Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: scaffold52
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 218772
ACGTcount: A:0.23, C:0.27, G:0.27, T:0.23
File 1 of 2
Found at i:26 original size:15 final size:15
Alignment explanation
Indices: 2--31 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
1 A
*
2 GCCCGTGGGAGGAGG
1 GCCCGAGGGAGGAGG
17 GCCCGAGGGAGGAGG
1 GCCCGAGGGAGGAGG
32 AGGAGGGCCC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.17, C:0.20, G:0.60, T:0.03
Consensus pattern (15 bp):
GCCCGAGGGAGGAGG
Left flanking sequence: Indices 1 -- 1
A
Right flanking sequence: Indices 32 -- 531
AGGAGGGCCCGGGGGAGGAGGCGGCGCCGGCGCGCGCGGGAGGGAAGGTGTAGGTGCCGTGGGCG
GCGGCGCCAAACGAGGTGGCGAGCGCGGTGGGCGGGGGGTCGAACAGCGCCGGGGGCGCGGCGGG
GCGGTCGAGCGCCTGGGCAAACGACCCCACCGACGGGGTCGCCAAGTCGGGGTACGACCCCGCGG
GGGTGGCGCCGGCGCCGGCAGCGCCGCGCTTGTACACGTCGCCCAGCGCCGTCACCCGCAACCCG
GGGGAGGGCGCGGGGCGGTCGTGGGGCAGCAGCGGCGGCGGGTCCAGCGCCGCGCGCACCGGGGG
CGGGGGCGTCGGGCGCAGCAAGTTGAGCAGCAAGTTCTTCATGTTCCTCGACGAGGTCAACAGCA
ACGGGCGCTTCAGGTGCTTGGGCAGGTAGTTGACGAGCCCGGGCGGCAGCAACAGCAGCGCCAGG
CCCGCCAGCAGCACCAGCAGCGCCAGCAGCACCAGCGAGATCAGC
Found at i:35 original size:21 final size:21
Alignment explanation
Indices: 9--52 Score: 79
Period size: 21 Copynumber: 2.1 Consensus size: 21
1 AGCCCGTG
9 GGAGGAGGGCCCGAGGGAGGA
1 GGAGGAGGGCCCGAGGGAGGA
*
30 GGAGGAGGGCCCGGGGGAGGA
1 GGAGGAGGGCCCGAGGGAGGA
51 GG
1 GG
53 CGGCGCCGGC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.20, C:0.14, G:0.66, T:0.00
Consensus pattern (21 bp):
GGAGGAGGGCCCGAGGGAGGA
Left flanking sequence: Indices 1 -- 8
AGCCCGTG
Right flanking sequence: Indices 53 -- 552
CGGCGCCGGCGCGCGCGGGAGGGAAGGTGTAGGTGCCGTGGGCGGCGGCGCCAAACGAGGTGGCG
AGCGCGGTGGGCGGGGGGTCGAACAGCGCCGGGGGCGCGGCGGGGCGGTCGAGCGCCTGGGCAAA
CGACCCCACCGACGGGGTCGCCAAGTCGGGGTACGACCCCGCGGGGGTGGCGCCGGCGCCGGCAG
CGCCGCGCTTGTACACGTCGCCCAGCGCCGTCACCCGCAACCCGGGGGAGGGCGCGGGGCGGTCG
TGGGGCAGCAGCGGCGGCGGGTCCAGCGCCGCGCGCACCGGGGGCGGGGGCGTCGGGCGCAGCAA
GTTGAGCAGCAAGTTCTTCATGTTCCTCGACGAGGTCAACAGCAACGGGCGCTTCAGGTGCTTGG
GCAGGTAGTTGACGAGCCCGGGCGGCAGCAACAGCAGCGCCAGGCCCGCCAGCAGCACCAGCAGC
GCCAGCAGCACCAGCGAGATCAGCACCTTGTCGGCCAGGGCCCGG
Found at i:497 original size:18 final size:19
Alignment explanation
Indices: 474--521 Score: 64
Period size: 18 Copynumber: 2.6 Consensus size: 19
464 GCGGCAGCAA
*
474 CAGCAGCGCCAGGC-CCGC
1 CAGCAGCACCAGGCACCGC
*
492 CAGCAGCACCA-GCAGCGC
1 CAGCAGCACCAGGCACCGC
510 CAGCAGCACCAG
1 CAGCAGCACCAG
522 CGAGATCAGC
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
17 2 0.08
18 24 0.92
ACGTcount: A:0.25, C:0.46, G:0.29, T:0.00
Consensus pattern (19 bp):
CAGCAGCACCAGGCACCGC
Left flanking sequence: Indices 1 -- 473
AGCCCGTGGGAGGAGGGCCCGAGGGAGGAGGAGGAGGGCCCGGGGGAGGAGGCGGCGCCGGCGCG
CGCGGGAGGGAAGGTGTAGGTGCCGTGGGCGGCGGCGCCAAACGAGGTGGCGAGCGCGGTGGGCG
GGGGGTCGAACAGCGCCGGGGGCGCGGCGGGGCGGTCGAGCGCCTGGGCAAACGACCCCACCGAC
GGGGTCGCCAAGTCGGGGTACGACCCCGCGGGGGTGGCGCCGGCGCCGGCAGCGCCGCGCTTGTA
CACGTCGCCCAGCGCCGTCACCCGCAACCCGGGGGAGGGCGCGGGGCGGTCGTGGGGCAGCAGCG
GCGGCGGGTCCAGCGCCGCGCGCACCGGGGGCGGGGGCGTCGGGCGCAGCAAGTTGAGCAGCAAG
TTCTTCATGTTCCTCGACGAGGTCAACAGCAACGGGCGCTTCAGGTGCTTGGGCAGGTAGTTGAC
GAGCCCGGGCGGCAGCAA
Right flanking sequence: Indices 522 -- 1021
CGAGATCAGCACCTTGTCGGCCAGGGCCCGGGGCAGCAGCATCACCTTCGGGGGCGGGCGCAACT
GGGGCACCGGGGCGTCGTCGCCGCCGCCGCCGCTGGCGACGAAGGGATTGGACATCCGGGAGGGG
GAGGGCGGCTGGGCGGTGTGGAGGAGTATGGTGGTGGGGAGGAACGGGGGAGGGTGGGGCGAGAA
AGAGGAGCGCGGGGGCGAGCGCGGGGCCTAGGACGGTGGGCTAGGACGGCGCGGACGCGGGGGTG
GGCGCTAGACGCGGGGATGGGCGCTAGAACGGGCGCTAGAACGGGCGCTAGAACACTAGGATGGC
GCTAGAACGCGAGGCTGGGCGCGGGTTGGCACCGGTAGGCACTTGGGCGTGGGGGTCTGGGGCGC
CAGAGGGAAGCGCGGAGGAGGGTCGGGCAGCTACGCGGGAGCAGGGGGGTGTAGCGGGCGCGGGA
GCAGGGTTCGCGCGGGGGACAGGGGTGGCGCCGGGGCTAAGGGAG
Found at i:503 original size:9 final size:9
Alignment explanation
Indices: 491--522 Score: 55
Period size: 9 Copynumber: 3.6 Consensus size: 9
481 GCCAGGCCCG
491 CCAGCAGCA
1 CCAGCAGCA
*
500 CCAGCAGCG
1 CCAGCAGCA
509 CCAGCAGCA
1 CCAGCAGCA
518 CCAGC
1 CCAGC
523 GAGATCAGCA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.28, C:0.47, G:0.25, T:0.00
Consensus pattern (9 bp):
CCAGCAGCA
Left flanking sequence: Indices 1 -- 490
AGCCCGTGGGAGGAGGGCCCGAGGGAGGAGGAGGAGGGCCCGGGGGAGGAGGCGGCGCCGGCGCG
CGCGGGAGGGAAGGTGTAGGTGCCGTGGGCGGCGGCGCCAAACGAGGTGGCGAGCGCGGTGGGCG
GGGGGTCGAACAGCGCCGGGGGCGCGGCGGGGCGGTCGAGCGCCTGGGCAAACGACCCCACCGAC
GGGGTCGCCAAGTCGGGGTACGACCCCGCGGGGGTGGCGCCGGCGCCGGCAGCGCCGCGCTTGTA
CACGTCGCCCAGCGCCGTCACCCGCAACCCGGGGGAGGGCGCGGGGCGGTCGTGGGGCAGCAGCG
GCGGCGGGTCCAGCGCCGCGCGCACCGGGGGCGGGGGCGTCGGGCGCAGCAAGTTGAGCAGCAAG
TTCTTCATGTTCCTCGACGAGGTCAACAGCAACGGGCGCTTCAGGTGCTTGGGCAGGTAGTTGAC
GAGCCCGGGCGGCAGCAACAGCAGCGCCAGGCCCG
Right flanking sequence: Indices 523 -- 1022
GAGATCAGCACCTTGTCGGCCAGGGCCCGGGGCAGCAGCATCACCTTCGGGGGCGGGCGCAACTG
GGGCACCGGGGCGTCGTCGCCGCCGCCGCCGCTGGCGACGAAGGGATTGGACATCCGGGAGGGGG
AGGGCGGCTGGGCGGTGTGGAGGAGTATGGTGGTGGGGAGGAACGGGGGAGGGTGGGGCGAGAAA
GAGGAGCGCGGGGGCGAGCGCGGGGCCTAGGACGGTGGGCTAGGACGGCGCGGACGCGGGGGTGG
GCGCTAGACGCGGGGATGGGCGCTAGAACGGGCGCTAGAACGGGCGCTAGAACACTAGGATGGCG
CTAGAACGCGAGGCTGGGCGCGGGTTGGCACCGGTAGGCACTTGGGCGTGGGGGTCTGGGGCGCC
AGAGGGAAGCGCGGAGGAGGGTCGGGCAGCTACGCGGGAGCAGGGGGGTGTAGCGGGCGCGGGAG
CAGGGTTCGCGCGGGGGACAGGGGTGGCGCCGGGGCTAAGGGAGG
Found at i:794 original size:19 final size:19
Alignment explanation
Indices: 770--809 Score: 71
Period size: 19 Copynumber: 2.1 Consensus size: 19
760 GGACGGCGCG
*
770 GACGCGGGGGTGGGCGCTA
1 GACGCGGGGATGGGCGCTA
789 GACGCGGGGATGGGCGCTA
1 GACGCGGGGATGGGCGCTA
808 GA
1 GA
810 ACGGGCGCTA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.15, C:0.20, G:0.55, T:0.10
Consensus pattern (19 bp):
GACGCGGGGATGGGCGCTA
Left flanking sequence: Indices 270 -- 769
CAGCGCCGTCACCCGCAACCCGGGGGAGGGCGCGGGGCGGTCGTGGGGCAGCAGCGGCGGCGGGT
CCAGCGCCGCGCGCACCGGGGGCGGGGGCGTCGGGCGCAGCAAGTTGAGCAGCAAGTTCTTCATG
TTCCTCGACGAGGTCAACAGCAACGGGCGCTTCAGGTGCTTGGGCAGGTAGTTGACGAGCCCGGG
CGGCAGCAACAGCAGCGCCAGGCCCGCCAGCAGCACCAGCAGCGCCAGCAGCACCAGCGAGATCA
GCACCTTGTCGGCCAGGGCCCGGGGCAGCAGCATCACCTTCGGGGGCGGGCGCAACTGGGGCACC
GGGGCGTCGTCGCCGCCGCCGCCGCTGGCGACGAAGGGATTGGACATCCGGGAGGGGGAGGGCGG
CTGGGCGGTGTGGAGGAGTATGGTGGTGGGGAGGAACGGGGGAGGGTGGGGCGAGAAAGAGGAGC
GCGGGGGCGAGCGCGGGGCCTAGGACGGTGGGCTAGGACGGCGCG
Right flanking sequence: Indices 810 -- 1309
ACGGGCGCTAGAACGGGCGCTAGAACACTAGGATGGCGCTAGAACGCGAGGCTGGGCGCGGGTTG
GCACCGGTAGGCACTTGGGCGTGGGGGTCTGGGGCGCCAGAGGGAAGCGCGGAGGAGGGTCGGGC
AGCTACGCGGGAGCAGGGGGGTGTAGCGGGCGCGGGAGCAGGGTTCGCGCGGGGGACAGGGGTGG
CGCCGGGGCTAAGGGAGGAACGGTGTGTGGGCGAGGTGGTGCCAACTGCTGCGAAGTGCGTGCGA
GCGAGGTGCGAGCTCGGTGCGGGACCTTGCGATTTGTGTAGGATCAGAAAAACTAAAAAATAAAC
GCACAAACGCGAGCACGACGTGGTGGGGGGGCCAGCGGGGCGGTGGCGGGCCCGCGGCGGCGCGG
GGCAGTGCCACCCGCTCGGGCCGTGCCCGCACAGGTGCCTCGTGGCGGCGGCCGCGGCGCTGGCC
CCGTGCCGCCCCGCTGGTCGGCCCATCAGCCCACCGTGACTTGTT
Found at i:814 original size:18 final size:19
Alignment explanation
Indices: 774--814 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
764 GGCGCGGACG
* *
774 CGGGGGTGGGCGCTAGACG
1 CGGGGATGGGCGCTAGACA
793 CGGGGATGGGCGCTAGA-A
1 CGGGGATGGGCGCTAGACA
811 CGGG
1 CGGG
815 CGCTAGAACG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 4 0.20
19 16 0.80
ACGTcount: A:0.15, C:0.20, G:0.56, T:0.10
Consensus pattern (19 bp):
CGGGGATGGGCGCTAGACA
Left flanking sequence: Indices 274 -- 773
GCCGTCACCCGCAACCCGGGGGAGGGCGCGGGGCGGTCGTGGGGCAGCAGCGGCGGCGGGTCCAG
CGCCGCGCGCACCGGGGGCGGGGGCGTCGGGCGCAGCAAGTTGAGCAGCAAGTTCTTCATGTTCC
TCGACGAGGTCAACAGCAACGGGCGCTTCAGGTGCTTGGGCAGGTAGTTGACGAGCCCGGGCGGC
AGCAACAGCAGCGCCAGGCCCGCCAGCAGCACCAGCAGCGCCAGCAGCACCAGCGAGATCAGCAC
CTTGTCGGCCAGGGCCCGGGGCAGCAGCATCACCTTCGGGGGCGGGCGCAACTGGGGCACCGGGG
CGTCGTCGCCGCCGCCGCCGCTGGCGACGAAGGGATTGGACATCCGGGAGGGGGAGGGCGGCTGG
GCGGTGTGGAGGAGTATGGTGGTGGGGAGGAACGGGGGAGGGTGGGGCGAGAAAGAGGAGCGCGG
GGGCGAGCGCGGGGCCTAGGACGGTGGGCTAGGACGGCGCGGACG
Right flanking sequence: Indices 815 -- 1314
CGCTAGAACGGGCGCTAGAACACTAGGATGGCGCTAGAACGCGAGGCTGGGCGCGGGTTGGCACC
GGTAGGCACTTGGGCGTGGGGGTCTGGGGCGCCAGAGGGAAGCGCGGAGGAGGGTCGGGCAGCTA
CGCGGGAGCAGGGGGGTGTAGCGGGCGCGGGAGCAGGGTTCGCGCGGGGGACAGGGGTGGCGCCG
GGGCTAAGGGAGGAACGGTGTGTGGGCGAGGTGGTGCCAACTGCTGCGAAGTGCGTGCGAGCGAG
GTGCGAGCTCGGTGCGGGACCTTGCGATTTGTGTAGGATCAGAAAAACTAAAAAATAAACGCACA
AACGCGAGCACGACGTGGTGGGGGGGCCAGCGGGGCGGTGGCGGGCCCGCGGCGGCGCGGGGCAG
TGCCACCCGCTCGGGCCGTGCCCGCACAGGTGCCTCGTGGCGGCGGCCGCGGCGCTGGCCCCGTG
CCGCCCCGCTGGTCGGCCCATCAGCCCACCGTGACTTGTTTCAAC
Found at i:817 original size:12 final size:12
Alignment explanation
Indices: 800--835 Score: 72
Period size: 12 Copynumber: 3.0 Consensus size: 12
790 ACGCGGGGAT
800 GGGCGCTAGAAC
1 GGGCGCTAGAAC
812 GGGCGCTAGAAC
1 GGGCGCTAGAAC
824 GGGCGCTAGAAC
1 GGGCGCTAGAAC
836 ACTAGGATGG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 24 1.00
ACGTcount: A:0.25, C:0.25, G:0.42, T:0.08
Consensus pattern (12 bp):
GGGCGCTAGAAC
Left flanking sequence: Indices 300 -- 799
CGCGGGGCGGTCGTGGGGCAGCAGCGGCGGCGGGTCCAGCGCCGCGCGCACCGGGGGCGGGGGCG
TCGGGCGCAGCAAGTTGAGCAGCAAGTTCTTCATGTTCCTCGACGAGGTCAACAGCAACGGGCGC
TTCAGGTGCTTGGGCAGGTAGTTGACGAGCCCGGGCGGCAGCAACAGCAGCGCCAGGCCCGCCAG
CAGCACCAGCAGCGCCAGCAGCACCAGCGAGATCAGCACCTTGTCGGCCAGGGCCCGGGGCAGCA
GCATCACCTTCGGGGGCGGGCGCAACTGGGGCACCGGGGCGTCGTCGCCGCCGCCGCCGCTGGCG
ACGAAGGGATTGGACATCCGGGAGGGGGAGGGCGGCTGGGCGGTGTGGAGGAGTATGGTGGTGGG
GAGGAACGGGGGAGGGTGGGGCGAGAAAGAGGAGCGCGGGGGCGAGCGCGGGGCCTAGGACGGTG
GGCTAGGACGGCGCGGACGCGGGGGTGGGCGCTAGACGCGGGGAT
Right flanking sequence: Indices 836 -- 1335
ACTAGGATGGCGCTAGAACGCGAGGCTGGGCGCGGGTTGGCACCGGTAGGCACTTGGGCGTGGGG
GTCTGGGGCGCCAGAGGGAAGCGCGGAGGAGGGTCGGGCAGCTACGCGGGAGCAGGGGGGTGTAG
CGGGCGCGGGAGCAGGGTTCGCGCGGGGGACAGGGGTGGCGCCGGGGCTAAGGGAGGAACGGTGT
GTGGGCGAGGTGGTGCCAACTGCTGCGAAGTGCGTGCGAGCGAGGTGCGAGCTCGGTGCGGGACC
TTGCGATTTGTGTAGGATCAGAAAAACTAAAAAATAAACGCACAAACGCGAGCACGACGTGGTGG
GGGGGCCAGCGGGGCGGTGGCGGGCCCGCGGCGGCGCGGGGCAGTGCCACCCGCTCGGGCCGTGC
CCGCACAGGTGCCTCGTGGCGGCGGCCGCGGCGCTGGCCCCGTGCCGCCCCGCTGGTCGGCCCAT
CAGCCCACCGTGACTTGTTTCAACGGCATATGTGTCCTGCACACG
Found at i:2130 original size:21 final size:23
Alignment explanation
Indices: 2089--2142 Score: 78
Period size: 21 Copynumber: 2.5 Consensus size: 23
2079 ACGCTGTCTA
2089 TGCTGTCT-TTACCCTTTTTCTC
1 TGCTGTCTCTTACCCTTTTTCTC
2111 TGCTGTCTCTT-CCC-TTTTCTC
1 TGCTGTCTCTTACCCTTTTTCTC
*
2132 CGCTGTCTCTT
1 TGCTGTCTCTT
2143 TTCTCCGCTG
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
21 17 0.57
22 11 0.37
23 2 0.07
ACGTcount: A:0.02, C:0.35, G:0.11, T:0.52
Consensus pattern (23 bp):
TGCTGTCTCTTACCCTTTTTCTC
Left flanking sequence: Indices 1589 -- 2088
AGCCTGCATCCACCGTCGCCAACGCAGCGGGCCTGAGAGTAGTGAGGGGCCGGTTCCGGCGCACG
GGGCGCGCTGCGGGGCGTCGGGCGCGGTGTCAGGTGGCTAGTGCCGGCTTCGCTGTCTCGTGGGT
GTTCGCTGTCACTGCCTGGGCCCTCCCGGCCGGGGTCCCAGGGTCTGATTGGTTGCAACCGGTGT
CGTGATTCGTCCTGCAGACAGCCCGCCTCATAATATCGATCAAGGCGGGTACCCCTAGGAAAATA
AGGTTGCAAACGCCTACTACCGTCGCTGGCGAGCGGGCCCGCAGCGACGCGTCAGACGGGGGCTG
CCACGACGAGGGTGGCTAGGTTTTGTTTTTTGGTGGCTGTTGGGAGTGAAGTCTCGGGTGCTACC
TGCACACCCCTTCCGTTGACATGCTGACGTCGTAATAAAGTTTATCGCCTTTGCGCTGGCCCTAC
TACGTGACTAGTGTACAGTTTTCTTTACGCTGTCTACGCTGTCTA
Right flanking sequence: Indices 2143 -- 2642
TTCTCCGCTGTCTCTTTTCTCCGCTCTCTACCTCTTCTGTCTGAGCCCATATTAACCGTGCCGGG
CTTGCAGCCAACGGCGCATCACGCCACCCCGTCAGGTTTGGGTTGGTGCTCGCGATGGTTGGCGG
GACAACCGCCGGTTGCACGGTGGAGCCAGCGACGGGGGGGTGGCCACCGGTTGCAAGCAACCGTG
GGCTGCCAGGGGTGTCTCGGGCCCGTCGCGTGGACGTGTCGACGTGCATATTTTTTGCCCGATCG
GGAAGGAAGACCGAGCTTCGCGCCCAAAACGGCAATGGCCCACCCACAACGGTCGGGCTCGCTAA
CGAGGATTGTTGAGGACGCGGGCTCGGAAAATACGAGTGGAGGGGAGGGGGTGGGAGGTGGAGGT
GTAGTGGAGGTGTAGATGGGTGTGGGTGGGTGTGGTGGAGAATGGATGGGTGGGTATAAAGGGTA
GATGTGTGGATTGGTGTGGATTGGTGTGGATTGGTAGTGGAATGC
Found at i:2145 original size:16 final size:16
Alignment explanation
Indices: 2124--2167 Score: 88
Period size: 16 Copynumber: 2.8 Consensus size: 16
2114 TGTCTCTTCC
2124 CTTTTCTCCGCTGTCT
1 CTTTTCTCCGCTGTCT
2140 CTTTTCTCCGCTGTCT
1 CTTTTCTCCGCTGTCT
2156 CTTTTCTCCGCT
1 CTTTTCTCCGCT
2168 CTCTACCTCT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 28 1.00
ACGTcount: A:0.00, C:0.39, G:0.11, T:0.50
Consensus pattern (16 bp):
CTTTTCTCCGCTGTCT
Left flanking sequence: Indices 1624 -- 2123
AGAGTAGTGAGGGGCCGGTTCCGGCGCACGGGGCGCGCTGCGGGGCGTCGGGCGCGGTGTCAGGT
GGCTAGTGCCGGCTTCGCTGTCTCGTGGGTGTTCGCTGTCACTGCCTGGGCCCTCCCGGCCGGGG
TCCCAGGGTCTGATTGGTTGCAACCGGTGTCGTGATTCGTCCTGCAGACAGCCCGCCTCATAATA
TCGATCAAGGCGGGTACCCCTAGGAAAATAAGGTTGCAAACGCCTACTACCGTCGCTGGCGAGCG
GGCCCGCAGCGACGCGTCAGACGGGGGCTGCCACGACGAGGGTGGCTAGGTTTTGTTTTTTGGTG
GCTGTTGGGAGTGAAGTCTCGGGTGCTACCTGCACACCCCTTCCGTTGACATGCTGACGTCGTAA
TAAAGTTTATCGCCTTTGCGCTGGCCCTACTACGTGACTAGTGTACAGTTTTCTTTACGCTGTCT
ACGCTGTCTATGCTGTCTTTACCCTTTTTCTCTGCTGTCTCTTCC
Right flanking sequence: Indices 2168 -- 2667
CTCTACCTCTTCTGTCTGAGCCCATATTAACCGTGCCGGGCTTGCAGCCAACGGCGCATCACGCC
ACCCCGTCAGGTTTGGGTTGGTGCTCGCGATGGTTGGCGGGACAACCGCCGGTTGCACGGTGGAG
CCAGCGACGGGGGGGTGGCCACCGGTTGCAAGCAACCGTGGGCTGCCAGGGGTGTCTCGGGCCCG
TCGCGTGGACGTGTCGACGTGCATATTTTTTGCCCGATCGGGAAGGAAGACCGAGCTTCGCGCCC
AAAACGGCAATGGCCCACCCACAACGGTCGGGCTCGCTAACGAGGATTGTTGAGGACGCGGGCTC
GGAAAATACGAGTGGAGGGGAGGGGGTGGGAGGTGGAGGTGTAGTGGAGGTGTAGATGGGTGTGG
GTGGGTGTGGTGGAGAATGGATGGGTGGGTATAAAGGGTAGATGTGTGGATTGGTGTGGATTGGT
GTGGATTGGTAGTGGAATGCGCGTGGGTGAGTAAAGTATTGTTGT
Found at i:2616 original size:10 final size:10
Alignment explanation
Indices: 2601--2638 Score: 67
Period size: 10 Copynumber: 3.7 Consensus size: 10
2591 AAGGGTAGAT
2601 GTGTGGATTG
1 GTGTGGATTG
2611 GTGTGGATTG
1 GTGTGGATTG
2621 GTGTGGATTG
1 GTGTGGATTG
2631 GTAGTGGA
1 GT-GTGGA
2639 ATGCGCGTGG
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
10 22 0.81
11 5 0.19
ACGTcount: A:0.13, C:0.00, G:0.50, T:0.37
Consensus pattern (10 bp):
GTGTGGATTG
Left flanking sequence: Indices 2101 -- 2600
CCTTTTTCTCTGCTGTCTCTTCCCTTTTCTCCGCTGTCTCTTTTCTCCGCTGTCTCTTTTCTCCG
CTCTCTACCTCTTCTGTCTGAGCCCATATTAACCGTGCCGGGCTTGCAGCCAACGGCGCATCACG
CCACCCCGTCAGGTTTGGGTTGGTGCTCGCGATGGTTGGCGGGACAACCGCCGGTTGCACGGTGG
AGCCAGCGACGGGGGGGTGGCCACCGGTTGCAAGCAACCGTGGGCTGCCAGGGGTGTCTCGGGCC
CGTCGCGTGGACGTGTCGACGTGCATATTTTTTGCCCGATCGGGAAGGAAGACCGAGCTTCGCGC
CCAAAACGGCAATGGCCCACCCACAACGGTCGGGCTCGCTAACGAGGATTGTTGAGGACGCGGGC
TCGGAAAATACGAGTGGAGGGGAGGGGGTGGGAGGTGGAGGTGTAGTGGAGGTGTAGATGGGTGT
GGGTGGGTGTGGTGGAGAATGGATGGGTGGGTATAAAGGGTAGAT
Right flanking sequence: Indices 2639 -- 3138
ATGCGCGTGGGTGAGTAAAGTATTGTTGTTAATACGCGTAGACTAAGTTTCTTGTTTACATTCTT
TTGCAGAATATTTGTAATAAGGTATAACAGAAGGAATTCACGGGATCCACCGAGGCCAGAAGGCT
TATCAGATCCATCAGATCGCTAGCGGTTTTAGTCCGACTAAACGGCGGGAAATCCCGGGGTAGCC
AGGGGACCCGGGGTAACAATGGGTTTGACGTTATTATTGGTACCTGAGTCACGAGACGGCTAAGA
GTGTGGCTGTGGCTGTGGATAGGTGAAGTGGGTGAAGTGGGAGTGGGGGTAAATGGGAGTAAAGT
GTGGGTTGGAGAGTGGGTTGAAGAGTGGGTTGAGAGTGGGTTAAAGTGTAGGCAGAAGTGCAGAG
TGAAGTGTAGGGTGAGTATGGGTTAAGTGTGGTGTGGCTTTTCTCACAAATGACACTTGAATACC
CTCTGATTCGATATCTGTTGGGTTCTCGCACATGGGACATTTTAG
Found at i:2981 original size:12 final size:12
Alignment explanation
Indices: 2964--3005 Score: 68
Period size: 12 Copynumber: 3.6 Consensus size: 12
2954 GGAGTAAAGT
2964 GTGGGTTGGAGA
1 GTGGGTTGGAGA
*
2976 GTGGGTTGAAGA
1 GTGGGTTGGAGA
2988 GTGGGTT-GAGA
1 GTGGGTTGGAGA
2999 GTGGGTT
1 GTGGGTT
3006 AAAGTGTAGG
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
11 10 0.36
12 18 0.64
ACGTcount: A:0.17, C:0.00, G:0.55, T:0.29
Consensus pattern (12 bp):
GTGGGTTGGAGA
Left flanking sequence: Indices 2464 -- 2963
CTAACGAGGATTGTTGAGGACGCGGGCTCGGAAAATACGAGTGGAGGGGAGGGGGTGGGAGGTGG
AGGTGTAGTGGAGGTGTAGATGGGTGTGGGTGGGTGTGGTGGAGAATGGATGGGTGGGTATAAAG
GGTAGATGTGTGGATTGGTGTGGATTGGTGTGGATTGGTAGTGGAATGCGCGTGGGTGAGTAAAG
TATTGTTGTTAATACGCGTAGACTAAGTTTCTTGTTTACATTCTTTTGCAGAATATTTGTAATAA
GGTATAACAGAAGGAATTCACGGGATCCACCGAGGCCAGAAGGCTTATCAGATCCATCAGATCGC
TAGCGGTTTTAGTCCGACTAAACGGCGGGAAATCCCGGGGTAGCCAGGGGACCCGGGGTAACAAT
GGGTTTGACGTTATTATTGGTACCTGAGTCACGAGACGGCTAAGAGTGTGGCTGTGGCTGTGGAT
AGGTGAAGTGGGTGAAGTGGGAGTGGGGGTAAATGGGAGTAAAGT
Right flanking sequence: Indices 3006 -- 3505
AAAGTGTAGGCAGAAGTGCAGAGTGAAGTGTAGGGTGAGTATGGGTTAAGTGTGGTGTGGCTTTT
CTCACAAATGACACTTGAATACCCTCTGATTCGATATCTGTTGGGTTCTCGCACATGGGACATTT
TAGAACCATTCATGCAACGCTGCAACCGGTGGCTGCAACCATGAGTTCATGATTGCAGTCATCAG
CGACACAGTAGACGCTACAGGGTGTGTCAAGAATCTCTGGTCATTGCTCACCACCTCGCCAACAT
TTATTCTACTCCAGACCACCTGTGCTCAACCTCCACACCACCCGTGCTCTTTTTGCTCCAACGTA
CAGCCTGGTACGACTCAGCAGCGCCTCCAGCAGTCCAGCACCATGCGATGAGCCCCGGCGGTTGG
AGACACGCTACCTCAGACACTTCTCGCCACCAATCGAATGATCCTCCGGTGCGTCAATGACACTA
ACCATCTAATCAGTTCACGAGTCACCACGCAAGCACGAACCACGC
Found at i:4301 original size:14 final size:14
Alignment explanation
Indices: 4282--4324 Score: 59
Period size: 14 Copynumber: 3.1 Consensus size: 14
4272 ACTTCCTCAT
4282 CCCAAGCCAATGAA
1 CCCAAGCCAATGAA
4296 CCCAAGCCAATGAA
1 CCCAAGCCAATGAA
** *
4310 TTCAATCCAATGAA
1 CCCAAGCCAATGAA
4324 C
1 C
4325 TTTTTTACCT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
14 25 1.00
ACGTcount: A:0.42, C:0.33, G:0.12, T:0.14
Consensus pattern (14 bp):
CCCAAGCCAATGAA
Left flanking sequence: Indices 3782 -- 4281
AACGATGAAGACCCTGCCAGGTCGAACCCTGACGCCTACGTTGTTAAATCCATTGTTGGATTATC
GAGATCTTGTTGAACACTTCTCAATCAGCCAATGAACACATGCTCAACCCGAGCCAGTACAGTCG
AAGATGCAAACTATCGAGACTTGCCCCAGTCGAAACCGGACGCCAAATCTACATGGTTTAATCCA
TTGGTTGATTACCCGGTGCTTGTAAACACCTGCTCAACCCGCCAATGAACCACCTACAATATGGA
TGAAACTATGAAGACCTTGCCCAGGTCAAACCCGACGCCAAACCTACGTTGTTGATTTCATTGAC
TAATTAGAGGACTCATTTCACTTCCTCAACCCAAGCCAATGAAACTTTCTCATCCTGAGCCAGTG
AACATTCTACAACCCGGACAAACTATAAGGACCCTTGCCCAGGTCGAACGCCAAACCTACATTGT
TAATTCCCTTGTTTAATTATCCGGTGCTCGTTAACACTTCCTCAT
Right flanking sequence: Indices 4325 -- 4824
TTTTTTACCTGGACAAACTATCAAGACCCAACCCAGGTTCCCCATGACGCTCAAATTGTCCCATT
GACTAACCAGAGGGCTCATTCACTCCCAACCCAACGAACACATCCACCCTGACTCGAACGTTGAT
GTCTCTTTCTGCCGCTCTACATCGCTCCTACACGCTCCTATACGCTCCCCACCCCCATCGCTTCA
TCCTCCTTTATTGTCTATTCAGTCGTCCAGGGGCCCAAACTCGCCCTCGAAAATCGTCGCTCCGG
CCTTGCGCCGGTTCTCGATCTCCACACACTCGTCCATCTCCAACACCGCCTGCGCAGTGGGCCGG
TCAAACGGGTTGGGCCGCAACATCTTCTGCACCAACCGGTCCAAGTTCATCAGGTCCCCCTCAAC
CAAGAATTGAGGGGCCAGCGCAGGGATGTCGTCGATGGTCTCGCACGCCTGGCGCGCCGCCACCG
CCGGACACAGCAACGCCGGCACGGGCAACTTGACGCTCAGGGTCA
Found at i:5993 original size:21 final size:21
Alignment explanation
Indices: 5931--6065 Score: 89
Period size: 21 Copynumber: 6.6 Consensus size: 21
5921 GAACGAGCGG
*
5931 TCTCGGAACGACTCGGGA-TT
1 TCTCGGAACGACTCGGGACCT
* * * *
5951 GTCTCGTAAGGACGCGGAACCT
1 -TCTCGGAACGACTCGGGACCT
*
5973 TCTCGTAACGACTCGGGA-C-
1 TCTCGGAACGACTCGGGACCT
* *
5992 -CTCGTAACGACTCGGGACCG
1 TCTCGGAACGACTCGGGACCT
* * *
6012 TCTCGGAAAGTCTCGGAACCT
1 TCTCGGAACGACTCGGGACCT
* * * *
6033 TCTCGGAACGTCTCAGAACCG
1 TCTCGGAACGACTCGGGACCT
*
6054 TCGCGGAACGAC
1 TCTCGGAACGAC
6066 CCACGGCCGA
Statistics
Matches: 92, Mismatches: 18, Indels: 8
0.78 0.15 0.07
Matches are distributed among these distances:
18 17 0.18
19 1 0.01
20 1 0.01
21 72 0.78
22 1 0.01
ACGTcount: A:0.22, C:0.30, G:0.28, T:0.19
Consensus pattern (21 bp):
TCTCGGAACGACTCGGGACCT
Left flanking sequence: Indices 5431 -- 5930
GCACCTCCGTGAGCACCCGGAGCGCCTCGATCTCGCGCTCGATGGCCTTGCGCTCGTGCTTGCCG
CGGAGCTGCCGCCGCAGCCGCTTGATGGCGTACTTCTGGACGTCGCCGCCGCCGTCGGAGCCCAA
CGTGCACTCGTAGGCCACCAGGAACTCGCCCAGCCCGATGTAGGCCAAGTTCTTCATCCCGAACT
TCAGGATCAAGTGCTCGTCGGCCTGGATGAGGCCCGGGGGCTTGGCGACGATGGTGGCCTCGGGG
TCGTCGCCCGGGTCGTCGTCGAGCTCGGGGATGCCGTCGATCTCGGCGCCCTTGGGCCGCAACGC
CAGTTTCAGGTACATGAGGAGGTTGGTGGGGGTCAGGGGCTCGTGGTGGGCCGCCACCGCGGGCG
GGGCACAGGAGATGTAGAGGTTTTTGGGGTTCTTTTTCTCGTCGAACGAGCTGGTGGCTGCGAAG
AGCGCCAGGTCGAGGGGGGACAGCGAGCCGCGGGTGAACGAGCGG
Right flanking sequence: Indices 6066 -- 6565
CCACGGCCGAGCTCGCGCAACGTCTCCCGCCCAAACGTGTCGCTGGCCAGCCCGGGAAAGCCGCG
GTGGCTCGAATGGCTCCCATGGCCTCCAAGACCCCCATTGCCTCCACTGTCCGGCGAAAACGCAC
ACGGCGTCAGATGGCTCTTCTTGACCGACTTCGTTGGGGTCTCGGGCACACTAATATTCATATCA
AGGTCCAAATCAAGATCAATGTGCGGGTGGCGCTTGCCCGTCAGCACCTGCGCCAGCGGCCCCCC
GACCCGGAAAAGCAGCACCGTGGAGTCGTTCACGAACGTCAGCGTGTTGCGCCCGAGCTCGATCG
ACACTTCCAGCATGTCGTCGTGCTGCGGGGTGGCCGCGTACTTGTCCGCGTACTTGTTGGTGTTG
ATCATCGTCAACGGGTTCTTCTTGATCGGGGTCTCCGGGAGCTTGTGGGTGGGGTGGGGCGCTGC
CAGCAGCTTTTTCACGAGGCCCAGCAGCTTGAACGCGGTCTGGAG
Found at i:5997 original size:18 final size:18
Alignment explanation
Indices: 5974--6010 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
5964 GCGGAACCTT
5974 CTCGTAACGACTCGGGAC
1 CTCGTAACGACTCGGGAC
5992 CTCGTAACGACTCGGGAC
1 CTCGTAACGACTCGGGAC
6010 C
1 C
6011 GTCTCGGAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.22, C:0.35, G:0.27, T:0.16
Consensus pattern (18 bp):
CTCGTAACGACTCGGGAC
Left flanking sequence: Indices 5474 -- 5973
GGCCTTGCGCTCGTGCTTGCCGCGGAGCTGCCGCCGCAGCCGCTTGATGGCGTACTTCTGGACGT
CGCCGCCGCCGTCGGAGCCCAACGTGCACTCGTAGGCCACCAGGAACTCGCCCAGCCCGATGTAG
GCCAAGTTCTTCATCCCGAACTTCAGGATCAAGTGCTCGTCGGCCTGGATGAGGCCCGGGGGCTT
GGCGACGATGGTGGCCTCGGGGTCGTCGCCCGGGTCGTCGTCGAGCTCGGGGATGCCGTCGATCT
CGGCGCCCTTGGGCCGCAACGCCAGTTTCAGGTACATGAGGAGGTTGGTGGGGGTCAGGGGCTCG
TGGTGGGCCGCCACCGCGGGCGGGGCACAGGAGATGTAGAGGTTTTTGGGGTTCTTTTTCTCGTC
GAACGAGCTGGTGGCTGCGAAGAGCGCCAGGTCGAGGGGGGACAGCGAGCCGCGGGTGAACGAGC
GGTCTCGGAACGACTCGGGATTGTCTCGTAAGGACGCGGAACCTT
Right flanking sequence: Indices 6011 -- 6510
GTCTCGGAAAGTCTCGGAACCTTCTCGGAACGTCTCAGAACCGTCGCGGAACGACCCACGGCCGA
GCTCGCGCAACGTCTCCCGCCCAAACGTGTCGCTGGCCAGCCCGGGAAAGCCGCGGTGGCTCGAA
TGGCTCCCATGGCCTCCAAGACCCCCATTGCCTCCACTGTCCGGCGAAAACGCACACGGCGTCAG
ATGGCTCTTCTTGACCGACTTCGTTGGGGTCTCGGGCACACTAATATTCATATCAAGGTCCAAAT
CAAGATCAATGTGCGGGTGGCGCTTGCCCGTCAGCACCTGCGCCAGCGGCCCCCCGACCCGGAAA
AGCAGCACCGTGGAGTCGTTCACGAACGTCAGCGTGTTGCGCCCGAGCTCGATCGACACTTCCAG
CATGTCGTCGTGCTGCGGGGTGGCCGCGTACTTGTCCGCGTACTTGTTGGTGTTGATCATCGTCA
ACGGGTTCTTCTTGATCGGGGTCTCCGGGAGCTTGTGGGTGGGGT
Found at i:6046 original size:10 final size:10
Alignment explanation
Indices: 6010--6063 Score: 54
Period size: 10 Copynumber: 5.2 Consensus size: 10
6000 GACTCGGGAC
6010 CGTCTCGGAA
1 CGTCTCGGAA
*
6020 AGTCTCGGAA
1 CGTCTCGGAA
*
6030 CCTTCTCGGAA
1 -CGTCTCGGAA
*
6041 CGTCTCAGAA
1 CGTCTCGGAA
*
6051 CCGTCGCGGAA
1 -CGTCTCGGAA
6062 CG
1 CG
6064 ACCCACGGCC
Statistics
Matches: 35, Mismatches: 7, Indels: 4
0.76 0.15 0.09
Matches are distributed among these distances:
10 19 0.54
11 16 0.46
ACGTcount: A:0.22, C:0.31, G:0.28, T:0.19
Consensus pattern (10 bp):
CGTCTCGGAA
Left flanking sequence: Indices 5510 -- 6009
CAGCCGCTTGATGGCGTACTTCTGGACGTCGCCGCCGCCGTCGGAGCCCAACGTGCACTCGTAGG
CCACCAGGAACTCGCCCAGCCCGATGTAGGCCAAGTTCTTCATCCCGAACTTCAGGATCAAGTGC
TCGTCGGCCTGGATGAGGCCCGGGGGCTTGGCGACGATGGTGGCCTCGGGGTCGTCGCCCGGGTC
GTCGTCGAGCTCGGGGATGCCGTCGATCTCGGCGCCCTTGGGCCGCAACGCCAGTTTCAGGTACA
TGAGGAGGTTGGTGGGGGTCAGGGGCTCGTGGTGGGCCGCCACCGCGGGCGGGGCACAGGAGATG
TAGAGGTTTTTGGGGTTCTTTTTCTCGTCGAACGAGCTGGTGGCTGCGAAGAGCGCCAGGTCGAG
GGGGGACAGCGAGCCGCGGGTGAACGAGCGGTCTCGGAACGACTCGGGATTGTCTCGTAAGGACG
CGGAACCTTCTCGTAACGACTCGGGACCTCGTAACGACTCGGGAC
Right flanking sequence: Indices 6064 -- 6563
ACCCACGGCCGAGCTCGCGCAACGTCTCCCGCCCAAACGTGTCGCTGGCCAGCCCGGGAAAGCCG
CGGTGGCTCGAATGGCTCCCATGGCCTCCAAGACCCCCATTGCCTCCACTGTCCGGCGAAAACGC
ACACGGCGTCAGATGGCTCTTCTTGACCGACTTCGTTGGGGTCTCGGGCACACTAATATTCATAT
CAAGGTCCAAATCAAGATCAATGTGCGGGTGGCGCTTGCCCGTCAGCACCTGCGCCAGCGGCCCC
CCGACCCGGAAAAGCAGCACCGTGGAGTCGTTCACGAACGTCAGCGTGTTGCGCCCGAGCTCGAT
CGACACTTCCAGCATGTCGTCGTGCTGCGGGGTGGCCGCGTACTTGTCCGCGTACTTGTTGGTGT
TGATCATCGTCAACGGGTTCTTCTTGATCGGGGTCTCCGGGAGCTTGTGGGTGGGGTGGGGCGCT
GCCAGCAGCTTTTTCACGAGGCCCAGCAGCTTGAACGCGGTCTGG
Found at i:6055 original size:11 final size:11
Alignment explanation
Indices: 6002--6062 Score: 63
Period size: 11 Copynumber: 5.7 Consensus size: 11
5992 CTCGTAACGA
*
6002 CTCGGGACCGT
1 CTCGGAACCGT
*
6013 CTCGGAA-AGT
1 CTCGGAACCGT
*
6023 CTCGGAACCTT
1 CTCGGAACCGT
6034 CTCGGAA-CGT
1 CTCGGAACCGT
*
6044 CTCAGAACCGT
1 CTCGGAACCGT
*
6055 CGCGGAAC
1 CTCGGAAC
6063 GACCCACGGC
Statistics
Matches: 40, Mismatches: 8, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
10 17 0.43
11 23 0.57
ACGTcount: A:0.21, C:0.33, G:0.28, T:0.18
Consensus pattern (11 bp):
CTCGGAACCGT
Left flanking sequence: Indices 5502 -- 6001
TGCCGCCGCAGCCGCTTGATGGCGTACTTCTGGACGTCGCCGCCGCCGTCGGAGCCCAACGTGCA
CTCGTAGGCCACCAGGAACTCGCCCAGCCCGATGTAGGCCAAGTTCTTCATCCCGAACTTCAGGA
TCAAGTGCTCGTCGGCCTGGATGAGGCCCGGGGGCTTGGCGACGATGGTGGCCTCGGGGTCGTCG
CCCGGGTCGTCGTCGAGCTCGGGGATGCCGTCGATCTCGGCGCCCTTGGGCCGCAACGCCAGTTT
CAGGTACATGAGGAGGTTGGTGGGGGTCAGGGGCTCGTGGTGGGCCGCCACCGCGGGCGGGGCAC
AGGAGATGTAGAGGTTTTTGGGGTTCTTTTTCTCGTCGAACGAGCTGGTGGCTGCGAAGAGCGCC
AGGTCGAGGGGGGACAGCGAGCCGCGGGTGAACGAGCGGTCTCGGAACGACTCGGGATTGTCTCG
TAAGGACGCGGAACCTTCTCGTAACGACTCGGGACCTCGTAACGA
Right flanking sequence: Indices 6063 -- 6562
GACCCACGGCCGAGCTCGCGCAACGTCTCCCGCCCAAACGTGTCGCTGGCCAGCCCGGGAAAGCC
GCGGTGGCTCGAATGGCTCCCATGGCCTCCAAGACCCCCATTGCCTCCACTGTCCGGCGAAAACG
CACACGGCGTCAGATGGCTCTTCTTGACCGACTTCGTTGGGGTCTCGGGCACACTAATATTCATA
TCAAGGTCCAAATCAAGATCAATGTGCGGGTGGCGCTTGCCCGTCAGCACCTGCGCCAGCGGCCC
CCCGACCCGGAAAAGCAGCACCGTGGAGTCGTTCACGAACGTCAGCGTGTTGCGCCCGAGCTCGA
TCGACACTTCCAGCATGTCGTCGTGCTGCGGGGTGGCCGCGTACTTGTCCGCGTACTTGTTGGTG
