Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: scaffold51
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 82432
ACGTcount: A:0.22, C:0.29, G:0.28, T:0.22
Warning! 1 characters in sequence are not A, C, G, or T
Found at i:620 original size:21 final size:20
Alignment explanation
Indices: 587--628 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 20
577 CCTGGCCGCG
587 GCCGCAGCCGACCCGCTGGT
1 GCCGCAGCCGACCCGCTGGT
*
607 GCCGCCGCTCGACCCGCTGGT
1 GCCGCAGC-CGACCCGCTGGT
628 G
1 G
629 GTGGCCCAGG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
20 7 0.35
21 13 0.65
ACGTcount: A:0.07, C:0.45, G:0.36, T:0.12
Consensus pattern (20 bp):
GCCGCAGCCGACCCGCTGGT
Left flanking sequence: Indices 87 -- 586
AGGGCCTCGCGGTGCTCAAGAACTTCCTCTGGCGGTACGTGCGCCGCGGGCCCTACCCGTCGCTC
ACCGCCATGGTCACCCCGGCCACCGCGCTCCCGCAGCCCCCGCCGCGCCCCACCCCGGGACCGCA
CTCCCTCCTCCTCCAGCACTTCTACCGCCTCCTCTACCCAGCGCGGCCCCCGACCGCCCCCCCGT
TGGCCCCGCCGCAGCCCCAGGCCAAGCTCATCGACGTCGCCACCAACAAAGCCAAGTACGACTAC
GTCCACCACGACGACCTCTACGACGCCTACACAAAACTACCCCCGGGCACCCCGCTCGCCCCCGC
GGTGCGCCGCCACTTGGTCGACCTGTTCGTCTGGGGCAAGCGGGACTTCACCACTCCCAACGGCG
TCACCGGCGCCTCCCCCTCCGTGTCACGTGACGCGTTCAACGACATGTTGCAAAAGCGCCAGCGG
TTCGTGGGCCAGGTGCAGCGGGTGGTGGCGGACTACCTGGCCGCG
Right flanking sequence: Indices 629 -- 1128
GTGGCCCAGGTGGTGTACTACTCGTTTTTCAAAGACAGAGATGACGTCATCGCCAAGGTGGCCGA
CCCCGCGGCCGACGGGCCCATGGACGGGCTCAACCACACCCGCCGCGACGACCACCACGTGTCGC
CGTACCCGGAGTTCTCCATGGCCACCTGGGAGCTCTTGAAGGCGCAGTACCTGCCCGCACAGCTC
CGCCCGTGCTTGGCCCCAATAGTGCTCCACGCGCACCGGCACCACCTCCCCGAGGTGCAGGCGGC
GGTGCAGGCGTGGGCGCGCCAGCACCCGCCGGTGCCGCACGCGTGCCTCCGCACCATGCTCGACG
AGGGGGCGCCGACGCTCGAGGTGGCGCGCGCCATGGTGCGGCGCGACCCGGGGGCCGCTGTCGAC
GTGCACACCATCAACGCGGTGCTCGAGCGGGTGTGGGGCGAGGACCCCGGCGCCGCCGCCGAGTT
GACGGCAGCGGTGTTTGTCCCGGGGCAGATGCACTTCGACGAGGG
Found at i:1492 original size:21 final size:21
Alignment explanation
Indices: 1450--1492 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
1440 GCGCCACCCA
* *
1450 CGACGGGGCGCGCCCGCTGCT
1 CGACGGGGCGCCCCCGCAGCT
* *
1471 CGACGGGGTGCCCCCGGAGCT
1 CGACGGGGCGCCCCCGCAGCT
1492 C
1 C
1493 CAGCAGGCGC
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.07, C:0.42, G:0.42, T:0.09
Consensus pattern (21 bp):
CGACGGGGCGCCCCCGCAGCT
Left flanking sequence: Indices 950 -- 1449
GACGAGGGGGCGCCGACGCTCGAGGTGGCGCGCGCCATGGTGCGGCGCGACCCGGGGGCCGCTGT
CGACGTGCACACCATCAACGCGGTGCTCGAGCGGGTGTGGGGCGAGGACCCCGGCGCCGCCGCCG
AGTTGACGGCAGCGGTGTTTGTCCCGGGGCAGATGCACTTCGACGAGGGGTACCCGCCCCAGCTC
CAGTACACGGCGCTGGAGACCCGCCGGTACCGCGAGCTCGTGGCGCGCGCCCCGGGCCAGTTCCA
GGTGGTGCCCACCGAGAAGACGTTCCGGATGTGGCTCGCCCACTTGGTGGACGACCCGCAGGCGG
AGTACGCCGCGGTGGAGGCGGTGGTGGCGCGGATGGAGCAGTTTGGGCTCGTCCCGTCCACCAAG
ACGTGGCTCGTTCTCTTTGGGCGCTGGCCCGCGCGGTGGGGGCGGGGCGCGTTGACGGAGCTCAC
GCACCTCCTCGTGGCGCTCCACACCCAGTTGTGGGGCGCCACCCA
Right flanking sequence: Indices 1493 -- 1992
CAGCAGGCGCTCGCCCCGCGGTACGCCATCGACCACTTGCCCACGCACCGGGCGGCCCTCGTCAA
GTTGACGGACCCGTTGATGGCGGCGGTGTTTGCCGCGCACATCGAGGCGGCGCCGCGGCACCGCC
AGCGCGAGGTGCACCGCTTGCACCAGGAGATGGAGGAGCGGGTGCGCCGGGCGGCCCCCGGGGCG
AGGGTGTACACCCAGGCGTCGGTGCGGGCACAGGCCCGGGTGGAGGAGATCCAGTGGATCAGGAA
GGGGTACTTGATGAGACTTGTAAATATGGAGGAGGTTATAGAGTAATAGATTAGCATGAAGGAGG
GGAAGGGGGTGAGTGGGGGAGAAAGGGGGGAGAGTGGGTGAGGGAAGAGGAGCGAATGGAGGGGA
AGGAAAGAGGGGAGAAAGTGAGGGAGGAGAGGAGGTGGGGGAGAGATGGGAGAGAGGTGGTGGAG
TGGTGAGAAGGTGGGGTGGTGAGAGGGGTATGAGGAGGTGAGTGT
Found at i:1966 original size:16 final size:16
Alignment explanation
Indices: 1941--1971 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
1931 GGAGAGAGGT
1941 GGTGGAGTGGTGAGAA
1 GGTGGAGTGGTGAGAA
*
1957 GGTGGGGTGGTGAGA
1 GGTGGAGTGGTGAGA
1972 GGGGTATGAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.19, C:0.00, G:0.61, T:0.19
Consensus pattern (16 bp):
GGTGGAGTGGTGAGAA
Left flanking sequence: Indices 1441 -- 1940
CGCCACCCACGACGGGGCGCGCCCGCTGCTCGACGGGGTGCCCCCGGAGCTCCAGCAGGCGCTCG
CCCCGCGGTACGCCATCGACCACTTGCCCACGCACCGGGCGGCCCTCGTCAAGTTGACGGACCCG
TTGATGGCGGCGGTGTTTGCCGCGCACATCGAGGCGGCGCCGCGGCACCGCCAGCGCGAGGTGCA
CCGCTTGCACCAGGAGATGGAGGAGCGGGTGCGCCGGGCGGCCCCCGGGGCGAGGGTGTACACCC
AGGCGTCGGTGCGGGCACAGGCCCGGGTGGAGGAGATCCAGTGGATCAGGAAGGGGTACTTGATG
AGACTTGTAAATATGGAGGAGGTTATAGAGTAATAGATTAGCATGAAGGAGGGGAAGGGGGTGAG
TGGGGGAGAAAGGGGGGAGAGTGGGTGAGGGAAGAGGAGCGAATGGAGGGGAAGGAAAGAGGGGA
GAAAGTGAGGGAGGAGAGGAGGTGGGGGAGAGATGGGAGAGAGGT
Right flanking sequence: Indices 1972 -- 2471
GGGGTATGAGGAGGTGAGTGTACGAGGTACGGTGTGTCCTGAGAGGTGTGGTGAGGTGCGTAGGT
CCAGTAGGCTGACGTATTTATTCGTTATGTCTACCAGAGGCTCATCTACTTCTACCACCATGGTA
CATCTCTTTAGTTAGCCTTTGAATTGGGGTGAAAGTGAACTGAATTCATTTGTCTTCTAGGGTGC
TACACTTTACGGACCAGGTTTTGACACATTATGCACCACTTCAAGAATACCAATGCCATCACTAC
CCACCTATTGGCTGGCTGAATTTGGCTGAAACAACACCTATAGCATGCTGAGTGCCCTATTAGCC
TCCAGACCAACTTCCATGACTTTCATGTGGCTCTTTCCCCTTCTTCGTGTGGCTTCACCACTCTG
TCTCGCTTCGAGCTAGCCTAACCACAACCACGGGCGCTGCGCCGCAAAAGCCACGCTGAACCGCC
GCCTGTCGCAATGGAGCACTACCGCCACCGAGCTACCCTCAGAAC
Found at i:3004 original size:20 final size:20
Alignment explanation
Indices: 2979--3017 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
2969 GTGTCCTGTT
2979 TCCCCTTCCCCAGCTCTATC
1 TCCCCTTCCCCAGCTCTATC
**
2999 TCCCCTTCTTCAGCTCTAT
1 TCCCCTTCCCCAGCTCTAT
3018 TTCCTTTCCA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.10, C:0.49, G:0.05, T:0.36
Consensus pattern (20 bp):
TCCCCTTCCCCAGCTCTATC
Left flanking sequence: Indices 2479 -- 2978
TTTTGCCGAGTCCCTGAGTTTTCTCCTACCCTGAGGTCGTCTCTGGTACTGGTAGTGCATGTAAT
CCAATCTCTTTGTGGTTAGGCAACTGGTGCTCCTACCTGGACAAACAAAGCCTAAACCGCTTTGG
AGCGCTGGAAAGACCAACCTGCTGCTGCTAGAACGCTGAAAAAAATTTGGGAAATATGGAGACCC
AGGAGAACCTCTGTTGAATTTGCAAACGATCACGTGACTAAACATCACATGATACTAACAAATGG
ATACTAGCCACCACCGCCAGCCACCACCGGCCATCAAACAAACAAAAAAAAGTCCTACTAGTACC
CTGGGGCTTACTACACACCTACCAGTAGGCTTGGGGTACCCCCCCAGCCCCACAGCTTCGAATAT
ATCACATTAAACATTAGTATACCTCCAAAGGAGTAGTATGTACTGTACCACTGTAACACAGCCAG
AGAAGGCCTCGGTTTTTCACGGCTTCTCTTCCTCTGTGTCCTGTT
Right flanking sequence: Indices 3018 -- 3517
TTCCTTTCCAGCTCTCTTCTCCAGCTCTCTTCTCCTACTTAGGCCCGGGCTCGCCCACGGTAGTA
TCCACCGACTGCGGGTTGGGCGACTCAGGCACCGCCTCCGGGTCTTCCTCAACCGCCCGCTCCCC
GTGGACCCTCGCCTCGTCCTCGCGCTCGCGCTGGCGAGCCTCGGGGCTCTCCAAGTTGAACCGGA
ACCAGTCTGCCCGGGGAGTCTGCATAATCAGCTCCCAGAACACAAGGAACCCGGTCATCAACGTC
ACCATGCCCATCAAGAGCGTCACATCCATCTCGGCAAACGTAATCATAATCACCGCCACCCCAAC
GGGCACTCGCCAGCCGATCCGGGCCCACCGGGGCACGAAAAAGTGGCACCGCTCGTCGAGGTCCT
CAAACAACATCCCAATCACCCACATGCAGATCAAACTAACACCAACACCACCAGTAAAGTAGAAG
GCAAGCCCGTACATGTTGTGGGCCTCGTGCTCACCCTCGGCCGCA
Found at i:3042 original size:13 final size:13
Alignment explanation
Indices: 3024--3052 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
3014 CTATTTCCTT
3024 TCCAGCTCTCTTC
1 TCCAGCTCTCTTC
3037 TCCAGCTCTCTTC
1 TCCAGCTCTCTTC
3050 TCC
1 TCC
3053 TACTTAGGCC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.07, C:0.48, G:0.07, T:0.38
Consensus pattern (13 bp):
TCCAGCTCTCTTC
Left flanking sequence: Indices 2524 -- 3023
GTACTGGTAGTGCATGTAATCCAATCTCTTTGTGGTTAGGCAACTGGTGCTCCTACCTGGACAAA
CAAAGCCTAAACCGCTTTGGAGCGCTGGAAAGACCAACCTGCTGCTGCTAGAACGCTGAAAAAAA
TTTGGGAAATATGGAGACCCAGGAGAACCTCTGTTGAATTTGCAAACGATCACGTGACTAAACAT
CACATGATACTAACAAATGGATACTAGCCACCACCGCCAGCCACCACCGGCCATCAAACAAACAA
AAAAAAGTCCTACTAGTACCCTGGGGCTTACTACACACCTACCAGTAGGCTTGGGGTACCCCCCC
AGCCCCACAGCTTCGAATATATCACATTAAACATTAGTATACCTCCAAAGGAGTAGTATGTACTG
TACCACTGTAACACAGCCAGAGAAGGCCTCGGTTTTTCACGGCTTCTCTTCCTCTGTGTCCTGTT
TCCCCTTCCCCAGCTCTATCTCCCCTTCTTCAGCTCTATTTCCTT
Right flanking sequence: Indices 3053 -- 3552
TACTTAGGCCCGGGCTCGCCCACGGTAGTATCCACCGACTGCGGGTTGGGCGACTCAGGCACCGC
CTCCGGGTCTTCCTCAACCGCCCGCTCCCCGTGGACCCTCGCCTCGTCCTCGCGCTCGCGCTGGC
GAGCCTCGGGGCTCTCCAAGTTGAACCGGAACCAGTCTGCCCGGGGAGTCTGCATAATCAGCTCC
CAGAACACAAGGAACCCGGTCATCAACGTCACCATGCCCATCAAGAGCGTCACATCCATCTCGGC
AAACGTAATCATAATCACCGCCACCCCAACGGGCACTCGCCAGCCGATCCGGGCCCACCGGGGCA
CGAAAAAGTGGCACCGCTCGTCGAGGTCCTCAAACAACATCCCAATCACCCACATGCAGATCAAA
CTAACACCAACACCACCAGTAAAGTAGAAGGCAAGCCCGTACATGTTGTGGGCCTCGTGCTCACC
CTCGGCCGCACCCTCGGCCGCACCCTCGGCAGCGCGCACTCCGAG
Found at i:3519 original size:12 final size:12
Alignment explanation
Indices: 3504--3537 Score: 68
Period size: 12 Copynumber: 2.8 Consensus size: 12
3494 GCCTCGTGCT
3504 CACCCTCGGCCG
1 CACCCTCGGCCG
3516 CACCCTCGGCCG
1 CACCCTCGGCCG
3528 CACCCTCGGC
1 CACCCTCGGC
3538 AGCGCGCACT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.09, C:0.59, G:0.24, T:0.09
Consensus pattern (12 bp):
CACCCTCGGCCG
Left flanking sequence: Indices 3004 -- 3503
TTCTTCAGCTCTATTTCCTTTCCAGCTCTCTTCTCCAGCTCTCTTCTCCTACTTAGGCCCGGGCT
CGCCCACGGTAGTATCCACCGACTGCGGGTTGGGCGACTCAGGCACCGCCTCCGGGTCTTCCTCA
ACCGCCCGCTCCCCGTGGACCCTCGCCTCGTCCTCGCGCTCGCGCTGGCGAGCCTCGGGGCTCTC
CAAGTTGAACCGGAACCAGTCTGCCCGGGGAGTCTGCATAATCAGCTCCCAGAACACAAGGAACC
CGGTCATCAACGTCACCATGCCCATCAAGAGCGTCACATCCATCTCGGCAAACGTAATCATAATC
ACCGCCACCCCAACGGGCACTCGCCAGCCGATCCGGGCCCACCGGGGCACGAAAAAGTGGCACCG
CTCGTCGAGGTCCTCAAACAACATCCCAATCACCCACATGCAGATCAAACTAACACCAACACCAC
CAGTAAAGTAGAAGGCAAGCCCGTACATGTTGTGGGCCTCGTGCT
Right flanking sequence: Indices 3538 -- 4037
AGCGCGCACTCCGAGCTCGACAAACCACTGGAGTGCGCGGGCAGCGTGGCCCCCGGAAGTCGCGC
TTTCTCCCGAAAGTTCCCCGGAAGTCCCGTAGCCCGTGGCCCCCTTCTTGGTGGACCCGTTGGAC
ACCGCCACAAGATCGCCAGCGGCATCAGCAGCAAGCACAATGGCGGGGATGAGCGGGAGATGGGC
GTAGATCCACGCCACTGCGGTGACCGCCAGCCGCCGGAGCGGGTGGGTCTTGACCTTACAGGTAC
TACCAAATTGGTAGACCCAAAAGAGGTTGTAGGCAATAGCCAACATAAAGACACCACGGGCGAAG
TTGGCAGAGAGCCCGGGGCCAAGGGGAGCCTCCGCAACCACCTTGTACAAGAACTCGCCAATAGC
AATCGTGACAAACGTCGAGAACCGCTCCACCTCGTGCTCGATGTTGAGAGCCGTCAGCATAGTGA
GCCCCAACATCTTCTTGATCAACGGAGAGTAGCAAAAGCAGAACG
Found at i:6702 original size:9 final size:9
Alignment explanation
Indices: 6688--6758 Score: 81
Period size: 9 Copynumber: 7.9 Consensus size: 9
6678 CGTTGTGTGA
6688 GCATTGATG
1 GCATTGATG
*
6697 GCATTGGTG
1 GCATTGATG
6706 GCATTGATG
1 GCATTGATG
*
6715 GCTTTGA-G
1 GCATTGATG
* *
6723 TGTAATGATG
1 -GCATTGATG
*
6733 GCATTGATA
1 GCATTGATG
6742 GCATTGATG
1 GCATTGATG
6751 GCATTGAT
1 GCATTGAT
6759 AGTGGCATAG
Statistics
Matches: 50, Mismatches: 10, Indels: 4
0.78 0.16 0.06
Matches are distributed among these distances:
8 1 0.02
9 48 0.96
10 1 0.02
ACGTcount: A:0.23, C:0.10, G:0.32, T:0.35
Consensus pattern (9 bp):
GCATTGATG
Left flanking sequence: Indices 6188 -- 6687
