Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: scaffold25
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 256610
ACGTcount: A:0.22, C:0.28, G:0.28, T:0.22
Warning! 1 characters in sequence are not A, C, G, or T
File 1 of 3
Found at i:1642 original size:15 final size:16
Alignment explanation
Indices: 1617--1647 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
1607 TATGTCTCTA
1617 CAACTACCGATACCAC
1 CAACTACCGATACCAC
1633 CAAC-ACCGATACCAC
1 CAACTACCGATACCAC
1648 ACTACCACCA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 11 0.73
16 4 0.27
ACGTcount: A:0.39, C:0.45, G:0.06, T:0.10
Consensus pattern (16 bp):
CAACTACCGATACCAC
Left flanking sequence: Indices 1117 -- 1616
AGGACAACTTGATACGAGTGATAAATTTCCAGCTCAGGTCCATGTGCTCGTGGCGTGTTCATGAC
AAGGAGCACCCGGATGAGGGAATTGTTATCCCATCCACGGGAGAACGGTATTGACCATCAACAAA
CGCGAAAAAAGCCATTACATAGCAGTTTGCGGCCTATATTGTGAGGCGGTTGCAAATGCTATTCA
CGATGGTCTCTTCTCACGACACTAAAGTCGAGTTGTCCATGGGGAAATGAGTCCAAGTGGACGAC
CAGCGAACGTAGGTCGTTTCACTCTGGGTTACACAAAGATCGTTTGACAAAAAGGCGCTTCCACT
ACTTTGACTGTGGATCATCTATTTACCCCATTGGTTAAGCGGTATCGAGTTTTCCTACATTGGCA
TACATCAATGAGCAACAGACAAGAGTCATGTAAGGTGGTGATTGTCCATACTAGAAACCATTGTA
GCGGTGAGGCCAACGATATAGTCACCGCCTGAGTGTATGTCTCTA
Right flanking sequence: Indices 1648 -- 2147
ACTACCACCACCAATTCATACCATTCAACCACATCAGATTTTGAGGTTTACCAGCCAAAAGAGAA
CAAGGCTGTCACCATTGTTGGTTTAATTACGACAGGCAACCCCGTCCACGCATTCACCTACTTCA
CTGTTCCCGACAGACTTCACACGTCTTGACGAATCGGGCAACTGAACAAGTCTTAGTGGGAGGTG
ATGTTTTAAGGCATCAGTCACCACGGGACGATGGGCTTATAATTGGTCGTTTAGCTAGGGTAGTA
GGGCGGCAGCAAACTAGGTAATAATATCATAGCTTAGGGCCACCATAGTGGTTTGCGAGTTAGAG
CTCAGTTATGCTAAAATTTTATCAAATCCAAATGAATATGATAGGAATCCGGTCCTTGAGGGGCC
CGAGATACCGTGGGGTTAGAGACGTTGTCTCTCTCAGAAGGTCTCGACATTTCGCTAAAACACTC
AATTGATCAATAAGCTTTACTTGTACGGTTTAGAGTCCTCGATCA
Found at i:4227 original size:36 final size:36
Alignment explanation
Indices: 4132--4338 Score: 174
Period size: 36 Copynumber: 5.9 Consensus size: 36
4122 TTAAATTCAG
* ** *
4132 CAGAGTAAACTGCATGTAAATTTGCAGAGTA--T--
1 CAGAGTAGACTGCATACAATTTTGCAGAGTATTTGA
* ****
4164 CAGAGTAGCCTGCATACAAACCAGCAGAGTATTTGA
1 CAGAGTAGACTGCATACAATTTTGCAGAGTATTTGA
*
4200 CAGAGTAGCCTGCATACAATTTTGCAGAGTATTT-A
1 CAGAGTAGACTGCATACAATTTTGCAGAGTATTTGA
** * *
4235 GCAGAGTTTACTGCATACAATTATGCAGAGTATTTGG
1 -CAGAGTAGACTGCATACAATTTTGCAGAGTATTTGA
** * *
4272 CAGAGTTTACTGCATACATTTTTGCAGAGT-TTTGGG
1 CAGAGTAGACTGCATACAATTTTGCAGAGTATTT-GA
* *
4308 CAGAGTAGACTGCATTCAATTTAGCAGAGTA
1 CAGAGTAGACTGCATACAATTTTGCAGAGTA
4339 GAATGCATAT
Statistics
Matches: 144, Mismatches: 23, Indels: 11
0.81 0.13 0.06
Matches are distributed among these distances:
32 24 0.17
34 1 0.01
35 4 0.03
36 115 0.80
ACGTcount: A:0.32, C:0.16, G:0.23, T:0.29
Consensus pattern (36 bp):
CAGAGTAGACTGCATACAATTTTGCAGAGTATTTGA
Left flanking sequence: Indices 3632 -- 4131
GCGTACAACGCCAGGAATATGTTGCTGCCAACCAGGCCAGCCGAATTGACGGTTCCTAAAGCCGT
CGATCGCCTTTGTTCCGGAGTTCACAAGCCATCCAATGACTAACACGTTTTGGCTCAATCAAAAT
GACCGCAACAAGCCAGCTGAAGGCTCCATGCCAGCTAGAGCCAATCAGAAACACCAGCTATGCCA
TGGACAGCCCATATCAGGCCTATTTGATGGGGTTGTGTCGTGTGTTGACCTGTGGGCGGCGTTGA
GAAAGCACTGGCAGTTACGAGAGAGTTACGAGAGAATTGCTGCACGTGAAGCTAATTGCGAGCTA
TATCCGCTACACAAGCCTTATTTTCCGAGACGACTGCACACAAGCTTTTTTGCAGAGCAAAATAC
GCTTTTCAGCAGATTTCACTGCACAGAGATACAATTTAGCAGAGTACACATATTTATTAGCAGAG
TAAACTGTATATAAGTGCATTTTAGCAGAGTAGACTTAAATTCAG
Right flanking sequence: Indices 4339 -- 4838
GAATGCATATAATGGAGCAGAGTTTCCTACACCTTGTCCTAAGGAACCCTGTATATTGTGGCTAG
ATTGGAGTGCATGTATTACTTGACGGAAAAACGAAGTGACAGTTCTACAAATGGCGGTGCCGTAG
GTTTCGTATTCTGTGTATTATACGAGGTACATAGCTTGCATGAGAACCATGCAGGCTAATGCATC
TCGTGCATATATTATTTTTAAATTATAAACCCGGTCTGGTTGTTGGCCCGGGGGCCCCAGCTAGA
ATAATAGTACAGTGTGCCTACACCTATATAGACTTGCTGGGTAACCCGGCAACCAGACACTCCCC
TAACCCCTGCTTTGGGAGCAAGTTCCATTGATTCCGCGAGAGAGAGCTAGACTGCTCCCTCCAGA
CGCCGTTACCACAGACTCAGCAGTGCCGTAGCACCCACCCTGGGAGCCAGATTGCCCACTTCAGA
CCTCCAGGCCACGCGACCATCGGGGAAGTGTTAGCAACTGACGGG
Found at i:4267 original size:72 final size:72
Alignment explanation
Indices: 4164--4338 Score: 201
Period size: 72 Copynumber: 2.4 Consensus size: 72
4154 TGCAGAGTAT
* *** *
4164 CAGAGTAGCCTGCATACAAACCAGCAGAGTATTTGACAGAGTAGCCTGCATACAATTTTGCAGAG
1 CAGAGTAGACTGCATACAATTTAGCAGAGTATTTGACAGAGTAGACTGCATACAATTTTGCAGAG
4229 TATTT-AG
66 T-TTTGAG
** * ** *
4236 CAGAGTTTACTGCATACAA-TTATGCAGAGTATTTGGCAGAGTTTACTGCATACATTTTTGCAGA
1 CAGAGTAGACTGCATACAATTTA-GCAGAGTATTTGACAGAGTAGACTGCATACAATTTTGCAGA
*
4300 GTTTTGGG
65 GTTTTGAG
*
4308 CAGAGTAGACTGCATTCAATTTAGCAGAGTA
1 CAGAGTAGACTGCATACAATTTAGCAGAGTA
4339 GAATGCATAT
Statistics
Matches: 86, Mismatches: 14, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
71 4 0.05
72 79 0.92
73 3 0.03
ACGTcount: A:0.31, C:0.17, G:0.23, T:0.30
Consensus pattern (72 bp):
CAGAGTAGACTGCATACAATTTAGCAGAGTATTTGACAGAGTAGACTGCATACAATTTTGCAGAG
TTTTGAG
Left flanking sequence: Indices 3664 -- 4163
CAGGCCAGCCGAATTGACGGTTCCTAAAGCCGTCGATCGCCTTTGTTCCGGAGTTCACAAGCCAT
CCAATGACTAACACGTTTTGGCTCAATCAAAATGACCGCAACAAGCCAGCTGAAGGCTCCATGCC
AGCTAGAGCCAATCAGAAACACCAGCTATGCCATGGACAGCCCATATCAGGCCTATTTGATGGGG
TTGTGTCGTGTGTTGACCTGTGGGCGGCGTTGAGAAAGCACTGGCAGTTACGAGAGAGTTACGAG
AGAATTGCTGCACGTGAAGCTAATTGCGAGCTATATCCGCTACACAAGCCTTATTTTCCGAGACG
ACTGCACACAAGCTTTTTTGCAGAGCAAAATACGCTTTTCAGCAGATTTCACTGCACAGAGATAC
AATTTAGCAGAGTACACATATTTATTAGCAGAGTAAACTGTATATAAGTGCATTTTAGCAGAGTA
GACTTAAATTCAGCAGAGTAAACTGCATGTAAATTTGCAGAGTAT
Right flanking sequence: Indices 4339 -- 4838
GAATGCATATAATGGAGCAGAGTTTCCTACACCTTGTCCTAAGGAACCCTGTATATTGTGGCTAG
ATTGGAGTGCATGTATTACTTGACGGAAAAACGAAGTGACAGTTCTACAAATGGCGGTGCCGTAG
GTTTCGTATTCTGTGTATTATACGAGGTACATAGCTTGCATGAGAACCATGCAGGCTAATGCATC
TCGTGCATATATTATTTTTAAATTATAAACCCGGTCTGGTTGTTGGCCCGGGGGCCCCAGCTAGA
ATAATAGTACAGTGTGCCTACACCTATATAGACTTGCTGGGTAACCCGGCAACCAGACACTCCCC
TAACCCCTGCTTTGGGAGCAAGTTCCATTGATTCCGCGAGAGAGAGCTAGACTGCTCCCTCCAGA
CGCCGTTACCACAGACTCAGCAGTGCCGTAGCACCCACCCTGGGAGCCAGATTGCCCACTTCAGA
CCTCCAGGCCACGCGACCATCGGGGAAGTGTTAGCAACTGACGGG
Found at i:4357 original size:24 final size:24
Alignment explanation
Indices: 4307--4361 Score: 67
Period size: 24 Copynumber: 2.3 Consensus size: 24
4297 AGAGTTTTGG
* **
4307 GCAGAGTAGACTGCATTCAATTTA
1 GCAGAGTAGAATGCATTCAATGGA
4331 GCAGAGTAGAATGCATAT-AATGGA
1 GCAGAGTAGAATGCAT-TCAATGGA
4355 GCAGAGT
1 GCAGAGT
4362 TTCCTACACC
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
24 26 0.96
25 1 0.04
ACGTcount: A:0.36, C:0.13, G:0.27, T:0.24
Consensus pattern (24 bp):
GCAGAGTAGAATGCATTCAATGGA
Left flanking sequence: Indices 3807 -- 4306
CAGAAACACCAGCTATGCCATGGACAGCCCATATCAGGCCTATTTGATGGGGTTGTGTCGTGTGT
TGACCTGTGGGCGGCGTTGAGAAAGCACTGGCAGTTACGAGAGAGTTACGAGAGAATTGCTGCAC
GTGAAGCTAATTGCGAGCTATATCCGCTACACAAGCCTTATTTTCCGAGACGACTGCACACAAGC
TTTTTTGCAGAGCAAAATACGCTTTTCAGCAGATTTCACTGCACAGAGATACAATTTAGCAGAGT
ACACATATTTATTAGCAGAGTAAACTGTATATAAGTGCATTTTAGCAGAGTAGACTTAAATTCAG
CAGAGTAAACTGCATGTAAATTTGCAGAGTATCAGAGTAGCCTGCATACAAACCAGCAGAGTATT
TGACAGAGTAGCCTGCATACAATTTTGCAGAGTATTTAGCAGAGTTTACTGCATACAATTATGCA
GAGTATTTGGCAGAGTTTACTGCATACATTTTTGCAGAGTTTTGG
Right flanking sequence: Indices 4362 -- 4861
TTCCTACACCTTGTCCTAAGGAACCCTGTATATTGTGGCTAGATTGGAGTGCATGTATTACTTGA
CGGAAAAACGAAGTGACAGTTCTACAAATGGCGGTGCCGTAGGTTTCGTATTCTGTGTATTATAC
GAGGTACATAGCTTGCATGAGAACCATGCAGGCTAATGCATCTCGTGCATATATTATTTTTAAAT
TATAAACCCGGTCTGGTTGTTGGCCCGGGGGCCCCAGCTAGAATAATAGTACAGTGTGCCTACAC
CTATATAGACTTGCTGGGTAACCCGGCAACCAGACACTCCCCTAACCCCTGCTTTGGGAGCAAGT
TCCATTGATTCCGCGAGAGAGAGCTAGACTGCTCCCTCCAGACGCCGTTACCACAGACTCAGCAG
TGCCGTAGCACCCACCCTGGGAGCCAGATTGCCCACTTCAGACCTCCAGGCCACGCGACCATCGG
GGAAGTGTTAGCAACTGACGGGGACCCAGGGCTGTCCAGGAGACC
Found at i:6756 original size:23 final size:23
Alignment explanation
Indices: 6721--6771 Score: 75
Period size: 23 Copynumber: 2.2 Consensus size: 23
6711 TAGGACCCAC
*
6721 GGAGGGCCACGTACGGTATCCAT
1 GGAGGACCACGTACGGTATCCAT
* *
6744 GGAGGACCGCGTACGGTGTCCAT
1 GGAGGACCACGTACGGTATCCAT
6767 GGAGG
1 GGAGG
6772 GCGACCTACG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.20, C:0.24, G:0.41, T:0.16
Consensus pattern (23 bp):
GGAGGACCACGTACGGTATCCAT
Left flanking sequence: Indices 6221 -- 6720
GGGGCAAGAATAGTTTGCGAGGAAAGTTGAGTAGCGCATCGGGGAAAGTAGAACACTTTCCCCGC
CATTGAAGAAGGAAAATACAGGGTGTTCAGGGAATTGGAGCCTTAGGCGGGGCCATACCACAATA
GCATTGTAGAAAGTGTAACAAGCTGGGGCAAGGACAGTTTGCGAAGGAAAGTGGAATGGTGCGTC
AAAAATAGTCCGCATCATGCAGTGAGACGTCCCAGAGCTCCAACAACGGCCCATTGGCCGATCCA
AAAACGTCCTTGTGGCGATCCACCCGTATCTGAATGCCCCAAAACTTCCCAGGCTCCGATCGGGT
ATCTTCTCGCTTAATTAGCGACATTTTGCAGCCATTCCAAACACGAAAGTGGGGAAGGCTTGGAA
CCCGCCTTTCTCTGCGAGCCCTTTGGGCCCTACGGTTGGCGAGCTAGCTACGGTCACCCCATATT
TGCACCTAGAAGGGTCACCCACGGTCGGGTGGATGTAGGACCCAC
Right flanking sequence: Indices 6772 -- 7271
GCGACCTACGGCCACCTGGGGAATAGCTTTGCAGAGAATCTACGAGAATTGAGGTACGAACTCAG
TTGGATCTAGGCTCACCGAGGTGCATCAACATTTTAAAGCATCGTCACCATGGTATAATTGCAGA
GCATCGTCACCAGGGTGTAGATTACAGAGAAGCCAAGAGAAGTCACGTAAAAGAGGGGCCAACGC
CCCATCGCTAAAATCATGATGTTTATGCTATGCTATTTGCTGCCCATGCGTCGGCGTTTAGACTC
ACTCACCATCTCAATGTCGTCGTCGTCCAGCGAGCCCACCAGGAGCCCGCGAACACTGCTGTTGA
TGGCCGACACGGGCTCATCGTCGCTGATTTCCAACGGCTCGTCCTTGGGCCGCTGTCGTTTGTCT
GGGATCTTACCCGACCGCGTTCGACCGTTGCTGAGGGGGCCGCTAGGGCTAGGCTGCTCGTGGGT
GATGGCACAGTCGTCGTCGGAGTCTACTTCGTCGGCGGAGCGCTT
Found at i:6781 original size:23 final size:23
Alignment explanation
Indices: 6721--6782 Score: 72
Period size: 23 Copynumber: 2.7 Consensus size: 23
6711 TAGGACCCAC
*
6721 GGAGGGCCACGTACGGTATCCAT
1 GGAGGGCGACGTACGGTATCCAT
* *
6744 GGAGGACCG-CGTACGGTGTCCAT
1 GGAGG-GCGACGTACGGTATCCAT
*
6767 GGAGGGCGACCTACGG
1 GGAGGGCGACGTACGG
6783 CCACCTGGGG
Statistics
Matches: 32, Mismatches: 5, Indels: 4
0.78 0.12 0.10
Matches are distributed among these distances:
22 2 0.06
23 29 0.91
24 1 0.03
ACGTcount: A:0.19, C:0.26, G:0.40, T:0.15
Consensus pattern (23 bp):
GGAGGGCGACGTACGGTATCCAT
Left flanking sequence: Indices 6221 -- 6720
GGGGCAAGAATAGTTTGCGAGGAAAGTTGAGTAGCGCATCGGGGAAAGTAGAACACTTTCCCCGC
CATTGAAGAAGGAAAATACAGGGTGTTCAGGGAATTGGAGCCTTAGGCGGGGCCATACCACAATA
GCATTGTAGAAAGTGTAACAAGCTGGGGCAAGGACAGTTTGCGAAGGAAAGTGGAATGGTGCGTC
AAAAATAGTCCGCATCATGCAGTGAGACGTCCCAGAGCTCCAACAACGGCCCATTGGCCGATCCA
AAAACGTCCTTGTGGCGATCCACCCGTATCTGAATGCCCCAAAACTTCCCAGGCTCCGATCGGGT
ATCTTCTCGCTTAATTAGCGACATTTTGCAGCCATTCCAAACACGAAAGTGGGGAAGGCTTGGAA
CCCGCCTTTCTCTGCGAGCCCTTTGGGCCCTACGGTTGGCGAGCTAGCTACGGTCACCCCATATT
TGCACCTAGAAGGGTCACCCACGGTCGGGTGGATGTAGGACCCAC
Right flanking sequence: Indices 6783 -- 7282
CCACCTGGGGAATAGCTTTGCAGAGAATCTACGAGAATTGAGGTACGAACTCAGTTGGATCTAGG
CTCACCGAGGTGCATCAACATTTTAAAGCATCGTCACCATGGTATAATTGCAGAGCATCGTCACC
AGGGTGTAGATTACAGAGAAGCCAAGAGAAGTCACGTAAAAGAGGGGCCAACGCCCCATCGCTAA
AATCATGATGTTTATGCTATGCTATTTGCTGCCCATGCGTCGGCGTTTAGACTCACTCACCATCT
CAATGTCGTCGTCGTCCAGCGAGCCCACCAGGAGCCCGCGAACACTGCTGTTGATGGCCGACACG
GGCTCATCGTCGCTGATTTCCAACGGCTCGTCCTTGGGCCGCTGTCGTTTGTCTGGGATCTTACC
CGACCGCGTTCGACCGTTGCTGAGGGGGCCGCTAGGGCTAGGCTGCTCGTGGGTGATGGCACAGT
CGTCGTCGGAGTCTACTTCGTCGGCGGAGCGCTTTCGTGAGTTGT
Found at i:7489 original size:18 final size:18
Alignment explanation
Indices: 7466--7514 Score: 62
Period size: 18 Copynumber: 2.7 Consensus size: 18
7456 AGCACCACAT
7466 GGGTTCGAGACTCCAAAC
1 GGGTTCGAGACTCCAAAC
* * *
7484 GGGTTCTAGACTCCAGAT
1 GGGTTCGAGACTCCAAAC
*
7502 GGGTTCGGGACTC
1 GGGTTCGAGACTC
7515 GTCCCAGTGG
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
18 26 1.00
ACGTcount: A:0.20, C:0.24, G:0.33, T:0.22
Consensus pattern (18 bp):
GGGTTCGAGACTCCAAAC
Left flanking sequence: Indices 6966 -- 7465
CCCCATCGCTAAAATCATGATGTTTATGCTATGCTATTTGCTGCCCATGCGTCGGCGTTTAGACT
CACTCACCATCTCAATGTCGTCGTCGTCCAGCGAGCCCACCAGGAGCCCGCGAACACTGCTGTTG
ATGGCCGACACGGGCTCATCGTCGCTGATTTCCAACGGCTCGTCCTTGGGCCGCTGTCGTTTGTC
TGGGATCTTACCCGACCGCGTTCGACCGTTGCTGAGGGGGCCGCTAGGGCTAGGCTGCTCGTGGG
TGATGGCACAGTCGTCGTCGGAGTCTACTTCGTCGGCGGAGCGCTTTCGTGAGTTGTCAAACAGC
CCGGAAAGAGTGATTGGGTGAGCCTCGTCCCCCTGGCGAGGAGACGAGAGACTGGGTGGGGACTT
GCGCGATCCAGAAGGCGATAAGCGGGACTGCAGAAATCGGGCTGCCTTCAAACTGGGAGCGAGTG
GTTGAGGTTCCTTTGACTCTTGGGAGGACTGAGACAGCACCACAT
Right flanking sequence: Indices 7515 -- 8014
GTCCCAGTGGCCTGGGCTCTTGCGGTTGACGTGACAGACCTTGTCGTTGCGGACCTTGAGAACAG
GCTCCTCAAGGACCATATCCGGCTCGGTCAGGCGGAGAGCTGCGAGGAAGCCATCGCCAATGGCA
GCTGGCGCCTCTGGCAGCGGCTCTTTGCTGTCGGCTGGGAGGACCGACGACCCCTCTTCGAACTC
CTCGTCGGACTCGATGAGCGCCGCGTGCCTGGCTGGAGGCGACGACGGCGGGGACGACGGTGGCT
TGGCCTTCCTGTTGTTTTTGGCCTCCTCTCGCCGCTGTCTCAGCTGCGCCATCAACAAGTCATAC
ACCCCCGGGTTGGTCTTCTCTGTCTTTTCAGGCCTTTCGGACTTTTTGGCTGCTTTTTTAGGTGG
CATTTCAGCTGGCATTTCAGCTGGTCGTTCAGCTGGCCTTTCTGGCCTTTCTGGCTTTTCAGCTG
GCCTTTCAGCCAGCTTCCCAGACTTTTTCGAGTCCTCAACCGGTG
Found at i:7976 original size:12 final size:12
Alignment explanation
Indices: 7902--7979 Score: 69
Period size: 12 Copynumber: 7.0 Consensus size: 12
7892 CTTTTTTAGG
*
7902 TGGCATTTCAGC
1 TGGCCTTTCAGC
*
7914 TGGCATTTCAGC
1 TGGCCTTTCAGC
* *
7926 TGGTCGTTCAGC
1 TGGCCTTTCAGC
7938 TGGCCTTT---C
1 TGGCCTTTCAGC
7947 TGGCCTTT---C
1 TGGCCTTTCAGC
*
7956 TGGCTTTTCAGC
1 TGGCCTTTCAGC
7968 TGGCCTTTCAGC
1 TGGCCTTTCAGC
7980 CAGCTTCCCA
Statistics
Matches: 56, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
9 17 0.30
12 39 0.70
ACGTcount: A:0.09, C:0.28, G:0.26, T:0.37
Consensus pattern (12 bp):
TGGCCTTTCAGC
Left flanking sequence: Indices 7402 -- 7901
TTCAAACTGGGAGCGAGTGGTTGAGGTTCCTTTGACTCTTGGGAGGACTGAGACAGCACCACATG
GGTTCGAGACTCCAAACGGGTTCTAGACTCCAGATGGGTTCGGGACTCGTCCCAGTGGCCTGGGC
TCTTGCGGTTGACGTGACAGACCTTGTCGTTGCGGACCTTGAGAACAGGCTCCTCAAGGACCATA
TCCGGCTCGGTCAGGCGGAGAGCTGCGAGGAAGCCATCGCCAATGGCAGCTGGCGCCTCTGGCAG
CGGCTCTTTGCTGTCGGCTGGGAGGACCGACGACCCCTCTTCGAACTCCTCGTCGGACTCGATGA
GCGCCGCGTGCCTGGCTGGAGGCGACGACGGCGGGGACGACGGTGGCTTGGCCTTCCTGTTGTTT
TTGGCCTCCTCTCGCCGCTGTCTCAGCTGCGCCATCAACAAGTCATACACCCCCGGGTTGGTCTT
CTCTGTCTTTTCAGGCCTTTCGGACTTTTTGGCTGCTTTTTTAGG
Right flanking sequence: Indices 7980 -- 8479
CAGCTTCCCAGACTTTTTCGAGTCCTCAACCGGTGCAACCGTTACTTCTACTTTCTGATCAGGCT
TTTCCACAGGCTCCTTCTCAACCTCCTTCTCAAGCACATCCTTTGGCTTCTCAAGCCCCTCCTTT
GGCTTTTTATCGCCGTCCTCCGCAGTCTTCTCTGGTTCCTGCTCTTCCACCTCCATGACGTCATC
GTCTTCCTCGTCCTCCTCGCGAGCTTCCCCCTTGGGAACCGCTCCGTGGAGCCTCTGCAACACCC
CAATCAACTGGCGCCGAGAGCCCACCCGCAGTGCTGCAGGAAACACCCGTTTCATGTCCTGGCGC
TTCGGATGGCGCCAGTAGCGCTCCACGCCCGCGGGATCACGGGCCCACGCTCTCACATTCAAAAT
TACGTGGATACCGCAGTCGTTGAAGTTGTTTTGCTTGGGAACCAGCACGTTCTTCACCAAGATCA
TCGCCTTTTCCACCTCCACCTGGTGTCGCTCGGCACAGTAGTCGA
Found at i:8096 original size:21 final size:21
Alignment explanation
Indices: 8070--8114 Score: 72
Period size: 21 Copynumber: 2.1 Consensus size: 21
8060 TCTCAACCTC
8070 CTTCTCAAGCACATCCTTTGG
1 CTTCTCAAGCACATCCTTTGG
* *
8091 CTTCTCAAGCCCCTCCTTTGG
1 CTTCTCAAGCACATCCTTTGG
8112 CTT
1 CTT
8115 TTTATCGCCG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.13, C:0.38, G:0.13, T:0.36
Consensus pattern (21 bp):
CTTCTCAAGCACATCCTTTGG
Left flanking sequence: Indices 7570 -- 8069
TTGAGAACAGGCTCCTCAAGGACCATATCCGGCTCGGTCAGGCGGAGAGCTGCGAGGAAGCCATC
GCCAATGGCAGCTGGCGCCTCTGGCAGCGGCTCTTTGCTGTCGGCTGGGAGGACCGACGACCCCT
CTTCGAACTCCTCGTCGGACTCGATGAGCGCCGCGTGCCTGGCTGGAGGCGACGACGGCGGGGAC
GACGGTGGCTTGGCCTTCCTGTTGTTTTTGGCCTCCTCTCGCCGCTGTCTCAGCTGCGCCATCAA
CAAGTCATACACCCCCGGGTTGGTCTTCTCTGTCTTTTCAGGCCTTTCGGACTTTTTGGCTGCTT
TTTTAGGTGGCATTTCAGCTGGCATTTCAGCTGGTCGTTCAGCTGGCCTTTCTGGCCTTTCTGGC
TTTTCAGCTGGCCTTTCAGCCAGCTTCCCAGACTTTTTCGAGTCCTCAACCGGTGCAACCGTTAC
TTCTACTTTCTGATCAGGCTTTTCCACAGGCTCCTTCTCAACCTC
Right flanking sequence: Indices 8115 -- 8614
TTTATCGCCGTCCTCCGCAGTCTTCTCTGGTTCCTGCTCTTCCACCTCCATGACGTCATCGTCTT
CCTCGTCCTCCTCGCGAGCTTCCCCCTTGGGAACCGCTCCGTGGAGCCTCTGCAACACCCCAATC
AACTGGCGCCGAGAGCCCACCCGCAGTGCTGCAGGAAACACCCGTTTCATGTCCTGGCGCTTCGG
ATGGCGCCAGTAGCGCTCCACGCCCGCGGGATCACGGGCCCACGCTCTCACATTCAAAATTACGT
GGATACCGCAGTCGTTGAAGTTGTTTTGCTTGGGAACCAGCACGTTCTTCACCAAGATCATCGCC
TTTTCCACCTCCACCTGGTGTCGCTCGGCACAGTAGTCGATGATGAACAGCTTGAGCGGGTTCAG
GATGTTTTTGTGCTGCTGGGAAAGCGAGTCAAACACGAAGATCTCGGCCTTTTCTACGTTTAGCG
GGGTCTCCGTCTCGGTGTCAAACGACGAGCCAGCGTCTTTCGCCA
Found at i:8968 original size:15 final size:15
Alignment explanation
Indices: 8948--8999 Score: 104
Period size: 15 Copynumber: 3.5 Consensus size: 15
8938 GGGTCGGACG
8948 TGGCGTCTGCTGCGC
1 TGGCGTCTGCTGCGC
8963 TGGCGTCTGCTGCGC
1 TGGCGTCTGCTGCGC
8978 TGGCGTCTGCTGCGC
1 TGGCGTCTGCTGCGC
8993 TGGCGTC
1 TGGCGTC
9000 CGCGGTGTCG
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 37 1.00
ACGTcount: A:0.00, C:0.33, G:0.40, T:0.27
Consensus pattern (15 bp):
TGGCGTCTGCTGCGC
Left flanking sequence: Indices 8448 -- 8947
CTCCACCTGGTGTCGCTCGGCACAGTAGTCGATGATGAACAGCTTGAGCGGGTTCAGGATGTTTT
TGTGCTGCTGGGAAAGCGAGTCAAACACGAAGATCTCGGCCTTTTCTACGTTTAGCGGGGTCTCC
GTCTCGGTGTCAAACGACGAGCCAGCGTCTTTCGCCAGCTGTTGGCGCTTGGCCCGAGCCAAGAG
CCCGGGAAGCCCCCGGATCACACACCCGTACCAGTGCGAGTTCTCGTTGATAGGGATCACCACGC
TGTCGTAGGACATCACGTCGTCCATTTTCGCGAGCCAGCGGCGGACGTTGGCGTAGTGGTTTGCG
GACGACGTGAGTTTGCGGAAGAAGAACGAGTTGAACGCGTAGGTTTTGCCTGCGGACGCTGCGAG
GTCGAGCGACGGGGTGTGTGACGGCGTGGGTGACGGCGTCGAGTGGCTAGCCTGGGAAAGAGAGT
GCTCCGAGGGTAGAAAGGAGACGGAAGAAGGGTTGGGGTCGGACG
Right flanking sequence: Indices 9000 -- 9499
CGCGGTGTCGCTGGTTTCGCCCGAGCCAATGTTGATTGTGTCTCGCGTGGTGTCTACGGAGCTCT
CACGGGAGCCACTGGCTTCCAGCTCCTTTGGGCCTTCCGAAAGTGCGCCTTTCAAAAGTGCTTTC
TTACTCTCTTCCAGCCCGTTTCCACTCTCACCAAGCCCATTTCCACCTTCACCAAAGCCATTTCC
ACTCTCACTAAACCCATTTCCACCATCTACTAGCCCGTTTCCACCCTCACCAAGCCCAGTCTTCT
TCTCCAACCCCCCGTTTTTCGCATCCGCAAGCTCGTATTGCACAAAAAAGTCAATGATGGTATCG
TTCACCCAGTCGTTATTGTACAACGTCTTGAAGTCAGCAAAACCCACCTCGATGCTCGACGCTCC
AAACTGCGCCCGTAGCGGCGGGCTGAACAGCGCAGGGTCCTCGCGCGCCGTCTTCTTGAACTCCC
AGCTGTCGTCCTCGTGGTCCAAGTCCACCACCTGGTGGCGGGTGC
Found at i:9156 original size:21 final size:21
Alignment explanation
Indices: 9142--9252 Score: 104
Period size: 21 Copynumber: 5.3 Consensus size: 21
9132 ACTCTCTTCC
*
9142 AGCCCGTTTCCACTCTCACCA
1 AGCCCATTTCCACTCTCACCA
9163 AGCCCATTTCCAC-CTTCACCAA
1 AGCCCATTTCCACTC-TCACC-A
*
9185 AG-CCATTTCCACTCTCACTA
1 AGCCCATTTCCACTCTCACCA
* *
9205 AACCCATTTCCAC-CATCTA-CT
1 AGCCCATTTCCACTC-TC-ACCA
* *
9226 AGCCCGTTTCCACCCTCACCA
1 AGCCCATTTCCACTCTCACCA
9247 AGCCCA
1 AGCCCA
9253 GTCTTCTTCT
Statistics
Matches: 73, Mismatches: 9, Indels: 16
0.74 0.09 0.16
Matches are distributed among these distances:
20 5 0.07
21 62 0.85
22 6 0.08
ACGTcount: A:0.24, C:0.46, G:0.06, T:0.23
Consensus pattern (21 bp):
AGCCCATTTCCACTCTCACCA
Left flanking sequence: Indices 8642 -- 9141
GCCCGGGAAGCCCCCGGATCACACACCCGTACCAGTGCGAGTTCTCGTTGATAGGGATCACCACG
CTGTCGTAGGACATCACGTCGTCCATTTTCGCGAGCCAGCGGCGGACGTTGGCGTAGTGGTTTGC
GGACGACGTGAGTTTGCGGAAGAAGAACGAGTTGAACGCGTAGGTTTTGCCTGCGGACGCTGCGA
GGTCGAGCGACGGGGTGTGTGACGGCGTGGGTGACGGCGTCGAGTGGCTAGCCTGGGAAAGAGAG
TGCTCCGAGGGTAGAAAGGAGACGGAAGAAGGGTTGGGGTCGGACGTGGCGTCTGCTGCGCTGGC
GTCTGCTGCGCTGGCGTCTGCTGCGCTGGCGTCCGCGGTGTCGCTGGTTTCGCCCGAGCCAATGT
TGATTGTGTCTCGCGTGGTGTCTACGGAGCTCTCACGGGAGCCACTGGCTTCCAGCTCCTTTGGG
CCTTCCGAAAGTGCGCCTTTCAAAAGTGCTTTCTTACTCTCTTCC
Right flanking sequence: Indices 9253 -- 9752
GTCTTCTTCTCCAACCCCCCGTTTTTCGCATCCGCAAGCTCGTATTGCACAAAAAAGTCAATGAT
GGTATCGTTCACCCAGTCGTTATTGTACAACGTCTTGAAGTCAGCAAAACCCACCTCGATGCTCG
ACGCTCCAAACTGCGCCCGTAGCGGCGGGCTGAACAGCGCAGGGTCCTCGCGCGCCGTCTTCTTG
AACTCCCAGCTGTCGTCCTCGTGGTCCAAGTCCACCACCTGGTGGCGGGTGCTCGTCAGAAGCCG
CAGCGACCGGCGCGTGCCCTCGGGCGCGGTTTCCTTGGCTCGGCGGGCCATGGCTGCCCGCTTGA
TCTGCCGCTTGAGCCCCGCGATCGTCTCCGGGGTCACAAGCAGCTCGGTGTCCACTTTCAGGCTC
CCCCGCCACTCCGGGTGGGTTCGGAAGTGCTCGCGGAGCGGGGCGTCCAGCGCGTTGTGGTGGAT
GAGCGCGTAGCGGTGCTCGGGCTCGTTCTGGAGCTCGATCACCAC
Found at i:9236 original size:42 final size:43
Alignment explanation
Indices: 9142--9252 Score: 129
Period size: 42 Copynumber: 2.6 Consensus size: 43
9132 ACTCTCTTCC
* *
9142 AGCCCGTTTCCACTCTCACCAAGCCCATTTCCACCTTCACCAA
1 AGCCCGTTTCCACTCTCACCAAACCCATTTCCACCATCACCAA
* * *
9185 AG-CCATTTCCACTCTCACTAAACCCATTTCCACCATCTA-C-T
1 AGCCCGTTTCCACTCTCACCAAACCCATTTCCACCATC-ACCAA
* *
9226 AGCCCGTTTCCACCCTCACCAAGCCCA
1 AGCCCGTTTCCACTCTCACCAAACCCA
9253 GTCTTCTTCT
Statistics
Matches: 57, Mismatches: 9, Indels: 5
0.80 0.13 0.07
Matches are distributed among these distances:
41 2 0.04
42 52 0.91
43 3 0.05
ACGTcount: A:0.24, C:0.46, G:0.06, T:0.23
Consensus pattern (43 bp):
AGCCCGTTTCCACTCTCACCAAACCCATTTCCACCATCACCAA
Left flanking sequence: Indices 8642 -- 9141
GCCCGGGAAGCCCCCGGATCACACACCCGTACCAGTGCGAGTTCTCGTTGATAGGGATCACCACG
CTGTCGTAGGACATCACGTCGTCCATTTTCGCGAGCCAGCGGCGGACGTTGGCGTAGTGGTTTGC
GGACGACGTGAGTTTGCGGAAGAAGAACGAGTTGAACGCGTAGGTTTTGCCTGCGGACGCTGCGA
GGTCGAGCGACGGGGTGTGTGACGGCGTGGGTGACGGCGTCGAGTGGCTAGCCTGGGAAAGAGAG
TGCTCCGAGGGTAGAAAGGAGACGGAAGAAGGGTTGGGGTCGGACGTGGCGTCTGCTGCGCTGGC
GTCTGCTGCGCTGGCGTCTGCTGCGCTGGCGTCCGCGGTGTCGCTGGTTTCGCCCGAGCCAATGT
TGATTGTGTCTCGCGTGGTGTCTACGGAGCTCTCACGGGAGCCACTGGCTTCCAGCTCCTTTGGG
CCTTCCGAAAGTGCGCCTTTCAAAAGTGCTTTCTTACTCTCTTCC
Right flanking sequence: Indices 9253 -- 9752
GTCTTCTTCTCCAACCCCCCGTTTTTCGCATCCGCAAGCTCGTATTGCACAAAAAAGTCAATGAT
GGTATCGTTCACCCAGTCGTTATTGTACAACGTCTTGAAGTCAGCAAAACCCACCTCGATGCTCG
ACGCTCCAAACTGCGCCCGTAGCGGCGGGCTGAACAGCGCAGGGTCCTCGCGCGCCGTCTTCTTG
AACTCCCAGCTGTCGTCCTCGTGGTCCAAGTCCACCACCTGGTGGCGGGTGCTCGTCAGAAGCCG
CAGCGACCGGCGCGTGCCCTCGGGCGCGGTTTCCTTGGCTCGGCGGGCCATGGCTGCCCGCTTGA
TCTGCCGCTTGAGCCCCGCGATCGTCTCCGGGGTCACAAGCAGCTCGGTGTCCACTTTCAGGCTC
CCCCGCCACTCCGGGTGGGTTCGGAAGTGCTCGCGGAGCGGGGCGTCCAGCGCGTTGTGGTGGAT
GAGCGCGTAGCGGTGCTCGGGCTCGTTCTGGAGCTCGATCACCAC
Found at i:10098 original size:30 final size:30
Alignment explanation
Indices: 10064--10120 Score: 96
Period size: 30 Copynumber: 1.9 Consensus size: 30
10054 GCCTTCAGTG
10064 GGTCAGATTTGGCGGCAGAATGGTCAGAAT
1 GGTCAGATTTGGCGGCAGAATGGTCAGAAT
**
10094 GGTCAGATTTGGCGTTAGAATGGTCAG
1 GGTCAGATTTGGCGGCAGAATGGTCAG
10121 CTTTGGTGTC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.25, C:0.12, G:0.37, T:0.26
Consensus pattern (30 bp):
GGTCAGATTTGGCGGCAGAATGGTCAGAAT
Left flanking sequence: Indices 9564 -- 10063
GGCTGCCCGCTTGATCTGCCGCTTGAGCCCCGCGATCGTCTCCGGGGTCACAAGCAGCTCGGTGT
CCACTTTCAGGCTCCCCCGCCACTCCGGGTGGGTTCGGAAGTGCTCGCGGAGCGGGGCGTCCAGC
GCGTTGTGGTGGATGAGCGCGTAGCGGTGCTCGGGCTCGTTCTGGAGCTCGATCACCACCTCGTT
GTCGCCAAAGCTCACCAGCTCGATGTGGCGGTCGCGGTGGAAAATGTAGGGCAGCACGGCGTCGT
CGCGGGCGATGTAGAGGTAGGGGGCGGTGGCGAGGCAGAGCAGGAGGGGCAGCTGGGCCAGGGCG
TTGAGCTTCTCGCGGTGGCGGAACCCCAGCACGTAGAACTGGTAGTCGCACACCAACGGGCCGTC
CACGGGGTCGCCCGCGATGTCCACCTTGGGCTCGGACCGCTTGGGACGGGTTCGCTGGCCGGCTT
TGGAGGCCCGGTCAAGCTGGTCCGCAATGGAGCCTGCCTTCAGTG
Right flanking sequence: Indices 10121 -- 10620
CTTTGGTGTCAGAATAGGGGTCAGCTTTGGCTCCGTTGGACGGCGATCCCGACCGCTGGAGGGCC
AAGTCGGCCGATGTGGGACCAGAAAACGGACCTGCGCTAATGGTTATGTGTCTGTCAGGCAGCCG
AGCGTCCTTTCTGGGGCGTCCAGGCCCGCTCCGGATCCGGGCCCGTGCCTGGTCGTCGAGGATGC
GTTTGCGGTCGGGCTTCGCAAGGGGCACGCCCCGGGCCTCGTCCAACCGGTTTAACTCGCTTACA
ATGCGTCTCAGCCGCTCCACAGCGGTCTCCGTCAGTGCTTTCGGGTCCTCGACGGTGATCTTCAG
GGCCGTGAGCTTGTTTGTGGGCTGGGGGAGGCCCAGCGCCACTTTGCGGCGGCCCGGCGGCTGGA
TCAGGCCTAGCCCGCCCAGGACCTTGTCTTTTAGCGAGCTAGACATGCTCTGGGGGGTGGTTGGC
GGGGATGGGGAGGTGGTGGTGGAGCTGATGGTGGTGAGGGATTGA
Found at i:10113 original size:21 final size:21
Alignment explanation
Indices: 10086--10135 Score: 73
Period size: 21 Copynumber: 2.4 Consensus size: 21
10076 CGGCAGAATG
10086 GTCAGAATGGTCAGATTTGGC
1 GTCAGAATGGTCAGATTTGGC
* * *
10107 GTTAGAATGGTCAGCTTTGGT
1 GTCAGAATGGTCAGATTTGGC
10128 GTCAGAAT
1 GTCAGAAT
10136 AGGGGTCAGC
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.24, C:0.12, G:0.32, T:0.32
Consensus pattern (21 bp):
GTCAGAATGGTCAGATTTGGC
Left flanking sequence: Indices 9586 -- 10085
TTGAGCCCCGCGATCGTCTCCGGGGTCACAAGCAGCTCGGTGTCCACTTTCAGGCTCCCCCGCCA
CTCCGGGTGGGTTCGGAAGTGCTCGCGGAGCGGGGCGTCCAGCGCGTTGTGGTGGATGAGCGCGT
AGCGGTGCTCGGGCTCGTTCTGGAGCTCGATCACCACCTCGTTGTCGCCAAAGCTCACCAGCTCG
ATGTGGCGGTCGCGGTGGAAAATGTAGGGCAGCACGGCGTCGTCGCGGGCGATGTAGAGGTAGGG
GGCGGTGGCGAGGCAGAGCAGGAGGGGCAGCTGGGCCAGGGCGTTGAGCTTCTCGCGGTGGCGGA
ACCCCAGCACGTAGAACTGGTAGTCGCACACCAACGGGCCGTCCACGGGGTCGCCCGCGATGTCC
ACCTTGGGCTCGGACCGCTTGGGACGGGTTCGCTGGCCGGCTTTGGAGGCCCGGTCAAGCTGGTC
CGCAATGGAGCCTGCCTTCAGTGGGTCAGATTTGGCGGCAGAATG
Right flanking sequence: Indices 10136 -- 10635
AGGGGTCAGCTTTGGCTCCGTTGGACGGCGATCCCGACCGCTGGAGGGCCAAGTCGGCCGATGTG
GGACCAGAAAACGGACCTGCGCTAATGGTTATGTGTCTGTCAGGCAGCCGAGCGTCCTTTCTGGG
GCGTCCAGGCCCGCTCCGGATCCGGGCCCGTGCCTGGTCGTCGAGGATGCGTTTGCGGTCGGGCT
TCGCAAGGGGCACGCCCCGGGCCTCGTCCAACCGGTTTAACTCGCTTACAATGCGTCTCAGCCGC
TCCACAGCGGTCTCCGTCAGTGCTTTCGGGTCCTCGACGGTGATCTTCAGGGCCGTGAGCTTGTT
TGTGGGCTGGGGGAGGCCCAGCGCCACTTTGCGGCGGCCCGGCGGCTGGATCAGGCCTAGCCCGC
CCAGGACCTTGTCTTTTAGCGAGCTAGACATGCTCTGGGGGGTGGTTGGCGGGGATGGGGAGGTG
GTGGTGGAGCTGATGGTGGTGAGGGATTGATCTGGGTGTGTGCAG
Found at i:10683 original size:17 final size:18
Alignment explanation
Indices: 10652--10702 Score: 70
Period size: 16 Copynumber: 2.9 Consensus size: 18
10642 GAAACGATGC
*
10652 AGACGGTGAAGCAGGGGG
1 AGACAGTGAAGCAGGGGG
10670 AGACAGTG-AGCA-GGGG
1 AGACAGTGAAGCAGGGGG
*
10686 AGACGGTGAAGCAGGGG
1 AGACAGTGAAGCAGGGG
10703 TGTTCTGAGG
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
16 11 0.38
17 8 0.28
18 10 0.34
ACGTcount: A:0.29, C:0.12, G:0.53, T:0.06
Consensus pattern (18 bp):
AGACAGTGAAGCAGGGGG
Left flanking sequence: Indices 10152 -- 10651
TCCGTTGGACGGCGATCCCGACCGCTGGAGGGCCAAGTCGGCCGATGTGGGACCAGAAAACGGAC
CTGCGCTAATGGTTATGTGTCTGTCAGGCAGCCGAGCGTCCTTTCTGGGGCGTCCAGGCCCGCTC
CGGATCCGGGCCCGTGCCTGGTCGTCGAGGATGCGTTTGCGGTCGGGCTTCGCAAGGGGCACGCC
CCGGGCCTCGTCCAACCGGTTTAACTCGCTTACAATGCGTCTCAGCCGCTCCACAGCGGTCTCCG
TCAGTGCTTTCGGGTCCTCGACGGTGATCTTCAGGGCCGTGAGCTTGTTTGTGGGCTGGGGGAGG
CCCAGCGCCACTTTGCGGCGGCCCGGCGGCTGGATCAGGCCTAGCCCGCCCAGGACCTTGTCTTT
TAGCGAGCTAGACATGCTCTGGGGGGTGGTTGGCGGGGATGGGGAGGTGGTGGTGGAGCTGATGG
TGGTGAGGGATTGATCTGGGTGTGTGCAGGAGCGAGAAACGATGC
Right flanking sequence: Indices 10703 -- 11202
TGTTCTGAGGTGGTGTGGGTGGTGGTGAGAATATGGAGGTGGTTGGGCTAGGACTCTTTGTGGCT
TTGTTCTTTTGGGCGTTCTGGAGCGGGGTTTTGTAGGTTCTGGAGAGAGCGATGGAGATATCGTG
GTGGGACGCGAGTAGGACGCGAGTAGGACGACTACCAGCCGGAGAGGACAGGAAGGTGGTATAGA
