Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: scaffold7
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 184839
ACGTcount: A:0.22, C:0.28, G:0.27, T:0.22
Warning! 1 characters in sequence are not A, C, G, or T
Found at i:8314 original size:24 final size:23
Alignment explanation
Indices: 8287--8794 Score: 335
Period size: 24 Copynumber: 21.2 Consensus size: 23
8277 GTGTTGGTAG
8287 CAGTGTTGTCGTCAGTGTTGTCAC
1 CAGTGTTGTCG-CAGTGTTGTCAC
* **
8311 CAGTGTTGGTAGCAGTGTTGTCGT
1 CAGTGTT-GTCGCAGTGTTGTCAC
* *
8335 CAGTGTTGTCACCAGTGTTGGT-AG
1 CAGTGTTGTC-GCAGTGTT-GTCAC
8359 CAGTGTTGTCGTCAGTGTTGTCAC
1 CAGTGTTGTCG-CAGTGTTGTCAC
* **
8383 CAGTGTTGGTAGCAGTGTTGTCGT
1 CAGTGTT-GTCGCAGTGTTGTCAC
* *
8407 CAGTGTTGTCACCAGTGTTGGT-AG
1 CAGTGTTGTC-GCAGTGTT-GTCAC
8431 CAGTGTTGTCGTCAGTGTTGTCAC
1 CAGTGTTGTCG-CAGTGTTGTCAC
* *
8455 CAGTGTTGGTAGCAGAGTTGTCAC
1 CAGTGTT-GTCGCAGTGTTGTCAC
* **
8479 CAGTGTTGGTAGCAGTGTTGTCGT
1 CAGTGTT-GTCGCAGTGTTGTCAC
* * **
8503 CAGTGTTGGTAGCAGAGTTGTCGT
1 CAGTGTT-GTCGCAGTGTTGTCAC
* *
8527 CAGTGTTGTCACCAGTGTTGGT-AG
1 CAGTGTTGTC-GCAGTGTT-GTCAC
* * *
8551 CAGAGTTGTCACCAGTGTTGGT-AG
1 CAGTGTTGTC-GCAGTGTT-GTCAC
8575 CAGTGTTGTCGTCAGTGTTGTCAC
1 CAGTGTTGTCG-CAGTGTTGTCAC
*
8599 CAGTGTTGGTAGCAGTGTTGTCAC
1 CAGTGTT-GTCGCAGTGTTGTCAC
* ***
8623 CAGTGTTGGTAGCAGTGTTGTTGT
1 CAGTGTT-GTCGCAGTGTTGTCAC
* * *
8647 CAGTGTTATCACCAGTGTTGGT-AG
1 CAGTGTTGTC-GCAGTGTT-GTCAC
* * *
8671 CAGAGTTGTCACCAGTGTTGGT-AG
1 CAGTGTTGTC-GCAGTGTT-GTCAC
8695 CAGTGTTGTCGTCAGTGTTGTCAC
1 CAGTGTTGTCG-CAGTGTTGTCAC
* *
8719 CAGTGTTGGTAGCAGAGTTGTCAC
1 CAGTGTT-GTCGCAGTGTTGTCAC
* * **
8743 CAGTGTTGGTAGCAGAGTTGTCGT
1 CAGTGTT-GTCGCAGTGTTGTCAC
* * *
8767 CAGTGTTGGTAGCAGAGTTGTCGC
1 CAGTGTT-GTCGCAGTGTTGTCAC
8791 CAGT
1 CAGT
8795 AATGTTTCCG
Statistics
Matches: 411, Mismatches: 52, Indels: 42
0.81 0.10 0.08
Matches are distributed among these distances:
23 15 0.04
24 373 0.91
25 23 0.06
ACGTcount: A:0.16, C:0.16, G:0.33, T:0.34
Consensus pattern (23 bp):
CAGTGTTGTCGCAGTGTTGTCAC
Left flanking sequence: Indices 7787 -- 8286
ATATTTTTACCCCTTTCGAGACCAAGTTTGTAGACATTAATATTGTATGGTGCTTACACGGTTCC
AATTATTCGTATTTCGAGAGAAAAGCCTTGCTTAGTCAATTGATGTCCGAGAGTTTGCAGGTGTA
ATCCGCGTAAGGAACCTCACTACATCTCCAAACAAACCAGGTTAAACAGCCATTGTATGAGTTTA
CCTATTTGCCCTATAGAAGAGGGTGCCAAAAGAGGGCCCGACGAAAAAAGGAAAAAGAACAGAAA
AAAGGTTTAGCCCTTACGGGAAAACATCGAAAACACGTTATATCACAGGAGAAACGTTGAGGTAC
ACAGTCGGGGTAACGACGGTGGTGACTGTAACGGTGTAGCAGTCAGTGGGAAGGGGCTCTGTAGT
CAGAGCCAGGAGAGTGGGGATATAAGTGGAGGTACTAGTAGTGTACTCAGTGGTGGAGGTAGTGT
CACCGCCAGTGTTTGTGGCACTGCTTTCGTAACCAGTGTTGGTAG
Right flanking sequence: Indices 8795 -- 9294
AATGTTTCCGGTGTTAGAGGCAGAGTTAGTGGCAGTGTCTTCACCAGAGGTGCTGACATTGCTGG
CGGTGGTCTCGTCGTTTGTGGTTTCAGTGGAAGAGAGTTCAATGCCCGTGCTGAAGGAAGAGCTA
ACTTCAGTGTTCGAGGTCACGATGGTACTAGTAGAAGAGGTAGTGGCATCAGTCAACGAGGTTGG
AATCGATGTAGTGGGGACAGCAGTGGCCGTGGTCTGAAGGGTGGACAGCGTACTAGAAGAGCCGG
TGTCGGGTTGGGAAGGCTCCATAATGCACTTGAGGTTGCAGTACTTGGGGGGCTCGTTAGCACCG
CTGGGAATAGGACCCCAGTATCTAAGGGCGTTGTGGTAAATCTTGATACCGCCCAAGTTGACAGT
GTCGAGCTTGAACTTGGTCACATCGTAGCCAGTACCAATGTGGAACTGGACGTAGACCCACTTGA
ACAAGTCAGTGTAAATGTACACCATACCACTACGAGGGTCGTACT
Found at i:8319 original size:36 final size:36
Alignment explanation
Indices: 8273--8750 Score: 555
Period size: 36 Copynumber: 13.9 Consensus size: 36
8263 TGCTTTCGTA
8273 ACCAGTGTTGGTAGCAGTGTTGTCGTCAGTGTTGTC
1 ACCAGTGTTGGTAGCAGTGTTGTCGTCAGTGTTGTC
8309 ACCAGTGTTGGTAGCAGTGTTGTCGTCAGTGTTGTC
1 ACCAGTGTTGGTAGCAGTGTTGTCGTCAGTGTTGTC
8345 ACCAGTGTTGGTAGCAGTGTTGTCGTCAGTGTTGTC
1 ACCAGTGTTGGTAGCAGTGTTGTCGTCAGTGTTGTC
8381 ACCAGTGTTGGTAGCAGTGTTGTCGTCAGTGTTGTC
1 ACCAGTGTTGGTAGCAGTGTTGTCGTCAGTGTTGTC
8417 ACCAGTGTTGGTAGCAGTGTTGTCGTCAGTGTTGTC
1 ACCAGTGTTGGTAGCAGTGTTGTCGTCAGTGTTGTC
* **
8453 ACCAGTGTTGGTAGCAGAGTTGTCACCAGTGTTGGT-
1 ACCAGTGTTGGTAGCAGTGTTGTCGTCAGTGTT-GTC
* * * *
8489 AGCAGTGTT-GTCGTCAGTGTTGGTAG-CAGAGTTGTC
1 ACCAGTGTTGGTAG-CAGTGTT-GTCGTCAGTGTTGTC
** * * *
8525 GTCAGTGTT-GTCACCAGTGTTGGTAG-CAGAGTTGTC
1 ACCAGTGTTGGT-AGCAGTGTT-GTCGTCAGTGTTGTC
8561 ACCAGTGTTGGTAGCAGTGTTGTCGTCAGTGTTGTC
1 ACCAGTGTTGGTAGCAGTGTTGTCGTCAGTGTTGTC
8597 ACCAGTGTTGGT---A--------G-CAGTGTTGTC
1 ACCAGTGTTGGTAGCAGTGTTGTCGTCAGTGTTGTC
* *
8621 ACCAGTGTTGGTAGCAGTGTTGTTGTCAGTGTTATC
1 ACCAGTGTTGGTAGCAGTGTTGTCGTCAGTGTTGTC
8657 ACCAGTGTTGGTAGCA--------G--A--GTTGTC
1 ACCAGTGTTGGTAGCAGTGTTGTCGTCAGTGTTGTC
8681 ACCAGTGTTGGTAGCAGTGTTGTCGTCAGTGTTGTC
1 ACCAGTGTTGGTAGCAGTGTTGTCGTCAGTGTTGTC
* **
8717 ACCAGTGTTGGTAGCAGAGTTGTCACCAGTGTTG
1 ACCAGTGTTGGTAGCAGTGTTGTCGTCAGTGTTG
8751 GTAGCAGAGT
Statistics
Matches: 388, Mismatches: 23, Indels: 62
0.82 0.05 0.13
Matches are distributed among these distances:
24 43 0.11
25 1 0.00
26 1 0.00
27 1 0.00
28 1 0.00
32 1 0.00
33 1 0.00
34 1 0.00
35 9 0.02
36 323 0.83
37 6 0.02
ACGTcount: A:0.16, C:0.16, G:0.33, T:0.35
Consensus pattern (36 bp):
ACCAGTGTTGGTAGCAGTGTTGTCGTCAGTGTTGTC
Left flanking sequence: Indices 7773 -- 8272
CAAAGGGCTTAAGAATATTTTTACCCCTTTCGAGACCAAGTTTGTAGACATTAATATTGTATGGT
GCTTACACGGTTCCAATTATTCGTATTTCGAGAGAAAAGCCTTGCTTAGTCAATTGATGTCCGAG
AGTTTGCAGGTGTAATCCGCGTAAGGAACCTCACTACATCTCCAAACAAACCAGGTTAAACAGCC
ATTGTATGAGTTTACCTATTTGCCCTATAGAAGAGGGTGCCAAAAGAGGGCCCGACGAAAAAAGG
AAAAAGAACAGAAAAAAGGTTTAGCCCTTACGGGAAAACATCGAAAACACGTTATATCACAGGAG
AAACGTTGAGGTACACAGTCGGGGTAACGACGGTGGTGACTGTAACGGTGTAGCAGTCAGTGGGA
AGGGGCTCTGTAGTCAGAGCCAGGAGAGTGGGGATATAAGTGGAGGTACTAGTAGTGTACTCAGT
GGTGGAGGTAGTGTCACCGCCAGTGTTTGTGGCACTGCTTTCGTA
Right flanking sequence: Indices 8751 -- 9250
GTAGCAGAGTTGTCGTCAGTGTTGGTAGCAGAGTTGTCGCCAGTAATGTTTCCGGTGTTAGAGGC
AGAGTTAGTGGCAGTGTCTTCACCAGAGGTGCTGACATTGCTGGCGGTGGTCTCGTCGTTTGTGG
TTTCAGTGGAAGAGAGTTCAATGCCCGTGCTGAAGGAAGAGCTAACTTCAGTGTTCGAGGTCACG
ATGGTACTAGTAGAAGAGGTAGTGGCATCAGTCAACGAGGTTGGAATCGATGTAGTGGGGACAGC
AGTGGCCGTGGTCTGAAGGGTGGACAGCGTACTAGAAGAGCCGGTGTCGGGTTGGGAAGGCTCCA
TAATGCACTTGAGGTTGCAGTACTTGGGGGGCTCGTTAGCACCGCTGGGAATAGGACCCCAGTAT
CTAAGGGCGTTGTGGTAAATCTTGATACCGCCCAAGTTGACAGTGTCGAGCTTGAACTTGGTCAC
ATCGTAGCCAGTACCAATGTGGAACTGGACGTAGACCCACTTGAA
Found at i:8354 original size:60 final size:60
Alignment explanation
Indices: 8299--8774 Score: 686
Period size: 60 Copynumber: 7.7 Consensus size: 60
8289 GTGTTGTCGT
8299 CAGTGTTGTCACCAGTGTTGGTAGCAGTGTTGTCGTCAGTGTTGTCACCAGTGTTGGTAGCAGTG
1 CAGTGTTGTCACCAGTGTTGGTAGCAGTGTTGTCGTCAGTGTTGTCACCAGTGTTGGT---A---
8364 TTGTCG
60 -----G
8370 TCAGTGTTGTCACCAGTGTTGGTAGCAGTGTTGTCGTCAGTGTTGTCACCAGTGTTGGTAG
1 -CAGTGTTGTCACCAGTGTTGGTAGCAGTGTTGTCGTCAGTGTTGTCACCAGTGTTGGTAG
** * * *
8431 CAGTGTTGTCGTCAGTGTT-GTCACCAGTGTTGGTAG-CAGAGTTGTCACCAGTGTTGGTAG
1 CAGTGTTGTCACCAGTGTTGGT-AGCAGTGTT-GTCGTCAGTGTTGTCACCAGTGTTGGTAG
** *
8491 CAGTGTTGTCGTCAGTGTTGGTAGCAGAGTTGTCGTCAGTGTTGTCACCAGTGTTGGTAG
1 CAGTGTTGTCACCAGTGTTGGTAGCAGTGTTGTCGTCAGTGTTGTCACCAGTGTTGGTAG
*
8551 CAGAGTTGTCACCAGTGTTGGTAGCAGTGTTGTCGTCAGTGTTGTCACCAGTGTTGGTAG
1 CAGTGTTGTCACCAGTGTTGGTAGCAGTGTTGTCGTCAGTGTTGTCACCAGTGTTGGTAG
* *
8611 CAGTGTTGTCACCAGTGTTGGTAGCAGTGTTGTTGTCAGTGTTATCACCAGTGTTGGTAG
1 CAGTGTTGTCACCAGTGTTGGTAGCAGTGTTGTCGTCAGTGTTGTCACCAGTGTTGGTAG
*
8671 CAGAGTTGTCACCAGTGTTGGTAGCAGTGTTGTCGTCAGTGTTGTCACCAGTGTTGGTAG
1 CAGTGTTGTCACCAGTGTTGGTAGCAGTGTTGTCGTCAGTGTTGTCACCAGTGTTGGTAG
* *
8731 CAGAGTTGTCACCAGTGTTGGTAGCAGAGTTGTCGTCAGTGTTG
1 CAGTGTTGTCACCAGTGTTGGTAGCAGTGTTGTCGTCAGTGTTG
8775 GTAGCAGAGT
Statistics
Matches: 380, Mismatches: 20, Indels: 20
0.90 0.05 0.05
Matches are distributed among these distances:
59 5 0.01
60 310 0.82
61 6 0.02
69 1 0.00
72 58 0.15
ACGTcount: A:0.16, C:0.16, G:0.33, T:0.34
Consensus pattern (60 bp):
CAGTGTTGTCACCAGTGTTGGTAGCAGTGTTGTCGTCAGTGTTGTCACCAGTGTTGGTAG
Left flanking sequence: Indices 7799 -- 8298
CTTTCGAGACCAAGTTTGTAGACATTAATATTGTATGGTGCTTACACGGTTCCAATTATTCGTAT
TTCGAGAGAAAAGCCTTGCTTAGTCAATTGATGTCCGAGAGTTTGCAGGTGTAATCCGCGTAAGG
AACCTCACTACATCTCCAAACAAACCAGGTTAAACAGCCATTGTATGAGTTTACCTATTTGCCCT
ATAGAAGAGGGTGCCAAAAGAGGGCCCGACGAAAAAAGGAAAAAGAACAGAAAAAAGGTTTAGCC
CTTACGGGAAAACATCGAAAACACGTTATATCACAGGAGAAACGTTGAGGTACACAGTCGGGGTA
ACGACGGTGGTGACTGTAACGGTGTAGCAGTCAGTGGGAAGGGGCTCTGTAGTCAGAGCCAGGAG
AGTGGGGATATAAGTGGAGGTACTAGTAGTGTACTCAGTGGTGGAGGTAGTGTCACCGCCAGTGT
TTGTGGCACTGCTTTCGTAACCAGTGTTGGTAGCAGTGTTGTCGT
Right flanking sequence: Indices 8775 -- 9274
GTAGCAGAGTTGTCGCCAGTAATGTTTCCGGTGTTAGAGGCAGAGTTAGTGGCAGTGTCTTCACC
AGAGGTGCTGACATTGCTGGCGGTGGTCTCGTCGTTTGTGGTTTCAGTGGAAGAGAGTTCAATGC
CCGTGCTGAAGGAAGAGCTAACTTCAGTGTTCGAGGTCACGATGGTACTAGTAGAAGAGGTAGTG
GCATCAGTCAACGAGGTTGGAATCGATGTAGTGGGGACAGCAGTGGCCGTGGTCTGAAGGGTGGA
CAGCGTACTAGAAGAGCCGGTGTCGGGTTGGGAAGGCTCCATAATGCACTTGAGGTTGCAGTACT
TGGGGGGCTCGTTAGCACCGCTGGGAATAGGACCCCAGTATCTAAGGGCGTTGTGGTAAATCTTG
ATACCGCCCAAGTTGACAGTGTCGAGCTTGAACTTGGTCACATCGTAGCCAGTACCAATGTGGAA
CTGGACGTAGACCCACTTGAACAAGTCAGTGTAAATGTACACCAT
Found at i:11939 original size:48 final size:48
Alignment explanation
Indices: 11870--13123 Score: 1803
Period size: 48 Copynumber: 26.1 Consensus size: 48
11860 ATGACGAGTC
* * *
11870 AGAAGATGCCTGAGTCAGCGAAGGCACGGCGGACGAAGACTCCTCGGA
1 AGAAGAAGCCTCAGTCAGCGAAGGCACAGCGGACGAAGACTCCTCGGA
*
11918 AGAAGAAGCCTCAGTCAGCGAAGGCACAGCGGACGAAGACTCCTGGGA
1 AGAAGAAGCCTCAGTCAGCGAAGGCACAGCGGACGAAGACTCCTCGGA
* * * *
11966 CGAAGAAGCCTCAGTCAGCGAAGGAACGGCAGACGAAGACTCCTCGGA
1 AGAAGAAGCCTCAGTCAGCGAAGGCACAGCGGACGAAGACTCCTCGGA
*
12014 AGAAGAAGCCTCAGTCAGCGAAGGCACAGCGGACGAAGACTCCTGGGA
1 AGAAGAAGCCTCAGTCAGCGAAGGCACAGCGGACGAAGACTCCTCGGA
* * *
12062 CGAAGAAGCCTCAGTCAGCGAAGGCACGGCGGACGAAGACTCCTCAGA
1 AGAAGAAGCCTCAGTCAGCGAAGGCACAGCGGACGAAGACTCCTCGGA
* *
12110 CGAAGAAGCCTCAGTCAGCGAAGGCACAGCGGACGAAGACTCCTGGGA
1 AGAAGAAGCCTCAGTCAGCGAAGGCACAGCGGACGAAGACTCCTCGGA
* *
12158 CGAAGAAGCCTCAGTCAGCGAAGGCACAGCGGACGAAGACTCCTGGGA
1 AGAAGAAGCCTCAGTCAGCGAAGGCACAGCGGACGAAGACTCCTCGGA
* *
12206 AGAGGAAGCCTCAGTCAGCGAAGGCACGGCGGACGAAGACTCCTCGGA
1 AGAAGAAGCCTCAGTCAGCGAAGGCACAGCGGACGAAGACTCCTCGGA
* *
12254 AGAAGAAGCCTCAGTCAGCGAAGGCACGGCGGACGAAGACTCCTCAGA
1 AGAAGAAGCCTCAGTCAGCGAAGGCACAGCGGACGAAGACTCCTCGGA
* *
12302 CGAAGAAGCCTCAGTCAGCGAAGGCACAGCGGACGAAGACTCCTGGGA
1 AGAAGAAGCCTCAGTCAGCGAAGGCACAGCGGACGAAGACTCCTCGGA
* * *
12350 AGAGGAAGCCTCAGTCAGCGAAGGCACGGCGGACGAAGACTCCTCAGA
1 AGAAGAAGCCTCAGTCAGCGAAGGCACAGCGGACGAAGACTCCTCGGA
* *
12398 CGAAGAAGCCTCAGTCAGCGAAGGCACAGCGGACGAAGACTCCTGGGA
1 AGAAGAAGCCTCAGTCAGCGAAGGCACAGCGGACGAAGACTCCTCGGA
* * * *
12446 AGAGGAAGCCTCAGTCAGCGAAGGCACGGCAGACGAAGACTCCTGGGA
1 AGAAGAAGCCTCAGTCAGCGAAGGCACAGCGGACGAAGACTCCTCGGA
* *
12494 CGAAGAAGCCTCAGTCAGCGAAGGCACAGCGGACGAAGACTCCTGGGA
1 AGAAGAAGCCTCAGTCAGCGAAGGCACAGCGGACGAAGACTCCTCGGA
* * * *
12542 AGAGGAAGCCTCAGTCAGCGAAGGCACGGCAGACGAAGACTCCTCAGA
1 AGAAGAAGCCTCAGTCAGCGAAGGCACAGCGGACGAAGACTCCTCGGA
*
12590 CGAAGAAGCCTCAGTCAGCGAAGGCACAGCGGACGAAGACTCCTCGGA
1 AGAAGAAGCCTCAGTCAGCGAAGGCACAGCGGACGAAGACTCCTCGGA
** * * * *
12638 AGAAGGGGCCTCGGT-AGAAGAAGGCACGGCGGACGAGGACTCCTCGGA
1 AGAAGAAGCCTCAGTCAG-CGAAGGCACAGCGGACGAAGACTCCTCGGA
*
12686 AGAAGAAGCCTCAGTCAGCGAAGGCACAGCGGACGGAGACTCCTCGGA
1 AGAAGAAGCCTCAGTCAGCGAAGGCACAGCGGACGAAGACTCCTCGGA
* *
12734 AGAAGAAGCCTCAGTCAGCGAAGGCACAGCAGACGAGGACTCCTCGGA
1 AGAAGAAGCCTCAGTCAGCGAAGGCACAGCGGACGAAGACTCCTCGGA
* * *
12782 AGAAGAAGCCTCAGTCAGCGAGGGCACAGCAGACGAGGACTCCTCGGA
1 AGAAGAAGCCTCAGTCAGCGAAGGCACAGCGGACGAAGACTCCTCGGA
* *
12830 CGAAGAAGCCTCAGTCAGCGAAGGCACAGCGGACGAAGACTCCTGGGA
1 AGAAGAAGCCTCAGTCAGCGAAGGCACAGCGGACGAAGACTCCTCGGA
** * * * * *
12878 AGAAGGGGCCTCGGT-AGAAGAAGGCACGGCGGACGAGGACTCCTGGGA
1 AGAAGAAGCCTCAGTCAG-CGAAGGCACAGCGGACGAAGACTCCTCGGA
* * * * *
12926 AGAAGAGGCCTCGGT-AGAAGAAGGCACGGCGGACGAGGACTCCTCGGA
1 AGAAGAAGCCTCAGTCAG-CGAAGGCACAGCGGACGAAGACTCCTCGGA
* * *
12974 AGAAGAAGCCTCAGTCAGCGAGGGCACAGCAGACGAGGACTCCTCGGA
1 AGAAGAAGCCTCAGTCAGCGAAGGCACAGCGGACGAAGACTCCTCGGA
* *
13022 CGAAGAAGCCTCAGTCAGCGAAGGCACAGCGGACGAAGACTCCTGGGA
1 AGAAGAAGCCTCAGTCAGCGAAGGCACAGCGGACGAAGACTCCTCGGA
* * *
13070 CGAAGAAGCCTCAGTCAGCGAAGGCACGGCAGACGAAGACTCCTCGGA
1 AGAAGAAGCCTCAGTCAGCGAAGGCACAGCGGACGAAGACTCCTCGGA
*
13118 CGAAGA
1 AGAAGA
13124 CTCCTGAGTC
Statistics
Matches: 1096, Mismatches: 106, Indels: 8
0.91 0.09 0.01
Matches are distributed among these distances:
47 4 0.00
48 1088 0.99
49 4 0.00
ACGTcount: A:0.31, C:0.26, G:0.34, T:0.08
Consensus pattern (48 bp):
AGAAGAAGCCTCAGTCAGCGAAGGCACAGCGGACGAAGACTCCTCGGA
Left flanking sequence: Indices 11370 -- 11869
GTTACGGATTAGATGTGCTGATGAATCAACGTTTTTAACAGCCATTTATTGAAAAAAACCCTAAA
ACAAGCTTGCGGAAGAACCCGCTCGAAATCGAAATGGCGATTACTCAAATGCTTGACATCGAGTA
ATCAGCTGAGTAGAGCGAAATTGGGGTATCAGTTGATGGGACGAATGTACAAGTACACCGTGGGA
GTGACCGTAGCAGTCGCAGTCTTGATGATACAATCCGTGGGAATGGGACCCGTCTCCAGAGCCAG
ATCAGTGGAGATGTAGTACGAAGAGCTAGTGGAGTACTCAGTCGAGTGGTCAGAAGACGAGGGAG
AAGCAGACAGGGTCTCGGACAGGGACTCAACACTAGAGGAAGGAACCTCAGTCAGCGAAGGAAGA
GCGGAGGAAGACTCAGATTCGGAGGAGGCTTCTGTGGAAGATGGGATGGCAGACGAAGATTGTTC
GGAAGAAGAGACTTCAGTCAGAGAAGGAATTGCCGATGACGAGTC
Right flanking sequence: Indices 13124 -- 13623
CTCCTGAGTCGAAGAGGCCTCGGTAGAAGAAGGCACGGCGGACGAAGACTCCTCGGAAGAAGAAG
CCTGAGTCAGCGAAGGCACGGCGGACGAAGACTCTTCAGACGAAGAAGCCTGGGTCAGCGATTCA
ACAGCAGAAGAAGACGAGGGAATCTCAGAAGAAGTGTCAGTGGGAGCAGACGAAGTGGAAACAGC
CAGAGACGAAGAAGGAAGCGACGTCAGAGTGACCGACGGGGTTGCAGACGAGGTCGAAAGGACGG
TAGAGGTAGTGGACAGCACGGTGGAAGAGTCGTCATCGGTGGGCTGCGGGGGCTCCATGACACAA
GCTTCACATTTTCCAGGAATAGGAGTCGAGCCCGAGGGGATGGGACCGTCGTACTTGAGACCATG
GAGGATGAAAGTACCCTCAAAGTTGGCCGAGTCCCGGCGGAACAACCGAGGGTTGTAGCCTCTAC
CGATCTCGAATCTGACAGACTTTCTTCTCAAGAAGTCAGCGTACA
Found at i:13119 original size:63 final size:63
Alignment explanation
Indices: 13051--13186 Score: 193
Period size: 63 Copynumber: 2.2 Consensus size: 63
13041 GAAGGCACAG
* *
13051 CGGACGAAGACTCCTGGGACGAAGAAGCCTCAGTCAG-CGAAGGCACGGCAGACGAAGACTCCT
1 CGGACGAAGACTCCTGAGACGAAGAAGCCTCAGT-AGAAGAAGGCACGGCAGACGAAGACTCCT
* * * *
13114 CGGACGAAGACTCCTGAGTCGAAGAGGCCTCGGTAGAAGAAGGCACGGCGGACGAAGACTCCT
1 CGGACGAAGACTCCTGAGACGAAGAAGCCTCAGTAGAAGAAGGCACGGCAGACGAAGACTCCT
*
13177 CGGAAGAAGA
1 CGGACGAAGA
13187 AGCCTGAGTC
Statistics
Matches: 65, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
62 2 0.03
63 63 0.97
ACGTcount: A:0.31, C:0.26, G:0.34, T:0.10
Consensus pattern (63 bp):
CGGACGAAGACTCCTGAGACGAAGAAGCCTCAGTAGAAGAAGGCACGGCAGACGAAGACTCCT
Left flanking sequence: Indices 12551 -- 13050
CTCAGTCAGCGAAGGCACGGCAGACGAAGACTCCTCAGACGAAGAAGCCTCAGTCAGCGAAGGCA
CAGCGGACGAAGACTCCTCGGAAGAAGGGGCCTCGGTAGAAGAAGGCACGGCGGACGAGGACTCC
TCGGAAGAAGAAGCCTCAGTCAGCGAAGGCACAGCGGACGGAGACTCCTCGGAAGAAGAAGCCTC
AGTCAGCGAAGGCACAGCAGACGAGGACTCCTCGGAAGAAGAAGCCTCAGTCAGCGAGGGCACAG
CAGACGAGGACTCCTCGGACGAAGAAGCCTCAGTCAGCGAAGGCACAGCGGACGAAGACTCCTGG
GAAGAAGGGGCCTCGGTAGAAGAAGGCACGGCGGACGAGGACTCCTGGGAAGAAGAGGCCTCGGT
AGAAGAAGGCACGGCGGACGAGGACTCCTCGGAAGAAGAAGCCTCAGTCAGCGAGGGCACAGCAG
ACGAGGACTCCTCGGACGAAGAAGCCTCAGTCAGCGAAGGCACAG
Right flanking sequence: Indices 13187 -- 13686
AGCCTGAGTCAGCGAAGGCACGGCGGACGAAGACTCTTCAGACGAAGAAGCCTGGGTCAGCGATT
CAACAGCAGAAGAAGACGAGGGAATCTCAGAAGAAGTGTCAGTGGGAGCAGACGAAGTGGAAACA
GCCAGAGACGAAGAAGGAAGCGACGTCAGAGTGACCGACGGGGTTGCAGACGAGGTCGAAAGGAC
GGTAGAGGTAGTGGACAGCACGGTGGAAGAGTCGTCATCGGTGGGCTGCGGGGGCTCCATGACAC
AAGCTTCACATTTTCCAGGAATAGGAGTCGAGCCCGAGGGGATGGGACCGTCGTACTTGAGACCA
TGGAGGATGAAAGTACCCTCAAAGTTGGCCGAGTCCCGGCGGAACAACCGAGGGTTGTAGCCTCT
ACCGATCTCGAATCTGACAGACTTTCTTCTCAAGAAGTCAGCGTACACGGTCAAGACACCGGCCT
CGTATGACCACGACCAGATCTTACCGTCGGAGGCAATGGCATTCC
Found at i:13247 original size:48 final size:48
Alignment explanation
Indices: 13114--13249 Score: 175
Period size: 48 Copynumber: 2.8 Consensus size: 48
13104 GAAGACTCCT
* * * * *
13114 CGGACGAAGACTCCTGAGTCGAAGAGGCCTCGGT-AGAAGAAGGCACGG
1 CGGACGAAGACTCCTCAGACGAAGAAGCCTGGGTCAG-CGAAGGCACGG
* * *
13162 CGGACGAAGACTCCTCGGAAGAAGAAGCCTGAGTCAGCGAAGGCACGG
1 CGGACGAAGACTCCTCAGACGAAGAAGCCTGGGTCAGCGAAGGCACGG
*
13210 CGGACGAAGACTCTTCAGACGAAGAAGCCTGGGTCAGCGA
1 CGGACGAAGACTCCTCAGACGAAGAAGCCTGGGTCAGCGA
13250 TTCAACAGCA
Statistics
Matches: 75, Mismatches: 12, Indels: 2
0.84 0.13 0.02
Matches are distributed among these distances:
48 73 0.97
49 2 0.03
ACGTcount: A:0.30, C:0.24, G:0.35, T:0.10
Consensus pattern (48 bp):
CGGACGAAGACTCCTCAGACGAAGAAGCCTGGGTCAGCGAAGGCACGG
Left flanking sequence: Indices 12614 -- 13113
CACAGCGGACGAAGACTCCTCGGAAGAAGGGGCCTCGGTAGAAGAAGGCACGGCGGACGAGGACT
CCTCGGAAGAAGAAGCCTCAGTCAGCGAAGGCACAGCGGACGGAGACTCCTCGGAAGAAGAAGCC
TCAGTCAGCGAAGGCACAGCAGACGAGGACTCCTCGGAAGAAGAAGCCTCAGTCAGCGAGGGCAC
AGCAGACGAGGACTCCTCGGACGAAGAAGCCTCAGTCAGCGAAGGCACAGCGGACGAAGACTCCT
GGGAAGAAGGGGCCTCGGTAGAAGAAGGCACGGCGGACGAGGACTCCTGGGAAGAAGAGGCCTCG
GTAGAAGAAGGCACGGCGGACGAGGACTCCTCGGAAGAAGAAGCCTCAGTCAGCGAGGGCACAGC
AGACGAGGACTCCTCGGACGAAGAAGCCTCAGTCAGCGAAGGCACAGCGGACGAAGACTCCTGGG
ACGAAGAAGCCTCAGTCAGCGAAGGCACGGCAGACGAAGACTCCT
Right flanking sequence: Indices 13250 -- 13749
TTCAACAGCAGAAGAAGACGAGGGAATCTCAGAAGAAGTGTCAGTGGGAGCAGACGAAGTGGAAA
CAGCCAGAGACGAAGAAGGAAGCGACGTCAGAGTGACCGACGGGGTTGCAGACGAGGTCGAAAGG
ACGGTAGAGGTAGTGGACAGCACGGTGGAAGAGTCGTCATCGGTGGGCTGCGGGGGCTCCATGAC
ACAAGCTTCACATTTTCCAGGAATAGGAGTCGAGCCCGAGGGGATGGGACCGTCGTACTTGAGAC
CATGGAGGATGAAAGTACCCTCAAAGTTGGCCGAGTCCCGGCGGAACAACCGAGGGTTGTAGCCT
CTACCGATCTCGAATCTGACAGACTTTCTTCTCAAGAAGTCAGCGTACACGGTCAAGACACCGGC
CTCGTATGACCACGACCAGATCTTACCGTCGGAGGCAATGGCATTCCCATTACCAAATCCAGCCA
CCTTGATGTTGTAGGGCACTCTCTCGGCAATCACCTTAATTGCAG
Found at i:13263 original size:111 final size:111
Alignment explanation
Indices: 13041--13266 Score: 283
Period size: 111 Copynumber: 2.0 Consensus size: 111
13031 CTCAGTCAGC
* *
13041 GAAGGCACAGCGGACGAAGACTCCTGGGACGAAGAAGCCTCAGTCAGCGAAGGCACGGCAGACGA
1 GAAGGCACAGCGGACGAAGACTCCTCGGAAGAAGAAGCCTCAGTCAGCGAAGGCACGGCAGACGA
* ** ** * *
13106 AGACTCCTCGGACGAAGACTCCTGAGTCGAAGAGGCCTCGGTAGAA
66 AGACTCCTCAGACGAAGAAGCCTGAGTCGAAGAGGCAACAGCAGAA
* * *
13152 GAAGGCACGGCGGACGAAGACTCCTCGGAAGAAGAAGCCTGAGTCAGCGAAGGCACGGCGGACGA
1 GAAGGCACAGCGGACGAAGACTCCTCGGAAGAAGAAGCCTCAGTCAGCGAAGGCACGGCAGACGA
* * * **
13217 AGACTCTTCAGACGAAGAAGCCTGGGTC-AGCGATTCAACAGCAGAA
66 AGACTCCTCAGACGAAGAAGCCTGAGTCGA-AGAGGCAACAGCAGAA
13263 GAAG
1 GAAG
13267 ACGAGGGAAT
Statistics
Matches: 97, Mismatches: 17, Indels: 2
0.84 0.15 0.02
Matches are distributed among these distances:
110 1 0.01
111 96 0.99
ACGTcount: A:0.32, C:0.25, G:0.34, T:0.10
Consensus pattern (111 bp):
GAAGGCACAGCGGACGAAGACTCCTCGGAAGAAGAAGCCTCAGTCAGCGAAGGCACGGCAGACGA
AGACTCCTCAGACGAAGAAGCCTGAGTCGAAGAGGCAACAGCAGAA
Left flanking sequence: Indices 12541 -- 13040
AAGAGGAAGCCTCAGTCAGCGAAGGCACGGCAGACGAAGACTCCTCAGACGAAGAAGCCTCAGTC
AGCGAAGGCACAGCGGACGAAGACTCCTCGGAAGAAGGGGCCTCGGTAGAAGAAGGCACGGCGGA
CGAGGACTCCTCGGAAGAAGAAGCCTCAGTCAGCGAAGGCACAGCGGACGGAGACTCCTCGGAAG
AAGAAGCCTCAGTCAGCGAAGGCACAGCAGACGAGGACTCCTCGGAAGAAGAAGCCTCAGTCAGC
GAGGGCACAGCAGACGAGGACTCCTCGGACGAAGAAGCCTCAGTCAGCGAAGGCACAGCGGACGA
AGACTCCTGGGAAGAAGGGGCCTCGGTAGAAGAAGGCACGGCGGACGAGGACTCCTGGGAAGAAG
AGGCCTCGGTAGAAGAAGGCACGGCGGACGAGGACTCCTCGGAAGAAGAAGCCTCAGTCAGCGAG
GGCACAGCAGACGAGGACTCCTCGGACGAAGAAGCCTCAGTCAGC
Right flanking sequence: Indices 13267 -- 13766
ACGAGGGAATCTCAGAAGAAGTGTCAGTGGGAGCAGACGAAGTGGAAACAGCCAGAGACGAAGAA
GGAAGCGACGTCAGAGTGACCGACGGGGTTGCAGACGAGGTCGAAAGGACGGTAGAGGTAGTGGA
CAGCACGGTGGAAGAGTCGTCATCGGTGGGCTGCGGGGGCTCCATGACACAAGCTTCACATTTTC
CAGGAATAGGAGTCGAGCCCGAGGGGATGGGACCGTCGTACTTGAGACCATGGAGGATGAAAGTA
CCCTCAAAGTTGGCCGAGTCCCGGCGGAACAACCGAGGGTTGTAGCCTCTACCGATCTCGAATCT
GACAGACTTTCTTCTCAAGAAGTCAGCGTACACGGTCAAGACACCGGCCTCGTATGACCACGACC
AGATCTTACCGTCGGAGGCAATGGCATTCCCATTACCAAATCCAGCCACCTTGATGTTGTAGGGC
ACTCTCTCGGCAATCACCTTAATTGCAGACTTGGGAGAGTCCAAA
Found at i:15877 original size:10 final size:10
Alignment explanation
Indices: 15858--15919 Score: 88
Period size: 10 Copynumber: 6.2 Consensus size: 10
15848 CGAATTCGTA
*
15858 ATATTCCACG
1 ATATTTCACG
15868 ATATTTCACG
1 ATATTTCACG
15878 ATATTTCACG
1 ATATTTCACG
*
15888 ATATTTCAAG
1 ATATTTCACG
*
15898 ATATCTCACG
1 ATATTTCACG
*
15908 ATAATTCACG
1 ATATTTCACG
15918 AT
1 AT
15920 CGGCTTTATA
Statistics
Matches: 46, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
10 46 1.00
ACGTcount: A:0.34, C:0.21, G:0.10, T:0.35
Consensus pattern (10 bp):
ATATTTCACG
Left flanking sequence: Indices 15358 -- 15857
TCACGTCAACGTGGCCAGATTGCGAAGATAGCGAGCTGATTGGATACTAGTATAACTGGCAAACG
CCATTACCGAACCGTTGCTTCCACGATATGCATGTACACTTAACGGTTTCGTAGACTCACATGGG
CATCACAAAACCAAACGGGCGAAAAATAGACGAATTTAACCGTTTGGATCAGCACACCACAATAC
GCGTTTGTTGATAACATATAAGGGGCATTGTAAGTGTGGACAAACCCCTGCTTGTGGCTTTGAGG
TGGGACACCTGCCCGGGTTCCAGAAGCGCCACAAACCCGTCCGCCTCACCAACGCCTGAGTCGCG
CACACCCAATTTACTACGAGCGACCCCTATGACTAAACGGGTTAAATGCTTCGTCGCGACACAAA
CCGATCCAGAGCAAGAAAAATCTCGTTTCAGGTCGCTGTATCCGCCTTCGCTAACAGCAACCTCG
TAACTGCCAAAAACGCAGGTATTTCTACCTCCAATCGAATTCGTA
Right flanking sequence: Indices 15920 -- 16419
CGGCTTTATATCGAATCCACCAACACCTCTCCGTAAATCTTCCTTTCCTTGTATTGTGCTACCTA
TCTACTTGATGTCAAACACCGGCTTCAACTTCTTGATCAACAACCAGTCGTCTCTCAGCACGGTG
TCTCTAAACGCCGGGTCCTTCAACGTGTCGATGGACCTACGCGTGATCAACGAGTACAAGTTGTC
CAGCTCGTCGACGTGACGGCCCCACACCGGCTGGGCCAGCGACGGGTTCTCCAACCGCATCGCCA
CACCCTGCGCGGTCTGGCCCTTCTTGACCAGGTCCACACCCTTATGGGCCACCTCCAACGAGGTG
ACCCGTCCAAGCACCATGATGTTGGGCTGCCCGTTGGCGTCTCTGCGCACGGCACAGATGGGGGT
GCCCACCTTCAACGCGCCCTCCATCACGTCGACACCGATGATCATCGGGTTACGCTTGTTGATGA
TCTGCAACGTCTTGAGCACACACGGCATCACCGCGTACTCCATGA
Found at i:17863 original size:15 final size:15
Alignment explanation
Indices: 17843--17881 Score: 60
Period size: 15 Copynumber: 2.6 Consensus size: 15
17833 GCTCCTCGAG
*
17843 CGCCGCCTTCTCCGC
1 CGCCGCCTTCTCCAC
17858 CGCCGCCTTCTCCAC
1 CGCCGCCTTCTCCAC
*
17873 CGCGGCCTT
1 CGCCGCCTT
17882 GCGCTTGGCC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.03, C:0.56, G:0.21, T:0.21
Consensus pattern (15 bp):
CGCCGCCTTCTCCAC
Left flanking sequence: Indices 17343 -- 17842
AACGAGTCGCGGAACGCGTTGTTGGCGGTCAGCTCCCACCCGTACAACCGGTCGATCTTGTTCAA
CGCCACAATGAACGGCGCCTTGCGGTCGCGCAACAACCGGATCAGCTCGAGCGTCTGCTGCTCCA
ACCCGTGCATGATGTCGATCACCAAGATGGCAATGTTACAGAGCGACGAGCCCCGCGACCGCAAG
TTGGTGAACGACTCGTGGCCGGGGGTGTCGATGATCAACAACCCGGGCACGTCGAACGTCTGCTT
CTCGTACTTGGCCATCACCGCGGTCTTCTGCTTGATGGCGTCCATGGGGAAGTAGGTGGCACCGA
TCTGCTGGGTGATACCGCCGGCCTCGCCGCCCTGGACGTTGGTCTGGCGGATCTTGTCCAAAAGC
TTGGTCTTACCCGTGTCGACATGGCCCAAAATACAGCAAATGGGCGAGCGGAGGTCCTTGTCGGA
GGCACCGCCCGACGCCTGGGTGCGCTTGCGGGCCTGCTCCTCGAG
Right flanking sequence: Indices 17882 -- 18381
GCGCTTGGCCTCCTCCTGCGCCCGGAGCGCCGCCTCGGCCTCGGCTCGCTCGCGGGCCTTTTGCT
CCTCCAACAGCTTCTCGGCCTCCTCCTTCTTCTCGGCCTCCTCCTCGTCGTCGAGCGCCGTCTCC
CAGTCGTCCACCACCGGCTCGTCCTCGTCGGCAAGCGCCTCCCACAGGTCGGCCACCTCCTCGGG
CTCGTCCTTCTTGGGCTCCTCCTTCTTGTGCTGCACCTTGTTCAACTGGAACGCCTTCGGCTTGA
TCACCTTTTTCGGCTCCGGCTTGGTTTCCTTTTCGGGCATGGTTCCCTCCTTCTTCTGGAGAGCA
GCGATCTTGACGTTGCCCTGCGCCAACAACGCGGCGCGGCGGCGCTCCTGCAACTTCTTCTCCTC
CTTCTGCTTCTTGGTGAGGAACTTGCCCTCGGCCTTCAACTGCTCGTCGCGGGCCTTCTTGGCCG
CCCGCTTGGCGGCCCGGGCGTCCTCCTTGTCCTGCTCCTCCTTGC
Found at i:17978 original size:18 final size:18
Alignment explanation
Indices: 17957--17991 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
17947 CCTCCAACAG
17957 CTTCTCGGCCTCCTCCTT
1 CTTCTCGGCCTCCTCCTT
17975 CTTCTCGGCCTCCTCCT
1 CTTCTCGGCCTCCTCCT
17992 CGTCGTCGAG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.00, C:0.51, G:0.11, T:0.37
Consensus pattern (18 bp):
CTTCTCGGCCTCCTCCTT
Left flanking sequence: Indices 17457 -- 17956
AGCGTCTGCTGCTCCAACCCGTGCATGATGTCGATCACCAAGATGGCAATGTTACAGAGCGACGA
GCCCCGCGACCGCAAGTTGGTGAACGACTCGTGGCCGGGGGTGTCGATGATCAACAACCCGGGCA
CGTCGAACGTCTGCTTCTCGTACTTGGCCATCACCGCGGTCTTCTGCTTGATGGCGTCCATGGGG
AAGTAGGTGGCACCGATCTGCTGGGTGATACCGCCGGCCTCGCCGCCCTGGACGTTGGTCTGGCG
GATCTTGTCCAAAAGCTTGGTCTTACCCGTGTCGACATGGCCCAAAATACAGCAAATGGGCGAGC
GGAGGTCCTTGTCGGAGGCACCGCCCGACGCCTGGGTGCGCTTGCGGGCCTGCTCCTCGAGCGCC
GCCTTCTCCGCCGCCGCCTTCTCCACCGCGGCCTTGCGCTTGGCCTCCTCCTGCGCCCGGAGCGC
CGCCTCGGCCTCGGCTCGCTCGCGGGCCTTTTGCTCCTCCAACAG
Right flanking sequence: Indices 17992 -- 18491
CGTCGTCGAGCGCCGTCTCCCAGTCGTCCACCACCGGCTCGTCCTCGTCGGCAAGCGCCTCCCAC
AGGTCGGCCACCTCCTCGGGCTCGTCCTTCTTGGGCTCCTCCTTCTTGTGCTGCACCTTGTTCAA
CTGGAACGCCTTCGGCTTGATCACCTTTTTCGGCTCCGGCTTGGTTTCCTTTTCGGGCATGGTTC
CCTCCTTCTTCTGGAGAGCAGCGATCTTGACGTTGCCCTGCGCCAACAACGCGGCGCGGCGGCGC
TCCTGCAACTTCTTCTCCTCCTTCTGCTTCTTGGTGAGGAACTTGCCCTCGGCCTTCAACTGCTC
GTCGCGGGCCTTCTTGGCCGCCCGCTTGGCGGCCCGGGCGTCCTCCTTGTCCTGCTCCTCCTTGC
GCGCACGCTCCTCCTCCTCGCGGGCCGCGGCCTCCTCCTCCTCCTCCATCCGCCGCTGCTCCTCC
TCCATCTGCTTCTTGAGCTCCAACTGCTTCTTGAGCGCCGCCAAC
Found at i:18094 original size:15 final size:15
Alignment explanation
Indices: 18074--18104 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
18064 CCACCTCCTC
*
18074 GGGCTCGTCCTTCTT
1 GGGCTCCTCCTTCTT
18089 GGGCTCCTCCTTCTT
1 GGGCTCCTCCTTCTT
18104 G
1 G
18105 TGCTGCACCT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.00, C:0.35, G:0.26, T:0.39
Consensus pattern (15 bp):
GGGCTCCTCCTTCTT
Left flanking sequence: Indices 17574 -- 18073
AACAACCCGGGCACGTCGAACGTCTGCTTCTCGTACTTGGCCATCACCGCGGTCTTCTGCTTGAT
GGCGTCCATGGGGAAGTAGGTGGCACCGATCTGCTGGGTGATACCGCCGGCCTCGCCGCCCTGGA
CGTTGGTCTGGCGGATCTTGTCCAAAAGCTTGGTCTTACCCGTGTCGACATGGCCCAAAATACAG
CAAATGGGCGAGCGGAGGTCCTTGTCGGAGGCACCGCCCGACGCCTGGGTGCGCTTGCGGGCCTG
CTCCTCGAGCGCCGCCTTCTCCGCCGCCGCCTTCTCCACCGCGGCCTTGCGCTTGGCCTCCTCCT
GCGCCCGGAGCGCCGCCTCGGCCTCGGCTCGCTCGCGGGCCTTTTGCTCCTCCAACAGCTTCTCG
GCCTCCTCCTTCTTCTCGGCCTCCTCCTCGTCGTCGAGCGCCGTCTCCCAGTCGTCCACCACCGG
CTCGTCCTCGTCGGCAAGCGCCTCCCACAGGTCGGCCACCTCCTC
Right flanking sequence: Indices 18105 -- 18604
TGCTGCACCTTGTTCAACTGGAACGCCTTCGGCTTGATCACCTTTTTCGGCTCCGGCTTGGTTTC
CTTTTCGGGCATGGTTCCCTCCTTCTTCTGGAGAGCAGCGATCTTGACGTTGCCCTGCGCCAACA
ACGCGGCGCGGCGGCGCTCCTGCAACTTCTTCTCCTCCTTCTGCTTCTTGGTGAGGAACTTGCCC
TCGGCCTTCAACTGCTCGTCGCGGGCCTTCTTGGCCGCCCGCTTGGCGGCCCGGGCGTCCTCCTT
GTCCTGCTCCTCCTTGCGCGCACGCTCCTCCTCCTCGCGGGCCGCGGCCTCCTCCTCCTCCTCCA
TCCGCCGCTGCTCCTCCTCCATCTGCTTCTTGAGCTCCAACTGCTTCTTGAGCGCCGCCAACCCG
GCCGGGGCCTTCTTGCCCTTCTTCTTGGGCGCGGCCTTGGTCTCAGGCTCGGGGGTGTCCGCGTC
GTCCTTGGGCTCGGGGGTGTTCTTCGCCAGCGCCGCCTCGGCGTT
Found at i:18473 original size:18 final size:18
Alignment explanation
Indices: 18446--18482 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
18436 GCTGCTCCTC
*
18446 CTCCATCTGCTTCTTGAG
1 CTCCAACTGCTTCTTGAG
18464 CTCCAACTGCTTCTTGAG
1 CTCCAACTGCTTCTTGAG
18482 C
1 C
18483 GCCGCCAACC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.14, C:0.35, G:0.16, T:0.35
Consensus pattern (18 bp):
CTCCAACTGCTTCTTGAG
Left flanking sequence: Indices 17946 -- 18445
TCCTCCAACAGCTTCTCGGCCTCCTCCTTCTTCTCGGCCTCCTCCTCGTCGTCGAGCGCCGTCTC
CCAGTCGTCCACCACCGGCTCGTCCTCGTCGGCAAGCGCCTCCCACAGGTCGGCCACCTCCTCGG
GCTCGTCCTTCTTGGGCTCCTCCTTCTTGTGCTGCACCTTGTTCAACTGGAACGCCTTCGGCTTG
ATCACCTTTTTCGGCTCCGGCTTGGTTTCCTTTTCGGGCATGGTTCCCTCCTTCTTCTGGAGAGC
AGCGATCTTGACGTTGCCCTGCGCCAACAACGCGGCGCGGCGGCGCTCCTGCAACTTCTTCTCCT
CCTTCTGCTTCTTGGTGAGGAACTTGCCCTCGGCCTTCAACTGCTCGTCGCGGGCCTTCTTGGCC
GCCCGCTTGGCGGCCCGGGCGTCCTCCTTGTCCTGCTCCTCCTTGCGCGCACGCTCCTCCTCCTC
GCGGGCCGCGGCCTCCTCCTCCTCCTCCATCCGCCGCTGCTCCTC
Right flanking sequence: Indices 18483 -- 18982
GCCGCCAACCCGGCCGGGGCCTTCTTGCCCTTCTTCTTGGGCGCGGCCTTGGTCTCAGGCTCGGG
GGTGTCCGCGTCGTCCTTGGGCTCGGGGGTGTTCTTCGCCAGCGCCGCCTCGGCGTTCTTTTTGT
TGGTCTCCTTGATCGCCGCCTTTTTCTCGGCGTCCGCGGCCTTCTTCTTGGCCGCAGCCTCCTTC
TTGGCCTGCTTCTCGGCCTCCTTCTTCAATTTCTCCTTCTCCTTTTTCAGCAAGAGTTTCGGGGC
CTCGGTGTTTTTCTTTTCGTCCTTTTTTTGCTTGTTCTGCTTGATCAGCGCCAAAAAGTCGGCGG
GCTCGGCGTCCTCGGGCGCAGGCGTGCCCTCGGCGGACTCCGGCGCGGGCGACGCGGCCGTAAGC
TGCTCGCCCATGTCCTCGTCGTCCCAGAAATCGCCTCCGGCGGCTCCTTTCTTCAGTTTCTTACC
CATGGTTGGAGTGAGTGAAAAGTGAAGCTTTTTTTTCACCGATGC
Found at i:18667 original size:18 final size:18
Alignment explanation
Indices: 18646--18683 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
