Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: scaffold55
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 108205
ACGTcount: A:0.22, C:0.29, G:0.28, T:0.21
Warning! 1 characters in sequence are not A, C, G, or T
File 1 of 2
Found at i:21 original size:6 final size:6
Alignment explanation
Indices: 10--99 Score: 99
Period size: 6 Copynumber: 14.0 Consensus size: 6
1 GTTTTCGGT
10 GTGTTG GTGTTGG TGTGTTG GTGTTG GTGTTG GTGTTGG TGTGTTG GTGTTGG
1 GTGTTG GTGTT-G -GTGTTG GTGTTG GTGTTG GTGTT-G -GTGTTG GTGTT-G
* * *
63 TGTGTTG GTGTTG GTGTTG TTGTTG TTGTTG TTGTTG
1 -GTGTTG GTGTTG GTGTTG GTGTTG GTGTTG GTGTTG
100 CTGGTCGCTG
Statistics
Matches: 77, Mismatches: 1, Indels: 12
0.86 0.01 0.13
Matches are distributed among these distances:
6 56 0.73
7 6 0.08
8 15 0.19
ACGTcount: A:0.00, C:0.00, G:0.47, T:0.53
Consensus pattern (6 bp):
GTGTTG
Left flanking sequence: Indices 1 -- 9
GTTTTCGGT
Right flanking sequence: Indices 100 -- 599
CTGGTCGCTGTTGAAGGGTTGGATGCCAATGGCTCCTTTTCCCCCTGTTGGTGGTGTCAGTGGTA
CTCGATTCGATTCGTTGGATCGGGTGCCATTGGCACCGTTTTTTCCCCCTGTTGGTGGTGCCATT
GGCATCCAATCCGGGTTTCTATAATTGTATAGTTAAGCACTGGGTGCGCCTTCGGGGTAGCCTGC
ATGAGCGGGCTACCCTGAAGCCGTACTAGGGGCTTATATTGTAGTATATAGATATATACAGGTTC
GCCATAATCAACGCTATCTACGGTATCAACAGTAAAGTCACGTGACAATTATCACATGTGTTCTG
TCGTCGTATAGTCCCGTCGTATAGATTAAGGTGAGGGGACCGTTCTATCCTCAAACAAAATACAT
TATGTAATACTGATTTAGAAAGTAATAGTCACGTGGTCGGAGTCACATGCTTCACCAATTGGTTG
ACTGAGCTCGTATGTAATGTTCGTAAAGTCTTAGCGATTTTTGAA
Found at i:26 original size:14 final size:14
Alignment explanation
Indices: 7--90 Score: 136
Period size: 14 Copynumber: 6.1 Consensus size: 14
1 GTTTTC
7 GGTGTGTTGGTGTT
1 GGTGTGTTGGTGTT
21 GGTGTGTTGGTGTT
1 GGTGTGTTGGTGTT
35 -G-GTGTTGGTGTT
1 GGTGTGTTGGTGTT
47 GGTGTGTTGGTGTT
1 GGTGTGTTGGTGTT
61 GGTGTGTTGGTGTT
1 GGTGTGTTGGTGTT
*
75 GGTGTTGTTGTTGTT
1 GGTG-TGTTGGTGTT
90 G
1 G
91 TTGTTGTTGC
Statistics
Matches: 66, Mismatches: 1, Indels: 5
0.92 0.01 0.07
Matches are distributed among these distances:
12 11 0.17
13 2 0.03
14 43 0.65
15 10 0.15
ACGTcount: A:0.00, C:0.00, G:0.49, T:0.51
Consensus pattern (14 bp):
GGTGTGTTGGTGTT
Left flanking sequence: Indices 1 -- 6
GTTTTC
Right flanking sequence: Indices 91 -- 590
TTGTTGTTGCTGGTCGCTGTTGAAGGGTTGGATGCCAATGGCTCCTTTTCCCCCTGTTGGTGGTG
TCAGTGGTACTCGATTCGATTCGTTGGATCGGGTGCCATTGGCACCGTTTTTTCCCCCTGTTGGT
GGTGCCATTGGCATCCAATCCGGGTTTCTATAATTGTATAGTTAAGCACTGGGTGCGCCTTCGGG
GTAGCCTGCATGAGCGGGCTACCCTGAAGCCGTACTAGGGGCTTATATTGTAGTATATAGATATA
TACAGGTTCGCCATAATCAACGCTATCTACGGTATCAACAGTAAAGTCACGTGACAATTATCACA
TGTGTTCTGTCGTCGTATAGTCCCGTCGTATAGATTAAGGTGAGGGGACCGTTCTATCCTCAAAC
AAAATACATTATGTAATACTGATTTAGAAAGTAATAGTCACGTGGTCGGAGTCACATGCTTCACC
AATTGGTTGACTGAGCTCGTATGTAATGTTCGTAAAGTCTTAGCG
Found at i:35 original size:20 final size:20
Alignment explanation
Indices: 10--99 Score: 123
Period size: 20 Copynumber: 4.6 Consensus size: 20
1 GTTTTCGGT
10 GTGTTGGTGTTGGTGTGTTG
1 GTGTTGGTGTTGGTGTGTTG
*
30 GTGTTGGTGTTGGTGT-TGG
1 GTGTTGGTGTTGGTGTGTTG
49 TGTGTTGGTGTTGGTGTGTTG
1 -GTGTTGGTGTTGGTGTGTTG
70 GTGTTGGTGTT-GT-TGTTG
1 GTGTTGGTGTTGGTGTGTTG
* *
88 TTGTTGTTGTTG
1 GTGTTGGTGTTG
100 CTGGTCGCTG
Statistics
Matches: 63, Mismatches: 4, Indels: 7
0.85 0.05 0.09
Matches are distributed among these distances:
18 14 0.22
19 4 0.06
20 43 0.68
21 2 0.03
ACGTcount: A:0.00, C:0.00, G:0.47, T:0.53
Consensus pattern (20 bp):
GTGTTGGTGTTGGTGTGTTG
Left flanking sequence: Indices 1 -- 9
GTTTTCGGT
Right flanking sequence: Indices 100 -- 599
CTGGTCGCTGTTGAAGGGTTGGATGCCAATGGCTCCTTTTCCCCCTGTTGGTGGTGTCAGTGGTA
CTCGATTCGATTCGTTGGATCGGGTGCCATTGGCACCGTTTTTTCCCCCTGTTGGTGGTGCCATT
GGCATCCAATCCGGGTTTCTATAATTGTATAGTTAAGCACTGGGTGCGCCTTCGGGGTAGCCTGC
ATGAGCGGGCTACCCTGAAGCCGTACTAGGGGCTTATATTGTAGTATATAGATATATACAGGTTC
GCCATAATCAACGCTATCTACGGTATCAACAGTAAAGTCACGTGACAATTATCACATGTGTTCTG
TCGTCGTATAGTCCCGTCGTATAGATTAAGGTGAGGGGACCGTTCTATCCTCAAACAAAATACAT
TATGTAATACTGATTTAGAAAGTAATAGTCACGTGGTCGGAGTCACATGCTTCACCAATTGGTTG
ACTGAGCTCGTATGTAATGTTCGTAAAGTCTTAGCGATTTTTGAA
Found at i:62 original size:40 final size:40
Alignment explanation
Indices: 7--99 Score: 154
Period size: 40 Copynumber: 2.4 Consensus size: 40
1 GTTTTC
7 GGTGTGTTGGTGTTGGTGTGTTGGTGTTGGTGTTGGTGTT
1 GGTGTGTTGGTGTTGGTGTGTTGGTGTTGGTGTTGGTGTT
*
47 GGTGTGTTGGTGTTGGTGTGTTGGTGTTGGTGTTGTTGTT
1 GGTGTGTTGGTGTTGGTGTGTTGGTGTTGGTGTTGGTGTT
*
87 -GT-TGTTGTTGTTG
1 GGTGTGTTGGTGTTG
100 CTGGTCGCTG
Statistics
Matches: 51, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
38 10 0.20
39 2 0.04
40 39 0.76
ACGTcount: A:0.00, C:0.00, G:0.47, T:0.53
Consensus pattern (40 bp):
GGTGTGTTGGTGTTGGTGTGTTGGTGTTGGTGTTGGTGTT
Left flanking sequence: Indices 1 -- 6
GTTTTC
Right flanking sequence: Indices 100 -- 599
CTGGTCGCTGTTGAAGGGTTGGATGCCAATGGCTCCTTTTCCCCCTGTTGGTGGTGTCAGTGGTA
CTCGATTCGATTCGTTGGATCGGGTGCCATTGGCACCGTTTTTTCCCCCTGTTGGTGGTGCCATT
GGCATCCAATCCGGGTTTCTATAATTGTATAGTTAAGCACTGGGTGCGCCTTCGGGGTAGCCTGC
ATGAGCGGGCTACCCTGAAGCCGTACTAGGGGCTTATATTGTAGTATATAGATATATACAGGTTC
GCCATAATCAACGCTATCTACGGTATCAACAGTAAAGTCACGTGACAATTATCACATGTGTTCTG
TCGTCGTATAGTCCCGTCGTATAGATTAAGGTGAGGGGACCGTTCTATCCTCAAACAAAATACAT
TATGTAATACTGATTTAGAAAGTAATAGTCACGTGGTCGGAGTCACATGCTTCACCAATTGGTTG
ACTGAGCTCGTATGTAATGTTCGTAAAGTCTTAGCGATTTTTGAA
Found at i:2314 original size:145 final size:146
Alignment explanation
Indices: 2114--2385 Score: 465
Period size: 145 Copynumber: 1.9 Consensus size: 146
2104 TTCAAAGAAG
* * *
2114 TACATGCCTTCCCCTACACTCCAGGGCTGAAGTAAAGCATGTCTGTACGAATACACGCCATCCGC
1 TACACGCCTTCCCCTACACTCCAGGCCTGAAGAAAAGCATGTCTGTACGAATACACGCCATCCGC
*
2179 TGCGCTTCAGGCCCCT-AAAATCGCTTGTTCACCCAAATACACGCCTTCGCTGCGCCTAAAGTAA
66 TGCGCTTCAGGCCCCTAAAAATCGCTTGTTCACCCAAATACACGCCTTCCCTGCGCCTAAAGTAA
2243 AGCTTGTCTGTACAAA
131 AGCTTGTCTGTACAAA
* *
2259 TACACGCCTTCCGCTGCACTCCAGGCCTGAAGAAAAGCATGTCTGTACGAATACACGCCATCCGC
1 TACACGCCTTCCCCTACACTCCAGGCCTGAAGAAAAGCATGTCTGTACGAATACACGCCATCCGC
**
2324 TGCGCTTCAGGCCCCTAAAAATCGCTTGTTCATTCAAATACACGCCTTCCCTGCGCCTAAAG
66 TGCGCTTCAGGCCCCTAAAAATCGCTTGTTCACCCAAATACACGCCTTCCCTGCGCCTAAAG
2386 CAAGAACTGT
Statistics
Matches: 118, Mismatches: 8, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
145 76 0.64
146 42 0.36
ACGTcount: A:0.26, C:0.33, G:0.18, T:0.23
Consensus pattern (146 bp):
TACACGCCTTCCCCTACACTCCAGGCCTGAAGAAAAGCATGTCTGTACGAATACACGCCATCCGC
TGCGCTTCAGGCCCCTAAAAATCGCTTGTTCACCCAAATACACGCCTTCCCTGCGCCTAAAGTAA
AGCTTGTCTGTACAAA
Left flanking sequence: Indices 1614 -- 2113
GGATGGGCCAGGTTTGTATGGCGGTGTATGAATGCTCCCAATTAAAAGGCTGCTGTCGTTGAAAC
ACCTGCTGTAGGTATACTGGGGTTGCTTCAGTTCCCCGTAACACGGTTGAGTATCGTCTTGTCGT
AGTGAAGATTGTAAAATTCCCCACCCATTGCCATTGGATTGGGTGTTACAGGAATTCAAAGAGTA
TGGCTCGTAAATACACCCAGTTGCTTTGTTGGTTTCTAAAGTTCTTGGTATAGAAAACACCCCAG
CTCTCAAATGGTGGATCTTATCACCGCTTGAACTAGCTTTTGCAATCGTGTACAAATTCGCCTGT
TTGCGATGCTCCAGGCCGCAAGATGGTCGTACAAACCACTGTGCCTTTGCTTCTAGCCACTAAAC
TGCTTTGTGCTTGTACATTTTCACTGCTCCCTAGACACAAGTAACGTAAATCGTTCAAATACACA
CCTTCAGCTGCGCTTCAGGCCTCCATAATCGTTTCTTCAAAGAAG
Right flanking sequence: Indices 2386 -- 2885
CAAGAACTGTTTCCTCAAATCCACGCGCTCCACGCCTAAAGAAAGATCTGTTTCCTCAAATACAA
GCCTTCGCTGCGCTTCAGGCCTCTAAATCGTTTGTTCACTCAAATACACGCCTTCCGCTGCGCTC
CAGGCCACCAACCCTGCTAGTTCGCGGCAGTTCGCGGCAGTTCGCTTCGCTCACCGCCGCTCACC
GCCGCTCCTCACTCTCTAGTGTACATTAAACAATACAAACATAATAAAACAATTCATCAAGAAGC
TACAATACAAGGCATTATCTGCGGCCATAGCGCATGCCGTGGGCGTGGTCGTGCGCCTGGACGCT
CGGATCCACATTAGGGTCAATATTAGGGTCCACGGGCCCCAAGTGCGCCGGGCCCGTCGCCTCCA
TCGCCGCGGCAATCATCGCCTCGGGCACCTGCTGGCCGTCGTCGTGGTGCAAGTGCATCTGGTGG
TGCATCGCCAGGTTCTGGGCAATGTTGTGCAACGCCTCGGGCATG
Found at i:2317 original size:51 final size:51
Alignment explanation
Indices: 2232--2336 Score: 147
Period size: 51 Copynumber: 2.1 Consensus size: 51
2222 CCTTCGCTGC
* * *
2232 GCCTAAAGTAAAGCTTGTCTGTACAAATACACGCCTTCCGCTGCACTCCAG
1 GCCTAAAGAAAAGCATGTCTGTACAAATACACGCCATCCGCTGCACTCCAG
* * * *
2283 GCCTGAAGAAAAGCATGTCTGTACGAATACACGCCATCCGCTGCGCTTCAG
1 GCCTAAAGAAAAGCATGTCTGTACAAATACACGCCATCCGCTGCACTCCAG
2334 GCC
1 GCC
2337 CCTAAAAATC
Statistics
Matches: 47, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
51 47 1.00
ACGTcount: A:0.27, C:0.31, G:0.21, T:0.21
Consensus pattern (51 bp):
GCCTAAAGAAAAGCATGTCTGTACAAATACACGCCATCCGCTGCACTCCAG
Left flanking sequence: Indices 1732 -- 2231
TCGTCTTGTCGTAGTGAAGATTGTAAAATTCCCCACCCATTGCCATTGGATTGGGTGTTACAGGA
ATTCAAAGAGTATGGCTCGTAAATACACCCAGTTGCTTTGTTGGTTTCTAAAGTTCTTGGTATAG
AAAACACCCCAGCTCTCAAATGGTGGATCTTATCACCGCTTGAACTAGCTTTTGCAATCGTGTAC
AAATTCGCCTGTTTGCGATGCTCCAGGCCGCAAGATGGTCGTACAAACCACTGTGCCTTTGCTTC
TAGCCACTAAACTGCTTTGTGCTTGTACATTTTCACTGCTCCCTAGACACAAGTAACGTAAATCG
TTCAAATACACACCTTCAGCTGCGCTTCAGGCCTCCATAATCGTTTCTTCAAAGAAGTACATGCC
TTCCCCTACACTCCAGGGCTGAAGTAAAGCATGTCTGTACGAATACACGCCATCCGCTGCGCTTC
AGGCCCCTAAAATCGCTTGTTCACCCAAATACACGCCTTCGCTGC
Right flanking sequence: Indices 2337 -- 2836
CCTAAAAATCGCTTGTTCATTCAAATACACGCCTTCCCTGCGCCTAAAGCAAGAACTGTTTCCTC
AAATCCACGCGCTCCACGCCTAAAGAAAGATCTGTTTCCTCAAATACAAGCCTTCGCTGCGCTTC
AGGCCTCTAAATCGTTTGTTCACTCAAATACACGCCTTCCGCTGCGCTCCAGGCCACCAACCCTG
CTAGTTCGCGGCAGTTCGCGGCAGTTCGCTTCGCTCACCGCCGCTCACCGCCGCTCCTCACTCTC
TAGTGTACATTAAACAATACAAACATAATAAAACAATTCATCAAGAAGCTACAATACAAGGCATT
ATCTGCGGCCATAGCGCATGCCGTGGGCGTGGTCGTGCGCCTGGACGCTCGGATCCACATTAGGG
TCAATATTAGGGTCCACGGGCCCCAAGTGCGCCGGGCCCGTCGCCTCCATCGCCGCGGCAATCAT
CGCCTCGGGCACCTGCTGGCCGTCGTCGTGGTGCAAGTGCATCTG
Found at i:2405 original size:43 final size:43
Alignment explanation
Indices: 2357--2463 Score: 130
Period size: 41 Copynumber: 2.5 Consensus size: 43
2347 GCTTGTTCAT
*
2357 TCAAATACACGCCTTCCCTGCGCCTAAAGCAAGAACTGTTTCC
1 TCAAATACACGCCTTCCCTGCGCCTAAAGAAAGAACTGTTTCC
* * *
2400 TCAAATCCACGCGC-T-CC-ACGCCTAAAGAAAGATCTGTTTCC
1 TCAAATACACGC-CTTCCCTGCGCCTAAAGAAAGAACTGTTTCC
* *
2441 TCAAATACAAGCCTTCGCTGCGC
1 TCAAATACACGCCTTCCCTGCGC
2464 TTCAGGCCTC
Statistics
Matches: 52, Mismatches: 8, Indels: 8
0.76 0.12 0.12
Matches are distributed among these distances:
40 1 0.02
41 32 0.62
42 3 0.06
43 15 0.29
44 1 0.02
ACGTcount: A:0.28, C:0.35, G:0.15, T:0.22
Consensus pattern (43 bp):
TCAAATACACGCCTTCCCTGCGCCTAAAGAAAGAACTGTTTCC
Left flanking sequence: Indices 1857 -- 2356
TATAGAAAACACCCCAGCTCTCAAATGGTGGATCTTATCACCGCTTGAACTAGCTTTTGCAATCG
TGTACAAATTCGCCTGTTTGCGATGCTCCAGGCCGCAAGATGGTCGTACAAACCACTGTGCCTTT
GCTTCTAGCCACTAAACTGCTTTGTGCTTGTACATTTTCACTGCTCCCTAGACACAAGTAACGTA
AATCGTTCAAATACACACCTTCAGCTGCGCTTCAGGCCTCCATAATCGTTTCTTCAAAGAAGTAC
ATGCCTTCCCCTACACTCCAGGGCTGAAGTAAAGCATGTCTGTACGAATACACGCCATCCGCTGC
GCTTCAGGCCCCTAAAATCGCTTGTTCACCCAAATACACGCCTTCGCTGCGCCTAAAGTAAAGCT
TGTCTGTACAAATACACGCCTTCCGCTGCACTCCAGGCCTGAAGAAAAGCATGTCTGTACGAATA
CACGCCATCCGCTGCGCTTCAGGCCCCTAAAAATCGCTTGTTCAT
Right flanking sequence: Indices 2464 -- 2963
TTCAGGCCTCTAAATCGTTTGTTCACTCAAATACACGCCTTCCGCTGCGCTCCAGGCCACCAACC
CTGCTAGTTCGCGGCAGTTCGCGGCAGTTCGCTTCGCTCACCGCCGCTCACCGCCGCTCCTCACT
CTCTAGTGTACATTAAACAATACAAACATAATAAAACAATTCATCAAGAAGCTACAATACAAGGC
ATTATCTGCGGCCATAGCGCATGCCGTGGGCGTGGTCGTGCGCCTGGACGCTCGGATCCACATTA
GGGTCAATATTAGGGTCCACGGGCCCCAAGTGCGCCGGGCCCGTCGCCTCCATCGCCGCGGCAAT
CATCGCCTCGGGCACCTGCTGGCCGTCGTCGTGGTGCAAGTGCATCTGGTGGTGCATCGCCAGGT
TCTGGGCAATGTTGTGCAACGCCTCGGGCATGTACCCGTTGGTGGGCGCCTGCGAGGTGCGGTGC
ATCGGCTTCTGCACAAGCGTGCGGTTCTTGGACCGCTTCTTCTTG
Found at i:2549 original size:10 final size:10
Alignment explanation
Indices: 2534--2560 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
2524 CAACCCTGCT
2534 AGTTCGCGGC
1 AGTTCGCGGC
2544 AGTTCGCGGC
1 AGTTCGCGGC
2554 AGTTCGC
1 AGTTCGC
2561 TTCGCTCACC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.11, C:0.30, G:0.37, T:0.22
Consensus pattern (10 bp):
AGTTCGCGGC
Left flanking sequence: Indices 2034 -- 2533
CTAGACACAAGTAACGTAAATCGTTCAAATACACACCTTCAGCTGCGCTTCAGGCCTCCATAATC
GTTTCTTCAAAGAAGTACATGCCTTCCCCTACACTCCAGGGCTGAAGTAAAGCATGTCTGTACGA
ATACACGCCATCCGCTGCGCTTCAGGCCCCTAAAATCGCTTGTTCACCCAAATACACGCCTTCGC
TGCGCCTAAAGTAAAGCTTGTCTGTACAAATACACGCCTTCCGCTGCACTCCAGGCCTGAAGAAA
AGCATGTCTGTACGAATACACGCCATCCGCTGCGCTTCAGGCCCCTAAAAATCGCTTGTTCATTC
AAATACACGCCTTCCCTGCGCCTAAAGCAAGAACTGTTTCCTCAAATCCACGCGCTCCACGCCTA
AAGAAAGATCTGTTTCCTCAAATACAAGCCTTCGCTGCGCTTCAGGCCTCTAAATCGTTTGTTCA
CTCAAATACACGCCTTCCGCTGCGCTCCAGGCCACCAACCCTGCT
Right flanking sequence: Indices 2561 -- 3060
TTCGCTCACCGCCGCTCACCGCCGCTCCTCACTCTCTAGTGTACATTAAACAATACAAACATAAT
AAAACAATTCATCAAGAAGCTACAATACAAGGCATTATCTGCGGCCATAGCGCATGCCGTGGGCG
TGGTCGTGCGCCTGGACGCTCGGATCCACATTAGGGTCAATATTAGGGTCCACGGGCCCCAAGTG
CGCCGGGCCCGTCGCCTCCATCGCCGCGGCAATCATCGCCTCGGGCACCTGCTGGCCGTCGTCGT
GGTGCAAGTGCATCTGGTGGTGCATCGCCAGGTTCTGGGCAATGTTGTGCAACGCCTCGGGCATG
TACCCGTTGGTGGGCGCCTGCGAGGTGCGGTGCATCGGCTTCTGCACAAGCGTGCGGTTCTTGGA
CCGCTTCTTCTTGCCGGTTATCGGCTCGGGCGCGTGGTTGTGCAACGGGTTGATCATCCGCAAAA
TCCACATTTCCAGCCCCCCGAGCTGGTCCCCGAGGTACCCGTCCG
Found at i:2576 original size:10 final size:10
Alignment explanation
Indices: 2563--2587 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
2553 CAGTTCGCTT
2563 CGCTCACCGC
1 CGCTCACCGC
2573 CGCTCACCGC
1 CGCTCACCGC
2583 CGCTC
1 CGCTC
2588 CTCACTCTCT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.08, C:0.60, G:0.20, T:0.12
Consensus pattern (10 bp):
CGCTCACCGC
Left flanking sequence: Indices 2063 -- 2562
TACACACCTTCAGCTGCGCTTCAGGCCTCCATAATCGTTTCTTCAAAGAAGTACATGCCTTCCCC
TACACTCCAGGGCTGAAGTAAAGCATGTCTGTACGAATACACGCCATCCGCTGCGCTTCAGGCCC
CTAAAATCGCTTGTTCACCCAAATACACGCCTTCGCTGCGCCTAAAGTAAAGCTTGTCTGTACAA
ATACACGCCTTCCGCTGCACTCCAGGCCTGAAGAAAAGCATGTCTGTACGAATACACGCCATCCG
CTGCGCTTCAGGCCCCTAAAAATCGCTTGTTCATTCAAATACACGCCTTCCCTGCGCCTAAAGCA
AGAACTGTTTCCTCAAATCCACGCGCTCCACGCCTAAAGAAAGATCTGTTTCCTCAAATACAAGC
CTTCGCTGCGCTTCAGGCCTCTAAATCGTTTGTTCACTCAAATACACGCCTTCCGCTGCGCTCCA
GGCCACCAACCCTGCTAGTTCGCGGCAGTTCGCGGCAGTTCGCTT
Right flanking sequence: Indices 2588 -- 3087
CTCACTCTCTAGTGTACATTAAACAATACAAACATAATAAAACAATTCATCAAGAAGCTACAATA
CAAGGCATTATCTGCGGCCATAGCGCATGCCGTGGGCGTGGTCGTGCGCCTGGACGCTCGGATCC
ACATTAGGGTCAATATTAGGGTCCACGGGCCCCAAGTGCGCCGGGCCCGTCGCCTCCATCGCCGC
GGCAATCATCGCCTCGGGCACCTGCTGGCCGTCGTCGTGGTGCAAGTGCATCTGGTGGTGCATCG
CCAGGTTCTGGGCAATGTTGTGCAACGCCTCGGGCATGTACCCGTTGGTGGGCGCCTGCGAGGTG
CGGTGCATCGGCTTCTGCACAAGCGTGCGGTTCTTGGACCGCTTCTTCTTGCCGGTTATCGGCTC
GGGCGCGTGGTTGTGCAACGGGTTGATCATCCGCAAAATCCACATTTCCAGCCCCCCGAGCTGGT
CCCCGAGGTACCCGTCCGCCAACTTCTGGTCCAAGTTGCGGTCCA
Found at i:3495 original size:18 final size:18
Alignment explanation
Indices: 3474--3512 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
3464 GTGGGGCTGC
* *
3474 TGCTGGTGCATCTGGGGG
1 TGCTGCTGCAACTGGGGG
*
3492 TGCTGCTGCAACTGGTGG
1 TGCTGCTGCAACTGGGGG
3510 TGC
1 TGC
3513 ATCATCAGCT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.08, C:0.21, G:0.44, T:0.28
Consensus pattern (18 bp):
TGCTGCTGCAACTGGGGG
Left flanking sequence: Indices 2974 -- 3473
GCTCGGGCGCGTGGTTGTGCAACGGGTTGATCATCCGCAAAATCCACATTTCCAGCCCCCCGAGC
TGGTCCCCGAGGTACCCGTCCGCCAACTTCTGGTCCAAGTTGCGGTCCATGGGGTCGGGCAGATC
CTTCTTGATCTTCTTCTTGTCCTTCTCCGGCGGGTACAAGTTGGCCACCAACCGGTAGCCACACT
TCAGCCGCTTGGTGTAGGCAACGCGCTGCCGCTTCAGCGGGTCCTTGACGGTGGTGCGGAAGGTG
CCCAGCCGCTCGCACTGGAAGTACACCGCCTTGGGCTTCAGCGAGTTGATGACGATCTTGCACCG
CTCGTCCACCAGCAACGTGCGCTTGACGTAGTCGATCAAGTCGGGCTTGTTGGTGAACGTCTTGA
TGATCTCGTTTTCAATGTACCGCGACTGCAAAATGCCCCCGTCAAACTCGTCCGCCCCCACCTGC
AGGTGGTGCACCATCAGATGCGGCATCTGGTGGTGGTGGGGCTGC
Right flanking sequence: Indices 3513 -- 4012
ATCATCAGCTGCTGGTGGTGCTGCTGCTGGTGGTGCTGCTGGAACTGCAACTGCGACTGGAGCTC
CTGCTGCTGCAATTGCTGCTGGTACCGCTGGCGCTCGGCCCGGTGTTGCAACTCGGTGGCAGCAG
CGGCGGCGGCCGCGGTGTAGCCCCCCTGGTGGTGGAACTGGTTGGCGTCGTCCGGCGGCGCGCCG
TAGGAGACCGCGGCCGCGGCCGTGGCGGTGGCGGACTCGTAGTCGGGCCGCGGCTGCCCGCCGTC
CACGTGGAGATGGTCGTCGTTGGCTCGCTCGTTCAGGGTCAGCATAAATGCAGGTTCCTGTATAG
CTAAGGGTGGTGTATATGGTTTATCGTGGCAATGTTTTTTTTATTTGAGGTGGAGTCGTGTCGCG
GCGAAAAGTTTCCCTGTTCTCATTGGGCAGCATGGTTGCTGGCCCTGGGGGCGGAAAGGTGGGTT
GGTTCGCGGGGGGTTTTTGGGCGCGTGGCGGCGACGGTGTTGGCG
Found at i:3537 original size:12 final size:12
Alignment explanation
Indices: 3520--3554 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
3510 TGCATCATCA
*
3520 GCTGCTGGTGGT
1 GCTGCTGCTGGT
3532 GCTGCTGCTGGT
1 GCTGCTGCTGGT
*
3544 GGTGCTGCTGG
1 GCTGCTGCTGG
3555 AACTGCAACT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.00, C:0.20, G:0.49, T:0.31
Consensus pattern (12 bp):
GCTGCTGCTGGT
Left flanking sequence: Indices 3020 -- 3519
CATTTCCAGCCCCCCGAGCTGGTCCCCGAGGTACCCGTCCGCCAACTTCTGGTCCAAGTTGCGGT
CCATGGGGTCGGGCAGATCCTTCTTGATCTTCTTCTTGTCCTTCTCCGGCGGGTACAAGTTGGCC
ACCAACCGGTAGCCACACTTCAGCCGCTTGGTGTAGGCAACGCGCTGCCGCTTCAGCGGGTCCTT
GACGGTGGTGCGGAAGGTGCCCAGCCGCTCGCACTGGAAGTACACCGCCTTGGGCTTCAGCGAGT
TGATGACGATCTTGCACCGCTCGTCCACCAGCAACGTGCGCTTGACGTAGTCGATCAAGTCGGGC
TTGTTGGTGAACGTCTTGATGATCTCGTTTTCAATGTACCGCGACTGCAAAATGCCCCCGTCAAA
CTCGTCCGCCCCCACCTGCAGGTGGTGCACCATCAGATGCGGCATCTGGTGGTGGTGGGGCTGCT
GCTGGTGCATCTGGGGGTGCTGCTGCAACTGGTGGTGCATCATCA
Right flanking sequence: Indices 3555 -- 4054
AACTGCAACTGCGACTGGAGCTCCTGCTGCTGCAATTGCTGCTGGTACCGCTGGCGCTCGGCCCG
GTGTTGCAACTCGGTGGCAGCAGCGGCGGCGGCCGCGGTGTAGCCCCCCTGGTGGTGGAACTGGT
TGGCGTCGTCCGGCGGCGCGCCGTAGGAGACCGCGGCCGCGGCCGTGGCGGTGGCGGACTCGTAG
TCGGGCCGCGGCTGCCCGCCGTCCACGTGGAGATGGTCGTCGTTGGCTCGCTCGTTCAGGGTCAG
CATAAATGCAGGTTCCTGTATAGCTAAGGGTGGTGTATATGGTTTATCGTGGCAATGTTTTTTTT
ATTTGAGGTGGAGTCGTGTCGCGGCGAAAAGTTTCCCTGTTCTCATTGGGCAGCATGGTTGCTGG
CCCTGGGGGCGGAAAGGTGGGTTGGTTCGCGGGGGGTTTTTGGGCGCGTGGCGGCGACGGTGTTG
GCGGGCTGGGTTAGTGTGCCCGACTGCCGCGGTCCTGTGGGCTAT
Found at i:3540 original size:15 final size:15
Alignment explanation
Indices: 3520--3553 Score: 68
Period size: 15 Copynumber: 2.3 Consensus size: 15
3510 TGCATCATCA
3520 GCTGCTGGTGGTGCT
1 GCTGCTGGTGGTGCT
3535 GCTGCTGGTGGTGCT
1 GCTGCTGGTGGTGCT
3550 GCTG
1 GCTG
3554 GAACTGCAAC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.00, C:0.21, G:0.47, T:0.32
Consensus pattern (15 bp):
GCTGCTGGTGGTGCT
Left flanking sequence: Indices 3020 -- 3519
CATTTCCAGCCCCCCGAGCTGGTCCCCGAGGTACCCGTCCGCCAACTTCTGGTCCAAGTTGCGGT
CCATGGGGTCGGGCAGATCCTTCTTGATCTTCTTCTTGTCCTTCTCCGGCGGGTACAAGTTGGCC
ACCAACCGGTAGCCACACTTCAGCCGCTTGGTGTAGGCAACGCGCTGCCGCTTCAGCGGGTCCTT
GACGGTGGTGCGGAAGGTGCCCAGCCGCTCGCACTGGAAGTACACCGCCTTGGGCTTCAGCGAGT
TGATGACGATCTTGCACCGCTCGTCCACCAGCAACGTGCGCTTGACGTAGTCGATCAAGTCGGGC
TTGTTGGTGAACGTCTTGATGATCTCGTTTTCAATGTACCGCGACTGCAAAATGCCCCCGTCAAA
CTCGTCCGCCCCCACCTGCAGGTGGTGCACCATCAGATGCGGCATCTGGTGGTGGTGGGGCTGCT
GCTGGTGCATCTGGGGGTGCTGCTGCAACTGGTGGTGCATCATCA
Right flanking sequence: Indices 3554 -- 4053
GAACTGCAACTGCGACTGGAGCTCCTGCTGCTGCAATTGCTGCTGGTACCGCTGGCGCTCGGCCC
GGTGTTGCAACTCGGTGGCAGCAGCGGCGGCGGCCGCGGTGTAGCCCCCCTGGTGGTGGAACTGG
TTGGCGTCGTCCGGCGGCGCGCCGTAGGAGACCGCGGCCGCGGCCGTGGCGGTGGCGGACTCGTA
GTCGGGCCGCGGCTGCCCGCCGTCCACGTGGAGATGGTCGTCGTTGGCTCGCTCGTTCAGGGTCA
GCATAAATGCAGGTTCCTGTATAGCTAAGGGTGGTGTATATGGTTTATCGTGGCAATGTTTTTTT
TATTTGAGGTGGAGTCGTGTCGCGGCGAAAAGTTTCCCTGTTCTCATTGGGCAGCATGGTTGCTG
GCCCTGGGGGCGGAAAGGTGGGTTGGTTCGCGGGGGGTTTTTGGGCGCGTGGCGGCGACGGTGTT
GGCGGGCTGGGTTAGTGTGCCCGACTGCCGCGGTCCTGTGGGCTA
Found at i:4773 original size:11 final size:11
Alignment explanation
Indices: 4741--4782 Score: 52
Period size: 11 Copynumber: 4.0 Consensus size: 11
4731 AACCACTTCT
4741 ACTC-ACCATC
1 ACTCAACCATC
*
4751 TCTCAA-CATC
1 ACTCAACCATC
4761 ACTCAACCATC
1 ACTCAACCATC
*
4772 ACTCCACCATC
1 ACTCAACCATC
4783 CACTACCCAC
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
10 12 0.44
11 15 0.56
ACGTcount: A:0.31, C:0.48, G:0.00, T:0.21
Consensus pattern (11 bp):
ACTCAACCATC
Left flanking sequence: Indices 4241 -- 4740
NGCGTTTTCTGGGTGCGTGGGGGCGGTGTAGCGGTGGTAGCGGTGGAAGTGGCGCCCCTTGCGGT
GGAGCGGAGGACGGATAAGGAAAGGTGGGAAAAACGGGCTAGGGGCGTAGGAGAGGGTGTAGGAG
ACGAGAGAAAGGGATGGGGTGGTGTGAGAGGGTGTGTGGGGGTGTGGTGAGGGGTAGAGCGGTGA
GACGGTGGCTACAGTATGCTCTGGAGGTACGAGATCCATCGTGGAATTCGAGATCTAGACGACGG
ACAAATCGTACAGATTTGGAAGAAAAAAGAAAATTTGGGAAAAAGGGGGAACGAGGAATAGACGA
GAGAAGTGGTGTTTACGGGCGTGTAAGAGAGTGGTTGGAGTTAGCACTATGACCCAATAACACAG
GCCATTAGCAACGTAGTCTAAAACCACGCAACCAGAGCCTAAAATGCCTAAGCAACCTTATTCAG
AGTCTTACCCCTGTCTTAGACTTTTACCATCCACCAACCACTTCT
Right flanking sequence: Indices 4783 -- 5282
CACTACCCACTCACCTTCCCCTCTCACCTACAGTCTCTTACCTTCCACCTCTCACCCCTGTTCCT
TTTACCCCTCTCGGTTCACCTTTTCTCACGCCATCTTAGTGCGGCGGATCGTCATGGACACCCTA
GTCGCCAGCATCCAGACCGACCACGAGCACCGCGAGTTCGACTGGCTCGCGCGCGAAGTGGTTGC
CCCCGAGTTTGCCCAGATCATCGAGACCCTCCAGCTCTGCCTGGACCTCCTCTTGTACAACTCCC
CCGAGCACCCGGACGAGGCCCAGCACATCGAGCGCGGGCCGCCGATAAAGCTCCCGGTGCTGCTG
AGCAAGCTGGAAACCCTCAAGGGCGTGGTCACCCGCGACGGTGCCTACGTCACCGACCTCCACTT
GAGCGTGCGCGAGCCCCAGTTCAACCGGGTGCTCAACAAGTTGACCCTCCTGCAACCGTTGTTGC
TCGAGCAGATCATCACCGCCAAACGGTCCATTGACGCTGCGATAG
Found at i:6007 original size:17 final size:18
Alignment explanation
Indices: 5981--6020 Score: 64
Period size: 17 Copynumber: 2.3 Consensus size: 18
5971 GCGTAGGCAC
*
5981 TGGAGTTACGAG-GCCAG
1 TGGAGGTACGAGCGCCAG
5998 TGGAGGTACGAGCGCCAG
1 TGGAGGTACGAGCGCCAG
6016 TGGAG
1 TGGAG
6021 TTGCCAGGGT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
17 11 0.52
18 10 0.48
ACGTcount: A:0.23, C:0.17, G:0.45, T:0.15
Consensus pattern (18 bp):
TGGAGGTACGAGCGCCAG
Left flanking sequence: Indices 5481 -- 5980
AAATCGCCGTGGACCTCTACATCAACCAGGCCGAGGTGTGTCTCGACTTGAAAAAGCTCCACTTG
GTGACGGAGCTGCCGTGGGGGGACATCGACCCCGAGCTGGGCACGCTGTACATCGACATCGTCAA
GAACGAGATCCAGCAGGGCAAGCCGCTCGACCGCGACTACATCGAGAAGCGGCTCCACGAGTTGG
CGCGCTCGCACCACGAGCTGGGGTTCTTCTCCAACGTGCTCAACATGATGAAGCCGAAATACGAC
CCCATCGACTACGTGACCAAGTGTGTGACCTACAACGGCGGCGTGGTGATGATCATGAAGATGAT
CGAGGTGGCGCTGCCGGACCCGGTGCTCGTGCTGGCGTTCACCAAGCTCGACTCGGTGGAGTACT
TGATCACCCGGTTCTTGGACAGCCTCAATAGCATTATGAAGTAATGAATGACGACCTGAAACACG
GATAGCCAGATGCATCTGACTAGCGCGCACAATTAGCGTAGGCAC
Right flanking sequence: Indices 6021 -- 6520
TTGCCAGGGTTTTGAGTTACATCGTAGTTGGAGTTATAGTAGAGTTATCGTGGGTACAGGCACTG
GAGTTACATTTGCCCGTGTTTTACTGTCCTGCAACTGTCACCGGATAAGTGACCTCACCGCATTA
CGGGCTAGCCGAGCAGTTCCGAAGGTTGGGAGCATGTGCCATATGTACGGGCCTCCGTCGGCAAG
CATAGCCCAGTTGGGCTGCGGGGAACCCTTTCGTGGGTGGCGTTGGTGGGTGGGTTGGTCCAATC
ACCGCGCGGGGTTCGGACGGGTTTATCTATTGTTCGGTTGGGACTAGGAAGCCGACACGGCTGAC
AGCCATTGTCGGCCGGCGAATATAGAGGGTTAGTGGGGATGGCGAGGGTGGCGAGGGTGCTACAG
TTTCATAGGCCCGCCACGCTGGCTGCCTCCATTGGAACTACTAAGGTGAGCCAACGGTCGGAGAT
ATGGAGGTTGCCGTATACGGTAATCGAGGCACTGCGAGTGAAAAG
Found at i:6763 original size:13 final size:13
Alignment explanation
Indices: 6745--6785 Score: 55
Period size: 13 Copynumber: 3.2 Consensus size: 13
6735 GAACTACGTC
6745 CCCACCACACTCA
1 CCCACCACACTCA
*
6758 CCCACCGCACTCA
1 CCCACCACACTCA
* *
6771 CCCACTACCCTCA
1 CCCACCACACTCA
6784 CC
1 CC
6786 ACCCTCTCCC
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.24, C:0.63, G:0.02, T:0.10
Consensus pattern (13 bp):
CCCACCACACTCA
Left flanking sequence: Indices 6245 -- 6744
TTCGTGGGTGGCGTTGGTGGGTGGGTTGGTCCAATCACCGCGCGGGGTTCGGACGGGTTTATCTA
TTGTTCGGTTGGGACTAGGAAGCCGACACGGCTGACAGCCATTGTCGGCCGGCGAATATAGAGGG
TTAGTGGGGATGGCGAGGGTGGCGAGGGTGCTACAGTTTCATAGGCCCGCCACGCTGGCTGCCTC
CATTGGAACTACTAAGGTGAGCCAACGGTCGGAGATATGGAGGTTGCCGTATACGGTAATCGAGG
CACTGCGAGTGAAAAGTCGAGCTGGGCGGCGCCCCGTCGCAAAGGAAGCTACACGGCTGCAAAAG
ATGCCCGCCACAGACCACACCCGCCCGTCTAGCTAGCCCGTAGCCCCACGCGGGCCCCGAATCGC
CCACCACCCCGCCACTGTACGGCCCTGCCACAGTAACACTGCCAAGGCTGTCAAGGCTCGCCCAT
GCGTCGGACCACCCAGCCCAGCCCCAACCGCAAACGAACTACGTC
Right flanking sequence: Indices 6786 -- 7285
ACCCTCTCCCAGTAGACTCACCACCCCACCTTAGTAGTCCCGAACCCCGCATCAACGGTCGCGCG
TGTATACAACGCGAGCGTCAAATCGCTACCTCAGACCCACGGGAAAAATAACTTGACACCGGACC
AGCAGTTGCAGTAGTTGCTGAAGTTGTATGAACCGCTGGAGCCGGTTGGTGTATAAAAGACTGTT
CCTGCGCTGCCCCCCCACCATGTCCCGCTACACGCTTTTGGCCGACAACCCGGCCATCGAGAAAC
CGGTGGTCGATGACCGAGCCTACCGGATGTTCACCATCGATGACAACCAGTTGAACGTGTTGGTG
ATCACCGACCCGACGGCCGACAAGGCTGCGGCCGCGCTCGACGTCAACGTGGGTCTGTTTGCCGA
CCACGAGTACCGCATCCCCGGTTTGGCCCACTTTTGCGAACACTTGTTGTTTATGGGCACCGAGA
AGTACCCTGAGGAAAACGAGTACTCGCTGTACCTTGCCAAGCACC
Found at i:10879 original size:13 final size:13
Alignment explanation
Indices: 10858--10921 Score: 51
Period size: 13 Copynumber: 5.0 Consensus size: 13
10848 CTTACCATTG
*
10858 TGACTTGTCTCAA
1 TGACCTGTCTCAA
*
10871 TGACCTGTCTC-C
1 TGACCTGTCTCAA
* *
10883 TGTCCTGTCTC-C
1 TGACCTGTCTCAA
*
10895 TGGACCTGTCTCAT
1 T-GACCTGTCTCAA
*
10909 TGACCTGTTTCAA
1 TGACCTGTCTCAA
10922 GGGTGGCTTT
Statistics
Matches: 42, Mismatches: 7, Indels: 4
0.79 0.13 0.08
Matches are distributed among these distances:
12 12 0.29
13 29 0.69
14 1 0.02
ACGTcount: A:0.14, C:0.31, G:0.17, T:0.38
Consensus pattern (13 bp):
TGACCTGTCTCAA
Left flanking sequence: Indices 10358 -- 10857
TAGTGGGGACTCATCTAAGTCCATAACGCATTCGTACCCTTCGATCTGAGACATCCAACATGGTG
AAGAACGACCAGAAATTCACCAACGGTGCCAATGGGTTGAGGTGGAGTAAACTGTGGTTATTTCT
CCTGGAGGAATAGGACGGTTACCGGGAATAGTATAGCTTTGCTACCTGTGCAGATTGGTTAGCGT
GAGTTAAACGTCCATAGAACTGCGTCTCTACGAACCGGGTTCAAACAACCACTGCGGTTGGTTTC
GATCAAGCTCTATAATGAACAGTTCCTATAGCCCAATCCAGGACGTCCACACTGCGATCTCGATC
AAGCTGAATGAGCACTTTCTATAGCCCAATCCAGGAGGTTCGCTTACGTAACGGACCAGTAGGAA
CCACCAGAGAATAGTTTGAACAGGCATGTAAATCACTGGCACCGTGGACGAGAACCATCATCTAC
CCTTTACAGTCTACCAACTTTACTATTTTTTCACCCTTACCATTG
Right flanking sequence: Indices 10922 -- 11421
GGGTGGCTTTCACGTCATGTACGCCTGACATTTCATACCCCTTTTAACCCCTGCCATAACCAAGA
CACCCTCCCCATGTCCCCACCACTCTCAAACCACGCGTTTCATGTTTTAAGGTTACACTTTTCAC
CCGTGACACGCTCACTGGACACTAAACTAAACAAGCCACAAAACAAGCCACTAAATACGCTACTA
ATCAATCCAATATACACCACCACTTACGCCACCACTAGACACCACCACTATAAACCACCCACACC
CACTAGTAGACACCACACACACCCACCACCCCATAACCTCCTACCAACCCTTCCCCACCACATTT
TTCACGCACCAACGGGTCCCCTGCGTTGGATCAAAATAGACGAGCCAACAATAGGATCGCCGTAC
CCCACACTCTCGAACACTCTCACACTCACTCTCACACCCACCCACCATCCACCAACCATCCACCA
