Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: scaffold71
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 122450
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.22
File 1 of 2
Found at i:13966 original size:19 final size:19
Alignment explanation
Indices: 13931--13969 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
13921 TGCATCTCTC
*
13931 CTTTCAGTCTTCCTTCCTT
1 CTTTCAGTCCTCCTTCCTT
13950 CTTTC-GTCCTCCTTTCCTT
1 CTTTCAGTCCTCC-TTCCTT
13969 C
1 C
13970 CCCTTTCCTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 6 0.33
19 12 0.67
ACGTcount: A:0.03, C:0.41, G:0.05, T:0.51
Consensus pattern (19 bp):
CTTTCAGTCCTCCTTCCTT
Left flanking sequence: Indices 13431 -- 13930
GTTTTGCCGTTGGACGACACAATGAGGATGTCGCGCCCGAAGGGGCCAAGCGTCGGTTTGAGGGT
ATCCTGGATGGCCATACACGCGCTGATGTTGTTGATGATCTGCCCACGCCCCTGCGATGCGTCGG
TGCCTTCTTTAAGCACGACAATCGTCGGCGTTTGTTGGAAGGACATGGCTAGGGAGAATGATCGC
TGGAAAATTATTGATGGTGTGTGCACTCCGAAAAACGCCACGCATCGGAGGGGAGAGGAAGGTAG
TGGTGGGGTGGGGTGTGAGGTAGGTGTGAGGGTAGGTTTTCATGGTGTCTAGGTGATTTTCATTG
TTTGGGGTGTGTTATGTTGTTTAGTTAATTTGGGTAGACGATACTCCTGCTCGTAACTACTGCTC
GTATAGTTTCACTACACCAGGTCTCTACATTGCCACTACGATTCTGGAATATCAGAACTTAGCAG
CCATCTCTCCTCTTGCGACCAAATGCCAGTACCAGTGCATCTCTC
Right flanking sequence: Indices 13970 -- 14469
CCCTTTCCTTCTCTTCTCTCCTTCTCCTTCAATTACCACCCACTCCACCTTTTTCGTGTGCGAAA
TTTTTCACCTTGATCAGGCATCATGTTCTCTGGCATCCACACCACAGCGCGTGCTACCCCGAGGC
TTGCCCGGGGTATTGCCATGAAGGGCGAGATCAAGTTGTCCAACCGCCGTGTCATGCGCAAGATC
GAGATGGGCCGCGCCCGGCCCACCACCTACTACCAGTTCGACACCCTCGTGGAGTTGTCGGACGG
GCTGGTGATCAAGAGACGGTCGCAGGCGCCCAAGGACGAGATCCGCATGATCAGTGACCAGCGCA
ACTCCAACCTCTGGAACCCCAACCGCCTGGACCTCGTCACCAGCGACCCCAACGCCACGGGCAAG
GTGTCGAAGTTCCAGCAAAAGTACGCCCAGTTCGGGGTGGAGACCCCGGCGAACAACACGGGCAA
GAAGCCCGCGAAGGAGGAGCGCATTGCCGACGACTTTGTCGAGCT
Found at i:16403 original size:23 final size:23
Alignment explanation
Indices: 16362--16455 Score: 143
Period size: 23 Copynumber: 4.0 Consensus size: 23
16352 CATTTGCGAT
* *
16362 TAGAGGCCATCCTCAATCCCAGTC
1 TAGAGTCCAT-CTCAAACCCAGTC
*
16386 TAGAGTCCATCTCAATCCCAGTC
1 TAGAGTCCATCTCAAACCCAGTC
*
16409 TAGAGTCCATTTCAAACCCAGTC
1 TAGAGTCCATCTCAAACCCAGTC
16432 TAGAGTCCATCTCAAACCCAGTC
1 TAGAGTCCATCTCAAACCCAGTC
16455 T
1 T
16456 CTACAATTAT
Statistics
Matches: 66, Mismatches: 4, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
23 57 0.86
24 9 0.14
ACGTcount: A:0.28, C:0.34, G:0.14, T:0.24
Consensus pattern (23 bp):
TAGAGTCCATCTCAAACCCAGTC
Left flanking sequence: Indices 15862 -- 16361
AGGGAGCCGGTGGTGTCGGCGAAGAAAGTCCACCGCGAGCGGACTCTGGCCACGAACCACAAGAT
CGTGGATGCTGGAAATGACAAGCTGGCGCATGCTGGGGTGGGTGAACTTCGCGCCCATCAACGCC
CGAGTCACCCGGTGGCCCTTGGTGGAGCCCGAGTCTGCCTCCGCGAGCTCGGCCACGAGATTGGT
GTCGGGGTGTTGGTGGTAGAGGGCTGAGATGTGGGCACAGTCGCCTGCAAGACGGCCCGGGACCC
TGAGCCGCGAGCCTAGCCTGGATAGTAGCCGCGGGGTGTGCGTGGCTCCGCTCATTGGTGCCTGG
ATGGGTTGTGGAGGTGTTGATCAGTATGCGATGCGACCCGGGCTGCGAACGCAGGTTGGAAATTC
AGGGTGGAACATGGACCAACAGTCACACGAGCAGTCCATATCGAAGCACTGTCTGTGGCTAAACC
ACGAAAACGCTTGGTTTATCAGTCTACATCTCTTACATTTGCGAT
Right flanking sequence: Indices 16456 -- 16955
CTACAATTATCAATGCAAGGGCAGATGCCCGGTGTCACATAACTACACAGTCGCCCATGCCAAAC
CCGTACATCACCTTCTCCACGTGGCGCCGGATCACCGGCCAGTCCTTGCGGCGCTGGACAAACTC
AAAGATCTCTTCCTGGCTGAAAATCCCATTGAACTTACTGAGATCCAGCACCAACTTGCCAATCG
CCTTGGAGTCGGTTCCCGAAATGAGGTAGATGTTGCCCACCTTTTTGAGCAGCTGGAAAAGCGGC
ATCACCAACCGCTTGTTGGTGCGGATGTGCTGGTTGATGAACTCGCAGTACGCGTTCAAGTCACT
GATGAGGTTGGTGGCCCCCGTCACCAGCACCGTCGACTTTTTGAGCATCTTGACGATGATCTGGA
AGAACCGCTCGGCGATCTCCTGCTGGAACACGTCGACAATCAGCCGGTCGGCCAGGTCGGTCAAG
AGGTCCATGTTCTCCTCCAAAATCGCAAGCGCCGACCGCCCGGCG
Found at i:23146 original size:19 final size:21
Alignment explanation
Indices: 23122--23168 Score: 80
Period size: 19 Copynumber: 2.3 Consensus size: 21
23112 GTGGCGGGTG
23122 AAATGAGTGG-AGTGAAGGT-
1 AAATGAGTGGCAGTGAAGGTA
23141 AAATGAGTGGCAGTGAAGGTA
1 AAATGAGTGGCAGTGAAGGTA
23162 AAATGAG
1 AAATGAG
23169 GGTGGATCCG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
19 10 0.38
20 9 0.35
21 7 0.27
ACGTcount: A:0.40, C:0.02, G:0.38, T:0.19
Consensus pattern (21 bp):
AAATGAGTGGCAGTGAAGGTA
Left flanking sequence: Indices 22622 -- 23121
AGTGAACCGTTCCAGCCGGATTGCCTCGAGTACCTTGCCATAGTCGACGGATCCCATGTTGATCA
CGGCTATTTTTATTCGGGCTCGAAAAATGTTTACGTGGAAGGCGCGCAACGCGCGTACGGTGATG
GTGGGCGGGATGTGGGTCTGTGTGGGGGTGGTGTGGGCTGGGAAGGGGCTGGTGGTGGTTGCGGG
GGGGTTGGGGTGGCGGTGGTGTGGTTCTCTTTTTTCAATGGCTTTGTGGGGGTGAGAGATGGGGG
TGGTTACGGTGCATTACTAAGTGCATGGACCCTGAGTAGCGAGCGAGAGCAAGTAGCGTGTGGGC
AGGGTTTTTGGTGGTAGGAGGGTGGTGAAGAGCGGGCTACGGGCGGTGGGTGCTGGCTGGGCGGT
GGCGATCTGCGAGTGTGGGGTATTGTAGGAGATCGGGAGGGGTGAAAGTGAATTACACCGCGAGC
GTCTGACAATATACGCATGGAATGACATATTTTGAGTGGCGGGTG
Right flanking sequence: Indices 23169 -- 23668
GGTGGATCCGAAGGCAGCGGAGTACCGGGTGGGCCGAGGACACAAAGACACTGGTCGTTTTCGTA
AACCGTGCACACGAGGGTAAGAAGCATGGAATACGGTGACAGCGGGACAACAGTATTGGTGAAAA
GAACAGAACACAGTGACAAGAAAGGAACATAGTGGCGAGAACAGTAACATGGTAACAAGACCTTG
GTGACAATAAAATACAGATGGGAACATTACGATGGGAACACGGTGATGGGAACACGAGGACACCA
CGCTAACGGGACCACGCTAAAAAAATACCCTTGTATACTGGCTAAATCGCGGAGTACCCGGGATT
ATCACCGTGGCAAGAGGAATTGACTCGTTAAGATGCTGGGGGGCCGCAGGCGGCGCCCCCCAGAC
CCCCCAACGCTTTTTTAGCTGTTTTTGGTGATTTAGTTGTGTTTTCGTGGTTTATTGGCGTCTGA
TACGTTATCCCTGGTTCAGATAAGAAGAGAGACTATAATCTGGAA
Found at i:23319 original size:19 final size:19
Alignment explanation
Indices: 23292--23347 Score: 51
Period size: 19 Copynumber: 2.9 Consensus size: 19
23282 AACAGTATTG
*
23292 GTGAAAAGAACAGAACACA
1 GTGACAAGAACAGAACACA
*
23311 GTGACAAGAA-AGGAACATA
1 GTGACAAGAACA-GAACACA
* *
23330 GTGGCGAGAACAGTAACA
1 GTGACAAGAACAG-AACA
23348 TGGTAACAAG
Statistics
Matches: 30, Mismatches: 4, Indels: 5
0.77 0.10 0.13
Matches are distributed among these distances:
18 1 0.03
19 24 0.80
20 5 0.17
ACGTcount: A:0.50, C:0.14, G:0.27, T:0.09
Consensus pattern (19 bp):
GTGACAAGAACAGAACACA
Left flanking sequence: Indices 22792 -- 23291
GGAAGGGGCTGGTGGTGGTTGCGGGGGGGTTGGGGTGGCGGTGGTGTGGTTCTCTTTTTTCAATG
GCTTTGTGGGGGTGAGAGATGGGGGTGGTTACGGTGCATTACTAAGTGCATGGACCCTGAGTAGC
GAGCGAGAGCAAGTAGCGTGTGGGCAGGGTTTTTGGTGGTAGGAGGGTGGTGAAGAGCGGGCTAC
GGGCGGTGGGTGCTGGCTGGGCGGTGGCGATCTGCGAGTGTGGGGTATTGTAGGAGATCGGGAGG
GGTGAAAGTGAATTACACCGCGAGCGTCTGACAATATACGCATGGAATGACATATTTTGAGTGGC
GGGTGAAATGAGTGGAGTGAAGGTAAATGAGTGGCAGTGAAGGTAAAATGAGGGTGGATCCGAAG
GCAGCGGAGTACCGGGTGGGCCGAGGACACAAAGACACTGGTCGTTTTCGTAAACCGTGCACACG
AGGGTAAGAAGCATGGAATACGGTGACAGCGGGACAACAGTATTG
Right flanking sequence: Indices 23348 -- 23847
TGGTAACAAGACCTTGGTGACAATAAAATACAGATGGGAACATTACGATGGGAACACGGTGATGG
GAACACGAGGACACCACGCTAACGGGACCACGCTAAAAAAATACCCTTGTATACTGGCTAAATCG
CGGAGTACCCGGGATTATCACCGTGGCAAGAGGAATTGACTCGTTAAGATGCTGGGGGGCCGCAG
GCGGCGCCCCCCAGACCCCCCAACGCTTTTTTAGCTGTTTTTGGTGATTTAGTTGTGTTTTCGTG
GTTTATTGGCGTCTGATACGTTATCCCTGGTTCAGATAAGAAGAGAGACTATAATCTGGAATGAA
ACTGGTGGAACGGATGGCTAACAGGAACACGCTAACAGAAACAAATAGGGCCACGCTATTAGGAA
CGCTAATAGGAACGCAAATAGGAACGCTAACAGGGATGCTAACAGGAACCACACTAACAGTACAC
ACTCACGGTAGTAACTATTTTCTACAATTCTATTCCAACGTTTGA
Found at i:23742 original size:12 final size:12
Alignment explanation
Indices: 23725--23786 Score: 70
Period size: 12 Copynumber: 5.2 Consensus size: 12
23715 AAATAGGGCC
*
23725 ACGCTATTAGGA
1 ACGCTAATAGGA
23737 ACGCTAATAGGA
1 ACGCTAATAGGA
*
23749 ACGCAAATAGGA
1 ACGCTAATAGGA
* *
23761 ACGCTAACAGGG
1 ACGCTAATAGGA
* *
23773 ATGCTAACAGGA
1 ACGCTAATAGGA
23785 AC
1 AC
23787 CACACTAACA
Statistics
Matches: 42, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
12 42 1.00
ACGTcount: A:0.40, C:0.19, G:0.26, T:0.15
Consensus pattern (12 bp):
ACGCTAATAGGA
Left flanking sequence: Indices 23225 -- 23724
GTTTTCGTAAACCGTGCACACGAGGGTAAGAAGCATGGAATACGGTGACAGCGGGACAACAGTAT
TGGTGAAAAGAACAGAACACAGTGACAAGAAAGGAACATAGTGGCGAGAACAGTAACATGGTAAC
AAGACCTTGGTGACAATAAAATACAGATGGGAACATTACGATGGGAACACGGTGATGGGAACACG
AGGACACCACGCTAACGGGACCACGCTAAAAAAATACCCTTGTATACTGGCTAAATCGCGGAGTA
CCCGGGATTATCACCGTGGCAAGAGGAATTGACTCGTTAAGATGCTGGGGGGCCGCAGGCGGCGC
CCCCCAGACCCCCCAACGCTTTTTTAGCTGTTTTTGGTGATTTAGTTGTGTTTTCGTGGTTTATT
GGCGTCTGATACGTTATCCCTGGTTCAGATAAGAAGAGAGACTATAATCTGGAATGAAACTGGTG
GAACGGATGGCTAACAGGAACACGCTAACAGAAACAAATAGGGCC
Right flanking sequence: Indices 23787 -- 24286
CACACTAACAGTACACACTCACGGTAGTAACTATTTTCTACAATTCTATTCCAACGTTTGACAGT
AGATAAACCATCCTCAGCATCCCTTCCATTCTAATTATGTATTAATGTGATCAAAACAACTGTTC
TATCCGCACCTATTCCTTCTTTTTGAACGCAGGAATCTCAAACCGCTCGTCAAACTTCTGCCCAG
GCAAGAACGGCGCCATCGTGAGCACGTCGTTCTCGAGCTGCTCCGGGCTCTCCGAGAGCCGCATC
GGTTTGTAGATGATGTATTCCAAGTCCTGCACCTCGGGCTCGTTGTCGTGCACCGGGCGGAAGAA
CTTGGGGTACCACTCGACGCCGTCCTCGATGCGTTTCTTGGCCTTTTCTCGCTGGTCGTTCTCCA
CCTTGTACTTTTCGGCGGTGGCTGTGTCGTGGTCGCGGTGGCTCAACGCGTCGATGGTGGGCTTC
CAGAGCCGTCTCGATTCGTAGTCCCACTGCTCCTCCACCGGACGC
Found at i:26051 original size:12 final size:12
Alignment explanation
Indices: 26034--26074 Score: 52
Period size: 12 Copynumber: 3.7 Consensus size: 12
26024 GAGAGGTGAA
26034 GAGGTGGTGGTG
1 GAGGTGGTGGTG
*
26046 GA---GGTGGTA
1 GAGGTGGTGGTG
26055 GAGGTGGTGGTG
1 GAGGTGGTGGTG
26067 GAGGTGGT
1 GAGGTGGT
26075 AGAGGTGGTA
Statistics
Matches: 24, Mismatches: 2, Indels: 6
0.75 0.06 0.19
Matches are distributed among these distances:
9 8 0.33
12 16 0.67
ACGTcount: A:0.12, C:0.00, G:0.63, T:0.24
Consensus pattern (12 bp):
GAGGTGGTGGTG
Left flanking sequence: Indices 25534 -- 26033
GGTGCGCTGGTGCAATTGCCAGGTGCAGCTGCGGACGCGCCAAGAAACGCGTCGGGAGGTGGTTG
TGGGATGCCGGGCCGCCGTGGCGGTGTTTGGCACCGGGATCCGGTGATTTGCCAAGCCTGGCAAC
CGCCAGGGCCCCACACGGTAGATGAGTTATCGGTTTTATCATGCATATGTACCTAATGGGGAGAG
CAGGGGTGCAACCTATTGTGGTAATTGCGAGGGCTTATGCGCGGCTCGGTTGAGGGTGGGTGCTG
CTGGGCTTCGCGGTGGTGGCAGGGCAGCTGGACCCGGCGCGGTGGTTGTTGGGTGTGGTGGGGGA
GCGGGTCGCGTGACGGGCGTTGGCATTCATGTGGGAAAGTCCGTTGACCCCACATTTTTAAGGGG
CGAGGGTCTGGGGACGATTGTTCGGACGGACGCGGAAGTGGCAGGCGAGCGTGGTGGGAGGTGGT
GGTGGGGCGGGGAAAGTGGGTGGTGGGAAGGGTGGGAGAGGTGAA
Right flanking sequence: Indices 26075 -- 26574
AGAGGTGGTAGAGGTGGTAGAGGTGGTCGTAGGATGTTCGTAGAGGCAGTGGTAGGAGTAGAGCG
TATCCAGTGGGGAGTGATCGACAGGACATGTTGAGGCGGCTCTAGATGCAAAGCCCCTGGAACAA
AGCAAAGTCGTGCATTAGAGGACACTGAGACACTGTAGCATCGGGGCTGAGCCGGTTGATGCCAT
CTCTGCGATCGACGGAGTTAAGGGTCCGTACTGTCGTATGGACAATCCCGGGTCGGCTGACTAGC
CGTGTGGCTGAACAGCACGGGCATTGTTTGGGCGAGCGGCCTCGGCTACTCAGGCCGACCAGCGT
TTCTTTCTCTGGGTGCTGCTTCGTCTGGTCGCACCTTGCAACCCGCTGCTTTTCCCCTCCACCAG
CTCTACTTCGCCCACTACGTAGGCACCTGTCTCCCACCATCTAGATCTGGCATGAATCTGCGGGG
TGATTATGTCAGAGGGTTGATGGCTCGCTTACGGTACGCCACGCG
Found at i:26059 original size:21 final size:21
Alignment explanation
Indices: 26033--26101 Score: 108
Period size: 21 Copynumber: 3.4 Consensus size: 21
26023 GGAGAGGTGA
26033 AGAGGTGGTGGTGGAGGTGGT
1 AGAGGTGGTGGTGGAGGTGGT
26054 AGAGGTGGTGGTGGAGGTGGT
1 AGAGGTGGTGGTGGAGGTGGT
*
26075 AGA---GGTGGTAGAGGTGGT
1 AGAGGTGGTGGTGGAGGTGGT
26093 AGAGGTGGT
1 AGAGGTGGT
26102 CGTAGGATGT
Statistics
Matches: 44, Mismatches: 1, Indels: 6
0.86 0.02 0.12
Matches are distributed among these distances:
18 17 0.39
21 27 0.61
ACGTcount: A:0.17, C:0.00, G:0.59, T:0.23
Consensus pattern (21 bp):
AGAGGTGGTGGTGGAGGTGGT
Left flanking sequence: Indices 25533 -- 26032
GGGTGCGCTGGTGCAATTGCCAGGTGCAGCTGCGGACGCGCCAAGAAACGCGTCGGGAGGTGGTT
GTGGGATGCCGGGCCGCCGTGGCGGTGTTTGGCACCGGGATCCGGTGATTTGCCAAGCCTGGCAA
CCGCCAGGGCCCCACACGGTAGATGAGTTATCGGTTTTATCATGCATATGTACCTAATGGGGAGA
GCAGGGGTGCAACCTATTGTGGTAATTGCGAGGGCTTATGCGCGGCTCGGTTGAGGGTGGGTGCT
GCTGGGCTTCGCGGTGGTGGCAGGGCAGCTGGACCCGGCGCGGTGGTTGTTGGGTGTGGTGGGGG
AGCGGGTCGCGTGACGGGCGTTGGCATTCATGTGGGAAAGTCCGTTGACCCCACATTTTTAAGGG
GCGAGGGTCTGGGGACGATTGTTCGGACGGACGCGGAAGTGGCAGGCGAGCGTGGTGGGAGGTGG
TGGTGGGGCGGGGAAAGTGGGTGGTGGGAAGGGTGGGAGAGGTGA
Right flanking sequence: Indices 26102 -- 26601
CGTAGGATGTTCGTAGAGGCAGTGGTAGGAGTAGAGCGTATCCAGTGGGGAGTGATCGACAGGAC
ATGTTGAGGCGGCTCTAGATGCAAAGCCCCTGGAACAAAGCAAAGTCGTGCATTAGAGGACACTG
AGACACTGTAGCATCGGGGCTGAGCCGGTTGATGCCATCTCTGCGATCGACGGAGTTAAGGGTCC
GTACTGTCGTATGGACAATCCCGGGTCGGCTGACTAGCCGTGTGGCTGAACAGCACGGGCATTGT
TTGGGCGAGCGGCCTCGGCTACTCAGGCCGACCAGCGTTTCTTTCTCTGGGTGCTGCTTCGTCTG
GTCGCACCTTGCAACCCGCTGCTTTTCCCCTCCACCAGCTCTACTTCGCCCACTACGTAGGCACC
TGTCTCCCACCATCTAGATCTGGCATGAATCTGCGGGGTGATTATGTCAGAGGGTTGATGGCTCG
CTTACGGTACGCCACGCGTCATGTGGGCTTCACATGAGCCGTGGA
Found at i:26062 original size:18 final size:18
Alignment explanation
Indices: 26039--26101 Score: 90
Period size: 18 Copynumber: 3.3 Consensus size: 18
26029 GTGAAGAGGT
26039 GGTGGTGGAGGTGGTAGA
1 GGTGGTGGAGGTGGTAGA
26057 GGTGGTGGTGGAGGTGGTAGA
1 ---GGTGGTGGAGGTGGTAGA
*
26078 GGTGGTAGAGGTGGTAGA
1 GGTGGTGGAGGTGGTAGA
26096 GGTGGT
1 GGTGGT
26102 CGTAGGATGT
Statistics
Matches: 41, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
18 23 0.56
21 18 0.44
ACGTcount: A:0.16, C:0.00, G:0.60, T:0.24
Consensus pattern (18 bp):
GGTGGTGGAGGTGGTAGA
Left flanking sequence: Indices 25539 -- 26038
GCTGGTGCAATTGCCAGGTGCAGCTGCGGACGCGCCAAGAAACGCGTCGGGAGGTGGTTGTGGGA
TGCCGGGCCGCCGTGGCGGTGTTTGGCACCGGGATCCGGTGATTTGCCAAGCCTGGCAACCGCCA
GGGCCCCACACGGTAGATGAGTTATCGGTTTTATCATGCATATGTACCTAATGGGGAGAGCAGGG
GTGCAACCTATTGTGGTAATTGCGAGGGCTTATGCGCGGCTCGGTTGAGGGTGGGTGCTGCTGGG
CTTCGCGGTGGTGGCAGGGCAGCTGGACCCGGCGCGGTGGTTGTTGGGTGTGGTGGGGGAGCGGG
TCGCGTGACGGGCGTTGGCATTCATGTGGGAAAGTCCGTTGACCCCACATTTTTAAGGGGCGAGG
GTCTGGGGACGATTGTTCGGACGGACGCGGAAGTGGCAGGCGAGCGTGGTGGGAGGTGGTGGTGG
GGCGGGGAAAGTGGGTGGTGGGAAGGGTGGGAGAGGTGAAGAGGT
Right flanking sequence: Indices 26102 -- 26601
CGTAGGATGTTCGTAGAGGCAGTGGTAGGAGTAGAGCGTATCCAGTGGGGAGTGATCGACAGGAC
ATGTTGAGGCGGCTCTAGATGCAAAGCCCCTGGAACAAAGCAAAGTCGTGCATTAGAGGACACTG
AGACACTGTAGCATCGGGGCTGAGCCGGTTGATGCCATCTCTGCGATCGACGGAGTTAAGGGTCC
GTACTGTCGTATGGACAATCCCGGGTCGGCTGACTAGCCGTGTGGCTGAACAGCACGGGCATTGT
TTGGGCGAGCGGCCTCGGCTACTCAGGCCGACCAGCGTTTCTTTCTCTGGGTGCTGCTTCGTCTG
GTCGCACCTTGCAACCCGCTGCTTTTCCCCTCCACCAGCTCTACTTCGCCCACTACGTAGGCACC
TGTCTCCCACCATCTAGATCTGGCATGAATCTGCGGGGTGATTATGTCAGAGGGTTGATGGCTCG
CTTACGGTACGCCACGCGTCATGTGGGCTTCACATGAGCCGTGGA
Found at i:26101 original size:9 final size:9
Alignment explanation
Indices: 26039--26101 Score: 81
Period size: 9 Copynumber: 6.7 Consensus size: 9
26029 GTGAAGAGGT
*
26039 GGTGGTGGA
1 GGTGGTAGA
26048 GGTGGTAGA
1 GGTGGTAGA
*
26057 GGTGGTGGTGGA
1 ---GGTGGTAGA
26069 GGTGGTAGA
1 GGTGGTAGA
26078 GGTGGTAGA
1 GGTGGTAGA
26087 GGTGGTAGA
1 GGTGGTAGA
26096 GGTGGT
1 GGTGGT
26102 CGTAGGATGT
Statistics
Matches: 48, Mismatches: 3, Indels: 6
0.84 0.05 0.11
Matches are distributed among these distances:
9 40 0.83
12 8 0.17
ACGTcount: A:0.16, C:0.00, G:0.60, T:0.24
Consensus pattern (9 bp):
GGTGGTAGA
Left flanking sequence: Indices 25539 -- 26038
GCTGGTGCAATTGCCAGGTGCAGCTGCGGACGCGCCAAGAAACGCGTCGGGAGGTGGTTGTGGGA
TGCCGGGCCGCCGTGGCGGTGTTTGGCACCGGGATCCGGTGATTTGCCAAGCCTGGCAACCGCCA
GGGCCCCACACGGTAGATGAGTTATCGGTTTTATCATGCATATGTACCTAATGGGGAGAGCAGGG
GTGCAACCTATTGTGGTAATTGCGAGGGCTTATGCGCGGCTCGGTTGAGGGTGGGTGCTGCTGGG
CTTCGCGGTGGTGGCAGGGCAGCTGGACCCGGCGCGGTGGTTGTTGGGTGTGGTGGGGGAGCGGG
TCGCGTGACGGGCGTTGGCATTCATGTGGGAAAGTCCGTTGACCCCACATTTTTAAGGGGCGAGG
GTCTGGGGACGATTGTTCGGACGGACGCGGAAGTGGCAGGCGAGCGTGGTGGGAGGTGGTGGTGG
GGCGGGGAAAGTGGGTGGTGGGAAGGGTGGGAGAGGTGAAGAGGT
Right flanking sequence: Indices 26102 -- 26601
CGTAGGATGTTCGTAGAGGCAGTGGTAGGAGTAGAGCGTATCCAGTGGGGAGTGATCGACAGGAC
ATGTTGAGGCGGCTCTAGATGCAAAGCCCCTGGAACAAAGCAAAGTCGTGCATTAGAGGACACTG
AGACACTGTAGCATCGGGGCTGAGCCGGTTGATGCCATCTCTGCGATCGACGGAGTTAAGGGTCC
GTACTGTCGTATGGACAATCCCGGGTCGGCTGACTAGCCGTGTGGCTGAACAGCACGGGCATTGT
TTGGGCGAGCGGCCTCGGCTACTCAGGCCGACCAGCGTTTCTTTCTCTGGGTGCTGCTTCGTCTG
GTCGCACCTTGCAACCCGCTGCTTTTCCCCTCCACCAGCTCTACTTCGCCCACTACGTAGGCACC
TGTCTCCCACCATCTAGATCTGGCATGAATCTGCGGGGTGATTATGTCAGAGGGTTGATGGCTCG
CTTACGGTACGCCACGCGTCATGTGGGCTTCACATGAGCCGTGGA
Found at i:26907 original size:11 final size:11
Alignment explanation
Indices: 26888--26971 Score: 89
Period size: 11 Copynumber: 7.7 Consensus size: 11
26878 CTTGTCTTGC
26888 CACCCACCCTA
1 CACCCACCCTA
*
26899 CATCCACCCTA
1 CACCCACCCTA
* * * *
26910 TATCCACCATC
1 CACCCACCCTA
*
26921 CACCCTCCCTA
1 CACCCACCCTA
*
26932 CACCCATCCTA
1 CACCCACCCTA
*
26943 CACACACCC-A
1 CACCCACCCTA
26953 CACCCACCCTA
1 CACCCACCCTA
26964 CACCCACC
1 CACCCACC
26972 TACCCCTACC
Statistics
Matches: 58, Mismatches: 14, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
10 9 0.16
11 49 0.84
ACGTcount: A:0.27, C:0.60, G:0.00, T:0.13
Consensus pattern (11 bp):
CACCCACCCTA
Left flanking sequence: Indices 26388 -- 26887
GCCGACCAGCGTTTCTTTCTCTGGGTGCTGCTTCGTCTGGTCGCACCTTGCAACCCGCTGCTTTT
CCCCTCCACCAGCTCTACTTCGCCCACTACGTAGGCACCTGTCTCCCACCATCTAGATCTGGCAT
GAATCTGCGGGGTGATTATGTCAGAGGGTTGATGGCTCGCTTACGGTACGCCACGCGTCATGTGG
GCTTCACATGAGCCGTGGACAGAGGTAGGACAATGGCCGGACACACCCACCAACGCCGCTACAGA
GCTCTAATGCCACTAATTCACCGTGTACACAATCTCCCCACACTAGCTAATCCCCCCCCACAACA
CTGGCTAACCACCCCGTGTAACCCCTGTGGCCCCTGTGGCCCCTGCAAAGTGGGCTGACCCTGGC
AGTGGTTTCCCTCGGTGGCCTGTTCGTGGCAATTTTGGCCGGGGTTACACCTTCCCCGAGAATCT
CACCACACAACCAGTGACCACCAACCCCACGAAGTCTTGTCTTGC
Right flanking sequence: Indices 26972 -- 27471
TACCCCTACCACCATCCCCCTCGCCTCCACTTGTCATCGCTCACCTCCCTTGCGCACTATACAGG
ACACCAACCTTGAAACCGTTGGCGCGCCCAAATCAACCCCGAAGCTTGCCGTCCACACACCCATC
TACCCGGCCAGTTTCAACAGATGAGCGACTCCGCACACGGCTACGGGGTGACACCGCCCATCCTG
GTGGCCAACCCCACCCCCAAGGAGAACGAGATGAACGATGGTCTCATCAAGGAACTCAAACTGCG
CAACTCGTTTGAAGCCGAGCTGGCCACCCGCAAGCGGGTGGAGGTGTTGACGATCTTGCAGAAGT
TGGCGGAGGACTTTGTCTACACCGTGTCCAAAAAGAAAAACATGTCGGAGGGCATGGCCAAGGAC
GCCGGCGGCAAGATCTTCACGTTTGGCTCGTACAAGCTCGGGGTGTACGGGCCCGGGTCCGACAT
CGACGCGTTGCTCGTGGTGCCCAAACACATCTCGCGAAGCGACTT
Found at i:26957 original size:21 final size:21
Alignment explanation
Indices: 26931--26971 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
26921 CACCCTCCCT
*
26931 ACACCCATCCTACACACACCC
1 ACACCCACCCTACACACACCC
*
26952 ACACCCACCCTACACCCACC
1 ACACCCACCCTACACACACC
26972 TACCCCTACC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.32, C:0.61, G:0.00, T:0.07
Consensus pattern (21 bp):
ACACCCACCCTACACACACCC
Left flanking sequence: Indices 26431 -- 26930
CACCTTGCAACCCGCTGCTTTTCCCCTCCACCAGCTCTACTTCGCCCACTACGTAGGCACCTGTC
TCCCACCATCTAGATCTGGCATGAATCTGCGGGGTGATTATGTCAGAGGGTTGATGGCTCGCTTA
CGGTACGCCACGCGTCATGTGGGCTTCACATGAGCCGTGGACAGAGGTAGGACAATGGCCGGACA
CACCCACCAACGCCGCTACAGAGCTCTAATGCCACTAATTCACCGTGTACACAATCTCCCCACAC
TAGCTAATCCCCCCCCACAACACTGGCTAACCACCCCGTGTAACCCCTGTGGCCCCTGTGGCCCC
TGCAAAGTGGGCTGACCCTGGCAGTGGTTTCCCTCGGTGGCCTGTTCGTGGCAATTTTGGCCGGG
GTTACACCTTCCCCGAGAATCTCACCACACAACCAGTGACCACCAACCCCACGAAGTCTTGTCTT
GCCACCCACCCTACATCCACCCTATATCCACCATCCACCCTCCCT
Right flanking sequence: Indices 26972 -- 27471
TACCCCTACCACCATCCCCCTCGCCTCCACTTGTCATCGCTCACCTCCCTTGCGCACTATACAGG
ACACCAACCTTGAAACCGTTGGCGCGCCCAAATCAACCCCGAAGCTTGCCGTCCACACACCCATC
TACCCGGCCAGTTTCAACAGATGAGCGACTCCGCACACGGCTACGGGGTGACACCGCCCATCCTG
GTGGCCAACCCCACCCCCAAGGAGAACGAGATGAACGATGGTCTCATCAAGGAACTCAAACTGCG
CAACTCGTTTGAAGCCGAGCTGGCCACCCGCAAGCGGGTGGAGGTGTTGACGATCTTGCAGAAGT
TGGCGGAGGACTTTGTCTACACCGTGTCCAAAAAGAAAAACATGTCGGAGGGCATGGCCAAGGAC
GCCGGCGGCAAGATCTTCACGTTTGGCTCGTACAAGCTCGGGGTGTACGGGCCCGGGTCCGACAT
CGACGCGTTGCTCGTGGTGCCCAAACACATCTCGCGAAGCGACTT
Found at i:29043 original size:18 final size:17
Alignment explanation
Indices: 29005--29068 Score: 78
Period size: 18 Copynumber: 3.7 Consensus size: 17
28995 TGAAAGATTG
*
29005 GTCTACTCTTTTAATTC
1 GTCTACTCTTTTAATTA
29022 GTCTACTCTTTTCAATTA
1 GTCTACTCTTTT-AATTA
29040 GTCTACAAT-TTTTAATTA
1 GTCTAC--TCTTTTAATTA
29058 GTCTACT-TTTT
1 GTCTACTCTTTT
29069 TTTTAAATTT
Statistics
Matches: 43, Mismatches: 1, Indels: 7
0.84 0.02 0.14
Matches are distributed among these distances:
16 5 0.12
17 12 0.28
18 21 0.49
19 4 0.09
20 1 0.02
ACGTcount: A:0.22, C:0.19, G:0.06, T:0.53
Consensus pattern (17 bp):
GTCTACTCTTTTAATTA
Left flanking sequence: Indices 28505 -- 29004
CTCCAGGTCGACATCAACAAGTGTGGCGACAAGAAGTTGGACATCCAGCAGCCGTGTGCCGACTT
CATCAGCAAATGCAAGGCGTGGGCCGACTTTGACGCGGCGGTGCACGGGATCAACATCCGCAACG
TCAAGGTGTTTGACTTGCCGAGCGACGTGTACGTGGCTGGCGAGGAGCGCCCGCAGCGGATTTCA
AAACGCAAGCGGGTGGTGGGAAAAGGCGAGGGCTCTAAGCGGCCCAAAAGTGTAGGCACCGTGGT
GTCGTGAGGGGATTTGCATTGTGATACGGTAGGGGATAAATAAACATGGAAACAAGTGAGACGGG
CGCGTCGAAGGTCGTAAATCGGTGTCAATGTGTGGCAGCGCCTTATTCTGGTGGATGGGCTATTT
TTGGTAGACAAGATGACCTAGGTGAAATGGCATTTTGAATGGCTTTTATGACCAGATGAGAAGTG
CTAAACGAGCTTGGAATGATAATGGATGGTTAAAATGAAAGATTG
Right flanking sequence: Indices 29069 -- 29568
TTTTAAATTTTACATTTTTCCAGGTATAATTACACTTCAGTCTGATTATGATATATTTCATTATT
CATAGATGCGCATAATTAAATAGACCCTAGCCCCGTCCCGACGAGAGCGACTTCTGCGAGGACAG
GATCGTGGGCTTGGCGTAGAGCGAGAACGGCTGCGGCACCGTGGGAGCCCGCAACGACCGTTCCA
GCCGCAGCGACGGGAGCTTCGGCGTGTCCGGCCCCTGGGTCGAAAGCAGTCGCATCGACCGCAGC
GACGGGAGCTTTGGCGTTTCCGTCGAGAGCAGCCGCATCGACCGCAGCTGGGGGAGCTTGGACTG
GGATGCAATGGTGGGCTGCGAGTACAGGGACAACGATCTCATCAGCGCCAGCGTGGGTATTTTCA
GGGGTTTCACCGAGGAATGCGGGGGCGAGCTCACCGGTGACGACGTGGCCCACAGCAGCATCAGC
CGCAGCGAGGAGGAGGGGGCTTTGTAGAACAGGTTCTTGGCCTGG
Found at i:29634 original size:18 final size:18
Alignment explanation
Indices: 29594--29649 Score: 62
Period size: 18 Copynumber: 3.1 Consensus size: 18
29584 TTGGTGTGGG
* *
29594 TGGTGTGGTTGTTGTAG-
1 TGGTGTGGTTGTTTTGGC
29611 TAGGTGTGGTCT-TTTTGGC
1 T-GGTGTGGT-TGTTTTGGC
29630 TGGTGTGGTTGTTTTGGC
1 TGGTGTGGTTGTTTTGGC
29648 TG
1 TG
29650 ATATGACTGG
Statistics
Matches: 33, Mismatches: 2, Indels: 7
0.79 0.05 0.17
Matches are distributed among these distances:
17 2 0.06
18 29 0.88
19 2 0.06
ACGTcount: A:0.04, C:0.05, G:0.43, T:0.48
Consensus pattern (18 bp):
TGGTGTGGTTGTTTTGGC
Left flanking sequence: Indices 29094 -- 29593
ATAATTACACTTCAGTCTGATTATGATATATTTCATTATTCATAGATGCGCATAATTAAATAGAC
CCTAGCCCCGTCCCGACGAGAGCGACTTCTGCGAGGACAGGATCGTGGGCTTGGCGTAGAGCGAG
AACGGCTGCGGCACCGTGGGAGCCCGCAACGACCGTTCCAGCCGCAGCGACGGGAGCTTCGGCGT
GTCCGGCCCCTGGGTCGAAAGCAGTCGCATCGACCGCAGCGACGGGAGCTTTGGCGTTTCCGTCG
AGAGCAGCCGCATCGACCGCAGCTGGGGGAGCTTGGACTGGGATGCAATGGTGGGCTGCGAGTAC
AGGGACAACGATCTCATCAGCGCCAGCGTGGGTATTTTCAGGGGTTTCACCGAGGAATGCGGGGG
CGAGCTCACCGGTGACGACGTGGCCCACAGCAGCATCAGCCGCAGCGAGGAGGAGGGGGCTTTGT
AGAACAGGTTCTTGGCCTGGGTCAGGGGGGTTGTGTTGGTGTGGG
Right flanking sequence: Indices 29650 -- 30149
ATATGACTGGCCTGGTTGGTGTTCGTCAGGTGGCTACTCTTCTCGTTGATCTTACTCTTAAACAG
GTTGCACGGGGTCTTGTAGAACAGGCGAGTGTCCGGTGTCGTCTGGCCAGCCTCCTTTTTGACTC
CGGCCATCTCAAGCGATGAGTAGCGGGCTCGCGAAGGCGGGTAGGGCTTGGCAAACCCCTGCGAC
CGCGGCTGAGCCACCTCGCTGAGGTTCGTCATCCGTCGCGACGGGGCAATTTTGCGGTCGTTGTC
CTTGGTCTTGAGAAGCGGCCCCGGGACCCGATCGTGCCCGGTTAACGTCTTGCGGCGCTTCAAAT
CGCCCTCCAGGGGCTGTTTGAGCAAGTCCTTTTTCTGCTTGTGGGCGGCGTAGTGGCTGGAGATG
GACTCCATGTTGTTGAACCGGCGGCGGTGTGCCCCCAGATACCGCTGGTTGCGACGCTCGGTCAC
CGAGTCCGTCAGGGTGTTGCAGTCGAAGGACATGTCGCTGATCTG
Found at i:33596 original size:13 final size:12
Alignment explanation
Indices: 33580--33716 Score: 103
Period size: 13 Copynumber: 10.4 Consensus size: 12
33570 GGTGGTTAGC
33580 GGTGGCTAGCAGT
1 GGTGGCTAGCA-T
* *
33593 GGTGGTTAGCAAC
1 GGTGGCTAGC-AT
33606 GGTGGCTAGCTAT
1 GGTGGCTAGC-AT
33619 GGTGGCTAGCTAT
1 GGTGGCTAGC-AT
33632 GGTGGCTAGCTAT
1 GGTGGCTAGC-AT
*
33645 GGTGGCTACGCGGT
1 GGTGGCTA-GC-AT
* * *
33659 GTTGGGTATGTAAT
1 GGTGGCTA-G-CAT
33673 GGTGGCTAGCAAT
1 GGTGGCTAGC-AT
*
33686 CGTGGCTAGCAAT
1 GGTGGCTAGC-AT
33699 GGTGGCTAGCATT
1 GGTGGCTAGCA-T
33712 GGTGG
1 GGTGG
33717 TTAGGCAATG
Statistics
Matches: 102, Mismatches: 17, Indels: 10
0.79 0.13 0.08
Matches are distributed among these distances:
12 1 0.01
13 83 0.81
14 18 0.18
ACGTcount: A:0.17, C:0.15, G:0.41, T:0.28
Consensus pattern (12 bp):
GGTGGCTAGCAT
Left flanking sequence: Indices 33080 -- 33579
AAGGGGCTCACCTGCTGCTTTTCGAAGGGGTTCACCAAGGAAGACATTATGATCAACAGCAAAAA
GCACGACGACGCCGCCGCTGCCCCCGTGGTGGTGGTGAGCCTGGCCAAAAAGGCTCGCCCGGCGA
AAATTGCCAAAAAGAAGCTGCTGCCGTCGCCGGTGGTGGCCAAGACCGCGATTGCTTCGTTGACG
CTGGCGTTGTCGATGTCTCTTGCGGGGGAGCTGGAGTACGCGGGCCCGGCGCCCACCATTCTCTT
GCCCTCCACCCGCAAGTCGCTGTGCTTCACCTGCCGCAAGCGCAAGGTCAAGTGTCTGTTCAACT
CGATGTTGAACAAGTGCGAGAGTTGCTACAAAAAGAATGTCGACTGCGTGTTTGACTGCAAGCCC
TCCAAGTGAGGCCCTGGGTTGTTTTAATAGGATGGATTATAGACGGTAATATATCATAGATTAAT
GAGTGAGTGTAGGTGGTGGTGGTGGTGGGAGCAGTGGTGGTTAGC
Right flanking sequence: Indices 33717 -- 34216
TTAGGCAATGGTGACTACGCAACAGTCGCTAAGTAATGTTGGCTAGGCCATTGCCTGGCTACCTA
GCCAACACCTCGGAGCAACGCTGCGACAGCTGCAGGGCCGCCAACCAGTTAGCTCACTTTTCCGG
AGAGTGTTATCCGATTGCCCCATTCTACACGGCTACCTGGCGGAGGTTAATTCCGAGTGAGGACC
TGCAGGATGTGGGGTCGCAAAGTTACCGCGTCGGTTATTGATCTGCGGCAATAGCACCCGCGGAG
TTTGACCCCGGGCCAGCGGGGTGCGATAATCCGGGGATTCCGTGGGTGGGCGTGGGTGGTGGGTG
TGGAGTAGTGGAGGGAATGGTGGGTGGTGGTTGGTAGAGGATGATTGGTGGATGTAATGGTAGAT
GTGTTTAGTAGATACATTGTACTCGAATCTGGTGTTGCTCGGTAATTCTTACGTGCTAATACCCG
GAACAGGCGTTAGCGCGTTCCGGAGATATGGAACACGATCTGGTG
Found at i:33608 original size:26 final size:25
Alignment explanation
Indices: 33569--33649 Score: 96
Period size: 26 Copynumber: 3.2 Consensus size: 25
33559 GTGGGAGCAG
33569 TGGTGGTTAG--CGGTGGCTAGC-A
1 TGGTGGTTAGCACGGTGGCTAGCTA
33591 GTGGTGGTTAGCAACGGTGGCTAGCTA
1 -TGGTGGTTAGC-ACGGTGGCTAGCTA
* *
33618 TGGTGGCTAGCTATGGTGGCTAGCTA
1 TGGTGGTTAGC-ACGGTGGCTAGCTA
33644 TGGTGG
1 TGGTGG
33650 CTACGCGGTG
Statistics
Matches: 51, Mismatches: 3, Indels: 5
0.86 0.05 0.08
Matches are distributed among these distances:
23 10 0.20
26 40 0.78
27 1 0.02
ACGTcount: A:0.15, C:0.14, G:0.43, T:0.28
Consensus pattern (25 bp):
TGGTGGTTAGCACGGTGGCTAGCTA
Left flanking sequence: Indices 33069 -- 33568
TGTGCCACATGAAGGGGCTCACCTGCTGCTTTTCGAAGGGGTTCACCAAGGAAGACATTATGATC
AACAGCAAAAAGCACGACGACGCCGCCGCTGCCCCCGTGGTGGTGGTGAGCCTGGCCAAAAAGGC
TCGCCCGGCGAAAATTGCCAAAAAGAAGCTGCTGCCGTCGCCGGTGGTGGCCAAGACCGCGATTG
CTTCGTTGACGCTGGCGTTGTCGATGTCTCTTGCGGGGGAGCTGGAGTACGCGGGCCCGGCGCCC
ACCATTCTCTTGCCCTCCACCCGCAAGTCGCTGTGCTTCACCTGCCGCAAGCGCAAGGTCAAGTG
TCTGTTCAACTCGATGTTGAACAAGTGCGAGAGTTGCTACAAAAAGAATGTCGACTGCGTGTTTG
ACTGCAAGCCCTCCAAGTGAGGCCCTGGGTTGTTTTAATAGGATGGATTATAGACGGTAATATAT