GGCGGGGCGTGGCACGTCGAGGGCACCGCCAACGAGCACATCGTGGCCACCATCCTCTACTACTA
CGACCTGGCGAACATCACCGACTCCCAGCTCATGTTCCGCGAGGCCTACGAGGACCCCCCGTACG
AGCAGAACGACGGGACCTTCTGCGAGAAGGTGTACGGCTTGGAGGACGGCCAGCTGACGCAAAAG
ACCCTTGGAGGGGTGCCTACGACCGAGAACCGGGTGTTGGTGTTCCCCAACATGATGCAGCACAA
GGTGGATGCGTTCGAGTTGTTGGACCCCACCAAGCCCGGCCACCGCAAGATCGTGGCCATGTTCG
TCGTGGACCCGTACGACGAGGGGGTGGTGGCCACCGACCGCGTGGAGCCCCAGCAGCTGAAGTTC
ACGAGAGAGCAGGCCGAGGCCTGGCGCACGGAGCTCATGGCCGAGCGGCTGCAGCGGGTCACTCC
TGGCGACTTCGACAACGTGTACGAGCGGGAGTTCTCGTTGTGTGA
Right flanking sequence: Indices 6759 -- 7258
AGTGGCATAGTGACATTGGTAGTGAACACTAGTAGTGAGTAGAGCTTGGACCCAGTGGGGCCCAC
GTAGGCCAGCTAAGTATAGTCGAACCAGTAAGAGAGAAATAGCAAGCGTTCAGTCTGTCTAGTAC
TACTGGGGGGCCGCAGGCGGCGCCCCCCAGACCCCCCAACGCTTATAGCGTGGTGAACCTGGCAA
ATCGATAAGGGCCTGTTGGATTATGGTATGACAGCACGCTAGTATTTCACCATTAGCGTAGATCA
GCAGGAATGGCTGCTGGGCGATCACGAGCTCGTGTGTGGTACTCGCCTGTTAACTATACCCGCTT
GTTACTACTGCTGGCTCCCATATACCTGATGTTGCAACTAACCAAATACGGTAGCCATCTAATTA
GGAGGTAGTCACAAGAATGTAAACCTAACCGGATTACGCAACCTACAATTCTGTTCCACTATTTA
GAATAGAGCTTTTCGACTATAGGGATCTCCACCGAATTCTATAAC
Found at i:8267 original size:12 final size:12
Alignment explanation
Indices: 8250--8303 Score: 72
Period size: 12 Copynumber: 4.5 Consensus size: 12
8240 CTCTCAGTAG
* *
8250 AGCCCAGCTCAC
1 AGCCCAGCCCAT
8262 AGCCCAGCCCAT
1 AGCCCAGCCCAT
8274 AGCCCAGCCCAT
1 AGCCCAGCCCAT
* *
8286 AGCCCAGCTCTT
1 AGCCCAGCCCAT
8298 AGCCCA
1 AGCCCA
8304 ATTCCCCACT
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
12 38 1.00
ACGTcount: A:0.24, C:0.48, G:0.17, T:0.11
Consensus pattern (12 bp):
AGCCCAGCCCAT
Left flanking sequence: Indices 7750 -- 8249
GTGACCACAGGGCTCTGAATGGTCACCAGAAGACCAAAGAATGAGTGTACACCCAGTGCTTGCTC
TAACTGTACATCAGTAGACCACAAAATGCGTATACACTCAGCTTTAACTCCAGCTGTTTACGATG
TTACGTCCTCCTTTCGAAAGGTTACATTGTGAGCTCGTCTCTCTAGCTCATCGCATCTCATCTCA
TCTCATTCATCTTTTTTGTTAGTGTCCTTCAGAGTGAAAATTCTCGACATAGTTTATTAAGACAG
GGATAACTGTTTAATTTGAATGGTTTTCTCATCATTGTACTTACCAGTAGGCACCCGCCAGGCTC
GGTCTTTCTTAGCCATCGCACTGAAAAATTTGCTACTTAAACCGCGGGCTGTATACAGGAACTCG
ACGGGTAGCCCTAGAGAGCGAGTTACCCGCAAACGGCGGAAAGTAGGGCGAAAGGAAGGGTTGAA
GAAGAATAGTTGGGACGAGGGTGAGAAGACGGTTCCTCTCAGTAG
Right flanking sequence: Indices 8304 -- 8803
ATTCCCCACTCCCTTTCGAGTCTCCTGGTTGGTGTCCCAATCGGGAAGGAGCCACCAACCAACCC
GTAGACACCACCCCAGCCCTTGACGCACCCCAACCCGTAGACACCACCCCAGGCGCACCCAGCGC
CTGCTCGCAAGTTTCTCGACTCCGAGGCTTGGCCGAGGCGCTGGCTTAGACGCGGCTTCTGCGCC
TCTACAGGCAAGCAACTGTCCGTCGCGTGAGAGTTGCTAACTACGAGCCAGCCAGCACGCAACCA
AGAACCACCATCCCAATGGTCCAACCCACCCCGTTGACCATTTCCCTTACATTTCCCGTACCATT
TTCCGTACTCCTCTCTCCACCTCGTATTCACGGCTGGCTTTGTGTCTGTGGCTACGTAATGGCAC
AGCCTCGCGCTACGCGTCAGATGTAGCGATCCGCCCGGAGAAGGAATTTCAGGGGCCAGGGGAAC
GTCAGGGGGGCACGGAGCAGCCTCCAGGCGCGGTGGCGGGCAATT
Found at i:8418 original size:19 final size:19
Alignment explanation
Indices: 8362--8419 Score: 75
Period size: 19 Copynumber: 3.2 Consensus size: 19
8352 GAGCCACCAA
8362 CCAACCCGTAGACACCACC
1 CCAACCCGTAGACACCACC
* * *
8381 CCAGCCC-TTGAC-GCACC
1 CCAACCCGTAGACACCACC
8398 CCAACCCGTAGACACCACC
1 CCAACCCGTAGACACCACC
8417 CCA
1 CCA
8420 GGCGCACCCA
Statistics
Matches: 31, Mismatches: 6, Indels: 4
0.76 0.15 0.10
Matches are distributed among these distances:
17 10 0.32
18 8 0.26
19 13 0.42
ACGTcount: A:0.28, C:0.53, G:0.12, T:0.07
Consensus pattern (19 bp):
CCAACCCGTAGACACCACC
Left flanking sequence: Indices 7862 -- 8361
CTCCAGCTGTTTACGATGTTACGTCCTCCTTTCGAAAGGTTACATTGTGAGCTCGTCTCTCTAGC
TCATCGCATCTCATCTCATCTCATTCATCTTTTTTGTTAGTGTCCTTCAGAGTGAAAATTCTCGA
CATAGTTTATTAAGACAGGGATAACTGTTTAATTTGAATGGTTTTCTCATCATTGTACTTACCAG
TAGGCACCCGCCAGGCTCGGTCTTTCTTAGCCATCGCACTGAAAAATTTGCTACTTAAACCGCGG
GCTGTATACAGGAACTCGACGGGTAGCCCTAGAGAGCGAGTTACCCGCAAACGGCGGAAAGTAGG
GCGAAAGGAAGGGTTGAAGAAGAATAGTTGGGACGAGGGTGAGAAGACGGTTCCTCTCAGTAGAG
CCCAGCTCACAGCCCAGCCCATAGCCCAGCCCATAGCCCAGCTCTTAGCCCAATTCCCCACTCCC
TTTCGAGTCTCCTGGTTGGTGTCCCAATCGGGAAGGAGCCACCAA
Right flanking sequence: Indices 8420 -- 8919
GGCGCACCCAGCGCCTGCTCGCAAGTTTCTCGACTCCGAGGCTTGGCCGAGGCGCTGGCTTAGAC
GCGGCTTCTGCGCCTCTACAGGCAAGCAACTGTCCGTCGCGTGAGAGTTGCTAACTACGAGCCAG
CCAGCACGCAACCAAGAACCACCATCCCAATGGTCCAACCCACCCCGTTGACCATTTCCCTTACA
TTTCCCGTACCATTTTCCGTACTCCTCTCTCCACCTCGTATTCACGGCTGGCTTTGTGTCTGTGG
CTACGTAATGGCACAGCCTCGCGCTACGCGTCAGATGTAGCGATCCGCCCGGAGAAGGAATTTCA
GGGGCCAGGGGAACGTCAGGGGGGCACGGAGCAGCCTCCAGGCGCGGTGGCGGGCAATTGAGCAG
CAGGGGATGTTGTTGAGACCCCCACAAAACCATTGGGTGGTCACGCGACGCAGTCCCGCGTTCGT
GGCCTCGTCTACGCTTTTGTCGTCTCTCGCGAGCTGACCACTACA
Found at i:8428 original size:30 final size:32
Alignment explanation
Indices: 8362--8428 Score: 84
Period size: 36 Copynumber: 2.0 Consensus size: 32
8352 GAGCCACCAA
8362 CCAACCCGTAGACACCACCCCAGCCCTTGACGCACC
1 CCAACCCGTAGACACCACCCCAG--C--GACGCACC
8398 CCAACCCGTAGACACCACCCCAG-G-CGCACC
1 CCAACCCGTAGACACCACCCCAGCGACGCACC
8428 C
1 C
8429 AGCGCCTGCT
Statistics
Matches: 31, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
30 7 0.23
31 1 0.03
36 23 0.74
ACGTcount: A:0.25, C:0.54, G:0.15, T:0.06
Consensus pattern (32 bp):
CCAACCCGTAGACACCACCCCAGCGACGCACC
Left flanking sequence: Indices 7862 -- 8361
CTCCAGCTGTTTACGATGTTACGTCCTCCTTTCGAAAGGTTACATTGTGAGCTCGTCTCTCTAGC
TCATCGCATCTCATCTCATCTCATTCATCTTTTTTGTTAGTGTCCTTCAGAGTGAAAATTCTCGA
CATAGTTTATTAAGACAGGGATAACTGTTTAATTTGAATGGTTTTCTCATCATTGTACTTACCAG
TAGGCACCCGCCAGGCTCGGTCTTTCTTAGCCATCGCACTGAAAAATTTGCTACTTAAACCGCGG
GCTGTATACAGGAACTCGACGGGTAGCCCTAGAGAGCGAGTTACCCGCAAACGGCGGAAAGTAGG
GCGAAAGGAAGGGTTGAAGAAGAATAGTTGGGACGAGGGTGAGAAGACGGTTCCTCTCAGTAGAG
CCCAGCTCACAGCCCAGCCCATAGCCCAGCCCATAGCCCAGCTCTTAGCCCAATTCCCCACTCCC
TTTCGAGTCTCCTGGTTGGTGTCCCAATCGGGAAGGAGCCACCAA
Right flanking sequence: Indices 8429 -- 8928
AGCGCCTGCTCGCAAGTTTCTCGACTCCGAGGCTTGGCCGAGGCGCTGGCTTAGACGCGGCTTCT
GCGCCTCTACAGGCAAGCAACTGTCCGTCGCGTGAGAGTTGCTAACTACGAGCCAGCCAGCACGC
AACCAAGAACCACCATCCCAATGGTCCAACCCACCCCGTTGACCATTTCCCTTACATTTCCCGTA
CCATTTTCCGTACTCCTCTCTCCACCTCGTATTCACGGCTGGCTTTGTGTCTGTGGCTACGTAAT
GGCACAGCCTCGCGCTACGCGTCAGATGTAGCGATCCGCCCGGAGAAGGAATTTCAGGGGCCAGG
GGAACGTCAGGGGGGCACGGAGCAGCCTCCAGGCGCGGTGGCGGGCAATTGAGCAGCAGGGGATG
TTGTTGAGACCCCCACAAAACCATTGGGTGGTCACGCGACGCAGTCCCGCGTTCGTGGCCTCGTC
TACGCTTTTGTCGTCTCTCGCGAGCTGACCACTACAACAATAGGC
Found at i:9121 original size:12 final size:12
Alignment explanation
Indices: 9094--9157 Score: 92
Period size: 12 Copynumber: 5.2 Consensus size: 12
9084 TACCACAATA
9094 CGCATCCACGAGCC
1 CGCATCCA--AGCC
*
9108 CGTATCCAAGCC
1 CGCATCCAAGCC
9120 CGCATCCAAGCC
1 CGCATCCAAGCC
9132 CGCATCCAAGCC
1 CGCATCCAAGCC
*
9144 CGCATCCGAGCC
1 CGCATCCAAGCC
9156 CG
1 CG
9158 TACCATCGAA
Statistics
Matches: 47, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
12 40 0.85
14 7 0.15
ACGTcount: A:0.22, C:0.48, G:0.20, T:0.09
Consensus pattern (12 bp):
CGCATCCAAGCC
Left flanking sequence: Indices 8594 -- 9093
CCGTTGACCATTTCCCTTACATTTCCCGTACCATTTTCCGTACTCCTCTCTCCACCTCGTATTCA
CGGCTGGCTTTGTGTCTGTGGCTACGTAATGGCACAGCCTCGCGCTACGCGTCAGATGTAGCGAT
CCGCCCGGAGAAGGAATTTCAGGGGCCAGGGGAACGTCAGGGGGGCACGGAGCAGCCTCCAGGCG
CGGTGGCGGGCAATTGAGCAGCAGGGGATGTTGTTGAGACCCCCACAAAACCATTGGGTGGTCAC
GCGACGCAGTCCCGCGTTCGTGGCCTCGTCTACGCTTTTGTCGTCTCTCGCGAGCTGACCACTAC
AACAATAGGCAAATGAAACAGACGAGGAGAAACGGGAGAGACGGGGAAAAGAACCAATCAGACCA
AACAAAGGGCTAGAACACGACCCAGGACACGACCTAGAACACGAAACACCTGATAACACGTAGAA
AACCCACAACTACCCACTCCCTAGTCACCCGTAATTACCACAATA
Right flanking sequence: Indices 9158 -- 9657
TACCATCGAAGAACACTAACACGCAGTGACACCAGGACGCGTCTAACGGTGCAAACCGTCCCGTC
TATGCAGAGCGATGTTCGCAAAACGCTCTGTGCCCGTCAGCCCTGTCGTGCAAACGATAACAAAA
ATGAAGGACAGGAAGACTGCTAAAAACACAATAACTACGGTAGAAGTGGTAAAAAACAGAGTAAA
ACAACGTAAAAAAACAGGTAACGACAACCTTGAAAACTAGTACACCCCACCCTGTCACCACCCCG
ACCCCACCCATCACTACCTTTCTCTTCCTTTCCCCTTTCTCTTTCTTCCCCTTTCTCGCTCCATC
CCTTCCTTCCATCCTTTTTCGCTCCTTCCCACCTTCTCCTCGTTATTTTTCTGTCCCTGCGCCTG
AAATTCGCGGTTCAGACACTAAAATCGCAAGACTCCCACCTGGCAGCTGAACCACAGACTCGCCA
CTCCCGGGCCATTGACCAGCTACAAACCACCAACAAGCACCACCT
Found at i:9468 original size:16 final size:17
Alignment explanation
Indices: 9434--9474 Score: 66
Period size: 16 Copynumber: 2.5 Consensus size: 17
9424 CCCATCACTA
9434 CCTTTCTCTTCCTTTCC
1 CCTTTCTCTTCCTTTCC
*
9451 CCTTTCTCTTTC-TTCC
1 CCTTTCTCTTCCTTTCC
9467 CCTTTCTC
1 CCTTTCTC
9475 GCTCCATCCC
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
16 12 0.52
17 11 0.48
ACGTcount: A:0.00, C:0.46, G:0.00, T:0.54
Consensus pattern (17 bp):
CCTTTCTCTTCCTTTCC
Left flanking sequence: Indices 8934 -- 9433
AAACAGACGAGGAGAAACGGGAGAGACGGGGAAAAGAACCAATCAGACCAAACAAAGGGCTAGAA
CACGACCCAGGACACGACCTAGAACACGAAACACCTGATAACACGTAGAAAACCCACAACTACCC
ACTCCCTAGTCACCCGTAATTACCACAATACGCATCCACGAGCCCGTATCCAAGCCCGCATCCAA
GCCCGCATCCAAGCCCGCATCCGAGCCCGTACCATCGAAGAACACTAACACGCAGTGACACCAGG
ACGCGTCTAACGGTGCAAACCGTCCCGTCTATGCAGAGCGATGTTCGCAAAACGCTCTGTGCCCG
TCAGCCCTGTCGTGCAAACGATAACAAAAATGAAGGACAGGAAGACTGCTAAAAACACAATAACT
ACGGTAGAAGTGGTAAAAAACAGAGTAAAACAACGTAAAAAAACAGGTAACGACAACCTTGAAAA
CTAGTACACCCCACCCTGTCACCACCCCGACCCCACCCATCACTA
Right flanking sequence: Indices 9475 -- 9974
GCTCCATCCCTTCCTTCCATCCTTTTTCGCTCCTTCCCACCTTCTCCTCGTTATTTTTCTGTCCC
TGCGCCTGAAATTCGCGGTTCAGACACTAAAATCGCAAGACTCCCACCTGGCAGCTGAACCACAG
ACTCGCCACTCCCGGGCCATTGACCAGCTACAAACCACCAACAAGCACCACCTGACCCCTCGCTG
CGTGCCAATTAACCGCCCGACCCGAAAAACCGATGAACATCGACACTCTGGAGGTCGTGGGCGAC
CAGCTGATCAACCCGGACGAGGTGTTGAACCCGCCGCGCCAGGTGACGGTGGAGAAGGAGGAGAA
GATCACCGACTCGCTCCGCCAGTTGCAAGGGCTCGGCCACCACCGTTTGAACGACGACACCGTGC
CCGACATCCAGGGCCGCACCGCTCCCGCGGCCCCTCCCACGGGCTACAACCCCGGTGACCACTCG
GGCACTGCTCCGAACCAGCCTCCGGGGCCCGAGGGGATGACCGAC
Found at i:10193 original size:21 final size:21
Alignment explanation
Indices: 10164--10210 Score: 76
Period size: 21 Copynumber: 2.2 Consensus size: 21
10154 TTCGTCCCAA
* *
10164 CAGCTCTCTCAGTCTCATTCC
1 CAGCCCTCTCAGTCTCAGTCC
10185 CAGCCCTCTCAGTCTCAGTCC
1 CAGCCCTCTCAGTCTCAGTCC
10206 CAGCC
1 CAGCC
10211 GTCGCGCCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.15, C:0.47, G:0.13, T:0.26
Consensus pattern (21 bp):
CAGCCCTCTCAGTCTCAGTCC
Left flanking sequence: Indices 9664 -- 10163
TCGCTGCGTGCCAATTAACCGCCCGACCCGAAAAACCGATGAACATCGACACTCTGGAGGTCGTG
GGCGACCAGCTGATCAACCCGGACGAGGTGTTGAACCCGCCGCGCCAGGTGACGGTGGAGAAGGA
GGAGAAGATCACCGACTCGCTCCGCCAGTTGCAAGGGCTCGGCCACCACCGTTTGAACGACGACA
CCGTGCCCGACATCCAGGGCCGCACCGCTCCCGCGGCCCCTCCCACGGGCTACAACCCCGGTGAC