TCCACCATCTACCCACCACTACTCTCACACCCACCCACTCTTCCC
Found at i:10891 original size:12 final size:13
Alignment explanation
Indices: 10872--10916 Score: 56
Period size: 13 Copynumber: 3.5 Consensus size: 13
10862 TTGTCTCAAT
10872 GACCTGTCTCCT-
1 GACCTGTCTCCTG
*
10884 GTCCTGTCTCCTG
1 GACCTGTCTCCTG
* *
10897 GACCTGTCTCATT
1 GACCTGTCTCCTG
10910 GACCTGT
1 GACCTGT
10917 TTCAAGGGTG
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
12 11 0.39
13 17 0.61
ACGTcount: A:0.09, C:0.36, G:0.20, T:0.36
Consensus pattern (13 bp):
GACCTGTCTCCTG
Left flanking sequence: Indices 10372 -- 10871
CTAAGTCCATAACGCATTCGTACCCTTCGATCTGAGACATCCAACATGGTGAAGAACGACCAGAA
ATTCACCAACGGTGCCAATGGGTTGAGGTGGAGTAAACTGTGGTTATTTCTCCTGGAGGAATAGG
ACGGTTACCGGGAATAGTATAGCTTTGCTACCTGTGCAGATTGGTTAGCGTGAGTTAAACGTCCA
TAGAACTGCGTCTCTACGAACCGGGTTCAAACAACCACTGCGGTTGGTTTCGATCAAGCTCTATA
ATGAACAGTTCCTATAGCCCAATCCAGGACGTCCACACTGCGATCTCGATCAAGCTGAATGAGCA
CTTTCTATAGCCCAATCCAGGAGGTTCGCTTACGTAACGGACCAGTAGGAACCACCAGAGAATAG
TTTGAACAGGCATGTAAATCACTGGCACCGTGGACGAGAACCATCATCTACCCTTTACAGTCTAC
CAACTTTACTATTTTTTCACCCTTACCATTGTGACTTGTCTCAAT
Right flanking sequence: Indices 10917 -- 11416
TTCAAGGGTGGCTTTCACGTCATGTACGCCTGACATTTCATACCCCTTTTAACCCCTGCCATAAC
CAAGACACCCTCCCCATGTCCCCACCACTCTCAAACCACGCGTTTCATGTTTTAAGGTTACACTT
TTCACCCGTGACACGCTCACTGGACACTAAACTAAACAAGCCACAAAACAAGCCACTAAATACGC
TACTAATCAATCCAATATACACCACCACTTACGCCACCACTAGACACCACCACTATAAACCACCC
ACACCCACTAGTAGACACCACACACACCCACCACCCCATAACCTCCTACCAACCCTTCCCCACCA
CATTTTTCACGCACCAACGGGTCCCCTGCGTTGGATCAAAATAGACGAGCCAACAATAGGATCGC
CGTACCCCACACTCTCGAACACTCTCACACTCACTCTCACACCCACCCACCATCCACCAACCATC
CACCATCCACCATCTACCCACCACTACTCTCACACCCACCCACTC
Found at i:11173 original size:13 final size:13
Alignment explanation
Indices: 11127--11175 Score: 64
Period size: 13 Copynumber: 3.8 Consensus size: 13
11117 ATCAATCCAA
11127 TATACACCACCAC
1 TATACACCACCAC
*
11140 T-TACGCCACCAC
1 TATACACCACCAC
*
11152 TAGACACCACCAC
1 TATACACCACCAC
*
11165 TATAAACCACC
1 TATACACCACC
11176 CACACCCACT
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
12 11 0.37
13 19 0.63
ACGTcount: A:0.37, C:0.45, G:0.04, T:0.14
Consensus pattern (13 bp):
TATACACCACCAC
Left flanking sequence: Indices 10627 -- 11126
CTATAATGAACAGTTCCTATAGCCCAATCCAGGACGTCCACACTGCGATCTCGATCAAGCTGAAT
GAGCACTTTCTATAGCCCAATCCAGGAGGTTCGCTTACGTAACGGACCAGTAGGAACCACCAGAG
AATAGTTTGAACAGGCATGTAAATCACTGGCACCGTGGACGAGAACCATCATCTACCCTTTACAG
TCTACCAACTTTACTATTTTTTCACCCTTACCATTGTGACTTGTCTCAATGACCTGTCTCCTGTC
CTGTCTCCTGGACCTGTCTCATTGACCTGTTTCAAGGGTGGCTTTCACGTCATGTACGCCTGACA
TTTCATACCCCTTTTAACCCCTGCCATAACCAAGACACCCTCCCCATGTCCCCACCACTCTCAAA
CCACGCGTTTCATGTTTTAAGGTTACACTTTTCACCCGTGACACGCTCACTGGACACTAAACTAA
ACAAGCCACAAAACAAGCCACTAAATACGCTACTAATCAATCCAA
Right flanking sequence: Indices 11176 -- 11675
CACACCCACTAGTAGACACCACACACACCCACCACCCCATAACCTCCTACCAACCCTTCCCCACC
ACATTTTTCACGCACCAACGGGTCCCCTGCGTTGGATCAAAATAGACGAGCCAACAATAGGATCG
CCGTACCCCACACTCTCGAACACTCTCACACTCACTCTCACACCCACCCACCATCCACCAACCAT
CCACCATCCACCATCTACCCACCACTACTCTCACACCCACCCACTCTTCCCACTTCCCACCTTCC
CCACCTTCCACCTTCGCGTTTTTCGGACACCTAATCACCTGCCTCTCCACACCAACACCACCAAC
TACCATGAAGTTCCACACGTTGGCCACGCTAGCAGCGCTATCGGCGGTGGTGGTGGGTGACCCGG
CGCCCCCCGCGCCCGCCGCCGCTGAGCCCGCGGCGCCAGCTGCCCCGGACGTCCCGTTGCCCGCG
GGCCTCACCCTCGCGGACTTCGACGCGCTGGTCGCCAAGCAGTTG
Found at i:11184 original size:23 final size:23
Alignment explanation
Indices: 11158--11210 Score: 61
Period size: 23 Copynumber: 2.3 Consensus size: 23
11148 CCACTAGACA
* *
11158 CCACCACTATAAACCACCCACAC
1 CCACCACTAGAAACCACACACAC
* * *
11181 CCACTAGTAGACACCACACACAC
1 CCACCACTAGAAACCACACACAC
11204 CCACCAC
1 CCACCAC
11211 CCCATAACCT
Statistics
Matches: 23, Mismatches: 7, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.38, C:0.51, G:0.04, T:0.08
Consensus pattern (23 bp):
CCACCACTAGAAACCACACACAC
Left flanking sequence: Indices 10658 -- 11157
GGACGTCCACACTGCGATCTCGATCAAGCTGAATGAGCACTTTCTATAGCCCAATCCAGGAGGTT
CGCTTACGTAACGGACCAGTAGGAACCACCAGAGAATAGTTTGAACAGGCATGTAAATCACTGGC
ACCGTGGACGAGAACCATCATCTACCCTTTACAGTCTACCAACTTTACTATTTTTTCACCCTTAC
CATTGTGACTTGTCTCAATGACCTGTCTCCTGTCCTGTCTCCTGGACCTGTCTCATTGACCTGTT
TCAAGGGTGGCTTTCACGTCATGTACGCCTGACATTTCATACCCCTTTTAACCCCTGCCATAACC
AAGACACCCTCCCCATGTCCCCACCACTCTCAAACCACGCGTTTCATGTTTTAAGGTTACACTTT
TCACCCGTGACACGCTCACTGGACACTAAACTAAACAAGCCACAAAACAAGCCACTAAATACGCT
ACTAATCAATCCAATATACACCACCACTTACGCCACCACTAGACA
Right flanking sequence: Indices 11211 -- 11710
CCCATAACCTCCTACCAACCCTTCCCCACCACATTTTTCACGCACCAACGGGTCCCCTGCGTTGG
ATCAAAATAGACGAGCCAACAATAGGATCGCCGTACCCCACACTCTCGAACACTCTCACACTCAC
TCTCACACCCACCCACCATCCACCAACCATCCACCATCCACCATCTACCCACCACTACTCTCACA
CCCACCCACTCTTCCCACTTCCCACCTTCCCCACCTTCCACCTTCGCGTTTTTCGGACACCTAAT
CACCTGCCTCTCCACACCAACACCACCAACTACCATGAAGTTCCACACGTTGGCCACGCTAGCAG
CGCTATCGGCGGTGGTGGTGGGTGACCCGGCGCCCCCCGCGCCCGCCGCCGCTGAGCCCGCGGCG
CCAGCTGCCCCGGACGTCCCGTTGCCCGCGGGCCTCACCCTCGCGGACTTCGACGCGCTGGTCGC
CAAGCAGTTGCTGCTTGTGGAGTTCTTCTCGCCGTACTGCCACCA
Found at i:11392 original size:18 final size:18
Alignment explanation
Indices: 11349--11394 Score: 65
Period size: 18 Copynumber: 2.6 Consensus size: 18
11339 ACTCTCACAC
11349 CCACCCACCATCCACCAA
1 CCACCCACCATCCACCAA
* *
11367 CCATCCACCATCCACCAT
1 CCACCCACCATCCACCAA
*
11385 CTACCCACCA
1 CCACCCACCA
11395 CTACTCTCAC
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.30, C:0.59, G:0.00, T:0.11
Consensus pattern (18 bp):
CCACCCACCATCCACCAA
Left flanking sequence: Indices 10849 -- 11348
TTACCATTGTGACTTGTCTCAATGACCTGTCTCCTGTCCTGTCTCCTGGACCTGTCTCATTGACC
TGTTTCAAGGGTGGCTTTCACGTCATGTACGCCTGACATTTCATACCCCTTTTAACCCCTGCCAT
AACCAAGACACCCTCCCCATGTCCCCACCACTCTCAAACCACGCGTTTCATGTTTTAAGGTTACA
CTTTTCACCCGTGACACGCTCACTGGACACTAAACTAAACAAGCCACAAAACAAGCCACTAAATA
CGCTACTAATCAATCCAATATACACCACCACTTACGCCACCACTAGACACCACCACTATAAACCA
CCCACACCCACTAGTAGACACCACACACACCCACCACCCCATAACCTCCTACCAACCCTTCCCCA
CCACATTTTTCACGCACCAACGGGTCCCCTGCGTTGGATCAAAATAGACGAGCCAACAATAGGAT
CGCCGTACCCCACACTCTCGAACACTCTCACACTCACTCTCACAC
Right flanking sequence: Indices 11395 -- 11894
CTACTCTCACACCCACCCACTCTTCCCACTTCCCACCTTCCCCACCTTCCACCTTCGCGTTTTTC
GGACACCTAATCACCTGCCTCTCCACACCAACACCACCAACTACCATGAAGTTCCACACGTTGGC
CACGCTAGCAGCGCTATCGGCGGTGGTGGTGGGTGACCCGGCGCCCCCCGCGCCCGCCGCCGCTG
AGCCCGCGGCGCCAGCTGCCCCGGACGTCCCGTTGCCCGCGGGCCTCACCCTCGCGGACTTCGAC
GCGCTGGTCGCCAAGCAGTTGCTGCTTGTGGAGTTCTTCTCGCCGTACTGCCACCACTGTACCGC
GTTTGCTCCCACCTGGGCGCAGACCTTCCGCGAATTCAAGCCCGAGCTCGACAAAATGGGGGTCC
AGATGCGCCAGGTGGACTGTGCGGCCGAGGGCGACTTGTGCGATCGTGAGCAGATCTTTGGCTTT
CCCCAGCTCCGGTTGTACGGGCCCGACCAGCGCGATACCGCCAAG
Found at i:11438 original size:9 final size:8
Alignment explanation
Indices: 11410--11450 Score: 50
Period size: 7 Copynumber: 5.1 Consensus size: 8
11400 CTCACACCCA
11410 CCCACTCTT
1 CCCAC-CTT
11419 CCCA-CTT
1 CCCACCTT
11426 CCCACCTT
1 CCCACCTT
11434 CCCCACCTT
1 -CCCACCTT
11443 -CCACCTT
1 CCCACCTT
11450 C
1 C
11451 GCGTTTTTCG
Statistics
Matches: 29, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
7 14 0.48
8 3 0.10
9 12 0.41
ACGTcount: A:0.12, C:0.61, G:0.00, T:0.27
Consensus pattern (8 bp):
CCCACCTT
Left flanking sequence: Indices 10910 -- 11409
GACCTGTTTCAAGGGTGGCTTTCACGTCATGTACGCCTGACATTTCATACCCCTTTTAACCCCTG
CCATAACCAAGACACCCTCCCCATGTCCCCACCACTCTCAAACCACGCGTTTCATGTTTTAAGGT
TACACTTTTCACCCGTGACACGCTCACTGGACACTAAACTAAACAAGCCACAAAACAAGCCACTA
AATACGCTACTAATCAATCCAATATACACCACCACTTACGCCACCACTAGACACCACCACTATAA
ACCACCCACACCCACTAGTAGACACCACACACACCCACCACCCCATAACCTCCTACCAACCCTTC
CCCACCACATTTTTCACGCACCAACGGGTCCCCTGCGTTGGATCAAAATAGACGAGCCAACAATA
GGATCGCCGTACCCCACACTCTCGAACACTCTCACACTCACTCTCACACCCACCCACCATCCACC
AACCATCCACCATCCACCATCTACCCACCACTACTCTCACACCCA
Right flanking sequence: Indices 11451 -- 11950
GCGTTTTTCGGACACCTAATCACCTGCCTCTCCACACCAACACCACCAACTACCATGAAGTTCCA
CACGTTGGCCACGCTAGCAGCGCTATCGGCGGTGGTGGTGGGTGACCCGGCGCCCCCCGCGCCCG
CCGCCGCTGAGCCCGCGGCGCCAGCTGCCCCGGACGTCCCGTTGCCCGCGGGCCTCACCCTCGCG
GACTTCGACGCGCTGGTCGCCAAGCAGTTGCTGCTTGTGGAGTTCTTCTCGCCGTACTGCCACCA
CTGTACCGCGTTTGCTCCCACCTGGGCGCAGACCTTCCGCGAATTCAAGCCCGAGCTCGACAAAA
TGGGGGTCCAGATGCGCCAGGTGGACTGTGCGGCCGAGGGCGACTTGTGCGATCGTGAGCAGATC
TTTGGCTTTCCCCAGCTCCGGTTGTACGGGCCCGACCAGCGCGATACCGCCAAGGCCAAGTGGCG
GATGTTTGGGCTGTTCCCCCGGGCGGTGGAAAAACTGCCCGAGGC
Found at i:11438 original size:16 final size:17
Alignment explanation
Indices: 11410--11450 Score: 52
Period size: 16 Copynumber: 2.5 Consensus size: 17
11400 CTCACACCCA
11410 CCCACTCTT-CCCA-CTT
1 CCCAC-CTTCCCCACCTT
11426 CCCACCTTCCCCACCTT
1 CCCACCTTCCCCACCTT
11443 -CCACCTTC
1 CCCACCTTC
11451 GCGTTTTTCG
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
15 3 0.13
16 17 0.74
17 3 0.13
ACGTcount: A:0.12, C:0.61, G:0.00, T:0.27
Consensus pattern (17 bp):
CCCACCTTCCCCACCTT
Left flanking sequence: Indices 10910 -- 11409
GACCTGTTTCAAGGGTGGCTTTCACGTCATGTACGCCTGACATTTCATACCCCTTTTAACCCCTG
CCATAACCAAGACACCCTCCCCATGTCCCCACCACTCTCAAACCACGCGTTTCATGTTTTAAGGT
TACACTTTTCACCCGTGACACGCTCACTGGACACTAAACTAAACAAGCCACAAAACAAGCCACTA
AATACGCTACTAATCAATCCAATATACACCACCACTTACGCCACCACTAGACACCACCACTATAA
ACCACCCACACCCACTAGTAGACACCACACACACCCACCACCCCATAACCTCCTACCAACCCTTC
CCCACCACATTTTTCACGCACCAACGGGTCCCCTGCGTTGGATCAAAATAGACGAGCCAACAATA
GGATCGCCGTACCCCACACTCTCGAACACTCTCACACTCACTCTCACACCCACCCACCATCCACC
AACCATCCACCATCCACCATCTACCCACCACTACTCTCACACCCA
Right flanking sequence: Indices 11451 -- 11950
GCGTTTTTCGGACACCTAATCACCTGCCTCTCCACACCAACACCACCAACTACCATGAAGTTCCA
CACGTTGGCCACGCTAGCAGCGCTATCGGCGGTGGTGGTGGGTGACCCGGCGCCCCCCGCGCCCG
CCGCCGCTGAGCCCGCGGCGCCAGCTGCCCCGGACGTCCCGTTGCCCGCGGGCCTCACCCTCGCG
GACTTCGACGCGCTGGTCGCCAAGCAGTTGCTGCTTGTGGAGTTCTTCTCGCCGTACTGCCACCA
CTGTACCGCGTTTGCTCCCACCTGGGCGCAGACCTTCCGCGAATTCAAGCCCGAGCTCGACAAAA
TGGGGGTCCAGATGCGCCAGGTGGACTGTGCGGCCGAGGGCGACTTGTGCGATCGTGAGCAGATC
TTTGGCTTTCCCCAGCTCCGGTTGTACGGGCCCGACCAGCGCGATACCGCCAAGGCCAAGTGGCG
GATGTTTGGGCTGTTCCCCCGGGCGGTGGAAAAACTGCCCGAGGC
Found at i:13790 original size:35 final size:36
Alignment explanation
Indices: 13746--13832 Score: 106
Period size: 38 Copynumber: 2.4 Consensus size: 36
13736 TGGTAGTGGG
* *
13746 ATTGACGAATATGGATGGCATTAGTA-GTGGGA-GA
1 ATTGACGAATATGGATGGCATTAGTATGAGGGATCA
*
13780 ACTTGACGAATATGCTGATGGCATTGGTATGAGGGATCA
1 A-TTGACGAATATG--GATGGCATTAGTATGAGGGATCA
13819 ATTGACGAATATGG
1 ATTGACGAATATGG
13833 TGATGACATG
Statistics
Matches: 45, Mismatches: 3, Indels: 8
0.80 0.05 0.14
Matches are distributed among these distances:
34 1 0.02
35 12 0.27
36 1 0.02
37 12 0.27
38 17 0.38
39 2 0.04
ACGTcount: A:0.31, C:0.09, G:0.32, T:0.28
Consensus pattern (36 bp):
ATTGACGAATATGGATGGCATTAGTATGAGGGATCA
Left flanking sequence: Indices 13246 -- 13745
ACGTTGCCAGTCCCAACCGCCTCCGCAAGCTCAGCTCGGCGGTGGACCCGATGAAGTTCAAGGCG
GGCGACGCGGTGGTGATCTCGCAGGACGGGCAGACGGTGTGGGACCGCGACGCGCAGGGCAAGCC
GTTGACCAACGACGCGCTCGCGTTGCGGCCGGTGTTGCTTCTGATCTTGGACCCGTCGCTTGTGG
ACGAGAACACGATGTCGCAGCTTGCGCCGCGGCCGCAGGGGTACACGCTCTCGGTGTGGGGGTGG
GGAGCGCTTGTGGTGGCGGTGGGTGGTTTTGCCGGGTGGCGGTTGCGCAAGCGGAGACGGCGGGG
CACCACCGGGATGGGGATCATTGGAAACCTCGAGAAGAAGGACTAGTGTAATATACAAACTAAGA
GGGAGGCGGGGGAGCTGTAGCAGGACCTGAAACCGAAGCTTCACAAATTATCCATGTTATCAATC
ACTGGTAGGGAGGAAGGTTTGCCATGTGATTGCCTTGGTAGTGGG
Right flanking sequence: Indices 13833 -- 14332
TGATGACATGGATAGTAGTGGTAGTGTATTAGTAGTGATTGTGTGGTACTGATTGTTTCATGGAG
GTATTGGTATTATCAGGCTCTGGTTCAATTCGATATCGACTGAGTCAACTGTGAATCGAGTTCTT
TGATGATGTTTCGTGATGGTGGTACAATCGAATTAATGATGGCATTGATTGTATTGGTAATGTAT
TGGTAGTGTATTGACAGTCTATTGGTGATTGTAGTGGTGGTGTATTGGTAGTGTATTGGTGATTG
TATTGGTGGTGTATTGGTAGATTGTATCGGAAATGATTGTACTGGTGGTGTGTGGTAGTGATTAC
ATTTGTAGTGGATGTATTAGTATTATCGGTGGCTCTGGTTCAATTGGTATAGAATCGATAGTATT
GGTAGTCGCATATTCCTTGTAATTGGTAATGAAGTCGATTGGAATGGATTGAAGGTAAGTAGCGG
TGGTGTTGATACAATTGATGAGACGATTCGGTAGATGGAAAGCTG
Found at i:14028 original size:11 final size:11
Alignment explanation
Indices: 14012--14112 Score: 103
Period size: 11 Copynumber: 9.0 Consensus size: 11
14002 TGGCATTGAT
*
14012 TGTATTGGTAA
1 TGTATTGGTAG
14023 TGTATTGGTAG
1 TGTATTGGTAG
**
14034 TGTATTGACAG
1 TGTATTGGTAG
* *
14045 TCTATTGGTGAT
1 TGTATTGGT-AG
* *
14057 TGTAGTGGTGG
1 TGTATTGGTAG
14068 TGTATTGGTAG
1 TGTATTGGTAG
*
14079 TGTATTGGTGAT
1 TGTATTGGT-AG
*
14091 TGTATTGGTGG
1 TGTATTGGTAG
14102 TGTATTGGTAG
1 TGTATTGGTAG
14113 ATTGTATCGG
Statistics
Matches: 71, Mismatches: 17, Indels: 4
0.77 0.18 0.04
Matches are distributed among these distances:
11 53 0.75
12 18 0.25
ACGTcount: A:0.18, C:0.02, G:0.36, T:0.45
Consensus pattern (11 bp):
TGTATTGGTAG
Left flanking sequence: Indices 13512 -- 14011
CTTGTGGTGGCGGTGGGTGGTTTTGCCGGGTGGCGGTTGCGCAAGCGGAGACGGCGGGGCACCAC
CGGGATGGGGATCATTGGAAACCTCGAGAAGAAGGACTAGTGTAATATACAAACTAAGAGGGAGG
CGGGGGAGCTGTAGCAGGACCTGAAACCGAAGCTTCACAAATTATCCATGTTATCAATCACTGGT
AGGGAGGAAGGTTTGCCATGTGATTGCCTTGGTAGTGGGATTGACGAATATGGATGGCATTAGTA
GTGGGAGAACTTGACGAATATGCTGATGGCATTGGTATGAGGGATCAATTGACGAATATGGTGAT
GACATGGATAGTAGTGGTAGTGTATTAGTAGTGATTGTGTGGTACTGATTGTTTCATGGAGGTAT
TGGTATTATCAGGCTCTGGTTCAATTCGATATCGACTGAGTCAACTGTGAATCGAGTTCTTTGAT
GATGTTTCGTGATGGTGGTACAATCGAATTAATGATGGCATTGAT
Right flanking sequence: Indices 14113 -- 14612
ATTGTATCGGAAATGATTGTACTGGTGGTGTGTGGTAGTGATTACATTTGTAGTGGATGTATTAG
TATTATCGGTGGCTCTGGTTCAATTGGTATAGAATCGATAGTATTGGTAGTCGCATATTCCTTGT
AATTGGTAATGAAGTCGATTGGAATGGATTGAAGGTAAGTAGCGGTGGTGTTGATACAATTGATG
AGACGATTCGGTAGATGGAAAGCTGGTGGATTGATCCGATATATATAATCAAAGGTACTAAGATT
TTTATGATTACTAGGGCTAGTGATTTAGTAATGGTTGCATCGTAAGGTTGGTTGTTTTGACAGCC
CATAATCGGTAGAAATCAGAGTTGGTGCCAATCATCTGTGGACTAAGCGAGGGTCTACTATTCAA
ACATGTCAGCAATTCCCACTAAACACTCCTCTTTATTCTTGGCTATGTACACATAATCCGGTTAC
TCCGTACCAGCCTCACCCCCTCCGCTTTCTCGCCCCGTCAAGCCA
Found at i:14073 original size:23 final size:24
Alignment explanation
Indices: 14047--14119 Score: 71
Period size: 23 Copynumber: 3.1 Consensus size: 24
14037 ATTGACAGTC
*
14047 TATTGGTGATTGTAGTGGTG-GTG
1 TATTGGTGAGTGTAGTGGTGAGTG
* *
14070 TATTGGT-AGTGTATTGGTGATTG
1 TATTGGTGAGTGTAGTGGTGAGTG
* *
14093 TATTGGTG-GTGTATTGGTAGATTG
1 TATTGGTGAGTGTAGTGGT-GAGTG
14117 TAT
1 TAT
14120 CGGAAATGAT
Statistics
Matches: 44, Mismatches: 3, Indels: 5
0.85 0.06 0.10
Matches are distributed among these distances:
22 10 0.23
23 26 0.59
24 8 0.18
ACGTcount: A:0.16, C:0.00, G:0.37, T:0.47
Consensus pattern (24 bp):
TATTGGTGAGTGTAGTGGTGAGTG
Left flanking sequence: Indices 13547 -- 14046
GTTGCGCAAGCGGAGACGGCGGGGCACCACCGGGATGGGGATCATTGGAAACCTCGAGAAGAAGG
ACTAGTGTAATATACAAACTAAGAGGGAGGCGGGGGAGCTGTAGCAGGACCTGAAACCGAAGCTT
CACAAATTATCCATGTTATCAATCACTGGTAGGGAGGAAGGTTTGCCATGTGATTGCCTTGGTAG
TGGGATTGACGAATATGGATGGCATTAGTAGTGGGAGAACTTGACGAATATGCTGATGGCATTGG
TATGAGGGATCAATTGACGAATATGGTGATGACATGGATAGTAGTGGTAGTGTATTAGTAGTGAT
TGTGTGGTACTGATTGTTTCATGGAGGTATTGGTATTATCAGGCTCTGGTTCAATTCGATATCGA
CTGAGTCAACTGTGAATCGAGTTCTTTGATGATGTTTCGTGATGGTGGTACAATCGAATTAATGA
TGGCATTGATTGTATTGGTAATGTATTGGTAGTGTATTGACAGTC
Right flanking sequence: Indices 14120 -- 14619
CGGAAATGATTGTACTGGTGGTGTGTGGTAGTGATTACATTTGTAGTGGATGTATTAGTATTATC
GGTGGCTCTGGTTCAATTGGTATAGAATCGATAGTATTGGTAGTCGCATATTCCTTGTAATTGGT
AATGAAGTCGATTGGAATGGATTGAAGGTAAGTAGCGGTGGTGTTGATACAATTGATGAGACGAT
TCGGTAGATGGAAAGCTGGTGGATTGATCCGATATATATAATCAAAGGTACTAAGATTTTTATGA
TTACTAGGGCTAGTGATTTAGTAATGGTTGCATCGTAAGGTTGGTTGTTTTGACAGCCCATAATC
GGTAGAAATCAGAGTTGGTGCCAATCATCTGTGGACTAAGCGAGGGTCTACTATTCAAACATGTC
AGCAATTCCCACTAAACACTCCTCTTTATTCTTGGCTATGTACACATAATCCGGTTACTCCGTAC
CAGCCTCACCCCCTCCGCTTTCTCGCCCCGTCAAGCCACTGCTCA
Found at i:14131 original size:39 final size:34
Alignment explanation
Indices: 14023--14152 Score: 118
Period size: 34 Copynumber: 3.7 Consensus size: 34
14013 GTATTGGTAA
* * ** * *
14023 TGTATTGGTAGTGTATTGACAGTCTATTGGTGAT
1 TGTACTGGTGGTGTATTGGTAGTGTATCGGTGAT
* *
14057 TGTAGTGGTGGTGTATTGGTAGTGTATTGGTGAT
1 TGTACTGGTGGTGTATTGGTAGTGTATCGGTGAT
*
14091 TGTATTGGTGGTGTATTGGTAGATTGTATCGGAAATGAT
1 TGTACTGGTGGTGTATTGGTAG--TGTATCGG---TGAT
*
14130 TGTACTGGTGGTGT-GTGGTAGTG
1 TGTACTGGTGGTGTATTGGTAGTG
14153 ATTACATTTG
Statistics
Matches: 82, Mismatches: 9, Indels: 8
0.83 0.09 0.08
Matches are distributed among these distances:
34 50 0.61
36 9 0.11
38 6 0.07
39 17 0.21
ACGTcount: A:0.18, C:0.03, G:0.37, T:0.42
Consensus pattern (34 bp):
TGTACTGGTGGTGTATTGGTAGTGTATCGGTGAT
Left flanking sequence: Indices 13523 -- 14022
GGTGGGTGGTTTTGCCGGGTGGCGGTTGCGCAAGCGGAGACGGCGGGGCACCACCGGGATGGGGA
TCATTGGAAACCTCGAGAAGAAGGACTAGTGTAATATACAAACTAAGAGGGAGGCGGGGGAGCTG
TAGCAGGACCTGAAACCGAAGCTTCACAAATTATCCATGTTATCAATCACTGGTAGGGAGGAAGG
TTTGCCATGTGATTGCCTTGGTAGTGGGATTGACGAATATGGATGGCATTAGTAGTGGGAGAACT
TGACGAATATGCTGATGGCATTGGTATGAGGGATCAATTGACGAATATGGTGATGACATGGATAG
TAGTGGTAGTGTATTAGTAGTGATTGTGTGGTACTGATTGTTTCATGGAGGTATTGGTATTATCA
GGCTCTGGTTCAATTCGATATCGACTGAGTCAACTGTGAATCGAGTTCTTTGATGATGTTTCGTG
ATGGTGGTACAATCGAATTAATGATGGCATTGATTGTATTGGTAA
Right flanking sequence: Indices 14153 -- 14652
ATTACATTTGTAGTGGATGTATTAGTATTATCGGTGGCTCTGGTTCAATTGGTATAGAATCGATA
GTATTGGTAGTCGCATATTCCTTGTAATTGGTAATGAAGTCGATTGGAATGGATTGAAGGTAAGT
AGCGGTGGTGTTGATACAATTGATGAGACGATTCGGTAGATGGAAAGCTGGTGGATTGATCCGAT
ATATATAATCAAAGGTACTAAGATTTTTATGATTACTAGGGCTAGTGATTTAGTAATGGTTGCAT
CGTAAGGTTGGTTGTTTTGACAGCCCATAATCGGTAGAAATCAGAGTTGGTGCCAATCATCTGTG
GACTAAGCGAGGGTCTACTATTCAAACATGTCAGCAATTCCCACTAAACACTCCTCTTTATTCTT
GGCTATGTACACATAATCCGGTTACTCCGTACCAGCCTCACCCCCTCCGCTTTCTCGCCCCGTCA
AGCCACTGCTCAAACTCCGCATCGCTCTTCCCCTGCGAAATGTTC
Found at i:16608 original size:11 final size:11
Alignment explanation
Indices: 16587--16625 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
16577 AATCTGTACT
*
16587 TATACATAACG
1 TATACACAACG
*
16598 TGTACACAACG
1 TATACACAACG
*
16609 TATACACAATG
1 TATACACAACG
16620 TATACA
1 TATACA
16626 TATCCCTCCA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
11 24 1.00
ACGTcount: A:0.44, C:0.21, G:0.10, T:0.26
Consensus pattern (11 bp):
TATACACAACG
Left flanking sequence: Indices 16087 -- 16586
CGTTTTTAAGTGGATCTACCCTCCTAGCGTAACGCTTGAGGCAACCACAAAGAAACCGGTCTATA
TGCACTACCGTCACCAAAGACGAGGCGAAAGCGTCCAGCGCTGATAGAGAAAACCCGGAAAATCA
ACCTAAAACTCTATCAGTAGCTGTAGCTAACACCAGTAGTGAGTTTTTGTACTCGTTTGGGCGTC
TTTTGGGGGAGCGCCAGGCACGTAAGCGATTTCTAGCCCGAAGTTAGTCAATTGGTCTTGGAGGT
GTCTGGGGTGGTCAGGGAACTTACGCGATGGTCGCATTTGTCTCTCGTTGTCGGGAACTGGGCTG
GGAGTTGGCGCATGTTTCAAGCCAGTGTGGTGTAGATCTGATATTCTGGTGTGCGTCTCAGCGGT
TGCAGTTTCCTAAGAATCAAAGCCGACCCAGGCCTTGAAAATTACTATTAATAGATGGATAACGC
AAACTAGCCTAGTCTAAGGTCTTTAAAGCCACGGAAATCTGTACT
Right flanking sequence: Indices 16626 -- 17125
TATCCCTCCAACGCGAATACGATCATCCACCTAGAAGTCCCAGTCTTCCAACCATACCCACACCA
CCGCACTAAAGGCGTTGGGGGGGTCTGGGGGGGCGCCGCTTGCGGCCCCACCAGCCAGGCTAGGT
TCAAACAAACAGGCTAGGGGCAAACAAACAGGCTACGGGCAAACAAACCCATAAACCTTGCCTCC
ATACACTCTTACCTTCTGTGTATTATGTCTATGAATAAATACCATGCATTAGGCCACCAACTTGC
CGGAGATCTCCAAGAGATACGTCTTGAAGTACTCAAAGCTCACCAACGTCACCGCGGACGCCGGC
ACCGTGCGGACCAAGTTGATGATGTACCCCGAATAGAACCCGCGGAACCCGTCCTGGCGGAACAC
CAGCTTGATGGTCTCCACCATCCCCACCTTGTGGTGGTCGCCCGCCTGGATCTGCATCCGGGTGC
GCACGATCTCGTGTGGGTAGGTGATCAGCAGTGCAATCATCTTCA
Found at i:16770 original size:19 final size:18
Alignment explanation
Indices: 16746--16803 Score: 80
Period size: 19 Copynumber: 3.1 Consensus size: 18
16736 CCCCACCAGC
*
16746 CAGGCTAGGTTCAAACAAA
1 CAGGCTAGG-GCAAACAAA
16765 CAGGCTAGGGGCAAACAAA
1 CAGGCTA-GGGCAAACAAA
16784 CAGGCTACGGGCAAACAAA
1 CAGGCTA-GGGCAAACAAA
16803 C
1 C
16804 CCATAAACCT
Statistics
Matches: 36, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
19 34 0.94
20 2 0.06
ACGTcount: A:0.41, C:0.24, G:0.26, T:0.09
Consensus pattern (18 bp):
CAGGCTAGGGCAAACAAA
Left flanking sequence: Indices 16246 -- 16745
ACACCAGTAGTGAGTTTTTGTACTCGTTTGGGCGTCTTTTGGGGGAGCGCCAGGCACGTAAGCGA
TTTCTAGCCCGAAGTTAGTCAATTGGTCTTGGAGGTGTCTGGGGTGGTCAGGGAACTTACGCGAT
GGTCGCATTTGTCTCTCGTTGTCGGGAACTGGGCTGGGAGTTGGCGCATGTTTCAAGCCAGTGTG
GTGTAGATCTGATATTCTGGTGTGCGTCTCAGCGGTTGCAGTTTCCTAAGAATCAAAGCCGACCC
AGGCCTTGAAAATTACTATTAATAGATGGATAACGCAAACTAGCCTAGTCTAAGGTCTTTAAAGC
CACGGAAATCTGTACTTATACATAACGTGTACACAACGTATACACAATGTATACATATCCCTCCA
ACGCGAATACGATCATCCACCTAGAAGTCCCAGTCTTCCAACCATACCCACACCACCGCACTAAA
GGCGTTGGGGGGGTCTGGGGGGGCGCCGCTTGCGGCCCCACCAGC
Right flanking sequence: Indices 16804 -- 17303
CCATAAACCTTGCCTCCATACACTCTTACCTTCTGTGTATTATGTCTATGAATAAATACCATGCA
TTAGGCCACCAACTTGCCGGAGATCTCCAAGAGATACGTCTTGAAGTACTCAAAGCTCACCAACG
TCACCGCGGACGCCGGCACCGTGCGGACCAAGTTGATGATGTACCCCGAATAGAACCCGCGGAAC
CCGTCCTGGCGGAACACCAGCTTGATGGTCTCCACCATCCCCACCTTGTGGTGGTCGCCCGCCTG
GATCTGCATCCGGGTGCGCACGATCTCGTGTGGGTAGGTGATCAGCAGTGCAATCATCTTCAGGA
TCGCCAGCGCCCCGATGAGCCGCACTAGGTACCCGTCGTCGTGCACGGGGATGTCGCAGCGGAAC
ACCTGTTTGAGTTTTTCGTACACGGGGAAGTGGATCCCCACGTGGACAAGGCCGAAGAGCGACGG
CAAGAGGCCCAGGTAGAACACGGGGAGGCCCTCCTCCTTGTACAT
Found at i:18549 original size:13 final size:13
Alignment explanation
Indices: 18526--18588 Score: 74
Period size: 13 Copynumber: 4.9 Consensus size: 13
18516 TATTGGTTGT
18526 GTTAT-GGGTAGC
1 GTTATCGGGTAGC
18538 GTTATCGGGTAGC
1 GTTATCGGGTAGC
* *
18551 GTTATTGGGTAGT
1 GTTATCGGGTAGC
* *
18564 GTTATCGGGGAGT
1 GTTATCGGGTAGC
*
18577 ATTATCGGGTAG
1 GTTATCGGGTAG
18589 TGTGGAATGT
Statistics
Matches: 44, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
12 5 0.11
13 39 0.89
ACGTcount: A:0.17, C:0.08, G:0.40, T:0.35
Consensus pattern (13 bp):
GTTATCGGGTAGC
Left flanking sequence: Indices 18026 -- 18525
GTGGGTGGACGATGGCTTCGAAGCAGGCGAAAAACGAGCTGAGGGTTTGTAGGGGGGCTGTTTGG
GAGGTAGGGGGGCTGGTTCAGCGCTCGGGCGGCGGTTTGTGTGTGCGACGAGGGCTAAACTGCGG
GATGGCGTGGGCGATGCTTATGTCCGAGTTGTTGGTCGCTGAGGTCTTTGCGCGCGGTTAAAAAC
GGGCGCGCACCAGGGTGGGCTTAAGCGAGAGGCGATCCGGGGAAACGAGAGGGGTAGGTGGGTGA
GGGTGGAGAGGCTACGGAGATATGGGGACGGTACGAGGGTTTGGTGGGGGGTGCCCGAGATCGGC
GGAAAAAAGCGGTGAAAACGGTGAAAAAGCGATGGTGGTTGCTGGGTGCATATAGTGGGTGGAGA
GGTGAGGTATTTAGTAGTGTTACGGTTTGGCTGTGGTTGCTCTGGGGATGGAACTGGGGTGAATG
CGGTGGTGGTATATCGCGTAGTCTATCGGTAAAGTTATTGGTTGT
Right flanking sequence: Indices 18589 -- 19088
TGTGGAATGTGATAGGGTGGGCAAAGAGTGTGATTGGCTGCTATTAGTAGGACCAGAAGTTCCAC
GAAAGTTTACCCTGGCACCCAAACCGCCAGCCCGTCCATTCCACACCCTTCCGCCCTTATCGCGC
CATTCCACCGCTTCTTCACCCACCGCTTCTTCCCCCCACTCACGCGTCGGTGTTAGCCGCCTGCA
TACAGCCACCCATATCACCAGATCATCTCCACCCACCCACCATGACCAAGCTCTTCCTCTCCGCG
AAAGCAACCCTCGAGGGAGTCACGGGGCTCAAGCCCAAGGACTCGCCCCAGGACAAGTACGAATA
CACCTTCACCATTGAGTGCACCCGCTGCCGCACCGTGCACGACAAGCCCGTCACCATCAACCAGT
ACGAGCACCACGAGCACGCCGGGTCGCGGGGCGAGCTGCTGTTCGTGTTCCGGTGCAAGGAGTGC
AAGAGCGAGCACAACGCGAACATCGAGGTGACGAAAAAAACCGTG
Found at i:19394 original size:13 final size:13
Alignment explanation
Indices: 19360--19435 Score: 75
Period size: 13 Copynumber: 6.0 Consensus size: 13
19350 TGAATATAGT
*
19360 AGGGATAGAACGG
1 AGGGATAGAATGG
* *
19373 GGGGTTAGAATGG
1 AGGGATAGAATGG
*
19386 AGGAATAGAATGG
1 AGGGATAGAATGG
19399 AGGGATAGAAT--
1 AGGGATAGAATGG
* * *
19410 AGAGATCGAATGA
1 AGGGATAGAATGG
19423 AGGGATAGAATGG
1 AGGGATAGAATGG
19436 GGAGAGGAAG
Statistics
Matches: 49, Mismatches: 12, Indels: 4
0.75 0.18 0.06
Matches are distributed among these distances:
11 9 0.18
13 40 0.82
ACGTcount: A:0.39, C:0.03, G:0.42, T:0.16
Consensus pattern (13 bp):
AGGGATAGAATGG
Left flanking sequence: Indices 18860 -- 19359
CGAGGGAGTCACGGGGCTCAAGCCCAAGGACTCGCCCCAGGACAAGTACGAATACACCTTCACCA
TTGAGTGCACCCGCTGCCGCACCGTGCACGACAAGCCCGTCACCATCAACCAGTACGAGCACCAC
GAGCACGCCGGGTCGCGGGGCGAGCTGCTGTTCGTGTTCCGGTGCAAGGAGTGCAAGAGCGAGCA
CAACGCGAACATCGAGGTGACGAAAAAAACCGTGGACGAGCTGGAGGTGTGGACGCCGTTGTTGG
AGTTGGATGCCCGGGGTCTTGATTTCAAGCTGTTTATCCCCCAGGGCCAGTTTGAGTGTGTGGGA
GCGGAGTCCGGGACGAAGTTTGCCGAGGTGGAGTTGGAGGAGAACGAGTGGTACGACTATGACGA
GAAGGCGGGGGCCGAGGTGAGCATTACCGAGGTGGAGTGGCGTATCGAGCGGACGTAGGGTGACG
GTGTTAGGGATGAGATAATGAGTGTACATATGGATTGAATATAGT
Right flanking sequence: Indices 19436 -- 19935
GGAGAGGAAGTATTATGCAAGGGGTAGCGACACAAGGATGAGTTAGACGAAACAGGTAGACAATA
CGGGCGGTACGCAGTTTGAGATGGATCATTGTAACACTTACGAGGTAAGAACGCACCAATTGGCC
CAGGAGGGCTGATAGCTCTAGCTTAAGCTCTAGCTTAATTGACTCAATGTCTAATTTACGGGGTA
ACTTGTGAACTTGACCGATTTCTCCAAATCGATCCCTATCCAAAGTTGACCGAGCAAGACTTTTA
AAGACCATCCATCAACCATACTTGCCCGCTCGAGCCGACCCAGCCCGCGGCCCACCAGACCGGCG
GCCACGTCACAATGGTACGCTCGCATAATTGAAATTAGCTCGACGCGATGGACTACCACGCATCA
AGACCCGGCAACAATCAGCCGAAGAGCCCAAAAACACACCAGACCCCGGTCGAACCTACACACCA
CCCGGCCCACCCATTGCACCCCATCTCCGACGACAATTACTCCCC
Found at i:19596 original size:12 final size:12
Alignment explanation
Indices: 19579--19603 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
19569 GAGGGCTGAT
19579 AGCTCTAGCTTA
1 AGCTCTAGCTTA
19591 AGCTCTAGCTTA
1 AGCTCTAGCTTA
19603 A
1 A
19604 TTGACTCAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.28, C:0.24, G:0.16, T:0.32
Consensus pattern (12 bp):
AGCTCTAGCTTA
Left flanking sequence: Indices 19079 -- 19578
AAAAACCGTGGACGAGCTGGAGGTGTGGACGCCGTTGTTGGAGTTGGATGCCCGGGGTCTTGATT
TCAAGCTGTTTATCCCCCAGGGCCAGTTTGAGTGTGTGGGAGCGGAGTCCGGGACGAAGTTTGCC
GAGGTGGAGTTGGAGGAGAACGAGTGGTACGACTATGACGAGAAGGCGGGGGCCGAGGTGAGCAT
TACCGAGGTGGAGTGGCGTATCGAGCGGACGTAGGGTGACGGTGTTAGGGATGAGATAATGAGTG
TACATATGGATTGAATATAGTAGGGATAGAACGGGGGGTTAGAATGGAGGAATAGAATGGAGGGA
TAGAATAGAGATCGAATGAAGGGATAGAATGGGGAGAGGAAGTATTATGCAAGGGGTAGCGACAC
AAGGATGAGTTAGACGAAACAGGTAGACAATACGGGCGGTACGCAGTTTGAGATGGATCATTGTA
ACACTTACGAGGTAAGAACGCACCAATTGGCCCAGGAGGGCTGAT
Right flanking sequence: Indices 19604 -- 20103
TTGACTCAATGTCTAATTTACGGGGTAACTTGTGAACTTGACCGATTTCTCCAAATCGATCCCTA
TCCAAAGTTGACCGAGCAAGACTTTTAAAGACCATCCATCAACCATACTTGCCCGCTCGAGCCGA
CCCAGCCCGCGGCCCACCAGACCGGCGGCCACGTCACAATGGTACGCTCGCATAATTGAAATTAG
CTCGACGCGATGGACTACCACGCATCAAGACCCGGCAACAATCAGCCGAAGAGCCCAAAAACACA
CCAGACCCCGGTCGAACCTACACACCACCCGGCCCACCCATTGCACCCCATCTCCGACGACAATT
