Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: scaffold50
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 186867
ACGTcount: A:0.22, C:0.28, G:0.27, T:0.23
File 1 of 2
Found at i:1016 original size:12 final size:12
Alignment explanation
Indices: 986--1017 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
976 GCCAGGCCCC
*
986 GCTGCCACTGCT
1 GCTGCCGCTGCT
998 GCTGCCGCTGCT
1 GCTGCCGCTGCT
1010 GCTGCCGC
1 GCTGCCGC
1018 CCCCGCGCCA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.03, C:0.44, G:0.31, T:0.22
Consensus pattern (12 bp):
GCTGCCGCTGCT
Left flanking sequence: Indices 486 -- 985
CCGCTGATCTTCTCCGACCTGCTCGGCGAGCGCCCCACCAAGCCCCGCGGCCTCGGCGACGCCGC
GCTGTTCTCCGACAAGCTGGTCAAGTCCCACGAGCGCGACGACTCCCTCGAGGGCGACTTTGGCC
TGCGCCACCACGTCGCCAAGCGCCGGCTGGCCGCGCTCTCCGCCGCCAACTCCCCGGAGGCGGTG
GTGCTGGACGGGGCGTTCCCCCCGCTCGACGACCCGCGCCGGTCGCCGCGGCCCCCGAAACAGGC
GCCCCCGGTGCCGCCGCTGCCCCGCGCCCCGCCCCCGTTCGCCATGCCCCGGCTCCCGGCGCCCC
CGCCCCAGGTGGCGCACTACCCGGTGGCCCCGGCGGCCCCCGTGCCCCCGGCGCCCGAGCCCATG
GACGTGGACGAAGTGCCCCCCCAGGTCCCGGAGAAGACCAACGAGGAGCTCCTCCGCTGCCGCAC
CGTGCGCAAAAAGCAGCAGAGCCAGCGCAAGTCGGGCCAGGCCCC
Right flanking sequence: Indices 1018 -- 1517
CCCCGCGCCACCCGCGCCTGCTCAAGACCCTCGACCCGCTGAAGCTCGAGGGCAAGGTGGCGGTG
CTCGACGTGGACGCCCCGCGGCGCCACCCCGAGCGGGGGCACCTGCGCCAGCTGCTGGGGGCACC
GCACCCCGGGCTCGACTTTGAGAAACCCAAGCTCGTGGCCGCCACCCTGCCCAGCGAGCGCCGGC
GCCGGGTGCGGTTGCTGCCGCTGGAGCTTAATGCGAAGGCGTTGCCGCCGTTGCCCATGGAGGTG
GACGACAGAGTGGACGACAAAGTGGTCGAAAAAGTGGGCGACAAACTGGGTGGGAATGCCATAGG
CGGTGGGGGTACCCTGGGCGGTGGGGGCCCCTCGGGGGGTGTCTTGAACACTGCCCCGCCTCCCC
CGCCTCCCCCGCCTCCCGCCCCCCACCACGGCCCCCACCACGGCCCCGACCCGTCCCTGGCCGCC
CCAGCGGGCACCGTGGCCCCTCCCAACACCTCGGCGACCCTGGCG
Found at i:1292 original size:12 final size:12
Alignment explanation
Indices: 1275--1322 Score: 60
Period size: 12 Copynumber: 4.0 Consensus size: 12
1265 GCCCATGGAG
*
1275 GTGGACGACAGA
1 GTGGACGACAAA
1287 GTGGACGACAAA
1 GTGGACGACAAA
* *
1299 GTGGTCGAAAAA
1 GTGGACGACAAA
*
1311 GTGGGCGACAAA
1 GTGGACGACAAA
1323 CTGGGTGGGA
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
12 31 1.00
ACGTcount: A:0.38, C:0.15, G:0.38, T:0.10
Consensus pattern (12 bp):
GTGGACGACAAA
Left flanking sequence: Indices 775 -- 1274
CGCCCCCGTTCGCCATGCCCCGGCTCCCGGCGCCCCCGCCCCAGGTGGCGCACTACCCGGTGGCC
CCGGCGGCCCCCGTGCCCCCGGCGCCCGAGCCCATGGACGTGGACGAAGTGCCCCCCCAGGTCCC
GGAGAAGACCAACGAGGAGCTCCTCCGCTGCCGCACCGTGCGCAAAAAGCAGCAGAGCCAGCGCA
AGTCGGGCCAGGCCCCGCTGCCACTGCTGCTGCCGCTGCTGCTGCCGCCCCCGCGCCACCCGCGC
CTGCTCAAGACCCTCGACCCGCTGAAGCTCGAGGGCAAGGTGGCGGTGCTCGACGTGGACGCCCC
GCGGCGCCACCCCGAGCGGGGGCACCTGCGCCAGCTGCTGGGGGCACCGCACCCCGGGCTCGACT
TTGAGAAACCCAAGCTCGTGGCCGCCACCCTGCCCAGCGAGCGCCGGCGCCGGGTGCGGTTGCTG
CCGCTGGAGCTTAATGCGAAGGCGTTGCCGCCGTTGCCCATGGAG
Right flanking sequence: Indices 1323 -- 1822
CTGGGTGGGAATGCCATAGGCGGTGGGGGTACCCTGGGCGGTGGGGGCCCCTCGGGGGGTGTCTT
GAACACTGCCCCGCCTCCCCCGCCTCCCCCGCCTCCCGCCCCCCACCACGGCCCCCACCACGGCC
CCGACCCGTCCCTGGCCGCCCCAGCGGGCACCGTGGCCCCTCCCAACACCTCGGCGACCCTGGCG
GCGTCGGTGCAGTCGCTGGGCCTGGGCCCGTCGCTGGCCCGCCTGGCGGTGCTGGCATCGCTGGC
CACGTCCTCCCAGCCCCAGGCAGTAGCCCAGGCGTCGCTGGTGGCGCCCGCGGCGTCCCAGGCGT
CGCTGGCGCTGCTGGCGGCCCCCCTGGCGGCCCCGCTCCGCCCGCTGCTGCTGGTGACCACCCCG
GAGCTCCAGCTGACGGGCACCATCACCACCACGCTCTTGACACCCACCCTGGCGCCGTCGTCGCA
CTACAAACCCGCGGCGGCCCCCGGAGCGCTGCTGGCCACCGTCAC
Found at i:1416 original size:8 final size:9
Alignment explanation
Indices: 1396--1424 Score: 58
Period size: 9 Copynumber: 3.2 Consensus size: 9
1386 TTGAACACTG
1396 CCCCGCCTC
1 CCCCGCCTC
1405 CCCCGCCTC
1 CCCCGCCTC
1414 CCCCGCCTC
1 CCCCGCCTC
1423 CC
1 CC
1425 GCCCCCCACC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.00, C:0.79, G:0.10, T:0.10
Consensus pattern (9 bp):
CCCCGCCTC
Left flanking sequence: Indices 896 -- 1395
CCAGGTCCCGGAGAAGACCAACGAGGAGCTCCTCCGCTGCCGCACCGTGCGCAAAAAGCAGCAGA
GCCAGCGCAAGTCGGGCCAGGCCCCGCTGCCACTGCTGCTGCCGCTGCTGCTGCCGCCCCCGCGC
CACCCGCGCCTGCTCAAGACCCTCGACCCGCTGAAGCTCGAGGGCAAGGTGGCGGTGCTCGACGT
GGACGCCCCGCGGCGCCACCCCGAGCGGGGGCACCTGCGCCAGCTGCTGGGGGCACCGCACCCCG
GGCTCGACTTTGAGAAACCCAAGCTCGTGGCCGCCACCCTGCCCAGCGAGCGCCGGCGCCGGGTG