TTGATCATCGTCAACGGGTTCTTCTTGATCGGGGTCTCCGGGAGCTTGTGGGTGGGGTGGGGCGC
TGCCAGCAGCTTTTTCACGAGGCCCAGCAGCTTGAACGCGGTCTG
Found at i:7814 original size:22 final size:22
Alignment explanation
Indices: 7787--7835 Score: 80
Period size: 22 Copynumber: 2.2 Consensus size: 22
7777 TGTCTTTTGG
*
7787 TGAAACAGACAGTGTTTACTTT
1 TGAAACAGACAGTGTTTACTGT
*
7809 TGAAACAGACAGTGTTTTCTGT
1 TGAAACAGACAGTGTTTACTGT
7831 TGAAA
1 TGAAA
7836 AACTCCTCTT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.33, C:0.12, G:0.20, T:0.35
Consensus pattern (22 bp):
TGAAACAGACAGTGTTTACTGT
Left flanking sequence: Indices 7287 -- 7786
CCGGGAGCCGCGGGACGGGCTCTGGGGGTGGCGTCGAGCGGTGGGTCTGGGTGGCTGGTGGGTCC
GGGCGCGTGGTCGTGCTCTTCCGACAGCTGGGAGCGCAGCAGGCGGTTGTAGCGGAGCCGGGGCC
GAACCGAGAACGGAGGCGACTTGTTGATCTTCTTCGGGGCCTTGGCGAGTTCGTCTGCGATGTCA
TCGAGGATCAACAGGTTGAACAGGCGCGAGAACTGCCCGTTGGTGAAGTACTCGAGCTCGTCGGA
GCGCGGCAGTGACGTCATGGTGGGAGAGGTGGGGCAGTGGTGGGGTAGGGGTGTGGGGGGGAGTT
GTGGTGTAGTAGTGGTGGTAGTGGGGTACTGGTGGTGTTTGGTGTGCGTGGAGGTGTTTCAGGTG
GTGTTTCGTGGCGTTTGGTGGCGTTTCTAGGTGGCTCTGAGTCTCCTGGTGTTCCTGGAAGAAAC
GGTGGAGAGGACGTAGAAACGGTGGTAAAACGGGCTGTCTTTTGG
Right flanking sequence: Indices 7836 -- 8335
AACTCCTCTTGCGTGGTTTGGTGCTCACACACGTGTGGTAAGCACTAGCACTGGTTGGTTTCGCC
CCGGTGGGTATGGGTATCGGACCGTAAAAGTAACAGTAACACTCCTACGGGCTAGCAGCAAACGC
AGCGGCACGTGGCTGGGTCTCAGGCACTCTCGTGTCGCGCGGGTGGGTCTCGGAAGTGTATCCAG
ACCTCGTCAGCGATCAGCAGCAAAAAAGCCAATCGGCGAGTAAACACAGCAGGTGCGGTAGCAGG
TGCGGTCGCAGGCGCGGTCTCAGACACAGCAGGGATACAGCCAAACACTCCGTGTGGGGCCAGCG
GTCCAGGGGCGTGGGTTCGGGCCTCGTGGGTCGCTAGTCTTGCTCTCGCGTGAACGGGCGCTCCG
GGCGGGTTCCGTTGCAGGGGCGGTGCGGGGGGCAAGCAGGGGGCGTGGGTAGCAGGCACGCCTAG
TTGTAAGCTCTGGGGACGCACGCTCGTGGAACGGCGTCGGGTTCA
Found at i:8114 original size:12 final size:12
Alignment explanation
Indices: 8079--8114 Score: 54
Period size: 12 Copynumber: 3.0 Consensus size: 12
8069 AGTAAACACA
*
8079 GCAGGTGCGGTA
1 GCAGGTGCGGTC
8091 GCAGGTGCGGTC
1 GCAGGTGCGGTC
*
8103 GCAGGCGCGGTC
1 GCAGGTGCGGTC
8115 TCAGACACAG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.11, C:0.25, G:0.50, T:0.14
Consensus pattern (12 bp):
GCAGGTGCGGTC
Left flanking sequence: Indices 7579 -- 8078
GGCAGTGGTGGGGTAGGGGTGTGGGGGGGAGTTGTGGTGTAGTAGTGGTGGTAGTGGGGTACTGG
TGGTGTTTGGTGTGCGTGGAGGTGTTTCAGGTGGTGTTTCGTGGCGTTTGGTGGCGTTTCTAGGT
GGCTCTGAGTCTCCTGGTGTTCCTGGAAGAAACGGTGGAGAGGACGTAGAAACGGTGGTAAAACG
GGCTGTCTTTTGGTGAAACAGACAGTGTTTACTTTTGAAACAGACAGTGTTTTCTGTTGAAAAAC
TCCTCTTGCGTGGTTTGGTGCTCACACACGTGTGGTAAGCACTAGCACTGGTTGGTTTCGCCCCG
GTGGGTATGGGTATCGGACCGTAAAAGTAACAGTAACACTCCTACGGGCTAGCAGCAAACGCAGC
GGCACGTGGCTGGGTCTCAGGCACTCTCGTGTCGCGCGGGTGGGTCTCGGAAGTGTATCCAGACC
TCGTCAGCGATCAGCAGCAAAAAAGCCAATCGGCGAGTAAACACA
Right flanking sequence: Indices 8115 -- 8614
TCAGACACAGCAGGGATACAGCCAAACACTCCGTGTGGGGCCAGCGGTCCAGGGGCGTGGGTTCG
GGCCTCGTGGGTCGCTAGTCTTGCTCTCGCGTGAACGGGCGCTCCGGGCGGGTTCCGTTGCAGGG
GCGGTGCGGGGGGCAAGCAGGGGGCGTGGGTAGCAGGCACGCCTAGTTGTAAGCTCTGGGGACGC
ACGCTCGTGGAACGGCGTCGGGTTCAAATGGGGGGGTGGGTGGTGTTGATTGTTTTGATTTGCAC
CGCGAAAAAGTCGATGCGCGTTCGGGGGGTCCCAAGCCACCAGGGCGCGCAAACGGGCTTTTGCC
GCGGCGAACGGCGGTGGAAAACGGGCCCACCGTGTCTGGCGGGCCCGGTTTGCCTACGGTGGGCG
CTTTTTCGCGCCCGGTTGTCTCCGCGGTTCGCGAGCTAGCGGCCCTGTTGTCACCTGTCACGGGC
GCGTCGGTGCGACTGGTCGCAACCCTTGGGTTTGTGTCACCGGCT
Found at i:9221 original size:12 final size:12
Alignment explanation
Indices: 9204--9275 Score: 56
Period size: 12 Copynumber: 5.5 Consensus size: 12
9194 CGAGCGAAGG
9204 GCGAAGAGGCGA
1 GCGAAGAGGCGA
9216 GCGAAGGAGAGCGAA
1 GCGAA-GAG-GCG-A
9231 GGGCGAAGAGGCGA
1 --GCGAAGAGGCGA
9245 GCGAAG-GAGCGA
1 GCGAAGAG-GCGA
* *
9257 GCGAAAAAGGCAA
1 GCG-AAGAGGCGA
9270 GCGAAG
1 GCGAAG
9276 CGGGTTACGA
Statistics
Matches: 49, Mismatches: 3, Indels: 16
0.72 0.04 0.24
Matches are distributed among these distances:
11 1 0.02
12 20 0.41
13 11 0.22
14 5 0.10
15 4 0.08
16 3 0.06
17 5 0.10
ACGTcount: A:0.38, C:0.15, G:0.47, T:0.00
Consensus pattern (12 bp):
GCGAAGAGGCGA
Left flanking sequence: Indices 8704 -- 9203
TGGTGGTGTTGGGCCCCTGTCTTGAGCCCGAGGCTTGTTTACCAGGACCCCGATAATAATGGAAG
CGTCGAACCTTAATATGCACGAATCTGTGGGAGCCCGCCCGGAATGTTGGGAAGAGGTGAAGAAT
AGGGGACGGAGATGGGAAGAGGGGACGGAGATGGTGGGAGATGGGGTGGGGAGGGGAGAGAAGGG
GTGGAGAAGTAGGGCGGAGAAGTGGTCAGAGAGGTGGTGGGTCGGTGGTGTGGACTTAGAGACTG
GTGGTAGTGTGCGTGTTGTGTAGTGCCGTAGCCTGTCCGGCTACTCGTCACCACGTCACTATAGC
CGGATGTCAGATCCACTAAATAACGCGGGTTTAGCCGCACGTGCAGGCAGCGGTGGCCAGTGGGC
CCACAGCAACAGTAGCAGGCGGGAATGCGTAGCGGTGGTGGCCACGGCTAGTAGCGCTAGCAGTG
GCTAGTCATGTGACAATGTCGTGACACGACGCAACCGAGCGAAGG
Right flanking sequence: Indices 9276 -- 9775
CGGGTTACGAGGCGATGGCCAGTTTGCGAAGGGAATGTGTGGAGGGGAATGTGTGGGATGAGTGG
GGAGGATTAGTGGGATTGAGTGGGTATGATTAGTGGTGGGATTGAGTGGGGATGTGTTTAGTGGT
TATGGGGTTTAGTGGTGGAGTGGTGGAATGGTAGAGTGGGTTTGAGTGGTAGAGTGGGTATTAGT
GGTAGAGTGGGTTTGAGTGGTTGTGTAGTGGTGTAGGTTTTGCTGTGTAGTGGTTGTGTAGTTGT
GTTCTGGTTATCACACTGTTTGTGTGTCATTGTTGACTTCGTGAATCTCCGACTCCCTATTTGCT
CATGACGTTGGTCGACACGACGAGATCGGTTTCATGTGCACCACGCTCCCCGCTGGTATGCCCCG
CTTGGGCCCCGCGTGGTTATGGCGTGTATTTCCCACGCCTGATCCGTTTAGCCCTTCTAGAACCC
TTGCTGCCTTTCAGGGTCCAGTCAAACGGTAGAGAACAAAAAAGA
Found at i:9237 original size:29 final size:29
Alignment explanation
Indices: 9195--9253 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
9185 CGACGCAACC
9195 GAGCGAAGGGCGAAGAGGCGAGCGAAGGA
1 GAGCGAAGGGCGAAGAGGCGAGCGAAGGA
9224 GAGCGAAGGGCGAAGAGGCGAGCGAAGGA
1 GAGCGAAGGGCGAAGAGGCGAGCGAAGGA
9253 G
1 G
9254 CGAGCGAAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.34, C:0.14, G:0.53, T:0.00
Consensus pattern (29 bp):
GAGCGAAGGGCGAAGAGGCGAGCGAAGGA
Left flanking sequence: Indices 8695 -- 9194
TGCTACGTGTGGTGGTGTTGGGCCCCTGTCTTGAGCCCGAGGCTTGTTTACCAGGACCCCGATAA
TAATGGAAGCGTCGAACCTTAATATGCACGAATCTGTGGGAGCCCGCCCGGAATGTTGGGAAGAG
GTGAAGAATAGGGGACGGAGATGGGAAGAGGGGACGGAGATGGTGGGAGATGGGGTGGGGAGGGG
AGAGAAGGGGTGGAGAAGTAGGGCGGAGAAGTGGTCAGAGAGGTGGTGGGTCGGTGGTGTGGACT
TAGAGACTGGTGGTAGTGTGCGTGTTGTGTAGTGCCGTAGCCTGTCCGGCTACTCGTCACCACGT
CACTATAGCCGGATGTCAGATCCACTAAATAACGCGGGTTTAGCCGCACGTGCAGGCAGCGGTGG
CCAGTGGGCCCACAGCAACAGTAGCAGGCGGGAATGCGTAGCGGTGGTGGCCACGGCTAGTAGCG
CTAGCAGTGGCTAGTCATGTGACAATGTCGTGACACGACGCAACC
Right flanking sequence: Indices 9254 -- 9753
CGAGCGAAAAAGGCAAGCGAAGCGGGTTACGAGGCGATGGCCAGTTTGCGAAGGGAATGTGTGGA
GGGGAATGTGTGGGATGAGTGGGGAGGATTAGTGGGATTGAGTGGGTATGATTAGTGGTGGGATT
GAGTGGGGATGTGTTTAGTGGTTATGGGGTTTAGTGGTGGAGTGGTGGAATGGTAGAGTGGGTTT
GAGTGGTAGAGTGGGTATTAGTGGTAGAGTGGGTTTGAGTGGTTGTGTAGTGGTGTAGGTTTTGC
TGTGTAGTGGTTGTGTAGTTGTGTTCTGGTTATCACACTGTTTGTGTGTCATTGTTGACTTCGTG
AATCTCCGACTCCCTATTTGCTCATGACGTTGGTCGACACGACGAGATCGGTTTCATGTGCACCA
CGCTCCCCGCTGGTATGCCCCGCTTGGGCCCCGCGTGGTTATGGCGTGTATTTCCCACGCCTGAT
CCGTTTAGCCCTTCTAGAACCCTTGCTGCCTTTCAGGGTCCAGTC
Found at i:9360 original size:23 final size:24
Alignment explanation
Indices: 9328--9392 Score: 80
Period size: 26 Copynumber: 2.7 Consensus size: 24
9318 AGGGGAATGT
9328 GTGGGA-TGAGTGGGGAGGATTA-
1 GTGGGATTGAGTGGGGAGGATTAG
* *
9350 GTGGGATTGAGTGGGTATGATTAGTG
1 GTGGGATTGAGTGGGGAGGATTA--G
9376 GTGGGATTGAGTGGGGA
1 GTGGGATTGAGTGGGGA
9393 TGTGTTTAGT
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
22 6 0.17
23 14 0.39
26 16 0.44
ACGTcount: A:0.20, C:0.00, G:0.52, T:0.28
Consensus pattern (24 bp):
GTGGGATTGAGTGGGGAGGATTAG
Left flanking sequence: Indices 8828 -- 9327
AAGAATAGGGGACGGAGATGGGAAGAGGGGACGGAGATGGTGGGAGATGGGGTGGGGAGGGGAGA
GAAGGGGTGGAGAAGTAGGGCGGAGAAGTGGTCAGAGAGGTGGTGGGTCGGTGGTGTGGACTTAG
AGACTGGTGGTAGTGTGCGTGTTGTGTAGTGCCGTAGCCTGTCCGGCTACTCGTCACCACGTCAC
TATAGCCGGATGTCAGATCCACTAAATAACGCGGGTTTAGCCGCACGTGCAGGCAGCGGTGGCCA
GTGGGCCCACAGCAACAGTAGCAGGCGGGAATGCGTAGCGGTGGTGGCCACGGCTAGTAGCGCTA
GCAGTGGCTAGTCATGTGACAATGTCGTGACACGACGCAACCGAGCGAAGGGCGAAGAGGCGAGC
GAAGGAGAGCGAAGGGCGAAGAGGCGAGCGAAGGAGCGAGCGAAAAAGGCAAGCGAAGCGGGTTA
CGAGGCGATGGCCAGTTTGCGAAGGGAATGTGTGGAGGGGAATGT
Right flanking sequence: Indices 9393 -- 9892
TGTGTTTAGTGGTTATGGGGTTTAGTGGTGGAGTGGTGGAATGGTAGAGTGGGTTTGAGTGGTAG
AGTGGGTATTAGTGGTAGAGTGGGTTTGAGTGGTTGTGTAGTGGTGTAGGTTTTGCTGTGTAGTG
GTTGTGTAGTTGTGTTCTGGTTATCACACTGTTTGTGTGTCATTGTTGACTTCGTGAATCTCCGA
CTCCCTATTTGCTCATGACGTTGGTCGACACGACGAGATCGGTTTCATGTGCACCACGCTCCCCG
CTGGTATGCCCCGCTTGGGCCCCGCGTGGTTATGGCGTGTATTTCCCACGCCTGATCCGTTTAGC
CCTTCTAGAACCCTTGCTGCCTTTCAGGGTCCAGTCAAACGGTAGAGAACAAAAAAGAAAAGCGC
CCACGCTACCGAGGTGCAACCGACGAGTGTCACGGCTAGCCGAGAAGTCATTGCCCCGGAACGAC
GCGTGGGGTGATCGTTCTATTTTGAGTTGCGCCCGGGGAGAATGG
Found at i:9457 original size:18 final size:18
Alignment explanation
Indices: 9434--9491 Score: 100
Period size: 18 Copynumber: 3.2 Consensus size: 18
9424 AGTGGTGGAA
9434 TGGTAGAGTGGGTTTGAG
1 TGGTAGAGTGGGTTTGAG
9452 TGGTAGAGTGGGTATT-AG
1 TGGTAGAGTGGGT-TTGAG
9470 TGGTAGAGTGGGTTTGAG
1 TGGTAGAGTGGGTTTGAG
9488 TGGT
1 TGGT
9492 TGTGTAGTGG
Statistics
Matches: 38, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
17 2 0.05
18 34 0.89
19 2 0.05
ACGTcount: A:0.17, C:0.00, G:0.48, T:0.34
Consensus pattern (18 bp):
TGGTAGAGTGGGTTTGAG
Left flanking sequence: Indices 8934 -- 9433
GGTGGGTCGGTGGTGTGGACTTAGAGACTGGTGGTAGTGTGCGTGTTGTGTAGTGCCGTAGCCTG
TCCGGCTACTCGTCACCACGTCACTATAGCCGGATGTCAGATCCACTAAATAACGCGGGTTTAGC
CGCACGTGCAGGCAGCGGTGGCCAGTGGGCCCACAGCAACAGTAGCAGGCGGGAATGCGTAGCGG
TGGTGGCCACGGCTAGTAGCGCTAGCAGTGGCTAGTCATGTGACAATGTCGTGACACGACGCAAC
CGAGCGAAGGGCGAAGAGGCGAGCGAAGGAGAGCGAAGGGCGAAGAGGCGAGCGAAGGAGCGAGC
GAAAAAGGCAAGCGAAGCGGGTTACGAGGCGATGGCCAGTTTGCGAAGGGAATGTGTGGAGGGGA
ATGTGTGGGATGAGTGGGGAGGATTAGTGGGATTGAGTGGGTATGATTAGTGGTGGGATTGAGTG
GGGATGTGTTTAGTGGTTATGGGGTTTAGTGGTGGAGTGGTGGAA
Right flanking sequence: Indices 9492 -- 9991
TGTGTAGTGGTGTAGGTTTTGCTGTGTAGTGGTTGTGTAGTTGTGTTCTGGTTATCACACTGTTT
GTGTGTCATTGTTGACTTCGTGAATCTCCGACTCCCTATTTGCTCATGACGTTGGTCGACACGAC
GAGATCGGTTTCATGTGCACCACGCTCCCCGCTGGTATGCCCCGCTTGGGCCCCGCGTGGTTATG
GCGTGTATTTCCCACGCCTGATCCGTTTAGCCCTTCTAGAACCCTTGCTGCCTTTCAGGGTCCAG
TCAAACGGTAGAGAACAAAAAAGAAAAGCGCCCACGCTACCGAGGTGCAACCGACGAGTGTCACG
GCTAGCCGAGAAGTCATTGCCCCGGAACGACGCGTGGGGTGATCGTTCTATTTTGAGTTGCGCCC
GGGGAGAATGGGACGATAAGGTTCACTAGACGATCGGGTCTGGAGAGCGCAGGAACCCGCCTAGG
TTTCGTGCGGACAGAGGGAGGGGGATTGAGCGGACAGGCGAAGGG
Found at i:10004 original size:28 final size:29
Alignment explanation
Indices: 9968--10055 Score: 108
Period size: 28 Copynumber: 3.1 Consensus size: 29
9958 CAGAGGGAGG
*
9968 GGGATTGAGCGGACAGGCGA-AGGGGGGT
1 GGGATTGAGCGGACAGGCGAGAAGGGGGT
* *
9996 GGGACTGAGCGGA-AGGCGAGAAGGGTGT
1 GGGATTGAGCGGACAGGCGAGAAGGGGGT
* *
10024 GAGATTGAGCGGACAGGCGATAAGAGGGGT
1 GGGATTGAGCGGACAGGCGAGAAG-GGGGT
10054 GG
1 GG
10056 TGTGGGGTGA
Statistics
Matches: 49, Mismatches: 8, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
27 6 0.12
28 29 0.59
29 9 0.18
30 5 0.10
ACGTcount: A:0.25, C:0.10, G:0.53, T:0.11
Consensus pattern (29 bp):
GGGATTGAGCGGACAGGCGAGAAGGGGGT
Left flanking sequence: Indices 9468 -- 9967
AGTGGTAGAGTGGGTTTGAGTGGTTGTGTAGTGGTGTAGGTTTTGCTGTGTAGTGGTTGTGTAGT
TGTGTTCTGGTTATCACACTGTTTGTGTGTCATTGTTGACTTCGTGAATCTCCGACTCCCTATTT
GCTCATGACGTTGGTCGACACGACGAGATCGGTTTCATGTGCACCACGCTCCCCGCTGGTATGCC
CCGCTTGGGCCCCGCGTGGTTATGGCGTGTATTTCCCACGCCTGATCCGTTTAGCCCTTCTAGAA
CCCTTGCTGCCTTTCAGGGTCCAGTCAAACGGTAGAGAACAAAAAAGAAAAGCGCCCACGCTACC
GAGGTGCAACCGACGAGTGTCACGGCTAGCCGAGAAGTCATTGCCCCGGAACGACGCGTGGGGTG
ATCGTTCTATTTTGAGTTGCGCCCGGGGAGAATGGGACGATAAGGTTCACTAGACGATCGGGTCT
GGAGAGCGCAGGAACCCGCCTAGGTTTCGTGCGGACAGAGGGAGG
Right flanking sequence: Indices 10056 -- 10555
TGTGGGGTGAGCGGAGCAGTAGGAACACCGAGCCGGCTGATTGTATGTGTAGGGCCAAAAGTGTA
GAGTATTGTGATCCAGGTCAGGGGTGCTGGGCATTAGTGGAGCGGGTTCTCCAGGTATCAGCCAT
TGTTGAAGAGTAGAGTTAGCTAGTTCAGTGGTTACTTGGTCATTAGTTAGTGGAGAAGGCTCTTC
TGGTATTGGCATATCAGCCATGGTTAGAAGTGCATATCGTTTGTCTCAAATTAACTCATAGTCCA
ACTATTGGTAGCTCGTTAAAGTGCCTAACTCACGGTACTGTCTGTCGCTGTTGTGTCTGTAACGA
CTGTAATCCGAGTGTTGTAACTTTGGAATAAACCAATAGTTGGATCAATAAGTTGAAGGAAGATA
CATATTAAGGCGTGTCTACATTTGAAGGTAGGTACGTGGTTAAATAGGGAGTGGATTGGCCCTAA
ACGGTAACTGCTTACGGATTTGATAGACAGCAGGTGATAACCATC
Found at i:13335 original size:13 final size:13
Alignment explanation
Indices: 13317--13342 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
13307 TAATTCTAGG
13317 CATTGTGTGCAAC
1 CATTGTGTGCAAC
13330 CATTGTGTGCAAC
1 CATTGTGTGCAAC
13343 TGTTATACCC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.23, G:0.23, T:0.31
Consensus pattern (13 bp):
CATTGTGTGCAAC
Left flanking sequence: Indices 12817 -- 13316
GAGAGCTTTCACATTAATCAGAACTCGGTCCTAGACGACCTCTAGCCTCGGCATAGTGGCTTGTA
GCCAATTGGTGGGAAAACAGCGAGGATGGCCAATTGGGGACTGAATTCGTTGTACTACGTACTCA
TGAGGCAGCCCAATGGCACGCAACACACCCAATCCACCCATTCGTTACATCCTTAGACTGTTCCA
CCCTCACGTCACCCTCACGTGCTTCTCACGTGCCGCACACTATAAAACCGCGATGGCTCGAAACG
AAAAACCACCGCCAGAAGATCAGTCTCTTCGAACACCTTCCTTGCCTTTTACCAGGGAGGTCCGG
GGGCTGTCTTTGCTAATGGTGTGTCAGTATTTTTTGGAACTCCCAGCACAATTTTAATTGGCACT
TTTGCCCCGGCTCTGTGTGGCCATGGCGTCGTGGCAAAAGTGAGAATTGGAGGAAGGTGGTGGGA
TGGGAAGAGTAGGGTAGAGCAACGCACGTGGGTGGTAATTCTAGG
Right flanking sequence: Indices 13343 -- 13842
TGTTATACCCAATATACCCACTATTAGCCGGGGTGCTTGGTCCTACAGTCTATGTGATGTGACGG
TGTATTTTTGCGATGAGACGTGTATGGTCGGAAAGTCTTTATTGATGAGCGATTGAATAGCTGTC
TATGGGTCATTATGTGTTCTCTGGTGCCCACTGAGAGTCTGTGTAGGCTGTTAATGAGCGATGTT
AGGTGTACTTGGCACTTTGATGGTGTGTGGTACACTGAGTTATGGGATTGAGAAATGGGTTTGAA
TCCCGTCAACGAGACAATCTGACTAGTCAACAGTCAAACAATTTTGTTGCGAAGCTACACCGTAT
ACTGCATCAGGTAAGCCATTTCAACTGTGTGATCCTGTGTAACCTTGTATGACCCTGTCTACACT
GTTCCCGTTCATATTACTCACTGATTATTACAGGATCCAACACTGGACGCAAAGCGTTAGCAATA
ACTACACCAAACGGATTAGCAAGTCGAAAACATAAGCCCTTAACC
Found at i:13881 original size:18 final size:18
Alignment explanation
Indices: 13858--13892 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
13848 CACCTAGCAA
*
13858 CCACCACCACCACCATCT
1 CCACCAACACCACCATCT
*
13876 CCACCAATACCACCATC
1 CCACCAACACCACCATC
13893 ACTAAACATA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.31, C:0.57, G:0.00, T:0.11
Consensus pattern (18 bp):
CCACCAACACCACCATCT
Left flanking sequence: Indices 13358 -- 13857
ACCCACTATTAGCCGGGGTGCTTGGTCCTACAGTCTATGTGATGTGACGGTGTATTTTTGCGATG
AGACGTGTATGGTCGGAAAGTCTTTATTGATGAGCGATTGAATAGCTGTCTATGGGTCATTATGT
GTTCTCTGGTGCCCACTGAGAGTCTGTGTAGGCTGTTAATGAGCGATGTTAGGTGTACTTGGCAC
TTTGATGGTGTGTGGTACACTGAGTTATGGGATTGAGAAATGGGTTTGAATCCCGTCAACGAGAC
AATCTGACTAGTCAACAGTCAAACAATTTTGTTGCGAAGCTACACCGTATACTGCATCAGGTAAG
CCATTTCAACTGTGTGATCCTGTGTAACCTTGTATGACCCTGTCTACACTGTTCCCGTTCATATT
ACTCACTGATTATTACAGGATCCAACACTGGACGCAAAGCGTTAGCAATAACTACACCAAACGGA
TTAGCAAGTCGAAAACATAAGCCCTTAACCCAATACACCTAGCAA
Right flanking sequence: Indices 13893 -- 14392
ACTAAACATACACCACTCAACCCGAGCCAACTAATACTACAACCTTCTTTCCATTAACCCTCCCC
ATTCAATTTTGACTAATAATAAAAACCGGTAATCTTTTAGATTTATTATCTTTCATTCTATGCCA
TTACTATATACATTTACTCGTTGGCCAACTCCGCCACAGACTTGCCGTACACCTTCTTCGCGTCG
TGGATCTTCAAGAAAGCGTTGTTGGGCCCGGGAACCTGGCCCTTGAGCACCAAAATCCCAGCGTC
GCCGTCGGCGTGCAACACCTCGTTGTTCCACACAGTGCAGTTGCGCGCACCCATGTGCCCAGGCA
TCTTCTTCCCGGGCAAAACACGACCGGGGTCCTGGTTACCACCGGAACCACCGGGGTGACGGTGG
GCCCGCGACACACCGTGCGAGGCGTTCAAACCACCGAACCCGTGTCTCTTCATCACACCAGCGAA
ACCTTTACCCTTGGACACCCCGTGCACATCCACGAGCTGACCCAC
Found at i:14990 original size:10 final size:10
Alignment explanation
Indices: 14975--14999 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
14965 GATGGGTGGG
14975 GGTGTTTGGT
1 GGTGTTTGGT
14985 GGTGTTTGGT
1 GGTGTTTGGT
14995 GGTGT
1 GGTGT
15000 GAAGAAGTGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.00, C:0.00, G:0.52, T:0.48
Consensus pattern (10 bp):
GGTGTTTGGT
Left flanking sequence: Indices 14475 -- 14974
TTGGGCAGCACCCCCGCCCGCTCGAACTTGGCCAAGTCCGCCTCACGGACGTTCTTGAGCTTGTC
GATCTGGCCAAGCAACACCAGCCAGTACCCGTGGGAGTCCACGGTTTTGTTGGCCACGACCTCGC
AGTTGTCGATCTCGATCACCGTGGCGGGATACATCTTCCCCTCCTTGGTGAACCACGACACCATC
CCTCTCTTGACCCCGAGAAGACCGGGACGTCCAAGCAACAGCTTGCGCAAATTCAGCATCTCGAG
CGAGTGGTTGACGGGCGCGGCTGCCGTGCGGATCGAGGGAACCGCATGGATCAGGGTGAGCTGCG
CCGCCCCACGAGTGAACTGCTTTAGCGTCATGGTAGGGTTGGACTTTTTTGATGAAAAATTGCGC
TACCAGTATGGTGAAAAGTGCGAGAAAAAAAAGATGGGTGGAAGGTGGGAGGGTGGAAAAAAGGT
GGAAAGAGGAGAGGTTTGGGAACGGGAATAAGAGAGATGGGTGGG
Right flanking sequence: Indices 15000 -- 15499
GAAGAAGTGTTTTACTTGAAACTCTTGTTTTCGTGGGGTGTTTCGTGTTTCGATTTGTGCCAACG
TAAACCGTTTTACCAGGTTTTATTGGACTCTCTATTAGTATTCTGGTGCGACTCACAGGAAATTT
TCGTCGGTGAATGGTGTTCGCGCTGTGTAGTAAAAGCTCTCAGTGGAAAGCATGACCAAACATCA
GGTGATCGGGCCAAATCCCGAAGTGGCCTGGTGCTTTCTTGGCCCGCTCTCTTGACCTGCTCTCT
GACCTGCTCTCTGACCTGCTCTCTGACCTGTTCTCTTGACCTATTCTCTAGACCAACTCTCCGAA
TCTGTCTACGTCACCTTCAATTTAAACCCTATGTGGTGCCAGCACTCATTCTCGTTCCCTACAGT
GGACTGTTCTATTCGACCCGCTCCACGATCGCCATGTCGCCGTTGCAGCATTAGGCACCCGACTC
ACAGCTGTCCCATTATGCGAACCGTAATTCCAACCCTATGCGACG
Found at i:15264 original size:12 final size:12
Alignment explanation
Indices: 15240--15301 Score: 97
Period size: 12 Copynumber: 5.0 Consensus size: 12
15230 TTCTTGGCCC
15240 GCTCTCTTGACCT
1 GCTCTC-TGACCT
15253 GCTCTCTGACCT
1 GCTCTCTGACCT
15265 GCTCTCTGACCT
1 GCTCTCTGACCT
15277 GCTCTCTGACCT
1 GCTCTCTGACCT
*
15289 GTTCTCTTGACCT
1 GCTCTC-TGACCT
15302 ATTCTCTAGA
Statistics
Matches: 47, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
12 35 0.74
13 12 0.26
ACGTcount: A:0.08, C:0.39, G:0.16, T:0.37
Consensus pattern (12 bp):
GCTCTCTGACCT
Left flanking sequence: Indices 14740 -- 15239
GGTTGACGGGCGCGGCTGCCGTGCGGATCGAGGGAACCGCATGGATCAGGGTGAGCTGCGCCGCC
CCACGAGTGAACTGCTTTAGCGTCATGGTAGGGTTGGACTTTTTTGATGAAAAATTGCGCTACCA
GTATGGTGAAAAGTGCGAGAAAAAAAAGATGGGTGGAAGGTGGGAGGGTGGAAAAAAGGTGGAAA
GAGGAGAGGTTTGGGAACGGGAATAAGAGAGATGGGTGGGGGTGTTTGGTGGTGTTTGGTGGTGT
GAAGAAGTGTTTTACTTGAAACTCTTGTTTTCGTGGGGTGTTTCGTGTTTCGATTTGTGCCAACG
TAAACCGTTTTACCAGGTTTTATTGGACTCTCTATTAGTATTCTGGTGCGACTCACAGGAAATTT
TCGTCGGTGAATGGTGTTCGCGCTGTGTAGTAAAAGCTCTCAGTGGAAAGCATGACCAAACATCA
GGTGATCGGGCCAAATCCCGAAGTGGCCTGGTGCTTTCTTGGCCC
Right flanking sequence: Indices 15302 -- 15801
ATTCTCTAGACCAACTCTCCGAATCTGTCTACGTCACCTTCAATTTAAACCCTATGTGGTGCCAG
CACTCATTCTCGTTCCCTACAGTGGACTGTTCTATTCGACCCGCTCCACGATCGCCATGTCGCCG
TTGCAGCATTAGGCACCCGACTCACAGCTGTCCCATTATGCGAACCGTAATTCCAACCCTATGCG
ACGTGTTTACCTCGGCGACGGTCTAGGCGCATACCGGACTCCATCAGGCGGTCATGTCAGATATT
TTACGCCCACGCGTGCCAACCCGCCTCGTGGACGGGTAGTTAGCGTGTTTGAAGCCATGAAGACG
GTCTTAGATAGCCCTGGTCGCCATTTTCTGTCTCTCTGTACCCTTTCCTGTCTGCGTTGGTACGC
CCAGATTATATGTATTGTCTATGTTTATGACTAACAACACGACAAAGATCGTCTCCGTGCCCTGG
TTGCATTAAACTCTCAGACAACGCGGTCGTCAGCCGTTTATAAAT
Found at i:15277 original size:24 final size:25
Alignment explanation
Indices: 15240--15301 Score: 108
Period size: 24 Copynumber: 2.5 Consensus size: 25
15230 TTCTTGGCCC
15240 GCTCTCTTGACCTGCTCTCTGACCT
1 GCTCTCTTGACCTGCTCTCTGACCT
15265 GCTCTC-TGACCTGCTCTCTGACCT
1 GCTCTCTTGACCTGCTCTCTGACCT
*
15289 GTTCTCTTGACCT
1 GCTCTCTTGACCT
15302 ATTCTCTAGA
Statistics
Matches: 35, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
24 23 0.66
25 12 0.34
ACGTcount: A:0.08, C:0.39, G:0.16, T:0.37
Consensus pattern (25 bp):
GCTCTCTTGACCTGCTCTCTGACCT
Left flanking sequence: Indices 14740 -- 15239
GGTTGACGGGCGCGGCTGCCGTGCGGATCGAGGGAACCGCATGGATCAGGGTGAGCTGCGCCGCC
CCACGAGTGAACTGCTTTAGCGTCATGGTAGGGTTGGACTTTTTTGATGAAAAATTGCGCTACCA
GTATGGTGAAAAGTGCGAGAAAAAAAAGATGGGTGGAAGGTGGGAGGGTGGAAAAAAGGTGGAAA
GAGGAGAGGTTTGGGAACGGGAATAAGAGAGATGGGTGGGGGTGTTTGGTGGTGTTTGGTGGTGT
GAAGAAGTGTTTTACTTGAAACTCTTGTTTTCGTGGGGTGTTTCGTGTTTCGATTTGTGCCAACG
TAAACCGTTTTACCAGGTTTTATTGGACTCTCTATTAGTATTCTGGTGCGACTCACAGGAAATTT
TCGTCGGTGAATGGTGTTCGCGCTGTGTAGTAAAAGCTCTCAGTGGAAAGCATGACCAAACATCA
GGTGATCGGGCCAAATCCCGAAGTGGCCTGGTGCTTTCTTGGCCC
Right flanking sequence: Indices 15302 -- 15801
ATTCTCTAGACCAACTCTCCGAATCTGTCTACGTCACCTTCAATTTAAACCCTATGTGGTGCCAG
CACTCATTCTCGTTCCCTACAGTGGACTGTTCTATTCGACCCGCTCCACGATCGCCATGTCGCCG
TTGCAGCATTAGGCACCCGACTCACAGCTGTCCCATTATGCGAACCGTAATTCCAACCCTATGCG
ACGTGTTTACCTCGGCGACGGTCTAGGCGCATACCGGACTCCATCAGGCGGTCATGTCAGATATT
TTACGCCCACGCGTGCCAACCCGCCTCGTGGACGGGTAGTTAGCGTGTTTGAAGCCATGAAGACG
GTCTTAGATAGCCCTGGTCGCCATTTTCTGTCTCTCTGTACCCTTTCCTGTCTGCGTTGGTACGC
CCAGATTATATGTATTGTCTATGTTTATGACTAACAACACGACAAAGATCGTCTCCGTGCCCTGG
TTGCATTAAACTCTCAGACAACGCGGTCGTCAGCCGTTTATAAAT
Found at i:17926 original size:20 final size:20
Alignment explanation
Indices: 17901--17940 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
17891 ATTTTATCAC
* *
17901 TTTCCGCCCATTTTCACCAA
1 TTTCCGACCAATTTCACCAA
*
17921 TTTCCGACCAATTTGACCAA
1 TTTCCGACCAATTTCACCAA
17941 ATTCGGATTC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.25, C:0.35, G:0.07, T:0.33
Consensus pattern (20 bp):
TTTCCGACCAATTTCACCAA
Left flanking sequence: Indices 17401 -- 17900
TGTGATGACCCACGGACCGCTCCAAATGCCCTTTTTCATCCGAGTTGCTACCCATATCACCAACT
ACGGTGACTTCTCGTACGATTGGCACGCGCTTGTGGCGATGATGGACACCACGCTTTCCCAGGGA
GCACTGTCGCGGGGTCTGGCCCAGTTCCACTTGCTCATATCCCACTCCGGGGACGACTTTCACAA
TAAAGTCTACGACAAGAACCCGGTGGCTCTCGCGCTCCTCAACGTGTACGCGGCTTACCAGGTGA
TGTTCCGCGTCTCTGTCGACCCACGGGACAATATCTGGCGGGACTATATGCTCTGGTACCAGCAG
CACTCGCACCAGGAGTGGTTTGCATCCTGGGAACCGGCGTTGTTCGAGCTCGTGGTCGAGAAGGG
GTACTTTTTCCCGGCCTATGGAGTTGTGGCAGGCTTCGATCCCGACATTTGTAACATTTTAGAGC
ATTAGTTTAGTGGTTGACTTGCCCAATTTGACAAAATTTTATCAC
Right flanking sequence: Indices 17941 -- 18440
ATTCGGATTCAAATCCAGGCGTTTCCACAAAACCCGCCATTTTCCCCCAGATTCGTCGCCAAGAC
CCCTAGCAGCCACAAAAACACCCCGACCCGCTGCCAATGTCTCTCGGCCGTTGCCACGTGCATTA
ATCCATCTAAATATCGCTAATCTCGTCGCCAGGGGCGTCAACACAAAACCAAAGAATTTCACCTG
TTTGGGCCGAGGCGCCATCGCTTGCGAATAAGCGAGTAATGGCGCCACGTCCAGGACCTACCCTG
TGAAATGTCGCCATTGTCACACAATGCCAACGGCTCAGGCGACCCCTGAGTCTGTGCACTCCCCC
CACGATCACGAGCAGGTGATGCGATAATCCCTGGTTATTTATAGTCCCTGGGGCCGACGACAGCT
CGCACCGTCGCCCGGAGGTTGCTGGCTACAACGCAACCAGCCGTCTCAGGCAATATTAGCCGGGA
TTAGCGATTGTGCCTCATCGGTTCGAAACTAGCCTGTTTCACCGC
Found at i:20980 original size:15 final size:15
Alignment explanation
Indices: 20955--21006 Score: 70
Period size: 15 Copynumber: 3.5 Consensus size: 15
20945 AATTTACTTA
*
20955 ACTTACTACTTATTC
1 ACTTATTACTTATTC
20970 ACTT-TTAACTTATTC
1 ACTTATT-ACTTATTC
*
20985 ACTTATTTCTTATTC
1 ACTTATTACTTATTC
21000 ACTTATT
1 ACTTATT
21007 CTCTTCTAGC
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
14 1 0.03
15 30 0.91
16 2 0.06
ACGTcount: A:0.25, C:0.21, G:0.00, T:0.54
Consensus pattern (15 bp):
ACTTATTACTTATTC
Left flanking sequence: Indices 20455 -- 20954
CGGCGGTGGCAGTCAACATCGGCCAGCTTTTGTTTCAGACCACTGGTTTGGCCTACTACTCGAGC
TACGTCGACCTGTTGGACCGCCTGAGCCCCGACTACCGTATGCTCTCCAACATCCCCGGGAAGCT
GGTGCTCCAGCTGCCCGAGATCATCCGCAAGCTCCCCGAGAGCGTGCGGGGCGACGTCATCGACA
TCTTTTTACGCGCTCTCCACAACGTGTTCTACTTTTGTTTGGCGTTGCTGTTGATGCTGTTTTTG
TGCTCGCTTTTCACCACCAATCTGAAGGTGCCCAAGGACTCCGAGGTGGAGATGAAGCGAAAGGA
AGAGGACGCCGAGGCGTTCAACAGGGCAGAGGAAGCCGCAGTCATGAAGAACGAAGCATAATGAG
CAGGGAGCCATTAATTACATAGCATAACGCAATACCCTGAGAAAGTGTAGGTAAATTTAATATAG
TTCGCACCAGGCAAGCCATCAAAGCTAGTATCACTAATTTACTTA
Right flanking sequence: Indices 21007 -- 21506
CTCTTCTAGCTTTATTTTGCAGTGCTCAAGTTAGCCTCGCATTGCAGCTTGCCGACACTATGGCT
AAACCAGTCCCACCAGTCGTCGCTTCGCTGGCCCTCCCCGCTTGTTGTACCCTTCCACCTCCGCT
TGTGGTATCCCTCCCGCTTACTGTAGCCGTGTCTTCCCACTTTTCAGCTCTTTTGTCCATTGCCC
CATGGGCTAACTTACCCCGGCTTCTACGTGCGTTTTCCTGCCGTCCCGAGCCACGGTGCGTAGAC
CTCGATACCAATTGCTAGGACCCGATTCGCACACCTTCGGGCAATATCGGAACCACCAGGTGGGG
TCAACCCCCACAACCGTTTAGCGGGCAGAAGTGGGGGGAGGGTATGAGCGTTGGGCCCCACCCGT
CGGACTTCTGTCAATCGGCGTCGGTGGCCATGCATGAGGCGTGGGCCGTGCATGGTTTCCTGTGC
CTTGGAGATAAGCTGCCACCCTGTTCCGTTCGTCCAGAACACGCT
Found at i:20988 original size:8 final size:8
Alignment explanation
Indices: 20962--21007 Score: 60
Period size: 8 Copynumber: 6.0 Consensus size: 8
20952 TTAACTTACT
20962 ACTTATTC
1 ACTTATTC
*
20970 ACTT-TTA
1 ACTTATTC
20977 ACTTATTC
1 ACTTATTC
20985 ACTTATT-
1 ACTTATTC
*
20992 TCTTATTC
1 ACTTATTC
21000 ACTTATTC
1 ACTTATTC
21008 TCTTCTAGCT
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
7 12 0.38
8 20 0.62
ACGTcount: A:0.24, C:0.22, G:0.00, T:0.54
Consensus pattern (8 bp):
ACTTATTC
Left flanking sequence: Indices 20462 -- 20961
GGCAGTCAACATCGGCCAGCTTTTGTTTCAGACCACTGGTTTGGCCTACTACTCGAGCTACGTCG
ACCTGTTGGACCGCCTGAGCCCCGACTACCGTATGCTCTCCAACATCCCCGGGAAGCTGGTGCTC
CAGCTGCCCGAGATCATCCGCAAGCTCCCCGAGAGCGTGCGGGGCGACGTCATCGACATCTTTTT
ACGCGCTCTCCACAACGTGTTCTACTTTTGTTTGGCGTTGCTGTTGATGCTGTTTTTGTGCTCGC
TTTTCACCACCAATCTGAAGGTGCCCAAGGACTCCGAGGTGGAGATGAAGCGAAAGGAAGAGGAC
GCCGAGGCGTTCAACAGGGCAGAGGAAGCCGCAGTCATGAAGAACGAAGCATAATGAGCAGGGAG
CCATTAATTACATAGCATAACGCAATACCCTGAGAAAGTGTAGGTAAATTTAATATAGTTCGCAC
CAGGCAAGCCATCAAAGCTAGTATCACTAATTTACTTAACTTACT
Right flanking sequence: Indices 21008 -- 21507
TCTTCTAGCTTTATTTTGCAGTGCTCAAGTTAGCCTCGCATTGCAGCTTGCCGACACTATGGCTA
AACCAGTCCCACCAGTCGTCGCTTCGCTGGCCCTCCCCGCTTGTTGTACCCTTCCACCTCCGCTT
GTGGTATCCCTCCCGCTTACTGTAGCCGTGTCTTCCCACTTTTCAGCTCTTTTGTCCATTGCCCC
ATGGGCTAACTTACCCCGGCTTCTACGTGCGTTTTCCTGCCGTCCCGAGCCACGGTGCGTAGACC
TCGATACCAATTGCTAGGACCCGATTCGCACACCTTCGGGCAATATCGGAACCACCAGGTGGGGT
CAACCCCCACAACCGTTTAGCGGGCAGAAGTGGGGGGAGGGTATGAGCGTTGGGCCCCACCCGTC
GGACTTCTGTCAATCGGCGTCGGTGGCCATGCATGAGGCGTGGGCCGTGCATGGTTTCCTGTGCC
TTGGAGATAAGCTGCCACCCTGTTCCGTTCGTCCAGAACACGCTG
Found at i:22050 original size:16 final size:16
Alignment explanation
Indices: 22029--22065 Score: 65
Period size: 16 Copynumber: 2.3 Consensus size: 16
22019 GGCCCCAGAA
22029 CCAGTGATCCACAGGT
1 CCAGTGATCCACAGGT
*
22045 CCAGTGATCCACCGGT