CATAGATTAATGAGTGAGTGTAGGTGGTGGTGGTGGTGGGAGCAG
Right flanking sequence: Indices 33650 -- 34149
CTACGCGGTGTTGGGTATGTAATGGTGGCTAGCAATCGTGGCTAGCAATGGTGGCTAGCATTGGT
GGTTAGGCAATGGTGACTACGCAACAGTCGCTAAGTAATGTTGGCTAGGCCATTGCCTGGCTACC
TAGCCAACACCTCGGAGCAACGCTGCGACAGCTGCAGGGCCGCCAACCAGTTAGCTCACTTTTCC
GGAGAGTGTTATCCGATTGCCCCATTCTACACGGCTACCTGGCGGAGGTTAATTCCGAGTGAGGA
CCTGCAGGATGTGGGGTCGCAAAGTTACCGCGTCGGTTATTGATCTGCGGCAATAGCACCCGCGG
AGTTTGACCCCGGGCCAGCGGGGTGCGATAATCCGGGGATTCCGTGGGTGGGCGTGGGTGGTGGG
TGTGGAGTAGTGGAGGGAATGGTGGGTGGTGGTTGGTAGAGGATGATTGGTGGATGTAATGGTAG
ATGTGTTTAGTAGATACATTGTACTCGAATCTGGTGTTGCTCGGT
Found at i:33650 original size:26 final size:26
Alignment explanation
Indices: 33580--33716 Score: 134
Period size: 26 Copynumber: 5.2 Consensus size: 26
33570 GGTGGTTAGC
* *
33580 GGTGGCTAGC-AGTGGTGGTTAGCAAC
1 GGTGGCTAGCTA-TGGTGGCTAGCAAT
*
33606 GGTGGCTAGCTATGGTGGCTAGCTAT
1 GGTGGCTAGCTATGGTGGCTAGCAAT
**
33632 GGTGGCTAGCTATGGTGGCTACGCGGT
1 GGTGGCTAGCTATGGTGGCTA-GCAAT
* *
33659 GTTGGGTATG-TAATGGTGGCTAGCAAT
1 GGTGGCTA-GCT-ATGGTGGCTAGCAAT
* * *
33686 CGTGGCTAGCAATGGTGGCTAGCATT
1 GGTGGCTAGCTATGGTGGCTAGCAAT
33712 GGTGG
1 GGTGG
33717 TTAGGCAATG
Statistics
Matches: 91, Mismatches: 15, Indels: 10
0.78 0.13 0.09
Matches are distributed among these distances:
26 61 0.67
27 19 0.21
28 11 0.12
ACGTcount: A:0.17, C:0.15, G:0.41, T:0.28
Consensus pattern (26 bp):
GGTGGCTAGCTATGGTGGCTAGCAAT
Left flanking sequence: Indices 33080 -- 33579
AAGGGGCTCACCTGCTGCTTTTCGAAGGGGTTCACCAAGGAAGACATTATGATCAACAGCAAAAA
GCACGACGACGCCGCCGCTGCCCCCGTGGTGGTGGTGAGCCTGGCCAAAAAGGCTCGCCCGGCGA
AAATTGCCAAAAAGAAGCTGCTGCCGTCGCCGGTGGTGGCCAAGACCGCGATTGCTTCGTTGACG
CTGGCGTTGTCGATGTCTCTTGCGGGGGAGCTGGAGTACGCGGGCCCGGCGCCCACCATTCTCTT
GCCCTCCACCCGCAAGTCGCTGTGCTTCACCTGCCGCAAGCGCAAGGTCAAGTGTCTGTTCAACT
CGATGTTGAACAAGTGCGAGAGTTGCTACAAAAAGAATGTCGACTGCGTGTTTGACTGCAAGCCC
TCCAAGTGAGGCCCTGGGTTGTTTTAATAGGATGGATTATAGACGGTAATATATCATAGATTAAT
GAGTGAGTGTAGGTGGTGGTGGTGGTGGGAGCAGTGGTGGTTAGC
Right flanking sequence: Indices 33717 -- 34216
TTAGGCAATGGTGACTACGCAACAGTCGCTAAGTAATGTTGGCTAGGCCATTGCCTGGCTACCTA
GCCAACACCTCGGAGCAACGCTGCGACAGCTGCAGGGCCGCCAACCAGTTAGCTCACTTTTCCGG
AGAGTGTTATCCGATTGCCCCATTCTACACGGCTACCTGGCGGAGGTTAATTCCGAGTGAGGACC
TGCAGGATGTGGGGTCGCAAAGTTACCGCGTCGGTTATTGATCTGCGGCAATAGCACCCGCGGAG
TTTGACCCCGGGCCAGCGGGGTGCGATAATCCGGGGATTCCGTGGGTGGGCGTGGGTGGTGGGTG
TGGAGTAGTGGAGGGAATGGTGGGTGGTGGTTGGTAGAGGATGATTGGTGGATGTAATGGTAGAT
GTGTTTAGTAGATACATTGTACTCGAATCTGGTGTTGCTCGGTAATTCTTACGTGCTAATACCCG
GAACAGGCGTTAGCGCGTTCCGGAGATATGGAACACGATCTGGTG
Found at i:35023 original size:42 final size:42
Alignment explanation
Indices: 34966--35060 Score: 156
Period size: 42 Copynumber: 2.2 Consensus size: 42
34956 GACTTTCCAT
34966 CCATCTCTAACCTCCACCTCTTTCCACGGTTGTTTCATTCCACA
1 CCATCTC--ACCTCCACCTCTTTCCACGGTTGTTTCATTCCACA
*
35010 CCATCTCACCTCCACCTCTTTCCACGGTTGTTTTATTCCACA
1 CCATCTCACCTCCACCTCTTTCCACGGTTGTTTCATTCCACA
35052 CCATC-CACC
1 CCATCTCACC
35061 CTGCCACAGC
Statistics
Matches: 50, Mismatches: 1, Indels: 3
0.93 0.02 0.06
Matches are distributed among these distances:
41 4 0.08
42 39 0.78
44 7 0.14
ACGTcount: A:0.18, C:0.43, G:0.06, T:0.33
Consensus pattern (42 bp):
CCATCTCACCTCCACCTCTTTCCACGGTTGTTTCATTCCACA
Left flanking sequence: Indices 34466 -- 34965
CGTCGCCACGGCTTTACACGCGCATGCAATGTTGCAGTCCTGGCCAAATGGCTTGCAGGGAGTAG
CGAAGAAGCCGAGGTCAGCCTTGAAATTATTAGACACTTCCTGTTCCGAGTCTTTCCGTAGTGCT
GGAATGTCTGTGGACGGGGAATGGACCGATTTTGTGAGCGGTTGTCACCAGCGGAGCGGTGGCTA
CGTGGGGCATAGGTGGTGACTACGGTGGTGACGCAGCGTGGCCCGGACAAATTGTCTCTCGCATT
GGTCAGTCACCATAGCCACCATAGCCAACATCGTCTCACTGTAACCTTATCTGTCACCGTCGCCT
CAAACTCTTACCTTGTCTGCCACCATCGTCTCACTAACCCTACCAGCTTCCCTTCCGTGTCATAT
TCCGCACACCAATACTCACACTGCGAACCTTACCAGGTATCTCTGCCACTACTGTTCTCTGTGCA
AACCATCCCACACTGCTAATCCAGCTTCCACTGCTGACTTTCCAT
Right flanking sequence: Indices 35061 -- 35560
CTGCCACAGCTAGTTTTTTCCACACACCTCCACCTTCCAAGGCTATTTCTTCATCCATCTCTCAC
TCCACTTCACCTGTCTCATTCCTATAAATACATTCTATTACTGACATCGTGTCTAATTACTCTCG
CTGGTCCGTAAGTAGCTGAGGAAGCACCCCGCAATCAGCAGCATGAGCTCGTCGGTGATGCTGGG
GTCCACCAAGAAATCGCAGTTGAGCTTGACCAACTTGGCCAGCCCGTCGGCCTTGTCGCCGTCGT
TGATCGCCTTGAAGATCTTCTCGAAAAGCGGCTTGTACTTGAGGTTCTCGGGATTGATGTTGTCC
TTGAGCGAGATCTTGACCGAGTTGGACGCCTTTTTGGCAAACTTGTTGGTCTTGAACAGCAAGTT
GATGGTGATTTTGTCTTTGGTGAGCTTGCGCTGCGGGCTCAAGTAGTTGAGCTGGAACACAAACT
GGATGAGGTCGAGGGTGGGGATCTTGACGTCGAACACAAGCCGCG
Found at i:38345 original size:15 final size:16
Alignment explanation
Indices: 38314--38365 Score: 88
Period size: 16 Copynumber: 3.3 Consensus size: 16
38304 GAATGGTAGC
38314 GGTGGGGAGAGGAGAA
1 GGTGGGGAGAGGAGAA
38330 GGTGGGGAGA-GAGAA
1 GGTGGGGAGAGGAGAA
*
38345 GGTGGGGAGAGGAAAA
1 GGTGGGGAGAGGAGAA
38361 GGTGG
1 GGTGG
38366 AGGGGTGGGG
Statistics
Matches: 34, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
15 15 0.44
16 19 0.56
ACGTcount: A:0.31, C:0.00, G:0.62, T:0.08
Consensus pattern (16 bp):
GGTGGGGAGAGGAGAA
Left flanking sequence: Indices 37814 -- 38313
CGGTCTCGAGGTCCAGGTTGGGCAATTTGGCGCCGCCAAACAGGTTGAGCGAGTTGGTCTGGAAC
GCGAGCTGGTCGAAGTGGAAGTCTTGCATGCGGAACCAGTTGAGCAAGTCGATTAGCTTTGAGAT
GTCGCGGGCGTTGGCCAGCCACTTGACCAAGGCGTAGAGCTTGACGAAGTGCTGGCGGATGGAGA
TGATCTGGTGCAAGAACTGTTTCTTGCGGAGGAGGTCTGGGTCCGAGTCGCGCAGGCCCGCCAAC
AGCTCGATCGCCGTCAGGAGCTGTTTGTAGGCCTCGGCTGCGTAGAACTTGAGGATGTTGGTGAG
GGGCACGATGTTGTTGGTGATGTGGGGGATGTCGGGCGGGGCCAGCGCGTGGTGGCCGTTGACCC
CGTTGGCGCCGTGCCCGTTGATGAGTTCGGTCATGCCCTCCGGTGGTGGTCTGGTTGGCGCTGGT
ACGAGCGTAGGGCTTGGAAAATGAGTGCGAAAAAAGAATGGTAGC
Right flanking sequence: Indices 38366 -- 38865
AGGGGTGGGGAGAGGTGGAGGGGTGGGTGTGATGGTTAGGGTGGGTGTGGTTGTGGTGGTTGGGT
GGTTGGTTGGGTGGTTGGTTGGGTGGTTGGTTGGGGTTGTGAATGGTTGTGGAGGTGGGAGTAGT
AGTATGGTAGTATAATAGTATGGTAGTATGGTAGTATGGTAGTAGCATGTTGTCACGGTGAAGCG
TGAAATCGTGTGTTGTGTTCATTGGGCCGTAATTATAATGGCGTACGTTAGTTTAGTTTCTCGGT
GTTCTGCGTGGTCCGTGAGTCGGTGGTTCGCAGTTTCACCATGTAGTGAATAAACTCTAGCTGTC
CACGGTGACGTATGCAACGCCATGTGTCACCTGGAGCCTAAGGGTTTCACTAGTACCGATAACAA
GCTGATTCACTAGTACCAGAGAACAAGCTGATTCATAGTACCCGTAACCGTTGATTCAATAGTAC
CGATACCCCGTTGGTTATGGTCCAATAACCCGAAGGCTCACTAGT
Found at i:38420 original size:24 final size:23
Alignment explanation
Indices: 38388--38455 Score: 79
Period size: 24 Copynumber: 3.0 Consensus size: 23
38378 AGGTGGAGGG
* *
38388 GTGGGTGTGATGGTTAGGGTGGGT
1 GTGGTTGTGGTGGTT-GGGTGGGT
38412 GTGGTTGTGGTGGTTGGGT-GGT
1 GTGGTTGTGGTGGTTGGGTGGGT
*
38434 -TGGTTG-GGTGGTTGGTTGGGT
1 GTGGTTGTGGTGGTTGGGTGGGT
38455 G
1 G
38456 GTTGGTTGGG
Statistics
Matches: 39, Mismatches: 3, Indels: 6
0.81 0.06 0.12
Matches are distributed among these distances:
20 10 0.26
21 9 0.23
22 3 0.08
23 4 0.10
24 13 0.33
ACGTcount: A:0.03, C:0.00, G:0.59, T:0.38
Consensus pattern (23 bp):
GTGGTTGTGGTGGTTGGGTGGGT
Left flanking sequence: Indices 37888 -- 38387
TCGAAGTGGAAGTCTTGCATGCGGAACCAGTTGAGCAAGTCGATTAGCTTTGAGATGTCGCGGGC
GTTGGCCAGCCACTTGACCAAGGCGTAGAGCTTGACGAAGTGCTGGCGGATGGAGATGATCTGGT
GCAAGAACTGTTTCTTGCGGAGGAGGTCTGGGTCCGAGTCGCGCAGGCCCGCCAACAGCTCGATC
GCCGTCAGGAGCTGTTTGTAGGCCTCGGCTGCGTAGAACTTGAGGATGTTGGTGAGGGGCACGAT
GTTGTTGGTGATGTGGGGGATGTCGGGCGGGGCCAGCGCGTGGTGGCCGTTGACCCCGTTGGCGC
CGTGCCCGTTGATGAGTTCGGTCATGCCCTCCGGTGGTGGTCTGGTTGGCGCTGGTACGAGCGTA
GGGCTTGGAAAATGAGTGCGAAAAAAGAATGGTAGCGGTGGGGAGAGGAGAAGGTGGGGAGAGAG
AAGGTGGGGAGAGGAAAAGGTGGAGGGGTGGGGAGAGGTGGAGGG
Right flanking sequence: Indices 38456 -- 38955
GTTGGTTGGGGTTGTGAATGGTTGTGGAGGTGGGAGTAGTAGTATGGTAGTATAATAGTATGGTA
GTATGGTAGTATGGTAGTAGCATGTTGTCACGGTGAAGCGTGAAATCGTGTGTTGTGTTCATTGG
GCCGTAATTATAATGGCGTACGTTAGTTTAGTTTCTCGGTGTTCTGCGTGGTCCGTGAGTCGGTG
GTTCGCAGTTTCACCATGTAGTGAATAAACTCTAGCTGTCCACGGTGACGTATGCAACGCCATGT
GTCACCTGGAGCCTAAGGGTTTCACTAGTACCGATAACAAGCTGATTCACTAGTACCAGAGAACA
AGCTGATTCATAGTACCCGTAACCGTTGATTCAATAGTACCGATACCCCGTTGGTTATGGTCCAA
TAACCCGAAGGCTCACTAGTAATACATCACATCCCTTAAACCGTCACTACACAAAACCATCACCC
TCATTCAACCCCACACGTTGTCATTCACCCCACACGTTGTCATAT
Found at i:38433 original size:8 final size:8
Alignment explanation
Indices: 38412--38460 Score: 62
Period size: 8 Copynumber: 6.0 Consensus size: 8
38402 TAGGGTGGGT
38412 GTGGTTGTG
1 GTGGTTG-G
38421 GTGGTTGG
1 GTGGTTGG
38429 GTGGTTGG
1 GTGGTTGG
* *
38437 TTGGGTGG
1 GTGGTTGG
*
38445 TTGGTTGG
1 GTGGTTGG
38453 GTGGTTGG
1 GTGGTTGG
38461 TTGGGGTTGT
Statistics
Matches: 36, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
8 29 0.81
9 7 0.19
ACGTcount: A:0.00, C:0.00, G:0.59, T:0.41
Consensus pattern (8 bp):
GTGGTTGG
Left flanking sequence: Indices 37912 -- 38411
AACCAGTTGAGCAAGTCGATTAGCTTTGAGATGTCGCGGGCGTTGGCCAGCCACTTGACCAAGGC
GTAGAGCTTGACGAAGTGCTGGCGGATGGAGATGATCTGGTGCAAGAACTGTTTCTTGCGGAGGA
GGTCTGGGTCCGAGTCGCGCAGGCCCGCCAACAGCTCGATCGCCGTCAGGAGCTGTTTGTAGGCC
TCGGCTGCGTAGAACTTGAGGATGTTGGTGAGGGGCACGATGTTGTTGGTGATGTGGGGGATGTC
GGGCGGGGCCAGCGCGTGGTGGCCGTTGACCCCGTTGGCGCCGTGCCCGTTGATGAGTTCGGTCA
TGCCCTCCGGTGGTGGTCTGGTTGGCGCTGGTACGAGCGTAGGGCTTGGAAAATGAGTGCGAAAA
AAGAATGGTAGCGGTGGGGAGAGGAGAAGGTGGGGAGAGAGAAGGTGGGGAGAGGAAAAGGTGGA
GGGGTGGGGAGAGGTGGAGGGGTGGGTGTGATGGTTAGGGTGGGT
Right flanking sequence: Indices 38461 -- 38960
TTGGGGTTGTGAATGGTTGTGGAGGTGGGAGTAGTAGTATGGTAGTATAATAGTATGGTAGTATG
GTAGTATGGTAGTAGCATGTTGTCACGGTGAAGCGTGAAATCGTGTGTTGTGTTCATTGGGCCGT
AATTATAATGGCGTACGTTAGTTTAGTTTCTCGGTGTTCTGCGTGGTCCGTGAGTCGGTGGTTCG
CAGTTTCACCATGTAGTGAATAAACTCTAGCTGTCCACGGTGACGTATGCAACGCCATGTGTCAC
CTGGAGCCTAAGGGTTTCACTAGTACCGATAACAAGCTGATTCACTAGTACCAGAGAACAAGCTG
ATTCATAGTACCCGTAACCGTTGATTCAATAGTACCGATACCCCGTTGGTTATGGTCCAATAACC
CGAAGGCTCACTAGTAATACATCACATCCCTTAAACCGTCACTACACAAAACCATCACCCTCATT
CAACCCCACACGTTGTCATTCACCCCACACGTTGTCATATAATCC
Found at i:38437 original size:12 final size:12
Alignment explanation
Indices: 38418--38465 Score: 89
Period size: 12 Copynumber: 4.1 Consensus size: 12
38408 GGGTGTGGTT
38418 GTGG-TGGTTGG
1 GTGGTTGGTTGG
38429 GTGGTTGGTTGG
1 GTGGTTGGTTGG
38441 GTGGTTGGTTGG
1 GTGGTTGGTTGG
38453 GTGGTTGGTTGG
1 GTGGTTGGTTGG
38465 G
1 G
38466 GTTGTGAATG
Statistics
Matches: 36, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
11 4 0.11
12 32 0.89
ACGTcount: A:0.00, C:0.00, G:0.60, T:0.40
Consensus pattern (12 bp):
GTGGTTGGTTGG
Left flanking sequence: Indices 37918 -- 38417
TTGAGCAAGTCGATTAGCTTTGAGATGTCGCGGGCGTTGGCCAGCCACTTGACCAAGGCGTAGAG
CTTGACGAAGTGCTGGCGGATGGAGATGATCTGGTGCAAGAACTGTTTCTTGCGGAGGAGGTCTG
GGTCCGAGTCGCGCAGGCCCGCCAACAGCTCGATCGCCGTCAGGAGCTGTTTGTAGGCCTCGGCT
GCGTAGAACTTGAGGATGTTGGTGAGGGGCACGATGTTGTTGGTGATGTGGGGGATGTCGGGCGG
GGCCAGCGCGTGGTGGCCGTTGACCCCGTTGGCGCCGTGCCCGTTGATGAGTTCGGTCATGCCCT
CCGGTGGTGGTCTGGTTGGCGCTGGTACGAGCGTAGGGCTTGGAAAATGAGTGCGAAAAAAGAAT
GGTAGCGGTGGGGAGAGGAGAAGGTGGGGAGAGAGAAGGTGGGGAGAGGAAAAGGTGGAGGGGTG
GGGAGAGGTGGAGGGGTGGGTGTGATGGTTAGGGTGGGTGTGGTT
Right flanking sequence: Indices 38466 -- 38965
GTTGTGAATGGTTGTGGAGGTGGGAGTAGTAGTATGGTAGTATAATAGTATGGTAGTATGGTAGT
ATGGTAGTAGCATGTTGTCACGGTGAAGCGTGAAATCGTGTGTTGTGTTCATTGGGCCGTAATTA
TAATGGCGTACGTTAGTTTAGTTTCTCGGTGTTCTGCGTGGTCCGTGAGTCGGTGGTTCGCAGTT
TCACCATGTAGTGAATAAACTCTAGCTGTCCACGGTGACGTATGCAACGCCATGTGTCACCTGGA
GCCTAAGGGTTTCACTAGTACCGATAACAAGCTGATTCACTAGTACCAGAGAACAAGCTGATTCA
TAGTACCCGTAACCGTTGATTCAATAGTACCGATACCCCGTTGGTTATGGTCCAATAACCCGAAG
GCTCACTAGTAATACATCACATCCCTTAAACCGTCACTACACAAAACCATCACCCTCATTCAACC
CCACACGTTGTCATTCACCCCACACGTTGTCATATAATCCACACG
Found at i:38461 original size:4 final size:4
Alignment explanation
Indices: 38422--38464 Score: 59
Period size: 4 Copynumber: 10.8 Consensus size: 4
38412 GTGGTTGTGG
* * *
38422 TGGT TGGG TGGT TGGT TGGG TGGT TGGT TGGG TGGT TGGT TGG
1 TGGT TGGT TGGT TGGT TGGT TGGT TGGT TGGT TGGT TGGT TGG
38465 GGTTGTGAAT
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
4 33 1.00
ACGTcount: A:0.00, C:0.00, G:0.58, T:0.42
Consensus pattern (4 bp):
TGGT
Left flanking sequence: Indices 37922 -- 38421
GCAAGTCGATTAGCTTTGAGATGTCGCGGGCGTTGGCCAGCCACTTGACCAAGGCGTAGAGCTTG
ACGAAGTGCTGGCGGATGGAGATGATCTGGTGCAAGAACTGTTTCTTGCGGAGGAGGTCTGGGTC
CGAGTCGCGCAGGCCCGCCAACAGCTCGATCGCCGTCAGGAGCTGTTTGTAGGCCTCGGCTGCGT
AGAACTTGAGGATGTTGGTGAGGGGCACGATGTTGTTGGTGATGTGGGGGATGTCGGGCGGGGCC
AGCGCGTGGTGGCCGTTGACCCCGTTGGCGCCGTGCCCGTTGATGAGTTCGGTCATGCCCTCCGG
TGGTGGTCTGGTTGGCGCTGGTACGAGCGTAGGGCTTGGAAAATGAGTGCGAAAAAAGAATGGTA
GCGGTGGGGAGAGGAGAAGGTGGGGAGAGAGAAGGTGGGGAGAGGAAAAGGTGGAGGGGTGGGGA
GAGGTGGAGGGGTGGGTGTGATGGTTAGGGTGGGTGTGGTTGTGG
Right flanking sequence: Indices 38465 -- 38964
GGTTGTGAATGGTTGTGGAGGTGGGAGTAGTAGTATGGTAGTATAATAGTATGGTAGTATGGTAG
TATGGTAGTAGCATGTTGTCACGGTGAAGCGTGAAATCGTGTGTTGTGTTCATTGGGCCGTAATT
ATAATGGCGTACGTTAGTTTAGTTTCTCGGTGTTCTGCGTGGTCCGTGAGTCGGTGGTTCGCAGT
TTCACCATGTAGTGAATAAACTCTAGCTGTCCACGGTGACGTATGCAACGCCATGTGTCACCTGG
AGCCTAAGGGTTTCACTAGTACCGATAACAAGCTGATTCACTAGTACCAGAGAACAAGCTGATTC
ATAGTACCCGTAACCGTTGATTCAATAGTACCGATACCCCGTTGGTTATGGTCCAATAACCCGAA
GGCTCACTAGTAATACATCACATCCCTTAAACCGTCACTACACAAAACCATCACCCTCATTCAAC
CCCACACGTTGTCATTCACCCCACACGTTGTCATATAATCCACAC
Found at i:38507 original size:8 final size:8
Alignment explanation
Indices: 38494--38539 Score: 74
Period size: 8 Copynumber: 5.8 Consensus size: 8
38484 GGTGGGAGTA
38494 GTAGTATG
1 GTAGTATG
*
38502 GTAGTATA
1 GTAGTATG
*
38510 ATAGTATG
1 GTAGTATG
38518 GTAGTATG
1 GTAGTATG
38526 GTAGTATG
1 GTAGTATG
38534 GTAGTA
1 GTAGTA
38540 GCATGTTGTC
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
8 34 1.00
ACGTcount: A:0.30, C:0.00, G:0.33, T:0.37
Consensus pattern (8 bp):
GTAGTATG
Left flanking sequence: Indices 37994 -- 38493
GCTGGCGGATGGAGATGATCTGGTGCAAGAACTGTTTCTTGCGGAGGAGGTCTGGGTCCGAGTCG
CGCAGGCCCGCCAACAGCTCGATCGCCGTCAGGAGCTGTTTGTAGGCCTCGGCTGCGTAGAACTT
GAGGATGTTGGTGAGGGGCACGATGTTGTTGGTGATGTGGGGGATGTCGGGCGGGGCCAGCGCGT
GGTGGCCGTTGACCCCGTTGGCGCCGTGCCCGTTGATGAGTTCGGTCATGCCCTCCGGTGGTGGT
CTGGTTGGCGCTGGTACGAGCGTAGGGCTTGGAAAATGAGTGCGAAAAAAGAATGGTAGCGGTGG
GGAGAGGAGAAGGTGGGGAGAGAGAAGGTGGGGAGAGGAAAAGGTGGAGGGGTGGGGAGAGGTGG
AGGGGTGGGTGTGATGGTTAGGGTGGGTGTGGTTGTGGTGGTTGGGTGGTTGGTTGGGTGGTTGG
TTGGGTGGTTGGTTGGGGTTGTGAATGGTTGTGGAGGTGGGAGTA
Right flanking sequence: Indices 38540 -- 39039
GCATGTTGTCACGGTGAAGCGTGAAATCGTGTGTTGTGTTCATTGGGCCGTAATTATAATGGCGT
ACGTTAGTTTAGTTTCTCGGTGTTCTGCGTGGTCCGTGAGTCGGTGGTTCGCAGTTTCACCATGT
AGTGAATAAACTCTAGCTGTCCACGGTGACGTATGCAACGCCATGTGTCACCTGGAGCCTAAGGG
TTTCACTAGTACCGATAACAAGCTGATTCACTAGTACCAGAGAACAAGCTGATTCATAGTACCCG
TAACCGTTGATTCAATAGTACCGATACCCCGTTGGTTATGGTCCAATAACCCGAAGGCTCACTAG
TAATACATCACATCCCTTAAACCGTCACTACACAAAACCATCACCCTCATTCAACCCCACACGTT
GTCATTCACCCCACACGTTGTCATATAATCCACACGTTGTCATACAACCCCACAAGTTGCCATTC
AACCCCACATTCACCTACTTCCTTAACTGTTCATAACGACATTAC
Found at i:38770 original size:25 final size:25
Alignment explanation
Indices: 38736--38825 Score: 105
Period size: 25 Copynumber: 3.6 Consensus size: 25
38726 GCCTAAGGGT
38736 TTCACTAGTACCGATAACAAGCTGA
1 TTCACTAGTACCGATAACAAGCTGA
*
38761 TTCACTAGTACCAGAGAACAAGCTGA
1 TTCACTAGTACC-GATAACAAGCTGA
* *
38787 TTCA-TAGTACCCG-TAAC-CGTTGA
1 TTCACTAGTA-CCGATAACAAGCTGA
*
38810 TTCAATAGTACCGATA
1 TTCACTAGTACCGATA
38826 CCCCGTTGGT
Statistics
Matches: 57, Mismatches: 4, Indels: 9
0.81 0.06 0.13
Matches are distributed among these distances:
23 11 0.19
24 10 0.18
25 18 0.32
26 18 0.32
ACGTcount: A:0.34, C:0.23, G:0.17, T:0.26
Consensus pattern (25 bp):
TTCACTAGTACCGATAACAAGCTGA
Left flanking sequence: Indices 38236 -- 38735
ATGCCCTCCGGTGGTGGTCTGGTTGGCGCTGGTACGAGCGTAGGGCTTGGAAAATGAGTGCGAAA
AAAGAATGGTAGCGGTGGGGAGAGGAGAAGGTGGGGAGAGAGAAGGTGGGGAGAGGAAAAGGTGG
AGGGGTGGGGAGAGGTGGAGGGGTGGGTGTGATGGTTAGGGTGGGTGTGGTTGTGGTGGTTGGGT
GGTTGGTTGGGTGGTTGGTTGGGTGGTTGGTTGGGGTTGTGAATGGTTGTGGAGGTGGGAGTAGT
AGTATGGTAGTATAATAGTATGGTAGTATGGTAGTATGGTAGTAGCATGTTGTCACGGTGAAGCG
TGAAATCGTGTGTTGTGTTCATTGGGCCGTAATTATAATGGCGTACGTTAGTTTAGTTTCTCGGT
GTTCTGCGTGGTCCGTGAGTCGGTGGTTCGCAGTTTCACCATGTAGTGAATAAACTCTAGCTGTC
CACGGTGACGTATGCAACGCCATGTGTCACCTGGAGCCTAAGGGT
Right flanking sequence: Indices 38826 -- 39325
CCCCGTTGGTTATGGTCCAATAACCCGAAGGCTCACTAGTAATACATCACATCCCTTAAACCGTC
ACTACACAAAACCATCACCCTCATTCAACCCCACACGTTGTCATTCACCCCACACGTTGTCATAT
AATCCACACGTTGTCATACAACCCCACAAGTTGCCATTCAACCCCACATTCACCTACTTCCTTAA
CTGTTCATAACGACATTACTAATACAAATGCTACAGTAGAAACTCCGCAGGCACCGCCGCCGCGT
CCACCGTCTGCGACACGTGCTCGCGCTGGTCCTTGCGCACCAACAACCCCTCCACCGTGTGCTTC
AACCGCTCAATCACCGTGCGCACCTCGTCGGGGAACGTGTCGTCCTCGAGATACCGCGCCACCTT
GCACCACTGCCAGTCGATCATGGCGATGCGGTGCGACGGGTTGTTTTTGGCCCGGCGGCGACGGA
GCACCAGCGGCAGCACCCCGGCCATCCCCTGGTCAGCCCCCTCGG
Found at i:38942 original size:19 final size:20
Alignment explanation
Indices: 38911--39003 Score: 120
Period size: 19 Copynumber: 4.8 Consensus size: 20
38901 ACCATCACCC
38911 TCATTCAACCCCACACGTTG
1 TCATTCAACCCCACACGTTG
38931 TCATTC-ACCCCACACGTTG
1 TCATTCAACCCCACACGTTG
*
38950 TCATAT-AA-TCCACACGTTG
1 TCAT-TCAACCCCACACGTTG
* *
38969 TCATACAACCCCACAAGTTG
1 TCATTCAACCCCACACGTTG
*
38989 CCATTCAACCCCACA
1 TCATTCAACCCCACA
39004 TTCACCTACT
Statistics
Matches: 63, Mismatches: 6, Indels: 8
0.82 0.08 0.10
Matches are distributed among these distances:
19 33 0.52
20 30 0.48
ACGTcount: A:0.29, C:0.39, G:0.09, T:0.24
Consensus pattern (20 bp):
TCATTCAACCCCACACGTTG
Left flanking sequence: Indices 38411 -- 38910
TGTGGTTGTGGTGGTTGGGTGGTTGGTTGGGTGGTTGGTTGGGTGGTTGGTTGGGGTTGTGAATG
GTTGTGGAGGTGGGAGTAGTAGTATGGTAGTATAATAGTATGGTAGTATGGTAGTATGGTAGTAG
CATGTTGTCACGGTGAAGCGTGAAATCGTGTGTTGTGTTCATTGGGCCGTAATTATAATGGCGTA
CGTTAGTTTAGTTTCTCGGTGTTCTGCGTGGTCCGTGAGTCGGTGGTTCGCAGTTTCACCATGTA
GTGAATAAACTCTAGCTGTCCACGGTGACGTATGCAACGCCATGTGTCACCTGGAGCCTAAGGGT
TTCACTAGTACCGATAACAAGCTGATTCACTAGTACCAGAGAACAAGCTGATTCATAGTACCCGT
AACCGTTGATTCAATAGTACCGATACCCCGTTGGTTATGGTCCAATAACCCGAAGGCTCACTAGT
AATACATCACATCCCTTAAACCGTCACTACACAAAACCATCACCC
Right flanking sequence: Indices 39004 -- 39503
TTCACCTACTTCCTTAACTGTTCATAACGACATTACTAATACAAATGCTACAGTAGAAACTCCGC
AGGCACCGCCGCCGCGTCCACCGTCTGCGACACGTGCTCGCGCTGGTCCTTGCGCACCAACAACC
CCTCCACCGTGTGCTTCAACCGCTCAATCACCGTGCGCACCTCGTCGGGGAACGTGTCGTCCTCG
AGATACCGCGCCACCTTGCACCACTGCCAGTCGATCATGGCGATGCGGTGCGACGGGTTGTTTTT
GGCCCGGCGGCGACGGAGCACCAGCGGCAGCACCCCGGCCATCCCCTGGTCAGCCCCCTCGGGGA
GCGGGTCAAACGGTAGTCTCTCCTCCAAAAGCGCGTACAACACCACCCCCACCAGCCACAGGTCG
GTGAGCTTGCCGTTGTACTCGAGCCCCATGAGCACCTCGGGCGGCACATAGTCGGTGGACCCGCA
CCGGGTCAGCAACAACTCGTCGGGCCGCGCCAACCGCTTCAGCAA
Found at i:41618 original size:20 final size:20
Alignment explanation
Indices: 41590--41633 Score: 70
Period size: 20 Copynumber: 2.2 Consensus size: 20
41580 CTCGGTAGGT
* *
41590 GCCATTGAAAGTGGACTTGA
1 GCCACTGAAAGTGGACTTAA
41610 GCCACTGAAAGTGGACTTAA
1 GCCACTGAAAGTGGACTTAA
41630 GCCA
1 GCCA
41634 TAAGTGGAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.32, C:0.20, G:0.27, T:0.20
Consensus pattern (20 bp):
GCCACTGAAAGTGGACTTAA
Left flanking sequence: Indices 41090 -- 41589
GCTCTGGCGGGCTCGCAATTGCGCGCTGCCATTGGATGACGTTCCCCACACCGTGGAAATTCCCC
GCATATCGCACGCATATTGAAGGGTTTCTGCCGTTTCAGGGTCCTCCTGCCTATCTCGGCAACAC
ACGGGGATAGCCACCAACAATGGTGTCCGGGGTAGGCGGTGACGACACAATGAAGGGATGGAGCA
AGAGCCGAAGCGGCCCGGGCGTTGGTTGCTGGGTGTGGCGGTGTTGTGATAGGTGGGTTATCGTA
AATTTCATCTGGGCTTGGCGGGTGGCGTAGGGTAGAGATTATGCAATGGGCGGGTCGGATTTATG
GACCGCGGAGGTGGACGGAGCCAGTGGTGCGCGCTGACGAGCTGGCCGGTTGCTAAGCAACTCTA
CGTTTGTGACACCTCACATTCCTTATCGACGTACATATATTTTCTAAGATCTGGTGCTGCTCTAG
GCTATTTGCAGCCAGTGGACTCTTGGCAGATGGGACTCGGTAGGT
Right flanking sequence: Indices 41634 -- 42133
TAAGTGGAAATTAAGCCAAAAGTCGAATTAAGCCAAGTGGACATGAGCCATTGGAGTGGACTTGA
GTGGAACTGGTTCAAATGAAATTACGCCATTGAGGCTGGCAATGGCTCAAGACACAGTTTCGCTG
CCTTCAGTGAGTTGAACAGAGGTGAACAGAATAACCAGACCTTTAGAGTCCCCGGGCAGATCGTT
ATGAGGAATCACCAGAGAGCGCTTAGTCATCTGGTAACCAACGTGTGGCGGTAGTACGAGACTAG
GGACACGGTACAAAGAATAAGGCACCAGCTGGGGGGCCGCAGGCGGCGCCCCCCAGACCCCCCAC
CGCTTTCTTCCTCTTACATATACCCAACAGAATAACGGCATTATATTCCACTGGCTGATCTCCAC
TGGCTGATCACACTCTTACATAAACCCCTCCAACACCCGTAGCGCCTTCTCCAACCGCTGGATCC
CCACCTCGTACCGGTGCTCGTCAATCACCATGTCCAGCGTCAACC
Found at i:41640 original size:17 final size:17
Alignment explanation
Indices: 41618--41668 Score: 66
Period size: 17 Copynumber: 2.9 Consensus size: 17
41608 GAGCCACTGA
*
41618 AAGTGGACTTAAGCCAT
1 AAGTGGAATTAAGCCAT
*
41635 AAGTGGAAATTAAGCCAA
1 AAGTGG-AATTAAGCCAT
*
41653 AAGTCGAATTAAGCCA
1 AAGTGGAATTAAGCCA
41669 AGTGGACATG
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
17 16 0.53
18 14 0.47
ACGTcount: A:0.43, C:0.16, G:0.22, T:0.20
Consensus pattern (17 bp):
AAGTGGAATTAAGCCAT
Left flanking sequence: Indices 41118 -- 41617
CCATTGGATGACGTTCCCCACACCGTGGAAATTCCCCGCATATCGCACGCATATTGAAGGGTTTC
TGCCGTTTCAGGGTCCTCCTGCCTATCTCGGCAACACACGGGGATAGCCACCAACAATGGTGTCC
GGGGTAGGCGGTGACGACACAATGAAGGGATGGAGCAAGAGCCGAAGCGGCCCGGGCGTTGGTTG
CTGGGTGTGGCGGTGTTGTGATAGGTGGGTTATCGTAAATTTCATCTGGGCTTGGCGGGTGGCGT
AGGGTAGAGATTATGCAATGGGCGGGTCGGATTTATGGACCGCGGAGGTGGACGGAGCCAGTGGT
GCGCGCTGACGAGCTGGCCGGTTGCTAAGCAACTCTACGTTTGTGACACCTCACATTCCTTATCG
ACGTACATATATTTTCTAAGATCTGGTGCTGCTCTAGGCTATTTGCAGCCAGTGGACTCTTGGCA
GATGGGACTCGGTAGGTGCCATTGAAAGTGGACTTGAGCCACTGA
Right flanking sequence: Indices 41669 -- 42168
AGTGGACATGAGCCATTGGAGTGGACTTGAGTGGAACTGGTTCAAATGAAATTACGCCATTGAGG
CTGGCAATGGCTCAAGACACAGTTTCGCTGCCTTCAGTGAGTTGAACAGAGGTGAACAGAATAAC
CAGACCTTTAGAGTCCCCGGGCAGATCGTTATGAGGAATCACCAGAGAGCGCTTAGTCATCTGGT
AACCAACGTGTGGCGGTAGTACGAGACTAGGGACACGGTACAAAGAATAAGGCACCAGCTGGGGG
GCCGCAGGCGGCGCCCCCCAGACCCCCCACCGCTTTCTTCCTCTTACATATACCCAACAGAATAA
CGGCATTATATTCCACTGGCTGATCTCCACTGGCTGATCACACTCTTACATAAACCCCTCCAACA
CCCGTAGCGCCTTCTCCAACCGCTGGATCCCCACCTCGTACCGGTGCTCGTCAATCACCATGTCC
AGCGTCAACCGCAGCAACAGGTCCACGATCTTCTCGATCAACTGC
Found at i:41669 original size:17 final size:18
Alignment explanation
Indices: 41626--41669 Score: 63
Period size: 18 Copynumber: 2.5 Consensus size: 18
41616 GAAAGTGGAC
* *
41626 TTAAGCCATAAGTGGAAA
1 TTAAGCCAAAAGTCGAAA
41644 TTAAGCCAAAAGTCG-AA
1 TTAAGCCAAAAGTCGAAA
41661 TTAAGCCAA
1 TTAAGCCAA
41670 GTGGACATGA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
17 11 0.46
18 13 0.54
ACGTcount: A:0.45, C:0.16, G:0.18, T:0.20
Consensus pattern (18 bp):
TTAAGCCAAAAGTCGAAA
Left flanking sequence: Indices 41126 -- 41625
TGACGTTCCCCACACCGTGGAAATTCCCCGCATATCGCACGCATATTGAAGGGTTTCTGCCGTTT
CAGGGTCCTCCTGCCTATCTCGGCAACACACGGGGATAGCCACCAACAATGGTGTCCGGGGTAGG
CGGTGACGACACAATGAAGGGATGGAGCAAGAGCCGAAGCGGCCCGGGCGTTGGTTGCTGGGTGT
GGCGGTGTTGTGATAGGTGGGTTATCGTAAATTTCATCTGGGCTTGGCGGGTGGCGTAGGGTAGA
GATTATGCAATGGGCGGGTCGGATTTATGGACCGCGGAGGTGGACGGAGCCAGTGGTGCGCGCTG
ACGAGCTGGCCGGTTGCTAAGCAACTCTACGTTTGTGACACCTCACATTCCTTATCGACGTACAT
ATATTTTCTAAGATCTGGTGCTGCTCTAGGCTATTTGCAGCCAGTGGACTCTTGGCAGATGGGAC
TCGGTAGGTGCCATTGAAAGTGGACTTGAGCCACTGAAAGTGGAC
Right flanking sequence: Indices 41670 -- 42169
GTGGACATGAGCCATTGGAGTGGACTTGAGTGGAACTGGTTCAAATGAAATTACGCCATTGAGGC
TGGCAATGGCTCAAGACACAGTTTCGCTGCCTTCAGTGAGTTGAACAGAGGTGAACAGAATAACC
AGACCTTTAGAGTCCCCGGGCAGATCGTTATGAGGAATCACCAGAGAGCGCTTAGTCATCTGGTA
ACCAACGTGTGGCGGTAGTACGAGACTAGGGACACGGTACAAAGAATAAGGCACCAGCTGGGGGG
CCGCAGGCGGCGCCCCCCAGACCCCCCACCGCTTTCTTCCTCTTACATATACCCAACAGAATAAC
GGCATTATATTCCACTGGCTGATCTCCACTGGCTGATCACACTCTTACATAAACCCCTCCAACAC
CCGTAGCGCCTTCTCCAACCGCTGGATCCCCACCTCGTACCGGTGCTCGTCAATCACCATGTCCA
GCGTCAACCGCAGCAACAGGTCCACGATCTTCTCGATCAACTGCT
Found at i:42024 original size:14 final size:14
Alignment explanation
Indices: 42005--42032 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
41995 GGCATTATAT
42005 TCCACTGGCTGATC
1 TCCACTGGCTGATC
42019 TCCACTGGCTGATC
1 TCCACTGGCTGATC
42033 ACACTCTTAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.14, C:0.36, G:0.21, T:0.29
Consensus pattern (14 bp):
TCCACTGGCTGATC
Left flanking sequence: Indices 41505 -- 42004
TCGACGTACATATATTTTCTAAGATCTGGTGCTGCTCTAGGCTATTTGCAGCCAGTGGACTCTTG
GCAGATGGGACTCGGTAGGTGCCATTGAAAGTGGACTTGAGCCACTGAAAGTGGACTTAAGCCAT
AAGTGGAAATTAAGCCAAAAGTCGAATTAAGCCAAGTGGACATGAGCCATTGGAGTGGACTTGAG
TGGAACTGGTTCAAATGAAATTACGCCATTGAGGCTGGCAATGGCTCAAGACACAGTTTCGCTGC
CTTCAGTGAGTTGAACAGAGGTGAACAGAATAACCAGACCTTTAGAGTCCCCGGGCAGATCGTTA
TGAGGAATCACCAGAGAGCGCTTAGTCATCTGGTAACCAACGTGTGGCGGTAGTACGAGACTAGG
GACACGGTACAAAGAATAAGGCACCAGCTGGGGGGCCGCAGGCGGCGCCCCCCAGACCCCCCACC
GCTTTCTTCCTCTTACATATACCCAACAGAATAACGGCATTATAT
Right flanking sequence: Indices 42033 -- 42532
ACACTCTTACATAAACCCCTCCAACACCCGTAGCGCCTTCTCCAACCGCTGGATCCCCACCTCGT
ACCGGTGCTCGTCAATCACCATGTCCAGCGTCAACCGCAGCAACAGGTCCACGATCTTCTCGATC
AACTGCTTCTCCTTCACCGGCAAGTTGAGCTTCGAGAACTCCTCGCCAATCACCGTGCCGTTGAC
ACTCTCCAACAAGCTCACCAAGGTGGCGTACAGGAACGGTTTGAGGTCGGACCCGCGCTTGCTCT
GGCGCTTGCGGCTGCGGCTCGGCTTGCGCTTGGTGGTGGGGTTGTGGATGAACACCGGGTCGCCG
ATGTCGTAGTACTCGTCGTCGTCGTCGTTGCCCGTGGCGGGCGGTAACGGCGCCCGCAGCATTGG
AACCTGTTTGTGGGGCGGAGGCGGCGGCGGGCCCGGGTTAAATGAGGTGTCCTCGGGCACCGGGG
CTACAAACTCGCGGTCCACCAGCAGGATGTCCAGGGGCTGGCTCA
Found at i:42858 original size:21 final size:21
Alignment explanation
Indices: 42834--42890 Score: 64
Period size: 21 Copynumber: 2.7 Consensus size: 21
42824 GGCCGGAGCC
42834 GTGGGGTCCGTG-GGGTCCCTG
1 GTGGGGTCCGTGAGGG-CCCTG
*
42855 GTGGTGTCCGTGAGGGCCCTG
1 GTGGGGTCCGTGAGGGCCCTG
*
42876 AG-GAGGTCCGTGAGG
1 -GTGGGGTCCGTGAGG
42891 AGGGAGTTGG
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
21 27 0.87
22 4 0.13
ACGTcount: A:0.07, C:0.21, G:0.51, T:0.21
Consensus pattern (21 bp):
GTGGGGTCCGTGAGGGCCCTG
Left flanking sequence: Indices 42334 -- 42833
TTGTGGATGAACACCGGGTCGCCGATGTCGTAGTACTCGTCGTCGTCGTCGTTGCCCGTGGCGGG
CGGTAACGGCGCCCGCAGCATTGGAACCTGTTTGTGGGGCGGAGGCGGCGGCGGGCCCGGGTTAA
ATGAGGTGTCCTCGGGCACCGGGGCTACAAACTCGCGGTCCACCAGCAGGATGTCCAGGGGCTGG
CTCACGTGGTCCTCCTCCTTGGCGTCGGTCAGCGAAAAATCGGTGCCCTCCTCGATGCCAAACAG
ATCGCCCTTTGAGAACCGCTTGGTGGAGGCGTCGCGGGCTCGCAGCACCTGGTCGGCTGACGGAC
GCGGAGGTACACCGGCAGAGATGATCAGCTGGATGTCGCCCAGGCCCTGGCGCTGGTGGCGGTGC
AGGTCCAGAAGCCGTTTGGCCTCGAGGCTGCCGGGGGGTATCTGGCGCTTGTCGGGCAGGCGGGC
GTTCGGGTGGGTGATGTGGGAGCCCGGGTAGGCGTGGCCGGAGCC
Right flanking sequence: Indices 42891 -- 43390