CGGTTGCTGCCGCTGGAGCTTAATGCGAAGGCGTTGCCGCCGTTGCCCATGGAGGTGGACGACAG
AGTGGACGACAAAGTGGTCGAAAAAGTGGGCGACAAACTGGGTGGGAATGCCATAGGCGGTGGGG
GTACCCTGGGCGGTGGGGGCCCCTCGGGGGGTGTCTTGAACACTG
Right flanking sequence: Indices 1425 -- 1924
GCCCCCCACCACGGCCCCCACCACGGCCCCGACCCGTCCCTGGCCGCCCCAGCGGGCACCGTGGC
CCCTCCCAACACCTCGGCGACCCTGGCGGCGTCGGTGCAGTCGCTGGGCCTGGGCCCGTCGCTGG
CCCGCCTGGCGGTGCTGGCATCGCTGGCCACGTCCTCCCAGCCCCAGGCAGTAGCCCAGGCGTCG
CTGGTGGCGCCCGCGGCGTCCCAGGCGTCGCTGGCGCTGCTGGCGGCCCCCCTGGCGGCCCCGCT
CCGCCCGCTGCTGCTGGTGACCACCCCGGAGCTCCAGCTGACGGGCACCATCACCACCACGCTCT
TGACACCCACCCTGGCGCCGTCGTCGCACTACAAACCCGCGGCGGCCCCCGGAGCGCTGCTGGCC
ACCGTCACCTACACCGTGCCGTACCAGAAGGTGCCCGAGGAGCTCCAGGAGCAGAACCTGCTCAA
CGCGTACCCGGCGGGGCCGCGCAACGTGCTCAACGACCGCATCTT
Found at i:1454 original size:11 final size:12
Alignment explanation
Indices: 1427--1454 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
1417 CGCCTCCCGC
1427 CCCCCACCACGG
1 CCCCCACCACGG
1439 CCCCCACCACGG
1 CCCCCACCACGG
1451 CCCC
1 CCCC
1455 GACCCGTCCC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.14, C:0.71, G:0.14, T:0.00
Consensus pattern (12 bp):
CCCCCACCACGG
Left flanking sequence: Indices 927 -- 1426
CTCCGCTGCCGCACCGTGCGCAAAAAGCAGCAGAGCCAGCGCAAGTCGGGCCAGGCCCCGCTGCC
ACTGCTGCTGCCGCTGCTGCTGCCGCCCCCGCGCCACCCGCGCCTGCTCAAGACCCTCGACCCGC
TGAAGCTCGAGGGCAAGGTGGCGGTGCTCGACGTGGACGCCCCGCGGCGCCACCCCGAGCGGGGG
CACCTGCGCCAGCTGCTGGGGGCACCGCACCCCGGGCTCGACTTTGAGAAACCCAAGCTCGTGGC
CGCCACCCTGCCCAGCGAGCGCCGGCGCCGGGTGCGGTTGCTGCCGCTGGAGCTTAATGCGAAGG
CGTTGCCGCCGTTGCCCATGGAGGTGGACGACAGAGTGGACGACAAAGTGGTCGAAAAAGTGGGC
GACAAACTGGGTGGGAATGCCATAGGCGGTGGGGGTACCCTGGGCGGTGGGGGCCCCTCGGGGGG
TGTCTTGAACACTGCCCCGCCTCCCCCGCCTCCCCCGCCTCCCGC
Right flanking sequence: Indices 1455 -- 1954
GACCCGTCCCTGGCCGCCCCAGCGGGCACCGTGGCCCCTCCCAACACCTCGGCGACCCTGGCGGC
GTCGGTGCAGTCGCTGGGCCTGGGCCCGTCGCTGGCCCGCCTGGCGGTGCTGGCATCGCTGGCCA
CGTCCTCCCAGCCCCAGGCAGTAGCCCAGGCGTCGCTGGTGGCGCCCGCGGCGTCCCAGGCGTCG
CTGGCGCTGCTGGCGGCCCCCCTGGCGGCCCCGCTCCGCCCGCTGCTGCTGGTGACCACCCCGGA
GCTCCAGCTGACGGGCACCATCACCACCACGCTCTTGACACCCACCCTGGCGCCGTCGTCGCACT
ACAAACCCGCGGCGGCCCCCGGAGCGCTGCTGGCCACCGTCACCTACACCGTGCCGTACCAGAAG
GTGCCCGAGGAGCTCCAGGAGCAGAACCTGCTCAACGCGTACCCGGCGGGGCCGCGCAACGTGCT
CAACGACCGCATCTTCTTGTACCTGGACCCGCAGTTGCTGCCGGT
Found at i:2089 original size:21 final size:21
Alignment explanation
Indices: 2065--2135 Score: 56
Period size: 21 Copynumber: 3.2 Consensus size: 21
2055 TCTACGAGTG
2065 CTGGT-TTTGGTACTGGTTCTA
1 CTGGTGTTT-GTACTGGTTCTA
*
2086 CTGGTGGTTT-TACTAGCGGTTTTA
1 CTGGT-GTTTGTACT---GGTTCTA
* *
2110 CTGGTGGTTCTACTGGTTCTA
1 CTGGTGTTTGTACTGGTTCTA
2131 CTGGT
1 CTGGT
2136 TCTGGTTCTG
Statistics
Matches: 41, Mismatches: 3, Indels: 12
0.73 0.05 0.21
Matches are distributed among these distances:
21 20 0.49
23 6 0.15
24 15 0.37
ACGTcount: A:0.10, C:0.15, G:0.30, T:0.45
Consensus pattern (21 bp):
CTGGTGTTTGTACTGGTTCTA
Left flanking sequence: Indices 1565 -- 2064
GGTGCTGGCATCGCTGGCCACGTCCTCCCAGCCCCAGGCAGTAGCCCAGGCGTCGCTGGTGGCGC
CCGCGGCGTCCCAGGCGTCGCTGGCGCTGCTGGCGGCCCCCCTGGCGGCCCCGCTCCGCCCGCTG
CTGCTGGTGACCACCCCGGAGCTCCAGCTGACGGGCACCATCACCACCACGCTCTTGACACCCAC
CCTGGCGCCGTCGTCGCACTACAAACCCGCGGCGGCCCCCGGAGCGCTGCTGGCCACCGTCACCT
ACACCGTGCCGTACCAGAAGGTGCCCGAGGAGCTCCAGGAGCAGAACCTGCTCAACGCGTACCCG
GCGGGGCCGCGCAACGTGCTCAACGACCGCATCTTCTTGTACCTGGACCCGCAGTTGCTGCCGGT
GGCGGTGGACATCAACGAGTACGACTTGGTGATCAATGTGGCCAAGGAGTGTCCCGATCTCTCTG
GGGCGTACAGTGGTCCAGGGAGGAGTGGTGGTGGCTCTACGAGTG
Right flanking sequence: Indices 2136 -- 2635
TCTGGTTCTGGTTCTGGTTCTACCTCTGGAGCTCCCTCCAGTGCTCCTAACCCGCTGGCTCCGCT
CACGCCCCTCTACATGTATGTCCCGTGGCAGCACACGCTGGCCATCTCCAAGGACCTCGGGCACA
TCACCGACACCATGCAACAGTACTTGGACCGCGGCCAGCGCATCTTGGTGCACTGCCAGTGCGGG
GTGTCCCGTCTGGCGTGTGTGATTGTCGCGTTCTTCATGGCCAAGTTTGGCCTTGGCGTCAACCA
GGCGTACGAGCTCTTGAAGCTGGGCACCGCTGGTGCCAGTTCCGACGTGGTGGTGGCCAACGTCA
CCGACAAGGGCAACGTGATTGACGCGTGCGACCGCATTTGTCCGAACATGTCGTTGATCTTTGAG
TTGATGGAGTTTGGCGATCTTTTGAAGCAGTAGAGTAGAAGAAGATGATGTATTATTTATAGGAA
TGAAGGAAGAGGAAAGGATGGTACGATTTGTAGATGAAAGGAGGG
Found at i:2093 original size:12 final size:12
Alignment explanation
Indices: 2078--2126 Score: 62
