTCTCTGGAGCCTACAAGGCGGAGCCGAAGCCTGG
CCACCGCCACCGCCCGCGAGAACTCAGTTTTGCGCCCCGTCGCGTGGGGATGTAATTACGACGGT
TACGACAATGCAACCCAACAATCGCACCGGGCAAGCCACGCTAGC
Found at i:85874 original size:23 final size:20
Alignment explanation
Indices: 85821--85866 Score: 74
Period size: 20 Copynumber: 2.3 Consensus size: 20
85811 GGCGCCAGAA
85821 CACCGCAGAAACCGCGAAGC
1 CACCGCAGAAACCGCGAAGC
*
85841 CACCGCAGAAACCGCGGAGC
1 CACCGCAGAAACCGCGAAGC
*
85861 CGCCGC
1 CACCGC
85867 CGCAGAAAGA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.28, C:0.43, G:0.28, T:0.00
Consensus pattern (20 bp):
CACCGCAGAAACCGCGAAGC
Left flanking sequence: Indices 85321 -- 85820
GTGGAGCCTATGGTTGTGGAGCCCGTGGTCGAGTCTGGTGGTAAAGCCAATGGTTGTGAAGCCCG
TGTAGATTCTGGTTGTGAGCCCGCGCCGTATTAGTAGACTACCACTGGGTAGAGCCCGCAGTAGC
GTGGACAACGAAAAGAGTAAGAATCGTCGGACAGCCGTGCCTCGGACAGCGCCGTGCTCGGGCTG
GTGGTGGAGGTTGAACTCGCGACAGCTTTGTAGGCAACCAAACCCGCAGTAGAGTGGACAACAAA
AGGAGTAATAATCGTCGGACAACGTGCCTAGGACAACGCCGTGCCTCAGGACAGCGCCGTGCCTC
GGGCCGTGTCTCGGCTGGTGCAGTCGAATAGTAGCATTGGCCGCACCACCATCGGGCGGCTACTA
AGGGGCGCTATTTTTACTGGCGTGCGAAGCAAGTGGTGACGACGCCATCGATAACTCCGGTTGGC
CAGTGCGATGACCGGTGCCATTGGCCGTCGGAATTGGCGCCAGAA
Right flanking sequence: Indices 85867 -- 86366
CGCAGAAAGATGGCGGCCCCCCGTGCTGGACGACGGTGCTGAGGTTGCCGCCAAATCTGGCGATG
CGCTTAACCCCGAGCCTCGAAACATCCCCCCGTCCGCCTCGAGATCTCCCGCCAGCCCCGTAGCC
AACGTTCTCTGGAGCCTACAAGGCGGAGCCGAAGCCTGGCCACCGCCACCGCCCGCGAGAACTCA
GTTTTGCGCCCCGTCGCGTGGGGATGTAATTACGACGGTTACGACAATGCAACCCAACAATCGCA
CCGGGCAAGCCACGCTAGCAAAACAGCAGCGAACCAGGTTCACCCCGGACACCCTCCAGCAGCCG
TGTAAAAATACCACCCCTGCAACCAGCTTGCCTCACGGGCGAATCTCCGCCCCACCACTCGCGGT
CCCATCGCACAGGAGGCTAGATGCAACCGGCATGGACCCTGTGATCACGCCACTCTTTTTGTCGG
AAAATCCTGCGGGCCTCTGCAACCAACATCTCCCTTGACGGGAGT
Found at i:90824 original size:19 final size:19
Alignment explanation
Indices: 90784--90826 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
90774 CCCTTCCACA
* *
90784 TTCTCCCGTCTTCTCGTAT
1 TTCTCCCGTCTCCACGTAT
90803 TTCTCCCTGTCTCCACGT-T
1 TTCTCCC-GTCTCCACGTAT
90822 TTCTC
1 TTCTC
90827 TCCACCTACT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
19 13 0.62
20 8 0.38
ACGTcount: A:0.05, C:0.40, G:0.09, T:0.47
Consensus pattern (19 bp):
TTCTCCCGTCTCCACGTAT
Left flanking sequence: Indices 90284 -- 90783
GGACAAACGCGCACGAGGTTGCCTAATCGGGCGGAGGAGACGACGAGGCATGGAGGGGAAGGGAG
GGGTGGTTGCGGGTGGCGAAGCAGGGTGTGGGTGGCGGCCCACAGGTGATCGCGGTGGTCACGCG
GGCGGTGGGGTAGTGTGGCCGCTGTTGTGAGGTGGTTTTGTGGCGTTTTCCGGGTGGAACAGGAC
GTGTCGCGGGTAGGGGCCGGGAGTATCGGGTGGACAGGTAAAAAGAAGGAGTCAAGGAGTAGAAG
GGGCAAAGAGTAAAGGGGGTTGTAGGGGTAGGGGTAGCAAACGATCAGCCGAGCGGGTGGACCGG
TGTTCGATATTGGTTGCTTTTACGCGGTTAACGGTCTGTTGTCAGGTGACGGTCTTGTGACCGCA
ATAGGCTCTGGACGGGTCAAAGGGTTTATAGGTAGAAGACGCCGTGTTTATTGCTTACTCTCTTG
ACTACGTGATTCTCCTCTTCTCTACCCGAGTTTCTCCCTTCCACA
Right flanking sequence: Indices 90827 -- 91326
TCCACCTACTTTTCCTACTTTTTTCTACTTTTTCTACTTTTTCTACTTTTCTACTTTTCTACTTT
CCTACTTTTTCTTGCATTTTCGCAACCAATTGTAAAACCAATCGTAAATGGGAACCTGGGGAGTA
CACCCGTTCGAAAGCGACCTGGCATTGGACTTCTGGTGCACGGTGGAGCGGGCACTGGGGATCTC
CTCCAAGGAGCGAGTGTCGGAGATTGTCCGTGTTGTAAACAGCGTCCACAAGGCCAAGCTCCTCG
ACGACTACGAGACGTCGGAGTTGCTCATTGTCGTGGTGCTCACCATTGCGTTCACGGACCGGGCG
TGGATCGCAGGCTACCAGGGGATGAACGACAGCTACAAAAAAGACATCACTGCGATTGTGGACGC
GGACCAGCCCGAGTGGGACGCCACGATGGCGGGCCAGGAGGGGTTCCTTCGCAAGGCGAGCGAGT
GTATCGACAAGTGTGTTGGCGGGGGTTCCGAGTCGGCGGACCTCT
Found at i:90845 original size:9 final size:9
Alignment explanation
Indices: 90831--90900 Score: 83
Period size: 9 Copynumber: 8.0 Consensus size: 9
90821 TTTCTCTCCA
90831 CCTACTTTT
1 CCTACTTTT
90840 CCTACTTTTT
1 CCTAC-TTTT
*
90850 TCTACTTTT
1 CCTACTTTT
*
90859 TCTACTTTT
1 CCTACTTTT
*
90868 TCTACTTTT
1 CCTACTTTT
90877 -CTACTTTT
1 CCTACTTTT
90885 -CTAC-TTT
1 CCTACTTTT
90892 CCTACTTTT
1 CCTACTTTT
90901 TCTTGCATTT
Statistics
Matches: 57, Mismatches: 1, Indels: 6
0.89 0.02 0.09
Matches are distributed among these distances:
7 3 0.05
8 16 0.28
9 30 0.53
10 8 0.14
ACGTcount: A:0.11, C:0.27, G:0.00, T:0.61
Consensus pattern (9 bp):
CCTACTTTT
Left flanking sequence: Indices 90331 -- 90830
GCATGGAGGGGAAGGGAGGGGTGGTTGCGGGTGGCGAAGCAGGGTGTGGGTGGCGGCCCACAGGT
GATCGCGGTGGTCACGCGGGCGGTGGGGTAGTGTGGCCGCTGTTGTGAGGTGGTTTTGTGGCGTT
TTCCGGGTGGAACAGGACGTGTCGCGGGTAGGGGCCGGGAGTATCGGGTGGACAGGTAAAAAGAA
GGAGTCAAGGAGTAGAAGGGGCAAAGAGTAAAGGGGGTTGTAGGGGTAGGGGTAGCAAACGATCA
GCCGAGCGGGTGGACCGGTGTTCGATATTGGTTGCTTTTACGCGGTTAACGGTCTGTTGTCAGGT
GACGGTCTTGTGACCGCAATAGGCTCTGGACGGGTCAAAGGGTTTATAGGTAGAAGACGCCGTGT
TTATTGCTTACTCTCTTGACTACGTGATTCTCCTCTTCTCTACCCGAGTTTCTCCCTTCCACATT
CTCCCGTCTTCTCGTATTTCTCCCTGTCTCCACGTTTTCTCTCCA
Right flanking sequence: Indices 90901 -- 91400
TCTTGCATTTTCGCAACCAATTGTAAAACCAATCGTAAATGGGAACCTGGGGAGTACACCCGTTC
GAAAGCGACCTGGCATTGGACTTCTGGTGCACGGTGGAGCGGGCACTGGGGATCTCCTCCAAGGA
GCGAGTGTCGGAGATTGTCCGTGTTGTAAACAGCGTCCACAAGGCCAAGCTCCTCGACGACTACG
AGACGTCGGAGTTGCTCATTGTCGTGGTGCTCACCATTGCGTTCACGGACCGGGCGTGGATCGCA
GGCTACCAGGGGATGAACGACAGCTACAAAAAAGACATCACTGCGATTGTGGACGCGGACCAGCC
CGAGTGGGACGCCACGATGGCGGGCCAGGAGGGGTTCCTTCGCAAGGCGAGCGAGTGTATCGACA
AGTGTGTTGGCGGGGGTTCCGAGTCGGCGGACCTCTGGGAGGGGAACCCCGAGTGGTTGGCCAGT
TGCAACGAGTTGAAAACGAAGCTTGAGGAGTTAGAGAAATAAATG
Found at i:90867 original size:8 final size:8
Alignment explanation
Indices: 90832--90900 Score: 84
Period size: 8 Copynumber: 8.0 Consensus size: 8
90822 TTCTCTCCAC
90832 CTACTTTT
1 CTACTTTT
90840 CCTACTTTTTT
1 -CTAC--TTTT
90851 CTACTTTTT
1 CTAC-TTTT
90860 CTACTTTTT
1 CTAC-TTTT
90869 CTACTTTT
1 CTACTTTT
90877 CTACTTTT
1 CTACTTTT
*
90885 CTACTTTC
1 CTACTTTT
90893 CTACTTTT
1 CTACTTTT
90901 TCTTGCATTT
Statistics
Matches: 56, Mismatches: 2, Indels: 5
0.89 0.03 0.08
Matches are distributed among these distances:
8 26 0.46
9 22 0.39
10 4 0.07
11 4 0.07
ACGTcount: A:0.12, C:0.26, G:0.00, T:0.62
Consensus pattern (8 bp):
CTACTTTT
Left flanking sequence: Indices 90332 -- 90831
CATGGAGGGGAAGGGAGGGGTGGTTGCGGGTGGCGAAGCAGGGTGTGGGTGGCGGCCCACAGGTG
ATCGCGGTGGTCACGCGGGCGGTGGGGTAGTGTGGCCGCTGTTGTGAGGTGGTTTTGTGGCGTTT
TCCGGGTGGAACAGGACGTGTCGCGGGTAGGGGCCGGGAGTATCGGGTGGACAGGTAAAAAGAAG
GAGTCAAGGAGTAGAAGGGGCAAAGAGTAAAGGGGGTTGTAGGGGTAGGGGTAGCAAACGATCAG
CCGAGCGGGTGGACCGGTGTTCGATATTGGTTGCTTTTACGCGGTTAACGGTCTGTTGTCAGGTG
ACGGTCTTGTGACCGCAATAGGCTCTGGACGGGTCAAAGGGTTTATAGGTAGAAGACGCCGTGTT
TATTGCTTACTCTCTTGACTACGTGATTCTCCTCTTCTCTACCCGAGTTTCTCCCTTCCACATTC
TCCCGTCTTCTCGTATTTCTCCCTGTCTCCACGTTTTCTCTCCAC
Right flanking sequence: Indices 90901 -- 91400
TCTTGCATTTTCGCAACCAATTGTAAAACCAATCGTAAATGGGAACCTGGGGAGTACACCCGTTC
GAAAGCGACCTGGCATTGGACTTCTGGTGCACGGTGGAGCGGGCACTGGGGATCTCCTCCAAGGA
GCGAGTGTCGGAGATTGTCCGTGTTGTAAACAGCGTCCACAAGGCCAAGCTCCTCGACGACTACG
AGACGTCGGAGTTGCTCATTGTCGTGGTGCTCACCATTGCGTTCACGGACCGGGCGTGGATCGCA
GGCTACCAGGGGATGAACGACAGCTACAAAAAAGACATCACTGCGATTGTGGACGCGGACCAGCC
CGAGTGGGACGCCACGATGGCGGGCCAGGAGGGGTTCCTTCGCAAGGCGAGCGAGTGTATCGACA
AGTGTGTTGGCGGGGGTTCCGAGTCGGCGGACCTCTGGGAGGGGAACCCCGAGTGGTTGGCCAGT
TGCAACGAGTTGAAAACGAAGCTTGAGGAGTTAGAGAAATAAATG
Found at i:90886 original size:16 final size:17
Alignment explanation
Indices: 90832--90903 Score: 101
Period size: 16 Copynumber: 4.1 Consensus size: 17
90822 TTCTCTCCAC
90832 CTACTTTTCCTACTTTTTT
1 CTACTTTT-CTAC-TTTTT
90851 CTACTTTTTCTACTTTTT
1 CTAC-TTTTCTACTTTTT
90869 CTACTTTTCTAC-TTTT
1 CTACTTTTCTACTTTTT
*
90885 CTACTTTCCTACTTTTT
1 CTACTTTTCTACTTTTT
90902 CT
1 CT
90904 TGCATTTTCG
Statistics
Matches: 50, Mismatches: 1, Indels: 6
0.88 0.02 0.11
Matches are distributed among these distances:
16 15 0.30
17 14 0.28
18 9 0.18
19 8 0.16
20 4 0.08
ACGTcount: A:0.11, C:0.26, G:0.00, T:0.62
Consensus pattern (17 bp):
CTACTTTTCTACTTTTT
Left flanking sequence: Indices 90332 -- 90831
CATGGAGGGGAAGGGAGGGGTGGTTGCGGGTGGCGAAGCAGGGTGTGGGTGGCGGCCCACAGGTG
ATCGCGGTGGTCACGCGGGCGGTGGGGTAGTGTGGCCGCTGTTGTGAGGTGGTTTTGTGGCGTTT
TCCGGGTGGAACAGGACGTGTCGCGGGTAGGGGCCGGGAGTATCGGGTGGACAGGTAAAAAGAAG
GAGTCAAGGAGTAGAAGGGGCAAAGAGTAAAGGGGGTTGTAGGGGTAGGGGTAGCAAACGATCAG
CCGAGCGGGTGGACCGGTGTTCGATATTGGTTGCTTTTACGCGGTTAACGGTCTGTTGTCAGGTG
ACGGTCTTGTGACCGCAATAGGCTCTGGACGGGTCAAAGGGTTTATAGGTAGAAGACGCCGTGTT
TATTGCTTACTCTCTTGACTACGTGATTCTCCTCTTCTCTACCCGAGTTTCTCCCTTCCACATTC
TCCCGTCTTCTCGTATTTCTCCCTGTCTCCACGTTTTCTCTCCAC
Right flanking sequence: Indices 90904 -- 91403
TGCATTTTCGCAACCAATTGTAAAACCAATCGTAAATGGGAACCTGGGGAGTACACCCGTTCGAA
AGCGACCTGGCATTGGACTTCTGGTGCACGGTGGAGCGGGCACTGGGGATCTCCTCCAAGGAGCG
AGTGTCGGAGATTGTCCGTGTTGTAAACAGCGTCCACAAGGCCAAGCTCCTCGACGACTACGAGA
CGTCGGAGTTGCTCATTGTCGTGGTGCTCACCATTGCGTTCACGGACCGGGCGTGGATCGCAGGC
TACCAGGGGATGAACGACAGCTACAAAAAAGACATCACTGCGATTGTGGACGCGGACCAGCCCGA
GTGGGACGCCACGATGGCGGGCCAGGAGGGGTTCCTTCGCAAGGCGAGCGAGTGTATCGACAAGT
GTGTTGGCGGGGGTTCCGAGTCGGCGGACCTCTGGGAGGGGAACCCCGAGTGGTTGGCCAGTTGC
AACGAGTTGAAAACGAAGCTTGAGGAGTTAGAGAAATAAATGAAG
Found at i:91655 original size:20 final size:20
Alignment explanation
Indices: 91627--91711 Score: 82
Period size: 20 Copynumber: 4.2 Consensus size: 20
91617 GACCAAGTTG
* *
91627 TTTGTGATATGTCCTCGTTA
1 TTTGAGATATATCCTCGTTA
* * *
91647 TTTGAGATATATCCCCGATG
1 TTTGAGATATATCCTCGTTA
*
91667 TTTGA-AGTGTATCCTCGTTA
1 TTTGAGA-TATATCCTCGTTA
* *
91687 TTTGAGATGTATGCTCGTTA
1 TTTGAGATATATCCTCGTTA
91707 TTTGA
1 TTTGA
91712 AAGTGTCTTC
Statistics
Matches: 53, Mismatches: 10, Indels: 4
0.79 0.15 0.06
Matches are distributed among these distances:
19 1 0.02
20 51 0.96
21 1 0.02
ACGTcount: A:0.20, C:0.14, G:0.21, T:0.45
Consensus pattern (20 bp):
TTTGAGATATATCCTCGTTA
Left flanking sequence: Indices 91127 -- 91626
CACCATTGCGTTCACGGACCGGGCGTGGATCGCAGGCTACCAGGGGATGAACGACAGCTACAAAA
AAGACATCACTGCGATTGTGGACGCGGACCAGCCCGAGTGGGACGCCACGATGGCGGGCCAGGAG
GGGTTCCTTCGCAAGGCGAGCGAGTGTATCGACAAGTGTGTTGGCGGGGGTTCCGAGTCGGCGGA
CCTCTGGGAGGGGAACCCCGAGTGGTTGGCCAGTTGCAACGAGTTGAAAACGAAGCTTGAGGAGT
TAGAGAAATAAATGAAGAGATAAGGGACGTGGTTAAGAAATGCTATCAATGTGGGGTTGATGTTC
TTTTATTGTTGAATCGATGCTCATGGAGGCAATCTAGAGACATGGAAGTCGTAAGGTTATGGATG
GTGTCTGCCAAGGGAATGGGACTGATGAAACGGGACTAGGTTCAAACCCCGTTTAAAGTCTGCAA
TTGGGTAACGCACAAGAAAGTGAGGCAGATTCTGAGACCAAGTTG
Right flanking sequence: Indices 91712 -- 92211
AAGTGTCTTCGACGTGAGCGATGCAATTGGGCCTTCATGTCAACTGAACGCATATTCTGGTCACC
ACGATTAATCTTGCTCAATTGAGAACATTCCCGGGTCTAGTGCTCGTCTAAAATTATCCTTCAGT
CCAGACACACTGCATCCACCCAGTCTACTAAGTCCACCTCTTCATTTGCTTGTCTTCTAGCCCTC
TTCACTGCTTGTCCCTCTCTTCATTGCTTCTCTTCTAACCCTCTTCACTGCTTGCATCCTAACCT
GTTGCGACCCGACTTCAGGGTCAGTAGCCAAGGACTGAAGGCGCCGTTGGTGATTTCCTGTCGTT
CTTAGCCAGGGTGGATTTTTTACTCAGATCGAAGGGTACGAATTAGATGGGAATCCCATTAGTTG
GGAGACTCTATTCTGTACAATTTAACAATATCCAGGAATGTAGCTCATGAAACCGGTGAAGGTTT
ACATTCCTGTCACTACCTCGTAGTTGGCTACCGTATTTGGTTAGA
Found at i:91711 original size:40 final size:41
Alignment explanation
Indices: 91638--91717 Score: 108
Period size: 40 Copynumber: 2.0 Consensus size: 41
91628 TTGTGATATG
*
91638 TCCTCGTTATTTGAGATATATCCCCGATGTTTG-AAGTGTA
1 TCCTCGTTATTTGAGATATATCCCCGATATTTGAAAGTGTA
* * * *
91678 TCCTCGTTATTTGAGATGTATGCTCGTTATTTGAAAGTGT
1 TCCTCGTTATTTGAGATATATCCCCGATATTTGAAAGTGT
91718 CTTCGACGTG
Statistics
Matches: 34, Mismatches: 5, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
40 28 0.82
41 6 0.18
ACGTcount: A:0.21, C:0.15, G:0.21, T:0.42
Consensus pattern (41 bp):
TCCTCGTTATTTGAGATATATCCCCGATATTTGAAAGTGTA
Left flanking sequence: Indices 91138 -- 91637
TCACGGACCGGGCGTGGATCGCAGGCTACCAGGGGATGAACGACAGCTACAAAAAAGACATCACT
GCGATTGTGGACGCGGACCAGCCCGAGTGGGACGCCACGATGGCGGGCCAGGAGGGGTTCCTTCG
CAAGGCGAGCGAGTGTATCGACAAGTGTGTTGGCGGGGGTTCCGAGTCGGCGGACCTCTGGGAGG
GGAACCCCGAGTGGTTGGCCAGTTGCAACGAGTTGAAAACGAAGCTTGAGGAGTTAGAGAAATAA
ATGAAGAGATAAGGGACGTGGTTAAGAAATGCTATCAATGTGGGGTTGATGTTCTTTTATTGTTG
AATCGATGCTCATGGAGGCAATCTAGAGACATGGAAGTCGTAAGGTTATGGATGGTGTCTGCCAA
GGGAATGGGACTGATGAAACGGGACTAGGTTCAAACCCCGTTTAAAGTCTGCAATTGGGTAACGC
ACAAGAAAGTGAGGCAGATTCTGAGACCAAGTTGTTTGTGATATG
Right flanking sequence: Indices 91718 -- 92217