CACTCGGGCACTGCTCCGAACCAGCCTCCGGGGCCCGAGGGGATGACCGACGAGCAGAAACGCGC
CCTCCACGGGCAGACGGCCCAAAAGGGCGACACCATCAAGACCCCGGGGATGGAGCTGAATGTGT
ACGCCAAGGGCGTGAAGAGAGAGGACAGGGGGCACGGGCAGCGGTACGACGGGCCCGTGCAGCCT
GCGTCGAGGCTGTCGCTGTCCCAGCAGAGGCTGTCTTCGTCCCAA
Right flanking sequence: Indices 10211 -- 10710
GTCGCGCCAGTCCTCGTCCCAGCAGCCCACACTGCTGTCCAAGACGTTGGACCCGCGCACCAAGC
GCACGCTGCCGCCGCAGATGCCCGATCCCACCGTCGAGCTTGGCCAGAACGGCCCCCAGGAGCCC
GTGCGGGTGGCTCTGAGACTGGCCCTGGTGCGGCTGGGCTCCAACGGGACCAGGGTGCCCAGTCT
GCCCGTTCCGCCAGTCCCGCAGTCTCCGATTGTGGGCCAGGCTCCGCAGAGCCCCGTTCCGCTGG
CTCAGGTCCCCCCGGTGCCTGGAAAGGCCGGGTCTCGCAGCTCGCGGGGCCTCGGGTTGAGCTCG
AGCGAGGAGTCTGAGATTGACGGGGGCATCCCGCGAGACAGCCAGGCCGCGGGCGAGCACCTCGG
GTCGAACAACCCGTTCAAGCCCGGGTTGCTGGCGCCGTACCAGGCCCAGTCGCTGGCGTCGGTGG
CGACGCTTAAGGCGGGCGAGGCGGGCGAGGTGAGCCAGGGGAAGG
Found at i:10738 original size:12 final size:12
Alignment explanation
Indices: 10721--10824 Score: 112
Period size: 12 Copynumber: 9.2 Consensus size: 12
10711 GTCAGGCGAG
10721 CCAGGCCCAGAA
1 CCAGGCCCAGAA
10733 CCAGGCCCAGAA
1 CCAGGCCCAGAA
*
10745 CCAGGTCC---A
1 CCAGGCCCAGAA
**
10754 CCAGGGTCAGAA
1 CCAGGCCCAGAA
10766 CCAGGCCCAGAA
1 CCAGGCCCAGAA
10778 CCAGGCCCAGAA
1 CCAGGCCCAGAA
*
10790 CCAGGTCC---A
1 CCAGGCCCAGAA
**
10799 CCAGGGTCAGAA
1 CCAGGCCCAGAA
10811 CCAGGCCCAGAA
1 CCAGGCCCAGAA
10823 CC
1 CC
10825 TGGCTTTGTC
Statistics
Matches: 76, Mismatches: 10, Indels: 12
0.78 0.10 0.12
Matches are distributed among these distances:
9 14 0.18
12 62 0.82
ACGTcount: A:0.31, C:0.39, G:0.26, T:0.04
Consensus pattern (12 bp):
CCAGGCCCAGAA
Left flanking sequence: Indices 10221 -- 10720
TCCTCGTCCCAGCAGCCCACACTGCTGTCCAAGACGTTGGACCCGCGCACCAAGCGCACGCTGCC
GCCGCAGATGCCCGATCCCACCGTCGAGCTTGGCCAGAACGGCCCCCAGGAGCCCGTGCGGGTGG
CTCTGAGACTGGCCCTGGTGCGGCTGGGCTCCAACGGGACCAGGGTGCCCAGTCTGCCCGTTCCG
CCAGTCCCGCAGTCTCCGATTGTGGGCCAGGCTCCGCAGAGCCCCGTTCCGCTGGCTCAGGTCCC
CCCGGTGCCTGGAAAGGCCGGGTCTCGCAGCTCGCGGGGCCTCGGGTTGAGCTCGAGCGAGGAGT
CTGAGATTGACGGGGGCATCCCGCGAGACAGCCAGGCCGCGGGCGAGCACCTCGGGTCGAACAAC
CCGTTCAAGCCCGGGTTGCTGGCGCCGTACCAGGCCCAGTCGCTGGCGTCGGTGGCGACGCTTAA
GGCGGGCGAGGCGGGCGAGGTGAGCCAGGGGAAGGGTCAGGCGAG
Right flanking sequence: Indices 10825 -- 11324
TGGCTTTGTCCCAGTCCCAGGCTCATAACCTGTCTCAGAGCCAGGTTCGTAACCAGCCTCAGTCT
CAGCCTCCCCAGCCCGAGCTTGTCTCGTCGCGCGACGGCGTGTACAACCTCCACGGGAGCTCGCA
CGTCCAGGCGCAGGCTCTCAAGGCTGCGCCTGGCCAGACGGTCACCCCCCAGGGCTACGCGGTGT
CGTCGCCCGTCCAGGACAAGACCCGCGAGACCGTGGCCATCTTGGGCACCCCGGGCGCCGCCCCG
GTGGCCCGCCAGTCGCAGGACGTGTCCGCCGAGCAGCTCCACCGCGAACGCGACCCGGTGAGCGC
TCCGCTGGACAAGCCCGGCCTCACGCTGGCCCCTCCCGCCCCCGTGAGCGCGCCCACGGCCCGTA
GAGAGAAACAAACCGACAAGGAACGGGCCCTTAACGGACAGGGGGCCACTTCGCAGCTGGCCAAT
GGCTCTCAGACCAACTCCCAGGCCAACCAGGCGGTCTCCTCGCAG
Found at i:10770 original size:45 final size:45
Alignment explanation
Indices: 10721--10824 Score: 208
Period size: 45 Copynumber: 2.3 Consensus size: 45
10711 GTCAGGCGAG
10721 CCAGGCCCAGAACCAGGCCCAGAACCAGGTCCACCAGGGTCAGAA
1 CCAGGCCCAGAACCAGGCCCAGAACCAGGTCCACCAGGGTCAGAA
10766 CCAGGCCCAGAACCAGGCCCAGAACCAGGTCCACCAGGGTCAGAA
1 CCAGGCCCAGAACCAGGCCCAGAACCAGGTCCACCAGGGTCAGAA
10811 CCAGGCCCAGAACC
1 CCAGGCCCAGAACC
10825 TGGCTTTGTC
Statistics
Matches: 59, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 59 1.00
ACGTcount: A:0.31, C:0.39, G:0.26, T:0.04
Consensus pattern (45 bp):
CCAGGCCCAGAACCAGGCCCAGAACCAGGTCCACCAGGGTCAGAA
Left flanking sequence: Indices 10221 -- 10720
TCCTCGTCCCAGCAGCCCACACTGCTGTCCAAGACGTTGGACCCGCGCACCAAGCGCACGCTGCC
GCCGCAGATGCCCGATCCCACCGTCGAGCTTGGCCAGAACGGCCCCCAGGAGCCCGTGCGGGTGG
CTCTGAGACTGGCCCTGGTGCGGCTGGGCTCCAACGGGACCAGGGTGCCCAGTCTGCCCGTTCCG
CCAGTCCCGCAGTCTCCGATTGTGGGCCAGGCTCCGCAGAGCCCCGTTCCGCTGGCTCAGGTCCC
CCCGGTGCCTGGAAAGGCCGGGTCTCGCAGCTCGCGGGGCCTCGGGTTGAGCTCGAGCGAGGAGT
CTGAGATTGACGGGGGCATCCCGCGAGACAGCCAGGCCGCGGGCGAGCACCTCGGGTCGAACAAC
CCGTTCAAGCCCGGGTTGCTGGCGCCGTACCAGGCCCAGTCGCTGGCGTCGGTGGCGACGCTTAA
GGCGGGCGAGGCGGGCGAGGTGAGCCAGGGGAAGGGTCAGGCGAG
Right flanking sequence: Indices 10825 -- 11324
TGGCTTTGTCCCAGTCCCAGGCTCATAACCTGTCTCAGAGCCAGGTTCGTAACCAGCCTCAGTCT
CAGCCTCCCCAGCCCGAGCTTGTCTCGTCGCGCGACGGCGTGTACAACCTCCACGGGAGCTCGCA
CGTCCAGGCGCAGGCTCTCAAGGCTGCGCCTGGCCAGACGGTCACCCCCCAGGGCTACGCGGTGT
CGTCGCCCGTCCAGGACAAGACCCGCGAGACCGTGGCCATCTTGGGCACCCCGGGCGCCGCCCCG
GTGGCCCGCCAGTCGCAGGACGTGTCCGCCGAGCAGCTCCACCGCGAACGCGACCCGGTGAGCGC
TCCGCTGGACAAGCCCGGCCTCACGCTGGCCCCTCCCGCCCCCGTGAGCGCGCCCACGGCCCGTA
GAGAGAAACAAACCGACAAGGAACGGGCCCTTAACGGACAGGGGGCCACTTCGCAGCTGGCCAAT
GGCTCTCAGACCAACTCCCAGGCCAACCAGGCGGTCTCCTCGCAG
Found at i:10802 original size:33 final size:35
Alignment explanation
Indices: 10731--10824 Score: 108
Period size: 33 Copynumber: 2.8 Consensus size: 35
10721 CCAGGCCCAG
*
10731 AACCAGGCCCAGAACCAGGTCC---ACCAGGGTCA
1 AACCAGGCCCAGAACCAGGCCCAGAACCAGGGTCA
10763 GAACCAGGCCCAGAACCAGGCCCAGAACCA-GGTC-
1 -AACCAGGCCCAGAACCAGGCCCAGAACCAGGGTCA
* **
10797 CACCAGGGTCAGAACCAGGCCCAGAACC
1 AACCAGGCCCAGAACCAGGCCCAGAACC
10825 TGGCTTTGTC
Statistics
Matches: 54, Mismatches: 4, Indels: 6
0.84 0.06 0.09
Matches are distributed among these distances:
33 46 0.85
35 4 0.07
36 4 0.07
ACGTcount: A:0.32, C:0.38, G:0.26, T:0.04
Consensus pattern (35 bp):
AACCAGGCCCAGAACCAGGCCCAGAACCAGGGTCA
Left flanking sequence: Indices 10231 -- 10730
AGCAGCCCACACTGCTGTCCAAGACGTTGGACCCGCGCACCAAGCGCACGCTGCCGCCGCAGATG
CCCGATCCCACCGTCGAGCTTGGCCAGAACGGCCCCCAGGAGCCCGTGCGGGTGGCTCTGAGACT
GGCCCTGGTGCGGCTGGGCTCCAACGGGACCAGGGTGCCCAGTCTGCCCGTTCCGCCAGTCCCGC
AGTCTCCGATTGTGGGCCAGGCTCCGCAGAGCCCCGTTCCGCTGGCTCAGGTCCCCCCGGTGCCT
GGAAAGGCCGGGTCTCGCAGCTCGCGGGGCCTCGGGTTGAGCTCGAGCGAGGAGTCTGAGATTGA
CGGGGGCATCCCGCGAGACAGCCAGGCCGCGGGCGAGCACCTCGGGTCGAACAACCCGTTCAAGC
CCGGGTTGCTGGCGCCGTACCAGGCCCAGTCGCTGGCGTCGGTGGCGACGCTTAAGGCGGGCGAG
GCGGGCGAGGTGAGCCAGGGGAAGGGTCAGGCGAGCCAGGCCCAG
Right flanking sequence: Indices 10825 -- 11324
TGGCTTTGTCCCAGTCCCAGGCTCATAACCTGTCTCAGAGCCAGGTTCGTAACCAGCCTCAGTCT
CAGCCTCCCCAGCCCGAGCTTGTCTCGTCGCGCGACGGCGTGTACAACCTCCACGGGAGCTCGCA
CGTCCAGGCGCAGGCTCTCAAGGCTGCGCCTGGCCAGACGGTCACCCCCCAGGGCTACGCGGTGT
CGTCGCCCGTCCAGGACAAGACCCGCGAGACCGTGGCCATCTTGGGCACCCCGGGCGCCGCCCCG
GTGGCCCGCCAGTCGCAGGACGTGTCCGCCGAGCAGCTCCACCGCGAACGCGACCCGGTGAGCGC
TCCGCTGGACAAGCCCGGCCTCACGCTGGCCCCTCCCGCCCCCGTGAGCGCGCCCACGGCCCGTA
GAGAGAAACAAACCGACAAGGAACGGGCCCTTAACGGACAGGGGGCCACTTCGCAGCTGGCCAAT
GGCTCTCAGACCAACTCCCAGGCCAACCAGGCGGTCTCCTCGCAG
Found at i:13670 original size:15 final size:15
Alignment explanation
Indices: 13650--13691 Score: 75
Period size: 15 Copynumber: 2.8 Consensus size: 15
13640 CATCGAGGAC
*
13650 GAGAAGGAGGAGAAG
1 GAGAAGGAGAAGAAG
13665 GAGAAGGAGAAGAAG
1 GAGAAGGAGAAGAAG
13680 GAGAAGGAGAAG
1 GAGAAGGAGAAG
13692 CTCCAGCAGC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
15 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (15 bp):
GAGAAGGAGAAGAAG
Left flanking sequence: Indices 13150 -- 13649
AGGTCCGCGTCGAGTTGCAGTGGAAGCCGGTGGAGCTCGACATTGGCACGCCGGTGGTGTACACG
CCGCCGATTGGCGCCGTCCGGGTGTCGATCGAGAAGGCCGAGGACCTCCGCAACTTGGAGACCAT
CGGCAAGGTGGACCCCTACTGCCGGTTGATGGTCAACGGGGTGGTCAAGGGCCGCACCCGCGCGT
TCAACGGGCGGCTCAACCCCACGTGGAACGAGGTGCACTACATCACGGTGCTGCTGGCCAACCAG
AAGCTCACGATGGAGGTGATGGACGTCGAGCGCCACCTGCCCGACCGCACGCTCGGGCTGTTCGA
CGTGCGGCTCAACGAGATCATCCAGCGCGACGAGCGCGGGCAGTACATCGAGCACCAGGACCAGA
CGAAGCGGGTGCTGAAGTTGATCCACAAAAAGGGCGTCAAGGGCCTGGTGACGTACCTGTTGCTG
TTCTTCCCGTGCTTGCCGGTGATGACCACCCAGGACATCGAGGAC
Right flanking sequence: Indices 13692 -- 14191
CTCCAGCAGCTCCAGAGCCGCGCCGACGAGCTCGAGAAGAAGATGGAGCTGCACCACCGCGGGCC
GCGCCACCACCAGGCCAAGGTCGAGCTCCAGAAGGTGCACAAGCAGATGGAGGGCCGCAAGGACG
ACCTGGACTTGGAGGTGGACGGCGGCGACGACGGCTCCACCAAGCTCCGCATGCTGTTGGAGGAG
CTCTGCGAGTTCAAGCTGGGGGTGTTTGTGTTTGACGTCGAGGAGTCGTCGCTCCAGAAGGACGA
CTGCTACGTGCAGATGTTCTTTGGCAACCTGGGCCACCCGGACTTTGTGTCGCAGAAGTTGAAGC
GCAAGGGCAAGCAGAAGATTTGTAGTACTGCCGACACGGTGTTGACGGACTTGGAGTGGGCCCAG
GTCAACATCCGCGTTGCCAGCAAGAAGGACAACAACCGGGCGGAGAAGGCCATCTGCGAGGGCAA
CTTCCCCGCGCTCCAGCTCCTCAAGAACGCCTACCACGAGCCCGA
Found at i:15287 original size:21 final size:21
Alignment explanation
Indices: 15244--15308 Score: 94
Period size: 21 Copynumber: 3.0 Consensus size: 21
15234 TCAATCATAT
15244 GGTTTCAGATTTTATCACCCGTG
1 GGTTTCAGA-TTTATC-CCCGTG
*
15267 GTTTTCAGATTTATCCCCGTG
1 GGTTTCAGATTTATCCCCGTG
*
15288 GGTTTCAGAATTATCCCCGTG
1 GGTTTCAGATTTATCCCCGTG
15309 TCCATGGCTT
Statistics
Matches: 39, Mismatches: 3, Indels: 2
0.89 0.07 0.05
Matches are distributed among these distances:
21 25 0.64
22 6 0.15
23 8 0.21
ACGTcount: A:0.17, C:0.23, G:0.22, T:0.38
Consensus pattern (21 bp):
GGTTTCAGATTTATCCCCGTG
Left flanking sequence: Indices 14744 -- 15243
CAAGGGCGGAGCCACCGTGGTCAAGGGCGTGGGTAAGGGTGTTGGCAAGGGTGTCAAGGGTGTTG
GCACCAAGGTGATTGGCGGTGGATTTAAGGGTGTCAAGGGCTTGTTCAAGCACGACAAGGACGAC
GACGCCGCGTAATTTTTATAGTGAATGTTTGATATTACAATTAGTGGCGTGGGAGGCAGGTTGGG
GAGAGAAATGTAGGGGTGGAGTCATTCTGGTGGTGGTAAGATTGGTGAGTAAGGCTGTAAGATTG
GTTAGATGCTTCTAACGGTTTCGTTCTCTTGACTTGTGGATTCAATGTTGATACACAGTTAGAAT
CGGAATATCATACAAAATACGATATTCTTTTACGTAGCTGGTTAGTGGTATGGGAAGAATGCGTT
ATGAGGGTTCCGTTCCGGAGACATACCAAATATTGGTAAAATAACGAAGCTCGAGTGCGAAATGA
GCACGCGATAAATTATCCCTCTAAAGGGGTATAATTCAATCATAT
Right flanking sequence: Indices 15309 -- 15808
TCCATGGCTTACAGCTCGCTTACAGATCCGACATATATACGAGGTGTCAAACTGTCAAGTGTGGC
GCCTGACTCATCAACGCGTTGCCATCGTGCCGGGCGCTTAACCAAAATTTACTTCTACCATGGGC
CGGCGTAAAAGCAAATGCACCAGCTGTCGACGGCTCAAGATCAGTGTAAGTACCCCCTACCACGT
GGGCCGTCCCGACTAACTCCAGTGTGACGGGTGTCTTCCCTGCGAGTACTGTGTGGCCACCGACC
GCCACTGCCAGTACGAGGGGGCGCTCAGTGACGACGAGGTGGCTCTCATCTTGTCAGAAAACCTG
GCTTCGCCGCCTCAGTCGCTATTCCCCCTCCGGTTGATGCGAGGGTTTTCGTCGATCTTCAAGAT
GAACCTCAGCCCGATCCAGTCGAGACTTATCACTTTCTTCGGCGATTGGGGCGTCCACCACTACG
GCGACTCCCGTGACGCTCGCCAAGAGACCATTTGGACCGAGCTCG
Found at i:23236 original size:13 final size:13
Alignment explanation
Indices: 23218--23245 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
23208 CTACGCGGGT
23218 GGGAAGCGGTGTG
1 GGGAAGCGGTGTG
23231 GGGAAGCGGTGTG
1 GGGAAGCGGTGTG
23244 GG
1 GG
23246 ACCAGGGTGG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.14, C:0.07, G:0.64, T:0.14
Consensus pattern (13 bp):
GGGAAGCGGTGTG
Left flanking sequence: Indices 22718 -- 23217
CGAAACCGGTTGGGCTGCGAACCACCCTTGGAGGCCTGTTTGGTGGGGCTGGGACCCTTTTTCTC
GCCAAACAGCTTGGTTCCCGCAGGGAAAAACAGTTTGAGCGGCTCTCGGGGGGCAGCAGAGGCAG
TGTCGGGCTTCATGTGTGTCGCCAGCTTGTGTAGCGCCCGCGCAGAGGCCACCAAAGTTCTCAGA