AGGGTGAAGATGGGTGGAGATGGTGAAAATGGGCGAGAAAAGGATAAGATGTGTTGAACTAGCGG
GGTTCGAATAATGCGAATGGTGTTGAGACTGAGTGGGGAATAATGTTGGAGTGGAAAGGCTGTAT
GCACTTCAGTGGAACAAAGGTGTACTGTAACGTAGTAGGGCTGGAGAGCTAGCCAGGTAATAGGG
GACTGTGCTAGCCAGAGCGTGGCAACGATAATTTCTTACTTGTAAGGATGTAACAGAGGATCTAA
AGTGTCCGTGCTCTATCTTCAATCCACGCTACATCAATCATTGAC
Found at i:10687 original size:16 final size:17
Alignment explanation
Indices: 10652--10702 Score: 68
Period size: 17 Copynumber: 3.0 Consensus size: 17
10642 GAAACGATGC
*
10652 AGACGGTGAAGCAGGGGG
1 AGACAGTGAAGCA-GGGG
10670 AGACAGTG-AGCAGGGG
1 AGACAGTGAAGCAGGGG
*
10686 AGACGGTGAAGCAGGGG
1 AGACAGTGAAGCAGGGG
10703 TGTTCTGAGG
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
16 11 0.37
17 12 0.40
18 7 0.23
ACGTcount: A:0.29, C:0.12, G:0.53, T:0.06
Consensus pattern (17 bp):
AGACAGTGAAGCAGGGG
Left flanking sequence: Indices 10152 -- 10651
TCCGTTGGACGGCGATCCCGACCGCTGGAGGGCCAAGTCGGCCGATGTGGGACCAGAAAACGGAC
CTGCGCTAATGGTTATGTGTCTGTCAGGCAGCCGAGCGTCCTTTCTGGGGCGTCCAGGCCCGCTC
CGGATCCGGGCCCGTGCCTGGTCGTCGAGGATGCGTTTGCGGTCGGGCTTCGCAAGGGGCACGCC
CCGGGCCTCGTCCAACCGGTTTAACTCGCTTACAATGCGTCTCAGCCGCTCCACAGCGGTCTCCG
TCAGTGCTTTCGGGTCCTCGACGGTGATCTTCAGGGCCGTGAGCTTGTTTGTGGGCTGGGGGAGG
CCCAGCGCCACTTTGCGGCGGCCCGGCGGCTGGATCAGGCCTAGCCCGCCCAGGACCTTGTCTTT
TAGCGAGCTAGACATGCTCTGGGGGGTGGTTGGCGGGGATGGGGAGGTGGTGGTGGAGCTGATGG
TGGTGAGGGATTGATCTGGGTGTGTGCAGGAGCGAGAAACGATGC
Right flanking sequence: Indices 10703 -- 11202
TGTTCTGAGGTGGTGTGGGTGGTGGTGAGAATATGGAGGTGGTTGGGCTAGGACTCTTTGTGGCT
TTGTTCTTTTGGGCGTTCTGGAGCGGGGTTTTGTAGGTTCTGGAGAGAGCGATGGAGATATCGTG
GTGGGACGCGAGTAGGACGCGAGTAGGACGACTACCAGCCGGAGAGGACAGGAAGGTGGTATAGA
AGGGTGAAGATGGGTGGAGATGGTGAAAATGGGCGAGAAAAGGATAAGATGTGTTGAACTAGCGG
GGTTCGAATAATGCGAATGGTGTTGAGACTGAGTGGGGAATAATGTTGGAGTGGAAAGGCTGTAT
GCACTTCAGTGGAACAAAGGTGTACTGTAACGTAGTAGGGCTGGAGAGCTAGCCAGGTAATAGGG
GACTGTGCTAGCCAGAGCGTGGCAACGATAATTTCTTACTTGTAAGGATGTAACAGAGGATCTAA
AGTGTCCGTGCTCTATCTTCAATCCACGCTACATCAATCATTGAC
Found at i:10852 original size:11 final size:11
Alignment explanation
Indices: 10836--10862 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
10826 TATCGTGGTG
10836 GGACGCGAGTA
1 GGACGCGAGTA
10847 GGACGCGAGTA
1 GGACGCGAGTA
10858 GGACG
1 GGACG
10863 ACTACCAGCC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.26, C:0.19, G:0.48, T:0.07
Consensus pattern (11 bp):
GGACGCGAGTA
Left flanking sequence: Indices 10336 -- 10835
AGGGGCACGCCCCGGGCCTCGTCCAACCGGTTTAACTCGCTTACAATGCGTCTCAGCCGCTCCAC
AGCGGTCTCCGTCAGTGCTTTCGGGTCCTCGACGGTGATCTTCAGGGCCGTGAGCTTGTTTGTGG
GCTGGGGGAGGCCCAGCGCCACTTTGCGGCGGCCCGGCGGCTGGATCAGGCCTAGCCCGCCCAGG
ACCTTGTCTTTTAGCGAGCTAGACATGCTCTGGGGGGTGGTTGGCGGGGATGGGGAGGTGGTGGT
GGAGCTGATGGTGGTGAGGGATTGATCTGGGTGTGTGCAGGAGCGAGAAACGATGCAGACGGTGA
AGCAGGGGGAGACAGTGAGCAGGGGAGACGGTGAAGCAGGGGTGTTCTGAGGTGGTGTGGGTGGT
GGTGAGAATATGGAGGTGGTTGGGCTAGGACTCTTTGTGGCTTTGTTCTTTTGGGCGTTCTGGAG
CGGGGTTTTGTAGGTTCTGGAGAGAGCGATGGAGATATCGTGGTG
Right flanking sequence: Indices 10863 -- 11362
ACTACCAGCCGGAGAGGACAGGAAGGTGGTATAGAAGGGTGAAGATGGGTGGAGATGGTGAAAAT
GGGCGAGAAAAGGATAAGATGTGTTGAACTAGCGGGGTTCGAATAATGCGAATGGTGTTGAGACT
GAGTGGGGAATAATGTTGGAGTGGAAAGGCTGTATGCACTTCAGTGGAACAAAGGTGTACTGTAA
CGTAGTAGGGCTGGAGAGCTAGCCAGGTAATAGGGGACTGTGCTAGCCAGAGCGTGGCAACGATA
ATTTCTTACTTGTAAGGATGTAACAGAGGATCTAAAGTGTCCGTGCTCTATCTTCAATCCACGCT
ACATCAATCATTGACAGGTGCTACTATGCCACTAGCCAAAAACCTAACCTACTCCTTATCATTCA
CGTGTCTCGCATCCTGTCATGTCACCGTATCTGTCCGTTGTATCAGGTAAGCGACCAACTAACAA
TGGACAAAGGAACGAGCAGTCACGCCGCGTGGTAGAAACACAGCC
Found at i:13119 original size:17 final size:18
Alignment explanation
Indices: 13069--13116 Score: 78
Period size: 18 Copynumber: 2.7 Consensus size: 18
13059 GTTCGATGTG
*
13069 TGCTTAGGTTTTTCCAGT
1 TGCTCAGGTTTTTCCAGT
*
13087 TGTTCAGGTTTTTCCAGT
1 TGCTCAGGTTTTTCCAGT
13105 TGCTCAGGTTTT
1 TGCTCAGGTTTT
13117 CCAATCCACC
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 27 1.00
ACGTcount: A:0.10, C:0.17, G:0.23, T:0.50
Consensus pattern (18 bp):
TGCTCAGGTTTTTCCAGT
Left flanking sequence: Indices 12569 -- 13068
TTACGACCTGGTTTCTTTTGTCACCAAGAGCGTGATCCCGTTGGCGGGTGGTGATCAACCATGTG
GGTTTACGAAAGCCGAGAAACGAGGTGCGCAAGGGCCCAGCAAAGAAGACGGGAGTATTCAGCGT
TGAATTGGGTCATGTTTGCTGACACATCTCGTTTCCACGACGTATCTCGGACCCAGGTCACATCT
CGTATTTCGTTAATTACTCGCAGCGTCGAAGTATTTCAGTGTATAACAATGTACAGTCATCAGGC
ATCGTATTGGTTTCCGAGCTAGAGTAACCACGGGAAGCCCCATGACGTGAAACAATGGCGACAGC
CAAGCAATGGTTGTACAGCATGGTTTGAAAAGAGTAGGGAGTAATCTTGGAACGTGGCCGAGAAT
ATGGAGAAATGTGACAGATAACAAAGAACAATTTGGGTGGTATTGTTCGCAGTCAATTGTAATTA
AGTGTTGGAGGGCACGCACGGTCCAATAACGATAAGTTCGATGTG
Right flanking sequence: Indices 13117 -- 13616
CCAATCCACCGAGCTCGTAGATCATATCCATTTGGATGGTCCGCATTCTCTCCCACCGATTGATT
TCCCTTTCATAGTGCTTAGTGGCTGTTCGACCTAATTCACAACGCACCTTCAAGAAGTCTCCCTT
ATCCACCACATCCCCCATATGGAATCGTATGCACTCTACGCTTAACCACCAACCCTTCTTATATC
TATCGTTCATTATGCTCTATTAGTTCAGATGATCACACAGCACCCGTCTTTTTCTTTCTCCAGCG
TCACCAACAACGACGTCCGCGTGGCAAACTCAAAGATATCGTCCACGCCCTCGCCGGTGAGACTC
AGCAGCTCCATATACCTCTTGGCGTCAATCAGGGTCGCAGCAGCCTCGCCCTGGTGCGGCTGGAC
AAACCGCGAGCTCTGGCTCGTACGCAAGTCCTTTTTGAGCCCAACCAACACGTAGGGTGTGGCTG
GACAGTACTTTTTGACCTCCTGGACCCACTTGGTGCAGGCGTTGT
Found at i:14018 original size:11 final size:11
Alignment explanation
Indices: 13968--14026 Score: 91
Period size: 11 Copynumber: 5.4 Consensus size: 11
13958 GTAGTTGTGT
*
13968 GGTGCTAGTGA
1 GGTGCTCGTGA
*
13979 GGTGCTAGTGA
1 GGTGCTCGTGA
13990 GGTGCTCGTGA
1 GGTGCTCGTGA
14001 GGTGCTCGTGA
1 GGTGCTCGTGA
*
14012 GGTGCTCGTCA
1 GGTGCTCGTGA
14023 GGTG
1 GGTG
14027 TTTGGTGTCA
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
11 46 1.00
ACGTcount: A:0.12, C:0.15, G:0.46, T:0.27
Consensus pattern (11 bp):
GGTGCTCGTGA
Left flanking sequence: Indices 13468 -- 13967
AATCAGGGTCGCAGCAGCCTCGCCCTGGTGCGGCTGGACAAACCGCGAGCTCTGGCTCGTACGCA
AGTCCTTTTTGAGCCCAACCAACACGTAGGGTGTGGCTGGACAGTACTTTTTGACCTCCTGGACC
CACTTGGTGCAGGCGTTGTCCAACAGATCGGGCACATCGAGGGCAAACGCAATGAGGATGACGTG
GGAGTTGGCGTAGCTCAAGGGACGCAACCGCTCGTACTCTTCCTGGCCCGCGGTGTCCCAGAGCG
CGAGCCGTACGGGCTTTCCGTCGACCCGGCAATCGGTGACGTAGTTCTCAAACACCGTGGGGTGG
TACTCCGTGGGGAACTCTCCAAGGGTAAACACGTAAAGAAGCGAGGTTTTGCCGCAGGCTCCGTC
GCCTACAATCACGAGCTTGCGCTTTACGGCGTCGTCCGACATGGAATGGTGGTATTGGATGGTTG
AGGTGGAATCGGAGGGTGGTTCCGACAATGGGTACGTAGTTGTGT
Right flanking sequence: Indices 14027 -- 14526
TTTGGTGTCACCACGTATGTTCAACCTAGCGGTGGTACAGCAAGACCTGGGGGTGTGTCGCTGGC
GGAGACCCGGTTGCCAACCCTGGGTAACGGGATGGTGGAGCGAGTGGCTCTGGAGGGCCCTAGTG
GACGCGGGTGGAGTGGGGTGCGTTGATGTGCCCAGACTCCGGAGAGTTGTGGTGCGTGCGCTTGG
GGACTGGGGTACAGCTGGAACAGGACCTCCGGATGGCGTTCAGGGGTCAACAGGAACAGCTGGGG
ACAGCGCTGGGGTTTCTGGCAACGAGCACGGGGGTTTGCACTAGCAATTCGCCCGCAATTTCTGG
TGGTTTGTGTGTGAAACGACAATGGCTGCACACAACGATCTGCATGGACACAGAGGTGCCGACCC
TACGACGGACAGAAAAAAGGTGGGGGCAGCGCAGGGAAGGAGCAGAGCGTTGAGAGAAACGGGTG
GAAAGAACAACAATGGGGCTTGGGTGGTGGGCCGTGTTTTCAGTA
Found at i:15183 original size:20 final size:20
Alignment explanation
Indices: 15155--15197 Score: 77
Period size: 20 Copynumber: 2.1 Consensus size: 20
15145 GCCATTCTCG
15155 TGCTATTTGCACTCTACACA
1 TGCTATTTGCACTCTACACA
*
15175 TGCTGTTTGCACTCTACACA
1 TGCTATTTGCACTCTACACA
15195 TGC
1 TGC
15198 CTGGTTACCG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.21, C:0.30, G:0.14, T:0.35
Consensus pattern (20 bp):
TGCTATTTGCACTCTACACA
Left flanking sequence: Indices 14655 -- 15154
CCGCGTGATGAGAGGGCTAAAGGTGGTGTGGGTAGTGTGGTTGAGCAGTGTGGGCGTGTATTTGG
TCCTAAAAGGGACTTCTGGCCGTGGTCATCTGGTGGGTGGCCTATTGTCTCGTGACACAAAGCGC
CCATTGGTGGGCTAGGGACAATCTGGGCCGATGTAAGGGGGATGCGGACGAAGAGGAGCCGGAAG
GAGAAGGAAGCGGGTGAAGGGTAGTGTGCGAGGTGGAATTGTGGCGCTGTAGCCGAAGGAGGCGT
GGTGGGTGCTAATGTGCTACCAGGATGGAGTGCACTACACAGAGCCCGGGAAAGACTTCGTAGGG
TGTGCCAGTGCACACTGCCAGCGCACACTGACAGCCATGTCAAACCCCGGTGGGCTCTGACTGGG
CCAAGACCAAGAAATCGTCGCTTAGGTGGGGGTTCTCAACCAACCGAGAACAATAGACGGGGCTT
AGACCGGCTACAGATACGTTGGGAGGGCCTCAATGGCCATTCTCG
Right flanking sequence: Indices 15198 -- 15697
CTGGTTACCGCTGATAAACCCGTTCTGACGTCACTGTGTGGCTGGTTGCTCTTGTTCGCTTTGTG
CCAGCGATAACCGCCGTCGTATCTGCGCAGGTTTTGTGCCAGTAGCGGATGTCTGCTTGTGTCTG
CTTAGATCCGATGAGACACCGTTACGAGTGAGGCGATGCTGTGGGGCTGGCACGACGACAATGGT
GGTAGAGAGAATAAGAGGGAATAAGGTTTGTTAGACTACCCAATACGGAATTAAGGTGGTGGTAG
TAAAAGGTGGTGGCAATGTGGGTGGTTGTATTGGCGACACTGGCTGTTGTTGCTATGGGCATGTC
CGTGGAAGAGGGTGTTGATAGCTACTTCTATGGGAGAGGTTTCGAAGCTGGAGTAGGCAGTTGTA
TTGATGGTAGTAGAGATTGGGGACGTGGAAAAGAGGTTCGAGGACGGAAAAGTCTAGGAACCGAT
GAGATCATAGGGCTACCTCCCACGGTTCCGGTAATTATAACGGGT
Found at i:16224 original size:12 final size:12
Alignment explanation
Indices: 16207--16266 Score: 111
Period size: 12 Copynumber: 5.0 Consensus size: 12
16197 ATTGTTAAAC
16207 GTCCTGGCTTTT
1 GTCCTGGCTTTT
16219 GTCCTGGCTTTT
1 GTCCTGGCTTTT
16231 GTCCTGGCTTTT
1 GTCCTGGCTTTT
16243 GTCCTGGCTTTT
1 GTCCTGGCTTTT
*
16255 GTCCTGACTTTT
1 GTCCTGGCTTTT
16267 CCTGACTTTT
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
12 47 1.00
ACGTcount: A:0.02, C:0.25, G:0.23, T:0.50
Consensus pattern (12 bp):
GTCCTGGCTTTT
Left flanking sequence: Indices 15707 -- 16206
ACGTGACCGAAGAGAGATTTGGAAAGGCTTCATTAGCGATCTAAAAAGCGAAACAAAACATGGGG
CCGTGCATGACTTTCAAAGCGGTATCTCCGAACGGGCTTCACAGTGGGAAGACAACCTCAATTGC
GATGGGAGATGTTGGTTCGTGTGGAGTGTAGTTTGAAATCACAAAAACTGTGCCATTGAGCCTAG
TCCAGGGTTTCACACCCCCATTCGACGATAGAGGCCAGCTGCAACATGCGTCACCTAAACAGTTT
AGACGGCTCGTCCGCGACTACGCTATTAAAAGTGCTAGAAAATAGACATGTCTACATTGATAAAA
ACCAGGGGTACTTATTTGTTTTGATACAGAGGTCAAAGATTTTAAAAGACACCGTTCATCATACA
TGCTCGCTTCAAGTGTAAAAAATAACCCAAATAGGCAATTGTTCAGGCCGTGTATACAATGAAAT
CCAAAGAAAAGCATGGTCATTCTCTACAAAATGACATTGTTAAAC
Right flanking sequence: Indices 16267 -- 16766
CCTGACTTTTTCTGACTCAGTGTACCACATTTTCGTACTCACCCGCATATTGACACCTTCGGTGC
ATACTGGCCCTGCACCACCAAATACAAGTGTATAAAACTACTTCAGCTCATTAATTATTGTTGAT
TACCACCCCGACTCATTGATTATTTTTGATCGCCCCTCCTTTAGTCTCCTTACGCCTCTTACGTC
TCCACCCGTCTCTTACGTCCCCTTACTCTTACGTCCATATCATTACACACCTAGTTCCACAACGA
CCGGGTTCCGTACTGTCCCAAAAGGTCCGGCTAGGCAAACTGCGGCAGCAGCGCAAACGGCACCT
GGCTGATCTGGCCCGGAGCAGGGTTCCCCAGCAGCGGCAGCACCTTGACATGGGTCACCGTGCCC
ACGTCGTCGTAAATAATGTCGAACGTGTAGTGGTGGGACGTCCGGATCAGCGTCAAGAACTGCCC
GAGGGTGAGCAGAGCACCCACAAGCGTCCGCACCTGGGCAAAGAG
Found at i:16464 original size:19 final size:19
Alignment explanation
Indices: 16440--16487 Score: 51
Period size: 19 Copynumber: 2.5 Consensus size: 19
16430 CCCTCCTTTA
16440 GTCTCCTTACGCCTCTTAC
1 GTCTCCTTACGCCTCTTAC
*** *
16459 GTCTCCACCCGTCTCTTAC
1 GTCTCCTTACGCCTCTTAC
*
16478 GTCCCCTTAC
1 GTCTCCTTAC
16488 TCTTACGTCC
Statistics
Matches: 21, Mismatches: 8, Indels: 0
0.72 0.28 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.10, C:0.46, G:0.10, T:0.33
Consensus pattern (19 bp):
GTCTCCTTACGCCTCTTAC
Left flanking sequence: Indices 15940 -- 16439
CTGCAACATGCGTCACCTAAACAGTTTAGACGGCTCGTCCGCGACTACGCTATTAAAAGTGCTAG
AAAATAGACATGTCTACATTGATAAAAACCAGGGGTACTTATTTGTTTTGATACAGAGGTCAAAG
ATTTTAAAAGACACCGTTCATCATACATGCTCGCTTCAAGTGTAAAAAATAACCCAAATAGGCAA
TTGTTCAGGCCGTGTATACAATGAAATCCAAAGAAAAGCATGGTCATTCTCTACAAAATGACATT
GTTAAACGTCCTGGCTTTTGTCCTGGCTTTTGTCCTGGCTTTTGTCCTGGCTTTTGTCCTGACTT
TTCCTGACTTTTTCTGACTCAGTGTACCACATTTTCGTACTCACCCGCATATTGACACCTTCGGT
GCATACTGGCCCTGCACCACCAAATACAAGTGTATAAAACTACTTCAGCTCATTAATTATTGTTG
ATTACCACCCCGACTCATTGATTATTTTTGATCGCCCCTCCTTTA
Right flanking sequence: Indices 16488 -- 16987
TCTTACGTCCATATCATTACACACCTAGTTCCACAACGACCGGGTTCCGTACTGTCCCAAAAGGT
CCGGCTAGGCAAACTGCGGCAGCAGCGCAAACGGCACCTGGCTGATCTGGCCCGGAGCAGGGTTC
CCCAGCAGCGGCAGCACCTTGACATGGGTCACCGTGCCCACGTCGTCGTAAATAATGTCGAACGT
GTAGTGGTGGGACGTCCGGATCAGCGTCAAGAACTGCCCGAGGGTGAGCAGAGCACCCACAAGCG
TCCGCACCTGGGCAAAGAGCTTCAGCACGGGGGCCACGCCAAACTCGAGCGCGCCCTGCTGCTGC
AACTGGTGGTAGGCGTTGTAGGTGGCCAACTGGATGACGTCGGCGTCGCCGCCGGCCACCAGCAG
CACCATGGGCGACGACGAGTTGAGCGAGGCGAGCAGGGGCTGGGGCTGGGTCTGGGACGGTTGAG
ACTGGCCAAGGGTCTGAGACTGGCCAAGGGTCTGAGACTGGCCGA
Found at i:17001 original size:21 final size:18
Alignment explanation
Indices: 16939--16985 Score: 94
Period size: 18 Copynumber: 2.6 Consensus size: 18
16929 CTGGGACGGT
16939 TGAGACTGGCCAAGGGTC
1 TGAGACTGGCCAAGGGTC
16957 TGAGACTGGCCAAGGGTC
1 TGAGACTGGCCAAGGGTC
16975 TGAGACTGGCC
1 TGAGACTGGCC
16986 GAGCCCGGTC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 29 1.00
ACGTcount: A:0.21, C:0.23, G:0.38, T:0.17
Consensus pattern (18 bp):
TGAGACTGGCCAAGGGTC
Left flanking sequence: Indices 16439 -- 16938
AGTCTCCTTACGCCTCTTACGTCTCCACCCGTCTCTTACGTCCCCTTACTCTTACGTCCATATCA
TTACACACCTAGTTCCACAACGACCGGGTTCCGTACTGTCCCAAAAGGTCCGGCTAGGCAAACTG
CGGCAGCAGCGCAAACGGCACCTGGCTGATCTGGCCCGGAGCAGGGTTCCCCAGCAGCGGCAGCA
CCTTGACATGGGTCACCGTGCCCACGTCGTCGTAAATAATGTCGAACGTGTAGTGGTGGGACGTC
CGGATCAGCGTCAAGAACTGCCCGAGGGTGAGCAGAGCACCCACAAGCGTCCGCACCTGGGCAAA
GAGCTTCAGCACGGGGGCCACGCCAAACTCGAGCGCGCCCTGCTGCTGCAACTGGTGGTAGGCGT
TGTAGGTGGCCAACTGGATGACGTCGGCGTCGCCGCCGGCCACCAGCAGCACCATGGGCGACGAC
GAGTTGAGCGAGGCGAGCAGGGGCTGGGGCTGGGTCTGGGACGGT
Right flanking sequence: Indices 16986 -- 17485
GAGCCCGGTCTGAGACAGGTTCAATCCGTTTCCTAAACCCTGGTTCTGGCCTAAGCCTTGGTTCT
GGCCTAAGCCTTGAGTCTGACCCAACCCTTGAGCCTGACCTAATCCCTGGTTCTGACCCAAGCCC
TGGTTCTGGCCCAATCCTTGGCTCATCCCTTGACCCAAGCCTTGACCCATCCCCTGGCTCTGACC
CATCCCAAAGCCCAGCTGCGAGAGCGTCCGTGGCATCATCTGAGGCGTCGCCAGCCCCAGCTGCG
AGCCCCAGAGCAGTGGCAGCGCCGTCTGGCCCGGCTGTGGCCCCAGAAGCGACGTCTGGCGGGTG
CTGGGCTGGCTCCAGATCAGGTTGCGCTGGGGAGTGGCCTGGCCAGCACTGGACCCGGCCCATTG
GGACCCAAACGGCTCGGAGAACGGCGAGAATTGCAGCGGCTGGCCCAACAACGGGTTGGCCAGCG
CCAAGAACGGCAGTGCTCCGCCCAACGTCAGGCCCCCGAGAATGG
Found at i:17047 original size:18 final size:18
Alignment explanation
Indices: 17026--17136 Score: 82
Period size: 18 Copynumber: 6.2 Consensus size: 18
17016 TCCTAAACCC
* *
17026 TGGTTCTGGCCTAAGCCT
1 TGGTTCTGACCCAAGCCT
* *
17044 TGGTTCTGGCCTAAGCCT
1 TGGTTCTGACCCAAGCCT
*
17062 TGAG-TCTGACCCAACCCT
1 TG-GTTCTGACCCAAGCCT
* * * *
17080 TGAG-CCTGACCTAATCCC
1 TG-GTTCTGACCCAAGCCT
*
17098 TGGTTCTGACCCAAGCCC
1 TGGTTCTGACCCAAGCCT
* *
17116 TGGTTCTGGCCCAATCCT
1 TGGTTCTGACCCAAGCCT
17134 TGG
1 TGG
17137 CTCATCCCTT
Statistics
Matches: 78, Mismatches: 13, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
17 1 0.01
18 76 0.97
19 1 0.01
ACGTcount: A:0.15, C:0.33, G:0.23, T:0.28
Consensus pattern (18 bp):
TGGTTCTGACCCAAGCCT
Left flanking sequence: Indices 16526 -- 17025
ACCGGGTTCCGTACTGTCCCAAAAGGTCCGGCTAGGCAAACTGCGGCAGCAGCGCAAACGGCACC
TGGCTGATCTGGCCCGGAGCAGGGTTCCCCAGCAGCGGCAGCACCTTGACATGGGTCACCGTGCC
CACGTCGTCGTAAATAATGTCGAACGTGTAGTGGTGGGACGTCCGGATCAGCGTCAAGAACTGCC
CGAGGGTGAGCAGAGCACCCACAAGCGTCCGCACCTGGGCAAAGAGCTTCAGCACGGGGGCCACG
CCAAACTCGAGCGCGCCCTGCTGCTGCAACTGGTGGTAGGCGTTGTAGGTGGCCAACTGGATGAC
GTCGGCGTCGCCGCCGGCCACCAGCAGCACCATGGGCGACGACGAGTTGAGCGAGGCGAGCAGGG
GCTGGGGCTGGGTCTGGGACGGTTGAGACTGGCCAAGGGTCTGAGACTGGCCAAGGGTCTGAGAC
TGGCCGAGCCCGGTCTGAGACAGGTTCAATCCGTTTCCTAAACCC
Right flanking sequence: Indices 17137 -- 17636
CTCATCCCTTGACCCAAGCCTTGACCCATCCCCTGGCTCTGACCCATCCCAAAGCCCAGCTGCGA
GAGCGTCCGTGGCATCATCTGAGGCGTCGCCAGCCCCAGCTGCGAGCCCCAGAGCAGTGGCAGCG
CCGTCTGGCCCGGCTGTGGCCCCAGAAGCGACGTCTGGCGGGTGCTGGGCTGGCTCCAGATCAGG
TTGCGCTGGGGAGTGGCCTGGCCAGCACTGGACCCGGCCCATTGGGACCCAAACGGCTCGGAGAA
CGGCGAGAATTGCAGCGGCTGGCCCAACAACGGGTTGGCCAGCGCCAAGAACGGCAGTGCTCCGC
CCAACGTCAGGCCCCCGAGAATGGGGGTGCCGCTCACGAGCAGCGCCAGCGTCGTCCACGGCAGC
AGCAGGCCCCGCAGGCCCAGCCCGCGGTAGGCGGGCCCGTTGGCCTGGGTGGACCCGGGGGGCCC
TGGGTTGAGCCCCGGGGGAGGCAGCGGGGTGTACTTGGGGCCGCG
Found at i:17081 original size:36 final size:37
Alignment explanation
Indices: 17017--17136 Score: 106
Period size: 36 Copynumber: 3.3 Consensus size: 37
17007 CAATCCGTTT
* * * *
17017 CCTAAACCCTGGTTCTGGCCTAAG-CCTTGGTTCTGG
1 CCTAATCCTTGGTTCTGACCCAAGCCCTTGGTTCTGG
* * *
17053 CCTAAGCCTTGAG-TCTGACCCAA-CCCTTGAG-CCTGA
1 CCTAATCCTTG-GTTCTGACCCAAGCCCTTG-GTTCTGG
*
17089 CCTAATCCCTGGTTCTGACCCAAGCCC-TGGTTCTGG
1 CCTAATCCTTGGTTCTGACCCAAGCCCTTGGTTCTGG
*
17125 CCCAATCCTTGG
1 CCTAATCCTTGG
17137 CTCATCCCTT
Statistics
Matches: 66, Mismatches: 12, Indels: 12
0.73 0.13 0.13
Matches are distributed among these distances:
35 2 0.03
36 59 0.89
37 5 0.08
ACGTcount: A:0.17, C:0.35, G:0.22, T:0.27
Consensus pattern (37 bp):
CCTAATCCTTGGTTCTGACCCAAGCCCTTGGTTCTGG
Left flanking sequence: Indices 16517 -- 17016
TCCACAACGACCGGGTTCCGTACTGTCCCAAAAGGTCCGGCTAGGCAAACTGCGGCAGCAGCGCA
AACGGCACCTGGCTGATCTGGCCCGGAGCAGGGTTCCCCAGCAGCGGCAGCACCTTGACATGGGT
CACCGTGCCCACGTCGTCGTAAATAATGTCGAACGTGTAGTGGTGGGACGTCCGGATCAGCGTCA
AGAACTGCCCGAGGGTGAGCAGAGCACCCACAAGCGTCCGCACCTGGGCAAAGAGCTTCAGCACG
GGGGCCACGCCAAACTCGAGCGCGCCCTGCTGCTGCAACTGGTGGTAGGCGTTGTAGGTGGCCAA
CTGGATGACGTCGGCGTCGCCGCCGGCCACCAGCAGCACCATGGGCGACGACGAGTTGAGCGAGG
CGAGCAGGGGCTGGGGCTGGGTCTGGGACGGTTGAGACTGGCCAAGGGTCTGAGACTGGCCAAGG
GTCTGAGACTGGCCGAGCCCGGTCTGAGACAGGTTCAATCCGTTT
Right flanking sequence: Indices 17137 -- 17636
CTCATCCCTTGACCCAAGCCTTGACCCATCCCCTGGCTCTGACCCATCCCAAAGCCCAGCTGCGA
GAGCGTCCGTGGCATCATCTGAGGCGTCGCCAGCCCCAGCTGCGAGCCCCAGAGCAGTGGCAGCG
CCGTCTGGCCCGGCTGTGGCCCCAGAAGCGACGTCTGGCGGGTGCTGGGCTGGCTCCAGATCAGG
TTGCGCTGGGGAGTGGCCTGGCCAGCACTGGACCCGGCCCATTGGGACCCAAACGGCTCGGAGAA
CGGCGAGAATTGCAGCGGCTGGCCCAACAACGGGTTGGCCAGCGCCAAGAACGGCAGTGCTCCGC
CCAACGTCAGGCCCCCGAGAATGGGGGTGCCGCTCACGAGCAGCGCCAGCGTCGTCCACGGCAGC
AGCAGGCCCCGCAGGCCCAGCCCGCGGTAGGCGGGCCCGTTGGCCTGGGTGGACCCGGGGGGCCC
TGGGTTGAGCCCCGGGGGAGGCAGCGGGGTGTACTTGGGGCCGCG
Found at i:17920 original size:18 final size:18
Alignment explanation
Indices: 17899--17961 Score: 65
Period size: 18 Copynumber: 3.5 Consensus size: 18
17889 GGGTTGGGAG
*
17899 GACTGGGCGTTGGAGCCA
1 GACTGGGCATTGGAGCCA
*
17917 GACTGGGCATTGGCA-CCG
1 GACTGGGCATTGG-AGCCA
* * *
17935 GCCTGAGCATTCGAGCCA
1 GACTGGGCATTGGAGCCA
17953 GACTGGGCA
1 GACTGGGCA
17962 GAGCCCTGGC
Statistics
Matches: 35, Mismatches: 8, Indels: 4
0.74 0.17 0.09
Matches are distributed among these distances:
17 1 0.03
18 33 0.94
19 1 0.03
ACGTcount: A:0.19, C:0.27, G:0.38, T:0.16
Consensus pattern (18 bp):
GACTGGGCATTGGAGCCA
Left flanking sequence: Indices 17399 -- 17898
GCGAGAATTGCAGCGGCTGGCCCAACAACGGGTTGGCCAGCGCCAAGAACGGCAGTGCTCCGCCC
AACGTCAGGCCCCCGAGAATGGGGGTGCCGCTCACGAGCAGCGCCAGCGTCGTCCACGGCAGCAG
CAGGCCCCGCAGGCCCAGCCCGCGGTAGGCGGGCCCGTTGGCCTGGGTGGACCCGGGGGGCCCTG
GGTTGAGCCCCGGGGGAGGCAGCGGGGTGTACTTGGGGCCGCGCACCGCGTCCAACGGCGCCAGT
TGTTGGTACAACAGGTCGAGCAACGGGTTGGATCCGAGCGGGTGGTCGTCGCCGAACCCCTCGAG
GGGCGTGGGGAGCTGGGACGGGTGCGACCCGAGCCCGGGGGGCCCCGCCATCACGGGGCGGGGCC
CGTAAGGGGACCCGGTGGCGGCGTCGGTGCCCCGGGGCACGGTGTGCGGGTCCACGGGGGACTCG
CGGCCCGGGCGGGATGGCTGGGTGGAGGTGTGGGAGGGTTGGGAG
Right flanking sequence: Indices 17962 -- 18461
GAGCCCTGGCGCGCCTTCTCCCGGGCCTCCTCCCGTCGCACCTCTTCTCGCCGCTTCTCCTGTTT
TCGCTCCTCTTGTCTTCTCTCCTCCTCTCTTCTCGCCTCCTCCTTTCTCTCCTCTTCTCTCCTCT
CCTCTTCCCTTCGCTCCTCCTCCTCCACCCGCGCGCGCTCCTCGTCCTCCTTGCGCCGCTTCTCC
TCCTCCTTGCGCCGCATCTCCTCGATCCGCCGCCGCTTCTCCTCGTCCTTCTTCTGCTGCTTCTC
CTCCTTGCGCCGGCGCTGCTCCGCCCTTTGTGCCTCCTGGCGCGCGCGCACCTCCTCCTCCTCCT
TGGCCGCCGCCTCCGCCGCCGCCCGGCGCTCCTCCTCCTTGGCCGCCGCCGCCAACTTCTTCTTC
TCGCGCTGGCGCTCCTTCTGGCGCGCCTTCTTGGCCTCGCGCTCCTTCTTGGCCGTCTCCTCCGC
CTCCAACTCCTCGATCAACTGCTGGGTGCGGTCCTCGGCCACCTT
Found at i:18048 original size:15 final size:15
Alignment explanation
Indices: 18030--18110 Score: 83
Period size: 15 Copynumber: 5.4 Consensus size: 15
18020 CCTGTTTTCG
*
18030 CTCCTCTTGTCTTCT
1 CTCCTCTTCTCTTCT
*
18045 CTCCTCCTCTCTTCT
1 CTCCTCTTCTCTTCT
* *
18060 CGCCTCCTC-CTTTCT
1 CTCCTCTTCTC-TTCT
*
18075 CTCCTCTTCTCTCCT
1 CTCCTCTTCTCTTCT
* *
18090 CTCCTCTTCCCTTCG
1 CTCCTCTTCTCTTCT
18105 CTCCTC
1 CTCCTC
18111 CTCCTCCACC
Statistics
Matches: 55, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
14 1 0.02
15 53 0.96
16 1 0.02
ACGTcount: A:0.00, C:0.52, G:0.04, T:0.44
Consensus pattern (15 bp):
CTCCTCTTCTCTTCT
Left flanking sequence: Indices 17530 -- 18029
AGGCCCCGCAGGCCCAGCCCGCGGTAGGCGGGCCCGTTGGCCTGGGTGGACCCGGGGGGCCCTGG
GTTGAGCCCCGGGGGAGGCAGCGGGGTGTACTTGGGGCCGCGCACCGCGTCCAACGGCGCCAGTT
GTTGGTACAACAGGTCGAGCAACGGGTTGGATCCGAGCGGGTGGTCGTCGCCGAACCCCTCGAGG
GGCGTGGGGAGCTGGGACGGGTGCGACCCGAGCCCGGGGGGCCCCGCCATCACGGGGCGGGGCCC
GTAAGGGGACCCGGTGGCGGCGTCGGTGCCCCGGGGCACGGTGTGCGGGTCCACGGGGGACTCGC
GGCCCGGGCGGGATGGCTGGGTGGAGGTGTGGGAGGGTTGGGAGGACTGGGCGTTGGAGCCAGAC
TGGGCATTGGCACCGGCCTGAGCATTCGAGCCAGACTGGGCAGAGCCCTGGCGCGCCTTCTCCCG
GGCCTCCTCCCGTCGCACCTCTTCTCGCCGCTTCTCCTGTTTTCG
Right flanking sequence: Indices 18111 -- 18610
CTCCTCCACCCGCGCGCGCTCCTCGTCCTCCTTGCGCCGCTTCTCCTCCTCCTTGCGCCGCATCT
CCTCGATCCGCCGCCGCTTCTCCTCGTCCTTCTTCTGCTGCTTCTCCTCCTTGCGCCGGCGCTGC
TCCGCCCTTTGTGCCTCCTGGCGCGCGCGCACCTCCTCCTCCTCCTTGGCCGCCGCCTCCGCCGC
CGCCCGGCGCTCCTCCTCCTTGGCCGCCGCCGCCAACTTCTTCTTCTCGCGCTGGCGCTCCTTCT
GGCGCGCCTTCTTGGCCTCGCGCTCCTTCTTGGCCGTCTCCTCCGCCTCCAACTCCTCGATCAAC
TGCTGGGTGCGGTCCTCGGCCACCTTGGCCTTGTAGGCGTTCTTCAACCGCTCCTGGAACAACTT
GATCACCTGGATGAGGAACAACCGCCGGATCTCCTGCATCTTCTCTTCCTCCAGGATCTCCAGCT
CGGTGTCGCTGACGGCGTCCTCCAGGAGCTCGCCCTCGGACTCCA
Found at i:18075 original size:30 final size:30
Alignment explanation
Indices: 18040--18117 Score: 95
Period size: 30 Copynumber: 2.6 Consensus size: 30
18030 CTCCTCTTGT
*
18040 CTTCTCTCCTCCTCTCTTCTCGCCTCCTCC
1 CTTCTCTCCTCCTCTCTCCTCGCCTCCTCC
* * * *
18070 TTTCTCTCCTCTTCTCTCCTCTCCTCTTCC
1 CTTCTCTCCTCCTCTCTCCTCGCCTCCTCC
*
18100 CTTCGCTCCTCCTC-CTCC
1 CTTCTCTCCTCCTCTCTCC
18118 ACCCGCGCGC
Statistics
Matches: 40, Mismatches: 8, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
29 4 0.10
30 36 0.90
ACGTcount: A:0.00, C:0.55, G:0.03, T:0.42
Consensus pattern (30 bp):
CTTCTCTCCTCCTCTCTCCTCGCCTCCTCC
Left flanking sequence: Indices 17540 -- 18039
GGCCCAGCCCGCGGTAGGCGGGCCCGTTGGCCTGGGTGGACCCGGGGGGCCCTGGGTTGAGCCCC
GGGGGAGGCAGCGGGGTGTACTTGGGGCCGCGCACCGCGTCCAACGGCGCCAGTTGTTGGTACAA
CAGGTCGAGCAACGGGTTGGATCCGAGCGGGTGGTCGTCGCCGAACCCCTCGAGGGGCGTGGGGA
GCTGGGACGGGTGCGACCCGAGCCCGGGGGGCCCCGCCATCACGGGGCGGGGCCCGTAAGGGGAC
CCGGTGGCGGCGTCGGTGCCCCGGGGCACGGTGTGCGGGTCCACGGGGGACTCGCGGCCCGGGCG
GGATGGCTGGGTGGAGGTGTGGGAGGGTTGGGAGGACTGGGCGTTGGAGCCAGACTGGGCATTGG
CACCGGCCTGAGCATTCGAGCCAGACTGGGCAGAGCCCTGGCGCGCCTTCTCCCGGGCCTCCTCC
CGTCGCACCTCTTCTCGCCGCTTCTCCTGTTTTCGCTCCTCTTGT
Right flanking sequence: Indices 18118 -- 18617
ACCCGCGCGCGCTCCTCGTCCTCCTTGCGCCGCTTCTCCTCCTCCTTGCGCCGCATCTCCTCGAT
CCGCCGCCGCTTCTCCTCGTCCTTCTTCTGCTGCTTCTCCTCCTTGCGCCGGCGCTGCTCCGCCC
TTTGTGCCTCCTGGCGCGCGCGCACCTCCTCCTCCTCCTTGGCCGCCGCCTCCGCCGCCGCCCGG
CGCTCCTCCTCCTTGGCCGCCGCCGCCAACTTCTTCTTCTCGCGCTGGCGCTCCTTCTGGCGCGC
CTTCTTGGCCTCGCGCTCCTTCTTGGCCGTCTCCTCCGCCTCCAACTCCTCGATCAACTGCTGGG
TGCGGTCCTCGGCCACCTTGGCCTTGTAGGCGTTCTTCAACCGCTCCTGGAACAACTTGATCACC
TGGATGAGGAACAACCGCCGGATCTCCTGCATCTTCTCTTCCTCCAGGATCTCCAGCTCGGTGTC
GCTGACGGCGTCCTCCAGGAGCTCGCCCTCGGACTCCAGGAGCTC
Found at i:18079 original size:45 final size:45
Alignment explanation
Indices: 18025--18115 Score: 119
Period size: 45 Copynumber: 2.0 Consensus size: 45
18015 CTTCTCCTGT
* * * *
18025 TTTCGCTCCTCTTGTCTTCTCTCCTCCTCTCTTCTCGCCTCCTCC
1 TTTCGCTCCTCTTCTCTCCTCTCCTCCTCCCTTCGCGCCTCCTCC
* * *
18070 TTTCTCTCCTCTTCTCTCCTCTCCTCTTCCCTTCGCTCCTCCTCC
1 TTTCGCTCCTCTTCTCTCCTCTCCTCCTCCCTTCGCGCCTCCTCC
18115 T
1 T
18116 CCACCCGCGC
Statistics
Matches: 39, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
45 39 1.00
ACGTcount: A:0.00, C:0.51, G:0.04, T:0.45
Consensus pattern (45 bp):
TTTCGCTCCTCTTCTCTCCTCTCCTCCTCCCTTCGCGCCTCCTCC
Left flanking sequence: Indices 17525 -- 18024
GCAGCAGGCCCCGCAGGCCCAGCCCGCGGTAGGCGGGCCCGTTGGCCTGGGTGGACCCGGGGGGC
CCTGGGTTGAGCCCCGGGGGAGGCAGCGGGGTGTACTTGGGGCCGCGCACCGCGTCCAACGGCGC
CAGTTGTTGGTACAACAGGTCGAGCAACGGGTTGGATCCGAGCGGGTGGTCGTCGCCGAACCCCT
CGAGGGGCGTGGGGAGCTGGGACGGGTGCGACCCGAGCCCGGGGGGCCCCGCCATCACGGGGCGG
GGCCCGTAAGGGGACCCGGTGGCGGCGTCGGTGCCCCGGGGCACGGTGTGCGGGTCCACGGGGGA
CTCGCGGCCCGGGCGGGATGGCTGGGTGGAGGTGTGGGAGGGTTGGGAGGACTGGGCGTTGGAGC
CAGACTGGGCATTGGCACCGGCCTGAGCATTCGAGCCAGACTGGGCAGAGCCCTGGCGCGCCTTC
TCCCGGGCCTCCTCCCGTCGCACCTCTTCTCGCCGCTTCTCCTGT
Right flanking sequence: Indices 18116 -- 18615
CCACCCGCGCGCGCTCCTCGTCCTCCTTGCGCCGCTTCTCCTCCTCCTTGCGCCGCATCTCCTCG
ATCCGCCGCCGCTTCTCCTCGTCCTTCTTCTGCTGCTTCTCCTCCTTGCGCCGGCGCTGCTCCGC
CCTTTGTGCCTCCTGGCGCGCGCGCACCTCCTCCTCCTCCTTGGCCGCCGCCTCCGCCGCCGCCC
GGCGCTCCTCCTCCTTGGCCGCCGCCGCCAACTTCTTCTTCTCGCGCTGGCGCTCCTTCTGGCGC
GCCTTCTTGGCCTCGCGCTCCTTCTTGGCCGTCTCCTCCGCCTCCAACTCCTCGATCAACTGCTG
GGTGCGGTCCTCGGCCACCTTGGCCTTGTAGGCGTTCTTCAACCGCTCCTGGAACAACTTGATCA
CCTGGATGAGGAACAACCGCCGGATCTCCTGCATCTTCTCTTCCTCCAGGATCTCCAGCTCGGTG
TCGCTGACGGCGTCCTCCAGGAGCTCGCCCTCGGACTCCAGGAGC
Found at i:18151 original size:21 final size:21
Alignment explanation
Indices: 18108--18179 Score: 76
Period size: 21 Copynumber: 3.4 Consensus size: 21
18098 CCCTTCGCTC
* *
18108 CTCCTCCTCCACC-CGCGCGCG
1 CTCCTCCTCCTCCTTGCGC-CG
*
18129 CTCCTCGTCCTCCTTGCGCCG
1 CTCCTCCTCCTCCTTGCGCCG
*
18150 CTTCTCCTCCTCCTTGCGCCG
1 CTCCTCCTCCTCCTTGCGCCG
18171 CAT-CTCCTC
1 C-TCCTCCTC
18180 GATCCGCCGC
Statistics
Matches: 44, Mismatches: 5, Indels: 4
0.83 0.09 0.08
Matches are distributed among these distances:
21 39 0.89
22 5 0.11
ACGTcount: A:0.03, C:0.56, G:0.15, T:0.26
Consensus pattern (21 bp):
CTCCTCCTCCTCCTTGCGCCG
Left flanking sequence: Indices 17608 -- 18107
GGAGGCAGCGGGGTGTACTTGGGGCCGCGCACCGCGTCCAACGGCGCCAGTTGTTGGTACAACAG
GTCGAGCAACGGGTTGGATCCGAGCGGGTGGTCGTCGCCGAACCCCTCGAGGGGCGTGGGGAGCT
GGGACGGGTGCGACCCGAGCCCGGGGGGCCCCGCCATCACGGGGCGGGGCCCGTAAGGGGACCCG
GTGGCGGCGTCGGTGCCCCGGGGCACGGTGTGCGGGTCCACGGGGGACTCGCGGCCCGGGCGGGA
TGGCTGGGTGGAGGTGTGGGAGGGTTGGGAGGACTGGGCGTTGGAGCCAGACTGGGCATTGGCAC
CGGCCTGAGCATTCGAGCCAGACTGGGCAGAGCCCTGGCGCGCCTTCTCCCGGGCCTCCTCCCGT
CGCACCTCTTCTCGCCGCTTCTCCTGTTTTCGCTCCTCTTGTCTTCTCTCCTCCTCTCTTCTCGC
CTCCTCCTTTCTCTCCTCTTCTCTCCTCTCCTCTTCCCTTCGCTC
Right flanking sequence: Indices 18180 -- 18679
GATCCGCCGCCGCTTCTCCTCGTCCTTCTTCTGCTGCTTCTCCTCCTTGCGCCGGCGCTGCTCCG
CCCTTTGTGCCTCCTGGCGCGCGCGCACCTCCTCCTCCTCCTTGGCCGCCGCCTCCGCCGCCGCC
CGGCGCTCCTCCTCCTTGGCCGCCGCCGCCAACTTCTTCTTCTCGCGCTGGCGCTCCTTCTGGCG
CGCCTTCTTGGCCTCGCGCTCCTTCTTGGCCGTCTCCTCCGCCTCCAACTCCTCGATCAACTGCT
GGGTGCGGTCCTCGGCCACCTTGGCCTTGTAGGCGTTCTTCAACCGCTCCTGGAACAACTTGATC
