Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: scaffold57
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 170938
ACGTcount: A:0.21, C:0.28, G:0.28, T:0.22
File 1 of 2
Found at i:12122 original size:54 final size:54
Alignment explanation
Indices: 12056--12280 Score: 369
Period size: 54 Copynumber: 4.2 Consensus size: 54
12046 AAAAGACCGC
* * *
12056 CCTTGTTCGTCTCAGTCTTCCCAGCACCAAAAGGCTTCCCAAATGCGGGTGTGT
1 CCTTGTTGGTCTCGGTCTTCCCAGCACCAAAAGGCTTCCCAAATGCGGGCGTGT
* *
12110 CCTTGTTGGTCTCGGTCTTCCCAGCACCAAAAGGCTTTCCAAATGCGGACGTGT
1 CCTTGTTGGTCTCGGTCTTCCCAGCACCAAAAGGCTTCCCAAATGCGGGCGTGT
* *
12164 CCTTGTTGGTCTCGGTCTTCCCAGCACCAAAAGGCTTTCCAAATGCAGGCGTGT
1 CCTTGTTGGTCTCGGTCTTCCCAGCACCAAAAGGCTTCCCAAATGCGGGCGTGT
* *
12218 CCTTGTTGGTCTCGGTCTTCCCAGCACCAAAAGGCTTCCCAAATGCGGGGGCGT
1 CCTTGTTGGTCTCGGTCTTCCCAGCACCAAAAGGCTTCCCAAATGCGGGCGTGT
12272 CCTTGTTGG
1 CCTTGTTGG
12281 CTTCAGTTTT
Statistics
Matches: 160, Mismatches: 11, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
54 160 1.00
ACGTcount: A:0.17, C:0.30, G:0.25, T:0.28
Consensus pattern (54 bp):
CCTTGTTGGTCTCGGTCTTCCCAGCACCAAAAGGCTTCCCAAATGCGGGCGTGT
Left flanking sequence: Indices 11556 -- 12055
AGCAGTAGCGTCGCTGGAATCGTCAGAGTCGGATCGCGGATTGGTTTCTGCGGGCTTCTGACCAA
AGGGCAGGTCGAGAGTTGGTTTCTGCCCAAAACCCTGGCCAAGCTTCTTTCCAAATCCAGCAAAA
GGGCTTTCTTTGTTATCGCTGCCAGGTGTGGCCTCCTTGGGGAAATCGGGTTTCGATTCCGGTTT
GGAACCAAAGAGAGGAGCCTGGTTGTTGAAGCTAGATTGACCAAACGGGGTGGTAGCATTTTTCT
TTTCGTCGTCCTTTTTCGTGTTCTCAGAGCTGCTTGTCTTGGGGGTAGACTCCGTTGCCTCCTGG
GGCTTCTGACCAAAGACGTAGCCAGGTTTGGCTTCAAACGCTCCCTCCTTCTTCTCCGTGGGCTT
TTGGCCAAATACAAAACCTGGCTTCTTCTCGTAGAGGTCGTCGGCGCTTTCCTTGCCGAGCGAGC
CCTCGGCCTTGCCAAAGCCCTTGGCAGGACCTCCAAAAAGACCGC
Right flanking sequence: Indices 12281 -- 12780
CTTCAGTTTTGCCAAAACCAGAGAATGCACCACCCTTCTTTTCTTCGGCCTTACCAAACGCACCC
AATGGGCTCTCCTTCTGCTCTTCCGTCTTGCCAGAGGCACCAAAAGGTTGGCCAAACTTGGGGGT
GTCCTTCGATGACTCGGTCTTGCCAAAGGCACCAAACGGATTCTCCTTCTTCTGCTCAGTCTCTC
CACCAAAGGCGTTCTCCTTCGGCGCTCCCATCTCCTCGGTACTTCCAAAAGACACTGATTTCTTC
TTCGTTTCAGTGTCAGGTTTGTCGGTCTTACCAAACAGCGCAAACGGGCTGGGTTCCGAGCTCGT
TTTGTTCTGAGCAAATTTGGCAAAGGGGCTCTCCGTGCTCTCGGCGGGCTTCTGGCCAAACGGCA
CTGGCTTCTGACCAAAGGGACTGTCCTCCTTGTTGAAAGAGCCACCAAACGGGCTCCCTTCCTTT
TTCTCGCCCATGGATCCAAAGGGGCTCCCTTCATTGTTCGATAAG
Found at i:13204 original size:33 final size:33
Alignment explanation
Indices: 13162--13265 Score: 154
Period size: 33 Copynumber: 3.2 Consensus size: 33
13152 GCCAAAGGCA
* * *
13162 CCAAAAGCGCCCTTACCCTCATCAGGCTTTGCG
1 CCAAAAGCGCTCTTGCCCTCATCAGGCTTCGCG
13195 CCAAAAGCGCTCTTGCCCTCATCAGGCTTCGCG
1 CCAAAAGCGCTCTTGCCCTCATCAGGCTTCGCG
* * *
13228 CCAAAAGCGCTCTTGCTCTCGTCAGGCTTCGCA
1 CCAAAAGCGCTCTTGCCCTCATCAGGCTTCGCG
13261 CCAAA
1 CCAAA
13266 CTTGCCAAGA
Statistics
Matches: 65, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
33 65 1.00
ACGTcount: A:0.21, C:0.38, G:0.19, T:0.21
Consensus pattern (33 bp):
CCAAAAGCGCTCTTGCCCTCATCAGGCTTCGCG
Left flanking sequence: Indices 12662 -- 13161
CAAACGGCACTGGCTTCTGACCAAAGGGACTGTCCTCCTTGTTGAAAGAGCCACCAAACGGGCTC
CCTTCCTTTTTCTCGCCCATGGATCCAAAGGGGCTCCCTTCATTGTTCGATAAGCCACCAAACGG
ACTGGCTTTACCCTGGCCCATCGCCGCAAAGCCCAGGGCACCCGAGTAGGCGCCAAAACCAGACT
TGGCCGAAGACTCTTGTGCCTTCCCAGACTCTTGGGGCTTTGCTCCAAAGGACAGGGCGCCAAAG
GCCAGCGGAGGAGCATTAGGGTCAAACTTCGACCCGCCGAGCTGGGCCGCAAACGGAGACGCGGT
GTTGGCGGTTGTCGGTTTAGCGCCAAATCCAGTGTTACCAAACCCAGCACCGCCAAACCCGCTCT
TGTTGTCCTTGTTCCCAAATCCAACGCTGCCAAACCCCTGTGAGCCTGAGTTGCCAGCAGGTTCT
GTGGTAGCCTTCGATTCAGTGGACAGTGCCAGGTTGCCAAAGGCA
Right flanking sequence: Indices 13266 -- 13765
CTTGCCAAGAGGAGCGCCAAAAGGCGAAGACGCCCGGTCGACGGTACCGCTCTGGACACCCTTGA
AAGCGTTCGCCAGGCTCAGTCCAAACGGGTTGTCGCTCTTGCCAAACGGGTTATCCTTGGGCTTT
TCTCCAAAAGCACCGAAGGGTGAGTCCTTGGGTTTCTCGCCAAAGACACCAAAGCCAGTTGGCTT
CGTTTCCTGACTACCAAACGCCAGCTGGGCCGGCTCCTTCGCTTCTACGCGCGTTTGTTGCTCGG
CCGAGCCCACTGACACCCCTCTTTTGGCCTCCAATGCGCGGATTTCTCGCTGTAGATCGGCATGG
CCTCCTTCGATGGCCTCTTTATCAAGCACAGACCAGCCATAGAGCCGCCCATCATCGAGCAAAAC
ATACAAAACGGGCACCCCGGTCACAGAGTCTTTGCCAGGCCAGGGGTCATACACCTCGCGCGTGG
TTTGCGTGGGGTCGATAAACACACCCAAACACGCGGTGTCGTCGA
Found at i:15255 original size:18 final size:18
Alignment explanation
Indices: 15221--15271 Score: 77
Period size: 18 Copynumber: 2.8 Consensus size: 18
15211 TTGAGATTTG
*
15221 CTTTATTTTCGCGTTGCC
1 CTTTATTTTCACGTTGCC
15239 C-TTATTTGTCACGTTGCC
1 CTTTATTT-TCACGTTGCC
15257 CTTTATTTTCACGTT
1 CTTTATTTTCACGTT
15272 CTTCGTGGTA
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
17 6 0.20
18 18 0.60
19 6 0.20
ACGTcount: A:0.10, C:0.25, G:0.14, T:0.51
Consensus pattern (18 bp):
CTTTATTTTCACGTTGCC
Left flanking sequence: Indices 14721 -- 15220
TTCCGGAACCATGAGCTGGGGGGGATTGGGTGTTGTTTTGGGGAGGTTGGTGGTGGTTATGATTT
TGTTGCGCAGTGCGACAGGGTGCAGAAGGGTGTGAAGGCGGAAGGAAGGGGTGAGAACGGGTAGT
TAAAGGAAGGAGAGGGGGTTTGTAGAGCAGTGTTTAGTGGATAAGGTTGTGTGGGCTTTATGAAA
AATTTGTTGGGCAATTGGGCTGGGTGGGGTTTGGTTGGGTCTTGTAGACATGCGGCTACCCACTG
GTGAGTAGTGAGAAAAGTAGGTAAGAGGCCGAGTTGGAAAGGATAAGGGTGAAAAGGAGGAATAG
GTACTCTAGAGAAGTATACGAAGACTGCGAAATGGTGGACTGTTGAGTGTTTTTGCGGTTTAGTG
GCAATTGCGCTGTGCCAAGTACGATCTAATGAAGAACAATTTGGTAACATGATTTGGGTGTGGGT
GGGTGTAAACTTTGAAGAGATGCTAAGCGGAGCTCTTGAGATTTG
Right flanking sequence: Indices 15272 -- 15771
CTTCGTGGTATTCTCTGCTTGGCCACCACCAAGTTAGACGAGCAAATAGCCACCAGCCTAAACCC
CATATAGTCCACGTAACCACCCAAAAAGATATACTTTTCACTCCTTCAAGCAACACTCAAGCTCA
TACACGCCCCCCCTAGTCCCCTCAACCAGCCATCTTCGCGCTTTCCCCACCCCGTTCTTCCCCAC
CACGCTCCACCACGTCTTTTTCACACCGCGAAATCTAACGCGTCATGGACACCGACCCGATCCAA
ATCGGGTTCTACGACCCGTTCCTGACGGCGCCCACCGCAGACTTGGAGGCAAAGTTCCCCCTCAC
CAACCTCCACTGGAAGTACCACCATCAAAAACCGGTGCAGCTGATCGCCCGTCTCCCGGTGTCCC
TCACCGAGGAGGTGCCCAAGACCCGGCCACCTCACCACCCACCAACCACAGCGGTGTACGCTCGG
ATAATGTTTGTGCGCTACGACTCTTTGGACCAGTACCGCAGTCAG
Found at i:17023 original size:18 final size:18
Alignment explanation
Indices: 16997--17048 Score: 77
Period size: 18 Copynumber: 2.9 Consensus size: 18
16987 GGTGGTCTGG
* *
16997 AGGACGCCAAAGGCTCTC
1 AGGAGGCCAAAGACTCTC
17015 AGGAGGCCAAAGACTCTC
1 AGGAGGCCAAAGACTCTC
*
17033 AGGAGTCCAAAGACTC
1 AGGAGGCCAAAGACTC
17049 GCAGACCCAG
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 31 1.00
ACGTcount: A:0.33, C:0.29, G:0.27, T:0.12
Consensus pattern (18 bp):
AGGAGGCCAAAGACTCTC
Left flanking sequence: Indices 16497 -- 16996
GTTTCTGGACTCGTTGACCGTGTACGAAGAGATAGGGGACGAGTTGGCGGGGACGGGCCATCTCG
AGCTTCCCGAGAAGCTTCTGCTCGAGCTGTACCCGCCGTTCGCTCCCTGGACCGAGCACATGCTG
GCGTTCGATACCCGGTGCCAGGTGTTTGCGTCTCAGCTGCGCTTGTTGCGGTCTCTAGCGGCCCA
GGCGGCCACTGCGTCGCTCGCAGCGATCTACGTGTCCCGGTTGTACCAGAAGTTGCTTGATTTCT
TGCAAGGGTTGGTGCAGCGGTTCCGGCTGGCCCGGGTGGCGGAGTTTGCCGTGAGACTCATAGAT
TTCTATATAGAGGGCGAGGCTGTGAGCGACGAGAACGTCGAGTTTCGGGGCGAGCTCCGGATGTT
TGAGCGGCTGCAGTACTTGGACATTGCCACGCGAGTGTTCCGCTACCCGGTGATGGGAGCCACGG
GGTGTGAGATCAGTCTAGACGACGAGGATCAAGGCGGTGGTCTGG
Right flanking sequence: Indices 17049 -- 17548
GCAGACCCAGACTGGAGACGAGAAACTGGAAGACCTGAAGGATGAAGGCGAGCTGGCTAACCCCA
TTCTCCGTGCCTCTGGTCTCACCTACCCGCCTCTCTTGAAGGCCATGGCCCTGGCCCAGACGTTC
TACGCGTGCTACGAGGGGCTCACCGAGGCGGCCATGGCTGACTTTGTCAAGTGCGGCCGCGAAAA
GACCGTTGACATCCTCCTGATTGACTTGGCGCTCATGGCGTACCAGCAGGGCAACTACGGCCAGG
CGCTCCGGGTGATCCAGGACCTGTACGACTACTTCATTGCCAACGGGTGGAACTTCATGGGCGGC
TTTCTTCTCGAAGTCTACATGGAGTGCCTTGAGAAGACGGGCGGGGACTCGAAAGCCCAGACGAT
GGGGGCGCTCAAACTCTTCCAGACCATGCTCAAGGGCATTGATGGCGGGATAGGTATCAACAACT
ACGGTGCCACAAAGCCGCTTGCGTATTTTGAGCGGCTCGTGGCGA
Found at i:21938 original size:23 final size:23
Alignment explanation
Indices: 21912--21958 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 23
21902 CTTATTGTTG
21912 TTTGGCTGGTCTCGAGGCATTCT
1 TTTGGCTGGTCTCGAGGCATTCT
*
21935 TTTGGCTGGTCTTGAGGCATTCT
1 TTTGGCTGGTCTCGAGGCATTCT
21958 T
1 T
21959 GCGATATGGC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.09, C:0.19, G:0.30, T:0.43
Consensus pattern (23 bp):
TTTGGCTGGTCTCGAGGCATTCT
Left flanking sequence: Indices 21412 -- 21911
ATCTCCCACCTCGTGCGGCTCGCCTGCACATAATTTTCACTATTTAAACAGCGCCATCTTCATTT
TCAGTTCCCTAACTTTATGCAAGGATGTTATTTGTTCAGTGAGGATTCGTCCGAGAACAGATTTT
TGCTAGTTGCAAACTACATCTGACAGCTCCAACCGCCTGGCCTCGGCCTTGGGCGGACGGGAATT
TTTGGTTCTTACTTGCAAAATACTTTTTTTGAAGGTTTTGCCACCGTTTTTCCCCGTTGGCGACG
GTGGGGCCATCGGCTCCCGCGGGGAGAAACGTCGCCTGGTGCCTCGCTCGGCCCGCACGCTTGCG
GGTCTTGAGCTGGATACAACATTTTGTAAAGGGCTAGAGTAACGGGATCTTTGAGTACGATGCCG
CCAGACAAGTGGTGTTATTGTAATTACTGAGCCCAACAAGTGTATGATTGTAGGTATTCTGCTGC
GTAGTACGTGATAGCCAGCAGCTTTGGTATTGAGGCTTATTGTTG
Right flanking sequence: Indices 21959 -- 22458
GCGATATGGCAGGTTTTGAGACTCCACACTAGAGCGCAGCCACCTTGAGTTGCATATTTCAGTCC
GGCTATCTGGTTTATTTTATACACTTTGGTCTAGCGCACCCTACTCGTACATTGAGTTGTTTCGG
TACATTGACACATCAGGCGAGGCAGATGTGAGAGAGGGGCCATCCGTGGCATTCGTCTGGTTTGA
ACTATATCTTCCGTATCATGAGTACTACTGTACCTTCCCCACTATAATTGACGGCCCTATTACAT
CCTCTCAATCCAACTTTCCCCACTCATCTTCTACACCACAGCCGCGCGTCTGGCCCCCAAACTAC
ACTAAAACTCCAGTCTCACCAAACCGTCTCATCAAACAACCCCAATCTATCCCTTCTCCTTGCGT
CGTTGAGTCCCCACCTTACATCTTCTCCACTTTCCCCGTCCTCCGTGTCTCCTCCATGTCCTCCC
ATCTCCTCTTTTCGCCTCTCGTCCCCTCCATCGTTGCTTAAATTT
Found at i:23476 original size:12 final size:11
Alignment explanation
Indices: 23453--23487 Score: 52
Period size: 11 Copynumber: 3.1 Consensus size: 11
23443 AAATAACAAA
23453 TACCCTTCAAT
1 TACCCTTCAAT
23464 TACCCTCTCAAT
1 TACCCT-TCAAT
*
23476 TACCCTTAAAT
1 TACCCTTCAAT
23487 T
1 T
23488 CACTACTATG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
11 11 0.50
12 11 0.50
ACGTcount: A:0.29, C:0.34, G:0.00, T:0.37
Consensus pattern (11 bp):
TACCCTTCAAT
Left flanking sequence: Indices 22953 -- 23452
AGCAAAACAAGGGGATTGGTATTGAGTTGTTGACGTACTTGGGGGACGGAATCTGGTCGTTTGCG
GAGTAATAGAGGTTAGATAGGTAATATGACGGTAATATTAGGGTTGGGATAGTAGGCTTGAGGCG
TATCGCGATATTTATGGGCCTTCGACTGATTTATGGTTTTAGCTAAACATAGGGACATTCTATAC
CTTCAGAATCCAAAGCTTTCAAAGGTTGGCTGATCGTGGGTGAATTTCGGTGGTCGTGGAGTGAT
GATTTCTGACCCCGCCAAGGAATATACCAAGACTATAGCACATTCTAGTATGGATTCTGTGGTAA
ACCACCTACCCAGTACTGTGCCATGTATCTAGGCCGTACTCTTCTCGAGTTTTATAGCAATGTCA
TAGCCCCTTCACCACCACACTTTTATCGGGTATTGATCCGAGGCAACCCCCTGTAAGCGCGATTC
GAGCGCAATTGCTGCGATCATACACACCGCAATATAAATAACAAA
Right flanking sequence: Indices 23488 -- 23987
CACTACTATGACTCAATTAGCCACTACTGTTGACGTTACCCTTAACAATGGCCGCAAAATGCCCG
CGTTGGGCCTTGGGACCGTGCCTCCCGAGAACGTGGACGAGGTCAAAGACCAGGTGATTACCGCG
GTCAAAGCTGGCTACCGCCACATTGACACCGCGTGGTACTACGGGCTGGAGCCCGCAATTGGCGC
TGCCCTCAAGGAGCTCTTTGCCGAGGGCTACAAGAGAGACGACCTTTTCATCACCACCAAAGTGT
GGCCCTCTTACTGGCACAACCCCGAACAGTCGATCGACGAGTCTCTCAAGAGTCTTGGCATTGAC
TACGTCGACCTCGTGTTGCAGCACTGGCCCCTCGAGTTTGACGCGGGTCCCGATGGCACCCCGGC
GGTGCCCAAGGACAGCCAGGGCAACATCAAGTTCGCCGACGACCCTGCTAACGGTACCAAGTTCA
TTGAGGTGTACCAGGAGCTCGAGAAGATCCTCGAAAAGGGCCAGA
Found at i:34537 original size:13 final size:13
Alignment explanation
Indices: 34521--34581 Score: 104
Period size: 13 Copynumber: 4.7 Consensus size: 13
34511 TATCTGTTCT
*
34521 CATCAATTCGTAG
1 CATCATTTCGTAG
34534 CATCATTTCGTAG
1 CATCATTTCGTAG
34547 CATCATTTCGTAG
1 CATCATTTCGTAG
34560 CATCATTTCGTAG
1 CATCATTTCGTAG
*
34573 TATCATTTC
1 CATCATTTC
34582 ATGGGCACAT
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 46 1.00
ACGTcount: A:0.25, C:0.23, G:0.13, T:0.39
Consensus pattern (13 bp):
CATCATTTCGTAG
Left flanking sequence: Indices 34021 -- 34520
GTATCCCCGGTGTCTTCCACGGTGTCAAGACTTACGTGCTTCAGAACGATGACGGCCAGGTCTAC
GACACTCACTCGGTGCTGGCTGGGTTGGACTACCCCGGTGTTGGTCCCGAGTTGGCCTTCTGGAA
GGCCACCGGCCGTGCTGACTTTGTCGCTGCCACCGACGCTGAGGCTCTCCAGGGCTTCAAGTGGT
TGTCGCAGTACGAGGGTATTATCCCCGCTCTCGAGCTGTCCCACGCCATCTTTGGTGCCGTTCAG
TTGGCCAAGAAGATGAACCCCGACCAGCACATCATCGTCAACGTCTCCGGTAGAGGTGACAAGGA
CGTGCAGCTGGTGGCTGAGGTGCTCCCCACGTTGGGCCCCAAGATCGACTGGAACCTTCGGTTCG
AGTCTGACCCGACCAAGTCGGAGTAATGAGTAATGCAAGAAGTTAGATTTTGAATTATTGTAGAG
CTATCGATGTATTGGCTATCTATGGTTGTTTGGGGTATCTGTTCT
Right flanking sequence: Indices 34582 -- 35081
ATGGGCACATTCTAGTCCCGGAACACATCAAATAGCCGCTTGGCGCTGTTGGCCATGCCAAATGT
GTTGTCCTGGACACCGCGTCTGGTCCAGCAGTTGCAAAGCAGACACACCATCGAGATGTTGCCAG
CACTTATCACCGTTTCTCTGTGAAGAGATACTGCGTGCTTGCACTTCGAGCATTGGCCTTTAGGC
TGGAGGGCGCGAGGGTTAACCATGGTGATGGGGACATAGCGTCGCAAAACCTGGTGATATAGCCC
GCAACTCTGCTCACAGAGTGACCTCCTCTTTCCTTGCTTGTGGGTTTAGCACTGGCGTTACCTTA
CTTGCTGGTGCAAAACAGAAACCCGAAGTTACAAAGGGAAGCAGGAATTGTGACGATATGGGTTA
GTTGGGGGGTTGCCGGGGGTTCCAGCTCGTCGTTCGGTTGTATCAGTGATTGATACTGAGAACTC
AAGGTAGTATATTCAATCTACTCATACTTACTGTATGTCTTGAAC
Found at i:36536 original size:10 final size:10
Alignment explanation
Indices: 36521--36591 Score: 142
Period size: 10 Copynumber: 7.1 Consensus size: 10
36511 GAATGTTCTA
36521 GAGCCGCACC
1 GAGCCGCACC
36531 GAGCCGCACC
1 GAGCCGCACC
36541 GAGCCGCACC
1 GAGCCGCACC
36551 GAGCCGCACC
1 GAGCCGCACC
36561 GAGCCGCACC
1 GAGCCGCACC
36571 GAGCCGCACC
1 GAGCCGCACC
36581 GAGCCGCACC
1 GAGCCGCACC
36591 G
1 G
36592 TAAACGAGCC
Statistics
Matches: 61, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 61 1.00
ACGTcount: A:0.20, C:0.49, G:0.31, T:0.00
Consensus pattern (10 bp):
GAGCCGCACC
Left flanking sequence: Indices 36021 -- 36520
GGGCAAAGTCGTTAAACCACACAAACCCGTAACCCTTCGAGTCTCCATTGGCCTCACGCACGACC
TGCGGCGGTTTGGCCATGGCTCCAAACTTGGTGAACGTATCGGTAAGCACCTGGGAGTCAGCCAT
CGGGTGGAGGTTGTTGACGAACACCTTGGCTCCAACGTCTATATCGCGGGCAGCCTCGGTTTTCC
CAAGCTTGAGCGGTCTACCGTACAACCGGATGCCGCGCAATATCTCAATGACGTATGCCGCATCC
TCACTCGAGTGGAACTCGACGAACCCGTACCCCTGGTGGGTCTGGAGCACCCGGTCGCGGGGCAT
GTGGACCAGCTTGACCGGGGCGAACTGGAGAAAGAGCTCGTACATAAGCGGCTCGGTCACCTGGG
CATCGACATTGCCGAAGTACACCAGCGAGACGCCCTTGATCGACATCGGTGTGTGGTGGTTGGTG
GTAGGGTATGGTTACGGAGCCATGTCCGATGATGCGAATGTTCTA
Right flanking sequence: Indices 36592 -- 37091
TAAACGAGCCGCACAACGCCGCACGAAGAGAGGCGCCACAGAATCCAACGGGTAGGTCGTTTCGA
CGGCGTAAGCAAGTCGAAAAATGTCGTATACCTGCGGCAGGCCACCGCTGAAAATAGAAGCATGT
GGTTTTGTTCGGCGGACCACTTAGTCATCCATTCGCCTCCGGGTTCGATGGTACCAAGTCGAAGC
CCATGGAGGCGGGTGGAAATCAGCACGCAACAAGTATATAAACAGAGGACAGTACTACAAGAAAA
CCACTATTCCCACAATGCTCATCTACCAGAACCCACTCTCCCCTGCCTACTGTAACTTGGCCCTG
CTCAGCGCGGCCCTCCAGCAGGTGGTCGACCTGCAGATGCTGAGCCATTCACCCGCCCATTTGCC
AGCCTCGCAGCCCAAGCCCCACCCGGAAGCAAGCGAGCGACACCCAACCGCCGCACCGGCACCAC
CTTACTCCACGGACGAAACCGATGGCAAGTACACCATTTCCTACG
Found at i:40604 original size:10 final size:10
Alignment explanation
Indices: 40589--40618 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
40579 AATTAGTAAT
40589 GTGGTGGGAC
1 GTGGTGGGAC
*
40599 GTGGTGGGGC
1 GTGGTGGGAC
40609 GTGGTGGGAC
1 GTGGTGGGAC
40619 TCCGGTGAGG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.07, C:0.10, G:0.63, T:0.20
Consensus pattern (10 bp):
GTGGTGGGAC
Left flanking sequence: Indices 40089 -- 40588
TTCCGCGTTCCGCCTCCCCGCTCCGCTGGCCAACCACAATCTCGGACGGGAGCACGTGAGCACGC
AGTGTTTAGACGGTGGTACAGAGACTACGCTCGCTACGCCAGGCTAAACCCGGCAATGGCGGGGG
TGTCGTTAACTCGTAAATTCACTATAACCAATTGGCACACGGCCCAGTCTATTTAGTCCTTCAAC
ACGATGTACAAGGCGTACAACATCCCCGGGAACCACACCAAGATGCACAACAACACGTCCAACCA
GAAGGGGGTGGTCAAGCCGCCCTCCTTCATGTACACGGCCAAGGGGGGCAAGAAGAGGGCCAAAA
TAATCGCAACAATTTTGTCGGCGTCCATAGTCAATCGGTCTGAGTCAGATGAAGTGGCGATGATG
TGACTTAAGTAATTTTGGGAACGTCCGGAACTCGGCAGGCGTATGCAGGAGAATCCACTCTATTC
GCGCGAACGATGACCCGAGCCCGAGGTGGCAAATGAATTAGTAAT
Right flanking sequence: Indices 40619 -- 41118
TCCGGTGAGGTCAATTGGGTGTAGAGATCGGCGATCCGCTTCCGCAGCTGGGTCTCCGTCATTTT
CGTTTCTGTTTTCGTCTATTTTTCACCTCCGTTTTGTCTGAAAAATCGGACCGATACGGTGAACT
AGCGCTCGGCGTGGAACCACGGTTTTGACGAGTAAACACGCGACAGTAGCGCTTGGAACGCACCA
GCGACCCACCCGGCCATCGGGTGTACCATCACACCGGTGTCCGCGTGACCAGACATGCGGTTACG
AGCACGGAATATGTATTGACTAAAACGGCGACTAGCGGCGAAATACGAGGGAACCGACGTTAAAA
CGAGTCGTCAGGACTGTCGGAGTCGGAAGGGTAGGGGGATTCAAATGGGGTAAATGCACCACGCG
GCAGATGGGTGTACTGGCGTGACAGGTCACTCTCGGTGTCGGTTGTCACCGGCAGCCGTTTTTGT
TCGTACAACTCCCGGAACCGGGCTAGCCGCCAGGTGGGCCTGACG
Found at i:52567 original size:24 final size:25
Alignment explanation
Indices: 52540--52637 Score: 107
Period size: 24 Copynumber: 4.1 Consensus size: 25
52530 AAGGATGGGC
52540 TGGAGTTTGCAACAATTAA-GTTAG
1 TGGAGTTTGCAACAATTAAGGTTAG
* * **
52564 TGGAGCTTGCAACAATT-GGGTCCG
1 TGGAGTTTGCAACAATTAAGGTTAG
52588 TGTG-GTTTGCAAC-ATTAAGGTTAG
1 TG-GAGTTTGCAACAATTAAGGTTAG
*
52612 TGGAGTTTGCAACTA-TAAGGTTAG
1 TGGAGTTTGCAACAATTAAGGTTAG
52636 TG
1 TG
52638 TTTACAATAG
Statistics
Matches: 61, Mismatches: 8, Indels: 10
0.77 0.10 0.13
Matches are distributed among these distances:
23 4 0.07
24 55 0.90
25 2 0.03
ACGTcount: A:0.27, C:0.11, G:0.30, T:0.33
Consensus pattern (25 bp):
TGGAGTTTGCAACAATTAAGGTTAG
Left flanking sequence: Indices 52040 -- 52539
TACACCGTGTTTCCCCAGGACACGAACATGTACCGCCGGCGGTTCACCCCTCTCGCCTTGATGGT
GTGGAGCTTTGGTAGTTTTGGGGCCTCTCTTTTGTGTACGCGACGGTTTCCTTTTGTGCTTTTGG
ACAGCATTAATGCCATTCGGGGCTTTGCCATGGCCCGACCGGTGTTCTGGGTGGTGTTGTGCTTC
TGCAACATCAAGGACGCGGGAGCGTCGCTTGGGGGCGACGGGTGGTACTTGTTCGTTATGTTTTT
GTTTGGGTTTACCCACGGGCAAGTGTTCTCTCTGGCAGCCATGATGGTGACTGAGCTTTGTGAGA
CAGTCGCCGAGAAGCGGGCTGCAGGGGTCTACGTGGAGCGTGTGAGTAACGTGGGTACGGTCGTG
GGTGTGCTCTTATCGCTCTTGGTTATGTGGTACTTTGACGCGAACCTCCTTCAACGCTAGATTTT
AATACTCAATACCCTTAGTGTTTATAGATGTGAATAAGGATGGGC
Right flanking sequence: Indices 52638 -- 53137
TTTACAATAGACCGAATGAACGTGGGGGCCCGGAAGCCTTCAGACTCCAATCAAGCTACATTAGC
TAACTGCGTACTAGCCTTCGTATTAAGGATCGTTGAAAAGAGAATGGGGCGCAGTTTGTTACCCC
CTGACCACTCGCGGTGACCTTTTCCCTGTGAAAAACAAACCCTTCTCCTTCCACACTAATTGACG
CTTCCAGTAACTCGAACCGGATCATCATCTATGTTGGCCTTCTTGCGCGCTTACAAATCTAGATT
GTTCGAACTCTATTTACCAAATAGGCAATTCGATCCCTAGAGAAGCCACGGTGTGTACAGCCTTG
GCAATTACATAATCGCGACCCCTTACTTCACCGTTTTCGAGATCCCCTATTTAACAGCTTCGCTT
TGTAGCCTCTCTCCTAATGTTTTGGCTAGTTCTTACCCTGTTTATAGCGTTCTACTTTCTTGCCC
ACCACCTCTGGTACCGGGTTCGTGAGCGCCGGTTCCCCCTGGTGG
Found at i:55489 original size:24 final size:21
Alignment explanation
Indices: 55444--55483 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
55434 ATCAAGGACC
55444 CACATAAGCATCACCACCCAT
1 CACATAAGCATCACCACCCAT
55465 CACATAAGCATCACCACCC
1 CACATAAGCATCACCACCC
55484 TTCATCTCTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.38, C:0.45, G:0.05, T:0.12
Consensus pattern (21 bp):
CACATAAGCATCACCACCCAT
Left flanking sequence: Indices 54944 -- 55443
GAGGTATTTGAGCGTCAACAGCGTGAGCACCGCTGGAGTGAACAACGCCAAAGCCATAGTCGTTT
TGTGGGGCACTTGAGGGTTATAAACGTGCGTAGGCTGTCATTGTTCGCAACCGTGTTTATGGGGC
ACATGACGAGGCGGCCGCGTACAGCGGGCGACGACACGAGATATACGGTGGTCGCTAGTAAGCGA
GACAGGTAACGGGGAGGAGGGGCTACGGAGGCGGGGTACTTGGAGGAGGGTTGAGGACGGTAGGG
TCAAGGTGGCTAAATCAAGGCCACCTGCCCCGAAAACGCGTCGATCTTGGCACTGCGCTATTAAC
GCGACAGGTTGACGCGGAGCACCCCGGATTGGGACACAGCCGAGGTGGGGATGGGGTAGTTCTTC
TGGTAGGACGCCATGGAGACAGCACGGACGCTGGTTATTTCCGGGTTGGTCATTGATGTCACCCG
TTTTGTGTATCGGTCCTTCAATTCATCAAGGTTGCATCAAGGACC
Right flanking sequence: Indices 55484 -- 55983
TTCATCTCTAATTAAAAACCCAAACGTAACAGCTCTCTTTCTACCCCCCATCTAAACTCAACCGA
GTATCCTAACAGCTCTCTTTCTACCCCCCATCTAAACTCAACCGAGTATCCTAACAGCTCTCTCT
ACCCCCCATCTAAACTCAACCGAGTATCCAATAGCTCCCTCTACCCCCCATCTAAACTCTACCCA
GTATCCTGACAGCTCTCTCTACCCCCCATCTAAACTCAACTGATTATCCCATAGCTCCCTCTACC
CCCAGATAAACTCAAACAAGTACCCCAACAGCTCTCTACCTCCCTATCATTACTATTTACAGAAG
AATCGATGCTAATTGATGCGAAAACGACGGCTTGTCCCCGATAAGCTCATTCGTCACCCGGTCCT
CGGTGGCCTCGTGGCCAAACGGGTCCATGGCCATGTTGTGGGCCTTGTTCCGCTGGGTCTTGGCC
AGCTTTTGCACGGCCCGGCGGTACAGCTTCCCCTCGGGCCACCCG
Found at i:55629 original size:43 final size:43
Alignment explanation
Indices: 55510--55780 Score: 341
Period size: 43 Copynumber: 6.3 Consensus size: 43
55500 AACCCAAACG
55510 TAACAGCTCTCTTTCTACCCCCCATCTAAACTCAACCGAGTATCC
1 TAACAGCTCTC--TCTACCCCCCATCTAAACTCAACCGAGTATCC
55555 TAACAGCTCTCTTTCTACCCCCCATCTAAACTCAACCGAGTATCC
1 TAACAGCTCTC--TCTACCCCCCATCTAAACTCAACCGAGTATCC
55600 TAACAGCTCTCTCTACCCCCCATCTAAACTCAACCGAGTATCC
1 TAACAGCTCTCTCTACCCCCCATCTAAACTCAACCGAGTATCC
* * * *
55643 -AATAGCTCCCTCTACCCCCCATCTAAACTCTACCCAGTATCC
1 TAACAGCTCTCTCTACCCCCCATCTAAACTCAACCGAGTATCC
* * *
55685 TGACAGCTCTCTCTACCCCCCATCTAAACTCAACTGATTATCC
1 TAACAGCTCTCTCTACCCCCCATCTAAACTCAACCGAGTATCC
* * * ** * * *
55728 -CATAGCTCCCTCTA-CCCCCAGATAAACTCAAACAAGTACCC
1 TAACAGCTCTCTCTACCCCCCATCTAAACTCAACCGAGTATCC
*
55769 CAACAGCTCTCT
1 TAACAGCTCTCT
55781 ACCTCCCTAT
Statistics
Matches: 200, Mismatches: 24, Indels: 7
0.87 0.10 0.03
Matches are distributed among these distances:
41 20 0.10
42 57 0.28
43 67 0.34
45 56 0.28
ACGTcount: A:0.28, C:0.41, G:0.07, T:0.24
Consensus pattern (43 bp):
TAACAGCTCTCTCTACCCCCCATCTAAACTCAACCGAGTATCC
Left flanking sequence: Indices 55010 -- 55509
GTGGGGCACTTGAGGGTTATAAACGTGCGTAGGCTGTCATTGTTCGCAACCGTGTTTATGGGGCA
CATGACGAGGCGGCCGCGTACAGCGGGCGACGACACGAGATATACGGTGGTCGCTAGTAAGCGAG
ACAGGTAACGGGGAGGAGGGGCTACGGAGGCGGGGTACTTGGAGGAGGGTTGAGGACGGTAGGGT
CAAGGTGGCTAAATCAAGGCCACCTGCCCCGAAAACGCGTCGATCTTGGCACTGCGCTATTAACG
CGACAGGTTGACGCGGAGCACCCCGGATTGGGACACAGCCGAGGTGGGGATGGGGTAGTTCTTCT
GGTAGGACGCCATGGAGACAGCACGGACGCTGGTTATTTCCGGGTTGGTCATTGATGTCACCCGT
TTTGTGTATCGGTCCTTCAATTCATCAAGGTTGCATCAAGGACCCACATAAGCATCACCACCCAT
CACATAAGCATCACCACCCTTCATCTCTAATTAAAAACCCAAACG
Right flanking sequence: Indices 55781 -- 56280
ACCTCCCTATCATTACTATTTACAGAAGAATCGATGCTAATTGATGCGAAAACGACGGCTTGTCC
CCGATAAGCTCATTCGTCACCCGGTCCTCGGTGGCCTCGTGGCCAAACGGGTCCATGGCCATGTT
GTGGGCCTTGTTCCGCTGGGTCTTGGCCAGCTTTTGCACGGCCCGGCGGTACAGCTTCCCCTCGG
GCCACCCGAGCTCGTGGGCGATTTTCCAGAGCTCCTTGGCCGGGCCCGCCACGGCTTTCGCTCCC
AGCGCGGCGAGCTGGTCGTACCAGAGCCGCGCCACCGCGTGGTCGCCCCGGCGGTAGTGGTGGTT
TATGAACGGCCACAACTGGTTGAAGGTCGAGGGAACGTGGCACGCCTGGGCGTTTTTGAGGGCGG
CCGCGGCAAACGCGTAGTCGTTGTGGAGAAACCCCACCAGCACGAGCACGTCGTAGAGCGCGGTG
GTGCCTCGCGCGGTGCCAAAGTGCTCGAAGTAGTCCAAGGCGATG
Found at i:55691 original size:85 final size:85
Alignment explanation
Indices: 55510--55780 Score: 364
Period size: 85 Copynumber: 3.1 Consensus size: 85
55500 AACCCAAACG
* *
55510 TAACAGCTCTCTTTCTACCCCCCATCTAAACTCAACCGAGTATCCTAACAGCTCTCTTTCTACCC
1 TAACAGCTCTC--TCTACCCCCCATCTAAACTCAACCGAGTATCC-AATAGCTC-C-CTCTACCC
*
55575 CCCATCTAAACTCAACCGAGTATCC
61 CCCATCTAAACTCAACCCAGTATCC
55600 TAACAGCTCTCTCTACCCCCCATCTAAACTCAACCGAGTATCCAATAGCTCCCTCTACCCCCCAT
1 TAACAGCTCTCTCTACCCCCCATCTAAACTCAACCGAGTATCCAATAGCTCCCTCTACCCCCCAT
*
55665 CTAAACTCTACCCAGTATCC
66 CTAAACTCAACCCAGTATCC
* * * * *
55685 TGACAGCTCTCTCTACCCCCCATCTAAACTCAACTGATTATCCCATAGCTCCCTCTA-CCCCCAG
1 TAACAGCTCTCTCTACCCCCCATCTAAACTCAACCGAGTATCCAATAGCTCCCTCTACCCCCCAT
* * * *
55749 ATAAACTCAAACAAGTACCC
66 CTAAACTCAACCCAGTATCC
*
55769 CAACAGCTCTCT
1 TAACAGCTCTCT
55781 ACCTCCCTAT
Statistics
Matches: 165, Mismatches: 16, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
84 31 0.19
85 83 0.50
86 1 0.01
87 7 0.04
88 32 0.19
90 11 0.07
ACGTcount: A:0.28, C:0.41, G:0.07, T:0.24
Consensus pattern (85 bp):
TAACAGCTCTCTCTACCCCCCATCTAAACTCAACCGAGTATCCAATAGCTCCCTCTACCCCCCAT
CTAAACTCAACCCAGTATCC
Left flanking sequence: Indices 55010 -- 55509
GTGGGGCACTTGAGGGTTATAAACGTGCGTAGGCTGTCATTGTTCGCAACCGTGTTTATGGGGCA
CATGACGAGGCGGCCGCGTACAGCGGGCGACGACACGAGATATACGGTGGTCGCTAGTAAGCGAG
ACAGGTAACGGGGAGGAGGGGCTACGGAGGCGGGGTACTTGGAGGAGGGTTGAGGACGGTAGGGT
CAAGGTGGCTAAATCAAGGCCACCTGCCCCGAAAACGCGTCGATCTTGGCACTGCGCTATTAACG
CGACAGGTTGACGCGGAGCACCCCGGATTGGGACACAGCCGAGGTGGGGATGGGGTAGTTCTTCT
GGTAGGACGCCATGGAGACAGCACGGACGCTGGTTATTTCCGGGTTGGTCATTGATGTCACCCGT
TTTGTGTATCGGTCCTTCAATTCATCAAGGTTGCATCAAGGACCCACATAAGCATCACCACCCAT
CACATAAGCATCACCACCCTTCATCTCTAATTAAAAACCCAAACG
Right flanking sequence: Indices 55781 -- 56280
ACCTCCCTATCATTACTATTTACAGAAGAATCGATGCTAATTGATGCGAAAACGACGGCTTGTCC
CCGATAAGCTCATTCGTCACCCGGTCCTCGGTGGCCTCGTGGCCAAACGGGTCCATGGCCATGTT
GTGGGCCTTGTTCCGCTGGGTCTTGGCCAGCTTTTGCACGGCCCGGCGGTACAGCTTCCCCTCGG
GCCACCCGAGCTCGTGGGCGATTTTCCAGAGCTCCTTGGCCGGGCCCGCCACGGCTTTCGCTCCC
AGCGCGGCGAGCTGGTCGTACCAGAGCCGCGCCACCGCGTGGTCGCCCCGGCGGTAGTGGTGGTT
TATGAACGGCCACAACTGGTTGAAGGTCGAGGGAACGTGGCACGCCTGGGCGTTTTTGAGGGCGG
CCGCGGCAAACGCGTAGTCGTTGTGGAGAAACCCCACCAGCACGAGCACGTCGTAGAGCGCGGTG
GTGCCTCGCGCGGTGCCAAAGTGCTCGAAGTAGTCCAAGGCGATG
Found at i:58358 original size:16 final size:16
Alignment explanation
Indices: 58317--58366 Score: 55
Period size: 16 Copynumber: 3.0 Consensus size: 16
58307 GTTTTTGACG
*
58317 GGATGAGGAGGAGAGGA
1 GGATGAGGAAGAG-GGA
*
58334 GGGTGGAGGAAGAGGGA
1 GGAT-GAGGAAGAGGGA
*
58351 GGATGAGGGAGAGGGA
1 GGATGAGGAAGAGGGA
58367 TGGAGGGGAA
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
16 11 0.39
17 9 0.32
18 8 0.29
ACGTcount: A:0.32, C:0.00, G:0.62, T:0.06
Consensus pattern (16 bp):
GGATGAGGAAGAGGGA
Left flanking sequence: Indices 57817 -- 58316
AGCACGGTTTTGGCCCGGGTCTGGTGGTCGTGGGGGGCTGTTTCGCCCGGTTCTGGTCCGTTTTC
GCCCGAGAAAAGGGCCTCGGGTTTGTTTTTGGCGGTTTTCAGCCGCTCGTGCTGCGTCTTGTGGC
GCTGGCTGGCCTCCTGGTACGCTTTTTCGCCACCGGGGGCGAGCTCGCGGTCAAGCGTCTCTAGC
GGCACGGGGAACGCCGTGGCGGCATGCGAAAGGGTTCTCCGTGGTAGCAGCAGCCCTGGTAGTCG
GTGGCTGGCTGTCAGAGCCGCGGTAGTGTCCGCGGGACGGGATCGTGTCCGGGGTAGTCGGGCGA
AAACGGGCCCGGGACCGGACAAAAGCGGTATCCACGGGCCCAGTGCGGTGCACAGGCGCCGTAGA
AACATCGGGAAGGTGCTGGAAGTGGCCTCAGGGCGTGGGCGTGGGCGCTGGCGGGCTGGGGGTGG
TGGTGGTGGTGATGGTCGCGGTCGTTGATGCACGGGTTTTTGACG
Right flanking sequence: Indices 58367 -- 58866
TGGAGGGGAAAGAAGACGAAGGTGGAGAAGAGGAAGGGGAAGGGAAGAAAGAAAGGTGGCTGGTG
GGTTGGTGTGAAAGTTCGCTGGTTGGATATGGTTCTTTTAAGCTCGTGTGAGGATGCCATCATTA
TATATAATTATAGTAGCAGTACTAAGTGATTTACCCGAAGGAAGAGAAAAGGTTAATGGAAAAGA
TTTGGCCTAAGGTCAAAAAGTCCTGAACCTCATCGACCTTCTTCTGGACTCGTTTTCTAGCATCG
TTCTAATATCGTTCTAATATCGTTTTAATATCGTTCTAATATCGTTCTAATATCGTTCTACTATT
ATTCTATACAGCCATAGGACCCGCCTATGACGAGCAGATCATTCTTTGACTAGTCTGTTAGCTTT
GGCCGTATATGGCCTTTTATCGCCTGGTATGAGCTATGGGCTAACACTCAATGGGACAGGGCCAT
GCACTACCACATTGACACCCTACAAGTCTTCCATCACCACCACGT
Found at i:58637 original size:11 final size:11
Alignment explanation
Indices: 58623--58686 Score: 119
Period size: 11 Copynumber: 5.8 Consensus size: 11
58613 GTTTTCTAGC
58623 ATCGTTCTAAT
1 ATCGTTCTAAT
58634 ATCGTTCTAAT
1 ATCGTTCTAAT
*
58645 ATCGTTTTAAT
1 ATCGTTCTAAT
58656 ATCGTTCTAAT
1 ATCGTTCTAAT
58667 ATCGTTCTAAT
1 ATCGTTCTAAT
58678 ATCGTTCTA
1 ATCGTTCTA
58687 CTATTATTCT
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
11 51 1.00
ACGTcount: A:0.27, C:0.17, G:0.09, T:0.47
Consensus pattern (11 bp):
ATCGTTCTAAT
Left flanking sequence: Indices 58123 -- 58622