1 CCAGTGATCCACAGGT
22061 CCAGT
1 CCAGT
22066 ACTAACCCCA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.22, C:0.35, G:0.24, T:0.19
Consensus pattern (16 bp):
CCAGTGATCCACAGGT
Left flanking sequence: Indices 21529 -- 22028
TAGAGCCGCCACGAGAAATTGGCCGGGTGTCACAACCCACCCCCCGAGCCACAACGGCCGTGGGT
TCCACCTCCATCAGCCTCGCCCGTGCCTAGGCGAGCTGCAGAGACACGGCAAAAAATAAAGAGGG
GTAGTTATTCCGAGTTCAACCGGGGGATGGCCCCACGTAGCGGGAGCCGGTGTCGGCGGCGTCGG
GCTTATAAACGGGCGATCTCTCCGATTCTCCAGCCCCACCAGGTATTTTTCACCCACATCACCCG
ACATCCTTTGCTCCGGGGCTTTACTCCGCTAACGGCGCCGCCGCACATTGTTTAGCATTAAAAAA
TCCTTCAGCCGTTTTATGTCCCATAGCCCCTGTTAGCGATGTCAAATCCAAGTTATCCGTAAGTA
GCCACCCAGAGGCCCCCCCAATGGGGCTGGCAGCGTGGTGGGAGTGGTGCTAGCCCACGTCCACC
GCCGCTGGCCCAATATCACATGATCCGATGGGGATGGCCCCAGAA
Right flanking sequence: Indices 22066 -- 22565
ACTAACCCCAGCTTCTGGTATGGAGGAGCGGCACTGATGATTGCCTGTATGTGCACCCACCCGCT
CGATCTCGCCAAGGTCCGGCTCCAGACCGCGGCCAAGCCCGGCCAGGGCCTCATCTCGATGGTTG
TGCAAATCATCCGCAACGAGGGGTTCTTCAAGATCTACCTGGGTCTCTCGGCACTGTTGCTCCGC
CAGGCCACCTACCTGACCACCCGGTTCGGGGTGTACGAGTACCTCAAAGAATTCTACGTGGGCCA
CTACCACCGCCAGCCCACCACGTTGGTGTTACTCCCGATGTCGATGACGGCAGGCGCCCTCGGTG
GGCTCATTGGCAACCCGCTGGACGTCGTCAACATTCGGATGCAGAACGACAAGGCACTTCCCCTC
GACCAGCGTCGTAACTACCGCAATGTGGTTGACGGTCTCTATAGAATCACCACCACCGAGGGGGT
GGGCTCGCTCTTCCGCGGGTTGGCCCCCAACTTGACCCGGGGTGT
Found at i:23191 original size:16 final size:17
Alignment explanation
Indices: 23170--23202 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
23160 CCCTGAGTGG
23170 AATGGTGGGTT-GTTGT
1 AATGGTGGGTTGGTTGT
*
23186 AATGGTTGGTTGGTTGT
1 AATGGTGGGTTGGTTGT
23203 TGATGGCTGA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.12, C:0.00, G:0.42, T:0.45
Consensus pattern (17 bp):
AATGGTGGGTTGGTTGT
Left flanking sequence: Indices 22670 -- 23169
TGCTCGCGGGCCTCGTGGCCACCACCATCTGCTCGCCCGCCGACGTGGTCAAGACCCGGATCATG
AACGCCAAGGGCAAGAACAGCGGGGCCGTCACCATCCTCATGGACGCGGTGCGCAACGAGGGTCC
CGGGTTCATGTTCCGGGGGTGGTTGCCGTCGTTCATCCGGTTGGGCCCCCACACCATCGTCACGT
TTTTGGCGCTTGAGCAGTTGCGCAAGTACCGTGTAGGCATGCCCCGGTTGGCGCAGCCGGCGGCG
TTGTAGTCATTAGCATTAATAAATAATTGAGATAGTTGATGAAGGGTGTGGTTACTGCCACTGTA
GATGTTGGTTTACGCGTGTTTGTGGTGGTGGCTTTTGGTGGGTTTTGATAGCATTCGATGGCTTC
CAACCGTCAAGGGGTGTTTTGTTCTTGTGGTCAGATGGTTGATAGCCTGTTTCAGCTACATGCAT
GGAACGCGTGGTGTTTAGGGGGTTATGGTAGTGAACCCTGAGTGG
Right flanking sequence: Indices 23203 -- 23702
TGATGGCTGATCGTACGCTTGATTTGTGAGTAGTACATGGTTGGTTAACTAAACGACAATATTGG
TATTCAAAGAAATGTTCCTTCGTTAGTGAACTAAACGGTAGCACATTTGTAAGTCACTTGATACT
ATCACAAATCACTGTCACTTAGTAGCACACGACGGCCCACATCCACAGTCTTCAACTCTCTCGAC
TTGAACGATACTTTTCGTCGTCAACCCTACACAAACCACAACAGTGGGGCCTTTGCCCACCCAAA
TAGGCAAATTCGCCAATTATCGTATTTTCTATGTAATGCGTGTTTAAACCTGGATGTTGTCCAAC
TCGGCCTTCTCGAAAGCCTCCTTCTCGGCCTCCAAGATGTAGGGGATCAAGTAGTGGTCGTCCTG
CTCGGGCTGGACAGCCTTGGAAGCGGGCAACAACTCGTGGGACAAAGCCAACTGGTGGGCAGTGA
TCTGGCGGTACACGCGGGAGTACTGCTCCTCAGCGGGCAACCGGT
Found at i:30367 original size:12 final size:12
Alignment explanation
Indices: 30350--30412 Score: 99
Period size: 12 Copynumber: 5.2 Consensus size: 12
30340 GGTGGTGAAC
30350 GGTGAGCCTGGT
1 GGTGAGCCTGGT
30362 GGTGAGCGCTGGT
1 GGTGAGC-CTGGT
*
30375 GGTGAGCCTAGT
1 GGTGAGCCTGGT
*
30387 GGTGAGCCTAGT
1 GGTGAGCCTGGT
30399 GGTGAGCCTGGT
1 GGTGAGCCTGGT
30411 GG
1 GG
30413 CTATTATGTG
Statistics
Matches: 48, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
12 36 0.75
13 12 0.25
ACGTcount: A:0.11, C:0.16, G:0.49, T:0.24
Consensus pattern (12 bp):
GGTGAGCCTGGT
Left flanking sequence: Indices 29850 -- 30349
CCACCACCCGCCGGGTGTGCTGGTAGGTCCGGAACTCCATCAAGTAGATCCCCTGCCAGGTGCCG
AGCGCCAATCGCCCGTTCTCGATCGGAATCGTAAGCGACACCCCCACCAACAGCGACTTGACGTG
GCCCGGCATGTCGTCGGGACCCTCGTCGTCGTGGATGTAAAAGTCGCCCTCGGGAGCCACCCGGT
CCATCAGCGCCGTCATGTCCTTGCGCACCGTCGGGTCACAGTTCTCGTTGAGCAGCAACGCCGCC
AGGGTGTGCTGCAAAAACAAGTTGACCAACCCCACCTTGTAGTCCTTGAGCGGAGGCAATTGCTT
CATGATCTCGTCGGTGACGAGGTACAGCCCCTTCTTGCGGGGAGCCAAGCTAAACTTCACCTGTT
GCCACGACATGGTTTTTCGCACAGCAAGGTCGGGTCGGTTGTAGCAAGTGGTGGTACACGTGATG
CGCGGGAGGCTGGTGGTGCGTTGGTGGTGAGCGCTGGTGGTGAAC
Right flanking sequence: Indices 30413 -- 30912
CTATTATGTGAGCGGTGGTTTGAGCGCTGGTGAGCTGGTGATAATAGAAGGTTGAGCTACTTAAT
AGAAGTTTGAGCTACTGATTGACGCTGATCGAAGGTTACCTAAACGGGTATAATTGGAGTTTAGC
TGTTGATCTTAGCGAACAATGCGTTAGTGACACTATAGGCTACCTCGAGGAGGATCAATTCACGG
ACTCTTTCGTGGAGTACTACTGCGGCTCCTATCACGTCTACTACTTAGGCTACCATCGTGGACCT
ACCATCTTGAACTACTTCAGCTCCTATCACTTCTACTACTTCATAGGCTACCATCGTGGACTACT
TCAGCTCCTATTTTGGACTACCACCTCGTAGGCTACCATCTCCTGAGCTAACCTGAGACACTGTC
CACAGTCTGTCACGCCAACACTCAAACCGGATGGGACTTCTTCCCATACCTACTACCTAGAATCT
CACTGTAATTCCTTGAATGAGCTTACACTACCACCATCTTCTCAC
Found at i:30383 original size:25 final size:24
Alignment explanation
Indices: 30350--30412 Score: 99
Period size: 25 Copynumber: 2.6 Consensus size: 24
30340 GGTGGTGAAC
*
30350 GGTGAGCCTGGTGGTGAGCGCTGGT
1 GGTGAGCCTGGTGGTGAGC-CTAGT
*
30375 GGTGAGCCTAGTGGTGAGCCTAGT
1 GGTGAGCCTGGTGGTGAGCCTAGT
30399 GGTGAGCCTGGTGG
1 GGTGAGCCTGGTGG
30413 CTATTATGTG
Statistics
Matches: 35, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
24 17 0.49
25 18 0.51
ACGTcount: A:0.11, C:0.16, G:0.49, T:0.24
Consensus pattern (24 bp):
GGTGAGCCTGGTGGTGAGCCTAGT
Left flanking sequence: Indices 29850 -- 30349
CCACCACCCGCCGGGTGTGCTGGTAGGTCCGGAACTCCATCAAGTAGATCCCCTGCCAGGTGCCG
AGCGCCAATCGCCCGTTCTCGATCGGAATCGTAAGCGACACCCCCACCAACAGCGACTTGACGTG
GCCCGGCATGTCGTCGGGACCCTCGTCGTCGTGGATGTAAAAGTCGCCCTCGGGAGCCACCCGGT
CCATCAGCGCCGTCATGTCCTTGCGCACCGTCGGGTCACAGTTCTCGTTGAGCAGCAACGCCGCC
AGGGTGTGCTGCAAAAACAAGTTGACCAACCCCACCTTGTAGTCCTTGAGCGGAGGCAATTGCTT
CATGATCTCGTCGGTGACGAGGTACAGCCCCTTCTTGCGGGGAGCCAAGCTAAACTTCACCTGTT
GCCACGACATGGTTTTTCGCACAGCAAGGTCGGGTCGGTTGTAGCAAGTGGTGGTACACGTGATG
CGCGGGAGGCTGGTGGTGCGTTGGTGGTGAGCGCTGGTGGTGAAC
Right flanking sequence: Indices 30413 -- 30912
CTATTATGTGAGCGGTGGTTTGAGCGCTGGTGAGCTGGTGATAATAGAAGGTTGAGCTACTTAAT
AGAAGTTTGAGCTACTGATTGACGCTGATCGAAGGTTACCTAAACGGGTATAATTGGAGTTTAGC
TGTTGATCTTAGCGAACAATGCGTTAGTGACACTATAGGCTACCTCGAGGAGGATCAATTCACGG
ACTCTTTCGTGGAGTACTACTGCGGCTCCTATCACGTCTACTACTTAGGCTACCATCGTGGACCT
ACCATCTTGAACTACTTCAGCTCCTATCACTTCTACTACTTCATAGGCTACCATCGTGGACTACT
TCAGCTCCTATTTTGGACTACCACCTCGTAGGCTACCATCTCCTGAGCTAACCTGAGACACTGTC
CACAGTCTGTCACGCCAACACTCAAACCGGATGGGACTTCTTCCCATACCTACTACCTAGAATCT
CACTGTAATTCCTTGAATGAGCTTACACTACCACCATCTTCTCAC
Found at i:30479 original size:20 final size:20
Alignment explanation
Indices: 30454--30493 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
30444 GAGCTGGTGA
30454 TAATAGAAGGTTGAGCTACT
1 TAATAGAAGGTTGAGCTACT
*
30474 TAATAGAAGTTTGAGCTACT
1 TAATAGAAGGTTGAGCTACT
30494 GATTGACGCT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.35, C:0.10, G:0.23, T:0.33
Consensus pattern (20 bp):
TAATAGAAGGTTGAGCTACT
Left flanking sequence: Indices 29954 -- 30453
ACCCCCACCAACAGCGACTTGACGTGGCCCGGCATGTCGTCGGGACCCTCGTCGTCGTGGATGTA
AAAGTCGCCCTCGGGAGCCACCCGGTCCATCAGCGCCGTCATGTCCTTGCGCACCGTCGGGTCAC
AGTTCTCGTTGAGCAGCAACGCCGCCAGGGTGTGCTGCAAAAACAAGTTGACCAACCCCACCTTG
TAGTCCTTGAGCGGAGGCAATTGCTTCATGATCTCGTCGGTGACGAGGTACAGCCCCTTCTTGCG
GGGAGCCAAGCTAAACTTCACCTGTTGCCACGACATGGTTTTTCGCACAGCAAGGTCGGGTCGGT
TGTAGCAAGTGGTGGTACACGTGATGCGCGGGAGGCTGGTGGTGCGTTGGTGGTGAGCGCTGGTG
GTGAACGGTGAGCCTGGTGGTGAGCGCTGGTGGTGAGCCTAGTGGTGAGCCTAGTGGTGAGCCTG
GTGGCTATTATGTGAGCGGTGGTTTGAGCGCTGGTGAGCTGGTGA
Right flanking sequence: Indices 30494 -- 30993
GATTGACGCTGATCGAAGGTTACCTAAACGGGTATAATTGGAGTTTAGCTGTTGATCTTAGCGAA
CAATGCGTTAGTGACACTATAGGCTACCTCGAGGAGGATCAATTCACGGACTCTTTCGTGGAGTA
CTACTGCGGCTCCTATCACGTCTACTACTTAGGCTACCATCGTGGACCTACCATCTTGAACTACT
TCAGCTCCTATCACTTCTACTACTTCATAGGCTACCATCGTGGACTACTTCAGCTCCTATTTTGG
ACTACCACCTCGTAGGCTACCATCTCCTGAGCTAACCTGAGACACTGTCCACAGTCTGTCACGCC
AACACTCAAACCGGATGGGACTTCTTCCCATACCTACTACCTAGAATCTCACTGTAATTCCTTGA
ATGAGCTTACACTACCACCATCTTCTCACCAAAATCTCCTCATTCTTTCTTATTGTATCATTATT
TCATCTAGAGACTACTTAGAAGAGGATGAAAGAGACACCACCAGC
Found at i:30698 original size:25 final size:25
Alignment explanation
Indices: 30670--30747 Score: 68
Period size: 25 Copynumber: 3.2 Consensus size: 25
30660 CCATCGTGGA
30670 CCTACCATCTTGAACTACTTCAGCT
1 CCTACCATCTTGAACTACTTCAGCT
* ** ***
30695 CCTATCA-CTTCTACTACTTCATAG
1 CCTACCATCTTGAACTACTTCAGCT
* * *
30719 GCTACCATCGTGGACTACTTCAGCT
1 CCTACCATCTTGAACTACTTCAGCT
30744 CCTA
1 CCTA
30748 TTTTGGACTA
Statistics
Matches: 37, Mismatches: 15, Indels: 2
0.69 0.28 0.04
Matches are distributed among these distances:
24 17 0.46
25 20 0.54
ACGTcount: A:0.23, C:0.35, G:0.10, T:0.32
Consensus pattern (25 bp):
CCTACCATCTTGAACTACTTCAGCT
Left flanking sequence: Indices 30170 -- 30669
TGCTTCATGATCTCGTCGGTGACGAGGTACAGCCCCTTCTTGCGGGGAGCCAAGCTAAACTTCAC
CTGTTGCCACGACATGGTTTTTCGCACAGCAAGGTCGGGTCGGTTGTAGCAAGTGGTGGTACACG
TGATGCGCGGGAGGCTGGTGGTGCGTTGGTGGTGAGCGCTGGTGGTGAACGGTGAGCCTGGTGGT
GAGCGCTGGTGGTGAGCCTAGTGGTGAGCCTAGTGGTGAGCCTGGTGGCTATTATGTGAGCGGTG
GTTTGAGCGCTGGTGAGCTGGTGATAATAGAAGGTTGAGCTACTTAATAGAAGTTTGAGCTACTG
ATTGACGCTGATCGAAGGTTACCTAAACGGGTATAATTGGAGTTTAGCTGTTGATCTTAGCGAAC
AATGCGTTAGTGACACTATAGGCTACCTCGAGGAGGATCAATTCACGGACTCTTTCGTGGAGTAC
TACTGCGGCTCCTATCACGTCTACTACTTAGGCTACCATCGTGGA
Right flanking sequence: Indices 30748 -- 31247
TTTTGGACTACCACCTCGTAGGCTACCATCTCCTGAGCTAACCTGAGACACTGTCCACAGTCTGT
CACGCCAACACTCAAACCGGATGGGACTTCTTCCCATACCTACTACCTAGAATCTCACTGTAATT
CCTTGAATGAGCTTACACTACCACCATCTTCTCACCAAAATCTCCTCATTCTTTCTTATTGTATC
ATTATTTCATCTAGAGACTACTTAGAAGAGGATGAAAGAGACACCACCAGCAAAGGCAGTGACCA
AACCAGCCAAACCAAGAAGCTCGACCTTGCCCATGGAGCGGGTGGAACCAGCAGCACTCTTGTCC
TTGCCGGACTCCGAAGAGGAGGCCTGGGAGCCGTTGGAAGAAGAGCCCTCGGAGTCACCGCCACC
GCCGGTGGCAGAGCCGTCAGCGGTCTGCTTGGTGGCAGACTCAACCTTCTTGGAGCACTTGTCGT
CGGCCTTGGGCTTGACGGTCTGGGCAAGACCGTTCCAGTCACAGG
Found at i:33362 original size:16 final size:17
Alignment explanation
Indices: 33331--33369 Score: 62
Period size: 16 Copynumber: 2.4 Consensus size: 17
33321 GTGTAGAGGT
*
33331 GGTGGGTAGAAAGGTGG
1 GGTGGGCAGAAAGGTGG
33348 GGTGGGCAG-AAGGTGG
1 GGTGGGCAGAAAGGTGG
33364 GGTGGG
1 GGTGGG
33370 TGGTCACGGT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
16 13 0.62
17 8 0.38
ACGTcount: A:0.18, C:0.03, G:0.64, T:0.15
Consensus pattern (17 bp):
GGTGGGCAGAAAGGTGG
Left flanking sequence: Indices 32831 -- 33330
CGGGGCTGTGCGCCTGAAAAATATTGTGCAGGAGGTAAATAAACCACGACATCCGTCATTGCGCG
GCAGCTACAGGAGCCGGGGGGTTGCGGTGTGTATGTGGGCGTGTGGGCGGGAGCCGGTGTGGGTG
GCCGAGCGGGCTGCCCGAGCACCGGGCGCTTTTGCGCTGGCGGGGCTTGGTGCCCCTTGCCAGTC
GCGATTTTGCCTATTTGGGACGAACAACAACAGTGATCTGGCAACGAAGGTCGCGTCACCCGCGG
TGGCAGGTGGACACAGCCTAGCTGGCGTTTCTTTTGGGCCATTTGGGCCATTGACGGTTGCATTC
ATTACCCTTCCTGATCGGGGCAAATTGGTCGTGTCGCGGTCGCGGTGGCTGGGGGAAGCCCGAGC
GCGAGGCTACGTGTGGCGGTTAAAGACGTAGGGGTGTTGGTTAGGAGACCTGGTGAAGTGGTTTA
GAGGTGAAGGCGATGGAGTGGTGAGAAGGGCGTTGGTGTAGAGGT
Right flanking sequence: Indices 33370 -- 33869
TGGTCACGGTTGTTCTCGGGTGGGGCTGCTGGTCGTGTCTTGCTCGCAGCTCAGCCGAGTTCGGC
AGTTTCTTTTTATGGGCAGTTCCCGACACACCGGGCGTGTTTCAGCGAACAGTGGGGCGATAGTG
GGACAAAGAGGCTGTGAGTAGCCGAGCAGACGAGGACGTAGAGTGATAGGGTGGGGGAGCAGTGT
GTGGTAGAGGTGGTGGGGGTGGTGGTGGTGGAGTGGGTACTACGTGTAGGTGAGTAAACCTTCGC
ACCACGGCTCTTCCAGCTTCTGTTTCACACCCTGTTTCACGCCTCTGATTCGCTGTTTTGGAAAA
ATATTTCAAAATATGTACAATACGAGACTAGTAAACATAGTGCTGTCCATGGCGCAGGAAACGTA
AACAGACACCCCGAGCACCGGAGATGGTAGGAAATGTGACCCCCGGGCACACGCGTGGGGTGTTG
TGGCGAGCCGGCCGCGTGGACCTGCGGTGGGTGTGTCGTGATGCG
Found at i:37091 original size:16 final size:16
Alignment explanation
Indices: 37070--37110 Score: 66
Period size: 15 Copynumber: 2.6 Consensus size: 16
37060 GGAAAAGAGG
37070 GAAGGGGAAGGAGGGA
1 GAAGGGGAAGGAGGGA
*
37086 GAA-GGGAAGGAGGGG
1 GAAGGGGAAGGAGGGA
37101 GAAGGGGAAG
1 GAAGGGGAAG
37111 AAGGAAGAGG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 14 0.61
16 9 0.39
ACGTcount: A:0.37, C:0.00, G:0.63, T:0.00
Consensus pattern (16 bp):
GAAGGGGAAGGAGGGA
Left flanking sequence: Indices 36570 -- 37069
AGGCAAGGGCACGCCCGAACTTGGGCACGCGGGTGCGGTAGTGGATGCCGCCCTTGGTGTGGAAC
TCGAGCAGCCGGTCGTTCTGGAGGTGGACCAGCTTCGTCCAGTCGTGCGAGAGGATGGTGAAGTC
GACGTTCTCGGCGTCGGTGTGGCGCTCGAACTTGAGCGAGAGGTTTTCAAAGTCGTACACGTGGA
TCTGGGGCTTGTAGGTACCCGTGGCCATCGCGAACTGCCCGTCCGGCGTCACTCTGATCCGGTTC
AGTGCCTCGGAGAACTCGAAGTCCTGGAGGAGGTCCACGCGATTGCGGTAGTCCACGTCGTGTTT
GAGGTCACGTTTGCGCTTCTTGGCGATCCAGTCGGGAAGCGACCGGGCCACGTTGGTGCCAGAGA
TCTGGTACACCGAGATGTCCCCCGCGGTCGTTGATTTGAGCACCATGGCGATAAGATGAGATGGA
GCGGTTTTATGCGATGACCCGCGGGCTCGAAACGGGGAAAAGAGG
Right flanking sequence: Indices 37111 -- 37610
AAGGAAGAGGGAGGGGGAGAGAGGAAGGAGAAGGACAAGAGAAGAGGAAAGAGAGAAAAGTGATA
AGGGTGTGTGATGGGTGGGGTGGTGGTGGGGTTGTTTGGTAGTGGGCTTATTGAGTTTATAGCTT
TTAAGAGAAAATAGGTTTAGAAAAGCAAGTAGATAAAGCAAACGTTGTAATGTCATAGAACACAA
GGTGTTTGACAAACCAGAATGCTTTCATTTTTCATCCATGTGTGTCATTTTTGCCACTGGATACT
CATCTCTAGTCACGGTAAGGGTCCCATCTATATGCAGGACACGAACCTCATGGAAACATGGTCCC
AACGTAACGGTGTAAACGCGAGAAATCGAGGGTTCTGAGACCATAGTGTTGTTCAGAGGGCTAAC
AGAGACGACCAAGCGGTTTAGCTTAGCTCCAGACGCGTGGAAACGCGTGGAAAGTGGCACCTATA
TTTCCGTGCAACCACGGGTATATAGTGCTCAATACGACTCGTAAG
Found at i:37127 original size:20 final size:20
Alignment explanation
Indices: 37099--37137 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
37089 GGGAAGGAGG
37099 GGGAAGGGGA-AGAAGGAAGA
1 GGGAAGGGGAGAG-AGGAAGA
*
37119 GGGAGGGGGAGAGAGGAAG
1 GGGAAGGGGAGAGAGGAAG
37138 GAGAAGGACA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 15 0.88
21 2 0.12
ACGTcount: A:0.38, C:0.00, G:0.62, T:0.00
Consensus pattern (20 bp):
GGGAAGGGGAGAGAGGAAGA
Left flanking sequence: Indices 36599 -- 37098
CGGGTGCGGTAGTGGATGCCGCCCTTGGTGTGGAACTCGAGCAGCCGGTCGTTCTGGAGGTGGAC
CAGCTTCGTCCAGTCGTGCGAGAGGATGGTGAAGTCGACGTTCTCGGCGTCGGTGTGGCGCTCGA
ACTTGAGCGAGAGGTTTTCAAAGTCGTACACGTGGATCTGGGGCTTGTAGGTACCCGTGGCCATC
GCGAACTGCCCGTCCGGCGTCACTCTGATCCGGTTCAGTGCCTCGGAGAACTCGAAGTCCTGGAG
GAGGTCCACGCGATTGCGGTAGTCCACGTCGTGTTTGAGGTCACGTTTGCGCTTCTTGGCGATCC
AGTCGGGAAGCGACCGGGCCACGTTGGTGCCAGAGATCTGGTACACCGAGATGTCCCCCGCGGTC
GTTGATTTGAGCACCATGGCGATAAGATGAGATGGAGCGGTTTTATGCGATGACCCGCGGGCTCG
AAACGGGGAAAAGAGGGAAGGGGAAGGAGGGAGAAGGGAAGGAGG
Right flanking sequence: Indices 37138 -- 37637
GAGAAGGACAAGAGAAGAGGAAAGAGAGAAAAGTGATAAGGGTGTGTGATGGGTGGGGTGGTGGT
GGGGTTGTTTGGTAGTGGGCTTATTGAGTTTATAGCTTTTAAGAGAAAATAGGTTTAGAAAAGCA
AGTAGATAAAGCAAACGTTGTAATGTCATAGAACACAAGGTGTTTGACAAACCAGAATGCTTTCA
TTTTTCATCCATGTGTGTCATTTTTGCCACTGGATACTCATCTCTAGTCACGGTAAGGGTCCCAT
CTATATGCAGGACACGAACCTCATGGAAACATGGTCCCAACGTAACGGTGTAAACGCGAGAAATC
GAGGGTTCTGAGACCATAGTGTTGTTCAGAGGGCTAACAGAGACGACCAAGCGGTTTAGCTTAGC
TCCAGACGCGTGGAAACGCGTGGAAAGTGGCACCTATATTTCCGTGCAACCACGGGTATATAGTG
CTCAATACGACTCGTAAGCCGTAAAGCAACGAAGAACGCAGGCGT
Found at i:39353 original size:18 final size:18
Alignment explanation
Indices: 39330--39376 Score: 67
Period size: 18 Copynumber: 2.6 Consensus size: 18
39320 GGAGAACGAG
*
39330 GAGAACGAAGAGGAGAAC
1 GAGAACGAAGAGGAGAAA
* *
39348 GAGAACGAGGGGGAGAAA
1 GAGAACGAAGAGGAGAAA
39366 GAGAACGAAGA
1 GAGAACGAAGA
39377 AGACGAGAAC
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.49, C:0.09, G:0.43, T:0.00
Consensus pattern (18 bp):
GAGAACGAAGAGGAGAAA
Left flanking sequence: Indices 38830 -- 39329
AGCAGTTGTTGGACAACCTGAACCAGGTGCTCCGCAACTCGGTGGTGGAGGCGTGTGGCAACATC
GCAGTCGACATGCTCGCGCTGGACCGCGACGCCGACGACGCCGACCCCGCGGTGGACGGGCTTTT
GGACTTGCTCCAGGAGCGGGTGTGCGATCTGAACCCGTTTGTGCGGCTGAAGGCGTTCCAGGCGC
TCGCCAAGATCGTGGCGCTTCCGGTGAAGCTTCCCCAGCGGCGGTTGGCGCTCGTGGCGCTTGCG
GTGAGGCTGTTGGACGACAAGCTGACGTTTGTGCGGCGCCACGCCATCAAGCTCTTGGCGGCGCT
GATGCTCAACCACCAGTTCCTGCCGAGCCGGTTGGAGCTGGCGGTGTGGAAGGCGCGGTTGGAGG
CGGCGGAGAAGGAGTTTGACGAGCTCACGGGCGAGGTGGACGCGGCGCAGCGGGCGTTTTTGCAC
CAGGAGGGCGAGATGATGGACATAGACGAGGAGGGGGAGAACGAG
Right flanking sequence: Indices 39377 -- 39876
AGACGAGAACAGAAAGGATGAGAACGTAGAGGATGAGAACGTGGAGGACGGAGAGAACCAGGGGA
ACCAGCCGGAAGACGGCGACGAGCCCGTCCCGAACTCGAACCCGGTTCCCAACCCGCTCATGCTC
TTGCCCAACTACGAGGACATCATGCGGGCCAAGCTCCAGGTGCTGTACCTCACCGACGCGTGTGC
GTTCATTGACGCCATCCACGCCGCCATCACCGTGCTCGAACGGCTCCTTTTCTCGAAAAACAAGT
TGGAGACCCTCGAGGCGATGGACTTTTTGGTGCTCGCAGACGCCTACGGCATCAGCGCGGCTGCC
AACGGGATCCGCAAGATGCTCCACTTGGTGTGGTCCAAGGCCACCTCGGAGGAGGGGAAGCTGGT
GCCCGCCCACCTCATCGACTGCTACCGCGAGCTCTTTCTCCAGCCGCCGCCCGAGGTGGCTCTGG
CGGAGCAGGCGGCCTACGTGGCCAAGAACTTGATCCAGCTCACCG
Found at i:39379 original size:39 final size:38
Alignment explanation
Indices: 39315--39390 Score: 100
Period size: 39 Copynumber: 2.0 Consensus size: 38
39305 CATAGACGAG
* * *
39315 GAGGGGGAGAACGAGGAGAACGAAGAGGAGAACGAGAAC
1 GAGGGGGAGAAAGAGAAGAACGAAGACGAGAAC-AGAAC
39354 GAGGGGGAGAAAGAGAACGAA-GAAGACGAGAACAGAA
1 GAGGGGGAGAAAGAGAA-GAACGAAGACGAGAACAGAA
39391 AGGATGAGAA
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
38 4 0.12
39 26 0.79
40 3 0.09
ACGTcount: A:0.47, C:0.09, G:0.43, T:0.00
Consensus pattern (38 bp):
GAGGGGGAGAAAGAGAAGAACGAAGACGAGAACAGAAC
Left flanking sequence: Indices 38815 -- 39314
AGTTGGCCGCCGTCAAGCAGTTGTTGGACAACCTGAACCAGGTGCTCCGCAACTCGGTGGTGGAG
GCGTGTGGCAACATCGCAGTCGACATGCTCGCGCTGGACCGCGACGCCGACGACGCCGACCCCGC
GGTGGACGGGCTTTTGGACTTGCTCCAGGAGCGGGTGTGCGATCTGAACCCGTTTGTGCGGCTGA
AGGCGTTCCAGGCGCTCGCCAAGATCGTGGCGCTTCCGGTGAAGCTTCCCCAGCGGCGGTTGGCG
CTCGTGGCGCTTGCGGTGAGGCTGTTGGACGACAAGCTGACGTTTGTGCGGCGCCACGCCATCAA
GCTCTTGGCGGCGCTGATGCTCAACCACCAGTTCCTGCCGAGCCGGTTGGAGCTGGCGGTGTGGA
AGGCGCGGTTGGAGGCGGCGGAGAAGGAGTTTGACGAGCTCACGGGCGAGGTGGACGCGGCGCAG
CGGGCGTTTTTGCACCAGGAGGGCGAGATGATGGACATAGACGAG
Right flanking sequence: Indices 39391 -- 39890
AGGATGAGAACGTAGAGGATGAGAACGTGGAGGACGGAGAGAACCAGGGGAACCAGCCGGAAGAC
GGCGACGAGCCCGTCCCGAACTCGAACCCGGTTCCCAACCCGCTCATGCTCTTGCCCAACTACGA
GGACATCATGCGGGCCAAGCTCCAGGTGCTGTACCTCACCGACGCGTGTGCGTTCATTGACGCCA
TCCACGCCGCCATCACCGTGCTCGAACGGCTCCTTTTCTCGAAAAACAAGTTGGAGACCCTCGAG
GCGATGGACTTTTTGGTGCTCGCAGACGCCTACGGCATCAGCGCGGCTGCCAACGGGATCCGCAA
GATGCTCCACTTGGTGTGGTCCAAGGCCACCTCGGAGGAGGGGAAGCTGGTGCCCGCCCACCTCA
TCGACTGCTACCGCGAGCTCTTTCTCCAGCCGCCGCCCGAGGTGGCTCTGGCGGAGCAGGCGGCC
TACGTGGCCAAGAACTTGATCCAGCTCACCGAGGGCGCGCTGGCG
Found at i:39386 original size:15 final size:15
Alignment explanation
Indices: 39366--39417 Score: 61
Period size: 15 Copynumber: 3.5 Consensus size: 15
39356 GGGGGAGAAA
* *
39366 GAGAACGAAGAAGAC
1 GAGAACGAAGAGGAT
39381 GAGAACAGAA-AGGAT
1 GAGAAC-GAAGAGGAT
*
39396 GAGAACGTAGAGGAT
1 GAGAACGAAGAGGAT
39411 GAGAACG
1 GAGAACG
39418 TGGAGGACGG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
14 2 0.06
15 27 0.84
16 3 0.09
ACGTcount: A:0.48, C:0.10, G:0.37, T:0.06
Consensus pattern (15 bp):
GAGAACGAAGAGGAT
Left flanking sequence: Indices 38866 -- 39365
ACTCGGTGGTGGAGGCGTGTGGCAACATCGCAGTCGACATGCTCGCGCTGGACCGCGACGCCGAC
GACGCCGACCCCGCGGTGGACGGGCTTTTGGACTTGCTCCAGGAGCGGGTGTGCGATCTGAACCC
GTTTGTGCGGCTGAAGGCGTTCCAGGCGCTCGCCAAGATCGTGGCGCTTCCGGTGAAGCTTCCCC
AGCGGCGGTTGGCGCTCGTGGCGCTTGCGGTGAGGCTGTTGGACGACAAGCTGACGTTTGTGCGG
CGCCACGCCATCAAGCTCTTGGCGGCGCTGATGCTCAACCACCAGTTCCTGCCGAGCCGGTTGGA
GCTGGCGGTGTGGAAGGCGCGGTTGGAGGCGGCGGAGAAGGAGTTTGACGAGCTCACGGGCGAGG
TGGACGCGGCGCAGCGGGCGTTTTTGCACCAGGAGGGCGAGATGATGGACATAGACGAGGAGGGG
GAGAACGAGGAGAACGAAGAGGAGAACGAGAACGAGGGGGAGAAA
Right flanking sequence: Indices 39418 -- 39917
TGGAGGACGGAGAGAACCAGGGGAACCAGCCGGAAGACGGCGACGAGCCCGTCCCGAACTCGAAC
CCGGTTCCCAACCCGCTCATGCTCTTGCCCAACTACGAGGACATCATGCGGGCCAAGCTCCAGGT
GCTGTACCTCACCGACGCGTGTGCGTTCATTGACGCCATCCACGCCGCCATCACCGTGCTCGAAC
GGCTCCTTTTCTCGAAAAACAAGTTGGAGACCCTCGAGGCGATGGACTTTTTGGTGCTCGCAGAC
GCCTACGGCATCAGCGCGGCTGCCAACGGGATCCGCAAGATGCTCCACTTGGTGTGGTCCAAGGC
CACCTCGGAGGAGGGGAAGCTGGTGCCCGCCCACCTCATCGACTGCTACCGCGAGCTCTTTCTCC
AGCCGCCGCCCGAGGTGGCTCTGGCGGAGCAGGCGGCCTACGTGGCCAAGAACTTGATCCAGCTC
ACCGAGGGCGCGCTGGCGCTGGACTTGGCGTCGCTCGAGAAGCTC
Found at i:39418 original size:15 final size:15
Alignment explanation
Indices: 39391--39424 Score: 59
Period size: 15 Copynumber: 2.3 Consensus size: 15
39381 GAGAACAGAA
39391 AGGATGAGAACGTAG
1 AGGATGAGAACGTAG
*
39406 AGGATGAGAACGTGG
1 AGGATGAGAACGTAG
39421 AGGA
1 AGGA
39425 CGGAGAGAAC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.38, C:0.06, G:0.44, T:0.12
Consensus pattern (15 bp):
AGGATGAGAACGTAG
Left flanking sequence: Indices 38891 -- 39390
CATCGCAGTCGACATGCTCGCGCTGGACCGCGACGCCGACGACGCCGACCCCGCGGTGGACGGGC
TTTTGGACTTGCTCCAGGAGCGGGTGTGCGATCTGAACCCGTTTGTGCGGCTGAAGGCGTTCCAG
GCGCTCGCCAAGATCGTGGCGCTTCCGGTGAAGCTTCCCCAGCGGCGGTTGGCGCTCGTGGCGCT
TGCGGTGAGGCTGTTGGACGACAAGCTGACGTTTGTGCGGCGCCACGCCATCAAGCTCTTGGCGG
CGCTGATGCTCAACCACCAGTTCCTGCCGAGCCGGTTGGAGCTGGCGGTGTGGAAGGCGCGGTTG
GAGGCGGCGGAGAAGGAGTTTGACGAGCTCACGGGCGAGGTGGACGCGGCGCAGCGGGCGTTTTT
GCACCAGGAGGGCGAGATGATGGACATAGACGAGGAGGGGGAGAACGAGGAGAACGAAGAGGAGA
ACGAGAACGAGGGGGAGAAAGAGAACGAAGAAGACGAGAACAGAA
Right flanking sequence: Indices 39425 -- 39924
CGGAGAGAACCAGGGGAACCAGCCGGAAGACGGCGACGAGCCCGTCCCGAACTCGAACCCGGTTC
CCAACCCGCTCATGCTCTTGCCCAACTACGAGGACATCATGCGGGCCAAGCTCCAGGTGCTGTAC
CTCACCGACGCGTGTGCGTTCATTGACGCCATCCACGCCGCCATCACCGTGCTCGAACGGCTCCT
TTTCTCGAAAAACAAGTTGGAGACCCTCGAGGCGATGGACTTTTTGGTGCTCGCAGACGCCTACG
GCATCAGCGCGGCTGCCAACGGGATCCGCAAGATGCTCCACTTGGTGTGGTCCAAGGCCACCTCG
GAGGAGGGGAAGCTGGTGCCCGCCCACCTCATCGACTGCTACCGCGAGCTCTTTCTCCAGCCGCC
GCCCGAGGTGGCTCTGGCGGAGCAGGCGGCCTACGTGGCCAAGAACTTGATCCAGCTCACCGAGG
GCGCGCTGGCGCTGGACTTGGCGTCGCTCGAGAAGCTCTTGGGGA
Found at i:43067 original size:21 final size:21
Alignment explanation
Indices: 43041--43084 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
43031 AGTTATCGTT
*
43041 GTCGTTGCTGTCGTTGCTGTC
1 GTCGTTGCCGTCGTTGCTGTC
*
43062 GTCGTTGCCGTCGTTGTTGTC
1 GTCGTTGCCGTCGTTGCTGTC
43083 GT
1 GT
43085 TGTCGTCGTT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.00, C:0.23, G:0.34, T:0.43
Consensus pattern (21 bp):
GTCGTTGCCGTCGTTGCTGTC
Left flanking sequence: Indices 42541 -- 43040
TGTGCGGCTGAACAGAGAAGCCATGCTAAAGACGCAGCCAGATCTCCAGAGGGACCCAAGACAAT
CAAACTCAGTTGTTTCGTCGATCAACGCTTGATAGTTTGCCTTTAATTACACTAGTTATATTTCG
ACAATAGCTGCTCTCCAACTTTTCTTGGCTTTGGTTGCCTTTAAGGTTTCACAAAACCGAAGTGT
GACCTATTGTTCCGGCAAATGCAGGGGTTTGGCCGGATTAGTTAGTCCAAGTCCGTGAGCTAAGC
CTTCCATGTCACAGCAGATCGCATGGGATTTGCAGCCACTAAATCTGGGACAAAAGCTAGGTACT
ACCAGAAAAGCTAACCAATTGGAATTTTGTCGCTGGCCCTACTCACCTGAACTTTACAATCATCA
TAAATTCAATATGTCAAGGATTACAACAAATAGAGTCCAGCTCCAATAGCGGCGGCACCGTACAC
TAGCCCAGCGACCGAGTTGACACCAGCACCGTTAGAGTTATCGTT
Right flanking sequence: Indices 43085 -- 43584
TGTCGTCGTTATCATTTCCATCATCACCCTCATTATCCTCGGTCTCTTCCCTGTCCACAGGGTTT
GTGGCCTCAACCTGGTCCTCGAGTCCCAACGCAGAAGCGAACGAGGGGTCCAAACTAGTTGCAGT
AATCGAGTCAAAGGGCACGCTACCGGAGAAGTAGCTGTACATCTGACTATAGTACAGCATCATCG
CACCTGTGTAAGCAGTGTCCAGCCCGGAAACCATGCCGACAAATTGCTCGAGATTCTCGGGGTCA
ATGGTGATATAGGTGGTACCGTCCTCGACCTTGATGGGTTCAGCACAGAAAACAACGGGTAAGAG
TAGCAAGTAGGAAAGCATGGTGGAGTCGAGGAAGAGGAAACACGGCCTTATATAGCTCTCGCCAG
CTCAATCAGGGAGGCGAGTTACGTCATGAGACAGTCGCTTGGAGCATTGGTACGGATTGAAAGAA
AGGGTTTTGTGGGGTTGAGAGAAAGGTTGCACGAACTGCCAACGC
Found at i:43087 original size:9 final size:9
Alignment explanation
Indices: 43038--43094 Score: 51
Period size: 9 Copynumber: 6.0 Consensus size: 9
43028 TAGAGTTATC
43038 GTTGTCGTT
1 GTTGTCGTT
*
43047 GCTGTCGTT
1 GTTGTCGTT
43056 GCTGTCGTCGTT
1 G-T-T-GTCGTT
**
43068 GCCGTCGTT
1 GTTGTCGTT
43077 GTTGTCGTT
1 GTTGTCGTT
*
43086 GTCGTCGTT
1 GTTGTCGTT
43095 ATCATTTCCA
Statistics
Matches: 38, Mismatches: 7, Indels: 6
0.75 0.14 0.12
Matches are distributed among these distances:
9 30 0.79
11 1 0.03
12 7 0.18
ACGTcount: A:0.00, C:0.21, G:0.33, T:0.46
Consensus pattern (9 bp):
GTTGTCGTT
Left flanking sequence: Indices 42538 -- 43037
TAATGTGCGGCTGAACAGAGAAGCCATGCTAAAGACGCAGCCAGATCTCCAGAGGGACCCAAGAC
AATCAAACTCAGTTGTTTCGTCGATCAACGCTTGATAGTTTGCCTTTAATTACACTAGTTATATT
TCGACAATAGCTGCTCTCCAACTTTTCTTGGCTTTGGTTGCCTTTAAGGTTTCACAAAACCGAAG
TGTGACCTATTGTTCCGGCAAATGCAGGGGTTTGGCCGGATTAGTTAGTCCAAGTCCGTGAGCTA
AGCCTTCCATGTCACAGCAGATCGCATGGGATTTGCAGCCACTAAATCTGGGACAAAAGCTAGGT
ACTACCAGAAAAGCTAACCAATTGGAATTTTGTCGCTGGCCCTACTCACCTGAACTTTACAATCA
TCATAAATTCAATATGTCAAGGATTACAACAAATAGAGTCCAGCTCCAATAGCGGCGGCACCGTA
CACTAGCCCAGCGACCGAGTTGACACCAGCACCGTTAGAGTTATC
Right flanking sequence: Indices 43095 -- 43594
ATCATTTCCATCATCACCCTCATTATCCTCGGTCTCTTCCCTGTCCACAGGGTTTGTGGCCTCAA
CCTGGTCCTCGAGTCCCAACGCAGAAGCGAACGAGGGGTCCAAACTAGTTGCAGTAATCGAGTCA
AAGGGCACGCTACCGGAGAAGTAGCTGTACATCTGACTATAGTACAGCATCATCGCACCTGTGTA
AGCAGTGTCCAGCCCGGAAACCATGCCGACAAATTGCTCGAGATTCTCGGGGTCAATGGTGATAT
AGGTGGTACCGTCCTCGACCTTGATGGGTTCAGCACAGAAAACAACGGGTAAGAGTAGCAAGTAG
GAAAGCATGGTGGAGTCGAGGAAGAGGAAACACGGCCTTATATAGCTCTCGCCAGCTCAATCAGG
GAGGCGAGTTACGTCATGAGACAGTCGCTTGGAGCATTGGTACGGATTGAAAGAAAGGGTTTTGT
GGGGTTGAGAGAAAGGTTGCACGAACTGCCAACGCAAAAGGCAAC
Found at i:43091 original size:18 final size:17
Alignment explanation
Indices: 43038--43094 Score: 60
Period size: 18 Copynumber: 3.0 Consensus size: 17
43028 TAGAGTTATC
43038 GTTGTCGTTGCTGTCGTT
1 GTTGTCGTTGC-GTCGTT
43056 GCTGTCGTCGTTGCCGTCGTT
1 G-T-T-GTCGTTG-CGTCGTT
43077 GTTGTCGTTGTCGTCGTT
1 GTTGTCGTTG-CGTCGTT
43095 ATCATTTCCA
Statistics
Matches: 34, Mismatches: 1, Indels: 8
0.79 0.02 0.19
Matches are distributed among these distances:
18 15 0.44
19 2 0.06
20 2 0.06
21 14 0.41
22 1 0.03
ACGTcount: A:0.00, C:0.21, G:0.33, T:0.46
Consensus pattern (17 bp):
GTTGTCGTTGCGTCGTT