18636 TTCTCGGCGT
* *
18646 CCGCGGCCTTCTTCTTGG
1 CCGCAGCCTCCTTCTTGG
18664 CCGCAGCCTCCTTCTTGG
1 CCGCAGCCTCCTTCTTGG
18682 CC
1 CC
18684 TGCTTCTCGG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.03, C:0.45, G:0.24, T:0.29
Consensus pattern (18 bp):
CCGCAGCCTCCTTCTTGG
Left flanking sequence: Indices 18146 -- 18645
CTTTTTCGGCTCCGGCTTGGTTTCCTTTTCGGGCATGGTTCCCTCCTTCTTCTGGAGAGCAGCGA
TCTTGACGTTGCCCTGCGCCAACAACGCGGCGCGGCGGCGCTCCTGCAACTTCTTCTCCTCCTTC
TGCTTCTTGGTGAGGAACTTGCCCTCGGCCTTCAACTGCTCGTCGCGGGCCTTCTTGGCCGCCCG
CTTGGCGGCCCGGGCGTCCTCCTTGTCCTGCTCCTCCTTGCGCGCACGCTCCTCCTCCTCGCGGG
CCGCGGCCTCCTCCTCCTCCTCCATCCGCCGCTGCTCCTCCTCCATCTGCTTCTTGAGCTCCAAC
TGCTTCTTGAGCGCCGCCAACCCGGCCGGGGCCTTCTTGCCCTTCTTCTTGGGCGCGGCCTTGGT
CTCAGGCTCGGGGGTGTCCGCGTCGTCCTTGGGCTCGGGGGTGTTCTTCGCCAGCGCCGCCTCGG
CGTTCTTTTTGTTGGTCTCCTTGATCGCCGCCTTTTTCTCGGCGT
Right flanking sequence: Indices 18684 -- 19183
TGCTTCTCGGCCTCCTTCTTCAATTTCTCCTTCTCCTTTTTCAGCAAGAGTTTCGGGGCCTCGGT
GTTTTTCTTTTCGTCCTTTTTTTGCTTGTTCTGCTTGATCAGCGCCAAAAAGTCGGCGGGCTCGG
CGTCCTCGGGCGCAGGCGTGCCCTCGGCGGACTCCGGCGCGGGCGACGCGGCCGTAAGCTGCTCG
CCCATGTCCTCGTCGTCCCAGAAATCGCCTCCGGCGGCTCCTTTCTTCAGTTTCTTACCCATGGT
TGGAGTGAGTGAAAAGTGAAGCTTTTTTTTCACCGATGCGTGAGTGGGGAGAGAACGAAGGTGGT
GGGTGGGGGGTGGGTTAGAGAGGTGTAGGGTGTGTAGGGCGTGTAGGGCGGATGTTGGGCGGTGT
GGAGGGTGGTGTGGCGGGCCGGTGGTGGGCCTGGTTTATCTGGGAAGGGCCTGGTTCGTGGTTAC
CGGGCTATGGTGCCACTGATGGATCGGGCGGGGCACACAACCAGA
Found at i:18684 original size:12 final size:12
Alignment explanation
Indices: 18669--18703 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
18659 CTTGGCCGCA
18669 GCCTCCTTCTTG
1 GCCTCCTTCTTG
* *
18681 GCCTGCTTCTCG
1 GCCTCCTTCTTG
18693 GCCTCCTTCTT
1 GCCTCCTTCTT
18704 CAATTTCTCC
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.00, C:0.43, G:0.17, T:0.40
Consensus pattern (12 bp):
GCCTCCTTCTTG
Left flanking sequence: Indices 18169 -- 18668
CCTTTTCGGGCATGGTTCCCTCCTTCTTCTGGAGAGCAGCGATCTTGACGTTGCCCTGCGCCAAC
AACGCGGCGCGGCGGCGCTCCTGCAACTTCTTCTCCTCCTTCTGCTTCTTGGTGAGGAACTTGCC
CTCGGCCTTCAACTGCTCGTCGCGGGCCTTCTTGGCCGCCCGCTTGGCGGCCCGGGCGTCCTCCT
TGTCCTGCTCCTCCTTGCGCGCACGCTCCTCCTCCTCGCGGGCCGCGGCCTCCTCCTCCTCCTCC
ATCCGCCGCTGCTCCTCCTCCATCTGCTTCTTGAGCTCCAACTGCTTCTTGAGCGCCGCCAACCC
GGCCGGGGCCTTCTTGCCCTTCTTCTTGGGCGCGGCCTTGGTCTCAGGCTCGGGGGTGTCCGCGT
CGTCCTTGGGCTCGGGGGTGTTCTTCGCCAGCGCCGCCTCGGCGTTCTTTTTGTTGGTCTCCTTG
ATCGCCGCCTTTTTCTCGGCGTCCGCGGCCTTCTTCTTGGCCGCA
Right flanking sequence: Indices 18704 -- 19203
CAATTTCTCCTTCTCCTTTTTCAGCAAGAGTTTCGGGGCCTCGGTGTTTTTCTTTTCGTCCTTTT
TTTGCTTGTTCTGCTTGATCAGCGCCAAAAAGTCGGCGGGCTCGGCGTCCTCGGGCGCAGGCGTG
CCCTCGGCGGACTCCGGCGCGGGCGACGCGGCCGTAAGCTGCTCGCCCATGTCCTCGTCGTCCCA
GAAATCGCCTCCGGCGGCTCCTTTCTTCAGTTTCTTACCCATGGTTGGAGTGAGTGAAAAGTGAA
GCTTTTTTTTCACCGATGCGTGAGTGGGGAGAGAACGAAGGTGGTGGGTGGGGGGTGGGTTAGAG
AGGTGTAGGGTGTGTAGGGCGTGTAGGGCGGATGTTGGGCGGTGTGGAGGGTGGTGTGGCGGGCC
GGTGGTGGGCCTGGTTTATCTGGGAAGGGCCTGGTTCGTGGTTACCGGGCTATGGTGCCACTGAT
GGATCGGGCGGGGCACACAACCAGAGCAAGATGGAAGAGGGTGGA
Found at i:19233 original size:11 final size:11
Alignment explanation
Indices: 19210--19244 Score: 54
Period size: 11 Copynumber: 3.3 Consensus size: 11
19200 TGGAAGTGGT
19210 GAGGAGG-ATA
1 GAGGAGGAATA
19220 GAGGAGGAATA
1 GAGGAGGAATA
*
19231 GAGGAGGAAAA
1 GAGGAGGAATA
19242 GAG
1 GAG
19245 AAGGTGGGTG
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
10 7 0.30
11 16 0.70
ACGTcount: A:0.46, C:0.00, G:0.49, T:0.06
Consensus pattern (11 bp):
GAGGAGGAATA
Left flanking sequence: Indices 18710 -- 19209
CTCCTTCTCCTTTTTCAGCAAGAGTTTCGGGGCCTCGGTGTTTTTCTTTTCGTCCTTTTTTTGCT
TGTTCTGCTTGATCAGCGCCAAAAAGTCGGCGGGCTCGGCGTCCTCGGGCGCAGGCGTGCCCTCG
GCGGACTCCGGCGCGGGCGACGCGGCCGTAAGCTGCTCGCCCATGTCCTCGTCGTCCCAGAAATC
GCCTCCGGCGGCTCCTTTCTTCAGTTTCTTACCCATGGTTGGAGTGAGTGAAAAGTGAAGCTTTT
TTTTCACCGATGCGTGAGTGGGGAGAGAACGAAGGTGGTGGGTGGGGGGTGGGTTAGAGAGGTGT
AGGGTGTGTAGGGCGTGTAGGGCGGATGTTGGGCGGTGTGGAGGGTGGTGTGGCGGGCCGGTGGT
GGGCCTGGTTTATCTGGGAAGGGCCTGGTTCGTGGTTACCGGGCTATGGTGCCACTGATGGATCG
GGCGGGGCACACAACCAGAGCAAGATGGAAGAGGGTGGAAGTGGT
Right flanking sequence: Indices 19245 -- 19744
AAGGTGGGTGTGGTACGATGGACTGGTAGTGGTGGGTGGCTGGGTACGAGATAGAGTGGTTAGTG
GTAAGAAGGGGGTGTTCAATTGCGGTGTGACCCAGGGTGGCGACTGACGCCACCGCGATGGTTTC
AGGGTTAGGTAAGGAATTAGCGGGGTAGAAAGTGGGTGTTTGTGGGTAGAGTGGGAAGAACATTG
GGAGACAGGTAGAGAACAGAAGAACAGGAGAACAGGTAGAACAGGAACAGTTATAACAGGGGAAC
AGGTAGAGAATAGATGGAGAACAGGTGGAGAACAGATGGGTGGGAATTGATGGAAAAACCCCAGA
ATCTAGATAGAACCAAGGCTGTGTTCTTGGTAGTAGACCACCTATGAAATTTCCAGAGAATCAGG
GCAGTCTCAACTCCAAGCCGGCTCATTGAGAGCCTGGGCACAACACCCACCAACTTGCCCTCCTA
AACACTCGCTTTCAAACACCCACCGATGGCTTCAAACCCCGAAAA
Found at i:19482 original size:9 final size:8
Alignment explanation
Indices: 19451--19485 Score: 52
Period size: 8 Copynumber: 4.2 Consensus size: 8
19441 GAGACAGGTA
19451 GAGAACAG
1 GAGAACAG
*
19459 AAGAACAG
1 GAGAACAG
19467 GAGAACAG
1 GAGAACAG
19475 GTAGAACAG
1 G-AGAACAG
19484 GA
1 GA
19486 ACAGTTATAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
8 16 0.67
9 8 0.33
ACGTcount: A:0.51, C:0.11, G:0.34, T:0.03
Consensus pattern (8 bp):
GAGAACAG
Left flanking sequence: Indices 18951 -- 19450
AGTGAAAAGTGAAGCTTTTTTTTCACCGATGCGTGAGTGGGGAGAGAACGAAGGTGGTGGGTGGG
GGGTGGGTTAGAGAGGTGTAGGGTGTGTAGGGCGTGTAGGGCGGATGTTGGGCGGTGTGGAGGGT
GGTGTGGCGGGCCGGTGGTGGGCCTGGTTTATCTGGGAAGGGCCTGGTTCGTGGTTACCGGGCTA
TGGTGCCACTGATGGATCGGGCGGGGCACACAACCAGAGCAAGATGGAAGAGGGTGGAAGTGGTG
AGGAGGATAGAGGAGGAATAGAGGAGGAAAAGAGAAGGTGGGTGTGGTACGATGGACTGGTAGTG
GTGGGTGGCTGGGTACGAGATAGAGTGGTTAGTGGTAAGAAGGGGGTGTTCAATTGCGGTGTGAC
CCAGGGTGGCGACTGACGCCACCGCGATGGTTTCAGGGTTAGGTAAGGAATTAGCGGGGTAGAAA
GTGGGTGTTTGTGGGTAGAGTGGGAAGAACATTGGGAGACAGGTA
Right flanking sequence: Indices 19486 -- 19985
ACAGTTATAACAGGGGAACAGGTAGAGAATAGATGGAGAACAGGTGGAGAACAGATGGGTGGGAA
TTGATGGAAAAACCCCAGAATCTAGATAGAACCAAGGCTGTGTTCTTGGTAGTAGACCACCTATG
AAATTTCCAGAGAATCAGGGCAGTCTCAACTCCAAGCCGGCTCATTGAGAGCCTGGGCACAACAC
CCACCAACTTGCCCTCCTAAACACTCGCTTTCAAACACCCACCGATGGCTTCAAACCCCGAAAAC
CAACGCACCCGACCCGATCCAATAGCCATCTCTCCATCACATCCACCGCCAGTAGGAATCTCGGT
GTGCTCGCACTAGGCTCCGGTGCCGCACTGTGCTCTGCACGGCTGACACGACCGCCTTCCTATTT
TAGAAGCAGGCTCCACGCCAGGTAGCCACGCTAGCGCGTAACACCCTTACGACGACTCCCCAAGG
ACTCTCACCCTGCCAACACACTCTCCACCCCTCTCCCCCCCTCTC
Found at i:19482 original size:17 final size:17
Alignment explanation
Indices: 19451--19511 Score: 65
Period size: 17 Copynumber: 3.8 Consensus size: 17
19441 GAGACAGGTA
*
19451 GAGAACA-GAAGAACAG
1 GAGAACAGGTAGAACAG
19467 GAGAACAGGTAGAACA-
1 GAGAACAGGTAGAACAG
* *
19483 G-GAACAGTTATAACAG
1 GAGAACAGGTAGAACAG
*
19499 GGGAACAGGTAGA
1 GAGAACAGGTAGA
19512 GAATAGATGG
Statistics
Matches: 37, Mismatches: 5, Indels: 5
0.79 0.11 0.11
Matches are distributed among these distances:
15 12 0.32
16 9 0.24
17 16 0.43
ACGTcount: A:0.48, C:0.11, G:0.33, T:0.08
Consensus pattern (17 bp):
GAGAACAGGTAGAACAG
Left flanking sequence: Indices 18951 -- 19450
AGTGAAAAGTGAAGCTTTTTTTTCACCGATGCGTGAGTGGGGAGAGAACGAAGGTGGTGGGTGGG
GGGTGGGTTAGAGAGGTGTAGGGTGTGTAGGGCGTGTAGGGCGGATGTTGGGCGGTGTGGAGGGT
GGTGTGGCGGGCCGGTGGTGGGCCTGGTTTATCTGGGAAGGGCCTGGTTCGTGGTTACCGGGCTA
TGGTGCCACTGATGGATCGGGCGGGGCACACAACCAGAGCAAGATGGAAGAGGGTGGAAGTGGTG
AGGAGGATAGAGGAGGAATAGAGGAGGAAAAGAGAAGGTGGGTGTGGTACGATGGACTGGTAGTG
GTGGGTGGCTGGGTACGAGATAGAGTGGTTAGTGGTAAGAAGGGGGTGTTCAATTGCGGTGTGAC
CCAGGGTGGCGACTGACGCCACCGCGATGGTTTCAGGGTTAGGTAAGGAATTAGCGGGGTAGAAA
GTGGGTGTTTGTGGGTAGAGTGGGAAGAACATTGGGAGACAGGTA
Right flanking sequence: Indices 19512 -- 20011
GAATAGATGGAGAACAGGTGGAGAACAGATGGGTGGGAATTGATGGAAAAACCCCAGAATCTAGA
TAGAACCAAGGCTGTGTTCTTGGTAGTAGACCACCTATGAAATTTCCAGAGAATCAGGGCAGTCT
CAACTCCAAGCCGGCTCATTGAGAGCCTGGGCACAACACCCACCAACTTGCCCTCCTAAACACTC
GCTTTCAAACACCCACCGATGGCTTCAAACCCCGAAAACCAACGCACCCGACCCGATCCAATAGC
CATCTCTCCATCACATCCACCGCCAGTAGGAATCTCGGTGTGCTCGCACTAGGCTCCGGTGCCGC
ACTGTGCTCTGCACGGCTGACACGACCGCCTTCCTATTTTAGAAGCAGGCTCCACGCCAGGTAGC
CACGCTAGCGCGTAACACCCTTACGACGACTCCCCAAGGACTCTCACCCTGCCAACACACTCTCC
ACCCCTCTCCCCCCCTCTCCACACCCGACAGTATCCCCACAAACC
Found at i:19529 original size:22 final size:22
Alignment explanation
Indices: 19501--19543 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
19491 TATAACAGGG
*
19501 GAACAGGTAGAGAATAGATGGA
1 GAACAGGTAGAGAACAGATGGA
*
19523 GAACAGGTGGAGAACAGATGG
1 GAACAGGTAGAGAACAGATGG
19544 GTGGGAATTG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.42, C:0.07, G:0.40, T:0.12
Consensus pattern (22 bp):
GAACAGGTAGAGAACAGATGGA
Left flanking sequence: Indices 19001 -- 19500
AAGGTGGTGGGTGGGGGGTGGGTTAGAGAGGTGTAGGGTGTGTAGGGCGTGTAGGGCGGATGTTG
GGCGGTGTGGAGGGTGGTGTGGCGGGCCGGTGGTGGGCCTGGTTTATCTGGGAAGGGCCTGGTTC
GTGGTTACCGGGCTATGGTGCCACTGATGGATCGGGCGGGGCACACAACCAGAGCAAGATGGAAG
AGGGTGGAAGTGGTGAGGAGGATAGAGGAGGAATAGAGGAGGAAAAGAGAAGGTGGGTGTGGTAC
GATGGACTGGTAGTGGTGGGTGGCTGGGTACGAGATAGAGTGGTTAGTGGTAAGAAGGGGGTGTT
CAATTGCGGTGTGACCCAGGGTGGCGACTGACGCCACCGCGATGGTTTCAGGGTTAGGTAAGGAA
TTAGCGGGGTAGAAAGTGGGTGTTTGTGGGTAGAGTGGGAAGAACATTGGGAGACAGGTAGAGAA
CAGAAGAACAGGAGAACAGGTAGAACAGGAACAGTTATAACAGGG
Right flanking sequence: Indices 19544 -- 20043
GTGGGAATTGATGGAAAAACCCCAGAATCTAGATAGAACCAAGGCTGTGTTCTTGGTAGTAGACC
ACCTATGAAATTTCCAGAGAATCAGGGCAGTCTCAACTCCAAGCCGGCTCATTGAGAGCCTGGGC
ACAACACCCACCAACTTGCCCTCCTAAACACTCGCTTTCAAACACCCACCGATGGCTTCAAACCC
CGAAAACCAACGCACCCGACCCGATCCAATAGCCATCTCTCCATCACATCCACCGCCAGTAGGAA
TCTCGGTGTGCTCGCACTAGGCTCCGGTGCCGCACTGTGCTCTGCACGGCTGACACGACCGCCTT
CCTATTTTAGAAGCAGGCTCCACGCCAGGTAGCCACGCTAGCGCGTAACACCCTTACGACGACTC
CCCAAGGACTCTCACCCTGCCAACACACTCTCCACCCCTCTCCCCCCCTCTCCACACCCGACAGT
ATCCCCACAAACCCTTCACCACCGCTCTCTTGTAACCCAGCCAGC
Found at i:19533 original size:11 final size:11
Alignment explanation
Indices: 19501--19539 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
19491 TATAACAGGG
*
19501 GAACAGGTAGA
1 GAACAGGTGGA
* *
19512 GAATAGATGGA
1 GAACAGGTGGA
19523 GAACAGGTGGA
1 GAACAGGTGGA
19534 GAACAG
1 GAACAG
19540 ATGGGTGGGA
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
11 23 1.00
ACGTcount: A:0.44, C:0.08, G:0.38, T:0.10
Consensus pattern (11 bp):
GAACAGGTGGA
Left flanking sequence: Indices 19001 -- 19500
AAGGTGGTGGGTGGGGGGTGGGTTAGAGAGGTGTAGGGTGTGTAGGGCGTGTAGGGCGGATGTTG
GGCGGTGTGGAGGGTGGTGTGGCGGGCCGGTGGTGGGCCTGGTTTATCTGGGAAGGGCCTGGTTC
GTGGTTACCGGGCTATGGTGCCACTGATGGATCGGGCGGGGCACACAACCAGAGCAAGATGGAAG
AGGGTGGAAGTGGTGAGGAGGATAGAGGAGGAATAGAGGAGGAAAAGAGAAGGTGGGTGTGGTAC
GATGGACTGGTAGTGGTGGGTGGCTGGGTACGAGATAGAGTGGTTAGTGGTAAGAAGGGGGTGTT
CAATTGCGGTGTGACCCAGGGTGGCGACTGACGCCACCGCGATGGTTTCAGGGTTAGGTAAGGAA
TTAGCGGGGTAGAAAGTGGGTGTTTGTGGGTAGAGTGGGAAGAACATTGGGAGACAGGTAGAGAA
CAGAAGAACAGGAGAACAGGTAGAACAGGAACAGTTATAACAGGG
Right flanking sequence: Indices 19540 -- 20039
ATGGGTGGGAATTGATGGAAAAACCCCAGAATCTAGATAGAACCAAGGCTGTGTTCTTGGTAGTA
GACCACCTATGAAATTTCCAGAGAATCAGGGCAGTCTCAACTCCAAGCCGGCTCATTGAGAGCCT
GGGCACAACACCCACCAACTTGCCCTCCTAAACACTCGCTTTCAAACACCCACCGATGGCTTCAA
ACCCCGAAAACCAACGCACCCGACCCGATCCAATAGCCATCTCTCCATCACATCCACCGCCAGTA
GGAATCTCGGTGTGCTCGCACTAGGCTCCGGTGCCGCACTGTGCTCTGCACGGCTGACACGACCG
CCTTCCTATTTTAGAAGCAGGCTCCACGCCAGGTAGCCACGCTAGCGCGTAACACCCTTACGACG
ACTCCCCAAGGACTCTCACCCTGCCAACACACTCTCCACCCCTCTCCCCCCCTCTCCACACCCGA
CAGTATCCCCACAAACCCTTCACCACCGCTCTCTTGTAACCCAGC
Found at i:21552 original size:27 final size:27
Alignment explanation
Indices: 21522--21582 Score: 68
Period size: 27 Copynumber: 2.3 Consensus size: 27
21512 AGAGGTGAAA
*
21522 TGGTTAGAGGTCTCCGAGGTCACATGG
1 TGGTCAGAGGTCTCCGAGGTCACATGG
* * * **
21549 TGGTCGGTGGTCTTCGAGGTTGCATGG
1 TGGTCAGAGGTCTCCGAGGTCACATGG
21576 TGGTCAG
1 TGGTCAG
21583 TAGTCTCGGG
Statistics
Matches: 27, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.13, C:0.16, G:0.41, T:0.30
Consensus pattern (27 bp):
TGGTCAGAGGTCTCCGAGGTCACATGG
Left flanking sequence: Indices 21022 -- 21521
TATTCGGACCGTCTTTGGGTTTGGACGCTGGCAAGGGGTTTGGCGAGGGTTCAAGGTGACCAAAA
ACCAGATCACCGATCTGGTGACTCGCTCGCGTTTCAAACTGACTCTCGTGGCCCTCGTCGTCAGT
CCCATTATCGCTCTGGCCACTCAAACCGTGACTGCGGTTATTATCTCCCTCATGAAGGTCCAGGG
GGTAGCCATTGACGAGTTGACTGCCGCCGTGGCCTCGCATTTGGTGTTTGTTCTTCTCCAGTGTG
TTCCTCTCTTCGTTATCTACGCATCGTGGACTGTCCCGAACCTGGGGTTGGCAGAATTGAAGAAG
ACAGAGGAGAAAAAGGCTTAGATTACATTAGAACGCATAGCTGTGGGTAACAAGGTGTATATTCA
AATTAAATAGTAACGGCTAACGCAATCACACAGTCACGGTCACGGTCTCAGCCGGGAGTCTAACA
GTGTAGGTGGTGTCACCGAAACAAGTCATCTCAGAAGAGGTGAAA
Right flanking sequence: Indices 21583 -- 22082
TAGTCTCGGGGTGGTAGTTAGTCGACAGGGTGTCAGGGTGGTAGTTAGTTGACAGGGTGTCAGGG
TGGTAGTTAGTTGACAGGGTGTCAGGGTGGTAGTTAGTTGACAGAGTGTCAGGGTGGTAGTTAGT
TGACAGGGTGTCAGGGTGAGGCGAGGGAACATCAACCAGACGCTTGCAGTGACCACACTTGGGAT
CCACAGCAGCCTGCGACGGCACAGCACCTCTGTACTCGATGGCATTGTGAGGGGAGCTGCCGCTG
AACTCACGAGTGCCGAGGTAGAACTTGGAGAAGTCGTACCCAAGACCAATGTCGTATTGGGCGGT
ACCCAACTCAGTCTCAAGGGTAAGGATAGAGCCGGTGTAGGTGTACCGGTTGATCGTTTTCAAAG
AAGCGATGGCCATGCCCTCACCGTAACCACGCACAGTAATGAAGTGGTGGTAGATGTTGGGAGCA
CCAGTCATGATGAAACCAGTGGACCCAGGAGCAAACTGAACGGTG
Found at i:21629 original size:27 final size:27
Alignment explanation
Indices: 21591--21730 Score: 262
Period size: 27 Copynumber: 5.2 Consensus size: 27
21581 AGTAGTCTCG
*
21591 GGGTGGTAGTTAGTCGACAGGGTGTCA
1 GGGTGGTAGTTAGTTGACAGGGTGTCA
21618 GGGTGGTAGTTAGTTGACAGGGTGTCA
1 GGGTGGTAGTTAGTTGACAGGGTGTCA
21645 GGGTGGTAGTTAGTTGACAGGGTGTCA
1 GGGTGGTAGTTAGTTGACAGGGTGTCA
*
21672 GGGTGGTAGTTAGTTGACAGAGTGTCA
1 GGGTGGTAGTTAGTTGACAGGGTGTCA
21699 GGGTGGTAGTTAGTTGACAGGGTGTCA
1 GGGTGGTAGTTAGTTGACAGGGTGTCA
21726 GGGTG
1 GGGTG
21731 AGGCGAGGGA
Statistics
Matches: 110, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 110 1.00
ACGTcount: A:0.19, C:0.08, G:0.45, T:0.29
Consensus pattern (27 bp):
GGGTGGTAGTTAGTTGACAGGGTGTCA
Left flanking sequence: Indices 21091 -- 21590
GATCACCGATCTGGTGACTCGCTCGCGTTTCAAACTGACTCTCGTGGCCCTCGTCGTCAGTCCCA
TTATCGCTCTGGCCACTCAAACCGTGACTGCGGTTATTATCTCCCTCATGAAGGTCCAGGGGGTA
GCCATTGACGAGTTGACTGCCGCCGTGGCCTCGCATTTGGTGTTTGTTCTTCTCCAGTGTGTTCC
TCTCTTCGTTATCTACGCATCGTGGACTGTCCCGAACCTGGGGTTGGCAGAATTGAAGAAGACAG
AGGAGAAAAAGGCTTAGATTACATTAGAACGCATAGCTGTGGGTAACAAGGTGTATATTCAAATT
AAATAGTAACGGCTAACGCAATCACACAGTCACGGTCACGGTCTCAGCCGGGAGTCTAACAGTGT
AGGTGGTGTCACCGAAACAAGTCATCTCAGAAGAGGTGAAATGGTTAGAGGTCTCCGAGGTCACA
TGGTGGTCGGTGGTCTTCGAGGTTGCATGGTGGTCAGTAGTCTCG
Right flanking sequence: Indices 21731 -- 22230
AGGCGAGGGAACATCAACCAGACGCTTGCAGTGACCACACTTGGGATCCACAGCAGCCTGCGACG
GCACAGCACCTCTGTACTCGATGGCATTGTGAGGGGAGCTGCCGCTGAACTCACGAGTGCCGAGG
TAGAACTTGGAGAAGTCGTACCCAAGACCAATGTCGTATTGGGCGGTACCCAACTCAGTCTCAAG
GGTAAGGATAGAGCCGGTGTAGGTGTACCGGTTGATCGTTTTCAAAGAAGCGATGGCCATGCCCT
CACCGTAACCACGCACAGTAATGAAGTGGTGGTAGATGTTGGGAGCACCAGTCATGATGAAACCA
GTGGACCCAGGAGCAAACTGAACGGTGTGTTCAGACAACTTGACAGGGGAGAAGTCCACCACCGA
GTCATCGTAGATGTGGACACAACCAGGCCCAATGAGATCAGTTTGCACCGGGTAGGCGTAGTTGA
AAAGACAGATGTCTCCGTCGTTGTGAATGACACCCACATTAGCAC
Found at i:25837 original size:11 final size:11
Alignment explanation
Indices: 25821--25851 Score: 62
Period size: 11 Copynumber: 2.8 Consensus size: 11
25811 TTTAATGGCG
25821 ACACGATGCAT
1 ACACGATGCAT
25832 ACACGATGCAT
1 ACACGATGCAT
25843 ACACGATGC
1 ACACGATGC
25852 CGAACCCCAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.35, C:0.29, G:0.19, T:0.16
Consensus pattern (11 bp):
ACACGATGCAT
Left flanking sequence: Indices 25321 -- 25820
ACATGTACTCATTCTTCCAAAAGCGGCGTTGGTTTGGGCCAGACACTTGAATGCGAATCCTATGT
GGTCTGGGATGTTGCCAAAGAAGGTCGGTAAGCCTTCACTCTTGGAATGCCATTAGTGTACAAAA
TGTGATCAGTCTACACGCATTTGAGAACGAAGAGGGTTTTCCAACAAACCTTACAAAACTTGGCA
AGGGAATATGGCGCAATTTGTTATGCGTCTATCTTGGGGTCAACAACTTCAAGCTGAAATTGATT
AAATCTAGTTATTCTTGTGCATCTAAGGAGATCTGACCAACCGCGCGAATGCGTCCAATCTCGCA
TAATTTTGAGACACTTGTACTTCTAGTTATATAGTGCTCCTTGACACTGCTAAAGTTAGCAACAT
TTCGCAAGTCTACAAAAGGGCTGTTCAAAAAGAAGAAGCGTTGTAAATATTGTGTTCTGGGATGA
ATTTGAAGTAAGGGACTTGAATTCGTGGCTTTACTTTTAATGGCG
Right flanking sequence: Indices 25852 -- 26351
CGAACCCCATATGCGGGGGGGACCCCCGACGCCCGTGTAGTTTTCATAAGTGCATCAAAAACAAA
CAGAACAAGGCAAAAAAACAACGTGATCTACCCTCCAATACATCAGACAGGCTTTGGTTGTATTC
AACGGAGGACTTCTTTAGGGAACTGATGCAACCATCGGTGAAATTTCGCCGGAGTAGTGTTGATC
AAAACCCCGATGATCAGCTTATCGAGAGGTAGCGAAAACGCACCCCATACAGAACAAAAAAATCG
TTAAGTCCCGGCTAGTCTTGGCTCAGGTGACACAACCGTGGTGTGAAAACCTCCAGAAAATGGAG
GCCATCGCCCTTTCAACCACTAAGCGAGAGCAGAAGTCTCAAGCCTTTGATTATTTGGTAAAATC
TCTTCTGTACCACGAGTTTATGAAACAGTTTCTGCGAAATAGCCGCCCATATTCAATGTATCAAG
TCCTCGATATGTATGTCTGCGAAGCACTCAAGTGGAAAAAAGTCT
Found at i:28562 original size:72 final size:66
Alignment explanation
Indices: 28204--29477 Score: 553
Period size: 72 Copynumber: 18.1 Consensus size: 66
28194 AGATGGTGGG
* * * * * * * *
28204 AGAACCAGTAGCGTCGGTGTTGTCAGAAGTGACAGAACCAGTAGCGTCAGTCTCGTCAGAAGTGA
1 AGAACCAGTAGCGTCAGTCTCGTCAGAGGTGACGGAACCAGTAGCATCGGTCTCATCAGAAGTGA
28269 C
66 C
* * * * * * * *
28270 GGAACCGGTAGCGTCAGTCTCGTTAGAGGTCGCAGCAGAACCGGTAGCGTCAGTCTCGTCAGAAG
1 AGAACCAGTAGCGTCAGTCTCGTCAGAGGT-G-A-CGGAACCAGTAGCATCGGTCTCATCAGAAG
*
28335 TGGC
63 TGAC
* * * * * * * * **
28339 AGAGCCGGACAAGGTCGCGTCAGTCTCGTTAGAGGTGACAGAACCAGTTGCGTCAGTCTCGTTGG
1 AGA-----ACCA-GTAGCGTCAGTCTCGTCAGAGGTGACGGAACCAGTAGCATCGGTCTCATCAG
*
28404 AGGTGAC
60 AAGTGAC
* *
28411 AGAACCAGTAGAGTCAGTCTCGTCAGAAGTGACAGG-ACCAGTAGCATCGGTCTCATCAGAAGTG
1 AGAACCAGTAGCGTCAGTCTCGTCAGAGGTGAC-GGAACCAGTAGCATCGGTCTCATCAGAAGTG
28475 AC
65 AC
* * ** * *
28477 AGAACCAGTAGCGTCAGTCTTGTCAGAGGTGACGGAACCGGATACGGTTGCGGTCTCGTCAGAGG
1 AGAACCAGTAGCGTCAGTCTCGTCAGAGGTGACGGAACCAG-TA-GCAT-CGGTCTCATCAGAAG
28542 TCGCAGC
63 T-G-A-C
** * * * *
28549 AGAACCAGTAGCGTCAGTCTCGTTGGAGGTGACAGAACCAGTCGCGTCGGTCTCGTCAGAAGTGA
1 AGAACCAGTAGCGTCAGTCTCGTCAGAGGTGACGGAACCAGTAGCATCGGTCTCATCAGAAGTGA
28614 C
66 C
* * * * * *
28615 AGAACCGGACACGGACACGTCAGTCTCGTTAGAGGTGACAGAACCAGTAGCACCGGTCTCGTCAG
1 AGAA-C---CA-GTA-GCGTCAGTCTCGTCAGAGGTGACGGAACCAGTAGCATCGGTCTCATCAG
28680 AAGTGAC
60 AAGTGAC
* * * * * *
28687 AGAACCGGATACGGTAGCGTCAGTCTCGTTAGAGGTGACAGAACCAGTAGCGTCAGTCTCGTTAG
1 AGAACC----A--GTAGCGTCAGTCTCGTCAGAGGTGACGGAACCAGTAGCATCGGTCTCATCAG
*
28752 AGGTGAC
60 AAGTGAC
* * * * * ** *
28759 AGACCCAGTAGCATCAGTCTCGTTAGAGGTGACGGAACCAGTAGCGTCAGTCTTGTCAGAGGTGA
1 AGAACCAGTAGCGTCAGTCTCGTCAGAGGTGACGGAACCAGTAGCATCGGTCTCATCAGAAGTGA
28824 C
66 C
** * * * * * * *
28825 AGAACCAGCCGAC-TCGGTCTCGTTAGAGGTCGCAGCAGAACCGGTAGCGTCAGTCTCGTCAGAA
1 AGAACCAGTAG-CGTCAGTCTCGTCAGAGGT-G-A-CGGAACCAGTAGCATCGGTCTCATCAGAA
* *
28889 GAGGC
62 GTGAC
* * * * * * * **
28894 AGAACCGGACACGGTCAAC-TCAGTCTCGTTAGAGGTGACAGACCCAGTAGCGTCAGTCTCGTTG
1 AGAA-C---CA--GT-AGCGTCAGTCTCGTCAGAGGTGACGGAACCAGTAGCATCGGTCTCATCA
*
28958 GAGGTGAC
59 GAAGTGAC
* * * * * * * * *
28966 AGAACC-GGACACGTCGGTCTCGTCAGAAGTGACAGAACCGGATACGGTAGCGTCAGTCTCGTTA
1 AGAACCAGTA-GCGTCAGTCTCGTCAGAGGTGACGGAACC----A--GTAGCATCGGTCTCATCA
*
29030 GAGGTGAC
59 GAAGTGAC
* * * * * * * * *
29038 AGAACCAGTCGCATCGGTCTCGTCAGAAGTGACAGAACCGGATACGGTAGCGTCAGTCTCGTTAG
1 AGAACCAGTAGCGTCAGTCTCGTCAGAGGTGACGGAACC----A--GTAGCATCGGTCTCATCAG
29103 AAGTGAC
60 AAGTGAC
* * * *
29110 AGAACCGGATACGGTAGCGTCAGTCTCGTTAGAGGTGACAGAACCAGTCGCATCGGTCTCGTCAG
1 AGAACC----A--GTAGCGTCAGTCTCGTCAGAGGTGACGGAACCAGTAGCATCGGTCTCATCAG
29175 AAGTGAC
60 AAGTGAC
* * * *
29182 AGAACCGGACACGGTCA-CGTCAGTCTCGTCAGAAGTGACAGAACCGGACACGGTAGCGTCAGTC
1 AGAA-C---CA--GT-AGCGTCAGTCTCGTCAGAGGTGACGGAA-C---CA--GTAGCATCGGTC
* * *
29246 TCGTTAGAGGTGAC
53 TCATCAGAAGTGAC
* * * *
29260 AGAACCAGTAGCGTCAGTCTCGTTAGAGGTGACAGACCCAGTAGCATCGGTCTCGTCAGAAGTGA
1 AGAACCAGTAGCGTCAGTCTCGTCAGAGGTGACGGAACCAGTAGCATCGGTCTCATCAGAAGTGA
29325 C
66 C
* * * * *
29326 AGAACCGGACACGGTCA-CGTCAGTCTCGTCAGAAGTGACAGAACCGGACACGGTCGCGTCAGTC
1 AGAA-C---CA--GT-AGCGTCAGTCTCGTCAGAGGTGACGGAA-C---CA--GTAGCATCGGTC
* * *
29390 TCGTTAGAGGTGAC
53 TCATCAGAAGTGAC
* * * * ** *
29404 AGAACCAGTAGCATCAGTCTCGTTAGAGGTGACGGAACCAGTAGCGTCAGTCTTGTCAGAGGTGA
1 AGAACCAGTAGCGTCAGTCTCGTCAGAGGTGACGGAACCAGTAGCATCGGTCTCATCAGAAGTGA
29469 C
66 C
29470 AGAACCAG
1 AGAACCAG
29478 CCGACTCGGT
Statistics
Matches: 990, Mismatches: 138, Indels: 160
0.77 0.11 0.12
Matches are distributed among these distances:
64 1 0.00
65 5 0.01
66 265 0.27
67 12 0.01
68 12 0.01
69 95 0.10
70 9 0.01
71 10 0.01
72 435 0.44
73 12 0.01
74 9 0.01
75 40 0.04
76 6 0.01
77 2 0.00
78 77 0.08
ACGTcount: A:0.26, C:0.24, G:0.31, T:0.19
Consensus pattern (66 bp):
AGAACCAGTAGCGTCAGTCTCGTCAGAGGTGACGGAACCAGTAGCATCGGTCTCATCAGAAGTGA
C
Left flanking sequence: Indices 27704 -- 28203
GCATATCGTGTGACTTGCGAAACAACGCACTCTACCTTGAAAAAAGTAGTAAGCTCTCTCAATAT
CTTGGCCAACTTGAGTGGCGAGTTCTCTCATCATACAATAAGGATTGGCTATCAAGTAACGAAGG
TGTTTGTATTTAATGAAATAACCGAAATGATGTTCTTGTGATATATGACTGGCACGAAATGAAGG
GGGTGTTGTTAAACGTAGACAGTTACTGTGACGGCCGGAGCAGTCACGGTAGCGCTGGCGTGGAT
GTCGCAGGTGGGCCGGGTGTCAGAAGGAAGCGGCGACCACATACTTCCCAGAGAGGACTCAGTAG
TCCGATCAGTGGAGGTGGGCCCGGGTAAATTAGGATCAGTCTCGTTAGAGGTGGTCGGAGTGGGA
GTGGTAGTCTCAGTTTCGTCAGAGGTAGTAGGCTCCGATACATTCGAAGCAGTCTCAGTGGATGT
GTTCGTAACGGAGGCGGTAGCGTCGGTCTCGTTAGAGATGGTGGG
Right flanking sequence: Indices 29478 -- 29977
CCGACTCGGTCTCGTTAGAGGTCGCAGCAGAACCGGTAGCGTCAGTCTCGTCAGAAGAGGCAGAA
CCGGACACGGTTTCAGTTTCGTTGGAGACGGTCGTAGCAGAACCGGACACGGTCGACTCAGTCTC
ATCAGTGGTGGTAGACACAGACTCGTCGGACGTAATCAGGATGAGAGTGGTGGTCTCGGACCCGG
TCAGAGTCGTCTCGCTCTCGCTTGAGAGGGTAAAACCAGACTCGTCGGAGGTAATCAGAATGAGC
GTGGTAGTCTCAGTACCGTCAGAGGTGATCTGTACAGAGCTCGATTCAGTCTCTCCCGAGATTAT
CGACTCGGACAAGGTGGATCCAGTTTCAGTCTGCTTCCCTGTGGAAGACAGAGGCAACGCTGACG
TGGAAGTAGCGGGCGGAGGGTTGGGCGGGTCTGCGGTAGGTTTACACACCCCACAATTTTCTCCA
ATTGCAGCATCAGCAGGAACAGGGCCATCGTACTCGACAATGTTG
Found at i:28585 original size:105 final size:99
Alignment explanation
Indices: 28204--29544 Score: 950
Period size: 105 Copynumber: 12.7 Consensus size: 99
28194 AGATGGTGGG
* * * * *
28204 AGAACCAGTAGCGTCGGTGTTGTCAGAAGTGACAGAACCAGTAGCGTCAGTCTCGTCAGAAGTGA
1 AGAACCGGTAGCGTCAGTCTCGTCAGAGGTGACAGAACCAGTAGCGTCAGTCTCGTCAGAAGTGA
* * *
28269 CGGAACCGGTAGCGTCAGTCTCGTTAGAGGTCGCAGC
66 CAGAACCAGTAGCGTCAGTCTCGTCAGAGGT-G-A-C
* * * * *
28306 AGAACCGGTAGCGTCAGTCTCGTCAGAAGTGGCAGAGCCGGACAAGGTCGCGTCAGTCTCGTTAG
1 AGAACCGGTAGCGTCAGTCTCGTCAGAGGTGACAGA-----ACCA-GTAGCGTCAGTCTCGTCAG
* * **
28371 AGGTGACAGAACCAGTTGCGTCAGTCTCGTTGGAGGTGAC
60 AAGTGACAGAACCAGTAGCGTCAGTCTCGTCAGAGGTGAC
* * * * * * *
28411 AGAACCAGTAGAGTCAGTCTCGTCAGAAGTGACAGGACCAGTAGCATCGGTCTCATCAGAAGTGA
1 AGAACCGGTAGCGTCAGTCTCGTCAGAGGTGACAGAACCAGTAGCGTCAGTCTCGTCAGAAGTGA
*
28476 CAGAACCAGTAGCGTCAGTCTTGTCAGAGGTGAC
66 CAGAACCAGTAGCGTCAGTCTCGTCAGAGGTGAC
* * **
28510 GGAACCGGATA-CGGTTGCGGTCTCGTCAGAGGTCGCAGCAGAACCAGTAGCGTCAGTCTCGTTG
1 AGAACCGG-TAGC-G-T-CAGTCTCGTCAGAGGT-G-A-CAGAACCAGTAGCGTCAGTCTCGTCA
* * * *
28574 GAGGTGACAGAACCAGTCGCGTCGGTCTCGTCAGAAGTGAC
59 GAAGTGACAGAACCAGTAGCGTCAGTCTCGTCAGAGGTGAC
* * ** *
28615 AGAACCGGACACGGACACGTCAGTCTCGTTAGAGGTGACAGAACCAGTAGCACCGGTCTCGTCAG
1 AGAACCGG-TA--G---CGTCAGTCTCGTCAGAGGTGACAGAACCAGTAGCGTCAGTCTCGTCAG
*
28680 AAGTGACAGAACCGGATACGGTAGCGTCAGTCTCGTTAGAGGTGAC
60 AAGTGACAGAACC----A--GTAGCGTCAGTCTCGTCAGAGGTGAC
* * * * * *
28726 AGAACCAGTAGCGTCAGTCTCGTTAGAGGTGACAGACCCAGTAGCATCAGTCTCGTTAGAGGTGA
1 AGAACCGGTAGCGTCAGTCTCGTCAGAGGTGACAGAACCAGTAGCGTCAGTCTCGTCAGAAGTGA
* *
28791 CGGAACCAGTAGCGTCAGTCTTGTCAGAGGTGAC
66 CAGAACCAGTAGCGTCAGTCTCGTCAGAGGTGAC
* ** * * *
28825 AGAACCAGCCGAC-TCGGTCTCGTTAGAGGTCGCAGCAGAACCGGTAGCGTCAGTCTCGTCAGAA
1 AGAACCGGTAG-CGTCAGTCTCGTCAGAGGT-G-A-CAGAACCAGTAGCGTCAGTCTCGTCAGAA
* * * *
28889 GAGGCAGAACCGGACACGGTCAAC-TCAGTCTCGTTAGAGGTGAC
62 GTGACAGAA-C---CA--GT-AGCGTCAGTCTCGTCAGAGGTGAC
* * ** * * *
28933 AGACCCAGTAGCGTCAGTCTCGTTGGAGGTGACAGAACC-GGACACGTCGGTCTCGTCAGAAGTG
1 AGAACCGGTAGCGTCAGTCTCGTCAGAGGTGACAGAACCAGTA-GCGTCAGTCTCGTCAGAAGTG
*
28997 ACAGAACCGGATACGGTAGCGTCAGTCTCGTTAGAGGTGAC
65 ACAGAACC----A--GTAGCGTCAGTCTCGTCAGAGGTGAC
* * * * * *
29038 AGAACCAGTCGCATCGGTCTCGTCAGAAGTGACAGAACCGGATACGGTAGCGTCAGTCTCGTTAG
1 AGAACCGGTAGCGTCAGTCTCGTCAGAGGTGACAGAACC----A--GTAGCGTCAGTCTCGTCAG
*
29103 AAGTGACAGAACCGGATACGGTAGCGTCAGTCTCGTTAGAGGTGAC
60 AAGTGACAGAACC----A--GTAGCGTCAGTCTCGTCAGAGGTGAC
* * * * *
29149 AGAACCAGTCGCATCGGTCTCGTCAGAAGTGACAGAACCGGACACGGTCA-CGTCAGTCTCGTCA
1 AGAACCGGTAGCGTCAGTCTCGTCAGAGGTGACAGAA-C---CA--GT-AGCGTCAGTCTCGTCA
*
29213 GAAGTGACAGAACCGGACACGGTAGCGTCAGTCTCGTTAGAGGTGAC
59 GAAGTGACAGAA-C---CA--GTAGCGTCAGTCTCGTCAGAGGTGAC
* * * * *
29260 AGAACCAGTAGCGTCAGTCTCGTTAGAGGTGACAGACCCAGTAGCATCGGTCTCGTCAGAAGTGA
1 AGAACCGGTAGCGTCAGTCTCGTCAGAGGTGACAGAACCAGTAGCGTCAGTCTCGTCAGAAGTGA
*
29325 CAGAACCGGACACGGTCA-CGTCAGTCTCGTCAGAAGTGAC
66 CAGAA-C---CA--GT-AGCGTCAGTCTCGTCAGAGGTGAC
* * * *
29365 AGAACCGGACACGGTCGCGTCAGTCTCGTTAGAGGTGACAGAACCAGTAGCATCAGTCTCGTTAG
1 AG-A----AC-CGGTAGCGTCAGTCTCGTCAGAGGTGACAGAACCAGTAGCGTCAGTCTCGTCAG
* * *
29430 AGGTGACGGAACCAGTAGCGTCAGTCTTGTCAGAGGTGAC
60 AAGTGACAGAACCAGTAGCGTCAGTCTCGTCAGAGGTGAC
* ** * * *
29470 AGAACCAGCCGAC-TCGGTCTCGTTAGAGGTCGCAGCAGAACCGGTAGCGTCAGTCTCGTCAGAA
1 AGAACCGGTAG-CGTCAGTCTCGTCAGAGGT-G-A-CAGAACCAGTAGCGTCAGTCTCGTCAGAA
* *
29534 GAGGCAGAACC
62 GTGACAGAACC
29545 GGACACGGTT
Statistics
Matches: 1033, Mismatches: 134, Indels: 144
0.79 0.10 0.11
Matches are distributed among these distances:
99 124 0.12
100 12 0.01
101 5 0.00
102 108 0.10
103 2 0.00
104 9 0.01
105 357 0.35
106 7 0.01
107 11 0.01
108 107 0.10
109 4 0.00
110 6 0.01
111 274 0.27
112 5 0.00
115 2 0.00
ACGTcount: A:0.26, C:0.24, G:0.31, T:0.19
Consensus pattern (99 bp):
AGAACCGGTAGCGTCAGTCTCGTCAGAGGTGACAGAACCAGTAGCGTCAGTCTCGTCAGAAGTGA
CAGAACCAGTAGCGTCAGTCTCGTCAGAGGTGAC
Left flanking sequence: Indices 27704 -- 28203
GCATATCGTGTGACTTGCGAAACAACGCACTCTACCTTGAAAAAAGTAGTAAGCTCTCTCAATAT
CTTGGCCAACTTGAGTGGCGAGTTCTCTCATCATACAATAAGGATTGGCTATCAAGTAACGAAGG
TGTTTGTATTTAATGAAATAACCGAAATGATGTTCTTGTGATATATGACTGGCACGAAATGAAGG
GGGTGTTGTTAAACGTAGACAGTTACTGTGACGGCCGGAGCAGTCACGGTAGCGCTGGCGTGGAT
GTCGCAGGTGGGCCGGGTGTCAGAAGGAAGCGGCGACCACATACTTCCCAGAGAGGACTCAGTAG
TCCGATCAGTGGAGGTGGGCCCGGGTAAATTAGGATCAGTCTCGTTAGAGGTGGTCGGAGTGGGA
GTGGTAGTCTCAGTTTCGTCAGAGGTAGTAGGCTCCGATACATTCGAAGCAGTCTCAGTGGATGT
GTTCGTAACGGAGGCGGTAGCGTCGGTCTCGTTAGAGATGGTGGG
Right flanking sequence: Indices 29545 -- 30044
GGACACGGTTTCAGTTTCGTTGGAGACGGTCGTAGCAGAACCGGACACGGTCGACTCAGTCTCAT
CAGTGGTGGTAGACACAGACTCGTCGGACGTAATCAGGATGAGAGTGGTGGTCTCGGACCCGGTC
AGAGTCGTCTCGCTCTCGCTTGAGAGGGTAAAACCAGACTCGTCGGAGGTAATCAGAATGAGCGT
GGTAGTCTCAGTACCGTCAGAGGTGATCTGTACAGAGCTCGATTCAGTCTCTCCCGAGATTATCG
ACTCGGACAAGGTGGATCCAGTTTCAGTCTGCTTCCCTGTGGAAGACAGAGGCAACGCTGACGTG
GAAGTAGCGGGCGGAGGGTTGGGCGGGTCTGCGGTAGGTTTACACACCCCACAATTTTCTCCAAT
TGCAGCATCAGCAGGAACAGGGCCATCGTACTCGACAATGTTGTTTTCAAGCCCGCCCCAGAATT
CAGCTTCACGAGAAGAGAACTTGAATTTATCAGCGGAGTAACCGG
Found at i:28722 original size:144 final size:139
Alignment explanation
Indices: 28232--29532 Score: 1141
Period size: 144 Copynumber: 9.2 Consensus size: 139
28222 GTTGTCAGAA
* * *
28232 GTGACAGAACCAGTAGCGTCAGTCTCGTCAGAAGTGACGGAACC-GGTAGCGTCAGTCTCGTTAG
1 GTGACAGAACCAGTAGCGTCAGTCTCGTCAGAGGTGACAGAACCACGTAGCGTCAGTCTCGTTAG
* * * * *
28296 AGGTCGCAGCAGAACCGGTAGCGTCAGTCTCGTCAGAAGTGGCAGAGCCGGACAAGGTCGCGTCA
66 AGGT-G-A-CAGAACCAGTAGCGTCAGTCTCGTCAGAAGTGACAGAACCGGACACGGTCACGTCA
28361 GTCTCGTTAGAG
128 GTCTCGTTAGAG
* ** * *
28373 GTGACAGAACCAGTTGCGTCAGTCTCGTTGGAGGTGACAGAACCA-GTAGAGTCAGTCTCGTCAG
1 GTGACAGAACCAGTAGCGTCAGTCTCGTCAGAGGTGACAGAACCACGTAGCGTCAGTCTCGTTAG
* * * * *
28437 AAGTGACAGGACCAGTAGCATCGGTCTCATCAGAAGTGACAGAA-C---CA--GT-AGCGTCAGT
66 AGGTGACAGAACCAGTAGCGTCAGTCTCGTCAGAAGTGACAGAACCGGACACGGTCA-CGTCAGT
* *
28495 CTTGTCAGAG
130 CTCGTTAGAG
* * *
28505 GTGACGGAACCGGATA-CGGTTGCGGTCTCGTCAGAGGTCGCAGCAGAACCA-GTAGCGTCAGTC
1 GTGACAGAACCAG-TAGC-G-T-CAGTCTCGTCAGAGGT-G-A-CAGAACCACGTAGCGTCAGTC
* * * *
28568 TCGTTGGAGGTGACAGAACCAGTCGCGTCGGTCTCGTCAGAAGTGACAGAACCGGACACGGACAC