Period size: 12 Copynumber: 4.1 Consensus size: 12
2068 GTTTTGGTAC
2078 TGGTTCTACTGG
1 TGGTTCTACTGG
* *
2090 TGGTTTTACTAG
1 TGGTTCTACTGG
* *
2102 CGGTTTTACTGG
1 TGGTTCTACTGG
2114 TGGTTCTACTGG
1 TGGTTCTACTGG
2126 T
1 T
2127 TCTACTGGTT
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
12 31 1.00
ACGTcount: A:0.10, C:0.14, G:0.31, T:0.45
Consensus pattern (12 bp):
TGGTTCTACTGG
Left flanking sequence: Indices 1578 -- 2077
CTGGCCACGTCCTCCCAGCCCCAGGCAGTAGCCCAGGCGTCGCTGGTGGCGCCCGCGGCGTCCCA
GGCGTCGCTGGCGCTGCTGGCGGCCCCCCTGGCGGCCCCGCTCCGCCCGCTGCTGCTGGTGACCA
CCCCGGAGCTCCAGCTGACGGGCACCATCACCACCACGCTCTTGACACCCACCCTGGCGCCGTCG
TCGCACTACAAACCCGCGGCGGCCCCCGGAGCGCTGCTGGCCACCGTCACCTACACCGTGCCGTA
CCAGAAGGTGCCCGAGGAGCTCCAGGAGCAGAACCTGCTCAACGCGTACCCGGCGGGGCCGCGCA
ACGTGCTCAACGACCGCATCTTCTTGTACCTGGACCCGCAGTTGCTGCCGGTGGCGGTGGACATC
AACGAGTACGACTTGGTGATCAATGTGGCCAAGGAGTGTCCCGATCTCTCTGGGGCGTACAGTGG
TCCAGGGAGGAGTGGTGGTGGCTCTACGAGTGCTGGTTTTGGTAC
Right flanking sequence: Indices 2127 -- 2626
TCTACTGGTTCTGGTTCTGGTTCTGGTTCTACCTCTGGAGCTCCCTCCAGTGCTCCTAACCCGCT
GGCTCCGCTCACGCCCCTCTACATGTATGTCCCGTGGCAGCACACGCTGGCCATCTCCAAGGACC
TCGGGCACATCACCGACACCATGCAACAGTACTTGGACCGCGGCCAGCGCATCTTGGTGCACTGC
CAGTGCGGGGTGTCCCGTCTGGCGTGTGTGATTGTCGCGTTCTTCATGGCCAAGTTTGGCCTTGG
CGTCAACCAGGCGTACGAGCTCTTGAAGCTGGGCACCGCTGGTGCCAGTTCCGACGTGGTGGTGG
CCAACGTCACCGACAAGGGCAACGTGATTGACGCGTGCGACCGCATTTGTCCGAACATGTCGTTG
ATCTTTGAGTTGATGGAGTTTGGCGATCTTTTGAAGCAGTAGAGTAGAAGAAGATGATGTATTAT
TTATAGGAATGAAGGAAGAGGAAAGGATGGTACGATTTGTAGATG
Found at i:2093 original size:24 final size:24
Alignment explanation
Indices: 2066--2135 Score: 76
Period size: 24 Copynumber: 3.0 Consensus size: 24
2056 CTACGAGTGC
*
2066 TGGTTTTGGTACTGGTTCTACTGG
1 TGGTTTTGCTACTGGTTCTACTGG
* *
2090 TGGTTTTACTAGC-GGTTTTACTGG
1 TGGTTTTGCTA-CTGGTTCTACTGG
2114 TGG--TT-CTACTGGTTCTACTGG
1 TGGTTTTGCTACTGGTTCTACTGG
2135 T
1 T
2136 TCTGGTTCTG
Statistics
Matches: 40, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
20 1 0.03
21 14 0.35
22 2 0.05
24 22 0.55
25 1 0.03
ACGTcount: A:0.10, C:0.14, G:0.30, T:0.46
Consensus pattern (24 bp):
TGGTTTTGCTACTGGTTCTACTGG
Left flanking sequence: Indices 1566 -- 2065
GTGCTGGCATCGCTGGCCACGTCCTCCCAGCCCCAGGCAGTAGCCCAGGCGTCGCTGGTGGCGCC
CGCGGCGTCCCAGGCGTCGCTGGCGCTGCTGGCGGCCCCCCTGGCGGCCCCGCTCCGCCCGCTGC
TGCTGGTGACCACCCCGGAGCTCCAGCTGACGGGCACCATCACCACCACGCTCTTGACACCCACC
CTGGCGCCGTCGTCGCACTACAAACCCGCGGCGGCCCCCGGAGCGCTGCTGGCCACCGTCACCTA
CACCGTGCCGTACCAGAAGGTGCCCGAGGAGCTCCAGGAGCAGAACCTGCTCAACGCGTACCCGG
CGGGGCCGCGCAACGTGCTCAACGACCGCATCTTCTTGTACCTGGACCCGCAGTTGCTGCCGGTG
GCGGTGGACATCAACGAGTACGACTTGGTGATCAATGTGGCCAAGGAGTGTCCCGATCTCTCTGG
GGCGTACAGTGGTCCAGGGAGGAGTGGTGGTGGCTCTACGAGTGC
Right flanking sequence: Indices 2136 -- 2635
TCTGGTTCTGGTTCTGGTTCTACCTCTGGAGCTCCCTCCAGTGCTCCTAACCCGCTGGCTCCGCT
CACGCCCCTCTACATGTATGTCCCGTGGCAGCACACGCTGGCCATCTCCAAGGACCTCGGGCACA
TCACCGACACCATGCAACAGTACTTGGACCGCGGCCAGCGCATCTTGGTGCACTGCCAGTGCGGG
GTGTCCCGTCTGGCGTGTGTGATTGTCGCGTTCTTCATGGCCAAGTTTGGCCTTGGCGTCAACCA
GGCGTACGAGCTCTTGAAGCTGGGCACCGCTGGTGCCAGTTCCGACGTGGTGGTGGCCAACGTCA
CCGACAAGGGCAACGTGATTGACGCGTGCGACCGCATTTGTCCGAACATGTCGTTGATCTTTGAG
TTGATGGAGTTTGGCGATCTTTTGAAGCAGTAGAGTAGAAGAAGATGATGTATTATTTATAGGAA
TGAAGGAAGAGGAAAGGATGGTACGATTTGTAGATGAAAGGAGGG
Found at i:2128 original size:9 final size:9
Alignment explanation
Indices: 2114--2138 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
2104 GTTTTACTGG
2114 TGGTTCTAC
1 TGGTTCTAC
2123 TGGTTCTAC
1 TGGTTCTAC
2132 TGGTTCT
1 TGGTTCT
2139 GGTTCTGGTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.08, C:0.20, G:0.24, T:0.48
Consensus pattern (9 bp):
TGGTTCTAC
Left flanking sequence: Indices 1614 -- 2113
GCGTCGCTGGTGGCGCCCGCGGCGTCCCAGGCGTCGCTGGCGCTGCTGGCGGCCCCCCTGGCGGC
CCCGCTCCGCCCGCTGCTGCTGGTGACCACCCCGGAGCTCCAGCTGACGGGCACCATCACCACCA
CGCTCTTGACACCCACCCTGGCGCCGTCGTCGCACTACAAACCCGCGGCGGCCCCCGGAGCGCTG
CTGGCCACCGTCACCTACACCGTGCCGTACCAGAAGGTGCCCGAGGAGCTCCAGGAGCAGAACCT
GCTCAACGCGTACCCGGCGGGGCCGCGCAACGTGCTCAACGACCGCATCTTCTTGTACCTGGACC
CGCAGTTGCTGCCGGTGGCGGTGGACATCAACGAGTACGACTTGGTGATCAATGTGGCCAAGGAG
