Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: scaffold34
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 206885
ACGTcount: A:0.23, C:0.26, G:0.27, T:0.23
Warning! 1 characters in sequence are not A, C, G, or T
Found at i:1141 original size:39 final size:39
Alignment explanation
Indices: 1099--2205 Score: 450
Period size: 39 Copynumber: 28.2 Consensus size: 39
1089 AGATGGTTGA
* *
1099 GGCACTGCACCACCAAACCCGTCGGACTGTGAAGGATCA
1 GGCACTGCACCACCAAACCCGTCGGACTGTGAAGGCTCT
* * * ** * **
1138 GGCACTGCACCGCCAAACCC-TCTAGTCTCAGATGGCTGA
1 GGCACTGCACCACCAAACCCGTC-GGACTGTGAAGGCTCT
* * *
1177 GGCACTGCACCACCAAATCCGCCGG-CATGGGAAGGCTCT
1 GGCACTGCACCACCAAACCCGTCGGAC-TGTGAAGGCTCT
* * *
1216 GGCACCGCTCCACCAAACCCGTCGGATTGTGAAGGCTCT
1 GGCACTGCACCACCAAACCCGTCGGACTGTGAAGGCTCT
1255 GGCACTGCACCACCAAACCCGTCGGACTGTGAAGGCTCT
1 GGCACTGCACCACCAAACCCGTCGGACTGTGAAGGCTCT
* * * *
1294 GGCACAGCTCCACCAAACCCGTTGGATTGTGAAGGCTCT
1 GGCACTGCACCACCAAACCCGTCGGACTGTGAAGGCTCT
* * *
1333 GGCACTGCACTACCAAATCCGTCGGACTGTGAAGGCTCG
1 GGCACTGCACCACCAAACCCGTCGGACTGTGAAGGCTCT
* * * ** * *
1372 GGCAAC-GCTCCACCGAACACCC--CAGTCTCAGATGGCTCA
1 GGC-ACTGCACCACC-AA-ACCCGTCGGACTGTGAAGGCTCT
* * * *
1411 GGTACTGCACCACCGAACCCGTCGGATTGTGNGTCTCAGATGGCTCA
1 GGCACTGCACCACCAAACCCGTCGGACTGT--G----A-A-GGCTCT
* * *
1458 GGTACTGCACCACCGAACCCGTCGGATTGTGAAGGCTCT
1 GGCACTGCACCACCAAACCCGTCGGACTGTGAAGGCTCT
* * ** * * *
1497 GGTACAGTTCCACGAGAA-ACGTCGGATTGTGAAGGCTCT
1 GGCACTGCACCACCA-AACCCGTCGGACTGTGAAGGCTCT
* ** * * * * *
1536 GGCACCGGTCCACCAAACAC-TC-CAGTTTCAGATGGCTCT
1 GGCACTGCACCACCAAACCCGTCGGACTGT--GAAGGCTCT
* *
1575 GGCACCGCTCCACCAAACCCGTCGGACTGTGAAGGCTCT
1 GGCACTGCACCACCAAACCCGTCGGACTGTGAAGGCTCT
* ** * * * * *
1614 GGCACCGGTCCACCAAACAC-TC-CAGTTTCAGATGGCTCT
1 GGCACTGCACCACCAAACCCGTCGGACTGT--GAAGGCTCT
* *
1653 GGCACCGCTCCACCAAACCCGTCGGACTGTGAAGGCTCT
1 GGCACTGCACCACCAAACCCGTCGGACTGTGAAGGCTCT
* * * * * * *
1692 GGTACAGCTCCACCAAACTCGTCGGATTGAGAAGGCTCG
1 GGCACTGCACCACCAAACCCGTCGGACTGTGAAGGCTCT
* * * * ** * * *
1731 GGCAAC-GCTCCACCAAACACC-CCAGTCTCAGATGACTCA
1 GGC-ACTGCACCACCAAAC-CCGTCGGACTGTGAAGGCTCT
* * * * *
1770 GGTACTGCACCATCGAACTCGTCCGACTGTGAAGGCTCT
1 GGCACTGCACCACCAAACCCGTCGGACTGTGAAGGCTCT
* * * * * *
1809 GGCACAGCTCCACGAGAA-ACGTCGGATTGTGAAGGCTCG
1 GGCACTGCACCACCA-AACCCGTCGGACTGTGAAGGCTCT
* ***** * * ** * **
1848 GGCACAGGTTTTCCAAACCC-TCCAGTCTCAGATGGCTGG
1 GGCACTGCACCACCAAACCCGT-CGGACTGTGAAGGCTCT
* * * * *
1887 GGCACCGCTCCACCAAACCCGTTGGATTGTGAAGGCTCG
1 GGCACTGCACCACCAAACCCGTCGGACTGTGAAGGCTCT
* ** * * * ** * *
1926 GGCACAGGTCCTCCAAACCC-TCCAGTCTCAGATGGCTCA
1 GGCACTGCACCACCAAACCCGT-CGGACTGTGAAGGCTCT
* * * * ** * **
1965 GGCACCGCTCCACCAAACCC-TCCAGTCTCCGATGGCTGA
1 GGCACTGCACCACCAAACCCGT-CGGACTGTGAAGGCTCT
* *
2004 GGCACCGCTCCACCAAACCCGTCGGACTGTGAAGGCTCT
1 GGCACTGCACCACCAAACCCGTCGGACTGTGAAGGCTCT
* * * * **
2043 GGCACTGCCCCACCAAACCC-TCTAGTCT-TAGATGGCTGA
1 GGCACTGCACCACCAAACCCGTC-GGACTGT-GAAGGCTCT
* * * *
2082 GGCACTGTACCACCAAATCCGTCGGAATGGGAAGGCTCT
1 GGCACTGCACCACCAAACCCGTCGGACTGTGAAGGCTCT
* * * * * * * *
2121 GGTACAGCTCCACTAAACCCGTTGGATTGGGAAGGCTCG
1 GGCACTGCACCACCAAACCCGTCGGACTGTGAAGGCTCT
* * ** * * * *
2160 GGCTCAGGTCCTCCAAACCCGTCTGAATGTGAAGGCTCG
1 GGCACTGCACCACCAAACCCGTCGGACTGTGAAGGCTCT
2199 GGCACTG
1 GGCACTG
2206 TATTATCGAA
Statistics
Matches: 813, Mismatches: 213, Indels: 84
0.73 0.19 0.08
Matches are distributed among these distances:
37 10 0.01
38 22 0.03
39 711 0.87
40 21 0.03
41 11 0.01
45 2 0.00
47 36 0.04
ACGTcount: A:0.23, C:0.34, G:0.26, T:0.18
Consensus pattern (39 bp):
GGCACTGCACCACCAAACCCGTCGGACTGTGAAGGCTCT
Left flanking sequence: Indices 599 -- 1098
AGGATGTGGAGCTGCTCAATGTCTGGGTGCTCAGTTCATTCAGCGAATCTGTTGTTGCGGATATG
TCGGTCCCAGCGCTAGTCTGTCGCCCACTGCTAGATCCATCCAAACTATCATACTCCGAAGACTC
AGGATAGCTCAACGTCAGAGTAGCCAGCGACCCGTGAGAGTCGGTGGTATCAGACAGTTGAGGTT
GGCCTATAGTCAAATCAGAGTTTTTAGAGGACGTTTCGGCGGTGCTAGAAGATTGGGAGTCTGAT
GCATTGAGCAGCTCATCAGATTCGGAGGTGCCACCAGTCATGCCACTGTCTGTCAGCAGAGTTTT
GTCTAATTCTGCATCTTCGAAAGACAGCTCCGTAACGCTAGACAGGTGTAACCTAAGATCACTTG
AATCCAGAGCCAGCAGAGATGACTCTAAGTTGGTGGTGGATGGACTTACCAAACCCGATGAGTCA
AAACTAGGTACCGCTCCATCGAACCCTCCAGTCTCAGATGGTTGA
Right flanking sequence: Indices 2206 -- 2705
TATTATCGAAGCCATGAGATTGGGAAGGCTCTGACAACGCTCCACCAAACCCTTTCAACTCAGCT
GGCTCAGGTACTGCTCCGCCAAACCCTCTAAAACTGCTGCTGGTCTCAAGTAAAGAGCTGTAATG
AGAATTCAGAGTAGGCAATAGAGACTCGGATATAGTTGGAGATATGTCAGTTGAGCTGTCGGTCC
CAGACGAAAGAGGATTAGGTTCAGTAGCACTTGTACCAGACGGATCAATCTGTGCTGACGTCGAA
GACGACAGATATCCGGGAGAGCTGACACTCGGCTCAGGATCGCTAGCCGACATATCCTCTGCGGT
CAGAGAATACGAACCACCAAAAGTTCCCGTCTCACTTGAATCATAGGTAGCAGAGCTCAGAGCGC
TAGAATGGCTGTTTGATCTCTCTGATGTCGATTCATCGGTTCCACTATTCGTAGTCTCTTGAAGG
TGACTAGATGTCAGGGTCATCAATGAACTGTGGGAATCCGAAGTC
Found at i:1307 original size:117 final size:115
Alignment explanation
Indices: 1099--2203 Score: 588
Period size: 117 Copynumber: 9.4 Consensus size: 115
1089 AGATGGTTGA
* * * * *
1099 GGCACTGCACCACCAAACCCGTCGGACTGTGAAGGATCAGGCACTGCACCGCCAAACCCTCTAGT
1 GGCACTGCACCACCAAACCCGTCGGACTGTGAAGGCTCTGGCAC-GCTCCACCAAACCCTC-AGA
* ** * * * *
1164 CTCAGATGGCTGAGGCACTGCACCACCAAATCCGCCGGCA-TGGGAAGGCTCT
64 CTCTGATGGCTCTGGCACCGCTCCACCAAACCCGTCGG-ATTGGGAAGGCTCT
* * * * *
1216 GGCACCGCTCCACCAAACCCGTCGGATTGTGAAGGCTCTGGCACTGCACCACCAAACCCGTCGGA
1 GGCACTGCACCACCAAACCCGTCGGACTGTGAAGGCTCTGGCAC-GCTCCACCAAACCC-TCAGA
* * * * *
1281 CTGTGAAGGCTCTGGCACAGCTCCACCAAACCCGTTGGATTGTGAAGGCTCT
64 CTCTGATGGCTCTGGCACCGCTCCACCAAACCCGTCGGATTGGGAAGGCTCT
* * *
1333 GGCACTGCACTACCAAATCCGTCGGACTGTGAAGGCTCGGGCAACGCTCCACCGAACACCC-CAG
1 GGCACTGCACCACCAAACCCGTCGGACTGTGAAGGCTCTGGC-ACGCTCCACC-AA-ACCCTCAG
* * * * * * * *
1397 TCTCAGATGGCTCAGGTACTGCACCACCGAACCCGTCGGATTGTGNGTCTCAGATGGCTCA
63 ACTCTGATGGCTCTGGCACCGCTCCACCAAACCCGTCGGATTG-G-G----A-A-GGCTCT
* * * * * * * * *
1458 GGTACTGCACCACCGAACCCGTCGGATTGTGAAGGCTCTGGTACAGTTCCACGAGAAACGTCGGA
1 GGCACTGCACCACCAAACCCGTCGGACTGTGAAGGCTCTGGCAC-GCTCCACCA-AACCCTCAGA
* * * * * * * ** *
1523 TTGTGAAGGCTCTGGCACCGGTCCACCAAACAC-TCCAGTTTCAGATGGCTCT
64 CTCTGATGGCTCTGGCACCGCTCCACCAAACCCGT-CGGATTGGGAAGGCTCT
* * * * *
1575 GGCACCGCTCCACCAAACCCGTCGGACTGTGAAGGCTCTGGCACCGGTCCACCAAACACTCCAGT
1 GGCACTGCACCACCAAACCCGTCGGACTGTGAAGGCTCTGGCA-CGCTCCACCAAACCCT-CAGA
* * * *
1640 TTCAGATGGCTCTGGCACCGCTCCACCAAACCCGTCGGACTGTGAAGGCTCT
64 CTCTGATGGCTCTGGCACCGCTCCACCAAACCCGTCGGATTGGGAAGGCTCT
* * * * * * * * *
1692 GGTACAGCTCCACCAAACTCGTCGGATTGAGAAGGCTCGGGCAACGCTCCACCAAACACCCCAGT
1 GGCACTGCACCACCAAACCCGTCGGACTGTGAAGGCTCTGGC-ACGCTCCACCAAAC-CCTCAGA
* * * * * * * * * * * *
1757 CTCAGATGACTCAGGTACTGCACCATCGAACTCGTCCGACTGTGAAGGCTCT
64 CTCTGATGGCTCTGGCACCGCTCCACCAAACCCGTCGGATTGGGAAGGCTCT
* * * * * * * ***
1809 GGCACAGCTCCACGAGAA-ACGTCGGATTGTGAAGGCTCGGGCACAGGTTTTCCAAACCCTCCAG
1 GGCACTGCACCACCA-AACCCGTCGGACTGTGAAGGCTCTGGCAC-GCTCCACCAAACCCT-CAG
* * ** * * *
1873 TCTCAGATGGCTGGGGCACCGCTCCACCAAACCCGTTGGATTGTGAAGGCTCG
63 ACTCTGATGGCTCTGGCACCGCTCCACCAAACCCGTCGGATTGGGAAGGCTCT
* ** * * * ** * *
1926 GGCACAGGTCCTCCAAACCC-TCCAGTCTCAGATGGCTCAGGCACCGCTCCACCAAACCCTCCAG
1 GGCACTGCACCACCAAACCCGT-CGGACTGTGAAGGCTCTGGCA-CGCTCCACCAAACCCT-CAG
* * ** * *
1990 TCTCCGATGGCTGAGGCACCGCTCCACCAAACCCGTCGGACTGTGAAGGCTCT
63 ACTCTGATGGCTCTGGCACCGCTCCACCAAACCCGTCGGATTGGGAAGGCTCT
* * * * ** *
2043 GGCACTGCCCCACCAAACCC-TCTAGTCT-TAGATGGCTGAGGCACTG-TACCACCAAATCCGTC
1 GGCACTGCACCACCAAACCCGTC-GGACTGT-GAAGGCTCTGGCAC-GCT-CCACCAAA-CCCTC
* * ** * * * * * *
2105 GGAATGGGAAGGCTCTGGTACAGCTCCACTAAACCCGTTGGATTGGGAAGGCTCG
61 AGACTCTGATGGCTCTGGCACCGCTCCACCAAACCCGTCGGATTGGGAAGGCTCT
* * ** * * * *
2160 GGCTCAGGTCCTCCAAACCCGTCTGAATGTGAAGGCTCGGGCAC
1 GGCACTGCACCACCAAACCCGTCGGACTGTGAAGGCTCTGGCAC
2204 TGTATTATCG
Statistics
Matches: 766, Mismatches: 187, Indels: 70
0.75 0.18 0.07
Matches are distributed among these distances:
116 14 0.02
117 643 0.84
118 19 0.02
119 6 0.01
123 2 0.00
124 7 0.01
125 75 0.10
ACGTcount: A:0.23, C:0.34, G:0.26, T:0.18
Consensus pattern (115 bp):
GGCACTGCACCACCAAACCCGTCGGACTGTGAAGGCTCTGGCACGCTCCACCAAACCCTCAGACT
CTGATGGCTCTGGCACCGCTCCACCAAACCCGTCGGATTGGGAAGGCTCT
Left flanking sequence: Indices 599 -- 1098
AGGATGTGGAGCTGCTCAATGTCTGGGTGCTCAGTTCATTCAGCGAATCTGTTGTTGCGGATATG
TCGGTCCCAGCGCTAGTCTGTCGCCCACTGCTAGATCCATCCAAACTATCATACTCCGAAGACTC
AGGATAGCTCAACGTCAGAGTAGCCAGCGACCCGTGAGAGTCGGTGGTATCAGACAGTTGAGGTT
GGCCTATAGTCAAATCAGAGTTTTTAGAGGACGTTTCGGCGGTGCTAGAAGATTGGGAGTCTGAT
GCATTGAGCAGCTCATCAGATTCGGAGGTGCCACCAGTCATGCCACTGTCTGTCAGCAGAGTTTT
GTCTAATTCTGCATCTTCGAAAGACAGCTCCGTAACGCTAGACAGGTGTAACCTAAGATCACTTG
AATCCAGAGCCAGCAGAGATGACTCTAAGTTGGTGGTGGATGGACTTACCAAACCCGATGAGTCA
AAACTAGGTACCGCTCCATCGAACCCTCCAGTCTCAGATGGTTGA
Right flanking sequence: Indices 2204 -- 2703
TGTATTATCGAAGCCATGAGATTGGGAAGGCTCTGACAACGCTCCACCAAACCCTTTCAACTCAG
CTGGCTCAGGTACTGCTCCGCCAAACCCTCTAAAACTGCTGCTGGTCTCAAGTAAAGAGCTGTAA
TGAGAATTCAGAGTAGGCAATAGAGACTCGGATATAGTTGGAGATATGTCAGTTGAGCTGTCGGT
CCCAGACGAAAGAGGATTAGGTTCAGTAGCACTTGTACCAGACGGATCAATCTGTGCTGACGTCG
AAGACGACAGATATCCGGGAGAGCTGACACTCGGCTCAGGATCGCTAGCCGACATATCCTCTGCG
GTCAGAGAATACGAACCACCAAAAGTTCCCGTCTCACTTGAATCATAGGTAGCAGAGCTCAGAGC
GCTAGAATGGCTGTTTGATCTCTCTGATGTCGATTCATCGGTTCCACTATTCGTAGTCTCTTGAA
GGTGACTAGATGTCAGGGTCATCAATGAACTGTGGGAATCCGAAG
Found at i:1465 original size:47 final size:46
Alignment explanation
Indices: 1396--1488 Score: 177
Period size: 47 Copynumber: 2.0 Consensus size: 46
1386 GAACACCCCA
1396 GTCTCAGATGGCTCAGGTACTGCACCACCGAACCCGTCGGATTGTG
1 GTCTCAGATGGCTCAGGTACTGCACCACCGAACCCGTCGGATTGTG
1442 NGTCTCAGATGGCTCAGGTACTGCACCACCGAACCCGTCGGATTGTG
1 -GTCTCAGATGGCTCAGGTACTGCACCACCGAACCCGTCGGATTGTG
1489 AAGGCTCTGG
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
47 46 1.00
ACGTcount: A:0.19, C:0.30, G:0.28, T:0.22
Consensus pattern (46 bp):
GTCTCAGATGGCTCAGGTACTGCACCACCGAACCCGTCGGATTGTG
Left flanking sequence: Indices 896 -- 1395
TCATGCCACTGTCTGTCAGCAGAGTTTTGTCTAATTCTGCATCTTCGAAAGACAGCTCCGTAACG
CTAGACAGGTGTAACCTAAGATCACTTGAATCCAGAGCCAGCAGAGATGACTCTAAGTTGGTGGT
GGATGGACTTACCAAACCCGATGAGTCAAAACTAGGTACCGCTCCATCGAACCCTCCAGTCTCAG
ATGGTTGAGGCACTGCACCACCAAACCCGTCGGACTGTGAAGGATCAGGCACTGCACCGCCAAAC
CCTCTAGTCTCAGATGGCTGAGGCACTGCACCACCAAATCCGCCGGCATGGGAAGGCTCTGGCAC
CGCTCCACCAAACCCGTCGGATTGTGAAGGCTCTGGCACTGCACCACCAAACCCGTCGGACTGTG
AAGGCTCTGGCACAGCTCCACCAAACCCGTTGGATTGTGAAGGCTCTGGCACTGCACTACCAAAT
CCGTCGGACTGTGAAGGCTCGGGCAACGCTCCACCGAACACCCCA
Right flanking sequence: Indices 1489 -- 1988
AAGGCTCTGGTACAGTTCCACGAGAAACGTCGGATTGTGAAGGCTCTGGCACCGGTCCACCAAAC
ACTCCAGTTTCAGATGGCTCTGGCACCGCTCCACCAAACCCGTCGGACTGTGAAGGCTCTGGCAC
CGGTCCACCAAACACTCCAGTTTCAGATGGCTCTGGCACCGCTCCACCAAACCCGTCGGACTGTG
AAGGCTCTGGTACAGCTCCACCAAACTCGTCGGATTGAGAAGGCTCGGGCAACGCTCCACCAAAC
ACCCCAGTCTCAGATGACTCAGGTACTGCACCATCGAACTCGTCCGACTGTGAAGGCTCTGGCAC
AGCTCCACGAGAAACGTCGGATTGTGAAGGCTCGGGCACAGGTTTTCCAAACCCTCCAGTCTCAG
ATGGCTGGGGCACCGCTCCACCAAACCCGTTGGATTGTGAAGGCTCGGGCACAGGTCCTCCAAAC
CCTCCAGTCTCAGATGGCTCAGGCACCGCTCCACCAAACCCTCCA
Found at i:1550 original size:242 final size:241
Alignment explanation
Indices: 1099--1750 Score: 615
Period size: 242 Copynumber: 2.8 Consensus size: 241
1089 AGATGGTTGA
* * * * * *
1099 GGCACTGCACCACCAAACCCGTCGGACTGTGAAGGATCAGGC-ACTGCACCGCCAAAC-CCTCTA
1 GGCACCGCACCACCAAACCCGTCGGACTGTGAAGGCTCGGGCAAC-GCTCCACCAAACACC-CCA
* * * * * *
1162 GTCTCAGATGGCTGAGGCACTGCACCACCAAATCCGCCGG-CATG-GG----A-A-GGCTCTGGC
64 GTCTCAGATGGCTCAGGCACCGCACCACCAAACCCGTCGGAC-TGTGGTCTCAGATGGCTCAGGT
* * * *
1219 ACCGCTCCACCAAACCCGTCGGATTGTGAAGGCTCTGGCACTGCACCACCAAACCCGTCGGACTG
128 ACTGCACCACCAAACCCGTCGGATTGTGAAGGCTCTGGCACAGCACCACCAAACACGTCGGACTG
* ** **
1284 TGAAGGCTCTGGCACAGCTCCACCAAACCCGT-TGGATTGTGAAGGCTCT
193 TGAAGGCTCTGGCACAGCTCCACCAAACAC-TCCAGATTCAGAAGGCTCT
* * * *
1333 GGCACTGCACTACCAAATCCGTCGGACTGTGAAGGCTCGGGCAACGCTCCACCGAACACCCCAGT
1 GGCACCGCACCACCAAACCCGTCGGACTGTGAAGGCTCGGGCAACGCTCCACCAAACACCCCAGT
* * * *
1398 CTCAGATGGCTCAGGTACTGCACCACCGAACCCGTCGGATTGTGNGTCTCAGATGGCTCAGGTAC
66 CTCAGATGGCTCAGGCACCGCACCACCAAACCCGTCGGACTGTG-GTCTCAGATGGCTCAGGTAC
* * ** * *
1463 TGCACCACCGAACCCGTCGGATTGTGAAGGCTCTGGTACAGTTCCACGAGAA-ACGTCGGATTGT
130 TGCACCACCAAACCCGTCGGATTGTGAAGGCTCTGGCACAGCACCACCA-AACACGTCGGACTGT
* * * *
1527 GAAGGCTCTGGCACCGGTCCACCAAACACTCCAGTTTCAGATGGCTCT
194 GAAGGCTCTGGCACAGCTCCACCAAACACTCCAGATTCAGAAGGCTCT
* * * * *
1575 GGCACCGCTCCACCAAACCCGTCGGACTGTGAAGGCTCTGGCACCGGTCCACCAAACACTCCAGT
1 GGCACCGCACCACCAAACCCGTCGGACTGTGAAGGCTCGGGCAACGCTCCACCAAACACCCCAGT
* * * * *
1640 TTCAGATGGCTCTGGCACCGCTCCACCAAACCCGTCGGACTGT-G----A-A-GGCTCTGGTACA
66 CTCAGATGGCTCAGGCACCGCACCACCAAACCCGTCGGACTGTGGTCTCAGATGGCTCAGGTACT
* * * * *
1698 GCTCCACCAAACTCGTCGGATTGAGAAGGCTCGGGCA-ACGCTCCACCAAACAC
131 GCACCACCAAACCCGTCGGATTGTGAAGGCTCTGGCACA-GCACCACCAAACAC
1751 CCCAGTCTCA
Statistics
Matches: 342, Mismatches: 61, Indels: 30
0.79 0.14 0.07
Matches are distributed among these distances:
233 3 0.01
234 136 0.40
235 6 0.02
236 2 0.01
240 2 0.01
241 2 0.01
242 189 0.55
243 2 0.01
ACGTcount: A:0.23, C:0.34, G:0.25, T:0.17
Consensus pattern (241 bp):
GGCACCGCACCACCAAACCCGTCGGACTGTGAAGGCTCGGGCAACGCTCCACCAAACACCCCAGT
CTCAGATGGCTCAGGCACCGCACCACCAAACCCGTCGGACTGTGGTCTCAGATGGCTCAGGTACT
GCACCACCAAACCCGTCGGATTGTGAAGGCTCTGGCACAGCACCACCAAACACGTCGGACTGTGA
AGGCTCTGGCACAGCTCCACCAAACACTCCAGATTCAGAAGGCTCT
Left flanking sequence: Indices 599 -- 1098
AGGATGTGGAGCTGCTCAATGTCTGGGTGCTCAGTTCATTCAGCGAATCTGTTGTTGCGGATATG
TCGGTCCCAGCGCTAGTCTGTCGCCCACTGCTAGATCCATCCAAACTATCATACTCCGAAGACTC
AGGATAGCTCAACGTCAGAGTAGCCAGCGACCCGTGAGAGTCGGTGGTATCAGACAGTTGAGGTT
GGCCTATAGTCAAATCAGAGTTTTTAGAGGACGTTTCGGCGGTGCTAGAAGATTGGGAGTCTGAT
GCATTGAGCAGCTCATCAGATTCGGAGGTGCCACCAGTCATGCCACTGTCTGTCAGCAGAGTTTT
GTCTAATTCTGCATCTTCGAAAGACAGCTCCGTAACGCTAGACAGGTGTAACCTAAGATCACTTG
AATCCAGAGCCAGCAGAGATGACTCTAAGTTGGTGGTGGATGGACTTACCAAACCCGATGAGTCA
AAACTAGGTACCGCTCCATCGAACCCTCCAGTCTCAGATGGTTGA
Right flanking sequence: Indices 1751 -- 2250
CCCAGTCTCAGATGACTCAGGTACTGCACCATCGAACTCGTCCGACTGTGAAGGCTCTGGCACAG
CTCCACGAGAAACGTCGGATTGTGAAGGCTCGGGCACAGGTTTTCCAAACCCTCCAGTCTCAGAT
GGCTGGGGCACCGCTCCACCAAACCCGTTGGATTGTGAAGGCTCGGGCACAGGTCCTCCAAACCC
TCCAGTCTCAGATGGCTCAGGCACCGCTCCACCAAACCCTCCAGTCTCCGATGGCTGAGGCACCG
CTCCACCAAACCCGTCGGACTGTGAAGGCTCTGGCACTGCCCCACCAAACCCTCTAGTCTTAGAT
GGCTGAGGCACTGTACCACCAAATCCGTCGGAATGGGAAGGCTCTGGTACAGCTCCACTAAACCC
GTTGGATTGGGAAGGCTCGGGCTCAGGTCCTCCAAACCCGTCTGAATGTGAAGGCTCGGGCACTG
TATTATCGAAGCCATGAGATTGGGAAGGCTCTGACAACGCTCCAC
Found at i:4023 original size:81 final size:78
Alignment explanation
Indices: 3891--4046 Score: 231
Period size: 81 Copynumber: 2.0 Consensus size: 78
3881 AGCCAATTGA
* * * **
3891 GATTGACTCGAAGTGGGGGTGGTTGTCCCATTAGAGTCACTATCGTCACCACTCAATTCGCCATT
1 GATTGACCCGAAGTGGGGGTGGTTGACCCACTAGAGTCACTATCGTCACCACTCAATTCGCCACG
3956 GGTGGTAGTCGAG
66 GGTGGTAGTCGAG
*
3969 GATTGACCCGAAGTGGGGGTGGCGGTTGACCCACTAGAGTCACTATCGTCACCACTCAGTTCGCC
1 GATTGACCCGAAGTGGGGGT---GGTTGACCCACTAGAGTCACTATCGTCACCACTCAATTCGCC
4034 ACGGGTGGTAGTC
63 ACGGGTGGTAGTC
4047 AAAGACCTAC
Statistics
Matches: 69, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
78 19 0.28
81 50 0.72
ACGTcount: A:0.20, C:0.24, G:0.31, T:0.25
Consensus pattern (78 bp):
GATTGACCCGAAGTGGGGGTGGTTGACCCACTAGAGTCACTATCGTCACCACTCAATTCGCCACG
GGTGGTAGTCGAG
Left flanking sequence: Indices 3391 -- 3890
CGACAGTGGAGTCCAATGAATCCCATGAATTATCATCAATGGAGGTGACAGACAGTTGAGAGGAA
GCAGAGTTGTTTGAAGCCTGAGATATCGAGCCTTGGGAAGAAGATGTAATGGCTGAAACACTAGT
TTCGGAATGTTGGTCATTGCTCGAGGTTGCCGTCACATGAGACTCGAAGTAATCATCAGGCACAA
TCTCAAAATCGTCGACTAGATCGGGCAAGCTATGGGTGTCCCAAAAGTCGTCGGAGCTGGCAGTT
TTAGACAATTTAGAAATGATGGAAGTCAGATCATGGGAAGTGATAGTTGATTCCGTGATGTCTCC
ATCGGAGGCCAGGTCTGTACTAGTGCCAATCAACGAACTAAAGCTTGAAGTGTCCGACAGCTGCA
GCGTAACAAGCGTCTCATGTGAGTCGGTAGTTTCTGGCAACCTGGAGTGGCTTGTAGTCAGTTGG
GATCCAGTGACCAAGTGCGTTGTGCTTTCGGTGTCAGCCAATTGA
Right flanking sequence: Indices 4047 -- 4546
AAAGACCTACTCGAACTACTTTCAACTGATTCAAAGTAGCTCGACAACAGAGTGGCCAACGACCC
GTTAGAATCAGTGTCCTCAAACTGTTGAAGAGTTACTGAGTCCAGTTGGGAATCAGTTTCCAGTG
GTGTATACAGCTCCTCGGTCCCAGAGGTGAATGGGACGTCACCACCCAATTCGCCACTGGTGGTA
GCCAACGACCCGCTCGAACCACTTTCAGCTGATTCAAAGTAGCTCGACAACAGAGTGGCCAACGA
CCCGTTAGAGTCAGTGTCCTCAGACTGTTGAAGAGTTACTGAGTCCAGTTGGAAAGCAGTTTCCA
GTGGTGTATACAGCTCCTCGGCCCCAGAAGTGGATGGGACGCTCGTGGTTTGAGTGTTTGATGAT
TCGTAGGTCAGCTCCACCACTGAGACACTGATGCTTGTCAGATCTACTTCATCACCTAAAAACTC
CAGACTTGCTGATTCAGACGTGTCAAACAGGATCAGCTCCACCAG
Found at i:4353 original size:198 final size:198
Alignment explanation
Indices: 4015--4412 Score: 652
Period size: 198 Copynumber: 2.0 Consensus size: 198
4005 GAGTCACTAT
* * * * *
4015 CGTCACCACTCAGTTCGCCACGGGTGGTAGTCAAAGACCTACTCGAACTACTTTCAACTGATTCA
1 CGTCACCACCCAATTCGCCACGGGTGGTAGCCAAAGACCCACTCGAACCACTTTCAACTGATTCA
4080 AAGTAGCTCGACAACAGAGTGGCCAACGACCCGTTAGAATCAGTGTCCTCAAACTGTTGAAGAGT
66 AAGTAGCTCGACAACAGAGTGGCCAACGACCCGTTAGAATCAGTGTCCTCAAACTGTTGAAGAGT
* * * *
4145 TACTGAGTCCAGTTGGGAATCAGTTTCCAGTGGTGTATACAGCTCCTCGGTCCCAGAGGTGAATG
131 TACTGAGTCCAGTTGGAAAGCAGTTTCCAGTGGTGTATACAGCTCCTCGGCCCCAGAAGTGAATG
4210 GGA
196 GGA
* * * *
4213 CGTCACCACCCAATTCGCCACTGGTGGTAGCCAACGACCCGCTCGAACCACTTTCAGCTGATTCA
1 CGTCACCACCCAATTCGCCACGGGTGGTAGCCAAAGACCCACTCGAACCACTTTCAACTGATTCA
* *
4278 AAGTAGCTCGACAACAGAGTGGCCAACGACCCGTTAGAGTCAGTGTCCTCAGACTGTTGAAGAGT
66 AAGTAGCTCGACAACAGAGTGGCCAACGACCCGTTAGAATCAGTGTCCTCAAACTGTTGAAGAGT
*
4343 TACTGAGTCCAGTTGGAAAGCAGTTTCCAGTGGTGTATACAGCTCCTCGGCCCCAGAAGTGGATG
131 TACTGAGTCCAGTTGGAAAGCAGTTTCCAGTGGTGTATACAGCTCCTCGGCCCCAGAAGTGAATG
4408 GGA
196 GGA
4411 CG
1 CG
4413 CTCGTGGTTT
Statistics
Matches: 184, Mismatches: 16, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
198 184 1.00
ACGTcount: A:0.26, C:0.26, G:0.25, T:0.22
Consensus pattern (198 bp):
CGTCACCACCCAATTCGCCACGGGTGGTAGCCAAAGACCCACTCGAACCACTTTCAACTGATTCA
AAGTAGCTCGACAACAGAGTGGCCAACGACCCGTTAGAATCAGTGTCCTCAAACTGTTGAAGAGT
TACTGAGTCCAGTTGGAAAGCAGTTTCCAGTGGTGTATACAGCTCCTCGGCCCCAGAAGTGAATG
GGA
Left flanking sequence: Indices 3515 -- 4014
ACTAGTTTCGGAATGTTGGTCATTGCTCGAGGTTGCCGTCACATGAGACTCGAAGTAATCATCAG
GCACAATCTCAAAATCGTCGACTAGATCGGGCAAGCTATGGGTGTCCCAAAAGTCGTCGGAGCTG
GCAGTTTTAGACAATTTAGAAATGATGGAAGTCAGATCATGGGAAGTGATAGTTGATTCCGTGAT
GTCTCCATCGGAGGCCAGGTCTGTACTAGTGCCAATCAACGAACTAAAGCTTGAAGTGTCCGACA
GCTGCAGCGTAACAAGCGTCTCATGTGAGTCGGTAGTTTCTGGCAACCTGGAGTGGCTTGTAGTC
AGTTGGGATCCAGTGACCAAGTGCGTTGTGCTTTCGGTGTCAGCCAATTGAGATTGACTCGAAGT
GGGGGTGGTTGTCCCATTAGAGTCACTATCGTCACCACTCAATTCGCCATTGGTGGTAGTCGAGG
