Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: scaffold48
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 277881
ACGTcount: A:0.22, C:0.28, G:0.28, T:0.22
Warning! 1 characters in sequence are not A, C, G, or T
File 1 of 3
Found at i:348 original size:22 final size:22
Alignment explanation
Indices: 306--390 Score: 97
Period size: 22 Copynumber: 4.0 Consensus size: 22
296 TCGCTCCACA
306 AACCAACTCTA-T-TCTAATCC
1 AACCAACTCTAGTCTCTAATCC
*
326 AACCAACTCTAGTCTCTATTCC
1 AACCAACTCTAGTCTCTAATCC
* *
348 AACGAAAC-CTAGTCTCTACTCC
1 AAC-CAACTCTAGTCTCTAATCC
*
370 AACCAACTCT-CTCTCTAATCC
1 AACCAACTCTAGTCTCTAATCC
391 CTTTATTAAT
Statistics
Matches: 55, Mismatches: 6, Indels: 7
0.81 0.09 0.10
Matches are distributed among these distances:
20 11 0.20
21 13 0.24
22 28 0.51
23 3 0.05
ACGTcount: A:0.31, C:0.38, G:0.04, T:0.28
Consensus pattern (22 bp):
AACCAACTCTAGTCTCTAATCC
Left flanking sequence: Indices 1 -- 305
CGCAGGGCGAGAGTGCAAAACGAGACCTGTGGTATGGCAGGGAGGCAATAGCTTCGTGGAGATAG
GTACTCTTACAAGGTATAGGGACTCTAACCTGGTATACTTATTCACTAACCTTTTAAGAATCGCC
AACTCCAGTACCAAATACCCTACCGCAACCAAGTCGTGCCGCTACCACTTACCCTGGAAAGTAGT
GCACCGCCCAAAAGCACCCGTCTCGGATCATAGTTTTTCCCATAGATGTTCCGCGTGGACGCTGC
GTCTACCAACATCTCAATGCACACATCTTCACCTCTCGCTCCACA
Right flanking sequence: Indices 391 -- 890
CTTTATTAATGCGTAACTAAACCCCCGTGGTACTGCGGCTTCTCGTTGGGGTCAATCTTAAACAC
CTTGTCGGGGTTCATGATCCGCAACGGGTCAAGCGCCATCTTGACAGCACGCATCACGTCAATCA
GGTTCTCGCCCACCTCCTCCACCAAGTAGTCGCGCTTCCCGAACCCTACACCGTGCTCACCCGTG
CAAGTGCCCTCGTAGGCCAAGGCTCGTCTCACCATGTTGTTGACCACGGTTTCGGCCTGATCGCG
CTGGTCGGGACGGTACAAAATAAACAGATGGGCGTTACCGTCGCCAATGTGCGCCACAAGCGTGT
TGATGAGCCCAGCGTTGTCGATATCGGCCTTGGTCTCGGACAAAAACTGCGGAAGACGCAGAATG
GGCACCGCAGCGTCGGTGGTCCACAACTGGATGTCGGGGTCCTTCGCCTGGCCCTGGTTGATCGT
CGACCAGAGCGCCACCTTCCGCGCCAGCCACAACTCGGTCTTCTC
Found at i:4238 original size:12 final size:12
Alignment explanation
Indices: 4221--4255 Score: 70
Period size: 12 Copynumber: 2.9 Consensus size: 12
4211 TAGGAGTTGG
4221 GTGGGGTGTGGA
1 GTGGGGTGTGGA
4233 GTGGGGTGTGGA
1 GTGGGGTGTGGA
4245 GTGGGGTGTGG
1 GTGGGGTGTGG
4256 CTCTACTGGC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.06, C:0.00, G:0.69, T:0.26
Consensus pattern (12 bp):
GTGGGGTGTGGA
Left flanking sequence: Indices 3721 -- 4220
TGTGGACTGCGGGCGGGCCAACTTTGCGCTGATCCAGCAGGTGATTAGTCACTCGCGCAATGCCC
ACCTGAGGGAGTACGCGTCTCAGGACGAGGCGGCTCTCCGGTGCGGGAAGGTGATCGTCGAGGTG
AAACAGGACTCCGAGGGCGAGGCGCTGATCCAGGCGCTCATTGCCAAGGGGTTGAACCCGAACCA
CCACTTGAATCTCACGCTGTTCTTGCCCGAGGGGGACGAGCCCGCTCCCAAACGGGCGCGTCCGG
CTCCCAGACAGAGCTCGCTCCTTAAAAAGATGGCCAAGGAGCAGCACATCACCAAGGAGCAGTTC
CAGCAGCTCATCAGCGACGCCAAGGCCCCGGTGGGCGACGCGCACTTGTTTGACGGCGAGGTGGA
CGCGTCGGACAGCGAGGAGCCGCGCGGGTCGACGCCCGAATTGGAACTGGTTCCGGTGTCGAGGG
GCCAGAGGAAGTCGCGTCTGGGAATGACGCTTAAGTAGGAGTTGG
Right flanking sequence: Indices 4256 -- 4755
CTCTACTGGCTAGAGCCGCAGTAGTCAACCAGGCTAATGTGACTGATTCGGAGCATGGCTCACAG
GTATAGGTATATAGGGTAGCTTATTCAGTCAAGTAATGAACAGAGCTTGTTTAGGAGAAGTGGAG
TCAAGTGTGATGAAAGTCGTAGAGTGTGGTTTGACGAAAGTCGCAGAATATGGGTTGACGAAAGT
CGTAGAGTATGGAGTGATGGAGGTTCGTAGTGAGTTCTTCATCCCAGCAATGCCATCAACAAATC
AGTTTAACCGCTAGATAGTCCACTAATACAATAAAAAGACGATGAAAACACAACTGAATTAAAGT
TCTGAACTCTCAATTGTGGACCATTTGAATTCAAAAATAACATGTTTGTAGCTAAAATTCAACTT
TTGAATGAGGCACTGTTATCAATTAACCTTTGAGGAATAGATTCAATCTGATTTCCCCAGTTCGA
TACGATCAACCTGGCTATTGTAAAACTGTTACACTCTTAGATATA
Found at i:4424 original size:24 final size:24
Alignment explanation
Indices: 4397--4462 Score: 96
Period size: 24 Copynumber: 2.8 Consensus size: 24
4387 CAAGTGTGAT
* *
4397 GAAAGTCGTAGAGTGTGGTTTGAC
1 GAAAGTCGTAGAGTATGGGTTGAC
* *
4421 GAAAGTCGCAGAATATGGGTTGAC
1 GAAAGTCGTAGAGTATGGGTTGAC
4445 GAAAGTCGTAGAGTATGG
1 GAAAGTCGTAGAGTATGG
4463 AGTGATGGAG
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 36 1.00
ACGTcount: A:0.30, C:0.09, G:0.36, T:0.24
Consensus pattern (24 bp):
GAAAGTCGTAGAGTATGGGTTGAC
Left flanking sequence: Indices 3897 -- 4396
AGGGGTTGAACCCGAACCACCACTTGAATCTCACGCTGTTCTTGCCCGAGGGGGACGAGCCCGCT
CCCAAACGGGCGCGTCCGGCTCCCAGACAGAGCTCGCTCCTTAAAAAGATGGCCAAGGAGCAGCA
CATCACCAAGGAGCAGTTCCAGCAGCTCATCAGCGACGCCAAGGCCCCGGTGGGCGACGCGCACT
TGTTTGACGGCGAGGTGGACGCGTCGGACAGCGAGGAGCCGCGCGGGTCGACGCCCGAATTGGAA
CTGGTTCCGGTGTCGAGGGGCCAGAGGAAGTCGCGTCTGGGAATGACGCTTAAGTAGGAGTTGGG
TGGGGTGTGGAGTGGGGTGTGGAGTGGGGTGTGGCTCTACTGGCTAGAGCCGCAGTAGTCAACCA
GGCTAATGTGACTGATTCGGAGCATGGCTCACAGGTATAGGTATATAGGGTAGCTTATTCAGTCA
AGTAATGAACAGAGCTTGTTTAGGAGAAGTGGAGTCAAGTGTGAT
Right flanking sequence: Indices 4463 -- 4962
AGTGATGGAGGTTCGTAGTGAGTTCTTCATCCCAGCAATGCCATCAACAAATCAGTTTAACCGCT
AGATAGTCCACTAATACAATAAAAAGACGATGAAAACACAACTGAATTAAAGTTCTGAACTCTCA
ATTGTGGACCATTTGAATTCAAAAATAACATGTTTGTAGCTAAAATTCAACTTTTGAATGAGGCA
CTGTTATCAATTAACCTTTGAGGAATAGATTCAATCTGATTTCCCCAGTTCGATACGATCAACCT
GGCTATTGTAAAACTGTTACACTCTTAGATATACAAAACTCCCATTCGAACACTCTCTCTCACAC
CCCATTTATCACTCATACCACCCACTTCGCACTGGGTCACCAATACGACAAAACCGAAACACCAC
CACCCACACACCACCACCCACAGCACCCACAGCACCAACACCACAGCACCACACACCACCACCCA
CACCCTCTACTACAACCCATTAACCACCCTTCCTACCACTTCCCT
Found at i:4865 original size:14 final size:14
Alignment explanation
Indices: 4846--4920 Score: 75
Period size: 14 Copynumber: 5.1 Consensus size: 14
4836 CAAAACCGAA
4846 ACACCACCACCCAC
1 ACACCACCACCCAC
4860 ACACCACCACCCAC
1 ACACCACCACCCAC
4874 AGCACC-CACAGCACCA-
1 A-CACCAC-CA-C-CCAC
4890 ACACCA-CAGCACCAC
1 ACACCACCA-C-CCAC
4905 ACACCACCACCCAC
1 ACACCACCACCCAC
4919 AC
1 AC
4921 CCTCTACTAC
Statistics
Matches: 54, Mismatches: 0, Indels: 14
0.79 0.00 0.21
Matches are distributed among these distances:
14 30 0.56
15 17 0.31
16 4 0.07
17 3 0.06
ACGTcount: A:0.37, C:0.59, G:0.04, T:0.00
Consensus pattern (14 bp):
ACACCACCACCCAC
Left flanking sequence: Indices 4346 -- 4845
CAGTCAAGTAATGAACAGAGCTTGTTTAGGAGAAGTGGAGTCAAGTGTGATGAAAGTCGTAGAGT
GTGGTTTGACGAAAGTCGCAGAATATGGGTTGACGAAAGTCGTAGAGTATGGAGTGATGGAGGTT
CGTAGTGAGTTCTTCATCCCAGCAATGCCATCAACAAATCAGTTTAACCGCTAGATAGTCCACTA
ATACAATAAAAAGACGATGAAAACACAACTGAATTAAAGTTCTGAACTCTCAATTGTGGACCATT
TGAATTCAAAAATAACATGTTTGTAGCTAAAATTCAACTTTTGAATGAGGCACTGTTATCAATTA
ACCTTTGAGGAATAGATTCAATCTGATTTCCCCAGTTCGATACGATCAACCTGGCTATTGTAAAA
CTGTTACACTCTTAGATATACAAAACTCCCATTCGAACACTCTCTCTCACACCCCATTTATCACT
CATACCACCCACTTCGCACTGGGTCACCAATACGACAAAACCGAA
Right flanking sequence: Indices 4921 -- 5420
CCTCTACTACAACCCATTAACCACCCTTCCTACCACTTCCCTCCTTTTCGCTTTTCTCCTTCCTC
TCCCCCCACCTCATCGCGGTTACGAGCCCCTTTCTCATCACATCGCGCACATAGCACCAACGAGC
ACTCACTTGCACAGCCATGGCCCTGATCATTTGCAGTCGGTTCGACCCGACCAACACGATGTTGG
CCACGGTCCAGGTGGCCCTCGATGCTCACCAGCTCAAGGTACAGCTGGTCACCACGCTGCAGCTG
CTGATTAACGCCAGCTACACCCTCGACCGGCTGGTCAAGGTGACCAACGTGGTGTGGACAGCGCA
CCGGGGCTCCCAGGTGGTGGCCATGTGTACGCTGCGGGGCTCGGTGATGCTCTACCTGCCCCCCG
AGAACAAGATTGTGTCTGAGTGGACCACTCCGGCAGCCCTCCTGTTGCTCGACTACCACTTCTCC
CAGCACACCCAGACGGGGTTTGGGTGTGATGTCGGGGGCAACTTG
Found at i:4879 original size:23 final size:23
Alignment explanation
Indices: 4853--4919 Score: 102
Period size: 23 Copynumber: 3.0 Consensus size: 23
4843 GAAACACCAC
4853 CACCCACACACCACCACCCACAG
1 CACCCACACACCACCACCCACAG
*
4876 CACCCACAGCACCAACA-CCACAG
1 CACCCACA-CACCACCACCCACAG
4899 CA-CCACACACCACCACCCACA
1 CACCCACACACCACCACCCACA
4920 CCCTCTACTA
Statistics
Matches: 40, Mismatches: 2, Indels: 5
0.85 0.04 0.11
Matches are distributed among these distances:
21 7 0.17
22 10 0.25
23 16 0.40
24 7 0.17
ACGTcount: A:0.37, C:0.58, G:0.04, T:0.00
Consensus pattern (23 bp):
CACCCACACACCACCACCCACAG
Left flanking sequence: Indices 4353 -- 4852
GTAATGAACAGAGCTTGTTTAGGAGAAGTGGAGTCAAGTGTGATGAAAGTCGTAGAGTGTGGTTT
GACGAAAGTCGCAGAATATGGGTTGACGAAAGTCGTAGAGTATGGAGTGATGGAGGTTCGTAGTG
AGTTCTTCATCCCAGCAATGCCATCAACAAATCAGTTTAACCGCTAGATAGTCCACTAATACAAT
AAAAAGACGATGAAAACACAACTGAATTAAAGTTCTGAACTCTCAATTGTGGACCATTTGAATTC
AAAAATAACATGTTTGTAGCTAAAATTCAACTTTTGAATGAGGCACTGTTATCAATTAACCTTTG
AGGAATAGATTCAATCTGATTTCCCCAGTTCGATACGATCAACCTGGCTATTGTAAAACTGTTAC
ACTCTTAGATATACAAAACTCCCATTCGAACACTCTCTCTCACACCCCATTTATCACTCATACCA
CCCACTTCGCACTGGGTCACCAATACGACAAAACCGAAACACCAC
Right flanking sequence: Indices 4920 -- 5419
CCCTCTACTACAACCCATTAACCACCCTTCCTACCACTTCCCTCCTTTTCGCTTTTCTCCTTCCT
CTCCCCCCACCTCATCGCGGTTACGAGCCCCTTTCTCATCACATCGCGCACATAGCACCAACGAG
CACTCACTTGCACAGCCATGGCCCTGATCATTTGCAGTCGGTTCGACCCGACCAACACGATGTTG
GCCACGGTCCAGGTGGCCCTCGATGCTCACCAGCTCAAGGTACAGCTGGTCACCACGCTGCAGCT
GCTGATTAACGCCAGCTACACCCTCGACCGGCTGGTCAAGGTGACCAACGTGGTGTGGACAGCGC
ACCGGGGCTCCCAGGTGGTGGCCATGTGTACGCTGCGGGGCTCGGTGATGCTCTACCTGCCCCCC
GAGAACAAGATTGTGTCTGAGTGGACCACTCCGGCAGCCCTCCTGTTGCTCGACTACCACTTCTC
CCAGCACACCCAGACGGGGTTTGGGTGTGATGTCGGGGGCAACTT
Found at i:6131 original size:24 final size:24
Alignment explanation
Indices: 6099--6144 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
6089 GCCGTGGGTG
*
6099 GACGACCACCACC-AGTTGGCCATC
1 GACGACCA-CACCGAGGTGGCCATC
*
6123 GACGCCCACACCGAGGTGGCCA
1 GACGACCACACCGAGGTGGCCA
6145 AGCCCAAGCC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 4 0.21
24 15 0.79
ACGTcount: A:0.24, C:0.41, G:0.26, T:0.09
Consensus pattern (24 bp):
GACGACCACACCGAGGTGGCCATC
Left flanking sequence: Indices 5599 -- 6098
CGTTCCCCGGCCACGTCGAGCCCGTGCAGCGAATATTGGTCGTCGACAACGGGTCCCACTTTGCC
ACCAGTGCCAAGGGGGACCGGTTCATCAACCTCTACCAGGTCGCGAGTTCGACTCCCGGCGCACC
CGCGCTCGCGGCGCACGGGAAGCCGCCCCAGGTGTTCGTGTGCGCCCACCCGGTGTCGGACATCG
CGTTGGGAGCCCAGGGCGACCGTCTGGTGCTTGTGGCGTTGACCGGCGAGGGAACCACCGAGGTG
TTCAACGACCCGCTCCGGGCCCAAACGCTCCAGAACCCGCAAAAGAAGAAGCGGAGGGGGCCTCC
GGTGACGTCTCGGCCCCCGCTGGGCGGGTTCTCGCTCACCCGTCCGCCGGCCGAGATCAAACTGG
CCCAGGACGCCTTGCTACCGGTGATCGCCACCACCGTGAGCCGGGAGGTGGTGGTGTACGCGTGG
CTCGAGCAGGCCACGGTGCCCCACTTCGACACCATGCCGTGGGTG
Right flanking sequence: Indices 6145 -- 6644
AGCCCAAGCCGTCGTTGCCCGTGACCAACCACGAGGAGCTGAGCCACGACGTGGCCGCCACCAAG
CACTACGTCGAGGCCCGCACCATTGTCAGCGACGGACACAACCTCCGCGACCTCGACAACGACCT
GGACGACGACGAGGACGAGCTGTTGGCGGAAAAGCTCGAGAAGACGCTGGCGACGCCCCAGCCGG
CCAAAAAGAGCAAAAAGAAGGTCAAGGGCAAGCTGGCCGCCACCCTCACCCTCATGTTGACCCAG
GCGTTGCGCAACAACGACCACCTGATGCTCGAGGCGGTGTTGGTGAACCGCCAGCCCGACATCAT
CAAGAACACCATCGCCAAGCTCGACGCACTGCTTGCGGTGGCGCTCTTGGACCGGTTGCTGGAGC
GGATCCAGCGCCAGGCCACCAAGTTTGACCAGCTCAACTTCTGGTTGAAGTGGATCATCATCATC
CACGGGGCGGTGCTTGCGCTGATGCCCAACTTGCTGGCGAAGTTG
Found at i:8235 original size:12 final size:12
Alignment explanation
Indices: 8220--8270 Score: 79
Period size: 11 Copynumber: 4.4 Consensus size: 12
8210 CGGAATGGGT
8220 CTGGGGGTGAAA
1 CTGGGGGTGAAA
8232 CT-GGGGTGAAA
1 CTGGGGGTGAAA
8243 CT-GGGGTGAAA
1 CTGGGGGTGAAA
8254 CTGGGGGTGAAA
1 CTGGGGGTGAAA
*
8266 ATGGG
1 CTGGG
8271 TGACAGAAAG
Statistics
Matches: 37, Mismatches: 1, Indels: 2
0.93 0.03 0.05
Matches are distributed among these distances:
11 22 0.59
12 15 0.41
ACGTcount: A:0.25, C:0.08, G:0.49, T:0.18
Consensus pattern (12 bp):
CTGGGGGTGAAA
Left flanking sequence: Indices 7720 -- 8219
GTATAGTTAACAAGCGAGTTCCACACACGTGATGTCGCTAACAGTGAAATACTAGCGCTATCATA
TCGTCTTCCGACAATAAAACACTCGCGTGCTTTCATCGTATTCCAACAGTCCGATATGTCGTAAC
TCGGGCCAAATACGGGAGCTGTAGTAAATCGCAGACTGCAAAAGACAGAATTCTACCCAATGGGA
CACCTGGAATTGTTTTCCTGTGTCCCATTTCATATCGTATCATCAGCGGTTCAGGGGCGGGTATA
TAAAGCACTGGCTCGCCTCTTAAAAGAGCACCCAGATATACCCTTAAGTTCAAGACTGTCTAGCT
ACAAAGGGTGGTACCTACGGAGTATCCCGTGCGGGTACTAGTTTGAGCGTTTTAACACATAGTCC
TTCCAATATGTGGCCTCCAGACTTTCGTTTTCGATATGAGTCTGGAGGTGGTCTGGGAATGGTTT
GGGGGTGAGATTGAGAATGGGTTTAACGTGAGTCTCGGAATGGGT
Right flanking sequence: Indices 8271 -- 8770
TGACAGAAAGCGATAAAAGAGGCACCAAACCCTTACCATTCAGTCAAATTCTGCTATGAATGGGA
ACTACTGCCACCCATAGTCTACCTCTGGCTGAGTTGGCTTCGATCAACCCATGGCCCAGAACTGG
TTGCATGATACGATAAAACCAGACGATAATACCAATACGAAAAAGACATTTTCCCAGTACTACTA
ATACCTAGCTTTTCCACCCCTCGCACTCCCGTTCCCCTTAGTCATTTTTCCACTATTTCCGTGCG
GCTTACCAGACGCGTCTCACCATGAACAACGACACGGTGGCCCGGATCTTCCAGAGCGAGGGGTT
CCAGAAGCCCGACACGAAGATCCGTGTCGACGCGCTTCTGCTTCTGAGCCGGTACTTGGAGTTGT
TTGTCAACGAGGCGATTGAGCGGGCGAACGAGCAGCGGATCCACGAGTCCAAGCAGGCGTCCAAC
AACCCGATCGAGCGCGAGACCCCGCGGGATAACAAGATTACGCGT
Found at i:8250 original size:22 final size:23
Alignment explanation
Indices: 8223--8270 Score: 80
Period size: 23 Copynumber: 2.1 Consensus size: 23
8213 AATGGGTCTG
*
8223 GGGGTGAAACT-GGGGTGAAACT
1 GGGGTGAAACTGGGGGTGAAAAT
8245 GGGGTGAAACTGGGGGTGAAAAT
1 GGGGTGAAACTGGGGGTGAAAAT
8268 GGG
1 GGG
8271 TGACAGAAAG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
22 11 0.46
23 13 0.54
ACGTcount: A:0.27, C:0.06, G:0.50, T:0.17
Consensus pattern (23 bp):
GGGGTGAAACTGGGGGTGAAAAT
Left flanking sequence: Indices 7723 -- 8222
TAGTTAACAAGCGAGTTCCACACACGTGATGTCGCTAACAGTGAAATACTAGCGCTATCATATCG
TCTTCCGACAATAAAACACTCGCGTGCTTTCATCGTATTCCAACAGTCCGATATGTCGTAACTCG
GGCCAAATACGGGAGCTGTAGTAAATCGCAGACTGCAAAAGACAGAATTCTACCCAATGGGACAC
CTGGAATTGTTTTCCTGTGTCCCATTTCATATCGTATCATCAGCGGTTCAGGGGCGGGTATATAA
AGCACTGGCTCGCCTCTTAAAAGAGCACCCAGATATACCCTTAAGTTCAAGACTGTCTAGCTACA
AAGGGTGGTACCTACGGAGTATCCCGTGCGGGTACTAGTTTGAGCGTTTTAACACATAGTCCTTC
CAATATGTGGCCTCCAGACTTTCGTTTTCGATATGAGTCTGGAGGTGGTCTGGGAATGGTTTGGG
GGTGAGATTGAGAATGGGTTTAACGTGAGTCTCGGAATGGGTCTG
Right flanking sequence: Indices 8271 -- 8770
TGACAGAAAGCGATAAAAGAGGCACCAAACCCTTACCATTCAGTCAAATTCTGCTATGAATGGGA
ACTACTGCCACCCATAGTCTACCTCTGGCTGAGTTGGCTTCGATCAACCCATGGCCCAGAACTGG
TTGCATGATACGATAAAACCAGACGATAATACCAATACGAAAAAGACATTTTCCCAGTACTACTA
ATACCTAGCTTTTCCACCCCTCGCACTCCCGTTCCCCTTAGTCATTTTTCCACTATTTCCGTGCG
GCTTACCAGACGCGTCTCACCATGAACAACGACACGGTGGCCCGGATCTTCCAGAGCGAGGGGTT
CCAGAAGCCCGACACGAAGATCCGTGTCGACGCGCTTCTGCTTCTGAGCCGGTACTTGGAGTTGT
TTGTCAACGAGGCGATTGAGCGGGCGAACGAGCAGCGGATCCACGAGTCCAAGCAGGCGTCCAAC
AACCCGATCGAGCGCGAGACCCCGCGGGATAACAAGATTACGCGT
Found at i:8999 original size:16 final size:16
Alignment explanation
Indices: 8963--9002 Score: 53
Period size: 16 Copynumber: 2.5 Consensus size: 16
8953 GTTTACAGAG
*
8963 ATGACCATGTGAATTG
1 ATGACCATGTGAATTA
* *
8979 GTGACCATTTGAATTA
1 ATGACCATGTGAATTA
8995 ATGACCAT
1 ATGACCAT
9003 CCAGAATAGA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.33, C:0.15, G:0.20, T:0.33
Consensus pattern (16 bp):
ATGACCATGTGAATTA
Left flanking sequence: Indices 8463 -- 8962
CTAATACCTAGCTTTTCCACCCCTCGCACTCCCGTTCCCCTTAGTCATTTTTCCACTATTTCCGT
GCGGCTTACCAGACGCGTCTCACCATGAACAACGACACGGTGGCCCGGATCTTCCAGAGCGAGGG
GTTCCAGAAGCCCGACACGAAGATCCGTGTCGACGCGCTTCTGCTTCTGAGCCGGTACTTGGAGT
TGTTTGTCAACGAGGCGATTGAGCGGGCGAACGAGCAGCGGATCCACGAGTCCAAGCAGGCGTCC
AACAACCCGATCGAGCGCGAGACCCCGCGGGATAACAAGATTACGCGTGACCACCTCGTCAAGGT
GGCTGGAATGTTAGTATTGGATTTTTAGGTAATATATGGGTTAAGAAGAGGAGACAGGGGGGACT
AGTAGGATTTGAAGGTGACTAGTGGAGGGGACTAGTGGAGCTTTCAAAGAGTTTGTGAGTTTGTG
AGTCTGCATCATTTGACGAATAAAGGGGTGTTTATGTTTACAGAG
Right flanking sequence: Indices 9003 -- 9502
CCAGAATAGAAACTATCATTAGAATCTATCCTTAGAATATATCCTTAGAATATAAACTATTCTTA
GCCTGTATTCAACGCCTACGTTACACTTCGGTGTCAGCCTAGAATGCCAAGTTAGCCCATGATCA
CGCACGTGTGCTAATGCAACGCGATTGTGTTGGGTAGCCAAGCTCTAGAGCCTAGTCTAGCGATA
TCACTAACGTAGTTTATATTTAGTCATTCTCAGCTTTGTGCTGTTTTAAACCAATTCCTTAAGCC
CCTATCAAACCAGATAATTTTCCCCGTCTTTCTCGTTCCTGTCGTTCCTGTCGTTCCTATCGTTC
CTATCATTCCAATCTCATTCCTACCATCATTCCCTCTCCTCTATTCCATCCTCTTTCGGGTGGCA
CTCGCGCTTAGTCATTCCCCATGACGTCATGCCAAAAATAACCTGTTTCACCTGCCAATGGACAG
CCCACGGAATGTGCCAACAACCGGGCGGAGTAGCGCGTGCATTAG
Found at i:9031 original size:13 final size:13
Alignment explanation
Indices: 9009--9053 Score: 63
Period size: 13 Copynumber: 3.5 Consensus size: 13
8999 CCATCCAGAA
* *
9009 TAGAAACTATCAT
1 TAGAATCTATCCT
9022 TAGAATCTATCCT
1 TAGAATCTATCCT
*
9035 TAGAATATATCCT
1 TAGAATCTATCCT
9048 TAGAAT
1 TAGAAT
9054 ATAAACTATT
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
13 29 1.00
ACGTcount: A:0.40, C:0.16, G:0.09, T:0.36
Consensus pattern (13 bp):
TAGAATCTATCCT
Left flanking sequence: Indices 8509 -- 9008
ATTTTTCCACTATTTCCGTGCGGCTTACCAGACGCGTCTCACCATGAACAACGACACGGTGGCCC
GGATCTTCCAGAGCGAGGGGTTCCAGAAGCCCGACACGAAGATCCGTGTCGACGCGCTTCTGCTT
CTGAGCCGGTACTTGGAGTTGTTTGTCAACGAGGCGATTGAGCGGGCGAACGAGCAGCGGATCCA
CGAGTCCAAGCAGGCGTCCAACAACCCGATCGAGCGCGAGACCCCGCGGGATAACAAGATTACGC
GTGACCACCTCGTCAAGGTGGCTGGAATGTTAGTATTGGATTTTTAGGTAATATATGGGTTAAGA
AGAGGAGACAGGGGGGACTAGTAGGATTTGAAGGTGACTAGTGGAGGGGACTAGTGGAGCTTTCA
AAGAGTTTGTGAGTTTGTGAGTCTGCATCATTTGACGAATAAAGGGGTGTTTATGTTTACAGAGA
TGACCATGTGAATTGGTGACCATTTGAATTAATGACCATCCAGAA
Right flanking sequence: Indices 9054 -- 9553
ATAAACTATTCTTAGCCTGTATTCAACGCCTACGTTACACTTCGGTGTCAGCCTAGAATGCCAAG
TTAGCCCATGATCACGCACGTGTGCTAATGCAACGCGATTGTGTTGGGTAGCCAAGCTCTAGAGC
CTAGTCTAGCGATATCACTAACGTAGTTTATATTTAGTCATTCTCAGCTTTGTGCTGTTTTAAAC
CAATTCCTTAAGCCCCTATCAAACCAGATAATTTTCCCCGTCTTTCTCGTTCCTGTCGTTCCTGT
CGTTCCTATCGTTCCTATCATTCCAATCTCATTCCTACCATCATTCCCTCTCCTCTATTCCATCC
TCTTTCGGGTGGCACTCGCGCTTAGTCATTCCCCATGACGTCATGCCAAAAATAACCTGTTTCAC
CTGCCAATGGACAGCCCACGGAATGTGCCAACAACCGGGCGGAGTAGCGCGTGCATTAGTCAGCC
TGGGTTTAGACACACCCTACTGTCTGCTTGTGCGCTGCGTTTGTC
Found at i:9054 original size:13 final size:13
Alignment explanation
Indices: 9016--9056 Score: 64
Period size: 13 Copynumber: 3.2 Consensus size: 13
9006 GAATAGAAAC
* *
9016 TATCATTAGAATC
1 TATCCTTAGAATA
9029 TATCCTTAGAATA
1 TATCCTTAGAATA
9042 TATCCTTAGAATA
1 TATCCTTAGAATA
9055 TA
1 TA
9057 AACTATTCTT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
13 26 1.00
ACGTcount: A:0.39, C:0.15, G:0.07, T:0.39
Consensus pattern (13 bp):
TATCCTTAGAATA
Left flanking sequence: Indices 8516 -- 9015
CACTATTTCCGTGCGGCTTACCAGACGCGTCTCACCATGAACAACGACACGGTGGCCCGGATCTT
CCAGAGCGAGGGGTTCCAGAAGCCCGACACGAAGATCCGTGTCGACGCGCTTCTGCTTCTGAGCC
GGTACTTGGAGTTGTTTGTCAACGAGGCGATTGAGCGGGCGAACGAGCAGCGGATCCACGAGTCC
AAGCAGGCGTCCAACAACCCGATCGAGCGCGAGACCCCGCGGGATAACAAGATTACGCGTGACCA
CCTCGTCAAGGTGGCTGGAATGTTAGTATTGGATTTTTAGGTAATATATGGGTTAAGAAGAGGAG
ACAGGGGGGACTAGTAGGATTTGAAGGTGACTAGTGGAGGGGACTAGTGGAGCTTTCAAAGAGTT
TGTGAGTTTGTGAGTCTGCATCATTTGACGAATAAAGGGGTGTTTATGTTTACAGAGATGACCAT
GTGAATTGGTGACCATTTGAATTAATGACCATCCAGAATAGAAAC
Right flanking sequence: Indices 9057 -- 9556
AACTATTCTTAGCCTGTATTCAACGCCTACGTTACACTTCGGTGTCAGCCTAGAATGCCAAGTTA
GCCCATGATCACGCACGTGTGCTAATGCAACGCGATTGTGTTGGGTAGCCAAGCTCTAGAGCCTA
GTCTAGCGATATCACTAACGTAGTTTATATTTAGTCATTCTCAGCTTTGTGCTGTTTTAAACCAA
TTCCTTAAGCCCCTATCAAACCAGATAATTTTCCCCGTCTTTCTCGTTCCTGTCGTTCCTGTCGT
TCCTATCGTTCCTATCATTCCAATCTCATTCCTACCATCATTCCCTCTCCTCTATTCCATCCTCT
TTCGGGTGGCACTCGCGCTTAGTCATTCCCCATGACGTCATGCCAAAAATAACCTGTTTCACCTG
CCAATGGACAGCCCACGGAATGTGCCAACAACCGGGCGGAGTAGCGCGTGCATTAGTCAGCCTGG
GTTTAGACACACCCTACTGTCTGCTTGTGCGCTGCGTTTGTCTAT
Found at i:9309 original size:9 final size:9
Alignment explanation
Indices: 9295--9329 Score: 61
Period size: 9 Copynumber: 3.9 Consensus size: 9
9285 CCCGTCTTTC
9295 TCGTTCCTG
1 TCGTTCCTG
9304 TCGTTCCTG
1 TCGTTCCTG
*
9313 TCGTTCCTA
1 TCGTTCCTG
9322 TCGTTCCT
1 TCGTTCCT
9330 ATCATTCCAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
9 25 1.00
ACGTcount: A:0.03, C:0.34, G:0.17, T:0.46
Consensus pattern (9 bp):
TCGTTCCTG
Left flanking sequence: Indices 8795 -- 9294
ATGTTAGTATTGGATTTTTAGGTAATATATGGGTTAAGAAGAGGAGACAGGGGGGACTAGTAGGA
TTTGAAGGTGACTAGTGGAGGGGACTAGTGGAGCTTTCAAAGAGTTTGTGAGTTTGTGAGTCTGC
ATCATTTGACGAATAAAGGGGTGTTTATGTTTACAGAGATGACCATGTGAATTGGTGACCATTTG
AATTAATGACCATCCAGAATAGAAACTATCATTAGAATCTATCCTTAGAATATATCCTTAGAATA
TAAACTATTCTTAGCCTGTATTCAACGCCTACGTTACACTTCGGTGTCAGCCTAGAATGCCAAGT
TAGCCCATGATCACGCACGTGTGCTAATGCAACGCGATTGTGTTGGGTAGCCAAGCTCTAGAGCC
TAGTCTAGCGATATCACTAACGTAGTTTATATTTAGTCATTCTCAGCTTTGTGCTGTTTTAAACC
AATTCCTTAAGCCCCTATCAAACCAGATAATTTTCCCCGTCTTTC
Right flanking sequence: Indices 9330 -- 9829
ATCATTCCAATCTCATTCCTACCATCATTCCCTCTCCTCTATTCCATCCTCTTTCGGGTGGCACT
CGCGCTTAGTCATTCCCCATGACGTCATGCCAAAAATAACCTGTTTCACCTGCCAATGGACAGCC
CACGGAATGTGCCAACAACCGGGCGGAGTAGCGCGTGCATTAGTCAGCCTGGGTTTAGACACACC
CTACTGTCTGCTTGTGCGCTGCGTTTGTCTATTGCTTAGTTCTATTGTTTCCTGCAACTGGCTGC
AAATCGCCCCATTGAGCCATGGGTGCAAATCGAGAAGATCGAGCGTGGGTCAGAGTCGTAATTCG
TGGGGCGGGCTACACCCGGACCATGGCCCAGAACCCGTAGTCGTACTTGGCGGGGCCTATTTTGG
CCAACGCCTTGGGTTTGGGCTGGGTCACGTGAACATATAGCGGAACCACCACCGGTTCGGGCAGC
TCCAGCGTCACTTCGAGCAGCACCAGGGCCCAGTTGTGGCCGGTT
Found at i:9330 original size:9 final size:9
Alignment explanation
Indices: 9295--9337 Score: 59
Period size: 9 Copynumber: 4.8 Consensus size: 9
9285 CCCGTCTTTC
*
9295 TCGTTCCTG
1 TCGTTCCTA
*
9304 TCGTTCCTG
1 TCGTTCCTA
9313 TCGTTCCTA
1 TCGTTCCTA
9322 TCGTTCCTA
1 TCGTTCCTA
*
9331 TCATTCC
1 TCGTTCC
9338 AATCTCATTC
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
9 32 1.00
ACGTcount: A:0.07, C:0.35, G:0.14, T:0.44
Consensus pattern (9 bp):
TCGTTCCTA
Left flanking sequence: Indices 8795 -- 9294
ATGTTAGTATTGGATTTTTAGGTAATATATGGGTTAAGAAGAGGAGACAGGGGGGACTAGTAGGA
TTTGAAGGTGACTAGTGGAGGGGACTAGTGGAGCTTTCAAAGAGTTTGTGAGTTTGTGAGTCTGC
ATCATTTGACGAATAAAGGGGTGTTTATGTTTACAGAGATGACCATGTGAATTGGTGACCATTTG
AATTAATGACCATCCAGAATAGAAACTATCATTAGAATCTATCCTTAGAATATATCCTTAGAATA
TAAACTATTCTTAGCCTGTATTCAACGCCTACGTTACACTTCGGTGTCAGCCTAGAATGCCAAGT
TAGCCCATGATCACGCACGTGTGCTAATGCAACGCGATTGTGTTGGGTAGCCAAGCTCTAGAGCC
TAGTCTAGCGATATCACTAACGTAGTTTATATTTAGTCATTCTCAGCTTTGTGCTGTTTTAAACC
AATTCCTTAAGCCCCTATCAAACCAGATAATTTTCCCCGTCTTTC
Right flanking sequence: Indices 9338 -- 9837
AATCTCATTCCTACCATCATTCCCTCTCCTCTATTCCATCCTCTTTCGGGTGGCACTCGCGCTTA
GTCATTCCCCATGACGTCATGCCAAAAATAACCTGTTTCACCTGCCAATGGACAGCCCACGGAAT
GTGCCAACAACCGGGCGGAGTAGCGCGTGCATTAGTCAGCCTGGGTTTAGACACACCCTACTGTC
TGCTTGTGCGCTGCGTTTGTCTATTGCTTAGTTCTATTGTTTCCTGCAACTGGCTGCAAATCGCC
CCATTGAGCCATGGGTGCAAATCGAGAAGATCGAGCGTGGGTCAGAGTCGTAATTCGTGGGGCGG
GCTACACCCGGACCATGGCCCAGAACCCGTAGTCGTACTTGGCGGGGCCTATTTTGGCCAACGCC
TTGGGTTTGGGCTGGGTCACGTGAACATATAGCGGAACCACCACCGGTTCGGGCAGCTCCAGCGT
CACTTCGAGCAGCACCAGGGCCCAGTTGTGGCCGGTTTCCACGTA
Found at i:11180 original size:18 final size:19
Alignment explanation
Indices: 11157--11198 Score: 68
Period size: 20 Copynumber: 2.2 Consensus size: 19
11147 CCCGACAGTG
11157 GGCAGTG-GGCACCGCACC
1 GGCAGTGAGGCACCGCACC
11175 GGCAGTGTAGGCACCGCACC
1 GGCAGTG-AGGCACCGCACC
11195 GGCA
1 GGCA
11199 ATGCGGGCAC
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
18 7 0.32
20 15 0.68
ACGTcount: A:0.19, C:0.36, G:0.38, T:0.07
Consensus pattern (19 bp):
GGCAGTGAGGCACCGCACC
Left flanking sequence: Indices 10657 -- 11156
GTGCTGGCACTGGGGGCAGAACCGGTGCTCGACCAGGTACTGGCACTGGTAGAGGGAGCGCGCAC
CGGGGCACTGGGGGCAGAAGTAGACGTCCGCAAGCGCAAGGGCCTCGCGGGGCAGTGGCGGGGTC
TCATCGCCACGGAACGGGTGGATCGTTGCAGGACTCGGCCGGCGCCACGACATCTGACACCGATG
CGGCGGTGATCGCGCGCTGCCCTTGCACCAGATTGTGCGCACCACGCACCACACGCGCACCGCAC
CAACGCGTGGGCTGCACACCTGCACACGGCCAGCACCTGGCTAATCTGGGGTAGACCAGTGGCGG
AAACGGGGGCACGACGCTGTTCGCGGGTTACATGCGTGGGCGAGGCGTTCTTGTGCCAGGCAGCA
GCGGTTGAGCAGCGAAGGGAGCTTGCGGTGTTCTTGGCGGCTTGGCACGGGCGATAGTCGAGCCA
CTTTGGGGCCAGACCCTGTTTTGGACCGCGGTTGTCCCGACAGTG
Right flanking sequence: Indices 11199 -- 11698
ATGCGGGCACCGTTACGTAATGGAGGGTGGTGAGAGGTGTGAGAGGTGCGAGAGGTGTTCGTGAG
GGTGTGAGAAAGGAGCACCAGTAACCGGAGGAATTGGTGGGTTATGAGTGTAATCAGTAGACTAA
TCAGTAGCGAATAATCAGTAACGAGAATAAAACTCATCAATAGTGAATAATCAGCAACGCGAATC
AGTAGCCAACTGTGAATCAGTGCCTCAATGCGAGTGACGAGTGGCGAGTGACCAGTGACGTGTGT
GTGGGGCTACGGTGGGGTCGATGGACTGACGCAAGCGTGGCTAGACCCCGACATAGCGTGATGCG
AGGGTTAGCAGTTTGACGTGGGACAAAGGTGATGCTCTGCGTGGCACCACGCGTGACAGCCGTGC
GACGGACAACCTGTCGGGTGTTGGTGAGGTGGAGGTGGTGGAGGTGGAGGTGGTGAGAGGTGGTG
GACAAAGAGGTGGTGAAAGAGGTGGTGAAAGAGGTGGTGGGAGAG
Found at i:11207 original size:20 final size:20
Alignment explanation
Indices: 11163--11210 Score: 69
Period size: 20 Copynumber: 2.4 Consensus size: 20
11153 AGTGGGCAGT
* *
11163 GGGCACCGCACCGGCAGTGT
1 GGGCACCGCACCGGCAATGC
*
11183 AGGCACCGCACCGGCAATGC
1 GGGCACCGCACCGGCAATGC
11203 GGGCACCG
1 GGGCACCG
11211 TTACGTAATG
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.19, C:0.38, G:0.38, T:0.06
Consensus pattern (20 bp):
GGGCACCGCACCGGCAATGC
Left flanking sequence: Indices 10663 -- 11162
GCACTGGGGGCAGAACCGGTGCTCGACCAGGTACTGGCACTGGTAGAGGGAGCGCGCACCGGGGC
ACTGGGGGCAGAAGTAGACGTCCGCAAGCGCAAGGGCCTCGCGGGGCAGTGGCGGGGTCTCATCG
CCACGGAACGGGTGGATCGTTGCAGGACTCGGCCGGCGCCACGACATCTGACACCGATGCGGCGG
TGATCGCGCGCTGCCCTTGCACCAGATTGTGCGCACCACGCACCACACGCGCACCGCACCAACGC
GTGGGCTGCACACCTGCACACGGCCAGCACCTGGCTAATCTGGGGTAGACCAGTGGCGGAAACGG
GGGCACGACGCTGTTCGCGGGTTACATGCGTGGGCGAGGCGTTCTTGTGCCAGGCAGCAGCGGTT
GAGCAGCGAAGGGAGCTTGCGGTGTTCTTGGCGGCTTGGCACGGGCGATAGTCGAGCCACTTTGG
GGCCAGACCCTGTTTTGGACCGCGGTTGTCCCGACAGTGGGCAGT
Right flanking sequence: Indices 11211 -- 11710
TTACGTAATGGAGGGTGGTGAGAGGTGTGAGAGGTGCGAGAGGTGTTCGTGAGGGTGTGAGAAAG
GAGCACCAGTAACCGGAGGAATTGGTGGGTTATGAGTGTAATCAGTAGACTAATCAGTAGCGAAT
AATCAGTAACGAGAATAAAACTCATCAATAGTGAATAATCAGCAACGCGAATCAGTAGCCAACTG
TGAATCAGTGCCTCAATGCGAGTGACGAGTGGCGAGTGACCAGTGACGTGTGTGTGGGGCTACGG
TGGGGTCGATGGACTGACGCAAGCGTGGCTAGACCCCGACATAGCGTGATGCGAGGGTTAGCAGT
TTGACGTGGGACAAAGGTGATGCTCTGCGTGGCACCACGCGTGACAGCCGTGCGACGGACAACCT
GTCGGGTGTTGGTGAGGTGGAGGTGGTGGAGGTGGAGGTGGTGAGAGGTGGTGGACAAAGAGGTG
GTGAAAGAGGTGGTGAAAGAGGTGGTGGGAGAGGTGGGGACAAGA
Found at i:11634 original size:15 final size:15
Alignment explanation
Indices: 11610--11651 Score: 68
Period size: 15 Copynumber: 2.8 Consensus size: 15
11600 TGTCGGGTGT
11610 TGGT-GAGGTGGAGG
1 TGGTGGAGGTGGAGG
11624 TGGTGGAGGTGGAGG
1 TGGTGGAGGTGGAGG
11639 TGGTGAGAGGTGG
1 TGGTG-GAGGTGG