TGTCCCGATCTCTCTGGGGCGTACAGTGGTCCAGGGAGGAGTGGTGGTGGCTCTACGAGTGCTGG
TTTTGGTACTGGTTCTACTGGTGGTTTTACTAGCGGTTTTACTGG
Right flanking sequence: Indices 2139 -- 2638
GGTTCTGGTTCTGGTTCTACCTCTGGAGCTCCCTCCAGTGCTCCTAACCCGCTGGCTCCGCTCAC
GCCCCTCTACATGTATGTCCCGTGGCAGCACACGCTGGCCATCTCCAAGGACCTCGGGCACATCA
CCGACACCATGCAACAGTACTTGGACCGCGGCCAGCGCATCTTGGTGCACTGCCAGTGCGGGGTG
TCCCGTCTGGCGTGTGTGATTGTCGCGTTCTTCATGGCCAAGTTTGGCCTTGGCGTCAACCAGGC
GTACGAGCTCTTGAAGCTGGGCACCGCTGGTGCCAGTTCCGACGTGGTGGTGGCCAACGTCACCG
ACAAGGGCAACGTGATTGACGCGTGCGACCGCATTTGTCCGAACATGTCGTTGATCTTTGAGTTG
ATGGAGTTTGGCGATCTTTTGAAGCAGTAGAGTAGAAGAAGATGATGTATTATTTATAGGAATGA
AGGAAGAGGAAAGGATGGTACGATTTGTAGATGAAAGGAGGGTAG
Found at i:2142 original size:6 final size:6
Alignment explanation
Indices: 2131--2156 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
2121 ACTGGTTCTA
2131 CTGGTT CTGGTT CTGGTT CTGGTT CT
1 CTGGTT CTGGTT CTGGTT CTGGTT CT
2157 ACCTCTGGAG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.00, C:0.19, G:0.31, T:0.50
Consensus pattern (6 bp):
CTGGTT
Left flanking sequence: Indices 1631 -- 2130
CGCGGCGTCCCAGGCGTCGCTGGCGCTGCTGGCGGCCCCCCTGGCGGCCCCGCTCCGCCCGCTGC
TGCTGGTGACCACCCCGGAGCTCCAGCTGACGGGCACCATCACCACCACGCTCTTGACACCCACC
CTGGCGCCGTCGTCGCACTACAAACCCGCGGCGGCCCCCGGAGCGCTGCTGGCCACCGTCACCTA
CACCGTGCCGTACCAGAAGGTGCCCGAGGAGCTCCAGGAGCAGAACCTGCTCAACGCGTACCCGG
CGGGGCCGCGCAACGTGCTCAACGACCGCATCTTCTTGTACCTGGACCCGCAGTTGCTGCCGGTG
GCGGTGGACATCAACGAGTACGACTTGGTGATCAATGTGGCCAAGGAGTGTCCCGATCTCTCTGG
GGCGTACAGTGGTCCAGGGAGGAGTGGTGGTGGCTCTACGAGTGCTGGTTTTGGTACTGGTTCTA
CTGGTGGTTTTACTAGCGGTTTTACTGGTGGTTCTACTGGTTCTA
Right flanking sequence: Indices 2157 -- 2656
ACCTCTGGAGCTCCCTCCAGTGCTCCTAACCCGCTGGCTCCGCTCACGCCCCTCTACATGTATGT
CCCGTGGCAGCACACGCTGGCCATCTCCAAGGACCTCGGGCACATCACCGACACCATGCAACAGT
ACTTGGACCGCGGCCAGCGCATCTTGGTGCACTGCCAGTGCGGGGTGTCCCGTCTGGCGTGTGTG
ATTGTCGCGTTCTTCATGGCCAAGTTTGGCCTTGGCGTCAACCAGGCGTACGAGCTCTTGAAGCT
GGGCACCGCTGGTGCCAGTTCCGACGTGGTGGTGGCCAACGTCACCGACAAGGGCAACGTGATTG
ACGCGTGCGACCGCATTTGTCCGAACATGTCGTTGATCTTTGAGTTGATGGAGTTTGGCGATCTT
TTGAAGCAGTAGAGTAGAAGAAGATGATGTATTATTTATAGGAATGAAGGAAGAGGAAAGGATGG
TACGATTTGTAGATGAAAGGAGGGTAGGACTGTGGAAGAAGGTAC
Found at i:2689 original size:19 final size:19
Alignment explanation
Indices: 2642--2679 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
2632 AGGGTAGGAC
*
2642 TGTGGAAGAAGGTACGATT
1 TGTGGGAGAAGGTACGATT
2661 TGTGGGAGAAGGTACGATT
1 TGTGGGAGAAGGTACGATT
2680 ATTTGTAGAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.29, C:0.05, G:0.39, T:0.26
Consensus pattern (19 bp):
TGTGGGAGAAGGTACGATT
Left flanking sequence: Indices 2142 -- 2641
TCTGGTTCTGGTTCTACCTCTGGAGCTCCCTCCAGTGCTCCTAACCCGCTGGCTCCGCTCACGCC
CCTCTACATGTATGTCCCGTGGCAGCACACGCTGGCCATCTCCAAGGACCTCGGGCACATCACCG
ACACCATGCAACAGTACTTGGACCGCGGCCAGCGCATCTTGGTGCACTGCCAGTGCGGGGTGTCC
CGTCTGGCGTGTGTGATTGTCGCGTTCTTCATGGCCAAGTTTGGCCTTGGCGTCAACCAGGCGTA
CGAGCTCTTGAAGCTGGGCACCGCTGGTGCCAGTTCCGACGTGGTGGTGGCCAACGTCACCGACA
AGGGCAACGTGATTGACGCGTGCGACCGCATTTGTCCGAACATGTCGTTGATCTTTGAGTTGATG
GAGTTTGGCGATCTTTTGAAGCAGTAGAGTAGAAGAAGATGATGTATTATTTATAGGAATGAAGG
AAGAGGAAAGGATGGTACGATTTGTAGATGAAAGGAGGGTAGGAC
Right flanking sequence: Indices 2680 -- 3179
ATTTGTAGAAAGGAGGCTAAGTGTATGGTATCCAGGTCCAGGTACAATAAGGATTGACAGATTGA
GAGCTCTTTCTTGATATTGAGGGTGTGGCGTTCTTCGTTCGTGGAGTGATTGGTCTGCTTAATTG
CGGTAACGAACGAATCTTCTTTGAATAGGCGTGCTATCGCTAGTGGGGTCTCTTAGAGGAATTAC
CGGCATCAAGCTAATAGAAATGAGGCACTACAGGTCTGTGATGCCACCTATTTATGCAGCCCGCT
GCAGGGTTGACAGGTTGAAGATTAAACGGTGGTGGGGTGTAGAGGGTGATAAGGAGAAGTTAATA
ATTGTGGCTTGAGCTTGATAAACGCTGGTGAATGGTTTGAAAGATTTTGGGGTTTTCAGGCCTGA
ATGATTGGTGGTTGAGGAAATAATACTTGTATGCTTTCAGTGAACATTGATGTAAAGGCAAGGCT
TAAACCAGTATCTTCAGGTTTGTATTGAGTAACCACCTAAGCTAC
Found at i:4130 original size:23 final size:23
Alignment explanation
Indices: 4082--4137 Score: 67
Period size: 23 Copynumber: 2.4 Consensus size: 23
4072 CGTAGAACAC
* *
4082 TCTCCCCACCATTCTCTTCACAT
1 TCTCCCCACTATTCTCTCCACAT
* *
4105 TCTCCCCACTATTCTCTCCTCTT
1 TCTCCCCACTATTCTCTCCACAT
*
4128 TCTCACCACT
1 TCTCCCCACT
4138 CTCACATTCT
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