59 TCGTTAGAGGTGACAGAACCAGTAGCGTCAGTCTCGTCAGAAGTGACAGAACCGGACACGGTCAC
28633 GTCAGTCTCGTTAGAG
124 GTCAGTCTCGTTAGAG
** * *
28649 GTGACAGAACCAGTAGCACCGGTCTCGTCAGAAGTGACAGAACCGGATACGGTAGCGTCAGTCTC
1 GTGACAGAACCAGTAGCGTCAGTCTCGTCAGAGGTGACAGAACC----AC-GTAGCGTCAGTCTC
* * *
28714 GTTAGAGGTGACAGAACCAGTAGCGTCAGTCTCGTTAGAGGTGACAG-ACC---CA--GT-AGCA
61 GTTAGAGGTGACAGAACCAGTAGCGTCAGTCTCGTCAGAAGTGACAGAACCGGACACGGTCA-CG
28772 TCAGTCTCGTTAGAG
125 TCAGTCTCGTTAGAG
* * *
28787 GTGACGGAACCAGTAGCGTCAGTCTTGTCAGAGGTGACAGAACCAGCCG-A-C-TCGGTCTCGTT
1 GTGACAGAACCAGTAGCGTCAGTCTCGTCAGAGGTGACAGAACCA--CGTAGCGTCAGTCTCGTT
* * *
28849 AGAGGTCGCAGCAGAACCGGTAGCGTCAGTCTCGTCAGAAGAGGCAGAACCGGACACGGTCAAC-
64 AGAGGT-G-A-CAGAACCAGTAGCGTCAGTCTCGTCAGAAGTGACAGAACCGGACACGGTC-ACG
28913 TCAGTCTCGTTAGAG
125 TCAGTCTCGTTAGAG
* ** * *
28928 GTGACAGACCCAGTAGCGTCAGTCTCGTTGGAGGTGACAGAACCGGAC--A-CGTCGGTCTCGTC
1 GTGACAGAACCAGTAGCGTCAGTCTCGTCAGAGGTGACAGAACC--ACGTAGCGTCAGTCTCGTT
* * * *
28990 AGAAGTGACAGAACCGGATACGGTAGCGTCAGTCTCGTTAGAGGTGACAGAA-C---CA--GTCG
64 AGAGGTGACAGAACC----A--GTAGCGTCAGTCTCGTCAGAAGTGACAGAACCGGACACGGTCA
* * * *
29049 CATCGGTCTCGTCAGAA
123 CGTCAGTCTCGTTAGAG
* *
29066 GTGACAGAACCGGATACGGTAGCGTCAGTCTCGTTAGAAGTGACAGAACCGGATACGGTAGCGTC
1 GTGACAGAACC----A--GTAGCGTCAGTCTCGTCAGAGGTGACAGAACC----AC-GTAGCGTC
* * *
29131 AGTCTCGTTAGAGGTGACAGAACCAGTCGCATCGGTCTCGTCAGAAGTGACAGAACCGGACACGG
55 AGTCTCGTTAGAGGTGACAGAACCAGTAGCGTCAGTCTCGTCAGAAGTGACAGAACCGGACACGG
* *
29196 TCACGTCAGTCTCGTCAGAA
120 TCACGTCAGTCTCGTTAGAG
*
29216 GTGACAGAACCGGACACGGTAGCGTCAGTCTCGTTAGAGGTGACAGAACCA-GTAGCGTCAGTCT
1 GTGACAGAA-C---CA--GTAGCGTCAGTCTCGTCAGAGGTGACAGAACCACGTAGCGTCAGTCT
* * *
29280 CGTTAGAGGTGACAGACCCAGTAGCATCGGTCTCGTCAGAAGTGACAGAACCGGACACGGTCACG
60 CGTTAGAGGTGACAGAACCAGTAGCGTCAGTCTCGTCAGAAGTGACAGAACCGGACACGGTCACG
* *
29345 TCAGTCTCGTCAGAA
125 TCAGTCTCGTTAGAG
* * *
29360 GTGACAGAACCGGACACGGTCGCGTCAGTCTCGTTAGAGGTGACAGAACCA-GTAGCATCAGTCT
1 GTGACAGAA-C---CA--GTAGCGTCAGTCTCGTCAGAGGTGACAGAACCACGTAGCGTCAGTCT
* * * *
29424 CGTTAGAGGTGACGGAACCAGTAGCGTCAGTCTTGTCAGAGGTGACAGAACCAG-C-C-G--AC-
60 CGTTAGAGGTGACAGAACCAGTAGCGTCAGTCTCGTCAGAAGTGACAGAACCGGACACGGTCACG
*
29483 TCGGTCTCGTTAGAG
125 TCAGTCTCGTTAGAG
*
29498 GTCGCAGCAGAACCGGTAGCGTCAGTCTCGTCAGA
1 GT-G-A-CAGAACCAGTAGCGTCAGTCTCGTCAGA
29533 AGAGGCAGAA
Statistics
Matches: 979, Mismatches: 109, Indels: 150
0.79 0.09 0.12
Matches are distributed among these distances:
132 45 0.05
133 4 0.00
134 6 0.01
135 63 0.06
136 5 0.01
137 5 0.01
138 202 0.21
139 9 0.01
140 11 0.01
141 152 0.16
142 6 0.01
143 9 0.01
144 365 0.37
145 2 0.00
146 4 0.00
148 2 0.00
149 1 0.00
150 86 0.09
151 1 0.00
154 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.31, T:0.19
Consensus pattern (139 bp):
GTGACAGAACCAGTAGCGTCAGTCTCGTCAGAGGTGACAGAACCACGTAGCGTCAGTCTCGTTAG
AGGTGACAGAACCAGTAGCGTCAGTCTCGTCAGAAGTGACAGAACCGGACACGGTCACGTCAGTC
TCGTTAGAG
Left flanking sequence: Indices 27732 -- 28231
ACTCTACCTTGAAAAAAGTAGTAAGCTCTCTCAATATCTTGGCCAACTTGAGTGGCGAGTTCTCT
CATCATACAATAAGGATTGGCTATCAAGTAACGAAGGTGTTTGTATTTAATGAAATAACCGAAAT
GATGTTCTTGTGATATATGACTGGCACGAAATGAAGGGGGTGTTGTTAAACGTAGACAGTTACTG
TGACGGCCGGAGCAGTCACGGTAGCGCTGGCGTGGATGTCGCAGGTGGGCCGGGTGTCAGAAGGA
AGCGGCGACCACATACTTCCCAGAGAGGACTCAGTAGTCCGATCAGTGGAGGTGGGCCCGGGTAA
ATTAGGATCAGTCTCGTTAGAGGTGGTCGGAGTGGGAGTGGTAGTCTCAGTTTCGTCAGAGGTAG
TAGGCTCCGATACATTCGAAGCAGTCTCAGTGGATGTGTTCGTAACGGAGGCGGTAGCGTCGGTC
TCGTTAGAGATGGTGGGAGAACCAGTAGCGTCGGTGTTGTCAGAA
Right flanking sequence: Indices 29533 -- 30032
AGAGGCAGAACCGGACACGGTTTCAGTTTCGTTGGAGACGGTCGTAGCAGAACCGGACACGGTCG
ACTCAGTCTCATCAGTGGTGGTAGACACAGACTCGTCGGACGTAATCAGGATGAGAGTGGTGGTC
TCGGACCCGGTCAGAGTCGTCTCGCTCTCGCTTGAGAGGGTAAAACCAGACTCGTCGGAGGTAAT
CAGAATGAGCGTGGTAGTCTCAGTACCGTCAGAGGTGATCTGTACAGAGCTCGATTCAGTCTCTC
CCGAGATTATCGACTCGGACAAGGTGGATCCAGTTTCAGTCTGCTTCCCTGTGGAAGACAGAGGC
AACGCTGACGTGGAAGTAGCGGGCGGAGGGTTGGGCGGGTCTGCGGTAGGTTTACACACCCCACA
ATTTTCTCCAATTGCAGCATCAGCAGGAACAGGGCCATCGTACTCGACAATGTTGTTTTCAAGCC
CGCCCCAGAATTCAGCTTCACGAGAAGAGAACTTGAATTTATCAG
Found at i:29546 original size:33 final size:33
Alignment explanation
Indices: 28204--29532 Score: 962
Period size: 33 Copynumber: 37.8 Consensus size: 33
28194 AGATGGTGGG
* * * *
28204 AGAACCAGTAGCGTCGGTGTTGTCAGAAGTGAC
1 AGAACCAGTAGCGTCAGTCTCGTCAGAGGTGAC
*
28237 AGAACCAGTAGCGTCAGTCTCGTCAGAAGTGAC
1 AGAACCAGTAGCGTCAGTCTCGTCAGAGGTGAC
* * *
28270 GGAACCGGTAGCGTCAGTCTCGTTAGAGGTCGCAGC
1 AGAACCAGTAGCGTCAGTCTCGTCAGAGGT-G-A-C
* * *
28306 AGAACCGGTAGCGTCAGTCTCGTCAGAAGTGGC
1 AGAACCAGTAGCGTCAGTCTCGTCAGAGGTGAC
* * *
28339 AGAGCCGGACAAGGTCGCGTCAGTCTCGTTAGAGGTGAC
1 AGA-----ACCA-GTAGCGTCAGTCTCGTCAGAGGTGAC
* **
28378 AGAACCAGTTGCGTCAGTCTCGTTGGAGGTGAC
1 AGAACCAGTAGCGTCAGTCTCGTCAGAGGTGAC
* *
28411 AGAACCAGTAGAGTCAGTCTCGTCAGAAGTGAC
1 AGAACCAGTAGCGTCAGTCTCGTCAGAGGTGAC
* * * * *
28444 AGGACCAGTAGCATCGGTCTCATCAGAAGTGAC
1 AGAACCAGTAGCGTCAGTCTCGTCAGAGGTGAC
*
28477 AGAACCAGTAGCGTCAGTCTTGTCAGAGGTGAC
1 AGAACCAGTAGCGTCAGTCTCGTCAGAGGTGAC
* * *
28510 GGAACCGGATA-CGGTTGCGGTCTCGTCAGAGGTCGCAGC
1 AGAACCAG-TAGC-G-T-CAGTCTCGTCAGAGGT-G-A-C
**
28549 AGAACCAGTAGCGTCAGTCTCGTTGGAGGTGAC
1 AGAACCAGTAGCGTCAGTCTCGTCAGAGGTGAC
* * *
28582 AGAACCAGTCGCGTCGGTCTCGTCAGAAGTGAC
1 AGAACCAGTAGCGTCAGTCTCGTCAGAGGTGAC
* * *
28615 AGAACCGGACACGGACACGTCAGTCTCGTTAGAGGTGAC
1 AGAA-C---CA-GTA-GCGTCAGTCTCGTCAGAGGTGAC
** * *
28654 AGAACCAGTAGCACCGGTCTCGTCAGAAGTGAC
1 AGAACCAGTAGCGTCAGTCTCGTCAGAGGTGAC
*
28687 AGAACCGGATACGGTAGCGTCAGTCTCGTTAGAGGTGAC
1 AGAACC----A--GTAGCGTCAGTCTCGTCAGAGGTGAC
*
28726 AGAACCAGTAGCGTCAGTCTCGTTAGAGGTGAC
1 AGAACCAGTAGCGTCAGTCTCGTCAGAGGTGAC
* * *
28759 AGACCCAGTAGCATCAGTCTCGTTAGAGGTGAC
1 AGAACCAGTAGCGTCAGTCTCGTCAGAGGTGAC
* *
28792 GGAACCAGTAGCGTCAGTCTTGTCAGAGGTGAC
1 AGAACCAGTAGCGTCAGTCTCGTCAGAGGTGAC
** * *
28825 AGAACCAGCCGAC-TCGGTCTCGTTAGAGGTCGCAGC
1 AGAACCAGTAG-CGTCAGTCTCGTCAGAGGT-G-A-C
* * * *
28861 AGAACCGGTAGCGTCAGTCTCGTCAGAAGAGGC
1 AGAACCAGTAGCGTCAGTCTCGTCAGAGGTGAC
* *
28894 AGAACCGGACACGGTCAAC-TCAGTCTCGTTAGAGGTGAC
1 AGAA-C---CA--GT-AGCGTCAGTCTCGTCAGAGGTGAC
* **
28933 AGACCCAGTAGCGTCAGTCTCGTTGGAGGTGAC
1 AGAACCAGTAGCGTCAGTCTCGTCAGAGGTGAC
* * * *
28966 AGAACC-GGACACGTCGGTCTCGTCAGAAGTGAC
1 AGAACCAGTA-GCGTCAGTCTCGTCAGAGGTGAC
*
28999 AGAACCGGATACGGTAGCGTCAGTCTCGTTAGAGGTGAC
1 AGAACC----A--GTAGCGTCAGTCTCGTCAGAGGTGAC
* * * *
29038 AGAACCAGTCGCATCGGTCTCGTCAGAAGTGAC
1 AGAACCAGTAGCGTCAGTCTCGTCAGAGGTGAC
* *
29071 AGAACCGGATACGGTAGCGTCAGTCTCGTTAGAAGTGAC
1 AGAACC----A--GTAGCGTCAGTCTCGTCAGAGGTGAC
*
29110 AGAACCGGATACGGTAGCGTCAGTCTCGTTAGAGGTGAC
1 AGAACC----A--GTAGCGTCAGTCTCGTCAGAGGTGAC
* * * *
29149 AGAACCAGTCGCATCGGTCTCGTCAGAAGTGAC
1 AGAACCAGTAGCGTCAGTCTCGTCAGAGGTGAC
*
29182 AGAACCGGACACGGTCA-CGTCAGTCTCGTCAGAAGTGAC
1 AGAA-C---CA--GT-AGCGTCAGTCTCGTCAGAGGTGAC
*
29221 AGAACCGGACACGGTAGCGTCAGTCTCGTTAGAGGTGAC
1 AGAA-C---CA--GTAGCGTCAGTCTCGTCAGAGGTGAC
*
29260 AGAACCAGTAGCGTCAGTCTCGTTAGAGGTGAC
1 AGAACCAGTAGCGTCAGTCTCGTCAGAGGTGAC
* * * *
29293 AGACCCAGTAGCATCGGTCTCGTCAGAAGTGAC
1 AGAACCAGTAGCGTCAGTCTCGTCAGAGGTGAC
*
29326 AGAACCGGACACGGTCA-CGTCAGTCTCGTCAGAAGTGAC
1 AGAA-C---CA--GT-AGCGTCAGTCTCGTCAGAGGTGAC
* *
29365 AGAACCGGACACGGTCGCGTCAGTCTCGTTAGAGGTGAC
1 AGAA-C---CA--GTAGCGTCAGTCTCGTCAGAGGTGAC
* *
29404 AGAACCAGTAGCATCAGTCTCGTTAGAGGTGAC
1 AGAACCAGTAGCGTCAGTCTCGTCAGAGGTGAC
* *
29437 GGAACCAGTAGCGTCAGTCTTGTCAGAGGTGAC
1 AGAACCAGTAGCGTCAGTCTCGTCAGAGGTGAC
** * *
29470 AGAACCAGCCGAC-TCGGTCTCGTTAGAGGTCGCAGC
1 AGAACCAGTAG-CGTCAGTCTCGTCAGAGGT-G-A-C
*
29506 AGAACCGGTAGCGTCAGTCTCGTCAGA
1 AGAACCAGTAGCGTCAGTCTCGTCAGA
29533 AGAGGCAGAA
Statistics
Matches: 1061, Mismatches: 158, Indels: 151
0.77 0.12 0.11
Matches are distributed among these distances:
32 4 0.00
33 576 0.54
34 18 0.02
35 20 0.02
36 98 0.09
37 11 0.01
38 12 0.01
39 317 0.30
40 5 0.00
ACGTcount: A:0.26, C:0.24, G:0.31, T:0.19
Consensus pattern (33 bp):
AGAACCAGTAGCGTCAGTCTCGTCAGAGGTGAC
Left flanking sequence: Indices 27704 -- 28203
GCATATCGTGTGACTTGCGAAACAACGCACTCTACCTTGAAAAAAGTAGTAAGCTCTCTCAATAT
CTTGGCCAACTTGAGTGGCGAGTTCTCTCATCATACAATAAGGATTGGCTATCAAGTAACGAAGG
TGTTTGTATTTAATGAAATAACCGAAATGATGTTCTTGTGATATATGACTGGCACGAAATGAAGG
GGGTGTTGTTAAACGTAGACAGTTACTGTGACGGCCGGAGCAGTCACGGTAGCGCTGGCGTGGAT
GTCGCAGGTGGGCCGGGTGTCAGAAGGAAGCGGCGACCACATACTTCCCAGAGAGGACTCAGTAG
TCCGATCAGTGGAGGTGGGCCCGGGTAAATTAGGATCAGTCTCGTTAGAGGTGGTCGGAGTGGGA
GTGGTAGTCTCAGTTTCGTCAGAGGTAGTAGGCTCCGATACATTCGAAGCAGTCTCAGTGGATGT
GTTCGTAACGGAGGCGGTAGCGTCGGTCTCGTTAGAGATGGTGGG
Right flanking sequence: Indices 29533 -- 30032
AGAGGCAGAACCGGACACGGTTTCAGTTTCGTTGGAGACGGTCGTAGCAGAACCGGACACGGTCG
ACTCAGTCTCATCAGTGGTGGTAGACACAGACTCGTCGGACGTAATCAGGATGAGAGTGGTGGTC
TCGGACCCGGTCAGAGTCGTCTCGCTCTCGCTTGAGAGGGTAAAACCAGACTCGTCGGAGGTAAT
CAGAATGAGCGTGGTAGTCTCAGTACCGTCAGAGGTGATCTGTACAGAGCTCGATTCAGTCTCTC
CCGAGATTATCGACTCGGACAAGGTGGATCCAGTTTCAGTCTGCTTCCCTGTGGAAGACAGAGGC
AACGCTGACGTGGAAGTAGCGGGCGGAGGGTTGGGCGGGTCTGCGGTAGGTTTACACACCCCACA
ATTTTCTCCAATTGCAGCATCAGCAGGAACAGGGCCATCGTACTCGACAATGTTGTTTTCAAGCC
CGCCCCAGAATTCAGCTTCACGAGAAGAGAACTTGAATTTATCAG
Found at i:29586 original size:177 final size:174
Alignment explanation
Indices: 28358--29553 Score: 707
Period size: 177 Copynumber: 6.8 Consensus size: 174
28348 CAAGGTCGCG
* ** *
28358 TCAGTCTCGTTAGAGGTGACAGAACCAGTTGCGTCAGTCTCGTTGGAGGTGACAGAACCAGTAG-
1 TCAGTCTCGTTAGAGGTGACAGAACCAGTAGCGTCAGTCTCGTCAGAGGTGACAGAACCAGCAGC
* * * * * *
28422 AGTCAGTCTCGTCAGAAGTGACAG---G-AC-CAGT-AGCATCGGTCTCATCAGAAGTGACAGAA
66 A-TCGGTCTCGTCAGAAGTGACAGACAGAACACGGTCA-CGTCAGTCTCGTCAGAAGAGACAGAA
* * * * * * **
28481 CCAG-TA--G-CGTCAGTCTTGTCAGAGGTGACGGAACCGGATACGGT
129 CCGGACACGGTCGTCAGTCTCGTTAGAGGTGACAGAACCAG-TA-GCA
* * **
28525 TGCGGTCTCGTCAGAGGTCGCAGCAGAACCAGTAGCGTCAGTCTCGTTGGAGGTGACAGAACCAG
1 T-CAGTCTCGTTAGAGGT-G-A-CAGAACCAGTAGCGTCAGTCTCGTCAGAGGTGACAGAACCAG
* * * * * * *
28590 TC-GCGTCGGTCTCGTCAGAAGTGACAGAACCGGACACGGACACGTCAGTCTCGTTAGAGGTGAC
62 -CAGCATCGGTCTCGTCAGAAGTGACAG-ACAGAACACGGTCACGTCAGTCTCGTCAGAAGAGAC
* * * *
28654 AGAACCAGTAGCAC---CG---GTCTCGTCAGAAGTGACAGAACCGGATACGGTAGCG
125 AGAACC-GGA-CACGGTCGTCAGTCTCGTTAGAGGTGACAGAACC----A--GTAGCA
* * *
28706 TCAGTCTCGTTAGAGGTGACAGAACCAGTAGCGTCAGTCTCGTTAGAGGTGACAGACCCAGTAGC
1 TCAGTCTCGTTAGAGGTGACAGAACCAGTAGCGTCAGTCTCGTCAGAGGTGACAGAACCAGCAGC
* * * * * * *
28771 ATCAGTCTCGTTAGAGGTGAC-G---GAAC-CAGT-AGCGTCAGTCTTGTCAGAGGTGACAGAAC
66 ATCGGTCTCGTCAGAAGTGACAGACAGAACACGGTCA-CGTCAGTCTCGTCAGAAGAGACAGAAC
* * * * *
28830 CAG-C-C-GAC-TCGGTCTCGTTAGAGGTCGCAGCAGAACCGGTAGCG
130 CGGACACGGTCGTCAGTCTCGTTAGAGGT-G-A-CAGAACCAGTAGCA
* * * * * * *
28874 TCAGTCTCGTCAGAAGAGGCAGAACCGGACACGGTCAAC-TCAGTCTCGTTAGAGGTGACAGACC
1 TCAGTCTCGTTAGAGGTGACAGAA-C---CA--GT-AGCGTCAGTCTCGTCAGAGGTGACAGAAC
* * * * * * * * *
28938 CAGTAGCGTCAGTCTCGT-TGGAG-G--TGACAGAAC-CGGACACGTCGGTCTCGTCAGAAGTGA
59 CAGCAGCATCGGTCTCGTCAGAAGTGACAGACAGAACACGGTCACGTCAGTCTCGTCAGAAGAGA
* *
28998 CAGAACCGGATACGGTAGCGTCAGTCTCGTTAGAGGTGACAGAACCAGTCGCA
124 CAGAACCGGACACGGT--CGTCAGTCTCGTTAGAGGTGACAGAACCAGTAGCA
* * * * *
29051 TCGGTCTCGTCAGAAGTGACAGAACCGGATACGGTAGCGTCAGTCTCGTTAGAAGTGACAGAACC
1 TCAGTCTCGTTAGAGGTGACAGAACC----A--GTAGCGTCAGTCTCGTCAGAGGTGACAGAACC
* * * * * * * * *
29116 GGATACGGTAGCGTCAGTCTCGTTAG-AG-G--TGACAGAAC-CAGTCGCATCGGTCTCGTCAGA
60 ----A--GCAGCATCGGTCTCGTCAGAAGTGACAGACAGAACACGGTCACGTCAGTCTCGTCAGA
* * * *
29176 AGTGACAGAACCGGACACGGTCACGTCAGTCTCGTCAGAAGTGACAGAACCGGACACGGTAGCG
119 AGAGACAGAACCGGACACGGT--CGTCAGTCTCGTTAGAGGTGACAGAA-C---CA--GTAGCA
* * *
29240 TCAGTCTCGTTAGAGGTGACAGAACCAGTAGCGTCAGTCTCGTTAGAGGTGACAGACCCAGTAGC
1 TCAGTCTCGTTAGAGGTGACAGAACCAGTAGCGTCAGTCTCGTCAGAGGTGACAGAACCAGCAGC
* * *
29305 ATCGGTCTCGTCAGAAGTGACAGAACCGGACACGGTCACGTCAGTCTCGTCAGAAGTGACAGAAC
66 ATCGGTCTCGTCAGAAGTGACAG-ACAGAACACGGTCACGTCAGTCTCGTCAGAAGAGACAGAAC
29370 CGGACACGGTCGCGTCAGTCTCGTTAGAGGTGACAGAACCAGTAGCA
130 CGGACACGGT--CGTCAGTCTCGTTAGAGGTGACAGAACCAGTAGCA
* * *
29417 TCAGTCTCGTTAGAGGTGACGGAACCAGTAGCGTCAGTCTTGTCAGAGGTGACAGAACCAGCCG-
1 TCAGTCTCGTTAGAGGTGACAGAACCAGTAGCGTCAGTCTCGTCAGAGGTGACAGAACCAGCAGC
* * *
29481 ACTCGGTCTCGTTAGAGGTCG-CAG-CAGAAC-CGGT-AGCGTCAGTCTCGTCAGAAGAGGCAGA
66 A-TCGGTCTCGTCAGAAGT-GACAGACAGAACACGGTCA-CGTCAGTCTCGTCAGAAGAGACAGA
29542 ACCGGACACGGT
128 ACCGGACACGGT
29554 TTCAGTTTCG
Statistics
Matches: 840, Mismatches: 111, Indels: 149
0.76 0.10 0.14
Matches are distributed among these distances:
167 2 0.00
168 41 0.05
169 3 0.00
170 2 0.00
171 104 0.12
172 7 0.01
173 5 0.01
174 122 0.15
175 8 0.01
176 8 0.01
177 263 0.31
178 6 0.01
179 7 0.01
180 33 0.04
181 4 0.00
182 8 0.01
183 185 0.22
184 2 0.00
185 1 0.00
187 2 0.00
189 27 0.03
ACGTcount: A:0.26, C:0.24, G:0.31, T:0.19
Consensus pattern (174 bp):
TCAGTCTCGTTAGAGGTGACAGAACCAGTAGCGTCAGTCTCGTCAGAGGTGACAGAACCAGCAGC
ATCGGTCTCGTCAGAAGTGACAGACAGAACACGGTCACGTCAGTCTCGTCAGAAGAGACAGAACC
GGACACGGTCGTCAGTCTCGTTAGAGGTGACAGAACCAGTAGCA
Left flanking sequence: Indices 27858 -- 28357
AAATGATGTTCTTGTGATATATGACTGGCACGAAATGAAGGGGGTGTTGTTAAACGTAGACAGTT
ACTGTGACGGCCGGAGCAGTCACGGTAGCGCTGGCGTGGATGTCGCAGGTGGGCCGGGTGTCAGA
AGGAAGCGGCGACCACATACTTCCCAGAGAGGACTCAGTAGTCCGATCAGTGGAGGTGGGCCCGG
GTAAATTAGGATCAGTCTCGTTAGAGGTGGTCGGAGTGGGAGTGGTAGTCTCAGTTTCGTCAGAG
GTAGTAGGCTCCGATACATTCGAAGCAGTCTCAGTGGATGTGTTCGTAACGGAGGCGGTAGCGTC
GGTCTCGTTAGAGATGGTGGGAGAACCAGTAGCGTCGGTGTTGTCAGAAGTGACAGAACCAGTAG
CGTCAGTCTCGTCAGAAGTGACGGAACCGGTAGCGTCAGTCTCGTTAGAGGTCGCAGCAGAACCG
GTAGCGTCAGTCTCGTCAGAAGTGGCAGAGCCGGACAAGGTCGCG
Right flanking sequence: Indices 29554 -- 30053
TTCAGTTTCGTTGGAGACGGTCGTAGCAGAACCGGACACGGTCGACTCAGTCTCATCAGTGGTGG
TAGACACAGACTCGTCGGACGTAATCAGGATGAGAGTGGTGGTCTCGGACCCGGTCAGAGTCGTC
TCGCTCTCGCTTGAGAGGGTAAAACCAGACTCGTCGGAGGTAATCAGAATGAGCGTGGTAGTCTC
AGTACCGTCAGAGGTGATCTGTACAGAGCTCGATTCAGTCTCTCCCGAGATTATCGACTCGGACA
AGGTGGATCCAGTTTCAGTCTGCTTCCCTGTGGAAGACAGAGGCAACGCTGACGTGGAAGTAGCG
GGCGGAGGGTTGGGCGGGTCTGCGGTAGGTTTACACACCCCACAATTTTCTCCAATTGCAGCATC
AGCAGGAACAGGGCCATCGTACTCGACAATGTTGTTTTCAAGCCCGCCCCAGAATTCAGCTTCAC
GAGAAGAGAACTTGAATTTATCAGCGGAGTAACCGGGACCAATGT
Found at i:35410 original size:18 final size:18
Alignment explanation
Indices: 35387--35459 Score: 112
Period size: 18 Copynumber: 4.1 Consensus size: 18
35377 CATCCCTCTA
35387 CGTGTACCTTATACTAAG
1 CGTGTACCTTATACTAAG
*
35405 CGTGTACCTTTTACTAAG
1 CGTGTACCTTATACTAAG
*
35423 CGTGTACCTTTTACTAAG
1 CGTGTACCTTATACTAAG
35441 CGTGTACCTTCA-ACTAAG
1 CGTGTACCTT-ATACTAAG
35459 C
1 C
35460 TCATTGAATA
Statistics
Matches: 52, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
18 52 1.00
ACGTcount: A:0.25, C:0.25, G:0.16, T:0.34
Consensus pattern (18 bp):
CGTGTACCTTATACTAAG
Left flanking sequence: Indices 34887 -- 35386
CTCGGCCACTGCCTCGTCGACGGCGTAGGGGTTGTTGCGGAAGATCTTGAACAGGAAGTGCCACT
TGCCTTTGATCCGGGGAAGCTCATTCTGGAGCTGGTCGTGGAATTGGGTGAGGGTTTCGGGCGTG
GCCCGTTGCACGAGGATGACACACGAAACCATGGTTTTTCGCACCGCGCACTTGGTTGATAAGGT
GGACGGAAGGCACGAGAAGTTGGGAAAAGAGGACAAAGTTGTGAGAAAGAGACACGATAGAATTG
GGGGTGGTTAATTCGGGGCGGTTAACTCCTCCTTGTTCCTCAAATAGTCATTGAGTGTATATTCG
TGGGCGTAGATGTTTAGTCAATGGGGTGGATCCAGTGGTTACATTATGGTGCGAATATGGCCAGA
CTGAGGTGGAATATCACTACCAACCCCACTAACAGCAACAGTCACTATCAATTGACTCGCTAGGT
GGCTCAGAGTGATACCACCAACAATAACAGAACCACATCCCTCTA
Right flanking sequence: Indices 35460 -- 35959
TCATTGAATATATCTATCCCATCACCCGGAGCGCAAGCTCCACCAGGGCAAACGTCCCGGCAGAG
CACGGCACCGCCCGGGTCAAGCACGGGATCAACCCGCGCCAGAACCCGCGCCACCCATTGGTCGC
CAAAATGTGCTTGGTCGCCAACAGCACCTTGCCGTGGAACCTCAGCTCGGGCCCGAATTTGTCGC
TCTGGATGTTACTCTTGATCACATCGATCGGGTACGACGAGAGCCAGAGCGCATTGCCGGCAAGC
GCACCACACGCCAACAACTCGGGCGTTCCGATCTGGTCCCGCGACTTGTACCCGTGGTACGCCAC
CAACTTGCGGATGAGCGTCTCGTAGGTCAAAAACCACACCCCATATGCCTGGACCTCGCGAACTA
AAGTGATTCCCGTGCCTCTGAAGATACCAGCCACCCCGTTGGACCGGTAGATTTGCTTCACCATA
CTACTAAGGGTGTGGGTGGCTTTTTTGTCCGCCTGAGACAAGATA
Found at i:37435 original size:12 final size:11
Alignment explanation
Indices: 37418--37462 Score: 58
Period size: 12 Copynumber: 4.1 Consensus size: 11
37408 AAGGCTGGGA
37418 CCGAGAAGAAG
1 CCGAGAAGAAG
37429 TCCGAGAAG-A-
1 -CCGAGAAGAAG
37439 CCGAGAAGAAGG
1 CCGAGAAGAA-G
37451 CCGAGAAGAAG
1 CCGAGAAGAAG
37462 C
1 C
37463 AGGAAAAAAC
Statistics
Matches: 30, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
9 8 0.27
10 1 0.03
11 3 0.10
12 18 0.60
ACGTcount: A:0.42, C:0.20, G:0.36, T:0.02
Consensus pattern (11 bp):
CCGAGAAGAAG
Left flanking sequence: Indices 36918 -- 37417
AGCGTTTTTTGACGACTTTGAGCTGGGTGGGTCGCGGTTGCGTCGGTGTCTCCGTCGCAGCGAAA
ACCGCGCCGGAAATTACCGCCACTCCGGGTTTGGCGTGGTTGTGATGGTGTTGCTGGTGTTGGCT
GCTGCTGTAGCAGGCTGGGTTGGCTATACCCGCGGGTATTTGCCCCGCCAGGACTGTTTCTACGA
CCGGGTGGACCAGGTGGGCAATCTCTACTACAGAGTGCACACCGAGGGGGACCACTGCGACTTTG
CGTTGTCGGAGGGCCCCTGGCAGAAGGCGGTGGCCGAGACCGAGATCATGGCCAGCGTCAAGGGC
CCCGCGGTGTGCGAAGCCGTGTGCATCCAGGCGTCCAAGGGGGACACGTGGGCAAGCTACGTGGT
GGTGGGGACGGACTTGGTGGCGGTGCGGCTGAACGAGTGCGAGGAGCGCGGGTCGTTGGCTGACT
GCTGGGTGGAGGGTGAAAAGGCGGTGAGAGAGGCGAAGGCTGGGA
Right flanking sequence: Indices 37463 -- 37962
AGGAAAAAACGACTGAGAAGACTGAGAACAAGCCTGAAAAGAAGGCTGGGAAACAAGAGTCTCAG
GAGCCTCAGGAGCCCCAGCTTGACGAGAACGTCGAGGCCGTGGTGGAGATCCCCGAGCTGGTGGA
CGAGCCGCAAACGGTGGCGGAGCCCGCCCAGGACCAGGTGGTGGAGGAGATCGAGCCCGTGGAGG
TCCCTGTCCTCGCCAACCCCGACGAAGACGACGAGGATGACTACACCGAGTAAAACGAATAACGA
AATGTATTATATGAATGAACAACCGTGCGATAACCAGTGGCCGTCTTGGCTCTGGCCATCTCCGT
ATATAAATTACCCTAGCCTGTGCTATCTAGCTCCACCACCGAAGTTTGCGAGCCTGTTTCTTTCG
AGCTGTTTCTTCCACTGCTCTAGAAGCTTACTCCGCCTCCTCGAGCTCGTCCTCCCAGCCGTCAA
CGTCAACGTCGGCGTCCTTCTGGGGCATCAACTCCTTCATGTTGG
Found at i:37440 original size:21 final size:21
Alignment explanation
Indices: 37416--37459 Score: 79
Period size: 21 Copynumber: 2.1 Consensus size: 21
37406 CGAAGGCTGG
*
37416 GACCGAGAAGAAGTCCGAGAA
1 GACCGAGAAGAAGGCCGAGAA
37437 GACCGAGAAGAAGGCCGAGAA
1 GACCGAGAAGAAGGCCGAGAA
37458 GA
1 GA
37460 AGCAGGAAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.43, C:0.18, G:0.36, T:0.02
Consensus pattern (21 bp):
GACCGAGAAGAAGGCCGAGAA
Left flanking sequence: Indices 36916 -- 37415
CGAGCGTTTTTTGACGACTTTGAGCTGGGTGGGTCGCGGTTGCGTCGGTGTCTCCGTCGCAGCGA
AAACCGCGCCGGAAATTACCGCCACTCCGGGTTTGGCGTGGTTGTGATGGTGTTGCTGGTGTTGG
CTGCTGCTGTAGCAGGCTGGGTTGGCTATACCCGCGGGTATTTGCCCCGCCAGGACTGTTTCTAC
GACCGGGTGGACCAGGTGGGCAATCTCTACTACAGAGTGCACACCGAGGGGGACCACTGCGACTT
TGCGTTGTCGGAGGGCCCCTGGCAGAAGGCGGTGGCCGAGACCGAGATCATGGCCAGCGTCAAGG
GCCCCGCGGTGTGCGAAGCCGTGTGCATCCAGGCGTCCAAGGGGGACACGTGGGCAAGCTACGTG
GTGGTGGGGACGGACTTGGTGGCGGTGCGGCTGAACGAGTGCGAGGAGCGCGGGTCGTTGGCTGA
CTGCTGGGTGGAGGGTGAAAAGGCGGTGAGAGAGGCGAAGGCTGG
Right flanking sequence: Indices 37460 -- 37959
AGCAGGAAAAAACGACTGAGAAGACTGAGAACAAGCCTGAAAAGAAGGCTGGGAAACAAGAGTCT
CAGGAGCCTCAGGAGCCCCAGCTTGACGAGAACGTCGAGGCCGTGGTGGAGATCCCCGAGCTGGT
GGACGAGCCGCAAACGGTGGCGGAGCCCGCCCAGGACCAGGTGGTGGAGGAGATCGAGCCCGTGG
AGGTCCCTGTCCTCGCCAACCCCGACGAAGACGACGAGGATGACTACACCGAGTAAAACGAATAA
CGAAATGTATTATATGAATGAACAACCGTGCGATAACCAGTGGCCGTCTTGGCTCTGGCCATCTC
CGTATATAAATTACCCTAGCCTGTGCTATCTAGCTCCACCACCGAAGTTTGCGAGCCTGTTTCTT
TCGAGCTGTTTCTTCCACTGCTCTAGAAGCTTACTCCGCCTCCTCGAGCTCGTCCTCCCAGCCGT
CAACGTCAACGTCGGCGTCCTTCTGGGGCATCAACTCCTTCATGT
Found at i:46222 original size:18 final size:18
Alignment explanation
Indices: 46196--46255 Score: 84
Period size: 18 Copynumber: 3.3 Consensus size: 18
46186 TATGGAGTGT
46196 CGGAACATTTAAAAATGA
1 CGGAACATTTAAAAATGA
* * *
46214 CGGAGCATTTGAAAATGC
1 CGGAACATTTAAAAATGA
*
46232 CGGAACATTTAAAAACGA
1 CGGAACATTTAAAAATGA
46250 CGGAAC
1 CGGAAC
46256 GTTTTTAAAT
Statistics
Matches: 35, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
18 35 1.00
ACGTcount: A:0.43, C:0.17, G:0.22, T:0.18
Consensus pattern (18 bp):
CGGAACATTTAAAAATGA
Left flanking sequence: Indices 45696 -- 46195
AGTAGCACGTTCAATGTGGTTTTAGTAGTTGGTTCGGCTGAGGATCACCTTTAGAAGTGCAATTT
TAGCTGTTTTGCAGGGATTTCTGAGGGGTCTTTTTTAGTGCTGTAGTGCGCGATATTCCATTTAT
CATTAGTGTCACAGAGTGAACAGGGTCCTGCGATCTCTTGGCAGGGCAGTTACGGAAAACAAAGA
GGAAGGGGCGTTGTTGGTGCATTCCCGGGGAAAACGGGGGGTCTTGGCGGTGTGTTTCGCTACAC
GGGGGCTTAATTCGAGGCTATGTGTCGGCTCCCCGCGGGGAGTATTTTTGACTGCAGGTGTCAAT
GTAACCGAGACCGGACATAAAGAGCCAGTCAGGGGCGAGATAAGAGATAATGGGGGGAAACGGGG
TTCACGAAAATGCGAACCCTGGGGACCTTTGGGATTGTACCATCACTGAAAGACAGCATCTTTAC
ACGTGTTTTTTTGTTTTGTGTATTCAGAGAACATTTATGGAGTGT
Right flanking sequence: Indices 46256 -- 46755
GTTTTTAAATGATCCGTAATGAACAGGTTTGATGTGGGTTGCAGTGTGTTCTCATCTTCGACCAT
TGACTTTTGAAAAGCGAAGGGGTTTGCAGTACGGTCGCCCGCGGGGGATAACAGTAGTTAATGAG
AGCAGTGAGCGCTCAAAAGACCATTGCAGGTCCCGAGGGGAACACTGGTAGAAGCAAGAGACCAC
CACGAGGGTGAGCCCCCTGAAAGACAACTGCCAGTGTTGATTATTGGTACGATTTTGCCTCTATT
TATACCCCAGACCCATGCATGGTGACTCACCTTTGGATGAGCTGGGACGATGTGACGATGACTCA
CCGGTGAATGGGCCCATTGTGTCGTACTCCTGTTTTGGTGTGCTCTGTTCTCTTTTGAGTCACTC
CGATCCGCCTCTCCTGCTCATGTCTTATCCATTTTTCATTCGATACTTCTCCTCCAACCATATCA
TAACGAACACCCATAACCATACCCCAACCATACACAGTGAACATT
Found at i:46789 original size:13 final size:13
Alignment explanation
Indices: 46763--46817 Score: 83
Period size: 13 Copynumber: 4.2 Consensus size: 13
46753 ATTGACCATA
*
46763 CCCAGTGCACTTT
1 CCCAGTGAACTTT
*
46776 CCCTGTGAACTTT
1 CCCAGTGAACTTT
46789 CCCAGTGAACTTT
1 CCCAGTGAACTTT
*
46802 CCCGGTGAACTTT
1 CCCAGTGAACTTT
46815 CCC
1 CCC
46818 GAACATACCC
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
13 38 1.00
ACGTcount: A:0.16, C:0.36, G:0.16, T:0.31
Consensus pattern (13 bp):
CCCAGTGAACTTT
Left flanking sequence: Indices 46263 -- 46762
AATGATCCGTAATGAACAGGTTTGATGTGGGTTGCAGTGTGTTCTCATCTTCGACCATTGACTTT
TGAAAAGCGAAGGGGTTTGCAGTACGGTCGCCCGCGGGGGATAACAGTAGTTAATGAGAGCAGTG
AGCGCTCAAAAGACCATTGCAGGTCCCGAGGGGAACACTGGTAGAAGCAAGAGACCACCACGAGG
GTGAGCCCCCTGAAAGACAACTGCCAGTGTTGATTATTGGTACGATTTTGCCTCTATTTATACCC
CAGACCCATGCATGGTGACTCACCTTTGGATGAGCTGGGACGATGTGACGATGACTCACCGGTGA
ATGGGCCCATTGTGTCGTACTCCTGTTTTGGTGTGCTCTGTTCTCTTTTGAGTCACTCCGATCCG
CCTCTCCTGCTCATGTCTTATCCATTTTTCATTCGATACTTCTCCTCCAACCATATCATAACGAA
CACCCATAACCATACCCCAACCATACACAGTGAACATTGACCATA
Right flanking sequence: Indices 46818 -- 47317
GAACATACCCCTTTAACCAAACTGAGCCCACACAACCCTTAACCTACTCAACCCCCCACCTTCCT
TTTTAACTCTCTGAATCTATTCTATTCTCTATTAAGCAGAGGCCTTCTGGGCGCCAATGTAGTTG
ATGGCCGACCCGGCCTTGAAGAACTCAACCTGGTCCTTCGACATGGTGTGCTTGGTCTGGATGTC
AAACGTCGACCCGTCGCGCTTGGTCACACGCACAGTGAGCTCGCCCCCGTTGTCGCCACCCTTCT
CGATCATGTCGCGGAGGTTGACCGTGGTGAGCACGTCACCAGAGGCAATCTTGTCGTAGTCAGCC
TCGTTGGCAAAGGTGAGAGGCAACATACCCTGCTTCTTCAAGTTGGTCTCGTGGATACGGGCAAA
AGACTTGACGAGGATCACCTTACCGCCCAAGAACCGCGGCTGCAACGCAGCGTGCTCACGGGCAG
ACCCCTCACCGTAGTTGTGCTCGGCCACCACCACCCAGGGACGCT
Found at i:46800 original size:26 final size:26
Alignment explanation
Indices: 46763--46817 Score: 92
Period size: 26 Copynumber: 2.1 Consensus size: 26
46753 ATTGACCATA
* *
46763 CCCAGTGCACTTTCCCTGTGAACTTT
1 CCCAGTGAACTTTCCCGGTGAACTTT
46789 CCCAGTGAACTTTCCCGGTGAACTTT
1 CCCAGTGAACTTTCCCGGTGAACTTT
46815 CCC
1 CCC
46818 GAACATACCC
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.16, C:0.36, G:0.16, T:0.31
Consensus pattern (26 bp):
CCCAGTGAACTTTCCCGGTGAACTTT
Left flanking sequence: Indices 46263 -- 46762
AATGATCCGTAATGAACAGGTTTGATGTGGGTTGCAGTGTGTTCTCATCTTCGACCATTGACTTT
TGAAAAGCGAAGGGGTTTGCAGTACGGTCGCCCGCGGGGGATAACAGTAGTTAATGAGAGCAGTG
AGCGCTCAAAAGACCATTGCAGGTCCCGAGGGGAACACTGGTAGAAGCAAGAGACCACCACGAGG
GTGAGCCCCCTGAAAGACAACTGCCAGTGTTGATTATTGGTACGATTTTGCCTCTATTTATACCC
CAGACCCATGCATGGTGACTCACCTTTGGATGAGCTGGGACGATGTGACGATGACTCACCGGTGA
ATGGGCCCATTGTGTCGTACTCCTGTTTTGGTGTGCTCTGTTCTCTTTTGAGTCACTCCGATCCG
CCTCTCCTGCTCATGTCTTATCCATTTTTCATTCGATACTTCTCCTCCAACCATATCATAACGAA
CACCCATAACCATACCCCAACCATACACAGTGAACATTGACCATA
Right flanking sequence: Indices 46818 -- 47317
GAACATACCCCTTTAACCAAACTGAGCCCACACAACCCTTAACCTACTCAACCCCCCACCTTCCT
TTTTAACTCTCTGAATCTATTCTATTCTCTATTAAGCAGAGGCCTTCTGGGCGCCAATGTAGTTG
ATGGCCGACCCGGCCTTGAAGAACTCAACCTGGTCCTTCGACATGGTGTGCTTGGTCTGGATGTC
AAACGTCGACCCGTCGCGCTTGGTCACACGCACAGTGAGCTCGCCCCCGTTGTCGCCACCCTTCT
CGATCATGTCGCGGAGGTTGACCGTGGTGAGCACGTCACCAGAGGCAATCTTGTCGTAGTCAGCC
TCGTTGGCAAAGGTGAGAGGCAACATACCCTGCTTCTTCAAGTTGGTCTCGTGGATACGGGCAAA
AGACTTGACGAGGATCACCTTACCGCCCAAGAACCGCGGCTGCAACGCAGCGTGCTCACGGGCAG
ACCCCTCACCGTAGTTGTGCTCGGCCACCACCACCCAGGGACGCT
Found at i:49891 original size:18 final size:18
Alignment explanation
Indices: 49858--49921 Score: 87
Period size: 18 Copynumber: 3.6 Consensus size: 18
49848 CGTCATAGTA
*
49858 CACATCATATAACTGATCTC
1 CACATC-TA-AACTGACCTC
49878 CACATCTAAACTGACCTC
1 CACATCTAAACTGACCTC
49896 CACATCT--ACTGACCTC
1 CACATCTAAACTGACCTC
49912 CACATCTAAA
1 CACATCTAAA
49922 GACTGATCTC
Statistics
Matches: 41, Mismatches: 1, Indels: 6
0.85 0.02 0.12
Matches are distributed among these distances:
16 16 0.39
18 17 0.41
19 2 0.05
20 6 0.15
ACGTcount: A:0.34, C:0.36, G:0.05, T:0.25
Consensus pattern (18 bp):
CACATCTAAACTGACCTC
Left flanking sequence: Indices 49358 -- 49857
GGCCGTGAGTCACGCGGGTGCAGAGACGCTGGAGAGAGTTAGGTGGTGGTGGTGGGTGGTTGAGA
GGGCTAGCAGTGGTGGCAAAAGGGTGTTTTGCGGTCGGTGGAGCGGGGGCGGGTGACTAACCCAA
TGGCCGTGATTGGCTCGTGCGTTTGATCCGGTTCCGGCCGCGGTACCGGGGAAAATATGCAGGGT
GAGTACGGTGGTAAGGAAAGGGTACCAACACTCTGAACACTCTATAGAGGTGTCACGGTCAACCT
TGGATTGCAACCATCTGTGGGGGGCTGTTCCATGCGGGACGCACCCTGTGAGCGAAGCATCACTG
TGACGTGTCGTATAAGGGCTCAAACTCGATGAAGGGGAAGTAAGTCTCACACGAGCCCAATTGAC
TACAGAGTGCTAGGAACAGCTGGGGGGCCGCGAGCGGCGCCCCCCAGACCCCCCAACGCCTAGCT
GGATCTGGCTGGGTCTGGGCTCACAATATAGTACACGTCATAGTA
Right flanking sequence: Indices 49922 -- 50421
GACTGATCTCCTATCATTAGCCGATCTCCACCCTAGCTTCTTCCATTCTCTTGATCTACTTAAAA
GGCATCCTTGATGGCCGTTTTCCCGTTCTTAAAGTTGTAGCTCTTGCCAAACGTCTTCTGCTTGG
GCAAAACGTCGACAATCGCCGCAGCAACGTCCTGGCGGGTCACCGAAGCCTTGTCGTAGTCACCG
GGCTTGATGAGCTCCACCTGGCCCGTGCCCTCGTCGTCGGTCAACAACGTCGGCTTCAAAATGGT
GTAGTCGAGCCGGGCCCCAAACTCGTGGATGAGAATGCGGTCAGCGTAGAACTTGGCAATGTAGT
AGTCCCGGATCGGAGACTTGTCGACAAACGCCCGGTCGTCCGCGTGCAACGCACTCAAGAGCACG
TAGCGACGCACGCCAGCCTTGACGGAGCCCTCAAACAGCTTGACAGCCCCGTCGAGGTCCACCTG
CAACAAGTTTTTGCCCGCACTGCCCGCGGTGAACACCACGGCGTC
Found at i:49908 original size:16 final size:16
Alignment explanation
Indices: 49869--49919 Score: 75
Period size: 16 Copynumber: 3.1 Consensus size: 16
49859 ACATCATATA
*
49869 ACTGATCTCCACATCT
1 ACTGACCTCCACATCT
49885 AAACTGACCTCCACATCT
1 --ACTGACCTCCACATCT
49903 ACTGACCTCCACATCT
1 ACTGACCTCCACATCT
49919 A
1 A
49920 AAGACTGATC
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
16 17 0.53
18 15 0.47
ACGTcount: A:0.29, C:0.39, G:0.06, T:0.25
Consensus pattern (16 bp):
ACTGACCTCCACATCT
Left flanking sequence: Indices 49369 -- 49868
ACGCGGGTGCAGAGACGCTGGAGAGAGTTAGGTGGTGGTGGTGGGTGGTTGAGAGGGCTAGCAGT
GGTGGCAAAAGGGTGTTTTGCGGTCGGTGGAGCGGGGGCGGGTGACTAACCCAATGGCCGTGATT
GGCTCGTGCGTTTGATCCGGTTCCGGCCGCGGTACCGGGGAAAATATGCAGGGTGAGTACGGTGG
TAAGGAAAGGGTACCAACACTCTGAACACTCTATAGAGGTGTCACGGTCAACCTTGGATTGCAAC
CATCTGTGGGGGGCTGTTCCATGCGGGACGCACCCTGTGAGCGAAGCATCACTGTGACGTGTCGT
ATAAGGGCTCAAACTCGATGAAGGGGAAGTAAGTCTCACACGAGCCCAATTGACTACAGAGTGCT
AGGAACAGCTGGGGGGCCGCGAGCGGCGCCCCCCAGACCCCCCAACGCCTAGCTGGATCTGGCTG
GGTCTGGGCTCACAATATAGTACACGTCATAGTACACATCATATA
Right flanking sequence: Indices 49920 -- 50419
AAGACTGATCTCCTATCATTAGCCGATCTCCACCCTAGCTTCTTCCATTCTCTTGATCTACTTAA
AAGGCATCCTTGATGGCCGTTTTCCCGTTCTTAAAGTTGTAGCTCTTGCCAAACGTCTTCTGCTT
GGGCAAAACGTCGACAATCGCCGCAGCAACGTCCTGGCGGGTCACCGAAGCCTTGTCGTAGTCAC
CGGGCTTGATGAGCTCCACCTGGCCCGTGCCCTCGTCGTCGGTCAACAACGTCGGCTTCAAAATG
GTGTAGTCGAGCCGGGCCCCAAACTCGTGGATGAGAATGCGGTCAGCGTAGAACTTGGCAATGTA
GTAGTCCCGGATCGGAGACTTGTCGACAAACGCCCGGTCGTCCGCGTGCAACGCACTCAAGAGCA
CGTAGCGACGCACGCCAGCCTTGACGGAGCCCTCAAACAGCTTGACAGCCCCGTCGAGGTCCACC
TGCAACAAGTTTTTGCCCGCACTGCCCGCGGTGAACACCACGGCG
Found at i:51437 original size:25 final size:25
Alignment explanation
Indices: 51396--51456 Score: 104
Period size: 25 Copynumber: 2.4 Consensus size: 25