GTCCGGGGTAGTCGGGCGAAAACGGGCCCGGGACCGGACAAAAGCGGTATCCACGGGCCCAGTGC
GGTGCACAGGCGCCGTAGAAACATCGGGAAGGTGCTGGAAGTGGCCTCAGGGCGTGGGCGTGGGC
GCTGGCGGGCTGGGGGTGGTGGTGGTGGTGATGGTCGCGGTCGTTGATGCACGGGTTTTTGACGG
GATGAGGAGGAGAGGAGGGTGGAGGAAGAGGGAGGATGAGGGAGAGGGATGGAGGGGAAAGAAGA
CGAAGGTGGAGAAGAGGAAGGGGAAGGGAAGAAAGAAAGGTGGCTGGTGGGTTGGTGTGAAAGTT
CGCTGGTTGGATATGGTTCTTTTAAGCTCGTGTGAGGATGCCATCATTATATATAATTATAGTAG
CAGTACTAAGTGATTTACCCGAAGGAAGAGAAAAGGTTAATGGAAAAGATTTGGCCTAAGGTCAA
AAAGTCCTGAACCTCATCGACCTTCTTCTGGACTCGTTTTCTAGC
Right flanking sequence: Indices 58687 -- 59186
CTATTATTCTATACAGCCATAGGACCCGCCTATGACGAGCAGATCATTCTTTGACTAGTCTGTTA
GCTTTGGCCGTATATGGCCTTTTATCGCCTGGTATGAGCTATGGGCTAACACTCAATGGGACAGG
GCCATGCACTACCACATTGACACCCTACAAGTCTTCCATCACCACCACGTCGTCCACCTTTTTGT
AGAGCCACCGCTGGTAAAAGTAGCCCGCATCAAACACCACCGTGCCTGAACTGCCCAAGATATAC
GGAAGCTCCTTGACAAAGAACAGCCACCGGGTGGGGCCCTGGAACTGGCACAGCGCCAAAATGCT
CGCGGTGTAGAAGAGGTTCCCTAGGAGAGCAGCACTGAACAACACCGGCGAAAGGCCCTCCACCA
GCCGCCGCCGCCAGTTGTGCACGAGTTGGGGCACCCGCGACAGCACATACACCACGGTGCAGCAC
CACGCAAGCACCACCCCGAGGGTGTCGGGAGGAGGCGCCGCGCCG
Found at i:58697 original size:33 final size:33
Alignment explanation
Indices: 58627--58697 Score: 106
Period size: 33 Copynumber: 2.2 Consensus size: 33
58617 TCTAGCATCG
* *
58627 TTCTAATATCGTTCTAATATCGTTTTAATATCG
1 TTCTAATATCGTTCTAATATCGTTCTAATATCA
* *
58660 TTCTAATATCGTTCTAATATCGTTCTACTATTA
1 TTCTAATATCGTTCTAATATCGTTCTAATATCA
58693 TTCTA
1 TTCTA
58698 TACAGCCATA
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.27, C:0.17, G:0.07, T:0.49
Consensus pattern (33 bp):
TTCTAATATCGTTCTAATATCGTTCTAATATCA
Left flanking sequence: Indices 58127 -- 58626
GGGGTAGTCGGGCGAAAACGGGCCCGGGACCGGACAAAAGCGGTATCCACGGGCCCAGTGCGGTG
CACAGGCGCCGTAGAAACATCGGGAAGGTGCTGGAAGTGGCCTCAGGGCGTGGGCGTGGGCGCTG
GCGGGCTGGGGGTGGTGGTGGTGGTGATGGTCGCGGTCGTTGATGCACGGGTTTTTGACGGGATG
AGGAGGAGAGGAGGGTGGAGGAAGAGGGAGGATGAGGGAGAGGGATGGAGGGGAAAGAAGACGAA
GGTGGAGAAGAGGAAGGGGAAGGGAAGAAAGAAAGGTGGCTGGTGGGTTGGTGTGAAAGTTCGCT
GGTTGGATATGGTTCTTTTAAGCTCGTGTGAGGATGCCATCATTATATATAATTATAGTAGCAGT
ACTAAGTGATTTACCCGAAGGAAGAGAAAAGGTTAATGGAAAAGATTTGGCCTAAGGTCAAAAAG
TCCTGAACCTCATCGACCTTCTTCTGGACTCGTTTTCTAGCATCG
Right flanking sequence: Indices 58698 -- 59197
TACAGCCATAGGACCCGCCTATGACGAGCAGATCATTCTTTGACTAGTCTGTTAGCTTTGGCCGT
ATATGGCCTTTTATCGCCTGGTATGAGCTATGGGCTAACACTCAATGGGACAGGGCCATGCACTA
CCACATTGACACCCTACAAGTCTTCCATCACCACCACGTCGTCCACCTTTTTGTAGAGCCACCGC
TGGTAAAAGTAGCCCGCATCAAACACCACCGTGCCTGAACTGCCCAAGATATACGGAAGCTCCTT
GACAAAGAACAGCCACCGGGTGGGGCCCTGGAACTGGCACAGCGCCAAAATGCTCGCGGTGTAGA
AGAGGTTCCCTAGGAGAGCAGCACTGAACAACACCGGCGAAAGGCCCTCCACCAGCCGCCGCCGC
CAGTTGTGCACGAGTTGGGGCACCCGCGACAGCACATACACCACGGTGCAGCACCACGCAAGCAC
CACCCCGAGGGTGTCGGGAGGAGGCGCCGCGCCGCCGTCGGGAGG
Found at i:59197 original size:24 final size:27
Alignment explanation
Indices: 59165--59220 Score: 73
Period size: 27 Copynumber: 2.1 Consensus size: 27
59155 CCCCGAGGGT
*
59165 GTCGGGA-GGA-GGCGCCGCGC-CGCC
1 GTCGGGAGGGACGGCACCGCGCGCGCC
59189 GTCGGGAGGGAGCGGCACCGCGCGCGCC
1 GTCGGGAGGGA-CGGCACCGCGCGCGCC
59217 GTCG
1 GTCG
59221 CCATCACCAG
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
24 7 0.26
25 3 0.11
27 9 0.33
28 8 0.30
ACGTcount: A:0.09, C:0.36, G:0.50, T:0.05
Consensus pattern (27 bp):
GTCGGGAGGGACGGCACCGCGCGCGCC
Left flanking sequence: Indices 58665 -- 59164
ATATCGTTCTAATATCGTTCTACTATTATTCTATACAGCCATAGGACCCGCCTATGACGAGCAGA
TCATTCTTTGACTAGTCTGTTAGCTTTGGCCGTATATGGCCTTTTATCGCCTGGTATGAGCTATG
GGCTAACACTCAATGGGACAGGGCCATGCACTACCACATTGACACCCTACAAGTCTTCCATCACC
ACCACGTCGTCCACCTTTTTGTAGAGCCACCGCTGGTAAAAGTAGCCCGCATCAAACACCACCGT
GCCTGAACTGCCCAAGATATACGGAAGCTCCTTGACAAAGAACAGCCACCGGGTGGGGCCCTGGA
ACTGGCACAGCGCCAAAATGCTCGCGGTGTAGAAGAGGTTCCCTAGGAGAGCAGCACTGAACAAC
ACCGGCGAAAGGCCCTCCACCAGCCGCCGCCGCCAGTTGTGCACGAGTTGGGGCACCCGCGACAG
CACATACACCACGGTGCAGCACCACGCAAGCACCACCCCGAGGGT
Right flanking sequence: Indices 59221 -- 59720
CCATCACCAGCGCCACCACCGCGGCGCGCCCCATCGTCGACAGGGCGTCGGAGGAGGCGTCGGAG
GGGCGCGGGGTGCGCGCCACCGCGACGTAGGGGCGCACGGGGGCAGCGCCGTAGTACCAGTACTG
GAAGGCGAGGCACACGTCGTTGGCGAGGAAGTACCCCAGGAGGAGGAGCTGGAAGGGGAGGGTGG
CCAGGTTGAAGAGACACGAGGTGAAGCTGAGAAAGTCGCCGAGGAACCAGAGCGCAAGAAACCCG
GCGGAGAGCCCGGTGGTCAGCTTGCGGCGCCAGTTGTTGTAGATCTGGGGCATCTGGGCAAACAC
CCACAGCGTGGTCAGCATGTAGCTGAAGGCAGTGGAGAGGGTGTTGGTGCACAGCATGGGGGGTG
GTTTGGAGGGGGTCGAGGAGGAGGTTGAGGAGGAGGTTGAGGAGGAGGTTGGTTAAAAGGTTTTT
TGGAGGGGTTCTTTGGGGGTTGACGAGTGTGGGGGTTTATCGGAG
Found at i:59640 original size:12 final size:12
Alignment explanation
Indices: 59615--59661 Score: 76
Period size: 12 Copynumber: 3.9 Consensus size: 12
59605 GGGGTGGTTT
* *
59615 GGAGGGGGTCGA
1 GGAGGAGGTTGA
59627 GGAGGAGGTTGA
1 GGAGGAGGTTGA
59639 GGAGGAGGTTGA
1 GGAGGAGGTTGA
59651 GGAGGAGGTTG
1 GGAGGAGGTTG
59662 GTTAAAAGGT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 33 1.00
ACGTcount: A:0.21, C:0.02, G:0.62, T:0.15
Consensus pattern (12 bp):
GGAGGAGGTTGA
Left flanking sequence: Indices 59115 -- 59614
GACAGCACATACACCACGGTGCAGCACCACGCAAGCACCACCCCGAGGGTGTCGGGAGGAGGCGC
CGCGCCGCCGTCGGGAGGGAGCGGCACCGCGCGCGCCGTCGCCATCACCAGCGCCACCACCGCGG
CGCGCCCCATCGTCGACAGGGCGTCGGAGGAGGCGTCGGAGGGGCGCGGGGTGCGCGCCACCGCG
ACGTAGGGGCGCACGGGGGCAGCGCCGTAGTACCAGTACTGGAAGGCGAGGCACACGTCGTTGGC
GAGGAAGTACCCCAGGAGGAGGAGCTGGAAGGGGAGGGTGGCCAGGTTGAAGAGACACGAGGTGA
AGCTGAGAAAGTCGCCGAGGAACCAGAGCGCAAGAAACCCGGCGGAGAGCCCGGTGGTCAGCTTG
CGGCGCCAGTTGTTGTAGATCTGGGGCATCTGGGCAAACACCCACAGCGTGGTCAGCATGTAGCT
GAAGGCAGTGGAGAGGGTGTTGGTGCACAGCATGGGGGGTGGTTT
Right flanking sequence: Indices 59662 -- 60161
GTTAAAAGGTTTTTTGGAGGGGTTCTTTGGGGGTTGACGAGTGTGGGGGTTTATCGGAGATGCGG
AGGCGAATCTGGGGTTCGCAGGTACCAAGGTGTGGGTTTGGAGGGCCTCTTGGAAGCTAGAGTCT
AAACGAAGAGTAAACGAAGAGACTCTGGGATGCCTTGGGAATGCAGAGAAACCTCAGGTGGGTTG
TGGCTTCGTCGGAGCGCTTTGGGGCAGCCTCGGGGTGTGGAGGAGGGCCGTGGAGTTGGTGGGAG
GAACTGGGAGGGTCACGTGGCAAGATCGATCGTCGAGCCAACAAAGTGATCTGGGAAGGGAAAGC
TCAGACGTTATAACCACCGCAACTTGTCGCCCTGGGAACAGTGACCGTCGGTTGTCGCCTCTGTC
ACGATCGCTAGGCGACGTTCTGGGGCTACGGTTTTACGTCACGACCGTGTGCAGGAGGGCTGGTG
TTGCCGAAAGCGGTAATGGTTGCAAAAGCCCAGAGTGTGGGGAAA
Found at i:60462 original size:20 final size:20
Alignment explanation
Indices: 60416--60464 Score: 62
Period size: 20 Copynumber: 2.5 Consensus size: 20
60406 TTTATTGAAA
*
60416 TAGTTGGCCTGTTATGGTAG
1 TAGTTGGCCTGTTATCGTAG
* * *
60436 TATTTGGCCTGTTTTCGTAT
1 TAGTTGGCCTGTTATCGTAG
60456 TAGTTGGCC
1 TAGTTGGCC
60465 ACTAAATCGA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.12, C:0.14, G:0.29, T:0.45
Consensus pattern (20 bp):
TAGTTGGCCTGTTATCGTAG
Left flanking sequence: Indices 59916 -- 60415
TGGGAGGAACTGGGAGGGTCACGTGGCAAGATCGATCGTCGAGCCAACAAAGTGATCTGGGAAGG
GAAAGCTCAGACGTTATAACCACCGCAACTTGTCGCCCTGGGAACAGTGACCGTCGGTTGTCGCC
TCTGTCACGATCGCTAGGCGACGTTCTGGGGCTACGGTTTTACGTCACGACCGTGTGCAGGAGGG
CTGGTGTTGCCGAAAGCGGTAATGGTTGCAAAAGCCCAGAGTGTGGGGAAAAAGGGGAGAGAAGC
GTGGGGAGCGGGGTGTGGAATAGGTGGAGAAGGGGGAGGGGGTTGTCTACTGTGACGGGTTTGTT
GGACGTGGGGTTTTGAGCACACCCCGGCGGAGCTATCGGTGGTGGCCACGACAGCTGGCAGTAGT
GAAGAGCGACGGCGAAGGTAGTGAGATAGGATAAGTCGGTGTTGACCCTGGTTCGTGTTTTTTTG
CGAGTTGTGTACTTTTCGGTCAGCTTGAGGGTTTTTTTATTGAAA
Right flanking sequence: Indices 60465 -- 60964
ACTAAATCGATATTCGGAGTTAGACGAACTTGTCAAATTATTGAAATCTCTACGAATTGCTTCAT
CATTTCCCAGTTGTTCTTTCTTTTCGCTTCTGCTCACTGTTGGCTGGCAACCACTTCTTTGTTCC
TACCGGATTAGGTAATTTGCGACCACAACCCGTAGAGCGCCCAATATTGTGACCAGCATTGCCCG
GGCAAAAAAAAGACAAAGCCACGTGAAAACCTCGGGTCTGAATACCCTTGTACCGTGCTCTGCTG
GCATCCAGCGCCCAACGTGGCCCGAACCTCGGCCCTTCTCGACCCTTCACTACACCTAATCTTCT
TCTTATCGTATATTATGCATTAATCATTAGAGGGTAAGATTAGCACTCGCAAACCTCAGTGGTAA
GCACCACGAGGTGAAGCACTGCCGGGGAGCCGTCGTCCAACGTCGTGGTGGTAGTCACGGTGGAC
GACTGGTAGCTGCCCTCGGGGATATCCCGGGAAATTGTCGAAATC
Found at i:61083 original size:33 final size:35
Alignment explanation
Indices: 61046--61153 Score: 112
Period size: 36 Copynumber: 3.1 Consensus size: 35
61036 CGAAATAGAT
*
61046 GAAGGAA-GG-GCCTCCGAGGCGGTGGGCTCGGAC
1 GAAGGAATGGCGCCTCCGAGGCCGTGGGCTCGGAC
*
61079 GAAGGAATGGCCGGCTCCGAGGCCGTGGGCTCGGAC
1 GAAGGAATGG-CGCCTCCGAGGCCGTGGGCTCGGAC
** * ** *
61115 GAAATAGTGGCAGATTCCGAGACCGTGGGCTCGGAC
1 GAAGGAATGGC-GCCTCCGAGGCCGTGGGCTCGGAC
61151 GAA
1 GAA
61154 ACAATGGCAG
Statistics
Matches: 63, Mismatches: 8, Indels: 5
0.83 0.11 0.07
Matches are distributed among these distances:
33 7 0.11
34 2 0.03
35 1 0.02
36 53 0.84
ACGTcount: A:0.21, C:0.24, G:0.43, T:0.12
Consensus pattern (35 bp):
GAAGGAATGGCGCCTCCGAGGCCGTGGGCTCGGAC
Left flanking sequence: Indices 60546 -- 61045
TTTCTTTTCGCTTCTGCTCACTGTTGGCTGGCAACCACTTCTTTGTTCCTACCGGATTAGGTAAT
TTGCGACCACAACCCGTAGAGCGCCCAATATTGTGACCAGCATTGCCCGGGCAAAAAAAAGACAA
AGCCACGTGAAAACCTCGGGTCTGAATACCCTTGTACCGTGCTCTGCTGGCATCCAGCGCCCAAC
GTGGCCCGAACCTCGGCCCTTCTCGACCCTTCACTACACCTAATCTTCTTCTTATCGTATATTAT
GCATTAATCATTAGAGGGTAAGATTAGCACTCGCAAACCTCAGTGGTAAGCACCACGAGGTGAAG
CACTGCCGGGGAGCCGTCGTCCAACGTCGTGGTGGTAGTCACGGTGGACGACTGGTAGCTGCCCT
CGGGGATATCCCGGGAAATTGTCGAAATCCAGTTTTCTTCGCTGGAAGTGGCGCCGCCAAGAGGG
GGCATAGGCTCGGAAGTAGAGCTCGAAACGTCGGACGAAATAGAT
Right flanking sequence: Indices 61154 -- 61653
ACAATGGCAGAAACAGAGTCCAGAGAAGGAATGACAGACTCGGGGCTAATAGCAGCCAGCGAGCC
GGTGGACTCAGAAGTGCTCTCAACGGTGGAGTTGCCCGGGGACACCGCGTTGGCAGCGTCGTCGG
GGATGGAAGGAGCGGCGGTGGGCTCGGTGGACGCGGTCTCCGTGGCCGCGGGCTCCGCCAGCAGC
AGCTCGGGAAGCGAAGGAGCGGCCTCGGAGCTGGTGGCAGCAGTCTCCGTGGCCAGGAGCACCGA
CAGGGGGTCTGCCAGCACCGTTTCTCTCACCGTGGTATCAGTCAGGGCTATCGGAGTGGTGATGG
TCTCCATAACCGTCGAGCCAACCACCACCGTGCTGGTGAGCTGGCCATCGGTGGTCCAGATGTAC
TCTGTTTCGTAGATCTTCGCCAACAACCGCACCGTGGTGGTGGAGGTGTAGTCGTCGTCGGTCAC
CGTGACAGTCAGGGTGGCATCGTCAGCAACATCCAGCGACGCTCC
Found at i:61099 original size:36 final size:36
Alignment explanation
Indices: 61057--61164 Score: 135
Period size: 36 Copynumber: 3.0 Consensus size: 36
61047 AAGGAAGGGC
* * * *
61057 CTCCGAGGCGGTGGGCTCGGACGAAGGAATGGCCGG
1 CTCCGAGGCCGTGGGCTCGGACGAAAGAATGGCAGA
* *
61093 CTCCGAGGCCGTGGGCTCGGACGAAATAGTGGCAGA
1 CTCCGAGGCCGTGGGCTCGGACGAAAGAATGGCAGA
* * *
61129 TTCCGAGACCGTGGGCTCGGACGAAACAATGGCAGA
1 CTCCGAGGCCGTGGGCTCGGACGAAAGAATGGCAGA
61165 AACAGAGTCC
Statistics
Matches: 62, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
36 62 1.00
ACGTcount: A:0.22, C:0.25, G:0.40, T:0.13
Consensus pattern (36 bp):
CTCCGAGGCCGTGGGCTCGGACGAAAGAATGGCAGA
Left flanking sequence: Indices 60557 -- 61056
TTCTGCTCACTGTTGGCTGGCAACCACTTCTTTGTTCCTACCGGATTAGGTAATTTGCGACCACA
ACCCGTAGAGCGCCCAATATTGTGACCAGCATTGCCCGGGCAAAAAAAAGACAAAGCCACGTGAA
AACCTCGGGTCTGAATACCCTTGTACCGTGCTCTGCTGGCATCCAGCGCCCAACGTGGCCCGAAC
CTCGGCCCTTCTCGACCCTTCACTACACCTAATCTTCTTCTTATCGTATATTATGCATTAATCAT
TAGAGGGTAAGATTAGCACTCGCAAACCTCAGTGGTAAGCACCACGAGGTGAAGCACTGCCGGGG
AGCCGTCGTCCAACGTCGTGGTGGTAGTCACGGTGGACGACTGGTAGCTGCCCTCGGGGATATCC
CGGGAAATTGTCGAAATCCAGTTTTCTTCGCTGGAAGTGGCGCCGCCAAGAGGGGGCATAGGCTC
GGAAGTAGAGCTCGAAACGTCGGACGAAATAGATGAAGGAAGGGC
Right flanking sequence: Indices 61165 -- 61664
AACAGAGTCCAGAGAAGGAATGACAGACTCGGGGCTAATAGCAGCCAGCGAGCCGGTGGACTCAG
AAGTGCTCTCAACGGTGGAGTTGCCCGGGGACACCGCGTTGGCAGCGTCGTCGGGGATGGAAGGA
GCGGCGGTGGGCTCGGTGGACGCGGTCTCCGTGGCCGCGGGCTCCGCCAGCAGCAGCTCGGGAAG
CGAAGGAGCGGCCTCGGAGCTGGTGGCAGCAGTCTCCGTGGCCAGGAGCACCGACAGGGGGTCTG
CCAGCACCGTTTCTCTCACCGTGGTATCAGTCAGGGCTATCGGAGTGGTGATGGTCTCCATAACC
GTCGAGCCAACCACCACCGTGCTGGTGAGCTGGCCATCGGTGGTCCAGATGTACTCTGTTTCGTA
GATCTTCGCCAACAACCGCACCGTGGTGGTGGAGGTGTAGTCGTCGTCGGTCACCGTGACAGTCA
GGGTGGCATCGTCAGCAACATCCAGCGACGCTCCAAGCGCGGCAC
Found at i:63280 original size:67 final size:71
Alignment explanation
Indices: 63138--63317 Score: 185
Period size: 67 Copynumber: 2.6 Consensus size: 71
63128 TATACTTCTA
* * * *
63138 CTATTTCGTGTATTCTCCACTGAGCTTCTACTGACACCTATTTCGTATATCACCATTGCTTTTAC
1 CTATTTCGTGTATTCTCCACTGAGCCTCTACTGACACCTATTTCATATATCACCACTGCTTCTAC
*
63203 TGACTC
66 TGACAC
* * *
63209 CTATTTCGTGTATTCTCTA-T-TGCCTCTACTG-C-CCT-TTTCATATATTCTCCACTGCTTCTA
1 CTATTTCGTGTATTCTCCACTGAGCCTCTACTGACACCTATTTCATATA-TCACCACTGCTTCTA
*
63269 CTGAGAC
65 CTGACAC
** * *
63276 CTATTTCGTGTATT-T-CACTCTGCATCTACTAACACCTATTTC
1 CTATTTCGTGTATTCTCCACTGAGCCTCTACTGACACCTATTTC
63318 GTGTATTCTC
Statistics
Matches: 91, Mismatches: 12, Indels: 13
0.78 0.10 0.11
Matches are distributed among these distances:
65 1 0.01
66 10 0.11
67 43 0.47
68 2 0.02
69 12 0.13
70 5 0.05
71 18 0.20
ACGTcount: A:0.19, C:0.29, G:0.10, T:0.42
Consensus pattern (71 bp):
CTATTTCGTGTATTCTCCACTGAGCCTCTACTGACACCTATTTCATATATCACCACTGCTTCTAC
TGACAC
Left flanking sequence: Indices 62638 -- 63137
CGGGCACGGTTAAGCCGAAAACAGGCTGGGTCGAGAGCAAATTAGGTTGGAACTGGCATTTAGCG
GAGATGTGGGAGGCTTATGGGCCGTTGATGGCGCTAGGCGATGTCGATCAGTCGGCTGATGTCGT
GAACTGATGAGATGGCTGGCTACTGCGAAGATCGACAGGGTCGACGAGATGGACGGAAGGAATGT
GCCAAAGAGTCGCAGACGGTTGACAGGTGACAAACGGTTGTGGTGGACCCTGTAGATCATGTCAA
CCATCTGTCTGGCCAGTGTTCGGAACAGCGAACAGCTTTTCGGAGTTCTTGCTCATGGCCCGGCT
GGTTATCAGATGGAAAGGGAATAGTGGGGTAAGAGCTGAAACTACGGGCGGAAGAGAAGCGAAAC
AGAGTGTGAAGACTGCTGCTGCGTTGCGAAGATCCCCAGTGTGCGTCTACTGACACCTATTTCTC
AGCATTTGCGATTAGAATCTTTTCTCCACTCTGCGTATACTTCTA
Right flanking sequence: Indices 63318 -- 63817
GTGTATTCTCCACTGCATTTACTATCCTTTCGTGTATTCCACCCTTCGTGTATTCACTGAGGAAT
CTTCAACGTCAACTTCCCCGTGGTCTTGCGGCCCTCGAGGTCCTGCACCGCCTGCTTGTAGTCTC
CAAGCTCGTAAACCGTCGCCTTGGCCACGGAAAGCTTGCCCGAGTCGATCAAATCGATAAGCTTG
CCCAGGTAGTGGTCCCACTCCTCCTGGGTAGCAATGTAGTTGTGCAAGGTCGGCCGCAACAACTT
GAGGTTCTTCTGCGCCAACCGCCCAATCGAGAACGGAGGCACCACCCCCAGGGCATTGCCATACG
ACACCAACGTGCCCTTGCGGGCCACCGTGGCCAACGACGTCTCGAACGAGTCCTTGCCCACCGAG
TCAAACGACGCAGCCACCCCCTGGCCCCCGGTGATCTCGTCCACCTTGGCCTTGATGTCGTCGCT
CGCAAGCACCACGTGGTCCGCCCCGAGCTTTTTGGCAAGCTCGAG
Found at i:63335 original size:35 final size:35
Alignment explanation
Indices: 63138--63333 Score: 204
Period size: 35 Copynumber: 5.7 Consensus size: 35
63128 TATACTTCTA
63138 CTATTTCGTGTATTCTCCACTGAGCTTCTACTGACAC
1 CTATTTCGTGTATTCTCCACT--GCTTCTACTGACAC
* * * * *
63175 CTATTTCGTATA-TCACCATTGCTTTTACTGACTC
1 CTATTTCGTGTATTCTCCACTGCTTCTACTGACAC
* * *
63209 CTATTTCGTGTATTCTCTATTGCCTCTACTG-C-C
1 CTATTTCGTGTATTCTCCACTGCTTCTACTGACAC
* * *
63242 CT-TTTCATATATTCTCCACTGCTTCTACTGAGAC
1 CTATTTCGTGTATTCTCCACTGCTTCTACTGACAC
* * *
63276 CTATTTCGTGTATT-TCACTCTGCATCTACTAACAC
1 CTATTTCGTGTATTCTC-CACTGCTTCTACTGACAC
63311 CTATTTCGTGTATTCTCCACTGC
1 CTATTTCGTGTATTCTCCACTGC
63334 ATTTACTATC
Statistics
Matches: 130, Mismatches: 23, Indels: 14
0.78 0.14 0.08
Matches are distributed among these distances:
32 23 0.18
33 3 0.02
34 29 0.22
35 56 0.43
36 8 0.06
37 11 0.08
ACGTcount: A:0.18, C:0.29, G:0.11, T:0.42
Consensus pattern (35 bp):
CTATTTCGTGTATTCTCCACTGCTTCTACTGACAC
Left flanking sequence: Indices 62638 -- 63137
CGGGCACGGTTAAGCCGAAAACAGGCTGGGTCGAGAGCAAATTAGGTTGGAACTGGCATTTAGCG
GAGATGTGGGAGGCTTATGGGCCGTTGATGGCGCTAGGCGATGTCGATCAGTCGGCTGATGTCGT
GAACTGATGAGATGGCTGGCTACTGCGAAGATCGACAGGGTCGACGAGATGGACGGAAGGAATGT
GCCAAAGAGTCGCAGACGGTTGACAGGTGACAAACGGTTGTGGTGGACCCTGTAGATCATGTCAA
CCATCTGTCTGGCCAGTGTTCGGAACAGCGAACAGCTTTTCGGAGTTCTTGCTCATGGCCCGGCT
GGTTATCAGATGGAAAGGGAATAGTGGGGTAAGAGCTGAAACTACGGGCGGAAGAGAAGCGAAAC
AGAGTGTGAAGACTGCTGCTGCGTTGCGAAGATCCCCAGTGTGCGTCTACTGACACCTATTTCTC
AGCATTTGCGATTAGAATCTTTTCTCCACTCTGCGTATACTTCTA
Right flanking sequence: Indices 63334 -- 63833
ATTTACTATCCTTTCGTGTATTCCACCCTTCGTGTATTCACTGAGGAATCTTCAACGTCAACTTC
CCCGTGGTCTTGCGGCCCTCGAGGTCCTGCACCGCCTGCTTGTAGTCTCCAAGCTCGTAAACCGT
CGCCTTGGCCACGGAAAGCTTGCCCGAGTCGATCAAATCGATAAGCTTGCCCAGGTAGTGGTCCC
ACTCCTCCTGGGTAGCAATGTAGTTGTGCAAGGTCGGCCGCAACAACTTGAGGTTCTTCTGCGCC
AACCGCCCAATCGAGAACGGAGGCACCACCCCCAGGGCATTGCCATACGACACCAACGTGCCCTT
GCGGGCCACCGTGGCCAACGACGTCTCGAACGAGTCCTTGCCCACCGAGTCAAACGACGCAGCCA
CCCCCTGGCCCCCGGTGATCTCGTCCACCTTGGCCTTGATGTCGTCGCTCGCAAGCACCACGTGG
TCCGCCCCGAGCTTTTTGGCAAGCTCGAGCTTCTCCTTGGTCAGG
Found at i:63347 original size:102 final size:101
Alignment explanation
Indices: 63148--63347 Score: 233
Period size: 102 Copynumber: 2.0 Consensus size: 101
63138 CTATTTCGTG
* * * *
63148 TATTCTCCACTGAGCTTCTACTGACACCTATTTCGTATATCACCATTGCTTTTACTGACTCCTAT
1 TATTCTCCACT-AGCTTCTACTGACACCTATTTCGTATATCACCA-TGCATCTACTAACACCTAT
* * * *
63213 TTCGTGTATTCTCTATTGCCTCTACTGCCCTTTTCATA
64 TTCGTGTATTCTCCACTGCATCTACTACCCTTTTCATA
* *
63251 TATTCTCCACT-GCTTCTACTGAGACCTATTTCGTGTATTTCACTC-TGCATCTACTAACACCTA
1 TATTCTCCACTAGCTTCTACTGACACCTATTTC--GTATATCAC-CATGCATCTACTAACACCTA
* *
63314 TTTCGTGTATTCTCCACTGCATTTACTATCCTTT
63 TTTCGTGTATTCTCCACTGCATCTACTACCCTTT
63348 CGTGTATTCC
Statistics
Matches: 82, Mismatches: 12, Indels: 7
0.81 0.12 0.07
Matches are distributed among these distances:
101 20 0.24
102 42 0.51
103 19 0.23
104 1 0.01
ACGTcount: A:0.19, C:0.29, G:0.10, T:0.42
Consensus pattern (101 bp):
TATTCTCCACTAGCTTCTACTGACACCTATTTCGTATATCACCATGCATCTACTAACACCTATTT
CGTGTATTCTCCACTGCATCTACTACCCTTTTCATA
Left flanking sequence: Indices 62648 -- 63147
TAAGCCGAAAACAGGCTGGGTCGAGAGCAAATTAGGTTGGAACTGGCATTTAGCGGAGATGTGGG
AGGCTTATGGGCCGTTGATGGCGCTAGGCGATGTCGATCAGTCGGCTGATGTCGTGAACTGATGA
GATGGCTGGCTACTGCGAAGATCGACAGGGTCGACGAGATGGACGGAAGGAATGTGCCAAAGAGT
CGCAGACGGTTGACAGGTGACAAACGGTTGTGGTGGACCCTGTAGATCATGTCAACCATCTGTCT
GGCCAGTGTTCGGAACAGCGAACAGCTTTTCGGAGTTCTTGCTCATGGCCCGGCTGGTTATCAGA
TGGAAAGGGAATAGTGGGGTAAGAGCTGAAACTACGGGCGGAAGAGAAGCGAAACAGAGTGTGAA
GACTGCTGCTGCGTTGCGAAGATCCCCAGTGTGCGTCTACTGACACCTATTTCTCAGCATTTGCG
ATTAGAATCTTTTCTCCACTCTGCGTATACTTCTACTATTTCGTG
Right flanking sequence: Indices 63348 -- 63847
CGTGTATTCCACCCTTCGTGTATTCACTGAGGAATCTTCAACGTCAACTTCCCCGTGGTCTTGCG
GCCCTCGAGGTCCTGCACCGCCTGCTTGTAGTCTCCAAGCTCGTAAACCGTCGCCTTGGCCACGG
AAAGCTTGCCCGAGTCGATCAAATCGATAAGCTTGCCCAGGTAGTGGTCCCACTCCTCCTGGGTA
GCAATGTAGTTGTGCAAGGTCGGCCGCAACAACTTGAGGTTCTTCTGCGCCAACCGCCCAATCGA
GAACGGAGGCACCACCCCCAGGGCATTGCCATACGACACCAACGTGCCCTTGCGGGCCACCGTGG
CCAACGACGTCTCGAACGAGTCCTTGCCCACCGAGTCAAACGACGCAGCCACCCCCTGGCCCCCG
GTGATCTCGTCCACCTTGGCCTTGATGTCGTCGCTCGCAAGCACCACGTGGTCCGCCCCGAGCTT
TTTGGCAAGCTCGAGCTTCTCCTTGGTCAGGGCAATGGCAATCAC
Found at i:64461 original size:14 final size:14
Alignment explanation
Indices: 64425--64472 Score: 62
Period size: 14 Copynumber: 3.4 Consensus size: 14
64415 TTTCAGATGA
64425 GAACGAGTAGCCGG
1 GAACGAGTAGCCGG
*
64439 GTA-GAAGTAGCCGG
1 GAACG-AGTAGCCGG
*
64453 GAACGAGTAGTCGG
1 GAACGAGTAGCCGG
64467 GAACGA
1 GAACGA
64473 AGAAGCCTGG
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
13 1 0.03
14 27 0.93
15 1 0.03
ACGTcount: A:0.31, C:0.17, G:0.42, T:0.10
Consensus pattern (14 bp):
GAACGAGTAGCCGG
Left flanking sequence: Indices 63925 -- 64424
CGCCCAGCTGGACCGGGTACAGCTCCTCCACAAGCGACAACGCCGTGAGACCCTGGAGCAACACC
GACCCGTAGTGGTTCCACTCGTCGTCGGAAAGGTCGGGGCGAAGCTTGGCCACCTGGACCTTGCT
CTCGTCAAACTTGGTGTACTGGGCAAACGTCAGGGGCTCAATGTAGGCGACGTTGTCGCCCACCT
TGTACTTTTTCACCTCCGAGCCCACGGCAATCACCGTGCCCGCAGCCTCGCGGCCAAGCACGTAG
GGGAACTGGGACACGGGGTAGTAGCCCCGGCGGAAGTAGCCCTCGATGAAGTTGATCCCCGCGTA
CTTGTTCTTGACAAGCACTTCCGTGGGGGCGGTGATCTTCGGGGTGGGGACATCGGTGTACTCGA
TGACGTCATAGTCGTCAGAGTTGCCGGTAATCTGCACGACCTTGTGGGTGGTGGCCTGAGTGGTG
GACATGGACGCAACTGGTAAACGGAGCAAATATGTTTTCAGATGA
Right flanking sequence: Indices 64473 -- 64972
AGAAGCCTGGTAGAAGATATCTTTGTCTTTGAGCTGGGTCAAAGAAAGTGGATGGGCTGTTGGAT
GGGTTGGTCCTCGTAGAGCGATTCTAGTTGGGCCAAGGAAGTTGGAACAGTGGGTGGATCGGTGG
CAAGGGTTCTGGTGGGGTTTATATGGGGAAAAAGTGTGGCATTGTGCAGGAGGGACAAGCCAGGG
GAGATGTGGGAAGGAAGGGGAAAATAGAGGAGGTTAAAGGAAAGGGGTCGCGGGGTGGTTCCACG
GGTGGTTTCACGAGTGGGTGGTTGAGGTAGAAGCCCTTGGTTTGTTGCTATATAGCCTGGTTCCG
TGGATATCGGTGTCCCCTACCGGTGGGACGATGGTTGCTTACTAATTCGGCTGCGAAATGCCTTA
TCCCACTGTGGCTCGCAACAAAGCCCCGAAAGAAGTGGTGGGATGGTGTCTGAGGGGCCAGTGAG
GCTGTCATATCCACAGTGGGTCATTAGTAAGCGCGACCATGCACA
Found at i:65105 original size:8 final size:8
Alignment explanation
Indices: 65092--65157 Score: 125
Period size: 8 Copynumber: 8.4 Consensus size: 8
65082 ACCATTCCGT
65092 CCAATTAA
1 CCAATTAA
65100 CCAATTAA
1 CCAATTAA
65108 CC-ATTAA
1 CCAATTAA
65115 CCAATTAA
1 CCAATTAA
65123 CCAATTAA
1 CCAATTAA
65131 CCAATTAA
1 CCAATTAA
65139 CCAATTAA
1 CCAATTAA
65147 CCAATTAA
1 CCAATTAA
65155 CCA
1 CCA
65158 GCTCAAACCT
Statistics
Matches: 57, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
7 7 0.12
8 50 0.88
ACGTcount: A:0.48, C:0.27, G:0.00, T:0.24
Consensus pattern (8 bp):
CCAATTAA
Left flanking sequence: Indices 64592 -- 65091
TGGATCGGTGGCAAGGGTTCTGGTGGGGTTTATATGGGGAAAAAGTGTGGCATTGTGCAGGAGGG
ACAAGCCAGGGGAGATGTGGGAAGGAAGGGGAAAATAGAGGAGGTTAAAGGAAAGGGGTCGCGGG
GTGGTTCCACGGGTGGTTTCACGAGTGGGTGGTTGAGGTAGAAGCCCTTGGTTTGTTGCTATATA
GCCTGGTTCCGTGGATATCGGTGTCCCCTACCGGTGGGACGATGGTTGCTTACTAATTCGGCTGC
GAAATGCCTTATCCCACTGTGGCTCGCAACAAAGCCCCGAAAGAAGTGGTGGGATGGTGTCTGAG
GGGCCAGTGAGGCTGTCATATCCACAGTGGGTCATTAGTAAGCGCGACCATGCACAAACTAGTGG
CGTTTTTGGAGGTAACAGCACTAACAAGCACTGTGAACTCTGGCTTGTGTTTTGAGCCTTGAAGC
TATGAAGTAAACAGATTTAACCAAATCAACAATTCACCATTCCGT
Right flanking sequence: Indices 65158 -- 65657
GCTCAAACCTGTGTGCTCGAATTTAACAATTCTGGCAAAATTTTACAAAAACATGATTTTGTGGC
CATTCCACCCACTCATCTCTTCATCGCGAGTTCGATTCTTACTCATTCCATTAGTATTCACCTAA
AATAAACCATACCAGCCAACAAGCGCCACCAAGGGGATCACTGTGAGGCCCAAGAACATCCACGG
CCGCGCAACTTCCTGGACCAGGCCCGGTTTGTCGTTGTCAAACGACCCGGGCACTCCGTCTTTGG
TGCTCTGGTTGTCAACGTCAGGCACCACCACAGGGTTGAGAAGGGTGGCCTCGTCCTTGGGGGCC
TCCTTGGCAAGGTTTGTGGAGCCAGCCGAGGCACCGGTTGCGGTTGCAGAGGGCTGAGAGAGGCC
AGAGCCGGTCGCAGTAGCACTCGAACCATCGGGCACCAGCGAGAGGTTCCGGGCGCTCAGGGGAA
CCGAGGAGCCGGAAGGAGACTTGGTAGCGGTCTCAATGGTATTGG
Found at i:66757 original size:30 final size:30
Alignment explanation
Indices: 66721--66789 Score: 138
Period size: 30 Copynumber: 2.3 Consensus size: 30
66711 TGCCTGACGG
66721 CTTGGAGCTGCTGCCAGAGCCAGCCAAGCC
1 CTTGGAGCTGCTGCCAGAGCCAGCCAAGCC
66751 CTTGGAGCTGCTGCCAGAGCCAGCCAAGCC
1 CTTGGAGCTGCTGCCAGAGCCAGCCAAGCC
66781 CTTGGAGCT
1 CTTGGAGCT
66790 CTCAGCCTCG
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 39 1.00
ACGTcount: A:0.19, C:0.35, G:0.30, T:0.16
Consensus pattern (30 bp):
CTTGGAGCTGCTGCCAGAGCCAGCCAAGCC
Left flanking sequence: Indices 66221 -- 66720
GCCTTCAGGTGGGTAGAGTCCAGAGAGACGCTCGAAGAGAGGTCAGTAGACCGTCCCTGGCCCGT
AGAGGCAGCGGAACCGAGCCCCGAAGAGGCCTTTGAGGCACCCGAGGTGGCACCCGAGCCAGCTC
CGATCTCTTTGGTGGCTGTGATCGGCTCCTGGTGGGCCTTCTTCACCTCAGCAGGGAAGGGGTTG
GTCTCGTTGGCCGCAGCCACGGACTCCTGGGGCTTGGTTTTGATCTCCAGCGGGGTCACAACTGC
GTCTTTAGTGGGGATCACCGCCTCGGGAGCATCGAAGGTGGCCTGTTTGTGCAGCGAGTGCAGCC
CCGAAGCAGAGGTCTTGGAGTGCGAGCCAGCCACTCCCGAGGCCGACTTGGAGCCAGCCTGGGAC
CCGGAAGTGGTTGACCCAGCGGTGAACCCGGACGTAGACGCCTCGGAGTCCTTCAAATCGTAGCC
AGCCGGCTCCAGAGGGTGCTCAAGGCCTCTGGAAGTGCCTGACGG
Right flanking sequence: Indices 66790 -- 67289
CTCAGCCTCGGTCTTGAGCTCTTCTCTCTGGGGAACAGACCCCCCGGTGGGCTTCAAACCCTCGT
TCTTCAACCCAGAGCTCGGCTCAGCGCCCTGAGCGTGCTTGATCTCGCTAGCAATGGCTGGGGTG
ACGTTGGAAGTGTGGGGAGCCTGCTTGGACCCCGACAGATGACCAGAGCCGGCAGAAAACCCGGA
CGTGGACTTCTCAGAGTCCTTCAAGTCGTAGCCAGCCGGCTCCAGCGGGTGGGTAGACGCTCCAG
AGTGGGTAGACGCTCCAGAGTGGGTCTGGCCCGAGCCGGAGGGCTTCTGAGAGTGCCCAAAGCCA
CCAGAGCCACCCTGAGAAGCGGATTGCGCAGACCCCGCGGAGAAACCCGAGGTAGCCGCCTGGGA
GCCCTTCAAATCGTAGCCAGAGGGCTCCAGAGGGTGGTCTGAACCGCTCAAGCCACCGTGAGACT
GGGAAGAACCACCACCCGACACTCTAGAGCCGGCTCCAGACACAC
Found at i:67048 original size:20 final size:19
Alignment explanation
Indices: 67023--67074 Score: 72
Period size: 18 Copynumber: 2.8 Consensus size: 19
67013 TAGCCAGCCG
*
67023 GCTCCAGCGGGTGGGTAGAC
1 GCTCCAG-GAGTGGGTAGAC
67043 GCTCCA-GAGTGGGTAGAC
1 GCTCCAGGAGTGGGTAGAC
67061 GCTCCA-GAGTGGGT
1 GCTCCAGGAGTGGGT
67075 CTGGCCCGAG
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
18 25 0.81
20 6 0.19
ACGTcount: A:0.17, C:0.23, G:0.42, T:0.17
Consensus pattern (19 bp):
GCTCCAGGAGTGGGTAGAC
Left flanking sequence: Indices 66523 -- 67022
CTGTTTGTGCAGCGAGTGCAGCCCCGAAGCAGAGGTCTTGGAGTGCGAGCCAGCCACTCCCGAGG
CCGACTTGGAGCCAGCCTGGGACCCGGAAGTGGTTGACCCAGCGGTGAACCCGGACGTAGACGCC
TCGGAGTCCTTCAAATCGTAGCCAGCCGGCTCCAGAGGGTGCTCAAGGCCTCTGGAAGTGCCTGA
CGGCTTGGAGCTGCTGCCAGAGCCAGCCAAGCCCTTGGAGCTGCTGCCAGAGCCAGCCAAGCCCT
TGGAGCTCTCAGCCTCGGTCTTGAGCTCTTCTCTCTGGGGAACAGACCCCCCGGTGGGCTTCAAA
CCCTCGTTCTTCAACCCAGAGCTCGGCTCAGCGCCCTGAGCGTGCTTGATCTCGCTAGCAATGGC
TGGGGTGACGTTGGAAGTGTGGGGAGCCTGCTTGGACCCCGACAGATGACCAGAGCCGGCAGAAA
ACCCGGACGTGGACTTCTCAGAGTCCTTCAAGTCGTAGCCAGCCG
Right flanking sequence: Indices 67075 -- 67574
CTGGCCCGAGCCGGAGGGCTTCTGAGAGTGCCCAAAGCCACCAGAGCCACCCTGAGAAGCGGATT
GCGCAGACCCCGCGGAGAAACCCGAGGTAGCCGCCTGGGAGCCCTTCAAATCGTAGCCAGAGGGC
TCCAGAGGGTGGTCTGAACCGCTCAAGCCACCGTGAGACTGGGAAGAACCACCACCCGACACTCT
AGAGCCGGCTCCAGACACACCAGAGCCAGCACCAGACACACCAGAGCCAGCAGACGCCCCAGCGC
TAGAACCAGCCCCGGAAAAGCCCTTTGATACATCCCCCTCAGTCTTGAGCTCCTCCCTCTGGGGA
ACAGACCCCCCAGTGGGCTTCAAACCTTCATTTTTCAACCCGAACTTGGGCTCAGCGCCCTGGGA
GTGCTTGATCTCGCTGGCAATGGCTGGCGTGACGTTCGACAGCGCCCCGTTGGTCTGAGAACCCG
ACCCAGAGCTCTCCATCGCCTTCTTCAGCTCGCCCACCTTCTCGG
Found at i:67056 original size:18 final size:18
Alignment explanation
Indices: 67033--67074 Score: 84
Period size: 18 Copynumber: 2.3 Consensus size: 18
67023 GCTCCAGCGG
67033 GTGGGTAGACGCTCCAGA
1 GTGGGTAGACGCTCCAGA
67051 GTGGGTAGACGCTCCAGA
1 GTGGGTAGACGCTCCAGA
67069 GTGGGT
1 GTGGGT
67075 CTGGCCCGAG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.19, C:0.19, G:0.43, T:0.19
Consensus pattern (18 bp):
GTGGGTAGACGCTCCAGA
Left flanking sequence: Indices 66533 -- 67032
AGCGAGTGCAGCCCCGAAGCAGAGGTCTTGGAGTGCGAGCCAGCCACTCCCGAGGCCGACTTGGA
GCCAGCCTGGGACCCGGAAGTGGTTGACCCAGCGGTGAACCCGGACGTAGACGCCTCGGAGTCCT
TCAAATCGTAGCCAGCCGGCTCCAGAGGGTGCTCAAGGCCTCTGGAAGTGCCTGACGGCTTGGAG
CTGCTGCCAGAGCCAGCCAAGCCCTTGGAGCTGCTGCCAGAGCCAGCCAAGCCCTTGGAGCTCTC
AGCCTCGGTCTTGAGCTCTTCTCTCTGGGGAACAGACCCCCCGGTGGGCTTCAAACCCTCGTTCT
TCAACCCAGAGCTCGGCTCAGCGCCCTGAGCGTGCTTGATCTCGCTAGCAATGGCTGGGGTGACG
TTGGAAGTGTGGGGAGCCTGCTTGGACCCCGACAGATGACCAGAGCCGGCAGAAAACCCGGACGT
GGACTTCTCAGAGTCCTTCAAGTCGTAGCCAGCCGGCTCCAGCGG
Right flanking sequence: Indices 67075 -- 67574
CTGGCCCGAGCCGGAGGGCTTCTGAGAGTGCCCAAAGCCACCAGAGCCACCCTGAGAAGCGGATT
GCGCAGACCCCGCGGAGAAACCCGAGGTAGCCGCCTGGGAGCCCTTCAAATCGTAGCCAGAGGGC
TCCAGAGGGTGGTCTGAACCGCTCAAGCCACCGTGAGACTGGGAAGAACCACCACCCGACACTCT