23 28 1.00
ACGTcount: A:0.14, C:0.48, G:0.00, T:0.38
Consensus pattern (23 bp):
TCTCCCCACTATTCTCTCCACAT
Left flanking sequence: Indices 3582 -- 4081
TAAAGAAATTCCATATTGAGTGTGGCGATGGTGACCTATGCATGACACGAACTAATCGGTGTTGC
GTAGCCAATACTGACTCTGGATAGTATTCTTGTGTGTAGACGTTGGTGGTTGAAAATTTGGACGA
CACTTCTGAAGCTACGAGCTCTTCTCCGGCCAAGAGCTATTTTCAATTGAATCGCTCACCGTAAC
GGGCACCGGGGACCACATATAGGCCCACAAATTGGTCCACAGATCCGTGTGACTGATACAAATGC
AAACCTCTATTTAAAGCCCATTTTCTGGTCCCTCAGAGTCACAATTGCCGTATTATTCGCTACCG
TTGCCCCCACGCCAACGGCTCATCTCGCATAAGGTTGCATACGTCAGTTGCCTAAAGCCATAACC
TAAAGATGCAGGCAACCAGCTGAAATATTTTACACCAAACTGCGCCTACGCCCCGGCGAGAAGTG
TCTAACATATCAAAATCCACTTGTCCTCGCTAGCCCGTAGAACAC
Right flanking sequence: Indices 4138 -- 4637
CTCACATTCTCTACACTCAAACGCATTGCCCCCGCCATCACTCACCCTCTATCCTATTATCATGT
ATTTCTATGGTATTAAATGCGCTCAACGCACGTAGGAGCCACTGGCCCGCGCCTGAGTTTCCAAC
CAGGCCGCCGGGTCCAGTACACGGCAAATGCTAGCCACGGGGGTTTATCGGCTAGTTATCGATGA
GGTACACAAGCGTCCATGCTGAACCGGCGGCAATCGATCCGATTGCCACCATCTGTATTCCTTCG
CTGAATTTCTTGGCCCGTCCACAGTCGTCGCCAAGGGCAATCAGGGTCTTGACGTACCCGAAAAT
GAACAACGTGATCAACATCACAAGCACCGAGATCATCAACCCGGTGCCAACGTGGTTGGCGAAAA
AGTAGGGCACCAACGGCACAAAACCACCGAAAAAGTACGACAACCCAATGGTCAACGCCAGGGTC
AACTGGCGGCCCTCGGCGGGCTCCTCGAGGCCCTTGCCAAACCGA
Found at i:5772 original size:22 final size:22
Alignment explanation
Indices: 5747--5823 Score: 127
Period size: 22 Copynumber: 3.5 Consensus size: 22
5737 TAGGAAAGGT
*
5747 TTAGGTAAGGAGTGGAAGAGGA
1 TTAGGTAAGGAGTGGAAGAAGA
5769 TTAGGTAAGGAGTGGAAGAAGA
1 TTAGGTAAGGAGTGGAAGAAGA
* *
5791 TTAGGTAAGGAGTGGCATAAGA
1 TTAGGTAAGGAGTGGAAGAAGA
5813 TTAGGTAAGGA
1 TTAGGTAAGGA
5824 TTTTCACGTG
Statistics
Matches: 52, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 52 1.00
ACGTcount: A:0.38, C:0.01, G:0.40, T:0.21
Consensus pattern (22 bp):
TTAGGTAAGGAGTGGAAGAAGA
Left flanking sequence: Indices 5247 -- 5746
GATAAGGGGGTAGATCACCGGTTCTTTGTTGATTTAAACTTGCCGGCGCAGCCCTGCTATATATG
GGGTATGTGCAGGAAGATTTTTCGTTACAGACACTGTGCCTGCATCGGGGCCACAGGGTCCTCAC
AGGGAGCGGGCCAATGAGAGCGCGCGAAAATGTCAGCAGTGGCGGGATGAGCAACGATGGCACCA
GCCACAGAGAGCACGGAGAAGTAAGCAGGTGCCGAGGGAGAGAAAAAACTACTGGAAAAGAACCG
GCCCGTCGCACCCTCCGCTCGTGTGCTTGTCCTTGGCTGGCTACACTTGTTGATTGCCTTCCCAA
CGGTGCCAAGCCTTTCTGCAGGGACGGGCAAAACAAACAAATAGCGGATCCGGAAAATATGTGGT
GACAGAACAAAGCGCAATTAGGCGGGGAGACGGCGGTCGGAGTCGTGTCGGCTCCAACAGCGAGG
GTACGGTCCACATTTTTGCCTCCTGGTTACTATTTTAGGAAAGGT
Right flanking sequence: Indices 5824 -- 6323
TTTTCACGTGCCTTGCCCGAGGCCCAGTGAAGGAGGGGGACCGAAGGGGGGACGTCGTGGTTCTT
GCAAAGCGTGTCCACAGTGCAGATGGCCGCCCACATCGGGACGCTAGGTGCATATCAACCTATGC
CTGTTGCAGACACGGCTTTTACCGTAAATGTCACATTAAGCCGTGCATGGTGATGGCTGCAACAG
TCGCGAGTCTTAACGGGTGGATGTAGAAGAAGGGTTAGATGTGGTAGTTAGGTGATTTGGGACAA
GGGCCACGTGTGGGGGGGCTCGACTTGCCTGGTCGTGTGAAGGTAACAATGGTCTGGTGTCTGAG
CCACTGTGGCTTGTGATTAGTAGGGCTGGTGGGGCATTAGAGGTTGTAGTAAAAGGGGTGGATTA
TGAAAGAAGCTGGGGGGATGGGAGAAGCTGAGAAACGAGAGCTGGGAGAAATGTGAGTTTGAGAG
ACCGGGAGACAAGACAAGCATGGACAAAGTACAGAAAACGAGCCA
Found at i:6668 original size:14 final size:14
Alignment explanation
Indices: 6649--6702 Score: 81
Period size: 14 Copynumber: 3.9 Consensus size: 14
6639 ACGACAAACC
* *
6649 ACCACTGCTACAAA
1 ACCACTACTACAGA
6663 ACCACTACTACAGA
1 ACCACTACTACAGA
6677 ACCACTACTACAGA
1 ACCACTACTACAGA
*
6691 ACCACTATTACA
1 ACCACTACTACA
6703 CGGTTCACCA
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
14 37 1.00
ACGTcount: A:0.43, C:0.35, G:0.06, T:0.17
Consensus pattern (14 bp):
ACCACTACTACAGA
Left flanking sequence: Indices 6149 -- 6648
CCACTGTGGCTTGTGATTAGTAGGGCTGGTGGGGCATTAGAGGTTGTAGTAAAAGGGGTGGATTA
TGAAAGAAGCTGGGGGGATGGGAGAAGCTGAGAAACGAGAGCTGGGAGAAATGTGAGTTTGAGAG
ACCGGGAGACAAGACAAGCATGGACAAAGTACAGAAAACGAGCCAATTAAGTGGGAATTAAGGCA
ACCAAGTTCAGCCGTAGATAACAACTCGGTGTGTTACTTAATCAATCACCTACACCCTCGTCGCT
AAAACACCTATCTATAGTTGTTATTGGTGGCTTATGTACACTTAGGAGTAGGTCTATCACATGTG
TTAGCCCGACGAAGGTGTCGGAATTCCGGGATTGCTATCCAATTTGTAGAACTAGTATATCCAAA
TTTCGAAATTATCATGGAGAGAGGTTGACTCTTGGGACCACAATCTGATCTGTTTGGCACTGTAG
CCGTGCCGATCTGAGACCTCTATCCATGATTCAGAACGACAAACC
Right flanking sequence: Indices 6703 -- 7202
CGGTTCACCACTGCTACAAAACCACCCTGTATCCACCACTGTTATCCTTACTCTCTACAAACTAC