51386 TAGCACATTC
*
51396 CAGCCACGCACAGCTAAAACAGTCAA
1 CAGCCACG-ACAGCTAAAACAGCCAA
51422 CAGCCACGACAGCTAAAACAGCCAA
1 CAGCCACGACAGCTAAAACAGCCAA
51447 CAGCCACGAC
1 CAGCCACGAC
51457 TAAAACAACA
Statistics
Matches: 34, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
25 26 0.76
26 8 0.24
ACGTcount: A:0.41, C:0.38, G:0.16, T:0.05
Consensus pattern (25 bp):
CAGCCACGACAGCTAAAACAGCCAA
Left flanking sequence: Indices 50896 -- 51395
TCTTATGTCAGCATGACTCGGGCGGACTCCTCGAACCGACTCGATCGGGTGATGTTCACGTGAGA
CCTCACCCAAAAATTAGGAACCGATGACAAACTGTGTAGGGCGGTTTTGTGGCGATGGCGGCCCT
TTCGGGTTGACGCTCTTCCGCAACGCCTACTTGGACATGCCGCCGTACGAGGACCGGTTCAGGGA
CTTCAAGGTGATCGAATACGACGACTTCTCCGAGGTGGCCGACTACATCGAGCTGGGCCAGTGGG
AGGGGTTGTTCTACTTGGTCCAGACGTGGAACAACCAGTTCCGCATCCAGTCACCCTACTTCGGG
GACTACCACGACCACTGTCTCCTCCCTAAACATTACGGCGAAGACATGTTTGGGTGCATGAGCGT
GAAAATGTGCGGGCTCCCCGAGTGCATCGAGGACCACATGGAGCAGTTCTCGCACATCGGGTGTC
TGCTTATTTAGTTATGAAACGCATTTTTCACATTGTAGCACATTC
Right flanking sequence: Indices 51457 -- 51956
TAAAACAACAGGCCAACGTAACTAATCCTCGCTCGCAACGTCTGTCTGACTCGTGTGCAGGGCGA
TGCACGGCACCACCTGGCAACCGCCTCCAGGCTAGTATAGCCAATCGCCCGCTTCACCCACATTC
GCTTGCGAGGCAGCCCGGTCACGGGGTTCGCTACGCGGTCGAGCAGACGCGATCGGACCACGGGT
CCTGCAGGTACCCCGGGACGTGAACCAAAACAACAGGGGTAGCGCCGCACGGGGCTGAGCTCCCG
CCACAAACGCCCTGTGTCCGCGGTTACTTGTTAACCCCCGTAGCACCCCCACTCGCCTGCTCCGA
GCCCGACCGCCGTCGTCGTCTCGAGCGCTCGCCTACTATTTTTAGGTCACCCCACCGCTGGCAAA
AGAAATGCGGGAGTGTATAGTGCGCGAAGGACCCTGGCCAACTACCGTCGTATCGCCCCATCACC
GAACCCACGCCCAAAAAAAAGTAACCCATCGAAGCCTACCCTAAT
Found at i:51466 original size:25 final size:24
Alignment explanation
Indices: 51396--51473 Score: 68
Period size: 25 Copynumber: 3.0 Consensus size: 24
51386 TAGCACATTC
* *
51396 CAGCCACGCACAGCTAAAACAGTCAA
1 CAGCCACG-ACA-CAAAAACAGCCAA
*
51422 CAGCCACGACAGCTAAAACAGCCAA
1 CAGCCACGACA-CAAAAACAGCCAA
51447 CAGCCACGACTA-AAACAACAGGCCAA
1 CAGCCACGAC-ACAAA-AACA-GCCAA
51473 C
1 C
51474 GTAACTAATC
Statistics
Matches: 47, Mismatches: 2, Indels: 6
0.85 0.04 0.11
Matches are distributed among these distances:
24 2 0.04
25 30 0.64
26 15 0.32
ACGTcount: A:0.44, C:0.36, G:0.15, T:0.05
Consensus pattern (24 bp):
CAGCCACGACACAAAAACAGCCAA
Left flanking sequence: Indices 50896 -- 51395
TCTTATGTCAGCATGACTCGGGCGGACTCCTCGAACCGACTCGATCGGGTGATGTTCACGTGAGA
CCTCACCCAAAAATTAGGAACCGATGACAAACTGTGTAGGGCGGTTTTGTGGCGATGGCGGCCCT
TTCGGGTTGACGCTCTTCCGCAACGCCTACTTGGACATGCCGCCGTACGAGGACCGGTTCAGGGA
CTTCAAGGTGATCGAATACGACGACTTCTCCGAGGTGGCCGACTACATCGAGCTGGGCCAGTGGG
AGGGGTTGTTCTACTTGGTCCAGACGTGGAACAACCAGTTCCGCATCCAGTCACCCTACTTCGGG
GACTACCACGACCACTGTCTCCTCCCTAAACATTACGGCGAAGACATGTTTGGGTGCATGAGCGT
GAAAATGTGCGGGCTCCCCGAGTGCATCGAGGACCACATGGAGCAGTTCTCGCACATCGGGTGTC
TGCTTATTTAGTTATGAAACGCATTTTTCACATTGTAGCACATTC
Right flanking sequence: Indices 51474 -- 51973
GTAACTAATCCTCGCTCGCAACGTCTGTCTGACTCGTGTGCAGGGCGATGCACGGCACCACCTGG
CAACCGCCTCCAGGCTAGTATAGCCAATCGCCCGCTTCACCCACATTCGCTTGCGAGGCAGCCCG
GTCACGGGGTTCGCTACGCGGTCGAGCAGACGCGATCGGACCACGGGTCCTGCAGGTACCCCGGG
ACGTGAACCAAAACAACAGGGGTAGCGCCGCACGGGGCTGAGCTCCCGCCACAAACGCCCTGTGT
CCGCGGTTACTTGTTAACCCCCGTAGCACCCCCACTCGCCTGCTCCGAGCCCGACCGCCGTCGTC
GTCTCGAGCGCTCGCCTACTATTTTTAGGTCACCCCACCGCTGGCAAAAGAAATGCGGGAGTGTA
TAGTGCGCGAAGGACCCTGGCCAACTACCGTCGTATCGCCCCATCACCGAACCCACGCCCAAAAA
AAAGTAACCCATCGAAGCCTACCCTAATACACAACCACCCCACCA
Found at i:54273 original size:18 final size:18
Alignment explanation
Indices: 54247--54304 Score: 80
Period size: 18 Copynumber: 3.2 Consensus size: 18
54237 TGGACCGCAA
*
54247 GCTGCTCGACCGCAAGCC
1 GCTGATCGACCGCAAGCC
54265 GCTGATCGACCGCAAGCC
1 GCTGATCGACCGCAAGCC
* * *
54283 CCTGGTGGACCGCAAGCC
1 GCTGATCGACCGCAAGCC
54301 GCTG
1 GCTG
54305 GTGTCCGGAG
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 35 1.00
ACGTcount: A:0.17, C:0.40, G:0.31, T:0.12
Consensus pattern (18 bp):
GCTGATCGACCGCAAGCC
Left flanking sequence: Indices 53747 -- 54246
TTGAAGCTCATCCACCGCCTGGGCGAGTTGTTGTTGCACATCTTGACCGAGTTGCTCACCTACCT
GAAGAACACCCTCAAACGGCTGAAGCTCGAGCGCGCCAACTTCCAGATCTTGGAGGTGGTGGGCC
AGACCAAGCTGATCTTCGACAAGCTCGCGCGCGACCTGCGGGTCCACTTCCTGGTGCTCGTGAAG
CCCGCGGTCATGCGCAAGCTCATCTTGTTTGGCGACCTGAACCGCATCATCCAGATCGTCATGAA
CCTCGTGCTGAACTCGCTCAAGTTCACCCCGGTCGACGGGCTGGTGGACGTGCTGTTCAAGCTCT
TGGGCGAGTACGACTACACGCGGCTGGCCGCGGCGGACTTTGCCGAGGTGTTTGTCAAGCCTCGT
GGCCGTAGACTCAAGGAGTTGCCACCGGTGCCCGGGAAGCGCTTGCGCACGGTGCACGACGGCCG
CCAGGCGCTGGCCGCGCTGCTCGAGCGGCTCCCGCTGGACCGCAA
Right flanking sequence: Indices 54305 -- 54804
GTGTCCGGAGACCGCGACGACACCCTGGTGGTGACGCTCCCGACCTCCGAGTACGAAAACGCGCT
CTTCCGGCTGCAGTTCACCAAGCCGTTGCCGCTGGTGCCCGACGGGCTGGCTGCGGGGTCGTCGC
TGACTCCCGACACCGCCGTCGACCTGCTGCTGCTGTACCTGTCCAAGCCGCCGCCGTTGCCGCCC
AAGCCGCAGCAGATGGCCAACCGCCAGGTCATCAACACCAGCTACGACCTGAAGCTGGTGCTGCT
GTTGCTGACGCACTACGAGGTGGTCAAGAACGACCGCGTCTACAAGACCCGCACCCTCGGGCTGC
CCACCACCTGGGCGATCCAGATCCAGGTGCGCGACACCGGGCCGGGCATCGAGCCGGCGCTCCAG
GAGAAGGTGTTTGAGCCGTTCATCCAGGGCGACCAGACGTTGCTGCGGCTGTACGGCGGCACCGG
GCTCGGGTTGCTGATCTGCCGCCAGTTGGCCACGATGATGAACGG
Found at i:54305 original size:18 final size:18
Alignment explanation
Indices: 54254--54307 Score: 81
Period size: 18 Copynumber: 3.0 Consensus size: 18
54244 CAAGCTGCTC
* *
54254 GACCGCAAGCCGCTGATC
1 GACCGCAAGCCGCTGGTG
*
54272 GACCGCAAGCCCCTGGTG
1 GACCGCAAGCCGCTGGTG
54290 GACCGCAAGCCGCTGGTG
1 GACCGCAAGCCGCTGGTG
54308 TCCGGAGACC
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 32 1.00
ACGTcount: A:0.19, C:0.37, G:0.33, T:0.11
Consensus pattern (18 bp):
GACCGCAAGCCGCTGGTG
Left flanking sequence: Indices 53754 -- 54253
TCATCCACCGCCTGGGCGAGTTGTTGTTGCACATCTTGACCGAGTTGCTCACCTACCTGAAGAAC
ACCCTCAAACGGCTGAAGCTCGAGCGCGCCAACTTCCAGATCTTGGAGGTGGTGGGCCAGACCAA
GCTGATCTTCGACAAGCTCGCGCGCGACCTGCGGGTCCACTTCCTGGTGCTCGTGAAGCCCGCGG
TCATGCGCAAGCTCATCTTGTTTGGCGACCTGAACCGCATCATCCAGATCGTCATGAACCTCGTG
CTGAACTCGCTCAAGTTCACCCCGGTCGACGGGCTGGTGGACGTGCTGTTCAAGCTCTTGGGCGA
GTACGACTACACGCGGCTGGCCGCGGCGGACTTTGCCGAGGTGTTTGTCAAGCCTCGTGGCCGTA
GACTCAAGGAGTTGCCACCGGTGCCCGGGAAGCGCTTGCGCACGGTGCACGACGGCCGCCAGGCG
CTGGCCGCGCTGCTCGAGCGGCTCCCGCTGGACCGCAAGCTGCTC
Right flanking sequence: Indices 54308 -- 54807
TCCGGAGACCGCGACGACACCCTGGTGGTGACGCTCCCGACCTCCGAGTACGAAAACGCGCTCTT
CCGGCTGCAGTTCACCAAGCCGTTGCCGCTGGTGCCCGACGGGCTGGCTGCGGGGTCGTCGCTGA
CTCCCGACACCGCCGTCGACCTGCTGCTGCTGTACCTGTCCAAGCCGCCGCCGTTGCCGCCCAAG
CCGCAGCAGATGGCCAACCGCCAGGTCATCAACACCAGCTACGACCTGAAGCTGGTGCTGCTGTT
GCTGACGCACTACGAGGTGGTCAAGAACGACCGCGTCTACAAGACCCGCACCCTCGGGCTGCCCA
CCACCTGGGCGATCCAGATCCAGGTGCGCGACACCGGGCCGGGCATCGAGCCGGCGCTCCAGGAG
AAGGTGTTTGAGCCGTTCATCCAGGGCGACCAGACGTTGCTGCGGCTGTACGGCGGCACCGGGCT
CGGGTTGCTGATCTGCCGCCAGTTGGCCACGATGATGAACGGGAC
Found at i:56262 original size:17 final size:17
Alignment explanation
Indices: 56240--56273 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
56230 CTAGGATGGA
56240 ACTCGACCATTACAGGT
1 ACTCGACCATTACAGGT
*
56257 ACTCGACCATTGCAGGT
1 ACTCGACCATTACAGGT
56274 TCGTCAGTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (17 bp):
ACTCGACCATTACAGGT
Left flanking sequence: Indices 55740 -- 56239
GGCTGGCCGAGTTGCCGCCTCCCCCGCCTGGCGAGGGTCCTGCCATCACGGTGGACTCGCCGGGC
CCTTCATAGAATGCATGCCCCAGTGGCCTAATACATATAGAGTATAATTTTGGAGGAGAAATTAG
AAGGTTTTGGATACTTGGAGCTTTTAGCTTCATTGCGAGTGTTTGGGTGGGTGTAAAAGGTTGAA
AGTGGGTGGAAGCATCCTAGTAGTGTGACTGAACAGTGTTGTGGGGGTATTTTGTTTTAAAGATG
TCGCTAGGGCTTCTACGTTGGGACCATGTTTGTCTGATATTTGTGTCCTGCATATAGCTCGGCTG
CAAAATATAGATATGGAGACGGGAGATACCGTGTCTGCTCTAGTTTACGATACCCGTCTTGTTTG
TTAAATGTCTGTGTATCAGCGCCATAGTTCTGTAATCCCAGCCTGGAACAAGGCCATCCCGCTGC
TTCTGGCATTAACGTACATGGTGAGACTTTTGAGTCTAGGATGGA
Right flanking sequence: Indices 56274 -- 56773
TCGTCAGTTTGCCGAGGGCTCCTCTTAAAAGCATATGAATAGTTTGTCATCCTGCTAATTGCTCA
CTGAGGTGAATCTTTCCTACATGGGTTCGCCTTACATTGCAGTAACACACATACACCGGAGACTC
CCTATCACCTCTGATCAGTCCACTTCTCCGTCCAACAACACATCTCCTGGAATCCCCGTCTCTTT
ATTTTTTCCCGTGTCTCTCCACCTCACCGTAACACCACCAAACCACACTTCCGGTAACCCTCCGT
GTCGACCTTCCTCGGGCCGAGCGACACGACGCGGGGTAGTACCCACCCAATCCCAGCCTCTCCCA
CCACTCCACTATCCCTACTACTCTCTTTCTCTCTTACCGCCTCCCTCTCTTTCTATCTTTCCGCC
TGCTTCCCTCTCTCTCAGCCTCCTTCCCAACCCTCTTCAATTCTTTCGTTCTTTCGTTCTCTCGT
ACTACCTCGGTCTTCTCTACGCCCACTTCCTACCCATCGCGGGTA
Found at i:56651 original size:24 final size:24
Alignment explanation
Indices: 56619--56664 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
56609 ATCCCTACTA
*
56619 CTCTCTTTCTCTCTTACCGCCTCC
1 CTCTCTTTCTATCTTACCGCCTCC
*
56643 CTCTCTTTCTATCTTTCCGCCT
1 CTCTCTTTCTATCTTACCGCCT
56665 GCTTCCCTCT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.04, C:0.46, G:0.04, T:0.46
Consensus pattern (24 bp):
CTCTCTTTCTATCTTACCGCCTCC
Left flanking sequence: Indices 56119 -- 56618
CGTCTTGTTTGTTAAATGTCTGTGTATCAGCGCCATAGTTCTGTAATCCCAGCCTGGAACAAGGC
CATCCCGCTGCTTCTGGCATTAACGTACATGGTGAGACTTTTGAGTCTAGGATGGAACTCGACCA
TTACAGGTACTCGACCATTGCAGGTTCGTCAGTTTGCCGAGGGCTCCTCTTAAAAGCATATGAAT
AGTTTGTCATCCTGCTAATTGCTCACTGAGGTGAATCTTTCCTACATGGGTTCGCCTTACATTGC
AGTAACACACATACACCGGAGACTCCCTATCACCTCTGATCAGTCCACTTCTCCGTCCAACAACA
CATCTCCTGGAATCCCCGTCTCTTTATTTTTTCCCGTGTCTCTCCACCTCACCGTAACACCACCA
AACCACACTTCCGGTAACCCTCCGTGTCGACCTTCCTCGGGCCGAGCGACACGACGCGGGGTAGT
ACCCACCCAATCCCAGCCTCTCCCACCACTCCACTATCCCTACTA
Right flanking sequence: Indices 56665 -- 57164
GCTTCCCTCTCTCTCAGCCTCCTTCCCAACCCTCTTCAATTCTTTCGTTCTTTCGTTCTCTCGTA
CTACCTCGGTCTTCTCTACGCCCACTTCCTACCCATCGCGGGTAACCACCCACCCGTAAACATAG
CCGTCCGCCACCGACCACCACATCTCCGTCGCTCCCTTCCCCACCACTCTCCCGCGTTCCCCCAC
CCGTAAGCCCCACACCGCCGTCGTGCCTCCACATAAATTCCGAGCGCGACGCTACGTCACCATGG
CCAACAACGACAAACCGGTGCCCAAGAACATCGAGGAGCTCTTGCGCATGCTCTCTGCGGGCCAG
GAGCTCAGCGAGACCCAGCAGAAGCAGATGAAGGACTACAAATTCTGGAAAACCCAGCCGGTGCC
CGCGTTGGACGAGCCCATCGCAGCCGAGGGGCCCATCGAGGTCAAGGCGGTGGACAAGGTGCCTG
CGGAGCCGTTGCCGATGTTGGACGCGTTCGAGTGGCTGACCATCG
Found at i:58533 original size:11 final size:11
Alignment explanation
Indices: 58517--58580 Score: 67
Period size: 11 Copynumber: 5.8 Consensus size: 11
58507 AGGACCCCAG
58517 AACTGACCCTA
1 AACTGACCCTA
58528 AACTGACCC-A
1 AACTGACCCTA
* *
58538 GAATTGACCCTG
1 -AACTGACCCTA
* *
58550 AACTAACCCTG
1 AACTGACCCTA
*
58561 AACTGACCCAA
1 AACTGACCCTA
58572 AACTGACCC
1 AACTGACCC
58581 CTCAGTAGAC
Statistics
Matches: 44, Mismatches: 7, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
10 1 0.02
11 43 0.98
ACGTcount: A:0.36, C:0.36, G:0.12, T:0.16
Consensus pattern (11 bp):
AACTGACCCTA
Left flanking sequence: Indices 58017 -- 58516
CGCTGAAGCAGTTTGGCGTCGATGTGTTCAACGCTTTGGCAGTGCAGGACAACCTGTACTTCATC
AAGGACTGCAAGTTTGGTCTGGGCGACGGCTTCCTCAACTACTACTTGTTCAATTACAAGATGCA
GCCCGTGCACGGGGGCATCGATCCCACGACGAAGGAGGTGGCGGAGGATACTACGCTGGGCGTGG
GCGTGGTGTTGTTGTAGTTTAGTTGTTGTGTTATAGAAATAGACAGAGAATTGGAGGGTAGGATG
TGGAAGGATAGGATGTGGAAGTGAGAAGTGTAGGAGATCACTGGTAGTGGATGGGGACATGGGTA
GATATGGAGAGTGGGGAACATGAAACAATATGATAGAAGGAGTGAAAATGTTAAATGTTAGAAGG
AAATTGAAGTGGTGGGTTGCTTACTGGTTGATGAGACAAACTAAACCACTGAAAACCATATACCA
ACGAAGTAGCTATATAGTAAAGCAAACTTTCAGAAAGGACCCCAG
Right flanking sequence: Indices 58581 -- 59080
CTCAGTAGACCCCATCCGTTCTCATTTTTCCCTACTCGCCTCCCAAGCTACCCTTCCTCCCTTCC
TCACACGTCTCCTGCACACACCACCTACTCATCGCGGTCTTCAGTCCATCGCGACCATACCCCTC
CACGATGATTTCAAGCACTAGCTGGGTCCCGCGTGGGTTTGCCCTGGAATTCCCAGAGAAATACG
AGTTGGACGATGCGGAGATGGAGCGCATCACCCAGTTGGGGGCCATGGAGCTCGAGGACGCCAAG
GAGGACCTCGAGGAGGCCCAGGCTGCCAACCCGGAGTCGTTGGTGCCGCAAGAAACCGCTGACGA
CGACTTGAAGGCGTACGACCTCGAAAACTACGACAACGAGGATGCCGGCGAGGGGGTGGAAGCGC
TGATGTTCCCCGGTTTGGCCGGCACCGACGCCCAGTACCACGAGGACGGCGAAGACGCCTACTTG
ACGTTGCCGACGCAGGAAGACGAGGACGAGGAGAAGGAGGAGAAC
Found at i:58538 original size:22 final size:22
Alignment explanation
Indices: 58512--58580 Score: 93
Period size: 22 Copynumber: 3.1 Consensus size: 22
58502 CAGAAAGGAC
58512 CCCAGAACTGACCCTAAACTGA
1 CCCAGAACTGACCCTAAACTGA
* * *
58534 CCCAGAATTGACCCTGAACTAA
1 CCCAGAACTGACCCTAAACTGA
* *
58556 CCCTGAACTGACCCAAAACTGA
1 CCCAGAACTGACCCTAAACTGA
58578 CCC
1 CCC
58581 CTCAGTAGAC
Statistics
Matches: 39, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 39 1.00
ACGTcount: A:0.35, C:0.38, G:0.13, T:0.14
Consensus pattern (22 bp):
CCCAGAACTGACCCTAAACTGA
Left flanking sequence: Indices 58012 -- 58511
GATCACGCTGAAGCAGTTTGGCGTCGATGTGTTCAACGCTTTGGCAGTGCAGGACAACCTGTACT
TCATCAAGGACTGCAAGTTTGGTCTGGGCGACGGCTTCCTCAACTACTACTTGTTCAATTACAAG
ATGCAGCCCGTGCACGGGGGCATCGATCCCACGACGAAGGAGGTGGCGGAGGATACTACGCTGGG
CGTGGGCGTGGTGTTGTTGTAGTTTAGTTGTTGTGTTATAGAAATAGACAGAGAATTGGAGGGTA
GGATGTGGAAGGATAGGATGTGGAAGTGAGAAGTGTAGGAGATCACTGGTAGTGGATGGGGACAT
GGGTAGATATGGAGAGTGGGGAACATGAAACAATATGATAGAAGGAGTGAAAATGTTAAATGTTA
GAAGGAAATTGAAGTGGTGGGTTGCTTACTGGTTGATGAGACAAACTAAACCACTGAAAACCATA
TACCAACGAAGTAGCTATATAGTAAAGCAAACTTTCAGAAAGGAC
Right flanking sequence: Indices 58581 -- 59080
CTCAGTAGACCCCATCCGTTCTCATTTTTCCCTACTCGCCTCCCAAGCTACCCTTCCTCCCTTCC
TCACACGTCTCCTGCACACACCACCTACTCATCGCGGTCTTCAGTCCATCGCGACCATACCCCTC
CACGATGATTTCAAGCACTAGCTGGGTCCCGCGTGGGTTTGCCCTGGAATTCCCAGAGAAATACG
AGTTGGACGATGCGGAGATGGAGCGCATCACCCAGTTGGGGGCCATGGAGCTCGAGGACGCCAAG
GAGGACCTCGAGGAGGCCCAGGCTGCCAACCCGGAGTCGTTGGTGCCGCAAGAAACCGCTGACGA
CGACTTGAAGGCGTACGACCTCGAAAACTACGACAACGAGGATGCCGGCGAGGGGGTGGAAGCGC
TGATGTTCCCCGGTTTGGCCGGCACCGACGCCCAGTACCACGAGGACGGCGAAGACGCCTACTTG
ACGTTGCCGACGCAGGAAGACGAGGACGAGGAGAAGGAGGAGAAC
Found at i:58559 original size:33 final size:33
Alignment explanation
Indices: 58516--58580 Score: 94
Period size: 33 Copynumber: 2.0 Consensus size: 33
58506 AAGGACCCCA
* * *
58516 GAACTGACCCTAAACTGACCCAGAATTGACCCT
1 GAACTAACCCTAAACTGACCCAAAACTGACCCT
*
58549 GAACTAACCCTGAACTGACCCAAAACTGACCC
1 GAACTAACCCTAAACTGACCCAAAACTGACCC
58581 CTCAGTAGAC
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 28 1.00
ACGTcount: A:0.35, C:0.35, G:0.14, T:0.15
Consensus pattern (33 bp):
GAACTAACCCTAAACTGACCCAAAACTGACCCT
Left flanking sequence: Indices 58016 -- 58515
ACGCTGAAGCAGTTTGGCGTCGATGTGTTCAACGCTTTGGCAGTGCAGGACAACCTGTACTTCAT
CAAGGACTGCAAGTTTGGTCTGGGCGACGGCTTCCTCAACTACTACTTGTTCAATTACAAGATGC
AGCCCGTGCACGGGGGCATCGATCCCACGACGAAGGAGGTGGCGGAGGATACTACGCTGGGCGTG
GGCGTGGTGTTGTTGTAGTTTAGTTGTTGTGTTATAGAAATAGACAGAGAATTGGAGGGTAGGAT
GTGGAAGGATAGGATGTGGAAGTGAGAAGTGTAGGAGATCACTGGTAGTGGATGGGGACATGGGT
AGATATGGAGAGTGGGGAACATGAAACAATATGATAGAAGGAGTGAAAATGTTAAATGTTAGAAG
GAAATTGAAGTGGTGGGTTGCTTACTGGTTGATGAGACAAACTAAACCACTGAAAACCATATACC
AACGAAGTAGCTATATAGTAAAGCAAACTTTCAGAAAGGACCCCA
Right flanking sequence: Indices 58581 -- 59080
CTCAGTAGACCCCATCCGTTCTCATTTTTCCCTACTCGCCTCCCAAGCTACCCTTCCTCCCTTCC
TCACACGTCTCCTGCACACACCACCTACTCATCGCGGTCTTCAGTCCATCGCGACCATACCCCTC
CACGATGATTTCAAGCACTAGCTGGGTCCCGCGTGGGTTTGCCCTGGAATTCCCAGAGAAATACG
AGTTGGACGATGCGGAGATGGAGCGCATCACCCAGTTGGGGGCCATGGAGCTCGAGGACGCCAAG
GAGGACCTCGAGGAGGCCCAGGCTGCCAACCCGGAGTCGTTGGTGCCGCAAGAAACCGCTGACGA
CGACTTGAAGGCGTACGACCTCGAAAACTACGACAACGAGGATGCCGGCGAGGGGGTGGAAGCGC
TGATGTTCCCCGGTTTGGCCGGCACCGACGCCCAGTACCACGAGGACGGCGAAGACGCCTACTTG
ACGTTGCCGACGCAGGAAGACGAGGACGAGGAGAAGGAGGAGAAC
Found at i:61116 original size:45 final size:45
Alignment explanation
Indices: 61048--61818 Score: 717
Period size: 45 Copynumber: 17.1 Consensus size: 45
61038 TCCTGCGGGG
* * * * ** *
61048 GAACTCACAGGCTGTCCCCTACTGGCCAGAGCCTGTTGAAACGGC
1 GAACTCGCGGGCTTTCCACTACTGGCCAGAGCCTGTCCAAATGGC
*
61093 GAACTCGCGGGCTTTTCACTACTGGCCAGAGCCTGTCCAAATGGC
1 GAACTCGCGGGCTTTCCACTACTGGCCAGAGCCTGTCCAAATGGC
* ** * * * *
61138 GAAGC-CACACGCTGTCCACTGCT-GCTCAGCGCCTGTCCAAACGGC
1 GAA-CTCGCGGGCTTTCCACTACTGGC-CAGAGCCTGTCCAAATGGC
* * * ** *
61183 GAACTCGCGGGCTTTTCACCACTGGACAGAGCCTGTTGAAACGGC
1 GAACTCGCGGGCTTTCCACTACTGGCCAGAGCCTGTCCAAATGGC
* ** *
61228 GAACTCGCGGGCTTCCCGTTACCGGCCAGAGCCTGTCCAAATGGC
1 GAACTCGCGGGCTTTCCACTACTGGCCAGAGCCTGTCCAAATGGC
* ** *
61273 GAACTCGCGGGCTTCCCGTTACCGGCCAGAGCCTGTCCAAATGGC
1 GAACTCGCGGGCTTTCCACTACTGGCCAGAGCCTGTCCAAATGGC
* ** * * * *
61318 GAAGC-CACACGCTGTCCACTGCT-GCTCAGCGCCTGTCCAAACGGC
1 GAA-CTCGCGGGCTTTCCACTACTGGC-CAGAGCCTGTCCAAATGGC
* * *
61363 GAACTCGCTGGCTTTCCACTACTGGACAGAGCCTGTCCAAATGGT
1 GAACTCGCGGGCTTTCCACTACTGGCCAGAGCCTGTCCAAATGGC
* ** *
61408 GAACTCGCGGGCTTCCCGTTACCGGCCAGAGCCTGTCCAAATGGC
1 GAACTCGCGGGCTTTCCACTACTGGCCAGAGCCTGTCCAAATGGC
*** *
61453 GAACTCGCGGGCTTTCCACTACTGGCCAGAGCCTGTTGGAACGGC
1 GAACTCGCGGGCTTTCCACTACTGGCCAGAGCCTGTCCAAATGGC
* * ** * * * *
61498 AAAGC-CACACGCTGTCCACTGCT-GCTCAGCGCCTGTCCAAACGGC
1 GAA-CTCGCGGGCTTTCCACTACTGGC-CAGAGCCTGTCCAAATGGC
** *
61543 GAACTCGCGGGCTTTCCACTACTGGCCAGAGCCTGTTGAAACGGC
1 GAACTCGCGGGCTTTCCACTACTGGCCAGAGCCTGTCCAAATGGC
** *
61588 GAACTCGCGGGCTTTCCGTTACCGGCCAGAGCCTGTCCAAATGGC
1 GAACTCGCGGGCTTTCCACTACTGGCCAGAGCCTGTCCAAATGGC
** *
61633 GAACTCGCGGGCTTTCCGTTACCGGCCAGAGCCTGTCCAAATGGC
1 GAACTCGCGGGCTTTCCACTACTGGCCAGAGCCTGTCCAAATGGC
**
61678 GAACTCGCGGGCTTTCCACTACTTCCCAGAGCCTGTCCAAATGGC
1 GAACTCGCGGGCTTTCCACTACTGGCCAGAGCCTGTCCAAATGGC
* * ** * * *
61723 GAACTCGCTGGCTTCCCGTTACCGGCCAGAGCCTGTCCAAAAGGT
1 GAACTCGCGGGCTTTCCACTACTGGCCAGAGCCTGTCCAAATGGC
* * ** * * * *
61768 GAACTCTCAGGCTGACCATTGCTGGCCATAGCCTGTCCAAAAGGC
1 GAACTCGCGGGCTTTCCACTACTGGCCAGAGCCTGTCCAAATGGC
61813 GAACTC
1 GAACTC
61819 CTAAAGTTTA
Statistics
Matches: 594, Mismatches: 120, Indels: 24
0.80 0.16 0.03
Matches are distributed among these distances:
44 9 0.02
45 578 0.97
46 7 0.01
ACGTcount: A:0.20, C:0.34, G:0.27, T:0.19
Consensus pattern (45 bp):
GAACTCGCGGGCTTTCCACTACTGGCCAGAGCCTGTCCAAATGGC
Left flanking sequence: Indices 60548 -- 61047
TCAGACTAGTAGTTAGTCCGGGAGTACATAGAGTCCATAGTATTGTAGAGCATGAAATGCCGGCT
CAGGTTTCCCTTGGGTTGGCTGTTGCTTGAATCTACTCGTAAATTGATACATCACATTCGTTCTA
AGTGGGGTTGGCCACGGGCTTTTCCACAGCGGGTGTGGTAGCGGGGACTTCAGCAGTGGGGGTGG
TGCTAGCTGTCTGGGTGGGTACAGTCCGCGGCGTGGCAGAACTCGGGTTTGAGGCCTGTACGGAT
GAACTGTTCGCCGCTGGTGAATTAGACCCCAGGACCGGTTGAGGGTTGGACACCAGGACCGGTTG
TGGGCTGTCCGTCAGTTTCGCAGCATCACTGCTCGCCGTCTCAGGAGAACTCTGCTGTGAGGCCT
GTACGGATGAACTATTCACCACAGGTGAATTGGACCCCAGGACCTGTTGAGGGCTGGCCGTCAGT
TTCGCAGCATCACTGCTCGCTACCTCGGTGGTCCGTCCTGCGGGG
Right flanking sequence: Indices 61819 -- 62318
CTAAAGTTTAAACTGCTGGTCAGAGTCTGTATATAAGGCGAACTCACAGGCTGTCCATTGGTGGC
CTCAGCTTGTCTTGCGGGTGAAGCCACGAGCTGTTTATCGTTGCTCGTTGTCTGCTTTGCAGGTG
AACTCGCAGGCTGATCGTTGCTGCTTGCCGTCACTTTTACCGCAGGAGAACTCGCGTTTGAGGCC
GGTACAGGTGAACTACTCACTGATGAATTGGAGCCCAGGACCCGCTGGGGGCTGGCTGGCTGTTT
CGCAGCACCACTGCTCGCTACCTCAGTGGTCTGTTTTGCGGGTGAACTCACGGGCTGCCCATTGC
TGGCTACAGCCTGTTTGAAAGGCGAACTCGCTGGCTGACCATTGCTGGCCACGGCTTGACTTGCG
CTTGAGGCCACACGCTGTGCATTGCTGGTAACGGCTTGACAAACGAGTGAAGCTGCACGCTGTAT
ACTGCTGGTCTCGGCTTGATTCACGGGTGAAGCCACACGCTGTTC
Found at i:61389 original size:180 final size:180
Alignment explanation
Indices: 61071--61818 Score: 1003
Period size: 180 Copynumber: 4.2 Consensus size: 180
61061 GTCCCCTACT
** * * *
61071 GGCCAGAGCCTGTTGAAACGGCGAACTCGCGGGCTTTTCACTACTGGCCAGAGCCTGTCCAAATG
1 GGCCAGAGCCTGTCCAAATGGCGAACTCGCGGGCTTTCCACTACCGGCCAGAGCCTGTCCAAATG
*
61136 GCGAAGCCACACGCTGTCCACTGCTGCTCAGCGCCTGTCCAAACGGCGAACTCGCGGGCTTTTCA
66 GCGAAGCCACACGCTGTCCACTGCTGCTCAGCGCCTGTCCAAACGGCGAACTCGCGGGCTTTCCA
* **
61201 CCACTGGACAGAGCCTGTTGAAACGGCGAACTCGCGGGCTTCCCGTTACC
131 CTACTGGACAGAGCCTGTCCAAACGGCGAACTCGCGGGCTTCCCGTTACC
* **
61251 GGCCAGAGCCTGTCCAAATGGCGAACTCGCGGGCTTCCCGTTACCGGCCAGAGCCTGTCCAAATG
1 GGCCAGAGCCTGTCCAAATGGCGAACTCGCGGGCTTTCCACTACCGGCCAGAGCCTGTCCAAATG
*
61316 GCGAAGCCACACGCTGTCCACTGCTGCTCAGCGCCTGTCCAAACGGCGAACTCGCTGGCTTTCCA
66 GCGAAGCCACACGCTGTCCACTGCTGCTCAGCGCCTGTCCAAACGGCGAACTCGCGGGCTTTCCA
* *
61381 CTACTGGACAGAGCCTGTCCAAATGGTGAACTCGCGGGCTTCCCGTTACC
131 CTACTGGACAGAGCCTGTCCAAACGGCGAACTCGCGGGCTTCCCGTTACC
* *** *
61431 GGCCAGAGCCTGTCCAAATGGCGAACTCGCGGGCTTTCCACTACTGGCCAGAGCCTGTTGGAACG
1 GGCCAGAGCCTGTCCAAATGGCGAACTCGCGGGCTTTCCACTACCGGCCAGAGCCTGTCCAAATG
*
61496 GCAAAGCCACACGCTGTCCACTGCTGCTCAGCGCCTGTCCAAACGGCGAACTCGCGGGCTTTCCA
66 GCGAAGCCACACGCTGTCCACTGCTGCTCAGCGCCTGTCCAAACGGCGAACTCGCGGGCTTTCCA
* ** *
61561 CTACTGGCCAGAGCCTGTTGAAACGGCGAACTCGCGGGCTTTCCGTTACC
131 CTACTGGACAGAGCCTGTCCAAACGGCGAACTCGCGGGCTTCCCGTTACC
**
61611 GGCCAGAGCCTGTCCAAATGGCGAACTCGCGGGCTTTCCGTTACCGGCCAGAGCCTGTCCAAATG
1 GGCCAGAGCCTGTCCAAATGGCGAACTCGCGGGCTTTCCACTACCGGCCAGAGCCTGTCCAAATG
* ** * * * * * * * *
61676 GCGAA-CTCGCGGGCTTTCCACTACTTCCCAGAGCCTGTCCAAATGGCGAACTCGCTGGCTTCCC
66 GCGAAGC-CACACGCTGTCCACTGCTGCTCAGCGCCTGTCCAAACGGCGAACTCGCGGGCTTTCC
** * * * * * * ** * * *
61740 GTTACCGGCCAGAGCCTGTCCAAAAGGTGAACTCTCAGGCTGACCATTGCT
130 ACTACTGGACAGAGCCTGTCCAAACGGCGAACTCGCGGGCTTCCCGTTACC
* *
61791 GGCCATAGCCTGTCCAAAAGGCGAACTC
1 GGCCAGAGCCTGTCCAAATGGCGAACTC
61819 CTAAAGTTTA
Statistics
Matches: 501, Mismatches: 66, Indels: 2
0.88 0.12 0.00
Matches are distributed among these distances:
179 1 0.00
180 500 1.00
ACGTcount: A:0.20, C:0.34, G:0.27, T:0.19
Consensus pattern (180 bp):
GGCCAGAGCCTGTCCAAATGGCGAACTCGCGGGCTTTCCACTACCGGCCAGAGCCTGTCCAAATG
GCGAAGCCACACGCTGTCCACTGCTGCTCAGCGCCTGTCCAAACGGCGAACTCGCGGGCTTTCCA
CTACTGGACAGAGCCTGTCCAAACGGCGAACTCGCGGGCTTCCCGTTACC
Left flanking sequence: Indices 60571 -- 61070
GTACATAGAGTCCATAGTATTGTAGAGCATGAAATGCCGGCTCAGGTTTCCCTTGGGTTGGCTGT
TGCTTGAATCTACTCGTAAATTGATACATCACATTCGTTCTAAGTGGGGTTGGCCACGGGCTTTT
CCACAGCGGGTGTGGTAGCGGGGACTTCAGCAGTGGGGGTGGTGCTAGCTGTCTGGGTGGGTACA
GTCCGCGGCGTGGCAGAACTCGGGTTTGAGGCCTGTACGGATGAACTGTTCGCCGCTGGTGAATT
AGACCCCAGGACCGGTTGAGGGTTGGACACCAGGACCGGTTGTGGGCTGTCCGTCAGTTTCGCAG
CATCACTGCTCGCCGTCTCAGGAGAACTCTGCTGTGAGGCCTGTACGGATGAACTATTCACCACA
GGTGAATTGGACCCCAGGACCTGTTGAGGGCTGGCCGTCAGTTTCGCAGCATCACTGCTCGCTAC
CTCGGTGGTCCGTCCTGCGGGGGAACTCACAGGCTGTCCCCTACT
Right flanking sequence: Indices 61819 -- 62318
CTAAAGTTTAAACTGCTGGTCAGAGTCTGTATATAAGGCGAACTCACAGGCTGTCCATTGGTGGC
CTCAGCTTGTCTTGCGGGTGAAGCCACGAGCTGTTTATCGTTGCTCGTTGTCTGCTTTGCAGGTG
AACTCGCAGGCTGATCGTTGCTGCTTGCCGTCACTTTTACCGCAGGAGAACTCGCGTTTGAGGCC
GGTACAGGTGAACTACTCACTGATGAATTGGAGCCCAGGACCCGCTGGGGGCTGGCTGGCTGTTT
CGCAGCACCACTGCTCGCTACCTCAGTGGTCTGTTTTGCGGGTGAACTCACGGGCTGCCCATTGC
TGGCTACAGCCTGTTTGAAAGGCGAACTCGCTGGCTGACCATTGCTGGCCACGGCTTGACTTGCG
CTTGAGGCCACACGCTGTGCATTGCTGGTAACGGCTTGACAAACGAGTGAAGCTGCACGCTGTAT
ACTGCTGGTCTCGGCTTGATTCACGGGTGAAGCCACACGCTGTTC
Found at i:63035 original size:9 final size:9
Alignment explanation
Indices: 62994--63065 Score: 74
Period size: 9 Copynumber: 7.7 Consensus size: 9
62984 TGGTTTTGGC
62994 GGTTGCAGT
1 GGTTGCAGT
63003 -GTCTGCAGT
1 GGT-TGCAGT
*
63012 GGTTGTGGCGGT
1 GG-T-T-GCAGT
**
63024 GGTTGTGGT
1 GGTTGCAGT
63033 GGTTGCAGT
1 GGTTGCAGT
63042 GGTTGCAGT
1 GGTTGCAGT
63051 GGTTGCAGT
1 GGTTGCAGT
63060 GGTTGC
1 GGTTGC
63066 GGTGTCTACT
Statistics
Matches: 54, Mismatches: 5, Indels: 8
0.81 0.07 0.12
Matches are distributed among these distances:
8 2 0.04
9 41 0.76
10 2 0.04
11 3 0.06
12 6 0.11
ACGTcount: A:0.07, C:0.11, G:0.47, T:0.35
Consensus pattern (9 bp):
GGTTGCAGT
Left flanking sequence: Indices 62494 -- 62993
TAGTCTGCAAGTCTTAATTCTTCGTGTGAGAACCGCGCATACTGAGGAAACGCAGAGACGCAGGG
AAATACGGTGGTAGTGTCCCTTGATTCTTTAACCGATACCCACTCCTTTGGTTGGTTTGCGGTGC
CAAAAAAGGGGTACGGTCGGGCGTTTGCGTCCAGTAGAGTTCCACCCAGGCCAAAAAACGTTCGC
AAAGGCTTGCTTTTAGAAGCGAATGGCGACTTTCCGGAAGAACCATCAGCCGAAGACAGCTTTGG
AGCCAGCTTGCGAGGGACATCACCAAAGGGGCCGGGAATCTCTTTGGCTTTGAAAAATGTAGCGT
TCTCTCTCAATTTAGGGCTCAGGCTGACACTGCGACGAGGGCCCTCCCACTTTAAGGCTTCTCGA
GCCGACTCCTGACTGCCACCAAACGCTGTGCGAACATCACGGGCCGGTGAAGACTTCCGCACTGG
AACCTTGGCGTCGGCATCATTTTTGGTGGCTATGGTGGTTTTGGC
Right flanking sequence: Indices 63066 -- 63565
GGTGTCTACTGTGGTTGCGGTGTCTGAGCTGGTTGCAGTGTCTACGGTGGTTGCAGCGCCTGCCG
TGGTTGCGGTGGTGTCTTTGCCACTGGGTTGATCACGGGCTTTTTCAACCCCAGGGATTGTAGAA
GCCGGGTTGAAACTAGGCACTTGAGTGGTAGGAACCTTTGGAGTCTTAAACACATTGGTAGCAGG
CTCCTTTTGGACCTCAAAAACGCTCGTGGTGTTGGTAAGTTTCCAGTTCTTGGTAAAAATGGATT
CCTTGGTCTTGTCTGGGTTAAAAATCCCCAACGAAGGGACGGTCCCAAAGAAGCAGTTTCCAGCA
GGCTTGGGGGTCTCAATGGTCTCAGAGTTAGTCTCAGCGGAGGGAGGACTGGCCTTAGTATCAGT
TTCCTCTGTTGAATCCTTGGAACTGGAAGCGACCTTGTCAGCTTTGGTTATAGGAGCTGAGTCGG
CAGTCTTGGAGGGCTCTTGAATCGTATCGGCCTTCACAGCGGTGG
Found at i:63080 original size:36 final size:36
Alignment explanation
Indices: 63040--63141 Score: 109
Period size: 36 Copynumber: 2.8 Consensus size: 36
63030 GGTGGTTGCA
*
63040 GTGGTTGCAGTGGTTGCAGTGGTTGCGGTGTCTACT
1 GTGGTTGCAGTGGTTGCAGTGGTTGCGGTGTCTACG
* *
63076 GTGGTTGCGGT-GTCTG-AGCTGGTTGCAGTGTCTACG
1 GTGGTTGCAGTGGT-TGCAG-TGGTTGCGGTGTCTACG
* ** *
63112 GTGGTTGCAGCGCCTGCCGTGGTTGCGGTG
1 GTGGTTGCAGTGGTTGCAGTGGTTGCGGTG
63142 GTGTCTTTGC
Statistics
Matches: 53, Mismatches: 9, Indels: 8
0.76 0.13 0.11
Matches are distributed among these distances:
35 4 0.08
36 48 0.91
37 1 0.02
ACGTcount: A:0.07, C:0.18, G:0.43, T:0.32
Consensus pattern (36 bp):
GTGGTTGCAGTGGTTGCAGTGGTTGCGGTGTCTACG
Left flanking sequence: Indices 62540 -- 63039
GAAACGCAGAGACGCAGGGAAATACGGTGGTAGTGTCCCTTGATTCTTTAACCGATACCCACTCC
TTTGGTTGGTTTGCGGTGCCAAAAAAGGGGTACGGTCGGGCGTTTGCGTCCAGTAGAGTTCCACC
CAGGCCAAAAAACGTTCGCAAAGGCTTGCTTTTAGAAGCGAATGGCGACTTTCCGGAAGAACCAT
CAGCCGAAGACAGCTTTGGAGCCAGCTTGCGAGGGACATCACCAAAGGGGCCGGGAATCTCTTTG
GCTTTGAAAAATGTAGCGTTCTCTCTCAATTTAGGGCTCAGGCTGACACTGCGACGAGGGCCCTC
CCACTTTAAGGCTTCTCGAGCCGACTCCTGACTGCCACCAAACGCTGTGCGAACATCACGGGCCG
GTGAAGACTTCCGCACTGGAACCTTGGCGTCGGCATCATTTTTGGTGGCTATGGTGGTTTTGGCG
GTTGCAGTGTCTGCAGTGGTTGTGGCGGTGGTTGTGGTGGTTGCA
Right flanking sequence: Indices 63142 -- 63641
GTGTCTTTGCCACTGGGTTGATCACGGGCTTTTTCAACCCCAGGGATTGTAGAAGCCGGGTTGAA
ACTAGGCACTTGAGTGGTAGGAACCTTTGGAGTCTTAAACACATTGGTAGCAGGCTCCTTTTGGA
CCTCAAAAACGCTCGTGGTGTTGGTAAGTTTCCAGTTCTTGGTAAAAATGGATTCCTTGGTCTTG
TCTGGGTTAAAAATCCCCAACGAAGGGACGGTCCCAAAGAAGCAGTTTCCAGCAGGCTTGGGGGT
CTCAATGGTCTCAGAGTTAGTCTCAGCGGAGGGAGGACTGGCCTTAGTATCAGTTTCCTCTGTTG
AATCCTTGGAACTGGAAGCGACCTTGTCAGCTTTGGTTATAGGAGCTGAGTCGGCAGTCTTGGAG
GGCTCTTGAATCGTATCGGCCTTCACAGCGGTGGAGGCAGGCTTGTAAAGCTTTACAGGAGGCGA
ATGCCAACTTCTGACTCCCACCGAGGGCTCCAGTTGTGCCTGGAC
Found at i:63120 original size:18 final size:18
Alignment explanation
Indices: 63040--63121 Score: 78
Period size: 18 Copynumber: 4.6 Consensus size: 18
63030 GGTGGTTGCA
* *
63040 GTGGTTGCAGTGGT-TGCA
1 GTGGTTGCAGT-GTCTACG
* *
63058 GTGGTTGCGGTGTCTACT
1 GTGGTTGCAGTGTCTACG
*
63076 GTGGTTGCGGTGTCTGA-G
1 GTGGTTGCAGTGTCT-ACG
*
63094 CTGGTTGCAGTGTCTACG
1 GTGGTTGCAGTGTCTACG
63112 GTGGTTGCAG
1 GTGGTTGCAG
63122 CGCCTGCCGT
Statistics
Matches: 54, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
17 3 0.06
18 50 0.93
19 1 0.02
ACGTcount: A:0.09, C:0.15, G:0.43, T:0.34
Consensus pattern (18 bp):
GTGGTTGCAGTGTCTACG
Left flanking sequence: Indices 62540 -- 63039
GAAACGCAGAGACGCAGGGAAATACGGTGGTAGTGTCCCTTGATTCTTTAACCGATACCCACTCC
TTTGGTTGGTTTGCGGTGCCAAAAAAGGGGTACGGTCGGGCGTTTGCGTCCAGTAGAGTTCCACC
CAGGCCAAAAAACGTTCGCAAAGGCTTGCTTTTAGAAGCGAATGGCGACTTTCCGGAAGAACCAT
CAGCCGAAGACAGCTTTGGAGCCAGCTTGCGAGGGACATCACCAAAGGGGCCGGGAATCTCTTTG
GCTTTGAAAAATGTAGCGTTCTCTCTCAATTTAGGGCTCAGGCTGACACTGCGACGAGGGCCCTC
CCACTTTAAGGCTTCTCGAGCCGACTCCTGACTGCCACCAAACGCTGTGCGAACATCACGGGCCG
GTGAAGACTTCCGCACTGGAACCTTGGCGTCGGCATCATTTTTGGTGGCTATGGTGGTTTTGGCG
GTTGCAGTGTCTGCAGTGGTTGTGGCGGTGGTTGTGGTGGTTGCA
Right flanking sequence: Indices 63122 -- 63621
CGCCTGCCGTGGTTGCGGTGGTGTCTTTGCCACTGGGTTGATCACGGGCTTTTTCAACCCCAGGG
ATTGTAGAAGCCGGGTTGAAACTAGGCACTTGAGTGGTAGGAACCTTTGGAGTCTTAAACACATT
GGTAGCAGGCTCCTTTTGGACCTCAAAAACGCTCGTGGTGTTGGTAAGTTTCCAGTTCTTGGTAA
AAATGGATTCCTTGGTCTTGTCTGGGTTAAAAATCCCCAACGAAGGGACGGTCCCAAAGAAGCAG
TTTCCAGCAGGCTTGGGGGTCTCAATGGTCTCAGAGTTAGTCTCAGCGGAGGGAGGACTGGCCTT
AGTATCAGTTTCCTCTGTTGAATCCTTGGAACTGGAAGCGACCTTGTCAGCTTTGGTTATAGGAG
CTGAGTCGGCAGTCTTGGAGGGCTCTTGAATCGTATCGGCCTTCACAGCGGTGGAGGCAGGCTTG
TAAAGCTTTACAGGAGGCGAATGCCAACTTCTGACTCCCACCGAG
Found at i:67791 original size:15 final size:15
Alignment explanation
Indices: 67771--67800 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
67761 GGACTGAACA