AGAGCCGGCTCCAGACACACCAGAGCCAGCACCAGACACACCAGAGCCAGCAGACGCCCCAGCGC
TAGAACCAGCCCCGGAAAAGCCCTTTGATACATCCCCCTCAGTCTTGAGCTCCTCCCTCTGGGGA
ACAGACCCCCCAGTGGGCTTCAAACCTTCATTTTTCAACCCGAACTTGGGCTCAGCGCCCTGGGA
GTGCTTGATCTCGCTGGCAATGGCTGGCGTGACGTTCGACAGCGCCCCGTTGGTCTGAGAACCCG
ACCCAGAGCTCTCCATCGCCTTCTTCAGCTCGCCCACCTTCTCGG
Found at i:67294 original size:21 final size:21
Alignment explanation
Indices: 67270--67321 Score: 86
Period size: 21 Copynumber: 2.5 Consensus size: 21
67260 CCGACACTCT
* *
67270 AGAGCCGGCTCCAGACACACC
1 AGAGCCAGCACCAGACACACC
67291 AGAGCCAGCACCAGACACACC
1 AGAGCCAGCACCAGACACACC
67312 AGAGCCAGCA
1 AGAGCCAGCA
67322 GACGCCCCAG
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.35, C:0.40, G:0.23, T:0.02
Consensus pattern (21 bp):
AGAGCCAGCACCAGACACACC
Left flanking sequence: Indices 66770 -- 67269
CCAGCCAAGCCCTTGGAGCTCTCAGCCTCGGTCTTGAGCTCTTCTCTCTGGGGAACAGACCCCCC
GGTGGGCTTCAAACCCTCGTTCTTCAACCCAGAGCTCGGCTCAGCGCCCTGAGCGTGCTTGATCT
CGCTAGCAATGGCTGGGGTGACGTTGGAAGTGTGGGGAGCCTGCTTGGACCCCGACAGATGACCA
GAGCCGGCAGAAAACCCGGACGTGGACTTCTCAGAGTCCTTCAAGTCGTAGCCAGCCGGCTCCAG
CGGGTGGGTAGACGCTCCAGAGTGGGTAGACGCTCCAGAGTGGGTCTGGCCCGAGCCGGAGGGCT
TCTGAGAGTGCCCAAAGCCACCAGAGCCACCCTGAGAAGCGGATTGCGCAGACCCCGCGGAGAAA
CCCGAGGTAGCCGCCTGGGAGCCCTTCAAATCGTAGCCAGAGGGCTCCAGAGGGTGGTCTGAACC
GCTCAAGCCACCGTGAGACTGGGAAGAACCACCACCCGACACTCT
Right flanking sequence: Indices 67322 -- 67821
GACGCCCCAGCGCTAGAACCAGCCCCGGAAAAGCCCTTTGATACATCCCCCTCAGTCTTGAGCTC
CTCCCTCTGGGGAACAGACCCCCCAGTGGGCTTCAAACCTTCATTTTTCAACCCGAACTTGGGCT
CAGCGCCCTGGGAGTGCTTGATCTCGCTGGCAATGGCTGGCGTGACGTTCGACAGCGCCCCGTTG
GTCTGAGAACCCGACCCAGAGCTCTCCATCGCCTTCTTCAGCTCGCCCACCTTCTCGGAAATGAC
GTTTTTGGCCTGCTGAGGGAGCAGGGTCTGGCCCACTGCGTGGCCGCGGTCCTGAGCTGCCTGGC
CCGAGTTGACCGAGCTAGCAGCAGCTACACTCGAGCTGCCAGCTCCCTTCAAGTTGATCCCATCG
GGGGCCGTGCCTGCACCCAGTGCAGTCGCACCCGAGACATTGGCACCGGCATTTGTGGTGGCTCC
TTTGCCGGTGCTCGCAAGTGCACCCGCACCGGTGGCTGCACCACC
Found at i:69683 original size:9 final size:9
Alignment explanation
Indices: 69666--69702 Score: 56
Period size: 9 Copynumber: 4.1 Consensus size: 9
69656 CCTGCTCCCA
69666 AGGAGAAGG
1 AGGAGAAGG
*
69675 AGGAAAAGG
1 AGGAGAAGG
69684 AGGAGAAGG
1 AGGAGAAGG
*
69693 AAGAGAAGG
1 AGGAGAAGG
69702 A
1 A
69703 AGACAAGCGG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
9 25 1.00
ACGTcount: A:0.51, C:0.00, G:0.49, T:0.00
Consensus pattern (9 bp):
AGGAGAAGG
Left flanking sequence: Indices 69166 -- 69665
AGGCCACAAACGGGGTAGTCAGGGGCCAGAGGAGGTAAACATAGGCTTAGACCGCAGTGAATAGT
GTAAAGTAGTGCCGAAATTACCATTCTCTACTATTGCTACCTCTATTTTCTCCTTCCTTTACTCT
CTTCCTTTTCTCTCTCCAACTTTTCACTGCCCCGCCTGGTCAGACACCGCCTCGTATACGAGGCC
GGTATGACCCTCGTTCGCCCTCGCTCGCCCTATATAAGCCCCTGATTCATCTCTTATCCACCCCA
ACGTGACAATGACCGACGTAGCCGCCAAAGACCTCACCCTCCGCCAGGAAGTGCTTGAGCTCGAG
AAACAGCTCGAGCGCGACATGGACCCCTACAGCGAGCCGCTTATTGCCGAGAAACGGGGCCAGTT
AGTGGTTGGCGACCTCGAGCGAGGGTTGCCGGAGTTTGAGCCCATCGAGCTGGAGACCGAGTCGG
AAACGGAGTCCCCCCCTCCCTACCACGACGGTAAGCCTGCTCCCA
Right flanking sequence: Indices 69703 -- 70202
AGACAAGCGGGAGAAGCGGAAAAAACACCCCTCAGGCAGCTCGTGCTGTCCGTTTACGTTGCTTC
TGCGGATGTTCCACCAGCCCCGCTGGCGCTCGTGCTGTTGCGACCACAAGCGAAGACACGCTATG
AACTAGTTATGGTAAAGAATGGACGAAGAATAGAAGATTGAAAAGGATTAGAGCAAAAATAAAAA
CCAAAAACTGTGAAACAGCCTTGCCAGGGTCTTTGATTTTGATGTGACCGTTTAGAGTCCACAAT
GTATGGGTCTGTTGTATAATTCTCTACGTCATACATAGTCAAAAATGATGGTTGGGTAAATGACT
GCGCAAATGATGGTTGAGCACCTAAGAGTTCTCAAAGGAAGCACGGAGATAAAACGTGGAAAGCG
TTCCTCGTCCAAAACCGTACATCTTTACGTACATTCCACAGCCCCTTCTAACGGCCTAGTTTCAT
CGTAGAGGTACATTTCCACAACATATCCTGCACATAAACAAAAGG
Found at i:70423 original size:8 final size:8
Alignment explanation
Indices: 70410--70440 Score: 62
Period size: 8 Copynumber: 3.9 Consensus size: 8
70400 CCACTTAAAT
70410 CACTCAAC
1 CACTCAAC
70418 CACTCAAC
1 CACTCAAC
70426 CACTCAAC
1 CACTCAAC
70434 CACTCAA
1 CACTCAA
70441 ACCTATCATC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 23 1.00
ACGTcount: A:0.39, C:0.48, G:0.00, T:0.13
Consensus pattern (8 bp):
CACTCAAC
Left flanking sequence: Indices 69910 -- 70409
AAACAGCCTTGCCAGGGTCTTTGATTTTGATGTGACCGTTTAGAGTCCACAATGTATGGGTCTGT
TGTATAATTCTCTACGTCATACATAGTCAAAAATGATGGTTGGGTAAATGACTGCGCAAATGATG
GTTGAGCACCTAAGAGTTCTCAAAGGAAGCACGGAGATAAAACGTGGAAAGCGTTCCTCGTCCAA
AACCGTACATCTTTACGTACATTCCACAGCCCCTTCTAACGGCCTAGTTTCATCGTAGAGGTACA
TTTCCACAACATATCCTGCACATAAACAAAAGGTTGCAAAATTCCATCAGAAATCAATAGCTCAA
TCAGGGGGGAAACCTAAGAAAATAGGAGGAGTAATCAATGCTAACATTAAGAATGATTCTCTATT
GGTAAAATCAGCTGTTTAATAACTATTATAAGGAGTTTTAACTCAACCTGTATGTTAATATTATA
ATCGATAATGGTATATTACACGATATAAGGTCAAACCACTTAAAT
Right flanking sequence: Indices 70441 -- 70940
ACCTATCATCTTCCAGAGCTAAACTCCAGCACTCACCACTTGCCAATCTCAACACCCACCTCAGC
TAAACCTTAACACACACCTCCACGCTCAATCCCAGCCTCTTCACGCTAAAATTCAACACCCACTG
CTTCACAACACCCACCTCCACGCTACTCCACTCTTTCTTTAGGTTCGACCCCCACGCTACTCCAC
TCTTTCTCTAAGCTCTTTCTCTAGTTCTTTCTCAAGATTCTTTCTCTTAGTCTTTCTCTAAGCTC
CTTCTCTAAGCTCTTTCTCCAAGTCTTTCTCCACGCTCTTTCTCTAGGTTCTCTCTCTCTTTCTC
TATTTCTTCATTACCTATGTACATGTTCCATGCTGTGGCCTCCGCCTACTTCTCCCCCTCAATCT
TCGCCTGCAACGCCGCCTTCAAGAACGGGATCACCTCGCTCTTGGCCAACGCCGCCACCTGCTGT
TCTCTGATCTGCTTCACCTCCGCGGCCGCGTCGGCCGCGTTCGGG
Found at i:70653 original size:13 final size:13
Alignment explanation
Indices: 70635--70746 Score: 124
Period size: 13 Copynumber: 8.8 Consensus size: 13
70625 CGCTACTCCA
70635 CTCTTTCTCTAAG
1 CTCTTTCTCTAAG
70648 CTCTTTCTCT-AG
1 CTCTTTCTCTAAG
*
70660 TTCTTTCTC-AAG
1 CTCTTTCTCTAAG
* *
70672 ATTCTTTCTCTTAG
1 -CTCTTTCTCTAAG
70686 -TCTTTCTCTAAG
1 CTCTTTCTCTAAG
*
70698 CTCCTTCTCTAAG
1 CTCTTTCTCTAAG
*
70711 CTCTTTCTCCAAG
1 CTCTTTCTCTAAG
* *
70724 -TCTTTCTCCACG
1 CTCTTTCTCTAAG
70736 CTCTTTCTCTA
1 CTCTTTCTCTA
70747 GGTTCTCTCT
Statistics
Matches: 86, Mismatches: 8, Indels: 10
0.83 0.08 0.10
Matches are distributed among these distances:
12 34 0.40
13 50 0.58
14 2 0.02
ACGTcount: A:0.13, C:0.32, G:0.07, T:0.47
Consensus pattern (13 bp):
CTCTTTCTCTAAG
Left flanking sequence: Indices 70135 -- 70634
CCCTTCTAACGGCCTAGTTTCATCGTAGAGGTACATTTCCACAACATATCCTGCACATAAACAAA
AGGTTGCAAAATTCCATCAGAAATCAATAGCTCAATCAGGGGGGAAACCTAAGAAAATAGGAGGA
GTAATCAATGCTAACATTAAGAATGATTCTCTATTGGTAAAATCAGCTGTTTAATAACTATTATA
AGGAGTTTTAACTCAACCTGTATGTTAATATTATAATCGATAATGGTATATTACACGATATAAGG
TCAAACCACTTAAATCACTCAACCACTCAACCACTCAACCACTCAAACCTATCATCTTCCAGAGC
TAAACTCCAGCACTCACCACTTGCCAATCTCAACACCCACCTCAGCTAAACCTTAACACACACCT
CCACGCTCAATCCCAGCCTCTTCACGCTAAAATTCAACACCCACTGCTTCACAACACCCACCTCC
ACGCTACTCCACTCTTTCTTTAGGTTCGACCCCCACGCTACTCCA
Right flanking sequence: Indices 70747 -- 71246
GGTTCTCTCTCTCTTTCTCTATTTCTTCATTACCTATGTACATGTTCCATGCTGTGGCCTCCGCC
TACTTCTCCCCCTCAATCTTCGCCTGCAACGCCGCCTTCAAGAACGGGATCACCTCGCTCTTGGC
CAACGCCGCCACCTGCTGTTCTCTGATCTGCTTCACCTCCGCGGCCGCGTCGGCCGCGTTCGGGT
GCACCAACCACGGCAACTCCTCGGTGGCCTCGGCAAGCGGCAACGCCACGGGCTCCGCCGCCGTC
TGGTTGTATTTCTGCGCCTTCAACCGCGCCACGTACCGCAACCCGCGCACAAAGTCCACGGTGAC
GTCATGGTCGACGTCGTAGTCCGCCAACTGGGGCTCGATGCCAAAGAACGCGTACTGGAGCCGCA
CCAACTTGTCGTTCCACCGGGGCGCCTCGGCAGCGTCCGCGGCCAAGAACTCGGCCTCAAACTGC
GCCAAGTACTGGCCCTGCTTGTCCGCCATCGTCTGCACCCGCTCG
Found at i:70677 original size:25 final size:24
Alignment explanation
Indices: 70635--70744 Score: 107
Period size: 25 Copynumber: 4.4 Consensus size: 24
70625 CGCTACTCCA
70635 CTCTTTCTCTAAGCTCTTTCTCTAG
1 CTCTTTCTC-AAGCTCTTTCTCTAG
* *
70660 TTCTTTCTCAAGATTCTTTCTCTTAG
1 CTCTTTCTCAAG-CTCTTTCTC-TAG
*
70686 -TCTTTCTCTAAGCTCCTTCTCTAAG
1 CTCTTTCTC-AAGCTCTTTCTCT-AG
*
70711 CTCTTTCTCCAAG-TCTTTCTCCACG
1 CTCTTTCT-CAAGCTCTTTCTCTA-G
70736 CTCTTTCTC
1 CTCTTTCTC
70745 TAGGTTCTCT
Statistics
Matches: 72, Mismatches: 6, Indels: 15
0.77 0.06 0.16
Matches are distributed among these distances:
24 6 0.08
25 49 0.68
26 16 0.22
27 1 0.01
ACGTcount: A:0.13, C:0.33, G:0.07, T:0.47
Consensus pattern (24 bp):
CTCTTTCTCAAGCTCTTTCTCTAG
Left flanking sequence: Indices 70135 -- 70634
CCCTTCTAACGGCCTAGTTTCATCGTAGAGGTACATTTCCACAACATATCCTGCACATAAACAAA
AGGTTGCAAAATTCCATCAGAAATCAATAGCTCAATCAGGGGGGAAACCTAAGAAAATAGGAGGA
GTAATCAATGCTAACATTAAGAATGATTCTCTATTGGTAAAATCAGCTGTTTAATAACTATTATA
AGGAGTTTTAACTCAACCTGTATGTTAATATTATAATCGATAATGGTATATTACACGATATAAGG
TCAAACCACTTAAATCACTCAACCACTCAACCACTCAACCACTCAAACCTATCATCTTCCAGAGC
TAAACTCCAGCACTCACCACTTGCCAATCTCAACACCCACCTCAGCTAAACCTTAACACACACCT
CCACGCTCAATCCCAGCCTCTTCACGCTAAAATTCAACACCCACTGCTTCACAACACCCACCTCC
ACGCTACTCCACTCTTTCTTTAGGTTCGACCCCCACGCTACTCCA
Right flanking sequence: Indices 70745 -- 71244
TAGGTTCTCTCTCTCTTTCTCTATTTCTTCATTACCTATGTACATGTTCCATGCTGTGGCCTCCG
CCTACTTCTCCCCCTCAATCTTCGCCTGCAACGCCGCCTTCAAGAACGGGATCACCTCGCTCTTG
GCCAACGCCGCCACCTGCTGTTCTCTGATCTGCTTCACCTCCGCGGCCGCGTCGGCCGCGTTCGG
GTGCACCAACCACGGCAACTCCTCGGTGGCCTCGGCAAGCGGCAACGCCACGGGCTCCGCCGCCG
TCTGGTTGTATTTCTGCGCCTTCAACCGCGCCACGTACCGCAACCCGCGCACAAAGTCCACGGTG
ACGTCATGGTCGACGTCGTAGTCCGCCAACTGGGGCTCGATGCCAAAGAACGCGTACTGGAGCCG
CACCAACTTGTCGTTCCACCGGGGCGCCTCGGCAGCGTCCGCGGCCAAGAACTCGGCCTCAAACT
GCGCCAAGTACTGGCCCTGCTTGTCCGCCATCGTCTGCACCCGCT
Found at i:70716 original size:38 final size:38
Alignment explanation
Indices: 70635--70746 Score: 97
Period size: 38 Copynumber: 2.9 Consensus size: 38
70625 CGCTACTCCA
*
70635 CTCTTTCTCTAAGCTCTTTCTCT-AGTTCTTTCTC-AAG
1 CTCTTTCTCTAAGATCTTTCTCTAAG-TCTTTCTCTAAG
* * *
70672 ATTCTTTCTCTTAG-TCTTTCTCTAAGCTCCTTCTCTAAG
1 -CTCTTTCTCTAAGATCTTTCTCTAAG-TCTTTCTCTAAG
* * *
70711 CTCTTTCTCCAAG-TCTTTCTCCACGCTCTTTCTCTA
1 CTCTTTCTCTAAGATCTTTCTCTAAG-TCTTTCTCTA
70747 GGTTCTCTCT
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
37 9 0.15
38 50 0.81
39 3 0.05
ACGTcount: A:0.13, C:0.32, G:0.07, T:0.47
Consensus pattern (38 bp):
CTCTTTCTCTAAGATCTTTCTCTAAGTCTTTCTCTAAG
Left flanking sequence: Indices 70135 -- 70634
CCCTTCTAACGGCCTAGTTTCATCGTAGAGGTACATTTCCACAACATATCCTGCACATAAACAAA
AGGTTGCAAAATTCCATCAGAAATCAATAGCTCAATCAGGGGGGAAACCTAAGAAAATAGGAGGA
GTAATCAATGCTAACATTAAGAATGATTCTCTATTGGTAAAATCAGCTGTTTAATAACTATTATA
AGGAGTTTTAACTCAACCTGTATGTTAATATTATAATCGATAATGGTATATTACACGATATAAGG
TCAAACCACTTAAATCACTCAACCACTCAACCACTCAACCACTCAAACCTATCATCTTCCAGAGC
TAAACTCCAGCACTCACCACTTGCCAATCTCAACACCCACCTCAGCTAAACCTTAACACACACCT
CCACGCTCAATCCCAGCCTCTTCACGCTAAAATTCAACACCCACTGCTTCACAACACCCACCTCC
ACGCTACTCCACTCTTTCTTTAGGTTCGACCCCCACGCTACTCCA
Right flanking sequence: Indices 70747 -- 71246
GGTTCTCTCTCTCTTTCTCTATTTCTTCATTACCTATGTACATGTTCCATGCTGTGGCCTCCGCC
TACTTCTCCCCCTCAATCTTCGCCTGCAACGCCGCCTTCAAGAACGGGATCACCTCGCTCTTGGC
CAACGCCGCCACCTGCTGTTCTCTGATCTGCTTCACCTCCGCGGCCGCGTCGGCCGCGTTCGGGT
GCACCAACCACGGCAACTCCTCGGTGGCCTCGGCAAGCGGCAACGCCACGGGCTCCGCCGCCGTC
TGGTTGTATTTCTGCGCCTTCAACCGCGCCACGTACCGCAACCCGCGCACAAAGTCCACGGTGAC
GTCATGGTCGACGTCGTAGTCCGCCAACTGGGGCTCGATGCCAAAGAACGCGTACTGGAGCCGCA
CCAACTTGTCGTTCCACCGGGGCGCCTCGGCAGCGTCCGCGGCCAAGAACTCGGCCTCAAACTGC
GCCAAGTACTGGCCCTGCTTGTCCGCCATCGTCTGCACCCGCTCG
Found at i:71746 original size:9 final size:9
Alignment explanation
Indices: 71735--71781 Score: 78
Period size: 9 Copynumber: 5.3 Consensus size: 9
71725 CAGCGAAAAG
71735 GGAA-GGAA
1 GGAAGGGAA
*
71743 GGGAGGGAA
1 GGAAGGGAA
71752 GGAAGGGAA
1 GGAAGGGAA
71761 GGAAGGGAA
1 GGAAGGGAA
71770 GGAAGGGAA
1 GGAAGGGAA
71779 GGA
1 GGA
71782 GAGAGAAAGG
Statistics
Matches: 36, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
8 3 0.08
9 33 0.92
ACGTcount: A:0.43, C:0.00, G:0.57, T:0.00
Consensus pattern (9 bp):
GGAAGGGAA
Left flanking sequence: Indices 71235 -- 71734
TGCACCCGCTCGTAGGCCACCTGGCGCTCCAAAAGCACCTGTTTGATGCGTTTCTGGGTCAACCG
GAGCCGGTCGTCGAGGTCCTGGTGCTGCTGGGTCTTGCGGTAGCGGATGGCCTCGCCGAGCCGCA
CCTCGCGGGCGAGCACGTTGCGCTCCTGGAGAATCAAGTACCAGAGGCGGTGCAAGTCTTCGAAC
AGCTTGCGGCGCAACTCCGCGGGCAGCCACGCGCGCAGGTCCATGTCCAAGTCGTCGCCCGTGCG
GAGGGCCTGGTGGCCGCGGAAGAAGCCCCAGAGCGGGTGGTCCGGGGACACGTCAAAGTTCTTGT
GGGTGGGCACGATGGGCGGGCGCAACTGGACGTCGCGCAAGTTGCCGAACTTGAGCTTGCGGGCC
ATGCCCACCGCCGAGCTCGAGAAGAACCGTGCCATGTGGGGGGTGTGGGCGGGTCCGATCATGGT
GGAAGAACGATGGTTTTTTTTCAGTCGCACTCGTGCAGCGAAAAG
Right flanking sequence: Indices 71782 -- 72281
GAGAGAAAGGAGAGAGAAGGGATGAAGAAAGTGAACACGTGCGAGAAAGGTGGTGAGAGTGGAAA
CGTGTTTAGAGGTTGAGTGAAAGAAGTGGTGAAAATGACTCGGGGAATGTCTGTTTGGTGGTCAT
AGTTAGTGGTGAGTAGTTCGGTGAAAAGTTGGGTGAAAAGGTGGGTGAGTAGTTGTCTGAGTAGT
TGTGTGAGTAGTTGTGTGAGTAGTTGTGTGAGTAGTTGTGTGAGTAGTTGAGTCAGTTCGGTGAA
TGATTGGTTGTGAGTATTGGTGGTGAATAATTGGTGGTGAGTTGTTGGTGGTGAGTAGGTGGTTG
TGAGTAATTGGTAGTGGTATTTGGTGGTATTTGGTGGTATTTGGTGGTATTTGGTGGTCTTTGGT
GGTATTTGGTCGTATTTGGTGGTAGTCTGGGACTATACTGCGGCTAAGTGAATTGTGGTGACCTG
TGAACGGTGGTGACTTGTCTGGTTGAGCACCAGCAAGTGGTAGCA
Found at i:71751 original size:13 final size:13
Alignment explanation
Indices: 71733--71781 Score: 71
Period size: 13 Copynumber: 3.7 Consensus size: 13
71723 TGCAGCGAAA
71733 AGGGAAGGAAGGG
1 AGGGAAGGAAGGG
71746 AGGGAAGGAAGGG
1 AGGGAAGGAAGGG
* *
71759 AAGGAAGGGAAGGA
1 AGGGAA-GGAAGGG
71773 AGGGAAGGA
1 AGGGAAGGA
71782 GAGAGAAAGG
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
13 21 0.66
14 11 0.34
ACGTcount: A:0.43, C:0.00, G:0.57, T:0.00
Consensus pattern (13 bp):
AGGGAAGGAAGGG
Left flanking sequence: Indices 71233 -- 71732
TCTGCACCCGCTCGTAGGCCACCTGGCGCTCCAAAAGCACCTGTTTGATGCGTTTCTGGGTCAAC
CGGAGCCGGTCGTCGAGGTCCTGGTGCTGCTGGGTCTTGCGGTAGCGGATGGCCTCGCCGAGCCG
CACCTCGCGGGCGAGCACGTTGCGCTCCTGGAGAATCAAGTACCAGAGGCGGTGCAAGTCTTCGA
ACAGCTTGCGGCGCAACTCCGCGGGCAGCCACGCGCGCAGGTCCATGTCCAAGTCGTCGCCCGTG
CGGAGGGCCTGGTGGCCGCGGAAGAAGCCCCAGAGCGGGTGGTCCGGGGACACGTCAAAGTTCTT
GTGGGTGGGCACGATGGGCGGGCGCAACTGGACGTCGCGCAAGTTGCCGAACTTGAGCTTGCGGG
CCATGCCCACCGCCGAGCTCGAGAAGAACCGTGCCATGTGGGGGGTGTGGGCGGGTCCGATCATG
GTGGAAGAACGATGGTTTTTTTTCAGTCGCACTCGTGCAGCGAAA
Right flanking sequence: Indices 71782 -- 72281
GAGAGAAAGGAGAGAGAAGGGATGAAGAAAGTGAACACGTGCGAGAAAGGTGGTGAGAGTGGAAA
CGTGTTTAGAGGTTGAGTGAAAGAAGTGGTGAAAATGACTCGGGGAATGTCTGTTTGGTGGTCAT
AGTTAGTGGTGAGTAGTTCGGTGAAAAGTTGGGTGAAAAGGTGGGTGAGTAGTTGTCTGAGTAGT
TGTGTGAGTAGTTGTGTGAGTAGTTGTGTGAGTAGTTGTGTGAGTAGTTGAGTCAGTTCGGTGAA
TGATTGGTTGTGAGTATTGGTGGTGAATAATTGGTGGTGAGTTGTTGGTGGTGAGTAGGTGGTTG
TGAGTAATTGGTAGTGGTATTTGGTGGTATTTGGTGGTATTTGGTGGTATTTGGTGGTCTTTGGT
GGTATTTGGTCGTATTTGGTGGTAGTCTGGGACTATACTGCGGCTAAGTGAATTGTGGTGACCTG
TGAACGGTGGTGACTTGTCTGGTTGAGCACCAGCAAGTGGTAGCA
Found at i:71794 original size:9 final size:10
Alignment explanation
Indices: 71740--71801 Score: 51
Period size: 9 Copynumber: 6.5 Consensus size: 10
71730 AAAAGGGAAG
*
71740 GAAGG-GAGG
1 GAAGGAGAGA
*
71749 GAAGGA-AGG
1 GAAGGAGAGA
*
71758 GAAGGA-AGG
1 GAAGGAGAGA
*
71767 GAAGGA-AGG
1 GAAGGAGAGA
71776 GAAGGAGAGA
1 GAAGGAGAGA
71786 GAAAGGAGAGA
1 G-AAGGAGAGA
71797 GAAGG
1 GAAGG
71802 GATGAAGAAA
Statistics
Matches: 49, Mismatches: 1, Indels: 5
0.89 0.02 0.09
Matches are distributed among these distances:
9 32 0.65
10 7 0.14
11 10 0.20
ACGTcount: A:0.45, C:0.00, G:0.55, T:0.00
Consensus pattern (10 bp):
GAAGGAGAGA
Left flanking sequence: Indices 71240 -- 71739
CCGCTCGTAGGCCACCTGGCGCTCCAAAAGCACCTGTTTGATGCGTTTCTGGGTCAACCGGAGCC
GGTCGTCGAGGTCCTGGTGCTGCTGGGTCTTGCGGTAGCGGATGGCCTCGCCGAGCCGCACCTCG
CGGGCGAGCACGTTGCGCTCCTGGAGAATCAAGTACCAGAGGCGGTGCAAGTCTTCGAACAGCTT
GCGGCGCAACTCCGCGGGCAGCCACGCGCGCAGGTCCATGTCCAAGTCGTCGCCCGTGCGGAGGG
CCTGGTGGCCGCGGAAGAAGCCCCAGAGCGGGTGGTCCGGGGACACGTCAAAGTTCTTGTGGGTG
GGCACGATGGGCGGGCGCAACTGGACGTCGCGCAAGTTGCCGAACTTGAGCTTGCGGGCCATGCC
CACCGCCGAGCTCGAGAAGAACCGTGCCATGTGGGGGGTGTGGGCGGGTCCGATCATGGTGGAAG
AACGATGGTTTTTTTTCAGTCGCACTCGTGCAGCGAAAAGGGAAG
Right flanking sequence: Indices 71802 -- 72301
GATGAAGAAAGTGAACACGTGCGAGAAAGGTGGTGAGAGTGGAAACGTGTTTAGAGGTTGAGTGA
AAGAAGTGGTGAAAATGACTCGGGGAATGTCTGTTTGGTGGTCATAGTTAGTGGTGAGTAGTTCG
GTGAAAAGTTGGGTGAAAAGGTGGGTGAGTAGTTGTCTGAGTAGTTGTGTGAGTAGTTGTGTGAG
TAGTTGTGTGAGTAGTTGTGTGAGTAGTTGAGTCAGTTCGGTGAATGATTGGTTGTGAGTATTGG
TGGTGAATAATTGGTGGTGAGTTGTTGGTGGTGAGTAGGTGGTTGTGAGTAATTGGTAGTGGTAT
TTGGTGGTATTTGGTGGTATTTGGTGGTATTTGGTGGTCTTTGGTGGTATTTGGTCGTATTTGGT
GGTAGTCTGGGACTATACTGCGGCTAAGTGAATTGTGGTGACCTGTGAACGGTGGTGACTTGTCT
GGTTGAGCACCAGCAAGTGGTAGCAAGCCGTAGCATCGGGTAGAG
Found at i:71972 original size:12 final size:12
Alignment explanation
Indices: 71956--72026 Score: 133
Period size: 12 Copynumber: 5.9 Consensus size: 12
71946 GAAAAGGTGG
71956 GTGAGTAGTTGT
1 GTGAGTAGTTGT
*
71968 CTGAGTAGTTGT
1 GTGAGTAGTTGT
71980 GTGAGTAGTTGT
1 GTGAGTAGTTGT
71992 GTGAGTAGTTGT
1 GTGAGTAGTTGT
72004 GTGAGTAGTTGT
1 GTGAGTAGTTGT
72016 GTGAGTAGTTG
1 GTGAGTAGTTG
72027 AGTCAGTTCG
Statistics
Matches: 57, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
12 57 1.00
ACGTcount: A:0.17, C:0.01, G:0.41, T:0.41
Consensus pattern (12 bp):
GTGAGTAGTTGT
Left flanking sequence: Indices 71456 -- 71955
CCACGCGCGCAGGTCCATGTCCAAGTCGTCGCCCGTGCGGAGGGCCTGGTGGCCGCGGAAGAAGC
CCCAGAGCGGGTGGTCCGGGGACACGTCAAAGTTCTTGTGGGTGGGCACGATGGGCGGGCGCAAC
TGGACGTCGCGCAAGTTGCCGAACTTGAGCTTGCGGGCCATGCCCACCGCCGAGCTCGAGAAGAA
CCGTGCCATGTGGGGGGTGTGGGCGGGTCCGATCATGGTGGAAGAACGATGGTTTTTTTTCAGTC
GCACTCGTGCAGCGAAAAGGGAAGGAAGGGAGGGAAGGAAGGGAAGGAAGGGAAGGAAGGGAAGG
AGAGAGAAAGGAGAGAGAAGGGATGAAGAAAGTGAACACGTGCGAGAAAGGTGGTGAGAGTGGAA
ACGTGTTTAGAGGTTGAGTGAAAGAAGTGGTGAAAATGACTCGGGGAATGTCTGTTTGGTGGTCA
TAGTTAGTGGTGAGTAGTTCGGTGAAAAGTTGGGTGAAAAGGTGG
Right flanking sequence: Indices 72027 -- 72526
AGTCAGTTCGGTGAATGATTGGTTGTGAGTATTGGTGGTGAATAATTGGTGGTGAGTTGTTGGTG
GTGAGTAGGTGGTTGTGAGTAATTGGTAGTGGTATTTGGTGGTATTTGGTGGTATTTGGTGGTAT
TTGGTGGTCTTTGGTGGTATTTGGTCGTATTTGGTGGTAGTCTGGGACTATACTGCGGCTAAGTG
AATTGTGGTGACCTGTGAACGGTGGTGACTTGTCTGGTTGAGCACCAGCAAGTGGTAGCAAGCCG
TAGCATCGGGTAGAGTAGGGGCGTAGAGTGGATTTATCACGGCGGATTAGCGCTATTTATAGTTG
GCGATGGTTGACAACGGTGGCATTCTCGTCAGTGCCTAGACCCAGGGCCTTGCCTAAACGGGACG
TGTTTGGGTCACGCGGGCTCGAGGGACATTGACGAACGGAGCGGTGGATAAGAGTGGCGGGGAGG
CCCTCCGGGTTTATTGTACGGGTGATTTTGTAGAGCTGAGCGCTG
Found at i:71978 original size:36 final size:36
Alignment explanation
Indices: 71938--72019 Score: 110
Period size: 36 Copynumber: 2.3 Consensus size: 36
71928 TTCGGTGAAA
*
71938 AGTTGGGTGAAAAGGTGGGTGAGTAGTTGTCTGAGT
1 AGTTGTGTGAAAAGGTGGGTGAGTAGTTGTCTGAGT
** * * *
71974 AGTTGTGTGAGTAGTTGTGTGAGTAGTTGTGTGAGT
1 AGTTGTGTGAAAAGGTGGGTGAGTAGTTGTCTGAGT
72010 AGTTGTGTGA
1 AGTTGTGTGA
72020 GTAGTTGAGT
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
36 40 1.00
ACGTcount: A:0.20, C:0.01, G:0.43, T:0.37
Consensus pattern (36 bp):
AGTTGTGTGAAAAGGTGGGTGAGTAGTTGTCTGAGT
Left flanking sequence: Indices 71438 -- 71937
GCGCAACTCCGCGGGCAGCCACGCGCGCAGGTCCATGTCCAAGTCGTCGCCCGTGCGGAGGGCCT
GGTGGCCGCGGAAGAAGCCCCAGAGCGGGTGGTCCGGGGACACGTCAAAGTTCTTGTGGGTGGGC
ACGATGGGCGGGCGCAACTGGACGTCGCGCAAGTTGCCGAACTTGAGCTTGCGGGCCATGCCCAC
CGCCGAGCTCGAGAAGAACCGTGCCATGTGGGGGGTGTGGGCGGGTCCGATCATGGTGGAAGAAC
GATGGTTTTTTTTCAGTCGCACTCGTGCAGCGAAAAGGGAAGGAAGGGAGGGAAGGAAGGGAAGG
AAGGGAAGGAAGGGAAGGAGAGAGAAAGGAGAGAGAAGGGATGAAGAAAGTGAACACGTGCGAGA
AAGGTGGTGAGAGTGGAAACGTGTTTAGAGGTTGAGTGAAAGAAGTGGTGAAAATGACTCGGGGA
ATGTCTGTTTGGTGGTCATAGTTAGTGGTGAGTAGTTCGGTGAAA
Right flanking sequence: Indices 72020 -- 72519
GTAGTTGAGTCAGTTCGGTGAATGATTGGTTGTGAGTATTGGTGGTGAATAATTGGTGGTGAGTT
GTTGGTGGTGAGTAGGTGGTTGTGAGTAATTGGTAGTGGTATTTGGTGGTATTTGGTGGTATTTG
GTGGTATTTGGTGGTCTTTGGTGGTATTTGGTCGTATTTGGTGGTAGTCTGGGACTATACTGCGG
CTAAGTGAATTGTGGTGACCTGTGAACGGTGGTGACTTGTCTGGTTGAGCACCAGCAAGTGGTAG
CAAGCCGTAGCATCGGGTAGAGTAGGGGCGTAGAGTGGATTTATCACGGCGGATTAGCGCTATTT
ATAGTTGGCGATGGTTGACAACGGTGGCATTCTCGTCAGTGCCTAGACCCAGGGCCTTGCCTAAA
CGGGACGTGTTTGGGTCACGCGGGCTCGAGGGACATTGACGAACGGAGCGGTGGATAAGAGTGGC
GGGGAGGCCCTCCGGGTTTATTGTACGGGTGATTTTGTAGAGCTG
Found at i:72076 original size:14 final size:14
Alignment explanation
Indices: 72044--72134 Score: 87
Period size: 14 Copynumber: 6.6 Consensus size: 14
72034 TCGGTGAATG
*
72044 ATTGGTTGTGAGT-
1 ATTGGTGGTGAGTA
*
72057 ATTGGTGGTGAATA
1 ATTGGTGGTGAGTA
*
72071 ATTGGTGGTGAGTT
1 ATTGGTGGTGAGTA
*
72085 GTTGGTGGTGAGTA
1 ATTGGTGGTGAGTA
** *
72099 GGTGGTTGTGAGTA
1 ATTGGTGGTGAGTA
*
72113 ATTGGTAGTG-GTA
1 ATTGGTGGTGAGTA
*
72126 TTTGGTGGT
1 ATTGGTGGT
72135 ATTTGGTGGT
Statistics
Matches: 64, Mismatches: 13, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
13 21 0.33
14 43 0.67
ACGTcount: A:0.16, C:0.00, G:0.43, T:0.41
Consensus pattern (14 bp):
ATTGGTGGTGAGTA
Left flanking sequence: Indices 71544 -- 72043
ACGTCAAAGTTCTTGTGGGTGGGCACGATGGGCGGGCGCAACTGGACGTCGCGCAAGTTGCCGAA
CTTGAGCTTGCGGGCCATGCCCACCGCCGAGCTCGAGAAGAACCGTGCCATGTGGGGGGTGTGGG
CGGGTCCGATCATGGTGGAAGAACGATGGTTTTTTTTCAGTCGCACTCGTGCAGCGAAAAGGGAA
GGAAGGGAGGGAAGGAAGGGAAGGAAGGGAAGGAAGGGAAGGAGAGAGAAAGGAGAGAGAAGGGA
TGAAGAAAGTGAACACGTGCGAGAAAGGTGGTGAGAGTGGAAACGTGTTTAGAGGTTGAGTGAAA
GAAGTGGTGAAAATGACTCGGGGAATGTCTGTTTGGTGGTCATAGTTAGTGGTGAGTAGTTCGGT
GAAAAGTTGGGTGAAAAGGTGGGTGAGTAGTTGTCTGAGTAGTTGTGTGAGTAGTTGTGTGAGTA
GTTGTGTGAGTAGTTGTGTGAGTAGTTGAGTCAGTTCGGTGAATG
Right flanking sequence: Indices 72135 -- 72634
ATTTGGTGGTATTTGGTGGTATTTGGTGGTCTTTGGTGGTATTTGGTCGTATTTGGTGGTAGTCT
GGGACTATACTGCGGCTAAGTGAATTGTGGTGACCTGTGAACGGTGGTGACTTGTCTGGTTGAGC
ACCAGCAAGTGGTAGCAAGCCGTAGCATCGGGTAGAGTAGGGGCGTAGAGTGGATTTATCACGGC
GGATTAGCGCTATTTATAGTTGGCGATGGTTGACAACGGTGGCATTCTCGTCAGTGCCTAGACCC
AGGGCCTTGCCTAAACGGGACGTGTTTGGGTCACGCGGGCTCGAGGGACATTGACGAACGGAGCG
GTGGATAAGAGTGGCGGGGAGGCCCTCCGGGTTTATTGTACGGGTGATTTTGTAGAGCTGAGCGC
TGTTTGTTCGGCTCTGGTGGTTGTTAAAAGGTTTCAGTAGGCGTTGGGGTCACCGGGACAAAAGT
TGGTGGTTTATAGGTCTGTACAATGGACTTGAATGGAGAAGTGAC
Found at i:72135 original size:10 final size:10
Alignment explanation
Indices: 72120--72195 Score: 134
Period size: 10 Copynumber: 7.6 Consensus size: 10
72110 GTAATTGGTA
72120 GTGGTATTTG
1 GTGGTATTTG
72130 GTGGTATTTG
1 GTGGTATTTG
72140 GTGGTATTTG
1 GTGGTATTTG
72150 GTGGTATTTG
1 GTGGTATTTG
*
72160 GTGGTCTTTG
1 GTGGTATTTG
72170 GTGGTATTTG
1 GTGGTATTTG
*
72180 GTCGTATTTG
1 GTGGTATTTG
72190 GTGGTA
1 GTGGTA
72196 GTCTGGGACT
Statistics
Matches: 62, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
10 62 1.00
ACGTcount: A:0.09, C:0.03, G:0.39, T:0.49
Consensus pattern (10 bp):
GTGGTATTTG
Left flanking sequence: Indices 71620 -- 72119
GGGCCATGCCCACCGCCGAGCTCGAGAAGAACCGTGCCATGTGGGGGGTGTGGGCGGGTCCGATC
ATGGTGGAAGAACGATGGTTTTTTTTCAGTCGCACTCGTGCAGCGAAAAGGGAAGGAAGGGAGGG
AAGGAAGGGAAGGAAGGGAAGGAAGGGAAGGAGAGAGAAAGGAGAGAGAAGGGATGAAGAAAGTG
AACACGTGCGAGAAAGGTGGTGAGAGTGGAAACGTGTTTAGAGGTTGAGTGAAAGAAGTGGTGAA
AATGACTCGGGGAATGTCTGTTTGGTGGTCATAGTTAGTGGTGAGTAGTTCGGTGAAAAGTTGGG
TGAAAAGGTGGGTGAGTAGTTGTCTGAGTAGTTGTGTGAGTAGTTGTGTGAGTAGTTGTGTGAGT
AGTTGTGTGAGTAGTTGAGTCAGTTCGGTGAATGATTGGTTGTGAGTATTGGTGGTGAATAATTG
GTGGTGAGTTGTTGGTGGTGAGTAGGTGGTTGTGAGTAATTGGTA
Right flanking sequence: Indices 72196 -- 72695
GTCTGGGACTATACTGCGGCTAAGTGAATTGTGGTGACCTGTGAACGGTGGTGACTTGTCTGGTT
GAGCACCAGCAAGTGGTAGCAAGCCGTAGCATCGGGTAGAGTAGGGGCGTAGAGTGGATTTATCA
CGGCGGATTAGCGCTATTTATAGTTGGCGATGGTTGACAACGGTGGCATTCTCGTCAGTGCCTAG
ACCCAGGGCCTTGCCTAAACGGGACGTGTTTGGGTCACGCGGGCTCGAGGGACATTGACGAACGG
AGCGGTGGATAAGAGTGGCGGGGAGGCCCTCCGGGTTTATTGTACGGGTGATTTTGTAGAGCTGA
GCGCTGTTTGTTCGGCTCTGGTGGTTGTTAAAAGGTTTCAGTAGGCGTTGGGGTCACCGGGACAA
AAGTTGGTGGTTTATAGGTCTGTACAATGGACTTGAATGGAGAAGTGACGTCCAACTGGTGAGAG
TCGTTTCTATTGACTACCGGTACCATTTGAATTGTCTGATAAGGT
Found at i:72868 original size:10 final size:10
Alignment explanation
Indices: 72853--72890 Score: 67
Period size: 10 Copynumber: 3.8 Consensus size: 10
72843 TATTCCGTAA
72853 CCCACCATTC
1 CCCACCATTC
72863 CCCACCATTC
1 CCCACCATTC
*
72873 CCCACCATCC
1 CCCACCATTC
72883 CCCACCAT
1 CCCACCAT
72891 CCCAAGCCAC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
10 27 1.00
ACGTcount: A:0.21, C:0.63, G:0.00, T:0.16
Consensus pattern (10 bp):
CCCACCATTC
Left flanking sequence: Indices 72353 -- 72852
CGATGGTTGACAACGGTGGCATTCTCGTCAGTGCCTAGACCCAGGGCCTTGCCTAAACGGGACGT
GTTTGGGTCACGCGGGCTCGAGGGACATTGACGAACGGAGCGGTGGATAAGAGTGGCGGGGAGGC
CCTCCGGGTTTATTGTACGGGTGATTTTGTAGAGCTGAGCGCTGTTTGTTCGGCTCTGGTGGTTG
TTAAAAGGTTTCAGTAGGCGTTGGGGTCACCGGGACAAAAGTTGGTGGTTTATAGGTCTGTACAA
TGGACTTGAATGGAGAAGTGACGTCCAACTGGTGAGAGTCGTTTCTATTGACTACCGGTACCATT
TGAATTGTCTGATAAGGTGCTCACTGTAATACCAGCCACCACTAAAAATGATGGACTTCTTTTAC
AGTGAAACGTTTCACCATAATACCTACTCTCAACACGTACAATTAAAATCTATTCATTTCTCAAC
ACATCTCAACCCTACACTTCTTTCTTTCTATCAATTATTCCGTAA
Right flanking sequence: Indices 72891 -- 73390
CCCAAGCCACTACCACTAATCGCCAACAAAAAAGGCGTTGGGGGGTCTGGGGGGCGCCGCCTGCG
GCCCCCCAGCTGTACCGCCACCTGTTCCATCCACACCACGCTACATTCCCCACCCAATCGTGTCT
TCTTCCCACCCACACAAGTGGCACTGCATACAAACCACACATCTCGCAAAACTACCCATGACGGT
TTGATCCCCTGGCCCGCGCCGCACCCTCGCGGCTTCGCGTTTTTCAACCACCATCAACCCGCCCA
CCGCCCTCTAAGAGCCCCATCCCCCAGCAGCCGCCATGAACAACACCGAGCCGCTTGATTTGATT
CGTTTCCAGTTGGACGAGACCGTCGTTGTGAAGTTGCGCGGAGCGCGCGAAATGAAGGGCCGTTT
GCAGGGCTACGACTCCCACTGCAACATGGTGCTCTCCGACGCCCAGGAGACGGTGTACTTGGAAG
AGGGGGCCACCAAGCAGAAGCTGACGGAGATGGTGTACGTGCGGG
Found at i:73504 original size:11 final size:11
Alignment explanation
Indices: 73481--73552 Score: 59
Period size: 11 Copynumber: 7.1 Consensus size: 11
73471 ATAAGAGAGG
*
73481 GGAGGGGGAGA
1 GGAGGGGAAGA
73492 GGA--GG-AGA
1 GGAGGGGAAGA
73500 GGAGGGGAAGA
1 GGAGGGGAAGA
73511 GGA-GGG-AGA
1 GGAGGGGAAGA
*
73520 CGAGGGG-A-A
1 GGAGGGGAAGA
73529 GGAGGGGGAAGA
1 GGA-GGGGAAGA
*
73541 CGAGGGGAAGA
1 GGAGGGGAAGA
73552 G
1 G
73553 AGAGAAGAGT
Statistics
Matches: 50, Mismatches: 4, Indels: 14
0.74 0.06 0.21
Matches are distributed among these distances:
8 6 0.12
9 10 0.20
10 13 0.26
11 18 0.36
12 3 0.06
ACGTcount: A:0.33, C:0.03, G:0.64, T:0.00
Consensus pattern (11 bp):
GGAGGGGAAGA
Left flanking sequence: Indices 72981 -- 73480
TCCATCCACACCACGCTACATTCCCCACCCAATCGTGTCTTCTTCCCACCCACACAAGTGGCACT
GCATACAAACCACACATCTCGCAAAACTACCCATGACGGTTTGATCCCCTGGCCCGCGCCGCACC
CTCGCGGCTTCGCGTTTTTCAACCACCATCAACCCGCCCACCGCCCTCTAAGAGCCCCATCCCCC
AGCAGCCGCCATGAACAACACCGAGCCGCTTGATTTGATTCGTTTCCAGTTGGACGAGACCGTCG
TTGTGAAGTTGCGCGGAGCGCGCGAAATGAAGGGCCGTTTGCAGGGCTACGACTCCCACTGCAAC
ATGGTGCTCTCCGACGCCCAGGAGACGGTGTACTTGGAAGAGGGGGCCACCAAGCAGAAGCTGAC
GGAGATGGTGTACGTGCGGGGCGACGCTGTGATCCTTGTGAGTCCCGTGGATGCGTGAGACTAGC
CCACAGGCGGGGCTGTTATAGAGTAATAAAAGTTAATAAGAGAGG
Right flanking sequence: Indices 73553 -- 74052
AGAGAAGAGTTGAGGAAGAGTAGGAGTGAGGCAATGATTCGAGGGTGGGCGGAACGAGAGTAGAG