CGGAGCATCATGGGGTAACAAAGGGTGAAAATTTGGCTCGCATATAGATTATGATAAGCACGTGT
TTGTGCAGGACAGCATGGTGGGACACCGGGGCGATGTGGGCACGGGGAGAGCGGTAGGGACGGTG
GTTTCGGGGGCGTAGACACCGGTGAAAGCGTCTCTCTGGGGATTGAGCTCGGTTTCACTTGTACT
TTTCAAACCCCTGGGGTCGTCACATTTCTTTTTACCGGTTTTTTTTTCCATCCTATGGGCCAGCT
GTGAGTGGCTGGAGGTGGGAGAGACGGGTTTAGGGCTACGCGGGT
Right flanking sequence: Indices 23246 -- 23745
ACCAGGGTGGGTGAGGGGTTCCAGGGGTGGGCGGTTGTCACGCCATTCCACCCGGGTTCCCCCGG
TCGGGTGATTTGGGTTGCTTGATCGGGACACGCAGGGCTCGCAATGCCACGGCTGAAGGAGCAGG
GAGTAGGAGAGGTGGTTGAAGGTCGAAGGGATTAAAATGTGAGAACCAGGTGTGTTTGACGTGTA
GTCGATTGTTTTGCTGTATTTGCGAGAGTAGTAGTAGGCTTCATTGTTTCCAGCCGTTTCCGGCT
TCACTTGTGTCTTCCTTTGCAGAAATCCCGTCAAAAAGAACACCTACACCCAATCGAACGGCCTT
GTGATTGGAGGCAGGTGGCTCTGGGCCACAAATGCGTTTGGGGCCGGTTCCACCACCTGCTTATG
GTCATCAGCTTAATGCAACCCACACGTGACTTGCCCAAGATACCAGGGTGAGAGATAGAGACACC
TTATCCAATCAAATCCGCGTAATCCACCCCAGCAGATGCCTTCAT
Found at i:23246 original size:12 final size:12
Alignment explanation
Indices: 23212--23246 Score: 54
Period size: 13 Copynumber: 2.9 Consensus size: 12
23202 TTAGGGCTAC
23212 GCGG-GTGGGAA
1 GCGGTGTGGGAA
23223 GCGGTGTGGGGAA
1 GCGGTGT-GGGAA
23236 GCGGTGTGGGA
1 GCGGTGTGGGA
23247 CCAGGGTGGG
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
11 4 0.18
12 6 0.27
13 12 0.55
ACGTcount: A:0.14, C:0.09, G:0.63, T:0.14
Consensus pattern (12 bp):
GCGGTGTGGGAA
Left flanking sequence: Indices 22712 -- 23211
TGGTCGCGAAACCGGTTGGGCTGCGAACCACCCTTGGAGGCCTGTTTGGTGGGGCTGGGACCCTT
TTTCTCGCCAAACAGCTTGGTTCCCGCAGGGAAAAACAGTTTGAGCGGCTCTCGGGGGGCAGCAG
AGGCAGTGTCGGGCTTCATGTGTGTCGCCAGCTTGTGTAGCGCCCGCGCAGAGGCCACCAAAGTT
CTCAGACGGAGCATCATGGGGTAACAAAGGGTGAAAATTTGGCTCGCATATAGATTATGATAAGC
ACGTGTTTGTGCAGGACAGCATGGTGGGACACCGGGGCGATGTGGGCACGGGGAGAGCGGTAGGG
ACGGTGGTTTCGGGGGCGTAGACACCGGTGAAAGCGTCTCTCTGGGGATTGAGCTCGGTTTCACT
TGTACTTTTCAAACCCCTGGGGTCGTCACATTTCTTTTTACCGGTTTTTTTTTCCATCCTATGGG
CCAGCTGTGAGTGGCTGGAGGTGGGAGAGACGGGTTTAGGGCTAC
Right flanking sequence: Indices 23247 -- 23746
CCAGGGTGGGTGAGGGGTTCCAGGGGTGGGCGGTTGTCACGCCATTCCACCCGGGTTCCCCCGGT
CGGGTGATTTGGGTTGCTTGATCGGGACACGCAGGGCTCGCAATGCCACGGCTGAAGGAGCAGGG
AGTAGGAGAGGTGGTTGAAGGTCGAAGGGATTAAAATGTGAGAACCAGGTGTGTTTGACGTGTAG
TCGATTGTTTTGCTGTATTTGCGAGAGTAGTAGTAGGCTTCATTGTTTCCAGCCGTTTCCGGCTT
CACTTGTGTCTTCCTTTGCAGAAATCCCGTCAAAAAGAACACCTACACCCAATCGAACGGCCTTG
TGATTGGAGGCAGGTGGCTCTGGGCCACAAATGCGTTTGGGGCCGGTTCCACCACCTGCTTATGG
TCATCAGCTTAATGCAACCCACACGTGACTTGCCCAAGATACCAGGGTGAGAGATAGAGACACCT
TATCCAATCAAATCCGCGTAATCCACCCCAGCAGATGCCTTCATC
Found at i:26608 original size:18 final size:18
Alignment explanation
Indices: 26585--26622 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
26575 CGGTGGTGGT
* *
26585 GGCACCTCTGACGGCGGA
1 GGCACCTCTCACGACGGA
26603 GGCACCTCTCACGACGGA
1 GGCACCTCTCACGACGGA
26621 GG
1 GG
26623 ATGCGGAGGC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.18, C:0.34, G:0.37, T:0.11
Consensus pattern (18 bp):
GGCACCTCTCACGACGGA
Left flanking sequence: Indices 26085 -- 26584
ACCACCACCACCCACTGTCCGTCACTATTCTCTCTCCTACTGGTATCTGCCTGTATTGGATGCTA
TTTACACTACTCCTCCAACGACTCAAACTTGAACTCCCGCCCCAACGCCTTCCCGATCTCGTCCT
CCATCAACTCGGTCAACGTGGTGCCATCGCGCAACGTCGTCCACTTGCCGTTGATCATGTCGTAC
CGCTTGGGGCCCGTGAGCGGCAGCGACAACCAGATCTGTTTGTTGGGCGGCTGTTTGTTGATGAA
GTAGGACCCGTTGGGTGGCAACTCCAACTCTAACACCCCGTGGTTGAGGTCGGCCTCAATGTCTG
GGTGGTCCTCCGAGAGGACTTCGAGCTCGTCGGCTAACGTTTCGAGGTACACGGTGGCGTGGCGG
TCGTACTCGTTCTCCAGGAGCTGGTCGATGCTCAGCTCGTCAATCTCCTCGCCCAGGGTGGTCTT
GATCGAGTACGCCCGGGTGGACATGGTGGTGGACACGGTGGTGGT
Right flanking sequence: Indices 26623 -- 27122
ATGCGGAGGCACCTCGCGACACAACACCTCCCCGGGAGGAAAGCCGTCTCGCGGCAACGAGCCCC
GTGGTGGAAACTCTGGCAGGCATGGAGCACCCTGACGAGGCCGCCAAGCCGGTGTTGCCTGCGAA
ACTCGCCCGGGTGGCGTGGATGGCTCTGGTGGAAGCTCCCCGAATCATGGTGTGGTGCGATCGGA
TAAACGACGATAAACGATCTGGTGCGCGGCAGAAACCGTAGTGGTTGTGGGCTGATCCCGGGGGT
TGGGAGGGCTCGGGGGACGGTGGGCGGTGGCGGAGATGGCTGAACGGCTTTGGTTTTGCCTTGTT
TTCTGCCGGTGGCTCAGGATGACGAGTTATTAGCGTTGCTCTCGGCTCCCACCGGGCTCCGAAGA
GGACGAGGAGGAGGAAGCGAGGAAATGTGCTGGTTGATCTGGCAGGAAGTGCTCCTATCACCACT
GTTGTCTCTATAATCATATCCCATCACATCCCGTCTTACTTCACC
Found at i:27984 original size:10 final size:12
Alignment explanation
Indices: 27928--27986 Score: 82
Period size: 12 Copynumber: 4.9 Consensus size: 12
27918 AGAAAGGATT
*
27928 GAATGTTGTGTG
1 GAATGGTGTGTG
* *
27940 GGATGGTGTTTG
1 GAATGGTGTGTG
*
27952 GGATGGTGTGTG
1 GAATGGTGTGTG
27964 GAATGGTGTGTG
1 GAATGGTGTGTG
27976 GAATGGTGTGT
1 GAATGGTGTGT
27987 TCGATGGTGG
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 42 1.00
ACGTcount: A:0.14, C:0.00, G:0.49, T:0.37
Consensus pattern (12 bp):
GAATGGTGTGTG
Left flanking sequence: Indices 27428 -- 27927
TTTGCTCGTGGTGTTCATTGGCATCGTCCTTTGCGGAGCCATCCTCTACTTGCCCGCGGCCCTGG
GACTCACCCAGGTGCAAAAGAACAAGCGCGACCGCAAGGTGTCCTACAAACAGCCCGACCAAGTG
CCCCAGTACTACGGGCACGATGACCACGATGACCAGCCGGAAACGGTCAAGGACAAGCTCAAACA
CAAATTGCAGGTGAGCAACGACGACATGCCGGTGCGGATTGCCCTCCGTGGCGACCACCAGGGGT
TGCGCAACCGCCACCACGACAAGATCGACACCAACAACGACCCCAACCAGTACGATTACGACATT
GACGAGCTCATTGCGGAGGAAAACGAGCGGGCCACGCGCGACCGCGAACACGAGTTCTACAAGGA
GGAGCTTGGCAAGGACCGCGAAGAGTTGGTGTGAGCGCGGAGAGGAAATGGGACTGGAACACCAG
TGGAGTAGCATAGATAACATTAATAAACTGAGATAAGAAAGGATT
Right flanking sequence: Indices 27987 -- 28486
TCGATGGTGGAGGTCGATGGTGAGGTCGATGGTGAGGTCGATGTTGGAGGTCGAAGGTAATGGAT
TGGAAACCGGTCTAAGGTATCAAACAGAGACGACTGCTTTTGAGTTACCATGATACTGCTCGACT
ACGAAAGGTGGTTGAGACGAATTTGATTAAACCTACGGGAGTTGTCAGGCTATGCACCTTCACAA
AACTCGATTTTGGATTCCTCAATTGGGATACCCACACGCACAAAAGCCCACCTTTCAAATACCAC
CGGTTTCACATTCCCCCTAGTCTATTGTTACGCGTGAACCAAACATAGTTCACTCTAGCCGACGG
TTCCAGTCGGGAATCACTCGTAAACTTTATTCGATGGTTTCAGCCGGGAATGAGCACGATTGAAT
GGTTGCAAAAAATGACATAAATAGAGACTGGTCCCCACACGTTGGGTCCAAGCATGCGGTGGTCT
ACTTATACTGTCTCATCCATCGAGATGTTGCTGGGCGTGTACCTG
Found at i:27993 original size:12 final size:12
Alignment explanation
Indices: 27987--28040 Score: 81
Period size: 12 Copynumber: 4.3 Consensus size: 12
27977 AATGGTGTGT
27987 TCGATGGTGGAGG
1 TCGATGGT-GAGG
28000 TCGATGGTGAGG
1 TCGATGGTGAGG
28012 TCGATGGTGAGG
1 TCGATGGTGAGG
*
28024 TCGATGTTGGAGG
1 TCGATGGT-GAGG
28037 TCGA
1 TCGA
28041 AGGTAATGGA
Statistics
Matches: 39, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
12 23 0.59
13 16 0.41
ACGTcount: A:0.17, C:0.09, G:0.48, T:0.26
Consensus pattern (12 bp):
TCGATGGTGAGG
Left flanking sequence: Indices 27487 -- 27986
CCCTGGGACTCACCCAGGTGCAAAAGAACAAGCGCGACCGCAAGGTGTCCTACAAACAGCCCGAC
CAAGTGCCCCAGTACTACGGGCACGATGACCACGATGACCAGCCGGAAACGGTCAAGGACAAGCT
CAAACACAAATTGCAGGTGAGCAACGACGACATGCCGGTGCGGATTGCCCTCCGTGGCGACCACC
AGGGGTTGCGCAACCGCCACCACGACAAGATCGACACCAACAACGACCCCAACCAGTACGATTAC
GACATTGACGAGCTCATTGCGGAGGAAAACGAGCGGGCCACGCGCGACCGCGAACACGAGTTCTA
CAAGGAGGAGCTTGGCAAGGACCGCGAAGAGTTGGTGTGAGCGCGGAGAGGAAATGGGACTGGAA
CACCAGTGGAGTAGCATAGATAACATTAATAAACTGAGATAAGAAAGGATTGAATGTTGTGTGGG
ATGGTGTTTGGGATGGTGTGTGGAATGGTGTGTGGAATGGTGTGT
Right flanking sequence: Indices 28041 -- 28540
AGGTAATGGATTGGAAACCGGTCTAAGGTATCAAACAGAGACGACTGCTTTTGAGTTACCATGAT
ACTGCTCGACTACGAAAGGTGGTTGAGACGAATTTGATTAAACCTACGGGAGTTGTCAGGCTATG
CACCTTCACAAAACTCGATTTTGGATTCCTCAATTGGGATACCCACACGCACAAAAGCCCACCTT
TCAAATACCACCGGTTTCACATTCCCCCTAGTCTATTGTTACGCGTGAACCAAACATAGTTCACT
CTAGCCGACGGTTCCAGTCGGGAATCACTCGTAAACTTTATTCGATGGTTTCAGCCGGGAATGAG
CACGATTGAATGGTTGCAAAAAATGACATAAATAGAGACTGGTCCCCACACGTTGGGTCCAAGCA
TGCGGTGGTCTACTTATACTGTCTCATCCATCGAGATGTTGCTGGGCGTGTACCTGCTGGGCGAA
ACCTTTCTGGAAAGCACTGAAAACGTCAAAACCGACGATTATGCC
Found at i:27993 original size:24 final size:23
Alignment explanation
Indices: 27941--27995 Score: 65
Period size: 24 Copynumber: 2.3 Consensus size: 23
27931 TGTTGTGTGG
* * *
27941 GATGGTGTTTGGGATGGTGTGTG
1 GATGGTGTGTGGAATGGTGTGTC
27964 GAATGGTGTGTGGAATGGTGTGTTC
1 G-ATGGTGTGTGGAATGGTGTG-TC
27989 GATGGTG
1 GATGGTG
27996 GAGGTCGATG
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
23 1 0.04
24 24 0.89
25 2 0.07
ACGTcount: A:0.13, C:0.02, G:0.49, T:0.36
Consensus pattern (23 bp):
GATGGTGTGTGGAATGGTGTGTC
Left flanking sequence: Indices 27441 -- 27940
TTCATTGGCATCGTCCTTTGCGGAGCCATCCTCTACTTGCCCGCGGCCCTGGGACTCACCCAGGT
GCAAAAGAACAAGCGCGACCGCAAGGTGTCCTACAAACAGCCCGACCAAGTGCCCCAGTACTACG
GGCACGATGACCACGATGACCAGCCGGAAACGGTCAAGGACAAGCTCAAACACAAATTGCAGGTG
AGCAACGACGACATGCCGGTGCGGATTGCCCTCCGTGGCGACCACCAGGGGTTGCGCAACCGCCA
CCACGACAAGATCGACACCAACAACGACCCCAACCAGTACGATTACGACATTGACGAGCTCATTG
CGGAGGAAAACGAGCGGGCCACGCGCGACCGCGAACACGAGTTCTACAAGGAGGAGCTTGGCAAG
GACCGCGAAGAGTTGGTGTGAGCGCGGAGAGGAAATGGGACTGGAACACCAGTGGAGTAGCATAG
ATAACATTAATAAACTGAGATAAGAAAGGATTGAATGTTGTGTGG
Right flanking sequence: Indices 27996 -- 28495
GAGGTCGATGGTGAGGTCGATGGTGAGGTCGATGTTGGAGGTCGAAGGTAATGGATTGGAAACCG
GTCTAAGGTATCAAACAGAGACGACTGCTTTTGAGTTACCATGATACTGCTCGACTACGAAAGGT
GGTTGAGACGAATTTGATTAAACCTACGGGAGTTGTCAGGCTATGCACCTTCACAAAACTCGATT
TTGGATTCCTCAATTGGGATACCCACACGCACAAAAGCCCACCTTTCAAATACCACCGGTTTCAC
ATTCCCCCTAGTCTATTGTTACGCGTGAACCAAACATAGTTCACTCTAGCCGACGGTTCCAGTCG
GGAATCACTCGTAAACTTTATTCGATGGTTTCAGCCGGGAATGAGCACGATTGAATGGTTGCAAA
AAATGACATAAATAGAGACTGGTCCCCACACGTTGGGTCCAAGCATGCGGTGGTCTACTTATACT
GTCTCATCCATCGAGATGTTGCTGGGCGTGTACCTGCTGGGCGAA
Found at i:28015 original size:25 final size:24
Alignment explanation
Indices: 27978--28040 Score: 81
Period size: 25 Copynumber: 2.5 Consensus size: 24
27968 GGTGTGTGGA
* *
27978 ATGGTGTGTTCGATGGTGGAGGTCG
1 ATGGTGAGGTCGATGGT-GAGGTCG
28003 ATGGTGAGGTCGATGGTGAGGTCG
1 ATGGTGAGGTCGATGGTGAGGTCG
*
28027 ATGTTGGAGGTCGA
1 ATGGT-GAGGTCGA
28041 AGGTAATGGA
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
24 11 0.32
25 23 0.68
ACGTcount: A:0.16, C:0.08, G:0.48, T:0.29
Consensus pattern (24 bp):
ATGGTGAGGTCGATGGTGAGGTCG
Left flanking sequence: Indices 27478 -- 27977
TGCCCGCGGCCCTGGGACTCACCCAGGTGCAAAAGAACAAGCGCGACCGCAAGGTGTCCTACAAA
CAGCCCGACCAAGTGCCCCAGTACTACGGGCACGATGACCACGATGACCAGCCGGAAACGGTCAA
GGACAAGCTCAAACACAAATTGCAGGTGAGCAACGACGACATGCCGGTGCGGATTGCCCTCCGTG
GCGACCACCAGGGGTTGCGCAACCGCCACCACGACAAGATCGACACCAACAACGACCCCAACCAG
TACGATTACGACATTGACGAGCTCATTGCGGAGGAAAACGAGCGGGCCACGCGCGACCGCGAACA
CGAGTTCTACAAGGAGGAGCTTGGCAAGGACCGCGAAGAGTTGGTGTGAGCGCGGAGAGGAAATG
GGACTGGAACACCAGTGGAGTAGCATAGATAACATTAATAAACTGAGATAAGAAAGGATTGAATG
TTGTGTGGGATGGTGTTTGGGATGGTGTGTGGAATGGTGTGTGGA
Right flanking sequence: Indices 28041 -- 28540