CTTCGACGTGAGCGATGCAATTGGGCCTTCATGTCAACTGAACGCATATTCTGGTCACCACGATT
AATCTTGCTCAATTGAGAACATTCCCGGGTCTAGTGCTCGTCTAAAATTATCCTTCAGTCCAGAC
ACACTGCATCCACCCAGTCTACTAAGTCCACCTCTTCATTTGCTTGTCTTCTAGCCCTCTTCACT
GCTTGTCCCTCTCTTCATTGCTTCTCTTCTAACCCTCTTCACTGCTTGCATCCTAACCTGTTGCG
ACCCGACTTCAGGGTCAGTAGCCAAGGACTGAAGGCGCCGTTGGTGATTTCCTGTCGTTCTTAGC
CAGGGTGGATTTTTTACTCAGATCGAAGGGTACGAATTAGATGGGAATCCCATTAGTTGGGAGAC
TCTATTCTGTACAATTTAACAATATCCAGGAATGTAGCTCATGAAACCGGTGAAGGTTTACATTC
CTGTCACTACCTCGTAGTTGGCTACCGTATTTGGTTAGATGCATA
Found at i:91919 original size:24 final size:23
Alignment explanation
Indices: 91878--91960 Score: 75
Period size: 24 Copynumber: 3.7 Consensus size: 23
91868 ACTAAGTCCA
*
91878 CCTCTTCATTTGCTTGTCTTCTAGC
1 CCTCTTCA-CTGCTTGTCTTCTA-C
91903 CCTCTTCACTGCTTGTC--C--C
1 CCTCTTCACTGCTTGTCTTCTAC
* * *
91922 TCTCTTCATTGCTTCTCTTCTAAC
1 CCTCTTCACTGCTTGTCTTCT-AC
91946 CCTCTTCACTGCTTG
1 CCTCTTCACTGCTTG
91961 CATCCTAACC
Statistics
Matches: 46, Mismatches: 7, Indels: 11
0.72 0.11 0.17
Matches are distributed among these distances:
19 15 0.33
21 1 0.02
22 1 0.02
24 21 0.46
25 8 0.17
ACGTcount: A:0.08, C:0.37, G:0.10, T:0.45
Consensus pattern (23 bp):
CCTCTTCACTGCTTGTCTTCTAC
Left flanking sequence: Indices 91378 -- 91877
TTGAGGAGTTAGAGAAATAAATGAAGAGATAAGGGACGTGGTTAAGAAATGCTATCAATGTGGGG
TTGATGTTCTTTTATTGTTGAATCGATGCTCATGGAGGCAATCTAGAGACATGGAAGTCGTAAGG
TTATGGATGGTGTCTGCCAAGGGAATGGGACTGATGAAACGGGACTAGGTTCAAACCCCGTTTAA
AGTCTGCAATTGGGTAACGCACAAGAAAGTGAGGCAGATTCTGAGACCAAGTTGTTTGTGATATG
TCCTCGTTATTTGAGATATATCCCCGATGTTTGAAGTGTATCCTCGTTATTTGAGATGTATGCTC
GTTATTTGAAAGTGTCTTCGACGTGAGCGATGCAATTGGGCCTTCATGTCAACTGAACGCATATT
CTGGTCACCACGATTAATCTTGCTCAATTGAGAACATTCCCGGGTCTAGTGCTCGTCTAAAATTA
TCCTTCAGTCCAGACACACTGCATCCACCCAGTCTACTAAGTCCA
Right flanking sequence: Indices 91961 -- 92460
CATCCTAACCTGTTGCGACCCGACTTCAGGGTCAGTAGCCAAGGACTGAAGGCGCCGTTGGTGAT
TTCCTGTCGTTCTTAGCCAGGGTGGATTTTTTACTCAGATCGAAGGGTACGAATTAGATGGGAAT
CCCATTAGTTGGGAGACTCTATTCTGTACAATTTAACAATATCCAGGAATGTAGCTCATGAAACC
GGTGAAGGTTTACATTCCTGTCACTACCTCGTAGTTGGCTACCGTATTTGGTTAGATGCATAACC
GGGTATAGGGAGCCAACATAACCCTCACCACTCTTGTCCTCTAGCCCTCTTCACTTGTCCACTAA
CCTCTTGACTTGTCCACTAACCCTCTTCACTTGTCCTCTAACTCTCTTCACTGCTTGTATTCTAA
TCCTATTTAGAGGTCTTGATTATTTCGACAAAATCTTCGCGGTCTCGCCCGTCTTCTCGTACCGG
TCGCGGGCCTCCAAGTCCCCCCGGGCCAACATCGCCTCCAACGCC
Found at i:92279 original size:21 final size:21
Alignment explanation
Indices: 92253--92337 Score: 118
Period size: 21 Copynumber: 4.1 Consensus size: 21
92243 CCTCACCACT
* *
92253 CTTGTCCTCTAGCCCTCTTCA
1 CTTGTCCACTAACCCTCTTCA
*
92274 CTTGTCCACTAA-CCTCTTGA
1 CTTGTCCACTAACCCTCTTCA
92294 CTTGTCCACTAACCCTCTTCA
1 CTTGTCCACTAACCCTCTTCA
* *
92315 CTTGTCCTCTAACTCTCTTCA
1 CTTGTCCACTAACCCTCTTCA
92336 CT
1 CT
92338 GCTTGTATTC
Statistics
Matches: 57, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
20 19 0.33
21 38 0.67
ACGTcount: A:0.15, C:0.40, G:0.07, T:0.38
Consensus pattern (21 bp):
CTTGTCCACTAACCCTCTTCA
Left flanking sequence: Indices 91753 -- 92252
AACTGAACGCATATTCTGGTCACCACGATTAATCTTGCTCAATTGAGAACATTCCCGGGTCTAGT
GCTCGTCTAAAATTATCCTTCAGTCCAGACACACTGCATCCACCCAGTCTACTAAGTCCACCTCT
TCATTTGCTTGTCTTCTAGCCCTCTTCACTGCTTGTCCCTCTCTTCATTGCTTCTCTTCTAACCC
TCTTCACTGCTTGCATCCTAACCTGTTGCGACCCGACTTCAGGGTCAGTAGCCAAGGACTGAAGG
CGCCGTTGGTGATTTCCTGTCGTTCTTAGCCAGGGTGGATTTTTTACTCAGATCGAAGGGTACGA
ATTAGATGGGAATCCCATTAGTTGGGAGACTCTATTCTGTACAATTTAACAATATCCAGGAATGT
AGCTCATGAAACCGGTGAAGGTTTACATTCCTGTCACTACCTCGTAGTTGGCTACCGTATTTGGT
TAGATGCATAACCGGGTATAGGGAGCCAACATAACCCTCACCACT
Right flanking sequence: Indices 92338 -- 92837
GCTTGTATTCTAATCCTATTTAGAGGTCTTGATTATTTCGACAAAATCTTCGCGGTCTCGCCCGT
CTTCTCGTACCGGTCGCGGGCCTCCAAGTCCCCCCGGGCCAACATCGCCTCCAACGCCGCCAGGT
ACGGCGCCTTGGTCACGCTCTCGGGGTTCTGCGCCTTCACAGTGCTAAAGTAGTTGGTGTAGATC
TCACCGTTGTAGTTCCCAATGGGCGCGTTGAGCACAATGTCCAGCTGCTGGAACGAGTCGGTGTA
GTTGATCACATGCGGCCGGATCTCCTTCAGGAGCCGCGGCAACACCTTCAGGTTGATCTCGGCAA
ACACCTTGGGCGACACCAACGAGTGGCTCAAGAACAACGACAGGCACTGCTGCAACACAAACCCC
ACCGCAAAGTACTGGCCCTGCAACCGCAAGTAGGGCACCACCAGCTGGTCCGGGTGGGCGTCCAC
CCGGTGCACAAACTCGGTGAGCAAGTACTGCGCCGACCACAACTT
Found at i:92299 original size:41 final size:42
Alignment explanation
Indices: 92253--92333 Score: 128
Period size: 41 Copynumber: 2.0 Consensus size: 42
92243 CCTCACCACT
* *
92253 CTTGTCCTCTAGCCCTCTTCACTTGTCCACTAAC-CTCTTGA
1 CTTGTCCACTAACCCTCTTCACTTGTCCACTAACTCTCTTGA
*
92294 CTTGTCCACTAACCCTCTTCACTTGTCCTCTAACTCTCTT
1 CTTGTCCACTAACCCTCTTCACTTGTCCACTAACTCTCTT
92334 CACTGCTTGT
Statistics
Matches: 36, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
41 31 0.86
42 5 0.14
ACGTcount: A:0.15, C:0.40, G:0.07, T:0.38
Consensus pattern (42 bp):
CTTGTCCACTAACCCTCTTCACTTGTCCACTAACTCTCTTGA
Left flanking sequence: Indices 91753 -- 92252
AACTGAACGCATATTCTGGTCACCACGATTAATCTTGCTCAATTGAGAACATTCCCGGGTCTAGT
GCTCGTCTAAAATTATCCTTCAGTCCAGACACACTGCATCCACCCAGTCTACTAAGTCCACCTCT
TCATTTGCTTGTCTTCTAGCCCTCTTCACTGCTTGTCCCTCTCTTCATTGCTTCTCTTCTAACCC
TCTTCACTGCTTGCATCCTAACCTGTTGCGACCCGACTTCAGGGTCAGTAGCCAAGGACTGAAGG
CGCCGTTGGTGATTTCCTGTCGTTCTTAGCCAGGGTGGATTTTTTACTCAGATCGAAGGGTACGA
ATTAGATGGGAATCCCATTAGTTGGGAGACTCTATTCTGTACAATTTAACAATATCCAGGAATGT
AGCTCATGAAACCGGTGAAGGTTTACATTCCTGTCACTACCTCGTAGTTGGCTACCGTATTTGGT
TAGATGCATAACCGGGTATAGGGAGCCAACATAACCCTCACCACT
Right flanking sequence: Indices 92334 -- 92833
CACTGCTTGTATTCTAATCCTATTTAGAGGTCTTGATTATTTCGACAAAATCTTCGCGGTCTCGC
CCGTCTTCTCGTACCGGTCGCGGGCCTCCAAGTCCCCCCGGGCCAACATCGCCTCCAACGCCGCC
AGGTACGGCGCCTTGGTCACGCTCTCGGGGTTCTGCGCCTTCACAGTGCTAAAGTAGTTGGTGTA
GATCTCACCGTTGTAGTTCCCAATGGGCGCGTTGAGCACAATGTCCAGCTGCTGGAACGAGTCGG
TGTAGTTGATCACATGCGGCCGGATCTCCTTCAGGAGCCGCGGCAACACCTTCAGGTTGATCTCG
GCAAACACCTTGGGCGACACCAACGAGTGGCTCAAGAACAACGACAGGCACTGCTGCAACACAAA
CCCCACCGCAAAGTACTGGCCCTGCAACCGCAAGTAGGGCACCACCAGCTGGTCCGGGTGGGCGT
CCACCCGGTGCACAAACTCGGTGAGCAAGTACTGCGCCGACCACA
Found at i:94607 original size:11 final size:10
Alignment explanation
Indices: 94591--94633 Score: 50
Period size: 11 Copynumber: 4.0 Consensus size: 10
94581 AAAGCCGTGA
94591 GGAAGAAGGTG
1 GGAAG-AGGTG
94602 GGAAGAAGGTG
1 GGAAG-AGGTG
*
94613 GGATGAGAGTG
1 GGAAGAG-GTG
94624 GGAAGAGGTG
1 GGAAGAGGTG
94634 CTGAGAAGAG
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
10 5 0.17
11 24 0.83
ACGTcount: A:0.33, C:0.00, G:0.56, T:0.12
Consensus pattern (10 bp):
GGAAGAGGTG
Left flanking sequence: Indices 94091 -- 94590
CGTTGCCCTTGAGCGCGGGGATCCAGAGCACCAAGTGGACCGCCGACCGGATCACCGCCAGCGGG
TCCATCAACGAGATGATCTGGCACCGGGCCTCGGTTTTCTCCTGGGAGTCGATCTCGAGGTAGCG
GGCCAAGCGGCCGACCCGGGCACCGGCCAACTCACGCTGCTCGGCCTTGGTGTAGTCGTAGGTCT
TGGCCAGCGCGGCCATGATGGGGTCCCGCTCCAACTGCTCCGTCACCTCTGCCATCAACTCCGAG
CGCTCCTGGGACCCTTCTAAGAAGTAGTTCATCTTGACCGGGTCCCACGCCTGGTTGGCACGCTC
GCGGGCAATGAGCTCCTGGGGCTTCTGGGCCGGGGTGTAGTCTACCTTGCTAGTGATTCTCACCA
TGTTGGTGAGCTACGGGTGAATCGACGGTATTTAAGCTGTTTGCCATGTGACGGATCGGGAACAG
TGGGGTACATTGTGACACAAACGGGGCTCGTAGCAAAAGCCGTGA
Right flanking sequence: Indices 94634 -- 95133
CTGAGAAGAGGGCTGGGGGAGAATTGGCGTGTCTAGGAAGGTCTGGGAAAGTTGTTGAAAAGTTA
CTGATTACCTTAGTACTTTTTTTGGTTCTTTCTGCTGTTTGGGCATTGATTGCGTACTTTGCACA
TGCATTTCGGAGTACGAGACGGTTGCAAGTGGAGAAAATCAGGGGTGAACGTGGAGGGTACGAAG
GGATGAAACGGTAATGGGATTGAGTGTCTGGATGTCTGGATGTCTGGTTGTCTGGCACGCGGTGA
ATTATACTGCGACTAAAGAGCCGTTGGTTTCTTTCCCATTGATCTGTAGACGACGGAGATTGTAG
ATTGTATGCCGAGCGACGTACCGAAGACGTACCGGACGTACCCCAGAATGGCTTGGTAAAAGGTG
GAGAAACCTGGGGAATCCGAACAATCGCAGACTAGTCCACTTTAGAGTGCCTAGTCTCACTAGTG
TCGTGAACTAGGCCACCAACTACGTGTACGAGCCTACGCTGGTCA
Found at i:94643 original size:22 final size:22
Alignment explanation
Indices: 94594--94643 Score: 52
Period size: 22 Copynumber: 2.3 Consensus size: 22
94584 GCCGTGAGGA
94594 AGAAG-GTGGGAAGAAGGTGGG
1 AGAAGAGTGGGAAGAAGGTGGG
*
94615 ATG-AGAGTGGGAAG-AGGTGCTG
1 A-GAAGAGTGGGAAGAAGGTG-GG
94637 AGAAGAG
1 AGAAGAG
94644 GGCTGGGGGA
Statistics
Matches: 24, Mismatches: 1, Indels: 7
0.75 0.03 0.22
Matches are distributed among these distances:
21 9 0.38
22 15 0.62
ACGTcount: A:0.34, C:0.02, G:0.52, T:0.12
Consensus pattern (22 bp):
AGAAGAGTGGGAAGAAGGTGGG
Left flanking sequence: Indices 94094 -- 94593
TGCCCTTGAGCGCGGGGATCCAGAGCACCAAGTGGACCGCCGACCGGATCACCGCCAGCGGGTCC
ATCAACGAGATGATCTGGCACCGGGCCTCGGTTTTCTCCTGGGAGTCGATCTCGAGGTAGCGGGC
CAAGCGGCCGACCCGGGCACCGGCCAACTCACGCTGCTCGGCCTTGGTGTAGTCGTAGGTCTTGG
CCAGCGCGGCCATGATGGGGTCCCGCTCCAACTGCTCCGTCACCTCTGCCATCAACTCCGAGCGC
TCCTGGGACCCTTCTAAGAAGTAGTTCATCTTGACCGGGTCCCACGCCTGGTTGGCACGCTCGCG
GGCAATGAGCTCCTGGGGCTTCTGGGCCGGGGTGTAGTCTACCTTGCTAGTGATTCTCACCATGT
TGGTGAGCTACGGGTGAATCGACGGTATTTAAGCTGTTTGCCATGTGACGGATCGGGAACAGTGG
GGTACATTGTGACACAAACGGGGCTCGTAGCAAAAGCCGTGAGGA
Right flanking sequence: Indices 94644 -- 95143
GGCTGGGGGAGAATTGGCGTGTCTAGGAAGGTCTGGGAAAGTTGTTGAAAAGTTACTGATTACCT
TAGTACTTTTTTTGGTTCTTTCTGCTGTTTGGGCATTGATTGCGTACTTTGCACATGCATTTCGG
AGTACGAGACGGTTGCAAGTGGAGAAAATCAGGGGTGAACGTGGAGGGTACGAAGGGATGAAACG
GTAATGGGATTGAGTGTCTGGATGTCTGGATGTCTGGTTGTCTGGCACGCGGTGAATTATACTGC
GACTAAAGAGCCGTTGGTTTCTTTCCCATTGATCTGTAGACGACGGAGATTGTAGATTGTATGCC
GAGCGACGTACCGAAGACGTACCGGACGTACCCCAGAATGGCTTGGTAAAAGGTGGAGAAACCTG
GGGAATCCGAACAATCGCAGACTAGTCCACTTTAGAGTGCCTAGTCTCACTAGTGTCGTGAACTA
GGCCACCAACTACGTGTACGAGCCTACGCTGGTCACTGGAGGGCT
Found at i:94866 original size:8 final size:8
Alignment explanation
Indices: 94853--94883 Score: 53
Period size: 8 Copynumber: 3.9 Consensus size: 8
94843 TGGGATTGAG
94853 TGTCTGGA
1 TGTCTGGA
94861 TGTCTGGA
1 TGTCTGGA
*
94869 TGTCTGGT
1 TGTCTGGA
94877 TGTCTGG
1 TGTCTGG
94884 CACGCGGTGA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
8 22 1.00
ACGTcount: A:0.06, C:0.13, G:0.39, T:0.42
Consensus pattern (8 bp):
TGTCTGGA
Left flanking sequence: Indices 94353 -- 94852
CTCCTGGGACCCTTCTAAGAAGTAGTTCATCTTGACCGGGTCCCACGCCTGGTTGGCACGCTCGC
GGGCAATGAGCTCCTGGGGCTTCTGGGCCGGGGTGTAGTCTACCTTGCTAGTGATTCTCACCATG
TTGGTGAGCTACGGGTGAATCGACGGTATTTAAGCTGTTTGCCATGTGACGGATCGGGAACAGTG
GGGTACATTGTGACACAAACGGGGCTCGTAGCAAAAGCCGTGAGGAAGAAGGTGGGAAGAAGGTG
GGATGAGAGTGGGAAGAGGTGCTGAGAAGAGGGCTGGGGGAGAATTGGCGTGTCTAGGAAGGTCT
GGGAAAGTTGTTGAAAAGTTACTGATTACCTTAGTACTTTTTTTGGTTCTTTCTGCTGTTTGGGC
ATTGATTGCGTACTTTGCACATGCATTTCGGAGTACGAGACGGTTGCAAGTGGAGAAAATCAGGG
GTGAACGTGGAGGGTACGAAGGGATGAAACGGTAATGGGATTGAG
Right flanking sequence: Indices 94884 -- 95383
CACGCGGTGAATTATACTGCGACTAAAGAGCCGTTGGTTTCTTTCCCATTGATCTGTAGACGACG
GAGATTGTAGATTGTATGCCGAGCGACGTACCGAAGACGTACCGGACGTACCCCAGAATGGCTTG
GTAAAAGGTGGAGAAACCTGGGGAATCCGAACAATCGCAGACTAGTCCACTTTAGAGTGCCTAGT
CTCACTAGTGTCGTGAACTAGGCCACCAACTACGTGTACGAGCCTACGCTGGTCACTGGAGGGCT
ACACCCACGGCGGAATTAAGAAAAAAGACCGGTGGCTATTGTCGGCTCGGTCCAGGGTTGTGCCG
AACGATTGTCGCGTGGCGGCGAATGTCCTTATTGTGATTCCCAAAGTGGTAATCTCCGATGTGGG
GAACGCGTGGAGTGTTAGATAAACTTAGGCCTGTTGGGAGTACGCACTAGTGTGAGGGTTTGCAT
TCGAACGATAACCAAGTTGAGACCAAGGAAAAGTGTCCACACTTA
Found at i:97208 original size:11 final size:11
Alignment explanation
Indices: 97192--97217 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
97182 GGGTGGTGGT
97192 GGTGGCGGTTG
1 GGTGGCGGTTG
97203 GGTGGCGGTTG
1 GGTGGCGGTTG
97214 GGTG
1 GGTG
97218 TGGTAGTGCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.00, C:0.08, G:0.65, T:0.27
Consensus pattern (11 bp):
GGTGGCGGTTG
Left flanking sequence: Indices 96692 -- 97191
CACGCCGGGTTGAGGGGGAACGGCTGGGTGTGGTTGGCGATGTGGCGAGGCTGGTAGGTCAGGTC
GACCACGGTCTGGCCGTCGACCACGATGTAGTTCAGCTTGTGCTCCTGTGGCGGGTAGTAGTACC
GGTTGCGGTAGTATTCGCCACGGATGTTCTTGGGACCCAACCATCCCTTGAGGGCGCGGGCAAAC
GTCAGCAGATGGTCCTTTTTCGGGTGGGTTTTCTCGACGGTGTGTTGGGCAGGGTACCGCGGGTA
TGCTAGCGTGCGTCTAAACCGGACCAGCTGGCGCTGGAGGCCCTGGGCGTGGTTGCGGAGCATGG
TGTGGTGGTGTAAATTTTTCACTTTGAGAAGTCGCACGTGAGGGTGGTGGGGGAACGGTAAGAAC
GGGAAGCGGGAGGAGATGGGTGTTGAGGGGTGTAAAGGGGCTTAGGGGCGTTGACGGGGGTTAGA
TTGGGTGGTTGGTTGTGGGCTTGGTTGGTTTCTGGGGGTGGTGGT
Right flanking sequence: Indices 97218 -- 97717