ACTCCCCTCCCATGAGTGATAAATCAACACGCCTTATTCGCGCACCACATGGCATATGCACCGAA
CCCGGGTAGTTACTCCGAGGTAACTCCGAACACCGGTGATCCCGCGCCCCAGGATAACGCCAGCG
TGCTCGTGCGCCCCGGACCATCTCCGGCGACAGTTTCCGCCGCAA
Found at i:21369 original size:9 final size:9
Alignment explanation
Indices: 21355--21379 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
21345 AATGTAGTAA
21355 TAGATGAAT
1 TAGATGAAT
21364 TAGATGAAT
1 TAGATGAAT
21373 TAGATGA
1 TAGATGA
21380 GTCAGAAGAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.44, C:0.00, G:0.24, T:0.32
Consensus pattern (9 bp):
TAGATGAAT
Left flanking sequence: Indices 20855 -- 21354
ACCACCATTCCTCCCTACGCCAAGAGCGTGTTTGAGGGGTGGTCCAAGATCACCGCCGTCGACGG
TATTGGCGGGTTGTACAAGGGCTTGGTGCCGTTGTGGTGCCGTCAGATCCCCTACACCATGGTCA
AGTTCACCACGTTCGAGGCCACGGTGGACCAGATCTACAAGTACATGGGCAAGACCCCGAAGGAC
TTTACTCCTGTGCAGCAGACCGGGGTGTCGTTCTTGGGTGGTTACATTGCCGGTATTTTCTGTGC
GGTGGTGTCGCACCCCGCGGACGTGATGGTGTCCAAGGTGACCACTGACAAGCACGCGGGCGAGC
TGACCATGGGCGCGGTGTCGCGGATCTACGGCAACATTGGGTTCAGCGGGTTGTGGAACGGGTTG
CCGATGAGAATTGTCATGATCGGTACGTTGACCGGGTTCCAGTGGTTGATCTACGACACGTTTAA
GGTGTCGGTTGGGTTGCCCACCACCGGTGGCCACTAATGTAGTAA
Right flanking sequence: Indices 21380 -- 21879
GTCAGAAGAGTGCGTAGGACGCGATGACAGGCAGCACAGTGGCACGAGGCTGCTAAAAAGGGGCA
TGGAACGTGTCATGGAACGTCTCGCTCGTATATTTGAGGTACCGTCCCTAAAGGGTAATGTAATG
AGCAAACAACGGGATAAACGCACGCGAACGTCGCGTGGCGGGGCTTTGACAACGTGATCTCGGGT
GTTTGCGGGGCGATAAACCACCCCGCTGAACAGCAGCAAATTATGGCCTGAAAAAGTGGCCAGGT
TGGTTTCAAGGCGACGCTGTCAAAGCTGTCAAAGCTGTCAACGGCTGCAAAACCAGTGATACACC
GTTGACATCGTGTGCAAAACTAGTGACACATATATCTGCGACTGTATTGTGGCTGCATTAAGCCC
TATTGTGTCCTATACAGTGTCCTACACTAAAGATGCACAATGGGACAGCACTGCTGGCCAAACCA
ACAGCCTAGCCTCCTCCTACCCACTACAGCCCCTACTTTCTCTGT
Found at i:21669 original size:9 final size:9
Alignment explanation
Indices: 21655--21680 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
21645 TCAAGGCGAC
21655 GCTGTCAAA
1 GCTGTCAAA
21664 GCTGTCAAA
1 GCTGTCAAA
21673 GCTGTCAA
1 GCTGTCAA
21681 CGGCTGCAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.31, C:0.23, G:0.23, T:0.23
Consensus pattern (9 bp):
GCTGTCAAA
Left flanking sequence: Indices 21155 -- 21654
ACCACTGACAAGCACGCGGGCGAGCTGACCATGGGCGCGGTGTCGCGGATCTACGGCAACATTGG
GTTCAGCGGGTTGTGGAACGGGTTGCCGATGAGAATTGTCATGATCGGTACGTTGACCGGGTTCC
AGTGGTTGATCTACGACACGTTTAAGGTGTCGGTTGGGTTGCCCACCACCGGTGGCCACTAATGT
AGTAATAGATGAATTAGATGAATTAGATGAGTCAGAAGAGTGCGTAGGACGCGATGACAGGCAGC
ACAGTGGCACGAGGCTGCTAAAAAGGGGCATGGAACGTGTCATGGAACGTCTCGCTCGTATATTT
GAGGTACCGTCCCTAAAGGGTAATGTAATGAGCAAACAACGGGATAAACGCACGCGAACGTCGCG
TGGCGGGGCTTTGACAACGTGATCTCGGGTGTTTGCGGGGCGATAAACCACCCCGCTGAACAGCA
GCAAATTATGGCCTGAAAAAGTGGCCAGGTTGGTTTCAAGGCGAC
Right flanking sequence: Indices 21681 -- 22180
CGGCTGCAAAACCAGTGATACACCGTTGACATCGTGTGCAAAACTAGTGACACATATATCTGCGA
CTGTATTGTGGCTGCATTAAGCCCTATTGTGTCCTATACAGTGTCCTACACTAAAGATGCACAAT
GGGACAGCACTGCTGGCCAAACCAACAGCCTAGCCTCCTCCTACCCACTACAGCCCCTACTTTCT
CTGTTTATTCGGAGACCCGGTCTCCTATTACTATGCAAGGGGGACTAGTCCCACACGTTCTTGAA
AAGATCGCTGTCGAGCCCGTTCAGGCCAAACGACGACTTGACGGGCGCCGGGGTGTTGTATGAGG
CAGGCACCGCGTCCGCCCACTCGTTGGCCCACTGCTGCTGCTGCGGCGGCTGGCGGGGCTGGTGC
TGAGGCGGCTGCTGCGGGGTCGACGACACCTGCTGCACCGGAGTCAGGGTTGCTGCGGGGTTGGA
GCCAAAGTTCAACCCCTGCAACGAGTTGGCCACCGAGTTGACGCT
Found at i:23517 original size:16 final size:17
Alignment explanation
Indices: 23491--23523 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
23481 TGTCTCTAAA
23491 CCACTCAAGCCAACAAC
1 CCACTCAAGCCAACAAC
*
23508 CCACTC-AGCCCACAAC
1 CCACTCAAGCCAACAAC
23524 TTTCTAAACC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.36, C:0.52, G:0.06, T:0.06
Consensus pattern (17 bp):
CCACTCAAGCCAACAAC
Left flanking sequence: Indices 22991 -- 23490
TCAACGATTTTTTTGGTGTGCATGTAGGGTAAACAAACAGGCGGCTGAGGTTGCGGTACGGGTGG
GACCGCGTGGAGGGGAGAGGAGGGAAGGGATGGGTGTGGAGGCGTGGGTGGTGGGGGGTGGTAGA
GGGTGTGGTAGGGGTGCTGTGAGAGTGTGGTTACAGTGGTGACAGTGGTGAGAGTTTGGCGGTGT
TGAATGGGAGAAGGCATTAGATTGTTATGGTAGTGTGGTAGCGTGTCAGGTGATGAGTCGCGTGG
GGTAGAAAAGAGGTCGAAAAAGGCGATTAGAAAGATAGAAGAGAGAGAAGGAGAAGAGGAAGGAT
GACGTAAGGAAGGGAACTTTGGTTAAAGAAGAGAGAAAGATGAAGGAGAAGGGTGGACATGGTAG
AAAACAAATAAATAATCAAGTAGCTACCGGTTTTGGCTACTCATTCCACCCAGATTCCCCACCAC
TACCCTACCACCTGTTTCCCCACGCTCACAACGCGTGTCTCTAAA
Right flanking sequence: Indices 23524 -- 24023
TTTCTAAACCGTATCCCCACTTCTAATCACCCCGACCTCACCCACCACCCAGCATACCCCCACTT
TCGACCCCCTTTTCTTCACCCACCCACCAACCACTTTCCAACTTTTTTCGCATCTCTTCACCATG
CTTGGGCTCACAAACACCCGGGCCGTGTGGACACGGCTCCCCACGCGGGCGCTCCGGTGGCGCCA
CCTGGGCTCCTACAAGGCGTCGGACGCCACCGTCGACACCGACGAGATCATCACCGAGAACAACC
CGTGGTCGCCCACCCTCTACACCGACATCGTCAAGGTGAAGCCCCGCGGGGTGTGGCTGCGGGCA
GTGCTGCTCCCGGAACGGTACCGGTTGAGCTACCAGACGCTCTACGAGGCCCCCGGCTCCAAGTA
CGTGCTGTTGTTGCGGCGGATCACCATGTCGTTTGCGGTGTTGGGGGTGTACGGGGCCAAGCTCT
TTTTCGAGCTGGCGCAGTTCGACGACGTCTACGCAGCCATCACGT
Found at i:24498 original size:42 final size:42
Alignment explanation
Indices: 24432--24543 Score: 138
Period size: 42 Copynumber: 2.7 Consensus size: 42
24422 GAGTAGGGGG
* * *
24432 GTCATCTGGTGCTACTAGTGGATTATGGGTGGGTG-GATTGGT
1 GTCATCTGGTGCTACTAATCGATTATGGG-GGGTGCCATTGGT
*
24474 GTCATCTGGTGCTACTAATCGATTATAGGGGGTGCCATTGGT
1 GTCATCTGGTGCTACTAATCGATTATGGGGGGTGCCATTGGT
* *
24516 ATCATCCTGGTGTTACTAA-CGATTATGG
1 GTCAT-CTGGTGCTACTAATCGATTATGG
24544 TGTCTGGTTC
Statistics
Matches: 61, Mismatches: 7, Indels: 4
0.85 0.10 0.06
Matches are distributed among these distances:
41 5 0.08
42 44 0.72
43 12 0.20
ACGTcount: A:0.19, C:0.14, G:0.32, T:0.35
Consensus pattern (42 bp):
GTCATCTGGTGCTACTAATCGATTATGGGGGGTGCCATTGGT
Left flanking sequence: Indices 23932 -- 24431
GATCACCATGTCGTTTGCGGTGTTGGGGGTGTACGGGGCCAAGCTCTTTTTCGAGCTGGCGCAGT
TCGACGACGTCTACGCAGCCATCACGTTGGCCGCCACCCTGGGCCCGATGTTCTTTGTCCAGTAC
AAGACGCGTGACTACGTGACGCGGATCTTCCGCCTCTACGACAAGGAGACCCCCCAGACGTTGGA
GTCGCTCGTCACCGACGAGAAGTTGGTGATGGAAAAGTTGTCGGTGATGGGGGGCAAGACGTACA
ACGAGTTGCTCCAGGTGCTGAACAACCCGCTGTTGAAGTTGGCGCCGCCGCAGCGGATGTTTGGC
CCGTTGGCGTCGTGGCGGGAGGTGGACCCTGCGTCGGGCCGTGCCCGCAACCACTACGTGGTGGA
CAACATTGGCGGGCTCAAGATGGACCGGTTGTGGGGGATTGTCGAGCACAACTCGGGGATCAACA
ACGGGCGGTATATCGACGGCGAGCGGGAGCCCGAAGAGTAGGGGG
Right flanking sequence: Indices 24544 -- 25043
TGTCTGGTTCTGCCTGGTTTGATCTACTAGGGTCTATTTGGGCCCATTGGGTACGGATCGGATCA
TTGTACCCGTTGAGCGTCCGATCATTTCTCCACACTCATGCATTCTGGTTTGAAACCGACGCTTG
AGCTGACTGTGGTAACCACCTCGGTTCACCACCTTGTACATAATAATAGACACAAAATGGAGTTT
AATGTCTGTTAGTAGAGCATGTGGTCAATTGGTCACATTACTAGAGCATGTGGCCAATTCATGGT
CACACATGAGTATGTGGCCACTCACCGATACGTAACCATCCAATGGACATGCTACCTACTACATA
GCCTTTCAGTGGAAATGGCCACCTACTACATACCCATTTAATGGATAGGGCCACCAGTGATACAT
AACCATTCAATGGATACGGCACCATTGTAGCCACACAGCCTCGCGGCACCACCCATTGTGGCCAC
CCACCCTGGCCACCTTTCTTGTGGCCACCTATCCATTGTCTCTAC
Found at i:24921 original size:32 final size:32
Alignment explanation
Indices: 24857--24949 Score: 82
Period size: 32 Copynumber: 2.8 Consensus size: 32
24847 TGGACATGCT
* * * *
24857 ACCTACTACATAGCC-TTTCAGTGGAAATGGCC
1 ACCTACTACATAACCATTT-AATGGATAGGGCC
*
24889 ACCTACTACATACCCATTTAATGGATAGGGCC
1 ACCTACTACATAACCATTTAATGGATAGGGCC
*
24921 ACCAGTGA-TACATAACCATTCAATGGATA
1 ACC--T-ACTACATAACCATTTAATGGATA
24950 CGGCACCATT
Statistics
Matches: 51, Mismatches: 6, Indels: 6
0.81 0.10 0.10
Matches are distributed among these distances:
32 27 0.53
33 3 0.06
34 20 0.39
35 1 0.02
ACGTcount: A:0.33, C:0.26, G:0.16, T:0.25
Consensus pattern (32 bp):
ACCTACTACATAACCATTTAATGGATAGGGCC
Left flanking sequence: Indices 24357 -- 24856
GGATTGTCGAGCACAACTCGGGGATCAACAACGGGCGGTATATCGACGGCGAGCGGGAGCCCGAA
GAGTAGGGGGGTCATCTGGTGCTACTAGTGGATTATGGGTGGGTGGATTGGTGTCATCTGGTGCT
ACTAATCGATTATAGGGGGTGCCATTGGTATCATCCTGGTGTTACTAACGATTATGGTGTCTGGT
TCTGCCTGGTTTGATCTACTAGGGTCTATTTGGGCCCATTGGGTACGGATCGGATCATTGTACCC
GTTGAGCGTCCGATCATTTCTCCACACTCATGCATTCTGGTTTGAAACCGACGCTTGAGCTGACT
GTGGTAACCACCTCGGTTCACCACCTTGTACATAATAATAGACACAAAATGGAGTTTAATGTCTG
TTAGTAGAGCATGTGGTCAATTGGTCACATTACTAGAGCATGTGGCCAATTCATGGTCACACATG
AGTATGTGGCCACTCACCGATACGTAACCATCCAATGGACATGCT
Right flanking sequence: Indices 24950 -- 25449
CGGCACCATTGTAGCCACACAGCCTCGCGGCACCACCCATTGTGGCCACCCACCCTGGCCACCTT
TCTTGTGGCCACCTATCCATTGTCTCTACCCTCTATCTCCAGTCACTGATGCATTTACCCCTTAT
TCTCCTCGGATCAACGGGTATTACCACCAATCACTTAGGAATCCACGTTCACTCACGCCAATCAC
GCCACCCTACGCTCATTCTACGCCACTCACACTACACCACTTCACACTACGCCACTCGCACTACA
CCACTCACACTACACCACCACTCCCGTCTCTTCTCTCGGTTCCACCTGCCGTTTTCTCCGATCGA
GATCGCCGGCCCCTCTGTATCCCTCGTAAACCACCATCATCACACGCCAATCAAATGGCCCGAGG
CTCTGCAGACCCCGGCCGCCCCTGTCCTCTACGGATCAGGCAGCGTGGAGCAGACGCACCCAGAC
GCAGCGGTAAGCACCACCTGAGCCCACCATCGCCTCCAAACCAGC
Found at i:25179 original size:14 final size:14
Alignment explanation
Indices: 25162--25227 Score: 96
Period size: 14 Copynumber: 4.6 Consensus size: 14
25152 TACGCTCATT
*
25162 CTACGCCACTCACA
1 CTACACCACTCACA
25176 CTACACCACTTCACA
1 CTACACCAC-TCACA
* *
25191 CTACGCCACTCGCA
1 CTACACCACTCACA
25205 CTACACCACTCACA
1 CTACACCACTCACA
25219 CTACACCAC
1 CTACACCAC
25228 CACTCCCGTC
Statistics
Matches: 46, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
14 33 0.72
15 13 0.28
ACGTcount: A:0.30, C:0.50, G:0.05, T:0.15
Consensus pattern (14 bp):
CTACACCACTCACA
Left flanking sequence: Indices 24662 -- 25161
AACCGACGCTTGAGCTGACTGTGGTAACCACCTCGGTTCACCACCTTGTACATAATAATAGACAC
AAAATGGAGTTTAATGTCTGTTAGTAGAGCATGTGGTCAATTGGTCACATTACTAGAGCATGTGG
CCAATTCATGGTCACACATGAGTATGTGGCCACTCACCGATACGTAACCATCCAATGGACATGCT
ACCTACTACATAGCCTTTCAGTGGAAATGGCCACCTACTACATACCCATTTAATGGATAGGGCCA
CCAGTGATACATAACCATTCAATGGATACGGCACCATTGTAGCCACACAGCCTCGCGGCACCACC
CATTGTGGCCACCCACCCTGGCCACCTTTCTTGTGGCCACCTATCCATTGTCTCTACCCTCTATC
TCCAGTCACTGATGCATTTACCCCTTATTCTCCTCGGATCAACGGGTATTACCACCAATCACTTA
GGAATCCACGTTCACTCACGCCAATCACGCCACCCTACGCTCATT
Right flanking sequence: Indices 25228 -- 25727
CACTCCCGTCTCTTCTCTCGGTTCCACCTGCCGTTTTCTCCGATCGAGATCGCCGGCCCCTCTGT
ATCCCTCGTAAACCACCATCATCACACGCCAATCAAATGGCCCGAGGCTCTGCAGACCCCGGCCG
CCCCTGTCCTCTACGGATCAGGCAGCGTGGAGCAGACGCACCCAGACGCAGCGGTAAGCACCACC
TGAGCCCACCATCGCCTCCAAACCAGCACGAAGCACGCAAAAACCAGCCAGTAAATAGCAAAAAC
GAGCCACTAAACAACCAACCGCTTTCTCGCCACCCACCCACACCCACCCACAACCGCCCTACTCC
ATCCCACACCCGCCTACCTCGTTCCCGCTCCCCACTTCCCCAACCTCCGGTGCGGCGTTCCATGC
AGGCGCGGCGAAATCGCCGTACAACAGCCGTTTCCTCTTGACAGCCACCATGGGCATCTTCGGAC
ACAGTGGCCATCGCAAGCCAGCCAAGCTGCTGGTGGGCTACTACG
Found at i:25196 original size:29 final size:28
Alignment explanation
Indices: 25162--25227 Score: 105
Period size: 29 Copynumber: 2.3 Consensus size: 28
25152 TACGCTCATT
25162 CTACGCCACTCACACTACACCACTTCACA
1 CTACGCCACTCACACTACACCAC-TCACA
*
25191 CTACGCCACTCGCACTACACCACTCACA
1 CTACGCCACTCACACTACACCACTCACA
*
25219 CTACACCAC
1 CTACGCCAC
25228 CACTCCCGTC
Statistics
Matches: 35, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
28 13 0.37
29 22 0.63
ACGTcount: A:0.30, C:0.50, G:0.05, T:0.15
Consensus pattern (28 bp):
CTACGCCACTCACACTACACCACTCACA
Left flanking sequence: Indices 24662 -- 25161
AACCGACGCTTGAGCTGACTGTGGTAACCACCTCGGTTCACCACCTTGTACATAATAATAGACAC
AAAATGGAGTTTAATGTCTGTTAGTAGAGCATGTGGTCAATTGGTCACATTACTAGAGCATGTGG
CCAATTCATGGTCACACATGAGTATGTGGCCACTCACCGATACGTAACCATCCAATGGACATGCT
ACCTACTACATAGCCTTTCAGTGGAAATGGCCACCTACTACATACCCATTTAATGGATAGGGCCA
CCAGTGATACATAACCATTCAATGGATACGGCACCATTGTAGCCACACAGCCTCGCGGCACCACC
CATTGTGGCCACCCACCCTGGCCACCTTTCTTGTGGCCACCTATCCATTGTCTCTACCCTCTATC
TCCAGTCACTGATGCATTTACCCCTTATTCTCCTCGGATCAACGGGTATTACCACCAATCACTTA
GGAATCCACGTTCACTCACGCCAATCACGCCACCCTACGCTCATT
Right flanking sequence: Indices 25228 -- 25727
CACTCCCGTCTCTTCTCTCGGTTCCACCTGCCGTTTTCTCCGATCGAGATCGCCGGCCCCTCTGT
ATCCCTCGTAAACCACCATCATCACACGCCAATCAAATGGCCCGAGGCTCTGCAGACCCCGGCCG
CCCCTGTCCTCTACGGATCAGGCAGCGTGGAGCAGACGCACCCAGACGCAGCGGTAAGCACCACC
TGAGCCCACCATCGCCTCCAAACCAGCACGAAGCACGCAAAAACCAGCCAGTAAATAGCAAAAAC
GAGCCACTAAACAACCAACCGCTTTCTCGCCACCCACCCACACCCACCCACAACCGCCCTACTCC
ATCCCACACCCGCCTACCTCGTTCCCGCTCCCCACTTCCCCAACCTCCGGTGCGGCGTTCCATGC
AGGCGCGGCGAAATCGCCGTACAACAGCCGTTTCCTCTTGACAGCCACCATGGGCATCTTCGGAC
ACAGTGGCCATCGCAAGCCAGCCAAGCTGCTGGTGGGCTACTACG
Found at i:25483 original size:21 final size:21
Alignment explanation
Indices: 25459--25498 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
25449 CACGAAGCAC
*
25459 GCAAAAACCAGCCAGTAAATA
1 GCAAAAACCAGCCACTAAATA
*
25480 GCAAAAACGAGCCACTAAA
1 GCAAAAACCAGCCACTAAA
25499 CAACCAACCG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.53, C:0.25, G:0.15, T:0.07
Consensus pattern (21 bp):
GCAAAAACCAGCCACTAAATA
Left flanking sequence: Indices 24959 -- 25458
TGTAGCCACACAGCCTCGCGGCACCACCCATTGTGGCCACCCACCCTGGCCACCTTTCTTGTGGC
CACCTATCCATTGTCTCTACCCTCTATCTCCAGTCACTGATGCATTTACCCCTTATTCTCCTCGG
ATCAACGGGTATTACCACCAATCACTTAGGAATCCACGTTCACTCACGCCAATCACGCCACCCTA
CGCTCATTCTACGCCACTCACACTACACCACTTCACACTACGCCACTCGCACTACACCACTCACA
CTACACCACCACTCCCGTCTCTTCTCTCGGTTCCACCTGCCGTTTTCTCCGATCGAGATCGCCGG
CCCCTCTGTATCCCTCGTAAACCACCATCATCACACGCCAATCAAATGGCCCGAGGCTCTGCAGA
CCCCGGCCGCCCCTGTCCTCTACGGATCAGGCAGCGTGGAGCAGACGCACCCAGACGCAGCGGTA
AGCACCACCTGAGCCCACCATCGCCTCCAAACCAGCACGAAGCAC
Right flanking sequence: Indices 25499 -- 25998
CAACCAACCGCTTTCTCGCCACCCACCCACACCCACCCACAACCGCCCTACTCCATCCCACACCC
GCCTACCTCGTTCCCGCTCCCCACTTCCCCAACCTCCGGTGCGGCGTTCCATGCAGGCGCGGCGA
AATCGCCGTACAACAGCCGTTTCCTCTTGACAGCCACCATGGGCATCTTCGGACACAGTGGCCAT
CGCAAGCCAGCCAAGCTGCTGGTGGGCTACTACGACCCCACCACGTACAAGTGCCGCCTGCGCTC
GCGGCTGCCGCTGAAGGAGCGCTCGCGCAGCCCCGACGGCAAGACGGTGGCGATCTCGCCCGCCG
TGGAGGTGGTGCTGGACCTGGAGCCCGGCCAGGTGAAGCTCGAGGTGGGCGAGCGTGAGCCCGAG
CTGGACGCCGAGCTTGCCCAGCGGCTCCAGCTCGAGGAGATGCGCAAGGCCGAGGAAAAGGTCCC
CGTCAAGCTCGGGCCCACCGAGGACGAGGACGACGAGACGGTGGC
Found at i:26215 original size:12 final size:12
Alignment explanation
Indices: 26200--26231 Score: 64
Period size: 12 Copynumber: 2.7 Consensus size: 12
26190 ACCTGCTGCT
26200 GCTGCGGCCCGA
1 GCTGCGGCCCGA
26212 GCTGCGGCCCGA
1 GCTGCGGCCCGA
26224 GCTGCGGC
1 GCTGCGGC
26232 TGACGACGCC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.06, C:0.41, G:0.44, T:0.09
Consensus pattern (12 bp):
GCTGCGGCCCGA
Left flanking sequence: Indices 25700 -- 26199
CCAGCCAAGCTGCTGGTGGGCTACTACGACCCCACCACGTACAAGTGCCGCCTGCGCTCGCGGCT
GCCGCTGAAGGAGCGCTCGCGCAGCCCCGACGGCAAGACGGTGGCGATCTCGCCCGCCGTGGAGG
TGGTGCTGGACCTGGAGCCCGGCCAGGTGAAGCTCGAGGTGGGCGAGCGTGAGCCCGAGCTGGAC
GCCGAGCTTGCCCAGCGGCTCCAGCTCGAGGAGATGCGCAAGGCCGAGGAAAAGGTCCCCGTCAA
GCTCGGGCCCACCGAGGACGAGGACGACGAGACGGTGGCCAACACCAAGGCCAACGCCATGCTCT
ACCACTTCACCGACGAGCTGGTGGACATGTATCGCCGCGAAAACACCCTGCTGGACCTCTTGGGC
CGCCTCTACTACGACGACTACGACCTGGACACCCCGGGCGCGCTCTCGGGCACCGCGACGCCGTT
GCTCTCGCCCACCCCGACCGGTGGCAACATGCTGGACCTGCTGCT
Right flanking sequence: Indices 26232 -- 26731
TGACGACGCCGCGGCCCGGGCTTCCCCGGCTCTACTCGCTCGAGCGGGGCGTGCTGTTCGACACC
AGCGACAACGACGCGCGCCGGCTGGTGATCTTCAAGGTCAAGCACCCGCAGTTCAAGTTCCGGCG
CAACAACAAGACGTTTTTGGCCGGGTTCAACCACCTGGCGGAGCTGTTGCGGGCCATCGAGTGGT
TGTTTGACGAGATGGTGGTGCACGGGGACACCATCGTGGTGCTCGAGGTGCTTGAGGAGCGGCGG
TACCAGGGGATCGACCGGGCAGCGGCGCAGAAGGCGTTGGCCACCATCGAGGGGCTCAACCGCAT
CCACAAAAAGAAGGTCAAGCTCATTTTCGAGACGGTGGTGGGCAAGCCCCAGCGGTTGCTCAAGA
CCGCCATCAACGAGTACAACCCGCAGATGATGGTGATGGGCACCAAGCACTACGACCGCAAGATC
CTGAAGCCGTTGTTTGCCAAGGAGCTGTTCTCGAAGCACTTTTTG
Found at i:27375 original size:13 final size:13
Alignment explanation
Indices: 27343--27428 Score: 127
Period size: 13 Copynumber: 6.4 Consensus size: 13
27333 GAAGTTGGGG
27343 AGAAGAAGTAGAGTA
1 AGAAG-AGTAGAG-A
27358 GAGAAGAGTAGAGA
1 -AGAAGAGTAGAGA
*
27372 AGAAGAGTGGAGA
1 AGAAGAGTAGAGA
27385 AGAAGAGTAGAGA
1 AGAAGAGTAGAGA
27398 AGAAGAGTAGAGA
1 AGAAGAGTAGAGA
*
27411 AAAAGAGTAGAGA
1 AGAAGAGTAGAGA
27424 AGAAG
1 AGAAG
27429 GAGGGTGGAG
Statistics
Matches: 66, Mismatches: 4, Indels: 3
0.90 0.05 0.04
Matches are distributed among these distances:
13 53 0.80
14 1 0.02
15 7 0.11
16 5 0.08
ACGTcount: A:0.53, C:0.00, G:0.38, T:0.08
Consensus pattern (13 bp):
AGAAGAGTAGAGA
Left flanking sequence: Indices 26843 -- 27342
GACGTGCTGGGGCTGTACGAGAAGAAGCGCAAGAAGGGGGTGTTCAGCCCCACGGTGCTGCGAGG
GAACTCCTACACCAACTTGGCCCAGTTGACGCCCGACCGAGGCCGTCCCGCGGCTGCACGCGGCA
ACTCGTCCCAGAACTTGGCGGCGATGGTGACCGAGCGCATGGCGGAGCGGGGACGGCTGCCACAG
CCGCCCGGGCTTGCGGCTCGCACGCCTGAGCGCGGACGGTCGCCTGCTCCGCCGCCGGTGGCTGC
CAACGTGCGGCCGCTGCGGTCGCGGTCGCGGTCGCGGCAGCGGTTGCTGAAGATGTTTGGCATCG
GCGAGTGATTATAGAGTATAGAAATGACGAATAATGAAAAGGAAGAGGGGGAAGTAGGGGGAAAG
GGGGAGAGAAGGTAGGGGAGAGGAAGGGAATAGAGAAAATGTAGATTACGGAAGTAGAGGAGAAG
TAGAGTGGAGAAGTGAATTAGAGATGTAGAGTAGAGAAGTTGGGG
Right flanking sequence: Indices 27429 -- 27928
GAGGGTGGAGAACTAAAGTCGGGAAAAAGTAAATTGGAGTGGAAGAACGAAAAGTGGTGGGATGA
TTTCGTGGATTGGCTCATTGTGAGAAACGAAGACAGATTGGTGTAGAGGATGGAGAGTTTACATA
GGACTAACGGGATAAGCCTGAAGAAGTGAAGACCTAAATGGGTGCACAGCTCTAGTATAGAGGAC
TTAAGGGTGAACAATAGGGCAGTGGATTAGGCATGGTCACGAGTGAAAGTGGAACAACTGAATCG
ACGGAAGTGGGGTATGAACTGAAACGGTTAAGCGAAAAAAATGTGAGACACCGAAGCCAAGCAAC
TCACCGTAATTTGAGATTGACGTCAACGTAAACCCGAGCGTAAGAAAATAACTCAAATCCCGAAA
ACCACCGAGAAATTCCGGAGCGAAACACACGTGGCCACCCCGTTGACTATCGTACACGATACGAC
ACTGCCTGCTACTGCCTACCTGCTACTGCCTCCATCCCTACCCCC
Found at i:27402 original size:39 final size:38
Alignment explanation
Indices: 27292--27426 Score: 132
Period size: 39 Copynumber: 3.5 Consensus size: 38
27282 GGAAGTAGAG
* * * * *
27292 GAGAAGTAGAGTGGAGAAGTGAATTAGAGATGTAGAGTA
1 GAGAAGAAGAGTGGAGAAGAG-AGTAGAGAAGAAGAGTA
**
27331 GAGAAGTTG-G-GGAGAAGA-AGTAGAGTAGAGAAGAGTA
1 GAGAAGAAGAGTGGAGAAGAGAGTAGAG-A-AGAAGAGTA
27368 GAGAAGAAGAGTGGAGAAGAAGAGTAGAGAAGAAGAGTA
1 GAGAAGAAGAGTGGAGAAG-AGAGTAGAGAAGAAGAGTA
* *
27407 GAGAAAAAGAGTAGAGAAGA
1 GAGAAGAAGAGTGGAGAAGA
27427 AGGAGGGTGG
Statistics
Matches: 81, Mismatches: 9, Indels: 13
0.79 0.09 0.13
Matches are distributed among these distances:
35 6 0.07
36 1 0.01
37 21 0.26
38 3 0.04
39 41 0.51
40 2 0.02
41 7 0.09
ACGTcount: A:0.47, C:0.00, G:0.40, T:0.13
Consensus pattern (38 bp):
GAGAAGAAGAGTGGAGAAGAGAGTAGAGAAGAAGAGTA
Left flanking sequence: Indices 26792 -- 27291
CAGCACCCGGTGGACGGGCCCGACTACTTTGAGCACTGGTTGCGCGACATCGACGTGCTGGGGCT
GTACGAGAAGAAGCGCAAGAAGGGGGTGTTCAGCCCCACGGTGCTGCGAGGGAACTCCTACACCA
ACTTGGCCCAGTTGACGCCCGACCGAGGCCGTCCCGCGGCTGCACGCGGCAACTCGTCCCAGAAC
TTGGCGGCGATGGTGACCGAGCGCATGGCGGAGCGGGGACGGCTGCCACAGCCGCCCGGGCTTGC
GGCTCGCACGCCTGAGCGCGGACGGTCGCCTGCTCCGCCGCCGGTGGCTGCCAACGTGCGGCCGC
TGCGGTCGCGGTCGCGGTCGCGGCAGCGGTTGCTGAAGATGTTTGGCATCGGCGAGTGATTATAG
AGTATAGAAATGACGAATAATGAAAAGGAAGAGGGGGAAGTAGGGGGAAAGGGGGAGAGAAGGTA
GGGGAGAGGAAGGGAATAGAGAAAATGTAGATTACGGAAGTAGAG
Right flanking sequence: Indices 27427 -- 27926
AGGAGGGTGGAGAACTAAAGTCGGGAAAAAGTAAATTGGAGTGGAAGAACGAAAAGTGGTGGGAT
GATTTCGTGGATTGGCTCATTGTGAGAAACGAAGACAGATTGGTGTAGAGGATGGAGAGTTTACA
TAGGACTAACGGGATAAGCCTGAAGAAGTGAAGACCTAAATGGGTGCACAGCTCTAGTATAGAGG
ACTTAAGGGTGAACAATAGGGCAGTGGATTAGGCATGGTCACGAGTGAAAGTGGAACAACTGAAT
CGACGGAAGTGGGGTATGAACTGAAACGGTTAAGCGAAAAAAATGTGAGACACCGAAGCCAAGCA
ACTCACCGTAATTTGAGATTGACGTCAACGTAAACCCGAGCGTAAGAAAATAACTCAAATCCCGA
AAACCACCGAGAAATTCCGGAGCGAAACACACGTGGCCACCCCGTTGACTATCGTACACGATACG
ACACTGCCTGCTACTGCCTACCTGCTACTGCCTCCATCCCTACCC
Found at i:27907 original size:14 final size:14
Alignment explanation
Indices: 27888--27914 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
27878 TACGACACTG
27888 CCTGCTACTGCCTA
1 CCTGCTACTGCCTA
27902 CCTGCTACTGCCT
1 CCTGCTACTGCCT
27915 CCATCCCTAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.11, C:0.44, G:0.15, T:0.30
Consensus pattern (14 bp):
CCTGCTACTGCCTA
Left flanking sequence: Indices 27388 -- 27887
AGAGTAGAGAAGAAGAGTAGAGAAAAAGAGTAGAGAAGAAGGAGGGTGGAGAACTAAAGTCGGGA
AAAAGTAAATTGGAGTGGAAGAACGAAAAGTGGTGGGATGATTTCGTGGATTGGCTCATTGTGAG
AAACGAAGACAGATTGGTGTAGAGGATGGAGAGTTTACATAGGACTAACGGGATAAGCCTGAAGA
AGTGAAGACCTAAATGGGTGCACAGCTCTAGTATAGAGGACTTAAGGGTGAACAATAGGGCAGTG
GATTAGGCATGGTCACGAGTGAAAGTGGAACAACTGAATCGACGGAAGTGGGGTATGAACTGAAA
CGGTTAAGCGAAAAAAATGTGAGACACCGAAGCCAAGCAACTCACCGTAATTTGAGATTGACGTC
AACGTAAACCCGAGCGTAAGAAAATAACTCAAATCCCGAAAACCACCGAGAAATTCCGGAGCGAA
ACACACGTGGCCACCCCGTTGACTATCGTACACGATACGACACTG
Right flanking sequence: Indices 27915 -- 28414
CCATCCCTACCCCCACCGCTCTTCCCATTCGCCTCGTCAAAAGCAACCCAAAAAGAAATTTCGGT
AATAACGCGCAGCAAGGTCACACGTCGGACACCGCCAGCGACAGGTCACAACAGCGCTCGTCTGA
CCCGCCAACGGCAGCCACACCGCCCCGGGGGTTCGCTCGTGTGAGCACACCCCATTGTGGACCCG
CGGTCCCGAGTCTCCCGAACCCCTATTCGCCAGGGTGGCTAATGACAATTATCGCGCATAGAAAT
AACCTGTCAAAGGCACAGAACAAATCGGAGTGCGGACACCGGAGCAAGCACAATGTTCTCCGGGG
CGCTCAATTACCCACCTGTCACCACCCTCGCTTACCTCGCTTCGGCTACGCGAGGGTTCTCCAGG
GTCCGACCCGTCATTCTAGCCCCGCGATGAGATTTAAGCTATTTTTTTTTTCATGCATGATTGCA
TTGCGTTATCGAAAGAGTTACCGCATTCGTCGAGTCGATGGCTGT
Found at i:30108 original size:30 final size:31
Alignment explanation
Indices: 30064--30124 Score: 115
Period size: 30 Copynumber: 2.0 Consensus size: 31
30054 GCGGCCCAAA
30064 ACGGCCATTACTATGCACTAATGCCTATAGC
1 ACGGCCATTACTATGCACTAATGCCTATAGC
30095 ACGGCCA-TACTATGCACTAATGCCTATAGC
1 ACGGCCATTACTATGCACTAATGCCTATAGC
30125 CCAAAACAGC
Statistics
Matches: 30, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
30 23 0.77
31 7 0.23
ACGTcount: A:0.30, C:0.30, G:0.16, T:0.25
Consensus pattern (31 bp):
ACGGCCATTACTATGCACTAATGCCTATAGC
Left flanking sequence: Indices 29564 -- 30063
TACTCGATGTACGCCCAGTACCCGCCAAACCCAAGCGCAGAAAGCCCCAATTGCTCGCCAAACGA
CACCTGCCGCCGCGGATAGCACCCCATGACGTACACAAACGGGAACAAGTGGAACGAGCAATCGT
TGAGCAACAGCACCTGGTAGTCGTCGGTGTTCAACAGCCCGGCAGCAAAGGTGATGAAGTACCAG
TAGGCCACGGTGATCTCCAACTCGAGCGACCCCACGAGGTAGTACAACCGCGTCAGCCGGATCCC
AAGGTTGTTGAGCACCGCATACACAAGCGAGAGAAACACCCCGCAATTGGTGAGAAACTGGAAGT
TGCCTCCAGCAGCAAGGTGTGGGGGAAGCGGGAGCGCAAAAAAGCACTGGTACACGCCCCACCCG
ATCAGCAACAACCCAAACAAGTGCCACAAGTTCATGTTTTTCATTGGCTGGTGTGAGTCCATTAT
GCACTAACTGTCACACCCTACATACGCGGCCCAAAGCGGCCCAAA
Right flanking sequence: Indices 30125 -- 30624
CCAAAACAGCCATACCATACACTAATCCCTATAGCCCAAACGGCCATACCATACACTAATCCCTA
TCTATGCTTGACCAGATTCAACGCCACCTGGACGATGTGGCGGAACCGGGCACCCCCGAGCGGGG
TGCCGCCGTACCACCGGGTGACGATCACCATGGTGTTTACTAGGTTGTGGCGCAACACCACCCCC
TCGAGGAGCCGGGAGCCCGCTCCCTTCTCGCCGTTGTCGTCGAACCCCTGGCGGTCCTGCGACCC
CGTGGTACACCGCCACGCGATCATGTGGGGGTGCGAGGCCCGTTTCACCGCCCGGTTCTCGTGCT
GGAACCGCGCTAGGAGGGTGGGGATCTCGTCGGGCGAGGTGAGCGCCACGTGGAACCCCTGGAAC
CGCGACTTGCGGTCGGTGACTATGCTCAGAGGAAACCAGTTGAGCGGCTTCATCTCTGTCTAGCG
TGTTCCCGAGTTCGTGCGCCTGAGTTTGTGTCCCGAGTTTGTGTG
Found at i:30176 original size:34 final size:35
Alignment explanation
Indices: 30057--30190 Score: 154
Period size: 34 Copynumber: 4.0 Consensus size: 35
30047 GCCCAAAGCG
* * *
30057 GCCCAAAACGGCCATTACTATGCACTAATGCCTATA
1 GCCCAAAACGGCCA-TACCATACACTAATCCCTATA
* * *
30093 G--C---ACGGCCATACTATGCACTAATGCCTATA
1 GCCCAAAACGGCCATACCATACACTAATCCCTATA
*
30123 GCCCAAAACAGCCATACCATACACTAATCCCTATA
1 GCCCAAAACGGCCATACCATACACTAATCCCTATA
30158 GCCC-AAACGGCCATACCATACACTAATCCCTAT
1 GCCCAAAACGGCCATACCATACACTAATCCCTAT
30191 CTATGCTTGA
Statistics
Matches: 88, Mismatches: 5, Indels: 12
0.84 0.05 0.11
Matches are distributed among these distances:
30 22 0.25
31 7 0.08
32 1 0.01
34 29 0.33
35 28 0.32
36 1 0.01
ACGTcount: A:0.34, C:0.34, G:0.11, T:0.20
Consensus pattern (35 bp):
GCCCAAAACGGCCATACCATACACTAATCCCTATA
Left flanking sequence: Indices 29557 -- 30056
GTGCAAGTACTCGATGTACGCCCAGTACCCGCCAAACCCAAGCGCAGAAAGCCCCAATTGCTCGC
CAAACGACACCTGCCGCCGCGGATAGCACCCCATGACGTACACAAACGGGAACAAGTGGAACGAG
CAATCGTTGAGCAACAGCACCTGGTAGTCGTCGGTGTTCAACAGCCCGGCAGCAAAGGTGATGAA
GTACCAGTAGGCCACGGTGATCTCCAACTCGAGCGACCCCACGAGGTAGTACAACCGCGTCAGCC
GGATCCCAAGGTTGTTGAGCACCGCATACACAAGCGAGAGAAACACCCCGCAATTGGTGAGAAAC
TGGAAGTTGCCTCCAGCAGCAAGGTGTGGGGGAAGCGGGAGCGCAAAAAAGCACTGGTACACGCC
CCACCCGATCAGCAACAACCCAAACAAGTGCCACAAGTTCATGTTTTTCATTGGCTGGTGTGAGT
CCATTATGCACTAACTGTCACACCCTACATACGCGGCCCAAAGCG
Right flanking sequence: Indices 30191 -- 30690
CTATGCTTGACCAGATTCAACGCCACCTGGACGATGTGGCGGAACCGGGCACCCCCGAGCGGGGT
GCCGCCGTACCACCGGGTGACGATCACCATGGTGTTTACTAGGTTGTGGCGCAACACCACCCCCT
CGAGGAGCCGGGAGCCCGCTCCCTTCTCGCCGTTGTCGTCGAACCCCTGGCGGTCCTGCGACCCC
GTGGTACACCGCCACGCGATCATGTGGGGGTGCGAGGCCCGTTTCACCGCCCGGTTCTCGTGCTG
GAACCGCGCTAGGAGGGTGGGGATCTCGTCGGGCGAGGTGAGCGCCACGTGGAACCCCTGGAACC
GCGACTTGCGGTCGGTGACTATGCTCAGAGGAAACCAGTTGAGCGGCTTCATCTCTGTCTAGCGT
GTTCCCGAGTTCGTGCGCCTGAGTTTGTGTCCCGAGTTTGTGTGCCTGAGTTCGTGTGCCCGAGT
TCGTTTCGCGTGGTGGGACGATGCTCTGCTGCACGGGTGCGCACA
Found at i:30604 original size:14 final size:14
Alignment explanation
Indices: 30587--30649 Score: 58
Period size: 14 Copynumber: 4.6 Consensus size: 14
30577 GCGTGTTCCC
30587 GAGTTCGTGCGCCT
1 GAGTTCGTGCGCCT
*
30601 GAGTTTGTGTC-CC-
1 GAGTTCGTG-CGCCT
* *
30614 GAGTTTGTGTGCCT
1 GAGTTCGTGCGCCT
* *
30628 GAGTTCGTGTGCCC
1 GAGTTCGTGCGCCT
30642 GAGTTCGT
1 GAGTTCGT
30650 TTCGCGTGGT
Statistics
Matches: 42, Mismatches: 4, Indels: 6
0.81 0.08 0.12
Matches are distributed among these distances:
13 11 0.26
14 30 0.71
15 1 0.02
ACGTcount: A:0.08, C:0.22, G:0.35, T:0.35
Consensus pattern (14 bp):
GAGTTCGTGCGCCT
Left flanking sequence: Indices 30087 -- 30586
CCTATAGCACGGCCATACTATGCACTAATGCCTATAGCCCAAAACAGCCATACCATACACTAATC
CCTATAGCCCAAACGGCCATACCATACACTAATCCCTATCTATGCTTGACCAGATTCAACGCCAC
CTGGACGATGTGGCGGAACCGGGCACCCCCGAGCGGGGTGCCGCCGTACCACCGGGTGACGATCA
CCATGGTGTTTACTAGGTTGTGGCGCAACACCACCCCCTCGAGGAGCCGGGAGCCCGCTCCCTTC
TCGCCGTTGTCGTCGAACCCCTGGCGGTCCTGCGACCCCGTGGTACACCGCCACGCGATCATGTG
GGGGTGCGAGGCCCGTTTCACCGCCCGGTTCTCGTGCTGGAACCGCGCTAGGAGGGTGGGGATCT
CGTCGGGCGAGGTGAGCGCCACGTGGAACCCCTGGAACCGCGACTTGCGGTCGGTGACTATGCTC
AGAGGAAACCAGTTGAGCGGCTTCATCTCTGTCTAGCGTGTTCCC
Right flanking sequence: Indices 30650 -- 31149
TTCGCGTGGTGGGACGATGCTCTGCTGCACGGGTGCGCACATAAGAATTTTTCATTTCACCACGG
ACCCGGACTCGACCACCATGATCTACTTGAAGTCGCTCCTCAACGTGATTGACAATAGCGGTGCT
CAGATCGTGGAGTGTATCAAGGTGCTTCGCCACGGCCCCCGCAACTTTGCCAAGGTGGGTGACCA