AGGTAATGGATTGGAAACCGGTCTAAGGTATCAAACAGAGACGACTGCTTTTGAGTTACCATGAT
ACTGCTCGACTACGAAAGGTGGTTGAGACGAATTTGATTAAACCTACGGGAGTTGTCAGGCTATG
CACCTTCACAAAACTCGATTTTGGATTCCTCAATTGGGATACCCACACGCACAAAAGCCCACCTT
TCAAATACCACCGGTTTCACATTCCCCCTAGTCTATTGTTACGCGTGAACCAAACATAGTTCACT
CTAGCCGACGGTTCCAGTCGGGAATCACTCGTAAACTTTATTCGATGGTTTCAGCCGGGAATGAG
CACGATTGAATGGTTGCAAAAAATGACATAAATAGAGACTGGTCCCCACACGTTGGGTCCAAGCA
TGCGGTGGTCTACTTATACTGTCTCATCCATCGAGATGTTGCTGGGCGTGTACCTGCTGGGCGAA
ACCTTTCTGGAAAGCACTGAAAACGTCAAAACCGACGATTATGCC
Found at i:30333 original size:15 final size:15
Alignment explanation
Indices: 30313--30364 Score: 86
Period size: 15 Copynumber: 3.5 Consensus size: 15
30303 TACCGGGCTG
30313 TCCAGACACCATCTC
1 TCCAGACACCATCTC
30328 TCCAGACACCATCTC
1 TCCAGACACCATCTC
* *
30343 TCCAGACGCCACCTC
1 TCCAGACACCATCTC
30358 TCCAGAC
1 TCCAGAC
30365 GCCACACCCA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 35 1.00
ACGTcount: A:0.25, C:0.48, G:0.10, T:0.17
Consensus pattern (15 bp):
TCCAGACACCATCTC
Left flanking sequence: Indices 29813 -- 30312
CAACCGCCGTTTAGCCGAACACAAAGTATAGCTGTAGCAGCCCATACGTCCCTACCAAAGCTTCG
TACTCCTCCCCCCTACACTACCCATAATCTCGCCTGTATTACCTTCGGGCCCGCGCCCGCATCTA
CGTATTAATCGGTATTCGGGTCAATGTACCCCACCTTGTCCACCTTCGCTAGCTTCACCGCCAGC
AGCATCGGCAACCGGTACTTCAAGTTGCCGCGGAGAATCAAGTCGAACGGGTGTTTGATGATCGA
CTCCCATTTGTCGGTGTTGTCCGGGTCCTCGGGCAGCTCGTCCGCGAGCGCTCCGGTGACGTTCT
TGCCTGGGGTCACGAGCTTGATCTCGCCGCGCTGGACGTCGCGGTGGCGGTTGAAGAAGCCGCCC
GCAAACGTGATGGGCGCCTCGAGCTTGTACACCTGGCCCAAGAGCACGGTTTCCACCAGGGCCGC
GTGCGGCTCGCCAGGCTGACGAAGCTCCACACGCATACCGGGCTG
Right flanking sequence: Indices 30365 -- 30864
GCCACACCCATCCCAGACTCTCCAGACACTCCATTCTCTACAACCATCCCATTCTTTTCCTCCCC
ATTCTTTGAAATGTACCCCAGCTTCGCAAACACCAGGAGCTCGACGTCGTCGATGTCAATCGAAA
ACCACCCGGGATTCACCGCCGCCACCGCCACCGTAAAGAAGAGCTCGTCCAGCGCCACCACCGCG
TGCTCGATCAGGGTGATCGCCACGTCGTCAAGGTCCTTGGTGGTGGCCAAAATGAACCCAAGCAC
GAAACCCACCGTCATGATGCAGAAAACCAGCACCAACGTGTAGATAAACAGCTTGAGACAGTACA
CGCGCCCGCGGTGGAACTCGCCCAGCTTCACCCGGTACAAGTCGTGCGGGCTCAGCAACGGGTGC
CGCCGCAGCAGCGCAAAGCTCGCCTGTTTGTGGAGCTCCTTGGGCACTGCGCGCTCCTCGTCGTC
GAGTGCGTCGTGGAAGTCGTAGCCCACGCGTGGCAGGCCCGGCTG
Found at i:32032 original size:18 final size:18
Alignment explanation
Indices: 32009--32052 Score: 88
Period size: 18 Copynumber: 2.4 Consensus size: 18
31999 GGGCGCGTCC
32009 TTGTCCTTCATGAAGTCT
1 TTGTCCTTCATGAAGTCT
32027 TTGTCCTTCATGAAGTCT
1 TTGTCCTTCATGAAGTCT
32045 TTGTCCTT
1 TTGTCCTT
32053 TTTTGGGTCT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 26 1.00
ACGTcount: A:0.14, C:0.23, G:0.16, T:0.48
Consensus pattern (18 bp):
TTGTCCTTCATGAAGTCT
Left flanking sequence: Indices 31509 -- 32008
CCTGCGCCCCAAACCCCAAGTCCGGCTCGGGCGGGTCGATCAGCGGCAGGTACCCCAGCGCTGCC
ACCAGCTGGGTGTCGGGCTGGTTGGTTTCGTAGACAAACGTCTCGTCGGAGTCGCTCAGGTCGCA
CCCGTCGACGGCCAGCGCGAGTTTGGCGGCGAAGAAGTCGGTTTTCGTCAGCGTCTGCTTCAGGA
TGCGCTTGGTGCGCTTCTTGCGCTCGCGGGGCGTCTCCTCGGGTGGTTCTGCGGCTTCTTCGGGC
GCCTGGCTTTCCGAGTCCAGCACCGCGGCCGCGGGCTTTGGCGTCATTGCCAGCGGGCCCAGCGG
CATCGCGTTGGCCATGGGGTTGGCAATCGGGTTTGCCAACGGGCTGGCCAAGCCCTGGCCGGTTT
TGATCACCTTTTGCTTGGCCTTGAGGGTTTTGTTCAAGTTCAGGAGCGCTTCCTTGTTGATGACG
GTGGGCGGCGGCTGAGCCTGCGGCGGCTGCGGGGTGGGCGCGTCC
Right flanking sequence: Indices 32053 -- 32552
TTTTGGGTCTTTTTCCTTTTTGGGCTCCTTGAGCTCCAGAATCGCCTCTTTCACCTCCTTGAACG
CCTGGTCCTTGAGCTCCAGCGGGCTCTTGACGGGCTCCTTGGCGTCCTTGGTGAGTTCCTTGAGG
TTGGGTAGCTTTTTTTGCGGTTTCGGGGGCTTGGACGACTCGCGCGACGGTTTGGGCTCCTTGCG
CGCGGGATCGCGCGGTTTGCGGGCGTCCTTGGCGGTGGTGTCCCTGGACGGGTCTCTGCTGAGGT
CCCTGGCCTCTTTCGACGGGTCCCTGGCCTCTTTTGGCGGGTCGCGGAAGAGGTCCTTGATCTCC
TTCGAGACGTCGCGGGCGGGCTCCCGGGGGTCTTTGGCGTCTCTGGCGGGGTCTCTGGCAGGGTC
TTTGGGACCAGCAGTGTCCTTTGAGCCCGTTTCCTTGTCCCTGGGCCCGTCCCTGGGCTCCCTGG
CCCCGTCCCTGGGCTCCTTCCCCTCGCGCGCCTCGTCGTCCCCCT
Found at i:32336 original size:21 final size:21
Alignment explanation
Indices: 32310--32355 Score: 74
Period size: 21 Copynumber: 2.2 Consensus size: 21
32300 TCTCTGCTGA
32310 GGTCCCTGGCCTCTTTCGACG
1 GGTCCCTGGCCTCTTTCGACG
* *
32331 GGTCCCTGGCCTCTTTTGGCG
1 GGTCCCTGGCCTCTTTCGACG
32352 GGTC
1 GGTC
32356 GCGGAAGAGG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.02, C:0.35, G:0.33, T:0.30
Consensus pattern (21 bp):
GGTCCCTGGCCTCTTTCGACG
Left flanking sequence: Indices 31810 -- 32309
CGTCATTGCCAGCGGGCCCAGCGGCATCGCGTTGGCCATGGGGTTGGCAATCGGGTTTGCCAACG
GGCTGGCCAAGCCCTGGCCGGTTTTGATCACCTTTTGCTTGGCCTTGAGGGTTTTGTTCAAGTTC
AGGAGCGCTTCCTTGTTGATGACGGTGGGCGGCGGCTGAGCCTGCGGCGGCTGCGGGGTGGGCGC
GTCCTTGTCCTTCATGAAGTCTTTGTCCTTCATGAAGTCTTTGTCCTTTTTTGGGTCTTTTTCCT
TTTTGGGCTCCTTGAGCTCCAGAATCGCCTCTTTCACCTCCTTGAACGCCTGGTCCTTGAGCTCC
AGCGGGCTCTTGACGGGCTCCTTGGCGTCCTTGGTGAGTTCCTTGAGGTTGGGTAGCTTTTTTTG
CGGTTTCGGGGGCTTGGACGACTCGCGCGACGGTTTGGGCTCCTTGCGCGCGGGATCGCGCGGTT
TGCGGGCGTCCTTGGCGGTGGTGTCCCTGGACGGGTCTCTGCTGA
Right flanking sequence: Indices 32356 -- 32855
GCGGAAGAGGTCCTTGATCTCCTTCGAGACGTCGCGGGCGGGCTCCCGGGGGTCTTTGGCGTCTC
TGGCGGGGTCTCTGGCAGGGTCTTTGGGACCAGCAGTGTCCTTTGAGCCCGTTTCCTTGTCCCTG
GGCCCGTCCCTGGGCTCCCTGGCCCCGTCCCTGGGCTCCTTCCCCTCGCGCGCCTCGTCGTCCCC
CTCGCGCGCCTTGGGCCTCGTCTTGGCGTCCCGGCGCTTCTTGTCGTCCCGCCGGTCGCCCCCCT
CGCCCCTCGTGCTGTCCTTGTCCCGCTCTGCCGTCTCCTTCGCCGGGTCGTCTCTCGCGTCCCTC
AGCGTCCCCTCGGCGGGCGATAGCAGTGCCAGCGGCACCGCAGCGTCCCAGCGCAGCTCACTGGC
GTCAGACATGGTGGCAGTGCTGTCTATCAGTGCTCAATCCAGGTCCTATCTCGGGTGGTGGCTCC
GACCGGTGTTGTCTCGGGTTTTTCTGACGAGAGATAGCGAGGCGC
Found at i:32496 original size:12 final size:12
Alignment explanation
Indices: 32479--32521 Score: 56
Period size: 12 Copynumber: 3.8 Consensus size: 12
32469 CCGTTTCCTT
32479 GTCCCTGGGCCC
1 GTCCCTGGGCCC
32491 GTCCCTGGG--C
1 GTCCCTGGGCCC
*
32501 -TCCCTGGCCCC
1 GTCCCTGGGCCC
32512 GTCCCTGGGC
1 GTCCCTGGGC
32522 TCCTTCCCCT
Statistics
Matches: 26, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
9 7 0.27
10 1 0.04
11 1 0.04
12 17 0.65
ACGTcount: A:0.00, C:0.49, G:0.33, T:0.19
Consensus pattern (12 bp):
GTCCCTGGGCCC
Left flanking sequence: Indices 31979 -- 32478
GCCTGCGGCGGCTGCGGGGTGGGCGCGTCCTTGTCCTTCATGAAGTCTTTGTCCTTCATGAAGTC
TTTGTCCTTTTTTGGGTCTTTTTCCTTTTTGGGCTCCTTGAGCTCCAGAATCGCCTCTTTCACCT
CCTTGAACGCCTGGTCCTTGAGCTCCAGCGGGCTCTTGACGGGCTCCTTGGCGTCCTTGGTGAGT
TCCTTGAGGTTGGGTAGCTTTTTTTGCGGTTTCGGGGGCTTGGACGACTCGCGCGACGGTTTGGG
CTCCTTGCGCGCGGGATCGCGCGGTTTGCGGGCGTCCTTGGCGGTGGTGTCCCTGGACGGGTCTC
TGCTGAGGTCCCTGGCCTCTTTCGACGGGTCCCTGGCCTCTTTTGGCGGGTCGCGGAAGAGGTCC
TTGATCTCCTTCGAGACGTCGCGGGCGGGCTCCCGGGGGTCTTTGGCGTCTCTGGCGGGGTCTCT
GGCAGGGTCTTTGGGACCAGCAGTGTCCTTTGAGCCCGTTTCCTT
Right flanking sequence: Indices 32522 -- 33021
TCCTTCCCCTCGCGCGCCTCGTCGTCCCCCTCGCGCGCCTTGGGCCTCGTCTTGGCGTCCCGGCG
CTTCTTGTCGTCCCGCCGGTCGCCCCCCTCGCCCCTCGTGCTGTCCTTGTCCCGCTCTGCCGTCT
CCTTCGCCGGGTCGTCTCTCGCGTCCCTCAGCGTCCCCTCGGCGGGCGATAGCAGTGCCAGCGGC
ACCGCAGCGTCCCAGCGCAGCTCACTGGCGTCAGACATGGTGGCAGTGCTGTCTATCAGTGCTCA
ATCCAGGTCCTATCTCGGGTGGTGGCTCCGACCGGTGTTGTCTCGGGTTTTTCTGACGAGAGATA
GCGAGGCGCCTCCTGCGCGCCAAAAAAGGTGGCAACGGTAAGGCACCGCGAAGGGCAGGGGAAGC
GGGCTTGGCGGCCAAGCGAGGGGTGGAAGCGAGACGCCCGAGGGCGGCCGAGACGTTTCTACAGG
GCTACTGGGCGGGGTCGCTGGCAGCGTAGTGTTGGCGTTGGCTTC
Found at i:32506 original size:21 final size:21
Alignment explanation
Indices: 32480--32524 Score: 81
Period size: 21 Copynumber: 2.1 Consensus size: 21
32470 CGTTTCCTTG
*
32480 TCCCTGGGCCCGTCCCTGGGC
1 TCCCTGGCCCCGTCCCTGGGC
32501 TCCCTGGCCCCGTCCCTGGGC
1 TCCCTGGCCCCGTCCCTGGGC
32522 TCC
1 TCC
32525 TTCCCCTCGC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.00, C:0.51, G:0.29, T:0.20
Consensus pattern (21 bp):
TCCCTGGCCCCGTCCCTGGGC
Left flanking sequence: Indices 31980 -- 32479
CCTGCGGCGGCTGCGGGGTGGGCGCGTCCTTGTCCTTCATGAAGTCTTTGTCCTTCATGAAGTCT
TTGTCCTTTTTTGGGTCTTTTTCCTTTTTGGGCTCCTTGAGCTCCAGAATCGCCTCTTTCACCTC
CTTGAACGCCTGGTCCTTGAGCTCCAGCGGGCTCTTGACGGGCTCCTTGGCGTCCTTGGTGAGTT
CCTTGAGGTTGGGTAGCTTTTTTTGCGGTTTCGGGGGCTTGGACGACTCGCGCGACGGTTTGGGC
TCCTTGCGCGCGGGATCGCGCGGTTTGCGGGCGTCCTTGGCGGTGGTGTCCCTGGACGGGTCTCT
GCTGAGGTCCCTGGCCTCTTTCGACGGGTCCCTGGCCTCTTTTGGCGGGTCGCGGAAGAGGTCCT
TGATCTCCTTCGAGACGTCGCGGGCGGGCTCCCGGGGGTCTTTGGCGTCTCTGGCGGGGTCTCTG
GCAGGGTCTTTGGGACCAGCAGTGTCCTTTGAGCCCGTTTCCTTG
Right flanking sequence: Indices 32525 -- 33024
TTCCCCTCGCGCGCCTCGTCGTCCCCCTCGCGCGCCTTGGGCCTCGTCTTGGCGTCCCGGCGCTT
CTTGTCGTCCCGCCGGTCGCCCCCCTCGCCCCTCGTGCTGTCCTTGTCCCGCTCTGCCGTCTCCT
TCGCCGGGTCGTCTCTCGCGTCCCTCAGCGTCCCCTCGGCGGGCGATAGCAGTGCCAGCGGCACC
GCAGCGTCCCAGCGCAGCTCACTGGCGTCAGACATGGTGGCAGTGCTGTCTATCAGTGCTCAATC
CAGGTCCTATCTCGGGTGGTGGCTCCGACCGGTGTTGTCTCGGGTTTTTCTGACGAGAGATAGCG
AGGCGCCTCCTGCGCGCCAAAAAAGGTGGCAACGGTAAGGCACCGCGAAGGGCAGGGGAAGCGGG
CTTGGCGGCCAAGCGAGGGGTGGAAGCGAGACGCCCGAGGGCGGCCGAGACGTTTCTACAGGGCT
ACTGGGCGGGGTCGCTGGCAGCGTAGTGTTGGCGTTGGCTTCGTG
Found at i:33523 original size:11 final size:11
Alignment explanation
Indices: 33503--33535 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
33493 TCACCCCAAG
*
33503 CGCCCACCACA
1 CGCCCGCCACA
33514 CGCCCGCCACA
1 CGCCCGCCACA
33525 CGCCCGCCACA
1 CGCCCGCCACA
33536 GATAAGCGTG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.21, C:0.64, G:0.15, T:0.00
Consensus pattern (11 bp):
CGCCCGCCACA
Left flanking sequence: Indices 33003 -- 33502
TAGTGTTGGCGTTGGCTTCGTGACCGTGGTGCATAGGCGGTCCGCGTAGACGTCCCAATCGAGCC
ATGCAGTAAGCATTGCTACGGAGCCCGTGAACAGGGCTTACGCCAGAGGCGGCGTGTAGAGGTCA
CCACCGCGGGTGGGATGACCACAGCGTTTCGGGGCGGTTTGCCGGGCAGACACCACCCCCGTGAC
GCACGTGATGGTTGCAAACAGGGGTCAATGGCCCGTTGGCAGGACTACGGGGCTACGCTAGCGAG
CACGCACCACACAATGGAAGCGACGCGGGCCGTGACACCCATTGATCGCGTCCCCCGCCCACGAC
GCACCGCCCGATGCGCCGTGCTTGTTTATTGCTACCAACGTTGCCCCATGGGGATGGCGACGCTC
ACAACCAACAATGTGGATCAGGGAATGATCTCGGGAGTGTTTAAGAAGAGATGGAGAGCAAGTGG
GAGTAAGCGGGAGTAGCGGTGAGTTTTACTGAATTTCACCCCAAG
Right flanking sequence: Indices 33536 -- 34035
GATAAGCGTGCATCTACGTTCCAGTCCGTGGCGTTCTACCCGGCCGTTCTAGCCCGTGCGTTCTA
GCCCGTGCGAGCCCGCTTATCAAACCTCATCATCTTTTTTAGGCCTGCCTGCATACAGTCCCCAC
ACCACAAAGCCATCGGAACCACCGCCAACGCCATGGGGTTCTCGTTTGGGTTCACGGAGGACGAT
CTCGAGGGCACGGCCCCGGTGGACGCGTCCGCCGAGCTTGCGCTGGCCACCCGGGCGCTAGACAA
TTTTGCCGTAGCCCCCGCCAACGCGCCGCGGGCCCACGAGCTCATCGCGGTGCTCAACCTGTTGG
TGGACACCAAGGTGTCGTTTGAAAAATTCACCACCGAGGGCGGGAACGTCGTGTACCGGCGCGAG
TTGTTTGACGTGCGCCACCAGGTGATGAGCGAGGACGACGCCACCACCGTCACCGAGCTCCTTCT
ACTGCAGGACGGGGACCTCGAAAAGAACGTCTACGAGGGGGGTTT
Found at i:33584 original size:28 final size:28
Alignment explanation