ATTGACCCGAAGTGGGGGTGGCGGTTGACCCACTAGAGTCACTAT
Right flanking sequence: Indices 4413 -- 4912
CTCGTGGTTTGAGTGTTTGATGATTCGTAGGTCAGCTCCACCACTGAGACACTGATGCTTGTCAG
ATCTACTTCATCACCTAAAAACTCCAGACTTGCTGATTCAGACGTGTCAAACAGGATCAGCTCCA
CCAGTGACTCCACAGAATCGTGTGTTTCAACCGAATGAGAAAAATATGGGCTCAGATCAGCCGTA
GATGAAGACTCGACGGATGTGAGTATAGTCTCAGAAGAGTTCAGCTCAGTCATCGATGAAGACTC
GACGGTTGTGATTTTAGTCTCAGAATAGTTTGAGCTCAGCTCAGCCGTCGATGAAGACTCGGTGG
ATGTCAGTATAGTCTCGGAATAGTTTGAGCTCAGGTCAGCTGTAGAAGATGACGATGTAACCTCA
GAATATACTGAGCTGAACTCCGCTGTGGTTGCAAACTCCGTTGACGACAGTGTAGACTCCGCTGT
TTGGCTAACTAGAGAGCTCAGCTCAGCCGTAGATGAAGATTCCAT
Found at i:4714 original size:60 final size:60
Alignment explanation
Indices: 4592--4777 Score: 204
Period size: 60 Copynumber: 3.2 Consensus size: 60
4582 AAAAATATGG
* * *
4592 GCTCAGATCAGCCGTAGATGAAGACTCGACGGATGTGAGTATAGTCTCAG-A-A----GA
1 GCTCAGCTCAGCCATCGATGAAGACTCGACGGATGTGAGTATAGTCTCAGAATAGTTTGA
* * * * *
4646 GTTCAGCTCAGTCATCGATGAAGACTCGACGGTTGTGATTTTAGTCTCAGAATAGTTTGA
1 GCTCAGCTCAGCCATCGATGAAGACTCGACGGATGTGAGTATAGTCTCAGAATAGTTTGA
* ** * *
4706 GCTCAGCTCAGCCGTCGATGAAGACTCGGTGGATGTCAGTATAGTCTCGGAATAGTTTGA
1 GCTCAGCTCAGCCATCGATGAAGACTCGACGGATGTGAGTATAGTCTCAGAATAGTTTGA
*
4766 GCTCAGGTCAGC
1 GCTCAGCTCAGC
4778 TGTAGAAGAT
Statistics
Matches: 107, Mismatches: 19, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
54 42 0.39
55 1 0.01
56 1 0.01
60 63 0.59
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.26
Consensus pattern (60 bp):
GCTCAGCTCAGCCATCGATGAAGACTCGACGGATGTGAGTATAGTCTCAGAATAGTTTGA
Left flanking sequence: Indices 4092 -- 4591
AACAGAGTGGCCAACGACCCGTTAGAATCAGTGTCCTCAAACTGTTGAAGAGTTACTGAGTCCAG
TTGGGAATCAGTTTCCAGTGGTGTATACAGCTCCTCGGTCCCAGAGGTGAATGGGACGTCACCAC
CCAATTCGCCACTGGTGGTAGCCAACGACCCGCTCGAACCACTTTCAGCTGATTCAAAGTAGCTC
GACAACAGAGTGGCCAACGACCCGTTAGAGTCAGTGTCCTCAGACTGTTGAAGAGTTACTGAGTC
CAGTTGGAAAGCAGTTTCCAGTGGTGTATACAGCTCCTCGGCCCCAGAAGTGGATGGGACGCTCG
TGGTTTGAGTGTTTGATGATTCGTAGGTCAGCTCCACCACTGAGACACTGATGCTTGTCAGATCT
ACTTCATCACCTAAAAACTCCAGACTTGCTGATTCAGACGTGTCAAACAGGATCAGCTCCACCAG
TGACTCCACAGAATCGTGTGTTTCAACCGAATGAGAAAAATATGG
Right flanking sequence: Indices 4778 -- 5277
TGTAGAAGATGACGATGTAACCTCAGAATATACTGAGCTGAACTCCGCTGTGGTTGCAAACTCCG
TTGACGACAGTGTAGACTCCGCTGTTTGGCTAACTAGAGAGCTCAGCTCAGCCGTAGATGAAGAT
TCCATTGAAGACAGTGTTGGCTCTGGCTTCTCGGCCGTTGAGGTACAAGCACCACATTTTGGGTC
AGTCGCAGCTCCTGAAGGGACGGGTCCATGGTACTCAATTGCATCACGGATCGGGAACCCAAAGG
ACAGGAATAATCTGGTCACAATCGCAAATCGATTGGGATCGTAACCAGGACCGATATCAAACTTT
TGATTCGTAAATCCAAAGTAGTCAAGATTGAGAGTGAGAATATTTCCTGAATACGAGTAACTGAA
GATCTTCATTGAATTGCCGATCTTCATTCCCTCGCCGAAACCCCGCACAGTGTAATAACTGTTTG
ACCATCCCCAAGAGGACGTTAAAATCTCTCCTGTCGAACCCGGGC
Found at i:7417 original size:16 final size:16
Alignment explanation
Indices: 7396--7428 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
7386 CAAAATCGAA
7396 CAGCTTAGGTCTGAAT
1 CAGCTTAGGTCTGAAT
7412 CAGCTTAGGTCTGAAT
1 CAGCTTAGGTCTGAAT
7428 C
1 C
7429 CTTCGGAAGA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.24, C:0.21, G:0.24, T:0.30
Consensus pattern (16 bp):
CAGCTTAGGTCTGAAT
Left flanking sequence: Indices 6896 -- 7395
GCTCATACATCTTGGTTGGATATATCAATTCACTGTGGCGCGCTCAATTGCAAAGCCTTTGTGGC
CTGGGCTTGGTTTTGTGTATGACAGGGTTCCAGTAGACACCTTGTAGAGACCTGGTGAGATTGCA
ACGTATGGATAGGGGAGAGAGCCCCAAGGGTTAAATACGCCATGGCGTGATAAAAGTTTACGTAA
TAATTTACCAGAGGCCAGCGTTTTCCGGAATGGTTGCAAATGATGGATCGAAAGTGCTCTGAAAG
CGTGCTTACTAAATATTAGTAACCGTTTCGGTAGTTTCTCGCTCGGTGTTCATCGTCTTAAATGG
GCATTGGTTTCAAGAATCGAATTCTTTGGATATTATGGGTGATTCCAAAACTGCTTTCCGCTACT
CCCAAACCGTTTCCACAATCTAATGGTTGTCTTCTTTGTTTTACATCCAATGGCTGCAAAACTTC
ACCTCCTCGCTGGCTGGACAGTTCGCTTAGGTTGTCAAAATCGAA
Right flanking sequence: Indices 7429 -- 7928
CTTCGGAAGATTCTCGCACTGTTTGAATTTATCCAGAGAACTCCATAATTCAGGCAGAGAGCCTT
TTTACAATGATTGATTTGCTGTTCAACATAGATCCGATGAGAAGCATGACCGTTGTATAAACGCG
TCTACAAGTGAAGGTTGTGAGCTGCAGAAGCACGTCAACACCCGGTGAAGTTGAGTGTCTGCCTA
CATTCTGCCCTGCTTGTCTACCTGTACGGAATTGACAACGCTAACCATCACTACTGCCAGCAACA
CCCTGCTCAATTGGTCAAATTACACGTGTTCAATCAAGTATCTGTCGCACCATGTCGTTGTTCGT
ATTTGCCACACACTTCCAGGGGCGCATGCACCTGATAATTCGGACCTATGTGCACGTCGTGATCT
GGTGATATAAGACCACCCAGCGAGCCCATCTTTTATCATGTGGTGGACACTCATTGTCTCCCTCG
TGATCTTCTGGTGGATTGCCGACAGCTTCCTTGTGGGTGTCCGCC
Found at i:11479 original size:22 final size:22
Alignment explanation
Indices: 11454--11505 Score: 56
Period size: 21 Copynumber: 2.5 Consensus size: 22
11444 TGAACCATTG
*
11454 CTCTTCACA-CCTAAATGGGGTA
1 CTCTTCA-ATCCTAAATGGGATA
*
11476 CTC-TCAATCCTGAATGGGATA
1 CTCTTCAATCCTAAATGGGATA
11497 CTC-TCAATC
1 CTCTTCAATC
11506 ATCTCGTCTA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
20 1 0.04
21 23 0.85
22 3 0.11
ACGTcount: A:0.27, C:0.29, G:0.15, T:0.29
Consensus pattern (22 bp):
CTCTTCAATCCTAAATGGGATA
Left flanking sequence: Indices 10954 -- 11453
CCTGCTGGGCGGGACAGCGTCAAATCAGCAAAGCCAGCTGGGTGGAACTTCTGAGACCGACCTGT
CGCCGTCTGACGTCTCACAGGCCTCTTTCACAGAGCCTCAGACCGAGTCAAGCAGCGAGAATGAA
GGGTCCACTGCATCAAAGACTGAGAGCGTGGAGTCCAGTGCTGAGGTGACCTCCAACCAGAACTC
CGTCTCTGGTGCTGAGCTGACCGCCTCCTCCACCACTGAGTCCGCCTCCAAAGCTGAGCTGCTGG
CAAACTCGGCTAAAACAGACTCCACTGCCCAAGAACAGACTACAGAAGCTGAAAAGACACAATCC
GCGTCCAAGTCCGACAACGCTGGCGCCACCGTAGGGGTTGGTGCGGTTGTAGGCTTGCTTGTGCT
TGTGATGTTGTAATATACTCTGAACAAGTGATCTAGAGTGATCTATTTTAATAGCGTCCTAGGAT
AGTGACGCTCATAATGGCATTTAATACACAGAATATGAACCATTG
Right flanking sequence: Indices 11506 -- 12005
ATCTCGTCTAAATTCTTCAGTGGTCTAGGTCACGCCTGTTTGGTAGCCAAACTGAAAATACCGGT
AGCGTTTGACCTGTGCCTTGATAATTTCAGTCGCGACAGACCTATGCTTTCGTAATAGTGGTCGT
AACGGACCGATACCCGACTCGTATCGCGCCCAAAGCGGACAGAGCGGAACACGGGAACCGTGGCC
CGCATTCCGTTGCAACGAGCAACCACCCCTACTCAATTCCTCCTCCGGTCCCTCTTCCCCTCCTT
TCGCAACTATTTAATCACCCAACATTCCCAGCATTGCACGGAAATTCCTAGCTCAAAGAACCACT
GATCTACCAACAACTAAACTACAAACAAGTAAACCACAAACCACAATGTGATCAAGCCAGCAACA
CCCACCAGACCGCCCACTTGACCGCCCACTTTCACACTCTAATCCGCCGTACCCCACGCGCGACG
TGGCGATTGCGAGCCCCGCACCAACGCGTTTATGTTTTCGCCAGC
Found at i:14452 original size:20 final size:21
Alignment explanation
Indices: 14414--14456 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
14404 CGTGGTTGGT
*
14414 GTCTACAGTGGTGATTGGGTG
1 GTCTACAGTGGTGAATGGGTG
*
14435 GTCTATAGTGGT-AATGGGTG
1 GTCTACAGTGGTGAATGGGTG
14455 GT
1 GT
14457 GCTGGGGTGG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 9 0.45
21 11 0.55
ACGTcount: A:0.16, C:0.07, G:0.42, T:0.35
Consensus pattern (21 bp):
GTCTACAGTGGTGAATGGGTG
Left flanking sequence: Indices 13914 -- 14413
ACCGGATCTTGTTGTTGGACACCTTTTTCCACATTTTGATTTTCCACGGCAAGACGATTGCCCAG
TGGAAGAAGGCGGGGTACCAGGACCAGCCCGAGTACGAGAACTTCCGCCAGTTGTTGGACGAGCC
CAAGCAGGAGGCCAAGGAGCTTTTGATCGACCGGTACCCGTTGCCGCGGTACATTGTCACCGAGG
AGGGCGGGTCGCAGGCGCGGTTCTTGTTGTCGAAGCTTAACCCGTCGACCACCTACAACTCGAAC
GAGTTTGCCACCAACAACGGCGCCATTGTGTTGACCGACGACGTGTCGTTGCAGGTGTTTATGGA
CCACTTGCGCAAGTTGGTGGTGTCGGGGTCGAGCTAGATAGGGGAAAATGAATGTAATATAGGGG
ATGATGCGTGTAGGGGAAGGTAGTGGGGGGTATTGATGAAGGACTTAGTGGAGGGCACTGGAGGG
GTGTAGATTAAGGGAGGTAATGGACGTAGTTTGGGCGTGGTTGGT
Right flanking sequence: Indices 14457 -- 14956
GCTGGGGTGGAATTGAAGTGGGGAAGTTAGCTTATTTAGGGGGAGTTAGCCTATTTGTAGTGGGG
AGTTAGTCTATCGGTGGTGGGAAGGCCTATCTGGTGGGGAGTTCGCCTATTTCTACTTCGTTGCT
TCTCACGTGACTCCATTTATTCATCTCCTGCATGTAACTGGCTGCAAAACTACTCTGGCAACAAC
GGGTTCTCCTCGTTGTCGATTTCCTCCGAGCAAAGGCCCAAAAAGTCTAGGGCCACCACTAAAAA
GATCCCCACAGAGAGCAGCACGTGCGGTAAGCTCTCCTTAAACAGAAACAACGTGTTGGCAATGG
TGATCAACGAGTTGTAGATGGGCACGTCACACATTCTCATGCGGATAACCCCACTAACAATGGTA
CCGGCGATCCACAACAGCCGGAGCAAGATCTGAGCTGGGGTCAACGAGGGCCAGTCGCGGACGAG
ACGCCAGAGGAGCTCGGCCAAAAGGATCCATCCGGGGGTGTGGGT
Found at i:14524 original size:22 final size:21
Alignment explanation
Indices: 14473--14532 Score: 70
Period size: 22 Copynumber: 2.9 Consensus size: 21
14463 GTGGAATTGA
*
14473 AGTGGGGAAGTTAGCTTA-TTT
1 AGTGGGG-AGTTAGCCTATTTT
14494 AG-GGGGAGTTAGCCTATTTGT
1 AGTGGGGAGTTAGCCTATTT-T
*
14515 AGTGGGGAGTTAGTCTAT
1 AGTGGGGAGTTAGCCTAT
14533 CGGTGGTGGG
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
19 9 0.26
20 6 0.18
21 5 0.15
22 14 0.41
ACGTcount: A:0.22, C:0.07, G:0.37, T:0.35
Consensus pattern (21 bp):
AGTGGGGAGTTAGCCTATTTT
Left flanking sequence: Indices 13973 -- 14472
GCCCAGTGGAAGAAGGCGGGGTACCAGGACCAGCCCGAGTACGAGAACTTCCGCCAGTTGTTGGA
CGAGCCCAAGCAGGAGGCCAAGGAGCTTTTGATCGACCGGTACCCGTTGCCGCGGTACATTGTCA
CCGAGGAGGGCGGGTCGCAGGCGCGGTTCTTGTTGTCGAAGCTTAACCCGTCGACCACCTACAAC
TCGAACGAGTTTGCCACCAACAACGGCGCCATTGTGTTGACCGACGACGTGTCGTTGCAGGTGTT
TATGGACCACTTGCGCAAGTTGGTGGTGTCGGGGTCGAGCTAGATAGGGGAAAATGAATGTAATA
TAGGGGATGATGCGTGTAGGGGAAGGTAGTGGGGGGTATTGATGAAGGACTTAGTGGAGGGCACT
GGAGGGGTGTAGATTAAGGGAGGTAATGGACGTAGTTTGGGCGTGGTTGGTGTCTACAGTGGTGA
TTGGGTGGTCTATAGTGGTAATGGGTGGTGCTGGGGTGGAATTGA
Right flanking sequence: Indices 14533 -- 15032
CGGTGGTGGGAAGGCCTATCTGGTGGGGAGTTCGCCTATTTCTACTTCGTTGCTTCTCACGTGAC
TCCATTTATTCATCTCCTGCATGTAACTGGCTGCAAAACTACTCTGGCAACAACGGGTTCTCCTC
GTTGTCGATTTCCTCCGAGCAAAGGCCCAAAAAGTCTAGGGCCACCACTAAAAAGATCCCCACAG
AGAGCAGCACGTGCGGTAAGCTCTCCTTAAACAGAAACAACGTGTTGGCAATGGTGATCAACGAG
TTGTAGATGGGCACGTCACACATTCTCATGCGGATAACCCCACTAACAATGGTACCGGCGATCCA
CAACAGCCGGAGCAAGATCTGAGCTGGGGTCAACGAGGGCCAGTCGCGGACGAGACGCCAGAGGA
GCTCGGCCAAAAGGATCCATCCGGGGGTGTGGGTGATAGCTTGTTTACCGAGTTTGGCGACAGTA
AAAGACATTTGGGGTCGGGTGGTGGTCGCGTGGTATTTTGGAGGC
Found at i:14541 original size:22 final size:22
Alignment explanation
Indices: 14496--14542 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
14486 GCTTATTTAG
**
14496 GGGGAGTTAGCCTATTTGTAGT
1 GGGGAGTTAGCCTATCGGTAGT
* *
14518 GGGGAGTTAGTCTATCGGTGGT
1 GGGGAGTTAGCCTATCGGTAGT
14540 GGG
1 GGG
14543 AAGGCCTATC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.15, C:0.09, G:0.45, T:0.32
Consensus pattern (22 bp):
GGGGAGTTAGCCTATCGGTAGT
Left flanking sequence: Indices 13996 -- 14495
CCAGGACCAGCCCGAGTACGAGAACTTCCGCCAGTTGTTGGACGAGCCCAAGCAGGAGGCCAAGG
AGCTTTTGATCGACCGGTACCCGTTGCCGCGGTACATTGTCACCGAGGAGGGCGGGTCGCAGGCG
CGGTTCTTGTTGTCGAAGCTTAACCCGTCGACCACCTACAACTCGAACGAGTTTGCCACCAACAA
CGGCGCCATTGTGTTGACCGACGACGTGTCGTTGCAGGTGTTTATGGACCACTTGCGCAAGTTGG
TGGTGTCGGGGTCGAGCTAGATAGGGGAAAATGAATGTAATATAGGGGATGATGCGTGTAGGGGA
AGGTAGTGGGGGGTATTGATGAAGGACTTAGTGGAGGGCACTGGAGGGGTGTAGATTAAGGGAGG
TAATGGACGTAGTTTGGGCGTGGTTGGTGTCTACAGTGGTGATTGGGTGGTCTATAGTGGTAATG
GGTGGTGCTGGGGTGGAATTGAAGTGGGGAAGTTAGCTTATTTAG
Right flanking sequence: Indices 14543 -- 15042
AAGGCCTATCTGGTGGGGAGTTCGCCTATTTCTACTTCGTTGCTTCTCACGTGACTCCATTTATT
CATCTCCTGCATGTAACTGGCTGCAAAACTACTCTGGCAACAACGGGTTCTCCTCGTTGTCGATT
TCCTCCGAGCAAAGGCCCAAAAAGTCTAGGGCCACCACTAAAAAGATCCCCACAGAGAGCAGCAC
GTGCGGTAAGCTCTCCTTAAACAGAAACAACGTGTTGGCAATGGTGATCAACGAGTTGTAGATGG
GCACGTCACACATTCTCATGCGGATAACCCCACTAACAATGGTACCGGCGATCCACAACAGCCGG
AGCAAGATCTGAGCTGGGGTCAACGAGGGCCAGTCGCGGACGAGACGCCAGAGGAGCTCGGCCAA
AAGGATCCATCCGGGGGTGTGGGTGATAGCTTGTTTACCGAGTTTGGCGACAGTAAAAGACATTT
GGGGTCGGGTGGTGGTCGCGTGGTATTTTGGAGGCTATATACCTG
Found at i:15154 original size:29 final size:26
Alignment explanation
Indices: 15122--15174 Score: 61
Period size: 29 Copynumber: 1.9 Consensus size: 26
15112 ATTGAGACGG
*
15122 GTGGAGGGGGGGATTGAGGAGTGGTGGAA
1 GTGGAGGAGGGG-TTGA--AGTGGTGGAA
*
15151 GTGGTGGAGGGGTTGAAGTGGTGG
1 GTGGAGGAGGGGTTGAAGTGGTGG
15175 TGGGGTTGAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
26 8 0.36
28 4 0.18
29 10 0.45
ACGTcount: A:0.17, C:0.00, G:0.62, T:0.21
Consensus pattern (26 bp):
GTGGAGGAGGGGTTGAAGTGGTGGAA
Left flanking sequence: Indices 14622 -- 15121
AACTGGCTGCAAAACTACTCTGGCAACAACGGGTTCTCCTCGTTGTCGATTTCCTCCGAGCAAAG
GCCCAAAAAGTCTAGGGCCACCACTAAAAAGATCCCCACAGAGAGCAGCACGTGCGGTAAGCTCT
CCTTAAACAGAAACAACGTGTTGGCAATGGTGATCAACGAGTTGTAGATGGGCACGTCACACATT
CTCATGCGGATAACCCCACTAACAATGGTACCGGCGATCCACAACAGCCGGAGCAAGATCTGAGC
TGGGGTCAACGAGGGCCAGTCGCGGACGAGACGCCAGAGGAGCTCGGCCAAAAGGATCCATCCGG
GGGTGTGGGTGATAGCTTGTTTACCGAGTTTGGCGACAGTAAAAGACATTTGGGGTCGGGTGGTG
GTCGCGTGGTATTTTGGAGGCTATATACCTGTGTGGGTCATCACGGAGCCAGTGACTCCGTTGTC
ATGGCCACGCGTTTCAGGTGCAAGGGGCGATTATAATTGAGACGG
Right flanking sequence: Indices 15175 -- 15674
TGGGGTTGAAGTGGTGGTGGTGACCTATGGGTTGGTGTAGTTAGTGGCTGACTTTTGGTTGATTG
GGTCACTTTTGGCCACTATTTACGAATAGTCTTTGAAGCTCGTAACCTCGTAACCTCAGTCGAGA
TCGATTGAAATACACTTGAAAATGGGCTGATTGGCGTGTGGGTGATTCGCTAGTCATCAAAGTGT
TGTGATGGTGTACCATGCCTCCGGATGCGTTGGTTTTACTGTGGTAGCTTGTTCAGTTCTGGTCA
CTAACAGGGTATATTTCACGACCTACCTCAAGAGCCACACAAGTTGCAATGCTCCACCAACTGTA
GAAAGAACGGTTGAGAAAGAGTTGGTGTAGACACTCTATTTCCTCGACTGATTCGCTTCTCAACC
AATTGATCAAGTGGCTTCCCCGCAGCACAATCTCCACACACGCTCCACACAGCTCCACACGCGTC
ACACGCGTCACACATGCCATGTCCCACATATTCCACACACTCTAC
Found at i:15196 original size:20 final size:17
Alignment explanation
Indices: 15148--15194 Score: 85
Period size: 17 Copynumber: 2.8 Consensus size: 17
15138 AGGAGTGGTG
*
15148 GAAGTGGTGGAGGGGTT
1 GAAGTGGTGGTGGGGTT
15165 GAAGTGGTGGTGGGGTT
1 GAAGTGGTGGTGGGGTT
15182 GAAGTGGTGGTGG
1 GAAGTGGTGGTGG
15195 TGACCTATGG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
17 29 1.00
ACGTcount: A:0.15, C:0.00, G:0.60, T:0.26
Consensus pattern (17 bp):
GAAGTGGTGGTGGGGTT
Left flanking sequence: Indices 14648 -- 15147
CAACGGGTTCTCCTCGTTGTCGATTTCCTCCGAGCAAAGGCCCAAAAAGTCTAGGGCCACCACTA
AAAAGATCCCCACAGAGAGCAGCACGTGCGGTAAGCTCTCCTTAAACAGAAACAACGTGTTGGCA
ATGGTGATCAACGAGTTGTAGATGGGCACGTCACACATTCTCATGCGGATAACCCCACTAACAAT
GGTACCGGCGATCCACAACAGCCGGAGCAAGATCTGAGCTGGGGTCAACGAGGGCCAGTCGCGGA
CGAGACGCCAGAGGAGCTCGGCCAAAAGGATCCATCCGGGGGTGTGGGTGATAGCTTGTTTACCG
AGTTTGGCGACAGTAAAAGACATTTGGGGTCGGGTGGTGGTCGCGTGGTATTTTGGAGGCTATAT
ACCTGTGTGGGTCATCACGGAGCCAGTGACTCCGTTGTCATGGCCACGCGTTTCAGGTGCAAGGG
GCGATTATAATTGAGACGGGTGGAGGGGGGGATTGAGGAGTGGTG
Right flanking sequence: Indices 15195 -- 15694
TGACCTATGGGTTGGTGTAGTTAGTGGCTGACTTTTGGTTGATTGGGTCACTTTTGGCCACTATT
TACGAATAGTCTTTGAAGCTCGTAACCTCGTAACCTCAGTCGAGATCGATTGAAATACACTTGAA
AATGGGCTGATTGGCGTGTGGGTGATTCGCTAGTCATCAAAGTGTTGTGATGGTGTACCATGCCT
CCGGATGCGTTGGTTTTACTGTGGTAGCTTGTTCAGTTCTGGTCACTAACAGGGTATATTTCACG
ACCTACCTCAAGAGCCACACAAGTTGCAATGCTCCACCAACTGTAGAAAGAACGGTTGAGAAAGA
GTTGGTGTAGACACTCTATTTCCTCGACTGATTCGCTTCTCAACCAATTGATCAAGTGGCTTCCC
CGCAGCACAATCTCCACACACGCTCCACACAGCTCCACACGCGTCACACGCGTCACACATGCCAT
GTCCCACATATTCCACACACTCTACAAGCCTACACACACTCACAT
Found at i:15709 original size:16 final size:16
Alignment explanation
Indices: 15688--15725 Score: 76
Period size: 16 Copynumber: 2.4 Consensus size: 16
15678 CCTACACACA
15688 CTCACATCTCACCCTC
1 CTCACATCTCACCCTC
15704 CTCACATCTCACCCTC
1 CTCACATCTCACCCTC
15720 CTCACA
1 CTCACA
15726 CCCTCCTCAC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.21, C:0.55, G:0.00, T:0.24
Consensus pattern (16 bp):
CTCACATCTCACCCTC
Left flanking sequence: Indices 15188 -- 15687
GTGGTGGTGACCTATGGGTTGGTGTAGTTAGTGGCTGACTTTTGGTTGATTGGGTCACTTTTGGC
CACTATTTACGAATAGTCTTTGAAGCTCGTAACCTCGTAACCTCAGTCGAGATCGATTGAAATAC
ACTTGAAAATGGGCTGATTGGCGTGTGGGTGATTCGCTAGTCATCAAAGTGTTGTGATGGTGTAC
CATGCCTCCGGATGCGTTGGTTTTACTGTGGTAGCTTGTTCAGTTCTGGTCACTAACAGGGTATA
TTTCACGACCTACCTCAAGAGCCACACAAGTTGCAATGCTCCACCAACTGTAGAAAGAACGGTTG
AGAAAGAGTTGGTGTAGACACTCTATTTCCTCGACTGATTCGCTTCTCAACCAATTGATCAAGTG
GCTTCCCCGCAGCACAATCTCCACACACGCTCCACACAGCTCCACACGCGTCACACGCGTCACAC
ATGCCATGTCCCACATATTCCACACACTCTACAAGCCTACACACA
Right flanking sequence: Indices 15726 -- 16225
CCCTCCTCACACCCTCCTCACACCCTCCTCACATACACACCCTCCGCACACATCCGGACTCTTAT
CCTGACACTCTTTCACTTTAACCCGGCTCCCGACTAACCCATTCCTTCCCCCTACACTTCCGTCT
ACCCTCCTTCCCCCTACACTTTCGTCTACCCTCCTTCTCCCTACACTTTCTACCCCCCCTTTGTC
TCATTTCTTTCATTTCTCATACATTCGTAAGCTTGATCTTATCCAACTTGGTCTTTTTGGTGCAC
CCGGGCACCAGCCGGTGGCGCCGCTTCGGCAGCACCGCCTCCACCCACGGCGCGGTGTCGGGGGT
CAGCGCCCCCAGCGCGCACACCTCGTAGCTCTCCACCGCCGGCGGGGAGGTGCCGTCGCCAAACA
CCCGCTCCATGTCGCGGTGGGTGCCGAGCACACACGCCAGCGGGGCTGCCAGCGGGCACGACACC
CGGCTCACCATCACCGCCTGGGTCAGCAGCGGGCGGAGCTTAAAC
Found at i:15776 original size:11 final size:11
Alignment explanation
Indices: 15713--15758 Score: 92
Period size: 11 Copynumber: 4.2 Consensus size: 11
15703 CCTCACATCT
15713 CACCCTCCTCA
1 CACCCTCCTCA
15724 CACCCTCCTCA
1 CACCCTCCTCA
15735 CACCCTCCTCA
1 CACCCTCCTCA
15746 CACCCTCCTCA
1 CACCCTCCTCA
15757 CA
1 CA
15759 TACACACCCT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 35 1.00
ACGTcount: A:0.20, C:0.63, G:0.00, T:0.17
Consensus pattern (11 bp):
CACCCTCCTCA
Left flanking sequence: Indices 15213 -- 15712
AGTTAGTGGCTGACTTTTGGTTGATTGGGTCACTTTTGGCCACTATTTACGAATAGTCTTTGAAG
CTCGTAACCTCGTAACCTCAGTCGAGATCGATTGAAATACACTTGAAAATGGGCTGATTGGCGTG
TGGGTGATTCGCTAGTCATCAAAGTGTTGTGATGGTGTACCATGCCTCCGGATGCGTTGGTTTTA
CTGTGGTAGCTTGTTCAGTTCTGGTCACTAACAGGGTATATTTCACGACCTACCTCAAGAGCCAC
ACAAGTTGCAATGCTCCACCAACTGTAGAAAGAACGGTTGAGAAAGAGTTGGTGTAGACACTCTA
TTTCCTCGACTGATTCGCTTCTCAACCAATTGATCAAGTGGCTTCCCCGCAGCACAATCTCCACA
CACGCTCCACACAGCTCCACACGCGTCACACGCGTCACACATGCCATGTCCCACATATTCCACAC
ACTCTACAAGCCTACACACACTCACATCTCACCCTCCTCACATCT
Right flanking sequence: Indices 15759 -- 16258
TACACACCCTCCGCACACATCCGGACTCTTATCCTGACACTCTTTCACTTTAACCCGGCTCCCGA
CTAACCCATTCCTTCCCCCTACACTTCCGTCTACCCTCCTTCCCCCTACACTTTCGTCTACCCTC
CTTCTCCCTACACTTTCTACCCCCCCTTTGTCTCATTTCTTTCATTTCTCATACATTCGTAAGCT
TGATCTTATCCAACTTGGTCTTTTTGGTGCACCCGGGCACCAGCCGGTGGCGCCGCTTCGGCAGC
ACCGCCTCCACCCACGGCGCGGTGTCGGGGGTCAGCGCCCCCAGCGCGCACACCTCGTAGCTCTC
CACCGCCGGCGGGGAGGTGCCGTCGCCAAACACCCGCTCCATGTCGCGGTGGGTGCCGAGCACAC
ACGCCAGCGGGGCTGCCAGCGGGCACGACACCCGGCTCACCATCACCGCCTGGGTCAGCAGCGGG
CGGAGCTTAAACACGGCGAGCGAGTGGTCCATGGCGGTGACCACG
Found at i:15904 original size:27 final size:27
Alignment explanation
Indices: 15833--15905 Score: 128
Period size: 27 Copynumber: 2.7 Consensus size: 27
15823 ACTAACCCAT
*
15833 TCCTTCCCCCTACACTTCCGTCTACCC
1 TCCTTCCCCCTACACTTTCGTCTACCC
15860 TCCTTCCCCCTACACTTTCGTCTACCC
1 TCCTTCCCCCTACACTTTCGTCTACCC
*
15887 TCCTTCTCCCTACACTTTC
1 TCCTTCCCCCTACACTTTC
15906 TACCCCCCCT
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 44 1.00
ACGTcount: A:0.11, C:0.52, G:0.03, T:0.34
Consensus pattern (27 bp):
TCCTTCCCCCTACACTTTCGTCTACCC
Left flanking sequence: Indices 15333 -- 15832
GATTGGCGTGTGGGTGATTCGCTAGTCATCAAAGTGTTGTGATGGTGTACCATGCCTCCGGATGC
GTTGGTTTTACTGTGGTAGCTTGTTCAGTTCTGGTCACTAACAGGGTATATTTCACGACCTACCT
CAAGAGCCACACAAGTTGCAATGCTCCACCAACTGTAGAAAGAACGGTTGAGAAAGAGTTGGTGT
AGACACTCTATTTCCTCGACTGATTCGCTTCTCAACCAATTGATCAAGTGGCTTCCCCGCAGCAC
AATCTCCACACACGCTCCACACAGCTCCACACGCGTCACACGCGTCACACATGCCATGTCCCACA
TATTCCACACACTCTACAAGCCTACACACACTCACATCTCACCCTCCTCACATCTCACCCTCCTC
ACACCCTCCTCACACCCTCCTCACACCCTCCTCACATACACACCCTCCGCACACATCCGGACTCT
TATCCTGACACTCTTTCACTTTAACCCGGCTCCCGACTAACCCAT
Right flanking sequence: Indices 15906 -- 16405