AGGGAGTTGGCCCTGAGGGCTGGCAAGACCTTGTCCCTGGGGACCAGGCTGGGCTCCTGGGTGCG
AGCCAGGCGCCTTTGAGAGTGTGTGAGACCCTGGCTGGGGTCCCTGTGGCACTGGCTGGGGCCCC
TGCGGGTGGGAGTGTTTGCTGGCAAGCGCAGAGCCCACCGCGGCTCCAGCGACTCCGCCCACGGC
TCCAGCAGCCACCGGGGCACCCAAACCACCGGGACCACCCGAGCCCGTGGGCGTGTGGGGCGCGT
GCTCGCCCTTCGCTTCCTCCTTGGGGTAGATCTTGAGTGGTTTCTGCCGGGTGGGCGACTTATGT
ACCGGACCCAGCCTCCGCAACGGGAGGTCCTCCTCGGCCTCGGCTCGCGCGGTGGCCATGATCTT
GTCGAGCTCGTCGGTGAGCAGGTGCTGGTTCTTCTTGTGGCCGCGGCGAGGCGAGAACGACTCGC
CCAGCGGGGTTTTGCGGTGGCCCGGCTCGTCGAGCTCGATTGCCA
Found at i:43990 original size:16 final size:16
Alignment explanation
Indices: 43948--44043 Score: 165
Period size: 16 Copynumber: 5.9 Consensus size: 16
43938 CGGGAGAGGA
43948 GGAGAAGTAGATGGAG
1 GGAGAAGTAGATGGAG
*
43964 GGAAAAAGTAGATGGAG
1 GG-AGAAGTAGATGGAG
*
43981 GGAGAAGTAGGTGGAG
1 GGAGAAGTAGATGGAG
43997 GGAGAAGTAGATGGAG
1 GGAGAAGTAGATGGAG
44013 GGAGAAGTAGATGGAG
1 GGAGAAGTAGATGGAG
44029 GGAGAAGTAGATGGA
1 GGAGAAGTAGATGGA
44044 AGAGGGGAAA
Statistics
Matches: 75, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
16 60 0.80
17 15 0.20
ACGTcount: A:0.39, C:0.00, G:0.49, T:0.12
Consensus pattern (16 bp):
GGAGAAGTAGATGGAG
Left flanking sequence: Indices 43448 -- 43947
GAACGGTGCCGCTGACCGAGGTGCTGTACGAGTAGTCCGCGTCCCGGGTGTCCTGGTGGCCCCTC
AGCATGGGCAAGCTCTGGGGGCCCACGAGCGACAGGGCCTCGGAGCCTGCGTCCAGACGCACCAG
TTTCAGCGGCAGCAAGTTCTTGGGCACCACCACCGAGATGGCCATGTCGTCCACCACGTCCACTT
TGCCCAGATACTCGCTGTAGTTGGACATGTACAGCTGGACCTTGCGGGCGGCGAACTGGGACCGT
GGCTGCGAGTGCGACGAGCGGGCCTCCGGGTCGTCGTAGCTGTCGTCGTCGTAGGGCGACGAGTG
GCTGGTGCCCGAGTGGTGGCCAGGGGGTACGGGGTTGCCCTGGTCCATGGTGATGCAGGTAATTT
CCCCTGAATGCGACTTGGAGACGGTTTTTGTAAGATTTTGCCGGGAGAGCTCGGTGTTTATGTTT
GTCCCGATTGGGAAGAGTCAGCCGTTGGCGAGGAACGGGAGAGGA
Right flanking sequence: Indices 44044 -- 44543
AGAGGGGAAAGGAGACGGGAAGTGGTGGTGGTGGCAAGGGTGGGTGGGGACGGGGCTTGGGAGCA
CGTGATGCGGTGGTGGGTGGATCAACGCGCGGTCCCGAAATAGCAGCAGCGCGCAGCTGATAAAG
ATTAGGGCGGAAGAAGGCACAAGCAGAGGGTGTAAACACGCGGGGGTACAGTGGAGGTGGCATTG
GGTAGAGGTCGGTGGTATGTAATGGTATGATTGGTACGGTTGGTACGATTTGTACGATTGGTACT
ATCAGAAACACTACTTAGTTTACTGGAGTTTCTTCCTGGTATTCTTCGTTACCAGTCTCTGGCTC
ACGTCCTATCCTTCCAGCCTACGAGGTCGTAAACACGAAAACAGTAGTAAACACCGAGTGGTATC
CCCACAACCACACCCCCACCCTGCAACTCTACACAATTCCCGTGGTCCCAACCCACTCTGCACAT
ATTTTTCCGAGCCACCTTCGTTCATCTCGCACCATGTCATGGGCT
Found at i:44281 original size:9 final size:9
Alignment explanation
Indices: 44261--44302 Score: 57
Period size: 9 Copynumber: 4.7 Consensus size: 9
44251 TGGTATGTAA
*
44261 TGGTATGAT
1 TGGTACGAT
*
44270 TGGTACGGT
1 TGGTACGAT
44279 TGGTACGAT
1 TGGTACGAT
*
44288 TTGTACGAT
1 TGGTACGAT
44297 TGGTAC
1 TGGTAC
44303 TATCAGAAAC
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
9 28 1.00
ACGTcount: A:0.19, C:0.10, G:0.33, T:0.38
Consensus pattern (9 bp):
TGGTACGAT
Left flanking sequence: Indices 43761 -- 44260
GGGCGACGAGTGGCTGGTGCCCGAGTGGTGGCCAGGGGGTACGGGGTTGCCCTGGTCCATGGTGA
TGCAGGTAATTTCCCCTGAATGCGACTTGGAGACGGTTTTTGTAAGATTTTGCCGGGAGAGCTCG
GTGTTTATGTTTGTCCCGATTGGGAAGAGTCAGCCGTTGGCGAGGAACGGGAGAGGAGGAGAAGT
AGATGGAGGGAAAAAGTAGATGGAGGGAGAAGTAGGTGGAGGGAGAAGTAGATGGAGGGAGAAGT
AGATGGAGGGAGAAGTAGATGGAAGAGGGGAAAGGAGACGGGAAGTGGTGGTGGTGGCAAGGGTG
GGTGGGGACGGGGCTTGGGAGCACGTGATGCGGTGGTGGGTGGATCAACGCGCGGTCCCGAAATA
GCAGCAGCGCGCAGCTGATAAAGATTAGGGCGGAAGAAGGCACAAGCAGAGGGTGTAAACACGCG
GGGGTACAGTGGAGGTGGCATTGGGTAGAGGTCGGTGGTATGTAA
Right flanking sequence: Indices 44303 -- 44802
TATCAGAAACACTACTTAGTTTACTGGAGTTTCTTCCTGGTATTCTTCGTTACCAGTCTCTGGCT
CACGTCCTATCCTTCCAGCCTACGAGGTCGTAAACACGAAAACAGTAGTAAACACCGAGTGGTAT
CCCCACAACCACACCCCCACCCTGCAACTCTACACAATTCCCGTGGTCCCAACCCACTCTGCACA
TATTTTTCCGAGCCACCTTCGTTCATCTCGCACCATGTCATGGGCTACTTCACGCGGGCCCCGTT
CAACTACGAGCTCTTCTCCAAACGAATAGCCAGGTTCAAGAACCAGTACCGCCGCCACACCCCGC
CCAAACCCCATGTGTACGACTTGATTGCCGCCAGCCGCCGGCTAGAGACCGCATCGCTCCACCAC
CACCCGCACCAGGCCCAGCCCATCGAGCCCCGCCAGCACCGGCTCGCGTTCCTCGAGATCGAGAC
GCTACCGACAAAGCTGGTCATCGAGGACACCCTCTGGCGCCTCCT
Found at i:45663 original size:14 final size:14
Alignment explanation
Indices: 45644--45687 Score: 79
Period size: 14 Copynumber: 3.1 Consensus size: 14
45634 GAAGGGGGTT
*
45644 GTAAAGAAGGATGG
1 GTAAAGAAGGATAG
45658 GTAAAGAAGGATAG
1 GTAAAGAAGGATAG
45672 GTAAAGAAGGATAG
1 GTAAAGAAGGATAG
45686 GT
1 GT
45688 TGTAAAGAGG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
14 29 1.00
ACGTcount: A:0.45, C:0.00, G:0.39, T:0.16
Consensus pattern (14 bp):
GTAAAGAAGGATAG
Left flanking sequence: Indices 45144 -- 45643
GGGAGCTCACCCAGGTGCCCCTCATGGTGTGGGTGGGGCTTGATGCGGTGCTCGCGGGTCCCATT
GCCTACTACTGGTTCCGGATGTGGAGCGTGCCCCTGGTGGGCCGGGTGAGCTGGCGCAACCTGAA
CCTGGTGCTCCGCAACTACGTGCACCGCCACGAGCTCTTGGCCATCAACAAGATCCTAGTGCACT
ACGAGGAGCACCACGAGGTCAACATCAGCAACTACCACACGTCGCAGGTGCGCACCCACCAGGCC
CAGGAGGTGCACGAGGTGCACGTCGAGGACAATCTCCCCCAGGTGCTCGACGCCAATCCCCCCGT
GCTGCGGTTGTTTCGCAGCGAGGTGTACCGGAGACGCATGGTGATCAACGATGTGCCGCAGGAGC
TCATGTTTGTTGAGTTCTGGCTCAACCACGGCGAGGGGTTTGAGTGGGTGGAGCCCGACCAGGAC
CCGTCGGAGTTGATCAAGTTTAAGATCAGCACGGAGAAGGGGGTT
Right flanking sequence: Indices 45688 -- 46187
TGTAAAGAGGGATAGGTTGTAAAGCAGGACAGGTTATAGATAAGGGTTAAACGGTGGAAGGAGAG
AAGACAAGTGGAAGGAGAGAAAATAGGTTATAGATAGAGAAGGTGGAGAGCAATTGATTGGTATA
GGGAGATGTAGAGCTCTAACCCGCGATTTTGATGGATTGAAGTGAGTTGAAAAGTAACTAGAGGA
TGGTGGGAGATAGTACTAGTGTTATTCCTTCGCACTACATGTGCCTACCAGATCCAGTACAATTC
TCAAACGCGTTCAAACGCGTCACCACAACACGCGTAGGGAACCTGGAAAGGCCACACCAGGTACA
CCATCGTATACACAGACAACCAAACTAACCATAGAACCTAAAGAGTTACCAACAATCGACCAACC
CACTCCCCATTAACCCCAAGTGCTCTTTTCTTCCCCATCTCTTCGCGCACTTCGCGTTGTTTACC
TCACGTGTCCACCATGTTCGACCCACTACCACAGGAGCTCGACAC
Found at i:45694 original size:17 final size:17
Alignment explanation
Indices: 45640--45722 Score: 97
Period size: 17 Copynumber: 5.2 Consensus size: 17
45630 CGGAGAAGGG
45640 GGTTGTAAAGAAGGAT-
1 GGTTGTAAAGAAGGATA
45656 GG--GTAAAGAAGGATA
1 GGTTGTAAAGAAGGATA
45671 -G--GTAAAGAAGGATA
1 GGTTGTAAAGAAGGATA
*
45685 GGTTGTAAAGAGGGATA
1 GGTTGTAAAGAAGGATA
* *
45702 GGTTGTAAAGCAGGACA
1 GGTTGTAAAGAAGGATA
45719 GGTT
1 GGTT
45723 ATAGATAAGG
Statistics
Matches: 59, Mismatches: 4, Indels: 7
0.84 0.06 0.10
Matches are distributed among these distances:
14 26 0.44
15 1 0.02
16 2 0.03
17 30 0.51
ACGTcount: A:0.39, C:0.02, G:0.39, T:0.20
Consensus pattern (17 bp):
GGTTGTAAAGAAGGATA
Left flanking sequence: Indices 45140 -- 45639
GCGTGGGAGCTCACCCAGGTGCCCCTCATGGTGTGGGTGGGGCTTGATGCGGTGCTCGCGGGTCC
CATTGCCTACTACTGGTTCCGGATGTGGAGCGTGCCCCTGGTGGGCCGGGTGAGCTGGCGCAACC
TGAACCTGGTGCTCCGCAACTACGTGCACCGCCACGAGCTCTTGGCCATCAACAAGATCCTAGTG
CACTACGAGGAGCACCACGAGGTCAACATCAGCAACTACCACACGTCGCAGGTGCGCACCCACCA
GGCCCAGGAGGTGCACGAGGTGCACGTCGAGGACAATCTCCCCCAGGTGCTCGACGCCAATCCCC
CCGTGCTGCGGTTGTTTCGCAGCGAGGTGTACCGGAGACGCATGGTGATCAACGATGTGCCGCAG
GAGCTCATGTTTGTTGAGTTCTGGCTCAACCACGGCGAGGGGTTTGAGTGGGTGGAGCCCGACCA
GGACCCGTCGGAGTTGATCAAGTTTAAGATCAGCACGGAGAAGGG
Right flanking sequence: Indices 45723 -- 46222
ATAGATAAGGGTTAAACGGTGGAAGGAGAGAAGACAAGTGGAAGGAGAGAAAATAGGTTATAGAT
AGAGAAGGTGGAGAGCAATTGATTGGTATAGGGAGATGTAGAGCTCTAACCCGCGATTTTGATGG
ATTGAAGTGAGTTGAAAAGTAACTAGAGGATGGTGGGAGATAGTACTAGTGTTATTCCTTCGCAC
TACATGTGCCTACCAGATCCAGTACAATTCTCAAACGCGTTCAAACGCGTCACCACAACACGCGT
AGGGAACCTGGAAAGGCCACACCAGGTACACCATCGTATACACAGACAACCAAACTAACCATAGA
ACCTAAAGAGTTACCAACAATCGACCAACCCACTCCCCATTAACCCCAAGTGCTCTTTTCTTCCC
CATCTCTTCGCGCACTTCGCGTTGTTTACCTCACGTGTCCACCATGTTCGACCCACTACCACAGG
AGCTCGACACGGTGCTCGCCCTCGGGTTCCGCGACCTGCTTTTGT
Found at i:45701 original size:31 final size:28
Alignment explanation
Indices: 45644--45704 Score: 86
Period size: 31 Copynumber: 2.1 Consensus size: 28
45634 GAAGGGGGTT
45644 GTAAAGAAGGATGGGTAAAGAAGGATAG
1 GTAAAGAAGGATGGGTAAAGAAGGATAG
*
45672 GTAAAGAAGGATAGGTTGTAAAGAGGGATAG
1 GTAAAGAAGGAT-GG--GTAAAGAAGGATAG
45703 GT
1 GT
45705 TGTAAAGCAG
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
28 12 0.41
29 2 0.07
31 15 0.52
ACGTcount: A:0.43, C:0.00, G:0.39, T:0.18
Consensus pattern (28 bp):
GTAAAGAAGGATGGGTAAAGAAGGATAG
Left flanking sequence: Indices 45144 -- 45643
GGGAGCTCACCCAGGTGCCCCTCATGGTGTGGGTGGGGCTTGATGCGGTGCTCGCGGGTCCCATT
GCCTACTACTGGTTCCGGATGTGGAGCGTGCCCCTGGTGGGCCGGGTGAGCTGGCGCAACCTGAA
CCTGGTGCTCCGCAACTACGTGCACCGCCACGAGCTCTTGGCCATCAACAAGATCCTAGTGCACT
ACGAGGAGCACCACGAGGTCAACATCAGCAACTACCACACGTCGCAGGTGCGCACCCACCAGGCC
CAGGAGGTGCACGAGGTGCACGTCGAGGACAATCTCCCCCAGGTGCTCGACGCCAATCCCCCCGT
GCTGCGGTTGTTTCGCAGCGAGGTGTACCGGAGACGCATGGTGATCAACGATGTGCCGCAGGAGC
TCATGTTTGTTGAGTTCTGGCTCAACCACGGCGAGGGGTTTGAGTGGGTGGAGCCCGACCAGGAC
CCGTCGGAGTTGATCAAGTTTAAGATCAGCACGGAGAAGGGGGTT
Right flanking sequence: Indices 45705 -- 46204
TGTAAAGCAGGACAGGTTATAGATAAGGGTTAAACGGTGGAAGGAGAGAAGACAAGTGGAAGGAG
AGAAAATAGGTTATAGATAGAGAAGGTGGAGAGCAATTGATTGGTATAGGGAGATGTAGAGCTCT
AACCCGCGATTTTGATGGATTGAAGTGAGTTGAAAAGTAACTAGAGGATGGTGGGAGATAGTACT
AGTGTTATTCCTTCGCACTACATGTGCCTACCAGATCCAGTACAATTCTCAAACGCGTTCAAACG
CGTCACCACAACACGCGTAGGGAACCTGGAAAGGCCACACCAGGTACACCATCGTATACACAGAC
AACCAAACTAACCATAGAACCTAAAGAGTTACCAACAATCGACCAACCCACTCCCCATTAACCCC
AAGTGCTCTTTTCTTCCCCATCTCTTCGCGCACTTCGCGTTGTTTACCTCACGTGTCCACCATGT
TCGACCCACTACCACAGGAGCTCGACACGGTGCTCGCCCTCGGGT
Found at i:47908 original size:27 final size:27
Alignment explanation
Indices: 47878--47983 Score: 104
Period size: 27 Copynumber: 3.9 Consensus size: 27
47868 GGAGGACGAG
*
47878 GAGGAGGGTGAGGAAGCAGGGGAAGCT
1 GAGGAGGGTGAGGAAGCAGAGGAAGCT
* * *
47905 GAGGAGGGTGGGGAAGCAGAGGAGGGT
1 GAGGAGGGTGAGGAAGCAGAGGAAGCT
* ** * ** *
47932 GAGGAAGCAGAGGAGGGTGAGGAAGCA
1 GAGGAGGGTGAGGAAGCAGAGGAAGCT
*
47959 GAGGAGGGTGAGGAAGCAGAAGAAG
1 GAGGAGGGTGAGGAAGCAGAGGAAG
47984 AAGCTAAAGG
Statistics
Matches: 58, Mismatches: 21, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
27 58 1.00
ACGTcount: A:0.33, C:0.06, G:0.56, T:0.06
Consensus pattern (27 bp):
GAGGAGGGTGAGGAAGCAGAGGAAGCT
Left flanking sequence: Indices 47378 -- 47877
TCTCGGGCCAGAACCAGGGCCGCGGCATTGTTGCGACCCGCGACATTGGCCAGGACGAGGTGTTG
TTCACCATTCCGCGGGCAGCGGTGCTCAATGTGCAAACGTCGCAATTGGTGGAGAGCCGGCCGGA
GCTCAAGGAGGAGCTTTTGAGGCTCGACCAGTGGACGGCGCTCATCATTGTCATATTGTACGAGT
ACCAGGTGGAGGGCGACAAGCTGCGGTGGTGGCCGTATTTCCGCGTGTTGCCGTTTGACGAGCCT
GGGGTGGAGCTCAACCAGCTCATTATGTGGGAGGAGAGCGAGTTGGAGATGCTCAAGCCTCTGGG
GGTGTTGGAGCAGATTGGCCACGCCAAGGCGGACGAGTTGTTTGAGAAGGTGAAGGGGAAGCTCG
CGGAGTTCAAGCTTGGGGTGGAGGTGGACAAGCCGTTGTTTCTGAAGGTGGCGACGACGATCATG
TCGTACTCCTTTGACGTGGACTTGCCGGAGGGAGAGGAGGACGAG
Right flanking sequence: Indices 47984 -- 48483
AAGCTAAAGGTGACGGTGACGGGGAGCACGACGAGTCCGACGCCCCCCAGATCCTCACCGATGGC
TACTTCAAGTCAATGGTCCCCCTCGCAGACACCCTCAACGCCGACACCGAGTTCCAGAACGCCCA
CCTCGAGTACAGCGAGGACTCCCTCCTCATGAAGACCACCAAGGCCATCAAGGCCGGCGAACAGG
TCTACAACACCTACTCCGACCACTCCAACGGCGAAATCTTGCGCCGCTACGGCTACGTCCAGCCC
CACGGGTCGCTGTTTGACGTGGCCGAGGTCACCATGCCCACCATCTCCCACCTCTTTGCCGGCTC
CATCACCAACGTCCCGGAGGTGTTGGCCCAGCTCCAGCAGATTGCCGAGAAAGAAGCCGAGGATA
ACGACGACGACGAAGACGTCCTCTTGGTGGCGCCGTCGTACGACTGCTTTGTCACCGGCGACGTC
GCCGTCGAGCTCATTTTGCTCGTGCAAATCCTCACCACCCTCGCG
Found at i:47917 original size:18 final size:18
Alignment explanation
Indices: 47898--47978 Score: 144
Period size: 18 Copynumber: 4.5 Consensus size: 18
47888 AGGAAGCAGG
* *
47898 GGAAGCTGAGGAGGGTGG
1 GGAAGCAGAGGAGGGTGA
47916 GGAAGCAGAGGAGGGTGA
1 GGAAGCAGAGGAGGGTGA
47934 GGAAGCAGAGGAGGGTGA
1 GGAAGCAGAGGAGGGTGA
47952 GGAAGCAGAGGAGGGTGA
1 GGAAGCAGAGGAGGGTGA
47970 GGAAGCAGA
1 GGAAGCAGA
47979 AGAAGAAGCT
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
18 61 1.00
ACGTcount: A:0.32, C:0.06, G:0.56, T:0.06
Consensus pattern (18 bp):
GGAAGCAGAGGAGGGTGA
Left flanking sequence: Indices 47398 -- 47897
CGCGGCATTGTTGCGACCCGCGACATTGGCCAGGACGAGGTGTTGTTCACCATTCCGCGGGCAGC
GGTGCTCAATGTGCAAACGTCGCAATTGGTGGAGAGCCGGCCGGAGCTCAAGGAGGAGCTTTTGA
GGCTCGACCAGTGGACGGCGCTCATCATTGTCATATTGTACGAGTACCAGGTGGAGGGCGACAAG
CTGCGGTGGTGGCCGTATTTCCGCGTGTTGCCGTTTGACGAGCCTGGGGTGGAGCTCAACCAGCT
CATTATGTGGGAGGAGAGCGAGTTGGAGATGCTCAAGCCTCTGGGGGTGTTGGAGCAGATTGGCC
ACGCCAAGGCGGACGAGTTGTTTGAGAAGGTGAAGGGGAAGCTCGCGGAGTTCAAGCTTGGGGTG
GAGGTGGACAAGCCGTTGTTTCTGAAGGTGGCGACGACGATCATGTCGTACTCCTTTGACGTGGA
CTTGCCGGAGGGAGAGGAGGACGAGGAGGAGGGTGAGGAAGCAGG
Right flanking sequence: Indices 47979 -- 48478
AGAAGAAGCTAAAGGTGACGGTGACGGGGAGCACGACGAGTCCGACGCCCCCCAGATCCTCACCG
ATGGCTACTTCAAGTCAATGGTCCCCCTCGCAGACACCCTCAACGCCGACACCGAGTTCCAGAAC
GCCCACCTCGAGTACAGCGAGGACTCCCTCCTCATGAAGACCACCAAGGCCATCAAGGCCGGCGA
ACAGGTCTACAACACCTACTCCGACCACTCCAACGGCGAAATCTTGCGCCGCTACGGCTACGTCC
AGCCCCACGGGTCGCTGTTTGACGTGGCCGAGGTCACCATGCCCACCATCTCCCACCTCTTTGCC
GGCTCCATCACCAACGTCCCGGAGGTGTTGGCCCAGCTCCAGCAGATTGCCGAGAAAGAAGCCGA
GGATAACGACGACGACGAAGACGTCCTCTTGGTGGCGCCGTCGTACGACTGCTTTGTCACCGGCG
ACGTCGCCGTCGAGCTCATTTTGCTCGTGCAAATCCTCACCACCC
Found at i:47927 original size:36 final size:36
Alignment explanation
Indices: 47887--47978 Score: 103
Period size: 36 Copynumber: 2.6 Consensus size: 36
47877 GGAGGAGGGT
* * *
47887 GAGGAAGCAGGGGAAGCTGAGGAGGGTGGGGAAGCA
1 GAGGAAGCAGAGGAAGCAGAGGAGGGTGAGGAAGCA
* **
47923 GAGGAGGGTGAGGAAGCAGAGGAGGGTGAGGAAGCA
1 GAGGAAGCAGAGGAAGCAGAGGAGGGTGAGGAAGCA
* **
47959 GAGGAGGGTGAGGAAGCAGA
1 GAGGAAGCAGAGGAAGCAGA
47979 AGAAGAAGCT
Statistics
Matches: 50, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
36 50 1.00
ACGTcount: A:0.33, C:0.07, G:0.55, T:0.05
Consensus pattern (36 bp):
GAGGAAGCAGAGGAAGCAGAGGAGGGTGAGGAAGCA
Left flanking sequence: Indices 47387 -- 47886
AGAACCAGGGCCGCGGCATTGTTGCGACCCGCGACATTGGCCAGGACGAGGTGTTGTTCACCATT
CCGCGGGCAGCGGTGCTCAATGTGCAAACGTCGCAATTGGTGGAGAGCCGGCCGGAGCTCAAGGA
GGAGCTTTTGAGGCTCGACCAGTGGACGGCGCTCATCATTGTCATATTGTACGAGTACCAGGTGG
AGGGCGACAAGCTGCGGTGGTGGCCGTATTTCCGCGTGTTGCCGTTTGACGAGCCTGGGGTGGAG
CTCAACCAGCTCATTATGTGGGAGGAGAGCGAGTTGGAGATGCTCAAGCCTCTGGGGGTGTTGGA
GCAGATTGGCCACGCCAAGGCGGACGAGTTGTTTGAGAAGGTGAAGGGGAAGCTCGCGGAGTTCA
AGCTTGGGGTGGAGGTGGACAAGCCGTTGTTTCTGAAGGTGGCGACGACGATCATGTCGTACTCC
TTTGACGTGGACTTGCCGGAGGGAGAGGAGGACGAGGAGGAGGGT
Right flanking sequence: Indices 47979 -- 48478
AGAAGAAGCTAAAGGTGACGGTGACGGGGAGCACGACGAGTCCGACGCCCCCCAGATCCTCACCG
ATGGCTACTTCAAGTCAATGGTCCCCCTCGCAGACACCCTCAACGCCGACACCGAGTTCCAGAAC
GCCCACCTCGAGTACAGCGAGGACTCCCTCCTCATGAAGACCACCAAGGCCATCAAGGCCGGCGA
ACAGGTCTACAACACCTACTCCGACCACTCCAACGGCGAAATCTTGCGCCGCTACGGCTACGTCC
AGCCCCACGGGTCGCTGTTTGACGTGGCCGAGGTCACCATGCCCACCATCTCCCACCTCTTTGCC
GGCTCCATCACCAACGTCCCGGAGGTGTTGGCCCAGCTCCAGCAGATTGCCGAGAAAGAAGCCGA
GGATAACGACGACGACGAAGACGTCCTCTTGGTGGCGCCGTCGTACGACTGCTTTGTCACCGGCG
ACGTCGCCGTCGAGCTCATTTTGCTCGTGCAAATCCTCACCACCC
Found at i:47944 original size:9 final size:9
Alignment explanation
Indices: 47887--47983 Score: 50
Period size: 9 Copynumber: 10.8 Consensus size: 9
47877 GGAGGAGGGT
47887 GAGGAAGCA
1 GAGGAAGCA
* *
47896 GGGGAAGCT
1 GAGGAAGCA
* **
47905 GAGGAGGGT
1 GAGGAAGCA
*
47914 GGGGAAGCA
1 GAGGAAGCA
* **
47923 GAGGAGGGT
1 GAGGAAGCA
47932 GAGGAAGCA
1 GAGGAAGCA
* **
47941 GAGGAGGGT
1 GAGGAAGCA
47950 GAGGAAGCA
1 GAGGAAGCA
* **
47959 GAGGAGGGT
1 GAGGAAGCA
47968 GAGGAAGCA
1 GAGGAAGCA
*
47977 GAAGAAG
1 GAGGAAG
47984 AAGCTAAAGG
Statistics
Matches: 59, Mismatches: 29, Indels: 0
0.67 0.33 0.00
Matches are distributed among these distances:
9 59 1.00
ACGTcount: A:0.34, C:0.06, G:0.55, T:0.05
Consensus pattern (9 bp):
GAGGAAGCA
Left flanking sequence: Indices 47387 -- 47886
AGAACCAGGGCCGCGGCATTGTTGCGACCCGCGACATTGGCCAGGACGAGGTGTTGTTCACCATT
CCGCGGGCAGCGGTGCTCAATGTGCAAACGTCGCAATTGGTGGAGAGCCGGCCGGAGCTCAAGGA
GGAGCTTTTGAGGCTCGACCAGTGGACGGCGCTCATCATTGTCATATTGTACGAGTACCAGGTGG
AGGGCGACAAGCTGCGGTGGTGGCCGTATTTCCGCGTGTTGCCGTTTGACGAGCCTGGGGTGGAG
CTCAACCAGCTCATTATGTGGGAGGAGAGCGAGTTGGAGATGCTCAAGCCTCTGGGGGTGTTGGA
GCAGATTGGCCACGCCAAGGCGGACGAGTTGTTTGAGAAGGTGAAGGGGAAGCTCGCGGAGTTCA
AGCTTGGGGTGGAGGTGGACAAGCCGTTGTTTCTGAAGGTGGCGACGACGATCATGTCGTACTCC
TTTGACGTGGACTTGCCGGAGGGAGAGGAGGACGAGGAGGAGGGT
Right flanking sequence: Indices 47984 -- 48483
AAGCTAAAGGTGACGGTGACGGGGAGCACGACGAGTCCGACGCCCCCCAGATCCTCACCGATGGC
TACTTCAAGTCAATGGTCCCCCTCGCAGACACCCTCAACGCCGACACCGAGTTCCAGAACGCCCA
CCTCGAGTACAGCGAGGACTCCCTCCTCATGAAGACCACCAAGGCCATCAAGGCCGGCGAACAGG
TCTACAACACCTACTCCGACCACTCCAACGGCGAAATCTTGCGCCGCTACGGCTACGTCCAGCCC
CACGGGTCGCTGTTTGACGTGGCCGAGGTCACCATGCCCACCATCTCCCACCTCTTTGCCGGCTC
CATCACCAACGTCCCGGAGGTGTTGGCCCAGCTCCAGCAGATTGCCGAGAAAGAAGCCGAGGATA
ACGACGACGACGAAGACGTCCTCTTGGTGGCGCCGTCGTACGACTGCTTTGTCACCGGCGACGTC
GCCGTCGAGCTCATTTTGCTCGTGCAAATCCTCACCACCCTCGCG
Found at i:53736 original size:27 final size:27
Alignment explanation
Indices: 53706--53760 Score: 101
Period size: 27 Copynumber: 2.0 Consensus size: 27
53696 CCCCAAGAAG
*
53706 GAGAAGAAGGAGGCTGCTCCCAAGGCT
1 GAGAAGAAGGAGGCTGCCCCCAAGGCT
53733 GAGAAGAAGGAGGCTGCCCCCAAGGCT
1 GAGAAGAAGGAGGCTGCCCCCAAGGCT
53760 G
1 G
53761 CCGCCGCCCC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.29, C:0.24, G:0.38, T:0.09
Consensus pattern (27 bp):
GAGAAGAAGGAGGCTGCCCCCAAGGCT
Left flanking sequence: Indices 53206 -- 53705
TCATTGGCGAGAAGGGCTACAAGTTGACCGAGTTCCAGGCCGTGTACGAGTACCTCTTGACCTTC
ATCAAGGAGGACATCTCCGTCCTTGTTGGTAAGAACGCCAAGCAGGCCGCCCAGGTCACCTCCAC
CATCTCGTTGGCTGCCACCGACATCCTGATGGCGTTGTTCCCTGCTCTCTTCATGGTCAACGGCA
GAATGCCCTACAACAAGAAGCAGTACGACGAGAAGATCGCCAAGTTCAACAAGATCGCCGACGTT
TTGGAGGCCAGAACCAAGGAGTACACCTTCCTTGCCACCGAGCGTTGCACTTTCGGTGACATCTT
CATGGCCATCACCTTGGCTCCCTTCTTGTCGACCATCTTGGCCGCTCCCTTCGCCAAGGCTCACC
CCAACTTGATGAGATGGTTCAACACTGTCAAGACCCACCCCATCATCGGTGGCACCTTGGACAAC
ACCCCCATCCCTGCCCAGCCCTTGACCTTCACTCCCCCCAAGAAG
Right flanking sequence: Indices 53761 -- 54260
CCGCCGCCCCCGCTGAGCCCGCTGCTGCCCCCAAGCCCAAGCACCCCCTTGAGCTTCTCGGCAAG
CCCTCGACCCCCATTGACGAGTGGAAGAGATTCTACTCCAACGAGGAGACCCGCGAGACCGCCAT
CCCCTTCTTCTGGGACAAGATGTACAACCCCGAGGAGTGGTCCTTGTGGAAGGTTGACTACAAGT
ACAACGACGAGTTGACCTTGACCTTCATGTCCAACAACTTGGTTGGTGGTTTCTTCAACCGTTTG
TCTGCTTCCACCAAGTACATGTTCGGTTGCATGGTTGTCTACGGTGAGAACAACAACAACGGTAT
CACCGGTGCCTTCCTCGTCCGTGGCCAGGACTACGAGCCTGCCTTCGACGTTGCCCCTGACTGGG
AGTCTTACTCTTACTCCAAGTTGGACGCCTCCAAGCCCGAGGACAAGGAGTTCTTCGAGAACATG
CTTGCCTGGGACAAGCCCGTTGTTATCGACGGCAAGTCCATTGAG
Found at i:55753 original size:100 final size:101
Alignment explanation
Indices: 55553--55952 Score: 344
Period size: 99 Copynumber: 4.0 Consensus size: 101
55543 GGAGTTGAGG
* * * * *
55553 TATCACGAGATTAACTAAAT-CATCTCTAGCTAGTGGGGTTTT-CTCTAGCCCAG--T--CCGTG
1 TATCACGAGATTAACCATATGTATCTCTAGCTA--AGGGTTTTCCTCTAGCTCAGTCTAACCGTG
* *
55612 GACCACTAGAAACTAACAAGTTCTCGATTCCATTGAGTT
64 GACCACTAGAAAC-AACAAATTCTCGATCCCATTGAGTT
* *
55651 TATCACGAGATTAACCATATGTGTCTCTAGCT-AGGGTTTTTCCTCTAGCTTAGTCTAACCGTGG
1 TATCACGAGATTAACCATATGTATCTCTAGCTAAGGG-TTTTCCTCTAGCTCAGTCTAACCGTGG
*
55715 ACCACTAGAAAC-ACAAATTCTCGATTCCATTGAGTT
65 ACCACTAGAAACAACAAATTCTCGATCCCATTGAGTT
* * * * *
55751 TATCACGAGATTAACCAAAT-AATCTCTAGCTAATGGG-TTTCCTCCAGCTCAGGCTAACCGTAG
1 TATCACGAGATTAACCATATGTATCTCTAGCTAA-GGGTTTTCCTCTAGCTCAGTCTAACCGTGG
* * * *
55814 ATCACTAAAAACCAGCACACATTCTCGA-CCTCATTG-GTGG
65 ACCACTAGAAA-CA--ACAAATTCTCGATCC-CATTGAGT-T
* * *
55854 TATCACGAGATT-ACTC-TA-GTTATCTCCAGCTAAAGGGTTTTCCTTTAGCCCAGTCTAACCGT
1 TATCACGAGATTAAC-CATATG-TATCTCTAGCT-AAGGGTTTTCCTCTAGCTCAGTCTAACCGT
* * *
55916 GGATCGCTAGAAACTAACACATTCTCGATCCCATTGA
63 GGACCACTAGAAAC-AACAAATTCTCGATCCCATTGA
55953 AGATATCACC
Statistics
Matches: 249, Mismatches: 30, Indels: 41
0.78 0.09 0.13
Matches are distributed among these distances:
96 3 0.01
97 4 0.02
98 27 0.11
99 49 0.20
100 45 0.18
101 3 0.01
102 41 0.16
103 44 0.18
104 33 0.13
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (101 bp):
TATCACGAGATTAACCATATGTATCTCTAGCTAAGGGTTTTCCTCTAGCTCAGTCTAACCGTGGA
CCACTAGAAACAACAAATTCTCGATCCCATTGAGTT
Left flanking sequence: Indices 55053 -- 55552
GCGACAAGGTGGTGTACATGGTGCAGTTCTTGTAGGCCTTGCCGGGAAGACGACCGGCGTTCTCC
AAGCACAGGGTCTCCCCGTGCAAGGTGGCCGAGCTCTTCTGGATGCGCTCGTTGTGGCCCCGGCC
CAAAACGGTACCGTCCTCGGAAACCAACGCGGCACCGATGGGGATACCACCCTCGGCGTAACTCT
TTCTCGCCTCCTCGAGCGCGATCTCCAAACCCTTCTTATCGTCGAACGGCATTGTGTAGTGTGGA
GAGAATTGTTCGCGCTTCAAGCGATGCGCATCGGGACCGGGTCAGCTGCCGTTTGTGGACTCGGT
TACTGCCGGTCCGAACAAAGACATGCACGGAACATCCAGGGACGGAGATGGGACGGAGATCTACA
CTATTTAGACTTGGCGGAGGTGTGGCTTTTCTTGGCGTGGGCTGCACAGGTGGATGACGTACGTG
TGCAGACACAGGCCATTGTGGGGCCGATCGGGGAGGGAGTTGAGG
Right flanking sequence: Indices 55953 -- 56452
AGATATCACCAGATGAACATTTTTGTCTCTACCTAGGTTTCTCGCCCAGTCTAACCGTGGATAGA
TTCTATCGTCTTTTCAGTAGTCGCCACTGGTACATCTATCGCTATTACTCTATAATCTCACTATA
CTCACGTGTACAAGTGTATGTCCCCAATACGGTCAATGGTCACAATCATGTTGTACGGCACGGTG
GTGATGCACACCCCCGTGATGATGTCGTGGTTGTTGCGGAGCCGCTCCAGGTCCGCCGCAAGCAC
GTACTCCTTGAGCAACCCCTGGCCCTTGGCGGGGGTGTTCTTGAGCAACGACCCGTCGTTGTTCA
CCACCACCGAGTCGTCCACGGACTCCAAGTTCCAGCACATCACCGTCTTGCCCACCAGCACCACC
ATGTGGTTGTCCACCACCTCGGCCGCACCGACAGTGGGCCCGTCCGCAGCCGCGGGCTCCGTCGC
CAACGCGTCAAACACCTCGGCGAGGTTGACCCGCGCAATGTCCGT
Found at i:60313 original size:9 final size:9
Alignment explanation
Indices: 60301--60354 Score: 74
Period size: 9 Copynumber: 6.0 Consensus size: 9
60291 GGAGATGGGA
*
60301 GAAAAGAAG
1 GAAAAGGAG
60310 GAAAAGGA-
1 GAAAAGGAG
*
60318 GAGGAAGGAG
1 GA-AAAGGAG
60328 GAAAAGGAG
1 GAAAAGGAG
60337 GAAAAGGAG
1 GAAAAGGAG
60346 GAAAAGGAG
1 GAAAAGGAG
60355 AGGAAAGAAC
Statistics
Matches: 40, Mismatches: 3, Indels: 4
0.85 0.06 0.09
Matches are distributed among these distances:
8 2 0.05
9 36 0.90
10 2 0.05
ACGTcount: A:0.56, C:0.00, G:0.44, T:0.00
Consensus pattern (9 bp):
GAAAAGGAG
Left flanking sequence: Indices 59801 -- 60300
GAGCTGCTGGTGGAGGTCGCGGACAATCGAGAGCATCTGGTAGACCACAAACAACTTCTCCACCG
GCTCCATGAACGGGCGCAACAGCAACCGGTCGTAGAGGTTGGTGCCCACCCACTGGCGTTGGAGA
TACCCGGCGCGGTCGGTCTCGATGAGCCGGCTCCACCCCAAGCAGTGGGGAAAGTGGCTGAGGAG
CTGCAGCTGCTTGGCACAGAGCTCGGTGACTGTCTGGAGATTGACGGCCACGCCTGTTCCGAGCG
GCTTGATGAAGATCTTGAGCACCACCTCCCCGTCGCGGTCGGAGGCCTTGACGGTCTTGAGGAAC
CGGGAATTGTTGATTGTTTCGGTGTAGTGGAGTCCGTCGAGGACGTCCACGTACGACAGAATGGC
CACCGTGGGCGCCAGGGGCGCGAGGAGCGATAGGCGGGGACCCATGGGTAGGCTGGCGAGGTGTA
TGCGTGGTGCGGCTTATGGCGGGGAGTGAGAAGAGGGAGATGGGA
Right flanking sequence: Indices 60355 -- 60854
AGGAAAGAACGAGGAGCAGGGATTGAATATGACCGTGTGGCCATTGAGTGCGAGGCGGGTGAGGT
GGGCCAGAAAGCGGGTTTGGCTGGTAGTGGGGTGTAGTTAAGGAGCAGGGTGACTGTGGTGTGTA
TTTTGTGTAACTTGGTGGGTAATTGGGTGTAATTGGGTGTAATTGGTGTGCAATTAGTGTGTTAT
TTGTGGGTATATTCGTGTGTCGAGTCTACAGTCCTACCGTTTGTCTACCACCCTGGTCACTCATC
TAGCACGGTGTCCCGGGTGCATTTGCCTCCTGCGCGCGCACACGGCAACCATGAGCCAGGCGCTT
CCCATAGACATCCACGAGGACGGCGAGTTGGGCTCGTATCTTCGCGGGCTCAAGGCACGTGACCA
CGAGGAGGACGAGCTCGAGGACGACTACGTGGCTGGCGCGGGCGCGGCCACCCACGCCCCCGTGC
CCGCGTCGCGGTTTGCCCAGGCGGTGGTGGCGAAGCTCCAGGAGG
Found at i:60352 original size:27 final size:27
Alignment explanation
Indices: 60301--60363 Score: 74
Period size: 27 Copynumber: 2.3 Consensus size: 27
60291 GGAGATGGGA
*
60301 GAAAAGAAGGAAAAGGAGAGGAAGGAG
1 GAAAAGAAGGAAAAGGAGAGAAAGGAG
*
60328 GAAAAGGAGGAAAAGGAG-GAAAAGGAG
1 GAAAAGAAGGAAAAGGAGAG-AAAGGAG
*
60355 AGGAAAGAA
1 -GAAAAGAA
60364 CGAGGAGCAG
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
26 1 0.03
27 23 0.77
28 6 0.20
ACGTcount: A:0.57, C:0.00, G:0.43, T:0.00
Consensus pattern (27 bp):
GAAAAGAAGGAAAAGGAGAGAAAGGAG
Left flanking sequence: Indices 59801 -- 60300
GAGCTGCTGGTGGAGGTCGCGGACAATCGAGAGCATCTGGTAGACCACAAACAACTTCTCCACCG
GCTCCATGAACGGGCGCAACAGCAACCGGTCGTAGAGGTTGGTGCCCACCCACTGGCGTTGGAGA
TACCCGGCGCGGTCGGTCTCGATGAGCCGGCTCCACCCCAAGCAGTGGGGAAAGTGGCTGAGGAG
CTGCAGCTGCTTGGCACAGAGCTCGGTGACTGTCTGGAGATTGACGGCCACGCCTGTTCCGAGCG
GCTTGATGAAGATCTTGAGCACCACCTCCCCGTCGCGGTCGGAGGCCTTGACGGTCTTGAGGAAC
CGGGAATTGTTGATTGTTTCGGTGTAGTGGAGTCCGTCGAGGACGTCCACGTACGACAGAATGGC
CACCGTGGGCGCCAGGGGCGCGAGGAGCGATAGGCGGGGACCCATGGGTAGGCTGGCGAGGTGTA
TGCGTGGTGCGGCTTATGGCGGGGAGTGAGAAGAGGGAGATGGGA
Right flanking sequence: Indices 60364 -- 60863
CGAGGAGCAGGGATTGAATATGACCGTGTGGCCATTGAGTGCGAGGCGGGTGAGGTGGGCCAGAA
AGCGGGTTTGGCTGGTAGTGGGGTGTAGTTAAGGAGCAGGGTGACTGTGGTGTGTATTTTGTGTA
ACTTGGTGGGTAATTGGGTGTAATTGGGTGTAATTGGTGTGCAATTAGTGTGTTATTTGTGGGTA
TATTCGTGTGTCGAGTCTACAGTCCTACCGTTTGTCTACCACCCTGGTCACTCATCTAGCACGGT
GTCCCGGGTGCATTTGCCTCCTGCGCGCGCACACGGCAACCATGAGCCAGGCGCTTCCCATAGAC
ATCCACGAGGACGGCGAGTTGGGCTCGTATCTTCGCGGGCTCAAGGCACGTGACCACGAGGAGGA
CGAGCTCGAGGACGACTACGTGGCTGGCGCGGGCGCGGCCACCCACGCCCCCGTGCCCGCGTCGC
GGTTTGCCCAGGCGGTGGTGGCGAAGCTCCAGGAGGTCAAGTTCC
Found at i:60518 original size:10 final size:10
Alignment explanation
Indices: 60489--60530 Score: 57
Period size: 10 Copynumber: 4.0 Consensus size: 10
60479 TGTGTATTTT
60489 GTGTAACTTGG
1 GTGTAA-TTGG
*
60500 TGGGTAATTGG
1 -GTGTAATTGG
60511 GTGTAATTGG
1 GTGTAATTGG
60521 GTGTAATTGG
1 GTGTAATTGG
60531 TGTGCAATTA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
10 19 0.68
11 4 0.14
12 5 0.18
ACGTcount: A:0.19, C:0.02, G:0.40, T:0.38
Consensus pattern (10 bp):
GTGTAATTGG
Left flanking sequence: Indices 59989 -- 60488
TGAGGAGCTGCAGCTGCTTGGCACAGAGCTCGGTGACTGTCTGGAGATTGACGGCCACGCCTGTT
CCGAGCGGCTTGATGAAGATCTTGAGCACCACCTCCCCGTCGCGGTCGGAGGCCTTGACGGTCTT
GAGGAACCGGGAATTGTTGATTGTTTCGGTGTAGTGGAGTCCGTCGAGGACGTCCACGTACGACA
GAATGGCCACCGTGGGCGCCAGGGGCGCGAGGAGCGATAGGCGGGGACCCATGGGTAGGCTGGCG
AGGTGTATGCGTGGTGCGGCTTATGGCGGGGAGTGAGAAGAGGGAGATGGGAGAAAAGAAGGAAA
AGGAGAGGAAGGAGGAAAAGGAGGAAAAGGAGGAAAAGGAGAGGAAAGAACGAGGAGCAGGGATT
GAATATGACCGTGTGGCCATTGAGTGCGAGGCGGGTGAGGTGGGCCAGAAAGCGGGTTTGGCTGG
TAGTGGGGTGTAGTTAAGGAGCAGGGTGACTGTGGTGTGTATTTT
Right flanking sequence: Indices 60531 -- 61030
TGTGCAATTAGTGTGTTATTTGTGGGTATATTCGTGTGTCGAGTCTACAGTCCTACCGTTTGTCT
ACCACCCTGGTCACTCATCTAGCACGGTGTCCCGGGTGCATTTGCCTCCTGCGCGCGCACACGGC
AACCATGAGCCAGGCGCTTCCCATAGACATCCACGAGGACGGCGAGTTGGGCTCGTATCTTCGCG
GGCTCAAGGCACGTGACCACGAGGAGGACGAGCTCGAGGACGACTACGTGGCTGGCGCGGGCGCG
GCCACCCACGCCCCCGTGCCCGCGTCGCGGTTTGCCCAGGCGGTGGTGGCGAAGCTCCAGGAGGT
CAAGTTCCAGGTCCAGACGGAGTCCGAGCGCGACCTCGACGGGATCGACATCCCCGTGCCCCACA
ACCCGAAGCAGTGGCGCCAGTTTGTGTTTGAGAACCAGCCGCCGCCGTTGGCGTGGTTTGTGCTG
GTGGTGGACCGGCCCACGGTCTTCAAGCTCCTCAACTACTTCACC