GATCACCGTGGTTGTCAAAAAGGCCAAGCCGTTGCTGAGTGAAATCACCGGGCAGGCTGCTTCCA
ACCGGGTGAAGCGCCGGGACATCTGCCGGGCGATCGTTGTGCGGACCAAGGCTCCGTTCAAGCGT
CCCGATGGGTCGGTGGTGCGGTTCGACGACAACGCGTGTGTGTTGATCAACAAGCTGGGCGACCC
GCTCGGGACCCGTGTGGGTGGGGTGGTTGCCAAGGAGTTGCGCGAGTTGGAGTACAACAAGATCG
TCGCGCTTGCCCCCAAGACGTTTTAGGCGTTGCTGTATATAGTCG
Found at i:30618 original size:27 final size:27
Alignment explanation
Indices: 30578--30649 Score: 99
Period size: 27 Copynumber: 2.6 Consensus size: 27
30568 CTCTGTCTAG
30578 CGTGTTCCCGAGTTCGTGCGCCTGAGTT
1 CGTG-TCCCGAGTTCGTGCGCCTGAGTT
* * *
30606 TGTGTCCCGAGTTTGTGTGCCTGAGTT
1 CGTGTCCCGAGTTCGTGCGCCTGAGTT
30633 CGTGTGCCCGAGTTCGT
1 CGTGT-CCCGAGTTCGT
30650 TTCGCGTGGT
Statistics
Matches: 38, Mismatches: 5, Indels: 2
0.84 0.11 0.04
Matches are distributed among these distances:
27 25 0.66
28 13 0.34
ACGTcount: A:0.07, C:0.25, G:0.33, T:0.35
Consensus pattern (27 bp):
CGTGTCCCGAGTTCGTGCGCCTGAGTT
Left flanking sequence: Indices 30078 -- 30577
GCACTAATGCCTATAGCACGGCCATACTATGCACTAATGCCTATAGCCCAAAACAGCCATACCAT
ACACTAATCCCTATAGCCCAAACGGCCATACCATACACTAATCCCTATCTATGCTTGACCAGATT
CAACGCCACCTGGACGATGTGGCGGAACCGGGCACCCCCGAGCGGGGTGCCGCCGTACCACCGGG
TGACGATCACCATGGTGTTTACTAGGTTGTGGCGCAACACCACCCCCTCGAGGAGCCGGGAGCCC
GCTCCCTTCTCGCCGTTGTCGTCGAACCCCTGGCGGTCCTGCGACCCCGTGGTACACCGCCACGC
GATCATGTGGGGGTGCGAGGCCCGTTTCACCGCCCGGTTCTCGTGCTGGAACCGCGCTAGGAGGG
TGGGGATCTCGTCGGGCGAGGTGAGCGCCACGTGGAACCCCTGGAACCGCGACTTGCGGTCGGTG
ACTATGCTCAGAGGAAACCAGTTGAGCGGCTTCATCTCTGTCTAG
Right flanking sequence: Indices 30650 -- 31149
TTCGCGTGGTGGGACGATGCTCTGCTGCACGGGTGCGCACATAAGAATTTTTCATTTCACCACGG
ACCCGGACTCGACCACCATGATCTACTTGAAGTCGCTCCTCAACGTGATTGACAATAGCGGTGCT
CAGATCGTGGAGTGTATCAAGGTGCTTCGCCACGGCCCCCGCAACTTTGCCAAGGTGGGTGACCA
GATCACCGTGGTTGTCAAAAAGGCCAAGCCGTTGCTGAGTGAAATCACCGGGCAGGCTGCTTCCA
ACCGGGTGAAGCGCCGGGACATCTGCCGGGCGATCGTTGTGCGGACCAAGGCTCCGTTCAAGCGT
CCCGATGGGTCGGTGGTGCGGTTCGACGACAACGCGTGTGTGTTGATCAACAAGCTGGGCGACCC
GCTCGGGACCCGTGTGGGTGGGGTGGTTGCCAAGGAGTTGCGCGAGTTGGAGTACAACAAGATCG
TCGCGCTTGCCCCCAAGACGTTTTAGGCGTTGCTGTATATAGTCG
Found at i:31286 original size:8 final size:8
Alignment explanation
Indices: 31275--31328 Score: 67
Period size: 8 Copynumber: 6.9 Consensus size: 8
31265 TGGCTAGATG
31275 GTTGACTT
1 GTTGACTT
31283 GTTGACTT
1 GTTGACTT
31291 -TTGACTT
1 GTTGACTT
*
31298 GTTGACTG
1 GTTGACTT
*
31306 GTTGACTG
1 GTTGACTT
31314 GTTGA-TT
1 GTTGACTT
31321 GGTTGACT
1 -GTTGACT
31329 AGATGGTGGT
Statistics
Matches: 41, Mismatches: 2, Indels: 5
0.85 0.04 0.10
Matches are distributed among these distances:
7 8 0.20
8 32 0.78
9 1 0.02
ACGTcount: A:0.13, C:0.11, G:0.30, T:0.46
Consensus pattern (8 bp):
GTTGACTT
Left flanking sequence: Indices 30775 -- 31274
GTGCTCAGATCGTGGAGTGTATCAAGGTGCTTCGCCACGGCCCCCGCAACTTTGCCAAGGTGGGT
GACCAGATCACCGTGGTTGTCAAAAAGGCCAAGCCGTTGCTGAGTGAAATCACCGGGCAGGCTGC
TTCCAACCGGGTGAAGCGCCGGGACATCTGCCGGGCGATCGTTGTGCGGACCAAGGCTCCGTTCA
AGCGTCCCGATGGGTCGGTGGTGCGGTTCGACGACAACGCGTGTGTGTTGATCAACAAGCTGGGC
GACCCGCTCGGGACCCGTGTGGGTGGGGTGGTTGCCAAGGAGTTGCGCGAGTTGGAGTACAACAA
GATCGTCGCGCTTGCCCCCAAGACGTTTTAGGCGTTGCTGTATATAGTCGGGCACTAGCATTGTA
TATTAGAATGGATCGTTTGCATAAAGGAGGGACAGGTGGAATGAGTGGAATGGTTGGGGCAGTAG
GGAGACAGGTAGGTTGATTGTTTTTGCTGGCTGGTTGGCTAGATG
Right flanking sequence: Indices 31329 -- 31828
AGATGGTGGTTGAATAGATCTTGACTAGATGGTTAGCTAGACAGATGGTTAGCTAGACAGATGGT
TAGCTAGACAGATGGTTAGCTAGACAGATGGTTAGCTAAATGGTCAACCGTATGGTTGGCTAGAC
AGATGGTTGACTAGATAGTTGACTGGTTGCCTAGATGGTGACCAGACGGTTGACCGTATGGTTTG
CCACATGTTTCTCTACACAGGTTGGTTGACAGGTCATGTGACGAATACTTGGCTAATTGACCAGC
TTAGAGACCAGGCGCCTACGATTCTTAGTACTTGAGTATATTAGGTAAGTTTACTGACTCCTTTG
GCTGGCTCCACGTAGTTCGGTTGACTAGAAAATACTATATTTTGGACGAGCAGCAAGAGGCCATA
AAATGTCTCTGTGTTTGACAATTCTGCTTCAGAATGCGTCAGATGGCATTGACACAGCTCAGTGC
ATCATTCATATGCTTTTGCTGGCTGTGCCATTCGTCTGGCTGTGT
Found at i:31312 original size:16 final size:16
Alignment explanation
Indices: 31273--31328 Score: 78
Period size: 16 Copynumber: 3.6 Consensus size: 16
31263 GTTGGCTAGA
31273 TGGTTGACTTGTTGAC
1 TGGTTGACTTGTTGAC
*
31289 T-TTTGACTTGTTGAC
1 TGGTTGACTTGTTGAC
* *
31304 TGGTTGACTGGTTGAT
1 TGGTTGACTTGTTGAC
31320 TGGTTGACT
1 TGGTTGACT
31329 AGATGGTGGT
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
15 14 0.40
16 21 0.60
ACGTcount: A:0.12, C:0.11, G:0.30, T:0.46
Consensus pattern (16 bp):
TGGTTGACTTGTTGAC
Left flanking sequence: Indices 30773 -- 31272
CGGTGCTCAGATCGTGGAGTGTATCAAGGTGCTTCGCCACGGCCCCCGCAACTTTGCCAAGGTGG
GTGACCAGATCACCGTGGTTGTCAAAAAGGCCAAGCCGTTGCTGAGTGAAATCACCGGGCAGGCT
GCTTCCAACCGGGTGAAGCGCCGGGACATCTGCCGGGCGATCGTTGTGCGGACCAAGGCTCCGTT
CAAGCGTCCCGATGGGTCGGTGGTGCGGTTCGACGACAACGCGTGTGTGTTGATCAACAAGCTGG
GCGACCCGCTCGGGACCCGTGTGGGTGGGGTGGTTGCCAAGGAGTTGCGCGAGTTGGAGTACAAC
AAGATCGTCGCGCTTGCCCCCAAGACGTTTTAGGCGTTGCTGTATATAGTCGGGCACTAGCATTG
TATATTAGAATGGATCGTTTGCATAAAGGAGGGACAGGTGGAATGAGTGGAATGGTTGGGGCAGT
AGGGAGACAGGTAGGTTGATTGTTTTTGCTGGCTGGTTGGCTAGA
Right flanking sequence: Indices 31329 -- 31828
AGATGGTGGTTGAATAGATCTTGACTAGATGGTTAGCTAGACAGATGGTTAGCTAGACAGATGGT
TAGCTAGACAGATGGTTAGCTAGACAGATGGTTAGCTAAATGGTCAACCGTATGGTTGGCTAGAC
AGATGGTTGACTAGATAGTTGACTGGTTGCCTAGATGGTGACCAGACGGTTGACCGTATGGTTTG
CCACATGTTTCTCTACACAGGTTGGTTGACAGGTCATGTGACGAATACTTGGCTAATTGACCAGC
TTAGAGACCAGGCGCCTACGATTCTTAGTACTTGAGTATATTAGGTAAGTTTACTGACTCCTTTG
GCTGGCTCCACGTAGTTCGGTTGACTAGAAAATACTATATTTTGGACGAGCAGCAAGAGGCCATA
AAATGTCTCTGTGTTTGACAATTCTGCTTCAGAATGCGTCAGATGGCATTGACACAGCTCAGTGC
ATCATTCATATGCTTTTGCTGGCTGTGCCATTCGTCTGGCTGTGT
Found at i:31376 original size:16 final size:16
Alignment explanation
Indices: 31355--31431 Score: 154
Period size: 16 Copynumber: 4.8 Consensus size: 16
31345 GATCTTGACT
31355 AGATGGTTAGCTAGAC
1 AGATGGTTAGCTAGAC
31371 AGATGGTTAGCTAGAC
1 AGATGGTTAGCTAGAC
31387 AGATGGTTAGCTAGAC
1 AGATGGTTAGCTAGAC
31403 AGATGGTTAGCTAGAC
1 AGATGGTTAGCTAGAC
31419 AGATGGTTAGCTA
1 AGATGGTTAGCTA
31432 AATGGTCAAC
Statistics
Matches: 61, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 61 1.00
ACGTcount: A:0.31, C:0.12, G:0.31, T:0.26
Consensus pattern (16 bp):
AGATGGTTAGCTAGAC
Left flanking sequence: Indices 30855 -- 31354
GTTGTCAAAAAGGCCAAGCCGTTGCTGAGTGAAATCACCGGGCAGGCTGCTTCCAACCGGGTGAA
GCGCCGGGACATCTGCCGGGCGATCGTTGTGCGGACCAAGGCTCCGTTCAAGCGTCCCGATGGGT
CGGTGGTGCGGTTCGACGACAACGCGTGTGTGTTGATCAACAAGCTGGGCGACCCGCTCGGGACC
CGTGTGGGTGGGGTGGTTGCCAAGGAGTTGCGCGAGTTGGAGTACAACAAGATCGTCGCGCTTGC
CCCCAAGACGTTTTAGGCGTTGCTGTATATAGTCGGGCACTAGCATTGTATATTAGAATGGATCG
TTTGCATAAAGGAGGGACAGGTGGAATGAGTGGAATGGTTGGGGCAGTAGGGAGACAGGTAGGTT
GATTGTTTTTGCTGGCTGGTTGGCTAGATGGTTGACTTGTTGACTTTTGACTTGTTGACTGGTTG
ACTGGTTGATTGGTTGACTAGATGGTGGTTGAATAGATCTTGACT
Right flanking sequence: Indices 31432 -- 31931
AATGGTCAACCGTATGGTTGGCTAGACAGATGGTTGACTAGATAGTTGACTGGTTGCCTAGATGG
TGACCAGACGGTTGACCGTATGGTTTGCCACATGTTTCTCTACACAGGTTGGTTGACAGGTCATG
TGACGAATACTTGGCTAATTGACCAGCTTAGAGACCAGGCGCCTACGATTCTTAGTACTTGAGTA
TATTAGGTAAGTTTACTGACTCCTTTGGCTGGCTCCACGTAGTTCGGTTGACTAGAAAATACTAT
ATTTTGGACGAGCAGCAAGAGGCCATAAAATGTCTCTGTGTTTGACAATTCTGCTTCAGAATGCG
TCAGATGGCATTGACACAGCTCAGTGCATCATTCATATGCTTTTGCTGGCTGTGCCATTCGTCTG
GCTGTGTATTCGTCTGGCTGTGTATTCGTCTGGCTGTGCTATTCATCTTTTTGTAATATTCGTCT
AACAGTGCCATTCGTCTGACTGTGCTATTCGTCTAATTGTTCTAT
Found at i:31834 original size:16 final size:17
Alignment explanation
Indices: 31802--31920 Score: 116
Period size: 17 Copynumber: 7.1 Consensus size: 17
31792 TATGCTTTTG
*
31802 CTGGCTGTGCCATTCGT
1 CTGGCTGTGCTATTCGT
31819 CTGGCTGTG-TATTCGT
1 CTGGCTGTGCTATTCGT
31835 CTGGCTGTG-TATTCGT
1 CTGGCTGTGCTATTCGT
*
31851 CTGGCTGTGCTATTCAT
1 CTGGCTGTGCTATTCGT
*** **
31868 CTTTTTGTAATATTCGT
1 CTGGCTGTGCTATTCGT
** * *
31885 CTAACAGTGCCATTCGT
1 CTGGCTGTGCTATTCGT
*
31902 CTGACTGTGCTATTCGT
1 CTGGCTGTGCTATTCGT
31919 CT
1 CT
31921 AATTGTTCTA
Statistics
Matches: 83, Mismatches: 18, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
16 31 0.37
17 52 0.63
ACGTcount: A:0.12, C:0.23, G:0.24, T:0.42
Consensus pattern (17 bp):
CTGGCTGTGCTATTCGT
Left flanking sequence: Indices 31302 -- 31801
ACTGGTTGACTGGTTGATTGGTTGACTAGATGGTGGTTGAATAGATCTTGACTAGATGGTTAGCT
AGACAGATGGTTAGCTAGACAGATGGTTAGCTAGACAGATGGTTAGCTAGACAGATGGTTAGCTA
AATGGTCAACCGTATGGTTGGCTAGACAGATGGTTGACTAGATAGTTGACTGGTTGCCTAGATGG
TGACCAGACGGTTGACCGTATGGTTTGCCACATGTTTCTCTACACAGGTTGGTTGACAGGTCATG
TGACGAATACTTGGCTAATTGACCAGCTTAGAGACCAGGCGCCTACGATTCTTAGTACTTGAGTA
TATTAGGTAAGTTTACTGACTCCTTTGGCTGGCTCCACGTAGTTCGGTTGACTAGAAAATACTAT
ATTTTGGACGAGCAGCAAGAGGCCATAAAATGTCTCTGTGTTTGACAATTCTGCTTCAGAATGCG
TCAGATGGCATTGACACAGCTCAGTGCATCATTCATATGCTTTTG
Right flanking sequence: Indices 31921 -- 32420
AATTGTTCTATTCAGTTGGTGTGCCTGGACACCTAAAACATAAGTGCCCGCTAGTATCACCTAAT
GTCCCTCTCCTTAGGCCGCCACCCCCTGTAGATGCAACTCTGGTCCCAAGGGGTCGCCTAACTAC
ACTACACCTGATGCACCTTGTCCCAAGGGGTCGCCCTAACTACACCTTACACCCGATGCAACCTG
GACCAACTACCATGGCTCGATATCTTTGCGTTGACGACTTTAATGCGTATTATTAGTGTGTTCGG
ATGCAAAGGCATTGTGACCCAACTCTAATTCGATTGCTCCAAAGAACACCCTGTGGCCACAGCGA
TACTCGAGCTCGCTTAGTCGACCGTCGATCATGCACCACCACCAAAAGTGTTTTCTCACCTCGCA
AGGTCGCTATAGTCGCTAAAACCACCCGGGAAAACGCACCCGACACCAGGCGCGGCCCGACACGC
CCGTCTCGTCGTCCGACTCTGCTCGTCCGACGTCTTCACCTTACA
Found at i:31853 original size:32 final size:34
Alignment explanation
Indices: 31802--31865 Score: 105
Period size: 32 Copynumber: 1.9 Consensus size: 34
31792 TATGCTTTTG
31802 CTGGCTGTGCCATTCGTCTGGCTGTG-TATTCGT
1 CTGGCTGTGCCATTCGTCTGGCTGTGCTATTCGT
*
31835 CTGGCTGTG-TATTCGTCTGGCTGTGCTATTC
1 CTGGCTGTGCCATTCGTCTGGCTGTGCTATTC
31866 ATCTTTTTGT
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
32 15 0.52
33 14 0.48
ACGTcount: A:0.06, C:0.23, G:0.30, T:0.41
Consensus pattern (34 bp):
CTGGCTGTGCCATTCGTCTGGCTGTGCTATTCGT
Left flanking sequence: Indices 31302 -- 31801
ACTGGTTGACTGGTTGATTGGTTGACTAGATGGTGGTTGAATAGATCTTGACTAGATGGTTAGCT
AGACAGATGGTTAGCTAGACAGATGGTTAGCTAGACAGATGGTTAGCTAGACAGATGGTTAGCTA
AATGGTCAACCGTATGGTTGGCTAGACAGATGGTTGACTAGATAGTTGACTGGTTGCCTAGATGG
TGACCAGACGGTTGACCGTATGGTTTGCCACATGTTTCTCTACACAGGTTGGTTGACAGGTCATG
TGACGAATACTTGGCTAATTGACCAGCTTAGAGACCAGGCGCCTACGATTCTTAGTACTTGAGTA
TATTAGGTAAGTTTACTGACTCCTTTGGCTGGCTCCACGTAGTTCGGTTGACTAGAAAATACTAT
ATTTTGGACGAGCAGCAAGAGGCCATAAAATGTCTCTGTGTTTGACAATTCTGCTTCAGAATGCG
TCAGATGGCATTGACACAGCTCAGTGCATCATTCATATGCTTTTG
Right flanking sequence: Indices 31866 -- 32365
ATCTTTTTGTAATATTCGTCTAACAGTGCCATTCGTCTGACTGTGCTATTCGTCTAATTGTTCTA
TTCAGTTGGTGTGCCTGGACACCTAAAACATAAGTGCCCGCTAGTATCACCTAATGTCCCTCTCC
TTAGGCCGCCACCCCCTGTAGATGCAACTCTGGTCCCAAGGGGTCGCCTAACTACACTACACCTG
ATGCACCTTGTCCCAAGGGGTCGCCCTAACTACACCTTACACCCGATGCAACCTGGACCAACTAC
CATGGCTCGATATCTTTGCGTTGACGACTTTAATGCGTATTATTAGTGTGTTCGGATGCAAAGGC
ATTGTGACCCAACTCTAATTCGATTGCTCCAAAGAACACCCTGTGGCCACAGCGATACTCGAGCT
CGCTTAGTCGACCGTCGATCATGCACCACCACCAAAAGTGTTTTCTCACCTCGCAAGGTCGCTAT
AGTCGCTAAAACCACCCGGGAAAACGCACCCGACACCAGGCGCGG
Found at i:31931 original size:17 final size:17
Alignment explanation
Indices: 31806--31933 Score: 80
Period size: 17 Copynumber: 7.6 Consensus size: 17
31796 CTTTTGCTGG
* **
31806 CTGTGCCATTCGTCTGG
1 CTGTGCTATTCGTCTAA
**
31823 CTGTG-TATTCGTCTGG
1 CTGTGCTATTCGTCTAA
**
31839 CTGTG-TATTCGTCTGG
1 CTGTGCTATTCGTCTAA
* **
31855 CTGTGCTATTCATCTTT
1 CTGTGCTATTCGTCTAA
* **
31872 TTGTAATATTCGTCTAA
1 CTGTGCTATTCGTCTAA
* * *
31889 CAGTGCCATTCGTCTGA
1 CTGTGCTATTCGTCTAA
31906 CTGTGCTATTCGTCTAA
1 CTGTGCTATTCGTCTAA
* *
31923 TTGTTCTATTC
1 CTGTGCTATTC
31934 AGTTGGTGTG
Statistics
Matches: 89, Mismatches: 21, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
16 31 0.35
17 58 0.65
ACGTcount: A:0.13, C:0.22, G:0.21, T:0.44
Consensus pattern (17 bp):
CTGTGCTATTCGTCTAA
Left flanking sequence: Indices 31306 -- 31805
GTTGACTGGTTGATTGGTTGACTAGATGGTGGTTGAATAGATCTTGACTAGATGGTTAGCTAGAC
AGATGGTTAGCTAGACAGATGGTTAGCTAGACAGATGGTTAGCTAGACAGATGGTTAGCTAAATG
GTCAACCGTATGGTTGGCTAGACAGATGGTTGACTAGATAGTTGACTGGTTGCCTAGATGGTGAC
CAGACGGTTGACCGTATGGTTTGCCACATGTTTCTCTACACAGGTTGGTTGACAGGTCATGTGAC
GAATACTTGGCTAATTGACCAGCTTAGAGACCAGGCGCCTACGATTCTTAGTACTTGAGTATATT
AGGTAAGTTTACTGACTCCTTTGGCTGGCTCCACGTAGTTCGGTTGACTAGAAAATACTATATTT
TGGACGAGCAGCAAGAGGCCATAAAATGTCTCTGTGTTTGACAATTCTGCTTCAGAATGCGTCAG
ATGGCATTGACACAGCTCAGTGCATCATTCATATGCTTTTGCTGG
Right flanking sequence: Indices 31934 -- 32433
AGTTGGTGTGCCTGGACACCTAAAACATAAGTGCCCGCTAGTATCACCTAATGTCCCTCTCCTTA
GGCCGCCACCCCCTGTAGATGCAACTCTGGTCCCAAGGGGTCGCCTAACTACACTACACCTGATG
CACCTTGTCCCAAGGGGTCGCCCTAACTACACCTTACACCCGATGCAACCTGGACCAACTACCAT
GGCTCGATATCTTTGCGTTGACGACTTTAATGCGTATTATTAGTGTGTTCGGATGCAAAGGCATT
GTGACCCAACTCTAATTCGATTGCTCCAAAGAACACCCTGTGGCCACAGCGATACTCGAGCTCGC
TTAGTCGACCGTCGATCATGCACCACCACCAAAAGTGTTTTCTCACCTCGCAAGGTCGCTATAGT
CGCTAAAACCACCCGGGAAAACGCACCCGACACCAGGCGCGGCCCGACACGCCCGTCTCGTCGTC
CGACTCTGCTCGTCCGACGTCTTCACCTTACACGACTCCGTGTCG
Found at i:32077 original size:42 final size:45
Alignment explanation
Indices: 32028--32110 Score: 136
Period size: 42 Copynumber: 1.9 Consensus size: 45
32018 TGCAACTCTG
*
32028 GTCCCAAGGGGTCG-CCTAACTACA-C-TACACCTGATGCACCTT
1 GTCCCAAGGGGTCGCCCTAACTACACCTTACACCCGATGCACCTT
32070 GTCCCAAGGGGTCGCCCTAACTACACCTTACACCCGATGCA
1 GTCCCAAGGGGTCGCCCTAACTACACCTTACACCCGATGCA
32111 ACCTGGACCA
Statistics
Matches: 37, Mismatches: 1, Indels: 3
0.90 0.02 0.07
Matches are distributed among these distances:
42 14 0.38
43 10 0.27
44 1 0.03
45 12 0.32
ACGTcount: A:0.24, C:0.37, G:0.19, T:0.19
Consensus pattern (45 bp):
GTCCCAAGGGGTCGCCCTAACTACACCTTACACCCGATGCACCTT
Left flanking sequence: Indices 31528 -- 32027
ATGTTTCTCTACACAGGTTGGTTGACAGGTCATGTGACGAATACTTGGCTAATTGACCAGCTTAG
AGACCAGGCGCCTACGATTCTTAGTACTTGAGTATATTAGGTAAGTTTACTGACTCCTTTGGCTG
GCTCCACGTAGTTCGGTTGACTAGAAAATACTATATTTTGGACGAGCAGCAAGAGGCCATAAAAT
GTCTCTGTGTTTGACAATTCTGCTTCAGAATGCGTCAGATGGCATTGACACAGCTCAGTGCATCA
TTCATATGCTTTTGCTGGCTGTGCCATTCGTCTGGCTGTGTATTCGTCTGGCTGTGTATTCGTCT
GGCTGTGCTATTCATCTTTTTGTAATATTCGTCTAACAGTGCCATTCGTCTGACTGTGCTATTCG
TCTAATTGTTCTATTCAGTTGGTGTGCCTGGACACCTAAAACATAAGTGCCCGCTAGTATCACCT
AATGTCCCTCTCCTTAGGCCGCCACCCCCTGTAGATGCAACTCTG
Right flanking sequence: Indices 32111 -- 32610
ACCTGGACCAACTACCATGGCTCGATATCTTTGCGTTGACGACTTTAATGCGTATTATTAGTGTG
TTCGGATGCAAAGGCATTGTGACCCAACTCTAATTCGATTGCTCCAAAGAACACCCTGTGGCCAC
AGCGATACTCGAGCTCGCTTAGTCGACCGTCGATCATGCACCACCACCAAAAGTGTTTTCTCACC
TCGCAAGGTCGCTATAGTCGCTAAAACCACCCGGGAAAACGCACCCGACACCAGGCGCGGCCCGA
CACGCCCGTCTCGTCGTCCGACTCTGCTCGTCCGACGTCTTCACCTTACACGACTCCGTGTCGTC
CTCAGCCCCCACGACATGCGGAAATGTGGCACTAAAGTTTAATTATATCCTGTCGCCCTTGCATA
CCAGCCACCGGATTCAAGCGAGTAATTGCTCACCAACACCACCCACCTGCGGGTGTCGTCACCCA
GCGTTGGCACCACCGCACCGCTGGTGGCGTTTGCGGGGGCCCCTG
Found at i:33918 original size:11 final size:11
Alignment explanation
Indices: 33902--33937 Score: 63
Period size: 11 Copynumber: 3.3 Consensus size: 11
33892 CCACGCTAGG
33902 GGTGGGTGCAC
1 GGTGGGTGCAC
33913 GGTGGGTGCAC
1 GGTGGGTGCAC
*
33924 GGTTGGTGCAC
1 GGTGGGTGCAC
33935 GGT
1 GGT
33938 CATGGGGGCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
11 24 1.00
ACGTcount: A:0.08, C:0.17, G:0.53, T:0.22
Consensus pattern (11 bp):
GGTGGGTGCAC
Left flanking sequence: Indices 33402 -- 33901
TCTGTGCATACCCCCAGCTCCACGCATCATGCAAAGGGGTCCCGGTTGAGGCAAGTGAATGCGGA
TTAGACTTTGGGCGAACAATCAGATTTTTTTGAAATAGAAGCAAGGATCATCTTCTTTGTGAAAC
TTCGTGGTTATTTTCTCGGTGCTACAGCCGCTGTGCGTGACTAGTGGGGGGTGATATTGCCGAGC
AACGCCAGGATGCGGCCGCTCAGCTCGGTGGTGGTGGTGGGGGAGCTTCGGGTGGGGTCCGCACA
TAATCACCCAAGGCCCGCCAATTATTATTGCCGGGGAGCGACGCACCTCAGGAATGTGGTCGCTG
CCAGGGCAAGTGGATCCTCCAACATTCCCGGACGCATGCCCAATGGGGAAGCCGAGGGGGAATGC
CGACACCGTTTGCTCGGGCTACCCCACGCCACATCAAGCAACCTCGGGGCACCGCTCGGCCGAGT
GCTGGTTTCGTGCAGTCGCAGCAGCTTTGCAGCGGCCACGCTAGG
Right flanking sequence: Indices 33938 -- 34437
CATGGGGGCAACAGGAACAGCGTGTCTGAGGTGCGCTTCGCAAGGCTACCGAGCCCAGGGCATTA
CGTAAGTGTAATTCGGGAATGTGGGTAGGGTAAGTGGGGTGTAGGGTATGTGTAGGGTTGAATGA
GACGTTTGGGTGGATGTTGGTGAATGTTTGGGACAATGTTTGAAAGAATGTTTGGATGTCTCAGA
GTACTGCGTCGGATGGTCAATGGTTGAAAAGAAGTGAAAAATGTACAGGTCGGTGGAGTAGCGAC
CAGAGAGACTAACCAGCAGACAATGCCCCCCAGAACCAGTCGACTGACCCGCCCCCGGGGTGATC
ACGCTGTGTGCGTATTTATAGAACCTCGTCTAAACCGTGAGACAGGTCACACCGAAGAGCACGTA
AATACGACCGCCTCAATGGTACCCCCATTGCTCGATACGAGTAACACTGGAACGGCGTGAGCGTT
GTGCTCGTCTAATGGGTCCAGCGAAAAGGAGATGAATGGTGCTTA
Found at i:36755 original size:21 final size:20
Alignment explanation
Indices: 36729--36790 Score: 79
Period size: 21 Copynumber: 3.0 Consensus size: 20
36719 GCCAGAGGTG
* *
36729 CAACCACAACAACCAGAGAC
1 CAACCAGAACAGCCAGAGAC
*
36749 ACGACCAGAACAGCCAGAGATC
1 -CAACCAGAACAGCCAGAGA-C
36771 CAACCAGAACAGCCAGAGAC
1 CAACCAGAACAGCCAGAGAC
36791 TGTCAATCCC
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
20 1 0.03
21 34 0.94
22 1 0.03
ACGTcount: A:0.45, C:0.35, G:0.18, T:0.02
Consensus pattern (20 bp):
CAACCAGAACAGCCAGAGAC
Left flanking sequence: Indices 36229 -- 36728
GTTGGCGGAGTGCTCGGGGTCGATGTAGGTGGCCCGTGCGTAGAGATCGTACACGGTCTCGCTGT
AGCCCACGAGACACCCGAGCACGAGGAACACCGCGGTGGCTTTCCACGGGATCCATGGTTTGGGG
CCCCTGTCGGGGAGATGGTCGAATGGCGAGTCGTTCATGCCACGGGTGGCGTAGCCACGCGAGCG
GAGGGTTCGCAGGGGGCCCAGCGGGCGTTTGAGGGGCAGACCGGGCGTCAAGACCCGCCGGAACC
CGGGGAAAAGCCGTGCGGAGTGGAGCATGGGGTGGTGGAGATGATCCCGTTGCGGCTTTGGTACA
GGAACGCGAGCGAAACAGTATGGAGCCCATGGACGTGGACGAGACGCGGGCAATTGGGACCGAGC
CAGAGAGAGAAGCGGAGGCGGGTGCTGGTAATGAAACAATGTTGAGTGAAGCACCGCCAGCGACG
CAGCCTGAGGCTCCGACAGAGGCCTCGATGCCACAGCCAGAGGTG
Right flanking sequence: Indices 36791 -- 37290
TGTCAATCCCACCAACCAACCACCTGTTTCAGCTGTTTTAGAACCCGTTACCGACGCTGCTCCCG
TTACCGACGCTACTGCTCCTGTTACCGACGCTACTGCTCCTGTTTCAGACTACTCCCAGGCTGAA
ACCTCCACCCATTCCGTTTCAGAATCCTCTGTGCCCCCCGCGACTGAAACCTCCCACCCCGTTTC
AGACTCCTCCGCGCCTCCGGCAGCTGAAACCTCCTCCACTCCAGCCGTCTCCACCAAGGACACCA
CGGTGTTGGTGTCTGCGGACTCGGCCCAGCCCGCCGACACCCCCACAGACACCCCCCGCGCCACC
CCAAAGCCCGAGGCCACGCCGCCCGCCGAGTCCAAGCACTCGTACGGCACCCGGCTGAAGGACCG
CTCCAAAGAGGAGGAGGCCCGCCAGCGACTGCTTGCCAAGCAGAAAGCAGCCAACGTGGTGGTCA
AACCTCGGCTCAAACCGGTCGCCTACGCCGCCAGCGACGCCCCCA
Found at i:36873 original size:21 final size:21
Alignment explanation
Indices: 36834--36895 Score: 94
Period size: 21 Copynumber: 3.1 Consensus size: 21
36824 TGTTTTAGAA
36834 CCCGTTACCGACG---CTGCT
1 CCCGTTACCGACGCTACTGCT
36852 CCCGTTACCGACGCTACTGCT
1 CCCGTTACCGACGCTACTGCT
*
36873 CCTGTTACCGACGCTACTGCT
1 CCCGTTACCGACGCTACTGCT
36894 CC
1 CC
36896 TGTTTCAGAC
Statistics
Matches: 40, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
18 13 0.32
21 27 0.68
ACGTcount: A:0.13, C:0.44, G:0.19, T:0.24
Consensus pattern (21 bp):
CCCGTTACCGACGCTACTGCT
Left flanking sequence: Indices 36334 -- 36833
TTTCCACGGGATCCATGGTTTGGGGCCCCTGTCGGGGAGATGGTCGAATGGCGAGTCGTTCATGC
CACGGGTGGCGTAGCCACGCGAGCGGAGGGTTCGCAGGGGGCCCAGCGGGCGTTTGAGGGGCAGA
CCGGGCGTCAAGACCCGCCGGAACCCGGGGAAAAGCCGTGCGGAGTGGAGCATGGGGTGGTGGAG
ATGATCCCGTTGCGGCTTTGGTACAGGAACGCGAGCGAAACAGTATGGAGCCCATGGACGTGGAC
GAGACGCGGGCAATTGGGACCGAGCCAGAGAGAGAAGCGGAGGCGGGTGCTGGTAATGAAACAAT
GTTGAGTGAAGCACCGCCAGCGACGCAGCCTGAGGCTCCGACAGAGGCCTCGATGCCACAGCCAG
AGGTGCAACCACAACAACCAGAGACACGACCAGAACAGCCAGAGATCCAACCAGAACAGCCAGAG
ACTGTCAATCCCACCAACCAACCACCTGTTTCAGCTGTTTTAGAA
Right flanking sequence: Indices 36896 -- 37395
TGTTTCAGACTACTCCCAGGCTGAAACCTCCACCCATTCCGTTTCAGAATCCTCTGTGCCCCCCG
CGACTGAAACCTCCCACCCCGTTTCAGACTCCTCCGCGCCTCCGGCAGCTGAAACCTCCTCCACT
CCAGCCGTCTCCACCAAGGACACCACGGTGTTGGTGTCTGCGGACTCGGCCCAGCCCGCCGACAC
CCCCACAGACACCCCCCGCGCCACCCCAAAGCCCGAGGCCACGCCGCCCGCCGAGTCCAAGCACT
CGTACGGCACCCGGCTGAAGGACCGCTCCAAAGAGGAGGAGGCCCGCCAGCGACTGCTTGCCAAG
CAGAAAGCAGCCAACGTGGTGGTCAAACCTCGGCTCAAACCGGTCGCCTACGCCGCCAGCGACGC
CCCCACAGCCCACGACGGGCGCACCGCCGCGCTGGCCGTCGCCGACACCCAGTTCTACGTGACGG
ACGACTCGGTGCCCTTGAACAAACGCGGGTTCAAGTACAAGCCGT
Found at i:36896 original size:21 final size:21
Alignment explanation
Indices: 36847--36899 Score: 97
Period size: 21 Copynumber: 2.5 Consensus size: 21
36837 GTTACCGACG
*
36847 CTGCTCCCGTTACCGACGCTA
1 CTGCTCCTGTTACCGACGCTA
36868 CTGCTCCTGTTACCGACGCTA
1 CTGCTCCTGTTACCGACGCTA
36889 CTGCTCCTGTT
1 CTGCTCCTGTT
36900 TCAGACTACT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.11, C:0.40, G:0.19, T:0.30
Consensus pattern (21 bp):
CTGCTCCTGTTACCGACGCTA
Left flanking sequence: Indices 36347 -- 36846
CATGGTTTGGGGCCCCTGTCGGGGAGATGGTCGAATGGCGAGTCGTTCATGCCACGGGTGGCGTA
GCCACGCGAGCGGAGGGTTCGCAGGGGGCCCAGCGGGCGTTTGAGGGGCAGACCGGGCGTCAAGA
CCCGCCGGAACCCGGGGAAAAGCCGTGCGGAGTGGAGCATGGGGTGGTGGAGATGATCCCGTTGC
GGCTTTGGTACAGGAACGCGAGCGAAACAGTATGGAGCCCATGGACGTGGACGAGACGCGGGCAA
TTGGGACCGAGCCAGAGAGAGAAGCGGAGGCGGGTGCTGGTAATGAAACAATGTTGAGTGAAGCA
CCGCCAGCGACGCAGCCTGAGGCTCCGACAGAGGCCTCGATGCCACAGCCAGAGGTGCAACCACA
ACAACCAGAGACACGACCAGAACAGCCAGAGATCCAACCAGAACAGCCAGAGACTGTCAATCCCA
CCAACCAACCACCTGTTTCAGCTGTTTTAGAACCCGTTACCGACG
Right flanking sequence: Indices 36900 -- 37399
TCAGACTACTCCCAGGCTGAAACCTCCACCCATTCCGTTTCAGAATCCTCTGTGCCCCCCGCGAC
TGAAACCTCCCACCCCGTTTCAGACTCCTCCGCGCCTCCGGCAGCTGAAACCTCCTCCACTCCAG
CCGTCTCCACCAAGGACACCACGGTGTTGGTGTCTGCGGACTCGGCCCAGCCCGCCGACACCCCC
ACAGACACCCCCCGCGCCACCCCAAAGCCCGAGGCCACGCCGCCCGCCGAGTCCAAGCACTCGTA
CGGCACCCGGCTGAAGGACCGCTCCAAAGAGGAGGAGGCCCGCCAGCGACTGCTTGCCAAGCAGA
AAGCAGCCAACGTGGTGGTCAAACCTCGGCTCAAACCGGTCGCCTACGCCGCCAGCGACGCCCCC
ACAGCCCACGACGGGCGCACCGCCGCGCTGGCCGTCGCCGACACCCAGTTCTACGTGACGGACGA
CTCGGTGCCCTTGAACAAACGCGGGTTCAAGTACAAGCCGTGTGC
Found at i:38520 original size:9 final size:9
Alignment explanation
Indices: 38493--38596 Score: 140
Period size: 9 Copynumber: 11.6 Consensus size: 9
38483 GGATGAAGTG
*
38493 GATGAAGGT
1 GATGACGGT
*
38502 GATGAAGGT
1 GATGACGGT
38511 GATGACGGT
1 GATGACGGT
38520 GATGACGGT
1 GATGACGGT
38529 GATGACGGT
1 GATGACGGT
38538 GATGACGGT
1 GATGACGGT
38547 GATGACGGT
1 GATGACGGT
38556 GATGACGGT
1 GATGACGGT
38565 GATGA-GGAT
1 GATGACGG-T
*
38574 GATGAAGGT
1 GATGACGGT
*
38583 GGAT-AAGGT
1 -GATGACGGT
38592 GATGA
1 GATGA
38597 ATGAAAAAGA
Statistics
Matches: 90, Mismatches: 1, Indels: 8
0.91 0.01 0.08
Matches are distributed among these distances:
8 5 0.06
9 80 0.89
10 5 0.06
ACGTcount: A:0.28, C:0.06, G:0.44, T:0.22
Consensus pattern (9 bp):
GATGACGGT
Left flanking sequence: Indices 37993 -- 38492
AGTACGAGTACACGCCCACCAAGGCGATGGAGCACTTGCTCAACCCGGTGCTGATGGTGGGCGAG
CGCGCGGTGGTGGAGAACGAGACCAACAACCGGTTGCTGGAGAACTTGCCGCGGATTCCCCGGTC
GCGGGTCCGGTTCTTCAAGAACGGGGTGGAGCTGGCGCAGCGGCTCGAGGAGCTCTACCTGTTTT
TGCCCACCGAGGTGAGCACCGCCAACGTCGGGTACAACACTGCCCAGGCGCAGAACCCCGACTAC
CGCCAGACCGACGACGGGTCGCTTGGGTACTACCCGATGGTGTCGTGTTTCCAGGGGGCGGTGGT
GGAGTTGAACGCCGGGCCCGAGTTCCGGTACCCCGTGGGGGACGAGGCGCGGCCGTTGTGCGAGC
GGTTTGACGAGCTGGTGGTGGAGCTGTGGTACTGGGACCTCGTGGACGAGGTGGAGGCCGAGTAC
TTGGATAGTTTTGAGTGAGGGAAGAAGAAGGAGGGGGATGAAGTG
Right flanking sequence: Indices 38597 -- 39096
ATGAAAAAGATTAAGGATGTGTCAGGACAGTATTGAAGAGTGAGGTTGGTTGAAAGAGACTGAGA
AGACTGAGAAGACTGAGAAAGACCGAGAAAGTCTGTGAAAAGACAGAGTGGAAAAGAGTGAATAC
AAAGTCTCGATACCTAATGAAAGAGCCATAACTCTCAATCAATCTGGTTAATGTTTCATCTACTG
TCCTGCTCACCAAACCATTTACTTCCGAATACTGCCTCTAATAATGTATTATAATGCTATACATA
ATGTGATAGGAGTAGACAACCGGGAAGACTGAACGAGGCAAAGACTTAACGAGCTACTAAGCTAA
ACAGCTACACAATCAAACAGCCACATAAGCTAACAGCTACACAAGTCACAAGCTGCAAGCTATAT
TCCACCCTTGTGCTGCTCGTCTCTCACCAGTCTCCGTACTGGCCACCTCTACAATCCTTCAATCC
TCTCAGTCATTCTCCACCACCTCTCAGTCATCCTTTAATCACCCT
Found at i:38667 original size:9 final size:9
Alignment explanation
Indices: 38653--38690 Score: 58
Period size: 9 Copynumber: 4.1 Consensus size: 9
38643 TGGTTGAAAG
38653 AGACTGAGA
1 AGACTGAGA
38662 AGACTGAGA
1 AGACTGAGA
38671 AGACTGAGAA
1 AGACTGAG-A
*
38681 AGACCGAGA
1 AGACTGAGA
38690 A
1 A
38691 AGTCTGTGAA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
9 19 0.70
10 8 0.30
ACGTcount: A:0.47, C:0.13, G:0.32, T:0.08
Consensus pattern (9 bp):
AGACTGAGA
Left flanking sequence: Indices 38153 -- 38652
GCTGGCGCAGCGGCTCGAGGAGCTCTACCTGTTTTTGCCCACCGAGGTGAGCACCGCCAACGTCG
GGTACAACACTGCCCAGGCGCAGAACCCCGACTACCGCCAGACCGACGACGGGTCGCTTGGGTAC
TACCCGATGGTGTCGTGTTTCCAGGGGGCGGTGGTGGAGTTGAACGCCGGGCCCGAGTTCCGGTA
CCCCGTGGGGGACGAGGCGCGGCCGTTGTGCGAGCGGTTTGACGAGCTGGTGGTGGAGCTGTGGT
ACTGGGACCTCGTGGACGAGGTGGAGGCCGAGTACTTGGATAGTTTTGAGTGAGGGAAGAAGAAG
GAGGGGGATGAAGTGGATGAAGGTGATGAAGGTGATGACGGTGATGACGGTGATGACGGTGATGA
CGGTGATGACGGTGATGACGGTGATGAGGATGATGAAGGTGGATAAGGTGATGAATGAAAAAGAT
TAAGGATGTGTCAGGACAGTATTGAAGAGTGAGGTTGGTTGAAAG
Right flanking sequence: Indices 38691 -- 39190
AGTCTGTGAAAAGACAGAGTGGAAAAGAGTGAATACAAAGTCTCGATACCTAATGAAAGAGCCAT
AACTCTCAATCAATCTGGTTAATGTTTCATCTACTGTCCTGCTCACCAAACCATTTACTTCCGAA
TACTGCCTCTAATAATGTATTATAATGCTATACATAATGTGATAGGAGTAGACAACCGGGAAGAC
TGAACGAGGCAAAGACTTAACGAGCTACTAAGCTAAACAGCTACACAATCAAACAGCCACATAAG
CTAACAGCTACACAAGTCACAAGCTGCAAGCTATATTCCACCCTTGTGCTGCTCGTCTCTCACCA
GTCTCCGTACTGGCCACCTCTACAATCCTTCAATCCTCTCAGTCATTCTCCACCACCTCTCAGTC
ATCCTTTAATCACCCTCCCATCATCCTCAAACCACCTCATCCCCCCACACCCGGCTTCACGGGCC
CAAACGGGGTGGCCGCCACCAGCAGCGACCGCAGAAACACCGCAA
Found at i:38676 original size:18 final size:19
Alignment explanation
Indices: 38653--38690 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
38643 TGGTTGAAAG
*
38653 AGACTGAG-AAGACTGAGA
1 AGACTGAGAAAGACCGAGA
38671 AGACTGAGAAAGACCGAGA
1 AGACTGAGAAAGACCGAGA
38690 A
1 A
38691 AGTCTGTGAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 8 0.44
19 10 0.56
ACGTcount: A:0.47, C:0.13, G:0.32, T:0.08
Consensus pattern (19 bp):
AGACTGAGAAAGACCGAGA
Left flanking sequence: Indices 38153 -- 38652
GCTGGCGCAGCGGCTCGAGGAGCTCTACCTGTTTTTGCCCACCGAGGTGAGCACCGCCAACGTCG
GGTACAACACTGCCCAGGCGCAGAACCCCGACTACCGCCAGACCGACGACGGGTCGCTTGGGTAC
TACCCGATGGTGTCGTGTTTCCAGGGGGCGGTGGTGGAGTTGAACGCCGGGCCCGAGTTCCGGTA
CCCCGTGGGGGACGAGGCGCGGCCGTTGTGCGAGCGGTTTGACGAGCTGGTGGTGGAGCTGTGGT
ACTGGGACCTCGTGGACGAGGTGGAGGCCGAGTACTTGGATAGTTTTGAGTGAGGGAAGAAGAAG