TACCCCCCCTTTGTCTCATTTCTTTCATTTCTCATACATTCGTAAGCTTGATCTTATCCAACTTG
GTCTTTTTGGTGCACCCGGGCACCAGCCGGTGGCGCCGCTTCGGCAGCACCGCCTCCACCCACGG
CGCGGTGTCGGGGGTCAGCGCCCCCAGCGCGCACACCTCGTAGCTCTCCACCGCCGGCGGGGAGG
TGCCGTCGCCAAACACCCGCTCCATGTCGCGGTGGGTGCCGAGCACACACGCCAGCGGGGCTGCC
AGCGGGCACGACACCCGGCTCACCATCACCGCCTGGGTCAGCAGCGGGCGGAGCTTAAACACGGC
GAGCGAGTGGTCCATGGCGGTGACCACGGCGTACCAGCAGCTGGCGGCGGGGCTGGTGCTCTCCA
GCGCCACCACCAGCCACAGGTGCACGGGGCCCACCCCCGCAAACGAGAACCGCTGCACCACCGCC
ATCCGGGCCACGTCAATCACCCCCATCTGGGCAATGCCGTCGCAG
Found at i:17588 original size:13 final size:11
Alignment explanation
Indices: 17548--17593 Score: 69
Period size: 11 Copynumber: 4.4 Consensus size: 11
17538 GAAGGGCGGG
17548 GTGT-AGAG-A
1 GTGTGAGAGAA
*
17557 GTGCGAGAGAA
1 GTGTGAGAGAA
17568 GTGTGAGAGAA
1 GTGTGAGAGAA
17579 GTGTGAGAGAA
1 GTGTGAGAGAA
17590 GTGT
1 GTGT
17594 AGGGGGAGGA
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
9 3 0.09
10 4 0.12
11 26 0.79
ACGTcount: A:0.33, C:0.02, G:0.46, T:0.20
Consensus pattern (11 bp):
GTGTGAGAGAA
Left flanking sequence: Indices 17048 -- 17547
TAGCGGTGGCCCGCAAACCCCGCGGCCACCACGGGGTCGTCGGGCGTCACCACCAGGTTCTTCCA
CTCCTTAAACAACAGGTATTGCTCGGCCAGGCGCTCGTACAACTGGATGAGCCCCAGGGCGCGCA
CCACCGCGAGCCAGTGCTTGTGGTTGGCGGTGCGCCCCGTGAGCACCTGGGTGACGTGCGGGTGC
CCCGCCGCCACCGGGGGGCCCCACGCGCCGCGCGACACCTCCACCACGCACATGCCGCCGCCGCG
GGCCGGGGTCAGCACTAGGACGTCCATGTCGGCAGTCAGAAAACAGGGATGCCGAAGGAAGACCG
CAGGAGGAGGGGTAAACGAACAGAGTGGGGAGCTTGGTGGTTGTTAGACCTATGGGGACGTGGTG
CGGTGCGCCCGATCAAGTCGCGGGGAGCGCGGGCGGTGTGCAGGAGAGCAAGGAGACGGCGGACG
TGGAGAGGAGAGAGGAGGGTAGGTGGAGATGAGAGGAAGGGCGGG
Right flanking sequence: Indices 17594 -- 18093
AGGGGGAGGATGAGAGGAGTATGAGAGGAGTTTGAGAGGCGTATGAGAGGATGAGGATAGGAGAG
ATCAGTTAGCGGAGGATAGGTGGGAGATGTGCAGGTTTTGGTTAGGCGGTGGTGTGTGTAGAGTG
TTGGGAGGATCAGTGCGCGATCGGTGTACGTGTACTCCCCGCACATTCTTACCGTTTCAGCACCG
GGTAGTCTTGACGATAACCCGGTGTAAGCCGGAAGGAAGGAGAATGAAAGAATAGAGAATGAAAA
GAATAGAAATGAGAATGGAGAATAAGAACGAAGAATAAGAATGGAGAATAGAGAAGAGAATGAAA
ATGAGAATAGGTAGGATGAGCCCGGCTGCGTGGGTACGACGTGTCGGCAGCGTCGGGCCGTCACC
CGGCACGGCGTAGCTGTGCCTGGCCCAGCGTCGTCGTGTAGGGCGGTGCCGAGTCGGGCGTTGTT
ACGTGGCTACGTGGCGGAGAGGGTTCCCAACCGTCGGGACAGCCA
Found at i:17612 original size:11 final size:11
Alignment explanation
Indices: 17598--17644 Score: 67
Period size: 11 Copynumber: 4.3 Consensus size: 11
17588 AAGTGTAGGG
*
17598 GGAGGATGAGA
1 GGAGTATGAGA
17609 GGAGTATGAGA
1 GGAGTATGAGA
*
17620 GGAGTTTGAGA
1 GGAGTATGAGA
*
17631 GGCGTATGAGA
1 GGAGTATGAGA
17642 GGA
1 GGA
17645 TGAGGATAGG
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
11 31 1.00
ACGTcount: A:0.32, C:0.02, G:0.49, T:0.17
Consensus pattern (11 bp):
GGAGTATGAGA
Left flanking sequence: Indices 17098 -- 17597
CACCAGGTTCTTCCACTCCTTAAACAACAGGTATTGCTCGGCCAGGCGCTCGTACAACTGGATGA
GCCCCAGGGCGCGCACCACCGCGAGCCAGTGCTTGTGGTTGGCGGTGCGCCCCGTGAGCACCTGG
GTGACGTGCGGGTGCCCCGCCGCCACCGGGGGGCCCCACGCGCCGCGCGACACCTCCACCACGCA
CATGCCGCCGCCGCGGGCCGGGGTCAGCACTAGGACGTCCATGTCGGCAGTCAGAAAACAGGGAT
GCCGAAGGAAGACCGCAGGAGGAGGGGTAAACGAACAGAGTGGGGAGCTTGGTGGTTGTTAGACC
TATGGGGACGTGGTGCGGTGCGCCCGATCAAGTCGCGGGGAGCGCGGGCGGTGTGCAGGAGAGCA
AGGAGACGGCGGACGTGGAGAGGAGAGAGGAGGGTAGGTGGAGATGAGAGGAAGGGCGGGGTGTA
GAGAGTGCGAGAGAAGTGTGAGAGAAGTGTGAGAGAAGTGTAGGG
Right flanking sequence: Indices 17645 -- 18144
TGAGGATAGGAGAGATCAGTTAGCGGAGGATAGGTGGGAGATGTGCAGGTTTTGGTTAGGCGGTG
GTGTGTGTAGAGTGTTGGGAGGATCAGTGCGCGATCGGTGTACGTGTACTCCCCGCACATTCTTA
CCGTTTCAGCACCGGGTAGTCTTGACGATAACCCGGTGTAAGCCGGAAGGAAGGAGAATGAAAGA
ATAGAGAATGAAAAGAATAGAAATGAGAATGGAGAATAAGAACGAAGAATAAGAATGGAGAATAG
AGAAGAGAATGAAAATGAGAATAGGTAGGATGAGCCCGGCTGCGTGGGTACGACGTGTCGGCAGC
GTCGGGCCGTCACCCGGCACGGCGTAGCTGTGCCTGGCCCAGCGTCGTCGTGTAGGGCGGTGCCG
AGTCGGGCGTTGTTACGTGGCTACGTGGCGGAGAGGGTTCCCAACCGTCGGGACAGCCACTGGCA
ACGCCCGGCGAGGGTGGCTCGTGGCCCCACGTCGCTGGCGACCGT
Found at i:17856 original size:16 final size:16
Alignment explanation
Indices: 17828--17865 Score: 62
Period size: 15 Copynumber: 2.5 Consensus size: 16
17818 CGGAAGGAAG
17828 GAGAATG-AAAGAATA
1 GAGAATGAAAAGAATA
17843 GAGAATGAAAAGAATA
1 GAGAATGAAAAGAATA
17859 GA-AATGA
1 GAGAATGA
17866 GAATGGAGAA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
15 12 0.55
16 10 0.45
ACGTcount: A:0.61, C:0.00, G:0.26, T:0.13
Consensus pattern (16 bp):
GAGAATGAAAAGAATA
Left flanking sequence: Indices 17328 -- 17827
CGTCCATGTCGGCAGTCAGAAAACAGGGATGCCGAAGGAAGACCGCAGGAGGAGGGGTAAACGAA
CAGAGTGGGGAGCTTGGTGGTTGTTAGACCTATGGGGACGTGGTGCGGTGCGCCCGATCAAGTCG
CGGGGAGCGCGGGCGGTGTGCAGGAGAGCAAGGAGACGGCGGACGTGGAGAGGAGAGAGGAGGGT
AGGTGGAGATGAGAGGAAGGGCGGGGTGTAGAGAGTGCGAGAGAAGTGTGAGAGAAGTGTGAGAG
AAGTGTAGGGGGAGGATGAGAGGAGTATGAGAGGAGTTTGAGAGGCGTATGAGAGGATGAGGATA
GGAGAGATCAGTTAGCGGAGGATAGGTGGGAGATGTGCAGGTTTTGGTTAGGCGGTGGTGTGTGT
AGAGTGTTGGGAGGATCAGTGCGCGATCGGTGTACGTGTACTCCCCGCACATTCTTACCGTTTCA
GCACCGGGTAGTCTTGACGATAACCCGGTGTAAGCCGGAAGGAAG
Right flanking sequence: Indices 17866 -- 18365
GAATGGAGAATAAGAACGAAGAATAAGAATGGAGAATAGAGAAGAGAATGAAAATGAGAATAGGT
AGGATGAGCCCGGCTGCGTGGGTACGACGTGTCGGCAGCGTCGGGCCGTCACCCGGCACGGCGTA
GCTGTGCCTGGCCCAGCGTCGTCGTGTAGGGCGGTGCCGAGTCGGGCGTTGTTACGTGGCTACGT
GGCGGAGAGGGTTCCCAACCGTCGGGACAGCCACTGGCAACGCCCGGCGAGGGTGGCTCGTGGCC
CCACGTCGCTGGCGACCGTTGGGCAGGTGCGTCTCCGGTGCCAGACATCCTGGGCGAATGGGGCA
ATGTAGGAGGCGGAGCCGGAAGGGTGGCTAAAGGAGAGCCGGGGTGGCTCAAGGGAGAGACGTTT
GCCTACGTTTGCCCCCTAAAGTGTTTTACCAGCCTTGGCCATAGTTGCTCTGGCCCGATAATGCT
CGTCCGCGAACAATAGAAGGGATGGAGGTTCAGCCGTTCAGGGTT
Found at i:17897 original size:26 final size:26
Alignment explanation
Indices: 17828--17928 Score: 86
Period size: 26 Copynumber: 3.8 Consensus size: 26
17818 CGGAAGGAAG
* *
17828 GAGAATGAAAGAATAGAGAATGAAAAGAA
1 GAGAATG-AAGAATGGAGAAT--AGAGAA
*
17857 TAGAAATG-AGAATGGAGAATA-AGAA
1 GAG-AATGAAGAATGGAGAATAGAGAA
17882 CGAAGAAT-AAGAATGGAGAATAGAGAA
1 -G-AGAATGAAGAATGGAGAATAGAGAA
17909 GAGAATGAA-AAT-GAGAATAG
1 GAGAATGAAGAATGGAGAATAG
17929 GTAGGATGAG
Statistics
Matches: 63, Mismatches: 3, Indels: 17
0.76 0.04 0.20
Matches are distributed among these distances:
24 8 0.13
25 12 0.19
26 20 0.32
27 6 0.10
28 11 0.17
29 2 0.03
30 4 0.06
ACGTcount: A:0.57, C:0.01, G:0.29, T:0.13
Consensus pattern (26 bp):
GAGAATGAAGAATGGAGAATAGAGAA
Left flanking sequence: Indices 17328 -- 17827
CGTCCATGTCGGCAGTCAGAAAACAGGGATGCCGAAGGAAGACCGCAGGAGGAGGGGTAAACGAA
CAGAGTGGGGAGCTTGGTGGTTGTTAGACCTATGGGGACGTGGTGCGGTGCGCCCGATCAAGTCG
CGGGGAGCGCGGGCGGTGTGCAGGAGAGCAAGGAGACGGCGGACGTGGAGAGGAGAGAGGAGGGT
AGGTGGAGATGAGAGGAAGGGCGGGGTGTAGAGAGTGCGAGAGAAGTGTGAGAGAAGTGTGAGAG
AAGTGTAGGGGGAGGATGAGAGGAGTATGAGAGGAGTTTGAGAGGCGTATGAGAGGATGAGGATA
GGAGAGATCAGTTAGCGGAGGATAGGTGGGAGATGTGCAGGTTTTGGTTAGGCGGTGGTGTGTGT
AGAGTGTTGGGAGGATCAGTGCGCGATCGGTGTACGTGTACTCCCCGCACATTCTTACCGTTTCA
GCACCGGGTAGTCTTGACGATAACCCGGTGTAAGCCGGAAGGAAG
Right flanking sequence: Indices 17929 -- 18428
GTAGGATGAGCCCGGCTGCGTGGGTACGACGTGTCGGCAGCGTCGGGCCGTCACCCGGCACGGCG
TAGCTGTGCCTGGCCCAGCGTCGTCGTGTAGGGCGGTGCCGAGTCGGGCGTTGTTACGTGGCTAC
GTGGCGGAGAGGGTTCCCAACCGTCGGGACAGCCACTGGCAACGCCCGGCGAGGGTGGCTCGTGG
CCCCACGTCGCTGGCGACCGTTGGGCAGGTGCGTCTCCGGTGCCAGACATCCTGGGCGAATGGGG
CAATGTAGGAGGCGGAGCCGGAAGGGTGGCTAAAGGAGAGCCGGGGTGGCTCAAGGGAGAGACGT
TTGCCTACGTTTGCCCCCTAAAGTGTTTTACCAGCCTTGGCCATAGTTGCTCTGGCCCGATAATG
CTCGTCCGCGAACAATAGAAGGGATGGAGGTTCAGCCGTTCAGGGTTCAGGTGTGGCTGGAAATG
GTGTAATTTTGGGGTAGGTGTGTGGTGGGGTAGGAGAACTGGTAG
Found at i:18788 original size:36 final size:36
Alignment explanation
Indices: 18743--18844 Score: 136
Period size: 36 Copynumber: 2.8 Consensus size: 36
18733 TGCCACTACC
18743 GGCTCAAACTGCCATCCCCGTGACTGTCTCTAACCT
1 GGCTCAAACTGCCATCCCCGTGACTGTCTCTAACCT
* * *
18779 GGTTCAAACTGCCA-CCTCCGAGACTGTCTCTATCCT
1 GGCTCAAACTGCCATCC-CCGTGACTGTCTCTAACCT
*
18815 GGCTCAAACTGCC-TCCCCCCTGACTGTCTC
1 GGCTCAAACTGCCAT-CCCCGTGACTGTCTC
18845 GGCCCAAACT
Statistics
Matches: 57, Mismatches: 6, Indels: 6
0.83 0.09 0.09
Matches are distributed among these distances:
35 2 0.04
36 53 0.93
37 2 0.04
ACGTcount: A:0.18, C:0.40, G:0.17, T:0.25
Consensus pattern (36 bp):
GGCTCAAACTGCCATCCCCGTGACTGTCTCTAACCT
Left flanking sequence: Indices 18243 -- 18742
GGGAGAGACGTTTGCCTACGTTTGCCCCCTAAAGTGTTTTACCAGCCTTGGCCATAGTTGCTCTG
GCCCGATAATGCTCGTCCGCGAACAATAGAAGGGATGGAGGTTCAGCCGTTCAGGGTTCAGGTGT
GGCTGGAAATGGTGTAATTTTGGGGTAGGTGTGTGGTGGGGTAGGAGAACTGGTAGGGTTTCACG
GTAGATGGCTGTGAAAGATAGAGCTTGCTAAACTACGTAGAGACCGCTTGTTTTATGCAATCACC
GTCTTTATTATTGCCTTCATTATCGTCTTTATCATCTCCATTGTACTTTGAAACATAGATCTTCT
TGCTAGCTAACACAAATCCCCTCATTCGCCATTAATTCGTTGTTACTTGCCATTAATCGCTATTA
CTCTTGCATAAATCGTTATAGCTCTTGTAGTCGTTGTTACTCTATCTCTATGCCGCAAAGCCAGC
TTTGCATTGGCACTAGGCCTTTTAACCCCTGTGACTGCCACTACC
Right flanking sequence: Indices 18845 -- 19344
GGCCCAAACTGCCTCCGTCTCGAGCCAACACCCCCATCGGAATGTCCTCGCCGGGGAGCGAGCCG
TGTCTCGTCCCCACCTCGGCAACCCCCACGGTGGCCTGCTCCTTGTAGGGCGGCACGTACACGGG
TGGCGGCTCTTCGGGGTGCTTGGTGTACACGGGCAACGCCTCGTCCACCTCCTGGTGGGGCCTGT
GCACCGGAGGCGGGTCTAGCGGCGAGAAACTGATGGGGAACCGGGTTCGGGGGTTCGGTAGGGCG
TCTACCTGGGCCGTGAGCCGCCTCTGCCGTCTCAGGCGAAGAACGATCAACATGAAAATGACCAC
AAGCAACACGGGGATCACCACGAACCCCGTGTAGGTGTTGTCCCGTTTCTCGAGACGTCGTGGTA
GAATCATGGTGTATCCAGGGGTTGGAGCCACATGACCCGATCCACTATTGCTTTTGGGGACTCAT
AACCACAACCGCTCTATGGGGAAAATAGTGGGGTAGGATGGTCTG
Found at i:19437 original size:28 final size:29
Alignment explanation
Indices: 19396--19478 Score: 93
Period size: 26 Copynumber: 3.0 Consensus size: 29
19386 CTCAATATAC
* *
19396 GAGCGGTGACAGGTTGCAATGAGTGGTGG
1 GAGCGATGACAGGTCGCAATGAGTGGTGG
* *
19425 GAGC-ATGACAGGTCACAA--CG-GGTGG
1 GAGCGATGACAGGTCGCAATGAGTGGTGG
*
19450 GAGCGGTGACAGGTCGCAATGAGTGGTGG
1 GAGCGATGACAGGTCGCAATGAGTGGTGG
19479 TCGGCTATAC
Statistics
Matches: 43, Mismatches: 7, Indels: 8
0.74 0.12 0.14
Matches are distributed among these distances:
25 9 0.21
26 13 0.30
28 12 0.28
29 9 0.21
ACGTcount: A:0.23, C:0.14, G:0.46, T:0.17
Consensus pattern (29 bp):
GAGCGATGACAGGTCGCAATGAGTGGTGG
Left flanking sequence: Indices 18896 -- 19395
CGGGGAGCGAGCCGTGTCTCGTCCCCACCTCGGCAACCCCCACGGTGGCCTGCTCCTTGTAGGGC
GGCACGTACACGGGTGGCGGCTCTTCGGGGTGCTTGGTGTACACGGGCAACGCCTCGTCCACCTC
CTGGTGGGGCCTGTGCACCGGAGGCGGGTCTAGCGGCGAGAAACTGATGGGGAACCGGGTTCGGG
GGTTCGGTAGGGCGTCTACCTGGGCCGTGAGCCGCCTCTGCCGTCTCAGGCGAAGAACGATCAAC
ATGAAAATGACCACAAGCAACACGGGGATCACCACGAACCCCGTGTAGGTGTTGTCCCGTTTCTC
GAGACGTCGTGGTAGAATCATGGTGTATCCAGGGGTTGGAGCCACATGACCCGATCCACTATTGC
TTTTGGGGACTCATAACCACAACCGCTCTATGGGGAAAATAGTGGGGTAGGATGGTCTGCGGGCC
TGACGGACTGGACAAGGGGCCGTGTGCATGGGACACTCAATATAC
Right flanking sequence: Indices 19479 -- 19978
TCGGCTATACGGAATTGAAGGTCTTTAAAGGAGTACTGTTTTACACACTATTGATAGCGTATTCA
GGTTGATGTCGTCGTTGCCGTCGCCACTCCTGGGTTACCAAGCACCTGGGTGACTGGAACGTGTT
CAGGCATTCCTTTTCGGTTATGCACGTAATATATCTGGCTCCTTCCCAAACTCCGGTGGAAATTC
CCTCGTAAACACCAATACGAGGTAATTTAAATAGCTTTGGTTCTCTCAAGACCCGTAACCATGCG
TTTGTTGTATCTCCTACCCCTTGTCGCCGCCAACGGCTTTTACAAAGAGAAAGACGGCACCACCT
ACATCACCGCCAACGCCGACAAGTTTCTGAAGCTCGCGCTGTCGTTGGGAGTCACCAGAACCGAG
TTCAGAAACATCTACGCCTACCTCTACGAGTCGTTCCTGGGGCTGATCCCATTGGAGACGTTTGA
GGCTTTCCAGACCAACGCTGTCTTGGCAGCCTCGGTCGAAGGCAA
Found at i:20603 original size:20 final size:20
Alignment explanation
Indices: 20578--20634 Score: 98
Period size: 20 Copynumber: 2.9 Consensus size: 20
20568 CATAAATAGC
20578 CCAGTTTTCACCACC-AGTCA
1 CCAGTTTTCACCACCGA-TCA
20598 CCAGTTTTCACCACCGATCA
1 CCAGTTTTCACCACCGATCA
20618 CCAGTTTTCACCACCGA
1 CCAGTTTTCACCACCGA
20635 CAAGAAACAT
Statistics
Matches: 36, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
20 35 0.97
21 1 0.03
ACGTcount: A:0.25, C:0.40, G:0.11, T:0.25
Consensus pattern (20 bp):
CCAGTTTTCACCACCGATCA
Left flanking sequence: Indices 20078 -- 20577
GAACTAGACCCAAGCAATAAGACTACTTATCCATTTTGTTCATTCTGTTTACTATGCCACCACGC
TCGTATTGTCACGGTGGTCACCCGTGCATTGATGCTCGTATTGGCATTACTACGACGGGCCGCGA
CGGGCCTCGTGACCTTTGCTCAGCCCCAGGGGCATAGTCCGGAGTGACAATCGCCGTTGAGATTG
TAACTGGTGCCCATCTGTTGACAACCACGATAGATTCTGGCAACGGTGGTCACGGTCGGATCGGG
GCTTGCAGATACGGGGTTTAGCCAGGGGTGACCATACGAACCACAGATGAAACGACAGATGGAAG
ATCCACAATTGCTGTAGATTGCTAGACTCCTGGCTAGCCAGCTCTAACTGGACACTCGCCTACTC
TCGCTCAGCTTCCTTCTCTACCCTCCTTCTATCTACAATCCCCAGCTTATCTGGTCGTCTTGGCA
GCCAGGGCTAGGCACCGCAGCCAGGGGTAGTGTGTCATAAATAGC
Right flanking sequence: Indices 20635 -- 21134
CAAGAAACATGCACTTCTCTCCCTTTCTTCTTGCTTTAGCCGTCGCCGAGATCTACAACGTCGAG
GACGGGACCACCTACATCACCGTGGAGCCCGACAAGTTTGCGGACGACGCGGAGGCCGAGGGGTT
CACCTACAACAACATCGGGCTCATGTACCAGATGCTCTACGACTCGTTCCTGGGGCTGATTCCCC
TCGAAACGTTACTCGAGATCCAAACGAACACGGCGATGATTGCCTCGCTCGACCTGGAGTTTGAA
GACTTCACAAAGACCAAGACCGACAGCGGAGGTGCCCCCACCATGGGCTACGCGTACGGCGCAGT
CATTGCAGGCCTCGGGTTGTTTCTTTTGTAATTGTCTATAAGAATAGATGAATTGACCGAATACG
AAGGATCAAGCGGTATAAATGGGGCCGAATTCAAGCGAATACGACCACTTACACTTTTAATGGGT
TTGTTCTTAGTTCAGCTTACCGTGTTTCTTTTCCAGTTTGCACCC
Found at i:21894 original size:14 final size:14
Alignment explanation
Indices: 21875--21902 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
21865 GTGAGCAACC
21875 CATTGTGTCGTAGA
1 CATTGTGTCGTAGA
21889 CATTGTGTCGTAGA
1 CATTGTGTCGTAGA
21903 GTCACAGTGG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.21, C:0.14, G:0.29, T:0.36
Consensus pattern (14 bp):
CATTGTGTCGTAGA
Left flanking sequence: Indices 21375 -- 21874
ACCCACACAGGCGGCGGTGAGGTGATGGGTGTCACCGGAGCGGTTGTCATTGGCCTCAGTTTGTT
TCTTTTGTGATCTGTGGTGGAGGACCTTTTATATGTGGAATGTAACAATACACAATAGAGCGGCG
CGTGACACTCGTTCATTCTTGGGCGATGCTTTTAATTGTTCCGAAACCTCGTTTCTGGGTTATTC
AGCCTTTCACCGGCCTAAGCCTTTTGTAGTAATATTCGTCGCAACTTTGATCGGTCTAGATACGA
GGTACAGGGGCAAAACGACGAACGTTCATGGTACCCAAGGTGAAACAGAGCTCTGAAAGAGCGGT
GGGGGCGTTAGTAGTGGCCGGGCTTGCCTTGTTGACCTACGTGATGATCAGGTGTCTCCGGTTGG
ACTCAATCTCTCTGGGCTACCTCGAGAGCAAGCCAGGCAGTGGATAAAAGCATGGTTAAGTCGAA
CGATCTGGGCTGGTCAGCATCGCATTTCTACTGCGGTGAGCAACC
Right flanking sequence: Indices 21903 -- 22402
GTCACAGTGGCACGTCACTACTGAAATTAGGGGAAAGATACATTTTGTTACGATCTGGGAAATTT
CACGCTATGCTGACACAAAACCTGAAGTTGTTGCATCGCATACTCGTATGTCTAGCAACCCCTTC
CCCCTTCCCTCTACCCAATCCCTTACCACCTTAACCACTTTTGCACCATGCTTCCAAAAATAGCC
TCGATTGCTCTCGCGTGAGTACCCCACATTTACCACAAGCAGCCGGTGACTAACCCTTAGTAACT
GTCACCATTACAAACATTACTAACTGCGTGACAGTCCCCTTACTAACGGCCACGTCTCCGAACTG
AGCCACTCCGAAGCAAGGCACCGAATTAAGGTTTAAACGTAAACAATCGTATGGCAAGTTCAAAC
GACGTGTTGCTCCACTAAACTAGAACCACCCCTCTATCACCGTTCACTTCCCAACCACGCCTCCC
CGTCCACTACCCAACCACGCTCTCCACCAGTGTCCACTACGCTAC
Found at i:22370 original size:25 final size:26
Alignment explanation
Indices: 22332--22382 Score: 77
Period size: 25 Copynumber: 2.0 Consensus size: 26
22322 CCCTCTATCA
* *
22332 CCGTTCACTTCCCAACCACGC-CTCC
1 CCGTCCACTACCCAACCACGCTCTCC
22357 CCGTCCACTACCCAACCACGCTCTCC
1 CCGTCCACTACCCAACCACGCTCTCC
22383 ACCAGTGTCC
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 19 0.83
26 4 0.17
ACGTcount: A:0.18, C:0.57, G:0.08, T:0.18
Consensus pattern (26 bp):
CCGTCCACTACCCAACCACGCTCTCC
Left flanking sequence: Indices 21832 -- 22331
ATCTGGGCTGGTCAGCATCGCATTTCTACTGCGGTGAGCAACCCATTGTGTCGTAGACATTGTGT
CGTAGAGTCACAGTGGCACGTCACTACTGAAATTAGGGGAAAGATACATTTTGTTACGATCTGGG
AAATTTCACGCTATGCTGACACAAAACCTGAAGTTGTTGCATCGCATACTCGTATGTCTAGCAAC
CCCTTCCCCCTTCCCTCTACCCAATCCCTTACCACCTTAACCACTTTTGCACCATGCTTCCAAAA
ATAGCCTCGATTGCTCTCGCGTGAGTACCCCACATTTACCACAAGCAGCCGGTGACTAACCCTTA
GTAACTGTCACCATTACAAACATTACTAACTGCGTGACAGTCCCCTTACTAACGGCCACGTCTCC
GAACTGAGCCACTCCGAAGCAAGGCACCGAATTAAGGTTTAAACGTAAACAATCGTATGGCAAGT
TCAAACGACGTGTTGCTCCACTAAACTAGAACCACCCCTCTATCA
Right flanking sequence: Indices 22383 -- 22882
ACCAGTGTCCACTACGCTACCCCACTCGGCAATTGCATTGTCGAATCACCCACCTGAGTCTTCCC
CTCTTTTACCCCCACCGTGCCCCCCACCACCAGCCATCGCGTAAACACAGCCACCACGACCATCC
ACCACATACCACCAAAACACCACCAAAACACCACTAACCAATTGATCTATCAAAACAAACTTTTC
ATTACCTCTATAAATGCAATTACCAGCACTCGTAGCCGCCGTCAACCACAAGATTGTGGCCTGTA
GTGTAACTGGAACCAGACTCGGAAGCCAAGTACAAGATCGAGCCGACAAACTCCTTGGGCTCGGC
CATGCGCTGCTGGGGGATTTTCAGCTCCCACGCCTCCTTCATCTCGGCGTGGGCTCCGATAACGT
TCTTGGTCAACGGAGTCAAAATGTACCCGGGAGACAACGTGTTGACTCGAATGTTGTATTTGGCC
CACTCACAGGCAAGCGACCGTGCCAAATGAATGACACCGGCCTTG
Found at i:22536 original size:11 final size:11
Alignment explanation
Indices: 22520--22546 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
22510 TCCACCACAT
22520 ACCACCAAAAC
1 ACCACCAAAAC
22531 ACCACCAAAAC
1 ACCACCAAAAC
22542 ACCAC
1 ACCAC
22547 TAACCAATTG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.52, C:0.48, G:0.00, T:0.00
Consensus pattern (11 bp):
ACCACCAAAAC
Left flanking sequence: Indices 22020 -- 22519
TAGCAACCCCTTCCCCCTTCCCTCTACCCAATCCCTTACCACCTTAACCACTTTTGCACCATGCT
TCCAAAAATAGCCTCGATTGCTCTCGCGTGAGTACCCCACATTTACCACAAGCAGCCGGTGACTA
ACCCTTAGTAACTGTCACCATTACAAACATTACTAACTGCGTGACAGTCCCCTTACTAACGGCCA
CGTCTCCGAACTGAGCCACTCCGAAGCAAGGCACCGAATTAAGGTTTAAACGTAAACAATCGTAT
GGCAAGTTCAAACGACGTGTTGCTCCACTAAACTAGAACCACCCCTCTATCACCGTTCACTTCCC
AACCACGCCTCCCCGTCCACTACCCAACCACGCTCTCCACCAGTGTCCACTACGCTACCCCACTC
GGCAATTGCATTGTCGAATCACCCACCTGAGTCTTCCCCTCTTTTACCCCCACCGTGCCCCCCAC
CACCAGCCATCGCGTAAACACAGCCACCACGACCATCCACCACAT
Right flanking sequence: Indices 22547 -- 23046
TAACCAATTGATCTATCAAAACAAACTTTTCATTACCTCTATAAATGCAATTACCAGCACTCGTA
GCCGCCGTCAACCACAAGATTGTGGCCTGTAGTGTAACTGGAACCAGACTCGGAAGCCAAGTACA
AGATCGAGCCGACAAACTCCTTGGGCTCGGCCATGCGCTGCTGGGGGATTTTCAGCTCCCACGCC
TCCTTCATCTCGGCGTGGGCTCCGATAACGTTCTTGGTCAACGGAGTCAAAATGTACCCGGGAGA
CAACGTGTTGACTCGAATGTTGTATTTGGCCCACTCACAGGCAAGCGACCGTGCCAAATGAATGA
CACCGGCCTTGGACATGTTGTACATCGCCTGGGGCTGGGGGTCGTTGACAATGGTACCACTCATG
GAACCAATCAAAATGATCAGGCCGGGCAAGTTGTTGGCGATAAGCGCCCGGGCAAACAGCTGGGA
CACGTACAAAGCACCCAACCCGTTCACCTTCATAATCAGCTCAGC
Found at i:24783 original size:43 final size:44
Alignment explanation
Indices: 24699--24787 Score: 144
Period size: 43 Copynumber: 2.0 Consensus size: 44
24689 ACACACCTCA
* * *
24699 TCTCTAATCCGGTTGCCGGTTTTATCACGCATCGCTGCTGCTTT
1 TCTCTAACCCGGTTGCCGGTTTAATCACGCATCGCTACTGCTTT
24743 TCTCTAACCCGGTTGCCGG-TTAATCACGCATCGCTACTGCTTT
1 TCTCTAACCCGGTTGCCGGTTTAATCACGCATCGCTACTGCTTT
24786 TC
1 TC
24788 CTTTTCTTCT
Statistics
Matches: 42, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
43 24 0.57
44 18 0.43
ACGTcount: A:0.13, C:0.31, G:0.19, T:0.36
Consensus pattern (44 bp):
TCTCTAACCCGGTTGCCGGTTTAATCACGCATCGCTACTGCTTT
Left flanking sequence: Indices 24199 -- 24698
TCTAGACCCCCTCGTTCGCGGGCGCCACCCGTTACCTGTCATCGCGGCCTCAACGGTTATGCCGT
CACCGTGCGTTTTGACACTAGACGCTCTCTGCACCGGTAGCCGGGCTCGATGCGTGTGAAACGCG
AACGAACAACGCGGGCCTCGGTGTGGAAGAGCCTGTGATAGTGTGGGGGACATCTGTCTGGGGGT
TGTTACAAAATGTGCTTTCGTGCTGTATGTATTGGAGATCTACCGGTGAAATTGCAACACAACAC
TAAACCACAAGCGTCAGCGGCATCGCGGGCACAATACCAAGAAAACTGCTGGCCAGCGATGGTCT