67771 GATGGAGAGAAAAAT
1 GATGGAGAGAAAAAT
67786 GATGGAGAGAAAAAT
1 GATGGAGAGAAAAAT
67801 AGAGATACTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.53, C:0.00, G:0.33, T:0.13
Consensus pattern (15 bp):
GATGGAGAGAAAAAT
Left flanking sequence: Indices 67271 -- 67770
GGGCACACCACGGTGCTCGTGCAACACCATCAAGTCACTCACCTGGACACGGTTGCAGGTGGCGA
CAAGGTCCAGAATCACGTAGTTACCACGATTGAGCTTGATCAGGTTGGGGAACATCAACTTGACC
TCCTTGGCAAACTGCAAGAGCTTGACCAGGGGGTCGCGCGAGGTGGTGACAATGATCTTGGGGTC
GCTGAGACCCAGCAACGCCGCGTACTCGTCGTCGATCGCCACCTGCTCCGACTCGTCGTACAAGA
AGTCCTTGCGCAACGCCTCATCGTCGGCGACCTCCTTGGAGAGGGGCTTGCCCAGCGCCAACGCC
GCTTTGAGCTGCTGGCGCTTCTCGCGGAGCGTGGTCTCCTGGAGCTCCAACAGCTTGCGGTACAA
GTAGTCCCGCCGTTCTCTGGCCTGTTTTCTGAGCATGGGTGGTATATGGTGCAGCGATGAGCTGC
GGCTTTCAAACGATGCGACTGGTTGTGTGCCCGGAGGACTGAACA
Right flanking sequence: Indices 67801 -- 68300
AGAGATACTGGGTTACGTGCCCGCAAGGTGTGGAAGCCGGTTCTGGGCATTGGCAGCGCGGGGAA
GTATCCGTGGATCCCGGTTGGGATGTGATGGGTCAGCGGGTGCGGGCGGAGTCGGTTGCACGGGT
CATCACGCTGGATCTGGCGCGATTGGCGGTTCGGCGATATGGCTGGCTGCCATTGTTGACTTCCC
CACTACGACATGTCGCGAGCGTTTCGAGTCACTATTAGTAATGGATTGTCAGGCGTGAATTGTCA
GGCGCGCCAACAATAGTCGAGGAGTGTCACGCCCATTATCTGCTGCTGCCTGAATTATAAACATT
GGCACTGGGTAGGTTGCTCTGGGCAGCCACGACGAACTCCCAGTCGCAGCCCAAACTCCCAGTCA
CAGCCTAAACACCGTTCGTAGCCTACGCACTACAATGCCACAGTGTAGCCATCATGCACAATACC
CCATACTCTCCCGGGCTTGTGGCTCAGGGGGCTCCACAATACCCC
Found at i:68184 original size:19 final size:19
Alignment explanation
Indices: 68160--68200 Score: 64
Period size: 19 Copynumber: 2.2 Consensus size: 19
68150 AGCCACGACG
*
68160 AACTCCCAGTCGCAGCCCA
1 AACTCCCAGTCACAGCCCA
*
68179 AACTCCCAGTCACAGCCTA
1 AACTCCCAGTCACAGCCCA
68198 AAC
1 AAC
68201 ACCGTTCGTA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.32, C:0.44, G:0.12, T:0.12
Consensus pattern (19 bp):
AACTCCCAGTCACAGCCCA
Left flanking sequence: Indices 67660 -- 68159
AGTAGTCCCGCCGTTCTCTGGCCTGTTTTCTGAGCATGGGTGGTATATGGTGCAGCGATGAGCTG
CGGCTTTCAAACGATGCGACTGGTTGTGTGCCCGGAGGACTGAACAGATGGAGAGAAAAATGATG
GAGAGAAAAATAGAGATACTGGGTTACGTGCCCGCAAGGTGTGGAAGCCGGTTCTGGGCATTGGC
AGCGCGGGGAAGTATCCGTGGATCCCGGTTGGGATGTGATGGGTCAGCGGGTGCGGGCGGAGTCG
GTTGCACGGGTCATCACGCTGGATCTGGCGCGATTGGCGGTTCGGCGATATGGCTGGCTGCCATT
GTTGACTTCCCCACTACGACATGTCGCGAGCGTTTCGAGTCACTATTAGTAATGGATTGTCAGGC
GTGAATTGTCAGGCGCGCCAACAATAGTCGAGGAGTGTCACGCCCATTATCTGCTGCTGCCTGAA
TTATAAACATTGGCACTGGGTAGGTTGCTCTGGGCAGCCACGACG
Right flanking sequence: Indices 68201 -- 68700
ACCGTTCGTAGCCTACGCACTACAATGCCACAGTGTAGCCATCATGCACAATACCCCATACTCTC
CCGGGCTTGTGGCTCAGGGGGCTCCACAATACCCCGTTTCAGCCGCTTGCTCTATCCTGAGATCA
ATTAAATCCCGCATCGGCGTTTTCAAGCGGTACCCCGTTGCAGTATCTATGAATCGTAAATCTTG
CGTTGCTAATGATTACGGACTACAAACAGCCAAAAACAGTCACCCGAACAACGAAGAACATAAGC
CTCAACAACGCAACCTAAAAGCCATAAAACAGCCCCACAGCAGCCCCCAGCCACCCGCAAGCCCC
ATCACACCTGGGCCGTAGATTACCCCACCATTGCTCTGGCGCTTGGCGACATGTCGCACTGCCTC
AATTACGTGACGGAGCCCCTGAGGCGGCCACCGCGAAAAACACGCGGACACGCACGTGAGCTGGT
AGCCAAGGCGACCACCGGTATTTCCATCGAAGGTCATTAATTAGT
Found at i:74762 original size:17 final size:17
Alignment explanation
Indices: 74748--74825 Score: 93
Period size: 17 Copynumber: 4.6 Consensus size: 17
74738 GGGGATAGCA
74748 TGAGGTTGTGGATAGAG
1 TGAGGTTGTGGATAGAG
* * * *
74765 TGGGGGTGTGGGTTGAG
1 TGAGGTTGTGGATAGAG
*
74782 CGAGGTTGTGGATAGAG
1 TGAGGTTGTGGATAGAG
* *
74799 TGGGGTTGTGGATTGAG
1 TGAGGTTGTGGATAGAG
74816 TGAGGTTGTG
1 TGAGGTTGTG
74826 AGGTTGTGGA
Statistics
Matches: 48, Mismatches: 13, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
17 48 1.00
ACGTcount: A:0.15, C:0.01, G:0.53, T:0.31
Consensus pattern (17 bp):
TGAGGTTGTGGATAGAG
Left flanking sequence: Indices 74248 -- 74747
CGAGTTGGGGTGGTGGGTGGCCCACGACGAGTACGGCCACCTGAAGCGGTTGGCGTACCCGAGCA
CGGTGCTGATGTTTGCGGTGGAGGTGACCAACCCGTACCGCGACCTCAGCTACTACCTGATGTTC
AATGGCGGGCCGTACACGGACTTTTACCTCTACGAGGATGCCGAGGATACCGACACCGACGCCGA
CAACCACCGGGTGCTCACGCTCGTGGCCGCGCTCGACCTGGTGTTGGGCAAAATCGAGCGCAAGG
CCCAGAAGGAGTTGGTGCGCACCAAGGAGTTCCACCCGGACCTCTTTGCCAGCGCCACGCTTTTC
TTGGAGGTGGTGAAGACGGTGGACAAGGGGTCGTACTCGTTGGCGAAGCGCCACTTTGTGATGTC
GTTGTTCTTGGGCGACTACAAGATCATCGAGTCGTTGTTGAGGGACCGGTAGTTATAGAATTATA
GAACGGAGTGAATAGACGAGGTTGTGGAAGGAATGGGGGATAGCA
Right flanking sequence: Indices 74826 -- 75325
AGGTTGTGGATTTAATAAGGTTGTGAATTGAATGAGGTTGTGGATTGAATTGAGTAAGTGGATTA
TTAAGGTGGGTGGATAGAAGGTGGGTGGACAAAATGAAGGCCTGATGGACACCTGAGGATAGACA
TGCTGTGGATATTTCAACGCACAGGTCCAGATGATATCTCCAGTAATACCCTACTGAAATTTCAT
TGGTACTACCCAGTTAGCATTTCCCCCTATCACTCCACTCCACTCCTCCTCACTCCACTCTTCAC
TCGTTACTTCCGTTATAGTACATAGTCATTACTTCTTCTTCTTCTCGGGCTTCTTCTTTTTCGCC
TTGCTCTTGTCGCCCTCGCCCCAGTGGGTCTCCACCCCGGTTCCGTAGTACGCGGCCTGGACACC
GTCCACGGGAATGTCGCCCACAGCAAAGTCGGTCAGCACCAACCCCGGGTGGCCATGGCGGTGGC
ACCACGCCTCGGGCTGCGTCGGGTCGCTCTCCAACTGCGACACAT
Found at i:74792 original size:34 final size:34
Alignment explanation
Indices: 74749--74825 Score: 127
Period size: 34 Copynumber: 2.3 Consensus size: 34
74739 GGGATAGCAT
*
74749 GAGGTTGTGGATAGAGTGGGGGTGTGGGTTGAGC
1 GAGGTTGTGGATAGAGTGGGGGTGTGGATTGAGC
* *
74783 GAGGTTGTGGATAGAGTGGGGTTGTGGATTGAGT
1 GAGGTTGTGGATAGAGTGGGGGTGTGGATTGAGC
74817 GAGGTTGTG
1 GAGGTTGTG
74826 AGGTTGTGGA
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
34 40 1.00
ACGTcount: A:0.16, C:0.01, G:0.53, T:0.30
Consensus pattern (34 bp):
GAGGTTGTGGATAGAGTGGGGGTGTGGATTGAGC
Left flanking sequence: Indices 74249 -- 74748
GAGTTGGGGTGGTGGGTGGCCCACGACGAGTACGGCCACCTGAAGCGGTTGGCGTACCCGAGCAC
GGTGCTGATGTTTGCGGTGGAGGTGACCAACCCGTACCGCGACCTCAGCTACTACCTGATGTTCA
ATGGCGGGCCGTACACGGACTTTTACCTCTACGAGGATGCCGAGGATACCGACACCGACGCCGAC
AACCACCGGGTGCTCACGCTCGTGGCCGCGCTCGACCTGGTGTTGGGCAAAATCGAGCGCAAGGC
CCAGAAGGAGTTGGTGCGCACCAAGGAGTTCCACCCGGACCTCTTTGCCAGCGCCACGCTTTTCT
TGGAGGTGGTGAAGACGGTGGACAAGGGGTCGTACTCGTTGGCGAAGCGCCACTTTGTGATGTCG
TTGTTCTTGGGCGACTACAAGATCATCGAGTCGTTGTTGAGGGACCGGTAGTTATAGAATTATAG
AACGGAGTGAATAGACGAGGTTGTGGAAGGAATGGGGGATAGCAT
Right flanking sequence: Indices 74826 -- 75325
AGGTTGTGGATTTAATAAGGTTGTGAATTGAATGAGGTTGTGGATTGAATTGAGTAAGTGGATTA
TTAAGGTGGGTGGATAGAAGGTGGGTGGACAAAATGAAGGCCTGATGGACACCTGAGGATAGACA
TGCTGTGGATATTTCAACGCACAGGTCCAGATGATATCTCCAGTAATACCCTACTGAAATTTCAT
TGGTACTACCCAGTTAGCATTTCCCCCTATCACTCCACTCCACTCCTCCTCACTCCACTCTTCAC
TCGTTACTTCCGTTATAGTACATAGTCATTACTTCTTCTTCTTCTCGGGCTTCTTCTTTTTCGCC
TTGCTCTTGTCGCCCTCGCCCCAGTGGGTCTCCACCCCGGTTCCGTAGTACGCGGCCTGGACACC
GTCCACGGGAATGTCGCCCACAGCAAAGTCGGTCAGCACCAACCCCGGGTGGCCATGGCGGTGGC
ACCACGCCTCGGGCTGCGTCGGGTCGCTCTCCAACTGCGACACAT
Found at i:74832 original size:25 final size:25
Alignment explanation
Indices: 74802--74851 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
74792 GATAGAGTGG
* *
74802 GGTTGTGGATTGAGTGAGGTTGTGA
1 GGTTGTGGATTGAATAAGGTTGTGA
*
74827 GGTTGTGGATTTAATAAGGTTGTGA
1 GGTTGTGGATTGAATAAGGTTGTGA
74852 ATTGAATGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.20, C:0.00, G:0.42, T:0.38
Consensus pattern (25 bp):
GGTTGTGGATTGAATAAGGTTGTGA
Left flanking sequence: Indices 74302 -- 74801
GTACCCGAGCACGGTGCTGATGTTTGCGGTGGAGGTGACCAACCCGTACCGCGACCTCAGCTACT
ACCTGATGTTCAATGGCGGGCCGTACACGGACTTTTACCTCTACGAGGATGCCGAGGATACCGAC
ACCGACGCCGACAACCACCGGGTGCTCACGCTCGTGGCCGCGCTCGACCTGGTGTTGGGCAAAAT
CGAGCGCAAGGCCCAGAAGGAGTTGGTGCGCACCAAGGAGTTCCACCCGGACCTCTTTGCCAGCG
CCACGCTTTTCTTGGAGGTGGTGAAGACGGTGGACAAGGGGTCGTACTCGTTGGCGAAGCGCCAC
TTTGTGATGTCGTTGTTCTTGGGCGACTACAAGATCATCGAGTCGTTGTTGAGGGACCGGTAGTT
ATAGAATTATAGAACGGAGTGAATAGACGAGGTTGTGGAAGGAATGGGGGATAGCATGAGGTTGT
GGATAGAGTGGGGGTGTGGGTTGAGCGAGGTTGTGGATAGAGTGG
Right flanking sequence: Indices 74852 -- 75351
ATTGAATGAGGTTGTGGATTGAATTGAGTAAGTGGATTATTAAGGTGGGTGGATAGAAGGTGGGT
GGACAAAATGAAGGCCTGATGGACACCTGAGGATAGACATGCTGTGGATATTTCAACGCACAGGT
CCAGATGATATCTCCAGTAATACCCTACTGAAATTTCATTGGTACTACCCAGTTAGCATTTCCCC
CTATCACTCCACTCCACTCCTCCTCACTCCACTCTTCACTCGTTACTTCCGTTATAGTACATAGT
CATTACTTCTTCTTCTTCTCGGGCTTCTTCTTTTTCGCCTTGCTCTTGTCGCCCTCGCCCCAGTG
GGTCTCCACCCCGGTTCCGTAGTACGCGGCCTGGACACCGTCCACGGGAATGTCGCCCACAGCAA
AGTCGGTCAGCACCAACCCCGGGTGGCCATGGCGGTGGCACCACGCCTCGGGCTGCGTCGGGTCG
CTCTCCAACTGCGACACATCGTCGTTGATGAGATCAGCCACTTTT
Found at i:74848 original size:17 final size:17
Alignment explanation
Indices: 74826--74875 Score: 73
Period size: 17 Copynumber: 2.9 Consensus size: 17
74816 TGAGGTTGTG
*
74826 AGGTTGTGGATTTAATA
1 AGGTTGTGGATTGAATA
* *
74843 AGGTTGTGAATTGAATG
1 AGGTTGTGGATTGAATA
74860 AGGTTGTGGATTGAAT
1 AGGTTGTGGATTGAAT
74876 TGAGTAAGTG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 29 1.00
ACGTcount: A:0.28, C:0.00, G:0.34, T:0.38
Consensus pattern (17 bp):
AGGTTGTGGATTGAATA
Left flanking sequence: Indices 74326 -- 74825
TGCGGTGGAGGTGACCAACCCGTACCGCGACCTCAGCTACTACCTGATGTTCAATGGCGGGCCGT
ACACGGACTTTTACCTCTACGAGGATGCCGAGGATACCGACACCGACGCCGACAACCACCGGGTG
CTCACGCTCGTGGCCGCGCTCGACCTGGTGTTGGGCAAAATCGAGCGCAAGGCCCAGAAGGAGTT
GGTGCGCACCAAGGAGTTCCACCCGGACCTCTTTGCCAGCGCCACGCTTTTCTTGGAGGTGGTGA
AGACGGTGGACAAGGGGTCGTACTCGTTGGCGAAGCGCCACTTTGTGATGTCGTTGTTCTTGGGC
GACTACAAGATCATCGAGTCGTTGTTGAGGGACCGGTAGTTATAGAATTATAGAACGGAGTGAAT
AGACGAGGTTGTGGAAGGAATGGGGGATAGCATGAGGTTGTGGATAGAGTGGGGGTGTGGGTTGA
GCGAGGTTGTGGATAGAGTGGGGTTGTGGATTGAGTGAGGTTGTG
Right flanking sequence: Indices 74876 -- 75375
TGAGTAAGTGGATTATTAAGGTGGGTGGATAGAAGGTGGGTGGACAAAATGAAGGCCTGATGGAC
ACCTGAGGATAGACATGCTGTGGATATTTCAACGCACAGGTCCAGATGATATCTCCAGTAATACC
CTACTGAAATTTCATTGGTACTACCCAGTTAGCATTTCCCCCTATCACTCCACTCCACTCCTCCT
CACTCCACTCTTCACTCGTTACTTCCGTTATAGTACATAGTCATTACTTCTTCTTCTTCTCGGGC
TTCTTCTTTTTCGCCTTGCTCTTGTCGCCCTCGCCCCAGTGGGTCTCCACCCCGGTTCCGTAGTA
CGCGGCCTGGACACCGTCCACGGGAATGTCGCCCACAGCAAAGTCGGTCAGCACCAACCCCGGGT
GGCCATGGCGGTGGCACCACGCCTCGGGCTGCGTCGGGTCGCTCTCCAACTGCGACACATCGTCG
TTGATGAGATCAGCCACTTTTTCCTCGAGGAAAAGGTTCTCGACG
Found at i:75772 original size:15 final size:15
Alignment explanation
Indices: 75752--75786 Score: 61
Period size: 15 Copynumber: 2.3 Consensus size: 15
75742 TTGTGATGTG
75752 GTGGTGTGGTGACGT
1 GTGGTGTGGTGACGT
*
75767 GTGGTGTGGTGGCGT
1 GTGGTGTGGTGACGT
75782 GTGGT
1 GTGGT
75787 TGTGCCTCTG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.03, C:0.06, G:0.57, T:0.34
Consensus pattern (15 bp):
GTGGTGTGGTGACGT
Left flanking sequence: Indices 75252 -- 75751
CACCAACCCCGGGTGGCCATGGCGGTGGCACCACGCCTCGGGCTGCGTCGGGTCGCTCTCCAACT
GCGACACATCGTCGTTGATGAGATCAGCCACTTTTTCCTCGAGGAAAAGGTTCTCGACGTACTTT
TTGTCGATGGGCCCGCCGTCCTCCATGGCCAAGATCGGTTCAAGCGCATCGGCAATCCGCGGACA
CAGCTGGGCAAGCAGCGCAAGCCGCTCGAACGACCCCTCCGCCTGCGACTGGGGCTCCACCGTGG
CCAAAAAGTCCAAGAGGGCGTTGTTGCGTCGTTTGAGGTAGTTTAACGTTTGGCGACTGGCGTTT
TCGGTGTCGAACAACGTGGTTGCGGTCTGTTCCACCACCGCAAACCGTTGCTGGAGCTTTTTGTA
GGTGTTGTAGTAGTCGACCGTCCCGTCGGCCGCGACCACGGGCTCGGTGTCCGGCAACTCGTCCT
GGGATGGTAGACTGAACATGGGCTGTGTGGTGTGGTTGTGATGTG
Right flanking sequence: Indices 75787 -- 76286
TGTGCCTCTGGTCGTGTGGACGGCTCGAGGATGCGGTAGGTCTTGTGGGCCGTGTGCTGCTGGTG
GTGAGTTCGCGGAGTGTATAGAAGATGGGTAAAGGAAGAGAAGGGAAGAAAGAGAGATGAAAGGG
GAGAAGAAGGGGAAGAAAGGAGAAGAAAGACACGAGTGGAGGAAAGGAGGAAATTGGTTAATGTG
GAAGAGAAAAGTTTCTTGTATTTTTCTCTTCCATATAGTTTGTTACCAACAAATGGCTCCGTATG
GTATCCACACAATGATAGTCCGTGTTGAAAAATACATCAATTCTCCCTAGTTACATTCAATGCAA
CAAAACCCAGGAAGCTACCCACTCTTCAACCCCTTAACACCACCTCTCCCCGCTTCTACCTCCCG
TCCTAGTCACCATGTATACCTGCTACCTTGCCTATTGTCTATGCTATTGCCACGCCCTACCACTA
TGCTAATGTTAAAGTGTGCGGAGAATCTCCAAACCCTGGCACCGC
Found at i:75941 original size:10 final size:10
Alignment explanation
Indices: 75886--75945 Score: 52
Period size: 10 Copynumber: 5.8 Consensus size: 10
75876 ATGGGTAAAG
75886 GAAGAGAAGG-
1 GAAGA-AAGGA
75896 GAAGAAAGAGA
1 GAAGAAAG-GA
*
75907 GATGAAAGGGGA
1 GAAGAAA--GGA
*
75919 GAAG-AAGGG
1 GAAGAAAGGA
75928 GAAGAAAGGA
1 GAAGAAAGGA
75938 GAAGAAAG
1 GAAGAAAG
75946 ACACGAGTGG
Statistics
Matches: 41, Mismatches: 4, Indels: 10
0.75 0.07 0.18
Matches are distributed among these distances:
9 9 0.22
10 18 0.44
11 8 0.20
12 5 0.12
13 1 0.02
ACGTcount: A:0.53, C:0.00, G:0.45, T:0.02
Consensus pattern (10 bp):
GAAGAAAGGA
Left flanking sequence: Indices 75386 -- 75885
CGATGGGCCCGCCGTCCTCCATGGCCAAGATCGGTTCAAGCGCATCGGCAATCCGCGGACACAGC
TGGGCAAGCAGCGCAAGCCGCTCGAACGACCCCTCCGCCTGCGACTGGGGCTCCACCGTGGCCAA
AAAGTCCAAGAGGGCGTTGTTGCGTCGTTTGAGGTAGTTTAACGTTTGGCGACTGGCGTTTTCGG
TGTCGAACAACGTGGTTGCGGTCTGTTCCACCACCGCAAACCGTTGCTGGAGCTTTTTGTAGGTG
TTGTAGTAGTCGACCGTCCCGTCGGCCGCGACCACGGGCTCGGTGTCCGGCAACTCGTCCTGGGA
TGGTAGACTGAACATGGGCTGTGTGGTGTGGTTGTGATGTGGTGGTGTGGTGACGTGTGGTGTGG
TGGCGTGTGGTTGTGCCTCTGGTCGTGTGGACGGCTCGAGGATGCGGTAGGTCTTGTGGGCCGTG
TGCTGCTGGTGGTGAGTTCGCGGAGTGTATAGAAGATGGGTAAAG
Right flanking sequence: Indices 75946 -- 76445
ACACGAGTGGAGGAAAGGAGGAAATTGGTTAATGTGGAAGAGAAAAGTTTCTTGTATTTTTCTCT
TCCATATAGTTTGTTACCAACAAATGGCTCCGTATGGTATCCACACAATGATAGTCCGTGTTGAA
AAATACATCAATTCTCCCTAGTTACATTCAATGCAACAAAACCCAGGAAGCTACCCACTCTTCAA
CCCCTTAACACCACCTCTCCCCGCTTCTACCTCCCGTCCTAGTCACCATGTATACCTGCTACCTT
GCCTATTGTCTATGCTATTGCCACGCCCTACCACTATGCTAATGTTAAAGTGTGCGGAGAATCTC
CAAACCCTGGCACCGCTCCTCAAAGAGCTTCGCCAACTCGCCCACCTTGCGCCCGCGGATCACCG
GCTTCTTGGCCGGCACCGGAGGCGGCAGCGGTTTGGGCTGTGCCGCCGGGCGGGCCTCGTCTGCT
ACCCGGTACTTGTGGTTGGGGAGGTCCAATGCGATGTTGCTGACG
Found at i:78788 original size:15 final size:13
Alignment explanation
Indices: 78761--78787 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
78751 CATAGAGACG
78761 GTGAACACGGAGA
1 GTGAACACGGAGA
78774 GTGAACACGGAGA
1 GTGAACACGGAGA
78787 G
1 G
78788 ATGGAATTGG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.37, C:0.15, G:0.41, T:0.07
Consensus pattern (13 bp):
GTGAACACGGAGA
Left flanking sequence: Indices 78261 -- 78760
GAATGGTGGGTGGTGTGTCTGACAGGGTCTAACCGGGCTAGGGGTTAGTTTAGAGACGTGCTAGC
TAATGTCTACTACGCTGGAAGACGCCACCGTGGACCAGCTGACGCGTCAGCGTCCTGATCAGATC
ACGGTTTCTTTTGTCAGGGCGGCCTATTTGGGAGAAATGCGCGACGACCACGGACGCGGTGGTTG
CGTGGGCTGACTCGGGGGCCGCGGGCCGTGGGGTGCTCGGGATGTGGTGGAGCGTTTGGTGGCTA
CGTAGGGATTGGTTGCGGTGGGTTGAACGGGGAGGCGTGGGTATGGACGCGGTTGGCGGTGGTAT
GACTCCTATTGTTGTAGAGATTGTTCCTGACGAGATCGTACGCGGTGAGCCGCAAAGACAATGGT
GTTGGCTGTGGCGACCGCGTTGGGGTATCTGCGGTGTTCGGGACCTATCGGGATTTAAGCTTTTT
GGTGCCTTTGTGTATCTGGTTTGGGCAGTGAAGCGCATAGAGACG
Right flanking sequence: Indices 78788 -- 79287
ATGGAATTGGGCTTATTCCAAGGCTTGAGCGGAGATGAAGAGGAGTCCCTACTAGCGTCTTACTC
TCTTCGTGTACCGACACGTAGTGACCTCTGCCATGTCGTCACTAAGCTTTCATTGTTTCATCGCA
CTACTCATCTTCTGCGACGACTCACCTTTCCCCAGTCACCACCTCATACTAATTTTCTCTGACGT
CATACCCTGGGTCAATAGTGAAGAGACAAAGGACCTTTCTCAACCTCACATATCTCCACATATCT
CTTCCCGTATGGCAGACCCATCGCTTCACCTTCCTCACGTACCTATCTCATGTACATTCAATCCA
CCTACTCATCCACCATCCGGAACCCTCTTCTACTCATCCAACACCCACGCACTCTTGTAATCATA
TCCACCCACTGTTGTACTCATCCACCGCCACCCACTCCTCTAAACACTCCATCTCCTACTCTCCT
ATCCCATTCCGTATATTCCTATCTACTATTAATCTCGTGGACATG
Found at i:79182 original size:22 final size:22
Alignment explanation
Indices: 79157--79198 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
79147 CATCCAACAC
*
79157 CCACGCACTCTTGTAATCATAT
1 CCACCCACTCTTGTAATCATAT
* *
79179 CCACCCACTGTTGTACTCAT
1 CCACCCACTCTTGTAATCAT
79199 CCACCGCCAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.24, C:0.36, G:0.10, T:0.31
Consensus pattern (22 bp):
CCACCCACTCTTGTAATCATAT
Left flanking sequence: Indices 78657 -- 79156
TGTGGCGACCGCGTTGGGGTATCTGCGGTGTTCGGGACCTATCGGGATTTAAGCTTTTTGGTGCC
TTTGTGTATCTGGTTTGGGCAGTGAAGCGCATAGAGACGGTGAACACGGAGAGTGAACACGGAGA
GATGGAATTGGGCTTATTCCAAGGCTTGAGCGGAGATGAAGAGGAGTCCCTACTAGCGTCTTACT
CTCTTCGTGTACCGACACGTAGTGACCTCTGCCATGTCGTCACTAAGCTTTCATTGTTTCATCGC
ACTACTCATCTTCTGCGACGACTCACCTTTCCCCAGTCACCACCTCATACTAATTTTCTCTGACG
TCATACCCTGGGTCAATAGTGAAGAGACAAAGGACCTTTCTCAACCTCACATATCTCCACATATC
TCTTCCCGTATGGCAGACCCATCGCTTCACCTTCCTCACGTACCTATCTCATGTACATTCAATCC
ACCTACTCATCCACCATCCGGAACCCTCTTCTACTCATCCAACAC
Right flanking sequence: Indices 79199 -- 79698
CCACCGCCACCCACTCCTCTAAACACTCCATCTCCTACTCTCCTATCCCATTCCGTATATTCCTA
TCTACTATTAATCTCGTGGACATGCTAAAGGCCTCAGGCCGTAAAATGCAAAGCTGGCTCGCGCC
TCACTCGACGGCAGCCGAGGTGCGGTAGTTCGAGTAGTCGAGGGTGATCAAGTCGCCAAGCACCC
CCTGCTGCGCCACAAGCTCCTGCTGCAGCTGGTGGGCCTTCAAAAACTCAATCACCGCGTCAAAC
TTGCCCCGGGCAAACACGTTGTGCCGCAGCAACCGGTCCAACACCGCCATCTTGGTGAGCTGGCG
CGCCTTGGCCGCCTGCAGCGCGTCGTCGCCGTCGCACAGCACCACCAACATCCAGGTGTTGGCCA
ACTGCTCGTACGCGGTCTGGCGGGTGAACTGAAACTCAAGCAGGGTAAAGTTGGGCAAGTCGTCA
AGCACCAGGGTGGCGGCCTCGAGAAACGCCAACAGATTGCACACG
Found at i:81623 original size:6 final size:6
Alignment explanation
Indices: 81614--81647 Score: 68
Period size: 6 Copynumber: 5.7 Consensus size: 6
81604 GGCCCTGGCC
81614 CTGATT CTGATT CTGATT CTGATT CTGATT CTGA
1 CTGATT CTGATT CTGATT CTGATT CTGATT CTGA
81648 CCAAACGGGT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.18, C:0.18, G:0.18, T:0.47
Consensus pattern (6 bp):
CTGATT
Left flanking sequence: Indices 81114 -- 81613
ACGCATCTTCGGGTTCTGATTCAGGTTCTGGTTTAGTTCCGGGTTCGGGCTCGCGGCCGGACTAC
GGATTACACAGACCAATTGGATCAATTCTCAAAACAGGATTTAAATCTACCCACCCTAAGATCCT
CATTATCTCTTTTACTCATGTTATCGCACTATTTGTTGGCCATTTTCGCGGGGTGGGCGAGTCTT
ACGCTTATTCTGGTTCCGGTTCCGGTTCTGGTTGGGTTGACTAAACGGGTTGGGGCTCGTAACTA
GACATATGGATTTAACTAACTGAGTGGGCACCTCTAGTTCTTGTTGTGCTCGGGTTCGGGCTCGC
GGCCAAACCTACCGTATTAACCAGCTAACTGGGCACCAGTTTCCCACCCTACACTCACTCATTAT
CTCTTTTACTCATGCTATATTACACTCTATTCCTTAGCCTTTTTCGCGGGCTGGGTCGAGCCCTG
GTTGCCACGCTTCTTCAGATTCTGGTTCTGGTTCTGGCCCTGGCC
Right flanking sequence: Indices 81648 -- 82147
CCAAACGGGTTCGGGGTCCCCGCAGGACTCGACCCAAACTGGAACCCCGTCGCAGGAGCCGCCTT
CCCAAAACCACCAAATCCACCGCTGCCAAACGCCAGAGGCTGCGGCGTGTCGGGCGTCAGCGCCG
GCTCCGACCCCGCCTTCTCCTTCTCCACCCGGTCGAGCTTCTTCTGGAGCATCTTCATCTTCATC
TCAAACTGCTGGCGCGTCTGTGCCGTCACCTTCTCCTTCTCCTCCTCCAACTGCTTCGCGTGGGC
CGCGTTGGCGTCCGCCAACTGCTTCTTCAACTGGGCCACCTCGTCCGCGCTGGCCAGGGGCTCGT
TGCCCGCCTTGGCCGCGTCGTTGACCTTCGCTGCGTCGTCCCGCGCCTGCTCCGCGTCGGCCTGG
GCCTTGGCGAGCTCGGCGTTGGCCTCGGCCAACTTCTTCTCCACCTCGCCCGTCTTGGCCGTGAG
CTCCTCCACCGTGGCGTTGAGCTTGCCGATGCGCTCGTTCTGCGA
Found at i:85745 original size:19 final size:21
Alignment explanation
Indices: 85709--85760 Score: 68
Period size: 21 Copynumber: 2.5 Consensus size: 21
85699 GGGCCAACTG
85709 GGCCTCGGCGGTGTCTCGCGC
1 GGCCTCGGCGGTGTCTCGCGC
* * *
85730 GGCCTCGGCGGTCTCGCGGGC
1 GGCCTCGGCGGTGTCTCGCGC
*
85751 GGCCTGGGCG
1 GGCCTCGGCG
85761 TCCCGGAGCT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.00, C:0.37, G:0.48, T:0.15
Consensus pattern (21 bp):
GGCCTCGGCGGTGTCTCGCGC
Left flanking sequence: Indices 85209 -- 85708
TCGTTCTCGGCCGCCTGGCGGTCGCGGTGGGCTGCCCGCTCGGCGTCGCCCGCCGCCATGATCTG
CTCCTGGAGCCGCCGCTGGGTGTCGGCAAGCAGCTGGGTGAGCTGGTGGTTGGCCAGCTCGAGCT
CGGCCACCCGGGCGTCGCTGCGGGCCTGGGCGGTGGCGGCGGCCAGCTGCTGCTGCTGATGTTGG
CCCACCACCTCCGCGAACCGCTTCTGGTGGTCGGCGAGCTCCTGCTTGTGCCACGCCAAGTCCTG
TTCGAGGTAGCCCACCTTCAGCGTCGCCTTCATTGCTGCGAGCTCGTGGGCAAATCCCAGCAGCT
CCGCGTCCGCCAACTGCTTGGCGAGCTCGTTGAGCCGCTGGCTCTGGCGCACCTGGGTGGCGGCG
GCGGCGTCCAACTGCTGCTGGAGCTGGAGCACTTCTTCGCCGTGGTGCAGCCGGGCCCGGGTCTC
CAGCGCTGCCGCGTCCGCTGCGTCCTGTTTGGCCCGGGCCAACTG
Right flanking sequence: Indices 85761 -- 86260
TCCCGGAGCTCGTGCACGGTGGCCTCTGCCGCCAGCAACCGCGCTGCGAGCTGCTCTGTGTGTTT
GGATGCCTGTTGCTGGCAGTTTTCGAGCTGGAGCTGCAAGAACTCGGTCTCCAGCGCCATCTGGG
CCGCGGTCGACAGCTTGGCGGCGATGGCGTCGAGCACCGCCGGCGGGAGCTGGCCCACCGTGTCG
TGGTCCACCCCGAGGAACTGTGCCACCACCGCTTCCGCTGCCTCGGGCTCGGGCTCGGGCTCGTC
CTGGGCCACGGGGATCTGTTTCGGGGTCAGGATCGAGTCCACGTCCTTCAACGGCGGAATGCCCT
TGACGGGGGTCTGGACAAAGTGCTCCGAGATGAAGGTGTGCTCGTGCTCCAGCATCGGCTCGTCC
TCGACGAGCTCGGGGTCGCCGTGGGGCGACTGCGGCGCGTTGGCCGCGGTTTCCAGCAAGATGTG
GCCGTGGCCGTCCTCCTCGACCTCGAGCACGGCGTCGGCGGCGTT
Found at i:86651 original size:15 final size:15
Alignment explanation
Indices: 86631--86692 Score: 79
Period size: 15 Copynumber: 4.1 Consensus size: 15
86621 GGGTGTAGGT
86631 TGTTTTAGGTGTGGG
1 TGTTTTAGGTGTGGG
*
86646 TGTTTTAGGTATGGG
1 TGTTTTAGGTGTGGG
*
86661 CGTTTTAGGTGTGGG
1 TGTTTTAGGTGTGGG
**
86676 TGTAGTAGGTGGTGGG
1 TGTTTTAGGT-GTGGG
86692 T
1 T
86693 TTGTTTTGTA
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
15 34 0.85
16 6 0.15
ACGTcount: A:0.10, C:0.02, G:0.47, T:0.42
Consensus pattern (15 bp):
TGTTTTAGGTGTGGG
Left flanking sequence: Indices 86131 -- 86630
GCTCCAGCATCGGCTCGTCCTCGACGAGCTCGGGGTCGCCGTGGGGCGACTGCGGCGCGTTGGCC
GCGGTTTCCAGCAAGATGTGGCCGTGGCCGTCCTCCTCGACCTCGAGCACGGCGTCGGCGGCGTT
GTCGTGCGCGGGTTCAGCGTCAATGGGGGCTGCCTGGTCCAAGTCGATGTCGATGGCGTCGCCGG
CGTCGCCAATGGCGTCGTTGGCGCCCAGGTTTTCGGGGGATCCGCCCAGGGGGGTCGGTTCCGCC
ACGGGTGGGTCGCCAGCATGGGTGTTTTGGTCGTTGTCCTCGCTCGACCCGGTCATCGTGAGGCA
ATGGCTGGTACCAGTGGTTGGTTTGTTCGCACCGTGCGGCTTAGCAAGTAGGAATGAGAACGAGG
GAGCGAGGAGAACGAGGAACGAGAACGAGAAGAAAGGAGGAAAAAGAGAGGAACGAAGAGGAAAG
AAGGGAATAAAGAAGTGGGTGGAAGGAATGATGTAGGGTGTAGGT
Right flanking sequence: Indices 86693 -- 87192
TTGTTTTGTATGAGTGGTAGTAAGTAGTTTTGAGTGGAGAGTATTGTTAGTGGGTGGTTACAAAA
TGAGTGTTGGCGGAACGGAATGTTCCGCTTGGTGGTGTGGTGGTTTTGATGCTATGATAATGCTA
TGGTGGTGTGTATCGATTTGATTTAGTGTTTACCCGGTTTACTCAATGATGTATACTATAGACTT
GTATTTCAGTCTCCATTCCGTTAATCTTTTATATTTCACAGCGATTCTGCAGTTTACTGCCAAAT
CCACCATGCACCATTACGCCAACAGTCGTATATTTACAATTCATAGAGCCTTTGGCATTCCTCAA
TCCATTCTACACTTGGAGTGGTCAGCCTGCTCCATGTGGTCCTCAATCCGGCTCAACACATCGCC
ACACTTGGCCGAAATGTACATGTAGTACTCCTCGTCGTGCTCGTCAGGGTCCACCAACGCGTGCT
GGTCAAACCCACACTCGATCGCGTGGAACCGGTACACGTTGCCCT
Found at i:87572 original size:10 final size:10
Alignment explanation
Indices: 87513--87575 Score: 56
Period size: 10 Copynumber: 6.3 Consensus size: 10
87503 GCTACGGTCT
*
87513 CTCTCGGTAC
1 CTCTCGGTGC
*
87523 CTCTTGGTGTC
1 CTCTCGGTG-C
*
87534 C-CTCGGTGT
1 CTCTCGGTGC
*
87543 CTCTCAGTGC
1 CTCTCGGTGC
*
87553 CTCTCAGTGC
1 CTCTCGGTGC
*
87563 CTCTTGGTGC
1 CTCTCGGTGC
87573 CTC
1 CTC
87576 CCTCCTCACA
Statistics
Matches: 43, Mismatches: 8, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
9 1 0.02
10 40 0.93
11 2 0.05
ACGTcount: A:0.05, C:0.37, G:0.24, T:0.35
Consensus pattern (10 bp):
CTCTCGGTGC
Left flanking sequence: Indices 87013 -- 87512
CTCAATCCATTCTACACTTGGAGTGGTCAGCCTGCTCCATGTGGTCCTCAATCCGGCTCAACACA
TCGCCACACTTGGCCGAAATGTACATGTAGTACTCCTCGTCGTGCTCGTCAGGGTCCACCAACGC
GTGCTGGTCAAACCCACACTCGATCGCGTGGAACCGGTACACGTTGCCCTTGGTTTGCACCACGT
AAAAGTCACACAACAGCGCGTCCATCCTGTTGTGGACGTATTCCTCCACCTCGGAGGGGTCGGTG
TACTCAACCACGATCCAGTCGCGGTAGGTCTCGTCAATGGGCAACCCCTTGTAGTTGAAAAAGGT
CCACCCAGACTCCTGCGCCTCAGACTGCTCAATGTCAGACATGCTGATGCTACGAATTGGCGCTA
TTTATGGGTCCACTCTTCGTAAACCTTAACCCGCGAGACGTAAAGTGCCTCACACCAGCAAGCAC
TGTCTATGAGCGGTTACTAGCATACTATCCACCACGCTACGGTCT
Right flanking sequence: Indices 87576 -- 88075
CCTCCTCACACCTCTTTCAGCTTTTCACGTGATCTTAGGGTTGATAACCCTCACACAACCCAGTG
TGCGCGCGCGGGCTCCGCACCATGCCGCACCCGCGCCCACCGTCGTTTTCGCATAGTAGAAAAAT
CTGTACAAAATTTTTCACCAATAGCTAACAATGATTGAACCCTCGTTGAAGGCTCTTGCCTCCAA
GTTCAACTGTGAGAAGTCGATCTGCCGTAAGTGCTACGCCAGACTTCCCCCCAGAGCCACCAACT
GCAGAAAGAGAAAGTGCGGTCACACCAACCAGTTGAGACCCAAGAAGAAGCTTAAGTAATGGTTT
TACCATTGTCGTTTGCCGTTGGGGTGGATTTTGTACCAAAATACACATTAATATAGACCCGGTGG
ATGCTGCTGAGACGAGACGCTGACGACGCTGAGGATGTGGGAAGGATTCCATGAGAAGAGCCCAA
GGTCAAGGGACGATCCTGTTGAAGGCCACCCACACCCAGAATACG
Found at i:88597 original size:12 final size:12
Alignment explanation
Indices: 88564--88600 Score: 65
Period size: 12 Copynumber: 3.1 Consensus size: 12
88554 ACAAGGCTTA
*
88564 AGCCCCGTCACC
1 AGCCCCGTCGCC
88576 AGCCCCGTCGCC
1 AGCCCCGTCGCC
88588 AGCCCCGTCGCC
1 AGCCCCGTCGCC
88600 A
1 A
88601 ACACGTAGCC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 24 1.00
ACGTcount: A:0.14, C:0.57, G:0.22, T:0.08
Consensus pattern (12 bp):
AGCCCCGTCGCC
Left flanking sequence: Indices 88064 -- 88563
ACCCAGAATACGTCAGTTGCCACTCGAAGCACGTTCAGATTGTAGAGTAGTCGAAGGTGGAGTAT
AGAAGTGGAGTAAGGTGGGTACGATGGGGTTTGAGTCAAACCGAGGATAGAAGATGGTAAGAAGA
GGCTTTTCCAACTACTGGCTGTGTTCACCAGCTTGTCACTACCCTTTTTACTACCTTGTTCATCA
CCACCTGTACCCTCACTCACTCACCCCATCAACTGCCCCATTTGATGATCGCCCCATCTGCGAGT
GAAGTCCACCAATTAGGAAGAGAAGGATCTGGAACATTCGTATCCACTTAAATCATTGTTTCCTA
TAGAACGAAACACGCCTAAAAACCATCTCCCTAGTATCTCGTGCTCACATTTCGTACTGACGCCA
TCTCTCGTCCTGTAGCTAACTCCGGTTCCCGCCACTCGCAGCACCCTACGGCACTTTTGCGCGTC
CGGACTTATCACGCGGTGGGTCTCGACACGTCAAAACAAGGCTTA
Right flanking sequence: Indices 88601 -- 89100
ACACGTAGCCACCCTCACGATTCAAACTCTCCCAGCAAACTCCTCGAACCTGACCCCCTCCACCA
CCGTGTCCGTTATCATGCTGGCCACGAAAAATAATCCAGATAAACACAGGATTACGACGCGGCTG
TCGGGTCCGGTTGCTAATCGGATCTCACCACCAAAACCCCCATTAAGGTTTGGGGCCGCTAGAGG
GCAATTGCGGGGCTGGTGGATCTCGTTTGTGCCCTGGCCGAGGTGCGTCCACAGGCACGGTTTGA
GGCTTGGTGGCCTGTCTAAATATAGGGACCCACGAGCCGACGCCAGATCTTCTACAGCGGTAAAT
CCCCCACCACCCCACTTATCTCACTATCTCACTACACCCAAAACCCCTTAAACTCTTCCGAATGC
CTCTAATGCCTCTCCCAATGCTTCTCCCAATGCCTCTACCCACCGTCTTTTCTCTCCCGGGAATT
GCCAGCGCCGTGTCTGGGCCTCGGTAGCCCGCGAAATGTCGTCGC
Found at i:89016 original size:12 final size:12
Alignment explanation
Indices: 88995--89032 Score: 58
Period size: 12 Copynumber: 3.1 Consensus size: 12
88985 GAATGCCTCT
88995 AATGCCTCTCCC
1 AATGCCTCTCCC
*
89007 AATGCTTCTCCC
1 AATGCCTCTCCC
89019 AATGCCTCTACCC
1 AATGCCTCT-CCC
89032 A
1 A
89033 CCGTCTTTTC
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
12 19 0.83
13 4 0.17
ACGTcount: A:0.21, C:0.45, G:0.08, T:0.26
Consensus pattern (12 bp):
AATGCCTCTCCC
Left flanking sequence: Indices 88495 -- 88994
CACCCTACGGCACTTTTGCGCGTCCGGACTTATCACGCGGTGGGTCTCGACACGTCAAAACAAGG
CTTAAGCCCCGTCACCAGCCCCGTCGCCAGCCCCGTCGCCAACACGTAGCCACCCTCACGATTCA
AACTCTCCCAGCAAACTCCTCGAACCTGACCCCCTCCACCACCGTGTCCGTTATCATGCTGGCCA
CGAAAAATAATCCAGATAAACACAGGATTACGACGCGGCTGTCGGGTCCGGTTGCTAATCGGATC
TCACCACCAAAACCCCCATTAAGGTTTGGGGCCGCTAGAGGGCAATTGCGGGGCTGGTGGATCTC
GTTTGTGCCCTGGCCGAGGTGCGTCCACAGGCACGGTTTGAGGCTTGGTGGCCTGTCTAAATATA
GGGACCCACGAGCCGACGCCAGATCTTCTACAGCGGTAAATCCCCCACCACCCCACTTATCTCAC
TATCTCACTACACCCAAAACCCCTTAAACTCTTCCGAATGCCTCT
Right flanking sequence: Indices 89033 -- 89532
CCGTCTTTTCTCTCCCGGGAATTGCCAGCGCCGTGTCTGGGCCTCGGTAGCCCGCGAAATGTCGT
CGCGGCACCACCGGCCCCCACGCTTGCTCTCCGTGCCACCCGTCTCGCCCGTCCACCTCGAGGTG
TGCCCGAAGCCCTCGCCCGAGCGGGGCTCTGCGGACGCACACCTGAAACCGGCGCCACCTTCTGG
GACAAAACCACGGTCTAGCGGCAAGAAAAGCACTATACAACGGAGCCGGTGTCGCGGGCCAGCAA
CCCGCCACCACTCGAGCCAAAACCACCCACGGCACCTAAACACCCCTCCCGTAAACCCCACTGCC
TCTACAGCCCTCTACAGCCCGCTCCGTGCGCACAGGCCCACACCCGTCGACACGTCTGTGCTCAC
CACGCACAATGCGACCGCGGCCTACCACCCGGTCCACCCAGAAAACCACACCAAACCTAAACCAC
ATCCCACCCTTCCCACCACCCGCTCTACCACCCCTTCTCACCACC
Found at i:103836 original size:12 final size:12
Alignment explanation
Indices: 103815--103860 Score: 74
Period size: 12 Copynumber: 3.8 Consensus size: 12
103805 CACCGAGTCT
103815 AAGCCTGAGGAC
1 AAGCCTGAGGAC
*
103827 AAGCCCGAGGAC
1 AAGCCTGAGGAC
*
103839 AAGCCTGAGGAG
1 AAGCCTGAGGAC
103851 AAGCCTGAGG
1 AAGCCTGAGG
103861 CTCCCTCCCC
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 31 1.00
ACGTcount: A:0.33, C:0.24, G:0.37, T:0.07
Consensus pattern (12 bp):
AAGCCTGAGGAC
Left flanking sequence: Indices 103315 -- 103814
TGCCCGCCAAAACCACCGCTTTGCACGTGTCGTCCCTTCGACCCTGCCCCTTTCTGATGCCGTAC
CAATGCAGTAAAATACTTATCGGCAGGTCAGGGGTGCGCACGACCCTCCTGCGAGGTTAACCACT
GGGATATAAAGAACTGAGGCCGCCACCGTAGAACCACCGCATTTCAGCTTAGCTAGTCACTCCTT
TCTTGCCCAAGCACACAGAACCCCGTGTTCGTTCCTTTCCTTCGTCGGTCTATCCCTTCCCTTCC
TTTACAATGAAATTTTCCACCGTTCTTTTATCCACGCTTTTGTCGCTGCTTGTGGCTTCAGCCCC
CGCCCCCAAGGTCAAGGTGGTGTATGTGACCGAGTATCTTACTGTTCAGAAGACCTCCGGCACTG
CGGCCCCCACCTTGATCACCCCCACCCCTTCCACTCCTTCTGAAACGCTTATTGATGCTGACAAT
GTTGCTGGCGACCAAAAGGCTGCCCCTGCTGAGACCACCGAGTCT
Right flanking sequence: Indices 103861 -- 104360
CTCCCTCCCCCACTTCGGATGCTCCTGCCCCCACTTCTGAGGCTCCCGAGCCCTCGTCCGAGGCC
CCCAAGCCTTCGTCTGACGGCGGTGACAAGGGTCACGGTAAGGAGTACACCGGTAAGGCCACTTA
CTACGACCCTGGTATGGGTGCTTGTGGCCACGAGAGCTCTCCCGATGAGTTGATTGTTGCCCTTG
ATCTTGGTGTGTTCAACCAGAAGCTCAAAGAGTCTGGCGAGGTGAACCCCAACAAGAACCCCATT
TGTGGCAAGAAAATCGAGGCTACCCACGAGGGTAAGTCTGTTGTTGTTACTGTTGTCGATGCCTG
CCCCGGTTGCGGTAAGAACGGTCTTGACTTGACCAAGAAGGCGTTCGCCAAGATCGGTGACGTCG
ACGACGGCCACTTCGAAGTGAACTGGAAGTGGGTTGACGAAGAGTAGAGTTCTGGGAACTTCGAA