TGGTAGTGCATATGGTGGTCGAGTAGGTAGGGATAAATAAAGGGTTACGGTATTGGAGGGTGTGG
TATTGAAGGTTTGGTATTGGGGGTTTGGTATTGGAGGGTGTGGTATTGGAGGGTGGAACAGGATC
CCGTTTGCATCCTATTTGCGACGTCCCGTTCTGTTTTTGTCCATCCTTGTTCTATTTTGTAATTT
TTGTCACTGGATCTATTGTCATTTGTCACATCAACGCTTTATAATATCGCTTCACCGATAACCAG
TATTGGCAAAACGCCAACATTATCACACGATCCCAAGCACTGTTGCACACGCAACCAAGAAATCC
ACACAAATCCACCCAAATCCTCGCCGTTTCCGCTCGATCTACATTCCCTCTGCACCCATCCACCT
TGGTACGGATTTCCTGCATGCGACAGGTAAACTTTTGCAGCCAACCCCTTTTGCAGCCACCCCTT
TTGCAACCAACCCCCACCGTTCCGATTACCCCACACTATCGCCCG
Found at i:97286 original size:15 final size:15
Alignment explanation
Indices: 97266--97337 Score: 103
Period size: 15 Copynumber: 4.9 Consensus size: 15
97256 AAAGGGTTAC
97266 GGTATTGGAGGGTGT
1 GGTATTGGAGGGTGT
* *
97281 GGTATT-GAAGGTTT
1 GGTATTGGAGGGTGT
*
97295 GGTATTGG-GGGTTT
1 GGTATTGGAGGGTGT
97309 GGTATTGGAGGGTGT
1 GGTATTGGAGGGTGT
97324 GGTATTGGAGGGTG
1 GGTATTGGAGGGTG
97338 GAACAGGATC
Statistics
Matches: 51, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
14 25 0.49
15 26 0.51
ACGTcount: A:0.14, C:0.00, G:0.50, T:0.36
Consensus pattern (15 bp):
GGTATTGGAGGGTGT
Left flanking sequence: Indices 96766 -- 97265
CTGGCCGTCGACCACGATGTAGTTCAGCTTGTGCTCCTGTGGCGGGTAGTAGTACCGGTTGCGGT
AGTATTCGCCACGGATGTTCTTGGGACCCAACCATCCCTTGAGGGCGCGGGCAAACGTCAGCAGA
TGGTCCTTTTTCGGGTGGGTTTTCTCGACGGTGTGTTGGGCAGGGTACCGCGGGTATGCTAGCGT
GCGTCTAAACCGGACCAGCTGGCGCTGGAGGCCCTGGGCGTGGTTGCGGAGCATGGTGTGGTGGT
GTAAATTTTTCACTTTGAGAAGTCGCACGTGAGGGTGGTGGGGGAACGGTAAGAACGGGAAGCGG
GAGGAGATGGGTGTTGAGGGGTGTAAAGGGGCTTAGGGGCGTTGACGGGGGTTAGATTGGGTGGT
TGGTTGTGGGCTTGGTTGGTTTCTGGGGGTGGTGGTGGTGGCGGTTGGGTGGCGGTTGGGTGTGG
TAGTGCATATGGTGGTCGAGTAGGTAGGGATAAATAAAGGGTTAC
Right flanking sequence: Indices 97338 -- 97837
GAACAGGATCCCGTTTGCATCCTATTTGCGACGTCCCGTTCTGTTTTTGTCCATCCTTGTTCTAT
TTTGTAATTTTTGTCACTGGATCTATTGTCATTTGTCACATCAACGCTTTATAATATCGCTTCAC
CGATAACCAGTATTGGCAAAACGCCAACATTATCACACGATCCCAAGCACTGTTGCACACGCAAC
CAAGAAATCCACACAAATCCACCCAAATCCTCGCCGTTTCCGCTCGATCTACATTCCCTCTGCAC
CCATCCACCTTGGTACGGATTTCCTGCATGCGACAGGTAAACTTTTGCAGCCAACCCCTTTTGCA
GCCACCCCTTTTGCAACCAACCCCCACCGTTCCGATTACCCCACACTATCGCCCGTACGGGTCAC
TTCTCGTACCCGCGCTTCACGTGCTCTCCGGGTTCTGTCCCGCGCCAAGGCGACAGACACTTCAC
CAGGGCACCAGGATCCCGCGACCGACAACCCGACGATGTCTGTCC
Found at i:97671 original size:15 final size:16
Alignment explanation
Indices: 97639--97686 Score: 80
Period size: 16 Copynumber: 3.1 Consensus size: 16
97629 GACAGGTAAA
97639 CTTTTGCAGCCAACCC
1 CTTTTGCAGCCAACCC
97655 CTTTTGCAGCC-ACCC
1 CTTTTGCAGCCAACCC
*
97670 CTTTTGCAACCAACCC
1 CTTTTGCAGCCAACCC
97686 C
1 C
97687 CACCGTTCCG
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
15 14 0.47
16 16 0.53
ACGTcount: A:0.19, C:0.46, G:0.10, T:0.25
Consensus pattern (16 bp):
CTTTTGCAGCCAACCC
Left flanking sequence: Indices 97139 -- 97638
GGGTTAGATTGGGTGGTTGGTTGTGGGCTTGGTTGGTTTCTGGGGGTGGTGGTGGTGGCGGTTGG
GTGGCGGTTGGGTGTGGTAGTGCATATGGTGGTCGAGTAGGTAGGGATAAATAAAGGGTTACGGT
ATTGGAGGGTGTGGTATTGAAGGTTTGGTATTGGGGGTTTGGTATTGGAGGGTGTGGTATTGGAG
GGTGGAACAGGATCCCGTTTGCATCCTATTTGCGACGTCCCGTTCTGTTTTTGTCCATCCTTGTT
CTATTTTGTAATTTTTGTCACTGGATCTATTGTCATTTGTCACATCAACGCTTTATAATATCGCT
TCACCGATAACCAGTATTGGCAAAACGCCAACATTATCACACGATCCCAAGCACTGTTGCACACG
CAACCAAGAAATCCACACAAATCCACCCAAATCCTCGCCGTTTCCGCTCGATCTACATTCCCTCT
GCACCCATCCACCTTGGTACGGATTTCCTGCATGCGACAGGTAAA
Right flanking sequence: Indices 97687 -- 98186
CACCGTTCCGATTACCCCACACTATCGCCCGTACGGGTCACTTCTCGTACCCGCGCTTCACGTGC
TCTCCGGGTTCTGTCCCGCGCCAAGGCGACAGACACTTCACCAGGGCACCAGGATCCCGCGACCG
ACAACCCGACGATGTCTGTCCCGATAAGAGCGGTGTGACAGGGCCTGGTGAGCCCATTGGCGGGA
GTGGTACTACATTCTTTGTGACGACAAGATCGACGTGGAAAGGTCGCGTTATTTTCGAGGCACCA
TGGTAGTCACAAAGTGATGTAACACCCCCGGCATGGTCGCGACCACCGACGACTGTCCCGGTGCG
TGCGGTGTCGGGAGCCCGCCTGGATCGACTTACTGAGTTGGTCGAGAACTTGCTCAGAAGGTGTT
ATTTTGTGGAGTGGTGGGTGGACACCGGGTGGTTATTTCTGTCACCAAGAAACCAAGACCAAGAA
CCAAGAAAAGAATACCAAGAATAATCTCCGATAATACTCCGGGGT
Found at i:98145 original size:13 final size:14
Alignment explanation
Indices: 98120--98161 Score: 52
Period size: 14 Copynumber: 3.1 Consensus size: 14
98110 TATTTCTGTC
98120 ACCAAGAAACCAAG
1 ACCAAGAAACCAAG
98134 ACCAAG-AACCAAG
1 ACCAAGAAACCAAG
*
98147 A-AAAGAATACCAAG
1 ACCAAGAA-ACCAAG
98161 A
1 A
98162 ATAATCTCCG
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
12 3 0.12
13 9 0.36
14 13 0.52
ACGTcount: A:0.60, C:0.24, G:0.14, T:0.02
Consensus pattern (14 bp):
ACCAAGAAACCAAG
Left flanking sequence: Indices 97620 -- 98119
CCTGCATGCGACAGGTAAACTTTTGCAGCCAACCCCTTTTGCAGCCACCCCTTTTGCAACCAACC
CCCACCGTTCCGATTACCCCACACTATCGCCCGTACGGGTCACTTCTCGTACCCGCGCTTCACGT
GCTCTCCGGGTTCTGTCCCGCGCCAAGGCGACAGACACTTCACCAGGGCACCAGGATCCCGCGAC
CGACAACCCGACGATGTCTGTCCCGATAAGAGCGGTGTGACAGGGCCTGGTGAGCCCATTGGCGG
GAGTGGTACTACATTCTTTGTGACGACAAGATCGACGTGGAAAGGTCGCGTTATTTTCGAGGCAC
CATGGTAGTCACAAAGTGATGTAACACCCCCGGCATGGTCGCGACCACCGACGACTGTCCCGGTG
CGTGCGGTGTCGGGAGCCCGCCTGGATCGACTTACTGAGTTGGTCGAGAACTTGCTCAGAAGGTG
TTATTTTGTGGAGTGGTGGGTGGACACCGGGTGGTTATTTCTGTC
Right flanking sequence: Indices 98162 -- 98661
ATAATCTCCGATAATACTCCGGGGTCGAGCATTCCCATCCAATGCCGACCCTGTCGCGGTGTCGT
CCATGTCGCCATACACACTCTCAATACTCACCCCACACTCACTCCTCAACCACCCCACCCCGTGT
TGATTTCTAAATCCTATCCTATCTATGTTCTTTCTATCTCGCATTCATCGCACTACGTCATACGC
GTAAACATGATCCATACCGGACTGATCCAGGATCTACAAACCGAGAACTACATACAGAACCGCAC
AAAAGAACCACCCATTATCGAACCGCAACTAAGAACCATACAAACCAATAAACCAATGAACCAAA
AAACCAATACTCTATCGCACTACACCTCTCACCACCACTTCTCACCACCACTCTCACCATAATAA
CCACCCACAATGACTTCCACCACCACTCCCCACCACCCGTTTCTCTTCCTCGCGTAGTAACTTAC
CGTCCCGGCCCGCCGTGTCACCCGTCGGCGCGTCACCAGGCACTG
Found at i:98158 original size:21 final size:21
Alignment explanation
Indices: 98120--98162 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
98110 TATTTCTGTC
*
98120 ACCAAGAAACCAAGACCAAGA
1 ACCAAGAAAACAAGACCAAGA
* *
98141 ACCAAGAAAAGAATACCAAGA
1 ACCAAGAAAACAAGACCAAGA
98162 A
1 A
98163 TAATCTCCGA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.60, C:0.23, G:0.14, T:0.02
Consensus pattern (21 bp):
ACCAAGAAAACAAGACCAAGA
Left flanking sequence: Indices 97620 -- 98119
CCTGCATGCGACAGGTAAACTTTTGCAGCCAACCCCTTTTGCAGCCACCCCTTTTGCAACCAACC
CCCACCGTTCCGATTACCCCACACTATCGCCCGTACGGGTCACTTCTCGTACCCGCGCTTCACGT
GCTCTCCGGGTTCTGTCCCGCGCCAAGGCGACAGACACTTCACCAGGGCACCAGGATCCCGCGAC
CGACAACCCGACGATGTCTGTCCCGATAAGAGCGGTGTGACAGGGCCTGGTGAGCCCATTGGCGG
GAGTGGTACTACATTCTTTGTGACGACAAGATCGACGTGGAAAGGTCGCGTTATTTTCGAGGCAC
CATGGTAGTCACAAAGTGATGTAACACCCCCGGCATGGTCGCGACCACCGACGACTGTCCCGGTG
CGTGCGGTGTCGGGAGCCCGCCTGGATCGACTTACTGAGTTGGTCGAGAACTTGCTCAGAAGGTG
TTATTTTGTGGAGTGGTGGGTGGACACCGGGTGGTTATTTCTGTC
Right flanking sequence: Indices 98163 -- 98662
TAATCTCCGATAATACTCCGGGGTCGAGCATTCCCATCCAATGCCGACCCTGTCGCGGTGTCGTC
CATGTCGCCATACACACTCTCAATACTCACCCCACACTCACTCCTCAACCACCCCACCCCGTGTT
GATTTCTAAATCCTATCCTATCTATGTTCTTTCTATCTCGCATTCATCGCACTACGTCATACGCG
TAAACATGATCCATACCGGACTGATCCAGGATCTACAAACCGAGAACTACATACAGAACCGCACA
AAAGAACCACCCATTATCGAACCGCAACTAAGAACCATACAAACCAATAAACCAATGAACCAAAA
AACCAATACTCTATCGCACTACACCTCTCACCACCACTTCTCACCACCACTCTCACCATAATAAC
CACCCACAATGACTTCCACCACCACTCCCCACCACCCGTTTCTCTTCCTCGCGTAGTAACTTACC
GTCCCGGCCCGCCGTGTCACCCGTCGGCGCGTCACCAGGCACTGT
Found at i:98485 original size:16 final size:16
Alignment explanation
Indices: 98464--98494 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
98454 GAACCATACA
*
98464 AACCAATAAACCAATG
1 AACCAAAAAACCAATG
98480 AACCAAAAAACCAAT
1 AACCAAAAAACCAAT
98495 ACTCTATCGC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.61, C:0.26, G:0.03, T:0.10
Consensus pattern (16 bp):
AACCAAAAAACCAATG
Left flanking sequence: Indices 97964 -- 98463
TGTAACACCCCCGGCATGGTCGCGACCACCGACGACTGTCCCGGTGCGTGCGGTGTCGGGAGCCC
GCCTGGATCGACTTACTGAGTTGGTCGAGAACTTGCTCAGAAGGTGTTATTTTGTGGAGTGGTGG
GTGGACACCGGGTGGTTATTTCTGTCACCAAGAAACCAAGACCAAGAACCAAGAAAAGAATACCA
AGAATAATCTCCGATAATACTCCGGGGTCGAGCATTCCCATCCAATGCCGACCCTGTCGCGGTGT
CGTCCATGTCGCCATACACACTCTCAATACTCACCCCACACTCACTCCTCAACCACCCCACCCCG
TGTTGATTTCTAAATCCTATCCTATCTATGTTCTTTCTATCTCGCATTCATCGCACTACGTCATA
CGCGTAAACATGATCCATACCGGACTGATCCAGGATCTACAAACCGAGAACTACATACAGAACCG
CACAAAAGAACCACCCATTATCGAACCGCAACTAAGAACCATACA
Right flanking sequence: Indices 98495 -- 98994
ACTCTATCGCACTACACCTCTCACCACCACTTCTCACCACCACTCTCACCATAATAACCACCCAC
AATGACTTCCACCACCACTCCCCACCACCCGTTTCTCTTCCTCGCGTAGTAACTTACCGTCCCGG
CCCGCCGTGTCACCCGTCGGCGCGTCACCAGGCACTGTTGCGCCCCTCGCCACGGTCTTGTCCAC
CGATATGACAACCACCACCCACCACCACAACCACCATGTCCCTCGCCTACACCTACGCCGTGCTC
TCCCGCGTGCTTCTCTTCCTCCGTTTTCTCGCCCTGCTCCCGTCGCGCCTCTGGCCACCGCGTTG
TTTTGCACCATCGCGCGCAACCACCCGTTTTACGCGCTCGGAGCCAAAGGGAAACACCACCACTC
TCGCGCTGCACCTGAGCTACCACGCCACCAAGGAGAGCTGCGACGTGATGGACCCGCCGCTGGAG
CTGCCGAAGGACTTGCGCAACCTGCGCTTTCCGCTGTTGTTCCCC
Found at i:98531 original size:13 final size:12
Alignment explanation
Indices: 98512--98545 Score: 59
Period size: 13 Copynumber: 2.8 Consensus size: 12
98502 CGCACTACAC
98512 CTCTCACCACCA
1 CTCTCACCACCA
98524 CTTCTCACCACCA
1 C-TCTCACCACCA
98537 CTCTCACCA
1 CTCTCACCA
98546 TAATAACCAC
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
12 9 0.43
13 12 0.57
ACGTcount: A:0.24, C:0.56, G:0.00, T:0.21
Consensus pattern (12 bp):
CTCTCACCACCA
Left flanking sequence: Indices 98012 -- 98511
TGCGGTGTCGGGAGCCCGCCTGGATCGACTTACTGAGTTGGTCGAGAACTTGCTCAGAAGGTGTT
ATTTTGTGGAGTGGTGGGTGGACACCGGGTGGTTATTTCTGTCACCAAGAAACCAAGACCAAGAA
CCAAGAAAAGAATACCAAGAATAATCTCCGATAATACTCCGGGGTCGAGCATTCCCATCCAATGC
CGACCCTGTCGCGGTGTCGTCCATGTCGCCATACACACTCTCAATACTCACCCCACACTCACTCC
TCAACCACCCCACCCCGTGTTGATTTCTAAATCCTATCCTATCTATGTTCTTTCTATCTCGCATT
CATCGCACTACGTCATACGCGTAAACATGATCCATACCGGACTGATCCAGGATCTACAAACCGAG
AACTACATACAGAACCGCACAAAAGAACCACCCATTATCGAACCGCAACTAAGAACCATACAAAC
CAATAAACCAATGAACCAAAAAACCAATACTCTATCGCACTACAC
Right flanking sequence: Indices 98546 -- 99045
TAATAACCACCCACAATGACTTCCACCACCACTCCCCACCACCCGTTTCTCTTCCTCGCGTAGTA
ACTTACCGTCCCGGCCCGCCGTGTCACCCGTCGGCGCGTCACCAGGCACTGTTGCGCCCCTCGCC
ACGGTCTTGTCCACCGATATGACAACCACCACCCACCACCACAACCACCATGTCCCTCGCCTACA
CCTACGCCGTGCTCTCCCGCGTGCTTCTCTTCCTCCGTTTTCTCGCCCTGCTCCCGTCGCGCCTC
TGGCCACCGCGTTGTTTTGCACCATCGCGCGCAACCACCCGTTTTACGCGCTCGGAGCCAAAGGG
AAACACCACCACTCTCGCGCTGCACCTGAGCTACCACGCCACCAAGGAGAGCTGCGACGTGATGG
ACCCGCCGCTGGAGCTGCCGAAGGACTTGCGCAACCTGCGCTTTCCGCTGTTGTTCCCCCCACGG
TACAAAAAACGCCCGCTCGACGACGACAACCCGTTCCACGACACG
Found at i:99536 original size:21 final size:18
Alignment explanation
Indices: 99495--99541 Score: 58
Period size: 18 Copynumber: 2.4 Consensus size: 18
99485 ATACTGATAA
*
99495 GGAAAACCGGTCGCCGGC
1 GGAAAACCGGTCCCCGGC
99513 GGAAAACCGGTCACCCAAGGC
1 GGAAAACCGGTC-CCC--GGC
99534 GGAAAACC
1 GGAAAACC
99542 AGTTGCCCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
18 12 0.48
19 2 0.08
21 11 0.44
ACGTcount: A:0.32, C:0.32, G:0.32, T:0.04
Consensus pattern (18 bp):
GGAAAACCGGTCCCCGGC
Left flanking sequence: Indices 98995 -- 99494
CCACGGTACAAAAAACGCCCGCTCGACGACGACAACCCGTTCCACGACACGGGCAAGCGGGTCAC
CACGAACTTTATCCGCTCAAACAACCTTTCCCGCGGCGCTGTGCCGTCCCGGCTCCCTGGCTTGA
GCCTGCGACCGCTTCCAAGCGCGCTGGCAGCCCCGAAACCGGCCGGGCCGCTGGGCCCGCTGTCC
GAGGCCAACCGCACCATCCAGGGCGACGACGACGAGCCTCCGGGGGCCCCCAAGCCCGGGTTCCG
CGAGCTAGCCGCCAAGCCCGCGGAGAAATGGCTCCCCAAGCTTGGCCGGCTCCCCCAGCTCAAGG
GGTCGGTTTTTGCCAGCCACCAGGCGTTGCAGCTGGCAGTGGCGCTGGACGCGGGCGACAAACGC
ATTGCCACGGGGATGATCACCAGTGGCGAGCGCGATCTCGGTGCTCTGGGCCCAGAGTCCGCGGT
GGTGGACCTGGAGGAAGGCCACACCGAAAGTCGTGATACTGATAA
Right flanking sequence: Indices 99542 -- 100041
AGTTGCCCAGGGAAAACCAGTTGCCCAGGGCAGAAAACCAGTTGCCCAAGTTGGCTGGGAGCGAA
ACCAGGGCTGAAAAGGCTGAAAACAGACCCGGAAGCAGTGCCCAGCGCAGCCTCGCCCGCTCGCC
CCGAAACCACCCCGACAGCCTCGACCAGTGCTTGGTGGAGGACGAGGCCGAGCTCTTGGAGTACG
AGCACGACCTCGTGTCCGCACAGGCGCTGGCGCCGCCGCCCGCGTGGATGCGCATTGTCAGCGCC
CGCCAGGTGCGCCAGAACTACTTTGCGGACCACGGCCCGCTCCCCGAGGTGGACGCTGAGGCTGG
GTTTGCCAAGAAACGGGCGGCGGACGAGGCCCGCGAGCGGTTTGCCAAGTTCATGACGCTCCGGG
CCAACGCCGAGGTGCAGCGGTTCCGGCCGTATGTGCTGCTGTGGCCCGCTTTCTTGAAACGGGCC