AAGAGGGTGGTAGCACTGTGTGAGTGTTGTGCACAAGTGGTCGTGAGATTTCCAGATACACCATA
TACTGTAAAACCACCGATTGGGTGTACAATAGCCACTCCCAACTTCTACTCCCAGCTCCCACCTG
GCTCTTCCTCCTCGCTTTTCGCTCTCTCAATGAATCTACTGCTCTCATACCTTATTCTCTATTTG
TCTATTTTGGGGTAGCTACGGCCAATGTAGTCTTCGCTGGTTTCTACACTCTAATCTCTAATCCA
GCGTCCACCTGGACCATCTGAACCATCAATCTCGATATATGAACAATCCATCTGAGTCATATTAC
CACCCCTCTGGTTCATATCTCCACCGTCTCTCCATTCTTACCATTGGGAGATCACGCCCCGCCCC
GCGCCTTCGTGCCCCCAGCCCCGGGGTCCGGCGCCTCGAACAACG
Found at i:73515 original size:30 final size:31
Alignment explanation
Indices: 73481--73561 Score: 87
Period size: 30 Copynumber: 2.6 Consensus size: 31
73471 ATAAGAGAGG
73481 GGAGGGGGAGAGGAGGAGAGGA-GGGGAAGA
1 GGAGGGGGAGAGGAGGAGAGGAGGGGGAAGA
*
73511 GGAGGGAGACGAGG-GGA-AGGAGGGGGAAGA
1 GGAGGGGGA-GAGGAGGAGAGGAGGGGGAAGA
* * *
73541 CGAGGGGAAGAGAGAGAAGAG
1 GGAGGGGGAGAG-GAGGAGAG
73562 TTGAGGAAGA
Statistics
Matches: 41, Mismatches: 5, Indels: 8
0.76 0.09 0.15
Matches are distributed among these distances:
29 7 0.17
30 26 0.63
31 6 0.15
32 2 0.05
ACGTcount: A:0.36, C:0.02, G:0.62, T:0.00
Consensus pattern (31 bp):
GGAGGGGGAGAGGAGGAGAGGAGGGGGAAGA
Left flanking sequence: Indices 72981 -- 73480
TCCATCCACACCACGCTACATTCCCCACCCAATCGTGTCTTCTTCCCACCCACACAAGTGGCACT
GCATACAAACCACACATCTCGCAAAACTACCCATGACGGTTTGATCCCCTGGCCCGCGCCGCACC
CTCGCGGCTTCGCGTTTTTCAACCACCATCAACCCGCCCACCGCCCTCTAAGAGCCCCATCCCCC
AGCAGCCGCCATGAACAACACCGAGCCGCTTGATTTGATTCGTTTCCAGTTGGACGAGACCGTCG
TTGTGAAGTTGCGCGGAGCGCGCGAAATGAAGGGCCGTTTGCAGGGCTACGACTCCCACTGCAAC
ATGGTGCTCTCCGACGCCCAGGAGACGGTGTACTTGGAAGAGGGGGCCACCAAGCAGAAGCTGAC
GGAGATGGTGTACGTGCGGGGCGACGCTGTGATCCTTGTGAGTCCCGTGGATGCGTGAGACTAGC
CCACAGGCGGGGCTGTTATAGAGTAATAAAAGTTAATAAGAGAGG
Right flanking sequence: Indices 73562 -- 74061
TTGAGGAAGAGTAGGAGTGAGGCAATGATTCGAGGGTGGGCGGAACGAGAGTAGAGAAGAGGGTG
GTAGCACTGTGTGAGTGTTGTGCACAAGTGGTCGTGAGATTTCCAGATACACCATATACTGTAAA
ACCACCGATTGGGTGTACAATAGCCACTCCCAACTTCTACTCCCAGCTCCCACCTGGCTCTTCCT
CCTCGCTTTTCGCTCTCTCAATGAATCTACTGCTCTCATACCTTATTCTCTATTTGTCTATTTTG
GGGTAGCTACGGCCAATGTAGTCTTCGCTGGTTTCTACACTCTAATCTCTAATCCAGCGTCCACC
TGGACCATCTGAACCATCAATCTCGATATATGAACAATCCATCTGAGTCATATTACCACCCCTCT
GGTTCATATCTCCACCGTCTCTCCATTCTTACCATTGGGAGATCACGCCCCGCCCCGCGCCTTCG
TGCCCCCAGCCCCGGGGTCCGGCGCCTCGAACAACGCCTCCACCT
Found at i:73524 original size:20 final size:20
Alignment explanation
Indices: 73482--73552 Score: 92
Period size: 20 Copynumber: 3.5 Consensus size: 20
73472 TAAGAGAGGG
* *
73482 GAGGGGGAGAGGA-GGAGAG
1 GAGGGGAAGAGGAGGGAGAC
73501 GAGGGGAAGAGGAGGGAGAC
1 GAGGGGAAGAGGAGGGAGAC
73521 GAGGGGAAGGAGG-GGGAAGAC
1 GAGGGGAA-GAGGAGGG-AGAC
73542 GAGGGGAAGAG
1 GAGGGGAAGAG
73553 AGAGAAGAGT
Statistics
Matches: 47, Mismatches: 2, Indels: 5
0.87 0.04 0.09
Matches are distributed among these distances:
19 12 0.26
20 19 0.40
21 16 0.34
ACGTcount: A:0.34, C:0.03, G:0.63, T:0.00
Consensus pattern (20 bp):
GAGGGGAAGAGGAGGGAGAC
Left flanking sequence: Indices 72982 -- 73481
CCATCCACACCACGCTACATTCCCCACCCAATCGTGTCTTCTTCCCACCCACACAAGTGGCACTG
CATACAAACCACACATCTCGCAAAACTACCCATGACGGTTTGATCCCCTGGCCCGCGCCGCACCC
TCGCGGCTTCGCGTTTTTCAACCACCATCAACCCGCCCACCGCCCTCTAAGAGCCCCATCCCCCA
GCAGCCGCCATGAACAACACCGAGCCGCTTGATTTGATTCGTTTCCAGTTGGACGAGACCGTCGT
TGTGAAGTTGCGCGGAGCGCGCGAAATGAAGGGCCGTTTGCAGGGCTACGACTCCCACTGCAACA
TGGTGCTCTCCGACGCCCAGGAGACGGTGTACTTGGAAGAGGGGGCCACCAAGCAGAAGCTGACG
GAGATGGTGTACGTGCGGGGCGACGCTGTGATCCTTGTGAGTCCCGTGGATGCGTGAGACTAGCC
CACAGGCGGGGCTGTTATAGAGTAATAAAAGTTAATAAGAGAGGG
Right flanking sequence: Indices 73553 -- 74052
AGAGAAGAGTTGAGGAAGAGTAGGAGTGAGGCAATGATTCGAGGGTGGGCGGAACGAGAGTAGAG
AAGAGGGTGGTAGCACTGTGTGAGTGTTGTGCACAAGTGGTCGTGAGATTTCCAGATACACCATA
TACTGTAAAACCACCGATTGGGTGTACAATAGCCACTCCCAACTTCTACTCCCAGCTCCCACCTG
GCTCTTCCTCCTCGCTTTTCGCTCTCTCAATGAATCTACTGCTCTCATACCTTATTCTCTATTTG
TCTATTTTGGGGTAGCTACGGCCAATGTAGTCTTCGCTGGTTTCTACACTCTAATCTCTAATCCA
GCGTCCACCTGGACCATCTGAACCATCAATCTCGATATATGAACAATCCATCTGAGTCATATTAC
CACCCCTCTGGTTCATATCTCCACCGTCTCTCCATTCTTACCATTGGGAGATCACGCCCCGCCCC
GCGCCTTCGTGCCCCCAGCCCCGGGGTCCGGCGCCTCGAACAACG
Found at i:73541 original size:21 final size:21
Alignment explanation
Indices: 73482--73550 Score: 83
Period size: 21 Copynumber: 3.4 Consensus size: 21
73472 TAAGAGAGGG
* *
73482 GAGGGGGA-GAGGA-GGAGAG
1 GAGGGGAAGGAGGAGGGAGAC
73501 GAGGGGAA-GAGGAGGGAGAC
1 GAGGGGAAGGAGGAGGGAGAC
73521 GAGGGGAAGGAGG-GGGAAGAC
1 GAGGGGAAGGAGGAGGG-AGAC
73542 GAGGGGAAG
1 GAGGGGAAG
73551 AGAGAGAAGA
Statistics
Matches: 45, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
19 12 0.27
20 16 0.36
21 17 0.38
ACGTcount: A:0.33, C:0.03, G:0.64, T:0.00
Consensus pattern (21 bp):
GAGGGGAAGGAGGAGGGAGAC
Left flanking sequence: Indices 72982 -- 73481
CCATCCACACCACGCTACATTCCCCACCCAATCGTGTCTTCTTCCCACCCACACAAGTGGCACTG
CATACAAACCACACATCTCGCAAAACTACCCATGACGGTTTGATCCCCTGGCCCGCGCCGCACCC
TCGCGGCTTCGCGTTTTTCAACCACCATCAACCCGCCCACCGCCCTCTAAGAGCCCCATCCCCCA
GCAGCCGCCATGAACAACACCGAGCCGCTTGATTTGATTCGTTTCCAGTTGGACGAGACCGTCGT
TGTGAAGTTGCGCGGAGCGCGCGAAATGAAGGGCCGTTTGCAGGGCTACGACTCCCACTGCAACA
TGGTGCTCTCCGACGCCCAGGAGACGGTGTACTTGGAAGAGGGGGCCACCAAGCAGAAGCTGACG
GAGATGGTGTACGTGCGGGGCGACGCTGTGATCCTTGTGAGTCCCGTGGATGCGTGAGACTAGCC
CACAGGCGGGGCTGTTATAGAGTAATAAAAGTTAATAAGAGAGGG
Right flanking sequence: Indices 73551 -- 74050
AGAGAGAAGAGTTGAGGAAGAGTAGGAGTGAGGCAATGATTCGAGGGTGGGCGGAACGAGAGTAG
AGAAGAGGGTGGTAGCACTGTGTGAGTGTTGTGCACAAGTGGTCGTGAGATTTCCAGATACACCA
TATACTGTAAAACCACCGATTGGGTGTACAATAGCCACTCCCAACTTCTACTCCCAGCTCCCACC
TGGCTCTTCCTCCTCGCTTTTCGCTCTCTCAATGAATCTACTGCTCTCATACCTTATTCTCTATT
TGTCTATTTTGGGGTAGCTACGGCCAATGTAGTCTTCGCTGGTTTCTACACTCTAATCTCTAATC
CAGCGTCCACCTGGACCATCTGAACCATCAATCTCGATATATGAACAATCCATCTGAGTCATATT
ACCACCCCTCTGGTTCATATCTCCACCGTCTCTCCATTCTTACCATTGGGAGATCACGCCCCGCC
CCGCGCCTTCGTGCCCCCAGCCCCGGGGTCCGGCGCCTCGAACAA
Found at i:74847 original size:2 final size:2
Alignment explanation
Indices: 74836--74876 Score: 68
Period size: 2 Copynumber: 21.5 Consensus size: 2
74826 AGTGTCAGCA
74836 TG TG -G TG TG TG TG TG TG TG TG TG TG TG TG TG TG -G TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
74876 T
1 T
74877 AGGTGTCACT
Statistics
Matches: 37, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
1 2 0.05
2 35 0.95
ACGTcount: A:0.00, C:0.00, G:0.51, T:0.49
Consensus pattern (2 bp):
TG
Left flanking sequence: Indices 74336 -- 74835
GTCGCGGTGCGTGGGCACCGCCGCCTCGAGCTCGGTGCGGGTGAACTTGCACACCGCCAGCTTAT
CCACGGGCCCCTTTTTGCGCTGGGGCCGCGGCGGCTTCAACTCGGCGTAGAACCGGTCGATGTGG
CGCTGGAGCTGGGCGAGCATTGGCTTCTGCTCGTGGTTGATGTGGCGGATCTCGGCCTCGAGCCG
CTGGCGCTCGGCCTCGAGCTGGTCGAGCCGGGCGGCGATGGGGGACGACGCGTCCCCGGGGGCAG
GGGCGGCCGCCAAGTCGAGCACCGCCACCACCAGGTGCACATGGTGCCGGAACTGCACCGCCACG
GCGTCGAGCTGGCGCCGGGTGTTGGCCACCGCGTCCGGGTCGAGCCCCAGTGCGTGGAGCCTGTA
CACGTCCTGGCGGAGCTGGAGGTACTGGGCCAGGAGCTTGTCGTAGTTGGCGACGGTGTGGGCCA
CCAGCTCTTCGAGGAGCTGGGACTGTTTGGGTGTTAGTGTCAGCA
Right flanking sequence: Indices 74877 -- 75376
AGGTGTCACTGAGGTATAAGTGAGTAAGGAGGGAGGTAACTGGTGAGTAACTGGGAGGTGATTGG
GAGTAACTCTGAGTTAACTGAGTAGTAACTGGGAGTTAACTGGGGGTAACTGGGATTTAAAGGGA
GTTAACTGGGAGGTAACTGGGATTTTCCTGAGTCGTAACTGAGTAGAACTGAGTAGTAACCGAGA
GTGGACTAAACAGTGGGTGTTTGTTAAACGTGTAATGTCCAACAGTTAGCGACTGGGAAATTCAA
ACACTTATGGTAATATTCAAACAGTAAACACTGATTTTCACCGGATCGTCCTCTTGAATGCTTCG
AGATGGCCACTGGTTGTGTGCCTAAACTAGTTCACTTCTTGTCCTGGATATTCTGTAACACTGGT
CTGTGGTACCTGTGTCTCCTGCTCCACTCTGTGCTCGCTCTGTGCTCGCTCTGTGCTCGCTCGTT
CTCTCTGTGCCCTGCCGGTTTGTGCCTGTGCTCGCGCGCACACCG
Found at i:74993 original size:10 final size:11
Alignment explanation
Indices: 74907--75028 Score: 92
Period size: 11 Copynumber: 11.4 Consensus size: 11
74897 TGAGTAAGGA
74907 GGGAGGTAACT
1 GGGAGGTAACT
74918 GGTGA-GTAACT
1 GG-GAGGTAACT
* *
74929 GGGAGGTGATT
1 GGGAGGTAACT
74940 GGGA-GTAACT
1 GGGAGGTAACT
** *
74950 CTGAGTTAACT
1 GGGAGGTAACT
*
74961 GAGTA-GTAACT
1 G-GGAGGTAACT
*
74972 GGGAGTTAACT
1 GGGAGGTAACT
74983 GGG-GGTAACT
1 GGGAGGTAACT
** *
74993 GGGATTTAA-A
1 GGGAGGTAACT
*
75003 GGGAGTTAACT
1 GGGAGGTAACT
75014 GGGAGGTAACT
1 GGGAGGTAACT
75025 GGGA
1 GGGA
75029 TTTTCCTGAG
Statistics
Matches: 84, Mismatches: 20, Indels: 14
0.71 0.17 0.12
Matches are distributed among these distances:
10 27 0.32
11 54 0.64
12 3 0.04
ACGTcount: A:0.28, C:0.08, G:0.39, T:0.25
Consensus pattern (11 bp):
GGGAGGTAACT
Left flanking sequence: Indices 74407 -- 74906
GCCCCTTTTTGCGCTGGGGCCGCGGCGGCTTCAACTCGGCGTAGAACCGGTCGATGTGGCGCTGG
AGCTGGGCGAGCATTGGCTTCTGCTCGTGGTTGATGTGGCGGATCTCGGCCTCGAGCCGCTGGCG
CTCGGCCTCGAGCTGGTCGAGCCGGGCGGCGATGGGGGACGACGCGTCCCCGGGGGCAGGGGCGG
CCGCCAAGTCGAGCACCGCCACCACCAGGTGCACATGGTGCCGGAACTGCACCGCCACGGCGTCG
AGCTGGCGCCGGGTGTTGGCCACCGCGTCCGGGTCGAGCCCCAGTGCGTGGAGCCTGTACACGTC
CTGGCGGAGCTGGAGGTACTGGGCCAGGAGCTTGTCGTAGTTGGCGACGGTGTGGGCCACCAGCT
CTTCGAGGAGCTGGGACTGTTTGGGTGTTAGTGTCAGCATGTGGTGTGTGTGTGTGTGTGTGTGT
GTGTGTGGTGTGTGTAGGTGTCACTGAGGTATAAGTGAGTAAGGA
Right flanking sequence: Indices 75029 -- 75528
TTTTCCTGAGTCGTAACTGAGTAGAACTGAGTAGTAACCGAGAGTGGACTAAACAGTGGGTGTTT
GTTAAACGTGTAATGTCCAACAGTTAGCGACTGGGAAATTCAAACACTTATGGTAATATTCAAAC
AGTAAACACTGATTTTCACCGGATCGTCCTCTTGAATGCTTCGAGATGGCCACTGGTTGTGTGCC
TAAACTAGTTCACTTCTTGTCCTGGATATTCTGTAACACTGGTCTGTGGTACCTGTGTCTCCTGC
TCCACTCTGTGCTCGCTCTGTGCTCGCTCTGTGCTCGCTCGTTCTCTCTGTGCCCTGCCGGTTTG
TGCCTGTGCTCGCGCGCACACCGCGCACACCAAATCGGTGCGGCGTGTGCTTGCTTGCCATGGAC
GACCACTACCGCCTCATCGAATTGCTCGGGCTGGCCAGCCCCAGCGACGTGGACGACCACCTCCG
CGACGAGTACGTCACCAACGAGGCCGCCCCCGAGTCCGTCTACGT
Found at i:75022 original size:32 final size:31
Alignment explanation
Indices: 74972--75031 Score: 111
Period size: 31 Copynumber: 1.9 Consensus size: 31
74962 AGTAGTAACT
74972 GGGAGTTAACTGGGGGTAACTGGGATTTAAA
1 GGGAGTTAACTGGGGGTAACTGGGATTTAAA
75003 GGGAGTTAACTGGGAGGTAACTGGGATTT
1 GGGAGTTAACTGGG-GGTAACTGGGATTT
75032 TCCTGAGTCG
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
31 14 0.50
32 14 0.50
ACGTcount: A:0.27, C:0.07, G:0.40, T:0.27
Consensus pattern (31 bp):
GGGAGTTAACTGGGGGTAACTGGGATTTAAA
Left flanking sequence: Indices 74472 -- 74971
AGCTGGGCGAGCATTGGCTTCTGCTCGTGGTTGATGTGGCGGATCTCGGCCTCGAGCCGCTGGCG
CTCGGCCTCGAGCTGGTCGAGCCGGGCGGCGATGGGGGACGACGCGTCCCCGGGGGCAGGGGCGG
CCGCCAAGTCGAGCACCGCCACCACCAGGTGCACATGGTGCCGGAACTGCACCGCCACGGCGTCG
AGCTGGCGCCGGGTGTTGGCCACCGCGTCCGGGTCGAGCCCCAGTGCGTGGAGCCTGTACACGTC
CTGGCGGAGCTGGAGGTACTGGGCCAGGAGCTTGTCGTAGTTGGCGACGGTGTGGGCCACCAGCT
CTTCGAGGAGCTGGGACTGTTTGGGTGTTAGTGTCAGCATGTGGTGTGTGTGTGTGTGTGTGTGT
GTGTGTGGTGTGTGTAGGTGTCACTGAGGTATAAGTGAGTAAGGAGGGAGGTAACTGGTGAGTAA
CTGGGAGGTGATTGGGAGTAACTCTGAGTTAACTGAGTAGTAACT
Right flanking sequence: Indices 75032 -- 75531
TCCTGAGTCGTAACTGAGTAGAACTGAGTAGTAACCGAGAGTGGACTAAACAGTGGGTGTTTGTT
AAACGTGTAATGTCCAACAGTTAGCGACTGGGAAATTCAAACACTTATGGTAATATTCAAACAGT
AAACACTGATTTTCACCGGATCGTCCTCTTGAATGCTTCGAGATGGCCACTGGTTGTGTGCCTAA
ACTAGTTCACTTCTTGTCCTGGATATTCTGTAACACTGGTCTGTGGTACCTGTGTCTCCTGCTCC
ACTCTGTGCTCGCTCTGTGCTCGCTCTGTGCTCGCTCGTTCTCTCTGTGCCCTGCCGGTTTGTGC
CTGTGCTCGCGCGCACACCGCGCACACCAAATCGGTGCGGCGTGTGCTTGCTTGCCATGGACGAC
CACTACCGCCTCATCGAATTGCTCGGGCTGGCCAGCCCCAGCGACGTGGACGACCACCTCCGCGA
CGAGTACGTCACCAACGAGGCCGCCCCCGAGTCCGTCTACGTGGC
Found at i:75050 original size:11 final size:11
Alignment explanation
Indices: 75034--75066 Score: 50
Period size: 10 Copynumber: 3.1 Consensus size: 11
75024 TGGGATTTTC
*
75034 CTGAGTCGTAA
1 CTGAGTAGTAA
75045 CTGAGTAG-AA
1 CTGAGTAGTAA
75055 CTGAGTAGTAA
1 CTGAGTAGTAA
75066 C
1 C
75067 CGAGAGTGGA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
10 10 0.50
11 10 0.50
ACGTcount: A:0.33, C:0.15, G:0.27, T:0.24
Consensus pattern (11 bp):
CTGAGTAGTAA
Left flanking sequence: Indices 74534 -- 75033
GCGCTCGGCCTCGAGCTGGTCGAGCCGGGCGGCGATGGGGGACGACGCGTCCCCGGGGGCAGGGG
CGGCCGCCAAGTCGAGCACCGCCACCACCAGGTGCACATGGTGCCGGAACTGCACCGCCACGGCG
TCGAGCTGGCGCCGGGTGTTGGCCACCGCGTCCGGGTCGAGCCCCAGTGCGTGGAGCCTGTACAC
GTCCTGGCGGAGCTGGAGGTACTGGGCCAGGAGCTTGTCGTAGTTGGCGACGGTGTGGGCCACCA
GCTCTTCGAGGAGCTGGGACTGTTTGGGTGTTAGTGTCAGCATGTGGTGTGTGTGTGTGTGTGTG
TGTGTGTGTGGTGTGTGTAGGTGTCACTGAGGTATAAGTGAGTAAGGAGGGAGGTAACTGGTGAG
TAACTGGGAGGTGATTGGGAGTAACTCTGAGTTAACTGAGTAGTAACTGGGAGTTAACTGGGGGT
AACTGGGATTTAAAGGGAGTTAACTGGGAGGTAACTGGGATTTTC
Right flanking sequence: Indices 75067 -- 75566
CGAGAGTGGACTAAACAGTGGGTGTTTGTTAAACGTGTAATGTCCAACAGTTAGCGACTGGGAAA
TTCAAACACTTATGGTAATATTCAAACAGTAAACACTGATTTTCACCGGATCGTCCTCTTGAATG
CTTCGAGATGGCCACTGGTTGTGTGCCTAAACTAGTTCACTTCTTGTCCTGGATATTCTGTAACA
CTGGTCTGTGGTACCTGTGTCTCCTGCTCCACTCTGTGCTCGCTCTGTGCTCGCTCTGTGCTCGC
TCGTTCTCTCTGTGCCCTGCCGGTTTGTGCCTGTGCTCGCGCGCACACCGCGCACACCAAATCGG
TGCGGCGTGTGCTTGCTTGCCATGGACGACCACTACCGCCTCATCGAATTGCTCGGGCTGGCCAG
CCCCAGCGACGTGGACGACCACCTCCGCGACGAGTACGTCACCAACGAGGCCGCCCCCGAGTCCG
TCTACGTGGCCCACTGCCTCCTCATAGCCTACACCTTCCCCGCGC
Found at i:75309 original size:11 final size:11
Alignment explanation
Indices: 75293--75328 Score: 72
Period size: 11 Copynumber: 3.3 Consensus size: 11
75283 TCCTGCTCCA
75293 CTCTGTGCTCG
1 CTCTGTGCTCG
75304 CTCTGTGCTCG
1 CTCTGTGCTCG
75315 CTCTGTGCTCG
1 CTCTGTGCTCG
75326 CTC
1 CTC
75329 GTTCTCTCTG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 25 1.00
ACGTcount: A:0.00, C:0.39, G:0.25, T:0.36
Consensus pattern (11 bp):
CTCTGTGCTCG
Left flanking sequence: Indices 74793 -- 75292
AGCTCTTCGAGGAGCTGGGACTGTTTGGGTGTTAGTGTCAGCATGTGGTGTGTGTGTGTGTGTGT
GTGTGTGTGTGGTGTGTGTAGGTGTCACTGAGGTATAAGTGAGTAAGGAGGGAGGTAACTGGTGA
GTAACTGGGAGGTGATTGGGAGTAACTCTGAGTTAACTGAGTAGTAACTGGGAGTTAACTGGGGG
TAACTGGGATTTAAAGGGAGTTAACTGGGAGGTAACTGGGATTTTCCTGAGTCGTAACTGAGTAG
AACTGAGTAGTAACCGAGAGTGGACTAAACAGTGGGTGTTTGTTAAACGTGTAATGTCCAACAGT
TAGCGACTGGGAAATTCAAACACTTATGGTAATATTCAAACAGTAAACACTGATTTTCACCGGAT
CGTCCTCTTGAATGCTTCGAGATGGCCACTGGTTGTGTGCCTAAACTAGTTCACTTCTTGTCCTG
GATATTCTGTAACACTGGTCTGTGGTACCTGTGTCTCCTGCTCCA
Right flanking sequence: Indices 75329 -- 75828
GTTCTCTCTGTGCCCTGCCGGTTTGTGCCTGTGCTCGCGCGCACACCGCGCACACCAAATCGGTG
CGGCGTGTGCTTGCTTGCCATGGACGACCACTACCGCCTCATCGAATTGCTCGGGCTGGCCAGCC
CCAGCGACGTGGACGACCACCTCCGCGACGAGTACGTCACCAACGAGGCCGCCCCCGAGTCCGTC
TACGTGGCCCACTGCCTCCTCATAGCCTACACCTTCCCCGCGCTGACCCTGGCCGCCACGTTGGC
GCGGTGGGTGCGCACATTGGCGGCGGTGCCAATGCACCCGGTGCCCGCCAGCGAGTGCTCCGAAC
TTGTCGCCAGCACCGTCGACCGGTGCCGCACCGACCACCACTTCACCGACGCCACCACCGACGGG
TGGATTCGCGCCAAGATCCACCACGACGCCGGGTACTGCCTGGACGTCGACCACTACGCCGAGTT
GCTCAAGCTCCTGTTCGACCCGGACCACCCGCTGGCCCACCCGCT
Found at i:75825 original size:12 final size:12
Alignment explanation
Indices: 75808--75833 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
75798 TCGACCCGGA
75808 CCACCCGCTGGC
1 CCACCCGCTGGC
75820 CCACCCGCTGGC
1 CCACCCGCTGGC
75832 CC
1 CC
75834 TCGAGCAGTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.08, C:0.62, G:0.23, T:0.08
Consensus pattern (12 bp):
CCACCCGCTGGC
Left flanking sequence: Indices 75308 -- 75807
GTGCTCGCTCTGTGCTCGCTCGTTCTCTCTGTGCCCTGCCGGTTTGTGCCTGTGCTCGCGCGCAC
ACCGCGCACACCAAATCGGTGCGGCGTGTGCTTGCTTGCCATGGACGACCACTACCGCCTCATCG
AATTGCTCGGGCTGGCCAGCCCCAGCGACGTGGACGACCACCTCCGCGACGAGTACGTCACCAAC
GAGGCCGCCCCCGAGTCCGTCTACGTGGCCCACTGCCTCCTCATAGCCTACACCTTCCCCGCGCT
GACCCTGGCCGCCACGTTGGCGCGGTGGGTGCGCACATTGGCGGCGGTGCCAATGCACCCGGTGC
CCGCCAGCGAGTGCTCCGAACTTGTCGCCAGCACCGTCGACCGGTGCCGCACCGACCACCACTTC
ACCGACGCCACCACCGACGGGTGGATTCGCGCCAAGATCCACCACGACGCCGGGTACTGCCTGGA
CGTCGACCACTACGCCGAGTTGCTCAAGCTCCTGTTCGACCCGGA
Right flanking sequence: Indices 75834 -- 76333
TCGAGCAGTGGTACCGCGGCGTGCTCTTGCCCTACCGCTACTACCACTCCCACTGTGCCGACCCG
GTGCTGTTGCGCGACTACTTGCACCCCGACACCCACGCGCACCAGTTCGCGGTGGTGCGCGGCGC
CAGCACCGACGCCGGCGCGTGGTTGGCCCACGCCGTGCTCCCGCTCGCGGGGCACCACGGGGGCG
ACCTTGCCCCGCTCGAGCACCTGCTCTTTGACGACGAGCCCGAGGACGTGGTGGCGCATTTCGAG
CGGTTGGAGACGGTGTTCGCGGCAATGGTGGAGGCCGAGCTCGAGCTCGACGCCTACCGCCCGCT
CTTGCGGCTCTTTTTGGCCCAGGTGTACTTTCTCAGCGTCCACGAGGGGGGCTTGGCCCAGCGGT
TGCTGCTGGTGAAGCTCCTCCGGGTGTACGACGTGGTGGCCCGCACGCTCGACTTGTTTGAGCTG
GCGGCCGAGCCCCTCGACGTGGCCCAGGTGGTGCTGGGGGCCCCC
Found at i:77965 original size:22 final size:22
Alignment explanation
Indices: 77939--77996 Score: 75
Period size: 21 Copynumber: 2.7 Consensus size: 22
77929 CCTGTTTTCG
* *
77939 GAGTAGAGAAAGCTTGTTC-CT
1 GAGTAGAGAAGGCTTGTTCGCA
77960 GAAGTAGAGAAGGC-TGTTCGCA
1 G-AGTAGAGAAGGCTTGTTCGCA
77982 GAGTAGAGAAGGCTT
1 GAGTAGAGAAGGCTT
77997 ATTACCGGAG
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
21 18 0.56
22 14 0.44
ACGTcount: A:0.31, C:0.12, G:0.34, T:0.22
Consensus pattern (22 bp):
GAGTAGAGAAGGCTTGTTCGCA
Left flanking sequence: Indices 77439 -- 77938
GACTCGCGGTTCTCCTCAAGCAGCGCACGATTCTCGGGCGCTGTCTCGCCGCCATGGACCCCAGC
GACTGCCAGCGCATCGTCGTGGGCCAGTGGCTGCTGGTGAACGCGCAGTTGGCGCTGTTCTACTC
GCCCGAGGCCTTGCAGGTGGTGACCGACTGCCAGTTTGTCGCCCAGCAGGCGCCGTCGCTGGTCC
AGGACGAGGTCCACCAGTTGACGCTGTCGCTCTTGAGCGATGCGTCCACCACGTCGACCCAGGCG
TCGCGCAACTTGCAGAAGATGTTTGTGCTGGGGCTCGGGTGGGCCATTGGTGCCAACAAGGGGTG
ATATAGCATTACAGGGTGGATCGGGTGGTGTACAGGATAGATGGGTGTTTTAGCTGGGGGGGGCC
GCAAGCGGCGCCCCCCCAGACCCCCCCAACGCCTTGCGTGGGGCTTACTGTTGATAGAGTTAATG
AATAGTACGACTGGAGACTTAGCAGGGTGAGGAGGCCTGTTTTCG
Right flanking sequence: Indices 77997 -- 78496
ATTACCGGAGTAGAGGACTGTTTCCGGAGTAGAGACGGCTTATATGGTTCTGCTTGTTATGTAGA
GTTCCTTAAGACTAGTTCCTTAGGACTTCTGGTTATTCGGGCGGTTTGTCTGCATGGTTTGGTGA
CGTGCCAATTGGTGACGCCATGACATGTCACTAACCAACTCTATTTGAGTGACTTTGACAGAAGG
GACAAAAGCGCACCTCAGGGACAGCAAACGCGTGGAACGCACCAGAACCTGCTTTGAGACTGTGG
GCGTGTGGCTTCTTCGTTTCACTCAGTGCTGACGTGTGTGGCCAACATGAAACAAGGACCAACAA
TAGACACAATCCACGAAATAAACAATACGAGTAGGAAGAAGCCAAACCAGACAGCGAAACAGGCC
AGTGAAACACACATATCTCTTTTGCACAGCCCAACTCACTTACTTTTTGGCGGCTTTGTACTCTA
GGTCTACGACTATCTCTGCGACCACCTCTCCGACCACCTCTCCGA
Found at i:78010 original size:22 final size:21
Alignment explanation
Indices: 77937--78039 Score: 79
Period size: 22 Copynumber: 4.9 Consensus size: 21
77927 GGCCTGTTTT
* *
77937 CGGAGTAGAGAAAGCTTGTTC
1 CGGAGTAGAGAAGGCTTATTC
* *
77958 CTGAAGTAGAGAAGGC-TGTTC
1 C-GGAGTAGAGAAGGCTTATTC
*
77979 GCAGAGTAGAGAAGGCTTATTAC
1 -CGGAGTAGAGAAGGCTTATT-C
*
78002 CGGAGTAGAG--GACTGT-TTC
1 CGGAGTAGAGAAGGCT-TATTC
*
78021 CGGAGTAGAGACGGCTTAT
1 CGGAGTAGAGAAGGCTTAT
78040 ATGGTTCTGC
Statistics
Matches: 66, Mismatches: 8, Indels: 16
0.73 0.09 0.18
Matches are distributed among these distances:
19 11 0.17
20 6 0.09
21 23 0.35
22 25 0.38
23 1 0.02
ACGTcount: A:0.28, C:0.15, G:0.34, T:0.23
Consensus pattern (21 bp):
CGGAGTAGAGAAGGCTTATTC
Left flanking sequence: Indices 77437 -- 77936
GAGACTCGCGGTTCTCCTCAAGCAGCGCACGATTCTCGGGCGCTGTCTCGCCGCCATGGACCCCA
GCGACTGCCAGCGCATCGTCGTGGGCCAGTGGCTGCTGGTGAACGCGCAGTTGGCGCTGTTCTAC
TCGCCCGAGGCCTTGCAGGTGGTGACCGACTGCCAGTTTGTCGCCCAGCAGGCGCCGTCGCTGGT
CCAGGACGAGGTCCACCAGTTGACGCTGTCGCTCTTGAGCGATGCGTCCACCACGTCGACCCAGG
CGTCGCGCAACTTGCAGAAGATGTTTGTGCTGGGGCTCGGGTGGGCCATTGGTGCCAACAAGGGG
TGATATAGCATTACAGGGTGGATCGGGTGGTGTACAGGATAGATGGGTGTTTTAGCTGGGGGGGG
CCGCAAGCGGCGCCCCCCCAGACCCCCCCAACGCCTTGCGTGGGGCTTACTGTTGATAGAGTTAA
TGAATAGTACGACTGGAGACTTAGCAGGGTGAGGAGGCCTGTTTT
Right flanking sequence: Indices 78040 -- 78539
ATGGTTCTGCTTGTTATGTAGAGTTCCTTAAGACTAGTTCCTTAGGACTTCTGGTTATTCGGGCG
GTTTGTCTGCATGGTTTGGTGACGTGCCAATTGGTGACGCCATGACATGTCACTAACCAACTCTA
TTTGAGTGACTTTGACAGAAGGGACAAAAGCGCACCTCAGGGACAGCAAACGCGTGGAACGCACC
AGAACCTGCTTTGAGACTGTGGGCGTGTGGCTTCTTCGTTTCACTCAGTGCTGACGTGTGTGGCC
AACATGAAACAAGGACCAACAATAGACACAATCCACGAAATAAACAATACGAGTAGGAAGAAGCC
AAACCAGACAGCGAAACAGGCCAGTGAAACACACATATCTCTTTTGCACAGCCCAACTCACTTAC
TTTTTGGCGGCTTTGTACTCTAGGTCTACGACTATCTCTGCGACCACCTCTCCGACCACCTCTCC
GACTACCTCTGCGACTACCACCCATGGACAACACTGAACCCGTGA
Found at i:78030 original size:41 final size:41
Alignment explanation
Indices: 77925--78039 Score: 108
Period size: 43 Copynumber: 2.8 Consensus size: 41
77915 GCAGGGTGAG
* * * *
77925 GAGGCCTGTTTTCGGAGTAGAGAAAGCTTGTTCCTGAAGTA
1 GAGGACTGTTTCCGGAGTAGAGAAGGCTTATTCCTGAAGTA
* * *
77966 GAGAAGGCTG-TTCGCAGAGTAGAGAAGGCTTATTACC-GGAGTA
1 GAG--GACTGTTTC-CGGAGTAGAGAAGGCTTATT-CCTGAAGTA
*
78009 GAGGACTGTTTCCGGAGTAGAGACGGCTTAT
1 GAGGACTGTTTCCGGAGTAGAGAAGGCTTAT
78040 ATGGTTCTGC
Statistics
Matches: 60, Mismatches: 9, Indels: 10
0.76 0.11 0.13
Matches are distributed among these distances:
41 24 0.40
42 5 0.08
43 29 0.48
44 2 0.03
ACGTcount: A:0.26, C:0.15, G:0.34, T:0.25
Consensus pattern (41 bp):
GAGGACTGTTTCCGGAGTAGAGAAGGCTTATTCCTGAAGTA
Left flanking sequence: Indices 77425 -- 77924
CGACGCGGGGGCGAGACTCGCGGTTCTCCTCAAGCAGCGCACGATTCTCGGGCGCTGTCTCGCCG
CCATGGACCCCAGCGACTGCCAGCGCATCGTCGTGGGCCAGTGGCTGCTGGTGAACGCGCAGTTG
GCGCTGTTCTACTCGCCCGAGGCCTTGCAGGTGGTGACCGACTGCCAGTTTGTCGCCCAGCAGGC
GCCGTCGCTGGTCCAGGACGAGGTCCACCAGTTGACGCTGTCGCTCTTGAGCGATGCGTCCACCA
CGTCGACCCAGGCGTCGCGCAACTTGCAGAAGATGTTTGTGCTGGGGCTCGGGTGGGCCATTGGT
GCCAACAAGGGGTGATATAGCATTACAGGGTGGATCGGGTGGTGTACAGGATAGATGGGTGTTTT
AGCTGGGGGGGGCCGCAAGCGGCGCCCCCCCAGACCCCCCCAACGCCTTGCGTGGGGCTTACTGT
TGATAGAGTTAATGAATAGTACGACTGGAGACTTAGCAGGGTGAG
Right flanking sequence: Indices 78040 -- 78539
ATGGTTCTGCTTGTTATGTAGAGTTCCTTAAGACTAGTTCCTTAGGACTTCTGGTTATTCGGGCG
GTTTGTCTGCATGGTTTGGTGACGTGCCAATTGGTGACGCCATGACATGTCACTAACCAACTCTA
TTTGAGTGACTTTGACAGAAGGGACAAAAGCGCACCTCAGGGACAGCAAACGCGTGGAACGCACC
AGAACCTGCTTTGAGACTGTGGGCGTGTGGCTTCTTCGTTTCACTCAGTGCTGACGTGTGTGGCC
AACATGAAACAAGGACCAACAATAGACACAATCCACGAAATAAACAATACGAGTAGGAAGAAGCC
AAACCAGACAGCGAAACAGGCCAGTGAAACACACATATCTCTTTTGCACAGCCCAACTCACTTAC
TTTTTGGCGGCTTTGTACTCTAGGTCTACGACTATCTCTGCGACCACCTCTCCGACCACCTCTCC
GACTACCTCTGCGACTACCACCCATGGACAACACTGAACCCGTGA
Found at i:78510 original size:12 final size:12
Alignment explanation
Indices: 78458--78513 Score: 67
Period size: 12 Copynumber: 4.7 Consensus size: 12
78448 TCTAGGTCTA
* *
78458 CGACTATCTCTG
1 CGACTACCTCTC
*
78470 CGACCACCTCTC
1 CGACTACCTCTC
*
78482 CGACCACCTCTC
1 CGACTACCTCTC
*
78494 CGACTACCTCTG
1 CGACTACCTCTC
78506 CGACTACC
1 CGACTACC
78514 ACCCATGGAC
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 39 1.00
ACGTcount: A:0.18, C:0.48, G:0.12, T:0.21
Consensus pattern (12 bp):
CGACTACCTCTC
Left flanking sequence: Indices 77958 -- 78457
CTGAAGTAGAGAAGGCTGTTCGCAGAGTAGAGAAGGCTTATTACCGGAGTAGAGGACTGTTTCCG
GAGTAGAGACGGCTTATATGGTTCTGCTTGTTATGTAGAGTTCCTTAAGACTAGTTCCTTAGGAC
TTCTGGTTATTCGGGCGGTTTGTCTGCATGGTTTGGTGACGTGCCAATTGGTGACGCCATGACAT
GTCACTAACCAACTCTATTTGAGTGACTTTGACAGAAGGGACAAAAGCGCACCTCAGGGACAGCA
AACGCGTGGAACGCACCAGAACCTGCTTTGAGACTGTGGGCGTGTGGCTTCTTCGTTTCACTCAG
TGCTGACGTGTGTGGCCAACATGAAACAAGGACCAACAATAGACACAATCCACGAAATAAACAAT
ACGAGTAGGAAGAAGCCAAACCAGACAGCGAAACAGGCCAGTGAAACACACATATCTCTTTTGCA
CAGCCCAACTCACTTACTTTTTGGCGGCTTTGTACTCTAGGTCTA
Right flanking sequence: Indices 78514 -- 79013
ACCCATGGACAACACTGAACCCGTGACACTAACAATAGACCAGTCTCCAGGCACTGCTCAATGGG
CAGCAGTTTTATGCACCGGTGCCTGGGTGCCTGCAAGGACGCATCGTTGTCCTGGTCCAAGCCAC
GGCCCTGCCACCGGCCCTGCCACCGGCCCGGCCACCAAAAGCTCACCGAGCACACACTACCCACC
GCCAGTCGTAAAACACACCCATAGTAACCCTAATTAACCTCGTACTCGACCCCAGGCCGCCCCCG
GCCTCGTAAGCTGATCTTTACGCGTACACCACCGTGCATGGCCTGAAACACCACTAAAACGAGAT
TCATTCTGAAACGGTCCCAGGACACCACCACCACCACGGAGCTCGAATGGAGCCCGCGTCCTCTG
GTTTCTCACACCCACCGTCGCTGGTGCTCCCCTTCTCTCCATTGGCCCCATTAGCCACACTACTC
CGCACTACCGTGCCCCCATGTAGGTCGGGTATCTGGCCGTCGCTG
Found at i:78660 original size:12 final size:12
Alignment explanation
Indices: 78639--78679 Score: 66
Period size: 12 Copynumber: 3.5 Consensus size: 12
78629 CCTGGTCCAA
78639 GCCA-CGGCCCT
1 GCCACCGGCCCT
78650 GCCACCGGCCCT
1 GCCACCGGCCCT
*
78662 GCCACCGGCCCG
1 GCCACCGGCCCT
78674 GCCACC
1 GCCACC
78680 AAAAGCTCAC
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
11 4 0.14
12 24 0.86
ACGTcount: A:0.10, C:0.59, G:0.27, T:0.05
Consensus pattern (12 bp):
GCCACCGGCCCT
Left flanking sequence: Indices 78139 -- 78638
TGACGCCATGACATGTCACTAACCAACTCTATTTGAGTGACTTTGACAGAAGGGACAAAAGCGCA
CCTCAGGGACAGCAAACGCGTGGAACGCACCAGAACCTGCTTTGAGACTGTGGGCGTGTGGCTTC
TTCGTTTCACTCAGTGCTGACGTGTGTGGCCAACATGAAACAAGGACCAACAATAGACACAATCC
ACGAAATAAACAATACGAGTAGGAAGAAGCCAAACCAGACAGCGAAACAGGCCAGTGAAACACAC
ATATCTCTTTTGCACAGCCCAACTCACTTACTTTTTGGCGGCTTTGTACTCTAGGTCTACGACTA
TCTCTGCGACCACCTCTCCGACCACCTCTCCGACTACCTCTGCGACTACCACCCATGGACAACAC
TGAACCCGTGACACTAACAATAGACCAGTCTCCAGGCACTGCTCAATGGGCAGCAGTTTTATGCA
CCGGTGCCTGGGTGCCTGCAAGGACGCATCGTTGTCCTGGTCCAA
Right flanking sequence: Indices 78680 -- 79179
AAAAGCTCACCGAGCACACACTACCCACCGCCAGTCGTAAAACACACCCATAGTAACCCTAATTA
ACCTCGTACTCGACCCCAGGCCGCCCCCGGCCTCGTAAGCTGATCTTTACGCGTACACCACCGTG
CATGGCCTGAAACACCACTAAAACGAGATTCATTCTGAAACGGTCCCAGGACACCACCACCACCA
CGGAGCTCGAATGGAGCCCGCGTCCTCTGGTTTCTCACACCCACCGTCGCTGGTGCTCCCCTTCT
CTCCATTGGCCCCATTAGCCACACTACTCCGCACTACCGTGCCCCCATGTAGGTCGGGTATCTGG
CCGTCGCTGGCGACCACGGGGTCGCTGGTACCCCCCAGGCCGCCACCGGCCCAAACCGTAGCAAA
ACACGACGAAAGCCCCTGGCCACCACCCCCACCGCCCCCGCGCACCCCCGGGCACCTCTCCTCCC
CTCCCGAGGCCTCCCTTGCCACCGCTACGAACCGTTAAAAACGCA
Found at i:79559 original size:12 final size:12
Alignment explanation
Indices: 79542--79580 Score: 78
Period size: 12 Copynumber: 3.2 Consensus size: 12
79532 TGACTACTGG
79542 CACGGGGCACGC
1 CACGGGGCACGC
79554 CACGGGGCACGC
1 CACGGGGCACGC
79566 CACGGGGCACGC
1 CACGGGGCACGC
79578 CAC
1 CAC
79581 TCTAGGACGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 27 1.00
ACGTcount: A:0.18, C:0.44, G:0.38, T:0.00
Consensus pattern (12 bp):
CACGGGGCACGC
Left flanking sequence: Indices 79042 -- 79541
GGCCGCCACCGGCCCAAACCGTAGCAAAACACGACGAAAGCCCCTGGCCACCACCCCCACCGCCC
CCGCGCACCCCCGGGCACCTCTCCTCCCCTCCCGAGGCCTCCCTTGCCACCGCTACGAACCGTTA
AAAACGCACCGAACGCGTCAGCCACCGGCACACCAGCGTCTCTTGCATGCCACTTGCATGAGGCC
AAACTCCGAATAGTCGAAACCCGCCTGGGTTTCGTGGAGGTGGCCTGGGTCTGAAAGCCGCTTCC
GCGGCGACCATTTTTTGTGTGGGGTCTATCCCCGGTTTCGGTCCCCACTGCCGCCCAATGGGGAA
ACTAGCCCAGAGCAAGAGAAGGAAAAAGAAAGCCCGCCAACCCGCGCGAGGTGGTGGCACGCGGA
CCCGACGGATCCATCGGACGTGGGTGGTCTCTGCGAACCGGCCACGCTCTGGTCCACCTGCCCCT
GCGATGTCGTACTTGCTACGTGGTGGGGATACAGGTGACTACTGG
Right flanking sequence: Indices 79581 -- 80080
TCTAGGACGGCTAGCTTTGTAACCGATGGCAACAATGGCGCCTGCGAGCACACCAGGTGCCTGCA
CCGCCCCCCTGAACGCGTCCGACCCCTGTACGCGCCGTCTCTGTCGGTACCGGCGACCGCTAAAT