Left flanking sequence: Indices 42538 -- 43037
TAATGTGCGGCTGAACAGAGAAGCCATGCTAAAGACGCAGCCAGATCTCCAGAGGGACCCAAGAC
AATCAAACTCAGTTGTTTCGTCGATCAACGCTTGATAGTTTGCCTTTAATTACACTAGTTATATT
TCGACAATAGCTGCTCTCCAACTTTTCTTGGCTTTGGTTGCCTTTAAGGTTTCACAAAACCGAAG
TGTGACCTATTGTTCCGGCAAATGCAGGGGTTTGGCCGGATTAGTTAGTCCAAGTCCGTGAGCTA
AGCCTTCCATGTCACAGCAGATCGCATGGGATTTGCAGCCACTAAATCTGGGACAAAAGCTAGGT
ACTACCAGAAAAGCTAACCAATTGGAATTTTGTCGCTGGCCCTACTCACCTGAACTTTACAATCA
TCATAAATTCAATATGTCAAGGATTACAACAAATAGAGTCCAGCTCCAATAGCGGCGGCACCGTA
CACTAGCCCAGCGACCGAGTTGACACCAGCACCGTTAGAGTTATC
Right flanking sequence: Indices 43095 -- 43594
ATCATTTCCATCATCACCCTCATTATCCTCGGTCTCTTCCCTGTCCACAGGGTTTGTGGCCTCAA
CCTGGTCCTCGAGTCCCAACGCAGAAGCGAACGAGGGGTCCAAACTAGTTGCAGTAATCGAGTCA
AAGGGCACGCTACCGGAGAAGTAGCTGTACATCTGACTATAGTACAGCATCATCGCACCTGTGTA
AGCAGTGTCCAGCCCGGAAACCATGCCGACAAATTGCTCGAGATTCTCGGGGTCAATGGTGATAT
AGGTGGTACCGTCCTCGACCTTGATGGGTTCAGCACAGAAAACAACGGGTAAGAGTAGCAAGTAG
GAAAGCATGGTGGAGTCGAGGAAGAGGAAACACGGCCTTATATAGCTCTCGCCAGCTCAATCAGG
GAGGCGAGTTACGTCATGAGACAGTCGCTTGGAGCATTGGTACGGATTGAAAGAAAGGGTTTTGT
GGGGTTGAGAGAAAGGTTGCACGAACTGCCAACGCAAAAGGCAAC
Found at i:46138 original size:30 final size:32
Alignment explanation
Indices: 46095--46163 Score: 81
Period size: 33 Copynumber: 2.2 Consensus size: 32
46085 TCCGGGTCCC
*
46095 CCGCCCGAGTTCGAC-G-CTCCGCTGGGACCG
1 CCGCCCGACTTCGACGGCCTCCGCTGGGACCG
* *
46125 CCGCCTGACTTCGACGGGCCTCCGCTGGGCCCG
1 CCGCCCGACTTCGAC-GGCCTCCGCTGGGACCG
46158 CC-CCCG
1 CCGCCCG
46164 GAGTTCAGTG
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
30 13 0.41
32 4 0.12
33 15 0.47
ACGTcount: A:0.07, C:0.48, G:0.32, T:0.13
Consensus pattern (32 bp):
CCGCCCGACTTCGACGGCCTCCGCTGGGACCG
Left flanking sequence: Indices 45595 -- 46094
TTGACGAGGCGTTTGTGCCCAAGGGCTACCAGCAGGTGTTTTCGGAGACCCAGATCCAGTACCGC
CTGGTGGTGGGCAAGGAGTACGGGGTGTGCAAGTGCAACTTCTGTGTGGCTGAGCGCCACGGGAT
GCTCGACTCGCTCGAGGGGGCCATGGAGAACATGTCGATGAACCCGAAGGGCCACCCGGAGAAGG
GCGGGCACCACGGGCAGGCAGGCCACCAGGGAGGCTACGAGAAGAGTGGCCAGGCCCCTGGGTAC
GAGAAGAGCGGCCACCAGGCCCCGGGCTACCACCAGGGCGGGTTTGACTCGACGCTCTCGGAGAA
GGAGCGCATGAAACGCCACTACGAGCAACAGCAGGGCGACTTCAAGCCTCCTGGAGGCGCGCCTC
CGGGCCACCTGGATGCCCCACCGCCCTCAGGCCCGCCTCCCGAGTTCAGTGCGCCGTCGGGCCCA
CCGCCCGACATGGACTCTAAGGGTGGAGCTCCGCCTCCGGGTCCC
Right flanking sequence: Indices 46164 -- 46663
GAGTTCAGTGCTCCTCCGGGCCCGCCTCCGGAGAAGGACTTTGCTCCGCCTCCCGGGCCGCCTCC
CGGGACCGAGTCGTCGTCGTCGTTTGCTCCGCCTCCAGGCCCGCCTCCAGGGGTGAGCTCTGTGC
GAGGGGCTCCTGCGCTTCCGCCTGGGTACGCCAACGTCGGTGGCCAGCTGGGCGGGTGGCTCCAG
CTCTCGCTGTCGTACCCGCACAAGTGCGACGTGTCGCTGCCCAACCGGTGTGAGTGTAGAGGTAC
TACGGGCTGTGGCGGTGGTGCTCCGTCGTGTAGAGCTGGTAAGTTGACTCTTGGCGAGGAGAAGC
TCAGCTGGTTCCACCGGATGAGACGATAAATAGAAAATGAAACGAGAGAACGATTAGAGAGTGAA
AACTGAGGAACGGTCTTTGAAAATGAGTTTGCTCTGTGAAGGGCAACTGAAGGTAGCCCAAATGG
TGATTATCGTTGACTTCTAAATCTCATTTGTGGGTGTCTTCCACA
Found at i:46834 original size:22 final size:22
Alignment explanation
Indices: 46809--46851 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
46799 TGGTGATCTA
46809 TAACAATCTCCTGTGTGACCTG
1 TAACAATCTCCTGTGTGACCTG
46831 TAACAATCTCCTGTGTGACCT
1 TAACAATCTCCTGTGTGACCT
46852 AAACAGCTCT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.23, C:0.28, G:0.16, T:0.33
Consensus pattern (22 bp):
TAACAATCTCCTGTGTGACCTG
Left flanking sequence: Indices 46309 -- 46808
TTCCGCCTGGGTACGCCAACGTCGGTGGCCAGCTGGGCGGGTGGCTCCAGCTCTCGCTGTCGTAC
CCGCACAAGTGCGACGTGTCGCTGCCCAACCGGTGTGAGTGTAGAGGTACTACGGGCTGTGGCGG
TGGTGCTCCGTCGTGTAGAGCTGGTAAGTTGACTCTTGGCGAGGAGAAGCTCAGCTGGTTCCACC
GGATGAGACGATAAATAGAAAATGAAACGAGAGAACGATTAGAGAGTGAAAACTGAGGAACGGTC
TTTGAAAATGAGTTTGCTCTGTGAAGGGCAACTGAAGGTAGCCCAAATGGTGATTATCGTTGACT
TCTAAATCTCATTTGTGGGTGTCTTCCACATGGGATGCTTGAACAAGCCTGTGAATATATCTCTT
AATGACAAATCACCCATACAACTGGAGAATGATTTCCGAGGATCGTAAACAGAGTTGATTTAGAA
CATGCCTGAATTATGCACAATGTCACTCGTGCATTTGGTGATCTA
Right flanking sequence: Indices 46852 -- 47351
AAACAGCTCTCCACACCATACTTTATGCATTTATTGAACAATCAATGTTTTACGTAGTCGTCTAC
TCATGCTACCGGTCGCCAGCGACTCATGTAAACTGCTCTCCGCCCGAGAACAACTGCACAATACA
CTGGTAGAACGGCTCCCGGTGCACCACCTGGTCGAAATTGAACTCAGCAACGCGGTTGGGGAATG
CCCGTTTCAACCAGTACACCAACCGGTCGCGCTCAAGGGTAAACTTGCCCGGGAACTCCTTGTAG
CAGGCAGCCCGCTCCTTGTACTTGGAGATGAAGCTCAACACCAGCTGGCCCGACCGCGGCTTGGT
CCCGAGCCACACTTGCATGTGGTGCAAGTCCTCGTCGTAGAAGTGCTTGTACCGGAACAAGTACT
CAATGAACTCGGGCCACAGGGGCAGCAGCTCGAGCCCCTGGCGCATCACGTCGCCAAGGTAGCCG
GTTCCGTAGAAGCCCCAGTAGTGGAACGGGACCTGGGCTGCCATG
Found at i:46863 original size:22 final size:22
Alignment explanation
Indices: 46810--46856 Score: 78
Period size: 22 Copynumber: 2.2 Consensus size: 22
46800 GGTGATCTAT
*
46810 AACAATCTCCTGTGTGACCTGT
1 AACAATCTCCTGTGTGACCTGA
46832 AACAATCTCCTGTGTGACCT-A
1 AACAATCTCCTGTGTGACCTGA
46853 AACA
1 AACA
46857 GCTCTCCACA
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 4 0.17
22 20 0.83
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.28
Consensus pattern (22 bp):
AACAATCTCCTGTGTGACCTGA
Left flanking sequence: Indices 46310 -- 46809
TCCGCCTGGGTACGCCAACGTCGGTGGCCAGCTGGGCGGGTGGCTCCAGCTCTCGCTGTCGTACC
CGCACAAGTGCGACGTGTCGCTGCCCAACCGGTGTGAGTGTAGAGGTACTACGGGCTGTGGCGGT
GGTGCTCCGTCGTGTAGAGCTGGTAAGTTGACTCTTGGCGAGGAGAAGCTCAGCTGGTTCCACCG
GATGAGACGATAAATAGAAAATGAAACGAGAGAACGATTAGAGAGTGAAAACTGAGGAACGGTCT
TTGAAAATGAGTTTGCTCTGTGAAGGGCAACTGAAGGTAGCCCAAATGGTGATTATCGTTGACTT
CTAAATCTCATTTGTGGGTGTCTTCCACATGGGATGCTTGAACAAGCCTGTGAATATATCTCTTA
ATGACAAATCACCCATACAACTGGAGAATGATTTCCGAGGATCGTAAACAGAGTTGATTTAGAAC
ATGCCTGAATTATGCACAATGTCACTCGTGCATTTGGTGATCTAT
Right flanking sequence: Indices 46857 -- 47356
GCTCTCCACACCATACTTTATGCATTTATTGAACAATCAATGTTTTACGTAGTCGTCTACTCATG
CTACCGGTCGCCAGCGACTCATGTAAACTGCTCTCCGCCCGAGAACAACTGCACAATACACTGGT
AGAACGGCTCCCGGTGCACCACCTGGTCGAAATTGAACTCAGCAACGCGGTTGGGGAATGCCCGT
TTCAACCAGTACACCAACCGGTCGCGCTCAAGGGTAAACTTGCCCGGGAACTCCTTGTAGCAGGC
AGCCCGCTCCTTGTACTTGGAGATGAAGCTCAACACCAGCTGGCCCGACCGCGGCTTGGTCCCGA
GCCACACTTGCATGTGGTGCAAGTCCTCGTCGTAGAAGTGCTTGTACCGGAACAAGTACTCAATG
AACTCGGGCCACAGGGGCAGCAGCTCGAGCCCCTGGCGCATCACGTCGCCAAGGTAGCCGGTTCC
GTAGAAGCCCCAGTAGTGGAACGGGACCTGGGCTGCCATGAACAA
Found at i:48119 original size:20 final size:20
Alignment explanation
Indices: 48102--48146 Score: 81
Period size: 20 Copynumber: 2.2 Consensus size: 20
48092 ACACGAGGTA
48102 ACCGGAGGTAATGGGAGGCT
1 ACCGGAGGTAATGGGAGGCT
*
48122 ACCGGAGGTAATGGGAGGAT
1 ACCGGAGGTAATGGGAGGCT
48142 ACCGG
1 ACCGG
48147 TGAAACTGGA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.27, C:0.16, G:0.44, T:0.13
Consensus pattern (20 bp):
ACCGGAGGTAATGGGAGGCT
Left flanking sequence: Indices 47602 -- 48101
TGTCCTGTTTTAGCAACCGGATCACGTCCTGCGAGTCCGCTGAGTGCGGTCCTCCGCTGCTGGAG
AGCGAACTGCCCCCGTTAAGCACGCTCATCCGGAGCTGGGGGGTCAGTTGGAGCAGCAAATGGGT
GCTGTGGTGGCTGCGAGCGAGGGTGGTGGTGGTGCCATTGGCGGGGGTGTTGGCGACGGCGCGCT
TTAGAAGCACGATTTCATCTTGTTGAGCACAGAGGAGCTGTTCAAGGGCCTCTACACGCTTGGCA
AGCAGGGCAGACAGCTCCAGAGGAGGGGAGTGGGTTGCGGTGGGCAACTGGTCGATGGCTGGGAG
TGGTAACAGACCCTGGCCCAGGCGGGTTTGGTCGGGAATGAGCGTGGCCTTCATGGCACGCTCGG
ACTGGGTGATGGTGGCCACGGTGGGTGGGGTGTCCTTGGAAGTGCCAAATAGGGTCCCTGTGGTG
TTCTAGGAGGGTTACCTGAGGGAGTGGTCAAGGTGACACGAGGTA
Right flanking sequence: Indices 48147 -- 48646
TGAAACTGGAAGATACGTGGATCACCAAAGGAACAACCGGAGAAAACGGTTCGGATGGAAAGTGA
CCCGAGATCAGACAAGCAAGGATCCTGGCACAAAGAGTGAGGTGACCGGAGAACTCCTAGAAACC
GGATCTGTCGGGAACAGCGGTGACGATCCTGAGTGAGGTGACTTCAGGAGCACAAAGCTACTCGG
TTGGCGGGTCCGTGGAGGGGTGGAATCAATAGCGAACACCGAGATGGGACTTTTCACAAGAGCCT
CAGCAAAACGCGTAGGAAAACCGATCTGGCGTGGAATCTGAGTCGTCTGAACACAAGGGCCTGAT
CGGGTGATCGGAAAGGACAAGCACCACGGTCACGGGGGGAGGTGGAATCGACGCGAGAACCTAGC
ACGTAAAACGAGCAATAAGAAAACCTCTACGGTGCGCACGACTGCCTCGGCGTTCATGCACTCTA
GATGGGGTGTAGCCACGTCCACGCGGTAGCTTAGCGACTGATTAT
Found at i:66852 original size:11 final size:11
Alignment explanation
Indices: 66836--66860 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
66826 TCCTCGATCT
66836 ACCTTCAATAC
1 ACCTTCAATAC
66847 ACCTTCAATAC
1 ACCTTCAATAC
66858 ACC
1 ACC
66861 CTTTTTACCT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.36, C:0.40, G:0.00, T:0.24
Consensus pattern (11 bp):
ACCTTCAATAC
Left flanking sequence: Indices 66336 -- 66835
GAGAAGAAGATTGGGGCGATTGTCGATGCTATTCGCGATCCCGAGAGGTTGTGGACCCCCTACGG
GATCCGGTCGCTCAGTAAGCTGGACCCCTACTACGCTACCGGCGAGAACTACTGGCGCAGTCCCA
TCTGGGTCCAGATGAACTACTTGGTTCTTGACGGGTTGCGCCACTACTACCCCCACGTTGAGCTG
CCCAAGCTCAAGAAGAAGATGGCTCGCACCTACGCCAGCCTCCGTGAGAACGTGGTGGGCAACGT
GTACCAGCAGTGGCAGAAGACCGGGTTTGTGTGGGAGCAGTACGATGACACCACAGGCGAGCACA
AGGGCGCGAAGAACTTCCTCGGGTGGACGTCGTCGGTGGTGATGATGATGGAGATGCCGCAGAAG
TTGACTTAGATGATAGATTGTTAGATACAAACACAATAGAACAGGAAGAACCTTAGAAATATTTG
ATTACGTAAATCTACCTTTTATCTGCCTTCGATCTTCCTCGATCT
Right flanking sequence: Indices 66861 -- 67360
CTTTTTACCTTCGTTCCTCATAACGTCTCATTAGTATAAATACATACCTATTCCTCCTTTTCCTC
GTCGTCGCCCAAAAGGTTCTCCAAGATGTCAGCGTACTTGCCGTTGGTGGCATTGTTGGCCCGCT
TCAAGATCGCCTCGGCCTCCTTGTACTGCTCCTCCTGCTCGGCAGAGTCCAACTCGTACATGTTC
CCCAACGAAATCATCGCCTCGGCCCGGGTCACCCAGGTGTCGGGCTCCTCCTCCTCGACCGCCCA
CGCCAAGTACTTGAGGGCGGTCTTCAACAGCTCCTGCGCCAACCGCTGGGCCTGTTCCTGAGTCA
AACCCGACAACTCACGGGTGTCCTTGTGGTCGTCGTCGTACTTGAGAGTGGTGTACACCGACTGG
GGCACCTCGGCCTCCTGGAGGTACGACTGACCAAGCAACCCAGCGAGCTTGCGGCGCAACGCCAA
CTGCTCGGGGTGGGCCTTGGCCTGCTCCTCCGTCGGCTCCTCGCC
Found at i:74792 original size:24 final size:23
Alignment explanation
Indices: 74748--74793 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 23
74738 TCCTTTTTCG
*
74748 TCAAAGTGGGGTAGAGCTTTGGT
1 TCAAAGTGGGGTAGAGATTTGGT
74771 TCAAAGGTGGGG-AGAAGATTTGG
1 TCAAA-GTGGGGTAG-AGATTTGG
74794 GGGTTGCAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
23 7 0.35
24 13 0.65
ACGTcount: A:0.26, C:0.07, G:0.41, T:0.26
Consensus pattern (23 bp):
TCAAAGTGGGGTAGAGATTTGGT
Left flanking sequence: Indices 74248 -- 74747
GGTTTTGCGATTTACCGAAAGCTCCTACACTCCGGAGACTCCGTAGTTAGTCATTTCCAACACAA
ACCTTTCTTTGTGACCTACCCCAGGATGGTCTGATAATACGTCATACGGTTGAAGCTTAAGTGCC
ACACGGCTCGAAACAGAAATAATACACGGAGAATGAGCCACGGGGTAGCACCTACCGCCGAGACG
CGTGATTTCACGGGGTCACCCTACTTTTGCCGGTGTGGGGGTCACCCGGAGCAGCCACACGTGGA
TTCTGATTGTCAACCCCACCTTCTGCATCAGTTGTTATTGTGACGTTGGGTCGAGCTCGAAAATG
GGGTTGCAGTAGCCACAAGAACGAGTATCTAGTCAGCAGACTAAGGCTTGCCATCTTGAATCCCA
CAGCCGGATTAACTCTTAACGGTGCCAAGGTCTTGGCGTTCGTAATCGGATGCCGGCCCGGTCGC
GGCGACGCCGTTCACTCGAAACCCAAGGGTTGATTTCCTTTTTCG
Right flanking sequence: Indices 74794 -- 75293
GGGTTGCAAAACGAAACACTTTCGGGTATAAAAGAATCGGGTCATTTCGGTAAAATCGTAAATCC
ACATCGACACTATGGTTAAGGGAATCTCAACCTTTTTGGCTCGGTTCCATTTGGGACCCGATCAC
TCTCCACCCCAGATCTATAACTGGACTCTTTACATGTGTATGTTCGTGTTCGGTATTTTGGGCAG
TGCCAGAGGGTATGATGAAGGCAATGTTGCGGGCAGCATTGCTCAGAAGTCTTTCAAGGACCGGT
TCATCAACACTGAGGACGAACAGTCTAATATCACGTCGATGGTGCAGCTCGGTTCCATCCCCGGA
GCTATGCTTGCCATGTTCACTGTTGACTATTTTGGCCGGGTTCGTTGTTTGCAAATCATTTGTGT
GATTTGGATTGTGGGTACCGTGATTCAGCTTACGTCCAAGGACATCGGGCAGTTGTACGCTGGTC
GGATTATTGAAGGTCTTGCTATCGGTCATACCACCACCATTGGTC
Found at i:84445 original size:42 final size:42
Alignment explanation
Indices: 84393--84472 Score: 133
Period size: 42 Copynumber: 1.9 Consensus size: 42
84383 CGAAACGACG
* *
84393 TCATCGATCGTCACACAGTCATCTGATATTGAGGAATCAACC
1 TCATCAATCGTCACACAGTCATCGGATATTGAGGAATCAACC
*
84435 TCATCAATCGTCACACAGTCATCGGATGTTGAGGAATC
1 TCATCAATCGTCACACAGTCATCGGATATTGAGGAATC
84473 TACTTCAAAG
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 35 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (42 bp):
TCATCAATCGTCACACAGTCATCGGATATTGAGGAATCAACC
Left flanking sequence: Indices 83893 -- 84392
CCTCACGTTCGTCTGAAAACACTGAAACGCCTTCTTCTAGTGAGTCGGTTAGTTTGAGCAATTCT
AGTGAGCTGGGTTTAACTGAGCTGGCTAGTGAGCTTGGTTCTACAGAAACGTCCTCAGCTTTAGA
TGAAACTTCCTCCGCTAGTACAGACCTCGAGCTGGAGTCAGAGGACTACTACAGCACGGCAAGCT
TAACTCTGGAATCCCAGTCGTTGGTAGATGAGGAGTCTACAACAGGACAGGACTCTAGCAAGGAA
GTCAGTTCAGTAACCATTTCCCCGTCATCTAGTATTGAGGAGTCAACTTCGGCTTTGACTATGAG
CGTGGAAGAACTGTCTTGGGTCAGTGAATCAACAGAAGACCAAAATTGGCACACAGAAACAAGTT
CGACCACTGACTCCCTGTCCTCTAATACTTCGGAACTGACTATGACGGAGGAGGAGTTGTCTTCT
GCCTTGAGCGTGTCTTCAAGTAGTGAAGACTTGAGCGAAACGACG
Right flanking sequence: Indices 84473 -- 84972
TACTTCAAAGCTGGTTACAAGCAATGATGATCTGTCGTCCGTGACTAGTGCGTCTACACTGGGGC
AAAATTCGAGTTCCGATAGTACTTCTTCTACGATTACTCTGTCTTCCCTTGCTGAGGGTTCGACT
ACACAACCAACTACGAACCAGGGAGAGCTGCTGTCTTCTACCCCGATTGCTCCTACTTCTTCATC
TCTGGGGTACACGACCCCAGGGCAAGTTTCAAGTGATCTGTCGGCCACTACGATCGGAACAGGAC
AATTGAGCTCTTCTTCTGAATTTGAAGAGTCACCCCTGGAACAATCATTATGGGGCACTATTTCT
CTTGAGACCGAGGATTCGACGCTGATTGAAGAATCATCCGAGAGCTCCAATGCTGAAGAGTCGAC
TATGGATTCGATTACTAGTATGAGTTTCTCAACTCTTGATAGGAGTTCTTCTCTGATACCAAGCA
CGACGTTCTCGAGTAACGAGACTCCTACGGCTTCTTCAACCGATT
Found at i:87254 original size:15 final size:15
Alignment explanation
Indices: 87219--87254 Score: 51
Period size: 12 Copynumber: 2.6 Consensus size: 15
87209 GCCCCCCCGA
87219 AACAGCAGCAGAGAC
1 AACAGCAGCAGAGAC
87234 --CA-CAGCAGAGAC
1 AACAGCAGCAGAGAC
87246 AACAGCAGC
1 AACAGCAGC
87255 CCCAGCAGCA
Statistics
Matches: 18, Mismatches: 0, Indels: 6
0.75 0.00 0.25
Matches are distributed among these distances:
12 10 0.56
13 2 0.11
14 2 0.11
15 4 0.22
ACGTcount: A:0.44, C:0.31, G:0.25, T:0.00
Consensus pattern (15 bp):
AACAGCAGCAGAGAC
Left flanking sequence: Indices 86719 -- 87218
CGCTAAACAAATCTCTCATAACGGCTCTAAGCCACAGGTCACAATAACGGTTTCCTAATCCGGTG
ACGGGTTGCATACTGTCAAAACATAGGCACGGCCTAAATCTCACGGTTACGTCAGAGGGTCGCCA
CATAAGAGGAGCAGGCTGCCCTAGTCAGCCTCACTTCTTATTTCCGTTTGCGCGTCGCCTGCGCC
CCGGTAGCAAAGCCTTGCTGTCGGTCATCATTCTTTGCTATAGCCCGGTGGGCACATGCAGAATC
TAAATAATAATAGAGACGGATCACTCATGTCGGTGAAGTTTGCCTCTGTAATTTCACGCATAAAA
TTTGGAATATTTACCCTTATTCACCACTTGAGTTGATCGATTTCCACTAAAACTACACGCATCAT
GGGCACCCAAGAACCTCCCTCCTACAATGAAGTGATGAGCCTGCCCGGCCAGGGCCTGTCTCGTC
CTGCGAGACAGCCCCAGCCTAGCAGAAAGCAGCAGGCCCCCCCGA
Right flanking sequence: Indices 87255 -- 87754
CCCAGCAGCAGTACCACCAGCCTCAGCAACACCATCAGCAGCAGTATCAGCAGCCTCAGCATCCC
TACCAACAGCCGCATCACCCCCAGCAAGCCCACCACGGCCAGCAAAAGTATTACACGGCCCAACC
AGGCCAGCACCGCGTTTATGTCCAACAGGCCCAGCCCATCTATGTGCAACAGCCAGCTCCCCAGC
AAGATGATGGGTGCTGTGCTTCATGTTGCTGCGCCTGTTGTGCAGCATGCTGTGCAATCTTGACA
TGTGGTATCATTATTTGAGTGGAATGATACACAATGGTGATACCGTGGGATGGTCCTGGTAATCC
CGGCAGGCGCGGGATTGAATCGAACAGTGCAATCTAGCATAATATATAGCTAATCTTCATGTTAA
TACCATCATCATTAAGGAGAACTTTTGTAGCTCCAAGACATACAGCTTGTTTTACCGAGACTCGG
TTTCATCTGTCAAACCTGACACATGCAAAACTCCCAATCAAACGT
Found at i:94670 original size:11 final size:11
Alignment explanation
Indices: 94654--94748 Score: 79
Period size: 11 Copynumber: 8.6 Consensus size: 11
94644 TCCAACCTTG
94654 CTCTTACCATC
1 CTCTTACCATC
94665 CTCTTACCATC
1 CTCTTACCATC
*
94676 CTCCTACC-TCC
1 CTCTTACCAT-C
*
94687 CTCTTACCTTC
1 CTCTTACCATC
*
94698 CTCCTACC-TCC
1 CTCTTACCAT-C
* *
94709 CTCCTACCTTC
1 CTCTTACCATC
*
94720 CTAC-TACCAAC
1 CT-CTTACCATC
*
94731 CTCTTACCCTC
1 CTCTTACCATC
94742 CTCTTAC
1 CTCTTAC
94749 TCTCCTCTCT
Statistics
Matches: 71, Mismatches: 7, Indels: 12
0.79 0.08 0.13
Matches are distributed among these distances:
10 3 0.04
11 65 0.92
12 3 0.04
ACGTcount: A:0.15, C:0.52, G:0.00, T:0.34
Consensus pattern (11 bp):
CTCTTACCATC
Left flanking sequence: Indices 94154 -- 94653
ATGTGGTGGAACATGACGCGCGGGGGTGATGGAATGCTTTACGTAAAGCATGGGAATATGTCCAG
CACGCTTGATTCTTGTTTAGGTTGGGTACACTGGCCTGGGCTTTTGGCGTCTCTTTTACCGAGAC
AAGTACGATACTGATACGAGAAGCTTGTGGATTTGTAACTCAATGACACTTTGTGTATTTTTAGA
AGCAATTGAAACGTTGGTTCTATTGAACAGGGTGGGGATTTGCGTTCAAAGATAGCGTAGGTCAA
ATTTGTGTGGGTTTGGATTTTTAGAGTTCTAAGTCTGTTGTAGGCCTAATCACACAGTCCAGATT
AAAACCTGGTGGCCATCCTCATCGGTTTTGACTTCTCGTTTTAAAACCGTCCTCTCCTTTTCTCA
TCTTCTGAACTCTACGGCTGTTTGCTTTCCTCTCCCTTATTCAAACCTTCATCACCGAGTTTGGT
TTTTAAGACACTTCACCGTTTTCTTCTATCCATCCTCCAACCTTG
Right flanking sequence: Indices 94749 -- 95248
TCTCCTCTCTCTTTCGCTTATCTATTCCTATTTACATGCTACCACACCTTCCACCACGGCTTGCT
CTGCTTCTCCACCGCCTCAATCTCCGCCAACTGCGCCTGGGCAGCCTTCACTTGCTCCGCCACCT
GCTTCGGCGTGGCCTCATCGAACAACTCCTCGTCCACCAAGTTGATGGACAAGTTGCGCTGGTCC
TTCTCAAGAGGAGACCCGATACGACCAGTCTTCCAGATGGGGTCCTGCGACAGCGACGTCTTCTT
GACAATCTCCATAAGCGCCTGCTGCTCCTTGCGACGGAGAGCCCGGCCCTGCTCGTACTCAGCCC
TCACCTCCGGAGAGAATCGGGAAATCAACTCCTCGTCGGTGGGGGTGGTGTAGATGTAGAGCAAC
ACCCCCGTGCCGATGATACACCCGCCAGCAAAATACACGCGCGCCCACCGGTACCAGAGCGGTTT
GGTAGACATGGTTGGGGTCAGGTCGTGGTGGTTTGCGATTTGAGG
Found at i:94683 original size:22 final size:22
Alignment explanation
Indices: 94664--94758 Score: 109
Period size: 22 Copynumber: 4.2 Consensus size: 22
94654 CTCTTACCAT
*
94664 CCTCTTACCATCCTCCTACCTC
1 CCTCTTACCTTCCTCCTACCTC
94686 CCTCTTACCTTCCTCCTACCTC
1 CCTCTTACCTTCCTCCTACCTC
* * **
94708 CCTCCTACCTTCCTACTACCAA
1 CCTCTTACCTTCCTCCTACCTC
* *
94730 CCTCTTACCCTCCTCTTACTCTC
1 CCTCTTACCTTCCTCCTAC-CTC
94753 CTCTCT
1 C-CTCT
94759 CTTTCGCTTA
Statistics
Matches: 60, Mismatches: 11, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
22 54 0.90
23 2 0.03
24 4 0.07
ACGTcount: A:0.13, C:0.53, G:0.00, T:0.35
Consensus pattern (22 bp):
CCTCTTACCTTCCTCCTACCTC
Left flanking sequence: Indices 94164 -- 94663
ACATGACGCGCGGGGGTGATGGAATGCTTTACGTAAAGCATGGGAATATGTCCAGCACGCTTGAT
TCTTGTTTAGGTTGGGTACACTGGCCTGGGCTTTTGGCGTCTCTTTTACCGAGACAAGTACGATA
CTGATACGAGAAGCTTGTGGATTTGTAACTCAATGACACTTTGTGTATTTTTAGAAGCAATTGAA
ACGTTGGTTCTATTGAACAGGGTGGGGATTTGCGTTCAAAGATAGCGTAGGTCAAATTTGTGTGG
GTTTGGATTTTTAGAGTTCTAAGTCTGTTGTAGGCCTAATCACACAGTCCAGATTAAAACCTGGT
GGCCATCCTCATCGGTTTTGACTTCTCGTTTTAAAACCGTCCTCTCCTTTTCTCATCTTCTGAAC
TCTACGGCTGTTTGCTTTCCTCTCCCTTATTCAAACCTTCATCACCGAGTTTGGTTTTTAAGACA
CTTCACCGTTTTCTTCTATCCATCCTCCAACCTTGCTCTTACCAT
Right flanking sequence: Indices 94759 -- 95258
CTTTCGCTTATCTATTCCTATTTACATGCTACCACACCTTCCACCACGGCTTGCTCTGCTTCTCC
ACCGCCTCAATCTCCGCCAACTGCGCCTGGGCAGCCTTCACTTGCTCCGCCACCTGCTTCGGCGT
GGCCTCATCGAACAACTCCTCGTCCACCAAGTTGATGGACAAGTTGCGCTGGTCCTTCTCAAGAG
GAGACCCGATACGACCAGTCTTCCAGATGGGGTCCTGCGACAGCGACGTCTTCTTGACAATCTCC
ATAAGCGCCTGCTGCTCCTTGCGACGGAGAGCCCGGCCCTGCTCGTACTCAGCCCTCACCTCCGG
AGAGAATCGGGAAATCAACTCCTCGTCGGTGGGGGTGGTGTAGATGTAGAGCAACACCCCCGTGC
CGATGATACACCCGCCAGCAAAATACACGCGCGCCCACCGGTACCAGAGCGGTTTGGTAGACATG
GTTGGGGTCAGGTCGTGGTGGTTTGCGATTTGAGGGACGGGTCAC
Found at i:94691 original size:33 final size:33
Alignment explanation
Indices: 94638--94758 Score: 111
Period size: 33 Copynumber: 3.6 Consensus size: 33
94628 TTTCTTCTAT
* **
94638 CCATCCTCCAACCTTGCTCTTACCATCCTCTTA
1 CCATCCTCCTACCTCCCTCTTACCATCCTCTTA
* *
94671 CCATCCTCCTACCTCCCTCTTACCTTCCTCCTA
1 CCATCCTCCTACCTCCCTCTTACCATCCTCTTA
* *
94704 CC-TCCCTCCTACCTTCCTAC-TACCAACCTCTTA
1 CCAT-CCTCCTACCTCCCT-CTTACCATCCTCTTA
* *
94737 CCCTCCTCTTACTCTCCTCTCT
1 CCATCCTCCTAC-CTCC-CTCT
94759 CTTTCGCTTA
Statistics
Matches: 71, Mismatches: 11, Indels: 10
0.77 0.12 0.11
Matches are distributed among these distances:
32 1 0.01
33 62 0.87
34 6 0.08
35 2 0.03
ACGTcount: A:0.14, C:0.51, G:0.01, T:0.34
Consensus pattern (33 bp):
CCATCCTCCTACCTCCCTCTTACCATCCTCTTA
Left flanking sequence: Indices 94138 -- 94637
AGCAAATGCTGGTGCCATGTGGTGGAACATGACGCGCGGGGGTGATGGAATGCTTTACGTAAAGC
ATGGGAATATGTCCAGCACGCTTGATTCTTGTTTAGGTTGGGTACACTGGCCTGGGCTTTTGGCG
TCTCTTTTACCGAGACAAGTACGATACTGATACGAGAAGCTTGTGGATTTGTAACTCAATGACAC
TTTGTGTATTTTTAGAAGCAATTGAAACGTTGGTTCTATTGAACAGGGTGGGGATTTGCGTTCAA
AGATAGCGTAGGTCAAATTTGTGTGGGTTTGGATTTTTAGAGTTCTAAGTCTGTTGTAGGCCTAA
TCACACAGTCCAGATTAAAACCTGGTGGCCATCCTCATCGGTTTTGACTTCTCGTTTTAAAACCG
TCCTCTCCTTTTCTCATCTTCTGAACTCTACGGCTGTTTGCTTTCCTCTCCCTTATTCAAACCTT
CATCACCGAGTTTGGTTTTTAAGACACTTCACCGTTTTCTTCTAT
Right flanking sequence: Indices 94759 -- 95258
CTTTCGCTTATCTATTCCTATTTACATGCTACCACACCTTCCACCACGGCTTGCTCTGCTTCTCC
ACCGCCTCAATCTCCGCCAACTGCGCCTGGGCAGCCTTCACTTGCTCCGCCACCTGCTTCGGCGT
GGCCTCATCGAACAACTCCTCGTCCACCAAGTTGATGGACAAGTTGCGCTGGTCCTTCTCAAGAG
GAGACCCGATACGACCAGTCTTCCAGATGGGGTCCTGCGACAGCGACGTCTTCTTGACAATCTCC
ATAAGCGCCTGCTGCTCCTTGCGACGGAGAGCCCGGCCCTGCTCGTACTCAGCCCTCACCTCCGG
AGAGAATCGGGAAATCAACTCCTCGTCGGTGGGGGTGGTGTAGATGTAGAGCAACACCCCCGTGC
CGATGATACACCCGCCAGCAAAATACACGCGCGCCCACCGGTACCAGAGCGGTTTGGTAGACATG
GTTGGGGTCAGGTCGTGGTGGTTTGCGATTTGAGGGACGGGTCAC
Found at i:119606 original size:15 final size:15
Alignment explanation
Indices: 119586--119617 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
119576 CGTACCAGGG
119586 GTACCTGGGCAGCCA
1 GTACCTGGGCAGCCA
119601 GTACCTGGGCAGCCA
1 GTACCTGGGCAGCCA
119616 GT
1 GT
119618 GCCAGGGGAG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.19, C:0.31, G:0.34, T:0.16
Consensus pattern (15 bp):
GTACCTGGGCAGCCA
Left flanking sequence: Indices 119086 -- 119585
GCCCCGCCGCCCAAGACCGCGCCCACCACGCTCCCGGTGCCGCCCGAGCTCGTGGGCCTCTACGA
CACCGCGTTGTTCCAGCTCGTCAAGGTGCTGGTGCTGCAGCGGGTGTGGGCGATCTTGAAAAACT
ATACCGGCAACGGCGACCAGTTTGTGCGGCGGATCGTGAAGAAGTTTGGCCGGTACACGCCGTTG
CGGGCGCTCCGGTTGCTCACCGAGGACCAGGTCCAGGTGCACGGGCTGCAGCTGTTCCAGCAGGT
GTACAACACCCAGATCGAGCTCAAGTACGGAGCCATGGCGTTGCCCCAGGAGCAGTTTGAGTGTG
TGTTGATGCTCGTCAAGTTTGCGCCGCGGCTCCGCGACGAGGTGGTGTACCACCTCGAGGACAAC
CAGTTGGCGTGGACGATGTACAACGTGTGCCAGTACATGGACCGTCGCGAGCCGCCGCGCCAGCA
GTACCAGTACCAGCAGCCCAAGGCGCCGCTGCACCCGTACCAGGG
Right flanking sequence: Indices 119618 -- 120117
GCCAGGGGAGCCCCTACGGCAGCCAATACTCGCAACCGGACCCTGCGCCGCCGGCTCGGCCGCAG
GGGAAGCGAGCGATCTCGATCCGGCTGTTTGGCCGGCGTTCTTGTAAGAACCAGTGATTTGCATA
GAGTACCAAGTACTAAGTACCAATGGTACGTATTTACGGAATGGATAATAGAGGAAAGAAGAATG
TAGATGGAAGGGAGAAACTGTGGGTGGAGAATGGTGGAAGCGGGCTAGGAGCGGGCTGGGATGGC
TCAATTGAGAAGATAGAGAAGTTAGGCTGGTTTGAGACTTAAGAGTTGGCTTTTTTACTGTTAGT
TTATTCTGTATTCTATTAGCTGGTTCTATGAACCTACCTAGATATATGGAATTATTAGGAGAACC
ACACCAAACACCAAATTGATCACATTTCTGTTCATCCACCTCAATCAACCACACACACCAACACG
GTATATTTTCCACACGAACATTTTACCACCTACCTTATACCATCT
Found at i:119629 original size:15 final size:15
Alignment explanation
Indices: 119586--119629 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
119576 CGTACCAGGG
*
119586 GTACCTGGGCAGCCA
1 GTACCAGGGCAGCCA
*
119601 GTACCTGGGCAGCCA
1 GTACCAGGGCAGCCA
* *
119616 GTGCCAGGGGAGCC
1 GTACCAGGGCAGCC
119630 CCTACGGCAG
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 26 1.00
ACGTcount: A:0.18, C:0.32, G:0.39, T:0.11
Consensus pattern (15 bp):
GTACCAGGGCAGCCA
Left flanking sequence: Indices 119086 -- 119585
GCCCCGCCGCCCAAGACCGCGCCCACCACGCTCCCGGTGCCGCCCGAGCTCGTGGGCCTCTACGA
CACCGCGTTGTTCCAGCTCGTCAAGGTGCTGGTGCTGCAGCGGGTGTGGGCGATCTTGAAAAACT
ATACCGGCAACGGCGACCAGTTTGTGCGGCGGATCGTGAAGAAGTTTGGCCGGTACACGCCGTTG
CGGGCGCTCCGGTTGCTCACCGAGGACCAGGTCCAGGTGCACGGGCTGCAGCTGTTCCAGCAGGT
GTACAACACCCAGATCGAGCTCAAGTACGGAGCCATGGCGTTGCCCCAGGAGCAGTTTGAGTGTG
TGTTGATGCTCGTCAAGTTTGCGCCGCGGCTCCGCGACGAGGTGGTGTACCACCTCGAGGACAAC
CAGTTGGCGTGGACGATGTACAACGTGTGCCAGTACATGGACCGTCGCGAGCCGCCGCGCCAGCA
GTACCAGTACCAGCAGCCCAAGGCGCCGCTGCACCCGTACCAGGG
Right flanking sequence: Indices 119630 -- 120129
CCTACGGCAGCCAATACTCGCAACCGGACCCTGCGCCGCCGGCTCGGCCGCAGGGGAAGCGAGCG
ATCTCGATCCGGCTGTTTGGCCGGCGTTCTTGTAAGAACCAGTGATTTGCATAGAGTACCAAGTA
CTAAGTACCAATGGTACGTATTTACGGAATGGATAATAGAGGAAAGAAGAATGTAGATGGAAGGG
AGAAACTGTGGGTGGAGAATGGTGGAAGCGGGCTAGGAGCGGGCTGGGATGGCTCAATTGAGAAG
ATAGAGAAGTTAGGCTGGTTTGAGACTTAAGAGTTGGCTTTTTTACTGTTAGTTTATTCTGTATT
CTATTAGCTGGTTCTATGAACCTACCTAGATATATGGAATTATTAGGAGAACCACACCAAACACC
AAATTGATCACATTTCTGTTCATCCACCTCAATCAACCACACACACCAACACGGTATATTTTCCA
CACGAACATTTTACCACCTACCTTATACCATCTACCACTGACACT
Found at i:121510 original size:11 final size:11
Alignment explanation
Indices: 121494--121519 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
121484 CTGTGCACCC
121494 CACCACGCACG
1 CACCACGCACG
121505 CACCACGCACG
1 CACCACGCACG
121516 CACC
1 CACC
121520 GCGCGCGCCG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.27, C:0.58, G:0.15, T:0.00
Consensus pattern (11 bp):
CACCACGCACG
Left flanking sequence: Indices 120994 -- 121493
ACCCCCGACCGGCTCTCGGAGTTTCTGAGTTCCTCACTCCGGCCTTGACAGCCAGTGTTGCAGTA
ACCTGCTTACGTAACCCGGACGCCTAACGGGACGGTGGGTGATGGTGGCTTATATAGCGGATGCC
ACCCGGGTACGGCTACAGTGGTGGTGGTGCGATGGTCCATGGGCCAACCGGGCGCCTGGGACTTG
GCGTGGCCCGATCGGGGTTTGGGCGGCTCGGATTTGTTTGTGACACGTAACGGAAATAGACGAGC
GCATACGTGGCAGCGTGTAGGCCGATGTGCTCCCTGAGCCCCCCACAGCCCCTTCTCGCGCACGC
AGCCTTCGTCGTGCTTCTAGTCCTCCTCCTCTCGGTCCTCCCGTTCCTCCTCGTCGTCCTCCTCC
TGGTCCCCTCCCCTCGTGTCCTCTCCGCTCCCCAGCCACACTCTCCCCCACCCGCCTCCACCCCA
GATCGCGCCCACCGCGCTCGCGCTCGCACCGCGCTCTGTGCACCC
Right flanking sequence: Indices 121520 -- 122019
GCGCGCGCCGCAGGGGACGCGTTAACACCACCTCACCCTCTTGGGCACCATTTCCCACCATATAG
ACTTCCAGGCAGTGTCCCACCCCCCAAATGGCCGTCCACAAGGCACTAGTCCTCTTGAGCTGTAC
TTTCTTGGGCCTCGTGTGCGGGACCCTCTACCTCTTTTCGCTGTACCTGCCCCAGCTCGCCAGCA
GGCTCGGGTACTCCGCCAGCGACCTGCTGACGATGGCGTTGTGTGGCACCGTCGGGGTGGCGGTG
GCCGGCCCCGTGGTCGGGGCGCTCGTTGACCGCCGCGGCTACCTGTTGGCGGTGGTGCTCGGGGC
GGCGTTGATCGTGTGCTCCTACGCGGTGTTGCACCGCCAGTATGTGCGGGGCGAGCCCGCGGCAC
TGGTGCCGCTCAGTGCCGGGGCCATGTTCTTGGTCGGGTGCGGGCTGACCTTCATCAACCTGGCG
ACGATCAAGTGTGCTGCCGTGTGCTTCCCTGCCATCCGCGGCATC
Found at i:123104 original size:13 final size:13
Alignment explanation
Indices: 123086--123124 Score: 53
Period size: 13 Copynumber: 3.0 Consensus size: 13
123076 TAAATGGGTG
123086 GAGGTGTAA-TGTT
1 GAGGTGTAAGTG-T
123099 GAGGTGTAAGTGT
1 GAGGTGTAAGTGT
*
123112 GAGGTGTATGTGT
1 GAGGTGTAAGTGT
123125 ACAGAATGTG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
13 22 0.92
14 2 0.08