ACTCGCCCCCTTCCATGATATATACCTTTTTTTCTCTTCTCCTCC
Found at i:103891 original size:21 final size:21
Alignment explanation
Indices: 103857--103906 Score: 66
Period size: 21 Copynumber: 2.4 Consensus size: 21
103847 GGAGAAGCCT
103857 GAGGCTCCCT-CCCCCACTTCG
1 GAGGCT-CCTGCCCCCACTTCG
* *
103878 GATGCTCCTGCCCCCACTTCT
1 GAGGCTCCTGCCCCCACTTCG
103899 GAGGCTCC
1 GAGGCTCC
103907 CGAGCCCTCG
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
20 3 0.12
21 22 0.88
ACGTcount: A:0.10, C:0.48, G:0.20, T:0.22
Consensus pattern (21 bp):
GAGGCTCCTGCCCCCACTTCG
Left flanking sequence: Indices 103357 -- 103856
CCTGCCCCTTTCTGATGCCGTACCAATGCAGTAAAATACTTATCGGCAGGTCAGGGGTGCGCACG
ACCCTCCTGCGAGGTTAACCACTGGGATATAAAGAACTGAGGCCGCCACCGTAGAACCACCGCAT
TTCAGCTTAGCTAGTCACTCCTTTCTTGCCCAAGCACACAGAACCCCGTGTTCGTTCCTTTCCTT
CGTCGGTCTATCCCTTCCCTTCCTTTACAATGAAATTTTCCACCGTTCTTTTATCCACGCTTTTG
TCGCTGCTTGTGGCTTCAGCCCCCGCCCCCAAGGTCAAGGTGGTGTATGTGACCGAGTATCTTAC
TGTTCAGAAGACCTCCGGCACTGCGGCCCCCACCTTGATCACCCCCACCCCTTCCACTCCTTCTG
AAACGCTTATTGATGCTGACAATGTTGCTGGCGACCAAAAGGCTGCCCCTGCTGAGACCACCGAG
TCTAAGCCTGAGGACAAGCCCGAGGACAAGCCTGAGGAGAAGCCT
Right flanking sequence: Indices 103907 -- 104406
CGAGCCCTCGTCCGAGGCCCCCAAGCCTTCGTCTGACGGCGGTGACAAGGGTCACGGTAAGGAGT
ACACCGGTAAGGCCACTTACTACGACCCTGGTATGGGTGCTTGTGGCCACGAGAGCTCTCCCGAT
GAGTTGATTGTTGCCCTTGATCTTGGTGTGTTCAACCAGAAGCTCAAAGAGTCTGGCGAGGTGAA
CCCCAACAAGAACCCCATTTGTGGCAAGAAAATCGAGGCTACCCACGAGGGTAAGTCTGTTGTTG
TTACTGTTGTCGATGCCTGCCCCGGTTGCGGTAAGAACGGTCTTGACTTGACCAAGAAGGCGTTC
GCCAAGATCGGTGACGTCGACGACGGCCACTTCGAAGTGAACTGGAAGTGGGTTGACGAAGAGTA
GAGTTCTGGGAACTTCGAAACTCGCCCCCTTCCATGATATATACCTTTTTTTCTCTTCTCCTCCT
GGAGACCTGGTTTGGTTTAGGTTTGGTTTTAGTTAATGTGACACA
Found at i:103923 original size:21 final size:21
Alignment explanation
Indices: 103899--103939 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
103889 CCCCACTTCT
* *
103899 GAGGCTCCCGAGCCCTCGTCC
1 GAGGCCCCCAAGCCCTCGTCC
*
103920 GAGGCCCCCAAGCCTTCGTC
1 GAGGCCCCCAAGCCCTCGTC
103940 TGACGGCGGT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.12, C:0.46, G:0.27, T:0.15
Consensus pattern (21 bp):
GAGGCCCCCAAGCCCTCGTCC
Left flanking sequence: Indices 103399 -- 103898
TCGGCAGGTCAGGGGTGCGCACGACCCTCCTGCGAGGTTAACCACTGGGATATAAAGAACTGAGG
CCGCCACCGTAGAACCACCGCATTTCAGCTTAGCTAGTCACTCCTTTCTTGCCCAAGCACACAGA
ACCCCGTGTTCGTTCCTTTCCTTCGTCGGTCTATCCCTTCCCTTCCTTTACAATGAAATTTTCCA
CCGTTCTTTTATCCACGCTTTTGTCGCTGCTTGTGGCTTCAGCCCCCGCCCCCAAGGTCAAGGTG
GTGTATGTGACCGAGTATCTTACTGTTCAGAAGACCTCCGGCACTGCGGCCCCCACCTTGATCAC
CCCCACCCCTTCCACTCCTTCTGAAACGCTTATTGATGCTGACAATGTTGCTGGCGACCAAAAGG
CTGCCCCTGCTGAGACCACCGAGTCTAAGCCTGAGGACAAGCCCGAGGACAAGCCTGAGGAGAAG
CCTGAGGCTCCCTCCCCCACTTCGGATGCTCCTGCCCCCACTTCT
Right flanking sequence: Indices 103940 -- 104439
TGACGGCGGTGACAAGGGTCACGGTAAGGAGTACACCGGTAAGGCCACTTACTACGACCCTGGTA
TGGGTGCTTGTGGCCACGAGAGCTCTCCCGATGAGTTGATTGTTGCCCTTGATCTTGGTGTGTTC
AACCAGAAGCTCAAAGAGTCTGGCGAGGTGAACCCCAACAAGAACCCCATTTGTGGCAAGAAAAT
CGAGGCTACCCACGAGGGTAAGTCTGTTGTTGTTACTGTTGTCGATGCCTGCCCCGGTTGCGGTA
AGAACGGTCTTGACTTGACCAAGAAGGCGTTCGCCAAGATCGGTGACGTCGACGACGGCCACTTC
GAAGTGAACTGGAAGTGGGTTGACGAAGAGTAGAGTTCTGGGAACTTCGAAACTCGCCCCCTTCC
ATGATATATACCTTTTTTTCTCTTCTCCTCCTGGAGACCTGGTTTGGTTTAGGTTTGGTTTTAGT
TAATGTGACACATTTTCTCTAGGTTGGAACGTAGGGGTTTGCTGC
Found at i:135765 original size:14 final size:14
Alignment explanation
Indices: 135742--135777 Score: 54
Period size: 14 Copynumber: 2.5 Consensus size: 14
135732 CGCAAGGCAC
*
135742 GGGAAAGAGTGACT
1 GGGAATGAGTGACT
135756 GGGAATGAGTGACT
1 GGGAATGAGTGACT
135770 GGGCAATG
1 GGG-AATG
135778 GCATTAGAGC
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
14 16 0.80
15 4 0.20
ACGTcount: A:0.31, C:0.08, G:0.44, T:0.17
Consensus pattern (14 bp):
GGGAATGAGTGACT
Left flanking sequence: Indices 135242 -- 135741
GTTCACGGGAGCCACGTCTCGCGTGGCCAGCCCCGGTGGAGCCCGTGGTACTACTGTCGGAATTA
CTAGCTAGGATCGATTGTTTCATTGTCAGGTGACCCGCATGTTCCCTGGCGTCGTAGCAGACTGC
GGCTGGGCCCACGATGCGTCCCGGCGCCGATCCCAGTTCCTTTTTCCCGTTGGCTGGTGTCTCGT
GGGGTCAGCGTCGACGCACGCCGTCGGGTCCACTGGCAGTGGTGGGTTAACTCCGTTCCGAACAA
TGACGATGCGACCAGCGAGACGCCATCTGGCATCGCGGCACGCTCGCGTCCGCGGGCGGCAGGTG
CAGTCGACACGGAGGTTACGGAGTAGCGCGGGCGGTGGCTACGAGGGGGGATTCAGGGATCGGGG
ATTATCGCGTCATTACTACATACGGGGTTGCCTGATGCCGATACCCTGTGTGTCCACTGCGCGTC
AGCCGCCTAGCCTTTTTTCCGGGCCCGGGAAGCCCCGCAAGGCAC
Right flanking sequence: Indices 135778 -- 136277
GCATTAGAGCGAACGGGAAACAACACTACAAAGCACACGGGCAATTGCGTAAATGGACCGAGTAC
GGTTGGACAATGGCACGGGACGGGCGCTTGAGTGACTCTAGAAACAACAGTAGTGCACTTGGCAC
ACCCTTGGCACTACCTACTGTAACCGTGCATCCCACGAACTGTGCATCCGTGCATGCACTACAGT
AGACTACGCGTTTCTGATCTCGAGGATCTCGCTGATGGACGAGTCCCGCAACTCCGACGGCACAA
AGATCAGCTTGATGATGCGGATCAACTCGTCGGTGGAAAAGTCGTAGAGCTCGCCCTCGTAGAAC
ATCTCCATGATCAGCTTCAAGTGTTTGTTGACAAGCAAATCGAGGTTGTGGAGCTTGTTGAACAG
CTTGACCAGGTCCTTGGCCACCCCCATCCCGATGATCGCGGGCACGGTGAAGTTGTTGAGCTGGC
TGATCACGGCCGAGATCTTGGCCAGCTGGTACTCGGTGATCTGCT
Found at i:136861 original size:9 final size:9
Alignment explanation
Indices: 136849--136879 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
136839 CTGGCTCAGA
136849 TGGCTTGGC
1 TGGCTTGGC
136858 TGGCTTGGC
1 TGGCTTGGC
*
136867 TGACTTGGC
1 TGGCTTGGC
136876 TGGC
1 TGGC
136880 CCGCCTGACT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.03, C:0.23, G:0.42, T:0.32
Consensus pattern (9 bp):
TGGCTTGGC
Left flanking sequence: Indices 136349 -- 136848
AAGATGGGGTTGGTGGTGGCCCACTGCGATGCAAGCCGGTCGGTCACCCACTGGTAGATCTCGCG
CACGGTGGCCGCGTTGTGCTCGTCCAACTCAAAGTCGTTGGAGAACAGCAGGTCGTCGTTGGAGA
GGTTGAGCCGCGCAATGGTGTCGCCCACGTGTTTGTAGGACGAGATCTGCTCCTGGCGCCACTGG
GCGTCGCCAAACCCGGCGAACTTGTCGTTGTGGGTGAGCTCGGCGAGCCGGTGCATGTCGTTGAC
GAGCAAGAGCGACTCGTGGAGCGGCGGGTACGAGTTGAGCGCGAGCGCGCAGATGGCGTGGACGA
TATCGTCGGTGGGGTTGGCCACGAGGTTGGCGAGCTGCTGGGGGAACTGCGAGCACTGGAGCGGG
GTGAGCGGGGTAGAAGACATTGCGGGAGAAGTGGGCTCGGGTTGGGCCAGAGACGCCAAAACCGG
CCGCTCAGATGGCTTGACTGGTTTAGAGGACGCAGCTGGCTCAGA
Right flanking sequence: Indices 136880 -- 137379
CCGCCTGACTTAGCTCTGATCCCCTTGGTGATCGGCGCAGGCTTCTTGGGCGAGTCGTCCCACCC
GTCGTCGTCGTCGTCGCCCCACGCGTCCCACCCGTCGTCCTCCTTCTTCTCGCGCTTGTCGTCCT
CGCCCCACGAGTCCCACTCGTCGTCGGACTCCGCGGGCTTCAGCTTTTTCGGCGAGCGGGCGTCG
TCGTCCAGCCACGCGTCGTCCCAGTTGTCGTCCCACGCGGCGCCCGGGCTCGCTCCCGCAGCCAC
CCGCTTGGCATCGGGGGTCTTGGGCACCTGAGCCTCAGCCACCGGACGGACGGGCTCGGGCGCTG
GCTCGGGCTGGAGAGGCGCAAACAACCCCTCCGGAGGCGTCCACAGCTCGATCTCGATCTCGTCG
CCCAACACCTCGCGCACCTCGCCTATCGTCTTGTCCGTTTCGTACGCCCGGTAGAACCCCTGCAA
GTTGTCGCGAACCGACACCTCGCGGTTGAACGCGGGGAGCAAGTG
Found at i:136887 original size:18 final size:18
Alignment explanation
Indices: 136852--136890 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
136842 GCTCAGATGG
** *
136852 CTTGGCTGGCTTGGCTGA
1 CTTGGCTGGCCCGCCTGA
136870 CTTGGCTGGCCCGCCTGA
1 CTTGGCTGGCCCGCCTGA
136888 CTT
1 CTT
136891 AGCTCTGATC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.05, C:0.31, G:0.33, T:0.31
Consensus pattern (18 bp):
CTTGGCTGGCCCGCCTGA
Left flanking sequence: Indices 136352 -- 136851
ATGGGGTTGGTGGTGGCCCACTGCGATGCAAGCCGGTCGGTCACCCACTGGTAGATCTCGCGCAC
GGTGGCCGCGTTGTGCTCGTCCAACTCAAAGTCGTTGGAGAACAGCAGGTCGTCGTTGGAGAGGT
TGAGCCGCGCAATGGTGTCGCCCACGTGTTTGTAGGACGAGATCTGCTCCTGGCGCCACTGGGCG
TCGCCAAACCCGGCGAACTTGTCGTTGTGGGTGAGCTCGGCGAGCCGGTGCATGTCGTTGACGAG
CAAGAGCGACTCGTGGAGCGGCGGGTACGAGTTGAGCGCGAGCGCGCAGATGGCGTGGACGATAT
CGTCGGTGGGGTTGGCCACGAGGTTGGCGAGCTGCTGGGGGAACTGCGAGCACTGGAGCGGGGTG
AGCGGGGTAGAAGACATTGCGGGAGAAGTGGGCTCGGGTTGGGCCAGAGACGCCAAAACCGGCCG
CTCAGATGGCTTGACTGGTTTAGAGGACGCAGCTGGCTCAGATGG
Right flanking sequence: Indices 136891 -- 137390
AGCTCTGATCCCCTTGGTGATCGGCGCAGGCTTCTTGGGCGAGTCGTCCCACCCGTCGTCGTCGT
CGTCGCCCCACGCGTCCCACCCGTCGTCCTCCTTCTTCTCGCGCTTGTCGTCCTCGCCCCACGAG
TCCCACTCGTCGTCGGACTCCGCGGGCTTCAGCTTTTTCGGCGAGCGGGCGTCGTCGTCCAGCCA
CGCGTCGTCCCAGTTGTCGTCCCACGCGGCGCCCGGGCTCGCTCCCGCAGCCACCCGCTTGGCAT
CGGGGGTCTTGGGCACCTGAGCCTCAGCCACCGGACGGACGGGCTCGGGCGCTGGCTCGGGCTGG
AGAGGCGCAAACAACCCCTCCGGAGGCGTCCACAGCTCGATCTCGATCTCGTCGCCCAACACCTC
GCGCACCTCGCCTATCGTCTTGTCCGTTTCGTACGCCCGGTAGAACCCCTGCAAGTTGTCGCGAA
CCGACACCTCGCGGTTGAACGCGGGGAGCAAGTGCCACCCGTCGG
Found at i:138635 original size:15 final size:14
Alignment explanation
Indices: 138556--138635 Score: 79
Period size: 14 Copynumber: 5.5 Consensus size: 14
138546 CCCAACAGTC
*
138556 CCTTTCATTTTCGTT
1 CCTTTCAATTT-GTT
* *
138571 CCTTCCAATATTTTT
1 CCTTTCAAT-TTGTT
138586 CCTTTCAATTTGTT
1 CCTTTCAATTTGTT
*
138600 CCTTTTAATTTGTT
1 CCTTTCAATTTGTT
* *
138614 CCATTCAATTTCCTT
1 CCTTTCAATTT-GTT
138629 CCTTTCA
1 CCTTTCA
138636 TATTGTTTGT
Statistics
Matches: 53, Mismatches: 10, Indels: 4
0.79 0.15 0.06
Matches are distributed among these distances:
14 26 0.49
15 25 0.47
16 2 0.04
ACGTcount: A:0.15, C:0.26, G:0.04, T:0.55
Consensus pattern (14 bp):
CCTTTCAATTTGTT
Left flanking sequence: Indices 138056 -- 138555
GAGAGCTTGGACAACTGCTCGGGCTCGCCCTCGGGAGCGTCGCTGCGGAAATCAGCCGTCAAAAC
CACCAGTGCGGGGTCGAGCTCGTTGCAGAACACGTCGATCTGCCGCGTCGCATGGTCAATTTGCT
CCTGTTTCGCCTGGAGAAGCGCCGCGAGCGACATTGGGTGGTGTTGCTGACTGATTTCGCGTGCG
AATATAGCAAGGTGTGCGAGCGTGAGGTGGGCAGGCAATTGGGGTGGGTAGCGGGTGTGGTTTAG
GTGGTGGTAGGTGGGTTTGGTTTGTTACGGGTTCTACTGTGGTTTACATAGTTTGTTTGTGGTGG
GCGTACGTTTGCCTACGTGGCGTATACATTCGCGAAGTCGAGTAATTTTCAGGCGTCAAAGATTG
TAGGATAGTCTTCAACAGTGCGCAGCCACGATTAAAGCCAGAACGCGTTGAACAGCGGAATACGT
TCGTTTTAGGTGATTCCCTGAACTGTTGTACACTTCCCAACAGTC
Right flanking sequence: Indices 138636 -- 139135
TATTGTTTGTTGCACATCATTTCTTTCCCCATCATCCTTCATTTCGCAAGTCTTCATTACTCAAT
ACTCTAATTATCTCTATCTATTTCAGTCCTGATCACAAAAGATCCTCGGTGATGTCGTCGTCCAA
GTACTCGTCGTCCTTGTTCATCCGGTAAATCGTCATCGCCATCGACGCCACGTTCAACGTGTTCA
TCAACCACGACGGGACCACAACCTCCCAGAGCTCAATCAGGTTGAATCCAAGATCCAAAAAGTTA
CCAAACAACTCGATCCACAACATCATCTTGTCGAACTTGAGGTCTTTCAACACCTTGGTGTACCG
GCGCTGCACCTCGTCGTTCATCGCAGGCATGGTCTTGGTCTTGTTGCGCTGCAACAACCCAAGCT
CGGTGTTCACCTTGCGCTCCTTGCGAATGACATTTCTCAACTGGGTCACCGTCTTGCGGATCAAA
AACAAAAGAATCAACACCCAGATCTTGTTGGTGTTTTTCAACACC
Found at i:138641 original size:29 final size:29
Alignment explanation
Indices: 138559--138642 Score: 82
Period size: 29 Copynumber: 2.9 Consensus size: 29
138549 AACAGTCCCT
* * * *
138559 TTCATTTTCGTTCCTTCCAATATTTTTCCT
1 TTCAATTTCGTTCCTTTC-ATATTGTTCCA
*
138589 TTCAATTT-GTTCCTTTTA-ATTTGTTCCA
1 TTCAATTTCGTTCCTTTCATA-TTGTTCCA
*
138617 TTCAATTTCCTTCCTTTCATATTGTT
1 TTCAATTTCGTTCCTTTCATATTGTT
138643 TGTTGCACAT
Statistics
Matches: 44, Mismatches: 7, Indels: 7
0.76 0.12 0.12
Matches are distributed among these distances:
27 1 0.02
28 15 0.34
29 20 0.45
30 8 0.18
ACGTcount: A:0.15, C:0.23, G:0.05, T:0.57
Consensus pattern (29 bp):
TTCAATTTCGTTCCTTTCATATTGTTCCA
Left flanking sequence: Indices 138059 -- 138558
AGCTTGGACAACTGCTCGGGCTCGCCCTCGGGAGCGTCGCTGCGGAAATCAGCCGTCAAAACCAC
CAGTGCGGGGTCGAGCTCGTTGCAGAACACGTCGATCTGCCGCGTCGCATGGTCAATTTGCTCCT
GTTTCGCCTGGAGAAGCGCCGCGAGCGACATTGGGTGGTGTTGCTGACTGATTTCGCGTGCGAAT
ATAGCAAGGTGTGCGAGCGTGAGGTGGGCAGGCAATTGGGGTGGGTAGCGGGTGTGGTTTAGGTG
GTGGTAGGTGGGTTTGGTTTGTTACGGGTTCTACTGTGGTTTACATAGTTTGTTTGTGGTGGGCG
TACGTTTGCCTACGTGGCGTATACATTCGCGAAGTCGAGTAATTTTCAGGCGTCAAAGATTGTAG
GATAGTCTTCAACAGTGCGCAGCCACGATTAAAGCCAGAACGCGTTGAACAGCGGAATACGTTCG
TTTTAGGTGATTCCCTGAACTGTTGTACACTTCCCAACAGTCCCT
Right flanking sequence: Indices 138643 -- 139142
TGTTGCACATCATTTCTTTCCCCATCATCCTTCATTTCGCAAGTCTTCATTACTCAATACTCTAA
TTATCTCTATCTATTTCAGTCCTGATCACAAAAGATCCTCGGTGATGTCGTCGTCCAAGTACTCG
TCGTCCTTGTTCATCCGGTAAATCGTCATCGCCATCGACGCCACGTTCAACGTGTTCATCAACCA
CGACGGGACCACAACCTCCCAGAGCTCAATCAGGTTGAATCCAAGATCCAAAAAGTTACCAAACA
ACTCGATCCACAACATCATCTTGTCGAACTTGAGGTCTTTCAACACCTTGGTGTACCGGCGCTGC
ACCTCGTCGTTCATCGCAGGCATGGTCTTGGTCTTGTTGCGCTGCAACAACCCAAGCTCGGTGTT
CACCTTGCGCTCCTTGCGAATGACATTTCTCAACTGGGTCACCGTCTTGCGGATCAAAAACAAAA
GAATCAACACCCAGATCTTGTTGGTGTTTTTCAACACCCGCTTCA
Found at i:140068 original size:18 final size:18
Alignment explanation
Indices: 140027--140073 Score: 58
Period size: 18 Copynumber: 2.6 Consensus size: 18
140017 TACTCCGTTG
* *
140027 CCTCTCTATTCTCCTCGC
1 CCTCTCCATTCTCCTCAC
* *
140045 CGTCTCCATTCTCTTCAC
1 CCTCTCCATTCTCCTCAC
140063 CCTCTCCATTC
1 CCTCTCCATTC
140074 ACTCCCACCT
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.09, C:0.49, G:0.04, T:0.38
Consensus pattern (18 bp):
CCTCTCCATTCTCCTCAC
Left flanking sequence: Indices 139527 -- 140026
TGGGTGGGGTCGGAGCTTGCTTCCGGGTGAGGAGGAGTTGTTGGAGCTGGTCGAGCTTGTCGGTG
GTGATGTTTTCGTTGCCCTTTTGCTGTTCCTGGCGTGCTAATCGAAGAAGATCCTCAATCACCTC
CGTATTACTCATGATTTTCAGCGGTTCGGTGGAGAAGCCTGTGAAACCTGACGCTGGTGTCTGCA
CATAGATAGCCTCGGGACAGTGTGGGGATGCGCGGGTCGCATGCACGACCCGCGGAAGCCTATCA
CGGCGGTGTGAAAGCGAATAGTTGGGGAGGTAGAGAAGGGGTGGTGTGTTGTTCATGATGTGACT
CTTAGCCTGGTTGGTAACCGTAGGCTCTTTAGTCTGTGTGCTATCCACTGGAGTGTAGACTTATT
TATTCTTTGACAGGCCTCCATACAGGATTTTGCAGCTGACCGTGACTAATCCAGCTACACAAAAC
GGTTCCAATTGTTGTCTATTACATCTATAAGCGTCTACTCCGTTG
Right flanking sequence: Indices 140074 -- 140573
ACTCCCACCTCTTCCTTTTCCTCAACCTCACCATTTTCTCCCACCTCTTCCTTCTCTGCTGCCTC
TTCCACCACCACATCCCCCACTTCCCTTCCTTCTTCCCACCGGAAGTCCCCCAGGTGGATCGCCT
TGCGCTCCTCCAAGTACTCCAAGTACTCCTTCCACAACGGGTCGCCCCGCTTCAAACACGCAACG
TCCCCGATGATCACCAACCCGTACTTGGCTCTGGTAAGAGCCACGTTGAGCCGGCGCTCGTCCTT
GAGGAAACCAATCTTGCCCTCCGGGTTCGACCGCACACACCCCATGACCAAAAAGTTCTTCTCGC
GACCCTGGAAAGCGTCGATAGAGGCAATCATGATCCCCAGCACCACGTGGATGGTCACAGGCTTC
GAGTCGTTGGTGATATCGTCGATATCCACCTCGATCTGGACAGCACCACGCTCGGGGTTGATCAA
GTCGTCCTTAGCAAGCACCTCAGAAATCATGTTGCGCTGGCCCAG
Found at i:141825 original size:9 final size:9
Alignment explanation
Indices: 141811--141851 Score: 55
Period size: 9 Copynumber: 4.6 Consensus size: 9
141801 CTTGGGAGGA
141811 CCTCCGCGG
1 CCTCCGCGG
141820 CCTCCGCGG
1 CCTCCGCGG
* *
141829 CCTCCACGA
1 CCTCCGCGG
*
141838 CCACCGCGG
1 CCTCCGCGG
141847 CCTCC
1 CCTCC
141852 ACGACCACGA
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.07, C:0.59, G:0.24, T:0.10
Consensus pattern (9 bp):
CCTCCGCGG
Left flanking sequence: Indices 141311 -- 141810
GCTGCTTGTTGTACTCACGCTCCTTCTCCAGCGCGGTGATCCGGAGAATCTGTTTCCCGTGGGTG
GGCAAGAGCTTCTCGGCAATGTTGTCGATGGCGATATTGGACGAGGCACACACCAAGATCGGGTA
GGTGTTGAGCTGGTCCAACAACTGCAAGATGATCTCGTGGATGGTGCTGGTCTTACCGGTCCCGG
GCGGGCCCTGGAGCACGGTGATGGCGTTGTTGAGCACCGACTGGATCGCCACCTTCTGCGACGGG
TTGAACAGGTCGCGGGTGAGGTTGACGTGGTTGCGGAAGAAGATCTGGCGGATGGGCTCGTTCCC
AAGCAACATCTTCTTGAACGTGGGCTTCTCGAGCTGCGACATTGCCGTGAACACCCGCGACACGG
GGATCGACAGCGGCATCACCTTGAGGTCGTCGATGTGCGACAGGTGGGGCAAGGGCTCATTGTTC
CACGGGTAGAGCTGGACCACCACCTCGATCACGTCCTTGGGAGGA
Right flanking sequence: Indices 141852 -- 142351
ACGACCACGACCACGGCCACGACCACGGCCACCACGGCCACCACCGCTCTTGGTGGAGCTCACCG
ACGACACGGTGTCCACAGTGGCCACGTACCCGTACCACGGCTTGCGGTCATTCTCTACAAGGAAC
ATCGACTGGCCCACCTGGAAGGGCGTCTTGCGCAACTTGATGAACTTCTCCATCATGAAGCGGTT
CTTGATTTCGCCCATCATCATCAGCATCTTGAACTGGGAGTGGGTCTTGGCGGGATCGGCGTACC
ACTCGATGAGCATGTCGTCGGAGTCGATGAGCTTGTCGTCGTTGGACATCTGCTCCTCCAAAAAG
AGGTTGAAAGACATGTGGCGGTAGTAGTCGTCGATGGAGTCGTAGCGGAGCGGGGGTGTTTTCGA
GGCGTGGTACTTGGAGAGCACCTCTGGGGCGTCGTCGTCGAGCCCAGGCGTTCCCTCACGGGTAG
GCTTGGATTGGGTCTCGGATGGTGTGTCATTGGACTTGGGTTCGG
Found at i:141844 original size:18 final size:18
Alignment explanation
Indices: 141823--141859 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
141813 TCCGCGGCCT
141823 CCGCGGCCTCCACGACCA
1 CCGCGGCCTCCACGACCA
141841 CCGCGGCCTCCACGACCA
1 CCGCGGCCTCCACGACCA
141859 C
1 C
141860 GACCACGGCC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.16, C:0.57, G:0.22, T:0.05
Consensus pattern (18 bp):
CCGCGGCCTCCACGACCA
Left flanking sequence: Indices 141323 -- 141822
ACTCACGCTCCTTCTCCAGCGCGGTGATCCGGAGAATCTGTTTCCCGTGGGTGGGCAAGAGCTTC
TCGGCAATGTTGTCGATGGCGATATTGGACGAGGCACACACCAAGATCGGGTAGGTGTTGAGCTG
GTCCAACAACTGCAAGATGATCTCGTGGATGGTGCTGGTCTTACCGGTCCCGGGCGGGCCCTGGA
GCACGGTGATGGCGTTGTTGAGCACCGACTGGATCGCCACCTTCTGCGACGGGTTGAACAGGTCG
CGGGTGAGGTTGACGTGGTTGCGGAAGAAGATCTGGCGGATGGGCTCGTTCCCAAGCAACATCTT
CTTGAACGTGGGCTTCTCGAGCTGCGACATTGCCGTGAACACCCGCGACACGGGGATCGACAGCG
GCATCACCTTGAGGTCGTCGATGTGCGACAGGTGGGGCAAGGGCTCATTGTTCCACGGGTAGAGC
TGGACCACCACCTCGATCACGTCCTTGGGAGGACCTCCGCGGCCT
Right flanking sequence: Indices 141860 -- 142359
GACCACGGCCACGACCACGGCCACCACGGCCACCACCGCTCTTGGTGGAGCTCACCGACGACACG
GTGTCCACAGTGGCCACGTACCCGTACCACGGCTTGCGGTCATTCTCTACAAGGAACATCGACTG
GCCCACCTGGAAGGGCGTCTTGCGCAACTTGATGAACTTCTCCATCATGAAGCGGTTCTTGATTT
CGCCCATCATCATCAGCATCTTGAACTGGGAGTGGGTCTTGGCGGGATCGGCGTACCACTCGATG
AGCATGTCGTCGGAGTCGATGAGCTTGTCGTCGTTGGACATCTGCTCCTCCAAAAAGAGGTTGAA
AGACATGTGGCGGTAGTAGTCGTCGATGGAGTCGTAGCGGAGCGGGGGTGTTTTCGAGGCGTGGT
ACTTGGAGAGCACCTCTGGGGCGTCGTCGTCGAGCCCAGGCGTTCCCTCACGGGTAGGCTTGGAT
TGGGTCTCGGATGGTGTGTCATTGGACTTGGGTTCGGTGACCTTA
Found at i:141892 original size:6 final size:6
Alignment explanation
Indices: 141850--141883 Score: 50
Period size: 6 Copynumber: 5.7 Consensus size: 6
141840 ACCGCGGCCT
* *
141850 CCACGA CCACGA CCACGG CCACGA CCACGG CCAC
1 CCACGA CCACGA CCACGA CCACGA CCACGA CCAC
141884 CACGGCCACC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.26, C:0.53, G:0.21, T:0.00
Consensus pattern (6 bp):
CCACGA
Left flanking sequence: Indices 141350 -- 141849
TCCGGAGAATCTGTTTCCCGTGGGTGGGCAAGAGCTTCTCGGCAATGTTGTCGATGGCGATATTG
GACGAGGCACACACCAAGATCGGGTAGGTGTTGAGCTGGTCCAACAACTGCAAGATGATCTCGTG
GATGGTGCTGGTCTTACCGGTCCCGGGCGGGCCCTGGAGCACGGTGATGGCGTTGTTGAGCACCG
ACTGGATCGCCACCTTCTGCGACGGGTTGAACAGGTCGCGGGTGAGGTTGACGTGGTTGCGGAAG
AAGATCTGGCGGATGGGCTCGTTCCCAAGCAACATCTTCTTGAACGTGGGCTTCTCGAGCTGCGA
CATTGCCGTGAACACCCGCGACACGGGGATCGACAGCGGCATCACCTTGAGGTCGTCGATGTGCG
ACAGGTGGGGCAAGGGCTCATTGTTCCACGGGTAGAGCTGGACCACCACCTCGATCACGTCCTTG
GGAGGACCTCCGCGGCCTCCGCGGCCTCCACGACCACCGCGGCCT
Right flanking sequence: Indices 141884 -- 142383
CACGGCCACCACCGCTCTTGGTGGAGCTCACCGACGACACGGTGTCCACAGTGGCCACGTACCCG
TACCACGGCTTGCGGTCATTCTCTACAAGGAACATCGACTGGCCCACCTGGAAGGGCGTCTTGCG
CAACTTGATGAACTTCTCCATCATGAAGCGGTTCTTGATTTCGCCCATCATCATCAGCATCTTGA
ACTGGGAGTGGGTCTTGGCGGGATCGGCGTACCACTCGATGAGCATGTCGTCGGAGTCGATGAGC
TTGTCGTCGTTGGACATCTGCTCCTCCAAAAAGAGGTTGAAAGACATGTGGCGGTAGTAGTCGTC
GATGGAGTCGTAGCGGAGCGGGGGTGTTTTCGAGGCGTGGTACTTGGAGAGCACCTCTGGGGCGT
CGTCGTCGAGCCCAGGCGTTCCCTCACGGGTAGGCTTGGATTGGGTCTCGGATGGTGTGTCATTG
GACTTGGGTTCGGTGACCTTAGCCTGTTTATCCTTTTTGGTTTTG
Found at i:141896 original size:12 final size:12
Alignment explanation
Indices: 141850--141883 Score: 59
Period size: 12 Copynumber: 2.8 Consensus size: 12
141840 ACCGCGGCCT
*
141850 CCACGACCACGA
1 CCACGGCCACGA
141862 CCACGGCCACGA
1 CCACGGCCACGA
141874 CCACGGCCAC
1 CCACGGCCAC
141884 CACGGCCACC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.26, C:0.53, G:0.21, T:0.00
Consensus pattern (12 bp):
CCACGGCCACGA
Left flanking sequence: Indices 141350 -- 141849
TCCGGAGAATCTGTTTCCCGTGGGTGGGCAAGAGCTTCTCGGCAATGTTGTCGATGGCGATATTG
GACGAGGCACACACCAAGATCGGGTAGGTGTTGAGCTGGTCCAACAACTGCAAGATGATCTCGTG
GATGGTGCTGGTCTTACCGGTCCCGGGCGGGCCCTGGAGCACGGTGATGGCGTTGTTGAGCACCG
ACTGGATCGCCACCTTCTGCGACGGGTTGAACAGGTCGCGGGTGAGGTTGACGTGGTTGCGGAAG
AAGATCTGGCGGATGGGCTCGTTCCCAAGCAACATCTTCTTGAACGTGGGCTTCTCGAGCTGCGA
CATTGCCGTGAACACCCGCGACACGGGGATCGACAGCGGCATCACCTTGAGGTCGTCGATGTGCG
ACAGGTGGGGCAAGGGCTCATTGTTCCACGGGTAGAGCTGGACCACCACCTCGATCACGTCCTTG
GGAGGACCTCCGCGGCCTCCGCGGCCTCCACGACCACCGCGGCCT
Right flanking sequence: Indices 141884 -- 142383
CACGGCCACCACCGCTCTTGGTGGAGCTCACCGACGACACGGTGTCCACAGTGGCCACGTACCCG
TACCACGGCTTGCGGTCATTCTCTACAAGGAACATCGACTGGCCCACCTGGAAGGGCGTCTTGCG
CAACTTGATGAACTTCTCCATCATGAAGCGGTTCTTGATTTCGCCCATCATCATCAGCATCTTGA
ACTGGGAGTGGGTCTTGGCGGGATCGGCGTACCACTCGATGAGCATGTCGTCGGAGTCGATGAGC
TTGTCGTCGTTGGACATCTGCTCCTCCAAAAAGAGGTTGAAAGACATGTGGCGGTAGTAGTCGTC
GATGGAGTCGTAGCGGAGCGGGGGTGTTTTCGAGGCGTGGTACTTGGAGAGCACCTCTGGGGCGT
CGTCGTCGAGCCCAGGCGTTCCCTCACGGGTAGGCTTGGATTGGGTCTCGGATGGTGTGTCATTG
GACTTGGGTTCGGTGACCTTAGCCTGTTTATCCTTTTTGGTTTTG
Found at i:142622 original size:30 final size:30
Alignment explanation
Indices: 142546--142622 Score: 93
Period size: 30 Copynumber: 2.6 Consensus size: 30
142536 CTTACCCTTG
* ** *
142546 TCCTTAGCCTTGGATTCCTTGCCATTGTCG
1 TCCTTAGCCTTGGGTTCCTAACCATTGTCA
*
142576 TCCTTAGCCTTAGGTTCCTCAACC-TTGTCA
1 TCCTTAGCCTTGGGTTCCT-AACCATTGTCA
142606 TCCTTAGCCTTGGGTTC
1 TCCTTAGCCTTGGGTTC
142623 TTTAGCACCC
Statistics
Matches: 40, Mismatches: 6, Indels: 2
0.83 0.12 0.04
Matches are distributed among these distances:
30 38 0.95
31 2 0.05
ACGTcount: A:0.12, C:0.31, G:0.18, T:0.39
Consensus pattern (30 bp):
TCCTTAGCCTTGGGTTCCTAACCATTGTCA
Left flanking sequence: Indices 142046 -- 142545
TCTTGATTTCGCCCATCATCATCAGCATCTTGAACTGGGAGTGGGTCTTGGCGGGATCGGCGTAC
CACTCGATGAGCATGTCGTCGGAGTCGATGAGCTTGTCGTCGTTGGACATCTGCTCCTCCAAAAA
GAGGTTGAAAGACATGTGGCGGTAGTAGTCGTCGATGGAGTCGTAGCGGAGCGGGGGTGTTTTCG
AGGCGTGGTACTTGGAGAGCACCTCTGGGGCGTCGTCGTCGAGCCCAGGCGTTCCCTCACGGGTA
GGCTTGGATTGGGTCTCGGATGGTGTGTCATTGGACTTGGGTTCGGTGACCTTAGCCTGTTTATC
CTTTTTGGTTTTGGCATCAGGTTTGGTGTCCTTGGTGCCCTTGGGCTCCTTTGTCTTGGCCTTAG
GCTCGTTGGACTCACCCTTTGCTTCTTTGGGTTTGGCATCTTTACCCACGGATTCCTTGGACTTT
GGTTTCTTGGATTTTGAGTCTTGGCCCTTGGTATCCTTACCCTTG
Right flanking sequence: Indices 142623 -- 143122
TTTAGCACCCTTAGGATCCTTAGTTTTAGAATCCTTGGCTTTAGCTCCCTTCACCTTAAGCCCAT
TCCCCTTCAATACCTTCCCCTCAGTCTCCTTCCCCTTAGTCTCCTTCCCCTTAGTCTCCTTCCCC
TTGGCCTCCTTCTTGGCCTCCTTTCCCTTAGCCTCCTTCTTGGCAGGCTTCCCCAAGGCGGGAGA
CTGAGAGCGCGAGCCAGCTGGCGATGTGGCGGCCGACGGAGCCCCACTCAAGATCCCCTTGGGCG
TGATTTTCCCCGAGCCAATTGCCTTGATCGTGGCACCTCCCTTGATCTGCTTGGCCTGGATCACC
GTCTTCTCGTAGTGGGCCCGGCGCTCGGCCGCTTCTTTCTCGTCCACGGGCGGCTTGGTGCGCCG
CCGCCCACCGTCCTTGCCGCCCTTGCGTCCCATCTTGCGTCCCCGTGCCCCTGCCTTGCTGTTTT
TCAGCGGGATGAACTCGGTGATCCCCAACAACTCGTACAAGAACA
Found at i:142718 original size:15 final size:15
Alignment explanation
Indices: 142700--142764 Score: 103
Period size: 15 Copynumber: 4.3 Consensus size: 15
142690 CCCTTCAATA
*
142700 CCTTCCCCTCAGTCT
1 CCTTCCCCTTAGTCT
142715 CCTTCCCCTTAGTCT
1 CCTTCCCCTTAGTCT
142730 CCTTCCCCTTAGTCT
1 CCTTCCCCTTAGTCT
* *
142745 CCTTCCCCTTGGCCT
1 CCTTCCCCTTAGTCT
142760 CCTTC
1 CCTTC
142765 TTGGCCTCCT
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 47 1.00
ACGTcount: A:0.05, C:0.51, G:0.08, T:0.37
Consensus pattern (15 bp):
CCTTCCCCTTAGTCT
Left flanking sequence: Indices 142200 -- 142699
GTAGTCGTCGATGGAGTCGTAGCGGAGCGGGGGTGTTTTCGAGGCGTGGTACTTGGAGAGCACCT
CTGGGGCGTCGTCGTCGAGCCCAGGCGTTCCCTCACGGGTAGGCTTGGATTGGGTCTCGGATGGT
GTGTCATTGGACTTGGGTTCGGTGACCTTAGCCTGTTTATCCTTTTTGGTTTTGGCATCAGGTTT
GGTGTCCTTGGTGCCCTTGGGCTCCTTTGTCTTGGCCTTAGGCTCGTTGGACTCACCCTTTGCTT
CTTTGGGTTTGGCATCTTTACCCACGGATTCCTTGGACTTTGGTTTCTTGGATTTTGAGTCTTGG
CCCTTGGTATCCTTACCCTTGTCCTTAGCCTTGGATTCCTTGCCATTGTCGTCCTTAGCCTTAGG
TTCCTCAACCTTGTCATCCTTAGCCTTGGGTTCTTTAGCACCCTTAGGATCCTTAGTTTTAGAAT
CCTTGGCTTTAGCTCCCTTCACCTTAAGCCCATTCCCCTTCAATA
Right flanking sequence: Indices 142765 -- 143264
TTGGCCTCCTTTCCCTTAGCCTCCTTCTTGGCAGGCTTCCCCAAGGCGGGAGACTGAGAGCGCGA
GCCAGCTGGCGATGTGGCGGCCGACGGAGCCCCACTCAAGATCCCCTTGGGCGTGATTTTCCCCG
AGCCAATTGCCTTGATCGTGGCACCTCCCTTGATCTGCTTGGCCTGGATCACCGTCTTCTCGTAG
TGGGCCCGGCGCTCGGCCGCTTCTTTCTCGTCCACGGGCGGCTTGGTGCGCCGCCGCCCACCGTC
CTTGCCGCCCTTGCGTCCCATCTTGCGTCCCCGTGCCCCTGCCTTGCTGTTTTTCAGCGGGATGA
ACTCGGTGATCCCCAACAACTCGTACAAGAACAGGGGCTCGCCCTCAGCCACCCACTCGCGCTTG
CCTCCGTGCTTCGCAATACACTCAGCACACATCACCAGGCCCTTGGACGCCAGCAATTGCTCGTC
CGCATCGCACTTGTCGCAACTGAGGTCGCGGAACTGGTAGTACTG
Found at i:142721 original size:30 final size:30
Alignment explanation
Indices: 142687--142754 Score: 93
Period size: 30 Copynumber: 2.3 Consensus size: 30
142677 CTTAAGCCCA
142687 TTCCCCTTCAAT-ACCTTCCCCTCAGTCTCC
1 TTCCCCTT-AATCACCTTCCCCTCAGTCTCC
* * *
142717 TTCCCCTTAGTCTCCTTCCCCTTAGTCTCC
1 TTCCCCTTAATCACCTTCCCCTCAGTCTCC
142747 TTCCCCTT
1 TTCCCCTT
142755 GGCCTCCTTC
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
29 2 0.06
30 32 0.94
ACGTcount: A:0.09, C:0.49, G:0.04, T:0.38
Consensus pattern (30 bp):
TTCCCCTTAATCACCTTCCCCTCAGTCTCC
Left flanking sequence: Indices 142187 -- 142686
ACATGTGGCGGTAGTAGTCGTCGATGGAGTCGTAGCGGAGCGGGGGTGTTTTCGAGGCGTGGTAC
TTGGAGAGCACCTCTGGGGCGTCGTCGTCGAGCCCAGGCGTTCCCTCACGGGTAGGCTTGGATTG
GGTCTCGGATGGTGTGTCATTGGACTTGGGTTCGGTGACCTTAGCCTGTTTATCCTTTTTGGTTT
TGGCATCAGGTTTGGTGTCCTTGGTGCCCTTGGGCTCCTTTGTCTTGGCCTTAGGCTCGTTGGAC
TCACCCTTTGCTTCTTTGGGTTTGGCATCTTTACCCACGGATTCCTTGGACTTTGGTTTCTTGGA
TTTTGAGTCTTGGCCCTTGGTATCCTTACCCTTGTCCTTAGCCTTGGATTCCTTGCCATTGTCGT
CCTTAGCCTTAGGTTCCTCAACCTTGTCATCCTTAGCCTTGGGTTCTTTAGCACCCTTAGGATCC
TTAGTTTTAGAATCCTTGGCTTTAGCTCCCTTCACCTTAAGCCCA
Right flanking sequence: Indices 142755 -- 143254
GGCCTCCTTCTTGGCCTCCTTTCCCTTAGCCTCCTTCTTGGCAGGCTTCCCCAAGGCGGGAGACT
GAGAGCGCGAGCCAGCTGGCGATGTGGCGGCCGACGGAGCCCCACTCAAGATCCCCTTGGGCGTG
ATTTTCCCCGAGCCAATTGCCTTGATCGTGGCACCTCCCTTGATCTGCTTGGCCTGGATCACCGT
CTTCTCGTAGTGGGCCCGGCGCTCGGCCGCTTCTTTCTCGTCCACGGGCGGCTTGGTGCGCCGCC
GCCCACCGTCCTTGCCGCCCTTGCGTCCCATCTTGCGTCCCCGTGCCCCTGCCTTGCTGTTTTTC
AGCGGGATGAACTCGGTGATCCCCAACAACTCGTACAAGAACAGGGGCTCGCCCTCAGCCACCCA
CTCGCGCTTGCCTCCGTGCTTCGCAATACACTCAGCACACATCACCAGGCCCTTGGACGCCAGCA
ATTGCTCGTCCGCATCGCACTTGTCGCAACTGAGGTCGCGGAACT
Found at i:142769 original size:12 final size:12
Alignment explanation
Indices: 142752--142796 Score: 54
Period size: 12 Copynumber: 3.5 Consensus size: 12
142742 TCTCCTTCCC
142752 CTTGGCCTCCTT
1 CTTGGCCTCCTT
142764 CTTGGCCTCCTTT
1 CTTGGCCTCC-TT
*
142777 CCCTTAGCCTCCTT
1 --CTTGGCCTCCTT
142791 CTTGGC
1 CTTGGC
142797 AGGCTTCCCC
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
12 15 0.54
13 2 0.07
14 2 0.07
15 9 0.32
ACGTcount: A:0.02, C:0.42, G:0.16, T:0.40
Consensus pattern (12 bp):
CTTGGCCTCCTT
Left flanking sequence: Indices 142252 -- 142751
TTGGAGAGCACCTCTGGGGCGTCGTCGTCGAGCCCAGGCGTTCCCTCACGGGTAGGCTTGGATTG
GGTCTCGGATGGTGTGTCATTGGACTTGGGTTCGGTGACCTTAGCCTGTTTATCCTTTTTGGTTT
TGGCATCAGGTTTGGTGTCCTTGGTGCCCTTGGGCTCCTTTGTCTTGGCCTTAGGCTCGTTGGAC
TCACCCTTTGCTTCTTTGGGTTTGGCATCTTTACCCACGGATTCCTTGGACTTTGGTTTCTTGGA
TTTTGAGTCTTGGCCCTTGGTATCCTTACCCTTGTCCTTAGCCTTGGATTCCTTGCCATTGTCGT
CCTTAGCCTTAGGTTCCTCAACCTTGTCATCCTTAGCCTTGGGTTCTTTAGCACCCTTAGGATCC
TTAGTTTTAGAATCCTTGGCTTTAGCTCCCTTCACCTTAAGCCCATTCCCCTTCAATACCTTCCC
CTCAGTCTCCTTCCCCTTAGTCTCCTTCCCCTTAGTCTCCTTCCC
Right flanking sequence: Indices 142797 -- 143296
AGGCTTCCCCAAGGCGGGAGACTGAGAGCGCGAGCCAGCTGGCGATGTGGCGGCCGACGGAGCCC
CACTCAAGATCCCCTTGGGCGTGATTTTCCCCGAGCCAATTGCCTTGATCGTGGCACCTCCCTTG
ATCTGCTTGGCCTGGATCACCGTCTTCTCGTAGTGGGCCCGGCGCTCGGCCGCTTCTTTCTCGTC
CACGGGCGGCTTGGTGCGCCGCCGCCCACCGTCCTTGCCGCCCTTGCGTCCCATCTTGCGTCCCC
GTGCCCCTGCCTTGCTGTTTTTCAGCGGGATGAACTCGGTGATCCCCAACAACTCGTACAAGAAC
AGGGGCTCGCCCTCAGCCACCCACTCGCGCTTGCCTCCGTGCTTCGCAATACACTCAGCACACAT
CACCAGGCCCTTGGACGCCAGCAATTGCTCGTCCGCATCGCACTTGTCGCAACTGAGGTCGCGGA
ACTGGTAGTACTGGTCGAGCTTGGCAAACAACGTCCCGTTGGACA
Found at i:142781 original size:27 final size:27
Alignment explanation
Indices: 142713--142796 Score: 96
Period size: 27 Copynumber: 3.0 Consensus size: 27
142703 TCCCCTCAGT
* * *
142713 CTCCTTCCCCTTAGTCTCCTTCCCCTTAGT
1 CTCCTTCCCCTTAGCCTCCTT---CTTGGC
*
142743 CTCCTTCCCCTTGGCCTCCTTCTTGGC
1 CTCCTTCCCCTTAGCCTCCTTCTTGGC
*
142770 CTCCTTTCCCTTAGCCTCCTTCTTGGC
1 CTCCTTCCCCTTAGCCTCCTTCTTGGC
142797 AGGCTTCCCC
Statistics
Matches: 48, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
27 29 0.60
30 19 0.40
ACGTcount: A:0.04, C:0.46, G:0.11, T:0.39
Consensus pattern (27 bp):
CTCCTTCCCCTTAGCCTCCTTCTTGGC
Left flanking sequence: Indices 142213 -- 142712
GAGTCGTAGCGGAGCGGGGGTGTTTTCGAGGCGTGGTACTTGGAGAGCACCTCTGGGGCGTCGTC
GTCGAGCCCAGGCGTTCCCTCACGGGTAGGCTTGGATTGGGTCTCGGATGGTGTGTCATTGGACT
TGGGTTCGGTGACCTTAGCCTGTTTATCCTTTTTGGTTTTGGCATCAGGTTTGGTGTCCTTGGTG
CCCTTGGGCTCCTTTGTCTTGGCCTTAGGCTCGTTGGACTCACCCTTTGCTTCTTTGGGTTTGGC
ATCTTTACCCACGGATTCCTTGGACTTTGGTTTCTTGGATTTTGAGTCTTGGCCCTTGGTATCCT
TACCCTTGTCCTTAGCCTTGGATTCCTTGCCATTGTCGTCCTTAGCCTTAGGTTCCTCAACCTTG