CTCGCCGATCTAAGTTCGTAAATGGCAATATATGGCGCAAACCGGCAGTGTGGTTTAATCACGCC
GACGCCTGCACACAGAGCGACCACTCGAGTCGACCAGAGCCCGGGGGCCCACTGGGTTGCTGTCC
GTGCCAACCGAAGGGGGGACCGCACTGCTTTGGAACTGCACTGCTTGGCGGCCCAGCACCTACCC
CTCACCTGTCCACGGGTATCGCGGGCCCGGTCGAGCCGGCTCTTGTTAGCGTGTGTGCAGGCGAG
AGGCTCAATCCCCAGTCGTGCGCGTACCAGGCGTATATCGAGATCGAGGAACGTGACTAGGCAGT
CCAGGCACGCACGCCGTGGGCCGGTGGCGGGCACGGCAAAGGGCA
Found at i:82607 original size:17 final size:18
Alignment explanation
Indices: 82585--82673 Score: 116
Period size: 17 Copynumber: 5.2 Consensus size: 18
82575 TTTAGTACTG
82585 TTTTTAGCACTGC-ACCC
1 TTTTTAGCACTGCTACCC
82602 TTTTTAGCACTG-TACCC
1 TTTTTAGCACTGCTACCC
*
82619 TTTTAAGCAC-GCTACCC
1 TTTTTAGCACTGCTACCC
82636 TTTTTAGCACT-CTACCC
1 TTTTTAGCACTGCTACCC
* *
82653 TTCTAAGCACTGCTA-CC
1 TTTTTAGCACTGCTACCC
82670 TTTT
1 TTTT
82674 AGCCCTCATT
Statistics
Matches: 63, Mismatches: 5, Indels: 8
0.83 0.07 0.11
Matches are distributed among these distances:
16 1 0.02
17 59 0.94
18 3 0.05
ACGTcount: A:0.19, C:0.33, G:0.10, T:0.38
Consensus pattern (18 bp):
TTTTTAGCACTGCTACCC
Left flanking sequence: Indices 82085 -- 82584
TGATGTGGCTGTGCTGGTTTGTCCCTGTTGGTTTGTTCCCCTTTGCCTGGTCGTCGTACCCCCAC
GTCTCGTGGGCTGGTCCTTGCTTCTCGGGCTTGGCTGTCGGCTTTGGCTTCTGTGGGTTGTACAA
CCCCGCCAACAACTACATCGTTGACTCGTACCAGCACTACGCTGCCCTGGCTTTGGCTGCCAAGA
CGTTTGTGCGGTCCGTGTGGGGTGCTGCCTGCCCTCTTTTCACCATTCAGATGTACAACAAGTTG
GGCTACGAGTGGGCCACTTCTTTGATGGGCTTCATTTCGTTGGCTTGCTGTGCCATTCCCTACTG
CTTCTACATCTGGGGCGCCAAGATTAGAACCTTCTCCAAGTACGCCTACACCCAGGACTAAGTCC
TCTGCATTCTCCAGCATATAAATTTATAATGATTAATACCATAGATATACGACTCGCGTGTAGGT
CGAACCACCATGCTACCCTTTTAGGCTGCTGCCTTTTTAGTACTG
Right flanking sequence: Indices 82674 -- 83173
AGCCCTCATTGCGTGGGCCATCGGAAAAACTTGCTGCCAAAAATAGTAACATGGAAAATTTTAAC
CCCGTGGGCCCACGACAGGAAATTTTAAGTAACACGGAGCACGCAACAACACCAGTTGTGTGATT
CTCGCCGGCGGGGCCCCTTTTCTCAATTCTACTCAAACTCGTAACTCCTCTCTTCCTACGTTCTC
TCTTCTCATCGGCCGTTTTGTGTAATGGTTACCGATGAAATTCACGCTTTTCGGCTGCAAAATTG
CATTTTCAACGGTCAACAATGGCAGAAAACAGACGCCGTGTGTGGCTGTTCCAGGTGACGAACCA
CCTCCTTTTGTCATGGGCCCGTGGTGACACGGTGTCCTGGTACCTGATCTACTGACCATTGTTCA
CCTCGTCTCGATTCATCTCTTTGTGCCCTACGTGTTTGGGTTTGTTCGTTGTTCGTCCTACTGTC
CGTGTTCTCCCGTGTGTTCTTCCTGTTCTCTCGTGTGTTCTTCCT
Found at i:82628 original size:34 final size:35
Alignment explanation
Indices: 82585--82673 Score: 130
Period size: 34 Copynumber: 2.6 Consensus size: 35
82575 TTTAGTACTG
* *
82585 TTTTTAGCACTGC-ACCCTTTTTAGCACTGTACCC
1 TTTTAAGCACTGCTACCCTTTTTAGCACTCTACCC
82619 TTTTAAGCAC-GCTACCCTTTTTAGCACTCTACCC
1 TTTTAAGCACTGCTACCCTTTTTAGCACTCTACCC
*
82653 TTCTAAGCACTGCTA-CCTTTT
1 TTTTAAGCACTGCTACCCTTTT
82674 AGCCCTCATT
Statistics
Matches: 50, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
33 2 0.04
34 44 0.88
35 4 0.08
ACGTcount: A:0.19, C:0.33, G:0.10, T:0.38
Consensus pattern (35 bp):
TTTTAAGCACTGCTACCCTTTTTAGCACTCTACCC
Left flanking sequence: Indices 82085 -- 82584
TGATGTGGCTGTGCTGGTTTGTCCCTGTTGGTTTGTTCCCCTTTGCCTGGTCGTCGTACCCCCAC
GTCTCGTGGGCTGGTCCTTGCTTCTCGGGCTTGGCTGTCGGCTTTGGCTTCTGTGGGTTGTACAA
CCCCGCCAACAACTACATCGTTGACTCGTACCAGCACTACGCTGCCCTGGCTTTGGCTGCCAAGA
CGTTTGTGCGGTCCGTGTGGGGTGCTGCCTGCCCTCTTTTCACCATTCAGATGTACAACAAGTTG
GGCTACGAGTGGGCCACTTCTTTGATGGGCTTCATTTCGTTGGCTTGCTGTGCCATTCCCTACTG
CTTCTACATCTGGGGCGCCAAGATTAGAACCTTCTCCAAGTACGCCTACACCCAGGACTAAGTCC
TCTGCATTCTCCAGCATATAAATTTATAATGATTAATACCATAGATATACGACTCGCGTGTAGGT
CGAACCACCATGCTACCCTTTTAGGCTGCTGCCTTTTTAGTACTG
Right flanking sequence: Indices 82674 -- 83173
AGCCCTCATTGCGTGGGCCATCGGAAAAACTTGCTGCCAAAAATAGTAACATGGAAAATTTTAAC
CCCGTGGGCCCACGACAGGAAATTTTAAGTAACACGGAGCACGCAACAACACCAGTTGTGTGATT
CTCGCCGGCGGGGCCCCTTTTCTCAATTCTACTCAAACTCGTAACTCCTCTCTTCCTACGTTCTC
TCTTCTCATCGGCCGTTTTGTGTAATGGTTACCGATGAAATTCACGCTTTTCGGCTGCAAAATTG
CATTTTCAACGGTCAACAATGGCAGAAAACAGACGCCGTGTGTGGCTGTTCCAGGTGACGAACCA
CCTCCTTTTGTCATGGGCCCGTGGTGACACGGTGTCCTGGTACCTGATCTACTGACCATTGTTCA
CCTCGTCTCGATTCATCTCTTTGTGCCCTACGTGTTTGGGTTTGTTCGTTGTTCGTCCTACTGTC
CGTGTTCTCCCGTGTGTTCTTCCTGTTCTCTCGTGTGTTCTTCCT
Found at i:83157 original size:21 final size:21
Alignment explanation
Indices: 83131--83184 Score: 90
Period size: 21 Copynumber: 2.6 Consensus size: 21
83121 CTACTGTCCG
*
83131 TGTTCTCCCGTGTGTTCTTCC
1 TGTTCTCTCGTGTGTTCTTCC
83152 TGTTCTCTCGTGTGTTCTTCC
1 TGTTCTCTCGTGTGTTCTTCC
*
83173 TATTCTCTCGTG
1 TGTTCTCTCGTG
83185 CTTCTCGTCC
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.02, C:0.30, G:0.19, T:0.50
Consensus pattern (21 bp):
TGTTCTCTCGTGTGTTCTTCC
Left flanking sequence: Indices 82631 -- 83130
TACCCTTTTTAGCACTCTACCCTTCTAAGCACTGCTACCTTTTAGCCCTCATTGCGTGGGCCATC
GGAAAAACTTGCTGCCAAAAATAGTAACATGGAAAATTTTAACCCCGTGGGCCCACGACAGGAAA
TTTTAAGTAACACGGAGCACGCAACAACACCAGTTGTGTGATTCTCGCCGGCGGGGCCCCTTTTC
TCAATTCTACTCAAACTCGTAACTCCTCTCTTCCTACGTTCTCTCTTCTCATCGGCCGTTTTGTG
TAATGGTTACCGATGAAATTCACGCTTTTCGGCTGCAAAATTGCATTTTCAACGGTCAACAATGG
CAGAAAACAGACGCCGTGTGTGGCTGTTCCAGGTGACGAACCACCTCCTTTTGTCATGGGCCCGT
GGTGACACGGTGTCCTGGTACCTGATCTACTGACCATTGTTCACCTCGTCTCGATTCATCTCTTT
GTGCCCTACGTGTTTGGGTTTGTTCGTTGTTCGTCCTACTGTCCG
Right flanking sequence: Indices 83185 -- 83684
CTTCTCGTCCCTTGACCTTGCATTCTCGTACCATGCCAGCGTCAGCCGCAACACTGTAGCCCGAA
AGGCTGGCAACCTGCCCCAAACGGGCTCCCTCGTCAAGCCCACCGCGTGTGACACGCCCACCCGC
GCCGTGCACACGCCCGCACCTCGTATGTCGCCGATTGTCCCCCCGTGGCCACCGTTTCCGAGTTT
ATCCGCCCTCTACCCGCTTTGCAACCGTGTCATTTTCCCAATCGGGCCGTGCGCCAGGGCGCCTA
ACGCTTTGTTGTGTCAACAGCCACCAAAATAGTAACAGGGGGTGGATTGACTTAGCAACGGTCGG
GGATACTGCCACAACAAACCCAACGAACGTTCGCAGGCCCCCTCCCCTTTCTGTCCCTGACCCCT
GCGCCATTACCACCCTTTCGCTGCTGCGACGCGGCACCGGAATTTTTGCCCGAACGTGGGTAGGG
CTGTAGCGAATAAAACGCACGGAGGGGTGACCAGTCACGCTTTGG
Found at i:83730 original size:16 final size:16
Alignment explanation
Indices: 83711--83751 Score: 64
Period size: 16 Copynumber: 2.6 Consensus size: 16
83701 CACCCGCATT
*
83711 TCTCTTCCCCCGCTGG
1 TCTCGTCCCCCGCTGG
*
83727 TCTCGTCACCCGCTGG
1 TCTCGTCCCCCGCTGG
83743 TCTCGTCCC
1 TCTCGTCCC
83752 ACGCGGCCCC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.02, C:0.49, G:0.20, T:0.29
Consensus pattern (16 bp):
TCTCGTCCCCCGCTGG
Left flanking sequence: Indices 83211 -- 83710
CGTACCATGCCAGCGTCAGCCGCAACACTGTAGCCCGAAAGGCTGGCAACCTGCCCCAAACGGGC
TCCCTCGTCAAGCCCACCGCGTGTGACACGCCCACCCGCGCCGTGCACACGCCCGCACCTCGTAT
GTCGCCGATTGTCCCCCCGTGGCCACCGTTTCCGAGTTTATCCGCCCTCTACCCGCTTTGCAACC
GTGTCATTTTCCCAATCGGGCCGTGCGCCAGGGCGCCTAACGCTTTGTTGTGTCAACAGCCACCA
AAATAGTAACAGGGGGTGGATTGACTTAGCAACGGTCGGGGATACTGCCACAACAAACCCAACGA
ACGTTCGCAGGCCCCCTCCCCTTTCTGTCCCTGACCCCTGCGCCATTACCACCCTTTCGCTGCTG
CGACGCGGCACCGGAATTTTTGCCCGAACGTGGGTAGGGCTGTAGCGAATAAAACGCACGGAGGG
GTGACCAGTCACGCTTTGGTTCCCCTCACTGCCGTCACCCGCATT
Right flanking sequence: Indices 83752 -- 84251
ACGCGGCCCCTATTTCGTCTCGTCTCGTCAAGCCACCTCCTCGTACTCCTCCACTCCTCTTCTGA
AAAATCGAAACAGCTCGAGAACCGCCACCGCTACAGACCAACCGAAAGCACCCCCGAGCAGAGCA
CGCCAAAACCACCCACCTCCAGCTTCCCCCGCCCGCACCCGCCCCCACAAACCCGCGCCACCCCT
AGCCATTTCATCTCCCCCCGTGTACGTGTCGCCTGCACACAGCCCAGTCGCGCTCGCCCCACCCA
CCGCGTTCAATATAAATACGTGTTGCCTTGCCAGAAAATCTTTTCTCTGACGACAAATTTCAGTA
CAATGAAGGGTTTAATTCTTGTTGGCGGGTACGGTACCCGGTTGAGACCGCTCACGCTTTCGCTC
CCGAAGCCCCTTGTGGAGTTCGCCAACCGGGCCATGATCTTGCACCAGATTGAGGCTCTTGCCAA
GGCCGGTGTCACCGACATTGTGCTTGCGGTCAACTACCGTCCCGA
Found at i:84930 original size:18 final size:18
Alignment explanation
Indices: 84889--84923 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
84879 CACCGCGTTG
*
84889 ATTGGCCCCAACGTCACC
1 ATTGGCCCCAACGTCAAC
84907 ATTGGCCCCAACGTCAA
1 ATTGGCCCCAACGTCAA
84924 GGTTGGCGCC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.26, C:0.40, G:0.17, T:0.17
Consensus pattern (18 bp):
ATTGGCCCCAACGTCAAC
Left flanking sequence: Indices 84389 -- 84888
TCTTTGTGCTCAACTCCGACGTCATCTGCGACTACCCGTTCGAGGAATTGGCCAAGTTCCACCAG
GCCCACGGGGCCATGGGCACCATTGTCGCCACCAAGGTCGACGAGCCCTCCAAGTACGGTGTGAT
TGTCCACGACCGTGACACCCCCAACTTGATCGACCGGTTCGTGGAGAAGCCCGTCGAGTTTGTTG
GCAACCGCATCAACGCCGGTTTGTACATTTTGAACCCCGAGATCATCGACTTGATCCCCATGAAG
CCCACCTCGATCGAGAAGGAGACCTTCCCCATCCTCGTGGAGCGCAAGCAGTTGTACCTGTTTGA
CTTGGAGGGCTACTGGATGGACGTTGGCCAGCCCAAGGACTTCTTGGCTGGTACCGCGCTCTACT
TGAACTCGGTGGCCAAGAACCACCCCGAGAAGTTGGCCAAGGGCGAGTTTGTCCACCCCGAGGGC
AAGGTGTTGATCGACCCCTCTGCCACCATCGACCCCACCGCGTTG
Right flanking sequence: Indices 84924 -- 85423
GGTTGGCGCCGGTGCCCGTGTCGTGGGCTCGGTGTTGCTCGCTGACTCCGAGGTCAAGGACCACG
CGTTGGTCAAGAACACCATTGTCGGCTGGAAGTCGCGCATTGGCAAGTGGGCCAGAACCGAGGGC
TGCACTGTTCTTGGTGAGGATGTCGAGGTGAAGAACGAGATCTACGTGAACGGCGCCAAGGTGTT
GCCCCACAAGTCGATCTCGTCCAACGTGGAGAAGGAGTCGATTATCATGTAGAGACGATCATACC
CGTTTGTATTATAAGCATAAGAAACACCGCCTGTAGGCGAACGAAAAGTGAGGCGACTGAGCCGG
GGAGTACTGACTATGAGTAGTGACTGAGTATTGACTATGGTAGTGACTGATTGTTGACTATGGGT
ATTGACTGGGGAGTATTGTCACCAAGGGTGGTGGTGGCTTCGTCTGTGTGCAGGACACGGTGATC
AGACACAGTGTGTCCCAACGTAGAGGCCACGCTGGAGGTCACGCT
Found at i:85272 original size:13 final size:13
Alignment explanation
Indices: 85250--85296 Score: 55
Period size: 13 Copynumber: 3.8 Consensus size: 13
85240 CTGAGCCGGG
*
85250 GAGTACTGACTAT
1 GAGTAGTGACTAT
85263 GAGTAGTGAC--T
1 GAGTAGTGACTAT
*
85274 GAGTATTGACTAT
1 GAGTAGTGACTAT
85287 G-GTAGTGACT
1 GAGTAGTGACT
85297 GATTGTTGAC
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
11 10 0.34
12 8 0.28
13 11 0.38
ACGTcount: A:0.28, C:0.11, G:0.30, T:0.32
Consensus pattern (13 bp):
GAGTAGTGACTAT
Left flanking sequence: Indices 84750 -- 85249
GGACTTCTTGGCTGGTACCGCGCTCTACTTGAACTCGGTGGCCAAGAACCACCCCGAGAAGTTGG
CCAAGGGCGAGTTTGTCCACCCCGAGGGCAAGGTGTTGATCGACCCCTCTGCCACCATCGACCCC
ACCGCGTTGATTGGCCCCAACGTCACCATTGGCCCCAACGTCAAGGTTGGCGCCGGTGCCCGTGT
CGTGGGCTCGGTGTTGCTCGCTGACTCCGAGGTCAAGGACCACGCGTTGGTCAAGAACACCATTG
TCGGCTGGAAGTCGCGCATTGGCAAGTGGGCCAGAACCGAGGGCTGCACTGTTCTTGGTGAGGAT
GTCGAGGTGAAGAACGAGATCTACGTGAACGGCGCCAAGGTGTTGCCCCACAAGTCGATCTCGTC
CAACGTGGAGAAGGAGTCGATTATCATGTAGAGACGATCATACCCGTTTGTATTATAAGCATAAG
AAACACCGCCTGTAGGCGAACGAAAAGTGAGGCGACTGAGCCGGG
Right flanking sequence: Indices 85297 -- 85796
GATTGTTGACTATGGGTATTGACTGGGGAGTATTGTCACCAAGGGTGGTGGTGGCTTCGTCTGTG
TGCAGGACACGGTGATCAGACACAGTGTGTCCCAACGTAGAGGCCACGCTGGAGGTCACGCTGGC
GGCCAGCGGCTACAAACCACTCAGTAATGTCACGGGGACTAGCTCGCAACCACCCCACACACCCC
ACACGTTTGTTCGCCCCAATTGGCTGCATTGTTCACGTAGACGGAGGTGGCCATTGTCCTGCAAC
CATCCAGAACACGAGGCCGTCAGCCAAGACTCGGGCGACACCAGCACGTGCGGGCAAGGCAACAG
ACACCTCCCACGCATGGTCCGGCTCGCCAATCGCGCAACCACCGGAACCGAGCCCTGACACAACG
GTCCCTCGACAGCAATACGAGACGTTAGCCAGACGTTAGCCAGACTTAAGCAGCCGTAGCAATGT
TAGCCCGCTGGCGATGGCATTAGACCGGGCAAACGTCTACGAAGC
Found at i:85295 original size:23 final size:23
Alignment explanation
Indices: 85250--85321 Score: 90
Period size: 24 Copynumber: 3.0 Consensus size: 23
85240 CTGAGCCGGG
*
85250 GAGTACTGACTATGAGTAGTGACT
1 GAGTATTGACTATG-GTAGTGACT
85274 GAGTATTGACTATGGTAGTGACT
1 GAGTATTGACTATGGTAGTGACT
* * *
85297 GATTGTTGACTATGGGTATTGACT
1 GAGTATTGACTAT-GGTAGTGACT
85321 G
1 G
85322 GGGAGTATTG
Statistics
Matches: 43, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
23 20 0.47
24 23 0.53
ACGTcount: A:0.25, C:0.10, G:0.31, T:0.35
Consensus pattern (23 bp):
GAGTATTGACTATGGTAGTGACT
Left flanking sequence: Indices 84750 -- 85249
GGACTTCTTGGCTGGTACCGCGCTCTACTTGAACTCGGTGGCCAAGAACCACCCCGAGAAGTTGG
CCAAGGGCGAGTTTGTCCACCCCGAGGGCAAGGTGTTGATCGACCCCTCTGCCACCATCGACCCC
ACCGCGTTGATTGGCCCCAACGTCACCATTGGCCCCAACGTCAAGGTTGGCGCCGGTGCCCGTGT
CGTGGGCTCGGTGTTGCTCGCTGACTCCGAGGTCAAGGACCACGCGTTGGTCAAGAACACCATTG
TCGGCTGGAAGTCGCGCATTGGCAAGTGGGCCAGAACCGAGGGCTGCACTGTTCTTGGTGAGGAT
GTCGAGGTGAAGAACGAGATCTACGTGAACGGCGCCAAGGTGTTGCCCCACAAGTCGATCTCGTC
CAACGTGGAGAAGGAGTCGATTATCATGTAGAGACGATCATACCCGTTTGTATTATAAGCATAAG
AAACACCGCCTGTAGGCGAACGAAAAGTGAGGCGACTGAGCCGGG
Right flanking sequence: Indices 85322 -- 85821
GGGAGTATTGTCACCAAGGGTGGTGGTGGCTTCGTCTGTGTGCAGGACACGGTGATCAGACACAG
TGTGTCCCAACGTAGAGGCCACGCTGGAGGTCACGCTGGCGGCCAGCGGCTACAAACCACTCAGT
AATGTCACGGGGACTAGCTCGCAACCACCCCACACACCCCACACGTTTGTTCGCCCCAATTGGCT
GCATTGTTCACGTAGACGGAGGTGGCCATTGTCCTGCAACCATCCAGAACACGAGGCCGTCAGCC
AAGACTCGGGCGACACCAGCACGTGCGGGCAAGGCAACAGACACCTCCCACGCATGGTCCGGCTC
GCCAATCGCGCAACCACCGGAACCGAGCCCTGACACAACGGTCCCTCGACAGCAATACGAGACGT
TAGCCAGACGTTAGCCAGACTTAAGCAGCCGTAGCAATGTTAGCCCGCTGGCGATGGCATTAGAC
CGGGCAAACGTCTACGAAGCTGGCTACTCGTAGAGAAGAAGGTTA
Found at i:85722 original size:11 final size:11
Alignment explanation
Indices: 85706--85731 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
85696 CAGCAATACG
85706 AGACGTTAGCC
1 AGACGTTAGCC
85717 AGACGTTAGCC
1 AGACGTTAGCC
85728 AGAC
1 AGAC
85732 TTAAGCAGCC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.31, C:0.27, G:0.27, T:0.15
Consensus pattern (11 bp):
AGACGTTAGCC
Left flanking sequence: Indices 85206 -- 85705
AACACCGCCTGTAGGCGAACGAAAAGTGAGGCGACTGAGCCGGGGAGTACTGACTATGAGTAGTG
ACTGAGTATTGACTATGGTAGTGACTGATTGTTGACTATGGGTATTGACTGGGGAGTATTGTCAC
CAAGGGTGGTGGTGGCTTCGTCTGTGTGCAGGACACGGTGATCAGACACAGTGTGTCCCAACGTA
GAGGCCACGCTGGAGGTCACGCTGGCGGCCAGCGGCTACAAACCACTCAGTAATGTCACGGGGAC
TAGCTCGCAACCACCCCACACACCCCACACGTTTGTTCGCCCCAATTGGCTGCATTGTTCACGTA
GACGGAGGTGGCCATTGTCCTGCAACCATCCAGAACACGAGGCCGTCAGCCAAGACTCGGGCGAC
ACCAGCACGTGCGGGCAAGGCAACAGACACCTCCCACGCATGGTCCGGCTCGCCAATCGCGCAAC
CACCGGAACCGAGCCCTGACACAACGGTCCCTCGACAGCAATACG
Right flanking sequence: Indices 85732 -- 86231
TTAAGCAGCCGTAGCAATGTTAGCCCGCTGGCGATGGCATTAGACCGGGCAAACGTCTACGAAGC
TGGCTACTCGTAGAGAAGAAGGTTAAGAGAAGGTAAAGAAAAGGTAAAGAAAAGGTAAAGAAAAG
GTAGAGAAAAGGTGATTAGTAGGCTCCACCGAGAGATGGCCAACCACGCCACTAGCTCGGGTAAC
CCCACAGGCACATACCCACCACCACCGTCTATTATTAGCGCAACCACATAGCCCGGTTGCGCTAA
TTCTTCGATGCAGCTATCGGGCGGTGGTACGCATAGATACCGAGCAAGACGGCAGACAGTGCCCG
CAGCAGCCACCGTGTAGACCCTGGCGCCCCACCGACGGTCCCACCGACGGTCCCACCCACCGTAA
CCACCACCCCACGTAGGCAGCCACCACCCTGTTTCACCCATGCCCCACCGTGTCTCTCCACCGTC
TCTCCGCGTTCGCCCGAGCTGACTAACCGGTCCAAACGGTTGCCA
Found at i:85829 original size:11 final size:11
Alignment explanation
Indices: 85810--85874 Score: 94
Period size: 11 Copynumber: 5.8 Consensus size: 11
85800 CTACTCGTAG
*
85810 AGAAGAAGGTTA
1 AGAA-AAGGTAA
*
85822 AGAGAAGGTAA
1 AGAAAAGGTAA
85833 AGAAAAGGTAA
1 AGAAAAGGTAA
85844 AGAAAAGGTAA
1 AGAAAAGGTAA
*
85855 AGAAAAGGTAG
1 AGAAAAGGTAA
85866 AGAAAAGGT
1 AGAAAAGGT
85875 GATTAGTAGG
Statistics
Matches: 49, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
11 46 0.94
12 3 0.06
ACGTcount: A:0.57, C:0.00, G:0.32, T:0.11
Consensus pattern (11 bp):
AGAAAAGGTAA
Left flanking sequence: Indices 85310 -- 85809
GGGTATTGACTGGGGAGTATTGTCACCAAGGGTGGTGGTGGCTTCGTCTGTGTGCAGGACACGGT
GATCAGACACAGTGTGTCCCAACGTAGAGGCCACGCTGGAGGTCACGCTGGCGGCCAGCGGCTAC
AAACCACTCAGTAATGTCACGGGGACTAGCTCGCAACCACCCCACACACCCCACACGTTTGTTCG
CCCCAATTGGCTGCATTGTTCACGTAGACGGAGGTGGCCATTGTCCTGCAACCATCCAGAACACG
AGGCCGTCAGCCAAGACTCGGGCGACACCAGCACGTGCGGGCAAGGCAACAGACACCTCCCACGC
ATGGTCCGGCTCGCCAATCGCGCAACCACCGGAACCGAGCCCTGACACAACGGTCCCTCGACAGC
AATACGAGACGTTAGCCAGACGTTAGCCAGACTTAAGCAGCCGTAGCAATGTTAGCCCGCTGGCG
ATGGCATTAGACCGGGCAAACGTCTACGAAGCTGGCTACTCGTAG
Right flanking sequence: Indices 85875 -- 86374
GATTAGTAGGCTCCACCGAGAGATGGCCAACCACGCCACTAGCTCGGGTAACCCCACAGGCACAT
ACCCACCACCACCGTCTATTATTAGCGCAACCACATAGCCCGGTTGCGCTAATTCTTCGATGCAG
CTATCGGGCGGTGGTACGCATAGATACCGAGCAAGACGGCAGACAGTGCCCGCAGCAGCCACCGT
GTAGACCCTGGCGCCCCACCGACGGTCCCACCGACGGTCCCACCCACCGTAACCACCACCCCACG
TAGGCAGCCACCACCCTGTTTCACCCATGCCCCACCGTGTCTCTCCACCGTCTCTCCGCGTTCGC
CCGAGCTGACTAACCGGTCCAAACGGTTGCCAGATCCACCCGGGCACAGTCTGCGTCGGACACGG
CCAGCGCGGGCACGCCTCGCCTACCACCCCACGGCCACTCCGTAGAGCCTGCTAGCGGTCGCGTG
CGCTCGTTTCTCGCCCGTCTCCCACACCCACCCGGCACGGCTATC
Found at i:86101 original size:12 final size:12
Alignment explanation
Indices: 86084--86113 Score: 60
Period size: 12 Copynumber: 2.5 Consensus size: 12
86074 ACCCTGGCGC
86084 CCCACCGACGGT
1 CCCACCGACGGT
86096 CCCACCGACGGT
1 CCCACCGACGGT
86108 CCCACC
1 CCCACC
86114 CACCGTAACC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.17, C:0.57, G:0.20, T:0.07
Consensus pattern (12 bp):
CCCACCGACGGT
Left flanking sequence: Indices 85584 -- 86083
GACTCGGGCGACACCAGCACGTGCGGGCAAGGCAACAGACACCTCCCACGCATGGTCCGGCTCGC
CAATCGCGCAACCACCGGAACCGAGCCCTGACACAACGGTCCCTCGACAGCAATACGAGACGTTA
GCCAGACGTTAGCCAGACTTAAGCAGCCGTAGCAATGTTAGCCCGCTGGCGATGGCATTAGACCG
GGCAAACGTCTACGAAGCTGGCTACTCGTAGAGAAGAAGGTTAAGAGAAGGTAAAGAAAAGGTAA
AGAAAAGGTAAAGAAAAGGTAGAGAAAAGGTGATTAGTAGGCTCCACCGAGAGATGGCCAACCAC
GCCACTAGCTCGGGTAACCCCACAGGCACATACCCACCACCACCGTCTATTATTAGCGCAACCAC
ATAGCCCGGTTGCGCTAATTCTTCGATGCAGCTATCGGGCGGTGGTACGCATAGATACCGAGCAA
GACGGCAGACAGTGCCCGCAGCAGCCACCGTGTAGACCCTGGCGC
Right flanking sequence: Indices 86114 -- 86613
CACCGTAACCACCACCCCACGTAGGCAGCCACCACCCTGTTTCACCCATGCCCCACCGTGTCTCT
CCACCGTCTCTCCGCGTTCGCCCGAGCTGACTAACCGGTCCAAACGGTTGCCAGATCCACCCGGG
CACAGTCTGCGTCGGACACGGCCAGCGCGGGCACGCCTCGCCTACCACCCCACGGCCACTCCGTA
GAGCCTGCTAGCGGTCGCGTGCGCTCGTTTCTCGCCCGTCTCCCACACCCACCCGGCACGGCTAT
CTCGAGAATCCCCCGGATGGACCTGCCGGCCCGGAAGCGGCAGTTGGCACGATCTGGGGTTGAGG
CTGCCTCGAGCCGCGACAACAGGCCACGAAAGCGGGGAAACACGCTGGGCTACGGTGGTGTGTGC
AGTGTGGGCAGTGGCGTGTCCACACGACAGTAGGCCACGACCGCAACCGAGCCCACAACCGAGCC
CACAGCGCGTGGGGCCCGGGCATTAATCCGGTGTCTGTCGGCTAG
Found at i:86564 original size:12 final size:12
Alignment explanation
Indices: 86547--86572 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
86537 GCCACGACCG
86547 CAACCGAGCCCA
1 CAACCGAGCCCA
86559 CAACCGAGCCCA
1 CAACCGAGCCCA
86571 CA
1 CA
86573 GCGCGTGGGG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.35, C:0.50, G:0.15, T:0.00
Consensus pattern (12 bp):
CAACCGAGCCCA
Left flanking sequence: Indices 86047 -- 86546
ACAGTGCCCGCAGCAGCCACCGTGTAGACCCTGGCGCCCCACCGACGGTCCCACCGACGGTCCCA
CCCACCGTAACCACCACCCCACGTAGGCAGCCACCACCCTGTTTCACCCATGCCCCACCGTGTCT
CTCCACCGTCTCTCCGCGTTCGCCCGAGCTGACTAACCGGTCCAAACGGTTGCCAGATCCACCCG
GGCACAGTCTGCGTCGGACACGGCCAGCGCGGGCACGCCTCGCCTACCACCCCACGGCCACTCCG
TAGAGCCTGCTAGCGGTCGCGTGCGCTCGTTTCTCGCCCGTCTCCCACACCCACCCGGCACGGCT
ATCTCGAGAATCCCCCGGATGGACCTGCCGGCCCGGAAGCGGCAGTTGGCACGATCTGGGGTTGA
GGCTGCCTCGAGCCGCGACAACAGGCCACGAAAGCGGGGAAACACGCTGGGCTACGGTGGTGTGT
GCAGTGTGGGCAGTGGCGTGTCCACACGACAGTAGGCCACGACCG
Right flanking sequence: Indices 86573 -- 87072
GCGCGTGGGGCCCGGGCATTAATCCGGTGTCTGTCGGCTAGTGCTAAGCCCCGCGTCGGAAGCTC
CCCTACGGCCGCCACCAGCGAATTTGCTCGCTCGTCTCGGTTCGCAACGGTGTGCTCGGTTGCTC
GCAGGAATCCGGGGTAGCCGTCGATCACAATGGTGCGGGCTGGAAGCGTCCAGCGGTCGGTCGAG
GGTGGCGCGTGCGTGCGTCGCGATCTACTGCTGCCCCTGATTTCTCTTCCTTCCTTCTTCCTTCT
TCTTTTCCTGCCTTCCTTCCTACTTCTTCCTACTTCCTTCCTACTTCTCCCACGTATCTATTCTC
ACTCTATTTTTACTCATTTTACTCACTATTGTACACTATTGTACACTATTACTTTATTTTACTCA
CTATTTTACTCACTCTATTTTACCATTGACGCAGGCAACAACAGCCCACCGCGCCCGCCACGCCA
CCAACCACGCCCAAAAACCACCCAGCGCCACTCCCCACACCCGTA
Found at i:86828 original size:11 final size:11
Alignment explanation
Indices: 86813--86879 Score: 70
Period size: 11 Copynumber: 6.4 Consensus size: 11
86803 CCTGATTTCT
*
86813 CTTCCTTCCTT
1 CTTCCTTCCTA
*
86824 CTTCCTT-CTT
1 CTTCCTTCCTA
*
86834 CTT--TTCCTGC
1 CTTCCTTCCT-A
86844 CTTCCTTCCTA
1 CTTCCTTCCTA
86855 CTT-CTTCCTA
1 CTTCCTTCCTA
86865 CTTCCTTCCTA
1 CTTCCTTCCTA
86876 CTTC
1 CTTC
86880 TCCCACGTAT
Statistics
Matches: 49, Mismatches: 2, Indels: 10
0.80 0.03 0.16
Matches are distributed among these distances:
8 2 0.04
9 2 0.04
10 19 0.39
11 21 0.43
12 5 0.10
ACGTcount: A:0.04, C:0.43, G:0.01, T:0.51
Consensus pattern (11 bp):
CTTCCTTCCTA
Left flanking sequence: Indices 86313 -- 86812
CTGCTAGCGGTCGCGTGCGCTCGTTTCTCGCCCGTCTCCCACACCCACCCGGCACGGCTATCTCG
AGAATCCCCCGGATGGACCTGCCGGCCCGGAAGCGGCAGTTGGCACGATCTGGGGTTGAGGCTGC
CTCGAGCCGCGACAACAGGCCACGAAAGCGGGGAAACACGCTGGGCTACGGTGGTGTGTGCAGTG
TGGGCAGTGGCGTGTCCACACGACAGTAGGCCACGACCGCAACCGAGCCCACAACCGAGCCCACA
GCGCGTGGGGCCCGGGCATTAATCCGGTGTCTGTCGGCTAGTGCTAAGCCCCGCGTCGGAAGCTC
CCCTACGGCCGCCACCAGCGAATTTGCTCGCTCGTCTCGGTTCGCAACGGTGTGCTCGGTTGCTC
GCAGGAATCCGGGGTAGCCGTCGATCACAATGGTGCGGGCTGGAAGCGTCCAGCGGTCGGTCGAG
GGTGGCGCGTGCGTGCGTCGCGATCTACTGCTGCCCCTGATTTCT
Right flanking sequence: Indices 86880 -- 87379
TCCCACGTATCTATTCTCACTCTATTTTTACTCATTTTACTCACTATTGTACACTATTGTACACT
ATTACTTTATTTTACTCACTATTTTACTCACTCTATTTTACCATTGACGCAGGCAACAACAGCCC
ACCGCGCCCGCCACGCCACCAACCACGCCCAAAAACCACCCAGCGCCACTCCCCACACCCGTAGC
AACCCCGTAAACCCACCACCAGCCCGCCAGCCCGCCCGTAGCCCCAGCTCGTCTTTGCCTCAGCC
CCCTCCCCTCTCCGTGACTGATTCGCACCGAACAATCGCATTTGCTCACCATCGCCCGGGCACTC
GAGCCACCAGCCTGCCCCACCACACCCGTCCCCGCGCTAGCACAGAGCATCTGCCCACTCGCAAC
GGTGCTGCGAACCCGCCACTACCGATCTGTGACTGCCCTCTGCGCCGCAGACCCCGCATACGTAC
AAAACCCGTGGCGACCCTGCGCCTTCCGGAGCCATGAACCACGAC
Found at i:86829 original size:7 final size:7
Alignment explanation
Indices: 86817--86872 Score: 53
Period size: 7 Copynumber: 8.1 Consensus size: 7
86807 ATTTCTCTTC
86817 CTTCCTT
1 CTTCCTT
86824 CTTCCTT
1 CTTCCTT
86831 CTT-CTT
1 CTTCCTT
*
86837 -TTCCTGC
1 CTTCCT-T
86844 CTTCCTT
1 CTTCCTT
* *
86851 CCTACTT
1 CTTCCTT
*
86858 CTTCCTA
1 CTTCCTT
86865 CTTCCTT
1 CTTCCTT
86872 C
1 C
86873 CTACTTCTCC
Statistics
Matches: 38, Mismatches: 8, Indels: 6
0.73 0.15 0.12
Matches are distributed among these distances:
5 2 0.05
6 5 0.13
7 26 0.68
8 5 0.13
ACGTcount: A:0.04, C:0.43, G:0.02, T:0.52
Consensus pattern (7 bp):
CTTCCTT
Left flanking sequence: Indices 86317 -- 86816
TAGCGGTCGCGTGCGCTCGTTTCTCGCCCGTCTCCCACACCCACCCGGCACGGCTATCTCGAGAA
TCCCCCGGATGGACCTGCCGGCCCGGAAGCGGCAGTTGGCACGATCTGGGGTTGAGGCTGCCTCG
AGCCGCGACAACAGGCCACGAAAGCGGGGAAACACGCTGGGCTACGGTGGTGTGTGCAGTGTGGG
CAGTGGCGTGTCCACACGACAGTAGGCCACGACCGCAACCGAGCCCACAACCGAGCCCACAGCGC
GTGGGGCCCGGGCATTAATCCGGTGTCTGTCGGCTAGTGCTAAGCCCCGCGTCGGAAGCTCCCCT
ACGGCCGCCACCAGCGAATTTGCTCGCTCGTCTCGGTTCGCAACGGTGTGCTCGGTTGCTCGCAG
GAATCCGGGGTAGCCGTCGATCACAATGGTGCGGGCTGGAAGCGTCCAGCGGTCGGTCGAGGGTG
GCGCGTGCGTGCGTCGCGATCTACTGCTGCCCCTGATTTCTCTTC
Right flanking sequence: Indices 86873 -- 87372
CTACTTCTCCCACGTATCTATTCTCACTCTATTTTTACTCATTTTACTCACTATTGTACACTATT
GTACACTATTACTTTATTTTACTCACTATTTTACTCACTCTATTTTACCATTGACGCAGGCAACA
ACAGCCCACCGCGCCCGCCACGCCACCAACCACGCCCAAAAACCACCCAGCGCCACTCCCCACAC
CCGTAGCAACCCCGTAAACCCACCACCAGCCCGCCAGCCCGCCCGTAGCCCCAGCTCGTCTTTGC
CTCAGCCCCCTCCCCTCTCCGTGACTGATTCGCACCGAACAATCGCATTTGCTCACCATCGCCCG
GGCACTCGAGCCACCAGCCTGCCCCACCACACCCGTCCCCGCGCTAGCACAGAGCATCTGCCCAC
TCGCAACGGTGCTGCGAACCCGCCACTACCGATCTGTGACTGCCCTCTGCGCCGCAGACCCCGCA
TACGTACAAAACCCGTGGCGACCCTGCGCCTTCCGGAGCCATGAA
Found at i:86934 original size:10 final size:10
Alignment explanation
Indices: 86921--86947 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
86911 TCATTTTACT
86921 CACTATTGTA
1 CACTATTGTA
86931 CACTATTGTA
1 CACTATTGTA
86941 CACTATT
1 CACTATT
86948 ACTTTATTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.30, C:0.22, G:0.07, T:0.41
Consensus pattern (10 bp):
CACTATTGTA
Left flanking sequence: Indices 86421 -- 86920
CACGATCTGGGGTTGAGGCTGCCTCGAGCCGCGACAACAGGCCACGAAAGCGGGGAAACACGCTG
GGCTACGGTGGTGTGTGCAGTGTGGGCAGTGGCGTGTCCACACGACAGTAGGCCACGACCGCAAC
CGAGCCCACAACCGAGCCCACAGCGCGTGGGGCCCGGGCATTAATCCGGTGTCTGTCGGCTAGTG
CTAAGCCCCGCGTCGGAAGCTCCCCTACGGCCGCCACCAGCGAATTTGCTCGCTCGTCTCGGTTC
GCAACGGTGTGCTCGGTTGCTCGCAGGAATCCGGGGTAGCCGTCGATCACAATGGTGCGGGCTGG
AAGCGTCCAGCGGTCGGTCGAGGGTGGCGCGTGCGTGCGTCGCGATCTACTGCTGCCCCTGATTT
CTCTTCCTTCCTTCTTCCTTCTTCTTTTCCTGCCTTCCTTCCTACTTCTTCCTACTTCCTTCCTA
CTTCTCCCACGTATCTATTCTCACTCTATTTTTACTCATTTTACT
Right flanking sequence: Indices 86948 -- 87447
ACTTTATTTTACTCACTATTTTACTCACTCTATTTTACCATTGACGCAGGCAACAACAGCCCACC
GCGCCCGCCACGCCACCAACCACGCCCAAAAACCACCCAGCGCCACTCCCCACACCCGTAGCAAC
CCCGTAAACCCACCACCAGCCCGCCAGCCCGCCCGTAGCCCCAGCTCGTCTTTGCCTCAGCCCCC
TCCCCTCTCCGTGACTGATTCGCACCGAACAATCGCATTTGCTCACCATCGCCCGGGCACTCGAG
CCACCAGCCTGCCCCACCACACCCGTCCCCGCGCTAGCACAGAGCATCTGCCCACTCGCAACGGT
GCTGCGAACCCGCCACTACCGATCTGTGACTGCCCTCTGCGCCGCAGACCCCGCATACGTACAAA
ACCCGTGGCGACCCTGCGCCTTCCGGAGCCATGAACCACGACGAGGACCTCGGGTGGCTTCTAAA
CACCACCGACACCCCCCAGAAACGCGGACGACCGCCGCAGAACTA
Found at i:86985 original size:14 final size:12
Alignment explanation
Indices: 86952--86976 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
86942 ACTATTACTT
86952 TATTTTACTCAC
1 TATTTTACTCAC
86964 TATTTTACTCAC
1 TATTTTACTCAC
86976 T
1 T
86977 CTATTTTACC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.24, G:0.00, T:0.52
Consensus pattern (12 bp):
TATTTTACTCAC
Left flanking sequence: Indices 86452 -- 86951
CGACAACAGGCCACGAAAGCGGGGAAACACGCTGGGCTACGGTGGTGTGTGCAGTGTGGGCAGTG
GCGTGTCCACACGACAGTAGGCCACGACCGCAACCGAGCCCACAACCGAGCCCACAGCGCGTGGG
GCCCGGGCATTAATCCGGTGTCTGTCGGCTAGTGCTAAGCCCCGCGTCGGAAGCTCCCCTACGGC
CGCCACCAGCGAATTTGCTCGCTCGTCTCGGTTCGCAACGGTGTGCTCGGTTGCTCGCAGGAATC
CGGGGTAGCCGTCGATCACAATGGTGCGGGCTGGAAGCGTCCAGCGGTCGGTCGAGGGTGGCGCG
TGCGTGCGTCGCGATCTACTGCTGCCCCTGATTTCTCTTCCTTCCTTCTTCCTTCTTCTTTTCCT
GCCTTCCTTCCTACTTCTTCCTACTTCCTTCCTACTTCTCCCACGTATCTATTCTCACTCTATTT
TTACTCATTTTACTCACTATTGTACACTATTGTACACTATTACTT
Right flanking sequence: Indices 86977 -- 87476
CTATTTTACCATTGACGCAGGCAACAACAGCCCACCGCGCCCGCCACGCCACCAACCACGCCCAA
AAACCACCCAGCGCCACTCCCCACACCCGTAGCAACCCCGTAAACCCACCACCAGCCCGCCAGCC
CGCCCGTAGCCCCAGCTCGTCTTTGCCTCAGCCCCCTCCCCTCTCCGTGACTGATTCGCACCGAA
CAATCGCATTTGCTCACCATCGCCCGGGCACTCGAGCCACCAGCCTGCCCCACCACACCCGTCCC
CGCGCTAGCACAGAGCATCTGCCCACTCGCAACGGTGCTGCGAACCCGCCACTACCGATCTGTGA
CTGCCCTCTGCGCCGCAGACCCCGCATACGTACAAAACCCGTGGCGACCCTGCGCCTTCCGGAGC
CATGAACCACGACGAGGACCTCGGGTGGCTTCTAAACACCACCGACACCCCCCAGAAACGCGGAC
GACCGCCGCAGAACTACGGTTTTCCCGAAAACACCGGCCCCAACG
Found at i:88830 original size:21 final size:21
Alignment explanation
Indices: 88804--88844 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
88794 GCAAGAAGCC
88804 CGTCAAGAAG-GAGGACGACGT
1 CGTCAAG-AGCGAGGACGACGT
*
88825 CGTCAAGCGCGAGGACGACG
1 CGTCAAGAGCGAGGACGACG
88845 ACGAGCTCCG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 1 0.06
21 17 0.94
ACGTcount: A:0.29, C:0.24, G:0.39, T:0.07
Consensus pattern (21 bp):
CGTCAAGAGCGAGGACGACGT
Left flanking sequence: Indices 88304 -- 88803
CTGCTGATCCACCTGACCCAGCCGCTGTTCTTCAGCGCCAACCAGCACTTCTCCCGCAACTCGGT
GGAGGCCGGGCTGGACTTTTTGGCGCGCCCGTCGTTCGACCTGGGCAAACTGGTGCGTTCCGGGC
CCCAGCCGCTGCGGTACAACACGTTTCTGTTCAGCAACATTCTCCCGTTCATGGGCGAGCGCCAG