Indices: 33552--33605 Score: 74
Period size: 28 Copynumber: 1.9 Consensus size: 28
33542 CGTGCATCTA
*
33552 CGTTCCAGTCCGTGGCGTTCTA-CCCGGC
1 CGTTCCAGCCCGT-GCGTTCTAGCCCGGC
*
33580 CGTTCTAGCCCGTGCGTTCTAGCCCG
1 CGTTCCAGCCCGTGCGTTCTAGCCCG
33606 TGCGAGCCCG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
27 8 0.35
28 15 0.65
ACGTcount: A:0.07, C:0.39, G:0.28, T:0.26
Consensus pattern (28 bp):
CGTTCCAGCCCGTGCGTTCTAGCCCGGC
Left flanking sequence: Indices 33052 -- 33551
ACGTCCCAATCGAGCCATGCAGTAAGCATTGCTACGGAGCCCGTGAACAGGGCTTACGCCAGAGG
CGGCGTGTAGAGGTCACCACCGCGGGTGGGATGACCACAGCGTTTCGGGGCGGTTTGCCGGGCAG
ACACCACCCCCGTGACGCACGTGATGGTTGCAAACAGGGGTCAATGGCCCGTTGGCAGGACTACG
GGGCTACGCTAGCGAGCACGCACCACACAATGGAAGCGACGCGGGCCGTGACACCCATTGATCGC
GTCCCCCGCCCACGACGCACCGCCCGATGCGCCGTGCTTGTTTATTGCTACCAACGTTGCCCCAT
GGGGATGGCGACGCTCACAACCAACAATGTGGATCAGGGAATGATCTCGGGAGTGTTTAAGAAGA
GATGGAGAGCAAGTGGGAGTAAGCGGGAGTAGCGGTGAGTTTTACTGAATTTCACCCCAAGCGCC
CACCACACGCCCGCCACACGCCCGCCACAGATAAGCGTGCATCTA
Right flanking sequence: Indices 33606 -- 34105
TGCGAGCCCGCTTATCAAACCTCATCATCTTTTTTAGGCCTGCCTGCATACAGTCCCCACACCAC
AAAGCCATCGGAACCACCGCCAACGCCATGGGGTTCTCGTTTGGGTTCACGGAGGACGATCTCGA
GGGCACGGCCCCGGTGGACGCGTCCGCCGAGCTTGCGCTGGCCACCCGGGCGCTAGACAATTTTG
CCGTAGCCCCCGCCAACGCGCCGCGGGCCCACGAGCTCATCGCGGTGCTCAACCTGTTGGTGGAC
ACCAAGGTGTCGTTTGAAAAATTCACCACCGAGGGCGGGAACGTCGTGTACCGGCGCGAGTTGTT
TGACGTGCGCCACCAGGTGATGAGCGAGGACGACGCCACCACCGTCACCGAGCTCCTTCTACTGC
AGGACGGGGACCTCGAAAAGAACGTCTACGAGGGGGGTTTCAAGCTGTGGGAGTGCTCGTACGAC
GTGATCGACTACTTGGCCCGCGGCGTGCACTGGGACACCGTGTGC
Found at i:33597 original size:14 final size:14
Alignment explanation
Indices: 33561--33609 Score: 66
Period size: 14 Copynumber: 3.5 Consensus size: 14
33551 ACGTTCCAGT
33561 CCGTGGCGTTCTA-C
1 CCGT-GCGTTCTAGC
33575 CCG-GCCGTTCTAGC
1 CCGTG-CGTTCTAGC
33589 CCGTGCGTTCTAGC
1 CCGTGCGTTCTAGC
33603 CCGTGCG
1 CCGTGCG
33610 AGCCCGCTTA
Statistics
Matches: 32, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
12 1 0.03
13 7 0.22
14 23 0.72
15 1 0.03
ACGTcount: A:0.06, C:0.39, G:0.31, T:0.24
Consensus pattern (14 bp):
CCGTGCGTTCTAGC
Left flanking sequence: Indices 33061 -- 33560
TCGAGCCATGCAGTAAGCATTGCTACGGAGCCCGTGAACAGGGCTTACGCCAGAGGCGGCGTGTA
GAGGTCACCACCGCGGGTGGGATGACCACAGCGTTTCGGGGCGGTTTGCCGGGCAGACACCACCC
CCGTGACGCACGTGATGGTTGCAAACAGGGGTCAATGGCCCGTTGGCAGGACTACGGGGCTACGC
TAGCGAGCACGCACCACACAATGGAAGCGACGCGGGCCGTGACACCCATTGATCGCGTCCCCCGC
CCACGACGCACCGCCCGATGCGCCGTGCTTGTTTATTGCTACCAACGTTGCCCCATGGGGATGGC
GACGCTCACAACCAACAATGTGGATCAGGGAATGATCTCGGGAGTGTTTAAGAAGAGATGGAGAG
CAAGTGGGAGTAAGCGGGAGTAGCGGTGAGTTTTACTGAATTTCACCCCAAGCGCCCACCACACG
CCCGCCACACGCCCGCCACAGATAAGCGTGCATCTACGTTCCAGT
Right flanking sequence: Indices 33610 -- 34109
AGCCCGCTTATCAAACCTCATCATCTTTTTTAGGCCTGCCTGCATACAGTCCCCACACCACAAAG
CCATCGGAACCACCGCCAACGCCATGGGGTTCTCGTTTGGGTTCACGGAGGACGATCTCGAGGGC
ACGGCCCCGGTGGACGCGTCCGCCGAGCTTGCGCTGGCCACCCGGGCGCTAGACAATTTTGCCGT
AGCCCCCGCCAACGCGCCGCGGGCCCACGAGCTCATCGCGGTGCTCAACCTGTTGGTGGACACCA
AGGTGTCGTTTGAAAAATTCACCACCGAGGGCGGGAACGTCGTGTACCGGCGCGAGTTGTTTGAC
GTGCGCCACCAGGTGATGAGCGAGGACGACGCCACCACCGTCACCGAGCTCCTTCTACTGCAGGA
CGGGGACCTCGAAAAGAACGTCTACGAGGGGGGTTTCAAGCTGTGGGAGTGCTCGTACGACGTGA
TCGACTACTTGGCCCGCGGCGTGCACTGGGACACCGTGTGCGACC
Found at i:36415 original size:13 final size:13
Alignment explanation
Indices: 36397--36440 Score: 79
Period size: 13 Copynumber: 3.4 Consensus size: 13
36387 AGTGTTGGGT
36397 GTTTGGGATGGTG
1 GTTTGGGATGGTG
36410 GTTTGGGATGGTG
1 GTTTGGGATGGTG
*
36423 GTTTGGGACGGTG
1 GTTTGGGATGGTG
36436 GTTTG
1 GTTTG
36441 AGGCGATGTA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
13 30 1.00
ACGTcount: A:0.07, C:0.02, G:0.52, T:0.39
Consensus pattern (13 bp):
GTTTGGGATGGTG
Left flanking sequence: Indices 35897 -- 36396
GCCATCGTAGCGAAGTGATTGGTACATCGAAGTTAGTGCGAAAAGTAGTGATTGGTGCCATTGAG
GTTCGAGGGGAAAGTATTGTTTCGAGCCATCGAAGGCCCTCGCGTATCCAGCTTAGACCAGCATT
AGTTTGTGTCAGACCGTTATGCGGACGGGGGACGTGCCGTTAGACCGTTGGAGGTGTGGAATGTT
GGATGTCTCCGGACTATATACCACGGTGGTTCCACGGTTGTGTGCAACCCGACCCGCGGTCAGCA
TTCCGCCGGGCTACGAGCATACGATACCCAACAGATGGGCGACGAGCAACCGAAAAGGCCGGTAG
CATGGTAGGGAGAGAGACGGGTGGTTACGGTGGGGATGGTTTCTTGTTTAGTTAAGTTGTCTAGT
GATGATTCAGCCGTACGATGGCTTAGGTGGTGCGTAACGGTTAGGCCTCGACCGGAGTCACGCAG
GGGCAAGCGTAGAGGCTCATATAGGGTTTGTGTAGAGTGTTGGGT
Right flanking sequence: Indices 36441 -- 36940
AGGCGATGTAGGATGGGCGGATGTCACAGAATGCGACGTGGTGCAAAGCCAAAGGCCAACGTGGG
ATCAGCGGAGGCTGTGGAGATCAGCAGAGGTTGGGGCGATCACCAACCACAAAAACAAGTGTCGA
TCAAAATCTATCTAAGTACCATTTGGTTTGCAAGCTGAACAAACGTGAAAAACACATAAATTGTG
ATAAATCAACCACACCAAACCATTGTCAAAGATAACAGTCCTGATTTGCAGCCACTAATCACAGC
AGCTAATCACAGTCACTAACCATAAACCCTAATCACAGCCAAACCTTTGTCAAAGATAACAGCCT
TGATTTGTAGCCACTAATCACTGCCACAAACAGCCACTGATCACACCCTACAACCAAAAACACCC
AGAACCCCTACAACACAACCCATCACACCCACCACCTACCACACCCAACACCTCTACAATCACAC
CAAACAAATCAAACCGACTTTTCCCCACCACTCTCCAAACCATCT
Found at i:36546 original size:19 final size:19
Alignment explanation
Indices: 36505--36547 Score: 50
Period size: 19 Copynumber: 2.3 Consensus size: 19
36495 GCCAACGTGG
* *
36505 GATCAGCGGAGGCTGTGGA
1 GATCAGCAGAGGCTGGGGA
* *
36524 GATCAGCAGAGGTTGGGGC
1 GATCAGCAGAGGCTGGGGA
36543 GATCA
1 GATCA
36548 CCAACCACAA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.23, C:0.16, G:0.44, T:0.16
Consensus pattern (19 bp):
GATCAGCAGAGGCTGGGGA
Left flanking sequence: Indices 36005 -- 36504
GTATCCAGCTTAGACCAGCATTAGTTTGTGTCAGACCGTTATGCGGACGGGGGACGTGCCGTTAG
ACCGTTGGAGGTGTGGAATGTTGGATGTCTCCGGACTATATACCACGGTGGTTCCACGGTTGTGT
GCAACCCGACCCGCGGTCAGCATTCCGCCGGGCTACGAGCATACGATACCCAACAGATGGGCGAC
GAGCAACCGAAAAGGCCGGTAGCATGGTAGGGAGAGAGACGGGTGGTTACGGTGGGGATGGTTTC
TTGTTTAGTTAAGTTGTCTAGTGATGATTCAGCCGTACGATGGCTTAGGTGGTGCGTAACGGTTA
GGCCTCGACCGGAGTCACGCAGGGGCAAGCGTAGAGGCTCATATAGGGTTTGTGTAGAGTGTTGG
GTGTTTGGGATGGTGGTTTGGGATGGTGGTTTGGGACGGTGGTTTGAGGCGATGTAGGATGGGCG
GATGTCACAGAATGCGACGTGGTGCAAAGCCAAAGGCCAACGTGG
Right flanking sequence: Indices 36548 -- 37047
CCAACCACAAAAACAAGTGTCGATCAAAATCTATCTAAGTACCATTTGGTTTGCAAGCTGAACAA
ACGTGAAAAACACATAAATTGTGATAAATCAACCACACCAAACCATTGTCAAAGATAACAGTCCT
GATTTGCAGCCACTAATCACAGCAGCTAATCACAGTCACTAACCATAAACCCTAATCACAGCCAA
ACCTTTGTCAAAGATAACAGCCTTGATTTGTAGCCACTAATCACTGCCACAAACAGCCACTGATC
ACACCCTACAACCAAAAACACCCAGAACCCCTACAACACAACCCATCACACCCACCACCTACCAC
ACCCAACACCTCTACAATCACACCAAACAAATCAAACCGACTTTTCCCCACCACTCTCCAAACCA
TCTCTATTTCTATTTCTCTATCTTCTCGTACAACTCCATGTTGAGCGCCGCCAAAAACAACGGCA
CCTCGTGGTGCTCGTCCGCCCACTGCTTCATCACCCGCGCACACA
Found at i:39260 original size:19 final size:19
Alignment explanation
Indices: 39217--39269 Score: 72
Period size: 18 Copynumber: 2.8 Consensus size: 19
39207 CTCATCCCCA
*
39217 CTTTTAACCACCTTTCCAT
1 CTTTTCACCACCTTTCCAT
*
39236 -TTTTCACCACCTTTCCCT
1 CTTTTCACCACCTTTCCAT
39254 CTTTTCACCACTCTTT
1 CTTTTCACCAC-CTTT
39270 TCACCCGTCC
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
18 16 0.53
19 10 0.33
20 4 0.13
ACGTcount: A:0.15, C:0.40, G:0.00, T:0.45
Consensus pattern (19 bp):
CTTTTCACCACCTTTCCAT
Left flanking sequence: Indices 38717 -- 39216
CAGATGAAAAACGCGACTGGTGATAATGAAGGAAGAAGGAATGAAGGGTGTAGTGGGATGTAGTG
GTGGTGGTGGAGGTGGAGGTAGTGGTAGTCGTGGTGGTAGTGGCGGTGTGTTTACGGGTGGAATG
GGTTATTTTGTTTTTGATGAGTTTGGTGGGTTGGGTGGGTTGGTTGCATTGGTATGGTGTTTGTA
GGTGGACGCGACTGGAGGTGAAAAGTTAGTGGGAGAAGGTGGTCTGGGGGGTAAAGATAGGTTAA
AGTAGAAGTTTAGAGCCGGGTGATTATAGTGGAATGACTTCTCTTGTTGTTTCTCCGCCCAATGG
CATAATTGTGGTGACTTCACCGGTCCCCTCATACAATACTCCGTATCCATTGTCCACAGTCACAA
AAAAGAAGGACTCAGTTGACGAAATTGACACCAAGTAGATTTGAGAGCCCTTCAAGTAAATTGTC
GTGTTTCGCCTTCATTTCCACCACCCAACTATCCCCTCATCCCCA
Right flanking sequence: Indices 39270 -- 39769
TCACCCGTCCAACTATAACACACCCACCACCTTACTCCCACCACTTCACACCCACCACCTTACAC
CATCACTCTCAACCTCCACCACTGCATTTAAACCACTTCTAAGAGCCATTCTCTACTCCCTCCTT
TCCCTTCCCCCCTGCTTACTCCACCACTTTGCTCTTGTGCGGCTTACGCGAATCCTTACCACTAG
CAATGAAGGTACGTCCCCCGCCACCAGGCCACACCACGGGGCAGGCACCCAGCCACCGCATTAAT
CCCCACCCCTGGACCGTCCCAAAACCACTTCCCTCACCAAAACCCTACTAACCCCCAGCAACGCA
TCACCGGCCTCGATCTAGCCATCCTCACCCGCGAGATCGAGCCCGAGCTCGCAAACTACCGCCTC
CTGAACATATACAACGTGGCCCTGAACCCAAACCGCCAGTTTGTCCTCAAGTTTGCCATCCCCGA
CCTGAAAAAGCTGTTGGCTCTCGAGTGTGGCCACCGCGTCCACAC
Found at i:39311 original size:14 final size:14
Alignment explanation
Indices: 39289--39335 Score: 69
Period size: 14 Copynumber: 3.4 Consensus size: 14
39279 CAACTATAAC
39289 ACACCCACCACCTT
1 ACACCCACCACCTT
*
39303 ACTCCCACCA-CTT
1 ACACCCACCACCTT
39316 CACACCCACCACCTT
1 -ACACCCACCACCTT
39331 ACACC
1 ACACC
39336 ATCACTCTCA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
13 3 0.10
14 23 0.79
15 3 0.10
ACGTcount: A:0.28, C:0.57, G:0.00, T:0.15
Consensus pattern (14 bp):
ACACCCACCACCTT
Left flanking sequence: Indices 38789 -- 39288
TGGAGGTGGAGGTAGTGGTAGTCGTGGTGGTAGTGGCGGTGTGTTTACGGGTGGAATGGGTTATT
TTGTTTTTGATGAGTTTGGTGGGTTGGGTGGGTTGGTTGCATTGGTATGGTGTTTGTAGGTGGAC
GCGACTGGAGGTGAAAAGTTAGTGGGAGAAGGTGGTCTGGGGGGTAAAGATAGGTTAAAGTAGAA
GTTTAGAGCCGGGTGATTATAGTGGAATGACTTCTCTTGTTGTTTCTCCGCCCAATGGCATAATT
GTGGTGACTTCACCGGTCCCCTCATACAATACTCCGTATCCATTGTCCACAGTCACAAAAAAGAA
GGACTCAGTTGACGAAATTGACACCAAGTAGATTTGAGAGCCCTTCAAGTAAATTGTCGTGTTTC
GCCTTCATTTCCACCACCCAACTATCCCCTCATCCCCACTTTTAACCACCTTTCCATTTTTCACC
ACCTTTCCCTCTTTTCACCACTCTTTTCACCCGTCCAACTATAAC
Right flanking sequence: Indices 39336 -- 39835
ATCACTCTCAACCTCCACCACTGCATTTAAACCACTTCTAAGAGCCATTCTCTACTCCCTCCTTT
CCCTTCCCCCCTGCTTACTCCACCACTTTGCTCTTGTGCGGCTTACGCGAATCCTTACCACTAGC
AATGAAGGTACGTCCCCCGCCACCAGGCCACACCACGGGGCAGGCACCCAGCCACCGCATTAATC
CCCACCCCTGGACCGTCCCAAAACCACTTCCCTCACCAAAACCCTACTAACCCCCAGCAACGCAT
CACCGGCCTCGATCTAGCCATCCTCACCCGCGAGATCGAGCCCGAGCTCGCAAACTACCGCCTCC
TGAACATATACAACGTGGCCCTGAACCCAAACCGCCAGTTTGTCCTCAAGTTTGCCATCCCCGAC
CTGAAAAAGCTGTTGGCTCTCGAGTGTGGCCACCGCGTCCACACCACCCACTTTGACCTCCCCAC
CACCCAGACCCCGTCCAACTTTGTGGCCAAGCTCCGCAAGCACTT
Found at i:40963 original size:6 final size:6
Alignment explanation
Indices: 40952--41006 Score: 62
Period size: 6 Copynumber: 9.2 Consensus size: 6
40942 GCCTGGAGAG
40952 CCTGGA CCTGGA CCTGGA -CTCGGA CCTGGA -CTCGGA CCTGGA -CTCGGA
1 CCTGGA CCTGGA CCTGGA CCT-GGA CCTGGA CCT-GGA CCTGGA CCT-GGA
41000 CCTGGA C
1 CCTGGA C
41007 GACGAGCTCC
Statistics
Matches: 43, Mismatches: 0, Indels: 12
0.78 0.00 0.22
Matches are distributed among these distances:
5 6 0.14