GAGGGGGATGAAGTGGATGAAGGTGATGAAGGTGATGACGGTGATGACGGTGATGACGGTGATGA
CGGTGATGACGGTGATGACGGTGATGAGGATGATGAAGGTGGATAAGGTGATGAATGAAAAAGAT
TAAGGATGTGTCAGGACAGTATTGAAGAGTGAGGTTGGTTGAAAG
Right flanking sequence: Indices 38691 -- 39190
AGTCTGTGAAAAGACAGAGTGGAAAAGAGTGAATACAAAGTCTCGATACCTAATGAAAGAGCCAT
AACTCTCAATCAATCTGGTTAATGTTTCATCTACTGTCCTGCTCACCAAACCATTTACTTCCGAA
TACTGCCTCTAATAATGTATTATAATGCTATACATAATGTGATAGGAGTAGACAACCGGGAAGAC
TGAACGAGGCAAAGACTTAACGAGCTACTAAGCTAAACAGCTACACAATCAAACAGCCACATAAG
CTAACAGCTACACAAGTCACAAGCTGCAAGCTATATTCCACCCTTGTGCTGCTCGTCTCTCACCA
GTCTCCGTACTGGCCACCTCTACAATCCTTCAATCCTCTCAGTCATTCTCCACCACCTCTCAGTC
ATCCTTTAATCACCCTCCCATCATCCTCAAACCACCTCATCCCCCCACACCCGGCTTCACGGGCC
CAAACGGGGTGGCCGCCACCAGCAGCGACCGCAGAAACACCGCAA
Found at i:38927 original size:16 final size:17
Alignment explanation
Indices: 38908--38962 Score: 62
Period size: 16 Copynumber: 3.4 Consensus size: 17
38898 AGACTTAACG
38908 AGCTAC-TAAGCTAAAC
1 AGCTACATAAGCTAAAC
* *
38924 AGCTACACAATC-AAAC
1 AGCTACATAAGCTAAAC
*
38940 AGCCACATAAGCT-AAC
1 AGCTACATAAGCTAAAC
38956 AGCTACA
1 AGCTACA
38963 CAAGTCACAA
Statistics
Matches: 31, Mismatches: 6, Indels: 4
0.76 0.15 0.10
Matches are distributed among these distances:
16 28 0.90
17 3 0.10
ACGTcount: A:0.45, C:0.29, G:0.11, T:0.15
Consensus pattern (17 bp):
AGCTACATAAGCTAAAC
Left flanking sequence: Indices 38408 -- 38907
GTGGTACTGGGACCTCGTGGACGAGGTGGAGGCCGAGTACTTGGATAGTTTTGAGTGAGGGAAGA
AGAAGGAGGGGGATGAAGTGGATGAAGGTGATGAAGGTGATGACGGTGATGACGGTGATGACGGT
GATGACGGTGATGACGGTGATGACGGTGATGAGGATGATGAAGGTGGATAAGGTGATGAATGAAA
AAGATTAAGGATGTGTCAGGACAGTATTGAAGAGTGAGGTTGGTTGAAAGAGACTGAGAAGACTG
AGAAGACTGAGAAAGACCGAGAAAGTCTGTGAAAAGACAGAGTGGAAAAGAGTGAATACAAAGTC
TCGATACCTAATGAAAGAGCCATAACTCTCAATCAATCTGGTTAATGTTTCATCTACTGTCCTGC
TCACCAAACCATTTACTTCCGAATACTGCCTCTAATAATGTATTATAATGCTATACATAATGTGA
TAGGAGTAGACAACCGGGAAGACTGAACGAGGCAAAGACTTAACG
Right flanking sequence: Indices 38963 -- 39462
CAAGTCACAAGCTGCAAGCTATATTCCACCCTTGTGCTGCTCGTCTCTCACCAGTCTCCGTACTG
GCCACCTCTACAATCCTTCAATCCTCTCAGTCATTCTCCACCACCTCTCAGTCATCCTTTAATCA
CCCTCCCATCATCCTCAAACCACCTCATCCCCCCACACCCGGCTTCACGGGCCCAAACGGGGTGG
CCGCCACCAGCAGCGACCGCAGAAACACCGCAAAGCACCGGGGATGGAAAAACCGCTCAGGCTCA
CCAGCCACCGCCATCCCCAGCGTCATCACAATGTCGTCGCACCCGCTGCACCTCACCACGTCGCC
CAGCGCCCCGTGGCGGTCGAGCAAGTACAGCGCCAACTCCGCCACCGCCCGCGGCGACAAGTACA
CGTGGTCGCGGTCCTCCTCGAGCCACCCGTCGTCGACAAACCGCGTGAGCTGGTAGTCCAGCTGC
TTGAGGGTGCGGTTGGCGACCTCGCCGAGCTTGCGGTAGGCGTTG
Found at i:39829 original size:12 final size:12
Alignment explanation
Indices: 39811--39859 Score: 64
Period size: 12 Copynumber: 4.1 Consensus size: 12
39801 CGACGGAGGT
39811 GCGTTGGAGGGA
1 GCGTTGGAGGGA
*
39823 ACGTTGGAGGTG-
1 GCGTTGGAGG-GA
39835 GCGTTGGAGGGA
1 GCGTTGGAGGGA
*
39847 GCATTGGAGGGA
1 GCGTTGGAGGGA
39859 G
1 G
39860 TGTCGGACTC
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
11 1 0.03
12 30 0.94
13 1 0.03
ACGTcount: A:0.18, C:0.08, G:0.55, T:0.18
Consensus pattern (12 bp):
GCGTTGGAGGGA
Left flanking sequence: Indices 39311 -- 39810
AGTACAGCGCCAACTCCGCCACCGCCCGCGGCGACAAGTACACGTGGTCGCGGTCCTCCTCGAGC
CACCCGTCGTCGACAAACCGCGTGAGCTGGTAGTCCAGCTGCTTGAGGGTGCGGTTGGCGACCTC
GCCGAGCTTGCGGTAGGCGTTGACCCGGCCCACCGAGTACTGGCGGCCGGGCTGGGCCACGATGT
CGTCGATGAGCTGCTTGAGGAAGTCGAGCTCCGCCACCAGGTACCCCGTGGCGAGCTTCAGCACC
GCGTCGGGCTCGGTGTTGGTGAAGATGTAGCAGAGCTCGCCCGCGGTGTCGTCGTACTTGCGGGC
GATCTTGAACCCGTGGTCGGCGATGCGGGCGTTGATGGTGGCGATGACGGTGTCGGTGTCGAGGG
GAGTGGGAGCCAGAGGTGGTTGTGGAGCAAGAGGTGGTGGTTGTTGTCGTGGTGGTTGTGGAGCC
TGTGGCTGTGGTGTGCTGGTGTGTGTCGACACCTCCGACGGAGGT
Right flanking sequence: Indices 39860 -- 40359
TGTCGGACTCGAGAGGTGTTTCCGGTGGTGGTTCAGAAAGCACTTCGAGAGCGCGCTCGACCAGC
GACACGGGGACGCTCTTGAGGCCGCGGATGTAGGTGAGGATGCCGCGGTGCACCTCGGTGAACAG
CGAGGTGGGGTACTCGGGCTCGGGCGTGGGCAGGGCCGTCGCCTCGTAGTCGGACATGACGCGTC
GCACTGGATCAGGATGTGTGAAGAGTGAAGAGAGAAGAAATGTAGGAGTGGTGAAGAATGAAAGA
GTGGGAAAGAGATGAAATTGGACGGAGTTTGGGTGGAAGAAATGAGAATACGGGAGTGTAGAGGG
TTTTGGGGGTCAATTGAACGTGAGGTGGTAGGGGTTTGGTGTGGTGCACTGGGAGATGAGGAGTA
GCGATACGCCAGGAAGCGACGGATTAACAGTGAAAAGCCAAGACGGTATTAGTATGAAGATTAGT
GTAGAGTAAATTTTGATCAATTGCTTAGGATCCTAGTCAGGGTGA
Found at i:39841 original size:24 final size:23
Alignment explanation
Indices: 39805--39856 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 23
39795 CACCTCCGAC
*
39805 GGAGGTGCGTTGGAGGGAACGTT
1 GGAGGTGCGTTGGAGGGAACATT
*
39828 GGAGGTGGCGTTGGAGGGAGCATT
1 GGAGGT-GCGTTGGAGGGAACATT
39852 GGAGG
1 GGAGG
39857 GAGTGTCGGA
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
23 6 0.23
24 20 0.77
ACGTcount: A:0.17, C:0.08, G:0.56, T:0.19
Consensus pattern (23 bp):
GGAGGTGCGTTGGAGGGAACATT
Left flanking sequence: Indices 39305 -- 39804
CGAGCAAGTACAGCGCCAACTCCGCCACCGCCCGCGGCGACAAGTACACGTGGTCGCGGTCCTCC
TCGAGCCACCCGTCGTCGACAAACCGCGTGAGCTGGTAGTCCAGCTGCTTGAGGGTGCGGTTGGC
GACCTCGCCGAGCTTGCGGTAGGCGTTGACCCGGCCCACCGAGTACTGGCGGCCGGGCTGGGCCA
CGATGTCGTCGATGAGCTGCTTGAGGAAGTCGAGCTCCGCCACCAGGTACCCCGTGGCGAGCTTC
AGCACCGCGTCGGGCTCGGTGTTGGTGAAGATGTAGCAGAGCTCGCCCGCGGTGTCGTCGTACTT
GCGGGCGATCTTGAACCCGTGGTCGGCGATGCGGGCGTTGATGGTGGCGATGACGGTGTCGGTGT
CGAGGGGAGTGGGAGCCAGAGGTGGTTGTGGAGCAAGAGGTGGTGGTTGTTGTCGTGGTGGTTGT
GGAGCCTGTGGCTGTGGTGTGCTGGTGTGTGTCGACACCTCCGAC
Right flanking sequence: Indices 39857 -- 40356
GAGTGTCGGACTCGAGAGGTGTTTCCGGTGGTGGTTCAGAAAGCACTTCGAGAGCGCGCTCGACC
AGCGACACGGGGACGCTCTTGAGGCCGCGGATGTAGGTGAGGATGCCGCGGTGCACCTCGGTGAA
CAGCGAGGTGGGGTACTCGGGCTCGGGCGTGGGCAGGGCCGTCGCCTCGTAGTCGGACATGACGC
GTCGCACTGGATCAGGATGTGTGAAGAGTGAAGAGAGAAGAAATGTAGGAGTGGTGAAGAATGAA
AGAGTGGGAAAGAGATGAAATTGGACGGAGTTTGGGTGGAAGAAATGAGAATACGGGAGTGTAGA
GGGTTTTGGGGGTCAATTGAACGTGAGGTGGTAGGGGTTTGGTGTGGTGCACTGGGAGATGAGGA
GTAGCGATACGCCAGGAAGCGACGGATTAACAGTGAAAAGCCAAGACGGTATTAGTATGAAGATT
AGTGTAGAGTAAATTTTGATCAATTGCTTAGGATCCTAGTCAGGG
Found at i:45402 original size:46 final size:44
Alignment explanation
Indices: 45350--45446 Score: 122
Period size: 46 Copynumber: 2.2 Consensus size: 44
45340 GCGTAGAGTA
* * * * *
45350 TGGAGAAATGAGAAGTATGGAGTAGTGAATAGAGAAATGGAAGGTG
1 TGGAGAAATGAGAAATAAGGAGTAGAGAATAG-G-AATAGAAGGAG
*
45396 TGGAGAAATGAGAAATAAGGAGTGGAGAATAGGAATAGAAGGAG
1 TGGAGAAATGAGAAATAAGGAGTAGAGAATAGGAATAGAAGGAG
45440 TGGAGAA
1 TGGAGAA
45447 TGGAAGAATA
Statistics
Matches: 45, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
44 16 0.36
45 1 0.02
46 28 0.62
ACGTcount: A:0.44, C:0.00, G:0.39, T:0.16
Consensus pattern (44 bp):
TGGAGAAATGAGAAATAAGGAGTAGAGAATAGGAATAGAAGGAG
Left flanking sequence: Indices 44850 -- 45349
GGTGTACACGACGCAGTTGGTGGCGGACATCATCAAGGAGAGCGCCAAGGGCCGGTTTGACACGC
GGACGGCGATCCCGGGCCACGTCCAGCAGGGGTATGTGCCGCTGCCGTTGGACCGGGTGATGGCG
GTGCGGCTTTCGATCAAGGGGCTCCAGTTTATCGAGCGGCTGGCGGCGGCGTTCAGCGTGTCGTC
GGCCGAGGAGAGCACCGGCAACGCGGTGGTGATGGGGATCTTGCAGGGCCAGGACACGTTGACGC
CGGTGGACGAGTTGTACGACACCGAGGCGGACGTGGCGCTTCGCAAGGGCAAGACCGTGCACTGG
CGGGTGCTCACCGAGGTGTCGGACATCTTGCTGGGGCGGCTCTTGTTGCGGCAGCGCAAGGAGGC
GCAACTTGTGGGGTGAGAAGCTCAGGGGTAGGAGAAGATTAGATATGTGAATGGTAATGAAGGAA
AGGAATGGAGTGAAGAAAAGGAGTAGAGAAAGAAGGCGTAGAGTA
Right flanking sequence: Indices 45447 -- 45946
TGGAAGAATAGAAAAAGTGGAGAAATAGAAATGGAAGAAGTGGGGAATGGAAGAATAGATGAAAT
GGAGAAATGGGAAATATGGAGTGGAGAATGGAGAAAATGCAAGGGTGGTAGGGAGTGGTGGAGGT
GCTGCGAACTGGTAGAGGTGGTACCGACTCAAATAAAGCTTTGGAAGCATGGTCCCAATTCATCT
CCAGCAATGCTCTACTGGAGCGAATTCTTGTGATTTATGGCATTCGAATGCTATGGGGTATGTCG
ATTCAGATAATGATGTATGGACACTCGTGGATAACCTGTGACATTGGAAGTCGAGGTGGTTGGTA
CAGTTATAAGAAAATGAGCGCATTGGTGGAGGGAACCGTGGGGACTGGTGGTACTGTGGGGACTG
GTGGAACTGCGGGGACTGGTGGATGGTACTGGGACTGGTGGATGGTACTGTGGACTAGAGTAAAA
TTCCTCCTCTCTTTTTGTTTAAACGCAAAGTAGAGATGGTAATAC
Found at i:45420 original size:22 final size:22
Alignment explanation
Indices: 45350--45446 Score: 74
Period size: 22 Copynumber: 4.3 Consensus size: 22
45340 GCGTAGAGTA
* *
45350 TGGAGAAATGAGAAGTATGGAG
1 TGGAGAAATGAGAAATAAGGAG
* * *
45372 TAGTG-AATAGAGAAATGGAAGGTG
1 TGGAGAAAT-GAGAAAT--AAGGAG
45396 TGGAGAAATGAGAAATAAGGAG
1 TGGAGAAATGAGAAATAAGGAG
*
45418 TGGAG-AAT-AGGAATAGAAGGAG
1 TGGAGAAATGA-GAA-ATAAGGAG
45440 TGGAGAA
1 TGGAGAA
45447 TGGAAGAATA
Statistics
Matches: 59, Mismatches: 9, Indels: 13
0.73 0.11 0.16
Matches are distributed among these distances:
20 1 0.02
21 9 0.15
22 31 0.53
23 1 0.02
24 14 0.24
25 3 0.05
ACGTcount: A:0.44, C:0.00, G:0.39, T:0.16
Consensus pattern (22 bp):
TGGAGAAATGAGAAATAAGGAG
Left flanking sequence: Indices 44850 -- 45349
GGTGTACACGACGCAGTTGGTGGCGGACATCATCAAGGAGAGCGCCAAGGGCCGGTTTGACACGC
GGACGGCGATCCCGGGCCACGTCCAGCAGGGGTATGTGCCGCTGCCGTTGGACCGGGTGATGGCG
GTGCGGCTTTCGATCAAGGGGCTCCAGTTTATCGAGCGGCTGGCGGCGGCGTTCAGCGTGTCGTC
GGCCGAGGAGAGCACCGGCAACGCGGTGGTGATGGGGATCTTGCAGGGCCAGGACACGTTGACGC
CGGTGGACGAGTTGTACGACACCGAGGCGGACGTGGCGCTTCGCAAGGGCAAGACCGTGCACTGG
CGGGTGCTCACCGAGGTGTCGGACATCTTGCTGGGGCGGCTCTTGTTGCGGCAGCGCAAGGAGGC
GCAACTTGTGGGGTGAGAAGCTCAGGGGTAGGAGAAGATTAGATATGTGAATGGTAATGAAGGAA
AGGAATGGAGTGAAGAAAAGGAGTAGAGAAAGAAGGCGTAGAGTA
Right flanking sequence: Indices 45447 -- 45946
TGGAAGAATAGAAAAAGTGGAGAAATAGAAATGGAAGAAGTGGGGAATGGAAGAATAGATGAAAT
GGAGAAATGGGAAATATGGAGTGGAGAATGGAGAAAATGCAAGGGTGGTAGGGAGTGGTGGAGGT
GCTGCGAACTGGTAGAGGTGGTACCGACTCAAATAAAGCTTTGGAAGCATGGTCCCAATTCATCT
CCAGCAATGCTCTACTGGAGCGAATTCTTGTGATTTATGGCATTCGAATGCTATGGGGTATGTCG
ATTCAGATAATGATGTATGGACACTCGTGGATAACCTGTGACATTGGAAGTCGAGGTGGTTGGTA
CAGTTATAAGAAAATGAGCGCATTGGTGGAGGGAACCGTGGGGACTGGTGGTACTGTGGGGACTG
GTGGAACTGCGGGGACTGGTGGATGGTACTGGGACTGGTGGATGGTACTGTGGACTAGAGTAAAA
TTCCTCCTCTCTTTTTGTTTAAACGCAAAGTAGAGATGGTAATAC
Found at i:45465 original size:24 final size:24
Alignment explanation
Indices: 45416--45517 Score: 95
Period size: 24 Copynumber: 4.4 Consensus size: 24
45406 AGAAATAAGG
* *
45416 AGTGGAGAAT--AGGAATAGAAGG
1 AGTGGAGAATGGAAGAATAGAAGA
*
45438 AGTGGAGAATGGAAGAATAGAAAA
1 AGTGGAGAATGGAAGAATAGAAGA
* *
45462 AGTGGAGAAATAG-A-AATGGAAGA
1 AGTGGAG-AATGGAAGAATAGAAGA
* *
45485 AGTGGGGAATGGAAGAATAGATGA
1 AGTGGAGAATGGAAGAATAGAAGA
*
45509 AATGGAGAA
1 AGTGGAGAA
45518 ATGGGAAATA
Statistics
Matches: 63, Mismatches: 12, Indels: 8
0.76 0.14 0.10
Matches are distributed among these distances:
22 14 0.22
23 14 0.22
24 31 0.49
25 4 0.06
ACGTcount: A:0.49, C:0.00, G:0.37, T:0.14
Consensus pattern (24 bp):
AGTGGAGAATGGAAGAATAGAAGA
Left flanking sequence: Indices 44916 -- 45415
GACGGCGATCCCGGGCCACGTCCAGCAGGGGTATGTGCCGCTGCCGTTGGACCGGGTGATGGCGG
TGCGGCTTTCGATCAAGGGGCTCCAGTTTATCGAGCGGCTGGCGGCGGCGTTCAGCGTGTCGTCG
GCCGAGGAGAGCACCGGCAACGCGGTGGTGATGGGGATCTTGCAGGGCCAGGACACGTTGACGCC
GGTGGACGAGTTGTACGACACCGAGGCGGACGTGGCGCTTCGCAAGGGCAAGACCGTGCACTGGC
GGGTGCTCACCGAGGTGTCGGACATCTTGCTGGGGCGGCTCTTGTTGCGGCAGCGCAAGGAGGCG
CAACTTGTGGGGTGAGAAGCTCAGGGGTAGGAGAAGATTAGATATGTGAATGGTAATGAAGGAAA
GGAATGGAGTGAAGAAAAGGAGTAGAGAAAGAAGGCGTAGAGTATGGAGAAATGAGAAGTATGGA
GTAGTGAATAGAGAAATGGAAGGTGTGGAGAAATGAGAAATAAGG
Right flanking sequence: Indices 45518 -- 46017
ATGGGAAATATGGAGTGGAGAATGGAGAAAATGCAAGGGTGGTAGGGAGTGGTGGAGGTGCTGCG
AACTGGTAGAGGTGGTACCGACTCAAATAAAGCTTTGGAAGCATGGTCCCAATTCATCTCCAGCA
ATGCTCTACTGGAGCGAATTCTTGTGATTTATGGCATTCGAATGCTATGGGGTATGTCGATTCAG
ATAATGATGTATGGACACTCGTGGATAACCTGTGACATTGGAAGTCGAGGTGGTTGGTACAGTTA
TAAGAAAATGAGCGCATTGGTGGAGGGAACCGTGGGGACTGGTGGTACTGTGGGGACTGGTGGAA
CTGCGGGGACTGGTGGATGGTACTGGGACTGGTGGATGGTACTGTGGACTAGAGTAAAATTCCTC
CTCTCTTTTTGTTTAAACGCAAAGTAGAGATGGTAATACACTATTATAAAAGTGTTATGCTCCGA
ATGAAAATATATACATCACCATTAAGAATAAAACAGAAAATTTAC
Found at i:45489 original size:47 final size:48
Alignment explanation
Indices: 45416--45543 Score: 142
Period size: 47 Copynumber: 2.8 Consensus size: 48
45406 AGAAATAAGG
* *
45416 AGTGGAG-AATAGGAATAGAAGGAGTGGAGAATGGAAGAATAGA-AAA
1 AGTGGAGAAATAGAAATAGAAGAAGTGGAGAATGGAAGAATAGATAAA
* * *
45462 AGTGGAGAAATAGAAATGGAAGAAGTGGGGAATGGAAGAATAGATGAA
1 AGTGGAGAAATAGAAATAGAAGAAGTGGAGAATGGAAGAATAGATAAA
*
45510 A-TGGAGAAATGGGAAATATG--G-AGTGGAGAATGGA
1 AGTGGAGAAAT-AGAAATA-GAAGAAGTGGAGAATGGA
45544 GAAAATGCAA
Statistics
Matches: 70, Mismatches: 8, Indels: 8
0.81 0.09 0.09
Matches are distributed among these distances:
46 19 0.27
47 42 0.60
48 8 0.11
49 1 0.01
ACGTcount: A:0.47, C:0.00, G:0.38, T:0.15
Consensus pattern (48 bp):
AGTGGAGAAATAGAAATAGAAGAAGTGGAGAATGGAAGAATAGATAAA
Left flanking sequence: Indices 44916 -- 45415
GACGGCGATCCCGGGCCACGTCCAGCAGGGGTATGTGCCGCTGCCGTTGGACCGGGTGATGGCGG
TGCGGCTTTCGATCAAGGGGCTCCAGTTTATCGAGCGGCTGGCGGCGGCGTTCAGCGTGTCGTCG
GCCGAGGAGAGCACCGGCAACGCGGTGGTGATGGGGATCTTGCAGGGCCAGGACACGTTGACGCC
GGTGGACGAGTTGTACGACACCGAGGCGGACGTGGCGCTTCGCAAGGGCAAGACCGTGCACTGGC
GGGTGCTCACCGAGGTGTCGGACATCTTGCTGGGGCGGCTCTTGTTGCGGCAGCGCAAGGAGGCG
CAACTTGTGGGGTGAGAAGCTCAGGGGTAGGAGAAGATTAGATATGTGAATGGTAATGAAGGAAA
GGAATGGAGTGAAGAAAAGGAGTAGAGAAAGAAGGCGTAGAGTATGGAGAAATGAGAAGTATGGA
GTAGTGAATAGAGAAATGGAAGGTGTGGAGAAATGAGAAATAAGG
Right flanking sequence: Indices 45544 -- 46043
GAAAATGCAAGGGTGGTAGGGAGTGGTGGAGGTGCTGCGAACTGGTAGAGGTGGTACCGACTCAA
ATAAAGCTTTGGAAGCATGGTCCCAATTCATCTCCAGCAATGCTCTACTGGAGCGAATTCTTGTG
ATTTATGGCATTCGAATGCTATGGGGTATGTCGATTCAGATAATGATGTATGGACACTCGTGGAT
AACCTGTGACATTGGAAGTCGAGGTGGTTGGTACAGTTATAAGAAAATGAGCGCATTGGTGGAGG
GAACCGTGGGGACTGGTGGTACTGTGGGGACTGGTGGAACTGCGGGGACTGGTGGATGGTACTGG
GACTGGTGGATGGTACTGTGGACTAGAGTAAAATTCCTCCTCTCTTTTTGTTTAAACGCAAAGTA
GAGATGGTAATACACTATTATAAAAGTGTTATGCTCCGAATGAAAATATATACATCACCATTAAG
AATAAAACAGAAAATTTACCTAATTTAATAGTGGGTGATAAAATG
Found at i:45832 original size:18 final size:18
Alignment explanation
Indices: 45803--45859 Score: 87
Period size: 18 Copynumber: 3.2 Consensus size: 18
45793 ATTGGTGGAG
*
45803 GGAACCGTGGGGACTGGT
1 GGAACTGTGGGGACTGGT
*
45821 GGTACTGTGGGGACTGGT
1 GGAACTGTGGGGACTGGT
*
45839 GGAACTGCGGGGACTGGT
1 GGAACTGTGGGGACTGGT
45857 GGA
1 GGA
45860 TGGTACTGGG
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 35 1.00
ACGTcount: A:0.16, C:0.14, G:0.51, T:0.19
Consensus pattern (18 bp):
GGAACTGTGGGGACTGGT
Left flanking sequence: Indices 45303 -- 45802
AAAGGAATGGAGTGAAGAAAAGGAGTAGAGAAAGAAGGCGTAGAGTATGGAGAAATGAGAAGTAT
GGAGTAGTGAATAGAGAAATGGAAGGTGTGGAGAAATGAGAAATAAGGAGTGGAGAATAGGAATA
GAAGGAGTGGAGAATGGAAGAATAGAAAAAGTGGAGAAATAGAAATGGAAGAAGTGGGGAATGGA
AGAATAGATGAAATGGAGAAATGGGAAATATGGAGTGGAGAATGGAGAAAATGCAAGGGTGGTAG
GGAGTGGTGGAGGTGCTGCGAACTGGTAGAGGTGGTACCGACTCAAATAAAGCTTTGGAAGCATG
GTCCCAATTCATCTCCAGCAATGCTCTACTGGAGCGAATTCTTGTGATTTATGGCATTCGAATGC
TATGGGGTATGTCGATTCAGATAATGATGTATGGACACTCGTGGATAACCTGTGACATTGGAAGT
CGAGGTGGTTGGTACAGTTATAAGAAAATGAGCGCATTGGTGGAG
Right flanking sequence: Indices 45860 -- 46359
TGGTACTGGGACTGGTGGATGGTACTGTGGACTAGAGTAAAATTCCTCCTCTCTTTTTGTTTAAA
CGCAAAGTAGAGATGGTAATACACTATTATAAAAGTGTTATGCTCCGAATGAAAATATATACATC
ACCATTAAGAATAAAACAGAAAATTTACCTAATTTAATAGTGGGTGATAAAATGGCTGGCAGTTC
CCATGGACAAAAGGGTAGTATCATTAATACCAGAATATGCCAAAGAACTTTCAAACATGGATCTT
CATATTGTGAGATCTCTCTATGATTTCACCATTTATTGCTCCTGCTAAGAATTAGAATTTTGTTG
GAAAATGGGTATGTTTTGATTGTGTGCTAAATTGTGGTTACCAGTTTGACTGGTATATTACGGGT
CTGGTAGAAGGTGGGGTGGAAATAGTGTGGGGCTGCAGTCACTGCATGGGTAGTTTGGGGTTGTA
GTTATTAGGATATCGGTTATTTGGCGGGCTGGTGGTTATTGTGGA
Found at i:45872 original size:19 final size:19
Alignment explanation
Indices: 45848--45892 Score: 81
Period size: 19 Copynumber: 2.3 Consensus size: 19
45838 TGGAACTGCG
45848 GGGACTGGTGGATGGTACT
1 GGGACTGGTGGATGGTACT
45867 GGGACTGGTGGATGGTACT
1 GGGACTGGTGGATGGTACT
45886 GTGGACT
1 G-GGACT
45893 AGAGTAAAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
19 20 0.80
20 5 0.20
ACGTcount: A:0.16, C:0.11, G:0.47, T:0.27
Consensus pattern (19 bp):
GGGACTGGTGGATGGTACT
Left flanking sequence: Indices 45348 -- 45847
TATGGAGAAATGAGAAGTATGGAGTAGTGAATAGAGAAATGGAAGGTGTGGAGAAATGAGAAATA
AGGAGTGGAGAATAGGAATAGAAGGAGTGGAGAATGGAAGAATAGAAAAAGTGGAGAAATAGAAA
TGGAAGAAGTGGGGAATGGAAGAATAGATGAAATGGAGAAATGGGAAATATGGAGTGGAGAATGG
AGAAAATGCAAGGGTGGTAGGGAGTGGTGGAGGTGCTGCGAACTGGTAGAGGTGGTACCGACTCA
AATAAAGCTTTGGAAGCATGGTCCCAATTCATCTCCAGCAATGCTCTACTGGAGCGAATTCTTGT
GATTTATGGCATTCGAATGCTATGGGGTATGTCGATTCAGATAATGATGTATGGACACTCGTGGA
TAACCTGTGACATTGGAAGTCGAGGTGGTTGGTACAGTTATAAGAAAATGAGCGCATTGGTGGAG
GGAACCGTGGGGACTGGTGGTACTGTGGGGACTGGTGGAACTGCG
Right flanking sequence: Indices 45893 -- 46392
AGAGTAAAATTCCTCCTCTCTTTTTGTTTAAACGCAAAGTAGAGATGGTAATACACTATTATAAA
AGTGTTATGCTCCGAATGAAAATATATACATCACCATTAAGAATAAAACAGAAAATTTACCTAAT
TTAATAGTGGGTGATAAAATGGCTGGCAGTTCCCATGGACAAAAGGGTAGTATCATTAATACCAG
AATATGCCAAAGAACTTTCAAACATGGATCTTCATATTGTGAGATCTCTCTATGATTTCACCATT
TATTGCTCCTGCTAAGAATTAGAATTTTGTTGGAAAATGGGTATGTTTTGATTGTGTGCTAAATT
GTGGTTACCAGTTTGACTGGTATATTACGGGTCTGGTAGAAGGTGGGGTGGAAATAGTGTGGGGC
TGCAGTCACTGCATGGGTAGTTTGGGGTTGTAGTTATTAGGATATCGGTTATTTGGCGGGCTGGT
GGTTATTGTGGAATTAGTGGTATTGTTCTGGTGTTGGACCAGTGT
Found at i:46962 original size:11 final size:11
Alignment explanation
Indices: 46934--46973 Score: 71
Period size: 11 Copynumber: 3.5 Consensus size: 11
46924 AGATAATAGC
46934 CAGAAGCGGGT
1 CAGAAGCGGGT
46945 CCAGAAGCGGGT
1 -CAGAAGCGGGT
46957 CAGAAGCGGGT
1 CAGAAGCGGGT
46968 CAGAAG
1 CAGAAG
46974 TGGGGTAACC
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
11 17 0.61
12 11 0.39
ACGTcount: A:0.30, C:0.20, G:0.42, T:0.07
Consensus pattern (11 bp):
CAGAAGCGGGT
Left flanking sequence: Indices 46434 -- 46933
GAAACCCTCCATTCTAGGAACTCCACGGAGCTGAAAACCGGATTACAAGGTAGTGAAGTTGACCA
AAGTTTTTCGTTAAAATTCGAAGTGGTGATCAGTGGTGACTAAGGTACCGTCAGGGTGGTAATTA
CGATAATTTTCTCACAACCATTTTGGCAGCCAACTACCTAATCTTCGCCTGAATAGTAGTTTGTA
ATCACCAAGTACTACCATACGCCACATAAATTGCACTGTCTGGAGACCAAAATAATCGCTTAGTT
TCGCAACCGTTCCAAGAATTTTCGAGGCTTTGGCAAGTGTACCTTTTTAGAAAACATCAGTGCCA
AGTAGGGTCGGTGCATACGGCTCCAATTACACCAGTCATTGTTGCCTTTGTGGTGATTACATATT
GATAATCAGTGGTTCATTGATGATCAGTGGTCTCACCTCTTCGTCCTGGTTGTCTTGGCCTGATC
CTTCCGAGATAATGCACAATCCTAGCCCCATCTCCAGATAATAGC
Right flanking sequence: Indices 46974 -- 47473
TGGGGTAACCACCTGACCGACGCTAGCGGCGAGAAGTGGGGTAATCACTGCCTACCGCACGCACA
GTGCCCACCGGTGCGCTGCACCCCAGAGCACTACGCACATGTAGCCACGCCGTGCACACTTGCAG
GGTTTAGTCGTGCCACCACCTGTGGTCCACTCATGTACGTCGCCAGATTCCCGCGGGTGATCCAT
CACTCCTAGATCGATTTACGACGGCGGCGGTTGGTCGTAACCCTACCGCTTTGGGACACCGCGAA
GCACCACAAAGCACTCGCACAATAGGGCCCATGCACGTCCTTCGCGAGAAGAAGGCGGCAGGCGG
CGCGAGCGACGATGGAGGCGCAGTGGCCCAGTGTCGTCGAAGTGTCGGCCATCTGTCCGACACCG
TTGCCTCCACCGTCGCAGACCTGTGCGAGATGGCGCCACCGAAGCCTACCAACACGGTGCCGAGC
AATTTCTGTGCAGATACGAGGGTACCCGCTCAAACGCCGAGCGGG
Found at i:47864 original size:6 final size:5
Alignment explanation
Indices: 47850--47903 Score: 63
Period size: 5 Copynumber: 10.0 Consensus size: 5
47840 AGTGCGGTCA
47850 CGGTG CGGTG CCGGTG CGGTCG CGGTG CGGTG ACGGTG CGGTG ACGGTG
1 CGGTG CGGTG -CGGTG CGGT-G CGGTG CGGTG -CGGTG CGGTG -CGGTG
*
47899 AGGTG
1 CGGTG
47904 GTTTCTTCGC
Statistics
Matches: 44, Mismatches: 1, Indels: 8
0.83 0.02 0.15
Matches are distributed among these distances:
5 24 0.55
6 20 0.45
ACGTcount: A:0.06, C:0.20, G:0.56, T:0.19
Consensus pattern (5 bp):
CGGTG
Left flanking sequence: Indices 47350 -- 47849
TCTGTCCGACACCGTTGCCTCCACCGTCGCAGACCTGTGCGAGATGGCGCCACCGAAGCCTACCA
ACACGGTGCCGAGCAATTTCTGTGCAGATACGAGGGTACCCGCTCAAACGCCGAGCGGGGATCGG
CGACCGAAACAATTGGGCAGAATCATCCCATCCGTGTCCGGGTTCGCCAGGTCTAAACCTTGTTT
CGAATGGTGTTGGTCGGCTGTTTCTGCAGTACGATTAGTCTGTGTGCATGGGGCGTGGGTGGGGG
TGTGGTAGGGTGCGATCGCACCAGTGCGTGGGTAGAGGTAGGGTACGGTTGAAGGGTAGAGGCGG
GTGGCTAGTCAGGGGAGCGTTAGAGTGCGGGGGAGGCGTTCAGGCGGAAGGCCAAGGTGCGTGGA
TCGAGGCGACGGATTAGCGGTGTTGTAATAATTGGGACAGAGAATATCGTGCGTGTGCAGAGGGT
TTTGTGGTGTCCTGTGAAGTCTGGTGGTGGGGGATAGTGCGGTCA
Right flanking sequence: Indices 47904 -- 48403
GTTTCTTCGCTGAGTCTGTCTACAGAAAATGTCTAGCTTCGTAAGTTTCTTTGGCCAGCGTGATG
TCTTCGGTTTCTTCTTTGGTGTCTTATCGGTCTTCGGTGAGGTATTTTCTTCTGTGGGTAATATT
CTAAAGTCAGTTGTGCCTTTTGTGGACATGAGTAATGTCCACGCAATGATTAGTTGCGAGCCGCC
TGGGGTTAGGTGAAGGTTTGAAAGCAATGATGTCTGGTACGTTCTCAGTGTCGCATGTGTAATTT
TTCAAAGAGCTCTGTGCCCTGCCCGTGGCCTTAAGCCCTGTCAGTGAGTCCTATACGCTTTGTGC
TCTTGTGCCCTGCCCGTATGTCCTTTAAACTTTATGCTCTTACTCTTAGGCCTTTATGCTCTTGC
TCTTAGGCCTTTCTGTATGTTCTGTCTGCCTTTTGTCCGTCCTTCGTTTAGTGTTCTCTGTGTCT
GATCGATGTGTCTGTGGGTGTTCTGATGTGTCTGTTGGTGCCCGT
Found at i:47903 original size:11 final size:11
Alignment explanation
Indices: 47841--47903 Score: 83
Period size: 11 Copynumber: 5.7 Consensus size: 11
47831 GTGGGGGATA
*
47841 GTGCGGTCACG
1 GTGCGGTGACG
*
47852 GTGCGGTGCCG
1 GTGCGGTGACG
47863 GTGCGGTCG-CG
1 GTGCGGT-GACG
47874 GTGCGGTGACG
1 GTGCGGTGACG
47885 GTGCGGTGACG
1 GTGCGGTGACG
*
47896 GTGAGGTG
1 GTGCGGTG
47904 GTTTCTTCGC
Statistics
Matches: 47, Mismatches: 3, Indels: 4
0.87 0.06 0.07
Matches are distributed among these distances:
10 1 0.02
11 45 0.96
12 1 0.02
ACGTcount: A:0.06, C:0.21, G:0.54, T:0.19
Consensus pattern (11 bp):
GTGCGGTGACG
Left flanking sequence: Indices 47341 -- 47840
TGTCGGCCATCTGTCCGACACCGTTGCCTCCACCGTCGCAGACCTGTGCGAGATGGCGCCACCGA
AGCCTACCAACACGGTGCCGAGCAATTTCTGTGCAGATACGAGGGTACCCGCTCAAACGCCGAGC
GGGGATCGGCGACCGAAACAATTGGGCAGAATCATCCCATCCGTGTCCGGGTTCGCCAGGTCTAA
ACCTTGTTTCGAATGGTGTTGGTCGGCTGTTTCTGCAGTACGATTAGTCTGTGTGCATGGGGCGT
GGGTGGGGGTGTGGTAGGGTGCGATCGCACCAGTGCGTGGGTAGAGGTAGGGTACGGTTGAAGGG
TAGAGGCGGGTGGCTAGTCAGGGGAGCGTTAGAGTGCGGGGGAGGCGTTCAGGCGGAAGGCCAAG
GTGCGTGGATCGAGGCGACGGATTAGCGGTGTTGTAATAATTGGGACAGAGAATATCGTGCGTGT
GCAGAGGGTTTTGTGGTGTCCTGTGAAGTCTGGTGGTGGGGGATA
Right flanking sequence: Indices 47904 -- 48403
GTTTCTTCGCTGAGTCTGTCTACAGAAAATGTCTAGCTTCGTAAGTTTCTTTGGCCAGCGTGATG
TCTTCGGTTTCTTCTTTGGTGTCTTATCGGTCTTCGGTGAGGTATTTTCTTCTGTGGGTAATATT
CTAAAGTCAGTTGTGCCTTTTGTGGACATGAGTAATGTCCACGCAATGATTAGTTGCGAGCCGCC
TGGGGTTAGGTGAAGGTTTGAAAGCAATGATGTCTGGTACGTTCTCAGTGTCGCATGTGTAATTT
TTCAAAGAGCTCTGTGCCCTGCCCGTGGCCTTAAGCCCTGTCAGTGAGTCCTATACGCTTTGTGC
TCTTGTGCCCTGCCCGTATGTCCTTTAAACTTTATGCTCTTACTCTTAGGCCTTTATGCTCTTGC
TCTTAGGCCTTTCTGTATGTTCTGTCTGCCTTTTGTCCGTCCTTCGTTTAGTGTTCTCTGTGTCT
GATCGATGTGTCTGTGGGTGTTCTGATGTGTCTGTTGGTGCCCGT
Found at i:48286 original size:22 final size:22
Alignment explanation
Indices: 48258--48305 Score: 87
Period size: 22 Copynumber: 2.2 Consensus size: 22
48248 GTCCTTTAAA
48258 CTTTATGCTCTTACTCTTAGGC
1 CTTTATGCTCTTACTCTTAGGC
*
48280 CTTTATGCTCTTGCTCTTAGGC
1 CTTTATGCTCTTACTCTTAGGC
48302 CTTT
1 CTTT
48306 CTGTATGTTC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.10, C:0.27, G:0.15, T:0.48
Consensus pattern (22 bp):
CTTTATGCTCTTACTCTTAGGC
Left flanking sequence: Indices 47758 -- 48257
GGTGTTGTAATAATTGGGACAGAGAATATCGTGCGTGTGCAGAGGGTTTTGTGGTGTCCTGTGAA
GTCTGGTGGTGGGGGATAGTGCGGTCACGGTGCGGTGCCGGTGCGGTCGCGGTGCGGTGACGGTG
CGGTGACGGTGAGGTGGTTTCTTCGCTGAGTCTGTCTACAGAAAATGTCTAGCTTCGTAAGTTTC
TTTGGCCAGCGTGATGTCTTCGGTTTCTTCTTTGGTGTCTTATCGGTCTTCGGTGAGGTATTTTC
TTCTGTGGGTAATATTCTAAAGTCAGTTGTGCCTTTTGTGGACATGAGTAATGTCCACGCAATGA
TTAGTTGCGAGCCGCCTGGGGTTAGGTGAAGGTTTGAAAGCAATGATGTCTGGTACGTTCTCAGT
GTCGCATGTGTAATTTTTCAAAGAGCTCTGTGCCCTGCCCGTGGCCTTAAGCCCTGTCAGTGAGT
CCTATACGCTTTGTGCTCTTGTGCCCTGCCCGTATGTCCTTTAAA
Right flanking sequence: Indices 48306 -- 48805
CTGTATGTTCTGTCTGCCTTTTGTCCGTCCTTCGTTTAGTGTTCTCTGTGTCTGATCGATGTGTC
TGTGGGTGTTCTGATGTGTCTGTTGGTGCCCGTCGTGCCTGTTGTGCCCGACGTGCTGGTGCCCG
ACGTGCCTGTTGTGCCCGACGTGCCTGTTGGTGCTCAGACGTGCTTACGATGTCTCTCGATTTCA
GTATTTTGGTATTTGCGGTCTACCCAGTGTTTTCTCGCTGTCCGAAGAGTTCTCGTTATACCAAG
TTTCTCTACACCCAGTTTCTCTACACCAATTTTCTCTCCACCAATTTTCTCTACACCAACCTCTC
TCCACCAAGTTTCTCTCCACCAAGTTTCTCTCCACCAAGTTTCTCTACCCCAACCGTTCTCTCTC
TGCACCGTGTCTCACAATGGCTCCCCTGCTACACGATCTCAACCCTAGTGCATTGTCACCGCTTC
CCCTCAACTAAAACTCTAATTATAGCAGAACAATGTGGGGCAGTG
Found at i:48419 original size:18 final size:18
Alignment explanation
Indices: 48390--48479 Score: 114
Period size: 18 Copynumber: 5.0 Consensus size: 18
48380 TCTGATGTGT
*
48390 CTGTTGGTGCCCGTCGTGC
1 CTGTT-GTGCCCGACGTGC
48409 CTGTTGTGCCCGACGTG-
1 CTGTTGTGCCCGACGTGC
48426 CTG--GTGCCCGACGTGC
1 CTGTTGTGCCCGACGTGC
48442 CTGTTGTGCCCGACGTGC
1 CTGTTGTGCCCGACGTGC
*
48460 CTGTTGGTGCTCAGACGTGC
1 CTGTT-GTGC-CCGACGTGC
48480 TTACGATGTC
Statistics
Matches: 64, Mismatches: 2, Indels: 9
0.85 0.03 0.12
Matches are distributed among these distances:
15 12 0.19
16 3 0.05
17 3 0.05
18 29 0.45
19 9 0.14
20 8 0.12
ACGTcount: A:0.06, C:0.31, G:0.36, T:0.28
Consensus pattern (18 bp):
CTGTTGTGCCCGACGTGC
Left flanking sequence: Indices 47890 -- 48389
GTGACGGTGAGGTGGTTTCTTCGCTGAGTCTGTCTACAGAAAATGTCTAGCTTCGTAAGTTTCTT
TGGCCAGCGTGATGTCTTCGGTTTCTTCTTTGGTGTCTTATCGGTCTTCGGTGAGGTATTTTCTT
CTGTGGGTAATATTCTAAAGTCAGTTGTGCCTTTTGTGGACATGAGTAATGTCCACGCAATGATT
AGTTGCGAGCCGCCTGGGGTTAGGTGAAGGTTTGAAAGCAATGATGTCTGGTACGTTCTCAGTGT
CGCATGTGTAATTTTTCAAAGAGCTCTGTGCCCTGCCCGTGGCCTTAAGCCCTGTCAGTGAGTCC
TATACGCTTTGTGCTCTTGTGCCCTGCCCGTATGTCCTTTAAACTTTATGCTCTTACTCTTAGGC
CTTTATGCTCTTGCTCTTAGGCCTTTCTGTATGTTCTGTCTGCCTTTTGTCCGTCCTTCGTTTAG
TGTTCTCTGTGTCTGATCGATGTGTCTGTGGGTGTTCTGATGTGT
Right flanking sequence: Indices 48480 -- 48979
TTACGATGTCTCTCGATTTCAGTATTTTGGTATTTGCGGTCTACCCAGTGTTTTCTCGCTGTCCG
AAGAGTTCTCGTTATACCAAGTTTCTCTACACCCAGTTTCTCTACACCAATTTTCTCTCCACCAA
TTTTCTCTACACCAACCTCTCTCCACCAAGTTTCTCTCCACCAAGTTTCTCTCCACCAAGTTTCT
CTACCCCAACCGTTCTCTCTCTGCACCGTGTCTCACAATGGCTCCCCTGCTACACGATCTCAACC
CTAGTGCATTGTCACCGCTTCCCCTCAACTAAAACTCTAATTATAGCAGAACAATGTGGGGCAGT
GGTTCCCTGGCGAGCGAAGCCCGAGGTCACGGCCCGACGCACACCACGAGATATATGCACCTCCA
GTTTGTGGTGTTTCACCTCCATCAGATGAGCTCGGCAGCCCGTGCTGCCAAGGGCTCGGCTATCG
CATGCTGCCTGTGCAGCGGGCGTGCTTGGTGCCCCTCCAGCTGGC
Found at i:48441 original size:33 final size:33
Alignment explanation
Indices: 48394--48459 Score: 123
Period size: 33 Copynumber: 2.0 Consensus size: 33
48384 ATGTGTCTGT
*
48394 TGGTGCCCGTCGTGCCTGTTGTGCCCGACGTGC
1 TGGTGCCCGACGTGCCTGTTGTGCCCGACGTGC
48427 TGGTGCCCGACGTGCCTGTTGTGCCCGACGTGC
1 TGGTGCCCGACGTGCCTGTTGTGCCCGACGTGC
48460 CTGTTGGTGC