CGCAGCGACGAGGTGCTTGCGGCGATGAACCTCGACACCCAGACGTCGCCACAGCAGCGACACAT
AATCCGTAGCATATTCAAGACCGGGCTGGAGGAGCAGCCCGAGCAGCCGCTCACGATGGAGGACG
CCAAGATCAAGAAGCCCAAGCGGCTGATTTTCACCCGGTTCAAGCTGAACGGGGTGGTGAAGGAG
GAGGACGACGACGACGACATGATCAAGGAGGAGGAGGAGCTGGCGGTGGACGACGAGGAGCAGCC
CGACTACGCGGCGCTCTTTGAGCACGTGGGCAAGCGCAAGAAGCC
Right flanking sequence: Indices 88845 -- 89344
ACGAGCTCCGCGACTCGGGCTCGTTCCACGACCAGGCGCTGGCGCAACTGCTGGTGGCGTCCAGC
GGGCAGTACTCCGGGGGCACCTCGGAGGGCCCGTTCACCACGGCGCTGAAACGGATTCTCGGGTC
CAAACTCATTCTGGGCCGGAAAAAGACCCAGCCCCAGAGCTCGGCATCGCTGGCGTCGTCGCACG
GGGGCATCTCGGTGGCGCCCACCGCCAACGGCAAGCCCGTGGCCACCGTCATCTCCAAGGGCGTC
GAAGTCGAGGTGGATTTGAGCACGCTCGACTTGCCCCCCAACACCCAGATCTTCCCCACCAGCAT
CATCAACCAAAAGAACCGCACCCGCGGACGCAAGGAGAACAAGGAGGCCGACATGGTGGACCTGC
TGAAGATCTACTTGTGCAACTACTGCCTGCGGCGGTTCAAGCGCCAGGAGCACTTGAAGCGCCAC
TTCCGGTCGCTCCACACGTTTGAGAAGCCCTACGACTGCACCATT
Found at i:89529 original size:15 final size:15
Alignment explanation
Indices: 89509--89578 Score: 104
Period size: 15 Copynumber: 4.6 Consensus size: 15
89499 AGAAAGGAGG
89509 TTAGCAAAGGTGGCT
1 TTAGCAAAGGTGGCT
89524 TTAGCAAAGGTGGCT
1 TTAGCAAAGGTGGCT
89539 TTAGCAAAGGTGGCT
1 TTAGCAAAGGTGGCT
* *
89554 ATATCAAAGGGTGGCT
1 TTAGCAAA-GGTGGCT
*
89570 ATAGCAAAG
1 TTAGCAAAG
89579 AAGGTGGTTG
Statistics
Matches: 51, Mismatches: 3, Indels: 2
0.91 0.05 0.04
Matches are distributed among these distances:
15 37 0.73
16 14 0.27
ACGTcount: A:0.31, C:0.13, G:0.31, T:0.24
Consensus pattern (15 bp):
TTAGCAAAGGTGGCT
Left flanking sequence: Indices 89009 -- 89508
CAGAGCTCGGCATCGCTGGCGTCGTCGCACGGGGGCATCTCGGTGGCGCCCACCGCCAACGGCAA
GCCCGTGGCCACCGTCATCTCCAAGGGCGTCGAAGTCGAGGTGGATTTGAGCACGCTCGACTTGC
CCCCCAACACCCAGATCTTCCCCACCAGCATCATCAACCAAAAGAACCGCACCCGCGGACGCAAG
GAGAACAAGGAGGCCGACATGGTGGACCTGCTGAAGATCTACTTGTGCAACTACTGCCTGCGGCG
GTTCAAGCGCCAGGAGCACTTGAAGCGCCACTTCCGGTCGCTCCACACGTTTGAGAAGCCCTACG
ACTGCACCATTTGCAACAAAAAGTTTTCCCGCCAGGACAATCTCAACCAGCACTTGAAGACCCAC
AAGGAGGAAGAGGAGCGCGCTGCGGTCGAGGCGATGGCAGAGTAGGCATTACTAGGTATATACGG
TTATGGGATACAGTGAGAAGGTAGGATAGTGATGTAGAAAGGAGG
Right flanking sequence: Indices 89579 -- 90078
AAGGTGGTTGTTGTGGGCTCGGAAACGTGTCTCGGTAACTCAAATAGTCTCGTCTTGGTGTTTTT
CTCTTGTGCTACAACCTGCCTATTTGGGACACCATACATGGATTACGGGGTGAGCAACGGAACAC
TCCCATCGCGAGAACATTGTGATTTCTGAGACTTTCAACGATTTAAGCGGGTTGGGCATCTCTGC
TAACTTGACCAAAACGTCAACTGAGTGTGCTTTGCTTCAATTGGAGCCTTCCTCGGACAGATTGT
TGTAGCTTGGAAAGGGAGGGAGAACCAAGCTTTTGGAATAATCTGGGATTGATGGTTATGGCTTG
ACTTGTGTGTTTTTATGCCTATCGGTGCCTGGCTACGCTCCTACATTGAAGTTGCTATTATCCCT
TGTGACAAACACAAAATCGCATATCTACAAACGTATCCCGTTATGATCACTCCCGAACGAACCTC
AACGCCATGCCACAATCTCCTACAACAAATCTATCAGGCCCAATC
Found at i:95874 original size:23 final size:22
Alignment explanation
Indices: 95848--95929 Score: 105
Period size: 20 Copynumber: 3.8 Consensus size: 22
95838 ATAATCTTCC
*
95848 ACCTCGTCTGTGATCTCATCGTG
1 ACCTCGTCTGTGACCTCATC-TG
*
95871 ACCTCGTCTGTGGCCTCATCTG
1 ACCTCGTCTGTGACCTCATCTG
*
95893 ACCTCGTC--TGACCTCGTCTG
1 ACCTCGTCTGTGACCTCATCTG
*
95913 ACCTCGTCTGTGGCCTC
1 ACCTCGTCTGTGACCTC
95930 GTATGTGACC
Statistics
Matches: 52, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
20 18 0.35
22 16 0.31
23 18 0.35
ACGTcount: A:0.10, C:0.37, G:0.22, T:0.32
Consensus pattern (22 bp):
ACCTCGTCTGTGACCTCATCTG
Left flanking sequence: Indices 95348 -- 95847
CAGTCTGTCCGCGGCGGACCGGGCAGACAAAATGCTGGTGCAGCTCAACCAGTTTATCGCCACCC
TTGCCTCGTCCAAAAGCAAGTCGGGCAGCTTCAGCACCCTCGTGCAACCCGCGCAGGCTGTACCT
GCTCCCAGCATGTCGCCGTCGTTTGAGTCGTCGCGGCTTGACCCGCGGGCCCACTCTGAGCTGCA
CCGGTCTGCCTCGAAACCGGAAACAATAGGGAAGGCTGCTAGACGACAAACCGGGGTTGCTTGCA
CGCAGAAAATAGGGTTAAAAAACGGTTTTTTGTCAGGTTTAGCCGGGCGATCGATCGCGGTGATA
GCATGTGGGTGGTGAATGGGCCGGGTGTGGTATTGGTGGGGTTTTCGCGTTTATGAGATTTGTTG
GTGGTATTAGTGGTGTAGTGGTGTGTAAAGGTATTAGTGGTATTTCGTGGTCAAGATTGTTTTCA
TTATTAATAAATTTAGGACTGTAAATAATCTGTAAATAATCTTCC
Right flanking sequence: Indices 95930 -- 96429
GTATGTGACCCCATCTGAGTCGTCCGGCCTCGTCTGTGGTCTTCCCACCCGTCGTGTCATTCTCT
ATCGAACGTTTTATTGTAGTATATAGCGGAGGGTCCTTCTAAGCAGGCAGGCTAGCGTATAGCCC
ACCGGTATGGCTTCGGAACGGGCAGGCTAGCATAACCCACCAGTGTGGCTTGCAAGGCTAGCGGA
AGCCTTTATTAAGGTTGGGCGGAGGCTGCGGGACCCGTCTCGGCGTGGGCTTGAACTGCTTGCGG
AGCAATAGCGCCGCCAGCTCGCCCCGCGGCGCGTCTCTCGGCAGCGTGGGCGGCTTGTCGCCCTT
CAACCGCGACACCACGTCCTGCCCGAGCTTGCACTCGCACTCGTGCTGGTGGCCGCGGTACTGCT
GCAACCACTGCTGCTCCAAGAGCTCGCCGTACGACGGACGCTTGTCCGCGGCCTTGTCAAGGCAC
CCCGCGACAAACTGGCGGGCAACCGGCGAAAACCGCTCGGCCAAA
Found at i:95892 original size:12 final size:12
Alignment explanation
Indices: 95848--95946 Score: 50
Period size: 12 Copynumber: 8.8 Consensus size: 12
95838 ATAATCTTCC
*
95848 ACCTCGTCTGTG
1 ACCTCATCTGTG
*
95860 ATCTCATC-GTG
1 ACCTCATCTGTG
*
95871 ACCTCGTCTGTG
1 ACCTCATCTGTG
*
95883 GCCTCATC--TG
1 ACCTCATCTGTG
*
95893 ACCTCGTC--TG
1 ACCTCATCTGTG
*
95903 ACCTCGTC--TG
1 ACCTCATCTGTG
*
95913 ACCTCGTCTGTG
1 ACCTCATCTGTG
* * *
95925 GCCTCGTATGTG
1 ACCTCATCTGTG
*
95937 ACCCCATCTG
1 ACCTCATCTG
95947 AGTCGTCCGG
Statistics
Matches: 70, Mismatches: 14, Indels: 6
0.78 0.16 0.07
Matches are distributed among these distances:
10 28 0.40
11 9 0.13
12 33 0.47
ACGTcount: A:0.11, C:0.35, G:0.22, T:0.31
Consensus pattern (12 bp):
ACCTCATCTGTG
Left flanking sequence: Indices 95348 -- 95847
CAGTCTGTCCGCGGCGGACCGGGCAGACAAAATGCTGGTGCAGCTCAACCAGTTTATCGCCACCC
TTGCCTCGTCCAAAAGCAAGTCGGGCAGCTTCAGCACCCTCGTGCAACCCGCGCAGGCTGTACCT
GCTCCCAGCATGTCGCCGTCGTTTGAGTCGTCGCGGCTTGACCCGCGGGCCCACTCTGAGCTGCA
CCGGTCTGCCTCGAAACCGGAAACAATAGGGAAGGCTGCTAGACGACAAACCGGGGTTGCTTGCA
CGCAGAAAATAGGGTTAAAAAACGGTTTTTTGTCAGGTTTAGCCGGGCGATCGATCGCGGTGATA
GCATGTGGGTGGTGAATGGGCCGGGTGTGGTATTGGTGGGGTTTTCGCGTTTATGAGATTTGTTG
GTGGTATTAGTGGTGTAGTGGTGTGTAAAGGTATTAGTGGTATTTCGTGGTCAAGATTGTTTTCA
TTATTAATAAATTTAGGACTGTAAATAATCTGTAAATAATCTTCC
Right flanking sequence: Indices 95947 -- 96446
AGTCGTCCGGCCTCGTCTGTGGTCTTCCCACCCGTCGTGTCATTCTCTATCGAACGTTTTATTGT
AGTATATAGCGGAGGGTCCTTCTAAGCAGGCAGGCTAGCGTATAGCCCACCGGTATGGCTTCGGA
ACGGGCAGGCTAGCATAACCCACCAGTGTGGCTTGCAAGGCTAGCGGAAGCCTTTATTAAGGTTG
GGCGGAGGCTGCGGGACCCGTCTCGGCGTGGGCTTGAACTGCTTGCGGAGCAATAGCGCCGCCAG
CTCGCCCCGCGGCGCGTCTCTCGGCAGCGTGGGCGGCTTGTCGCCCTTCAACCGCGACACCACGT
CCTGCCCGAGCTTGCACTCGCACTCGTGCTGGTGGCCGCGGTACTGCTGCAACCACTGCTGCTCC
AAGAGCTCGCCGTACGACGGACGCTTGTCCGCGGCCTTGTCAAGGCACCCCGCGACAAACTGGCG
GGCAACCGGCGAAAACCGCTCGGCCAAAATCGGAGGGTCGCCCTT
Found at i:95902 original size:10 final size:10
Alignment explanation
Indices: 95869--95922 Score: 72
Period size: 10 Copynumber: 5.2 Consensus size: 10
95859 GATCTCATCG
95869 TGACCTCGTC
1 TGACCTCGTC
* *
95879 TGTGGCCTCATC
1 --TGACCTCGTC
95891 TGACCTCGTC
1 TGACCTCGTC
95901 TGACCTCGTC
1 TGACCTCGTC
95911 TGACCTCGTC
1 TGACCTCGTC
95921 TG
1 TG
95923 TGGCCTCGTA
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
10 30 0.79
12 8 0.21
ACGTcount: A:0.09, C:0.37, G:0.22, T:0.31
Consensus pattern (10 bp):
TGACCTCGTC
Left flanking sequence: Indices 95369 -- 95868
GGCAGACAAAATGCTGGTGCAGCTCAACCAGTTTATCGCCACCCTTGCCTCGTCCAAAAGCAAGT
CGGGCAGCTTCAGCACCCTCGTGCAACCCGCGCAGGCTGTACCTGCTCCCAGCATGTCGCCGTCG
TTTGAGTCGTCGCGGCTTGACCCGCGGGCCCACTCTGAGCTGCACCGGTCTGCCTCGAAACCGGA
AACAATAGGGAAGGCTGCTAGACGACAAACCGGGGTTGCTTGCACGCAGAAAATAGGGTTAAAAA
ACGGTTTTTTGTCAGGTTTAGCCGGGCGATCGATCGCGGTGATAGCATGTGGGTGGTGAATGGGC
CGGGTGTGGTATTGGTGGGGTTTTCGCGTTTATGAGATTTGTTGGTGGTATTAGTGGTGTAGTGG
TGTGTAAAGGTATTAGTGGTATTTCGTGGTCAAGATTGTTTTCATTATTAATAAATTTAGGACTG
TAAATAATCTGTAAATAATCTTCCACCTCGTCTGTGATCTCATCG
Right flanking sequence: Indices 95923 -- 96422
TGGCCTCGTATGTGACCCCATCTGAGTCGTCCGGCCTCGTCTGTGGTCTTCCCACCCGTCGTGTC
ATTCTCTATCGAACGTTTTATTGTAGTATATAGCGGAGGGTCCTTCTAAGCAGGCAGGCTAGCGT
ATAGCCCACCGGTATGGCTTCGGAACGGGCAGGCTAGCATAACCCACCAGTGTGGCTTGCAAGGC
TAGCGGAAGCCTTTATTAAGGTTGGGCGGAGGCTGCGGGACCCGTCTCGGCGTGGGCTTGAACTG
CTTGCGGAGCAATAGCGCCGCCAGCTCGCCCCGCGGCGCGTCTCTCGGCAGCGTGGGCGGCTTGT
CGCCCTTCAACCGCGACACCACGTCCTGCCCGAGCTTGCACTCGCACTCGTGCTGGTGGCCGCGG
TACTGCTGCAACCACTGCTGCTCCAAGAGCTCGCCGTACGACGGACGCTTGTCCGCGGCCTTGTC
AAGGCACCCCGCGACAAACTGGCGGGCAACCGGCGAAAACCGCTC
Found at i:98114 original size:12 final size:12
Alignment explanation
Indices: 98097--98129 Score: 57
Period size: 12 Copynumber: 2.8 Consensus size: 12
98087 CGAAAGTGGG
98097 GAGAGAATGCGA
1 GAGAGAATGCGA
98109 GAGAGAATGCGA
1 GAGAGAATGCGA
*
98121 GAGAAAATG
1 GAGAGAATG
98130 AGAGGAAAAC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.45, C:0.06, G:0.39, T:0.09
Consensus pattern (12 bp):
GAGAGAATGCGA
Left flanking sequence: Indices 97597 -- 98096
AACGCGGTCAGGAGAATCTGCAGCAGCGGGCGGGTGCTCTTGGCCAGCAGCAGCCGCAGCAACAG
CCCCGGTGGGAGCTGGGGCTCCTTCAGGGCCCGTTTTTGCTGGAAGGCCATCACCCGGGCCTGGA
GGTCCGACAGGAGCTGCGAGGGCATGGGCACGGGCGGCAGCAGCAGCGCTGGCGCGCGTGGGGTC
TTGTCCGTCATGGCTAGCTCGTGTGCGTGGTGCGTGCGTGCGTGGGGGGCCTGGTGGACGGGAGC
AGTGGTGGTGTCTTGCTGGATGCAAACGAAAAATGAGGCGCGTGAGGCAACGCGAGCGGGTGGGG
GCGGGCTACGCGCGGACGGGCGGGCGAGCGGGCCAGACGGGGGGCTACGGGGGGTCTACGGGGCC
GCGGTGGTGGGGTCCGCTGGTTTTTTTTACGTGTTTGGGCCGTCGGGCTCGGGGATAGCGGTGTC
CTCGGGCTATTGTTGGTGTGTATGGTGGTGAAAAACGAAAGTGGG
Right flanking sequence: Indices 98130 -- 98629
AGAGGAAAACGGGAGGAAAACGGAGGAGGCCACCACCACCACCCGTGGCTACCGGGACGGTGGTG
GGGGCATCGGGGGCTTGCTGCTTGCTCCTGCGGGCCCATGCGGGTGTTCGCGCGCGTCCGCTGAT
CCCCGTGGGGGTTTCCGAGGCGATGGCGGGTCGGTGGTGGCTACCGAGATTTTGTTGGTGGTGGT
GGTGGAGCGGTGGGCCAGGCGGTTGCTGGGCGCAAACTGTGACCAAGACTGTGACCAGACGCACC
GATCTATATTTAGTTAGCGGCTAGGCAGGGGTATGCACGGAACCTGGCACGCCGGGCGGGCCCAG
GGCGTTAGCGAGTGACGTAGAGGCGTAGAGGGGGAGGGATGAGACGTAGAGGGGGAGGGATGAGA
CGTGGAGATGGGGGTTGTGAATGGTGGTGGACGAGAGGAGATACATAACAGCGGGGCTCGAGCGA
ACGGGCCGCGAACGCACTAACCACTCTAGACACGCGTCGAAGCGC
Found at i:98504 original size:21 final size:21
Alignment explanation
Indices: 98478--98522 Score: 90
Period size: 21 Copynumber: 2.1 Consensus size: 21
98468 GACGTAGAGG
98478 CGTAGAGGGGGAGGGATGAGA
1 CGTAGAGGGGGAGGGATGAGA
98499 CGTAGAGGGGGAGGGATGAGA
1 CGTAGAGGGGGAGGGATGAGA
98520 CGT
1 CGT
98523 GGAGATGGGG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.27, C:0.07, G:0.56, T:0.11
Consensus pattern (21 bp):
CGTAGAGGGGGAGGGATGAGA
Left flanking sequence: Indices 97978 -- 98477
TACGGGGCCGCGGTGGTGGGGTCCGCTGGTTTTTTTTACGTGTTTGGGCCGTCGGGCTCGGGGAT
AGCGGTGTCCTCGGGCTATTGTTGGTGTGTATGGTGGTGAAAAACGAAAGTGGGGAGAGAATGCG
AGAGAGAATGCGAGAGAAAATGAGAGGAAAACGGGAGGAAAACGGAGGAGGCCACCACCACCACC
CGTGGCTACCGGGACGGTGGTGGGGGCATCGGGGGCTTGCTGCTTGCTCCTGCGGGCCCATGCGG
GTGTTCGCGCGCGTCCGCTGATCCCCGTGGGGGTTTCCGAGGCGATGGCGGGTCGGTGGTGGCTA
CCGAGATTTTGTTGGTGGTGGTGGTGGAGCGGTGGGCCAGGCGGTTGCTGGGCGCAAACTGTGAC
CAAGACTGTGACCAGACGCACCGATCTATATTTAGTTAGCGGCTAGGCAGGGGTATGCACGGAAC
CTGGCACGCCGGGCGGGCCCAGGGCGTTAGCGAGTGACGTAGAGG
Right flanking sequence: Indices 98523 -- 99022
GGAGATGGGGGTTGTGAATGGTGGTGGACGAGAGGAGATACATAACAGCGGGGCTCGAGCGAACG
GGCCGCGAACGCACTAACCACTCTAGACACGCGTCGAAGCGCCAGGCCGTTGGAATGTGAGCTGA
CGCGACACGTGAGGCATCGCTGGCGGAGGCTACCAGACACGGAAGGTATTGGCGGGGGTCATCGT
CGTTTGCGGGCAGCGGTGGTTGACGACGGTGGCGCGATCGATCTGATAGCCCGGCGTGGGCACAG
TGCATGGTGGCCAGCAACGGCACGCCACCGTCGGGTGGACCTGCCAGGCGGTCACGTGAGCTGAC
TAACGGGGTAGTAATGCGAGCAAGGAGGCAGGGGAGAAGTGGGGTGTGGTTGTGTGGCGGTCATA
GTTGTTTTGGGGATGGAAAGACTGGATGTACACCGTGTGTAGAGAAGGCTCGGGCGTTTTTTAGC
GGGAACTGACGTTTTGGGGCCGTGTGGTGGGTACTACCGCGTCTC
Found at i:99093 original size:22 final size:22
Alignment explanation
Indices: 99068--99111 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
99058 AGCTGGTAGA
99068 CTACAAAATCACTCACTCTAGC
1 CTACAAAATCACTCACTCTAGC
*
99090 CTACAAAATCACTCGCTCTAGC
1 CTACAAAATCACTCACTCTAGC
99112 TGGGGGGGCC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.34, C:0.36, G:0.07, T:0.23
Consensus pattern (22 bp):
CTACAAAATCACTCACTCTAGC
Left flanking sequence: Indices 98568 -- 99067
CAGCGGGGCTCGAGCGAACGGGCCGCGAACGCACTAACCACTCTAGACACGCGTCGAAGCGCCAG
GCCGTTGGAATGTGAGCTGACGCGACACGTGAGGCATCGCTGGCGGAGGCTACCAGACACGGAAG
GTATTGGCGGGGGTCATCGTCGTTTGCGGGCAGCGGTGGTTGACGACGGTGGCGCGATCGATCTG
ATAGCCCGGCGTGGGCACAGTGCATGGTGGCCAGCAACGGCACGCCACCGTCGGGTGGACCTGCC
AGGCGGTCACGTGAGCTGACTAACGGGGTAGTAATGCGAGCAAGGAGGCAGGGGAGAAGTGGGGT
GTGGTTGTGTGGCGGTCATAGTTGTTTTGGGGATGGAAAGACTGGATGTACACCGTGTGTAGAGA
AGGCTCGGGCGTTTTTTAGCGGGAACTGACGTTTTGGGGCCGTGTGGTGGGTACTACCGCGTCTC
GTGTGGTCACGTGCGACGGGTCGGACGACCACTATAGCTGGTAGA
Right flanking sequence: Indices 99112 -- 99611
TGGGGGGGCCGCAAGCGGCGCCCCCCCAGACCCCCCCAACGCTTATTCGTTTGTGAAGTGGGTTG
ATTGTAGGAGGTGTAGTTCATGATGGATCGTTTGAGCGGGTCCAACACGTTGTCCTAGGTGATGA
TCTCGTCGAGAAGCCACTCGTAGGCGCTTCGCTTTTCATTTCGATTGGCTCTTTCCCTTCCTTTT
CTTGTCTATCTCTGTTGATTTGTAAGCTTGAACGAGTGTTCCAAAAAGTAGTCGCCAGATTCTTA
AGCTGAACTATGAATATTGAATGCCATTCCTTTCGCCTCCGCCACGGGTACCGCTGTGCTGAATT
GCTTTCCCCCAGCAGTGGTGTGCTATATCCATTGAGGCTTAGGTTTATTGGGTCTTTTTCTCTCC
CTTTACATCTCTGTCTCTCTCTAGGCAGCAATGGAGGCAGTATGGGGAGAACTTTAAAGTGTGGT
TTTTAGTCGGCCATAGTTGTCTCTCTTCTGACTTTTCTACTAAGC
Found at i:100050 original size:2 final size:2
Alignment explanation
Indices: 100045--100129 Score: 60
Period size: 2 Copynumber: 46.0 Consensus size: 2
100035 TCTCAATCGG
* * *
100045 TC TC TC TC TC -C GTT TC TC TC TC TC TC TC TA TC TC TT TC T- TC
1 TC TC TC TC TC TC -TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
* *
100086 TC TC CC T- TC TC T- TC -C T- TC TC TC CC T- TC TC T- TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
100122 TC TC TC TC
1 TC TC TC TC
100130 CCTTTCCCTT
Statistics
Matches: 64, Mismatches: 10, Indels: 18
0.70 0.11 0.20
Matches are distributed among these distances:
1 8 0.12
2 56 0.88
ACGTcount: A:0.01, C:0.46, G:0.01, T:0.52
Consensus pattern (2 bp):
TC
Left flanking sequence: Indices 99545 -- 100044
GGGGAGAACTTTAAAGTGTGGTTTTTAGTCGGCCATAGTTGTCTCTCTTCTGACTTTTCTACTAA
GCGATATTCCTTTCTGTCAGCTCTTTCCTCTCCATTTCCTTCCCTGTCTACTAAGGTTTTATGGG
TCCTTCTCTCTTTCTCCCTTTACGTCTCTCTCATCCGTCTCTCTCGATCTCTATCCGTCATCTTG
AGACCTAATCTCGGAGTCAGAAGCCAAGGGCCGAAGCCAGTGTTCTTTTCGTTTTAACCATGGTG
GATTTTTTACTCAGATCGGGTACGAAATACGGTTCTGGAATTAGAAGATCTCATTAATCGGGAGG
TTCTATTCTACATGCGTGGCTCTATTCTACATGGTAAAACAATATCCACAATGTAGGTAGCCTGA
TCCGGTCGAATTGCATTCCTGTAACTACCTCATAATAACATCCTTACCCTATTTGGTTAGGTGCG
AAACCAGTAGATGGGAACCAACACGCCTCTCTCTATCTCAATCGG
Right flanking sequence: Indices 100130 -- 100629
CCTTTCCCTTTCTCCCTTTCCCCCTTCTCCCCTTCCCTTTTCTCAGCTTCCACCACCCGACCATC
TTTCATGCGCGTGTTGGTGAGCGACTACGACAGCTACCAGCACGTGCCCACCAAAATCGACTACG
TGTATGGCCGGGCCAAACAGACCCCCGTGATCCGCGTGTACGGCCTGGTCCGCATCCCGCCCGCG
GGCCCCAAGCGGTCCGACCCCGTGGTGGTGCCCGCGATGGTCCACGTCCACAACTACTTCCCCTA
CTTCTACGTAGAGTGCCTAGAGAAGGACGAGGCCAGGTGGACCGACAGCGCGTGGCTCGAGACGC
AGGCGAAAAAACTCGACGAGCAGGTGGCCACGGGCCCCGGAGCCTCCAGCAGCCCGTTGGTGCTC
AGGGTTGCTGTCGTCAAGGGGCTCCCGATCTACGGGTACATCCCCAGCTACCGCCCGGTGTACAA
GGTGACGCTTACCAACCCGCAGCAGAAGACGCGGGTGGCCGGGAT
Found at i:100066 original size:18 final size:17
Alignment explanation
Indices: 100045--100125 Score: 67
Period size: 18 Copynumber: 4.6 Consensus size: 17
100035 TCTCAATCGG
100045 TCTCTCTCTCCGTTTCTC
1 TCTCTCTCTCC-TTTCTC
*
100063 TCTCTCTCT-CTATCTC
1 TCTCTCTCTCCTTTCTC
* *
100079 TTTCTTCTCTCCCTTCTC
1 TCTC-TCTCTCCTTTCTC
*
100097 T-TCCTTCTCTCCCTTCTC
1 TCT-C-TCTCTCCTTTCTC
100115 TTCTCTCTCTC
1 -TCTCTCTCTC
100126 TCTCCCTTTC
Statistics
Matches: 54, Mismatches: 4, Indels: 10
0.79 0.06 0.15
Matches are distributed among these distances:
16 8 0.15
17 7 0.13
18 36 0.67
19 2 0.04
20 1 0.02
ACGTcount: A:0.01, C:0.46, G:0.01, T:0.52
Consensus pattern (17 bp):
TCTCTCTCTCCTTTCTC
Left flanking sequence: Indices 99545 -- 100044
GGGGAGAACTTTAAAGTGTGGTTTTTAGTCGGCCATAGTTGTCTCTCTTCTGACTTTTCTACTAA
GCGATATTCCTTTCTGTCAGCTCTTTCCTCTCCATTTCCTTCCCTGTCTACTAAGGTTTTATGGG
TCCTTCTCTCTTTCTCCCTTTACGTCTCTCTCATCCGTCTCTCTCGATCTCTATCCGTCATCTTG
AGACCTAATCTCGGAGTCAGAAGCCAAGGGCCGAAGCCAGTGTTCTTTTCGTTTTAACCATGGTG
GATTTTTTACTCAGATCGGGTACGAAATACGGTTCTGGAATTAGAAGATCTCATTAATCGGGAGG
TTCTATTCTACATGCGTGGCTCTATTCTACATGGTAAAACAATATCCACAATGTAGGTAGCCTGA
TCCGGTCGAATTGCATTCCTGTAACTACCTCATAATAACATCCTTACCCTATTTGGTTAGGTGCG
AAACCAGTAGATGGGAACCAACACGCCTCTCTCTATCTCAATCGG
Right flanking sequence: Indices 100126 -- 100625
TCTCCCTTTCCCTTTCTCCCTTTCCCCCTTCTCCCCTTCCCTTTTCTCAGCTTCCACCACCCGAC
CATCTTTCATGCGCGTGTTGGTGAGCGACTACGACAGCTACCAGCACGTGCCCACCAAAATCGAC
TACGTGTATGGCCGGGCCAAACAGACCCCCGTGATCCGCGTGTACGGCCTGGTCCGCATCCCGCC
CGCGGGCCCCAAGCGGTCCGACCCCGTGGTGGTGCCCGCGATGGTCCACGTCCACAACTACTTCC
CCTACTTCTACGTAGAGTGCCTAGAGAAGGACGAGGCCAGGTGGACCGACAGCGCGTGGCTCGAG
ACGCAGGCGAAAAAACTCGACGAGCAGGTGGCCACGGGCCCCGGAGCCTCCAGCAGCCCGTTGGT
GCTCAGGGTTGCTGTCGTCAAGGGGCTCCCGATCTACGGGTACATCCCCAGCTACCGCCCGGTGT
ACAAGGTGACGCTTACCAACCCGCAGCAGAAGACGCGGGTGGCCG
Found at i:100094 original size:9 final size:9
Alignment explanation
Indices: 100082--100164 Score: 70
Period size: 9 Copynumber: 9.4 Consensus size: 9
100072 CTATCTCTTT
100082 CTTCTCTCC
1 CTTCTCTCC
*
100091 CTTCTCTTC
1 CTTCTCTCC
100100 CTTCTCTCC
1 CTTCTCTCC
100109 CTTCTCTTCTC
1 CTTCTC-TC-C
100120 TCTCTCTCTCC
1 -CT-TCTCTCC
100131 C-T-T-TCC
1 CTTCTCTCC
100137 CTT-TCTCC
1 CTTCTCTCC
*
100145 CTT-TCCCC
1 CTTCTCTCC
100153 CTTCTC-CC
1 CTTCTCTCC
100161 CTTC
1 CTTC
100165 CCTTTTCTCA
Statistics
Matches: 64, Mismatches: 3, Indels: 15
0.78 0.04 0.18
Matches are distributed among these distances:
6 4 0.06
7 3 0.05
8 20 0.31
9 24 0.38
10 3 0.05
11 2 0.03
12 4 0.06
13 4 0.06
ACGTcount: A:0.00, C:0.53, G:0.00, T:0.47
Consensus pattern (9 bp):
CTTCTCTCC
Left flanking sequence: Indices 99582 -- 100081
GTTGTCTCTCTTCTGACTTTTCTACTAAGCGATATTCCTTTCTGTCAGCTCTTTCCTCTCCATTT
CCTTCCCTGTCTACTAAGGTTTTATGGGTCCTTCTCTCTTTCTCCCTTTACGTCTCTCTCATCCG
TCTCTCTCGATCTCTATCCGTCATCTTGAGACCTAATCTCGGAGTCAGAAGCCAAGGGCCGAAGC
CAGTGTTCTTTTCGTTTTAACCATGGTGGATTTTTTACTCAGATCGGGTACGAAATACGGTTCTG
GAATTAGAAGATCTCATTAATCGGGAGGTTCTATTCTACATGCGTGGCTCTATTCTACATGGTAA
AACAATATCCACAATGTAGGTAGCCTGATCCGGTCGAATTGCATTCCTGTAACTACCTCATAATA
ACATCCTTACCCTATTTGGTTAGGTGCGAAACCAGTAGATGGGAACCAACACGCCTCTCTCTATC
TCAATCGGTCTCTCTCTCCGTTTCTCTCTCTCTCTCTATCTCTTT
Right flanking sequence: Indices 100165 -- 100664
CCTTTTCTCAGCTTCCACCACCCGACCATCTTTCATGCGCGTGTTGGTGAGCGACTACGACAGCT
ACCAGCACGTGCCCACCAAAATCGACTACGTGTATGGCCGGGCCAAACAGACCCCCGTGATCCGC
GTGTACGGCCTGGTCCGCATCCCGCCCGCGGGCCCCAAGCGGTCCGACCCCGTGGTGGTGCCCGC
GATGGTCCACGTCCACAACTACTTCCCCTACTTCTACGTAGAGTGCCTAGAGAAGGACGAGGCCA
GGTGGACCGACAGCGCGTGGCTCGAGACGCAGGCGAAAAAACTCGACGAGCAGGTGGCCACGGGC
CCCGGAGCCTCCAGCAGCCCGTTGGTGCTCAGGGTTGCTGTCGTCAAGGGGCTCCCGATCTACGG
GTACATCCCCAGCTACCGCCCGGTGTACAAGGTGACGCTTACCAACCCGCAGCAGAAGACGCGGG
TGGCCGGGATGTTCCACGCGGGGACGGCCCGGTTGGACGACGGCC
Found at i:100135 original size:53 final size:52
Alignment explanation
Indices: 100049--100173 Score: 130
Period size: 53 Copynumber: 2.4 Consensus size: 52
100039 AATCGGTCTC
* * **
100049 TCTCTCCGTT-TCTCTCTCTCTCTCTATCTCTTT-CTTCTCTCCCTTCTCTTCCT
1 TCTCTCCCTTCTCT-TCTCTCTCTCTATCCCTTTCCTT-TCTCCCTT-TCCCCCT
*
100102 TCTCTCCCTTCTCTTCTCTCTCTCTCTCCCTTTCCCTTTCTCCCTTTCCCCCT
1 TCTCTCCCTTCTCTTCTCTCTCTCTATCCCTTT-CCTTTCTCCCTTTCCCCCT
* *
100155 TCTC-CCCTTCCCTTTTCTC
1 TCTCTCCCTTCTCTTCTCTC
100174 AGCTTCCACC
Statistics
Matches: 62, Mismatches: 7, Indels: 7
0.82 0.09 0.09
Matches are distributed among these distances:
52 13 0.21
53 35 0.56
54 11 0.18
55 3 0.05
ACGTcount: A:0.01, C:0.49, G:0.01, T:0.50
Consensus pattern (52 bp):
TCTCTCCCTTCTCTTCTCTCTCTCTATCCCTTTCCTTTCTCCCTTTCCCCCT
Left flanking sequence: Indices 99549 -- 100048
AGAACTTTAAAGTGTGGTTTTTAGTCGGCCATAGTTGTCTCTCTTCTGACTTTTCTACTAAGCGA
TATTCCTTTCTGTCAGCTCTTTCCTCTCCATTTCCTTCCCTGTCTACTAAGGTTTTATGGGTCCT
TCTCTCTTTCTCCCTTTACGTCTCTCTCATCCGTCTCTCTCGATCTCTATCCGTCATCTTGAGAC
CTAATCTCGGAGTCAGAAGCCAAGGGCCGAAGCCAGTGTTCTTTTCGTTTTAACCATGGTGGATT
TTTTACTCAGATCGGGTACGAAATACGGTTCTGGAATTAGAAGATCTCATTAATCGGGAGGTTCT
ATTCTACATGCGTGGCTCTATTCTACATGGTAAAACAATATCCACAATGTAGGTAGCCTGATCCG
GTCGAATTGCATTCCTGTAACTACCTCATAATAACATCCTTACCCTATTTGGTTAGGTGCGAAAC
CAGTAGATGGGAACCAACACGCCTCTCTCTATCTCAATCGGTCTC
Right flanking sequence: Indices 100174 -- 100673
AGCTTCCACCACCCGACCATCTTTCATGCGCGTGTTGGTGAGCGACTACGACAGCTACCAGCACG
TGCCCACCAAAATCGACTACGTGTATGGCCGGGCCAAACAGACCCCCGTGATCCGCGTGTACGGC
CTGGTCCGCATCCCGCCCGCGGGCCCCAAGCGGTCCGACCCCGTGGTGGTGCCCGCGATGGTCCA
CGTCCACAACTACTTCCCCTACTTCTACGTAGAGTGCCTAGAGAAGGACGAGGCCAGGTGGACCG
ACAGCGCGTGGCTCGAGACGCAGGCGAAAAAACTCGACGAGCAGGTGGCCACGGGCCCCGGAGCC
TCCAGCAGCCCGTTGGTGCTCAGGGTTGCTGTCGTCAAGGGGCTCCCGATCTACGGGTACATCCC
CAGCTACCGCCCGGTGTACAAGGTGACGCTTACCAACCCGCAGCAGAAGACGCGGGTGGCCGGGA
TGTTCCACGCGGGGACGGCCCGGTTGGACGACGGCCGCAAGCCGT
Found at i:100143 original size:22 final size:22
Alignment explanation
Indices: 100088--100143 Score: 62
Period size: 23 Copynumber: 2.5 Consensus size: 22
100078 CTTTCTTCTC
100088 TCCCTTCTCT-TCCTTCTCTCCCT
1 TCCCTTCTCTCT-C-TCTCTCCCT
*
100111 TCTCTTCTCTCTCTCTCTCCCTT
1 TCCCTTCTCTCTCTCTCTCCC-T
100134 TCCCTT-TCTC
1 TCCCTTCTCTC
100144 CCTTTCCCCC
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
22 12 0.41
23 16 0.55
24 1 0.03
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (22 bp):
TCCCTTCTCTCTCTCTCTCCCT
Left flanking sequence: Indices 99588 -- 100087
TCTCTTCTGACTTTTCTACTAAGCGATATTCCTTTCTGTCAGCTCTTTCCTCTCCATTTCCTTCC
CTGTCTACTAAGGTTTTATGGGTCCTTCTCTCTTTCTCCCTTTACGTCTCTCTCATCCGTCTCTC
TCGATCTCTATCCGTCATCTTGAGACCTAATCTCGGAGTCAGAAGCCAAGGGCCGAAGCCAGTGT
TCTTTTCGTTTTAACCATGGTGGATTTTTTACTCAGATCGGGTACGAAATACGGTTCTGGAATTA
GAAGATCTCATTAATCGGGAGGTTCTATTCTACATGCGTGGCTCTATTCTACATGGTAAAACAAT
ATCCACAATGTAGGTAGCCTGATCCGGTCGAATTGCATTCCTGTAACTACCTCATAATAACATCC
TTACCCTATTTGGTTAGGTGCGAAACCAGTAGATGGGAACCAACACGCCTCTCTCTATCTCAATC
GGTCTCTCTCTCCGTTTCTCTCTCTCTCTCTATCTCTTTCTTCTC
Right flanking sequence: Indices 100144 -- 100643
CCTTTCCCCCTTCTCCCCTTCCCTTTTCTCAGCTTCCACCACCCGACCATCTTTCATGCGCGTGT
TGGTGAGCGACTACGACAGCTACCAGCACGTGCCCACCAAAATCGACTACGTGTATGGCCGGGCC
AAACAGACCCCCGTGATCCGCGTGTACGGCCTGGTCCGCATCCCGCCCGCGGGCCCCAAGCGGTC
CGACCCCGTGGTGGTGCCCGCGATGGTCCACGTCCACAACTACTTCCCCTACTTCTACGTAGAGT
GCCTAGAGAAGGACGAGGCCAGGTGGACCGACAGCGCGTGGCTCGAGACGCAGGCGAAAAAACTC
GACGAGCAGGTGGCCACGGGCCCCGGAGCCTCCAGCAGCCCGTTGGTGCTCAGGGTTGCTGTCGT
CAAGGGGCTCCCGATCTACGGGTACATCCCCAGCTACCGCCCGGTGTACAAGGTGACGCTTACCA
ACCCGCAGCAGAAGACGCGGGTGGCCGGGATGTTCCACGCGGGGA
Found at i:100159 original size:15 final size:15
Alignment explanation
Indices: 100126--100166 Score: 57
Period size: 15 Copynumber: 2.8 Consensus size: 15
100116 TCTCTCTCTC
*
100126 TCTCCCTTT-CCCTT
1 TCTCCCTTTCCCCCT
100140 TCTCCCTTTCCCCCT
1 TCTCCCTTTCCCCCT
*
100155 TCTCCCCTTCCC
1 TCTCCCTTTCCC
100167 TTTTCTCAGC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
14 9 0.38
15 15 0.62
ACGTcount: A:0.00, C:0.59, G:0.00, T:0.41
Consensus pattern (15 bp):
TCTCCCTTTCCCCCT
Left flanking sequence: Indices 99626 -- 100125
TCAGCTCTTTCCTCTCCATTTCCTTCCCTGTCTACTAAGGTTTTATGGGTCCTTCTCTCTTTCTC
CCTTTACGTCTCTCTCATCCGTCTCTCTCGATCTCTATCCGTCATCTTGAGACCTAATCTCGGAG
TCAGAAGCCAAGGGCCGAAGCCAGTGTTCTTTTCGTTTTAACCATGGTGGATTTTTTACTCAGAT
CGGGTACGAAATACGGTTCTGGAATTAGAAGATCTCATTAATCGGGAGGTTCTATTCTACATGCG
TGGCTCTATTCTACATGGTAAAACAATATCCACAATGTAGGTAGCCTGATCCGGTCGAATTGCAT
TCCTGTAACTACCTCATAATAACATCCTTACCCTATTTGGTTAGGTGCGAAACCAGTAGATGGGA
ACCAACACGCCTCTCTCTATCTCAATCGGTCTCTCTCTCCGTTTCTCTCTCTCTCTCTATCTCTT
TCTTCTCTCCCTTCTCTTCCTTCTCTCCCTTCTCTTCTCTCTCTC
Right flanking sequence: Indices 100167 -- 100666
TTTTCTCAGCTTCCACCACCCGACCATCTTTCATGCGCGTGTTGGTGAGCGACTACGACAGCTAC
CAGCACGTGCCCACCAAAATCGACTACGTGTATGGCCGGGCCAAACAGACCCCCGTGATCCGCGT
GTACGGCCTGGTCCGCATCCCGCCCGCGGGCCCCAAGCGGTCCGACCCCGTGGTGGTGCCCGCGA
TGGTCCACGTCCACAACTACTTCCCCTACTTCTACGTAGAGTGCCTAGAGAAGGACGAGGCCAGG
TGGACCGACAGCGCGTGGCTCGAGACGCAGGCGAAAAAACTCGACGAGCAGGTGGCCACGGGCCC
CGGAGCCTCCAGCAGCCCGTTGGTGCTCAGGGTTGCTGTCGTCAAGGGGCTCCCGATCTACGGGT
ACATCCCCAGCTACCGCCCGGTGTACAAGGTGACGCTTACCAACCCGCAGCAGAAGACGCGGGTG
GCCGGGATGTTCCACGCGGGGACGGCCCGGTTGGACGACGGCCGC
Found at i:100173 original size:15 final size:14
Alignment explanation
Indices: 100126--100169 Score: 61
Period size: 14 Copynumber: 3.1 Consensus size: 14
100116 TCTCTCTCTC
100126 TCTCCCTTTCCCTT
1 TCTCCCTTTCCCTT
*
100140 TCTCCCTTTCCCCCT
1 TCTCCCTTT-CCCTT
*
100155 TCTCCCCTTCCCTT
1 TCTCCCTTTCCCTT
100169 T
1 T
100170 TCTCAGCTTC
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
14 14 0.54
15 12 0.46
ACGTcount: A:0.00, C:0.55, G:0.00, T:0.45
Consensus pattern (14 bp):
TCTCCCTTTCCCTT
Left flanking sequence: Indices 99626 -- 100125
TCAGCTCTTTCCTCTCCATTTCCTTCCCTGTCTACTAAGGTTTTATGGGTCCTTCTCTCTTTCTC
CCTTTACGTCTCTCTCATCCGTCTCTCTCGATCTCTATCCGTCATCTTGAGACCTAATCTCGGAG
TCAGAAGCCAAGGGCCGAAGCCAGTGTTCTTTTCGTTTTAACCATGGTGGATTTTTTACTCAGAT
CGGGTACGAAATACGGTTCTGGAATTAGAAGATCTCATTAATCGGGAGGTTCTATTCTACATGCG
TGGCTCTATTCTACATGGTAAAACAATATCCACAATGTAGGTAGCCTGATCCGGTCGAATTGCAT
TCCTGTAACTACCTCATAATAACATCCTTACCCTATTTGGTTAGGTGCGAAACCAGTAGATGGGA
ACCAACACGCCTCTCTCTATCTCAATCGGTCTCTCTCTCCGTTTCTCTCTCTCTCTCTATCTCTT
TCTTCTCTCCCTTCTCTTCCTTCTCTCCCTTCTCTTCTCTCTCTC
Right flanking sequence: Indices 100170 -- 100669
TCTCAGCTTCCACCACCCGACCATCTTTCATGCGCGTGTTGGTGAGCGACTACGACAGCTACCAG
CACGTGCCCACCAAAATCGACTACGTGTATGGCCGGGCCAAACAGACCCCCGTGATCCGCGTGTA
CGGCCTGGTCCGCATCCCGCCCGCGGGCCCCAAGCGGTCCGACCCCGTGGTGGTGCCCGCGATGG
TCCACGTCCACAACTACTTCCCCTACTTCTACGTAGAGTGCCTAGAGAAGGACGAGGCCAGGTGG
ACCGACAGCGCGTGGCTCGAGACGCAGGCGAAAAAACTCGACGAGCAGGTGGCCACGGGCCCCGG
AGCCTCCAGCAGCCCGTTGGTGCTCAGGGTTGCTGTCGTCAAGGGGCTCCCGATCTACGGGTACA
TCCCCAGCTACCGCCCGGTGTACAAGGTGACGCTTACCAACCCGCAGCAGAAGACGCGGGTGGCC
GGGATGTTCCACGCGGGGACGGCCCGGTTGGACGACGGCCGCAAG
Found at i:101646 original size:24 final size:24
Alignment explanation
Indices: 101619--101674 Score: 76
Period size: 24 Copynumber: 2.3 Consensus size: 24
101609 CCTGAAGGCG
*
101619 AGCTTGAGAAGCGGCTCGAGAAGA
1 AGCTCGAGAAGCGGCTCGAGAAGA
* * *
101643 AGCTCGAGGAGGGGCTTGAGAAGA
1 AGCTCGAGAAGCGGCTCGAGAAGA
101667 AGCTCGAG
1 AGCTCGAG
101675 GGCGAACCGG
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.30, C:0.16, G:0.41, T:0.12
Consensus pattern (24 bp):
AGCTCGAGAAGCGGCTCGAGAAGA
Left flanking sequence: Indices 101119 -- 101618