6 31 0.72
7 6 0.14
ACGTcount: A:0.16, C:0.35, G:0.33, T:0.16
Consensus pattern (6 bp):
CCTGGA
Left flanking sequence: Indices 40452 -- 40951
CTCGACGAGTTCCACCCGTTTGAGCCGTTCAAAATGGACACCAACCTCTACAAGATCGAGCCCGT
CGAGGGGTACAATGCCACCGTAGACCGGTTCTTCTCCACCATCGAGTCCTCGAAGAACTTGGTGC
GGATCGAGCGCCAGAAGCTCTCGGCCGCCAACCGGTTGGCGCTGGCCCGCAGCGACCGCGACCGC
CAGATCCAGCTGCTTGTCGAGCAGCAGGAGGCCAACCGCAAGCGCGGAGACGCCATTGTGTTCCA
CGCGGACGCAGTGGCGGCGTGCCTGGCGTTTGTGGGCGACTTGGTGGCCCAGCAGATGGACTGGA
CCAACATCGAGTCGTACTTGCAGCTTGAGCAGCGCAAAAAGAACCCCGTGGCGACGGCGATCCGG
TTGCCGTTGAAGCTTGCGGAGAACAAGATCCAGTTGGAGCTCAGGGACCCTGACGTGGAGGTGGT
GGACAGCGACAGCGCGCTGGAGAGCGAGCTGGAGAGCCTGGAGAG
Right flanking sequence: Indices 41007 -- 41506
GACGAGCTCCGGTTGCCCAAGAAAAAGGCCCAGCGTCCCAAGAAGCCCTCGGGCACGCTCACGGT
GTGGGTGGACATCACGCTCTCGCCGTACGCCAACGCAGCCACCTACTTCGACACGAAGAAGCTGG
CCGAGTCCAAGCAGGTGAAGGTGGAGAAAAACACCGAGATGGCGCTCAAGAACGCCGAGCGCAAG
ATCAACCAGGACCTCAACCGCGCGCTCAAGGAAGAGGAGGCCGGGGGCGGCGGCCAGTTGCGCCA
GTTGCGGCCCAAGTTTTGGTTTGAGAAGTTCTTCTGGTTCGTCACCAGCGACGGGTACTTGTGTT
TGGCGGGCAAGGACCTGCTCCAGCTGGACATGATCTACTTCCGCCACGTGAGCGACAACGACTTT
GTGGTGCTGCTGGACGTGGAGGGGTCGTTGCGGGTGTTCATCAAAAACCCGTTCAAGGGCGAGGA
CGTGCCGCCGTCGACGCTCATGCAAGCGAGCATCTACGCGCTCTC
Found at i:40969 original size:12 final size:12
Alignment explanation
Indices: 40952--41006 Score: 94
Period size: 12 Copynumber: 4.6 Consensus size: 12
40942 GCCTGGAGAG
40952 CCTGGAC-CTGGA
1 CCTGGACTC-GGA
40964 CCTGGACTCGGA
1 CCTGGACTCGGA
40976 CCTGGACTCGGA
1 CCTGGACTCGGA
40988 CCTGGACTCGGA
1 CCTGGACTCGGA
41000 CCTGGAC
1 CCTGGAC
41007 GACGAGCTCC
Statistics
Matches: 42, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
12 41 0.98
13 1 0.02
ACGTcount: A:0.16, C:0.35, G:0.33, T:0.16
Consensus pattern (12 bp):
CCTGGACTCGGA
Left flanking sequence: Indices 40452 -- 40951
CTCGACGAGTTCCACCCGTTTGAGCCGTTCAAAATGGACACCAACCTCTACAAGATCGAGCCCGT
CGAGGGGTACAATGCCACCGTAGACCGGTTCTTCTCCACCATCGAGTCCTCGAAGAACTTGGTGC
GGATCGAGCGCCAGAAGCTCTCGGCCGCCAACCGGTTGGCGCTGGCCCGCAGCGACCGCGACCGC
CAGATCCAGCTGCTTGTCGAGCAGCAGGAGGCCAACCGCAAGCGCGGAGACGCCATTGTGTTCCA
CGCGGACGCAGTGGCGGCGTGCCTGGCGTTTGTGGGCGACTTGGTGGCCCAGCAGATGGACTGGA
CCAACATCGAGTCGTACTTGCAGCTTGAGCAGCGCAAAAAGAACCCCGTGGCGACGGCGATCCGG
TTGCCGTTGAAGCTTGCGGAGAACAAGATCCAGTTGGAGCTCAGGGACCCTGACGTGGAGGTGGT
GGACAGCGACAGCGCGCTGGAGAGCGAGCTGGAGAGCCTGGAGAG
Right flanking sequence: Indices 41007 -- 41506
GACGAGCTCCGGTTGCCCAAGAAAAAGGCCCAGCGTCCCAAGAAGCCCTCGGGCACGCTCACGGT
GTGGGTGGACATCACGCTCTCGCCGTACGCCAACGCAGCCACCTACTTCGACACGAAGAAGCTGG
CCGAGTCCAAGCAGGTGAAGGTGGAGAAAAACACCGAGATGGCGCTCAAGAACGCCGAGCGCAAG
ATCAACCAGGACCTCAACCGCGCGCTCAAGGAAGAGGAGGCCGGGGGCGGCGGCCAGTTGCGCCA
GTTGCGGCCCAAGTTTTGGTTTGAGAAGTTCTTCTGGTTCGTCACCAGCGACGGGTACTTGTGTT
TGGCGGGCAAGGACCTGCTCCAGCTGGACATGATCTACTTCCGCCACGTGAGCGACAACGACTTT
GTGGTGCTGCTGGACGTGGAGGGGTCGTTGCGGGTGTTCATCAAAAACCCGTTCAAGGGCGAGGA
CGTGCCGCCGTCGACGCTCATGCAAGCGAGCATCTACGCGCTCTC
Found at i:53727 original size:21 final size:21
Alignment explanation
Indices: 53703--53756 Score: 58
Period size: 21 Copynumber: 2.6 Consensus size: 21
53693 GGTGTTGTAG
*
53703 GTGGTGT-TTCTAGGTGTGGAC
1 GTGGTGTGTTCT-GGCGTGGAC
*
53724 GTGGTGTGTTCTGGCGTGGCC
1 GTGGTGTGTTCTGGCGTGGAC
*
53745 GTGGCG-GTTCTG
1 GTGGTGTGTTCTG
53757 ATAAGACAGG
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
20 6 0.21
21 19 0.66
22 4 0.14
ACGTcount: A:0.04, C:0.15, G:0.46, T:0.35
Consensus pattern (21 bp):
GTGGTGTGTTCTGGCGTGGAC
Left flanking sequence: Indices 53203 -- 53702
CCCCACCCCCGGCCACGGCCCCGACATCTCCAACCAGTTGGTGTCGGCGGTGGACCTGGTGTTTT
CTGAGCTCAGCTTGAAGCGGGTGAACCAGTGGGCCGCCGACCCGTTGTGCGGTGTTGGCGAGATC
GACCCCACCAAGGTCGAGCACGTGTGGACCGATGCCCAGTTGGCGTTGACCGACTCGGCGTTGAA
CACCAACGTGTTGGACCCTGTGGTGCCTGCCGTGGGGGTTTCCTCGGGCGTGCACGGCGTTTAGC
TACGTTTAGTTATGTTTGTAAGAGAAAACCAAGAATGCGCAGAACTGGTGTAGCTCATCGCGGCG
AATTGTGGGGTGCTTGACAACCAACGGCTGCCATCGACCTGGTAACCGGGTTACGAGCGCGGGAC
AGAACGTACCCAGGTGTGGGGATGGGACGAGCAATTAGAGGTGGGGTAGGCGGGGCAAGGGGCGG
TTTACGAGGGTGGCGTGAGCCGTGTGGGTGTGCGTGGTGTTGTAG
Right flanking sequence: Indices 53757 -- 54256
ATAAGACAGGTTTTGGCCGGGATCTGTTTCCTAGACGGTTTTACGGAGGGTTTCACCACGGCGAA
CAATGGCGACGTGTACGGGAAGCATCACGAACAGCGTTCGAGGCAACAATAGGGCCAGCTTACGA
GTTCCACCTCCCCACAAGCGAGGCACCCCTTCGGATCACGCTAGGTTCAGGGGCACGCGTGACAA
CACCCCCACGCCGTGACGACTCTCCCCACGCCACCCCGTGTTCTACACAGTTCTCTGACACAAAT
AGAGTTTTCACAAATAGTGGTGTCAGCCAACCTTGATGGTATAAGGTGAAATTCTCGGAAAATCT
CCGGAGTGAGGTCCCGATTGCGCTAGGCTGGCGGATTGGCGTGATGGGAGTTTCATTTCAAAGCA
ACAACCACATTGTGTCGAACAAAGCGGCGAGCGGCATTGTGGTTGTTTGCTAGCAAACGGGTCAT
GACCCGCCAAGAGTGGCCCCCTGCCCCTGAAACCTTAAGCTGGCT
Found at i:53968 original size:19 final size:20
Alignment explanation
Indices: 53940--53983 Score: 56
Period size: 19 Copynumber: 2.3 Consensus size: 20
53930 GGTTCAGGGG
53940 CACG-CGTGACAACAC-CCC
1 CACGCCGTGACAACACTCCC
* *
53958 CACGCCGTGACGACTCTCCC
1 CACGCCGTGACAACACTCCC
53978 CACGCC
1 CACGCC
53984 ACCCCGTGTT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
18 4 0.18
19 9 0.41
20 9 0.41
ACGTcount: A:0.20, C:0.52, G:0.18, T:0.09
Consensus pattern (20 bp):
CACGCCGTGACAACACTCCC
Left flanking sequence: Indices 53440 -- 53939
CTCGGGCGTGCACGGCGTTTAGCTACGTTTAGTTATGTTTGTAAGAGAAAACCAAGAATGCGCAG
AACTGGTGTAGCTCATCGCGGCGAATTGTGGGGTGCTTGACAACCAACGGCTGCCATCGACCTGG
TAACCGGGTTACGAGCGCGGGACAGAACGTACCCAGGTGTGGGGATGGGACGAGCAATTAGAGGT
GGGGTAGGCGGGGCAAGGGGCGGTTTACGAGGGTGGCGTGAGCCGTGTGGGTGTGCGTGGTGTTG
TAGGTGGTGTTTCTAGGTGTGGACGTGGTGTGTTCTGGCGTGGCCGTGGCGGTTCTGATAAGACA
GGTTTTGGCCGGGATCTGTTTCCTAGACGGTTTTACGGAGGGTTTCACCACGGCGAACAATGGCG
ACGTGTACGGGAAGCATCACGAACAGCGTTCGAGGCAACAATAGGGCCAGCTTACGAGTTCCACC
TCCCCACAAGCGAGGCACCCCTTCGGATCACGCTAGGTTCAGGGG
Right flanking sequence: Indices 53984 -- 54483
ACCCCGTGTTCTACACAGTTCTCTGACACAAATAGAGTTTTCACAAATAGTGGTGTCAGCCAACC
TTGATGGTATAAGGTGAAATTCTCGGAAAATCTCCGGAGTGAGGTCCCGATTGCGCTAGGCTGGC
GGATTGGCGTGATGGGAGTTTCATTTCAAAGCAACAACCACATTGTGTCGAACAAAGCGGCGAGC
GGCATTGTGGTTGTTTGCTAGCAAACGGGTCATGACCCGCCAAGAGTGGCCCCCTGCCCCTGAAA
CCTTAAGCTGGCTCGGCGTTAGCAAGATAGCGGAGCAGGTTCTCGACGGGGTTTAGCCTATCAGA
GCACACCATCGTTTCATAACCCAGCATCTGACGGTCACCCTTTGCATCCGGTGGTCCTGGCTGCG
GGCTCCCAACGCGGTTAGGTCAATGCCTGGTGAGTGGCTCGTGTAATCGCCTGCATGTGGCCACG
GTAGGGGTAAACACACCGCCTGTATAGAGCTCAGGGACGACTGAC
Found at i:55727 original size:15 final size:15
Alignment explanation
Indices: 55707--55749 Score: 77
Period size: 15 Copynumber: 2.9 Consensus size: 15
55697 TGTCGTACGG
*
55707 CGGAGGCGGTAATCT
1 CGGAGGCGGCAATCT
55722 CGGAGGCGGCAATCT
1 CGGAGGCGGCAATCT
55737 CGGAGGCGGCAAT
1 CGGAGGCGGCAAT
55750 TCAGGCGGAT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
15 27 1.00
ACGTcount: A:0.21, C:0.23, G:0.42, T:0.14
Consensus pattern (15 bp):
CGGAGGCGGCAATCT
Left flanking sequence: Indices 55207 -- 55706
GTGTACCTCAACCGGCTCGTGAACCTGATGGTCCCCCGTGAGTACGGCGAGGCGTACATGGCGCT
GGTGGTGGACGACATCACCGCCGACCTCGCGCGCACCCCCGCGACCAATTTCTACGACCTCAAGT
ACGTCATGGCCCAGGTGAAAACGTGGTTCGTGTCCACGGGCCGCGGGGCTGAGTTCCAGCAGTTC
CAGCAGATGGTGCTGGAGCTCGCACGCCACAAGCCCGAGGAGGAGGTGGCCCGGTGGGTGGTGTT
CCTAACCGCGCTCCGGGCCGACCAGGGCTCCACGAGCGCTCGCGACCGCAGCCCCAGCATGGCCA
CCACCCAGGGGTGGCCCAGTGCCCAGTCCCAGCACCTGTCGCTTTCCAAGCGCGCTGTGCTCAAC
TTTCTCCCCAACCAGGGCAGCCGGCCCGGGCTGACGCGGCCGAAGTCGGTGGTGCGACCACACCT
GCCTTCGCGGCTGCCACAGTCGCTGTTCCGGCCGTTGTCGTACGG
Right flanking sequence: Indices 55750 -- 56249
TCAGGCGGATTTGGCCAGCGCGGCCTGTTTCTGGGCGGGTCCCAGTACGGGTACGGGCCCGGATC
GCACTTCAGCACGCCCCAGTTTGCAACCCAGACCCCGTTCCAGCCGCAGTACGCGCCGTTTGACG
TCGGAAAACCGCCAGCCAAGCTCATCGAGCCCGTGTACCAGCTGCTTCCCGAGGAGCACGTGCTC
ACCTACATCCAGTACACGCTTCTCGGGCTCGACCTGAAGCTCGTCAAGTTCGAGCTGGACATCCA
GGTGCTGGTGCCCGACCACATGAACGCGCTGTACCTGCAGTTGATGGCGCTGGTGCTCGAGTGTG
CGCTCTTGTACAAGCACTTGAGCCTCTACGTGCGCACCCACAAGGGCAAGATGGACTCGCCGATC
AAAACGGCGTTTCTCGCGATGGTGGAGATGCAGTTGAACACCTACGTCACCCACATCAACGGGCT
CTTTGACCAGAGCACACTGCTGCCGCCTCTGACGCTCATTGGCGT
Found at i:55757 original size:12 final size:14
Alignment explanation
Indices: 55709--55757 Score: 57
Period size: 15 Copynumber: 3.5 Consensus size: 14
55699 TCGTACGGCG
*
55709 GAGGCGGTAATCTC
1 GAGGCGGCAATCTC
55723 GGAGGCGGCAATCTC
1 -GAGGCGGCAATCTC
55738 GGAGGCGGCAAT-TC
1 -GAGGCGGCAATCTC
55752 -AGGCGG
1 GAGGCGG
55758 ATTTGGCCAG
Statistics
Matches: 33, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
12 6 0.18
14 2 0.06
15 25 0.76
ACGTcount: A:0.20, C:0.22, G:0.43, T:0.14
Consensus pattern (14 bp):
GAGGCGGCAATCTC
Left flanking sequence: Indices 55209 -- 55708
GTACCTCAACCGGCTCGTGAACCTGATGGTCCCCCGTGAGTACGGCGAGGCGTACATGGCGCTGG
TGGTGGACGACATCACCGCCGACCTCGCGCGCACCCCCGCGACCAATTTCTACGACCTCAAGTAC
GTCATGGCCCAGGTGAAAACGTGGTTCGTGTCCACGGGCCGCGGGGCTGAGTTCCAGCAGTTCCA
GCAGATGGTGCTGGAGCTCGCACGCCACAAGCCCGAGGAGGAGGTGGCCCGGTGGGTGGTGTTCC
TAACCGCGCTCCGGGCCGACCAGGGCTCCACGAGCGCTCGCGACCGCAGCCCCAGCATGGCCACC
ACCCAGGGGTGGCCCAGTGCCCAGTCCCAGCACCTGTCGCTTTCCAAGCGCGCTGTGCTCAACTT
TCTCCCCAACCAGGGCAGCCGGCCCGGGCTGACGCGGCCGAAGTCGGTGGTGCGACCACACCTGC
CTTCGCGGCTGCCACAGTCGCTGTTCCGGCCGTTGTCGTACGGCG
Right flanking sequence: Indices 55758 -- 56257
ATTTGGCCAGCGCGGCCTGTTTCTGGGCGGGTCCCAGTACGGGTACGGGCCCGGATCGCACTTCA
GCACGCCCCAGTTTGCAACCCAGACCCCGTTCCAGCCGCAGTACGCGCCGTTTGACGTCGGAAAA
CCGCCAGCCAAGCTCATCGAGCCCGTGTACCAGCTGCTTCCCGAGGAGCACGTGCTCACCTACAT
CCAGTACACGCTTCTCGGGCTCGACCTGAAGCTCGTCAAGTTCGAGCTGGACATCCAGGTGCTGG
TGCCCGACCACATGAACGCGCTGTACCTGCAGTTGATGGCGCTGGTGCTCGAGTGTGCGCTCTTG
TACAAGCACTTGAGCCTCTACGTGCGCACCCACAAGGGCAAGATGGACTCGCCGATCAAAACGGC
GTTTCTCGCGATGGTGGAGATGCAGTTGAACACCTACGTCACCCACATCAACGGGCTCTTTGACC
AGAGCACACTGCTGCCGCCTCTGACGCTCATTGGCGTGTACAACA
Found at i:67929 original size:3 final size:3
Alignment explanation
Indices: 67921--68014 Score: 70
Period size: 3 Copynumber: 32.7 Consensus size: 3
67911 CAACCTCCAG
* * *
67921 CAA CAA CAA CAA CAA AAA CAA CAA CAA CAA CAC CAA C-A CAC CAA C-A
1 CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA
* * * * * * *
67967 CAC CAA C-A CAC CAA CAC CAA CAC CAA CAC CAA C-A CAC CAA CAC CAA
1 CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA
68013 CA
1 CA
68015 CACCGATAAC
Statistics
Matches: 67, Mismatches: 20, Indels: 8
0.71 0.21 0.08
Matches are distributed among these distances:
2 8 0.12
3 59 0.88
ACGTcount: A:0.56, C:0.44, G:0.00, T:0.00
Consensus pattern (3 bp):
CAA
Left flanking sequence: Indices 67421 -- 67920