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.05, C:0.33, G:0.36, T:0.26
Consensus pattern (33 bp):
TGGTGCCCGACGTGCCTGTTGTGCCCGACGTGC
Left flanking sequence: Indices 47894 -- 48393
CGGTGAGGTGGTTTCTTCGCTGAGTCTGTCTACAGAAAATGTCTAGCTTCGTAAGTTTCTTTGGC
CAGCGTGATGTCTTCGGTTTCTTCTTTGGTGTCTTATCGGTCTTCGGTGAGGTATTTTCTTCTGT
GGGTAATATTCTAAAGTCAGTTGTGCCTTTTGTGGACATGAGTAATGTCCACGCAATGATTAGTT
GCGAGCCGCCTGGGGTTAGGTGAAGGTTTGAAAGCAATGATGTCTGGTACGTTCTCAGTGTCGCA
TGTGTAATTTTTCAAAGAGCTCTGTGCCCTGCCCGTGGCCTTAAGCCCTGTCAGTGAGTCCTATA
CGCTTTGTGCTCTTGTGCCCTGCCCGTATGTCCTTTAAACTTTATGCTCTTACTCTTAGGCCTTT
ATGCTCTTGCTCTTAGGCCTTTCTGTATGTTCTGTCTGCCTTTTGTCCGTCCTTCGTTTAGTGTT
CTCTGTGTCTGATCGATGTGTCTGTGGGTGTTCTGATGTGTCTGT
Right flanking sequence: Indices 48460 -- 48959
CTGTTGGTGCTCAGACGTGCTTACGATGTCTCTCGATTTCAGTATTTTGGTATTTGCGGTCTACC
CAGTGTTTTCTCGCTGTCCGAAGAGTTCTCGTTATACCAAGTTTCTCTACACCCAGTTTCTCTAC
ACCAATTTTCTCTCCACCAATTTTCTCTACACCAACCTCTCTCCACCAAGTTTCTCTCCACCAAG
TTTCTCTCCACCAAGTTTCTCTACCCCAACCGTTCTCTCTCTGCACCGTGTCTCACAATGGCTCC
CCTGCTACACGATCTCAACCCTAGTGCATTGTCACCGCTTCCCCTCAACTAAAACTCTAATTATA
GCAGAACAATGTGGGGCAGTGGTTCCCTGGCGAGCGAAGCCCGAGGTCACGGCCCGACGCACACC
ACGAGATATATGCACCTCCAGTTTGTGGTGTTTCACCTCCATCAGATGAGCTCGGCAGCCCGTGC
TGCCAAGGGCTCGGCTATCGCATGCTGCCTGTGCAGCGGGCGTGC
Found at i:48584 original size:15 final size:15
Alignment explanation
Indices: 48560--48683 Score: 151
Period size: 15 Copynumber: 8.3 Consensus size: 15
48550 TTCTCGTTAT
48560 ACCAAGTTTCTCTAC
1 ACCAAGTTTCTCTAC
*
48575 ACCCAGTTTCTCTAC
1 ACCAAGTTTCTCTAC
* *
48590 ACCAATTTTCTCTCC
1 ACCAAGTTTCTCTAC
*
48605 ACCAATTTTCTCTAC
1 ACCAAGTTTCTCTAC
** *
48620 ACCAA-CCTCTCTCC
1 ACCAAGTTTCTCTAC
*
48634 ACCAAGTTTCTCTCC
1 ACCAAGTTTCTCTAC
*
48649 ACCAAGTTTCTCTCC
1 ACCAAGTTTCTCTAC
48664 ACCAAGTTTCTCTAC
1 ACCAAGTTTCTCTAC
*
48679 CCCAA
1 ACCAA
48684 CCGTTCTCTC
Statistics
Matches: 96, Mismatches: 12, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
14 11 0.11
15 85 0.89
ACGTcount: A:0.23, C:0.40, G:0.04, T:0.32
Consensus pattern (15 bp):
ACCAAGTTTCTCTAC
Left flanking sequence: Indices 48060 -- 48559
CATGAGTAATGTCCACGCAATGATTAGTTGCGAGCCGCCTGGGGTTAGGTGAAGGTTTGAAAGCA
ATGATGTCTGGTACGTTCTCAGTGTCGCATGTGTAATTTTTCAAAGAGCTCTGTGCCCTGCCCGT
GGCCTTAAGCCCTGTCAGTGAGTCCTATACGCTTTGTGCTCTTGTGCCCTGCCCGTATGTCCTTT
AAACTTTATGCTCTTACTCTTAGGCCTTTATGCTCTTGCTCTTAGGCCTTTCTGTATGTTCTGTC
TGCCTTTTGTCCGTCCTTCGTTTAGTGTTCTCTGTGTCTGATCGATGTGTCTGTGGGTGTTCTGA
TGTGTCTGTTGGTGCCCGTCGTGCCTGTTGTGCCCGACGTGCTGGTGCCCGACGTGCCTGTTGTG
CCCGACGTGCCTGTTGGTGCTCAGACGTGCTTACGATGTCTCTCGATTTCAGTATTTTGGTATTT
GCGGTCTACCCAGTGTTTTCTCGCTGTCCGAAGAGTTCTCGTTAT
Right flanking sequence: Indices 48684 -- 49183
CCGTTCTCTCTCTGCACCGTGTCTCACAATGGCTCCCCTGCTACACGATCTCAACCCTAGTGCAT
TGTCACCGCTTCCCCTCAACTAAAACTCTAATTATAGCAGAACAATGTGGGGCAGTGGTTCCCTG
GCGAGCGAAGCCCGAGGTCACGGCCCGACGCACACCACGAGATATATGCACCTCCAGTTTGTGGT
GTTTCACCTCCATCAGATGAGCTCGGCAGCCCGTGCTGCCAAGGGCTCGGCTATCGCATGCTGCC
TGTGCAGCGGGCGTGCTTGGTGCCCCTCCAGCTGGCGAGGCTTTGCTGTGTCCACCGACACCTGC
ATGTGTATGCACGGGTGGGGTGGCAGCGAACCCGAGCGAACAACGGGCTGCTCAGACGAAAGCTT
AACCCGAGGGTTTGGGTGGTCCAGGTGCAGTTTGCCATCGAAAAAGCTTAATCGGGATCGCCATC
ACATGGTGGCGAACTTTATGCAAGATAGCCAGCACCAATGGGCAC
Found at i:48594 original size:30 final size:30
Alignment explanation
Indices: 48560--48683 Score: 169
Period size: 30 Copynumber: 4.2 Consensus size: 30
48550 TTCTCGTTAT
* *
48560 ACCAAGTTTCTCTACACCCAGTTTCTCTAC
1 ACCAAGTTTCTCTCCACCAAGTTTCTCTAC
* *
48590 ACCAATTTTCTCTCCACCAATTTTCTCTAC
1 ACCAAGTTTCTCTCCACCAAGTTTCTCTAC
** *
48620 ACCAA-CCTCTCTCCACCAAGTTTCTCTCC
1 ACCAAGTTTCTCTCCACCAAGTTTCTCTAC
48649 ACCAAGTTTCTCTCCACCAAGTTTCTCTAC
1 ACCAAGTTTCTCTCCACCAAGTTTCTCTAC
*
48679 CCCAA
1 ACCAA
48684 CCGTTCTCTC
Statistics
Matches: 81, Mismatches: 12, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
29 25 0.31
30 56 0.69
ACGTcount: A:0.23, C:0.40, G:0.04, T:0.32
Consensus pattern (30 bp):
ACCAAGTTTCTCTCCACCAAGTTTCTCTAC
Left flanking sequence: Indices 48060 -- 48559
CATGAGTAATGTCCACGCAATGATTAGTTGCGAGCCGCCTGGGGTTAGGTGAAGGTTTGAAAGCA
ATGATGTCTGGTACGTTCTCAGTGTCGCATGTGTAATTTTTCAAAGAGCTCTGTGCCCTGCCCGT
GGCCTTAAGCCCTGTCAGTGAGTCCTATACGCTTTGTGCTCTTGTGCCCTGCCCGTATGTCCTTT
AAACTTTATGCTCTTACTCTTAGGCCTTTATGCTCTTGCTCTTAGGCCTTTCTGTATGTTCTGTC
TGCCTTTTGTCCGTCCTTCGTTTAGTGTTCTCTGTGTCTGATCGATGTGTCTGTGGGTGTTCTGA
TGTGTCTGTTGGTGCCCGTCGTGCCTGTTGTGCCCGACGTGCTGGTGCCCGACGTGCCTGTTGTG
CCCGACGTGCCTGTTGGTGCTCAGACGTGCTTACGATGTCTCTCGATTTCAGTATTTTGGTATTT
GCGGTCTACCCAGTGTTTTCTCGCTGTCCGAAGAGTTCTCGTTAT
Right flanking sequence: Indices 48684 -- 49183
CCGTTCTCTCTCTGCACCGTGTCTCACAATGGCTCCCCTGCTACACGATCTCAACCCTAGTGCAT
TGTCACCGCTTCCCCTCAACTAAAACTCTAATTATAGCAGAACAATGTGGGGCAGTGGTTCCCTG
GCGAGCGAAGCCCGAGGTCACGGCCCGACGCACACCACGAGATATATGCACCTCCAGTTTGTGGT
GTTTCACCTCCATCAGATGAGCTCGGCAGCCCGTGCTGCCAAGGGCTCGGCTATCGCATGCTGCC
TGTGCAGCGGGCGTGCTTGGTGCCCCTCCAGCTGGCGAGGCTTTGCTGTGTCCACCGACACCTGC
ATGTGTATGCACGGGTGGGGTGGCAGCGAACCCGAGCGAACAACGGGCTGCTCAGACGAAAGCTT
AACCCGAGGGTTTGGGTGGTCCAGGTGCAGTTTGCCATCGAAAAAGCTTAATCGGGATCGCCATC
ACATGGTGGCGAACTTTATGCAAGATAGCCAGCACCAATGGGCAC
Found at i:48645 original size:44 final size:44
Alignment explanation
Indices: 48560--48668 Score: 146
Period size: 44 Copynumber: 2.5 Consensus size: 44
48550 TTCTCGTTAT
*** *
48560 ACCAAGTTTCTCTACACCCAGTTTCTCTACACCAATTTTCTCTCC
1 ACCAAGTTTCTCTACA-CCAACCTCTCTACACCAAGTTTCTCTCC
* *
48605 ACCAATTTTCTCTACACCAACCTCTCTCCACCAAGTTTCTCTCC
1 ACCAAGTTTCTCTACACCAACCTCTCTACACCAAGTTTCTCTCC
*
48649 ACCAAGTTTCTCTCCACCAA
1 ACCAAGTTTCTCTACACCAA
48669 GTTTCTCTAC
Statistics
Matches: 56, Mismatches: 8, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
44 41 0.73
45 15 0.27
ACGTcount: A:0.24, C:0.40, G:0.04, T:0.32
Consensus pattern (44 bp):
ACCAAGTTTCTCTACACCAACCTCTCTACACCAAGTTTCTCTCC
Left flanking sequence: Indices 48060 -- 48559
CATGAGTAATGTCCACGCAATGATTAGTTGCGAGCCGCCTGGGGTTAGGTGAAGGTTTGAAAGCA
ATGATGTCTGGTACGTTCTCAGTGTCGCATGTGTAATTTTTCAAAGAGCTCTGTGCCCTGCCCGT
GGCCTTAAGCCCTGTCAGTGAGTCCTATACGCTTTGTGCTCTTGTGCCCTGCCCGTATGTCCTTT
AAACTTTATGCTCTTACTCTTAGGCCTTTATGCTCTTGCTCTTAGGCCTTTCTGTATGTTCTGTC
TGCCTTTTGTCCGTCCTTCGTTTAGTGTTCTCTGTGTCTGATCGATGTGTCTGTGGGTGTTCTGA
TGTGTCTGTTGGTGCCCGTCGTGCCTGTTGTGCCCGACGTGCTGGTGCCCGACGTGCCTGTTGTG
CCCGACGTGCCTGTTGGTGCTCAGACGTGCTTACGATGTCTCTCGATTTCAGTATTTTGGTATTT
GCGGTCTACCCAGTGTTTTCTCGCTGTCCGAAGAGTTCTCGTTAT
Right flanking sequence: Indices 48669 -- 49168
GTTTCTCTACCCCAACCGTTCTCTCTCTGCACCGTGTCTCACAATGGCTCCCCTGCTACACGATC
TCAACCCTAGTGCATTGTCACCGCTTCCCCTCAACTAAAACTCTAATTATAGCAGAACAATGTGG
GGCAGTGGTTCCCTGGCGAGCGAAGCCCGAGGTCACGGCCCGACGCACACCACGAGATATATGCA
CCTCCAGTTTGTGGTGTTTCACCTCCATCAGATGAGCTCGGCAGCCCGTGCTGCCAAGGGCTCGG
CTATCGCATGCTGCCTGTGCAGCGGGCGTGCTTGGTGCCCCTCCAGCTGGCGAGGCTTTGCTGTG
TCCACCGACACCTGCATGTGTATGCACGGGTGGGGTGGCAGCGAACCCGAGCGAACAACGGGCTG
CTCAGACGAAAGCTTAACCCGAGGGTTTGGGTGGTCCAGGTGCAGTTTGCCATCGAAAAAGCTTA
ATCGGGATCGCCATCACATGGTGGCGAACTTTATGCAAGATAGCC
Found at i:48645 original size:59 final size:59
Alignment explanation
Indices: 48568--48685 Score: 182
Period size: 59 Copynumber: 2.0 Consensus size: 59
48558 ATACCAAGTT
* * *
48568 TCTCTACACCCAGTTTCTCTACACCAATTTTCTCTCCACCAATTTTCTCTACACCAACC
1 TCTCTACACCAAGTTTCTCTACACCAAGTTTCTCTCCACCAAGTTTCTCTACACCAACC
* * *
48627 TCTCTCCACCAAGTTTCTCTCCACCAAGTTTCTCTCCACCAAGTTTCTCTACCCCAACC
1 TCTCTACACCAAGTTTCTCTACACCAAGTTTCTCTCCACCAAGTTTCTCTACACCAACC
48686 GTTCTCTCTC
Statistics
Matches: 53, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
59 53 1.00
ACGTcount: A:0.22, C:0.42, G:0.03, T:0.32
Consensus pattern (59 bp):
TCTCTACACCAAGTTTCTCTACACCAAGTTTCTCTCCACCAAGTTTCTCTACACCAACC
Left flanking sequence: Indices 48068 -- 48567
ATGTCCACGCAATGATTAGTTGCGAGCCGCCTGGGGTTAGGTGAAGGTTTGAAAGCAATGATGTC
TGGTACGTTCTCAGTGTCGCATGTGTAATTTTTCAAAGAGCTCTGTGCCCTGCCCGTGGCCTTAA
GCCCTGTCAGTGAGTCCTATACGCTTTGTGCTCTTGTGCCCTGCCCGTATGTCCTTTAAACTTTA
TGCTCTTACTCTTAGGCCTTTATGCTCTTGCTCTTAGGCCTTTCTGTATGTTCTGTCTGCCTTTT
GTCCGTCCTTCGTTTAGTGTTCTCTGTGTCTGATCGATGTGTCTGTGGGTGTTCTGATGTGTCTG
TTGGTGCCCGTCGTGCCTGTTGTGCCCGACGTGCTGGTGCCCGACGTGCCTGTTGTGCCCGACGT
GCCTGTTGGTGCTCAGACGTGCTTACGATGTCTCTCGATTTCAGTATTTTGGTATTTGCGGTCTA
CCCAGTGTTTTCTCGCTGTCCGAAGAGTTCTCGTTATACCAAGTT
Right flanking sequence: Indices 48686 -- 49185
GTTCTCTCTCTGCACCGTGTCTCACAATGGCTCCCCTGCTACACGATCTCAACCCTAGTGCATTG
TCACCGCTTCCCCTCAACTAAAACTCTAATTATAGCAGAACAATGTGGGGCAGTGGTTCCCTGGC
GAGCGAAGCCCGAGGTCACGGCCCGACGCACACCACGAGATATATGCACCTCCAGTTTGTGGTGT
TTCACCTCCATCAGATGAGCTCGGCAGCCCGTGCTGCCAAGGGCTCGGCTATCGCATGCTGCCTG
TGCAGCGGGCGTGCTTGGTGCCCCTCCAGCTGGCGAGGCTTTGCTGTGTCCACCGACACCTGCAT
GTGTATGCACGGGTGGGGTGGCAGCGAACCCGAGCGAACAACGGGCTGCTCAGACGAAAGCTTAA
CCCGAGGGTTTGGGTGGTCCAGGTGCAGTTTGCCATCGAAAAAGCTTAATCGGGATCGCCATCAC
ATGGTGGCGAACTTTATGCAAGATAGCCAGCACCAATGGGCACCC
Found at i:49339 original size:11 final size:11
Alignment explanation
Indices: 49323--49348 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
49313 GGGGGACGGG
49323 ACGGGTAAAGA
1 ACGGGTAAAGA
49334 ACGGGTAAAGA
1 ACGGGTAAAGA
49345 ACGG
1 ACGG
49349 TGCAAAAAGG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.42, C:0.12, G:0.38, T:0.08
Consensus pattern (11 bp):
ACGGGTAAAGA
Left flanking sequence: Indices 48823 -- 49322
GCCCGAGGTCACGGCCCGACGCACACCACGAGATATATGCACCTCCAGTTTGTGGTGTTTCACCT
CCATCAGATGAGCTCGGCAGCCCGTGCTGCCAAGGGCTCGGCTATCGCATGCTGCCTGTGCAGCG
GGCGTGCTTGGTGCCCCTCCAGCTGGCGAGGCTTTGCTGTGTCCACCGACACCTGCATGTGTATG
CACGGGTGGGGTGGCAGCGAACCCGAGCGAACAACGGGCTGCTCAGACGAAAGCTTAACCCGAGG
GTTTGGGTGGTCCAGGTGCAGTTTGCCATCGAAAAAGCTTAATCGGGATCGCCATCACATGGTGG
CGAACTTTATGCAAGATAGCCAGCACCAATGGGCACCCTGCTCGCTACCAGCGAACTATTTTTTG
TCTGTGCAGAGGTATGGGACCAGTGGAAGAAACCGCCTGAAATGGCGACGTAAACAAGAGATAAG
GGGGAACACGGTGTAAAATAGAAGCGAGCGAAGGTGGGGGACGGG
Right flanking sequence: Indices 49349 -- 49848
TGCAAAAAGGTAGGAGAGAAGAGAGTGGGAGTGGATAGTGGAGGGTTTTGAGGGAAGTGTTGAGT
GTTGAGTATTGAGTGTTGAGTATTGGGTGTTGAGAATTGGGTGTTGAGTGTAGAGGTGGAGTGTG
GAAGAATGAGAGTGTAGATGGGTGTAAATGAGTGTGAATGAAGAGTGAAAAAGAGAGAACAGTAA
AGAGTCTAGAAGATTGAAGAGACTAGAGTGAAAAGAATGGAGAAGAGTAAAAACAGTGTCGGTCG
TTAGTGGCCTAGTGGTCGTTGGTCGTCGCTGGGTGGCCACGGGGCTTGGATGGTTAGGGAGCCTC
GTCCACCGTAGGCACTGGCTGTAACCAGTAGTGCCAACCGAGCACCGTGGCTTTGTGTCCGGAAG
CACCATCCGCATCCACACCAACCATGCTGCTCAGGCCCATACGAACCCTACAGCCCCCACGGTGC
TTCCCCTGGTGAAACCACCGTGGAATGCCCTCGTAAACCGCCTAC
Found at i:49416 original size:7 final size:7
Alignment explanation
Indices: 49404--49477 Score: 69
Period size: 7 Copynumber: 10.7 Consensus size: 7
49394 TTTTGAGGGA
49404 AGTGTTG
1 AGTGTTG
49411 AGTGTTG
1 AGTGTTG
*
49418 AGTATTG
1 AGTGTTG
49425 AGTGTTG
1 AGTGTTG
*
49432 AGTATTG
1 AGTGTTG
*
49439 GGTGTTG
1 AGTGTTG
**
49446 AGAATTG
1 AGTGTTG
*
49453 GGTGTTG
1 AGTGTTG
*
49460 AGTGTAG
1 AGTGTTG
*
49467 AG-GTGG
1 AGTGTTG
49473 AGTGT
1 AGTGT
49478 GGAAGAATGA
Statistics
Matches: 52, Mismatches: 14, Indels: 2
0.76 0.21 0.03
Matches are distributed among these distances:
6 5 0.10
7 47 0.90
ACGTcount: A:0.19, C:0.00, G:0.43, T:0.38
Consensus pattern (7 bp):
AGTGTTG
Left flanking sequence: Indices 48904 -- 49403
GCAGCCCGTGCTGCCAAGGGCTCGGCTATCGCATGCTGCCTGTGCAGCGGGCGTGCTTGGTGCCC
CTCCAGCTGGCGAGGCTTTGCTGTGTCCACCGACACCTGCATGTGTATGCACGGGTGGGGTGGCA
GCGAACCCGAGCGAACAACGGGCTGCTCAGACGAAAGCTTAACCCGAGGGTTTGGGTGGTCCAGG
TGCAGTTTGCCATCGAAAAAGCTTAATCGGGATCGCCATCACATGGTGGCGAACTTTATGCAAGA
TAGCCAGCACCAATGGGCACCCTGCTCGCTACCAGCGAACTATTTTTTGTCTGTGCAGAGGTATG
GGACCAGTGGAAGAAACCGCCTGAAATGGCGACGTAAACAAGAGATAAGGGGGAACACGGTGTAA
AATAGAAGCGAGCGAAGGTGGGGGACGGGACGGGTAAAGAACGGGTAAAGAACGGTGCAAAAAGG
TAGGAGAGAAGAGAGTGGGAGTGGATAGTGGAGGGTTTTGAGGGA
Right flanking sequence: Indices 49478 -- 49977
GGAAGAATGAGAGTGTAGATGGGTGTAAATGAGTGTGAATGAAGAGTGAAAAAGAGAGAACAGTA
AAGAGTCTAGAAGATTGAAGAGACTAGAGTGAAAAGAATGGAGAAGAGTAAAAACAGTGTCGGTC
GTTAGTGGCCTAGTGGTCGTTGGTCGTCGCTGGGTGGCCACGGGGCTTGGATGGTTAGGGAGCCT
CGTCCACCGTAGGCACTGGCTGTAACCAGTAGTGCCAACCGAGCACCGTGGCTTTGTGTCCGGAA
GCACCATCCGCATCCACACCAACCATGCTGCTCAGGCCCATACGAACCCTACAGCCCCCACGGTG
CTTCCCCTGGTGAAACCACCGTGGAATGCCCTCGTAAACCGCCTACTATGAGCCTCGGTCCGTGT
CAGCGGAGATAATCTCGGACTAACCCCGTGCGGGCTCTGCAGTGTCGGTGGTGCATGGCCAGAGG
CATCGCTCGCTCGCTTGGCGGCCCGCCAGCGTGCTGACACTGAAG
Found at i:49427 original size:14 final size:14
Alignment explanation
Indices: 49408--49462 Score: 83
Period size: 14 Copynumber: 3.9 Consensus size: 14
49398 GAGGGAAGTG
49408 TTGAGTGTTGAGTA
1 TTGAGTGTTGAGTA
49422 TTGAGTGTTGAGTA
1 TTGAGTGTTGAGTA
* *
49436 TTGGGTGTTGAGAA
1 TTGAGTGTTGAGTA
*
49450 TTGGGTGTTGAGT
1 TTGAGTGTTGAGT
49463 GTAGAGGTGG
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
14 38 1.00
ACGTcount: A:0.18, C:0.00, G:0.40, T:0.42
Consensus pattern (14 bp):
TTGAGTGTTGAGTA
Left flanking sequence: Indices 48908 -- 49407
CCCGTGCTGCCAAGGGCTCGGCTATCGCATGCTGCCTGTGCAGCGGGCGTGCTTGGTGCCCCTCC
AGCTGGCGAGGCTTTGCTGTGTCCACCGACACCTGCATGTGTATGCACGGGTGGGGTGGCAGCGA
ACCCGAGCGAACAACGGGCTGCTCAGACGAAAGCTTAACCCGAGGGTTTGGGTGGTCCAGGTGCA
GTTTGCCATCGAAAAAGCTTAATCGGGATCGCCATCACATGGTGGCGAACTTTATGCAAGATAGC
CAGCACCAATGGGCACCCTGCTCGCTACCAGCGAACTATTTTTTGTCTGTGCAGAGGTATGGGAC
CAGTGGAAGAAACCGCCTGAAATGGCGACGTAAACAAGAGATAAGGGGGAACACGGTGTAAAATA
GAAGCGAGCGAAGGTGGGGGACGGGACGGGTAAAGAACGGGTAAAGAACGGTGCAAAAAGGTAGG
AGAGAAGAGAGTGGGAGTGGATAGTGGAGGGTTTTGAGGGAAGTG
Right flanking sequence: Indices 49463 -- 49962
GTAGAGGTGGAGTGTGGAAGAATGAGAGTGTAGATGGGTGTAAATGAGTGTGAATGAAGAGTGAA
AAAGAGAGAACAGTAAAGAGTCTAGAAGATTGAAGAGACTAGAGTGAAAAGAATGGAGAAGAGTA
AAAACAGTGTCGGTCGTTAGTGGCCTAGTGGTCGTTGGTCGTCGCTGGGTGGCCACGGGGCTTGG
ATGGTTAGGGAGCCTCGTCCACCGTAGGCACTGGCTGTAACCAGTAGTGCCAACCGAGCACCGTG
GCTTTGTGTCCGGAAGCACCATCCGCATCCACACCAACCATGCTGCTCAGGCCCATACGAACCCT
ACAGCCCCCACGGTGCTTCCCCTGGTGAAACCACCGTGGAATGCCCTCGTAAACCGCCTACTATG
AGCCTCGGTCCGTGTCAGCGGAGATAATCTCGGACTAACCCCGTGCGGGCTCTGCAGTGTCGGTG
GTGCATGGCCAGAGGCATCGCTCGCTCGCTTGGCGGCCCGCCAGC
Found at i:50433 original size:11 final size:11
Alignment explanation
Indices: 50417--50452 Score: 63
Period size: 11 Copynumber: 3.3 Consensus size: 11
50407 CTCGACAATT
50417 CTCGCACAGTC
1 CTCGCACAGTC
50428 CTCGCACAGTC
1 CTCGCACAGTC
*
50439 CTCGCACCGTC
1 CTCGCACAGTC
50450 CTC
1 CTC
50453 CATCAATCCT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
11 24 1.00
ACGTcount: A:0.14, C:0.50, G:0.17, T:0.19
Consensus pattern (11 bp):
CTCGCACAGTC
Left flanking sequence: Indices 49917 -- 50416
GGTGCATGGCCAGAGGCATCGCTCGCTCGCTTGGCGGCCCGCCAGCGTGCTGACACTGAAGGGCC
CCCCTCGGGTGGCGGACGGCGTCCGCGTTGCTTTTCTCTCGTTTGATCTGCCCCTGGGACGCACC
CGCGACACTGTGGCGCCACGGCTCGTGGGCCCGTAGAAGACGCACCCGGTGGGGGGACCGCCCGA
GCAGACAGCGACGGCAGCGGGGGACGCTCCAGAAGCCCTTGGCGACAGCGAACCTTTTTGTCGCC
GGCGAAGGTTGTGCCTTGCCAGATGCAAGGCACTATTATCCCCCACCGATCGACCAGGCACCAGG
CACTCGGAAGGAACGATGCGACGAAGGATGGTGCGTGATCGTCGTGGTGGAGGCGGTTCACGGTT
ATTGGCGGAGCGAGCCATCGGGAAGCCTATTACGGAAGCACTATCGAGCCCATCGGGCTAGATGG
TAGGCTTGGTTTACTGCACACCACACCACACTACACTCGACAATT
Right flanking sequence: Indices 50453 -- 50952
CATCAATCCTCCCACTTTATTTCCACCATCCGCACTCATTATCCCCTCTTCCCTCACCCATTCTC
CCCTCTTCCTCACCCAGTCCCCCCCTCTTCCCTCACTTCCACCCACCCCACCCCCACTCTTTTGT
CTCTCTTTTGTCTCACTCTAATTTTTTGTCACGAGCCCGGACGCACTAACTACTGGTCAAACAAC
AAAAAATACACATACCGATAGTCCACCGATAATAAGTCGAGCCCAATGGGGCGGAGTGCCAACGG
GACCGCTGCCACCACCACCACCACCGCCCATTGACCACCACCGCGCCCACCACCCGCCCGGCGCC
CCTCCTCCGCCCGCTCTCCTCCTCCTCCCCCACTGCCCCGCCCTCGCGCCCCATATCACCCCATA
GGGCTCGCCTTACGGAAACCCGGGTCGGGTGTGCAGCAGCCGTTTACATCGTCACCGCCAATATT
TTGTGTGACGCAAAAAAAGATTGTGTACACGCCCACATAGCAGGT
Found at i:50462 original size:22 final size:22
Alignment explanation
Indices: 50407--50463 Score: 64
Period size: 22 Copynumber: 2.6 Consensus size: 22
50397 CCACACTACA
*
50407 CTCG-ACAATTCTCGCACAGTC
1 CTCGCACAATCCTCGCACAGTC
* *
50428 CTCGCACAGTCCTCGCACCGTC
1 CTCGCACAATCCTCGCACAGTC
50450 CTC-CATCAATCCTC
1 CTCGCA-CAATCCTC
50464 CCACTTTATT
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
21 6 0.20
22 24 0.80
ACGTcount: A:0.19, C:0.46, G:0.12, T:0.23
Consensus pattern (22 bp):
CTCGCACAATCCTCGCACAGTC
Left flanking sequence: Indices 49907 -- 50406
CAGTGTCGGTGGTGCATGGCCAGAGGCATCGCTCGCTCGCTTGGCGGCCCGCCAGCGTGCTGACA
CTGAAGGGCCCCCCTCGGGTGGCGGACGGCGTCCGCGTTGCTTTTCTCTCGTTTGATCTGCCCCT
GGGACGCACCCGCGACACTGTGGCGCCACGGCTCGTGGGCCCGTAGAAGACGCACCCGGTGGGGG
GACCGCCCGAGCAGACAGCGACGGCAGCGGGGGACGCTCCAGAAGCCCTTGGCGACAGCGAACCT
TTTTGTCGCCGGCGAAGGTTGTGCCTTGCCAGATGCAAGGCACTATTATCCCCCACCGATCGACC
AGGCACCAGGCACTCGGAAGGAACGATGCGACGAAGGATGGTGCGTGATCGTCGTGGTGGAGGCG
GTTCACGGTTATTGGCGGAGCGAGCCATCGGGAAGCCTATTACGGAAGCACTATCGAGCCCATCG
GGCTAGATGGTAGGCTTGGTTTACTGCACACCACACCACACTACA
Right flanking sequence: Indices 50464 -- 50963
CCACTTTATTTCCACCATCCGCACTCATTATCCCCTCTTCCCTCACCCATTCTCCCCTCTTCCTC
ACCCAGTCCCCCCCTCTTCCCTCACTTCCACCCACCCCACCCCCACTCTTTTGTCTCTCTTTTGT
CTCACTCTAATTTTTTGTCACGAGCCCGGACGCACTAACTACTGGTCAAACAACAAAAAATACAC
ATACCGATAGTCCACCGATAATAAGTCGAGCCCAATGGGGCGGAGTGCCAACGGGACCGCTGCCA
CCACCACCACCACCGCCCATTGACCACCACCGCGCCCACCACCCGCCCGGCGCCCCTCCTCCGCC
CGCTCTCCTCCTCCTCCCCCACTGCCCCGCCCTCGCGCCCCATATCACCCCATAGGGCTCGCCTT
ACGGAAACCCGGGTCGGGTGTGCAGCAGCCGTTTACATCGTCACCGCCAATATTTTGTGTGACGC
AAAAAAAGATTGTGTACACGCCCACATAGCAGGTGCAGCACATTA
Found at i:50530 original size:21 final size:22
Alignment explanation
Indices: 50489--50553 Score: 87
Period size: 22 Copynumber: 3.0 Consensus size: 22
50479 CATCCGCACT
*
50489 CATTATCCCCTCTTCCCTCACC
1 CATTCTCCCCTCTTCCCTCACC
50511 CATTCTCCCCTCTT-CCTCACC
1 CATTCTCCCCTCTTCCCTCACC
* *
50532 CAGTCCCCCCCTCTTCCCTCAC
1 CA-TTCTCCCCTCTTCCCTCAC
50554 TTCCACCCAC
Statistics
Matches: 38, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
21 9 0.24
22 23 0.61
23 6 0.16
ACGTcount: A:0.11, C:0.58, G:0.02, T:0.29
Consensus pattern (22 bp):
CATTCTCCCCTCTTCCCTCACC
Left flanking sequence: Indices 49989 -- 50488
GGTGGCGGACGGCGTCCGCGTTGCTTTTCTCTCGTTTGATCTGCCCCTGGGACGCACCCGCGACA
CTGTGGCGCCACGGCTCGTGGGCCCGTAGAAGACGCACCCGGTGGGGGGACCGCCCGAGCAGACA
GCGACGGCAGCGGGGGACGCTCCAGAAGCCCTTGGCGACAGCGAACCTTTTTGTCGCCGGCGAAG
GTTGTGCCTTGCCAGATGCAAGGCACTATTATCCCCCACCGATCGACCAGGCACCAGGCACTCGG
AAGGAACGATGCGACGAAGGATGGTGCGTGATCGTCGTGGTGGAGGCGGTTCACGGTTATTGGCG
GAGCGAGCCATCGGGAAGCCTATTACGGAAGCACTATCGAGCCCATCGGGCTAGATGGTAGGCTT
GGTTTACTGCACACCACACCACACTACACTCGACAATTCTCGCACAGTCCTCGCACAGTCCTCGC
ACCGTCCTCCATCAATCCTCCCACTTTATTTCCACCATCCGCACT
Right flanking sequence: Indices 50554 -- 51053
TTCCACCCACCCCACCCCCACTCTTTTGTCTCTCTTTTGTCTCACTCTAATTTTTTGTCACGAGC
CCGGACGCACTAACTACTGGTCAAACAACAAAAAATACACATACCGATAGTCCACCGATAATAAG
TCGAGCCCAATGGGGCGGAGTGCCAACGGGACCGCTGCCACCACCACCACCACCGCCCATTGACC
ACCACCGCGCCCACCACCCGCCCGGCGCCCCTCCTCCGCCCGCTCTCCTCCTCCTCCCCCACTGC
CCCGCCCTCGCGCCCCATATCACCCCATAGGGCTCGCCTTACGGAAACCCGGGTCGGGTGTGCAG
CAGCCGTTTACATCGTCACCGCCAATATTTTGTGTGACGCAAAAAAAGATTGTGTACACGCCCAC
ATAGCAGGTGCAGCACATTATTTTATCCGCACCTCAATATTTATTTTTCGACGCCGGTATTTTCT
AGCCTCGTTGCTGCCGAAACTGTTATAAACGAACAGTGACCCCGA
Found at i:51410 original size:11 final size:11
Alignment explanation
Indices: 51394--51434 Score: 64
Period size: 11 Copynumber: 3.5 Consensus size: 11
51384 CCACCGAGCT
51394 CAGCACCGCAC
1 CAGCACCGCAC
51405 CAGCACCGCAC
1 CAGCACCGCAC
51416 CAGCACCAGCAC
1 CAGCACC-GCAC
51428 CGAGCAC
1 C-AGCAC
51435 ACAGCTCAGC
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
11 18 0.64
12 5 0.18
13 5 0.18
ACGTcount: A:0.29, C:0.51, G:0.20, T:0.00
Consensus pattern (11 bp):
CAGCACCGCAC
Left flanking sequence: Indices 50894 -- 51393
TCACCGCCAATATTTTGTGTGACGCAAAAAAAGATTGTGTACACGCCCACATAGCAGGTGCAGCA
CATTATTTTATCCGCACCTCAATATTTATTTTTCGACGCCGGTATTTTCTAGCCTCGTTGCTGCC
GAAACTGTTATAAACGAACAGTGACCCCGAATCGCGGTTTGCATCAACGCCCTTGATTTCGCTCC
TCGTCCCCCGAGTTCCGGTTGCTGGACCCCCCCTTGCCCCGTCCCGACCCCGCGCCCCCCGTGTC
CCCGCCCCGACCCGTGTCGCGCCCGCCTGTTTGCACCCGACCCGAGTTTGCCTCCACACCTCTGG
CGGTCAGTGAGGTCCTCCCCGTGCCCAGCTCCCGACGGGCCGAATCCCGTTAGATCTCCGGTTAG
GTCTTTGGCTGTACCCGTGTACACCCAGTCCCCCTTTCGAGACCCATCGACTCCTGGTTAAGTGG
TCCTGGTCATTACAATCGAGCTCAGCTTTCAGCACCCACCGAGCT
Right flanking sequence: Indices 51435 -- 51934
ACAGCTCAGCGAACAACCAAGGCAACCACTTGAGCTGGCAGACAAAGCTAGCACAGTTGCAAATC
GGTCTGGTCTTTGGTTCCTCGACCTTCCACAACCTTCGAAGTCAGCGTTGAGACCGTTGGTCACA
CATCGTTCAAACACACTTTTGACACCGTTTGAACACCTTTGAACAGAACCACCGTTTGAACCCAC
TGTTTGAACACACCTTTGAACCCACTGTTTGAACACACCTTTGAACCCACCGTTTGAACTACTTT
ACTGTTCAGACCTACCTTTCAAACACACAACACACCGTTCAAACACCCTTGTTTGAGCAACCTTC
CGTTCTTCAACCCACCCCCCTTCGAACACAAGGCACGTTCGAACACACTCCAGTTCGAACCCTCC
TCACTCCAGTTCGAACCTCCTCCCTCACCCCCCCACCTCAACCCCTGCCCACGATTACCCCCCCG
ATTCCCTCCGCGCCCCCCGCCCCGCTCCCCCCGCAGCCGCTCGCT
Found at i:51421 original size:6 final size:6
Alignment explanation
Indices: 51394--51439 Score: 60
Period size: 6 Copynumber: 7.7 Consensus size: 6
51384 CCACCGAGCT
51394 CAGCAC C-GCAC CAGCAC C-GCAC CAGCAC CAGCAC CGAGCAC ACAGC
1 CAGCAC CAGCAC CAGCAC CAGCAC CAGCAC CAGCAC C-AGCAC -CAGC
51440 TCAGCGAACA
Statistics
Matches: 36, Mismatches: 0, Indels: 7
0.84 0.00 0.16
Matches are distributed among these distances:
5 10 0.28
6 17 0.47
7 8 0.22
8 1 0.03
ACGTcount: A:0.30, C:0.50, G:0.20, T:0.00
Consensus pattern (6 bp):
CAGCAC
Left flanking sequence: Indices 50894 -- 51393
TCACCGCCAATATTTTGTGTGACGCAAAAAAAGATTGTGTACACGCCCACATAGCAGGTGCAGCA
CATTATTTTATCCGCACCTCAATATTTATTTTTCGACGCCGGTATTTTCTAGCCTCGTTGCTGCC
GAAACTGTTATAAACGAACAGTGACCCCGAATCGCGGTTTGCATCAACGCCCTTGATTTCGCTCC
TCGTCCCCCGAGTTCCGGTTGCTGGACCCCCCCTTGCCCCGTCCCGACCCCGCGCCCCCCGTGTC
CCCGCCCCGACCCGTGTCGCGCCCGCCTGTTTGCACCCGACCCGAGTTTGCCTCCACACCTCTGG
CGGTCAGTGAGGTCCTCCCCGTGCCCAGCTCCCGACGGGCCGAATCCCGTTAGATCTCCGGTTAG
GTCTTTGGCTGTACCCGTGTACACCCAGTCCCCCTTTCGAGACCCATCGACTCCTGGTTAAGTGG
TCCTGGTCATTACAATCGAGCTCAGCTTTCAGCACCCACCGAGCT
Right flanking sequence: Indices 51440 -- 51939
TCAGCGAACAACCAAGGCAACCACTTGAGCTGGCAGACAAAGCTAGCACAGTTGCAAATCGGTCT
GGTCTTTGGTTCCTCGACCTTCCACAACCTTCGAAGTCAGCGTTGAGACCGTTGGTCACACATCG
TTCAAACACACTTTTGACACCGTTTGAACACCTTTGAACAGAACCACCGTTTGAACCCACTGTTT
GAACACACCTTTGAACCCACTGTTTGAACACACCTTTGAACCCACCGTTTGAACTACTTTACTGT
TCAGACCTACCTTTCAAACACACAACACACCGTTCAAACACCCTTGTTTGAGCAACCTTCCGTTC
TTCAACCCACCCCCCTTCGAACACAAGGCACGTTCGAACACACTCCAGTTCGAACCCTCCTCACT
CCAGTTCGAACCTCCTCCCTCACCCCCCCACCTCAACCCCTGCCCACGATTACCCCCCCGATTCC
CTCCGCGCCCCCCGCCCCGCTCCCCCCGCAGCCGCTCGCTCCCCA
Found at i:51421 original size:17 final size:16
Alignment explanation
Indices: 51396--51429 Score: 59
Period size: 17 Copynumber: 2.1 Consensus size: 16
51386 ACCGAGCTCA
51396 GCACCGCACCAGCACC
1 GCACCGCACCAGCACC
51412 GCACCAGCACCAGCACC
1 GCACC-GCACCAGCACC
51429 G
1 G
51430 AGCACACAGC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 5 0.29
17 12 0.71
ACGTcount: A:0.26, C:0.53, G:0.21, T:0.00
Consensus pattern (16 bp):
GCACCGCACCAGCACC
Left flanking sequence: Indices 50896 -- 51395
ACCGCCAATATTTTGTGTGACGCAAAAAAAGATTGTGTACACGCCCACATAGCAGGTGCAGCACA
TTATTTTATCCGCACCTCAATATTTATTTTTCGACGCCGGTATTTTCTAGCCTCGTTGCTGCCGA
AACTGTTATAAACGAACAGTGACCCCGAATCGCGGTTTGCATCAACGCCCTTGATTTCGCTCCTC
GTCCCCCGAGTTCCGGTTGCTGGACCCCCCCTTGCCCCGTCCCGACCCCGCGCCCCCCGTGTCCC
CGCCCCGACCCGTGTCGCGCCCGCCTGTTTGCACCCGACCCGAGTTTGCCTCCACACCTCTGGCG
GTCAGTGAGGTCCTCCCCGTGCCCAGCTCCCGACGGGCCGAATCCCGTTAGATCTCCGGTTAGGT
CTTTGGCTGTACCCGTGTACACCCAGTCCCCCTTTCGAGACCCATCGACTCCTGGTTAAGTGGTC
CTGGTCATTACAATCGAGCTCAGCTTTCAGCACCCACCGAGCTCA
Right flanking sequence: Indices 51430 -- 51929
AGCACACAGCTCAGCGAACAACCAAGGCAACCACTTGAGCTGGCAGACAAAGCTAGCACAGTTGC
AAATCGGTCTGGTCTTTGGTTCCTCGACCTTCCACAACCTTCGAAGTCAGCGTTGAGACCGTTGG
TCACACATCGTTCAAACACACTTTTGACACCGTTTGAACACCTTTGAACAGAACCACCGTTTGAA
CCCACTGTTTGAACACACCTTTGAACCCACTGTTTGAACACACCTTTGAACCCACCGTTTGAACT
ACTTTACTGTTCAGACCTACCTTTCAAACACACAACACACCGTTCAAACACCCTTGTTTGAGCAA
CCTTCCGTTCTTCAACCCACCCCCCTTCGAACACAAGGCACGTTCGAACACACTCCAGTTCGAAC
CCTCCTCACTCCAGTTCGAACCTCCTCCCTCACCCCCCCACCTCAACCCCTGCCCACGATTACCC
CCCCGATTCCCTCCGCGCCCCCCGCCCCGCTCCCCCCGCAGCCGC
Found at i:51634 original size:13 final size:12
Alignment explanation
Indices: 51617--51688 Score: 81
Period size: 13 Copynumber: 5.8 Consensus size: 12
51607 ACAGAACCAC
51617 CGTTTGAACCCA
1 CGTTTGAACCCA
*
51629 CTGTTTGAACACA
1 C-GTTTGAACCCA
*
51642 CCTTTGAACCCA
1 CGTTTGAACCCA
*
51654 CTGTTTGAACACA
1 C-GTTTGAACCCA
*
51667 CCTTTGAACCCA
1 CGTTTGAACCCA
51679 CCGTTTGAAC
1 -CGTTTGAAC
51689 TACTTTACTG
Statistics
Matches: 49, Mismatches: 8, Indels: 5
0.79 0.13 0.08
Matches are distributed among these distances:
12 20 0.41
13 29 0.59
ACGTcount: A:0.26, C:0.32, G:0.14, T:0.28
Consensus pattern (12 bp):
CGTTTGAACCCA
Left flanking sequence: Indices 51117 -- 51616
CCCCCTTGCCCCGTCCCGACCCCGCGCCCCCCGTGTCCCCGCCCCGACCCGTGTCGCGCCCGCCT
GTTTGCACCCGACCCGAGTTTGCCTCCACACCTCTGGCGGTCAGTGAGGTCCTCCCCGTGCCCAG
CTCCCGACGGGCCGAATCCCGTTAGATCTCCGGTTAGGTCTTTGGCTGTACCCGTGTACACCCAG
TCCCCCTTTCGAGACCCATCGACTCCTGGTTAAGTGGTCCTGGTCATTACAATCGAGCTCAGCTT
TCAGCACCCACCGAGCTCAGCACCGCACCAGCACCGCACCAGCACCAGCACCGAGCACACAGCTC
AGCGAACAACCAAGGCAACCACTTGAGCTGGCAGACAAAGCTAGCACAGTTGCAAATCGGTCTGG
TCTTTGGTTCCTCGACCTTCCACAACCTTCGAAGTCAGCGTTGAGACCGTTGGTCACACATCGTT
CAAACACACTTTTGACACCGTTTGAACACCTTTGAACAGAACCAC
Right flanking sequence: Indices 51689 -- 52188
TACTTTACTGTTCAGACCTACCTTTCAAACACACAACACACCGTTCAAACACCCTTGTTTGAGCA
ACCTTCCGTTCTTCAACCCACCCCCCTTCGAACACAAGGCACGTTCGAACACACTCCAGTTCGAA
CCCTCCTCACTCCAGTTCGAACCTCCTCCCTCACCCCCCCACCTCAACCCCTGCCCACGATTACC
CCCCCGATTCCCTCCGCGCCCCCCGCCCCGCTCCCCCCGCAGCCGCTCGCTCCCCATGACCCGAT
GACGAAGAAGCCCGACCCCCCCGTGAAAAAGAACGCGTTCGTCCACAAGTTGTACCTGATGCTCA
ACGACCCGGGCCTCCGCCACTTGATCTGGTGGACCAACCTGAACCCGCACAACAACACCTTTGCC
CTTCACCCGGGCAAGGAGTTTGCCCTGGCGCTCACGGGGTACTTCAAGCACGGCAACGTGGCGCT
GTTTGTGCGCCAGTTGCACATGTACGGGTTCCACAAGGTCACCGA
Found at i:51647 original size:25 final size:25
Alignment explanation