Found at i:60544 original size:20 final size:20
Alignment explanation
Indices: 60503--60544 Score: 50
Period size: 20 Copynumber: 2.1 Consensus size: 20
60493 AACTTGGTGG
* *
60503 GTAATTGGGTGTAATTGGGT
1 GTAATTGGGTGCAATTGAGT
60523 GTAATTGGTGTGCAATT-AGT
1 GTAATTGG-GTGCAATTGAGT
60543 GT
1 GT
60545 GTTATTTGTG
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
20 12 0.63
21 7 0.37
ACGTcount: A:0.21, C:0.02, G:0.36, T:0.40
Consensus pattern (20 bp):
GTAATTGGGTGCAATTGAGT
Left flanking sequence: Indices 60003 -- 60502
TGCTTGGCACAGAGCTCGGTGACTGTCTGGAGATTGACGGCCACGCCTGTTCCGAGCGGCTTGAT
GAAGATCTTGAGCACCACCTCCCCGTCGCGGTCGGAGGCCTTGACGGTCTTGAGGAACCGGGAAT
TGTTGATTGTTTCGGTGTAGTGGAGTCCGTCGAGGACGTCCACGTACGACAGAATGGCCACCGTG
GGCGCCAGGGGCGCGAGGAGCGATAGGCGGGGACCCATGGGTAGGCTGGCGAGGTGTATGCGTGG
TGCGGCTTATGGCGGGGAGTGAGAAGAGGGAGATGGGAGAAAAGAAGGAAAAGGAGAGGAAGGAG
GAAAAGGAGGAAAAGGAGGAAAAGGAGAGGAAAGAACGAGGAGCAGGGATTGAATATGACCGTGT
GGCCATTGAGTGCGAGGCGGGTGAGGTGGGCCAGAAAGCGGGTTTGGCTGGTAGTGGGGTGTAGT
TAAGGAGCAGGGTGACTGTGGTGTGTATTTTGTGTAACTTGGTGG
Right flanking sequence: Indices 60545 -- 61044
GTTATTTGTGGGTATATTCGTGTGTCGAGTCTACAGTCCTACCGTTTGTCTACCACCCTGGTCAC
TCATCTAGCACGGTGTCCCGGGTGCATTTGCCTCCTGCGCGCGCACACGGCAACCATGAGCCAGG
CGCTTCCCATAGACATCCACGAGGACGGCGAGTTGGGCTCGTATCTTCGCGGGCTCAAGGCACGT
GACCACGAGGAGGACGAGCTCGAGGACGACTACGTGGCTGGCGCGGGCGCGGCCACCCACGCCCC
CGTGCCCGCGTCGCGGTTTGCCCAGGCGGTGGTGGCGAAGCTCCAGGAGGTCAAGTTCCAGGTCC
AGACGGAGTCCGAGCGCGACCTCGACGGGATCGACATCCCCGTGCCCCACAACCCGAAGCAGTGG
CGCCAGTTTGTGTTTGAGAACCAGCCGCCGCCGTTGGCGTGGTTTGTGCTGGTGGTGGACCGGCC
CACGGTCTTCAAGCTCCTCAACTACTTCACCAAGTGGTTGTGTAG
Found at i:61365 original size:15 final size:15
Alignment explanation
Indices: 61289--61444 Score: 161
Period size: 15 Copynumber: 9.9 Consensus size: 15
61279 TACGGGCCTG
*
61289 AGAACAAGGATCCAG-
1 AGAAC-AGGAACCAGA
61304 AGAATCAGGGAACCAGA
1 AGAA-CA-GGAACCAGA
* *
61321 GGAACAAGAAACCAGA
1 AGAAC-AGGAACCAGA
**
61337 AGAATTGTGGAACCAGA
1 AGAA--CAGGAACCAGA
61354 AGAACAGGAACCAGA
1 AGAACAGGAACCAGA
61369 AGAACAGGAACCAGA
1 AGAACAGGAACCAGA
61384 AGAACAGGAACCAGA
1 AGAACAGGAACCAGA
*
61399 AAAACAGGAACCAGA
1 AGAACAGGAACCAGA
61414 AGAACAAGGAACCAGA
1 AGAAC-AGGAACCAGA
* *
61430 GGATCAAGGAACCAG
1 AGAAC-AGGAACCAG
61445 TACGTATGGG
Statistics
Matches: 121, Mismatches: 13, Indels: 13
0.82 0.09 0.09
Matches are distributed among these distances:
15 62 0.51
16 43 0.36
17 16 0.13
ACGTcount: A:0.51, C:0.19, G:0.27, T:0.04
Consensus pattern (15 bp):
AGAACAGGAACCAGA
Left flanking sequence: Indices 60789 -- 61288
CGGCCACCCACGCCCCCGTGCCCGCGTCGCGGTTTGCCCAGGCGGTGGTGGCGAAGCTCCAGGAG
GTCAAGTTCCAGGTCCAGACGGAGTCCGAGCGCGACCTCGACGGGATCGACATCCCCGTGCCCCA
CAACCCGAAGCAGTGGCGCCAGTTTGTGTTTGAGAACCAGCCGCCGCCGTTGGCGTGGTTTGTGC
TGGTGGTGGACCGGCCCACGGTCTTCAAGCTCCTCAACTACTTCACCAAGTGGTTGTGTAGCTCG
AGCGACGACAACCTCAGCTTGTGGATCTGGACGGTGTTTGTGCGGATCGACCGCGAGATGGACGC
CAACGAGGTGGCGGTGATCCGGGATCTCGGGAAGAAGGCGCGCAAGTTGGTGGTGAAGGTGGAGG
CGGACAACCCGGTCAAGTACACGTTGGAGATGGTGGTTGCCGTGGTGGCGTACTACTACGGGCAG
AAGGATATTGTGTAGGGGTGTGGATGGAGGGTTGGTACGGGCCTG
Right flanking sequence: Indices 61445 -- 61944
TACGTATGGGCCGTGCTGGCTATTAATGGGGCGTGCTGGCTATTAATGAGTAATTACCATACAGA
ATGAATGTTTAGACATCGATGGAGCAGAATAGGTAGAGCTAGGAATAGTAATAATAGTATCAACC
CACTCCACTCTTAATAACACACAGCTCGGTTCACACCAATCCAGTTTGTTGATTTTTGATCAGGT
TCACTTCATATTGATCCAGTCCGGTCCACATTGATCCAATTGTCTGCAAACAGCTCGTGTCACAG
CCCTACTTACCGATCACTCGCGTTTATACGTCTATTCTAGACCCACCAAAACTACGAATACGCAC
AAAACACCTTACATAAACTAGCCATAAACGCCATAAACAGCCATAAACCAACCACATACCAACCA
CATACCAACCACATACCAACCACACACCACCCACACACCACCCACACACTAACAACACCCGCTAT
CCTCTTTCCCACACCCACACCCACTTCCACCTTCCCCACCCCGTG
Found at i:61479 original size:20 final size:20
Alignment explanation
Indices: 61450--61492 Score: 77
Period size: 20 Copynumber: 2.1 Consensus size: 20
61440 ACCAGTACGT
61450 ATGGGCCGTGCTGGCTATTA
1 ATGGGCCGTGCTGGCTATTA
*
61470 ATGGGGCGTGCTGGCTATTA
1 ATGGGCCGTGCTGGCTATTA
61490 ATG
1 ATG
61493 AGTAATTACC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.16, C:0.16, G:0.37, T:0.30
Consensus pattern (20 bp):
ATGGGCCGTGCTGGCTATTA
Left flanking sequence: Indices 60950 -- 61449
GAGAACCAGCCGCCGCCGTTGGCGTGGTTTGTGCTGGTGGTGGACCGGCCCACGGTCTTCAAGCT
CCTCAACTACTTCACCAAGTGGTTGTGTAGCTCGAGCGACGACAACCTCAGCTTGTGGATCTGGA
CGGTGTTTGTGCGGATCGACCGCGAGATGGACGCCAACGAGGTGGCGGTGATCCGGGATCTCGGG
AAGAAGGCGCGCAAGTTGGTGGTGAAGGTGGAGGCGGACAACCCGGTCAAGTACACGTTGGAGAT
GGTGGTTGCCGTGGTGGCGTACTACTACGGGCAGAAGGATATTGTGTAGGGGTGTGGATGGAGGG
TTGGTACGGGCCTGAGAACAAGGATCCAGAGAATCAGGGAACCAGAGGAACAAGAAACCAGAAGA
ATTGTGGAACCAGAAGAACAGGAACCAGAAGAACAGGAACCAGAAGAACAGGAACCAGAAAAACA
GGAACCAGAAGAACAAGGAACCAGAGGATCAAGGAACCAGTACGT
Right flanking sequence: Indices 61493 -- 61992
AGTAATTACCATACAGAATGAATGTTTAGACATCGATGGAGCAGAATAGGTAGAGCTAGGAATAG
TAATAATAGTATCAACCCACTCCACTCTTAATAACACACAGCTCGGTTCACACCAATCCAGTTTG
TTGATTTTTGATCAGGTTCACTTCATATTGATCCAGTCCGGTCCACATTGATCCAATTGTCTGCA
AACAGCTCGTGTCACAGCCCTACTTACCGATCACTCGCGTTTATACGTCTATTCTAGACCCACCA
AAACTACGAATACGCACAAAACACCTTACATAAACTAGCCATAAACGCCATAAACAGCCATAAAC
CAACCACATACCAACCACATACCAACCACATACCAACCACACACCACCCACACACCACCCACACA
CTAACAACACCCGCTATCCTCTTTCCCACACCCACACCCACTTCCACCTTCCCCACCCCGTGCGG
CTTGAACGAAAATTTAGCCCGCCACGGACACCACCATGTCGACGT
Found at i:61814 original size:10 final size:10
Alignment explanation
Indices: 61781--61817 Score: 58
Period size: 9 Copynumber: 3.7 Consensus size: 10
61771 AAACACCTTA
61781 CATAAACTAGC
1 CATAAAC-AGC
61792 CATAAAC-GC
1 CATAAACAGC
61801 CATAAACAGC
1 CATAAACAGC
61811 CATAAAC
1 CATAAAC
61818 CAACCACATA
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
9 9 0.36
10 9 0.36
11 7 0.28
ACGTcount: A:0.49, C:0.30, G:0.08, T:0.14
Consensus pattern (10 bp):
CATAAACAGC
Left flanking sequence: Indices 61281 -- 61780
CGGGCCTGAGAACAAGGATCCAGAGAATCAGGGAACCAGAGGAACAAGAAACCAGAAGAATTGTG
GAACCAGAAGAACAGGAACCAGAAGAACAGGAACCAGAAGAACAGGAACCAGAAAAACAGGAACC
AGAAGAACAAGGAACCAGAGGATCAAGGAACCAGTACGTATGGGCCGTGCTGGCTATTAATGGGG
CGTGCTGGCTATTAATGAGTAATTACCATACAGAATGAATGTTTAGACATCGATGGAGCAGAATA
GGTAGAGCTAGGAATAGTAATAATAGTATCAACCCACTCCACTCTTAATAACACACAGCTCGGTT
CACACCAATCCAGTTTGTTGATTTTTGATCAGGTTCACTTCATATTGATCCAGTCCGGTCCACAT
TGATCCAATTGTCTGCAAACAGCTCGTGTCACAGCCCTACTTACCGATCACTCGCGTTTATACGT
CTATTCTAGACCCACCAAAACTACGAATACGCACAAAACACCTTA
Right flanking sequence: Indices 61818 -- 62317
CAACCACATACCAACCACATACCAACCACATACCAACCACACACCACCCACACACCACCCACACA
CTAACAACACCCGCTATCCTCTTTCCCACACCCACACCCACTTCCACCTTCCCCACCCCGTGCGG
CTTGAACGAAAATTTAGCCCGCCACGGACACCACCATGTCGACGTGCAAAGTGAGAGAGGACTTG
ATTGTGCCGTACAAGCACGTGCCCACCAAGCCGCGCAACGAGCTGTCGGCGATGATTGCCCAGCT
GTTGCCGATGGCCGCGATGTTCATGCGCAACCGCATGTTGTCGTGGACGGCGGTGTTCCTTGCCA
CCCAGGCGTTTTTGAACGAGCCGCGCCACAAGCCGGCGGCCGACAAGGACTCGGCGCAGCAGCCG
GCGCTGTTGCGGTTGGTGTTTGCGCTTCTTTCGTTGGTGACGTGCTACATCGACCTTATCTTCCC
GCTGATGTCGCCCCAGGCGCGGCTGGAGCAGATGGCGGCCAAGGC
Found at i:61832 original size:11 final size:11
Alignment explanation
Indices: 61816--61880 Score: 94
Period size: 11 Copynumber: 5.9 Consensus size: 11
61806 ACAGCCATAA
61816 ACCAACCACAT
1 ACCAACCACAT
61827 ACCAACCACAT
1 ACCAACCACAT
61838 ACCAACCACAT
1 ACCAACCACAT
*
61849 ACCAACCACAC
1 ACCAACCACAT
* *
61860 ACCACCCACAC
1 ACCAACCACAT
*
61871 ACCACCCACA
1 ACCAACCACA
61881 CACTAACAAC
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
11 52 1.00
ACGTcount: A:0.43, C:0.52, G:0.00, T:0.05
Consensus pattern (11 bp):
ACCAACCACAT
Left flanking sequence: Indices 61316 -- 61815
CCAGAGGAACAAGAAACCAGAAGAATTGTGGAACCAGAAGAACAGGAACCAGAAGAACAGGAACC
AGAAGAACAGGAACCAGAAAAACAGGAACCAGAAGAACAAGGAACCAGAGGATCAAGGAACCAGT
ACGTATGGGCCGTGCTGGCTATTAATGGGGCGTGCTGGCTATTAATGAGTAATTACCATACAGAA
TGAATGTTTAGACATCGATGGAGCAGAATAGGTAGAGCTAGGAATAGTAATAATAGTATCAACCC
ACTCCACTCTTAATAACACACAGCTCGGTTCACACCAATCCAGTTTGTTGATTTTTGATCAGGTT
CACTTCATATTGATCCAGTCCGGTCCACATTGATCCAATTGTCTGCAAACAGCTCGTGTCACAGC
CCTACTTACCGATCACTCGCGTTTATACGTCTATTCTAGACCCACCAAAACTACGAATACGCACA
AAACACCTTACATAAACTAGCCATAAACGCCATAAACAGCCATAA
Right flanking sequence: Indices 61881 -- 62380
CACTAACAACACCCGCTATCCTCTTTCCCACACCCACACCCACTTCCACCTTCCCCACCCCGTGC
GGCTTGAACGAAAATTTAGCCCGCCACGGACACCACCATGTCGACGTGCAAAGTGAGAGAGGACT
TGATTGTGCCGTACAAGCACGTGCCCACCAAGCCGCGCAACGAGCTGTCGGCGATGATTGCCCAG
CTGTTGCCGATGGCCGCGATGTTCATGCGCAACCGCATGTTGTCGTGGACGGCGGTGTTCCTTGC
CACCCAGGCGTTTTTGAACGAGCCGCGCCACAAGCCGGCGGCCGACAAGGACTCGGCGCAGCAGC
CGGCGCTGTTGCGGTTGGTGTTTGCGCTTCTTTCGTTGGTGACGTGCTACATCGACCTTATCTTC
CCGCTGATGTCGCCCCAGGCGCGGCTGGAGCAGATGGCGGCCAAGGCGGCGGAGACCGCGGCGGA
GACGGTGGCGTCGGCTGTGCTGACGGCGGTGGAGACCGCGGTGGA
Found at i:61892 original size:22 final size:22
Alignment explanation
Indices: 61816--61892 Score: 73
Period size: 22 Copynumber: 3.5 Consensus size: 22
61806 ACAGCCATAA
* * *
61816 ACCAACCACATACCAACCACAT
1 ACCAACAACACACCAACCACAC
* *
61838 ACCAACCACATACCAACCACAC
1 ACCAACAACACACCAACCACAC
* * *
61860 ACCACCCACACACCACCCACAC
1 ACCAACAACACACCAACCACAC
*
61882 ACTAACAACAC
1 ACCAACAACAC
61893 CCGCTATCCT
Statistics
Matches: 48, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 48 1.00
ACGTcount: A:0.44, C:0.51, G:0.00, T:0.05
Consensus pattern (22 bp):
ACCAACAACACACCAACCACAC
Left flanking sequence: Indices 61316 -- 61815
CCAGAGGAACAAGAAACCAGAAGAATTGTGGAACCAGAAGAACAGGAACCAGAAGAACAGGAACC
AGAAGAACAGGAACCAGAAAAACAGGAACCAGAAGAACAAGGAACCAGAGGATCAAGGAACCAGT
ACGTATGGGCCGTGCTGGCTATTAATGGGGCGTGCTGGCTATTAATGAGTAATTACCATACAGAA
TGAATGTTTAGACATCGATGGAGCAGAATAGGTAGAGCTAGGAATAGTAATAATAGTATCAACCC
ACTCCACTCTTAATAACACACAGCTCGGTTCACACCAATCCAGTTTGTTGATTTTTGATCAGGTT
CACTTCATATTGATCCAGTCCGGTCCACATTGATCCAATTGTCTGCAAACAGCTCGTGTCACAGC
CCTACTTACCGATCACTCGCGTTTATACGTCTATTCTAGACCCACCAAAACTACGAATACGCACA
AAACACCTTACATAAACTAGCCATAAACGCCATAAACAGCCATAA
Right flanking sequence: Indices 61893 -- 62392
CCGCTATCCTCTTTCCCACACCCACACCCACTTCCACCTTCCCCACCCCGTGCGGCTTGAACGAA
AATTTAGCCCGCCACGGACACCACCATGTCGACGTGCAAAGTGAGAGAGGACTTGATTGTGCCGT
ACAAGCACGTGCCCACCAAGCCGCGCAACGAGCTGTCGGCGATGATTGCCCAGCTGTTGCCGATG
GCCGCGATGTTCATGCGCAACCGCATGTTGTCGTGGACGGCGGTGTTCCTTGCCACCCAGGCGTT
TTTGAACGAGCCGCGCCACAAGCCGGCGGCCGACAAGGACTCGGCGCAGCAGCCGGCGCTGTTGC
GGTTGGTGTTTGCGCTTCTTTCGTTGGTGACGTGCTACATCGACCTTATCTTCCCGCTGATGTCG
CCCCAGGCGCGGCTGGAGCAGATGGCGGCCAAGGCGGCGGAGACCGCGGCGGAGACGGTGGCGTC
GGCTGTGCTGACGGCGGTGGAGACCGCGGTGGAGACCGCATCCTC
Found at i:62376 original size:12 final size:12
Alignment explanation
Indices: 62361--62386 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
62351 TGTGCTGACG
62361 GCGGTGGAGACC
1 GCGGTGGAGACC
62373 GCGGTGGAGACC
1 GCGGTGGAGACC
62385 GC
1 GC
62387 ATCCTCGAAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.15, C:0.27, G:0.50, T:0.08
Consensus pattern (12 bp):
GCGGTGGAGACC
Left flanking sequence: Indices 61861 -- 62360
CCACCCACACACCACCCACACACTAACAACACCCGCTATCCTCTTTCCCACACCCACACCCACTT
CCACCTTCCCCACCCCGTGCGGCTTGAACGAAAATTTAGCCCGCCACGGACACCACCATGTCGAC
GTGCAAAGTGAGAGAGGACTTGATTGTGCCGTACAAGCACGTGCCCACCAAGCCGCGCAACGAGC
TGTCGGCGATGATTGCCCAGCTGTTGCCGATGGCCGCGATGTTCATGCGCAACCGCATGTTGTCG
TGGACGGCGGTGTTCCTTGCCACCCAGGCGTTTTTGAACGAGCCGCGCCACAAGCCGGCGGCCGA
CAAGGACTCGGCGCAGCAGCCGGCGCTGTTGCGGTTGGTGTTTGCGCTTCTTTCGTTGGTGACGT
GCTACATCGACCTTATCTTCCCGCTGATGTCGCCCCAGGCGCGGCTGGAGCAGATGGCGGCCAAG
GCGGCGGAGACCGCGGCGGAGACGGTGGCGTCGGCTGTGCTGACG
Right flanking sequence: Indices 62387 -- 62886
ATCCTCGAAGGGCTGGTGGCCGTTGTAAAATAGCATAGTGAATAATATTGTTTGATGATAAGGGG
GAGGGGGGTGTATGGTTTGAGCTATTGGAGCCTTGTCGGGTTTCAGTTTGAAGCCGTTATTGTAG
GGTTAGACTACTCAGAGCCGTCATTGTAGGGTTGGATTACTTGGAGCTGTCATTGTATAATCAAT
GGATAGCTCTTGTGTGGTTACTGGGTGAGTGGTCCTCAATAGTACTAACCGTGAATCAGCCCTTG
GGGTTAGATTCCAGTCAGTTATCAAAGAGACCCTACCCTCCAGTCAGTTATCAAAGAGACCCTAC
CCTCCAGTCAGTTATCAAAGAGACCCTACCCTCCAGTCAGAAAGATACCCTACTCTCCAGTCAGA
AAGATACCCTACCCTCCAGTCAGATACCCTACCCTCCAGACAGATACCCTACCTTCCAGCCAGTT
CAATCAAGAAACTTGTCCTGGCCTGTGGCCACACCAAACACCTTT
Found at i:62542 original size:29 final size:29
Alignment explanation
Indices: 62503--62573 Score: 88
Period size: 29 Copynumber: 2.4 Consensus size: 29
62493 TTCAGTTTGA
*
62503 AGCCGTTATTGTAGGGTTAGACTACTCAG
1 AGCCGTCATTGTAGGGTTAGACTACTCAG
* * **
62532 AGCCGTCATTGTAGGGTTGGATTACTTGG
1 AGCCGTCATTGTAGGGTTAGACTACTCAG
*
62561 AGCTGTCATTGTA
1 AGCCGTCATTGTA
62574 TAATCAATGG
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
29 36 1.00
ACGTcount: A:0.21, C:0.15, G:0.30, T:0.34
Consensus pattern (29 bp):
AGCCGTCATTGTAGGGTTAGACTACTCAG
Left flanking sequence: Indices 62003 -- 62502
AGAGGACTTGATTGTGCCGTACAAGCACGTGCCCACCAAGCCGCGCAACGAGCTGTCGGCGATGA
TTGCCCAGCTGTTGCCGATGGCCGCGATGTTCATGCGCAACCGCATGTTGTCGTGGACGGCGGTG
TTCCTTGCCACCCAGGCGTTTTTGAACGAGCCGCGCCACAAGCCGGCGGCCGACAAGGACTCGGC
GCAGCAGCCGGCGCTGTTGCGGTTGGTGTTTGCGCTTCTTTCGTTGGTGACGTGCTACATCGACC
TTATCTTCCCGCTGATGTCGCCCCAGGCGCGGCTGGAGCAGATGGCGGCCAAGGCGGCGGAGACC
GCGGCGGAGACGGTGGCGTCGGCTGTGCTGACGGCGGTGGAGACCGCGGTGGAGACCGCATCCTC
GAAGGGCTGGTGGCCGTTGTAAAATAGCATAGTGAATAATATTGTTTGATGATAAGGGGGAGGGG
GGTGTATGGTTTGAGCTATTGGAGCCTTGTCGGGTTTCAGTTTGA
Right flanking sequence: Indices 62574 -- 63073
TAATCAATGGATAGCTCTTGTGTGGTTACTGGGTGAGTGGTCCTCAATAGTACTAACCGTGAATC
AGCCCTTGGGGTTAGATTCCAGTCAGTTATCAAAGAGACCCTACCCTCCAGTCAGTTATCAAAGA
GACCCTACCCTCCAGTCAGTTATCAAAGAGACCCTACCCTCCAGTCAGAAAGATACCCTACTCTC
CAGTCAGAAAGATACCCTACCCTCCAGTCAGATACCCTACCCTCCAGACAGATACCCTACCTTCC
AGCCAGTTCAATCAAGAAACTTGTCCTGGCCTGTGGCCACACCAAACACCTTTCCTCTATTTATC
TATCCAGCTAGCTCATACACGGGCACTTCAACAGACCCAAGATATTGCGTCTCACCTGCAACGAG
TCCACCACCAGCTTCGCAAGCTTGTCGCGGTTGAACCGGAGAAGCGAGTCGATCCGCTCGAGCTC
GCTCTTGAAGGTGTCCCCCATCATCTTGGCGTTGGCCAACTGGTT
Found at i:62698 original size:29 final size:29
Alignment explanation
Indices: 62656--62751 Score: 192
Period size: 29 Copynumber: 3.3 Consensus size: 29
62646 GGGGTTAGAT
62656 TCCAGTCAGTTATCAAAGAGACCCTACCC
1 TCCAGTCAGTTATCAAAGAGACCCTACCC
62685 TCCAGTCAGTTATCAAAGAGACCCTACCC
1 TCCAGTCAGTTATCAAAGAGACCCTACCC
62714 TCCAGTCAGTTATCAAAGAGACCCTACCC
1 TCCAGTCAGTTATCAAAGAGACCCTACCC
62743 TCCAGTCAG
1 TCCAGTCAG
62752 AAAGATACCC
Statistics
Matches: 67, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 67 1.00
ACGTcount: A:0.30, C:0.34, G:0.15, T:0.21
Consensus pattern (29 bp):
TCCAGTCAGTTATCAAAGAGACCCTACCC
Left flanking sequence: Indices 62156 -- 62655
GAACGAGCCGCGCCACAAGCCGGCGGCCGACAAGGACTCGGCGCAGCAGCCGGCGCTGTTGCGGT
TGGTGTTTGCGCTTCTTTCGTTGGTGACGTGCTACATCGACCTTATCTTCCCGCTGATGTCGCCC
CAGGCGCGGCTGGAGCAGATGGCGGCCAAGGCGGCGGAGACCGCGGCGGAGACGGTGGCGTCGGC
TGTGCTGACGGCGGTGGAGACCGCGGTGGAGACCGCATCCTCGAAGGGCTGGTGGCCGTTGTAAA
ATAGCATAGTGAATAATATTGTTTGATGATAAGGGGGAGGGGGGTGTATGGTTTGAGCTATTGGA
GCCTTGTCGGGTTTCAGTTTGAAGCCGTTATTGTAGGGTTAGACTACTCAGAGCCGTCATTGTAG
GGTTGGATTACTTGGAGCTGTCATTGTATAATCAATGGATAGCTCTTGTGTGGTTACTGGGTGAG
TGGTCCTCAATAGTACTAACCGTGAATCAGCCCTTGGGGTTAGAT
Right flanking sequence: Indices 62752 -- 63251
AAAGATACCCTACTCTCCAGTCAGAAAGATACCCTACCCTCCAGTCAGATACCCTACCCTCCAGA
CAGATACCCTACCTTCCAGCCAGTTCAATCAAGAAACTTGTCCTGGCCTGTGGCCACACCAAACA
CCTTTCCTCTATTTATCTATCCAGCTAGCTCATACACGGGCACTTCAACAGACCCAAGATATTGC
GTCTCACCTGCAACGAGTCCACCACCAGCTTCGCAAGCTTGTCGCGGTTGAACCGGAGAAGCGAG
TCGATCCGCTCGAGCTCGCTCTTGAAGGTGTCCCCCATCATCTTGGCGTTGGCCAACTGGTTGTA
GAACGCAGCCTCGCGGGTGGTTTCTTTGGCGGTGGCTTCCATCAACGGGCCAAGCTCGCCCTGCG
AGAGCCACTGCGACCACTGGTCCACCACCCCGGCCCCCTCCTCCAACTCGCCGTCCACCACCCGG
TGCACACCAAACGCCTGGTTGATGGCGTCCACGAGCTTGGGGAGC
Found at i:62755 original size:24 final size:24
Alignment explanation
Indices: 62670--62800 Score: 145
Period size: 29 Copynumber: 5.0 Consensus size: 24
62660 GTCAGTTATC
62670 AAAGAGACCCTACCCTCCAGTCAG
1 AAAGAGACCCTACCCTCCAGTCAG
62694 TTATCAAAGAGACCCTACCCTCCAGTCAG
1 -----AAAGAGACCCTACCCTCCAGTCAG
62723 TTATCAAAGAGACCCTACCCTCCAGTCAG
1 -----AAAGAGACCCTACCCTCCAGTCAG
* *
62752 AAAGATACCCTACTCTCCAGTCAG
1 AAAGAGACCCTACCCTCCAGTCAG
*
62776 AAAGATACCCTACCCTCCAGTCAG
1 AAAGAGACCCTACCCTCCAGTCAG
62800 A
1 A
62801 TACCCTACCC
Statistics
Matches: 99, Mismatches: 3, Indels: 5
0.93 0.03 0.05
Matches are distributed among these distances:
24 46 0.46
29 53 0.54
ACGTcount: A:0.33, C:0.35, G:0.14, T:0.18
Consensus pattern (24 bp):
AAAGAGACCCTACCCTCCAGTCAG
Left flanking sequence: Indices 62170 -- 62669
ACAAGCCGGCGGCCGACAAGGACTCGGCGCAGCAGCCGGCGCTGTTGCGGTTGGTGTTTGCGCTT
CTTTCGTTGGTGACGTGCTACATCGACCTTATCTTCCCGCTGATGTCGCCCCAGGCGCGGCTGGA
GCAGATGGCGGCCAAGGCGGCGGAGACCGCGGCGGAGACGGTGGCGTCGGCTGTGCTGACGGCGG
TGGAGACCGCGGTGGAGACCGCATCCTCGAAGGGCTGGTGGCCGTTGTAAAATAGCATAGTGAAT
AATATTGTTTGATGATAAGGGGGAGGGGGGTGTATGGTTTGAGCTATTGGAGCCTTGTCGGGTTT
CAGTTTGAAGCCGTTATTGTAGGGTTAGACTACTCAGAGCCGTCATTGTAGGGTTGGATTACTTG
GAGCTGTCATTGTATAATCAATGGATAGCTCTTGTGTGGTTACTGGGTGAGTGGTCCTCAATAGT
ACTAACCGTGAATCAGCCCTTGGGGTTAGATTCCAGTCAGTTATC
Right flanking sequence: Indices 62801 -- 63300
TACCCTACCCTCCAGACAGATACCCTACCTTCCAGCCAGTTCAATCAAGAAACTTGTCCTGGCCT
GTGGCCACACCAAACACCTTTCCTCTATTTATCTATCCAGCTAGCTCATACACGGGCACTTCAAC
AGACCCAAGATATTGCGTCTCACCTGCAACGAGTCCACCACCAGCTTCGCAAGCTTGTCGCGGTT
GAACCGGAGAAGCGAGTCGATCCGCTCGAGCTCGCTCTTGAAGGTGTCCCCCATCATCTTGGCGT
TGGCCAACTGGTTGTAGAACGCAGCCTCGCGGGTGGTTTCTTTGGCGGTGGCTTCCATCAACGGG
CCAAGCTCGCCCTGCGAGAGCCACTGCGACCACTGGTCCACCACCCCGGCCCCCTCCTCCAACTC
GCCGTCCACCACCCGGTGCACACCAAACGCCTGGTTGATGGCGTCCACGAGCTTGGGGAGCTCGC
GCTTGCCCCGGAACTTGTACCCACGGCCAGGCTCGGGGACAAACA
Found at i:62803 original size:20 final size:21
Alignment explanation
Indices: 62729--62835 Score: 110
Period size: 24 Copynumber: 4.9 Consensus size: 21
62719 TCAGTTATCA
*
62729 AAGAGACCCTACCCTCCAGTC
1 AAGATACCCTACCCTCCAGTC
*
62750 AGAAAGATACCCTACTCTCCAGTC
1 ---AAGATACCCTACCCTCCAGTC
62774 AGAAAGATACCCTACCCTCCAGTC
1 ---AAGATACCCTACCCTCCAGTC
*
62798 -AGATACCCTACCCTCCAGAC
1 AAGATACCCTACCCTCCAGTC
*
62818 -AGATACCCTACCTTCCAG
1 AAGATACCCTACCCTCCAG
62836 CCAGTTCAAT
Statistics
Matches: 78, Mismatches: 5, Indels: 4
0.90 0.06 0.05
Matches are distributed among these distances:
20 36 0.46
24 42 0.54
ACGTcount: A:0.31, C:0.39, G:0.12, T:0.18
Consensus pattern (21 bp):
AAGATACCCTACCCTCCAGTC
Left flanking sequence: Indices 62229 -- 62728
GCGCTTCTTTCGTTGGTGACGTGCTACATCGACCTTATCTTCCCGCTGATGTCGCCCCAGGCGCG
GCTGGAGCAGATGGCGGCCAAGGCGGCGGAGACCGCGGCGGAGACGGTGGCGTCGGCTGTGCTGA
CGGCGGTGGAGACCGCGGTGGAGACCGCATCCTCGAAGGGCTGGTGGCCGTTGTAAAATAGCATA
GTGAATAATATTGTTTGATGATAAGGGGGAGGGGGGTGTATGGTTTGAGCTATTGGAGCCTTGTC
GGGTTTCAGTTTGAAGCCGTTATTGTAGGGTTAGACTACTCAGAGCCGTCATTGTAGGGTTGGAT
TACTTGGAGCTGTCATTGTATAATCAATGGATAGCTCTTGTGTGGTTACTGGGTGAGTGGTCCTC
AATAGTACTAACCGTGAATCAGCCCTTGGGGTTAGATTCCAGTCAGTTATCAAAGAGACCCTACC
CTCCAGTCAGTTATCAAAGAGACCCTACCCTCCAGTCAGTTATCA
Right flanking sequence: Indices 62836 -- 63335
CCAGTTCAATCAAGAAACTTGTCCTGGCCTGTGGCCACACCAAACACCTTTCCTCTATTTATCTA
TCCAGCTAGCTCATACACGGGCACTTCAACAGACCCAAGATATTGCGTCTCACCTGCAACGAGTC
CACCACCAGCTTCGCAAGCTTGTCGCGGTTGAACCGGAGAAGCGAGTCGATCCGCTCGAGCTCGC
TCTTGAAGGTGTCCCCCATCATCTTGGCGTTGGCCAACTGGTTGTAGAACGCAGCCTCGCGGGTG
GTTTCTTTGGCGGTGGCTTCCATCAACGGGCCAAGCTCGCCCTGCGAGAGCCACTGCGACCACTG
GTCCACCACCCCGGCCCCCTCCTCCAACTCGCCGTCCACCACCCGGTGCACACCAAACGCCTGGT
TGATGGCGTCCACGAGCTTGGGGAGCTCGCGCTTGCCCCGGAACTTGTACCCACGGCCAGGCTCG
GGGACAAACAAGAGGGTGGGGATGCTCTGGATGTCGTACTCCTCC
Found at i:64601 original size:13 final size:13
Alignment explanation
Indices: 64583--64658 Score: 125
Period size: 13 Copynumber: 5.8 Consensus size: 13
64573 ACGTTCCACT
64583 CACCGTAGCACCA
1 CACCGTAGCACCA
64596 CACCGTAGCACCA
1 CACCGTAGCACCA
*
64609 CACTGTAGCACCA
1 CACCGTAGCACCA
*
64622 CACTGTAGCACCA
1 CACCGTAGCACCA
*
64635 CACTGTAGCACCA
1 CACCGTAGCACCA
64648 CACCGTAGCAC
1 CACCGTAGCAC
64659 TCCCCACTCG
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
13 61 1.00
ACGTcount: A:0.30, C:0.42, G:0.16, T:0.12
Consensus pattern (13 bp):
CACCGTAGCACCA
Left flanking sequence: Indices 64083 -- 64582
CGGGCTTGGCGGGCTTGGCACGTCAAATAGGAAGGCGGGGTTAGGTAAGCGGGTACCCCACGTTT
TTGACTCGTGTGAGAGAATGGGGGTTGGGTGGAGGTTGGGTGGAGTGGTGGGTAGAATAATGGAG
GTGGTGGGTCTAGTGTTATATGATCAGGGTTGGAGTAGCGTGGACCGGGAGGCCTCAGAAATTTA
GATAGTGGAGGCTATGAGTGACGTTTCCGTGTTAATTGAATTTGATCGACAAAATAGAGGTGTTA
CCTGTGTGGTAGAAGTACTACGTGTGGTAATATTATTAAGGTTTGTGACGGATTCGCAGGCGGTG
TAACGAGTAATTAAAGCCAATTTCAGGGTGCTGTGAGTCTCGTATTGTTCCATTGTTCTTGTGTG
GATACTGAAACCTCCACTGTTTTCCTTTATTCCGCTTTGTACGCTCTGTTTTGTGATAGCATTTA
TTAACAACTGAGACTACTGTAACCACACGAACCGGACGTTCCACT
Right flanking sequence: Indices 64659 -- 65158
TCCCCACTCGTTCCGGTTACAATGCAGTGTCTATTCTCTATAAATGCTATTACCACGCAATGACC
TTGGTCTTCTGCACGAGCCGCGTGTGGTCGGCAAAAGTTCTCCCCGCCTTCACGCACTCGTTGTA
GATGGGCTGGACGTTCTTGGGCTGCGCCCGGGCCAACCAGATCATCTCGCCGTCCTCGCGCCGGT
ACACCATCACGTTGGCGGCGTACTTGTGCTGGCCAAGGTGGTTGACGAACCCGACGACAATCCCG
CCCTCGCGGTTGTCCCCGGTGTCGCGGTACACGCCGTCGTCGCGGATGTGCAACTCAAACTCCTT
CTTGAGGAGCGGAGCCGTCACCCCACACCGCTTGTCACGGGTGCGGTGCGAGCAGAGGATCACGT
AGGCCTTCATGTGGTCAATGGCCACCTTGACACCGCTGCCGTCGCCCAACAAGTCCGCGGTCTCC
TCGATGACGGAGCCCTCAGCCCGGGCTTTGACCAACTCGGGGACA
Found at i:66178 original size:19 final size:19
Alignment explanation
Indices: 66154--66194 Score: 64
Period size: 19 Copynumber: 2.2 Consensus size: 19
66144 GCTGGAGGGG
*
66154 TCATGGGAGGGCCACGGGA
1 TCATGGCAGGGCCACGGGA
*
66173 TCATGGCTGGGCCACGGGA
1 TCATGGCAGGGCCACGGGA
66192 TCA
1 TCA
66195 AAGCTGGTGG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.20, C:0.24, G:0.41, T:0.15
Consensus pattern (19 bp):
TCATGGCAGGGCCACGGGA
Left flanking sequence: Indices 65654 -- 66153
ATGCAAAGTAATCAAAAGAAATTCTTGGCAAAGCCCACGGGGGCCTCGGGGGTGGTCTAAGCCAC
CGCAGAGAACGGTGGCCGCGCGGCGCGAGACAACCACAGTTGTGGGTGTTTTTTCAGCGCTGATT
GCGCGGGCGTACTTGCTGAGGTGGTTTTTTTCAGTCGGAACGCGGATCTGATAATGCACGATCGG
ACCGATAGTGCATGACGTGATTTATAATCGACGGAGAAAATATGGAGATAGACGGGGATGGGGGC
TAGGTGGGTACGAGGGGGGTGTTTGCGAGCCGGAGAAGCGCTGGGTGGTGTGTTTGGTTTTGTGC
TGGGGCTGGTTTCAGTCTGGTTTTTTTAGCTGCTTTTGTCGTGGCTAAAGATGGCAGAATACCCC
CGGTGGGCCCATCTGATAGGCAGCCGCGCGTTATTGTGGCCGCAATAGACGCGGCATTGTTCGAA
CTTTAAGCCTCGTGTTCTGTGTGGGGTCCATCAAGGCTGGAGGGG
Right flanking sequence: Indices 66195 -- 66694
AAGCTGGTGGGACTACGGGCTCTGGACAATCCAGGGCTGACGTCATGACATCAACGAAAAATCTA
CGCAATTATGAAAAGGAGATCTTGTATTACTCGTTGGCTGTTTGGGCAATAGCGGTGCTCTCGAA
CCAGTCGAGAAAGTCCTCCGCTTCCACGTTTCTCCAGTCTTGCACGAAATACGGGTGTTCCACAC
AGAGGAGCTGGTGCAAGTACGGCCCGAGCGTGCGGTGCCTTGCCTCGAACCGCCGCGTCTCCTGG
GCGTGCCACTTGCGGTAGAGAAAGACAGCCACCCGGGGCACAAACGATAGCGCCACCCCCGAGAG
CACTACGATGGCTATGTAGGGGATAACCCACCCAAAAGCCGTCACCGAGTTTGCTTGCCACACCA
AGCTCGCTGCTCCGCACGCCAACACCGTACCCCAGGTGTGGGCCCGGGCGAGACCCTTCTTCATG
CGGAAGTATTCCCCCATCAACATCGGGCGCCGGATGGGCTCGAGA
Found at i:66200 original size:19 final size:19
Alignment explanation
Indices: 66162--66201 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
66152 GGTCATGGGA
**
66162 GGGCCACGGGATCATGGCT
1 GGGCCACGGGATCAAAGCT
66181 GGGCCACGGGATCAAAGCT
1 GGGCCACGGGATCAAAGCT
66200 GG
1 GG
66202 TGGGACTACG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.20, C:0.25, G:0.42, T:0.12
Consensus pattern (19 bp):
GGGCCACGGGATCAAAGCT
Left flanking sequence: Indices 65662 -- 66161
TAATCAAAAGAAATTCTTGGCAAAGCCCACGGGGGCCTCGGGGGTGGTCTAAGCCACCGCAGAGA
ACGGTGGCCGCGCGGCGCGAGACAACCACAGTTGTGGGTGTTTTTTCAGCGCTGATTGCGCGGGC
GTACTTGCTGAGGTGGTTTTTTTCAGTCGGAACGCGGATCTGATAATGCACGATCGGACCGATAG
TGCATGACGTGATTTATAATCGACGGAGAAAATATGGAGATAGACGGGGATGGGGGCTAGGTGGG
TACGAGGGGGGTGTTTGCGAGCCGGAGAAGCGCTGGGTGGTGTGTTTGGTTTTGTGCTGGGGCTG
GTTTCAGTCTGGTTTTTTTAGCTGCTTTTGTCGTGGCTAAAGATGGCAGAATACCCCCGGTGGGC
CCATCTGATAGGCAGCCGCGCGTTATTGTGGCCGCAATAGACGCGGCATTGTTCGAACTTTAAGC
CTCGTGTTCTGTGTGGGGTCCATCAAGGCTGGAGGGGTCATGGGA
Right flanking sequence: Indices 66202 -- 66701
TGGGACTACGGGCTCTGGACAATCCAGGGCTGACGTCATGACATCAACGAAAAATCTACGCAATT
ATGAAAAGGAGATCTTGTATTACTCGTTGGCTGTTTGGGCAATAGCGGTGCTCTCGAACCAGTCG
AGAAAGTCCTCCGCTTCCACGTTTCTCCAGTCTTGCACGAAATACGGGTGTTCCACACAGAGGAG
CTGGTGCAAGTACGGCCCGAGCGTGCGGTGCCTTGCCTCGAACCGCCGCGTCTCCTGGGCGTGCC
ACTTGCGGTAGAGAAAGACAGCCACCCGGGGCACAAACGATAGCGCCACCCCCGAGAGCACTACG
ATGGCTATGTAGGGGATAACCCACCCAAAAGCCGTCACCGAGTTTGCTTGCCACACCAAGCTCGC
TGCTCCGCACGCCAACACCGTACCCCAGGTGTGGGCCCGGGCGAGACCCTTCTTCATGCGGAAGT
ATTCCCCCATCAACATCGGGCGCCGGATGGGCTCGAGACCGAGGA
Found at i:67004 original size:14 final size:14
Alignment explanation
Indices: 66985--67012 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
66975 ACAAAACACG
66985 CAGTGGTTCCACAT
1 CAGTGGTTCCACAT
66999 CAGTGGTTCCACAT
1 CAGTGGTTCCACAT
67013 ATCCACTCGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.21, C:0.29, G:0.21, T:0.29
Consensus pattern (14 bp):
CAGTGGTTCCACAT
Left flanking sequence: Indices 66485 -- 66984
ACCCGGGGCACAAACGATAGCGCCACCCCCGAGAGCACTACGATGGCTATGTAGGGGATAACCCA
CCCAAAAGCCGTCACCGAGTTTGCTTGCCACACCAAGCTCGCTGCTCCGCACGCCAACACCGTAC
CCCAGGTGTGGGCCCGGGCGAGACCCTTCTTCATGCGGAAGTATTCCCCCATCAACATCGGGCGC
CGGATGGGCTCGAGACCGAGGATCTGGGCGGAAATCGTGGAGAGCATGGGGGTAGAGGGCAGGAT
ATGTGGTTTAAATAGCGAGTGTGTGGTCTTGGTGATTCCACTTTTGGAGGTGGCAATGGCAGTGG
GTGTTTCAAATCCATGCACTGCATGTTGACAGGTGTTAAGCGAGGGCAGGGTCTAGTGGCGGTTT
AGAGGAGCGTCGATCTCTCGTAAACCAGCGACATTGACTAAAGTCGTCGCAATTGTGTCGGGTAG
TAGTGAGACGTGAAAGAGATCAACCAGTGGGTCACACAAAACACG
Right flanking sequence: Indices 67013 -- 67512
ATCCACTCGAAACGGCTGGTGGCATACCGCATGTTAACACCTCTGCGTATTTTTGGAAGTGATCT
GGAATAGTCCACTAAATCACCGCTACTGTACCCAGTCTCTACCATCGTTATATTCGTTAGCCTAT
GTTCCTATCAACTACTCATGCTCCACGTATTCGTCCAGGGACCGATTCCGGTTGCGTCCTGCCAA
GGCCGCAAAGACAATAAGCACGGGCACCGTCGCGTAGACCCCTGCGCTCAACAACGAGTTGAAGC
CTACGCGGCGACTGGCATACACCTCCGAGGAGACCGCACAGAGCGTGAAGCTGGTCAGGCCAAAC
ACCACCACCAGCTGGAGTACGGGGGACAACACGGTGGAGGCCACCAGGTAGAGCGCAACAAAGTA
GCGAGCCACGCGGTCCTTGACCCGCGAATACAACCCGACAAACATAGCGACACTACGATGCCAGC
ACTATATAACCTCCCGAGATCCCCCAGCGCCTTCCGTATTGGGCC
Found at i:68668 original size:14 final size:14
Alignment explanation
Indices: 68634--68679 Score: 67
Period size: 14 Copynumber: 3.4 Consensus size: 14
68624 TACAACTCTG
*
68634 CACACCTTCATC-T
1 CACACCTTCACCTT
68647 CACACCTTCACCTT
1 CACACCTTCACCTT