GACTATTACCAACTAAATGAGTATTACATAATGAATCTTGTTAGAGAATAGAACGGTCCCCTCAC
CTTAGTCTATACGACGGGACTATACGACGAAGGTTCACTAATATTGGTAGAAAACTTTACGAGCA
TTACATAACCGCTTTACGAGCTGACCTAATGTATTGGTGCGGCTCAAGCAACCCATGTGATATTT
GTCACGTGACTTTACTGTTGATACCGTAGATAGCGTTGATTATGGGGAACCTGTATATATCCTAT
ATATTACAATAAGCCCTCAGTACGGCTTCAGGGTAGCCCGCTCATGCAGGCTATCCCCAAGGCGC
ACCCAGTGCTTAACTAAATAATTATAGAAACCCGGATTGGATACCAATGGCACCACCAACAGGGG
GAAAAAACGGTGCCAATGGCACCCGATCCAACGAATCGAATCGGATACCATTTGCACCACCAACA
GGGGGAAAAGGAGCCATTGGCATCCAACCCTTAAACAACCTCCAG
Right flanking sequence: Indices 68015 -- 68514
CACCGATAACAACACACCAACACCAACACTCCAACACCAACACACCAATAAGAGGGGGTGGTACT
TCTAATACTTCTGATATCGTCTCTCATATGGCAAAGGAAGCGAAGCCCAGAGGCTTGCAACTCCC
CGCGCCGACCACGGGATGGTTCTGTGGCGATACCGCCCATCCTGACGCTAGATTGCACCTCCCAC
CTCCCGGCCCGTCGGCCATCGAGTAGAAGCGTGCAACTGCACATGTCAGGACTGTTCGAGGACCC
GTAGCTGGTGGGTCGCGACGCCACCAGTAACAAGCCCTGTCACCAGACCAACAAACGCTGAGCCA
CTACCATGGCGCGAAGCGCCAACGGATAATGACCCTGCCGAGAGATTCCATCAGAAGTAACAGCA
GCACCGAGGCTGTGGTGAGCAAGTATCACCACGCTAACGACAAGCTTTTGTAGCCTCCTTGAGGG
GATTTTTTTCCCCCATCTTCTTTGATTTCTTCTTTGCTTGTCGCT
Found at i:67963 original size:8 final size:8
Alignment explanation
Indices: 67945--68062 Score: 108
Period size: 8 Copynumber: 15.4 Consensus size: 8
67935 AAAACAACAA
67945 CAACAACAC
1 CAAC-ACAC
67954 CAACACAC
1 CAACACAC
67962 CAACACAC
1 CAACACAC
67970 CAACACAC
1 CAACACAC
*
67978 CAACACCAA
1 CAACA-CAC
*
67987 CACCAACAC
1 CAAC-ACAC
67996 CAACACAC
1 CAACACAC
68004 C-A-ACAC
1 CAACACAC
68010 CAACACAC
1 CAACACAC
* *
68018 CGATA-A-
1 CAACACAC
68024 CAACACAC
1 CAACACAC
68032 C-A-ACAC
1 CAACACAC
*
68038 CAACACTC
1 CAACACAC
68046 C-A-ACAC
1 CAACACAC
68052 CAACACAC
1 CAACACAC
68060 CAA
1 CAA
68063 TAAGAGGGGG
Statistics
Matches: 89, Mismatches: 10, Indels: 21
0.74 0.08 0.17
Matches are distributed among these distances:
6 17 0.19
7 8 0.09
8 49 0.55
9 14 0.16
10 1 0.01
ACGTcount: A:0.50, C:0.47, G:0.01, T:0.02
Consensus pattern (8 bp):
CAACACAC
Left flanking sequence: Indices 67445 -- 67944
TACATAATGAATCTTGTTAGAGAATAGAACGGTCCCCTCACCTTAGTCTATACGACGGGACTATA
CGACGAAGGTTCACTAATATTGGTAGAAAACTTTACGAGCATTACATAACCGCTTTACGAGCTGA
CCTAATGTATTGGTGCGGCTCAAGCAACCCATGTGATATTTGTCACGTGACTTTACTGTTGATAC
CGTAGATAGCGTTGATTATGGGGAACCTGTATATATCCTATATATTACAATAAGCCCTCAGTACG
GCTTCAGGGTAGCCCGCTCATGCAGGCTATCCCCAAGGCGCACCCAGTGCTTAACTAAATAATTA
TAGAAACCCGGATTGGATACCAATGGCACCACCAACAGGGGGAAAAAACGGTGCCAATGGCACCC
GATCCAACGAATCGAATCGGATACCATTTGCACCACCAACAGGGGGAAAAGGAGCCATTGGCATC
CAACCCTTAAACAACCTCCAGCAACAACAACAACAAAAACAACAA
Right flanking sequence: Indices 68063 -- 68562
TAAGAGGGGGTGGTACTTCTAATACTTCTGATATCGTCTCTCATATGGCAAAGGAAGCGAAGCCC
AGAGGCTTGCAACTCCCCGCGCCGACCACGGGATGGTTCTGTGGCGATACCGCCCATCCTGACGC
TAGATTGCACCTCCCACCTCCCGGCCCGTCGGCCATCGAGTAGAAGCGTGCAACTGCACATGTCA
GGACTGTTCGAGGACCCGTAGCTGGTGGGTCGCGACGCCACCAGTAACAAGCCCTGTCACCAGAC
CAACAAACGCTGAGCCACTACCATGGCGCGAAGCGCCAACGGATAATGACCCTGCCGAGAGATTC
CATCAGAAGTAACAGCAGCACCGAGGCTGTGGTGAGCAAGTATCACCACGCTAACGACAAGCTTT
TGTAGCCTCCTTGAGGGGATTTTTTTCCCCCATCTTCTTTGATTTCTTCTTTGCTTGTCGCTGCC
TTCCGTAGTAACGGGAAAAAAGCCGGGCTTGCAGGGTGCAAGCGA
Found at i:67967 original size:14 final size:14
Alignment explanation
Indices: 67948--68062 Score: 162
Period size: 14 Copynumber: 8.2 Consensus size: 14
67938 ACAACAACAA
67948 CAACACCAACACAC
1 CAACACCAACACAC
67962 CAACACACCAACACAC
1 C-A-ACACCAACACAC
67978 CAACACC-A-ACAC
1 CAACACCAACACAC
67990 CAACACCAACACAC
1 CAACACCAACACAC
68004 CAACACCAACACAC
1 CAACACCAACACAC
* * *
68018 CGATAACAACACAC
1 CAACACCAACACAC
*
68032 CAACACCAACACTC
1 CAACACCAACACAC
68046 CAACACCAACACAC
1 CAACACCAACACAC
68060 CAA
1 CAA
68063 TAAGAGGGGG
Statistics
Matches: 89, Mismatches: 8, Indels: 8
0.85 0.08 0.08
Matches are distributed among these distances:
12 11 0.12
13 2 0.02
14 61 0.69
15 2 0.02
16 13 0.15
ACGTcount: A:0.50, C:0.48, G:0.01, T:0.02
Consensus pattern (14 bp):
CAACACCAACACAC
Left flanking sequence: Indices 67448 -- 67947
ATAATGAATCTTGTTAGAGAATAGAACGGTCCCCTCACCTTAGTCTATACGACGGGACTATACGA
CGAAGGTTCACTAATATTGGTAGAAAACTTTACGAGCATTACATAACCGCTTTACGAGCTGACCT
AATGTATTGGTGCGGCTCAAGCAACCCATGTGATATTTGTCACGTGACTTTACTGTTGATACCGT
AGATAGCGTTGATTATGGGGAACCTGTATATATCCTATATATTACAATAAGCCCTCAGTACGGCT
TCAGGGTAGCCCGCTCATGCAGGCTATCCCCAAGGCGCACCCAGTGCTTAACTAAATAATTATAG
AAACCCGGATTGGATACCAATGGCACCACCAACAGGGGGAAAAAACGGTGCCAATGGCACCCGAT
CCAACGAATCGAATCGGATACCATTTGCACCACCAACAGGGGGAAAAGGAGCCATTGGCATCCAA
CCCTTAAACAACCTCCAGCAACAACAACAACAAAAACAACAACAA
Right flanking sequence: Indices 68063 -- 68562
TAAGAGGGGGTGGTACTTCTAATACTTCTGATATCGTCTCTCATATGGCAAAGGAAGCGAAGCCC
AGAGGCTTGCAACTCCCCGCGCCGACCACGGGATGGTTCTGTGGCGATACCGCCCATCCTGACGC
TAGATTGCACCTCCCACCTCCCGGCCCGTCGGCCATCGAGTAGAAGCGTGCAACTGCACATGTCA
GGACTGTTCGAGGACCCGTAGCTGGTGGGTCGCGACGCCACCAGTAACAAGCCCTGTCACCAGAC
CAACAAACGCTGAGCCACTACCATGGCGCGAAGCGCCAACGGATAATGACCCTGCCGAGAGATTC
CATCAGAAGTAACAGCAGCACCGAGGCTGTGGTGAGCAAGTATCACCACGCTAACGACAAGCTTT
TGTAGCCTCCTTGAGGGGATTTTTTTCCCCCATCTTCTTTGATTTCTTCTTTGCTTGTCGCTGCC
TTCCGTAGTAACGGGAAAAAAGCCGGGCTTGCAGGGTGCAAGCGA
Found at i:68015 original size:6 final size:6
Alignment explanation
Indices: 67937--68057 Score: 81
Period size: 6 Copynumber: 19.8 Consensus size: 6
67927 CAACAACAAA
* * * *
67937 AACAAC AACAAC AACACC AACA-C ACCAAC -ACACC AACACACC AACACC
1 AACACC AACACC AACACC AACACC AACACC AACACC -A-ACACC AACACC
* * *
67985 AACACC AACACC AACACACC AACACC AACA-C ACCGA-T AACAAC -ACACC
1 AACACC AACACC -A-ACACC AACACC AACACC AAC-ACC AACACC AACACC
68033 AACACC AACACTCC AACACC AACAC
1 AACACC AACA--CC AACACC AACAC
68058 ACCAATAAGA
Statistics
Matches: 95, Mismatches: 9, Indels: 22
0.75 0.07 0.17
Matches are distributed among these distances:
5 15 0.16
6 61 0.64
7 3 0.03
8 16 0.17
ACGTcount: A:0.51, C:0.46, G:0.01, T:0.02
Consensus pattern (6 bp):
AACACC
Left flanking sequence: Indices 67437 -- 67936
ATGAGTATTACATAATGAATCTTGTTAGAGAATAGAACGGTCCCCTCACCTTAGTCTATACGACG
GGACTATACGACGAAGGTTCACTAATATTGGTAGAAAACTTTACGAGCATTACATAACCGCTTTA
CGAGCTGACCTAATGTATTGGTGCGGCTCAAGCAACCCATGTGATATTTGTCACGTGACTTTACT
GTTGATACCGTAGATAGCGTTGATTATGGGGAACCTGTATATATCCTATATATTACAATAAGCCC
TCAGTACGGCTTCAGGGTAGCCCGCTCATGCAGGCTATCCCCAAGGCGCACCCAGTGCTTAACTA
AATAATTATAGAAACCCGGATTGGATACCAATGGCACCACCAACAGGGGGAAAAAACGGTGCCAA
TGGCACCCGATCCAACGAATCGAATCGGATACCATTTGCACCACCAACAGGGGGAAAAGGAGCCA
TTGGCATCCAACCCTTAAACAACCTCCAGCAACAACAACAACAAA
Right flanking sequence: Indices 68058 -- 68557
ACCAATAAGAGGGGGTGGTACTTCTAATACTTCTGATATCGTCTCTCATATGGCAAAGGAAGCGA
AGCCCAGAGGCTTGCAACTCCCCGCGCCGACCACGGGATGGTTCTGTGGCGATACCGCCCATCCT
GACGCTAGATTGCACCTCCCACCTCCCGGCCCGTCGGCCATCGAGTAGAAGCGTGCAACTGCACA
TGTCAGGACTGTTCGAGGACCCGTAGCTGGTGGGTCGCGACGCCACCAGTAACAAGCCCTGTCAC
CAGACCAACAAACGCTGAGCCACTACCATGGCGCGAAGCGCCAACGGATAATGACCCTGCCGAGA
GATTCCATCAGAAGTAACAGCAGCACCGAGGCTGTGGTGAGCAAGTATCACCACGCTAACGACAA
GCTTTTGTAGCCTCCTTGAGGGGATTTTTTTCCCCCATCTTCTTTGATTTCTTCTTTGCTTGTCG
CTGCCTTCCGTAGTAACGGGAAAAAAGCCGGGCTTGCAGGGTGCA
Found at i:74077 original size:11 final size:11
Alignment explanation
Indices: 74063--74101 Score: 53
Period size: 11 Copynumber: 3.5 Consensus size: 11
74053 TCGAAGATCA
74063 CTCCCGATCTC
1 CTCCCGATCTC
74074 CTCCCGATCTC
1 CTCCCGATCTC
*
74085 CTCCTGAAT-TC
1 CTCCCG-ATCTC
74096 CTCCCG
1 CTCCCG
74102 TTTTACTCCC
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
11 23 0.92
12 2 0.08
ACGTcount: A:0.10, C:0.51, G:0.10, T:0.28
Consensus pattern (11 bp):
CTCCCGATCTC
Left flanking sequence: Indices 73563 -- 74062
GAATAGTAGAACGTTTGGTGGTACTAGTGAGTGTCAATGTGTATGAGTTGTCAACTGTGGCTGGT
TTGCACCGGTTTTGTTAGTGTGCTGCCGGGGATCGGGGTTTCAGTGTGAAGAGGGAAATCGTTCA
CCAGTCCAAGATTCCCAGAATAAAAGCATCAGTTTGATAGATTGGTCTAGGTACTTTTCTTTTCT
TTTACGTGTCCTCACTTCCCAGATCTCACAATTCCACTCCGACCCTCTCGTCCTCACACCGCGTT
TGGTAGACGCGCTCGATGATAAACAAATCCACTCGATCCACAACAGACCTGAAAAGCTCACACCA
AGCACGCTACGTTTTCCCAGCGGCTTATTCCACTCGTTTGACGTACTCTGGACACTCCTAGTACA
CCCCAAGCTCCACCATTGGCTGGATACCCGCGTCAAGGTCGTTGTTTACCCGCACTTTTCACCGT
GCCAAGGTTGTTTTGACATCATCCCCAAGGCTTACTCGAAGATCA
Right flanking sequence: Indices 74102 -- 74601
TTTTACTCCCGAGTTACTCCCAAGACCTTCCCATCGTCCTCCGAGCCTCCTCCCATCATCCTCCC
ATCCTTCTGACCCGATACCCTTGCCATAGCTCCACCAACAATCCACGTCCATGGCAAAACGCTAC
AGTATCATCCCCTCGAACCACGTGTCCGACGAGGTGGCCCGTATCGAGGAGCTCGATCAGGAAAT
CACGCTCGCTCTCCTCCAGGTCGACAACAACATTCTGCGTGCCACCAACATCATCAACGACAAGT
TCTTGCCGATCATCCGGCGCTACCTGGCCTCGCTGCGGGGCATCAATGACAGCGTCAAGTTCTGG
AAGCTCTTCTTTGAAGGTCTGGTGGGCACCGAGCTCATGACCCGGGAGGAGCCCCTCCTGGCAGC
TTCCCGGTCGCTCAACTTTCACGAGGACTCGTTGAGTGCCAGCGGCGACCAGAACCTCTCCACCA
CCACTACAGACGCGCCGAAATACCCCCCGTTGTTCCCCAGCTCTG
Found at i:75267 original size:24 final size:24
Alignment explanation
Indices: 75240--75306 Score: 91
Period size: 24 Copynumber: 2.8 Consensus size: 24
75230 CAAAGCCTAC
75240 ACCCAGCTGCCACGAGTACGCACG
1 ACCCAGCTGCCACGAGTACGCACG
* *
75264 ACCCAGCTGCCACGCAG-ACTCACT
1 ACCCAGCTGCCACG-AGTACGCACG
*
75288 ACCCAGCTGCCACGCGTAC
1 ACCCAGCTGCCACGAGTAC
75307 AAATCACCTA
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
23 1 0.03
24 35 0.92
25 2 0.05
ACGTcount: A:0.24, C:0.45, G:0.21, T:0.10
Consensus pattern (24 bp):
ACCCAGCTGCCACGAGTACGCACG
Left flanking sequence: Indices 74740 -- 75239
GCGACGAGTTCTACTCACCCACGTTTCCCCTGCCGCCTACGCTCAAGCTGGACCTTGGCCCCTCG
CCCGTGGAGATTCACGAGCCCCTGCTGGCTACGGGGCTCCACCTGTCGCCTACGCGGGGCACGCG
TGCTGAGGATGATAGCGAGCCGTTGATGAGACCACCGAGACTCAGCATGTACTCCGAGGCTAGTC
CTCAGAAGGGGATATCTCCCCAGAAAGCGTTTTCTCCTATAGTCTCCCCGCCAAAGGCTTTGCCG
TCTCAACGGGCTAAGTCCCGTGACAACGATAGCGGACCAGTTATGGTCCCTCCCAGACTCAGTGT
GTACTCCGAGCAATTGCCTGGTTCTACGTTGCTCGCGTCGGCGTTGTCCACCCAGCCGGAGGAGG
ACTTGTCCATGGAGCCTCCCAGACTCAGTATCCATTCCCAGCCGGCCTCCGAGGGCCGCTCTCAC
CCGCCCACCCCCGGATCGGTGGCAAAACTGCCCGCCAAAGCCTAC
Right flanking sequence: Indices 75307 -- 75806
AAATCACCTACCTGCCACGCGTTCTCACCACCTATCTGCCTCGTATTCCCTCTACCCAGCTGGCC
CGCCTTTCCCACCTGCCATCCGTCTCCGCCCAACCAGGGCTCCACACCGACCCGCTTGAGCCGAT
GGCCAAGCGTCCACGGGTGGCAGAACCAGCGTCCGAACCTATCCGGCCACCCGAGGCGCTGCCTG
TGCTTGCTCCGTCCACAGCCCGCCGCACAACGATGGGGGCAGTGGCCACTCCCGAGGTGGAGGGC
GGAGTGAGCTTGGAGGAGTATTTTGGGCCGTTGGCCCAGAGCTGGCGCAAATTGGTGGAGAGCTC
GCCTCAGCCACCCAACGGGGCTCACCTGGGACTCCGCTAATAGTGTCTTTACTTCTTTGTCGTGT
CATGGGTGCATAATACGGAATGAGGCCGCCTTGCTCCAGTGCCTCTTTGCTACGCGCCGTGCTTG
TGCCGAACGCCGTAGTATGAGTGTTCGGTGTACAGGGTCTATGAG
Done.