ACCTGGATGAGGAACAACCGCCGGATCTCCTGCATCTTCTCTTCCTCCAGGATCTCCAGCTCGGT
GTCGCTGACGGCGTCCTCCAGGAGCTCGCCCTCGGACTCCAGGAGCTCGTCGTCGGGGTGCGGGT
GGCTGTGCGGGTCGTCCCAGTGCCGGGGCTCGTGCTCCGGGTGCT
Found at i:18156 original size:24 final size:24
Alignment explanation
Indices: 18129--18224 Score: 82
Period size: 21 Copynumber: 4.2 Consensus size: 24
18119 CCCGCGCGCG
18129 CTCCTCGTCCTCCTTGCGCCGCTT
1 CTCCTCGTCCTCCTTGCGCCGCTT
*
18153 CT-C-C-TCCTCCTTGCGCCGCAT
1 CTCCTCGTCCTCCTTGCGCCGCTT
*
18174 CTCCTCG--ATCC--GCCGCCGCTT
1 CTCCTCGTCCTCCTTG-CGCCGCTT
* *
18195 CTCCTCGTCCTTCTT-CTGCTGCTT
1 CTCCTCGTCCTCCTTGC-GCCGCTT
18219 CTCCTC
1 CTCCTC
18225 CTTGCGCCGG
Statistics
Matches: 57, Mismatches: 6, Indels: 18
0.70 0.07 0.22
Matches are distributed among these distances:
20 1 0.02
21 32 0.56
22 5 0.09
23 5 0.09
24 14 0.25
ACGTcount: A:0.02, C:0.50, G:0.15, T:0.33
Consensus pattern (24 bp):
CTCCTCGTCCTCCTTGCGCCGCTT
Left flanking sequence: Indices 17629 -- 18128
GGGCCGCGCACCGCGTCCAACGGCGCCAGTTGTTGGTACAACAGGTCGAGCAACGGGTTGGATCC
GAGCGGGTGGTCGTCGCCGAACCCCTCGAGGGGCGTGGGGAGCTGGGACGGGTGCGACCCGAGCC
CGGGGGGCCCCGCCATCACGGGGCGGGGCCCGTAAGGGGACCCGGTGGCGGCGTCGGTGCCCCGG
GGCACGGTGTGCGGGTCCACGGGGGACTCGCGGCCCGGGCGGGATGGCTGGGTGGAGGTGTGGGA
GGGTTGGGAGGACTGGGCGTTGGAGCCAGACTGGGCATTGGCACCGGCCTGAGCATTCGAGCCAG
ACTGGGCAGAGCCCTGGCGCGCCTTCTCCCGGGCCTCCTCCCGTCGCACCTCTTCTCGCCGCTTC
TCCTGTTTTCGCTCCTCTTGTCTTCTCTCCTCCTCTCTTCTCGCCTCCTCCTTTCTCTCCTCTTC
TCTCCTCTCCTCTTCCCTTCGCTCCTCCTCCTCCACCCGCGCGCG
Right flanking sequence: Indices 18225 -- 18724
CTTGCGCCGGCGCTGCTCCGCCCTTTGTGCCTCCTGGCGCGCGCGCACCTCCTCCTCCTCCTTGG
CCGCCGCCTCCGCCGCCGCCCGGCGCTCCTCCTCCTTGGCCGCCGCCGCCAACTTCTTCTTCTCG
CGCTGGCGCTCCTTCTGGCGCGCCTTCTTGGCCTCGCGCTCCTTCTTGGCCGTCTCCTCCGCCTC
CAACTCCTCGATCAACTGCTGGGTGCGGTCCTCGGCCACCTTGGCCTTGTAGGCGTTCTTCAACC
GCTCCTGGAACAACTTGATCACCTGGATGAGGAACAACCGCCGGATCTCCTGCATCTTCTCTTCC
TCCAGGATCTCCAGCTCGGTGTCGCTGACGGCGTCCTCCAGGAGCTCGCCCTCGGACTCCAGGAG
CTCGTCGTCGGGGTGCGGGTGGCTGTGCGGGTCGTCCCAGTGCCGGGGCTCGTGCTCCGGGTGCT
GGCACTGGCTGTCGTGGTAGTGGCCGTCGCGGTGGTCGTCGTCGC
Found at i:19026 original size:9 final size:9
Alignment explanation
Indices: 19011--19061 Score: 66
Period size: 9 Copynumber: 5.7 Consensus size: 9
19001 TGGCGTTGGT
19011 GTTGGTTGC
1 GTTGGTTGC
*
19020 ATTGGTTGC
1 GTTGGTTGC
*
19029 GTTGGTGGC
1 GTTGGTTGC
**
19038 AATGGTTGC
1 GTTGGTTGC
19047 GTTGGTTGC
1 GTTGGTTGC
19056 GTTGGT
1 GTTGGT
19062 GGCAATGGCA
Statistics
Matches: 34, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
9 34 1.00
ACGTcount: A:0.06, C:0.10, G:0.43, T:0.41
Consensus pattern (9 bp):
GTTGGTTGC
Left flanking sequence: Indices 18511 -- 19010
ATGAGGAACAACCGCCGGATCTCCTGCATCTTCTCTTCCTCCAGGATCTCCAGCTCGGTGTCGCT
GACGGCGTCCTCCAGGAGCTCGCCCTCGGACTCCAGGAGCTCGTCGTCGGGGTGCGGGTGGCTGT
GCGGGTCGTCCCAGTGCCGGGGCTCGTGCTCCGGGTGCTGGCACTGGCTGTCGTGGTAGTGGCCG
TCGCGGTGGTCGTCGTCGCCGCCGTCGTCCAGCTCGTCTGCGAGCTCCCGGGCGAGCTGCTCGGA
GAACATCTTCACCCGCGGGTCCACCGGGTGGCCGTCGTCGTCGGGCATCTTGAGGAGCTCCTCGC
GGGCCAGGCGCAGCTCCAGCAACAGCTCCATCATCTCGATGAACAGGTGGCCGTCGTTCTTGAGG
AGGTCCTCGGCGAAGCTCAGGAGGCCCTGCGAGAACTGGCCAAACAGGTCCAGCGGGAGCGTGGG
CGGTGGTGGTGCCACAGGGAGGGTGGTGATGGCGTTGGCGTTGGT
Right flanking sequence: Indices 19062 -- 19561
GGCAATGGCATTGGTGGCATTGGCTGTGCTGGTGCTTGTGTTCGCACCTGCACTGGCACCGGCAC
TCGCACTGGTACCGGCACTCGCACTTGCGTTCGCGCTCGCACTGGCACCGGCAATCGCACTGGCA
CCTGCGTTCGCACTCGCAATGGCACCTGTGTGTGCACTCACATCACTCCCATTACCTGCCTGGCC
CTCCTGGGCCGCCGTCAAGATCTTGCCCATGCTCTGCAAGAACGACATCCCCTTCTCCAACTGCA
CCTTGTCGGCACGATGGAGATCACGAATAATCTCCCGCAAGCTCAGCGCCTTCTGCAAGAGATTC
ACCAGGTTGGCATCGGTGTTGACGTCGCGGAGCTTGTCAAAGTCGAGGTTCTCAAGCGCCTCAAA
GAGTTTGGGGTCCAACAACTTGTGGAACACTTTCTGCTCGTCGACCGAGAGCAGTGACGGTAGCG
ATGGGAGGCCCGTGGCGGTGGCGGTGGCGTTGGTGCGGTTGGCAA
Found at i:19034 original size:18 final size:18
Alignment explanation
Indices: 19011--19061 Score: 75
Period size: 18 Copynumber: 2.8 Consensus size: 18
19001 TGGCGTTGGT
19011 GTTGGTTGCATTGGTTGC
1 GTTGGTTGCATTGGTTGC
* *
19029 GTTGGTGGCAATGGTTGC
1 GTTGGTTGCATTGGTTGC
*
19047 GTTGGTTGCGTTGGT
1 GTTGGTTGCATTGGT
19062 GGCAATGGCA
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
18 28 1.00
ACGTcount: A:0.06, C:0.10, G:0.43, T:0.41
Consensus pattern (18 bp):
GTTGGTTGCATTGGTTGC
Left flanking sequence: Indices 18511 -- 19010
ATGAGGAACAACCGCCGGATCTCCTGCATCTTCTCTTCCTCCAGGATCTCCAGCTCGGTGTCGCT
GACGGCGTCCTCCAGGAGCTCGCCCTCGGACTCCAGGAGCTCGTCGTCGGGGTGCGGGTGGCTGT
GCGGGTCGTCCCAGTGCCGGGGCTCGTGCTCCGGGTGCTGGCACTGGCTGTCGTGGTAGTGGCCG
TCGCGGTGGTCGTCGTCGCCGCCGTCGTCCAGCTCGTCTGCGAGCTCCCGGGCGAGCTGCTCGGA
GAACATCTTCACCCGCGGGTCCACCGGGTGGCCGTCGTCGTCGGGCATCTTGAGGAGCTCCTCGC
GGGCCAGGCGCAGCTCCAGCAACAGCTCCATCATCTCGATGAACAGGTGGCCGTCGTTCTTGAGG
AGGTCCTCGGCGAAGCTCAGGAGGCCCTGCGAGAACTGGCCAAACAGGTCCAGCGGGAGCGTGGG
CGGTGGTGGTGCCACAGGGAGGGTGGTGATGGCGTTGGCGTTGGT
Right flanking sequence: Indices 19062 -- 19561
GGCAATGGCATTGGTGGCATTGGCTGTGCTGGTGCTTGTGTTCGCACCTGCACTGGCACCGGCAC
TCGCACTGGTACCGGCACTCGCACTTGCGTTCGCGCTCGCACTGGCACCGGCAATCGCACTGGCA
CCTGCGTTCGCACTCGCAATGGCACCTGTGTGTGCACTCACATCACTCCCATTACCTGCCTGGCC
CTCCTGGGCCGCCGTCAAGATCTTGCCCATGCTCTGCAAGAACGACATCCCCTTCTCCAACTGCA
CCTTGTCGGCACGATGGAGATCACGAATAATCTCCCGCAAGCTCAGCGCCTTCTGCAAGAGATTC
ACCAGGTTGGCATCGGTGTTGACGTCGCGGAGCTTGTCAAAGTCGAGGTTCTCAAGCGCCTCAAA
GAGTTTGGGGTCCAACAACTTGTGGAACACTTTCTGCTCGTCGACCGAGAGCAGTGACGGTAGCG
ATGGGAGGCCCGTGGCGGTGGCGGTGGCGTTGGTGCGGTTGGCAA
Found at i:19051 original size:27 final size:27
Alignment explanation
Indices: 19013--19069 Score: 105
Period size: 27 Copynumber: 2.1 Consensus size: 27
19003 GCGTTGGTGT
19013 TGGTTGCATTGGTTGCGTTGGTGGCAA
1 TGGTTGCATTGGTTGCGTTGGTGGCAA
*
19040 TGGTTGCGTTGGTTGCGTTGGTGGCAA
1 TGGTTGCATTGGTTGCGTTGGTGGCAA
19067 TGG
1 TGG
19070 CATTGGTGGC
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.09, C:0.11, G:0.44, T:0.37
Consensus pattern (27 bp):
TGGTTGCATTGGTTGCGTTGGTGGCAA
Left flanking sequence: Indices 18513 -- 19012
GAGGAACAACCGCCGGATCTCCTGCATCTTCTCTTCCTCCAGGATCTCCAGCTCGGTGTCGCTGA
CGGCGTCCTCCAGGAGCTCGCCCTCGGACTCCAGGAGCTCGTCGTCGGGGTGCGGGTGGCTGTGC
GGGTCGTCCCAGTGCCGGGGCTCGTGCTCCGGGTGCTGGCACTGGCTGTCGTGGTAGTGGCCGTC
GCGGTGGTCGTCGTCGCCGCCGTCGTCCAGCTCGTCTGCGAGCTCCCGGGCGAGCTGCTCGGAGA
ACATCTTCACCCGCGGGTCCACCGGGTGGCCGTCGTCGTCGGGCATCTTGAGGAGCTCCTCGCGG
GCCAGGCGCAGCTCCAGCAACAGCTCCATCATCTCGATGAACAGGTGGCCGTCGTTCTTGAGGAG
GTCCTCGGCGAAGCTCAGGAGGCCCTGCGAGAACTGGCCAAACAGGTCCAGCGGGAGCGTGGGCG
GTGGTGGTGCCACAGGGAGGGTGGTGATGGCGTTGGCGTTGGTGT
Right flanking sequence: Indices 19070 -- 19569
CATTGGTGGCATTGGCTGTGCTGGTGCTTGTGTTCGCACCTGCACTGGCACCGGCACTCGCACTG
GTACCGGCACTCGCACTTGCGTTCGCGCTCGCACTGGCACCGGCAATCGCACTGGCACCTGCGTT
CGCACTCGCAATGGCACCTGTGTGTGCACTCACATCACTCCCATTACCTGCCTGGCCCTCCTGGG
CCGCCGTCAAGATCTTGCCCATGCTCTGCAAGAACGACATCCCCTTCTCCAACTGCACCTTGTCG
GCACGATGGAGATCACGAATAATCTCCCGCAAGCTCAGCGCCTTCTGCAAGAGATTCACCAGGTT
GGCATCGGTGTTGACGTCGCGGAGCTTGTCAAAGTCGAGGTTCTCAAGCGCCTCAAAGAGTTTGG
GGTCCAACAACTTGTGGAACACTTTCTGCTCGTCGACCGAGAGCAGTGACGGTAGCGATGGGAGG
CCCGTGGCGGTGGCGGTGGCGTTGGTGCGGTTGGCAATGGCCCCG
Found at i:19132 original size:18 final size:18
Alignment explanation
Indices: 19111--19193 Score: 96
Period size: 18 Copynumber: 4.6 Consensus size: 18
19101 GTTCGCACCT
19111 GCACTGGCACCGGCACTC
1 GCACTGGCACCGGCACTC
*
19129 GCACTGGTACCGGCACTC
1 GCACTGGCACCGGCACTC
* ** *
19147 GCACTTGCGTTC-GCGCTC
1 GCACTGGC-ACCGGCACTC
*
19165 GCACTGGCACCGGCAATC
1 GCACTGGCACCGGCACTC
19183 GCACTGGCACC
1 GCACTGGCACC
19194 TGCGTTCGCA
Statistics
Matches: 52, Mismatches: 11, Indels: 4
0.78 0.16 0.06
Matches are distributed among these distances:
17 1 0.02
18 50 0.96
19 1 0.02
ACGTcount: A:0.16, C:0.41, G:0.28, T:0.16
Consensus pattern (18 bp):
GCACTGGCACCGGCACTC
Left flanking sequence: Indices 18611 -- 19110
GGAGCTCGTCGTCGGGGTGCGGGTGGCTGTGCGGGTCGTCCCAGTGCCGGGGCTCGTGCTCCGGG
TGCTGGCACTGGCTGTCGTGGTAGTGGCCGTCGCGGTGGTCGTCGTCGCCGCCGTCGTCCAGCTC
GTCTGCGAGCTCCCGGGCGAGCTGCTCGGAGAACATCTTCACCCGCGGGTCCACCGGGTGGCCGT
CGTCGTCGGGCATCTTGAGGAGCTCCTCGCGGGCCAGGCGCAGCTCCAGCAACAGCTCCATCATC
TCGATGAACAGGTGGCCGTCGTTCTTGAGGAGGTCCTCGGCGAAGCTCAGGAGGCCCTGCGAGAA
CTGGCCAAACAGGTCCAGCGGGAGCGTGGGCGGTGGTGGTGCCACAGGGAGGGTGGTGATGGCGT
TGGCGTTGGTGTTGGTTGCATTGGTTGCGTTGGTGGCAATGGTTGCGTTGGTTGCGTTGGTGGCA
ATGGCATTGGTGGCATTGGCTGTGCTGGTGCTTGTGTTCGCACCT
Right flanking sequence: Indices 19194 -- 19693
TGCGTTCGCACTCGCAATGGCACCTGTGTGTGCACTCACATCACTCCCATTACCTGCCTGGCCCT
CCTGGGCCGCCGTCAAGATCTTGCCCATGCTCTGCAAGAACGACATCCCCTTCTCCAACTGCACC
TTGTCGGCACGATGGAGATCACGAATAATCTCCCGCAAGCTCAGCGCCTTCTGCAAGAGATTCAC
CAGGTTGGCATCGGTGTTGACGTCGCGGAGCTTGTCAAAGTCGAGGTTCTCAAGCGCCTCAAAGA
GTTTGGGGTCCAACAACTTGTGGAACACTTTCTGCTCGTCGACCGAGAGCAGTGACGGTAGCGAT
GGGAGGCCCGTGGCGGTGGCGGTGGCGTTGGTGCGGTTGGCAATGGCCCCGTGCGCCATGGGCGC
GCTGTGTGCATGGGCACCGGCACTGTGCGCCGCGGCACCGGCACCGGCACTGGGCGCACCGGGGT
GGTGTGCACTGGCACCCACCCGCGGCGGACTGCGCCGTGCCTGGC
Found at i:19203 original size:36 final size:36
Alignment explanation
Indices: 19111--19205 Score: 102
Period size: 36 Copynumber: 2.6 Consensus size: 36
19101 GTTCGCACCT
* * * *
19111 GCACTGGCACCGGCACTCGCACTGGTACCGGCACTC
1 GCACTGGCACCTGCGCTCGCACTGGCACCGGCAATC
* **
19147 GCACTTGC-GTTCGCGCTCGCACTGGCACCGGCAATC
1 GCACTGGCACCT-GCGCTCGCACTGGCACCGGCAATC
*
19183 GCACTGGCACCTGCGTTCGCACT
1 GCACTGGCACCTGCGCTCGCACT
19206 CGCAATGGCA
Statistics
Matches: 46, Mismatches: 11, Indels: 4
0.75 0.18 0.07
Matches are distributed among these distances:
36 45 0.98
37 1 0.02
ACGTcount: A:0.15, C:0.40, G:0.27, T:0.18
Consensus pattern (36 bp):
GCACTGGCACCTGCGCTCGCACTGGCACCGGCAATC
Left flanking sequence: Indices 18611 -- 19110
GGAGCTCGTCGTCGGGGTGCGGGTGGCTGTGCGGGTCGTCCCAGTGCCGGGGCTCGTGCTCCGGG
TGCTGGCACTGGCTGTCGTGGTAGTGGCCGTCGCGGTGGTCGTCGTCGCCGCCGTCGTCCAGCTC
GTCTGCGAGCTCCCGGGCGAGCTGCTCGGAGAACATCTTCACCCGCGGGTCCACCGGGTGGCCGT
CGTCGTCGGGCATCTTGAGGAGCTCCTCGCGGGCCAGGCGCAGCTCCAGCAACAGCTCCATCATC
TCGATGAACAGGTGGCCGTCGTTCTTGAGGAGGTCCTCGGCGAAGCTCAGGAGGCCCTGCGAGAA
CTGGCCAAACAGGTCCAGCGGGAGCGTGGGCGGTGGTGGTGCCACAGGGAGGGTGGTGATGGCGT
TGGCGTTGGTGTTGGTTGCATTGGTTGCGTTGGTGGCAATGGTTGCGTTGGTTGCGTTGGTGGCA
ATGGCATTGGTGGCATTGGCTGTGCTGGTGCTTGTGTTCGCACCT
Right flanking sequence: Indices 19206 -- 19705
CGCAATGGCACCTGTGTGTGCACTCACATCACTCCCATTACCTGCCTGGCCCTCCTGGGCCGCCG
TCAAGATCTTGCCCATGCTCTGCAAGAACGACATCCCCTTCTCCAACTGCACCTTGTCGGCACGA
TGGAGATCACGAATAATCTCCCGCAAGCTCAGCGCCTTCTGCAAGAGATTCACCAGGTTGGCATC
GGTGTTGACGTCGCGGAGCTTGTCAAAGTCGAGGTTCTCAAGCGCCTCAAAGAGTTTGGGGTCCA
ACAACTTGTGGAACACTTTCTGCTCGTCGACCGAGAGCAGTGACGGTAGCGATGGGAGGCCCGTG
GCGGTGGCGGTGGCGTTGGTGCGGTTGGCAATGGCCCCGTGCGCCATGGGCGCGCTGTGTGCATG
GGCACCGGCACTGTGCGCCGCGGCACCGGCACCGGCACTGGGCGCACCGGGGTGGTGTGCACTGG
CACCCACCCGCGGCGGACTGCGCCGTGCCTGGCGCTTCTGTAGCT
Found at i:19208 original size:24 final size:24
Alignment explanation
Indices: 19141--19219 Score: 71
Period size: 24 Copynumber: 3.5 Consensus size: 24
19131 ACTGGTACCG
* * *
19141 GCACTCGCACTTGCGTTCGCGCTC
1 GCACTGGCACCTGCGTTCGCACTC
*
19165 GCACTGGCA-C--CG---GCAATC
1 GCACTGGCACCTGCGTTCGCACTC
19183 GCACTGGCACCTGCGTTCGCACTC
1 GCACTGGCACCTGCGTTCGCACTC
*
19207 GCAATGGCACCTG
1 GCACTGGCACCTG
19220 TGTGTGCACT
Statistics
Matches: 43, Mismatches: 6, Indels: 12
0.70 0.10 0.20
Matches are distributed among these distances:
18 13 0.30
19 1 0.02
21 4 0.09
24 25 0.58
ACGTcount: A:0.15, C:0.39, G:0.27, T:0.19
Consensus pattern (24 bp):
GCACTGGCACCTGCGTTCGCACTC
Left flanking sequence: Indices 18641 -- 19140
GCGGGTCGTCCCAGTGCCGGGGCTCGTGCTCCGGGTGCTGGCACTGGCTGTCGTGGTAGTGGCCG
TCGCGGTGGTCGTCGTCGCCGCCGTCGTCCAGCTCGTCTGCGAGCTCCCGGGCGAGCTGCTCGGA
GAACATCTTCACCCGCGGGTCCACCGGGTGGCCGTCGTCGTCGGGCATCTTGAGGAGCTCCTCGC
GGGCCAGGCGCAGCTCCAGCAACAGCTCCATCATCTCGATGAACAGGTGGCCGTCGTTCTTGAGG
AGGTCCTCGGCGAAGCTCAGGAGGCCCTGCGAGAACTGGCCAAACAGGTCCAGCGGGAGCGTGGG
CGGTGGTGGTGCCACAGGGAGGGTGGTGATGGCGTTGGCGTTGGTGTTGGTTGCATTGGTTGCGT
TGGTGGCAATGGTTGCGTTGGTTGCGTTGGTGGCAATGGCATTGGTGGCATTGGCTGTGCTGGTG
CTTGTGTTCGCACCTGCACTGGCACCGGCACTCGCACTGGTACCG
Right flanking sequence: Indices 19220 -- 19719
TGTGTGCACTCACATCACTCCCATTACCTGCCTGGCCCTCCTGGGCCGCCGTCAAGATCTTGCCC
ATGCTCTGCAAGAACGACATCCCCTTCTCCAACTGCACCTTGTCGGCACGATGGAGATCACGAAT
AATCTCCCGCAAGCTCAGCGCCTTCTGCAAGAGATTCACCAGGTTGGCATCGGTGTTGACGTCGC
GGAGCTTGTCAAAGTCGAGGTTCTCAAGCGCCTCAAAGAGTTTGGGGTCCAACAACTTGTGGAAC
ACTTTCTGCTCGTCGACCGAGAGCAGTGACGGTAGCGATGGGAGGCCCGTGGCGGTGGCGGTGGC
GTTGGTGCGGTTGGCAATGGCCCCGTGCGCCATGGGCGCGCTGTGTGCATGGGCACCGGCACTGT
GCGCCGCGGCACCGGCACCGGCACTGGGCGCACCGGGGTGGTGTGCACTGGCACCCACCCGCGGC
GGACTGCGCCGTGCCTGGCGCTTCTGTAGCTTGTGCTCCTCCTCC
Found at i:19920 original size:15 final size:15
Alignment explanation
Indices: 19902--19934 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
19892 CGTAGTGCGG
19902 GTGGGTGCTGTGCCC
1 GTGGGTGCTGTGCCC
19917 GTGGGTGCTGTGCCC
1 GTGGGTGCTGTGCCC
19932 GTG
1 GTG
19935 CGCCGGGTGC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.00, C:0.24, G:0.48, T:0.27
Consensus pattern (15 bp):
GTGGGTGCTGTGCCC
Left flanking sequence: Indices 19402 -- 19901
GTGTTGACGTCGCGGAGCTTGTCAAAGTCGAGGTTCTCAAGCGCCTCAAAGAGTTTGGGGTCCAA
CAACTTGTGGAACACTTTCTGCTCGTCGACCGAGAGCAGTGACGGTAGCGATGGGAGGCCCGTGG
CGGTGGCGGTGGCGTTGGTGCGGTTGGCAATGGCCCCGTGCGCCATGGGCGCGCTGTGTGCATGG
GCACCGGCACTGTGCGCCGCGGCACCGGCACCGGCACTGGGCGCACCGGGGTGGTGTGCACTGGC
ACCCACCCGCGGCGGACTGCGCCGTGCCTGGCGCTTCTGTAGCTTGTGCTCCTCCTCCAACATGT
GGAACCCGCCAAACAACAACCCGGGCAACGCGTTCAAGTCGTTGATGTCGCGCACCTCGTGGATA
AAGTCGATGATGTCGTCAAAGTGGTTCTCGTAGATCAGGTCCAACTCGTCCTCGATGACGTTGTT
GCGGCGCCCGCAGTACTTGCAGGTGCACCCGCCCCCGTAGTGCGG
Right flanking sequence: Indices 19935 -- 20434
CGCCGGGTGCCCGTGGGCGTCGCGGTCGCGCGACTCGCGCCGGAACAACTCCATGATCAGTTTCT
TGTCGATCTTGACCAACTCCATCTTGTGCTGCTGGTCCAACAGCTCCCAGAACGCCTTCAAGTTC
TCCTGCTCCTGGGCCAGCTCGCGGTCCCACAACCGCTCCGGGCGCCGGGGCTCGTCGTCCAACAG
CTCGACAATGACGTCGCCGTTGGCCGCCTGCTTGATCACCCGCAGCTGGGGGTAGTCGTCGTCGG
GGCGGTGCAAGTGCGCCTCGGGGGCCCGCTTGGTGCGCTTCTTTTTCTTCTTGGCGCCGGCGGGG
GGCGGCGGTGGGGGGGCAGGCACCGCGTCCAGGTACTCGAAATGGACGTCGGCCCCGTTCTTATA
CAGCGCTCGATCACTCATGCGCCTGGTGGGGGTGTGGATGGGGGTCGGGTCTGGTGGTGGAGGTG
CTAATGGCAGGACAAAAAAAATGAAGCAAGGGCGCGTGCACACGA
Found at i:20509 original size:23 final size:25
Alignment explanation
Indices: 20473--20535 Score: 73
Period size: 23 Copynumber: 2.7 Consensus size: 25
20463 ATGGCGGCCT
*
20473 GGTGGTAG-GTAGGGTGG-TGGCTA-
1 GGTGGTAGAG-AGGGTGGTTGGCGAG
20496 GGTGGTAGAGAGGG-GGTTGGCGAG
1 GGTGGTAGAGAGGGTGGTTGGCGAG
20520 GGTGGTAGAG-GGGTGG
1 GGTGGTAGAGAGGGTGG
20536 GTGTTACGCT
Statistics
Matches: 35, Mismatches: 1, Indels: 7
0.81 0.02 0.16
Matches are distributed among these distances:
22 2 0.06
23 20 0.57
24 13 0.37
ACGTcount: A:0.14, C:0.03, G:0.62, T:0.21
Consensus pattern (25 bp):
GGTGGTAGAGAGGGTGGTTGGCGAG
Left flanking sequence: Indices 19973 -- 20472
GCCGGAACAACTCCATGATCAGTTTCTTGTCGATCTTGACCAACTCCATCTTGTGCTGCTGGTCC
AACAGCTCCCAGAACGCCTTCAAGTTCTCCTGCTCCTGGGCCAGCTCGCGGTCCCACAACCGCTC
CGGGCGCCGGGGCTCGTCGTCCAACAGCTCGACAATGACGTCGCCGTTGGCCGCCTGCTTGATCA
CCCGCAGCTGGGGGTAGTCGTCGTCGGGGCGGTGCAAGTGCGCCTCGGGGGCCCGCTTGGTGCGC
TTCTTTTTCTTCTTGGCGCCGGCGGGGGGCGGCGGTGGGGGGGCAGGCACCGCGTCCAGGTACTC
GAAATGGACGTCGGCCCCGTTCTTATACAGCGCTCGATCACTCATGCGCCTGGTGGGGGTGTGGA
TGGGGGTCGGGTCTGGTGGTGGAGGTGCTAATGGCAGGACAAAAAAAATGAAGCAAGGGCGCGTG
CACACGAGCCCGGTGCAGAGGTGAGAGGGGCGTAGATGGCGGCCT
Right flanking sequence: Indices 20536 -- 21035
GTGTTACGCTGGTGGGGTGGTGGGTGTGGGTGTGGTGAGTGTGTTGGAGGTGTGGGTGGGTGCGA
GAATTGACGGGTGTGGTCTCAGATCGGGTTTCGGTGCGACCTCCAGTGACGTACCAAGCGATCTT
TTTTCCGGAGGCAGTAATCCCCGCAATGGGAAGTGGGAGAGGTGGTGTGGGTACGGGGCCGTGGG
GGCTTACGCAGTGGTGGGTGGGGCAATTGGCGTGATTTGGTGGGATCTGGTGGTGTTTGCGTGGG
TGTGTGGGGTGAAGAGGTGTTTAGAGGTGTAGAGGTGTAGAGTGCGGGTAGTTTTTCAGTGTGTG
GTGACAGTATAACCACGGAGGTAGGTGGTGTGGTGGGCACAGGGGTAGCGGGATCGGGCAGGTGC
GTAGTGGGATCGGGTATAGTGGTTGCTGGGTGCATAGACCGCGGCTGTTTTGACTGTGGAGGGGC
TTAGACCCGGTGGTGGTTGTCACTGTTTCAGGGGTCACCTGTGGA
Found at i:21997 original size:21 final size:20
Alignment explanation
Indices: 21973--22026 Score: 81
Period size: 21 Copynumber: 2.6 Consensus size: 20
21963 TTCTCACACA
21973 TACTTCTTCTTTTCCTTCTCC
1 TACTTCTTCTTTTCCTTCT-C
*
21994 TACTCCTTCTTTTCCTTCTC
1 TACTTCTTCTTTTCCTTCTC
*
22014 TACATCTTCTTTT
1 TACTTCTTCTTTT
22027 GGGTTTTTTC
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
20 12 0.40
21 18 0.60
ACGTcount: A:0.07, C:0.35, G:0.00, T:0.57
Consensus pattern (20 bp):
TACTTCTTCTTTTCCTTCTC
Left flanking sequence: Indices 21473 -- 21972
AACTTCGTCTGTTGACCGTTGGATCCACGAATTGAGAACACTTGCATTAGTCACCAGATCCTCTC
AGTGTCGATGTAACTACGACAAGTATTTGTATCCACGTCGATATAGGTGGCTGCCCAATGAGCAG
CAATTTTCTAATGAAAAGTAGCATTCAGGTGCCTTGAAAACTCTTCACTTCGAAGGAATTTGCAT
TGTAATAAAACGCCTAAACGAGACACGAAATACTACTGTAGTCGTATCTTTAGCACAGACACTTT
GGGAAAACTCCTCCCGGTGAAAAATAAAGCTGAATTCTGACGGGATCTGACCACAAATTATCCTA
AATTGTGTGAGGTCAAGGACTGAAACCAACCCCATTGTGCCACAAAACGTTAGACGATGCTTTAG
ACATTCTCGCAATTTGTGATATACCAACGGTTTCCAGCTTTGTGATGCTACCTGCTTCATTCACA
GTATACTTGCTCCCCACATCTAAATTCCCTTTATCTTCTCACACA
Right flanking sequence: Indices 22027 -- 22526
GGGTTTTTTCATTTTCTAACATCAAAACATAGCAAACAGTAGAGTAAACTTGAAAGCAAACTAAA
ACAACCCCCAACGCTTAGTCCTCCCAGTACCACCACACGTCGTGGAGCTCGCCCACGTCCAACGG
AGCAAGCTTCTGGAACGCGTGCTTGGAGAGGTCAAGGTCGTTGTACCCGCAACCGACACACATGT
CCTCAAGCTTCACGCGGATGGCCTTGTTGTTGTAGTTGACAACAATGTAGTGGTTGTCACACATC
CACGCCGAGTTGGGGTCGCCGCCCTTGTACAAGTTGTTCCACAACAGCTCGGAAATGGCAACAAA
GTCCTGGCTGTTGGAGTCGAGGTTGCGACCGCAGGCACCAATGGGGTCGTCGAACCAGGTGATCT
TGCCGTGGGCATCGCCCCATCTCTTGGCAATGGCAGCCTTGTCGTCAACGGGCTGGGCAGCGACG
AGAGCAGTGAAAGTAGAGAGAATAGTGGTAAACTTCATGATTGAT
Found at i:23639 original size:15 final size:14
Alignment explanation
Indices: 23610--23664 Score: 83
Period size: 14 Copynumber: 3.9 Consensus size: 14
23600 AAGATTCAAG
*
23610 ACTCGAACATTTAC
1 ACTCGAAGATTTAC
23624 ACTCGAAGATTTTAC
1 ACTCGAAGA-TTTAC
23639 ACTCGAAGATTTAC
1 ACTCGAAGATTTAC
*
23653 ACCCGAAGATTT
1 ACTCGAAGATTT
23665 CGAGATTTAC
Statistics
Matches: 38, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
14 24 0.63
15 14 0.37
ACGTcount: A:0.35, C:0.24, G:0.13, T:0.29
Consensus pattern (14 bp):
ACTCGAAGATTTAC
Left flanking sequence: Indices 23110 -- 23609
GCGTAAATGATCCAGGCGTCGTAGCTGCTATTGTTTGGCGTCTAAAAGTTGCTCATAACCTGGAC
CCGGTAAGCCGAAATTGGCACTTGGTGCTAACAATAGCCCAAGCCATGTGAATGGGGAGTGTGTT
ACACGCCCCTGGCCCGTTGGGTGTTCTCCGGGGGACCCTGTGGGCTCTTAGCACCCTGAACCAGC
CAAAACTGCTCGTGGTCCGATTAGATGCGAGATCGGCTAAACCGTGGATAGACTGCCTAGACTGG
CAACACAGGCATAAACAAGGTTTTAGCGCCAGCGAAGGTGCCTAAAGTTCCGGTTAAAACTGCCC
GGGCCCGGTAAAGGGGTGGAAGGGGGAAGACGCCACGTCAAGGCCAAGAAATTGCCGCAAACAGC
AGCTGCCGTCATCCACCAGGGCCTTGTCTCTAACTGGCTCAATACCCACCCTACTATGGGGAAAT
TATCACTGAAAATTGATACTCAAAATTAATACCCGAAGATTCAAG
Right flanking sequence: Indices 23665 -- 24164
CGAGATTTACACTCGAGTCTACCATGCCTTACTACGCTTTTATTCAGTCCTTTATCGCTTTATTC
AGTCCTTCTTCGCTTTATTCTGTCCTTCTTCGCTTTATTCTGTCCTTCTTCGCTTTATTCAGTCC
TTCTTCTTGTCCTTATCCTTGTCCTCCACCAACTGCTCCACCAACTTCGTCAACTTGTCGACCCG
CTCGTAGAGCCCGTACATGTCCCACGGCACCCCCTTCTGGCTCGCCTCGTGCACGGGCTGCACCA
CCTCGTCGATCTCCTGTCTGAACTTCTCCAAATCGATGGAAAACTCGGGGTCCTGGCGTTCGCCT
TCCCGCTGCAGCTCCAACGCAAGGGCCACTTCCTCGTTACGCTCACGAATGCCATCCCAAGCCAG
GCCACCGGACACGTCGTATCCGTCCACAAGGTCCCACTGGCAGTCCAACTCGTTGGCATCGTCGG
GCAACCGCTTGTAGCGGTTGTACTGGATGCGGCGAGCGTTGCCAA
Found at i:23664 original size:29 final size:29
Alignment explanation
Indices: 23595--23664 Score: 95
Period size: 29 Copynumber: 2.4 Consensus size: 29
23585 CAAAATTAAT
* *
23595 ACCCGAAGATTCAAGACTCGAACATTTAC
1 ACCCGAAGATTTAACACTCGAACATTTAC
* * *
23624 ACTCGAAGATTTTACACTCGAAGATTTAC
1 ACCCGAAGATTTAACACTCGAACATTTAC
23653 ACCCGAAGATTT
1 ACCCGAAGATTT
23665 CGAGATTTAC
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
29 35 1.00
ACGTcount: A:0.36, C:0.24, G:0.14, T:0.26
Consensus pattern (29 bp):
ACCCGAAGATTTAACACTCGAACATTTAC
Left flanking sequence: Indices 23095 -- 23594
CAGCTGCACAACCCCGCGTAAATGATCCAGGCGTCGTAGCTGCTATTGTTTGGCGTCTAAAAGTT
GCTCATAACCTGGACCCGGTAAGCCGAAATTGGCACTTGGTGCTAACAATAGCCCAAGCCATGTG
AATGGGGAGTGTGTTACACGCCCCTGGCCCGTTGGGTGTTCTCCGGGGGACCCTGTGGGCTCTTA
GCACCCTGAACCAGCCAAAACTGCTCGTGGTCCGATTAGATGCGAGATCGGCTAAACCGTGGATA
GACTGCCTAGACTGGCAACACAGGCATAAACAAGGTTTTAGCGCCAGCGAAGGTGCCTAAAGTTC
CGGTTAAAACTGCCCGGGCCCGGTAAAGGGGTGGAAGGGGGAAGACGCCACGTCAAGGCCAAGAA
ATTGCCGCAAACAGCAGCTGCCGTCATCCACCAGGGCCTTGTCTCTAACTGGCTCAATACCCACC
CTACTATGGGGAAATTATCACTGAAAATTGATACTCAAAATTAAT
Right flanking sequence: Indices 23665 -- 24164
CGAGATTTACACTCGAGTCTACCATGCCTTACTACGCTTTTATTCAGTCCTTTATCGCTTTATTC
AGTCCTTCTTCGCTTTATTCTGTCCTTCTTCGCTTTATTCTGTCCTTCTTCGCTTTATTCAGTCC
TTCTTCTTGTCCTTATCCTTGTCCTCCACCAACTGCTCCACCAACTTCGTCAACTTGTCGACCCG
CTCGTAGAGCCCGTACATGTCCCACGGCACCCCCTTCTGGCTCGCCTCGTGCACGGGCTGCACCA
CCTCGTCGATCTCCTGTCTGAACTTCTCCAAATCGATGGAAAACTCGGGGTCCTGGCGTTCGCCT
TCCCGCTGCAGCTCCAACGCAAGGGCCACTTCCTCGTTACGCTCACGAATGCCATCCCAAGCCAG
GCCACCGGACACGTCGTATCCGTCCACAAGGTCCCACTGGCAGTCCAACTCGTTGGCATCGTCGG
GCAACCGCTTGTAGCGGTTGTACTGGATGCGGCGAGCGTTGCCAA
Found at i:23728 original size:20 final size:20
Alignment explanation
Indices: 23703--23800 Score: 162
Period size: 20 Copynumber: 4.9 Consensus size: 20
23693 TTACTACGCT
23703 TTTATTCAGTCCTT-TATCGC
1 TTTATTCAGTCCTTCT-TCGC
23723 TTTATTCAGTCCTTCTTCGC
1 TTTATTCAGTCCTTCTTCGC
*
23743 TTTATTCTGTCCTTCTTCGC
1 TTTATTCAGTCCTTCTTCGC
*
23763 TTTATTCTGTCCTTCTTCGC
1 TTTATTCAGTCCTTCTTCGC
23783 TTTATTCAGTCCTTCTTC
1 TTTATTCAGTCCTTCTTC
23801 TTGTCCTTAT
Statistics
Matches: 75, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
20 74 0.99
21 1 0.01
ACGTcount: A:0.09, C:0.29, G:0.09, T:0.53
Consensus pattern (20 bp):
TTTATTCAGTCCTTCTTCGC
Left flanking sequence: Indices 23203 -- 23702
TAACAATAGCCCAAGCCATGTGAATGGGGAGTGTGTTACACGCCCCTGGCCCGTTGGGTGTTCTC
CGGGGGACCCTGTGGGCTCTTAGCACCCTGAACCAGCCAAAACTGCTCGTGGTCCGATTAGATGC
GAGATCGGCTAAACCGTGGATAGACTGCCTAGACTGGCAACACAGGCATAAACAAGGTTTTAGCG
CCAGCGAAGGTGCCTAAAGTTCCGGTTAAAACTGCCCGGGCCCGGTAAAGGGGTGGAAGGGGGAA
GACGCCACGTCAAGGCCAAGAAATTGCCGCAAACAGCAGCTGCCGTCATCCACCAGGGCCTTGTC
TCTAACTGGCTCAATACCCACCCTACTATGGGGAAATTATCACTGAAAATTGATACTCAAAATTA
ATACCCGAAGATTCAAGACTCGAACATTTACACTCGAAGATTTTACACTCGAAGATTTACACCCG
AAGATTTCGAGATTTACACTCGAGTCTACCATGCCTTACTACGCT
Right flanking sequence: Indices 23801 -- 24300
TTGTCCTTATCCTTGTCCTCCACCAACTGCTCCACCAACTTCGTCAACTTGTCGACCCGCTCGTA
GAGCCCGTACATGTCCCACGGCACCCCCTTCTGGCTCGCCTCGTGCACGGGCTGCACCACCTCGT
CGATCTCCTGTCTGAACTTCTCCAAATCGATGGAAAACTCGGGGTCCTGGCGTTCGCCTTCCCGC
TGCAGCTCCAACGCAAGGGCCACTTCCTCGTTACGCTCACGAATGCCATCCCAAGCCAGGCCACC
GGACACGTCGTATCCGTCCACAAGGTCCCACTGGCAGTCCAACTCGTTGGCATCGTCGGGCAACC
GCTTGTAGCGGTTGTACTGGATGCGGCGAGCGTTGCCAAGCTCGTACCAGGTGACAAACACCAAC
ATGGGAGCGTACAACACAATCATAAGCACCCGGTTGATCAGCTTGTAGGTGGAATGTGAGGTGAC
GAAGGCAATCGGCGAAATTAACACCTCCACGAGGTTCAACGGAGG
Found at i:25934 original size:9 final size:11
Alignment explanation
Indices: 25902--25938 Score: 65
Period size: 11 Copynumber: 3.4 Consensus size: 11
25892 AGAACGGAGA
25902 AGGGAGAAGAG
1 AGGGAGAAGAG
25913 AGGGAGAAGAG
1 AGGGAGAAGAG
*
25924 AGGGAAAAGAG
1 AGGGAGAAGAG
25935 AGGG
1 AGGG
25939 GGATTATGGG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
11 25 1.00
ACGTcount: A:0.46, C:0.00, G:0.54, T:0.00
Consensus pattern (11 bp):
AGGGAGAAGAG
Left flanking sequence: Indices 25402 -- 25901
CCCGGTGTCCACGAGCTCGGTCTCCGCCAACAGGTTGTACCACCCAGTCACCCGGAGCAAGCAAA
AGATGATCAGGGCCCGGTACTTGTAGCTCAGGGTGTTTTCCTCGCCGTCCCCGTGGCCTCCTGCA
GCCTGCAACGCCAAGTGCACTACGCGCTCGTTCAAAATGAGCGACCCCAGCTTGGTGACCTCGTG
TTCGTCAAACTCCACGGGGATCACCCGGTCAATCAAAAGCTTCAAATTGATGGCGATCCGGAGGG
TCTGGCGCAGATTGGGGCAGTAGGTGCCCGTGAACTGGTGGGGAGCACCCACCTCCAGCAGCTCG
ACGTCCAGGGCCATGAATTGCGCCAGGGTGGTCATCGTCCAGATGGTTGCTGTTGCCAATGGCTC
GGATAGGAAGAATAGCTGGGTCTCGGGGTGCGCGCACGGTGCGTGGTCGGTGCGTCGGAGGTGCG
CGTCATGCAGGGAGGCACGGCGATGAGAAAGTAGGAGAACGGAGA
Right flanking sequence: Indices 25939 -- 26438
GGATTATGGGTATATGTGGATGGTTTGGTGCTACGGAGTGGTGTTATCGTGATCATCTTTGGATC
AGTGCTTCTGCCGTTCCCTTTCCAGGTTTGGCTAGATTGCGTGAAGAATGCTCCTCAGCGGGGTA
CCTGAAACGAGGCTAAGCCTTCCACACGTAGTTGACAGGAGACGGGTCAGGGAAGCGATCTCTGG
CGTGGTATGGAACGATTGTAGCGCTGGAGACAGGGTGATATGTTAGGGGTTGGTCTAAACTTTTA
AGGGTTGGACAAACTTTAGACGGCCATCGTCTTGGTAGTAGAGACCGACGAATGTCGATAAAATC
GCAAAACTGAGGGTCGAATTTCGACTTTGCCGAAGACGAACCAGTACTCGCCCATCAATGCTCCC
ATGACAACCGTTACGACTCGTAATTATTCGACCCCCTACCGTCGTGACACCGTTATCCTGTGATT
GTACTGGCAGTGACTGAACACCTCGGAGTCTGTTGCGAAGACAAC
Found at i:26726 original size:18 final size:18
Alignment explanation
Indices: 26696--26807 Score: 163
Period size: 18 Copynumber: 6.2 Consensus size: 18
26686 TCAGACACGA
26696 ACTCAGTGTCCAGCATTGT
1 ACTC-GTGTCCAGCATTGT
*
26715 AC-CAGTGCCCAGCATTGT
1 ACTC-GTGTCCAGCATTGT
*
26733 ACTCGTGTCCAGCGTTGT
1 ACTCGTGTCCAGCATTGT
*
26751 ACTCGTGTCCAGCGTTGT
1 ACTCGTGTCCAGCATTGT
*
26769 ACTCGTGTCCAGCGTTGT
1 ACTCGTGTCCAGCATTGT
26787 ACTCGTGTCCAGCATTGT
1 ACTCGTGTCCAGCATTGT
26805 ACT
1 ACT
26808 GCTGTTGACC
Statistics
Matches: 88, Mismatches: 4, Indels: 3
0.93 0.04 0.03
Matches are distributed among these distances:
18 85 0.97
19 3 0.03
ACGTcount: A:0.16, C:0.29, G:0.24, T:0.31
Consensus pattern (18 bp):
ACTCGTGTCCAGCATTGT
Left flanking sequence: Indices 26196 -- 26695
TTAAGGGTTGGACAAACTTTAGACGGCCATCGTCTTGGTAGTAGAGACCGACGAATGTCGATAAA
ATCGCAAAACTGAGGGTCGAATTTCGACTTTGCCGAAGACGAACCAGTACTCGCCCATCAATGCT
CCCATGACAACCGTTACGACTCGTAATTATTCGACCCCCTACCGTCGTGACACCGTTATCCTGTG
ATTGTACTGGCAGTGACTGAACACCTCGGAGTCTGTTGCGAAGACAACGATTTACGAGAATAAGG
CGATAATTGCGGTTCTGTGTCAGGAACACACCCAGAGTGGTGAGATCGTCACAGGGGTTTGCTCC
TTGCTCCTTGGTAGTTCCAGAGTCTGTCTGAAGCCACACGAAGGAGGTAGCCAAGAAATACACCG
GCTCCGCGACCATTGTCTGTCTACGCCAATGTCACGGTGGCCAAGCACCACAACTATAGCCGTAA
ACACCCTCGACGCGCTCATTGTCACTTACGCGTCGTCAGACACGA
Right flanking sequence: Indices 26808 -- 27307
GCTGTTGACCAGCCACGCGTGAGAGGCTACCGCATCCGGCAGTTAGACATCATCACAGGCACGTC
GTATTTGCTTCTGTTCTCGTCGAAAGTTTTTGTATTACGTCAGCATCGGTTACGCTGGTTCCCCT
CAACACCGACGCCATAGGTCAGGCGCACCCGACGGGAGCGGTACCCCAGTTCCTCAAACGGGGAT
CGTGCGGGCTGTGATGACGTCCTTCTGTGCTATTGTTCTATTGTTGGCTTTCGACACAAGGCGGG
ATCCGGTCCTATTCGAGGCAGCCCGCGTGCTTTTTTAGTCATCGGGCTAGCGTAGGCACCCCTGA