ACGTcount: A:0.21, C:0.00, G:0.44, T:0.36
Consensus pattern (13 bp):
GAGGTGTAAGTGT
Left flanking sequence: Indices 122586 -- 123085
CTACGTGGGGCAGGCGTCGCAGTTGTGGGTGACGCTGGTGGCACACGGGGTGCTGTACGGGTTCC
TCTTTTGCATGATGCCGTTGCTAGTCGGCGACACGTTTGGGTTGGCGCAGTTCTCCTACAACTGG
GGCATCGTCAACTTGGCGCCCATCGTGCCCAGCTACGTGCTCACGCTGTGGTTCGGGCGGGTGTA
CGACCTGCTGCTGGAGGAGGTGCCGCACACCGAGATGGTGGACGGCGCCCCCGTCACGGTGACGT
CATTGCAGTGTGTGCGCGGGGTGGCGTGCTACGCACGGGTGTTCAGTGTGACCACCGTGGTGGCA
GTGGTGGCGGTGGCGGTGGCGATGGTGGCGGTGACGAAGCGGACGGCCCGGCGCGCCGCATAGGG
GTGAGCCCCGAGCATTAGCATAGGCCCTGGCCAGATACCTTATAGACTAATGGATAATAGAATGG
GTGTGGGTGTAAATGGGTGAGGGAGGTTTAGGGTGTAAATGGGTG
Right flanking sequence: Indices 123125 -- 123624
ACAGAATGTGAGGGTGAATGGGTGTAGTTGAGACTAAATACTGCCCAGTTTGGGGTAGAATGGGT
CTTTAGTCCATGGATTATCTGGTGAGTAGATCAGTTGAGTGGACTCTCTATTCACCTAAATACAT
TCTAAGTCATGTTTGCAAGAATTGGTCTTATTCGGCCACTTCGTCACAGATAATTATCTTTGGGT
CGTTTCAAATAGGTATGGAACCGAGGTGAGGTGGAAAATTCATCCCCTTGTGATCAAAACAACCG
TCTTGGGGAAGAGTAGGGTAATATGGAACATTTGAAACAATTCTACTTGGGTTAGGTGTAGCGTG
TGGCTGGTGTGTGAGTGTAGTCTGTGGGTGTAGGTTGTGGGTGTAGGGTCTGACTGGTTGAAGGT
TGTAAAGGGACGTGAGAAAGAGAAGTCGTTTATGGTATTGGGCGGTGTGGGTGGGTTGGAAATGG
TATTGGGTGGTGTGAGGGATGGTTTACAAATTGGGAAGGGTGGTG
Found at i:123496 original size:13 final size:14
Alignment explanation
Indices: 123459--123501 Score: 54
Period size: 13 Copynumber: 3.1 Consensus size: 14
123449 GTGGCTGGTG
*
123459 TGTGAGTGTA-GTC
1 TGTGGGTGTAGGTC
123472 TGTGGGTGTAGGT-
1 TGTGGGTGTAGGTC
123485 TGTGGGTGTAGGGTC
1 TGTGGGTGTA-GGTC
123500 TG
1 TG
123502 ACTGGTTGAA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
13 19 0.73
14 5 0.19
15 2 0.08
ACGTcount: A:0.09, C:0.05, G:0.49, T:0.37
Consensus pattern (14 bp):
TGTGGGTGTAGGTC
Left flanking sequence: Indices 122959 -- 123458
CGGCGCGCCGCATAGGGGTGAGCCCCGAGCATTAGCATAGGCCCTGGCCAGATACCTTATAGACT
AATGGATAATAGAATGGGTGTGGGTGTAAATGGGTGAGGGAGGTTTAGGGTGTAAATGGGTGGAG
GTGTAATGTTGAGGTGTAAGTGTGAGGTGTATGTGTACAGAATGTGAGGGTGAATGGGTGTAGTT
GAGACTAAATACTGCCCAGTTTGGGGTAGAATGGGTCTTTAGTCCATGGATTATCTGGTGAGTAG
ATCAGTTGAGTGGACTCTCTATTCACCTAAATACATTCTAAGTCATGTTTGCAAGAATTGGTCTT
ATTCGGCCACTTCGTCACAGATAATTATCTTTGGGTCGTTTCAAATAGGTATGGAACCGAGGTGA
GGTGGAAAATTCATCCCCTTGTGATCAAAACAACCGTCTTGGGGAAGAGTAGGGTAATATGGAAC
ATTTGAAACAATTCTACTTGGGTTAGGTGTAGCGTGTGGCTGGTG
Right flanking sequence: Indices 123502 -- 124001
ACTGGTTGAAGGTTGTAAAGGGACGTGAGAAAGAGAAGTCGTTTATGGTATTGGGCGGTGTGGGT
GGGTTGGAAATGGTATTGGGTGGTGTGAGGGATGGTTTACAAATTGGGAAGGGTGGTGTGGTGTA
AGAGTGGGGTGGGGGTGTGTGTGAATTAGACGAGAATGTAGAGACAATTGGGTGGTTCGATGGAT
GAGGATTAGACGGAGAGAGTATTTGATGGAGTGAGAAATAGACGAAGGAAGAAGCCGGAGAGCAG
AAAAGCCTCAATTGATGGGGTTGGTGCCGTCACAATTGAGTCTCTCCTCCGTAAGTTGTAATTGA
ATCTGTCCTCGTTGGTTGCAATTGAGTCTGTCTGCGTTATACCACCATTGCAAGGGATACGTCTG
AGTATGCCACCATGTACACCACTTAAACTTTTGGCATCCCTGAGTATGCCACCAAAGACACTACT
CAAACTCCACTAAGCATTTCTGAGTATGCAACCTAAAAACACCAC
Found at i:123835 original size:26 final size:25
Alignment explanation
Indices: 123794--123858 Score: 76
Period size: 25 Copynumber: 2.6 Consensus size: 25
123784 GGTGCCGTCA
*
123794 CAATTGAGTCTCTCCTCCGTAAGTTG
1 CAATTGAGTCTGTCCT-CGTAAGTTG
* * **
123820 TAATTGAATCTGTCCTCGTTGGTTG
1 CAATTGAGTCTGTCCTCGTAAGTTG
123845 CAATTGAGTCTGTC
1 CAATTGAGTCTGTC
123859 TGCGTTATAC
Statistics
Matches: 32, Mismatches: 7, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
25 19 0.59
26 13 0.41
ACGTcount: A:0.18, C:0.22, G:0.22, T:0.38
Consensus pattern (25 bp):
CAATTGAGTCTGTCCTCGTAAGTTG
Left flanking sequence: Indices 123294 -- 123793
TTCGTCACAGATAATTATCTTTGGGTCGTTTCAAATAGGTATGGAACCGAGGTGAGGTGGAAAAT
TCATCCCCTTGTGATCAAAACAACCGTCTTGGGGAAGAGTAGGGTAATATGGAACATTTGAAACA
ATTCTACTTGGGTTAGGTGTAGCGTGTGGCTGGTGTGTGAGTGTAGTCTGTGGGTGTAGGTTGTG
GGTGTAGGGTCTGACTGGTTGAAGGTTGTAAAGGGACGTGAGAAAGAGAAGTCGTTTATGGTATT
GGGCGGTGTGGGTGGGTTGGAAATGGTATTGGGTGGTGTGAGGGATGGTTTACAAATTGGGAAGG
GTGGTGTGGTGTAAGAGTGGGGTGGGGGTGTGTGTGAATTAGACGAGAATGTAGAGACAATTGGG
TGGTTCGATGGATGAGGATTAGACGGAGAGAGTATTTGATGGAGTGAGAAATAGACGAAGGAAGA
AGCCGGAGAGCAGAAAAGCCTCAATTGATGGGGTTGGTGCCGTCA
Right flanking sequence: Indices 123859 -- 124358
TGCGTTATACCACCATTGCAAGGGATACGTCTGAGTATGCCACCATGTACACCACTTAAACTTTT
GGCATCCCTGAGTATGCCACCAAAGACACTACTCAAACTCCACTAAGCATTTCTGAGTATGCAAC
CTAAAAACACCACTTAAACCCACTTCAAAGATATTCCTGTATTCTAATAATCAAAGTAGTACTGG
CTGGGCACCTGGCACCGGAGACACACGTAGATGTTGAGCTTGCGGTCCACGAGGCGGGCCACGTC
CTGGTCAAGCTGCTGCTTGCACGTAATACACCGGACAATCAGCGACATGGTGGGAGGAGCGGCTG
TGTGGTTGGGTAGGGAGTGAATACACAGCGACGCGGGTGAGAGCAATGGCTATTAATACTGCTGA
AAGGAGCTGCTAAGGTACTGCTGAAAGGAGAAATTTGAATGGTTGGGGGCAGGAGGGCGGCAGAA
GGGCGGCAGGCGGCTATTATATTCTGTCACCTGCATTTCCCCTAA
Found at i:125676 original size:13 final size:13
Alignment explanation
Indices: 125658--125695 Score: 76
Period size: 13 Copynumber: 2.9 Consensus size: 13
125648 CAAGTAAGCG
125658 AGAGGTGGGCTGT
1 AGAGGTGGGCTGT
125671 AGAGGTGGGCTGT
1 AGAGGTGGGCTGT
125684 AGAGGTGGGCTG
1 AGAGGTGGGCTG
125696 AAAAGGGTGG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.16, C:0.08, G:0.55, T:0.21
Consensus pattern (13 bp):
AGAGGTGGGCTGT
Left flanking sequence: Indices 125158 -- 125657
ACAAGACGTCTTGGTTTATTTTGTCTATCATTCAAAGTCTATTCCGTGCTTTTTTCGAAGGAAGC
CAATTCTACGTAGTCATTGCCAACTCCTACGCAATAATCGATATCTACTTATAGGATGGACCATC
ACAACAATCGATCTGCCTCATATTCTCTTTTTTGTATGCATTAACTATCGACACTTAAAGGGGAT
CGTAGGGGGGTTCTTGCAAATCCGGCACAGGTAGTACCCGGGCTTTCTCGAAATCTCGCGGGCTC
CCCGGATATCGATCCACTCGCTACAGATCAGACAACGAACAACTTTTTTGACACCCATGGCTTGG
ATACTACCACTCGAGAGTGGTGGTATTTATACACCGCCAGGGTGCTAGACGACAGTGGTAGTGTT
GGGTGTGGCAGCTAGCCGACCCAGAAGTGTTTACGAATCGGTCTGGTAGGACTCATAATATGGGT
ACTCGGGGACATGAAAACAAACATAGACGCAGGGTCAAGTAAGCG
Right flanking sequence: Indices 125696 -- 126195
AAAAGGGTGGACTGAAAAACCAGGAAGATATCAGATTGGTCGTGGCTTGATAACTGAATTCTTAC
CTGAAAATTGGAGGCATTCATTTTGCGATCCCATGGAAATTTTGCAACTATCCCAGCAAAATAGG
ACACAGATGCTTACCACATTGGAAATGTTTTGCATACCACTCAGGTCTCTCGTTTGACGAGAATA
CCCAGCACCCGGGAACGGTCGGATTTCTCCGCTCTCGAGAGCTAAAACTGAAGTAGTACTAGATT
TTGTAAAGAATGTGCCCTACGAGCCATGAAGACAGGCATTAGCTAAAAGAAATGAAGAAAATTTT
ACTTGATAAGCATAGGTTGGAAATAAGCTCGGGCGTTGACCAAACCTCTCGCTGAGTTCAAAGCA
CTACCACCAAGATACCAACTCTCACATCATGTACCACAGCCAATTGAGTAGCCAGGTGATAATTG
GCCATAAGGGTGACTACTATGCCTCTATACTTCCTCTCGTCACCT
Found at i:126223 original size:12 final size:12
Alignment explanation
Indices: 126193--126241 Score: 62
Period size: 12 Copynumber: 4.1 Consensus size: 12
126183 CCTCTCGTCA
*
126193 CCTCCCTCTCCT
1 CCTCCCTCCCCT
* *
126205 TCACCCTCCCCT
1 CCTCCCTCCCCT
126217 CCTCCCTCCCCT
1 CCTCCCTCCCCT
*
126229 CCTCCCTCGCCT
1 CCTCCCTCCCCT
126241 C
1 C
126242 ACCTCCTCCC
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
12 31 1.00
ACGTcount: A:0.02, C:0.69, G:0.02, T:0.27
Consensus pattern (12 bp):
CCTCCCTCCCCT
Left flanking sequence: Indices 125693 -- 126192
CTGAAAAGGGTGGACTGAAAAACCAGGAAGATATCAGATTGGTCGTGGCTTGATAACTGAATTCT
TACCTGAAAATTGGAGGCATTCATTTTGCGATCCCATGGAAATTTTGCAACTATCCCAGCAAAAT
AGGACACAGATGCTTACCACATTGGAAATGTTTTGCATACCACTCAGGTCTCTCGTTTGACGAGA
ATACCCAGCACCCGGGAACGGTCGGATTTCTCCGCTCTCGAGAGCTAAAACTGAAGTAGTACTAG
ATTTTGTAAAGAATGTGCCCTACGAGCCATGAAGACAGGCATTAGCTAAAAGAAATGAAGAAAAT
TTTACTTGATAAGCATAGGTTGGAAATAAGCTCGGGCGTTGACCAAACCTCTCGCTGAGTTCAAA
GCACTACCACCAAGATACCAACTCTCACATCATGTACCACAGCCAATTGAGTAGCCAGGTGATAA
TTGGCCATAAGGGTGACTACTATGCCTCTATACTTCCTCTCGTCA
Right flanking sequence: Indices 126242 -- 126741
ACCTCCTCCCCAAACTAACCAACCTACCCACCCCGTCCCACAACTCATACACACCCACCCTAATA
CACCTTCTACACCACCCTGCACAACCCCCCACGCCCCGTTCGCCAATTGCTTGGCTCCACCGCCG
CCAAGTCCTCGTCGACTTTCACCCACTATATACACTCCCCACCACCATCCTCCTCACTCATGTTG
ATCCTCCCTCACACGCCTCCGCTACCACGGGATGAGCCCAAACTCCCCAATCGCGACGCCGTAGT
GGCGGCGGCTGCTCAAGGCACCGCCAACTACTCCCACTGCCTCAAGTACCTCACGGCGCTAGAGC
ACTACCTCGACCAGGTGTGGACCCTGGAGGCCTCCGCCACCCTTACTAAGAGCCCCTGGATTGAC
CGGGCCCAGGTGCTTGTGCGAGAGGAGGTGAAGTCTCCCACCGACACCCTCCGGAGGGGCCTCCT
GAAATTGTCAATTACTCCCTCGGAGGAGGGAGACGAAACCCAGGA
Found at i:136792 original size:18 final size:18
Alignment explanation
Indices: 136771--136812 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
136761 CTCCACTATC
136771 CCCACCACCTTGCACCCA
1 CCCACCACCTTGCACCCA
* * *
136789 CCCACCAGCTTGCTCGCA
1 CCCACCACCTTGCACCCA
136807 CCCACC
1 CCCACC
136813 CACGCCGCCT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.19, C:0.60, G:0.10, T:0.12
Consensus pattern (18 bp):
CCCACCACCTTGCACCCA
Left flanking sequence: Indices 136271 -- 136770
TCCCAAAGGGGAAAGGTGTAGGGTGGGTTTAGTGAGGAGAGTGTGACCGTTAAGGGTATGAGAAG
GGTTTAGGAAGGATTTGAGAAAGGTGGATTGTTGTAGAGAAGTGTGCTATTTAGCCATGGTTGGT
TGGTTAGGTGGAACACGTACCATTACAGCATTTCCCCTACCCGAACTCTATCTCCTATTCTGTTA
GCGGCAAATATTTAGAGTCGTTTCAATACACGGTACATCCCAGACCGTTCACCAGACTCGCGTAC
GCAAAGCACTACAGTAAACAACCACAGCCCACAATTACACCCAGTATTCTTCCGTTTTGCCCTTC
GTCTCCAACTACCTCCGTTCCCTATCACCCTCTCATTGCCTCCTCTACATCTTCTTAGCCGAGTG
TCCTGCATCCACGCCACCACCAGAGGTCATCTACCCCCACACTACGGCTGACTCCGAGCATTTCC
AGAGAGCACAAAACCACACTGAGATCACACCGAACCTCCACTATC
Right flanking sequence: Indices 136813 -- 137312
CACGCCGCCTACCCCTCGAATCATCGCTGTTGCGAGCCTTGGCCACGCGCGGAACACTTCCCTTA
CAGTCGCCACACCCAACCCCAGTGTCTTCCTAGCGCCTCCATTTCCTGTTTATGCACGGAACTGG
GTGGTACACTATAGCTATTGATGCCCCCACAGACTACGACGACTACCGTACCCTGTCTGTTGCCA
TCGAAACCATCGATCCCTCCCAAATGAACGCTCCCGTGACGGCTCTGGTGGTCTGTGAGGGCACA
GTGCGGCTCTACCGCGAGTTCCTGAACGTTGCTGGCCCTGATATGGGTCTTGCTGGCCCTCCACT
GTACCCTGGCTCTGCCATTGACCCCTCCGAACCCCGGTCTGAGCCCACTATAGGGGCCCTCTCCG
CGAAAAATGGCAAACGACGGACGCTGTCGGTGTCCAAGCCGCCTCCGACGAGTGCTGACGTGACT
TCAGAGGCAATGGTGGCCATCGTAGCCATCCCCAACTACTTTACT
Found at i:141487 original size:15 final size:15
Alignment explanation
Indices: 141464--141506 Score: 68
Period size: 15 Copynumber: 2.9 Consensus size: 15
141454 TACCCAATGT
*
141464 CCTCGCGTCCCGTGC
1 CCTCTCGTCCCGTGC
141479 CCTCTCGTCCCGTGC
1 CCTCTCGTCCCGTGC
*
141494 CCTCTCTTCCCGT
1 CCTCTCGTCCCGT
141507 TGACCAACTT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 26 1.00
ACGTcount: A:0.00, C:0.53, G:0.19, T:0.28
Consensus pattern (15 bp):
CCTCTCGTCCCGTGC
Left flanking sequence: Indices 140964 -- 141463
AGGAGTCGTATGGTGTAGAGAGCCACTCTCCGCCGATGGTTTTAGCCCGTTTTGGAGAGCTGCAC
GACGCTGTAGTACGTCATCCACTGGTAAAAAATAGAAGCTTTGGTTCCACTGGTGATGGGACTAG
TGTCAGGGGCAAGCTGTTAGAGATAAGCTGTTAGAGGTTTTAATGCCTTGCATCGGCCAATTCTG
GTACGAATTGGCTGTTCCATGGGAACCCGGACCCCACGGGTTCCAAAGTGAGCGTTGATGAAATG
ATAGCCAAAGCCCGTGACGAGTTAAGTAACAACAAATATTTTACTTCGTTTCCCTACGTGGCTCT
GGTGGTCTGAACCTTGAAGCTGGGCCCATCATCTCAATCGACGGCTAATTCTAGCCATCTTCTAT
TTTCTTTACTGGCAGAGTACATCTCACACCAACCAGTGACATCATCCCCAACCAACCATGAAACA
CACCCCATATTCAAAAATCCATATCATCTACCCACTACCCAATGT
Right flanking sequence: Indices 141507 -- 142006
TGACCAACTTCCCCCGTTATCTCCATCTCCCATCTCCACGTGACCTCCGTCACATGGCCCCATCG
CGATGAGACAAAAATCCATCGCAGCTAATCACGGTATGGGTGAACTCAAGAAGAGCGAGGAGGCG
TTCCCGCGTGGGGGAGGCACCGCGTTGACTCCCCTAGAGCTTAAGGAGATTCACAACGAGGCCGC
CCGTGACGTGTTGTTTGAGACCCAGGCGGCTCCGCTGAAAAAGCGTCCGGCAAAGGCGCTCCCAG
CCAAGAAGAAGGCGAAAAAGGCCGCTGCCGAGGCCGACGAAGACGAGGCCATGGCTGTCGAGCAC
TTGTGGCCCCGCAACTTGGTGCCTGGCACCCCGGTGCTCGGCCAGGTGGCCCAGATCACCCGTCT
TGAGCTTGCCCTCGCCATCGGGGACAACCTCATCGGGTACGTGCCCATCACCCAGATCTCGCCCC
AGGTGACTGCGGCGGTTGAGGCGTACGAGCAGGAGGGTGGCGAAG
Found at i:142403 original size:9 final size:9
Alignment explanation
Indices: 142391--142449 Score: 84
Period size: 9 Copynumber: 6.6 Consensus size: 9
142381 GAGAAGGCCG
142391 AGGACAAGA
1 AGGACAAGA
142400 AGGA-ACAGA
1 AGGACA-AGA
142409 AGGACAAGA
1 AGGACAAGA
142418 AGGACAAGA
1 AGGACAAGA
142427 AGGACAAGA
1 AGGACAAGA
* *
142436 AAGACAACA
1 AGGACAAGA
142445 AGGAC
1 AGGAC
142450 GCCAAGGACA
Statistics
Matches: 45, Mismatches: 3, Indels: 4
0.87 0.06 0.08
Matches are distributed among these distances:
8 1 0.02
9 43 0.96
10 1 0.02
ACGTcount: A:0.56, C:0.14, G:0.31, T:0.00
Consensus pattern (9 bp):
AGGACAAGA
Left flanking sequence: Indices 141891 -- 142390
CCGTCTTGAGCTTGCCCTCGCCATCGGGGACAACCTCATCGGGTACGTGCCCATCACCCAGATCT
CGCCCCAGGTGACTGCGGCGGTTGAGGCGTACGAGCAGGAGGGTGGCGAAGACGATGAAGACGCC
CGCTTGCCCGAATTGACCAAGCTTTTCAAGGTGGGCCAGTGGGTGATGGCCCGGGTCACCACCAA
CACCATCACCGACAAGAGTGCTGCGAAGAAGACGCTTGAAATGACGATCGAGCCCGAGGCCGTCA
ACCAGGGGATCGAGCCCGTGGACGTGGCCGCCCCCAACGTCATCCAGTGCTCGGTGGCCCTGGTG
GAGGACCACGGTTACATCATGACCCCGGGCATCGGGGCGCTCTCGGCATTCATCCCGCACAAACA
GGTGGCTGAGCCGCTTGCCGTGGGCTCGGTGGTGATGTGTGAAGTGCTGCTGGCCACCGCCAGAG
CCGTCACCGTGCGCCCGGCCCGCGGGGTCGAGGCCGAGAAGGCCG
Right flanking sequence: Indices 142450 -- 142949
GCCAAGGACACCAACGCCGTGGTCACCATCTCGTCTGTTGACGCGATCCACCCCGGTCAGGTGAT
CGATGCCCTTGTCGCCGAGGTGTCCGACCAGGGCCTCGGGCTCCGGGCGTTCGGGCTCGTGGATG
CGCTGGTCTCGTACGCTCAGATGCACTGCTGGACGGAGTTGGCGGCCCAGTTTGGCGTGGGCAAC
CCCGTCAAGGCCCGTATTTTGGCGGTGCTCACCAAGAACGGGCAAAAGAAGCTCGTGTTGTCGCT
TCTCCCGCAGGTGCTCGGGCTCAACAACGAGCTTGGCACCGACACTGCCCTCGAGGCGTTCTCGT
ACGGCCACAAGTTCGACGAGGTGCCCGTGGTGGCAGTCGACGACGACTTTTTGTACGTCAAGCTC
GGAGCCGGCTACTACGGCGAGGTGCACCGGTCGCAGACCGACGCCAAGCACGTGGGTGTGGTGGG
TATCGAGTACCGTGTGGGCACCGCCCACCCCGCGCGTGTCACCGG
Found at i:149477 original size:19 final size:20
Alignment explanation
Indices: 149446--149483 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
149436 CCGACCCCGA
149446 CGCCGTCCGCCAC-CTCCCC
1 CGCCGTCCGCCACGCTCCCC
149465 CGCCG-CCGCCCACGCTCCC
1 CGCCGTCCG-CCACGCTCCC
149484 GCTCGCCGCT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
18 3 0.18
19 9 0.53
20 5 0.29
ACGTcount: A:0.05, C:0.68, G:0.18, T:0.08
Consensus pattern (20 bp):
CGCCGTCCGCCACGCTCCCC
Left flanking sequence: Indices 148946 -- 149445
TGGGTGTTGACACTTCTCCTAGGACACTGCTCTCACGACACCGGTTTCCCAAAGTGTCTCCGCGT
CACCCTTTTTCTCCACAAGTCGCTTTGTTTAGACACTGCTTTTCACCTTCCCCGTTGGGTAGTCG
TGACCAGGTGAAACGGAACCCCGGAAAACACCTCTGGCGGCGGGTCAATCGCCCACCGCGCCCTG
GCAGCAGCCTCGTAGCGTCGTAGCCACCGTAGGCGCCCCCAATCAAGCCCCTACAAGCCCCCATC
GCGGACCCCTGCTAAACCCCGACGGGGTCCCCCCGGTTAGCCGCGCCGCATCGCGGCCCAGAGAC
CAGCGGAAGCGAGGGTGGCGGGCCTCGTGCTGCTACAACCGCGGTGGAGCGCCTCCCCTGTCCCC
TGCCTGGCCCCTCCCGCTCCCCTGGAAGCTCCGGTGTCTGCGTGGAAAAAGAAAACAAGGCCCAC
CAGCGGGCCGCCAGCGGGCCCCCCCGCCAAAACCACCGACCCCGA
Right flanking sequence: Indices 149484 -- 149983
GCTCGCCGCTGGCCGCCACCACACCGCCGTGGCCGTCTCCCCTCTTCCTCATGCTATTTGTCTTA
ATCACATGCCTTCCTGCACACAGCCCCCGGGCTCCATTAAAAACCCTCCAAATCCATCGGTGGCC
AGCGACATGACCCTGACAAAACGCAAGTTGTCGTTCAACGACGACAGCGAGCGGCTCCTGGCCAC
GCCGGAGCCCATCCACACCGACGTTGTCGACGCCGCCGAGGCGTTGACCCAGCTACACACCGTGA
CCCCGCTGGTGACCCCGCCTCCTCCCCAGCTACCATCGGTGCACCCGCTCATCCTGAAGGTGCTG
CTGCTTCTGGACCACCCCATCGTGCTGGGCGCGGTAAAGTACTACGAGCTGCTGAAGCGGGCGTA
CCCGCACTTCAACTACGCCGCGAAAATGGTGGAGCGGGCGGCGGCGCCGGTGGTGAACAAAATCG
AGGTCAACCTCAACTCGCGCCACCAGTCGCGCATGGAGGCAGCCC
Found at i:150995 original size:13 final size:13
Alignment explanation
Indices: 150977--151037 Score: 83
Period size: 13 Copynumber: 4.9 Consensus size: 13
150967 GATACCGTTT
150977 CCTACGAGGTCAG
1 CCTACGAGGTCAG
150990 CCTACGAGGTCAG
1 CCTACGAGGTCAG
*
151003 CCT--GATGTCAG
1 CCTACGAGGTCAG
151014 -CTACGAGGTCAG
1 CCTACGAGGTCAG
*
151026 CTTACGAGGTCA
1 CCTACGAGGTCA
151038 ATTCCCACGA
Statistics
Matches: 42, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
10 2 0.05
11 7 0.17
12 7 0.17
13 26 0.62
ACGTcount: A:0.23, C:0.28, G:0.30, T:0.20
Consensus pattern (13 bp):
CCTACGAGGTCAG
Left flanking sequence: Indices 150477 -- 150976
GCTGGTGTCGCTGCAGCCCCCGCAGCTGCAGCAGGGGCTGGGAGACCGCATTTTTGTGTTTGCGA
AGGAGCTGTTGGAGATGATTGGCAAGTTGACGCTGGTGTTGAACCAGCAGTTGGAGATGGCCGAG
CTGTGGATCGGCGACGAGGAGCCCGAGGACGACGGGTTTGCCACCCCGCGTGCCCACACCCCTGG
GAACACCCCGGGAGCGACGACGCCAGGGCCCGTGTACAAGGACTTGTCGCGGGCGGACTCGCAGC
TGACGCTCGCCACGGCGCTGCTGACGCCGCCCAAACGCATTTCCATCGACGACTTGACCCAGTCG
TGACTGCATTATGTTCATAGACGGCGAGCAATACACGGCCTAGCTGGAGGGGGTGTGGTTCTGGT
TGACTCGTGCGGTTTACCCAGGGGTTTACAAGGCTAGTTTGGTTTACAGGTGGCCATGATTTACA
TGCTTACCTGGTGGCCACTCTCGTGATTGGAAGAAGATACCGTTT
Right flanking sequence: Indices 151038 -- 151537
ATTCCCACGACGCTTGCATCGCTAACCACTTCCTACTACGGCTGGCTGTCCTACCCCACCCCACA
CTCTGCTCCACCAGATGCCTGCAGCATACGACATTGCTAGGTTGCTTAGATACACACTAGATTCA
GGACAACACATTGTAGACCCGTCGAGCGGACTTCCACCGGGGTGTAATTGCCGTGTCGGTCGTGC
ATATACGCTGTGCGCCGTGCGCGATCACATGTGCAAATGTGTGGGGTTTGCAGCGGGGTACTGAG
GCCTCCGTGGTTGGCCACGCTCTAGCAAGAGGATGTCGGTGTCGGGCGGGGTGGTGGCTTGTGCA
CGGCGTTCGCCGGACACGGCTCCACGCCCAAAGCAATCTCCGCACCCCGCTTGTGGCGTGGTTGG
TCACCTTCTGCGCGTTACGGGTGTAGTGCCAGACAATGGTTAGTTCCATCGGAGGTGGGGTACGT
CCACCGGCGTCGGAGCTCGGGGCTACGGGAAGCAAACACCAGCGC
Found at i:161243 original size:10 final size:10
Alignment explanation
Indices: 161228--161350 Score: 163
Period size: 10 Copynumber: 12.9 Consensus size: 10
161218 GTGGTGAGGG
161228 GAGTGGTGAA
1 GAGTGGTGAA
161238 GAGTGGTGAA
1 GAGTGGTGAA
161248 GAGTGGTGAA
1 GAGTGGTGAA
161258 GAGTGGTGAA
1 GAGTGGTGAA
161268 GAGTGGTGAA
1 GAGTGGTGAA
161278 GAGT-GTGAA
1 GAGTGGTGAA
161287 GAGTGGTGAA
1 GAGTGGTGAA
161297 GAGT-G-G-A
1 GAGTGGTGAA
161304 GAGT-G-G-A
1 GAGTGGTGAA
161311 GAGTGGT-AA
1 GAGTGGTGAA
*
161320 GAGTGATGTAA
1 GAGTGGTG-AA
161331 GAGTGGTGTAA
1 GAGTGGTG-AA
161342 GAGTGGTGA
1 GAGTGGTGA
161351 GTGGTGTAAG
Statistics
Matches: 105, Mismatches: 2, Indels: 12
0.88 0.02 0.10
Matches are distributed among these distances:
7 12 0.11
8 2 0.02
9 17 0.16
10 54 0.51
11 20 0.19
ACGTcount: A:0.30, C:0.00, G:0.49, T:0.21
Consensus pattern (10 bp):
GAGTGGTGAA
Left flanking sequence: Indices 160728 -- 161227
GGTGGCGCAGATGCTTGCTGACTTGAAGACCAGTGACGACACCACCCAGAAGCGCATTTTGGGGG
TGGTTGCGCCTCTCACGAAAAACAAGCGCGAGCTTGTCGAGTACTACCCGTGGTTAGGAGACGGT
GCGCGCCAGCGGTTGTTCAACGCGTTGGAGGACGACAAGCGGAGCGACGACACCCCCCAGGAGGA
GGTGTCCTCGTATCTCCAGAAGCGGGTTCCGGAGGAGGTGGAGAACCCCGAGTTCAAGCGGTACT
TCGAGCTGCTTGTGGACTTGCACGAGCGCGACGAGCTGTTGCGGGCCAACCCCGAGTTCTTGGAG
TGGTTGGCGAGCCAGGTGCAGAAGCGCCAGGGCGACGGGCTGGAGTTTAGCCACGAGATGTTGCG
GGCCCGCCACGAGGTGTTCGGCAACCCCATGGGGATGCGCAAGGCGATGGCCGACGAGCTTTAGA
GTATCAGGAATACAATAGAACAGTAAGAGAGTAGTGTGGTGAGGG
Right flanking sequence: Indices 161351 -- 161850
GTGGTGTAAGAGTAGTGTAAGTGTGGTTTGAGAGTGGTTTGAGAGAAGACCCAAGTTGGGGTTCC
GGAGATTGGTTATAGTGGTTCAGTTAGGACGATTGACTATGGAAACTTCGCTACGTACGACATGC
GACTTTATGCCATGGAACAAGACTGGGACGCGAGGGTATCAAATGCGACTTGCCACAATGCCATG
CAACGTAGGCAGCTTATGTCTTTTTGGCCAGAGCAACCGCGAGAGCGATGTAATTGTAGCTTCCA
CCCGAGAACCTTCAGTGAGCCACCAGTGAGCCACCAGAGCCACCAGAGAGCCACCACCAACTCAC
CCGTTCACTTCGAAACCACCTTACATTCCCGAACTGAGACACTACCATTCCTAGTAATATCGTTC
GATCCCTCGCTTACAATCACCACACTACCATCGTTCGATCGACGCAGGTCCAGGTCCCCCTTCCC
GTTTGAGTTTCCCCTCCAGGACCCCGCAACGGCCAGATCTCCGCA
Found at i:161376 original size:29 final size:29
Alignment explanation
Indices: 161310--161377 Score: 91
Period size: 29 Copynumber: 2.3 Consensus size: 29
161300 TGGAGAGTGG
*
161310 AGAGTGGTAAGAGTGATGTAAGAGTGGTGTA
1 AGAGTGGT--GAGTGATGTAAGAGTAGTGTA
*
161341 AGAGTGGTGAGTGGTGTAAGAGTAGTGTA
1 AGAGTGGTGAGTGATGTAAGAGTAGTGTA
*
161370 AGTGTGGT
1 AGAGTGGT
161378 TTGAGAGTGG
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
29 26 0.76
31 8 0.24
ACGTcount: A:0.28, C:0.00, G:0.44, T:0.28
Consensus pattern (29 bp):
AGAGTGGTGAGTGATGTAAGAGTAGTGTA
Left flanking sequence: Indices 160810 -- 161309
AAAAACAAGCGCGAGCTTGTCGAGTACTACCCGTGGTTAGGAGACGGTGCGCGCCAGCGGTTGTT
CAACGCGTTGGAGGACGACAAGCGGAGCGACGACACCCCCCAGGAGGAGGTGTCCTCGTATCTCC
AGAAGCGGGTTCCGGAGGAGGTGGAGAACCCCGAGTTCAAGCGGTACTTCGAGCTGCTTGTGGAC
TTGCACGAGCGCGACGAGCTGTTGCGGGCCAACCCCGAGTTCTTGGAGTGGTTGGCGAGCCAGGT
GCAGAAGCGCCAGGGCGACGGGCTGGAGTTTAGCCACGAGATGTTGCGGGCCCGCCACGAGGTGT
TCGGCAACCCCATGGGGATGCGCAAGGCGATGGCCGACGAGCTTTAGAGTATCAGGAATACAATA
GAACAGTAAGAGAGTAGTGTGGTGAGGGGAGTGGTGAAGAGTGGTGAAGAGTGGTGAAGAGTGGT
GAAGAGTGGTGAAGAGTGTGAAGAGTGGTGAAGAGTGGAGAGTGG
Right flanking sequence: Indices 161378 -- 161877
TTGAGAGTGGTTTGAGAGAAGACCCAAGTTGGGGTTCCGGAGATTGGTTATAGTGGTTCAGTTAG
GACGATTGACTATGGAAACTTCGCTACGTACGACATGCGACTTTATGCCATGGAACAAGACTGGG
ACGCGAGGGTATCAAATGCGACTTGCCACAATGCCATGCAACGTAGGCAGCTTATGTCTTTTTGG
CCAGAGCAACCGCGAGAGCGATGTAATTGTAGCTTCCACCCGAGAACCTTCAGTGAGCCACCAGT
GAGCCACCAGAGCCACCAGAGAGCCACCACCAACTCACCCGTTCACTTCGAAACCACCTTACATT
CCCGAACTGAGACACTACCATTCCTAGTAATATCGTTCGATCCCTCGCTTACAATCACCACACTA
CCATCGTTCGATCGACGCAGGTCCAGGTCCCCCTTCCCGTTTGAGTTTCCCCTCCAGGACCCCGC
AACGGCCAGATCTCCGCAACGGCCTCCACCCCGAGCATTCACAAG
Found at i:161639 original size:11 final size:11
Alignment explanation
Indices: 161623--161666 Score: 65
Period size: 11 Copynumber: 4.2 Consensus size: 11
161613 CGAGAACCTT
161623 CAGTGAGCCAC
1 CAGTGAGCCAC
161634 CAGTGAGCCAC
1 CAGTGAGCCAC
161645 CA--GAGCCAC
1 CAGTGAGCCAC
*
161654 CAGAGAGCCAC
1 CAGTGAGCCAC
161665 CA
1 CA
161667 CCAACTCACC
Statistics
Matches: 31, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
9 9 0.29
11 22 0.71
ACGTcount: A:0.32, C:0.39, G:0.25, T:0.05
Consensus pattern (11 bp):
CAGTGAGCCAC
Left flanking sequence: Indices 161123 -- 161622
GCCACGAGGTGTTCGGCAACCCCATGGGGATGCGCAAGGCGATGGCCGACGAGCTTTAGAGTATC
AGGAATACAATAGAACAGTAAGAGAGTAGTGTGGTGAGGGGAGTGGTGAAGAGTGGTGAAGAGTG
GTGAAGAGTGGTGAAGAGTGGTGAAGAGTGTGAAGAGTGGTGAAGAGTGGAGAGTGGAGAGTGGT
AAGAGTGATGTAAGAGTGGTGTAAGAGTGGTGAGTGGTGTAAGAGTAGTGTAAGTGTGGTTTGAG
AGTGGTTTGAGAGAAGACCCAAGTTGGGGTTCCGGAGATTGGTTATAGTGGTTCAGTTAGGACGA
TTGACTATGGAAACTTCGCTACGTACGACATGCGACTTTATGCCATGGAACAAGACTGGGACGCG
AGGGTATCAAATGCGACTTGCCACAATGCCATGCAACGTAGGCAGCTTATGTCTTTTTGGCCAGA
GCAACCGCGAGAGCGATGTAATTGTAGCTTCCACCCGAGAACCTT
Right flanking sequence: Indices 161667 -- 162166
CCAACTCACCCGTTCACTTCGAAACCACCTTACATTCCCGAACTGAGACACTACCATTCCTAGTA
ATATCGTTCGATCCCTCGCTTACAATCACCACACTACCATCGTTCGATCGACGCAGGTCCAGGTC
CCCCTTCCCGTTTGAGTTTCCCCTCCAGGACCCCGCAACGGCCAGATCTCCGCAACGGCCTCCAC
CCCGAGCATTCACAAGCCCGCTGCACGACCCCAGACCAGGCCCGACAACGGCGTTTGTCCACCCG
ACCCGCATACCCCAAGTGGGGAAGCCACCTTTTCGCGCGCAAAGGTGAACCGAGGTTATGCAAGA
TAGCGGCTACGTCAACGTTCACAGGTAATTGTAGTGTGACAGGGTCCGAGTCGGGCTCCACGGTG
TCGGTGGTCGGCCAAAACGGGTCGGGAAACCAACCCATCGGGGGCCGTCTACGCGGACACTGGTC
CCGATGGACCACTCTGCGCCGAGCAGCCGACGGACCAGGCTCGGC
Found at i:161652 original size:20 final size:20
Alignment explanation
Indices: 161627--161666 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
161617 AACCTTCAGT
*
161627 GAGCCACCAGTGAGCCACCA
1 GAGCCACCAGAGAGCCACCA
161647 GAGCCACCAGAGAGCCACCA
1 GAGCCACCAGAGAGCCACCA
161667 CCAACTCACC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.33, C:0.40, G:0.25, T:0.03
Consensus pattern (20 bp):
GAGCCACCAGAGAGCCACCA
Left flanking sequence: Indices 161127 -- 161626
CGAGGTGTTCGGCAACCCCATGGGGATGCGCAAGGCGATGGCCGACGAGCTTTAGAGTATCAGGA
ATACAATAGAACAGTAAGAGAGTAGTGTGGTGAGGGGAGTGGTGAAGAGTGGTGAAGAGTGGTGA
AGAGTGGTGAAGAGTGGTGAAGAGTGTGAAGAGTGGTGAAGAGTGGAGAGTGGAGAGTGGTAAGA
GTGATGTAAGAGTGGTGTAAGAGTGGTGAGTGGTGTAAGAGTAGTGTAAGTGTGGTTTGAGAGTG
GTTTGAGAGAAGACCCAAGTTGGGGTTCCGGAGATTGGTTATAGTGGTTCAGTTAGGACGATTGA
CTATGGAAACTTCGCTACGTACGACATGCGACTTTATGCCATGGAACAAGACTGGGACGCGAGGG
TATCAAATGCGACTTGCCACAATGCCATGCAACGTAGGCAGCTTATGTCTTTTTGGCCAGAGCAA
CCGCGAGAGCGATGTAATTGTAGCTTCCACCCGAGAACCTTCAGT
Right flanking sequence: Indices 161667 -- 162166
CCAACTCACCCGTTCACTTCGAAACCACCTTACATTCCCGAACTGAGACACTACCATTCCTAGTA
ATATCGTTCGATCCCTCGCTTACAATCACCACACTACCATCGTTCGATCGACGCAGGTCCAGGTC
CCCCTTCCCGTTTGAGTTTCCCCTCCAGGACCCCGCAACGGCCAGATCTCCGCAACGGCCTCCAC
CCCGAGCATTCACAAGCCCGCTGCACGACCCCAGACCAGGCCCGACAACGGCGTTTGTCCACCCG
ACCCGCATACCCCAAGTGGGGAAGCCACCTTTTCGCGCGCAAAGGTGAACCGAGGTTATGCAAGA
TAGCGGCTACGTCAACGTTCACAGGTAATTGTAGTGTGACAGGGTCCGAGTCGGGCTCCACGGTG
TCGGTGGTCGGCCAAAACGGGTCGGGAAACCAACCCATCGGGGGCCGTCTACGCGGACACTGGTC
CCGATGGACCACTCTGCGCCGAGCAGCCGACGGACCAGGCTCGGC
Found at i:164249 original size:10 final size:10
Alignment explanation
Indices: 164230--164294 Score: 51
Period size: 10 Copynumber: 6.0 Consensus size: 10
164220 TGTATGTAGT
*
164230 TTTGCGGCCA
1 TTTGCAGCCA
164240 TTTGCAGCCA
1 TTTGCAGCCA
164250 CTTTTTG-AGCCA
1 ---TTTGCAGCCA
164262 TTTGCAGCCA
1 TTTGCAGCCA
*
164272 CTTTTTGGAGCCA
1 ---TTTGCAGCCA
164285 TTTGCAGCCA
1 TTTGCAGCCA
164295 CCTTCTTGCA
Statistics
Matches: 45, Mismatches: 3, Indels: 14
0.73 0.05 0.23
Matches are distributed among these distances:
9 4 0.09
10 23 0.51
12 5 0.11
13 13 0.29
ACGTcount: A:0.17, C:0.28, G:0.22, T:0.34
Consensus pattern (10 bp):
TTTGCAGCCA
Left flanking sequence: Indices 163730 -- 164229
AGACCATCTTCTCCGAGGAGGGTTTGTTGCCCGAGTGGTTGGACGACTTGGACAAGGTTGTCGGC
CGGTTGAACACCATCCGCCAGAAGTTGTACGACAACTTGGACAAGCTGGCCACCAACTGGGACCA
CTTGTTGAAGCAGCGCGGTATGTTTGTCTACACCGGGTTGTCGCAGGAGCAGATGGTGCGTTTGC
GCAACGAGTACTCGGTGTACGCCACTGAGGACGGCCGGTTCTCCATCTCCGGGATCAACGACAAC
AACGTTGCCTACTTGGCCAACGCCATTAACGAGGTGGTCAAGACGACTAAAAAGTAATGGATTAA
TGATTATGATAGAGCAATATATGCGAAAGAGTACGAAACGTAGTGTGGTCGGGTATGGGAGGTTT
GAAAGCCGTTTGACCGAGTTGATATACCAGAGCTTTTACGAAGCAGCTGTTTCTAGAAACCAGGT
TGCAAGACCAGATGTGGTACACGTTACTTCTATTATGTATGTAGT
Right flanking sequence: Indices 164295 -- 164794
CCTTCTTGCAGCCATTGCAACCAACAACTAGGTTTGTGCAATAAGGCAGCGTTCCAACACTTACG
CGAGAGGCTTTCCCATTCTCTTGGACTCGTCCTCTTCCTTCGCTGTCTTCTCCTTTCCGTGGGCA
ACAAACGAGTTGTAACCCCAGTTGGTCACACTAAAGAAGTACTGGCGTTGGTAGTGCTCCAACTC
GGTGCCATTGCGCAACCGCTCAGGCAAGTCGGGGTTGGACGTGTAGTACCGGGCGAACGCCACCA
AAGTACGGTCGTTGGCGGTGTCAGCAAGCACCTCCGACCAGTCAGGCATGTCGTACGAGTACAGA
GCCCGCACCAAAGTGCCTCGCCACACCGCAGGCACCCAGTCCATGGGCTGCGTCGACACGTCGTC
CGTCTGGTCGGAACGAGGACCCACCACAGACACGTACGCAAGCTGGTTGCCCTTGTCGGCCCGGT
GCTGAAGCTCACCAAGGACGTAGCCATACTGCACCAGCGGGTGGA