TCATCCTTAGCCTTGGGTTCTTTAGCACCCTTAGGATCCTTAGTTTTAGAATCCTTGGCTTTAGC
TCCCTTCACCTTAAGCCCATTCCCCTTCAATACCTTCCCCTCAGT
Right flanking sequence: Indices 142797 -- 143296
AGGCTTCCCCAAGGCGGGAGACTGAGAGCGCGAGCCAGCTGGCGATGTGGCGGCCGACGGAGCCC
CACTCAAGATCCCCTTGGGCGTGATTTTCCCCGAGCCAATTGCCTTGATCGTGGCACCTCCCTTG
ATCTGCTTGGCCTGGATCACCGTCTTCTCGTAGTGGGCCCGGCGCTCGGCCGCTTCTTTCTCGTC
CACGGGCGGCTTGGTGCGCCGCCGCCCACCGTCCTTGCCGCCCTTGCGTCCCATCTTGCGTCCCC
GTGCCCCTGCCTTGCTGTTTTTCAGCGGGATGAACTCGGTGATCCCCAACAACTCGTACAAGAAC
AGGGGCTCGCCCTCAGCCACCCACTCGCGCTTGCCTCCGTGCTTCGCAATACACTCAGCACACAT
CACCAGGCCCTTGGACGCCAGCAATTGCTCGTCCGCATCGCACTTGTCGCAACTGAGGTCGCGGA
ACTGGTAGTACTGGTCGAGCTTGGCAAACAACGTCCCGTTGGACA
Found at i:142788 original size:15 final size:15
Alignment explanation
Indices: 142700--142791 Score: 100
Period size: 15 Copynumber: 6.3 Consensus size: 15
142690 CCCTTCAATA
* *
142700 CCTTCCCCTCAGTCT
1 CCTTCCCCTTAGCCT
*
142715 CCTTCCCCTTAGTCT
1 CCTTCCCCTTAGCCT
*
142730 CCTTCCCCTTAGTCT
1 CCTTCCCCTTAGCCT
*
142745 CCTTCCCCTTGGCCT
1 CCTTCCCCTTAGCCT
*
142760 CCTT---CTTGGCCT
1 CCTTCCCCTTAGCCT
*
142772 CCTTTCCCTTAGCCT
1 CCTTCCCCTTAGCCT
142787 CCTTC
1 CCTTC
142792 TTGGCAGGCT
Statistics
Matches: 69, Mismatches: 5, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
12 12 0.17
15 57 0.83
ACGTcount: A:0.04, C:0.49, G:0.09, T:0.38
Consensus pattern (15 bp):
CCTTCCCCTTAGCCT
Left flanking sequence: Indices 142200 -- 142699
GTAGTCGTCGATGGAGTCGTAGCGGAGCGGGGGTGTTTTCGAGGCGTGGTACTTGGAGAGCACCT
CTGGGGCGTCGTCGTCGAGCCCAGGCGTTCCCTCACGGGTAGGCTTGGATTGGGTCTCGGATGGT
GTGTCATTGGACTTGGGTTCGGTGACCTTAGCCTGTTTATCCTTTTTGGTTTTGGCATCAGGTTT
GGTGTCCTTGGTGCCCTTGGGCTCCTTTGTCTTGGCCTTAGGCTCGTTGGACTCACCCTTTGCTT
CTTTGGGTTTGGCATCTTTACCCACGGATTCCTTGGACTTTGGTTTCTTGGATTTTGAGTCTTGG
CCCTTGGTATCCTTACCCTTGTCCTTAGCCTTGGATTCCTTGCCATTGTCGTCCTTAGCCTTAGG
TTCCTCAACCTTGTCATCCTTAGCCTTGGGTTCTTTAGCACCCTTAGGATCCTTAGTTTTAGAAT
CCTTGGCTTTAGCTCCCTTCACCTTAAGCCCATTCCCCTTCAATA
Right flanking sequence: Indices 142792 -- 143291
TTGGCAGGCTTCCCCAAGGCGGGAGACTGAGAGCGCGAGCCAGCTGGCGATGTGGCGGCCGACGG
AGCCCCACTCAAGATCCCCTTGGGCGTGATTTTCCCCGAGCCAATTGCCTTGATCGTGGCACCTC
CCTTGATCTGCTTGGCCTGGATCACCGTCTTCTCGTAGTGGGCCCGGCGCTCGGCCGCTTCTTTC
TCGTCCACGGGCGGCTTGGTGCGCCGCCGCCCACCGTCCTTGCCGCCCTTGCGTCCCATCTTGCG
TCCCCGTGCCCCTGCCTTGCTGTTTTTCAGCGGGATGAACTCGGTGATCCCCAACAACTCGTACA
AGAACAGGGGCTCGCCCTCAGCCACCCACTCGCGCTTGCCTCCGTGCTTCGCAATACACTCAGCA
CACATCACCAGGCCCTTGGACGCCAGCAATTGCTCGTCCGCATCGCACTTGTCGCAACTGAGGTC
GCGGAACTGGTAGTACTGGTCGAGCTTGGCAAACAACGTCCCGTT
Found at i:143636 original size:11 final size:11
Alignment explanation
Indices: 143608--143637 Score: 53
Period size: 10 Copynumber: 2.8 Consensus size: 11
143598 AGAGAAGAAC
143608 GGTGGAGAAGA
1 GGTGGAGAAGA
143619 GGT-GAGAAGA
1 GGTGGAGAAGA
143629 GGTGGAGAA
1 GGTGGAGAA
143638 AGGCGGGTGG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
10 10 0.56
11 8 0.44
ACGTcount: A:0.37, C:0.00, G:0.53, T:0.10
Consensus pattern (11 bp):
GGTGGAGAAGA
Left flanking sequence: Indices 143108 -- 143607
ACTCGTACAAGAACAGGGGCTCGCCCTCAGCCACCCACTCGCGCTTGCCTCCGTGCTTCGCAATA
CACTCAGCACACATCACCAGGCCCTTGGACGCCAGCAATTGCTCGTCCGCATCGCACTTGTCGCA
ACTGAGGTCGCGGAACTGGTAGTACTGGTCGAGCTTGGCAAACAACGTCCCGTTGGACAACAGGT
ACACCGCGGTCGGGGGATCGCCCCCGTTCTTGGCCTGGTCGCGGGCAGAACAGTCGCGACACACC
AACTGCATCTCGCTGAGCCCGTAGCGAACCACCTCGAGGACGTGGATGTTGACGTCACCGCACTC
CTCGCACGCCACGGTCTCGCCCTCGGACTCCACCAGCTTGTGGCGCGTCAGCGACAAGTGCCGGG
CGATGGCAGAGTTGTCGCCCTTTTCCTGGCACGTCAAGCAGGTGAACTCGGTCATGGTTGCCTTT
TCGCGCAGACGGTGTGTATAGAGGTGGTGGTGATAAGAGAAGAAC
Right flanking sequence: Indices 143638 -- 144137
AGGCGGGTGGTTCAGGGAAATGCTGGGTAGTCAACGCGTGGTAAGTACTTGGTGTGTCTTACTAA
GGGTGTTTCCATGGGTCGTTTCCTTAACTGATTGGTACTCTCTACGTGAAATATTCCATTACTTC
AGCAACCTGAAAATTCAAGCACCAACCATACACAGGTAATCGAAATAATCAAACCGGTCGAGTTG
TGGAAGAGACTGACAAAATAAACGAAAACATAAACGAAGCACATTCGCTTCAACTCTTCGAAGTA
ATCACATGGCAAAAACGAACACACACCAAATCAGCCTCTAAAAATCCACTACCACCAGTCCACAA
CCACCAGTCCACTACCACCAGTTCACTACCACGAATCAACCACCACCAACTACCCCACCTCCTTA
TTTCATTACATTCAAATACACCGTCTACTCTATCACTCTAGAAAATGTCCCCACACCCGGCCAAC
TTCTTGTCACGACGCTCGGGCCAGTACTTGCCGTTAAAGTCCCAG
Found at i:143959 original size:14 final size:14
Alignment explanation
Indices: 143942--143994 Score: 88
Period size: 14 Copynumber: 3.8 Consensus size: 14
143932 CCTCTAAAAA
143942 TCCACTACCACCAG
1 TCCACTACCACCAG
*
143956 TCCACAACCACCAG
1 TCCACTACCACCAG
143970 TCCACTACCACCAG
1 TCCACTACCACCAG
*
143984 TTCACTACCAC
1 TCCACTACCAC
143995 GAATCAACCA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
14 36 1.00
ACGTcount: A:0.30, C:0.49, G:0.06, T:0.15
Consensus pattern (14 bp):
TCCACTACCACCAG
Left flanking sequence: Indices 143442 -- 143941
CACGGTCTCGCCCTCGGACTCCACCAGCTTGTGGCGCGTCAGCGACAAGTGCCGGGCGATGGCAG
AGTTGTCGCCCTTTTCCTGGCACGTCAAGCAGGTGAACTCGGTCATGGTTGCCTTTTCGCGCAGA
CGGTGTGTATAGAGGTGGTGGTGATAAGAGAAGAACGGTGGAGAAGAGGTGAGAAGAGGTGGAGA
AAGGCGGGTGGTTCAGGGAAATGCTGGGTAGTCAACGCGTGGTAAGTACTTGGTGTGTCTTACTA
AGGGTGTTTCCATGGGTCGTTTCCTTAACTGATTGGTACTCTCTACGTGAAATATTCCATTACTT
CAGCAACCTGAAAATTCAAGCACCAACCATACACAGGTAATCGAAATAATCAAACCGGTCGAGTT
GTGGAAGAGACTGACAAAATAAACGAAAACATAAACGAAGCACATTCGCTTCAACTCTTCGAAGT
AATCACATGGCAAAAACGAACACACACCAAATCAGCCTCTAAAAA
Right flanking sequence: Indices 143995 -- 144494
GAATCAACCACCACCAACTACCCCACCTCCTTATTTCATTACATTCAAATACACCGTCTACTCTA
TCACTCTAGAAAATGTCCCCACACCCGGCCAACTTCTTGTCACGACGCTCGGGCCAGTACTTGCC
GTTAAAGTCCCAGTACTTGTCCCCGGTGACCTCGTGCACCCGCTGGGTGAACCAGTTGGGCTCGT
ACGACTCGTTGGACTGCTCACGGCGCTTGCGGGCCGCACGCTGCTTCTCCTCCAACCGGTGCTTC
TCGTCGGCCGCCTGGTCGTACCGGCCCTCCTCCATGTCCCGCTGGTCAGGCCGCAACCGGGTGTC
GGTGGGCGCCACCCACGGCAACAACTTGGGGTCCGGGTTGTTCAACGTCACCGCAAACGCCGTCA
AGTTGAACGGCACCTTGGGCCGCGGCGCCACCTGCCACACCAAAAACTTGCCGCCGGCGTAGGGG
TCGGTGGTGACCTTGCGCGAGTCGTTGGCCTCCACCAACAGCTGC
Found at i:144007 original size:28 final size:28
Alignment explanation
Indices: 143948--144010 Score: 72
Period size: 28 Copynumber: 2.2 Consensus size: 28
143938 AAAATCCACT
* * *
143948 ACCACCAGTCCACAACCACCAGTCCACT
1 ACCACCAGTCCACAACCACCAATCAACC
* * *
143976 ACCACCAGTTCACTACCACGAATCAACC
1 ACCACCAGTCCACAACCACCAATCAACC
144004 ACCACCA
1 ACCACCA
144011 ACTACCCCAC
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.35, C:0.48, G:0.06, T:0.11
Consensus pattern (28 bp):
ACCACCAGTCCACAACCACCAATCAACC
Left flanking sequence: Indices 143448 -- 143947
CTCGCCCTCGGACTCCACCAGCTTGTGGCGCGTCAGCGACAAGTGCCGGGCGATGGCAGAGTTGT
CGCCCTTTTCCTGGCACGTCAAGCAGGTGAACTCGGTCATGGTTGCCTTTTCGCGCAGACGGTGT
GTATAGAGGTGGTGGTGATAAGAGAAGAACGGTGGAGAAGAGGTGAGAAGAGGTGGAGAAAGGCG
GGTGGTTCAGGGAAATGCTGGGTAGTCAACGCGTGGTAAGTACTTGGTGTGTCTTACTAAGGGTG
TTTCCATGGGTCGTTTCCTTAACTGATTGGTACTCTCTACGTGAAATATTCCATTACTTCAGCAA
CCTGAAAATTCAAGCACCAACCATACACAGGTAATCGAAATAATCAAACCGGTCGAGTTGTGGAA
GAGACTGACAAAATAAACGAAAACATAAACGAAGCACATTCGCTTCAACTCTTCGAAGTAATCAC
ATGGCAAAAACGAACACACACCAAATCAGCCTCTAAAAATCCACT
Right flanking sequence: Indices 144011 -- 144510
ACTACCCCACCTCCTTATTTCATTACATTCAAATACACCGTCTACTCTATCACTCTAGAAAATGT
CCCCACACCCGGCCAACTTCTTGTCACGACGCTCGGGCCAGTACTTGCCGTTAAAGTCCCAGTAC
TTGTCCCCGGTGACCTCGTGCACCCGCTGGGTGAACCAGTTGGGCTCGTACGACTCGTTGGACTG
CTCACGGCGCTTGCGGGCCGCACGCTGCTTCTCCTCCAACCGGTGCTTCTCGTCGGCCGCCTGGT
CGTACCGGCCCTCCTCCATGTCCCGCTGGTCAGGCCGCAACCGGGTGTCGGTGGGCGCCACCCAC
GGCAACAACTTGGGGTCCGGGTTGTTCAACGTCACCGCAAACGCCGTCAAGTTGAACGGCACCTT
GGGCCGCGGCGCCACCTGCCACACCAAAAACTTGCCGCCGGCGTAGGGGTCGGTGGTGACCTTGC
GCGAGTCGTTGGCCTCCACCAACAGCTGCTTGCGGTCGTGCAGCC
Found at i:145506 original size:15 final size:14
Alignment explanation
Indices: 145485--145532 Score: 64
Period size: 15 Copynumber: 3.4 Consensus size: 14
145475 CGGGTGGGTG
145485 GCAGCAGCACCAGC
1 GCAGCAGCACCAGC
145499 GCCAGCAGCACCA--
1 G-CAGCAGCACCAGC
145512 GCAGCAGCACCAGC
1 GCAGCAGCACCAGC
145526 AGCAGCA
1 -GCAGCA
145533 CCGGTGGCAG
Statistics
Matches: 30, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
12 11 0.37
13 1 0.03
14 1 0.03
15 17 0.57
ACGTcount: A:0.31, C:0.42, G:0.27, T:0.00
Consensus pattern (14 bp):
GCAGCAGCACCAGC
Left flanking sequence: Indices 144985 -- 145484
GGCGGCAGTACTCAAACGTCTCGCCCAACAACGGGTTGAACGGCTTGGCAATACGGTCGATGGTC
AGCGCGTACTCGGACGCGGCAAACGTGGCCACGTAGATGAGCCGGAGCACCAGGTCGTCGTACTG
GCACGCGGTGTCCAACAAGTACAGGCACTCGACGTCCTCGACCAACCGCTGCAACAACAGCAGCG
GCTCGTTGAACAGCACCGGCAACGTCATCCGCGTCATGTCCTTGCCGATCATCAGCTTCAAAATG
CCCCACAACCCCACCTTGGGCCGGTTGTCCTCGTCCATGGCGAGCTTGGTCCGCGGCGGGTTCTC
GTACCCCAAGTACGACCCCTCCTCGGAGATCTGCTTGGCGATTTGTTGCTGGTCGGGGTTGGGGT
ACTCCAGCGTGTCCTCGGGCTCGTCGTGCGGCTCCTTGGTGGCGGGGTCCACCAGCTCGACCCGC
TTGCCTTCGGGGATCGCGTCGAGGTCGGGCGAGCCCGGGTGGGTG
Right flanking sequence: Indices 145533 -- 146032
CCGGTGGCAGCACCAGTGGTAGAACCAGTGGAAGAACTAGTGGTGGAGTCAGAAGGCTCGGAACG
CGCCTCCAGGTACTCGCCAGACTCGGACTGGCTCATCTCCATGCTGTCGTCCTGGCGCGGCTCGT
GGCTTCTAGCCTGGCTAGCCTGTTTGTCAGTCTGTCTAGCCTGGCTCTCCTGTCTCTCAGCCTGT
CTAGCCTGGCTCTCCTCCTGTCTCTCCTGTCTAGCTTGGCTCTCGGTCTCCAGTCTCTGGCTCTC
CTGGCTCTCCTCGCTTCTCAGACCCACCATGTTCTGCGCCATCGCCGTCGGGCTCATGTAGCGCT
GGCCCTGAGGCGGCGGGCTGGTGGGCGACATCGCCTCCGCCCGCTCTGCCCGCGCCTGCGGCGGG
CGCGGCGCCACAAACTGGTCGTTGTCGTCGTCGCTCTCGTCGTCCTCAAACTCCAGCGCGTCAAA
GAACTCGTCGTCCAGGTCGGTCTTCAAGATCTCCTCGAGCGCCGG
Found at i:145516 original size:12 final size:12
Alignment explanation
Indices: 145485--145548 Score: 74
Period size: 12 Copynumber: 5.1 Consensus size: 12
145475 CGGGTGGGTG
145485 GCAGCAGCACCA
1 GCAGCAGCACCA
145497 GCGCCAGCAGCACCA
1 --G-CAGCAGCACCA
145512 GCAGCAGCACCA
1 GCAGCAGCACCA
*
145524 GCAGCAGCACCG
1 GCAGCAGCACCA
**
145536 GTGGCAGCACCA
1 GCAGCAGCACCA
145548 G
1 G
145549 TGGTAGAACC
Statistics
Matches: 45, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
12 32 0.71
13 1 0.02
14 1 0.02
15 11 0.24
ACGTcount: A:0.28, C:0.41, G:0.30, T:0.02
Consensus pattern (12 bp):
GCAGCAGCACCA
Left flanking sequence: Indices 144985 -- 145484
GGCGGCAGTACTCAAACGTCTCGCCCAACAACGGGTTGAACGGCTTGGCAATACGGTCGATGGTC
AGCGCGTACTCGGACGCGGCAAACGTGGCCACGTAGATGAGCCGGAGCACCAGGTCGTCGTACTG
GCACGCGGTGTCCAACAAGTACAGGCACTCGACGTCCTCGACCAACCGCTGCAACAACAGCAGCG
GCTCGTTGAACAGCACCGGCAACGTCATCCGCGTCATGTCCTTGCCGATCATCAGCTTCAAAATG
CCCCACAACCCCACCTTGGGCCGGTTGTCCTCGTCCATGGCGAGCTTGGTCCGCGGCGGGTTCTC
GTACCCCAAGTACGACCCCTCCTCGGAGATCTGCTTGGCGATTTGTTGCTGGTCGGGGTTGGGGT
ACTCCAGCGTGTCCTCGGGCTCGTCGTGCGGCTCCTTGGTGGCGGGGTCCACCAGCTCGACCCGC
TTGCCTTCGGGGATCGCGTCGAGGTCGGGCGAGCCCGGGTGGGTG
Right flanking sequence: Indices 145549 -- 146048
TGGTAGAACCAGTGGAAGAACTAGTGGTGGAGTCAGAAGGCTCGGAACGCGCCTCCAGGTACTCG
CCAGACTCGGACTGGCTCATCTCCATGCTGTCGTCCTGGCGCGGCTCGTGGCTTCTAGCCTGGCT
AGCCTGTTTGTCAGTCTGTCTAGCCTGGCTCTCCTGTCTCTCAGCCTGTCTAGCCTGGCTCTCCT
CCTGTCTCTCCTGTCTAGCTTGGCTCTCGGTCTCCAGTCTCTGGCTCTCCTGGCTCTCCTCGCTT
CTCAGACCCACCATGTTCTGCGCCATCGCCGTCGGGCTCATGTAGCGCTGGCCCTGAGGCGGCGG
GCTGGTGGGCGACATCGCCTCCGCCCGCTCTGCCCGCGCCTGCGGCGGGCGCGGCGCCACAAACT
GGTCGTTGTCGTCGTCGCTCTCGTCGTCCTCAAACTCCAGCGCGTCAAAGAACTCGTCGTCCAGG
TCGGTCTTCAAGATCTCCTCGAGCGCCGGGTTGGCGGGCCCGCCC
Found at i:145551 original size:12 final size:12
Alignment explanation
Indices: 145503--145563 Score: 59
Period size: 12 Copynumber: 5.1 Consensus size: 12
145493 ACCAGCGCCA
**
145503 GCAGCACCAGCA
1 GCAGCACCAGTG
**
145515 GCAGCACCAGCA
1 GCAGCACCAGTG
*
145527 GCAGCACCGGTG
1 GCAGCACCAGTG
145539 GCAGCACCAGTG
1 GCAGCACCAGTG
* *
145551 GTAGAACCAGTG
1 GCAGCACCAGTG
145563 G
1 G
145564 AAGAACTAGT
Statistics
Matches: 43, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
12 43 1.00
ACGTcount: A:0.28, C:0.33, G:0.33, T:0.07
Consensus pattern (12 bp):
GCAGCACCAGTG
Left flanking sequence: Indices 145003 -- 145502
TCTCGCCCAACAACGGGTTGAACGGCTTGGCAATACGGTCGATGGTCAGCGCGTACTCGGACGCG
GCAAACGTGGCCACGTAGATGAGCCGGAGCACCAGGTCGTCGTACTGGCACGCGGTGTCCAACAA
GTACAGGCACTCGACGTCCTCGACCAACCGCTGCAACAACAGCAGCGGCTCGTTGAACAGCACCG
GCAACGTCATCCGCGTCATGTCCTTGCCGATCATCAGCTTCAAAATGCCCCACAACCCCACCTTG
GGCCGGTTGTCCTCGTCCATGGCGAGCTTGGTCCGCGGCGGGTTCTCGTACCCCAAGTACGACCC
CTCCTCGGAGATCTGCTTGGCGATTTGTTGCTGGTCGGGGTTGGGGTACTCCAGCGTGTCCTCGG
GCTCGTCGTGCGGCTCCTTGGTGGCGGGGTCCACCAGCTCGACCCGCTTGCCTTCGGGGATCGCG
TCGAGGTCGGGCGAGCCCGGGTGGGTGGCAGCAGCACCAGCGCCA
Right flanking sequence: Indices 145564 -- 146063
AAGAACTAGTGGTGGAGTCAGAAGGCTCGGAACGCGCCTCCAGGTACTCGCCAGACTCGGACTGG
CTCATCTCCATGCTGTCGTCCTGGCGCGGCTCGTGGCTTCTAGCCTGGCTAGCCTGTTTGTCAGT
CTGTCTAGCCTGGCTCTCCTGTCTCTCAGCCTGTCTAGCCTGGCTCTCCTCCTGTCTCTCCTGTC
TAGCTTGGCTCTCGGTCTCCAGTCTCTGGCTCTCCTGGCTCTCCTCGCTTCTCAGACCCACCATG
TTCTGCGCCATCGCCGTCGGGCTCATGTAGCGCTGGCCCTGAGGCGGCGGGCTGGTGGGCGACAT
CGCCTCCGCCCGCTCTGCCCGCGCCTGCGGCGGGCGCGGCGCCACAAACTGGTCGTTGTCGTCGT
CGCTCTCGTCGTCCTCAAACTCCAGCGCGTCAAAGAACTCGTCGTCCAGGTCGGTCTTCAAGATC
TCCTCGAGCGCCGGGTTGGCGGGCCCGCCCTCGTTGGGCGTGTTG
Found at i:145724 original size:21 final size:21
Alignment explanation
Indices: 145700--145801 Score: 63
Period size: 21 Copynumber: 5.0 Consensus size: 21
145690 CAGTCTGTCT
*
145700 AGCCTGGCTCTCCTGTCTCTC
1 AGCCTGGCTCTCCTGGCTCTC
* **
145721 AGCCTGTCTAGCCTGGCTCTC
1 AGCCTGGCTCTCCTGGCTCTC
** *
145742 CTCCTGTCTCTCCT-G-TCT-
1 AGCCTGGCTCTCCTGGCTCTC
*
145760 AGCTTGGCTCT-C-GG-TCTCC
1 AGCCTGGCTCTCCTGGCTCT-C
145779 AGTCTCTGGCTCTCCTGGCTCTC
1 AG-C-CTGGCTCTCCTGGCTCTC
145802 CTCGCTTCTC
Statistics
Matches: 60, Mismatches: 13, Indels: 14
0.69 0.15 0.16
Matches are distributed among these distances:
17 5 0.08
18 7 0.12
19 5 0.08
20 2 0.03
21 34 0.57
22 1 0.02
23 3 0.05
24 3 0.05
ACGTcount: A:0.05, C:0.40, G:0.21, T:0.34
Consensus pattern (21 bp):
AGCCTGGCTCTCCTGGCTCTC
Left flanking sequence: Indices 145200 -- 145699
AACGTCATCCGCGTCATGTCCTTGCCGATCATCAGCTTCAAAATGCCCCACAACCCCACCTTGGG
CCGGTTGTCCTCGTCCATGGCGAGCTTGGTCCGCGGCGGGTTCTCGTACCCCAAGTACGACCCCT
CCTCGGAGATCTGCTTGGCGATTTGTTGCTGGTCGGGGTTGGGGTACTCCAGCGTGTCCTCGGGC
TCGTCGTGCGGCTCCTTGGTGGCGGGGTCCACCAGCTCGACCCGCTTGCCTTCGGGGATCGCGTC
GAGGTCGGGCGAGCCCGGGTGGGTGGCAGCAGCACCAGCGCCAGCAGCACCAGCAGCAGCACCAG
CAGCAGCACCGGTGGCAGCACCAGTGGTAGAACCAGTGGAAGAACTAGTGGTGGAGTCAGAAGGC
TCGGAACGCGCCTCCAGGTACTCGCCAGACTCGGACTGGCTCATCTCCATGCTGTCGTCCTGGCG
CGGCTCGTGGCTTCTAGCCTGGCTAGCCTGTTTGTCAGTCTGTCT
Right flanking sequence: Indices 145802 -- 146301
CTCGCTTCTCAGACCCACCATGTTCTGCGCCATCGCCGTCGGGCTCATGTAGCGCTGGCCCTGAG
GCGGCGGGCTGGTGGGCGACATCGCCTCCGCCCGCTCTGCCCGCGCCTGCGGCGGGCGCGGCGCC
ACAAACTGGTCGTTGTCGTCGTCGCTCTCGTCGTCCTCAAACTCCAGCGCGTCAAAGAACTCGTC
GTCCAGGTCGGTCTTCAAGATCTCCTCGAGCGCCGGGTTGGCGGGCCCGCCCTCGTTGGGCGTGT
TGGCGCCCAGCTGCGTCAAGAGGTACTTCTTCAACTGCTTCTGCTTGCCGTCGTACTCGTTGAGC
TTCTCGTCGCGGTTCTGGATCTCCAGCTCCAACTGCTGGATCAGCGCCTCCCACAACCGGTTCAC
CTCGCGCTGGCGGTCCAACTGCTTCGACACCCGGGCGTCGCGGCCCTGGACAAGCGTGTGGTACT
GGCCAATGAGCTCGGAGAGAGCCCGCACCAGCGTCAACCCGGCCG
Found at i:145739 original size:30 final size:30
Alignment explanation
Indices: 145667--145771 Score: 113
Period size: 30 Copynumber: 3.5 Consensus size: 30
145657 GCTCGTGGCT
** * * *
145667 TCTAGCCTGGCTAGCCTGTTTGTCAGTCTG
1 TCTAGCCTGGCTCTCCTGTCTCTCAGCCTG
145697 TCTAGCCTGGCTCTCCTGTCTCTCAGCCTG
1 TCTAGCCTGGCTCTCCTGTCTCTCAGCCTG
* * *
145727 TCTAGCCTGGCTCTCCTCCTGTCTC-TCCTG
1 TCTAGCCTGGCTCTCCT-GTCTCTCAGCCTG
*
145757 TCTAGCTTGGCTCTC
1 TCTAGCCTGGCTCTC
145772 GGTCTCCAGT
Statistics
Matches: 65, Mismatches: 9, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
30 60 0.92
31 5 0.08
ACGTcount: A:0.07, C:0.36, G:0.21, T:0.36
Consensus pattern (30 bp):
TCTAGCCTGGCTCTCCTGTCTCTCAGCCTG
Left flanking sequence: Indices 145167 -- 145666
AACAACAGCAGCGGCTCGTTGAACAGCACCGGCAACGTCATCCGCGTCATGTCCTTGCCGATCAT
CAGCTTCAAAATGCCCCACAACCCCACCTTGGGCCGGTTGTCCTCGTCCATGGCGAGCTTGGTCC
GCGGCGGGTTCTCGTACCCCAAGTACGACCCCTCCTCGGAGATCTGCTTGGCGATTTGTTGCTGG
TCGGGGTTGGGGTACTCCAGCGTGTCCTCGGGCTCGTCGTGCGGCTCCTTGGTGGCGGGGTCCAC
CAGCTCGACCCGCTTGCCTTCGGGGATCGCGTCGAGGTCGGGCGAGCCCGGGTGGGTGGCAGCAG
CACCAGCGCCAGCAGCACCAGCAGCAGCACCAGCAGCAGCACCGGTGGCAGCACCAGTGGTAGAA
CCAGTGGAAGAACTAGTGGTGGAGTCAGAAGGCTCGGAACGCGCCTCCAGGTACTCGCCAGACTC
GGACTGGCTCATCTCCATGCTGTCGTCCTGGCGCGGCTCGTGGCT
Right flanking sequence: Indices 145772 -- 146271
GGTCTCCAGTCTCTGGCTCTCCTGGCTCTCCTCGCTTCTCAGACCCACCATGTTCTGCGCCATCG
CCGTCGGGCTCATGTAGCGCTGGCCCTGAGGCGGCGGGCTGGTGGGCGACATCGCCTCCGCCCGC
TCTGCCCGCGCCTGCGGCGGGCGCGGCGCCACAAACTGGTCGTTGTCGTCGTCGCTCTCGTCGTC
CTCAAACTCCAGCGCGTCAAAGAACTCGTCGTCCAGGTCGGTCTTCAAGATCTCCTCGAGCGCCG
GGTTGGCGGGCCCGCCCTCGTTGGGCGTGTTGGCGCCCAGCTGCGTCAAGAGGTACTTCTTCAAC
TGCTTCTGCTTGCCGTCGTACTCGTTGAGCTTCTCGTCGCGGTTCTGGATCTCCAGCTCCAACTG
CTGGATCAGCGCCTCCCACAACCGGTTCACCTCGCGCTGGCGGTCCAACTGCTTCGACACCCGGG
CGTCGCGGCCCTGGACAAGCGTGTGGTACTGGCCAATGAGCTCGG
Found at i:148420 original size:13 final size:13
Alignment explanation
Indices: 148402--148427 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
148392 GGTGTAGGGT
148402 TGACGGGATGTAG
1 TGACGGGATGTAG
148415 TGACGGGATGTAG
1 TGACGGGATGTAG
148428 GGCTGACGTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.08, G:0.46, T:0.23
Consensus pattern (13 bp):
TGACGGGATGTAG
Left flanking sequence: Indices 147902 -- 148401
CCGCGGGGCGCTCCAGGGTCCCAGCACTACGTGGGACCGCGTGGGGTGGTACTACGGACGGCACC
ACCGTGGTGGTGGGCCGTGGTGGCGGGTGTGGTGGTCGCAGTCGGCAATCGTAGCGTTCTGTGCC
GACCTGCGAGGCTCAGCACGGTTGCTACCACGAGCCATGATGGACGTGCACAGGAGCCCCGCCGA
GCAACGACAGGGTGGGGCCACCAACAATAGCCACGAGCCAACGGGTGCTGATCCCCCGGACGGTG
GCAGGTTCGATGCGTGGGTGTGCATAATGCCCGGCTCGCTAGCGTCGGCTCGAGGTGAAGAATGG
CTGCGCCCTGCTGCCGTCATTCGGTGCACGTTGGGCACGTCAGCCGGTGTTTTGTGTGATGGAGC
ACAATGAGATGGGATCTGGGTGACTACGCGCTTACAGGGGTGGTAGACTGTGGTTTTGTGGTTAA
TTGGGTGTGGAGGCGGTCATTTGAAGGAGATAACGGGTGTAGGGT
Right flanking sequence: Indices 148428 -- 148927
GGCTGACGTGGGTTTGAGGGGTTTGAGGGGTTTTGTTGGCTGTGTCGGAACGTGATCCGGGTCTG
ACGGAAGAGATCGGCTAGTGTGTTCACCGACACTGTGTGCCACTTTTCCGACGATAATCCGCTCG
TACTGGTGACACTCGCCCATTGTGCCTAAAGTAGAACAGTGCAGTGACTGTGCTCAAAACAGAGC
GAGACTCTGTTATTTAGACACCGGGTGTTTTCTTCACTCCACCCTCTACCATTCTCTACCGCATC
GCCTATCTCATCCCCCATCTCATCCCCTACCCCATCCCACCATACCTGTCTTCTCCCCACCTTAT
CCTCCTGCACACAGCCCCGATCGACCAAAGCTCGATCCCCACAGACATTCGTCGTCCCACTCCTC
GACCGTGGCCCGTGGCGCTTGATGAAACCCGCAACGCTATACATCCAGAACTTGAATGACCAGGT
CAACCGCGATATCATCAAACACTTGTTGTACATGCTTCTCCTGAC
Found at i:152844 original size:14 final size:14
Alignment explanation
Indices: 152825--152853 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
152815 AACAACGGGA
152825 GAATGTGGACAACT
1 GAATGTGGACAACT
152839 GAATGTGGACAACT
1 GAATGTGGACAACT
152853 G
1 G
152854 GGTAGTCACC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.34, C:0.14, G:0.31, T:0.21
Consensus pattern (14 bp):
GAATGTGGACAACT
Left flanking sequence: Indices 152325 -- 152824
GTGAGCACCACTCGCTCAAACGACAGGAGCCCGTAGTACGTTCGGGAAAGCCAGAGGGGAACGTG
GATGGCCACCATTTTCAGTTGTGATGCAGGCAACCGAGCTTAGTAATGAGCAAAGGCCGTGAAAA
ATCAAAGATGGGGGGAGCGACCAGCGCTATCGTGACGGGAAAGGGCTTGGTCGTACCTGTGTCAA
CGCACGCTGACAAACAATACTGCAACGAGGCTTGGGCTTCGATCGTGTCCTCGTTCGCTGTAGAT
CAGACGGTGGGAGATAGCGCGCTGAGCCTTAGCTTGTATGACGGACACGCATTATGCGAAGGAAG
GTTGATTATGTCGAGGTTGTTCGTATTTTGTGGGGAGTGAATGGGTGGTGAGAAACGGAAGGGTG
GCGAATCGGTGCTGCGGTTTGGGGTTGCAACGTATTTTGAGCCGGTGTCACACATGAAATTGTAT
GTGTGTTTGTATTTTTAGTAACTCGCCTATTTCGAAACAACGGGA
Right flanking sequence: Indices 152854 -- 153353
GGTAGTCACCTATTGTTGCGGGATGCCAACCACCGTGGAATTGTGTTCCACGGTCCCACTTGTGC
CCCGCAAAGCTTAATCTGGACGATAGCCAGGCACGTGGATCGTGCTTGTTGACGCTCGAGAGAGG
TGTGCAAATGCTACTGCGTAGTTGAATGTAAATGCGCGGGAAGCCTGCCACCATCACTCCTGTGG
ATCTAGCAACCTTGCGTTGGTTCCCCACACCGCTGGTAGTCTGGACCCTATAAATTTTATTGTCT
GCTTTGTCTCGCTCCGCAACCTACATTGCTTTTTCCAGATTTTATGCAAAAATAGATGGACGGCG
TTTCTTACCATGCCTTATCGTCAGACCACGGTGGCATTTGGGCAACTTCAGCGCAATTAGACTAT
TCTTGGCATTGCCACTTGTGTAAGCCGGTTCCCTTGGTGAATCTGGAGCACTGAGGTCACGCGTC
ACCTGACCTGACCAAATGACAAAACCGACCTGAGGGCGGACGATT
Found at i:182998 original size:102 final size:102
Alignment explanation
Indices: 182835--183028 Score: 282
Period size: 102 Copynumber: 1.9 Consensus size: 102
182825 ATCAGAAGTT
* * * *
182835 GGACCGGTAGAAGTAGTCAGCGACGTAGGACCAGTGGTGGTCAGCGACGTCGTAGGTGTAGTGTG
1 GGACCAGTAGAAGTAGTCAGCGACGTAGGACCAGTGGTAGTCAGCGACGTCGTAGGCGTAGTCTG
*
182900 AG-ACCCAGTGGTGTTCAGCGACGTGGTCCCGGAGGTC
66 AGTA-CCAGTGGTGTGCAGCGACGTGGTCCCGGAGGTC
* * *
182937 GGACCAGTAGACGTAGTCAGCGTCGTAGGACCAGTGGTAGTCGGCGACGTCGTAGGCGTAGTCTG
1 GGACCAGTAGAAGTAGTCAGCGACGTAGGACCAGTGGTAGTCAGCGACGTCGTAGGCGTAGTCTG
* *
183002 GGTACCGGTGGTGTGCAGCGACGTGGT
66 AGTACCAGTGGTGTGCAGCGACGTGGT
183029 AGGCGTAGTC
Statistics
Matches: 81, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
102 80 0.99
103 1 0.01
ACGTcount: A:0.19, C:0.21, G:0.41, T:0.20
Consensus pattern (102 bp):
GGACCAGTAGAAGTAGTCAGCGACGTAGGACCAGTGGTAGTCAGCGACGTCGTAGGCGTAGTCTG
AGTACCAGTGGTGTGCAGCGACGTGGTCCCGGAGGTC
Left flanking sequence: Indices 182335 -- 182834
AGCCAAGTACCGAAATCAGCGAAAGAAGTGAAAATTAAAATACGCGGTGCACTACCAGTGTGCAC
TTTCGAAAGTGGGTATCATTCTCTTAAACAAGTAGAATAAGAGTAGCGGCGAAAAAGATCAAACC
GAAGGAAAATAAGTGAGTGCGCGAGGCACCACCGGATTGAACTTGAATGACTGGGGTCAGGTATG
TGACATTTTCAGCGGTCGACGCGGACTTCATATGTGGCACATGATTGGTTTCGAGTGCCAATGAC
TCTGAATCAGGAGAAGGGATGGGCCCCACGGTTCTCTTGTTAATCATGTCGCACGTCTCCGAAAC
GGTTTCAGTCGTAGTGGCTGTAGTAGTTACCGTTTCAGTCTCGCGCTTAGTGACTGTCACTTCCT
TCTCGACCAGAGTGACAGTGACAGTCTTCGCGCCTTCTGTTACCGTGACGGTTATAGGAACACCG
GGCTCACAAGTCGGAATAGTTGAAGACAGTGTGGTATCAGAAGTT
Right flanking sequence: Indices 183029 -- 183528
AGGCGTAGTCTGAGTGCCAGTGGTGTGCAGCGACGTCGTAGGCGTAGTCTGGGTACCAGTGGTGT
GCAGCGACGTGGTAGGCGTAGTCTGGGTGCCAGTGGTGTGCAGCGACGTAGTAGGACCAGTAGAC
GTAGTCAGCGACGTAGGACCAGTGGTAGTCGGCGACGTCGTAGGCGTAGTCTGGGTACCAGTGGT
GTGCAGCGACGTGGTTGGCGTAGTCTGAGTACCAGTGGTGTGCAGCGACGTAGTAGGCGTAGTCT
GGGTACCAGTGGTGGTCAGCGACGTCGTAGGCGTAGTCTGGGTACCGGTAGTGTGCAGCGACGTG
GTAGGCGTAGTCTGGGTACCAGTGGTGTGCAGCGACGTAGTAGGCGTAGTCTGGGTACCAGTGGT
GGTCAGCGACGTCGTAGGCGTAGTCTGGGTACCGGTAGTGTGCAGCGACGTGGTAGGCGTAGTCT
GGGTGCCAGTGGTGTGCAGCGACGTAGTAGGACCAGTAGACGTAG
Found at i:183013 original size:39 final size:39
Alignment explanation
Indices: 182966--183514 Score: 386
Period size: 39 Copynumber: 13.7 Consensus size: 39
182956 GCGTCGTAGG
*
182966 ACCAGTGGTAGT-CGGCGACGTCGTAGGCGTAGTCTGGGT
1 ACCAGTGGT-GTGCAGCGACGTCGTAGGCGTAGTCTGGGT
* * *
183005 ACCGGTGGTGTGCAGCGACGTGGTAGGCGTAGTCTGAGT
1 ACCAGTGGTGTGCAGCGACGTCGTAGGCGTAGTCTGGGT
*
183044 GCCAGTGGTGTGCAGCGACGTCGTAGGCGTAGTCTGGGT
1 ACCAGTGGTGTGCAGCGACGTCGTAGGCGTAGTCTGGGT
*
183083 ACCAGTGGTGTGCAGCGACGTGGTAGGCGTAGTCTGGGT
1 ACCAGTGGTGTGCAGCGACGTCGTAGGCGTAGTCTGGGT
* * * *
183122 GCCAGTGGTGTGCAGCGACGTAGTAGGACCAGTAGAC-GTAGT
1 ACCAGTGGTGTGCAGCGACGTCGTAGG--C-GTAGTCTG-GGT
* * ** * * *
183164 CAGCGACGTAG-GACCAGTG--GTAGTCGGCG-ACGTCGTAGGCGT
1 -A-CCA-GTGGTGTGCAGCGACGTCGTAGGCGTA-GTC-T-GG-GT
* * * ** * *
183206 AGTC--TGG-GTACCAGTGGTGT-GCAGCGACGTGGT-TGGCGT
1 A-CCAGTGGTGT-GCAGCGACGTCGTAG-G-CGTAGTCTGG-GT
* *** ** * *
183245 AGTCTGAGTACCAGTGGTGTGCAGCGACGTAGTAGGCGTAGTCTGGGT
1 A--C-CAGT-GGTGTGCAGCG-A-CGTCGTA---GGCGTAGTCTGGGT
183293 ACCAGTGGTG-GTCAGCGACGTCGTAGGCGTAGTCTGGGT
1 ACCAGTGGTGTG-CAGCGACGTCGTAGGCGTAGTCTGGGT
* * *
183332 ACCGGTAGTGTGCAGCGACGTGGTAGGCGTAGTCTGGGT
1 ACCAGTGGTGTGCAGCGACGTCGTAGGCGTAGTCTGGGT
*
183371 ACCAGTGGTGTGCAGCGACGTAGTAGGCGTAGTCTGGGT
1 ACCAGTGGTGTGCAGCGACGTCGTAGGCGTAGTCTGGGT
183410 ACCAGTGGTG-GTCAGCGACGTCGTAGGCGTAGTCTGGGT
1 ACCAGTGGTGTG-CAGCGACGTCGTAGGCGTAGTCTGGGT
* * *
183449 ACCGGTAGTGTGCAGCGACGTGGTAGGCGTAGTCTGGGT
1 ACCAGTGGTGTGCAGCGACGTCGTAGGCGTAGTCTGGGT
* *
183488 GCCAGTGGTGTGCAGCGACGTAGTAGG
1 ACCAGTGGTGTGCAGCGACGTCGTAGG
183515 ACCAGTAGAC
Statistics
Matches: 409, Mismatches: 65, Indels: 72
0.75 0.12 0.13
Matches are distributed among these distances:
38 7 0.02
39 321 0.78
40 6 0.01
41 7 0.02
42 27 0.07
43 3 0.01
44 13 0.03
45 8 0.02
46 2 0.00
47 2 0.00
48 8 0.02
49 4 0.01
50 1 0.00
ACGTcount: A:0.17, C:0.19, G:0.42, T:0.22
Consensus pattern (39 bp):
ACCAGTGGTGTGCAGCGACGTCGTAGGCGTAGTCTGGGT
Left flanking sequence: Indices 182466 -- 182965
AAGGAAAATAAGTGAGTGCGCGAGGCACCACCGGATTGAACTTGAATGACTGGGGTCAGGTATGT
GACATTTTCAGCGGTCGACGCGGACTTCATATGTGGCACATGATTGGTTTCGAGTGCCAATGACT
CTGAATCAGGAGAAGGGATGGGCCCCACGGTTCTCTTGTTAATCATGTCGCACGTCTCCGAAACG
GTTTCAGTCGTAGTGGCTGTAGTAGTTACCGTTTCAGTCTCGCGCTTAGTGACTGTCACTTCCTT
CTCGACCAGAGTGACAGTGACAGTCTTCGCGCCTTCTGTTACCGTGACGGTTATAGGAACACCGG
GCTCACAAGTCGGAATAGTTGAAGACAGTGTGGTATCAGAAGTTGGACCGGTAGAAGTAGTCAGC
GACGTAGGACCAGTGGTGGTCAGCGACGTCGTAGGTGTAGTGTGAGACCCAGTGGTGTTCAGCGA
CGTGGTCCCGGAGGTCGGACCAGTAGACGTAGTCAGCGTCGTAGG
Right flanking sequence: Indices 183515 -- 184014
ACCAGTAGACGTAGTCAGCGACGTGGGACCAGTGGTAGTCAGCGACGTCGTAGGCGTAGTCTCAG
ATCCGGTGGTCGTCAGCGATGTGGTTTTAGACGTAGTGCTGGTGTTTGTGGTAGTCAGCTCAGAC
GTCGTGGGGGATGTCTCCGATGACGTAGACACGAAAACCGTCGGCGTAGTCCACGTGGTGATAGT
CACTGTTATACACGACAGGGGCGGAGGTGTGGAGGTGGTGGAAGACTCTGATGTAGGACCGGTGG
ACGTAGTCAGAGTCGTAGGACCAGTGGTGTGCAGCGACGTCGTAGGCGTATTCTGGGTGCCAGTG
GTGTGCAGCGACGTGGTAGGCGTAGTCTGGGTGCCAGTGGTGTGCAGCGACGTAGTAGGCGTAGT
CTGAGTGCCAGTGGTGTGCAGCGACGTCGTAGGCGTAGTCTGAGTGCCAGTGGTGTGCAGCGACG
TGGTAGGCGTAGTCTGGGTACCAGTGGTGTGCAGCGTAGTAGGAC
Found at i:183109 original size:117 final size:117
Alignment explanation
Indices: 182966--183514 Score: 448
Period size: 117 Copynumber: 4.6 Consensus size: 117
182956 GCGTCGTAGG
* * * *
182966 ACCAGTGGTAGT-CGGCGACGTCGTAGGCGTAGTCTGGGTACCGGTGGTGTGCAGCGACGTGGTA
1 ACCAGTGGT-GTGCAGCGACGTGGTAGGCGTAGTCTGGGTACCAGTGGTGTGCAGCGACGTAGTA
*
183030 GGCGTAGTCTGAGTGCCAGTGGT-GTGCAGCGACGTCGTAGGCGTAGTCTGGGT
65 GGCGTAGTCTGAGTACCAGTGGTGGT-CAGCGACGTCGTAGGCGTAGTCTGGGT
*
183083 ACCAGTGGTGTGCAGCGACGTGGTAGGCGTAGTCTGGGTGCCAGTGGTGTGCAGCGACGTAGTAG
1 ACCAGTGGTGTGCAGCGACGTGGTAGGCGTAGTCTGGGTACCAGTGGTGTGCAGCGACGTAGTAG
* * * * * *
183148 GACCAGTAGAC-GTAGT--CAGCGACGTAGGACCAGTG--GTAGTCGGCG-ACGTCGTAGGCGT
66 G--C-GTAGTCTG-AGTACCAGTG--GT-GG-TCAGCGACGTCGTAGGCGTA-GTC-T-GG-GT
* * * * * * *
183206 AGTC--TGG-GTACCAGTG--GTGTGCAGCGACGTGGT-TGGCGTAGTCTGAGTACCAGTGGTG-
1 A-CCAGTGGTGT-GCAGCGACGTG-GTAG-G-CGTAGTCTGG-GTA--C-CAGT---GGT-GTGC
* *
183264 TGC-AGCG-ACGTAGTAGGCGTAGTCTGGGTACCAGTGGTGGTCAGCGACGTCGTAGGCGTAGTC
53 AGCGA-CGTA-G---TAGGCGTAGTCTGAGTACCAGTGGTGGTCAGCGACGTCGTAGGCGTAGTC
183327 TGGGT
113 TGGGT
* *
183332 ACCGGTAGTGTGCAGCGACGTGGTAGGCGTAGTCTGGGTACCAGTGGTGTGCAGCGACGTAGTAG
1 ACCAGTGGTGTGCAGCGACGTGGTAGGCGTAGTCTGGGTACCAGTGGTGTGCAGCGACGTAGTAG
*
183397 GCGTAGTCTGGGTACCAGTGGTGGTCAGCGACGTCGTAGGCGTAGTCTGGGT
66 GCGTAGTCTGAGTACCAGTGGTGGTCAGCGACGTCGTAGGCGTAGTCTGGGT
* * *
183449 ACCGGTAGTGTGCAGCGACGTGGTAGGCGTAGTCTGGGTGCCAGTGGTGTGCAGCGACGTAGTAG
1 ACCAGTGGTGTGCAGCGACGTGGTAGGCGTAGTCTGGGTACCAGTGGTGTGCAGCGACGTAGTAG
183514 G
66 G
183515 ACCAGTAGAC
Statistics
Matches: 348, Mismatches: 37, Indels: 94
0.73 0.08 0.20
Matches are distributed among these distances:
116 2 0.01
117 178 0.51
118 4 0.01
119 6 0.02
120 31 0.09
121 8 0.02
122 18 0.05
123 13 0.04
124 2 0.01
125 2 0.01
126 14 0.04
127 16 0.05
128 10 0.03
129 30 0.09
130 6 0.02
131 4 0.01
132 4 0.01
ACGTcount: A:0.17, C:0.19, G:0.42, T:0.22
Consensus pattern (117 bp):
ACCAGTGGTGTGCAGCGACGTGGTAGGCGTAGTCTGGGTACCAGTGGTGTGCAGCGACGTAGTAG
GCGTAGTCTGAGTACCAGTGGTGGTCAGCGACGTCGTAGGCGTAGTCTGGGT
Left flanking sequence: Indices 182466 -- 182965
AAGGAAAATAAGTGAGTGCGCGAGGCACCACCGGATTGAACTTGAATGACTGGGGTCAGGTATGT
GACATTTTCAGCGGTCGACGCGGACTTCATATGTGGCACATGATTGGTTTCGAGTGCCAATGACT
CTGAATCAGGAGAAGGGATGGGCCCCACGGTTCTCTTGTTAATCATGTCGCACGTCTCCGAAACG
GTTTCAGTCGTAGTGGCTGTAGTAGTTACCGTTTCAGTCTCGCGCTTAGTGACTGTCACTTCCTT
CTCGACCAGAGTGACAGTGACAGTCTTCGCGCCTTCTGTTACCGTGACGGTTATAGGAACACCGG
GCTCACAAGTCGGAATAGTTGAAGACAGTGTGGTATCAGAAGTTGGACCGGTAGAAGTAGTCAGC
GACGTAGGACCAGTGGTGGTCAGCGACGTCGTAGGTGTAGTGTGAGACCCAGTGGTGTTCAGCGA
CGTGGTCCCGGAGGTCGGACCAGTAGACGTAGTCAGCGTCGTAGG
Right flanking sequence: Indices 183515 -- 184014
ACCAGTAGACGTAGTCAGCGACGTGGGACCAGTGGTAGTCAGCGACGTCGTAGGCGTAGTCTCAG