*
68661 CCCACCTTCACCTT
1 CACACCTTCACCTT
68675 CACAC
1 CACAC
68680 AATAGAGAAT
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
13 11 0.38
14 18 0.62
ACGTcount: A:0.22, C:0.52, G:0.00, T:0.26
Consensus pattern (14 bp):
CACACCTTCACCTT
Left flanking sequence: Indices 68134 -- 68633
GTTTTCCATCCGTTGTCTTTCAGAACCTATATGTTCGTGCACCTTCATCTTTCAGCAGCTGGTTT
CATTTCTCAGCCACGTACCGAACACAGAACAATTCCATACCAACCAAACATACGGAACTTTATTC
GTGCACCCCATTTCCCTGGAAGTACGCCCCTATAAATTGAAAAGTTGAACAAACTACGACAACGT
ACTCGAAATCAAAAAGTAGATACCTCTACTCCTTCGAAGGATTACAAAGTACTCTAGGGCATACC
ACATCGATATTTTAGTTCATCAATGGTAATAGTCATATCATCAGGTGTGTTATTTCGGGCTAGAG
AAAGAGAGTCACGCAGCGTCACACTTGGTACCACTTTCAGTCCAATTGGCTTGAATATTCAGTTT
CTCCGACGTATTTAGGACTTGGGGGGTAAGGATAAATACCCGTGTTCCAAATGAAACAAATCCGT
ATCAACTACGAACACACGTACCTATCCAAGCAAAATACAACTCTG
Right flanking sequence: Indices 68680 -- 69179
AATAGAGAATCAGCAAGACACAGTATGATTCAATTGGTAATTCCATTTCGCAAGAACTTTGGCAA
CATTAAGAACTGATGGCTGCGCACGATCTAATGAGCCACTCCCGTTGATAACAGAAAATATACCA
GACCACGTTAAACTACATTGACGCATTTTTCGTTCACACCTCACTTTCACACCTTCCTTCCCACC
CCCTCTTCTTCTTCTTCCTTACCTTTATTAATCTAACCTATGCATATGCTCACAACATCTCGTTA
AGCTCGGCCAACTTCTCCGCCAACTCGTCAAACTTGCCAAGCACCGGCAAAAACATGTCGTGCAC
CTGGCGCAGCTTGCGCTTGTCGGCGATCTCCTGGATGGACCCGTTGGACAGCAACTGGTTCTTGC
CCGGGGTGCCCAACAAAAGCAGGTTGGTCGAGGTGAGCGGGGTGATCTCCCCGTGGGGGAGGTCG
TCGACGTCGTCGTCGTCGGAATTGTTGATGAAAAGCCCCCCCACC
Found at i:69472 original size:18 final size:21
Alignment explanation
Indices: 69440--69490 Score: 63
Period size: 18 Copynumber: 2.6 Consensus size: 21
69430 CGTCCAGCCG
* *
69440 CGCCAGCAGCAGTGCCAG-G-
1 CGCCACCAGCGGTGCCAGCGA
69459 C-CCACCAGCGGTGCCAGCGA
1 CGCCACCAGCGGTGCCAGCGA
69479 CGCCACCAGCGG
1 CGCCACCAGCGG
69491 CGCCCGCACC
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
18 14 0.52
19 2 0.07
20 1 0.04
21 10 0.37
ACGTcount: A:0.20, C:0.43, G:0.33, T:0.04
Consensus pattern (21 bp):
CGCCACCAGCGGTGCCAGCGA
Left flanking sequence: Indices 68940 -- 69439
AGCTCGGCCAACTTCTCCGCCAACTCGTCAAACTTGCCAAGCACCGGCAAAAACATGTCGTGCAC
CTGGCGCAGCTTGCGCTTGTCGGCGATCTCCTGGATGGACCCGTTGGACAGCAACTGGTTCTTGC
CCGGGGTGCCCAACAAAAGCAGGTTGGTCGAGGTGAGCGGGGTGATCTCCCCGTGGGGGAGGTCG
TCGACGTCGTCGTCGTCGGAATTGTTGATGAAAAGCCCCCCCACCAGCAACGAGGTGTCGGGCAG
CTGCGTCGAGTCAAACGACATGAACGACGTGTCGGCGTGGTTGGGGGTGATGGTGGACACGCTCG
CCTGCAGCTCCTTCTTGGCGAGCCCAGAGCTGCGCCGCACCACCAGTGCCTGCAGCAGCACCCGC
TTCAGGAGCCGTCGCAGGTCCCGCGGCGGGATCCCGTCCTGCGACGACGCCAGCCCGCGCAGCAG
CACCAGCAACGGCAGCGCCAGGGCCGCGCGGTGGACGTCCAGCCG
Right flanking sequence: Indices 69491 -- 69990
CGCCCGCACCGGCAGCGGCTTGGTCGCCGGGCGCTCCACAGAACGATCCGACACGTGACGCTCGG
TCACGGGACGGTCCGTCATGTGACGATCTGACACGTGACGCTCTGGCACGTGACGCTCCACCCGC
TCCGTCTTGGGCAGGCCCCGTGGCAGCCGCAACAACAGGCTCTGGTCGCCAAACAACTCGTCGAT
GCGCGAGTTGCGGCGGGGCGTGCCGCCCAACAGCTCGCGGCGCAGCTTGGGCTCCGTCGCTGCCC
CCGTCGCTGCCACCGTCGCCACCGTCGCCACCGGAGCGTCGCCCTGCTCGGCCGTGAGCTCGCGG
ATCTCGTTGCGGGCCTTGCGGAGCTTTTCCAAGCGCTTGCGGCGGTCGTCGCGGCCCGGGTCGGG
CTTCGCCTCGGGGGCCGGCAGCAGCAGCAGGATGGTGTCGTTCAACAGGTCGCTCCCGTAGTCGT
GCTCCAACTGCTCCTGGATGTCCAGGGTCATTTTCGTGAGCCGCT
Found at i:69593 original size:15 final size:15
Alignment explanation
Indices: 69533--69610 Score: 57
Period size: 15 Copynumber: 5.2 Consensus size: 15
69523 GCTCCACAGA
69533 ACGATCCGACACGTG
1 ACGATCCGACACGTG
* * * *
69548 ACGCTCGGTCACGGG
1 ACGATCCGACACGTG
* * *
69563 ACGGTCCGTCATGTG
1 ACGATCCGACACGTG
*
69578 ACGATCTGACACGTG
1 ACGATCCGACACGTG
* * *
69593 ACGCTCTGGCACGTG
1 ACGATCCGACACGTG
69608 ACG
1 ACG
69611 CTCCACCCGC
Statistics
Matches: 49, Mismatches: 14, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
15 49 1.00
ACGTcount: A:0.19, C:0.31, G:0.32, T:0.18
Consensus pattern (15 bp):
ACGATCCGACACGTG
Left flanking sequence: Indices 69033 -- 69532
TCCTGGATGGACCCGTTGGACAGCAACTGGTTCTTGCCCGGGGTGCCCAACAAAAGCAGGTTGGT
CGAGGTGAGCGGGGTGATCTCCCCGTGGGGGAGGTCGTCGACGTCGTCGTCGTCGGAATTGTTGA
TGAAAAGCCCCCCCACCAGCAACGAGGTGTCGGGCAGCTGCGTCGAGTCAAACGACATGAACGAC
GTGTCGGCGTGGTTGGGGGTGATGGTGGACACGCTCGCCTGCAGCTCCTTCTTGGCGAGCCCAGA
GCTGCGCCGCACCACCAGTGCCTGCAGCAGCACCCGCTTCAGGAGCCGTCGCAGGTCCCGCGGCG
GGATCCCGTCCTGCGACGACGCCAGCCCGCGCAGCAGCACCAGCAACGGCAGCGCCAGGGCCGCG
CGGTGGACGTCCAGCCGCGCCAGCAGCAGTGCCAGGCCCACCAGCGGTGCCAGCGACGCCACCAG
CGGCGCCCGCACCGGCAGCGGCTTGGTCGCCGGGCGCTCCACAGA
Right flanking sequence: Indices 69611 -- 70110
CTCCACCCGCTCCGTCTTGGGCAGGCCCCGTGGCAGCCGCAACAACAGGCTCTGGTCGCCAAACA
ACTCGTCGATGCGCGAGTTGCGGCGGGGCGTGCCGCCCAACAGCTCGCGGCGCAGCTTGGGCTCC
GTCGCTGCCCCCGTCGCTGCCACCGTCGCCACCGTCGCCACCGGAGCGTCGCCCTGCTCGGCCGT
GAGCTCGCGGATCTCGTTGCGGGCCTTGCGGAGCTTTTCCAAGCGCTTGCGGCGGTCGTCGCGGC
CCGGGTCGGGCTTCGCCTCGGGGGCCGGCAGCAGCAGCAGGATGGTGTCGTTCAACAGGTCGCTC
CCGTAGTCGTGCTCCAACTGCTCCTGGATGTCCAGGGTCATTTTCGTGAGCCGCTCGAGGATCAC
CAGCCGCCGCAACTGCTGCAAGTTGTTGGGCATGTCCGGGCCCAGCGGCAGCTCGGGCAGCCGCT
TGAACGGGGCCTGGCGCACCGGGGGCGTGTCTGGCGAGAACAGCC
Found at i:69611 original size:15 final size:15
Alignment explanation
Indices: 69542--69613 Score: 65
Period size: 15 Copynumber: 4.8 Consensus size: 15
69532 AACGATCCGA
69542 CACGTGACGCTC-GG
1 CACGTGACGCTCTGG
* * * *
69556 TCACGGGACGGTCCGT
1 -CACGTGACGCTCTGG
* * *
69572 CATGTGACGATCTGA
1 CACGTGACGCTCTGG
69587 CACGTGACGCTCTGG
1 CACGTGACGCTCTGG
69602 CACGTGACGCTC
1 CACGTGACGCTC
69614 CACCCGCTCC
Statistics
Matches: 45, Mismatches: 11, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
15 44 0.98
16 1 0.02
ACGTcount: A:0.17, C:0.32, G:0.32, T:0.19
Consensus pattern (15 bp):
CACGTGACGCTCTGG
Left flanking sequence: Indices 69042 -- 69541
GACCCGTTGGACAGCAACTGGTTCTTGCCCGGGGTGCCCAACAAAAGCAGGTTGGTCGAGGTGAG
CGGGGTGATCTCCCCGTGGGGGAGGTCGTCGACGTCGTCGTCGTCGGAATTGTTGATGAAAAGCC
CCCCCACCAGCAACGAGGTGTCGGGCAGCTGCGTCGAGTCAAACGACATGAACGACGTGTCGGCG
TGGTTGGGGGTGATGGTGGACACGCTCGCCTGCAGCTCCTTCTTGGCGAGCCCAGAGCTGCGCCG
CACCACCAGTGCCTGCAGCAGCACCCGCTTCAGGAGCCGTCGCAGGTCCCGCGGCGGGATCCCGT
CCTGCGACGACGCCAGCCCGCGCAGCAGCACCAGCAACGGCAGCGCCAGGGCCGCGCGGTGGACG
TCCAGCCGCGCCAGCAGCAGTGCCAGGCCCACCAGCGGTGCCAGCGACGCCACCAGCGGCGCCCG
CACCGGCAGCGGCTTGGTCGCCGGGCGCTCCACAGAACGATCCGA
Right flanking sequence: Indices 69614 -- 70113
CACCCGCTCCGTCTTGGGCAGGCCCCGTGGCAGCCGCAACAACAGGCTCTGGTCGCCAAACAACT
CGTCGATGCGCGAGTTGCGGCGGGGCGTGCCGCCCAACAGCTCGCGGCGCAGCTTGGGCTCCGTC
GCTGCCCCCGTCGCTGCCACCGTCGCCACCGTCGCCACCGGAGCGTCGCCCTGCTCGGCCGTGAG
CTCGCGGATCTCGTTGCGGGCCTTGCGGAGCTTTTCCAAGCGCTTGCGGCGGTCGTCGCGGCCCG
GGTCGGGCTTCGCCTCGGGGGCCGGCAGCAGCAGCAGGATGGTGTCGTTCAACAGGTCGCTCCCG
TAGTCGTGCTCCAACTGCTCCTGGATGTCCAGGGTCATTTTCGTGAGCCGCTCGAGGATCACCAG
CCGCCGCAACTGCTGCAAGTTGTTGGGCATGTCCGGGCCCAGCGGCAGCTCGGGCAGCCGCTTGA
ACGGGGCCTGGCGCACCGGGGGCGTGTCTGGCGAGAACAGCCCGA
Found at i:69756 original size:12 final size:12
Alignment explanation
Indices: 69739--69769 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
69729 AGCTTGGGCT
*
69739 CCGTCGCTGCCC
1 CCGTCGCTGCCA
69751 CCGTCGCTGCCA
1 CCGTCGCTGCCA
69763 CCGTCGC
1 CCGTCGC
69770 CACCGTCGCC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.03, C:0.55, G:0.26, T:0.16
Consensus pattern (12 bp):
CCGTCGCTGCCA
Left flanking sequence: Indices 69239 -- 69738
GTTGGGGGTGATGGTGGACACGCTCGCCTGCAGCTCCTTCTTGGCGAGCCCAGAGCTGCGCCGCA
CCACCAGTGCCTGCAGCAGCACCCGCTTCAGGAGCCGTCGCAGGTCCCGCGGCGGGATCCCGTCC
TGCGACGACGCCAGCCCGCGCAGCAGCACCAGCAACGGCAGCGCCAGGGCCGCGCGGTGGACGTC
CAGCCGCGCCAGCAGCAGTGCCAGGCCCACCAGCGGTGCCAGCGACGCCACCAGCGGCGCCCGCA
CCGGCAGCGGCTTGGTCGCCGGGCGCTCCACAGAACGATCCGACACGTGACGCTCGGTCACGGGA
CGGTCCGTCATGTGACGATCTGACACGTGACGCTCTGGCACGTGACGCTCCACCCGCTCCGTCTT
GGGCAGGCCCCGTGGCAGCCGCAACAACAGGCTCTGGTCGCCAAACAACTCGTCGATGCGCGAGT
TGCGGCGGGGCGTGCCGCCCAACAGCTCGCGGCGCAGCTTGGGCT
Right flanking sequence: Indices 69770 -- 70269
CACCGTCGCCACCGGAGCGTCGCCCTGCTCGGCCGTGAGCTCGCGGATCTCGTTGCGGGCCTTGC
GGAGCTTTTCCAAGCGCTTGCGGCGGTCGTCGCGGCCCGGGTCGGGCTTCGCCTCGGGGGCCGGC
AGCAGCAGCAGGATGGTGTCGTTCAACAGGTCGCTCCCGTAGTCGTGCTCCAACTGCTCCTGGAT
GTCCAGGGTCATTTTCGTGAGCCGCTCGAGGATCACCAGCCGCCGCAACTGCTGCAAGTTGTTGG
GCATGTCCGGGCCCAGCGGCAGCTCGGGCAGCCGCTTGAACGGGGCCTGGCGCACCGGGGGCGTG
TCTGGCGAGAACAGCCCGATCAGCGACGCGTCCGGGTGGTCTGGGTGGTCCGGACGCGGCCCCGA
CGAGCCCAGCGCCGCCACGCTGGGCACGCTCACCATCAGCCCGTCCACCAGCAGCCGCCGCAGCA
GCACCAGCCCGTCCATCAGCGTGCGGCGGGTGGCGTGGGTGCGCG
Found at i:69773 original size:9 final size:9
Alignment explanation
Indices: 69759--69783 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
69749 CCCCGTCGCT
69759 GCCACCGTC
1 GCCACCGTC
69768 GCCACCGTC
1 GCCACCGTC
69777 GCCACCG
1 GCCACCG
69784 GAGCGTCGCC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.12, C:0.56, G:0.24, T:0.08
Consensus pattern (9 bp):
GCCACCGTC
Left flanking sequence: Indices 69259 -- 69758
CGCTCGCCTGCAGCTCCTTCTTGGCGAGCCCAGAGCTGCGCCGCACCACCAGTGCCTGCAGCAGC
ACCCGCTTCAGGAGCCGTCGCAGGTCCCGCGGCGGGATCCCGTCCTGCGACGACGCCAGCCCGCG
CAGCAGCACCAGCAACGGCAGCGCCAGGGCCGCGCGGTGGACGTCCAGCCGCGCCAGCAGCAGTG
CCAGGCCCACCAGCGGTGCCAGCGACGCCACCAGCGGCGCCCGCACCGGCAGCGGCTTGGTCGCC
GGGCGCTCCACAGAACGATCCGACACGTGACGCTCGGTCACGGGACGGTCCGTCATGTGACGATC
TGACACGTGACGCTCTGGCACGTGACGCTCCACCCGCTCCGTCTTGGGCAGGCCCCGTGGCAGCC
GCAACAACAGGCTCTGGTCGCCAAACAACTCGTCGATGCGCGAGTTGCGGCGGGGCGTGCCGCCC
AACAGCTCGCGGCGCAGCTTGGGCTCCGTCGCTGCCCCCGTCGCT
Right flanking sequence: Indices 69784 -- 70283
GAGCGTCGCCCTGCTCGGCCGTGAGCTCGCGGATCTCGTTGCGGGCCTTGCGGAGCTTTTCCAAG
CGCTTGCGGCGGTCGTCGCGGCCCGGGTCGGGCTTCGCCTCGGGGGCCGGCAGCAGCAGCAGGAT
GGTGTCGTTCAACAGGTCGCTCCCGTAGTCGTGCTCCAACTGCTCCTGGATGTCCAGGGTCATTT
TCGTGAGCCGCTCGAGGATCACCAGCCGCCGCAACTGCTGCAAGTTGTTGGGCATGTCCGGGCCC
AGCGGCAGCTCGGGCAGCCGCTTGAACGGGGCCTGGCGCACCGGGGGCGTGTCTGGCGAGAACAG
CCCGATCAGCGACGCGTCCGGGTGGTCTGGGTGGTCCGGACGCGGCCCCGACGAGCCCAGCGCCG
CCACGCTGGGCACGCTCACCATCAGCCCGTCCACCAGCAGCCGCCGCAGCAGCACCAGCCCGTCC
ATCAGCGTGCGGCGGGTGGCGTGGGTGCGCGGGTGCACCGCGGCC
Found at i:73062 original size:17 final size:16
Alignment explanation
Indices: 73029--73078 Score: 75
Period size: 17 Copynumber: 3.1 Consensus size: 16
73019 GAGCAGGCAG
73029 CGAAGGAGAAAAAGAA
1 CGAAGGAGAAAAAGAA
*
73045 CGAAGGAGGAAGAAGAA
1 CGAAGGA-GAAAAAGAA
73062 CGAA-GAGAAAAAGAA
1 CGAAGGAGAAAAAGAA
73077 CG
1 CG
73079 GAAAGGATGA
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
15 10 0.32
16 9 0.29
17 12 0.39
ACGTcount: A:0.58, C:0.08, G:0.34, T:0.00
Consensus pattern (16 bp):
CGAAGGAGAAAAAGAA
Left flanking sequence: Indices 72529 -- 73028
GAAATTACCCCGCGTATTGTCGGTCATTCTGTCCTGCAGGATGGCGTGATGTGGTGGGGCGTCCC
CCATAAAAAGCATCGCCAATCTGGGGAAAAACGAAAAAGCCATGTACGACGATGACCGCGACGTC
AGCGATGTGATGCTGACCACCCTGAAGTTCCTGCTCTTTTCTCGGGTCAAGCGCACGTCGACCAA
CCTGAGCTACTCCCTGTACAATCCCGACGCGCCCCGGTCACAAAAGGGCAACAAGTACGTGGTGA
AGCGGGTTCCCTACAACATTTTCAGTCGTGGGGTGCCCAAGGGCCGAGACGACGAGTAGGCGAGG
CTGGCCGTGGCGACGAGTAGGCGAGGCATAGCGAGCCGGTCTCATTATGTGAATAATACCCAGTT
AATAGTGAATGGTTAATGACTAAGTGATTGTTCGGGCAAGGGGAAGATTGCTGAGAAGAGGTGGA
GGAAGAGAACGTAGACGAGCAGCAAACGTAGAGACGAGCAGGCAG
Right flanking sequence: Indices 73079 -- 73578
GAAAGGATGAACAGAGCAGCCAGGCTTCCATCAGTTTCCACTTACTTTGGTTTCCACTGACTTTA
CGAGTCGGTGTTAAATGCCGCAAAATAAGGTTCAATGCATGGGATTTAAACTCGTCTAAAACGAT
GGAGATAGCGGGTGCATTGGGCGTTGGTAGAGGGTGGGGATATGTATCGGTGGTTTGGTGATCGG
TGATCGGTGATCGGTGTTCGGTGGTTCGGTGATCGGTGTATAGGTGTATCGGTGAACCGGTGGAA
CGAAGTGTTCGGGTTACAGGAGACGTTCTGGGGCGCGAGGCTAGCTCGATTAGCGCATTATACGC
AGACCAGAAACACGCCAAGCCGCTCGGGCCGAGTCAAATAGCGAAGTGCTGCGACTCCACTGGTG
CTACCTGCACTTGTGTGTCGCGTACCTAGCCAGGCTATGCGAGGGTGGGTGCAAACGGGCTGGCG
ACCAATGATAAATACGCTCCTTAAAGAGAGCGCAGAAACAACGCG
Found at i:73133 original size:16 final size:16
Alignment explanation
Indices: 73112--73142 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
73102 GCTTCCATCA
*
73112 GTTTCCACTTACTTTG
1 GTTTCCACTGACTTTG
73128 GTTTCCACTGACTTT
1 GTTTCCACTGACTTT
73143 ACGAGTCGGT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.13, C:0.26, G:0.13, T:0.48
Consensus pattern (16 bp):
GTTTCCACTGACTTTG
Left flanking sequence: Indices 72612 -- 73111
ATCTGGGGAAAAACGAAAAAGCCATGTACGACGATGACCGCGACGTCAGCGATGTGATGCTGACC
ACCCTGAAGTTCCTGCTCTTTTCTCGGGTCAAGCGCACGTCGACCAACCTGAGCTACTCCCTGTA
CAATCCCGACGCGCCCCGGTCACAAAAGGGCAACAAGTACGTGGTGAAGCGGGTTCCCTACAACA
TTTTCAGTCGTGGGGTGCCCAAGGGCCGAGACGACGAGTAGGCGAGGCTGGCCGTGGCGACGAGT
AGGCGAGGCATAGCGAGCCGGTCTCATTATGTGAATAATACCCAGTTAATAGTGAATGGTTAATG
ACTAAGTGATTGTTCGGGCAAGGGGAAGATTGCTGAGAAGAGGTGGAGGAAGAGAACGTAGACGA
GCAGCAAACGTAGAGACGAGCAGGCAGCGAAGGAGAAAAAGAACGAAGGAGGAAGAAGAACGAAG
AGAAAAAGAACGGAAAGGATGAACAGAGCAGCCAGGCTTCCATCA
Right flanking sequence: Indices 73143 -- 73642
ACGAGTCGGTGTTAAATGCCGCAAAATAAGGTTCAATGCATGGGATTTAAACTCGTCTAAAACGA
TGGAGATAGCGGGTGCATTGGGCGTTGGTAGAGGGTGGGGATATGTATCGGTGGTTTGGTGATCG
GTGATCGGTGATCGGTGTTCGGTGGTTCGGTGATCGGTGTATAGGTGTATCGGTGAACCGGTGGA
ACGAAGTGTTCGGGTTACAGGAGACGTTCTGGGGCGCGAGGCTAGCTCGATTAGCGCATTATACG
CAGACCAGAAACACGCCAAGCCGCTCGGGCCGAGTCAAATAGCGAAGTGCTGCGACTCCACTGGT
GCTACCTGCACTTGTGTGTCGCGTACCTAGCCAGGCTATGCGAGGGTGGGTGCAAACGGGCTGGC
GACCAATGATAAATACGCTCCTTAAAGAGAGCGCAGAAACAACGCGCCGGTGCTGCGTGTTGCCA
ACCACCTCTATTGGCGTTCGGGTATAGATGCCTGAAACAAGCAAC
Found at i:73277 original size:7 final size:7
Alignment explanation
Indices: 73265--73328 Score: 74
Period size: 7 Copynumber: 8.7 Consensus size: 7
73255 TCGGTGGTTT
73265 GGTGATC
1 GGTGATC
73272 GGTGATC
1 GGTGATC
73279 GGTGATC
1 GGTGATC
*
73286 GGTGTTC
1 GGTGATC
*
73293 GGTGGTTC
1 GGT-GATC
73301 GGTGATC
1 GGTGATC
*
73308 GGTGTATA
1 GGTG-ATC
73316 GGTGTATC
1 GGTG-ATC
73324 GGTGA
1 GGTGA
73329 ACCGGTGGAA
Statistics
Matches: 51, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
7 31 0.61
8 20 0.39
ACGTcount: A:0.12, C:0.11, G:0.44, T:0.33
Consensus pattern (7 bp):
GGTGATC
Left flanking sequence: Indices 72765 -- 73264
AAAAGGGCAACAAGTACGTGGTGAAGCGGGTTCCCTACAACATTTTCAGTCGTGGGGTGCCCAAG
GGCCGAGACGACGAGTAGGCGAGGCTGGCCGTGGCGACGAGTAGGCGAGGCATAGCGAGCCGGTC
TCATTATGTGAATAATACCCAGTTAATAGTGAATGGTTAATGACTAAGTGATTGTTCGGGCAAGG
GGAAGATTGCTGAGAAGAGGTGGAGGAAGAGAACGTAGACGAGCAGCAAACGTAGAGACGAGCAG
GCAGCGAAGGAGAAAAAGAACGAAGGAGGAAGAAGAACGAAGAGAAAAAGAACGGAAAGGATGAA
CAGAGCAGCCAGGCTTCCATCAGTTTCCACTTACTTTGGTTTCCACTGACTTTACGAGTCGGTGT
TAAATGCCGCAAAATAAGGTTCAATGCATGGGATTTAAACTCGTCTAAAACGATGGAGATAGCGG
GTGCATTGGGCGTTGGTAGAGGGTGGGGATATGTATCGGTGGTTT
Right flanking sequence: Indices 73329 -- 73828
ACCGGTGGAACGAAGTGTTCGGGTTACAGGAGACGTTCTGGGGCGCGAGGCTAGCTCGATTAGCG
CATTATACGCAGACCAGAAACACGCCAAGCCGCTCGGGCCGAGTCAAATAGCGAAGTGCTGCGAC
TCCACTGGTGCTACCTGCACTTGTGTGTCGCGTACCTAGCCAGGCTATGCGAGGGTGGGTGCAAA
CGGGCTGGCGACCAATGATAAATACGCTCCTTAAAGAGAGCGCAGAAACAACGCGCCGGTGCTGC
GTGTTGCCAACCACCTCTATTGGCGTTCGGGTATAGATGCCTGAAACAAGCAACGGTAATGTCGG
CCTGGCGTTGGGTTGACAATGCACCGGTTCCACCACCAGAAGAGGCTAAGCCCAGCACACTCATG
CACGACGGGTACGTTCCCGTGAGCAATCGATTGCGACCGCTATCTCCGCCAGCGTTATCAGCACC
ATCGCTCGATACCACGGCAGGTCGAATCAGCTCACAATGACAGGC
Found at i:73284 original size:14 final size:14
Alignment explanation
Indices: 73265--73328 Score: 74
Period size: 15 Copynumber: 4.4 Consensus size: 14
73255 TCGGTGGTTT
73265 GGTGATCGGTGATC
1 GGTGATCGGTGATC
*
73279 GGTGATCGGTGTTC
1 GGTGATCGGTGATC
*
73293 GGTGGTTCGGTGATC
1 GGT-GATCGGTGATC
*
73308 GGTGTATAGGTGTATC
1 GGTG-ATCGGTG-ATC
73324 GGTGA
1 GGTGA
73329 ACCGGTGGAA
Statistics
Matches: 42, Mismatches: 5, Indels: 5
0.81 0.10 0.10
Matches are distributed among these distances:
14 17 0.40
15 18 0.43
16 7 0.17
ACGTcount: A:0.12, C:0.11, G:0.44, T:0.33
Consensus pattern (14 bp):
GGTGATCGGTGATC
Left flanking sequence: Indices 72765 -- 73264
AAAAGGGCAACAAGTACGTGGTGAAGCGGGTTCCCTACAACATTTTCAGTCGTGGGGTGCCCAAG
GGCCGAGACGACGAGTAGGCGAGGCTGGCCGTGGCGACGAGTAGGCGAGGCATAGCGAGCCGGTC
TCATTATGTGAATAATACCCAGTTAATAGTGAATGGTTAATGACTAAGTGATTGTTCGGGCAAGG
GGAAGATTGCTGAGAAGAGGTGGAGGAAGAGAACGTAGACGAGCAGCAAACGTAGAGACGAGCAG
GCAGCGAAGGAGAAAAAGAACGAAGGAGGAAGAAGAACGAAGAGAAAAAGAACGGAAAGGATGAA
CAGAGCAGCCAGGCTTCCATCAGTTTCCACTTACTTTGGTTTCCACTGACTTTACGAGTCGGTGT
TAAATGCCGCAAAATAAGGTTCAATGCATGGGATTTAAACTCGTCTAAAACGATGGAGATAGCGG
GTGCATTGGGCGTTGGTAGAGGGTGGGGATATGTATCGGTGGTTT
Right flanking sequence: Indices 73329 -- 73828
ACCGGTGGAACGAAGTGTTCGGGTTACAGGAGACGTTCTGGGGCGCGAGGCTAGCTCGATTAGCG
CATTATACGCAGACCAGAAACACGCCAAGCCGCTCGGGCCGAGTCAAATAGCGAAGTGCTGCGAC
TCCACTGGTGCTACCTGCACTTGTGTGTCGCGTACCTAGCCAGGCTATGCGAGGGTGGGTGCAAA
CGGGCTGGCGACCAATGATAAATACGCTCCTTAAAGAGAGCGCAGAAACAACGCGCCGGTGCTGC
GTGTTGCCAACCACCTCTATTGGCGTTCGGGTATAGATGCCTGAAACAAGCAACGGTAATGTCGG
CCTGGCGTTGGGTTGACAATGCACCGGTTCCACCACCAGAAGAGGCTAAGCCCAGCACACTCATG
CACGACGGGTACGTTCCCGTGAGCAATCGATTGCGACCGCTATCTCCGCCAGCGTTATCAGCACC
ATCGCTCGATACCACGGCAGGTCGAATCAGCTCACAATGACAGGC
Found at i:73287 original size:29 final size:29
Alignment explanation
Indices: 73254--73327 Score: 87
Period size: 29 Copynumber: 2.5 Consensus size: 29
73244 GGGGATATGT
*
73254 ATCGGTGGTTTGGT-GATCGGTGATCGGTG
1 ATCGGT-GTTCGGTGGATCGGTGATCGGTG
*
73283 ATCGGTGTTCGGTGGTTCGGTGATCGGTG
1 ATCGGTGTTCGGTGGATCGGTGATCGGTG
*
73312 TATAGGTGTATCGGTG
1 -ATCGGTGT-TCGGTG
73328 AACCGGTGGA
Statistics
Matches: 39, Mismatches: 3, Indels: 4
0.85 0.07 0.09
Matches are distributed among these distances:
28 6 0.15
29 20 0.51
30 7 0.18
31 6 0.15
ACGTcount: A:0.11, C:0.11, G:0.43, T:0.35
Consensus pattern (29 bp):
ATCGGTGTTCGGTGGATCGGTGATCGGTG
Left flanking sequence: Indices 72754 -- 73253
GCCCCGGTCACAAAAGGGCAACAAGTACGTGGTGAAGCGGGTTCCCTACAACATTTTCAGTCGTG
GGGTGCCCAAGGGCCGAGACGACGAGTAGGCGAGGCTGGCCGTGGCGACGAGTAGGCGAGGCATA
GCGAGCCGGTCTCATTATGTGAATAATACCCAGTTAATAGTGAATGGTTAATGACTAAGTGATTG
TTCGGGCAAGGGGAAGATTGCTGAGAAGAGGTGGAGGAAGAGAACGTAGACGAGCAGCAAACGTA
GAGACGAGCAGGCAGCGAAGGAGAAAAAGAACGAAGGAGGAAGAAGAACGAAGAGAAAAAGAACG
GAAAGGATGAACAGAGCAGCCAGGCTTCCATCAGTTTCCACTTACTTTGGTTTCCACTGACTTTA
CGAGTCGGTGTTAAATGCCGCAAAATAAGGTTCAATGCATGGGATTTAAACTCGTCTAAAACGAT
GGAGATAGCGGGTGCATTGGGCGTTGGTAGAGGGTGGGGATATGT
Right flanking sequence: Indices 73328 -- 73827
AACCGGTGGAACGAAGTGTTCGGGTTACAGGAGACGTTCTGGGGCGCGAGGCTAGCTCGATTAGC
GCATTATACGCAGACCAGAAACACGCCAAGCCGCTCGGGCCGAGTCAAATAGCGAAGTGCTGCGA
CTCCACTGGTGCTACCTGCACTTGTGTGTCGCGTACCTAGCCAGGCTATGCGAGGGTGGGTGCAA
ACGGGCTGGCGACCAATGATAAATACGCTCCTTAAAGAGAGCGCAGAAACAACGCGCCGGTGCTG
CGTGTTGCCAACCACCTCTATTGGCGTTCGGGTATAGATGCCTGAAACAAGCAACGGTAATGTCG
GCCTGGCGTTGGGTTGACAATGCACCGGTTCCACCACCAGAAGAGGCTAAGCCCAGCACACTCAT
GCACGACGGGTACGTTCCCGTGAGCAATCGATTGCGACCGCTATCTCCGCCAGCGTTATCAGCAC
CATCGCTCGATACCACGGCAGGTCGAATCAGCTCACAATGACAGG
Found at i:73305 original size:36 final size:38
Alignment explanation
Indices: 73255--73327 Score: 114
Period size: 36 Copynumber: 2.0 Consensus size: 38
73245 GGGATATGTA
* *
73255 TCGGTGGTTTGGTGATCGGTG-ATCGGTG-ATCGGTGT
1 TCGGTGGTTCGGTGATCGGTGTATAGGTGTATCGGTGT
73291 TCGGTGGTTCGGTGATCGGTGTATAGGTGTATCGGTG
1 TCGGTGGTTCGGTGATCGGTGTATAGGTGTATCGGTG
73328 AACCGGTGGA
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
36 20 0.61
37 6 0.18
38 7 0.21
ACGTcount: A:0.10, C:0.11, G:0.44, T:0.36
Consensus pattern (38 bp):
TCGGTGGTTCGGTGATCGGTGTATAGGTGTATCGGTGT
Left flanking sequence: Indices 72755 -- 73254
CCCCGGTCACAAAAGGGCAACAAGTACGTGGTGAAGCGGGTTCCCTACAACATTTTCAGTCGTGG
GGTGCCCAAGGGCCGAGACGACGAGTAGGCGAGGCTGGCCGTGGCGACGAGTAGGCGAGGCATAG
CGAGCCGGTCTCATTATGTGAATAATACCCAGTTAATAGTGAATGGTTAATGACTAAGTGATTGT
TCGGGCAAGGGGAAGATTGCTGAGAAGAGGTGGAGGAAGAGAACGTAGACGAGCAGCAAACGTAG
AGACGAGCAGGCAGCGAAGGAGAAAAAGAACGAAGGAGGAAGAAGAACGAAGAGAAAAAGAACGG
AAAGGATGAACAGAGCAGCCAGGCTTCCATCAGTTTCCACTTACTTTGGTTTCCACTGACTTTAC
GAGTCGGTGTTAAATGCCGCAAAATAAGGTTCAATGCATGGGATTTAAACTCGTCTAAAACGATG
GAGATAGCGGGTGCATTGGGCGTTGGTAGAGGGTGGGGATATGTA
Right flanking sequence: Indices 73328 -- 73827
AACCGGTGGAACGAAGTGTTCGGGTTACAGGAGACGTTCTGGGGCGCGAGGCTAGCTCGATTAGC
GCATTATACGCAGACCAGAAACACGCCAAGCCGCTCGGGCCGAGTCAAATAGCGAAGTGCTGCGA
CTCCACTGGTGCTACCTGCACTTGTGTGTCGCGTACCTAGCCAGGCTATGCGAGGGTGGGTGCAA
ACGGGCTGGCGACCAATGATAAATACGCTCCTTAAAGAGAGCGCAGAAACAACGCGCCGGTGCTG
CGTGTTGCCAACCACCTCTATTGGCGTTCGGGTATAGATGCCTGAAACAAGCAACGGTAATGTCG
GCCTGGCGTTGGGTTGACAATGCACCGGTTCCACCACCAGAAGAGGCTAAGCCCAGCACACTCAT
GCACGACGGGTACGTTCCCGTGAGCAATCGATTGCGACCGCTATCTCCGCCAGCGTTATCAGCAC
CATCGCTCGATACCACGGCAGGTCGAATCAGCTCACAATGACAGG
Found at i:78559 original size:9 final size:9
Alignment explanation
Indices: 78545--78572 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
78535 CACGCTCATG
78545 CAAACTACT
1 CAAACTACT
78554 CAAACTACT
1 CAAACTACT
78563 CAAACTACT
1 CAAACTACT
78572 C
1 C
78573 CGAGCTACCC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.43, C:0.36, G:0.00, T:0.21
Consensus pattern (9 bp):
CAAACTACT
Left flanking sequence: Indices 78045 -- 78544
CAACTAACGTCCACTACTTAGCCGGTGGAACAGAAACAAGGTGGATCCACCCAATTGAATTTTCC
ACGATGACCGTGTCGGACTATGGGTGGCAGTCAATTGCCTTGAAATTACGAGTTTTCCCGTGTCA
CCGACTGAGCCACTAAGAAAATCGAGACACACTCGGGTTTTAGCAGCGGTATACGCGTCTTATGG
GATGAAATGCCAACCCACCTAGGGCATGTGATGAACTCCTGACCAGCAGTACTGAGGGTTCGTTC
GTGCAGAACGGGCTCGATACTCACAACCTGGTATGAGCCTCGGAACCCTCCACCACACCTTCATC
TACGGCAAAGTGGCGGCCAAGCAGCCTGGTTCTTCAGCCTTAACTGCCCATGTGCGCCTACAGGG
GTCATGGCCGACTCGATTGGCTCCGATCTAACCCCACAAACGCACATGAGATCGTCGCTTAAGGT
TTCCGATCTGAGCTGACGCCCTTTGCCATTTCAATCACGCTCATG
Right flanking sequence: Indices 78573 -- 79072
CGAGCTACCCCTCACTGCTCATTATTTAGAGATCGCCTGGAGTGAAACGCTAATCATCCCACCAC
CATGCATACCCCACTCCGCTTACACATACTCGATCCTATTGGGCGTACCCACCTGTATTATTCTA
GAAAACAAACACCTGGTCGCCGTGCTTAGACACAGGCTTCGCCTTGGGGAACCCCAACTCCACCG
CCGCCTTCTTCATCGCCGAGATCATCGGGGGAGGCCCGCACAACAACAAGTTGGTGGTCTCACTG
GCCAGAGGCAAGTGGGTCTGCATGATCTCGGGGGTCACGAACCCGGTGGAGCCCGTCCACTCCGC
AGGAGCCTCGTTCAACACGTAGTGGACCTTGAACTGCTCAGGGTGCTCGGCAGCCAACTTGTCCA
ACTCCGCCTTCAACAAAATGTCCTGCTCGGTGACGTTGGCGTACACCAACGAGATCTTCAGCTTG
TCCTCGGGGTTCTTGAGCACGGCGGTGATGATCTGGTACATGGGG
Found at i:79920 original size:14 final size:14
Alignment explanation
Indices: 79901--79928 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
79891 CCCTGTAGAA
79901 TGGTAGGGCCATTG
1 TGGTAGGGCCATTG
79915 TGGTAGGGCCATTG
1 TGGTAGGGCCATTG
79929 GTGTGGAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.14, C:0.14, G:0.43, T:0.29
Consensus pattern (14 bp):
TGGTAGGGCCATTG
Left flanking sequence: Indices 79401 -- 79900
TTTTCTGGATCAACGGGAACTTTTGGAACTCGTCGGGCTTGAGCACCGGGGCGTTCAGCTTCTTG
GCCTGCTGGAAGAAGTAGAACGCCACGAACGAGCCGATAATCGCGGCAATGGTGGCGAAAACGAT
CAAGGGGTTGGGTTCGTCAGACATGTCGTGGAAGTTTTTTCTTTGGGCTTGTGAATTTGTCGCGA
AAATCAGCCGATGATTTATACGGTCGCGATCGGTGCATATGATCGGGCCAACGGTTGTGTAGTGG
AGGGGGAAAGGGGTCGGGTGGAAGGGTGGAGGGGCGTAGGGGTGGCTGAGGTGGCTATGGTAGAG
GTGGTGGTTATGGTGGTGGTTTCCAGAGGTGTTGGTGTAATGGTGGGTGGGGAACAACGGGTGAT
CACATTCCGTAGATCGGGTTAGACGAGCCAGCAATGATTGGTTGCTGGAGGCTTGCGGGTGGTGT
GAGCCCGATTGTGGGAGGTGTGTGAATTGAAGGTGCCCTGTAGAA
Right flanking sequence: Indices 79929 -- 80428
GTGTGGAAAACCACATAGCCCTAGACGACTAAGACTACGATTAAAGCTACGATTAAACGCGTGAT
TTTGTTCACGTTGAAACTCTCTTCACGACCATCGTCTAAGTCTTCACGTCTACACCCTACTGCCT
TCACCTATACCTACTATTTTGTTACCGTTCATCCCTTCATAAGTAATCTATTCCTTTTCTTCCTT
CTCTCGTCCTCCTTCACTGCGTCTAAGCCTTCACCTATACCTACTATGCTGTTACCGTTCCTATC
CATTCATAAATAATCTATTCCTTTTCTCCTTCCTTCTCTTCCTTCTCTTCCTTCTTTTCCTTCTC
GTCCTTCTCTTCCTCCTTCTCGTCAGTGTCCTTGACGTTCCACTGGCACGACACGTCCCACCGCA
GGCCTCGAGCATTAATACTCACGTACTTGACAAACTTGAGCACGGTGGGGTCCCGCAACATCAAC
GTCAAGCTGTTCCACGAGCACTGGCTCAGATACAACACCAGGTCG
Found at i:80223 original size:12 final size:13
Alignment explanation
Indices: 80215--80274 Score: 54
Period size: 13 Copynumber: 4.6 Consensus size: 13
80205 ATTCCTTTTC
80215 TCCTTC-CTTCTCT
1 TCCTTCTCTTC-CT
80228 TCCTTCTCTTCCT
1 TCCTTCTCTTCCT
* *
80241 T-CTTTTCCTTCTCG
1 TCCTTCT-CTTC-CT
80255 TCCTTCTCTTCC-
1 TCCTTCTCTTCCT
80267 TCCTTCTC
1 TCCTTCTC
80275 GTCAGTGTCC
Statistics
Matches: 40, Mismatches: 3, Indels: 9
0.77 0.06 0.17
Matches are distributed among these distances:
12 12 0.30
13 14 0.35
14 10 0.25
15 4 0.10
ACGTcount: A:0.00, C:0.45, G:0.02, T:0.53
Consensus pattern (13 bp):
TCCTTCTCTTCCT
Left flanking sequence: Indices 79715 -- 80214
CTATGGTAGAGGTGGTGGTTATGGTGGTGGTTTCCAGAGGTGTTGGTGTAATGGTGGGTGGGGAA
CAACGGGTGATCACATTCCGTAGATCGGGTTAGACGAGCCAGCAATGATTGGTTGCTGGAGGCTT
GCGGGTGGTGTGAGCCCGATTGTGGGAGGTGTGTGAATTGAAGGTGCCCTGTAGAATGGTAGGGC
CATTGTGGTAGGGCCATTGGTGTGGAAAACCACATAGCCCTAGACGACTAAGACTACGATTAAAG
CTACGATTAAACGCGTGATTTTGTTCACGTTGAAACTCTCTTCACGACCATCGTCTAAGTCTTCA
CGTCTACACCCTACTGCCTTCACCTATACCTACTATTTTGTTACCGTTCATCCCTTCATAAGTAA
TCTATTCCTTTTCTTCCTTCTCTCGTCCTCCTTCACTGCGTCTAAGCCTTCACCTATACCTACTA
TGCTGTTACCGTTCCTATCCATTCATAAATAATCTATTCCTTTTC
Right flanking sequence: Indices 80275 -- 80774
GTCAGTGTCCTTGACGTTCCACTGGCACGACACGTCCCACCGCAGGCCTCGAGCATTAATACTCA
CGTACTTGACAAACTTGAGCACGGTGGGGTCCCGCAACATCAACGTCAAGCTGTTCCACGAGCAC
TGGCTCAGATACAACACCAGGTCGTCCCCCAGCAGCTGCTGGTACACCGCCGGGTCGTCGTCCTC
CTCGAACTCCTCGGGACGCGCCATACATAGCTCGTAGCCCCCAAACTCGCCCAGCGCCCACGTCT
TGTCGTTGTAGGCGGTGGGGGTGAGGTTGAGAGTGGCCTCCAACAACGCGTTCACCTCCAGCCCG
CGGGCCAACTCGCGGTCGGTGGGCGTGGCTAGGATAAAGTCGTGGCCGGGCCGGAACCGTCTCAC
CAACACCTGTTCCGAGGTGGTGACGAGCGCCGTCACCTGGGCCAACCACTTCTTGAACGCGAGCG
AGGTGATGAACTTGGCCACGTCCACCAACTCGGAGTCGGCCCCGT
Found at i:80231 original size:9 final size:9
Alignment explanation
Indices: 80212--80267 Score: 85
Period size: 9 Copynumber: 6.1 Consensus size: 9
80202 TCTATTCCTT
80212 TTCTCCTTCC
1 TTCT-CTTCC
80222 TTCTCTTCC
1 TTCTCTTCC
80231 TTCTCTTCC
1 TTCTCTTCC
*
80240 TTCTTTTCC
1 TTCTCTTCC
*
80249 TTCTCGTCC
1 TTCTCTTCC
80258 TTCTCTTCC
1 TTCTCTTCC
80267 T
1 T
80268 CCTTCTCGTC
Statistics
Matches: 42, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
9 38 0.90
10 4 0.10
ACGTcount: A:0.00, C:0.43, G:0.02, T:0.55
Consensus pattern (9 bp):
TTCTCTTCC
Left flanking sequence: Indices 79712 -- 80211
TGGCTATGGTAGAGGTGGTGGTTATGGTGGTGGTTTCCAGAGGTGTTGGTGTAATGGTGGGTGGG
GAACAACGGGTGATCACATTCCGTAGATCGGGTTAGACGAGCCAGCAATGATTGGTTGCTGGAGG
CTTGCGGGTGGTGTGAGCCCGATTGTGGGAGGTGTGTGAATTGAAGGTGCCCTGTAGAATGGTAG
GGCCATTGTGGTAGGGCCATTGGTGTGGAAAACCACATAGCCCTAGACGACTAAGACTACGATTA
AAGCTACGATTAAACGCGTGATTTTGTTCACGTTGAAACTCTCTTCACGACCATCGTCTAAGTCT