GACAAGTGGCGGGCCAACCGGATGGCGGCGTTGGTGGAGGGGGCT
Found at i:99550 original size:21 final size:21
Alignment explanation
Indices: 99510--99591 Score: 98
Period size: 21 Copynumber: 4.0 Consensus size: 21
99500 ACCGGTCGCC
* **
99510 GGCGGAAAACCGGTCACCCAA
1 GGCGGAAAACCAGTTGCCCAA
99531 GGCGGAAAACCAGTTGCCC-A
1 GGCGGAAAACCAGTTGCCCAA
*
99551 -G-GGAAAACCAGTTGCCCAG
1 GGCGGAAAACCAGTTGCCCAA
*
99570 GGCAGAAAACCAGTTGCCCAA
1 GGCGGAAAACCAGTTGCCCAA
99591 G
1 G
99592 TTGGCTGGGA
Statistics
Matches: 52, Mismatches: 6, Indels: 6
0.81 0.09 0.09
Matches are distributed among these distances:
18 16 0.31
19 1 0.02
20 2 0.04
21 33 0.63
ACGTcount: A:0.33, C:0.29, G:0.29, T:0.09
Consensus pattern (21 bp):
GGCGGAAAACCAGTTGCCCAA
Left flanking sequence: Indices 99010 -- 99509
CGCCCGCTCGACGACGACAACCCGTTCCACGACACGGGCAAGCGGGTCACCACGAACTTTATCCG
CTCAAACAACCTTTCCCGCGGCGCTGTGCCGTCCCGGCTCCCTGGCTTGAGCCTGCGACCGCTTC
CAAGCGCGCTGGCAGCCCCGAAACCGGCCGGGCCGCTGGGCCCGCTGTCCGAGGCCAACCGCACC
ATCCAGGGCGACGACGACGAGCCTCCGGGGGCCCCCAAGCCCGGGTTCCGCGAGCTAGCCGCCAA
GCCCGCGGAGAAATGGCTCCCCAAGCTTGGCCGGCTCCCCCAGCTCAAGGGGTCGGTTTTTGCCA
GCCACCAGGCGTTGCAGCTGGCAGTGGCGCTGGACGCGGGCGACAAACGCATTGCCACGGGGATG
ATCACCAGTGGCGAGCGCGATCTCGGTGCTCTGGGCCCAGAGTCCGCGGTGGTGGACCTGGAGGA
AGGCCACACCGAAAGTCGTGATACTGATAAGGAAAACCGGTCGCC
Right flanking sequence: Indices 99592 -- 100091
TTGGCTGGGAGCGAAACCAGGGCTGAAAAGGCTGAAAACAGACCCGGAAGCAGTGCCCAGCGCAG
CCTCGCCCGCTCGCCCCGAAACCACCCCGACAGCCTCGACCAGTGCTTGGTGGAGGACGAGGCCG
AGCTCTTGGAGTACGAGCACGACCTCGTGTCCGCACAGGCGCTGGCGCCGCCGCCCGCGTGGATG
CGCATTGTCAGCGCCCGCCAGGTGCGCCAGAACTACTTTGCGGACCACGGCCCGCTCCCCGAGGT
GGACGCTGAGGCTGGGTTTGCCAAGAAACGGGCGGCGGACGAGGCCCGCGAGCGGTTTGCCAAGT
TCATGACGCTCCGGGCCAACGCCGAGGTGCAGCGGTTCCGGCCGTATGTGCTGCTGTGGCCCGCT
TTCTTGAAACGGGCCGACAAGTGGCGGGCCAACCGGATGGCGGCGTTGGTGGAGGGGGCTGAGCG
CGCGGTGGAGGCCGACGCGGTGGAGTTGTGGCCCGGGCGGGCCGA
Found at i:99556 original size:39 final size:39
Alignment explanation
Indices: 99513--99589 Score: 109
Period size: 39 Copynumber: 2.0 Consensus size: 39
99503 GGTCGCCGGC
* *
99513 GGAAAACCGGTCACCCAAGGCGGAAAACCAGTTGCCCAG
1 GGAAAACCAGTCACCCAAGGCAGAAAACCAGTTGCCCAG
** *
99552 GGAAAACCAGTTGCCCAGGGCAGAAAACCAGTTGCCCA
1 GGAAAACCAGTCACCCAAGGCAGAAAACCAGTTGCCCA
99590 AGTTGGCTGG
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
39 33 1.00
ACGTcount: A:0.34, C:0.30, G:0.27, T:0.09
Consensus pattern (39 bp):
GGAAAACCAGTCACCCAAGGCAGAAAACCAGTTGCCCAG
Left flanking sequence: Indices 99013 -- 99512
CCGCTCGACGACGACAACCCGTTCCACGACACGGGCAAGCGGGTCACCACGAACTTTATCCGCTC
AAACAACCTTTCCCGCGGCGCTGTGCCGTCCCGGCTCCCTGGCTTGAGCCTGCGACCGCTTCCAA
GCGCGCTGGCAGCCCCGAAACCGGCCGGGCCGCTGGGCCCGCTGTCCGAGGCCAACCGCACCATC
CAGGGCGACGACGACGAGCCTCCGGGGGCCCCCAAGCCCGGGTTCCGCGAGCTAGCCGCCAAGCC
CGCGGAGAAATGGCTCCCCAAGCTTGGCCGGCTCCCCCAGCTCAAGGGGTCGGTTTTTGCCAGCC
ACCAGGCGTTGCAGCTGGCAGTGGCGCTGGACGCGGGCGACAAACGCATTGCCACGGGGATGATC
ACCAGTGGCGAGCGCGATCTCGGTGCTCTGGGCCCAGAGTCCGCGGTGGTGGACCTGGAGGAAGG
CCACACCGAAAGTCGTGATACTGATAAGGAAAACCGGTCGCCGGC
Right flanking sequence: Indices 99590 -- 100089
AGTTGGCTGGGAGCGAAACCAGGGCTGAAAAGGCTGAAAACAGACCCGGAAGCAGTGCCCAGCGC
AGCCTCGCCCGCTCGCCCCGAAACCACCCCGACAGCCTCGACCAGTGCTTGGTGGAGGACGAGGC
CGAGCTCTTGGAGTACGAGCACGACCTCGTGTCCGCACAGGCGCTGGCGCCGCCGCCCGCGTGGA
TGCGCATTGTCAGCGCCCGCCAGGTGCGCCAGAACTACTTTGCGGACCACGGCCCGCTCCCCGAG
GTGGACGCTGAGGCTGGGTTTGCCAAGAAACGGGCGGCGGACGAGGCCCGCGAGCGGTTTGCCAA
GTTCATGACGCTCCGGGCCAACGCCGAGGTGCAGCGGTTCCGGCCGTATGTGCTGCTGTGGCCCG
CTTTCTTGAAACGGGCCGACAAGTGGCGGGCCAACCGGATGGCGGCGTTGGTGGAGGGGGCTGAG
CGCGCGGTGGAGGCCGACGCGGTGGAGTTGTGGCCCGGGCGGGCC
Found at i:99557 original size:18 final size:19
Alignment explanation
Indices: 99534--99589 Score: 87
Period size: 18 Copynumber: 2.9 Consensus size: 19
99524 CACCCAAGGC
99534 GGAAAACCAGTTGCCCA-G
1 GGAAAACCAGTTGCCCAGG
99552 GGAAAACCAGTTGCCCAGG
1 GGAAAACCAGTTGCCCAGG
99571 GCAGAAAACCAGTTGCCCA
1 G--GAAAACCAGTTGCCCA
99590 AGTTGGCTGG
Statistics
Matches: 35, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
18 17 0.49
19 2 0.06
21 16 0.46
ACGTcount: A:0.34, C:0.29, G:0.27, T:0.11
Consensus pattern (19 bp):
GGAAAACCAGTTGCCCAGG
Left flanking sequence: Indices 99034 -- 99533
TTCCACGACACGGGCAAGCGGGTCACCACGAACTTTATCCGCTCAAACAACCTTTCCCGCGGCGC
TGTGCCGTCCCGGCTCCCTGGCTTGAGCCTGCGACCGCTTCCAAGCGCGCTGGCAGCCCCGAAAC
CGGCCGGGCCGCTGGGCCCGCTGTCCGAGGCCAACCGCACCATCCAGGGCGACGACGACGAGCCT
CCGGGGGCCCCCAAGCCCGGGTTCCGCGAGCTAGCCGCCAAGCCCGCGGAGAAATGGCTCCCCAA
GCTTGGCCGGCTCCCCCAGCTCAAGGGGTCGGTTTTTGCCAGCCACCAGGCGTTGCAGCTGGCAG
TGGCGCTGGACGCGGGCGACAAACGCATTGCCACGGGGATGATCACCAGTGGCGAGCGCGATCTC
GGTGCTCTGGGCCCAGAGTCCGCGGTGGTGGACCTGGAGGAAGGCCACACCGAAAGTCGTGATAC
TGATAAGGAAAACCGGTCGCCGGCGGAAAACCGGTCACCCAAGGC
Right flanking sequence: Indices 99590 -- 100089
AGTTGGCTGGGAGCGAAACCAGGGCTGAAAAGGCTGAAAACAGACCCGGAAGCAGTGCCCAGCGC
AGCCTCGCCCGCTCGCCCCGAAACCACCCCGACAGCCTCGACCAGTGCTTGGTGGAGGACGAGGC
CGAGCTCTTGGAGTACGAGCACGACCTCGTGTCCGCACAGGCGCTGGCGCCGCCGCCCGCGTGGA
TGCGCATTGTCAGCGCCCGCCAGGTGCGCCAGAACTACTTTGCGGACCACGGCCCGCTCCCCGAG
GTGGACGCTGAGGCTGGGTTTGCCAAGAAACGGGCGGCGGACGAGGCCCGCGAGCGGTTTGCCAA
GTTCATGACGCTCCGGGCCAACGCCGAGGTGCAGCGGTTCCGGCCGTATGTGCTGCTGTGGCCCG
CTTTCTTGAAACGGGCCGACAAGTGGCGGGCCAACCGGATGGCGGCGTTGGTGGAGGGGGCTGAG
CGCGCGGTGGAGGCCGACGCGGTGGAGTTGTGGCCCGGGCGGGCC
Found at i:100231 original size:21 final size:20
Alignment explanation
Indices: 100207--100300 Score: 73
Period size: 21 Copynumber: 4.5 Consensus size: 20
100197 GGTTGAAAGT
100207 GGAAACCAGATTGAGACTACG
1 GGAAACCAGATTGAGACTA-G
* * *
100228 GGAATCAAGGTTGAGACTAG
1 GGAAACCAGATTGAGACTAG
* * *
100248 TGGAAACCAGGTTGAG-TTAATT
1 -GGAAACCAGATTGAGACT-A-G
100270 GGAAACCAGATTGAGACTAG
1 GGAAACCAGATTGAGACTAG
*
100290 TGTAAACCAGA
1 -GGAAACCAGA
100301 CTCAGGCTAC
Statistics
Matches: 57, Mismatches: 11, Indels: 10
0.73 0.14 0.13
Matches are distributed among these distances:
20 2 0.04
21 54 0.95
22 1 0.02
ACGTcount: A:0.37, C:0.14, G:0.29, T:0.20
Consensus pattern (20 bp):
GGAAACCAGATTGAGACTAG
Left flanking sequence: Indices 99707 -- 100206
TGGAGGACGAGGCCGAGCTCTTGGAGTACGAGCACGACCTCGTGTCCGCACAGGCGCTGGCGCCG
CCGCCCGCGTGGATGCGCATTGTCAGCGCCCGCCAGGTGCGCCAGAACTACTTTGCGGACCACGG
CCCGCTCCCCGAGGTGGACGCTGAGGCTGGGTTTGCCAAGAAACGGGCGGCGGACGAGGCCCGCG
AGCGGTTTGCCAAGTTCATGACGCTCCGGGCCAACGCCGAGGTGCAGCGGTTCCGGCCGTATGTG
CTGCTGTGGCCCGCTTTCTTGAAACGGGCCGACAAGTGGCGGGCCAACCGGATGGCGGCGTTGGT
GGAGGGGGCTGAGCGCGCGGTGGAGGCCGACGCGGTGGAGTTGTGGCCCGGGCGGGCCGAGACGT
CGTTCTTGGGGGTGGCCAAGGACGGGAGCGAGGAGACACGCGCGATGGAGGTGGTGGGAGAAAAG
GAAGAAGGTGTTAGTCAGGTAAAGAAAGAGAACGAGGTTGAAAGT
Right flanking sequence: Indices 100301 -- 100800
CTCAGGCTACAGAACTCATAAAAGAGGATTTTGGCACGCTTGAAACCCATCTCAGCCAGGGCCAG
ATCTCCCAGTCTCAAACTCTGCAATCTCACACCCTCCAATCTCACACTCAATCCCTCCAGGCCCA
ACCAGAGACTCATTTGACCCATTCGACCCATTCGACCCATTCAACCCATTCGACCCAGAGCCTAG
CCACCCAGTCGAACCAGAATCCACACACCACCCAGAATCCACCCACCACCCACCACCCACCCGCT
CACCCGTCGCTTTCCCGCATCAAACGGCCGGTGCTCCCCGAGCCCGTGGACGACTACGACGGCGT
GGCGCTCGAGGTGCTCGAGGACATGTCCCAGCTCGAAGAAACGTTCCCCGTGCTCTCGTCGGACT
ACCGCCTCCTCGACAAGATCGGCGAAGGCACCTTTTCCACCGTGTACAAGGCCGAGGCCCTCAAC
GACCGCGTGGTGATGGGCTTCAACGGCTGGCGCAACCCAGGCTCG
Found at i:100393 original size:15 final size:15
Alignment explanation
Indices: 100375--100414 Score: 53
Period size: 15 Copynumber: 2.7 Consensus size: 15
100365 GATCTCCCAG
* *
100375 TCTCAAACTCTGCAA
1 TCTCACACTCTCCAA
*
100390 TCTCACACCCTCCAA
1 TCTCACACTCTCCAA
100405 TCTCACACTC
1 TCTCACACTC
100415 AATCCCTCCA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.28, C:0.45, G:0.03, T:0.25
Consensus pattern (15 bp):
TCTCACACTCTCCAA
Left flanking sequence: Indices 99875 -- 100374
AGAAACGGGCGGCGGACGAGGCCCGCGAGCGGTTTGCCAAGTTCATGACGCTCCGGGCCAACGCC
GAGGTGCAGCGGTTCCGGCCGTATGTGCTGCTGTGGCCCGCTTTCTTGAAACGGGCCGACAAGTG
GCGGGCCAACCGGATGGCGGCGTTGGTGGAGGGGGCTGAGCGCGCGGTGGAGGCCGACGCGGTGG
AGTTGTGGCCCGGGCGGGCCGAGACGTCGTTCTTGGGGGTGGCCAAGGACGGGAGCGAGGAGACA
CGCGCGATGGAGGTGGTGGGAGAAAAGGAAGAAGGTGTTAGTCAGGTAAAGAAAGAGAACGAGGT
TGAAAGTGGAAACCAGATTGAGACTACGGGAATCAAGGTTGAGACTAGTGGAAACCAGGTTGAGT
TAATTGGAAACCAGATTGAGACTAGTGTAAACCAGACTCAGGCTACAGAACTCATAAAAGAGGAT
TTTGGCACGCTTGAAACCCATCTCAGCCAGGGCCAGATCTCCCAG
Right flanking sequence: Indices 100415 -- 100914
AATCCCTCCAGGCCCAACCAGAGACTCATTTGACCCATTCGACCCATTCGACCCATTCAACCCAT
TCGACCCAGAGCCTAGCCACCCAGTCGAACCAGAATCCACACACCACCCAGAATCCACCCACCAC
CCACCACCCACCCGCTCACCCGTCGCTTTCCCGCATCAAACGGCCGGTGCTCCCCGAGCCCGTGG
ACGACTACGACGGCGTGGCGCTCGAGGTGCTCGAGGACATGTCCCAGCTCGAAGAAACGTTCCCC
GTGCTCTCGTCGGACTACCGCCTCCTCGACAAGATCGGCGAAGGCACCTTTTCCACCGTGTACAA
GGCCGAGGCCCTCAACGACCGCGTGGTGATGGGCTTCAACGGCTGGCGCAACCCAGGCTCGACGC
TGGCGGCAAAGAAGAACCCCATCGTCGCCCTCAAGCAGATCTACGTCACGTCGTCGCCCGCGCGC
ATCCACAACGAGCTCAACTTGCTCTACATCCTCTCGGGCAACCAG
Found at i:100458 original size:9 final size:9
Alignment explanation
Indices: 100441--100487 Score: 76
Period size: 9 Copynumber: 5.2 Consensus size: 9
100431 ACCAGAGACT
*
100441 CATTTGACC
1 CATTCGACC
100450 CATTCGACC
1 CATTCGACC
100459 CATTCGACC
1 CATTCGACC
*
100468 CATTCAACC
1 CATTCGACC
100477 CATTCGACC
1 CATTCGACC
100486 CA
1 CA
100488 GAGCCTAGCC
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
9 35 1.00
ACGTcount: A:0.26, C:0.43, G:0.09, T:0.23
Consensus pattern (9 bp):
CATTCGACC
Left flanking sequence: Indices 99941 -- 100440
AGGTGCAGCGGTTCCGGCCGTATGTGCTGCTGTGGCCCGCTTTCTTGAAACGGGCCGACAAGTGG
CGGGCCAACCGGATGGCGGCGTTGGTGGAGGGGGCTGAGCGCGCGGTGGAGGCCGACGCGGTGGA
GTTGTGGCCCGGGCGGGCCGAGACGTCGTTCTTGGGGGTGGCCAAGGACGGGAGCGAGGAGACAC
GCGCGATGGAGGTGGTGGGAGAAAAGGAAGAAGGTGTTAGTCAGGTAAAGAAAGAGAACGAGGTT
GAAAGTGGAAACCAGATTGAGACTACGGGAATCAAGGTTGAGACTAGTGGAAACCAGGTTGAGTT
AATTGGAAACCAGATTGAGACTAGTGTAAACCAGACTCAGGCTACAGAACTCATAAAAGAGGATT
TTGGCACGCTTGAAACCCATCTCAGCCAGGGCCAGATCTCCCAGTCTCAAACTCTGCAATCTCAC
ACCCTCCAATCTCACACTCAATCCCTCCAGGCCCAACCAGAGACT
Right flanking sequence: Indices 100488 -- 100987
GAGCCTAGCCACCCAGTCGAACCAGAATCCACACACCACCCAGAATCCACCCACCACCCACCACC
CACCCGCTCACCCGTCGCTTTCCCGCATCAAACGGCCGGTGCTCCCCGAGCCCGTGGACGACTAC
GACGGCGTGGCGCTCGAGGTGCTCGAGGACATGTCCCAGCTCGAAGAAACGTTCCCCGTGCTCTC
GTCGGACTACCGCCTCCTCGACAAGATCGGCGAAGGCACCTTTTCCACCGTGTACAAGGCCGAGG
CCCTCAACGACCGCGTGGTGATGGGCTTCAACGGCTGGCGCAACCCAGGCTCGACGCTGGCGGCA
AAGAAGAACCCCATCGTCGCCCTCAAGCAGATCTACGTCACGTCGTCGCCCGCGCGCATCCACAA
CGAGCTCAACTTGCTCTACATCCTCTCGGGCAACCAGCACGTGGCCCCGCTCCTCCAGGTGCTCC
GCCACCAGGACCAGGTGCTCGCCATCCTCCCCTACTACGCCCACG
Found at i:100532 original size:18 final size:18
Alignment explanation
Indices: 100509--100547 Score: 69
Period size: 18 Copynumber: 2.2 Consensus size: 18
100499 CCCAGTCGAA
100509 CCAGAATCCACACACCAC
1 CCAGAATCCACACACCAC
*
100527 CCAGAATCCACCCACCAC
1 CCAGAATCCACACACCAC
100545 CCA
1 CCA
100548 CCACCCACCC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.36, C:0.54, G:0.05, T:0.05
Consensus pattern (18 bp):
CCAGAATCCACACACCAC
Left flanking sequence: Indices 100009 -- 100508
GCCAACCGGATGGCGGCGTTGGTGGAGGGGGCTGAGCGCGCGGTGGAGGCCGACGCGGTGGAGTT
GTGGCCCGGGCGGGCCGAGACGTCGTTCTTGGGGGTGGCCAAGGACGGGAGCGAGGAGACACGCG
CGATGGAGGTGGTGGGAGAAAAGGAAGAAGGTGTTAGTCAGGTAAAGAAAGAGAACGAGGTTGAA
AGTGGAAACCAGATTGAGACTACGGGAATCAAGGTTGAGACTAGTGGAAACCAGGTTGAGTTAAT
TGGAAACCAGATTGAGACTAGTGTAAACCAGACTCAGGCTACAGAACTCATAAAAGAGGATTTTG
GCACGCTTGAAACCCATCTCAGCCAGGGCCAGATCTCCCAGTCTCAAACTCTGCAATCTCACACC
CTCCAATCTCACACTCAATCCCTCCAGGCCCAACCAGAGACTCATTTGACCCATTCGACCCATTC
GACCCATTCAACCCATTCGACCCAGAGCCTAGCCACCCAGTCGAA
Right flanking sequence: Indices 100548 -- 101047
CCACCCACCCGCTCACCCGTCGCTTTCCCGCATCAAACGGCCGGTGCTCCCCGAGCCCGTGGACG
ACTACGACGGCGTGGCGCTCGAGGTGCTCGAGGACATGTCCCAGCTCGAAGAAACGTTCCCCGTG
CTCTCGTCGGACTACCGCCTCCTCGACAAGATCGGCGAAGGCACCTTTTCCACCGTGTACAAGGC
CGAGGCCCTCAACGACCGCGTGGTGATGGGCTTCAACGGCTGGCGCAACCCAGGCTCGACGCTGG
CGGCAAAGAAGAACCCCATCGTCGCCCTCAAGCAGATCTACGTCACGTCGTCGCCCGCGCGCATC
CACAACGAGCTCAACTTGCTCTACATCCTCTCGGGCAACCAGCACGTGGCCCCGCTCCTCCAGGT