11652 TGGACAAAGA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
14 4 0.15
15 15 0.58
16 7 0.27
ACGTcount: A:0.14, C:0.00, G:0.64, T:0.21
Consensus pattern (15 bp):
TGGTGGAGGTGGAGG
Left flanking sequence: Indices 11110 -- 11609
CACTTTGGGGCCAGACCCTGTTTTGGACCGCGGTTGTCCCGACAGTGGGCAGTGGGCACCGCACC
GGCAGTGTAGGCACCGCACCGGCAATGCGGGCACCGTTACGTAATGGAGGGTGGTGAGAGGTGTG
AGAGGTGCGAGAGGTGTTCGTGAGGGTGTGAGAAAGGAGCACCAGTAACCGGAGGAATTGGTGGG
TTATGAGTGTAATCAGTAGACTAATCAGTAGCGAATAATCAGTAACGAGAATAAAACTCATCAAT
AGTGAATAATCAGCAACGCGAATCAGTAGCCAACTGTGAATCAGTGCCTCAATGCGAGTGACGAG
TGGCGAGTGACCAGTGACGTGTGTGTGGGGCTACGGTGGGGTCGATGGACTGACGCAAGCGTGGC
TAGACCCCGACATAGCGTGATGCGAGGGTTAGCAGTTTGACGTGGGACAAAGGTGATGCTCTGCG
TGGCACCACGCGTGACAGCCGTGCGACGGACAACCTGTCGGGTGT
Right flanking sequence: Indices 11652 -- 12151
TGGACAAAGAGGTGGTGAAAGAGGTGGTGAAAGAGGTGGTGGGAGAGGTGGGGACAAGAATGACA
CAAAACCAGAGTAGTTAGGCCAAGAGGTGGGGAGCTGTGGGTGTGAAATATGTTCCTGTGAATAG
TTCCATAAGTTTCACCGTGTAATTTTACCAGATTCGGTGGAGAATTTCTTTAGTTTCACTGGTTT
CACAGTTAATTTCTATAGTTTCACTGGTTTCACTGTGTGTTTCATAGTTAGTTTCACTGTCTCAG
TTGGTTTCATCGGTAGTGCTACGTTCGTTCGCTAGGCTCGCTGTCTCCTTCTCTATTTCTCTCCC
CTGTCCCTGTTCTTCAGTCCCTGTCCCTGATTATCCGCCCCTATCCCTGTTTCTTCCCTTGTCTT
CCCTGTCTCCTTCCTTTCTTCCCCTCCTCCCTTTGTCCTCTTGTCCTCAGTTGCTATTCTCACCC
GCTAGGATTGACCTGCCCGCCAGCGGGCCGGGTGCAGATGACACG
Found at i:11650 original size:10 final size:9
Alignment explanation
Indices: 11616--11655 Score: 50
Period size: 9 Copynumber: 4.7 Consensus size: 9
11606 GTGTTGGTGA
11616 GGTGGAGGT
1 GGTGGAGGT
11625 GGTGGA---
1 GGTGGAGGT
11631 GGTGGAGGT
1 GGTGGAGGT
11640 GGTGAGAGGT
1 GGTG-GAGGT
11650 GGTGGA
1 GGTGGA
11656 CAAAGAGGTG
Statistics
Matches: 27, Mismatches: 0, Indels: 8
0.77 0.00 0.23
Matches are distributed among these distances:
6 6 0.22
9 12 0.44
10 9 0.33
ACGTcount: A:0.15, C:0.00, G:0.65, T:0.20
Consensus pattern (9 bp):
GGTGGAGGT
Left flanking sequence: Indices 11116 -- 11615
GGGGCCAGACCCTGTTTTGGACCGCGGTTGTCCCGACAGTGGGCAGTGGGCACCGCACCGGCAGT
GTAGGCACCGCACCGGCAATGCGGGCACCGTTACGTAATGGAGGGTGGTGAGAGGTGTGAGAGGT
GCGAGAGGTGTTCGTGAGGGTGTGAGAAAGGAGCACCAGTAACCGGAGGAATTGGTGGGTTATGA
GTGTAATCAGTAGACTAATCAGTAGCGAATAATCAGTAACGAGAATAAAACTCATCAATAGTGAA
TAATCAGCAACGCGAATCAGTAGCCAACTGTGAATCAGTGCCTCAATGCGAGTGACGAGTGGCGA
GTGACCAGTGACGTGTGTGTGGGGCTACGGTGGGGTCGATGGACTGACGCAAGCGTGGCTAGACC
CCGACATAGCGTGATGCGAGGGTTAGCAGTTTGACGTGGGACAAAGGTGATGCTCTGCGTGGCAC
CACGCGTGACAGCCGTGCGACGGACAACCTGTCGGGTGTTGGTGA
Right flanking sequence: Indices 11656 -- 12155
CAAAGAGGTGGTGAAAGAGGTGGTGAAAGAGGTGGTGGGAGAGGTGGGGACAAGAATGACACAAA
ACCAGAGTAGTTAGGCCAAGAGGTGGGGAGCTGTGGGTGTGAAATATGTTCCTGTGAATAGTTCC
ATAAGTTTCACCGTGTAATTTTACCAGATTCGGTGGAGAATTTCTTTAGTTTCACTGGTTTCACA
GTTAATTTCTATAGTTTCACTGGTTTCACTGTGTGTTTCATAGTTAGTTTCACTGTCTCAGTTGG
TTTCATCGGTAGTGCTACGTTCGTTCGCTAGGCTCGCTGTCTCCTTCTCTATTTCTCTCCCCTGT
CCCTGTTCTTCAGTCCCTGTCCCTGATTATCCGCCCCTATCCCTGTTTCTTCCCTTGTCTTCCCT
GTCTCCTTCCTTTCTTCCCCTCCTCCCTTTGTCCTCTTGTCCTCAGTTGCTATTCTCACCCGCTA
GGATTGACCTGCCCGCCAGCGGGCCGGGTGCAGATGACACGGGGC
Found at i:11672 original size:12 final size:12
Alignment explanation
Indices: 11635--11702 Score: 77
Period size: 12 Copynumber: 5.6 Consensus size: 12
11625 GGTGGAGGTG
11635 GAGGTGGTG--A
1 GAGGTGGTGAAA
11645 GAGGTGGTGGACAAA
1 GAGGTGGT-G--AAA
11660 GAGGTGGTGAAA
1 GAGGTGGTGAAA
11672 GAGGTGGTGAAA
1 GAGGTGGTGAAA
**
11684 GAGGTGGTGGGA
1 GAGGTGGTGAAA
11696 GAGGTGG
1 GAGGTGG
11703 GGACAAGAAT
Statistics
Matches: 51, Mismatches: 2, Indels: 8
0.84 0.03 0.13
Matches are distributed among these distances:
10 8 0.16
11 1 0.02
12 32 0.63
14 1 0.02
15 9 0.18
ACGTcount: A:0.26, C:0.01, G:0.56, T:0.16
Consensus pattern (12 bp):
GAGGTGGTGAAA
Left flanking sequence: Indices 11135 -- 11634
GACCGCGGTTGTCCCGACAGTGGGCAGTGGGCACCGCACCGGCAGTGTAGGCACCGCACCGGCAA
TGCGGGCACCGTTACGTAATGGAGGGTGGTGAGAGGTGTGAGAGGTGCGAGAGGTGTTCGTGAGG
GTGTGAGAAAGGAGCACCAGTAACCGGAGGAATTGGTGGGTTATGAGTGTAATCAGTAGACTAAT
CAGTAGCGAATAATCAGTAACGAGAATAAAACTCATCAATAGTGAATAATCAGCAACGCGAATCA
GTAGCCAACTGTGAATCAGTGCCTCAATGCGAGTGACGAGTGGCGAGTGACCAGTGACGTGTGTG
TGGGGCTACGGTGGGGTCGATGGACTGACGCAAGCGTGGCTAGACCCCGACATAGCGTGATGCGA
GGGTTAGCAGTTTGACGTGGGACAAAGGTGATGCTCTGCGTGGCACCACGCGTGACAGCCGTGCG
ACGGACAACCTGTCGGGTGTTGGTGAGGTGGAGGTGGTGGAGGTG
Right flanking sequence: Indices 11703 -- 12202
GGACAAGAATGACACAAAACCAGAGTAGTTAGGCCAAGAGGTGGGGAGCTGTGGGTGTGAAATAT
GTTCCTGTGAATAGTTCCATAAGTTTCACCGTGTAATTTTACCAGATTCGGTGGAGAATTTCTTT
AGTTTCACTGGTTTCACAGTTAATTTCTATAGTTTCACTGGTTTCACTGTGTGTTTCATAGTTAG
TTTCACTGTCTCAGTTGGTTTCATCGGTAGTGCTACGTTCGTTCGCTAGGCTCGCTGTCTCCTTC
TCTATTTCTCTCCCCTGTCCCTGTTCTTCAGTCCCTGTCCCTGATTATCCGCCCCTATCCCTGTT
TCTTCCCTTGTCTTCCCTGTCTCCTTCCTTTCTTCCCCTCCTCCCTTTGTCCTCTTGTCCTCAGT
TGCTATTCTCACCCGCTAGGATTGACCTGCCCGCCAGCGGGCCGGGTGCAGATGACACGGGGCTT
AGGGTACGGTTACGGCCGCGACAGCGACGTCCGGTCCGACACACA
Found at i:11684 original size:24 final size:24
Alignment explanation
Indices: 11635--11710 Score: 77
Period size: 24 Copynumber: 3.1 Consensus size: 24
11625 GGTGGAGGTG
11635 GAGGTGGTGAGAGGTGGTGGACAAA
1 GAGGTGGTGAGAGGTGGTGGA-AAA
11660 GAGGTGGTGAAAGAGGTGGT-G-AAA
1 GAGGTGGTG--AGAGGTGGTGGAAAA
*
11684 GAGGTGGTGGGAGAGGTGG-GGACAA
1 GAGGTGGT--GAGAGGTGGTGGAAAA
11709 GA
1 GA
11711 ATGACACAAA
Statistics
Matches: 44, Mismatches: 1, Indels: 12
0.77 0.02 0.21
Matches are distributed among these distances:
24 20 0.45
25 13 0.30
26 2 0.05
27 9 0.20
ACGTcount: A:0.29, C:0.03, G:0.54, T:0.14
Consensus pattern (24 bp):
GAGGTGGTGAGAGGTGGTGGAAAA
Left flanking sequence: Indices 11135 -- 11634
GACCGCGGTTGTCCCGACAGTGGGCAGTGGGCACCGCACCGGCAGTGTAGGCACCGCACCGGCAA
TGCGGGCACCGTTACGTAATGGAGGGTGGTGAGAGGTGTGAGAGGTGCGAGAGGTGTTCGTGAGG
GTGTGAGAAAGGAGCACCAGTAACCGGAGGAATTGGTGGGTTATGAGTGTAATCAGTAGACTAAT
CAGTAGCGAATAATCAGTAACGAGAATAAAACTCATCAATAGTGAATAATCAGCAACGCGAATCA
GTAGCCAACTGTGAATCAGTGCCTCAATGCGAGTGACGAGTGGCGAGTGACCAGTGACGTGTGTG
TGGGGCTACGGTGGGGTCGATGGACTGACGCAAGCGTGGCTAGACCCCGACATAGCGTGATGCGA
GGGTTAGCAGTTTGACGTGGGACAAAGGTGATGCTCTGCGTGGCACCACGCGTGACAGCCGTGCG
ACGGACAACCTGTCGGGTGTTGGTGAGGTGGAGGTGGTGGAGGTG
Right flanking sequence: Indices 11711 -- 12210
ATGACACAAAACCAGAGTAGTTAGGCCAAGAGGTGGGGAGCTGTGGGTGTGAAATATGTTCCTGT
GAATAGTTCCATAAGTTTCACCGTGTAATTTTACCAGATTCGGTGGAGAATTTCTTTAGTTTCAC
TGGTTTCACAGTTAATTTCTATAGTTTCACTGGTTTCACTGTGTGTTTCATAGTTAGTTTCACTG
TCTCAGTTGGTTTCATCGGTAGTGCTACGTTCGTTCGCTAGGCTCGCTGTCTCCTTCTCTATTTC
TCTCCCCTGTCCCTGTTCTTCAGTCCCTGTCCCTGATTATCCGCCCCTATCCCTGTTTCTTCCCT
TGTCTTCCCTGTCTCCTTCCTTTCTTCCCCTCCTCCCTTTGTCCTCTTGTCCTCAGTTGCTATTC
TCACCCGCTAGGATTGACCTGCCCGCCAGCGGGCCGGGTGCAGATGACACGGGGCTTAGGGTACG
GTTACGGCCGCGACAGCGACGTCCGGTCCGACACACAGGTGGTGG
Found at i:12046 original size:21 final size:20
Alignment explanation
Indices: 12020--12064 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 20
12010 TCCGCCCCTA
*
12020 TCCCTGT-TTCTTCCCTTGTCT
1 TCCCTGTCTCCTT-CCTT-TCT
12041 TCCCTGTCTCCTTCCTTTCT
1 TCCCTGTCTCCTTCCTTTCT
12061 TCCC
1 TCCC
12065 CTCCTCCCTT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
20 7 0.32
21 11 0.50
22 4 0.18
ACGTcount: A:0.00, C:0.44, G:0.07, T:0.49
Consensus pattern (20 bp):
TCCCTGTCTCCTTCCTTTCT
Left flanking sequence: Indices 11520 -- 12019
TGCGAGGGTTAGCAGTTTGACGTGGGACAAAGGTGATGCTCTGCGTGGCACCACGCGTGACAGCC
GTGCGACGGACAACCTGTCGGGTGTTGGTGAGGTGGAGGTGGTGGAGGTGGAGGTGGTGAGAGGT
GGTGGACAAAGAGGTGGTGAAAGAGGTGGTGAAAGAGGTGGTGGGAGAGGTGGGGACAAGAATGA
CACAAAACCAGAGTAGTTAGGCCAAGAGGTGGGGAGCTGTGGGTGTGAAATATGTTCCTGTGAAT
AGTTCCATAAGTTTCACCGTGTAATTTTACCAGATTCGGTGGAGAATTTCTTTAGTTTCACTGGT
TTCACAGTTAATTTCTATAGTTTCACTGGTTTCACTGTGTGTTTCATAGTTAGTTTCACTGTCTC
AGTTGGTTTCATCGGTAGTGCTACGTTCGTTCGCTAGGCTCGCTGTCTCCTTCTCTATTTCTCTC
CCCTGTCCCTGTTCTTCAGTCCCTGTCCCTGATTATCCGCCCCTA
Right flanking sequence: Indices 12065 -- 12564
CTCCTCCCTTTGTCCTCTTGTCCTCAGTTGCTATTCTCACCCGCTAGGATTGACCTGCCCGCCAG
CGGGCCGGGTGCAGATGACACGGGGCTTAGGGTACGGTTACGGCCGCGACAGCGACGTCCGGTCC
GACACACAGGTGGTGGTGCCACCCGATCCAGGGCAGGACTACGAGAGCAGGCACATACGTCCGGA
GGAAGAGGAGGGAAGAGGGAAGAGGAGGGAAGAGGAGGCCACCAAAGAGCCAACAGAGCCAGTCC
ACCTAAAAACGAAAGAGACACCAAGAAAACACACCATAAACACAAGAGACACCACGTAAACAAAA
GCACCACGCACCAGCTTCGCTCCCCAGCCGGCTGGCAAAAGAAACCCCGCAAGCCGTTTCACACC
GTAGCCACGCCTAAAAATACCCCCAATAAGGACGGCCTGACGGCCCTACGAAGCGAACAGAACAA
AACTAGGTCACCGTCTCCACCGTCTCACCGTCTCACCCACGGTCA
Found at i:12275 original size:10 final size:10
Alignment explanation
Indices: 12260--12297 Score: 55
Period size: 10 Copynumber: 4.1 Consensus size: 10
12250 TACGTCCGGA
12260 GGAAGAGGAG
1 GGAAGAGGAG
12270 GG-A-A-GAG
1 GGAAGAGGAG
12277 GGAAGAGGAG
1 GGAAGAGGAG
12287 GGAAGAGGAG
1 GGAAGAGGAG
12297 G
1 G
12298 CCACCAAAGA
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
7 5 0.20
8 2 0.08
9 2 0.08
10 16 0.64
ACGTcount: A:0.39, C:0.00, G:0.61, T:0.00
Consensus pattern (10 bp):
GGAAGAGGAG
Left flanking sequence: Indices 11760 -- 12259
TGAAATATGTTCCTGTGAATAGTTCCATAAGTTTCACCGTGTAATTTTACCAGATTCGGTGGAGA
ATTTCTTTAGTTTCACTGGTTTCACAGTTAATTTCTATAGTTTCACTGGTTTCACTGTGTGTTTC
ATAGTTAGTTTCACTGTCTCAGTTGGTTTCATCGGTAGTGCTACGTTCGTTCGCTAGGCTCGCTG
TCTCCTTCTCTATTTCTCTCCCCTGTCCCTGTTCTTCAGTCCCTGTCCCTGATTATCCGCCCCTA
TCCCTGTTTCTTCCCTTGTCTTCCCTGTCTCCTTCCTTTCTTCCCCTCCTCCCTTTGTCCTCTTG
TCCTCAGTTGCTATTCTCACCCGCTAGGATTGACCTGCCCGCCAGCGGGCCGGGTGCAGATGACA
CGGGGCTTAGGGTACGGTTACGGCCGCGACAGCGACGTCCGGTCCGACACACAGGTGGTGGTGCC
ACCCGATCCAGGGCAGGACTACGAGAGCAGGCACATACGTCCGGA
Right flanking sequence: Indices 12298 -- 12797
CCACCAAAGAGCCAACAGAGCCAGTCCACCTAAAAACGAAAGAGACACCAAGAAAACACACCATA
AACACAAGAGACACCACGTAAACAAAAGCACCACGCACCAGCTTCGCTCCCCAGCCGGCTGGCAA
AAGAAACCCCGCAAGCCGTTTCACACCGTAGCCACGCCTAAAAATACCCCCAATAAGGACGGCCT
GACGGCCCTACGAAGCGAACAGAACAAAACTAGGTCACCGTCTCCACCGTCTCACCGTCTCACCC
ACGGTCAGCAGGCCCGACACGTCATTCCCCCATTCCACCGCCGTCGTCGCTGACCCCTGACACCA
CCACCCGCTCCTGCACACGGCCCGATTGAGCAAAATCGTGACACGAGTGGACACAGGAAATAATC
GGGGCTAAACGAGCCAATTTAACCCGATTTAATGTGAGATGCTGGCAACGCGTCACTGGCAACAG
TAACCAGGTGGTGGCGGCGGCGATCACGGCCACCCCTGCGGCCGG
Found at i:12282 original size:17 final size:17
Alignment explanation
Indices: 12260--12294 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
12250 TACGTCCGGA
12260 GGAAGAGGAGGGAAGAG
1 GGAAGAGGAGGGAAGAG
12277 GGAAGAGGAGGGAAGAG
1 GGAAGAGGAGGGAAGAG
12294 G
1 G
12295 AGGCCACCAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.40, C:0.00, G:0.60, T:0.00
Consensus pattern (17 bp):
GGAAGAGGAGGGAAGAG
Left flanking sequence: Indices 11760 -- 12259
TGAAATATGTTCCTGTGAATAGTTCCATAAGTTTCACCGTGTAATTTTACCAGATTCGGTGGAGA
ATTTCTTTAGTTTCACTGGTTTCACAGTTAATTTCTATAGTTTCACTGGTTTCACTGTGTGTTTC
ATAGTTAGTTTCACTGTCTCAGTTGGTTTCATCGGTAGTGCTACGTTCGTTCGCTAGGCTCGCTG
TCTCCTTCTCTATTTCTCTCCCCTGTCCCTGTTCTTCAGTCCCTGTCCCTGATTATCCGCCCCTA
TCCCTGTTTCTTCCCTTGTCTTCCCTGTCTCCTTCCTTTCTTCCCCTCCTCCCTTTGTCCTCTTG
TCCTCAGTTGCTATTCTCACCCGCTAGGATTGACCTGCCCGCCAGCGGGCCGGGTGCAGATGACA
CGGGGCTTAGGGTACGGTTACGGCCGCGACAGCGACGTCCGGTCCGACACACAGGTGGTGGTGCC
ACCCGATCCAGGGCAGGACTACGAGAGCAGGCACATACGTCCGGA
Right flanking sequence: Indices 12295 -- 12794
AGGCCACCAAAGAGCCAACAGAGCCAGTCCACCTAAAAACGAAAGAGACACCAAGAAAACACACC
ATAAACACAAGAGACACCACGTAAACAAAAGCACCACGCACCAGCTTCGCTCCCCAGCCGGCTGG
CAAAAGAAACCCCGCAAGCCGTTTCACACCGTAGCCACGCCTAAAAATACCCCCAATAAGGACGG
CCTGACGGCCCTACGAAGCGAACAGAACAAAACTAGGTCACCGTCTCCACCGTCTCACCGTCTCA
CCCACGGTCAGCAGGCCCGACACGTCATTCCCCCATTCCACCGCCGTCGTCGCTGACCCCTGACA
CCACCACCCGCTCCTGCACACGGCCCGATTGAGCAAAATCGTGACACGAGTGGACACAGGAAATA
ATCGGGGCTAAACGAGCCAATTTAACCCGATTTAATGTGAGATGCTGGCAACGCGTCACTGGCAA
CAGTAACCAGGTGGTGGCGGCGGCGATCACGGCCACCCCTGCGGC
Found at i:12550 original size:8 final size:8
Alignment explanation
Indices: 12527--12556 Score: 51
Period size: 8 Copynumber: 3.6 Consensus size: 8
12517 CAAAACTAGG
12527 TCACCGTC
1 TCACCGTC
12535 TCCACCGTC
1 T-CACCGTC
12544 TCACCGTC
1 TCACCGTC
12552 TCACC
1 TCACC
12557 CACGGTCAGC
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
8 13 0.62
9 8 0.38
ACGTcount: A:0.13, C:0.53, G:0.10, T:0.23
Consensus pattern (8 bp):
TCACCGTC
Left flanking sequence: Indices 12027 -- 12526
TTCTTCCCTTGTCTTCCCTGTCTCCTTCCTTTCTTCCCCTCCTCCCTTTGTCCTCTTGTCCTCAG
TTGCTATTCTCACCCGCTAGGATTGACCTGCCCGCCAGCGGGCCGGGTGCAGATGACACGGGGCT
TAGGGTACGGTTACGGCCGCGACAGCGACGTCCGGTCCGACACACAGGTGGTGGTGCCACCCGAT
CCAGGGCAGGACTACGAGAGCAGGCACATACGTCCGGAGGAAGAGGAGGGAAGAGGGAAGAGGAG
GGAAGAGGAGGCCACCAAAGAGCCAACAGAGCCAGTCCACCTAAAAACGAAAGAGACACCAAGAA
AACACACCATAAACACAAGAGACACCACGTAAACAAAAGCACCACGCACCAGCTTCGCTCCCCAG
CCGGCTGGCAAAAGAAACCCCGCAAGCCGTTTCACACCGTAGCCACGCCTAAAAATACCCCCAAT
AAGGACGGCCTGACGGCCCTACGAAGCGAACAGAACAAAACTAGG
Right flanking sequence: Indices 12557 -- 13056
CACGGTCAGCAGGCCCGACACGTCATTCCCCCATTCCACCGCCGTCGTCGCTGACCCCTGACACC
ACCACCCGCTCCTGCACACGGCCCGATTGAGCAAAATCGTGACACGAGTGGACACAGGAAATAAT
CGGGGCTAAACGAGCCAATTTAACCCGATTTAATGTGAGATGCTGGCAACGCGTCACTGGCAACA
GTAACCAGGTGGTGGCGGCGGCGATCACGGCCACCCCTGCGGCCGGCCCCTGGCCACTGCCACCG
CTCGCCCTCCTCCTCGCTCCTCCTCCCGCTCCCTCTCCTCCCACCTCACCCTCTCCTCCCCCTCG
CTCCCTCTCCTATCCCTCACCTCGCCCCTGCCCCTCGTCCCACCGCAACCTCGTACCCCCCCATT
TCCCGATCAAACACCCGTCGCCATTTACGGGGTCACTCCCGGTGTCGTCATTGTACATATCGCAA
TAATTTTTTCCCAAAAATTGCCCAGCAAAAACGCCGCACTTTTAC
Found at i:12856 original size:18 final size:17
Alignment explanation
Indices: 12833--12892 Score: 66
Period size: 18 Copynumber: 3.3 Consensus size: 17
12823 CTCCTCCTCG
12833 CTCCTCCTCCCGCTCCCT
1 CTCCTCC-CCCGCTCCCT
* *
12851 CTCCTCCCACCTCACCCT
1 CTCCTCCC-CCGCTCCCT
12869 CTCCTCCCCCTCGCTCCCT
1 CTCCT-CCCC-CGCTCCCT
12888 CTCCT
1 CTCCT
12893 ATCCCTCACC
Statistics
Matches: 35, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
17 1 0.03
18 20 0.57
19 14 0.40
ACGTcount: A:0.03, C:0.67, G:0.03, T:0.27
Consensus pattern (17 bp):
CTCCTCCCCCGCTCCCT
Left flanking sequence: Indices 12333 -- 12832
ACGAAAGAGACACCAAGAAAACACACCATAAACACAAGAGACACCACGTAAACAAAAGCACCACG
CACCAGCTTCGCTCCCCAGCCGGCTGGCAAAAGAAACCCCGCAAGCCGTTTCACACCGTAGCCAC
GCCTAAAAATACCCCCAATAAGGACGGCCTGACGGCCCTACGAAGCGAACAGAACAAAACTAGGT
CACCGTCTCCACCGTCTCACCGTCTCACCCACGGTCAGCAGGCCCGACACGTCATTCCCCCATTC
CACCGCCGTCGTCGCTGACCCCTGACACCACCACCCGCTCCTGCACACGGCCCGATTGAGCAAAA
TCGTGACACGAGTGGACACAGGAAATAATCGGGGCTAAACGAGCCAATTTAACCCGATTTAATGT
GAGATGCTGGCAACGCGTCACTGGCAACAGTAACCAGGTGGTGGCGGCGGCGATCACGGCCACCC
CTGCGGCCGGCCCCTGGCCACTGCCACCGCTCGCCCTCCTCCTCG
Right flanking sequence: Indices 12893 -- 13392
ATCCCTCACCTCGCCCCTGCCCCTCGTCCCACCGCAACCTCGTACCCCCCCATTTCCCGATCAAA
CACCCGTCGCCATTTACGGGGTCACTCCCGGTGTCGTCATTGTACATATCGCAATAATTTTTTCC
CAAAAATTGCCCAGCAAAAACGCCGCACTTTTACCGGTCACCAGAGCACGGCCGTCGCCACGGGG
CCCCGCCGCGCCCTGCCCCCTCGGAGCACCCCCACCCCGGCCCCGGCCCCGTAAAACCCCCGTCT
CCCCAGCCCCCACCGGCTCCGCTCGGCCCCGCGCGTCTCCGGTCGCAACTGCCGATACATCTAGG
GGATGTCACGTCAACTATCGGTCCCCGCCATTGTCTCTTTGTTATAATATACCTTATAGGCAACC
CTGTACATCATGCAACATCACAAGTTAGTGTGCGATGCACGGCAAGTGCAGCACCGGCGGGCCCA
CGAGCGCACCGCCGGCACCGCGAGCACCGGCCCGTAGACCGCTGG
Found at i:12900 original size:36 final size:36
Alignment explanation
Indices: 12833--12902 Score: 97
Period size: 36 Copynumber: 1.9 Consensus size: 36
12823 CTCCTCCTCG
* *
12833 CTCCTCCTCCCGCTCCCTCTCCTCCCACCTCACCCT
1 CTCCTCCCCCCGCTCCCTCTCCTACCACCTCACCCT
*
12869 CTCCTCCCCCTCGCTCCCTCTCCTATC-CCTCACC
1 CTCCTCCCCC-CGCTCCCTCTCCTACCACCTCACC
12903 TCGCCCCTGC
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
36 16 0.53
37 14 0.47
ACGTcount: A:0.06, C:0.66, G:0.03, T:0.26
Consensus pattern (36 bp):
CTCCTCCCCCCGCTCCCTCTCCTACCACCTCACCCT
Left flanking sequence: Indices 12333 -- 12832
ACGAAAGAGACACCAAGAAAACACACCATAAACACAAGAGACACCACGTAAACAAAAGCACCACG
CACCAGCTTCGCTCCCCAGCCGGCTGGCAAAAGAAACCCCGCAAGCCGTTTCACACCGTAGCCAC
GCCTAAAAATACCCCCAATAAGGACGGCCTGACGGCCCTACGAAGCGAACAGAACAAAACTAGGT
CACCGTCTCCACCGTCTCACCGTCTCACCCACGGTCAGCAGGCCCGACACGTCATTCCCCCATTC
CACCGCCGTCGTCGCTGACCCCTGACACCACCACCCGCTCCTGCACACGGCCCGATTGAGCAAAA
TCGTGACACGAGTGGACACAGGAAATAATCGGGGCTAAACGAGCCAATTTAACCCGATTTAATGT
GAGATGCTGGCAACGCGTCACTGGCAACAGTAACCAGGTGGTGGCGGCGGCGATCACGGCCACCC
CTGCGGCCGGCCCCTGGCCACTGCCACCGCTCGCCCTCCTCCTCG
Right flanking sequence: Indices 12903 -- 13402
TCGCCCCTGCCCCTCGTCCCACCGCAACCTCGTACCCCCCCATTTCCCGATCAAACACCCGTCGC
CATTTACGGGGTCACTCCCGGTGTCGTCATTGTACATATCGCAATAATTTTTTCCCAAAAATTGC
CCAGCAAAAACGCCGCACTTTTACCGGTCACCAGAGCACGGCCGTCGCCACGGGGCCCCGCCGCG
CCCTGCCCCCTCGGAGCACCCCCACCCCGGCCCCGGCCCCGTAAAACCCCCGTCTCCCCAGCCCC
CACCGGCTCCGCTCGGCCCCGCGCGTCTCCGGTCGCAACTGCCGATACATCTAGGGGATGTCACG
TCAACTATCGGTCCCCGCCATTGTCTCTTTGTTATAATATACCTTATAGGCAACCCTGTACATCA
TGCAACATCACAAGTTAGTGTGCGATGCACGGCAAGTGCAGCACCGGCGGGCCCACGAGCGCACC
GCCGGCACCGCGAGCACCGGCCCGTAGACCGCTGGCGCCGCCCCC
Found at i:12916 original size:37 final size:37
Alignment explanation
Indices: 12835--12922 Score: 92
Period size: 37 Copynumber: 2.4 Consensus size: 37
12825 CCTCCTCGCT
* * * *
12835 CCTCCTCC-CGCTCCCTCTCCTCCCACCTCACCCTCT
1 CCTCCCCCTCGCTCCCTCTCCTACCACCTCACCCGCC
*
12871 CCTCCCCCTCGCTCCCTCTCCTATC-CCTCACCTCGCC
1 CCTCCCCCTCGCTCCCTCTCCTACCACCTCACC-CGCC
*
12908 CCTGCCCCTCG-TCCC
1 CCTCCCCCTCGCTCCC
12923 ACCGCAACCT
Statistics
Matches: 44, Mismatches: 6, Indels: 4
0.81 0.11 0.07
Matches are distributed among these distances:
36 18 0.41
37 26 0.59
ACGTcount: A:0.05, C:0.66, G:0.06, T:0.24
Consensus pattern (37 bp):
CCTCCCCCTCGCTCCCTCTCCTACCACCTCACCCGCC
Left flanking sequence: Indices 12335 -- 12834
GAAAGAGACACCAAGAAAACACACCATAAACACAAGAGACACCACGTAAACAAAAGCACCACGCA
CCAGCTTCGCTCCCCAGCCGGCTGGCAAAAGAAACCCCGCAAGCCGTTTCACACCGTAGCCACGC
CTAAAAATACCCCCAATAAGGACGGCCTGACGGCCCTACGAAGCGAACAGAACAAAACTAGGTCA
CCGTCTCCACCGTCTCACCGTCTCACCCACGGTCAGCAGGCCCGACACGTCATTCCCCCATTCCA
CCGCCGTCGTCGCTGACCCCTGACACCACCACCCGCTCCTGCACACGGCCCGATTGAGCAAAATC
GTGACACGAGTGGACACAGGAAATAATCGGGGCTAAACGAGCCAATTTAACCCGATTTAATGTGA
GATGCTGGCAACGCGTCACTGGCAACAGTAACCAGGTGGTGGCGGCGGCGATCACGGCCACCCCT
GCGGCCGGCCCCTGGCCACTGCCACCGCTCGCCCTCCTCCTCGCT
Right flanking sequence: Indices 12923 -- 13422
ACCGCAACCTCGTACCCCCCCATTTCCCGATCAAACACCCGTCGCCATTTACGGGGTCACTCCCG
GTGTCGTCATTGTACATATCGCAATAATTTTTTCCCAAAAATTGCCCAGCAAAAACGCCGCACTT
TTACCGGTCACCAGAGCACGGCCGTCGCCACGGGGCCCCGCCGCGCCCTGCCCCCTCGGAGCACC
CCCACCCCGGCCCCGGCCCCGTAAAACCCCCGTCTCCCCAGCCCCCACCGGCTCCGCTCGGCCCC
GCGCGTCTCCGGTCGCAACTGCCGATACATCTAGGGGATGTCACGTCAACTATCGGTCCCCGCCA
TTGTCTCTTTGTTATAATATACCTTATAGGCAACCCTGTACATCATGCAACATCACAAGTTAGTG
TGCGATGCACGGCAAGTGCAGCACCGGCGGGCCCACGAGCGCACCGCCGGCACCGCGAGCACCGG
CCCGTAGACCGCTGGCGCCGCCCCCCTCCTCCTCCCGTGCCACCT
Found at i:13477 original size:20 final size:19
Alignment explanation
Indices: 13449--13489 Score: 55
Period size: 20 Copynumber: 2.1 Consensus size: 19
13439 CGGCAACCCG
13449 CGCCCCCGGCGCGCGCGCCC
1 CGCCCCCGGCGC-CGCGCCC
* *
13469 CGCCGCCGGCGCCGGGCCC
1 CGCCCCCGGCGCCGCGCCC
13488 CG
1 CG
13490 ATGACATCAC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 8 0.42
20 11 0.58
ACGTcount: A:0.00, C:0.61, G:0.39, T:0.00
Consensus pattern (19 bp):
CGCCCCCGGCGCCGCGCCC
Left flanking sequence: Indices 12949 -- 13448
CCGATCAAACACCCGTCGCCATTTACGGGGTCACTCCCGGTGTCGTCATTGTACATATCGCAATA
ATTTTTTCCCAAAAATTGCCCAGCAAAAACGCCGCACTTTTACCGGTCACCAGAGCACGGCCGTC
GCCACGGGGCCCCGCCGCGCCCTGCCCCCTCGGAGCACCCCCACCCCGGCCCCGGCCCCGTAAAA
CCCCCGTCTCCCCAGCCCCCACCGGCTCCGCTCGGCCCCGCGCGTCTCCGGTCGCAACTGCCGAT
ACATCTAGGGGATGTCACGTCAACTATCGGTCCCCGCCATTGTCTCTTTGTTATAATATACCTTA
TAGGCAACCCTGTACATCATGCAACATCACAAGTTAGTGTGCGATGCACGGCAAGTGCAGCACCG
GCGGGCCCACGAGCGCACCGCCGGCACCGCGAGCACCGGCCCGTAGACCGCTGGCGCCGCCCCCC
TCCTCCTCCCGTGCCACCTCTCCTCCCCTCCGCGCCGGCAACCCG
Right flanking sequence: Indices 13490 -- 13989
ATGACATCACCGGCCCAGCCAAACGTTCTAGATCCTCCCAAAAATAGGTGGTGGCCACGCGCATT
GCATACAGTATATATAGTGCCAGACGTCCGTCGGGGTGCCGCCACCGCGCTTACTGAGAGTGTTC
CCCATGAGTATATCGCCGCTATGCGCCTCCCCGTCGTTCCAGTTCCCCCCCGCCACCCCGTCGGC
GCTGCTCGATAAGCAGTACGACTACTTTACCATGCGCCCGTTCCCGCTGCTGATCGGGCTGGGGG
CCACCATCAAGGAGGAGATGGAGGCAGCCACCGCTGCGCCGGCGCTGCGGATGGTGTCGGCCGAG
ACCCTTGTGGACGGGGCCGGCGCCGGCGCGAGCCCCGCCAAGGGCCCCCAACCGGGGGCGGCTGC
CCCCGGGCTGAAGAAGAGCCCGAACAAGAGCCCCAGGAACTGGAGCACGACAGATAACAAAGGAA
ACAACGGAAACAACGACAACAACTCAAACAACAACAACTCAAACA
Found at i:13965 original size:18 final size:18
Alignment explanation
Indices: 13944--13982 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
13934 TAACAAAGGA
* *
13944 AACAACGGAAACAACGAC
1 AACAACGCAAACAACAAC
*
13962 AACAACTCAAACAACAAC
1 AACAACGCAAACAACAAC
13980 AAC
1 AAC
13983 TCAAACAACA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.59, C:0.31, G:0.08, T:0.03
Consensus pattern (18 bp):
AACAACGCAAACAACAAC
Left flanking sequence: Indices 13444 -- 13943
ACCCGCGCCCCCGGCGCGCGCGCCCCGCCGCCGGCGCCGGGCCCCGATGACATCACCGGCCCAGC
CAAACGTTCTAGATCCTCCCAAAAATAGGTGGTGGCCACGCGCATTGCATACAGTATATATAGTG
CCAGACGTCCGTCGGGGTGCCGCCACCGCGCTTACTGAGAGTGTTCCCCATGAGTATATCGCCGC
TATGCGCCTCCCCGTCGTTCCAGTTCCCCCCCGCCACCCCGTCGGCGCTGCTCGATAAGCAGTAC
GACTACTTTACCATGCGCCCGTTCCCGCTGCTGATCGGGCTGGGGGCCACCATCAAGGAGGAGAT
GGAGGCAGCCACCGCTGCGCCGGCGCTGCGGATGGTGTCGGCCGAGACCCTTGTGGACGGGGCCG
GCGCCGGCGCGAGCCCCGCCAAGGGCCCCCAACCGGGGGCGGCTGCCCCCGGGCTGAAGAAGAGC
CCGAACAAGAGCCCCAGGAACTGGAGCACGACAGATAACAAAGGA
Right flanking sequence: Indices 13983 -- 14482
TCAAACAACAACTCAAACAACACGAAAAACTCATACCAGACGAACAACTCAAACAACTCAAACAA
CTCAAACAACCCAAACATCTCATACCAGACGAATACCCATACCTATGCCGGCCATGGAGCGAAGG
GCACCCACAAACTCAGCCCACCGTACGGCGTCGCGATCAGTCCCAACCACAAAAGCACCCAAAAC
ACAGGCAACAGCCAAAACACACAGATCAACACACACAATCTGATCACCACACCACACAACCTGAT
CTCGGCTAACCACTCGGCCAACCTGATCGCGACCAACACCTCCACCAACACCTCCACCTCCCCCA
ACCCCTTCTTCATGGCCACCAGCCCGCGCACCGGCTCGTCGCACTCCTCCTCCACGCCGCTCTTT
ACTCCGTTCGCGTACGCGCCGGGCCCCTCCTCCGCGGGCGCGTCCTCCGGGCCCTCTGCTGGCAC
CTCCGGTGCGTTCCCCTTCAACGCCCCCTCCGCGGGCACCTCTGG
Found at i:13974 original size:9 final size:9
Alignment explanation
Indices: 13962--14069 Score: 80
Period size: 9 Copynumber: 12.0 Consensus size: 9
13952 AAACAACGAC
13962 AACAACTCA
1 AACAACTCA
13971 AACAA--C-
1 AACAACTCA
13977 AACAACTCAAA
1 AACAACTC--A
13988 CAACAACTCA
1 -AACAACTCA
*
13998 AACAACACGA
1 AACAACTC-A
14008 AA-AACTCA
1 AACAACTCA
* * ** *
14016 TACCAGACG
1 AACAACTCA
14025 AACAACTCA
1 AACAACTCA
14034 AACAACTCA
1 AACAACTCA
14043 AACAACTCA
1 AACAACTCA
*
14052 AACAACCCA
1 AACAACTCA
*
14061 AACATCTCA
1 AACAACTCA
14070 TACCAGACGA
Statistics
Matches: 76, Mismatches: 15, Indels: 16
0.71 0.14 0.15
Matches are distributed among these distances:
6 5 0.07
7 1 0.01
8 3 0.04
9 55 0.72
10 4 0.05
12 8 0.11
ACGTcount: A:0.55, C:0.33, G:0.03, T:0.09
Consensus pattern (9 bp):
AACAACTCA
Left flanking sequence: Indices 13462 -- 13961
CGCGCCCCGCCGCCGGCGCCGGGCCCCGATGACATCACCGGCCCAGCCAAACGTTCTAGATCCTC
CCAAAAATAGGTGGTGGCCACGCGCATTGCATACAGTATATATAGTGCCAGACGTCCGTCGGGGT
GCCGCCACCGCGCTTACTGAGAGTGTTCCCCATGAGTATATCGCCGCTATGCGCCTCCCCGTCGT
TCCAGTTCCCCCCCGCCACCCCGTCGGCGCTGCTCGATAAGCAGTACGACTACTTTACCATGCGC
CCGTTCCCGCTGCTGATCGGGCTGGGGGCCACCATCAAGGAGGAGATGGAGGCAGCCACCGCTGC
GCCGGCGCTGCGGATGGTGTCGGCCGAGACCCTTGTGGACGGGGCCGGCGCCGGCGCGAGCCCCG
CCAAGGGCCCCCAACCGGGGGCGGCTGCCCCCGGGCTGAAGAAGAGCCCGAACAAGAGCCCCAGG
AACTGGAGCACGACAGATAACAAAGGAAACAACGGAAACAACGAC
Right flanking sequence: Indices 14070 -- 14569
TACCAGACGAATACCCATACCTATGCCGGCCATGGAGCGAAGGGCACCCACAAACTCAGCCCACC
GTACGGCGTCGCGATCAGTCCCAACCACAAAAGCACCCAAAACACAGGCAACAGCCAAAACACAC
AGATCAACACACACAATCTGATCACCACACCACACAACCTGATCTCGGCTAACCACTCGGCCAAC
CTGATCGCGACCAACACCTCCACCAACACCTCCACCTCCCCCAACCCCTTCTTCATGGCCACCAG
CCCGCGCACCGGCTCGTCGCACTCCTCCTCCACGCCGCTCTTTACTCCGTTCGCGTACGCGCCGG
GCCCCTCCTCCGCGGGCGCGTCCTCCGGGCCCTCTGCTGGCACCTCCGGTGCGTTCCCCTTCAAC
GCCCCCTCCGCGGGCACCTCTGGTGGGCTGTTCCCCTTCAACGCCCCCTCTGCCCCCGGTGCGTT
CCCCTTTAACGCCCCCTTCGCGGGTGCCCCCACCGCCGCCCCCAC
Found at i:13977 original size:12 final size:12
Alignment explanation
Indices: 13960--14004 Score: 63
Period size: 12 Copynumber: 3.5 Consensus size: 12
13950 GGAAACAACG
13960 ACAACAACTCAAACA
1 ACAACAACTC--A-A
13975 ACAACAACTCAA
1 ACAACAACTCAA
13987 ACAACAACTCAA
1 ACAACAACTCAA
13999 ACAACA
1 ACAACA
14005 CGAAAAACTC
Statistics
Matches: 30, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
12 19 0.63
13 1 0.03
15 10 0.33
ACGTcount: A:0.60, C:0.33, G:0.00, T:0.07
Consensus pattern (12 bp):
ACAACAACTCAA
Left flanking sequence: Indices 13460 -- 13959
CGCGCGCCCCGCCGCCGGCGCCGGGCCCCGATGACATCACCGGCCCAGCCAAACGTTCTAGATCC
TCCCAAAAATAGGTGGTGGCCACGCGCATTGCATACAGTATATATAGTGCCAGACGTCCGTCGGG
GTGCCGCCACCGCGCTTACTGAGAGTGTTCCCCATGAGTATATCGCCGCTATGCGCCTCCCCGTC
GTTCCAGTTCCCCCCCGCCACCCCGTCGGCGCTGCTCGATAAGCAGTACGACTACTTTACCATGC
GCCCGTTCCCGCTGCTGATCGGGCTGGGGGCCACCATCAAGGAGGAGATGGAGGCAGCCACCGCT
GCGCCGGCGCTGCGGATGGTGTCGGCCGAGACCCTTGTGGACGGGGCCGGCGCCGGCGCGAGCCC
CGCCAAGGGCCCCCAACCGGGGGCGGCTGCCCCCGGGCTGAAGAAGAGCCCGAACAAGAGCCCCA
GGAACTGGAGCACGACAGATAACAAAGGAAACAACGGAAACAACG
Right flanking sequence: Indices 14005 -- 14504
CGAAAAACTCATACCAGACGAACAACTCAAACAACTCAAACAACTCAAACAACCCAAACATCTCA
TACCAGACGAATACCCATACCTATGCCGGCCATGGAGCGAAGGGCACCCACAAACTCAGCCCACC
GTACGGCGTCGCGATCAGTCCCAACCACAAAAGCACCCAAAACACAGGCAACAGCCAAAACACAC
AGATCAACACACACAATCTGATCACCACACCACACAACCTGATCTCGGCTAACCACTCGGCCAAC
CTGATCGCGACCAACACCTCCACCAACACCTCCACCTCCCCCAACCCCTTCTTCATGGCCACCAG
CCCGCGCACCGGCTCGTCGCACTCCTCCTCCACGCCGCTCTTTACTCCGTTCGCGTACGCGCCGG
GCCCCTCCTCCGCGGGCGCGTCCTCCGGGCCCTCTGCTGGCACCTCCGGTGCGTTCCCCTTCAAC