TCACGTCTACACCCTACTGCCTTCACCTATACCTACTATTTTGTTACCGTTCATCCCTTCATAAG
TAATCTATTCCTTTTCTTCCTTCTCTCGTCCTCCTTCACTGCGTCTAAGCCTTCACCTATACCTA
CTATGCTGTTACCGTTCCTATCCATTCATAAATAATCTATTCCTT
Right flanking sequence: Indices 80268 -- 80767
CCTTCTCGTCAGTGTCCTTGACGTTCCACTGGCACGACACGTCCCACCGCAGGCCTCGAGCATTA
ATACTCACGTACTTGACAAACTTGAGCACGGTGGGGTCCCGCAACATCAACGTCAAGCTGTTCCA
CGAGCACTGGCTCAGATACAACACCAGGTCGTCCCCCAGCAGCTGCTGGTACACCGCCGGGTCGT
CGTCCTCCTCGAACTCCTCGGGACGCGCCATACATAGCTCGTAGCCCCCAAACTCGCCCAGCGCC
CACGTCTTGTCGTTGTAGGCGGTGGGGGTGAGGTTGAGAGTGGCCTCCAACAACGCGTTCACCTC
CAGCCCGCGGGCCAACTCGCGGTCGGTGGGCGTGGCTAGGATAAAGTCGTGGCCGGGCCGGAACC
GTCTCACCAACACCTGTTCCGAGGTGGTGACGAGCGCCGTCACCTGGGCCAACCACTTCTTGAAC
GCGAGCGAGGTGATGAACTTGGCCACGTCCACCAACTCGGAGTCG
Found at i:82155 original size:15 final size:15
Alignment explanation
Indices: 82135--82168 Score: 68
Period size: 15 Copynumber: 2.3 Consensus size: 15
82125 CACAGTAGGT
82135 GGCCAGGTGGCTACG
1 GGCCAGGTGGCTACG
82150 GGCCAGGTGGCTACG
1 GGCCAGGTGGCTACG
82165 GGCC
1 GGCC
82169 CGACTCCCGG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.12, C:0.29, G:0.47, T:0.12
Consensus pattern (15 bp):
GGCCAGGTGGCTACG
Left flanking sequence: Indices 81635 -- 82134
CCACACCCCGTGACCGCCAGCACCGCGTCGCGGAACTGCTGGGAGTAGATGGCTGCCCGCAACTT
GTAGAGCGATGGGAGCCGCAGCAAATCGTTCCAGTCGAGGCCCAGCAAGTTGGCGAGGTCGCCCA
GCTGGTACACCTTGTAGATGTCGGTCTCCTTCTTGGTGAAGTGGATCTCCTCGAGCACCTCCTTG
CGTACCTGGCGGAGAAGCGTGTCGTCAAACAACTCGGAGAACGTGCCCCACCGGTAGGGCTGCGA
CTGCTGCACGGCGGTGGCGAGCTCGTGCTGGTAGCTGGGGTCCCAGATCTTGGGCTGGAACGCGT
GGGAGATCTCCTCCGGACCCATTTTGATGTCGGCCCGCTTGTTCTCCGCGGGCTCTGCCTCCGGG
CTGGTGGATCGCTTCATGGTTGGGCCCATCGATTTTTTCAGCTTTTGCGTGCATTGGCTGCAAAT
AATCATACGATAAGGTGGGACGACCCACCGGAGAACACAGTAGGT
Right flanking sequence: Indices 82169 -- 82668
CGACTCCCGGGCCAAACCGGGTCAAACCGCCTACATCGCGCCCGGTCACGGTTGTCTTGCCACCC
GACGCGGGCTCCGGATCGAATGCACCTTCGGATGCACCACCTACCGATGCGGCTGGGTCCCTGCG
CTACCCTGCCCGTCCACCAGGTCGCCCACCACCAGCGACCCCACCTCGTAAACAATGTGCCAGTG
CCAGCCCCCGACGCCTCAATGCACACCCATGCATCAGAAATGCTCGTAAATAACAAGACCGAAAC
AGCGTTCAGGCGGGGGTCAACAACCGAGATGGCAGACGAAAACATCACGTTCCAGTACGCCAACG
AGTGCGAGCTCGAGATCCACTGCCTGCCGTTCGGGCTCCTGGGGCTCTTTGTCAAGGTGGTGGGC
ACCAACCTCATGGGGATCGGGCTGACCATGGGGTTAATCACCGGCACCACCAAAGGCCGCATCCA
CTACAACGACTCCAACGACTTGATCAACCACAAATACAAACTCTA
Found at i:83217 original size:12 final size:12
Alignment explanation
Indices: 83200--83249 Score: 84
Period size: 12 Copynumber: 4.2 Consensus size: 12
83190 TGGAGAGCGA
83200 ATGTTTACAAGC
1 ATGTTTACAAGC
*
83212 ATGTTTATAAGC
1 ATGTTTACAAGC
83224 ATG-TTACAAGC
1 ATGTTTACAAGC
83235 ATGTTTACAAGC
1 ATGTTTACAAGC
83247 ATG
1 ATG
83250 GAATGTTTCG
Statistics
Matches: 35, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
11 10 0.29
12 25 0.71
ACGTcount: A:0.34, C:0.14, G:0.18, T:0.34
Consensus pattern (12 bp):
ATGTTTACAAGC
Left flanking sequence: Indices 82700 -- 83199
ATCGACTTCACCAAGATCTTCACCTTGGACGACGAGGAGCACGCCATCAAGGAACCCCCCGTGCC
GGAGAACGAGCTCCCGACGTTGATCTTCCGGGGCAAGTGTCCCGAGGGGAGGCCCGACAACGTGG
AGCCGTTTATCGGGATCTTCCTGTTTGAGAAGGAGAACCCCTAGGATGTATGTATTATAGAGGTG
CGTGGCACCACCCGGGACTGTGTCCCGCAGTTAGACCAAAAATAAACACGTCTGGTTGCGTATCT
GGCTCGGAGCGGCTCCGGGTGCGGTGAATACGAGCATTCTCGGGTCGTCATCCATTGCTGTCCCT
GGCAACAATGACGGGGAAGCTGCGATCTTCGTAAACGGGGAAGAGTCTTGGCGGGGAGGAAGGTG
GTGGGATGGTGGGTTCCTACGGTGGTGGTTTCTACGGTTAACTAGGGAGCGGTGGTGGGTACCAG
CTGGTGGTGTCTAACGATCCATCGCAGCCTACGAATGGAGAGCGA
Right flanking sequence: Indices 83250 -- 83749
GAATGTTTCGGAATGTAGCATTTACGCTAAGGGGAAAAATGTGCTCTCGTTACAATTGGAACATA
ATCGTGCCATAATCTAGAATACACGCATAACACGGGATCCGTCCACATAACACGGGATCCGTCCA
CATAACACGGGATCCGTCATACCACGGGATCCGTCTTTAGACGAGAATCACACAGATTCAAACGG
TGTCGTATCAACCATACAATACGTCCTACTCTGGTCCGTCTACCCCAACCACTCGTGACCCACCA
TTCATAATCTATAATAGTCCTAAATCGTCACTTTACGCTTCTTAAACGCCTTTTGCACGTCCCGC
CGGCGCCGCTTGCACTCAGCAGTCACCTCACCTCGCTGGGCGTAGAACCACGTCTCGTAGTCCAT
GTCCTTGTCCAGCCCGGGAAGCGCAATCGCCGCCCCCACCCCTCCGATCTGGTTGAGCTGGGTCT
GGGCCTGCAAAAAGGCCGAGTCAAAATGGCCCCAGAACAACCCCT
Found at i:83231 original size:23 final size:23
Alignment explanation
Indices: 83204--83249 Score: 83
Period size: 23 Copynumber: 2.0 Consensus size: 23
83194 GAGCGAATGT
*
83204 TTACAAGCATGTTTATAAGCATG
1 TTACAAGCATGTTTACAAGCATG
83227 TTACAAGCATGTTTACAAGCATG
1 TTACAAGCATGTTTACAAGCATG
83250 GAATGTTTCG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.35, C:0.15, G:0.17, T:0.33
Consensus pattern (23 bp):
TTACAAGCATGTTTACAAGCATG
Left flanking sequence: Indices 82704 -- 83203
ACTTCACCAAGATCTTCACCTTGGACGACGAGGAGCACGCCATCAAGGAACCCCCCGTGCCGGAG
AACGAGCTCCCGACGTTGATCTTCCGGGGCAAGTGTCCCGAGGGGAGGCCCGACAACGTGGAGCC
GTTTATCGGGATCTTCCTGTTTGAGAAGGAGAACCCCTAGGATGTATGTATTATAGAGGTGCGTG
GCACCACCCGGGACTGTGTCCCGCAGTTAGACCAAAAATAAACACGTCTGGTTGCGTATCTGGCT
CGGAGCGGCTCCGGGTGCGGTGAATACGAGCATTCTCGGGTCGTCATCCATTGCTGTCCCTGGCA
ACAATGACGGGGAAGCTGCGATCTTCGTAAACGGGGAAGAGTCTTGGCGGGGAGGAAGGTGGTGG
GATGGTGGGTTCCTACGGTGGTGGTTTCTACGGTTAACTAGGGAGCGGTGGTGGGTACCAGCTGG
TGGTGTCTAACGATCCATCGCAGCCTACGAATGGAGAGCGAATGT
Right flanking sequence: Indices 83250 -- 83749
GAATGTTTCGGAATGTAGCATTTACGCTAAGGGGAAAAATGTGCTCTCGTTACAATTGGAACATA
ATCGTGCCATAATCTAGAATACACGCATAACACGGGATCCGTCCACATAACACGGGATCCGTCCA
CATAACACGGGATCCGTCATACCACGGGATCCGTCTTTAGACGAGAATCACACAGATTCAAACGG
TGTCGTATCAACCATACAATACGTCCTACTCTGGTCCGTCTACCCCAACCACTCGTGACCCACCA
TTCATAATCTATAATAGTCCTAAATCGTCACTTTACGCTTCTTAAACGCCTTTTGCACGTCCCGC
CGGCGCCGCTTGCACTCAGCAGTCACCTCACCTCGCTGGGCGTAGAACCACGTCTCGTAGTCCAT
GTCCTTGTCCAGCCCGGGAAGCGCAATCGCCGCCCCCACCCCTCCGATCTGGTTGAGCTGGGTCT
GGGCCTGCAAAAAGGCCGAGTCAAAATGGCCCCAGAACAACCCCT
Found at i:83365 original size:20 final size:20
Alignment explanation
Indices: 83340--83414 Score: 120
Period size: 20 Copynumber: 3.9 Consensus size: 20
83330 AGAATACACG
83340 CATAACACGGGATCCGTCCA
1 CATAACACGGGATCCGTCCA
83360 CATAACACGGGATCCGTCCA
1 CATAACACGGGATCCGTCCA
83380 CATAACACGGGATCCGT---
1 CATAACACGGGATCCGTCCA
*
83397 CATACCACGGGATCCGTC
1 CATAACACGGGATCCGTC
83415 TTTAGACGAG
Statistics
Matches: 53, Mismatches: 1, Indels: 4
0.91 0.02 0.07
Matches are distributed among these distances:
17 16 0.30
20 37 0.70
ACGTcount: A:0.28, C:0.35, G:0.21, T:0.16
Consensus pattern (20 bp):
CATAACACGGGATCCGTCCA
Left flanking sequence: Indices 82840 -- 83339
CGGGATCTTCCTGTTTGAGAAGGAGAACCCCTAGGATGTATGTATTATAGAGGTGCGTGGCACCA
CCCGGGACTGTGTCCCGCAGTTAGACCAAAAATAAACACGTCTGGTTGCGTATCTGGCTCGGAGC
GGCTCCGGGTGCGGTGAATACGAGCATTCTCGGGTCGTCATCCATTGCTGTCCCTGGCAACAATG
ACGGGGAAGCTGCGATCTTCGTAAACGGGGAAGAGTCTTGGCGGGGAGGAAGGTGGTGGGATGGT
GGGTTCCTACGGTGGTGGTTTCTACGGTTAACTAGGGAGCGGTGGTGGGTACCAGCTGGTGGTGT
CTAACGATCCATCGCAGCCTACGAATGGAGAGCGAATGTTTACAAGCATGTTTATAAGCATGTTA
CAAGCATGTTTACAAGCATGGAATGTTTCGGAATGTAGCATTTACGCTAAGGGGAAAAATGTGCT
CTCGTTACAATTGGAACATAATCGTGCCATAATCTAGAATACACG
Right flanking sequence: Indices 83415 -- 83914
TTTAGACGAGAATCACACAGATTCAAACGGTGTCGTATCAACCATACAATACGTCCTACTCTGGT
CCGTCTACCCCAACCACTCGTGACCCACCATTCATAATCTATAATAGTCCTAAATCGTCACTTTA
CGCTTCTTAAACGCCTTTTGCACGTCCCGCCGGCGCCGCTTGCACTCAGCAGTCACCTCACCTCG
CTGGGCGTAGAACCACGTCTCGTAGTCCATGTCCTTGTCCAGCCCGGGAAGCGCAATCGCCGCCC
CCACCCCTCCGATCTGGTTGAGCTGGGTCTGGGCCTGCAAAAAGGCCGAGTCAAAATGGCCCCAG
AACAACCCCTTGGCCTTGGTGGCCGCCACGGGGGCTCCCGTGGTCAAGGCCACGTTCTGCTTGGC
CTTGATGTCCTCCAACAACCGGAGCTGCTCGTCAACGTCCACCTGGTTCTGGGCGTCGTCGATGT
CGTCGTCGTCAAGCGCGAGCGAGAACCCCTGGGCAGGGCCGGCAT
Found at i:83384 original size:40 final size:37
Alignment explanation
Indices: 83340--83414 Score: 114
Period size: 37 Copynumber: 1.9 Consensus size: 37
83330 AGAATACACG
83340 CATAACACGGGATCCGTCCACATAACACGGGATCCGTCCA
1 CATAACACGGGATCCGT---CATAACACGGGATCCGTCCA
*
83380 CATAACACGGGATCCGTCATACCACGGGATCCGTC
1 CATAACACGGGATCCGTCATAACACGGGATCCGTC
83415 TTTAGACGAG
Statistics
Matches: 34, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
37 17 0.50
40 17 0.50
ACGTcount: A:0.28, C:0.35, G:0.21, T:0.16
Consensus pattern (37 bp):
CATAACACGGGATCCGTCATAACACGGGATCCGTCCA
Left flanking sequence: Indices 82840 -- 83339
CGGGATCTTCCTGTTTGAGAAGGAGAACCCCTAGGATGTATGTATTATAGAGGTGCGTGGCACCA
CCCGGGACTGTGTCCCGCAGTTAGACCAAAAATAAACACGTCTGGTTGCGTATCTGGCTCGGAGC
GGCTCCGGGTGCGGTGAATACGAGCATTCTCGGGTCGTCATCCATTGCTGTCCCTGGCAACAATG
ACGGGGAAGCTGCGATCTTCGTAAACGGGGAAGAGTCTTGGCGGGGAGGAAGGTGGTGGGATGGT
GGGTTCCTACGGTGGTGGTTTCTACGGTTAACTAGGGAGCGGTGGTGGGTACCAGCTGGTGGTGT
CTAACGATCCATCGCAGCCTACGAATGGAGAGCGAATGTTTACAAGCATGTTTATAAGCATGTTA
CAAGCATGTTTACAAGCATGGAATGTTTCGGAATGTAGCATTTACGCTAAGGGGAAAAATGTGCT
CTCGTTACAATTGGAACATAATCGTGCCATAATCTAGAATACACG
Right flanking sequence: Indices 83415 -- 83914
TTTAGACGAGAATCACACAGATTCAAACGGTGTCGTATCAACCATACAATACGTCCTACTCTGGT
CCGTCTACCCCAACCACTCGTGACCCACCATTCATAATCTATAATAGTCCTAAATCGTCACTTTA
CGCTTCTTAAACGCCTTTTGCACGTCCCGCCGGCGCCGCTTGCACTCAGCAGTCACCTCACCTCG
CTGGGCGTAGAACCACGTCTCGTAGTCCATGTCCTTGTCCAGCCCGGGAAGCGCAATCGCCGCCC
CCACCCCTCCGATCTGGTTGAGCTGGGTCTGGGCCTGCAAAAAGGCCGAGTCAAAATGGCCCCAG
AACAACCCCTTGGCCTTGGTGGCCGCCACGGGGGCTCCCGTGGTCAAGGCCACGTTCTGCTTGGC
CTTGATGTCCTCCAACAACCGGAGCTGCTCGTCAACGTCCACCTGGTTCTGGGCGTCGTCGATGT
CGTCGTCGTCAAGCGCGAGCGAGAACCCCTGGGCAGGGCCGGCAT
Found at i:85247 original size:12 final size:12
Alignment explanation
Indices: 85230--85277 Score: 80
Period size: 12 Copynumber: 4.1 Consensus size: 12
85220 TGATATAGGT
85230 AGGGAAAAGGGA
1 AGGGAAAAGGGA
85242 AGGGAAAAGGGA
1 AGGGAAAAGGGA
85254 AGGG-AAAGGGA
1 AGGGAAAAGGGA
*
85265 AAGGAAAAGGGA
1 AGGGAAAAGGGA
85277 A
1 A
85278 AGGGGAAAAA
Statistics
Matches: 34, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
11 10 0.29
12 24 0.71
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (12 bp):
AGGGAAAAGGGA
Left flanking sequence: Indices 84730 -- 85229
CTGATGTCGTGGTAGGTGTGGGAGCTCATGTGGTAGCCGTACGCGGCCGCGAGGGGGTTGATGGG
GGTGGTGGCAATGTGGTGGGTGGCGCTGTTGGTGGGAACCAGCGCCTGGCTCTCGCGGATGCGGG
CCATGCGCAGTTGGTTGATGGCCTCGGAGGTGGCCTGGCGGGCCTCCGCTGGTTTTAGCCTCGGG
GTGGGCTGGGCGTTGTACGCGGGCTTCGCCTCGTCCATCACGAGCTTCGTGCCCATGAACGTCAC
TCCGTTGAATGTGCTGCGCATCTGGGCCCACTGCTTGGGGTCGAGGTCCATGGTGATGAACCCGT
AGTACACGTCGCCGAGCGGCTTACACCGAAGGGCTAGCGGCTCGGTGATGGTCCCGAACTTGGCC
AACCGCCGCTCCAAGTTGGCTGGGTCCTCTGCTAGCTTGGGGGACACGTTCCCGATGTGGATTCT
CATGGGGTGTGTTCGCGATGAGGCTCGAAAAGTGGTGATATAGGT
Right flanking sequence: Indices 85278 -- 85777
AGGGGAAAAACGGAAGAAGGCTTAAAGTTGAGGAGAGGCTAGGAAAGTTATGTGAAAGTAGTGTT
TAGTTGTTTAGATGTTTAGTTGTTTGCGTGTTCGCCTGGCATTGAGGCCATCGTTTTTTGGTGAT
GTCCGTGATACGAGCGTTTTCGTAATCGCCAGACGGGTCCACGCACACCAATTACGATCCACGAT
CCACGTCATTACGTGTTCCACGTGCTTTCTACGTGCGTTCTCCGTGTGCCACTCCTAGTCCACCC
ACCAGTATCATCCCACCCGGGTATTTTCCCCTCACATTCTCGTCAGTGCGACCGCATGACTGACC
AGATCCGGGCCGGGTGGGAAGACCTCCGCAAACAGTACTTTGACGCCAACCAGCGCGAGTTCCGG
GTGATCAACAACCCGAACCCCTCGGGAGCCACCCCCGAGCCCATTGACCCGCCCGCGGCCGCGAA
GCCCGAGCCGGAGCAATCGTTTGGCCCCACCGTGCCCACGCCACC
Found at i:85264 original size:6 final size:6
Alignment explanation
Indices: 85230--85281 Score: 63
Period size: 6 Copynumber: 8.7 Consensus size: 6
85220 TGATATAGGT
*
85230 AGGGAAA AGGG-A AGGGAAA AGGG-A AGGGAA AGGGAA AGGAAA AGGGAA
1 AGGG-AA AGGGAA AGGG-AA AGGGAA AGGGAA AGGGAA AGGGAA AGGGAA
85278 AGGG
1 AGGG
85282 GAAAAACGGA
Statistics
Matches: 40, Mismatches: 2, Indels: 7
0.82 0.04 0.14
Matches are distributed among these distances:
5 10 0.25
6 21 0.52
7 9 0.22
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (6 bp):
AGGGAA
Left flanking sequence: Indices 84730 -- 85229
CTGATGTCGTGGTAGGTGTGGGAGCTCATGTGGTAGCCGTACGCGGCCGCGAGGGGGTTGATGGG
GGTGGTGGCAATGTGGTGGGTGGCGCTGTTGGTGGGAACCAGCGCCTGGCTCTCGCGGATGCGGG
CCATGCGCAGTTGGTTGATGGCCTCGGAGGTGGCCTGGCGGGCCTCCGCTGGTTTTAGCCTCGGG
GTGGGCTGGGCGTTGTACGCGGGCTTCGCCTCGTCCATCACGAGCTTCGTGCCCATGAACGTCAC
TCCGTTGAATGTGCTGCGCATCTGGGCCCACTGCTTGGGGTCGAGGTCCATGGTGATGAACCCGT
AGTACACGTCGCCGAGCGGCTTACACCGAAGGGCTAGCGGCTCGGTGATGGTCCCGAACTTGGCC
AACCGCCGCTCCAAGTTGGCTGGGTCCTCTGCTAGCTTGGGGGACACGTTCCCGATGTGGATTCT
CATGGGGTGTGTTCGCGATGAGGCTCGAAAAGTGGTGATATAGGT
Right flanking sequence: Indices 85282 -- 85781
GAAAAACGGAAGAAGGCTTAAAGTTGAGGAGAGGCTAGGAAAGTTATGTGAAAGTAGTGTTTAGT
TGTTTAGATGTTTAGTTGTTTGCGTGTTCGCCTGGCATTGAGGCCATCGTTTTTTGGTGATGTCC
GTGATACGAGCGTTTTCGTAATCGCCAGACGGGTCCACGCACACCAATTACGATCCACGATCCAC
GTCATTACGTGTTCCACGTGCTTTCTACGTGCGTTCTCCGTGTGCCACTCCTAGTCCACCCACCA
GTATCATCCCACCCGGGTATTTTCCCCTCACATTCTCGTCAGTGCGACCGCATGACTGACCAGAT
CCGGGCCGGGTGGGAAGACCTCCGCAAACAGTACTTTGACGCCAACCAGCGCGAGTTCCGGGTGA
TCAACAACCCGAACCCCTCGGGAGCCACCCCCGAGCCCATTGACCCGCCCGCGGCCGCGAAGCCC
GAGCCGGAGCAATCGTTTGGCCCCACCGTGCCCACGCCACCGAAC
Found at i:85264 original size:18 final size:19
Alignment explanation
Indices: 85232--85286 Score: 71
Period size: 18 Copynumber: 3.0 Consensus size: 19
85222 ATATAGGTAG
85232 GGAAAAGGG-AAGGGAAAA
1 GGAAAAGGGAAAGGGAAAA
*
85250 GG-GAAGGGAAAGGG-AAA
1 GGAAAAGGGAAAGGGAAAA
85267 GGAAAAGGGAAAGGGGAAAA
1 GGAAAAGGGAAA-GGGAAAA
85287 ACGGAAGAAG
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
17 10 0.32
18 15 0.48
19 3 0.10
20 3 0.10
ACGTcount: A:0.53, C:0.00, G:0.47, T:0.00
Consensus pattern (19 bp):
GGAAAAGGGAAAGGGAAAA
Left flanking sequence: Indices 84732 -- 85231
GATGTCGTGGTAGGTGTGGGAGCTCATGTGGTAGCCGTACGCGGCCGCGAGGGGGTTGATGGGGG
TGGTGGCAATGTGGTGGGTGGCGCTGTTGGTGGGAACCAGCGCCTGGCTCTCGCGGATGCGGGCC
ATGCGCAGTTGGTTGATGGCCTCGGAGGTGGCCTGGCGGGCCTCCGCTGGTTTTAGCCTCGGGGT
GGGCTGGGCGTTGTACGCGGGCTTCGCCTCGTCCATCACGAGCTTCGTGCCCATGAACGTCACTC
CGTTGAATGTGCTGCGCATCTGGGCCCACTGCTTGGGGTCGAGGTCCATGGTGATGAACCCGTAG
TACACGTCGCCGAGCGGCTTACACCGAAGGGCTAGCGGCTCGGTGATGGTCCCGAACTTGGCCAA
CCGCCGCTCCAAGTTGGCTGGGTCCTCTGCTAGCTTGGGGGACACGTTCCCGATGTGGATTCTCA
TGGGGTGTGTTCGCGATGAGGCTCGAAAAGTGGTGATATAGGTAG
Right flanking sequence: Indices 85287 -- 85786
ACGGAAGAAGGCTTAAAGTTGAGGAGAGGCTAGGAAAGTTATGTGAAAGTAGTGTTTAGTTGTTT
AGATGTTTAGTTGTTTGCGTGTTCGCCTGGCATTGAGGCCATCGTTTTTTGGTGATGTCCGTGAT
ACGAGCGTTTTCGTAATCGCCAGACGGGTCCACGCACACCAATTACGATCCACGATCCACGTCAT
TACGTGTTCCACGTGCTTTCTACGTGCGTTCTCCGTGTGCCACTCCTAGTCCACCCACCAGTATC
ATCCCACCCGGGTATTTTCCCCTCACATTCTCGTCAGTGCGACCGCATGACTGACCAGATCCGGG
CCGGGTGGGAAGACCTCCGCAAACAGTACTTTGACGCCAACCAGCGCGAGTTCCGGGTGATCAAC
AACCCGAACCCCTCGGGAGCCACCCCCGAGCCCATTGACCCGCCCGCGGCCGCGAAGCCCGAGCC
GGAGCAATCGTTTGGCCCCACCGTGCCCACGCCACCGAACCCCGA
Found at i:85980 original size:15 final size:15
Alignment explanation
Indices: 85955--86004 Score: 59
Period size: 15 Copynumber: 3.4 Consensus size: 15
85945 GACGGCGAAT
85955 GAACGGGCGAAGAGAC
1 GAAC-GGCGAAGAGAC
*
85971 GAACGGCGAAGTGAC
1 GAACGGCGAAGAGAC
*
85986 GAAC-G-GACGAGAC
1 GAACGGCGAAGAGAC
85999 GAACGG
1 GAACGG
86005 ACGATGGGTC
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
13 10 0.33
14 2 0.07
15 14 0.47
16 4 0.13
ACGTcount: A:0.36, C:0.20, G:0.42, T:0.02
Consensus pattern (15 bp):
GAACGGCGAAGAGAC
Left flanking sequence: Indices 85455 -- 85954
CCAATTACGATCCACGATCCACGTCATTACGTGTTCCACGTGCTTTCTACGTGCGTTCTCCGTGT
GCCACTCCTAGTCCACCCACCAGTATCATCCCACCCGGGTATTTTCCCCTCACATTCTCGTCAGT
GCGACCGCATGACTGACCAGATCCGGGCCGGGTGGGAAGACCTCCGCAAACAGTACTTTGACGCC
AACCAGCGCGAGTTCCGGGTGATCAACAACCCGAACCCCTCGGGAGCCACCCCCGAGCCCATTGA
CCCGCCCGCGGCCGCGAAGCCCGAGCCGGAGCAATCGTTTGGCCCCACCGTGCCCACGCCACCGA
ACCCCGACGAGATCGTGGGCCTGGTGGAGAACTCGGAGCTTTTGACGATGGTGGAGACGCTTCCC
AACTGCGACGTGTACAAACAGGAGCTCAAGAATCTCGTGATGGAGTGGTACTGGAAGGGGTTCTA
CAACGGGTTCAACCACGGGACGGACCAGGCGAAGTGACGGCGAAT
Right flanking sequence: Indices 86005 -- 86504
ACGATGGGTCTAATCGGGTGTAATTGCCCGGCTAATGGCGCTAGGACCCGCTAGTGTGGATGATG
GTTGGATAGTGCATGATTTATGACTTAAGCACGCTATTCCATATCCCATCCCCTACTATACCCAC
CATACCCCTAATATACCCATACTCCCTACTATCCCATCCCTAGTACCCCACACCCACTACCCACT
CACTACCCACACCCACACCAACTCCCTCCCTCCTTCCTTTTTCGTCTCGCGAGCGCATCCTCGGG
CTTGCGGAACCGACGCACATGAAAAATTATGGGGTAGCGAGGCCAAACAACCAATCAACACGCGT
AAAGTAGCGAAAGAGTTTATTAAAACACATCGTATATAGTCTAGGTGGCCTTCCACATGTCCTCC
AAGCCCATGATCGAGGTGAGCGTACCCGCCAAACCAACATCGCCCTCGGTAAAGTGCAAGTAGCC
CAAGGTGTTGCAGGCAATAAACCCGTCCAACAAGTCCCACACGAT
Found at i:86001 original size:13 final size:13
Alignment explanation
Indices: 85983--86008 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
85973 ACGGCGAAGT
85983 GACGAACGGACGA
1 GACGAACGGACGA
85996 GACGAACGGACGA
1 GACGAACGGACGA
86009 TGGGTCTAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.23, G:0.38, T:0.00
Consensus pattern (13 bp):
GACGAACGGACGA
Left flanking sequence: Indices 85483 -- 85982
ACGTGTTCCACGTGCTTTCTACGTGCGTTCTCCGTGTGCCACTCCTAGTCCACCCACCAGTATCA
TCCCACCCGGGTATTTTCCCCTCACATTCTCGTCAGTGCGACCGCATGACTGACCAGATCCGGGC
CGGGTGGGAAGACCTCCGCAAACAGTACTTTGACGCCAACCAGCGCGAGTTCCGGGTGATCAACA
ACCCGAACCCCTCGGGAGCCACCCCCGAGCCCATTGACCCGCCCGCGGCCGCGAAGCCCGAGCCG
GAGCAATCGTTTGGCCCCACCGTGCCCACGCCACCGAACCCCGACGAGATCGTGGGCCTGGTGGA
GAACTCGGAGCTTTTGACGATGGTGGAGACGCTTCCCAACTGCGACGTGTACAAACAGGAGCTCA
AGAATCTCGTGATGGAGTGGTACTGGAAGGGGTTCTACAACGGGTTCAACCACGGGACGGACCAG
GCGAAGTGACGGCGAATGAACGGGCGAAGAGACGAACGGCGAAGT
Right flanking sequence: Indices 86009 -- 86508
TGGGTCTAATCGGGTGTAATTGCCCGGCTAATGGCGCTAGGACCCGCTAGTGTGGATGATGGTTG
GATAGTGCATGATTTATGACTTAAGCACGCTATTCCATATCCCATCCCCTACTATACCCACCATA
CCCCTAATATACCCATACTCCCTACTATCCCATCCCTAGTACCCCACACCCACTACCCACTCACT
ACCCACACCCACACCAACTCCCTCCCTCCTTCCTTTTTCGTCTCGCGAGCGCATCCTCGGGCTTG
CGGAACCGACGCACATGAAAAATTATGGGGTAGCGAGGCCAAACAACCAATCAACACGCGTAAAG
TAGCGAAAGAGTTTATTAAAACACATCGTATATAGTCTAGGTGGCCTTCCACATGTCCTCCAAGC
CCATGATCGAGGTGAGCGTACCCGCCAAACCAACATCGCCCTCGGTAAAGTGCAAGTAGCCCAAG
GTGTTGCAGGCAATAAACCCGTCCAACAAGTCCCACACGATCTTG
Found at i:86144 original size:20 final size:19
Alignment explanation
Indices: 86115--86153 Score: 60
Period size: 20 Copynumber: 2.0 Consensus size: 19
86105 ATTCCATATC
*
86115 CCATCCCCTACTATACCCA
1 CCATCCCCTAATATACCCA
86134 CCATACCCCTAATATACCCA
1 CCAT-CCCCTAATATACCCA
86154 TACTCCCTAC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 4 0.22
20 14 0.78
ACGTcount: A:0.31, C:0.49, G:0.00, T:0.21
Consensus pattern (19 bp):
CCATCCCCTAATATACCCA
Left flanking sequence: Indices 85615 -- 86114
GGTGGGAAGACCTCCGCAAACAGTACTTTGACGCCAACCAGCGCGAGTTCCGGGTGATCAACAAC
CCGAACCCCTCGGGAGCCACCCCCGAGCCCATTGACCCGCCCGCGGCCGCGAAGCCCGAGCCGGA
GCAATCGTTTGGCCCCACCGTGCCCACGCCACCGAACCCCGACGAGATCGTGGGCCTGGTGGAGA
ACTCGGAGCTTTTGACGATGGTGGAGACGCTTCCCAACTGCGACGTGTACAAACAGGAGCTCAAG
AATCTCGTGATGGAGTGGTACTGGAAGGGGTTCTACAACGGGTTCAACCACGGGACGGACCAGGC
GAAGTGACGGCGAATGAACGGGCGAAGAGACGAACGGCGAAGTGACGAACGGACGAGACGAACGG
ACGATGGGTCTAATCGGGTGTAATTGCCCGGCTAATGGCGCTAGGACCCGCTAGTGTGGATGATG
GTTGGATAGTGCATGATTTATGACTTAAGCACGCTATTCCATATC
Right flanking sequence: Indices 86154 -- 86653
TACTCCCTACTATCCCATCCCTAGTACCCCACACCCACTACCCACTCACTACCCACACCCACACC
AACTCCCTCCCTCCTTCCTTTTTCGTCTCGCGAGCGCATCCTCGGGCTTGCGGAACCGACGCACA
TGAAAAATTATGGGGTAGCGAGGCCAAACAACCAATCAACACGCGTAAAGTAGCGAAAGAGTTTA
TTAAAACACATCGTATATAGTCTAGGTGGCCTTCCACATGTCCTCCAAGCCCATGATCGAGGTGA
GCGTACCCGCCAAACCAACATCGCCCTCGGTAAAGTGCAAGTAGCCCAAGGTGTTGCAGGCAATA
AACCCGTCCAACAAGTCCCACACGATCTTGCGCTTGGCAGTGTACAAGTTGGCGTTGACCTGCTT
CAACTGGTCGGCGTTCTTCTCGGCGTTGCGCAACTCGGTCTTGTACTGGTTGTAGTAGTAGACCT
TCTGCAACCCGCCCACGAGCGAGGCCAAAATGCCAATCAACCAGA
Found at i:86156 original size:17 final size:17
Alignment explanation
Indices: 86134--86171 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 17
86124 ACTATACCCA
86134 CCATAC-CCCTAATATAC
1 CCATACTCCCTAATAT-C
*
86151 CCATACTCCCTACTATC
1 CCATACTCCCTAATATC
86168 CCAT
1 CCAT
86172 CCCTAGTACC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 11 0.58
18 8 0.42
ACGTcount: A:0.29, C:0.45, G:0.00, T:0.26
Consensus pattern (17 bp):
CCATACTCCCTAATATC
Left flanking sequence: Indices 85634 -- 86133
ACAGTACTTTGACGCCAACCAGCGCGAGTTCCGGGTGATCAACAACCCGAACCCCTCGGGAGCCA
CCCCCGAGCCCATTGACCCGCCCGCGGCCGCGAAGCCCGAGCCGGAGCAATCGTTTGGCCCCACC
GTGCCCACGCCACCGAACCCCGACGAGATCGTGGGCCTGGTGGAGAACTCGGAGCTTTTGACGAT
GGTGGAGACGCTTCCCAACTGCGACGTGTACAAACAGGAGCTCAAGAATCTCGTGATGGAGTGGT
ACTGGAAGGGGTTCTACAACGGGTTCAACCACGGGACGGACCAGGCGAAGTGACGGCGAATGAAC
GGGCGAAGAGACGAACGGCGAAGTGACGAACGGACGAGACGAACGGACGATGGGTCTAATCGGGT
GTAATTGCCCGGCTAATGGCGCTAGGACCCGCTAGTGTGGATGATGGTTGGATAGTGCATGATTT
ATGACTTAAGCACGCTATTCCATATCCCATCCCCTACTATACCCA
Right flanking sequence: Indices 86172 -- 86671
CCCTAGTACCCCACACCCACTACCCACTCACTACCCACACCCACACCAACTCCCTCCCTCCTTCC
TTTTTCGTCTCGCGAGCGCATCCTCGGGCTTGCGGAACCGACGCACATGAAAAATTATGGGGTAG
CGAGGCCAAACAACCAATCAACACGCGTAAAGTAGCGAAAGAGTTTATTAAAACACATCGTATAT
AGTCTAGGTGGCCTTCCACATGTCCTCCAAGCCCATGATCGAGGTGAGCGTACCCGCCAAACCAA
CATCGCCCTCGGTAAAGTGCAAGTAGCCCAAGGTGTTGCAGGCAATAAACCCGTCCAACAAGTCC
CACACGATCTTGCGCTTGGCAGTGTACAAGTTGGCGTTGACCTGCTTCAACTGGTCGGCGTTCTT
CTCGGCGTTGCGCAACTCGGTCTTGTACTGGTTGTAGTAGTAGACCTTCTGCAACCCGCCCACGA
GCGAGGCCAAAATGCCAATCAACCAGAACTTGGCGGCGTACTTGG
Found at i:87636 original size:29 final size:27
Alignment explanation
Indices: 87593--87672 Score: 94
Period size: 29 Copynumber: 3.0 Consensus size: 27
87583 ACCGTGCTGC
87593 GATTCTGCACCCGTGCTGCAATTCTACT
1 GATTC-GCACCCGTGCTGCAATTCTACT
*
87621 GAGATTCGCACCCGTGCTGCAATGCTACT
1 --GATTCGCACCCGTGCTGCAATTCTACT
*
87650 -A--CGCACCCGTGCTGCAAATCTAC
1 GATTCGCACCCGTGCTGCAATTCTAC
87673 GCACCAGTGC
Statistics
Matches: 47, Mismatches: 3, Indels: 6
0.84 0.05 0.11
Matches are distributed among these distances:
24 20 0.43
26 1 0.02
29 21 0.45
30 5 0.11
ACGTcount: A:0.21, C:0.34, G:0.20, T:0.25
Consensus pattern (27 bp):
GATTCGCACCCGTGCTGCAATTCTACT
Left flanking sequence: Indices 87093 -- 87592
AAATGGCAAATGCGATCAGAGGACAATGCGCCTATGAAAGTGCGCAGCCGTTGAAAAGCAACGGC
GTGCGTAAGCCCGAGGACGCGGGCCCGGGCAGTGCGCTGGCTACGCGGGCGGGGACGGGTCAATG
GGGGCGGGAGGGGCCTGTGCTGGGGGCTCGGGCTGCCCTGGGACCTCGGTCTGTCCCTGGGGCAA
CCTTGCTGTTCACGTGATGTGCGTTGATGTGGAGTGTCACTCTGGGGTAATCGGTCGAAAGGAGG
TGGTCCGAGGCCCGTCGTGTGAGAGTGGAGAGACGAGAGAGTGGAGGGATAGGGAAGTGAGGAGA
CCGGTGGGTAGAAAAAGAGAGGTTTCGCAAGGGGAGGACCGCCACAGTAGAGGACCCGTGGCCAC
ACTTTCAGGGGGCGTCATCTATTTCACCGACCGCCTGCACCTGGCGTCACCAACGCTCGTGCCGC
AGGTTGAACCGCGGAGCAAGCTTCGTGCTGCAACAACCGTGCTGC
Right flanking sequence: Indices 87673 -- 88172
GCACCAGTGCAATACTACGTGTTGCCGCACTCGTGCTGCAACGCCCGACGGAGCCGCCGTCGGAG
TACCCCTATTCACGACGATCTCGCGTCGATTGCGTCGATTGCGCGTGCCTGACGCGGGGTCATCC
AGGGAATTTCCGCTTGCTGGGAACCCCGCCCGTGGAGAACGGCGCTATCGGCCACCGCTCGTAAC
AGCGGGAGATACAGTTTAGTGGTGGTCGCTAGTGGATCTGTGATTCGGCTATATGCAGGGCGAGC
CCATGAGGTAACGGTGCTGAAGCGAGTTACGAGCCCACTATTGTAGAGCTTGATTAAGACTTGAT
TGTAATTAACTAAGCGGAATCCACTGTGGTTGTATATGCCTTGCGGTCTGCGATTCTAATCCGCC
TTGGCCTTGGCTGCCTTGGCTGCCTTGTCCTGGGCCTTTCTCGCTGCGCGCTCGTCGCGGCGCAC
GGCCCGGGCGGCCTCCTCGCGGGCCTTGGCCTCGTCGTAGCTCAC
Found at i:87672 original size:24 final size:26
Alignment explanation
Indices: 87599--87672 Score: 82
Period size: 24 Copynumber: 2.8 Consensus size: 26
87589 CTGCGATTCT
*
87599 GCACCCGTGCTGCAATTCTACTGAGATTC
1 GCACCCGTGCTGCAAATCTACT--GA-TC
87628 GCACCCGTGCTGC-AATGCTACT-A-C
1 GCACCCGTGCTGCAAAT-CTACTGATC
87652 GCACCCGTGCTGCAAATCTAC
1 GCACCCGTGCTGCAAATCTAC
87673 GCACCAGTGC
Statistics
Matches: 42, Mismatches: 1, Indels: 9
0.81 0.02 0.17
Matches are distributed among these distances:
24 18 0.43
25 3 0.07
26 1 0.02
28 2 0.05
29 18 0.43
ACGTcount: A:0.22, C:0.35, G:0.20, T:0.23
Consensus pattern (26 bp):
GCACCCGTGCTGCAAATCTACTGATC
Left flanking sequence: Indices 87099 -- 87598
CAAATGCGATCAGAGGACAATGCGCCTATGAAAGTGCGCAGCCGTTGAAAAGCAACGGCGTGCGT
AAGCCCGAGGACGCGGGCCCGGGCAGTGCGCTGGCTACGCGGGCGGGGACGGGTCAATGGGGGCG
GGAGGGGCCTGTGCTGGGGGCTCGGGCTGCCCTGGGACCTCGGTCTGTCCCTGGGGCAACCTTGC
TGTTCACGTGATGTGCGTTGATGTGGAGTGTCACTCTGGGGTAATCGGTCGAAAGGAGGTGGTCC
GAGGCCCGTCGTGTGAGAGTGGAGAGACGAGAGAGTGGAGGGATAGGGAAGTGAGGAGACCGGTG
GGTAGAAAAAGAGAGGTTTCGCAAGGGGAGGACCGCCACAGTAGAGGACCCGTGGCCACACTTTC
AGGGGGCGTCATCTATTTCACCGACCGCCTGCACCTGGCGTCACCAACGCTCGTGCCGCAGGTTG
AACCGCGGAGCAAGCTTCGTGCTGCAACAACCGTGCTGCGATTCT
Right flanking sequence: Indices 87673 -- 88172
GCACCAGTGCAATACTACGTGTTGCCGCACTCGTGCTGCAACGCCCGACGGAGCCGCCGTCGGAG
TACCCCTATTCACGACGATCTCGCGTCGATTGCGTCGATTGCGCGTGCCTGACGCGGGGTCATCC
AGGGAATTTCCGCTTGCTGGGAACCCCGCCCGTGGAGAACGGCGCTATCGGCCACCGCTCGTAAC
AGCGGGAGATACAGTTTAGTGGTGGTCGCTAGTGGATCTGTGATTCGGCTATATGCAGGGCGAGC
CCATGAGGTAACGGTGCTGAAGCGAGTTACGAGCCCACTATTGTAGAGCTTGATTAAGACTTGAT
TGTAATTAACTAAGCGGAATCCACTGTGGTTGTATATGCCTTGCGGTCTGCGATTCTAATCCGCC
TTGGCCTTGGCTGCCTTGGCTGCCTTGTCCTGGGCCTTTCTCGCTGCGCGCTCGTCGCGGCGCAC
GGCCCGGGCGGCCTCCTCGCGGGCCTTGGCCTCGTCGTAGCTCAC
Found at i:87674 original size:21 final size:23
Alignment explanation
Indices: 87627--87682 Score: 71
Period size: 24 Copynumber: 2.5 Consensus size: 23
87617 TACTGAGATT
*
87627 CGCACCCGTGCTGCAATGCTACTA
1 CGCACCCGTGCTGCAA-GATACTA
87651 CGCACCCGTGCTGCAA-AT-CTA
1 CGCACCCGTGCTGCAAGATACTA
*
87672 CGCACCAGTGC
1 CGCACCCGTGC
87683 AATACTACGT
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
21 13 0.43
22 1 0.03
24 16 0.53
ACGTcount: A:0.21, C:0.39, G:0.21, T:0.18
Consensus pattern (23 bp):
CGCACCCGTGCTGCAAGATACTA
Left flanking sequence: Indices 87127 -- 87626
TGAAAGTGCGCAGCCGTTGAAAAGCAACGGCGTGCGTAAGCCCGAGGACGCGGGCCCGGGCAGTG
CGCTGGCTACGCGGGCGGGGACGGGTCAATGGGGGCGGGAGGGGCCTGTGCTGGGGGCTCGGGCT
GCCCTGGGACCTCGGTCTGTCCCTGGGGCAACCTTGCTGTTCACGTGATGTGCGTTGATGTGGAG
TGTCACTCTGGGGTAATCGGTCGAAAGGAGGTGGTCCGAGGCCCGTCGTGTGAGAGTGGAGAGAC
GAGAGAGTGGAGGGATAGGGAAGTGAGGAGACCGGTGGGTAGAAAAAGAGAGGTTTCGCAAGGGG
AGGACCGCCACAGTAGAGGACCCGTGGCCACACTTTCAGGGGGCGTCATCTATTTCACCGACCGC
CTGCACCTGGCGTCACCAACGCTCGTGCCGCAGGTTGAACCGCGGAGCAAGCTTCGTGCTGCAAC
AACCGTGCTGCGATTCTGCACCCGTGCTGCAATTCTACTGAGATT
Right flanking sequence: Indices 87683 -- 88182
AATACTACGTGTTGCCGCACTCGTGCTGCAACGCCCGACGGAGCCGCCGTCGGAGTACCCCTATT
CACGACGATCTCGCGTCGATTGCGTCGATTGCGCGTGCCTGACGCGGGGTCATCCAGGGAATTTC
CGCTTGCTGGGAACCCCGCCCGTGGAGAACGGCGCTATCGGCCACCGCTCGTAACAGCGGGAGAT
ACAGTTTAGTGGTGGTCGCTAGTGGATCTGTGATTCGGCTATATGCAGGGCGAGCCCATGAGGTA
ACGGTGCTGAAGCGAGTTACGAGCCCACTATTGTAGAGCTTGATTAAGACTTGATTGTAATTAAC
TAAGCGGAATCCACTGTGGTTGTATATGCCTTGCGGTCTGCGATTCTAATCCGCCTTGGCCTTGG