GCCTCTCGGTCGGCGCTCCTGCCGTCGCTGTGACGTGAATGTCCACGCTGGGCAGGCACGCCGTA
ACACGTCGGCCAAGGACTGGAGTGATCCGGTTGGGGGGCGGGGATCGCGCCACCGGTGGCGTGGC
CAAACAAGCTCTGACACAATCTAGAGATACGAGTGGGCAACCCTG
Found at i:28024 original size:10 final size:10
Alignment explanation
Indices: 28009--28045 Score: 74
Period size: 10 Copynumber: 3.7 Consensus size: 10
27999 CCAAAGCCCG
28009 TACCAAACAC
1 TACCAAACAC
28019 TACCAAACAC
1 TACCAAACAC
28029 TACCAAACAC
1 TACCAAACAC
28039 TACCAAA
1 TACCAAA
28046 GAACTTTACT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 27 1.00
ACGTcount: A:0.51, C:0.38, G:0.00, T:0.11
Consensus pattern (10 bp):
TACCAAACAC
Left flanking sequence: Indices 27509 -- 28008
GGCCCAATCGGGAAATAAATCGTGCAGCCCCGTTTGTGTCACCATCGCGGTAGCACACCGTTTGG
GACGAGCGTGCTCTAAGTTGGGCCACCCCAGGTTTTAGTGGCGCCTGTTTCGGGGTGGAACGACG
GCTCCGTCGGGTTTCACACGAGGAAACCCGTCGCAACCTCGAGGTGAAAAATATCCCCGCAGGAA
CGCCCAACGGCTGCAAAATGACGTGATGGTGATGGAGCATGAATGGCGAAGAACGAGGGTGACGG
GATGACGTACAGAAGTGCTTGTGTGTGTGTTGCGGTGCTGGATGCGTTCCGTGGAGTTCTGGGCC
CGATTGGACGCGTTGTACCGGTGATTCCACCACGTTGCGATCGTCATGGCACCTGCGTTTCATCT
GGCCCGCGGGCAGTAGCCCGGGCGGTGCCTGGAACCCAGAAACGCAGCAGCACCAGGTAACAGAA
GCCGTGCTACATGTACGAAAGCACGGTTACACAGCCCAAAGCCCG
Right flanking sequence: Indices 28046 -- 28545
GAACTTTACTAGAGACCACAGATTCCACAGACTCCCCATTCAACCGCCCTTCCCCTTATCAGCTC
CTCTTCATCTCCTCCTTCTCACCTCCTTCCCATCTCATACCCAGTATAGCACGACTTTTCTCCAC
TCCTGAAACTACCCCTGAATTCTTCCACCGACCCGAATAGCCCACTAACAGAAACTAACCCGCGT
CTAACCCGCCACTAACCCACGACTAACTACTAATCCATTACTAACCCACTAACGCACCCACAACC
GCCTCCACAACCTTCACTCATCTCCCCTTACCCATCTCCCTCCACTCATCTACCCTTACTCATCA
CTACGTACCATAAAACCTACACACCAAAACCACCACCGCACCACACTACCACAACCACTACCAAG
CACTCCCCGCCGCCGGCTACAGTTGCCGTGCTGCCCCCGTCCGCCTTGTGCCGTCCAAGCAACCG
GTCGCGTCCGTGGCGGGCCCGCTGCATAGCGCGATAAGCAAACAT
Found at i:28265 original size:11 final size:11
Alignment explanation
Indices: 28229--28267 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
28219 ACTAACAGAA
28229 ACTAACCCGCG
1 ACTAACCCGCG
* *
28240 TCTAACCCGCC
1 ACTAACCCGCG
*
28251 ACTAACCCACG
1 ACTAACCCGCG
28262 ACTAAC
1 ACTAAC
28268 TACTAATCCA
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
11 23 1.00
ACGTcount: A:0.31, C:0.46, G:0.10, T:0.13
Consensus pattern (11 bp):
ACTAACCCGCG
Left flanking sequence: Indices 27729 -- 28228
ATGGTGATGGAGCATGAATGGCGAAGAACGAGGGTGACGGGATGACGTACAGAAGTGCTTGTGTG
TGTGTTGCGGTGCTGGATGCGTTCCGTGGAGTTCTGGGCCCGATTGGACGCGTTGTACCGGTGAT
TCCACCACGTTGCGATCGTCATGGCACCTGCGTTTCATCTGGCCCGCGGGCAGTAGCCCGGGCGG
TGCCTGGAACCCAGAAACGCAGCAGCACCAGGTAACAGAAGCCGTGCTACATGTACGAAAGCACG
GTTACACAGCCCAAAGCCCGTACCAAACACTACCAAACACTACCAAACACTACCAAAGAACTTTA
CTAGAGACCACAGATTCCACAGACTCCCCATTCAACCGCCCTTCCCCTTATCAGCTCCTCTTCAT
CTCCTCCTTCTCACCTCCTTCCCATCTCATACCCAGTATAGCACGACTTTTCTCCACTCCTGAAA
CTACCCCTGAATTCTTCCACCGACCCGAATAGCCCACTAACAGAA
Right flanking sequence: Indices 28268 -- 28767
TACTAATCCATTACTAACCCACTAACGCACCCACAACCGCCTCCACAACCTTCACTCATCTCCCC
TTACCCATCTCCCTCCACTCATCTACCCTTACTCATCACTACGTACCATAAAACCTACACACCAA
AACCACCACCGCACCACACTACCACAACCACTACCAAGCACTCCCCGCCGCCGGCTACAGTTGCC
GTGCTGCCCCCGTCCGCCTTGTGCCGTCCAAGCAACCGGTCGCGTCCGTGGCGGGCCCGCTGCAT
AGCGCGATAAGCAAACATCCTTTATATAGTGACATCGCCTAGGCAGGCCCCAGGCTGGGCTAACC
GGTGCATAGCTATTGTTAGACTGCATAGGCATCGGTCGTCCTGTTCTCACCGCCGTTTGCACCGC
TCACACCGTTTTGTTCACGTTTTGTCGGTGCTGTCTGAGCCTTCTTCCGTCTGATTTTTCAAAGC
ACGCCTCCGCCACCCGCTACGCGTCAACAGCTGAGGTTCGGAATT
Found at i:29053 original size:11 final size:11
Alignment explanation
Indices: 29039--29074 Score: 72
Period size: 11 Copynumber: 3.3 Consensus size: 11
29029 ACTGCACTAG
29039 CACTGCACCCA
1 CACTGCACCCA
29050 CACTGCACCCA
1 CACTGCACCCA
29061 CACTGCACCCA
1 CACTGCACCCA
29072 CAC
1 CAC
29075 CACACTAGCA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 25 1.00
ACGTcount: A:0.28, C:0.56, G:0.08, T:0.08
Consensus pattern (11 bp):
CACTGCACCCA
Left flanking sequence: Indices 28539 -- 29038
CAAACATCCTTTATATAGTGACATCGCCTAGGCAGGCCCCAGGCTGGGCTAACCGGTGCATAGCT
ATTGTTAGACTGCATAGGCATCGGTCGTCCTGTTCTCACCGCCGTTTGCACCGCTCACACCGTTT
TGTTCACGTTTTGTCGGTGCTGTCTGAGCCTTCTTCCGTCTGATTTTTCAAAGCACGCCTCCGCC
ACCCGCTACGCGTCAACAGCTGAGGTTCGGAATTTGATTAGAACCAGGTGAAACACCGCCCTACC
CTGAGCACTCGCATCGCCCGCGACTTGAAACAACCCAGTCGCCGTGACCCGTGGCTCCCATCTCC
CACCGTTAGCACCCGTGCCTGTGTTTATTAGCACGGCTAACCCAGACTATCCGATAAGCGCTGTC
TACGCGTTGAGAGGACACCTGTGACCCAGATCAAGCATTGTTGGAGAGACCGTGCCGTACTGCTA
CGCCACGACTACCAACCACCAGCACCAGTACCAGCACTGCACTAG
Right flanking sequence: Indices 29075 -- 29574
CACACTAGCACTGTTACAGTCGCCAGTCTGTCAAGTCTCCAGTCTGTCAAGTCGCCAGTGTCAAA
GCTAGTCTGTCAAAGTAACAGACGACCACCACGCTAGTCACCCAGCCACCACTGCTACCACTGCT
AGCTACCACTGCCAGTCTCTGCCAGTATCTGCCAGTACCACTGCACTAGCCACCACTACCCTCCA
CCACCCTTGATTTCTAGTATGACCACCTACACCGAGATGGCCCCGCTGTGCTTGGACCCCAAGAC
ACGGCCCCAGGGCCCCGCTCCGCGCTCGTACTACACCACCACCACCACCTCGCACCGCAAACCGC
CCCCCGACGACGACCTGGGCCTCGATCTCGAGCTCGACTTGGGCCTGTCGCTCGACGCCGACCTC
GGGTTCAGCGACTATTTGCTCGGGTCGCTGCCCCAGCTGGTGTACCGCAACGAGCACGGGCTGAC
GCTGGGCCCGCTCCCCCACCCCGACGACGACCTCGTCGACTCTCC
Found at i:29054 original size:22 final size:22
Alignment explanation
Indices: 29028--29087 Score: 77
Period size: 22 Copynumber: 2.7 Consensus size: 22
29018 CCAGTACCAG
29028 CACTGCACTAGCACTGCACCCA
1 CACTGCACTAGCACTGCACCCA
*
29050 CACTGCACCCA-CACTGCACCCA
1 CACTGCA-CTAGCACTGCACCCA
**
29072 CACCACACTAGCACTG
1 CACTGCACTAGCACTG
29088 TTACAGTCGC
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
21 2 0.06
22 28 0.88
23 2 0.06
ACGTcount: A:0.28, C:0.48, G:0.12, T:0.12
Consensus pattern (22 bp):
CACTGCACTAGCACTGCACCCA
Left flanking sequence: Indices 28528 -- 29027
AGCGCGATAAGCAAACATCCTTTATATAGTGACATCGCCTAGGCAGGCCCCAGGCTGGGCTAACC
GGTGCATAGCTATTGTTAGACTGCATAGGCATCGGTCGTCCTGTTCTCACCGCCGTTTGCACCGC
TCACACCGTTTTGTTCACGTTTTGTCGGTGCTGTCTGAGCCTTCTTCCGTCTGATTTTTCAAAGC
ACGCCTCCGCCACCCGCTACGCGTCAACAGCTGAGGTTCGGAATTTGATTAGAACCAGGTGAAAC
ACCGCCCTACCCTGAGCACTCGCATCGCCCGCGACTTGAAACAACCCAGTCGCCGTGACCCGTGG
CTCCCATCTCCCACCGTTAGCACCCGTGCCTGTGTTTATTAGCACGGCTAACCCAGACTATCCGA
TAAGCGCTGTCTACGCGTTGAGAGGACACCTGTGACCCAGATCAAGCATTGTTGGAGAGACCGTG
CCGTACTGCTACGCCACGACTACCAACCACCAGCACCAGTACCAG
Right flanking sequence: Indices 29088 -- 29587
TTACAGTCGCCAGTCTGTCAAGTCTCCAGTCTGTCAAGTCGCCAGTGTCAAAGCTAGTCTGTCAA
AGTAACAGACGACCACCACGCTAGTCACCCAGCCACCACTGCTACCACTGCTAGCTACCACTGCC
AGTCTCTGCCAGTATCTGCCAGTACCACTGCACTAGCCACCACTACCCTCCACCACCCTTGATTT
CTAGTATGACCACCTACACCGAGATGGCCCCGCTGTGCTTGGACCCCAAGACACGGCCCCAGGGC
CCCGCTCCGCGCTCGTACTACACCACCACCACCACCTCGCACCGCAAACCGCCCCCCGACGACGA
CCTGGGCCTCGATCTCGAGCTCGACTTGGGCCTGTCGCTCGACGCCGACCTCGGGTTCAGCGACT
ATTTGCTCGGGTCGCTGCCCCAGCTGGTGTACCGCAACGAGCACGGGCTGACGCTGGGCCCGCTC
CCCCACCCCGACGACGACCTCGTCGACTCTCCCGAGTTAGGAGCC
Found at i:29116 original size:16 final size:16
Alignment explanation
Indices: 29092--29133 Score: 75
Period size: 16 Copynumber: 2.6 Consensus size: 16
29082 GCACTGTTAC
29092 AGTCGCCAGTCTGTCA
1 AGTCGCCAGTCTGTCA
*
29108 AGTCTCCAGTCTGTCA
1 AGTCGCCAGTCTGTCA
29124 AGTCGCCAGT
1 AGTCGCCAGT
29134 GTCAAAGCTA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.19, C:0.31, G:0.24, T:0.26
Consensus pattern (16 bp):
AGTCGCCAGTCTGTCA
Left flanking sequence: Indices 28592 -- 29091
CGGTGCATAGCTATTGTTAGACTGCATAGGCATCGGTCGTCCTGTTCTCACCGCCGTTTGCACCG
CTCACACCGTTTTGTTCACGTTTTGTCGGTGCTGTCTGAGCCTTCTTCCGTCTGATTTTTCAAAG
CACGCCTCCGCCACCCGCTACGCGTCAACAGCTGAGGTTCGGAATTTGATTAGAACCAGGTGAAA
CACCGCCCTACCCTGAGCACTCGCATCGCCCGCGACTTGAAACAACCCAGTCGCCGTGACCCGTG
GCTCCCATCTCCCACCGTTAGCACCCGTGCCTGTGTTTATTAGCACGGCTAACCCAGACTATCCG
ATAAGCGCTGTCTACGCGTTGAGAGGACACCTGTGACCCAGATCAAGCATTGTTGGAGAGACCGT
GCCGTACTGCTACGCCACGACTACCAACCACCAGCACCAGTACCAGCACTGCACTAGCACTGCAC
CCACACTGCACCCACACTGCACCCACACCACACTAGCACTGTTAC
Right flanking sequence: Indices 29134 -- 29633
GTCAAAGCTAGTCTGTCAAAGTAACAGACGACCACCACGCTAGTCACCCAGCCACCACTGCTACC
ACTGCTAGCTACCACTGCCAGTCTCTGCCAGTATCTGCCAGTACCACTGCACTAGCCACCACTAC
CCTCCACCACCCTTGATTTCTAGTATGACCACCTACACCGAGATGGCCCCGCTGTGCTTGGACCC
CAAGACACGGCCCCAGGGCCCCGCTCCGCGCTCGTACTACACCACCACCACCACCTCGCACCGCA
AACCGCCCCCCGACGACGACCTGGGCCTCGATCTCGAGCTCGACTTGGGCCTGTCGCTCGACGCC
GACCTCGGGTTCAGCGACTATTTGCTCGGGTCGCTGCCCCAGCTGGTGTACCGCAACGAGCACGG
GCTGACGCTGGGCCCGCTCCCCCACCCCGACGACGACCTCGTCGACTCTCCCGAGTTAGGAGCCC
CGTCCGCGACTAAGGCCAAGGCTCCTAACTCGATGCTCCTAACCG
Found at i:29696 original size:15 final size:15
Alignment explanation
Indices: 29645--29688 Score: 79
Period size: 15 Copynumber: 2.9 Consensus size: 15
29635 AGACACTCAG
*
29645 GCCCACCCTGAGCAC
1 GCCCACCCCGAGCAC
29660 GCCCACCCCGAGCAC
1 GCCCACCCCGAGCAC
29675 GCCCACCCCGAGCA
1 GCCCACCCCGAGCA
29689 GACGCACCAC
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
15 28 1.00
ACGTcount: A:0.20, C:0.57, G:0.20, T:0.02
Consensus pattern (15 bp):
GCCCACCCCGAGCAC
Left flanking sequence: Indices 29145 -- 29644
TCTGTCAAAGTAACAGACGACCACCACGCTAGTCACCCAGCCACCACTGCTACCACTGCTAGCTA
CCACTGCCAGTCTCTGCCAGTATCTGCCAGTACCACTGCACTAGCCACCACTACCCTCCACCACC
CTTGATTTCTAGTATGACCACCTACACCGAGATGGCCCCGCTGTGCTTGGACCCCAAGACACGGC
CCCAGGGCCCCGCTCCGCGCTCGTACTACACCACCACCACCACCTCGCACCGCAAACCGCCCCCC
GACGACGACCTGGGCCTCGATCTCGAGCTCGACTTGGGCCTGTCGCTCGACGCCGACCTCGGGTT
CAGCGACTATTTGCTCGGGTCGCTGCCCCAGCTGGTGTACCGCAACGAGCACGGGCTGACGCTGG
GCCCGCTCCCCCACCCCGACGACGACCTCGTCGACTCTCCCGAGTTAGGAGCCCCGTCCGCGACT
AAGGCCAAGGCTCCTAACTCGATGCTCCTAACCGGAGACACTCAG
Right flanking sequence: Indices 29689 -- 30188
GACGCACCACCACACCCGCCGCAGACCGGGCGAGCCGCTCATCCACACCGGCACCAACGTGCTGC
AGCACCTGGCCCGCTCGCACGGCACCCACGGCACCCACAAGACCGCGTACACCGAGTACTCGGGG
TACCTGGCGGCCACGGGCGCCACCCGGGCCACCAACAAGACGTCCGCCACCACCTACACGCAAAA
GACCCACGCCACCGCCGCCACCGCGTTCTCGCGCACCCAGGTGGCGGTGCTGGGGCTCAAACGCA
AGCTCAAGCGCTACCTGCTCTTCACGAAGGAACGCGAGGCTCAGGAGGGCTACCCGAGCACCAGA
GACTCGTCCGACGCCCCCGTGCCCGAGCTCTCGCGCCTCCTGGTGCAGGAGCTGCGCGACGACCC
GGACCACCCGCTGAAACGGTTCCTGTTTGGCCTGGCGCTCAAACGGATCAAGCTGAACCGGCTGA
TGCGGTTCATCAACGACAACTTCATCCAGGAGCCGCGGGCGCTGA
Found at i:31480 original size:19 final size:19
Alignment explanation
Indices: 31458--31506 Score: 98
Period size: 19 Copynumber: 2.6 Consensus size: 19
31448 GTGGATGTAG
31458 AGTCAGCCAGTGGGCTCTA
1 AGTCAGCCAGTGGGCTCTA
31477 AGTCAGCCAGTGGGCTCTA
1 AGTCAGCCAGTGGGCTCTA
31496 AGTCAGCCAGT
1 AGTCAGCCAGT
31507 TGGCACCGTT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 30 1.00
ACGTcount: A:0.22, C:0.27, G:0.31, T:0.20
Consensus pattern (19 bp):
AGTCAGCCAGTGGGCTCTA
Left flanking sequence: Indices 30958 -- 31457
GGACGACGACGACGACGAGTCGCACGGCGAGTTGTGGTACCGCGACCCGGACCCGGCGCTGATCG
CGGTGGAGCGCGACACCCCGTTCCCGCCGGTGTTGGCGGTGTACCGCCCGCACAACCCGCGGATC
CGCCGCAAGTTGGCGCTGCTGTTTGCCAAGAACCGGCGGGTGGGCGCTCCCGGGGTGGTCAACGC
CAAGTTCCGGCTGCTGGAGCTCGCCGAGGACCTTGGCGCCGGGCTGGGGGTGGACAACTACTACG
CGGGCGGCGACGGGCTCTACTTTGTCGAGAACCCCAGCGACGACCTGCCCGACGACGACAAGCTC
GGGTGGATCACCGTGTACGAGGACACGCGGGTGTTTGGCAGCCACAACAAGGGGATGTTTGACAT
GGTGGTGGGGTTGACGTTGGCCGCGGGCCTCGACGCGAGCCCGGTGTGAGCTGTGCGGGGTGTTC
GAACCATGTTTGGGTCATTGAGCCTGGTGAACCGGGTGGATGTAG
Right flanking sequence: Indices 31507 -- 32006
TGGCACCGTTTGAAACGCAATACCTGCTTATGAAGTCAGGATATATAGTCATATGAACATAATAC
CAATGCAATAAACGTAATCGAAGACCGGAGCACCTAGCCTGGCTGGGGGGCCGCAGGCGGCGCCC
CCCAGACCCCCCAACGCTTTCTGATTCTCAGGCCGTTGAGGTATTTCTCGCGGTGTTGGTGCGAT
CCGCAGTTTGGTTGCAAAAAGCCCGTTTGGAATTCGGAATGGGCCTTCGGGCAAAAGCAAGTCTA
TGGGTTGTTTCCTTGGTTATTCTGCTGATTGTTTTGTGGATTTTCTGCTGATTCGACAGGTTTTA
GAATTTCATTGGGTCTTTCTCTGATTCGATCCGAGCGATCGATGTTTCATTTATTCCATGGGCAT
ATTATGACCTCACCAGTTGCGACGAGAATGTTGGCTCATTCTCAACACTACGAAATGCCCAATGC
TATTGACTACACTGTGGTTGGCCCAGTTTTGCCGTGCCAGGGGTG
Found at i:32909 original size:35 final size:36
Alignment explanation
Indices: 32787--32971 Score: 173
Period size: 36 Copynumber: 5.3 Consensus size: 36
32777 GGCCACAACT
* * * * *
32787 GCTGAAATGGTTGCACATGGTCACAATTCAAACGCA
1 GCTGAAATGGTTGCAAATGGCCACAACTCAAAAGCG
* * * * * * *
32823 GCTAAAATGGTTGCAATTAGTCTCAATTTAAAAGCG
1 GCTGAAATGGTTGCAAATGGCCACAACTCAAAAGCG
* *
32859 GCTCAAATGGCTGCAAATGGCCACAACTCAAAAG-G
1 GCTGAAATGGTTGCAAATGGCCACAACTCAAAAGCG
* * *
32894 GCTGAAATGGTTGCAATTGGCCACAACTTATAAG-G
1 GCTGAAATGGTTGCAAATGGCCACAACTCAAAAGCG
*
32929 GCTAAAATGGTTGCAAAT-GCCAC--CTCAAAAGCG
1 GCTGAAATGGTTGCAAATGGCCACAACTCAAAAGCG
32962 GCTGAAATGG
1 GCTGAAATGG
32972 CAAAACTCAA
Statistics
Matches: 122, Mismatches: 26, Indels: 5
0.80 0.17 0.03
Matches are distributed among these distances:
32 6 0.05
33 10 0.08
34 5 0.04
35 47 0.39
36 54 0.44
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.22
Consensus pattern (36 bp):
GCTGAAATGGTTGCAAATGGCCACAACTCAAAAGCG
Left flanking sequence: Indices 32287 -- 32786
TTCAACGTCGACCGTCGCTATCTACGACGTTTATATTGCTCATACGTGGCTCAACGTGACGACCG
GGTAGTTTGAGCCGAGGCTTGCAAGATGGTGAGTGCATTGGAAACCACGGCTACGAACCCAACCA
AAAAATAGAAAGTGGCATCTAGTTGACTTAGCTACCATTAAAACTTCATTAAAAACTTCAAATAT
TACTGAGAGCTTCAACGCCGAGGAGATTCTTTCTTGATCGGGTACCCTGAATTTTAAATAAATAG
ATTTTCAAAAATTCAAACACTCCCGGTACTCGGGCCTCTGGGCAACAAACAGCTATTTTCCATCC
ACATGTGTGAGGTGCGTCTTTCTCTCCTTCCCTGATTTTTTTCTCTACACGGTGGCTGCGTGGCT
GCGTTATGACTGCGCTATGGCTGCAAATGGCTGCAAATGGTCACAGTTCAAAAGCGGCTGAACTG
GCTGCAAATGGTCACTACTCAAGATTGGCTAAAATGGCCACAACT
Right flanking sequence: Indices 32972 -- 33471
CAAAACTCAAAAGGCTGAAATGTTGCAAATGGCCACCTCTGACATGGTTGCAAAACTGTAACAAA
ATCGCCACCTACTCAATACCTTCATTTGTTATTAATATACACGCGGTTTAACGCAAGTAGTCGCG
CAAGTACGACCCCAACTTGGTGGCGCCCTCCTCCAACGCATCCTTCAACACGTCCAAGTCCTGGC
CGGCGTTGCCCGAAAACCGCAGGGCAAACTCCCGGGCCTGCAGCTCGATGTCCTGCAAATTGAGC
AGCCCCAGCGCCGCCCGCCCTCTAGGCTGGTCGGGCTCGCCAAAGTACAGCTGCGACGAGATCAG
CTGGGCGCCGTTGAACAGCTGCAACTTCAGCTGGGCCTCGCGGCGCGCGTCCTCGTCAAACCGCG
GCCCCCGCCCAAAGAACTCGTCGGACGAGATCCCCTTCTGGGTGCCGTACTTCAGCGACACCTCC
CCGGTGTACTTGACCTCCTTGTACTGCTTCTTGGGGCCCTGGTCC
Found at i:35449 original size:25 final size:23
Alignment explanation
Indices: 35421--35523 Score: 66
Period size: 23 Copynumber: 4.3 Consensus size: 23
35411 CACTACAACT
*
35421 ACCATCATACACCACTACCCATCTA
1 ACCATCATACACCAC--CACATCTA
* * *
35446 ACCACCTTACACCACCATATCTA
1 ACCATCATACACCACCACATCTA
* *
35469 ACCATCAT-CTACCTCCATATCTA
1 ACCATCATAC-ACCACCACATCTA
*
35492 ACCA-CAATCCACCACCACCGTATCTA
1 ACCATC-ATACACCACCA-C--ATCTA
35518 ACCATC
1 ACCATC
35524 CACCCATACC
Statistics
Matches: 62, Mismatches: 9, Indels: 12
0.75 0.11 0.14
Matches are distributed among these distances:
22 2 0.03
23 36 0.58
24 1 0.02
25 13 0.21
26 9 0.15
27 1 0.02
ACGTcount: A:0.34, C:0.44, G:0.01, T:0.21
Consensus pattern (23 bp):
ACCATCATACACCACCACATCTA
Left flanking sequence: Indices 34921 -- 35420
CTGTGAGGAAGATTTTGATTGACTTCTGTAGAGATTTCTCTCGCTTCGTTACCGCATTAAAGTGA
CGAATCTGAGAAACGTCAATGGTTAGGGTCCTGTCAACTAAAAGGGTTCAATTGAGACAGTTGAG
GCGTGGGTTGATTGGTTGGTGTCTATGGTTTATGTGGATGGTAAGGTTGGTTACCTAGTAGTGTT
GTTTTTCACACCCATTTTCTAAATTCGAGTCATCAGCAGTGTACGTCTATCGTGTCTTCCGTCAA
CTCTACGACGGTCAAAATCACAACACTAAACAAATCAATTGTGGCTTGGTATCTATTGCCTTATC
CAAACAATTGTTTTGCCAAATCGTCTCCGTCGCCCTTTTGTCCCATTTTCAGCATTTTTGTACCA
TTCTTGCAAAATCAAAGAATCCACCAAACTGAAAAGAAAACTTCATTCAAACTCAAACCAATATC
ACCACTAATCTACACAACCTCACAATACCCACCATCACTACAACT
Right flanking sequence: Indices 35524 -- 36023
CACCCATACCCTCCCACACTCTTCCTTCTCTATCTGTGCAATTCATTATATACATAAATGAGGCC
GGGGCCTGGGGACTAGTGGAAGGGACGCGACCCGCCACGGGCAAACTCAATCACCTTCCACCCGT
CGGTGGTCTTGTTGTCAAACTCCTCGGGGATCCGCGTGAACACCATGGCGTACGTCAGCATCTGG
ATGTTGTCCTCGGTACCGGCAGCGATCTCGCCGTCCTTTTTGCGGTACAAGTGGATCTCCTGGGC
CCGGCACAGCGCCACAATCACGGGGGTGTCGTTGGGCTGCAACATCTTGCAGGTGACAATGTCCA
CCCCGCGGATGTCCTGGATCTTCAGGTCGGAAAACAACCCCTGCTCGACAAACTGCTTGTTGTTG
GCCTGCCACACGTTGAACGGCGCCTCGGAAAACCACTCCTTGAGCACCGCCTCGTCGTTCTTGAG
GTACGCCTCCACGAGCTCGGGCACAATGTAGTTGACAAGCGTCTT
Found at i:35471 original size:23 final size:23
Alignment explanation
Indices: 35441--35508 Score: 75
Period size: 23 Copynumber: 3.0 Consensus size: 23
35431 ACCACTACCC
*
35441 ATCTAACCACCTTAC-ACCACCAT
1 ATCTAACCACCAT-CTACCACCAT
* *
35464 ATCTAACCATCATCTACCTCCAT
1 ATCTAACCACCATCTACCACCAT
* *
35487 ATCTAACCACAATCCACCACCA
1 ATCTAACCACCATCTACCACCA
35509 CCGTATCTAA
Statistics
Matches: 37, Mismatches: 7, Indels: 2
0.80 0.15 0.04
Matches are distributed among these distances:
22 1 0.03
23 36 0.97
ACGTcount: A:0.35, C:0.43, G:0.00, T:0.22
Consensus pattern (23 bp):
ATCTAACCACCATCTACCACCAT
Left flanking sequence: Indices 34941 -- 35440
GACTTCTGTAGAGATTTCTCTCGCTTCGTTACCGCATTAAAGTGACGAATCTGAGAAACGTCAAT
GGTTAGGGTCCTGTCAACTAAAAGGGTTCAATTGAGACAGTTGAGGCGTGGGTTGATTGGTTGGT
GTCTATGGTTTATGTGGATGGTAAGGTTGGTTACCTAGTAGTGTTGTTTTTCACACCCATTTTCT
AAATTCGAGTCATCAGCAGTGTACGTCTATCGTGTCTTCCGTCAACTCTACGACGGTCAAAATCA
CAACACTAAACAAATCAATTGTGGCTTGGTATCTATTGCCTTATCCAAACAATTGTTTTGCCAAA
TCGTCTCCGTCGCCCTTTTGTCCCATTTTCAGCATTTTTGTACCATTCTTGCAAAATCAAAGAAT
CCACCAAACTGAAAAGAAAACTTCATTCAAACTCAAACCAATATCACCACTAATCTACACAACCT
CACAATACCCACCATCACTACAACTACCATCATACACCACTACCC
Right flanking sequence: Indices 35509 -- 36008
CCGTATCTAACCATCCACCCATACCCTCCCACACTCTTCCTTCTCTATCTGTGCAATTCATTATA
TACATAAATGAGGCCGGGGCCTGGGGACTAGTGGAAGGGACGCGACCCGCCACGGGCAAACTCAA
TCACCTTCCACCCGTCGGTGGTCTTGTTGTCAAACTCCTCGGGGATCCGCGTGAACACCATGGCG
TACGTCAGCATCTGGATGTTGTCCTCGGTACCGGCAGCGATCTCGCCGTCCTTTTTGCGGTACAA
GTGGATCTCCTGGGCCCGGCACAGCGCCACAATCACGGGGGTGTCGTTGGGCTGCAACATCTTGC
AGGTGACAATGTCCACCCCGCGGATGTCCTGGATCTTCAGGTCGGAAAACAACCCCTGCTCGACA
AACTGCTTGTTGTTGGCCTGCCACACGTTGAACGGCGCCTCGGAAAACCACTCCTTGAGCACCGC
CTCGTCGTTCTTGAGGTACGCCTCCACGAGCTCGGGCACAATGTA
Found at i:36502 original size:12 final size:12
Alignment explanation
Indices: 36485--36510 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
36475 GCGACATCGG
36485 CGGTGGTGCGCA
1 CGGTGGTGCGCA
36497 CGGTGGTGCGCA
1 CGGTGGTGCGCA
36509 CG
1 CG
36511 CCACGGCCCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.08, C:0.27, G:0.50, T:0.15
Consensus pattern (12 bp):
CGGTGGTGCGCA
Left flanking sequence: Indices 35985 -- 36484
CTCCACGAGCTCGGGCACAATGTAGTTGACAAGCGTCTTCTGGAAGTCGGTCAACCGGAACAGCG
GGTCCATCAACTTGAACTGCTTCACCACCTTGGCCTGCTCGGTCTCGGAAAAGAACCCCGTGACC
TTCTCGATGATGGTCCGCACCAACGAGATGAGCCCGTTCTCCAGCTCCTCCCACCGCTCCTGCAA
GTAGGTGATGCCCTTGCCTGCAGGCGAGGTGCGCTTGAACTTGTCCCACTTCTCGCCCACCAGGG
GACCGGTGGGCTTGTGGTCAGTGGCCACAAGCGCCCCGCCGGCCTCCTCGTTCTCCCGCACGGGC
CCCTTCCACCCGGCGGCAATCTTCTTCTTGAGCTCGCGGTTGCGCAACTCGCGACGCTGCTCCTT
GGTCAAGTAACCCCCGTACAGCGTCAGCAGCCCGTCGTCAATCACCTCGGACACGTCCTTGTACA
CCTGGGTCTGGCGCACGGGCTCAAACGCCTTGTCGGCGACATCGG
Right flanking sequence: Indices 36511 -- 37010
CCACGGCCCACGGGCGAGTCCCACGCCTTGACGGCCGCGCCACCCACCGTCTCCGCGGTCTTTTT
CGCCACCTTGCCCACCGCCAGCGCTCCCTTTTGCGAGCGGTCGTAGGCCTCCTTGGCCCGTTTGA
ACGACTCCAGCTCGGCCATGCGGCCCGTCTCGTCCTGGAGCGCCTTGATGTTGTCCTTCAACTCC
GCTGACAGCTTCACTTCCTTCTTGAAGGTGTCCAAAAACACTTTGAGCGGCAGCTGCTGGCCCTG
CCACACAGCAGGGGCCGGGTGGAACGCGCGCACCATGGGCGCGATCGAACGCGCACTGCGGGTGC
TTCTGGAGATCATTGTCCGACTATGTACAGAGGCCAGGGATGGACAGTGGTTGGGGTCAGCCCGG
CTGAAAAATTTTGGAAGAGGTTCGCGGCCGTGTGCAGGAGCAACGGAGATCGAGCTGGGTTAAAC
GCCGAGATGGTGGCGACGGGGGCGGGTGGCGCGGGGCCAGGGAGC
Found at i:37614 original size:16 final size:16
Alignment explanation
Indices: 37593--37652 Score: 84
Period size: 16 Copynumber: 3.8 Consensus size: 16
37583 GAATCAACAT
*
37593 ACCTGTAGCTTTTCAA
1 ACCTGTAGCCTTTCAA
*
37609 ACCTGTAGCCTTTCAC
1 ACCTGTAGCCTTTCAA
* *
37625 ACTTGTAGCCTTTCAT
1 ACCTGTAGCCTTTCAA
37641 ACCTGTAGCCTT
1 ACCTGTAGCCTT
37653 CGATCGTCGT
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 39 1.00
ACGTcount: A:0.20, C:0.30, G:0.13, T:0.37
Consensus pattern (16 bp):
ACCTGTAGCCTTTCAA
Left flanking sequence: Indices 37093 -- 37592
GGGTTCGGAAATTGCCGTGACCACCGGGACGGGGGCCACAAAAGGGCCAGCGGAGCGGGGCAGCG
GAAGAGGGGCGTGTGGCGGGCAAAGCTTGTGGGTGTGTAGGGGCTGTGGTCGTAGATTAGGGGGA
TGGATGGTGGAATTGGGCGGTGGGAGAGGCGTGTGGGTGGTGGTTTAGGGGGATTTAGAGGCTGG
GGCGCCCGGAAGCGCTCCGGATTTGTGTAGGGTACTTCTAAAGGGGCCAGGGCGGTGGATTGAAG
GCTAGTTTTGACTCTCTGTCAGTGCTAGCGTGTGTAGGCACGTAATAGCATACAGATCTAGCAAG
CGACATACGAGGGCACTATGCAGGTCGTGATGGTGGGTAGCAGTGGAACCCAAGGCCGAAACGGG
CAATGGCACAGGGCCAGGACACATCTATGCGAAATCATCAAAGAGAGCCCGTTAAGCGCCAATAT
GCAATGTCCGGGTTAGATGCTTACACCGTGGACTCGAATCAACAT
Right flanking sequence: Indices 37653 -- 38152
CGATCGTCGTCACTAGTTTCGACATTCGTATTGGCCACCCGCCCAGCCTTCGATTCCCTAAGCAA
CAGACGGCACCTCTCCTCGCCAAGCTCATCTTCCATTGCCTGATGAATGACCTGTATGTCCCACC
ATGCCCAATCCCATTGTACCGCCCACCAGTCAACTTTAACCGTGTGTCTCGGATCACTTCAGCAC
ACCGACTCGCTAGGGATATCGCATCATCGGCTATCGCAAGGAGCCAGGTCACCGGAACAGACTGA
TCACCGTGATCACCACCTCCTACGCCCAGATGGGCCCACTGCTTTAATGTCGCCGCTAGCAACCA
CCACCCGAATGTCGCCTCTCACATCCACCACCCGATTCGACATCATCCCTAATCCAGCAATCCAC
CACCCTCCTACCGCTCACACCATAGCACGATTACCCCACATTTCCCCCGTTCTGGCGTGATGGCT
CTGATGAGCACTAGTTTGTTCGCCTACATCAGCCCACATGAACAC
Found at i:37988 original size:27 final size:27
Alignment explanation
Indices: 37958--38012 Score: 76
Period size: 27 Copynumber: 2.0 Consensus size: 27
37948 CCACTGCTTT
37958 AATGTCGCCGCT-AGCAACCACCACCCG
1 AATGTCGCCGCTCA-CAACCACCACCCG
* *
37985 AATGTCGCCTCTCACATCCACCACCCG
1 AATGTCGCCGCTCACAACCACCACCCG
38012 A
1 A
38013 TTCGACATCA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
27 24 0.96
28 1 0.04
ACGTcount: A:0.25, C:0.45, G:0.15, T:0.15
Consensus pattern (27 bp):
AATGTCGCCGCTCACAACCACCACCCG
Left flanking sequence: Indices 37458 -- 37957
CAGTGGAACCCAAGGCCGAAACGGGCAATGGCACAGGGCCAGGACACATCTATGCGAAATCATCA
AAGAGAGCCCGTTAAGCGCCAATATGCAATGTCCGGGTTAGATGCTTACACCGTGGACTCGAATC
AACATACCTGTAGCTTTTCAAACCTGTAGCCTTTCACACTTGTAGCCTTTCATACCTGTAGCCTT
CGATCGTCGTCACTAGTTTCGACATTCGTATTGGCCACCCGCCCAGCCTTCGATTCCCTAAGCAA
CAGACGGCACCTCTCCTCGCCAAGCTCATCTTCCATTGCCTGATGAATGACCTGTATGTCCCACC
ATGCCCAATCCCATTGTACCGCCCACCAGTCAACTTTAACCGTGTGTCTCGGATCACTTCAGCAC
ACCGACTCGCTAGGGATATCGCATCATCGGCTATCGCAAGGAGCCAGGTCACCGGAACAGACTGA
TCACCGTGATCACCACCTCCTACGCCCAGATGGGCCCACTGCTTT
Right flanking sequence: Indices 38013 -- 38512
TTCGACATCATCCCTAATCCAGCAATCCACCACCCTCCTACCGCTCACACCATAGCACGATTACC
CCACATTTCCCCCGTTCTGGCGTGATGGCTCTGATGAGCACTAGTTTGTTCGCCTACATCAGCCC
ACATGAACACCGCGTCACATTACGCTTTAGGAAGCTGGCAAACCCCTGAACTGGCACAGAGGTTC
CATAATAGCTTCCCCCCATTCCCGATTAGTACTCCCCTCTCGCACCCCCTCTCTTTAACCCCTCA
CAGAGAGGGGAAGAACTTAAAACTCTTGCTTGTCTCAGACCCAAGCCAGGCGTTGCTATTTCACC
AGCGCCACAGTCACAAAAACGCTCGCTTATTTTGCTTCCCGTAAGTCGTGCCACAATGCGAACCC
CTTGATGCTTTTCTACCCAGACTCCTCTAACACTCCCAGGCCCGTAAATCGCCAAACAAACACCA
GACAAACACTACACAACCCCCCTTGACTCCACATTCCGCTCTCCC
Found at i:45093 original size:12 final size:12
Alignment explanation
Indices: 45078--45106 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
45068 CTCACCTGAT
45078 GACGACTCCGAC
1 GACGACTCCGAC
45090 GACGACTCCGAC
1 GACGACTCCGAC
45102 GACGA
1 GACGA
45107 GGGTGTCTCG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.28, C:0.38, G:0.28, T:0.07
Consensus pattern (12 bp):
GACGACTCCGAC
Left flanking sequence: Indices 44578 -- 45077
CTCTTCTACTTTCGTGTCTCCATTGTCTTCTTTGTTTCGATTCCCTAGAGTTTTTCAGATCTCGA
TTGTAATTTCTTGGTTGCCATGCATACCCACCTTAACGTCCACTCGAGTAGCGAAAAGGTATATA
AAGAGGACCATTTCAGCCCTTATTTCATCACAACATGTTCTACCAATTACTCATTCTCGCTTCTT
CTGTCTTCGCTGACGACATTGTCCAGTGGATCGACGGCCACAAATACTACACGGGCTCGCCCGCG
GTAGTGGGCAAGATCCTCCACCACAAGTACGACGACGACTACGCCAACTCGGTGGTTTCTGCCTA
TACTTCTTTGTACGACGAAACCAACGGCAAGGTGCCGCTGACCCGGATTTCTTTGTGGAAGAAGG
GCGACGACTTTGACAGCGACTATGACAGCCCCGATGACAGAAACTCCGCTGACGAAAAGGATGAT
TCAGGTGACGAGTCTGCTGATGACTCGGCCGATGACTCACCTGAT
Right flanking sequence: Indices 45107 -- 45606
GGGTGTCTCGCGTCGCTCGAAGCGTTCTACGAGACGCATGAAGATCATCAAGCGGGACGACGACT
CCGACGATTCTGGTGATGATGACTCTGGTAATGACCAGTCTGACGATGAGTCTGACGACGATCTT
GACACTCGCAAGATTGCCAGAAGAGTCGCCCGTCGTTCCAGAAAGATCAAGCGCGTCGATGATTC
TGACGACTCTGGTGACGACCACGACTCTGCCGACTCTGGCGACGACGACAACTCAGATGATGACT
CCGACGACGACCTCAAGAGAGTGAAGGTCCGGAAGGTGACCCGTCGTTCCAAACACATCAAGCGT
GACGAATCGGACGACGAGTCTGCGGACGACAACAGCGTTGACGAGAACTCCGCTGACGACAACTC
GGACGACTCTGGCGACGACTCTGATGATGGTCTCGCTCGTAGAGTGACCAAAAAGGCTCGCCGGA
AGGTTGCTAAGCGTGGAGACGACTCCGACGACGACTCCGCTGACG
Found at i:45355 original size:27 final size:27
Alignment explanation
Indices: 45300--45355 Score: 76
Period size: 27 Copynumber: 2.1 Consensus size: 27
45290 CGTCGATGAT
* *
45300 TCTGACGACTCTGGTGACGACCACGAC
1 TCTGACGACTCTGGCGACGACCACAAC
* *
45327 TCTGCCGACTCTGGCGACGACGACAAC
1 TCTGACGACTCTGGCGACGACCACAAC
45354 TC
1 TC
45356 AGATGATGAC
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.21, C:0.36, G:0.25, T:0.18
Consensus pattern (27 bp):
TCTGACGACTCTGGCGACGACCACAAC
Left flanking sequence: Indices 44800 -- 45299
GGATCGACGGCCACAAATACTACACGGGCTCGCCCGCGGTAGTGGGCAAGATCCTCCACCACAAG
TACGACGACGACTACGCCAACTCGGTGGTTTCTGCCTATACTTCTTTGTACGACGAAACCAACGG
CAAGGTGCCGCTGACCCGGATTTCTTTGTGGAAGAAGGGCGACGACTTTGACAGCGACTATGACA
GCCCCGATGACAGAAACTCCGCTGACGAAAAGGATGATTCAGGTGACGAGTCTGCTGATGACTCG
GCCGATGACTCACCTGATGACGACTCCGACGACGACTCCGACGACGAGGGTGTCTCGCGTCGCTC
GAAGCGTTCTACGAGACGCATGAAGATCATCAAGCGGGACGACGACTCCGACGATTCTGGTGATG
ATGACTCTGGTAATGACCAGTCTGACGATGAGTCTGACGACGATCTTGACACTCGCAAGATTGCC
AGAAGAGTCGCCCGTCGTTCCAGAAAGATCAAGCGCGTCGATGAT
Right flanking sequence: Indices 45356 -- 45855
AGATGATGACTCCGACGACGACCTCAAGAGAGTGAAGGTCCGGAAGGTGACCCGTCGTTCCAAAC
ACATCAAGCGTGACGAATCGGACGACGAGTCTGCGGACGACAACAGCGTTGACGAGAACTCCGCT
GACGACAACTCGGACGACTCTGGCGACGACTCTGATGATGGTCTCGCTCGTAGAGTGACCAAAAA
GGCTCGCCGGAAGGTTGCTAAGCGTGGAGACGACTCCGACGACGACTCCGCTGACGACTCTGTTG
ATGACAACTCCGACGACGACCACTCTGACGACAACTCTGATGACGAAGATGACCTCCGCAAGAGA
GCCATGAATATCGGCCGCCGTGGACGTTTTGCCAAGCGGAGCAAGATGGTTATTCGTGATGACCA
CCAGTCCGACACCGATAACGACGGCGTTGACACCGACAATGATGGAGACTCTGACAACGACTCCA
ACAACAACAACAACAACAACTCTGGTGGCAGCGGTAACTCTGGAA
Found at i:45657 original size:39 final size:39
Alignment explanation
Indices: 45583--45659 Score: 95
Period size: 39 Copynumber: 2.0 Consensus size: 39
45573 CGTGGAGACG
* *
45583 ACTCCGACGACGACTCCGCTGACGACTCTGTTGATGACA
1 ACTCCGACGACGACTCCGCTGACGACACTGCTGATGACA
*
45622 ACTCCGACGACGAC-CACTCTGACGACAACT-CTGATGAC
1 ACTCCGACGACGACTC-CGCTGACGAC-ACTGCTGATGAC
45660 GAAGATGACC
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
38 1 0.03
39 30 0.91
40 2 0.06
ACGTcount: A:0.26, C:0.35, G:0.21, T:0.18