CGTCACGTAAGGTCGCACCACTCATCTCCTGGAACCTAGCTCGATTTGTCTCATAATCCCCTCTC
GATCAAACATGTACTGGACTTAATCAAAATATAGCAAGTGGTAGAAGGCCAAACACCAAAAGGGT
TCGACAAATGAAGGGCACGCGGCCTCCACTATCCATAACCAATGGTGTCACCACGCCTGGCGTTT
GGGTTGCGTCTTGTAAGGAAACTGTCTTCACAGTCTGATCAAAGGTCGGCCCAACAACCAGGTCA
GGGGCTTCTCCCTCGGGTACATTCTCATCTGGCTGGTCTTCTGGATGGTCTGAAGGGTCTTCGGA
ATGGTCTTCGGAATCTTCTGCTTGTGTGGTTGGCTGCCCGTCATTGAGCACTTCAGTCGCGACCA
ATGTGCGGGTCAAAGTGACCCACACGTCGTTATCGTTGGTCACCA
Found at i:7422 original size:12 final size:12
Alignment explanation
Indices: 7405--7482 Score: 99
Period size: 12 Copynumber: 6.8 Consensus size: 12
7395 CATCTAATGT
7405 TGTCTCGACGGG
1 TGTCTCGACGGG
7417 TGTCTCGAC-GG
1 TGTCTCGACGGG
7428 -GT-TCGACGGG
1 TGTCTCGACGGG
*
7438 TGTCTCGATGGG
1 TGTCTCGACGGG
*
7450 TGTCTCAACGGG
1 TGTCTCGACGGG
* *
7462 TGGCTCAACGGG
1 TGTCTCGACGGG
7474 TGTCTCGAC
1 TGTCTCGAC
7483 TCCATCATCA
Statistics
Matches: 57, Mismatches: 6, Indels: 6
0.83 0.09 0.09
Matches are distributed among these distances:
9 5 0.09
10 4 0.07
11 4 0.07
12 44 0.77
ACGTcount: A:0.12, C:0.24, G:0.38, T:0.26
Consensus pattern (12 bp):
TGTCTCGACGGG
Left flanking sequence: Indices 6905 -- 7404
ATGAAGGGCACGCGGCCTCCACTATCCATAACCAATGGTGTCACCACGCCTGGCGTTTGGGTTGC
GTCTTGTAAGGAAACTGTCTTCACAGTCTGATCAAAGGTCGGCCCAACAACCAGGTCAGGGGCTT
CTCCCTCGGGTACATTCTCATCTGGCTGGTCTTCTGGATGGTCTGAAGGGTCTTCGGAATGGTCT
TCGGAATCTTCTGCTTGTGTGGTTGGCTGCCCGTCATTGAGCACTTCAGTCGCGACCAATGTGCG
GGTCAAAGTGACCCACACGTCGTTATCGTTGGTCACCACGACCTGGCCGTAGACAGTGGTGGGTT
GACCATCGGGCCCCGTTGTCTCGTAAACCGTATTGTACTCCGTTGGAGCTGGTTGGCCGTCGCCG
GCTCCCGTTGGGTCTGGCTGTTGGGGAGTAGTAGCTATGGGGGGCCCATACTCTGTTGCGTCCAT
CACAGATTCTGTGGCTGCACTTTCGAACTCAGGGTCATCTAATGT
Right flanking sequence: Indices 7483 -- 7982
TCCATCATCAGTCGGTTCAGCATTGGTGCCTGTCGGGAACACCGACGTGTACGTGGTCACTGCGC
CATCCTCGTCGGTAGTGACTCCCACTATCCCGGTGTCGGTGTGGACGTGGCCGTCTTCGTCTGTC
CACGTCGTGGTGTAGGTGAACCCAGGTTCTGGGAACTCCGACGTGGTTGTTGCCCAGCCTTCGGG
ACCACTGGTGACAATCACCACTCCCGAGTCTGTATCCACGTTGCCTTGGTCGTCGGTGGTGACCC
AGGTTGAAGTGTAAGTGGTGGGAGCAGGAGGAGTCGTTGGCTCTGGGAACACCGAGGTGGTGGTT
ACTTCCTGGCCGTTCTCGTCAGTGGTTACAATTACCACGCCAGACCCAGTGCCTTCGTTGTCTGT
CCAGGTGGTGGTATACGTCGTGAACCCAGGTGGCTCTGGGAACACCGACGTGGTTGTAACTTCCT
GACCGTCCTCGTCAGTGGTCACAATAACCACGCCAGAATCAGTGA
Found at i:7433 original size:21 final size:21
Alignment explanation
Indices: 7409--7450 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
7399 TAATGTTGTC
7409 TCGACGGGTGTCTCGACGGGT
1 TCGACGGGTGTCTCGACGGGT
*
7430 TCGACGGGTGTCTCGATGGGT
1 TCGACGGGTGTCTCGACGGGT
7451 GTCTCAACGG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.10, C:0.21, G:0.43, T:0.26
Consensus pattern (21 bp):
TCGACGGGTGTCTCGACGGGT
Left flanking sequence: Indices 6909 -- 7408
AGGGCACGCGGCCTCCACTATCCATAACCAATGGTGTCACCACGCCTGGCGTTTGGGTTGCGTCT
TGTAAGGAAACTGTCTTCACAGTCTGATCAAAGGTCGGCCCAACAACCAGGTCAGGGGCTTCTCC
CTCGGGTACATTCTCATCTGGCTGGTCTTCTGGATGGTCTGAAGGGTCTTCGGAATGGTCTTCGG
AATCTTCTGCTTGTGTGGTTGGCTGCCCGTCATTGAGCACTTCAGTCGCGACCAATGTGCGGGTC
AAAGTGACCCACACGTCGTTATCGTTGGTCACCACGACCTGGCCGTAGACAGTGGTGGGTTGACC
ATCGGGCCCCGTTGTCTCGTAAACCGTATTGTACTCCGTTGGAGCTGGTTGGCCGTCGCCGGCTC
CCGTTGGGTCTGGCTGTTGGGGAGTAGTAGCTATGGGGGGCCCATACTCTGTTGCGTCCATCACA
GATTCTGTGGCTGCACTTTCGAACTCAGGGTCATCTAATGTTGTC
Right flanking sequence: Indices 7451 -- 7950
GTCTCAACGGGTGGCTCAACGGGTGTCTCGACTCCATCATCAGTCGGTTCAGCATTGGTGCCTGT
CGGGAACACCGACGTGTACGTGGTCACTGCGCCATCCTCGTCGGTAGTGACTCCCACTATCCCGG
TGTCGGTGTGGACGTGGCCGTCTTCGTCTGTCCACGTCGTGGTGTAGGTGAACCCAGGTTCTGGG
AACTCCGACGTGGTTGTTGCCCAGCCTTCGGGACCACTGGTGACAATCACCACTCCCGAGTCTGT
ATCCACGTTGCCTTGGTCGTCGGTGGTGACCCAGGTTGAAGTGTAAGTGGTGGGAGCAGGAGGAG
TCGTTGGCTCTGGGAACACCGAGGTGGTGGTTACTTCCTGGCCGTTCTCGTCAGTGGTTACAATT
ACCACGCCAGACCCAGTGCCTTCGTTGTCTGTCCAGGTGGTGGTATACGTCGTGAACCCAGGTGG
CTCTGGGAACACCGACGTGGTTGTAACTTCCTGACCGTCCTCGTC
Found at i:7451 original size:33 final size:34
Alignment explanation
Indices: 7405--7482 Score: 104
Period size: 33 Copynumber: 2.3 Consensus size: 34
7395 CATCTAATGT
* *
7405 TGTCTCGACGGGTGTCTCGACGGGT-TCGACGGG
1 TGTCTCGACGGGTGTCTCAACGGGTGTCAACGGG
*
7438 TGTCTCGATGGGTGTCTCAACGGGTGGCTCAACGGG