GCCCCCTCCGCGGGCACCTCTGGTGGGCTGTTCCCCTTCAACGCC
Found at i:14040 original size:27 final size:27
Alignment explanation
Indices: 14010--14080 Score: 79
Period size: 27 Copynumber: 2.6 Consensus size: 27
14000 CAACACGAAA
*
14010 AACTCATACCAGACGAACAACTCAAAC
1 AACTCATACCAGACGAACAACCCAAAC
* * ** *
14037 AACTCAAACAACTCAAACAACCCAAAC
1 AACTCATACCAGACGAACAACCCAAAC
*
14064 ATCTCATACCAGACGAA
1 AACTCATACCAGACGAA
14081 TACCCATACC
Statistics
Matches: 32, Mismatches: 12, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.49, C:0.34, G:0.06, T:0.11
Consensus pattern (27 bp):
AACTCATACCAGACGAACAACCCAAAC
Left flanking sequence: Indices 13510 -- 14009
AAACGTTCTAGATCCTCCCAAAAATAGGTGGTGGCCACGCGCATTGCATACAGTATATATAGTGC
CAGACGTCCGTCGGGGTGCCGCCACCGCGCTTACTGAGAGTGTTCCCCATGAGTATATCGCCGCT
ATGCGCCTCCCCGTCGTTCCAGTTCCCCCCCGCCACCCCGTCGGCGCTGCTCGATAAGCAGTACG
ACTACTTTACCATGCGCCCGTTCCCGCTGCTGATCGGGCTGGGGGCCACCATCAAGGAGGAGATG
GAGGCAGCCACCGCTGCGCCGGCGCTGCGGATGGTGTCGGCCGAGACCCTTGTGGACGGGGCCGG
CGCCGGCGCGAGCCCCGCCAAGGGCCCCCAACCGGGGGCGGCTGCCCCCGGGCTGAAGAAGAGCC
CGAACAAGAGCCCCAGGAACTGGAGCACGACAGATAACAAAGGAAACAACGGAAACAACGACAAC
AACTCAAACAACAACAACTCAAACAACAACTCAAACAACACGAAA
Right flanking sequence: Indices 14081 -- 14580
TACCCATACCTATGCCGGCCATGGAGCGAAGGGCACCCACAAACTCAGCCCACCGTACGGCGTCG
CGATCAGTCCCAACCACAAAAGCACCCAAAACACAGGCAACAGCCAAAACACACAGATCAACACA
CACAATCTGATCACCACACCACACAACCTGATCTCGGCTAACCACTCGGCCAACCTGATCGCGAC
CAACACCTCCACCAACACCTCCACCTCCCCCAACCCCTTCTTCATGGCCACCAGCCCGCGCACCG
GCTCGTCGCACTCCTCCTCCACGCCGCTCTTTACTCCGTTCGCGTACGCGCCGGGCCCCTCCTCC
GCGGGCGCGTCCTCCGGGCCCTCTGCTGGCACCTCCGGTGCGTTCCCCTTCAACGCCCCCTCCGC
GGGCACCTCTGGTGGGCTGTTCCCCTTCAACGCCCCCTCTGCCCCCGGTGCGTTCCCCTTTAACG
CCCCCTTCGCGGGTGCCCCCACCGCCGCCCCCACCGCCATGACCC
Found at i:14050 original size:36 final size:35
Alignment explanation
Indices: 13962--14052 Score: 105
Period size: 36 Copynumber: 2.5 Consensus size: 35
13952 AAACAACGAC
*
13962 AACAACTCAAACAACAACAACTCAAACAACAACTCA
1 AACAACTCAAACAAC-TCAACTCAAACAACAACTCA
* *
13998 AACAACACGAAA-AACTCATAC-CAGACGAACAACTCA
1 AACAACTC-AAACAACTCA-ACTCAAAC-AACAACTCA
14034 AACAACTCAAACAACTCAA
1 AACAACTCAAACAACTCAA
14053 ACAACCCAAA
Statistics
Matches: 47, Mismatches: 4, Indels: 9
0.78 0.07 0.15
Matches are distributed among these distances:
35 10 0.21
36 34 0.72
37 3 0.06
ACGTcount: A:0.56, C:0.32, G:0.03, T:0.09
Consensus pattern (35 bp):
AACAACTCAAACAACTCAACTCAAACAACAACTCA
Left flanking sequence: Indices 13462 -- 13961
CGCGCCCCGCCGCCGGCGCCGGGCCCCGATGACATCACCGGCCCAGCCAAACGTTCTAGATCCTC
CCAAAAATAGGTGGTGGCCACGCGCATTGCATACAGTATATATAGTGCCAGACGTCCGTCGGGGT
GCCGCCACCGCGCTTACTGAGAGTGTTCCCCATGAGTATATCGCCGCTATGCGCCTCCCCGTCGT
TCCAGTTCCCCCCCGCCACCCCGTCGGCGCTGCTCGATAAGCAGTACGACTACTTTACCATGCGC
CCGTTCCCGCTGCTGATCGGGCTGGGGGCCACCATCAAGGAGGAGATGGAGGCAGCCACCGCTGC
GCCGGCGCTGCGGATGGTGTCGGCCGAGACCCTTGTGGACGGGGCCGGCGCCGGCGCGAGCCCCG
CCAAGGGCCCCCAACCGGGGGCGGCTGCCCCCGGGCTGAAGAAGAGCCCGAACAAGAGCCCCAGG
AACTGGAGCACGACAGATAACAAAGGAAACAACGGAAACAACGAC
Right flanking sequence: Indices 14053 -- 14552
ACAACCCAAACATCTCATACCAGACGAATACCCATACCTATGCCGGCCATGGAGCGAAGGGCACC
CACAAACTCAGCCCACCGTACGGCGTCGCGATCAGTCCCAACCACAAAAGCACCCAAAACACAGG
CAACAGCCAAAACACACAGATCAACACACACAATCTGATCACCACACCACACAACCTGATCTCGG
CTAACCACTCGGCCAACCTGATCGCGACCAACACCTCCACCAACACCTCCACCTCCCCCAACCCC
TTCTTCATGGCCACCAGCCCGCGCACCGGCTCGTCGCACTCCTCCTCCACGCCGCTCTTTACTCC
GTTCGCGTACGCGCCGGGCCCCTCCTCCGCGGGCGCGTCCTCCGGGCCCTCTGCTGGCACCTCCG
GTGCGTTCCCCTTCAACGCCCCCTCCGCGGGCACCTCTGGTGGGCTGTTCCCCTTCAACGCCCCC
TCTGCCCCCGGTGCGTTCCCCTTTAACGCCCCCTTCGCGGGTGCC
Found at i:14291 original size:12 final size:12
Alignment explanation
Indices: 14274--14300 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
14264 CCTGATCGCG
14274 ACCAACACCTCC
1 ACCAACACCTCC
14286 ACCAACACCTCC
1 ACCAACACCTCC
14298 ACC
1 ACC
14301 TCCCCCAACC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.33, C:0.59, G:0.00, T:0.07
Consensus pattern (12 bp):
ACCAACACCTCC
Left flanking sequence: Indices 13774 -- 14273
CAGCCACCGCTGCGCCGGCGCTGCGGATGGTGTCGGCCGAGACCCTTGTGGACGGGGCCGGCGCC
GGCGCGAGCCCCGCCAAGGGCCCCCAACCGGGGGCGGCTGCCCCCGGGCTGAAGAAGAGCCCGAA
CAAGAGCCCCAGGAACTGGAGCACGACAGATAACAAAGGAAACAACGGAAACAACGACAACAACT
CAAACAACAACAACTCAAACAACAACTCAAACAACACGAAAAACTCATACCAGACGAACAACTCA
AACAACTCAAACAACTCAAACAACCCAAACATCTCATACCAGACGAATACCCATACCTATGCCGG
CCATGGAGCGAAGGGCACCCACAAACTCAGCCCACCGTACGGCGTCGCGATCAGTCCCAACCACA
AAAGCACCCAAAACACAGGCAACAGCCAAAACACACAGATCAACACACACAATCTGATCACCACA
CCACACAACCTGATCTCGGCTAACCACTCGGCCAACCTGATCGCG
Right flanking sequence: Indices 14301 -- 14800
TCCCCCAACCCCTTCTTCATGGCCACCAGCCCGCGCACCGGCTCGTCGCACTCCTCCTCCACGCC
GCTCTTTACTCCGTTCGCGTACGCGCCGGGCCCCTCCTCCGCGGGCGCGTCCTCCGGGCCCTCTG
CTGGCACCTCCGGTGCGTTCCCCTTCAACGCCCCCTCCGCGGGCACCTCTGGTGGGCTGTTCCCC
TTCAACGCCCCCTCTGCCCCCGGTGCGTTCCCCTTTAACGCCCCCTTCGCGGGTGCCCCCACCGC
CGCCCCCACCGCCATGACCCCGGCGTCGCTGACCCTGTCCACGGCGCTGCACCCCGAGCTCAAGA
AACAAATCACCATGCCGCTGATCTCGGTGCTCCCGCAGATGGCGCAGCCGCTGCCCAACTACCGC
ACCCAGACCGCCCAGCTCCTGGCCCGGGTGCTGTTCGTCGACCGCGTGGGCGACGGCCTTGTGTT
GGACGTGCGCCCCTACACCGAGTACGCCACCGCGCACCTCCGCGG
Found at i:15168 original size:15 final size:15
Alignment explanation
Indices: 15150--15189 Score: 62
Period size: 15 Copynumber: 2.7 Consensus size: 15
15140 GGGTGCTGGT
15150 GGTGCTGGTGGTGCC
1 GGTGCTGGTGGTGCC
* *
15165 GGTGCTGGCGGTGCT
1 GGTGCTGGTGGTGCC
15180 GGTGCTGGTG
1 GGTGCTGGTG
15190 CCGGTGCCCC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.00, C:0.17, G:0.55, T:0.28
Consensus pattern (15 bp):
GGTGCTGGTGGTGCC
Left flanking sequence: Indices 14650 -- 15149
CGGTGCTCCCGCAGATGGCGCAGCCGCTGCCCAACTACCGCACCCAGACCGCCCAGCTCCTGGCC
CGGGTGCTGTTCGTCGACCGCGTGGGCGACGGCCTTGTGTTGGACGTGCGCCCCTACACCGAGTA
CGCCACCGCGCACCTCCGCGGCGCCCTCAACCTCCTGTTGCCGCTGACCCTCCTCAAGCGCGCCA
ACTTCACCCTCCAGCGGTGCATCAACCTGCTCCCGCCCCCGGAGCGCCACCTCGTGACCCAGTTC
TTCGACGCCCCGGGGCCGCGCCGGGTGTGGGTCTACGACACCTCGCCGGCGCTGGCGCTGGTGTT
CCACGTGGTGCAGAAGCTCGTGGCGTCGCCGCTCTTTGGCGACGCCGACACCGTGGCGGTGTGTG
GCTTTGCCGACTACCCCGACCCGGCACAGGTGGAGACCGGCCCCGGCCCCGCGGCGCCGGCGCCC
CTGGGCGACCTCAACTTGCCCCCGCTCAAAATCGGGGGTGCTGGT
Right flanking sequence: Indices 15190 -- 15689
CCGGTGCCCCCGGGAGTGCGGGCGGTGCACCGGTGCGCGGGCACTGGACGCCGGTGCTCCTGAAC
TTTGCCTTGCCCAAGTGCCCCAAGCCCGGGTTCAAGATCCGCCACAACGAGGAGTTGTTGACGGC
GCTGGCCCCACACCACCTGCCGCTGACCCTCGAGAAGAACACCGCGCTGCTCTTCCGGTTGGCCA
AGTTGCCGCGCGACCGCTCGGTGCTCCCGCAGTGGATGCACCGGTTGGGCACCGGCACCGAGTGC
TTGAACACCGAGTTCGCCACGTTGGAGAAACGCGAGCAGAAGCGGTTGTTGATGGCGCTCCTGCT
CAACAACAACCACCAGTTGCTGCCGTTGGCGGGCGAGAGCCCGCCCACGATCTCGCTGGGGTTCG
AGTACGGGCACAAGAACCGCTACAAGGACATCTTTTTGTACGAGCACCTGCGGGTGAAGCTCGAG
GCCCCGGACGACTACATCAACGCGCTGTACGTGGCCCCGCCCGAG
Found at i:16587 original size:14 final size:14
Alignment explanation
Indices: 16552--16599 Score: 51
Period size: 14 Copynumber: 3.4 Consensus size: 14
16542 AACAATGCAC
* *
16552 AGAACAAAGCACAA
1 AGAACAAGGAACAA
*
16566 AGAACAAGGGACAA
1 AGAACAAGGAACAA
*
16580 AGAGCAAGGAACAA
1 AGAACAAGGAACAA
*
16594 ACAACA
1 AGAACA
16600 TGGGAACTGA
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
14 28 1.00
ACGTcount: A:0.60, C:0.19, G:0.21, T:0.00
Consensus pattern (14 bp):
AGAACAAGGAACAA
Left flanking sequence: Indices 16052 -- 16551
CACGGTGATGGCGCCCGACGAGCTCATTGCGGTGGTGGAGCTCAAGCACTACGTGTTGCTGCGGA
TGGCGCTTGGCGGGTGCGAGTACCCGCTGGTGATCCACTGCAGTGCCGGGTGCGGGCGCACCGGG
ACGTTGTGCACCATCGACACGGTGTTGCTGGTGCTCCGGGCCAACGGCAGTGCTGAGCTCGCTGA
GGACCCCGTGGCGGCGATCGTCGACCTGTTCCGGCGCCAGCGCATCCTGATGGTGCAGAACTTGC
GCCAGTACTACTTGGTGTACGACACGGTGTTGGACTGGGCCCAGGGGCTGCGGGGCCGGGACTTG
ACGCAGTTGGAGGTGGTGCAGGAGTTTATCGGATAGGTTATAGAAATGAGATGAACGAGAAGAAG
GAGGAGAAGGAGAAGAGTAGAAGAAGAACGCGAGTGTGGTGTAGTTCGTGGGTTCTTTGGTGGTC
TAGTGGGTTGTAGTGAATGGAAGCTGAGAATTGAGAACAATGCAC
Right flanking sequence: Indices 16600 -- 17099
TGGGAACTGAGGAGTGAGAAATGAGAAACGTTATAGGGTCAATCTGATCCGTATTACGTGCCTAA
CGTTCTCAACTATATTTGGATTGTATTTTGGCGACTACTTGAATCAATTGAGTCTAAAGAGATTG
CTTGTGAGCCAGGAAACGAACAATAAATTTACGAGATGAGAAGTTGAACAGGTAGTCAAAGGGTC
AGAATGTATTGGTATGAGTCTGAGCAACTACAATTGCTACACGATTTTTACAACTGTTTCGTAAT
AGTTTGATCTGTTCGTTAGTCCAGGGTTAAGCTTCGTGTGAGTAACCTTACTGCCTGAATTGACG
ATTAATAAATCCGTAATTAAATCAATGGTCAATTCATGATTGCAAAAACACTTAATTTTGTTCAC
GTTGTGAGACAATGCCTACCAGTCTTCTATTTTTGTTTTATTCTTTGTTTCGTCTATTTCTGTTT
TATCTGAGTATACTTCTATTTATTCTTAGATCGTTTCCAAGTTTT
Found at i:18094 original size:12 final size:12
Alignment explanation
Indices: 18077--18101 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
18067 GGTAACGGTG
18077 GGAGGCGGGGGA
1 GGAGGCGGGGGA
18089 GGAGGCGGGGGA
1 GGAGGCGGGGGA
18101 G
1 G
18102 AAAGAGGAGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.08, G:0.76, T:0.00
Consensus pattern (12 bp):
GGAGGCGGGGGA
Left flanking sequence: Indices 17577 -- 18076
GATCTATAACCTAAACATTAGCAGAAATCTTCTGCTTGATGGCAGCGGGGTTGGCACCAATGATC
TTGTCCACCTGCTGGCCGTCCTTGAAAAGCAAAATGGTGGGCATCGACGAGATCTCGTACTTCTG
AGCCAAAGGCCCCAACTCGTCCACGTCAACCTTGACAAACTTGGCCTGCGAGTACTCGTTGGAGA
ACTTGTCCAACATGGGGGCAATCATCTTGCAGGGGCCGCACCACGTGGCAAAGAAGTCGACAATG
ACGAGACCGGAGTGCTTCAACGCCTCCTCGAATTCCTGTTGGGTCTTGACCTGGGTAACCATTAT
TGCTAGTTTTGAGTGGGGCTGCTGCCAACTTATACCTTTTTTCTGGCTCGACCTCGCCGGCTTAC
TAACGCGTCACGTGGAGATCGAAGCAAACAGAACCCCGAGTCGGACGCAGCCGCACCGGGCAAAG
CGTTGCCAAATGGGGCTAATGGGGTACAGGTGACAGGTAACGGTG
Right flanking sequence: Indices 18102 -- 18601
AAAGAGGAGAAAAAAGAGGTGAGAGAGGAGGAGGGGAGTGAGCGGAGGTAGAGGAGGGGTAGTTG
AATCAGAACGAGGCGAGTCAGGCGAGTCAGGCGAGTTGAACGCAAAGGTAGGGTGGTGCGGTGCT
TGGGTTCACGTGTGTTCGAGTCACCGTGAATAAGCTTTCTGTGTGCCCGCGTCTTCGATAGAATT
CTTGTCGGTTAGTAATATAGCTTATTAATTTGTGGCTGCAAATTGGTTGCAGACTGCATGGTGAG
CATCCAAGGTTGTAGAGGGAAGTAACGTACTGGTTGGCAATTAGTGGTGGTTGAGCTGTCAATGG
CCAAGCCATTAGCTGAATGACAGTGAGATTATGTAACTACATCACTCTGTCTTTTCTGAACTTGA
CTACTCTTACCTACAAGTATCTAACCGCTATCAGTCTCGAGGTTCTCGCCAGTCTCCGTAGAAGG
TATTCCTTGCTTTGCCTGCTTCTTTCTGTTCGTCCATACTGTACC
Found at i:18191 original size:9 final size:9
Alignment explanation
Indices: 18177--18202 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
18167 AATCAGAACG
18177 AGGCGAGTC
1 AGGCGAGTC
18186 AGGCGAGTC
1 AGGCGAGTC
18195 AGGCGAGT
1 AGGCGAGT
18203 TGAACGCAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.23, C:0.19, G:0.46, T:0.12
Consensus pattern (9 bp):
AGGCGAGTC
Left flanking sequence: Indices 17677 -- 18176
GGTGGGCATCGACGAGATCTCGTACTTCTGAGCCAAAGGCCCCAACTCGTCCACGTCAACCTTGA
CAAACTTGGCCTGCGAGTACTCGTTGGAGAACTTGTCCAACATGGGGGCAATCATCTTGCAGGGG
CCGCACCACGTGGCAAAGAAGTCGACAATGACGAGACCGGAGTGCTTCAACGCCTCCTCGAATTC
CTGTTGGGTCTTGACCTGGGTAACCATTATTGCTAGTTTTGAGTGGGGCTGCTGCCAACTTATAC
CTTTTTTCTGGCTCGACCTCGCCGGCTTACTAACGCGTCACGTGGAGATCGAAGCAAACAGAACC
CCGAGTCGGACGCAGCCGCACCGGGCAAAGCGTTGCCAAATGGGGCTAATGGGGTACAGGTGACA
GGTAACGGTGGGAGGCGGGGGAGGAGGCGGGGGAGAAAGAGGAGAAAAAAGAGGTGAGAGAGGAG
GAGGGGAGTGAGCGGAGGTAGAGGAGGGGTAGTTGAATCAGAACG
Right flanking sequence: Indices 18203 -- 18702
TGAACGCAAAGGTAGGGTGGTGCGGTGCTTGGGTTCACGTGTGTTCGAGTCACCGTGAATAAGCT
TTCTGTGTGCCCGCGTCTTCGATAGAATTCTTGTCGGTTAGTAATATAGCTTATTAATTTGTGGC
TGCAAATTGGTTGCAGACTGCATGGTGAGCATCCAAGGTTGTAGAGGGAAGTAACGTACTGGTTG
GCAATTAGTGGTGGTTGAGCTGTCAATGGCCAAGCCATTAGCTGAATGACAGTGAGATTATGTAA
CTACATCACTCTGTCTTTTCTGAACTTGACTACTCTTACCTACAAGTATCTAACCGCTATCAGTC
TCGAGGTTCTCGCCAGTCTCCGTAGAAGGTATTCCTTGCTTTGCCTGCTTCTTTCTGTTCGTCCA
TACTGTACCACGATAAAGTCTACGTGGAGTGCCACTGTGTAGCACTACGGCCATAGTAGGGTATG
AACATGGATGGCCTGCGAGGTTTAAATGCAATTGGCTATTGAAAT
Found at i:22371 original size:16 final size:17
Alignment explanation
Indices: 22350--22402 Score: 56
Period size: 16 Copynumber: 3.1 Consensus size: 17
22340 TTCTGACCTA
22350 CCCTCCTCCATCCTC-T
1 CCCTCCTCCATCCTCTT
*
22366 CCCTCCTCTTCCTCCTCTT
1 CCCTCCTC--CATCCTCTT
*
22385 CCCTCCTCCCT-CTCTT
1 CCCTCCTCCATCCTCTT
22401 CC
1 CC
22403 TCTACATTTT
Statistics
Matches: 33, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
16 15 0.45
17 3 0.09
18 6 0.18
19 9 0.27
ACGTcount: A:0.02, C:0.62, G:0.00, T:0.36
Consensus pattern (17 bp):
CCCTCCTCCATCCTCTT
Left flanking sequence: Indices 21850 -- 22349
TGGATGCTATCAATTGTCTTTTACTAAGCAAATGACAATAGGATTGTAATTGAGATTCACCTGGG
ATGAAGCTACGAAGAACAATGGGGCCACCCAATCAATTGCTTGCCAATGCTTGGTTTGGGGTCTA
CGGGTCCACAGGTGGGTATCTCTCATCGTGGTTTGATACCCTAATTCGCACTATTGACAAAATTC
GAAATTGCCAGAAATATTCCAAACCGATAAGAAACTCTAATCCTAGACACAAACTTCTCTACATA
TAGCACAGATCCTTTCCATAGAGACCCATACCATCTCAGTCCCTTCCCCACACCTCACTTCCCCA
AACCACACAACCAACAAGTTAAGACCCACTAGCCAGAACATCTAGCCAAAATATCTAACCTCAGT
ACCTAGCCACACCTGAGCCACCACACCCACCTTCCCAACCACCATTACACCAATGCCCATCCCTT
TTCTATCCCATTCCCATCACCTTCCCATCACCATCTTCTGACCTA
Right flanking sequence: Indices 22403 -- 22902
TCTACATTTTTTTGCACCGACTCGCACCTCACAGCAAAAACTTCATCTCATACCCATCCACCATG
CCCTTCGACGAGTTTGACGAGTTTGACACCAACGACAACTGGGACGACACTGCCGGCGGCGACGA
CGCGCTCTTGGACTCGTGGGACGTCGACCTCGACGAGTTAGAGGCCAAGAAGAAGGCCGAGGAGG
AGGAAAAAGAGGCCAAGAAGGCCGAGCTCAAGCGCAAGCAGGAGGAACAGAAACTCAAGAAGAAG
GGCCTTTTGAAGGGCAACCAGACGCTAGCCGAGTTGGACGAGCTCGACGAGGACACCCGCAAGGA
GCTCTTGCGCCAGGCCGAGCTCCTGGCCGACTTGAACAACGCCGCCGACTTGTTCGGAGGGTTGG
GGGTGGCTGAGGACATCAACGCCCACCCGAGAGACCGGATCACCAAGGACCAGATCGCGGCCGCC
CAGCTGAAACGCTCGCGTGCGTTGACCAGGGACACCCCCCTCGAG
Found at i:23272 original size:15 final size:15
Alignment explanation
Indices: 23234--23274 Score: 55
Period size: 15 Copynumber: 2.7 Consensus size: 15
23224 AAGGACGACT
23234 ACGACGACTTTGACG
1 ACGACGACTTTGACG
** *
23249 ACGGGGACTTTGGCG
1 ACGACGACTTTGACG
23264 ACGACGACTTT
1 ACGACGACTTT
23275 ATGTAGGCGG
Statistics
Matches: 21, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.22, C:0.24, G:0.32, T:0.22
Consensus pattern (15 bp):
ACGACGACTTTGACG
Left flanking sequence: Indices 22734 -- 23233
GCGCCAGGCCGAGCTCCTGGCCGACTTGAACAACGCCGCCGACTTGTTCGGAGGGTTGGGGGTGG
CTGAGGACATCAACGCCCACCCGAGAGACCGGATCACCAAGGACCAGATCGCGGCCGCCCAGCTG
AAACGCTCGCGTGCGTTGACCAGGGACACCCCCCTCGAGGAGCACCCGTTGTTCTTGCCGCTGAA
CAAGGCGGAGTTCGAGAAGCTCCGCAAGACGTTGACGGCCACGCTTGTGCAGATGCACGAGGACC
AGCCCACGCTCTACGCGCTGCTGCTTGCCATCGACCTCATCCGCGACATCGCTGCCCCCTTGAAC
GTCGAGCAGACCCGCAAGTTGACGCTGACGTTGAACGTGCAGTTGAAGGAGAAGGAGCGGGCCGA
GCGCCAGGCGCGGTTGAAGAAGACTGGTGGCACTGCTACTGGGGGTGCTGGCAAGAAGAAGGCCA
AGCCTGCGGCCATGCCCAACGTGGGGTCGTTCAAGAAGGACGACT
Right flanking sequence: Indices 23275 -- 23774
ATGTAGGCGGCAATGGATAGATTAATGCGAGGGGGTGTAGGTGACGCAATGGAAAGATGGGAGTG
GTGTGAGAGTGACTGCAATGGATAGAATAATGCGAGGAGTGGGTGAGAGTAGGTTTACAAGGGGT
ATGGGAATAGGGTCTGTTTAGGGTCTGTCTACTGAGTTTGAGCGCTGAGCTTATAGTTTCCTGCG
TCTATTAGAGACTTTTGAATCCAACGCTTTTGACTAAGATCTAGACCACCGAAAAAATGGTGGAG
ACTGTTTAGGTTCATACTGTGTTGGTTCAGAGTGGGTAGGTTCAGACTGTGTTGGTTCAGAGTGG
GTAGATCCAAAGTATAGGATTTTTGGTTGTTCAAGCACAGATGATATCCAGTACCTGAGAGATAT
ATAAGGCTCTTATCAGAGTAATTGATTTCGAACTGACTTTTCATCCTGCTATCTTGATGACGTTC
AATAGCTGTGCTAGTTCTCTGGTCTTCTCTGCTACGTTACACTAC
Found at i:23561 original size:15 final size:15
Alignment explanation
Indices: 23533--23595 Score: 74
Period size: 15 Copynumber: 4.2 Consensus size: 15
23523 AAAATGGTGG
23533 AGACTGT-TTAGGTTC
1 AGACTGTGTT-GGTTC
*
23548 ATACTGTGTTGGTTC
1 AGACTGTGTTGGTTC
* * *
23563 AGAGTGGGTAGGTTC
1 AGACTGTGTTGGTTC
23578 AGACTGTGTTGGTTC
1 AGACTGTGTTGGTTC
23593 AGA
1 AGA
23596 GTGGGTAGAT
Statistics
Matches: 39, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
15 37 0.95
16 2 0.05
ACGTcount: A:0.19, C:0.11, G:0.33, T:0.37
Consensus pattern (15 bp):
AGACTGTGTTGGTTC
Left flanking sequence: Indices 23033 -- 23532
TCCGCGACATCGCTGCCCCCTTGAACGTCGAGCAGACCCGCAAGTTGACGCTGACGTTGAACGTG
CAGTTGAAGGAGAAGGAGCGGGCCGAGCGCCAGGCGCGGTTGAAGAAGACTGGTGGCACTGCTAC
TGGGGGTGCTGGCAAGAAGAAGGCCAAGCCTGCGGCCATGCCCAACGTGGGGTCGTTCAAGAAGG
ACGACTACGACGACTTTGACGACGGGGACTTTGGCGACGACGACTTTATGTAGGCGGCAATGGAT
AGATTAATGCGAGGGGGTGTAGGTGACGCAATGGAAAGATGGGAGTGGTGTGAGAGTGACTGCAA
TGGATAGAATAATGCGAGGAGTGGGTGAGAGTAGGTTTACAAGGGGTATGGGAATAGGGTCTGTT
TAGGGTCTGTCTACTGAGTTTGAGCGCTGAGCTTATAGTTTCCTGCGTCTATTAGAGACTTTTGA
ATCCAACGCTTTTGACTAAGATCTAGACCACCGAAAAAATGGTGG
Right flanking sequence: Indices 23596 -- 24095
GTGGGTAGATCCAAAGTATAGGATTTTTGGTTGTTCAAGCACAGATGATATCCAGTACCTGAGAG
ATATATAAGGCTCTTATCAGAGTAATTGATTTCGAACTGACTTTTCATCCTGCTATCTTGATGAC
GTTCAATAGCTGTGCTAGTTCTCTGGTCTTCTCTGCTACGTTACACTACATACGGACCAACCTCT
TTTAGGGCTCATACCTAATGCCTCCTAACTTGGCCATATCGCTAATAAAGAATACAGAATGAGTC
TCGTGGGGACAGCGGCGTGTACCGCTGGAAAGCCACCTGTCGTACAAGCTCGGCCTCCAACTCTC
GCTCGCGGGTTCTCACCACAGAAAGCTCACTCTGTAGCTGGACGAGCTTCTGAGCCAACTCGTCG
CGCTGGCGCTCATACACTACGAGCGAGCCCCGGACAAGGGCCAACTCGAGCGCGGTGTTGGCCTC
GATCAGTCGCGCCGTCGTAAGCAAAAGCTGTAGCCCCTCTGTCTC
Found at i:23577 original size:30 final size:30
Alignment explanation
Indices: 23541--23603 Score: 117
Period size: 30 Copynumber: 2.1 Consensus size: 30
23531 GGAGACTGTT
*
23541 TAGGTTCATACTGTGTTGGTTCAGAGTGGG
1 TAGGTTCAGACTGTGTTGGTTCAGAGTGGG
23571 TAGGTTCAGACTGTGTTGGTTCAGAGTGGG
1 TAGGTTCAGACTGTGTTGGTTCAGAGTGGG
23601 TAG
1 TAG
23604 ATCCAAAGTA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.17, C:0.10, G:0.38, T:0.35
Consensus pattern (30 bp):
TAGGTTCAGACTGTGTTGGTTCAGAGTGGG
Left flanking sequence: Indices 23041 -- 23540
ATCGCTGCCCCCTTGAACGTCGAGCAGACCCGCAAGTTGACGCTGACGTTGAACGTGCAGTTGAA
GGAGAAGGAGCGGGCCGAGCGCCAGGCGCGGTTGAAGAAGACTGGTGGCACTGCTACTGGGGGTG
CTGGCAAGAAGAAGGCCAAGCCTGCGGCCATGCCCAACGTGGGGTCGTTCAAGAAGGACGACTAC
GACGACTTTGACGACGGGGACTTTGGCGACGACGACTTTATGTAGGCGGCAATGGATAGATTAAT
GCGAGGGGGTGTAGGTGACGCAATGGAAAGATGGGAGTGGTGTGAGAGTGACTGCAATGGATAGA
ATAATGCGAGGAGTGGGTGAGAGTAGGTTTACAAGGGGTATGGGAATAGGGTCTGTTTAGGGTCT
GTCTACTGAGTTTGAGCGCTGAGCTTATAGTTTCCTGCGTCTATTAGAGACTTTTGAATCCAACG
CTTTTGACTAAGATCTAGACCACCGAAAAAATGGTGGAGACTGTT
Right flanking sequence: Indices 23604 -- 24103
ATCCAAAGTATAGGATTTTTGGTTGTTCAAGCACAGATGATATCCAGTACCTGAGAGATATATAA
GGCTCTTATCAGAGTAATTGATTTCGAACTGACTTTTCATCCTGCTATCTTGATGACGTTCAATA
GCTGTGCTAGTTCTCTGGTCTTCTCTGCTACGTTACACTACATACGGACCAACCTCTTTTAGGGC
TCATACCTAATGCCTCCTAACTTGGCCATATCGCTAATAAAGAATACAGAATGAGTCTCGTGGGG
ACAGCGGCGTGTACCGCTGGAAAGCCACCTGTCGTACAAGCTCGGCCTCCAACTCTCGCTCGCGG
GTTCTCACCACAGAAAGCTCACTCTGTAGCTGGACGAGCTTCTGAGCCAACTCGTCGCGCTGGCG
CTCATACACTACGAGCGAGCCCCGGACAAGGGCCAACTCGAGCGCGGTGTTGGCCTCGATCAGTC
GCGCCGTCGTAAGCAAAAGCTGTAGCCCCTCTGTCTCCCGCTTGG
Found at i:24943 original size:15 final size:15
Alignment explanation
Indices: 24925--24958 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
24915 CAGTCCCTCA
24925 TCTTCCAGCCCCACG
1 TCTTCCAGCCCCACG
* *
24940 TCTTCTAGCCCCTCG
1 TCTTCCAGCCCCACG
24955 TCTT
1 TCTT
24959 TTCCACTCCA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.09, C:0.47, G:0.12, T:0.32
Consensus pattern (15 bp):
TCTTCCAGCCCCACG
Left flanking sequence: Indices 24425 -- 24924
GCTCCTTCTGCGGCAGCGAGCTCACGAGACAGCACCCAACGCCCGGGTCTGAGAAGTGATCGAAG
CCAACACGCGTAGACTCGGCTAAAAACAGGTAGCACTCGGGCTCAATAGCAGGCAGCGGGGGTGT
GAGACCGCCTGGGCCACCCAAGATGTTCTGTGTCCAGAGCGGGGGGTGGTCGATGGACTTGCGTC
GCGTCCTGTCACCAAAGCTCTGGCCAAAAATCCGACTGAGCCCGTCGTTGAACGAGAGCCCGCGG
GAGCGGGTGCGGTGCTGCTTTGCCAACGGGCGGGAGCGGGTGTTGATTCGACTGGAGGGTTTTAA
AACAGCCATTCCTTTTATTAAACGCGTTACAGGGCTGGGCGGTATAAGCTTGAGCGCGTTAAGAA
TTGTCTACAAAATTGCTAGACAACCCCAGAGAAGCCCAAACCACAGTTTGACCACTTAAAACAAA
CTACAAACCCCTCAATGCCACCATCCAATCCCCCCCAGTCCCTCA
Right flanking sequence: Indices 24959 -- 25458
TTCCACTCCACGTCCTTCCCACCACGGTTGCAAATCCTGCATCTGTGTGCGAACAACCAAAGACC
CCACCACCCACCACCCACCCAGCCCCCCAAACCCACCCACCACGATGCCCGACGACGTAGTCCTG
CCGGGGCTCCCCTCGCTCCACACACTCACCATCGCAGACACCCTGAAACTGGGGTTTGGCTACAA
CCCCAGCGTGGGGCCGGCCCTGAACGCCATCACCCCCGAGACGTCGCAGGTGCTCATGAGCAAGA
AGGCAGTGTCGTTGACGCCCACCTCGCACGCGCTGATCTACGACCGCAACGTCACCACGAAAAAA
TCCACCGAGATCGCGCTCTCGCTGGTGCTGTTCCTCTTCTGTGAGGTGGTCAACTGGCTGCTCAA
GAACCTGAAGGGGATCCAGGACCTCGAGACCCGGCTCAACGGGCTTGGCTACCTGATTGGCCAGC
GTTTTTTGGAGGTGGTGAAGCTCCGGGAGGGGGTCAAGACCGCCC
Found at i:25988 original size:20 final size:20
Alignment explanation
Indices: 25963--26005 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
25953 ATAGCTTTCA
*
25963 TAGTGTTTGGGCTTTAAAAC
1 TAGTGTTTGAGCTTTAAAAC
* *
25983 TAGTGTTTTAGCTTTCAAAC
1 TAGTGTTTGAGCTTTAAAAC
26003 TAG
1 TAG
26006 GATTTGGTAG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.26, C:0.12, G:0.21, T:0.42
Consensus pattern (20 bp):
TAGTGTTTGAGCTTTAAAAC
Left flanking sequence: Indices 25463 -- 25962
CGAGATGAGGATCCTCGAGATTCTCCAGTTCATCCACGGCCCGCTCTGGAAGACGGTGTTTGGCA
AGACCGCCACCGACCTCGAGAAGCTGCAGGACATGGCTGACGAGTACATGATCATCGACAACGAG
CCGGTGACCAACAAGTATATTAGTATCCCCAAGGACTACGGCAACTTGAACTGCGGGGCGTTTAT
AGCCGGGATCATCGAGGGGGCGTTGGACAGCGCGGCGTTCTACGCCAATGTCACCGCCCACTCGG
TGCCCGTGGACCACGCACCGTTGCGAACGGTGTTTTTGATCAAGTTTAAGGAGGCGGTGTTGACA
CGCGAGACGTTGTACCAGAGTTGATAGCAGATAGCATAGGCCGGGAGCCAATAAAGGAACAATAG
TAGAGGGTAAAGTGTAGATGTGAGAGAAGGGGTTCTGATGGGAATATGAGAATAGTAGTGTGTTT
CTTAGGGAATTGGAGTGGACGGAAGGTATAGCTTGATAGCTTTCA
Right flanking sequence: Indices 26006 -- 26505
GATTTGGTAGATCGGTGGCATACAGTGGTAGATCGGACCTCCCCCAACACGACCTTGGCACCACT
ACACACAGCTTCACAAGCAGCATTCCAATCCACAGTGACTTCGCCCTACATTTCCCCCATTCCGT
GTCATCCCACGCGTCTCGCTTACCGGAGTTATTCGCTAACCTGCAATTCTCGTAACCTGCAAGAT
CGCAGTGGGACGGCTGCAATGTTGACAATGCCCACCATAAACCCATCAAAACAAATAAACAAACC
AAACCAAACCAAACTCAAACACGCGAATACACACTCCCCCTCCATCGACCTCCATCCACCCACAC
TCGTCCTTCCATCTTCCCGCCCTTCCACCTTCCGCCCACTGACATCACCAGTCGCACTGAAAAAT
TCCCCACTGCACCACCACCAGAGACACCATGGGGATCACTATCCGGCAGGCAACGATCGAAGACA
TCCAGGCGATGCAGAACGCCAACCTCCACAACCTCCCCGAGAACT
Found at i:26367 original size:15 final size:16
Alignment explanation
Indices: 26335--26367 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
26325 CCACACTCGT
*
26335 CCTTCCATCTTCCCGC
1 CCTTCCACCTTCCCGC
26351 CCTTCCACCTT-CCGC
1 CCTTCCACCTTCCCGC
26366 CC
1 CC
26368 ACTGACATCA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 6 0.38
16 10 0.62
ACGTcount: A:0.06, C:0.61, G:0.06, T:0.27
Consensus pattern (16 bp):
CCTTCCACCTTCCCGC
Left flanking sequence: Indices 25835 -- 26334
CCAATAAAGGAACAATAGTAGAGGGTAAAGTGTAGATGTGAGAGAAGGGGTTCTGATGGGAATAT
GAGAATAGTAGTGTGTTTCTTAGGGAATTGGAGTGGACGGAAGGTATAGCTTGATAGCTTTCATA
GTGTTTGGGCTTTAAAACTAGTGTTTTAGCTTTCAAACTAGGATTTGGTAGATCGGTGGCATACA
GTGGTAGATCGGACCTCCCCCAACACGACCTTGGCACCACTACACACAGCTTCACAAGCAGCATT
CCAATCCACAGTGACTTCGCCCTACATTTCCCCCATTCCGTGTCATCCCACGCGTCTCGCTTACC
GGAGTTATTCGCTAACCTGCAATTCTCGTAACCTGCAAGATCGCAGTGGGACGGCTGCAATGTTG
ACAATGCCCACCATAAACCCATCAAAACAAATAAACAAACCAAACCAAACCAAACTCAAACACGC
GAATACACACTCCCCCTCCATCGACCTCCATCCACCCACACTCGT
Right flanking sequence: Indices 26368 -- 26867
ACTGACATCACCAGTCGCACTGAAAAATTCCCCACTGCACCACCACCAGAGACACCATGGGGATC
ACTATCCGGCAGGCAACGATCGAAGACATCCAGGCGATGCAGAACGCCAACCTCCACAACCTCCC
CGAGAACTACCAGCTCAAATACTACATGTACCACATACTCCTGTGGCCCCAGGCCCTGTTTGTCG
CCACGACCACCGACGACGTCGAGGACCTCGACGAGTCTGAGGGGTTGCCAGTGCCGTTGGCCGAT
CCCAAGGGGGACCCCGCGTACCTTGGACGCGAAAAATTGGTGGGCTACGTGCTTGGCAAGATGGA
GGACGACCCCGATGCCGACGACAAGACCCCCCACGGGCACATCACGTCGTTGTCGGTGATGAGAA
CGTACAGACGGATGGGGCTTGCCGAGAAGTTGATGCGCCAGCTGTTGTACGCCATGTGCGAGCTG
TTTGATGCCAAGTACGTGAGTTTGCACGTGCGCAAGCTGAACAGG
Found at i:27176 original size:14 final size:14
Alignment explanation
Indices: 27161--27227 Score: 80
Period size: 14 Copynumber: 4.8 Consensus size: 14
27151 TTGAGAGGTG
* **
27161 TGGGTGTTGTGGTG
1 TGGGTGTTGAGGCA
27175 TGGGTGTTGAGGCA
1 TGGGTGTTGAGGCA
27189 TGGGTGTTGAGGCA
1 TGGGTGTTGAGGCA
* *
27203 TGGGTGTTGAAGAA
1 TGGGTGTTGAGGCA
*
27217 TGGGAGTTGAG
1 TGGGTGTTGAG
27228 AAGTAGGTTT
Statistics
Matches: 46, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
14 46 1.00
ACGTcount: A:0.15, C:0.03, G:0.51, T:0.31
Consensus pattern (14 bp):
TGGGTGTTGAGGCA
Left flanking sequence: Indices 26661 -- 27160
AAATTGGTGGGCTACGTGCTTGGCAAGATGGAGGACGACCCCGATGCCGACGACAAGACCCCCCA
CGGGCACATCACGTCGTTGTCGGTGATGAGAACGTACAGACGGATGGGGCTTGCCGAGAAGTTGA
TGCGCCAGCTGTTGTACGCCATGTGCGAGCTGTTTGATGCCAAGTACGTGAGTTTGCACGTGCGC
AAGCTGAACAGGGCTGCCCTCCATTTGTACCGGGACCTGCTCAAGTTTGACGTGACTCTGATTGA
GAAGGGGTACTACCAGGACGGGGAGGACGCGTACGCGATGCGGCTTGACCTTGTGTTGGACGATT
TGTTGCCGCTGAAGGCCCAGGGCGGCGAGGTGGACGACTTGACGTCGGACCTCTTGGCGGACTTG
TAATGCATAGGGTGGGTGGTGTCTAGGTCAGTGCGACTGGACACGTATATAGGCCGGAAGGCCCC
AATAAACGATATAGAGAGGTGGGTGGGTGTTGGTGTTGAGAGGTG
Right flanking sequence: Indices 27228 -- 27727
AAGTAGGTTTGTTGAAGGTCGAAACGAGAAACCACGAGGAAGTGTTTATGGCGTGACCTGGGACT
AACTGTTCTTCAATCCATTTGCTATTTGTTTTATCAATCAGGACTGATGGCCCCTGGGAAGAGGG
GAATTGAAAATTATGCATGGATCCACTATCGAATACCCCTTGAAAGGTGATAATACTACTGTGAC
GTTCTTGTTGACGCTGAAAAAAAATTAGTCGAAGCCTTAGCCCGTGCCTTAGACCGTGCCTTTGC
CCAAGCCTTAGCCCAAACCTTAGCCTAAGCTTCAAAGAGCCTTACCCGACCTACACTCCAAAACA
ATCAATTACCTATTAACTTACCAGATCTGCGCCTGTTCAAAGTAGTCGACCCGGTGCTTGGACGA
GTCAAAGTGCTGGGCCACAGCACGGCGGGTGGAATCCACCAAGGTGCCCGCACCACAAGTGGTGA
AAGCAATGGTCCCCTCGGACTCGGCAATCTCCAGTGCGACCAACG
Found at i:27502 original size:12 final size:12
Alignment explanation
Indices: 27454--27517 Score: 56
Period size: 12 Copynumber: 5.3 Consensus size: 12
27444 AAATTAGTCG
27454 AAGCCTTAGCCC
1 AAGCCTTAGCCC
** *
27466 GTGCCTTAGACC
1 AAGCCTTAGCCC
** *
27478 GTGCCTTTGCCC
1 AAGCCTTAGCCC
27490 AAGCCTTAGCCC
1 AAGCCTTAGCCC
* *
27502 AAACCTTAGCCT
1 AAGCCTTAGCCC
27514 AAGC
1 AAGC
27518 TTCAAAGAGC
Statistics
Matches: 41, Mismatches: 11, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
12 41 1.00
ACGTcount: A:0.22, C:0.38, G:0.19, T:0.22