Found at i:164283 original size:13 final size:13
Alignment explanation
Indices: 164240--164308 Score: 62
Period size: 10 Copynumber: 5.8 Consensus size: 13
164230 TTTGCGGCCA
164240 TTTGCAGCCACTT
1 TTTGCAGCCACTT
164253 TTTG-AGCCA---
1 TTTGCAGCCACTT
164262 TTTGCAGCCACTT
1 TTTGCAGCCACTT
*
164275 TTTGGAGCCA---
1 TTTGCAGCCACTT
164285 TTTGCAGCCACCTT
1 TTTGCAGCCA-CTT
*
164299 CTTGCAGCCA
1 TTTGCAGCCA
164309 TTGCAACCAA
Statistics
Matches: 45, Mismatches: 3, Indels: 15
0.71 0.05 0.24
Matches are distributed among these distances:
9 4 0.09
10 14 0.31
12 5 0.11
13 13 0.29
14 9 0.20
ACGTcount: A:0.17, C:0.30, G:0.19, T:0.33
Consensus pattern (13 bp):
TTTGCAGCCACTT
Left flanking sequence: Indices 163740 -- 164239
CTCCGAGGAGGGTTTGTTGCCCGAGTGGTTGGACGACTTGGACAAGGTTGTCGGCCGGTTGAACA
CCATCCGCCAGAAGTTGTACGACAACTTGGACAAGCTGGCCACCAACTGGGACCACTTGTTGAAG
CAGCGCGGTATGTTTGTCTACACCGGGTTGTCGCAGGAGCAGATGGTGCGTTTGCGCAACGAGTA
CTCGGTGTACGCCACTGAGGACGGCCGGTTCTCCATCTCCGGGATCAACGACAACAACGTTGCCT
ACTTGGCCAACGCCATTAACGAGGTGGTCAAGACGACTAAAAAGTAATGGATTAATGATTATGAT
AGAGCAATATATGCGAAAGAGTACGAAACGTAGTGTGGTCGGGTATGGGAGGTTTGAAAGCCGTT
TGACCGAGTTGATATACCAGAGCTTTTACGAAGCAGCTGTTTCTAGAAACCAGGTTGCAAGACCA
GATGTGGTACACGTTACTTCTATTATGTATGTAGTTTTGCGGCCA
Right flanking sequence: Indices 164309 -- 164808
TTGCAACCAACAACTAGGTTTGTGCAATAAGGCAGCGTTCCAACACTTACGCGAGAGGCTTTCCC
ATTCTCTTGGACTCGTCCTCTTCCTTCGCTGTCTTCTCCTTTCCGTGGGCAACAAACGAGTTGTA
ACCCCAGTTGGTCACACTAAAGAAGTACTGGCGTTGGTAGTGCTCCAACTCGGTGCCATTGCGCA
ACCGCTCAGGCAAGTCGGGGTTGGACGTGTAGTACCGGGCGAACGCCACCAAAGTACGGTCGTTG
GCGGTGTCAGCAAGCACCTCCGACCAGTCAGGCATGTCGTACGAGTACAGAGCCCGCACCAAAGT
GCCTCGCCACACCGCAGGCACCCAGTCCATGGGCTGCGTCGACACGTCGTCCGTCTGGTCGGAAC
GAGGACCCACCACAGACACGTACGCAAGCTGGTTGCCCTTGTCGGCCCGGTGCTGAAGCTCACCA
AGGACGTAGCCATACTGCACCAGCGGGTGGACAGCGTTGGTATCT
Found at i:164313 original size:23 final size:23
Alignment explanation
Indices: 164229--164310 Score: 121
Period size: 22 Copynumber: 3.6 Consensus size: 23
164219 ATGTATGTAG
*
164229 TTTTGCGGCCATTTGCAGCCACT
1 TTTTGCAGCCATTTGCAGCCACT
164252 TTTTG-AGCCATTTGCAGCCACT
1 TTTTGCAGCCATTTGCAGCCACT
*
164274 TTTTGGAGCCATTTGCAGCCACCT
1 TTTTGCAGCCATTTGCAGCCA-CT
*
164298 TCTTGCAGCCATT
1 TTTTGCAGCCATT
164311 GCAACCAACA
Statistics
Matches: 54, Mismatches: 3, Indels: 3
0.90 0.05 0.05
Matches are distributed among these distances:
22 21 0.39
23 20 0.37
24 13 0.24
ACGTcount: A:0.16, C:0.29, G:0.20, T:0.35
Consensus pattern (23 bp):
TTTTGCAGCCATTTGCAGCCACT
Left flanking sequence: Indices 163729 -- 164228
GAGACCATCTTCTCCGAGGAGGGTTTGTTGCCCGAGTGGTTGGACGACTTGGACAAGGTTGTCGG
CCGGTTGAACACCATCCGCCAGAAGTTGTACGACAACTTGGACAAGCTGGCCACCAACTGGGACC
ACTTGTTGAAGCAGCGCGGTATGTTTGTCTACACCGGGTTGTCGCAGGAGCAGATGGTGCGTTTG
CGCAACGAGTACTCGGTGTACGCCACTGAGGACGGCCGGTTCTCCATCTCCGGGATCAACGACAA
CAACGTTGCCTACTTGGCCAACGCCATTAACGAGGTGGTCAAGACGACTAAAAAGTAATGGATTA
ATGATTATGATAGAGCAATATATGCGAAAGAGTACGAAACGTAGTGTGGTCGGGTATGGGAGGTT
TGAAAGCCGTTTGACCGAGTTGATATACCAGAGCTTTTACGAAGCAGCTGTTTCTAGAAACCAGG
TTGCAAGACCAGATGTGGTACACGTTACTTCTATTATGTATGTAG
Right flanking sequence: Indices 164311 -- 164810
GCAACCAACAACTAGGTTTGTGCAATAAGGCAGCGTTCCAACACTTACGCGAGAGGCTTTCCCAT
TCTCTTGGACTCGTCCTCTTCCTTCGCTGTCTTCTCCTTTCCGTGGGCAACAAACGAGTTGTAAC
CCCAGTTGGTCACACTAAAGAAGTACTGGCGTTGGTAGTGCTCCAACTCGGTGCCATTGCGCAAC
CGCTCAGGCAAGTCGGGGTTGGACGTGTAGTACCGGGCGAACGCCACCAAAGTACGGTCGTTGGC
GGTGTCAGCAAGCACCTCCGACCAGTCAGGCATGTCGTACGAGTACAGAGCCCGCACCAAAGTGC
CTCGCCACACCGCAGGCACCCAGTCCATGGGCTGCGTCGACACGTCGTCCGTCTGGTCGGAACGA
GGACCCACCACAGACACGTACGCAAGCTGGTTGCCCTTGTCGGCCCGGTGCTGAAGCTCACCAAG
GACGTAGCCATACTGCACCAGCGGGTGGACAGCGTTGGTATCTCC
Found at i:165932 original size:6 final size:6
Alignment explanation
Indices: 165921--165982 Score: 52
Period size: 6 Copynumber: 10.3 Consensus size: 6
165911 CTCCACTTAG
* ** ** * **
165921 ACCTCC ACCTCC ACCTCC ACTTAG ACCTCC ACCTAG ACCTCC ACTTAG
1 ACCTCC ACCTCC ACCTCC ACCTCC ACCTCC ACCTCC ACCTCC ACCTCC
165969 ACCTCC ACCTCC AC
1 ACCTCC ACCTCC AC
165983 TTAGACTCCC
Statistics
Matches: 40, Mismatches: 16, Indels: 0
0.71 0.29 0.00
Matches are distributed among these distances:
6 40 1.00
ACGTcount: A:0.23, C:0.53, G:0.05, T:0.19
Consensus pattern (6 bp):
ACCTCC
Left flanking sequence: Indices 165421 -- 165920
TCCGTGGGCACATGGTCCTGGGAGTTGCGGACCCGGGTCGTAGGAGCGTATGCTACGCGGTGTGC
AAGCTGGTTGCGACCAACCTTGATCGGTTGGAAAACCTTGGTGTCGCCAAGTGGTTTGTTAGTAG
CCATGCGTCGGAGGAACTGTTTCATTGATGAGTGCCCCCGCAGACTACTTTATATATTTGTCTCG
GTTACTAAGCATTTCTTAGCCGTCGGCAGCGTGCATAACGGAGAGCAGTTGCTAGCGCGGGCACG
TCGGGTTTGTCCCGATGGGGATGCAGGGTGCATACCGAGTGGAAGGTAGATGCGCAGGGTGAATT
TACAATAGCATCCCTTGTGGTAGCGGAGGAATGTTCTGGACCGGTCGCAAAGCACCTAATTGGGT
TCGCTTAGGACCCCTTCGGCATAATGCGATGCAAAGTGACCGTTGGAAACGAGTTTACGTGGGGA
GATGTGAATCAATGAGTCAGTCGTAGACCCTGGACCTCCACTTAG
Right flanking sequence: Indices 165983 -- 166482
TTAGACTCCCACTTAAACCTCCACCTAGATCACCACTCCCACCCCACCTCACCAGAACTAATACT
TCAACATTAATACAAAACAATTACATATTTTACACCGCGTGGCCACTGTAGTTGCCTGAGATCAA
GTTACGCACCACAGGCACCTCGTTCCCGCCAGCAAGCACGGTAACGTTCTTCCCCGGAGGCTCGT
GGATCTGGAACTTGATCTGGACCCCCAGCTCGTGCTCGGAAGCCACGCCAGAGGTCATGAACCGC
GCCATGAGCTTCTCCTCGGCAGCACCCGAGCCGCCAAGCGCCAACGGGCTGGTGTAGCGCCACGT
CAACCGGTTTTTGTCCTTGTTGAACGACCCGTGCGGCGACAGCTTGGCCCCCAGCACCTCGACGT
CGTTGTTCAACGCCACGGTGATCACGAGGTTCTCCACCACGATCTTCTCCGTCACCAGCGGGTCG
GGCCGCACCACGATGATGAGCAGGGCCTGGTGGGCCTCGTACTTC
Found at i:165941 original size:24 final size:24
Alignment explanation
Indices: 165909--165982 Score: 130
Period size: 24 Copynumber: 3.1 Consensus size: 24
165899 TAGACCCTGG
165909 ACCTCCACTTAGACCTCCACCTCC
1 ACCTCCACTTAGACCTCCACCTCC
**
165933 ACCTCCACTTAGACCTCCACCTAG
1 ACCTCCACTTAGACCTCCACCTCC
165957 ACCTCCACTTAGACCTCCACCTCC
1 ACCTCCACTTAGACCTCCACCTCC
165981 AC
1 AC
165983 TTAGACTCCC
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 46 1.00
ACGTcount: A:0.23, C:0.51, G:0.05, T:0.20
Consensus pattern (24 bp):
ACCTCCACTTAGACCTCCACCTCC
Left flanking sequence: Indices 165409 -- 165908
TGCAACATCAAGTCCGTGGGCACATGGTCCTGGGAGTTGCGGACCCGGGTCGTAGGAGCGTATGC
TACGCGGTGTGCAAGCTGGTTGCGACCAACCTTGATCGGTTGGAAAACCTTGGTGTCGCCAAGTG
GTTTGTTAGTAGCCATGCGTCGGAGGAACTGTTTCATTGATGAGTGCCCCCGCAGACTACTTTAT
ATATTTGTCTCGGTTACTAAGCATTTCTTAGCCGTCGGCAGCGTGCATAACGGAGAGCAGTTGCT
AGCGCGGGCACGTCGGGTTTGTCCCGATGGGGATGCAGGGTGCATACCGAGTGGAAGGTAGATGC
GCAGGGTGAATTTACAATAGCATCCCTTGTGGTAGCGGAGGAATGTTCTGGACCGGTCGCAAAGC
ACCTAATTGGGTTCGCTTAGGACCCCTTCGGCATAATGCGATGCAAAGTGACCGTTGGAAACGAG
TTTACGTGGGGAGATGTGAATCAATGAGTCAGTCGTAGACCCTGG
Right flanking sequence: Indices 165983 -- 166482
TTAGACTCCCACTTAAACCTCCACCTAGATCACCACTCCCACCCCACCTCACCAGAACTAATACT
TCAACATTAATACAAAACAATTACATATTTTACACCGCGTGGCCACTGTAGTTGCCTGAGATCAA
GTTACGCACCACAGGCACCTCGTTCCCGCCAGCAAGCACGGTAACGTTCTTCCCCGGAGGCTCGT
GGATCTGGAACTTGATCTGGACCCCCAGCTCGTGCTCGGAAGCCACGCCAGAGGTCATGAACCGC
GCCATGAGCTTCTCCTCGGCAGCACCCGAGCCGCCAAGCGCCAACGGGCTGGTGTAGCGCCACGT
CAACCGGTTTTTGTCCTTGTTGAACGACCCGTGCGGCGACAGCTTGGCCCCCAGCACCTCGACGT
CGTTGTTCAACGCCACGGTGATCACGAGGTTCTCCACCACGATCTTCTCCGTCACCAGCGGGTCG
GGCCGCACCACGATGATGAGCAGGGCCTGGTGGGCCTCGTACTTC
Found at i:165974 original size:42 final size:42
Alignment explanation
Indices: 165927--166011 Score: 127
Period size: 42 Copynumber: 2.0 Consensus size: 42
165917 TTAGACCTCC
* *
165927 ACCTCCACCTCCACTTAGAC-CTCCACCTAGACCTCCACTTAG
1 ACCTCCACCTCCACTTAGACTC-CCACCTAAACCTCCACCTAG
*
165969 ACCTCCACCTCCACTTAGACTCCCACTTAAACCTCCACCTAG
1 ACCTCCACCTCCACTTAGACTCCCACCTAAACCTCCACCTAG
166011 A
1 A
166012 TCACCACTCC
Statistics
Matches: 39, Mismatches: 3, Indels: 2
0.89 0.07 0.05
Matches are distributed among these distances:
42 38 0.97
43 1 0.03
ACGTcount: A:0.26, C:0.47, G:0.06, T:0.21
Consensus pattern (42 bp):
ACCTCCACCTCCACTTAGACTCCCACCTAAACCTCCACCTAG
Left flanking sequence: Indices 165427 -- 165926
GGCACATGGTCCTGGGAGTTGCGGACCCGGGTCGTAGGAGCGTATGCTACGCGGTGTGCAAGCTG
GTTGCGACCAACCTTGATCGGTTGGAAAACCTTGGTGTCGCCAAGTGGTTTGTTAGTAGCCATGC
GTCGGAGGAACTGTTTCATTGATGAGTGCCCCCGCAGACTACTTTATATATTTGTCTCGGTTACT
AAGCATTTCTTAGCCGTCGGCAGCGTGCATAACGGAGAGCAGTTGCTAGCGCGGGCACGTCGGGT
TTGTCCCGATGGGGATGCAGGGTGCATACCGAGTGGAAGGTAGATGCGCAGGGTGAATTTACAAT
AGCATCCCTTGTGGTAGCGGAGGAATGTTCTGGACCGGTCGCAAAGCACCTAATTGGGTTCGCTT
AGGACCCCTTCGGCATAATGCGATGCAAAGTGACCGTTGGAAACGAGTTTACGTGGGGAGATGTG
AATCAATGAGTCAGTCGTAGACCCTGGACCTCCACTTAGACCTCC
Right flanking sequence: Indices 166012 -- 166511
TCACCACTCCCACCCCACCTCACCAGAACTAATACTTCAACATTAATACAAAACAATTACATATT
TTACACCGCGTGGCCACTGTAGTTGCCTGAGATCAAGTTACGCACCACAGGCACCTCGTTCCCGC
CAGCAAGCACGGTAACGTTCTTCCCCGGAGGCTCGTGGATCTGGAACTTGATCTGGACCCCCAGC
TCGTGCTCGGAAGCCACGCCAGAGGTCATGAACCGCGCCATGAGCTTCTCCTCGGCAGCACCCGA
GCCGCCAAGCGCCAACGGGCTGGTGTAGCGCCACGTCAACCGGTTTTTGTCCTTGTTGAACGACC
CGTGCGGCGACAGCTTGGCCCCCAGCACCTCGACGTCGTTGTTCAACGCCACGGTGATCACGAGG
TTCTCCACCACGATCTTCTCCGTCACCAGCGGGTCGGGCCGCACCACGATGATGAGCAGGGCCTG
GTGGGCCTCGTACTTCCAGATCTGCGAGATCGTGAGCGGCACCAG
Found at i:165979 original size:30 final size:30
Alignment explanation
Indices: 165945--166008 Score: 94
Period size: 30 Copynumber: 2.1 Consensus size: 30
165935 CTCCACTTAG
*
165945 ACCTCCACCTAGAC-CTCCACTTAGACCTCC
1 ACCTCCACCTAGACTC-CCACTTAAACCTCC
*
165975 ACCTCCACTTAGACTCCCACTTAAACCTCC
1 ACCTCCACCTAGACTCCCACTTAAACCTCC
166005 ACCT
1 ACCT
166009 AGATCACCAC
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
30 30 0.97
31 1 0.03
ACGTcount: A:0.25, C:0.48, G:0.05, T:0.22
Consensus pattern (30 bp):
ACCTCCACCTAGACTCCCACTTAAACCTCC
Left flanking sequence: Indices 165445 -- 165944
TTGCGGACCCGGGTCGTAGGAGCGTATGCTACGCGGTGTGCAAGCTGGTTGCGACCAACCTTGAT
CGGTTGGAAAACCTTGGTGTCGCCAAGTGGTTTGTTAGTAGCCATGCGTCGGAGGAACTGTTTCA
TTGATGAGTGCCCCCGCAGACTACTTTATATATTTGTCTCGGTTACTAAGCATTTCTTAGCCGTC
GGCAGCGTGCATAACGGAGAGCAGTTGCTAGCGCGGGCACGTCGGGTTTGTCCCGATGGGGATGC
AGGGTGCATACCGAGTGGAAGGTAGATGCGCAGGGTGAATTTACAATAGCATCCCTTGTGGTAGC
GGAGGAATGTTCTGGACCGGTCGCAAAGCACCTAATTGGGTTCGCTTAGGACCCCTTCGGCATAA
TGCGATGCAAAGTGACCGTTGGAAACGAGTTTACGTGGGGAGATGTGAATCAATGAGTCAGTCGT
AGACCCTGGACCTCCACTTAGACCTCCACCTCCACCTCCACTTAG
Right flanking sequence: Indices 166009 -- 166508
AGATCACCACTCCCACCCCACCTCACCAGAACTAATACTTCAACATTAATACAAAACAATTACAT
ATTTTACACCGCGTGGCCACTGTAGTTGCCTGAGATCAAGTTACGCACCACAGGCACCTCGTTCC
CGCCAGCAAGCACGGTAACGTTCTTCCCCGGAGGCTCGTGGATCTGGAACTTGATCTGGACCCCC
AGCTCGTGCTCGGAAGCCACGCCAGAGGTCATGAACCGCGCCATGAGCTTCTCCTCGGCAGCACC
CGAGCCGCCAAGCGCCAACGGGCTGGTGTAGCGCCACGTCAACCGGTTTTTGTCCTTGTTGAACG
ACCCGTGCGGCGACAGCTTGGCCCCCAGCACCTCGACGTCGTTGTTCAACGCCACGGTGATCACG
AGGTTCTCCACCACGATCTTCTCCGTCACCAGCGGGTCGGGCCGCACCACGATGATGAGCAGGGC
CTGGTGGGCCTCGTACTTCCAGATCTGCGAGATCGTGAGCGGCAC
Found at i:165994 original size:18 final size:18
Alignment explanation
Indices: 165927--165988 Score: 70
Period size: 18 Copynumber: 3.1 Consensus size: 18
165917 TTAGACCTCC
165927 ACCTCCACCTCCACTTAG
1 ACCTCCACCTCCACTTAG
165945 ACCTCCACCTAGACCTCCACTTAG
1 ACCT---CC---ACCTCCACTTAG
165969 ACCTCCACCTCCACTTAG
1 ACCTCCACCTCCACTTAG
165987 AC
1 AC
165989 TCCCACTTAA
Statistics
Matches: 38, Mismatches: 0, Indels: 12
0.76 0.00 0.24
Matches are distributed among these distances:
18 18 0.47
21 4 0.11
24 16 0.42
ACGTcount: A:0.24, C:0.48, G:0.06, T:0.21
Consensus pattern (18 bp):
ACCTCCACCTCCACTTAG
Left flanking sequence: Indices 165427 -- 165926
GGCACATGGTCCTGGGAGTTGCGGACCCGGGTCGTAGGAGCGTATGCTACGCGGTGTGCAAGCTG
GTTGCGACCAACCTTGATCGGTTGGAAAACCTTGGTGTCGCCAAGTGGTTTGTTAGTAGCCATGC
GTCGGAGGAACTGTTTCATTGATGAGTGCCCCCGCAGACTACTTTATATATTTGTCTCGGTTACT
AAGCATTTCTTAGCCGTCGGCAGCGTGCATAACGGAGAGCAGTTGCTAGCGCGGGCACGTCGGGT
TTGTCCCGATGGGGATGCAGGGTGCATACCGAGTGGAAGGTAGATGCGCAGGGTGAATTTACAAT
AGCATCCCTTGTGGTAGCGGAGGAATGTTCTGGACCGGTCGCAAAGCACCTAATTGGGTTCGCTT
AGGACCCCTTCGGCATAATGCGATGCAAAGTGACCGTTGGAAACGAGTTTACGTGGGGAGATGTG
AATCAATGAGTCAGTCGTAGACCCTGGACCTCCACTTAGACCTCC
Right flanking sequence: Indices 165989 -- 166488
TCCCACTTAAACCTCCACCTAGATCACCACTCCCACCCCACCTCACCAGAACTAATACTTCAACA
TTAATACAAAACAATTACATATTTTACACCGCGTGGCCACTGTAGTTGCCTGAGATCAAGTTACG
CACCACAGGCACCTCGTTCCCGCCAGCAAGCACGGTAACGTTCTTCCCCGGAGGCTCGTGGATCT
GGAACTTGATCTGGACCCCCAGCTCGTGCTCGGAAGCCACGCCAGAGGTCATGAACCGCGCCATG
AGCTTCTCCTCGGCAGCACCCGAGCCGCCAAGCGCCAACGGGCTGGTGTAGCGCCACGTCAACCG
GTTTTTGTCCTTGTTGAACGACCCGTGCGGCGACAGCTTGGCCCCCAGCACCTCGACGTCGTTGT
TCAACGCCACGGTGATCACGAGGTTCTCCACCACGATCTTCTCCGTCACCAGCGGGTCGGGCCGC
ACCACGATGATGAGCAGGGCCTGGTGGGCCTCGTACTTCCAGATC
Found at i:166006 original size:12 final size:12
Alignment explanation
Indices: 165908--165976 Score: 102
Period size: 12 Copynumber: 5.8 Consensus size: 12
165898 GTAGACCCTG
165908 GACCTCCACTTA
1 GACCTCCACTTA
* *
165920 GACCTCCACCTC
1 GACCTCCACTTA
*
165932 CACCTCCACTTA
1 GACCTCCACTTA
*
165944 GACCTCCACCTA
1 GACCTCCACTTA
165956 GACCTCCACTTA
1 GACCTCCACTTA
165968 GACCTCCAC
1 GACCTCCAC
165977 CTCCACTTAG
Statistics
Matches: 49, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
12 49 1.00
ACGTcount: A:0.23, C:0.49, G:0.07, T:0.20
Consensus pattern (12 bp):
GACCTCCACTTA
Left flanking sequence: Indices 165408 -- 165907
CTGCAACATCAAGTCCGTGGGCACATGGTCCTGGGAGTTGCGGACCCGGGTCGTAGGAGCGTATG
CTACGCGGTGTGCAAGCTGGTTGCGACCAACCTTGATCGGTTGGAAAACCTTGGTGTCGCCAAGT
GGTTTGTTAGTAGCCATGCGTCGGAGGAACTGTTTCATTGATGAGTGCCCCCGCAGACTACTTTA
TATATTTGTCTCGGTTACTAAGCATTTCTTAGCCGTCGGCAGCGTGCATAACGGAGAGCAGTTGC
TAGCGCGGGCACGTCGGGTTTGTCCCGATGGGGATGCAGGGTGCATACCGAGTGGAAGGTAGATG
CGCAGGGTGAATTTACAATAGCATCCCTTGTGGTAGCGGAGGAATGTTCTGGACCGGTCGCAAAG
CACCTAATTGGGTTCGCTTAGGACCCCTTCGGCATAATGCGATGCAAAGTGACCGTTGGAAACGA
GTTTACGTGGGGAGATGTGAATCAATGAGTCAGTCGTAGACCCTG
Right flanking sequence: Indices 165977 -- 166476
CTCCACTTAGACTCCCACTTAAACCTCCACCTAGATCACCACTCCCACCCCACCTCACCAGAACT
AATACTTCAACATTAATACAAAACAATTACATATTTTACACCGCGTGGCCACTGTAGTTGCCTGA
GATCAAGTTACGCACCACAGGCACCTCGTTCCCGCCAGCAAGCACGGTAACGTTCTTCCCCGGAG
GCTCGTGGATCTGGAACTTGATCTGGACCCCCAGCTCGTGCTCGGAAGCCACGCCAGAGGTCATG
AACCGCGCCATGAGCTTCTCCTCGGCAGCACCCGAGCCGCCAAGCGCCAACGGGCTGGTGTAGCG
CCACGTCAACCGGTTTTTGTCCTTGTTGAACGACCCGTGCGGCGACAGCTTGGCCCCCAGCACCT
CGACGTCGTTGTTCAACGCCACGGTGATCACGAGGTTCTCCACCACGATCTTCTCCGTCACCAGC
GGGTCGGGCCGCACCACGATGATGAGCAGGGCCTGGTGGGCCTCG
Found at i:166011 original size:24 final size:24
Alignment explanation
Indices: 165909--166011 Score: 67
Period size: 24 Copynumber: 4.5 Consensus size: 24
165899 TAGACCCTGG
* * **
165909 ACCTCCACTTAGACCTCCACCTCC
1 ACCTCCACCTAGACCTCCACTTAA
* * *
165933 ACCTCCACTTAGACCTCCACCTAG
1 ACCTCCACCTAGACCTCCACTTAA
*
165957 ACCTCCACTTAGACCT-C-C----
1 ACCTCCACCTAGACCTCCACTTAA
*
165975 ACCTCCACTTAGA-CTCCCACTTAA
1 ACCTCCACCTAGACCT-CCACTTAA
165999 ACCTCCACCTAGA
1 ACCTCCACCTAGA
166012 TCACCACTCC
Statistics
Matches: 69, Mismatches: 3, Indels: 14
0.80 0.03 0.16
Matches are distributed among these distances:
17 2 0.03
18 13 0.19
19 1 0.01
20 1 0.01
22 1 0.01
23 1 0.01
24 50 0.72
ACGTcount: A:0.25, C:0.48, G:0.06, T:0.21
Consensus pattern (24 bp):
ACCTCCACCTAGACCTCCACTTAA
Left flanking sequence: Indices 165409 -- 165908
TGCAACATCAAGTCCGTGGGCACATGGTCCTGGGAGTTGCGGACCCGGGTCGTAGGAGCGTATGC
TACGCGGTGTGCAAGCTGGTTGCGACCAACCTTGATCGGTTGGAAAACCTTGGTGTCGCCAAGTG
GTTTGTTAGTAGCCATGCGTCGGAGGAACTGTTTCATTGATGAGTGCCCCCGCAGACTACTTTAT
ATATTTGTCTCGGTTACTAAGCATTTCTTAGCCGTCGGCAGCGTGCATAACGGAGAGCAGTTGCT
AGCGCGGGCACGTCGGGTTTGTCCCGATGGGGATGCAGGGTGCATACCGAGTGGAAGGTAGATGC
GCAGGGTGAATTTACAATAGCATCCCTTGTGGTAGCGGAGGAATGTTCTGGACCGGTCGCAAAGC
ACCTAATTGGGTTCGCTTAGGACCCCTTCGGCATAATGCGATGCAAAGTGACCGTTGGAAACGAG
TTTACGTGGGGAGATGTGAATCAATGAGTCAGTCGTAGACCCTGG
Right flanking sequence: Indices 166012 -- 166511
TCACCACTCCCACCCCACCTCACCAGAACTAATACTTCAACATTAATACAAAACAATTACATATT
TTACACCGCGTGGCCACTGTAGTTGCCTGAGATCAAGTTACGCACCACAGGCACCTCGTTCCCGC
CAGCAAGCACGGTAACGTTCTTCCCCGGAGGCTCGTGGATCTGGAACTTGATCTGGACCCCCAGC
TCGTGCTCGGAAGCCACGCCAGAGGTCATGAACCGCGCCATGAGCTTCTCCTCGGCAGCACCCGA
GCCGCCAAGCGCCAACGGGCTGGTGTAGCGCCACGTCAACCGGTTTTTGTCCTTGTTGAACGACC
CGTGCGGCGACAGCTTGGCCCCCAGCACCTCGACGTCGTTGTTCAACGCCACGGTGATCACGAGG
TTCTCCACCACGATCTTCTCCGTCACCAGCGGGTCGGGCCGCACCACGATGATGAGCAGGGCCTG
GTGGGCCTCGTACTTCCAGATCTGCGAGATCGTGAGCGGCACCAG
Found at i:167394 original size:18 final size:18
Alignment explanation
Indices: 167371--167417 Score: 94
Period size: 18 Copynumber: 2.6 Consensus size: 18
167361 AAACGACGGC
167371 ACTCTGTCCTGACCAGGA
1 ACTCTGTCCTGACCAGGA
167389 ACTCTGTCCTGACCAGGA
1 ACTCTGTCCTGACCAGGA
167407 ACTCTGTCCTG
1 ACTCTGTCCTG
167418 GCTGGGAACC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 29 1.00
ACGTcount: A:0.19, C:0.34, G:0.21, T:0.26
Consensus pattern (18 bp):
ACTCTGTCCTGACCAGGA
Left flanking sequence: Indices 166871 -- 167370
CCCCCGTGTCCTGGGCGGTCAACTGGGTGGGGATCACCAGGTTACGCGTGGCAGGGAGCCCGTGG
AACATCTCCAGCGCCACCCGAGGCTTGGACGCCATCGAGCGCGAGCTGTCGGGCCCCACAGGGTC
CAGCGACGGTGCCAGCAGCGCCAGCGGAGGCGCGGAGAACGGGTCGGAGCCCGGCGCCAGCGACG
CCTCGGTGGTCTCGGTCAGCGTCTTGGCGTCCTGGCCCATCACCCCGATGGTGGCCGCACCAAGC
GCAGCCGTGCCGGCTGCCGCAGCTCCGAGCACCCCGGTGGAGGGGCCCAGCGACGACTGGGCAAA
CGCCAGCGGGTCCTTGGCGTCGTGGAAGGGCGCCAGCGCGTCGCCGTCGTACCCGGGCGGGTCCA
GCGGGAGGTTCTTGTGGTCCAAGCCCGGGATCTCGGTGGAGCCCACCTCGGGGCCCACGTGGATC
TGCGGCGGCTGGCTGGCCCGCTCGGTCCCCTGGCCAAACGACGGC
Right flanking sequence: Indices 167418 -- 167917
GCTGGGAACCCGGTCCTGCGACACTCTGTCCTGGCTGAAACGCCGGTCCTGGCCCGGACGGTCGT
CTCTGCCGCTCAACGAGCCTCGCTGGCCCGCCTGGCCCTCGTGGTGGACCACCTTGCGCGACGGC
GGCGGCGGAGGAGCCGCCTTCAGCCCGCGCTTGGCCTGGGGCGACCCCAACTCGTGCTCGATGTT
GGGCTCCGGAAGGCCCTCGTCGCCGTGCTCAAACGAGAACTTCAGGTCGCGTGCCTCGGGGTACA
ACCCTGCGTTCGGGTTGCGGGAGGCGTGTTGAGGGGTGTTGATGTCGTGGCGTTTGAGCATCAGC
AACCGGTTCGGGTCCAGGTCCGACGACTCGTCCAGCAGCTCCAGCTCGTGGTACTCGACGAAGTT
GGGCGACGAGTCTGCGGCGGCGACGGCGGCGGCGGTGGTGGGGGTGAACGGGGTCAGGAACGAGT
CCTCGGGCACCGGGGTGGCGCGGTCGTGCTCGAAGGGGGCCTTGG
Found at i:168024 original size:21 final size:21
Alignment explanation
Indices: 168000--168039 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
167990 TCTGTTGGGA
*
168000 CTGAAGGGGTTGGTTCTGGCT
1 CTGAAGGGGCTGGTTCTGGCT
168021 CTGAAGGGGCTGGTTCTGG
1 CTGAAGGGGCTGGTTCTGG
168040 TTGAAGCCCT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.10, C:0.15, G:0.45, T:0.30
Consensus pattern (21 bp):
CTGAAGGGGCTGGTTCTGGCT
Left flanking sequence: Indices 167500 -- 167999
CCTCGCTGGCCCGCCTGGCCCTCGTGGTGGACCACCTTGCGCGACGGCGGCGGCGGAGGAGCCGC
CTTCAGCCCGCGCTTGGCCTGGGGCGACCCCAACTCGTGCTCGATGTTGGGCTCCGGAAGGCCCT
CGTCGCCGTGCTCAAACGAGAACTTCAGGTCGCGTGCCTCGGGGTACAACCCTGCGTTCGGGTTG
CGGGAGGCGTGTTGAGGGGTGTTGATGTCGTGGCGTTTGAGCATCAGCAACCGGTTCGGGTCCAG
GTCCGACGACTCGTCCAGCAGCTCCAGCTCGTGGTACTCGACGAAGTTGGGCGACGAGTCTGCGG
CGGCGACGGCGGCGGCGGTGGTGGGGGTGAACGGGGTCAGGAACGAGTCCTCGGGCACCGGGGTG
GCGCGGTCGTGCTCGAAGGGGGCCTTGGACAGCGCCAGCGGGATCGGTGGCGGGTTGGAGGGCTT
TTGCGAGAGCGAGCGCGGCTGGTTTTCCGAGAAGCTCTGTTGGGA
Right flanking sequence: Indices 168040 -- 168539
TTGAAGCCCTGGTTTTGGCCTTGTTGACCCTGGAAGCCCTGGTTCTGGCTTTGGAAACCCTGGTT
TTGGCCTTGGAAACCCTGGAAGCCCTGGTTTTGAGCTTGCTGGCCCTGGTTTTGGCCCTGTTGAC
CCTGGAAACCCTGGTTCTGGCCCTGCTGACCCTCAAAACCATCCCCGTGCTCCACGTCGTCCAAC
CCGTCCTTCTCGTGGCCCTCCACGGGCGTCCCAAAAGCACTGCTATCGCCAAACTCCCCACCCAC
CTGGGGCGTCGCAGGCAACAGGTTGTTGTTGCCAGGCACCAACGGAGCCTGCAGCGCCAGCATGG
GCGGAAGCGGCTTGCCTCGGCCCGGGATCAACTCCGGCTGGCTGAACGGGTCGTTTTCCTGCTTG
GCCAGCTCTCTCTCGGGGTGTCTGTCGTCGTCGTGGCCATGGTGGGCCGCGTAGCCAGCAGCTCC
AACAGCGCCAGCCCCCGCAGCCACCGCGCCCGCGGCAGCCCCATG
Found at i:168100 original size:21 final size:21
Alignment explanation
Indices: 168070--168123 Score: 81
Period size: 21 Copynumber: 2.6 Consensus size: 21
168060 TTGTTGACCC
* *
168070 TGGAAGCCCTGGTTCTGGCTT
1 TGGAAACCCTGGTTCTGGCCT
*
168091 TGGAAACCCTGGTTTTGGCCT
1 TGGAAACCCTGGTTCTGGCCT
168112 TGGAAACCCTGG
1 TGGAAACCCTGG
168124 AAGCCCTGGT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.15, C:0.24, G:0.31, T:0.30
Consensus pattern (21 bp):
TGGAAACCCTGGTTCTGGCCT
Left flanking sequence: Indices 167570 -- 168069
GCCCGCGCTTGGCCTGGGGCGACCCCAACTCGTGCTCGATGTTGGGCTCCGGAAGGCCCTCGTCG
CCGTGCTCAAACGAGAACTTCAGGTCGCGTGCCTCGGGGTACAACCCTGCGTTCGGGTTGCGGGA
GGCGTGTTGAGGGGTGTTGATGTCGTGGCGTTTGAGCATCAGCAACCGGTTCGGGTCCAGGTCCG
ACGACTCGTCCAGCAGCTCCAGCTCGTGGTACTCGACGAAGTTGGGCGACGAGTCTGCGGCGGCG
ACGGCGGCGGCGGTGGTGGGGGTGAACGGGGTCAGGAACGAGTCCTCGGGCACCGGGGTGGCGCG
GTCGTGCTCGAAGGGGGCCTTGGACAGCGCCAGCGGGATCGGTGGCGGGTTGGAGGGCTTTTGCG
AGAGCGAGCGCGGCTGGTTTTCCGAGAAGCTCTGTTGGGACTGAAGGGGTTGGTTCTGGCTCTGA
AGGGGCTGGTTCTGGTTGAAGCCCTGGTTTTGGCCTTGTTGACCC
Right flanking sequence: Indices 168124 -- 168623
AAGCCCTGGTTTTGAGCTTGCTGGCCCTGGTTTTGGCCCTGTTGACCCTGGAAACCCTGGTTCTG
GCCCTGCTGACCCTCAAAACCATCCCCGTGCTCCACGTCGTCCAACCCGTCCTTCTCGTGGCCCT
CCACGGGCGTCCCAAAAGCACTGCTATCGCCAAACTCCCCACCCACCTGGGGCGTCGCAGGCAAC
AGGTTGTTGTTGCCAGGCACCAACGGAGCCTGCAGCGCCAGCATGGGCGGAAGCGGCTTGCCTCG
GCCCGGGATCAACTCCGGCTGGCTGAACGGGTCGTTTTCCTGCTTGGCCAGCTCTCTCTCGGGGT
GTCTGTCGTCGTCGTGGCCATGGTGGGCCGCGTAGCCAGCAGCTCCAACAGCGCCAGCCCCCGCA
GCCACCGCGCCCGCGGCAGCCCCATGGCCTCGGCCCTTGCGCAGGGTCAGACGAGAAGGACCGCC
GGTCAGCGCCGTCACCAACAGCGCGTCCTCAGGGATCGCCCCCAC
Found at i:168100 original size:30 final size:30
Alignment explanation
Indices: 168042--168134 Score: 78
Period size: 30 Copynumber: 3.4 Consensus size: 30
168032 GGTTCTGGTT
* ***
168042 GAAGCCCTGGTTTTGGCCTTGTTGACCCTG
1 GAAGCCCTGGTTCTGGCCTTGGAAACCCTG
*
168072 GAAGCCCTGGTTCTGGCTTTGGAAACCCT-
1 GAAGCCCTGGTTCTGGCCTTGGAAACCCTG
168101 G--G---T--TT-TGGCCTTGGAAACCCTG
1 GAAGCCCTGGTTCTGGCCTTGGAAACCCTG
168123 GAAGCCCTGGTT
1 GAAGCCCTGGTT
168135 TTGAGCTTGC
Statistics
Matches: 49, Mismatches: 6, Indels: 17
0.68 0.08 0.24
Matches are distributed among these distances:
21 15 0.31
22 3 0.06
24 2 0.04
27 2 0.04
29 3 0.06
30 24 0.49
ACGTcount: A:0.14, C:0.26, G:0.30, T:0.30
Consensus pattern (30 bp):
GAAGCCCTGGTTCTGGCCTTGGAAACCCTG
Left flanking sequence: Indices 167542 -- 168041
GACGGCGGCGGCGGAGGAGCCGCCTTCAGCCCGCGCTTGGCCTGGGGCGACCCCAACTCGTGCTC
GATGTTGGGCTCCGGAAGGCCCTCGTCGCCGTGCTCAAACGAGAACTTCAGGTCGCGTGCCTCGG
GGTACAACCCTGCGTTCGGGTTGCGGGAGGCGTGTTGAGGGGTGTTGATGTCGTGGCGTTTGAGC
ATCAGCAACCGGTTCGGGTCCAGGTCCGACGACTCGTCCAGCAGCTCCAGCTCGTGGTACTCGAC
GAAGTTGGGCGACGAGTCTGCGGCGGCGACGGCGGCGGCGGTGGTGGGGGTGAACGGGGTCAGGA
ACGAGTCCTCGGGCACCGGGGTGGCGCGGTCGTGCTCGAAGGGGGCCTTGGACAGCGCCAGCGGG
ATCGGTGGCGGGTTGGAGGGCTTTTGCGAGAGCGAGCGCGGCTGGTTTTCCGAGAAGCTCTGTTG
GGACTGAAGGGGTTGGTTCTGGCTCTGAAGGGGCTGGTTCTGGTT
Right flanking sequence: Indices 168135 -- 168634
TTGAGCTTGCTGGCCCTGGTTTTGGCCCTGTTGACCCTGGAAACCCTGGTTCTGGCCCTGCTGAC
CCTCAAAACCATCCCCGTGCTCCACGTCGTCCAACCCGTCCTTCTCGTGGCCCTCCACGGGCGTC
CCAAAAGCACTGCTATCGCCAAACTCCCCACCCACCTGGGGCGTCGCAGGCAACAGGTTGTTGTT
GCCAGGCACCAACGGAGCCTGCAGCGCCAGCATGGGCGGAAGCGGCTTGCCTCGGCCCGGGATCA
ACTCCGGCTGGCTGAACGGGTCGTTTTCCTGCTTGGCCAGCTCTCTCTCGGGGTGTCTGTCGTCG
TCGTGGCCATGGTGGGCCGCGTAGCCAGCAGCTCCAACAGCGCCAGCCCCCGCAGCCACCGCGCC
CGCGGCAGCCCCATGGCCTCGGCCCTTGCGCAGGGTCAGACGAGAAGGACCGCCGGTCAGCGCCG
TCACCAACAGCGCGTCCTCAGGGATCGCCCCCACGTCGCCGGTGT
Found at i:168197 original size:51 final size:51
Alignment explanation
Indices: 168046--168202 Score: 190
Period size: 51 Copynumber: 3.1 Consensus size: 51
168036 CTGGTTGAAG
* ***
168046 CCCTGGTTTTGGCCTTGTTGACCCTGGAAGCCCTGGTTCTGGCTTTGGAAA
1 CCCTGGTTTTGGCCTTGTTGACCCTGGAAGCCCTGGTTCTGGCCTTGCTGA
*** * *
168097 CCCTGGTTTTGGCCTTGGAAACCCTGGAAGCCCTGGTTTTGAG-CTTGCTGG
1 CCCTGGTTTTGGCCTTGTTGACCCTGGAAGCCCTGGTTCTG-GCCTTGCTGA
* * *
168148 CCCTGGTTTTGGCCCTGTTGACCCTGGAAACCCTGGTTCTGGCCCTGCTGA
1 CCCTGGTTTTGGCCTTGTTGACCCTGGAAGCCCTGGTTCTGGCCTTGCTGA
168199 CCCT
1 CCCT
168203 CAAAACCATC
Statistics
Matches: 87, Mismatches: 17, Indels: 4
0.81 0.16 0.04
Matches are distributed among these distances:
50 1 0.01
51 85 0.98
52 1 0.01
ACGTcount: A:0.11, C:0.29, G:0.29, T:0.31
Consensus pattern (51 bp):
CCCTGGTTTTGGCCTTGTTGACCCTGGAAGCCCTGGTTCTGGCCTTGCTGA
Left flanking sequence: Indices 167546 -- 168045
GCGGCGGCGGAGGAGCCGCCTTCAGCCCGCGCTTGGCCTGGGGCGACCCCAACTCGTGCTCGATG
TTGGGCTCCGGAAGGCCCTCGTCGCCGTGCTCAAACGAGAACTTCAGGTCGCGTGCCTCGGGGTA
CAACCCTGCGTTCGGGTTGCGGGAGGCGTGTTGAGGGGTGTTGATGTCGTGGCGTTTGAGCATCA
GCAACCGGTTCGGGTCCAGGTCCGACGACTCGTCCAGCAGCTCCAGCTCGTGGTACTCGACGAAG
TTGGGCGACGAGTCTGCGGCGGCGACGGCGGCGGCGGTGGTGGGGGTGAACGGGGTCAGGAACGA
GTCCTCGGGCACCGGGGTGGCGCGGTCGTGCTCGAAGGGGGCCTTGGACAGCGCCAGCGGGATCG
GTGGCGGGTTGGAGGGCTTTTGCGAGAGCGAGCGCGGCTGGTTTTCCGAGAAGCTCTGTTGGGAC
TGAAGGGGTTGGTTCTGGCTCTGAAGGGGCTGGTTCTGGTTGAAG
Right flanking sequence: Indices 168203 -- 168702
CAAAACCATCCCCGTGCTCCACGTCGTCCAACCCGTCCTTCTCGTGGCCCTCCACGGGCGTCCCA
AAAGCACTGCTATCGCCAAACTCCCCACCCACCTGGGGCGTCGCAGGCAACAGGTTGTTGTTGCC
AGGCACCAACGGAGCCTGCAGCGCCAGCATGGGCGGAAGCGGCTTGCCTCGGCCCGGGATCAACT
CCGGCTGGCTGAACGGGTCGTTTTCCTGCTTGGCCAGCTCTCTCTCGGGGTGTCTGTCGTCGTCG
TGGCCATGGTGGGCCGCGTAGCCAGCAGCTCCAACAGCGCCAGCCCCCGCAGCCACCGCGCCCGC
GGCAGCCCCATGGCCTCGGCCCTTGCGCAGGGTCAGACGAGAAGGACCGCCGGTCAGCGCCGTCA
CCAACAGCGCGTCCTCAGGGATCGCCCCCACGTCGCCGGTGTGCTTCTTGTCCTTCTTCTTGCGG
CCAAAGATCAGCCCCACCTTCAGCTTCAACAGCTTCTTGTCCTTC
Found at i:168209 original size:30 final size:30
Alignment explanation
Indices: 168148--168209 Score: 88
Period size: 30 Copynumber: 2.1 Consensus size: 30
168138 AGCTTGCTGG
* * **