1 TGTCTCGACGGGTGTCTCAACGGGT-G-TCAACGGG
7474 TGTCTCGAC
1 TGTCTCGAC
7483 TCCATCATCA
Statistics
Matches: 38, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
33 23 0.61
36 15 0.39
ACGTcount: A:0.12, C:0.24, G:0.38, T:0.26
Consensus pattern (34 bp):
TGTCTCGACGGGTGTCTCAACGGGTGTCAACGGG
Left flanking sequence: Indices 6905 -- 7404
ATGAAGGGCACGCGGCCTCCACTATCCATAACCAATGGTGTCACCACGCCTGGCGTTTGGGTTGC
GTCTTGTAAGGAAACTGTCTTCACAGTCTGATCAAAGGTCGGCCCAACAACCAGGTCAGGGGCTT
CTCCCTCGGGTACATTCTCATCTGGCTGGTCTTCTGGATGGTCTGAAGGGTCTTCGGAATGGTCT
TCGGAATCTTCTGCTTGTGTGGTTGGCTGCCCGTCATTGAGCACTTCAGTCGCGACCAATGTGCG
GGTCAAAGTGACCCACACGTCGTTATCGTTGGTCACCACGACCTGGCCGTAGACAGTGGTGGGTT
GACCATCGGGCCCCGTTGTCTCGTAAACCGTATTGTACTCCGTTGGAGCTGGTTGGCCGTCGCCG
GCTCCCGTTGGGTCTGGCTGTTGGGGAGTAGTAGCTATGGGGGGCCCATACTCTGTTGCGTCCAT
CACAGATTCTGTGGCTGCACTTTCGAACTCAGGGTCATCTAATGT
Right flanking sequence: Indices 7483 -- 7982
TCCATCATCAGTCGGTTCAGCATTGGTGCCTGTCGGGAACACCGACGTGTACGTGGTCACTGCGC
CATCCTCGTCGGTAGTGACTCCCACTATCCCGGTGTCGGTGTGGACGTGGCCGTCTTCGTCTGTC
CACGTCGTGGTGTAGGTGAACCCAGGTTCTGGGAACTCCGACGTGGTTGTTGCCCAGCCTTCGGG
ACCACTGGTGACAATCACCACTCCCGAGTCTGTATCCACGTTGCCTTGGTCGTCGGTGGTGACCC
AGGTTGAAGTGTAAGTGGTGGGAGCAGGAGGAGTCGTTGGCTCTGGGAACACCGAGGTGGTGGTT
ACTTCCTGGCCGTTCTCGTCAGTGGTTACAATTACCACGCCAGACCCAGTGCCTTCGTTGTCTGT
CCAGGTGGTGGTATACGTCGTGAACCCAGGTGGCTCTGGGAACACCGACGTGGTTGTAACTTCCT
GACCGTCCTCGTCAGTGGTCACAATAACCACGCCAGAATCAGTGA
Found at i:8061 original size:126 final size:126
Alignment explanation
Indices: 7780--8181 Score: 522
Period size: 126 Copynumber: 3.2 Consensus size: 126
7770 GAGGAGTCGT
*
7780 TGGCTCTGGGAACACCGAGGTGGTGGTTACTTCCTGGCCGTTCTCGTCAGTGGTTACAATTACCA
1 TGGCTCTGGGAACACCGAGGTGGTGGTTACTTCCTGGCCGTTCTCGTCAGTGGTTACAATAACCA
** * * ** *
7845 CGCCAGACCCAGTG---CCTTCGTTGTCTGTCCAGGTGGTGGTATACGTCGTGAACCCAGG
66 CGCCAGAATCAGTGACTCCCTCATCATCTGTCCACGTGGTGGTATACGTCGTGAACCCAGG
* * * * * *
7903 TGGCTCTGGGAACACCGACGTGGTTGTAACTTCCTGACCGTCCTCGTCAGTGGTCACAATAACCA
1 TGGCTCTGGGAACACCGAGGTGGTGGTTACTTCCTGGCCGTTCTCGTCAGTGGTTACAATAACCA
* * *
7968 CGCCAGAATCAGTGACTCCCTCATCATCTGTCCACGTGGTGGTAAACATCGTAAACCCAGG
66 CGCCAGAATCAGTGACTCCCTCATCATCTGTCCACGTGGTGGTATACGTCGTGAACCCAGG
* * ** * * * *
8029 TAGCTCTGGGAATATTGAGGTAGTGGTTACTTCCTGGCCATTCTCGTCGGTGGTTACAATCACCA
1 TGGCTCTGGGAACACCGAGGTGGTGGTTACTTCCTGGCCGTTCTCGTCAGTGGTTACAATAACCA
* *
8094 CACCAGAATCCGTGACTCCCTCATCATCTGTCCACGTGGTGGTATACGTCGTGAACCCAGG
66 CGCCAGAATCAGTGACTCCCTCATCATCTGTCCACGTGGTGGTATACGTCGTGAACCCAGG
* *
8155 TGGCTCTGGGAACACCGACGTAGTGGT
1 TGGCTCTGGGAACACCGAGGTGGTGGT
8182 GATCAACTGT
Statistics
Matches: 235, Mismatches: 41, Indels: 3
0.84 0.15 0.01
Matches are distributed among these distances:
123 70 0.30
126 165 0.70
ACGTcount: A:0.20, C:0.28, G:0.27, T:0.26
Consensus pattern (126 bp):
TGGCTCTGGGAACACCGAGGTGGTGGTTACTTCCTGGCCGTTCTCGTCAGTGGTTACAATAACCA
CGCCAGAATCAGTGACTCCCTCATCATCTGTCCACGTGGTGGTATACGTCGTGAACCCAGG
Left flanking sequence: Indices 7280 -- 7779
GGTTGGCCGTCGCCGGCTCCCGTTGGGTCTGGCTGTTGGGGAGTAGTAGCTATGGGGGGCCCATA
CTCTGTTGCGTCCATCACAGATTCTGTGGCTGCACTTTCGAACTCAGGGTCATCTAATGTTGTCT
CGACGGGTGTCTCGACGGGTTCGACGGGTGTCTCGATGGGTGTCTCAACGGGTGGCTCAACGGGT
GTCTCGACTCCATCATCAGTCGGTTCAGCATTGGTGCCTGTCGGGAACACCGACGTGTACGTGGT
CACTGCGCCATCCTCGTCGGTAGTGACTCCCACTATCCCGGTGTCGGTGTGGACGTGGCCGTCTT
CGTCTGTCCACGTCGTGGTGTAGGTGAACCCAGGTTCTGGGAACTCCGACGTGGTTGTTGCCCAG
CCTTCGGGACCACTGGTGACAATCACCACTCCCGAGTCTGTATCCACGTTGCCTTGGTCGTCGGT
GGTGACCCAGGTTGAAGTGTAAGTGGTGGGAGCAGGAGGAGTCGT
Right flanking sequence: Indices 8182 -- 8681
GATCAACTGTCCATCCTCATCCGTGGTCACGATGACCACACCAGAATCGGTGACCCCCCCATCTG
TGGTCCAGGTTGTGGTATACTCTGTGCATTCCGGACACTCGTCGCCAGGCGGCCGTGGGAACAAC
GATGTCTGCGTCACTAACTCGCCGTTCTCGTCCGTGGTCACCACTATGACCCCGGAGTCAGTCGC
AGTGACGCCTTCTTCGTCGGTCGTCCACGTTGAAGTGAACTCTGTGCACTCGGGACACTCTCTGG
GGAACATTGACGTGGTGGTGGTGAGCTGGCCGCTGTCGTCGGTGGTCACGATCACCACACCAGAG
TCTGTCTGCGTCACCCCTTCGTCGTCCGTAGTCCAGGTAGTGGTGAACTCTGTGCACTCGGGACA
CTCTGGTGTTGGGAACACCGACGTTGTTGTACCGAGCTGGCCGTCTTCGTCGGTCGTCAACTCGA
CGACACCGGACCCAGTCACAGTCTCGCCGTCCTCTCCTGTCGTGG
Found at i:8208 original size:126 final size:125
Alignment explanation