Consensus pattern (12 bp):
AAGCCTTAGCCC
Left flanking sequence: Indices 26954 -- 27453
CGCGATGCGGCTTGACCTTGTGTTGGACGATTTGTTGCCGCTGAAGGCCCAGGGCGGCGAGGTGG
ACGACTTGACGTCGGACCTCTTGGCGGACTTGTAATGCATAGGGTGGGTGGTGTCTAGGTCAGTG
CGACTGGACACGTATATAGGCCGGAAGGCCCCAATAAACGATATAGAGAGGTGGGTGGGTGTTGG
TGTTGAGAGGTGTGGGTGTTGTGGTGTGGGTGTTGAGGCATGGGTGTTGAGGCATGGGTGTTGAA
GAATGGGAGTTGAGAAGTAGGTTTGTTGAAGGTCGAAACGAGAAACCACGAGGAAGTGTTTATGG
CGTGACCTGGGACTAACTGTTCTTCAATCCATTTGCTATTTGTTTTATCAATCAGGACTGATGGC
CCCTGGGAAGAGGGGAATTGAAAATTATGCATGGATCCACTATCGAATACCCCTTGAAAGGTGAT
AATACTACTGTGACGTTCTTGTTGACGCTGAAAAAAAATTAGTCG
Right flanking sequence: Indices 27518 -- 28017
TTCAAAGAGCCTTACCCGACCTACACTCCAAAACAATCAATTACCTATTAACTTACCAGATCTGC
GCCTGTTCAAAGTAGTCGACCCGGTGCTTGGACGAGTCAAAGTGCTGGGCCACAGCACGGCGGGT
GGAATCCACCAAGGTGCCCGCACCACAAGTGGTGAAAGCAATGGTCCCCTCGGACTCGGCAATCT
CCAGTGCGACCAACGCGTCACACGAGGGACGGCCCTCGCGGAAATCTATGTGGGTGAATTTCTGC
TTGAGTGCCTCGAGGTAGTCCACAGTCTTTTCCTCATCGGACTTCTTTTCGTCGGTGGAGGAAGT
CTCCAGAGCGATCGGGGTCACGAGCTCGACGGGCTGACTGACAAACACCACGGTGTCGAGCTTGT
CGTTGTTGAACTTCTGGAGCTCGGGGTAGAACCACTCGATGGCCTGGTAGTTGCGGATCACCCAG
TAGAACTTGACTTTGGTCTTGCTCGCCTTGGAGATGATGTCACGG
Found at i:37291 original size:24 final size:25
Alignment explanation
Indices: 37247--37294 Score: 71
Period size: 24 Copynumber: 1.9 Consensus size: 25
37237 GCAGTCAGAT
37247 CACCAAGAACGATCACCAAGAAACAC
1 CACCAAGAAC-ATCACCAAGAAACAC
*
37273 CACCAAGAA-ATCACTAAGAAAC
1 CACCAAGAACATCACCAAGAAAC
37295 GATCTCCAAG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 12 0.57
26 9 0.43
ACGTcount: A:0.52, C:0.31, G:0.10, T:0.06
Consensus pattern (25 bp):
CACCAAGAACATCACCAAGAAACAC
Left flanking sequence: Indices 36747 -- 37246
GAATTAAATCAGCACAATTCTCACGAATTGTGGGTGCAAATTGAACCGTTATGCGTCAATGCATG
CGAAGGCTCATTGGTGTCTGAATTGATGAATGTGTGGTAGGTGTGTTGGGACGGCTCAAACCAAC
TTGTAGTAGACAGGGTCCTTCTGTGACTTGCGCAGATGGTGGAAAAGCATCGCTAACCGGCAAAA
GTAGCCCAAAAGCATTATCAAGAACGTCTGCACGGCGACCCTGGCTAAGGGTCTTCCCGTCACTT
TGTGGGTGACAAAGATACCGCTGGACGCAAGTACCGAAAGATAGGCCAACACCAGTAATCGCATT
TCCAAAGGCGTCACCCGGTTGGCCATATATATACGTTCAGTGAGAACACGTCAACGGGCTATCAG
CTTACACGACAAGCCCTGTGACGGTGACATAGATTTCTTGAGTGCATCGATAGTGGTCTGATAAT
AGTCACACTGCTTGGTAGCTGCAAATTTCAAGAAAGCAGTCAGAT
Right flanking sequence: Indices 37295 -- 37794
GATCTCCAAGAAACCGACGGCATCAGGCTATTACGTTCTCTGCCAAGATGCTGACTCCTTAGCAG
ACTCGTTGCTTTGCTCACCGTGAATCGAGCCAACTTCTACGTGTTCACTGATCAGCTGAGCGTTT
CCGTTCTCGGTCAACCAGAGGTGACCAGGTAGGAAAACGCCCCGTCAGTCTACCCTTCTAACTGT
AAGTAACTGGGGGTGTCCCATCTATTCTATGCTACTGTAACCCGTGCGAGATGGTGTCCCTTCTA
TTCTATGCTACTGTAACCCGTGCGAGATCGAGTTACGGGGGGTGTTTTGCACGCTGGCACTGCGG
GAGCGGTTCAAGGTGTTAAGCGAGTGGAGACTCGACACCGAGTTGCGGTGGGAGTACGGCGGGCG
CTGCGGCGACCACGTGGCCGGCTCGTCCTCGTTGATCGACGGCGTGGAGTCGTTGGACCCGAGCC
AGATGCCCAGCACCCGCTTGGCAAGCAGCTCCGCCGTGGCGGCCT
Found at i:37307 original size:14 final size:14
Alignment explanation
Indices: 37244--37308 Score: 68
Period size: 13 Copynumber: 5.0 Consensus size: 14
37234 AAAGCAGTCA
37244 GATCACCAAG-AAC
1 GATCACCAAGAAAC
37257 GATCACCAAGAAAC
1 GATCACCAAGAAAC
*
37271 -ACCACCAAG-AA-
1 GATCACCAAGAAAC
*
37282 -ATCACTAAGAAAC
1 GATCACCAAGAAAC
*
37295 GATCTCCAAGAAAC
1 GATCACCAAGAAAC
37309 CGACGGCATC
Statistics
Matches: 43, Mismatches: 5, Indels: 7
0.78 0.09 0.13
Matches are distributed among these distances:
11 7 0.16
12 4 0.09
13 18 0.42
14 14 0.33
ACGTcount: A:0.49, C:0.29, G:0.12, T:0.09
Consensus pattern (14 bp):
GATCACCAAGAAAC
Left flanking sequence: Indices 36744 -- 37243
TTTGAATTAAATCAGCACAATTCTCACGAATTGTGGGTGCAAATTGAACCGTTATGCGTCAATGC
ATGCGAAGGCTCATTGGTGTCTGAATTGATGAATGTGTGGTAGGTGTGTTGGGACGGCTCAAACC
AACTTGTAGTAGACAGGGTCCTTCTGTGACTTGCGCAGATGGTGGAAAAGCATCGCTAACCGGCA
AAAGTAGCCCAAAAGCATTATCAAGAACGTCTGCACGGCGACCCTGGCTAAGGGTCTTCCCGTCA
CTTTGTGGGTGACAAAGATACCGCTGGACGCAAGTACCGAAAGATAGGCCAACACCAGTAATCGC
ATTTCCAAAGGCGTCACCCGGTTGGCCATATATATACGTTCAGTGAGAACACGTCAACGGGCTAT
CAGCTTACACGACAAGCCCTGTGACGGTGACATAGATTTCTTGAGTGCATCGATAGTGGTCTGAT
AATAGTCACACTGCTTGGTAGCTGCAAATTTCAAGAAAGCAGTCA
Right flanking sequence: Indices 37309 -- 37808
CGACGGCATCAGGCTATTACGTTCTCTGCCAAGATGCTGACTCCTTAGCAGACTCGTTGCTTTGC
TCACCGTGAATCGAGCCAACTTCTACGTGTTCACTGATCAGCTGAGCGTTTCCGTTCTCGGTCAA
CCAGAGGTGACCAGGTAGGAAAACGCCCCGTCAGTCTACCCTTCTAACTGTAAGTAACTGGGGGT
GTCCCATCTATTCTATGCTACTGTAACCCGTGCGAGATGGTGTCCCTTCTATTCTATGCTACTGT
AACCCGTGCGAGATCGAGTTACGGGGGGTGTTTTGCACGCTGGCACTGCGGGAGCGGTTCAAGGT
GTTAAGCGAGTGGAGACTCGACACCGAGTTGCGGTGGGAGTACGGCGGGCGCTGCGGCGACCACG
TGGCCGGCTCGTCCTCGTTGATCGACGGCGTGGAGTCGTTGGACCCGAGCCAGATGCCCAGCACC
CGCTTGGCAAGCAGCTCCGCCGTGGCGGCCTGGGTGGTGGCCGAG
Found at i:37548 original size:41 final size:41
Alignment explanation
Indices: 37501--37582 Score: 155
Period size: 41 Copynumber: 2.0 Consensus size: 41
37491 AGTAACTGGG
37501 GGTGTCCCATCTATTCTATGCTACTGTAACCCGTGCGAGAT
1 GGTGTCCCATCTATTCTATGCTACTGTAACCCGTGCGAGAT
*
37542 GGTGTCCCTTCTATTCTATGCTACTGTAACCCGTGCGAGAT
1 GGTGTCCCATCTATTCTATGCTACTGTAACCCGTGCGAGAT
37583 CGAGTTACGG
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 40 1.00
ACGTcount: A:0.18, C:0.27, G:0.22, T:0.33
Consensus pattern (41 bp):
GGTGTCCCATCTATTCTATGCTACTGTAACCCGTGCGAGAT
Left flanking sequence: Indices 37001 -- 37500
TCACTTTGTGGGTGACAAAGATACCGCTGGACGCAAGTACCGAAAGATAGGCCAACACCAGTAAT
CGCATTTCCAAAGGCGTCACCCGGTTGGCCATATATATACGTTCAGTGAGAACACGTCAACGGGC
TATCAGCTTACACGACAAGCCCTGTGACGGTGACATAGATTTCTTGAGTGCATCGATAGTGGTCT
GATAATAGTCACACTGCTTGGTAGCTGCAAATTTCAAGAAAGCAGTCAGATCACCAAGAACGATC
ACCAAGAAACACCACCAAGAAATCACTAAGAAACGATCTCCAAGAAACCGACGGCATCAGGCTAT
TACGTTCTCTGCCAAGATGCTGACTCCTTAGCAGACTCGTTGCTTTGCTCACCGTGAATCGAGCC
AACTTCTACGTGTTCACTGATCAGCTGAGCGTTTCCGTTCTCGGTCAACCAGAGGTGACCAGGTA
GGAAAACGCCCCGTCAGTCTACCCTTCTAACTGTAAGTAACTGGG
Right flanking sequence: Indices 37583 -- 38082
CGAGTTACGGGGGGTGTTTTGCACGCTGGCACTGCGGGAGCGGTTCAAGGTGTTAAGCGAGTGGA
GACTCGACACCGAGTTGCGGTGGGAGTACGGCGGGCGCTGCGGCGACCACGTGGCCGGCTCGTCC
TCGTTGATCGACGGCGTGGAGTCGTTGGACCCGAGCCAGATGCCCAGCACCCGCTTGGCAAGCAG
CTCCGCCGTGGCGGCCTGGGTGGTGGCCGAGCGGGTGATGGGGTTGTAGGACGCGGCCAGCGCCG
TCATCGCCAGCGCCGTGGCCAGCGCCAACGACCCGAGGTTCTTCAAGAACCCCAGGGTCTCCACC
GTGGGCAACGGGAAAAGCGTAATGGTGGTGGGTGCCCAGGGGTTGGCACTGGTGGCCAGCCGGGC
CAAGTACTCCACCACCAGCTCCAGCACTGCCAGCTCGGGCTTGTCGTTGCCCCAGAGGCCCCGCC
AGCCCAGGGTGATCTTGGCCACCAGCTGGTTGAGGTTCTTGATGA
Found at i:39102 original size:18 final size:18
Alignment explanation
Indices: 39076--39115 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
39066 GGCACGTGGG
* *
39076 TGGGTGCCAGCGGTTGGT
1 TGGGAGCCAGCGGTTGGC
39094 TGGGAGCCAGCGGTTGGC
1 TGGGAGCCAGCGGTTGGC
39112 TGGG
1 TGGG
39116 TGGTTGGTTA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.07, C:0.17, G:0.53, T:0.23
Consensus pattern (18 bp):
TGGGAGCCAGCGGTTGGC
Left flanking sequence: Indices 38576 -- 39075
CTCCAGCGGCGGCTCCAGCTGGAACGACGCCTCGGCCGAGAGCCGGAGCAACGGGTCCGGCAGCG
GCTCGCGGTCGTCGGGCTCGTGGTGGCGCTCGACGGCCACCCGGCGGTCGCTCTGGGCGAGGGCT
GGGCCCAAGTGGCGCCACACCAGCTCGTTTCTGAGCACGGCGAGGGTCACCATCCGCGACGGCTC
GGGATACTTGACCACGGTGGCCACTAACGCCCTCACCACGAGCGCTACGAACCGGGGATAGTCGC
TGTGGATCGCCATGAGCTCGGGCAGCGCGTACGCCCGGATCACCTGGTGGAGGGCTGCTGCCAGC
GGGTACAGGAGCCCTCCGCGGGCGTTGCCGTTCAGCAACCGCTTGTGGCGGTCCAGCAGCTGCGG
GTAGAGCTCGCTGGGCTCGGGCGACACCCCGGAGCTGAGGTTGTAGACGAGCTCGAAGAGCGCGG
GGAGCAACGAGGCCACCACCTGGGAGCTGGTGGTGGGCACGTGGG
Right flanking sequence: Indices 39116 -- 39615
TGGTTGGTTAGCTGGGTGGCTCTGTCCGTAGCCTGCCAGCCCGGCTCCAAACGCGGGAGCGAGCG
CGATCCCCGTGGGCCCAGAGCCCAGCCCGAGGTTGGCATGGGCCAACGGAGCAGTAGAAACGTCC
CGGTCGCCACACCCAACCACCTTGACCAAGAGATTGGCGATGGAGGTCACCGCGTAGTCCCGGGT
GGTGTGGGGAGTGGGCGAGACCCGGGCCAGCGGCGGTAGCAGCTGGTACAGCGCCCCCACCGGGC
GGTATATCGGAGCCACCACCGCACCATCACTGCTCAAAAAGAGCAAAAAGTACGCCAGCACCCGC
GCCAAGTTGGTGGAGGTGGCCCGCGCGGCCACGGGCTGCGAGTGGGCCAACTGCTGCGCGGCCCA
CTGGAGGTTGTAGACCAACGCCGTCACCACGTCCGCGCAGGCGCCCTCGGCCACCTGGTGCTTCA
CCTGCGGGTTGCACTGGAGCAACTCCCAGAGGAGCATGGTGGCCT
Found at i:40211 original size:24 final size:24
Alignment explanation
Indices: 40161--40223 Score: 83
Period size: 24 Copynumber: 2.6 Consensus size: 24
40151 AGAGCCAGGA
*
40161 GAGACAGAGCCAGGCTGGCCAGAG
1 GAGACCGAGCCAGGCTGGCCAGAG
*
40185 GAGACCGAGCCAGGCTGGCCTTG-G
1 GAGACCGAGCCAGGCTGGCC-AGAG
*
40209 GAGACCGATCCAGGC
1 GAGACCGAGCCAGGC
40224 ACGCCAGCAG
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
24 34 0.97
25 1 0.03
ACGTcount: A:0.24, C:0.29, G:0.40, T:0.08
Consensus pattern (24 bp):
GAGACCGAGCCAGGCTGGCCAGAG
Left flanking sequence: Indices 39661 -- 40160
CGAGCGGGGGTTTTAGGAGGTCCAAAAGCAGGCCCACGAGCCAGGCCACCTCGTCGGGGTTCGAG
AGCTTGGCGAAGAAGCCCCGGACCACGTTGGACTTGCGGGTGAGCTTCATCTTCGCGTGGTCGGC
GTCGGAGACCGCGGGCACGGGGTACGCCACCATCATCACGAGCAACTGGACGCAGTAGGTGAGGT
AGTAGCGGCGCAGCTCGGCCACCAGGGCCGGCAGGGCCGCGTCGACACCGCTGGTGGTGGTGGCC
CGCGCCACCAGGTTGAACAACAGCAGCGCAAGGGCCACGAGCTGGGGCCGCGGCACCAGGGTGAC
GAGATAGGTGAGGGCCTCGGAGCCGTCGACGGCCACCTGGGACGGGAGCTGGTACAACGAGCCCA
GGCAGAGCACGATGATGCACCGGAGCACGTCGGCGCGGTTGGCCTCGAGCACCAAGTTGGGCTGG
CGATAGCGAAGGGAGGGGGAAGGGTGGTCGGAGCCAGAGCCAGGA
Right flanking sequence: Indices 40224 -- 40723
ACGCCAGCAGATACAGAGCCAGCCAGGCCAGCAGATACAGAGCTCACCAGACCCGCGCGTTCGTC
CCGAGTCTCCCGTGTGGTGGCTGGCGAGAGCGTATCGCTCAATGACGTCACCAGCTCCAACCGGG
GCCGTGGCACCTCGTCGTGGCTCAGTTTCGGGCTGAGCAACAGGCCAGCACTCGCACGCAGGCCG
CCTCGCCCGATGGTACCCACCCCTGGCTCCCACACGCACCCGCTGCCCTCCTCGACCGTGAACCC
GGGCGCAAAAAGCATCGCCACAAGCGCCGGAAAAACGTCGCTCCCGCTCACCAGCGGCACCTTAC
ACAGGGCCAGGTTGATCAAGCTGGCCAAGAGCACCCGCGAGTTCAGCTGGAGCGGGTTGGCCTGC
CAGAGCACCGCCAGCATAAGCCCTCGCTCGTAGGCAAAGGGCACAAGCCGGGCCAACCAGCGCAC
GGCGTTGATGGCCGGCCTCAGCGGCGACCCCCGCGGGTTCCGCAC
Found at i:40245 original size:24 final size:24
Alignment explanation
Indices: 40218--40266 Score: 80
Period size: 24 Copynumber: 2.0 Consensus size: 24
40208 GGAGACCGAT
*
40218 CCAGGCACGCCAGCAGATACAGAG
1 CCAGCCACGCCAGCAGATACAGAG
*
40242 CCAGCCAGGCCAGCAGATACAGAG
1 CCAGCCACGCCAGCAGATACAGAG
40266 C
1 C
40267 TCACCAGACC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.33, C:0.35, G:0.29, T:0.04
Consensus pattern (24 bp):
CCAGCCACGCCAGCAGATACAGAG
Left flanking sequence: Indices 39718 -- 40217
GGTTCGAGAGCTTGGCGAAGAAGCCCCGGACCACGTTGGACTTGCGGGTGAGCTTCATCTTCGCG
TGGTCGGCGTCGGAGACCGCGGGCACGGGGTACGCCACCATCATCACGAGCAACTGGACGCAGTA
GGTGAGGTAGTAGCGGCGCAGCTCGGCCACCAGGGCCGGCAGGGCCGCGTCGACACCGCTGGTGG
TGGTGGCCCGCGCCACCAGGTTGAACAACAGCAGCGCAAGGGCCACGAGCTGGGGCCGCGGCACC
AGGGTGACGAGATAGGTGAGGGCCTCGGAGCCGTCGACGGCCACCTGGGACGGGAGCTGGTACAA
CGAGCCCAGGCAGAGCACGATGATGCACCGGAGCACGTCGGCGCGGTTGGCCTCGAGCACCAAGT
TGGGCTGGCGATAGCGAAGGGAGGGGGAAGGGTGGTCGGAGCCAGAGCCAGGAGAGACAGAGCCA
GGCTGGCCAGAGGAGACCGAGCCAGGCTGGCCTTGGGAGACCGAT
Right flanking sequence: Indices 40267 -- 40766
TCACCAGACCCGCGCGTTCGTCCCGAGTCTCCCGTGTGGTGGCTGGCGAGAGCGTATCGCTCAAT
GACGTCACCAGCTCCAACCGGGGCCGTGGCACCTCGTCGTGGCTCAGTTTCGGGCTGAGCAACAG
GCCAGCACTCGCACGCAGGCCGCCTCGCCCGATGGTACCCACCCCTGGCTCCCACACGCACCCGC
TGCCCTCCTCGACCGTGAACCCGGGCGCAAAAAGCATCGCCACAAGCGCCGGAAAAACGTCGCTC
CCGCTCACCAGCGGCACCTTACACAGGGCCAGGTTGATCAAGCTGGCCAAGAGCACCCGCGAGTT
CAGCTGGAGCGGGTTGGCCTGCCAGAGCACCGCCAGCATAAGCCCTCGCTCGTAGGCAAAGGGCA
CAAGCCGGGCCAACCAGCGCACGGCGTTGATGGCCGGCCTCAGCGGCGACCCCCGCGGGTTCCGC
ACCACCTCGGCCATGGCTAGCCGCACCATCATCACGAAATTGATC
Found at i:41477 original size:11 final size:11
Alignment explanation
Indices: 41461--41485 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
41451 GAGGGCAACA
41461 TGGGGAAGCGC
1 TGGGGAAGCGC
41472 TGGGGAAGCGC
1 TGGGGAAGCGC
41483 TGG
1 TGG
41486 TTGGGGGGAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.16, C:0.16, G:0.56, T:0.12
Consensus pattern (11 bp):
TGGGGAAGCGC
Left flanking sequence: Indices 40961 -- 41460
GGTCGGGAGATCTTTTCGCGCGAATGTGGGGAGAGTGGGTGGGTGGGCCGGGCCGGTGTGGGGTG
TGTGGGGGCGGTGGAGAGAAATGGAGGACGTAGTGGTGTTGGTGGGTGGGTTTAGAGTGTGTACG
TGCTTTTTTTCTTTTGAATTGGTGGGACACTCGCTGTTTTAGCGGGCCTTCTGGAGTGGTATTTC
ACTACCTGTCAGTCGGGAAATGTTCCGAGACCGGGTTCAAGACCGCAAGTACGAGGGAGTCAATA
GGACACGAGATTAGCCAGATATGCGGGGTAGAGGTGGAGTCGGGGTTGTGGGTGTTGGACGTGGG
GTGCAGTGGGCGGTGGGGTCGACGGGGCTTAGGTGGGACGAGTTAGGTCCGGTCTAACTCGTCCC
ACCCAGGGTCCACTGTGCAGCTTCCATGCCGGGAAGCGCAAGCTGCTCGCTTCGATTGACCGTGT
TGGACGCAGTGGACGCAGGCAGCTGCAGAGGTTAGGAGGGCAACA
Right flanking sequence: Indices 41486 -- 41985
TTGGGGGGAGTTTTGGGTAGGACGGTTGGGTGTGTGATAATGGGTTTAGAGGTACGGTACGGTTC
AGAAGCTATTCGGTCTGAAAAACTTACACAGAAGTAGAGATGCGAGTCGTATGCAACAGCCAAGA
TGGAAGGAGGAATGCGGTCCGGTTTGAATGCGGTCTGGGTTGTACGTAAAACTCTATTTGAGTTT
AGAGAATGTGAAATACGAGGTTAGTGTAGAGATACGTGGAGCCCTTTGAGATGCAAGCACGACAC
AGATGCAAAAACGATACTGTAACGATGCCAGTCACAAAGACCCCTAGCAACATGCTTCCAACCAA
ACCATCACTTAGACCACCCGTTAACTTCAATGCACTTTATTATGCTACTCTATGCTGAATATATT
AGTTGGCTGGAGCTTTTCTTAGTCCAAGACTGAACGAGCAATCCATAAACGACTCTCACATCGCC
CTGCGCTTCTGCCACGGGCCGTCCCCGTCGGGCTGACGCTTGGTT
Found at i:43319 original size:6 final size:6
Alignment explanation
Indices: 43303--43357 Score: 103
Period size: 6 Copynumber: 9.3 Consensus size: 6
43293 AGTGGAGGGG
43303 GAAGG- GAAGGA GAAGGA GAAGGA GAAGGA GAAGGA GAAGGA GAAGGA
1 GAAGGA GAAGGA GAAGGA GAAGGA GAAGGA GAAGGA GAAGGA GAAGGA
43350 GAAGGA GA
1 GAAGGA GA
43358 TCCGGAGAAA
Statistics
Matches: 49, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
5 5 0.10
6 44 0.90
ACGTcount: A:0.49, C:0.00, G:0.51, T:0.00
Consensus pattern (6 bp):
GAAGGA
Left flanking sequence: Indices 42803 -- 43302
TGTAACGGTGTTGTTCGAGGTCACAGACGTCTAGATCAAGGGCTTGTGACAGGTGCGATGAGGTA
GTGGCAAGCCCAACTGGCGGAGCACGTGAGCAAGGTCAATGGCAGCACCCTCGAGACAGAGCAGC
AGAACAGCGCGGTGGCCCACGGGAAATTCAACGAGGTTCGGATGAGTCGACTCGCACGTGTAATT
GCAATTTTCGTGGAACCCGGAAAAAACCACCGGCCTGTGCCCCACATGCACCCCGCGAACCGGAA
GAACGCAGGATGCGGTGGCTGGTGTCGCGGGCGTATGTGGGGTGCTGGGATGGGGTTTTGGGGCG
GGTGGGACCCGGACTAGATTGGGCTTTTTGGATTTGGGGTGGTTTGATTGGCCCGCTCGGAAGGA
GCCGGGCGAGCCGTGGTCGCGCCCGGAAAACCCCGCGTTCAGCCGTGCTGAGCGCTAGGCGCTGT
GCTGTAGGGACTAATGAGGTTAGAGTGTTTTGGGAAGTGGAGGGG
Right flanking sequence: Indices 43358 -- 43857
TCCGGAGAAACATCCTTGTGGGACTGTTTGGAGAAATGACCTTGCGGATCAGTTTGGTTGGCGTG
ACTCGATTTGTGTATTGGCGATTTGAAAATATGAAGCTCAAATTTCGGTGATGATACTACGACAA
GGTTAGCCAGTGTCGGAACTTGTAAGGTCGCTTTTCATTGGGGCCATCGTACACTGCTTAGATAG
TGCGTTAGGTCTGCAGCCCGAGATCGCTTGATTTAATGAGAATGTTCTGGTGTCCATAACCCCAC
GGAAGTTTGAGTCTTCGTGAGCACCGAGTCTGAAATCTATCCAATTAGCTTAGTACAAACTCACC
AATGAGTGCGTTTTCTCTGGTCGTTGTTAGTCTTAGCACTACGGGCATGAGATACCGCTCACTTC
AGCGGGTATTCCGATTTGAAATATCGACAAAAATAACCTAATCCAAACCAATACAATATCCATAG
TGAAGCTTTGATGATTTTCAATAAATCTATCGTTTCATGACAGGG
Found at i:44226 original size:8 final size:8
Alignment explanation
Indices: 44213--44262 Score: 64
Period size: 8 Copynumber: 6.0 Consensus size: 8
44203 CTACCAACTG
44213 CCAAACAC
1 CCAAACAC
*
44221 CCAAACAT
1 CCAAACAC
44229 CCAAACAC
1 CCAAACAC
44237 CCAAACATC
1 CCAAACA-C
*
44246 CCGAAACAT
1 CC-AAACAC
44255 CCAAACAC
1 CCAAACAC
44263 ACTGACACTA
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
8 26 0.72
9 5 0.14
10 5 0.14
ACGTcount: A:0.48, C:0.44, G:0.02, T:0.06
Consensus pattern (8 bp):
CCAAACAC
Left flanking sequence: Indices 43713 -- 44212
TCTTAGCACTACGGGCATGAGATACCGCTCACTTCAGCGGGTATTCCGATTTGAAATATCGACAA
AAATAACCTAATCCAAACCAATACAATATCCATAGTGAAGCTTTGATGATTTTCAATAAATCTAT
CGTTTCATGACAGGGCATCTTCCATTCATCGTAATAAGAGTATATTCATTTGCAGTTGGCTGGAG
TAGGTGTGCCACCAACCAACTATCCAACCGCCGTGACATTTTAAAAACAGCTCAATACCATTCCC
ACAGTACCACTCACTACCGCAACCAACCCTAATCCCCTCCATCTCCCCGTTACGCCGTCTACGTT
GGGACCTTGTTTCCTCCAACAGCGTGTCCTGCATATAACTCGGCTGCAAAAAGTCTAACCTGTCA
AAAACCTTACCAATTTGATTCACTTTCGAGCCCACGAAAGACTCAAAAACACGCACACAGGCACC
CACAGGCATAACAAACACACGACACCCACCAGACACTACCAACTG
Right flanking sequence: Indices 44263 -- 44762
ACTGACACTACCAACTACGAAACACCCACTCTACCCCGTCCACCCACTCTTCCCCCCCTCTCCAC
CTATTCTCTCGTCATAGATTTCATATCGTGCTATATAGGTCATTTTTGCGACAACCGGCGCACCA
ACGTCTTTAACTCGGCCAGGTCGTTGTCCTCGTTCTCGATCTCCTGCTGCATCCGCACCAGCCGC
GCCTCCTCCAACCGGCGCTGCTCCTCCACCAGCGGCGGCAACGCCTCGTTGGCCAAGTCGGCCTG
GCGCGCGTCCTCGAAGCTCAGGATCGTCGACCGCAACCCCTCCAGCCCGTTGATCAACAGGCCCT
TGGGCAACTGGCCGCGGTTCAAGTCCTTGAGGCGTGCCACCAGCTCCAGCTCCTCACGCAAGATC
TTGTACATCCGCAGCATCCGCCCGATCGCAAGCACCTTGTTGCGCAAGATGGCGCGCTTGTGGTC
CATCAGGTCCTCGTCCGCGTCCGCCAACAGCTCCTCCATGCCCTC
Found at i:44234 original size:16 final size:17
Alignment explanation
Indices: 44213--44261 Score: 73
Period size: 16 Copynumber: 2.9 Consensus size: 17
44203 CTACCAACTG
44213 CCAAACACCCAAACAT-
1 CCAAACACCCAAACATC
44229 CCAAACACCCAAACATC
1 CCAAACACCCAAACATC
*
44246 CCGAAACATCCAAACA
1 CC-AAACACCCAAACA
44262 CACTGACACT
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
16 16 0.53
17 2 0.07
18 12 0.40
ACGTcount: A:0.49, C:0.43, G:0.02, T:0.06
Consensus pattern (17 bp):
CCAAACACCCAAACATC
Left flanking sequence: Indices 43713 -- 44212
TCTTAGCACTACGGGCATGAGATACCGCTCACTTCAGCGGGTATTCCGATTTGAAATATCGACAA
AAATAACCTAATCCAAACCAATACAATATCCATAGTGAAGCTTTGATGATTTTCAATAAATCTAT
CGTTTCATGACAGGGCATCTTCCATTCATCGTAATAAGAGTATATTCATTTGCAGTTGGCTGGAG
TAGGTGTGCCACCAACCAACTATCCAACCGCCGTGACATTTTAAAAACAGCTCAATACCATTCCC
ACAGTACCACTCACTACCGCAACCAACCCTAATCCCCTCCATCTCCCCGTTACGCCGTCTACGTT
GGGACCTTGTTTCCTCCAACAGCGTGTCCTGCATATAACTCGGCTGCAAAAAGTCTAACCTGTCA
AAAACCTTACCAATTTGATTCACTTTCGAGCCCACGAAAGACTCAAAAACACGCACACAGGCACC
CACAGGCATAACAAACACACGACACCCACCAGACACTACCAACTG
Right flanking sequence: Indices 44262 -- 44761
CACTGACACTACCAACTACGAAACACCCACTCTACCCCGTCCACCCACTCTTCCCCCCCTCTCCA
CCTATTCTCTCGTCATAGATTTCATATCGTGCTATATAGGTCATTTTTGCGACAACCGGCGCACC
AACGTCTTTAACTCGGCCAGGTCGTTGTCCTCGTTCTCGATCTCCTGCTGCATCCGCACCAGCCG
CGCCTCCTCCAACCGGCGCTGCTCCTCCACCAGCGGCGGCAACGCCTCGTTGGCCAAGTCGGCCT
GGCGCGCGTCCTCGAAGCTCAGGATCGTCGACCGCAACCCCTCCAGCCCGTTGATCAACAGGCCC
TTGGGCAACTGGCCGCGGTTCAAGTCCTTGAGGCGTGCCACCAGCTCCAGCTCCTCACGCAAGAT
CTTGTACATCCGCAGCATCCGCCCGATCGCAAGCACCTTGTTGCGCAAGATGGCGCGCTTGTGGT
CCATCAGGTCCTCGTCCGCGTCCGCCAACAGCTCCTCCATGCCCT
Found at i:45305 original size:18 final size:18
Alignment explanation
Indices: 45282--45318 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
45272 CGCGGAACCG
* *
45282 GTCCAACCGGTTCAAGTC
1 GTCCAACAGCTTCAAGTC
45300 GTCCAACAGCTTCAAGTC
1 GTCCAACAGCTTCAAGTC
45318 G
1 G
45319 GGCGAAAGGC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.24, C:0.32, G:0.22, T:0.22
Consensus pattern (18 bp):
GTCCAACAGCTTCAAGTC
Left flanking sequence: Indices 44782 -- 45281
ACGGGGGTCTCCTCGTCCAACTCCTCCTCGGTGCAGATGTTCAAGATCAGCACCAACATGTCGGT
CACCTTTTCGCCGACAAACGGCAACAGCCACTTGAACACGTCCATAAAGTGCGGCAACCAGTACG
GGTGCGGCAGCGCGTTGAACTGGCGGATGTTCATCACGTTGTTCTCGTACTTGAGCACCGCAGCC
TTGTTGTTGTAGGTGTCCAAGTAGTTGGGCGCGGAAAACATCGTCAACAACAGCGGGAACAGCAT
GGTTTTCGTGGGTTTGTACATCCGGTACCCCGCGTCCTGGGCCTCGTGCGCCCGGATGATCAGCA
ACAACCCTGTGCGCTCCAAAAATTGGCACAGCGCCTTGTAGGTGAACGCGTACGAGCACCCGCGC
ACGGTGTTGCGCACGTACAACAGCAGCCCCTCGTCGTCGTCGTAGTCCTCGATGGGGTCGGCCCA
GAGCAAGTCGCACATCAACCCGCGCGTGGGCGGCTCGCGGAACCG
Right flanking sequence: Indices 45319 -- 45818
GGCGAAAGGCCCCCGTGCACACAGAAGAACTGGCGCTCGCGGTTCAGGTTGAGCACGATCGCCGT
GAGCGGCAACGTGTTGAACAGCGCCAACAGCGCCTCGTACACCTGGTCGGAGTACTTGTGCAAGC
ACTCGTTCTTGAAGGTGAAGTACTCGGTGAGATGGCGGCACTCGTGGTTTCCCCGCAACATCCAG
AGCCGCGACGGGAAATTGAGCTTGAGCGCGTAGAGATAGAGCAAGCACTCGATGGAAAACAGGCC
CCGGTCGACGTAGTCGCCCAAAAAGAGGTACGGGGTGGTGGCGGGGTCGCCGCCCACGTCAAACA
ACCGCATCAAGTCGTAGTACTGCCCGTGCACGTCGCCACAGATGGTCACCGGCGCCGGCACCTCC
AAAAGCGTCGGTTCCTTGGCCAAGAGGTCCAGCGCCATGTTCAAGATGCGGATGGCCTGGGGCTC
GGTGAGCCGGCCCTCGTTGAAGAAGTGGTCGCGCAAGAACTTGTG
Found at i:46211 original size:11 final size:11
Alignment explanation
Indices: 46195--46232 Score: 76
Period size: 11 Copynumber: 3.5 Consensus size: 11
46185 TGGTTTTTAG
46195 GGGTTGGGTGT
1 GGGTTGGGTGT
46206 GGGTTGGGTGT
1 GGGTTGGGTGT
46217 GGGTTGGGTGT
1 GGGTTGGGTGT
46228 GGGTT
1 GGGTT
46233 TGGCGGGTGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 27 1.00
ACGTcount: A:0.00, C:0.00, G:0.63, T:0.37
Consensus pattern (11 bp):
GGGTTGGGTGT
Left flanking sequence: Indices 45695 -- 46194
GCGCCGGCACCTCCAAAAGCGTCGGTTCCTTGGCCAAGAGGTCCAGCGCCATGTTCAAGATGCGG
ATGGCCTGGGGCTCGGTGAGCCGGCCCTCGTTGAAGAAGTGGTCGCGCAAGAACTTGTGGTTGGG
GGTGCCGTCGGGCCCAAACACCTCGTCGTCCCGCGGTCGTCGGGCCACGGGCGCAGGCACCAGAG
GCACGGCTCTGCGGCGGGTGTGGTAGGTGGTGCCGTCATCCGCGGTGTACACCAGGTAGTCGGTG
ACGTTGGGCACTCGGGTCTTCAACGCCAGGAGCGCGTTGTTGATCTGGGTGGTGTTTTCGGTGGC
CAGTCTCAGGGTCATGGTGGCCTGAGGGATACGTAGACAGAGAAATGCGCGCGAAGAAATAAGTG
AGTGGTGGGCGGGAAGGTGGGCGAGAAGGAAGAGGTGGGAGAGGGTGTGTAATAGGGGTGTGGAT
GGGGTTGTGGGTGGATGGGTGTGGTGAGGTGGGTGTGGTTTTTAG
Right flanking sequence: Indices 46233 -- 46732
TGGCGGGTGGTGGGAAAGATAAGGAACGAAGGTGGAATGTGAGATGGGGAGAATGGAGAAGGGAA
AGGAGAAGGGAGTGGAGAAGGGAGAAATGGAGAAGGGAGAGGTGGGAGAGGTGGGTGGAGAAACG
GAGTGGAGAAACGGAAGGGAGGTATGTATAGTAAAGGTAGTAGTTTTCGTCGTTGACGTGGTTGC
TGCTGGTGGTCGCTGTGACACTTGCAGTGATCTGCGTTTCTTCTTCGTTAGTGCCAAGCTGTCAC
GTTCTATTTTTATCCGGTGGGCCAACTCCCACCCCGCCAGAGCCAATTGGCTCCGTGCTACCGCC
GGCTCTCGTCTCCGTGGCCCGTCAACCGCGCCCCGTTGCGGCATTTCTGGTGACACGACGCGTGT
CGCAGTGCTCAGCCGCGCTGTGGAGGTGGTGGCAGAGAGTGGGGAAGGATGGGTGGAGAAGAGAA
GAGATATTAGTGGGTGCTTTATTGTATCGTAGCTACTGGTTTTCA
Found at i:46246 original size:22 final size:22
Alignment explanation
Indices: 46195--46242 Score: 69
Period size: 22 Copynumber: 2.1 Consensus size: 22
46185 TGGTTTTTAG
*
46195 GGGTTGGGTGTGGGTTGGGTGT
1 GGGTTGGGTGTGGGTTGGGGGT
46217 GGGTTGGGTGTGGGTTTGGCGGGT
1 GGGTTGGGTGTGGG-TTGG-GGGT
46241 GG
1 GG
46243 TGGGAAAGAT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 14 0.61
23 4 0.17
24 5 0.22
ACGTcount: A:0.00, C:0.02, G:0.65, T:0.33
Consensus pattern (22 bp):
GGGTTGGGTGTGGGTTGGGGGT
Left flanking sequence: Indices 45695 -- 46194
GCGCCGGCACCTCCAAAAGCGTCGGTTCCTTGGCCAAGAGGTCCAGCGCCATGTTCAAGATGCGG
ATGGCCTGGGGCTCGGTGAGCCGGCCCTCGTTGAAGAAGTGGTCGCGCAAGAACTTGTGGTTGGG
GGTGCCGTCGGGCCCAAACACCTCGTCGTCCCGCGGTCGTCGGGCCACGGGCGCAGGCACCAGAG
GCACGGCTCTGCGGCGGGTGTGGTAGGTGGTGCCGTCATCCGCGGTGTACACCAGGTAGTCGGTG
ACGTTGGGCACTCGGGTCTTCAACGCCAGGAGCGCGTTGTTGATCTGGGTGGTGTTTTCGGTGGC
CAGTCTCAGGGTCATGGTGGCCTGAGGGATACGTAGACAGAGAAATGCGCGCGAAGAAATAAGTG
AGTGGTGGGCGGGAAGGTGGGCGAGAAGGAAGAGGTGGGAGAGGGTGTGTAATAGGGGTGTGGAT
GGGGTTGTGGGTGGATGGGTGTGGTGAGGTGGGTGTGGTTTTTAG
Right flanking sequence: Indices 46243 -- 46742
TGGGAAAGATAAGGAACGAAGGTGGAATGTGAGATGGGGAGAATGGAGAAGGGAAAGGAGAAGGG
AGTGGAGAAGGGAGAAATGGAGAAGGGAGAGGTGGGAGAGGTGGGTGGAGAAACGGAGTGGAGAA
ACGGAAGGGAGGTATGTATAGTAAAGGTAGTAGTTTTCGTCGTTGACGTGGTTGCTGCTGGTGGT
CGCTGTGACACTTGCAGTGATCTGCGTTTCTTCTTCGTTAGTGCCAAGCTGTCACGTTCTATTTT
TATCCGGTGGGCCAACTCCCACCCCGCCAGAGCCAATTGGCTCCGTGCTACCGCCGGCTCTCGTC
TCCGTGGCCCGTCAACCGCGCCCCGTTGCGGCATTTCTGGTGACACGACGCGTGTCGCAGTGCTC
AGCCGCGCTGTGGAGGTGGTGGCAGAGAGTGGGGAAGGATGGGTGGAGAAGAGAAGAGATATTAG
TGGGTGCTTTATTGTATCGTAGCTACTGGTTTTCACCCTGTTTTG
Found at i:46304 original size:12 final size:12
Alignment explanation
Indices: 46287--46335 Score: 53
Period size: 12 Copynumber: 3.8 Consensus size: 12
46277 TGGGGAGAAT
46287 GGAGAAGGGAAA
1 GGAGAAGGGAAA
**
46299 GGAGAAGGGAGT
1 GGAGAAGGGAAA
46311 GGAGAAGGGAGAAA
1 GGAGAA-GG-GAAA
46325 TGGAGAAGGGA
1 -GGAGAAGGGA
46336 GAGGTGGGAG
Statistics
Matches: 30, Mismatches: 4, Indels: 5
0.77 0.10 0.13
Matches are distributed among these distances:
12 16 0.53
13 4 0.13
14 4 0.13
15 6 0.20
ACGTcount: A:0.43, C:0.00, G:0.53, T:0.04
Consensus pattern (12 bp):
GGAGAAGGGAAA
Left flanking sequence: Indices 45787 -- 46286
TCGTTGAAGAAGTGGTCGCGCAAGAACTTGTGGTTGGGGGTGCCGTCGGGCCCAAACACCTCGTC
GTCCCGCGGTCGTCGGGCCACGGGCGCAGGCACCAGAGGCACGGCTCTGCGGCGGGTGTGGTAGG
TGGTGCCGTCATCCGCGGTGTACACCAGGTAGTCGGTGACGTTGGGCACTCGGGTCTTCAACGCC
AGGAGCGCGTTGTTGATCTGGGTGGTGTTTTCGGTGGCCAGTCTCAGGGTCATGGTGGCCTGAGG
GATACGTAGACAGAGAAATGCGCGCGAAGAAATAAGTGAGTGGTGGGCGGGAAGGTGGGCGAGAA
GGAAGAGGTGGGAGAGGGTGTGTAATAGGGGTGTGGATGGGGTTGTGGGTGGATGGGTGTGGTGA
GGTGGGTGTGGTTTTTAGGGGTTGGGTGTGGGTTGGGTGTGGGTTGGGTGTGGGTTTGGCGGGTG
GTGGGAAAGATAAGGAACGAAGGTGGAATGTGAGATGGGGAGAAT
Right flanking sequence: Indices 46336 -- 46835
GAGGTGGGAGAGGTGGGTGGAGAAACGGAGTGGAGAAACGGAAGGGAGGTATGTATAGTAAAGGT
AGTAGTTTTCGTCGTTGACGTGGTTGCTGCTGGTGGTCGCTGTGACACTTGCAGTGATCTGCGTT
TCTTCTTCGTTAGTGCCAAGCTGTCACGTTCTATTTTTATCCGGTGGGCCAACTCCCACCCCGCC
AGAGCCAATTGGCTCCGTGCTACCGCCGGCTCTCGTCTCCGTGGCCCGTCAACCGCGCCCCGTTG
CGGCATTTCTGGTGACACGACGCGTGTCGCAGTGCTCAGCCGCGCTGTGGAGGTGGTGGCAGAGA
GTGGGGAAGGATGGGTGGAGAAGAGAAGAGATATTAGTGGGTGCTTTATTGTATCGTAGCTACTG
GTTTTCACCCTGTTTTGACGTGGTTTCTCCGTCTAGCTCCTGCTGGCTCAGCGCAACCGTTGCAG
GCGCAGACAAATGTTTACGTGGACGGCATAGGTCATCGATGCAAG
Found at i:46383 original size:13 final size:13
Alignment explanation
Indices: 46352--46377 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
46342 GGAGAGGTGG
46352 GTGGAGAAACGGA
1 GTGGAGAAACGGA
46365 GTGGAGAAACGGA
1 GTGGAGAAACGGA
46378 AGGGAGGTAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.08, G:0.46, T:0.08
Consensus pattern (13 bp):
GTGGAGAAACGGA
Left flanking sequence: Indices 45852 -- 46351
GTCCCGCGGTCGTCGGGCCACGGGCGCAGGCACCAGAGGCACGGCTCTGCGGCGGGTGTGGTAGG
TGGTGCCGTCATCCGCGGTGTACACCAGGTAGTCGGTGACGTTGGGCACTCGGGTCTTCAACGCC
AGGAGCGCGTTGTTGATCTGGGTGGTGTTTTCGGTGGCCAGTCTCAGGGTCATGGTGGCCTGAGG
GATACGTAGACAGAGAAATGCGCGCGAAGAAATAAGTGAGTGGTGGGCGGGAAGGTGGGCGAGAA
GGAAGAGGTGGGAGAGGGTGTGTAATAGGGGTGTGGATGGGGTTGTGGGTGGATGGGTGTGGTGA
GGTGGGTGTGGTTTTTAGGGGTTGGGTGTGGGTTGGGTGTGGGTTGGGTGTGGGTTTGGCGGGTG