ATTCCACCGGATAAACTTTTATGCACGACCATGCCTGATGACATAGTGCCTGGATCGGAACTGAA
AAACGGTCGACGCAGAGATGAGATCGAGGCGGAGCCCGTACGGTGATGTAACCGTGGAGCGCTTA
CATTAGTGGTCTATGCTGTTTGTACCCGGTTCTATACACACCTCA
Right flanking sequence: Indices 24788 -- 25287
CTTTTCTTCTCCTGCTCTTTCCTGAAAGAACCGGGACATGGGCTTGCAGTCGGGGGCCAACGTCA
AGTTAATCACCTGTAGAGCGTCTGTCGAGCTCATCTCGTCGTTGCCGTTGACGTACTTGAACAGC
TCGGCCCGGAACCCCAGCGCTGGGGTGTCAGGAAGGCTCTCCTTGACCAAGTACTGGTTCAAGAG
ATCGATGAGCACTGGCGAGTCAAAATTGTAGTCGTACAAGTCAATCTTGTCGCCCCCCTCGGCCT
TGGACGACTCGGTGAGGTGGATGCGGTCGTCAAAGTAGCCCAAACAGTGCTCCAACCGCGGGAAC
AGCGCCTTGGTCGCCCCCATGGCCTCCACCACGTACTTGCGGTCCATCAACACCGCGTAGACAAG
GTCGTAGTTTATCGAGAGCTGGCGCTCGGGCTCGACCACCCGGCTGAACCGCGGCTCCAACACCT
GGTCAAACACCGCGAGAATCTCCTCGGCCACCGCCAGCACCGTGC
Found at i:27332 original size:8 final size:8
Alignment explanation
Indices: 27319--27349 Score: 53
Period size: 8 Copynumber: 3.8 Consensus size: 8
27309 CGAGAGTAGC
27319 AGGGAAGA
1 AGGGAAGA
27327 AGGGAAGA
1 AGGGAAGA
27335 AGGGAAGA
1 AGGGAAGA
27343 AGCGGAA
1 AG-GGAA
27350 AGCGGGAAGA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
8 18 0.82
9 4 0.18
ACGTcount: A:0.48, C:0.03, G:0.48, T:0.00
Consensus pattern (8 bp):
AGGGAAGA
Left flanking sequence: Indices 26819 -- 27318
CTCGTCGTCGATGTCCTCAAACGGGGCCCGTGGAGTGTACTTGGCGTCTTCCTCGGGCGCCTGGG
TGGCACCGGTGCCCATGGATGTGATGTCATCGCCGTCATCCTCGAGATCAGCCTCCGGTTCGGAG
GTTTCGTTGTCTTTTTCGGAGTTTTTCGGGTCTGGGCCGTCTGAGCGGGTGTTGTAGCGGATGGC
GTCGTTAAAAAAGGTGATTCCATACCGTAGCATGTCGGTGAACACCTCGCGATTGTCGCTGGCCC
CGTCGGTCATCATCTGGTCGAGGTTGGCCACCATGGTCTGGCGGAGGGCGTCCTCCACCACGGGG
GTAGCAAAGAGCACTTTGTAGAGGCCCTCGTCCTTGGCGTAGCTCGGGTCGAACAATTGGGCGTA
CACCAGTGCCATGGGTGCGTGGGTGGGATGGGATGGAGTAGGGTTGGTGGGACAGGTGGGTGTAT
GTACGCGTTTTTCGCAGGCCATGGGTGGGATGGGACGAGAGTAGC
Right flanking sequence: Indices 27350 -- 27849
AGCGGGAAGAAGTGTGGTTGTTGAGTGTTTATGGGTGTTGGTTTGAGAGTGTCGAGTGTGTTTCG
TGGGGTTACTGTATTTTCATGTTGATCTAGGGTTGTGGCTTGGTGTGGATTAGGCATGGTCTTGG
CGTGGCTTTGAAACTGGTAAATACGAGAGGTGAAACAAACAGAGGTGGAACAAACAGAATCGGGG
GAGAAGAACGCGTCTGTGCTTGTGTTTGGGGGAGGAAGTGGGTTTGGTTCTACGAGAGAGTTTGT
AACAGCTGTGGCTGTGTAGCGAAGGGGAAGGTCGGTTCGGTGAGCCGAGAGATTACAGGAGATGA
GCTCGAAGTGTGTTGTTGCACGAGTAGGGGTAAGGTGATAGGTTACAACGCGTTGGTCGTATAGT
TTACCCCTATGTTTACTTTTTGGTTCTCTATATTTAACACATATTTGTAAAATTTGTTAAAAACC
AGTGAATCTGAGAACGACACCGGTTATGTTTGCCAGATCGGATAC
Found at i:27525 original size:15 final size:15
Alignment explanation
Indices: 27505--27537 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
27495 GGTAAATACG
27505 AGAGGTGAAACAAAC
1 AGAGGTGAAACAAAC
*
27520 AGAGGTGGAACAAAC
1 AGAGGTGAAACAAAC
27535 AGA
1 AGA
27538 ATCGGGGGAG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.52, C:0.12, G:0.30, T:0.06
Consensus pattern (15 bp):
AGAGGTGAAACAAAC
Left flanking sequence: Indices 27005 -- 27504
GCGGATGGCGTCGTTAAAAAAGGTGATTCCATACCGTAGCATGTCGGTGAACACCTCGCGATTGT
CGCTGGCCCCGTCGGTCATCATCTGGTCGAGGTTGGCCACCATGGTCTGGCGGAGGGCGTCCTCC
ACCACGGGGGTAGCAAAGAGCACTTTGTAGAGGCCCTCGTCCTTGGCGTAGCTCGGGTCGAACAA
TTGGGCGTACACCAGTGCCATGGGTGCGTGGGTGGGATGGGATGGAGTAGGGTTGGTGGGACAGG
TGGGTGTATGTACGCGTTTTTCGCAGGCCATGGGTGGGATGGGACGAGAGTAGCAGGGAAGAAGG
GAAGAAGGGAAGAAGCGGAAAGCGGGAAGAAGTGTGGTTGTTGAGTGTTTATGGGTGTTGGTTTG
AGAGTGTCGAGTGTGTTTCGTGGGGTTACTGTATTTTCATGTTGATCTAGGGTTGTGGCTTGGTG
TGGATTAGGCATGGTCTTGGCGTGGCTTTGAAACTGGTAAATACG
Right flanking sequence: Indices 27538 -- 28037
ATCGGGGGAGAAGAACGCGTCTGTGCTTGTGTTTGGGGGAGGAAGTGGGTTTGGTTCTACGAGAG
AGTTTGTAACAGCTGTGGCTGTGTAGCGAAGGGGAAGGTCGGTTCGGTGAGCCGAGAGATTACAG
GAGATGAGCTCGAAGTGTGTTGTTGCACGAGTAGGGGTAAGGTGATAGGTTACAACGCGTTGGTC
GTATAGTTTACCCCTATGTTTACTTTTTGGTTCTCTATATTTAACACATATTTGTAAAATTTGTT
AAAAACCAGTGAATCTGAGAACGACACCGGTTATGTTTGCCAGATCGGATACATATAAATACTCG
TGACAATCAGCCCCTTCCAAAGCGTCACCACTATCCGCTAACATGTCTAATTGGCAGTTTATAAA
CCTCTAAAAGTGGTTGCAATGGTTGACGTCATTGGAACTACGCTGGATAGGCAGTAACTACCTGT
CAAACGCGATGTATCTCTTTATCTCACATCCACTCCCTGTTCAGC
Found at i:41062 original size:13 final size:13
Alignment explanation
Indices: 41044--41093 Score: 64
Period size: 13 Copynumber: 3.8 Consensus size: 13
41034 TAAGCTACAA
41044 TACCAAATGTTAG
1 TACCAAATGTTAG
* *
41057 TACCAATTGTTAA
1 TACCAAATGTTAG
*
41070 TACCAATTGTTAG
1 TACCAAATGTTAG
*
41083 TACCACATGTT
1 TACCAAATGTT
41094 TGCTAAAGTA
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 32 1.00
ACGTcount: A:0.34, C:0.18, G:0.12, T:0.36
Consensus pattern (13 bp):
TACCAAATGTTAG
Left flanking sequence: Indices 40544 -- 41043
GGGTGCGACTCGGTTGTGGGGTACCCGGGGAAACTCGGGAGGGGCGAGGCGGCCAGGGACACTTG
GCAGAGAGGGGTGGCGTTGGGCTGGATGGGGGCTGGATGGAAGCTGGTTTACTCGGTTTGTAGTA
GAGCTGCGTGGCTTCTATTTAGTACTTTTACCAGTTGTGGTTTGGTGTTTCGAGTCGCTTTCGCA
TTTAGGTTTATTAGTTTGACCCGGGATTATCGGTCGCGATAGAGGCAACGGCCAAGCCAAAGGAA
ACAAAAAAGTCCGACGAGGGTCGTTCCTACCGGATGATCCGACGAAAGTCGCGCCAGACAAGCCG
AGACGACCAAATGGCCCGATTTGGTAACGCCTCGTACCATCCGGATGGGGTCAGATTGAGTCAGG
CCTCAGTCCCAGGGTCGAGACTGTTCACAAGAGTTCTAAATTTACCTTGTGAAGTCTGTGTTATG
TAATCATCAGACAGTGTCTAATCTGGGTCTTGTGATAAGCTACAA
Right flanking sequence: Indices 41094 -- 41593
TGCTAAAGTAGTCTCAACCAGTGTACTGGTCTACCGTGTCTCGTCGTATTAGTCATTATGTATCG
CCCTGCGATTCTTACAGCTCGTGGGCTGGTTCTGTTCGTTCTTCTCTCAACTAGTCTTCGTCGAT
GCTCACTGAAAGCAGGCCCGTCGAGCTCCGAGAGCTCTGCGGGCTAGCTGGCTCCTTCTTCGGGC
TCTGATACCACCGGAGCACATGGGCTGGCTGCGCGTACCGCGGTCGGTACTGGCTATTCACCGAC
GGCTCCAGGCGCAACGACACCGCCCGCGGCCGGTCAAAGTGGAGGTCATGCCTGTAGGTGTTCAC
CTGGGACTCCAGGGCCACCTGGATCATCGGAGGAGCCGTGAACTTGGGCGACGGAGGGCCCTCGG
GAGCCGTGACAAACAGGTCCGCGGGCGGCAGCCCAGCTTCGAGGTCCACCAACGGGGTGGTCAGG
CACCCCACCGAGGGCTGCAGAGCCACTGACGGGCGCGTCGACGCA
Found at i:43615 original size:17 final size:17
Alignment explanation
Indices: 43593--43626 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
43583 GGAATATTAG
43593 AGGAACTCC-GTTCGCGA
1 AGGAAC-CCAGTTCGCGA
43610 AGGAACCCAGTTCGCGA
1 AGGAACCCAGTTCGCGA
43627 GGTACCCACT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 2 0.12
17 14 0.88
ACGTcount: A:0.26, C:0.29, G:0.29, T:0.15
Consensus pattern (17 bp):
AGGAACCCAGTTCGCGA
Left flanking sequence: Indices 43093 -- 43592
TCTGTAGCAGCTTCTGGATCGGGTTATTTTTTCGGTGGTGCATGACCAGGCTACAGGGGGAGACG
TGGTGGGGAAGCTGAGGGGGGCTACCAGGGGCGGTGGAGAGCTGGGGGAAGGCGGAGGTGGGTGG
TTTTACTGTAGTGTGTAGGGTAGTGGGCTCTTTTTTTGTGTTGCTGCCGGGTCCCGTTCCAAAAA
TAGCCCGGTTGCTTCTTGCCTTCGCCACGGCTGATGCAGGGAATGTGACCAGTGGGACAATAGGG
TAGTGGGTGGAACAGACGGGCTGTTCTAGGTGGTTGCCAAGTGGGACAGCCAGGGGATCTGTGCA
GAGGTGGGGAAGAAGTACCCATAAAGGTGGAACCACCATGAGAACACGAATAGCTTACGAACTGA
TTAACGAGTTCCAGGTCAACCAATCACCGAACCAGTTTCAATTCCTCGCTTAGAGTAACCATGTG
GTTAAGCGCTAGAAGTAGGACTTCAACCAGCTCATGGAATATTAG
Right flanking sequence: Indices 43627 -- 44126
GGTACCCACTGCACGAATGGAGCTATTTCCCAAGATACCCATTTGAATGAATCCACTTCACAAAG
AAATCCACTTCACAAAGGAACCCACCTCCTAACAAACCCACCTCCCAACGAACCACCTCCCCACT
TCCCCACTTCCCGACTTCTACACTCTTCATATCATTACATTATTACTACACTCTATTCATACACT
CACCGTCTCTATAACGTGGCCACGCCTCCAAGGGCCAGCCCTAGTGGTGAGATTGGTAGGCTTGC
CGGCGCGGGTAGTCCTCGTACACACTGCGGCCCAGCGGCTGGCGCAGGTGGCCAGGACGGAACTC
GTCCAGCTGGTACTGGTTACCCTGGTTGTACCCCGCGTCGTACCCATTGGCATCGTCGTACGGGT
TGGCGTTGTAGTCGCCACCAGCGTAGCCATTGTCGGCCCCGTAGCCAGTGCCATTGCCAGCATTG
TACCCATTGTTGCCTTCATACCCATTGTTGTGCGCAGGGGGAGTA
Found at i:43698 original size:17 final size:17
Alignment explanation
Indices: 43676--43708 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
43666 CATTTGAATG
43676 AATCCACTTCACAAAGA
1 AATCCACTTCACAAAGA
43693 AATCCACTTCACAAAG
1 AATCCACTTCACAAAG
43709 GAACCCACCT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.45, C:0.30, G:0.06, T:0.18
Consensus pattern (17 bp):
AATCCACTTCACAAAGA
Left flanking sequence: Indices 43176 -- 43675
GGGCTACCAGGGGCGGTGGAGAGCTGGGGGAAGGCGGAGGTGGGTGGTTTTACTGTAGTGTGTAG
GGTAGTGGGCTCTTTTTTTGTGTTGCTGCCGGGTCCCGTTCCAAAAATAGCCCGGTTGCTTCTTG
CCTTCGCCACGGCTGATGCAGGGAATGTGACCAGTGGGACAATAGGGTAGTGGGTGGAACAGACG
GGCTGTTCTAGGTGGTTGCCAAGTGGGACAGCCAGGGGATCTGTGCAGAGGTGGGGAAGAAGTAC
CCATAAAGGTGGAACCACCATGAGAACACGAATAGCTTACGAACTGATTAACGAGTTCCAGGTCA
ACCAATCACCGAACCAGTTTCAATTCCTCGCTTAGAGTAACCATGTGGTTAAGCGCTAGAAGTAG
GACTTCAACCAGCTCATGGAATATTAGAGGAACTCCGTTCGCGAAGGAACCCAGTTCGCGAGGTA
CCCACTGCACGAATGGAGCTATTTCCCAAGATACCCATTTGAATG
Right flanking sequence: Indices 43709 -- 44208
GAACCCACCTCCTAACAAACCCACCTCCCAACGAACCACCTCCCCACTTCCCCACTTCCCGACTT
CTACACTCTTCATATCATTACATTATTACTACACTCTATTCATACACTCACCGTCTCTATAACGT
GGCCACGCCTCCAAGGGCCAGCCCTAGTGGTGAGATTGGTAGGCTTGCCGGCGCGGGTAGTCCTC
GTACACACTGCGGCCCAGCGGCTGGCGCAGGTGGCCAGGACGGAACTCGTCCAGCTGGTACTGGT
TACCCTGGTTGTACCCCGCGTCGTACCCATTGGCATCGTCGTACGGGTTGGCGTTGTAGTCGCCA
CCAGCGTAGCCATTGTCGGCCCCGTAGCCAGTGCCATTGCCAGCATTGTACCCATTGTTGCCTTC
ATACCCATTGTTGTGCGCAGGGGGAGTAGGCGGGGTCTCGTCGTCGTCCACAAAGTAGAACTTAC
CGTCGGGAGCCTGTTGCGAGTACACGCCCGGATACTCGGTGCGCA
Found at i:43716 original size:17 final size:17
Alignment explanation
Indices: 43679--43716 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
43669 TTGAATGAAT
*
43679 CCACTTCACAAAGAAAT
1 CCACTTCACAAAGAAAC
*
43696 CCACTTCACAAAGGAAC
1 CCACTTCACAAAGAAAC
43713 CCAC
1 CCAC
43717 CTCCTAACAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.42, C:0.37, G:0.08, T:0.13
Consensus pattern (17 bp):
CCACTTCACAAAGAAAC
Left flanking sequence: Indices 43179 -- 43678
CTACCAGGGGCGGTGGAGAGCTGGGGGAAGGCGGAGGTGGGTGGTTTTACTGTAGTGTGTAGGGT
AGTGGGCTCTTTTTTTGTGTTGCTGCCGGGTCCCGTTCCAAAAATAGCCCGGTTGCTTCTTGCCT
TCGCCACGGCTGATGCAGGGAATGTGACCAGTGGGACAATAGGGTAGTGGGTGGAACAGACGGGC
TGTTCTAGGTGGTTGCCAAGTGGGACAGCCAGGGGATCTGTGCAGAGGTGGGGAAGAAGTACCCA
TAAAGGTGGAACCACCATGAGAACACGAATAGCTTACGAACTGATTAACGAGTTCCAGGTCAACC
AATCACCGAACCAGTTTCAATTCCTCGCTTAGAGTAACCATGTGGTTAAGCGCTAGAAGTAGGAC
TTCAACCAGCTCATGGAATATTAGAGGAACTCCGTTCGCGAAGGAACCCAGTTCGCGAGGTACCC
ACTGCACGAATGGAGCTATTTCCCAAGATACCCATTTGAATGAAT
Right flanking sequence: Indices 43717 -- 44216
CTCCTAACAAACCCACCTCCCAACGAACCACCTCCCCACTTCCCCACTTCCCGACTTCTACACTC
TTCATATCATTACATTATTACTACACTCTATTCATACACTCACCGTCTCTATAACGTGGCCACGC
CTCCAAGGGCCAGCCCTAGTGGTGAGATTGGTAGGCTTGCCGGCGCGGGTAGTCCTCGTACACAC
TGCGGCCCAGCGGCTGGCGCAGGTGGCCAGGACGGAACTCGTCCAGCTGGTACTGGTTACCCTGG
TTGTACCCCGCGTCGTACCCATTGGCATCGTCGTACGGGTTGGCGTTGTAGTCGCCACCAGCGTA
GCCATTGTCGGCCCCGTAGCCAGTGCCATTGCCAGCATTGTACCCATTGTTGCCTTCATACCCAT
TGTTGTGCGCAGGGGGAGTAGGCGGGGTCTCGTCGTCGTCCACAAAGTAGAACTTACCGTCGGGA
GCCTGTTGCGAGTACACGCCCGGATACTCGGTGCGCACCACGGGG
Found at i:43749 original size:15 final size:16
Alignment explanation
Indices: 43710--43752 Score: 61
Period size: 16 Copynumber: 2.8 Consensus size: 16
43700 TTCACAAAGG
*
43710 AACCCACCTCCTAACA
1 AACCCACCTCCCAACA
*
43726 AACCCACCTCCCAACG
1 AACCCACCTCCCAACA
43742 AA-CCACCTCCC
1 AACCCACCTCCC
43753 CACTTCCCCA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
15 9 0.36
16 16 0.64
ACGTcount: A:0.33, C:0.56, G:0.02, T:0.09
Consensus pattern (16 bp):
AACCCACCTCCCAACA
Left flanking sequence: Indices 43210 -- 43709
CGGAGGTGGGTGGTTTTACTGTAGTGTGTAGGGTAGTGGGCTCTTTTTTTGTGTTGCTGCCGGGT
CCCGTTCCAAAAATAGCCCGGTTGCTTCTTGCCTTCGCCACGGCTGATGCAGGGAATGTGACCAG
TGGGACAATAGGGTAGTGGGTGGAACAGACGGGCTGTTCTAGGTGGTTGCCAAGTGGGACAGCCA
GGGGATCTGTGCAGAGGTGGGGAAGAAGTACCCATAAAGGTGGAACCACCATGAGAACACGAATA
GCTTACGAACTGATTAACGAGTTCCAGGTCAACCAATCACCGAACCAGTTTCAATTCCTCGCTTA
GAGTAACCATGTGGTTAAGCGCTAGAAGTAGGACTTCAACCAGCTCATGGAATATTAGAGGAACT
CCGTTCGCGAAGGAACCCAGTTCGCGAGGTACCCACTGCACGAATGGAGCTATTTCCCAAGATAC
CCATTTGAATGAATCCACTTCACAAAGAAATCCACTTCACAAAGG
Right flanking sequence: Indices 43753 -- 44252
CACTTCCCCACTTCCCGACTTCTACACTCTTCATATCATTACATTATTACTACACTCTATTCATA
CACTCACCGTCTCTATAACGTGGCCACGCCTCCAAGGGCCAGCCCTAGTGGTGAGATTGGTAGGC
TTGCCGGCGCGGGTAGTCCTCGTACACACTGCGGCCCAGCGGCTGGCGCAGGTGGCCAGGACGGA
ACTCGTCCAGCTGGTACTGGTTACCCTGGTTGTACCCCGCGTCGTACCCATTGGCATCGTCGTAC
GGGTTGGCGTTGTAGTCGCCACCAGCGTAGCCATTGTCGGCCCCGTAGCCAGTGCCATTGCCAGC
ATTGTACCCATTGTTGCCTTCATACCCATTGTTGTGCGCAGGGGGAGTAGGCGGGGTCTCGTCGT
CGTCCACAAAGTAGAACTTACCGTCGGGAGCCTGTTGCGAGTACACGCCCGGATACTCGGTGCGC
ACCACGGGGGCCCGGTTCAACGTCTCCATGTCCACCAGACTCAGC
Found at i:47302 original size:10 final size:10
Alignment explanation
Indices: 47283--47329 Score: 67
Period size: 10 Copynumber: 4.6 Consensus size: 10
47273 GAAGGGAAAG
47283 GAATGTGAGT
1 GAATGTGAGT
*
47293 GAATGCGAGT
1 GAATGTGAGT
*
47303 GAATGTAAGT
1 GAATGTGAGT
47313 GAATGTGAGT
1 GAATGTGAGT
47323 GGAATGT
1 -GAATGT
47330 ACGGTAGTGA
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
10 26 0.81
11 6 0.19
ACGTcount: A:0.32, C:0.02, G:0.38, T:0.28
Consensus pattern (10 bp):
GAATGTGAGT
Left flanking sequence: Indices 46783 -- 47282
CGGAACGGTCGGGACGACTGCAAAACAGTTGGCTGAGTGTACTTACGTTTGGCTCGCCACGGTTG
CGAACGCGCAGTGGGTGCCGTGTTTCAGACGCATGGCTGACGAGTAGGAGCACCGGTTGCTGGCT
CGGGCACGCTCGGGCGATCTAATTTTAGCTGCATTGGCGAGCTTCGGGGGGAGATCAGGTACGCG
AGGGAACAGAAGAGCGACGAAACGAGGGCCCTCGTCTCGTTGTCGTTGGTTCTGGCCTTATGTTC
CGCCAAGATCGCAATGCCCCGCGGGTGCCCCGCGTACACCACCTGCACACGGCCGTGTCGTCACC
GTTGTGGTTGCTCGAGTGAGCAACTTTGGGCGGTGATCCGACAATGGCGATCGGAGCACGGCGCT
AGCGTAGGGTGGGCGGTGGTCGAGATACGTGGGTTGGGGTGGTCGTTTCTTTTGGCGGCAAAGGA
ACGAGGGGACGAGGATGTGTGACAAGAATGTGAAAGAAGGGAAAG
Right flanking sequence: Indices 47330 -- 47829
ACGGTAGTGACAGTAATGACGGTAGTGACAGGTAACACTGGTGGCCCAACGTGGCAAATCCTGTG
AACTGACGATGAAACATGTGGAAATAACTGTCGGAATGCGCCGTATCCTGTGAATCAATGATTCG
TTTTGATACACGTACCCCGCGTGTGCCCCACTTCGAACCTCTAAACCACTACGAACTTCTTCACA
GTATCCTCGACTATTATCACCACAAACTTCACACCCTTCACACTACCCCCACCCCACTACCCCCC
ACAAACCTCTGGCAAAACCTTCAATAAATAAATAATAATAAATAGAATAAATAGTCATTAGTTGT
TGGGGCCCTTAAGTTTGTTTGCGCGCTTCTTCATTGCCTCGCTGAACCCCAACGCCACTGGCCAC
ACCGGGGCATCGGCCAAAATGCGGATGCCCAAGTACAACAGCTTCACCAGCAACTGCACCAGCTT
CACCTCTTGGCTGATCTCGGTGGACAACTGGTCGGCGTCGGCGTC
Found at i:47364 original size:19 final size:19
Alignment explanation
Indices: 47325--47360 Score: 65
Period size: 18 Copynumber: 1.9 Consensus size: 19
47315 ATGTGAGTGG
47325 AATGTACGGTAGTGACAGT
1 AATGTACGGTAGTGACAGT
47344 AATG-ACGGTAGTGACAG
1 AATGTACGGTAGTGACAG
47361 GTAACACTGG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 13 0.76
19 4 0.24
ACGTcount: A:0.33, C:0.11, G:0.33, T:0.22
Consensus pattern (19 bp):
AATGTACGGTAGTGACAGT
Left flanking sequence: Indices 46825 -- 47324
TTACGTTTGGCTCGCCACGGTTGCGAACGCGCAGTGGGTGCCGTGTTTCAGACGCATGGCTGACG
AGTAGGAGCACCGGTTGCTGGCTCGGGCACGCTCGGGCGATCTAATTTTAGCTGCATTGGCGAGC
TTCGGGGGGAGATCAGGTACGCGAGGGAACAGAAGAGCGACGAAACGAGGGCCCTCGTCTCGTTG
TCGTTGGTTCTGGCCTTATGTTCCGCCAAGATCGCAATGCCCCGCGGGTGCCCCGCGTACACCAC
CTGCACACGGCCGTGTCGTCACCGTTGTGGTTGCTCGAGTGAGCAACTTTGGGCGGTGATCCGAC
AATGGCGATCGGAGCACGGCGCTAGCGTAGGGTGGGCGGTGGTCGAGATACGTGGGTTGGGGTGG
TCGTTTCTTTTGGCGGCAAAGGAACGAGGGGACGAGGATGTGTGACAAGAATGTGAAAGAAGGGA
AAGGAATGTGAGTGAATGCGAGTGAATGTAAGTGAATGTGAGTGG
Right flanking sequence: Indices 47361 -- 47860
GTAACACTGGTGGCCCAACGTGGCAAATCCTGTGAACTGACGATGAAACATGTGGAAATAACTGT
CGGAATGCGCCGTATCCTGTGAATCAATGATTCGTTTTGATACACGTACCCCGCGTGTGCCCCAC
TTCGAACCTCTAAACCACTACGAACTTCTTCACAGTATCCTCGACTATTATCACCACAAACTTCA
CACCCTTCACACTACCCCCACCCCACTACCCCCCACAAACCTCTGGCAAAACCTTCAATAAATAA
ATAATAATAAATAGAATAAATAGTCATTAGTTGTTGGGGCCCTTAAGTTTGTTTGCGCGCTTCTT
CATTGCCTCGCTGAACCCCAACGCCACTGGCCACACCGGGGCATCGGCCAAAATGCGGATGCCCA
AGTACAACAGCTTCACCAGCAACTGCACCAGCTTCACCTCTTGGCTGATCTCGGTGGACAACTGG
TCGGCGTCGGCGTCCAGCGGCGCCACCTCCTTCTTGTTGATCAAG
Found at i:49689 original size:30 final size:30
Alignment explanation
Indices: 49653--49737 Score: 125
Period size: 30 Copynumber: 2.8 Consensus size: 30
49643 AGGAGGTGGT
*
49653 CCAGGTGCGCCTGGCCGAGCTGGTGGTCCG
1 CCAGGTGCGCCTGGCCGAGCTGGTGGTCCA
* *
49683 CCAGGTGCGCTTGGCCAAGCTGGTGGTCCA
1 CCAGGTGCGCCTGGCCGAGCTGGTGGTCCA
* *
49713 TCAGGTGCGACTGGCCGAGCTGGTG
1 CCAGGTGCGCCTGGCCGAGCTGGTG
49738 CGCGTGCTCG
Statistics
Matches: 48, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 48 1.00
ACGTcount: A:0.11, C:0.29, G:0.41, T:0.19
Consensus pattern (30 bp):
CCAGGTGCGCCTGGCCGAGCTGGTGGTCCA
Left flanking sequence: Indices 49153 -- 49652
GGACAAGTTGAAGAGCAACTGGGTGTGCTGCTCGGCAAACGAGTAGAGCGCGCCAATCAGACACA
TCAGCAAGAGCAACGGGATGTTCTCCACGTTGTTGACCCGCGGGTTCTTGAGCAGCGGCAAGTGG
ATGAACGGGAAGTACTTGTTGAACTCCAGCTCGTACATCCCCATGTAGTGGTTGAGCTCGTCCAC
CGTGGGGAACAGCAGGTCCAGCCGCAGCAACAGCAACAAGATGCGGTTGCGGAGCTCGACGGTGA
TGAACGGGTGCGGGGTTGCGGGGGTGGCGGTGGCCCGCAAGTCGTGCTGGCGGGTGCGGAACAAC
AGCAGGAGCGGCAGCGACCCCAGCAGCGTGGGCTCCATCGCCTCGGAGAACTCGGGCACCGGCTC
CGCAGGCACCAGGATGAGCTCGTGGAGCCAGTCGTCGTCGTCGTCGTCGAACTGGAGGTCCATCC
GCGGCTTCTTTGCGGGCGGCTCGAGCGGGTGGTCCAGGAGGTGGT
Right flanking sequence: Indices 49738 -- 50237
CGCGTGCTCGAGCTGGCCAAGCGTGATCAGCAGCTGGCGCGGGCGAGGCAGCGGGAACACCTCGG
GCGTGGACCCGGGCAAGTGGTGCGGGTGGCTCGGGTTGGCAAAGTTGGTGGTGTTCTCCACAAAG
TACTGCGAGAGGTTCTTGAACAGCTGCGGCGGGTCCTGGTGCCAGTCAAACGTGCCAAGGTCCAT
CTCGAGCCCCAGGAGAAGAAGGGTCTTGTCCTCGGCCGGCGGGTCGTGTGGCTGGGCGTAGCCCG
AGCCCAGTGCCGCGGAAAACGACGCGTGGCGCCCGTGGCCCTGCAACCGGTCCATGTGGCGGCCC
AGAATCGCGTTGGGCGTCAGCTTGGCCAGCCCCTGGGGCAGCTTCAGCTCCTTTTTGGGCGGCAG
CCGCGGGAGCATGCCCGAGCCCGTCCACGGCGGGGTGTTTTGCAGCAGCAGCGTGGGCATGGGCA
GTGGCAACTGCTTGTGCGGCAGGAACGGCGAGTCGTCCCCGGGCA
Found at i:52173 original size:19 final size:19
Alignment explanation
Indices: 52151--52215 Score: 112
Period size: 19 Copynumber: 3.4 Consensus size: 19
52141 GGGCTGCGGT
52151 TTGTGGCTTGCCTCTGGGC
1 TTGTGGCTTGCCTCTGGGC
*
52170 TTGTGGCTTGCCTCTGAGC
1 TTGTGGCTTGCCTCTGGGC
52189 TTGTGGGCTTGCCTCTGGGC
1 TTGT-GGCTTGCCTCTGGGC
52209 TTGTGGC
1 TTGTGGC
52216 CTTCAATCCC
Statistics
Matches: 43, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
19 25 0.58
20 18 0.42
ACGTcount: A:0.02, C:0.25, G:0.37, T:0.37
Consensus pattern (19 bp):
TTGTGGCTTGCCTCTGGGC
Left flanking sequence: Indices 51651 -- 52150
GCCTCGCACACCCCCAACCCGGCGAACTGGGTGGCTATCTCCGTCTGGTGGTTGCCCATGAGGTC
CTCGTTGGGCACCACCACGAGACGGAGCCCGCGCCGGAGCGCGTCGAGAATGGCCCCGGTTCCGG
CGTGGCTCACAACGACGTCAGCGTGAGCAAGCATAGCGTCGACGTCATTGGTTAGCCCGATCGCG
GTCACGTGATCGGGGATTCCCAACTGCTCGACGAACCGGGCGCTGACGTCGGTGCCGTCGCGGAG
CTCGCGCCCGTACTGGACGACGATGTCGGAGAATCCGAGCTCGGCGAGCTCGGCGAGGAACTGGG
GCGCGAGCACCTTGGCGAGGAGGCTCTTGAACGTGACGGTGGCCCCCGTTGTCACCACCAACTTC
ATGAGTGCGAAATGAGACAGTAAACAATAAGAGTTTATTTGGTGACGTAAGTTAAAATCAGGAAT
GGGCATGTAACGCGGGGGACTGTGGTTTGTGTCGAGGGCTGCGGT
Right flanking sequence: Indices 52216 -- 52715
CTTCAATCCCCGTGGGGTGACCCCCACCAGTGAGTACCCCCACTACGCTCGCAGCCCAAAGCTCG
TAGCCCTAACTAGGAAGCCAAGGAGCGAGTTCGGCGATTAGAACAATGCGGTCGGGAGTGACCCG
TCGACAGACACCCCGGCAATATGGGTATCGAGAATCCCCCCTCGATTTCGCATCCGTGCCCGATG
GCATGTTAACCACAGTGGTGGTCTGATCGGTTAGGAGCATGCATACGGATCGAGGAGATTCGGGA
ACTAATCCCGGTGGTCACGACCGGCCGCAATTGTAGCAATTGTTTGTAGAACCTTCTAGCCCACG
CTCACACACTAACCACCGTTCACTGCTTCTCATCTACGCTCTTCATCTACGCTCTCATCTACGCT