ATCCGGTGGTCGTCAGCGATGTGGTTTTAGACGTAGTGCTGGTGTTTGTGGTAGTCAGCTCAGAC
GTCGTGGGGGATGTCTCCGATGACGTAGACACGAAAACCGTCGGCGTAGTCCACGTGGTGATAGT
CACTGTTATACACGACAGGGGCGGAGGTGTGGAGGTGGTGGAAGACTCTGATGTAGGACCGGTGG
ACGTAGTCAGAGTCGTAGGACCAGTGGTGTGCAGCGACGTCGTAGGCGTATTCTGGGTGCCAGTG
GTGTGCAGCGACGTGGTAGGCGTAGTCTGGGTGCCAGTGGTGTGCAGCGACGTAGTAGGCGTAGT
CTGAGTGCCAGTGGTGTGCAGCGACGTCGTAGGCGTAGTCTGAGTGCCAGTGGTGTGCAGCGACG
TGGTAGGCGTAGTCTGGGTACCAGTGGTGTGCAGCGTAGTAGGAC
Found at i:183193 original size:24 final size:26
Alignment explanation
Indices: 183144--183196 Score: 74
Period size: 24 Copynumber: 2.1 Consensus size: 26
183134 CAGCGACGTA
183144 GTAGGACCAGTAGACGTAGTCAGCGAC
1 GTAGGACCAGTAGA-GTAGTCAGCGAC
*
183171 GTAGGACCAGT-G-GTAGTCGGCGAC
1 GTAGGACCAGTAGAGTAGTCAGCGAC
183195 GT
1 GT
183197 CGTAGGCGTA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
24 13 0.52
26 1 0.04
27 11 0.44
ACGTcount: A:0.25, C:0.21, G:0.38, T:0.17
Consensus pattern (26 bp):
GTAGGACCAGTAGAGTAGTCAGCGAC
Left flanking sequence: Indices 182644 -- 183143
CGCACGTCTCCGAAACGGTTTCAGTCGTAGTGGCTGTAGTAGTTACCGTTTCAGTCTCGCGCTTA
GTGACTGTCACTTCCTTCTCGACCAGAGTGACAGTGACAGTCTTCGCGCCTTCTGTTACCGTGAC
GGTTATAGGAACACCGGGCTCACAAGTCGGAATAGTTGAAGACAGTGTGGTATCAGAAGTTGGAC
CGGTAGAAGTAGTCAGCGACGTAGGACCAGTGGTGGTCAGCGACGTCGTAGGTGTAGTGTGAGAC
CCAGTGGTGTTCAGCGACGTGGTCCCGGAGGTCGGACCAGTAGACGTAGTCAGCGTCGTAGGACC
AGTGGTAGTCGGCGACGTCGTAGGCGTAGTCTGGGTACCGGTGGTGTGCAGCGACGTGGTAGGCG
TAGTCTGAGTGCCAGTGGTGTGCAGCGACGTCGTAGGCGTAGTCTGGGTACCAGTGGTGTGCAGC
GACGTGGTAGGCGTAGTCTGGGTGCCAGTGGTGTGCAGCGACGTA
Right flanking sequence: Indices 183197 -- 183696
CGTAGGCGTAGTCTGGGTACCAGTGGTGTGCAGCGACGTGGTTGGCGTAGTCTGAGTACCAGTGG
TGTGCAGCGACGTAGTAGGCGTAGTCTGGGTACCAGTGGTGGTCAGCGACGTCGTAGGCGTAGTC
TGGGTACCGGTAGTGTGCAGCGACGTGGTAGGCGTAGTCTGGGTACCAGTGGTGTGCAGCGACGT
AGTAGGCGTAGTCTGGGTACCAGTGGTGGTCAGCGACGTCGTAGGCGTAGTCTGGGTACCGGTAG
TGTGCAGCGACGTGGTAGGCGTAGTCTGGGTGCCAGTGGTGTGCAGCGACGTAGTAGGACCAGTA
GACGTAGTCAGCGACGTGGGACCAGTGGTAGTCAGCGACGTCGTAGGCGTAGTCTCAGATCCGGT
GGTCGTCAGCGATGTGGTTTTAGACGTAGTGCTGGTGTTTGTGGTAGTCAGCTCAGACGTCGTGG
GGGATGTCTCCGATGACGTAGACACGAAAACCGTCGGCGTAGTCC
Found at i:183200 original size:27 final size:27
Alignment explanation
Indices: 183123--183202 Score: 78
Period size: 27 Copynumber: 3.0 Consensus size: 27
183113 AGTCTGGGTG
*
183123 CCAGTGGT-GTGCAGCGACGTAGTAGGA
1 CCAGTGGTAGT-CAGCGACGTCGTAGGA
183150 CCAGTAGACGTAGTCAGCGA---CGTAGGA
1 CCAGT-G--GTAGTCAGCGACGTCGTAGGA
*
183177 CCAGTGGTAGTCGGCGACGTCGTAGG
1 CCAGTGGTAGTCAGCGACGTCGTAGG
183203 CGTAGTCTGG
Statistics
Matches: 44, Mismatches: 2, Indels: 14
0.73 0.03 0.23
Matches are distributed among these distances:
24 10 0.23
26 1 0.02
27 22 0.50
28 1 0.02
30 8 0.18
31 2 0.05
ACGTcount: A:0.23, C:0.21, G:0.39, T:0.17
Consensus pattern (27 bp):
CCAGTGGTAGTCAGCGACGTCGTAGGA
Left flanking sequence: Indices 182623 -- 183122
CGGTTCTCTTGTTAATCATGTCGCACGTCTCCGAAACGGTTTCAGTCGTAGTGGCTGTAGTAGTT
ACCGTTTCAGTCTCGCGCTTAGTGACTGTCACTTCCTTCTCGACCAGAGTGACAGTGACAGTCTT
CGCGCCTTCTGTTACCGTGACGGTTATAGGAACACCGGGCTCACAAGTCGGAATAGTTGAAGACA
GTGTGGTATCAGAAGTTGGACCGGTAGAAGTAGTCAGCGACGTAGGACCAGTGGTGGTCAGCGAC
GTCGTAGGTGTAGTGTGAGACCCAGTGGTGTTCAGCGACGTGGTCCCGGAGGTCGGACCAGTAGA
CGTAGTCAGCGTCGTAGGACCAGTGGTAGTCGGCGACGTCGTAGGCGTAGTCTGGGTACCGGTGG
TGTGCAGCGACGTGGTAGGCGTAGTCTGAGTGCCAGTGGTGTGCAGCGACGTCGTAGGCGTAGTC
TGGGTACCAGTGGTGTGCAGCGACGTGGTAGGCGTAGTCTGGGTG
Right flanking sequence: Indices 183203 -- 183702
CGTAGTCTGGGTACCAGTGGTGTGCAGCGACGTGGTTGGCGTAGTCTGAGTACCAGTGGTGTGCA
GCGACGTAGTAGGCGTAGTCTGGGTACCAGTGGTGGTCAGCGACGTCGTAGGCGTAGTCTGGGTA
CCGGTAGTGTGCAGCGACGTGGTAGGCGTAGTCTGGGTACCAGTGGTGTGCAGCGACGTAGTAGG
CGTAGTCTGGGTACCAGTGGTGGTCAGCGACGTCGTAGGCGTAGTCTGGGTACCGGTAGTGTGCA
GCGACGTGGTAGGCGTAGTCTGGGTGCCAGTGGTGTGCAGCGACGTAGTAGGACCAGTAGACGTA
GTCAGCGACGTGGGACCAGTGGTAGTCAGCGACGTCGTAGGCGTAGTCTCAGATCCGGTGGTCGT
CAGCGATGTGGTTTTAGACGTAGTGCTGGTGTTTGTGGTAGTCAGCTCAGACGTCGTGGGGGATG
TCTCCGATGACGTAGACACGAAAACCGTCGGCGTAGTCCACGTGG
Found at i:183556 original size:24 final size:26
Alignment explanation
Indices: 183489--183562 Score: 82
Period size: 24 Copynumber: 2.8 Consensus size: 26
183479 AGTCTGGGTG
183489 CCAGTGGT-GTGCAGCGACGTAGTAGGA
1 CCAGTGGTAGT-CAGCGACGTAG-AGGA
183516 CCAGTAGACGTAGTCAGCGACGT-G-GGA
1 CCAGT-G--GTAGTCAGCGACGTAGAGGA
183543 CCAGTGGTAGTCAGCGACGT
1 CCAGTGGTAGTCAGCGACGT
183563 CGTAGGCGTA
Statistics
Matches: 43, Mismatches: 0, Indels: 11
0.80 0.00 0.20
Matches are distributed among these distances:
24 14 0.33
26 1 0.02
27 13 0.30
28 1 0.02
29 1 0.02
30 11 0.26
31 2 0.05
ACGTcount: A:0.23, C:0.22, G:0.38, T:0.18
Consensus pattern (26 bp):
CCAGTGGTAGTCAGCGACGTAGAGGA
Left flanking sequence: Indices 182989 -- 183488
TAGGCGTAGTCTGGGTACCGGTGGTGTGCAGCGACGTGGTAGGCGTAGTCTGAGTGCCAGTGGTG
TGCAGCGACGTCGTAGGCGTAGTCTGGGTACCAGTGGTGTGCAGCGACGTGGTAGGCGTAGTCTG
GGTGCCAGTGGTGTGCAGCGACGTAGTAGGACCAGTAGACGTAGTCAGCGACGTAGGACCAGTGG
TAGTCGGCGACGTCGTAGGCGTAGTCTGGGTACCAGTGGTGTGCAGCGACGTGGTTGGCGTAGTC
TGAGTACCAGTGGTGTGCAGCGACGTAGTAGGCGTAGTCTGGGTACCAGTGGTGGTCAGCGACGT
CGTAGGCGTAGTCTGGGTACCGGTAGTGTGCAGCGACGTGGTAGGCGTAGTCTGGGTACCAGTGG
TGTGCAGCGACGTAGTAGGCGTAGTCTGGGTACCAGTGGTGGTCAGCGACGTCGTAGGCGTAGTC
TGGGTACCGGTAGTGTGCAGCGACGTGGTAGGCGTAGTCTGGGTG
Right flanking sequence: Indices 183563 -- 184062
CGTAGGCGTAGTCTCAGATCCGGTGGTCGTCAGCGATGTGGTTTTAGACGTAGTGCTGGTGTTTG
TGGTAGTCAGCTCAGACGTCGTGGGGGATGTCTCCGATGACGTAGACACGAAAACCGTCGGCGTA
GTCCACGTGGTGATAGTCACTGTTATACACGACAGGGGCGGAGGTGTGGAGGTGGTGGAAGACTC
TGATGTAGGACCGGTGGACGTAGTCAGAGTCGTAGGACCAGTGGTGTGCAGCGACGTCGTAGGCG
TATTCTGGGTGCCAGTGGTGTGCAGCGACGTGGTAGGCGTAGTCTGGGTGCCAGTGGTGTGCAGC
GACGTAGTAGGCGTAGTCTGAGTGCCAGTGGTGTGCAGCGACGTCGTAGGCGTAGTCTGAGTGCC
AGTGGTGTGCAGCGACGTGGTAGGCGTAGTCTGGGTACCAGTGGTGTGCAGCGTAGTAGGACCAG
TAGACGTAGTCAGAGTCGTAGGACCAGTGGTGGTCAGCGACGTCG
Found at i:183838 original size:39 final size:39
Alignment explanation
Indices: 183795--184005 Score: 359
Period size: 39 Copynumber: 5.4 Consensus size: 39
183785 AGTCGTAGGA
*
183795 CCAGTGGTGTGCAGCGACGTCGTAGGCGTATTCTGGGTG
1 CCAGTGGTGTGCAGCGACGTCGTAGGCGTAGTCTGGGTG
*
183834 CCAGTGGTGTGCAGCGACGTGGTAGGCGTAGTCTGGGTG
1 CCAGTGGTGTGCAGCGACGTCGTAGGCGTAGTCTGGGTG
* *
183873 CCAGTGGTGTGCAGCGACGTAGTAGGCGTAGTCTGAGTG
1 CCAGTGGTGTGCAGCGACGTCGTAGGCGTAGTCTGGGTG
*
183912 CCAGTGGTGTGCAGCGACGTCGTAGGCGTAGTCTGAGTG
1 CCAGTGGTGTGCAGCGACGTCGTAGGCGTAGTCTGGGTG
* *
183951 CCAGTGGTGTGCAGCGACGTGGTAGGCGTAGTCTGGGTA
1 CCAGTGGTGTGCAGCGACGTCGTAGGCGTAGTCTGGGTG
183990 CCAGTGGTGTGCAGCG
1 CCAGTGGTGTGCAGCG
184006 TAGTAGGACC
Statistics
Matches: 164, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 164 1.00
ACGTcount: A:0.15, C:0.19, G:0.43, T:0.23
Consensus pattern (39 bp):
CCAGTGGTGTGCAGCGACGTCGTAGGCGTAGTCTGGGTG
Left flanking sequence: Indices 183295 -- 183794
CAGTGGTGGTCAGCGACGTCGTAGGCGTAGTCTGGGTACCGGTAGTGTGCAGCGACGTGGTAGGC
GTAGTCTGGGTACCAGTGGTGTGCAGCGACGTAGTAGGCGTAGTCTGGGTACCAGTGGTGGTCAG
CGACGTCGTAGGCGTAGTCTGGGTACCGGTAGTGTGCAGCGACGTGGTAGGCGTAGTCTGGGTGC
CAGTGGTGTGCAGCGACGTAGTAGGACCAGTAGACGTAGTCAGCGACGTGGGACCAGTGGTAGTC
AGCGACGTCGTAGGCGTAGTCTCAGATCCGGTGGTCGTCAGCGATGTGGTTTTAGACGTAGTGCT
GGTGTTTGTGGTAGTCAGCTCAGACGTCGTGGGGGATGTCTCCGATGACGTAGACACGAAAACCG
TCGGCGTAGTCCACGTGGTGATAGTCACTGTTATACACGACAGGGGCGGAGGTGTGGAGGTGGTG
GAAGACTCTGATGTAGGACCGGTGGACGTAGTCAGAGTCGTAGGA
Right flanking sequence: Indices 184006 -- 184505
TAGTAGGACCAGTAGACGTAGTCAGAGTCGTAGGACCAGTGGTGGTCAGCGACGTCGTAGGCGTA
GTCTCAGATCCGGTGGTCGTCAGCGATGTGGTTTTAGACGTAGTGCTGGTGTTTGTGGTAGTCAG
CTCAGACGTCGTGGGGGATGTCTCCGATGACGTAGACACGAAAACCNGGGGATGTCTCCGATGAC
GTAGACACGAAAACCGTCGGCGTAGTCCACGTGGTGATAGTCACTGTTATACACGACAGGGGCGG
AGGTGTGGAGGTGGTGGAAGACTCTGATGTAGGACCGGTGGACGTAGTCAGAGTCGTAGGACCAG
TGGTGTGCAGCGACGTCGTAGGCGTATTCTGGGTGCCAGTGGTGTGCAGCGACGTGGTAGGCGTA
GTCTGGGTGCCAGTGGTGTGCAGCGACGTAGTAGGACCAGTAGACGTAGTCAGCGACGTAGGACC
AGTGGTAGTCGGCGACGTCGTAGGCGTAGTCTGGGTACCGGTAGT
Found at i:184001 original size:117 final size:117
Alignment explanation
Indices: 183795--184005 Score: 395
Period size: 117 Copynumber: 1.8 Consensus size: 117
183785 AGTCGTAGGA
* *
183795 CCAGTGGTGTGCAGCGACGTCGTAGGCGTATTCTGGGTGCCAGTGGTGTGCAGCGACGTGGTAGG
1 CCAGTGGTGTGCAGCGACGTCGTAGGCGTAGTCTGAGTGCCAGTGGTGTGCAGCGACGTGGTAGG
*
183860 CGTAGTCTGGGTGCCAGTGGTGTGCAGCGACGTAGTAGGCGTAGTCTGAGTG
66 CGTAGTCTGGGTACCAGTGGTGTGCAGCGACGTAGTAGGCGTAGTCTGAGTG
183912 CCAGTGGTGTGCAGCGACGTCGTAGGCGTAGTCTGAGTGCCAGTGGTGTGCAGCGACGTGGTAGG
1 CCAGTGGTGTGCAGCGACGTCGTAGGCGTAGTCTGAGTGCCAGTGGTGTGCAGCGACGTGGTAGG
183977 CGTAGTCTGGGTACCAGTGGTGTGCAGCG
66 CGTAGTCTGGGTACCAGTGGTGTGCAGCG
184006 TAGTAGGACC
Statistics
Matches: 91, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
117 91 1.00
ACGTcount: A:0.15, C:0.19, G:0.43, T:0.23
Consensus pattern (117 bp):
CCAGTGGTGTGCAGCGACGTCGTAGGCGTAGTCTGAGTGCCAGTGGTGTGCAGCGACGTGGTAGG
CGTAGTCTGGGTACCAGTGGTGTGCAGCGACGTAGTAGGCGTAGTCTGAGTG
Left flanking sequence: Indices 183295 -- 183794
CAGTGGTGGTCAGCGACGTCGTAGGCGTAGTCTGGGTACCGGTAGTGTGCAGCGACGTGGTAGGC
GTAGTCTGGGTACCAGTGGTGTGCAGCGACGTAGTAGGCGTAGTCTGGGTACCAGTGGTGGTCAG
CGACGTCGTAGGCGTAGTCTGGGTACCGGTAGTGTGCAGCGACGTGGTAGGCGTAGTCTGGGTGC
CAGTGGTGTGCAGCGACGTAGTAGGACCAGTAGACGTAGTCAGCGACGTGGGACCAGTGGTAGTC
AGCGACGTCGTAGGCGTAGTCTCAGATCCGGTGGTCGTCAGCGATGTGGTTTTAGACGTAGTGCT
GGTGTTTGTGGTAGTCAGCTCAGACGTCGTGGGGGATGTCTCCGATGACGTAGACACGAAAACCG
TCGGCGTAGTCCACGTGGTGATAGTCACTGTTATACACGACAGGGGCGGAGGTGTGGAGGTGGTG
GAAGACTCTGATGTAGGACCGGTGGACGTAGTCAGAGTCGTAGGA
Right flanking sequence: Indices 184006 -- 184505
TAGTAGGACCAGTAGACGTAGTCAGAGTCGTAGGACCAGTGGTGGTCAGCGACGTCGTAGGCGTA
GTCTCAGATCCGGTGGTCGTCAGCGATGTGGTTTTAGACGTAGTGCTGGTGTTTGTGGTAGTCAG
CTCAGACGTCGTGGGGGATGTCTCCGATGACGTAGACACGAAAACCNGGGGATGTCTCCGATGAC
GTAGACACGAAAACCGTCGGCGTAGTCCACGTGGTGATAGTCACTGTTATACACGACAGGGGCGG
AGGTGTGGAGGTGGTGGAAGACTCTGATGTAGGACCGGTGGACGTAGTCAGAGTCGTAGGACCAG
TGGTGTGCAGCGACGTCGTAGGCGTATTCTGGGTGCCAGTGGTGTGCAGCGACGTGGTAGGCGTA
GTCTGGGTGCCAGTGGTGTGCAGCGACGTAGTAGGACCAGTAGACGTAGTCAGCGACGTAGGACC
AGTGGTAGTCGGCGACGTCGTAGGCGTAGTCTGGGTACCGGTAGT
Found at i:184192 original size:34 final size:33
Alignment explanation
Indices: 184149--184216 Score: 127
Period size: 34 Copynumber: 2.0 Consensus size: 33
184139 AGACGTCGTG
184149 GGGGATGTCTCCGATGACGTAGACACGAAAACC
1 GGGGATGTCTCCGATGACGTAGACACGAAAACC
184182 NGGGGATGTCTCCGATGACGTAGACACGAAAACC
1 -GGGGATGTCTCCGATGACGTAGACACGAAAACC
184216 G
1 G
184217 TCGGCGTAGT
Statistics
Matches: 34, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
33 1 0.03
34 33 0.97
ACGTcount: A:0.29, C:0.24, G:0.31, T:0.15
Consensus pattern (33 bp):
GGGGATGTCTCCGATGACGTAGACACGAAAACC
Left flanking sequence: Indices 183649 -- 184148
TGGGGGATGTCTCCGATGACGTAGACACGAAAACCGTCGGCGTAGTCCACGTGGTGATAGTCACT
GTTATACACGACAGGGGCGGAGGTGTGGAGGTGGTGGAAGACTCTGATGTAGGACCGGTGGACGT
AGTCAGAGTCGTAGGACCAGTGGTGTGCAGCGACGTCGTAGGCGTATTCTGGGTGCCAGTGGTGT
GCAGCGACGTGGTAGGCGTAGTCTGGGTGCCAGTGGTGTGCAGCGACGTAGTAGGCGTAGTCTGA
GTGCCAGTGGTGTGCAGCGACGTCGTAGGCGTAGTCTGAGTGCCAGTGGTGTGCAGCGACGTGGT
AGGCGTAGTCTGGGTACCAGTGGTGTGCAGCGTAGTAGGACCAGTAGACGTAGTCAGAGTCGTAG
GACCAGTGGTGGTCAGCGACGTCGTAGGCGTAGTCTCAGATCCGGTGGTCGTCAGCGATGTGGTT
TTAGACGTAGTGCTGGTGTTTGTGGTAGTCAGCTCAGACGTCGTG
Right flanking sequence: Indices 184217 -- 184716
TCGGCGTAGTCCACGTGGTGATAGTCACTGTTATACACGACAGGGGCGGAGGTGTGGAGGTGGTG
GAAGACTCTGATGTAGGACCGGTGGACGTAGTCAGAGTCGTAGGACCAGTGGTGTGCAGCGACGT
CGTAGGCGTATTCTGGGTGCCAGTGGTGTGCAGCGACGTGGTAGGCGTAGTCTGGGTGCCAGTGG
TGTGCAGCGACGTAGTAGGACCAGTAGACGTAGTCAGCGACGTAGGACCAGTGGTAGTCGGCGAC
GTCGTAGGCGTAGTCTGGGTACCGGTAGTGTGCAGCGACGTGGTGGGCGTAGTCTGAGTGCCAGT
GGTGTGCAGCGACGTGGTAGGCGTAGTCTGAGTGCCAGTGGTGTGCAGCGACGTGGTAGGCGTAG
TCTGGGTACCAGTGGTGTGCAGCGTAGTAGGACCAGTAGACGTAGTCAGAGTCGTAGGACCAGTG
GTGGTCAGCGACGTGGTGGGCGTAGTCTGAGTGCCAGTAGTGTGC
Found at i:184370 original size:39 final size:39
Alignment explanation
Indices: 184327--184430 Score: 181
Period size: 39 Copynumber: 2.7 Consensus size: 39
184317 AGTCGTAGGA
* *
184327 CCAGTGGTGTGCAGCGACGTCGTAGGCGTATTCTGGGTG
1 CCAGTGGTGTGCAGCGACGTAGTAGGCGTAGTCTGGGTG
*
184366 CCAGTGGTGTGCAGCGACGTGGTAGGCGTAGTCTGGGTG
1 CCAGTGGTGTGCAGCGACGTAGTAGGCGTAGTCTGGGTG
184405 CCAGTGGTGTGCAGCGACGTAGTAGG
1 CCAGTGGTGTGCAGCGACGTAGTAGG
184431 ACCAGTAGAC
Statistics
Matches: 62, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 62 1.00
ACGTcount: A:0.14, C:0.19, G:0.43, T:0.23
Consensus pattern (39 bp):
CCAGTGGTGTGCAGCGACGTAGTAGGCGTAGTCTGGGTG
Left flanking sequence: Indices 183827 -- 184326
CTGGGTGCCAGTGGTGTGCAGCGACGTGGTAGGCGTAGTCTGGGTGCCAGTGGTGTGCAGCGACG
TAGTAGGCGTAGTCTGAGTGCCAGTGGTGTGCAGCGACGTCGTAGGCGTAGTCTGAGTGCCAGTG
GTGTGCAGCGACGTGGTAGGCGTAGTCTGGGTACCAGTGGTGTGCAGCGTAGTAGGACCAGTAGA
CGTAGTCAGAGTCGTAGGACCAGTGGTGGTCAGCGACGTCGTAGGCGTAGTCTCAGATCCGGTGG
TCGTCAGCGATGTGGTTTTAGACGTAGTGCTGGTGTTTGTGGTAGTCAGCTCAGACGTCGTGGGG
GATGTCTCCGATGACGTAGACACGAAAACCNGGGGATGTCTCCGATGACGTAGACACGAAAACCG
TCGGCGTAGTCCACGTGGTGATAGTCACTGTTATACACGACAGGGGCGGAGGTGTGGAGGTGGTG
GAAGACTCTGATGTAGGACCGGTGGACGTAGTCAGAGTCGTAGGA
Right flanking sequence: Indices 184431 -- 184839
ACCAGTAGACGTAGTCAGCGACGTAGGACCAGTGGTAGTCGGCGACGTCGTAGGCGTAGTCTGGG
TACCGGTAGTGTGCAGCGACGTGGTGGGCGTAGTCTGAGTGCCAGTGGTGTGCAGCGACGTGGTA
GGCGTAGTCTGAGTGCCAGTGGTGTGCAGCGACGTGGTAGGCGTAGTCTGGGTACCAGTGGTGTG
CAGCGTAGTAGGACCAGTAGACGTAGTCAGAGTCGTAGGACCAGTGGTGGTCAGCGACGTGGTGG
GCGTAGTCTGAGTGCCAGTAGTGTGCAGCGACGTCGTTGGCGTAGTCTGGGTACCAGTGGTGTGC
AGCGACGTGGTGGGCGTAGTCTGAGTACCAGTGGTGGTCAGCGACGTCGTAGGCGTAGTCTGGGT
ACCAGTGGTGTGCAGCGAC
Found at i:184465 original size:132 final size:132
Alignment explanation
Indices: 184294--184562 Score: 414
Period size: 132 Copynumber: 2.0 Consensus size: 132
184284 AGACTCTGAT
* * * *
184294 GTAGGACCGGTGGACGTAGTCAGAGTCGTAGGACCAGTGGT-GTGCAGCGACGTCGTAGGCGTAT
1 GTAGGACCAGTAGACGTAGTCAGAGACGTAGGACCAGTGGTAGT-CAGCGACGTCGTAGGCGTAG
* * *
184358 TCTGGGTGCCAGTGGTGTGCAGCGACGTGGTAGGCGTAGTCTGGGTGCCAGTGGTGTGCAGCGAC
65 TCTGGGTACCAGTAGTGTGCAGCGACGTGGTAGGCGTAGTCTGAGTGCCAGTGGTGTGCAGCGAC
184423 GTA
130 GTA
* *
184426 GTAGGACCAGTAGACGTAGTCAGCGACGTAGGACCAGTGGTAGTCGGCGACGTCGTAGGCGTAGT
1 GTAGGACCAGTAGACGTAGTCAGAGACGTAGGACCAGTGGTAGTCAGCGACGTCGTAGGCGTAGT
* *
184491 CTGGGTACCGGTAGTGTGCAGCGACGTGGTGGGCGTAGTCTGAGTGCCAGTGGTGTGCAGCGACG
66 CTGGGTACCAGTAGTGTGCAGCGACGTGGTAGGCGTAGTCTGAGTGCCAGTGGTGTGCAGCGACG
*
184556 TG
131 TA
184558 GTAGG
1 GTAGG
184563 CGTAGTCTGA
Statistics
Matches: 124, Mismatches: 12, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
132 122 0.98
133 2 0.02
ACGTcount: A:0.17, C:0.19, G:0.42, T:0.21
Consensus pattern (132 bp):
GTAGGACCAGTAGACGTAGTCAGAGACGTAGGACCAGTGGTAGTCAGCGACGTCGTAGGCGTAGT
CTGGGTACCAGTAGTGTGCAGCGACGTGGTAGGCGTAGTCTGAGTGCCAGTGGTGTGCAGCGACG
TA
Left flanking sequence: Indices 183794 -- 184293
ACCAGTGGTGTGCAGCGACGTCGTAGGCGTATTCTGGGTGCCAGTGGTGTGCAGCGACGTGGTAG
GCGTAGTCTGGGTGCCAGTGGTGTGCAGCGACGTAGTAGGCGTAGTCTGAGTGCCAGTGGTGTGC
AGCGACGTCGTAGGCGTAGTCTGAGTGCCAGTGGTGTGCAGCGACGTGGTAGGCGTAGTCTGGGT
ACCAGTGGTGTGCAGCGTAGTAGGACCAGTAGACGTAGTCAGAGTCGTAGGACCAGTGGTGGTCA
GCGACGTCGTAGGCGTAGTCTCAGATCCGGTGGTCGTCAGCGATGTGGTTTTAGACGTAGTGCTG
GTGTTTGTGGTAGTCAGCTCAGACGTCGTGGGGGATGTCTCCGATGACGTAGACACGAAAACCNG
GGGATGTCTCCGATGACGTAGACACGAAAACCGTCGGCGTAGTCCACGTGGTGATAGTCACTGTT
ATACACGACAGGGGCGGAGGTGTGGAGGTGGTGGAAGACTCTGAT
Right flanking sequence: Indices 184563 -- 184839
CGTAGTCTGAGTGCCAGTGGTGTGCAGCGACGTGGTAGGCGTAGTCTGGGTACCAGTGGTGTGCA
GCGTAGTAGGACCAGTAGACGTAGTCAGAGTCGTAGGACCAGTGGTGGTCAGCGACGTGGTGGGC
GTAGTCTGAGTGCCAGTAGTGTGCAGCGACGTCGTTGGCGTAGTCTGGGTACCAGTGGTGTGCAG
CGACGTGGTGGGCGTAGTCTGAGTACCAGTGGTGGTCAGCGACGTCGTAGGCGTAGTCTGGGTAC
CAGTGGTGTGCAGCGAC
Found at i:184475 original size:24 final size:26
Alignment explanation
Indices: 184426--184478 Score: 74
Period size: 24 Copynumber: 2.1 Consensus size: 26
184416 CAGCGACGTA
184426 GTAGGACCAGTAGACGTAGTCAGCGAC
1 GTAGGACCAGTAGA-GTAGTCAGCGAC
*
184453 GTAGGACCAGT-G-GTAGTCGGCGAC
1 GTAGGACCAGTAGAGTAGTCAGCGAC
184477 GT
1 GT
184479 CGTAGGCGTA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
24 13 0.52
26 1 0.04
27 11 0.44
ACGTcount: A:0.25, C:0.21, G:0.38, T:0.17
Consensus pattern (26 bp):
GTAGGACCAGTAGAGTAGTCAGCGAC
Left flanking sequence: Indices 183926 -- 184425
CGACGTCGTAGGCGTAGTCTGAGTGCCAGTGGTGTGCAGCGACGTGGTAGGCGTAGTCTGGGTAC
CAGTGGTGTGCAGCGTAGTAGGACCAGTAGACGTAGTCAGAGTCGTAGGACCAGTGGTGGTCAGC
GACGTCGTAGGCGTAGTCTCAGATCCGGTGGTCGTCAGCGATGTGGTTTTAGACGTAGTGCTGGT
GTTTGTGGTAGTCAGCTCAGACGTCGTGGGGGATGTCTCCGATGACGTAGACACGAAAACCNGGG
GATGTCTCCGATGACGTAGACACGAAAACCGTCGGCGTAGTCCACGTGGTGATAGTCACTGTTAT
ACACGACAGGGGCGGAGGTGTGGAGGTGGTGGAAGACTCTGATGTAGGACCGGTGGACGTAGTCA
GAGTCGTAGGACCAGTGGTGTGCAGCGACGTCGTAGGCGTATTCTGGGTGCCAGTGGTGTGCAGC
GACGTGGTAGGCGTAGTCTGGGTGCCAGTGGTGTGCAGCGACGTA
Right flanking sequence: Indices 184479 -- 184839
CGTAGGCGTAGTCTGGGTACCGGTAGTGTGCAGCGACGTGGTGGGCGTAGTCTGAGTGCCAGTGG
TGTGCAGCGACGTGGTAGGCGTAGTCTGAGTGCCAGTGGTGTGCAGCGACGTGGTAGGCGTAGTC
TGGGTACCAGTGGTGTGCAGCGTAGTAGGACCAGTAGACGTAGTCAGAGTCGTAGGACCAGTGGT
GGTCAGCGACGTGGTGGGCGTAGTCTGAGTGCCAGTAGTGTGCAGCGACGTCGTTGGCGTAGTCT
GGGTACCAGTGGTGTGCAGCGACGTGGTGGGCGTAGTCTGAGTACCAGTGGTGGTCAGCGACGTC
GTAGGCGTAGTCTGGGTACCAGTGGTGTGCAGCGAC
Found at i:184482 original size:27 final size:27
Alignment explanation
Indices: 184405--184484 Score: 78
Period size: 27 Copynumber: 3.0 Consensus size: 27
184395 AGTCTGGGTG
*
184405 CCAGTGGT-GTGCAGCGACGTAGTAGGA
1 CCAGTGGTAGT-CAGCGACGTCGTAGGA
184432 CCAGTAGACGTAGTCAGCGA---CGTAGGA
1 CCAGT-G--GTAGTCAGCGACGTCGTAGGA
*
184459 CCAGTGGTAGTCGGCGACGTCGTAGG
1 CCAGTGGTAGTCAGCGACGTCGTAGG
184485 CGTAGTCTGG
Statistics
Matches: 44, Mismatches: 2, Indels: 14
0.73 0.03 0.23
Matches are distributed among these distances:
24 10 0.23
26 1 0.02
27 22 0.50
28 1 0.02
30 8 0.18
31 2 0.05
ACGTcount: A:0.23, C:0.21, G:0.39, T:0.17
Consensus pattern (27 bp):
CCAGTGGTAGTCAGCGACGTCGTAGGA
Left flanking sequence: Indices 183905 -- 184404
CTGAGTGCCAGTGGTGTGCAGCGACGTCGTAGGCGTAGTCTGAGTGCCAGTGGTGTGCAGCGACG
TGGTAGGCGTAGTCTGGGTACCAGTGGTGTGCAGCGTAGTAGGACCAGTAGACGTAGTCAGAGTC
GTAGGACCAGTGGTGGTCAGCGACGTCGTAGGCGTAGTCTCAGATCCGGTGGTCGTCAGCGATGT
GGTTTTAGACGTAGTGCTGGTGTTTGTGGTAGTCAGCTCAGACGTCGTGGGGGATGTCTCCGATG
ACGTAGACACGAAAACCNGGGGATGTCTCCGATGACGTAGACACGAAAACCGTCGGCGTAGTCCA
CGTGGTGATAGTCACTGTTATACACGACAGGGGCGGAGGTGTGGAGGTGGTGGAAGACTCTGATG
TAGGACCGGTGGACGTAGTCAGAGTCGTAGGACCAGTGGTGTGCAGCGACGTCGTAGGCGTATTC
TGGGTGCCAGTGGTGTGCAGCGACGTGGTAGGCGTAGTCTGGGTG
Right flanking sequence: Indices 184485 -- 184839
CGTAGTCTGGGTACCGGTAGTGTGCAGCGACGTGGTGGGCGTAGTCTGAGTGCCAGTGGTGTGCA
GCGACGTGGTAGGCGTAGTCTGAGTGCCAGTGGTGTGCAGCGACGTGGTAGGCGTAGTCTGGGTA
CCAGTGGTGTGCAGCGTAGTAGGACCAGTAGACGTAGTCAGAGTCGTAGGACCAGTGGTGGTCAG
CGACGTGGTGGGCGTAGTCTGAGTGCCAGTAGTGTGCAGCGACGTCGTTGGCGTAGTCTGGGTAC
CAGTGGTGTGCAGCGACGTGGTGGGCGTAGTCTGAGTACCAGTGGTGGTCAGCGACGTCGTAGGC
GTAGTCTGGGTACCAGTGGTGTGCAGCGAC
Found at i:184515 original size:39 final size:39
Alignment explanation
Indices: 184458--184839 Score: 412
Period size: 39 Copynumber: 9.5 Consensus size: 39
184448 GCGACGTAGG
* *
184458 ACCAGTGGTAGT-CGGCGACGTCGTAGGCGTAGTCTGGGT
1 ACCAGTGGT-GTGCAGCGACGTGGTAGGCGTAGTCTGGGT
* * * *
184497 ACCGGTAGTGTGCAGCGACGTGGTGGGCGTAGTCTGAGT
1 ACCAGTGGTGTGCAGCGACGTGGTAGGCGTAGTCTGGGT
* *
184536 GCCAGTGGTGTGCAGCGACGTGGTAGGCGTAGTCTGAGT
1 ACCAGTGGTGTGCAGCGACGTGGTAGGCGTAGTCTGGGT
*
184575 GCCAGTGGTGTGCAGCGACGTGGTAGGCGTAGTCTGGGT
1 ACCAGTGGTGTGCAGCGACGTGGTAGGCGTAGTCTGGGT
* *
184614 ACCAGTGGTGTGCAGCGTA-GTAGGACCAGTAGACGTAGTCAGAGTCGT
1 ACCAGTGGTGTGCAGCG-ACGT--G----GTAGGCGTAGTCTG-G--GT
* *
184662 AGGACCAGTGGTG-GTCAGCGACGTGGTGGGCGTAGTCTGAGT
1 ---ACCAGTGGTGTG-CAGCGACGTGGTAGGCGTAGTCTGGGT
* * * *
184704 GCCAGTAGTGTGCAGCGACGTCGTTGGCGTAGTCTGGGT
1 ACCAGTGGTGTGCAGCGACGTGGTAGGCGTAGTCTGGGT
* *
184743 ACCAGTGGTGTGCAGCGACGTGGTGGGCGTAGTCTGAGT
1 ACCAGTGGTGTGCAGCGACGTGGTAGGCGTAGTCTGGGT
*
184782 ACCAGTGGTG-GTCAGCGACGTCGTAGGCGTAGTCTGGGT
1 ACCAGTGGTGTG-CAGCGACGTGGTAGGCGTAGTCTGGGT
184821 ACCAGTGGTGTGCAGCGAC
1 ACCAGTGGTGTGCAGCGAC
Statistics
Matches: 293, Mismatches: 31, Indels: 38
0.81 0.09 0.10
Matches are distributed among these distances:
38 3 0.01
39 238 0.81
40 3 0.01
41 1 0.00
42 2 0.01
45 23 0.08
46 1 0.00
48 2 0.01
49 1 0.00
50 2 0.01
51 17 0.06
ACGTcount: A:0.16, C:0.19, G:0.42, T:0.23
Consensus pattern (39 bp):
ACCAGTGGTGTGCAGCGACGTGGTAGGCGTAGTCTGGGT
Left flanking sequence: Indices 183958 -- 184457
TGTGCAGCGACGTGGTAGGCGTAGTCTGGGTACCAGTGGTGTGCAGCGTAGTAGGACCAGTAGAC
GTAGTCAGAGTCGTAGGACCAGTGGTGGTCAGCGACGTCGTAGGCGTAGTCTCAGATCCGGTGGT
CGTCAGCGATGTGGTTTTAGACGTAGTGCTGGTGTTTGTGGTAGTCAGCTCAGACGTCGTGGGGG
ATGTCTCCGATGACGTAGACACGAAAACCNGGGGATGTCTCCGATGACGTAGACACGAAAACCGT
CGGCGTAGTCCACGTGGTGATAGTCACTGTTATACACGACAGGGGCGGAGGTGTGGAGGTGGTGG
AAGACTCTGATGTAGGACCGGTGGACGTAGTCAGAGTCGTAGGACCAGTGGTGTGCAGCGACGTC
GTAGGCGTATTCTGGGTGCCAGTGGTGTGCAGCGACGTGGTAGGCGTAGTCTGGGTGCCAGTGGT
GTGCAGCGACGTAGTAGGACCAGTAGACGTAGTCAGCGACGTAGG
Right flanking sequence: None
Found at i:184541 original size:78 final size:78
Alignment explanation
Indices: 184458--184839 Score: 466
Period size: 78 Copynumber: 4.7 Consensus size: 78
184448 GCGACGTAGG
* * *
184458 ACCAGTGGTAGT-CGGCGACGTCGTAGGCGTAGTCTGGGTACCGGTAGTGTGCAGCGACGTGGTG
1 ACCAGTGGT-GTGCAGCGACGTCGTAGGCGTAGTCTGGGTACCAGTGGTGTGCAGCGACGTGGTG
184522 GGCGTAGTCTGAGT
65 GGCGTAGTCTGAGT
* * * * *
184536 GCCAGTGGTGTGCAGCGACGTGGTAGGCGTAGTCTGAGTGCCAGTGGTGTGCAGCGACGTGGTAG
1 ACCAGTGGTGTGCAGCGACGTCGTAGGCGTAGTCTGGGTACCAGTGGTGTGCAGCGACGTGGTGG
*
184601 GCGTAGTCTGGGT
66 GCGTAGTCTGAGT
* *
184614 ACCAGTGGTGTGCAGCGTA-GTAGGACCAGTAGACGTAGTCAGAGTCGTAGGACCAGTGGTG-GT
1 ACCAGTGGTGTGCAGCG-ACGT-----C-GTAGGCGTAGTCTG-G--GT---ACCAGTGGTGTG-
184677 CAGCGACGTGGTGGGCGTAGTCTGAGT
52 CAGCGACGTGGTGGGCGTAGTCTGAGT
* * *
184704 GCCAGTAGTGTGCAGCGACGTCGTTGGCGTAGTCTGGGTACCAGTGGTGTGCAGCGACGTGGTGG
1 ACCAGTGGTGTGCAGCGACGTCGTAGGCGTAGTCTGGGTACCAGTGGTGTGCAGCGACGTGGTGG
184769 GCGTAGTCTGAGT
66 GCGTAGTCTGAGT
184782 ACCAGTGGTG-GTCAGCGACGTCGTAGGCGTAGTCTGGGTACCAGTGGTGTGCAGCGAC
1 ACCAGTGGTGTG-CAGCGACGTCGTAGGCGTAGTCTGGGTACCAGTGGTGTGCAGCGAC
Statistics
Matches: 261, Mismatches: 25, Indels: 36
0.81 0.08 0.11
Matches are distributed among these distances:
77 3 0.01
78 174 0.67
79 2 0.01
81 2 0.01
83 1 0.00
84 23 0.09
85 1 0.00
87 2 0.01
89 2 0.01
90 51 0.20
ACGTcount: A:0.16, C:0.19, G:0.42, T:0.23
Consensus pattern (78 bp):
ACCAGTGGTGTGCAGCGACGTCGTAGGCGTAGTCTGGGTACCAGTGGTGTGCAGCGACGTGGTGG
GCGTAGTCTGAGT
Left flanking sequence: Indices 183958 -- 184457
TGTGCAGCGACGTGGTAGGCGTAGTCTGGGTACCAGTGGTGTGCAGCGTAGTAGGACCAGTAGAC
GTAGTCAGAGTCGTAGGACCAGTGGTGGTCAGCGACGTCGTAGGCGTAGTCTCAGATCCGGTGGT
CGTCAGCGATGTGGTTTTAGACGTAGTGCTGGTGTTTGTGGTAGTCAGCTCAGACGTCGTGGGGG
ATGTCTCCGATGACGTAGACACGAAAACCNGGGGATGTCTCCGATGACGTAGACACGAAAACCGT
CGGCGTAGTCCACGTGGTGATAGTCACTGTTATACACGACAGGGGCGGAGGTGTGGAGGTGGTGG
AAGACTCTGATGTAGGACCGGTGGACGTAGTCAGAGTCGTAGGACCAGTGGTGTGCAGCGACGTC
GTAGGCGTATTCTGGGTGCCAGTGGTGTGCAGCGACGTGGTAGGCGTAGTCTGGGTGCCAGTGGT
GTGCAGCGACGTAGTAGGACCAGTAGACGTAGTCAGCGACGTAGG
Right flanking sequence: None
Found at i:184688 original size:129 final size:117
Alignment explanation
Indices: 184459--184839 Score: 455
Period size: 117 Copynumber: 3.2 Consensus size: 117
184449 CGACGTAGGA
* * * *
184459 CCAGTGGTAGT-CGGCGACGTCGTAGGCGTAGTCTGGGTACCGGTAGTGTGCAGCGACGTGGTGG
1 CCAGTGGT-GTGCAGCGACGTCGTAGGCGTAGTCTGGGTACCAGTGGTGTGCAGCGACGTGGTAG
*
184523 GCGTAGTCTGAGTG-CCAGTGGT-GTGCAGCGACGTGGTAGGCGTAGTCTGAGTG
65 ACGTAGTCTGAG-GACCAGTGGTGGT-CAGCGACGTGGTAGGCGTAGTCTGAGTG
*
184576 CCAGTGGTGTGCAGCGACGTGGTAGGCGTAGTCTGGGTACCAGTGGTGTGCAGCGTA-GTAGGAC
1 CCAGTGGTGTGCAGCGACGTCGTAGGCGTAGTCTGGGTACCAGTGGTGTGCAGCG-ACGT--G--
*
184640 CAGTAGACGTAGTCAGAGTCGTAGGACCAGTGGTGGTCAGCGACGTGGTGGGCGTAGTCTGAGTG
61 --GTAGACGTAGTC----T-G-AGGACCAGTGGTGGTCAGCGACGTGGTAGGCGTAGTCTGAGTG
* * * *
184705 CCAGTAGTGTGCAGCGACGTCGTTGGCGTAGTCTGGGTACCAGTGGTGTGCAGCGACGTGGTGGG
1 CCAGTGGTGTGCAGCGACGTCGTAGGCGTAGTCTGGGTACCAGTGGTGTGCAGCGACGTGGTAGA
* * * *
184770 CGTAGTCTGAGTACCAGTGGTGGTCAGCGACGTCGTAGGCGTAGTCTGGGTA
66 CGTAGTCTGAGGACCAGTGGTGGTCAGCGACGTGGTAGGCGTAGTCTGAGTG
184822 CCAGTGGTGTGCAGCGAC
1 CCAGTGGTGTGCAGCGAC
Statistics
Matches: 229, Mismatches: 18, Indels: 34
0.81 0.06 0.12
Matches are distributed among these distances:
116 2 0.01
117 105 0.46
118 2 0.01
119 2 0.01
123 20 0.09
127 2 0.01
128 3 0.01
129 91 0.40
130 2 0.01
ACGTcount: A:0.16, C:0.19, G:0.42, T:0.23
Consensus pattern (117 bp):
CCAGTGGTGTGCAGCGACGTCGTAGGCGTAGTCTGGGTACCAGTGGTGTGCAGCGACGTGGTAGA
CGTAGTCTGAGGACCAGTGGTGGTCAGCGACGTGGTAGGCGTAGTCTGAGTG
Left flanking sequence: Indices 183959 -- 184458
GTGCAGCGACGTGGTAGGCGTAGTCTGGGTACCAGTGGTGTGCAGCGTAGTAGGACCAGTAGACG
TAGTCAGAGTCGTAGGACCAGTGGTGGTCAGCGACGTCGTAGGCGTAGTCTCAGATCCGGTGGTC
GTCAGCGATGTGGTTTTAGACGTAGTGCTGGTGTTTGTGGTAGTCAGCTCAGACGTCGTGGGGGA
TGTCTCCGATGACGTAGACACGAAAACCNGGGGATGTCTCCGATGACGTAGACACGAAAACCGTC
GGCGTAGTCCACGTGGTGATAGTCACTGTTATACACGACAGGGGCGGAGGTGTGGAGGTGGTGGA
AGACTCTGATGTAGGACCGGTGGACGTAGTCAGAGTCGTAGGACCAGTGGTGTGCAGCGACGTCG
TAGGCGTATTCTGGGTGCCAGTGGTGTGCAGCGACGTGGTAGGCGTAGTCTGGGTGCCAGTGGTG
TGCAGCGACGTAGTAGGACCAGTAGACGTAGTCAGCGACGTAGGA
Right flanking sequence: None
Found at i:184737 original size:207 final size:207
Alignment explanation
Indices: 184326--184837 Score: 801
Period size: 207 Copynumber: 2.5 Consensus size: 207
184316 GAGTCGTAGG
* * *
184326 ACCAGTGGTGTGCAGCGACGTCGTAGGCGTATTCTGGGTGCCAGTGGTGTGCAGCGACGTGGTAG
1 ACCAGTGGTGTGCAGCGACGTGGTAGGCGTAGTCTGAGTGCCAGTGGTGTGCAGCGACGTGGTAG
* *
184391 GCGTAGTCTGGGTGCCAGTGGTGTGCAGCGACGTAGTAGGACCAGTAGACGTAGTCAGCGACGTA
66 GCGTAGTCTGGGTACCAGTGGTGTGCA--G-CGTAGTAGGACCAGTAGACGTAGTCAGAGACGTA
* * * *
184456 GGACCAGTGGTAGTCGGCGACGTCGTAGGCGTAGTCTGGGTACCGGTAGTGTGCAGCGACGTGGT
128 GGACCAGTGGTAGTCAGCGACGTCGTAGGCGTAGTCTGAGTACCAGTAGTGTGCAGCGACGTCGT
184521 GGGCGTAGTCTGAGT
193 GGGCGTAGTCTGAGT
*
184536 GCCAGTGGTGTGCAGCGACGTGGTAGGCGTAGTCTGAGTGCCAGTGGTGTGCAGCGACGTGGTAG
1 ACCAGTGGTGTGCAGCGACGTGGTAGGCGTAGTCTGAGTGCCAGTGGTGTGCAGCGACGTGGTAG
*
184601 GCGTAGTCTGGGTACCAGTGGTGTGCAGCGTAGTAGGACCAGTAGACGTAGTCAGAGTCGTAGGA
66 GCGTAGTCTGGGTACCAGTGGTGTGCAGCGTAGTAGGACCAGTAGACGTAGTCAGAGACGTAGGA
* * * * *
184666 CCAGTGGTGGTCAGCGACGTGGTGGGCGTAGTCTGAGTGCCAGTAGTGTGCAGCGACGTCGTTGG
131 CCAGTGGTAGTCAGCGACGTCGTAGGCGTAGTCTGAGTACCAGTAGTGTGCAGCGACGTCGTGGG
*
184731 CGTAGTCTGGGT
196 CGTAGTCTGAGT
* * *
184743 ACCAGTGGTGTGCAGCGACGTGGTGGGCGTAGTCTGAGTACCAGTGGTG-GTCAGCGACGTCGTA
1 ACCAGTGGTGTGCAGCGACGTGGTAGGCGTAGTCTGAGTGCCAGTGGTGTG-CAGCGACGTGGTA
184807 GGCGTAGTCTGGGTACCAGTGGTGTGCAGCG
65 GGCGTAGTCTGGGTACCAGTGGTGTGCAGCG
184838 AC
Statistics
Matches: 280, Mismatches: 21, Indels: 5
0.92 0.07 0.02
Matches are distributed among these distances:
206 1 0.00
207 191 0.68
208 1 0.00
210 87 0.31
ACGTcount: A:0.17, C:0.19, G:0.42, T:0.22
Consensus pattern (207 bp):
ACCAGTGGTGTGCAGCGACGTGGTAGGCGTAGTCTGAGTGCCAGTGGTGTGCAGCGACGTGGTAG
GCGTAGTCTGGGTACCAGTGGTGTGCAGCGTAGTAGGACCAGTAGACGTAGTCAGAGACGTAGGA
CCAGTGGTAGTCAGCGACGTCGTAGGCGTAGTCTGAGTACCAGTAGTGTGCAGCGACGTCGTGGG
CGTAGTCTGAGT
Left flanking sequence: Indices 183826 -- 184325
TCTGGGTGCCAGTGGTGTGCAGCGACGTGGTAGGCGTAGTCTGGGTGCCAGTGGTGTGCAGCGAC
GTAGTAGGCGTAGTCTGAGTGCCAGTGGTGTGCAGCGACGTCGTAGGCGTAGTCTGAGTGCCAGT
GGTGTGCAGCGACGTGGTAGGCGTAGTCTGGGTACCAGTGGTGTGCAGCGTAGTAGGACCAGTAG
ACGTAGTCAGAGTCGTAGGACCAGTGGTGGTCAGCGACGTCGTAGGCGTAGTCTCAGATCCGGTG
GTCGTCAGCGATGTGGTTTTAGACGTAGTGCTGGTGTTTGTGGTAGTCAGCTCAGACGTCGTGGG
GGATGTCTCCGATGACGTAGACACGAAAACCNGGGGATGTCTCCGATGACGTAGACACGAAAACC
GTCGGCGTAGTCCACGTGGTGATAGTCACTGTTATACACGACAGGGGCGGAGGTGTGGAGGTGGT
GGAAGACTCTGATGTAGGACCGGTGGACGTAGTCAGAGTCGTAGG
Right flanking sequence: Indices 184838 -- 184839
AC
Done.