CTGCCTTGGCTGCCTTGTCCTGGGCCTTTCTCGCTGCGCGCTCGTCGCGGCGCACGGCCCGGGCG
GCCTCCTCGCGGGCCTTGGCCTCGTCGTAGCTCACGCGTTCCTCA
Found at i:88669 original size:12 final size:12
Alignment explanation
Indices: 88648--88697 Score: 55
Period size: 12 Copynumber: 4.2 Consensus size: 12
88638 AGTCAACGAG
88648 ACCAGATCAGAA
1 ACCAGATCAGAA
* *
88660 ATCGGATCAGAA
1 ACCAGATCAGAA
*
88672 ACCAGATCAGAG
1 ACCAGATCAGAA
* *
88684 ACCAAACCAGAA
1 ACCAGATCAGAA
88696 AC
1 AC
88698 ACCAGCCAGA
Statistics
Matches: 30, Mismatches: 8, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
12 30 1.00
ACGTcount: A:0.48, C:0.26, G:0.18, T:0.08
Consensus pattern (12 bp):
ACCAGATCAGAA
Left flanking sequence: Indices 88148 -- 88647
GGGCCTTGGCCTCGTCGTAGCTCACGCGTTCCTCAAGCGTCACCATGCGGTTGGCACAGAAGTCG
TGCCCGCTGCGGAGCACCTCGAGGTACTTGTTGCGGTAGGCGTTTTTGTCGGAGTCCGACAACTG
CCGCCACCGGTGGGCCAACTCCGGGCGCGATGCAGACAGGCTGTGGAGAAAGTAGAAGTAGTGCC
AGGTGTGCTGGTAGTTTGGCAGGCCTGAGAAGTAGGCGCGTCCCGAGGCGTCGCGGCCGCGGTGG
AGGCGGTCCGGCAGGGGTTTGCGGGGTTTGGAGGGTGGGTGGTGATTAGTGTGGTGGTTAGGGTG
GTTAGGTTTGGAGTGATCGAGATTAGAGTTGTTAGGGTAGTCAGTTTGGTTAGAGTGTTGATTCG
TAGCCGTGTGGTTAGTTTGGTTAGTGTGGCTCGTGGCCTGGTTCGTGTGGTGGCCAAGAGTCTGC
TCATTAGCCTCCTTTTGTCGGTCACCAACCACCGTAGTCAACGAG
Right flanking sequence: Indices 88698 -- 89197
ACCAGCCAGACTAGAAACACCACCCATTCCAACCAGATCATCCCCTGTAGAAACACCCTTCCCTC
TCTTCTTCTCCCCCTTGTCCCCTTTCTTCTCTCCCCTCCCCTTCAAAAGCTTTGCCCGGTGGCCC
TCCAGCTTCGGGGCCCGCTCGTACGCAGCAGCCGCCCACGCGGCAAAGTCAAACGCCCCGTCGTC
CATCCGCTGCTCGAGCTCGCGCACCACCAGCCCGTCCGTCACCACCACCTTGGGCACCGCCACCC
ACCCGTGCCGCGTGTACACGGGCATCCACTGCGCGGGCTCCGTCGCCAACGGCGGCACCGTCCGC
AGCGACTTCAGCACCGCTCGCAGCACTGACCGCACCGGCACCGCTCGCAGCACCGTCGTCAGCAC
CGCTCGCACCAGCACCGACATCAGCAACGCTCGCACCGGCACCGCTCGCACCGACACCGATCGCA
TCGGCACCGCTCGCACCAACCCTGCCCCCAGCACCGCCCCCAGCA
Found at i:88777 original size:21 final size:21
Alignment explanation
Indices: 88753--88804 Score: 54
Period size: 21 Copynumber: 2.4 Consensus size: 21
88743 TGTAGAAACA
88753 CCCTTCCCTCTCTTCTTCTC-C
1 CCCTTCCCTCT-TTCTTCTCTC
88774 CCCTTGTCCC-CTTTCTTCTCTC
1 CCC-T-TCCCTCTTTCTTCTCTC
*
88796 CCCTCCCCT
1 CCCTTCCCT
88805 TCAAAAGCTT
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
20 3 0.12
21 12 0.46
22 7 0.27
23 4 0.15
ACGTcount: A:0.00, C:0.58, G:0.02, T:0.40
Consensus pattern (21 bp):
CCCTTCCCTCTTTCTTCTCTC
Left flanking sequence: Indices 88253 -- 88752
CGTTTTTGTCGGAGTCCGACAACTGCCGCCACCGGTGGGCCAACTCCGGGCGCGATGCAGACAGG
CTGTGGAGAAAGTAGAAGTAGTGCCAGGTGTGCTGGTAGTTTGGCAGGCCTGAGAAGTAGGCGCG
TCCCGAGGCGTCGCGGCCGCGGTGGAGGCGGTCCGGCAGGGGTTTGCGGGGTTTGGAGGGTGGGT
GGTGATTAGTGTGGTGGTTAGGGTGGTTAGGTTTGGAGTGATCGAGATTAGAGTTGTTAGGGTAG
TCAGTTTGGTTAGAGTGTTGATTCGTAGCCGTGTGGTTAGTTTGGTTAGTGTGGCTCGTGGCCTG
GTTCGTGTGGTGGCCAAGAGTCTGCTCATTAGCCTCCTTTTGTCGGTCACCAACCACCGTAGTCA
ACGAGACCAGATCAGAAATCGGATCAGAAACCAGATCAGAGACCAAACCAGAAACACCAGCCAGA
CTAGAAACACCACCCATTCCAACCAGATCATCCCCTGTAGAAACA
Right flanking sequence: Indices 88805 -- 89304
TCAAAAGCTTTGCCCGGTGGCCCTCCAGCTTCGGGGCCCGCTCGTACGCAGCAGCCGCCCACGCG
GCAAAGTCAAACGCCCCGTCGTCCATCCGCTGCTCGAGCTCGCGCACCACCAGCCCGTCCGTCAC
CACCACCTTGGGCACCGCCACCCACCCGTGCCGCGTGTACACGGGCATCCACTGCGCGGGCTCCG
TCGCCAACGGCGGCACCGTCCGCAGCGACTTCAGCACCGCTCGCAGCACTGACCGCACCGGCACC
GCTCGCAGCACCGTCGTCAGCACCGCTCGCACCAGCACCGACATCAGCAACGCTCGCACCGGCAC
CGCTCGCACCGACACCGATCGCATCGGCACCGCTCGCACCAACCCTGCCCCCAGCACCGCCCCCA
GCACCGCCCCGGCCCCCACCAGCCCTGCTCCCAGCCCCACCTTCACCCCCCCCGCGCGCGTCCAT
ACCATCCCCCTGAGCATCTCAGCAATGGTGGCAGAAAATAATTAG
Found at i:89048 original size:12 final size:12
Alignment explanation
Indices: 89031--89095 Score: 62
Period size: 12 Copynumber: 5.2 Consensus size: 12
89021 GCAGCGACTT
89031 CAGCACCGCTCG
1 CAGCACCGCTCG
*
89043 CAGCACTGAC-CG
1 CAGCACCG-CTCG
89055 CACCGGCACCGCTCG
1 CA---GCACCGCTCG
89070 CAGCACCG-TCG
1 CAGCACCGCTCG
89081 TCAGCACCGCTCG
1 -CAGCACCGCTCG
89094 CA
1 CA
89096 CCAGCACCGA
Statistics
Matches: 44, Mismatches: 2, Indels: 14
0.73 0.03 0.23
Matches are distributed among these distances:
11 3 0.07
12 27 0.61
13 4 0.09
14 1 0.02
15 9 0.20
ACGTcount: A:0.18, C:0.48, G:0.25, T:0.09
Consensus pattern (12 bp):
CAGCACCGCTCG
Left flanking sequence: Indices 88531 -- 89030
TGATTCGTAGCCGTGTGGTTAGTTTGGTTAGTGTGGCTCGTGGCCTGGTTCGTGTGGTGGCCAAG
AGTCTGCTCATTAGCCTCCTTTTGTCGGTCACCAACCACCGTAGTCAACGAGACCAGATCAGAAA
TCGGATCAGAAACCAGATCAGAGACCAAACCAGAAACACCAGCCAGACTAGAAACACCACCCATT
CCAACCAGATCATCCCCTGTAGAAACACCCTTCCCTCTCTTCTTCTCCCCCTTGTCCCCTTTCTT
CTCTCCCCTCCCCTTCAAAAGCTTTGCCCGGTGGCCCTCCAGCTTCGGGGCCCGCTCGTACGCAG
CAGCCGCCCACGCGGCAAAGTCAAACGCCCCGTCGTCCATCCGCTGCTCGAGCTCGCGCACCACC
AGCCCGTCCGTCACCACCACCTTGGGCACCGCCACCCACCCGTGCCGCGTGTACACGGGCATCCA
CTGCGCGGGCTCCGTCGCCAACGGCGGCACCGTCCGCAGCGACTT
Right flanking sequence: Indices 89096 -- 89595
CCAGCACCGACATCAGCAACGCTCGCACCGGCACCGCTCGCACCGACACCGATCGCATCGGCACC
GCTCGCACCAACCCTGCCCCCAGCACCGCCCCCAGCACCGCCCCGGCCCCCACCAGCCCTGCTCC
CAGCCCCACCTTCACCCCCCCCGCGCGCGTCCATACCATCCCCCTGAGCATCTCAGCAATGGTGG
CAGAAAATAATTAGTTGCTTTTTCCCCGCGGATGGTGCGGCCGCCGTCCCCCATTTTTGACCCCC
GGTGCGCGCACCTCTCCTCCTCATGTCGTCGCCGTTGTTCCCCCAGGCGAGGCTCACGATGCTGC
CCGGGCCGGCCCGCGGCGGCGCCGGTGCCGACGACGTGTGGGTGCCGCAGTTGCCCGACCGGCCC
CTCACCCAGACGCTGCTGCTCCAGATCTACATCGTGCCCGCGGAGAAGCACTTGTTCGTCCAGGG
GTTCGAGCCCCACGAGTACGAGAACCGCCCGCCCGCCCTCTTGCG
Found at i:89092 original size:24 final size:24
Alignment explanation
Indices: 89025--89122 Score: 79
Period size: 27 Copynumber: 3.8 Consensus size: 24
89015 CCGTCCGCAG
*
89025 CGACTTCAGCACCGCTCGCAGCAC
1 CGACATCAGCACCGCTCGCAGCAC
* * *
89049 TGACCGCACCGGCACCGCTCGCAGCAC
1 CGA---CATCAGCACCGCTCGCAGCAC
* *
89076 CGTCGTCAGCACCGCTCGCACCAGCAC
1 CGACATCAGCACCGCTCG---CAGCAC
*
89103 CGACATCAGCAACGCTCGCA
1 CGACATCAGCACCGCTCGCA
89123 CCGGCACCGC
Statistics
Matches: 56, Mismatches: 12, Indels: 12
0.70 0.15 0.15
Matches are distributed among these distances:
24 16 0.29
27 40 0.71
ACGTcount: A:0.21, C:0.46, G:0.22, T:0.10
Consensus pattern (24 bp):
CGACATCAGCACCGCTCGCAGCAC
Left flanking sequence: Indices 88525 -- 89024
GAGTGTTGATTCGTAGCCGTGTGGTTAGTTTGGTTAGTGTGGCTCGTGGCCTGGTTCGTGTGGTG
GCCAAGAGTCTGCTCATTAGCCTCCTTTTGTCGGTCACCAACCACCGTAGTCAACGAGACCAGAT
CAGAAATCGGATCAGAAACCAGATCAGAGACCAAACCAGAAACACCAGCCAGACTAGAAACACCA
CCCATTCCAACCAGATCATCCCCTGTAGAAACACCCTTCCCTCTCTTCTTCTCCCCCTTGTCCCC
TTTCTTCTCTCCCCTCCCCTTCAAAAGCTTTGCCCGGTGGCCCTCCAGCTTCGGGGCCCGCTCGT
ACGCAGCAGCCGCCCACGCGGCAAAGTCAAACGCCCCGTCGTCCATCCGCTGCTCGAGCTCGCGC
ACCACCAGCCCGTCCGTCACCACCACCTTGGGCACCGCCACCCACCCGTGCCGCGTGTACACGGG
CATCCACTGCGCGGGCTCCGTCGCCAACGGCGGCACCGTCCGCAG
Right flanking sequence: Indices 89123 -- 89622
CCGGCACCGCTCGCACCGACACCGATCGCATCGGCACCGCTCGCACCAACCCTGCCCCCAGCACC
GCCCCCAGCACCGCCCCGGCCCCCACCAGCCCTGCTCCCAGCCCCACCTTCACCCCCCCCGCGCG
CGTCCATACCATCCCCCTGAGCATCTCAGCAATGGTGGCAGAAAATAATTAGTTGCTTTTTCCCC
GCGGATGGTGCGGCCGCCGTCCCCCATTTTTGACCCCCGGTGCGCGCACCTCTCCTCCTCATGTC
GTCGCCGTTGTTCCCCCAGGCGAGGCTCACGATGCTGCCCGGGCCGGCCCGCGGCGGCGCCGGTG
CCGACGACGTGTGGGTGCCGCAGTTGCCCGACCGGCCCCTCACCCAGACGCTGCTGCTCCAGATC
TACATCGTGCCCGCGGAGAAGCACTTGTTCGTCCAGGGGTTCGAGCCCCACGAGTACGAGAACCG
CCCGCCCGCCCTCTTGCGCGGCTGCCTCGTGCTCCGCGTGCTCAA
Found at i:89100 original size:27 final size:27
Alignment explanation
Indices: 89070--89131 Score: 88
Period size: 27 Copynumber: 2.3 Consensus size: 27
89060 GCACCGCTCG
* * *
89070 CAGCACCGTCGTCAGCACCGCTCGCAC
1 CAGCACCGACATCAGCAACGCTCGCAC
89097 CAGCACCGACATCAGCAACGCTCGCAC
1 CAGCACCGACATCAGCAACGCTCGCAC
*
89124 CGGCACCG
1 CAGCACCG
89132 CTCGCACCGA
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.23, C:0.47, G:0.23, T:0.08
Consensus pattern (27 bp):
CAGCACCGACATCAGCAACGCTCGCAC
Left flanking sequence: Indices 88570 -- 89069
GTGGCCTGGTTCGTGTGGTGGCCAAGAGTCTGCTCATTAGCCTCCTTTTGTCGGTCACCAACCAC
CGTAGTCAACGAGACCAGATCAGAAATCGGATCAGAAACCAGATCAGAGACCAAACCAGAAACAC
CAGCCAGACTAGAAACACCACCCATTCCAACCAGATCATCCCCTGTAGAAACACCCTTCCCTCTC
TTCTTCTCCCCCTTGTCCCCTTTCTTCTCTCCCCTCCCCTTCAAAAGCTTTGCCCGGTGGCCCTC
CAGCTTCGGGGCCCGCTCGTACGCAGCAGCCGCCCACGCGGCAAAGTCAAACGCCCCGTCGTCCA
TCCGCTGCTCGAGCTCGCGCACCACCAGCCCGTCCGTCACCACCACCTTGGGCACCGCCACCCAC
CCGTGCCGCGTGTACACGGGCATCCACTGCGCGGGCTCCGTCGCCAACGGCGGCACCGTCCGCAG
CGACTTCAGCACCGCTCGCAGCACTGACCGCACCGGCACCGCTCG
Right flanking sequence: Indices 89132 -- 89631
CTCGCACCGACACCGATCGCATCGGCACCGCTCGCACCAACCCTGCCCCCAGCACCGCCCCCAGC
ACCGCCCCGGCCCCCACCAGCCCTGCTCCCAGCCCCACCTTCACCCCCCCCGCGCGCGTCCATAC
CATCCCCCTGAGCATCTCAGCAATGGTGGCAGAAAATAATTAGTTGCTTTTTCCCCGCGGATGGT
GCGGCCGCCGTCCCCCATTTTTGACCCCCGGTGCGCGCACCTCTCCTCCTCATGTCGTCGCCGTT
GTTCCCCCAGGCGAGGCTCACGATGCTGCCCGGGCCGGCCCGCGGCGGCGCCGGTGCCGACGACG
TGTGGGTGCCGCAGTTGCCCGACCGGCCCCTCACCCAGACGCTGCTGCTCCAGATCTACATCGTG
CCCGCGGAGAAGCACTTGTTCGTCCAGGGGTTCGAGCCCCACGAGTACGAGAACCGCCCGCCCGC
CCTCTTGCGCGGCTGCCTCGTGCTCCGCGTGCTCAAGCCCACCAA
Found at i:89102 original size:15 final size:15
Alignment explanation
Indices: 89082--89170 Score: 78
Period size: 15 Copynumber: 6.1 Consensus size: 15
89072 GCACCGTCGT
89082 CAGCACCGCTCGCAC
1 CAGCACCGCTCGCAC
* *
89097 CAGCACCG---ACAT
1 CAGCACCGCTCGCAC
*
89109 CAGCAACGCTCGCAC
1 CAGCACCGCTCGCAC
*
89124 CGGCACCGCTCGCAC
1 CAGCACCGCTCGCAC
* *
89139 C-GACACCGATCGCAT
1 CAG-CACCGCTCGCAC
*
89154 CGGCACCGCTCGCAC
1 CAGCACCGCTCGCAC
89169 CA
1 CA
89171 ACCCTGCCCC
Statistics
Matches: 57, Mismatches: 12, Indels: 10
0.72 0.15 0.13
Matches are distributed among these distances:
12 9 0.16
14 1 0.02
15 46 0.81
16 1 0.02
ACGTcount: A:0.22, C:0.48, G:0.21, T:0.08
Consensus pattern (15 bp):
CAGCACCGCTCGCAC
Left flanking sequence: Indices 88582 -- 89081
GTGTGGTGGCCAAGAGTCTGCTCATTAGCCTCCTTTTGTCGGTCACCAACCACCGTAGTCAACGA
GACCAGATCAGAAATCGGATCAGAAACCAGATCAGAGACCAAACCAGAAACACCAGCCAGACTAG
AAACACCACCCATTCCAACCAGATCATCCCCTGTAGAAACACCCTTCCCTCTCTTCTTCTCCCCC
TTGTCCCCTTTCTTCTCTCCCCTCCCCTTCAAAAGCTTTGCCCGGTGGCCCTCCAGCTTCGGGGC
CCGCTCGTACGCAGCAGCCGCCCACGCGGCAAAGTCAAACGCCCCGTCGTCCATCCGCTGCTCGA
GCTCGCGCACCACCAGCCCGTCCGTCACCACCACCTTGGGCACCGCCACCCACCCGTGCCGCGTG
TACACGGGCATCCACTGCGCGGGCTCCGTCGCCAACGGCGGCACCGTCCGCAGCGACTTCAGCAC
CGCTCGCAGCACTGACCGCACCGGCACCGCTCGCAGCACCGTCGT
Right flanking sequence: Indices 89171 -- 89670
ACCCTGCCCCCAGCACCGCCCCCAGCACCGCCCCGGCCCCCACCAGCCCTGCTCCCAGCCCCACC
TTCACCCCCCCCGCGCGCGTCCATACCATCCCCCTGAGCATCTCAGCAATGGTGGCAGAAAATAA
TTAGTTGCTTTTTCCCCGCGGATGGTGCGGCCGCCGTCCCCCATTTTTGACCCCCGGTGCGCGCA
CCTCTCCTCCTCATGTCGTCGCCGTTGTTCCCCCAGGCGAGGCTCACGATGCTGCCCGGGCCGGC
CCGCGGCGGCGCCGGTGCCGACGACGTGTGGGTGCCGCAGTTGCCCGACCGGCCCCTCACCCAGA
CGCTGCTGCTCCAGATCTACATCGTGCCCGCGGAGAAGCACTTGTTCGTCCAGGGGTTCGAGCCC
CACGAGTACGAGAACCGCCCGCCCGCCCTCTTGCGCGGCTGCCTCGTGCTCCGCGTGCTCAAGCC
CACCAAGCTCAAGCTGGTGGTGCTCACGTTCCGCGGGCACCAGCG
Found at i:89204 original size:11 final size:12
Alignment explanation
Indices: 89176--89204 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
89166 CACCAACCCT
89176 GCCCCCAGCACC
1 GCCCCCAGCACC
89188 GCCCCCAGCACC
1 GCCCCCAGCACC
89200 GCCCC
1 GCCCC
89205 GGCCCCCACC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.14, C:0.69, G:0.17, T:0.00
Consensus pattern (12 bp):
GCCCCCAGCACC
Left flanking sequence: Indices 88676 -- 89175
GATCAGAGACCAAACCAGAAACACCAGCCAGACTAGAAACACCACCCATTCCAACCAGATCATCC
CCTGTAGAAACACCCTTCCCTCTCTTCTTCTCCCCCTTGTCCCCTTTCTTCTCTCCCCTCCCCTT
CAAAAGCTTTGCCCGGTGGCCCTCCAGCTTCGGGGCCCGCTCGTACGCAGCAGCCGCCCACGCGG
CAAAGTCAAACGCCCCGTCGTCCATCCGCTGCTCGAGCTCGCGCACCACCAGCCCGTCCGTCACC
ACCACCTTGGGCACCGCCACCCACCCGTGCCGCGTGTACACGGGCATCCACTGCGCGGGCTCCGT
CGCCAACGGCGGCACCGTCCGCAGCGACTTCAGCACCGCTCGCAGCACTGACCGCACCGGCACCG
CTCGCAGCACCGTCGTCAGCACCGCTCGCACCAGCACCGACATCAGCAACGCTCGCACCGGCACC
GCTCGCACCGACACCGATCGCATCGGCACCGCTCGCACCAACCCT
Right flanking sequence: Indices 89205 -- 89704
GGCCCCCACCAGCCCTGCTCCCAGCCCCACCTTCACCCCCCCCGCGCGCGTCCATACCATCCCCC
TGAGCATCTCAGCAATGGTGGCAGAAAATAATTAGTTGCTTTTTCCCCGCGGATGGTGCGGCCGC
CGTCCCCCATTTTTGACCCCCGGTGCGCGCACCTCTCCTCCTCATGTCGTCGCCGTTGTTCCCCC
AGGCGAGGCTCACGATGCTGCCCGGGCCGGCCCGCGGCGGCGCCGGTGCCGACGACGTGTGGGTG
CCGCAGTTGCCCGACCGGCCCCTCACCCAGACGCTGCTGCTCCAGATCTACATCGTGCCCGCGGA
GAAGCACTTGTTCGTCCAGGGGTTCGAGCCCCACGAGTACGAGAACCGCCCGCCCGCCCTCTTGC
GCGGCTGCCTCGTGCTCCGCGTGCTCAAGCCCACCAAGCTCAAGCTGGTGGTGCTCACGTTCCGC
GGGCACCAGCGCACGGAGTGGCCCGAGGGCATCCCCCCGAAAAAG
Found at i:89979 original size:3 final size:3
Alignment explanation
Indices: 89971--90023 Score: 52
Period size: 3 Copynumber: 17.7 Consensus size: 3
89961 CGGGCGGTTT
** * * * *
89971 TGG TGG TGG TGG TTT TGG TGG AGG TGC TGG TGG AGG TGC TGG TGG TGG
1 TGG TGG TGG TGG TGG TGG TGG TGG TGG TGG TGG TGG TGG TGG TGG TGG
90019 TGG TG
1 TGG TG
90024 CCAGTTCTGA
Statistics
Matches: 38, Mismatches: 12, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.04, C:0.04, G:0.58, T:0.34
Consensus pattern (3 bp):
TGG
Left flanking sequence: Indices 89471 -- 89970
TTGCCCGACCGGCCCCTCACCCAGACGCTGCTGCTCCAGATCTACATCGTGCCCGCGGAGAAGCA
CTTGTTCGTCCAGGGGTTCGAGCCCCACGAGTACGAGAACCGCCCGCCCGCCCTCTTGCGCGGCT
GCCTCGTGCTCCGCGTGCTCAAGCCCACCAAGCTCAAGCTGGTGGTGCTCACGTTCCGCGGGCAC
CAGCGCACGGAGTGGCCCGAGGGCATCCCCCCGAAAAAGAGCCAGCACCAGGAGACCAACCCCAT
CGTCACCCACGCGTGGCCGTTCTTCCAGGCGCTGGTGCTGACGCTGGCCCACAACGGCGCCGACT
TCTTCCGCGACCCGCTGGGCGCCTGCCACCGCCGCGACCCGCTGCCGGCCCGCTCGCAGCTGCCG
GCCCCAGAGCTGTTCTTGCTGCTGTTGCTGCCGCCGTTCATGCGCCGGGGCACCCTGCCCGCGCC
CCAGGCCGAGCGGCTGCCCGACCGGCTGCCCTCCGCGGGCGGTTT
Right flanking sequence: Indices 90024 -- 90523
CCAGTTCTGAGCCCGGCGTGTTTGCCGTGGGCGACTACGTGTACAACTTCGAGCACCCCGTCCGC
CCGTCCATCCCCGAGCTGTGCCTGGTGACGTTTGGGCTGGTGCTCTACTTCCTCGAGGCCACCGT
GGGCCGGGCCGGCGCGTTCAAGCCCAACGTGGTGGCCAAGCTCCCGGTGCAGATCGTGCGCACCC
CGCTGCCGATGAGCCTCGAGGAGAACGAGCCCATCGTCATCACCCGCGACTGGGAGGACCAGTTG
CGCTACGAGATCGTCGTGGGCGGCAAGCTGGTGGTGTTGGACGCATACTTGCCGCTCGCGTTCCG
GTTCGTGCCGTTGTGGGGCAAGGTGCAGTTGCACCGGATCCGGGTGTACATGACGGAGAACATCG
AGTACTACTGCTCCAACAAGAAGGTGCACCGGTTGGAGCCGCAGAAGAAGTACCTCCTTTTGGAG
CACAAGGCCACCAAGGGCCGCTCGTTGCTCGGCCACTCCCCGCTC
Found at i:89986 original size:15 final size:15
Alignment explanation
Indices: 89966--89996 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
89956 CTCCGCGGGC
*
89966 GGTTTTGGTGGTGGT
1 GGTTTTGGTGGAGGT
89981 GGTTTTGGTGGAGGT
1 GGTTTTGGTGGAGGT
89996 G
1 G
89997 CTGGTGGAGG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.03, C:0.00, G:0.55, T:0.42
Consensus pattern (15 bp):
GGTTTTGGTGGAGGT
Left flanking sequence: Indices 89466 -- 89965
CGCAGTTGCCCGACCGGCCCCTCACCCAGACGCTGCTGCTCCAGATCTACATCGTGCCCGCGGAG
AAGCACTTGTTCGTCCAGGGGTTCGAGCCCCACGAGTACGAGAACCGCCCGCCCGCCCTCTTGCG
CGGCTGCCTCGTGCTCCGCGTGCTCAAGCCCACCAAGCTCAAGCTGGTGGTGCTCACGTTCCGCG
GGCACCAGCGCACGGAGTGGCCCGAGGGCATCCCCCCGAAAAAGAGCCAGCACCAGGAGACCAAC
CCCATCGTCACCCACGCGTGGCCGTTCTTCCAGGCGCTGGTGCTGACGCTGGCCCACAACGGCGC
CGACTTCTTCCGCGACCCGCTGGGCGCCTGCCACCGCCGCGACCCGCTGCCGGCCCGCTCGCAGC
TGCCGGCCCCAGAGCTGTTCTTGCTGCTGTTGCTGCCGCCGTTCATGCGCCGGGGCACCCTGCCC
GCGCCCCAGGCCGAGCGGCTGCCCGACCGGCTGCCCTCCGCGGGC
Right flanking sequence: Indices 89997 -- 90496
CTGGTGGAGGTGCTGGTGGTGGTGGTGCCAGTTCTGAGCCCGGCGTGTTTGCCGTGGGCGACTAC
GTGTACAACTTCGAGCACCCCGTCCGCCCGTCCATCCCCGAGCTGTGCCTGGTGACGTTTGGGCT
GGTGCTCTACTTCCTCGAGGCCACCGTGGGCCGGGCCGGCGCGTTCAAGCCCAACGTGGTGGCCA
AGCTCCCGGTGCAGATCGTGCGCACCCCGCTGCCGATGAGCCTCGAGGAGAACGAGCCCATCGTC
ATCACCCGCGACTGGGAGGACCAGTTGCGCTACGAGATCGTCGTGGGCGGCAAGCTGGTGGTGTT
GGACGCATACTTGCCGCTCGCGTTCCGGTTCGTGCCGTTGTGGGGCAAGGTGCAGTTGCACCGGA
TCCGGGTGTACATGACGGAGAACATCGAGTACTACTGCTCCAACAAGAAGGTGCACCGGTTGGAG
CCGCAGAAGAAGTACCTCCTTTTGGAGCACAAGGCCACCAAGGGC
Found at i:89991 original size:12 final size:12
Alignment explanation
Indices: 89986--90020 Score: 61
Period size: 12 Copynumber: 2.9 Consensus size: 12
89976 GTGGTGGTTT
89986 TGGTGGAGGTGC
1 TGGTGGAGGTGC
89998 TGGTGGAGGTGC
1 TGGTGGAGGTGC
*
90010 TGGTGGTGGTG
1 TGGTGGAGGTG
90021 GTGCCAGTTC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.06, C:0.06, G:0.60, T:0.29
Consensus pattern (12 bp):
TGGTGGAGGTGC
Left flanking sequence: Indices 89486 -- 89985
CTCACCCAGACGCTGCTGCTCCAGATCTACATCGTGCCCGCGGAGAAGCACTTGTTCGTCCAGGG
GTTCGAGCCCCACGAGTACGAGAACCGCCCGCCCGCCCTCTTGCGCGGCTGCCTCGTGCTCCGCG
TGCTCAAGCCCACCAAGCTCAAGCTGGTGGTGCTCACGTTCCGCGGGCACCAGCGCACGGAGTGG
CCCGAGGGCATCCCCCCGAAAAAGAGCCAGCACCAGGAGACCAACCCCATCGTCACCCACGCGTG
GCCGTTCTTCCAGGCGCTGGTGCTGACGCTGGCCCACAACGGCGCCGACTTCTTCCGCGACCCGC
TGGGCGCCTGCCACCGCCGCGACCCGCTGCCGGCCCGCTCGCAGCTGCCGGCCCCAGAGCTGTTC
TTGCTGCTGTTGCTGCCGCCGTTCATGCGCCGGGGCACCCTGCCCGCGCCCCAGGCCGAGCGGCT
GCCCGACCGGCTGCCCTCCGCGGGCGGTTTTGGTGGTGGTGGTTT
Right flanking sequence: Indices 90021 -- 90520
GTGCCAGTTCTGAGCCCGGCGTGTTTGCCGTGGGCGACTACGTGTACAACTTCGAGCACCCCGTC
CGCCCGTCCATCCCCGAGCTGTGCCTGGTGACGTTTGGGCTGGTGCTCTACTTCCTCGAGGCCAC
CGTGGGCCGGGCCGGCGCGTTCAAGCCCAACGTGGTGGCCAAGCTCCCGGTGCAGATCGTGCGCA
CCCCGCTGCCGATGAGCCTCGAGGAGAACGAGCCCATCGTCATCACCCGCGACTGGGAGGACCAG
TTGCGCTACGAGATCGTCGTGGGCGGCAAGCTGGTGGTGTTGGACGCATACTTGCCGCTCGCGTT
CCGGTTCGTGCCGTTGTGGGGCAAGGTGCAGTTGCACCGGATCCGGGTGTACATGACGGAGAACA
TCGAGTACTACTGCTCCAACAAGAAGGTGCACCGGTTGGAGCCGCAGAAGAAGTACCTCCTTTTG
GAGCACAAGGCCACCAAGGGCCGCTCGTTGCTCGGCCACTCCCCG
Found at i:91041 original size:18 final size:18
Alignment explanation
Indices: 91018--91056 Score: 69
Period size: 18 Copynumber: 2.2 Consensus size: 18
91008 CAACGTCGCT
*
91018 GTTTCCTTCGCTGTCCCC
1 GTTTCCCTCGCTGTCCCC
91036 GTTTCCCTCGCTGTCCCC
1 GTTTCCCTCGCTGTCCCC
91054 GTT
1 GTT
91057 GCACCACTCG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.00, C:0.44, G:0.18, T:0.38
Consensus pattern (18 bp):
GTTTCCCTCGCTGTCCCC
Left flanking sequence: Indices 90518 -- 91017
CCGCTCGCGCCCGGGCCCGCCCCCCAGGACGACGAGATCTTGGCCAAGGAGCTCGAGTTCCAGTT
GTACGTGCCGCTGAAGTTCCCCAACAAGCCCGGGCTGGCCCTCCATCCCGACACCCTGTTCGAAA
ACATCCAGGTGCACCACTGGATCAAGATCTGCTTGCGGATCCTGCGCACCGACCCGGAGCGCCCG
GACAAGCGCAAGCACTACGAGATCCTGATCGACCTGCCCATCCACTTGTTGCTGCCGTTGGCGGC
CCACGGCAACACGTTGTTGCCCGCGTACGACGCGGCGGTGCCAGCCCTGGCAGCACCCGGCGGCG
CCCCGGTGCTCCCGGACTACACCCAGACGCCTCCGATGCTGCCCGGGGTCACGCCGGTGGAGCTG
CTGCCCCGCCAGCGGAGTGCCACCACCGGTGCCACCCTGGCACGTGGGACCGCTGCCACCCTGCT
GATGGTGCGTGGGCTCTTTGCCCTGCAACAGCCTCCAACGTCGCT
Right flanking sequence: Indices 91057 -- 91556
GCACCACTCGCTGCTGGAGCCCAACTTCGCCTTCATGCACATCAACCTGAGCCAGGGCAACGACG
AGCCCATCGTGCGCGAGGCGGACATGCACTTGGAGCTGAACCTCTACCACCCGACGGCGGACCTG
TTCTGCCAGGCGCTCGCGCTGCCCCAGGCGACGCCGGCGCCGATGCTGCCGCTCTCCCCGCCGTT
GCTGAGACCCATCCACTTGCTCCGCAAGCCGCTGGTGAACCCGCCGCCGTTCGAGGCGGACGTGG
CGCCGCCGCCCATCGGGACCACGCTCCCGCCCGCGTACGAGGAGCGCGACCCGAGCTTGCTGCCG
TTGCGGATGGAGCCGGGGCCGTTGCGGGTGGACGCGAGCTTGCTGCCGTTGCGGATCGACGACCT
GGGGCTGCCGTTGCCGCGGGACCGGCTGCGGACGACGATAGGCGGGGTGCTCCGTGGCGGGGCTG
GCGAGGAGGGGGGTGTCAAGGAGTTGTTGCGGCAGCAGTTGGCGG
Found at i:91786 original size:15 final size:15
Alignment explanation
Indices: 91753--91788 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
91743 AGAGCCAGGT
**
91753 GGGTGGAAGCCAGGT
1 GGGTGGAAGCCAGAC
91768 GGGTGGAAGCCAGAC
1 GGGTGGAAGCCAGAC
91783 GGGTGG
1 GGGTGG
91789 CCCGACGGGT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.19, C:0.14, G:0.56, T:0.11
Consensus pattern (15 bp):
GGGTGGAAGCCAGAC
Left flanking sequence: Indices 91253 -- 91752
CTGAGACCCATCCACTTGCTCCGCAAGCCGCTGGTGAACCCGCCGCCGTTCGAGGCGGACGTGGC
GCCGCCGCCCATCGGGACCACGCTCCCGCCCGCGTACGAGGAGCGCGACCCGAGCTTGCTGCCGT
TGCGGATGGAGCCGGGGCCGTTGCGGGTGGACGCGAGCTTGCTGCCGTTGCGGATCGACGACCTG
GGGCTGCCGTTGCCGCGGGACCGGCTGCGGACGACGATAGGCGGGGTGCTCCGTGGCGGGGCTGG
CGAGGAGGGGGGTGTCAAGGAGTTGTTGCGGCAGCAGTTGGCGGACGGGCGCCACCGCAGCGTGA
GCGAGCCCGGGAAGGCGCGGGGGGTGGCGGTGCGGCCGCCCACGCTGCCTATCCGAGAGGCTACG
CAGTCTCCTGAGCCCACCACCGAGCCGGAGGCGAAGGTGGTGGGTGGAGGCCAGGCTGGTGGGGG
GCAGGTGAGTGGAGAGACGGGTGGAGAAGCGAGAGAGAGCCAGGT
Right flanking sequence: Indices 91789 -- 92288
CCCGACGGGTGGAGTGCCTGCGGTGACCGTGGACAGCGCGTCGGAGGTGGAGCGACAGACACGCG
GACGGCTGGCAACGCCTGGAAGTCTTGGGAGAGACGAGGAGAAGAGAGAAGAGAGAGAAGAGAGA
GAAGCAAGAGAAGGAAGAGAAGGAAGAGAAGGAAGAGAGGAGAGTTTGAGAGGAGACAGAGAAAT
CGTGAGAGGAGACAGAGAGACCGGGATTGGAGAGAACGGGTCCAGAGAGAACGGGTCTAGAGTGT
CTAGAGAGAACGATTCCAGAGAGAACGATTCCAGAGAAACGAACCCTCGAGAAGTGACCTCTGGA
GTGTCTTCTGACACCCTTCGTCACGGAAGCACCGTCCTGGACGACGCCTTCGAGGACACCCGCGA
AACCTTCGACTCTCCTGACCACCGCGACTCGTCCCTCCACCAGAGCTCGTCCCAGGACACCGAGA
CAGGCGACCCAGCCGACCCAGACTCGGCACTCGTCCCGACATCCT
Found at i:91788 original size:19 final size:15
Alignment explanation
Indices: 91745--91780 Score: 72
Period size: 15 Copynumber: 2.4 Consensus size: 15
91735 AGCGAGAGAG
91745 AGCCAGGTGGGTGGA
1 AGCCAGGTGGGTGGA
91760 AGCCAGGTGGGTGGA
1 AGCCAGGTGGGTGGA
91775 AGCCAG
1 AGCCAG
91781 ACGGGTGGCC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.22, C:0.17, G:0.50, T:0.11
Consensus pattern (15 bp):
AGCCAGGTGGGTGGA
Left flanking sequence: Indices 91245 -- 91744
CGCCGTTGCTGAGACCCATCCACTTGCTCCGCAAGCCGCTGGTGAACCCGCCGCCGTTCGAGGCG
GACGTGGCGCCGCCGCCCATCGGGACCACGCTCCCGCCCGCGTACGAGGAGCGCGACCCGAGCTT
GCTGCCGTTGCGGATGGAGCCGGGGCCGTTGCGGGTGGACGCGAGCTTGCTGCCGTTGCGGATCG
ACGACCTGGGGCTGCCGTTGCCGCGGGACCGGCTGCGGACGACGATAGGCGGGGTGCTCCGTGGC
GGGGCTGGCGAGGAGGGGGGTGTCAAGGAGTTGTTGCGGCAGCAGTTGGCGGACGGGCGCCACCG
CAGCGTGAGCGAGCCCGGGAAGGCGCGGGGGGTGGCGGTGCGGCCGCCCACGCTGCCTATCCGAG
AGGCTACGCAGTCTCCTGAGCCCACCACCGAGCCGGAGGCGAAGGTGGTGGGTGGAGGCCAGGCT
GGTGGGGGGCAGGTGAGTGGAGAGACGGGTGGAGAAGCGAGAGAG
Right flanking sequence: Indices 91781 -- 92280
ACGGGTGGCCCGACGGGTGGAGTGCCTGCGGTGACCGTGGACAGCGCGTCGGAGGTGGAGCGACA
GACACGCGGACGGCTGGCAACGCCTGGAAGTCTTGGGAGAGACGAGGAGAAGAGAGAAGAGAGAG
AAGAGAGAGAAGCAAGAGAAGGAAGAGAAGGAAGAGAAGGAAGAGAGGAGAGTTTGAGAGGAGAC
AGAGAAATCGTGAGAGGAGACAGAGAGACCGGGATTGGAGAGAACGGGTCCAGAGAGAACGGGTC
TAGAGTGTCTAGAGAGAACGATTCCAGAGAGAACGATTCCAGAGAAACGAACCCTCGAGAAGTGA
CCTCTGGAGTGTCTTCTGACACCCTTCGTCACGGAAGCACCGTCCTGGACGACGCCTTCGAGGAC
ACCCGCGAAACCTTCGACTCTCCTGACCACCGCGACTCGTCCCTCCACCAGAGCTCGTCCCAGGA
CACCGAGACAGGCGACCCAGCCGACCCAGACTCGGCACTCGTCCC
Found at i:91910 original size:9 final size:9
Alignment explanation
Indices: 91896--91962 Score: 61
Period size: 9 Copynumber: 7.4 Consensus size: 9
91886 GACGAGGAGA
91896 AGAGAGAAG
1 AGAGAGAAG
91905 AGAGAGAAG
1 AGAGAGAAG
91914 AGAGAGAAG
1 AGAGAGAAG
91923 CA-AGAGAAG
1 -AGAGAGAAG
91932 -GAAGAGAAG
1 AG-AGAGAAG
91941 -GAAGAGAAG
1 AG-AGAGAAG
*
91950 -GAAGAGAGG
1 AG-AGAGAAG
91959 AGAG
1 AGAG
91963 TTTGAGAGGA
Statistics
Matches: 53, Mismatches: 1, Indels: 8
0.85 0.02 0.13
Matches are distributed among these distances:
9 51 0.96
10 2 0.04
ACGTcount: A:0.54, C:0.01, G:0.45, T:0.00
Consensus pattern (9 bp):
AGAGAGAAG
Left flanking sequence: Indices 91396 -- 91895
GGGGCCGTTGCGGGTGGACGCGAGCTTGCTGCCGTTGCGGATCGACGACCTGGGGCTGCCGTTGC
CGCGGGACCGGCTGCGGACGACGATAGGCGGGGTGCTCCGTGGCGGGGCTGGCGAGGAGGGGGGT
GTCAAGGAGTTGTTGCGGCAGCAGTTGGCGGACGGGCGCCACCGCAGCGTGAGCGAGCCCGGGAA
GGCGCGGGGGGTGGCGGTGCGGCCGCCCACGCTGCCTATCCGAGAGGCTACGCAGTCTCCTGAGC
CCACCACCGAGCCGGAGGCGAAGGTGGTGGGTGGAGGCCAGGCTGGTGGGGGGCAGGTGAGTGGA
GAGACGGGTGGAGAAGCGAGAGAGAGCCAGGTGGGTGGAAGCCAGGTGGGTGGAAGCCAGACGGG
TGGCCCGACGGGTGGAGTGCCTGCGGTGACCGTGGACAGCGCGTCGGAGGTGGAGCGACAGACAC
GCGGACGGCTGGCAACGCCTGGAAGTCTTGGGAGAGACGAGGAGA
Right flanking sequence: Indices 91963 -- 92462
TTTGAGAGGAGACAGAGAAATCGTGAGAGGAGACAGAGAGACCGGGATTGGAGAGAACGGGTCCA
GAGAGAACGGGTCTAGAGTGTCTAGAGAGAACGATTCCAGAGAGAACGATTCCAGAGAAACGAAC
CCTCGAGAAGTGACCTCTGGAGTGTCTTCTGACACCCTTCGTCACGGAAGCACCGTCCTGGACGA
CGCCTTCGAGGACACCCGCGAAACCTTCGACTCTCCTGACCACCGCGACTCGTCCCTCCACCAGA
GCTCGTCCCAGGACACCGAGACAGGCGACCCAGCCGACCCAGACTCGGCACTCGTCCCGACATCC
TCACCGGTGGTGTTCTCAAAACCCCCCACTTCGCCCCCCACCTCGCCCCCCACTTCTTCCACCTC
ACCCCCCACTTCCCCCCCACTCGACCGCCACCTCACCCTCGAGCTGGAGAACGACCTCGTCAACT
CGCCGTCGCTGCCCATCCACGCGCCCCACAACCCCACCGCGTCCA
Found at i:91919 original size:18 final size:18
Alignment explanation
Indices: 91898--91962 Score: 73
Period size: 18 Copynumber: 3.6 Consensus size: 18
91888 CGAGGAGAAG
91898 AGAGAAGAGAGAGAA-GA
1 AGAGAAGAGAGAGAAGGA
91915 GAGAGAAGCA-AGAGAAGGA
1 -AGAGAAG-AGAGAGAAGGA
91934 AGAGAAG-GAAGAGAAGGA
1 AGAGAAGAG-AGAGAAGGA
*
91952 AGAGAGGAGAG
1 AGAGAAGAGAG
91963 TTTGAGAGGA
Statistics
Matches: 41, Mismatches: 1, Indels: 10
0.79 0.02 0.19
Matches are distributed among these distances:
18 37 0.90
19 4 0.10
ACGTcount: A:0.54, C:0.02, G:0.45, T:0.00
Consensus pattern (18 bp):
AGAGAAGAGAGAGAAGGA
Left flanking sequence: Indices 91398 -- 91897
GGCCGTTGCGGGTGGACGCGAGCTTGCTGCCGTTGCGGATCGACGACCTGGGGCTGCCGTTGCCG
CGGGACCGGCTGCGGACGACGATAGGCGGGGTGCTCCGTGGCGGGGCTGGCGAGGAGGGGGGTGT
CAAGGAGTTGTTGCGGCAGCAGTTGGCGGACGGGCGCCACCGCAGCGTGAGCGAGCCCGGGAAGG
CGCGGGGGGTGGCGGTGCGGCCGCCCACGCTGCCTATCCGAGAGGCTACGCAGTCTCCTGAGCCC
ACCACCGAGCCGGAGGCGAAGGTGGTGGGTGGAGGCCAGGCTGGTGGGGGGCAGGTGAGTGGAGA
GACGGGTGGAGAAGCGAGAGAGAGCCAGGTGGGTGGAAGCCAGGTGGGTGGAAGCCAGACGGGTG
GCCCGACGGGTGGAGTGCCTGCGGTGACCGTGGACAGCGCGTCGGAGGTGGAGCGACAGACACGC
GGACGGCTGGCAACGCCTGGAAGTCTTGGGAGAGACGAGGAGAAG
Right flanking sequence: Indices 91963 -- 92462
TTTGAGAGGAGACAGAGAAATCGTGAGAGGAGACAGAGAGACCGGGATTGGAGAGAACGGGTCCA
GAGAGAACGGGTCTAGAGTGTCTAGAGAGAACGATTCCAGAGAGAACGATTCCAGAGAAACGAAC
CCTCGAGAAGTGACCTCTGGAGTGTCTTCTGACACCCTTCGTCACGGAAGCACCGTCCTGGACGA
CGCCTTCGAGGACACCCGCGAAACCTTCGACTCTCCTGACCACCGCGACTCGTCCCTCCACCAGA
GCTCGTCCCAGGACACCGAGACAGGCGACCCAGCCGACCCAGACTCGGCACTCGTCCCGACATCC
TCACCGGTGGTGTTCTCAAAACCCCCCACTTCGCCCCCCACCTCGCCCCCCACTTCTTCCACCTC
ACCCCCCACTTCCCCCCCACTCGACCGCCACCTCACCCTCGAGCTGGAGAACGACCTCGTCAACT
CGCCGTCGCTGCCCATCCACGCGCCCCACAACCCCACCGCGTCCA
Found at i:92045 original size:13 final size:15
Alignment explanation
Indices: 92013--92045 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
92003 ACCGGGATTG
92013 GAGAGAACGGGTCCA
1 GAGAGAACGGGTCCA
*
92028 GAGAGAACGGGTCTA
1 GAGAGAACGGGTCCA
92043 GAG
1 GAG
92046 TGTCTAGAGA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.33, C:0.15, G:0.42, T:0.09
Consensus pattern (15 bp):
GAGAGAACGGGTCCA
Left flanking sequence: Indices 91513 -- 92012
CGAGGAGGGGGGTGTCAAGGAGTTGTTGCGGCAGCAGTTGGCGGACGGGCGCCACCGCAGCGTGA