CTCCTACGCTCTCATCTACACTCTAAGATCTGCCCCCCACCGGCCTGCATGCCCCCCACCGCACG
ATTACGTAGACCCACGCCAACGTAAAACCAGGTGAAATCTCCCGT
Found at i:52600 original size:12 final size:12
Alignment explanation
Indices: 52568--52629 Score: 92
Period size: 12 Copynumber: 5.2 Consensus size: 12
52558 GTTCACTGCT
52568 TCTCATCTACGC
1 TCTCATCTACGC
52580 TCTTCATCTACGC
1 TC-TCATCTACGC
52593 TCTCATCTACGC
1 TCTCATCTACGC
52605 TCTC--CTACGC
1 TCTCATCTACGC
*
52615 TCTCATCTACAC
1 TCTCATCTACGC
52627 TCT
1 TCT
52630 AAGATCTGCC
Statistics
Matches: 46, Mismatches: 1, Indels: 6
0.87 0.02 0.11
Matches are distributed among these distances:
10 10 0.22
12 24 0.52
13 12 0.26
ACGTcount: A:0.16, C:0.42, G:0.06, T:0.35
Consensus pattern (12 bp):
TCTCATCTACGC
Left flanking sequence: Indices 52068 -- 52567
TAAGAGTTTATTTGGTGACGTAAGTTAAAATCAGGAATGGGCATGTAACGCGGGGGACTGTGGTT
TGTGTCGAGGGCTGCGGTTTGTGGCTTGCCTCTGGGCTTGTGGCTTGCCTCTGAGCTTGTGGGCT
TGCCTCTGGGCTTGTGGCCTTCAATCCCCGTGGGGTGACCCCCACCAGTGAGTACCCCCACTACG
CTCGCAGCCCAAAGCTCGTAGCCCTAACTAGGAAGCCAAGGAGCGAGTTCGGCGATTAGAACAAT
GCGGTCGGGAGTGACCCGTCGACAGACACCCCGGCAATATGGGTATCGAGAATCCCCCCTCGATT
TCGCATCCGTGCCCGATGGCATGTTAACCACAGTGGTGGTCTGATCGGTTAGGAGCATGCATACG
GATCGAGGAGATTCGGGAACTAATCCCGGTGGTCACGACCGGCCGCAATTGTAGCAATTGTTTGT
AGAACCTTCTAGCCCACGCTCACACACTAACCACCGTTCACTGCT
Right flanking sequence: Indices 52630 -- 53129
AAGATCTGCCCCCCACCGGCCTGCATGCCCCCCACCGCACGATTACGTAGACCCACGCCAACGTA
AAACCAGGTGAAATCTCCCGTTTCTCACCCAATTGCAATCATGACCCTCTCAAAGCACTGGAACT
ACGCCGACAAGGACCTCGTGGTGGCCAATCTCCAAGGCCTCGTCCGCGCCAACCCGCTGCTCTCG
TTGATCGAGCTGGAAAAGGTGGTGTTCCGCAAGCCCCTGGCAGACAAGGTGGCGATCATCTCCGG
TGGCGGAGCGGGCCACGAGCCGCTCCACGGGGGCTACGTGGGCTCGAACCTCTTGGACGCCGCCG
TGCTGGGCCTGATCTTTGCCCTGCCTGCCACCCGCCAGATCATGGCCGCCATCAAGTCGGTGGCC
ACCAAGGAGCACGGAGTGGTGCTCGTGGTCAAAAACTACACGGGCGACGTGCTCCACTTTGGCTT
GGTGGCCGAGCGCGCCAAGGCCGAGGGCTACAACGCCGAGCTCTT
Found at i:52615 original size:22 final size:23
Alignment explanation
Indices: 52568--52629 Score: 90
Period size: 22 Copynumber: 2.7 Consensus size: 23
52558 GTTCACTGCT
52568 TCTCATCTACGCTCTTCATCTACGC
1 TCTCATCTACGCTC-TCA-CTACGC
52593 TCTCATCTACGCTCTC-CTACGC
1 TCTCATCTACGCTCTCACTACGC
*
52615 TCTCATCTACACTCT
1 TCTCATCTACGCTCT
52630 AAGATCTGCC
Statistics
Matches: 36, Mismatches: 1, Indels: 3
0.90 0.03 0.08
Matches are distributed among these distances:
22 20 0.56
24 2 0.06
25 14 0.39
ACGTcount: A:0.16, C:0.42, G:0.06, T:0.35
Consensus pattern (23 bp):
TCTCATCTACGCTCTCACTACGC
Left flanking sequence: Indices 52068 -- 52567
TAAGAGTTTATTTGGTGACGTAAGTTAAAATCAGGAATGGGCATGTAACGCGGGGGACTGTGGTT
TGTGTCGAGGGCTGCGGTTTGTGGCTTGCCTCTGGGCTTGTGGCTTGCCTCTGAGCTTGTGGGCT
TGCCTCTGGGCTTGTGGCCTTCAATCCCCGTGGGGTGACCCCCACCAGTGAGTACCCCCACTACG
CTCGCAGCCCAAAGCTCGTAGCCCTAACTAGGAAGCCAAGGAGCGAGTTCGGCGATTAGAACAAT
GCGGTCGGGAGTGACCCGTCGACAGACACCCCGGCAATATGGGTATCGAGAATCCCCCCTCGATT
TCGCATCCGTGCCCGATGGCATGTTAACCACAGTGGTGGTCTGATCGGTTAGGAGCATGCATACG
GATCGAGGAGATTCGGGAACTAATCCCGGTGGTCACGACCGGCCGCAATTGTAGCAATTGTTTGT
AGAACCTTCTAGCCCACGCTCACACACTAACCACCGTTCACTGCT
Right flanking sequence: Indices 52630 -- 53129
AAGATCTGCCCCCCACCGGCCTGCATGCCCCCCACCGCACGATTACGTAGACCCACGCCAACGTA
AAACCAGGTGAAATCTCCCGTTTCTCACCCAATTGCAATCATGACCCTCTCAAAGCACTGGAACT
ACGCCGACAAGGACCTCGTGGTGGCCAATCTCCAAGGCCTCGTCCGCGCCAACCCGCTGCTCTCG
TTGATCGAGCTGGAAAAGGTGGTGTTCCGCAAGCCCCTGGCAGACAAGGTGGCGATCATCTCCGG
TGGCGGAGCGGGCCACGAGCCGCTCCACGGGGGCTACGTGGGCTCGAACCTCTTGGACGCCGCCG
TGCTGGGCCTGATCTTTGCCCTGCCTGCCACCCGCCAGATCATGGCCGCCATCAAGTCGGTGGCC
ACCAAGGAGCACGGAGTGGTGCTCGTGGTCAAAAACTACACGGGCGACGTGCTCCACTTTGGCTT
GGTGGCCGAGCGCGCCAAGGCCGAGGGCTACAACGCCGAGCTCTT
Found at i:54532 original size:24 final size:24
Alignment explanation
Indices: 54500--54571 Score: 117
Period size: 24 Copynumber: 3.0 Consensus size: 24
54490 TAGACGTTGA
54500 GTAGACTCTTCTGGATTTGTGCCC
1 GTAGACTCTTCTGGATTTGTGCCC
*
54524 GTAGACTCTTCTGGATTTGTGACC
1 GTAGACTCTTCTGGATTTGTGCCC
* *
54548 GTAGACTCTTCTGGGTTCGTGCCC
1 GTAGACTCTTCTGGATTTGTGCCC
54572 ATCTTTGTCA
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 44 1.00
ACGTcount: A:0.12, C:0.25, G:0.26, T:0.36
Consensus pattern (24 bp):
GTAGACTCTTCTGGATTTGTGCCC
Left flanking sequence: Indices 54000 -- 54499
CTTGAAGGCGAACCCGGTGTCCGACGACCCCGTGGAGACCTTGAACCGCATCACCGACATCGTGG
AGGAGACGATGGGCGGCACGCTGGGCGGGCTCTACCTGATCTACTTGACGGCGCTCTCCAAGCAC
TTGAAGGGCACTTCGGGCGAGCAGGTGGCTGAGGCGATGAAGGGCGCGCTTGACGACGGGTTGTT
CAAGTACACCCGGGCCCGCAAGGGCGGGCGCACCCTCGTGGACACGTTGCAGCCGTTTGTGGAGA
CGTTTGCCTCCACCAAGGACTTGAAGAAGGCGGTGGAGGCTGCCATCGAGGGGTGCGAGTCCACC
AAGACGCTCGAGGCCAAGTTTGGGCGGGCCAGTTATGTGGATGAGTCCGAGTTCAAGCAGGAGGG
CGGTATCCCCGACCCTGGTGCTGTGGGCTTGTTGGCGATCATCAAGGGCTTCACTAGCTAGTTAT
TTATTACGCATGAACAAGTGACGGAGAGGTCAGGGTAGACGTTGA
Right flanking sequence: Indices 54572 -- 55071
ATCTTTGTCACGAAAACTCCACCGGGTTTGTTTAACCCTTGACTGGTGGCTGACACCCGGTACGG
AGCGGGCTGGCTGGATGCCAACTCCAAAAGAGCGACGAACGACGACGCAGCGTTGTAACGATTCA
CGCCATCTCCGTGCCCACTGGGGAACATGGCTGCAAAAGACATGCACGAGCACTGTGTCGCCTCG
AACTTTGCTTCGATAACATCGGTAAACTGGCGGAGCTGTTCGGAATGGCTGAAGGAGGTAAAATC
GCTGGGGTCGTTATCGGCCCAGTTGTCGTACTCCTCGACTATCTGCTCAAGATCGAAATCGTGGA
GAGGATGAGAATGGGCGACCACCTGGCCCTCACTGAGTGATAGCTCAGGAAGCGGGTCAAAGTGG
TTCTGAGACCGACTCTGGGGTGGCAAGCCTTCGTCGGCCATCCCCGTTTCCTGGTCCTCGCGGTT
ACTGGCCTCCAAGAGCTGGGTAAGGGTGTGGCTGATCTGGCTGGG
Found at i:56370 original size:16 final size:16
Alignment explanation
Indices: 56349--56403 Score: 67
Period size: 16 Copynumber: 3.4 Consensus size: 16
56339 AAACCATTCT
56349 TCAAAACGACTCTACA
1 TCAAAACGACTCTACA
*
56365 TCAAAACGAATCTACA
1 TCAAAACGACTCTACA
* *
56381 TCAACAC-ACCTCTACG
1 TCAAAACGA-CTCTACA
56397 TCAAAAC
1 TCAAAAC
56404 AACCTACCTA
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
15 1 0.03
16 32 0.97
ACGTcount: A:0.44, C:0.33, G:0.05, T:0.18
Consensus pattern (16 bp):
TCAAAACGACTCTACA
Left flanking sequence: Indices 55849 -- 56348
GATCCCAACGGTCCCCAGAGTTATTAAGTGTGCTGCCTCGGTGCACACAGCCGGCACATCGGTAG
CCATGGCTTCCCGACGACGGGTACGGGCTCCGGTTCCCTTGGCGGTCGACTTGAGGCCAAAAGTG
CCAAGCACGTACATTCGGGCCACGGCGTCCAGAGGAGAGTAAATTAGCGAGTCCATGAGAAATGG
AGAAGACAATTGACCTTCTCTTATAGCATTTTCAAGGGTGGTGGATGTTGTGTGCGTGGCGTGAC
GATATGTCCCAGAGGTATCAAAAGTGGCCTAGACCGACGCGTGTTGAGACGCGTAAAAAGAAGCC
TATTGTGGAAGTAGAGATAGTTACCATTACGTAGGGTTATTTCTTTGATAACTAGCTCAGTTTCT
GTTCTGAATCCGTCATATTCTATCTGGTTGCAAACAAGTCTCGAAACTGAAAACCTAGACACTAA
GTAACTTGCTGCATGTGGATACACCCCACTGTACCAAACCATTCT
Right flanking sequence: Indices 56404 -- 56903
AACCTACCTAAATCCATCCTTTCCGTGTCAATTCGATCTATTACTAATTAGTCTCGTTCATCCAG
TCCAACGTGTACTTGATCCCCTGTTCCAAGTCCACCGCGGGGGTGTACCCCAACAACGTCTTCGC
CTTCGTAATGTCGTGGTACCGGTTGGCACAGACCACCTTCACTCTGAAAGGAGTAATGCCGGGCT
CCTTCCCGAGCATGTTCAGGACAAACTCCGACACGTAGCCCAAGCAGATAGCCACCGGGCGCGCC
AACTTGACGTAGCTCTTGTCAACAATCCCGTCCTGCTTCCACACCGTGCGCGCAAGCGTCCAGAA
GTAGGTGGGGGCATCGTTGGTGATGAAAAAAGTTTCGCCAGCAATGGCCTTGATCTCGTCATCCG
ACCCGCCCAAAAGCTTCTGGGTAGCCAACACGTGCGCGTCAGCCACGTTCCCGACGTAGGTCCAG
TCAAACAAGTTGTTGTTGTCGCCAAGCTGGTACTTCAGCTGGCCA
Found at i:58429 original size:12 final size:12
Alignment explanation
Indices: 58385--58435 Score: 51
Period size: 9 Copynumber: 4.8 Consensus size: 12
58375 ATTTCGGGGG
58385 TTCCGGCTTGGT
1 TTCCGGCTTGGT
58397 TT-C--CTTGGT
1 TTCCGGCTTGGT
*
58406 TT-C--CTGGGT
1 TTCCGGCTTGGT
58415 TTCCGGCTTGGT
1 TTCCGGCTTGGT
58427 TTCCGGCTT
1 TTCCGGCTT
58436 CGAGCCAAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
9 16 0.47
10 1 0.03
11 1 0.03
12 16 0.47
ACGTcount: A:0.00, C:0.25, G:0.29, T:0.45
Consensus pattern (12 bp):
TTCCGGCTTGGT
Left flanking sequence: Indices 57885 -- 58384
GCAGTCTAACCCTTTCCGTCTCTACTTTCTTGATCCACCAAAAATCATCTTACATCTTCTCTAAT
CAACGCTTGATCTACTTTACACTAAAATACAAACAAATGCTTTTCACGGGCCACCTCGGCGTCAG
AGTACTGCGCCGGACGCACCGTAATCGAGCCAAACAGGTATTGTGGCGATGGTTGGGCGGGCTGA
GCCACGGGCTTCGCGGGCAACAGGGCCGGCGCGGTGCCGTTGGCCCCAAAGAGAGCCGGTTTGGA
GTCAGTCTTGGGCTTAGCACTCTTGAAAGCAGCAGCTTTGGGCTCAGACTCGGGCTTGGGCGCAC
TCTTCGACTCGGCCTTGGCTGACTTGAACTCGAACCCCTTCTTCTCCACTGGCTTAAGCTGGTTT
GCGTTCTCAGTGCACTTTTTGGGCCCGTTCAACCCAAACGTGGGCGCCGCGGTGGGCTGTTTGAT
CTCTTTGGCGGTCTGGGAGTTGCCAAAGAGGTTGAATTTCGGGGG
Right flanking sequence: Indices 58436 -- 58935
CGAGCCAAAACTGAACCCGGGCCCGTTGGCCTTGGTCTCGTCCGGCTTGCCAAACGTAAACGACT
TCGGCTGCGAAACCGGCTCGGACTTCTCCTGGGAGTCCTTGGGCTTCGCCGGGGTGCTCGTCTCC
GGGGTGTCCACCTCCATGCTGGATGCAGGCAACGGGGTGGACTTGTCGTACGCCAACGTTTTGGT
GATGTCCTGGGCTGTCACCTTGCGTTTGGCGCCGCCCGAGGCCGCGTAGGGGTTCCCGAACTGCG
CCAGCTTTGCAGCGGCGCCGTCAGCGGGCTTGTGGCCGTTCTCCTCCTGGTTTTTCAACACCGCT
TCGAGAGCTTGGTAGGTTTTCAGCTTGGGACCGCGTGTGGCGGCCAAATGACTCGTGTTGAGCAT
CACCAGCGTGTTGCCAAACCCATCGAACGTGGTGTTGGCCAGGGTTTGTCCCGAAACCTGGCCCA
GCCCGTTCTGCCCGGCCAATTGCCGTTCTTGCAGGCTCCGGTGCC
Found at i:67627 original size:15 final size:14
Alignment explanation
Indices: 67596--67659 Score: 60
Period size: 15 Copynumber: 4.5 Consensus size: 14
67586 TGACCCCACT
*
67596 TCTAGTCCTCTCA-
1 TCTAGTCCACTCAC
67609 -CTAGTCCACTCAC
1 TCTAGTCCACTCAC
67622 TCCTAGTCCACTCAC
1 T-CTAGTCCACTCAC
* *
67637 ATCTAGTACTCTCAC
1 -TCTAGTCCACTCAC
67652 TTCTAGTC
1 -TCTAGTC
67660 TCTCACTTCA
Statistics
Matches: 42, Mismatches: 5, Indels: 6
0.79 0.09 0.11
Matches are distributed among these distances:
12 11 0.26
15 30 0.71
16 1 0.02
ACGTcount: A:0.20, C:0.39, G:0.08, T:0.33
Consensus pattern (14 bp):
TCTAGTCCACTCAC
Left flanking sequence: Indices 67096 -- 67595
GCTTGCCTTCGTTGTTGAAGGGTGCTAACATTGCTGGTTTCATCAAGGTGGCCGACGCTATGTTC
GACCAGGGTGAGGTTTTCTAAACTGGTTTTAGTAATGATCCAACGATTTGCTTTTATAGATGTTA
ATATGATAGATTTTTGATTTGCGTAATTTGCAGCCACTGCCGTTTTTGGAAAGACCCTGCGCCGG
AAAAACTTTAGCATTCGGTGCATCATTAGCGGTCTGGGGTGACATGGCATTGCAGGGTCACGGGT
GGGGTCATCGTAGCGGAGAATGAGCTCGTGCTTTGGGTGGGAGTGAAATGGTGGCCCGCTCGTGA
TCGTTCAAACTTTGCGGTGGCTTGTCACGAAAGACACCAGGTCCACCCCATATATATAGTCCTCC
TTATCTTATCAGTTCCCATGATCCAGATAAGTTCTGATCACCTAAGCACAATCAGCCCGATAACA
CAAAATGAGTCGGAGGAAGTCACCCTATTCCAGTTTGACCCCACT
Right flanking sequence: Indices 67660 -- 68159
TCTCACTTCATAGCTATGCATTTCTAATTACTCCTGATACTCGTTTTCAATCTTCTTTCTCAAGT
CCGCGTACTTGGACTTGGCAAACGACGACCCGCCGCCGTCAGCAAGCTTCTCCGAGTACACCAAC
CGGGCCATGTTCATGAACTCGGGCTTGGAGAACTTGTGAGGGTTTTCTCTCACCTCCTGGATAAA
GCTGTGCTCGTTGAGCGAGAACAAGTCGTAGTATGCCACCAGCAACGTGAAGTCGGCACCGTCGC
CGCCCGCCAAGTTGCGCAACATCTGCTGGAGAATGTAGATGTTGAGCATCACCCGCTTCACGCCA
AACGCCAGGATCTTCAGCACCACAAACGACCCCTGGATGAGCACCCGGTTGAGGAAAGTGTCCAA
CCCACCGTACACGTTGAGGCGGTGGCGGTCCGACAACCGCACCGCGAGCTTGTTGTTCAACGTGT
AGATGTCCTTGTTGAGCACCAGCACAAACCGGTCCGCGTCCGCCG
Found at i:71418 original size:27 final size:27
Alignment explanation
Indices: 71299--71407 Score: 148
Period size: 27 Copynumber: 4.0 Consensus size: 27
71289 CGGGGTACCC
71299 GCTGCCGTAGGGGGT-GGGCCCGGAACT
1 GCTGCCGTAGGGGGTGGGGCCC-GAACT
* * *
71326 GCTGCCGTAAGGGGTAGGGCCGGAACT
1 GCTGCCGTAGGGGGTGGGGCCCGAACT
* * *
71353 GCTTCCGTATGGGGTGGGGCCCGAGCT
1 GCTGCCGTAGGGGGTGGGGCCCGAACT
71380 GCTGCCGTAGGGGGTGGGGCCCGAACT
1 GCTGCCGTAGGGGGTGGGGCCCGAACT
71407 G
1 G
71408 GACCCGTAGG
Statistics
Matches: 71, Mismatches: 10, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
27 66 0.93
28 5 0.07
ACGTcount: A:0.12, C:0.25, G:0.47, T:0.17
Consensus pattern (27 bp):
GCTGCCGTAGGGGGTGGGGCCCGAACT
Left flanking sequence: Indices 70799 -- 71298
AAGAGCGCCACTGCCATCTCGATGGGGTTGGCCAGATCGTCGAGCATCAGCGGCCAGTCGTACTT
GAGGTTGTTGAAGATCTCCTTGAGATCGTCCATGGGCTCGCCCTGGCCCGTGTACCGCAGCGTGG
CCCGGCCCCTGGGGGTGTAGTTGGTGGTGGCCAGCGACAGCACCCGCGAGTCGAGGCGGGACGCG
TCGCGCGATGCGTGGCGTGACCCGTACGCGTCTGGTTCGGGCTCGTTTAGGTCATACGGATCGGG
CTCGTACGCGTCGGATGCGTGGCGTGACCCGTCGCGCTCGGCGCGGTAAGACTCAAACCGCCCGT
TGTCAGAGCCTCGCCCACGCAAGTTGGGGCTGTTGCGCCCAAGCACGGGCGACCCGTAGGGGTTG
CTGGCACTGACGCCACGCGAGCCCGGGCGCGACAAGCTCAGGTAGCTCTCGTGCAGCCGGTTGCT
GATGCGCGAGCGGTGGGTGGCGCCACTGTCGCGGGCGGGGTACCC
Right flanking sequence: Indices 71408 -- 71907
GACCCGTAGGGAGACGGTCCGGAACTGCCGTACGACGAGGGGCCCGAGGTGCTCCCGTAGGGGTT
GGGGCCTGATCCAGCGCGCCCGTAGCTGGTACGTGCGCGGGGATCGTCGTCAGGCTCGCGGGGCG
ACTCGCGTGAGTTGGGGGTCCCGTCTCGGGAATATGTCCCGTGGCTGCGCCCGCCGGCGCGCGAA
CCGGTGCCGTACTGCGACGGTGCCGCGTAGGGGTTGTCTGCGGGCGGGTTTTGGGTACTGGAGCC
ATTGGTGGAGGCGCCAAACGAGCGCTGGCTCCGCAGGGATCTCATGGGTGTGGTGGTGGTGGGTG
ATCCCGGTGAATTTTGCGGGTGGTAGTCGTGTTGATTTTCGCGCGTGCGGCTGGGTGGAGGAAGG
ACGAGGATGGTGGGATGGGTGGATGGACTGATGAAGGGGGGCTGTGGGGTGGTGTGTAGGGTGTC
AATTGGGTGGGGAGGGGGTAAGTGTGATGTCTTTAGGTTGACCGG
Found at i:71434 original size:81 final size:79
Alignment explanation
Indices: 71299--71478 Score: 188
Period size: 78 Copynumber: 2.3 Consensus size: 79
71289 CGGGGTACCC
** *
71299 GCTGCCGTAGGGGGT-GGGCCCGGAACTGCTGCCGTAAGGGGTAGGGCCGGAACTGCTTCCGTAT
1 GCTGCCGTAGGGGGTGGGGCCCGGAACTGCACCCGTAAGGGGTAGGGCCGGAACTG---CCGTAC
** *
71363 GGGGTGGGGCCCGAGCT
63 GACGAGGGGCCCGAGCT
* *
71380 GCTGCCGTAGGGGGTGGGGCCC-GAACTGGACCCGT-AGGGAG-ACGGTCCGGAACTGCCGTACG
1 GCTGCCGTAGGGGGTGGGGCCCGGAACTGCACCCGTAAGGG-GTA-GGGCCGGAACTGCCGTACG
*
71442 ACGAGGGGCCCGAGGT
64 ACGAGGGGCCCGAGCT
* *
71458 GCTCCCGTAGGGGTTGGGGCC
1 GCTGCCGTAGGGGGTGGGGCC
71479 TGATCCAGCG
Statistics
Matches: 85, Mismatches: 11, Indels: 9
0.81 0.10 0.09
Matches are distributed among these distances:
78 37 0.44
80 5 0.06
81 37 0.44
82 6 0.07
ACGTcount: A:0.13, C:0.26, G:0.46, T:0.15
Consensus pattern (79 bp):
GCTGCCGTAGGGGGTGGGGCCCGGAACTGCACCCGTAAGGGGTAGGGCCGGAACTGCCGTACGAC
GAGGGGCCCGAGCT
Left flanking sequence: Indices 70799 -- 71298
AAGAGCGCCACTGCCATCTCGATGGGGTTGGCCAGATCGTCGAGCATCAGCGGCCAGTCGTACTT
GAGGTTGTTGAAGATCTCCTTGAGATCGTCCATGGGCTCGCCCTGGCCCGTGTACCGCAGCGTGG
CCCGGCCCCTGGGGGTGTAGTTGGTGGTGGCCAGCGACAGCACCCGCGAGTCGAGGCGGGACGCG
TCGCGCGATGCGTGGCGTGACCCGTACGCGTCTGGTTCGGGCTCGTTTAGGTCATACGGATCGGG
CTCGTACGCGTCGGATGCGTGGCGTGACCCGTCGCGCTCGGCGCGGTAAGACTCAAACCGCCCGT
TGTCAGAGCCTCGCCCACGCAAGTTGGGGCTGTTGCGCCCAAGCACGGGCGACCCGTAGGGGTTG
CTGGCACTGACGCCACGCGAGCCCGGGCGCGACAAGCTCAGGTAGCTCTCGTGCAGCCGGTTGCT
GATGCGCGAGCGGTGGGTGGCGCCACTGTCGCGGGCGGGGTACCC
Right flanking sequence: Indices 71479 -- 71978
TGATCCAGCGCGCCCGTAGCTGGTACGTGCGCGGGGATCGTCGTCAGGCTCGCGGGGCGACTCGC
GTGAGTTGGGGGTCCCGTCTCGGGAATATGTCCCGTGGCTGCGCCCGCCGGCGCGCGAACCGGTG
CCGTACTGCGACGGTGCCGCGTAGGGGTTGTCTGCGGGCGGGTTTTGGGTACTGGAGCCATTGGT
GGAGGCGCCAAACGAGCGCTGGCTCCGCAGGGATCTCATGGGTGTGGTGGTGGTGGGTGATCCCG
GTGAATTTTGCGGGTGGTAGTCGTGTTGATTTTCGCGCGTGCGGCTGGGTGGAGGAAGGACGAGG
ATGGTGGGATGGGTGGATGGACTGATGAAGGGGGGCTGTGGGGTGGTGTGTAGGGTGTCAATTGG
GTGGGGAGGGGGTAAGTGTGATGTCTTTAGGTTGACCGGTGTGGTTTGTGTAATTTTCAAAGATT
TTGGTATGATACTGAAAAATTTGAGGAAGTAAAAATGTGATGTAA
Found at i:84194 original size:21 final size:21
Alignment explanation
Indices: 84170--84247 Score: 70
Period size: 21 Copynumber: 3.7 Consensus size: 21
84160 CAGTAGCCTG
*
84170 GTGGTGCTCTTCAAGTGACTC
1 GTGGTGCTCTTCAGGTGACTC
* *
84191 GTGGGGCTCGTCAGGTG-CTTC
1 GTGGTGCTCTTCAGGTGAC-TC
*
84212 GTTGTGCTCTTCAGGT-ACTCC
1 GTGGTGCTCTTCAGGTGACT-C
* *
84233 GTGATGCTCCTCAGG
1 GTGGTGCTCTTCAGG
84248 AGCGTGCTGT
Statistics
Matches: 45, Mismatches: 9, Indels: 6
0.75 0.15 0.10
Matches are distributed among these distances:
20 2 0.04
21 43 0.96
ACGTcount: A:0.10, C:0.26, G:0.32, T:0.32
Consensus pattern (21 bp):
GTGGTGCTCTTCAGGTGACTC
Left flanking sequence: Indices 83670 -- 84169
GCTCGTGGATGTCGAGAGACCTTAAAGCGCTGAATAGATTAATGGGAATAATGAAATGACAGATA
TCAGGAACTTACATGCGTAATGACGGTAATACTTTACATTGAATAATGTCCATTATGTAGTCGAT
TGAACTTGAAACCGTACTAAAGCTCATCGTGAGGGGTATCTTGGGGCTGCTCGTGAGCTGTTTGT
TGCGCTTCCCCGTGCTCCTGTTGCTGCTCCAAGGACTCGACAGCTTCGTGTAGAGCTTCTTGATC
CACAACCGGCTCTTCCTCGGGCTCAGCGTGTGGTGGGTCGACGGGGGGAGCTTCGTGCTCAACGG
AGGGCTCGGGAATTTGCTCAGGGGCCGGTTCGTGAACGTCATTGTAAGAATTCTCCTCGTTAATG
GAAGAAACCACACCCTGGGCCTCCCGGATATCCTCAGCATCGTTTTCCGCTTCTTGGACTTGGTG
GTCGATGTGCATTTCAGGTGCATCATGGTGGGCTTCAGTAGCCTG
Right flanking sequence: Indices 84248 -- 84747
AGCGTGCTGTTGCTCAGGTGCTTCATGTGATTTATACTCAGCCTCATCTGCCTGAACATCCTGGG
TTGCTTCTGGCTCGTCAACCGGCTCAGCAAGCTCTTCTTCCGCATAGTTGTACTCACCATCCGCA
GCCTGGGCGTCATCAGAAGCTTCTTCCACCGCCGGGGTGGTTTGAGCCTCTTCAGGGGCCTCATG
AACCATCTCCTCTTTGCGCACCTCGGAAGGCTCACCAATAGGCTGGTTCTCCTCGTGTTCTTGTG
CCTCATCCAGAGGCCACACCACCTCGATTGTCGCTGGATCTTCTTCCACTTCCTCGATATGGCTC
AGATCCATCATCGACAGTGCTATCACAGAGGCAGCCACCACAGTGGACATCAAGGCTTCGGTCAC
CAAATCCACCGAGGGCGTAGCCTCGGCCAATGCCTCCGACGCAGCCTGTGACATGTCTCCCACAA
CCTCCTTGGCACCCTTGGAGCCCCCAAACATCCACGTAAACACTC
Found at i:88179 original size:7 final size:7
Alignment explanation
Indices: 88158--88201 Score: 63
Period size: 7 Copynumber: 6.4 Consensus size: 7
88148 GCACTCGGAG
88158 CACCAGC
1 CACCAGC
88165 CA-CAGC
1 CACCAGC
88171 CACCAGC
1 CACCAGC
88178 CACCAGC
1 CACCAGC
*
88185 CACCAAC
1 CACCAGC
*
88192 CACCATC
1 CACCAGC
88199 CAC
1 CAC
88202 TCAAACACAG
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
6 6 0.18
7 28 0.82
ACGTcount: A:0.32, C:0.57, G:0.09, T:0.02
Consensus pattern (7 bp):
CACCAGC
Left flanking sequence: Indices 87658 -- 88157
AATTTACAGAAATAAGAAGAGTAGGTCTAAAAACATACGAACAACCCATTGCGCTTTGGGCTGTA
GCGTACCTACTAATAACGCTGAATCTGGGGGGCATTCTCAACTACCTATCCTCATTTTTCGAGAT
ACAGGCGGATCCTAGGCAGATCGCGCATTCCGAGGCGCGTCATGCAGCGTCTACACTTTGAGTCT
AAATTAACCACGCTACAGACAGAGCGCAGGGCAAGTAAGCATGTATACCAGTGTTTGATACAATT
AGCTATCCATACAAACTTCCCCGGGCTCAATTGCTCGTAAATTACCGATCGGCACCCATTGTTTG
GGTGCCGAAATCTAGTTGGCATGCCGATAATATCGTTCCCCGCTCTCCTGTCTACAAAGCGTTAC
CCGCCCCATAGCCCAGCCGCTGAGATATAAATATGGGTGCTCCCCCCAGATTTTGATTTTTTTTA
TCTACAACTTCCTCAGCCTCCACCATCCGGAGTAAGCACTCGGAG
Right flanking sequence: Indices 88202 -- 88701
TCAAACACAGCCTACTACTAACAGACACTAGCCACCCCGGTCACTGGACCTCTATGCTACTGTGA
TGGTAGCATTGAGCCACCCGGGGTACCCCAGCCATGGCGCCTTGTTGGGTATATAGGGTATATAG
AGGGGTGGCCACCGTCGGCCATCCCGCCGGGTGGGCCGACGACCACTCCGGGGTAGAAGGGTGGC
TGACCACGGCCACCCTGGTGTAGGGGATGGCTGACCACGGTCATCCTGAGGGGTGGGCTGACGAT
GGCCACCCCGGTGTAGAGGATGGCTGACCACGGCCATCCCGGCGGGGAGGCCGACGGGTGGCCCC
TCCGGTGTAGGAGGGTAGCTACGGCCGGCCCTGAGTAGGCGGGTGGGCCGACCACGGCCACCGCG
CAGTAGGAGGCGGCTACGGTCAGCGCTCTGTAGGCGGGTGGGCCGGTACGGTCACCCCGATGTAG
GAAACGGGGTGGGCCCCCTACGGCCCCTCCGTTTTGTGACCTAGG
Found at i:88428 original size:31 final size:30
Alignment explanation
Indices: 88393--88503 Score: 113
Period size: 31 Copynumber: 3.7 Consensus size: 30
88383 GGTAGAAGGG
88393 TGGCTGACCACGGCCACCCTGGTGTAGGGGA
1 TGGCTGACCACGGCCACCC-GGTGTAGGGGA
* *
88424 TGGCTGACCACGGTCATCC--TG-AGGGG-
1 TGGCTGACCACGGCCACCCGGTGTAGGGGA
* * *
88450 TGGGCTGACGATGGCCACCCCGGTGTAGAGGA
1 T-GGCTGACCACGGCCA-CCCGGTGTAGGGGA
88482 TGGCTGACCACGGCCATCCCGG
1 TGGCTGACCACGGCCA-CCCGG
88504 CGGGGAGGCC
Statistics
Matches: 64, Mismatches: 10, Indels: 12
0.74 0.12 0.14
Matches are distributed among these distances:
26 1 0.02
27 17 0.27
28 4 0.06
30 2 0.03
31 39 0.61