GTGGGAAAGATAAGGAACGAAGGTGGAATGTGAGATGGGGAGAATGGAGAAGGGAAAGGAGAAGG
GAGTGGAGAAGGGAGAAATGGAGAAGGGAGAGGTGGGAGAGGTGG
Right flanking sequence: Indices 46378 -- 46877
AGGGAGGTATGTATAGTAAAGGTAGTAGTTTTCGTCGTTGACGTGGTTGCTGCTGGTGGTCGCTG
TGACACTTGCAGTGATCTGCGTTTCTTCTTCGTTAGTGCCAAGCTGTCACGTTCTATTTTTATCC
GGTGGGCCAACTCCCACCCCGCCAGAGCCAATTGGCTCCGTGCTACCGCCGGCTCTCGTCTCCGT
GGCCCGTCAACCGCGCCCCGTTGCGGCATTTCTGGTGACACGACGCGTGTCGCAGTGCTCAGCCG
CGCTGTGGAGGTGGTGGCAGAGAGTGGGGAAGGATGGGTGGAGAAGAGAAGAGATATTAGTGGGT
GCTTTATTGTATCGTAGCTACTGGTTTTCACCCTGTTTTGACGTGGTTTCTCCGTCTAGCTCCTG
CTGGCTCAGCGCAACCGTTGCAGGCGCAGACAAATGTTTACGTGGACGGCATAGGTCATCGATGC
AAGTGCCGATCGCGTCGGTCTAGACCGGCAGACGCACGCGAACAA
Found at i:47056 original size:15 final size:14
Alignment explanation
Indices: 47006--47071 Score: 105
Period size: 14 Copynumber: 4.6 Consensus size: 14
46996 AGTGTCTTGA
47006 ACGAGGTGGACTAG
1 ACGAGGTGGACTAG
47020 ACGAGGTGGACTAG
1 ACGAGGTGGACTAG
47034 ACGAGGTGGACTAGG
1 ACGAGGTGGACTA-G
*
47049 ATGAGGTGGACTAG
1 ACGAGGTGGACTAG
47063 ACTGAGGTG
1 AC-GAGGTG
47072 AATCAGACTA
Statistics
Matches: 48, Mismatches: 2, Indels: 3
0.91 0.04 0.06
Matches are distributed among these distances:
14 29 0.60
15 19 0.40
ACGTcount: A:0.27, C:0.12, G:0.44, T:0.17
Consensus pattern (14 bp):
ACGAGGTGGACTAG
Left flanking sequence: Indices 46506 -- 47005
CCGGTGGGCCAACTCCCACCCCGCCAGAGCCAATTGGCTCCGTGCTACCGCCGGCTCTCGTCTCC
GTGGCCCGTCAACCGCGCCCCGTTGCGGCATTTCTGGTGACACGACGCGTGTCGCAGTGCTCAGC
CGCGCTGTGGAGGTGGTGGCAGAGAGTGGGGAAGGATGGGTGGAGAAGAGAAGAGATATTAGTGG
GTGCTTTATTGTATCGTAGCTACTGGTTTTCACCCTGTTTTGACGTGGTTTCTCCGTCTAGCTCC
TGCTGGCTCAGCGCAACCGTTGCAGGCGCAGACAAATGTTTACGTGGACGGCATAGGTCATCGAT
GCAAGTGCCGATCGCGTCGGTCTAGACCGGCAGACGCACGCGAACAAGGGGGTCGGATCCCCTGG
GGGTGCCACGGGCCTCTGCGGATACGACAATATACGACTGGGAATTTAGGTTAGAGGCAATTGGC
TCCTGAAATTAGGCAGGGGCTGGCCAGTGGACAGGAGTGTCTTGA
Right flanking sequence: Indices 47072 -- 47571
AATCAGACTAAGACTGTTAGAAAATTATGCAGAGAGAACGGGTAGAGGGTAGATTCAGGCAGAGT
AGAAAGGCAAGCAAAAGGGCCGTTGATACAGTTAATACAGTTGACACAATTGACACATTGACACA
GTTGACACAGTGAACAGTTGACACAGTTGACACAGTGAAACAGTTGAAACAGTAGTAATGACTTG
ACTGTCCCAGATGGCTGTATCTTCGATCCGTTGAGCCTCGTGATGAATCCACTTGATCGGTTAAC
TCATGTACTGGCCAAGAGATAGTTTCCCCTAAAACTGAATGAATCGGTAATTGTTGACGATTAAT
CCAGCTAAGATATAATTTTGGCGTTAAATCTAGCTGATGGTCGATCTAAGATACAATTTTGACGT
AAATCTAGCTTGAGATGGTCAATCTGTGGTATTCTTTCGAATTGTGGGATGGTATCGTAGCATCA
ACAGTAAAGTTGGCCGAGACCCGCTATTTTTATCCATCCAGTCTC
Found at i:47224 original size:42 final size:42
Alignment explanation
Indices: 47173--47254 Score: 128
Period size: 42 Copynumber: 2.0 Consensus size: 42
47163 TACAGTTAAT
* * *
47173 ACAGTTGACACAATTGACACATTGACACAGTTGACACAGTGA
1 ACAGTTGACACAATTGACACAGTGAAACAGTTGAAACAGTGA
*
47215 ACAGTTGACACAGTTGACACAGTGAAACAGTTGAAACAGT
1 ACAGTTGACACAATTGACACAGTGAAACAGTTGAAACAGT
47255 AGTAATGACT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 36 1.00
ACGTcount: A:0.39, C:0.20, G:0.21, T:0.21
Consensus pattern (42 bp):
ACAGTTGACACAATTGACACAGTGAAACAGTTGAAACAGTGA
Left flanking sequence: Indices 46673 -- 47172
GGGTGGAGAAGAGAAGAGATATTAGTGGGTGCTTTATTGTATCGTAGCTACTGGTTTTCACCCTG
TTTTGACGTGGTTTCTCCGTCTAGCTCCTGCTGGCTCAGCGCAACCGTTGCAGGCGCAGACAAAT
GTTTACGTGGACGGCATAGGTCATCGATGCAAGTGCCGATCGCGTCGGTCTAGACCGGCAGACGC
ACGCGAACAAGGGGGTCGGATCCCCTGGGGGTGCCACGGGCCTCTGCGGATACGACAATATACGA
CTGGGAATTTAGGTTAGAGGCAATTGGCTCCTGAAATTAGGCAGGGGCTGGCCAGTGGACAGGAG
TGTCTTGAACGAGGTGGACTAGACGAGGTGGACTAGACGAGGTGGACTAGGATGAGGTGGACTAG
ACTGAGGTGAATCAGACTAAGACTGTTAGAAAATTATGCAGAGAGAACGGGTAGAGGGTAGATTC
AGGCAGAGTAGAAAGGCAAGCAAAAGGGCCGTTGATACAGTTAAT
Right flanking sequence: Indices 47255 -- 47754
AGTAATGACTTGACTGTCCCAGATGGCTGTATCTTCGATCCGTTGAGCCTCGTGATGAATCCACT
TGATCGGTTAACTCATGTACTGGCCAAGAGATAGTTTCCCCTAAAACTGAATGAATCGGTAATTG
TTGACGATTAATCCAGCTAAGATATAATTTTGGCGTTAAATCTAGCTGATGGTCGATCTAAGATA
CAATTTTGACGTAAATCTAGCTTGAGATGGTCAATCTGTGGTATTCTTTCGAATTGTGGGATGGT
ATCGTAGCATCAACAGTAAAGTTGGCCGAGACCCGCTATTTTTATCCATCCAGTCTCCTTCACAA
TTCCCCCTACCACACCTTCTTTTAGTCTGTTTTATATTAGGTTGATGGTCTCAACATAGGTCTAT
ACACTATCAGCGTCTACTCCTTCGACGAGTCGACGTACACCGTCGACGCCGCCGCCAGGAAGCCG
TTGAACGAGGTCGAGGCCGCGCTGGTGTACGCCCCGAGATGGGGA
Found at i:47228 original size:25 final size:25
Alignment explanation
Indices: 47173--47254 Score: 71
Period size: 26 Copynumber: 3.2 Consensus size: 25
47163 TACAGTTAAT
* *
47173 ACAGTTGACACAATTGACACATTGA
1 ACAGTTGACACAGTTGACACAGTGA
47198 CACAGTTGACACAG-TGA-ACAGTTGA
1 -ACAGTTGACACAGTTGACACAG-TGA
*
47223 CACAGTTGACACAG-TGAAACAGTTGAA
1 -ACAGTTGACACAGTTGACACAG-TG-A
47250 ACAGT
1 ACAGT
47255 AGTAATGACT
Statistics
Matches: 51, Mismatches: 2, Indels: 6
0.86 0.03 0.10
Matches are distributed among these distances:
24 3 0.06
25 23 0.45
26 24 0.47
27 1 0.02
ACGTcount: A:0.39, C:0.20, G:0.21, T:0.21
Consensus pattern (25 bp):
ACAGTTGACACAGTTGACACAGTGA
Left flanking sequence: Indices 46673 -- 47172
GGGTGGAGAAGAGAAGAGATATTAGTGGGTGCTTTATTGTATCGTAGCTACTGGTTTTCACCCTG
TTTTGACGTGGTTTCTCCGTCTAGCTCCTGCTGGCTCAGCGCAACCGTTGCAGGCGCAGACAAAT
GTTTACGTGGACGGCATAGGTCATCGATGCAAGTGCCGATCGCGTCGGTCTAGACCGGCAGACGC
ACGCGAACAAGGGGGTCGGATCCCCTGGGGGTGCCACGGGCCTCTGCGGATACGACAATATACGA
CTGGGAATTTAGGTTAGAGGCAATTGGCTCCTGAAATTAGGCAGGGGCTGGCCAGTGGACAGGAG
TGTCTTGAACGAGGTGGACTAGACGAGGTGGACTAGACGAGGTGGACTAGGATGAGGTGGACTAG
ACTGAGGTGAATCAGACTAAGACTGTTAGAAAATTATGCAGAGAGAACGGGTAGAGGGTAGATTC
AGGCAGAGTAGAAAGGCAAGCAAAAGGGCCGTTGATACAGTTAAT
Right flanking sequence: Indices 47255 -- 47754
AGTAATGACTTGACTGTCCCAGATGGCTGTATCTTCGATCCGTTGAGCCTCGTGATGAATCCACT
TGATCGGTTAACTCATGTACTGGCCAAGAGATAGTTTCCCCTAAAACTGAATGAATCGGTAATTG
TTGACGATTAATCCAGCTAAGATATAATTTTGGCGTTAAATCTAGCTGATGGTCGATCTAAGATA
CAATTTTGACGTAAATCTAGCTTGAGATGGTCAATCTGTGGTATTCTTTCGAATTGTGGGATGGT
ATCGTAGCATCAACAGTAAAGTTGGCCGAGACCCGCTATTTTTATCCATCCAGTCTCCTTCACAA
TTCCCCCTACCACACCTTCTTTTAGTCTGTTTTATATTAGGTTGATGGTCTCAACATAGGTCTAT
ACACTATCAGCGTCTACTCCTTCGACGAGTCGACGTACACCGTCGACGCCGCCGCCAGGAAGCCG
TTGAACGAGGTCGAGGCCGCGCTGGTGTACGCCCCGAGATGGGGA
Found at i:47236 original size:9 final size:9
Alignment explanation
Indices: 47158--47254 Score: 112
Period size: 9 Copynumber: 11.2 Consensus size: 9
47148 CAAAAGGGCC
*
47158 GTTGATACA
1 GTTGACACA
* *
47167 GTTAATACA
1 GTTGACACA
47176 GTTGACACA
1 GTTGACACA
*
47185 ATTGACACA
1 GTTGACACA
47194 -TTGACACA
1 GTTGACACA
47202 GTTGACACA
1 GTTGACACA
47211 G-TGA-ACA
1 GTTGACACA
47218 GTTGACACA
1 GTTGACACA
47227 GTTGACACA
1 GTTGACACA
*
47236 G-TGAAACA
1 GTTGACACA
*
47244 GTTGAAACA
1 GTTGACACA
47253 GT
1 GT
47255 AGTAATGACT
Statistics
Matches: 79, Mismatches: 5, Indels: 8
0.86 0.05 0.09
Matches are distributed among these distances:
7 4 0.05
8 21 0.27
9 54 0.68
ACGTcount: A:0.38, C:0.18, G:0.21, T:0.24
Consensus pattern (9 bp):
GTTGACACA
Left flanking sequence: Indices 46658 -- 47157
AGAGTGGGGAAGGATGGGTGGAGAAGAGAAGAGATATTAGTGGGTGCTTTATTGTATCGTAGCTA
CTGGTTTTCACCCTGTTTTGACGTGGTTTCTCCGTCTAGCTCCTGCTGGCTCAGCGCAACCGTTG
CAGGCGCAGACAAATGTTTACGTGGACGGCATAGGTCATCGATGCAAGTGCCGATCGCGTCGGTC
TAGACCGGCAGACGCACGCGAACAAGGGGGTCGGATCCCCTGGGGGTGCCACGGGCCTCTGCGGA
TACGACAATATACGACTGGGAATTTAGGTTAGAGGCAATTGGCTCCTGAAATTAGGCAGGGGCTG
GCCAGTGGACAGGAGTGTCTTGAACGAGGTGGACTAGACGAGGTGGACTAGACGAGGTGGACTAG
GATGAGGTGGACTAGACTGAGGTGAATCAGACTAAGACTGTTAGAAAATTATGCAGAGAGAACGG
GTAGAGGGTAGATTCAGGCAGAGTAGAAAGGCAAGCAAAAGGGCC
Right flanking sequence: Indices 47255 -- 47754
AGTAATGACTTGACTGTCCCAGATGGCTGTATCTTCGATCCGTTGAGCCTCGTGATGAATCCACT
TGATCGGTTAACTCATGTACTGGCCAAGAGATAGTTTCCCCTAAAACTGAATGAATCGGTAATTG
TTGACGATTAATCCAGCTAAGATATAATTTTGGCGTTAAATCTAGCTGATGGTCGATCTAAGATA
CAATTTTGACGTAAATCTAGCTTGAGATGGTCAATCTGTGGTATTCTTTCGAATTGTGGGATGGT
ATCGTAGCATCAACAGTAAAGTTGGCCGAGACCCGCTATTTTTATCCATCCAGTCTCCTTCACAA
TTCCCCCTACCACACCTTCTTTTAGTCTGTTTTATATTAGGTTGATGGTCTCAACATAGGTCTAT
ACACTATCAGCGTCTACTCCTTCGACGAGTCGACGTACACCGTCGACGCCGCCGCCAGGAAGCCG
TTGAACGAGGTCGAGGCCGCGCTGGTGTACGCCCCGAGATGGGGA
Found at i:47246 original size:17 final size:17
Alignment explanation
Indices: 47173--47254 Score: 89
Period size: 17 Copynumber: 4.8 Consensus size: 17
47163 TACAGTTAAT
*
47173 ACAGTTGACACAATTGAC
1 ACAGTTGACAC-AGTGAC
47191 ACA-TTGACACAGTTGAC
1 ACAGTTGACACAG-TGAC
47208 ACAG-TGA-ACAGTTGAC
1 ACAGTTGACACAG-TGAC
*
47224 ACAGTTGACACAGTGAA
1 ACAGTTGACACAGTGAC
*
47241 ACAGTTGAAACAGT
1 ACAGTTGACACAGT
47255 AGTAATGACT
Statistics
Matches: 57, Mismatches: 3, Indels: 9
0.83 0.04 0.13
Matches are distributed among these distances:
16 14 0.25
17 36 0.63
18 7 0.12
ACGTcount: A:0.39, C:0.20, G:0.21, T:0.21
Consensus pattern (17 bp):
ACAGTTGACACAGTGAC
Left flanking sequence: Indices 46673 -- 47172
GGGTGGAGAAGAGAAGAGATATTAGTGGGTGCTTTATTGTATCGTAGCTACTGGTTTTCACCCTG
TTTTGACGTGGTTTCTCCGTCTAGCTCCTGCTGGCTCAGCGCAACCGTTGCAGGCGCAGACAAAT
GTTTACGTGGACGGCATAGGTCATCGATGCAAGTGCCGATCGCGTCGGTCTAGACCGGCAGACGC
ACGCGAACAAGGGGGTCGGATCCCCTGGGGGTGCCACGGGCCTCTGCGGATACGACAATATACGA
CTGGGAATTTAGGTTAGAGGCAATTGGCTCCTGAAATTAGGCAGGGGCTGGCCAGTGGACAGGAG
TGTCTTGAACGAGGTGGACTAGACGAGGTGGACTAGACGAGGTGGACTAGGATGAGGTGGACTAG
ACTGAGGTGAATCAGACTAAGACTGTTAGAAAATTATGCAGAGAGAACGGGTAGAGGGTAGATTC
AGGCAGAGTAGAAAGGCAAGCAAAAGGGCCGTTGATACAGTTAAT
Right flanking sequence: Indices 47255 -- 47754
AGTAATGACTTGACTGTCCCAGATGGCTGTATCTTCGATCCGTTGAGCCTCGTGATGAATCCACT
TGATCGGTTAACTCATGTACTGGCCAAGAGATAGTTTCCCCTAAAACTGAATGAATCGGTAATTG
TTGACGATTAATCCAGCTAAGATATAATTTTGGCGTTAAATCTAGCTGATGGTCGATCTAAGATA
CAATTTTGACGTAAATCTAGCTTGAGATGGTCAATCTGTGGTATTCTTTCGAATTGTGGGATGGT
ATCGTAGCATCAACAGTAAAGTTGGCCGAGACCCGCTATTTTTATCCATCCAGTCTCCTTCACAA
TTCCCCCTACCACACCTTCTTTTAGTCTGTTTTATATTAGGTTGATGGTCTCAACATAGGTCTAT
ACACTATCAGCGTCTACTCCTTCGACGAGTCGACGTACACCGTCGACGCCGCCGCCAGGAAGCCG
TTGAACGAGGTCGAGGCCGCGCTGGTGTACGCCCCGAGATGGGGA
Found at i:49956 original size:13 final size:13
Alignment explanation
Indices: 49938--49980 Score: 52
Period size: 13 Copynumber: 3.4 Consensus size: 13
49928 GATGGCCTTG
49938 GCTGTCAGGCGTT
1 GCTGTCAGGCGTT
* *
49951 GCTGTCAGACGTG
1 GCTGTCAGGCGTT
*
49964 GCTGACAGGCGTT
1 GCTGTCAGGCGTT
49977 -CTGT
1 GCTGT
49981 GTAGGTTGAG
Statistics
Matches: 24, Mismatches: 6, Indels: 1
0.77 0.19 0.03
Matches are distributed among these distances:
12 3 0.12
13 21 0.88
ACGTcount: A:0.12, C:0.23, G:0.37, T:0.28
Consensus pattern (13 bp):
GCTGTCAGGCGTT
Left flanking sequence: Indices 49438 -- 49937
GCGCGTGTTTTGGCATTGTTCGGTCGCTGGCGATCCATTGTTGGTGGCAACCGCGATGAGGGATT
TATCGCATTGGTCAATTGCCCGAGAGTGGTTACGTGGGTCGTTCTAATTGCTCACTTGTCTTGTG
GCTATGCACCCCTTTAGAGGCGGACGCTAATCTTACATATTGTTGCGCACACTGAATCATGTTGC
AGGTTAGGGTCGAGACCTAAGTGGGGGCGGTACAAAATCGGGGTGGTTTGTGGCGCTTTCGCTTT
TTGTGGAGATAGTGGGTGGGTTCTGGGAGAGCATTACCAAAGTGATCCTTAGTGGCGTTGGAACT
TGGCCGCTACAGGTGTCAAAATGAGTCTTCAAGTGGCTAATTATTGCTGAGACAGGGCTGCGAAC
CCGAGTGTGATTTTTCAACTCAAAAACGATGGTGAAAAGAAAGCAACCGAGAGTGATGGGGTTGA
TTTTGTGTAGACGATGAGATGACAGAGATGAGAGAGATGGCCTTG
Right flanking sequence: Indices 49981 -- 50480
GTAGGTTGAGGCCTCGCTTAATGGGATGCGACGCTACGGCGTAGAGACCGATCCTGTGAGGCGAG
ACTGTTCCTGTAAGGCAACTGATCCTGTGAGGCGAAACTTTAAATTTGCGAGGTCTTAACCACCA
GTGTAGCTGATCAAAAGGATGCGGATGGTGGTTGTTCCGCTCGAATGGGTAATCCAAGAAGCACA
TCTTTAGGAGTCTAACCATTGATTCTTGTTTCTTTAAGTTCCGATGCCCTCTACAACCACCACAC
CACTAAGCTCTACACACCAGTCTGCTGGATCGAAGCCTCAATTCTTTCGAGAACTTCCTCGCAGT
CCTTCGGTAACTTCCTCTCCCTTATCACCTATCTCCATCTACATCCCACCCAAAACTCATTCCTA
TATTCCTTCCACTATCTTCCTATTCTTCCTATTCTTCCTATTCTTCCTTCATCCTATGCTTCACA
ATTCAATCAAAGACTCGGGCTCGTACCGCGACCCCGCGGTGTGCC
Found at i:50054 original size:19 final size:18
Alignment explanation
Indices: 50030--50081 Score: 70
Period size: 17 Copynumber: 2.9 Consensus size: 18
50020 CGTAGAGACC
50030 GATCCTGTGAGGCGAGACT
1 GATCCTGTGAGGCGA-ACT
* *
50049 GTTCCTGTAAGGC-AACT
1 GATCCTGTGAGGCGAACT
50066 GATCCTGTGAGGCGAA
1 GATCCTGTGAGGCGAA
50082 ACTTTAAATT
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
17 14 0.50
18 3 0.11
19 11 0.39
ACGTcount: A:0.23, C:0.21, G:0.33, T:0.23
Consensus pattern (18 bp):
GATCCTGTGAGGCGAACT
Left flanking sequence: Indices 49530 -- 50029
GGTTACGTGGGTCGTTCTAATTGCTCACTTGTCTTGTGGCTATGCACCCCTTTAGAGGCGGACGC
TAATCTTACATATTGTTGCGCACACTGAATCATGTTGCAGGTTAGGGTCGAGACCTAAGTGGGGG
CGGTACAAAATCGGGGTGGTTTGTGGCGCTTTCGCTTTTTGTGGAGATAGTGGGTGGGTTCTGGG
AGAGCATTACCAAAGTGATCCTTAGTGGCGTTGGAACTTGGCCGCTACAGGTGTCAAAATGAGTC
TTCAAGTGGCTAATTATTGCTGAGACAGGGCTGCGAACCCGAGTGTGATTTTTCAACTCAAAAAC
GATGGTGAAAAGAAAGCAACCGAGAGTGATGGGGTTGATTTTGTGTAGACGATGAGATGACAGAG
ATGAGAGAGATGGCCTTGGCTGTCAGGCGTTGCTGTCAGACGTGGCTGACAGGCGTTCTGTGTAG
GTTGAGGCCTCGCTTAATGGGATGCGACGCTACGGCGTAGAGACC
Right flanking sequence: Indices 50082 -- 50581
ACTTTAAATTTGCGAGGTCTTAACCACCAGTGTAGCTGATCAAAAGGATGCGGATGGTGGTTGTT
CCGCTCGAATGGGTAATCCAAGAAGCACATCTTTAGGAGTCTAACCATTGATTCTTGTTTCTTTA
AGTTCCGATGCCCTCTACAACCACCACACCACTAAGCTCTACACACCAGTCTGCTGGATCGAAGC
CTCAATTCTTTCGAGAACTTCCTCGCAGTCCTTCGGTAACTTCCTCTCCCTTATCACCTATCTCC
ATCTACATCCCACCCAAAACTCATTCCTATATTCCTTCCACTATCTTCCTATTCTTCCTATTCTT
CCTATTCTTCCTTCATCCTATGCTTCACAATTCAATCAAAGACTCGGGCTCGTACCGCGACCCCG
CGGTGTGCCGGGACCCGGCCGTATTGTTCGCCAGAAGCTCGGGGAACTTGTTCATGCTTGAAAAC
TCGTTGCCCAGCCCACCCGTAGCCTCCTCGGGCACCGCGGGGAAC
Found at i:50071 original size:17 final size:19
Alignment explanation
Indices: 50024--50080 Score: 73
Period size: 19 Copynumber: 3.1 Consensus size: 19
50014 CTACGGCGTA
*
50024 GAGACCGATCCTGTGAGGC
1 GAGACTGATCCTGTGAGGC
* *
50043 GAGACTGTTCCTGTAAGGC
1 GAGACTGATCCTGTGAGGC
50062 -A-ACTGATCCTGTGAGGC
1 GAGACTGATCCTGTGAGGC
50079 GA
1 GA
50081 AACTTTAAAT
Statistics
Matches: 32, Mismatches: 5, Indels: 3
0.80 0.12 0.08
Matches are distributed among these distances:
17 14 0.44
18 2 0.06
19 16 0.50
ACGTcount: A:0.23, C:0.23, G:0.33, T:0.21
Consensus pattern (19 bp):
GAGACTGATCCTGTGAGGC
Left flanking sequence: Indices 49524 -- 50023
GAGAGTGGTTACGTGGGTCGTTCTAATTGCTCACTTGTCTTGTGGCTATGCACCCCTTTAGAGGC
GGACGCTAATCTTACATATTGTTGCGCACACTGAATCATGTTGCAGGTTAGGGTCGAGACCTAAG
TGGGGGCGGTACAAAATCGGGGTGGTTTGTGGCGCTTTCGCTTTTTGTGGAGATAGTGGGTGGGT
TCTGGGAGAGCATTACCAAAGTGATCCTTAGTGGCGTTGGAACTTGGCCGCTACAGGTGTCAAAA
TGAGTCTTCAAGTGGCTAATTATTGCTGAGACAGGGCTGCGAACCCGAGTGTGATTTTTCAACTC
AAAAACGATGGTGAAAAGAAAGCAACCGAGAGTGATGGGGTTGATTTTGTGTAGACGATGAGATG
ACAGAGATGAGAGAGATGGCCTTGGCTGTCAGGCGTTGCTGTCAGACGTGGCTGACAGGCGTTCT
GTGTAGGTTGAGGCCTCGCTTAATGGGATGCGACGCTACGGCGTA
Right flanking sequence: Indices 50081 -- 50580
AACTTTAAATTTGCGAGGTCTTAACCACCAGTGTAGCTGATCAAAAGGATGCGGATGGTGGTTGT
TCCGCTCGAATGGGTAATCCAAGAAGCACATCTTTAGGAGTCTAACCATTGATTCTTGTTTCTTT
AAGTTCCGATGCCCTCTACAACCACCACACCACTAAGCTCTACACACCAGTCTGCTGGATCGAAG
CCTCAATTCTTTCGAGAACTTCCTCGCAGTCCTTCGGTAACTTCCTCTCCCTTATCACCTATCTC
CATCTACATCCCACCCAAAACTCATTCCTATATTCCTTCCACTATCTTCCTATTCTTCCTATTCT
TCCTATTCTTCCTTCATCCTATGCTTCACAATTCAATCAAAGACTCGGGCTCGTACCGCGACCCC
GCGGTGTGCCGGGACCCGGCCGTATTGTTCGCCAGAAGCTCGGGGAACTTGTTCATGCTTGAAAA
CTCGTTGCCCAGCCCACCCGTAGCCTCCTCGGGCACCGCGGGGAA
Found at i:50399 original size:9 final size:9
Alignment explanation
Indices: 50385--50418 Score: 68
Period size: 9 Copynumber: 3.8 Consensus size: 9
50375 CCTTCCACTA
50385 TCTTCCTAT
1 TCTTCCTAT
50394 TCTTCCTAT
1 TCTTCCTAT
50403 TCTTCCTAT
1 TCTTCCTAT
50412 TCTTCCT
1 TCTTCCT
50419 TCATCCTATG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 25 1.00
ACGTcount: A:0.09, C:0.35, G:0.00, T:0.56
Consensus pattern (9 bp):
TCTTCCTAT
Left flanking sequence: Indices 49885 -- 50384
GGGGTTGATTTTGTGTAGACGATGAGATGACAGAGATGAGAGAGATGGCCTTGGCTGTCAGGCGT
TGCTGTCAGACGTGGCTGACAGGCGTTCTGTGTAGGTTGAGGCCTCGCTTAATGGGATGCGACGC
TACGGCGTAGAGACCGATCCTGTGAGGCGAGACTGTTCCTGTAAGGCAACTGATCCTGTGAGGCG
AAACTTTAAATTTGCGAGGTCTTAACCACCAGTGTAGCTGATCAAAAGGATGCGGATGGTGGTTG
TTCCGCTCGAATGGGTAATCCAAGAAGCACATCTTTAGGAGTCTAACCATTGATTCTTGTTTCTT
TAAGTTCCGATGCCCTCTACAACCACCACACCACTAAGCTCTACACACCAGTCTGCTGGATCGAA
GCCTCAATTCTTTCGAGAACTTCCTCGCAGTCCTTCGGTAACTTCCTCTCCCTTATCACCTATCT
CCATCTACATCCCACCCAAAACTCATTCCTATATTCCTTCCACTA
Right flanking sequence: Indices 50419 -- 50918
TCATCCTATGCTTCACAATTCAATCAAAGACTCGGGCTCGTACCGCGACCCCGCGGTGTGCCGGG
ACCCGGCCGTATTGTTCGCCAGAAGCTCGGGGAACTTGTTCATGCTTGAAAACTCGTTGCCCAGC
CCACCCGTAGCCTCCTCGGGCACCGCGGGGAACGCCGCCATCAGCGACAATTGGCCTTGGGGAAC
AGGGCCCAGGTTGTTGATGGCCGCCAAGTCGGCGTCGTCGTCGTCCAACGCGGGGAACCGCTCGG
TGGCGTTCTGGAGCATCTCCGTCGTCAGCTGCACCGGCAAGTGTGCCAGATCGGGGCCTCCGGGC
GTCAAGTTGGTGGCGTCGTCGTCGTCGGGAAGCCGCTCGTGCTGCGGGTAGTACAGCGGCTCCAG
AATCAGCCCACGGGTGTTGCGGACCTGGGGAAGCTGCGGGTCGCGGGTGTCGTTGCTGGTGGGGT
ACGGGGACAACTCCGGTCTCGCCTGGGGCGGCCCTTGGCTGGGCT
Found at i:51180 original size:21 final size:21
Alignment explanation
Indices: 51155--51209 Score: 101
Period size: 21 Copynumber: 2.6 Consensus size: 21
51145 AGCGTGCGAC
*
51155 CCCGTGCTGTGGCCCTGGGGA
1 CCCGTGTTGTGGCCCTGGGGA
51176 CCCGTGTTGTGGCCCTGGGGA
1 CCCGTGTTGTGGCCCTGGGGA
51197 CCCGTGTTGTGGC
1 CCCGTGTTGTGGC
51210 TGGGACCGTG
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 33 1.00
ACGTcount: A:0.04, C:0.31, G:0.42, T:0.24
Consensus pattern (21 bp):
CCCGTGTTGTGGCCCTGGGGA
Left flanking sequence: Indices 50655 -- 51154
CGTCCAACGCGGGGAACCGCTCGGTGGCGTTCTGGAGCATCTCCGTCGTCAGCTGCACCGGCAAG
TGTGCCAGATCGGGGCCTCCGGGCGTCAAGTTGGTGGCGTCGTCGTCGTCGGGAAGCCGCTCGTG
CTGCGGGTAGTACAGCGGCTCCAGAATCAGCCCACGGGTGTTGCGGACCTGGGGAAGCTGCGGGT
CGCGGGTGTCGTTGCTGGTGGGGTACGGGGACAACTCCGGTCTCGCCTGGGGCGGCCCTTGGCTG
GGCTGGTTCGGGTTGGAGCCCTGGTTGGGGTCGTAGGGGTAGTCTTGCGGGTACCCCAGATGCTG
TTGTTGTTGCTTGGGCTGGCTGGCCAGACGCCCGCCCGTGAGCTGTGCCGGGATGTAGCTGCGGT
CTTCCTCCTGGCGGGGAGCAGCAGCTGGCGGGGCCGGTGCGGGAGGCACCAGGTACGAGTAGTCC
TGCGACGGCGGGTAGCCGGGCACAGACCCATGGGGAGCGTGCGAC
Right flanking sequence: Indices 51210 -- 51709
TGGGACCGTGGCCCGTGCCGTGCTGGCCCATACCTTGCGGAGGACCGGTCTCTTGCGGTCGGCCG
TAGCCATAGTCCTGGTAGCCCGTGTTCTGGCCCAGCGCCTGGCCCGGGTACAGAATCTGGTGCTG
GCCGTACACCAGGTTGAGCTTGGCCTCCAAAAACTCGTCGTACATCCGCACCGCCGTCAGGATCT
TGTTGTTCAACTCGTTGAACTGGTCGTACCGCTCGATGCTGTTGCGCAACAGCCGGTTGACCTTG
GGCTTGAGCGTGGTCACCTTGGCGTGCAACTCGTTCAAGTTCAGGTCGTACATGATGTTGGCGCG
CTTCTTGTCGTCGCTCTTGATGGTGGTCATCATGGTGATGAACAAGTTGATCTTTTCCTCGTCCT
GCTGCGAGAGATCGAGGGGTGGCGGTTTGGGCTTGGGCTGCATCGCGGGGGCCTGGGGCCGTGCC
AACGGCTGCAGGTACCCGTAGTGGGCGTACGCGGGCTGGTCGGGC
Found at i:57660 original size:21 final size:21
Alignment explanation
Indices: 57638--57703 Score: 80
Period size: 21 Copynumber: 3.2 Consensus size: 21
57628 CATTGTCACT
* *
57638 AGTCCTTCCCAATTTTCCACT
1 AGTCCTTCCCACTTTTCCACG
*
57659 AGT-CTTTCCACTTTTCCACG
1 AGTCCTTCCCACTTTTCCACG
* *
57679 AGTCTTTCTCACTTTTCCACG
1 AGTCCTTCCCACTTTTCCACG
57700 AGTC
1 AGTC
57704 TTCTAGATCT
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
20 17 0.45
21 21 0.55
ACGTcount: A:0.17, C:0.35, G:0.09, T:0.39
Consensus pattern (21 bp):
AGTCCTTCCCACTTTTCCACG
Left flanking sequence: Indices 57138 -- 57637
CTAAAAACCCTAAATAGATTTACGGCCGCGTCCACCTACCCAGGACCCCCAGGCGACGCGCCACG
ACTTCTAGAAGCACTGCGCCTCGACGATCGTTCGAGGGCCTTCCGAAAACAGAGTGGTCCGCTTG
GGGTTTTCTCGTCTAGCGTTCGTTTTTACGACACTAATTTGAGGTGTGATCTATTTACGTTTAGT
CTGCTTTCGACCTGGGCTTCAGGCGGGCTGTCGAGAAGGGTGTTGTATTTTGTCTGATCTGTTCC
TCGTCTAGCCTCGCCTATTCCCTGGTCTCTGGCCCGGTCTTCTGTTGTCTTGTATTTTTTGGCTG
GTGTTATTCTCTGGTGTTATTTCTCGATATTATCTCGCTCTGGTTCCGGTCCGCCTGATGTCTGG
GCTGTCTACTCTTCTTGGGCCGTGCCTCCATGGTCTTTTCTCGACGCCTCTTCCAATGGTATTCT
GGTTCCTGGTCTTTTTTCCTCTAACCTCAATGGTTCATTGTCACT
Right flanking sequence: Indices 57704 -- 58203
TTCTAGATCTCTACCACTCGTCTCCTCTCGTCACCTCTCGTCTCCTCTCGTCACTCCTACCTCCA
CCACGTCTCCCCTCACTCTACACTCAGCCTATAATACAGTATCCTTTCCAAAACAAACCTAAATA
ACCCAGTCACAGCATGAAGAACGCAAACGACGACACACCAAGCACGCCCACCGCAGCCCACCACG
CCTTCAGGAGCCCCGCGTGCGGCTCGCGCACTGCGTTGGTGCGGTACTGGTTCTCCAACAGCCGG
CGCACCCGCTGGCGCAAGCTGGGGTCCAGACGCTTGTCCTTCTTGCCGTCGCCCAGCTCGGACGG
CTCGGCAGTGTTGGTGGGATTGAGGGTCCCGGTGGGCAACATCATCGGCGGCGAGTACGCCAAGT
AGAGCGGCTGCATTTTCAGCCCGTCAAACTGGAAAATCTGGAGCGCCTTTTTCCCGTGGTACGGG
TCGATGTACACCTGGAACGTCTTGAACCAGGTGGGCTGGTGGTAG
Found at i:57704 original size:21 final size:20
Alignment explanation
Indices: 57650--57705 Score: 94
Period size: 21 Copynumber: 2.8 Consensus size: 20
57640 TCCTTCCCAA
*
57650 TTTTCCACTAGTCTTTCCAC
1 TTTTCCACGAGTCTTTCCAC
57670 TTTTCCACGAGTCTTTCTCAC
1 TTTTCCACGAGTCTTTC-CAC
57691 TTTTCCACGAGTCTT
1 TTTTCCACGAGTCTT
57706 CTAGATCTCT
Statistics
Matches: 34, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
20 16 0.47
21 18 0.53
ACGTcount: A:0.14, C:0.32, G:0.09, T:0.45
Consensus pattern (20 bp):
TTTTCCACGAGTCTTTCCAC
Left flanking sequence: Indices 57150 -- 57649
AATAGATTTACGGCCGCGTCCACCTACCCAGGACCCCCAGGCGACGCGCCACGACTTCTAGAAGC
ACTGCGCCTCGACGATCGTTCGAGGGCCTTCCGAAAACAGAGTGGTCCGCTTGGGGTTTTCTCGT
CTAGCGTTCGTTTTTACGACACTAATTTGAGGTGTGATCTATTTACGTTTAGTCTGCTTTCGACC
TGGGCTTCAGGCGGGCTGTCGAGAAGGGTGTTGTATTTTGTCTGATCTGTTCCTCGTCTAGCCTC
GCCTATTCCCTGGTCTCTGGCCCGGTCTTCTGTTGTCTTGTATTTTTTGGCTGGTGTTATTCTCT
GGTGTTATTTCTCGATATTATCTCGCTCTGGTTCCGGTCCGCCTGATGTCTGGGCTGTCTACTCT
TCTTGGGCCGTGCCTCCATGGTCTTTTCTCGACGCCTCTTCCAATGGTATTCTGGTTCCTGGTCT
TTTTTCCTCTAACCTCAATGGTTCATTGTCACTAGTCCTTCCCAA
Right flanking sequence: Indices 57706 -- 58205
CTAGATCTCTACCACTCGTCTCCTCTCGTCACCTCTCGTCTCCTCTCGTCACTCCTACCTCCACC
ACGTCTCCCCTCACTCTACACTCAGCCTATAATACAGTATCCTTTCCAAAACAAACCTAAATAAC
CCAGTCACAGCATGAAGAACGCAAACGACGACACACCAAGCACGCCCACCGCAGCCCACCACGCC
TTCAGGAGCCCCGCGTGCGGCTCGCGCACTGCGTTGGTGCGGTACTGGTTCTCCAACAGCCGGCG
CACCCGCTGGCGCAAGCTGGGGTCCAGACGCTTGTCCTTCTTGCCGTCGCCCAGCTCGGACGGCT
CGGCAGTGTTGGTGGGATTGAGGGTCCCGGTGGGCAACATCATCGGCGGCGAGTACGCCAAGTAG
AGCGGCTGCATTTTCAGCCCGTCAAACTGGAAAATCTGGAGCGCCTTTTTCCCGTGGTACGGGTC
GATGTACACCTGGAACGTCTTGAACCAGGTGGGCTGGTGGTAGCG
Found at i:57735 original size:10 final size:10
Alignment explanation
Indices: 57720--57755 Score: 63
Period size: 10 Copynumber: 3.6 Consensus size: 10
57710 ATCTCTACCA
57720 CTCGTCTCCT
1 CTCGTCTCCT
*
57730 CTCGTCACCT
1 CTCGTCTCCT
57740 CTCGTCTCCT
1 CTCGTCTCCT
57750 CTCGTC
1 CTCGTC
57756 ACTCCTACCT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
10 24 1.00
ACGTcount: A:0.03, C:0.50, G:0.11, T:0.36
Consensus pattern (10 bp):
CTCGTCTCCT
Left flanking sequence: Indices 57220 -- 57719
GCCTCGACGATCGTTCGAGGGCCTTCCGAAAACAGAGTGGTCCGCTTGGGGTTTTCTCGTCTAGC
GTTCGTTTTTACGACACTAATTTGAGGTGTGATCTATTTACGTTTAGTCTGCTTTCGACCTGGGC
TTCAGGCGGGCTGTCGAGAAGGGTGTTGTATTTTGTCTGATCTGTTCCTCGTCTAGCCTCGCCTA
TTCCCTGGTCTCTGGCCCGGTCTTCTGTTGTCTTGTATTTTTTGGCTGGTGTTATTCTCTGGTGT
TATTTCTCGATATTATCTCGCTCTGGTTCCGGTCCGCCTGATGTCTGGGCTGTCTACTCTTCTTG
GGCCGTGCCTCCATGGTCTTTTCTCGACGCCTCTTCCAATGGTATTCTGGTTCCTGGTCTTTTTT
CCTCTAACCTCAATGGTTCATTGTCACTAGTCCTTCCCAATTTTCCACTAGTCTTTCCACTTTTC
CACGAGTCTTTCTCACTTTTCCACGAGTCTTCTAGATCTCTACCA
Right flanking sequence: Indices 57756 -- 58255
ACTCCTACCTCCACCACGTCTCCCCTCACTCTACACTCAGCCTATAATACAGTATCCTTTCCAAA
ACAAACCTAAATAACCCAGTCACAGCATGAAGAACGCAAACGACGACACACCAAGCACGCCCACC
GCAGCCCACCACGCCTTCAGGAGCCCCGCGTGCGGCTCGCGCACTGCGTTGGTGCGGTACTGGTT
CTCCAACAGCCGGCGCACCCGCTGGCGCAAGCTGGGGTCCAGACGCTTGTCCTTCTTGCCGTCGC
CCAGCTCGGACGGCTCGGCAGTGTTGGTGGGATTGAGGGTCCCGGTGGGCAACATCATCGGCGGC
GAGTACGCCAAGTAGAGCGGCTGCATTTTCAGCCCGTCAAACTGGAAAATCTGGAGCGCCTTTTT
CCCGTGGTACGGGTCGATGTACACCTGGAACGTCTTGAACCAGGTGGGCTGGTGGTAGCGCACGT
ACTTCAGTTTGTCAGGAGTGTCGCCACACGGCTCGCTCAACAATT
Found at i:57745 original size:20 final size:20
Alignment explanation
Indices: 57720--57757 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
57710 ATCTCTACCA
57720 CTCGTCTCCTCTCGTCACCT
1 CTCGTCTCCTCTCGTCACCT
57740 CTCGTCTCCTCTCGTCAC
1 CTCGTCTCCTCTCGTCAC
57758 TCCTACCTCC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.05, C:0.50, G:0.11, T:0.34
Consensus pattern (20 bp):
CTCGTCTCCTCTCGTCACCT
Left flanking sequence: Indices 57220 -- 57719
GCCTCGACGATCGTTCGAGGGCCTTCCGAAAACAGAGTGGTCCGCTTGGGGTTTTCTCGTCTAGC
GTTCGTTTTTACGACACTAATTTGAGGTGTGATCTATTTACGTTTAGTCTGCTTTCGACCTGGGC
TTCAGGCGGGCTGTCGAGAAGGGTGTTGTATTTTGTCTGATCTGTTCCTCGTCTAGCCTCGCCTA
TTCCCTGGTCTCTGGCCCGGTCTTCTGTTGTCTTGTATTTTTTGGCTGGTGTTATTCTCTGGTGT
TATTTCTCGATATTATCTCGCTCTGGTTCCGGTCCGCCTGATGTCTGGGCTGTCTACTCTTCTTG
GGCCGTGCCTCCATGGTCTTTTCTCGACGCCTCTTCCAATGGTATTCTGGTTCCTGGTCTTTTTT
CCTCTAACCTCAATGGTTCATTGTCACTAGTCCTTCCCAATTTTCCACTAGTCTTTCCACTTTTC
CACGAGTCTTTCTCACTTTTCCACGAGTCTTCTAGATCTCTACCA
Right flanking sequence: Indices 57758 -- 58257
TCCTACCTCCACCACGTCTCCCCTCACTCTACACTCAGCCTATAATACAGTATCCTTTCCAAAAC
AAACCTAAATAACCCAGTCACAGCATGAAGAACGCAAACGACGACACACCAAGCACGCCCACCGC
AGCCCACCACGCCTTCAGGAGCCCCGCGTGCGGCTCGCGCACTGCGTTGGTGCGGTACTGGTTCT
CCAACAGCCGGCGCACCCGCTGGCGCAAGCTGGGGTCCAGACGCTTGTCCTTCTTGCCGTCGCCC
AGCTCGGACGGCTCGGCAGTGTTGGTGGGATTGAGGGTCCCGGTGGGCAACATCATCGGCGGCGA
GTACGCCAAGTAGAGCGGCTGCATTTTCAGCCCGTCAAACTGGAAAATCTGGAGCGCCTTTTTCC
CGTGGTACGGGTCGATGTACACCTGGAACGTCTTGAACCAGGTGGGCTGGTGGTAGCGCACGTAC
TTCAGTTTGTCAGGAGTGTCGCCACACGGCTCGCTCAACAATTGG
Found at i:59093 original size:13 final size:12
Alignment explanation
Indices: 59068--59120 Score: 67
Period size: 13 Copynumber: 4.5 Consensus size: 12
59058 AAAGCTCCCG
59068 AGGACAG-TAGT
1 AGGACAGATAGT
59079 AGGACTAGATAGT
1 AGGAC-AGATAGT
59092 AGG--AGATAGT
1 AGGACAGATAGT
59102 AGGACAAGATAGT
1 AGGAC-AGATAGT
59115 AGGACA
1 AGGACA
59121 CGCTGTGGAT
Statistics
Matches: 37, Mismatches: 0, Indels: 9
0.80 0.00 0.20
Matches are distributed among these distances:
10 10 0.27