GCCGTTCCTGGCACTGGTGGACCACGGGTCCGAGTACTACGGGATGGGCCAGCTGGTGTGGCTGA
ACCAGCCGGAGCTCGACAGCCTCTTGGAGTACGCCATCCGCCAGAACGGCGCCACCAACGTCGAC
ATGAAGGTGTACGAGAAGCGGTTTTGCAGGGACTACCCGGTGCCCACCTGCTTCGAGCTGGTGGA
CCTCGACGCCCACCACCGCTACCACACCTACGCCATGCGCATGGGCTCCGACTTGGTGCAGTGGC
GGCTGGCCCGCGACCTCTTTGCGGTGTCCGAGCCCAGCGACGACGGGCAGGTGAGCACGGTGGAG
GACTCGGTGGTGGAGAACAGCGTCGTGGAGGACGAGGAGCTCGTGCGCAGCGCGCTGAGCGGGTC
CGACTGGTTCAGCGACGACGACTTGGCGTTGTTGCTTGCGGACGACGTGCCGCGGCCCAAGGAGC
CGCTGTTTGAGTTCCCGCGGGAGCCGTCGAAGGAGCCTGAAGGCG
Right flanking sequence: Indices 101675 -- 102174
GGCGAACCGGACCTGGAGACGGTGGTGGAGACCGAGTCGGACCTGGAAACCTTGGACGACGACGT
TGAGGTGGACACCGCCATCGTCACCCAGCGCCCGTTCCAGCTCCGGTCGTCGTTCTTCAGCTCGT
TCTCGTCAGACTCCTCGGAGCCAGGCACCGGCGGCCGCTACAGGGTCCCCATCCCCTCGGTGCTC
TCGGACCCCGTCGAGTTCGACCGCGAGTTCATCGACCAGGGGATGCTCAAGATCGACTGGCCCGT
GCCCACGTACGACAACCCGGGCGACGTGCCCGAGCGGGCGTTTGTGTTCTCCAACCGCCGCCATG
TGGTGCCCGTCAACTCTGAGGCCACGCTCCCGGTGCTCCCGATGTCGCTGTGGCTCGCCAAGACC
ATGCGCCAGAAGCGAGAGCTCCGGCGGTGGCGCTACGTCAAGCCGCCTCCAGACCCAGCAGAGGT
GGCCCAGTGGCTCGAGACCGAGCACCAGTCGCAGAAGTACGCGCT
Found at i:104988 original size:8 final size:8
Alignment explanation
Indices: 104957--105126 Score: 205
Period size: 8 Copynumber: 21.9 Consensus size: 8
104947 TGTTGCTCGG
104957 TAGCTCT-
1 TAGCTCTC
104964 TAGCTC-C
1 TAGCTCTC
104971 TAG--C-C
1 TAGCTCTC
104976 TAGCTCTC
1 TAGCTCTC
104984 TAGCTCTC
1 TAGCTCTC
104992 TAGCTC-C
1 TAGCTCTC
*
104999 ATAGCTTTC
1 -TAGCTCTC
*
105008 TAGCTTTC
1 TAGCTCTC
105016 TAGCTC-C
1 TAGCTCTC
*
105023 ATAGCTTTC
1 -TAGCTCTC
105032 TAGCTCTC
1 TAGCTCTC
105040 TAGCTCTC
1 TAGCTCTC
*
105048 CAGCTCTC
1 TAGCTCTC
105056 TAGCTCTC
1 TAGCTCTC
105064 TAGCTCTC
1 TAGCTCTC
105072 TAGCTCTC
1 TAGCTCTC
105080 TAGCTCTC
1 TAGCTCTC
105088 TAGCTCTC
1 TAGCTCTC
105096 TCA-CTCTC
1 T-AGCTCTC
105104 TAGCTCTC
1 TAGCTCTC
105112 TCA-CTCTC
1 T-AGCTCTC
105120 TAGCTCT
1 TAGCTCT
105127 AGCTCTAGCT
Statistics
Matches: 145, Mismatches: 6, Indels: 23
0.83 0.03 0.13
Matches are distributed among these distances:
5 5 0.03
7 14 0.10
8 122 0.84
9 4 0.03
ACGTcount: A:0.14, C:0.37, G:0.12, T:0.37
Consensus pattern (8 bp):
TAGCTCTC
Left flanking sequence: Indices 104457 -- 104956
TCGGCAAGGTGATGGCCACCCACCGGGCGAAACAGCGCAAGTTTCTTGATTTCATGGGTACTTGC
AACACGTGTGTGCTGAACAACGTGGAGGGGGCCCGGATCGACCAGGCGCTGGAGTGCTGTAACCA
GCTGTGCCAGGTGTATTTCGAGCGGATCAAGACTGGGCACGAGCTCGAGGAGATGGAGAAGTTGC
ACCCTGCGTTGGTGAAGGAACTAGAGTGGTAGAAGTAATGAGGGGATGTTATAAACTGAATAAAA
GACGTAAGTCGTAGCGAATGTTTTGGTGTTTTGGTGTCTTGTTGCATTGGTGCCTTATTCTATCC
ACTTACGCATTGGTAAGGGTAGGTTGCAATCTCCGGGTATAAAATACTTGACATATTTTCTAGCT
GTCATAATGGCTGCAAAAAATTAAGGTCGAGTAGTAGAGTACTAAATTTAAAATAGTCGAGGCAT
TGCCATATCCAGAGTCACATGTAGCTTTGTAGCTCTGTTGCTCGG
Right flanking sequence: Indices 105127 -- 105626
AGCTCTAGCTCAAGCTCTTTAGCTTGCAATAAAGATAATGGACATGTCCTATGTTTCTCAACGTT
ATGTATTGTGAGTATGTAGGTTGCAAAGTCGTAAATAGACGCGTGGTAAACAGCGGGCATTAGCC
ATAACAACTCAATCCCAATTCTCCCGCTATCCTTCCACACCCACTAATGCTGCTTTCTCGGCTGG
TCCGGGTCCTGGCCCGTGCCGTCGGTCTTCCAGCTGCCCTGGAACATGTGTTTGACGTACGCCAA
CGCATCGTGCGAGGACCCAGCGCCCATCTGGCCCACATCGGGACTGAACGAGGTGATCGGCAACA
CCATCACGTCGTCAATCACCACCGGCTGGCGGATCCCGGTGAAAAACCGCCAGGTAATCACCTCG
TCGCGCTTGGAGGTGCCAAAGTTCTCCGCCGGCTGCATGATGTTGTTGAGGTAGAGGAATACGTA
GTCCAGCCAGATCCCGGGCCCCGTCCAGTCCATGATGTCGCCCAG
Found at i:106777 original size:12 final size:12
Alignment explanation
Indices: 106746--106779 Score: 50
Period size: 13 Copynumber: 2.8 Consensus size: 12
106736 TTTTTCACTG
*
106746 TCTGTGACGTTG
1 TCTGTGACGTTC
106758 TACTGTGACGTTC
1 T-CTGTGACGTTC
106771 TCTGTGACG
1 TCTGTGACG
106780 AACGCGTCTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
12 9 0.45
13 11 0.55
ACGTcount: A:0.12, C:0.21, G:0.29, T:0.38
Consensus pattern (12 bp):
TCTGTGACGTTC
Left flanking sequence: Indices 106246 -- 106745
CGGTTGATTTTGTTGGGCTGGAAGTTGAACCCAAGCTCTTTCCAGTTGCCGGCGAGCTCCTGTTC
GCGGGCCAACTGGAGTTTCGCCAGCGACGCCGCGGTTCTGTGGCCTCCGCGGGGAATGTGGAGCA
GCAGGAGCACGAGGTACCCCGCGTAGAGCGCGGCTACGAGCAAAAGGAGGTTTTTCGTCCTCCGG
GGGATCATGGGCTCGTCGAGGTGGTGGTAGCGGTGGCTGGAGAAATAGCGCGTGGGTCACGTGAG
GGTGGGGAAGAAGGATGGAGGAAGGGTGGGAAAAGGGTGGGAAGGTGGTTTGGGAGTGATTGGGT
GGCTGGAGGTTTTGGGTTGATAGGGTGGTTTAGGGGTGGTTTTGTTTTGTTAGTGGGTTTGGTCG
GGTTTTAAGGTTTCTATGTTTGGTGGTTACTGTTCCTGGTATCTGATGGTCGTGACTAGGTCTGA
TGCGTAGATCACAGTGGGGCAAAGGGCTCCGGTATTTTTTCACTG
Right flanking sequence: Indices 106780 -- 107279
AACGCGTCTTGTCCATCCCGCTCTCTTAGCATTCTCCTAACCATAATTACAACTGAGTGCCTGAT
TGGCATCGCTAGCATACGAACCGATGTGGGGAAATCAGGGCCACCGTGCGTTTTGTGACCATATT
CCCGAGCGCTCGCTCTTCTGTTGCCGATTACGGCCTGTTTCATCGATCGATGGGGTGATCCAGGT
GAAATTCAGGTCTTGGCTACAGGAGGGGGAAGGAAGGGTGCACCAGAAGCTCGGAACTGGACATT
CCCGAGTCCATCAAGGAACACAACGGGACTGGTATCAATTCGTGGGGTCATGCGTCTCAATTAAG
TGGTTTGAGTGGGTTTGACCCATTGATGGTCACTACCACCACGACCACCACCACGGCCACCACCA
CCACCACCACCACTGGGCTCCTACTATGCACCCACTACGCCCTCCTCCGCTCCCCCATCACCCCA
CTATTGTAGCAACCACTCGACGCGGCACTTATTCCCGAGAATTTC
Found at i:107154 original size:3 final size:3
Alignment explanation
Indices: 107139--107182 Score: 61
Period size: 3 Copynumber: 14.7 Consensus size: 3
107129 GATGGTCACT
* * *
107139 ACC ACC ACG ACC ACC ACC ACG GCC ACC ACC ACC ACC ACC ACC AC
1 ACC ACC ACC ACC ACC ACC ACC ACC ACC ACC ACC ACC ACC ACC AC
107183 TGGGCTCCTA
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.32, C:0.61, G:0.07, T:0.00
Consensus pattern (3 bp):
ACC
Left flanking sequence: Indices 106639 -- 107138
TTTAAGGTTTCTATGTTTGGTGGTTACTGTTCCTGGTATCTGATGGTCGTGACTAGGTCTGATGC
GTAGATCACAGTGGGGCAAAGGGCTCCGGTATTTTTTCACTGTCTGTGACGTTGTACTGTGACGT
TCTCTGTGACGAACGCGTCTTGTCCATCCCGCTCTCTTAGCATTCTCCTAACCATAATTACAACT
GAGTGCCTGATTGGCATCGCTAGCATACGAACCGATGTGGGGAAATCAGGGCCACCGTGCGTTTT
GTGACCATATTCCCGAGCGCTCGCTCTTCTGTTGCCGATTACGGCCTGTTTCATCGATCGATGGG
GTGATCCAGGTGAAATTCAGGTCTTGGCTACAGGAGGGGGAAGGAAGGGTGCACCAGAAGCTCGG
AACTGGACATTCCCGAGTCCATCAAGGAACACAACGGGACTGGTATCAATTCGTGGGGTCATGCG
TCTCAATTAAGTGGTTTGAGTGGGTTTGACCCATTGATGGTCACT
Right flanking sequence: Indices 107183 -- 107682
TGGGCTCCTACTATGCACCCACTACGCCCTCCTCCGCTCCCCCATCACCCCACTATTGTAGCAAC
CACTCGACGCGGCACTTATTCCCGAGAATTTCACTATATGAATCGGGGGGTCCCCTTGCGGACGC
CATGTTTCTCCGACTACTTTTCCGCTGTGTGTTCTGGTTCGTGTTTACCGCGTGCCTCTGGTTTG
TGTTCTGGTTGTTGTTCTATCTAGTGCTAGTTAATCGATATTGACATTGAACCCGTTGATGTAGT
ACTTGAGCTCGACGTCGTTGTTGTCCTCCAAGTGCGAGTGGAGCACACAGTCGCGGTCGGCAAAC
ACGAAGTAGTTGGAGCGGCACGTGCCCACGAGCTTGGCGGTGCCGAGCCAGTCGGCCACCTTGAC
GCTGGCTCGTGCCCGGTCTACGCGTGGTGGGGGGTTGTTGCCTATTTCCGCCGTCTGGATCTGCT
TGATCTTCTCGTTGTAGGTGATGGTGACCCGGAACTTGCCCTCGC
Found at i:107156 original size:12 final size:12
Alignment explanation
Indices: 107139--107182 Score: 70
Period size: 12 Copynumber: 3.7 Consensus size: 12
107129 GATGGTCACT
107139 ACCACCACGACC
1 ACCACCACGACC
*
107151 ACCACCACGGCC
1 ACCACCACGACC
*
107163 ACCACCACCACC
1 ACCACCACGACC
107175 ACCACCAC
1 ACCACCAC
107183 TGGGCTCCTA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 29 1.00
ACGTcount: A:0.32, C:0.61, G:0.07, T:0.00
Consensus pattern (12 bp):
ACCACCACGACC
Left flanking sequence: Indices 106639 -- 107138
TTTAAGGTTTCTATGTTTGGTGGTTACTGTTCCTGGTATCTGATGGTCGTGACTAGGTCTGATGC
GTAGATCACAGTGGGGCAAAGGGCTCCGGTATTTTTTCACTGTCTGTGACGTTGTACTGTGACGT
TCTCTGTGACGAACGCGTCTTGTCCATCCCGCTCTCTTAGCATTCTCCTAACCATAATTACAACT
GAGTGCCTGATTGGCATCGCTAGCATACGAACCGATGTGGGGAAATCAGGGCCACCGTGCGTTTT
GTGACCATATTCCCGAGCGCTCGCTCTTCTGTTGCCGATTACGGCCTGTTTCATCGATCGATGGG
GTGATCCAGGTGAAATTCAGGTCTTGGCTACAGGAGGGGGAAGGAAGGGTGCACCAGAAGCTCGG
AACTGGACATTCCCGAGTCCATCAAGGAACACAACGGGACTGGTATCAATTCGTGGGGTCATGCG
TCTCAATTAAGTGGTTTGAGTGGGTTTGACCCATTGATGGTCACT
Right flanking sequence: Indices 107183 -- 107682
TGGGCTCCTACTATGCACCCACTACGCCCTCCTCCGCTCCCCCATCACCCCACTATTGTAGCAAC
CACTCGACGCGGCACTTATTCCCGAGAATTTCACTATATGAATCGGGGGGTCCCCTTGCGGACGC
CATGTTTCTCCGACTACTTTTCCGCTGTGTGTTCTGGTTCGTGTTTACCGCGTGCCTCTGGTTTG
TGTTCTGGTTGTTGTTCTATCTAGTGCTAGTTAATCGATATTGACATTGAACCCGTTGATGTAGT
ACTTGAGCTCGACGTCGTTGTTGTCCTCCAAGTGCGAGTGGAGCACACAGTCGCGGTCGGCAAAC
ACGAAGTAGTTGGAGCGGCACGTGCCCACGAGCTTGGCGGTGCCGAGCCAGTCGGCCACCTTGAC
GCTGGCTCGTGCCCGGTCTACGCGTGGTGGGGGGTTGTTGCCTATTTCCGCCGTCTGGATCTGCT
TGATCTTCTCGTTGTAGGTGATGGTGACCCGGAACTTGCCCTCGC
Found at i:110523 original size:3 final size:3
Alignment explanation
Indices: 110515--110634 Score: 93
Period size: 3 Copynumber: 40.0 Consensus size: 3
110505 GCGGCTATCC
*
110515 CGA CGA CGA CGA CGA CAA CGA CGA -GAA CGA CGA -GAA CGA CGA -GAA
1 CGA CGA CGA CGA CGA CGA CGA CGA CG-A CGA CGA CG-A CGA CGA CG-A
* * * * * * * *
110560 CGG GGA CAA CGA CGA CGA TGA CGA CGA CGA TGA CGA TGA TGA CGA TGA
1 CGA CGA CGA CGA CGA CGA CGA CGA CGA CGA CGA CGA CGA CGA CGA CGA
* *
110608 CGA CGA CGA CGA TGA TGA CGA CGA CGA
1 CGA CGA CGA CGA CGA CGA CGA CGA CGA
110635 GGAGGGCGAC
Statistics
Matches: 93, Mismatches: 18, Indels: 12
0.76 0.15 0.10
Matches are distributed among these distances:
2 3 0.03
3 87 0.94
4 3 0.03
ACGTcount: A:0.37, C:0.24, G:0.33, T:0.06
Consensus pattern (3 bp):
CGA
Left flanking sequence: Indices 110015 -- 110514
TACGGCCAGCGCATCCGCATCCAGCTCATTTTGACGGAACTGCTGGTTCACTTCATCAGCCAGGA
GACGTTGGCGGCGTTGGAGGCCAAGGGGATCAAAGTGTGGCGAGATGACGACGAGTGGGCCACCT
GGAAGGGCAGACTGGACCCCGTGTTGCACATCGAGCTCCGCCGGTGGGCCGACATCCTCGTGGTG
TGCCCGTTGACCGCCAACACCCTCTCCAAGATCGGGATGGGCATCTGTGACAACTTGTTGACCAA
CGTGATCCGCGCGTGGAACACGCTGTTCCCAATCTTGTTGGCGCCCGCGATGGTGAGCTACTCGT
ACAACGCCATCACCACCAAGAAGCAGTTGCAGCTCATCAAGGAGGAGATGCCGTGGATCGAGGTG
CTCCGGCCGGTGGAAAAGGTCATAGGGGCGTACGGCGACATCGGGATGGGGGGCATGATGGACTG
GAACGAGATTGTGGACCGGATTGTGATGAAGTTGGGCGGCTATCC
Right flanking sequence: Indices 110635 -- 111134
GGAGGGCGACGCCTACGACCAGTTGAAGAAGGACGTCCTGAAGGCGAACAAGAGCTCCGAGTCGT
AGCCGAGCGAGGAAAGTTAGCCAGTCATAGCCAGTCACAGCATGAGAGCGCCAGGAGCCGATCAG
GCCAGCCGCGCAGTCTCGGTGGACCCACGGCGCACCATTATAGCACGACTATAGTTTAAGGTCTT
TGTCAGAGCTGATGTAGGAGGTGGGTGAGTGGGTGGAGTGGAGTGGAGTGGGAGTGGAATGGGCA
GTGGACAACAGTGGACAAAATTGGAGAGGAGTGGACAAAAGTGAACAGAGCTGTAGAAAACAGCG
AAGAATGGACACTGACACTGAGTACTGGCCACTGAACACTTGATAGCCACTGAACGTTTGATACC
CACTGGACATTTCATAGCCACTAAACACTGAACATCCACTGTACCTCGCTATATCTTGTGGAATG
GTCTTGATCTAAGGGGGAAGCTTATTGCAGAGCTGGTACGATTTG
Found at i:110644 original size:15 final size:15
Alignment explanation
Indices: 110563--110645 Score: 58
Period size: 15 Copynumber: 5.5 Consensus size: 15
110553 ACGAGAACGG
* *
110563 GGACAACGACGACGA
1 GGACGACGACGAGGA
* *
110578 TGACGACGACGATGA
1 GGACGACGACGAGGA
* * * *
110593 CGATGATGACGATGA
1 GGACGACGACGAGGA
* *
110608 CGACGACGACGATGA
1 GGACGACGACGAGGA
*
110623 TGACGACGACGAGGA
1 GGACGACGACGAGGA
*
110638 GGGCGACG
1 GGACGACG
110646 CCTACGACCA
Statistics
Matches: 56, Mismatches: 12, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
15 56 1.00
ACGTcount: A:0.33, C:0.22, G:0.37, T:0.08
Consensus pattern (15 bp):
GGACGACGACGAGGA
Left flanking sequence: Indices 110063 -- 110562
CACTTCATCAGCCAGGAGACGTTGGCGGCGTTGGAGGCCAAGGGGATCAAAGTGTGGCGAGATGA
CGACGAGTGGGCCACCTGGAAGGGCAGACTGGACCCCGTGTTGCACATCGAGCTCCGCCGGTGGG
CCGACATCCTCGTGGTGTGCCCGTTGACCGCCAACACCCTCTCCAAGATCGGGATGGGCATCTGT
GACAACTTGTTGACCAACGTGATCCGCGCGTGGAACACGCTGTTCCCAATCTTGTTGGCGCCCGC
GATGGTGAGCTACTCGTACAACGCCATCACCACCAAGAAGCAGTTGCAGCTCATCAAGGAGGAGA
TGCCGTGGATCGAGGTGCTCCGGCCGGTGGAAAAGGTCATAGGGGCGTACGGCGACATCGGGATG
GGGGGCATGATGGACTGGAACGAGATTGTGGACCGGATTGTGATGAAGTTGGGCGGCTATCCCGA
CGACGACGACGACAACGACGAGAACGACGAGAACGACGAGAACGG
Right flanking sequence: Indices 110646 -- 111145
CCTACGACCAGTTGAAGAAGGACGTCCTGAAGGCGAACAAGAGCTCCGAGTCGTAGCCGAGCGAG
GAAAGTTAGCCAGTCATAGCCAGTCACAGCATGAGAGCGCCAGGAGCCGATCAGGCCAGCCGCGC
AGTCTCGGTGGACCCACGGCGCACCATTATAGCACGACTATAGTTTAAGGTCTTTGTCAGAGCTG
ATGTAGGAGGTGGGTGAGTGGGTGGAGTGGAGTGGAGTGGGAGTGGAATGGGCAGTGGACAACAG
TGGACAAAATTGGAGAGGAGTGGACAAAAGTGAACAGAGCTGTAGAAAACAGCGAAGAATGGACA
CTGACACTGAGTACTGGCCACTGAACACTTGATAGCCACTGAACGTTTGATACCCACTGGACATT
TCATAGCCACTAAACACTGAACATCCACTGTACCTCGCTATATCTTGTGGAATGGTCTTGATCTA
AGGGGGAAGCTTATTGCAGAGCTGGTACGATTTGCCCGTGTTGAG
Found at i:110885 original size:11 final size:11
Alignment explanation
Indices: 110862--110899 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
110852 GGGTGAGTGG
110862 GTGGAGT-GGA
1 GTGGAGTGGGA
110872 GTGGAGTGGGA
1 GTGGAGTGGGA
*
110883 GTGGAATGGGCA
1 GTGGAGTGGG-A
110895 GTGGA
1 GTGGA
110900 CAACAGTGGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
10 7 0.28
11 12 0.48
12 6 0.24
ACGTcount: A:0.21, C:0.03, G:0.58, T:0.18
Consensus pattern (11 bp):
GTGGAGTGGGA
Left flanking sequence: Indices 110362 -- 110861
GCAGTTGCAGCTCATCAAGGAGGAGATGCCGTGGATCGAGGTGCTCCGGCCGGTGGAAAAGGTCA
TAGGGGCGTACGGCGACATCGGGATGGGGGGCATGATGGACTGGAACGAGATTGTGGACCGGATT
GTGATGAAGTTGGGCGGCTATCCCGACGACGACGACGACAACGACGAGAACGACGAGAACGACGA
GAACGGGGACAACGACGACGATGACGACGACGATGACGATGATGACGATGACGACGACGACGATG
ATGACGACGACGAGGAGGGCGACGCCTACGACCAGTTGAAGAAGGACGTCCTGAAGGCGAACAAG
AGCTCCGAGTCGTAGCCGAGCGAGGAAAGTTAGCCAGTCATAGCCAGTCACAGCATGAGAGCGCC
AGGAGCCGATCAGGCCAGCCGCGCAGTCTCGGTGGACCCACGGCGCACCATTATAGCACGACTAT
AGTTTAAGGTCTTTGTCAGAGCTGATGTAGGAGGTGGGTGAGTGG
Right flanking sequence: Indices 110900 -- 111399
CAACAGTGGACAAAATTGGAGAGGAGTGGACAAAAGTGAACAGAGCTGTAGAAAACAGCGAAGAA
TGGACACTGACACTGAGTACTGGCCACTGAACACTTGATAGCCACTGAACGTTTGATACCCACTG
GACATTTCATAGCCACTAAACACTGAACATCCACTGTACCTCGCTATATCTTGTGGAATGGTCTT
GATCTAAGGGGGAAGCTTATTGCAGAGCTGGTACGATTTGCCCGTGTTGAGTGATGACCAGAACC
ACTTCCGCAATTGCACCATCCTTACATAGTCAGATAATAGTAATAATCCAAGTTTTCACGCTTCG
TCCGGTGCTACCCTGTGCTCCGCACCACACTCCCTTAATCCGTGTGCACCGGTGTGCCACCGTGT
GCTAGTGTGCCACCGCGTCCGAGTCAAATCTATACCACGTTAAAACAATACAGACAAACACCCTA
CAAAAACACCCTAAAACACCCTACAACACCCTAAAACCCTACAAA
Found at i:111010 original size:18 final size:18
Alignment explanation
Indices: 110987--111053 Score: 71
Period size: 18 Copynumber: 3.7 Consensus size: 18
110977 CTGAGTACTG
110987 GCCACTGAACACTTGATA
1 GCCACTGAACACTTGATA
**
111005 GCCACTGAACGTTTGATA
1 GCCACTGAACACTTGATA
* * * *
111023 CCCACTGGACATTTCATA
1 GCCACTGAACACTTGATA
*
111041 GCCACTAAACACT
1 GCCACTGAACACT
111054 GAACATCCAC
Statistics
Matches: 39, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
18 39 1.00
ACGTcount: A:0.31, C:0.30, G:0.15, T:0.24
Consensus pattern (18 bp):
GCCACTGAACACTTGATA
Left flanking sequence: Indices 110487 -- 110986
GGATTGTGATGAAGTTGGGCGGCTATCCCGACGACGACGACGACAACGACGAGAACGACGAGAAC
GACGAGAACGGGGACAACGACGACGATGACGACGACGATGACGATGATGACGATGACGACGACGA
CGATGATGACGACGACGAGGAGGGCGACGCCTACGACCAGTTGAAGAAGGACGTCCTGAAGGCGA
ACAAGAGCTCCGAGTCGTAGCCGAGCGAGGAAAGTTAGCCAGTCATAGCCAGTCACAGCATGAGA
GCGCCAGGAGCCGATCAGGCCAGCCGCGCAGTCTCGGTGGACCCACGGCGCACCATTATAGCACG
ACTATAGTTTAAGGTCTTTGTCAGAGCTGATGTAGGAGGTGGGTGAGTGGGTGGAGTGGAGTGGA
GTGGGAGTGGAATGGGCAGTGGACAACAGTGGACAAAATTGGAGAGGAGTGGACAAAAGTGAACA
GAGCTGTAGAAAACAGCGAAGAATGGACACTGACACTGAGTACTG
Right flanking sequence: Indices 111054 -- 111553
GAACATCCACTGTACCTCGCTATATCTTGTGGAATGGTCTTGATCTAAGGGGGAAGCTTATTGCA
GAGCTGGTACGATTTGCCCGTGTTGAGTGATGACCAGAACCACTTCCGCAATTGCACCATCCTTA
CATAGTCAGATAATAGTAATAATCCAAGTTTTCACGCTTCGTCCGGTGCTACCCTGTGCTCCGCA
CCACACTCCCTTAATCCGTGTGCACCGGTGTGCCACCGTGTGCTAGTGTGCCACCGCGTCCGAGT
CAAATCTATACCACGTTAAAACAATACAGACAAACACCCTACAAAAACACCCTAAAACACCCTAC
AACACCCTAAAACCCTACAAATTCGTTCTCTATGGTCGCTGACCGTGTGTATTACCTAGTCCAAG
TCGGTGATCTCGACGATCTGGGGCCCCCCAGCGGGCTCCAGCACCTCCTCCACCCGCTCCACCGT
CACAGGCGACTGGGGCTTCTCCACCTTGGGCTCCGCCGGCTTTTC
Found at i:111361 original size:13 final size:13
Alignment explanation
Indices: 111345--111380 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 13
111335 CAATACAGAC
111345 AAACACCCTACAA
1 AAACACCCTACAA
111358 AAACACCCT---A
1 AAACACCCTACAA
111368 AAACACCCTACAA
1 AAACACCCTACAA
111381 CACCCTAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 6
0.77 0.00 0.23
Matches are distributed among these distances:
10 10 0.50
13 10 0.50
ACGTcount: A:0.53, C:0.39, G:0.00, T:0.08
Consensus pattern (13 bp):
AAACACCCTACAA
Left flanking sequence: Indices 110845 -- 111344
AGGAGGTGGGTGAGTGGGTGGAGTGGAGTGGAGTGGGAGTGGAATGGGCAGTGGACAACAGTGGA
CAAAATTGGAGAGGAGTGGACAAAAGTGAACAGAGCTGTAGAAAACAGCGAAGAATGGACACTGA
CACTGAGTACTGGCCACTGAACACTTGATAGCCACTGAACGTTTGATACCCACTGGACATTTCAT
AGCCACTAAACACTGAACATCCACTGTACCTCGCTATATCTTGTGGAATGGTCTTGATCTAAGGG
GGAAGCTTATTGCAGAGCTGGTACGATTTGCCCGTGTTGAGTGATGACCAGAACCACTTCCGCAA
TTGCACCATCCTTACATAGTCAGATAATAGTAATAATCCAAGTTTTCACGCTTCGTCCGGTGCTA
CCCTGTGCTCCGCACCACACTCCCTTAATCCGTGTGCACCGGTGTGCCACCGTGTGCTAGTGTGC
CACCGCGTCCGAGTCAAATCTATACCACGTTAAAACAATACAGAC
Right flanking sequence: Indices 111381 -- 111880
CACCCTAAAACCCTACAAATTCGTTCTCTATGGTCGCTGACCGTGTGTATTACCTAGTCCAAGTC
GGTGATCTCGACGATCTGGGGCCCCCCAGCGGGCTCCAGCACCTCCTCCACCCGCTCCACCGTCA
CAGGCGACTGGGGCTTCTCCACCTTGGGCTCCGCCGGCTTTTCCACCTTGGGGGCCTCCTTCTTC
TCTTCCTTCTTCACTTCCTCCTTTTTCTCCTCCTTCTTCGCGTTCTTCTTGCCCTTCTTCGCGGG
CTCGGGCTTGGCCTCCTCCAGCTTTGCCACCTGGTAGTGCCACAACTCCAGCAACGACGCCAGAC
GGTCGTCCATCGCATACAACCGCCGGCGCAACGCCTCGTTGAAGCACACCTCCTGGCACACGGGG
AAAAACGTCTGCACCCACCCCTTCTTGAAGGACTCGCACTCGCGGGCAATGTCCTGGATCTCCAA
CTCCTGGAACTTGACCTGGATCTCGTACTGCTGGTGGATGTCGTC
Found at i:111372 original size:10 final size:10
Alignment explanation
Indices: 111357--111391 Score: 61
Period size: 10 Copynumber: 3.5 Consensus size: 10
111347 ACACCCTACA
111357 AAAACACCCT
1 AAAACACCCT
111367 AAAACACCCT
1 AAAACACCCT
*
111377 ACAACACCCT
1 AAAACACCCT
111387 AAAAC
1 AAAAC
111392 CCTACAAATT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
10 23 1.00
ACGTcount: A:0.51, C:0.40, G:0.00, T:0.09
Consensus pattern (10 bp):
AAAACACCCT
Left flanking sequence: Indices 110857 -- 111356
AGTGGGTGGAGTGGAGTGGAGTGGGAGTGGAATGGGCAGTGGACAACAGTGGACAAAATTGGAGA
GGAGTGGACAAAAGTGAACAGAGCTGTAGAAAACAGCGAAGAATGGACACTGACACTGAGTACTG
GCCACTGAACACTTGATAGCCACTGAACGTTTGATACCCACTGGACATTTCATAGCCACTAAACA
CTGAACATCCACTGTACCTCGCTATATCTTGTGGAATGGTCTTGATCTAAGGGGGAAGCTTATTG
CAGAGCTGGTACGATTTGCCCGTGTTGAGTGATGACCAGAACCACTTCCGCAATTGCACCATCCT
TACATAGTCAGATAATAGTAATAATCCAAGTTTTCACGCTTCGTCCGGTGCTACCCTGTGCTCCG
CACCACACTCCCTTAATCCGTGTGCACCGGTGTGCCACCGTGTGCTAGTGTGCCACCGCGTCCGA
GTCAAATCTATACCACGTTAAAACAATACAGACAAACACCCTACA
Right flanking sequence: Indices 111392 -- 111891
CCTACAAATTCGTTCTCTATGGTCGCTGACCGTGTGTATTACCTAGTCCAAGTCGGTGATCTCGA
CGATCTGGGGCCCCCCAGCGGGCTCCAGCACCTCCTCCACCCGCTCCACCGTCACAGGCGACTGG
GGCTTCTCCACCTTGGGCTCCGCCGGCTTTTCCACCTTGGGGGCCTCCTTCTTCTCTTCCTTCTT
CACTTCCTCCTTTTTCTCCTCCTTCTTCGCGTTCTTCTTGCCCTTCTTCGCGGGCTCGGGCTTGG
CCTCCTCCAGCTTTGCCACCTGGTAGTGCCACAACTCCAGCAACGACGCCAGACGGTCGTCCATC
GCATACAACCGCCGGCGCAACGCCTCGTTGAAGCACACCTCCTGGCACACGGGGAAAAACGTCTG
CACCCACCCCTTCTTGAAGGACTCGCACTCGCGGGCAATGTCCTGGATCTCCAACTCCTGGAACT
TGACCTGGATCTCGTACTGCTGGTGGATGTCGTCGCCAATCAACC
Found at i:111373 original size:23 final size:22
Alignment explanation
Indices: 111345--111399 Score: 73
Period size: 23 Copynumber: 2.6 Consensus size: 22
111335 CAATACAGAC
111345 AAACACCCTACAAAAACACCCT
1 AAACACCCTACAAAAACACCCT
111367 AAAACACCCTAC---AACACCCT
1 -AAACACCCTACAAAAACACCCT
111387 AAA-ACCCTACAAA
1 AAACACCCTACAAA
111400 TTCGTTCTCT
Statistics
Matches: 29, Mismatches: 0, Indels: 8
0.78 0.00 0.22
Matches are distributed among these distances:
18 7 0.24
19 3 0.10
20 8 0.28
23 11 0.38
ACGTcount: A:0.51, C:0.40, G:0.00, T:0.09
Consensus pattern (22 bp):
AAACACCCTACAAAAACACCCT
Left flanking sequence: Indices 110845 -- 111344
AGGAGGTGGGTGAGTGGGTGGAGTGGAGTGGAGTGGGAGTGGAATGGGCAGTGGACAACAGTGGA
CAAAATTGGAGAGGAGTGGACAAAAGTGAACAGAGCTGTAGAAAACAGCGAAGAATGGACACTGA
CACTGAGTACTGGCCACTGAACACTTGATAGCCACTGAACGTTTGATACCCACTGGACATTTCAT
AGCCACTAAACACTGAACATCCACTGTACCTCGCTATATCTTGTGGAATGGTCTTGATCTAAGGG
GGAAGCTTATTGCAGAGCTGGTACGATTTGCCCGTGTTGAGTGATGACCAGAACCACTTCCGCAA
TTGCACCATCCTTACATAGTCAGATAATAGTAATAATCCAAGTTTTCACGCTTCGTCCGGTGCTA
CCCTGTGCTCCGCACCACACTCCCTTAATCCGTGTGCACCGGTGTGCCACCGTGTGCTAGTGTGC
CACCGCGTCCGAGTCAAATCTATACCACGTTAAAACAATACAGAC
Right flanking sequence: Indices 111400 -- 111899
TTCGTTCTCTATGGTCGCTGACCGTGTGTATTACCTAGTCCAAGTCGGTGATCTCGACGATCTGG
GGCCCCCCAGCGGGCTCCAGCACCTCCTCCACCCGCTCCACCGTCACAGGCGACTGGGGCTTCTC
CACCTTGGGCTCCGCCGGCTTTTCCACCTTGGGGGCCTCCTTCTTCTCTTCCTTCTTCACTTCCT
CCTTTTTCTCCTCCTTCTTCGCGTTCTTCTTGCCCTTCTTCGCGGGCTCGGGCTTGGCCTCCTCC
AGCTTTGCCACCTGGTAGTGCCACAACTCCAGCAACGACGCCAGACGGTCGTCCATCGCATACAA
CCGCCGGCGCAACGCCTCGTTGAAGCACACCTCCTGGCACACGGGGAAAAACGTCTGCACCCACC
CCTTCTTGAAGGACTCGCACTCGCGGGCAATGTCCTGGATCTCCAACTCCTGGAACTTGACCTGG
ATCTCGTACTGCTGGTGGATGTCGTCGCCAATCAACCCGTCGGCG
Found at i:111398 original size:18 final size:20
Alignment explanation
Indices: 111345--111391 Score: 67
Period size: 20 Copynumber: 2.2 Consensus size: 20
111335 CAATACAGAC
111345 AAACACCCTACAAAAACACCCTA
1 AAACACCCTAC---AACACCCTA
111368 AAACACCCTACAACACCCTA
1 AAACACCCTACAACACCCTA
111388 AAAC
1 AAAC
111392 CCTACAAATT
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
20 13 0.54
23 11 0.46
ACGTcount: A:0.51, C:0.40, G:0.00, T:0.09
Consensus pattern (20 bp):
AAACACCCTACAACACCCTA
Left flanking sequence: Indices 110845 -- 111344
AGGAGGTGGGTGAGTGGGTGGAGTGGAGTGGAGTGGGAGTGGAATGGGCAGTGGACAACAGTGGA
CAAAATTGGAGAGGAGTGGACAAAAGTGAACAGAGCTGTAGAAAACAGCGAAGAATGGACACTGA
CACTGAGTACTGGCCACTGAACACTTGATAGCCACTGAACGTTTGATACCCACTGGACATTTCAT
AGCCACTAAACACTGAACATCCACTGTACCTCGCTATATCTTGTGGAATGGTCTTGATCTAAGGG
GGAAGCTTATTGCAGAGCTGGTACGATTTGCCCGTGTTGAGTGATGACCAGAACCACTTCCGCAA
TTGCACCATCCTTACATAGTCAGATAATAGTAATAATCCAAGTTTTCACGCTTCGTCCGGTGCTA
CCCTGTGCTCCGCACCACACTCCCTTAATCCGTGTGCACCGGTGTGCCACCGTGTGCTAGTGTGC
CACCGCGTCCGAGTCAAATCTATACCACGTTAAAACAATACAGAC
Right flanking sequence: Indices 111392 -- 111891
CCTACAAATTCGTTCTCTATGGTCGCTGACCGTGTGTATTACCTAGTCCAAGTCGGTGATCTCGA
CGATCTGGGGCCCCCCAGCGGGCTCCAGCACCTCCTCCACCCGCTCCACCGTCACAGGCGACTGG
GGCTTCTCCACCTTGGGCTCCGCCGGCTTTTCCACCTTGGGGGCCTCCTTCTTCTCTTCCTTCTT
CACTTCCTCCTTTTTCTCCTCCTTCTTCGCGTTCTTCTTGCCCTTCTTCGCGGGCTCGGGCTTGG
CCTCCTCCAGCTTTGCCACCTGGTAGTGCCACAACTCCAGCAACGACGCCAGACGGTCGTCCATC
GCATACAACCGCCGGCGCAACGCCTCGTTGAAGCACACCTCCTGGCACACGGGGAAAAACGTCTG
CACCCACCCCTTCTTGAAGGACTCGCACTCGCGGGCAATGTCCTGGATCTCCAACTCCTGGAACT
TGACCTGGATCTCGTACTGCTGGTGGATGTCGTCGCCAATCAACC
Found at i:112325 original size:13 final size:13
Alignment explanation
Indices: 112307--112347 Score: 57
Period size: 13 Copynumber: 3.2 Consensus size: 13
112297 CGAGAAGGGT
*
112307 GGTGGAGGTGGAG
1 GGTGGAGGTGAAG
112320 GGTGGAAGG-GAAG
1 GGTGG-AGGTGAAG
112333 GGTGGAGGTGAAG
1 GGTGGAGGTGAAG
112346 GG
1 GG
112348 GAAGAGGTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
12 3 0.12
13 19 0.76
14 3 0.12
ACGTcount: A:0.22, C:0.00, G:0.66, T:0.12
Consensus pattern (13 bp):
GGTGGAGGTGAAG
Left flanking sequence: Indices 111807 -- 112306
CACTCGCGGGCAATGTCCTGGATCTCCAACTCCTGGAACTTGACCTGGATCTCGTACTGCTGGTG
GATGTCGTCGCCAATCAACCCGTCGGCGTAAAGCTTGGTGAAGTTGCCCTCGAACTCCTTGAGTT
TCATCAGCCGGCGGATGGCCTCGACGGCCCGGCGCATCAACGCGGCCTTCATCACCTTCTCGTGG
GGCTTCTGCTCCTTGGGGGCGTCCGGGTTGGTGTACTGCTGCTTCAAAAACTCGTAGAACTGGGC
CGGGCGGTTCTCGCCAAAGAGCGGCTCGAAGTGCTGGAGCTTCTGGAGACGCTTGCGGCGGTACA
CCACCGAAAACACCACAAAGATACCCAAGAGCAACAGCACGTAGATGATCGGCGTGAACACCGAG
ATCTTGGGGATGTCCTCAATCGGTTGTGTTTCCTCCGCCATGGTCGTAGTGGTTGGGTGGTGGGG
TTTTTCTCGATACGTGGCGCGTCGCGTGAGCCGCACGAGAAGGGT
Right flanking sequence: Indices 112348 -- 112847
GAAGAGGTGGAAGGGTATAGGGGTGTTAGGTGGTGGAGGGGTGGCGAGTGGGGTGTTTGAGTTTG
GTTATTTTGGTGTATTTTGGGTAGTATAGGGTTGTACAGTGGGTGGGTGTCGCGGTGGAGTGGTG
AAAAGTGAAGAGTACTGGATCATGTGAAAGGGTGAAAGAGAGAGGTGGGATTTTGAGAAGGGCCA
GGGATGGTTGCAGTGGTTGCTGGTTTTGGTTAATGTGCTCGTTTGCTACAGAACGGGGTGTTTAG
TTTGATTTTTCACTGCCTCAAAGTGACTGCCTTAAAGACTACCCTAGTAGATAAGGAAGGAAGCA
GTCACAAAGGGAAGAACCAGAACATGACACGTGTATACCGTGCTTACTGTTTGTAACAAGTATAC
TAGCCATGAACCCACCATGGACCCACCCCCATAGCCCCCTTAGCCCTCGTAGCTTCCCATAGTTC
CCTTCTTCACTTTCTCACGCGTCCTTCCACCACCTCAAAAAACCG
Found at i:112338 original size:20 final size:21
Alignment explanation
Indices: 112311--112363 Score: 67
Period size: 20 Copynumber: 2.6 Consensus size: 21
112301 AAGGGTGGTG
112311 GAGGTGGAGGGTGGAA-GGGAA
1 GAGGTGGAGGGT-GAAGGGGAA
112332 G-GGTGGA-GGTGAAGGGGAA
1 GAGGTGGAGGGTGAAGGGGAA
112351 GAGGTGGAAGGGT
1 GAGGTGG-AGGGT
112364 ATAGGGGTGT
Statistics
Matches: 28, Mismatches: 0, Indels: 7
0.80 0.00 0.20
Matches are distributed among these distances:
18 3 0.11
19 9 0.32
20 11 0.39
21 2 0.07
22 3 0.11
ACGTcount: A:0.26, C:0.00, G:0.62, T:0.11
Consensus pattern (21 bp):
GAGGTGGAGGGTGAAGGGGAA
Left flanking sequence: Indices 111811 -- 112310
CGCGGGCAATGTCCTGGATCTCCAACTCCTGGAACTTGACCTGGATCTCGTACTGCTGGTGGATG
TCGTCGCCAATCAACCCGTCGGCGTAAAGCTTGGTGAAGTTGCCCTCGAACTCCTTGAGTTTCAT
CAGCCGGCGGATGGCCTCGACGGCCCGGCGCATCAACGCGGCCTTCATCACCTTCTCGTGGGGCT
TCTGCTCCTTGGGGGCGTCCGGGTTGGTGTACTGCTGCTTCAAAAACTCGTAGAACTGGGCCGGG
CGGTTCTCGCCAAAGAGCGGCTCGAAGTGCTGGAGCTTCTGGAGACGCTTGCGGCGGTACACCAC
CGAAAACACCACAAAGATACCCAAGAGCAACAGCACGTAGATGATCGGCGTGAACACCGAGATCT
TGGGGATGTCCTCAATCGGTTGTGTTTCCTCCGCCATGGTCGTAGTGGTTGGGTGGTGGGGTTTT
TCTCGATACGTGGCGCGTCGCGTGAGCCGCACGAGAAGGGTGGTG
Right flanking sequence: Indices 112364 -- 112863
ATAGGGGTGTTAGGTGGTGGAGGGGTGGCGAGTGGGGTGTTTGAGTTTGGTTATTTTGGTGTATT
TTGGGTAGTATAGGGTTGTACAGTGGGTGGGTGTCGCGGTGGAGTGGTGAAAAGTGAAGAGTACT
GGATCATGTGAAAGGGTGAAAGAGAGAGGTGGGATTTTGAGAAGGGCCAGGGATGGTTGCAGTGG
TTGCTGGTTTTGGTTAATGTGCTCGTTTGCTACAGAACGGGGTGTTTAGTTTGATTTTTCACTGC
CTCAAAGTGACTGCCTTAAAGACTACCCTAGTAGATAAGGAAGGAAGCAGTCACAAAGGGAAGAA
CCAGAACATGACACGTGTATACCGTGCTTACTGTTTGTAACAAGTATACTAGCCATGAACCCACC
ATGGACCCACCCCCATAGCCCCCTTAGCCCTCGTAGCTTCCCATAGTTCCCTTCTTCACTTTCTC
ACGCGTCCTTCCACCACCTCAAAAAACCGGATTCCGTGGTGTATA
Found at i:113198 original size:11 final size:11
Alignment explanation
Indices: 113160--113190 Score: 62
Period size: 11 Copynumber: 2.8 Consensus size: 11
113150 ACACTTCCCA
113160 ACCCCTCTTCC
1 ACCCCTCTTCC
113171 ACCCCTCTTCC
1 ACCCCTCTTCC
113182 ACCCCTCTT
1 ACCCCTCTT
113191 TCTCCCCTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.10, C:0.61, G:0.00, T:0.29
Consensus pattern (11 bp):
ACCCCTCTTCC
Left flanking sequence: Indices 112660 -- 113159