Indices: 51610--51688 Score: 133
Period size: 25 Copynumber: 3.2 Consensus size: 25
51600 CCTTTGAACA
51610 GAAC-CACCGTTTGAACCCACTGTTT
1 GAACACACC-TTTGAACCCACTGTTT
51635 GAACACACCTTTGAACCCACTGTTT
1 GAACACACCTTTGAACCCACTGTTT
*
51660 GAACACACCTTTGAACCCACCGTTT
1 GAACACACCTTTGAACCCACTGTTT
51685 GAAC
1 GAAC
51689 TACTTTACTG
Statistics
Matches: 52, Mismatches: 1, Indels: 2
0.95 0.02 0.04
Matches are distributed among these distances:
25 48 0.92
26 4 0.08
ACGTcount: A:0.28, C:0.33, G:0.14, T:0.25
Consensus pattern (25 bp):
GAACACACCTTTGAACCCACTGTTT
Left flanking sequence: Indices 51110 -- 51609
CTGGACCCCCCCTTGCCCCGTCCCGACCCCGCGCCCCCCGTGTCCCCGCCCCGACCCGTGTCGCG
CCCGCCTGTTTGCACCCGACCCGAGTTTGCCTCCACACCTCTGGCGGTCAGTGAGGTCCTCCCCG
TGCCCAGCTCCCGACGGGCCGAATCCCGTTAGATCTCCGGTTAGGTCTTTGGCTGTACCCGTGTA
CACCCAGTCCCCCTTTCGAGACCCATCGACTCCTGGTTAAGTGGTCCTGGTCATTACAATCGAGC
TCAGCTTTCAGCACCCACCGAGCTCAGCACCGCACCAGCACCGCACCAGCACCAGCACCGAGCAC
ACAGCTCAGCGAACAACCAAGGCAACCACTTGAGCTGGCAGACAAAGCTAGCACAGTTGCAAATC
GGTCTGGTCTTTGGTTCCTCGACCTTCCACAACCTTCGAAGTCAGCGTTGAGACCGTTGGTCACA
CATCGTTCAAACACACTTTTGACACCGTTTGAACACCTTTGAACA
Right flanking sequence: Indices 51689 -- 52188
TACTTTACTGTTCAGACCTACCTTTCAAACACACAACACACCGTTCAAACACCCTTGTTTGAGCA
ACCTTCCGTTCTTCAACCCACCCCCCTTCGAACACAAGGCACGTTCGAACACACTCCAGTTCGAA
CCCTCCTCACTCCAGTTCGAACCTCCTCCCTCACCCCCCCACCTCAACCCCTGCCCACGATTACC
CCCCCGATTCCCTCCGCGCCCCCCGCCCCGCTCCCCCCGCAGCCGCTCGCTCCCCATGACCCGAT
GACGAAGAAGCCCGACCCCCCCGTGAAAAAGAACGCGTTCGTCCACAAGTTGTACCTGATGCTCA
ACGACCCGGGCCTCCGCCACTTGATCTGGTGGACCAACCTGAACCCGCACAACAACACCTTTGCC
CTTCACCCGGGCAAGGAGTTTGCCCTGGCGCTCACGGGGTACTTCAAGCACGGCAACGTGGCGCT
GTTTGTGCGCCAGTTGCACATGTACGGGTTCCACAAGGTCACCGA
Found at i:51845 original size:20 final size:21
Alignment explanation
Indices: 51805--51846 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
51795 CGTTCGAACA
51805 CACTCCAGTTCGAACCCTCCT
1 CACTCCAGTTCGAACCCTCCT
51826 CACTCCAGTTCGAA-CCTCCT
1 CACTCCAGTTCGAACCCTCCT
51846 C
1 C
51847 CCTCACCCCC
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 7 0.33
21 14 0.67
ACGTcount: A:0.19, C:0.48, G:0.10, T:0.24
Consensus pattern (21 bp):
CACTCCAGTTCGAACCCTCCT
Left flanking sequence: Indices 51305 -- 51804
CACCCAGTCCCCCTTTCGAGACCCATCGACTCCTGGTTAAGTGGTCCTGGTCATTACAATCGAGC
TCAGCTTTCAGCACCCACCGAGCTCAGCACCGCACCAGCACCGCACCAGCACCAGCACCGAGCAC
ACAGCTCAGCGAACAACCAAGGCAACCACTTGAGCTGGCAGACAAAGCTAGCACAGTTGCAAATC
GGTCTGGTCTTTGGTTCCTCGACCTTCCACAACCTTCGAAGTCAGCGTTGAGACCGTTGGTCACA
CATCGTTCAAACACACTTTTGACACCGTTTGAACACCTTTGAACAGAACCACCGTTTGAACCCAC
TGTTTGAACACACCTTTGAACCCACTGTTTGAACACACCTTTGAACCCACCGTTTGAACTACTTT
ACTGTTCAGACCTACCTTTCAAACACACAACACACCGTTCAAACACCCTTGTTTGAGCAACCTTC
CGTTCTTCAACCCACCCCCCTTCGAACACAAGGCACGTTCGAACA
Right flanking sequence: Indices 51847 -- 52346
CCTCACCCCCCCACCTCAACCCCTGCCCACGATTACCCCCCCGATTCCCTCCGCGCCCCCCGCCC
CGCTCCCCCCGCAGCCGCTCGCTCCCCATGACCCGATGACGAAGAAGCCCGACCCCCCCGTGAAA
AAGAACGCGTTCGTCCACAAGTTGTACCTGATGCTCAACGACCCGGGCCTCCGCCACTTGATCTG
GTGGACCAACCTGAACCCGCACAACAACACCTTTGCCCTTCACCCGGGCAAGGAGTTTGCCCTGG
CGCTCACGGGGTACTTCAAGCACGGCAACGTGGCGCTGTTTGTGCGCCAGTTGCACATGTACGGG
TTCCACAAGGTCACCGAGCCCCTGGCCGGGGGCGGCGGCGGCGACGACAAGGAGCAGCCGCCGAT
GTGGGAGTTCCGCCACCTGCTGGGCAAGTTCAAGAAGGACGACGAGCTGAGCCTTGTCTACATCA
AGCGCCGGTCGCTGCTGAACACCCTGCGCCTGGCCTACGACGGCG
Found at i:52769 original size:21 final size:21
Alignment explanation
Indices: 52744--52800 Score: 78
Period size: 21 Copynumber: 2.7 Consensus size: 21
52734 AACCGGCCCA
*
52744 GGCCCAGCCGGGTCAGCCGTT
1 GGCCCAGCCCGGTCAGCCGTT
* *
52765 GGCCCAGCCCGGACAGCCTTT
1 GGCCCAGCCCGGTCAGCCGTT
*
52786 GGCCCAGCCTGGTCA
1 GGCCCAGCCCGGTCA
52801 ACCAAGCGTG
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.12, C:0.40, G:0.33, T:0.14
Consensus pattern (21 bp):
GGCCCAGCCCGGTCAGCCGTT
Left flanking sequence: Indices 52244 -- 52743
TTCCGCCACCTGCTGGGCAAGTTCAAGAAGGACGACGAGCTGAGCCTTGTCTACATCAAGCGCCG
GTCGCTGCTGAACACCCTGCGCCTGGCCTACGACGGCGTGCTGGGCCCGATGCCCCCCGGGGCGG
TCCCCGGCCCCATGCTGGCGGCGCCGGCGCCCCCCGGGTACTACCCGCCCCCGGGGCAGCCCCCC
TACTACGAGGGCCACCCCATGGTGGTGGTGGGCCCCGCGGGGCCGGTGGTGCTGCCCTACGTGCC
CTACCCGCCCCAGGGCCCCGTGTACTACTTCCAGCCGGGGGTGCCCCAGATGCCGCTGTACCCGT
ACCCGATGCTGGCGACGGCGCTGCCGGCCCAGCAGCCGGCGCCGAGGCCCATGGTGTACAAGAAC
TCGCCCCAGATGGCGCCGCAGATGGCCCCGGGGTATGGGTACGGTCACGTGGGGAGTCACGTGAT
GGCGGGCCAGCCAGGACAACCAGGTCAGCCAGGCCAACCGGCCCA
Right flanking sequence: Indices 52801 -- 53300
ACCAAGCGTGGCCCCGCTGGCCTCTCACCTGGCCCTGGCCCTGGCCCTGGCCCCCCACCTGGCCC
CGCTGGCCCCGCTGGCCCTGGCTGCACCTCTGGGTGCACCTCTGGCACCTCACCCGCCCCTGGCA
CATCCCCTGGCACACGCCCTGGCACACGCCCTGGCACCACCGCCACACGCCCTGGCACACCCGCC
GGCACCACCGCCACACCCGCTCCAGAGCCACCCCCAGTCGCAGCCGGCCGTCCCCACCCAGCCCG
ACCACTCGCCGTCCACGCGCTTGGCCCCGCTCCCCGAGTCCACCTCGCCCAACCCGGCCAAGTCG
CCCCAGGGACCCCCGGCCGCGCCCCCGTTGCTCCAGCACCACCTGGCCCCGGCCGCGCCCCACTT
CCGCAAGATCTGGCACACGGGCTCCCAGAGCTCGCCACTGTCGCGGCCCCGCAACCCGTCGTTGT
TGTACGACCCGTTGGCGCCCGCACCGCCCCACCACCAGCTGGTGG
Found at i:52839 original size:6 final size:6
Alignment explanation
Indices: 52828--52853 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
52818 TGGCCTCTCA
52828 CCTGGC CCTGGC CCTGGC CCTGGC CC
1 CCTGGC CCTGGC CCTGGC CCTGGC CC
52854 CCCACCTGGC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.00, C:0.54, G:0.31, T:0.15
Consensus pattern (6 bp):
CCTGGC
Left flanking sequence: Indices 52328 -- 52827
CGCCTGGCCTACGACGGCGTGCTGGGCCCGATGCCCCCCGGGGCGGTCCCCGGCCCCATGCTGGC
GGCGCCGGCGCCCCCCGGGTACTACCCGCCCCCGGGGCAGCCCCCCTACTACGAGGGCCACCCCA
TGGTGGTGGTGGGCCCCGCGGGGCCGGTGGTGCTGCCCTACGTGCCCTACCCGCCCCAGGGCCCC
GTGTACTACTTCCAGCCGGGGGTGCCCCAGATGCCGCTGTACCCGTACCCGATGCTGGCGACGGC
GCTGCCGGCCCAGCAGCCGGCGCCGAGGCCCATGGTGTACAAGAACTCGCCCCAGATGGCGCCGC
AGATGGCCCCGGGGTATGGGTACGGTCACGTGGGGAGTCACGTGATGGCGGGCCAGCCAGGACAA
CCAGGTCAGCCAGGCCAACCGGCCCAGGCCCAGCCGGGTCAGCCGTTGGCCCAGCCCGGACAGCC
TTTGGCCCAGCCTGGTCAACCAAGCGTGGCCCCGCTGGCCTCTCA
Right flanking sequence: Indices 52854 -- 53353
CCCACCTGGCCCCGCTGGCCCCGCTGGCCCTGGCTGCACCTCTGGGTGCACCTCTGGCACCTCAC
CCGCCCCTGGCACATCCCCTGGCACACGCCCTGGCACACGCCCTGGCACCACCGCCACACGCCCT
GGCACACCCGCCGGCACCACCGCCACACCCGCTCCAGAGCCACCCCCAGTCGCAGCCGGCCGTCC
CCACCCAGCCCGACCACTCGCCGTCCACGCGCTTGGCCCCGCTCCCCGAGTCCACCTCGCCCAAC
CCGGCCAAGTCGCCCCAGGGACCCCCGGCCGCGCCCCCGTTGCTCCAGCACCACCTGGCCCCGGC
CGCGCCCCACTTCCGCAAGATCTGGCACACGGGCTCCCAGAGCTCGCCACTGTCGCGGCCCCGCA
ACCCGTCGTTGTTGTACGACCCGTTGGCGCCCGCACCGCCCCACCACCAGCTGGTGGACGCACTG
ATGTTCCGGGGGCTGGCCCCGTTGCCGGCGGTGCTGGGGTCGCCC
Found at i:52873 original size:9 final size:9
Alignment explanation
Indices: 52859--52883 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
52849 GGCCCCCCAC
52859 CTGGCCCCG
1 CTGGCCCCG
52868 CTGGCCCCG
1 CTGGCCCCG
52877 CTGGCCC
1 CTGGCCC
52884 TGGCTGCACC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.00, C:0.56, G:0.32, T:0.12
Consensus pattern (9 bp):
CTGGCCCCG
Left flanking sequence: Indices 52359 -- 52858
TGCCCCCCGGGGCGGTCCCCGGCCCCATGCTGGCGGCGCCGGCGCCCCCCGGGTACTACCCGCCC
CCGGGGCAGCCCCCCTACTACGAGGGCCACCCCATGGTGGTGGTGGGCCCCGCGGGGCCGGTGGT
GCTGCCCTACGTGCCCTACCCGCCCCAGGGCCCCGTGTACTACTTCCAGCCGGGGGTGCCCCAGA
TGCCGCTGTACCCGTACCCGATGCTGGCGACGGCGCTGCCGGCCCAGCAGCCGGCGCCGAGGCCC
ATGGTGTACAAGAACTCGCCCCAGATGGCGCCGCAGATGGCCCCGGGGTATGGGTACGGTCACGT
GGGGAGTCACGTGATGGCGGGCCAGCCAGGACAACCAGGTCAGCCAGGCCAACCGGCCCAGGCCC
AGCCGGGTCAGCCGTTGGCCCAGCCCGGACAGCCTTTGGCCCAGCCTGGTCAACCAAGCGTGGCC
CCGCTGGCCTCTCACCTGGCCCTGGCCCTGGCCCTGGCCCCCCAC
Right flanking sequence: Indices 52884 -- 53383
TGGCTGCACCTCTGGGTGCACCTCTGGCACCTCACCCGCCCCTGGCACATCCCCTGGCACACGCC
CTGGCACACGCCCTGGCACCACCGCCACACGCCCTGGCACACCCGCCGGCACCACCGCCACACCC
GCTCCAGAGCCACCCCCAGTCGCAGCCGGCCGTCCCCACCCAGCCCGACCACTCGCCGTCCACGC
GCTTGGCCCCGCTCCCCGAGTCCACCTCGCCCAACCCGGCCAAGTCGCCCCAGGGACCCCCGGCC
GCGCCCCCGTTGCTCCAGCACCACCTGGCCCCGGCCGCGCCCCACTTCCGCAAGATCTGGCACAC
GGGCTCCCAGAGCTCGCCACTGTCGCGGCCCCGCAACCCGTCGTTGTTGTACGACCCGTTGGCGC
CCGCACCGCCCCACCACCAGCTGGTGGACGCACTGATGTTCCGGGGGCTGGCCCCGTTGCCGGCG
GTGCTGGGGTCGCCCCCGGCCCACTCGCCGCCCCCGTCCCAGGGC
Found at i:52881 original size:30 final size:27
Alignment explanation
Indices: 52809--52883 Score: 69
Period size: 30 Copynumber: 2.6 Consensus size: 27
52799 CAACCAAGCG
* *
52809 TGGCCCCGCTGGCCTCTCACCTGGCCC
1 TGGCCCCGCTGGCCCCCCACCTGGCCC
*
52836 TGGCCCTGGCCCTGGCCCCCCACCTGGCCCCGC
1 TGGCCC---CGCTGGCCCCCCACCTGG--CC-C
52869 TGGCCCCGCTGGCCC
1 TGGCCCCGCTGGCCC
52884 TGGCTGCACC
Statistics
Matches: 38, Mismatches: 4, Indels: 9
0.75 0.08 0.18
Matches are distributed among these distances:
27 6 0.16
30 23 0.61
32 2 0.05
33 7 0.18
ACGTcount: A:0.03, C:0.55, G:0.28, T:0.15
Consensus pattern (27 bp):
TGGCCCCGCTGGCCCCCCACCTGGCCC
Left flanking sequence: Indices 52309 -- 52808
GTCGCTGCTGAACACCCTGCGCCTGGCCTACGACGGCGTGCTGGGCCCGATGCCCCCCGGGGCGG
TCCCCGGCCCCATGCTGGCGGCGCCGGCGCCCCCCGGGTACTACCCGCCCCCGGGGCAGCCCCCC
TACTACGAGGGCCACCCCATGGTGGTGGTGGGCCCCGCGGGGCCGGTGGTGCTGCCCTACGTGCC
CTACCCGCCCCAGGGCCCCGTGTACTACTTCCAGCCGGGGGTGCCCCAGATGCCGCTGTACCCGT
ACCCGATGCTGGCGACGGCGCTGCCGGCCCAGCAGCCGGCGCCGAGGCCCATGGTGTACAAGAAC
TCGCCCCAGATGGCGCCGCAGATGGCCCCGGGGTATGGGTACGGTCACGTGGGGAGTCACGTGAT
GGCGGGCCAGCCAGGACAACCAGGTCAGCCAGGCCAACCGGCCCAGGCCCAGCCGGGTCAGCCGT
TGGCCCAGCCCGGACAGCCTTTGGCCCAGCCTGGTCAACCAAGCG
Right flanking sequence: Indices 52884 -- 53383
TGGCTGCACCTCTGGGTGCACCTCTGGCACCTCACCCGCCCCTGGCACATCCCCTGGCACACGCC
CTGGCACACGCCCTGGCACCACCGCCACACGCCCTGGCACACCCGCCGGCACCACCGCCACACCC
GCTCCAGAGCCACCCCCAGTCGCAGCCGGCCGTCCCCACCCAGCCCGACCACTCGCCGTCCACGC
GCTTGGCCCCGCTCCCCGAGTCCACCTCGCCCAACCCGGCCAAGTCGCCCCAGGGACCCCCGGCC
GCGCCCCCGTTGCTCCAGCACCACCTGGCCCCGGCCGCGCCCCACTTCCGCAAGATCTGGCACAC
GGGCTCCCAGAGCTCGCCACTGTCGCGGCCCCGCAACCCGTCGTTGTTGTACGACCCGTTGGCGC
CCGCACCGCCCCACCACCAGCTGGTGGACGCACTGATGTTCCGGGGGCTGGCCCCGTTGCCGGCG
GTGCTGGGGTCGCCCCCGGCCCACTCGCCGCCCCCGTCCCAGGGC
Found at i:52939 original size:12 final size:12
Alignment explanation
Indices: 52923--52990 Score: 81
Period size: 12 Copynumber: 5.9 Consensus size: 12
52913 CCTCACCCGC
52923 CCCTGGCACATC-
1 CCCTGGCACA-CG
52935 CCCTGGCACACG
1 CCCTGGCACACG
52947 CCCTGGCACACG
1 CCCTGGCACACG
52959 CCCTGGCAC-C-
1 CCCTGGCACACG
* *
52969 ACC-GCCACACG
1 CCCTGGCACACG
52980 CCCTGGCACAC
1 CCCTGGCACAC
52991 CCGCCGGCAC
Statistics
Matches: 48, Mismatches: 4, Indels: 8
0.80 0.07 0.13
Matches are distributed among these distances:
9 4 0.08
10 3 0.06
11 4 0.08
12 37 0.77
ACGTcount: A:0.18, C:0.53, G:0.21, T:0.09
Consensus pattern (12 bp):
CCCTGGCACACG
Left flanking sequence: Indices 52423 -- 52922
CCCGGGGCAGCCCCCCTACTACGAGGGCCACCCCATGGTGGTGGTGGGCCCCGCGGGGCCGGTGG
TGCTGCCCTACGTGCCCTACCCGCCCCAGGGCCCCGTGTACTACTTCCAGCCGGGGGTGCCCCAG
ATGCCGCTGTACCCGTACCCGATGCTGGCGACGGCGCTGCCGGCCCAGCAGCCGGCGCCGAGGCC
CATGGTGTACAAGAACTCGCCCCAGATGGCGCCGCAGATGGCCCCGGGGTATGGGTACGGTCACG
TGGGGAGTCACGTGATGGCGGGCCAGCCAGGACAACCAGGTCAGCCAGGCCAACCGGCCCAGGCC
CAGCCGGGTCAGCCGTTGGCCCAGCCCGGACAGCCTTTGGCCCAGCCTGGTCAACCAAGCGTGGC
CCCGCTGGCCTCTCACCTGGCCCTGGCCCTGGCCCTGGCCCCCCACCTGGCCCCGCTGGCCCCGC
TGGCCCTGGCTGCACCTCTGGGTGCACCTCTGGCACCTCACCCGC
Right flanking sequence: Indices 52991 -- 53490
CCGCCGGCACCACCGCCACACCCGCTCCAGAGCCACCCCCAGTCGCAGCCGGCCGTCCCCACCCA
GCCCGACCACTCGCCGTCCACGCGCTTGGCCCCGCTCCCCGAGTCCACCTCGCCCAACCCGGCCA
AGTCGCCCCAGGGACCCCCGGCCGCGCCCCCGTTGCTCCAGCACCACCTGGCCCCGGCCGCGCCC
CACTTCCGCAAGATCTGGCACACGGGCTCCCAGAGCTCGCCACTGTCGCGGCCCCGCAACCCGTC
GTTGTTGTACGACCCGTTGGCGCCCGCACCGCCCCACCACCAGCTGGTGGACGCACTGATGTTCC
GGGGGCTGGCCCCGTTGCCGGCGGTGCTGGGGTCGCCCCCGGCCCACTCGCCGCCCCCGTCCCAG
GGCACCCTGGTGCTGCTGGGGGCGCTGGCCGGGCTGGTTTCCGCATTGGGCCTGGCGCCGCCCAG
CGCTCCTAACCTGATTCTGGGTGGCCTGGTGATACCGCTGATCGT
Found at i:52982 original size:33 final size:33
Alignment explanation
Indices: 52941--53011 Score: 117
Period size: 33 Copynumber: 2.2 Consensus size: 33
52931 CATCCCCTGG
*
52941 CACACGCCCTGGCACACGCC-CTGGCACCACCGC
1 CACACGCCCTGGCACAC-CCGCCGGCACCACCGC
52974 CACACGCCCTGGCACACCCGCCGGCACCACCGC
1 CACACGCCCTGGCACACCCGCCGGCACCACCGC
53007 CACAC
1 CACAC
53012 CCGCTCCAGA
Statistics
Matches: 36, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
32 2 0.06
33 34 0.94
ACGTcount: A:0.20, C:0.56, G:0.20, T:0.04
Consensus pattern (33 bp):
CACACGCCCTGGCACACCCGCCGGCACCACCGC
Left flanking sequence: Indices 52441 -- 52940
CTACGAGGGCCACCCCATGGTGGTGGTGGGCCCCGCGGGGCCGGTGGTGCTGCCCTACGTGCCCT
ACCCGCCCCAGGGCCCCGTGTACTACTTCCAGCCGGGGGTGCCCCAGATGCCGCTGTACCCGTAC
CCGATGCTGGCGACGGCGCTGCCGGCCCAGCAGCCGGCGCCGAGGCCCATGGTGTACAAGAACTC
GCCCCAGATGGCGCCGCAGATGGCCCCGGGGTATGGGTACGGTCACGTGGGGAGTCACGTGATGG
CGGGCCAGCCAGGACAACCAGGTCAGCCAGGCCAACCGGCCCAGGCCCAGCCGGGTCAGCCGTTG
GCCCAGCCCGGACAGCCTTTGGCCCAGCCTGGTCAACCAAGCGTGGCCCCGCTGGCCTCTCACCT
GGCCCTGGCCCTGGCCCTGGCCCCCCACCTGGCCCCGCTGGCCCCGCTGGCCCTGGCTGCACCTC
TGGGTGCACCTCTGGCACCTCACCCGCCCCTGGCACATCCCCTGG
Right flanking sequence: Indices 53012 -- 53511
CCGCTCCAGAGCCACCCCCAGTCGCAGCCGGCCGTCCCCACCCAGCCCGACCACTCGCCGTCCAC
GCGCTTGGCCCCGCTCCCCGAGTCCACCTCGCCCAACCCGGCCAAGTCGCCCCAGGGACCCCCGG
CCGCGCCCCCGTTGCTCCAGCACCACCTGGCCCCGGCCGCGCCCCACTTCCGCAAGATCTGGCAC
ACGGGCTCCCAGAGCTCGCCACTGTCGCGGCCCCGCAACCCGTCGTTGTTGTACGACCCGTTGGC
GCCCGCACCGCCCCACCACCAGCTGGTGGACGCACTGATGTTCCGGGGGCTGGCCCCGTTGCCGG
CGGTGCTGGGGTCGCCCCCGGCCCACTCGCCGCCCCCGTCCCAGGGCACCCTGGTGCTGCTGGGG
GCGCTGGCCGGGCTGGTTTCCGCATTGGGCCTGGCGCCGCCCAGCGCTCCTAACCTGATTCTGGG
TGGCCTGGTGATACCGCTGATCGTCGACCGGCTGCCCGGGTCGCT
Found at i:52994 original size:21 final size:21
Alignment explanation
Indices: 52935--52995 Score: 70
Period size: 21 Copynumber: 2.8 Consensus size: 21
52925 CTGGCACATC
*
52935 CCCTGGCACACGCCCTGGCACACG
1 CCCTGGCACA--CCC-GCCACACG
52959 CCCTGGCAC-CACCGCCACACG
1 CCCTGGCACAC-CCGCCACACG
52980 CCCTGGCACACCCGCC
1 CCCTGGCACACCCGCC
52996 GGCACCACCG
Statistics
Matches: 34, Mismatches: 1, Indels: 7
0.81 0.02 0.17
Matches are distributed among these distances:
21 22 0.65
22 3 0.09
24 9 0.26
ACGTcount: A:0.16, C:0.56, G:0.21, T:0.07
Consensus pattern (21 bp):
CCCTGGCACACCCGCCACACG
Left flanking sequence: Indices 52435 -- 52934
CCCCTACTACGAGGGCCACCCCATGGTGGTGGTGGGCCCCGCGGGGCCGGTGGTGCTGCCCTACG
TGCCCTACCCGCCCCAGGGCCCCGTGTACTACTTCCAGCCGGGGGTGCCCCAGATGCCGCTGTAC
CCGTACCCGATGCTGGCGACGGCGCTGCCGGCCCAGCAGCCGGCGCCGAGGCCCATGGTGTACAA
GAACTCGCCCCAGATGGCGCCGCAGATGGCCCCGGGGTATGGGTACGGTCACGTGGGGAGTCACG
TGATGGCGGGCCAGCCAGGACAACCAGGTCAGCCAGGCCAACCGGCCCAGGCCCAGCCGGGTCAG
CCGTTGGCCCAGCCCGGACAGCCTTTGGCCCAGCCTGGTCAACCAAGCGTGGCCCCGCTGGCCTC
TCACCTGGCCCTGGCCCTGGCCCTGGCCCCCCACCTGGCCCCGCTGGCCCCGCTGGCCCTGGCTG
CACCTCTGGGTGCACCTCTGGCACCTCACCCGCCCCTGGCACATC
Right flanking sequence: Indices 52996 -- 53495
GGCACCACCGCCACACCCGCTCCAGAGCCACCCCCAGTCGCAGCCGGCCGTCCCCACCCAGCCCG
ACCACTCGCCGTCCACGCGCTTGGCCCCGCTCCCCGAGTCCACCTCGCCCAACCCGGCCAAGTCG
CCCCAGGGACCCCCGGCCGCGCCCCCGTTGCTCCAGCACCACCTGGCCCCGGCCGCGCCCCACTT
CCGCAAGATCTGGCACACGGGCTCCCAGAGCTCGCCACTGTCGCGGCCCCGCAACCCGTCGTTGT
TGTACGACCCGTTGGCGCCCGCACCGCCCCACCACCAGCTGGTGGACGCACTGATGTTCCGGGGG
CTGGCCCCGTTGCCGGCGGTGCTGGGGTCGCCCCCGGCCCACTCGCCGCCCCCGTCCCAGGGCAC
CCTGGTGCTGCTGGGGGCGCTGGCCGGGCTGGTTTCCGCATTGGGCCTGGCGCCGCCCAGCGCTC
CTAACCTGATTCTGGGTGGCCTGGTGATACCGCTGATCGTCGACC
Found at i:53902 original size:21 final size:21
Alignment explanation
Indices: 53876--53940 Score: 121
Period size: 21 Copynumber: 3.1 Consensus size: 21
53866 GGGCCCTCAC
*
53876 GGTCCCCATGGCTCTATCTCT
1 GGTCCCCATGGCTCTGTCTCT
53897 GGTCCCCATGGCTCTGTCTCT
1 GGTCCCCATGGCTCTGTCTCT
53918 GGTCCCCATGGCTCTGTCTCT
1 GGTCCCCATGGCTCTGTCTCT
53939 GG
1 GG
53941 CCCTGCCTCG
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
21 43 1.00
ACGTcount: A:0.06, C:0.37, G:0.25, T:0.32
Consensus pattern (21 bp):
GGTCCCCATGGCTCTGTCTCT
Left flanking sequence: Indices 53376 -- 53875
CCCAGGGCACCCTGGTGCTGCTGGGGGCGCTGGCCGGGCTGGTTTCCGCATTGGGCCTGGCGCCG
CCCAGCGCTCCTAACCTGATTCTGGGTGGCCTGGTGATACCGCTGATCGTCGACCGGCTGCCCGG
GTCGCTGGCGCGCTCGCTGACGGCCCGCCACGAGAGCACGCTGCTGCTGTTGCTGATGTCGGGCC
TGGTGCTGAGCGAGCTGCGGCTGATCAAGCTCCCGCCGCCGCTGTTGCTTGGGCTGCTGTCGTTC
AAGTTTTTGCCCGACCGGGGCGAGAACCGGCTCGACGGGATCCTCGAGCAGCTGGGGCTGCTGGT
GGCCGGCCTGGTGGCTGGGCTGGTGGCCAGTCTGGCGACCCTGGTGGCCGGCCTGGGCTCGTATG
CGGGTCCGGGCTCGTATGCCCTGGGGTCCCATGGCTCGGTGGGCTCTCATGGCTCACTACTGGGT
CCTGGCTCCCAAACGGGCTCACTTCTGGGCTCTCTGGGCCCTCAC
Right flanking sequence: Indices 53941 -- 54440
CCCTGCCTCGAGCCACCACCCCCTGGCCCTGCCTCGCACCGAGCTGCCGCCGCCCGTGGCCCGGC
TGAAGAAACTGCTCCACGAGATGTTCCGCCCGCTGTTGGTGGAGCTCCACATGAAACTGGGACCC
AGAGAGCCCGGGGCCCCGCTCGACCTGATCGACCTGGGCATGGCCCTGCTGCACAACAACCTGTT
GTTCTCCAACAAGCTGCTGATGCTGCTGGTGCTGCTGGCCAAGCGCAACCTGAGCCTCGGGTACC
CGCCGTACCAGGCCCCGGAGCTGCTGGCCACCCCCGAGGCCACCCCGCCCTACGCCGGGCGGGCG
TTGACGCCGCCCATCAAGCGCACGTCGTCGTTGGCGAAGCTCCACACCCCGGCGCCGCTCCGGCG
GTCGCAGACGACGCTGCCGGCGCTGGCGGCGCGGGCGGGCGACCTGCCTGGCGAGCCGGCGAAGC
TGAGCTTGGGGGTGGTGCTGGTGACGCTGCTCTTGGACGACGAGG
Found at i:54538 original size:16 final size:16
Alignment explanation
Indices: 54519--54557 Score: 62
Period size: 16 Copynumber: 2.4 Consensus size: 16
54509 TATCTGGCTG
54519 TCTGGTTAATTGG-TTT
1 TCTGGTTAA-TGGATTT
54535 TCTGGTTAATGGATTT
1 TCTGGTTAATGGATTT
54551 TCTGGTT
1 TCTGGTT
54558 GGTTTTCTGT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
15 3 0.14
16 19 0.86
ACGTcount: A:0.13, C:0.08, G:0.26, T:0.54
Consensus pattern (16 bp):
TCTGGTTAATGGATTT
Left flanking sequence: Indices 54019 -- 54518
CCACGAGATGTTCCGCCCGCTGTTGGTGGAGCTCCACATGAAACTGGGACCCAGAGAGCCCGGGG
CCCCGCTCGACCTGATCGACCTGGGCATGGCCCTGCTGCACAACAACCTGTTGTTCTCCAACAAG
CTGCTGATGCTGCTGGTGCTGCTGGCCAAGCGCAACCTGAGCCTCGGGTACCCGCCGTACCAGGC
CCCGGAGCTGCTGGCCACCCCCGAGGCCACCCCGCCCTACGCCGGGCGGGCGTTGACGCCGCCCA
TCAAGCGCACGTCGTCGTTGGCGAAGCTCCACACCCCGGCGCCGCTCCGGCGGTCGCAGACGACG
CTGCCGGCGCTGGCGGCGCGGGCGGGCGACCTGCCTGGCGAGCCGGCGAAGCTGAGCTTGGGGGT
GGTGCTGGTGACGCTGCTCTTGGACGACGAGGAGACGGCGTCGAAGCGGCTGCGACGGGAGTAGT
GGAAGACTAGGTGGCTGGTGGACTATTTGTCTGGTTATCTGGCTG
Right flanking sequence: Indices 54558 -- 55057
GGTTTTCTGTTTTGGACAACTAATTTCCTGGATTTTGGTTAACTGGTTGCCTAGCTGTTCACCTG
AGTTACTGGTTTACTGGTTTACTGGTGTCTAGTTATCTGAACTACTAGTATTCTAATTCTAGTTG
TCTGATTATCTGGTTTACTGTTAGCTGGTTTATACCGGATAATTAGTTACCCAGTTACTGGTTCA
CTAGTTTCTAGTACTCTGGTCTACTAGTCCTAGTTCACTTGGCTTCCAGCTCTTCCACCCTCCCT
GTTTTTAGCTTACTAGCTTTAATCACCAGTGTCTGTCTCAGTGCCTGTCTCAGTGCCCAGTCTCG
TCTAGTCTCGTGTCTCCCCGTCTCGCTGTCGGTGCCAGTGAGCCGGCACCCCTTTATGAATATGC
ATCGCTCACGAACTTAATAGCTTATGAATACTGTATTATTACCACCCCGACGGGCTCGTAAACTT
TGTTCTATTTTGCCAAGGGAACCCGCCTGGTAGGGGAAGGTTTAG
Found at i:54865 original size:12 final size:12
Alignment explanation
Indices: 54844--54874 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
54834 CTTTAATCAC
*
54844 CAGTGTCTGTCT
1 CAGTGCCTGTCT
54856 CAGTGCCTGTCT
1 CAGTGCCTGTCT
54868 CAGTGCC
1 CAGTGCC
54875 CAGTCTCGTC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.10, C:0.32, G:0.26, T:0.32
Consensus pattern (12 bp):
CAGTGCCTGTCT
Left flanking sequence: Indices 54344 -- 54843
CTGCCGGCGCTGGCGGCGCGGGCGGGCGACCTGCCTGGCGAGCCGGCGAAGCTGAGCTTGGGGGT
GGTGCTGGTGACGCTGCTCTTGGACGACGAGGAGACGGCGTCGAAGCGGCTGCGACGGGAGTAGT
GGAAGACTAGGTGGCTGGTGGACTATTTGTCTGGTTATCTGGCTGTCTGGTTAATTGGTTTTCTG
GTTAATGGATTTTCTGGTTGGTTTTCTGTTTTGGACAACTAATTTCCTGGATTTTGGTTAACTGG
TTGCCTAGCTGTTCACCTGAGTTACTGGTTTACTGGTTTACTGGTGTCTAGTTATCTGAACTACT
AGTATTCTAATTCTAGTTGTCTGATTATCTGGTTTACTGTTAGCTGGTTTATACCGGATAATTAG
TTACCCAGTTACTGGTTCACTAGTTTCTAGTACTCTGGTCTACTAGTCCTAGTTCACTTGGCTTC
CAGCTCTTCCACCCTCCCTGTTTTTAGCTTACTAGCTTTAATCAC
Right flanking sequence: Indices 54875 -- 55374
CAGTCTCGTCTAGTCTCGTGTCTCCCCGTCTCGCTGTCGGTGCCAGTGAGCCGGCACCCCTTTAT
GAATATGCATCGCTCACGAACTTAATAGCTTATGAATACTGTATTATTACCACCCCGACGGGCTC
GTAAACTTTGTTCTATTTTGCCAAGGGAACCCGCCTGGTAGGGGAAGGTTTAGCCTAGGAAAAGA
AACCAGCGAAGCATGGCTGTGGTTGGCATGAGACGCTTATGTAAAGAGGGTTAATGTGGGTAATG
TTTGAAATTAATTGGTGAAATTGAATGGTAAAACTAAATGGGAAAGAAATCGAAATAGAACGAAA
TGAATACGAAAAAACTAAATGAAAACTAAATGAAAACAAATGAAAACTAAATAAAACTAAACGGA
TGATGGAATAAACAAATACTCAATGGAATAGAAGCACGATGAAACTGGACGTAACAGAACATCTG
ACTTTTCTGATAGTCGTATCAAAATAATTACACTTATTTATTGGC
Found at i:55210 original size:11 final size:11
Alignment explanation
Indices: 55176--55256 Score: 59
Period size: 10 Copynumber: 8.0 Consensus size: 11
55166 AACTAAATGG
*
55176 GAAA-GAAATC
1 GAAATGAAAAC
*
55186 GAAAT-AGAAC
1 GAAATGAAAAC
*
55196 GAAATGAATAC
1 GAAATGAAAAC
55207 G-AA--AAAAC
1 GAAATGAAAAC
*
55215 TAAATGAAAAC
1 GAAATGAAAAC
*
55226 TAAATGAAAAC
1 GAAATGAAAAC
55237 -AAATGAAAAC
1 GAAATGAAAAC
*
55247 TAAAT-AAAAC
1 GAAATGAAAAC
55257 TAAACGGATG
Statistics
Matches: 59, Mismatches: 6, Indels: 12
0.77 0.08 0.16
Matches are distributed among these distances:
8 4 0.07
9 2 0.03
10 29 0.49
11 24 0.41
ACGTcount: A:0.64, C:0.10, G:0.12, T:0.14
Consensus pattern (11 bp):
GAAATGAAAAC
Left flanking sequence: Indices 54676 -- 55175
TAATTCTAGTTGTCTGATTATCTGGTTTACTGTTAGCTGGTTTATACCGGATAATTAGTTACCCA
GTTACTGGTTCACTAGTTTCTAGTACTCTGGTCTACTAGTCCTAGTTCACTTGGCTTCCAGCTCT
TCCACCCTCCCTGTTTTTAGCTTACTAGCTTTAATCACCAGTGTCTGTCTCAGTGCCTGTCTCAG
TGCCCAGTCTCGTCTAGTCTCGTGTCTCCCCGTCTCGCTGTCGGTGCCAGTGAGCCGGCACCCCT
TTATGAATATGCATCGCTCACGAACTTAATAGCTTATGAATACTGTATTATTACCACCCCGACGG
GCTCGTAAACTTTGTTCTATTTTGCCAAGGGAACCCGCCTGGTAGGGGAAGGTTTAGCCTAGGAA
AAGAAACCAGCGAAGCATGGCTGTGGTTGGCATGAGACGCTTATGTAAAGAGGGTTAATGTGGGT
AATGTTTGAAATTAATTGGTGAAATTGAATGGTAAAACTAAATGG
Right flanking sequence: Indices 55257 -- 55756
TAAACGGATGATGGAATAAACAAATACTCAATGGAATAGAAGCACGATGAAACTGGACGTAACAG
AACATCTGACTTTTCTGATAGTCGTATCAAAATAATTACACTTATTTATTGGCCTATTCACAAAG
TACCTGGATTATCACCATTGGAAAAGGAATTGACTGGTCTAGATGCTGGGGGGCCGCAGGCGGCG
CCCCCCAGACCCCCCAACGCTTTTCTGGGTGGATTGTGATGGTTTTTTTACTATTTTTTTGTGGT
ATTAGTTCTTTATTCGTTGTTTATTGGTAACTGATAGGTTATCCCTGGTTCAGTTCGGAAAAAAA
ATAAGATCTGGAATGAAACTGGAGAACGATCGGTGGAACGAACGGTGGAACAACGATGGAACGAA
ACAGCCAGTATACAAACCAGGCGAGATCAACAGCGAACAGAGTTTCGATCACGCTATTTCAACGT
GGGGTTCTTCCGGTAGAAAATACGGGGATCGTGGAATTGTCCTGG
Found at i:55242 original size:10 final size:11
Alignment explanation
Indices: 55210--55260 Score: 88
Period size: 11 Copynumber: 4.8 Consensus size: 11
55200 TGAATACGAA
55210 AAAACTAAATG
1 AAAACTAAATG
55221 AAAACTAAATG
1 AAAACTAAATG
55232 AAAAC-AAATG
1 AAAACTAAATG
55242 AAAACTAAAT-
1 AAAACTAAATG
55252 AAAACTAAA
1 AAAACTAAA
55261 CGGATGATGG
Statistics
Matches: 39, Mismatches: 0, Indels: 3
0.93 0.00 0.07
Matches are distributed among these distances:
10 19 0.49
11 20 0.51
ACGTcount: A:0.69, C:0.10, G:0.06, T:0.16
Consensus pattern (11 bp):
AAAACTAAATG
Left flanking sequence: Indices 54710 -- 55209
AGCTGGTTTATACCGGATAATTAGTTACCCAGTTACTGGTTCACTAGTTTCTAGTACTCTGGTCT
ACTAGTCCTAGTTCACTTGGCTTCCAGCTCTTCCACCCTCCCTGTTTTTAGCTTACTAGCTTTAA
TCACCAGTGTCTGTCTCAGTGCCTGTCTCAGTGCCCAGTCTCGTCTAGTCTCGTGTCTCCCCGTC
TCGCTGTCGGTGCCAGTGAGCCGGCACCCCTTTATGAATATGCATCGCTCACGAACTTAATAGCT
TATGAATACTGTATTATTACCACCCCGACGGGCTCGTAAACTTTGTTCTATTTTGCCAAGGGAAC
CCGCCTGGTAGGGGAAGGTTTAGCCTAGGAAAAGAAACCAGCGAAGCATGGCTGTGGTTGGCATG
AGACGCTTATGTAAAGAGGGTTAATGTGGGTAATGTTTGAAATTAATTGGTGAAATTGAATGGTA
AAACTAAATGGGAAAGAAATCGAAATAGAACGAAATGAATACGAA
Right flanking sequence: Indices 55261 -- 55760
CGGATGATGGAATAAACAAATACTCAATGGAATAGAAGCACGATGAAACTGGACGTAACAGAACA
TCTGACTTTTCTGATAGTCGTATCAAAATAATTACACTTATTTATTGGCCTATTCACAAAGTACC
TGGATTATCACCATTGGAAAAGGAATTGACTGGTCTAGATGCTGGGGGGCCGCAGGCGGCGCCCC
CCAGACCCCCCAACGCTTTTCTGGGTGGATTGTGATGGTTTTTTTACTATTTTTTTGTGGTATTA
GTTCTTTATTCGTTGTTTATTGGTAACTGATAGGTTATCCCTGGTTCAGTTCGGAAAAAAAATAA
GATCTGGAATGAAACTGGAGAACGATCGGTGGAACGAACGGTGGAACAACGATGGAACGAAACAG
CCAGTATACAAACCAGGCGAGATCAACAGCGAACAGAGTTTCGATCACGCTATTTCAACGTGGGG
TTCTTCCGGTAGAAAATACGGGGATCGTGGAATTGTCCTGGAGGC
Found at i:55242 original size:21 final size:21
Alignment explanation
Indices: 55210--55260 Score: 86
Period size: 21 Copynumber: 2.4 Consensus size: 21
55200 TGAATACGAA
55210 AAAACTAAATGAAAACTAAAT
1 AAAACTAAATGAAAACTAAAT
55231 GAAAAC-AAATGAAAACTAAAT
1 -AAAACTAAATGAAAACTAAAT
55252 AAAACTAAA
1 AAAACTAAA
55261 CGGATGATGG
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
20 5 0.18
21 18 0.64
22 5 0.18
ACGTcount: A:0.69, C:0.10, G:0.06, T:0.16
Consensus pattern (21 bp):
AAAACTAAATGAAAACTAAAT
Left flanking sequence: Indices 54710 -- 55209
AGCTGGTTTATACCGGATAATTAGTTACCCAGTTACTGGTTCACTAGTTTCTAGTACTCTGGTCT
ACTAGTCCTAGTTCACTTGGCTTCCAGCTCTTCCACCCTCCCTGTTTTTAGCTTACTAGCTTTAA
TCACCAGTGTCTGTCTCAGTGCCTGTCTCAGTGCCCAGTCTCGTCTAGTCTCGTGTCTCCCCGTC
TCGCTGTCGGTGCCAGTGAGCCGGCACCCCTTTATGAATATGCATCGCTCACGAACTTAATAGCT
TATGAATACTGTATTATTACCACCCCGACGGGCTCGTAAACTTTGTTCTATTTTGCCAAGGGAAC
CCGCCTGGTAGGGGAAGGTTTAGCCTAGGAAAAGAAACCAGCGAAGCATGGCTGTGGTTGGCATG
AGACGCTTATGTAAAGAGGGTTAATGTGGGTAATGTTTGAAATTAATTGGTGAAATTGAATGGTA
AAACTAAATGGGAAAGAAATCGAAATAGAACGAAATGAATACGAA
Right flanking sequence: Indices 55261 -- 55760
CGGATGATGGAATAAACAAATACTCAATGGAATAGAAGCACGATGAAACTGGACGTAACAGAACA
TCTGACTTTTCTGATAGTCGTATCAAAATAATTACACTTATTTATTGGCCTATTCACAAAGTACC
TGGATTATCACCATTGGAAAAGGAATTGACTGGTCTAGATGCTGGGGGGCCGCAGGCGGCGCCCC
CCAGACCCCCCAACGCTTTTCTGGGTGGATTGTGATGGTTTTTTTACTATTTTTTTGTGGTATTA
GTTCTTTATTCGTTGTTTATTGGTAACTGATAGGTTATCCCTGGTTCAGTTCGGAAAAAAAATAA
GATCTGGAATGAAACTGGAGAACGATCGGTGGAACGAACGGTGGAACAACGATGGAACGAAACAG
CCAGTATACAAACCAGGCGAGATCAACAGCGAACAGAGTTTCGATCACGCTATTTCAACGTGGGG
TTCTTCCGGTAGAAAATACGGGGATCGTGGAATTGTCCTGGAGGC
Found at i:55622 original size:12 final size:12
Alignment explanation
Indices: 55605--55646 Score: 59
Period size: 12 Copynumber: 3.6 Consensus size: 12
55595 TGAAACTGGA
*
55605 GAACGATCGGTG
1 GAACGAACGGTG
55617 GAACGAACGGTG
1 GAACGAACGGTG
*
55629 GAAC-AACGATG
1 GAACGAACGGTG
55640 GAACGAA
1 GAACGAA
55647 ACAGCCAGTA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
11 10 0.37
12 17 0.63