GCTCCGCCACCAGGACCAGGTGCTCGCCATCCTCCCCTACTACGCCCACGGCGACTTCCGCGACT
TCTACCGCGATCTCCCGGTCAAGGGGATCAAAAACTATCTCTGGG
Found at i:102079 original size:11 final size:11
Alignment explanation
Indices: 102059--102096 Score: 67
Period size: 11 Copynumber: 3.5 Consensus size: 11
102049 TGGCAGCTTA
*
102059 AAGCTGTGGTT
1 AAGCTATGGTT
102070 AAGCTATGGTT
1 AAGCTATGGTT
102081 AAGCTATGGTT
1 AAGCTATGGTT
102092 AAGCT
1 AAGCT
102097 GTGATTATTT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
11 26 1.00
ACGTcount: A:0.26, C:0.11, G:0.29, T:0.34
Consensus pattern (11 bp):
AAGCTATGGTT
Left flanking sequence: Indices 101559 -- 102058
GGGCAACTTGGTGCACATCTTGCACGACATGTTGCGGCACGAGGTGGACGTGGGCGCGTTCCCGC
CCGACCTGGTGGTGCACGAGACGCTTGCGGTGTTTACTGAGAAGGGCGACACTCTCCAGCGGCCG
AAGGGCGGCGACGACCCGGCGCTGGTGAAGGCGCGCGAGAACTACTACGAGCACAAGTGGTTGCT
CCAGGTGATAGCGCTGTGTCTTGCGTGGGACCCGAGCAAGCGGGCGCTGGCGCTGGAGGTGTTGA
AGCACCAGTACTTTGCCGAGCTCCGCGAGCCCGAGGACGAGGTGATTTTTTAGAGAAGGTGAGGA
TTGATTTAGGCTAGAGCTACGGCTCAGCCCGTTTATATTTAAGAGTCTTCGACTCATGAGTAATG
ATACCCATAAATAAAGGCATTGGATAGGAGGGGATGAAGCGGTTATTGAGGTTGATGGGGATGGA
TGGAAGGTCTGCTATGATGTAGATTCTTAGCCTTATGGCAGCTTA
Right flanking sequence: Indices 102097 -- 102596
GTGATTATTTAGCTAAGGCTTACAGCAATGGCCTAAAGCAATGGGTTAAAGCTATCTCTCGAAGC
TATGGCTCAATGCTATGGCTCAAAGCTATGACTCAAAAAAATGACTGAAAGCTGTGGTCCCAAGC
TATGTTTCTATGGCTTCAACCAATGGCTCCATGAATCGTCTACTGTGTCCCCAGATCACGTTAAA
CATTACAAATGAAGGCGTTGTACGTAGGTAAGGCATAGGTCAGTAAATTTGACGACACTATCGCT
GGATTTATCGGCAGCTGTGGGGTAATTTTGCAGTCCGTAGGGCCAACTCACTGCTATAGCTCCAA
GACTTCCCTCTGCTTAACGTAAATTCGGTAATCTTACACTCATGACTACTACTCCCATAGACGAG
ACCTTAGGCTGTGAAACAAACAAAGCTGTGGTTGGAATCTTTCTGGTGGACTGCCCACACGTTGT
TGCACCGTGGCCACGGGGCTGACCGTTGAATATGCCATCTGACAG
Found at i:102176 original size:13 final size:13
Alignment explanation
Indices: 102144--102198 Score: 65
Period size: 13 Copynumber: 4.2 Consensus size: 13
102134 GCAATGGGTT
**
102144 AAAGCTATCTCTC
1 AAAGCTATGGCTC
*
102157 GAAGCTATGGCTC
1 AAAGCTATGGCTC
*
102170 AATGCTATGGCTC
1 AAAGCTATGGCTC
*
102183 AAAGCTATGACTC
1 AAAGCTATGGCTC
102196 AAA
1 AAA
102199 AAAATGACTG
Statistics
Matches: 35, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
13 35 1.00
ACGTcount: A:0.33, C:0.24, G:0.18, T:0.25
Consensus pattern (13 bp):
AAAGCTATGGCTC
Left flanking sequence: Indices 101644 -- 102143
ACGCTTGCGGTGTTTACTGAGAAGGGCGACACTCTCCAGCGGCCGAAGGGCGGCGACGACCCGGC
GCTGGTGAAGGCGCGCGAGAACTACTACGAGCACAAGTGGTTGCTCCAGGTGATAGCGCTGTGTC
TTGCGTGGGACCCGAGCAAGCGGGCGCTGGCGCTGGAGGTGTTGAAGCACCAGTACTTTGCCGAG
CTCCGCGAGCCCGAGGACGAGGTGATTTTTTAGAGAAGGTGAGGATTGATTTAGGCTAGAGCTAC
GGCTCAGCCCGTTTATATTTAAGAGTCTTCGACTCATGAGTAATGATACCCATAAATAAAGGCAT
TGGATAGGAGGGGATGAAGCGGTTATTGAGGTTGATGGGGATGGATGGAAGGTCTGCTATGATGT
AGATTCTTAGCCTTATGGCAGCTTAAAGCTGTGGTTAAGCTATGGTTAAGCTATGGTTAAGCTGT
GATTATTTAGCTAAGGCTTACAGCAATGGCCTAAAGCAATGGGTT
Right flanking sequence: Indices 102199 -- 102698
AAAATGACTGAAAGCTGTGGTCCCAAGCTATGTTTCTATGGCTTCAACCAATGGCTCCATGAATC
GTCTACTGTGTCCCCAGATCACGTTAAACATTACAAATGAAGGCGTTGTACGTAGGTAAGGCATA
GGTCAGTAAATTTGACGACACTATCGCTGGATTTATCGGCAGCTGTGGGGTAATTTTGCAGTCCG
TAGGGCCAACTCACTGCTATAGCTCCAAGACTTCCCTCTGCTTAACGTAAATTCGGTAATCTTAC
ACTCATGACTACTACTCCCATAGACGAGACCTTAGGCTGTGAAACAAACAAAGCTGTGGTTGGAA
TCTTTCTGGTGGACTGCCCACACGTTGTTGCACCGTGGCCACGGGGCTGACCGTTGAATATGCCA
TCTGACAGGTACGTAATGGCACATAACAGCATGACCGTTGAGCTGTTAAACAGCACAGGGACAGA
GCACAAAAAACCACCTGGAGTAAAGAAAACAAGGGGTCTAAGACA
Found at i:108877 original size:15 final size:15
Alignment explanation
Indices: 108857--108887 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
108847 CCCCAATCGT
108857 TCGCCGAGCCTTCCC
1 TCGCCGAGCCTTCCC
108872 TCGCCGAGCCTTCCC
1 TCGCCGAGCCTTCCC
108887 T
1 T
108888 TGGCCCGAAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.06, C:0.52, G:0.19, T:0.23
Consensus pattern (15 bp):
TCGCCGAGCCTTCCC
Left flanking sequence: Indices 108357 -- 108856
CCATTTACGATCCGGGCCAACCGAAAATTGTTGGGTGATCACTATGGAGAAAGCCACCCACGAGT
TCAATGGAACAATACCTGGAAAGGACGCATTGTTGTGTCTCACTTCGCGAATCACTCGGAGATGT
GTCAAACCGACCTGCGAAACCGGCCCGAGATTACTAATCACAGCCACGCGTACACAACGTGACAG
AACCTGGATCTGAGCCCAGGGTTTTTCTGCTTGTTGTGCGAGCGTGTCGGGATGCCTTGTTTAGC
GCGCTTAAAATTCCTTATTGAGCCGCGTTGTGAGCCCCGCAAAGAGGTCATGGCGCCATCACGAG
CCGCTAAATGGCTGAAGCAGGCCCGGCTTCGGAATCGGTAAGCCCGGGCACGTTCGGAGTGGTTG
TTTCCGCCGTATCTGCATTGGGCTCGCCCCCGCCCGACCCCAAGCGTTCTCTTGACAACAAATCA
ATTAGCCTTCCTACTTAGGGCAATCGCTTTTGTGTCCCCAATCGT
Right flanking sequence: Indices 108888 -- 109387
TGGCCCGAACAGCCACAGATCGCGAACACGGCCCCACCACCGATCCAAACGGTTGGAACAATAGG
ACCACACCCTTCACTGGCCCCCGGGCACCAAGGATCAAGCAAACCCCCAGAGTCATCTCGCATGG
TGCATCCGACCGGGGGTCCTGCACCGGTCCGGTGACCTGAGAACGTCGTCTAGTGTAGGTTTTAG
CGGTTAGAAATCGTAAATCCGAGCGGGAAACCACCGCGAAACCTTCCTATTGTTAGCGGGGCTGT
ACACACGTGTTGCGGCGGTGGCTATTGTCGCTGGAACCTGTCGGCACGGCAGAAATGACCTGCGT
CGGGGGACGTCACATCGGCAGACGGCTAAAACGGTGTCTGACAAAGGGGCACCGGACCACTGTTT
CCGAGGTTCCTCTCCTCAAGACAACGCTTCAGGGGTAAACCATACTCAATAAATGAGCCAACCAC
ACCAGTTTCAGCCTCCTAAGAAGCCTCTAGGCCTCTAGACTACCG
Found at i:117687 original size:13 final size:13
Alignment explanation
Indices: 117669--117717 Score: 82
Period size: 13 Copynumber: 3.8 Consensus size: 13
117659 GCAATTGGAG
117669 TGGTAGTGGTGGT
1 TGGTAGTGGTGGT
117682 TGGTAGTGGTGGT
1 TGGTAGTGGTGGT
117695 TGGT-GTGGTGGT
1 TGGTAGTGGTGGT
*
117707 TGGTTGTGGTG
1 TGGTAGTGGTG
117718 ACTACTGAGT
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
12 12 0.34
13 23 0.66
ACGTcount: A:0.04, C:0.00, G:0.55, T:0.41
Consensus pattern (13 bp):
TGGTAGTGGTGGT
Left flanking sequence: Indices 117169 -- 117668
CACGTCCATCATTTCCAGCCGGAGTTGTAGCAGCTGGGACGAGGTCAGAGGAGCCAGCCCGAGGC
CCAGCGAGGCCAAAACCAGGCCATAGAGCGTCAGCAACGCCGGCTCGCGGGTGATTTCCTCGTCG
GTGACCAGGTAGAGGATCCCCTTTTGCACCAAATCCACGAGAGCCCCGGGGAAGATCTTTTTCGT
GAACTCGTCGTTGTCGGGGCGGTCCACCAGCGCCAGACAGCCCAGGTGCTTATCTAGTGCGTAGG
CCGCAAGCTCGAACCCGGACTCCTGGAGGTAGCGCCACACCAAGTAGTTGAGTTCGCTCAGACTA
AGCGACATGGGCACAGGGTCGAGGTGGTTGTTGTGAGAAAAAAGTCCTGCGTGAGAATAAGTGGT
GGAGGTGGGACGGGTGTGTGAGGATTGGGAGTGTAGGGGTGGCTGGGGTCGCTGGGATGGTTGTG
GGAGGTATGGCTCGTGGGTTGGGTGGGTTATTTAGGCAATTGGAG
Right flanking sequence: Indices 117718 -- 118217
ACTACTGAGTGAGTGGTTGGTGGAAAGTACAATGGAGTAGTATCACACGCAACAATTAAACGGGA
AACTCTGAGGGTGGATGACGTGGCAACCTGGCTACGGAGTTAGTTACTCCCTTCGTACCCTTACC
CCTTCACCTGCAGTAGCCATCCACCATTCCTTACCTCGTCTTCGTGTTTTTCCCGCGCTCCAAAC
CAGCCAGCCTGACTCAAACAAACACGAAACACGGTACCGAAACGGGACATCAGGTGACGTCTACC
AAGCAGGTACTCTTAGCAGCATTCTTGAAACAGTATTTTTCTACATTCTCTTACATTCTTGGCAT
TCCCCGCTCGTACCATTCCCGTCCCGTTTCGTGCATTCCACCTGTCACTCCAGTCTCCGTCTTTC
ACCCTTCATCTCTCATTCGCACTAACCCTCGACTTTCCCTTTCTGCCTCTCCACCGTTCCCTGCT
TCTCGGTTCGCACACGCCCCTCGCCCATTCCTCGCCCGCACACGC
Found at i:117708 original size:25 final size:26
Alignment explanation
Indices: 117669--117717 Score: 82
Period size: 25 Copynumber: 1.9 Consensus size: 26
117659 GCAATTGGAG
117669 TGGTAGTGGTGGTTGGTAGTGGTGGT
1 TGGTAGTGGTGGTTGGTAGTGGTGGT
*
117695 TGGT-GTGGTGGTTGGTTGTGGTG
1 TGGTAGTGGTGGTTGGTAGTGGTG
117718 ACTACTGAGT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 18 0.82
26 4 0.18
ACGTcount: A:0.04, C:0.00, G:0.55, T:0.41
Consensus pattern (26 bp):
TGGTAGTGGTGGTTGGTAGTGGTGGT
Left flanking sequence: Indices 117169 -- 117668
CACGTCCATCATTTCCAGCCGGAGTTGTAGCAGCTGGGACGAGGTCAGAGGAGCCAGCCCGAGGC
CCAGCGAGGCCAAAACCAGGCCATAGAGCGTCAGCAACGCCGGCTCGCGGGTGATTTCCTCGTCG
GTGACCAGGTAGAGGATCCCCTTTTGCACCAAATCCACGAGAGCCCCGGGGAAGATCTTTTTCGT
GAACTCGTCGTTGTCGGGGCGGTCCACCAGCGCCAGACAGCCCAGGTGCTTATCTAGTGCGTAGG
CCGCAAGCTCGAACCCGGACTCCTGGAGGTAGCGCCACACCAAGTAGTTGAGTTCGCTCAGACTA
AGCGACATGGGCACAGGGTCGAGGTGGTTGTTGTGAGAAAAAAGTCCTGCGTGAGAATAAGTGGT
GGAGGTGGGACGGGTGTGTGAGGATTGGGAGTGTAGGGGTGGCTGGGGTCGCTGGGATGGTTGTG
GGAGGTATGGCTCGTGGGTTGGGTGGGTTATTTAGGCAATTGGAG
Right flanking sequence: Indices 117718 -- 118217
ACTACTGAGTGAGTGGTTGGTGGAAAGTACAATGGAGTAGTATCACACGCAACAATTAAACGGGA
AACTCTGAGGGTGGATGACGTGGCAACCTGGCTACGGAGTTAGTTACTCCCTTCGTACCCTTACC
CCTTCACCTGCAGTAGCCATCCACCATTCCTTACCTCGTCTTCGTGTTTTTCCCGCGCTCCAAAC
CAGCCAGCCTGACTCAAACAAACACGAAACACGGTACCGAAACGGGACATCAGGTGACGTCTACC
AAGCAGGTACTCTTAGCAGCATTCTTGAAACAGTATTTTTCTACATTCTCTTACATTCTTGGCAT
TCCCCGCTCGTACCATTCCCGTCCCGTTTCGTGCATTCCACCTGTCACTCCAGTCTCCGTCTTTC
ACCCTTCATCTCTCATTCGCACTAACCCTCGACTTTCCCTTTCTGCCTCTCCACCGTTCCCTGCT
TCTCGGTTCGCACACGCCCCTCGCCCATTCCTCGCCCGCACACGC
Found at i:142130 original size:7 final size:7
Alignment explanation
Indices: 142110--142147 Score: 67
Period size: 7 Copynumber: 5.3 Consensus size: 7
142100 AACCATCCAC
142110 CCAGCCA
1 CCAGCCA
142117 CCCAGCCA
1 -CCAGCCA
142125 CCAGCCA
1 CCAGCCA
142132 CCAGCCA
1 CCAGCCA
142139 CCAGCCA
1 CCAGCCA
142146 CC
1 CC
142148 CCCAACTCCC
Statistics
Matches: 30, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
7 23 0.77
8 7 0.23
ACGTcount: A:0.26, C:0.61, G:0.13, T:0.00
Consensus pattern (7 bp):
CCAGCCA
Left flanking sequence: Indices 141610 -- 142109
ACCCCCCTCGGGCTGATCATTCTCTGTCTCTTCATGTGTGCGTGTCGTGCTGGTGTTGCCTGGGT
GCAAGCCCGGCGCAAGGGCGAGCCCTATACGTTCTTTGAGCGGCCTCCTCCTATTGAGGCCGTTG
AGGTGGACTCGTACGGGTCGGTGGACGAGCCGGATCGGATGTCGGTGTCGTCGATGAAGAAGTCT
GAGGCGTAATTCAATTCTAGAGGCCACTGGCCGGTATAATAAGCGTATCGCATTAATACAATTTT
TGGTAAGAGGTTGGCTCGAGTTGGGGTTATCGAACTTGGTTGTATAGGAATAGGAGAAGCTCATC
GTGTGTAGTATTCCAATCATACCTGCCAGCCTAGTCTATCACCAGATTAGCACTACCAATCGTCC
TCAGTCATCAAAGATTCTCATTATCAAAACCACACTTGACCATTCCCTGGCCACCAAGAACACTT
TCCCACCCATCCTTCAAACTCTATTCCAACCATAGAACCATCCAC
Right flanking sequence: Indices 142148 -- 142647
CCCAACTCCCCTCCTCTCCTTTCCAATTATTCATTCATACATATAATACAGTTACCGTGTCCTAC
TCCGACGCCTCTTCCCGCGGCTTGTCAAAGAAATCAAGAATCGAGCACAGCGGGTGCAAGATAAA
CACCCGGCGCACGTCGCGGACCCCCGCGTCCTCGGGAAGAGCATCGCCACCCGTAGCCACCGACA
TCAACAACCGGTCGCGCACAAGCCGCTTGAGCACCTTGTAGGCCAACTTGCGCTCGGCATAGTAC
TCGCGCTCGGTGTTGAGGGTGTCCTCGACCTGGGTGAGGTAGTACTCGACAAGGTCCTCGCTGGA
GACCCCCTCTCCGCCGGCAGCGTCGTCGTCGGCCACCTTCTTCACCATCAACCGCATCATCAGGA
GATACTTCTCGTAGGGAATCGACTTGGATTGGCGCTCTTCCGCGGGAGGAGCCACCTGTGCCGGC
TGCGACGGCGCCTCGGGCGCGTCCATGGGAGTGTCCTCCTCGGGC
Found at i:142684 original size:15 final size:15
Alignment explanation
Indices: 142664--142709 Score: 92
Period size: 15 Copynumber: 3.1 Consensus size: 15
142654 TGGGGCTCGT
142664 CGTCGTCCATCTCCA
1 CGTCGTCCATCTCCA
142679 CGTCGTCCATCTCCA
1 CGTCGTCCATCTCCA
142694 CGTCGTCCATCTCCA
1 CGTCGTCCATCTCCA
142709 C
1 C
142710 CCGGATAATC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 31 1.00
ACGTcount: A:0.13, C:0.48, G:0.13, T:0.26
Consensus pattern (15 bp):
CGTCGTCCATCTCCA
Left flanking sequence: Indices 142164 -- 142663
TCCTTTCCAATTATTCATTCATACATATAATACAGTTACCGTGTCCTACTCCGACGCCTCTTCCC
GCGGCTTGTCAAAGAAATCAAGAATCGAGCACAGCGGGTGCAAGATAAACACCCGGCGCACGTCG
CGGACCCCCGCGTCCTCGGGAAGAGCATCGCCACCCGTAGCCACCGACATCAACAACCGGTCGCG
CACAAGCCGCTTGAGCACCTTGTAGGCCAACTTGCGCTCGGCATAGTACTCGCGCTCGGTGTTGA
GGGTGTCCTCGACCTGGGTGAGGTAGTACTCGACAAGGTCCTCGCTGGAGACCCCCTCTCCGCCG
GCAGCGTCGTCGTCGGCCACCTTCTTCACCATCAACCGCATCATCAGGAGATACTTCTCGTAGGG
AATCGACTTGGATTGGCGCTCTTCCGCGGGAGGAGCCACCTGTGCCGGCTGCGACGGCGCCTCGG
GCGCGTCCATGGGAGTGTCCTCCTCGGGCGCCGCCTGGGGCTCGT
Right flanking sequence: Indices 142710 -- 143209
CCGGATAATCAGCTGCCGCAACAAGTTGTACGCCTCGTTGACAAACGCCTCGGTGATCCACATCG
AGCAGTTTGCCCGGGCAATCGCCTCCAGCAACCGCACCATCAGCTCGAGCTGCCGCACGGTGATG
CGGTACGACAGCCGGCCCAACCCCTGGGCGTCGTCCTCGCGCAACTGGCGGTACTTGTCCACCAA
CATCTGGCTGGCCTCGTGGGTGAGCCGCGGCTTGAACGTGCGGGCGTACTTGAGGTACCGTGCCA
ACTGCTCGGCCAGGTACGGCGGGTTGATGGCAGAGTCTCGCAACATGTGCAAGTCGACGATGTGC
GCCGCCAACTCGGTGTCGACCCGCTCGTTGCAGTCGTCCACCAACACGAAAAAGAGGTCGAACCG
CAGCATGATCGGTGCCGTCATGTTGAGGTTGGCCCGCAACGAGTGCTTTTTGTTGTAGCGGCCGC
CGATGGGGTTCGCTGCCGCCAAGATCAGCGTGCGTGCGTTCAAGG
Found at i:151076 original size:11 final size:11
Alignment explanation
Indices: 151060--151087 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
151050 GAAGGGTAGG
151060 CACAGGATAGA
1 CACAGGATAGA