32 1 0.02
ACGTcount: A:0.16, C:0.30, G:0.38, T:0.16
Consensus pattern (30 bp):
TGGCTGACCACGGCCACCCGGTGTAGGGGA
Left flanking sequence: Indices 87893 -- 88392
ATGTATACCAGTGTTTGATACAATTAGCTATCCATACAAACTTCCCCGGGCTCAATTGCTCGTAA
ATTACCGATCGGCACCCATTGTTTGGGTGCCGAAATCTAGTTGGCATGCCGATAATATCGTTCCC
CGCTCTCCTGTCTACAAAGCGTTACCCGCCCCATAGCCCAGCCGCTGAGATATAAATATGGGTGC
TCCCCCCAGATTTTGATTTTTTTTATCTACAACTTCCTCAGCCTCCACCATCCGGAGTAAGCACT
CGGAGCACCAGCCACAGCCACCAGCCACCAGCCACCAACCACCATCCACTCAAACACAGCCTACT
ACTAACAGACACTAGCCACCCCGGTCACTGGACCTCTATGCTACTGTGATGGTAGCATTGAGCCA
CCCGGGGTACCCCAGCCATGGCGCCTTGTTGGGTATATAGGGTATATAGAGGGGTGGCCACCGTC
GGCCATCCCGCCGGGTGGGCCGACGACCACTCCGGGGTAGAAGGG
Right flanking sequence: Indices 88504 -- 89003
CGGGGAGGCCGACGGGTGGCCCCTCCGGTGTAGGAGGGTAGCTACGGCCGGCCCTGAGTAGGCGG
GTGGGCCGACCACGGCCACCGCGCAGTAGGAGGCGGCTACGGTCAGCGCTCTGTAGGCGGGTGGG
CCGGTACGGTCACCCCGATGTAGGAAACGGGGTGGGCCCCCTACGGCCCCTCCGTTTTGTGACCT
AGGGAGAACCCCCTACGGTCACAACGGTTCATGGTCACCGGGGAGAGCCCCCTACGGTCAGTCCG
TTTTTTCGATTTTTCGGCCTTTTTTTCAACAGTCGCTTAATTTTTCGGTTAAAAAATATGTCATT
TCGATCTTGAGGTGCATGAGTAGAAGCCACTGGCCGTTAGAGTGTACTTTTCGGGGGGATTCCTA
AGATACATTCTGGTTCATTCACCTTAAAGAAACGTTTCCTTCAAGATTGCCACAGCAGAATGGTC
TCTACACTCTTTAATTAAACCCAATACAATTAAATATGGCACAGG
Found at i:88466 original size:58 final size:57
Alignment explanation
Indices: 88390--88500 Score: 168
Period size: 58 Copynumber: 1.9 Consensus size: 57
88380 CGGGGTAGAA
* * *
88390 GGGTGGCTGACCACGGCCACCCTGGTGTAGGGGATGGCTGACCACGGTCATCCTGAG
1 GGGTGGCTGACCACGGCCACCCCGGTGTAGAGGATGGCTGACCACGGCCATCCTGAG
* *
88447 GGGTGGGCTGACGATGGCCACCCCGGTGTAGAGGATGGCTGACCACGGCCATCC
1 GGGT-GGCTGACCACGGCCACCCCGGTGTAGAGGATGGCTGACCACGGCCATCC
88501 CGGCGGGGAG
Statistics
Matches: 48, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
57 4 0.08
58 44 0.92
ACGTcount: A:0.16, C:0.29, G:0.39, T:0.16
Consensus pattern (57 bp):
GGGTGGCTGACCACGGCCACCCCGGTGTAGAGGATGGCTGACCACGGCCATCCTGAG
Left flanking sequence: Indices 87890 -- 88389
AGCATGTATACCAGTGTTTGATACAATTAGCTATCCATACAAACTTCCCCGGGCTCAATTGCTCG
TAAATTACCGATCGGCACCCATTGTTTGGGTGCCGAAATCTAGTTGGCATGCCGATAATATCGTT
CCCCGCTCTCCTGTCTACAAAGCGTTACCCGCCCCATAGCCCAGCCGCTGAGATATAAATATGGG
TGCTCCCCCCAGATTTTGATTTTTTTTATCTACAACTTCCTCAGCCTCCACCATCCGGAGTAAGC
ACTCGGAGCACCAGCCACAGCCACCAGCCACCAGCCACCAACCACCATCCACTCAAACACAGCCT
ACTACTAACAGACACTAGCCACCCCGGTCACTGGACCTCTATGCTACTGTGATGGTAGCATTGAG
CCACCCGGGGTACCCCAGCCATGGCGCCTTGTTGGGTATATAGGGTATATAGAGGGGTGGCCACC
GTCGGCCATCCCGCCGGGTGGGCCGACGACCACTCCGGGGTAGAA
Right flanking sequence: Indices 88501 -- 89000
CGGCGGGGAGGCCGACGGGTGGCCCCTCCGGTGTAGGAGGGTAGCTACGGCCGGCCCTGAGTAGG
CGGGTGGGCCGACCACGGCCACCGCGCAGTAGGAGGCGGCTACGGTCAGCGCTCTGTAGGCGGGT
GGGCCGGTACGGTCACCCCGATGTAGGAAACGGGGTGGGCCCCCTACGGCCCCTCCGTTTTGTGA
CCTAGGGAGAACCCCCTACGGTCACAACGGTTCATGGTCACCGGGGAGAGCCCCCTACGGTCAGT
CCGTTTTTTCGATTTTTCGGCCTTTTTTTCAACAGTCGCTTAATTTTTCGGTTAAAAAATATGTC
ATTTCGATCTTGAGGTGCATGAGTAGAAGCCACTGGCCGTTAGAGTGTACTTTTCGGGGGGATTC
CTAAGATACATTCTGGTTCATTCACCTTAAAGAAACGTTTCCTTCAAGATTGCCACAGCAGAATG
GTCTCTACACTCTTTAATTAAACCCAATACAATTAAATATGGCAC
Found at i:89294 original size:24 final size:24
Alignment explanation
Indices: 89267--89334 Score: 73
Period size: 24 Copynumber: 2.8 Consensus size: 24
89257 CTATCAAAAC
* *
89267 ATTTGACCAGAGTTCTAACCAGAT
1 ATTTAACCAGACTTCTAACCAGAT
* *
89291 ATTTAACCAGTCTTCTAACCAGAC
1 ATTTAACCAGACTTCTAACCAGAT
* * *
89315 ATCTCACCAGACATCTAACC
1 ATTTAACCAGACTTCTAACC
89335 TGATTTCTAC
Statistics
Matches: 36, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 36 1.00
ACGTcount: A:0.34, C:0.29, G:0.10, T:0.26
Consensus pattern (24 bp):
ATTTAACCAGACTTCTAACCAGAT
Left flanking sequence: Indices 88767 -- 89266
TTTCGATTTTTCGGCCTTTTTTTCAACAGTCGCTTAATTTTTCGGTTAAAAAATATGTCATTTCG
ATCTTGAGGTGCATGAGTAGAAGCCACTGGCCGTTAGAGTGTACTTTTCGGGGGGATTCCTAAGA
TACATTCTGGTTCATTCACCTTAAAGAAACGTTTCCTTCAAGATTGCCACAGCAGAATGGTCTCT
ACACTCTTTAATTAAACCCAATACAATTAAATATGGCACAGGTGCTGACGCTCCTGATAGCGGGG
CTTTTTGAGATCGTGGTGCTGACGTCGGTGACTGGGCGCACTGTCGCTTGGAGTAAAGATGGACG
CAGGGGTTTTGAGGGGTTGAAAGTGATCCATCCGCTGCCGATAGCGCTAGAGGACGACCCGGTAG
GCAACGGGAGCCAGGAGAGTGAAAAAGGTCACTAGACCACAAGGCTAGAGTTCAGACCAGAAAGC
AGACAAAAAATATAACCAGAGGTTTAACCAGGTATCTATCAAAAC
Right flanking sequence: Indices 89335 -- 89834
TGATTTCTACCAAGCCTTTTACCCAGCCCACCAAAAATGGACACAAAGTACCCATTGTAAGTGGC
ATCGCTATTGCCAACGGCAACTCCGCCAGCGACCCCTACCTCGAGCTCTTGAAACAAAACATTTT
GAGCGTGACCGGTGACCCGCACCGGGCTTGCATTATCGCCGAGGTGATAGGGGGCGATTTGATTG
CCGCCAAACACGAGGTGATCACCAACCCTTTCCTGTCCTCCAAAAACTACGGTCTGAAAACACCC
TGAAGTTCACTCCCGCGTCATTGGCCAAGTACAACACCTGTGCACTAAAGCTAGGTATGCGGGTG
CTGGTGCTGGTGATGGCTTGAGCCGGTGCTGGTGATGCCGTGGAACCTAAATCCCGCAGTGATAT
GATGGTCCCAACCGCTGTTGCACCGGTTAGTGATGCCCTGACGCGTTAGGCGGCAAGGGTTTACC
CTGTTGACCAACCCCCAGTATTTGCATGTTTCCGCGAACATCCCT
Found at i:89965 original size:21 final size:21
Alignment explanation
Indices: 89940--89989 Score: 91
Period size: 21 Copynumber: 2.4 Consensus size: 21
89930 AAGACAATGG
*
89940 CGGAGAGCACGGCGATGGCCA
1 CGGAGAGCACGGCAATGGCCA
89961 CGGAGAGCACGGCAATGGCCA
1 CGGAGAGCACGGCAATGGCCA
89982 CGGAGAGC
1 CGGAGAGC
89990 GTGGCCCGTT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.26, C:0.28, G:0.42, T:0.04
Consensus pattern (21 bp):
CGGAGAGCACGGCAATGGCCA
Left flanking sequence: Indices 89440 -- 89939
TCGAGCTCTTGAAACAAAACATTTTGAGCGTGACCGGTGACCCGCACCGGGCTTGCATTATCGCC
GAGGTGATAGGGGGCGATTTGATTGCCGCCAAACACGAGGTGATCACCAACCCTTTCCTGTCCTC
CAAAAACTACGGTCTGAAAACACCCTGAAGTTCACTCCCGCGTCATTGGCCAAGTACAACACCTG
TGCACTAAAGCTAGGTATGCGGGTGCTGGTGCTGGTGATGGCTTGAGCCGGTGCTGGTGATGCCG
TGGAACCTAAATCCCGCAGTGATATGATGGTCCCAACCGCTGTTGCACCGGTTAGTGATGCCCTG
ACGCGTTAGGCGGCAAGGGTTTACCCTGTTGACCAACCCCCAGTATTTGCATGTTTCCGCGAACA
TCCCTACTCGGCGGGTGTTGCTCAGTTTCAGGAAGAGCACGGCGGACAAGTGGATGCATAATTCC
TAGGTTTTAACAAGGTAAATATACTCCATAACATGAAGACAATGG
Right flanking sequence: Indices 89990 -- 90489
GTGGCCCGTTTAAGCGGCAACCAACCGGCTGGTGGATACTTGTGCCGGCGCCGACCTTGGCAGAC
TGGCTGCACCAACAAGCACCACCTGATCGAGAAAGGGAATCCCAAAGGTTAGCCCGCCGCAGATA
TCAGCAAGAACAGTCGGTATGACGCGGTTTGGCTGTTCCGGAAATTGAGCTGGGTGTCCCACATT
GTTTCCATCACCACTTCCAGAAGCGGAATCTCCTCCGTCCAGGCTTTGAAGAGCAGCGAGTTGGC
GTGGCACATGGTAACGCGACACGAACCACGGGTTCACCTCCTCGCGTAGTAGGCGGTGGTATGGG
TGGCTCTGCAAGCGCCTACACACGATGGTACATGTGACAGAACTGGTCCCGACCGTTCCAGAGGA
GACTCTGGTCTATATGAGACCCCATTCGCCGGTACACTCCCCGAGTTCCCACCGATCGCTCTGTT
CCTGAATTGATTATCTGTTCTGACCTTGTTCGTGAAGTTGAGATC
Found at i:97745 original size:15 final size:15
Alignment explanation
Indices: 97725--97757 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
97715 CCCCTTAGTG
97725 CTCGCTTTCCTACTT
1 CTCGCTTTCCTACTT
97740 CTCGCTTTCCTACTT
1 CTCGCTTTCCTACTT
97755 CTC
1 CTC
97758 TACCACGTCC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.06, C:0.42, G:0.06, T:0.45
Consensus pattern (15 bp):
CTCGCTTTCCTACTT
Left flanking sequence: Indices 97225 -- 97724
TAAGTGGATCTCGGGGATTAGCCCCAGTTCAACGAAACATCCCGACTTTCCCCCGGGCCGCCTGG
TTCCATCGCGTGGTCCTGCAAGGCAATGCACACCGAGAGGTCGTACGTAAGAAGGTTATCTATCG
GGAAGTGATCCCTCGAGTCGTGACACAAAGCCGGTCCCGGCAGACACGAATGCCAGGCTAAAATG
AAACGGTGCGGGGGCAGTGTCCCCCCCATCCCCCACTTGGTCAAGAAGTTCTTGGTTCAAACGGT
CCTGCCAAGAATTGCTCTTTTTTCACTGGCTGGATCCCCCACGCTAGTCTATTTGCAGCCACGGA
ATAATTTTGCGCAGGTGAGATTCATGTACGCTGATAAGAAGAACAAACGTGAACAGACGATAGAA
AGCAATCAGCGGCAACAGAAGGGTATCATGGGGTACAATCTGGGATGCGCAGCCACAGTTATCCT
TGGCAGCGCTATCGCTTATTTATTCCACGATTTCGCCCCTTAGTG
Right flanking sequence: Indices 97758 -- 98257
TACCACGTCCTCCACGGTTCTGACCGGGTGACAACGGGTGGTATTGTACGTAGCCCGGAGATCAT
GTCAAGAATGCATACACTAACCGGGAGGGGAAACCCGATGGAAACGGGAACAAGGGCTATTCAGG
GGCAAACATCATACGATTCTGGGTCTCACATGCTCTGCCACGGTTGCCACACACTTCCCCCACCC
CGTCTCCCTCCTTATATCACGCTTCAGCCCCCCCACCCGCACGCTGTCTGCACCAGTTGACTCAG
GTTGCGAGCCCGCGGAGCCAACGTCCATGCTTATCGGCCAATCACCCGTCACGATAACACATGCA
CCGGCTCATGGGAGACTACGAGACTAGTTAATAAGAACGGCTATCGCAGCCGAAACGACGACATG
GACGACTTGGCCGTCAACGATCTCTGGAAAATATTCAGGGTGGCCCGTCATACCCATATGCACCA
ACCTCGGCTCGAAAACATGGCCCGTCGGATGATGTTCCTAAAACA
Found at i:100621 original size:18 final size:18
Alignment explanation
Indices: 100586--100636 Score: 61
Period size: 18 Copynumber: 2.9 Consensus size: 18
100576 TTCTCTACCC
*
100586 ACTACTTT-T-CCGCCCT
1 ACTACTTTCTCCCTCCCT
100602 ACTACTTTCTCCCTCCCT
1 ACTACTTTCTCCCTCCCT
* *
100620 ACTACTCTCTCCTTCCC
1 ACTACTTTCTCCCTCCC
100637 CCACTACTCT
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
16 8 0.27
17 1 0.03
18 21 0.70
ACGTcount: A:0.12, C:0.49, G:0.02, T:0.37
Consensus pattern (18 bp):
ACTACTTTCTCCCTCCCT
Left flanking sequence: Indices 100086 -- 100585
CACTTCCCCGCACCCCAAATAAGGTTCGCCAGATCGATTACGTATCGGGTGGTTTCAGATATACG
GTGAAACGTGGTTTCAAACACTGGCTACGTTGACGGCGTGCGGTCTGACGCCGCCCCAAGGTCCT
GATCTGGTAATTGCGGCGTGCTCCTGCCCAATACGACGTCGGAGACCATGCAGCGCACCCCATTG
GGGCTATCGTGACAAAGCTACGTCCTAGACGAGCTACAATCTCTAACCACTTCTCTTACATTTAC
ATAAGCCGGCTCGGCAGCCGGTGATGCAGACATTGTGTCGGGCGGTCCACCGTCAAGCAGTGGGT
GAAGCTATTCCGCTGGTGTACCCACCAATGGCCTCGTGCCACCACGTTTATGCCTCGTCACCACT
CACCCCCACCCGTAACCACCAATCACCAATTATGTCCTCTCATAACCCCACTACCTCCACTTTCT
TCCAAACTATTGCTACATACCCGCTATCGACGCTATTCTCTACCC
Right flanking sequence: Indices 100637 -- 101136
CCACTACTCTTGATCTGCACTCGCCTACGATCACAATCTCGCTCAGTTGCCTTCCGGACTAGCCT
CTCCGAAGCTCCGCGCTAAGAATCAGGCAACACGTACGACAGCAAGGTAAGTTTAGGCGGCCTGT
CAGAGCAACCCAGAACCCCCACCACCCCACCGTAGCACCCACCCCACTCGCTGCCCACCTCTGGC
TCGCTGTCTCCTACCCCGTATCCCCCACTATCCCCCACCTTTTTTCTCGTTTAGCCCTAGTCCAC
CACCCTGACCCACTCTGACCCACCTCCAGATCACCCACCCACAGAAGACCCACCAAAAAAAAACA
CCGTAGCTACAGACTAGACCCCCAATTACCCCAGTAACCCGCCAGCCCGCTCCCACCTCCACCCG
CGGACCCCCCATACACGCTTCCGGTTTCTCGCACTACGTGTCCCACCCAGAAATTTTTCACAGAT
CACCATACCAACCCCACCATGAGTGTCCTTCCTGGCGACGTGCAC
Found at i:100644 original size:19 final size:18
Alignment explanation
Indices: 100602--100646 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
100592 TTTCCGCCCT
* *
100602 ACTACTTTCTCCCTCCCT
1 ACTACTCTCTCCCTCCCC
*
100620 ACTACTCTCTCCTTCCCCC
1 ACTACTCTCTCCCT-CCCC
100639 ACTACTCT
1 ACTACTCT
100647 TGATCTGCAC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
18 12 0.52
19 11 0.48
ACGTcount: A:0.13, C:0.51, G:0.00, T:0.36
Consensus pattern (18 bp):
ACTACTCTCTCCCTCCCC
Left flanking sequence: Indices 100102 -- 100601
AAATAAGGTTCGCCAGATCGATTACGTATCGGGTGGTTTCAGATATACGGTGAAACGTGGTTTCA
AACACTGGCTACGTTGACGGCGTGCGGTCTGACGCCGCCCCAAGGTCCTGATCTGGTAATTGCGG
CGTGCTCCTGCCCAATACGACGTCGGAGACCATGCAGCGCACCCCATTGGGGCTATCGTGACAAA
GCTACGTCCTAGACGAGCTACAATCTCTAACCACTTCTCTTACATTTACATAAGCCGGCTCGGCA
GCCGGTGATGCAGACATTGTGTCGGGCGGTCCACCGTCAAGCAGTGGGTGAAGCTATTCCGCTGG
TGTACCCACCAATGGCCTCGTGCCACCACGTTTATGCCTCGTCACCACTCACCCCCACCCGTAAC
CACCAATCACCAATTATGTCCTCTCATAACCCCACTACCTCCACTTTCTTCCAAACTATTGCTAC
ATACCCGCTATCGACGCTATTCTCTACCCACTACTTTTCCGCCCT
Right flanking sequence: Indices 100647 -- 101146
TGATCTGCACTCGCCTACGATCACAATCTCGCTCAGTTGCCTTCCGGACTAGCCTCTCCGAAGCT
CCGCGCTAAGAATCAGGCAACACGTACGACAGCAAGGTAAGTTTAGGCGGCCTGTCAGAGCAACC
CAGAACCCCCACCACCCCACCGTAGCACCCACCCCACTCGCTGCCCACCTCTGGCTCGCTGTCTC
CTACCCCGTATCCCCCACTATCCCCCACCTTTTTTCTCGTTTAGCCCTAGTCCACCACCCTGACC
CACTCTGACCCACCTCCAGATCACCCACCCACAGAAGACCCACCAAAAAAAAACACCGTAGCTAC
AGACTAGACCCCCAATTACCCCAGTAACCCGCCAGCCCGCTCCCACCTCCACCCGCGGACCCCCC
ATACACGCTTCCGGTTTCTCGCACTACGTGTCCCACCCAGAAATTTTTCACAGATCACCATACCA
ACCCCACCATGAGTGTCCTTCCTGGCGACGTGCACGCGCTGCTTC
Found at i:109556 original size:16 final size:16
Alignment explanation
Indices: 109535--109565 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
109525 TGACTCTTTT
109535 CTTCGCCCACCACGTA
1 CTTCGCCCACCACGTA
109551 CTTCGCCCACCACGT
1 CTTCGCCCACCACGT
109566 TGTTCCCTTC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.16, C:0.52, G:0.13, T:0.19
Consensus pattern (16 bp):
CTTCGCCCACCACGTA
Left flanking sequence: Indices 109035 -- 109534
CCGTCGATGTCCTCTGCGATCTTGATCAAGTCGCGGTACTTGGAGCCCACGAGGTCGTAGAGCTC
GGCCAGGGCCGCTGCGATTTTGGATTCGTACTGGTGGGACACGTCGCGGATCTCGCCAATCAGGT
ACTGGCTGAAGAGCTCGTCGACGCTGAGGGCGTCCACTGCTTCGAGCGTCGGAGCCATGGTGTGC
TGTCGGTGTGCTGTGTGCGCGTCTGAAAAATTAGAAGGGACGGTGGAGGGGAAGATAGGGGCGGT
GGGAAGAGAGATGGGAGGCGAGTGGGATGGGGTGGGGTGAGTTATGTTGGGAAGAGGGGTCAGAA
TGAGATATGGTGCTGGCTTGGCTCAATTGGGTCGGTCTGTGAGTGTAGGTGTTACTATGATACGA
CTATTGTGTATACGTATAGTACCCAAAATGGTGAGTTTTGGTATTTGCGTCCCAGGGTAGAAGAA
ATTCTAGTCTCTCCTCAACACTCTTTACATCCTAGTGACTCTTTT
Right flanking sequence: Indices 109566 -- 110065
TGTTCCCTTCCTACCACCTTGCTCCTTCCACCTTGCCTCCGCCGCACGCGAAATTTACGCACCTC
ACCAGCACCTCCTCCACCTCCCAACCACGATGACGGAACAGGCGACTCCCGGAGACTTCCAGCCA
GAGGAGTGGACGGTGCTGCTGAACGAAGCACTCCAGATCTACATCACCGACGGCACCGGCGCCAC
CCCCGTGGCCCCGCAATTCACCTACCCCATTTTTGGCGATGCCGAGACCATCTACGGGTACAAGG
GGCTCGTGATCTTTTTGTGCTTTGACCACTACACGTTCTACCCGTTTTTGAACGTCAAGTACACC
GCCAAGCTCGATGCGGACGACGTCATTGACGTGAAACAGACCATGCTCGAGTACCTTCCCCAGGA
AACGGTGTTCAAGGACGAGGCAGCGTGGCAGGATGCAGTGGAGGAGGAGAAGAAGACGTACCAGC
TCCCAGGCTCCGTGGCCGCGAGCTTCACCGAGGGCGACGACGCGT
Found at i:112175 original size:19 final size:20
Alignment explanation
Indices: 112136--112178 Score: 61
Period size: 19 Copynumber: 2.2 Consensus size: 20
112126 TTTTCTACAA
*
112136 TTTCTACCACATTTTAAAAT
1 TTTCTACCACATTTCAAAAT
*
112156 TTTCTA-CACATTTCATAAT
1 TTTCTACCACATTTCAAAAT
112175 TTTC
1 TTTC
112179 ATGCATTTTG
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 15 0.71
20 6 0.29
ACGTcount: A:0.30, C:0.21, G:0.00, T:0.49
Consensus pattern (20 bp):
TTTCTACCACATTTCAAAAT
Left flanking sequence: Indices 111636 -- 112135
CGCAAGTGGTACATAGGGTTTCAACGGAAGGTAGAGAGAGTACGCACTCCTCGGTGCCTTTTGAC
TACACCCAATACCTATACACAACCTCGGTAATGTTTTGCCCGCTTGACCAGGGGTGCCAGGCTAT
AACTCAACGCTGCGGCTGTCAGCCGAATGTGGGGATTAGATCATCTTGCACCCTTGTACTTTCGC
GTCAAGTTCGGGTTACGTCATGGTGAGTGGTTCCAAGGAACAACAATAGATGGTCGCGTTTTGTG
ACGAGCGTCTGTTTTGGTTTCAAACAATCGTGTTCCTAGCGGGCTACGGGGCTTTGCTAGCATGG
TGTCGTACTGCATCTGAGTTTTCGGTTGGTGGTTCTGGTGAAACGGACGAAGCGTAATGGAGGGA
AGCGTGGTGTTGACAACAAAACGAGTTCATTGAAACGCTTAATGTGTTCACATAAGAAATCAGGA
ATATTCGGTAGTTCCTATCACAACGTTTTCGGTTATTTTCTACAA
Right flanking sequence: Indices 112179 -- 112678
ATGCATTTTGTGGATGCCTCCACTTTCAAAACTACTGGGTATTTATGTATTCGTAAAGTCATTAA
AAGCTAGCCACGTAGGGGTGGTCTAGTAAAGCCGTGGCAGTGGCCCGGTCGCTGGCGTCCCAGAT
AAAGATCTGCGACAAAAACAGAATGAACGGCGACAGCCGCGTACAGTGCAAGTGCACCTCCAACG
GGCGGGCCGACGGCTTGAAATGCCGCTTGTGCGCCTGGGCATTGGCCAAGTACTGGCCAAAGATC
AGCTGGTTGAGCCGGCCCTGGGCATCAAAGATTTTAAACAAAAGCGTGCGCTTGGCAGCCTTCTC
AGACAGCGTCCCCTCAAAGTTGAGCGTCAGCTTCTGGCAGCTCTTCAAGAGCTGGCGACGGTAGT
TGAGAATGGTGGCGGGCTTGGGGCACCCCAAAAGCTCAACAATGAGCCCGCACTGCTCAATCTCG
GACCGTCCGGCCAAGAGAGGCGTCCCCGCGTAGAGCTCGGCGAGC
Found at i:113994 original size:39 final size:39
Alignment explanation
Indices: 113926--114002 Score: 109
Period size: 39 Copynumber: 2.0 Consensus size: 39
113916 GCATGGGTTT
* *
113926 CGGTTCTCGAAGCGGTGGTTTGGCTAGGGTGTCTCGAAC
1 CGGTTCGCGAAGCGGTGGTTTGGCGAGGGTGTCTCGAAC
* * *
113965 CGGTTCGCGAAGGGGTGTTTTTGCGAGGGTGTCTCGAA
1 CGGTTCGCGAAGCGGTGGTTTGGCGAGGGTGTCTCGAA
114003 TGGGTGTTTT
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
39 33 1.00
ACGTcount: A:0.13, C:0.18, G:0.40, T:0.29
Consensus pattern (39 bp):
CGGTTCGCGAAGCGGTGGTTTGGCGAGGGTGTCTCGAAC
Left flanking sequence: Indices 113426 -- 113925
GAGAGCGGTGGCGGGCGCTCCACCTCGGTGTGGTTCTGGGGGCTGCGGAGCTCGACGGTGGCGTC
GTTGCTGTCGTCCAAGAGCTGGCGGTCAAACAGCCGGAGCACCCCGGCCAACAGCGTGGTCTGGG
GCGACGTGCGGGCGGTGGCAGAGAGCTGACGCAGCGGAGCCACCCGGGGAAGCCGTGGCCGCGGG
GTCTCGGGCTCGGGCGTGTTGGCGTCGCTGGCGCCGAACGAACGGCTTGTTTTGCGGGTCTGGCG
CGGAGGAGCCTGGTTCTTGAGCACGCCGTAGTCGGGTGCCTTGCGAGGCCGGGTGGGGCCTGGGT
AGAGCCGCGAGAACACGTCCAGCTCCGAGCGAGGCATCGCGGGGATCAGCTGGGACTTTTTGAGT
CTCCTGGGCGGCGGACCGCGTGGCGAGCCCGGGTACGGTGCTGGGTGGGCCACGAGCGGCGGTGC
CAACGCGGTCTGGACCTTCTTTTCGGGCGAGACCAGCATGGGTTT
Right flanking sequence: Indices 114003 -- 114502
TGGGTGTTTTCAGGGTGGGAGTGAGCGACGGAAGCGTGGACGGGTTCAACGTGGTGTTCTTGGTG
GCTGAGTTCACACTGTTGAGTGTGTTGAGTGTGCTTACCGTGTTCAGTGTGTTCAGTGTGTTCAG
TGTGTTCAGTGTGTTCAGGGTGTTTAGGGTGTTCAGTGAGCTCACTCTGTTTACCGTATTCACCG
TATTCAGCGTGTTCACTGCGTTTACCGAGTTCACCGAGTTCACCGCGTTCACTCCGTTCACTCCG
TTGGGTCCACTGGTCCCGTTGGACCCGTTCTTGCCCGAGACCCGCCGCCGGGCGGTCTTCGAAGG
CGAACTGCGCTCCTCGGGCTCAATTGACCCCTCCTTCGGCGAGGTCAGACCCCGCACGCGGGCCC
GGTAGTGGTGCATTCCCTTGCGATCGCCACTGGCACCCAGGCTCGGCGTCAGCGGAGGCAGCAGC
AGCGAGCGAGGAGTGAGCGGAGCCCTCGCGGGAGCCAACAGCCGG
Found at i:114095 original size:9 final size:9
Alignment explanation
Indices: 114081--114170 Score: 94
Period size: 9 Copynumber: 10.0 Consensus size: 9
114071 GAGTTCACAC
*
114081 TGTTGAGTG
1 TGTTCAGTG
*
114090 TGTTGAGTG
1 TGTTCAGTG
*
114099 TGCTTACCGTG
1 TG-TT-CAGTG
114110 T--TCAGTG
1 TGTTCAGTG
114117 TGTTCAGTG
1 TGTTCAGTG
114126 TGTTCAGTG
1 TGTTCAGTG
114135 TGTTCAGTG
1 TGTTCAGTG
*
114144 TGTTCAGGG
1 TGTTCAGTG
* *
114153 TGTTTAGGG
1 TGTTCAGTG
114162 TGTTCAGTG
1 TGTTCAGTG
114171 AGCTCACTCT
Statistics
Matches: 70, Mismatches: 7, Indels: 8
0.82 0.08 0.09
Matches are distributed among these distances:
7 5 0.07
8 1 0.01
9 58 0.83
10 2 0.03
11 4 0.06
ACGTcount: A:0.11, C:0.10, G:0.37, T:0.42
Consensus pattern (9 bp):
TGTTCAGTG
Left flanking sequence: Indices 113581 -- 114080
CTGACGCAGCGGAGCCACCCGGGGAAGCCGTGGCCGCGGGGTCTCGGGCTCGGGCGTGTTGGCGT
CGCTGGCGCCGAACGAACGGCTTGTTTTGCGGGTCTGGCGCGGAGGAGCCTGGTTCTTGAGCACG
CCGTAGTCGGGTGCCTTGCGAGGCCGGGTGGGGCCTGGGTAGAGCCGCGAGAACACGTCCAGCTC
CGAGCGAGGCATCGCGGGGATCAGCTGGGACTTTTTGAGTCTCCTGGGCGGCGGACCGCGTGGCG
AGCCCGGGTACGGTGCTGGGTGGGCCACGAGCGGCGGTGCCAACGCGGTCTGGACCTTCTTTTCG
GGCGAGACCAGCATGGGTTTCGGTTCTCGAAGCGGTGGTTTGGCTAGGGTGTCTCGAACCGGTTC
GCGAAGGGGTGTTTTTGCGAGGGTGTCTCGAATGGGTGTTTTCAGGGTGGGAGTGAGCGACGGAA
GCGTGGACGGGTTCAACGTGGTGTTCTTGGTGGCTGAGTTCACAC
Right flanking sequence: Indices 114171 -- 114670
AGCTCACTCTGTTTACCGTATTCACCGTATTCAGCGTGTTCACTGCGTTTACCGAGTTCACCGAG
TTCACCGCGTTCACTCCGTTCACTCCGTTGGGTCCACTGGTCCCGTTGGACCCGTTCTTGCCCGA
GACCCGCCGCCGGGCGGTCTTCGAAGGCGAACTGCGCTCCTCGGGCTCAATTGACCCCTCCTTCG
GCGAGGTCAGACCCCGCACGCGGGCCCGGTAGTGGTGCATTCCCTTGCGATCGCCACTGGCACCC
AGGCTCGGCGTCAGCGGAGGCAGCAGCAGCGAGCGAGGAGTGAGCGGAGCCCTCGCGGGAGCCAA
CAGCCGGAGCGGGTGGGCTCGCGGCTCGACCTTGGTGCGTTTGAACTCCTTTTTCTTCTGGAGCA
GCAGCGTGGTCTCCCGCATGAACCCGAAGTTGGTCGACTCCGCTAGCACTGGCGACTTGGCTGTG
CCCGGGGGCTGTGCGGGTCCGTGGCTGCTCCGGGCGATGTTGATT
Found at i:114214 original size:36 final size:35
Alignment explanation
Indices: 114174--114251 Score: 88
Period size: 36 Copynumber: 2.2 Consensus size: 35
114164 TTCAGTGAGC
* *
114174 TCACTCTGTTTACCGTA-TTCACCGTA-TTCAGCGTGT
1 TCACTC-GTTTACCG-AGTTCACCG-AGTTCACCGCGT
114210 TCACTGCGTTTACCGAGTTCACCGAGTTCACCGCGT
1 TCACT-CGTTTACCGAGTTCACCGAGTTCACCGCGT
114246 TCACTC