ACGTcount: A:0.38, C:0.17, G:0.36, T:0.10
Consensus pattern (12 bp):
GAACGAACGGTG
Left flanking sequence: Indices 55105 -- 55604
CTTATGTAAAGAGGGTTAATGTGGGTAATGTTTGAAATTAATTGGTGAAATTGAATGGTAAAACT
AAATGGGAAAGAAATCGAAATAGAACGAAATGAATACGAAAAAACTAAATGAAAACTAAATGAAA
ACAAATGAAAACTAAATAAAACTAAACGGATGATGGAATAAACAAATACTCAATGGAATAGAAGC
ACGATGAAACTGGACGTAACAGAACATCTGACTTTTCTGATAGTCGTATCAAAATAATTACACTT
ATTTATTGGCCTATTCACAAAGTACCTGGATTATCACCATTGGAAAAGGAATTGACTGGTCTAGA
TGCTGGGGGGCCGCAGGCGGCGCCCCCCAGACCCCCCAACGCTTTTCTGGGTGGATTGTGATGGT
TTTTTTACTATTTTTTTGTGGTATTAGTTCTTTATTCGTTGTTTATTGGTAACTGATAGGTTATC
CCTGGTTCAGTTCGGAAAAAAAATAAGATCTGGAATGAAACTGGA
Right flanking sequence: Indices 55647 -- 56146
ACAGCCAGTATACAAACCAGGCGAGATCAACAGCGAACAGAGTTTCGATCACGCTATTTCAACGT
GGGGTTCTTCCGGTAGAAAATACGGGGATCGTGGAATTGTCCTGGAGGCCCAGGTGTGGATCTTC
GGAATGGTGTAATCGAGGTGGTTGTGGATAAGGGGCTCCTGGCGAATGCATGACTGGATCATGCG
TGTGAATGTGTGGAAGAGTCTATTGGTGATGTGTAGTAATTGAATGCTATGGGTGGTTGGTTGGA
GAACAGTGGGCAATGGTAGGGCCCACAGTCCACTATTACCTTGTAGGACTCGGAAGAACTCCAAT
TTGAAACGTGAAGCCATGGAATACCATTGATACTATGAAATACCCTGGTAGTTACCGTATCTCTG
GGCTTCTCCTCTGAGCCAATCGCCCGGTGGCTTCTCTTTCACACAGCCAATCGCAATGTGTCTTG
GTCGTCGTGGCAATCTCTTTTGGGATCCACCATCTGGGGTCTACC
Found at i:56283 original size:19 final size:19
Alignment explanation
Indices: 56234--56285 Score: 61
Period size: 19 Copynumber: 2.7 Consensus size: 19
56224 GTCCAACATC
*
56234 ATCAGACTAGCCAATTATA
1 ATCAGACTAGCCCATTATA
*
56253 TTC-GAACTAGCCCATTATA
1 ATCAG-ACTAGCCCATTATA
*
56272 ATCAGACGAGCCCA
1 ATCAGACTAGCCCA
56286 AATCTTCAGA
Statistics
Matches: 27, Mismatches: 4, Indels: 4
0.77 0.11 0.11
Matches are distributed among these distances:
18 1 0.04
19 25 0.93
20 1 0.04
ACGTcount: A:0.37, C:0.27, G:0.13, T:0.23
Consensus pattern (19 bp):
ATCAGACTAGCCCATTATA
Left flanking sequence: Indices 55734 -- 56233
CGGGGATCGTGGAATTGTCCTGGAGGCCCAGGTGTGGATCTTCGGAATGGTGTAATCGAGGTGGT
TGTGGATAAGGGGCTCCTGGCGAATGCATGACTGGATCATGCGTGTGAATGTGTGGAAGAGTCTA
TTGGTGATGTGTAGTAATTGAATGCTATGGGTGGTTGGTTGGAGAACAGTGGGCAATGGTAGGGC
CCACAGTCCACTATTACCTTGTAGGACTCGGAAGAACTCCAATTTGAAACGTGAAGCCATGGAAT
ACCATTGATACTATGAAATACCCTGGTAGTTACCGTATCTCTGGGCTTCTCCTCTGAGCCAATCG
CCCGGTGGCTTCTCTTTCACACAGCCAATCGCAATGTGTCTTGGTCGTCGTGGCAATCTCTTTTG
GGATCCACCATCTGGGGTCTACCTGGCAGCGCAGCCACGGTCAAGCCAGCTCACTGGTTTAACAA
CTTAGTTCTTCAGACTAGCCAATGCTCTCGGAGTGGTCCAACATC
Right flanking sequence: Indices 56286 -- 56785
AATCTTCAGACTAGCCATAACTCTTCAGACTAGCCCAAATGTCAGAGTGGTCCATACTGTCAGAC
CAGCCCAATCTTCTCAAACCAGCCAATCTTTTCACACTAGCCCGTTTTTGAGGAACCAGCTAAAC
CCCTCAGACTAGCCCGTTTTCTTAGACCAACCAGTCTCCTCAGAAAACCACCACCAGCCACCACC
AGCCCAACACAACCAATTCCATGCCAATGCCAAAACTCTCTCGTCCATTCTCCCTCCTAAAACGG
CCTCTTCTTCATCGCCTTCTTCGCCACAAACGTCCGGGCCCGCACCATCTCATCGTCGTCCTCGG
AGTCCAGGTCCTGTCTCGCGGCTTTCATCGCAGCCAGCGGCTTCACCGGCTTGCTCTTCACCTTG
GCAGCCCCCTGTTTGCCCGGCTTCGCCACCTGGCCCTTCACCTGGCCCCTCACCTGGCCCACCTG
GCCCCGCACCTGGGCCCGACGGTCGTCTCGGATCTTGTTGGACAA
Found at i:56296 original size:18 final size:18
Alignment explanation
Indices: 56273--56325 Score: 72
Period size: 19 Copynumber: 2.9 Consensus size: 18
56263 CCCATTATAA
*
56273 TCAGACGAGCCCAAATCT
1 TCAGACTAGCCCAAATCT
56291 TCAGACTAG-CCATAACTCT
1 TCAGACTAGCCCA-AA-TCT
56310 TCAGACTAGCCCAAAT
1 TCAGACTAGCCCAAAT
56326 GTCAGAGTGG
Statistics
Matches: 31, Mismatches: 1, Indels: 6
0.82 0.03 0.16
Matches are distributed among these distances:
17 3 0.10
18 11 0.35
19 14 0.45
20 3 0.10
ACGTcount: A:0.34, C:0.32, G:0.13, T:0.21
Consensus pattern (18 bp):
TCAGACTAGCCCAAATCT
Left flanking sequence: Indices 55773 -- 56272
CTTCGGAATGGTGTAATCGAGGTGGTTGTGGATAAGGGGCTCCTGGCGAATGCATGACTGGATCA
TGCGTGTGAATGTGTGGAAGAGTCTATTGGTGATGTGTAGTAATTGAATGCTATGGGTGGTTGGT
TGGAGAACAGTGGGCAATGGTAGGGCCCACAGTCCACTATTACCTTGTAGGACTCGGAAGAACTC
CAATTTGAAACGTGAAGCCATGGAATACCATTGATACTATGAAATACCCTGGTAGTTACCGTATC
TCTGGGCTTCTCCTCTGAGCCAATCGCCCGGTGGCTTCTCTTTCACACAGCCAATCGCAATGTGT
CTTGGTCGTCGTGGCAATCTCTTTTGGGATCCACCATCTGGGGTCTACCTGGCAGCGCAGCCACG
GTCAAGCCAGCTCACTGGTTTAACAACTTAGTTCTTCAGACTAGCCAATGCTCTCGGAGTGGTCC
AACATCATCAGACTAGCCAATTATATTCGAACTAGCCCATTATAA
Right flanking sequence: Indices 56326 -- 56825
GTCAGAGTGGTCCATACTGTCAGACCAGCCCAATCTTCTCAAACCAGCCAATCTTTTCACACTAG
CCCGTTTTTGAGGAACCAGCTAAACCCCTCAGACTAGCCCGTTTTCTTAGACCAACCAGTCTCCT
CAGAAAACCACCACCAGCCACCACCAGCCCAACACAACCAATTCCATGCCAATGCCAAAACTCTC
TCGTCCATTCTCCCTCCTAAAACGGCCTCTTCTTCATCGCCTTCTTCGCCACAAACGTCCGGGCC
CGCACCATCTCATCGTCGTCCTCGGAGTCCAGGTCCTGTCTCGCGGCTTTCATCGCAGCCAGCGG
CTTCACCGGCTTGCTCTTCACCTTGGCAGCCCCCTGTTTGCCCGGCTTCGCCACCTGGCCCTTCA
CCTGGCCCCTCACCTGGCCCACCTGGCCCCGCACCTGGGCCCGACGGTCGTCTCGGATCTTGTTG
GACAACGCTTGCATTGCCAGCGACTTGCGGGCGCCCAGCCCGTTC
Found at i:56341 original size:37 final size:35
Alignment explanation
Indices: 56273--56358 Score: 84
Period size: 37 Copynumber: 2.4 Consensus size: 35
56263 CCCATTATAA
* * *
56273 TCAGACGAGCCCAAATCTTCAGACTAGCCATAACTCT
1 TCAGACCAGCCCAAATCGTCAGACTAGCCAT-ACT-G
* * *
56310 TCAGACTAGCCCAAAT-GTCAGAGTGGTCCATACTG
1 TCAGACCAGCCCAAATCGTCAGACTAG-CCATACTG
56345 TCAGACCAGCCCAA
1 TCAGACCAGCCCAA
56359 TCTTCTCAAA
Statistics
Matches: 42, Mismatches: 6, Indels: 4
0.81 0.12 0.08
Matches are distributed among these distances:
35 13 0.31
36 10 0.24
37 19 0.45
ACGTcount: A:0.31, C:0.31, G:0.17, T:0.20
Consensus pattern (35 bp):
TCAGACCAGCCCAAATCGTCAGACTAGCCATACTG
Left flanking sequence: Indices 55773 -- 56272
CTTCGGAATGGTGTAATCGAGGTGGTTGTGGATAAGGGGCTCCTGGCGAATGCATGACTGGATCA
TGCGTGTGAATGTGTGGAAGAGTCTATTGGTGATGTGTAGTAATTGAATGCTATGGGTGGTTGGT
TGGAGAACAGTGGGCAATGGTAGGGCCCACAGTCCACTATTACCTTGTAGGACTCGGAAGAACTC
CAATTTGAAACGTGAAGCCATGGAATACCATTGATACTATGAAATACCCTGGTAGTTACCGTATC
TCTGGGCTTCTCCTCTGAGCCAATCGCCCGGTGGCTTCTCTTTCACACAGCCAATCGCAATGTGT
CTTGGTCGTCGTGGCAATCTCTTTTGGGATCCACCATCTGGGGTCTACCTGGCAGCGCAGCCACG
GTCAAGCCAGCTCACTGGTTTAACAACTTAGTTCTTCAGACTAGCCAATGCTCTCGGAGTGGTCC
AACATCATCAGACTAGCCAATTATATTCGAACTAGCCCATTATAA
Right flanking sequence: Indices 56359 -- 56858
TCTTCTCAAACCAGCCAATCTTTTCACACTAGCCCGTTTTTGAGGAACCAGCTAAACCCCTCAGA
CTAGCCCGTTTTCTTAGACCAACCAGTCTCCTCAGAAAACCACCACCAGCCACCACCAGCCCAAC
ACAACCAATTCCATGCCAATGCCAAAACTCTCTCGTCCATTCTCCCTCCTAAAACGGCCTCTTCT
TCATCGCCTTCTTCGCCACAAACGTCCGGGCCCGCACCATCTCATCGTCGTCCTCGGAGTCCAGG
TCCTGTCTCGCGGCTTTCATCGCAGCCAGCGGCTTCACCGGCTTGCTCTTCACCTTGGCAGCCCC
CTGTTTGCCCGGCTTCGCCACCTGGCCCTTCACCTGGCCCCTCACCTGGCCCACCTGGCCCCGCA
CCTGGGCCCGACGGTCGTCTCGGATCTTGTTGGACAACGCTTGCATTGCCAGCGACTTGCGGGCG
CCCAGCCCGTTCAACGGCGCCAGCGGCGTCTTCGTGGCTCCCGTA
Found at i:56719 original size:12 final size:12
Alignment explanation
Indices: 56702--56753 Score: 65
Period size: 12 Copynumber: 4.6 Consensus size: 12
56692 CCGGCTTCGC
*
56702 CACCTGGCCCTT
1 CACCTGGCCCCT
56714 CACCTGGCCCCT
1 CACCTGGCCCCT
56726 CACCTGG--CC-
1 CACCTGGCCCCT
*
56735 CACCTGGCCCCG
1 CACCTGGCCCCT
56747 CACCTGG
1 CACCTGG
56754 GCCCGACGGT
Statistics
Matches: 36, Mismatches: 1, Indels: 6
0.84 0.02 0.14
Matches are distributed among these distances:
9 7 0.19
10 2 0.06
11 2 0.06
12 25 0.69
ACGTcount: A:0.10, C:0.54, G:0.21, T:0.15
Consensus pattern (12 bp):
CACCTGGCCCCT
Left flanking sequence: Indices 56202 -- 56701
ACTAGCCAATGCTCTCGGAGTGGTCCAACATCATCAGACTAGCCAATTATATTCGAACTAGCCCA
TTATAATCAGACGAGCCCAAATCTTCAGACTAGCCATAACTCTTCAGACTAGCCCAAATGTCAGA
GTGGTCCATACTGTCAGACCAGCCCAATCTTCTCAAACCAGCCAATCTTTTCACACTAGCCCGTT
TTTGAGGAACCAGCTAAACCCCTCAGACTAGCCCGTTTTCTTAGACCAACCAGTCTCCTCAGAAA
ACCACCACCAGCCACCACCAGCCCAACACAACCAATTCCATGCCAATGCCAAAACTCTCTCGTCC
ATTCTCCCTCCTAAAACGGCCTCTTCTTCATCGCCTTCTTCGCCACAAACGTCCGGGCCCGCACC
ATCTCATCGTCGTCCTCGGAGTCCAGGTCCTGTCTCGCGGCTTTCATCGCAGCCAGCGGCTTCAC
CGGCTTGCTCTTCACCTTGGCAGCCCCCTGTTTGCCCGGCTTCGC
Right flanking sequence: Indices 56754 -- 57253
GCCCGACGGTCGTCTCGGATCTTGTTGGACAACGCTTGCATTGCCAGCGACTTGCGGGCGCCCAG
CCCGTTCAACGGCGCCAGCGGCGTCTTCGTGGCTCCCGTAAAGAAGTCCCCCACCGTTTTGCCCA
GCTTGACCACGCTCAACTCGCTGAGCGATGCCCCGTTGGCCACGATGGGGAGGCTGAAAAACTCC
TGCTGGCCGCCAGACGCCGCAGCTGGCGCCAGGTTCGGGTCCTCGCCGAGCCACTGGGCCGCCAA
GCTCGTGTTCTGGGCCATCGCTAGCTGGAACCGGGCCTGGAGAGCCTCCTTGTGCTTGATCTCTT
GCCTCCGGGACATGTCGTGGTGGTGGTGCGCGGGCTCGCAATTTCGATGCCTCGCACCGGTGCTG
AGGTGTGTGGGCTGTGTGCAGGCACGGTGCAGGCACTGTGCTGTAGGGGTGCCCCCAGGGTGCCC
AAGCACCGGCCAGCGGGCGGGTGGCGGCAGTTACGGAACGCTGAG
Found at i:56740 original size:21 final size:21
Alignment explanation
Indices: 56714--56753 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
56704 CCTGGCCCTT
*
56714 CACCTGGCCCCTCACCTGGCC
1 CACCTGGCCCCGCACCTGGCC
56735 CACCTGGCCCCGCACCTGG
1 CACCTGGCCCCGCACCTGG
56754 GCCCGACGGT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.10, C:0.55, G:0.23, T:0.12
Consensus pattern (21 bp):
CACCTGGCCCCGCACCTGGCC
Left flanking sequence: Indices 56214 -- 56713
TCTCGGAGTGGTCCAACATCATCAGACTAGCCAATTATATTCGAACTAGCCCATTATAATCAGAC
GAGCCCAAATCTTCAGACTAGCCATAACTCTTCAGACTAGCCCAAATGTCAGAGTGGTCCATACT
GTCAGACCAGCCCAATCTTCTCAAACCAGCCAATCTTTTCACACTAGCCCGTTTTTGAGGAACCA
GCTAAACCCCTCAGACTAGCCCGTTTTCTTAGACCAACCAGTCTCCTCAGAAAACCACCACCAGC
CACCACCAGCCCAACACAACCAATTCCATGCCAATGCCAAAACTCTCTCGTCCATTCTCCCTCCT
AAAACGGCCTCTTCTTCATCGCCTTCTTCGCCACAAACGTCCGGGCCCGCACCATCTCATCGTCG
TCCTCGGAGTCCAGGTCCTGTCTCGCGGCTTTCATCGCAGCCAGCGGCTTCACCGGCTTGCTCTT
CACCTTGGCAGCCCCCTGTTTGCCCGGCTTCGCCACCTGGCCCTT
Right flanking sequence: Indices 56754 -- 57253
GCCCGACGGTCGTCTCGGATCTTGTTGGACAACGCTTGCATTGCCAGCGACTTGCGGGCGCCCAG
CCCGTTCAACGGCGCCAGCGGCGTCTTCGTGGCTCCCGTAAAGAAGTCCCCCACCGTTTTGCCCA
GCTTGACCACGCTCAACTCGCTGAGCGATGCCCCGTTGGCCACGATGGGGAGGCTGAAAAACTCC
TGCTGGCCGCCAGACGCCGCAGCTGGCGCCAGGTTCGGGTCCTCGCCGAGCCACTGGGCCGCCAA
GCTCGTGTTCTGGGCCATCGCTAGCTGGAACCGGGCCTGGAGAGCCTCCTTGTGCTTGATCTCTT
GCCTCCGGGACATGTCGTGGTGGTGGTGCGCGGGCTCGCAATTTCGATGCCTCGCACCGGTGCTG
AGGTGTGTGGGCTGTGTGCAGGCACGGTGCAGGCACTGTGCTGTAGGGGTGCCCCCAGGGTGCCC
AAGCACCGGCCAGCGGGCGGGTGGCGGCAGTTACGGAACGCTGAG
Found at i:57731 original size:27 final size:28
Alignment explanation
Indices: 57677--57737 Score: 106
Period size: 27 Copynumber: 2.2 Consensus size: 28
57667 TTGGCGGTGC
57677 CGGTGCGTGCCTGTGCCGGTGCCGGAGA
1 CGGTGCGTGCCTGTGCCGGTGCCGGAGA
*
57705 CGGTGCGTGCTTGTG-CGGTGCCGGAGA
1 CGGTGCGTGCCTGTGCCGGTGCCGGAGA
57732 CGGTGC
1 CGGTGC
57738 ACTGCCTGGA
Statistics
Matches: 32, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
27 18 0.56
28 14 0.44
ACGTcount: A:0.07, C:0.26, G:0.48, T:0.20
Consensus pattern (28 bp):
CGGTGCGTGCCTGTGCCGGTGCCGGAGA
Left flanking sequence: Indices 57177 -- 57676
CACTGTGCTGTAGGGGTGCCCCCAGGGTGCCCAAGCACCGGCCAGCGGGCGGGTGGCGGCAGTTA
CGGAACGCTGAGCGGGCTGCCTCGAGGCTGGCGGCCCGTGCCTGGGCCCGTCGCAAGCGCATTGT
CCGGAGCCTCTGCGATTGTCCCGAAACCCACCTTCTTCTCTCGCCAACAATAGCTGGCGATAATG
GCGTATATACGACAATGGCAAGCGATCCGCCGTCTGCGGTCCGGGCCCGCACCCGCACACGTCAC
CGAGACAGGCACAGCTCCCGCCAGTGTGCCCGCACCGGTGCACCGGTGACGTGATTAAGTTTACG
CGAGCTGGGACAACTATACCCGGGCCGCAGTGGCAGCCGACAAGAAGCCTGGAACCGCCTTGGAC
GCGGGGTGTCCACGCACTGCGGACTCTGGTGGCGGGCCCTGGTGGCGGAAAGATCCCGTGTCGGT
GGCCGGGCGCCCGGGCTCGGTGCCATCGCAGCTGGTTGGCGGTGC
Right flanking sequence: Indices 57738 -- 58237
ACTGCCTGGACGGTGCACTGCCTGAACGGTGCACTGCCTGAACGGTGCACTGCCTGAACCGGTGC
ACTGCCTGAACCTGTGCGCTTACCCCTGGTCGTAGCTGAGCCAATGGCCGCCACGGCCCAGCTTC
GGTGGCTCAATGGCCACACTTACACCGTAAACGCCAGCAAAACCTACAATTTACCACACTTTACC
GTAAATGCCAGCCAGTCTTCACACTTTACCGTAAACGCCAGCCTCTTCACATTACCGTAAACGCC
AGCCTCTTCATACTTACCGTAAACGCCAGTCAACACACCCCGTTCTATCAGACACCGTACCTAAT
TACCGTTGCCTGTTTAGGCTCCCCAAACTCCGATTCGTACATGTGTCGTCCCAGGCACCCCCTGG
GCGGGGCGCCGTCTGGCGTGGGCACACGCAAAATACCCAGCGTCCGCATGGCAACCGGTTGTTCA
CTTGCCTCGTCTACGCCCGGGCCCCTCGTGGTGCCCGTCACCGGC
Found at i:57819 original size:17 final size:16
Alignment explanation
Indices: 57731--57813 Score: 148
Period size: 16 Copynumber: 5.1 Consensus size: 16
57721 GGTGCCGGAG
*
57731 ACGGTGCACTGCCTGG
1 ACGGTGCACTGCCTGA
57747 ACGGTGCACTGCCTGA
1 ACGGTGCACTGCCTGA
57763 ACGGTGCACTGCCTGA
1 ACGGTGCACTGCCTGA
57779 ACGGTGCACTGCCTGA
1 ACGGTGCACTGCCTGA
57795 ACCGGTGCACTGCCTGA
1 A-CGGTGCACTGCCTGA
57812 AC
1 AC
57814 CTGTGCGCTT
Statistics
Matches: 65, Mismatches: 1, Indels: 2
0.96 0.01 0.03
Matches are distributed among these distances:
16 49 0.75
17 16 0.25
ACGTcount: A:0.18, C:0.33, G:0.31, T:0.18
Consensus pattern (16 bp):
ACGGTGCACTGCCTGA
Left flanking sequence: Indices 57231 -- 57730
GGCGGCAGTTACGGAACGCTGAGCGGGCTGCCTCGAGGCTGGCGGCCCGTGCCTGGGCCCGTCGC
AAGCGCATTGTCCGGAGCCTCTGCGATTGTCCCGAAACCCACCTTCTTCTCTCGCCAACAATAGC
TGGCGATAATGGCGTATATACGACAATGGCAAGCGATCCGCCGTCTGCGGTCCGGGCCCGCACCC
GCACACGTCACCGAGACAGGCACAGCTCCCGCCAGTGTGCCCGCACCGGTGCACCGGTGACGTGA
TTAAGTTTACGCGAGCTGGGACAACTATACCCGGGCCGCAGTGGCAGCCGACAAGAAGCCTGGAA
CCGCCTTGGACGCGGGGTGTCCACGCACTGCGGACTCTGGTGGCGGGCCCTGGTGGCGGAAAGAT
CCCGTGTCGGTGGCCGGGCGCCCGGGCTCGGTGCCATCGCAGCTGGTTGGCGGTGCCGGTGCGTG
CCTGTGCCGGTGCCGGAGACGGTGCGTGCTTGTGCGGTGCCGGAG
Right flanking sequence: Indices 57814 -- 58313
CTGTGCGCTTACCCCTGGTCGTAGCTGAGCCAATGGCCGCCACGGCCCAGCTTCGGTGGCTCAAT
GGCCACACTTACACCGTAAACGCCAGCAAAACCTACAATTTACCACACTTTACCGTAAATGCCAG
CCAGTCTTCACACTTTACCGTAAACGCCAGCCTCTTCACATTACCGTAAACGCCAGCCTCTTCAT
ACTTACCGTAAACGCCAGTCAACACACCCCGTTCTATCAGACACCGTACCTAATTACCGTTGCCT
GTTTAGGCTCCCCAAACTCCGATTCGTACATGTGTCGTCCCAGGCACCCCCTGGGCGGGGCGCCG
TCTGGCGTGGGCACACGCAAAATACCCAGCGTCCGCATGGCAACCGGTTGTTCACTTGCCTCGTC
TACGCCCGGGCCCCTCGTGGTGCCCGTCACCGGCGTTCGCTCGGGGTCTCCCCTCTCTATGCACC
CCGGATTTTCCGCATGCACTGCGCGAGAGGGGAACGAGTCTATTG
Found at i:57987 original size:26 final size:27
Alignment explanation
Indices: 57922--58026 Score: 149
Period size: 26 Copynumber: 3.8 Consensus size: 27
57912 TACAATTTAC
*
57922 CACACTTTACCGTAAATGCCAGCCAGTCTT
1 CACAC-TTACCGTAAACGCCAGCC--TCTT
57952 CACACTTTACCGTAAACGCCAGCCTCTT
1 CACAC-TTACCGTAAACGCCAGCCTCTT
57980 CACA-TTACCGTAAACGCCAGCCTCTT
1 CACACTTACCGTAAACGCCAGCCTCTT
*
58006 CATACTTACCGTAAACGCCAG
1 CACACTTACCGTAAACGCCAG
58027 TCAACACACC
Statistics
Matches: 72, Mismatches: 2, Indels: 5
0.91 0.03 0.06
Matches are distributed among these distances:
26 25 0.35
27 16 0.22
28 8 0.11
30 23 0.32
ACGTcount: A:0.28, C:0.36, G:0.12, T:0.24
Consensus pattern (27 bp):
CACACTTACCGTAAACGCCAGCCTCTT
Left flanking sequence: Indices 57422 -- 57921
ACCCGCACACGTCACCGAGACAGGCACAGCTCCCGCCAGTGTGCCCGCACCGGTGCACCGGTGAC
GTGATTAAGTTTACGCGAGCTGGGACAACTATACCCGGGCCGCAGTGGCAGCCGACAAGAAGCCT
GGAACCGCCTTGGACGCGGGGTGTCCACGCACTGCGGACTCTGGTGGCGGGCCCTGGTGGCGGAA
AGATCCCGTGTCGGTGGCCGGGCGCCCGGGCTCGGTGCCATCGCAGCTGGTTGGCGGTGCCGGTG
CGTGCCTGTGCCGGTGCCGGAGACGGTGCGTGCTTGTGCGGTGCCGGAGACGGTGCACTGCCTGG
ACGGTGCACTGCCTGAACGGTGCACTGCCTGAACGGTGCACTGCCTGAACCGGTGCACTGCCTGA
ACCTGTGCGCTTACCCCTGGTCGTAGCTGAGCCAATGGCCGCCACGGCCCAGCTTCGGTGGCTCA
ATGGCCACACTTACACCGTAAACGCCAGCAAAACCTACAATTTAC
Right flanking sequence: Indices 58027 -- 58526
TCAACACACCCCGTTCTATCAGACACCGTACCTAATTACCGTTGCCTGTTTAGGCTCCCCAAACT
CCGATTCGTACATGTGTCGTCCCAGGCACCCCCTGGGCGGGGCGCCGTCTGGCGTGGGCACACGC
AAAATACCCAGCGTCCGCATGGCAACCGGTTGTTCACTTGCCTCGTCTACGCCCGGGCCCCTCGT
GGTGCCCGTCACCGGCGTTCGCTCGGGGTCTCCCCTCTCTATGCACCCCGGATTTTCCGCATGCA
CTGCGCGAGAGGGGAACGAGTCTATTGTCCGACGTCGACCCCCAGGATCTAATTGTGCCTGTGCT
ATTCTTATCTTGAAGTGTCTTGTGTCGACGTCTTGTTGAGTCTACACGTGGTCTGTTACTGTTCC
GGAACAATTGCTATTGCTGATAGGCCTCGGATTAACCTGTGATAGCCTGTGATACCTGTGATCCC
TCCTCGAACTACTTTCCTGGTGCCTCCCTGAGTTACTCCTCCGTC
Found at i:58576 original size:23 final size:23
Alignment explanation
Indices: 58527--58610 Score: 114
Period size: 23 Copynumber: 3.6 Consensus size: 23
58517 CTCCTCCGTC
* *
58527 CCTTGAGTTACTCCTTCGATTACCT
1 CCTTGAGTCACT-C-TCGTTTACCT
*
58552 CCGTGAGTCACTCTCGTTTACCT
1 CCTTGAGTCACTCTCGTTTACCT
58575 CCTTGAGTCACTCTCGTTTACCT
1 CCTTGAGTCACTCTCGTTTACCT
*
58598 CCTTGAGTTACTC
1 CCTTGAGTCACTC
58611 CTCCGTGTGC
Statistics
Matches: 54, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
23 43 0.80
24 1 0.02
25 10 0.19
ACGTcount: A:0.14, C:0.33, G:0.14, T:0.38
Consensus pattern (23 bp):
CCTTGAGTCACTCTCGTTTACCT
Left flanking sequence: Indices 58027 -- 58526
TCAACACACCCCGTTCTATCAGACACCGTACCTAATTACCGTTGCCTGTTTAGGCTCCCCAAACT
CCGATTCGTACATGTGTCGTCCCAGGCACCCCCTGGGCGGGGCGCCGTCTGGCGTGGGCACACGC
AAAATACCCAGCGTCCGCATGGCAACCGGTTGTTCACTTGCCTCGTCTACGCCCGGGCCCCTCGT
GGTGCCCGTCACCGGCGTTCGCTCGGGGTCTCCCCTCTCTATGCACCCCGGATTTTCCGCATGCA
CTGCGCGAGAGGGGAACGAGTCTATTGTCCGACGTCGACCCCCAGGATCTAATTGTGCCTGTGCT
ATTCTTATCTTGAAGTGTCTTGTGTCGACGTCTTGTTGAGTCTACACGTGGTCTGTTACTGTTCC
GGAACAATTGCTATTGCTGATAGGCCTCGGATTAACCTGTGATAGCCTGTGATACCTGTGATCCC
TCCTCGAACTACTTTCCTGGTGCCTCCCTGAGTTACTCCTCCGTC
Right flanking sequence: Indices 58611 -- 59110
CTCCGTGTGCCTCCCTTGAGTTACGCCTCCCCGTGCCTCCCTTCAACTACCCTCCGTGTGTCTTG
ACACCATGCGTGCTATCATCATTGACCACCCCAGCCCTATGGCCGCCTACGTCCTTGGCTACTGG
CTCGGCCACCACTTGCCCCATTTCCAGATCGTGCTCATCGACAACGGCACCCCCGCGTCCATGCC
GTGGGTGGTGAGCCCCACCACCATGCCCAAGTTTTCGGGGGCGGCCCCGTTCGTCTCGCTGCTCC
CGGTGATTGCCATCCAGCTGGTGCAACACGAGAGCCTGGCCGACGCGGCCGTGGCGGGCAAGGAC
CTCAACTGCGACCTCCCCGTGGCCGTCCAGCTCCACCAGCTCGTGGTGCGCGTGGGCACCTCCCA
GCACATGCACATGTACCACCCCCAGGTGGTGATCCACCACTTGCGGCTGTTGTTGCTGAGCAAGT
CGCTCCCCAACGTGCTGGTGTTGCTGACGAAGCAGCGGGCGCATC
Found at i:58628 original size:26 final size:25
Alignment explanation
Indices: 58504--58640 Score: 105
Period size: 23 Copynumber: 5.8 Consensus size: 25
58494 TTTCCTGGTG
*
58504 CCTCCCTGAGTTACTCCTCC--GT-
1 CCTCCTTGAGTTACTCCTCCGTGTA
*
58526 -C-CCTTGAGTTACTCCTTCGAT-TA
1 CCTCCTTGAGTTACTCCTCCG-TGTA
* * *
58549 CCTCCGTGAGTCACT-CT-CGTTTA
1 CCTCCTTGAGTTACTCCTCCGTGTA
* *
58572 CCTCCTTGAGTCACT-CT-CGTTTA
1 CCTCCTTGAGTTACTCCTCCGTGTA
*
58595 CCTCCTTGAGTTACTCCTCCGTGTG
1 CCTCCTTGAGTTACTCCTCCGTGTA
*
58620 CCTCCCTTGAGTTACGCCTCC
1 CCT-CCTTGAGTTACTCCTCC
58641 CCGTGCCTCC
Statistics
Matches: 96, Mismatches: 9, Indels: 16
0.79 0.07 0.13
Matches are distributed among these distances:
20 15 0.16
21 1 0.01
22 2 0.02
23 40 0.42
24 5 0.05
25 17 0.18
26 16 0.17
ACGTcount: A:0.12, C:0.38, G:0.15, T:0.35
Consensus pattern (25 bp):
CCTCCTTGAGTTACTCCTCCGTGTA
Left flanking sequence: Indices 58004 -- 58503
TTCATACTTACCGTAAACGCCAGTCAACACACCCCGTTCTATCAGACACCGTACCTAATTACCGT
TGCCTGTTTAGGCTCCCCAAACTCCGATTCGTACATGTGTCGTCCCAGGCACCCCCTGGGCGGGG
CGCCGTCTGGCGTGGGCACACGCAAAATACCCAGCGTCCGCATGGCAACCGGTTGTTCACTTGCC
TCGTCTACGCCCGGGCCCCTCGTGGTGCCCGTCACCGGCGTTCGCTCGGGGTCTCCCCTCTCTAT
GCACCCCGGATTTTCCGCATGCACTGCGCGAGAGGGGAACGAGTCTATTGTCCGACGTCGACCCC
CAGGATCTAATTGTGCCTGTGCTATTCTTATCTTGAAGTGTCTTGTGTCGACGTCTTGTTGAGTC
TACACGTGGTCTGTTACTGTTCCGGAACAATTGCTATTGCTGATAGGCCTCGGATTAACCTGTGA
TAGCCTGTGATACCTGTGATCCCTCCTCGAACTACTTTCCTGGTG
Right flanking sequence: Indices 58641 -- 59140
CCGTGCCTCCCTTCAACTACCCTCCGTGTGTCTTGACACCATGCGTGCTATCATCATTGACCACC
CCAGCCCTATGGCCGCCTACGTCCTTGGCTACTGGCTCGGCCACCACTTGCCCCATTTCCAGATC
GTGCTCATCGACAACGGCACCCCCGCGTCCATGCCGTGGGTGGTGAGCCCCACCACCATGCCCAA
GTTTTCGGGGGCGGCCCCGTTCGTCTCGCTGCTCCCGGTGATTGCCATCCAGCTGGTGCAACACG
AGAGCCTGGCCGACGCGGCCGTGGCGGGCAAGGACCTCAACTGCGACCTCCCCGTGGCCGTCCAG
CTCCACCAGCTCGTGGTGCGCGTGGGCACCTCCCAGCACATGCACATGTACCACCCCCAGGTGGT
GATCCACCACTTGCGGCTGTTGTTGCTGAGCAAGTCGCTCCCCAACGTGCTGGTGTTGCTGACGA
AGCAGCGGGCGCATCTCCAGGCGGAGATCCCGGGCCTGCTGTTGA
Found at i:58646 original size:26 final size:26
Alignment explanation
Indices: 58598--58653 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
58588 TCGTTTACCT
* **
58598 CCTTGAGTTACTCCTCCGTGTGCCTC
1 CCTTGAGTTACGCCTCCCCGTGCCTC
58624 CCTTGAGTTACGCCTCCCCGTGCCTC
1 CCTTGAGTTACGCCTCCCCGTGCCTC
58650 CCTT
1 CCTT
58654 CAACTACCCT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.07, C:0.43, G:0.18, T:0.32
Consensus pattern (26 bp):
CCTTGAGTTACGCCTCCCCGTGCCTC
Left flanking sequence: Indices 58098 -- 58597
CGTACATGTGTCGTCCCAGGCACCCCCTGGGCGGGGCGCCGTCTGGCGTGGGCACACGCAAAATA
CCCAGCGTCCGCATGGCAACCGGTTGTTCACTTGCCTCGTCTACGCCCGGGCCCCTCGTGGTGCC
CGTCACCGGCGTTCGCTCGGGGTCTCCCCTCTCTATGCACCCCGGATTTTCCGCATGCACTGCGC
GAGAGGGGAACGAGTCTATTGTCCGACGTCGACCCCCAGGATCTAATTGTGCCTGTGCTATTCTT
ATCTTGAAGTGTCTTGTGTCGACGTCTTGTTGAGTCTACACGTGGTCTGTTACTGTTCCGGAACA
ATTGCTATTGCTGATAGGCCTCGGATTAACCTGTGATAGCCTGTGATACCTGTGATCCCTCCTCG
AACTACTTTCCTGGTGCCTCCCTGAGTTACTCCTCCGTCCCTTGAGTTACTCCTTCGATTACCTC
CGTGAGTCACTCTCGTTTACCTCCTTGAGTCACTCTCGTTTACCT
Right flanking sequence: Indices 58654 -- 59153
CAACTACCCTCCGTGTGTCTTGACACCATGCGTGCTATCATCATTGACCACCCCAGCCCTATGGC
CGCCTACGTCCTTGGCTACTGGCTCGGCCACCACTTGCCCCATTTCCAGATCGTGCTCATCGACA
ACGGCACCCCCGCGTCCATGCCGTGGGTGGTGAGCCCCACCACCATGCCCAAGTTTTCGGGGGCG
GCCCCGTTCGTCTCGCTGCTCCCGGTGATTGCCATCCAGCTGGTGCAACACGAGAGCCTGGCCGA
CGCGGCCGTGGCGGGCAAGGACCTCAACTGCGACCTCCCCGTGGCCGTCCAGCTCCACCAGCTCG
TGGTGCGCGTGGGCACCTCCCAGCACATGCACATGTACCACCCCCAGGTGGTGATCCACCACTTG
CGGCTGTTGTTGCTGAGCAAGTCGCTCCCCAACGTGCTGGTGTTGCTGACGAAGCAGCGGGCGCA
TCTCCAGGCGGAGATCCCGGGCCTGCTGTTGATCCAGTTCATCCC
Found at i:59483 original size:25 final size:24
Alignment explanation
Indices: 59449--59502 Score: 63
Period size: 25 Copynumber: 2.2 Consensus size: 24
59439 CTAGAGACGG
*
59449 GTGGTAGCTTAAAATTGTCTATGT
1 GTGGTAGCTTAAAATCGTCTATGT
* * *
59473 CGTGGTTGCTTAGAGTCGTCTATGT
1 -GTGGTAGCTTAAAATCGTCTATGT
59498 GTGGT
1 GTGGT
59503 GAGTTAGTCA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
24 5 0.20
25 20 0.80
ACGTcount: A:0.17, C:0.11, G:0.31, T:0.41
Consensus pattern (24 bp):
GTGGTAGCTTAAAATCGTCTATGT
Left flanking sequence: Indices 58949 -- 59448
TCCCCGTGGCCGTCCAGCTCCACCAGCTCGTGGTGCGCGTGGGCACCTCCCAGCACATGCACATG
TACCACCCCCAGGTGGTGATCCACCACTTGCGGCTGTTGTTGCTGAGCAAGTCGCTCCCCAACGT
GCTGGTGTTGCTGACGAAGCAGCGGGCGCATCTCCAGGCGGAGATCCCGGGCCTGCTGTTGATCC
AGTTCATCCCCACCCTGAAGCTCGAGCTGGTGGAGGCCAACCGCACCGGCGGCAACGTGATGGTG
GTGTGCCACAACCACCCGGCGCTCCCGCTGACGGCGTACTTGGCGCTGACCGAGGCGGCTGGGTT
CCGGCTTGCCGAGGTGACGAACGACCTGGTCAAGTTTGAGGTTGAGGCGAACGACTTGGACTTGG
GCCAGCTCATTGCGCTTGCGAACGCCACGCTGAACATTTTGAGGCTTTCCGTGTCGAGTCTTTAG
AGAAGAAGGGCTAAGAGATGGCTTAGAGACAGTAGCTAGAGACGG
Right flanking sequence: Indices 59503 -- 60002
GAGTTAGTCAATAAAAGTGAGCTTAGAGTAGTGGGGGTTAGTGTAGTACTTTTGGGTCTGGCTGT
TAGTTGTAAGAATGTTTACGTTGTGATCACGAGTAAGATCAACGTGAATCACTAGTTAGATCAAC
GTGGATCACGAGTAAGATCGTGTTCAAAGGTTAGATCATTGAAGCTACTGATGTGTTCAAAGGTA
CTCTATGGGATCTAGTATCATCATGGGTTAGTATCACCAGTTTCTCTCTGAATCATCAAATATAT
CCACTATCTTCCAAAGCGAGTGGTTTTCCAAATCATCGGATCTGTGTTGATTCTCGTGCTGACAT
CATGTCCAATATCAACTCTGTCCTTTCCCAAATCCACTCTACGGTAACAACTCAAACCCAATTGT
ACACTATGGTAACAACTCAATCCTACGATCTGTTACCATCCTCCCATATCTATTTCCATCCTCCC
ACACCCCTTACCCTCCACACCCACCACCCCCCTACTTCCTCCCTT
Found at i:59618 original size:22 final size:22
Alignment explanation
Indices: 59593--59651 Score: 91
Period size: 22 Copynumber: 2.7 Consensus size: 22
59583 TTACGTTGTG
59593 ATCACGAGTAAGATCAACGTGA
1 ATCACGAGTAAGATCAACGTGA
* * *
59615 ATCACTAGTTAGATCAACGTGG
1 ATCACGAGTAAGATCAACGTGA
59637 ATCACGAGTAAGATC
1 ATCACGAGTAAGATC
59652 GTGTTCAAAG
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 32 1.00
ACGTcount: A:0.37, C:0.19, G:0.22, T:0.22
Consensus pattern (22 bp):
ATCACGAGTAAGATCAACGTGA
Left flanking sequence: Indices 59093 -- 59592
CGAAGCAGCGGGCGCATCTCCAGGCGGAGATCCCGGGCCTGCTGTTGATCCAGTTCATCCCCACC
CTGAAGCTCGAGCTGGTGGAGGCCAACCGCACCGGCGGCAACGTGATGGTGGTGTGCCACAACCA
CCCGGCGCTCCCGCTGACGGCGTACTTGGCGCTGACCGAGGCGGCTGGGTTCCGGCTTGCCGAGG
TGACGAACGACCTGGTCAAGTTTGAGGTTGAGGCGAACGACTTGGACTTGGGCCAGCTCATTGCG
CTTGCGAACGCCACGCTGAACATTTTGAGGCTTTCCGTGTCGAGTCTTTAGAGAAGAAGGGCTAA
GAGATGGCTTAGAGACAGTAGCTAGAGACGGGTGGTAGCTTAAAATTGTCTATGTCGTGGTTGCT
TAGAGTCGTCTATGTGTGGTGAGTTAGTCAATAAAAGTGAGCTTAGAGTAGTGGGGGTTAGTGTA
GTACTTTTGGGTCTGGCTGTTAGTTGTAAGAATGTTTACGTTGTG
Right flanking sequence: Indices 59652 -- 60151
GTGTTCAAAGGTTAGATCATTGAAGCTACTGATGTGTTCAAAGGTACTCTATGGGATCTAGTATC
ATCATGGGTTAGTATCACCAGTTTCTCTCTGAATCATCAAATATATCCACTATCTTCCAAAGCGA
GTGGTTTTCCAAATCATCGGATCTGTGTTGATTCTCGTGCTGACATCATGTCCAATATCAACTCT
GTCCTTTCCCAAATCCACTCTACGGTAACAACTCAAACCCAATTGTACACTATGGTAACAACTCA
ATCCTACGATCTGTTACCATCCTCCCATATCTATTTCCATCCTCCCACACCCCTTACCCTCCACA
CCCACCACCCCCCTACTTCCTCCCTTCCCAACTAAAATACATTATAATACAGATGCGATTAAATA
GGCAACGGGTAGATCCCCGCCAACCGGTCAATAGTAGGCGCAATCACCGGGTGGCTCAACACTGG
CCCGATCACAGGCACCAGCCGCAAGAACTGGACAATGGTGCCGAA
Found at i:59888 original size:30 final size:30
Alignment explanation
Indices: 59854--59912 Score: 73
Period size: 30 Copynumber: 2.0 Consensus size: 30
59844 TCTGTCCTTT
*
59854 CCCAAATCCACTCTACGGTAACAACTCAAA
1 CCCAAATCCACACTACGGTAACAACTCAAA
* ** *
59884 CCCAATTGTACACTATGGTAACAACTCAA
1 CCCAAATCCACACTACGGTAACAACTCAA
59913 TCCTACGATC
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.39, C:0.32, G:0.08, T:0.20
Consensus pattern (30 bp):
CCCAAATCCACACTACGGTAACAACTCAAA
Left flanking sequence: Indices 59354 -- 59853
TTGCGAACGCCACGCTGAACATTTTGAGGCTTTCCGTGTCGAGTCTTTAGAGAAGAAGGGCTAAG
AGATGGCTTAGAGACAGTAGCTAGAGACGGGTGGTAGCTTAAAATTGTCTATGTCGTGGTTGCTT
AGAGTCGTCTATGTGTGGTGAGTTAGTCAATAAAAGTGAGCTTAGAGTAGTGGGGGTTAGTGTAG
TACTTTTGGGTCTGGCTGTTAGTTGTAAGAATGTTTACGTTGTGATCACGAGTAAGATCAACGTG
AATCACTAGTTAGATCAACGTGGATCACGAGTAAGATCGTGTTCAAAGGTTAGATCATTGAAGCT
ACTGATGTGTTCAAAGGTACTCTATGGGATCTAGTATCATCATGGGTTAGTATCACCAGTTTCTC
TCTGAATCATCAAATATATCCACTATCTTCCAAAGCGAGTGGTTTTCCAAATCATCGGATCTGTG
TTGATTCTCGTGCTGACATCATGTCCAATATCAACTCTGTCCTTT
Right flanking sequence: Indices 59913 -- 60412
TCCTACGATCTGTTACCATCCTCCCATATCTATTTCCATCCTCCCACACCCCTTACCCTCCACAC
CCACCACCCCCCTACTTCCTCCCTTCCCAACTAAAATACATTATAATACAGATGCGATTAAATAG
GCAACGGGTAGATCCCCGCCAACCGGTCAATAGTAGGCGCAATCACCGGGTGGCTCAACACTGGC
CCGATCACAGGCACCAGCCGCAAGAACTGGACAATGGTGCCGAAGAAATCGCCAAACAACCCGAG
AATGCCAAACAACTCGACGCCAAACCCAATGAACGCGTGCTTCATGAGAATCAACACAATGCCCA
ACCCAAAGCAGAGCAGCCCCCGGATCTTCCCGGGGCGGGTGAAAAACGTCACCGTCCGCTGGGGC
CCAATGATCAAAACGATGCCTATGATGAACAAGATGTTCCCGAGCGCGAGGAAGCCCAGGTCAAA
GAAGGTCATGATCCCGAGGAAGAAGAAGAAAATGCCGCCGGCGGT
Done.