168148 CCCTGGTTTTGGCCCTGTTGACCCTGGAAA
1 CCCTGGTTCTGGCCCTGCTGACCCTCAAAA
168178 CCCTGGTTCTGGCCCTGCTGACCCTCAAAA
1 CCCTGGTTCTGGCCCTGCTGACCCTCAAAA
168208 CC
1 CC
168210 ATCCCCGTGC
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.15, C:0.37, G:0.23, T:0.26
Consensus pattern (30 bp):
CCCTGGTTCTGGCCCTGCTGACCCTCAAAA
Left flanking sequence: Indices 167648 -- 168147
AGAACTTCAGGTCGCGTGCCTCGGGGTACAACCCTGCGTTCGGGTTGCGGGAGGCGTGTTGAGGG
GTGTTGATGTCGTGGCGTTTGAGCATCAGCAACCGGTTCGGGTCCAGGTCCGACGACTCGTCCAG
CAGCTCCAGCTCGTGGTACTCGACGAAGTTGGGCGACGAGTCTGCGGCGGCGACGGCGGCGGCGG
TGGTGGGGGTGAACGGGGTCAGGAACGAGTCCTCGGGCACCGGGGTGGCGCGGTCGTGCTCGAAG
GGGGCCTTGGACAGCGCCAGCGGGATCGGTGGCGGGTTGGAGGGCTTTTGCGAGAGCGAGCGCGG
CTGGTTTTCCGAGAAGCTCTGTTGGGACTGAAGGGGTTGGTTCTGGCTCTGAAGGGGCTGGTTCT
GGTTGAAGCCCTGGTTTTGGCCTTGTTGACCCTGGAAGCCCTGGTTCTGGCTTTGGAAACCCTGG
TTTTGGCCTTGGAAACCCTGGAAGCCCTGGTTTTGAGCTTGCTGG
Right flanking sequence: Indices 168210 -- 168709
ATCCCCGTGCTCCACGTCGTCCAACCCGTCCTTCTCGTGGCCCTCCACGGGCGTCCCAAAAGCAC
TGCTATCGCCAAACTCCCCACCCACCTGGGGCGTCGCAGGCAACAGGTTGTTGTTGCCAGGCACC
AACGGAGCCTGCAGCGCCAGCATGGGCGGAAGCGGCTTGCCTCGGCCCGGGATCAACTCCGGCTG
GCTGAACGGGTCGTTTTCCTGCTTGGCCAGCTCTCTCTCGGGGTGTCTGTCGTCGTCGTGGCCAT
GGTGGGCCGCGTAGCCAGCAGCTCCAACAGCGCCAGCCCCCGCAGCCACCGCGCCCGCGGCAGCC
CCATGGCCTCGGCCCTTGCGCAGGGTCAGACGAGAAGGACCGCCGGTCAGCGCCGTCACCAACAG
CGCGTCCTCAGGGATCGCCCCCACGTCGCCGGTGTGCTTCTTGTCCTTCTTCTTGCGGCCAAAGA
TCAGCCCCACCTTCAGCTTCAACAGCTTCTTGTCCTTCTCCTTGC
Found at i:173382 original size:19 final size:19
Alignment explanation
Indices: 173358--173402 Score: 72
Period size: 19 Copynumber: 2.4 Consensus size: 19
173348 CGTCGTGCTT
173358 GTTGCTCTCAAGCTCTGCC
1 GTTGCTCTCAAGCTCTGCC
* *
173377 GTTGCTCTTAAGCTCTGCT
1 GTTGCTCTCAAGCTCTGCC
173396 GTTGCTC
1 GTTGCTC
173403 CGCCGTTGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.09, C:0.31, G:0.22, T:0.38
Consensus pattern (19 bp):
GTTGCTCTCAAGCTCTGCC
Left flanking sequence: Indices 172858 -- 173357
CGACCCGCAAATCCGCTTGGCTGCTTGGTGAAGTTTTGACGAAAATGCCGCCACCAGGCTAAGCG
ACTGTAGCGACGACACGACCACTGCCGTCACACGCAGAGAACCGTCGGTGCGTTAATGTGTCCTG
CTTGGTAGTAGGGTTGCGGGTCTCTTTGCGTCATTGTCACGGCAACGATCAACAATACTTGATCT
GGCAGCGACATGCAAAGGCAGTTTAGGCGAGGGACAGTGTCTTGCGACTAAGTATAGTTAAAGTT
AGAGCAGCGGCAAGGAGCCACAGTACGGCACACGAAGCTTAACTGAGTCGGATGGACTTTAGAGG
GGTTGCAACCAGACAGAAATCAGAGCTATAAACAACGGTGGGAGATATCTTTATGGCAACTATTT
GGAAACAGGTTGTATGAACGGCGGAAGATAACCTTATAGCAACTACTAGGAGACTTGTTGCGGCC
TAACTTTCAAAGTAGCTAGAGCTGTTTGCTCCCACCGTCGTGCTT
Right flanking sequence: Indices 173403 -- 173902
CGCCGTTGCCACCTATGACCCTCCGCTCCTGTTGCTGTTGCTTTAACCTTACATTACCTACACTC
TAAGCTTAACTCTAGTCGTGCTGAAGGTGCACTCGAGTATGAGTGGTTGCCCCATGACGTAACCA
CGGCCTTTGTGTCAAACCTAGTTTACCGTCGGTTTAGTGGCCGCGGGACAAGGCCACCAGGGCTA
AAGCCACCGCTGATCATGTAGCCCCACGCGAGTGATACATCATGCCGGTCTAGCGACATGCAGAG
GGTGTCGAGATCCATTCGCCGTACCCTCTCGCCTCGACCATCCGCATTGGGTGGTACCTACGCAT
AGGTGGCTTAGACACCATAGGACCTTAACCAACAATACGATGCGGTATGGGGCACAGTGCACCTG
GGCTCGAGGAGTCCGGTTCTTTGCTCTGCTTGTGGCATTCCACCCGACCGCATTCCGCATTGTGA
CTGTGTTCAGTGCGGCCACCACAAAGCAGCTCGTCAATGGGGATG
Found at i:174135 original size:8 final size:8
Alignment explanation
Indices: 174118--174173 Score: 58
Period size: 8 Copynumber: 7.0 Consensus size: 8
174108 CACATTACAT
174118 TCCACCAC
1 TCCACCAC
*
174126 TCCACGAC
1 TCCACCAC
* *
174134 TCTACTAC
1 TCCACCAC
174142 TCCACCAC
1 TCCACCAC
* *
174150 TCTACTAC
1 TCCACCAC
174158 TCCACCAC
1 TCCACCAC
*
174166 TCTACCAC
1 TCCACCAC
174174 CCTACTCTGC
Statistics
Matches: 38, Mismatches: 10, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
8 38 1.00
ACGTcount: A:0.25, C:0.52, G:0.02, T:0.21
Consensus pattern (8 bp):
TCCACCAC
Left flanking sequence: Indices 173618 -- 174117
GCCCCACGCGAGTGATACATCATGCCGGTCTAGCGACATGCAGAGGGTGTCGAGATCCATTCGCC
GTACCCTCTCGCCTCGACCATCCGCATTGGGTGGTACCTACGCATAGGTGGCTTAGACACCATAG
GACCTTAACCAACAATACGATGCGGTATGGGGCACAGTGCACCTGGGCTCGAGGAGTCCGGTTCT
TTGCTCTGCTTGTGGCATTCCACCCGACCGCATTCCGCATTGTGACTGTGTTCAGTGCGGCCACC
ACAAAGCAGCTCGTCAATGGGGATGTAACCTTGGCACTGAAACGGCGCAAAAGTTGTTGCTAGCG
AGGCGTAGCGAGCCAGGTGGCGTGGTGGCACGAGAGGGAGAGGCTGTGTGCCATTTACACTGTCA
GTCTGTTTCAGTATGAGCACGGAATGACACAACTGCTGCTTTGCGTCTCCAGCCAAGACTGACTG
CCGAGACTGACACTTGCCTGGTCTAATACTGCGCCCACATTACAT
Right flanking sequence: Indices 174174 -- 174673
CCTACTCTGCCACCCAACCCACCGCGACATTATCACATTTCCGCTCTCCATTCTCCAGCATTCTC
TCAACTCCACCAACTCCACCACGCTCCTCCACTGCGTGCCCCACCCGCAAGCACCTCCTACACCA
CCCTATTGTTTGTCCCCCACATTCCCGGTATTATTGCCTTCCCAATCGGGCAAACAATGGTCGTT
CCACGACGGTGTTTCAATCAGTCGTCCCCGTGGCCCGCGACCGTCCCCCACTTCTCCACCCCTCT
TGGCCTCGCTCCCGTCTTCGTTCGCGTCGTGTCGTTTGTTCACATTGTAGTTGCTATGCATGCTG
TACGCCAAACCTTAACTCTCGCCTAGTTGCCCTTACCGATTTTGTCCTCTGTCGCCTGCACACCC
ACCGCCCTCGTAATAGACACCCTTACATGGTACTTGTACATGAACGTCTGCATAAAAACCGTTGG
TTGCGGTTGTGGTACAGCATGTGGTACCTACGCGGAGGAAGTGGA
Found at i:174145 original size:16 final size:16
Alignment explanation
Indices: 174124--174170 Score: 85
Period size: 16 Copynumber: 2.9 Consensus size: 16
174114 ACATTCCACC
*
174124 ACTCCACGACTCTACT
1 ACTCCACCACTCTACT
174140 ACTCCACCACTCTACT
1 ACTCCACCACTCTACT
174156 ACTCCACCACTCTAC
1 ACTCCACCACTCTAC
174171 CACCCTACTC
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
16 30 1.00
ACGTcount: A:0.26, C:0.49, G:0.02, T:0.23
Consensus pattern (16 bp):
ACTCCACCACTCTACT
Left flanking sequence: Indices 173624 -- 174123
CGCGAGTGATACATCATGCCGGTCTAGCGACATGCAGAGGGTGTCGAGATCCATTCGCCGTACCC
TCTCGCCTCGACCATCCGCATTGGGTGGTACCTACGCATAGGTGGCTTAGACACCATAGGACCTT
AACCAACAATACGATGCGGTATGGGGCACAGTGCACCTGGGCTCGAGGAGTCCGGTTCTTTGCTC
TGCTTGTGGCATTCCACCCGACCGCATTCCGCATTGTGACTGTGTTCAGTGCGGCCACCACAAAG
CAGCTCGTCAATGGGGATGTAACCTTGGCACTGAAACGGCGCAAAAGTTGTTGCTAGCGAGGCGT
AGCGAGCCAGGTGGCGTGGTGGCACGAGAGGGAGAGGCTGTGTGCCATTTACACTGTCAGTCTGT
TTCAGTATGAGCACGGAATGACACAACTGCTGCTTTGCGTCTCCAGCCAAGACTGACTGCCGAGA
CTGACACTTGCCTGGTCTAATACTGCGCCCACATTACATTCCACC
Right flanking sequence: Indices 174171 -- 174670
CACCCTACTCTGCCACCCAACCCACCGCGACATTATCACATTTCCGCTCTCCATTCTCCAGCATT
CTCTCAACTCCACCAACTCCACCACGCTCCTCCACTGCGTGCCCCACCCGCAAGCACCTCCTACA
CCACCCTATTGTTTGTCCCCCACATTCCCGGTATTATTGCCTTCCCAATCGGGCAAACAATGGTC
GTTCCACGACGGTGTTTCAATCAGTCGTCCCCGTGGCCCGCGACCGTCCCCCACTTCTCCACCCC
TCTTGGCCTCGCTCCCGTCTTCGTTCGCGTCGTGTCGTTTGTTCACATTGTAGTTGCTATGCATG
CTGTACGCCAAACCTTAACTCTCGCCTAGTTGCCCTTACCGATTTTGTCCTCTGTCGCCTGCACA
CCCACCGCCCTCGTAATAGACACCCTTACATGGTACTTGTACATGAACGTCTGCATAAAAACCGT
TGGTTGCGGTTGTGGTACAGCATGTGGTACCTACGCGGAGGAAGT
Found at i:174159 original size:24 final size:24
Alignment explanation
Indices: 174118--174187 Score: 70
Period size: 24 Copynumber: 2.9 Consensus size: 24
174108 CACATTACAT
* * * *
174118 TCCACCACTCCACGACTCTACTAC
1 TCCACCACTCTACTACTCCACCAC
174142 TCCACCACTCTACTACTCCACCAC
1 TCCACCACTCTACTACTCCACCAC
* *
174166 TCTACCACCCTACT-CTGCCACC
1 TCCACCACTCTACTACT-CCACC
174188 CAACCCACCG
Statistics
Matches: 39, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
23 2 0.05
24 37 0.95
ACGTcount: A:0.23, C:0.53, G:0.03, T:0.21
Consensus pattern (24 bp):
TCCACCACTCTACTACTCCACCAC
Left flanking sequence: Indices 173618 -- 174117
GCCCCACGCGAGTGATACATCATGCCGGTCTAGCGACATGCAGAGGGTGTCGAGATCCATTCGCC
GTACCCTCTCGCCTCGACCATCCGCATTGGGTGGTACCTACGCATAGGTGGCTTAGACACCATAG
GACCTTAACCAACAATACGATGCGGTATGGGGCACAGTGCACCTGGGCTCGAGGAGTCCGGTTCT
TTGCTCTGCTTGTGGCATTCCACCCGACCGCATTCCGCATTGTGACTGTGTTCAGTGCGGCCACC
ACAAAGCAGCTCGTCAATGGGGATGTAACCTTGGCACTGAAACGGCGCAAAAGTTGTTGCTAGCG
AGGCGTAGCGAGCCAGGTGGCGTGGTGGCACGAGAGGGAGAGGCTGTGTGCCATTTACACTGTCA
GTCTGTTTCAGTATGAGCACGGAATGACACAACTGCTGCTTTGCGTCTCCAGCCAAGACTGACTG
CCGAGACTGACACTTGCCTGGTCTAATACTGCGCCCACATTACAT
Right flanking sequence: Indices 174188 -- 174687
CAACCCACCGCGACATTATCACATTTCCGCTCTCCATTCTCCAGCATTCTCTCAACTCCACCAAC
TCCACCACGCTCCTCCACTGCGTGCCCCACCCGCAAGCACCTCCTACACCACCCTATTGTTTGTC
CCCCACATTCCCGGTATTATTGCCTTCCCAATCGGGCAAACAATGGTCGTTCCACGACGGTGTTT
CAATCAGTCGTCCCCGTGGCCCGCGACCGTCCCCCACTTCTCCACCCCTCTTGGCCTCGCTCCCG
TCTTCGTTCGCGTCGTGTCGTTTGTTCACATTGTAGTTGCTATGCATGCTGTACGCCAAACCTTA
ACTCTCGCCTAGTTGCCCTTACCGATTTTGTCCTCTGTCGCCTGCACACCCACCGCCCTCGTAAT
AGACACCCTTACATGGTACTTGTACATGAACGTCTGCATAAAAACCGTTGGTTGCGGTTGTGGTA
CAGCATGTGGTACCTACGCGGAGGAAGTGGATTTGCAGCCATCGC
Found at i:175266 original size:12 final size:13
Alignment explanation
Indices: 175238--175279 Score: 50
Period size: 13 Copynumber: 3.3 Consensus size: 13
175228 CAGCTCTCCG
175238 TCCACCAACTCTA
1 TCCACCAACTCTA
*
175251 TCCACC-ACTCTT
1 TCCACCAACTCTA
**
175263 TCCACCCGCTCTA
1 TCCACCAACTCTA
175276 TCCA
1 TCCA
175280 TTAACTTCCC
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
12 11 0.44
13 14 0.56
ACGTcount: A:0.21, C:0.50, G:0.02, T:0.26
Consensus pattern (13 bp):
TCCACCAACTCTA
Left flanking sequence: Indices 174738 -- 175237
CCTGGGGCCCTGGAGACACTGTGGGCGACCACCGCGGGCACGCCCGACGCTCCACACAAAAGGCG
GCGGCGTGGTCCCGTTCTGTAGCCTGCGCTGCCATCTCTGCACCATCTGCACCTGTGGCCACTGC
GCTAGACAAGCATCGCAGTAGCACCGTGGGCACGGTGGGTGGGCTACGGGGTGGTGGCGACGAGA
TTGCTACTGAGGCCCAAAGTGACGGGTCCCGACTTTGCCATGAGGGATTTTTTGGCGGGATTCCG
TCGCCCTTTCCCGAGCAATTGCGACAAATTTTCGCGATGAGCTGGTGTACTGGAAGGTGGTGGAG
ATGGTCGTGTGGTGCGATCGTGGAGAAGGCCATTGTTCTAGGCACTGTGAGGCGCCGGTAAGCAA
TGTTCTGAGCTTGCTGCGTCGCCTACGTAGACGGTGGTCACAAACCGAGCAAGGTGATTGAATTA
CCCGAACTCTCCGCTCGCTCTCTTCCACTCTCTGCCAGCTCTCCG
Right flanking sequence: Indices 175280 -- 175779
TTAACTTCCCTTCTTACCACTCTATCCAATCTCTCCACTCTCCACTAACTCTTCCCAACCACTCC
ACTCTTACTCAATTATGTATATTTAATAGTACATTATCAGCGCAAAGGCCGCCCAGACACCCGAA
CTCTATCACCAACATTAGAGCACCCGTGCCACCCTCGCGCCCAGTGTTGGGTCGTAAAGGCAAAT
AAAAAACATCAGTCAATGCAAATGGAACCACGGCGGCAGGTTATTTTTTTTTCTTTTTTGGTGCC
CCCGTAACCCCGAACCAAACTCGCTCCTCTACTTCTCCTCGTCCTTCTTGGCGTCGGCCGCGGGC
TGCTGGGGAGTGCCCAGCGCCGGCTGTTGCGGGGTGCCCAGTGGCTGCTGGGGCGTGCCCGACAC
CGGCTGTTGAGGAGTGCCCAGCGCCGCCGCCTGGGGCTGCTGCGGCGCCTGCCCGTACAGGTAGC
CGTACATCTGGGTGCCCTGGTTGTAGGCCAGGTAGTTGGGGGCCA
Found at i:175641 original size:24 final size:23
Alignment explanation
Indices: 175602--175695 Score: 70
Period size: 24 Copynumber: 4.0 Consensus size: 23
175592 GTCGGCCGCG
*
175602 GGCTGCTGGGGAGTGCCCAGCGCC
1 GGCTGTTGGGG-GTGCCCAGCGCC
*
175626 GGCTGTTGCGGGGTGCCCA--G-T
1 GGCTGTTG-GGGGTGCCCAGCGCC
* *
175647 GGCTGCTGGGGCGTGCCC-GACACC
1 GGCTGTTGGGG-GTGCCCAG-CGCC
*
175671 GGCTGTTGAGGAGTGCCCAGCGCC
1 GGCTGTTG-GGGGTGCCCAGCGCC
175695 G
1 G
175696 CCGCCTGGGG
Statistics
Matches: 54, Mismatches: 8, Indels: 16
0.69 0.10 0.21
Matches are distributed among these distances:
20 3 0.06
21 13 0.24
22 1 0.02
24 31 0.57
25 6 0.11
ACGTcount: A:0.09, C:0.31, G:0.45, T:0.16
Consensus pattern (23 bp):
GGCTGTTGGGGGTGCCCAGCGCC
Left flanking sequence: Indices 175102 -- 175601
AGGCACTGTGAGGCGCCGGTAAGCAATGTTCTGAGCTTGCTGCGTCGCCTACGTAGACGGTGGTC
ACAAACCGAGCAAGGTGATTGAATTACCCGAACTCTCCGCTCGCTCTCTTCCACTCTCTGCCAGC
TCTCCGTCCACCAACTCTATCCACCACTCTTTCCACCCGCTCTATCCATTAACTTCCCTTCTTAC
CACTCTATCCAATCTCTCCACTCTCCACTAACTCTTCCCAACCACTCCACTCTTACTCAATTATG
TATATTTAATAGTACATTATCAGCGCAAAGGCCGCCCAGACACCCGAACTCTATCACCAACATTA
GAGCACCCGTGCCACCCTCGCGCCCAGTGTTGGGTCGTAAAGGCAAATAAAAAACATCAGTCAAT
GCAAATGGAACCACGGCGGCAGGTTATTTTTTTTTCTTTTTTGGTGCCCCCGTAACCCCGAACCA
AACTCGCTCCTCTACTTCTCCTCGTCCTTCTTGGCGTCGGCCGCG
Right flanking sequence: Indices 175696 -- 176195
CCGCCTGGGGCTGCTGCGGCGCCTGCCCGTACAGGTAGCCGTACATCTGGGTGCCCTGGTTGTAG
GCCAGGTAGTTGGGGGCCAGCGACCCGGCGTACGGCTGCTGCTGGTAGTACAGCGCGTTCTGGTA
GTACGGCTGCTGCTGCGTCTGCTGCTGCCCGTACCCCTGGTACATCTTCATCGGGTCCGCCTGGG
TCTGCGCCGCGGGCTGCGACGGCAGCGCGTGCGACTGCGACCCGTTGGAGTACAGCGCGTACTCC
AGCAGCGACTGCGGCGCGGTGCCCTGGTAGAACAGCGCCTGCTGGGTGGGCGGGGTCAGCAGCGC
CGCCTTGACGGCACCGGCGGTGTTGGGGGTGACCCCGGTCTGGATCACCCGCTTGATGTCGCGCA
CAAACAACGGGTACAACAAGTCGACGATCCCCTCGCGCTGGGCCATGGCAAGCGCCCGCTCAAAC
GGAATCCACACCCCCTTCAAGTGCATCAGCCCGATCTTGACCACG
Found at i:175673 original size:45 final size:45
Alignment explanation
Indices: 175602--175690 Score: 126
Period size: 45 Copynumber: 2.0 Consensus size: 45
175592 GTCGGCCGCG
* * *
175602 GGCTGCTGGGGAGTGCCCAGCGCCGGCTGTTGCGGGGTGCCCAGT
1 GGCTGCTGGGGAGTGCCCAGCACCGGCTGTTGAGGAGTGCCCAGT
*
175647 GGCTGCTGGGGCGTGCCC-GACACCGGCTGTTGAGGAGTGCCCAG
1 GGCTGCTGGGGAGTGCCCAG-CACCGGCTGTTGAGGAGTGCCCAG
175691 CGCCGCCGCC
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
44 1 0.03
45 38 0.97
ACGTcount: A:0.09, C:0.29, G:0.45, T:0.17
Consensus pattern (45 bp):
GGCTGCTGGGGAGTGCCCAGCACCGGCTGTTGAGGAGTGCCCAGT
Left flanking sequence: Indices 175102 -- 175601
AGGCACTGTGAGGCGCCGGTAAGCAATGTTCTGAGCTTGCTGCGTCGCCTACGTAGACGGTGGTC
ACAAACCGAGCAAGGTGATTGAATTACCCGAACTCTCCGCTCGCTCTCTTCCACTCTCTGCCAGC
TCTCCGTCCACCAACTCTATCCACCACTCTTTCCACCCGCTCTATCCATTAACTTCCCTTCTTAC
CACTCTATCCAATCTCTCCACTCTCCACTAACTCTTCCCAACCACTCCACTCTTACTCAATTATG
TATATTTAATAGTACATTATCAGCGCAAAGGCCGCCCAGACACCCGAACTCTATCACCAACATTA
GAGCACCCGTGCCACCCTCGCGCCCAGTGTTGGGTCGTAAAGGCAAATAAAAAACATCAGTCAAT
GCAAATGGAACCACGGCGGCAGGTTATTTTTTTTTCTTTTTTGGTGCCCCCGTAACCCCGAACCA
AACTCGCTCCTCTACTTCTCCTCGTCCTTCTTGGCGTCGGCCGCG
Right flanking sequence: Indices 175691 -- 176190
CGCCGCCGCCTGGGGCTGCTGCGGCGCCTGCCCGTACAGGTAGCCGTACATCTGGGTGCCCTGGT
TGTAGGCCAGGTAGTTGGGGGCCAGCGACCCGGCGTACGGCTGCTGCTGGTAGTACAGCGCGTTC
TGGTAGTACGGCTGCTGCTGCGTCTGCTGCTGCCCGTACCCCTGGTACATCTTCATCGGGTCCGC
CTGGGTCTGCGCCGCGGGCTGCGACGGCAGCGCGTGCGACTGCGACCCGTTGGAGTACAGCGCGT
ACTCCAGCAGCGACTGCGGCGCGGTGCCCTGGTAGAACAGCGCCTGCTGGGTGGGCGGGGTCAGC
AGCGCCGCCTTGACGGCACCGGCGGTGTTGGGGGTGACCCCGGTCTGGATCACCCGCTTGATGTC
GCGCACAAACAACGGGTACAACAAGTCGACGATCCCCTCGCGCTGGGCCATGGCAAGCGCCCGCT
CAAACGGAATCCACACCCCCTTCAAGTGCATCAGCCCGATCTTGA
Found at i:176518 original size:18 final size:18
Alignment explanation
Indices: 176495--176538 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
176485 CGGGCACGGG
176495 GGCGGCCGAGGCGGTGGA
1 GGCGGCCGAGGCGGTGGA
* * *
176513 GGCGGCGGTGGCGGTGGC
1 GGCGGCCGAGGCGGTGGA
176531 GGCGGCCG
1 GGCGGCCG
176539 CGCCCTGCCC
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.05, C:0.25, G:0.64, T:0.07
Consensus pattern (18 bp):
GGCGGCCGAGGCGGTGGA
Left flanking sequence: Indices 175995 -- 176494
TGCTGGGTGGGCGGGGTCAGCAGCGCCGCCTTGACGGCACCGGCGGTGTTGGGGGTGACCCCGGT
CTGGATCACCCGCTTGATGTCGCGCACAAACAACGGGTACAACAAGTCGACGATCCCCTCGCGCT
GGGCCATGGCAAGCGCCCGCTCAAACGGAATCCACACCCCCTTCAAGTGCATCAGCCCGATCTTG
ACCACGTGACGCACTTTTTCCAGCTTCAAGATGCCGTCGCGGCGGCCACGGGTCATCTGGGCCAC
GTTCAACAACTTGGTGCCGTTGATCATGTTGTTGTCGGCACGACGCACCACCAGCACGTTGTTGG
CGTCCACCTGGTAGCACAACGTCTTTTCGTCCTCCCACATGGTGGTGGTGACGCGCGGGCGGATC
CCGGGCGGCTGGAACTGGCCCACCGTCAGCGCCAGCTGCGCGTTCAACGTGTCGGGAATCGGGGT
GCCCGCCAGGGTGGGCGCGCCCAGCCCGGTGGCTGCGGGCACGGG
Right flanking sequence: Indices 176539 -- 177038
CGCCCTGCCCGTTCTGGTAGTACAGCGACCCTGGCTGCTGGTACATCGGGTAGTTGGGGTACTGC
GGGTACCGGTAGTAGTCCTGGCCCTGCTGGCCCTGCTGGGCCTGCTGGCCCTGCGCCGACGCCTG
CTGTCCCGTCAGCGACGCTGCCGTCTGGTTCTGGTTGTAGTAGTACGGCTGGTTATACTGGTAGT
TCCCGTTCATCACCTGGTGTATGTCGATGATTGAAAAAAGATTTGGGCAGTATCTATTTGTTTTT
TCAAACTGATTTTTTTTGTGTCTGATGACGGTATCTGCGCGCTGGGTTAGCAGGCAAAGTTTGAG
AAAATATGCGAAATTTTTTGGGATGGCGGAAGCAACGGATGGCGGGGGTTTGCCGGGGCCGGGGG
CGCCGCGAGCGGGTGGCGGTGGGTGCTATGGGTTGCCGGGGCGCCAAGCGCCTCCGCACCCGCTC
CATCTGGCGCTACATGCCTGTGCGCTGCTGTTCTCTCGCAGTGGT
Found at i:176635 original size:9 final size:9
Alignment explanation
Indices: 176621--176657 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
176611 GGTAGTAGTC
176621 CTGGCCCTG
1 CTGGCCCTG
176630 CTGGCCCTG
1 CTGGCCCTG
*
176639 CTGGGCCTG
1 CTGGCCCTG
176648 CTGGCCCTG
1 CTGGCCCTG
176657 C
1 C
176658 GCCGACGCCT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.00, C:0.43, G:0.35, T:0.22
Consensus pattern (9 bp):
CTGGCCCTG
Left flanking sequence: Indices 176121 -- 176620
CGCTGGGCCATGGCAAGCGCCCGCTCAAACGGAATCCACACCCCCTTCAAGTGCATCAGCCCGAT
CTTGACCACGTGACGCACTTTTTCCAGCTTCAAGATGCCGTCGCGGCGGCCACGGGTCATCTGGG
CCACGTTCAACAACTTGGTGCCGTTGATCATGTTGTTGTCGGCACGACGCACCACCAGCACGTTG
TTGGCGTCCACCTGGTAGCACAACGTCTTTTCGTCCTCCCACATGGTGGTGGTGACGCGCGGGCG
GATCCCGGGCGGCTGGAACTGGCCCACCGTCAGCGCCAGCTGCGCGTTCAACGTGTCGGGAATCG
GGGTGCCCGCCAGGGTGGGCGCGCCCAGCCCGGTGGCTGCGGGCACGGGGGCGGCCGAGGCGGTG
GAGGCGGCGGTGGCGGTGGCGGCGGCCGCGCCCTGCCCGTTCTGGTAGTACAGCGACCCTGGCTG
CTGGTACATCGGGTAGTTGGGGTACTGCGGGTACCGGTAGTAGTC
Right flanking sequence: Indices 176658 -- 177157
GCCGACGCCTGCTGTCCCGTCAGCGACGCTGCCGTCTGGTTCTGGTTGTAGTAGTACGGCTGGTT
ATACTGGTAGTTCCCGTTCATCACCTGGTGTATGTCGATGATTGAAAAAAGATTTGGGCAGTATC
TATTTGTTTTTTCAAACTGATTTTTTTTGTGTCTGATGACGGTATCTGCGCGCTGGGTTAGCAGG
CAAAGTTTGAGAAAATATGCGAAATTTTTTGGGATGGCGGAAGCAACGGATGGCGGGGGTTTGCC
GGGGCCGGGGGCGCCGCGAGCGGGTGGCGGTGGGTGCTATGGGTTGCCGGGGCGCCAAGCGCCTC
CGCACCCGCTCCATCTGGCGCTACATGCCTGTGCGCTGCTGTTCTCTCGCAGTGGTCGCGTTATC
TGTCCAGCGCAACCCAAACAAGAAAAGGAGGTGGGTACGAAAAAATAATTAGCCCACGGTCGAAA
CCGACGACACAACCACGGTTCCGAGAAAATAATGAGCGAGGGTAG
Found at i:177248 original size:14 final size:14
Alignment explanation
Indices: 177229--177258 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
177219 CGGAGAGAGG
*
177229 GGTGTAGGCGCGGT
1 GGTGTAGACGCGGT
177243 GGTGTAGACGCGGT
1 GGTGTAGACGCGGT
177257 GG
1 GG
177259 CAGTGGAGAG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.10, C:0.13, G:0.57, T:0.20
Consensus pattern (14 bp):
GGTGTAGACGCGGT
Left flanking sequence: Indices 176729 -- 177228
GTAGTTCCCGTTCATCACCTGGTGTATGTCGATGATTGAAAAAAGATTTGGGCAGTATCTATTTG
TTTTTTCAAACTGATTTTTTTTGTGTCTGATGACGGTATCTGCGCGCTGGGTTAGCAGGCAAAGT
TTGAGAAAATATGCGAAATTTTTTGGGATGGCGGAAGCAACGGATGGCGGGGGTTTGCCGGGGCC
GGGGGCGCCGCGAGCGGGTGGCGGTGGGTGCTATGGGTTGCCGGGGCGCCAAGCGCCTCCGCACC
CGCTCCATCTGGCGCTACATGCCTGTGCGCTGCTGTTCTCTCGCAGTGGTCGCGTTATCTGTCCA
GCGCAACCCAAACAAGAAAAGGAGGTGGGTACGAAAAAATAATTAGCCCACGGTCGAAACCGACG
ACACAACCACGGTTCCGAGAAAATAATGAGCGAGGGTAGCCCGCGGAGATAGACGTGGTACGATA
GTGGGGGACGGGCCGGTGTCGTGGCGGTGGGTGGGCGGAGAGAGG
Right flanking sequence: Indices 177259 -- 177758
CAGTGGAGAGGCGCGGTGAAGAGGGGTGGTGGAGAGGGGCGGTCGTGGTGGTAGTAGATGCGGTG
GCGGGTCGTGGCGCCGGTGGTCTTGGAATCACGGCGTTTCTTGGTAATGGAACAGGTGTCTTGGT
TCGTCTACCGAGTGTCTGTAACCTCTGGCGGTGTCGTCTACGGTGCTCATTCTGTGGTCATCGCT
TTTCTCGGGCCGCCTTGTTCTCCTGCTCGCTGTTCTCCTCCTTCTCCCTCCTTCTTCCTCCTTCT
ACCGTCTCGTTCGCTCCTTCTTCCGGTGGCTCTGCTCGCTATGCCGTGCCAATATTTTTTAGACT
ACTTTCAGTGGTGCCGTTCGCCTCGGATGAGCTCCCAGGACCCCGTCTCGCGACTACCCGGCTCT
ACACCCACTACATATCCTCTGGGGCCTCCACTGGTGGCTCCCCCCACCACCCTGCTCGTCGCGTG
CTCCGTCCGCGCCTTCGTCTGTATTATTTCTCTCTGCCCATTTAT
Found at i:179427 original size:21 final size:21
Alignment explanation
Indices: 179403--179449 Score: 85
Period size: 21 Copynumber: 2.2 Consensus size: 21
179393 ACAGAACATC
179403 GCGGTAGTAGGGCTTTCGGGG
1 GCGGTAGTAGGGCTTTCGGGG
179424 GCGGTAGTAGGGCTTTCGGGG
1 GCGGTAGTAGGGCTTTCGGGG
*
179445 ACGGT
1 GCGGT
179450 GGCGGCTCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.11, C:0.15, G:0.51, T:0.23
Consensus pattern (21 bp):
GCGGTAGTAGGGCTTTCGGGG
Left flanking sequence: Indices 178903 -- 179402
ACGTAGGCACCGCCGTTGGCTGTCGCGAGCCAAACGGGTTGTACACCGGACGTGGGGGGAGATCA
GCGGGACGGAGGTACAGGGCAATGAAACTGGCGACGTCGCGGGCCACGTCCGCTGCAGGAACGGC
GATGGCGTCGGGATACACCACCACTTGGTCGAGGCCCGGGCACTCCACCATCAGCATCGCCACCG
GGTGGTCGGGGTCCAAGTGCGTCCGTTTGAGTCGGGCAAACTCTGCGGTGAGCGACTCGGGGATG
AGCTCGACCTTGCTCGGGAGCTCGGCCACGGGCGCGGTGGCGGGCACGAGGACGTGTTTGTAGAG
CACGGGCTTGGTTCCGTTGAGGTTGGTGGTGGTGTCGATGGGCTGGGGAAGCACGGGATCAGCGC
ACCCGCACTCGATGGGGCACCGGTCAATGACGTCGAAGCCTTTCGTCAGCATCGGTCGCGGGCCT
GCGAGCGTCCGGGGCGCCCAGCGCGAAGCACGTATACAGAACATC
Right flanking sequence: Indices 179450 -- 179949
GGCGGCTCAGCGCGTTAAGGGTACCACCTTTATACCGCGGTGATCTAGTGGTTGTCGACGCGTCG
GAACCGGGCCGAGTCTGCAGGTCTGGGCGCCTCGCGTGTGCGTCCAGCGGTGGATGGGTGGGTGG
GCGAGTCGGGCGGGCCCGTGGGTGCTACAAGCAGTCTCTTTGGGCCGGGTAGAGTCTCTATTTGC
GTAGATTACTGGGCATTCGTAGTTTGGCTCTTACGATTACGACATTCCGATACATCGGGCAGATG
CGAGATGGACGAGGCAGACGGGCACACCAGTAACCCCGTCAAGCGGAGTTAAGCGGGATAGACGA
TTCAGCAGCGTGATCCCATTGGCGGGCACAGCACATTAGTAAGCGTTTGGGAGTCTGCGGTGCCC
GGATCGGCCGATGAGGTCCCAATTGGTGACTGTTCCCGGTGATGCCAAGCGATCTGGTGTAACTC
GCCGAGCACGACGGTGGTGTATTTGCCTAGGGCGTTCTAGATATT
Found at i:181357 original size:17 final size:17
Alignment explanation
Indices: 181335--181369 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
181325 CCTTCAACGA
181335 CTAGAGAACGCTGCACC
1 CTAGAGAACGCTGCACC
*
181352 CTAGAGAATGCTGCACC
1 CTAGAGAACGCTGCACC
181369 C
1 C
181370 AAGCACTACA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.29, C:0.34, G:0.23, T:0.14
Consensus pattern (17 bp):
CTAGAGAACGCTGCACC
Left flanking sequence: Indices 180835 -- 181334
GGCTCGGACCCTCGCTGCGGGGGGCTGGGTGTTTATAACGAGTAACGACAGCCACGGTTGGCACG
ACAACGCGATGATCGTGTACTTGGTGCTTTCGTTGGTGTACTACGTGGCGGTGGCGGCCAAAACG
AGCCGGAGCCACCCGTGTTCACGGTGGTTCTCGCGGTGTCTCGTGGCGTTTGTTGCGAATATCGC
CCCGTTGGGGTGGTGCTACTGGCGCCACAAGGTGCTCCGGGTGGCTGGTGCCTACTCGTGGTACG
CGGTGTTTGAGTGGTTGATGGTGGCCATCGACGTGGCGTTTGATTTTCGGATTGGGGAGTTGGCG
GGCACCAGTGTGAGCTTTGTAGCCCCAGCGGAACCCAAACTGGCGTGACAGAAGCGCTACTGAAT
ATGTGGTAGAAGGCTTACGGATTTAACCCATTCACTTAAAACACCTATATAGAGAGACATTACAC
GATTTACGAGATCGAAGCTTTCGTACGTCTCATGTCCTTCAACGA
Right flanking sequence: Indices 181370 -- 181869
AAGCACTACAGAGTAGCGACCGAACAGCCAGACGCAGTGGCGGTGCATGGCAAAGCCCGACCGAC
ATGGTAGGGTCCTGGCATATCTAATAGATTGCGGGACGTCATTGCCTGCCTCGCAGAACACATCA
ACTAGGATGGTGGCGGTGGCCTTGCGGTAACGTGCGTGATAGCCTCAGGGACTACCGTGGGTCTA
GTGATTGTGGTTGCGCTTGTTTAGAGGTGAATTATAGCTATAATTAGAAAAATACTTTTGCATCT
TAGCTCCGAATGACTCCGTAGGCTGCTGACGTCACCGTCCAGACTCGTCCCTGATCATTCCTAGT
CCACTCCCCTCCCCTCTCCTCTCCTCTCGGAGACACACACGCCACCAGCACCTAGTGGCAAACGA
TGGCAACCGCGGGGTTCCGCAACCAACGGAAACAACGCAAAAACACCAACGAGCCAAAACAAACA
CTTTAGACTACACAACCAGCACAGCATAACCTACATACACAACAC
Found at i:184801 original size:15 final size:15
Alignment explanation
Indices: 184781--184827 Score: 58
Period size: 15 Copynumber: 3.1 Consensus size: 15
184771 TCCCGAGAGA
184781 GAAGAGGAGAAGGGG
1 GAAGAGGAGAAGGGG
*
184796 GAAGAGGAGAATGGG
1 GAAGAGGAGAAGGGG
* * *
184811 GACGAGAAGGAGGGG
1 GAAGAGGAGAAGGGG
184826 GA
1 GA
184828 CGAGCCTGAG
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
15 27 1.00
ACGTcount: A:0.38, C:0.02, G:0.57, T:0.02
Consensus pattern (15 bp):
GAAGAGGAGAAGGGG
Left flanking sequence: Indices 184281 -- 184780
CTGAGCTCGCGGCGAGCTACGGGTTGTATAGCGAGATCGTGGAGGAGGAGCCCCCGAAGAAGGCC
AACGGCGCCGGCAACGGCGCTACCGCTGCCCCCACGGGATCGGTAGTGGTGGCAGTGCCGCCCAG
TGGCGTAGAGCTCCCCGAAATGCTCATTGCCGAGGCCATCACCATCCGGGACGAGGCCGCGGAAA
AGGCGTACGAGGTGCGGCTCCGGCGCGAGCAGGCACCCTACAACGGGGTGGTGATCCACGACGTG
TTCTTTGGCATCTCGCACGCGCTGATCGAGACGAAGTTGGGCGAGCCGGGCTTGGTTTTCGAGTG
GTTCAAGGAGCTGTCGTGTTTTGTTACCGACAGCGAGCGGAACGAGGAGCAGTGGTTTGAGTTGA
TGAAGCAGTGGAAGCAGGAGGTGCGGACGCAGCTGCTTGCGTTCGATGTTCAGATGGTGTACGTG
GAAGACGGCGAGATCCACAAGAAGGGGGACAAGCTTCCCGAGAGA
Right flanking sequence: Indices 184828 -- 185327
CGAGCCTGAGGAGAAGGCGAAAGCCGAGGGTGACAGTGGCGAGGAGGATGGGGACCAGCCTAAGG
CGGACGAGATCCCCGAACGAGACCAGCCTGTGGTTGAGAAGGGCCCCATTGATGCTCAGACCGAA
GAGACTCAGACTAAGGAAACTCTGCCCGAGGAAACTCAGACCGAGAAGACTCAGACTGAAGAATC
CCAGTTGACTGAGGTCCAACCCAAGATCTTGTCCGAGGCTTCCTCTGAGAACTTGTCCGGAGTTG
GCCAGGTTGAAGGCCAGGAGCCTCAGACCGAGAGCCAGCAGCTGGAGTCGCTTGACTCCAGCAAG
GGGACTCCCGAGACAAACCCAGACACTCCTGAGACCCCTCTGGAGTCGCCTGACGAGGAGACCCC
CAAGTAATTGCATAGTTTAGCATTAGTCATTATGAACATAAGCAATGAAGCGTGTAGGTTCGAGC
GGCCGTTCTGATATGAAGGACGTTGGAGTGTCTTAAATGTTTTAC
Found at i:184967 original size:15 final size:15
Alignment explanation
Indices: 184947--185020 Score: 62
Period size: 15 Copynumber: 4.9 Consensus size: 15
184937 CCCATTGATG
*
184947 CTCAGACCGAAGAGA
1 CTCAGACCGAAGAAA
*
184962 CTCAGA-CTAAGGAAA
1 CTCAGACCGAA-GAAA
* * *
184977 CTCTGCCCGAGGAAA
1 CTCAGACCGAAGAAA
184992 CTCAGACCG-AGAAGA
1 CTCAGACCGAAGAA-A
*
185007 CTCAGACTGAAGAA
1 CTCAGACCGAAGAA
185021 TCCCAGTTGA
Statistics
Matches: 45, Mismatches: 10, Indels: 7
0.73 0.16 0.11
Matches are distributed among these distances:
14 6 0.13
15 33 0.73
16 6 0.13
ACGTcount: A:0.39, C:0.26, G:0.24, T:0.11
Consensus pattern (15 bp):
CTCAGACCGAAGAAA
Left flanking sequence: Indices 184447 -- 184946
CATCACCATCCGGGACGAGGCCGCGGAAAAGGCGTACGAGGTGCGGCTCCGGCGCGAGCAGGCAC
CCTACAACGGGGTGGTGATCCACGACGTGTTCTTTGGCATCTCGCACGCGCTGATCGAGACGAAG
TTGGGCGAGCCGGGCTTGGTTTTCGAGTGGTTCAAGGAGCTGTCGTGTTTTGTTACCGACAGCGA
GCGGAACGAGGAGCAGTGGTTTGAGTTGATGAAGCAGTGGAAGCAGGAGGTGCGGACGCAGCTGC
TTGCGTTCGATGTTCAGATGGTGTACGTGGAAGACGGCGAGATCCACAAGAAGGGGGACAAGCTT
CCCGAGAGAGAAGAGGAGAAGGGGGAAGAGGAGAATGGGGACGAGAAGGAGGGGGACGAGCCTGA
GGAGAAGGCGAAAGCCGAGGGTGACAGTGGCGAGGAGGATGGGGACCAGCCTAAGGCGGACGAGA
TCCCCGAACGAGACCAGCCTGTGGTTGAGAAGGGCCCCATTGATG
Right flanking sequence: Indices 185021 -- 185520
TCCCAGTTGACTGAGGTCCAACCCAAGATCTTGTCCGAGGCTTCCTCTGAGAACTTGTCCGGAGT
TGGCCAGGTTGAAGGCCAGGAGCCTCAGACCGAGAGCCAGCAGCTGGAGTCGCTTGACTCCAGCA
AGGGGACTCCCGAGACAAACCCAGACACTCCTGAGACCCCTCTGGAGTCGCCTGACGAGGAGACC
CCCAAGTAATTGCATAGTTTAGCATTAGTCATTATGAACATAAGCAATGAAGCGTGTAGGTTCGA
GCGGCCGTTCTGATATGAAGGACGTTGGAGTGTCTTAAATGTTTTACAGGGACCCAGTTTCGTAC
AATTCTCTGATCTCTACGATTCGTTTTGAGCTTTAGATTATCCGTTGGGTTGGTTGCAACTTTAA
AGCCAACCATTCGTTATCATCAATACAGAAACTGTAGGCGTAAACTGCACTGGCATGTGCAGCCC
ATCTAACAGTCAGTCTACTTACAAGCAAATCGCATATTTTTAGAA
Found at i:188526 original size:8 final size:8
Alignment explanation
Indices: 188513--188559 Score: 67
Period size: 8 Copynumber: 5.9 Consensus size: 8