151071 CACAGGATAGA
1 CACAGGATAGA
151082 CACAGG
1 CACAGG
151088 GGTAAACACA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.43, C:0.21, G:0.29, T:0.07
Consensus pattern (11 bp):
CACAGGATAGA
Left flanking sequence: Indices 150560 -- 151059
CTCACATATACATCTGCCCAGTGCCATGGTAGTGTACTTGGTTGCTCTACTCAGTGGGCTTTGGT
GCAATCGCGCCTGCGGCAACATAGAACAAGACAAAGGCTACAGTGGTGCACGGGAATCCCCTCGC
AGCGGATGTGGGTCAAGCTGTGCTCCATGGTCGGGTGCTGGCATACTTCACAGTGGGTTTTCATT
GCCGTAACCCTGGAATTTGCAGTTTATATACTAAGCATTCCTAGACTCACCGTGAAACGGAATGC
GGTGAATTGACGCGCGATCCGGACCAACCCAAAAGCCCAACATGGGCCGATACAATGGCTACTGT
GGTGGCATGTGCCTTGTGGCAAGCGATTGTTCGCAGGCAAACACACAATGGGCCCATGACAGTCG
TTGCGGCCTTGGCAGCTGTCACGAGACGTTGGTGTTTCAGGATCAGGGAGAACGTCAAGGGGTCT
ACGGAGACAGGGGCACACAGGATATACAGGACTACGAAGGGTAGG
Right flanking sequence: Indices 151088 -- 151587
GGTAAACACAGGGGCTATAAACCGTCAGCTGGTAGCATACCATGGCGTGGCTCGGCCGCAGCACT
CCATCATTGACAGTAATAAACGTCGGAAATAGGTCGGAACGTCAAAAGACTACAACTCACCACGT
AAAATCCGAGCATCCCACACTCCTCTACATCGCGAGCACTCCCCACGCTCGCTCCCTTAGTCCAC
CTCGGCTCCCGTCTCCCCACACCGCCCGCGTCCGTACTACCAGCTCCCCCACGCGCCCCATGCAG
GGCGCGAGCTTTTCACCGTCACGACCGTCGCCAGTCCCTGCGAGCATGGACTACTACCTCGTATC
GCACGACCAGTACCAGTCGCCCGCCCCGACCCCGCTCGACAACCTCATAACGCTCTATGGGCTCG
AGCCCGTGGCCAGGCTGTTGGCGCGCACCAACCCCGACGGCAGCAAGGGGGTCAAGTTGCGGAAG
CTGTACAAGAACCACATCCAGGACTTGCCCGGCAAACACCAGATT
Found at i:152503 original size:21 final size:21
Alignment explanation
Indices: 152477--152521 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
152467 ATTTCCTGGC
*
152477 TGACGACAAACTCGGGCATGT
1 TGACGACAAACTCGGGCACGT
* *
152498 TGACGACAAAGTCGTGCACGT
1 TGACGACAAACTCGGGCACGT
152519 TGA
1 TGA
152522 GAAACCGCTT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.20
Consensus pattern (21 bp):
TGACGACAAACTCGGGCACGT
Left flanking sequence: Indices 151977 -- 152476
CTAGCTGTTTTGTTCTCCGATCCAGCTCCTTGAGTTCTTTCACCAACTTTTGGATTCTCGTTATA
CTCCCTGAGTCCTCCTTTTTTCCAACTCTTTTGAGTTCCCCGTTTCCACTCCTGAGCCAGTTCTT
TCGAGTCACCACCACGCGGTCGCCGGTCCGCCGGCTCATAAATACACCCACGCCGCTATCTGTCT
AATTTATTATGCCTAATGCCCGTAATATATACATCACTTAAACACCTCCACGTCCTCGTTGCGCT
CCTTCTTCACCCGAAGCTCTCCGTTTCGCGTCAGGGTGCGACTGAGGGGCCGGAGCAAGTCGCTC
AAGTTGACAAACCCCTGGTAGCTGCGGATCTGGCGCAACGGCTGGTCCTTGACCGCCAGCTTCGG
GGTCCGGCGCATCTTGTTGCGCAACAACCGGCCAATGTGTGCCAAGAGCGTCTTGATGAGCTCCT
TCTTCAACCGGTCGCCAATCTCCACCATCGAGGTGATTTCCTGGC
Right flanking sequence: Indices 152522 -- 153021
GAAACCGCTTGTACCCCTTGTTGAGCTTGATCAGCACCAGCACCGTCACCGGAGACACCCGGAAC
TTGCCCACGCTGAAGTAGTTTTTGGACCGCTTCATCATCTCGTTGAGGTCGTCCAGCTCCAGCAT
CTGCATCCACAGCAGCGAGATCCCGGGCCGCGAGAGCCCCAGCTTGCCCAGTTTCAGCGCCAGCG
AGCTCTCGGGCAGCTCGGAGTCGGCCTCGTCTTCCGCTTCCTTGTTCTCCTCCTCCTTTTCCGCG
GCCCGCTGAAGCACCGGCAGGTCCATGACGCCCTCGAGATCGGTCTGCAAGGCAAACTGCAACAT
CTTCTCGAGGGTCAACTCGTCTATCATGATCTGCAACGGCTGGGCCTCGATGTTGACGCTCTCGA
TCATCTTGATGCCACCCACCGACCGGTTGACGGTCCACTCGCCCGAAATGAGCGACTTGCCGTCA
AGGCTGCCGGCCAGGGTCTCGAGGTAGGGCGCAATCACCATCGGA
Found at i:162999 original size:114 final size:114
Alignment explanation
Indices: 162785--163293 Score: 393
Period size: 114 Copynumber: 4.5 Consensus size: 114
162775 TGCCGGCTGT
* * * * * *
162785 AAGTAGGCATCGGCGATGCCAGACTCCTTCTGGC-GGATCT-CTTCCGGGTCCCTAACCGGCTG-
1 AAGTACGCGTCGGCGATGGCAGACTCCTTCT-GCTGGATCTCCTT-CGGGTCCTTGA-CGGGTGC
* *
162847 GACAAACCCTGCTTCCCGCTGCTGGAACTCCTGCGGGTCCTGAACCGGTTG-
63 AACAAACCCTGCTTCCCGCTGCTGGAACTCCTGCGGGTCCTGGACCGGTTGC
* * * * *
162898 AAGGTATGCGTCGGCGATGGCAGACTCCTTCTGCTGGATCTCCTTGGGGTCTTTCACCGGTTG-A
1 AA-GTACGCGTCGGCGATGGCAGACTCCTTCTGCTGGATCTCCTTCGGGTCCTTGA-CGGGTGCA
* * * * * * *
162962 ACGAACCCTGCTTCTCTCTGCTGAAATTCCTGAGGGTCTTGGACCGGTTGC
64 ACAAACCCTGCTTCCCGCTGCTGGAACTCCTGCGGGTCCTGGACCGGTTGC
* * * * * * * * *
163013 AAATAGGCGTCCGCAATGGCCGACTCCTTTTGCTGGATTTCCTTCGGGTCCTTGACGGGCGCCAC
1 AAGTACGCGTCGGCGATGGCAGACTCCTTCTGCTGGATCTCCTTCGGGTCCTTGACGGGTGCAAC
* *
163078 AAACCCTGCTTCCCGCTCCTGGAACTCCTTCGGGTCCTGGACCGGTTGC
66 AAACCCTGCTTCCCGCTGCTGGAACTCCTGCGGGTCCTGGACCGGTTGC
* * ** * * * * * * *
163127 AAGTACGCGTCAGCCACCGCCGACTCCTGCTGCTGCATCTTCTTGGGGTCTTTGACGGGTGCTAC
1 AAGTACGCGTCGGCGATGGCAGACTCCTTCTGCTGGATCTCCTTCGGGTCCTTGACGGGTGCAAC
* ** * ** * *
163192 GAACCCTGCTTCCCGCT-CTTCAACCTCTTTAGGGTCCTGGACTGG-GGCC
66 AAACCCTGCTTCCCGCTGCTGGAA-CTCCTGCGGGTCCTGGACCGGTTG-C
* * * * * * *
163241 AAGTACGCGTCGGCTATGCCGGACTCCTTGTCCCGGATCTCCTGCGGGTCCTT
1 AAGTACGCGTCGGCGATGGCAGACTCCTTCTGCTGGATCTCCTTCGGGTCCTT
163294 CACAGGCTCC
Statistics
Matches: 313, Mismatches: 76, Indels: 13
0.78 0.19 0.03
Matches are distributed among these distances:
113 13 0.04
114 295 0.94
115 5 0.02
ACGTcount: A:0.14, C:0.32, G:0.28, T:0.26
Consensus pattern (114 bp):
AAGTACGCGTCGGCGATGGCAGACTCCTTCTGCTGGATCTCCTTCGGGTCCTTGACGGGTGCAAC
AAACCCTGCTTCCCGCTGCTGGAACTCCTGCGGGTCCTGGACCGGTTGC
Left flanking sequence: Indices 162285 -- 162784
GGTTCCAACAAGCAGACCAAGTACATGATGCCCTCTGGCCACAAGGCTTACCTTGTCCAGAACGT
CAAGGACCTTGAGCCTTTGCTCATGGTCAACAAGACCTGGGCTGCTGTCATTGGCCACGCCGTCT
CCGCCAAGAACAGAGTCGAGATTGTCAACAAGGCCAAGACTCTCGGTGTCAAGGTTGTCAACGCC
AAGGGCAGAGTCAACTTGTCCGCTTAATCAACTGGTTGGGTTTTTCTGTACTTTAGGCACATCAA
ATACACATAATGCGATAGAGCAAAAGTAGAGCGTAGGTGGTGATGAGGATACTTCCTATTTGAAA
ATCATCAATCAACGATTAATCCATAGTTGTGGTCTACAACTGTCACAAGACTTTGGCCATCCTCA
CGAAGAGGTAACCATTACAACGTGGTAGAATTCATAAACATTAATCTAGCTATCTCGTCTGAGTG
TAGGCGTCTTGGGCGTTCGCCTGGTTCGCCTGGTTTGCCGGCTGT
Right flanking sequence: Indices 163294 -- 163793
CACAGGCTCCTCAAACTTGTCTACAAGCTTCTCGAGCTTGCCCTTGAGGCCCTTGTACTCCTTCT
TCTCTCCGGAGTGGGTGTGCTCACGTGACTCGGAGTTAGTGTCGAGCTGGGGGTCGTTGCCAGCG
GCGTAGGCGTTGGGCTGGGCAGCCACGGGGTCGGTCGCGGGCACAGTGCCCTCGGGAACGGTGTT
GGACATGGTGTTACCAAATAACCGGATCAATCGGTTGCTTGGGTCGCTTGCTCTCGGGATTGTGC
AGGACTAAGGCCGAGGACCGATGCCAGAGCATTGTTGAGGCGAGTCATTGAGCCATTTATTGACC
AGCCAATTTCTGTAGTATTTATTCTTCCAGGCTCATCGCACTTTTGTGCCATGTGGCGCCTCGTA
CCACCGTTCCGATACAACCTCGACCATCGTTCCGCTACAACCTCGCCTATACGATCGGGCCATTG
TCACGTCGCCCCCACGCACTCAAGCGCTGCTTGTATTGTCAGTGT
Found at i:163268 original size:228 final size:228
Alignment explanation
Indices: 162848--163293 Score: 506
Period size: 228 Copynumber: 2.0 Consensus size: 228
162838 AACCGGCTGG
* * *
162848 ACAAACCCTGCTTCCCGCTGCTGGAACTCCTGCGGGTCCTGAACCGGTTGAAGGTATGCGTCGGC
1 ACAAACCCTGCTTCCCGCTCCTGGAACTCCTGCGGGTCCTGAACCGGTTGAAGGTACGCGTCAGC
* ** * * * *
162913 GATGGCAGACTCCTTCTGCTGGATCTCCTTGGGGTCTTTCACCGGTTGAACGAACCCTGCTTCTC
66 CACCGCAGACTCCTGCTGCTGCATCTCCTTGGGGTCTTTCACCGGGTGAACGAACCCTGCTTCCC
* * * * * * *
162978 TCTGCTGAAATTCCTGAGGGTCTTGGACCGGTTGCAAATAGGCGTCCGCAATGGCCGACTCCTTT
131 GCTGCTCAAACTCCTGAGGGTCCTGGACCGGTGGCAAATACGCGTCCGCAATGGCCGACTCCTTG
* * * *
163043 TGCTGGATTTCCTTCGGGTCCTTGACGGGCGCC
196 TCCCGGATCTCCTGCGGGTCCTTGACGGGCGCC
* *
163076 ACAAACCCTGCTTCCCGCTCCTGGAACTCCTTCGGGTCCTGGACCGGTTGCAA-GTACGCGTCAG
1 ACAAACCCTGCTTCCCGCTCCTGGAACTCCTGCGGGTCCTGAACCGGTTG-AAGGTACGCGTCAG
* * * *
163140 CCACCGCCGACTCCTGCTGCTGCATCTTCTTGGGGTCTTTGA-CGGGTGCTACGAACCCTGCTTC
65 CCACCGCAGACTCCTGCTGCTGCATCTCCTTGGGGTCTTTCACCGGGTG-AACGAACCCTGCTTC
* * * * * * *
163204 CCGCT-CTTCAACCTCTTTAGGGTCCTGGACTGG-GGCCAAGTACGCGTCGGCTAT-GCCGGACT
129 CCGCTGC-TCAAACTCCTGAGGGTCCTGGACCGGTGG-CAAATACGCGTCCGCAATGGCC-GACT
163266 CCTTGTCCCGGATCTCCTGCGGGTCCTT
191 CCTTGTCCCGGATCTCCTGCGGGTCCTT
163294 CACAGGCTCC
Statistics
Matches: 179, Mismatches: 34, Indels: 10
0.80 0.15 0.04
Matches are distributed among these distances:
227 10 0.06
228 167 0.93
229 2 0.01
ACGTcount: A:0.14, C:0.33, G:0.27, T:0.26
Consensus pattern (228 bp):
ACAAACCCTGCTTCCCGCTCCTGGAACTCCTGCGGGTCCTGAACCGGTTGAAGGTACGCGTCAGC
CACCGCAGACTCCTGCTGCTGCATCTCCTTGGGGTCTTTCACCGGGTGAACGAACCCTGCTTCCC
GCTGCTCAAACTCCTGAGGGTCCTGGACCGGTGGCAAATACGCGTCCGCAATGGCCGACTCCTTG
TCCCGGATCTCCTGCGGGTCCTTGACGGGCGCC
Left flanking sequence: Indices 162348 -- 162847
GTCAAGGACCTTGAGCCTTTGCTCATGGTCAACAAGACCTGGGCTGCTGTCATTGGCCACGCCGT
CTCCGCCAAGAACAGAGTCGAGATTGTCAACAAGGCCAAGACTCTCGGTGTCAAGGTTGTCAACG
CCAAGGGCAGAGTCAACTTGTCCGCTTAATCAACTGGTTGGGTTTTTCTGTACTTTAGGCACATC
AAATACACATAATGCGATAGAGCAAAAGTAGAGCGTAGGTGGTGATGAGGATACTTCCTATTTGA
AAATCATCAATCAACGATTAATCCATAGTTGTGGTCTACAACTGTCACAAGACTTTGGCCATCCT
CACGAAGAGGTAACCATTACAACGTGGTAGAATTCATAAACATTAATCTAGCTATCTCGTCTGAG
TGTAGGCGTCTTGGGCGTTCGCCTGGTTCGCCTGGTTTGCCGGCTGTAAGTAGGCATCGGCGATG
CCAGACTCCTTCTGGCGGATCTCTTCCGGGTCCCTAACCGGCTGG
Right flanking sequence: Indices 163294 -- 163793
CACAGGCTCCTCAAACTTGTCTACAAGCTTCTCGAGCTTGCCCTTGAGGCCCTTGTACTCCTTCT
TCTCTCCGGAGTGGGTGTGCTCACGTGACTCGGAGTTAGTGTCGAGCTGGGGGTCGTTGCCAGCG
GCGTAGGCGTTGGGCTGGGCAGCCACGGGGTCGGTCGCGGGCACAGTGCCCTCGGGAACGGTGTT
GGACATGGTGTTACCAAATAACCGGATCAATCGGTTGCTTGGGTCGCTTGCTCTCGGGATTGTGC
AGGACTAAGGCCGAGGACCGATGCCAGAGCATTGTTGAGGCGAGTCATTGAGCCATTTATTGACC
AGCCAATTTCTGTAGTATTTATTCTTCCAGGCTCATCGCACTTTTGTGCCATGTGGCGCCTCGTA
CCACCGTTCCGATACAACCTCGACCATCGTTCCGCTACAACCTCGCCTATACGATCGGGCCATTG
TCACGTCGCCCCCACGCACTCAAGCGCTGCTTGTATTGTCAGTGT
Found at i:163714 original size:23 final size:24
Alignment explanation
Indices: 163677--163728 Score: 79
Period size: 23 Copynumber: 2.2 Consensus size: 24
163667 CCATGTGGCG
163677 CCTCGTACCACCGTTCCGATACAA
1 CCTCGTACCACCGTTCCGATACAA
* *
163701 CCTCG-ACCATCGTTCCGCTACAA
1 CCTCGTACCACCGTTCCGATACAA
163724 CCTCG
1 CCTCG
163729 CCTATACGAT
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
23 21 0.81
24 5 0.19
ACGTcount: A:0.21, C:0.44, G:0.13, T:0.21
Consensus pattern (24 bp):
CCTCGTACCACCGTTCCGATACAA
Left flanking sequence: Indices 163177 -- 163676
TTTGACGGGTGCTACGAACCCTGCTTCCCGCTCTTCAACCTCTTTAGGGTCCTGGACTGGGGCCA
AGTACGCGTCGGCTATGCCGGACTCCTTGTCCCGGATCTCCTGCGGGTCCTTCACAGGCTCCTCA
AACTTGTCTACAAGCTTCTCGAGCTTGCCCTTGAGGCCCTTGTACTCCTTCTTCTCTCCGGAGTG
GGTGTGCTCACGTGACTCGGAGTTAGTGTCGAGCTGGGGGTCGTTGCCAGCGGCGTAGGCGTTGG
GCTGGGCAGCCACGGGGTCGGTCGCGGGCACAGTGCCCTCGGGAACGGTGTTGGACATGGTGTTA
CCAAATAACCGGATCAATCGGTTGCTTGGGTCGCTTGCTCTCGGGATTGTGCAGGACTAAGGCCG
AGGACCGATGCCAGAGCATTGTTGAGGCGAGTCATTGAGCCATTTATTGACCAGCCAATTTCTGT
AGTATTTATTCTTCCAGGCTCATCGCACTTTTGTGCCATGTGGCG
Right flanking sequence: Indices 163729 -- 164228
CCTATACGATCGGGCCATTGTCACGTCGCCCCCACGCACTCAAGCGCTGCTTGTATTGTCAGTGT
CTATTTAAACATGGTGGTGCTTCTTAATTTTATACCCCAAGTCGCACATCCCCTGGTTGTCCACC
ACATAGTCCTCGCACGGCTTCAACTGGTGGCGCGACGCATGCTCCTCGATCATGATCAAGTCGAC
GTCCAGCTTCTGGCGCGGAATGCTGTTGAATGAGCTCCGCTGCGGGAGCACCCGCGGCAGTGTCA
GCAGCATCAGCGCCAGCGACGGGATCCGCTTCGACTGGGTGAAGTCCGACGGCAGCTGGAGCGCC
TCCTGCTCGGACACCGGCGCCAACTCCGACGGCGGCAACGCCAGCGGCGTCAGCGGCTCCAGCAG
CTCGCTCTCGCCCACCGGGGTGACGATGCCCTCGGGCGCCTTGGCCGGCAGCTCGCGTGCAGACC
CGTCCACCTGGGGCGAGTCGATCGGTGTGGGCACGTTGCCCGGTA
Found at i:173319 original size:14 final size:14
Alignment explanation
Indices: 173302--173334 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
173292 GGTGGCGCGA
173302 GGGTGGTGGGTCC-T
1 GGGTGGTGGG-CCTT
173316 GGGTGGTGGGCCTT
1 GGGTGGTGGGCCTT
173330 GGGTG
1 GGGTG
173335 TGTTTTTTAG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 2 0.11
14 16 0.89
ACGTcount: A:0.00, C:0.12, G:0.61, T:0.27
Consensus pattern (14 bp):
GGGTGGTGGGCCTT
Left flanking sequence: Indices 172802 -- 173301
ACGCCATGAACCGCTGGTACACCGGAATAAGCTCCGCCAGCACGTACAACCGCCCGTTGTCTCCC
AACACCGGGTCCACCACCCACGGCACCGGACTGGGCAACGCCGTCATCTGGCGCAAAAGCACCTC
AAGCACCTCGGCAGAGGGAGTGTACCCCGTGACTATGAGATCGTACCCGGCAAAGTCCAAGATCT
TGTGCAACCCGTCGAGGATGTCGGCTACTTCCGCGGCCAGCGCGACCAGCCCGGCAAACTTCCCG
TGGCCCGGGTGGTTGGAGTAGTTGGTGGTGTTGATGGCGTCGGCGTCCCAGCCACAGTACTGGAG
GGGGAAGATCATCGCCTTGTTGCCCACGTACCCGTGGGTGACGTGGGACAGCACTGATAGAAGGC
TGGGCATGGTGGTTTTTGCAGCCGGACAAAATTTTATCTGGGGTACGGCGTCGACCGCGCGTGAG
TCAGACGTGCGGGGACCCTGCGGCCGGTGGTGCCTGGTGGCGCGA
Right flanking sequence: Indices 173335 -- 173834
TGTTTTTTAGGGCTCTACAGATCCGGTGTTTGGTGAATGTGTCACCTCATCGAGGAGGGGAAGAA
AAGATGCGATGGTGGTGGACAATGCGGTTGAAAAGGTGGAAGATTTAGGTACAGTAGTGTTTCAC
GGTTCATTGCTCGAGCTTTGTTTGTAGTCTTGTACCTGCTGTTTTCTTGTTTGTTTCTATCTTTT
TTTCGATTTCTTCTCTCGTTCTACCTGTCTTGGCTGACCTTTCCCAATGCGGCAGCAACGCTCCA