Consensus pattern (39 bp):
ACTCCGACGACGACTCCGCTGACGACACTGCTGATGACA
Left flanking sequence: Indices 45083 -- 45582
CTCCGACGACGACTCCGACGACGAGGGTGTCTCGCGTCGCTCGAAGCGTTCTACGAGACGCATGA
AGATCATCAAGCGGGACGACGACTCCGACGATTCTGGTGATGATGACTCTGGTAATGACCAGTCT
GACGATGAGTCTGACGACGATCTTGACACTCGCAAGATTGCCAGAAGAGTCGCCCGTCGTTCCAG
AAAGATCAAGCGCGTCGATGATTCTGACGACTCTGGTGACGACCACGACTCTGCCGACTCTGGCG
ACGACGACAACTCAGATGATGACTCCGACGACGACCTCAAGAGAGTGAAGGTCCGGAAGGTGACC
CGTCGTTCCAAACACATCAAGCGTGACGAATCGGACGACGAGTCTGCGGACGACAACAGCGTTGA
CGAGAACTCCGCTGACGACAACTCGGACGACTCTGGCGACGACTCTGATGATGGTCTCGCTCGTA
GAGTGACCAAAAAGGCTCGCCGGAAGGTTGCTAAGCGTGGAGACG
Right flanking sequence: Indices 45660 -- 46159
GAAGATGACCTCCGCAAGAGAGCCATGAATATCGGCCGCCGTGGACGTTTTGCCAAGCGGAGCAA
GATGGTTATTCGTGATGACCACCAGTCCGACACCGATAACGACGGCGTTGACACCGACAATGATG
GAGACTCTGACAACGACTCCAACAACAACAACAACAACAACTCTGGTGGCAGCGGTAACTCTGGA
AGTAGCAACAACCAACTGAACGGTGCTGGCACCCTCAAGGTTAAGGGCCTTGTGGCTGGCGTCGC
CATCGGGGCTGGTCTCCTTCTTTTGTAGTGGAACTACGACTGTTTGATTTTTAGTTTAGCACATG
TGTCTCTTGTTTATTGAATGAGAAAAGATAAAATCCAAAAATCGTAGGCTTAGTAGTTAACTAGC
GTCAATTATTTACTCTCTTTGTTCTACCTTGTTTCTCATTTGCAACCATTTTGCAGCCATTGGGC
GATCTTATCTGAGCCGCACAGATGCGAGATGGCCAAATTACAACC
Found at i:71214 original size:13 final size:13
Alignment explanation
Indices: 71198--71251 Score: 65
Period size: 13 Copynumber: 4.2 Consensus size: 13
71188 ATGTTCTCCG
71198 CTCTGGCTGCAAA
1 CTCTGGCTGCAAA
*
71211 CTCTGGTTGCAAA
1 CTCTGGCTGCAAA
* *
71224 CTCTGGTTGCAGA
1 CTCTGGCTGCAAA
*
71237 -TCTCGCTGCAAA
1 CTCTGGCTGCAAA
71249 CTC
1 CTC
71252 ACTCTTTACA
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
12 9 0.26
13 26 0.74
ACGTcount: A:0.20, C:0.30, G:0.22, T:0.28
Consensus pattern (13 bp):
CTCTGGCTGCAAA
Left flanking sequence: Indices 70698 -- 71197
TGAAGTACTACGGGGATGTGGTGGACGAGGTGGAGATTGGCATGGGCTTGGGCAGAATCTGCTGC
TAGCCTGGTGCAGCGGTAGATTACCTCACTAGAATACACATATGGTTTCATGTTTCATGTATCAT
TCATTCATTATATAGTTAGCAGCAGCTCTTCTTCGATTTGCAGCCACATTCGCACGAGGTGGAGC
CTGCACCGGCACACGAAGCACACTTGCACGCACAGGCGTCGGAGCCACCGCAAGAGGCGCCGCAG
TAGTTGATCATCTCAGTTCTCATAGTGATTTGTGTTTGTTGAATTGATTGATTTCTCGAAACATT
GGCCCTGGCTTTATACTGTTGCGTTCTTTTCGCCTCGTGCAGGTGCGGGCGTTGTGCCTGGCTTG
GCACATATGAGAGATTTGTGCGAGCGTGGTTTATGCCGTGCGGGCATTATGCGGGTGGCAGGGTT
ATTCTTTGGTGTTCTATGCGGGGTAGCTTCCGTCTATGTTCTCCG
Right flanking sequence: Indices 71252 -- 71751
ACTCTTTACACTCGCTTTCTCGTTGTGTCAAAGTGGGTATACACCCTACCACCTGATAATCGAGC
CTAATAACTCAAACAATACAAACTAACCAAACCTCACTCAGCCTTAGCGTTACTTCTATTCATTA
TCATTACCTAGTTACCAGAACTTCAGCGCCAACACCAAGAAGATCAAGATGATCAACACCGCGAT
AATCGCGTACGAAATAAACTTATTCGCCACTAGCCGACGGCCCATGGTTTTCAACGTGTTGACCG
AACGGTCCACATACAGCTCTGCCTGGGCCAACGTGTTGCGCGACCCCTGGATCTGGTCCCGCTGG
TATGTCAAGTCGTTGAGGATCCCCAGCCCAATCTGCTCGGTCTCAAGCGCCACGCGCTGCGAGTC
CTGCAATCGCTGCAGCAGCCGTTCCAACAGCAGGTTGTTCTGCAACAATTGGCGGCGCTGGTCAG
CGCTGGCATCCCCATCATCGTCCCGGTAGCGCCCCCCGAACAACT
Found at i:77283 original size:17 final size:17
Alignment explanation
Indices: 77258--77291 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
77248 CCCCTTCCCC
* *
77258 CGCCCCCTATCCCTCTT
1 CGCCACCTATACCTCTT
77275 CGCCACCTATACCTCTT
1 CGCCACCTATACCTCTT
77292 TTCCAGCTCT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.12, C:0.53, G:0.06, T:0.29
Consensus pattern (17 bp):
CGCCACCTATACCTCTT
Left flanking sequence: Indices 76758 -- 77257
CATTCCGGGGTATCACATGACACTGTCACTGGTGCCCGACACTTTTGCGTGGTGACCCCTCTCCT
ATCGCCACCGGTGGTGCGAGTTTGACGCCATTCCGCATACCCCGTAAAGCTGGCACTATACTACA
CAGGAGATTTGGGGCAAGTAGTGTCGTAGATTGAGGGGAATGGGTTGGGGCTGGTGGTGACGACC
TGTTGGGAATGTGGAACATGGCGGGGGTGACACCACATAGAGGGAGAATTTCATGGATAGGTACT
ACTTCTGACAATTCTGAGGGACTTCTTATCTGAATCTCGAAGGGTCAAGTGGGGACAAATGATGT
TCAAATTATGAGGGAACTACAAGCTAGCCATTAGAGCCATGGCTAATTGAGAGTCTACGTCACTT
GGGAGAAGCCGACTTGCAAAATACTATCAATAGGCAGACCCTCCATTTTTCTGGCCCATTAGTTC
ACAACTAGCTATCTTCGCTCCCACCGTCCCATCGCCCCCTTCCCC
Right flanking sequence: Indices 77292 -- 77791
TTCCAGCTCTCTCCACAATACTCAGTTAAATCAAAAGACCTCATTACCTTACCCTACATTCAGAC
GATTCTCTTTCCTTTCCACTCCCCACTCCAAACCCACCCTACACCCTTGCTGCACGATGGTTGTG
CGCACCTAAAAATTTTTCAGACGACACCCTCCCCAGCCATGGTGAACAAGCGCACTATCAAGTAC
GGTGGCCGCTCGGGTATTCTCCCGAAGCCCCGGCCTATGTTCAAGCGGTTCCCGATCCGGCCCAA
GACCGAGGCCGAGCTCGCAGAAGAGAGCAAGCACGAGCAGGGGTTCAAGGGAGTGCCTCTTCCCA
AACGCAAGGGCTTCACCTTCCACGCGGAGCCCCAGCAAAAGCCCGTGTTCACGGTGGAAGAGAGA
ATCAAGAAATTCATTGATGCGCGGGCGCCCCAAAACATCGACGAGCTGAAACTCTCCGACGACGA
GCTCTGGCAGGTGAAGCGCGACGAGATCCGTCGGGCCCACTTGCG
Found at i:82607 original size:13 final size:13
Alignment explanation
Indices: 82584--82722 Score: 115
Period size: 13 Copynumber: 10.7 Consensus size: 13
82574 TACTTGGTTA
*
82584 ACTATTAGTTGAG
1 ACTAGTAGTTGAG
*
82597 ACTAGTGGTTGAG
1 ACTAGTAGTTGAG
**
82610 ACTAGCGGTTGAG
1 ACTAGTAGTTGAG
* *
82623 ACT-GATAGTAGAT
1 ACTAG-TAGTTGAG
82636 ACTAGTAGTTGAG
1 ACTAGTAGTTGAG
*
82649 ACT-GATCGTTGAG
1 ACTAG-TAGTTGAG
*
82662 A-TTGATAGTTGAG
1 ACTAG-TAGTTGAG
82675 ACATA-TAGTTGAG
1 AC-TAGTAGTTGAG
*
82688 ACTGGTAGTTGAG
1 ACTAGTAGTTGAG
* *
82701 ACTAGTAGTCGAC
1 ACTAGTAGTTGAG
82714 ACTAGTAGT
1 ACTAGTAGT
82723 CACTTCCATC
Statistics
Matches: 103, Mismatches: 16, Indels: 14
0.77 0.12 0.11
Matches are distributed among these distances:
12 4 0.04
13 97 0.94
14 1 0.01
15 1 0.01
ACGTcount: A:0.29, C:0.10, G:0.29, T:0.31
Consensus pattern (13 bp):
ACTAGTAGTTGAG
Left flanking sequence: Indices 82084 -- 82583
TCAAGGAGCACCCAGACCAGCAGCTCTTGTACTTTTTGGACCAGAAGTTCAGTGATCCGCAATTG
CAAACCCCCGCGGAGGTGCTTGAGCTTGCCCGGTTGATGTACGCCTACGAGCTTGTGCTAAACCT
GTACTGTGTGGCCGAGTTTAAAAAGGAGATGACTTACGACTTTCTGCCGGTGTTGAACCACCTCG
AGAAGGTGGCGGAGACCCAGCGGGGCCGCGAGATTGCCGAGAAGAACATCGCCTCCATCGCAGAG
AGTAACGCCAACGCCAAGACGAACGGGAAGCGGAAAGCGCCCGTGAAGAAGGCCCCGGTGAAGAA
GGTGGCCAAGGGGCGGGGTGCTCTCGACAGTTTCTTCAAAGCAGCGTAGGATGAGTCTGACTAGA
CGAACGGTCTGGTGTAGCGAATACCGTGGCTGGCGAGGTTAAAACTGACTGTGTTTGACTCGACC
AGCGAAGTGGCTCAATTACTAACACTATTGCTTGATACTTGGTTA
Right flanking sequence: Indices 82723 -- 83222
CACTTCCATCAACTGGGCCTTGTGGCTTCAAATGACTTAGTGGCCTACCAATTAGCTAGGAATTA
TAGCCCCTACTTACCCAGAATAGACACAGCCTACCCACACCATTCATGAGTGCATTACTATTTAC
ATTCGGTTTATTTTTTGTCGTTGGCCTTGACCCCCTTGTAGAGAGACATCCCCAGCGCCATCAAC
CCGCCAAGATCGCCCAAGTTCAGGGGAATCACCACGGTGTTGGTCTCCTTGGCCAACTTGCCGAA
CTCCTTGATGTAGTCCTGGGCCACCAGCAACTGCACGGCGTTGTCGCCACCAGGCGAGTTCTCAA
TGGCGTCGGCCACCTTGCGAATACCCTCAGCGGTAGCCTTCAGCTTCAAGAGAATCTGCTCCGCA
TTACCCTTCGCCTCGTTGATCTGCTCTTGCATCTTGGCCTCGGACGCCAAAATCACCGCCTGCTT
CTCACCCTCGGAGATGTTGATCTTGGCCTGGCGCTGACCCTCGGA
Found at i:85713 original size:13 final size:13
Alignment explanation
Indices: 85695--85720 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
85685 GATACGACAT
85695 TTTGCAGCCACCG
1 TTTGCAGCCACCG
85708 TTTGCAGCCACCG
1 TTTGCAGCCACCG
85721 AAATCTAGCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.38, G:0.23, T:0.23
Consensus pattern (13 bp):
TTTGCAGCCACCG
Left flanking sequence: Indices 85195 -- 85694
TTGAACAAGAACCGCGAGCTTATCCAGCTCCTGAAGAACGGAGGGTTGCCCATTGACGCGGCCCA
GTTGGTGGAGTTGTGCTTGGCGTCCAACAAGTACGTGGACGCACTCACCGACTTGATGAACGGAG
AGCTCGAGAAGTGGGAGGCGGCTCACTACAACCCGCTTTTGGAGGGGATGGCCCTGCGCGAGGAG
CACGCGGTGCGGGTGGAAGAAGAGCAAACCGAGCCTACGGTGGGCTCGAAGACGTTGCCTATGGA
GTAATGGAGTGTTTTACAGTGGCGCTGGCCACACCACCACTTTAGCGATTGGCCTCGAATTGAGT
TTGCAGGCCAGATCGTGATTGAATCCAATTAGGTTAATTTTTATCTATTTGATTCTATACCTTGC
ATTTACGGGGCCGTTTGTTGACAGGACGACTGACAGTTGGCCCACCCCTGCTTCGTGACAGATTG
CCTGATCGGTTTCGCATTTCCGCTGCCAAGCCTCGGATACGACAT
Right flanking sequence: Indices 85721 -- 86220
AAATCTAGCAAACCTCGTTTTCTATAACCTTGCAAATTCTAATACAATTAAAAGATTAATTAGTC
TAAAGTTTGGCGTCGCCCAACAGGCGCTCCTTGTTTTTGTTGATGATGTCCACCAAGTAGGCAAA
CCGCACCGAGTCCACCGATAACTGCGCCTGGACCACCGACTCCAAAAAGTCGGCCACCACCCGCA
AGTCCTTGGGCTGCATCATCTGAACGAACGCCTTGGTCTTGGCCTTGTTCTTGAAGATCTTGACC
AAGTTCAAGTGGTTCAAGTAGTACAAGTCCAGCAACAAGTATTGTTTGTTGATCAGCTCCACCGG
CTGCTGGTCGCGCAGAGTCTTGATCACGTACTTGAGCAAGTTCTTGGTGGTGGGGTACCGGATGT
CGTTCTCGTCGATGGGCACGTTGGGCTTTTTGGGGTCGTTCTCCTGGATCACCGCGGTGTCGTCG
CGCGGGTTGTACGTCATCAACGACCGGATCAAGTTGACGTACAGC
Found at i:90182 original size:12 final size:12
Alignment explanation
Indices: 90167--90221 Score: 94
Period size: 12 Copynumber: 4.6 Consensus size: 12
90157 CACCCAAACA
90167 CACCACC-AACCT
1 CACCACCGAA-CT
90179 CACCACCGAACT
1 CACCACCGAACT
90191 CACCACCGAACT
1 CACCACCGAACT
90203 CACCACCGAACT
1 CACCACCGAACT
90215 CACCACC
1 CACCACC
90222 TAATTAACAG
Statistics
Matches: 42, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
12 40 0.95
13 2 0.05
ACGTcount: A:0.33, C:0.55, G:0.05, T:0.07
Consensus pattern (12 bp):
CACCACCGAACT
Left flanking sequence: Indices 89667 -- 90166
TCGCACGCGGGTTTCACAAGTGGTTCCCCGCCATCGTAGGCGTCTACTGTGTCTAGTTTCACTGG
CTACGTCATTGGGTTTGGATGTTTGCTTACCGTACAAACCCCGTTGCAGGAAAAGGAACGCGCCA
ATTGCGGTGGTGTCATACGATGAGGCGCGATCCGTAGTGGAATGTCGTGTAGAGGAGTGGAAGGT
GCAATTGGTGGTTGGCGGGCGCTTGGTTCTACAGGGGCACTACCGTATCTGGAAAGAAGCCACAG
TGTTGCAGGGGTGACATGTGTTATCAGGATTTGCGCGTGTGACAAGCGCTAGCGTAATCGGGCGT
AGGAGTCTGAATGGTGGACTCGGAGATGTGGAGGCTAAGGGCCGACACGATCTGGGCAGCACCGT
GCGGGAGCCAATGAGGGCTGAGGAATTGAGTAGAAGCAGCCTACCTGAGTCAACGTAACCGAGTC
ATTCTAGATAGCCCAGCTTCACCGCCCAAACTTACCACCCAAACA
Right flanking sequence: Indices 90222 -- 90721
TAATTAACAGTCTGAACTCACCGTTCGTGCTCGCCACTCTGTACTCACCCCGTAACCTACCTGAC
TCCCCCTTACCCTACCTGACTCCCCCATAACCTACACACATCACCTGATCAGCTCACTCGTTTCT
CGTTTATAAATAACTGTCTAGAACTTGGCCTTGTCCGGGTTCTCAAACAAGTTGCCGTCGCCGTA
CAACACGTCAAAGGTGTCGCGGAAGTGCTTCAACGCCATGGGACGCTTCAACTTGATGGTGGGAG
TCAAAATGTCCCCACCAGGCATCCCCAACGGGTTGATGCCCGCCACCACGTTCTTGATCTTCTCG
TACAGCTGCAATTTGTCGCCGACAGCCGCGTTGAGCACGGAAATGATCTTCTTCTTCGCGTCGTT
GTTGCCGTTGATGTACTCGCACGCCTCCTGGTGCGAGCCAAACTGCTGCCCAAGCACCTTGCCGT
AGTACTGGAGCGCCACCGTGTCCTCGATGCCAATGATCCCCACAA
Found at i:90320 original size:20 final size:20
Alignment explanation
Indices: 90264--90321 Score: 80
Period size: 20 Copynumber: 2.9 Consensus size: 20
90254 GCCACTCTGT
*
90264 ACTCACCCCGTAACCTACCTG
1 ACTC-CCCCATAACCTACCTG
* *
90285 ACTCCCCCTTACCCTACCTG
1 ACTCCCCCATAACCTACCTG
90305 ACTCCCCCATAACCTAC
1 ACTCCCCCATAACCTAC
90322 ACACATCACC
Statistics
Matches: 33, Mismatches: 4, Indels: 1
0.87 0.11 0.03
Matches are distributed among these distances:
20 29 0.88
21 4 0.12
ACGTcount: A:0.22, C:0.52, G:0.05, T:0.21
Consensus pattern (20 bp):
ACTCCCCCATAACCTACCTG
Left flanking sequence: Indices 89764 -- 90263
TACAAACCCCGTTGCAGGAAAAGGAACGCGCCAATTGCGGTGGTGTCATACGATGAGGCGCGATC
CGTAGTGGAATGTCGTGTAGAGGAGTGGAAGGTGCAATTGGTGGTTGGCGGGCGCTTGGTTCTAC
AGGGGCACTACCGTATCTGGAAAGAAGCCACAGTGTTGCAGGGGTGACATGTGTTATCAGGATTT
GCGCGTGTGACAAGCGCTAGCGTAATCGGGCGTAGGAGTCTGAATGGTGGACTCGGAGATGTGGA
GGCTAAGGGCCGACACGATCTGGGCAGCACCGTGCGGGAGCCAATGAGGGCTGAGGAATTGAGTA
GAAGCAGCCTACCTGAGTCAACGTAACCGAGTCATTCTAGATAGCCCAGCTTCACCGCCCAAACT
TACCACCCAAACACACCACCAACCTCACCACCGAACTCACCACCGAACTCACCACCGAACTCACC
ACCTAATTAACAGTCTGAACTCACCGTTCGTGCTCGCCACTCTGT
Right flanking sequence: Indices 90322 -- 90821
ACACATCACCTGATCAGCTCACTCGTTTCTCGTTTATAAATAACTGTCTAGAACTTGGCCTTGTC
CGGGTTCTCAAACAAGTTGCCGTCGCCGTACAACACGTCAAAGGTGTCGCGGAAGTGCTTCAACG
CCATGGGACGCTTCAACTTGATGGTGGGAGTCAAAATGTCCCCACCAGGCATCCCCAACGGGTTG
ATGCCCGCCACCACGTTCTTGATCTTCTCGTACAGCTGCAATTTGTCGCCGACAGCCGCGTTGAG
CACGGAAATGATCTTCTTCTTCGCGTCGTTGTTGCCGTTGATGTACTCGCACGCCTCCTGGTGCG
AGCCAAACTGCTGCCCAAGCACCTTGCCGTAGTACTGGAGCGCCACCGTGTCCTCGATGCCAATG
ATCCCCACAAGGTAGTTCTGCAACGAGTCGCCGTGCACGTAGATCTGCGCCAACGCGGGGTTGGT
GGCCATGTACAAGTTCTCGCACCGCTCGGGCGTCACGTACTCGCC
Found at i:95106 original size:9 final size:9
Alignment explanation
Indices: 95092--95171 Score: 126
Period size: 9 Copynumber: 8.8 Consensus size: 9
95082 GGAGGCCTAA
95092 AGTGCTACC
1 AGTGCTACC
95101 AGTGCTACC
1 AGTGCTACC
95110 AGTGCTACC
1 AGTGCTACC
95119 AGTGCTACC
1 AGTGCTACC
95128 AGTGCTACC
1 AGTGCTACC
95137 AGTGCTACC
1 AGTGCTACC
95146 AGTGCTACTGC
1 AGTGCTAC--C
*
95157 AGTGTTA-C
1 AGTGCTACC
95165 AGTGCTA
1 AGTGCTA
95172 TCGCAGTGCC
Statistics
Matches: 67, Mismatches: 2, Indels: 5
0.91 0.03 0.07
Matches are distributed among these distances:
8 7 0.10
9 53 0.79
11 7 0.10
ACGTcount: A:0.23, C:0.29, G:0.24, T:0.25
Consensus pattern (9 bp):
AGTGCTACC
Left flanking sequence: Indices 94592 -- 95091
GTCCTACACCCCCGCCTCTACGTACCCTGCCTGCACCACGCCCGCCTGAGTCCGCCTTCCGTTCT
CAGCCTGGGACGGCTGCAAAGTAACACGTCCGCATCAAACGCGCATACCGTAGAATTTCAACTCA
AATCGACACGTCAATAGATCACCATGGTAAGTCGTTTGCGCCACACCACCGTCCTTTGAGCAAAT
ACTAACGCCCCAGGCCCTTCAGACTCCCAAGCAAAGAGCTGCCAACGCCCGCTTCGAAAAGAAAA
ACGTCAACCAGTGGGGTAAGAAGAAGGTTGTCAAGCAGAAGACCGAGTTCCCGATCTCGAGAGGA
TGGATCGCCGCGTTGGTGTTCTTGGTGTGCGGTGGTGCCGTGTTGGAGATCATCCGCTTGCTCTT
CTAAGACGCCGACCCGGTATCACGCGTGTAGCGTGCCATGTGTTGTACGGGTCATGTGCATGAGT
CCGAGTGCTATCATGAGCTACCAGCTCCTATTACAGGAGGCCTAA
Right flanking sequence: Indices 95172 -- 95671
TCGCAGTGCCACTTGGGTGACAAAGTGTACTACCCAGCACCACTTGGGTGACAGGTGTACTACGC
CAGTCCCCAGTAGTGCTGTGGTGGTGCTCCAGTACCAGTAGTGCTCTAGTAGTGCCCCAGTACCA
GTGGCTTTGCCGCATTCCGTCCCGTGCCCATGACGCTGTACCACACATGTCTCACTATACCGTGA
TCCCACCGATCCACCCTTCACCCATTGTATTATAGTGCTGTTTATTTTAGTTTAATAAAAACAAG
CTTATGAAAGCTCAAAACAAGCTTATGAAGCCTTAAACAAGCCTACGAAAAGCTTTAACCAAGAA
TATGAAAAGCTTAACAAGCTCATGAAGGTGCCTGCACCCGTTCCTCCAAACACTCCACCAGGTCT
GGCTCGATCACCACCCCGTCGAGCAAGTCGATCTCCGCCACCGACCCCACCCGCGGCGGCACCGG
CTCCGCAAACGGCTTGACCACCGTCACGTCGGACGAGCCCCAGAG
Found at i:95130 original size:27 final size:27
Alignment explanation
Indices: 95092--95180 Score: 126
Period size: 27 Copynumber: 3.2 Consensus size: 27
95082 GGAGGCCTAA
95092 AGTGCTACCAGTGCTACCAGTGCTACC
1 AGTGCTACCAGTGCTACCAGTGCTACC
95119 AGTGCTACCAGTGCTACCAGTGCTACC
1 AGTGCTACCAGTGCTACCAGTGCTACC
*
95146 AGTGCTACTGCAGTGTTA-CAGTGCTATCGC
1 AGTGCTAC--CAGTGCTACCAGTGCTA-C-C
95176 AGTGC
1 AGTGC
95181 CACTTGGGTG
Statistics
Matches: 57, Mismatches: 1, Indels: 5
0.90 0.02 0.08
Matches are distributed among these distances:
27 35 0.61
28 8 0.14
29 8 0.14
30 6 0.11
ACGTcount: A:0.21, C:0.29, G:0.25, T:0.25
Consensus pattern (27 bp):
AGTGCTACCAGTGCTACCAGTGCTACC
Left flanking sequence: Indices 94592 -- 95091
GTCCTACACCCCCGCCTCTACGTACCCTGCCTGCACCACGCCCGCCTGAGTCCGCCTTCCGTTCT
CAGCCTGGGACGGCTGCAAAGTAACACGTCCGCATCAAACGCGCATACCGTAGAATTTCAACTCA
AATCGACACGTCAATAGATCACCATGGTAAGTCGTTTGCGCCACACCACCGTCCTTTGAGCAAAT
ACTAACGCCCCAGGCCCTTCAGACTCCCAAGCAAAGAGCTGCCAACGCCCGCTTCGAAAAGAAAA
ACGTCAACCAGTGGGGTAAGAAGAAGGTTGTCAAGCAGAAGACCGAGTTCCCGATCTCGAGAGGA
TGGATCGCCGCGTTGGTGTTCTTGGTGTGCGGTGGTGCCGTGTTGGAGATCATCCGCTTGCTCTT
CTAAGACGCCGACCCGGTATCACGCGTGTAGCGTGCCATGTGTTGTACGGGTCATGTGCATGAGT
CCGAGTGCTATCATGAGCTACCAGCTCCTATTACAGGAGGCCTAA
Right flanking sequence: Indices 95181 -- 95680
CACTTGGGTGACAAAGTGTACTACCCAGCACCACTTGGGTGACAGGTGTACTACGCCAGTCCCCA
GTAGTGCTGTGGTGGTGCTCCAGTACCAGTAGTGCTCTAGTAGTGCCCCAGTACCAGTGGCTTTG
CCGCATTCCGTCCCGTGCCCATGACGCTGTACCACACATGTCTCACTATACCGTGATCCCACCGA
TCCACCCTTCACCCATTGTATTATAGTGCTGTTTATTTTAGTTTAATAAAAACAAGCTTATGAAA
GCTCAAAACAAGCTTATGAAGCCTTAAACAAGCCTACGAAAAGCTTTAACCAAGAATATGAAAAG
CTTAACAAGCTCATGAAGGTGCCTGCACCCGTTCCTCCAAACACTCCACCAGGTCTGGCTCGATC
ACCACCCCGTCGAGCAAGTCGATCTCCGCCACCGACCCCACCCGCGGCGGCACCGGCTCCGCAAA
CGGCTTGACCACCGTCACGTCGGACGAGCCCCAGAGCGGCGCCGC
Found at i:95232 original size:30 final size:32
Alignment explanation
Indices: 95180--95239 Score: 97
Period size: 31 Copynumber: 1.9 Consensus size: 32
95170 TATCGCAGTG
95180 CCACTTGGGTGACAAAGTGTACTAC-CCAGCA
1 CCACTTGGGTGACAAAGTGTACTACGCCAGCA
*
95211 CCACTTGGGTGAC-AGGTGTACTACGCCAG
1 CCACTTGGGTGACAAAGTGTACTACGCCAG
95240 TCCCCAGTAG
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
30 10 0.37
31 17 0.63
ACGTcount: A:0.25, C:0.28, G:0.27, T:0.20
Consensus pattern (32 bp):
CCACTTGGGTGACAAAGTGTACTACGCCAGCA
Left flanking sequence: Indices 94680 -- 95179
ACACGTCCGCATCAAACGCGCATACCGTAGAATTTCAACTCAAATCGACACGTCAATAGATCACC
ATGGTAAGTCGTTTGCGCCACACCACCGTCCTTTGAGCAAATACTAACGCCCCAGGCCCTTCAGA
CTCCCAAGCAAAGAGCTGCCAACGCCCGCTTCGAAAAGAAAAACGTCAACCAGTGGGGTAAGAAG
AAGGTTGTCAAGCAGAAGACCGAGTTCCCGATCTCGAGAGGATGGATCGCCGCGTTGGTGTTCTT
GGTGTGCGGTGGTGCCGTGTTGGAGATCATCCGCTTGCTCTTCTAAGACGCCGACCCGGTATCAC
GCGTGTAGCGTGCCATGTGTTGTACGGGTCATGTGCATGAGTCCGAGTGCTATCATGAGCTACCA
GCTCCTATTACAGGAGGCCTAAAGTGCTACCAGTGCTACCAGTGCTACCAGTGCTACCAGTGCTA
CCAGTGCTACCAGTGCTACTGCAGTGTTACAGTGCTATCGCAGTG
Right flanking sequence: Indices 95240 -- 95739
TCCCCAGTAGTGCTGTGGTGGTGCTCCAGTACCAGTAGTGCTCTAGTAGTGCCCCAGTACCAGTG
GCTTTGCCGCATTCCGTCCCGTGCCCATGACGCTGTACCACACATGTCTCACTATACCGTGATCC
CACCGATCCACCCTTCACCCATTGTATTATAGTGCTGTTTATTTTAGTTTAATAAAAACAAGCTT
ATGAAAGCTCAAAACAAGCTTATGAAGCCTTAAACAAGCCTACGAAAAGCTTTAACCAAGAATAT
GAAAAGCTTAACAAGCTCATGAAGGTGCCTGCACCCGTTCCTCCAAACACTCCACCAGGTCTGGC
TCGATCACCACCCCGTCGAGCAAGTCGATCTCCGCCACCGACCCCACCCGCGGCGGCACCGGCTC
CGCAAACGGCTTGACCACCGTCACGTCGGACGAGCCCCAGAGCGGCGCCGCCTCGTCAAACACCG
CAAACGCCACGTTGTTGTTGTTGACCAAGTTCAAAAACGCAAAAC
Found at i:95277 original size:28 final size:28
Alignment explanation
Indices: 95243--95303 Score: 86
Period size: 28 Copynumber: 2.2 Consensus size: 28
95233 ACGCCAGTCC
* * * *
95243 CCAGTAGTGCTGTGGTGGTGCTCCAGTA
1 CCAGTAGTGCTCTAGTAGTGCCCCAGTA
95271 CCAGTAGTGCTCTAGTAGTGCCCCAGTA
1 CCAGTAGTGCTCTAGTAGTGCCCCAGTA
95299 CCAGT
1 CCAGT
95304 GGCTTTGCCG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.18, C:0.26, G:0.30, T:0.26
Consensus pattern (28 bp):
CCAGTAGTGCTCTAGTAGTGCCCCAGTA
Left flanking sequence: Indices 94743 -- 95242
CCATGGTAAGTCGTTTGCGCCACACCACCGTCCTTTGAGCAAATACTAACGCCCCAGGCCCTTCA
GACTCCCAAGCAAAGAGCTGCCAACGCCCGCTTCGAAAAGAAAAACGTCAACCAGTGGGGTAAGA
AGAAGGTTGTCAAGCAGAAGACCGAGTTCCCGATCTCGAGAGGATGGATCGCCGCGTTGGTGTTC
TTGGTGTGCGGTGGTGCCGTGTTGGAGATCATCCGCTTGCTCTTCTAAGACGCCGACCCGGTATC
ACGCGTGTAGCGTGCCATGTGTTGTACGGGTCATGTGCATGAGTCCGAGTGCTATCATGAGCTAC
CAGCTCCTATTACAGGAGGCCTAAAGTGCTACCAGTGCTACCAGTGCTACCAGTGCTACCAGTGC
TACCAGTGCTACCAGTGCTACTGCAGTGTTACAGTGCTATCGCAGTGCCACTTGGGTGACAAAGT
GTACTACCCAGCACCACTTGGGTGACAGGTGTACTACGCCAGTCC
Right flanking sequence: Indices 95304 -- 95803
GGCTTTGCCGCATTCCGTCCCGTGCCCATGACGCTGTACCACACATGTCTCACTATACCGTGATC
CCACCGATCCACCCTTCACCCATTGTATTATAGTGCTGTTTATTTTAGTTTAATAAAAACAAGCT
TATGAAAGCTCAAAACAAGCTTATGAAGCCTTAAACAAGCCTACGAAAAGCTTTAACCAAGAATA
TGAAAAGCTTAACAAGCTCATGAAGGTGCCTGCACCCGTTCCTCCAAACACTCCACCAGGTCTGG
CTCGATCACCACCCCGTCGAGCAAGTCGATCTCCGCCACCGACCCCACCCGCGGCGGCACCGGCT
CCGCAAACGGCTTGACCACCGTCACGTCGGACGAGCCCCAGAGCGGCGCCGCCTCGTCAAACACC
GCAAACGCCACGTTGTTGTTGTTGACCAAGTTCAAAAACGCAAAACACGTGTCGATCTCGGCCTC
GGCCATCGGGTCGGCCCCCGTGGGCGTCGGCAGCGGCAGCGCCCG
Found at i:95489 original size:22 final size:21
Alignment explanation
Indices: 95463--95515 Score: 54
Period size: 22 Copynumber: 2.5 Consensus size: 21
95453 CTTATGAAGC
*
95463 CTTAAACAAGCCTACGAAAAG
1 CTTAAACAAGCATACGAAAAG
* * *
95484 CTTTAACCAAGAATATGAAAAG
1 C-TTAAACAAGCATACGAAAAG
95506 CTT-AACAAGC
1 CTTAAACAAGC
95516 TCATGAAGGT
Statistics
Matches: 25, Mismatches: 6, Indels: 3
0.74 0.18 0.09
Matches are distributed among these distances:
20 5 0.20
21 3 0.12
22 17 0.68
ACGTcount: A:0.47, C:0.21, G:0.13, T:0.19
Consensus pattern (21 bp):
CTTAAACAAGCATACGAAAAG
Left flanking sequence: Indices 94963 -- 95462
AGATCATCCGCTTGCTCTTCTAAGACGCCGACCCGGTATCACGCGTGTAGCGTGCCATGTGTTGT
ACGGGTCATGTGCATGAGTCCGAGTGCTATCATGAGCTACCAGCTCCTATTACAGGAGGCCTAAA
GTGCTACCAGTGCTACCAGTGCTACCAGTGCTACCAGTGCTACCAGTGCTACCAGTGCTACTGCA
GTGTTACAGTGCTATCGCAGTGCCACTTGGGTGACAAAGTGTACTACCCAGCACCACTTGGGTGA
CAGGTGTACTACGCCAGTCCCCAGTAGTGCTGTGGTGGTGCTCCAGTACCAGTAGTGCTCTAGTA
GTGCCCCAGTACCAGTGGCTTTGCCGCATTCCGTCCCGTGCCCATGACGCTGTACCACACATGTC
TCACTATACCGTGATCCCACCGATCCACCCTTCACCCATTGTATTATAGTGCTGTTTATTTTAGT
TTAATAAAAACAAGCTTATGAAAGCTCAAAACAAGCTTATGAAGC
Right flanking sequence: Indices 95516 -- 96015
TCATGAAGGTGCCTGCACCCGTTCCTCCAAACACTCCACCAGGTCTGGCTCGATCACCACCCCGT
CGAGCAAGTCGATCTCCGCCACCGACCCCACCCGCGGCGGCACCGGCTCCGCAAACGGCTTGACC
ACCGTCACGTCGGACGAGCCCCAGAGCGGCGCCGCCTCGTCAAACACCGCAAACGCCACGTTGTT
GTTGTTGACCAAGTTCAAAAACGCAAAACACGTGTCGATCTCGGCCTCGGCCATCGGGTCGGCCC
CCGTGGGCGTCGGCAGCGGCAGCGCCCGGCTCAAGTTGGCCCCGTCGAACCGCGGGTCCTCGGGC
ACCTTGGTCGGCAAGTCGTACTGGAAACTGTGGGCTCCGTTGAGCGTGGACACCACCTTGAGCCT
GTTTTCGCGGTCGAGCACCGCCAACAAGTTGGCCAGCGCCAGGCTCGCGTGGGCGCCCACCGGAG
CGGGGATGGACACGAGCGCGCGTGCGTTGGCCCGTGGGATGATCC
Found at i:96711 original size:21 final size:21
Alignment explanation
Indices: 96685--96729 Score: 72
Period size: 21 Copynumber: 2.1 Consensus size: 21
96675 AACCGGGTGT
*
96685 TGGCGAACCGGTTGGCGTCTG
1 TGGCGAACCGGTTGGCGGCTG
*
96706 TGGCGAACCGGTTGGTGGCTG
1 TGGCGAACCGGTTGGCGGCTG
96727 TGG
1 TGG
96730 TGTTCAGGGT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.09, C:0.20, G:0.47, T:0.24
Consensus pattern (21 bp):
TGGCGAACCGGTTGGCGGCTG
Left flanking sequence: Indices 96185 -- 96684
CCAGAACACCCGGGTGACTACCGCCAGCGTCTTGCCGCGGGTGAACTTGCCCACCAACGCCACCT
CGCGCGGCAACCGGTACAAGTCCCACATGTAGTACGCGTCGCCTCGGGCGCTCACCAGGAGCAAG
TGGAGGTCGTGCGGCAGCAACAGGAGGTGTGACACCCCACCTGGCGGCTTGAACACCGCGAGGGT
GTGCCCGGAGGCGAGGTCCACCACCTTGACGAGCTGGCAGTCGCCGGGCTGCATGTTTTCCGCGG
TCTTCTGGAGCAGCAGCGCCGTCAGCGCCGCGGTCTGGTACAAGAGCCGGCCCACCAGCCGCAGG
ATCAGCAGCGCGCGGTAGTCGGCCAGCGTGCCCTCGGCCACCGCGCGCTTGAGCCGCTTGGAGCT
GGCGGCAGAGAGCCGCACCAACCCGTCGAGTGCCAGCTTGGAGAACAGCAGGAGCACCCGGGCGA
GCAACGGGCCGCGCGGTGGCATTTTGAGCGGGGTGAACCGGGTGT
Right flanking sequence: Indices 96730 -- 97229
TGTTCAGGGTGGCTTCACCGGCCCTGGCCGCATTCAGCTTGGATTCACTGGCCCTGGCTGAGTTC
AGCTTGGCTTCTCTGGAGCCATTCGCCGCGTTCGCTGCGCCCACCGCGTTCGCCTCGCCCCTGGC
GTTCAGCTTGGCCTCGCTGCGGAGCTTGACGTGCTCGGCCCGCGCAGGCGAGTACGCCAACCACG
CACCGTGCACGGCAAACACCGGGACGTTGTGCTTCGTCATCGACGTGGTGACGCTGTGCACGGGC
TCGAGCTTGGCGTTCATCACGTGCACAAGCCCCACCTCGTCGCCCGCGACGATGTAGTGGTCGGA
GACCGCGAGCTCCACCACCTCGTTGCCCACGTCGGCCTCGGCCACGAGCTCGGAGGTGTTCAGGT
CGCTGTAGATGTGGTGCACCTCGAGGCGCGACAGCCGTGCCACCACGAGCAGGAGGTCGGCGGTG
AGGCGCATGTGGGTGATGGGCTGGTGGCTGGAGGCGTCGGAGGTG
Found at i:96796 original size:30 final size:30
Alignment explanation
Indices: 96743--96810 Score: 84
Period size: 30 Copynumber: 2.3 Consensus size: 30
96733 TCAGGGTGGC
*
96743 TTCACCGGCCCTGGCCGCATTCAGCTTGGA
1 TTCACTGGCCCTGGCCGCATTCAGCTTGGA
* *
96773 TTCACTGGCCCTGGCTG-AGTTCAGCTTGGC
1 TTCACTGGCCCTGGCCGCA-TTCAGCTTGGA
*
96803 TTCTCTGG
1 TTCACTGG
96811 AGCCATTCGC
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
29 1 0.03
30 32 0.97
ACGTcount: A:0.10, C:0.32, G:0.28, T:0.29
Consensus pattern (30 bp):
TTCACTGGCCCTGGCCGCATTCAGCTTGGA
Left flanking sequence: Indices 96243 -- 96742
GCCACCTCGCGCGGCAACCGGTACAAGTCCCACATGTAGTACGCGTCGCCTCGGGCGCTCACCAG
GAGCAAGTGGAGGTCGTGCGGCAGCAACAGGAGGTGTGACACCCCACCTGGCGGCTTGAACACCG
CGAGGGTGTGCCCGGAGGCGAGGTCCACCACCTTGACGAGCTGGCAGTCGCCGGGCTGCATGTTT
TCCGCGGTCTTCTGGAGCAGCAGCGCCGTCAGCGCCGCGGTCTGGTACAAGAGCCGGCCCACCAG
CCGCAGGATCAGCAGCGCGCGGTAGTCGGCCAGCGTGCCCTCGGCCACCGCGCGCTTGAGCCGCT
TGGAGCTGGCGGCAGAGAGCCGCACCAACCCGTCGAGTGCCAGCTTGGAGAACAGCAGGAGCACC
CGGGCGAGCAACGGGCCGCGCGGTGGCATTTTGAGCGGGGTGAACCGGGTGTTGGCGAACCGGTT
GGCGTCTGTGGCGAACCGGTTGGTGGCTGTGGTGTTCAGGGTGGC
Right flanking sequence: Indices 96811 -- 97310
AGCCATTCGCCGCGTTCGCTGCGCCCACCGCGTTCGCCTCGCCCCTGGCGTTCAGCTTGGCCTCG
CTGCGGAGCTTGACGTGCTCGGCCCGCGCAGGCGAGTACGCCAACCACGCACCGTGCACGGCAAA
CACCGGGACGTTGTGCTTCGTCATCGACGTGGTGACGCTGTGCACGGGCTCGAGCTTGGCGTTCA
TCACGTGCACAAGCCCCACCTCGTCGCCCGCGACGATGTAGTGGTCGGAGACCGCGAGCTCCACC
ACCTCGTTGCCCACGTCGGCCTCGGCCACGAGCTCGGAGGTGTTCAGGTCGCTGTAGATGTGGTG
CACCTCGAGGCGCGACAGCCGTGCCACCACGAGCAGGAGGTCGGCGGTGAGGCGCATGTGGGTGA
TGGGCTGGTGGCTGGAGGCGTCGGAGGTGGGTGCCAGCGCAGCCAGGGTGCGGGCCAGTTTCTTT
GCCAGCGCGATGTCGAGGCGGTGGACGAGGCACAACTGCGAGCCG
Found at i:97598 original size:28 final size:28
Alignment explanation
Indices: 97566--97624 Score: 75
Period size: 28 Copynumber: 2.1 Consensus size: 28
97556 GCATGGATGG
*
97566 TGGTGGTGAGTAG-GAGGGGGTGATAAGA
1 TGGTGGTGA-TAGAGAGGGGGTGAGAAGA
* *
97594 TGGTGGTGATGGAGAGGGGGTGGGAAGA
1 TGGTGGTGATAGAGAGGGGGTGAGAAGA
97622 TGG
1 TGG
97625 AGATCGTGGA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
27 2 0.07
28 25 0.93
ACGTcount: A:0.22, C:0.00, G:0.58, T:0.20
Consensus pattern (28 bp):
TGGTGGTGATAGAGAGGGGGTGAGAAGA
Left flanking sequence: Indices 97066 -- 97565
CCACCACCTCGTTGCCCACGTCGGCCTCGGCCACGAGCTCGGAGGTGTTCAGGTCGCTGTAGATG
TGGTGCACCTCGAGGCGCGACAGCCGTGCCACCACGAGCAGGAGGTCGGCGGTGAGGCGCATGTG
GGTGATGGGCTGGTGGCTGGAGGCGTCGGAGGTGGGTGCCAGCGCAGCCAGGGTGCGGGCCAGTT
TCTTTGCCAGCGCGATGTCGAGGCGGTGGACGAGGCACAACTGCGAGCCGTCCCAGTCCCAGATC
TCGCCCTGCAGCTGTTCTGGGTAGAGGACGAAGAGCTCGCCGTGGGGGCCGCAGTCCACGAGGGT
GTCGTTGGCGTCGCCGGCGAGGGTGTCTGCGTCGTCGCCGCCGTTGGTGACCTGTTTTATTTTGC
TCCACAGTGCGGTGGCGGTGCCCAAGCGGTGTCCGCGTTTGGGTGATAGTGGTCTAGAGGTTAGT
ATGAGGAGTGGGGGTGGGGGGAAAATGGGGGAGAAGCATGGATGG
Right flanking sequence: Indices 97625 -- 98124
AGATCGTGGATGGTGGTGGATGGATGGTGGATGGTGAAGGATATGGATGGTGGAGGATATGGATG
GTAGATGGTGGATGGTTGTGGATGGTGAGGATGGTGGAGGAGGTCAGAGGAGGTTGGAATCTGGG
ATAATGGTGTGAAGATGGTGGTAGATTAGGTGAAATCAGTGGTAGATTGTGAAGATGGTGGTCGG
ATTAATCACTGTGGGAGGTAGTCTTGGATCAAATGAGAACCGTGGAAACAAGTAAGAAGGAATCA
ACACAGACTTAGCTCTCTTTGTTCACCATGATGTCTTACCTCAGCCTCTTTCACATCTCGCTGTC
TGGTAAGATCGCTGTATCTCTGTTCACCGTACTGTCTTTGCCTCTCTCCTCCTCTCTCACTTTTG
AGTAACCATTTCCCCACTCTCGCCACCAAATCTTCTCAACCAAAGTCTCCCTGCATTCTCCACCC
CGTCCCATCCCATTGCATCCCCCACACCCCCCTTATCGCCCCTGT
Found at i:97655 original size:7 final size:7
Alignment explanation
Indices: 97630--97705 Score: 50
Period size: 7 Copynumber: 10.3 Consensus size: 7
97620 GATGGAGATC
97630 GTGGATG
1 GTGGATG
97637 GTGG-TG
1 GTGGATG
97643 GATGGATG
1 G-TGGATG
97651 GTGGATG
1 GTGGATG
97658 GTGAAGGAT-
1 GT---GGATG
*
97667 ATGGATG
1 GTGGATG
97674 GTGGA-G
1 GTGGATG
97680 GATATGGATG
1 G---TGGATG
*
97690 GTAGATG
1 GTGGATG
97697 GTGGATG
1 GTGGATG
97704 GT
1 GT
97706 TGTGGATGGT
Statistics
Matches: 55, Mismatches: 4, Indels: 20
0.70 0.05 0.25
Matches are distributed among these distances:
6 9 0.16
7 32 0.58
8 3 0.05
9 5 0.09
10 6 0.11
ACGTcount: A:0.21, C:0.00, G:0.51, T:0.28
Consensus pattern (7 bp):
GTGGATG
Left flanking sequence: Indices 97130 -- 97629
GTGGTGCACCTCGAGGCGCGACAGCCGTGCCACCACGAGCAGGAGGTCGGCGGTGAGGCGCATGT