188503 GCGTTTGCTA
188513 CATAGCCT
1 CATAGCCT
188521 CATAGCCT
1 CATAGCCT
188529 CATAGCCT
1 CATAGCCT
*
188537 CATAGACT
1 CATAGCCT
* *
188545 CGTAGCTT
1 CATAGCCT
188553 CATAGCC
1 CATAGCC
188560 ACACATGATC
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
8 33 1.00
ACGTcount: A:0.26, C:0.34, G:0.15, T:0.26
Consensus pattern (8 bp):
CATAGCCT
Left flanking sequence: Indices 188013 -- 188512
CTGTCTTGGCTGATCGGTTCCTTGCATTCTGGCTTGGCTCTTCTCGGGATCAAGCCAGCTATCCC
GTACGGCCTCCACACAAGCCATTCGCTTATATACCTGACGTTTCTTTTCCAAAAACGCCTATTTT
TAGCCCCAGCCAGCATTACGCGGAAAATTATTAAGGCCAGGGGTCGGACACGACACTGCTGGGGA
CAAGGGAAGGTAGAAGAGGTAGCGAGAGGAGGGGACGTAGCGAACGATTACTCGAATAGCAATTG
GTCCAGGTTGATTTTGTATGACCCAAGTGTGGTTGCCAAACCTTATTTCACCTAGGCTCGGTTGT
GTGTAACGGGCGCGGGCTGGCTAAAATCAAGAATTACGAACTGGAAACTACGAGGAATGTAGCCA
CGACCAGCGAGAAGACAGCACCAGTAGAGGTGAAACAGGAGCAGCAATGCAACAAAATCAGTTGA
CCTTGTCCAAGCGATTGCTGTGATCAGTGACTACAGCGTTTGCTA
Right flanking sequence: Indices 188560 -- 189059
ACACATGATCTGATGTAACCCAACTGGTAGTTGCTCACCAACACCAACTAGGTTCTATTTTCTGA
TGACGACTAAGCCCCAATTACAATCAGGAAGGGAGTCCCCGGTAGTTAGGACACCTGGAATGGGC
TTAGTTTCAACCTGGAATTCACTAAGCGACCTGCTGGTAAATCTTTTGTGTCCCATCATACCCAT
CACCAGCTCGTATTAGCGTGTGGTCAGGCTATTCTTGCACGATTCTGCTATTGTTTCGAGACAAT
AGAGGTAAGCCGCGCCAGCTCGGGAACGACTACGAGACGAACCGTCGGGTGGCGATTGTTTCGTG
GAGTAACCATCAAGGTCCACGTACCCCTTTTCCATGTATCCACCTTCTCTACATTCTTTACACCG
TAAGCCTCCAGTTAGCCTCGTTCGCTACATCCCCCTTCCTCGGGTTCCCCCCTTACCTACCGTTT
GAATCAGGAACTTACATATGCACACACTAATTTGATTCACCAGCA
Found at i:198347 original size:13 final size:13
Alignment explanation
Indices: 198329--198357 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
198319 TACACAATTC
198329 AGAGAGATGGCCA
1 AGAGAGATGGCCA
198342 AGAGAGATGGCCA
1 AGAGAGATGGCCA
198355 AGA
1 AGA
198358 ACAATACAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.41, C:0.14, G:0.38, T:0.07
Consensus pattern (13 bp):
AGAGAGATGGCCA
Left flanking sequence: Indices 197829 -- 198328
TTCGCAAATAGTGACGCCCATCAACAGGCGATTGTCTGATTATCGACAACTTTATGTTGTTTTAG
ATGGCCCTACAGACTCTTATTCTAACCTGATTTTCATGTGCCAGTGCTGTAAATCCTATTCACGT
TGGACAAAACTCACTGGTTAGGTCGATTCGAATGATCAGTTAGGGACCCTCAAAAAGTGGAAATA
AAGCTCAATTTTGAACTCCTCACCGCACTAGAGGTCCATAATACTTGGCAACGTTTCTACCCCTT
TCCCTCCACGCGGAAGAGGAGCCAATCTCTCTTGAAGTGCCCCGAGACCTCCACAAGTGAATGTC
ACATTTGAGCGAAAAACCCCGCAAATATTTTCTTTTGGTAAAGAGTATCCACTGGCCACTTGAAG
GGGTGAAGTAGTAGGGGCTTGGAAGCATATCGTAGAGCTGGTCGAGTTCTATTGATACATCCTCA
TCACTTTGGGGACTATACACCTGCTCGAAGCAAGGTACACAATTC
Right flanking sequence: Indices 198358 -- 198857
ACAATACAATTTGAGACAGACCTGATTTGTTCCAACCCGACGACATTATTTTCTAACCGTTGGCT
GCGAAAATCGGATTTAAAAGAGGATAAATACCGCTTCCAAACCACCTAGACACCATGAAGTTTTT
CACTCTTTTGATTGCTTTAATTGGCGTGGTACATGCGACCACAGTGATTGATTACCCCCGGCGCG
AAGGCGACAAGGCCACGGTGCAATTGGGTGATGTAATCGTAAAGAACGAGAACTACTGGTCTATT
TTCCGGGCTCGCTTTGTTTACTTGTTCGGCTCGATTACCGTTGAAGACATTGCAGGAATTTACGT
CTCGTCCGACGATGGCTCGAACGGGTTGCGTGTGGCTGTCACTGGTTTCCTCAGCTCCATTGAAA
ACCATGGGACCTTTTTGTTCAACTCGGTCAAGTCTCGTTCTGGGTTCTTTTACGACATCTACGCC
AGTAACTTTAAGAACTATGGCCAAGTATTCCTCAAAGGCGACTCT
Found at i:203059 original size:14 final size:14
Alignment explanation
Indices: 203040--203066 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
203030 GCACATCTAC
203040 CCACACCACCCAAA
1 CCACACCACCCAAA
203054 CCACACCACCCAA
1 CCACACCACCCAA
203067 CCCCCCTCCC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.41, C:0.59, G:0.00, T:0.00
Consensus pattern (14 bp):
CCACACCACCCAAA
Left flanking sequence: Indices 202540 -- 203039
GGCCATAGTGGTGTTTCGGCTGGAAAAAGGCCTCGTTCCGCGAGGAGATGGTGTTCCCCGTCATC
GTGCCTGCACTGTGGAGTGAAATTTCGTGCGGCGGATTTGAAGAGGATGGAGGTGGTGAGGTAGA
GGGAAAGGGGAGGATGCGACGGACTGGAGGAGGGAAGAGGAGGGGAGAGGAGGAGTACGGCGAGA
ATGGAGGGTTTAAACAAAGGGGGCTCTAGGAAAGTTATGAATTTTCGTGTAAGATATTGGTCTAT
GCACTTGGTGCCAGTGCGATTGCACACGAGCACGTAACGGTGGAGAGATATCAGAGAAAACAAGG
AAGCAAAGAATGACATTAAGGAAGCGACATAACAGCATCCCATAGAGCGGTAACACTTTTGAAAT
AGACCTAAACTCTCACCGGACTTCCAGTTTCTCATCAACGAACTTGCCAACCACATTCACTACAC
CCATCACTTCACCACAACCACTACAATCACCACCAGCACATCTAC
Right flanking sequence: Indices 203067 -- 203566
CCCCCCTCCCCTTCCCCTTCCCTTCCCTTTTTCTTCGCCCTCCGCCTTATCTCTAGCTCATCTCT
ACGCACCACCCTTACATAATCAGCCGCACTCAGCTCATCGCGAAATAAACCGTCTCCACCTCTCC
TCCAGCCATGGGTAAAATCACAAAGAAGAACGCCAAGGGCCGGTTGGACAAGTACTACTTTCTCG
CCAAGGAGAAGGGGTACCGTGCCCGGTCCTCGTTCAAGATCGTGCAGATCAACGAGAAATTCGGC
CACTTTCTCGAAAAATCAAAGGTGGTGATCGACCTCTGTGCCGCCCCTGGGTCGTGGTGTCAGGT
GGCGCTGCAGTTGTGCCCGGTCAACTCGCTCATCATCGGTGTGGATATCGTTCCCATCAAGCCGC
TTCCCAACTGCATTACTTTCCAGTCCGATATCACCACCGATGACTGTCGGTCGAAACTCAGAGGT
CATATGAAGACGTGGAAGGCTGACACGGTGTTGCACGACGGTGCG
Found at i:205774 original size:9 final size:9
Alignment explanation
Indices: 205762--205819 Score: 80
Period size: 9 Copynumber: 6.4 Consensus size: 9
205752 GGTAGGGTGC
205762 AAAGGGAGT
1 AAAGGGAGT
205771 AAAGGGAGT
1 AAAGGGAGT
*
205780 AAAGGGAAT
1 AAAGGGAGT
*
205789 ACAGGGAGT
1 AAAGGGAGT
*
205798 AAAGGGAGA
1 AAAGGGAGT
*
205807 AAAGGGAGC
1 AAAGGGAGT
205816 AAAG
1 AAAG
205820 AAAGCAAATA
Statistics
Matches: 43, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
9 43 1.00
ACGTcount: A:0.48, C:0.03, G:0.41, T:0.07
Consensus pattern (9 bp):
AAAGGGAGT
Left flanking sequence: Indices 205262 -- 205761
CGCGACCACGACAACCTCCCGGCGTGGTTTGTCGAGGACGAGAAACGCCACCTGAAGATCATCAA
GCCCGTGACCAAGGAGGCGATGCAGGCGCTCCGCGAGAAGCAGAAGCAGCTCAACGCCCGGCCCA
TCAAGAAGGTGCTAGAAGCGCAGGGCCGCAAGAAGATGCGGGCGTTGCGGCGGATGGAGAAGCTC
AAGAAGAAGCTGGACTTGATCAACGAGGACCTGGGCGTTTCCGAGGCCGACAAGCTGGCGGAGAT
CGCCAAGTTGATGCGCAAGTTCACCAAGAAGCAGAAGGTGAAGCCCAAGATCACCGTGGTGAAGG
CTGCGGGCAACAACCGCGGTCTTCTGGGCCGGCCTCGTGGCGTCAAGGGTAAGTATAAGATGGTG
GACGGTGTGCTGAAGAACGAGCAGCGGGCGTTGAAGCGGATCGCGAAGAAGAAGGGCAAGAAATA
GGTTAGTAATAGACATGTATGAGTTTAGGCTACTGGGTAGGGTGC
Right flanking sequence: Indices 205820 -- 206319
AAAGCAAATAGCCTAGGAGAGGGGATATACGGAGGCTTTGCCCATGGTAGCGTTAAGGAGCTATA
GATTAGGGACGTGAAATTTAGGGATCTTGTCTCAGCAAGGGATTAAGTTTGAAGCTCAGTTTGAG
TGGTATTCTAACCCGCTGCTTGATTGGGAAGAATACCCGGATCAATGCATGAAACAGGGAAGGCT
GATAAGACATTCCACAGGTGTCCGAGGCGACTCTCGAACCAGCTATTACGTGTCACTCGTATCAT
AACCTGATGTCCTGACGTGTTTACGTGTCATAACCTGATGTGTTTACGTGTCACACCTGGTGTGT
TTACGTGGTACCTGAGTGGTGCCAGAATCAGTGTCGAGGATTTGCAGCCACACACGACATGCTCG
GTACCTGCATCCCCCGACATTTACCACCACGCCAGCCACGGAGTTTTATGGCAGAATGCCTGGCC
ACAATCTGGTGCTCCTGGCACCACAATTGGCTGATCCGATTGCTG
Found at i:206143 original size:22 final size:23
Alignment explanation
Indices: 206090--206151 Score: 90
Period size: 23 Copynumber: 2.7 Consensus size: 23
206080 AACCTGATGT
*
206090 CCTGACGTGTTTACGTGTCATAA
1 CCTGATGTGTTTACGTGTCATAA
*
206113 CCTGATGTGTTTACGTGTCA-CA
1 CCTGATGTGTTTACGTGTCATAA
*
206135 CCTGGTGTGTTTACGTG
1 CCTGATGTGTTTACGTG
206152 GTACCTGAGT
Statistics
Matches: 36, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
22 17 0.47
23 19 0.53
ACGTcount: A:0.16, C:0.21, G:0.26, T:0.37
Consensus pattern (23 bp):
CCTGATGTGTTTACGTGTCATAA
Left flanking sequence: Indices 205590 -- 206089
CGGGCAACAACCGCGGTCTTCTGGGCCGGCCTCGTGGCGTCAAGGGTAAGTATAAGATGGTGGAC
GGTGTGCTGAAGAACGAGCAGCGGGCGTTGAAGCGGATCGCGAAGAAGAAGGGCAAGAAATAGGT
TAGTAATAGACATGTATGAGTTTAGGCTACTGGGTAGGGTGCAAAGGGAGTAAAGGGAGTAAAGG
GAATACAGGGAGTAAAGGGAGAAAAGGGAGCAAAGAAAGCAAATAGCCTAGGAGAGGGGATATAC
GGAGGCTTTGCCCATGGTAGCGTTAAGGAGCTATAGATTAGGGACGTGAAATTTAGGGATCTTGT
CTCAGCAAGGGATTAAGTTTGAAGCTCAGTTTGAGTGGTATTCTAACCCGCTGCTTGATTGGGAA
GAATACCCGGATCAATGCATGAAACAGGGAAGGCTGATAAGACATTCCACAGGTGTCCGAGGCGA
CTCTCGAACCAGCTATTACGTGTCACTCGTATCATAACCTGATGT
Right flanking sequence: Indices 206152 -- 206651
GTACCTGAGTGGTGCCAGAATCAGTGTCGAGGATTTGCAGCCACACACGACATGCTCGGTACCTG
CATCCCCCGACATTTACCACCACGCCAGCCACGGAGTTTTATGGCAGAATGCCTGGCCACAATCT
GGTGCTCCTGGCACCACAATTGGCTGATCCGATTGCTGCCATGCACCCTTAAAGTCTATTCAGGC
GGCCCTAGTCCGGTTTTTAGACGATTCGAATCTTACGGCATCCCGCGAGTCCGCGGTGTTTCACG
CAGCAATGCCCGACTCCGGGCCACCAAAACTGTAGACAGTGCCACCGACAGGTCACAGACAGGCC
ACCCGGCTGTTTAGGCTAGCGATGGGCTGTGCGATGCGGTGGCAGCATGAAACACCCGGTTTCAC
ATATGAATCACGGCTGCACTAACCTGATACTGCTCCGACACACTGAAACCCGGTAAGATAGGCGA
AACCTCTCACCACCACTCACGACCACCCACCACCATTACCCACCA
Found at i:206158 original size:20 final size:20
Alignment explanation
Indices: 206090--206151 Score: 61
Period size: 22 Copynumber: 2.9 Consensus size: 20
206080 AACCTGATGT
*
206090 CCTGACGTGTTTACGTGTCATAA
1 CCTGATGTGTTTACGTGTC---A
206113 CCTGATGTGTTTACGTGTCACA
1 CCTGATGTGTTTACGTGT--CA
*
206135 CCTGGTGTGTTTACGTG
1 CCTGATGTGTTTACGTG
206152 GTACCTGAGT
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
22 17 0.49
23 17 0.49
25 1 0.03
ACGTcount: A:0.16, C:0.21, G:0.26, T:0.37
Consensus pattern (20 bp):
CCTGATGTGTTTACGTGTCA
Left flanking sequence: Indices 205590 -- 206089
CGGGCAACAACCGCGGTCTTCTGGGCCGGCCTCGTGGCGTCAAGGGTAAGTATAAGATGGTGGAC
GGTGTGCTGAAGAACGAGCAGCGGGCGTTGAAGCGGATCGCGAAGAAGAAGGGCAAGAAATAGGT
TAGTAATAGACATGTATGAGTTTAGGCTACTGGGTAGGGTGCAAAGGGAGTAAAGGGAGTAAAGG
GAATACAGGGAGTAAAGGGAGAAAAGGGAGCAAAGAAAGCAAATAGCCTAGGAGAGGGGATATAC
GGAGGCTTTGCCCATGGTAGCGTTAAGGAGCTATAGATTAGGGACGTGAAATTTAGGGATCTTGT
CTCAGCAAGGGATTAAGTTTGAAGCTCAGTTTGAGTGGTATTCTAACCCGCTGCTTGATTGGGAA
GAATACCCGGATCAATGCATGAAACAGGGAAGGCTGATAAGACATTCCACAGGTGTCCGAGGCGA
CTCTCGAACCAGCTATTACGTGTCACTCGTATCATAACCTGATGT
Right flanking sequence: Indices 206152 -- 206651
GTACCTGAGTGGTGCCAGAATCAGTGTCGAGGATTTGCAGCCACACACGACATGCTCGGTACCTG
CATCCCCCGACATTTACCACCACGCCAGCCACGGAGTTTTATGGCAGAATGCCTGGCCACAATCT
GGTGCTCCTGGCACCACAATTGGCTGATCCGATTGCTGCCATGCACCCTTAAAGTCTATTCAGGC
GGCCCTAGTCCGGTTTTTAGACGATTCGAATCTTACGGCATCCCGCGAGTCCGCGGTGTTTCACG
CAGCAATGCCCGACTCCGGGCCACCAAAACTGTAGACAGTGCCACCGACAGGTCACAGACAGGCC
ACCCGGCTGTTTAGGCTAGCGATGGGCTGTGCGATGCGGTGGCAGCATGAAACACCCGGTTTCAC
ATATGAATCACGGCTGCACTAACCTGATACTGCTCCGACACACTGAAACCCGGTAAGATAGGCGA
AACCTCTCACCACCACTCACGACCACCCACCACCATTACCCACCA
Found at i:206736 original size:67 final size:67
Alignment explanation
Indices: 206628--206761 Score: 196
Period size: 67 Copynumber: 2.0 Consensus size: 67
206618 ACCACTCACG
** * *
206628 ACCACCCACCACCATTACCCACCACTACCTACATACGTACCTACACGTGGTTGTAGCTATTTGCT
1 ACCACCCACCACCACCACCCACCACCACCTACATACGTACCTACACGTGGTTGTAGCCATTTGCT
206693 CA
66 CA
* * * *
206695 ACCACTCACCACCACCACCCACCACCGCCTACATATGTACCTACATGTGGTTGTAGCCATTTGCT
1 ACCACCCACCACCACCACCCACCACCACCTACATACGTACCTACACGTGGTTGTAGCCATTTGCT
206760 CA
66 CA
206762 CTGATAGGGC
Statistics
Matches: 59, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
67 59 1.00
ACGTcount: A:0.26, C:0.40, G:0.11, T:0.23
Consensus pattern (67 bp):
ACCACCCACCACCACCACCCACCACCACCTACATACGTACCTACACGTGGTTGTAGCCATTTGCT
CA
Left flanking sequence: Indices 206128 -- 206627
TGTCACACCTGGTGTGTTTACGTGGTACCTGAGTGGTGCCAGAATCAGTGTCGAGGATTTGCAGC
CACACACGACATGCTCGGTACCTGCATCCCCCGACATTTACCACCACGCCAGCCACGGAGTTTTA
TGGCAGAATGCCTGGCCACAATCTGGTGCTCCTGGCACCACAATTGGCTGATCCGATTGCTGCCA
TGCACCCTTAAAGTCTATTCAGGCGGCCCTAGTCCGGTTTTTAGACGATTCGAATCTTACGGCAT
CCCGCGAGTCCGCGGTGTTTCACGCAGCAATGCCCGACTCCGGGCCACCAAAACTGTAGACAGTG
CCACCGACAGGTCACAGACAGGCCACCCGGCTGTTTAGGCTAGCGATGGGCTGTGCGATGCGGTG
GCAGCATGAAACACCCGGTTTCACATATGAATCACGGCTGCACTAACCTGATACTGCTCCGACAC
ACTGAAACCCGGTAAGATAGGCGAAACCTCTCACCACCACTCACG
Right flanking sequence: Indices 206762 -- 207261
CTGATAGGGCCACCGTCATGACCACGCGATCCCCGATGACACCACCGACGAGCCCACGACCCGTC
CACGACCCGTCCACGACCCCACACCGTCTCGACCGCCCGGAGTTTGCCATACCCCACCTTCCCGG
CGCCGTACGATCCCTCAGGCGATGAGATGTTTAGGGTTTACTTCTTTGCGAATATTTTCAGAGTA
CGAGCCCCCGGACTTCCGTAATCGCCCATGCCAGCGCCCAAACCGGTTCGGGCGAGCAACCCCAC
CGTGGTGGTTACCGTTGCTTGCCACCCCTGGCTCGCCAGAGGCTTGGCCCCTTTGTACCACCTCT
GGTCTCGCGACGATCCTCTCGAAATAGGGATAAGGTTTACCCGCCAAGCCGAACAGAAACAGCAC
ACTGTGGACCAGACGCGTCCGAGCCAAGGCACAGGTGCCATGGGGGCACCTGCTAATGCAGACCC
CAGCGCCGACACTTTCCACCACTGGCATTGGCAAGGCCACGACAA
Found at i:206829 original size:11 final size:11
Alignment explanation
Indices: 206815--206845 Score: 62
Period size: 11 Copynumber: 2.8 Consensus size: 11
206805 ACCGACGAGC
206815 CCACGACCCGT
1 CCACGACCCGT
206826 CCACGACCCGT
1 CCACGACCCGT
206837 CCACGACCC
1 CCACGACCC
206846 CACACCGTCT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.19, C:0.58, G:0.16, T:0.06
Consensus pattern (11 bp):
CCACGACCCGT
Left flanking sequence: Indices 206315 -- 206814
TGCTGCCATGCACCCTTAAAGTCTATTCAGGCGGCCCTAGTCCGGTTTTTAGACGATTCGAATCT
TACGGCATCCCGCGAGTCCGCGGTGTTTCACGCAGCAATGCCCGACTCCGGGCCACCAAAACTGT
AGACAGTGCCACCGACAGGTCACAGACAGGCCACCCGGCTGTTTAGGCTAGCGATGGGCTGTGCG
ATGCGGTGGCAGCATGAAACACCCGGTTTCACATATGAATCACGGCTGCACTAACCTGATACTGC
TCCGACACACTGAAACCCGGTAAGATAGGCGAAACCTCTCACCACCACTCACGACCACCCACCAC
CATTACCCACCACTACCTACATACGTACCTACACGTGGTTGTAGCTATTTGCTCAACCACTCACC
ACCACCACCCACCACCGCCTACATATGTACCTACATGTGGTTGTAGCCATTTGCTCACTGATAGG
GCCACCGTCATGACCACGCGATCCCCGATGACACCACCGACGAGC
Right flanking sequence: Indices 206846 -- 207345
CACACCGTCTCGACCGCCCGGAGTTTGCCATACCCCACCTTCCCGGCGCCGTACGATCCCTCAGG
CGATGAGATGTTTAGGGTTTACTTCTTTGCGAATATTTTCAGAGTACGAGCCCCCGGACTTCCGT
AATCGCCCATGCCAGCGCCCAAACCGGTTCGGGCGAGCAACCCCACCGTGGTGGTTACCGTTGCT
TGCCACCCCTGGCTCGCCAGAGGCTTGGCCCCTTTGTACCACCTCTGGTCTCGCGACGATCCTCT
CGAAATAGGGATAAGGTTTACCCGCCAAGCCGAACAGAAACAGCACACTGTGGACCAGACGCGTC
CGAGCCAAGGCACAGGTGCCATGGGGGCACCTGCTAATGCAGACCCCAGCGCCGACACTTTCCAC
CACTGGCATTGGCAAGGCCACGACAATGTCGTGGTAAGGCGAGAGGCTTACAATAGTCTAAACCT
GAATAAACCACAATAGACACTCTACGAGCCCGTATCGGGGTTCTC
Found at i:208218 original size:13 final size:12
Alignment explanation
Indices: 208200--208229 Score: 51
Period size: 13 Copynumber: 2.4 Consensus size: 12
208190 AGACCCGCAG
208200 CCACCGCCAACAA
1 CCACCGCCAA-AA
208213 CCACCGCCAAAA
1 CCACCGCCAAAA
208225 CCACC
1 CCACC
208230 CACCGCTGGC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 7 0.41
13 10 0.59
ACGTcount: A:0.37, C:0.57, G:0.07, T:0.00
Consensus pattern (12 bp):
CCACCGCCAAAA
Left flanking sequence: Indices 207700 -- 208199
GCAAAAATAGCCGGCGGCCTTCCAGAGAGATAACGGCTCGCCAATCACGGCGATGGCGGGCCAAG
CGAGCCGGCGGAGCCTACGTGGTACCAGAGTCTTGGCCCTTGGCAATTGGCAATTGGCTACTTTT
CTCTTTTTTTTTTTCTTCTTCGTTCTCCTTCCCGTTGACTCCTTTCGTGCCCCACTTTAGACTCC
GCCCGTCCCGGCTGTGTCCACACCGCCCAAAACTGCGATCTCCCCGAAGCACCGTCGCTGCCGCC
GGACATCCGTTGCCAGGGCCTTCCCTACAACCGCCCATAGCCCCACTGTTGCCAACCGGGCGTTT
CTTTTACTTATCGCCGGGCCATCGAAGCCAGACCCCACGATATTTTCCCAATCGGGAGCGTGCGT
TGTTTCTGATTATTTTGTAGTGCACAAAAACGTCATAGTTGACAGGGAGGCAGCGCGGGCTAAGC
GGGAGGCTCCGCAGGACGGGCCCACGCGGCCTCCCAGACCCGCAG
Right flanking sequence: Indices 208230 -- 208729
CACCGCTGGCGCCCCACACCCCTGGCGGCCCCGCCCCACCAAACCCCCGTCACCCCTTCGCTGTG
TGCACACCAACACGTCTCATCCTTTGCCACCTCACTATATACCCGCCGCCCGCGCTCGCAACCCA
TTGTCCCCATGCCGGTCACCAAACACGCGTGTCAGATTGTTTTATTAAGCCATCGGGGGTAGACA
TGCACAAAGCCACCTGGCACGAGGCCCAGCAGGGCGTACGCCATTAACCGGAAGCGGAAACACGC
AAGGGGCGTAGGCACGTAGTCCCCCCGTAACCTTCTCTCCCTGTAACCGCCACCGTGCCAACGGT
CGTTCCCAGCCCCTTCAGGGTCTTTGTCCTTTGCTGCCCATTCCCGGCTAACACATTTTGTCTTT
TGTCGGGCTTGTATGCAAGCGAATATTTTGCTAAATTTGGATTGCTTATAAGCAGAGCCCAGCCG
CCTTTTTTCGACAGATTTGTCTGGTCAACCGCGGGACCCGGTGGA
Found at i:209137 original size:20 final size:23
Alignment explanation
Indices: 209114--209161 Score: 68
Period size: 22 Copynumber: 2.3 Consensus size: 23
209104 GGTCCTATTC
209114 CTGGTCTTT-T-CCTGG-TCCTA
1 CTGGTCTTTATCCCTGGCTCCTA
209134 CTGGT-TTTATCCCTGGCTCCTA
1 CTGGTCTTTATCCCTGGCTCCTA
209156 CTGGTC
1 CTGGTC
209162 ATCCCATAGA
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
19 3 0.12
20 6 0.25
21 5 0.21
22 10 0.42
ACGTcount: A:0.06, C:0.31, G:0.21, T:0.42
Consensus pattern (23 bp):
CTGGTCTTTATCCCTGGCTCCTA
Left flanking sequence: Indices 208614 -- 209113
GTCTTTTGTCGGGCTTGTATGCAAGCGAATATTTTGCTAAATTTGGATTGCTTATAAGCAGAGCC
CAGCCGCCTTTTTTCGACAGATTTGTCTGGTCAACCGCGGGACCCGGTGGATATATGGTTCATTA
GCTGAGAAAGTCTGTTGCATTGCTAGCCCCTAGCGTCCACTCGTTTACCCCGCCCTCTGTTGGTC
CTTTACATCCTGGCTGTTGCTGGCTGTTGCCCCCTGTTTATCGCATAGGTTTTGCCTGGCTATTG
AAACTACTTTGAAAAAACTACTGTGCCGTTTCGAGTCGTACGTGGTTTCTATTAGTGTTGTCTAC
TAGCGTTTGAGTGGTTTATTGGTTTTTATTGTTCCAATAGGTCACCCATTCATCAGGTCCCGAAC
CACCGACCCACGGTCTATCCACAGGTTTAACTAATCACTGACCAAGCCTACAGGTCACCTACTGG
TCCAGCCCATAGACCTAACCACTGGTTCTATTTTTGGTCCTATTC
Right flanking sequence: Indices 209162 -- 209661
ATCCCATAGACCTACCACTGGTCCAATCCACAGGTTCTACCCCAGGTTTACCCACCGGTTTAACC
TATAGGCCCCACAAGTCCTACCCACCGGTTTAACCTATAGACCCTACCCACTGGTTCCCACTGGT
CTTCCCTAGGTCCCAGTCTTCCATAGGTCCCGGTATCCCCTAGGTCCCAGTCTCCATAGACCTAT
CCCACCTCCTACCCACTTGACTCTGGTCTTCCGCAGACCTCCCCATCCCCCGTGTCCACCATTTC
CCTCGTCTCCCCCATTTGCATGGACCACCTCACTGTGTCCACCCCCGGCTCCGTCACCCCGGGCG
CGCCGCGCCGCCCAGCCCACCGCCACCGCCGCCTGGCCGCCATCTCGGGCGACTTCGACGCCATG
GGCCTCGGGCTCTTCCTGCCCGCCCCGCCCAAACTGGAGCTGCTGGCGCCGCTGCCGCACCACGA
GGACGAGCTCGACAAACACTTCAACTTCAACAACGACGACGACTT
Found at i:209312 original size:17 final size:17
Alignment explanation
Indices: 209290--209344 Score: 74
Period size: 17 Copynumber: 3.2 Consensus size: 17
209280 GTTCCCACTG
209290 GTCTTCCCTAGGTCCCA
1 GTCTTCCCTAGGTCCCA
* *
209307 GTCTTCCATAGGTCCCG
1 GTCTTCCCTAGGTCCCA
* *
209324 GTATCCCCTAGGTCCCA
1 GTCTTCCCTAGGTCCCA
209341 GTCT
1 GTCT
209345 CCATAGACCT
Statistics
Matches: 31, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
17 31 1.00
ACGTcount: A:0.13, C:0.38, G:0.20, T:0.29
Consensus pattern (17 bp):
GTCTTCCCTAGGTCCCA
Left flanking sequence: Indices 208790 -- 209289
ACCCCGCCCTCTGTTGGTCCTTTACATCCTGGCTGTTGCTGGCTGTTGCCCCCTGTTTATCGCAT
AGGTTTTGCCTGGCTATTGAAACTACTTTGAAAAAACTACTGTGCCGTTTCGAGTCGTACGTGGT
TTCTATTAGTGTTGTCTACTAGCGTTTGAGTGGTTTATTGGTTTTTATTGTTCCAATAGGTCACC
CATTCATCAGGTCCCGAACCACCGACCCACGGTCTATCCACAGGTTTAACTAATCACTGACCAAG
CCTACAGGTCACCTACTGGTCCAGCCCATAGACCTAACCACTGGTTCTATTTTTGGTCCTATTCC
TGGTCTTTTCCTGGTCCTACTGGTTTTATCCCTGGCTCCTACTGGTCATCCCATAGACCTACCAC
TGGTCCAATCCACAGGTTCTACCCCAGGTTTACCCACCGGTTTAACCTATAGGCCCCACAAGTCC
TACCCACCGGTTTAACCTATAGACCCTACCCACTGGTTCCCACTG
Right flanking sequence: Indices 209345 -- 209844
CCATAGACCTATCCCACCTCCTACCCACTTGACTCTGGTCTTCCGCAGACCTCCCCATCCCCCGT
GTCCACCATTTCCCTCGTCTCCCCCATTTGCATGGACCACCTCACTGTGTCCACCCCCGGCTCCG
TCACCCCGGGCGCGCCGCGCCGCCCAGCCCACCGCCACCGCCGCCTGGCCGCCATCTCGGGCGAC
TTCGACGCCATGGGCCTCGGGCTCTTCCTGCCCGCCCCGCCCAAACTGGAGCTGCTGGCGCCGCT
GCCGCACCACGAGGACGAGCTCGACAAACACTTCAACTTCAACAACGACGACGACTTTGCCGCCA
AGGCACTGGACTTCTCGTTCCCCATGGCCCCGCCGCCGCCTCCAGCCCCGCTGAGCCCGCAAAAG
AAGCCCGTCCTGGCGCTCAACTCGCCCATCCGCCTCGGCAACCCGGGCTCGCACCGCAGAACGCG
GCTGTCGTCGCTGGCGTACCCGCGGCGGACGATCTTTGGCGACCT
Found at i:209963 original size:24 final size:24
Alignment explanation
Indices: 209936--210019 Score: 78
Period size: 24 Copynumber: 3.4 Consensus size: 24
209926 GGCCACCAAT
*
209936 ACTGGCACCGGTAACACCGGCTTC
1 ACTGGCACCGGCAACACCGGCTTC
* * *
209960 ACTGGCACTGGCACCACTGGCTTC
1 ACTGGCACCGGCAACACCGGCTTC
* *
209984 ACGGGCACCGCTGGCAACTCCGGCTTC
1 ACTGGCA-C-C-GGCAACACCGGCTTC
*
210011 GCTGGCACC
1 ACTGGCACC
210020 ACCGGGTTCA
Statistics
Matches: 46, Mismatches: 11, Indels: 5
0.74 0.18 0.08
Matches are distributed among these distances:
24 26 0.57
25 2 0.04
26 1 0.02
27 17 0.37
ACGTcount: A:0.17, C:0.39, G:0.27, T:0.17
Consensus pattern (24 bp):
ACTGGCACCGGCAACACCGGCTTC
Left flanking sequence: Indices 209436 -- 209935
TTTGCATGGACCACCTCACTGTGTCCACCCCCGGCTCCGTCACCCCGGGCGCGCCGCGCCGCCCA
GCCCACCGCCACCGCCGCCTGGCCGCCATCTCGGGCGACTTCGACGCCATGGGCCTCGGGCTCTT
CCTGCCCGCCCCGCCCAAACTGGAGCTGCTGGCGCCGCTGCCGCACCACGAGGACGAGCTCGACA
AACACTTCAACTTCAACAACGACGACGACTTTGCCGCCAAGGCACTGGACTTCTCGTTCCCCATG
GCCCCGCCGCCGCCTCCAGCCCCGCTGAGCCCGCAAAAGAAGCCCGTCCTGGCGCTCAACTCGCC
CATCCGCCTCGGCAACCCGGGCTCGCACCGCAGAACGCGGCTGTCGTCGCTGGCGTACCCGCGGC
GGACGATCTTTGGCGACCTGGCGAGCCCCGCACCCGTGTCGCTGCCAGGCTTGGCCCCGCCCGGC
CTCCCGTTTGCTCCGTTGCCCGGGTCTGTAGCCCTGGCCACCAAT
Right flanking sequence: Indices 210020 -- 210519
ACCGGGTTCACCGGCACCACGCCCAAGCTGGGCGTGATCGACCTCGACGAGATCCTCCGCGCGGA
GCTGGCCTCCACACCGGACGACTTCCTCGCACTGCCGTTCGTCAAGCTGCTGCTGCTGATGCTGG
TGTTGACGCTGCTGCCGCAGTGCCCGCGCGAGGACGCCATCGTCGAGGAGGAGGCCGACGACGAC
GACGCGGTGTGCATCGACGACGCCGCGCTGGTGGACGAGTACTACCTCCACCCGCCGCCGGGCGA
GGTGTACAGCCACGTGCTGGCGCTGCTGCTGATGACGCTGTTGTCCAAGGCCCCGCCGCCGTGGT
CCAACAACAGCAGCCGCGACCTGGTCAAGGGCCTGCCGCCACCGTCGATGGTGCACTCGCGGCGG
CGCTCGCAGGCCATGGCCACGCGCTACCAGGTGTTCTACGACCAGCTGCTGCGCATCAGCAACGC
CATGCGCAACCTGAGCCTGGAGCTGGTGCACTTGGTGCGCACCAA
Found at i:210024 original size:18 final size:18
Alignment explanation
Indices: 209992--210039 Score: 51
Period size: 18 Copynumber: 2.7 Consensus size: 18
209982 TCACGGGCAC
* *
209992 CGCTGGCAACTCCGGCTT
1 CGCTGGCACCACCGGCTT
*
210010 CGCTGGCACCACCGGGTT
1 CGCTGGCACCACCGGCTT
* *
210028 CACCGGCACCAC
1 CGCTGGCACCAC
210040 GCCCAAGCTG
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.15, C:0.44, G:0.27, T:0.15
Consensus pattern (18 bp):
CGCTGGCACCACCGGCTT
Left flanking sequence: Indices 209492 -- 209991
CGCCGCCCAGCCCACCGCCACCGCCGCCTGGCCGCCATCTCGGGCGACTTCGACGCCATGGGCCT
CGGGCTCTTCCTGCCCGCCCCGCCCAAACTGGAGCTGCTGGCGCCGCTGCCGCACCACGAGGACG
AGCTCGACAAACACTTCAACTTCAACAACGACGACGACTTTGCCGCCAAGGCACTGGACTTCTCG
TTCCCCATGGCCCCGCCGCCGCCTCCAGCCCCGCTGAGCCCGCAAAAGAAGCCCGTCCTGGCGCT
CAACTCGCCCATCCGCCTCGGCAACCCGGGCTCGCACCGCAGAACGCGGCTGTCGTCGCTGGCGT
ACCCGCGGCGGACGATCTTTGGCGACCTGGCGAGCCCCGCACCCGTGTCGCTGCCAGGCTTGGCC
CCGCCCGGCCTCCCGTTTGCTCCGTTGCCCGGGTCTGTAGCCCTGGCCACCAATACTGGCACCGG
TAACACCGGCTTCACTGGCACTGGCACCACTGGCTTCACGGGCAC
Right flanking sequence: Indices 210040 -- 210539
GCCCAAGCTGGGCGTGATCGACCTCGACGAGATCCTCCGCGCGGAGCTGGCCTCCACACCGGACG
ACTTCCTCGCACTGCCGTTCGTCAAGCTGCTGCTGCTGATGCTGGTGTTGACGCTGCTGCCGCAG
TGCCCGCGCGAGGACGCCATCGTCGAGGAGGAGGCCGACGACGACGACGCGGTGTGCATCGACGA
CGCCGCGCTGGTGGACGAGTACTACCTCCACCCGCCGCCGGGCGAGGTGTACAGCCACGTGCTGG
CGCTGCTGCTGATGACGCTGTTGTCCAAGGCCCCGCCGCCGTGGTCCAACAACAGCAGCCGCGAC
CTGGTCAAGGGCCTGCCGCCACCGTCGATGGTGCACTCGCGGCGGCGCTCGCAGGCCATGGCCAC
GCGCTACCAGGTGTTCTACGACCAGCTGCTGCGCATCAGCAACGCCATGCGCAACCTGAGCCTGG
AGCTGGTGCACTTGGTGCGCACCAACTCGCAGTCGCTGGCGTTGG
Found at i:211321 original size:14 final size:14
Alignment explanation
Indices: 211302--211352 Score: 93
Period size: 14 Copynumber: 3.6 Consensus size: 14
211292 AGCGAGAGAC
211302 AAGACGAGCACGGG
1 AAGACGAGCACGGG
211316 AAGACGAGCACGGG
1 AAGACGAGCACGGG
*
211330 AAGACGAGCACGGA
1 AAGACGAGCACGGG
211344 AAGACGAGC
1 AAGACGAGC
211353 GAGAGACAAG
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
14 36 1.00
ACGTcount: A:0.39, C:0.22, G:0.39, T:0.00
Consensus pattern (14 bp):
AAGACGAGCACGGG
Left flanking sequence: Indices 210802 -- 211301
GCTGGTGGAGCGGCCCGACAAGTGGGCCGACCCGCGGCGGATGCCGCTGATTGTGGTGTCGGACA
CCCGCAACCTGCTGCCGCTGACCGACGACACCTTCCAGGAGCCCGAGGACACGTTGGTGGAGAAG
CCGGTGACGCCGCCGCCGCGCGCGGTGCCGTTGCTGCCGGCGGCGTCCACCAACACCATCGACGT
GCCGCGGCGGCGTCCCGGCACGTTGGCGCCGATGCGGCACATCAAGGCGAAGCTGGCCAACTTGG
AACACTTGGCGCTGGCGTTTGAAGGACTCCAGACCAAGGAGAAGAAGAAGAAGAAGCGCGGGCTG
AAGTTGATCAACTGGTTCAAGCGGCTCCGCGAGGAGCACCCTAATATTAGCATATAGACATTAAT
GAGACAGATGAAAAGAAGATGCCAAGGTAGGGGTGTGATGGACTACGGGACTAGGTGTAGATGTG
AGGCTGAGAATGATGGGAAAGAGTAAGGGAAGAGGAGCGAGAGAC
Right flanking sequence: Indices 211353 -- 211852
GAGAGACAAGACGAGCACTAGTAGAGCAAGGGACTTGGGAAAATGTCAGAATAGGCGTAAAGAGT
CTCGTGGTATGGAAATATTGAAGAGTGATTCGAATTGAGAATTGGAAAATGATGAGAAGAGTACT
GTAATACTGGTTGGTACCTTAGTAAACAAGGAATTCGAATAAGTCGTTAAATTGAGTGAAATAGA
GACGAGCAGAGCTGTAAACAGTAGCATACACACCGATGGAGACTGGAGCTTTGAACAGTAGCATA
CACACAGATGAGACCGGATGAAGCTGAGAATAGCCAGAAATTGACGAGAAGAGACTAGTAGACAT
GACACAATTGAGTGAGAATGGCACAAAATGGGAACCGAATAAGAACGAGAGCAGCGGATAGACCA
GGATTAGACCAGCACAGAACGATCACTGAAGTAATTATTTTTGACAACCACCGGTCACATGGTGG
CCTTTCACCACCAGTCAGATCGGCTTTGCACAACCTGATGGCGGC
Found at i:211852 original size:21 final size:21
Alignment explanation
Indices: 211828--211884 Score: 98
Period size: 21 Copynumber: 2.7 Consensus size: 21
211818 CCAGTCAGAT
211828 CGGCT-TTGCACAACCTGATGG
1 CGGCTATT-CACAACCTGATGG
211849 CGGCTATTCACAACCTGATGG
1 CGGCTATTCACAACCTGATGG
211870 CGGCTATTCACAACC
1 CGGCTATTCACAACC
211885 CCTTGCGTCG
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
21 33 0.94
22 2 0.06
ACGTcount: A:0.23, C:0.32, G:0.23, T:0.23
Consensus pattern (21 bp):
CGGCTATTCACAACCTGATGG
Left flanking sequence: Indices 211328 -- 211827
GGAAGACGAGCACGGAAAGACGAGCGAGAGACAAGACGAGCACTAGTAGAGCAAGGGACTTGGGA
AAATGTCAGAATAGGCGTAAAGAGTCTCGTGGTATGGAAATATTGAAGAGTGATTCGAATTGAGA
ATTGGAAAATGATGAGAAGAGTACTGTAATACTGGTTGGTACCTTAGTAAACAAGGAATTCGAAT
AAGTCGTTAAATTGAGTGAAATAGAGACGAGCAGAGCTGTAAACAGTAGCATACACACCGATGGA
GACTGGAGCTTTGAACAGTAGCATACACACAGATGAGACCGGATGAAGCTGAGAATAGCCAGAAA
TTGACGAGAAGAGACTAGTAGACATGACACAATTGAGTGAGAATGGCACAAAATGGGAACCGAAT
AAGAACGAGAGCAGCGGATAGACCAGGATTAGACCAGCACAGAACGATCACTGAAGTAATTATTT
TTGACAACCACCGGTCACATGGTGGCCTTTCACCACCAGTCAGAT
Right flanking sequence: Indices 211885 -- 212384
CCTTGCGTCGACCCTTCCCTCAGGTCGAGACCACTCCAACCTTAACCTACAGCCCATGTGATATC
TGCCCCACCTGATCCAATTTAACTTTAATAGTTGTCAACCCAATTTTCCGTTTCGCCCGGACTTC
CTAAAACCCTCGTTCGAAGCCCTATTACGACACGGAGCACCTGCAAGGGTCAAGCGGGGTGCAGC
ATGGCGACGCATCCCTTGACGTCTCCGGGCTCCCAGTCCAGACACTCGTATTCCGTTTGTGATTG
TTCACTGCTGGGAAATTAGGTTCAAATACGCACTGGAGATATCGGAGCCAGCACAAAGCCTGGGG
TGGCTCCTGTTGCCGTCGCCACGTCCACCGCGGATCTCCGTCACAACCAAACCTTATTTCGGTGT
CACATGAGCGTTGTTTGTTTATCTCACCGCTTCTAAGTTTAGCTGGAGGAATTGGCCAATTTTAC
CCTTTTGGGACAAGACGCGTGTGCTGCCAGATATAAGGTTAGCAG
Done.