CGTCCGAACAGCGCATGCGGTGAAAAATAACACCGGTCACGAACGTAGCCCGTAGGGTGATCCGC
GTGATCCACCCCGATCTGCGGCCCACAATGGCCTGCAAGCCGCCCTAGAACCTTCGTTTCCCTCT
CCCCTGACTCTACCCCTTCTTCTGTCCGTCTACGCCTTGCACTGTTCCGTGCGAGTTGCCTCCAC
GTCAAACATAGCAGCCCACTACAGCACACCTACCACGCACCACCA
Found at i:175558 original size:33 final size:35
Alignment explanation
Indices: 175497--175564 Score: 104
Period size: 33 Copynumber: 2.0 Consensus size: 35
175487 ACAGCCTGTC
*
175497 GAGCAGCCTGTTGTCGAGCAGGTTAAGGAGCAGGTG
1 GAGCAGCCTGTTG-CGAGCAGGTGAAGGAGCAGGTG
175533 GAGCAGCCTG-TG-GAGCAGGTGAAGGAGCAGGT
1 GAGCAGCCTGTTGCGAGCAGGTGAAGGAGCAGGT
175565 TGTGGAGGCC
Statistics
Matches: 31, Mismatches: 1, Indels: 3
0.89 0.03 0.09
Matches are distributed among these distances:
33 19 0.61
35 2 0.06
36 10 0.32
ACGTcount: A:0.24, C:0.16, G:0.44, T:0.16
Consensus pattern (35 bp):
GAGCAGCCTGTTGCGAGCAGGTGAAGGAGCAGGTG
Left flanking sequence: Indices 174997 -- 175496
TGGTGAGCGCCGCCAACAAGGTGCACGTGTTCCTGCTTCCCGCCAAGTACTCGCGCGGCGGCGGG
CTGACCATCGGCACCATTTTCAACTACTTGTTCACGATTGTGTTGATGGCTGCGGTGGCCATTGG
CTTGCAGAGGGCGCACGAGACCGGCCAGTTGGAGGTGTGGATGGGCGAGGCGTCGCACTACGGCA
AGATCGGGGCTGCCCACGCGGTGGAGTACGGGGGGATTGCGGCGGAGATGGCGCGCAAGTACGGT
GACCAGGGGTACCTGATGGTGAGACTGAAGATCGACGACTACCAGTCGGCGCAGGCGGAGAAGAA
GGCGCTGGCAGCCGCGCTCGCGGACTTGACGGCGAAGCTGGACATCATGAGCGAGACCACGGCGG
ACCCGCAGACGGAGACGCAGTCGACGTACCACGAGGCGAACCGGGAGGGCTACCAGCCTGTGGAG
CAGGTGGTGGAACAGCCTGTAGAACAGAAACAGGAACAGCCTGTC
Right flanking sequence: Indices 175565 -- 176064
TGTGGAGGCCAAGGAACAGGTCCAGGACGCTGCCAGCCAGGGGTACAACCAGGCTCAGGAGGCAG
TGGACCACGCCCAGCAACAAGCACGCGAGATGGCTGGCCACGCTCAGGAACAGGCGGCCGAGGCT
GCCAGCCAGGTGTATGACCAGGCCCAGGACGTCGCTGGCCACGCACACGAACAGGTTGCAGAAGC
AGCTGGCCAGGCCCAGGACGCGGCAGAGCCCGTGGTCGAACAAATCAACGAGGCACAGCCGGCCG
AGCACGCGAAGGAGGCGATCGAGTCGGTGGTGGAGCAGGTGAAGCAGGCGGCCGAGCCCGTGGTG
GAGCAGGTGCAGCTGGCCGCGGAGCCCGTGGTGGAACAGGTGCAGAACGTGGTGGAGCCCGTGGT
GGAGCGGGCGCAGGAGGCGGCCGAGCCCGTGGTTGAGGCGGCGGCTCCTGTGGCGGAGCAGGTCC
AGGACGCGGCCCAGACGGTGGTCGAGCAGGCCACCGAGGCCGCTG
Found at i:175874 original size:33 final size:33
Alignment explanation
Indices: 175832--175987 Score: 107
Period size: 33 Copynumber: 4.7 Consensus size: 33
175822 CCGAGCACGC
* * * *
175832 GAAGGAGGCGATCGAGTCGGTGGTGGAGCAGGT
1 GAAGCAGGCGACCGAGCCCGTGGTGGAGCAGGT
*
175865 GAAGCAGGCGGCCGAGCCCGTGGTGGAGCAGGT
1 GAAGCAGGCGACCGAGCCCGTGGTGGAGCAGGT
* * * *
175898 GCAGCTGGCCG-CGGAGCCCGTGGTGGAACAGGT
1 GAAGCAGG-CGACCGAGCCCGTGGTGGAGCAGGT
* * * * *** * *
175931 GCAGAACGTGGTGGAGCCCGTGGTGGAGCGGGC
1 GAAGCAGGCGACCGAGCCCGTGGTGGAGCAGGT
* * *
175964 GCAGGAGGCGGCCGAGCCCGTGGT
1 GAAGCAGGCGACCGAGCCCGTGGT
175988 TGAGGCGGCG
Statistics
Matches: 99, Mismatches: 22, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
32 1 0.01
33 96 0.97
34 2 0.02
ACGTcount: A:0.17, C:0.22, G:0.49, T:0.12
Consensus pattern (33 bp):
GAAGCAGGCGACCGAGCCCGTGGTGGAGCAGGT
Left flanking sequence: Indices 175332 -- 175831
GCCGCGCTCGCGGACTTGACGGCGAAGCTGGACATCATGAGCGAGACCACGGCGGACCCGCAGAC
GGAGACGCAGTCGACGTACCACGAGGCGAACCGGGAGGGCTACCAGCCTGTGGAGCAGGTGGTGG
AACAGCCTGTAGAACAGAAACAGGAACAGCCTGTCGAGCAGCCTGTTGTCGAGCAGGTTAAGGAG
CAGGTGGAGCAGCCTGTGGAGCAGGTGAAGGAGCAGGTTGTGGAGGCCAAGGAACAGGTCCAGGA
CGCTGCCAGCCAGGGGTACAACCAGGCTCAGGAGGCAGTGGACCACGCCCAGCAACAAGCACGCG
AGATGGCTGGCCACGCTCAGGAACAGGCGGCCGAGGCTGCCAGCCAGGTGTATGACCAGGCCCAG
GACGTCGCTGGCCACGCACACGAACAGGTTGCAGAAGCAGCTGGCCAGGCCCAGGACGCGGCAGA
GCCCGTGGTCGAACAAATCAACGAGGCACAGCCGGCCGAGCACGC
Right flanking sequence: Indices 175988 -- 176487
TGAGGCGGCGGCTCCTGTGGCGGAGCAGGTCCAGGACGCGGCCCAGACGGTGGTCGAGCAGGCCA
CCGAGGCCGCTGGGTCGGTGGTGGAGCAAGCCCAGGAGGTGGTGGAGCCTGTGGTGGAGCAAGCA
CGCGAGGCTGCTGAGCCCGTGGTTGAGGCTGCTGAGTCTGTGGTTGAGGCTGCTGAGCCTGTGGT
TGAGCAGGCCTCCGAGTCCGTGCAGTCTGTGGCGGAAGCCGCGGCGGAGGCGGCTGCTGAGGCCA
CCGAGGCGGTGGTGGACGCGGCTGAGCCCGTGGTGGAGGCGGCCAAGCAGGCCCCCGAGCCCGTG
GAAGCCGCCCAGGAGGTCGTCGAGGAGGCTTCCCTGGTTGTTGTAGAGGCCACCGAGGCTGCCAC
CGAGGCTGCCGAGCCTGTCGCTGAGCAGGCGGCGGAAAAGGCCCAGGAGGTTGCCTCCGAGGCCC
CCATCGCTGAGATGTTGCACAAGGTCGAGTCCGCGGTGGCGGAGG
Found at i:175930 original size:66 final size:66
Alignment explanation
Indices: 175851--175987 Score: 157
Period size: 66 Copynumber: 2.1 Consensus size: 66
175841 GATCGAGTCG
* * * * * *
175851 GTGGTGGAGCAGGTGAAGCAGGCGGCCGAGCCCGTGGTGGAGCAGGTGCAGCTGGCCGCGGAGCC
1 GTGGTGGAACAGGTGAAGAACGCGGCCGAGCCCGTGGTGGAGCAGGCGCAGCAGGCCGCCGAGCC
175916 C
66 C
* * ** * * *
175917 GTGGTGGAACAGGTGCAGAACGTGGTGGAGCCCGTGGTGGAGCGGGCGCAGGAGGCGGCCGAGCC
1 GTGGTGGAACAGGTGAAGAACGCGGCCGAGCCCGTGGTGGAGCAGGCGCAGCAGGCCGCCGAGCC
175982 C
66 C
175983 GTGGT
1 GTGGT
175988 TGAGGCGGCG
Statistics
Matches: 58, Mismatches: 13, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
66 58 1.00
ACGTcount: A:0.15, C:0.23, G:0.50, T:0.12
Consensus pattern (66 bp):
GTGGTGGAACAGGTGAAGAACGCGGCCGAGCCCGTGGTGGAGCAGGCGCAGCAGGCCGCCGAGCC
C
Left flanking sequence: Indices 175351 -- 175850
CGGCGAAGCTGGACATCATGAGCGAGACCACGGCGGACCCGCAGACGGAGACGCAGTCGACGTAC
CACGAGGCGAACCGGGAGGGCTACCAGCCTGTGGAGCAGGTGGTGGAACAGCCTGTAGAACAGAA
ACAGGAACAGCCTGTCGAGCAGCCTGTTGTCGAGCAGGTTAAGGAGCAGGTGGAGCAGCCTGTGG
AGCAGGTGAAGGAGCAGGTTGTGGAGGCCAAGGAACAGGTCCAGGACGCTGCCAGCCAGGGGTAC
AACCAGGCTCAGGAGGCAGTGGACCACGCCCAGCAACAAGCACGCGAGATGGCTGGCCACGCTCA
GGAACAGGCGGCCGAGGCTGCCAGCCAGGTGTATGACCAGGCCCAGGACGTCGCTGGCCACGCAC
ACGAACAGGTTGCAGAAGCAGCTGGCCAGGCCCAGGACGCGGCAGAGCCCGTGGTCGAACAAATC
AACGAGGCACAGCCGGCCGAGCACGCGAAGGAGGCGATCGAGTCG
Right flanking sequence: Indices 175988 -- 176487
TGAGGCGGCGGCTCCTGTGGCGGAGCAGGTCCAGGACGCGGCCCAGACGGTGGTCGAGCAGGCCA
CCGAGGCCGCTGGGTCGGTGGTGGAGCAAGCCCAGGAGGTGGTGGAGCCTGTGGTGGAGCAAGCA
CGCGAGGCTGCTGAGCCCGTGGTTGAGGCTGCTGAGTCTGTGGTTGAGGCTGCTGAGCCTGTGGT
TGAGCAGGCCTCCGAGTCCGTGCAGTCTGTGGCGGAAGCCGCGGCGGAGGCGGCTGCTGAGGCCA
CCGAGGCGGTGGTGGACGCGGCTGAGCCCGTGGTGGAGGCGGCCAAGCAGGCCCCCGAGCCCGTG
GAAGCCGCCCAGGAGGTCGTCGAGGAGGCTTCCCTGGTTGTTGTAGAGGCCACCGAGGCTGCCAC
CGAGGCTGCCGAGCCTGTCGCTGAGCAGGCGGCGGAAAAGGCCCAGGAGGTTGCCTCCGAGGCCC
CCATCGCTGAGATGTTGCACAAGGTCGAGTCCGCGGTGGCGGAGG
Found at i:176134 original size:33 final size:33
Alignment explanation
Indices: 176070--176140 Score: 83
Period size: 33 Copynumber: 2.2 Consensus size: 33
176060 CGCTGGGTCG
* * *
176070 GTGGTGGAGCAAGCCCAGGAGGTGGTGGAGCCT
1 GTGGTGGAGCAAGCACAGGAGGTGCTGGAGCCC
176103 GTGGTGGAGCAAGCAC-GCGAGGCTGCT-GAGCCC
1 GTGGTGGAGCAAGCACAG-GAGG-TGCTGGAGCCC
176136 GTGGT
1 GTGGT
176141 TGAGGCTGCT
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
32 1 0.03
33 29 0.88
34 3 0.09
ACGTcount: A:0.17, C:0.21, G:0.46, T:0.15
Consensus pattern (33 bp):
GTGGTGGAGCAAGCACAGGAGGTGCTGGAGCCC
Left flanking sequence: Indices 175570 -- 176069
AGGCCAAGGAACAGGTCCAGGACGCTGCCAGCCAGGGGTACAACCAGGCTCAGGAGGCAGTGGAC
CACGCCCAGCAACAAGCACGCGAGATGGCTGGCCACGCTCAGGAACAGGCGGCCGAGGCTGCCAG
CCAGGTGTATGACCAGGCCCAGGACGTCGCTGGCCACGCACACGAACAGGTTGCAGAAGCAGCTG
GCCAGGCCCAGGACGCGGCAGAGCCCGTGGTCGAACAAATCAACGAGGCACAGCCGGCCGAGCAC
GCGAAGGAGGCGATCGAGTCGGTGGTGGAGCAGGTGAAGCAGGCGGCCGAGCCCGTGGTGGAGCA
GGTGCAGCTGGCCGCGGAGCCCGTGGTGGAACAGGTGCAGAACGTGGTGGAGCCCGTGGTGGAGC
GGGCGCAGGAGGCGGCCGAGCCCGTGGTTGAGGCGGCGGCTCCTGTGGCGGAGCAGGTCCAGGAC
GCGGCCCAGACGGTGGTCGAGCAGGCCACCGAGGCCGCTGGGTCG
Right flanking sequence: Indices 176141 -- 176640
TGAGGCTGCTGAGTCTGTGGTTGAGGCTGCTGAGCCTGTGGTTGAGCAGGCCTCCGAGTCCGTGC
AGTCTGTGGCGGAAGCCGCGGCGGAGGCGGCTGCTGAGGCCACCGAGGCGGTGGTGGACGCGGCT
GAGCCCGTGGTGGAGGCGGCCAAGCAGGCCCCCGAGCCCGTGGAAGCCGCCCAGGAGGTCGTCGA
GGAGGCTTCCCTGGTTGTTGTAGAGGCCACCGAGGCTGCCACCGAGGCTGCCGAGCCTGTCGCTG
AGCAGGCGGCGGAAAAGGCCCAGGAGGTTGCCTCCGAGGCCCCCATCGCTGAGATGTTGCACAAG
GTCGAGTCCGCGGTGGCGGAGGAGTTGGGCGACGCTGGCCCCGCGCTGGCGATCGAGCTGGTGGT
CGAGCAGGCGGCCGAGGCCATGGGCATTCACGAGGAGTCCCAGGAGCCTCTTGACACCCCTGCGG
CCGCGGGCGAGGTGCCTGTGCATCCCGAGGGCCAGGCTGTGCACA
Found at i:176145 original size:21 final size:21
Alignment explanation
Indices: 176121--176186 Score: 114
Period size: 21 Copynumber: 3.1 Consensus size: 21
176111 GCAAGCACGC
*
176121 GAGGCTGCTGAGCCCGTGGTT
1 GAGGCTGCTGAGCCTGTGGTT
*
176142 GAGGCTGCTGAGTCTGTGGTT
1 GAGGCTGCTGAGCCTGTGGTT
176163 GAGGCTGCTGAGCCTGTGGTT
1 GAGGCTGCTGAGCCTGTGGTT
176184 GAG
1 GAG
176187 CAGGCCTCCG
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 42 1.00
ACGTcount: A:0.11, C:0.18, G:0.44, T:0.27
Consensus pattern (21 bp):
GAGGCTGCTGAGCCTGTGGTT
Left flanking sequence: Indices 175621 -- 176120
AGGAGGCAGTGGACCACGCCCAGCAACAAGCACGCGAGATGGCTGGCCACGCTCAGGAACAGGCG
GCCGAGGCTGCCAGCCAGGTGTATGACCAGGCCCAGGACGTCGCTGGCCACGCACACGAACAGGT
TGCAGAAGCAGCTGGCCAGGCCCAGGACGCGGCAGAGCCCGTGGTCGAACAAATCAACGAGGCAC
AGCCGGCCGAGCACGCGAAGGAGGCGATCGAGTCGGTGGTGGAGCAGGTGAAGCAGGCGGCCGAG
CCCGTGGTGGAGCAGGTGCAGCTGGCCGCGGAGCCCGTGGTGGAACAGGTGCAGAACGTGGTGGA
GCCCGTGGTGGAGCGGGCGCAGGAGGCGGCCGAGCCCGTGGTTGAGGCGGCGGCTCCTGTGGCGG
AGCAGGTCCAGGACGCGGCCCAGACGGTGGTCGAGCAGGCCACCGAGGCCGCTGGGTCGGTGGTG
GAGCAAGCCCAGGAGGTGGTGGAGCCTGTGGTGGAGCAAGCACGC
Right flanking sequence: Indices 176187 -- 176686
CAGGCCTCCGAGTCCGTGCAGTCTGTGGCGGAAGCCGCGGCGGAGGCGGCTGCTGAGGCCACCGA
GGCGGTGGTGGACGCGGCTGAGCCCGTGGTGGAGGCGGCCAAGCAGGCCCCCGAGCCCGTGGAAG
CCGCCCAGGAGGTCGTCGAGGAGGCTTCCCTGGTTGTTGTAGAGGCCACCGAGGCTGCCACCGAG
GCTGCCGAGCCTGTCGCTGAGCAGGCGGCGGAAAAGGCCCAGGAGGTTGCCTCCGAGGCCCCCAT
CGCTGAGATGTTGCACAAGGTCGAGTCCGCGGTGGCGGAGGAGTTGGGCGACGCTGGCCCCGCGC
TGGCGATCGAGCTGGTGGTCGAGCAGGCGGCCGAGGCCATGGGCATTCACGAGGAGTCCCAGGAG
CCTCTTGACACCCCTGCGGCCGCGGGCGAGGTGCCTGTGCATCCCGAGGGCCAGGCTGTGCACAT
GGACGCTCCCCAGGGGGTTGACATGGGCGCTGCTGCTGCCATGGC
Found at i:176378 original size:12 final size:12
Alignment explanation
Indices: 176361--176387 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
176351 TGTTGTAGAG
176361 GCCACCGAGGCT
1 GCCACCGAGGCT
176373 GCCACCGAGGCT
1 GCCACCGAGGCT
176385 GCC
1 GCC
176388 GAGCCTGTCG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.15, C:0.44, G:0.33, T:0.07
Consensus pattern (12 bp):
GCCACCGAGGCT
Left flanking sequence: Indices 175861 -- 176360
AGGTGAAGCAGGCGGCCGAGCCCGTGGTGGAGCAGGTGCAGCTGGCCGCGGAGCCCGTGGTGGAA
CAGGTGCAGAACGTGGTGGAGCCCGTGGTGGAGCGGGCGCAGGAGGCGGCCGAGCCCGTGGTTGA
GGCGGCGGCTCCTGTGGCGGAGCAGGTCCAGGACGCGGCCCAGACGGTGGTCGAGCAGGCCACCG
AGGCCGCTGGGTCGGTGGTGGAGCAAGCCCAGGAGGTGGTGGAGCCTGTGGTGGAGCAAGCACGC
GAGGCTGCTGAGCCCGTGGTTGAGGCTGCTGAGTCTGTGGTTGAGGCTGCTGAGCCTGTGGTTGA
GCAGGCCTCCGAGTCCGTGCAGTCTGTGGCGGAAGCCGCGGCGGAGGCGGCTGCTGAGGCCACCG
AGGCGGTGGTGGACGCGGCTGAGCCCGTGGTGGAGGCGGCCAAGCAGGCCCCCGAGCCCGTGGAA
GCCGCCCAGGAGGTCGTCGAGGAGGCTTCCCTGGTTGTTGTAGAG
Right flanking sequence: Indices 176388 -- 176887
GAGCCTGTCGCTGAGCAGGCGGCGGAAAAGGCCCAGGAGGTTGCCTCCGAGGCCCCCATCGCTGA
GATGTTGCACAAGGTCGAGTCCGCGGTGGCGGAGGAGTTGGGCGACGCTGGCCCCGCGCTGGCGA
TCGAGCTGGTGGTCGAGCAGGCGGCCGAGGCCATGGGCATTCACGAGGAGTCCCAGGAGCCTCTT
GACACCCCTGCGGCCGCGGGCGAGGTGCCTGTGCATCCCGAGGGCCAGGCTGTGCACATGGACGC
TCCCCAGGGGGTTGACATGGGCGCTGCTGCTGCCATGGCCGCCATGGCCGCGCACGAGGTGGTGG
ACGAGGTCCAGGACGCCAAGCACACCGTGGCGGATGCCGCGGAGTCTGTGGTGGAGGCGGTGAGC
GAGGGGGTGGCTGGCGCCGCCCACCACGCCGAGCTGGCAGTGTCTGAGGTGGTGGACGCTGTCAA
GAGCCACGAGCACGCTCCCGAGGCGCACGACGCCCAGCCGGTCAC
Found at i:177389 original size:15 final size:15
Alignment explanation
Indices: 177355--177397 Score: 68
Period size: 15 Copynumber: 2.8 Consensus size: 15
177345 TTAAACTATC
177355 TCCCAACCTTCTTCTA
1 TCCCAACCTT-TTCTA
*
177371 TCCCAACCTTTTCTT
1 TCCCAACCTTTTCTA
177386 TCCCAACCTTTT
1 TCCCAACCTTTT
177398 TTCCATTCCT
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
15 16 0.62
16 10 0.38
ACGTcount: A:0.16, C:0.42, G:0.00, T:0.42
Consensus pattern (15 bp):
TCCCAACCTTTTCTA
Left flanking sequence: Indices 176855 -- 177354
CGCTCCCGAGGCGCACGACGCCCAGCCGGTCACTTCGATTGAATCTGAAGCGGCCCCGGTGGACG
CGCCCGTGAACCACGAGCAGGTGGTGGAGGAGGTTGTCGAGCCCGCGGTTGGCCACGACGAGTTG
TAGCCGCGTAATGTATAATAGAATAGAGCATAATGGTGGGCACGGCCCAAAGAGTAGAGCTACGG
ATTGGCTAATGGCGCGGCCCAGTGGTAGAATTACGGATTGGCTAATAAATTGTACGTTGTATTGT
GTGTTTTTGCAGCCATTCAGCCATGCAGCCAGAAGCGAACTGGAGTGGGATTGTGCTCGTAATCA