GCGAGCCCGGGAAGGCGCGGGGGGTGGCGGTGCGGCCGCCCACGCTGCCTATCCGAGAGGCTACG
CAGTCTCCTGAGCCCACCACCGAGCCGGAGGCGAAGGTGGTGGGTGGAGGCCAGGCTGGTGGGGG
GCAGGTGAGTGGAGAGACGGGTGGAGAAGCGAGAGAGAGCCAGGTGGGTGGAAGCCAGGTGGGTG
GAAGCCAGACGGGTGGCCCGACGGGTGGAGTGCCTGCGGTGACCGTGGACAGCGCGTCGGAGGTG
GAGCGACAGACACGCGGACGGCTGGCAACGCCTGGAAGTCTTGGGAGAGACGAGGAGAAGAGAGA
AGAGAGAGAAGAGAGAGAAGCAAGAGAAGGAAGAGAAGGAAGAGAAGGAAGAGAGGAGAGTTTGA
GAGGAGACAGAGAAATCGTGAGAGGAGACAGAGAGACCGGGATTG
Right flanking sequence: Indices 92046 -- 92545
TGTCTAGAGAGAACGATTCCAGAGAGAACGATTCCAGAGAAACGAACCCTCGAGAAGTGACCTCT
GGAGTGTCTTCTGACACCCTTCGTCACGGAAGCACCGTCCTGGACGACGCCTTCGAGGACACCCG
CGAAACCTTCGACTCTCCTGACCACCGCGACTCGTCCCTCCACCAGAGCTCGTCCCAGGACACCG
AGACAGGCGACCCAGCCGACCCAGACTCGGCACTCGTCCCGACATCCTCACCGGTGGTGTTCTCA
AAACCCCCCACTTCGCCCCCCACCTCGCCCCCCACTTCTTCCACCTCACCCCCCACTTCCCCCCC
ACTCGACCGCCACCTCACCCTCGAGCTGGAGAACGACCTCGTCAACTCGCCGTCGCTGCCCATCC
ACGCGCCCCACAACCCCACCGCGTCCATGCGCACCCTCTCGCCCCAGCGCCGGGCCGCGCTGCGT
CGCTCGCTGGCCCTGCTGTTCACCCTGGAGTTCGAGGTGCCCCAC
Found at i:92071 original size:15 final size:15
Alignment explanation
Indices: 92051--92090 Score: 73
Period size: 15 Copynumber: 2.7 Consensus size: 15
92041 TAGAGTGTCT
92051 AGAGAGAACGATTCC
1 AGAGAGAACGATTCC
92066 AGAGAGAACGATTCC
1 AGAGAGAACGATTCC
92081 AGAGA-AACGA
1 AGAGAGAACGA
92091 ACCCTCGAGA
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
14 5 0.20
15 20 0.80
ACGTcount: A:0.45, C:0.17, G:0.28, T:0.10
Consensus pattern (15 bp):
AGAGAGAACGATTCC
Left flanking sequence: Indices 91551 -- 92050
TGGCGGACGGGCGCCACCGCAGCGTGAGCGAGCCCGGGAAGGCGCGGGGGGTGGCGGTGCGGCCG
CCCACGCTGCCTATCCGAGAGGCTACGCAGTCTCCTGAGCCCACCACCGAGCCGGAGGCGAAGGT
GGTGGGTGGAGGCCAGGCTGGTGGGGGGCAGGTGAGTGGAGAGACGGGTGGAGAAGCGAGAGAGA
GCCAGGTGGGTGGAAGCCAGGTGGGTGGAAGCCAGACGGGTGGCCCGACGGGTGGAGTGCCTGCG
GTGACCGTGGACAGCGCGTCGGAGGTGGAGCGACAGACACGCGGACGGCTGGCAACGCCTGGAAG
TCTTGGGAGAGACGAGGAGAAGAGAGAAGAGAGAGAAGAGAGAGAAGCAAGAGAAGGAAGAGAAG
GAAGAGAAGGAAGAGAGGAGAGTTTGAGAGGAGACAGAGAAATCGTGAGAGGAGACAGAGAGACC
GGGATTGGAGAGAACGGGTCCAGAGAGAACGGGTCTAGAGTGTCT
Right flanking sequence: Indices 92091 -- 92590
ACCCTCGAGAAGTGACCTCTGGAGTGTCTTCTGACACCCTTCGTCACGGAAGCACCGTCCTGGAC
GACGCCTTCGAGGACACCCGCGAAACCTTCGACTCTCCTGACCACCGCGACTCGTCCCTCCACCA
GAGCTCGTCCCAGGACACCGAGACAGGCGACCCAGCCGACCCAGACTCGGCACTCGTCCCGACAT
CCTCACCGGTGGTGTTCTCAAAACCCCCCACTTCGCCCCCCACCTCGCCCCCCACTTCTTCCACC
TCACCCCCCACTTCCCCCCCACTCGACCGCCACCTCACCCTCGAGCTGGAGAACGACCTCGTCAA
CTCGCCGTCGCTGCCCATCCACGCGCCCCACAACCCCACCGCGTCCATGCGCACCCTCTCGCCCC
AGCGCCGGGCCGCGCTGCGTCGCTCGCTGGCCCTGCTGTTCACCCTGGAGTTCGAGGTGCCCCAC
GAGCAGACAATGCCGTTGCTCACCCACTCGCAGCTGCTGATCGGA
Found at i:92326 original size:12 final size:12
Alignment explanation
Indices: 92309--92343 Score: 61
Period size: 12 Copynumber: 2.9 Consensus size: 12
92299 GTTCTCAAAA
92309 CCCCCCACTTCG
1 CCCCCCACTTCG
*
92321 CCCCCCACCTCG
1 CCCCCCACTTCG
92333 CCCCCCACTTC
1 CCCCCCACTTC
92344 TTCCACCTCA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.09, C:0.71, G:0.06, T:0.14
Consensus pattern (12 bp):
CCCCCCACTTCG
Left flanking sequence: Indices 91809 -- 92308
CGGTGACCGTGGACAGCGCGTCGGAGGTGGAGCGACAGACACGCGGACGGCTGGCAACGCCTGGA
AGTCTTGGGAGAGACGAGGAGAAGAGAGAAGAGAGAGAAGAGAGAGAAGCAAGAGAAGGAAGAGA
AGGAAGAGAAGGAAGAGAGGAGAGTTTGAGAGGAGACAGAGAAATCGTGAGAGGAGACAGAGAGA
CCGGGATTGGAGAGAACGGGTCCAGAGAGAACGGGTCTAGAGTGTCTAGAGAGAACGATTCCAGA
GAGAACGATTCCAGAGAAACGAACCCTCGAGAAGTGACCTCTGGAGTGTCTTCTGACACCCTTCG
TCACGGAAGCACCGTCCTGGACGACGCCTTCGAGGACACCCGCGAAACCTTCGACTCTCCTGACC
ACCGCGACTCGTCCCTCCACCAGAGCTCGTCCCAGGACACCGAGACAGGCGACCCAGCCGACCCA
GACTCGGCACTCGTCCCGACATCCTCACCGGTGGTGTTCTCAAAA
Right flanking sequence: Indices 92344 -- 92843
TTCCACCTCACCCCCCACTTCCCCCCCACTCGACCGCCACCTCACCCTCGAGCTGGAGAACGACC
TCGTCAACTCGCCGTCGCTGCCCATCCACGCGCCCCACAACCCCACCGCGTCCATGCGCACCCTC
TCGCCCCAGCGCCGGGCCGCGCTGCGTCGCTCGCTGGCCCTGCTGTTCACCCTGGAGTTCGAGGT
GCCCCACGAGCAGACAATGCCGTTGCTCACCCACTCGCAGCTGCTGATCGGAGTGACCCTCCACC
CCAACGTCAGCGCCACCACCACCGCGCTGGGGCCCTACCGCAACCAGAACACCTCCAACGGGCTG
TTGACCGACTGGGAAATGCGGATGCCCCGCCCACCGTACGAACCCATGTCCACCATCATGGACCT
CGGCGAGGTCCCGGTGGACATGAAGTTGCTGCAGCTCCGCAACCCACGGGTGCACCCGCCGCTGG
CGGTGTACACCAAGCACGCGGACTCGCAGGCGTACGCCAGCCACC
Found at i:92351 original size:21 final size:21
Alignment explanation
Indices: 92325--92364 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
92315 ACTTCGCCCC
*
92325 CCACCTCGCCCCCCACTTCTT
1 CCACCTCACCCCCCACTTCTT
92346 CCACCTCACCCCCCACTTC
1 CCACCTCACCCCCCACTTC
92365 CCCCCCACTC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.12, C:0.65, G:0.03, T:0.20
Consensus pattern (21 bp):
CCACCTCACCCCCCACTTCTT
Left flanking sequence: Indices 91825 -- 92324
CGCGTCGGAGGTGGAGCGACAGACACGCGGACGGCTGGCAACGCCTGGAAGTCTTGGGAGAGACG
AGGAGAAGAGAGAAGAGAGAGAAGAGAGAGAAGCAAGAGAAGGAAGAGAAGGAAGAGAAGGAAGA
GAGGAGAGTTTGAGAGGAGACAGAGAAATCGTGAGAGGAGACAGAGAGACCGGGATTGGAGAGAA
CGGGTCCAGAGAGAACGGGTCTAGAGTGTCTAGAGAGAACGATTCCAGAGAGAACGATTCCAGAG
AAACGAACCCTCGAGAAGTGACCTCTGGAGTGTCTTCTGACACCCTTCGTCACGGAAGCACCGTC
CTGGACGACGCCTTCGAGGACACCCGCGAAACCTTCGACTCTCCTGACCACCGCGACTCGTCCCT
CCACCAGAGCTCGTCCCAGGACACCGAGACAGGCGACCCAGCCGACCCAGACTCGGCACTCGTCC
CGACATCCTCACCGGTGGTGTTCTCAAAACCCCCCACTTCGCCCC
Right flanking sequence: Indices 92365 -- 92864
CCCCCCACTCGACCGCCACCTCACCCTCGAGCTGGAGAACGACCTCGTCAACTCGCCGTCGCTGC
CCATCCACGCGCCCCACAACCCCACCGCGTCCATGCGCACCCTCTCGCCCCAGCGCCGGGCCGCG
CTGCGTCGCTCGCTGGCCCTGCTGTTCACCCTGGAGTTCGAGGTGCCCCACGAGCAGACAATGCC
GTTGCTCACCCACTCGCAGCTGCTGATCGGAGTGACCCTCCACCCCAACGTCAGCGCCACCACCA
CCGCGCTGGGGCCCTACCGCAACCAGAACACCTCCAACGGGCTGTTGACCGACTGGGAAATGCGG
ATGCCCCGCCCACCGTACGAACCCATGTCCACCATCATGGACCTCGGCGAGGTCCCGGTGGACAT
GAAGTTGCTGCAGCTCCGCAACCCACGGGTGCACCCGCCGCTGGCGGTGTACACCAAGCACGCGG
ACTCGCAGGCGTACGCCAGCCACCACTCGCTGGGGTCGTTGGACA
Found at i:93236 original size:21 final size:21
Alignment explanation
Indices: 93210--93255 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 21
93200 GGTGAAGCGT
*
93210 TGGTGATAGT-TCTGGTGGTGG
1 TGGTGATAGTGT-TGATGGTGG
93231 TGGTGATAGTGTTGATGGTGG
1 TGGTGATAGTGTTGATGGTGG
93252 TGGT
1 TGGT
93256 AGGATGGTGG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 22 0.96
22 1 0.04
ACGTcount: A:0.11, C:0.02, G:0.48, T:0.39
Consensus pattern (21 bp):
TGGTGATAGTGTTGATGGTGG
Left flanking sequence: Indices 92710 -- 93209
ACCCATGTCCACCATCATGGACCTCGGCGAGGTCCCGGTGGACATGAAGTTGCTGCAGCTCCGCA
ACCCACGGGTGCACCCGCCGCTGGCGGTGTACACCAAGCACGCGGACTCGCAGGCGTACGCCAGC
CACCACTCGCTGGGGTCGTTGGACACCAGCACGCTGTCGCTGGGCGGCGGCAAGTCGCCGCCGGT
GGAGCCGCTGCTGATGGCGGCGTAGTTATGCATAGTAGTATTCAATTCAGGAGTTTTAGAAGAGT
AGGGGGTGTAGGGACGTAGAGTGGTGGTGGTGGTGGCGGTGAACTGTAAAGGGTGGTGATGAAGA
ACGGTGAGATGGTGAATAGTGCTGATGGTTATGGTGAACAGTGATGGTAAACAGGGTGGAAAATC
GCGTTGTGTAGGCTGGGGGGGCCGCAGGCGGCGCCCCCCCAGACCCCCCCAGCGCTTATTGCTGG
GTAGTGTGAGCGGTGGTGGGAGTGGTGAGAGTGTTGGTGAAGCGT
Right flanking sequence: Indices 93256 -- 93755
AGGATGGTGGTGGTTACGGTAGTGGCTACGGTAGCGATGGTAACGAGGCCTACATTTCACATCTT
CAGCTGTCAACTTGATTGAATTGCCGTGGTCCAGGAGGTACTATGGAATCAATGAAAAATTCTTT
TCGTACAATATGGCCTGGTATGAGTAGAATGGTGTTGTTTTCAAGGTATTGGGCCAACTGTAGTG
CAAGAACCAGCACGCATGTCTCGACTCGTGGTTAGAATCTTGATCCGCCGTCTGGCTAGAATCTT
TTGGCTTTGGTAGCGGGTTAGAATCTATTCTAATTGATATTTGGTAGTCTCGACTTTGGTTAGAA
TCTCAATCCGACAGCGTGTAGAATCTTTTCTAATTGACATTTGGTTAGTCTTGGCTCTTGGTTAG
AATCTTAATCCGACATTTGGCTAGAATCTTTTGGCTTTGGCGGTTAGTATCTTTTTTAATTGACA
TTTGGTTAGTCTTGACTTTGGTTAGAATCTTAATCCGACATTTCG
Found at i:93615 original size:65 final size:67
Alignment explanation
Indices: 93534--93660 Score: 195
Period size: 65 Copynumber: 1.9 Consensus size: 67
93524 GGTAGCGGGT
*
93534 TAGAATCTATTCTAATTGATATTTGG-TAGTCTCGACT-TTGGTTAGAATCTCAATCCGACAGCG
1 TAGAATCTATTCTAATTGACATTTGGTTAGTCTCGACTCTTGGTTAGAATCTCAATCCGACAGCG
93597 TG
66 TG
* * * *
93599 TAGAATCTTTTCTAATTGACATTTGGTTAGTCTTGGCTCTTGGTTAGAATCTTAATCCGACA
1 TAGAATCTATTCTAATTGACATTTGGTTAGTCTCGACTCTTGGTTAGAATCTCAATCCGACA
93661 TTTGGCTAGA
Statistics
Matches: 55, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
65 24 0.44
66 9 0.16
67 22 0.40
ACGTcount: A:0.25, C:0.17, G:0.19, T:0.39
Consensus pattern (67 bp):
TAGAATCTATTCTAATTGACATTTGGTTAGTCTCGACTCTTGGTTAGAATCTCAATCCGACAGCG
TG
Left flanking sequence: Indices 93034 -- 93533
AACGGTGAGATGGTGAATAGTGCTGATGGTTATGGTGAACAGTGATGGTAAACAGGGTGGAAAAT
CGCGTTGTGTAGGCTGGGGGGGCCGCAGGCGGCGCCCCCCCAGACCCCCCCAGCGCTTATTGCTG
GGTAGTGTGAGCGGTGGTGGGAGTGGTGAGAGTGTTGGTGAAGCGTTGGTGATAGTTCTGGTGGT
GGTGGTGATAGTGTTGATGGTGGTGGTAGGATGGTGGTGGTTACGGTAGTGGCTACGGTAGCGAT
GGTAACGAGGCCTACATTTCACATCTTCAGCTGTCAACTTGATTGAATTGCCGTGGTCCAGGAGG
TACTATGGAATCAATGAAAAATTCTTTTCGTACAATATGGCCTGGTATGAGTAGAATGGTGTTGT
TTTCAAGGTATTGGGCCAACTGTAGTGCAAGAACCAGCACGCATGTCTCGACTCGTGGTTAGAAT
CTTGATCCGCCGTCTGGCTAGAATCTTTTGGCTTTGGTAGCGGGT
Right flanking sequence: Indices 93661 -- 94160
TTTGGCTAGAATCTTTTGGCTTTGGCGGTTAGTATCTTTTTTAATTGACATTTGGTTAGTCTTGA
CTTTGGTTAGAATCTTAATCCGACATTTCGCTAGAATCTTTAGGCTTTGGCGGTTAGTATCTTTT
TTAATTGACATTTGGTTAGTCTTGACTTTGGTTAGAATCTTAATCCGACATTTCGCTAGAATCTT
TTGGCTTTGGCGATTAGTATCTTTTTTAATTGACATTTGGTTAGTCTTGACTTTGGTTAGAATCT
TAATCCGACATTTCGCTAGAATCTTTTGGCTTTGGTGGCGTGTAGAAACTTTTGTAATTGACATT
TGGTTAGTCTTGACTTTGGTTAGAATCTTAATCCGACATTTGGCTAGACTCTTTTGACTTTGGTG
GCGGGTTAGAATCTTTTCTAGTTGAAATTTGGTTAGTCTCGACTTTGGTTAGAATCTTAGTCCGC
ATTTGGCTAGAATCGTACAGTTAGATCAACGAATATTAATGATTT
Found at i:93765 original size:90 final size:90
Alignment explanation
Indices: 93603--94129 Score: 804
Period size: 90 Copynumber: 5.8 Consensus size: 90
93593 AGCGTGTAGA
* * *
93603 ATCTTTTCTAATTGACATTTGGTTAGTCTTGGCTCTTGGTTAGAATCTTAATCCGACATTTGGCT
1 ATCTTTTTTAATTGACATTTGGTTAGTCTTGACT-TTGGTTAGAATCTTAATCCGACATTTCGCT
93668 AGAATCTTTTGGCTTTGGCGGTTAGT
65 AGAATCTTTTGGCTTTGGCGGTTAGT
93694 ATCTTTTTTAATTGACATTTGGTTAGTCTTGACTTTGGTTAGAATCTTAATCCGACATTTCGCTA
1 ATCTTTTTTAATTGACATTTGGTTAGTCTTGACTTTGGTTAGAATCTTAATCCGACATTTCGCTA
*
93759 GAATCTTTAGGCTTTGGCGGTTAGT
66 GAATCTTTTGGCTTTGGCGGTTAGT
93784 ATCTTTTTTAATTGACATTTGGTTAGTCTTGACTTTGGTTAGAATCTTAATCCGACATTTCGCTA
1 ATCTTTTTTAATTGACATTTGGTTAGTCTTGACTTTGGTTAGAATCTTAATCCGACATTTCGCTA
*
93849 GAATCTTTTGGCTTTGGCGATTAGT
66 GAATCTTTTGGCTTTGGCGGTTAGT
93874 ATCTTTTTTAATTGACATTTGGTTAGTCTTGACTTTGGTTAGAATCTTAATCCGACATTTCGCTA
1 ATCTTTTTTAATTGACATTTGGTTAGTCTTGACTTTGGTTAGAATCTTAATCCGACATTTCGCTA
* *
93939 GAATCTTTTGGCTTTGGTGGCGTGTAGA
66 GAATCTTTTGGCTTTGG-CG-GT-TAGT
* * *
93967 AACTTTTGTAATTGACATTTGGTTAGTCTTGACTTTGGTTAGAATCTTAATCCGACATTTGGCTA
1 ATCTTTTTTAATTGACATTTGGTTAGTCTTGACTTTGGTTAGAATCTTAATCCGACATTTCGCTA
* * *
94032 GACTCTTTTGACTTTGGTGGCGGGTTAGA
66 GAATCTTTTGGC-TT--TGGC-GGTTAGT
* * * * * *
94061 ATCTTTTCTAGTTGAAATTTGGTTAGTCTCGACTTTGGTTAGAATCTTAGTCCG-CATTTGGCTA
1 ATCTTTTTTAATTGACATTTGGTTAGTCTTGACTTTGGTTAGAATCTTAATCCGACATTTCGCTA
94125 GAATC
66 GAATC
94130 GTACAGTTAG
Statistics
Matches: 407, Mismatches: 22, Indels: 12
0.92 0.05 0.03
Matches are distributed among these distances:
90 224 0.55
91 33 0.08
92 1 0.00
93 89 0.22
94 54 0.13
95 2 0.00
96 4 0.01
ACGTcount: A:0.21, C:0.15, G:0.21, T:0.44
Consensus pattern (90 bp):
ATCTTTTTTAATTGACATTTGGTTAGTCTTGACTTTGGTTAGAATCTTAATCCGACATTTCGCTA
GAATCTTTTGGCTTTGGCGGTTAGT
Left flanking sequence: Indices 93103 -- 93602
TTGTGTAGGCTGGGGGGGCCGCAGGCGGCGCCCCCCCAGACCCCCCCAGCGCTTATTGCTGGGTA
GTGTGAGCGGTGGTGGGAGTGGTGAGAGTGTTGGTGAAGCGTTGGTGATAGTTCTGGTGGTGGTG
GTGATAGTGTTGATGGTGGTGGTAGGATGGTGGTGGTTACGGTAGTGGCTACGGTAGCGATGGTA
ACGAGGCCTACATTTCACATCTTCAGCTGTCAACTTGATTGAATTGCCGTGGTCCAGGAGGTACT
ATGGAATCAATGAAAAATTCTTTTCGTACAATATGGCCTGGTATGAGTAGAATGGTGTTGTTTTC
AAGGTATTGGGCCAACTGTAGTGCAAGAACCAGCACGCATGTCTCGACTCGTGGTTAGAATCTTG
ATCCGCCGTCTGGCTAGAATCTTTTGGCTTTGGTAGCGGGTTAGAATCTATTCTAATTGATATTT
GGTAGTCTCGACTTTGGTTAGAATCTCAATCCGACAGCGTGTAGA
Right flanking sequence: Indices 94130 -- 94629
GTACAGTTAGATCAACGAATATTAATGATTTGGATTCGAATTGTGATGATTTGCATTTCATGAGT
TTAAAATGATTATAAGTACATAGCCTTAAACATGGCGTAAATAGTAGGTTGTTGCTTTTAGTGGT
GTTGATTTTAAGTAGTGGTGATGGTAGTTAAAGGAGGTTGAATGAATTGTAATAGGCTTGATGGT
CGAGATACCAGGTAGTGAAGGTAGGTATAGAATCGTTGAGGGGCCAAGAGTGATGACAATGTGGT
GTTATATTGCGCTGATAGTGGTGGTGGTGACGCTGACACTCCATTGTCTGTCGGTTAATTGTCTG
GTGATGGATTGATGAATTGATGAATTGATTATCAAACACGTCTTGTGTCTACGGTGATCCAACAC
CTACGTTTTGCCGCATCCAACCAAACCATCCTCATCCTACGATCTTGTGTCCTCAGCCGTGCCTC
GCCAAAAATAGCCAGCGAGGCGAGCCATGACGCAAGCGGGCCGCC
Found at i:94837 original size:11 final size:11
Alignment explanation
Indices: 94821--94893 Score: 101
Period size: 11 Copynumber: 6.6 Consensus size: 11
94811 CTTTCTCCCC
**
94821 TTCCTCCTACG
1 TTCCTCCTATT
*
94832 TTCCTCCTATC
1 TTCCTCCTATT
*
94843 TTCCTCCTATA
1 TTCCTCCTATT
94854 TTCCTCCTATT
1 TTCCTCCTATT
94865 TTCCTCCTATT
1 TTCCTCCTATT
94876 TTCCTCCTATT
1 TTCCTCCTATT
*
94887 TTACTCC
1 TTCCTCC
94894 CTCTTCTCTC
Statistics
Matches: 57, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
11 57 1.00
ACGTcount: A:0.11, C:0.40, G:0.01, T:0.48
Consensus pattern (11 bp):
TTCCTCCTATT
Left flanking sequence: Indices 94321 -- 94820
TGGTCGAGATACCAGGTAGTGAAGGTAGGTATAGAATCGTTGAGGGGCCAAGAGTGATGACAATG
TGGTGTTATATTGCGCTGATAGTGGTGGTGGTGACGCTGACACTCCATTGTCTGTCGGTTAATTG
TCTGGTGATGGATTGATGAATTGATGAATTGATTATCAAACACGTCTTGTGTCTACGGTGATCCA
ACACCTACGTTTTGCCGCATCCAACCAAACCATCCTCATCCTACGATCTTGTGTCCTCAGCCGTG
CCTCGCCAAAAATAGCCAGCGAGGCGAGCCATGACGCAAGCGGGCCGCCCGAGCGAATTGTGCCA
CTTCCCCTTGCGTGAAGCCTCGGCAATGCTCGGAGCACGCCCACACTGGCGGGGTATAGTTACCA
TTGGCAACATCACACCACGGCGCAAAACGGACTTAGTACGAACCACTCTATTCTCGTACAAGTCT
ACCAAACGAATGCTTTTCTTTCGTACGTCACTCTACTTTCTCCCC
Right flanking sequence: Indices 94894 -- 95393
CTCTTCTCTCCTTGGTTTCTCCCTCTTCCCTCCTTCTTCCCTCTTTCTTCCCTCCTTCTTCGTCC
CTCTTCCTCTCTCCCCCTCCTTCCCTCCTCCCTCTTCCCACTTCTCGCATAATCTTGCATCATTC
TCATCACAATGGGGGACCCTGAGCTGGCCCAATCGTTGGGTTTCCCCTTCAATCTCCCCGTGGAG
GTGCTTCTCCGCGTGTTTGCCCAGTTGCCCGACGACATCGACGGGTTCATTGTCGCCCTCCTCCA
CTCCCGGTCCCATCGCCGCTTCCTCCAGGTGCTAGCCGAGTGCCACGGGCGGTTGGACGTCAACG
AGGCGGTGCTCGCCGCGTTTGGCGGCCTCTTCAAGCACCCCCACAACCCGTGGTGGCGGTTGCCC
ATCCACTCGCCGTGGTTCATGCCCCTGGCCCTCGCCTTTGGAGGGGAGGGCGGCCTCGTGTTGCT
CGACGGGTCGTGCCTCAAACGGGGTCCCGGGCTGGAAAAGTGCCT
Found at i:94904 original size:22 final size:21
Alignment explanation
Indices: 94857--94927 Score: 56
Period size: 22 Copynumber: 3.2 Consensus size: 21
94847 TCCTATATTC
* *
94857 CTCCTATTTTC-CTCCTATTTT
1 CTCCTATTTTCTC-CCTCTTCT
94878 CCTCCTATTTTACTCCCTCTTCT
1 -CTCCTATTTT-CTCCCTCTTCT
*
94901 CTCCT-TGGTTTCTCCCTCTTCC
1 CTCCTAT--TTTCTCCCTCTTCT
94923 CTCCT
1 CTCCT
94928 TCTTCCCTCT
Statistics
Matches: 42, Mismatches: 3, Indels: 8
0.79 0.06 0.15
Matches are distributed among these distances:
21 1 0.02
22 30 0.71
23 10 0.24
24 1 0.02
ACGTcount: A:0.06, C:0.42, G:0.03, T:0.49
Consensus pattern (21 bp):
CTCCTATTTTCTCCCTCTTCT
Left flanking sequence: Indices 94357 -- 94856
TCGTTGAGGGGCCAAGAGTGATGACAATGTGGTGTTATATTGCGCTGATAGTGGTGGTGGTGACG
CTGACACTCCATTGTCTGTCGGTTAATTGTCTGGTGATGGATTGATGAATTGATGAATTGATTAT
CAAACACGTCTTGTGTCTACGGTGATCCAACACCTACGTTTTGCCGCATCCAACCAAACCATCCT
CATCCTACGATCTTGTGTCCTCAGCCGTGCCTCGCCAAAAATAGCCAGCGAGGCGAGCCATGACG
CAAGCGGGCCGCCCGAGCGAATTGTGCCACTTCCCCTTGCGTGAAGCCTCGGCAATGCTCGGAGC
ACGCCCACACTGGCGGGGTATAGTTACCATTGGCAACATCACACCACGGCGCAAAACGGACTTAG
TACGAACCACTCTATTCTCGTACAAGTCTACCAAACGAATGCTTTTCTTTCGTACGTCACTCTAC
TTTCTCCCCTTCCTCCTACGTTCCTCCTATCTTCCTCCTATATTC
Right flanking sequence: Indices 94928 -- 95427
TCTTCCCTCTTTCTTCCCTCCTTCTTCGTCCCTCTTCCTCTCTCCCCCTCCTTCCCTCCTCCCTC
TTCCCACTTCTCGCATAATCTTGCATCATTCTCATCACAATGGGGGACCCTGAGCTGGCCCAATC
GTTGGGTTTCCCCTTCAATCTCCCCGTGGAGGTGCTTCTCCGCGTGTTTGCCCAGTTGCCCGACG
ACATCGACGGGTTCATTGTCGCCCTCCTCCACTCCCGGTCCCATCGCCGCTTCCTCCAGGTGCTA
GCCGAGTGCCACGGGCGGTTGGACGTCAACGAGGCGGTGCTCGCCGCGTTTGGCGGCCTCTTCAA
GCACCCCCACAACCCGTGGTGGCGGTTGCCCATCCACTCGCCGTGGTTCATGCCCCTGGCCCTCG
CCTTTGGAGGGGAGGGCGGCCTCGTGTTGCTCGACGGGTCGTGCCTCAAACGGGGTCCCGGGCTG
GAAAAGTGCCTGTTGACACTCTCCACCGTGGCTCTTGTCAACGTC
Found at i:94926 original size:11 final size:11
Alignment explanation
Indices: 94912--94954 Score: 68
Period size: 11 Copynumber: 3.9 Consensus size: 11
94902 TCCTTGGTTT
*
94912 CTCCCTCTTCC
1 CTCCTTCTTCC
94923 CTCCTTCTTCC
1 CTCCTTCTTCC
*
94934 CTCTTTCTTCC
1 CTCCTTCTTCC
94945 CTCCTTCTTC
1 CTCCTTCTTC
94955 GTCCCTCTTC
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
11 29 1.00
ACGTcount: A:0.00, C:0.53, G:0.00, T:0.47
Consensus pattern (11 bp):
CTCCTTCTTCC
Left flanking sequence: Indices 94412 -- 94911
GGTGGTGACGCTGACACTCCATTGTCTGTCGGTTAATTGTCTGGTGATGGATTGATGAATTGATG
AATTGATTATCAAACACGTCTTGTGTCTACGGTGATCCAACACCTACGTTTTGCCGCATCCAACC
AAACCATCCTCATCCTACGATCTTGTGTCCTCAGCCGTGCCTCGCCAAAAATAGCCAGCGAGGCG
AGCCATGACGCAAGCGGGCCGCCCGAGCGAATTGTGCCACTTCCCCTTGCGTGAAGCCTCGGCAA
TGCTCGGAGCACGCCCACACTGGCGGGGTATAGTTACCATTGGCAACATCACACCACGGCGCAAA
ACGGACTTAGTACGAACCACTCTATTCTCGTACAAGTCTACCAAACGAATGCTTTTCTTTCGTAC
GTCACTCTACTTTCTCCCCTTCCTCCTACGTTCCTCCTATCTTCCTCCTATATTCCTCCTATTTT
CCTCCTATTTTCCTCCTATTTTACTCCCTCTTCTCTCCTTGGTTT
Right flanking sequence: Indices 94955 -- 95454
GTCCCTCTTCCTCTCTCCCCCTCCTTCCCTCCTCCCTCTTCCCACTTCTCGCATAATCTTGCATC
ATTCTCATCACAATGGGGGACCCTGAGCTGGCCCAATCGTTGGGTTTCCCCTTCAATCTCCCCGT
GGAGGTGCTTCTCCGCGTGTTTGCCCAGTTGCCCGACGACATCGACGGGTTCATTGTCGCCCTCC
TCCACTCCCGGTCCCATCGCCGCTTCCTCCAGGTGCTAGCCGAGTGCCACGGGCGGTTGGACGTC
AACGAGGCGGTGCTCGCCGCGTTTGGCGGCCTCTTCAAGCACCCCCACAACCCGTGGTGGCGGTT
GCCCATCCACTCGCCGTGGTTCATGCCCCTGGCCCTCGCCTTTGGAGGGGAGGGCGGCCTCGTGT
TGCTCGACGGGTCGTGCCTCAAACGGGGTCCCGGGCTGGAAAAGTGCCTGTTGACACTCTCCACC
GTGGCTCTTGTCAACGTCACCACCATTGCTGTGGACCAGCTCAAC
Found at i:94997 original size:14 final size:15
Alignment explanation
Indices: 94956--94997 Score: 50
Period size: 16 Copynumber: 2.7 Consensus size: 15
94946 TCCTTCTTCG
94956 TCCCTCTTCCTCTCTC
1 TCCCTCTTCC-CTCTC
*
94972 CCCCTCCTTCCCTC-C
1 TCCCT-CTTCCCTCTC
94987 TCCCTCTTCCC
1 TCCCTCTTCCC
94998 ACTTCTCGCA
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
14 6 0.26
15 5 0.22
16 7 0.30
17 5 0.22
ACGTcount: A:0.00, C:0.64, G:0.00, T:0.36
Consensus pattern (15 bp):
TCCCTCTTCCCTCTC
Left flanking sequence: Indices 94456 -- 94955
TGATGGATTGATGAATTGATGAATTGATTATCAAACACGTCTTGTGTCTACGGTGATCCAACACC
TACGTTTTGCCGCATCCAACCAAACCATCCTCATCCTACGATCTTGTGTCCTCAGCCGTGCCTCG
CCAAAAATAGCCAGCGAGGCGAGCCATGACGCAAGCGGGCCGCCCGAGCGAATTGTGCCACTTCC
CCTTGCGTGAAGCCTCGGCAATGCTCGGAGCACGCCCACACTGGCGGGGTATAGTTACCATTGGC
AACATCACACCACGGCGCAAAACGGACTTAGTACGAACCACTCTATTCTCGTACAAGTCTACCAA
ACGAATGCTTTTCTTTCGTACGTCACTCTACTTTCTCCCCTTCCTCCTACGTTCCTCCTATCTTC
CTCCTATATTCCTCCTATTTTCCTCCTATTTTCCTCCTATTTTACTCCCTCTTCTCTCCTTGGTT
TCTCCCTCTTCCCTCCTTCTTCCCTCTTTCTTCCCTCCTTCTTCG
Right flanking sequence: Indices 94998 -- 95497
ACTTCTCGCATAATCTTGCATCATTCTCATCACAATGGGGGACCCTGAGCTGGCCCAATCGTTGG
GTTTCCCCTTCAATCTCCCCGTGGAGGTGCTTCTCCGCGTGTTTGCCCAGTTGCCCGACGACATC
GACGGGTTCATTGTCGCCCTCCTCCACTCCCGGTCCCATCGCCGCTTCCTCCAGGTGCTAGCCGA
GTGCCACGGGCGGTTGGACGTCAACGAGGCGGTGCTCGCCGCGTTTGGCGGCCTCTTCAAGCACC
CCCACAACCCGTGGTGGCGGTTGCCCATCCACTCGCCGTGGTTCATGCCCCTGGCCCTCGCCTTT
GGAGGGGAGGGCGGCCTCGTGTTGCTCGACGGGTCGTGCCTCAAACGGGGTCCCGGGCTGGAAAA
GTGCCTGTTGACACTCTCCACCGTGGCTCTTGTCAACGTCACCACCATTGCTGTGGACCAGCTCA
ACATGGCCTACTCCGACGTCGACTGTGTGGGCCGCGAGGGCCGCA
Found at i:96273 original size:16 final size:15
Alignment explanation
Indices: 96235--96274 Score: 62
Period size: 15 Copynumber: 2.6 Consensus size: 15
96225 TTTTGCATCT
96235 TGTTTGCAGCCAATG
1 TGTTTGCAGCCAATG
*
96250 TGTTTGCAGCCAGTG
1 TGTTTGCAGCCAATG
96265 TGTTTTGCAG
1 TG-TTTGCAG
96275 TCAAGTGGTC
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
15 16 0.70
16 7 0.30
ACGTcount: A:0.15, C:0.17, G:0.30, T:0.38
Consensus pattern (15 bp):
TGTTTGCAGCCAATG
Left flanking sequence: Indices 95735 -- 96234
ACCTCGAAATGCTCTGGGTGAACGCCCGGTGGTGGGGCAACCTCGAGCTTCCCCCGGCACTTGTG
GAGTTGAACATCGAGGACGTCGACTTCGACAACCTGTTCAGCCGCAACAACGGCGGGCTCGAGCA
CTCGGAGCTGCTCCGGGCGCTTTCTTTTACTCGGTGTGCGTTCTCGGTGTTTGACAACACGTTGA
TTGGGATGCCCCCGAACCTCGAGGAGCTCCGGTTGAACGACTGCTCGGGCAACTTTTCCCAGGCG
GGCACGGTGGCCAAGCAGTGTCGGATCTTGGTGGACGGCGAGGAGTGGGACCGCAACCAGCCGCA
GCAGCCGGTGGACGAGCCCGAGGACGAGGGCGACCGTCCGCTCAACGAGCACATCATGGAGTTTA
TGCCGTCGATCGATACCTCGGAGTTTGATAGAGCAGCGTAGGGTTAGCATACTGTAAATATAACA
TGGTTATGGTTAATTGGGTTTCGCAGCCTGGTTTGTTTTGCATCT
Right flanking sequence: Indices 96275 -- 96774
TCAAGTGGTCTGTTTTGCTGCCTGTTTTGCAGCCAAGTGATTTGTTTTGCAGTCAAGTGGTTTGT
TTTGCAGCTTGGTTTGTTTTCAGCCTGATTCGTTTTCAGCCTCTTTTGTTTTGCAGCCTTTTTTG
CAGCCAAGTGGATGGTATGCGATTGTAGAGGATTGGTTGCAATACGTAAGTTTCTGGAGAACGGA
CTGGAGAACGGGCTGAGATGGCTGTGTAACGAAAGAAGCGTTCAAACGAGTAAGATGAGTACATT
TGTGAGAGTTTCCTAGTCATTTGCCAGACTCAGTGTGGTAGTCTGTCAGATAGTGGGTAAGTCTT
CATCCTCACCACCACGAAAACATCAAACTACCTCACACTTTCAACACAAAAACGACCCGCCAGTA
GTCCACACCAGTAGTCCACACCAGTAGTCCACACCAGTTCTTACTTGTATCCCACCGGTCTCATT
TTCATATTGCGTTCCTCAAACTTCCTACTCTGTCTCCACCACATC
Found at i:96322 original size:20 final size:20
Alignment explanation
Indices: 96297--96347 Score: 84
Period size: 20 Copynumber: 2.5 Consensus size: 20
96287 TTTTGCTGCC
96297 TGTTTTGCAGCCAAGTGATT
1 TGTTTTGCAGCCAAGTGATT
* *
96317 TGTTTTGCAGTCAAGTGGTT
1 TGTTTTGCAGCCAAGTGATT
96337 TGTTTTGCAGC
1 TGTTTTGCAGC
96348 TTGGTTTGTT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.16, C:0.14, G:0.27, T:0.43
Consensus pattern (20 bp):
TGTTTTGCAGCCAAGTGATT
Left flanking sequence: Indices 95797 -- 96296
GTGGAGTTGAACATCGAGGACGTCGACTTCGACAACCTGTTCAGCCGCAACAACGGCGGGCTCGA
GCACTCGGAGCTGCTCCGGGCGCTTTCTTTTACTCGGTGTGCGTTCTCGGTGTTTGACAACACGT
TGATTGGGATGCCCCCGAACCTCGAGGAGCTCCGGTTGAACGACTGCTCGGGCAACTTTTCCCAG
GCGGGCACGGTGGCCAAGCAGTGTCGGATCTTGGTGGACGGCGAGGAGTGGGACCGCAACCAGCC
GCAGCAGCCGGTGGACGAGCCCGAGGACGAGGGCGACCGTCCGCTCAACGAGCACATCATGGAGT
TTATGCCGTCGATCGATACCTCGGAGTTTGATAGAGCAGCGTAGGGTTAGCATACTGTAAATATA
ACATGGTTATGGTTAATTGGGTTTCGCAGCCTGGTTTGTTTTGCATCTTGTTTGCAGCCAATGTG
TTTGCAGCCAGTGTGTTTTGCAGTCAAGTGGTCTGTTTTGCTGCC
Right flanking sequence: Indices 96348 -- 96847
TTGGTTTGTTTTCAGCCTGATTCGTTTTCAGCCTCTTTTGTTTTGCAGCCTTTTTTGCAGCCAAG
TGGATGGTATGCGATTGTAGAGGATTGGTTGCAATACGTAAGTTTCTGGAGAACGGACTGGAGAA
CGGGCTGAGATGGCTGTGTAACGAAAGAAGCGTTCAAACGAGTAAGATGAGTACATTTGTGAGAG
TTTCCTAGTCATTTGCCAGACTCAGTGTGGTAGTCTGTCAGATAGTGGGTAAGTCTTCATCCTCA
CCACCACGAAAACATCAAACTACCTCACACTTTCAACACAAAAACGACCCGCCAGTAGTCCACAC
CAGTAGTCCACACCAGTAGTCCACACCAGTTCTTACTTGTATCCCACCGGTCTCATTTTCATATT
GCGTTCCTCAAACTTCCTACTCTGTCTCCACCACATCATCTCCCATCCCACATTCGCGCGCACCA
ATGAACGGGCCCAACCAAGACGTCATCTTCTACCGCGACGGCTCC
Found at i:96354 original size:17 final size:16
Alignment explanation
Indices: 96332--96398 Score: 71
Period size: 16 Copynumber: 4.1 Consensus size: 16
96322 TGCAGTCAAG
*
96332 TGGTTTGTTTTGCAGCT
1 TGGTTTGTTTT-CAGCC
96349 TGGTTTGTTTTCAGCC
1 TGGTTTGTTTTCAGCC
* *
96365 TGATTCGTTTTCAGCC
1 TGGTTTGTTTTCAGCC
**
96381 TCTTTTGTTTTGCAGCC
1 TGGTTTGTTTT-CAGCC
96398 T
1 T
96399 TTTTTGCAGC
Statistics
Matches: 43, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
16 26 0.60
17 17 0.40
ACGTcount: A:0.07, C:0.19, G:0.22, T:0.51
Consensus pattern (16 bp):
TGGTTTGTTTTCAGCC
Left flanking sequence: Indices 95832 -- 96331
CCTGTTCAGCCGCAACAACGGCGGGCTCGAGCACTCGGAGCTGCTCCGGGCGCTTTCTTTTACTC
GGTGTGCGTTCTCGGTGTTTGACAACACGTTGATTGGGATGCCCCCGAACCTCGAGGAGCTCCGG
TTGAACGACTGCTCGGGCAACTTTTCCCAGGCGGGCACGGTGGCCAAGCAGTGTCGGATCTTGGT
GGACGGCGAGGAGTGGGACCGCAACCAGCCGCAGCAGCCGGTGGACGAGCCCGAGGACGAGGGCG
ACCGTCCGCTCAACGAGCACATCATGGAGTTTATGCCGTCGATCGATACCTCGGAGTTTGATAGA
GCAGCGTAGGGTTAGCATACTGTAAATATAACATGGTTATGGTTAATTGGGTTTCGCAGCCTGGT
TTGTTTTGCATCTTGTTTGCAGCCAATGTGTTTGCAGCCAGTGTGTTTTGCAGTCAAGTGGTCTG
TTTTGCTGCCTGTTTTGCAGCCAAGTGATTTGTTTTGCAGTCAAG
Right flanking sequence: Indices 96399 -- 96898
TTTTTGCAGCCAAGTGGATGGTATGCGATTGTAGAGGATTGGTTGCAATACGTAAGTTTCTGGAG
AACGGACTGGAGAACGGGCTGAGATGGCTGTGTAACGAAAGAAGCGTTCAAACGAGTAAGATGAG
TACATTTGTGAGAGTTTCCTAGTCATTTGCCAGACTCAGTGTGGTAGTCTGTCAGATAGTGGGTA
AGTCTTCATCCTCACCACCACGAAAACATCAAACTACCTCACACTTTCAACACAAAAACGACCCG
CCAGTAGTCCACACCAGTAGTCCACACCAGTAGTCCACACCAGTTCTTACTTGTATCCCACCGGT
CTCATTTTCATATTGCGTTCCTCAAACTTCCTACTCTGTCTCCACCACATCATCTCCCATCCCAC
ATTCGCGCGCACCAATGAACGGGCCCAACCAAGACGTCATCTTCTACCGCGACGGCTCCATCATC
AATGACACGGTGCTCGAGCGCGGTCGCTACCTCCTGATGGTGCTG
Found at i:96403 original size:17 final size:16
Alignment explanation
Indices: 96352--96404 Score: 61
Period size: 16 Copynumber: 3.2 Consensus size: 16
96342 TGCAGCTTGG
**
96352 TTTGTTTTCAGCCTGA
1 TTTGTTTTCAGCCTTT
* *
96368 TTCGTTTTCAGCCTCT
1 TTTGTTTTCAGCCTTT
96384 TTTGTTTTGCAGCCTTT
1 TTTGTTTT-CAGCCTTT
96401 TTTG
1 TTTG
96405 CAGCCAAGTG
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
16 20 0.65
17 11 0.35
ACGTcount: A:0.08, C:0.21, G:0.17, T:0.55
Consensus pattern (16 bp):
TTTGTTTTCAGCCTTT
Left flanking sequence: Indices 95852 -- 96351
GCGGGCTCGAGCACTCGGAGCTGCTCCGGGCGCTTTCTTTTACTCGGTGTGCGTTCTCGGTGTTT
GACAACACGTTGATTGGGATGCCCCCGAACCTCGAGGAGCTCCGGTTGAACGACTGCTCGGGCAA
CTTTTCCCAGGCGGGCACGGTGGCCAAGCAGTGTCGGATCTTGGTGGACGGCGAGGAGTGGGACC
GCAACCAGCCGCAGCAGCCGGTGGACGAGCCCGAGGACGAGGGCGACCGTCCGCTCAACGAGCAC
ATCATGGAGTTTATGCCGTCGATCGATACCTCGGAGTTTGATAGAGCAGCGTAGGGTTAGCATAC
TGTAAATATAACATGGTTATGGTTAATTGGGTTTCGCAGCCTGGTTTGTTTTGCATCTTGTTTGC
AGCCAATGTGTTTGCAGCCAGTGTGTTTTGCAGTCAAGTGGTCTGTTTTGCTGCCTGTTTTGCAG
CCAAGTGATTTGTTTTGCAGTCAAGTGGTTTGTTTTGCAGCTTGG
Right flanking sequence: Indices 96405 -- 96904
CAGCCAAGTGGATGGTATGCGATTGTAGAGGATTGGTTGCAATACGTAAGTTTCTGGAGAACGGA
CTGGAGAACGGGCTGAGATGGCTGTGTAACGAAAGAAGCGTTCAAACGAGTAAGATGAGTACATT
TGTGAGAGTTTCCTAGTCATTTGCCAGACTCAGTGTGGTAGTCTGTCAGATAGTGGGTAAGTCTT
CATCCTCACCACCACGAAAACATCAAACTACCTCACACTTTCAACACAAAAACGACCCGCCAGTA
GTCCACACCAGTAGTCCACACCAGTAGTCCACACCAGTTCTTACTTGTATCCCACCGGTCTCATT
TTCATATTGCGTTCCTCAAACTTCCTACTCTGTCTCCACCACATCATCTCCCATCCCACATTCGC
GCGCACCAATGAACGGGCCCAACCAAGACGTCATCTTCTACCGCGACGGCTCCATCATCAATGAC
ACGGTGCTCGAGCGCGGTCGCTACCTCCTGATGGTGCTGTACACC
Done.