GGGTGATGGGCTGGTGGCTGGAGGCGTCGGAGGTGGGTGCCAGCGCAGCCAGGGTGCGGGCCAGT
TTCTTTGCCAGCGCGATGTCGAGGCGGTGGACGAGGCACAACTGCGAGCCGTCCCAGTCCCAGAT
CTCGCCCTGCAGCTGTTCTGGGTAGAGGACGAAGAGCTCGCCGTGGGGGCCGCAGTCCACGAGGG
TGTCGTTGGCGTCGCCGGCGAGGGTGTCTGCGTCGTCGCCGCCGTTGGTGACCTGTTTTATTTTG
CTCCACAGTGCGGTGGCGGTGCCCAAGCGGTGTCCGCGTTTGGGTGATAGTGGTCTAGAGGTTAG
TATGAGGAGTGGGGGTGGGGGGAAAATGGGGGAGAAGCATGGATGGTGGTGGTGAGTAGGAGGGG
GTGATAAGATGGTGGTGATGGAGAGGGGGTGGGAAGATGGAGATC
Right flanking sequence: Indices 97706 -- 98205
TGTGGATGGTGAGGATGGTGGAGGAGGTCAGAGGAGGTTGGAATCTGGGATAATGGTGTGAAGAT
GGTGGTAGATTAGGTGAAATCAGTGGTAGATTGTGAAGATGGTGGTCGGATTAATCACTGTGGGA
GGTAGTCTTGGATCAAATGAGAACCGTGGAAACAAGTAAGAAGGAATCAACACAGACTTAGCTCT
CTTTGTTCACCATGATGTCTTACCTCAGCCTCTTTCACATCTCGCTGTCTGGTAAGATCGCTGTA
TCTCTGTTCACCGTACTGTCTTTGCCTCTCTCCTCCTCTCTCACTTTTGAGTAACCATTTCCCCA
CTCTCGCCACCAAATCTTCTCAACCAAAGTCTCCCTGCATTCTCCACCCCGTCCCATCCCATTGC
ATCCCCCACACCCCCCTTATCGCCCCTGTCCACGCGGTCCCGCGTCCCGTCGTCTCCGGTGATAA
CGAGTGACCCCACACGTGTGCGGCGGTCTCCCCTTGCAATTGCCC
Found at i:97673 original size:16 final size:16
Alignment explanation
Indices: 97652--97691 Score: 71
Period size: 16 Copynumber: 2.5 Consensus size: 16
97642 GGATGGATGG
97652 TGGATGGTGAAGGATA
1 TGGATGGTGAAGGATA
*
97668 TGGATGGTGGAGGATA
1 TGGATGGTGAAGGATA
97684 TGGATGGT
1 TGGATGGT
97692 AGATGGTGGA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.25, C:0.00, G:0.47, T:0.28
Consensus pattern (16 bp):
TGGATGGTGAAGGATA
Left flanking sequence: Indices 97152 -- 97651
AGCCGTGCCACCACGAGCAGGAGGTCGGCGGTGAGGCGCATGTGGGTGATGGGCTGGTGGCTGGA
GGCGTCGGAGGTGGGTGCCAGCGCAGCCAGGGTGCGGGCCAGTTTCTTTGCCAGCGCGATGTCGA
GGCGGTGGACGAGGCACAACTGCGAGCCGTCCCAGTCCCAGATCTCGCCCTGCAGCTGTTCTGGG
TAGAGGACGAAGAGCTCGCCGTGGGGGCCGCAGTCCACGAGGGTGTCGTTGGCGTCGCCGGCGAG
GGTGTCTGCGTCGTCGCCGCCGTTGGTGACCTGTTTTATTTTGCTCCACAGTGCGGTGGCGGTGC
CCAAGCGGTGTCCGCGTTTGGGTGATAGTGGTCTAGAGGTTAGTATGAGGAGTGGGGGTGGGGGG
AAAATGGGGGAGAAGCATGGATGGTGGTGGTGAGTAGGAGGGGGTGATAAGATGGTGGTGATGGA
GAGGGGGTGGGAAGATGGAGATCGTGGATGGTGGTGGATGGATGG
Right flanking sequence: Indices 97692 -- 98191
AGATGGTGGATGGTTGTGGATGGTGAGGATGGTGGAGGAGGTCAGAGGAGGTTGGAATCTGGGAT
AATGGTGTGAAGATGGTGGTAGATTAGGTGAAATCAGTGGTAGATTGTGAAGATGGTGGTCGGAT
TAATCACTGTGGGAGGTAGTCTTGGATCAAATGAGAACCGTGGAAACAAGTAAGAAGGAATCAAC
ACAGACTTAGCTCTCTTTGTTCACCATGATGTCTTACCTCAGCCTCTTTCACATCTCGCTGTCTG
GTAAGATCGCTGTATCTCTGTTCACCGTACTGTCTTTGCCTCTCTCCTCCTCTCTCACTTTTGAG
TAACCATTTCCCCACTCTCGCCACCAAATCTTCTCAACCAAAGTCTCCCTGCATTCTCCACCCCG
TCCCATCCCATTGCATCCCCCACACCCCCCTTATCGCCCCTGTCCACGCGGTCCCGCGTCCCGTC
GTCTCCGGTGATAACGAGTGACCCCACACGTGTGCGGCGGTCTCC
Found at i:97788 original size:21 final size:19
Alignment explanation
Indices: 97762--97816 Score: 67
Period size: 21 Copynumber: 2.8 Consensus size: 19
97752 GGGATAATGG
97762 TGTGAAGATGGTGGTAGAT
1 TGTGAAGATGGTGGTAGAT
*
97781 TAGGTGAA-ATCAGTGGTAGAT
1 T--GTGAAGAT-GGTGGTAGAT
97802 TGTGAAGATGGTGGT
1 TGTGAAGATGGTGGT
97817 CGGATTAATC
Statistics
Matches: 30, Mismatches: 2, Indels: 8
0.75 0.05 0.20
Matches are distributed among these distances:
19 11 0.37
20 4 0.13
21 15 0.50
ACGTcount: A:0.27, C:0.02, G:0.40, T:0.31
Consensus pattern (19 bp):
TGTGAAGATGGTGGTAGAT
Left flanking sequence: Indices 97262 -- 97761
CTTTGCCAGCGCGATGTCGAGGCGGTGGACGAGGCACAACTGCGAGCCGTCCCAGTCCCAGATCT
CGCCCTGCAGCTGTTCTGGGTAGAGGACGAAGAGCTCGCCGTGGGGGCCGCAGTCCACGAGGGTG
TCGTTGGCGTCGCCGGCGAGGGTGTCTGCGTCGTCGCCGCCGTTGGTGACCTGTTTTATTTTGCT
CCACAGTGCGGTGGCGGTGCCCAAGCGGTGTCCGCGTTTGGGTGATAGTGGTCTAGAGGTTAGTA
TGAGGAGTGGGGGTGGGGGGAAAATGGGGGAGAAGCATGGATGGTGGTGGTGAGTAGGAGGGGGT
GATAAGATGGTGGTGATGGAGAGGGGGTGGGAAGATGGAGATCGTGGATGGTGGTGGATGGATGG
TGGATGGTGAAGGATATGGATGGTGGAGGATATGGATGGTAGATGGTGGATGGTTGTGGATGGTG
AGGATGGTGGAGGAGGTCAGAGGAGGTTGGAATCTGGGATAATGG
Right flanking sequence: Indices 97817 -- 98316
CGGATTAATCACTGTGGGAGGTAGTCTTGGATCAAATGAGAACCGTGGAAACAAGTAAGAAGGAA
TCAACACAGACTTAGCTCTCTTTGTTCACCATGATGTCTTACCTCAGCCTCTTTCACATCTCGCT
GTCTGGTAAGATCGCTGTATCTCTGTTCACCGTACTGTCTTTGCCTCTCTCCTCCTCTCTCACTT
TTGAGTAACCATTTCCCCACTCTCGCCACCAAATCTTCTCAACCAAAGTCTCCCTGCATTCTCCA
CCCCGTCCCATCCCATTGCATCCCCCACACCCCCCTTATCGCCCCTGTCCACGCGGTCCCGCGTC
CCGTCGTCTCCGGTGATAACGAGTGACCCCACACGTGTGCGGCGGTCTCCCCTTGCAATTGCCCC
AGGGCCAGCAGCGTACTTACGTTCTGTCGATTCGCACTTCGTTGACGGCAGTCATGGTGGGCCGT
AACTCAATATTGCGGTGGTAGGCTTATCTCCTTATCTACGGCGGG
Found at i:98832 original size:23 final size:23
Alignment explanation
Indices: 98806--98899 Score: 98
Period size: 23 Copynumber: 4.0 Consensus size: 23
98796 AGGTGGGGAT
* *
98806 GAGTCAGAGGGAGCTGAGAGTGG
1 GAGTCAAAGGAAGCTGAGAGTGG
* * *
98829 GAGTCAAAGGGAGCGGAAAGTGG
1 GAGTCAAAGGAAGCTGAGAGTGG
* *
98852 GAGTCAAAGAAAAGCTAAGAGTGG
1 GAGTCAAAG-GAAGCTGAGAGTGG
*
98876 GAATCAGAAGGAAGCTGAGAGTGG
1 GAGTCA-AAGGAAGCTGAGAGTGG
98900 AATTCGGTAG
Statistics
Matches: 58, Mismatches: 11, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
23 29 0.50
24 26 0.45
25 3 0.05
ACGTcount: A:0.36, C:0.09, G:0.44, T:0.12
Consensus pattern (23 bp):
GAGTCAAAGGAAGCTGAGAGTGG
Left flanking sequence: Indices 98306 -- 98805
TCTACGGCGGGACCGGGGGACCCAACCCTGTTTATTACCGCGCACTCCCGATCACGTGGGAGGGG
CTCGAGGTAGACCGATAATATTTACCTATTCGAGGCGGCAGGCAAGCGAGCGTACGCGCGCGGAT
GAATGACCGGTTACCCCACCAAGTGACGTGCCGCCCACAGCCGGCAACCCTCGATCACGCTTGCC
GCAACACCACCGCGTGACCCCGGGCATTGCAATGACAACGCAGCACATCTCGTATATAGGACCAT
GGTAGTTACCAGAGGTTGCTGTGAGGTAGGCGTAGACGTGGTGGACGTGGGTGGAGCCTGGGCAG
GGTTCAACTCGAATGATAAGCACCAGGTGCGTTTGTGTGCGCCAGAGCAAGGAACGCTGCCCGCA
CACGCAAGCGTCACTCAAGGCGAGGTCGGCGAAGGTCTGGATCACTGGTCAGGGGCACGCGCCAC
CAACGGTGCGACATGGCTATTGTCTAAGTAGGGGTAGGTGGGGAT
Right flanking sequence: Indices 98900 -- 99399
AATTCGGTAGAGTACCGTGCCACGAGCTCTTGAATAAAAAGTGTTCTGGATCGGTGTGGTGGTGG
TAGATCGCGTAGGTTTTGGAGATTGCACCAAACGGCTAGATACGACGTGAGCGTTCGTAGCGTAT
CGCACGGCTAACGAAGGTGTCAAGAGGTCATCATTTCGACCACTTTTATGCTGCGTGTAACCTTG
CGGTTCGCAGCCAGCTACCAGACAGCCACGGCGTGTCTAGGCAGGCGCAAGCGAGCGAACTTTAC
CGGTGGGGTGGATCTAATGACTCAGCGAGAGATCTGGGGCCACAGGAGGTGGCGTGGTAGAAAGC
AGCCAGATAGTAGTCCCCGAGTGGCTTCACAGTGGTTCCCTGGGCAGACCTAACCGTTTCCATAA
TTGTAATTACGTAGACGACGTCCCTGTGCATTACTCGTCACAATCACCCGACACGTCATGGCTGG
TCAACACCTAGTCCACAACGTAGTCCCTAGTCCACACCGTAGTCC
Found at i:99385 original size:19 final size:19
Alignment explanation
Indices: 99361--99423 Score: 81
Period size: 19 Copynumber: 3.2 Consensus size: 19
99351 CTGGTCAACA
99361 CCTAGTCCACAACGTAGTC
1 CCTAGTCCACAACGTAGTC
*
99380 CCTAGTCCACACCGTAGTC
1 CCTAGTCCACAACGTAGTC
* *
99399 CCTCCGTCCACCACTGTAGTC
1 CCT-AGTCCACAAC-GTAGTC
99420 CCTA
1 CCTA
99424 CGCCCACCAC
Statistics
Matches: 37, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
19 21 0.57
20 7 0.19
21 9 0.24
ACGTcount: A:0.21, C:0.43, G:0.14, T:0.22
Consensus pattern (19 bp):
CCTAGTCCACAACGTAGTC
Left flanking sequence: Indices 98861 -- 99360
AAAAGCTAAGAGTGGGAATCAGAAGGAAGCTGAGAGTGGAATTCGGTAGAGTACCGTGCCACGAG
CTCTTGAATAAAAAGTGTTCTGGATCGGTGTGGTGGTGGTAGATCGCGTAGGTTTTGGAGATTGC
ACCAAACGGCTAGATACGACGTGAGCGTTCGTAGCGTATCGCACGGCTAACGAAGGTGTCAAGAG
GTCATCATTTCGACCACTTTTATGCTGCGTGTAACCTTGCGGTTCGCAGCCAGCTACCAGACAGC
CACGGCGTGTCTAGGCAGGCGCAAGCGAGCGAACTTTACCGGTGGGGTGGATCTAATGACTCAGC
GAGAGATCTGGGGCCACAGGAGGTGGCGTGGTAGAAAGCAGCCAGATAGTAGTCCCCGAGTGGCT
TCACAGTGGTTCCCTGGGCAGACCTAACCGTTTCCATAATTGTAATTACGTAGACGACGTCCCTG
TGCATTACTCGTCACAATCACCCGACACGTCATGGCTGGTCAACA
Right flanking sequence: Indices 99424 -- 99923
CGCCCACCACCCTGGCCCACCCCACCCATTTCCGCACTTTCCAAAAATAGCAATAACCACCAAAC
CACAACACGCCCGATCCACGCCTGAGCCACCGGGCAACCTCCATGCAACCGAACGTAATTTTACC
CCAGCGTGGTACGATCGGCGCTACCAGCACCACGCACCATTACACAGTGGTTTATGCAACACCCG
GAGCAGTGGCCGCGGCTCCACCCATTGCGATGCGGCCCCGACCACCACCACACATTACTGTCCAC
CACCACTAAGCCCCAGCGCCCCCACCGCGACCGCCCACCCCCCGGGCCCGATCGATCTGGGCTAA
ATATACTTTGATGAATCAGCGCTAAATGTGCAGGCAGCCATGCACGTACCACCAGCAATCACCGA
TGACAACACAAGATCCAAGCGACAGCCACGCCAGCCACGACAACCACCACACACAACAGACACAA
CAGAAACCACACTCGCAACATACTTACCCCTACCACACCCCCCCC
Found at i:99419 original size:21 final size:19
Alignment explanation
Indices: 99365--99433 Score: 68
Period size: 21 Copynumber: 3.5 Consensus size: 19
99355 TCAACACCTA
* *
99365 GTCCACAACGTAGTCCCTA
1 GTCCACCACGTAGTCCCTC
99384 GTCCA-CACCGTAGTCCCTCC
1 GTCCACCA-CGTAGTCCCT-C
99404 GTCCACCACTGTAGTCCCTAC
1 GTCCACCAC-GTAGTCCCT-C
*
99425 GCCCACCAC
1 GTCCACCAC
99434 CCTGGCCCAC
Statistics
Matches: 42, Mismatches: 4, Indels: 6
0.81 0.08 0.12
Matches are distributed among these distances:
18 1 0.02
19 15 0.36
20 6 0.14
21 20 0.48
ACGTcount: A:0.20, C:0.46, G:0.14, T:0.19
Consensus pattern (19 bp):
GTCCACCACGTAGTCCCTC
Left flanking sequence: Indices 98865 -- 99364
GCTAAGAGTGGGAATCAGAAGGAAGCTGAGAGTGGAATTCGGTAGAGTACCGTGCCACGAGCTCT
TGAATAAAAAGTGTTCTGGATCGGTGTGGTGGTGGTAGATCGCGTAGGTTTTGGAGATTGCACCA
AACGGCTAGATACGACGTGAGCGTTCGTAGCGTATCGCACGGCTAACGAAGGTGTCAAGAGGTCA
TCATTTCGACCACTTTTATGCTGCGTGTAACCTTGCGGTTCGCAGCCAGCTACCAGACAGCCACG
GCGTGTCTAGGCAGGCGCAAGCGAGCGAACTTTACCGGTGGGGTGGATCTAATGACTCAGCGAGA
GATCTGGGGCCACAGGAGGTGGCGTGGTAGAAAGCAGCCAGATAGTAGTCCCCGAGTGGCTTCAC
AGTGGTTCCCTGGGCAGACCTAACCGTTTCCATAATTGTAATTACGTAGACGACGTCCCTGTGCA
TTACTCGTCACAATCACCCGACACGTCATGGCTGGTCAACACCTA
Right flanking sequence: Indices 99434 -- 99933
CCTGGCCCACCCCACCCATTTCCGCACTTTCCAAAAATAGCAATAACCACCAAACCACAACACGC
CCGATCCACGCCTGAGCCACCGGGCAACCTCCATGCAACCGAACGTAATTTTACCCCAGCGTGGT
ACGATCGGCGCTACCAGCACCACGCACCATTACACAGTGGTTTATGCAACACCCGGAGCAGTGGC
CGCGGCTCCACCCATTGCGATGCGGCCCCGACCACCACCACACATTACTGTCCACCACCACTAAG
CCCCAGCGCCCCCACCGCGACCGCCCACCCCCCGGGCCCGATCGATCTGGGCTAAATATACTTTG
ATGAATCAGCGCTAAATGTGCAGGCAGCCATGCACGTACCACCAGCAATCACCGATGACAACACA
AGATCCAAGCGACAGCCACGCCAGCCACGACAACCACCACACACAACAGACACAACAGAAACCAC
ACTCGCAACATACTTACCCCTACCACACCCCCCCCCTACCCACCC
Found at i:99932 original size:15 final size:16
Alignment explanation
Indices: 99905--99935 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
99895 AACATACTTA
99905 CCCCTACCACACCCCC
1 CCCCTACCACACCCCC
99921 CCCCTACC-CACCCCC
1 CCCCTACCACACCCCC
99936 TACCTTCCTC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 7 0.47
16 8 0.53
ACGTcount: A:0.16, C:0.77, G:0.00, T:0.06
Consensus pattern (16 bp):
CCCCTACCACACCCCC
Left flanking sequence: Indices 99405 -- 99904
TCCACCACTGTAGTCCCTACGCCCACCACCCTGGCCCACCCCACCCATTTCCGCACTTTCCAAAA
ATAGCAATAACCACCAAACCACAACACGCCCGATCCACGCCTGAGCCACCGGGCAACCTCCATGC
AACCGAACGTAATTTTACCCCAGCGTGGTACGATCGGCGCTACCAGCACCACGCACCATTACACA
GTGGTTTATGCAACACCCGGAGCAGTGGCCGCGGCTCCACCCATTGCGATGCGGCCCCGACCACC
ACCACACATTACTGTCCACCACCACTAAGCCCCAGCGCCCCCACCGCGACCGCCCACCCCCCGGG
CCCGATCGATCTGGGCTAAATATACTTTGATGAATCAGCGCTAAATGTGCAGGCAGCCATGCACG
TACCACCAGCAATCACCGATGACAACACAAGATCCAAGCGACAGCCACGCCAGCCACGACAACCA
CCACACACAACAGACACAACAGAAACCACACTCGCAACATACTTA
Right flanking sequence: Indices 99936 -- 100435
TACCTTCCTCCTCGCGCCAGCCCCGGCTAGCGATGTTCCCTGCATAATGCTGGTGTTTTGGTTTT
CCCCAATCGGGCTGCCAGGACAATCTGAAGCGGCCTTGATGGATTGTGAAATGCTGGTGAACAAA
ATTTAAAACACCTACCCTTGCGAGCTCCGCCAGCCAAATCCCGCCTACGAACCGCATACCCTCGA
GGCACCACACCCCAGCTAGCCTGTTTGACGCCCAAACCGCGTTAGCTCTTTTCCATTAATTGCAT
CGATCCGCGACGGATCCCCATTGACCCTCCCTGCCATGTCCCACCCACCGTTGCCGTTTAAGGTG
AAAACCATTGTGTCGTGGGCCGGCGAGGAAGACGGAGACCTCGGGTTCATCGAAAACGAGATTGT
GGAGGTGTACCTGGTGGTCGACGACCTCTGGTGGTCGGGCAAGTTGCGTCGCAACAACGCCGAGG
GCATTTTCCCCAAAGACTACGTAGAAGTGATCGAGCAGAAGGGCC
Found at i:100543 original size:18 final size:18
Alignment explanation
Indices: 100520--100618 Score: 125
Period size: 18 Copynumber: 5.7 Consensus size: 18
100510 CAGACACCGG
*
100520 TGAACCAAATGAGCCAGA
1 TGAACCACATGAGCCAGA
100538 TGAACCACATGAGCCAGA
1 TGAACCACATGAGCCAGA
*
100556 TGAACCACATGAGCCAAA
1 TGAACCACATGAGCCAGA
100574 TGAACCACATGAGCCA-A
1 TGAACCACATGAGCCAGA
*
100591 --AACCACATGAACCA-A
1 TGAACCACATGAGCCAGA
*
100606 GGGAACCACATGA
1 -TGAACCACATGA
100619 ACCAAAACCA
Statistics
Matches: 75, Mismatches: 3, Indels: 6
0.89 0.04 0.07
Matches are distributed among these distances:
15 14 0.19
17 1 0.01
18 60 0.80
ACGTcount: A:0.43, C:0.27, G:0.19, T:0.10
Consensus pattern (18 bp):
TGAACCACATGAGCCAGA
Left flanking sequence: Indices 100020 -- 100519
ACAATCTGAAGCGGCCTTGATGGATTGTGAAATGCTGGTGAACAAAATTTAAAACACCTACCCTT
GCGAGCTCCGCCAGCCAAATCCCGCCTACGAACCGCATACCCTCGAGGCACCACACCCCAGCTAG
CCTGTTTGACGCCCAAACCGCGTTAGCTCTTTTCCATTAATTGCATCGATCCGCGACGGATCCCC
ATTGACCCTCCCTGCCATGTCCCACCCACCGTTGCCGTTTAAGGTGAAAACCATTGTGTCGTGGG
CCGGCGAGGAAGACGGAGACCTCGGGTTCATCGAAAACGAGATTGTGGAGGTGTACCTGGTGGTC
GACGACCTCTGGTGGTCGGGCAAGTTGCGTCGCAACAACGCCGAGGGCATTTTCCCCAAAGACTA
CGTAGAAGTGATCGAGCAGAAGGGCCTCCCGCACCTGCTGCTGACGATGTCGCTCGGCAAGCCCC
ACACCCCGCAGAAAGAGGCCCAGCTGCCCATGAACCAGACACCGG
Right flanking sequence: Indices 100619 -- 101118
ACCAAAACCACATGAACCACCACACCCTGGTCAACCAGCGCATGGCCATGTCCGCGTCCCAGCCG
CTCCGCCTGCGCGCATCGTACCTCGACGACGACGACGACGAGGCCCACAACTACCTGTTCGACGA
GGCCTACGCACGCCGGCTGCTGCCCAAACGCCACCAGGGCCTGCGGCTCGCCCAGCTCGAGCGCG
AGCTCGCCGACCGCCAGCGCGAGATCGCCGCGTTCAAGTCCCACTCCGCCAAGAGCACCCGCCAG
CTGCCGCTGCCGCTGCCACACCACCGGCGGTCGCGGCGCCACCAGGAGGGCGCGCTTGCCAAGCT
GCGGCTGTGCTACGACTTGGACGACAGCCACCGCGCGTACGTGGCCGCCAACACCACCATCCAGC
TGGAGTTGGACACCTACGGCGAGCTGGCGCTGCTGGAGCTGGACGACGACGACTTGGCCGCGCGC
CGGGCCGCGCTCGAGCGCGAGTTGCAGCGGTTGAAGCGCAAGGAG
Found at i:100549 original size:9 final size:9
Alignment explanation
Indices: 100520--100638 Score: 99
Period size: 9 Copynumber: 13.9 Consensus size: 9
100510 CAGACACCGG
*
100520 TGAACCAAA
1 TGAACCACA
* *
100529 TGAGCCAGA
1 TGAACCACA
100538 TGAACCACA
1 TGAACCACA
* *
100547 TGAGCCAGA
1 TGAACCACA
100556 TGAACCACA
1 TGAACCACA
* *
100565 TGAGCCAAA
1 TGAACCACA
100574 TGAACCACA
1 TGAACCACA
*
100583 TGAGCCA-A
1 TGAACCACA
100591 --AACCACA
1 TGAACCACA
100598 TGAACCA-A
1 TGAACCACA
*
100606 GGGAACCACA
1 -TGAACCACA
100616 TGAACCA-A
1 TGAACCACA
100624 --AACCACA
1 TGAACCACA
100631 TGAACCAC
1 TGAACCAC
100639 CACACCCTGG
Statistics
Matches: 86, Mismatches: 16, Indels: 16
0.73 0.14 0.14
Matches are distributed among these distances:
6 9 0.10
7 2 0.02
8 3 0.03
9 71 0.83
10 1 0.01
ACGTcount: A:0.45, C:0.29, G:0.17, T:0.09
Consensus pattern (9 bp):
TGAACCACA
Left flanking sequence: Indices 100020 -- 100519
ACAATCTGAAGCGGCCTTGATGGATTGTGAAATGCTGGTGAACAAAATTTAAAACACCTACCCTT
GCGAGCTCCGCCAGCCAAATCCCGCCTACGAACCGCATACCCTCGAGGCACCACACCCCAGCTAG
CCTGTTTGACGCCCAAACCGCGTTAGCTCTTTTCCATTAATTGCATCGATCCGCGACGGATCCCC
ATTGACCCTCCCTGCCATGTCCCACCCACCGTTGCCGTTTAAGGTGAAAACCATTGTGTCGTGGG
CCGGCGAGGAAGACGGAGACCTCGGGTTCATCGAAAACGAGATTGTGGAGGTGTACCTGGTGGTC
GACGACCTCTGGTGGTCGGGCAAGTTGCGTCGCAACAACGCCGAGGGCATTTTCCCCAAAGACTA
CGTAGAAGTGATCGAGCAGAAGGGCCTCCCGCACCTGCTGCTGACGATGTCGCTCGGCAAGCCCC
ACACCCCGCAGAAAGAGGCCCAGCTGCCCATGAACCAGACACCGG
Right flanking sequence: Indices 100639 -- 101138
CACACCCTGGTCAACCAGCGCATGGCCATGTCCGCGTCCCAGCCGCTCCGCCTGCGCGCATCGTA
CCTCGACGACGACGACGACGAGGCCCACAACTACCTGTTCGACGAGGCCTACGCACGCCGGCTGC
TGCCCAAACGCCACCAGGGCCTGCGGCTCGCCCAGCTCGAGCGCGAGCTCGCCGACCGCCAGCGC
GAGATCGCCGCGTTCAAGTCCCACTCCGCCAAGAGCACCCGCCAGCTGCCGCTGCCGCTGCCACA
CCACCGGCGGTCGCGGCGCCACCAGGAGGGCGCGCTTGCCAAGCTGCGGCTGTGCTACGACTTGG
ACGACAGCCACCGCGCGTACGTGGCCGCCAACACCACCATCCAGCTGGAGTTGGACACCTACGGC
GAGCTGGCGCTGCTGGAGCTGGACGACGACGACTTGGCCGCGCGCCGGGCCGCGCTCGAGCGCGA
GTTGCAGCGGTTGAAGCGCAAGGAGGACCGCCGCAAACTGAAGCT
Found at i:100600 original size:33 final size:33
Alignment explanation
Indices: 100522--100633 Score: 143
Period size: 33 Copynumber: 3.3 Consensus size: 33
100512 GACACCGGTG
* *
100522 AACCAAATGAGCCAGATGAACCACATGAGCCAGA
1 AACCACATGAGCCAAATGAACCACATGAGCCA-A
100556 TGAACCACATGAGCCAAATGAACCACATGAGCCAA
1 --AACCACATGAGCCAAATGAACCACATGAGCCAA
* ** *
100591 AACCACATGAACCAAGGGAACCACATGAACCAA
1 AACCACATGAGCCAAATGAACCACATGAGCCAA
100624 AACCACATGA
1 AACCACATGA
100634 ACCACCACAC
Statistics
Matches: 70, Mismatches: 6, Indels: 3
0.89 0.08 0.04
Matches are distributed among these distances:
33 39 0.56
35 1 0.01
36 30 0.43
ACGTcount: A:0.46, C:0.29, G:0.17, T:0.09
Consensus pattern (33 bp):
AACCACATGAGCCAAATGAACCACATGAGCCAA
Left flanking sequence: Indices 100022 -- 100521
AATCTGAAGCGGCCTTGATGGATTGTGAAATGCTGGTGAACAAAATTTAAAACACCTACCCTTGC
GAGCTCCGCCAGCCAAATCCCGCCTACGAACCGCATACCCTCGAGGCACCACACCCCAGCTAGCC
TGTTTGACGCCCAAACCGCGTTAGCTCTTTTCCATTAATTGCATCGATCCGCGACGGATCCCCAT
TGACCCTCCCTGCCATGTCCCACCCACCGTTGCCGTTTAAGGTGAAAACCATTGTGTCGTGGGCC
GGCGAGGAAGACGGAGACCTCGGGTTCATCGAAAACGAGATTGTGGAGGTGTACCTGGTGGTCGA
CGACCTCTGGTGGTCGGGCAAGTTGCGTCGCAACAACGCCGAGGGCATTTTCCCCAAAGACTACG
TAGAAGTGATCGAGCAGAAGGGCCTCCCGCACCTGCTGCTGACGATGTCGCTCGGCAAGCCCCAC
ACCCCGCAGAAAGAGGCCCAGCTGCCCATGAACCAGACACCGGTG
Right flanking sequence: Indices 100634 -- 101133
ACCACCACACCCTGGTCAACCAGCGCATGGCCATGTCCGCGTCCCAGCCGCTCCGCCTGCGCGCA
TCGTACCTCGACGACGACGACGACGAGGCCCACAACTACCTGTTCGACGAGGCCTACGCACGCCG
GCTGCTGCCCAAACGCCACCAGGGCCTGCGGCTCGCCCAGCTCGAGCGCGAGCTCGCCGACCGCC
AGCGCGAGATCGCCGCGTTCAAGTCCCACTCCGCCAAGAGCACCCGCCAGCTGCCGCTGCCGCTG
CCACACCACCGGCGGTCGCGGCGCCACCAGGAGGGCGCGCTTGCCAAGCTGCGGCTGTGCTACGA
CTTGGACGACAGCCACCGCGCGTACGTGGCCGCCAACACCACCATCCAGCTGGAGTTGGACACCT
ACGGCGAGCTGGCGCTGCTGGAGCTGGACGACGACGACTTGGCCGCGCGCCGGGCCGCGCTCGAG
CGCGAGTTGCAGCGGTTGAAGCGCAAGGAGGACCGCCGCAAACTG
Found at i:100634 original size:15 final size:15
Alignment explanation
Indices: 100576--100637 Score: 88
Period size: 15 Copynumber: 3.9 Consensus size: 15
100566 GAGCCAAATG
*
100576 AACCACATGAGCCAA
1 AACCACATGAACCAA
100591 AACCACATGAACCAA
1 AACCACATGAACCAA
100606 GGGAACCACATGAACCAA
1 ---AACCACATGAACCAA
100624 AACCACATGAACCA
1 AACCACATGAACCA
100638 CCACACCCTG
Statistics
Matches: 43, Mismatches: 1, Indels: 6
0.86 0.02 0.12
Matches are distributed among these distances:
15 28 0.65
18 15 0.35
ACGTcount: A:0.48, C:0.32, G:0.13, T:0.06
Consensus pattern (15 bp):
AACCACATGAACCAA
Left flanking sequence: Indices 100076 -- 100575
CCTACCCTTGCGAGCTCCGCCAGCCAAATCCCGCCTACGAACCGCATACCCTCGAGGCACCACAC
CCCAGCTAGCCTGTTTGACGCCCAAACCGCGTTAGCTCTTTTCCATTAATTGCATCGATCCGCGA
CGGATCCCCATTGACCCTCCCTGCCATGTCCCACCCACCGTTGCCGTTTAAGGTGAAAACCATTG
TGTCGTGGGCCGGCGAGGAAGACGGAGACCTCGGGTTCATCGAAAACGAGATTGTGGAGGTGTAC
CTGGTGGTCGACGACCTCTGGTGGTCGGGCAAGTTGCGTCGCAACAACGCCGAGGGCATTTTCCC
CAAAGACTACGTAGAAGTGATCGAGCAGAAGGGCCTCCCGCACCTGCTGCTGACGATGTCGCTCG
GCAAGCCCCACACCCCGCAGAAAGAGGCCCAGCTGCCCATGAACCAGACACCGGTGAACCAAATG
AGCCAGATGAACCACATGAGCCAGATGAACCACATGAGCCAAATG
Right flanking sequence: Indices 100638 -- 101137
CCACACCCTGGTCAACCAGCGCATGGCCATGTCCGCGTCCCAGCCGCTCCGCCTGCGCGCATCGT
ACCTCGACGACGACGACGACGAGGCCCACAACTACCTGTTCGACGAGGCCTACGCACGCCGGCTG
CTGCCCAAACGCCACCAGGGCCTGCGGCTCGCCCAGCTCGAGCGCGAGCTCGCCGACCGCCAGCG
CGAGATCGCCGCGTTCAAGTCCCACTCCGCCAAGAGCACCCGCCAGCTGCCGCTGCCGCTGCCAC
ACCACCGGCGGTCGCGGCGCCACCAGGAGGGCGCGCTTGCCAAGCTGCGGCTGTGCTACGACTTG
GACGACAGCCACCGCGCGTACGTGGCCGCCAACACCACCATCCAGCTGGAGTTGGACACCTACGG
CGAGCTGGCGCTGCTGGAGCTGGACGACGACGACTTGGCCGCGCGCCGGGCCGCGCTCGAGCGCG
AGTTGCAGCGGTTGAAGCGCAAGGAGGACCGCCGCAAACTGAAGC
Found at i:103180 original size:17 final size:17
Alignment explanation
Indices: 103155--103189 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
103145 GGAGAAGGGA
*
103155 AGAGTTAAGAAGAGAAT
1 AGAGGTAAGAAGAGAAT
103172 AGAGGTAAGAAGAGAAT
1 AGAGGTAAGAAGAGAAT
103189 A
1 A
103190 TGATTCGAGC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.54, C:0.00, G:0.31, T:0.14
Consensus pattern (17 bp):
AGAGGTAAGAAGAGAAT
Left flanking sequence: Indices 102655 -- 103154
GAGCTCGCGTTGGTGATTCCGTTGTACCACCAGGGCACCCTGAAGCCCACGCGGTTCATTCCGCG
CTTCCCCACCGTCCAGGCCCACAACAACGATCTCTACGTCAAGATGCCCCAGACGGCCGAGTTGG
TCAAGGGCAACGCCTACAACTTTGACGTGCACGCGCACCCGTCGCGCGGGATCAACCTGGGGCTG
GCGATGATGAACGCCGACTTCAAGATGGTGGTGGAGCTGCCGCTGGGCAAGTACTACAACCTCCG
CCCGGAGTCGTCCGCGGCCGCGGCCACCAGCTACACCGCCAACATCAAGTGCGTGGAGCCGGGCA
CCTACCGCGGGCTTGTGATTGGTGACTCGGGCAACAGCTGGTATGTTTTCACCCAGTGGGAGTGC
AAGTGAGCATGGTGATGGTAGATGACAGCATACATTAATAATTCATGAGTAGTAATAGATGCCAA
CAAGGATGGAGAAGAGAAGGTGGAGAGATGAGAATGGAGAAGGGA
Right flanking sequence: Indices 103190 -- 103689
TGATTCGAGCTACAGCCGTATGGACCTTTGTTTCGGTCTGAGATCCTCGCTTGTCCCTGCATATG
AATGGCTGCAAATGGTTCCACAAGCACATTATCCCGTAGAGGCATAATAGCGAGGAGGGTTTTGT
GATGCGTACAATGAGACAATAGAGTGGAAGATTGGTGGGATTCACAGCTTAAGACGGTTGGTGGG
AGATTGAGTCTAACAAATGATTTGGCAATTCAGGGCTCATACAGTGGTGATTGTGTTTCGGTAAC
GCTAGCTGGGGTATTAAAACCCAGAGATGGCAAAGCGAAAGCGCATACTGGGGTTTTTGCCCATA
TAGATCAAGGTTACCACATTTTGCAACCACACGTGATGTGTTATCACGTGACCAAATATTCAGCG
ACAGAGGTTTGCCCGTGTCCCCGTTTTCCCGAAATTTTTTTCAGCCGTCCAACAGCGTCAGGGTG
GTCTCTCAGCCTCAAGTAGCCCATTGTGGTTATTTTTGCCACCAT
Found at i:107538 original size:6 final size:6
Alignment explanation
Indices: 107529--107555 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
107519 GTCCTCCATC
107529 TCCTCG TCCTCG TCCTCG TCCTCG TCC
1 TCCTCG TCCTCG TCCTCG TCCTCG TCC
107556 ATCGCCGCCT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.00, C:0.52, G:0.15, T:0.33
Consensus pattern (6 bp):
TCCTCG
Left flanking sequence: Indices 107029 -- 107528
AGATACCAGGAATGGTTATATTACGGTTTAAGGAATAGTCAAAAGTAGTGGGTTAGATTGGGTGA
GACCAGTGATTGGCTTTCTTATGGAGTTATAGTTAGCGGGAGAGCCGAGTGGATAGCGACTCAAT
CAGGTTGGCACTTTATCATATTGAGATTCAACCATCGATAGATAGAGATTTATACCTGAAAAAAC
TTCGATAGGCCTCTCGACAGTTCGATACTTACCAGATCGACCGATCAGTTGATGGATTTCCAATC
AGCTCGAATATCGACTAACGCACTGCTCAAAACCGACTACCCACATCTCTAAACCATGGTTCTCC
CCCATTAATCCTCGCATCCACGTCTCTCTAATAAGTCCCAATTAATATACATACGAATTATAAAA
AAGCAATATCCAATGCATGCAGCTAGTTCCGTCTCTTCTTCTTGTTCTTGAGCACCACCTTCTGG
GCCACCTCTTCCTCCTCGGACGACACCTCCATCTCGTCCTCCATC
Right flanking sequence: Indices 107556 -- 108055
ATCGCCGCCTCCTTGCGGGCGGCCTTCTCGGCCTCGCGGCGCAACTCGACGTCGCGCATCCGCAA
CAACTCGGGGTGGGACTCGACCAACTTGCGGTCCATCGCCAACTGGCGCTCCTTGTTGCCCTTCA
TGCGGTTCTTGTAGAACGCACGCTCGCGCTTCTGGCGGATCTCCTCGATTCTCAGCATCGCCTTC
AAGGTGGTGGCAACAAGATCGCGGTTGTAGCGCACCGGCACGTTGCGGCGGTTGGCAAACGTCAA
CGTCAGGTCCACCACCAACTCCTTGCCCGCGGCCTTGCGGAACGCCTTCGTCCACTTGAGCTTCC
GGGGATTACGGCGCTGCTTGAAGTTCTTGTGGCACTTGGAGCGGCAGAAGCGGAACTCCTTGGCG
TCGTTACGCACAAACATGATCCCGTGGAGGGGGTACACGGGCGACGAACAGAAATGGCATTGGTA
CACTCTCATGGTCTCGTGATGGCCCTGGAAATTTCGATGCGCGAT
Found at i:109746 original size:12 final size:12
Alignment explanation
Indices: 109725--109760 Score: 54
Period size: 12 Copynumber: 3.0 Consensus size: 12
109715 ACGAAGGGAT
109725 GGGGCAGTGACA
1 GGGGCAGTGACA
* *
109737 GGGGCGGTGACG
1 GGGGCAGTGACA
109749 GGGGCAGTGACA
1 GGGGCAGTGACA
109761 CGAGACATGG
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.19, C:0.17, G:0.56, T:0.08
Consensus pattern (12 bp):
GGGGCAGTGACA
Left flanking sequence: Indices 109225 -- 109724
GGCTTTCGCCATCGTCCTCGTCGTGCTTGACCACCACCGACGTGGTGTCGACAAACAGTGTCTTT
GTCTGCTGGTCGCTGAACACAAAGAACTTGATGAACACGATGATCACCACTATCACCAGCACCTG
GCCGAGGATGAGCCCCTGGGTGAACGACCACCCGGACTTGCCGGAGCTGTCGAGCGAAAGCTCGA
GCTGGAGCTCCTCTCGTAGCTGCTGCAAAAGACTGTGTTCTGCCACCGACATCGCAGCGTCCATG
TCTGTGGTGGGTCTTTGTGCCTGCATGGTTCAATCAGGCCACGCGCTACCATCTGAGGACGGCTC
TGGTTACGGGGCTTGGGTGGGCTGGGTGTTTCTAGCTTCCCAGAGTGTTTCAGCCCCTTACTAGA
CAGTACTGGTTTAGGCAGTGCAGCCGGTTGCGGTGTAGTTGCGATGAAATTGCGTAAAATTACGT
TATGGTAACTGCTATTGTAGGCTTATGAGGCAGTGACGAAGGGAT
Right flanking sequence: Indices 109761 -- 110260
CGAGACATGGGCACGAGGCGACGCGCCAAGAGGACCGTCGCTTTGCGGTAGAACGTGTTCTTGGC
TGCCTTATCACACAGCCACCAGATTTCTTGCGAGCCAAGAAACGGACAATAAACCCGGGTCACAA
TGACAGCAGGCGGTTGCACAAACAATCTGCGAAGCGAGTCTTGGCCTGGGACGGATGCCAAATAC
GGGTTTAAGCAGGAGAGTCACTGCCGGAGTTATTTTCGAAATTGGGACACCGGCACCTCTCTTTT
TGGGCCATTATCTGGAGGAGATAATGCTTGCCAAGATTTGGCCGGGACGTGGAAGGCGTTGCACA
GGGCTGGAGCAATTGGTATTGTTATGTTGTCAACCCAATTGGGGGAACTTGGGCGCAATTGGCTG
AATTGAAGGAATTGGGTTGATTGGACGAATTGAGCTGGTGGGTGGGAGGTCTCTGGTAAACAGGA
ATCGAACCATTTTGGAGACCACAAAGCCAGAGTGTGGGGTTGGAG
Found at i:119089 original size:16 final size:16
Alignment explanation
Indices: 119059--119114 Score: 87
Period size: 16 Copynumber: 3.6 Consensus size: 16
119049 GCGAACAATA
*
119059 GTCGGTGCG-GACCCG
1 GTCGGTGTGCGACCCG
119074 GTCGGTGTGCGACCCG
1 GTCGGTGTGCGACCCG
119090 GTCGGTGTGCGACCCG
1 GTCGGTGTGCGACCCG
*
119106 GTTGGTGTG
1 GTCGGTGTG
119115 GTGTGTTGAC
Statistics
Matches: 38, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
15 8 0.21
16 30 0.79
ACGTcount: A:0.05, C:0.27, G:0.46, T:0.21
Consensus pattern (16 bp):
GTCGGTGTGCGACCCG
Left flanking sequence: Indices 118559 -- 119058
ACGCACCCCTACGCACTCCAAAGCCACGGGCGAGACGATCGATATTTTTGTGACGGCGACCTGGG
GAGGCCGGGTGCATCTGTGTCCCGCCACCCCGTTTGAGCAGGGTGCTGGCGGCGATGGCAGCGAT
CCATTGTTACCCGCAGTTTGGCACTGGTGCGGGCAGCACGTGACGCGATGCCACTATAAAAGCAG
GCCATCGCGGAAACGAAAAAGTAACCAGAAAGTTAACACCGGATAATTTGGCAGAGCCGCCGTGG
TGGCCCGTCCCCTGGCTTTTGTCGGCCTGCCTATTAATTTAGGAGGTTTGGCGCTAGCAAAGAGC
AGGCGACCGGTGGCAGTTCTGTTGACAAACTTCCGGGAGATCGAAGGTGGCTCTTTAAGTATGCA
CCGAGGGTTTAAACCTCTTTGTATCCCGTAGGGTCGCAACATTGTAATGTGTAGCATACTCTGGT
GAAACGTCGGGCCGGCCATGGCCATCGCAGCCATCGCGAACAATA
Right flanking sequence: Indices 119115 -- 119614
GTGTGTTGACCGGGCCCGGGCTCACGGTTAGCAACGGAGCTACAATGGAGCTACAATGGGGCTGC
AAAGGTCGAGGCCATTGTGAGTGGTTCGCCTGCTGCTGTCTTTTCTCTGCTACTGGGTCCGTCCC
GTCCCTTACATCACGCCCACCGCGTCTCGCGGCTCCCCCACCGTGTCCGCCGTGGCTGTGGGGCA
CTTGTACCCCTGACCTCCTAGATGCTCTCTTGTGCGTGAAATCACCACCATTACGTAATCGTGCT
TGGCCACCGCAAAACACCACCAGCCGCCAAACCGACACCCCACCCCACCAATGGCCCTCCAGCAG
GGCCAATGGGTCTCTCTCCGTAGCCTCTGTCCGGATCACCCACCCCCGGTGCCCGCCAGAGCTTT
TGTGCGCCGCCCACCACCCCTTCCACGGCTGACCGCACGAACCATTTTGTTCGCACCAAACTCAC
TTGTCTGGACCACGTCAGTTGCTATGTTTCGCAAACGACCGCCGC
Found at i:126614 original size:16 final size:16
Alignment explanation
Indices: 126595--126654 Score: 66
Period size: 16 Copynumber: 3.8 Consensus size: 16
126585 GGCTACTAGA
* * *
126595 TTGGAAGACTTCTTTC
1 TTGGCAGACTCCTATC
* *
126611 TTGGTAGGCTCCTATC
1 TTGGCAGACTCCTATC
*
126627 TTGGCAGACTCCTGTC
1 TTGGCAGACTCCTATC
126643 TTGGCAGACTCC
1 TTGGCAGACTCC
126655 AATCCTACCC
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
16 37 1.00
ACGTcount: A:0.15, C:0.27, G:0.23, T:0.35
Consensus pattern (16 bp):
TTGGCAGACTCCTATC
Left flanking sequence: Indices 126095 -- 126594
GCATGCCGACGTGTCTCCACCACGAACATTGACTTCTAAAACACTCCTCAAACTTGCCCGAACCC
CGTGGAATTCGCACAATCGTCTCAGACAGCACAATGCCCGCAGACGCATCGGGCGAAAACAACTC