1 TCACTC
114252 CGTTCACTCC
Statistics
Matches: 37, Mismatches: 2, Indels: 7
0.80 0.04 0.15
Matches are distributed among these distances:
35 3 0.08
36 33 0.89
37 1 0.03
ACGTcount: A:0.17, C:0.32, G:0.18, T:0.33
Consensus pattern (35 bp):
TCACTCGTTTACCGAGTTCACCGAGTTCACCGCGT
Left flanking sequence: Indices 113674 -- 114173
GCGGGTCTGGCGCGGAGGAGCCTGGTTCTTGAGCACGCCGTAGTCGGGTGCCTTGCGAGGCCGGG
TGGGGCCTGGGTAGAGCCGCGAGAACACGTCCAGCTCCGAGCGAGGCATCGCGGGGATCAGCTGG
GACTTTTTGAGTCTCCTGGGCGGCGGACCGCGTGGCGAGCCCGGGTACGGTGCTGGGTGGGCCAC
GAGCGGCGGTGCCAACGCGGTCTGGACCTTCTTTTCGGGCGAGACCAGCATGGGTTTCGGTTCTC
GAAGCGGTGGTTTGGCTAGGGTGTCTCGAACCGGTTCGCGAAGGGGTGTTTTTGCGAGGGTGTCT
CGAATGGGTGTTTTCAGGGTGGGAGTGAGCGACGGAAGCGTGGACGGGTTCAACGTGGTGTTCTT
GGTGGCTGAGTTCACACTGTTGAGTGTGTTGAGTGTGCTTACCGTGTTCAGTGTGTTCAGTGTGT
TCAGTGTGTTCAGTGTGTTCAGGGTGTTTAGGGTGTTCAGTGAGC
Right flanking sequence: Indices 114252 -- 114751
CGTTCACTCCGTTGGGTCCACTGGTCCCGTTGGACCCGTTCTTGCCCGAGACCCGCCGCCGGGCG
GTCTTCGAAGGCGAACTGCGCTCCTCGGGCTCAATTGACCCCTCCTTCGGCGAGGTCAGACCCCG
CACGCGGGCCCGGTAGTGGTGCATTCCCTTGCGATCGCCACTGGCACCCAGGCTCGGCGTCAGCG
GAGGCAGCAGCAGCGAGCGAGGAGTGAGCGGAGCCCTCGCGGGAGCCAACAGCCGGAGCGGGTGG
GCTCGCGGCTCGACCTTGGTGCGTTTGAACTCCTTTTTCTTCTGGAGCAGCAGCGTGGTCTCCCG
CATGAACCCGAAGTTGGTCGACTCCGCTAGCACTGGCGACTTGGCTGTGCCCGGGGGCTGTGCGG
GTCCGTGGCTGCTCCGGGCGATGTTGATTTGCAGGAACCGGTGGTTTAGGTCCATACCGGAGCAG
GGGTGGGTTCAGCAGCAAATATAGACGAGCAGGTGAGGCGCAACA
Found at i:114229 original size:18 final size:18
Alignment explanation
Indices: 114208--114258 Score: 57
Period size: 18 Copynumber: 2.8 Consensus size: 18
114198 TATTCAGCGT
*
114208 GTTCACTGCGTTTACCGA
1 GTTCACTGCGTTCACCGA
* * *
114226 GTTCACCGAGTTCACCGC
1 GTTCACTGCGTTCACCGA
*
114244 GTTCACTCCGTTCAC
1 GTTCACTGCGTTCAC
114259 TCCGTTGGGT
Statistics
Matches: 26, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
18 26 1.00
ACGTcount: A:0.16, C:0.35, G:0.20, T:0.29
Consensus pattern (18 bp):
GTTCACTGCGTTCACCGA
Left flanking sequence: Indices 113708 -- 114207
ACGCCGTAGTCGGGTGCCTTGCGAGGCCGGGTGGGGCCTGGGTAGAGCCGCGAGAACACGTCCAG
CTCCGAGCGAGGCATCGCGGGGATCAGCTGGGACTTTTTGAGTCTCCTGGGCGGCGGACCGCGTG
GCGAGCCCGGGTACGGTGCTGGGTGGGCCACGAGCGGCGGTGCCAACGCGGTCTGGACCTTCTTT
TCGGGCGAGACCAGCATGGGTTTCGGTTCTCGAAGCGGTGGTTTGGCTAGGGTGTCTCGAACCGG
TTCGCGAAGGGGTGTTTTTGCGAGGGTGTCTCGAATGGGTGTTTTCAGGGTGGGAGTGAGCGACG
GAAGCGTGGACGGGTTCAACGTGGTGTTCTTGGTGGCTGAGTTCACACTGTTGAGTGTGTTGAGT
GTGCTTACCGTGTTCAGTGTGTTCAGTGTGTTCAGTGTGTTCAGTGTGTTCAGGGTGTTTAGGGT
GTTCAGTGAGCTCACTCTGTTTACCGTATTCACCGTATTCAGCGT
Right flanking sequence: Indices 114259 -- 114758
TCCGTTGGGTCCACTGGTCCCGTTGGACCCGTTCTTGCCCGAGACCCGCCGCCGGGCGGTCTTCG
AAGGCGAACTGCGCTCCTCGGGCTCAATTGACCCCTCCTTCGGCGAGGTCAGACCCCGCACGCGG
GCCCGGTAGTGGTGCATTCCCTTGCGATCGCCACTGGCACCCAGGCTCGGCGTCAGCGGAGGCAG
CAGCAGCGAGCGAGGAGTGAGCGGAGCCCTCGCGGGAGCCAACAGCCGGAGCGGGTGGGCTCGCG
GCTCGACCTTGGTGCGTTTGAACTCCTTTTTCTTCTGGAGCAGCAGCGTGGTCTCCCGCATGAAC
CCGAAGTTGGTCGACTCCGCTAGCACTGGCGACTTGGCTGTGCCCGGGGGCTGTGCGGGTCCGTG
GCTGCTCCGGGCGATGTTGATTTGCAGGAACCGGTGGTTTAGGTCCATACCGGAGCAGGGGTGGG
TTCAGCAGCAAATATAGACGAGCAGGTGAGGCGCAACAGCGGTTT
Found at i:117868 original size:12 final size:12
Alignment explanation
Indices: 117853--117893 Score: 52
Period size: 12 Copynumber: 3.7 Consensus size: 12
117843 CACCGAGGCC
117853 AAGGACGAGAAG
1 AAGGACGAGAAG
117865 AAGGA--AGAA-
1 AAGGACGAGAAG
*
117874 AAGGAAGAGAAG
1 AAGGACGAGAAG
117886 AAGGACGA
1 AAGGACGA
117894 CGACGACTCC
Statistics
Matches: 25, Mismatches: 1, Indels: 6
0.78 0.03 0.19
Matches are distributed among these distances:
9 5 0.20
10 4 0.16
11 4 0.16
12 12 0.48
ACGTcount: A:0.56, C:0.05, G:0.39, T:0.00
Consensus pattern (12 bp):
AAGGACGAGAAG
Left flanking sequence: Indices 117353 -- 117852
ACGACGACGTGTTGGCGTTGTTGTTGCCGTTGGTGTCCGACACCGAGGTGCTGTTGGAGGTGCTG
CTGTTGGCGGCGTTGGCACTCGGGCACGTGTTTGTCGGCACCTGCCACGGCGACATCACGCTGAC
GATTTTGCAGACGCTCTTGGAGCGTGACTTCAACGCGTTGGCCAACAAATACATCAAGTTCATGC
TGCTTGGGTTGGGGCTCTTGTACATGCTGAAGACCGAGGCGGTGGAGGACGTGTTGGAGACCATC
GACGCCATCGAGCACCCCATCGCCAAGACCCTCAAGGTGTTGGTCAACATCTGTGCCTACGCGGG
CACCGGCAACGTGTTGCAGATCCAGCTGTTGTTGCAGATGTGCACCGCGCGCCCGAAGGAGGCGG
CGAAGCCGGCGGAGGACGACGACGAGCCCGCGGACGCGAAACCCGACCCGGTGCTTGGTGACGGC
GACGTCGAGATGGCCGACGCCGACGCCCCCGAGCCCACCGAGGCC
Right flanking sequence: Indices 117894 -- 118393
CGACGACTCCGACGACGACTCCGAAGAAGAGCTCTACCAGGGCATCGCCGTGCTCGGGCTCGCGC
TCATCGCCATGGGCGAGGACATCGGCCAGGACATGCTGTTGCGCCACTTTGCCCACCTCATGCAC
TACGGCAACCCCCTCATCAAGCGCGCGGTGCCGCTTGCCATGGGCCTTGTGCTGGCGCTGAACCC
GCAGATGAAGGTGTTTGACACGTTGCTGCGGTACTCGCACGACCCCGACCTCGAGGTGGCCCAGA
ACGCCATCTACCTGATGGGGTTGGTGGGTGCGGGCACCAACAACGCCCGGTTGGCGCAGTTGTTG
CGCCAGTTGGCGCTGTACTACGTCAAGCTGCCCGACTCGTTGTTTATGGTGCGGATTGCCCAGGG
GCTCTTGCACATGGGCAAGGGCACGCTCACGCTCAACCCGTTCAACTGCGAGCGGCTGATTCTCT
CCAAGGTGCTGTTGGCGTCGTTGCTCACCATCCTGGTGGCGCTCT
Found at i:117906 original size:12 final size:12
Alignment explanation
Indices: 117891--117917 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
117881 AGAAGAAGGA
117891 CGACGACGACTC
1 CGACGACGACTC
117903 CGACGACGACTC
1 CGACGACGACTC
117915 CGA
1 CGA
117918 AGAAGAGCTC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.26, C:0.41, G:0.26, T:0.07
Consensus pattern (12 bp):
CGACGACGACTC
Left flanking sequence: Indices 117391 -- 117890
GACACCGAGGTGCTGTTGGAGGTGCTGCTGTTGGCGGCGTTGGCACTCGGGCACGTGTTTGTCGG
CACCTGCCACGGCGACATCACGCTGACGATTTTGCAGACGCTCTTGGAGCGTGACTTCAACGCGT
TGGCCAACAAATACATCAAGTTCATGCTGCTTGGGTTGGGGCTCTTGTACATGCTGAAGACCGAG
GCGGTGGAGGACGTGTTGGAGACCATCGACGCCATCGAGCACCCCATCGCCAAGACCCTCAAGGT
GTTGGTCAACATCTGTGCCTACGCGGGCACCGGCAACGTGTTGCAGATCCAGCTGTTGTTGCAGA
TGTGCACCGCGCGCCCGAAGGAGGCGGCGAAGCCGGCGGAGGACGACGACGAGCCCGCGGACGCG
AAACCCGACCCGGTGCTTGGTGACGGCGACGTCGAGATGGCCGACGCCGACGCCCCCGAGCCCAC
CGAGGCCAAGGACGAGAAGAAGGAAGAAAAGGAAGAGAAGAAGGA
Right flanking sequence: Indices 117918 -- 118417
AGAAGAGCTCTACCAGGGCATCGCCGTGCTCGGGCTCGCGCTCATCGCCATGGGCGAGGACATCG
GCCAGGACATGCTGTTGCGCCACTTTGCCCACCTCATGCACTACGGCAACCCCCTCATCAAGCGC
GCGGTGCCGCTTGCCATGGGCCTTGTGCTGGCGCTGAACCCGCAGATGAAGGTGTTTGACACGTT
GCTGCGGTACTCGCACGACCCCGACCTCGAGGTGGCCCAGAACGCCATCTACCTGATGGGGTTGG
TGGGTGCGGGCACCAACAACGCCCGGTTGGCGCAGTTGTTGCGCCAGTTGGCGCTGTACTACGTC
AAGCTGCCCGACTCGTTGTTTATGGTGCGGATTGCCCAGGGGCTCTTGCACATGGGCAAGGGCAC
GCTCACGCTCAACCCGTTCAACTGCGAGCGGCTGATTCTCTCCAAGGTGCTGTTGGCGTCGTTGC
TCACCATCCTGGTGGCGCTCTTGGACCCCAAGCTGTTTGTGTTGT
Found at i:118824 original size:11 final size:11
Alignment explanation
Indices: 118808--118840 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
118798 AGTGGTGGAG
118808 GGTGCACTGGT
1 GGTGCACTGGT
118819 GGTGCACTGGT
1 GGTGCACTGGT
*
118830 GGTGTACTGGT
1 GGTGCACTGGT
118841 ATTGAGGTGG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.09, C:0.15, G:0.45, T:0.30
Consensus pattern (11 bp):
GGTGCACTGGT
Left flanking sequence: Indices 118308 -- 118807
GCTCACGCTCAACCCGTTCAACTGCGAGCGGCTGATTCTCTCCAAGGTGCTGTTGGCGTCGTTGC
TCACCATCCTGGTGGCGCTCTTGGACCCCAAGCTGTTTGTGTTGTCGGACGCGGCCGGCGAGACC
TCGCACGAGGTGTTGTACTACTTGTGTCCCGCGATCAAGCCGCGGATGCTCATCACCGTGGACGA
GGAGTTGAATCCCGTCAAGGTGAACGTGCGGGTGGGCCAGCTGGTGGACGTGGTGGGCCAGGCAG
GCAAGCCCAAGACCATCACCGGGTGGGTGACCCAGCTGACGCCCGTGTTGCTCAACTACGGCGAG
CGGGCGGAGTTGGAGAACGACGAGTGGTTGGCGTTGTCGCACTCGTTGGAGGGGGTGGTGATTTT
GAAGAAGAACCCGGAGTACGAGGAGGCGTAACCGCCATGACTGATGAACGCGTATACATAATTGA
TAAAGAAGGTATAGAAGGGGTGAACGTGTGGTTGTAGTGGTGGAG
Right flanking sequence: Indices 118841 -- 119340
ATTGAGGTGGTTATAGTGGTGGTTATAGTGGTGGATATTGTGGGTGGATGTAGTGGGTGGTTAGA
GTGGGTGGTCAGAGTGGGTGGTGGTTATAAAAAGTGGGGGTTCAAATGGCTTGCAAATGGTGGGT
TTGAATTTCAGCAGTCGCACCCGTCGTATTTGGGTTGTGTTAGATGACTAGTCGCAGTTGACTCA
CGCGATATCTGCGTGGTAGACTAGTGAACTAATGGGAAACCAACGTCCAGAGAATTAAAAAGGCG
ACTGGGTGTTTGTGGCCAGGCATTGGGACGTTGTTCCATTCGAACCACCTTTCCGATCCCATTCC
CCGGATTGTCTCCACGAAAAAGATTTGAGCTATGACGTCAAATAATACGAGCGGTCGGAATGACG
TGGGGACGACAAAACCTTATTATAACACATATATAAACCTTCCATTTGGGACATCCATAAATCAA
CACCCTACTTTCATTTCCTATGGGCAACACAACTTCTAGACAACG
Found at i:118863 original size:12 final size:13
Alignment explanation
Indices: 118846--118927 Score: 87
Period size: 13 Copynumber: 6.5 Consensus size: 13
118836 CTGGTATTGA
118846 GGTGGTTATAGT-
1 GGTGGTTATAGTG
118858 GGTGGTTATAGT-
1 GGTGGTTATAGTG
* *
118870 GGTGGATATTGTG
1 GGTGGTTATAGTG
* *
118883 GGTGGATGTAGTG
1 GGTGGTTATAGTG
*
118896 GGTGGTTAGAGTG
1 GGTGGTTATAGTG
* *
118909 GGTGGTCAGAGTG
1 GGTGGTTATAGTG
118922 GGTGGT
1 GGTGGT
118928 GGTTATAAAA
Statistics
Matches: 61, Mismatches: 8, Indels: 1
0.87 0.11 0.01
Matches are distributed among these distances:
12 22 0.36
13 39 0.64
ACGTcount: A:0.15, C:0.01, G:0.50, T:0.34
Consensus pattern (13 bp):
GGTGGTTATAGTG
Left flanking sequence: Indices 118346 -- 118845
TCTCCAAGGTGCTGTTGGCGTCGTTGCTCACCATCCTGGTGGCGCTCTTGGACCCCAAGCTGTTT
GTGTTGTCGGACGCGGCCGGCGAGACCTCGCACGAGGTGTTGTACTACTTGTGTCCCGCGATCAA
GCCGCGGATGCTCATCACCGTGGACGAGGAGTTGAATCCCGTCAAGGTGAACGTGCGGGTGGGCC
AGCTGGTGGACGTGGTGGGCCAGGCAGGCAAGCCCAAGACCATCACCGGGTGGGTGACCCAGCTG
ACGCCCGTGTTGCTCAACTACGGCGAGCGGGCGGAGTTGGAGAACGACGAGTGGTTGGCGTTGTC
GCACTCGTTGGAGGGGGTGGTGATTTTGAAGAAGAACCCGGAGTACGAGGAGGCGTAACCGCCAT
GACTGATGAACGCGTATACATAATTGATAAAGAAGGTATAGAAGGGGTGAACGTGTGGTTGTAGT
GGTGGAGGGTGCACTGGTGGTGCACTGGTGGTGTACTGGTATTGA
Right flanking sequence: Indices 118928 -- 119427
GGTTATAAAAAGTGGGGGTTCAAATGGCTTGCAAATGGTGGGTTTGAATTTCAGCAGTCGCACCC
GTCGTATTTGGGTTGTGTTAGATGACTAGTCGCAGTTGACTCACGCGATATCTGCGTGGTAGACT
AGTGAACTAATGGGAAACCAACGTCCAGAGAATTAAAAAGGCGACTGGGTGTTTGTGGCCAGGCA
TTGGGACGTTGTTCCATTCGAACCACCTTTCCGATCCCATTCCCCGGATTGTCTCCACGAAAAAG
ATTTGAGCTATGACGTCAAATAATACGAGCGGTCGGAATGACGTGGGGACGACAAAACCTTATTA
TAACACATATATAAACCTTCCATTTGGGACATCCATAAATCAACACCCTACTTTCATTTCCTATG
GGCAACACAACTTCTAGACAACGCAGACGCGAGCGCTCTCTGAGCTACAGTAAGTCGACCACGGG
CCGGTCCCGGTACAGTGGCGGTGCTGGAGGCTTTTTTGGCGGGTT
Found at i:119479 original size:21 final size:22
Alignment explanation
Indices: 119431--119493 Score: 65
Period size: 21 Copynumber: 2.8 Consensus size: 22
119421 GCGGGTTCGG
* *
119431 TGGTGGTGACGGTGGTGGAGGA
1 TGGTGGTGGCGGCGGTGGAGGA
* *
119453 T-ATGGTGGCGGCGGTGGAGATGG
1 TGGTGGTGGCGGCGGTGGAG--GA
119476 TGGTGGTGGCGGCGGTGG
1 TGGTGGTGGCGGCGGTGG
119494 TTGCGGAGGC
Statistics
Matches: 33, Mismatches: 5, Indels: 4
0.79 0.12 0.10
Matches are distributed among these distances:
21 15 0.45
22 1 0.03
23 2 0.06
24 15 0.45
ACGTcount: A:0.10, C:0.08, G:0.60, T:0.22
Consensus pattern (22 bp):
TGGTGGTGGCGGCGGTGGAGGA
Left flanking sequence: Indices 118931 -- 119430
TATAAAAAGTGGGGGTTCAAATGGCTTGCAAATGGTGGGTTTGAATTTCAGCAGTCGCACCCGTC
GTATTTGGGTTGTGTTAGATGACTAGTCGCAGTTGACTCACGCGATATCTGCGTGGTAGACTAGT
GAACTAATGGGAAACCAACGTCCAGAGAATTAAAAAGGCGACTGGGTGTTTGTGGCCAGGCATTG
GGACGTTGTTCCATTCGAACCACCTTTCCGATCCCATTCCCCGGATTGTCTCCACGAAAAAGATT
TGAGCTATGACGTCAAATAATACGAGCGGTCGGAATGACGTGGGGACGACAAAACCTTATTATAA
CACATATATAAACCTTCCATTTGGGACATCCATAAATCAACACCCTACTTTCATTTCCTATGGGC
AACACAACTTCTAGACAACGCAGACGCGAGCGCTCTCTGAGCTACAGTAAGTCGACCACGGGCCG
GTCCCGGTACAGTGGCGGTGCTGGAGGCTTTTTTGGCGGGTTCGG
Right flanking sequence: Indices 119494 -- 119993
TTGCGGAGGCGGAGGCGGAGACGGCGGCGGCGGCGGCGGCGGCTGTTGATGATAACAGGTTGAGA
TTATGTATTAATGAAAATTGTGAGCATATGTGGGATTGATGTAGGAGTCGGGCCTTGGGCGTACT
AAAAGTACAGTTTAAGTGGAAGCAGATCTAACCGTAGATTCAATCTCCGCGGTCCGACCAAGTTA
GTTCTAACCGGTGACTAAATGACCGCAATACGAACCCCAGCCGTTAAACTACCACCCTGAAATAC
CACTCTTCTACCTTCAATTGCTCAATTAAACCGACGCACGCTTTCTCACACCCCGTCAACCCCAC
CTACGGTTCCGGGACCTTTGCCACCAATCGTGCTCACCACGTCTGGACCACAAAAATACCACTCT
ACCACAGCACACCACACCAACATGTCACCAGCAACACCACCACACCTGCTATTGCCACCTTCTTC
ACCCCACACCCAACTTCTCACCCACTACCCACCTTATCGCCCTTG
Found at i:119536 original size:12 final size:12
Alignment explanation
Indices: 119496--119535 Score: 53
Period size: 12 Copynumber: 3.3 Consensus size: 12
119486 GGCGGTGGTT
*
119496 GCGGAGGCGGAG
1 GCGGAGGCGGCG
*
119508 GCGGAGACGGCG
1 GCGGAGGCGGCG
*
119520 GCGGCGGCGGCG
1 GCGGAGGCGGCG
119532 GCGG
1 GCGG
119536 CTGTTGATGA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
12 24 1.00
ACGTcount: A:0.10, C:0.25, G:0.65, T:0.00
Consensus pattern (12 bp):
GCGGAGGCGGCG
Left flanking sequence: Indices 118996 -- 119495
GTATTTGGGTTGTGTTAGATGACTAGTCGCAGTTGACTCACGCGATATCTGCGTGGTAGACTAGT
GAACTAATGGGAAACCAACGTCCAGAGAATTAAAAAGGCGACTGGGTGTTTGTGGCCAGGCATTG
GGACGTTGTTCCATTCGAACCACCTTTCCGATCCCATTCCCCGGATTGTCTCCACGAAAAAGATT
TGAGCTATGACGTCAAATAATACGAGCGGTCGGAATGACGTGGGGACGACAAAACCTTATTATAA
CACATATATAAACCTTCCATTTGGGACATCCATAAATCAACACCCTACTTTCATTTCCTATGGGC
AACACAACTTCTAGACAACGCAGACGCGAGCGCTCTCTGAGCTACAGTAAGTCGACCACGGGCCG
GTCCCGGTACAGTGGCGGTGCTGGAGGCTTTTTTGGCGGGTTCGGTGGTGGTGACGGTGGTGGAG
GATATGGTGGCGGCGGTGGAGATGGTGGTGGTGGCGGCGGTGGTT
Right flanking sequence: Indices 119536 -- 120035
CTGTTGATGATAACAGGTTGAGATTATGTATTAATGAAAATTGTGAGCATATGTGGGATTGATGT
AGGAGTCGGGCCTTGGGCGTACTAAAAGTACAGTTTAAGTGGAAGCAGATCTAACCGTAGATTCA
ATCTCCGCGGTCCGACCAAGTTAGTTCTAACCGGTGACTAAATGACCGCAATACGAACCCCAGCC
GTTAAACTACCACCCTGAAATACCACTCTTCTACCTTCAATTGCTCAATTAAACCGACGCACGCT
TTCTCACACCCCGTCAACCCCACCTACGGTTCCGGGACCTTTGCCACCAATCGTGCTCACCACGT
CTGGACCACAAAAATACCACTCTACCACAGCACACCACACCAACATGTCACCAGCAACACCACCA
CACCTGCTATTGCCACCTTCTTCACCCCACACCCAACTTCTCACCCACTACCCACCTTATCGCCC
TTGCAGCAACGCGCGCTCGACACTTAAACTCCAGCACGTTTACCA
Found at i:145322 original size:30 final size:30
Alignment explanation
Indices: 145250--145325 Score: 116
Period size: 30 Copynumber: 2.5 Consensus size: 30
145240 AGGAGGAGTA
* * *
145250 GTGGTGGGCGCACTGGTCGTCGAGGGGGTG
1 GTGGTGGGAGCAGTGGTCGACGAGGGGGTG
*
145280 GTGGTGGGAGCAGTGGTGGACGAGGGGGTG
1 GTGGTGGGAGCAGTGGTCGACGAGGGGGTG
145310 GTGGTGGGAGCAGTGG
1 GTGGTGGGAGCAGTGG
145326 AGGCCGAGCT
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 42 1.00
ACGTcount: A:0.11, C:0.11, G:0.61, T:0.18
Consensus pattern (30 bp):
GTGGTGGGAGCAGTGGTCGACGAGGGGGTG
Left flanking sequence: Indices 144750 -- 145249
TGTTACCCTTGGGAGTGTACTCACACACAATGTACCAGCCATTGCCCTCAGCAGCACAATTCTTA
GCGGCACAGCCCAAGCCAAGCGACAGCTTCCACACCATCTGGGTGAAGTGCAGCGCCTTGGGGTT
GTTGTAGTCGTAGTCAGTGTTTTCGTCATACCACACCTGGACACCCTGGAGCGGGTTGGAAGGGG
ACCAGCCCATCGAGAGGTTTTCACCAAACGGGTTGTTGCTGGAGTGGGTAAGCGAGTAGTCATTG
CAGTCTTTGGCATCCACCATCTTCTTGGCATAGTCAAACGCCTCTGACGACCACGACATGGGGCA
CGCGTGGTGGTCCTTACGCTTCTCGTTGTGGAAGTCCAAGATCAGGCGGGCAAAGGTCTCGTTGA
CACCAGAAGAGCTGGCAATTTGGTCGTAGAGACCGGTGGTGACACAGCTGTCAGACAGAGTAGAG
GAAGAGGAAGAGGGGGTAGTGGAGGGGGCAGTGGTAGGAGGAGTA
Right flanking sequence: Indices 145326 -- 145825
AGGCCGAGCTGCCAGTAGGAGTACCGCTGGTACCATCAGTAGCAGCACCGGTACCCGAGTTGCCG
TCAGTGGCCGCACCAGTGCCCGAGTTGCCGTCGGTAGCAGCGCCAGTACCAGAGTTACCGTCGGT
TGCAGAACCAGTTCCAGAGTTACCACCAGTAGCCGATCCGGTGGGCTTCAGACCCGACAACGAAT
CGTCAGTGGGGGCGACCACACCGGAGCCCGTATCAGTGGGGTTACCAGTGGGGCCAGTAGGGTTA
CCAGTGGGGCCAGAGGGGTTGCCGGTAGGGTTCCCAGAGGGGTTTCCCGAGGTGTTGCCGGTGGG
CTTGGGACCTTCACCAGTGTCGGTCTCCACGGGACCAACGACACCACCGCCATTGGAGTTAGGGT
TGATCTCCACAGTCGTGGTGCAAGCACCAGTCTTGGGGCAAATAATCACCGTGGTGGTGGGATTG
CCAGGAGGAGGAATAATCTTCGTGGTACAAACTCCATCAAGCTGG
Found at i:145395 original size:30 final size:30
Alignment explanation
Indices: 145361--145476 Score: 115
Period size: 30 Copynumber: 3.9 Consensus size: 30
145351 GCTGGTACCA
*
145361 TCAGTAGCAGCACCGGTACCCGAGTTGCCG
1 TCAGTAGCAGCACCAGTACCCGAGTTGCCG
* * *
145391 TCAGTGGCCGCACCAGTGCCCGAGTTGCCG
1 TCAGTAGCAGCACCAGTACCCGAGTTGCCG
* * * *
145421 TCGGTAGCAGCGCCAGTACCAGAGTTACCG
1 TCAGTAGCAGCACCAGTACCCGAGTTGCCG
* * * * *
145451 TCGGTTGCAGAACCAGTTCCAGAGTT
1 TCAGTAGCAGCACCAGTACCCGAGTT
145477 ACCACCAGTA
Statistics
Matches: 71, Mismatches: 15, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 71 1.00
ACGTcount: A:0.20, C:0.31, G:0.30, T:0.19
Consensus pattern (30 bp):
TCAGTAGCAGCACCAGTACCCGAGTTGCCG
Left flanking sequence: Indices 144861 -- 145360
AGTGCAGCGCCTTGGGGTTGTTGTAGTCGTAGTCAGTGTTTTCGTCATACCACACCTGGACACCC
TGGAGCGGGTTGGAAGGGGACCAGCCCATCGAGAGGTTTTCACCAAACGGGTTGTTGCTGGAGTG
GGTAAGCGAGTAGTCATTGCAGTCTTTGGCATCCACCATCTTCTTGGCATAGTCAAACGCCTCTG
ACGACCACGACATGGGGCACGCGTGGTGGTCCTTACGCTTCTCGTTGTGGAAGTCCAAGATCAGG
CGGGCAAAGGTCTCGTTGACACCAGAAGAGCTGGCAATTTGGTCGTAGAGACCGGTGGTGACACA
GCTGTCAGACAGAGTAGAGGAAGAGGAAGAGGGGGTAGTGGAGGGGGCAGTGGTAGGAGGAGTAG
TGGTGGGCGCACTGGTCGTCGAGGGGGTGGTGGTGGGAGCAGTGGTGGACGAGGGGGTGGTGGTG
GGAGCAGTGGAGGCCGAGCTGCCAGTAGGAGTACCGCTGGTACCA
Right flanking sequence: Indices 145477 -- 145976
ACCACCAGTAGCCGATCCGGTGGGCTTCAGACCCGACAACGAATCGTCAGTGGGGGCGACCACAC
CGGAGCCCGTATCAGTGGGGTTACCAGTGGGGCCAGTAGGGTTACCAGTGGGGCCAGAGGGGTTG
CCGGTAGGGTTCCCAGAGGGGTTTCCCGAGGTGTTGCCGGTGGGCTTGGGACCTTCACCAGTGTC
GGTCTCCACGGGACCAACGACACCACCGCCATTGGAGTTAGGGTTGATCTCCACAGTCGTGGTGC
AAGCACCAGTCTTGGGGCAAATAATCACCGTGGTGGTGGGATTGCCAGGAGGAGGAATAATCTTC
GTGGTACAAACTCCATCAAGCTGGCAGTACACTTCGCCCTTCTTGGGAGGGTCGGTGGTGGTGGG
AGGGGACACAATCGTCGTGGTACACACAACGTTCTGGTCGTTGGTGTAGGTGACGGTTTGGGTGG
GGGGGGTCACAAACGCCCCGTTGCTGGCCTTGGAGCAGCACTTGT
Found at i:145488 original size:60 final size:60
Alignment explanation
Indices: 145356--145488 Score: 140
Period size: 60 Copynumber: 2.2 Consensus size: 60
145346 GTACCGCTGG
* * * * * *
145356 TACCATCAGTAGCAGCACCGGTACCCGAGTTGCCGTCAGTGGCCGCACCAGTGCCCGAGT
1 TACCATCAGTAGCAGCACCAGTACCAGAGTTACCGTCAGTGGCAGAACCAGTGCCAGAGT
* * * * * * *
145416 TGCCGTCGGTAGCAGCGCCAGTACCAGAGTTACCGTCGGTTGCAGAACCAGTTCCAGAGT
1 TACCATCAGTAGCAGCACCAGTACCAGAGTTACCGTCAGTGGCAGAACCAGTGCCAGAGT
*
145476 TACCACCAGTAGC
1 TACCATCAGTAGC
145489 CGATCCGGTG
Statistics
Matches: 56, Mismatches: 17, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
60 56 1.00
ACGTcount: A:0.22, C:0.32, G:0.28, T:0.18
Consensus pattern (60 bp):
TACCATCAGTAGCAGCACCAGTACCAGAGTTACCGTCAGTGGCAGAACCAGTGCCAGAGT
Left flanking sequence: Indices 144856 -- 145355
GGTGAAGTGCAGCGCCTTGGGGTTGTTGTAGTCGTAGTCAGTGTTTTCGTCATACCACACCTGGA
CACCCTGGAGCGGGTTGGAAGGGGACCAGCCCATCGAGAGGTTTTCACCAAACGGGTTGTTGCTG
GAGTGGGTAAGCGAGTAGTCATTGCAGTCTTTGGCATCCACCATCTTCTTGGCATAGTCAAACGC
CTCTGACGACCACGACATGGGGCACGCGTGGTGGTCCTTACGCTTCTCGTTGTGGAAGTCCAAGA
TCAGGCGGGCAAAGGTCTCGTTGACACCAGAAGAGCTGGCAATTTGGTCGTAGAGACCGGTGGTG
ACACAGCTGTCAGACAGAGTAGAGGAAGAGGAAGAGGGGGTAGTGGAGGGGGCAGTGGTAGGAGG
AGTAGTGGTGGGCGCACTGGTCGTCGAGGGGGTGGTGGTGGGAGCAGTGGTGGACGAGGGGGTGG
TGGTGGGAGCAGTGGAGGCCGAGCTGCCAGTAGGAGTACCGCTGG
Right flanking sequence: Indices 145489 -- 145988
CGATCCGGTGGGCTTCAGACCCGACAACGAATCGTCAGTGGGGGCGACCACACCGGAGCCCGTAT
CAGTGGGGTTACCAGTGGGGCCAGTAGGGTTACCAGTGGGGCCAGAGGGGTTGCCGGTAGGGTTC
CCAGAGGGGTTTCCCGAGGTGTTGCCGGTGGGCTTGGGACCTTCACCAGTGTCGGTCTCCACGGG
ACCAACGACACCACCGCCATTGGAGTTAGGGTTGATCTCCACAGTCGTGGTGCAAGCACCAGTCT