11 5 0.14
12 3 0.08
13 19 0.51
ACGTcount: A:0.42, C:0.08, G:0.34, T:0.17
Consensus pattern (12 bp):
AGGACAGATAGT
Left flanking sequence: Indices 58568 -- 59067
CAGCGACCACCAAACTCGTCCAAAACAGGGGGTTCATAGTCTTTGTTGCGGCTTGATCAAGATCA
AATTTTAATGCGAACGAGGCGCAAGCCGTGCAGGACAGCTGGCTGCTTGGCATGGTGGGGGGGCC
TACGTGGGCTGTGCGGGCCAGTGGAGCGCGGAAGGGGTTTCTGGTTGAGAGATTGGTGGTTAGAC
GGGGTTGGGACCCGATTTTTCCCTGCTTTTTTGAAGGGTTTCGCCCGTGGTGGCTTGACAGTCTT
GCCTACGCTTTCACCTCCTTCTGCTTACGTAACAAAGTTAAAAGCAACGCGTCAGGGGACACTGC
CAGACCGCGATCCTAATAATAGAGCAGTGGACCCGGTGCGGGTACGAGTGCGGGTGGCTCGACGC
GACGGAGGGGGCGCCGTGGCGGTGGCAAGGCGGTGCACCCGGGACGGTGGCGTGGCTAGTTCCGC
CAGCGCTACGTCCGGCTAGTGCAAGGGGTAGTCACAAAGCTCCCG
Right flanking sequence: Indices 59121 -- 59620
CGCTGTGGATCCTGATGTGCCAATGAGCCAATAAGCCAGTAAGGTGTACCAGAGGAAGCCAAGGA
TGCCAAGAGGCCGCTAGTGGCCACTACGTCTCTCGACCTGCCCGCTGCCTCCACCTCGGTTCGGT
TACACAAATGACTGTCCATGGTGACAGCAGTGTCGCGTGCGTGTCGTGGTGCCAATATTTTTCCG
GGCACAGGGATGAACGCTACGATGAGCTCCGTAAAGGCGTACTACGACAGCGGTGCCACTGCCTC
CGCTGCTGATTCCTTGTTCCATCATTTTAGGAAGGGTTCGGTGTGCATATTGCCGAGCGGGTCTC
AACCCGATTTTTGTCTTGTGGGGTTTATTTTGTTTGTCTTGTGTTGCAACCATTTTGTCTTGTGA
GGAGTGAGAGAACGATGGATGCGTGTCAGTAGCTGGCGGCACAAAATACCGTGCCGAGACCTTTG
GGGGCACCTTTACCCGATATCGAAGCCTTCGGGCGAGTGAGCGCC
Found at i:59102 original size:23 final size:23
Alignment explanation
Indices: 59075--59118 Score: 79
Period size: 23 Copynumber: 1.9 Consensus size: 23
59065 CCGAGGACAG
*
59075 TAGTAGGACTAGATAGTAGGAGA
1 TAGTAGGACAAGATAGTAGGAGA
59098 TAGTAGGACAAGATAGTAGGA
1 TAGTAGGACAAGATAGTAGGA
59119 CACGCTGTGG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.41, C:0.05, G:0.34, T:0.20
Consensus pattern (23 bp):
TAGTAGGACAAGATAGTAGGAGA
Left flanking sequence: Indices 58575 -- 59074
CACCAAACTCGTCCAAAACAGGGGGTTCATAGTCTTTGTTGCGGCTTGATCAAGATCAAATTTTA
ATGCGAACGAGGCGCAAGCCGTGCAGGACAGCTGGCTGCTTGGCATGGTGGGGGGGCCTACGTGG
GCTGTGCGGGCCAGTGGAGCGCGGAAGGGGTTTCTGGTTGAGAGATTGGTGGTTAGACGGGGTTG
GGACCCGATTTTTCCCTGCTTTTTTGAAGGGTTTCGCCCGTGGTGGCTTGACAGTCTTGCCTACG
CTTTCACCTCCTTCTGCTTACGTAACAAAGTTAAAAGCAACGCGTCAGGGGACACTGCCAGACCG
CGATCCTAATAATAGAGCAGTGGACCCGGTGCGGGTACGAGTGCGGGTGGCTCGACGCGACGGAG
GGGGCGCCGTGGCGGTGGCAAGGCGGTGCACCCGGGACGGTGGCGTGGCTAGTTCCGCCAGCGCT
ACGTCCGGCTAGTGCAAGGGGTAGTCACAAAGCTCCCGAGGACAG
Right flanking sequence: Indices 59119 -- 59618
CACGCTGTGGATCCTGATGTGCCAATGAGCCAATAAGCCAGTAAGGTGTACCAGAGGAAGCCAAG
GATGCCAAGAGGCCGCTAGTGGCCACTACGTCTCTCGACCTGCCCGCTGCCTCCACCTCGGTTCG
GTTACACAAATGACTGTCCATGGTGACAGCAGTGTCGCGTGCGTGTCGTGGTGCCAATATTTTTC
CGGGCACAGGGATGAACGCTACGATGAGCTCCGTAAAGGCGTACTACGACAGCGGTGCCACTGCC
TCCGCTGCTGATTCCTTGTTCCATCATTTTAGGAAGGGTTCGGTGTGCATATTGCCGAGCGGGTC
TCAACCCGATTTTTGTCTTGTGGGGTTTATTTTGTTTGTCTTGTGTTGCAACCATTTTGTCTTGT
GAGGAGTGAGAGAACGATGGATGCGTGTCAGTAGCTGGCGGCACAAAATACCGTGCCGAGACCTT
TGGGGGCACCTTTACCCGATATCGAAGCCTTCGGGCGAGTGAGCG
Found at i:61815 original size:32 final size:32
Alignment explanation
Indices: 61760--61890 Score: 181
Period size: 32 Copynumber: 4.1 Consensus size: 32
61750 TCTCTGATCT
*
61760 CTCCAGTGATCGTCTAACTCTGATCTCCAGTCC
1 CTCCAGCGATCGTCT-ACTCTGATCTCCAGTCC
* * * **
61793 GTACAGTGATCAACTACTCTGATCTCCAGTCC
1 CTCCAGCGATCGTCTACTCTGATCTCCAGTCC
*
61825 CTCCAGCGATCGTCTACTCTGATTTCCAGTCC
1 CTCCAGCGATCGTCTACTCTGATCTCCAGTCC
*
61857 CTCCAGCGATCGTCTACTCTGATCTCCGGTCC
1 CTCCAGCGATCGTCTACTCTGATCTCCAGTCC
61889 CT
1 CT
61891 TTTGTGTTCG
Statistics
Matches: 86, Mismatches: 12, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
32 75 0.87
33 11 0.13
ACGTcount: A:0.18, C:0.37, G:0.16, T:0.30
Consensus pattern (32 bp):
CTCCAGCGATCGTCTACTCTGATCTCCAGTCC
Left flanking sequence: Indices 61260 -- 61759
GTTAGATCTCCATCAACCCACTCCCAAAGCGGGTGGCGCCAGATGGACCCACACTAATGGCTTCC
GTTAACGGAGATCTTCCATGGTGCGATGTGGCGATGGTACCATGCCCGGGAGATACGTATTTCAC
CGCTAAGCCGTTCCAGGGACAAGCGACGCGTCGCCTGGCCAGGGGTGGGAATAGCCACGGATGTG
ATTTTGGTAGTCCGGGTAGTTTCCTCTTGTTTGGGATGATCTCTCAGTTGTGCTAAGTGTTATTG
ACGAACGCTTTGACGAGTGTTCGATCGTGGTCGCCTACGCGTCTCATTGAACGTGTTAGGCAGTC
ATCCCACCATTGATCGGGCTCCTTTGATCTAGGCGAGTGGCTACAATGATGTCGATCTCAGAATC
GCGATCGTCTAGCTTGATCTCCCTCGTGTAGTGATCTTTGTTGTCGTGCTTGATCTACTTCTCCA
GTGTTTGTTTAGATTTTCAGTTTTTCCACTTATCGTCTCTGATCT
Right flanking sequence: Indices 61891 -- 62390
TTTGTGTTCGTGATCCTCTCTGATCTCCATCTTGCAGCCTTTCCACCGACCTCTGATCTCTACGC
GAATCTACTTCGACGCGTCCTTCACGTCCCTACAAGTCTCCTACCCTACACCCTACACCCTCTAC
CCACACCCTTTTCTACCCATTTCTTCCCTACGCCCTATTTCCCTTCCTACTCTACCTGTTCGTTA
TGACCGTTGATTAACGCTATGTGAGGAGATGCTAAAATTAACCTTTGTCGTTAAGGGAAGCCCTT
CGAGGGAATATGTAAAAAAACGTGAGATGAACTGAAGTGTTCGTGGCGCGTTTGCTGGCAAACGC
CTATGGATGCTTGGTGAAAATGGGAGAGTCGTTCTCCAGGAGCGGCGTGCCCATGGCGTGCCGCC
GCAGGTAGTCGTACTCAAACAAGTCGTTAGGCTGCCCGCACTCGTCGCAGCCTTGCAGCGACGCC
AGCGAGTTGAGCAGCGTCAGCAGGTAGTGGTGGTGGTGCGGGTGC
Found at i:64016 original size:11 final size:11
Alignment explanation
Indices: 64000--64025 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
63990 CAGTTGGGAG
64000 GGGTTGCGGTC
1 GGGTTGCGGTC
64011 GGGTTGCGGTC
1 GGGTTGCGGTC
64022 GGGT
1 GGGT
64026 GGCTGGTGTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.00, C:0.15, G:0.58, T:0.27
Consensus pattern (11 bp):
GGGTTGCGGTC
Left flanking sequence: Indices 63500 -- 63999
AAACGGCAAGATTTTGAGCCGCACCGCCATTTTGAGCAAGAAGTCAATCAACTTGAGACGGATCG
GCGGCGTGAGATACGGCTGCTGCTTGTACAACTCGACGTTGGGGCGGTTTTGCTCGATGAGCCCC
ATCATCGTCCCGTAGATGTCGTCGTCGTACTCGTCCACCACCGCCTGGTGGTGGTACACCTCGTG
GTCGTAGAGCGCCGTCGGGTACTCGTACTGGAAGAATCGCGCTTTCATGGACACGGCCTGGCAAC
GAGAGGGTGGGGCTCTCGGGTTGGGCGCCAAACTCTATATATATGGGACAATCCCCGTGCTGTGG
GCACCCGCCGCCGCCTAAAAAATTTCTGTCGCCAAAAGGAATAATATTTTTATTTTGTGGGCCCG
CGGCGGCACAAAAAATATCGTCCAATTTGTAATTTCAATCCTCACAATAGGCAAACTGGTGCTGA
GGCGCATATCTGACGAGATTGGCACCACCCAGGCTCAGTTGGGAG
Right flanking sequence: Indices 64026 -- 64525
GGCTGGTGTGTGGTTCGGGGGTCGGGGGTGGCTTGGGGGTGGGTCGTGGAAACGGCGCCCGTTGG
TTTTCAGCGGCGGGTTTGCCTGCGGTTGCAGTAACGGCCTGACACTCGTCAGCGACACTCGTGCT
ATCGGGATCTCCCCTTGCTTCTCGTCAACATACCCGGGTGTGTGCAGGACGAGAATGGTGAGGAC
GATCAGGCTCAGGACGGCCAGATGAGAGGAACACGCACGGGCGACACGCGGTGCGGAGTTTGGAG
CCAGGCAGTAGTGCTAGTTTAGTGGGCTGGGGTTAGAACCCTGCGGTGCGGGCGAGCGGGGGTGC
ATGATGTGTCTGTGTAAGGTGGATTTGTGGTGTGGATGGTGGTGAGAGTGGCAGGTGGTGAGGAT
GAGATGTCAGTGGTGGTGGAATGGAAAACGGGTGGTGGTGAGAGTGGTGGTGAGGGTGGTGGTGA
GGGTAGTGATGGTGGTTTACTAGGGTAGAGTGGAGGCAGTGCTGG
Found at i:64482 original size:12 final size:12
Alignment explanation
Indices: 64445--64484 Score: 71
Period size: 12 Copynumber: 3.3 Consensus size: 12
64435 AATGGAAAAC
64445 GGGTGGTGGTGA
1 GGGTGGTGGTGA
*
64457 GAGTGGTGGTGA
1 GGGTGGTGGTGA
64469 GGGTGGTGGTGA
1 GGGTGGTGGTGA
64481 GGGT
1 GGGT
64485 AGTGATGGTG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
12 26 1.00
ACGTcount: A:0.10, C:0.00, G:0.65, T:0.25
Consensus pattern (12 bp):
GGGTGGTGGTGA
Left flanking sequence: Indices 63945 -- 64444
CTGGTGCTGAGGCGCATATCTGACGAGATTGGCACCACCCAGGCTCAGTTGGGAGGGGTTGCGGT
CGGGTTGCGGTCGGGTGGCTGGTGTGTGGTTCGGGGGTCGGGGGTGGCTTGGGGGTGGGTCGTGG
AAACGGCGCCCGTTGGTTTTCAGCGGCGGGTTTGCCTGCGGTTGCAGTAACGGCCTGACACTCGT
CAGCGACACTCGTGCTATCGGGATCTCCCCTTGCTTCTCGTCAACATACCCGGGTGTGTGCAGGA
CGAGAATGGTGAGGACGATCAGGCTCAGGACGGCCAGATGAGAGGAACACGCACGGGCGACACGC
GGTGCGGAGTTTGGAGCCAGGCAGTAGTGCTAGTTTAGTGGGCTGGGGTTAGAACCCTGCGGTGC
GGGCGAGCGGGGGTGCATGATGTGTCTGTGTAAGGTGGATTTGTGGTGTGGATGGTGGTGAGAGT
GGCAGGTGGTGAGGATGAGATGTCAGTGGTGGTGGAATGGAAAAC
Right flanking sequence: Indices 64485 -- 64984
AGTGATGGTGGTTTACTAGGGTAGAGTGGAGGCAGTGCTGGTGTAGTGTGAGCGGGGGTAGGGGT
ACTCTCGTGCTGTACGTCCTGTGACGCAAACGACTTCCACTGCCCTCATCTCGCCATTTGACATG
TCTCAGCTCACTCGTCGGCTCGGAGACACGCGAGGCCACAAACCTCCCACACCCTCTCAGGGGTG
CTGTTTGTGCTACTTGGCTAGAGAACCTCTGCTAATGGTACATATGGTACCCCTCACATGACCAT
AGCGATGAGGCACAGAGATGAAGTGGTGAAGAAGGTCAAAGGTCGTAAAACTGATCCACATCGCG
ATCAACGTAGACCACAAATCCTGGCGGCCGTAGACCTCTCTCCCCGCCAGACAACGTGGCGCTCC
CGCTTCGCCCCTCCCGCTTTGTGTCACTTAGGTTTGTACTGGTTCCCCTATCCGCAGCCCTTCGT
CCGCTTTGGACCAAAAGACGGACCAAGTGCGACCGCCCGAGCAGC
Found at i:66133 original size:16 final size:16
Alignment explanation
Indices: 66084--66126 Score: 54
Period size: 16 Copynumber: 2.8 Consensus size: 16
66074 TGTTCTAGTG
*
66084 GCTAATGCAACC-GAA
1 GCTAATGCAACCAAAA
*
66099 -CCAATGCAACCAAAA
1 GCTAATGCAACCAAAA
66114 GCTAATGCAACCA
1 GCTAATGCAACCA
66127 CAGGCTACGG
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
14 10 0.43
15 2 0.09
16 11 0.48
ACGTcount: A:0.44, C:0.30, G:0.14, T:0.12
Consensus pattern (16 bp):
GCTAATGCAACCAAAA
Left flanking sequence: Indices 65584 -- 66083
CGCGATCGCTCCGATGATCGTCGATGGATACCGGAGCTATTGTCAATCCAGCGGTGGTCTTGACG
GTCGTCAATCGCCGTGGCGCCACCCTCGATCGCTGCTATTGTTCGCTTACCATCGTGGTCGCGTC
AACCTGCTCCCATTTACCCGAGCTCCACGCACCACCTCGACGTGCCCGTTGACGCCCATCGTGGG
GCCCCACAGGCAGCGAGCGTCTCCGGCAGCGGACTACATAGCAATGCCGGTCTTTGCCGGATTTA
GGCGGCAAAGAAGTGTAAATAGCCTATATATGCCCTGTGGCGATGAAACCCAACATTCTCCGATA
GACGTCCACCACGACACCGGCTCGCTTAGCTCGCCTAGCCAATGGCACGATCCGCAGCCAATCGA
GGGCCCTCGCTCACCCTCGCCTATCTAGACGACCCGGTGATGAGTAGAAACTAGCGAGAACGCGG
TCAACCGTCCCAAGCGGGAATGTCTATTGTTTAGGTGTTCTAGTG
Right flanking sequence: Indices 66127 -- 66626
CAGGCTACGGGTTGAGGATGAGCAGTGATCCGTCCGCCGTACCCTAGTAGCGCAGTAGAGCCTAT
TTTTTGAATCATCTGTATAGCGCCTCCACGGTGGTGGCACGGTACAGTTTGCACGCTTCTTGGTG
CTACTGTGCGGTGTCACGTCGAATGGTCACAGTTAGTTCGGTACCGTTAGCCCACTGATAGATAG
TCCTACTATACGAATGGTTGTGCTATGCAACTAGATCCTCTATACGAATGTTTTGCTTCAGCTAG
TGCCACTGGGTGAATTTCCGTGCATTCCGCTGCACACTCAACTTCACGGCACACGTTGACATGGG
TGACACTGTGCGTTTCGTGCCACCACCGGTGTCTTGAGCCACCCCCTTCCCTCGCTCTCGTCTAG
CTCCACTACTTACTACTCTGGTGTCGCGTATTTGTGGCTTAGCCGTGTCGTATTTCTAGTCACAA
TGTCCCAAGGAATGTCTCAGGATTAAATTAAGTCCGTTCGGAATG
Found at i:68480 original size:11 final size:11
Alignment explanation
Indices: 68464--68500 Score: 65
Period size: 11 Copynumber: 3.4 Consensus size: 11
68454 AGGGAGGTAA
68464 GGGATGAGTAG
1 GGGATGAGTAG
68475 GGGATGAGTAG
1 GGGATGAGTAG
*
68486 GGGATGAGCAG
1 GGGATGAGTAG
68497 GGGA
1 GGGA
68501 AGAAAAGTCA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
11 25 1.00
ACGTcount: A:0.27, C:0.03, G:0.57, T:0.14
Consensus pattern (11 bp):
GGGATGAGTAG
Left flanking sequence: Indices 67964 -- 68463
ACACCGCACGGGCCTCGGTGCGCGAGCACACCACCTCGGAGGGAGGCACCTCTGCACTGGAAGCA
ACGGTGCCATAGCCGCCCACCGCAGATCCGCGAAGCGCCTCCTCGTCGATGGCCAGCATGGCGGG
GGGAAACAGGTGGCGTCGCGGGTCGGTCATACCGAACAGTACCCGCCGCTGCTGTAGGCCCAGGA
GAAGGGGCTTGGTCTCGTCGTACAGAGCCATGATGAGTTCTGGCAACCGGATGCGTCTTCGCTGC
AGAAAATTGTGCACACGAACAAATTAGCAGCCACAGTGCACATGGGACACCTCATCGCACTGGTG
CGGAGGAGGCGGGAGTAGGAGGCTACGGAGAGACGACTGGGTTCGTAGGGTGGACTGAAGGTGTT
TGCCTCGGTAGAGTGGTGAGGGAATCACTCTATGGTGGTGTAGACGGTCTTTTCACCTGGTCATG
GGGGTTTCAGGGGCTAAACGACTAGGGGGCTGATTAGGGAGGTAA
Right flanking sequence: Indices 68501 -- 69000
AGAAAAGTCAAACCCTGAGCGCAGTCGCGTCGCCCCTTGTAGCCTATTCGCTTGGGCCACGGAGT
TGCGTGGTACCTTATTTCGAGATAATAATAGAATCCGCTTACTGGAGTTCCGAATTTTCCAAGGG
GCTTGGCCGGAGTAATTAAGGTTCGTCAAGAGGCGTTGTTTTCTTTTTGCTTACATCGGGAGCGT
GTCTGATTATTAGTGTCAGAATAGAGGGGTTTTCTATTATCATAGTGCTAGTCCCCGTGGTAGTA
GCCTCGGTTAGCTGCCAGTTGCGTAACAAACACGCTCACAAGATATTTTAAGCTTTGGTCACAAG
CTCCTTATCCGATTGTCGACTGGATCGTCGCCCACGAAACAATACTTGCAATCAGAGATACACAT
GGGGTAACCGTTTTTCTGTCAGTGTTTATGTTTTGGCAGCCATGTGATACCGCGAACAAGGCGAT
TTTAACCGAGACCCAACGGTTGCGGGCGAAAAATAGCCTGTATGT
Found at i:88134 original size:12 final size:12
Alignment explanation
Indices: 88061--88128 Score: 64
Period size: 12 Copynumber: 5.2 Consensus size: 12
88051 TGGGCACCAA
88061 CACCGGCATTTG
1 CACCGGCATTTG
88073 CACCGGCATTTG
1 CACCGGCATTTG
**
88085 CAGTGGCACCAGTACTTG
1 CACCGG---CA-T--TTG
88103 CACCGGCATTTG
1 CACCGGCATTTG
88115 CACCGGCATTTG
1 CACCGGCATTTG
88127 CA
1 CA
88129 GTGGCACTGG
Statistics
Matches: 46, Mismatches: 4, Indels: 12
0.74 0.06 0.19
Matches are distributed among these distances:
12 33 0.72
14 1 0.02
15 4 0.09
16 1 0.02
18 7 0.15
ACGTcount: A:0.19, C:0.32, G:0.25, T:0.24
Consensus pattern (12 bp):
CACCGGCATTTG
Left flanking sequence: Indices 87561 -- 88060
GAACGGGTACGTGTGCCCGAAGTTCTCGCTGTAGTTCATGAACCACACCATCGGCAAGTTGGCGT
CGGCCACGGGGCCCAACGAAGTGAACTCCTCGCGCACCTGGGTGGCGGCCAGCACCGGCAGCACC
GTCTGCTGCTTGACCTGCTTGCACACGTGGCGGTGCGGGGCCCGGCGCGGCTCGTCCAGGAGCAA
CAGCAGCACCAGGAGCTTCAGCGGTGCTGGGTCGGGCACCTGCACCGGTGCTGGGTGCGGCTCGA
CGAACTCGAACTCGGCGGTGCGGTCGGTGTGGTCGAGCGGGTCGGCACGGGCCAGCGCGGGCCGT
GGGGGTATTGCCTCGAGCGAGGTCTGTCGCAGCGACCCTTCTGGAGGGGTGGTGGAATGGGCCCG
AGGAACGGACGGGGTTTGAGCGGTGGGGCGATTTGTGGGCCCATGTGGGCGGCGGTCGGGAGCGG
GATTGGTGGTGGCAAGGCCAGCAGAGACGGGAGACTGGGCACCAA
Right flanking sequence: Indices 88129 -- 88628
GTGGCACTGGCACTAGCCGCACCGGTTTCACCACCATTAGGAGCTGTAGAGCTTCGGGGGGCGCC
CGGAGCGTCCGTCCGGACACCCGCCCCGGTACTCTGGCCAGCAGCAGCACCGGGCACGCCCGCCA
AACCCTCCAGGAGTGGCGGCAGCATCGGTTCTTCGCGTCGTCGACGCTTGTTGGGCCGGTTGGTG
TAGACACACGGCACCCCGTGGCGTTTGCACGCGACACACCCCTGCCGCTCGCGCGAGCACTTCTT
TTTGAGCCGGTAGCACCGGTTGCAGTTGCTTGGGTGGTGGGTCAGCGCGTCCTCCAACTGGGTCT
CGTCGTGGACGTCCATCGGCTGGCGGAGCGAGGTGACACGGAACTTCAGGGTCACGGCGCCGTGG
CCCAACGACTTGCGCCAGTAGTAGTCCATCAGCGGTAGGCGTAGTGGTGGGCTCTGGGGGTTACT
GGGAGGGGACCTCGACGGTAGCGGCAGTTACTAATCGCAGCAAAA
Found at i:88938 original size:9 final size:9
Alignment explanation
Indices: 88924--88966 Score: 52
Period size: 9 Copynumber: 4.9 Consensus size: 9
88914 CAACGTGTTT
88924 GTGGCGTGG
1 GTGGCGTGG
88933 GTGGCGTGG
1 GTGGCGTGG
*
88942 GTAGCGT-G
1 GTGGCGTGG
*
88950 GTAGCGTGG
1 GTGGCGTGG
*
88959 GTGCCGTG
1 GTGGCGTG
88967 TTGGGTGCTC
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
8 8 0.27
9 22 0.73
ACGTcount: A:0.05, C:0.14, G:0.58, T:0.23
Consensus pattern (9 bp):
GTGGCGTGG
Left flanking sequence: Indices 88424 -- 88923
GGTGGGTCAGCGCGTCCTCCAACTGGGTCTCGTCGTGGACGTCCATCGGCTGGCGGAGCGAGGTG
ACACGGAACTTCAGGGTCACGGCGCCGTGGCCCAACGACTTGCGCCAGTAGTAGTCCATCAGCGG
TAGGCGTAGTGGTGGGCTCTGGGGGTTACTGGGAGGGGACCTCGACGGTAGCGGCAGTTACTAAT
CGCAGCAAAAAAAGCCATTTAAAAATTCGGGGTCTGGTGCGGAAGTTGCCTAATTCGGGGAGCAA
CACGACGTTAGCGGGTAGCTTTCGGAGCGGGGGAAACGGGACGGGGGAGAGAACGGGGGGTGCTA
CTGGGTGGCGGGGACTACACTGGCAAAAACGGCGGGCGTCCGAGGTGTGGATACGCCGGCCACCG
TCATGCTTCGCTCGCGGCATCTCTGGTTGCATAAAAAAACTGTGGCGTTGAGGTGGTACACACCT
CGCCATACACGCCCCAGTTGAGCTAACAAAGCGCCCAACGTGTTT
Right flanking sequence: Indices 88967 -- 89466
TTGGGTGCTCGTGGTTGGGCCACTTTTGCGGGCAAACCCCGCAAATTGCCAAGTAGGGGCGAAAG
ACGGCATCGGACTAGCAGCCACGACACGGTAGAGGAACAGCTCCAGGGCACCTGCGAGGGGTTGC
AAACGCTTCCGGAACTACGCGCATTGTGTAGTTATAATTGATAACAATGTGGTACGTGACCTGGG
AGTGGTTTTGCCTACACGCCACCCCAGGGGGAAAACGCTCGTGCGCCGGTACCGTTGGATCTACT
GATAACGCCGCACTAACCCACCGACGTGTCTCAGAGGCTGACGAGGCTTGGGACCTGCTACTCCG
TCACTCGGTTTTGCAGCCACACCCGTCCTGCATTGAGACCCCCCATGCAGCCACGATGTGCGACA
AGACGCCATCTATCTAATCGAGGAAGAGTACCATGCTGTCGACGCCACTGAAAGTGCGCCCGGCC
AAGCGGTTGATGGAGGCCAGTGGCAAGTGTGCCAAGGAAGGTGCT
Found at i:93107 original size:22 final size:24
Alignment explanation
Indices: 93081--93142 Score: 65
Period size: 27 Copynumber: 2.5 Consensus size: 24
93071 GTCGTACATT
*
93081 CATTTCCACTACAT-C-TCCACTA
1 CATTTCCACTACATACATACACTA
*
93103 CATTTTCACTACAATACCAGTACACTA
1 CATTTCCACTAC-ATA-CA-TACACTA
93130 CATTTCCACTACA
1 CATTTCCACTACA
93143 ATGCCAGTAC
Statistics
Matches: 32, Mismatches: 3, Indels: 6
0.78 0.07 0.15
Matches are distributed among these distances:
22 11 0.34
23 2 0.06
25 1 0.03
26 1 0.03
27 17 0.53
ACGTcount: A:0.32, C:0.35, G:0.02, T:0.31
Consensus pattern (24 bp):
CATTTCCACTACATACATACACTA
Left flanking sequence: Indices 92581 -- 93080
CGCGTTCATCACGCTCTCGCACCGCCCGTCGCTCATGAAGTACCACGACTTGGTGCTTGAGCTCA
AGGACCTGTCGCACTGGGTGTTGCACGACTTGCTGCTGGAGGAGAACTTGAAGACGATTGACGAC
GAGATTGCCGACTTGAAGCACAAGTTGGCGCAGGTGGAGCAGTGGGAGAAGCGCAAGACCGACAT
CGAGCTCTATTTGGACGGCAAGTACGAGGACTTGCAGGAGCCCGACCCGCAGGTGATTGCCCAGT
CGGAGAGCAAGGAGGGTCCTCAGGTGGGGGCCACCTCGAACACCGCCGAGGACGCGAAGAAGGCC
GCGAGGGAGTCGGTGAAGGCGGCGAAGTAGTTATTGTATTAAGATAGAGAATGGACGAGATTTTG
AATAGGATGAAACTGTGTACGGGGGGTTTTATGTTGGACAGATAGCTTCATGGAGGGTACGGGAC
AAGACAGAGAATAAACTATTCAGTTCTCCAGGGTTGTCGTACATT
Right flanking sequence: Indices 93143 -- 93642
ATGCCAGTACACTGCTAAATTTTGGTCTGCACGAACCCTGTCCAAACTTTTTTCTATTAATCTAT
ACCAGGGACCAGCCCCTCTAAATAGGCTCCGATTTCTGCCCAGTGCGCTCCACGTTGTAGTTGGC
TGCCCGCATGTAGTTCTGCCACATCTGGCTCACCACCTCGTTGTCACGGTTGGCAGCGTTGACAT
CCAGAAGACTCTGGTTCACCTCCGTCACCGCGCCGTTGAGCCGCTCCATGTTGGCATTGATCCGC
GACAACAACTCGTTGTGGATCTTGTCGTTTGGGTTCTCCATGGTGGTAGACGCGCACTCGCGTCT
GTTGTATCACACCACACGTGACAGGCATCACGCGCACCAACACACGTGACCGGATTACTGGGCGA
CGCATCCACTGTCCGTTTTAGGTTGCGCAATTTCGGGTGTCTGAAATTTGCCTAGACTGTAGCAG
AGACGACCCAGCGAGGGGACCGCGACGCGTAAACTAGACGAAAAA
Found at i:93130 original size:27 final size:27
Alignment explanation
Indices: 93098--93155 Score: 98
Period size: 27 Copynumber: 2.1 Consensus size: 27
93088 ACTACATCTC
*
93098 CACTACATTTTCACTACAATACCAGTA
1 CACTACATTTCCACTACAATACCAGTA
*
93125 CACTACATTTCCACTACAATGCCAGTA
1 CACTACATTTCCACTACAATACCAGTA
93152 CACT
1 CACT
93156 GCTAAATTTT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.34, C:0.33, G:0.05, T:0.28
Consensus pattern (27 bp):
CACTACATTTCCACTACAATACCAGTA
Left flanking sequence: Indices 92598 -- 93097
CGCACCGCCCGTCGCTCATGAAGTACCACGACTTGGTGCTTGAGCTCAAGGACCTGTCGCACTGG
GTGTTGCACGACTTGCTGCTGGAGGAGAACTTGAAGACGATTGACGACGAGATTGCCGACTTGAA
GCACAAGTTGGCGCAGGTGGAGCAGTGGGAGAAGCGCAAGACCGACATCGAGCTCTATTTGGACG
GCAAGTACGAGGACTTGCAGGAGCCCGACCCGCAGGTGATTGCCCAGTCGGAGAGCAAGGAGGGT
CCTCAGGTGGGGGCCACCTCGAACACCGCCGAGGACGCGAAGAAGGCCGCGAGGGAGTCGGTGAA
GGCGGCGAAGTAGTTATTGTATTAAGATAGAGAATGGACGAGATTTTGAATAGGATGAAACTGTG
TACGGGGGGTTTTATGTTGGACAGATAGCTTCATGGAGGGTACGGGACAAGACAGAGAATAAACT
ATTCAGTTCTCCAGGGTTGTCGTACATTCATTTCCACTACATCTC
Right flanking sequence: Indices 93156 -- 93655
GCTAAATTTTGGTCTGCACGAACCCTGTCCAAACTTTTTTCTATTAATCTATACCAGGGACCAGC
CCCTCTAAATAGGCTCCGATTTCTGCCCAGTGCGCTCCACGTTGTAGTTGGCTGCCCGCATGTAG
TTCTGCCACATCTGGCTCACCACCTCGTTGTCACGGTTGGCAGCGTTGACATCCAGAAGACTCTG
GTTCACCTCCGTCACCGCGCCGTTGAGCCGCTCCATGTTGGCATTGATCCGCGACAACAACTCGT
TGTGGATCTTGTCGTTTGGGTTCTCCATGGTGGTAGACGCGCACTCGCGTCTGTTGTATCACACC
ACACGTGACAGGCATCACGCGCACCAACACACGTGACCGGATTACTGGGCGACGCATCCACTGTC
CGTTTTAGGTTGCGCAATTTCGGGTGTCTGAAATTTGCCTAGACTGTAGCAGAGACGACCCAGCG
AGGGGACCGCGACGCGTAAACTAGACGAAAAAAGACAAAAGCAAC
Found at i:118942 original size:3 final size:3
Alignment explanation
Indices: 118934--118968 Score: 52
Period size: 3 Copynumber: 11.7 Consensus size: 3
118924 GCAAATGCCC
**
118934 CAG CAG CAG CAG CAG CAG CCC CAG CAG CAG CAG CA
1 CAG CAG CAG CAG CAG CAG CAG CAG CAG CAG CAG CA
118969 AATGTACAAT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.31, C:0.40, G:0.29, T:0.00
Consensus pattern (3 bp):
CAG
Left flanking sequence: Indices 118434 -- 118933
GCACCAGCGCCGAGGCAACTCGACGAGCCCGCCCGGGGGAAATCCCCTGGCATTGCCTGTTTCAT
AAAAGCTTATCTCGTGGTCGCTGGGCTCGCACTTTTCTGCACCACCTCAAACGGTTTAGTGCGAA
AAAAAACCTAACATTTTGACTTTTTAACCTACAACAACCCCCCTCCCTCGCCCACCCGTTGGTCC
CACTAGCAGTCCGACACCACCCCAGGCACCCCACACCCCATTGATCCCACCCCCGTGCTGCGCGT
GCCATGAACTCGTTTGTCCCCGAGAACGACCGCGAGCGGATCGTGGCGATCATTTCCCAGGCGAT
CAGACAGTTGCAGGGCCCCAACCACGACCCCCAGCGGGTGCAGATGATGGCCCGCGAGTTTGAAA
AGGTTACCTTTGACCGGCTGTCGCTGAAGGAGGAGTACTACCGCGTGATCAAGCAGAAAATGGAG
CAGCTCAAGGCCCAGATGTACCGCCGCAACCCGCAGCAAATGCCC
Right flanking sequence: Indices 118969 -- 119468
AATGTACAATCTGGGGTCGCTGGCGTCTCAGCCCACCTTCAACCAAATGGGGCAATCGCAGCAGT
TTGGCCAGTTCAACCAGCCCCAGCAACAACAACAACCGCAACAACCGATGATGAACAACCTGAAC
CTGATGATGGGCGGGTACAACCAGCTGTTTGGCTCGCAGAACCAGCCGATGCGCTCGCAGCAACC
CGCGTCCCAGCAGCCCCAGCAACCACAGCCGCAACAGCCGCAGGCGGCCAACCCGAACTCGCAGG
CAGTGGCCCGCCAGCTCTACTCGCTGCCCATCCCGCCCCAGTTGCTCGCGAAGATCCCCAACTTG
CCCCCGAACACCACCACCTGGCGCCAGATCCAGCACGGGTTGTCGACGGGCGTGATTCCGAAAAC
GCTGATTCCGTTGATCCGCGAGCTCCAGAACGCCCACTTGAAGGTGTTGCGCCAGCAGCAGTCGC
GCCAGCAGCAGCAGCAGCAACAGCAGCAGCAACAACAACAGCAAC
Found at i:118947 original size:21 final size:21
Alignment explanation
Indices: 118921--118972 Score: 79
Period size: 21 Copynumber: 2.5 Consensus size: 21
118911 GCCGCAACCC
118921 GCAGCAAATGCCCCAGCAGCA
1 GCAGCAAATGCCCCAGCAGCA
*
118942 GCAGCAGCA-GCCCCAGCAGCA
1 GCAGCA-AATGCCCCAGCAGCA
118963 GCAGCAAATG
1 GCAGCAAATG
118973 TACAATCTGG
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
20 1 0.04
21 25 0.93
22 1 0.04
ACGTcount: A:0.33, C:0.37, G:0.27, T:0.04
Consensus pattern (21 bp):
GCAGCAAATGCCCCAGCAGCA
Left flanking sequence: Indices 118421 -- 118920
GTTTGCACACCCCGCACCAGCGCCGAGGCAACTCGACGAGCCCGCCCGGGGGAAATCCCCTGGCA
TTGCCTGTTTCATAAAAGCTTATCTCGTGGTCGCTGGGCTCGCACTTTTCTGCACCACCTCAAAC
GGTTTAGTGCGAAAAAAAACCTAACATTTTGACTTTTTAACCTACAACAACCCCCCTCCCTCGCC
CACCCGTTGGTCCCACTAGCAGTCCGACACCACCCCAGGCACCCCACACCCCATTGATCCCACCC
CCGTGCTGCGCGTGCCATGAACTCGTTTGTCCCCGAGAACGACCGCGAGCGGATCGTGGCGATCA
TTTCCCAGGCGATCAGACAGTTGCAGGGCCCCAACCACGACCCCCAGCGGGTGCAGATGATGGCC
CGCGAGTTTGAAAAGGTTACCTTTGACCGGCTGTCGCTGAAGGAGGAGTACTACCGCGTGATCAA
GCAGAAAATGGAGCAGCTCAAGGCCCAGATGTACCGCCGCAACCC
Right flanking sequence: Indices 118973 -- 119472
TACAATCTGGGGTCGCTGGCGTCTCAGCCCACCTTCAACCAAATGGGGCAATCGCAGCAGTTTGG
CCAGTTCAACCAGCCCCAGCAACAACAACAACCGCAACAACCGATGATGAACAACCTGAACCTGA
TGATGGGCGGGTACAACCAGCTGTTTGGCTCGCAGAACCAGCCGATGCGCTCGCAGCAACCCGCG
TCCCAGCAGCCCCAGCAACCACAGCCGCAACAGCCGCAGGCGGCCAACCCGAACTCGCAGGCAGT
GGCCCGCCAGCTCTACTCGCTGCCCATCCCGCCCCAGTTGCTCGCGAAGATCCCCAACTTGCCCC
CGAACACCACCACCTGGCGCCAGATCCAGCACGGGTTGTCGACGGGCGTGATTCCGAAAACGCTG
ATTCCGTTGATCCGCGAGCTCCAGAACGCCCACTTGAAGGTGTTGCGCCAGCAGCAGTCGCGCCA
GCAGCAGCAGCAGCAACAGCAGCAGCAACAACAACAGCAACCTCA
Found at i:119455 original size:12 final size:12
Alignment explanation
Indices: 119426--119468 Score: 59
Period size: 12 Copynumber: 3.6 Consensus size: 12
119416 GCAGTCGCGC
*
119426 CAGCAGCAGCAG
1 CAGCAACAGCAG
119438 CAGCAACAGCAG
1 CAGCAACAGCAG
* *
119450 CAGCAACAACAA
1 CAGCAACAGCAG
119462 CAGCAAC
1 CAGCAAC
119469 CTCAACCTCA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
12 28 1.00
ACGTcount: A:0.44, C:0.35, G:0.21, T:0.00
Consensus pattern (12 bp):
CAGCAACAGCAG
Left flanking sequence: Indices 118926 -- 119425
AAATGCCCCAGCAGCAGCAGCAGCAGCCCCAGCAGCAGCAGCAAATGTACAATCTGGGGTCGCTG
GCGTCTCAGCCCACCTTCAACCAAATGGGGCAATCGCAGCAGTTTGGCCAGTTCAACCAGCCCCA
GCAACAACAACAACCGCAACAACCGATGATGAACAACCTGAACCTGATGATGGGCGGGTACAACC
AGCTGTTTGGCTCGCAGAACCAGCCGATGCGCTCGCAGCAACCCGCGTCCCAGCAGCCCCAGCAA
CCACAGCCGCAACAGCCGCAGGCGGCCAACCCGAACTCGCAGGCAGTGGCCCGCCAGCTCTACTC
GCTGCCCATCCCGCCCCAGTTGCTCGCGAAGATCCCCAACTTGCCCCCGAACACCACCACCTGGC
GCCAGATCCAGCACGGGTTGTCGACGGGCGTGATTCCGAAAACGCTGATTCCGTTGATCCGCGAG
CTCCAGAACGCCCACTTGAAGGTGTTGCGCCAGCAGCAGTCGCGC
Right flanking sequence: Indices 119469 -- 119968
CTCAACCTCAACAACCTCAACCGGTTCCCCAACAACAACAGCAGAATCCCCAGGCGCTGTACTCG
CTGGCGATGAACCTGCAGCAGCGGCAGCAGTACGTGCAACGGCAGATGCAGCAGCAGCGGATGAA
GCAGTTCCAGGGCCAGCAACCGGCACAGCCCACGCAGCCCACACCGCAGCAGCCACCGCAGCCCA
CGCCCCGCCAGCAGCCGCAGCAAATGGGCCACCAGATGCCCCAGCAGCAGATGGGCATGCGGCCG
CAGGGCCAGCCCGCGCAGGGCCAGCACCCGCAAATGACGGTGACCCAGCAGGACTACACCAAGTA
CTCGCCGGACGCGTTGTTGGTGCTCCAGCAGTTGCGCCAGCAGGGCAAGATTCCCCAGCAGTTGA
GCAACCAGGAGCGCGAGGCGTACATCCACAAGTACATCCTCATGCAGAAGAAGAAGGAGCTCAAC
GCGGCCCGCATGGCCCAGCCGCCGCAGCAGCCGCAACAGCAGCAG
Found at i:119675 original size:24 final size:24
Alignment explanation
Indices: 119631--119684 Score: 58
Period size: 24 Copynumber: 2.2 Consensus size: 24
119621 GCACAGCCCA
119631 CGCAGCCCACACCGCAGCAGCCA-C
1 CGCAGCCCACACCGCAGCAG-CAGC
* *
119655 CGCAGCCCACGCC-CCGCCAGCAGC
1 CGCAGCCCACACCGCAG-CAGCAGC
119679 CGCAGC
1 CGCAGC
119685 AAATGGGCCA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
23 4 0.15
24 22 0.85
ACGTcount: A:0.20, C:0.56, G:0.24, T:0.00
Consensus pattern (24 bp):
CGCAGCCCACACCGCAGCAGCAGC
Left flanking sequence: Indices 119131 -- 119630
CTCGCAGAACCAGCCGATGCGCTCGCAGCAACCCGCGTCCCAGCAGCCCCAGCAACCACAGCCGC
AACAGCCGCAGGCGGCCAACCCGAACTCGCAGGCAGTGGCCCGCCAGCTCTACTCGCTGCCCATC
CCGCCCCAGTTGCTCGCGAAGATCCCCAACTTGCCCCCGAACACCACCACCTGGCGCCAGATCCA
GCACGGGTTGTCGACGGGCGTGATTCCGAAAACGCTGATTCCGTTGATCCGCGAGCTCCAGAACG
CCCACTTGAAGGTGTTGCGCCAGCAGCAGTCGCGCCAGCAGCAGCAGCAGCAACAGCAGCAGCAA
CAACAACAGCAACCTCAACCTCAACAACCTCAACCGGTTCCCCAACAACAACAGCAGAATCCCCA
GGCGCTGTACTCGCTGGCGATGAACCTGCAGCAGCGGCAGCAGTACGTGCAACGGCAGATGCAGC
AGCAGCGGATGAAGCAGTTCCAGGGCCAGCAACCGGCACAGCCCA
Right flanking sequence: Indices 119685 -- 120184
AAATGGGCCACCAGATGCCCCAGCAGCAGATGGGCATGCGGCCGCAGGGCCAGCCCGCGCAGGGC
CAGCACCCGCAAATGACGGTGACCCAGCAGGACTACACCAAGTACTCGCCGGACGCGTTGTTGGT
GCTCCAGCAGTTGCGCCAGCAGGGCAAGATTCCCCAGCAGTTGAGCAACCAGGAGCGCGAGGCGT
ACATCCACAAGTACATCCTCATGCAGAAGAAGAAGGAGCTCAACGCGGCCCGCATGGCCCAGCCG
CCGCAGCAGCCGCAACAGCAGCAGCCACCGCAGGCACCCACCCAGTCGCAGGCCCCGATGCAGTT
GGGCATGGCCTCCAACGGGATGATGAACCGGCTGGCGCCCATGGCGACCCCCCAGCCGGCCCAGC
AGCCCGCCCAGCAGCCGCCCGCGGCCCAGCCCGCGCTGATGGGCGCCCGCATGCCCGCGTTCACC
GAGGAAATGAAGGTGCGGTTGCAGCAGTTGTTCCAGGAGGTGCAG
Found at i:119760 original size:15 final size:14
Alignment explanation
Indices: 119726--119760 Score: 52
Period size: 15 Copynumber: 2.4 Consensus size: 14
119716 GGGCATGCGG
119726 CCGCAGGGCCAGCC
1 CCGCAGGGCCAGCC
119740 CGCGCAGGGCCAGCAC
1 C-CGCAGGGCCAGC-C
119756 CCGCA
1 CCGCA
119761 AATGACGGTG
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
14 1 0.05
15 16 0.84
16 2 0.11
ACGTcount: A:0.17, C:0.49, G:0.34, T:0.00
Consensus pattern (14 bp):
CCGCAGGGCCAGCC
Left flanking sequence: Indices 119226 -- 119725