AGGCGTTCAGGCTATGACTGCTCCCACAACACCTTTCTCACTACGAAGTCTCTGGGGTTGTTGCG
TGATTGTTGCTGCCTTGGTTGCTATTGGTTGCAACATGAAAAATCTCGAAAACCACCGAAAACAC
CCAATTCACAGCGTACCAGTTTTAGACTATACTTCTTAAACTATC
Right flanking sequence: Indices 177398 -- 177897
TTCCATTCCTGATTCTTTCCCGTCTGTCTCGCCCACCACCATCTTTTCGTCTGTGCGGCTTATCT
CCACCACCAAACGCGTACCCATCGGACGCGTGCCTACCCAGAACCTGACCAGCAACCGCCCATGG
GAAACACGCCGATACACACCCGCAGCGACGTCACCGACCCGAGCGACTTTGCCGCCACAAAAGTC
CCCGAACTCGCCCAGATCGACGCGTTGGCCCGGTGCTACATCTGCAAGGAACACTACCGAGCGCC
GCTATTGACCGGGTGCAACCACACCTTCTGCTCGCAGTGCATCCGCGAGCTGTTGATGACTGAGG
AAAAGTGCCCCTTGTGCAAGCTGGAGCTCTTCGAGAGCAATTTGCGACGCGACATCATTCTCGAT
GAGATTGTGGGGGTGCTCAAGCAAGTGCGCCCGCGGTTGGTGAGCGAGCTCGCGGTAGAACCGGC
TCGTGCGGAGTCCACGGAGGAGCCAGGCCGCCAGCGGTCGCCCGA
Found at i:204042 original size:14 final size:14
Alignment explanation
Indices: 204025--204059 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
204015 CATGTCCGCT
204025 CCTCCGAGTCCTCC
1 CCTCCGAGTCCTCC
* *
204039 CCTCTGAGTCCTCT
1 CCTCCGAGTCCTCC
204053 CCTCCGA
1 CCTCCGA
204060 AGCATCCTTC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.09, C:0.51, G:0.14, T:0.26
Consensus pattern (14 bp):
CCTCCGAGTCCTCC
Left flanking sequence: Indices 203525 -- 204024
ACCCCGCCTCGGGCCGCTCGTACCACAAGTTGTTCAACCCCCCCAAGAAGGACATGACCGATGAC
ATCACCGGCGAGCCCCTCGTGCAGCGTTCCGACGACAACGAGGCTGCGTTGACCAAGCGGTTGAC
CACCTACCACAAGCAGACCGAGCCCATTGTCGAGTACTACCGCAAGTCGGGCATCTGGTCCGGGA
TTGACGCGTCCCAGAAGCCCACCAAGGTGTGGTCGGACATCCTCAAGTGCTTGGGCCAGCAGTAA
GTCGCGCTGTGCGTGGATATGTAGCTGACAATTGTACATATATTTATTATTGCCTATGATTATGG
GGTTGTACCGGTGTAATATATGCTCCGTAAGTGGCTAGCCCATCGTAGTTGCGTATTTCGTTTTG
TTGAGCTCGCCATCTTGTGCTCTCTCGAGCTCTCGTGTTTTCTCAAGAGGTTCTCGAAGTTCTCT
CAGAAGTTTTCTTGGCTTCTTCGAGCCCAATTCTTCATGTCCGCT
Right flanking sequence: Indices 204060 -- 204559
AGCATCCTTCTTTATGCTTTACTCCGCTTGGACGGGTGGTGGCCTGCGTCGTCCGCCCCACGCTT
GCGCGACTCGCGGTAGCAGGTGATGTGCATGATTCTGCGCGAGTCGTGCGGGTCGTTGGGCAGCC
GGATGGCGTCGGGCCAGATCCACTCGCCGGTGTCGTCGAGGTACTTGGCCTTGATCACCTCGCGA
CAGATAATGCACCGGTTCTCCATGTTCGTAGAATCCTCGGGCACCACCACGTACCCCGGTCCGGG
CGGCAACTCGTCCACCTCCATGGGCGCCGCGTCAGCAGCCGCCGGCTTGTCGGTGGCGTACTCGA
GAAGCACCTCGTCGCGGAACTCGACCCACTCGTAGTCGTCGATGAACCAATCTCGCAGCTGCACG
TTGAGCTGCTGAGCCTGCTTCGAGTTGATGCGGAAGTGCCAGTCCAAGTGCAACTGCTTGCGTCG
CTCGCCGTCGTCGTCGGTCTCAAACCGCTTGCCGCACTGGTTGCA
Found at i:234722 original size:9 final size:9
Alignment explanation
Indices: 234708--234734 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
234698 GACTTGGCGC
234708 AGGCCAAGG
1 AGGCCAAGG
234717 AGGCCAAGG
1 AGGCCAAGG
234726 AGGCCAAGG
1 AGGCCAAGG
234735 CAGCAGAGAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.33, C:0.22, G:0.44, T:0.00
Consensus pattern (9 bp):
AGGCCAAGG
Left flanking sequence: Indices 234208 -- 234707
TTTGCTGATTCTCGTCACCGACTCCGAGCTGCTGGTGAAGAACGCCGCTGACATTTTGGACCGGT
TGATCAAGGATATTGTCAGCGCCAAGGCCACCAACTACGTGCTGATCTTGCACCAGAACGAGCCC
GCCACCGACATCAAGCTGCACTTGGTCGACGCTGACGGCGTGGCCATCCAGATCAACCACCCCCA
GGACACCGAGAAGGCGTTCAGTCTCCCCAAGTTCATTCCGACGTTGCTTGAGCGGATGTACGTGT
TGGACCCGTACCTGAAGAAGTTCATGTTGCTGTGGCTCGAGTTGTTTGACGACATCCCGACCCTT
GAGTTGGTGCTGTTTTTGCCCAACTTTTTGGAGCCGCTCATCAAGTTCATGATGAACTCGGCCCC
GGCTGACGTGCGGATGGAGACCGAAAACGTGCTCAACATGTTCTTGCACGAGGTCCAGGCAATCT
CGCGGGCGAAATTGGACAAGCGGCGTAGGCACCGCGACTTGGCGC
Right flanking sequence: Indices 234735 -- 235234
CAGCAGAGAAAAAGTCCAAGGACGATGTGTCGTCACGCGACTCGGCAGATGACACCGCTGGCGAC
ACCCTGGTGGCGCTGATCGCGCTGACGCTGACCACGGTGATCCGTCCGCAGACCGAGGCCCTGGA
CGATGACGACGACGACACGTCGTTTGTGGCGGGACAGGACATCTACTTGGACTACGCGGCGATGA
TCGAGATCCTCTTGCCGTTCTTGCCGTTTGCCAATAGCAAGCGGACCGCGGTGGACACCCTGGGC
GAGCCCCACGAGATCACTGTGGTGATCCAGCAGACAGCGTTGACGTGGTTGCAGCTGATTCTCGC
CATCCTGCCGCTGGGGTTTGTCAACCTCCTACCCACATGCATTGAGATTGTCGTCAAGAACATTG
CGGCCACCGAGCACGACAAGGATTACGAGTTGCGCAACCAGTACCTCGAGCTCAACGAGGGGCTC
GAGCAGGTGGTGGTGCAGATGAAGGAGTGCTCGCCCGAGCTGCAA
Found at i:248979 original size:11 final size:11
Alignment explanation
Indices: 248963--248987 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
248953 TTCCCTGCTC
248963 AAAGACGTGGA
1 AAAGACGTGGA
248974 AAAGACGTGGA
1 AAAGACGTGGA
248985 AAA
1 AAA
248988 CACTGGGCGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.52, C:0.08, G:0.32, T:0.08
Consensus pattern (11 bp):
AAAGACGTGGA
Left flanking sequence: Indices 248463 -- 248962
GAGCTAGTTATGGACTCTGAAAAAAAGGGGCATTCCCCTATGTAATTATACGGCATGAAATGTGA
GAAAGATTATTGTAGGTTGGATGACAGAGTGTTAAAGTAGATACGAGAAAGGAAATCCCGTCTTT
GTCCATCAGGTGATCGTTATTGTTGTTACTTTATGTGGCGCTATTTTGACCTGCATACAGCCCCA
AGATCTAACCCCTGAAGTGTACCTCTGTCACCTGGCAATTCTCCTGAAACCAAACCTGACAGTTT
CAGGCATTGTTTACCTGTTCGTGGCCATCTCCTGCAAAAAGTAATACCCCAACACCCCACTTTTC
TCCCTATTGTTTGTAGTCCCACCTACGCGACGCGATCGAAAAATCTCCACGTATAGGTTGCAACC
AAAGCATGCGATTCCCCCAGTTATTGGTTGGGTCCCTTTTGGCTGGTGTCTTGGCACACGAAGAG
CCTGGTCCGCAACTGATTCCCAACCTTCTCCATGTTTCCCTGCTC
Right flanking sequence: Indices 248988 -- 249487
CACTGGGCGACGTCAGGTTCGACAACGGACGGCTCCTAGTGAAAAATGGTGCTATCTGGTCGAAA
CAAGCACTTACCGGCAGTGACAAAGAGTGGACGGCCGAGTTCATTTTCCGTTCGCTGGGTACGAG
CGCCGACTCGGCTAATGATTTGACTAATGGGTTGGCATTGTGGTTAACTACCGAAATGGAGTCGG
ACACTCTGAACTTCGGGGGTCCAGCTAAGTATGACGGGTTTCAGATCCTTCTTAATGCCGGCTCC
GACATCCGTGGCATTGCCGTCTACAACTCGGATGGCTTTTCGCAACTGGTGCCCCAGACTCGGTT
CCTGATCGGCGACTGCAAGTTCAACTATCTTGATCTGATGGTTCCGTTCACAATTCGGGTGCTGT
ACCTGGATGCGCAGAGTATTTTCAAGGTCCAGATCGACAACAATCTCTGTTTCCGGACCGATCAA
ATCCGGATCCCCCCCGGACAACAGTACAAGTTGGGTATGCTGGCC
Found at i:280054 original size:15 final size:16
Alignment explanation
Indices: 280034--280063 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
280024 CGTCGGACTC
280034 GTCGTCCACC-CCTCA
1 GTCGTCCACCACCTCA
280049 GTCGTCCACCACCTC
1 GTCGTCCACCACCTC
280064 CTCTTCGTCC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 10 0.71
16 4 0.29
ACGTcount: A:0.13, C:0.53, G:0.13, T:0.20
Consensus pattern (16 bp):
GTCGTCCACCACCTCA
Left flanking sequence: Indices 279534 -- 280033
AACCAGAAGCGTGACACTGGTTCCGATATCGGGGCTGACATTGCCAACGCGGTGATGGGCGCCAT
GTTCAAGCGTGACGACACGGCCGCTGGCGGCGATGGTGACGACACTGCTGAGGCTGCTGCCACCA
CTATTGCGTCTACCCTGACCGACCCCGCTATCATCGAGGCCACCGACTTGTTCTCGCTGCTTGTC
GGCACTGCTCCCGCTCCCTCTGCGGCCGAGCCCTCCTCTCTGGCTGGCGGCAACGTGTTGGACGA
CTTGTTCGGCGACGTTGTTGGGCCCAACCCTACCACCTCGGGCACCAACGGCTCTGCCGAGGCCA
CTGCCTCCACCGGCTCCGGTTCGCTCTTGGATGACTTGTTCGGTGACTTGTTTGACTCGTCTCCC
TCCAACTCCACCCTGACCCCTAAGGACACCACCGACTCCTCCTCGGACTCTGGCTCCGACAACTT
CTTTGGTGACCTTTTGGACCTGATCTTTGGCACCTCGTCGGACTC
Right flanking sequence: Indices 280064 -- 280563
CTCTTCGTCCGGCGGTTCGCTTATTGACGAGATTATTGGTCTTGTCGGTGACGTTCTCTCCTCGC
TCTTTGCTCACTCTGGTGACTGGATCTCCGAGTTGTTGGAGGACTTGTTCGGTGGCTCTTCCCTG
GGCACCCTGGCCTCTGGCGACTTTTCTTTCGGTTCGTTGATTGGCGGTATCTTTGAGCTGATCAT
CGACTCGTTGTTCGGTGGCCTGCTGCTGTCGGGTACTTCGCTGACCACTGCCAACTCTGTGTTCG
GCTCTAACGCCAAGAAGTGCTGCTGCTCGCCCAAGTTCAAGGCCAAGCGCAACCAGCAGAAGCGG
ATGCTCAAGAAGATTGTCCAGGCCAAGGTTTCTCACAACATGGCCAAGCGCGACGTCTTGGTGGC
GAAGCGTGACACCTTGGCGCGCCGCATGGTGGCTGACGCCTTGATGAAGAGAATGGCGGAGTTGT
AATAGACCTAATATCCATAGCATTTTGTACAATAATACAGTTAGA
Found at i:282675 original size:6 final size:6
Alignment explanation
Indices: 282664--282702 Score: 57
Period size: 6 Copynumber: 7.0 Consensus size: 6
282654 GTCCAACCTG
282664 AGCTCC AGCTCC AGCT-C --CTCC AGCTCC AGCTCC AGCTCC
1 AGCTCC AGCTCC AGCTCC AGCTCC AGCTCC AGCTCC AGCTCC
282703 TCCAGCGTGG
Statistics
Matches: 30, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
3 2 0.07
4 1 0.03
5 1 0.03
6 26 0.87
ACGTcount: A:0.15, C:0.51, G:0.15, T:0.18
Consensus pattern (6 bp):
AGCTCC
Left flanking sequence: Indices 282164 -- 282663
GGCACTTGCTAAACAATATTCACTTCCACCCGAACTTGTTTGCCCTTTTAGGAAGGTATCTCCAC
CCAGCGCTCACAACGTTACCCAATACGGTTCGAGTTTTTCTACCCAGTATGGGTAAAAGACATAA
GCCGTTATATATAGATGTAGGCGGTCCCCGGGGCCCAAAAAAACTTAGCTTCGTCCCCTTACCTT
ATTCCGTCTAGTGCTGGTGTTCTCCGCTCGCTATGAGACTCAACAGCTTGACCTTGGTGACGATG
GCAGCCGTGGTGGCTGCCTCCGAGAAACGAGGGTTCCTTGACTCGCTTTTTGGCTCCTCGTCCGG
CGACCTGGCTCCGGCTGCTGCCCCCCAAGCTGCGGCGGTCGAGCCTGCGGCTGCCCCGGCGGCCG
CTCCCGCTGACGCCGCTGCCCCCGTCGACGCTGCTGCTGCTGCCGACCCGGTGGCCGTGGCTGCT
TCGAGCCTGTTGCTGCTGCTGCTGCTGCTGCTCTTGTCCAACCTG
Right flanking sequence: Indices 282703 -- 283202
TCCAGCGTGGTGCTCACCCTGATTCCCGCGTTGACCCTGCTGAAGCCCGCTCGTTCTACCGTGGC
TCCTGCCCTCTTTGGTGCTTCGTCTGACGAGCTCCCTCAAGATGCGGCTTTCGCTGCTGAGGATG
TTTCCTCCACTGCTGCTGCGTCCTCCGCGGCCGCTTCGTCTGCGCTTGAGTCCAGTGCGGCTGCT
TCTTCTGAGGCTGCTTCGTCGGCTGAGCCCTCTGCCACTGAGGCCTCCTCCACTAAGGGCTTCTT
GGAGGGGTTGTTTGCGGCGGACGAAACCGACACTGCTGCATCTTCGGGTGCCTCCTCCCTGGCGG
CTGCGTCGTCGCTGGCGGCCTCGTCTGCTGCTTCGTCGGCTGCTTCTTCCGCTACCTCGCTGGGT
GTCTCTTCTTCTGAGGCCTCCTCCGAGCTGGCCTCTGCCTCCTCCTCCGCCGCTGAGTCCTCTGC
TTCCGACGAGGACGAGTACTGCGATGAGGAGTCGGGCTCCGAAGA
Found at i:282688 original size:21 final size:21
Alignment explanation
Indices: 282664--282708 Score: 90
Period size: 21 Copynumber: 2.1 Consensus size: 21
282654 GTCCAACCTG
282664 AGCTCCAGCTCCAGCTCCTCC
1 AGCTCCAGCTCCAGCTCCTCC
282685 AGCTCCAGCTCCAGCTCCTCC
1 AGCTCCAGCTCCAGCTCCTCC
282706 AGC
1 AGC
282709 GTGGTGCTCA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.16, C:0.51, G:0.16, T:0.18
Consensus pattern (21 bp):
AGCTCCAGCTCCAGCTCCTCC
Left flanking sequence: Indices 282164 -- 282663
GGCACTTGCTAAACAATATTCACTTCCACCCGAACTTGTTTGCCCTTTTAGGAAGGTATCTCCAC
CCAGCGCTCACAACGTTACCCAATACGGTTCGAGTTTTTCTACCCAGTATGGGTAAAAGACATAA
GCCGTTATATATAGATGTAGGCGGTCCCCGGGGCCCAAAAAAACTTAGCTTCGTCCCCTTACCTT
ATTCCGTCTAGTGCTGGTGTTCTCCGCTCGCTATGAGACTCAACAGCTTGACCTTGGTGACGATG
GCAGCCGTGGTGGCTGCCTCCGAGAAACGAGGGTTCCTTGACTCGCTTTTTGGCTCCTCGTCCGG
CGACCTGGCTCCGGCTGCTGCCCCCCAAGCTGCGGCGGTCGAGCCTGCGGCTGCCCCGGCGGCCG
CTCCCGCTGACGCCGCTGCCCCCGTCGACGCTGCTGCTGCTGCCGACCCGGTGGCCGTGGCTGCT
TCGAGCCTGTTGCTGCTGCTGCTGCTGCTGCTCTTGTCCAACCTG
Right flanking sequence: Indices 282709 -- 283208
GTGGTGCTCACCCTGATTCCCGCGTTGACCCTGCTGAAGCCCGCTCGTTCTACCGTGGCTCCTGC
CCTCTTTGGTGCTTCGTCTGACGAGCTCCCTCAAGATGCGGCTTTCGCTGCTGAGGATGTTTCCT
CCACTGCTGCTGCGTCCTCCGCGGCCGCTTCGTCTGCGCTTGAGTCCAGTGCGGCTGCTTCTTCT
GAGGCTGCTTCGTCGGCTGAGCCCTCTGCCACTGAGGCCTCCTCCACTAAGGGCTTCTTGGAGGG
GTTGTTTGCGGCGGACGAAACCGACACTGCTGCATCTTCGGGTGCCTCCTCCCTGGCGGCTGCGT
CGTCGCTGGCGGCCTCGTCTGCTGCTTCGTCGGCTGCTTCTTCCGCTACCTCGCTGGGTGTCTCT
TCTTCTGAGGCCTCCTCCGAGCTGGCCTCTGCCTCCTCCTCCGCCGCTGAGTCCTCTGCTTCCGA
CGAGGACGAGTACTGCGATGAGGAGTCGGGCTCCGAAGAGCCTTC
Found at i:282708 original size:15 final size:15
Alignment explanation
Indices: 282666--282696 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
282656 CCAACCTGAG
282666 CTCCAGCTCCAGCTC
1 CTCCAGCTCCAGCTC
282681 CTCCAGCTCCAGCTC
1 CTCCAGCTCCAGCTC
282696 C
1 C
282697 AGCTCCTCCA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.13, C:0.55, G:0.13, T:0.19
Consensus pattern (15 bp):
CTCCAGCTCCAGCTC
Left flanking sequence: Indices 282166 -- 282665
CACTTGCTAAACAATATTCACTTCCACCCGAACTTGTTTGCCCTTTTAGGAAGGTATCTCCACCC
AGCGCTCACAACGTTACCCAATACGGTTCGAGTTTTTCTACCCAGTATGGGTAAAAGACATAAGC
CGTTATATATAGATGTAGGCGGTCCCCGGGGCCCAAAAAAACTTAGCTTCGTCCCCTTACCTTAT
TCCGTCTAGTGCTGGTGTTCTCCGCTCGCTATGAGACTCAACAGCTTGACCTTGGTGACGATGGC
AGCCGTGGTGGCTGCCTCCGAGAAACGAGGGTTCCTTGACTCGCTTTTTGGCTCCTCGTCCGGCG
ACCTGGCTCCGGCTGCTGCCCCCCAAGCTGCGGCGGTCGAGCCTGCGGCTGCCCCGGCGGCCGCT
CCCGCTGACGCCGCTGCCCCCGTCGACGCTGCTGCTGCTGCCGACCCGGTGGCCGTGGCTGCTTC
GAGCCTGTTGCTGCTGCTGCTGCTGCTGCTCTTGTCCAACCTGAG
Right flanking sequence: Indices 282697 -- 283196
AGCTCCTCCAGCGTGGTGCTCACCCTGATTCCCGCGTTGACCCTGCTGAAGCCCGCTCGTTCTAC
CGTGGCTCCTGCCCTCTTTGGTGCTTCGTCTGACGAGCTCCCTCAAGATGCGGCTTTCGCTGCTG
AGGATGTTTCCTCCACTGCTGCTGCGTCCTCCGCGGCCGCTTCGTCTGCGCTTGAGTCCAGTGCG
GCTGCTTCTTCTGAGGCTGCTTCGTCGGCTGAGCCCTCTGCCACTGAGGCCTCCTCCACTAAGGG
CTTCTTGGAGGGGTTGTTTGCGGCGGACGAAACCGACACTGCTGCATCTTCGGGTGCCTCCTCCC
TGGCGGCTGCGTCGTCGCTGGCGGCCTCGTCTGCTGCTTCGTCGGCTGCTTCTTCCGCTACCTCG
CTGGGTGTCTCTTCTTCTGAGGCCTCCTCCGAGCTGGCCTCTGCCTCCTCCTCCGCCGCTGAGTC
CTCTGCTTCCGACGAGGACGAGTACTGCGATGAGGAGTCGGGCTC
Done.