TGGGGCAAATAATCACCGTGGTGGTGGGATTGCCAGGAGGAGGAATAATCTTCGTGGTACAAACT
CCATCAAGCTGGCAGTACACTTCGCCCTTCTTGGGAGGGTCGGTGGTGGTGGGAGGGGACACAAT
CGTCGTGGTACACACAACGTTCTGGTCGTTGGTGTAGGTGACGGTTTGGGTGGGGGGGGTCACAA
ACGCCCCGTTGCTGGCCTTGGAGCAGCACTTGTAAATAGTGACTG
Found at i:145571 original size:12 final size:12
Alignment explanation
Indices: 145554--145594 Score: 52
Period size: 12 Copynumber: 3.7 Consensus size: 12
145544 GAGCCCGTAT
145554 CAGTGGGGTTAC
1 CAGTGGGGTTAC
145566 CAGTGGGG---C
1 CAGTGGGGTTAC
*
145575 CAGTAGGGTTAC
1 CAGTGGGGTTAC
145587 CAGTGGGG
1 CAGTGGGG
145595 CCAGAGGGGT
Statistics
Matches: 24, Mismatches: 2, Indels: 6
0.75 0.06 0.19
Matches are distributed among these distances:
9 8 0.33
12 16 0.67
ACGTcount: A:0.17, C:0.17, G:0.46, T:0.20
Consensus pattern (12 bp):
CAGTGGGGTTAC
Left flanking sequence: Indices 145054 -- 145553
TGACGACCACGACATGGGGCACGCGTGGTGGTCCTTACGCTTCTCGTTGTGGAAGTCCAAGATCA
GGCGGGCAAAGGTCTCGTTGACACCAGAAGAGCTGGCAATTTGGTCGTAGAGACCGGTGGTGACA
CAGCTGTCAGACAGAGTAGAGGAAGAGGAAGAGGGGGTAGTGGAGGGGGCAGTGGTAGGAGGAGT
AGTGGTGGGCGCACTGGTCGTCGAGGGGGTGGTGGTGGGAGCAGTGGTGGACGAGGGGGTGGTGG
TGGGAGCAGTGGAGGCCGAGCTGCCAGTAGGAGTACCGCTGGTACCATCAGTAGCAGCACCGGTA
CCCGAGTTGCCGTCAGTGGCCGCACCAGTGCCCGAGTTGCCGTCGGTAGCAGCGCCAGTACCAGA
GTTACCGTCGGTTGCAGAACCAGTTCCAGAGTTACCACCAGTAGCCGATCCGGTGGGCTTCAGAC
CCGACAACGAATCGTCAGTGGGGGCGACCACACCGGAGCCCGTAT
Right flanking sequence: Indices 145595 -- 146094
CCAGAGGGGTTGCCGGTAGGGTTCCCAGAGGGGTTTCCCGAGGTGTTGCCGGTGGGCTTGGGACC
TTCACCAGTGTCGGTCTCCACGGGACCAACGACACCACCGCCATTGGAGTTAGGGTTGATCTCCA
CAGTCGTGGTGCAAGCACCAGTCTTGGGGCAAATAATCACCGTGGTGGTGGGATTGCCAGGAGGA
GGAATAATCTTCGTGGTACAAACTCCATCAAGCTGGCAGTACACTTCGCCCTTCTTGGGAGGGTC
GGTGGTGGTGGGAGGGGACACAATCGTCGTGGTACACACAACGTTCTGGTCGTTGGTGTAGGTGA
CGGTTTGGGTGGGGGGGGTCACAAACGCCCCGTTGCTGGCCTTGGAGCAGCACTTGTAAATAGTG
ACTGTTTTCTGGGCAGCAACAGCCAGTGCAAGCAAAGCGAGAGAAAGTTTCATAACGAGTGTCGA
GCTTTATTTTGTCGTGGGACGATGGGAAATTTATATCGCCGTTAA
Found at i:145604 original size:21 final size:22
Alignment explanation
Indices: 145554--145605 Score: 83
Period size: 21 Copynumber: 2.5 Consensus size: 22
145544 GAGCCCGTAT
145554 CAGT-GGGGTTACCAGTGGGGC
1 CAGTAGGGGTTACCAGTGGGGC
145575 CAGTA-GGGTTACCAGTGGGGC
1 CAGTAGGGGTTACCAGTGGGGC
145596 CAG-AGGGGTT
1 CAGTAGGGGTT
145606 GCCGGTAGGG
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
20 1 0.03
21 28 0.97
ACGTcount: A:0.17, C:0.17, G:0.46, T:0.19
Consensus pattern (22 bp):
CAGTAGGGGTTACCAGTGGGGC
Left flanking sequence: Indices 145054 -- 145553
TGACGACCACGACATGGGGCACGCGTGGTGGTCCTTACGCTTCTCGTTGTGGAAGTCCAAGATCA
GGCGGGCAAAGGTCTCGTTGACACCAGAAGAGCTGGCAATTTGGTCGTAGAGACCGGTGGTGACA
CAGCTGTCAGACAGAGTAGAGGAAGAGGAAGAGGGGGTAGTGGAGGGGGCAGTGGTAGGAGGAGT
AGTGGTGGGCGCACTGGTCGTCGAGGGGGTGGTGGTGGGAGCAGTGGTGGACGAGGGGGTGGTGG
TGGGAGCAGTGGAGGCCGAGCTGCCAGTAGGAGTACCGCTGGTACCATCAGTAGCAGCACCGGTA
CCCGAGTTGCCGTCAGTGGCCGCACCAGTGCCCGAGTTGCCGTCGGTAGCAGCGCCAGTACCAGA
GTTACCGTCGGTTGCAGAACCAGTTCCAGAGTTACCACCAGTAGCCGATCCGGTGGGCTTCAGAC
CCGACAACGAATCGTCAGTGGGGGCGACCACACCGGAGCCCGTAT
Right flanking sequence: Indices 145606 -- 146105
GCCGGTAGGGTTCCCAGAGGGGTTTCCCGAGGTGTTGCCGGTGGGCTTGGGACCTTCACCAGTGT
CGGTCTCCACGGGACCAACGACACCACCGCCATTGGAGTTAGGGTTGATCTCCACAGTCGTGGTG
CAAGCACCAGTCTTGGGGCAAATAATCACCGTGGTGGTGGGATTGCCAGGAGGAGGAATAATCTT
CGTGGTACAAACTCCATCAAGCTGGCAGTACACTTCGCCCTTCTTGGGAGGGTCGGTGGTGGTGG
GAGGGGACACAATCGTCGTGGTACACACAACGTTCTGGTCGTTGGTGTAGGTGACGGTTTGGGTG
GGGGGGGTCACAAACGCCCCGTTGCTGGCCTTGGAGCAGCACTTGTAAATAGTGACTGTTTTCTG
GGCAGCAACAGCCAGTGCAAGCAAAGCGAGAGAAAGTTTCATAACGAGTGTCGAGCTTTATTTTG
TCGTGGGACGATGGGAAATTTATATCGCCGTTAAGAGTCTCTCAA
Found at i:148941 original size:15 final size:15
Alignment explanation
Indices: 148921--148952 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
148911 TCTACTCGGA
148921 CTTTTTCTCCTTCTT
1 CTTTTTCTCCTTCTT
*
148936 CTTTTTCTCCTTTTT
1 CTTTTTCTCCTTCTT
148951 CT
1 CT
148953 CCTTCTTTTC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (15 bp):
CTTTTTCTCCTTCTT
Left flanking sequence: Indices 148421 -- 148920
AACAGAGCGTCGTTGAGATCAAGTGGATTCTGCTCACGAGACTGGATTTGCCGGCCCAACTTGGT
GATACTGGAAATAAAATCGGTGTCATACGTCAGGGTGCCATCCATTTGGGGGTCCATACCGTCCT
TCCCTGGTGGCATAGGAGGCATGGGACCTCCGGACCCCTTGTTTTTGAGCTTCTTCGTGAGCTTT
GCGGCATCAAACTGAAGAGCACCTGGCAGCTGAGACTGGCCGTGAGCCTGGGGTTGGGGGGTGAA
CGGAGGTTGTGTGGGAGGGTTCAAAGGGAGTTGCGGTGTCTCCTTTAGCGGGGTAGTTGCCTTGG
ATATAGTCTTCCCTAGCTGGCGCTGGGTGCTTGGTTTGTTGCCCATTGTGGTCAAACTTATGATT
TTCGGAGGCTTTATGCAGCGCGAATGGTAAGCAATGTGTACCCAGAGAACCCAAACAGGGGTTCG
AATAATACAAAACAGGTTCATTATATGCAAATCTATCTACTCGGA
Right flanking sequence: Indices 148953 -- 149452
CCTTCTTTTCCTTCTTCTCCTTCTTATCGCTCTTGGACTCCTTATCACTCTTGTCTGTCTTTGAC
TTCTTCTTTTTCAGCTCCCCGCCATCTGCCGAACGCTTTTTCAGAACCACAGGCGCAGCCTCGGA
GTAGTCAGCAGCCCCATAACCCGTGGGGAAGTGGCGCATCCGGAGGTCGTCCACCTGCTCAACGT
CAACCCTTTGAACACGAGCAGCGTCAAAGTCAATTTCGGGAATGACAGCCCGCTCACGAATATTG
TAGAACCGCGAAATGGGCGCTTTGCATCGCTTGGTCAGGCCTGACTTGTCACCAGCGAGGATAGT
GTATTTGTCGGTGTCCACGTCTGCGGTCAAAAACTCCTCGTTGACAGTGAAGTTGGCGCCACCCG
AGGTGAACGACTTGGGGTTGTGTGAGAGCAGCTTAGCAGCAAACAGAACGGGAAGGGCTTTGAGC
TTGTCCATCTTAAACCCTTTAGGAGCCTTGATCAACCAAACTTCC
Found at i:148967 original size:24 final size:24
Alignment explanation
Indices: 148921--148974 Score: 72
Period size: 24 Copynumber: 2.1 Consensus size: 24
148911 TCTACTCGGA
*
148921 CTTTTTCTCCTTCTTCTTTTTCTC
1 CTTTTTCTCCTTCTTCTTCTTCTC
148945 CTTTTTCTCCTTCTTTTCCTTCTTCTC
1 CTTTTTCTCCTTC--TT-CTTCTTCTC
148972 CTT
1 CTT
148975 CTTATCGCTC
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
24 13 0.50
26 2 0.08
27 11 0.42
ACGTcount: A:0.00, C:0.35, G:0.00, T:0.65
Consensus pattern (24 bp):
CTTTTTCTCCTTCTTCTTCTTCTC
Left flanking sequence: Indices 148421 -- 148920
AACAGAGCGTCGTTGAGATCAAGTGGATTCTGCTCACGAGACTGGATTTGCCGGCCCAACTTGGT
GATACTGGAAATAAAATCGGTGTCATACGTCAGGGTGCCATCCATTTGGGGGTCCATACCGTCCT
TCCCTGGTGGCATAGGAGGCATGGGACCTCCGGACCCCTTGTTTTTGAGCTTCTTCGTGAGCTTT
GCGGCATCAAACTGAAGAGCACCTGGCAGCTGAGACTGGCCGTGAGCCTGGGGTTGGGGGGTGAA
CGGAGGTTGTGTGGGAGGGTTCAAAGGGAGTTGCGGTGTCTCCTTTAGCGGGGTAGTTGCCTTGG
ATATAGTCTTCCCTAGCTGGCGCTGGGTGCTTGGTTTGTTGCCCATTGTGGTCAAACTTATGATT
TTCGGAGGCTTTATGCAGCGCGAATGGTAAGCAATGTGTACCCAGAGAACCCAAACAGGGGTTCG
AATAATACAAAACAGGTTCATTATATGCAAATCTATCTACTCGGA
Right flanking sequence: Indices 148975 -- 149474
CTTATCGCTCTTGGACTCCTTATCACTCTTGTCTGTCTTTGACTTCTTCTTTTTCAGCTCCCCGC
CATCTGCCGAACGCTTTTTCAGAACCACAGGCGCAGCCTCGGAGTAGTCAGCAGCCCCATAACCC
GTGGGGAAGTGGCGCATCCGGAGGTCGTCCACCTGCTCAACGTCAACCCTTTGAACACGAGCAGC
GTCAAAGTCAATTTCGGGAATGACAGCCCGCTCACGAATATTGTAGAACCGCGAAATGGGCGCTT
TGCATCGCTTGGTCAGGCCTGACTTGTCACCAGCGAGGATAGTGTATTTGTCGGTGTCCACGTCT
GCGGTCAAAAACTCCTCGTTGACAGTGAAGTTGGCGCCACCCGAGGTGAACGACTTGGGGTTGTG
TGAGAGCAGCTTAGCAGCAAACAGAACGGGAAGGGCTTTGAGCTTGTCCATCTTAAACCCTTTAG
GAGCCTTGATCAACCAAACTTCCTTGTCACCAATCTTGGAGGCAA
Found at i:148975 original size:9 final size:9
Alignment explanation
Indices: 148925--148977 Score: 67
Period size: 9 Copynumber: 6.2 Consensus size: 9
148915 CTCGGACTTT
148925 TTCTCCTTC
1 TTCTCCTTC
148934 TTCT--TT-
1 TTCTCCTTC
*
148940 TTCTCCTTT
1 TTCTCCTTC
148949 TTCTCCTTC
1 TTCTCCTTC
*
148958 TTTTCCTTC
1 TTCTCCTTC
148967 TTCTCCTTC
1 TTCTCCTTC
148976 TT
1 TT
148978 ATCGCTCTTG
Statistics
Matches: 38, Mismatches: 3, Indels: 6
0.81 0.06 0.13
Matches are distributed among these distances:
6 4 0.11
7 2 0.05
8 2 0.05
9 30 0.79
ACGTcount: A:0.00, C:0.36, G:0.00, T:0.64
Consensus pattern (9 bp):
TTCTCCTTC
Left flanking sequence: Indices 148425 -- 148924
GAGCGTCGTTGAGATCAAGTGGATTCTGCTCACGAGACTGGATTTGCCGGCCCAACTTGGTGATA
CTGGAAATAAAATCGGTGTCATACGTCAGGGTGCCATCCATTTGGGGGTCCATACCGTCCTTCCC
TGGTGGCATAGGAGGCATGGGACCTCCGGACCCCTTGTTTTTGAGCTTCTTCGTGAGCTTTGCGG
CATCAAACTGAAGAGCACCTGGCAGCTGAGACTGGCCGTGAGCCTGGGGTTGGGGGGTGAACGGA
GGTTGTGTGGGAGGGTTCAAAGGGAGTTGCGGTGTCTCCTTTAGCGGGGTAGTTGCCTTGGATAT
AGTCTTCCCTAGCTGGCGCTGGGTGCTTGGTTTGTTGCCCATTGTGGTCAAACTTATGATTTTCG
GAGGCTTTATGCAGCGCGAATGGTAAGCAATGTGTACCCAGAGAACCCAAACAGGGGTTCGAATA
ATACAAAACAGGTTCATTATATGCAAATCTATCTACTCGGACTTT
Right flanking sequence: Indices 148978 -- 149477
ATCGCTCTTGGACTCCTTATCACTCTTGTCTGTCTTTGACTTCTTCTTTTTCAGCTCCCCGCCAT
CTGCCGAACGCTTTTTCAGAACCACAGGCGCAGCCTCGGAGTAGTCAGCAGCCCCATAACCCGTG
GGGAAGTGGCGCATCCGGAGGTCGTCCACCTGCTCAACGTCAACCCTTTGAACACGAGCAGCGTC
AAAGTCAATTTCGGGAATGACAGCCCGCTCACGAATATTGTAGAACCGCGAAATGGGCGCTTTGC
ATCGCTTGGTCAGGCCTGACTTGTCACCAGCGAGGATAGTGTATTTGTCGGTGTCCACGTCTGCG
GTCAAAAACTCCTCGTTGACAGTGAAGTTGGCGCCACCCGAGGTGAACGACTTGGGGTTGTGTGA
GAGCAGCTTAGCAGCAAACAGAACGGGAAGGGCTTTGAGCTTGTCCATCTTAAACCCTTTAGGAG
CCTTGATCAACCAAACTTCCTTGTCACCAATCTTGGAGGCAAGGC
Found at i:180194 original size:12 final size:12
Alignment explanation
Indices: 180156--180198 Score: 59
Period size: 12 Copynumber: 3.6 Consensus size: 12
180146 ATCTGTTGCT
*
180156 GGTGCTGTTGAG
1 GGTGTTGTTGAG
*
180168 GATGTTGTTGAG
1 GGTGTTGTTGAG
*
180180 GGTGTTGTTGGG
1 GGTGTTGTTGAG
180192 GGTGTTG
1 GGTGTTG
180199 CTGCGGCGGA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
12 27 1.00
ACGTcount: A:0.07, C:0.02, G:0.51, T:0.40
Consensus pattern (12 bp):
GGTGTTGTTGAG
Left flanking sequence: Indices 179656 -- 180155
CCGAAGAAAATTGCAATCTGAGGATAGCTATACTTTCGTATATTTCAGGAGGATCGAACGATCCG
AGGTTCTCTAAAACAATTCTTGAATGCTTACAGCCGCCTTCAATTGGCGTGGTTGGTATTCATGT
CAGGGGTAATATTGGGGCAGTGCAAGGGTAGTTACCTTTTGGGCTGGCTCAAACCTCTGACCGCC
GCACGTTTGGAGAGTCCTTACTAAATTTCGGATTCCTTATAGTTTGACGTCTACACAGCTTGCCA
ATATTAATACAATTAAATTACACCGATGAACTAAAATCTAAAGACCATCACCCTCGAGGTCCAAC
GCGAAATCGAGTCCCATATCGTACTCGTTGCCATCCAATTTCAAGTCGTCATCGTGCAACAGCAA
CACTGCATCAGGTCCGTCCATGTCCATATTGAGTAATTGGCCCATGTCATCGCCCAGAGGGTGCT
GCATCATTCCCAGCTGGAACATTTCTTGTTGCAGGATCTGTTGCT
Right flanking sequence: Indices 180199 -- 180698
CTGCGGCGGAGGTGGCTGCTGCTGCTGTTGCATATGCTGTTGTTGCTGCTGCTGCCGCTGCTGCT
GCTGCTGCTGCTGCTGCTGCTGCTGTTGCATCTGCTGCTGCATCATCATCTGGTGGTGTCGATGC
TGCTGTTGCTGTTGTTGCTGCTGCTGTTGCTGCTGTTGAAGGATCGGTGGCTGATGAGCTGCCTG
TTGAGGCATGGCCCGGGGCAAACTTTGAGGCATTCCCTGCTGCATTCCGTGCTGTAAACTTTGGG
GATTCGGAGCCTGGGTTGGAACTGGCGCAGGAACCAGCGGATTAGTTGTCACTTGCACTGGCTTA
AGCGACCAAGTAGCATCAAACTCTTTGAAATCCAAAATCTTTTCAACCTCAGACAGAGGGATGTG
ACCCACCGAGATCTCCCGGAGCTTGTCCAGCGCCAACTCCTCGAGCTCTATGGCGTCATCATAAA
CGAACAGTCCCTCCTCATTGTAGATTCGCGCATTGCAAAACATCA
Found at i:180219 original size:3 final size:3
Alignment explanation
Indices: 180213--180304 Score: 98
Period size: 3 Copynumber: 30.7 Consensus size: 3
180203 GGCGGAGGTG
* * * * *
180213 GCT GCT GCT GCT GTT GCAT -AT GCT GTT GTT GCT GCT GCT GCC GCT
1 GCT GCT GCT GCT GCT GC-T GCT GCT GCT GCT GCT GCT GCT GCT GCT
*
180258 GCT GCT GCT GCT GCT GCT GCT GCT GCT GCT GTT GCAT -CT GCT GCT
1 GCT GCT GCT GCT GCT GCT GCT GCT GCT GCT GCT GC-T GCT GCT GCT
180303 GC
1 GC
180305 ATCATCATCT
Statistics
Matches: 75, Mismatches: 10, Indels: 8
0.81 0.11 0.09
Matches are distributed among these distances:
2 2 0.03
3 71 0.95
4 2 0.03
ACGTcount: A:0.03, C:0.29, G:0.32, T:0.36
Consensus pattern (3 bp):
GCT
Left flanking sequence: Indices 179713 -- 180212
ACGATCCGAGGTTCTCTAAAACAATTCTTGAATGCTTACAGCCGCCTTCAATTGGCGTGGTTGGT
ATTCATGTCAGGGGTAATATTGGGGCAGTGCAAGGGTAGTTACCTTTTGGGCTGGCTCAAACCTC
TGACCGCCGCACGTTTGGAGAGTCCTTACTAAATTTCGGATTCCTTATAGTTTGACGTCTACACA
GCTTGCCAATATTAATACAATTAAATTACACCGATGAACTAAAATCTAAAGACCATCACCCTCGA
GGTCCAACGCGAAATCGAGTCCCATATCGTACTCGTTGCCATCCAATTTCAAGTCGTCATCGTGC
AACAGCAACACTGCATCAGGTCCGTCCATGTCCATATTGAGTAATTGGCCCATGTCATCGCCCAG
AGGGTGCTGCATCATTCCCAGCTGGAACATTTCTTGTTGCAGGATCTGTTGCTGGTGCTGTTGAG
GATGTTGTTGAGGGTGTTGTTGGGGGTGTTGCTGCGGCGGAGGTG
Right flanking sequence: Indices 180305 -- 180804
ATCATCATCTGGTGGTGTCGATGCTGCTGTTGCTGTTGTTGCTGCTGCTGTTGCTGCTGTTGAAG
GATCGGTGGCTGATGAGCTGCCTGTTGAGGCATGGCCCGGGGCAAACTTTGAGGCATTCCCTGCT
GCATTCCGTGCTGTAAACTTTGGGGATTCGGAGCCTGGGTTGGAACTGGCGCAGGAACCAGCGGA
TTAGTTGTCACTTGCACTGGCTTAAGCGACCAAGTAGCATCAAACTCTTTGAAATCCAAAATCTT
TTCAACCTCAGACAGAGGGATGTGACCCACCGAGATCTCCCGGAGCTTGTCCAGCGCCAACTCCT
CGAGCTCTATGGCGTCATCATAAACGAACAGTCCCTCCTCATTGTAGATTCGCGCATTGCAAAAC
ATCAAGTGGAGGTCCTCCATGAACTCGCGGATAGACACGTATGTACGCAGGTTGATTCGCTTGCG
CACTGTATCTAACGCAATAGGGTACTTGATAAGCACATAGTAGTC
Found at i:196009 original size:18 final size:18
Alignment explanation
Indices: 195988--196262 Score: 213
Period size: 18 Copynumber: 15.3 Consensus size: 18
195978 ACCTCTGCGG
* *
195988 AGCCCTCCACTACTCAGG
1 AGCCCTCCACTACTGAGC
*
196006 AGCCTTCCACCT-CTGAGC
1 AGCCCTCCA-CTACTGAGC
* * *
196024 AGCCCTCCACCACTCAGG
1 AGCCCTCCACTACTGAGC
*
196042 AGCCCTCTACCT-CTGAGC
1 AGCCCTCCA-CTACTGAGC
* * *
196060 AGCCCTCCACCACTCAGG
1 AGCCCTCCACTACTGAGC
196078 AGCCCTCCACCT-CTGAGC
1 AGCCCTCCA-CTACTGAGC
* * *
196096 AGCCCTCCACCACTCAGG
1 AGCCCTCCACTACTGAGC
*
196114 AGCCCTCTACCT-CTGAGC
1 AGCCCTCCA-CTACTGAGC
* * *
196132 AGCCCTCCACCACTCAGG
1 AGCCCTCCACTACTGAGC
*
196150 AGCCCTCTACCT-CTGAGC
1 AGCCCTCCA-CTACTGAGC
*
196168 AGCCCTCCACCACTGAGC
1 AGCCCTCCACTACTGAGC
* *
196186 AGCCCTCTACTTCTGAGC
1 AGCCCTCCACTACTGAGC
*
196204 AGCCCTCCACCACTGAGC
1 AGCCCTCCACTACTGAGC
* *
196222 AGCCCTCTACCT-CTGAGA
1 AGCCCTCCA-CTACTGAGC
*
196240 AGCCCTCCACCT-CTGAGG
1 AGCCCTCCA-CTACTGAGC
196258 AGCCC
1 AGCCC
196263 ACTTCCCAGT
Statistics
Matches: 200, Mismatches: 46, Indels: 22
0.75 0.17 0.08
Matches are distributed among these distances:
17 5 0.03
18 188 0.94
19 7 0.04
ACGTcount: A:0.20, C:0.47, G:0.17, T:0.17
Consensus pattern (18 bp):
AGCCCTCCACTACTGAGC
Left flanking sequence: Indices 195488 -- 195987
TGCTGGTGATGTCGACATCACTGACGACGTCGCCAACCCTTTCCAATGGACGAAGACCTTCACCG
TTCAGGCTGAGAAGAAGGCGTTGCCTTCCAAGCAGAAGCGTGGTAAGATCGAGGATGCTTTCAAC
GAGAATTTCGTGTGCTGTCTTCCCGGTACCTTCGAGATTTTGATTGCCCCCGCCTTCCCCAAGGG
TAAGTCTGCCGCCACCTCTACCATGGCTTCCACTTTCAAATACGGTGTGGAGCCTGTCAACACTT
CCCTGTTGGAGGAAGTTGACCCCTCTTCCACCAAGGCTAGCCTCGACAAGGCTTTGGGTGTTTCC
TTGAGAAAGCGCGGCCCCTTCAACTTCCGTAAGAGAAACGACAAATTGGAGGAGCAATGGTTGAA
GACTACTCAAATGATGTTGCAATACTGTTGGAGCTGTGGTTGTGAGGACCAGTCGTCTAGCTCTA
GCTCTAGCTCTTCCACCACTTCTCTGCAAAGCTCTACCTCTGCGG
Right flanking sequence: Indices 196263 -- 196762
ACTTCCCAGTGTGTTGTGACCGTCACCGAGACCTCGACTGCTCCGCCTGTCACTGTCACTATCAC
TGGTGCCACTAGATTGTTGTAAACAACTGGTACTCTCCCCTACACGACCTCAGTCGTACTCCAAT
TTTCAGTTCACTCAAATTATTTTTAGTTTACCATACCCTTTTATAATTCCGGTTTATTTTTTTTC
GAATATATATAACAGCCATTACCTAGATTTTGTTGAAACAAACCGTGGATTGTGACAGTTTTGGC
CAGTTGTATGGACGGAAACGAACGTGGCAAATTTTTCATCAAAGCAGTTACACACAATCGACTAC
TACATAAATATTTTTGGAGGACGCAATCGAATTGACCTTCAATTCTTCAGGTAACGTGATTCTCT
ATTTTTCAAAATTTTGATAAACACATCCTGAAAAGACTAAACTAAATCAGGAAATCATACAATAA
GGGTGCAAAGCCAGTCTGCCAAAGTAGTCAATGCACTGAATCAAA
Found at i:196018 original size:36 final size:36
Alignment explanation
Indices: 195974--196262 Score: 452
Period size: 36 Copynumber: 8.0 Consensus size: 36
195964 CTCTGCAAAG
* * *
195974 CTCTACCTCTGCGGAGCCCTCCACTACTCAGGAGCC
1 CTCTACCTCTGAGCAGCCCTCCACCACTCAGGAGCC
* *
196010 TTCCACCTCTGAGCAGCCCTCCACCACTCAGGAGCC
1 CTCTACCTCTGAGCAGCCCTCCACCACTCAGGAGCC
196046 CTCTACCTCTGAGCAGCCCTCCACCACTCAGGAGCC
1 CTCTACCTCTGAGCAGCCCTCCACCACTCAGGAGCC
*
196082 CTCCACCTCTGAGCAGCCCTCCACCACTCAGGAGCC
1 CTCTACCTCTGAGCAGCCCTCCACCACTCAGGAGCC
196118 CTCTACCTCTGAGCAGCCCTCCACCACTCAGGAGCC
1 CTCTACCTCTGAGCAGCCCTCCACCACTCAGGAGCC
* *
196154 CTCTACCTCTGAGCAGCCCTCCACCACTGAGCAGCC
1 CTCTACCTCTGAGCAGCCCTCCACCACTCAGGAGCC
* * *
196190 CTCTACTTCTGAGCAGCCCTCCACCACTGAGCAGCC
1 CTCTACCTCTGAGCAGCCCTCCACCACTCAGGAGCC
* * *
196226 CTCTACCTCTGAGAAGCCCTCCACCTCTGAGGAGCC
1 CTCTACCTCTGAGCAGCCCTCCACCACTCAGGAGCC
196262 C
1 C
196263 ACTTCCCAGT
Statistics
Matches: 237, Mismatches: 16, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
36 237 1.00
ACGTcount: A:0.19, C:0.46, G:0.17, T:0.17
Consensus pattern (36 bp):
CTCTACCTCTGAGCAGCCCTCCACCACTCAGGAGCC
Left flanking sequence: Indices 195474 -- 195973
GTCGCTGGTTTGGGTGCTGGTGATGTCGACATCACTGACGACGTCGCCAACCCTTTCCAATGGAC
GAAGACCTTCACCGTTCAGGCTGAGAAGAAGGCGTTGCCTTCCAAGCAGAAGCGTGGTAAGATCG
AGGATGCTTTCAACGAGAATTTCGTGTGCTGTCTTCCCGGTACCTTCGAGATTTTGATTGCCCCC
GCCTTCCCCAAGGGTAAGTCTGCCGCCACCTCTACCATGGCTTCCACTTTCAAATACGGTGTGGA
GCCTGTCAACACTTCCCTGTTGGAGGAAGTTGACCCCTCTTCCACCAAGGCTAGCCTCGACAAGG
CTTTGGGTGTTTCCTTGAGAAAGCGCGGCCCCTTCAACTTCCGTAAGAGAAACGACAAATTGGAG
GAGCAATGGTTGAAGACTACTCAAATGATGTTGCAATACTGTTGGAGCTGTGGTTGTGAGGACCA
GTCGTCTAGCTCTAGCTCTAGCTCTTCCACCACTTCTCTGCAAAG
Right flanking sequence: Indices 196263 -- 196762
ACTTCCCAGTGTGTTGTGACCGTCACCGAGACCTCGACTGCTCCGCCTGTCACTGTCACTATCAC
TGGTGCCACTAGATTGTTGTAAACAACTGGTACTCTCCCCTACACGACCTCAGTCGTACTCCAAT
TTTCAGTTCACTCAAATTATTTTTAGTTTACCATACCCTTTTATAATTCCGGTTTATTTTTTTTC
GAATATATATAACAGCCATTACCTAGATTTTGTTGAAACAAACCGTGGATTGTGACAGTTTTGGC
CAGTTGTATGGACGGAAACGAACGTGGCAAATTTTTCATCAAAGCAGTTACACACAATCGACTAC
TACATAAATATTTTTGGAGGACGCAATCGAATTGACCTTCAATTCTTCAGGTAACGTGATTCTCT
ATTTTTCAAAATTTTGATAAACACATCCTGAAAAGACTAAACTAAATCAGGAAATCATACAATAA
GGGTGCAAAGCCAGTCTGCCAAAGTAGTCAATGCACTGAATCAAA
Found at i:204551 original size:32 final size:32
Alignment explanation
Indices: 204510--204576 Score: 107
Period size: 32 Copynumber: 2.1 Consensus size: 32
204500 GATCTCGTGC
* * *
204510 AAATAGCCTCAGAGACTAAGAGACCACAGTTG
1 AAATAGCCTCAGAAACCAAGAGACCACAGCTG
204542 AAATAGCCTCAGAAACCAAGAGACCACAGCTG
1 AAATAGCCTCAGAAACCAAGAGACCACAGCTG
204574 AAA
1 AAA
204577 AGAATCACAC
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.45, C:0.24, G:0.19, T:0.12
Consensus pattern (32 bp):
AAATAGCCTCAGAAACCAAGAGACCACAGCTG
Left flanking sequence: Indices 204010 -- 204509
ATTGCTTGAGGTTGAAAGAATACCGCATTAGCCCCACAGATGTTAAATTTGGATCCACCAAAGTT
GTTTAGACAGTCATCGTTGGAACGGACATCCACTCTTTGCGAGAACAAGCTGTGTACTTAGGTGA
AATGTTGTACTTTTGTTCGGTTCTAAGAGGGTAACCTTATCGTGATCAACGAGCCCATATTTCTC
CATTGGATGCCGAGATATATGCTAACGCGACTAGTAGTATGAAGAATTTGAATCAAGAGGCTTAT
ATTGCAGGCAGGGCGAACCGGATGGTAATATGCTAACAAGGCAATACTTACGAGGTGTTAAATCA
TACGCCATTCATGAACGGGACCAACCTTTCTGGTCGAAAACATAATTTTATTGGCTCAGTTACAG
GAGAGATTCTCTAATGTTTGTTTGACTGTGAAATCTCGTGACTATTAGTGAATTGGAAATCTATG
TAAATTAAATTTTGCAATTTGGTTTTCTGTTGATTGATCTCGTGC
Right flanking sequence: Indices 204577 -- 205076
AGAATCACACCAATGATAATCGAATGGCACTGAAGTGGTATCAAACAAACTGTTGAGACCCGACC
TCGGAGTCAGAAGCCAAGGGACCGAAGGTACCGTTGGAGAGTTTCTTGTCGTTTTTAGCCATGGT
GGATTTCTTACTCAATTCGAAGGGTACGAAATGCGGTATGGAATTAGATAGGGATCCCAATAGTC
GGGAAACTCCATTCTATATAGTGGAACAATATTCAGGGATGTAAGTTGCGTTGTCGGGTTTACAT
TCCTGTAACTACCTCATAATTCGATGGCTACCGTATTGGTTGTGTGCGCAACCAGGTATATGGGA
GCCAACACAAACTTCTTACTCAATTAGATGGATGGGGTTCTCGCTTATGGACACTCCGTTGCTCT
CTCGTTTTAAGTTAACGTTCCCCATAATCAAGATTGTATAGGCGGATGAAGACAAATTATAGTTC
TCAACATTAGGTGGTCAATCCAAATTTGAATGATTTCAACTGTTT
Done.