AAGGAAGGAAGCAGTCACAAAGGGAAGAACCAGAACATGACACGTGTATACCGTGCTTACTGTTT
GTAACAAGTATACTAGCCATGAACCCACCATGGACCCACCCCCATAGCCCCCTTAGCCCTCGTAG
CTTCCCATAGTTCCCTTCTTCACTTTCTCACGCGTCCTTCCACCACCTCAAAAAACCGGATTCCG
TGGTGTATAGGGAGATTTCGCGCGAGACCTGACTAAGACACCCATTGTTCCACACAGCCCCACCC
ACGATCAGAGGATCGACGGTCGCTAGCGATCACGAGAGCCACCGGCGGGCGCCTCAAAGTCTATT
TACGAGTATAGTCGACCTACTTTTCTTACGGTCATGTAGTGATTTCTTGGGGTGGTCGATTGACA
CCCCATAGGTTCGATCCCTGACTACCTGGCGCTATACAGACCAGCCTGCCATCTTCTCAACCCAC
CTACCACCTTAGATCCCACTACCCTACATTCTATCACACTTCCCA
Right flanking sequence: Indices 113191 -- 113690
TCTCCCCTATCGCTCTCAGACACGCGCTGGCCCGAGTGTCGGCCGTGTCCCCAGTGCATAACCCG
GGGCAGGTCATTGTTCGGGCCAAACACCGTCAATGGCCGTCACCGTTATCGTAGCTGGCCAACGT
CGCCAATGGCTCCTGAAATCCCGCGGCAGTCGGGTGCTTGGCTGCATTTGTCCCAACTGGGAAGG
GTTTACGGGGTAAACGGACATAACCCGCGCGAACCCAGCGAATCAAAGACTCCACACCACGACTA
TCTGACATTCCCTGTAACCTTCCTAAACCGTCCTCTTACACAAACGTCTCTTTTGCCACAAACTC
GTGTTTACTCTTCGCAACCGTTTGCTCATGCAGAGACTGACCATGTCAGTCGAGGGCTGCAAAAT
GCACACCGGCCGCTGCGGAACCACCGGAACCACCACCCTGCCACTTTGAGCCCCGTATCACCACA
CACATTCTTCTCCCAAGCATTTATCGCCATTTTTCCTCTTTTCGG
Found at i:116738 original size:17 final size:17
Alignment explanation
Indices: 116697--116766 Score: 86
Period size: 17 Copynumber: 4.0 Consensus size: 17
116687 TTCTCACCTG
116697 GAACTTACCCGAGTCTC
1 GAACTTACCCGAGTCTC
*
116714 TAGAACTTACCCCAGTCTC
1 --GAACTTACCCGAGTCTC
* *
116733 GAACTTACACTAGTCTC
1 GAACTTACCCGAGTCTC
*
116750 GAGCTTACCCGAGTCTC
1 GAACTTACCCGAGTCTC
116767 TGGAGCTTAT
Statistics
Matches: 45, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
17 29 0.64
19 16 0.36
ACGTcount: A:0.24, C:0.34, G:0.16, T:0.26
Consensus pattern (17 bp):
GAACTTACCCGAGTCTC
Left flanking sequence: Indices 116197 -- 116696
ATTCGTCGGAGTATGAATACAATAACAATGCAAGGGTTGTTGCCAAGTAACGACTGTGGGATTCC
ATGCATCTCAGATACGAGCAGAGCCTACGCGGCGATCTCGAGACAGCTGGGCAATTTACACGTGC
ATACCATATGTTATGCTTAAAGGCTCTTACTCCAACACGGTAGCCGTGCAGATCTAATTCAGAGC
TTATTTGGTACCTTGTCTAGACTGCCAGTGACCGTACAAATCGTAGCTTGGACCAAATTATCATG
GTGGAGATAGAATTTGCGAATCTTAGCCGTAACTGTAGAGTTTTGCACCCCACACTCTCCACATC
TACCTACCTCCGTGTCTCAAACCTACACCATGGCACCATCTCTGACCGCCTCGTGGCTGCACCCA
CCCTGTTGCCCACGGGTTCGGTTCACATGCCACCCCCAGGCACCACCTACTTTGAATCTTCTCTC
GCGACGTATCATGCAAATAAGTAACGGTCCGGCAGTTCTCACCTG
Right flanking sequence: Indices 116767 -- 117266
TGGAGCTTATGCGCTCATCTCGCGGCCCATTTGCAACCTTGGCATGAAACGGTCCCGACAAACCC
CGTTTCGGGTCCGAGGCACGAGTCTACGTATACTCCCCTCGCTTCCGATCTCGTTGTCTCCAGAA
CTGGTCACCCCACATTGTCCCGCGGGGTTGCCCCATAATTACATCTAGTGTCGACAGGAACTAGA
CACTTTTTGTGAGCGGTCGCCAACCATGTAATTATCCGCCCGGCCCCCAGGAACGAAGGCGGTGG
CGCCACTACCGTTCGTGGTAGACGCTGCGACCCTGTCTCCCTATGCGCTGACCACCACCTGGTGT
CACCAGACTCACTACACCCACGCACCACTGCCACCCACTACTATGCACTCACTACTATGCCACCC
ACTATGCCACCCAAAAACCACCCTACTCTGTAATCCAGACCCACGCCCCCTGGCCACCACCACCA
CTCCCTTGTGACCCGGCTCTAACCGGTCTTACGACACATAAGCCG
Found at i:117162 original size:12 final size:12
Alignment explanation
Indices: 117145--117169 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
117135 TGCACTCACT
117145 ACTATGCCACCC
1 ACTATGCCACCC
117157 ACTATGCCACCC
1 ACTATGCCACCC
117169 A
1 A
117170 AAAACCACCC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.28, C:0.48, G:0.08, T:0.16
Consensus pattern (12 bp):
ACTATGCCACCC
Left flanking sequence: Indices 116645 -- 117144
TTCTCTCGCGACGTATCATGCAAATAAGTAACGGTCCGGCAGTTCTCACCTGGAACTTACCCGAG
TCTCTAGAACTTACCCCAGTCTCGAACTTACACTAGTCTCGAGCTTACCCGAGTCTCTGGAGCTT
ATGCGCTCATCTCGCGGCCCATTTGCAACCTTGGCATGAAACGGTCCCGACAAACCCCGTTTCGG
GTCCGAGGCACGAGTCTACGTATACTCCCCTCGCTTCCGATCTCGTTGTCTCCAGAACTGGTCAC
CCCACATTGTCCCGCGGGGTTGCCCCATAATTACATCTAGTGTCGACAGGAACTAGACACTTTTT
GTGAGCGGTCGCCAACCATGTAATTATCCGCCCGGCCCCCAGGAACGAAGGCGGTGGCGCCACTA
CCGTTCGTGGTAGACGCTGCGACCCTGTCTCCCTATGCGCTGACCACCACCTGGTGTCACCAGAC
TCACTACACCCACGCACCACTGCCACCCACTACTATGCACTCACT
Right flanking sequence: Indices 117170 -- 117669
AAAACCACCCTACTCTGTAATCCAGACCCACGCCCCCTGGCCACCACCACCACTCCCTTGTGACC
CGGCTCTAACCGGTCTTACGACACATAAGCCGCGTCCTCGGTTGCACGAAACGTTTATTTTTGTG
TCGTAAACCAGCAAGTGAGACTTCGAGAACAATCGAAACCGGCCAAATAAATACCAAAAAGCCAA
CACCACACACGTAGCAGACTCGTAGCACACCCCACAACTCCCCACAACCCCCTACTCACACCCCT
ACCCAGCCACACCGCCGGCTCTACCTCCCGTTCTCCCGCGCATTCCCCCACCCTGTCTCTCCACC
GTCACGAGCCCGCTCCCCTCATTAACGGAGATCACCTTGTCCCAAACCCTATCCCCACACCACCA
CCTTCCCCACCCATTGATGCTCTTCAAGAGGCTGCTGACCAAAAAGAAGGCGGCGGACACCGCAG
CTGACCCGCCAAAACCCCCACCCAAGAGCCCTGGGATGATGTCGC
Found at i:121251 original size:10 final size:10
Alignment explanation
Indices: 121236--121262 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
121226 AAACCTCTAG
121236 ACACCCTTTT
1 ACACCCTTTT
121246 ACACCCTTTT
1 ACACCCTTTT
121256 ACACCCT
1 ACACCCT
121263 CCCACTACTC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.22, C:0.44, G:0.00, T:0.33
Consensus pattern (10 bp):
ACACCCTTTT
Left flanking sequence: Indices 120736 -- 121235
TACGGGGCCAAGAGAAGCTGAAATGGGCTTATAGTGGAGTGCCCAGCATTGTAAAGTCTGCCAAG
GTTTAGAAATCCCAAAAGTAGCTCCTACAACTCACACAATGGCCACACCCCTACTGACCATTACC
CACACCCCCGTCGTTATGAGCACGGTTGCGTGGTCTAGTGGTATGACGTCTCCTTCACACGGAGA
AGATCCTGGGTTCGATCCCCAGCGCGATCATTTTTGCGTTTTTTTACGATCCGGGGGCTGCGATC
TCATCGGGCACGATGAGGCTCGGAGTTTAGATGCGGCGGACGTCATCGCGTGGAGAACGGTCCGA
TTTGGCCCGAAATCCCCACGCCCGGGAGCCGGTCCCCTCGTTGCTTAGTGTCGTGTGGCTATAAC
GTTTCCACGGTGTCCTGTCTACATCAGCTGATCGGGTAGTTTTGAGTATGAGCCACAAGAGCACG
TAAACACCACGAATTTTTGTGTAGAACCCACGGGTAAACCTCTAG
Right flanking sequence: Indices 121263 -- 121762
CCCACTACTCCCACACCTTCATCTCGCTGTGTTCCCCCCGCAAAAATCACCCCATTGCTCACGAG
ACTTTGACAGCAACCGTTGGTCCTAAATCCGGCTAATGGCCCTACGCTCGGGCGATGCTAAAAAT
ATTGGCTGTGCCAAATGGGCCCACTTCAGCCCTGTAATCACATGGAGTCATCACCCGGGCCAAAC
CCGCAGGCGTTGCCGTAGCGACCTCCAGCAGTGACCGGTGCGTTGACGTCGCTCGCGTTTTCGCT
AGCCCTAACCGACCGTTGTCGCAGCCCACCAGCCAACGGTGCCAAGCCCGCCTTGAAAGCGTAGG
CAAAGCCTTGGGGAAAGCTGGGTGGGCGGGCGAGACAAAAAGGCCGTCGGTGGTGGTTCGCCGTG
TTTGTAGGGCACTTAGTGGTGCCACTTGGGGGTACCCGTCTGTGCCGGTAAACACCCAGTAGCCC
TAGATAAACGCACTCTCCACAGCCTCTACACCCACCCCCAGCCCT
Found at i:122589 original size:9 final size:10
Alignment explanation
Indices: 122569--122598 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
122559 CATTGGTCGA
122569 TTTGGTCTTT
1 TTTGGTCTTT
122579 TTTGGTCTTT
1 TTTGGTCTTT
*
122589 TTTGATCTTT
1 TTTGGTCTTT
122599 CCTGATCAGT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.03, C:0.10, G:0.17, T:0.70
Consensus pattern (10 bp):
TTTGGTCTTT
Left flanking sequence: Indices 122069 -- 122568
TGTGGGGAAACGCCGAAACATCGTCATCTACCAGCGCTACCCCGACCTCCGAGCAACAACCACCG
ATTCCATCCGGTTGCTACACCCCCCAGCTACCCCTGCTAACTCCCCCAACCTGTTTCAGAGCCCG
TTTCGGACTTTTTCTGTTGCAAGTCCGATCGCCTGAGCCCAGCCTCCAGCAATAAAACCGGGTAT
ATAAGCGCCCCAGAAACTCGGCCGACACACACACCCCAGCCACCCCGACTAGCGTGTGTACTTGC
ACCGATACCCTTCCCCGTTACTCCCCGAAGTCCTACTGTGGATCGTTGGATCGTGTCCACTTGGG
TTTGAAAAGTTTGAGATCGGAACATTTGCTGGTGTTACAGTCTAGCTGTTCCTTCTGTTTCCTTC
CTTAACCGTTTCCTTGTCCCGGTAACCGTTTTTTGGTACCGTAAGTGACCGTTTATTGGCCTTTT
GAAAAACCACACTCAAACGGTTTTTTTTCGATTTCCATTGGTCGA
Right flanking sequence: Indices 122599 -- 123098
CCTGATCAGTTTTTGGTTTAATATTGGTCTATTTTTGGTCTATTTTTGATCCACTTGTCCATTTT
GGTCTACTTTTGATCTACTTGTCCATTTTTGGTCCATTTGTCCACTTTATTGGTCTCATTGGTCA
CTTCCTTAGCTGACCTAACCTTCTAGCTGACCTAACCTTCTAGCTGACCTAACCTTTTATCTTTT
CTTCTTTCATAATGCCTGTTTTCACCATTTCCCACGTGGAAAACGTGCGGGTGTGCGTGGTGATG
GTGGGCTTGCCCGCGCGCGGCAAGCTGCTTATTGCCCAGAAGATCGTGCGCTACCTTTCGTGGCT
CCTGATCAAGTCCAAGTGCTTCAACGTGGGCAACTACCGCCGCGAGCTTGCCAGCGACGTCGAGG
CCACGCTGGAGTTCTTTTCCCCCGCCAACGAGACCGGGTTGAGCGTGCGCAAACGGGCCATTGAC
CTCGCGGTGGCCGACATGATGCGGTGGTTCACCGACGAGCAGGGC
Found at i:122636 original size:11 final size:11
Alignment explanation
Indices: 122569--122646 Score: 56
Period size: 11 Copynumber: 7.4 Consensus size: 11
122559 CATTGGTCGA
122569 TTTGGTCT-TT
1 TTTGGTCTATT
122579 TTTGGTCT-TT
1 TTTGGTCTATT
*
122589 TTTGATCT-TT
1 TTTGGTCTATT
** *
122599 CCTGATC-AGTT
1 TTTGGTCTA-TT
* *
122610 TTTGGTTTAAT
1 TTTGGTCTATT
*
122621 ATTGGTCTATT
1 TTTGGTCTATT
122632 TTTGGTCTATT
1 TTTGGTCTATT
122643 TTTG
1 TTTG
122647 ATCCACTTGT
Statistics
Matches: 53, Mismatches: 12, Indels: 5
0.76 0.17 0.07
Matches are distributed among these distances:
10 24 0.45
11 28 0.53
12 1 0.02
ACGTcount: A:0.10, C:0.10, G:0.18, T:0.62
Consensus pattern (11 bp):
TTTGGTCTATT
Left flanking sequence: Indices 122069 -- 122568
TGTGGGGAAACGCCGAAACATCGTCATCTACCAGCGCTACCCCGACCTCCGAGCAACAACCACCG
ATTCCATCCGGTTGCTACACCCCCCAGCTACCCCTGCTAACTCCCCCAACCTGTTTCAGAGCCCG
TTTCGGACTTTTTCTGTTGCAAGTCCGATCGCCTGAGCCCAGCCTCCAGCAATAAAACCGGGTAT
ATAAGCGCCCCAGAAACTCGGCCGACACACACACCCCAGCCACCCCGACTAGCGTGTGTACTTGC
ACCGATACCCTTCCCCGTTACTCCCCGAAGTCCTACTGTGGATCGTTGGATCGTGTCCACTTGGG
TTTGAAAAGTTTGAGATCGGAACATTTGCTGGTGTTACAGTCTAGCTGTTCCTTCTGTTTCCTTC
CTTAACCGTTTCCTTGTCCCGGTAACCGTTTTTTGGTACCGTAAGTGACCGTTTATTGGCCTTTT
GAAAAACCACACTCAAACGGTTTTTTTTCGATTTCCATTGGTCGA
Right flanking sequence: Indices 122647 -- 123146
ATCCACTTGTCCATTTTGGTCTACTTTTGATCTACTTGTCCATTTTTGGTCCATTTGTCCACTTT
ATTGGTCTCATTGGTCACTTCCTTAGCTGACCTAACCTTCTAGCTGACCTAACCTTCTAGCTGAC
CTAACCTTTTATCTTTTCTTCTTTCATAATGCCTGTTTTCACCATTTCCCACGTGGAAAACGTGC
GGGTGTGCGTGGTGATGGTGGGCTTGCCCGCGCGCGGCAAGCTGCTTATTGCCCAGAAGATCGTG
CGCTACCTTTCGTGGCTCCTGATCAAGTCCAAGTGCTTCAACGTGGGCAACTACCGCCGCGAGCT
TGCCAGCGACGTCGAGGCCACGCTGGAGTTCTTTTCCCCCGCCAACGAGACCGGGTTGAGCGTGC
GCAAACGGGCCATTGACCTCGCGGTGGCCGACATGATGCGGTGGTTCACCGACGAGCAGGGCGTG
GTGGGCGTTTTGGACGCCACCAACTCCACTAGGGCCCGCCGAGCC
Found at i:122696 original size:30 final size:30
Alignment explanation
Indices: 122629--122697 Score: 113
Period size: 29 Copynumber: 2.3 Consensus size: 30
122619 ATATTGGTCT
*
122629 ATTTTTGGTCTATTTTTGATCCACTTGTCC
1 ATTTTTGGTCTACTTTTGATCCACTTGTCC
*
122659 A-TTTTGGTCTACTTTTGATCTACTTGTCC
1 ATTTTTGGTCTACTTTTGATCCACTTGTCC
122688 ATTTTTGGTC
1 ATTTTTGGTC
122698 CATTTGTCCA
Statistics
Matches: 36, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
29 27 0.75
30 9 0.25
ACGTcount: A:0.13, C:0.19, G:0.14, T:0.54
Consensus pattern (30 bp):
ATTTTTGGTCTACTTTTGATCCACTTGTCC
Left flanking sequence: Indices 122129 -- 122628
CACCGATTCCATCCGGTTGCTACACCCCCCAGCTACCCCTGCTAACTCCCCCAACCTGTTTCAGA
GCCCGTTTCGGACTTTTTCTGTTGCAAGTCCGATCGCCTGAGCCCAGCCTCCAGCAATAAAACCG
GGTATATAAGCGCCCCAGAAACTCGGCCGACACACACACCCCAGCCACCCCGACTAGCGTGTGTA
CTTGCACCGATACCCTTCCCCGTTACTCCCCGAAGTCCTACTGTGGATCGTTGGATCGTGTCCAC
TTGGGTTTGAAAAGTTTGAGATCGGAACATTTGCTGGTGTTACAGTCTAGCTGTTCCTTCTGTTT
CCTTCCTTAACCGTTTCCTTGTCCCGGTAACCGTTTTTTGGTACCGTAAGTGACCGTTTATTGGC
CTTTTGAAAAACCACACTCAAACGGTTTTTTTTCGATTTCCATTGGTCGATTTGGTCTTTTTTGG
TCTTTTTTGATCTTTCCTGATCAGTTTTTGGTTTAATATTGGTCT
Right flanking sequence: Indices 122698 -- 123197
CATTTGTCCACTTTATTGGTCTCATTGGTCACTTCCTTAGCTGACCTAACCTTCTAGCTGACCTA
ACCTTCTAGCTGACCTAACCTTTTATCTTTTCTTCTTTCATAATGCCTGTTTTCACCATTTCCCA
CGTGGAAAACGTGCGGGTGTGCGTGGTGATGGTGGGCTTGCCCGCGCGCGGCAAGCTGCTTATTG
CCCAGAAGATCGTGCGCTACCTTTCGTGGCTCCTGATCAAGTCCAAGTGCTTCAACGTGGGCAAC
TACCGCCGCGAGCTTGCCAGCGACGTCGAGGCCACGCTGGAGTTCTTTTCCCCCGCCAACGAGAC
CGGGTTGAGCGTGCGCAAACGGGCCATTGACCTCGCGGTGGCCGACATGATGCGGTGGTTCACCG
ACGAGCAGGGCGTGGTGGGCGTTTTGGACGCCACCAACTCCACTAGGGCCCGCCGAGCCGCCATC
CTCAAGCTCTTGCGCGAAAACAGCATCGAGCCCATGTTCTTGGAG
Found at i:122704 original size:19 final size:22
Alignment explanation
Indices: 122682--122731 Score: 63
Period size: 21 Copynumber: 2.5 Consensus size: 22
122672 TTTGATCTAC
122682 TTGTCCA-TTT-TTGGTC-CAT
1 TTGTCCACTTTATTGGTCTCAT
122701 TTGTCCACTTTATTGGTCTCAT
1 TTGTCCACTTTATTGGTCTCAT
*
122723 TGGT-CACTT
1 TTGTCCACTT
122732 CCTTAGCTGA
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
19 7 0.26
20 3 0.11
21 11 0.41
22 6 0.22
ACGTcount: A:0.12, C:0.22, G:0.16, T:0.50
Consensus pattern (22 bp):
TTGTCCACTTTATTGGTCTCAT
Left flanking sequence: Indices 122182 -- 122681
ACCTGTTTCAGAGCCCGTTTCGGACTTTTTCTGTTGCAAGTCCGATCGCCTGAGCCCAGCCTCCA
GCAATAAAACCGGGTATATAAGCGCCCCAGAAACTCGGCCGACACACACACCCCAGCCACCCCGA
CTAGCGTGTGTACTTGCACCGATACCCTTCCCCGTTACTCCCCGAAGTCCTACTGTGGATCGTTG
GATCGTGTCCACTTGGGTTTGAAAAGTTTGAGATCGGAACATTTGCTGGTGTTACAGTCTAGCTG
TTCCTTCTGTTTCCTTCCTTAACCGTTTCCTTGTCCCGGTAACCGTTTTTTGGTACCGTAAGTGA
CCGTTTATTGGCCTTTTGAAAAACCACACTCAAACGGTTTTTTTTCGATTTCCATTGGTCGATTT
GGTCTTTTTTGGTCTTTTTTGATCTTTCCTGATCAGTTTTTGGTTTAATATTGGTCTATTTTTGG
TCTATTTTTGATCCACTTGTCCATTTTGGTCTACTTTTGATCTAC
Right flanking sequence: Indices 122732 -- 123231
CCTTAGCTGACCTAACCTTCTAGCTGACCTAACCTTCTAGCTGACCTAACCTTTTATCTTTTCTT
CTTTCATAATGCCTGTTTTCACCATTTCCCACGTGGAAAACGTGCGGGTGTGCGTGGTGATGGTG
GGCTTGCCCGCGCGCGGCAAGCTGCTTATTGCCCAGAAGATCGTGCGCTACCTTTCGTGGCTCCT
GATCAAGTCCAAGTGCTTCAACGTGGGCAACTACCGCCGCGAGCTTGCCAGCGACGTCGAGGCCA
CGCTGGAGTTCTTTTCCCCCGCCAACGAGACCGGGTTGAGCGTGCGCAAACGGGCCATTGACCTC
GCGGTGGCCGACATGATGCGGTGGTTCACCGACGAGCAGGGCGTGGTGGGCGTTTTGGACGCCAC
CAACTCCACTAGGGCCCGCCGAGCCGCCATCCTCAAGCTCTTGCGCGAAAACAGCATCGAGCCCA
TGTTCTTGGAGCTGTGGTGCGACGACCAGGAGCTCGTGCTCCACA
Found at i:122757 original size:17 final size:17
Alignment explanation
Indices: 122735--122784 Score: 100
Period size: 17 Copynumber: 2.9 Consensus size: 17
122725 GTCACTTCCT
122735 TAGCTGACCTAACCTTC
1 TAGCTGACCTAACCTTC
122752 TAGCTGACCTAACCTTC
1 TAGCTGACCTAACCTTC
122769 TAGCTGACCTAACCTT
1 TAGCTGACCTAACCTT
122785 TTATCTTTTC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 33 1.00
ACGTcount: A:0.24, C:0.34, G:0.12, T:0.30
Consensus pattern (17 bp):
TAGCTGACCTAACCTTC
Left flanking sequence: Indices 122235 -- 122734
GCCCAGCCTCCAGCAATAAAACCGGGTATATAAGCGCCCCAGAAACTCGGCCGACACACACACCC
CAGCCACCCCGACTAGCGTGTGTACTTGCACCGATACCCTTCCCCGTTACTCCCCGAAGTCCTAC
TGTGGATCGTTGGATCGTGTCCACTTGGGTTTGAAAAGTTTGAGATCGGAACATTTGCTGGTGTT
ACAGTCTAGCTGTTCCTTCTGTTTCCTTCCTTAACCGTTTCCTTGTCCCGGTAACCGTTTTTTGG
TACCGTAAGTGACCGTTTATTGGCCTTTTGAAAAACCACACTCAAACGGTTTTTTTTCGATTTCC
ATTGGTCGATTTGGTCTTTTTTGGTCTTTTTTGATCTTTCCTGATCAGTTTTTGGTTTAATATTG
GTCTATTTTTGGTCTATTTTTGATCCACTTGTCCATTTTGGTCTACTTTTGATCTACTTGTCCAT
TTTTGGTCCATTTGTCCACTTTATTGGTCTCATTGGTCACTTCCT
Right flanking sequence: Indices 122785 -- 123284
TTATCTTTTCTTCTTTCATAATGCCTGTTTTCACCATTTCCCACGTGGAAAACGTGCGGGTGTGC
GTGGTGATGGTGGGCTTGCCCGCGCGCGGCAAGCTGCTTATTGCCCAGAAGATCGTGCGCTACCT
TTCGTGGCTCCTGATCAAGTCCAAGTGCTTCAACGTGGGCAACTACCGCCGCGAGCTTGCCAGCG
ACGTCGAGGCCACGCTGGAGTTCTTTTCCCCCGCCAACGAGACCGGGTTGAGCGTGCGCAAACGG
GCCATTGACCTCGCGGTGGCCGACATGATGCGGTGGTTCACCGACGAGCAGGGCGTGGTGGGCGT
TTTGGACGCCACCAACTCCACTAGGGCCCGCCGAGCCGCCATCCTCAAGCTCTTGCGCGAAAACA
GCATCGAGCCCATGTTCTTGGAGCTGTGGTGCGACGACCAGGAGCTCGTGCTCCACAACATCGCC
GACGTCAAGACCACGTCGCCCGACTACCTTGGCAAGGACGTCAAG
Found at i:130583 original size:14 final size:14
Alignment explanation
Indices: 130564--130599 Score: 63
Period size: 14 Copynumber: 2.6 Consensus size: 14
130554 AGTGGTGGTA
*
130564 CCGTGCCTGCTGCT
1 CCGTGCCTACTGCT
130578 CCGTGCCTACTGCT
1 CCGTGCCTACTGCT
130592 CCGTGCCT
1 CCGTGCCT
130600 TTGGACCACG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.03, C:0.44, G:0.25, T:0.28
Consensus pattern (14 bp):
CCGTGCCTACTGCT
Left flanking sequence: Indices 130064 -- 130563
AGAAAGTTCCGGTTTGTAGCCCCGCACGATATTTGCGACCAATTACAGGAGAACCGAAGGTCATG
GCCCCCACCACGACAACAGAAGAGTAGTAGAGACAAGTCACCACCACTCGCACGCTCTCTTTGAC
GCCCCCATCCGCGTTTTCGCGCCGTTTCACCGGGGGCCGCCCGAGGTAGACGTTCTCTCCACATA
ATTTTTCACATTGTCATAATTCCACGTGACAGCACGAACCCAGATTAAATAAAACCTTCCCTTGT
CGCTGAAGCGATCCAAATCAGAGACAAAATTATGCCATCGAGTAAGTACCGTTGCCTGGGATGTT
TGGGCCGCGGCGATTGAGCCCGCCCGTGGTGTTGGGTGTGGGCCGTGGGTGGAGCCACACTTTGT
TTTTCCCCGGATTCCAAGGGGGGACCCTTAGCCAATCGCGGCCGTGGGGAAGCCAATGGTGGGGC
TGGCGCGAGGCTGGTTTGGAGATGGTTGCCAGAGGAGTGGTGGTA
Right flanking sequence: Indices 130600 -- 131099
TTGGACCACGGGACCCTCCGTGACCGTTGAAAGGAGGGGAGTGTCAAGTGAAAAATGTACTAAAA
ACACTCAAACAACACACCCACCAAAACGCCCCGACACACCCGCCAAAACACCCCAACAAACCACC
TGTGCCCTACTAACCTCTAGTTGGTTCCATTTTTGTCACCTCTGACGCCAAAGGGGTGCCGTCAA
AGTACGGCGACGGCACCGTCCTCGTGGCGAGCAACGACCCCGTGGCTGCCGTGGGCGAGTTCCTC
GACACCCGCGACGACGACGACTTCGTCACCTTATACACCGATCTGACCACTTTGGTGTCGCAGAT
CCCGCTTTTGACCCGGACCGCGCTCAAAACCGCGCGGTTGGTGGTGCATGCTGAGATTGTCGACG
GCGACTACGGCGCGGTGACTGCTCTCCGCGACTTGGGCTCGCCCGTGGTGGTCTCTGGCGCCAAG
TCCGGCGCCAAGGTCGCCTCGTTGGCCTACAACTTGGCTGGCAAG
Found at i:130702 original size:22 final size:22
Alignment explanation
Indices: 130676--130718 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
130666 CACTCAAACA
*
130676 ACACACCCACCAAAACGCCCCG
1 ACACACCCACCAAAACACCCCG
*
130698 ACACACCCGCCAAAACACCCC
1 ACACACCCACCAAAACACCCC
130719 AACAAACCAC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.37, C:0.56, G:0.07, T:0.00
Consensus pattern (22 bp):
ACACACCCACCAAAACACCCCG
Left flanking sequence: Indices 130176 -- 130675
TCGCACGCTCTCTTTGACGCCCCCATCCGCGTTTTCGCGCCGTTTCACCGGGGGCCGCCCGAGGT
AGACGTTCTCTCCACATAATTTTTCACATTGTCATAATTCCACGTGACAGCACGAACCCAGATTA
AATAAAACCTTCCCTTGTCGCTGAAGCGATCCAAATCAGAGACAAAATTATGCCATCGAGTAAGT
ACCGTTGCCTGGGATGTTTGGGCCGCGGCGATTGAGCCCGCCCGTGGTGTTGGGTGTGGGCCGTG
GGTGGAGCCACACTTTGTTTTTCCCCGGATTCCAAGGGGGGACCCTTAGCCAATCGCGGCCGTGG
GGAAGCCAATGGTGGGGCTGGCGCGAGGCTGGTTTGGAGATGGTTGCCAGAGGAGTGGTGGTACC
GTGCCTGCTGCTCCGTGCCTACTGCTCCGTGCCTTTGGACCACGGGACCCTCCGTGACCGTTGAA
AGGAGGGGAGTGTCAAGTGAAAAATGTACTAAAAACACTCAAACA
Right flanking sequence: Indices 130719 -- 131218
AACAAACCACCTGTGCCCTACTAACCTCTAGTTGGTTCCATTTTTGTCACCTCTGACGCCAAAGG
GGTGCCGTCAAAGTACGGCGACGGCACCGTCCTCGTGGCGAGCAACGACCCCGTGGCTGCCGTGG
GCGAGTTCCTCGACACCCGCGACGACGACGACTTCGTCACCTTATACACCGATCTGACCACTTTG
GTGTCGCAGATCCCGCTTTTGACCCGGACCGCGCTCAAAACCGCGCGGTTGGTGGTGCATGCTGA
GATTGTCGACGGCGACTACGGCGCGGTGACTGCTCTCCGCGACTTGGGCTCGCCCGTGGTGGTCT
CTGGCGCCAAGTCCGGCGCCAAGGTCGCCTCGTTGGCCTACAACTTGGCTGGCAAGCTTGCGCAG
CCGGTGTACCACTTTTATCCCGAGTTCGAATCCCAGTTCACCCCAGAAATTTTACTGGATGTCAC
CGAGTTGGAGGTCAACGACATCGCTGCCAAGGTCGAGGTGGCTCC
Found at i:133919 original size:18 final size:18
Alignment explanation
Indices: 133885--133919 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
133875 GTCAACGACG
*
133885 ACAACGTGGTGGAGGGCT
1 ACAACGTGATGGAGGGCT
*
133903 ACAACGTGATGGTGGGC
1 ACAACGTGATGGAGGGC
133920 GGTGGTATGG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.23, C:0.17, G:0.43, T:0.17
Consensus pattern (18 bp):
ACAACGTGATGGAGGGCT
Left flanking sequence: Indices 133385 -- 133884
GGACACCCGTGGTAACGGGACGCTCAAGGTCACCACCAGAGCCACGTTCCAGCTCCACGGGGTGG
TCAAGCACGACCTCAAGCCCGCTATTCGTGGTATGAACTCTGCGTTGATGGACACCTTGGCTGCC
TGTGGTGACGTCAACCGTAACGTGATGTTGCTGGCGCTTCCCCACAACAAGAAGGTGCACAGCCA
AGTGTCTGCCGACGGCACGTTGATCTCGGAGTACCTCTTGCCCAAGACCACTGCCTACCACGAGA
TCTGGCTCGAGGGCCCCGACCCGTCCGACAAGCCGGGCGACCGCGAGGCGTGGGAGAACCGCAAG
GAGGGCCCCACCAAGAAGAAGACGTTGGTGGCGGGCAACTCGCTTGTGGACTACGAGCCCATGTA
CGGCGAGTTGTACCTCCCCCGTAAGTTCAAGATCTCGATCACCGTGCCTCCCTACAACGACGTGG
ACGTGTGGGCACACGACATTGGTCTTGTGGCGATTGTCAACGACG
Right flanking sequence: Indices 133920 -- 134419
GGTGGTATGGGTACCACCCACAACAACAAGAAGACCTACCCCCGTCTTGGGTCCCACTTTGGCTT
TGTGCCCCGTGACAAGATCCACATTGCCTGTGAGAAGATCATGTTGGTGCAGAGAGACTTTGGTG
ACCGTACCAACCGTAAGCACGCCCGGTTAAAGTACACCATCGACGACTTGGGTCCCGATGTGTAC
AAGGCCAAGGTGGAGGAGCGTCTCGGGTTTGCGTTTGAGCCCGAGAGACCGTTTGAGATCACCTC
CAACGTCGACTTCTTTGGCTGGTGCAAGGACGAGGAGGGGTACAACCACTTCACCTGTTTCATTG
AGAACGGGAGAGTCGAGGACACCCCCGCGTTGCCCCAGAAGACCGGGTTGAAGCTTGTGGCCGAG
TATCTCCGCGACAAGGCCAAGTCTGGTGAGTTCCGTCTTACCGGTAACCAGCACTTGGTGATCTC
CAACATCGACGACGCGGACTTGGACTACGTCAAGGGCCTTCTCAA
Found at i:135280 original size:21 final size:19
Alignment explanation
Indices: 135240--135278 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
135230 GGTGGTCTCA
*
135240 GGCCATCGTGTGGTTTTGT
1 GGCCATCGCGTGGTTTTGT
135259 GGCCATCGCGTGGTTTTGT
1 GGCCATCGCGTGGTTTTGT
135278 G
1 G
135279 TGCTTCCATG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.05, C:0.18, G:0.38, T:0.38
Consensus pattern (19 bp):
GGCCATCGCGTGGTTTTGT
Left flanking sequence: Indices 134740 -- 135239
TCAAGGAGGACGAGATCTTGGAGATCTTGTCCGACTTGTTCCAGAAGTGGTCCAAGGAGCGCAAC
GACGGCGAGCCGTTTGGTGACTGGGTCATCCGCGCCGGGGTGATCAAGCCCACGTTGGAGGGTAA
GTACTTCCACGACGACATTCCCGAAGACGCTTGAGCATATAGTAGTTTGTTTTTTAATAGATAGA
GAAGAAAGAATAAGAATGTAATTAGTGTATTAAGAGGTTAAGTCAAGGTGTGTCTTCGATTTTTA
AAAATACGTTTCTATACTAAGGGTAAACTGTGTAATGAATTTAGATTTAAATGTCGTCAATGAAT
TTTTATGATGAATCGGTCACATTTATGGTTGGTACCTAGTATAGTATTTTTCTTTTCATCTCGTG
TTTCTATGAAAGAGCATTTGGAAAATGCAAAAATACTAGCTACGTCTTCTATCTCTATTTCATCA
TCTTTTAATGTAGTTTCATTTTGAATTCTCACGCGGGTGGTCTCA
Right flanking sequence: Indices 135279 -- 135778
TGCTTCCATGCCTCGGTTAGACCATCTCGAAGGTCGAACGGCTTTGTAACACGATGACTCGATGA
CTCAAGTGGTCTGATAACTACATCAGACCTACATCAGGGACGAGATAAAAGTTAGCCAGCCGAAG
CTGTGATAATAAAGCCTGGTCAAGCAATAGAGGAACTAGTCGACTAACACCAGCAATCTTTCCTT
CTCACCATCTTTTCTTCTCACCATCTTTCCTTCTCTCACACCCATCTTACCTTCTCACCATCTTA
CCATCTCTCACACCTTCCCTTCATCCTACACTTTTCTTCGAATACGGCTTTGTATTAAAAACAGT
CTATAAATCAATCCTTTACCCTGGGACACCCCAGTCAATTAAGCAACTCGCAAATGGAGTGGCCA
CACCACCCCAACACCTTCTCAAACACCATCGACTCCCGGGCCAACACCTGGTACGACGGGTTCAA
CGCCTCAGCCTGCGCACTGTCGCTCACAGAAGCAACCTTGGTGTG
Found at i:135520 original size:37 final size:37
Alignment explanation
Indices: 135478--135552 Score: 114
Period size: 37 Copynumber: 2.0 Consensus size: 37
135468 TTCCTTCTCA
** * *
135478 CCATCTTTTCTTCTCACCATCTTTCCTTCTCTCACAC
1 CCATCTTACCTTCTCACCATCTTACCATCTCTCACAC
135515 CCATCTTACCTTCTCACCATCTTACCATCTCTCACAC
1 CCATCTTACCTTCTCACCATCTTACCATCTCTCACAC
135552 C
1 C
135553 TTCCCTTCAT
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
37 34 1.00
ACGTcount: A:0.17, C:0.45, G:0.00, T:0.37
Consensus pattern (37 bp):
CCATCTTACCTTCTCACCATCTTACCATCTCTCACAC
Left flanking sequence: Indices 134978 -- 135477
CAAGGTGTGTCTTCGATTTTTAAAAATACGTTTCTATACTAAGGGTAAACTGTGTAATGAATTTA
GATTTAAATGTCGTCAATGAATTTTTATGATGAATCGGTCACATTTATGGTTGGTACCTAGTATA
GTATTTTTCTTTTCATCTCGTGTTTCTATGAAAGAGCATTTGGAAAATGCAAAAATACTAGCTAC
GTCTTCTATCTCTATTTCATCATCTTTTAATGTAGTTTCATTTTGAATTCTCACGCGGGTGGTCT
CAGGCCATCGTGTGGTTTTGTGGCCATCGCGTGGTTTTGTGTGCTTCCATGCCTCGGTTAGACCA
TCTCGAAGGTCGAACGGCTTTGTAACACGATGACTCGATGACTCAAGTGGTCTGATAACTACATC
AGACCTACATCAGGGACGAGATAAAAGTTAGCCAGCCGAAGCTGTGATAATAAAGCCTGGTCAAG
CAATAGAGGAACTAGTCGACTAACACCAGCAATCTTTCCTTCTCA
Right flanking sequence: Indices 135553 -- 136052
TTCCCTTCATCCTACACTTTTCTTCGAATACGGCTTTGTATTAAAAACAGTCTATAAATCAATCC
TTTACCCTGGGACACCCCAGTCAATTAAGCAACTCGCAAATGGAGTGGCCACACCACCCCAACAC
CTTCTCAAACACCATCGACTCCCGGGCCAACACCTGGTACGACGGGTTCAACGCCTCAGCCTGCG
CACTGTCGCTCACAGAAGCAACCTTGGTGTGCTGAGGTATTGTCATTGGTAACACAAACGTCATG
TCAAATTGACCAGCAACTGAAGCTGTGGAAATCTCTTCGCAATTCTTGGTGTCTCTAGCCTACCC
GTAGTGCTCTTTTATCGTTCCAGGGACGGTCCACACCTCGCCGCAGCCGGCGTGGTGTCACCCTC
GATAACATGATTCCTGCGGACATCGAATCTCCGAAGGCGATGATCACCAGTTAGAAACGAGAACG
ACGCCAGATAGGGCTTACCACGTGTACAGTGAGCCCACTGGAGTC
Found at i:135540 original size:16 final size:16
Alignment explanation
Indices: 135464--135537 Score: 85
Period size: 16 Copynumber: 4.3 Consensus size: 16
135454 AACACCAGCA
135464 ATCTTTCCTTCTCACC
1 ATCTTTCCTTCTCACC
*
135480 ATCTTTTCTTCTCACC
1 ATCTTTCCTTCTCACC
135496 ATCTTTCCTTCTCTCACACCC
1 ATCTTTCC-T-TCT--CA-CC
*
135517 ATCTTACCTTCTCACC
1 ATCTTTCCTTCTCACC
135533 ATCTT
1 ATCTT
135538 ACCATCTCTC
Statistics
Matches: 50, Mismatches: 3, Indels: 10
0.79 0.05 0.16
Matches are distributed among these distances:
16 29 0.58
17 3 0.06
18 3 0.06
19 3 0.06
20 3 0.06
21 9 0.18
ACGTcount: A:0.15, C:0.42, G:0.00, T:0.43
Consensus pattern (16 bp):
ATCTTTCCTTCTCACC
Left flanking sequence: Indices 134964 -- 135463
TTAAGAGGTTAAGTCAAGGTGTGTCTTCGATTTTTAAAAATACGTTTCTATACTAAGGGTAAACT
GTGTAATGAATTTAGATTTAAATGTCGTCAATGAATTTTTATGATGAATCGGTCACATTTATGGT
TGGTACCTAGTATAGTATTTTTCTTTTCATCTCGTGTTTCTATGAAAGAGCATTTGGAAAATGCA
AAAATACTAGCTACGTCTTCTATCTCTATTTCATCATCTTTTAATGTAGTTTCATTTTGAATTCT
CACGCGGGTGGTCTCAGGCCATCGTGTGGTTTTGTGGCCATCGCGTGGTTTTGTGTGCTTCCATG
CCTCGGTTAGACCATCTCGAAGGTCGAACGGCTTTGTAACACGATGACTCGATGACTCAAGTGGT
CTGATAACTACATCAGACCTACATCAGGGACGAGATAAAAGTTAGCCAGCCGAAGCTGTGATAAT
AAAGCCTGGTCAAGCAATAGAGGAACTAGTCGACTAACACCAGCA
Right flanking sequence: Indices 135538 -- 136037
ACCATCTCTCACACCTTCCCTTCATCCTACACTTTTCTTCGAATACGGCTTTGTATTAAAAACAG
TCTATAAATCAATCCTTTACCCTGGGACACCCCAGTCAATTAAGCAACTCGCAAATGGAGTGGCC
ACACCACCCCAACACCTTCTCAAACACCATCGACTCCCGGGCCAACACCTGGTACGACGGGTTCA
ACGCCTCAGCCTGCGCACTGTCGCTCACAGAAGCAACCTTGGTGTGCTGAGGTATTGTCATTGGT
AACACAAACGTCATGTCAAATTGACCAGCAACTGAAGCTGTGGAAATCTCTTCGCAATTCTTGGT
GTCTCTAGCCTACCCGTAGTGCTCTTTTATCGTTCCAGGGACGGTCCACACCTCGCCGCAGCCGG
CGTGGTGTCACCCTCGATAACATGATTCCTGCGGACATCGAATCTCCGAAGGCGATGATCACCAG
TTAGAAACGAGAACGACGCCAGATAGGGCTTACCACGTGTACAGT
Found at i:135545 original size:16 final size:16
Alignment explanation
Indices: 135515--135545 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
135505 TCTCTCACAC
*
135515 CCATCTTACCTTCTCA
1 CCATCTTACCATCTCA
135531 CCATCTTACCATCTC
1 CCATCTTACCATCTC
135546 TCACACCTTC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.19, C:0.45, G:0.00, T:0.35
Consensus pattern (16 bp):
CCATCTTACCATCTCA
Left flanking sequence: Indices 135015 -- 135514
ACTAAGGGTAAACTGTGTAATGAATTTAGATTTAAATGTCGTCAATGAATTTTTATGATGAATCG
GTCACATTTATGGTTGGTACCTAGTATAGTATTTTTCTTTTCATCTCGTGTTTCTATGAAAGAGC
ATTTGGAAAATGCAAAAATACTAGCTACGTCTTCTATCTCTATTTCATCATCTTTTAATGTAGTT
TCATTTTGAATTCTCACGCGGGTGGTCTCAGGCCATCGTGTGGTTTTGTGGCCATCGCGTGGTTT
TGTGTGCTTCCATGCCTCGGTTAGACCATCTCGAAGGTCGAACGGCTTTGTAACACGATGACTCG
ATGACTCAAGTGGTCTGATAACTACATCAGACCTACATCAGGGACGAGATAAAAGTTAGCCAGCC
GAAGCTGTGATAATAAAGCCTGGTCAAGCAATAGAGGAACTAGTCGACTAACACCAGCAATCTTT
CCTTCTCACCATCTTTTCTTCTCACCATCTTTCCTTCTCTCACAC
Right flanking sequence: Indices 135546 -- 136045
TCACACCTTCCCTTCATCCTACACTTTTCTTCGAATACGGCTTTGTATTAAAAACAGTCTATAAA
TCAATCCTTTACCCTGGGACACCCCAGTCAATTAAGCAACTCGCAAATGGAGTGGCCACACCACC
CCAACACCTTCTCAAACACCATCGACTCCCGGGCCAACACCTGGTACGACGGGTTCAACGCCTCA
GCCTGCGCACTGTCGCTCACAGAAGCAACCTTGGTGTGCTGAGGTATTGTCATTGGTAACACAAA
CGTCATGTCAAATTGACCAGCAACTGAAGCTGTGGAAATCTCTTCGCAATTCTTGGTGTCTCTAG
CCTACCCGTAGTGCTCTTTTATCGTTCCAGGGACGGTCCACACCTCGCCGCAGCCGGCGTGGTGT
CACCCTCGATAACATGATTCCTGCGGACATCGAATCTCCGAAGGCGATGATCACCAGTTAGAAAC
GAGAACGACGCCAGATAGGGCTTACCACGTGTACAGTGAGCCCAC
Done.