AGGCAGTGGCCCGCCAGCTCTACTCGCTGCCCATCCCGCCCCAGTTGCTCGCGAAGATCCCCAAC
TTGCCCCCGAACACCACCACCTGGCGCCAGATCCAGCACGGGTTGTCGACGGGCGTGATTCCGAA
AACGCTGATTCCGTTGATCCGCGAGCTCCAGAACGCCCACTTGAAGGTGTTGCGCCAGCAGCAGT
CGCGCCAGCAGCAGCAGCAGCAACAGCAGCAGCAACAACAACAGCAACCTCAACCTCAACAACCT
CAACCGGTTCCCCAACAACAACAGCAGAATCCCCAGGCGCTGTACTCGCTGGCGATGAACCTGCA
GCAGCGGCAGCAGTACGTGCAACGGCAGATGCAGCAGCAGCGGATGAAGCAGTTCCAGGGCCAGC
AACCGGCACAGCCCACGCAGCCCACACCGCAGCAGCCACCGCAGCCCACGCCCCGCCAGCAGCCG
CAGCAAATGGGCCACCAGATGCCCCAGCAGCAGATGGGCATGCGG
Right flanking sequence: Indices 119761 -- 120260
AATGACGGTGACCCAGCAGGACTACACCAAGTACTCGCCGGACGCGTTGTTGGTGCTCCAGCAGT
TGCGCCAGCAGGGCAAGATTCCCCAGCAGTTGAGCAACCAGGAGCGCGAGGCGTACATCCACAAG
TACATCCTCATGCAGAAGAAGAAGGAGCTCAACGCGGCCCGCATGGCCCAGCCGCCGCAGCAGCC
GCAACAGCAGCAGCCACCGCAGGCACCCACCCAGTCGCAGGCCCCGATGCAGTTGGGCATGGCCT
CCAACGGGATGATGAACCGGCTGGCGCCCATGGCGACCCCCCAGCCGGCCCAGCAGCCCGCCCAG
CAGCCGCCCGCGGCCCAGCCCGCGCTGATGGGCGCCCGCATGCCCGCGTTCACCGAGGAAATGAA
GGTGCGGTTGCAGCAGTTGTTCCAGGAGGTGCAGCGCAACAACGTGGTGTTGCCCGACGTGACCA
ACGAGTTGCTGTACCAGGACCGCCAGACGGTGCTGGAGCAGATTG
Found at i:120083 original size:12 final size:12
Alignment explanation
Indices: 120062--120094 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
120052 GGCGACCCCC
*
120062 CAGCCGGCCCAG
1 CAGCCCGCCCAG
120074 CAGCCCGCCCAG
1 CAGCCCGCCCAG
120086 CAG-CCGCCC
1 CAGCCCGCCC
120095 GCGGCCCAGC
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
11 6 0.30
12 14 0.70
ACGTcount: A:0.15, C:0.58, G:0.27, T:0.00
Consensus pattern (12 bp):
CAGCCCGCCCAG
Left flanking sequence: Indices 119562 -- 120061
AGTACGTGCAACGGCAGATGCAGCAGCAGCGGATGAAGCAGTTCCAGGGCCAGCAACCGGCACAG
CCCACGCAGCCCACACCGCAGCAGCCACCGCAGCCCACGCCCCGCCAGCAGCCGCAGCAAATGGG
CCACCAGATGCCCCAGCAGCAGATGGGCATGCGGCCGCAGGGCCAGCCCGCGCAGGGCCAGCACC
CGCAAATGACGGTGACCCAGCAGGACTACACCAAGTACTCGCCGGACGCGTTGTTGGTGCTCCAG
CAGTTGCGCCAGCAGGGCAAGATTCCCCAGCAGTTGAGCAACCAGGAGCGCGAGGCGTACATCCA
CAAGTACATCCTCATGCAGAAGAAGAAGGAGCTCAACGCGGCCCGCATGGCCCAGCCGCCGCAGC
AGCCGCAACAGCAGCAGCCACCGCAGGCACCCACCCAGTCGCAGGCCCCGATGCAGTTGGGCATG
GCCTCCAACGGGATGATGAACCGGCTGGCGCCCATGGCGACCCCC
Right flanking sequence: Indices 120095 -- 120594
GCGGCCCAGCCCGCGCTGATGGGCGCCCGCATGCCCGCGTTCACCGAGGAAATGAAGGTGCGGTT
GCAGCAGTTGTTCCAGGAGGTGCAGCGCAACAACGTGGTGTTGCCCGACGTGACCAACGAGTTGC
TGTACCAGGACCGCCAGACGGTGCTGGAGCAGATTGTGCGGATCTCGCAGCAGTACGCCACCATC
GACCGGTACATCACCTACTTCTACATGATCTCCAACGACGAGGAGATCACGAAAAAGTTGATCCG
GATGAAGGTGATGACGGGCCAGATCTTGGAGCACCTGCGCCGCGACCGCTACTTGGCGCGGCCCG
AGTTGTTGAACCGCCTCAAGGCCCAGTTCCAAAAGTGCTACGACTACGTCAAGGAGTTTGTGCTG
AAGCGCCAGGGCCAGGCGCCCGCGGGCCAGGCACTGCCTCCACCGCCGCAGTTCACGCCGATGAT
GTCGCAGGCCCAGCCCATGTTCCAGCAGCCGGCCCAGCAGCCTCA
Found at i:120596 original size:9 final size:9
Alignment explanation
Indices: 120582--120657 Score: 64
Period size: 9 Copynumber: 8.1 Consensus size: 9
120572 CAGCAGCCGG
120582 CCCAGCAGC
1 CCCAGCAGC
*
120591 CTCAGCAGC
1 CCCAGCAGC
120600 CCCAGCAGC
1 CCCAGCAGC
*
120609 CGCAGCAGC
1 CCCAGCAGC
120618 CACC-GCAACCGC
1 C-CCAGC-A--GC
*
120630 CGCAGCAGC
1 CCCAGCAGC
*
120639 CCCAGCAGT
1 CCCAGCAGC
*
120648 TCCAGCAGC
1 CCCAGCAGC
120657 C
1 C
120658 GCCCATGCAG
Statistics
Matches: 52, Mismatches: 10, Indels: 10
0.72 0.14 0.14
Matches are distributed among these distances:
9 43 0.83
10 2 0.04
11 2 0.04
12 5 0.10
ACGTcount: A:0.22, C:0.50, G:0.24, T:0.04
Consensus pattern (9 bp):
CCCAGCAGC
Left flanking sequence: Indices 120082 -- 120581
CCAGCAGCCGCCCGCGGCCCAGCCCGCGCTGATGGGCGCCCGCATGCCCGCGTTCACCGAGGAAA
TGAAGGTGCGGTTGCAGCAGTTGTTCCAGGAGGTGCAGCGCAACAACGTGGTGTTGCCCGACGTG
ACCAACGAGTTGCTGTACCAGGACCGCCAGACGGTGCTGGAGCAGATTGTGCGGATCTCGCAGCA
GTACGCCACCATCGACCGGTACATCACCTACTTCTACATGATCTCCAACGACGAGGAGATCACGA
AAAAGTTGATCCGGATGAAGGTGATGACGGGCCAGATCTTGGAGCACCTGCGCCGCGACCGCTAC
TTGGCGCGGCCCGAGTTGTTGAACCGCCTCAAGGCCCAGTTCCAAAAGTGCTACGACTACGTCAA
GGAGTTTGTGCTGAAGCGCCAGGGCCAGGCGCCCGCGGGCCAGGCACTGCCTCCACCGCCGCAGT
TCACGCCGATGATGTCGCAGGCCCAGCCCATGTTCCAGCAGCCGG
Right flanking sequence: Indices 120658 -- 121157
GCCCATGCAGCCGGTGCCCGCGCAGCTTCCCGACCAGTGGGGCCCGCGGTCGCTGCCGCTCATGA
CCACGCTGATGCTGCCGGCCATGGCGCCCACGCCCGCTCCCGCGGCCAAAAAGACCCCGGCCCAG
CAGCCCGCCGCCACCCGCCGCAAGCTCCTGAGCAACAAGGGCCCCATCAACGCCGCGCTGATCCC
GACACCGCCCAACGCCATGGCGCTGATGCGCACACCCAACCTGATCCCCACCCCGCACCCGCCCG
CGCTGCAGCTGAACAAGAACACGCCGCAGACCCAGCTGCCGCAGTTTGTCAAGAACACGCCGCTG
GCGCACTCGGACGACGTGTTTGCCCACCTGGCGGACGACGCCAAGCTTGCCAAGCGGCGCGAGAT
GCTGGCGACCCAGCCCGAGCACTTTTTCTACGCGCTGTTGGCGAACTTGCTTGAGCTCGACGAGC
CGCTGGCGCAGGGGGAGATCCCGGGCCCGGTGCCGGGCAAGCTGC
Found at i:120603 original size:18 final size:18
Alignment explanation
Indices: 120582--120646 Score: 78
Period size: 18 Copynumber: 3.4 Consensus size: 18
120572 CAGCAGCCGG
*
120582 CCCAGCAGCCTCAGCAGC
1 CCCAGCAGCCGCAGCAGC
120600 CCCAGCAGCCGCAGCAGC
1 CCCAGCAGCCGCAGCAGC
120618 CACC-GCAACCGCCGCAGCAGC
1 C-CCAGC-A--GCCGCAGCAGC
120639 CCCAGCAG
1 CCCAGCAG
120647 TTCCAGCAGC
Statistics
Matches: 41, Mismatches: 1, Indels: 10
0.79 0.02 0.19
Matches are distributed among these distances:
18 21 0.51
19 3 0.07
20 3 0.07
21 14 0.34
ACGTcount: A:0.23, C:0.51, G:0.25, T:0.02
Consensus pattern (18 bp):
CCCAGCAGCCGCAGCAGC
Left flanking sequence: Indices 120082 -- 120581
CCAGCAGCCGCCCGCGGCCCAGCCCGCGCTGATGGGCGCCCGCATGCCCGCGTTCACCGAGGAAA
TGAAGGTGCGGTTGCAGCAGTTGTTCCAGGAGGTGCAGCGCAACAACGTGGTGTTGCCCGACGTG
ACCAACGAGTTGCTGTACCAGGACCGCCAGACGGTGCTGGAGCAGATTGTGCGGATCTCGCAGCA
GTACGCCACCATCGACCGGTACATCACCTACTTCTACATGATCTCCAACGACGAGGAGATCACGA
AAAAGTTGATCCGGATGAAGGTGATGACGGGCCAGATCTTGGAGCACCTGCGCCGCGACCGCTAC
TTGGCGCGGCCCGAGTTGTTGAACCGCCTCAAGGCCCAGTTCCAAAAGTGCTACGACTACGTCAA
GGAGTTTGTGCTGAAGCGCCAGGGCCAGGCGCCCGCGGGCCAGGCACTGCCTCCACCGCCGCAGT
TCACGCCGATGATGTCGCAGGCCCAGCCCATGTTCCAGCAGCCGG
Right flanking sequence: Indices 120647 -- 121146
TTCCAGCAGCCGCCCATGCAGCCGGTGCCCGCGCAGCTTCCCGACCAGTGGGGCCCGCGGTCGCT
GCCGCTCATGACCACGCTGATGCTGCCGGCCATGGCGCCCACGCCCGCTCCCGCGGCCAAAAAGA
CCCCGGCCCAGCAGCCCGCCGCCACCCGCCGCAAGCTCCTGAGCAACAAGGGCCCCATCAACGCC
GCGCTGATCCCGACACCGCCCAACGCCATGGCGCTGATGCGCACACCCAACCTGATCCCCACCCC
GCACCCGCCCGCGCTGCAGCTGAACAAGAACACGCCGCAGACCCAGCTGCCGCAGTTTGTCAAGA
ACACGCCGCTGGCGCACTCGGACGACGTGTTTGCCCACCTGGCGGACGACGCCAAGCTTGCCAAG
CGGCGCGAGATGCTGGCGACCCAGCCCGAGCACTTTTTCTACGCGCTGTTGGCGAACTTGCTTGA
GCTCGACGAGCCGCTGGCGCAGGGGGAGATCCCGGGCCCGGTGCC
Found at i:121517 original size:7 final size:7
Alignment explanation
Indices: 121507--121572 Score: 64
Period size: 7 Copynumber: 9.3 Consensus size: 7
121497 AGAGGGGTGA
121507 GGTGAAG
1 GGTGAAG
*
121514 GGTGGAG
1 GGTGAAG
121521 GGTG-A-
1 GGTGAAG
121526 GGTGAAAG
1 GGTG-AAG
121534 GGTGAAG
1 GGTGAAG
*
121541 GGTAAAG
1 GGTGAAG
121548 AGGTGAAG
1 -GGTGAAG
*
121556 GGTAAATG
1 GGTGAA-G
121564 GGTGAAG
1 GGTGAAG
121571 GG
1 GG
121573 GTAGGGTATA
Statistics
Matches: 49, Mismatches: 5, Indels: 10
0.77 0.08 0.16
Matches are distributed among these distances:
5 4 0.08
6 1 0.02
7 28 0.57
8 16 0.33
ACGTcount: A:0.30, C:0.00, G:0.55, T:0.15
Consensus pattern (7 bp):
GGTGAAG
Left flanking sequence: Indices 121007 -- 121506
CACCTGGCGGACGACGCCAAGCTTGCCAAGCGGCGCGAGATGCTGGCGACCCAGCCCGAGCACTT
TTTCTACGCGCTGTTGGCGAACTTGCTTGAGCTCGACGAGCCGCTGGCGCAGGGGGAGATCCCGG
GCCCGGTGCCGGGCAAGCTGCTGCCGTTGTCGCCGGCGATGACCGAGTGGACGTGCGAGATCAAG
CTGGAGGCGCTCACGCTGGCGTTCCGCCAGGTGGGGGCGATCCGCGAGTTGGTGCTGACGGACAT
TATTGACACCTGCAACCAGTTGGCGACCGAGGAGCGCACCAAGCGGCCGGCGCTGTTTGATGACG
ACATAGACCAGTTGTTTGGTGAAAAGAAGCCCAAGTTGGAGGACTTTGACAAGTTGATCCACGAG
CCGGTTTCATTTGACGACTGGAAGCTGTTTGTGGTGCCGAGCATCCAGTAGCTTTCGGTTATTTA
GTTGTACCAGTAATAAAAGAGTAATGGAGGAGTGTAGAGGGGTGA
Right flanking sequence: Indices 121573 -- 122072
GTAGGGTATATGAGGCTGGGCTACGGGTGGAGGTGTTTATAAGGCTTTGTTGCGGGTGTAATGTG
TTTATGAGGCGTTGTGGTTGAACATGTTCTGGCTGTTTTGATACTGGTGTATTTTTGATGGTGGG
GTTGTTCGTAGGTTTGGTGAAATTTCTGAAAATTGTGTCAACGGATTAGGGTTGAAAGGAATGTG
ATTTATATTACCGTTCAGAGCCAAAAGGTGGTTGATTACCCTGTTTTGACCTTTATGAGTTCCAT
ACAACGGGTCTTTCTCCACTATCTCAACCATCGCATCAATATTCCCATTCCATCTCTACTTCTAT
GCCGCTTCACCCGCCTCAACAACAGGCCTGGTTAGCTCAATCGGTAGAGCGTGAGACTCTTAATC
TCAAGGCTGCGGGTTCGAGCCCCGCATCGGGCTGTTCTTTTTGCTGTCTGGCGGTACCCTCTTTT
TGCAGCCGGTCTGCCCGTATGGTCGCGTGATGGCGATGGCCACCT
Found at i:121525 original size:19 final size:19
Alignment explanation
Indices: 121501--121568 Score: 73
Period size: 20 Copynumber: 3.3 Consensus size: 19
121491 GAGTGTAGAG
*
121501 GGGTGAGGTGAAGGGTGGA
1 GGGTGAGGTGAAGGGTGAA
121520 GGGTGAGGTGAAAGGGTGAA
1 GGGTGAGGTG-AAGGGTGAA
*
121540 GGGTAAAGAGGTGAAGGGTAAA
1 GGGT---GAGGTGAAGGGTGAA
121562 TGGGTGA
1 -GGGTGA
121569 AGGGGTAGGG
Statistics
Matches: 42, Mismatches: 2, Indels: 9
0.79 0.04 0.17
Matches are distributed among these distances:
19 10 0.24
20 14 0.33
22 8 0.19
23 10 0.24
ACGTcount: A:0.29, C:0.00, G:0.54, T:0.16
Consensus pattern (19 bp):
GGGTGAGGTGAAGGGTGAA
Left flanking sequence: Indices 121001 -- 121500
TTTGCCCACCTGGCGGACGACGCCAAGCTTGCCAAGCGGCGCGAGATGCTGGCGACCCAGCCCGA
GCACTTTTTCTACGCGCTGTTGGCGAACTTGCTTGAGCTCGACGAGCCGCTGGCGCAGGGGGAGA
TCCCGGGCCCGGTGCCGGGCAAGCTGCTGCCGTTGTCGCCGGCGATGACCGAGTGGACGTGCGAG
ATCAAGCTGGAGGCGCTCACGCTGGCGTTCCGCCAGGTGGGGGCGATCCGCGAGTTGGTGCTGAC
GGACATTATTGACACCTGCAACCAGTTGGCGACCGAGGAGCGCACCAAGCGGCCGGCGCTGTTTG
ATGACGACATAGACCAGTTGTTTGGTGAAAAGAAGCCCAAGTTGGAGGACTTTGACAAGTTGATC
CACGAGCCGGTTTCATTTGACGACTGGAAGCTGTTTGTGGTGCCGAGCATCCAGTAGCTTTCGGT
TATTTAGTTGTACCAGTAATAAAAGAGTAATGGAGGAGTGTAGAG
Right flanking sequence: Indices 121569 -- 122068
AGGGGTAGGGTATATGAGGCTGGGCTACGGGTGGAGGTGTTTATAAGGCTTTGTTGCGGGTGTAA
TGTGTTTATGAGGCGTTGTGGTTGAACATGTTCTGGCTGTTTTGATACTGGTGTATTTTTGATGG
TGGGGTTGTTCGTAGGTTTGGTGAAATTTCTGAAAATTGTGTCAACGGATTAGGGTTGAAAGGAA
TGTGATTTATATTACCGTTCAGAGCCAAAAGGTGGTTGATTACCCTGTTTTGACCTTTATGAGTT
CCATACAACGGGTCTTTCTCCACTATCTCAACCATCGCATCAATATTCCCATTCCATCTCTACTT
CTATGCCGCTTCACCCGCCTCAACAACAGGCCTGGTTAGCTCAATCGGTAGAGCGTGAGACTCTT
AATCTCAAGGCTGCGGGTTCGAGCCCCGCATCGGGCTGTTCTTTTTGCTGTCTGGCGGTACCCTC
TTTTTGCAGCCGGTCTGCCCGTATGGTCGCGTGATGGCGATGGCC
Found at i:121554 original size:15 final size:14
Alignment explanation
Indices: 121507--121572 Score: 73
Period size: 15 Copynumber: 4.6 Consensus size: 14
121497 AGAGGGGTGA
**
121507 GGTGAAGGGTGGAG
1 GGTGAAGGGTAAAG
121521 GGTG-A-GGTGAAAG
1 GGTGAAGGGT-AAAG
121534 GGTGAAGGGTAAAG
1 GGTGAAGGGTAAAG
121548 AGGTGAAGGGTAAATG
1 -GGTGAAGGGTAAA-G
121564 GGTGAAGGG
1 GGTGAAGGG
121573 GTAGGGTATA
Statistics
Matches: 45, Mismatches: 2, Indels: 9
0.80 0.04 0.16
Matches are distributed among these distances:
12 3 0.07
13 7 0.16
14 9 0.20
15 25 0.56
16 1 0.02
ACGTcount: A:0.30, C:0.00, G:0.55, T:0.15
Consensus pattern (14 bp):
GGTGAAGGGTAAAG
Left flanking sequence: Indices 121007 -- 121506
CACCTGGCGGACGACGCCAAGCTTGCCAAGCGGCGCGAGATGCTGGCGACCCAGCCCGAGCACTT
TTTCTACGCGCTGTTGGCGAACTTGCTTGAGCTCGACGAGCCGCTGGCGCAGGGGGAGATCCCGG
GCCCGGTGCCGGGCAAGCTGCTGCCGTTGTCGCCGGCGATGACCGAGTGGACGTGCGAGATCAAG
CTGGAGGCGCTCACGCTGGCGTTCCGCCAGGTGGGGGCGATCCGCGAGTTGGTGCTGACGGACAT
TATTGACACCTGCAACCAGTTGGCGACCGAGGAGCGCACCAAGCGGCCGGCGCTGTTTGATGACG
ACATAGACCAGTTGTTTGGTGAAAAGAAGCCCAAGTTGGAGGACTTTGACAAGTTGATCCACGAG
CCGGTTTCATTTGACGACTGGAAGCTGTTTGTGGTGCCGAGCATCCAGTAGCTTTCGGTTATTTA
GTTGTACCAGTAATAAAAGAGTAATGGAGGAGTGTAGAGGGGTGA
Right flanking sequence: Indices 121573 -- 122072
GTAGGGTATATGAGGCTGGGCTACGGGTGGAGGTGTTTATAAGGCTTTGTTGCGGGTGTAATGTG
TTTATGAGGCGTTGTGGTTGAACATGTTCTGGCTGTTTTGATACTGGTGTATTTTTGATGGTGGG
GTTGTTCGTAGGTTTGGTGAAATTTCTGAAAATTGTGTCAACGGATTAGGGTTGAAAGGAATGTG
ATTTATATTACCGTTCAGAGCCAAAAGGTGGTTGATTACCCTGTTTTGACCTTTATGAGTTCCAT
ACAACGGGTCTTTCTCCACTATCTCAACCATCGCATCAATATTCCCATTCCATCTCTACTTCTAT
GCCGCTTCACCCGCCTCAACAACAGGCCTGGTTAGCTCAATCGGTAGAGCGTGAGACTCTTAATC
TCAAGGCTGCGGGTTCGAGCCCCGCATCGGGCTGTTCTTTTTGCTGTCTGGCGGTACCCTCTTTT
TGCAGCCGGTCTGCCCGTATGGTCGCGTGATGGCGATGGCCACCT
Found at i:125511 original size:20 final size:20
Alignment explanation
Indices: 125475--125542 Score: 95
Period size: 22 Copynumber: 3.4 Consensus size: 20
125465 ATTGCATAGG
125475 TACTCACA-CAT-TATAGCT
1 TACTCACACCATATATAGCT
125493 TACTCACACCATATATAGCT
1 TACTCACACCATATATAGCT
*
125513 TACTCACAACTCATATTTAGCT
1 TACTCAC-AC-CATATATAGCT
125535 TACTCACA
1 TACTCACA
125543 ACTCATAAAT
Statistics
Matches: 45, Mismatches: 1, Indels: 5
0.88 0.02 0.10
Matches are distributed among these distances:
18 8 0.18
19 3 0.07
20 14 0.31
21 3 0.07
22 17 0.38
ACGTcount: A:0.34, C:0.29, G:0.04, T:0.32
Consensus pattern (20 bp):
TACTCACACCATATATAGCT
Left flanking sequence: Indices 124975 -- 125474
CTTGCGGTGCCCACCGTGGACACCCTGGGCTCGGCCACCCGGCGGGTGGTGTCGTGGCTGGGAGC
GTTGCTCCAGGCTCCGCACTACGGGGTGCGCGAGTTGATGGACCTGATCCCGTCGGAGGTGTACG
TGACCAAGATCGCCACAGCCTCGCCGTGCCACCAGTACGGGGTGGGGTCCAACTCGTTCATCACC
CACGTCAACGACGTGGCCACCCCGACGTTGAAGCAGTTCATCGCGGTGGTGACCCAGATCCCCGA
CAACACCTACGTCAAGGTGCGGGCGGTGACGTTTGACAACGTTCCCTACGCGCTTTCGATCAAGA
TCAACTACCACTACTTCCCCACGGGCGAGTTCAAGAAGGACGCCGCCGGCAAGTGGGTCGAGACC
GAGTTTTAGCATATGGGCAGGTAAATAATAGATATGAGATAAAGGTGAAGAGTGGGGTTGGTGAC
ACAACGCGTGGGTGGACGACGATGAAACGGTGTCAATTGCATAGG
Right flanking sequence: Indices 125543 -- 126042
ACTCATAAATCTAAATTTATACTCTTTCTTTAAATGGATTATACTTCATTTATCATTATATTTCT
AACAAATCCACGGGGATGACTTACCAGATCTTCAACTACAAGAACCTTCACTTTTTGACAGCAAT
TGGCATCACTTTTAAAATTTCACTCAAAAAACACCATACTCATCTTTTATTCTTCCTATTCGAAT
CGTTCCTCAAATGCACCCAGGCCTTCACTTCGCATATTTTACGCGCGTTGACAGCCTAAACAAAC
AAACGCGGTCTAGCCCATGTCGACCATTGCAGGCAGTGGTCACGGAACCGGCGATAAGGCAGCAT
CGCTACCGAAACAGAAACCCCGAGGGGGTCTTCTGATGTTCCGTCGCTACGTTGAACGCACGTTC
GGCCACAAAACGCAAGTGCCAGAGCCGAAGGTACAGGAAGAGGAGGAGGAAGAGGAAGAGGACGA
GGAGGATAGTGAAGACGAGGCATCACTGTCTACCCAAGAACCCAC
Found at i:125533 original size:22 final size:22
Alignment explanation
Indices: 125486--125549 Score: 105
Period size: 22 Copynumber: 3.0 Consensus size: 22
125476 ACTCACACAT
125486 TATAGCTTACTCAC-AC-CATA
1 TATAGCTTACTCACAACTCATA
125506 TATAGCTTACTCACAACTCATA
1 TATAGCTTACTCACAACTCATA
*
125528 TTTAGCTTACTCACAACTCATA
1 TATAGCTTACTCACAACTCATA
125550 AATCTAAATT
Statistics
Matches: 41, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
20 14 0.34
21 2 0.05
22 25 0.61
ACGTcount: A:0.34, C:0.28, G:0.05, T:0.33
Consensus pattern (22 bp):
TATAGCTTACTCACAACTCATA
Left flanking sequence: Indices 124986 -- 125485
CACCGTGGACACCCTGGGCTCGGCCACCCGGCGGGTGGTGTCGTGGCTGGGAGCGTTGCTCCAGG
CTCCGCACTACGGGGTGCGCGAGTTGATGGACCTGATCCCGTCGGAGGTGTACGTGACCAAGATC
GCCACAGCCTCGCCGTGCCACCAGTACGGGGTGGGGTCCAACTCGTTCATCACCCACGTCAACGA
CGTGGCCACCCCGACGTTGAAGCAGTTCATCGCGGTGGTGACCCAGATCCCCGACAACACCTACG
TCAAGGTGCGGGCGGTGACGTTTGACAACGTTCCCTACGCGCTTTCGATCAAGATCAACTACCAC
TACTTCCCCACGGGCGAGTTCAAGAAGGACGCCGCCGGCAAGTGGGTCGAGACCGAGTTTTAGCA
TATGGGCAGGTAAATAATAGATATGAGATAAAGGTGAAGAGTGGGGTTGGTGACACAACGCGTGG
GTGGACGACGATGAAACGGTGTCAATTGCATAGGTACTCACACAT
Right flanking sequence: Indices 125550 -- 126049
AATCTAAATTTATACTCTTTCTTTAAATGGATTATACTTCATTTATCATTATATTTCTAACAAAT
CCACGGGGATGACTTACCAGATCTTCAACTACAAGAACCTTCACTTTTTGACAGCAATTGGCATC
ACTTTTAAAATTTCACTCAAAAAACACCATACTCATCTTTTATTCTTCCTATTCGAATCGTTCCT
CAAATGCACCCAGGCCTTCACTTCGCATATTTTACGCGCGTTGACAGCCTAAACAAACAAACGCG
GTCTAGCCCATGTCGACCATTGCAGGCAGTGGTCACGGAACCGGCGATAAGGCAGCATCGCTACC
GAAACAGAAACCCCGAGGGGGTCTTCTGATGTTCCGTCGCTACGTTGAACGCACGTTCGGCCACA
AAACGCAAGTGCCAGAGCCGAAGGTACAGGAAGAGGAGGAGGAAGAGGAAGAGGACGAGGAGGAT
AGTGAAGACGAGGCATCACTGTCTACCCAAGAACCCACTGGAAAG
Found at i:125981 original size:6 final size:6
Alignment explanation
Indices: 125967--126000 Score: 50
Period size: 6 Copynumber: 5.7 Consensus size: 6
125957 CCGAAGGTAC
* *
125967 AGGAAG AGGAGG AGGAAG AGGAAG AGGACG AGGA
1 AGGAAG AGGAAG AGGAAG AGGAAG AGGAAG AGGA
126001 GGATAGTGAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.44, C:0.03, G:0.53, T:0.00
Consensus pattern (6 bp):
AGGAAG
Left flanking sequence: Indices 125467 -- 125966
TGCATAGGTACTCACACATTATAGCTTACTCACACCATATATAGCTTACTCACAACTCATATTTA
GCTTACTCACAACTCATAAATCTAAATTTATACTCTTTCTTTAAATGGATTATACTTCATTTATC
ATTATATTTCTAACAAATCCACGGGGATGACTTACCAGATCTTCAACTACAAGAACCTTCACTTT
TTGACAGCAATTGGCATCACTTTTAAAATTTCACTCAAAAAACACCATACTCATCTTTTATTCTT
CCTATTCGAATCGTTCCTCAAATGCACCCAGGCCTTCACTTCGCATATTTTACGCGCGTTGACAG
CCTAAACAAACAAACGCGGTCTAGCCCATGTCGACCATTGCAGGCAGTGGTCACGGAACCGGCGA
TAAGGCAGCATCGCTACCGAAACAGAAACCCCGAGGGGGTCTTCTGATGTTCCGTCGCTACGTTG
AACGCACGTTCGGCCACAAAACGCAAGTGCCAGAGCCGAAGGTAC
Right flanking sequence: Indices 126001 -- 126500
GGATAGTGAAGACGAGGCATCACTGTCTACCCAAGAACCCACTGGAAAGTTGTCTAGACCACAAT
TGGAGCCTGTTACGCTGCCGAAGCCAGCTCGATCTGCAGCCACCGCCAAGTCCTTCGATGACTCG
CTAGAGCCTGCGCGACCCACTCTTTTAGAGCTTGAGAGCGAGCTGGAAGAGTATGGCTCACAAGA
CACAGCAATTTCGCTGCTCGAAGTGCACCAGCTAGCCTCTCAGGATCTGGGTGCAGCACACACAG
ACGCCTCAGAAGACGCACCCGAAGACATCGACCTCGTGGAGGTGGACTACGCTGGTGAGCCAGGA
GACGAAGAGCCTGAAAAAGCGTCGGAGCTCTTTGTTGGGGAACAGAGCGACGACGAAAGCAGCGA
GGACATCGTCGAGGTTGGCTACGTGCCGCTAGAGTCTACGCACAGACGCCATTGGTGGCTCAAAC
GACGGGCGTGCCAGACCCGGCCAGAGGCTGTGGAGGAGCCTTTAG
Found at i:125984 original size:12 final size:12
Alignment explanation
Indices: 125967--126003 Score: 56
Period size: 12 Copynumber: 3.1 Consensus size: 12
125957 CCGAAGGTAC
125967 AGGAAGAGGAGG
1 AGGAAGAGGAGG
*
125979 AGGAAGAGGAAG
1 AGGAAGAGGAGG
*
125991 AGGACGAGGAGG
1 AGGAAGAGGAGG
126003 A
1 A
126004 TAGTGAAGAC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.43, C:0.03, G:0.54, T:0.00
Consensus pattern (12 bp):
AGGAAGAGGAGG
Left flanking sequence: Indices 125467 -- 125966
TGCATAGGTACTCACACATTATAGCTTACTCACACCATATATAGCTTACTCACAACTCATATTTA
GCTTACTCACAACTCATAAATCTAAATTTATACTCTTTCTTTAAATGGATTATACTTCATTTATC
ATTATATTTCTAACAAATCCACGGGGATGACTTACCAGATCTTCAACTACAAGAACCTTCACTTT
TTGACAGCAATTGGCATCACTTTTAAAATTTCACTCAAAAAACACCATACTCATCTTTTATTCTT
CCTATTCGAATCGTTCCTCAAATGCACCCAGGCCTTCACTTCGCATATTTTACGCGCGTTGACAG
CCTAAACAAACAAACGCGGTCTAGCCCATGTCGACCATTGCAGGCAGTGGTCACGGAACCGGCGA
TAAGGCAGCATCGCTACCGAAACAGAAACCCCGAGGGGGTCTTCTGATGTTCCGTCGCTACGTTG
AACGCACGTTCGGCCACAAAACGCAAGTGCCAGAGCCGAAGGTAC
Right flanking sequence: Indices 126004 -- 126503
TAGTGAAGACGAGGCATCACTGTCTACCCAAGAACCCACTGGAAAGTTGTCTAGACCACAATTGG
AGCCTGTTACGCTGCCGAAGCCAGCTCGATCTGCAGCCACCGCCAAGTCCTTCGATGACTCGCTA
GAGCCTGCGCGACCCACTCTTTTAGAGCTTGAGAGCGAGCTGGAAGAGTATGGCTCACAAGACAC
AGCAATTTCGCTGCTCGAAGTGCACCAGCTAGCCTCTCAGGATCTGGGTGCAGCACACACAGACG
CCTCAGAAGACGCACCCGAAGACATCGACCTCGTGGAGGTGGACTACGCTGGTGAGCCAGGAGAC
GAAGAGCCTGAAAAAGCGTCGGAGCTCTTTGTTGGGGAACAGAGCGACGACGAAAGCAGCGAGGA
CATCGTCGAGGTTGGCTACGTGCCGCTAGAGTCTACGCACAGACGCCATTGGTGGCTCAAACGAC
GGGCGTGCCAGACCCGGCCAGAGGCTGTGGAGGAGCCTTTAGCGA
Found at i:126892 original size:18 final size:18
Alignment explanation
Indices: 126869--126909 Score: 66
Period size: 18 Copynumber: 2.3 Consensus size: 18
126859 ACTGCCTGAA
126869 CCTGAGG-TCCTGGCCGAG
1 CCTGAGGCT-CTGGCCGAG
126887 CCTGAGGCTCTGGCCGAG
1 CCTGAGGCTCTGGCCGAG
126905 CCTGA
1 CCTGA
126910 ATCTCCTCTG
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
18 21 0.95
19 1 0.05
ACGTcount: A:0.12, C:0.34, G:0.37, T:0.17
Consensus pattern (18 bp):
CCTGAGGCTCTGGCCGAG
Left flanking sequence: Indices 126369 -- 126868
AGAGCGACGACGAAAGCAGCGAGGACATCGTCGAGGTTGGCTACGTGCCGCTAGAGTCTACGCAC
AGACGCCATTGGTGGCTCAAACGACGGGCGTGCCAGACCCGGCCAGAGGCTGTGGAGGAGCCTTT
AGCGAAAAGGCCACGCAAAGCTCGTACGAAACGGGTTGAGAAGGTGGAAAAGAAGGCCGAAAAGG
AGTCTAAGAAGGTTCTGAAGGAGATCCCCGAGAAAGCGGCAAAGAAGGCCCAAAAAGAGGCTCAG
AAGGTCACGAAAAAGGCACCACCCAGGCGTACGCAAAGGAAGGTTCAAATAGTGGAGAAGGCTCC
GCGGATCGAGGTGGTGATTTCAGACTCGGAGGACGAGCCAGAGCAGGAGGAGGAGTTTGCGCCAG
TGAACCAGCTTGAGACTTTTGAAGTTGAGAATGAGCCAGAAGCTCTGCCCGAGCCCGAGGCTCTT
CTGCCCGAACCAAAAGCCCTGCCCGAACCCGTGAAACTGCCTGAA
Right flanking sequence: Indices 126910 -- 127409
ATCTCCTCTGCTTGAACCCAAAGTTACTCTGCTTGAATCTGAGGGTACCCTGTCCAAGCGTCCGA
TTTCTTTGCTCGATATCATGGGCAGTCTGCCCGAAGACACGCTGCCCGAAGTCACTCTGCCCGAA
CCATCTCCAAAGCCTCAGCCTGCCAACCAAGCACATTCCAAGAAAGTGGTCGTACCCAACGACAA
GCACCACTCGTCTTCTGAGCCTTGGGAGGAGACCGGGTGCTTCTCTTGCGAGGAACGGTTCAACG
AGTACCTCCAGAACCCCACCCAAGTAGCTCTCCGAACGAAGCACGACCACGAGTTCACTGACGAC
GCTTCCCCTGGCTTTGAAGGCTTACTCAAAGCACTCTACGGCGACGATGCTCAATGGCGCCCTCA
ACAGCTCGAGGTGATCGAGTCTGTTGCTGGTGGAGCACCCGTTACCCTCGGAGTGTTTGCACCGG
GAGCTGGGGCATCCACGTGCTGGTTGACCCCAGCCACCGCTGCAA
Found at i:127021 original size:15 final size:15
Alignment explanation
Indices: 127001--127039 Score: 60
Period size: 15 Copynumber: 2.6 Consensus size: 15
126991 CATGGGCAGT
127001 CTGCCCGAAGACACG
1 CTGCCCGAAGACACG
* *
127016 CTGCCCGAAGTCACT
1 CTGCCCGAAGACACG
127031 CTGCCCGAA
1 CTGCCCGAA
127040 CCATCTCCAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.23, C:0.41, G:0.23, T:0.13
Consensus pattern (15 bp):
CTGCCCGAAGACACG
Left flanking sequence: Indices 126501 -- 127000
CGAAAAGGCCACGCAAAGCTCGTACGAAACGGGTTGAGAAGGTGGAAAAGAAGGCCGAAAAGGAG
TCTAAGAAGGTTCTGAAGGAGATCCCCGAGAAAGCGGCAAAGAAGGCCCAAAAAGAGGCTCAGAA
GGTCACGAAAAAGGCACCACCCAGGCGTACGCAAAGGAAGGTTCAAATAGTGGAGAAGGCTCCGC
GGATCGAGGTGGTGATTTCAGACTCGGAGGACGAGCCAGAGCAGGAGGAGGAGTTTGCGCCAGTG
AACCAGCTTGAGACTTTTGAAGTTGAGAATGAGCCAGAAGCTCTGCCCGAGCCCGAGGCTCTTCT
GCCCGAACCAAAAGCCCTGCCCGAACCCGTGAAACTGCCTGAACCTGAGGTCCTGGCCGAGCCTG
AGGCTCTGGCCGAGCCTGAATCTCCTCTGCTTGAACCCAAAGTTACTCTGCTTGAATCTGAGGGT
ACCCTGTCCAAGCGTCCGATTTCTTTGCTCGATATCATGGGCAGT
Right flanking sequence: Indices 127040 -- 127539
CCATCTCCAAAGCCTCAGCCTGCCAACCAAGCACATTCCAAGAAAGTGGTCGTACCCAACGACAA
GCACCACTCGTCTTCTGAGCCTTGGGAGGAGACCGGGTGCTTCTCTTGCGAGGAACGGTTCAACG
AGTACCTCCAGAACCCCACCCAAGTAGCTCTCCGAACGAAGCACGACCACGAGTTCACTGACGAC
GCTTCCCCTGGCTTTGAAGGCTTACTCAAAGCACTCTACGGCGACGATGCTCAATGGCGCCCTCA
ACAGCTCGAGGTGATCGAGTCTGTTGCTGGTGGAGCACCCGTTACCCTCGGAGTGTTTGCACCGG
GAGCTGGGGCATCCACGTGCTGGTTGACCCCAGCCACCGCTGCAAAGGCCAAGACCACGTTGATC
GTGGTTCGGGACGAGCTCGCCGTTGACACCGTTCTCTCGCTTGAAGACCAGCTACCGCGAAACTA
CTTGTTGTTCACCAAGTTCAAGAACTCGGTGGCCCTCACCAAGCG
Found at i:138960 original size:23 final size:24
Alignment explanation
Indices: 138930--138981 Score: 79
Period size: 23 Copynumber: 2.2 Consensus size: 24
138920 AATCAGAATG
* *
138930 AAACCCAAGTCAAAC-CTCTCCTC
1 AAACCCAAGTCAAACACCCCCCTC
138953 AAACCCAAGTCAAACACCCCCCTC
1 AAACCCAAGTCAAACACCCCCCTC
138977 AAACC
1 AAACC
138982 TCTCAAACCA
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
23 15 0.58
24 11 0.42
ACGTcount: A:0.38, C:0.46, G:0.04, T:0.12
Consensus pattern (24 bp):
AAACCCAAGTCAAACACCCCCCTC
Left flanking sequence: Indices 138430 -- 138929
CAAAGAAGTCCATGGTGGGTGGGTAGGTGGATCGTGTGATAGGAATTATGCAGGAGATCGTAGAC
GGTGAGAGATAAAGGGAGGGGAAAGAGCAATGGCTAGTGGAGTAGTTGTTGGGGTGTTGTGGCTA
TGGTGGTGTTTTTGGTGGTAATTCTTGGTGGTGGTATGAATGTGGAAGGGCGGTGTTTGAGTTGT
GTGGCTTGGCGTTCTGACGATGGTGAGTGGCAGAGACAAAGCAGTGACAAAGACAAAGCAGTGTG
GTAGAAGTAGATAAGAAGTGAAACAGTGAACAATATTTGAAAATTGGCTGCCACTCTTAAACCGT
GGCTATCTACACGTGACTCTAGTTCGGTCTGATTGTGGCCCTTTCAATACACAACCAGATTCATG
AATACTACATTAGTTGGTAGCTTACTAACATGGTCTATCAAACAAAACCAGTCCACCCACTTGGT
TCCACCGAGCCCAGCCCAGCAACTATTTAGCAACTAATCAGAATG
Right flanking sequence: Indices 138982 -- 139481
TCTCAAACCAATCGTGTATTCATTAAACGTAACCTACAAATACTGCTGGCGCAAGTTCTGCACCA
TGCTCTGCTTGTCGCTCGGCAACGAGCGGATCTCCAGCTCCGGGAGCTGCAACACCTGTGCCACC
AACTCGGCCTCCTGCGGAGGCAACGCCGCCAACTTCTGCTGGGTCTGCGGCGGCAACAGCGGCCA
CTTGGAGTTTTGCGGTAGCAGCTGCGGCGGCGGCGTGGGAGTATGCTGTTGTTGCTGCGGGCGGC
GGCGGTCGTTCTGGTACCCCTGGTTGTACCCCTGGCCGTATCCCTGGCCCTGGTTGTAGCCCTGG
CCCTGGTTCTGGTAGCCTTGGTTCTGGTAGCCCTGGTTCTGGTACCCCTGGCCCTGGTAGCCCTG
CGGCTTCTGGTACCCCTGGTTGTACCCGTTGAACGTCTGCTGATGCGGCACCGGAGGCGTCAGCA
CCGCAGGCGTCGCCGCCGGCGGGTTCGCGGTGACGTCCTTGAGCA
Found at i:139294 original size:18 final size:18
Alignment explanation
Indices: 139271--139312 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
139261 CTGGTTGTAC
*
139271 CCCTGGCCGTATCCCTGG
1 CCCTGGCCGTAGCCCTGG
**
139289 CCCTGGTTGTAGCCCTGG
1 CCCTGGCCGTAGCCCTGG
139307 CCCTGG
1 CCCTGG
139313 TTCTGGTAGC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.05, C:0.40, G:0.31, T:0.24
Consensus pattern (18 bp):
CCCTGGCCGTAGCCCTGG
Left flanking sequence: Indices 138771 -- 139270
CTCTAGTTCGGTCTGATTGTGGCCCTTTCAATACACAACCAGATTCATGAATACTACATTAGTTG
GTAGCTTACTAACATGGTCTATCAAACAAAACCAGTCCACCCACTTGGTTCCACCGAGCCCAGCC
CAGCAACTATTTAGCAACTAATCAGAATGAAACCCAAGTCAAACCTCTCCTCAAACCCAAGTCAA
ACACCCCCCTCAAACCTCTCAAACCAATCGTGTATTCATTAAACGTAACCTACAAATACTGCTGG
CGCAAGTTCTGCACCATGCTCTGCTTGTCGCTCGGCAACGAGCGGATCTCCAGCTCCGGGAGCTG
CAACACCTGTGCCACCAACTCGGCCTCCTGCGGAGGCAACGCCGCCAACTTCTGCTGGGTCTGCG
GCGGCAACAGCGGCCACTTGGAGTTTTGCGGTAGCAGCTGCGGCGGCGGCGTGGGAGTATGCTGT
TGTTGCTGCGGGCGGCGGCGGTCGTTCTGGTACCCCTGGTTGTAC
Right flanking sequence: Indices 139313 -- 139812
TTCTGGTAGCCTTGGTTCTGGTAGCCCTGGTTCTGGTACCCCTGGCCCTGGTAGCCCTGCGGCTT
CTGGTACCCCTGGTTGTACCCGTTGAACGTCTGCTGATGCGGCACCGGAGGCGTCAGCACCGCAG
GCGTCGCCGCCGGCGGGTTCGCGGTGACGTCCTTGAGCACCTCGTCGTCAATGAGCCCCATCAAC
AAGAGCGCCTGGGCAGCAGCAGGGGTCACCCCCGGGAAGTTGAGCAACTCGTTCACCTTGGCGGT
CTCGTTGCTCGACAACATGTTTTTGAGGGTGGCAATCAACTGGATGAGCTCGGGAGGCGAGATTT
TCGAGAGCGTCTCGTTGACGCGGTCGTTGACGGCAAACGGGGTCAGCCGGGTGGGCATGGGCGGC
AAGTTGGAGGTGGCCTGGGTGAATTTGGCCGGCACCGTGCCCTGCAGCGCCGGGATGATCCCCGT
GCGCGGGCTCCCCACCGCCGGCGACCCGCCACGCGGGTACCCGTT
Found at i:139330 original size:15 final size:15
Alignment explanation
Indices: 139306--139392 Score: 102
Period size: 15 Copynumber: 5.6 Consensus size: 15