ATGCACGCGGCGAAAACCACGCATGAGCTATAAGAAGGCGGACCTTAAGACCAGTGCATTAACAA
TACAACACGCATACAATGAGAAACGAAATGATTAACTACTGCGGGCTGGCCTGTGGCTCCTCGTG
CGAGACCACGTGCAAGTGTTCGTCGTGCAAGGACGCGGGCTCGTCCCCGTGCGGCTGTGGCTGCA
AATCGAAGCCTGGCTGCTGCTAACCCCACGACCCCACAATCTATAGTGAATGCATAATGACTCGA
ACTGATGGCTTGAATGTATGATCTGGATCTGGTAACTCCTAGGTTTATGGACTGCTATCGTAGTA
GACGCCTAGGTTGGAAACAGACTTCATTCTTGGTAGGCTACTAGA
Right flanking sequence: Indices 126655 -- 127154
AATCCTACCCCTATCTTGGAGGCCTCATACCTTGGTACATTTCTGTCTTAGTAGACTCATATCTT
GGTAGATTTCTATCTTAGTAGACCCATACCTTAGTAGATTTCTATCATTATAGACTTTCATCTTG
GTAGACTCCTATCCTAGACCCATACCCTAGACTCCTTCATGTTCCCAGACTCCTATCATGCTCCT
ACCTCCTATCATTCTCCTACACTCCTAAGCGACCTCACGGCAGATCCAGCCACTTTTCCACGTAA
ATCATTACTATCTATAATTAAAAGTACTGCTCCTTAAAGGCAAACAGCTGGGTCGCAGGCTGGTA
CACCCCGTACTGGAGCTTGCGCGACCCGGCCAAGAGCGGGCCCATGTTAATCACCTTGCACTTGA
AGTAACTCACCTCAAACGCCGCACACGTCGGGTCCTGGAGAATCATCACCAGGGGCATGGGCTCC
AACCGGAGCACATGGTTGTACGCCGCGTCCACCAACCGCTTGGAC
Found at i:126636 original size:32 final size:32
Alignment explanation
Indices: 126567--126646 Score: 97
Period size: 32 Copynumber: 2.5 Consensus size: 32
126557 AGGTTGGAAA
*
126567 CAGACTTCATTCTTGGTAGGCTACTAGATTGG
1 CAGACTTCTTTCTTGGTAGGCTACTAGATTGG
* * **
126599 AAGACTTCTTTCTTGGTAGGCTCCTATCTTGG
1 CAGACTTCTTTCTTGGTAGGCTACTAGATTGG
* *
126631 CAGACTCCTGTCTTGG
1 CAGACTTCTTTCTTGG
126647 CAGACTCCAA
Statistics
Matches: 40, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
32 40 1.00
ACGTcount: A:0.17, C:0.23, G:0.24, T:0.36
Consensus pattern (32 bp):
CAGACTTCTTTCTTGGTAGGCTACTAGATTGG
Left flanking sequence: Indices 126067 -- 126566
CTGGTTTGAAAGCTGTTTCAGGTTTGCTGCATGCCGACGTGTCTCCACCACGAACATTGACTTCT
AAAACACTCCTCAAACTTGCCCGAACCCCGTGGAATTCGCACAATCGTCTCAGACAGCACAATGC
CCGCAGACGCATCGGGCGAAAACAACTCATGCACGCGGCGAAAACCACGCATGAGCTATAAGAAG
GCGGACCTTAAGACCAGTGCATTAACAATACAACACGCATACAATGAGAAACGAAATGATTAACT
ACTGCGGGCTGGCCTGTGGCTCCTCGTGCGAGACCACGTGCAAGTGTTCGTCGTGCAAGGACGCG
GGCTCGTCCCCGTGCGGCTGTGGCTGCAAATCGAAGCCTGGCTGCTGCTAACCCCACGACCCCAC
AATCTATAGTGAATGCATAATGACTCGAACTGATGGCTTGAATGTATGATCTGGATCTGGTAACT
CCTAGGTTTATGGACTGCTATCGTAGTAGACGCCTAGGTTGGAAA
Right flanking sequence: Indices 126647 -- 127146
CAGACTCCAATCCTACCCCTATCTTGGAGGCCTCATACCTTGGTACATTTCTGTCTTAGTAGACT
CATATCTTGGTAGATTTCTATCTTAGTAGACCCATACCTTAGTAGATTTCTATCATTATAGACTT
TCATCTTGGTAGACTCCTATCCTAGACCCATACCCTAGACTCCTTCATGTTCCCAGACTCCTATC
ATGCTCCTACCTCCTATCATTCTCCTACACTCCTAAGCGACCTCACGGCAGATCCAGCCACTTTT
CCACGTAAATCATTACTATCTATAATTAAAAGTACTGCTCCTTAAAGGCAAACAGCTGGGTCGCA
GGCTGGTACACCCCGTACTGGAGCTTGCGCGACCCGGCCAAGAGCGGGCCCATGTTAATCACCTT
GCACTTGAAGTAACTCACCTCAAACGCCGCACACGTCGGGTCCTGGAGAATCATCACCAGGGGCA
TGGGCTCCAACCGGAGCACATGGTTGTACGCCGCGTCCACCAACC
Found at i:126721 original size:32 final size:32
Alignment explanation
Indices: 126678--126775 Score: 135
Period size: 32 Copynumber: 3.1 Consensus size: 32
126668 TCTTGGAGGC
* *
126678 CTCATACCTTGGTACATTTCTGTCTTAGTAGA
1 CTCATACCTTGGTAGATTTCTATCTTAGTAGA
*
126710 CTCATATCTTGGTAGATTTCTATCTTAGTAGA
1 CTCATACCTTGGTAGATTTCTATCTTAGTAGA
* *
126742 CCCATACCTTAGTAGATTTCTATCATTA-TAGA
1 CTCATACCTTGGTAGATTTCTATC-TTAGTAGA
126774 CT
1 CT
126776 TTCATCTTGG
Statistics
Matches: 58, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
32 55 0.95
33 3 0.05
ACGTcount: A:0.26, C:0.20, G:0.13, T:0.41
Consensus pattern (32 bp):
CTCATACCTTGGTAGATTTCTATCTTAGTAGA
Left flanking sequence: Indices 126178 -- 126677
GTCTCAGACAGCACAATGCCCGCAGACGCATCGGGCGAAAACAACTCATGCACGCGGCGAAAACC
ACGCATGAGCTATAAGAAGGCGGACCTTAAGACCAGTGCATTAACAATACAACACGCATACAATG
AGAAACGAAATGATTAACTACTGCGGGCTGGCCTGTGGCTCCTCGTGCGAGACCACGTGCAAGTG
TTCGTCGTGCAAGGACGCGGGCTCGTCCCCGTGCGGCTGTGGCTGCAAATCGAAGCCTGGCTGCT
GCTAACCCCACGACCCCACAATCTATAGTGAATGCATAATGACTCGAACTGATGGCTTGAATGTA
TGATCTGGATCTGGTAACTCCTAGGTTTATGGACTGCTATCGTAGTAGACGCCTAGGTTGGAAAC
AGACTTCATTCTTGGTAGGCTACTAGATTGGAAGACTTCTTTCTTGGTAGGCTCCTATCTTGGCA
GACTCCTGTCTTGGCAGACTCCAATCCTACCCCTATCTTGGAGGC
Right flanking sequence: Indices 126776 -- 127275
TTCATCTTGGTAGACTCCTATCCTAGACCCATACCCTAGACTCCTTCATGTTCCCAGACTCCTAT
CATGCTCCTACCTCCTATCATTCTCCTACACTCCTAAGCGACCTCACGGCAGATCCAGCCACTTT
TCCACGTAAATCATTACTATCTATAATTAAAAGTACTGCTCCTTAAAGGCAAACAGCTGGGTCGC
AGGCTGGTACACCCCGTACTGGAGCTTGCGCGACCCGGCCAAGAGCGGGCCCATGTTAATCACCT
TGCACTTGAAGTAACTCACCTCAAACGCCGCACACGTCGGGTCCTGGAGAATCATCACCAGGGGC
ATGGGCTCCAACCGGAGCACATGGTTGTACGCCGCGTCCACCAACCGCTTGGACGGGAGGAACGG
CTGCATGGTGCCCTGGTCGAGCAACGTCTTCACAAGCCGGCGCGCCTGGATGGTGGTGTTGGGCA
ACCGCTCGCCCTTGAGCCTGATGGCTGCTTTGAGCCGTTCGTCCT
Found at i:126724 original size:16 final size:16
Alignment explanation
Indices: 126700--126757 Score: 64
Period size: 16 Copynumber: 3.6 Consensus size: 16
126690 TACATTTCTG
126700 TCTTAGTAGACTCATA
1 TCTTAGTAGACTCATA
* *
126716 TCTTGGTAGATTTC-TA
1 TCTTAGTAGA-CTCATA
*
126732 TCTTAGTAGACCCATA
1 TCTTAGTAGACTCATA
*
126748 CCTTAGTAGA
1 TCTTAGTAGA
126758 TTTCTATCAT
Statistics
Matches: 34, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
15 1 0.03
16 31 0.91
17 2 0.06
ACGTcount: A:0.28, C:0.19, G:0.16, T:0.38
Consensus pattern (16 bp):
TCTTAGTAGACTCATA
Left flanking sequence: Indices 126200 -- 126699
CAGACGCATCGGGCGAAAACAACTCATGCACGCGGCGAAAACCACGCATGAGCTATAAGAAGGCG
GACCTTAAGACCAGTGCATTAACAATACAACACGCATACAATGAGAAACGAAATGATTAACTACT
GCGGGCTGGCCTGTGGCTCCTCGTGCGAGACCACGTGCAAGTGTTCGTCGTGCAAGGACGCGGGC
TCGTCCCCGTGCGGCTGTGGCTGCAAATCGAAGCCTGGCTGCTGCTAACCCCACGACCCCACAAT
CTATAGTGAATGCATAATGACTCGAACTGATGGCTTGAATGTATGATCTGGATCTGGTAACTCCT
AGGTTTATGGACTGCTATCGTAGTAGACGCCTAGGTTGGAAACAGACTTCATTCTTGGTAGGCTA
CTAGATTGGAAGACTTCTTTCTTGGTAGGCTCCTATCTTGGCAGACTCCTGTCTTGGCAGACTCC
AATCCTACCCCTATCTTGGAGGCCTCATACCTTGGTACATTTCTG
Right flanking sequence: Indices 126758 -- 127257
TTTCTATCATTATAGACTTTCATCTTGGTAGACTCCTATCCTAGACCCATACCCTAGACTCCTTC
ATGTTCCCAGACTCCTATCATGCTCCTACCTCCTATCATTCTCCTACACTCCTAAGCGACCTCAC
GGCAGATCCAGCCACTTTTCCACGTAAATCATTACTATCTATAATTAAAAGTACTGCTCCTTAAA
GGCAAACAGCTGGGTCGCAGGCTGGTACACCCCGTACTGGAGCTTGCGCGACCCGGCCAAGAGCG
GGCCCATGTTAATCACCTTGCACTTGAAGTAACTCACCTCAAACGCCGCACACGTCGGGTCCTGG
AGAATCATCACCAGGGGCATGGGCTCCAACCGGAGCACATGGTTGTACGCCGCGTCCACCAACCG
CTTGGACGGGAGGAACGGCTGCATGGTGCCCTGGTCGAGCAACGTCTTCACAAGCCGGCGCGCCT
GGATGGTGGTGTTGGGCAACCGCTCGCCCTTGAGCCTGATGGCTG
Found at i:126789 original size:32 final size:31
Alignment explanation
Indices: 126685--126789 Score: 99
Period size: 32 Copynumber: 3.3 Consensus size: 31
126675 GGCCTCATAC
* *
126685 CTTGGTACATTTCTGTCTTAGTAGAC-TCATAT
1 CTTGGTAGATTTCTATCTTAGTAGACTTC--AT
*
126717 CTTGGTAGATTTCTATCTTAGTAGAC-CCAT
1 CTTGGTAGATTTCTATCTTAGTAGACTTCAT
*
126747 ACCTTAGTAGATTTCTATCATTA-TAGACTTTCAT
1 --CTTGGTAGATTTCTATC-TTAGTAGAC-TTCAT
126781 CTTGGTAGA
1 CTTGGTAGA
126790 CTCCTATCCT
Statistics
Matches: 62, Mismatches: 6, Indels: 10
0.79 0.08 0.13
Matches are distributed among these distances:
30 2 0.03
32 54 0.87
33 3 0.05
34 3 0.05
ACGTcount: A:0.25, C:0.18, G:0.15, T:0.42
Consensus pattern (31 bp):
CTTGGTAGATTTCTATCTTAGTAGACTTCAT
Left flanking sequence: Indices 126185 -- 126684
ACAGCACAATGCCCGCAGACGCATCGGGCGAAAACAACTCATGCACGCGGCGAAAACCACGCATG
AGCTATAAGAAGGCGGACCTTAAGACCAGTGCATTAACAATACAACACGCATACAATGAGAAACG
AAATGATTAACTACTGCGGGCTGGCCTGTGGCTCCTCGTGCGAGACCACGTGCAAGTGTTCGTCG
TGCAAGGACGCGGGCTCGTCCCCGTGCGGCTGTGGCTGCAAATCGAAGCCTGGCTGCTGCTAACC
CCACGACCCCACAATCTATAGTGAATGCATAATGACTCGAACTGATGGCTTGAATGTATGATCTG
GATCTGGTAACTCCTAGGTTTATGGACTGCTATCGTAGTAGACGCCTAGGTTGGAAACAGACTTC
ATTCTTGGTAGGCTACTAGATTGGAAGACTTCTTTCTTGGTAGGCTCCTATCTTGGCAGACTCCT
GTCTTGGCAGACTCCAATCCTACCCCTATCTTGGAGGCCTCATAC
Right flanking sequence: Indices 126790 -- 127289
CTCCTATCCTAGACCCATACCCTAGACTCCTTCATGTTCCCAGACTCCTATCATGCTCCTACCTC
CTATCATTCTCCTACACTCCTAAGCGACCTCACGGCAGATCCAGCCACTTTTCCACGTAAATCAT
TACTATCTATAATTAAAAGTACTGCTCCTTAAAGGCAAACAGCTGGGTCGCAGGCTGGTACACCC
CGTACTGGAGCTTGCGCGACCCGGCCAAGAGCGGGCCCATGTTAATCACCTTGCACTTGAAGTAA
CTCACCTCAAACGCCGCACACGTCGGGTCCTGGAGAATCATCACCAGGGGCATGGGCTCCAACCG
GAGCACATGGTTGTACGCCGCGTCCACCAACCGCTTGGACGGGAGGAACGGCTGCATGGTGCCCT
GGTCGAGCAACGTCTTCACAAGCCGGCGCGCCTGGATGGTGGTGTTGGGCAACCGCTCGCCCTTG
AGCCTGATGGCTGCTTTGAGCCGTTCGTCCTGGTCGTGTGGCATG
Found at i:126855 original size:18 final size:19
Alignment explanation
Indices: 126810--126876 Score: 75
Period size: 18 Copynumber: 3.6 Consensus size: 19
126800 AGACCCATAC
* *
126810 CCTAGACTCCT-TCATGTT
1 CCTACACTCCTATCATGCT
* *
126828 CCCAGACTCCTATCATGCT
1 CCTACACTCCTATCATGCT
*
126847 CCTAC-CTCCTATCATTCT
1 CCTACACTCCTATCATGCT
126865 CCTACACTCCTA
1 CCTACACTCCTA
126877 AGCGACCTCA
Statistics
Matches: 42, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
18 27 0.64
19 15 0.36
ACGTcount: A:0.19, C:0.42, G:0.06, T:0.33
Consensus pattern (19 bp):
CCTACACTCCTATCATGCT
Left flanking sequence: Indices 126310 -- 126809
AAACGAAATGATTAACTACTGCGGGCTGGCCTGTGGCTCCTCGTGCGAGACCACGTGCAAGTGTT
CGTCGTGCAAGGACGCGGGCTCGTCCCCGTGCGGCTGTGGCTGCAAATCGAAGCCTGGCTGCTGC
TAACCCCACGACCCCACAATCTATAGTGAATGCATAATGACTCGAACTGATGGCTTGAATGTATG
ATCTGGATCTGGTAACTCCTAGGTTTATGGACTGCTATCGTAGTAGACGCCTAGGTTGGAAACAG
ACTTCATTCTTGGTAGGCTACTAGATTGGAAGACTTCTTTCTTGGTAGGCTCCTATCTTGGCAGA
CTCCTGTCTTGGCAGACTCCAATCCTACCCCTATCTTGGAGGCCTCATACCTTGGTACATTTCTG
TCTTAGTAGACTCATATCTTGGTAGATTTCTATCTTAGTAGACCCATACCTTAGTAGATTTCTAT
CATTATAGACTTTCATCTTGGTAGACTCCTATCCTAGACCCATAC
Right flanking sequence: Indices 126877 -- 127376
AGCGACCTCACGGCAGATCCAGCCACTTTTCCACGTAAATCATTACTATCTATAATTAAAAGTAC
TGCTCCTTAAAGGCAAACAGCTGGGTCGCAGGCTGGTACACCCCGTACTGGAGCTTGCGCGACCC
GGCCAAGAGCGGGCCCATGTTAATCACCTTGCACTTGAAGTAACTCACCTCAAACGCCGCACACG
TCGGGTCCTGGAGAATCATCACCAGGGGCATGGGCTCCAACCGGAGCACATGGTTGTACGCCGCG
TCCACCAACCGCTTGGACGGGAGGAACGGCTGCATGGTGCCCTGGTCGAGCAACGTCTTCACAAG
CCGGCGCGCCTGGATGGTGGTGTTGGGCAACCGCTCGCCCTTGAGCCTGATGGCTGCTTTGAGCC
GTTCGTCCTGGTCGTGTGGCATGGCGTCCTCCTCCGCGGCCGCAGCGTTCATCTGCTCGACGTCG
TTGGCAAAAATGATGTCGTTGCGCTTGAACTTGGTCATGTAGTCG
Found at i:130488 original size:15 final size:15
Alignment explanation
Indices: 130468--130519 Score: 86
Period size: 15 Copynumber: 3.5 Consensus size: 15
130458 GATTTGTAGC
130468 TGGGTTGGTAACTGG
1 TGGGTTGGTAACTGG
130483 TGGGTTGGTAACTGG
1 TGGGTTGGTAACTGG
* *
130498 TAGGTTGGTAATTGG
1 TGGGTTGGTAACTGG
130513 TGGGTTG
1 TGGGTTG
130520 ATATTCAGTG
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
15 34 1.00
ACGTcount: A:0.13, C:0.04, G:0.46, T:0.37
Consensus pattern (15 bp):
TGGGTTGGTAACTGG
Left flanking sequence: Indices 129968 -- 130467
ATACTTTTTGGTGAGCTGGTCGAGCTGGAACCGCTGGTTTTCAATCTTGGTGGCGAGATCGCGGC
TCTGGTGCTTCCGCTCGCGGTCCAGACGCTCACGGGCCTCCCATTCTGCGTGGAGGCGCTCTTTT
TCGGCTGTGATCGCCTCCTTTAGTCTCTGGTCAAAGTCGCGGCTCGCCAGGAGCTCGGTTTCGCG
CCGGAGACGGTTTTCAAGGCTCTCCTGCTCCTTTTCGAGCCGTTTTTCAAGCTCTTCGCGCTCCT
GGCGCCGCTGGGACTCGAGCCGGTCGAGTTCCTGGCGGTGGAGAAGCCTTTGCTGCAGCAATTCC
AGCTGGAGCTGCTCGATCTTGCGGTCTCGCCGGTCCAAGTCACTTTTGAGCTGGATGGTGTCGCG
GTTGTGCTGGTTGCGCGCCCGCTGGAGCTCGTCCTGGGCTTGTGAGAGCTCTGTGGCCAAGTTGG
AGCCCGCCCAGTCCGTCGGGGTGGGGTAATCGGTGGATTTGTAGC
Right flanking sequence: Indices 130520 -- 131019
ATATTCAGTGGGCGGATAATCGGCGGGTTTGTGGGTGAAATCGTCGCCGTTTATCAGCGGGTAAA
GACTTCCCGCGGCCTTTAAGCGTCTGTTCTTCTCGATGAGCTCGTCCACCACGTCGTCCGAGCTG
GAGCTCGGAGCAGTGGGGTTGGGGATGAGGGACTTGAGCAGTGCCCAGAGGCCAGGGTGGGAGCT
GGGCTTCTTGGGCTCGGGCTCAGGTTTGCTGATGCGAAACGCCGAGGGAGCCCGGTAGCGTGGAG
GAGACGCTATCGGTTCTGTGAACTTGGGGAGGGACCATGCGGGCTCGGGGCGTGCTGTGTAGGGA
GTTGGCGGTTTGTAGGAGTAGTCCAGTGCAGAGAACTCCCCTGGAATGTGCGCAGGCGGTGCGGA
CGCGTACTGGCTCAGGCGTGAGTTCCACTGCCTCAGGAGCCGGCCCATGATGAGTTGATTGTTTA
CAGGATGCGCGACGCGTGTGAAAAACGCGTCAAGAACGGTGAGAG
Found at i:134548 original size:120 final size:120
Alignment explanation
Indices: 134059--134523 Score: 734
Period size: 120 Copynumber: 3.9 Consensus size: 120
134049 TTTAGGGAGA
* ** * * * * * *
134059 GGTGAGCTGGTGGACCACCTTGTCGCCCTCGGTGAGGGGGAAGGCAAGGGTGTCCACAACGTCCT
1 GGTGAGCTGGTGAAGAACCTTGTCGCCCTCGGTAAGAGGGAAGCCAAGAGTGTCAACAGCGTCCT
* *
134124 T-AGCGTCCTGCTGGACCTGGTCGTGAGCGTCGGAGATCACAGATCTCTTGGGCTC
66 TGA-CATCCTGCTGGACCTGGTCGTGAGCGTCAGAGATCACAGATCTCTTGGGCTC
*
134179 GGTGAGCTGGTGAAGAACCTTGTCACCCTCGGTAAGAGGGAAGCCAAGAGTGTCAACAGCGTCCT
1 GGTGAGCTGGTGAAGAACCTTGTCGCCCTCGGTAAGAGGGAAGCCAAGAGTGTCAACAGCGTCCT
*
134244 TGACGTCCTGCTGGACCTGGTCGTGAGCGTCAGAGATCACAGATCTCTTGGGCTC
66 TGACATCCTGCTGGACCTGGTCGTGAGCGTCAGAGATCACAGATCTCTTGGGCTC
* *
134299 GGTGAGCTGGTGAAGAACCTTGTCGCCCTCGGTGAGGGGGAAGCCAAGAGTGTCAACAGCGTCCT
1 GGTGAGCTGGTGAAGAACCTTGTCGCCCTCGGTAAGAGGGAAGCCAAGAGTGTCAACAGCGTCCT
* * *
134364 TAACATCCTGCTGAACCTGTTCGTGAGCGTCAGAGATCACAGATCTCTTGGGCTC
66 TGACATCCTGCTGGACCTGGTCGTGAGCGTCAGAGATCACAGATCTCTTGGGCTC
134419 GGTGAGCTGGTGAAGAACCTTGTCGCCCTCGGTAAGAGGGAAGCCAAGAGTGTCAACAGCGTCCT
1 GGTGAGCTGGTGAAGAACCTTGTCGCCCTCGGTAAGAGGGAAGCCAAGAGTGTCAACAGCGTCCT
* *
134484 TGACATCTTGCTGGACCTGGTCGTGAGCGTCAGAAATCAC
66 TGACATCCTGCTGGACCTGGTCGTGAGCGTCAGAGATCAC
134524 CGACTTCTTG
Statistics
Matches: 319, Mismatches: 25, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
120 318 1.00
121 1 0.00
ACGTcount: A:0.21, C:0.25, G:0.32, T:0.22
Consensus pattern (120 bp):
GGTGAGCTGGTGAAGAACCTTGTCGCCCTCGGTAAGAGGGAAGCCAAGAGTGTCAACAGCGTCCT
TGACATCCTGCTGGACCTGGTCGTGAGCGTCAGAGATCACAGATCTCTTGGGCTC
Left flanking sequence: Indices 133559 -- 134058
GGAGACGATTTCCGAGCTGGAGTTCAACCAGGACTTCAGCCGTCCTGCGGGCCCACCTCCTCCCA
AAAAGGAGAACTACGGTGACCGCGGGTACGACCAGCCCAACTACGGGGCTCCTATGCAGCCGCAG
TACTCGAACCAGTCGTACGGGGGCTATGCGCAGTACCCTCCTCCCTCCACCAACTACTACCCGCC
CCAGCAGTACCAGCAGGCGCCCCAGCAGGCGCCTCAGCCTGCGCCCGAACAGGGCCAGCCTCCCA
AGGAGCACGGCCACTTGCGCAAGTTTGGGGGCAAGTTGGGTAACGCTGCCATCTTTGGTGCCGGT
GCCACCATCGGTAGCGACATTGTCAACTCGATTTTTTAACGGATACAGCGTAATGAATAAGGTAT
AATTTGGGCTATACAAAAGGTCAAGACGACTAGAACGAAAGAGTGCGAAAGGAGTGTGCGAAGGG
TATCGATTAGACTGAAAAACTAAATCATAGGCACGTTTAGGGAGA
Right flanking sequence: Indices 134524 -- 135023
CGACTTCTTGGCGATAGTGGGCTGGGGAGCGGGAGCCTGAGACTCGCCGCCGATCCCGATCTCAC
CACCGATCCCAAACCCGGTGTGGATGTCACCAAGGCTACCAGTGAAGCCAGCTTCAGCCTGGAAC
TCGCCCTCGGGCTTGGGGAGGAATACGGGAGCAGCGGCGGTGGCCACGATGGCAGCAGCGATAGA
AACGAGAGAAGAGAATTGCATTGGGGTGGTTGTGGTCAGGAACACCAGGAACCAGGCTATTTATA
TTGTCGAAACAACCACGGTGGCCCTGCTTTTGCTTTTGTGGTGTTGAGGGGTTCACTCAAACAAT
AGCCACATGGAATGGGTGTGGTGCCTTCGGCTGTGGGTATGAATCTTGTGACTGCTTGGGGCGTC
TAAATGGCTGCAAAATGGTCTACGCGAAACGCTAGGATTCCGCGTAGTGATGGCCATGGTCGAAA
ACCGAGCCTCTACTATTACTACACCTTAAGCTGGTGAGCAAATTT
Found at i:138079 original size:11 final size:11
Alignment explanation
Indices: 138061--138099 Score: 69
Period size: 11 Copynumber: 3.5 Consensus size: 11
138051 CGCCCATCCA
138061 CTCACCCATAT
1 CTCACCCATAT
*
138072 CCCACCCATAT
1 CTCACCCATAT
138083 CTCACCCATAT
1 CTCACCCATAT
138094 CTCACC
1 CTCACC
138100 ACTACTCCAG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
11 26 1.00
ACGTcount: A:0.26, C:0.51, G:0.00, T:0.23
Consensus pattern (11 bp):
CTCACCCATAT
Left flanking sequence: Indices 137561 -- 138060
ATGGTGGTGTTGGTGTGTGAGTCAGAGTTTATCCTTATGCATCACGTGAGTGCTACTAAAGTCCG
AAACGGGGAAGAAGTCGGAAGATGGGTAGTGGGAAGAAGGATGAGATCGAAGAGGGGAGTGGCAT
TGGCGTGTTTTGTAGGTGATTCAATTGGAGATGATGTGATGATTGGGTCGTGGCCATGGGTCGTG
GCAAGTGCTAGACATATTGTTTTGTGGAATGACATCCGAGCCTGCCACTTATGACCCCACACTAA
GCAGATTGTGACATTTTGTGTCCAATTGAGTAAAGTGACCAGATCCACAGCCGAGTCACTTAGCT
TTAACTTACTCTTGACGGTTCGCCACTTCCTGCATTACCCCACAAAAGTACGAGATCCACTGACC
AACCACCACTAGCTAAGCCATCACTCACCCGTAAACTCACCCACAAACACACCCATACCTCATTC
CCAATACCCCACCCAAAACTCAACCCATCAACTGACGCCCATCCA
Right flanking sequence: Indices 138100 -- 138599
ACTACTCCAGTTAACTCATAATATCGTTACTATATACAATCTACTTTTGCGAACGCCCGTCAGTC
ACGGTGTTCAACAACAACGTGTCGTTGTCCAACATGATGCGGTTGGGCGACGACGCCAAGATCAG
CGCAATCTCGCGCGCGGTGTCCAACCGCTTGAGCTCCACGTAGTCCTTCAGCTTCTTGATGGCCT
CACCAATAAGCTCGGCCGACTTGGCCTCACCGGCCGCACGCACCACAAGCTGCTGCTTCTCCTGG
ATCGCCTTGTCAACGATAAACGCCGCTCTCTGCGCGTCCTGCTGGGCAATCTGCTTGGCCTCCAC
CGCCTGCGAGAACTCGGGCGAGAAAGTCATCTGGGTCAACGACACATCGTCCAACAAGATGTTGA
ACTTCAGCGCCCGCCGCACCAAGTTGTCCTTGATCAACCGCGACACCTTCTCACGCTGGGTGATG
AGCTGCGACGCGTTGAACTGCGCCACCACCAGCTTCAACACCTCG
Found at i:139213 original size:16 final size:17
Alignment explanation
Indices: 139186--139220 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
139176 AGGGTGGTTA
139186 TGGGGTTGGG-TTGTTG
1 TGGGGTTGGGTTTGTTG
*
139202 TGGGTTTGGGTTTGTTG
1 TGGGGTTGGGTTTGTTG
139219 TG
1 TG
139221 TGGGGTTGAG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 9 0.53
17 8 0.47
ACGTcount: A:0.00, C:0.00, G:0.51, T:0.49
Consensus pattern (17 bp):
TGGGGTTGGGTTTGTTG
Left flanking sequence: Indices 138686 -- 139185
AAGCACCCGGCAGGTGATGTTGACCATCTGCAAGTCCTTGGTGCCCGTCAACAGCGCCACGTTGC
GCGGCTTCGCCCGCACGTCGTAGACAATGGGGCGCTGGAACCAGGGCATGATGATGTGGGTACCC
TCAGGGTAGATCCGGGGCTGCACACCGTTCAACCGCGAGTAGACGATACCCCGCTGACCACCGTC
CACGTTGAAAAGCGCGTTTTCGCCAATCAACATCACACCTCCGAGCAAAAGCACCCCGCCCACGC
CGGCGAACATCCCGAAGGGGTTGCGGAAGTTGCGGGGACCGCCGGTGGTCTTGGTGGCGGCCTTG
CTGCGTGCCTGCTGCGCCCGACGACGGAGTTCTTCGGAGAGGTTCTTCCAATTGGGGTCGGACAT
CGTTGGCTTTGGTTGCGGAGCAGTTAATTTTTCGGGGGTTTGCAGTTTGCCACTTGAGCCGCAGC
GCGAAGGGGTTTGAAGTGGAGGGAAGGAAGGAAGGAGGGTGGTTA
Right flanking sequence: Indices 139221 -- 139720
TGGGGTTGAGTGGCAATGCGTGGTATCTATAGTGTAGTTGGTGTGTTGTTTTACAGCTTAGAGGT
TGGTTTGGCGGTGGTCTGTATGTGAGACGCATACCCGGAATGAGCCCATGAAGTAATGGAATGGG
TGGAAAGAGGGGATTGTAGACGGTGTTTGAGATGAAAGAGGATGGTTGAAAATGATTTGTTACTG
TAATTTTTTCTACTTCTGGTCATTCGGTGTAATATATTGCCTGAGAGCTACTATTCCGAATACAA
CCGGAAAAGATCTGGAAATAGGATAATGGGTTACTGATGGAACAAATAAACACCAACAATTGTGA
CATTTGTGACAAATGTGACAATTGTGACATTTGTGACAAATGTGACAATTGTGACAAATTTGACA
GTTGACTACTGGATTCGTTAAGAGCTTGGTATCAAAATAACACCAGGATTACGGGTCCTTCCTGG
TTAATACCGCGCATCTGACCCATCCAGACTTCCAGAGCACACATT
Found at i:139554 original size:9 final size:9
Alignment explanation
Indices: 139536--139602 Score: 98
Period size: 9 Copynumber: 7.4 Consensus size: 9
139526 ATAAACACCA
139536 ACAATTGTG
1 ACAATTGTG
*
139545 ACATTTGTG
1 ACAATTGTG
*
139554 ACAAATGTG
1 ACAATTGTG
139563 ACAATTGTG
1 ACAATTGTG
*
139572 ACATTTGTG
1 ACAATTGTG
*
139581 ACAAATGTG
1 ACAATTGTG
139590 ACAATTGTG
1 ACAATTGTG
139599 ACAA
1 ACAA
139603 ATTTGACAGT
Statistics
Matches: 50, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
9 50 1.00
ACGTcount: A:0.36, C:0.12, G:0.21, T:0.31
Consensus pattern (9 bp):
ACAATTGTG
Left flanking sequence: Indices 139036 -- 139535
GGAGTTCTTCGGAGAGGTTCTTCCAATTGGGGTCGGACATCGTTGGCTTTGGTTGCGGAGCAGTT
AATTTTTCGGGGGTTTGCAGTTTGCCACTTGAGCCGCAGCGCGAAGGGGTTTGAAGTGGAGGGAA
GGAAGGAAGGAGGGTGGTTATGGGGTTGGGTTGTTGTGGGTTTGGGTTTGTTGTGTGGGGTTGAG
TGGCAATGCGTGGTATCTATAGTGTAGTTGGTGTGTTGTTTTACAGCTTAGAGGTTGGTTTGGCG
GTGGTCTGTATGTGAGACGCATACCCGGAATGAGCCCATGAAGTAATGGAATGGGTGGAAAGAGG
GGATTGTAGACGGTGTTTGAGATGAAAGAGGATGGTTGAAAATGATTTGTTACTGTAATTTTTTC
TACTTCTGGTCATTCGGTGTAATATATTGCCTGAGAGCTACTATTCCGAATACAACCGGAAAAGA
TCTGGAAATAGGATAATGGGTTACTGATGGAACAAATAAACACCA
Right flanking sequence: Indices 139603 -- 140102
ATTTGACAGTTGACTACTGGATTCGTTAAGAGCTTGGTATCAAAATAACACCAGGATTACGGGTC
CTTCCTGGTTAATACCGCGCATCTGACCCATCCAGACTTCCAGAGCACACATTGTAGAACACAAT
CCAACCAACGTACAGCCAGTTCACTATGGCTTGTGATTAGCCTACCCCACCAACCGCATTCCCCG
CCCTCGCCCAAACCACTATCATCAAATTCATTAGTCTATAAATGCTACGAGGGAACCCCCTCAAA
GTTATTGTTCTCGTTGTACTCGTGGATGCGCCGGCGCCAGTACGCCTTGCGGTTGGTCTGGATCG
GGTTGATCCAGAACTTCTCCGCAAGAAAGAGCAAAAGTAGAAACACCGACACCGAAAACGACGGC
GCAATCGACTTGACAAGCTGCGACGGCGTGCTGGTGGTCTTGTACGGACACTGGGCGTACGGACC
GCCAGTAACAAAACAGTCGGCGACCGTGACGTCATTGAAATCGAT
Found at i:139562 original size:18 final size:18
Alignment explanation
Indices: 139536--139610 Score: 96
Period size: 18 Copynumber: 4.2 Consensus size: 18
139526 ATAAACACCA
**
139536 ACAATTGTGACATTTGTG
1 ACAATTGTGACAAATGTG
* *
139554 ACAAATGTGACAATTGTG
1 ACAATTGTGACAAATGTG
*
139572 ACATTTGTGACAAATGTG
1 ACAATTGTGACAAATGTG
*
139590 ACAATTGTGACAAATTTG
1 ACAATTGTGACAAATGTG
139608 ACA
1 ACA
139611 GTTGACTACT
Statistics
Matches: 50, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 50 1.00
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.32
Consensus pattern (18 bp):
ACAATTGTGACAAATGTG
Left flanking sequence: Indices 139036 -- 139535
GGAGTTCTTCGGAGAGGTTCTTCCAATTGGGGTCGGACATCGTTGGCTTTGGTTGCGGAGCAGTT
AATTTTTCGGGGGTTTGCAGTTTGCCACTTGAGCCGCAGCGCGAAGGGGTTTGAAGTGGAGGGAA
GGAAGGAAGGAGGGTGGTTATGGGGTTGGGTTGTTGTGGGTTTGGGTTTGTTGTGTGGGGTTGAG
TGGCAATGCGTGGTATCTATAGTGTAGTTGGTGTGTTGTTTTACAGCTTAGAGGTTGGTTTGGCG
GTGGTCTGTATGTGAGACGCATACCCGGAATGAGCCCATGAAGTAATGGAATGGGTGGAAAGAGG
GGATTGTAGACGGTGTTTGAGATGAAAGAGGATGGTTGAAAATGATTTGTTACTGTAATTTTTTC
TACTTCTGGTCATTCGGTGTAATATATTGCCTGAGAGCTACTATTCCGAATACAACCGGAAAAGA
TCTGGAAATAGGATAATGGGTTACTGATGGAACAAATAAACACCA
Right flanking sequence: Indices 139611 -- 140110
GTTGACTACTGGATTCGTTAAGAGCTTGGTATCAAAATAACACCAGGATTACGGGTCCTTCCTGG
TTAATACCGCGCATCTGACCCATCCAGACTTCCAGAGCACACATTGTAGAACACAATCCAACCAA
CGTACAGCCAGTTCACTATGGCTTGTGATTAGCCTACCCCACCAACCGCATTCCCCGCCCTCGCC
CAAACCACTATCATCAAATTCATTAGTCTATAAATGCTACGAGGGAACCCCCTCAAAGTTATTGT
TCTCGTTGTACTCGTGGATGCGCCGGCGCCAGTACGCCTTGCGGTTGGTCTGGATCGGGTTGATC
CAGAACTTCTCCGCAAGAAAGAGCAAAAGTAGAAACACCGACACCGAAAACGACGGCGCAATCGA
CTTGACAAGCTGCGACGGCGTGCTGGTGGTCTTGTACGGACACTGGGCGTACGGACCGCCAGTAA
CAAAACAGTCGGCGACCGTGACGTCATTGAAATCGATCCACACAG
Found at i:139609 original size:9 final size:10
Alignment explanation
Indices: 139538--139610 Score: 79
Period size: 9 Copynumber: 8.0 Consensus size: 10
139528 AAACACCAAC
139538 AATTGTGAC-
1 AATTGTGACA
*
139547 ATTTGTGACA
1 AATTGTGACA
139557 AA-TGTGAC-
1 AATTGTGACA
139565 AATTGTGAC-
1 AATTGTGACA
*
139574 ATTTGTGACA
1 AATTGTGACA
139584 AA-TGTGAC-
1 AATTGTGACA
139592 AATTGTGACA
1 AATTGTGACA
139602 AATT-TGACA
1 AATTGTGACA
139611 GTTGACTACT
Statistics
Matches: 55, Mismatches: 4, Indels: 10
0.80 0.06 0.14
Matches are distributed among these distances:
8 4 0.07
9 45 0.82
10 6 0.11
ACGTcount: A:0.36, C:0.11, G:0.21, T:0.33
Consensus pattern (10 bp):
AATTGTGACA
Left flanking sequence: Indices 139038 -- 139537
AGTTCTTCGGAGAGGTTCTTCCAATTGGGGTCGGACATCGTTGGCTTTGGTTGCGGAGCAGTTAA
TTTTTCGGGGGTTTGCAGTTTGCCACTTGAGCCGCAGCGCGAAGGGGTTTGAAGTGGAGGGAAGG
AAGGAAGGAGGGTGGTTATGGGGTTGGGTTGTTGTGGGTTTGGGTTTGTTGTGTGGGGTTGAGTG
GCAATGCGTGGTATCTATAGTGTAGTTGGTGTGTTGTTTTACAGCTTAGAGGTTGGTTTGGCGGT
GGTCTGTATGTGAGACGCATACCCGGAATGAGCCCATGAAGTAATGGAATGGGTGGAAAGAGGGG
ATTGTAGACGGTGTTTGAGATGAAAGAGGATGGTTGAAAATGATTTGTTACTGTAATTTTTTCTA
CTTCTGGTCATTCGGTGTAATATATTGCCTGAGAGCTACTATTCCGAATACAACCGGAAAAGATC
TGGAAATAGGATAATGGGTTACTGATGGAACAAATAAACACCAAC
Right flanking sequence: Indices 139611 -- 140110
GTTGACTACTGGATTCGTTAAGAGCTTGGTATCAAAATAACACCAGGATTACGGGTCCTTCCTGG
TTAATACCGCGCATCTGACCCATCCAGACTTCCAGAGCACACATTGTAGAACACAATCCAACCAA
CGTACAGCCAGTTCACTATGGCTTGTGATTAGCCTACCCCACCAACCGCATTCCCCGCCCTCGCC
CAAACCACTATCATCAAATTCATTAGTCTATAAATGCTACGAGGGAACCCCCTCAAAGTTATTGT
TCTCGTTGTACTCGTGGATGCGCCGGCGCCAGTACGCCTTGCGGTTGGTCTGGATCGGGTTGATC
CAGAACTTCTCCGCAAGAAAGAGCAAAAGTAGAAACACCGACACCGAAAACGACGGCGCAATCGA
CTTGACAAGCTGCGACGGCGTGCTGGTGGTCTTGTACGGACACTGGGCGTACGGACCGCCAGTAA
CAAAACAGTCGGCGACCGTGACGTCATTGAAATCGATCCACACAG
Found at i:139610 original size:27 final size:27
Alignment explanation
Indices: 139536--139601 Score: 132
Period size: 27 Copynumber: 2.4 Consensus size: 27
139526 ATAAACACCA
139536 ACAATTGTGACATTTGTGACAAATGTG
1 ACAATTGTGACATTTGTGACAAATGTG
139563 ACAATTGTGACATTTGTGACAAATGTG
1 ACAATTGTGACATTTGTGACAAATGTG
139590 ACAATTGTGACA
1 ACAATTGTGACA
139602 AATTTGACAG
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 39 1.00
ACGTcount: A:0.35, C:0.12, G:0.21, T:0.32
Consensus pattern (27 bp):
ACAATTGTGACATTTGTGACAAATGTG
Left flanking sequence: Indices 139036 -- 139535
GGAGTTCTTCGGAGAGGTTCTTCCAATTGGGGTCGGACATCGTTGGCTTTGGTTGCGGAGCAGTT
AATTTTTCGGGGGTTTGCAGTTTGCCACTTGAGCCGCAGCGCGAAGGGGTTTGAAGTGGAGGGAA
GGAAGGAAGGAGGGTGGTTATGGGGTTGGGTTGTTGTGGGTTTGGGTTTGTTGTGTGGGGTTGAG
TGGCAATGCGTGGTATCTATAGTGTAGTTGGTGTGTTGTTTTACAGCTTAGAGGTTGGTTTGGCG
GTGGTCTGTATGTGAGACGCATACCCGGAATGAGCCCATGAAGTAATGGAATGGGTGGAAAGAGG
GGATTGTAGACGGTGTTTGAGATGAAAGAGGATGGTTGAAAATGATTTGTTACTGTAATTTTTTC
TACTTCTGGTCATTCGGTGTAATATATTGCCTGAGAGCTACTATTCCGAATACAACCGGAAAAGA
TCTGGAAATAGGATAATGGGTTACTGATGGAACAAATAAACACCA
Right flanking sequence: Indices 139602 -- 140101
AATTTGACAGTTGACTACTGGATTCGTTAAGAGCTTGGTATCAAAATAACACCAGGATTACGGGT
CCTTCCTGGTTAATACCGCGCATCTGACCCATCCAGACTTCCAGAGCACACATTGTAGAACACAA
TCCAACCAACGTACAGCCAGTTCACTATGGCTTGTGATTAGCCTACCCCACCAACCGCATTCCCC
GCCCTCGCCCAAACCACTATCATCAAATTCATTAGTCTATAAATGCTACGAGGGAACCCCCTCAA
AGTTATTGTTCTCGTTGTACTCGTGGATGCGCCGGCGCCAGTACGCCTTGCGGTTGGTCTGGATC
GGGTTGATCCAGAACTTCTCCGCAAGAAAGAGCAAAAGTAGAAACACCGACACCGAAAACGACGG
CGCAATCGACTTGACAAGCTGCGACGGCGTGCTGGTGGTCTTGTACGGACACTGGGCGTACGGAC
CGCCAGTAACAAAACAGTCGGCGACCGTGACGTCATTGAAATCGA
Found at i:142283 original size:10 final size:10
Alignment explanation
Indices: 142268--142294 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
142258 TGAAACGATC
142268 GATGGTGAAA
1 GATGGTGAAA
142278 GATGGTGAAA
1 GATGGTGAAA
142288 GATGGTG
1 GATGGTG
142295 TGAAGAGGCA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.33, C:0.00, G:0.44, T:0.22
Consensus pattern (10 bp):
GATGGTGAAA
Left flanking sequence: Indices 141768 -- 142267
AGAGGATATCAAAGAGAGAGGGAGAACGGAGATCTACGAAGAAGAACCCGAAAAACGACTCTCCA
AGCAGAGTTTCATCCCTGAGGCGTCTGCATCGTTGTCTGTTGGTGCTGTCCGTACCACGCTACTG
TCTGGTGGCTGGCGTCGGAATTTCACCTCGCAGGTATCGGTTGACGTAGCCGAGCCGGCCAGGCA
CGGAACAATGGGCCAGGAACCGCTTGCAACGTCCCTAATCAGGGGGGCTAATCAGTTGTGATTCT
CGCTATGCTTAATATGGCCAGGTTCATCCCTAAGCCTGACTGCCACCGGACTGCTACCAGACTGC
CACCGAGTGCCACTGCTTGGCTACGGGCTGGGCCACCGACACCTACGGTTCCGGGCCTTCCCCAG
ACAACGCAGCACGCGGCAGCCCTGGGATACGCGCCCCAGTTTCGGGTTGGTGCCTGATCCAGCCT
CAACGCACTGTCACCTGGGCATGTGCATCTATCGATGAAACGATC
Right flanking sequence: Indices 142295 -- 142794
TGAAGAGGCAGGTAAGCAAAGCCCTGTGTAACTGATAGCTGAAACACCTGAAACCACCAATCTAA
CACACCGACTCAGCCCACCCTACACAGTCGTACTCACACAAGTGCCCTCCAAACCACACTCCACA
CAACACCCCACACACTCAACACTACTTCATGCATTCTCTATGTACGGTTACTTCGTGATCTCAAA
GCTCCAGGGGAACTGCAAATGAACCGTTTTGTCGTCGTCAATGAACTTGGTGGTGGCAGAGTAGT
TGCCACGCGCCAAAAACCCCAGCGGAGCCTCCACCTCGTGGAACTTGCGCTCGTACCACGGCTTG
TCGCTGGTGTTGGGCGCATACAGCCCGAGGGGCTCCTCGACCTTGTCCACGGGAATCAGCTTCTT
TTTGACCGAGTGCAAGTACTTGAGCCCGGTGATGATCTCGTGCTGCACCCGGAACTTGACGTACA
ACTGGTACACCAGCTTCTCCTTGATGGTGAACTTGATGTCCTTGT
Found at i:143321 original size:19 final size:19
Alignment explanation
Indices: 143268--143323 Score: 80
Period size: 19 Copynumber: 3.0 Consensus size: 19
143258 GGTGTGTGTT
143268 TATGGGTAGTGGCG-GGTGG
1 TATGGGTAGTGG-GTGGTGG
*
143287 TATGGGAAGT-GGTGGTGG
1 TATGGGTAGTGGGTGGTGG
143305 TATGGGTAGTGGGTGGTGG
1 TATGGGTAGTGGGTGGTGG
143324 CGAGTGATGC
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
17 1 0.03
18 15 0.45
19 17 0.52
ACGTcount: A:0.12, C:0.02, G:0.57, T:0.29
Consensus pattern (19 bp):
TATGGGTAGTGGGTGGTGG
Left flanking sequence: Indices 142768 -- 143267
CCTTGATGGTGAACTTGATGTCCTTGTTGATGGTGTTGCCGTCCGCGTCCTCCAAGTTGATGCGG
ATGGGGGCAATGGGCTGGTCGGGGAACTCGAGCCCCATCTCCACAATCACCACCGTGCGCTTGTC
GCCCGCCTTGACGGGGTACGCCTGCGCGTTCTCGGTGATCCCCAACGACGCCTTCCACTTGGCAA
GCGACTCGTCCTCGGCATCCAACTTGGCGTACTCGGCAATCGTCTTCTTCTCGCCCACGTTGTAG
CCTTGCACGGTCTCGGGAACCAAATCGTCGTCAACACCAGACATGTTGTGAGTTACGTGGGAAAA
AAATGCGGGCCTCTGGCTATATGGTTGATTTTGTCGCGCGTATATTAGGCGCGTCAAACATTCCT
GGTTGAGGCGCGGATCAGCGTCGCGAGGTGGCCCAACGGTAGTCAAGGGAGACAGGAGAGACACC
GGGAAGCGCACACCCGGTCAGGTTACCGGGGTGGTGGTGTGTGTT
Right flanking sequence: Indices 143324 -- 143823
CGAGTGATGCGGATGGTGGCGAGTGGCTCGGTTGGGTGGATGTTGGGTTCGCTGATACGCTGTCT
ACGTTGACGTATGTTCTCTCTTTTGGTGTTTATCTACTTCTTTAACTGTTCTTCTGCTCCTGTTC
TTCTGTTATTGTTCTTCTGTTCTTGTTCGTCTGTTCTGTTCTTCTCTTCTCTTCTTCTGTTGCAC
TTTGGTCCTTCTTCTCCTTCCTCTACGTCTCGTCTCCTTCCTCGTATTATCCCTGTGATCAGATC
TCCTCGAAAATTGCTTTTGCCGGGGACTCCTTCCGGTTCGGGTAAATTCCGTGGCCCCAGTTGAC
AGCAACACCCACCGTAGAATCAGTTCACCCGTGCATTCGTCACTCTCCGCACCGCGAGCGAAAAC
CATGTGGTGGGCGTGGCTCGTGGTGCTCTGGGCCCTCGCGGTCTACGACGACGGCGACCCTGTAG
ACGACACCCCCCTAGCCCGCCAGCCACGGGGACTGGAACGACCGC
Found at i:143451 original size:14 final size:14
Alignment explanation
Indices: 143434--143512 Score: 63
Period size: 14 Copynumber: 5.8 Consensus size: 14
143424 ACTTCTTTAA
143434 CTGTTCTTCTGCTC
1 CTGTTCTTCTGCTC
* *
143448 CTGTTCTTCTGTTA
1 CTGTTCTTCTGCTC
* *
143462 TTGTTCTTCTGTTC
1 CTGTTCTTCTGCTC
* * *
143476 TTGTTCGTCTG-TT
1 CTGTTCTTCTGCTC
*
143489 CTGTTCTTCT-CTT
1 CTGTTCTTCTGCTC
*
143502 CTCTTCTTCTG
1 CTGTTCTTCTG
143513 TTGCACTTTG
Statistics
Matches: 54, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
13 20 0.37
14 34 0.63
ACGTcount: A:0.01, C:0.27, G:0.14, T:0.58
Consensus pattern (14 bp):
CTGTTCTTCTGCTC
Left flanking sequence: Indices 142934 -- 143433
GATCCCCAACGACGCCTTCCACTTGGCAAGCGACTCGTCCTCGGCATCCAACTTGGCGTACTCGG
CAATCGTCTTCTTCTCGCCCACGTTGTAGCCTTGCACGGTCTCGGGAACCAAATCGTCGTCAACA
CCAGACATGTTGTGAGTTACGTGGGAAAAAAATGCGGGCCTCTGGCTATATGGTTGATTTTGTCG
CGCGTATATTAGGCGCGTCAAACATTCCTGGTTGAGGCGCGGATCAGCGTCGCGAGGTGGCCCAA
CGGTAGTCAAGGGAGACAGGAGAGACACCGGGAAGCGCACACCCGGTCAGGTTACCGGGGTGGTG
GTGTGTGTTTATGGGTAGTGGCGGGTGGTATGGGAAGTGGTGGTGGTATGGGTAGTGGGTGGTGG
CGAGTGATGCGGATGGTGGCGAGTGGCTCGGTTGGGTGGATGTTGGGTTCGCTGATACGCTGTCT
ACGTTGACGTATGTTCTCTCTTTTGGTGTTTATCTACTTCTTTAA
Right flanking sequence: Indices 143513 -- 144012
TTGCACTTTGGTCCTTCTTCTCCTTCCTCTACGTCTCGTCTCCTTCCTCGTATTATCCCTGTGAT
CAGATCTCCTCGAAAATTGCTTTTGCCGGGGACTCCTTCCGGTTCGGGTAAATTCCGTGGCCCCA
GTTGACAGCAACACCCACCGTAGAATCAGTTCACCCGTGCATTCGTCACTCTCCGCACCGCGAGC
GAAAACCATGTGGTGGGCGTGGCTCGTGGTGCTCTGGGCCCTCGCGGTCTACGACGACGGCGACC
CTGTAGACGACACCCCCCTAGCCCGCCAGCCACGGGGACTGGAACGACCGCTTCTCCCACATCAC
TTTGGGTGGCCCCACTCGGCGTGCGGAAACAAGTACTTCCACGAGGTGGGGGGCCACTTTGACGC
CCGGTTCTTCCGCGCGCGGCCCCGCTACTACGCGAACCAGGCCACGTTGTGGCGGCTCGCGCGGG
CGTGGCTCGGTTTTGCCCACACCCACCAGCTCGACACCTGGTTGG
Found at i:143460 original size:22 final size:22
Alignment explanation
Indices: 143434--143514 Score: 71
Period size: 22 Copynumber: 3.9 Consensus size: 22
143424 ACTTCTTTAA
*
143434 CTGTTCTTCTGCTCCTGTTCTT
1 CTGTTCTTCTGCTTCTGTTCTT
* * *
143456 CTGTTATTGTTCTTCTGTTC-T
1 CTGTTCTTCTGCTTCTGTTCTT
*
143477 -TGTTCGTCTG-TTCTGTTCTT
1 CTGTTCTTCTGCTTCTGTTCTT
* *
143497 CTCTTC-TCTTCTTCTGTT
1 CTGTTCTTCTGCTTCTGTT
143515 GCACTTTGGT
Statistics
Matches: 46, Mismatches: 10, Indels: 7
0.73 0.16 0.11
Matches are distributed among these distances:
19 8 0.17
20 10 0.22
21 12 0.26
22 16 0.35
ACGTcount: A:0.01, C:0.26, G:0.14, T:0.59
Consensus pattern (22 bp):
CTGTTCTTCTGCTTCTGTTCTT
Left flanking sequence: Indices 142934 -- 143433
GATCCCCAACGACGCCTTCCACTTGGCAAGCGACTCGTCCTCGGCATCCAACTTGGCGTACTCGG
CAATCGTCTTCTTCTCGCCCACGTTGTAGCCTTGCACGGTCTCGGGAACCAAATCGTCGTCAACA
CCAGACATGTTGTGAGTTACGTGGGAAAAAAATGCGGGCCTCTGGCTATATGGTTGATTTTGTCG
CGCGTATATTAGGCGCGTCAAACATTCCTGGTTGAGGCGCGGATCAGCGTCGCGAGGTGGCCCAA
CGGTAGTCAAGGGAGACAGGAGAGACACCGGGAAGCGCACACCCGGTCAGGTTACCGGGGTGGTG
GTGTGTGTTTATGGGTAGTGGCGGGTGGTATGGGAAGTGGTGGTGGTATGGGTAGTGGGTGGTGG
CGAGTGATGCGGATGGTGGCGAGTGGCTCGGTTGGGTGGATGTTGGGTTCGCTGATACGCTGTCT
ACGTTGACGTATGTTCTCTCTTTTGGTGTTTATCTACTTCTTTAA
Right flanking sequence: Indices 143515 -- 144014
GCACTTTGGTCCTTCTTCTCCTTCCTCTACGTCTCGTCTCCTTCCTCGTATTATCCCTGTGATCA
GATCTCCTCGAAAATTGCTTTTGCCGGGGACTCCTTCCGGTTCGGGTAAATTCCGTGGCCCCAGT
TGACAGCAACACCCACCGTAGAATCAGTTCACCCGTGCATTCGTCACTCTCCGCACCGCGAGCGA
AAACCATGTGGTGGGCGTGGCTCGTGGTGCTCTGGGCCCTCGCGGTCTACGACGACGGCGACCCT
GTAGACGACACCCCCCTAGCCCGCCAGCCACGGGGACTGGAACGACCGCTTCTCCCACATCACTT
TGGGTGGCCCCACTCGGCGTGCGGAAACAAGTACTTCCACGAGGTGGGGGGCCACTTTGACGCCC
GGTTCTTCCGCGCGCGGCCCCGCTACTACGCGAACCAGGCCACGTTGTGGCGGCTCGCGCGGGCG
TGGCTCGGTTTTGCCCACACCCACCAGCTCGACACCTGGTTGGCC
Found at i:143474 original size:8 final size:8
Alignment explanation
Indices: 143434--143514 Score: 50
Period size: 8 Copynumber: 10.6 Consensus size: 8
143424 ACTTCTTTAA
143434 CTGTTCTT
1 CTGTTCTT
*
143442 CTG--CTC
1 CTGTTCTT
143448 CTGTTCTT
1 CTGTTCTT
*
143456 CTGTT-AT
1 CTGTTCTT
143463 -TGTTCTT
1 CTGTTCTT
143470 CTGTTC-T
1 CTGTTCTT
*
143477 -TGTTCGT
1 CTGTTCTT
143484 CTGTTCTGTT
1 CTGTTC--TT
143494 CT-TCTCTT
1 CTGT-TCTT
*
143502 CTCTTCTT
1 CTGTTCTT
143510 CTGTT
1 CTGTT
143515 GCACTTTGGT
Statistics
Matches: 57, Mismatches: 6, Indels: 20
0.69 0.07 0.24
Matches are distributed among these distances:
6 14 0.25
7 4 0.07
8 32 0.56
9 2 0.04
10 5 0.09
ACGTcount: A:0.01, C:0.26, G:0.14, T:0.59
Consensus pattern (8 bp):
CTGTTCTT
Left flanking sequence: Indices 142934 -- 143433
GATCCCCAACGACGCCTTCCACTTGGCAAGCGACTCGTCCTCGGCATCCAACTTGGCGTACTCGG
CAATCGTCTTCTTCTCGCCCACGTTGTAGCCTTGCACGGTCTCGGGAACCAAATCGTCGTCAACA
CCAGACATGTTGTGAGTTACGTGGGAAAAAAATGCGGGCCTCTGGCTATATGGTTGATTTTGTCG
CGCGTATATTAGGCGCGTCAAACATTCCTGGTTGAGGCGCGGATCAGCGTCGCGAGGTGGCCCAA
CGGTAGTCAAGGGAGACAGGAGAGACACCGGGAAGCGCACACCCGGTCAGGTTACCGGGGTGGTG
GTGTGTGTTTATGGGTAGTGGCGGGTGGTATGGGAAGTGGTGGTGGTATGGGTAGTGGGTGGTGG
CGAGTGATGCGGATGGTGGCGAGTGGCTCGGTTGGGTGGATGTTGGGTTCGCTGATACGCTGTCT
ACGTTGACGTATGTTCTCTCTTTTGGTGTTTATCTACTTCTTTAA
Right flanking sequence: Indices 143515 -- 144014
GCACTTTGGTCCTTCTTCTCCTTCCTCTACGTCTCGTCTCCTTCCTCGTATTATCCCTGTGATCA
GATCTCCTCGAAAATTGCTTTTGCCGGGGACTCCTTCCGGTTCGGGTAAATTCCGTGGCCCCAGT
TGACAGCAACACCCACCGTAGAATCAGTTCACCCGTGCATTCGTCACTCTCCGCACCGCGAGCGA
AAACCATGTGGTGGGCGTGGCTCGTGGTGCTCTGGGCCCTCGCGGTCTACGACGACGGCGACCCT
GTAGACGACACCCCCCTAGCCCGCCAGCCACGGGGACTGGAACGACCGCTTCTCCCACATCACTT
TGGGTGGCCCCACTCGGCGTGCGGAAACAAGTACTTCCACGAGGTGGGGGGCCACTTTGACGCCC
GGTTCTTCCGCGCGCGGCCCCGCTACTACGCGAACCAGGCCACGTTGTGGCGGCTCGCGCGGGCG
TGGCTCGGTTTTGCCCACACCCACCAGCTCGACACCTGGTTGGCC
Found at i:145283 original size:13 final size:12
Alignment explanation
Indices: 145265--145314 Score: 57
Period size: 13 Copynumber: 4.0 Consensus size: 12
145255 CGTAATAACA
145265 CCACCTCTATCCC
1 CCACCTCTA-CCC
145278 CCACCTCTA-CC
1 CCACCTCTACCC
*
145289 CCACCACTACCCC
1 CCACCTCTA-CCC
145302 ACCACCTCTACCC
1 -CCACCTCTACCC
145315 TATCTCCCCA
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
11 10 0.31
13 14 0.44
14 8 0.25
ACGTcount: A:0.20, C:0.64, G:0.00, T:0.16
Consensus pattern (12 bp):
CCACCTCTACCC
Left flanking sequence: Indices 144765 -- 145264
CTATCACCGCCCTTGGTATGACGAGGTATCCGTTGCGTTAACCCTGACCAGGCACTATCAACAAT
ACCTTCAAGATTGGTTAATAATCTTACAAAACACATACTAAGTGGTGGTCATTTATGTCTTCCTT
GTCCATTACCAGGCGCTTTCATCAGTGGGTAATGGTATTAGCTCAGCTTTCCTATCAGTGTAACC
ACCCGTGAATACCACAACTTCATAGTTCTAGCTAGAACCATACCTAATACCATAATCAGTACACC
AATACACTGAGCCCGATCTTTCCTCTTGAACCACTACCCCACTGCGTCATCTCACCTCTTCGCCA
TCCTAGCCAGTGTACGACCTCCCATCTCTACTATAGTCCTACCCATCTCCACCCACCTTCTCCAC
TACCACTTACCCGATCCAATCCCACCTATGACGTCAACGTCACAACACCACACCATCACCACCCA
TACCACCACCAATACCCCACTACCAAACCACTCCCCGTAATAACA
Right flanking sequence: Indices 145315 -- 145814
TATCTCCCCACTTCCTTCCACTTCCTTCTCTTTCCCACACTTCTTCCCCACCGCGCGCACGAAAC
CGATCAAGCCATATCCATCGTCGAGGCACCCACACCACACACCCGCCCTCACGAGCCATGAGCAA
CCCCGACGAAGTAAGTGTGTCCCCTGCCAACCCATTGGTCCCCCTTGTTCTCCACTAACCCCAGA
TCCGCGCCAAGCGTTTGGCCCGACTCGGTGGCAACGGCCTGAGGCTGCCAGCGCTGCTGCTGGCG
TCTGTGAACAGCAGCGACGGCAAACAGAAGCCTGCGAGCCCGGCCCCTGTGCCCGCCAGCCCGGC
TGTGGCCGCCAACCCGCCGTCCGCGGCGCCCACGGCCCAGCTGGCATCGCTGAACCAGACCCAGC
CTCCCGTCCAACTGGCCCACCAGGCCCCACCGGAGGCCCACCAGGCCCAGCCCGCCGCCACCAAA
CCCGCTCCAGCCAAGCCCAGACCGCTGCTCTCGCTCTCCGAGTGG
Found at i:145292 original size:11 final size:11
Alignment explanation
Indices: 145265--145304 Score: 53
Period size: 11 Copynumber: 3.5 Consensus size: 11
145255 CGTAATAACA
145265 CCACCTCTATCCC
1 CCACCTCTA--CC
145278 CCACCTCTACC
1 CCACCTCTACC
*
145289 CCACCACTACC
1 CCACCTCTACC
145300 CCACC
1 CCACC
145305 ACCTCTACCC
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
11 17 0.65
13 9 0.35
ACGTcount: A:0.20, C:0.65, G:0.00, T:0.15
Consensus pattern (11 bp):
CCACCTCTACC
Left flanking sequence: Indices 144765 -- 145264
CTATCACCGCCCTTGGTATGACGAGGTATCCGTTGCGTTAACCCTGACCAGGCACTATCAACAAT
ACCTTCAAGATTGGTTAATAATCTTACAAAACACATACTAAGTGGTGGTCATTTATGTCTTCCTT
GTCCATTACCAGGCGCTTTCATCAGTGGGTAATGGTATTAGCTCAGCTTTCCTATCAGTGTAACC
ACCCGTGAATACCACAACTTCATAGTTCTAGCTAGAACCATACCTAATACCATAATCAGTACACC
AATACACTGAGCCCGATCTTTCCTCTTGAACCACTACCCCACTGCGTCATCTCACCTCTTCGCCA
TCCTAGCCAGTGTACGACCTCCCATCTCTACTATAGTCCTACCCATCTCCACCCACCTTCTCCAC
TACCACTTACCCGATCCAATCCCACCTATGACGTCAACGTCACAACACCACACCATCACCACCCA
TACCACCACCAATACCCCACTACCAAACCACTCCCCGTAATAACA
Right flanking sequence: Indices 145305 -- 145804
ACCTCTACCCTATCTCCCCACTTCCTTCCACTTCCTTCTCTTTCCCACACTTCTTCCCCACCGCG
CGCACGAAACCGATCAAGCCATATCCATCGTCGAGGCACCCACACCACACACCCGCCCTCACGAG
CCATGAGCAACCCCGACGAAGTAAGTGTGTCCCCTGCCAACCCATTGGTCCCCCTTGTTCTCCAC
TAACCCCAGATCCGCGCCAAGCGTTTGGCCCGACTCGGTGGCAACGGCCTGAGGCTGCCAGCGCT
GCTGCTGGCGTCTGTGAACAGCAGCGACGGCAAACAGAAGCCTGCGAGCCCGGCCCCTGTGCCCG
CCAGCCCGGCTGTGGCCGCCAACCCGCCGTCCGCGGCGCCCACGGCCCAGCTGGCATCGCTGAAC
CAGACCCAGCCTCCCGTCCAACTGGCCCACCAGGCCCCACCGGAGGCCCACCAGGCCCAGCCCGC
CGCCACCAAACCCGCTCCAGCCAAGCCCAGACCGCTGCTCTCGCT
Found at i:145309 original size:25 final size:24
Alignment explanation
Indices: 145265--145314 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 24
145255 CGTAATAACA
* *
145265 CCACCTCTATCCCCCACCTCTACC
1 CCACCACTACCCCCCACCTCTACC
145289 CCACCACTACCCCACCACCTCTACC
1 CCACCACTACCCC-CCACCTCTACC
145314 C
1 C
145315 TATCTCCCCA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 11 0.48
25 12 0.52
ACGTcount: A:0.20, C:0.64, G:0.00, T:0.16
Consensus pattern (24 bp):
CCACCACTACCCCCCACCTCTACC
Left flanking sequence: Indices 144765 -- 145264
CTATCACCGCCCTTGGTATGACGAGGTATCCGTTGCGTTAACCCTGACCAGGCACTATCAACAAT
ACCTTCAAGATTGGTTAATAATCTTACAAAACACATACTAAGTGGTGGTCATTTATGTCTTCCTT
GTCCATTACCAGGCGCTTTCATCAGTGGGTAATGGTATTAGCTCAGCTTTCCTATCAGTGTAACC
ACCCGTGAATACCACAACTTCATAGTTCTAGCTAGAACCATACCTAATACCATAATCAGTACACC
AATACACTGAGCCCGATCTTTCCTCTTGAACCACTACCCCACTGCGTCATCTCACCTCTTCGCCA
TCCTAGCCAGTGTACGACCTCCCATCTCTACTATAGTCCTACCCATCTCCACCCACCTTCTCCAC
TACCACTTACCCGATCCAATCCCACCTATGACGTCAACGTCACAACACCACACCATCACCACCCA
TACCACCACCAATACCCCACTACCAAACCACTCCCCGTAATAACA
Right flanking sequence: Indices 145315 -- 145814
TATCTCCCCACTTCCTTCCACTTCCTTCTCTTTCCCACACTTCTTCCCCACCGCGCGCACGAAAC
CGATCAAGCCATATCCATCGTCGAGGCACCCACACCACACACCCGCCCTCACGAGCCATGAGCAA
CCCCGACGAAGTAAGTGTGTCCCCTGCCAACCCATTGGTCCCCCTTGTTCTCCACTAACCCCAGA
TCCGCGCCAAGCGTTTGGCCCGACTCGGTGGCAACGGCCTGAGGCTGCCAGCGCTGCTGCTGGCG
TCTGTGAACAGCAGCGACGGCAAACAGAAGCCTGCGAGCCCGGCCCCTGTGCCCGCCAGCCCGGC
TGTGGCCGCCAACCCGCCGTCCGCGGCGCCCACGGCCCAGCTGGCATCGCTGAACCAGACCCAGC
CTCCCGTCCAACTGGCCCACCAGGCCCCACCGGAGGCCCACCAGGCCCAGCCCGCCGCCACCAAA
CCCGCTCCAGCCAAGCCCAGACCGCTGCTCTCGCTCTCCGAGTGG
Found at i:145648 original size:18 final size:18
Alignment explanation
Indices: 145621--145655 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
145611 AGCCCGGCCC
*
145621 CTGTGCCCGCCAGCCCGG
1 CTGTGCCCGCCAACCCGG
*
145639 CTGTGGCCGCCAACCCG
1 CTGTGCCCGCCAACCCG
145656 CCGTCCGCGG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.09, C:0.49, G:0.31, T:0.11
Consensus pattern (18 bp):
CTGTGCCCGCCAACCCGG
Left flanking sequence: Indices 145121 -- 145620
TATAGTCCTACCCATCTCCACCCACCTTCTCCACTACCACTTACCCGATCCAATCCCACCTATGA
CGTCAACGTCACAACACCACACCATCACCACCCATACCACCACCAATACCCCACTACCAAACCAC
TCCCCGTAATAACACCACCTCTATCCCCCACCTCTACCCCACCACTACCCCACCACCTCTACCCT
ATCTCCCCACTTCCTTCCACTTCCTTCTCTTTCCCACACTTCTTCCCCACCGCGCGCACGAAACC
GATCAAGCCATATCCATCGTCGAGGCACCCACACCACACACCCGCCCTCACGAGCCATGAGCAAC
CCCGACGAAGTAAGTGTGTCCCCTGCCAACCCATTGGTCCCCCTTGTTCTCCACTAACCCCAGAT
CCGCGCCAAGCGTTTGGCCCGACTCGGTGGCAACGGCCTGAGGCTGCCAGCGCTGCTGCTGGCGT
CTGTGAACAGCAGCGACGGCAAACAGAAGCCTGCGAGCCCGGCCC
Right flanking sequence: Indices 145656 -- 146155
CCGTCCGCGGCGCCCACGGCCCAGCTGGCATCGCTGAACCAGACCCAGCCTCCCGTCCAACTGGC
CCACCAGGCCCCACCGGAGGCCCACCAGGCCCAGCCCGCCGCCACCAAACCCGCTCCAGCCAAGC
CCAGACCGCTGCTCTCGCTCTCCGAGTGGTTCGTGCTGGAGATTCCCGAGCTTTTCGGAGCGTCG
GTCGACCCGACCCTGGGCCTCCTCCCGCTCGAGCTGGTGGCCGCAGACGACGCCCCCGAGACCCA
CCTCGACGAGATCTTCATGGAAATCCTCACGGCCGTCGGCGTGCCCACTGCGTCGCCGCTCGAGT
ACTTGTTTGCCGTCCACCAGCGGGCGTTCCGGCTCAAACGCCGGATGCCCGTGGCTCTGACCGCC
CACCACGACGCCAAGGTGGCGGTGCTCAACCAGGTGGGCCGCCTCGCGTGCAACTACGCGCTCAT
TGCCCTCCAGGAGCCCGACATGTTCGTCAAGGGCAACGCCAACGC
Found at i:151937 original size:36 final size:36
Alignment explanation
Indices: 151870--151941 Score: 92
Period size: 36 Copynumber: 2.0 Consensus size: 36
151860 ATCTGACTGA
* *
151870 TGCTTGCAACAGAACTCTTAAACCGGAATTGATTCT
1 TGCTTGCAACACAACTCTAAAACCGGAATTGATTCT
**
151906 TGCTTGCAACACAACTCTCAAAATTGG-ATTGATTCT
1 TGCTTGCAACACAACTCT-AAAACCGGAATTGATTCT
151942 ACAGATCGTA
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
36 26 0.84
37 5 0.16
ACGTcount: A:0.31, C:0.22, G:0.15, T:0.32
Consensus pattern (36 bp):
TGCTTGCAACACAACTCTAAAACCGGAATTGATTCT
Left flanking sequence: Indices 151370 -- 151869
GAGACGCGTATCCCGTGGCGGCGGGGGATTGTTCTGGGGGATCAATGGCGGTGGTGGTGTAGCGT
AGGGTGTTCTTCGGGCGTTAACTCCGGCGGGCGTGGTTGCGAAATGTGTCATCCGCATCGGGCGA
GGGAGAACAGCCCAGAGATGAAGCTCGCCACGGAGTTAGTGCGAGTGGAGACGAGAATGTGAGGC
GGGCTAAGCCAGGGCCTTTTTTTAGAAACCAGTGTAGTGGGGTGTGATGAGGTGCTGATGGAGGC
TCATTGGTTTGGGGTGTGGTGTGTGGTAGACGGTGGTGTGTGTACGGTGGGTGGACTCGCTGCAC
CCAGCAGACACCGACAGCCGCCTTATGGCTGATGCCTGCTGCAGGTTGCACCCATTATCTTCACG
ATCACTTCACCGAGACAATCAGACCATAATGGGAATTGCGATGAGCCTGGATTGTAATGGGATGG
TCGTAAGGGTGAGGGTGTAATCCAGACAATTGTCCATCTGACTGA
Right flanking sequence: Indices 151942 -- 152441
ACAGATCGTATACACTATTCGCAAAAGGTTATAGTTCTGCGTACTACAATTAAACACGCCGTAAA
ACAACTACTTTAGAAGACCTATTTTAGAAAACTTACTTTAAAAAACTTACCTACATTAGGAAACA
GATCCACAACCATTGAATCGATCACAGCCATTCCCACTAGCCAACAATGCAAGAAGCTTATGGTT
ATATCCAGGTTACGGTGATAATCCAGCTTACGATATACAACTCTGATTACGTACACTCAGGCACA
GTATCAAGTAAAGTGTAATTAACCACACTGTAATTAAACCACTCTGTGTCTAGCCATCCATGTTC
CCTAGTGTAATCACTGATAATCAGCAAACCACACCGAAACACCATAATCTCCTGGACACCAACTC
AACACCCCCCCCCACCCACTACATCCTTAACACATGAATATGCTATATGCTACTTGCCTACGTTC
ACCTTGCACGAGGCAAACTTGCGGAGCGCCCGCAAAAACACCGCG
Found at i:152046 original size:14 final size:14
Alignment explanation
Indices: 152012--152056 Score: 54
Period size: 14 Copynumber: 3.2 Consensus size: 14
152002 GTAAAACAAC
* *
152012 TACTTTAGAAGACC
1 TACTTTAGAAAACT
*
152026 TATTTTAGAAAACT
1 TACTTTAGAAAACT
*
152040 TACTTTAAAAAACT
1 TACTTTAGAAAACT
152054 TAC
1 TAC
152057 CTACATTAGG
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
14 26 1.00
ACGTcount: A:0.42, C:0.16, G:0.07, T:0.36
Consensus pattern (14 bp):
TACTTTAGAAAACT
Left flanking sequence: Indices 151512 -- 152011
CAGAGATGAAGCTCGCCACGGAGTTAGTGCGAGTGGAGACGAGAATGTGAGGCGGGCTAAGCCAG
GGCCTTTTTTTAGAAACCAGTGTAGTGGGGTGTGATGAGGTGCTGATGGAGGCTCATTGGTTTGG
GGTGTGGTGTGTGGTAGACGGTGGTGTGTGTACGGTGGGTGGACTCGCTGCACCCAGCAGACACC
GACAGCCGCCTTATGGCTGATGCCTGCTGCAGGTTGCACCCATTATCTTCACGATCACTTCACCG
AGACAATCAGACCATAATGGGAATTGCGATGAGCCTGGATTGTAATGGGATGGTCGTAAGGGTGA
GGGTGTAATCCAGACAATTGTCCATCTGACTGATGCTTGCAACAGAACTCTTAAACCGGAATTGA
TTCTTGCTTGCAACACAACTCTCAAAATTGGATTGATTCTACAGATCGTATACACTATTCGCAAA
AGGTTATAGTTCTGCGTACTACAATTAAACACGCCGTAAAACAAC
Right flanking sequence: Indices 152057 -- 152556
CTACATTAGGAAACAGATCCACAACCATTGAATCGATCACAGCCATTCCCACTAGCCAACAATGC
AAGAAGCTTATGGTTATATCCAGGTTACGGTGATAATCCAGCTTACGATATACAACTCTGATTAC
GTACACTCAGGCACAGTATCAAGTAAAGTGTAATTAACCACACTGTAATTAAACCACTCTGTGTC
TAGCCATCCATGTTCCCTAGTGTAATCACTGATAATCAGCAAACCACACCGAAACACCATAATCT
CCTGGACACCAACTCAACACCCCCCCCCACCCACTACATCCTTAACACATGAATATGCTATATGC
TACTTGCCTACGTTCACCTTGCACGAGGCAAACTTGCGGAGCGCCCGCAAAAACACCGCGTACGA
CATCTCCTTGTTGTCGGGCTCCCAGTAGATCTCCGAGAGCCGGATGTGCCACGGCGGGTAGTCCT
GCAAGTCCAAGTTGGGCCCAAAGCTGATCAACAAGTCGGGCTCGG
Found at i:152235 original size:15 final size:16
Alignment explanation
Indices: 152215--152248 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
152205 TCAAGTAAAG
152215 TGTAATT-AACCACAC
1 TGTAATTAAACCACAC
*
152230 TGTAATTAAACCACTC
1 TGTAATTAAACCACAC
152246 TGT
1 TGT
152249 GTCTAGCCAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 7 0.41
16 10 0.59
ACGTcount: A:0.35, C:0.24, G:0.09, T:0.32
Consensus pattern (16 bp):
TGTAATTAAACCACAC
Left flanking sequence: Indices 151715 -- 152214
CCTTATGGCTGATGCCTGCTGCAGGTTGCACCCATTATCTTCACGATCACTTCACCGAGACAATC
AGACCATAATGGGAATTGCGATGAGCCTGGATTGTAATGGGATGGTCGTAAGGGTGAGGGTGTAA
TCCAGACAATTGTCCATCTGACTGATGCTTGCAACAGAACTCTTAAACCGGAATTGATTCTTGCT
TGCAACACAACTCTCAAAATTGGATTGATTCTACAGATCGTATACACTATTCGCAAAAGGTTATA
GTTCTGCGTACTACAATTAAACACGCCGTAAAACAACTACTTTAGAAGACCTATTTTAGAAAACT
TACTTTAAAAAACTTACCTACATTAGGAAACAGATCCACAACCATTGAATCGATCACAGCCATTC
CCACTAGCCAACAATGCAAGAAGCTTATGGTTATATCCAGGTTACGGTGATAATCCAGCTTACGA
TATACAACTCTGATTACGTACACTCAGGCACAGTATCAAGTAAAG
Right flanking sequence: Indices 152249 -- 152748
GTCTAGCCATCCATGTTCCCTAGTGTAATCACTGATAATCAGCAAACCACACCGAAACACCATAA
TCTCCTGGACACCAACTCAACACCCCCCCCCACCCACTACATCCTTAACACATGAATATGCTATA
TGCTACTTGCCTACGTTCACCTTGCACGAGGCAAACTTGCGGAGCGCCCGCAAAAACACCGCGTA
CGACATCTCCTTGTTGTCGGGCTCCCAGTAGATCTCCGAGAGCCGGATGTGCCACGGCGGGTAGT
CCTGCAAGTCCAAGTTGGGCCCAAAGCTGATCAACAAGTCGGGCTCGGGCCCCACCAACTCCAAC
AACTCCTCGTCGATCAAGTCGACCGAGATGTCCTGCACGCTCAACTCGTTGTTCTGCGCCAACTC
GCTCATGGTTTTGGTGAGCTCGACAATGGTGGGCTTGCCGTCCATCCGCGACAAGAGGGTGATGG
CCAAGTCCTTGCGCCCGGGCGCCAGATCGGAGTGGGTGGTGATGT
Found at i:153876 original size:12 final size:12
Alignment explanation
Indices: 153851--153886 Score: 56
Period size: 11 Copynumber: 3.1 Consensus size: 12
153841 TGGTGGTAGA
153851 GGGAAATAGAGG
1 GGGAAATAGAGG
153863 GGG-AATAGAGG
1 GGGAAATAGAGG
*
153874 GGGAAATGGAGG
1 GGGAAATAGAGG
153886 G
1 G
153887 AAGGGGGGTA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
11 11 0.50
12 11 0.50
ACGTcount: A:0.36, C:0.00, G:0.56, T:0.08
Consensus pattern (12 bp):
GGGAAATAGAGG
Left flanking sequence: Indices 153351 -- 153850
CCGTTGCCCGTGGCGCTGTGGATCGAGCGGGTGTCCTCGGCAGCCACACCCGTTTCCACCCGCCC
GCTGGGCTCAAAAGCCTCCACGGGCTTGCGCGCGATAACGGTGTCGGACCCGAGGTCGACCCCCA
GCGCCAACGCGAGGTCGTCGCCAGCGAGCGAGGCCGCCAGGTGGAGGGTCGAGGGAGAGGTGTTC
TGCAGGCTGAGGCTGTCGCCAGCACCGCTGCGGTCGCCTTCGGAGTACGGAGACGACGGCTTGGA
CATGGTGAGGTGGAGGGCCGGTGATAATTTCGGGCGCGCAAGTGAATGTGACACGAAGCCGAGGC
AGCGAGATGGGCAGAAAAGGCGAGAAAAGCTGGTGGGGCGCTGTGGATGGGCGGGGGGGACGTGG
TTTGTGTTCTCGCTTGCGGTGGGTTTGTGGTTGCGGTGGGGTGTTCGATGCAGGGGCCTGTGATC
GGGCCATCAGGTGATGATGGGCAGGTATAGGGTGATGGTGGTAGA
Right flanking sequence: Indices 153887 -- 154386
AAGGGGGGTATATGCGTGTAGTGGTGGGTTGTAGTGGTTCTGGATATGTGGTAGTTTGTTCTTCT
GTGCTCTCATTTGTTCTTCTACCGTGTTTGTGCTCTTCCCTTGCCACCTCTTACCCGTTTTGGTG
GCCACTATCACAGGGTCTGATGCACTAATGCCAGGAGCAGCCCAGCGCGCAGACAGCAACTGGGC
CGCTGTCCGCCGCCATCCAGGCCACTAGAGGAGTCCCCACTAAGGTCCCCACTAGAGGTCCCACT
AGAGGTCCCCTTCCAGGTCTCACTTACCACTATACCTTTCCTACCTCCACTATTCTCTAATCCTC
GCACAATAGCCTAATCTTATTGTTGCAGCCAGATGTGGAGAATATGTGCGTAATTTAGCCATGCG
CGGGCCAGCCCGCCAGACACACCACGCCACCAGAAACCCCCGGGAAACCGCTCGGCCAGCCCCAC
CCCCCCTCGCCAACCCCTCCCCTGGCGGCCCGGCTGTTTTTAGCA
Found at i:154131 original size:12 final size:13
Alignment explanation
Indices: 154103--154156 Score: 76
Period size: 12 Copynumber: 4.2 Consensus size: 13
154093 GCCATCCAGG
154103 CCACTAGAGGAGTCC
1 CCACTAGA-G-GTCC
154118 CCACTA-AGGTCC
1 CCACTAGAGGTCC
154130 CCACTAGAGGT-C
1 CCACTAGAGGTCC
154142 CCACTAGAGGTCC
1 CCACTAGAGGTCC
154155 CC
1 CC
154157 TTCCAGGTCT
Statistics
Matches: 37, Mismatches: 0, Indels: 6
0.86 0.00 0.14
Matches are distributed among these distances:
12 22 0.59
13 8 0.22
14 1 0.03
15 6 0.16
ACGTcount: A:0.24, C:0.39, G:0.22, T:0.15
Consensus pattern (13 bp):
CCACTAGAGGTCC
Left flanking sequence: Indices 153603 -- 154102
GGCTTGGACATGGTGAGGTGGAGGGCCGGTGATAATTTCGGGCGCGCAAGTGAATGTGACACGAA
GCCGAGGCAGCGAGATGGGCAGAAAAGGCGAGAAAAGCTGGTGGGGCGCTGTGGATGGGCGGGGG
GGACGTGGTTTGTGTTCTCGCTTGCGGTGGGTTTGTGGTTGCGGTGGGGTGTTCGATGCAGGGGC
CTGTGATCGGGCCATCAGGTGATGATGGGCAGGTATAGGGTGATGGTGGTAGAGGGAAATAGAGG
GGGAATAGAGGGGGAAATGGAGGGAAGGGGGGTATATGCGTGTAGTGGTGGGTTGTAGTGGTTCT
GGATATGTGGTAGTTTGTTCTTCTGTGCTCTCATTTGTTCTTCTACCGTGTTTGTGCTCTTCCCT
TGCCACCTCTTACCCGTTTTGGTGGCCACTATCACAGGGTCTGATGCACTAATGCCAGGAGCAGC
CCAGCGCGCAGACAGCAACTGGGCCGCTGTCCGCCGCCATCCAGG
Right flanking sequence: Indices 154157 -- 154656
TTCCAGGTCTCACTTACCACTATACCTTTCCTACCTCCACTATTCTCTAATCCTCGCACAATAGC
CTAATCTTATTGTTGCAGCCAGATGTGGAGAATATGTGCGTAATTTAGCCATGCGCGGGCCAGCC
CGCCAGACACACCACGCCACCAGAAACCCCCGGGAAACCGCTCGGCCAGCCCCACCCCCCCTCGC
CAACCCCTCCCCTGGCGGCCCGGCTGTTTTTAGCAACACCTTTCTTTTTCCGCCGTTCCAGGCGT
GCTTAGCCCCCTCGTACATTTTTTCGAGACCATGACTAATCTTGGCACAGCAAGGTGGCACGCCA
CCCAAAACACCCGAAAACAACACCGTAGCACCCACACCGCCGTAGAAACATCCCCCTCTGCCCCG
CCCGCCCTCGTACTTTCTTTCTTTTCCCCTCGCCAAACGCACGGCCGAACCGCATTATCGCACCA
AATCAACCAACTACGGGGGAAAAAACCCGATCACTGGGGTATGAT
Found at i:154152 original size:25 final size:27
Alignment explanation
Indices: 154103--154156 Score: 78
Period size: 25 Copynumber: 2.1 Consensus size: 27
154093 GCCATCCAGG
154103 CCACTAGAGGAGTCCCCACTAAGGTCC
1 CCACTAGAGGAGTCCCCACTAAGGTCC
154130 CCACTAGA-G-GT-CCCACTAGAGGTCC
1 CCACTAGAGGAGTCCCCACTA-AGGTCC
154155 CC
1 CC
154157 TTCCAGGTCT
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
24 7 0.27
25 10 0.38
26 1 0.04
27 8 0.31
ACGTcount: A:0.24, C:0.39, G:0.22, T:0.15
Consensus pattern (27 bp):
CCACTAGAGGAGTCCCCACTAAGGTCC
Left flanking sequence: Indices 153603 -- 154102
GGCTTGGACATGGTGAGGTGGAGGGCCGGTGATAATTTCGGGCGCGCAAGTGAATGTGACACGAA
GCCGAGGCAGCGAGATGGGCAGAAAAGGCGAGAAAAGCTGGTGGGGCGCTGTGGATGGGCGGGGG
GGACGTGGTTTGTGTTCTCGCTTGCGGTGGGTTTGTGGTTGCGGTGGGGTGTTCGATGCAGGGGC
CTGTGATCGGGCCATCAGGTGATGATGGGCAGGTATAGGGTGATGGTGGTAGAGGGAAATAGAGG
GGGAATAGAGGGGGAAATGGAGGGAAGGGGGGTATATGCGTGTAGTGGTGGGTTGTAGTGGTTCT
GGATATGTGGTAGTTTGTTCTTCTGTGCTCTCATTTGTTCTTCTACCGTGTTTGTGCTCTTCCCT
TGCCACCTCTTACCCGTTTTGGTGGCCACTATCACAGGGTCTGATGCACTAATGCCAGGAGCAGC
CCAGCGCGCAGACAGCAACTGGGCCGCTGTCCGCCGCCATCCAGG
Right flanking sequence: Indices 154157 -- 154656
TTCCAGGTCTCACTTACCACTATACCTTTCCTACCTCCACTATTCTCTAATCCTCGCACAATAGC
CTAATCTTATTGTTGCAGCCAGATGTGGAGAATATGTGCGTAATTTAGCCATGCGCGGGCCAGCC
CGCCAGACACACCACGCCACCAGAAACCCCCGGGAAACCGCTCGGCCAGCCCCACCCCCCCTCGC
CAACCCCTCCCCTGGCGGCCCGGCTGTTTTTAGCAACACCTTTCTTTTTCCGCCGTTCCAGGCGT
GCTTAGCCCCCTCGTACATTTTTTCGAGACCATGACTAATCTTGGCACAGCAAGGTGGCACGCCA
CCCAAAACACCCGAAAACAACACCGTAGCACCCACACCGCCGTAGAAACATCCCCCTCTGCCCCG
CCCGCCCTCGTACTTTCTTTCTTTTCCCCTCGCCAAACGCACGGCCGAACCGCATTATCGCACCA
AATCAACCAACTACGGGGGAAAAAACCCGATCACTGGGGTATGAT
Found at i:156613 original size:16 final size:16
Alignment explanation
Indices: 156563--156640 Score: 108
Period size: 16 Copynumber: 5.1 Consensus size: 16
156553 GAGCTAGCGT
*
156563 GGAAGAGAT-AATGAG
1 GGAAGAGCTGAATGAG
* *
156578 GGAAGAGC-CAATG-T
1 GGAAGAGCTGAATGAG
156592 GGAAGAGCTGAATGAG
1 GGAAGAGCTGAATGAG
156608 GGAAGAGCTGAATGAG
1 GGAAGAGCTGAATGAG
156624 GGAAGAGCTGAATGAG
1 GGAAGAGCTGAATGAG
156640 G
1 G
156641 AGTTGTTTGA
Statistics
Matches: 56, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
14 8 0.14
15 15 0.27
16 33 0.59
ACGTcount: A:0.38, C:0.06, G:0.42, T:0.13
Consensus pattern (16 bp):
GGAAGAGCTGAATGAG
Left flanking sequence: Indices 156063 -- 156562
TTGTGTACTTTGTCGTGTACGAGACCAAGGGCCTCAAGCTCGAGGAGGTGGACTACATGTACCTC
ACGTGTCCCAACGCCCGGGCGCTGACGTCGTTCAAGTCGCGCAAGATCGACTACGACAACTACGA
CAACTTGGACATGGTGGTGATCTACGACCACCCGCAGCCGGCGCTGGCGCTGCTGCTGGAGCCCC
ACCTGAAGCCCGCGTTCCCGTTCCACGACCTGCTGGTGGACGGCGAGCTGACGAGCTGTTCGCGC
CGGCGGTCGCACCTGCTGGTGCAGGAGCTGAGGGAGCTGACGCGGGCGCTGCGGCCGCTGGCGCC
GGCGCGGAGCTCGACGTACGAGGTGTTGCCCGAGTACGGCACCCCCACCGAGTTGTGTGCGCCGG
TGGCCACCGACCAGTTTGTGCCCACGATCTGTCCGTTGGCGCTGCCGCCGCTGGACCTGCTGTCG
GAGAGCGAGGATAGTGGGGACGAGGAGGGTGGGAAGAGCTAGCGT
Right flanking sequence: Indices 156641 -- 157140
AGTTGTTTGACTGATGGGTGGGACTGGTTTAGTGCCACTGGAGCATTTGCCAATGGAGCATTGTT
TGGAGGTCACAGGTGACTGAAGCTAAGCTAGGGAGTATACCAGGTGTAAACTAGATGGCTAGTGG
GCATTTTGGCTGGTTTAGAAGCTGGCTGGTTTAGAAGCTGGCTGGTTTAGAAGCTGAATGGTTTG
GCTAGTGACAGGTTTGGCTAGTGACAGGTTTGAATAGTCAATGGTTTTACTGGTGATGGTTTCTA
TATTGATTAGTTTGACTATTGGCTGGTTTTATTGGTGATTGATTAATTGGCGATGGTCTTATCGG
TGACTGGTCTTATCGGTGACTGATTTGACAGTGACTGATTTGACAGGTGACAGGTTTGACAAGTA
ACCGGTTTGACAAGTAACTGGTTTGACAAGAGCTGGTTTGACAAGTACCTGGTTTGACAAGAACT
AGTTTGACAAGCAACTAGTTTATCAAGAACTGGTTTGTTTGCCAC
Done.