139296 TGTAGCCCTG
139306 GCCCTGGTTCTGGTA
1 GCCCTGGTTCTGGTA
*
139321 GCCTTGGTTCTGGTA
1 GCCCTGGTTCTGGTA
139336 GCCCTGGTTCTGGTA
1 GCCCTGGTTCTGGTA
* **
139351 CCCCTGGCCCTGGTA
1 GCCCTGGTTCTGGTA
139366 GCCCTGCGGCTTCTGGTA
1 GCCCT--GG-TTCTGGTA
*
139384 CCCCTGGTT
1 GCCCTGGTT
139393 GTACCCGTTG
Statistics
Matches: 60, Mismatches: 9, Indels: 6
0.80 0.12 0.08
Matches are distributed among these distances:
15 46 0.77
16 2 0.03
17 2 0.03
18 10 0.17
ACGTcount: A:0.06, C:0.32, G:0.31, T:0.31
Consensus pattern (15 bp):
GCCCTGGTTCTGGTA
Left flanking sequence: Indices 138806 -- 139305
CAACCAGATTCATGAATACTACATTAGTTGGTAGCTTACTAACATGGTCTATCAAACAAAACCAG
TCCACCCACTTGGTTCCACCGAGCCCAGCCCAGCAACTATTTAGCAACTAATCAGAATGAAACCC
AAGTCAAACCTCTCCTCAAACCCAAGTCAAACACCCCCCTCAAACCTCTCAAACCAATCGTGTAT
TCATTAAACGTAACCTACAAATACTGCTGGCGCAAGTTCTGCACCATGCTCTGCTTGTCGCTCGG
CAACGAGCGGATCTCCAGCTCCGGGAGCTGCAACACCTGTGCCACCAACTCGGCCTCCTGCGGAG
GCAACGCCGCCAACTTCTGCTGGGTCTGCGGCGGCAACAGCGGCCACTTGGAGTTTTGCGGTAGC
AGCTGCGGCGGCGGCGTGGGAGTATGCTGTTGTTGCTGCGGGCGGCGGCGGTCGTTCTGGTACCC
CTGGTTGTACCCCTGGCCGTATCCCTGGCCCTGGTTGTAGCCCTG
Right flanking sequence: Indices 139393 -- 139892
GTACCCGTTGAACGTCTGCTGATGCGGCACCGGAGGCGTCAGCACCGCAGGCGTCGCCGCCGGCG
GGTTCGCGGTGACGTCCTTGAGCACCTCGTCGTCAATGAGCCCCATCAACAAGAGCGCCTGGGCA
GCAGCAGGGGTCACCCCCGGGAAGTTGAGCAACTCGTTCACCTTGGCGGTCTCGTTGCTCGACAA
CATGTTTTTGAGGGTGGCAATCAACTGGATGAGCTCGGGAGGCGAGATTTTCGAGAGCGTCTCGT
TGACGCGGTCGTTGACGGCAAACGGGGTCAGCCGGGTGGGCATGGGCGGCAAGTTGGAGGTGGCC
TGGGTGAATTTGGCCGGCACCGTGCCCTGCAGCGCCGGGATGATCCCCGTGCGCGGGCTCCCCAC
CGCCGGCGACCCGCCACGCGGGTACCCGTTGCCGTACACCTGGTTGGGGTCCAAGCCCGGCACGT
TCTTTGCCATTTCTGCCGGAAGCTTGACGTTGGGCGGCACGAAGC
Found at i:140352 original size:10 final size:9
Alignment explanation
Indices: 140317--140350 Score: 59
Period size: 9 Copynumber: 3.7 Consensus size: 9
140307 TTAGGGATGG
140317 GCGTGTGGA
1 GCGTGTGGA
140326 GCGTGTGGA
1 GCGTGTGGA
140335 GCGTGTAGGA
1 GCGTGT-GGA
140345 GCGTGT
1 GCGTGT
140351 AGATGATGAG
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
9 15 0.62
10 9 0.38
ACGTcount: A:0.12, C:0.12, G:0.53, T:0.24
Consensus pattern (9 bp):
GCGTGTGGA
Left flanking sequence: Indices 139817 -- 140316
TACACCTGGTTGGGGTCCAAGCCCGGCACGTTCTTTGCCATTTCTGCCGGAAGCTTGACGTTGGG
CGGCACGAAGCGGGCGTCGGGCACCACCACCAGCTTACTCAGCGGGTCGGCGTTGCCCTTGAGGA
ACCCCTCCTTCAGCAGCTCGGCGCGGAGCTTTTTGAACAGGCCGTCGGGCTGGATGATCCGCACC
TGGGGGAGCAATTGGGTGGCGCGGGCCGCGTCCTGGGGCGTCCGGTACTCGCAGAAGGCGTAGCC
CTTGTTTTTACCCTGGAAGTCGAACCCGAGCCGCATGTCGACGAGGCGGGCGGCCGAGCCCGCCA
CCGACTTGAGGACGTTCTCGTCCCAGTCGAACGGGACCTGTCCGACGTAGAGAATCGTGGATGTC
ATCTCGGGCTACGCGATGGTTGTCGGGGTTGTCGCGAACACGAAGGTTTTGCAGCACGCGAAAAG
TGCGGTGGTGGGAAGCGGTGGAGTGGTAGGGGAAATTAGGGATGG
Right flanking sequence: Indices 140351 -- 140850
AGATGATGAGGGTTGTACTATCTAGGGTTAGAGGAGTTGTTTCAAAGTGGTGGCTGAAGTCAATG
GGCGAAGGAGGGGGTTAGGTTTCTGTAGGCGGAACGCGTGAGTAGCGTAGTGGTTCAAGAGGAAT
GACTACGGATAATTGGGATACAGAGGGGTCTTGCGTTTCGTGTTGTGATTTGTATACTAGTTGTT
ACAGCGACCAGTTTGCTAGACTTATTGTAGGTAGCCTAATCTGATCTCACAAGACTAGTATGCTT
ACTGTGGCTCCTCGAGCACTGTGCATAAAAAGAAACAGGGTTATATAAATACTGAGGCAAAGGCG
TGGAAACTGGTCTGTTCGTAGAAGGCATGATGCTAGGGTCTACATTGAGGGATGCTAGGCTGGTC
ATCCCAACTTCTATTAAACTGGTGAGACAGGATCTGTTCGTCTATCTGGATATCCCACGTTTCCA
GCACGCAGTCTAGAACCTCATAAGAGTACTTAATTTAAATGACAA
Found at i:140911 original size:19 final size:19
Alignment explanation
Indices: 140887--141009 Score: 74
Period size: 20 Copynumber: 6.3 Consensus size: 19
140877 CTACAATCTT
*
140887 TGGCCACTATCCTACATTC
1 TGGCCACTATCCTACACTC
140906 TGGCCACTATTCC-ACCACTC
1 TGGCCACTA-TCCTA-CACTC
*
140926 TGGCCACTATTCTACCACTC
1 TGGCCACTATCCTA-CACTC
* * *
140946 TGACCACCAT-TTACATCTC
1 TGGCCACTATCCTACA-CTC
* **
140965 TGTCCACCGT-CTACAATCTC
1 TGGCCACTATCCTAC-A-CTC
*
140985 TGGCCACCAAT-CTACACTC
1 TGGCCA-CTATCCTACACTC
141004 TGGCCA
1 TGGCCA
141010 TCGTTCACCA
Statistics
Matches: 87, Mismatches: 11, Indels: 12
0.79 0.10 0.11
Matches are distributed among these distances:
18 2 0.02
19 37 0.43
20 42 0.48
21 6 0.07
ACGTcount: A:0.22, C:0.40, G:0.11, T:0.28
Consensus pattern (19 bp):
TGGCCACTATCCTACACTC
Left flanking sequence: Indices 140387 -- 140886
TTGTTTCAAAGTGGTGGCTGAAGTCAATGGGCGAAGGAGGGGGTTAGGTTTCTGTAGGCGGAACG
CGTGAGTAGCGTAGTGGTTCAAGAGGAATGACTACGGATAATTGGGATACAGAGGGGTCTTGCGT
TTCGTGTTGTGATTTGTATACTAGTTGTTACAGCGACCAGTTTGCTAGACTTATTGTAGGTAGCC
TAATCTGATCTCACAAGACTAGTATGCTTACTGTGGCTCCTCGAGCACTGTGCATAAAAAGAAAC
AGGGTTATATAAATACTGAGGCAAAGGCGTGGAAACTGGTCTGTTCGTAGAAGGCATGATGCTAG
GGTCTACATTGAGGGATGCTAGGCTGGTCATCCCAACTTCTATTAAACTGGTGAGACAGGATCTG
TTCGTCTATCTGGATATCCCACGTTTCCAGCACGCAGTCTAGAACCTCATAAGAGTACTTAATTT
AAATGACAATCATACTCTCCGGCCATCATAAAACCCTACAATCTT
Right flanking sequence: Indices 141010 -- 141509
TCGTTCACCATTATCCTGGCCATCTGACCATCTGACCACCCCTCCTCACCCAACTAGTCTCATTA
TCATGTCTATTATCTACTGCACGCGTTCCGCCCCCAGGAGCTTCACCGCAGCACCGTACTTCTGC
AACTTCGTCAACAACCCGTCGCCCTGCTTGATCAACTGGAAGTACTGGTTGTTCTTCAGGTCGGG
CCGGTTGGTCTCAATGATGCCGTTCACCTTGTCGATGGTGCAGTTCAACTTTTTGTTGGGGATGA
ACCGCACCAAGTCCGCGTCCAAAAACTGCTCGGACACGTTGAAGTTCTGCGCCATCAGCTTGAGC
AGCAACAGCTTGTACAGCTCCAACAACTGGCGGTACGCCTTGCACCGCATCTCGCGCAAAAAGTA
GTTGGCGTGCTGGTGCAAGTACTTCAGCGGCAACAACACCTCGTCGTACACCTGCATGATGTCGC
CAAAGAAGTACCGGTACTGGCAGGTGTACAAGTTGGTGGTCAAGT
Found at i:140929 original size:20 final size:20
Alignment explanation
Indices: 140887--140952 Score: 82
Period size: 20 Copynumber: 3.4 Consensus size: 20
140877 CTACAATCTT
*
140887 TGGCCACTA-TCCTA-CATTC
1 TGGCCACTATTCC-ACCACTC
140906 TGGCCACTATTCCACCACTC
1 TGGCCACTATTCCACCACTC
*
140926 TGGCCACTATTCTACCACTC
1 TGGCCACTATTCCACCACTC
*
140946 TGACCAC
1 TGGCCAC
140953 CATTTACATC
Statistics
Matches: 42, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
19 10 0.24
20 32 0.76
ACGTcount: A:0.21, C:0.41, G:0.11, T:0.27
Consensus pattern (20 bp):
TGGCCACTATTCCACCACTC
Left flanking sequence: Indices 140387 -- 140886
TTGTTTCAAAGTGGTGGCTGAAGTCAATGGGCGAAGGAGGGGGTTAGGTTTCTGTAGGCGGAACG
CGTGAGTAGCGTAGTGGTTCAAGAGGAATGACTACGGATAATTGGGATACAGAGGGGTCTTGCGT
TTCGTGTTGTGATTTGTATACTAGTTGTTACAGCGACCAGTTTGCTAGACTTATTGTAGGTAGCC
TAATCTGATCTCACAAGACTAGTATGCTTACTGTGGCTCCTCGAGCACTGTGCATAAAAAGAAAC
AGGGTTATATAAATACTGAGGCAAAGGCGTGGAAACTGGTCTGTTCGTAGAAGGCATGATGCTAG
GGTCTACATTGAGGGATGCTAGGCTGGTCATCCCAACTTCTATTAAACTGGTGAGACAGGATCTG
TTCGTCTATCTGGATATCCCACGTTTCCAGCACGCAGTCTAGAACCTCATAAGAGTACTTAATTT
AAATGACAATCATACTCTCCGGCCATCATAAAACCCTACAATCTT
Right flanking sequence: Indices 140953 -- 141452
CATTTACATCTCTGTCCACCGTCTACAATCTCTGGCCACCAATCTACACTCTGGCCATCGTTCAC
CATTATCCTGGCCATCTGACCATCTGACCACCCCTCCTCACCCAACTAGTCTCATTATCATGTCT
ATTATCTACTGCACGCGTTCCGCCCCCAGGAGCTTCACCGCAGCACCGTACTTCTGCAACTTCGT
CAACAACCCGTCGCCCTGCTTGATCAACTGGAAGTACTGGTTGTTCTTCAGGTCGGGCCGGTTGG
TCTCAATGATGCCGTTCACCTTGTCGATGGTGCAGTTCAACTTTTTGTTGGGGATGAACCGCACC
AAGTCCGCGTCCAAAAACTGCTCGGACACGTTGAAGTTCTGCGCCATCAGCTTGAGCAGCAACAG
CTTGTACAGCTCCAACAACTGGCGGTACGCCTTGCACCGCATCTCGCGCAAAAAGTAGTTGGCGT
GCTGGTGCAAGTACTTCAGCGGCAACAACACCTCGTCGTACACCT
Found at i:142740 original size:15 final size:15
Alignment explanation
Indices: 142720--142756 Score: 65
Period size: 15 Copynumber: 2.5 Consensus size: 15
142710 ACACTGGTTC
142720 ACAACACCTATACTA
1 ACAACACCTATACTA
*
142735 ACAACACCTCTACTA
1 ACAACACCTATACTA
142750 ACAACAC
1 ACAACAC
142757 ATCCCAAGAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.46, C:0.38, G:0.00, T:0.16
Consensus pattern (15 bp):
ACAACACCTATACTA
Left flanking sequence: Indices 142220 -- 142719
GTGGTGTATAAGAACTCCGTCTCCAGGAGCGTGTAGTCGGGAATCCGCGGGATCTCGTCGCTCAT
GGTTGTGGTGCTAGCACCTCGCGGTGATATTTCGCACTGGTGGCGAACCGCACGCAGGAGCAAGA
GGGGTGGAAGGCGGTGAGTGGAAGGAGGTGGGTGAAGGAAAAATGAGGAAGAAAGGAGGGGGAGG
GGAGGATGGAAGAGGACAGAGGAGGTAGTAGAGGACATCGAGGAGGTAGTAGAGGACATAGAGAA
GGATAAGAGGACGTACAGATAAATCGTAGAGACAGGTGAGAGACCGCTTGGGAGCTAGACAATAT
ACTTGGCTGTGACATAACACAGGAATTGCTTAGTGGGGTGTGTTGGCAGCGGACATTGAGTGTAG
TGTGATCTACAAAAACTGCGGAATCGCAGTCTTCCTTACCATTCTCGGGTCGATGCCATCTGCGT
TGGTTCCCACCTTCTTCTTCGCCCCATACTTTTAAACACTGGTTC
Right flanking sequence: Indices 142757 -- 143256
ATCCCAAGAAACCATCCCAAGATACCATCCCATGATTCCATCCCAAGATCCCATCCCCAGACCCC
ATCCTCACATAGCTCTTACACCACTCTCCTACCCATTAGTATCCATTCTCTATCCTAGTACAACC
CGAGCTTATAATCATCAGCGTCAAAGTACCCGCACAACACGGTGCGGTCGTTATACTGCCGCCCG
GCCACCTTGTTGATCACCTCGAAGGCCAGTTCGGGCGAGTCAAACTCGACAAAAACCTTGCCCAA
CCCGCGCGGCAGGTCGTCGGCAAGCCCCATCACGTACCCCTGCGGCGGCCGGGGAATCACCATCG
ACACCACCGGGGCGATTTTCGCCAACTCGTGGCGGAAGTCCGCCACCACAAACTCGTAGTTGTCG
TCGTCCACCAAGTCGGCCCCGGTGACGCAGTTGACAAACTGCACCACCAGCAGCTTGCGGTGCTC
GCTGATCCCCTGGCGGTGCACCAACTTGGGCAACAGCTCGCCGGT
Found at i:142774 original size:13 final size:13
Alignment explanation
Indices: 142756--142813 Score: 80
Period size: 13 Copynumber: 4.5 Consensus size: 13
142746 ACTAACAACA
*
142756 CATCCCAAGAAAC
1 CATCCCAAGATAC
142769 CATCCCAAGATAC
1 CATCCCAAGATAC
* *
142782 CATCCCATGATTC
1 CATCCCAAGATAC
*
142795 CATCCCAAGATCC
1 CATCCCAAGATAC
142808 CATCCC
1 CATCCC
142814 CAGACCCCAT
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
13 40 1.00
ACGTcount: A:0.33, C:0.43, G:0.07, T:0.17
Consensus pattern (13 bp):
CATCCCAAGATAC
Left flanking sequence: Indices 142256 -- 142755
TCGGGAATCCGCGGGATCTCGTCGCTCATGGTTGTGGTGCTAGCACCTCGCGGTGATATTTCGCA
CTGGTGGCGAACCGCACGCAGGAGCAAGAGGGGTGGAAGGCGGTGAGTGGAAGGAGGTGGGTGAA
GGAAAAATGAGGAAGAAAGGAGGGGGAGGGGAGGATGGAAGAGGACAGAGGAGGTAGTAGAGGAC
ATCGAGGAGGTAGTAGAGGACATAGAGAAGGATAAGAGGACGTACAGATAAATCGTAGAGACAGG
TGAGAGACCGCTTGGGAGCTAGACAATATACTTGGCTGTGACATAACACAGGAATTGCTTAGTGG
GGTGTGTTGGCAGCGGACATTGAGTGTAGTGTGATCTACAAAAACTGCGGAATCGCAGTCTTCCT
TACCATTCTCGGGTCGATGCCATCTGCGTTGGTTCCCACCTTCTTCTTCGCCCCATACTTTTAAA
CACTGGTTCACAACACCTATACTAACAACACCTCTACTAACAACA
Right flanking sequence: Indices 142814 -- 143313
CAGACCCCATCCTCACATAGCTCTTACACCACTCTCCTACCCATTAGTATCCATTCTCTATCCTA
GTACAACCCGAGCTTATAATCATCAGCGTCAAAGTACCCGCACAACACGGTGCGGTCGTTATACT
GCCGCCCGGCCACCTTGTTGATCACCTCGAAGGCCAGTTCGGGCGAGTCAAACTCGACAAAAACC
TTGCCCAACCCGCGCGGCAGGTCGTCGGCAAGCCCCATCACGTACCCCTGCGGCGGCCGGGGAAT
CACCATCGACACCACCGGGGCGATTTTCGCCAACTCGTGGCGGAAGTCCGCCACCACAAACTCGT
AGTTGTCGTCGTCCACCAAGTCGGCCCCGGTGACGCAGTTGACAAACTGCACCACCAGCAGCTTG
CGGTGCTCGCTGATCCCCTGGCGGTGCACCAACTTGGGCAACAGCTCGCCGGTGGCCGCCACCGT
CTGCACCGCGCCCATACACCCGTAGTAGGCGCGGGTCACCAGCGG
Found at i:142822 original size:13 final size:13
Alignment explanation
Indices: 142756--142825 Score: 59
Period size: 13 Copynumber: 5.4 Consensus size: 13
142746 ACTAACAACA
**
142756 CATCCCAAGAAAC
1 CATCCCAAGACCC
**
142769 CATCCCAAGATAC
1 CATCCCAAGACCC
* **
142782 CATCCCATGATTC
1 CATCCCAAGACCC
*
142795 CATCCCAAGATCC
1 CATCCCAAGACCC
*
142808 CATCCCCAGACCC
1 CATCCCAAGACCC
142821 CATCC
1 CATCC
142826 TCACATAGCT
Statistics
Matches: 50, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
13 50 1.00
ACGTcount: A:0.31, C:0.46, G:0.07, T:0.16
Consensus pattern (13 bp):
CATCCCAAGACCC
Left flanking sequence: Indices 142256 -- 142755
TCGGGAATCCGCGGGATCTCGTCGCTCATGGTTGTGGTGCTAGCACCTCGCGGTGATATTTCGCA
CTGGTGGCGAACCGCACGCAGGAGCAAGAGGGGTGGAAGGCGGTGAGTGGAAGGAGGTGGGTGAA
GGAAAAATGAGGAAGAAAGGAGGGGGAGGGGAGGATGGAAGAGGACAGAGGAGGTAGTAGAGGAC
ATCGAGGAGGTAGTAGAGGACATAGAGAAGGATAAGAGGACGTACAGATAAATCGTAGAGACAGG
TGAGAGACCGCTTGGGAGCTAGACAATATACTTGGCTGTGACATAACACAGGAATTGCTTAGTGG
GGTGTGTTGGCAGCGGACATTGAGTGTAGTGTGATCTACAAAAACTGCGGAATCGCAGTCTTCCT
TACCATTCTCGGGTCGATGCCATCTGCGTTGGTTCCCACCTTCTTCTTCGCCCCATACTTTTAAA
CACTGGTTCACAACACCTATACTAACAACACCTCTACTAACAACA
Right flanking sequence: Indices 142826 -- 143325
TCACATAGCTCTTACACCACTCTCCTACCCATTAGTATCCATTCTCTATCCTAGTACAACCCGAG
CTTATAATCATCAGCGTCAAAGTACCCGCACAACACGGTGCGGTCGTTATACTGCCGCCCGGCCA
CCTTGTTGATCACCTCGAAGGCCAGTTCGGGCGAGTCAAACTCGACAAAAACCTTGCCCAACCCG
CGCGGCAGGTCGTCGGCAAGCCCCATCACGTACCCCTGCGGCGGCCGGGGAATCACCATCGACAC
CACCGGGGCGATTTTCGCCAACTCGTGGCGGAAGTCCGCCACCACAAACTCGTAGTTGTCGTCGT
CCACCAAGTCGGCCCCGGTGACGCAGTTGACAAACTGCACCACCAGCAGCTTGCGGTGCTCGCTG
ATCCCCTGGCGGTGCACCAACTTGGGCAACAGCTCGCCGGTGGCCGCCACCGTCTGCACCGCGCC
CATACACCCGTAGTAGGCGCGGGTCACCAGCGGAAGCGCCAGGGT
Found at i:142823 original size:26 final size:26
Alignment explanation
Indices: 142768--142825 Score: 73
Period size: 26 Copynumber: 2.2 Consensus size: 26
142758 TCCCAAGAAA
**
142768 CCATCCCAAGATACCATCCCATGATT
1 CCATCCCAAGATACCATCCCATGACC
*
142794 CCATCCCAAGATCCCATCCCCA-GACC
1 CCATCCCAAGATACCAT-CCCATGACC
142820 CCATCC
1 CCATCC
142826 TCACATAGCT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
26 24 0.86
27 4 0.14
ACGTcount: A:0.28, C:0.48, G:0.07, T:0.17
Consensus pattern (26 bp):
CCATCCCAAGATACCATCCCATGACC
Left flanking sequence: Indices 142268 -- 142767
GGGATCTCGTCGCTCATGGTTGTGGTGCTAGCACCTCGCGGTGATATTTCGCACTGGTGGCGAAC
CGCACGCAGGAGCAAGAGGGGTGGAAGGCGGTGAGTGGAAGGAGGTGGGTGAAGGAAAAATGAGG
AAGAAAGGAGGGGGAGGGGAGGATGGAAGAGGACAGAGGAGGTAGTAGAGGACATCGAGGAGGTA
GTAGAGGACATAGAGAAGGATAAGAGGACGTACAGATAAATCGTAGAGACAGGTGAGAGACCGCT
TGGGAGCTAGACAATATACTTGGCTGTGACATAACACAGGAATTGCTTAGTGGGGTGTGTTGGCA
GCGGACATTGAGTGTAGTGTGATCTACAAAAACTGCGGAATCGCAGTCTTCCTTACCATTCTCGG
GTCGATGCCATCTGCGTTGGTTCCCACCTTCTTCTTCGCCCCATACTTTTAAACACTGGTTCACA
ACACCTATACTAACAACACCTCTACTAACAACACATCCCAAGAAA
Right flanking sequence: Indices 142826 -- 143325
TCACATAGCTCTTACACCACTCTCCTACCCATTAGTATCCATTCTCTATCCTAGTACAACCCGAG
CTTATAATCATCAGCGTCAAAGTACCCGCACAACACGGTGCGGTCGTTATACTGCCGCCCGGCCA
CCTTGTTGATCACCTCGAAGGCCAGTTCGGGCGAGTCAAACTCGACAAAAACCTTGCCCAACCCG
CGCGGCAGGTCGTCGGCAAGCCCCATCACGTACCCCTGCGGCGGCCGGGGAATCACCATCGACAC
CACCGGGGCGATTTTCGCCAACTCGTGGCGGAAGTCCGCCACCACAAACTCGTAGTTGTCGTCGT
CCACCAAGTCGGCCCCGGTGACGCAGTTGACAAACTGCACCACCAGCAGCTTGCGGTGCTCGCTG
ATCCCCTGGCGGTGCACCAACTTGGGCAACAGCTCGCCGGTGGCCGCCACCGTCTGCACCGCGCC
CATACACCCGTAGTAGGCGCGGGTCACCAGCGGAAGCGCCAGGGT
Found at i:144130 original size:9 final size:9
Alignment explanation
Indices: 144116--144149 Score: 50
Period size: 9 Copynumber: 3.8 Consensus size: 9
144106 GGCGCTGGGG
144116 CGGTCGCCA
1 CGGTCGCCA
**
144125 CGGTCGCTG
1 CGGTCGCCA
144134 CGGTCGCCA
1 CGGTCGCCA
144143 CGGTCGC
1 CGGTCGC
144150 GGGACGGGCG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.06, C:0.41, G:0.38, T:0.15
Consensus pattern (9 bp):
CGGTCGCCA
Left flanking sequence: Indices 143616 -- 144115
GTTTGTACAAGTTGTAGGGGAGGGTGATCCCGTTGAGGGTGAGGGCGATGGTGGCACACACCGCG
TTGGCGGTGTGGCACACGAGGCGGCCCTGGGTCGGCTGCTTGGCGGTGATCAGCTGCGCCAGCGT
CTGGGGCACGTCGATGCTTTTGAGGTAGTCGTTGACAAAGTCGCCGATCCGGTCGAGATTGACCA
GGCCCAGCGCGGTTCCCTGGCCAACCACCACGTCCACCACGAGGGTTTTCGCCGCCACCGAGTCG
ATGGGGTCGATGTGCGACTTGTTGAGGAGCTGGGGCGCGGTGGACATCGTGTCGGGCCCGGCCGC
CGTCCCTGGAGGCGGGAAGTGGCCCAGCATTTTCGCGGTGACCGCAGGCACGTTCTCGAACCCGG
GCGCGCGCTGGCCCCACCGGGTGGTGGCGGGCTGGAGCTGCTCGAGCGACGGCACGTCTGCGAGC
TTGGCGAGGTCGGCCTCGGGATCGCGCAGCCGCTGGGCGCTGGGG
Right flanking sequence: Indices 144150 -- 144649
GGGACGGGCGGGAGTCGAAGCGGTCTCGCCCGCGGTCGCGTCCTCCGCGGCCTCTGTCGCTGCGG
TAGCGCAGGTCCCGCGGGTCGCTGTCGCGGTAGCGGTCCTGGCCGTAGCGCGGGCCACGCGCGCG
ATCGCGGCTGTAGCGGTCGTTCTGGGGGTAGCGGTCGCTTTGGGGGTAGCGGTCGCTTTGGGAAT
AGCGGTCGTTTTGGGGATAGCGGTCGTTTTGGGCGTAGCGGTCGCGGTCGTTTGGACGATCGGGA
CGGTCGCTCGGACGGTCGTTTGAGCGGTCGTTGTAGCGATCGCTCTGGGAATAGCGGTCGTTCAG
AGGGTAGCGGTCACCCTGGGGGTACCGGTCGTGCTGGGAGTAGCGGTCGTTGGCGCCACTCCGCT
CGTTTCTGTCGCCCTGGGGAACTCGGTCGTTTTGGTACGCCTGGGCCGGAGGCTGGCCAAACGTT
GACTCGGGCGGCTGGCCAAACTGGTACGGCGCCAGCGACGCCGGA
Found at i:144138 original size:18 final size:18
Alignment explanation
Indices: 144115--144149 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
144105 GGGCGCTGGG
144115 GCGGTCGCCACGGTCGCT
1 GCGGTCGCCACGGTCGCT
144133 GCGGTCGCCACGGTCGC
1 GCGGTCGCCACGGTCGC
144150 GGGACGGGCG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.06, C:0.40, G:0.40, T:0.14
Consensus pattern (18 bp):
GCGGTCGCCACGGTCGCT
Left flanking sequence: Indices 143615 -- 144114
CGTTTGTACAAGTTGTAGGGGAGGGTGATCCCGTTGAGGGTGAGGGCGATGGTGGCACACACCGC
GTTGGCGGTGTGGCACACGAGGCGGCCCTGGGTCGGCTGCTTGGCGGTGATCAGCTGCGCCAGCG
TCTGGGGCACGTCGATGCTTTTGAGGTAGTCGTTGACAAAGTCGCCGATCCGGTCGAGATTGACC
AGGCCCAGCGCGGTTCCCTGGCCAACCACCACGTCCACCACGAGGGTTTTCGCCGCCACCGAGTC
GATGGGGTCGATGTGCGACTTGTTGAGGAGCTGGGGCGCGGTGGACATCGTGTCGGGCCCGGCCG
CCGTCCCTGGAGGCGGGAAGTGGCCCAGCATTTTCGCGGTGACCGCAGGCACGTTCTCGAACCCG
GGCGCGCGCTGGCCCCACCGGGTGGTGGCGGGCTGGAGCTGCTCGAGCGACGGCACGTCTGCGAG
CTTGGCGAGGTCGGCCTCGGGATCGCGCAGCCGCTGGGCGCTGGG
Right flanking sequence: Indices 144150 -- 144649
GGGACGGGCGGGAGTCGAAGCGGTCTCGCCCGCGGTCGCGTCCTCCGCGGCCTCTGTCGCTGCGG
TAGCGCAGGTCCCGCGGGTCGCTGTCGCGGTAGCGGTCCTGGCCGTAGCGCGGGCCACGCGCGCG
ATCGCGGCTGTAGCGGTCGTTCTGGGGGTAGCGGTCGCTTTGGGGGTAGCGGTCGCTTTGGGAAT
AGCGGTCGTTTTGGGGATAGCGGTCGTTTTGGGCGTAGCGGTCGCGGTCGTTTGGACGATCGGGA
CGGTCGCTCGGACGGTCGTTTGAGCGGTCGTTGTAGCGATCGCTCTGGGAATAGCGGTCGTTCAG
AGGGTAGCGGTCACCCTGGGGGTACCGGTCGTGCTGGGAGTAGCGGTCGTTGGCGCCACTCCGCT
CGTTTCTGTCGCCCTGGGGAACTCGGTCGTTTTGGTACGCCTGGGCCGGAGGCTGGCCAAACGTT
GACTCGGGCGGCTGGCCAAACTGGTACGGCGCCAGCGACGCCGGA
Found at i:144312 original size:18 final size:17
Alignment explanation
Indices: 144289--144388 Score: 119
Period size: 18 Copynumber: 5.6 Consensus size: 17
144279 GATCGCGGCT
144289 GTAGCGGTCGTTCTGGGG
1 GTAGCGGTCGTT-TGGGG
144307 GTAGCGGTCGCTTTGGGG
1 GTAGCGGTCG-TTTGGGG
*
144325 GTAGCGGTCGCTTTGGGA
1 GTAGCGGTCG-TTTGGGG
*
144343 ATAGCGGTCGTTTTGGGG
1 GTAGCGGTCG-TTTGGGG
* *
144361 ATAGCGGTCGTTTTGGGC
1 GTAGCGGTCG-TTTGGGG
144379 GTAGCGGTCG
1 GTAGCGGTCG
144389 CGGTCGTTTG
Statistics
Matches: 75, Mismatches: 6, Indels: 2
0.90 0.07 0.02
Matches are distributed among these distances:
18 73 0.97
19 2 0.03
ACGTcount: A:0.09, C:0.16, G:0.46, T:0.29
Consensus pattern (17 bp):
GTAGCGGTCGTTTGGGG
Left flanking sequence: Indices 143789 -- 144288
CCGATCCGGTCGAGATTGACCAGGCCCAGCGCGGTTCCCTGGCCAACCACCACGTCCACCACGAG
GGTTTTCGCCGCCACCGAGTCGATGGGGTCGATGTGCGACTTGTTGAGGAGCTGGGGCGCGGTGG
ACATCGTGTCGGGCCCGGCCGCCGTCCCTGGAGGCGGGAAGTGGCCCAGCATTTTCGCGGTGACC
GCAGGCACGTTCTCGAACCCGGGCGCGCGCTGGCCCCACCGGGTGGTGGCGGGCTGGAGCTGCTC
GAGCGACGGCACGTCTGCGAGCTTGGCGAGGTCGGCCTCGGGATCGCGCAGCCGCTGGGCGCTGG
GGCGGTCGCCACGGTCGCTGCGGTCGCCACGGTCGCGGGACGGGCGGGAGTCGAAGCGGTCTCGC
CCGCGGTCGCGTCCTCCGCGGCCTCTGTCGCTGCGGTAGCGCAGGTCCCGCGGGTCGCTGTCGCG
GTAGCGGTCCTGGCCGTAGCGCGGGCCACGCGCGCGATCGCGGCT
Right flanking sequence: Indices 144389 -- 144888
CGGTCGTTTGGACGATCGGGACGGTCGCTCGGACGGTCGTTTGAGCGGTCGTTGTAGCGATCGCT
CTGGGAATAGCGGTCGTTCAGAGGGTAGCGGTCACCCTGGGGGTACCGGTCGTGCTGGGAGTAGC
GGTCGTTGGCGCCACTCCGCTCGTTTCTGTCGCCCTGGGGAACTCGGTCGTTTTGGTACGCCTGG
GCCGGAGGCTGGCCAAACGTTGACTCGGGCGGCTGGCCAAACTGGTACGGCGCCAGCGACGCCGG
AGGCTGGCCAAACTGCAGGCCCTGGCCCCCGTAGCCCGGTCCTTGAGGCGGCACCAGGCTGAATC
CTCCGAACCCGGCCATTGGGCTCGCGCCGTTGGCAGAAGCGGACGCCAGTGGCGGGCCGCGCGAG
GCGTATCTGTCGTCGCCGTACGCCAGAGACCGCAGCTTGACGTCGCGGTCCCGCGAGCGGTTGCT
GGTGTATCCCCCGCGATGGTCCATGGTGGATGCGATGAAGATGCG
Found at i:144511 original size:18 final size:18
Alignment explanation
Indices: 144490--144524 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
144480 AGCGGTCACC
*
144490 CTGGGGGTACCGGTCGTG
1 CTGGGAGTACCGGTCGTG
*
144508 CTGGGAGTAGCGGTCGT
1 CTGGGAGTACCGGTCGT
144525 TGGCGCCACT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.09, C:0.20, G:0.49, T:0.23
Consensus pattern (18 bp):
CTGGGAGTACCGGTCGTG
Left flanking sequence: Indices 143990 -- 144489
ACGTTCTCGAACCCGGGCGCGCGCTGGCCCCACCGGGTGGTGGCGGGCTGGAGCTGCTCGAGCGA
CGGCACGTCTGCGAGCTTGGCGAGGTCGGCCTCGGGATCGCGCAGCCGCTGGGCGCTGGGGCGGT
CGCCACGGTCGCTGCGGTCGCCACGGTCGCGGGACGGGCGGGAGTCGAAGCGGTCTCGCCCGCGG
TCGCGTCCTCCGCGGCCTCTGTCGCTGCGGTAGCGCAGGTCCCGCGGGTCGCTGTCGCGGTAGCG
GTCCTGGCCGTAGCGCGGGCCACGCGCGCGATCGCGGCTGTAGCGGTCGTTCTGGGGGTAGCGGT
CGCTTTGGGGGTAGCGGTCGCTTTGGGAATAGCGGTCGTTTTGGGGATAGCGGTCGTTTTGGGCG
TAGCGGTCGCGGTCGTTTGGACGATCGGGACGGTCGCTCGGACGGTCGTTTGAGCGGTCGTTGTA
GCGATCGCTCTGGGAATAGCGGTCGTTCAGAGGGTAGCGGTCACC
Right flanking sequence: Indices 144525 -- 145024
TGGCGCCACTCCGCTCGTTTCTGTCGCCCTGGGGAACTCGGTCGTTTTGGTACGCCTGGGCCGGA
GGCTGGCCAAACGTTGACTCGGGCGGCTGGCCAAACTGGTACGGCGCCAGCGACGCCGGAGGCTG
GCCAAACTGCAGGCCCTGGCCCCCGTAGCCCGGTCCTTGAGGCGGCACCAGGCTGAATCCTCCGA
ACCCGGCCATTGGGCTCGCGCCGTTGGCAGAAGCGGACGCCAGTGGCGGGCCGCGCGAGGCGTAT
CTGTCGTCGCCGTACGCCAGAGACCGCAGCTTGACGTCGCGGTCCCGCGAGCGGTTGCTGGTGTA
TCCCCCGCGATGGTCCATGGTGGATGCGATGAAGATGCGGCGCGAAAAAGGTGGTGGTAGGTGGG
GTGAATGAAAGGAGGAGAAGGTGAAAGCAGGTGGGGAGAAGATACGAAGATGGTCGGGTTGAGCG
TGGTTGTGGATGGTTTAGTGATGGTTGGGTTTCAGCCCAGAGACT
Found at i:145344 original size:2 final size:2
Alignment explanation
Indices: 145339--145368 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
145329 CACACACACA
*
145339 CT CT CT CT CT CT CT CT CT CT CT AT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
145369 TTCGAACTGA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.03, C:0.47, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Left flanking sequence: Indices 144839 -- 145338
TTGCTGGTGTATCCCCCGCGATGGTCCATGGTGGATGCGATGAAGATGCGGCGCGAAAAAGGTGG
TGGTAGGTGGGGTGAATGAAAGGAGGAGAAGGTGAAAGCAGGTGGGGAGAAGATACGAAGATGGT
CGGGTTGAGCGTGGTTGTGGATGGTTTAGTGATGGTTGGGTTTCAGCCCAGAGACTGTTGTTGTG
CTATGTCTCACTGCTGAGTGTGATGGATAGTTTCACAGTGATAAAGATGGAAGAGTAATACCACG
CGTTTAGTGGATTCACAGAACAGATGATCAAAATTTCGACGGTCCCAGGGTGCTATCACTACCGT
TCAGGGTGCTACTGATCGAGATACTGAGGTTTTTCGACCTTATCCTCACTAAACTCCTGTGGTCC
CTGCAGTGTATACAGTGGATGTAAACAGTGAGATAAACAGTGCGATCCCAAGAGGCCACTGGAAA
AGGACCCAAAATAACCATAACTACACATACACACACACACACACA
Right flanking sequence: Indices 145369 -- 145868
TTCGAACTGAACCAACCTTGTGACAATTAAGTCACCGCAGTCCCTAGCCCCCTAGCCCCATAACT
AAACCTCGTAGCAGACGTCCTCTTTAGCTTTATTACTCTATTTGCTTTTGTCTACAACTCGTCGT
GCTCGACCTCGTCCTCAGCCTTCTCCTTCTTCGCCTTCTTGTCCTTCTTGCCCTTCTTGCTCTTG
CGCTTCGGCTTCGGGGTCGCGGTGGGCGTGGCGGTGGTGTCCTCCACCGGCTCCTCCACCGGCTC
CTCCACGGGCTCGGCGTCCGCGTCGTCGGCCTCCTCCTCCTCGGCCTTCTTGGCCGCCTTCTTGG
CCGCCTTCTCCGCACGCTTCTTCTCCTGGGCGCGTTTGCGCTTGATCAACGCCTTCAACTTGTCC
TCGTACCCCGCCACCTGCTCCTTGACCGTCACCTCCAACGTCATGAGGTCGTTCAACACCCCCAT
CATGTGCTGGGCAATCTTGTTGTGGTACTTCCAGATGTCGTGCTT
Found at i:145545 original size:18 final size:18
Alignment explanation
Indices: 145522--145557 Score: 56
Period size: 18 Copynumber: 2.0 Consensus size: 18
145512 CTCAGCCTTC
145522 TCCTTCTT-CGCCTTCTTG
1 TCCTTCTTGC-CCTTCTTG
145540 TCCTTCTTGCCCTTCTTG
1 TCCTTCTTGCCCTTCTTG
145558 CTCTTGCGCT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 16 0.94
19 1 0.06
ACGTcount: A:0.00, C:0.39, G:0.11, T:0.50
Consensus pattern (18 bp):
TCCTTCTTGCCCTTCTTG
Left flanking sequence: Indices 145022 -- 145521
ACTGTTGTTGTGCTATGTCTCACTGCTGAGTGTGATGGATAGTTTCACAGTGATAAAGATGGAAG
AGTAATACCACGCGTTTAGTGGATTCACAGAACAGATGATCAAAATTTCGACGGTCCCAGGGTGC
TATCACTACCGTTCAGGGTGCTACTGATCGAGATACTGAGGTTTTTCGACCTTATCCTCACTAAA
CTCCTGTGGTCCCTGCAGTGTATACAGTGGATGTAAACAGTGAGATAAACAGTGCGATCCCAAGA
GGCCACTGGAAAAGGACCCAAAATAACCATAACTACACATACACACACACACACACACTCTCTCT
CTCTCTCTCTCTCTATCTCTCTTTCGAACTGAACCAACCTTGTGACAATTAAGTCACCGCAGTCC
CTAGCCCCCTAGCCCCATAACTAAACCTCGTAGCAGACGTCCTCTTTAGCTTTATTACTCTATTT
GCTTTTGTCTACAACTCGTCGTGCTCGACCTCGTCCTCAGCCTTC
Right flanking sequence: Indices 145558 -- 146057
CTCTTGCGCTTCGGCTTCGGGGTCGCGGTGGGCGTGGCGGTGGTGTCCTCCACCGGCTCCTCCAC
CGGCTCCTCCACGGGCTCGGCGTCCGCGTCGTCGGCCTCCTCCTCCTCGGCCTTCTTGGCCGCCT
TCTTGGCCGCCTTCTCCGCACGCTTCTTCTCCTGGGCGCGTTTGCGCTTGATCAACGCCTTCAAC
TTGTCCTCGTACCCCGCCACCTGCTCCTTGACCGTCACCTCCAACGTCATGAGGTCGTTCAACAC
CCCCATCATGTGCTGGGCAATCTTGTTGTGGTACTTCCAGATGTCGTGCTTCTTTTTGTCGGCAA
ACTCGTCCTCGGTCAACAGCTCCAACAACTCGCGCAACGCCTCCAAGTCCACGTTGAACTCCTCG
ATCACCGTGCGCACCGCCTTCAACACGTCGCGCTGGTTGCCGCCCTGGAGCAGCGCCAACACCTT
GGCCTTTTCGCGCTCCCAGTCAAACCCCTGCGCCTCGTACTGCTG
Found at i:145618 original size:12 final size:12
Alignment explanation
Indices: 145603--145640 Score: 67
Period size: 12 Copynumber: 3.2 Consensus size: 12
145593 GGCGGTGGTG
145603 TCCTCCACCGGC
1 TCCTCCACCGGC
145615 TCCTCCACCGGC
1 TCCTCCACCGGC
*
145627 TCCTCCACGGGC
1 TCCTCCACCGGC
145639 TC
1 TC
145641 GGCGTCCGCG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 25 1.00
ACGTcount: A:0.08, C:0.55, G:0.18, T:0.18
Consensus pattern (12 bp):
TCCTCCACCGGC
Left flanking sequence: Indices 145103 -- 145602
TAGTGGATTCACAGAACAGATGATCAAAATTTCGACGGTCCCAGGGTGCTATCACTACCGTTCAG
GGTGCTACTGATCGAGATACTGAGGTTTTTCGACCTTATCCTCACTAAACTCCTGTGGTCCCTGC
AGTGTATACAGTGGATGTAAACAGTGAGATAAACAGTGCGATCCCAAGAGGCCACTGGAAAAGGA
CCCAAAATAACCATAACTACACATACACACACACACACACACTCTCTCTCTCTCTCTCTCTCTAT
CTCTCTTTCGAACTGAACCAACCTTGTGACAATTAAGTCACCGCAGTCCCTAGCCCCCTAGCCCC
ATAACTAAACCTCGTAGCAGACGTCCTCTTTAGCTTTATTACTCTATTTGCTTTTGTCTACAACT
CGTCGTGCTCGACCTCGTCCTCAGCCTTCTCCTTCTTCGCCTTCTTGTCCTTCTTGCCCTTCTTG
CTCTTGCGCTTCGGCTTCGGGGTCGCGGTGGGCGTGGCGGTGGTG
Right flanking sequence: Indices 145641 -- 146140
GGCGTCCGCGTCGTCGGCCTCCTCCTCCTCGGCCTTCTTGGCCGCCTTCTTGGCCGCCTTCTCCG
CACGCTTCTTCTCCTGGGCGCGTTTGCGCTTGATCAACGCCTTCAACTTGTCCTCGTACCCCGCC
ACCTGCTCCTTGACCGTCACCTCCAACGTCATGAGGTCGTTCAACACCCCCATCATGTGCTGGGC
AATCTTGTTGTGGTACTTCCAGATGTCGTGCTTCTTTTTGTCGGCAAACTCGTCCTCGGTCAACA
GCTCCAACAACTCGCGCAACGCCTCCAAGTCCACGTTGAACTCCTCGATCACCGTGCGCACCGCC
TTCAACACGTCGCGCTGGTTGCCGCCCTGGAGCAGCGCCAACACCTTGGCCTTTTCGCGCTCCCA
GTCAAACCCCTGCGCCTCGTACTGCTGGCGGTAGGCGTCCAACAGGTCGTCCAAGTCGTTCAACC
GGCCCGAGAGCTTGTCGTAGATGTGCGACCCGTCCTTGAGCATCT
Done.