Indices: 7780--8266 Score: 462
Period size: 126 Copynumber: 3.9 Consensus size: 125
7770 GAGGAGTCGT
* * * * * * * *
7780 TGGCTCTGGGAACACCGAGGTGGTGGTTACTTCCTGGCCGTTCTCGTCAGTGGTTACAATTACCA
1 TGGCTCTGGGAACACCGACGTAGTGGTAAC-TCCTGACCATCCTCGTCAGTGGTCACAATAACCA
* ** * * ** *
7845 CGCCAGACCCAGTG---CCTTCGTTGTCTGTCCAGGTGGTGGTATACGTCGTGAACCCAGG
65 CACCAGAATCAGTGACTCCCTCATCATCTGTCCACGTGGTGGTATACGTCGTGAACCCAGG
* * *
7903 TGGCTCTGGGAACACCGACGTGGTTGTAACTTCCTGACCGTCCTCGTCAGTGGTCACAATAACCA
1 TGGCTCTGGGAACACCGACGTAGTGGTAAC-TCCTGACCATCCTCGTCAGTGGTCACAATAACCA
* * * *
7968 CGCCAGAATCAGTGACTCCCTCATCATCTGTCCACGTGGTGGTAAACATCGTAAACCCAGG
65 CACCAGAATCAGTGACTCCCTCATCATCTGTCCACGTGGTGGTATACGTCGTGAACCCAGG
* * ** * * * * * * *
8029 TAGCTCTGGGAATATTGAGGTAGTGGTTACTTCCTGGCCATTCTCGTCGGTGGTTACAATCACCA
1 TGGCTCTGGGAACACCGACGTAGTGGTAAC-TCCTGACCATCCTCGTCAGTGGTCACAATAACCA
*
8094 CACCAGAATCCGTGACTCCCTCATCATCTGTCCACGTGGTGGTATACGTCGTGAACCCAGG
65 CACCAGAATCAGTGACTCCCTCATCATCTGTCCACGTGGTGGTATACGTCGTGAACCCAGG
* * * * * *
8155 TGGCTCTGGGAACACCGACGTAGTGGTGA-TCAACTGTCCATCCTCATCCGTGGTCACGATGACC
1 TGGCTCTGGGAACACCGACGTAGTGGTAACTC--CTGACCATCCTCGTCAGTGGTCACAATAACC
* * * * * *
8219 ACACCAGAATCGGTGACCCCCCCATC-TGTGGTCCAGGTTGTGGTATAC
64 ACACCAGAATCAGTGACTCCCTCATCATCT-GTCCACGTGGTGGTATAC
8267 TCTGTGCATT
Statistics
Matches: 303, Mismatches: 55, Indels: 9
0.83 0.15 0.02
Matches are distributed among these distances:
123 70 0.23
124 2 0.01
125 2 0.01
126 229 0.76
ACGTcount: A:0.20, C:0.29, G:0.26, T:0.25
Consensus pattern (125 bp):
TGGCTCTGGGAACACCGACGTAGTGGTAACTCCTGACCATCCTCGTCAGTGGTCACAATAACCAC
ACCAGAATCAGTGACTCCCTCATCATCTGTCCACGTGGTGGTATACGTCGTGAACCCAGG
Left flanking sequence: Indices 7280 -- 7779
GGTTGGCCGTCGCCGGCTCCCGTTGGGTCTGGCTGTTGGGGAGTAGTAGCTATGGGGGGCCCATA
CTCTGTTGCGTCCATCACAGATTCTGTGGCTGCACTTTCGAACTCAGGGTCATCTAATGTTGTCT
CGACGGGTGTCTCGACGGGTTCGACGGGTGTCTCGATGGGTGTCTCAACGGGTGGCTCAACGGGT
GTCTCGACTCCATCATCAGTCGGTTCAGCATTGGTGCCTGTCGGGAACACCGACGTGTACGTGGT
CACTGCGCCATCCTCGTCGGTAGTGACTCCCACTATCCCGGTGTCGGTGTGGACGTGGCCGTCTT
CGTCTGTCCACGTCGTGGTGTAGGTGAACCCAGGTTCTGGGAACTCCGACGTGGTTGTTGCCCAG
CCTTCGGGACCACTGGTGACAATCACCACTCCCGAGTCTGTATCCACGTTGCCTTGGTCGTCGGT
GGTGACCCAGGTTGAAGTGTAAGTGGTGGGAGCAGGAGGAGTCGT
Right flanking sequence: Indices 8267 -- 8766
TCTGTGCATTCCGGACACTCGTCGCCAGGCGGCCGTGGGAACAACGATGTCTGCGTCACTAACTC
GCCGTTCTCGTCCGTGGTCACCACTATGACCCCGGAGTCAGTCGCAGTGACGCCTTCTTCGTCGG
TCGTCCACGTTGAAGTGAACTCTGTGCACTCGGGACACTCTCTGGGGAACATTGACGTGGTGGTG
GTGAGCTGGCCGCTGTCGTCGGTGGTCACGATCACCACACCAGAGTCTGTCTGCGTCACCCCTTC
GTCGTCCGTAGTCCAGGTAGTGGTGAACTCTGTGCACTCGGGACACTCTGGTGTTGGGAACACCG
ACGTTGTTGTACCGAGCTGGCCGTCTTCGTCGGTCGTCAACTCGACGACACCGGACCCAGTCACA
GTCTCGCCGTCCTCTCCTGTCGTGGTCCACGTGGTGGTGTACGTAGTGAGCCCGTCGTCCGGGAA
CAACGACGTCGTTGTCGTGACAGCACCGTCTGGGTCCGTAGTGAC
Found at i:8228 original size:252 final size:248
Alignment explanation
Indices: 7782--8244 Score: 606
Period size: 252 Copynumber: 1.8 Consensus size: 248
7772 GGAGTCGTTG
* * * *
7782 GCTCTGGGAACACCGAGGTGGTGGTTACTTCCTGGCCGTTCTCGTCAGTGGTTACAATTACCACG
1 GCTCTGGGAACACCGAGGTAGTGGTTACTTCCTGGCCATTCTCGTCAGTGGTTACAATCACCACA
* * ** *
7847 CCAGACCCAGTGCCTTCGTTGTCTGTCCAGGTGGTGGTATACGTCGTGAACCCAGGTGGCTCTGG
66 CCAGACCCAGTGCCCTCATCATCTGTCCACGTGGTGGTATACGTCGTGAACCCAGGTGGCTCTGG
* * * * *
7912 GAACACCGACGTGGTTGTAACTTCCTGACCGTCCTCGTCAGTGGTCACAATAACCACGCCAGAAT
131 GAACACCGACGTAGTGGTAAC-TCCTGACCATCCTCATCAGTGGTCACAATAACCACACCAGAAT
* *
7977 CAGTGACTCCCTCATCATCTGTCCACGTGGTGGTAAACATCGTAAACCCAGGTA
195 CAGTGACCCCCCCATCATCTGTCCACGTGGTGGTAAACATCGTAAACCCAGGTA
* ** *
8031 GCTCTGGGAATATTGAGGTAGTGGTTACTTCCTGGCCATTCTCGTCGGTGGTTACAATCACCACA
1 GCTCTGGGAACACCGAGGTAGTGGTTACTTCCTGGCCATTCTCGTCAGTGGTTACAATCACCACA
*
8096 CCAGAATCC-GTGACTCCCTCATCATCTGTCCACGTGGTGGTATACGTCGTGAACCCAGGTGGCT
66 CCAG-ACCCAGTG---CCCTCATCATCTGTCCACGTGGTGGTATACGTCGTGAACCCAGGTGGCT
* * * * *
8160 CTGGGAACACCGACGTAGTGGTGA-TCAACTGTCCATCCTCATCCGTGGTCACGATGACCACACC
127 CTGGGAACACCGACGTAGTGGTAACTC--CTGACCATCCTCATCAGTGGTCACAATAACCACACC
*
8224 AGAATCGGTGACCCCCCCATC
190 AGAATCAGTGACCCCCCCATC
8245 TGTGGTCCAG
Statistics
Matches: 181, Mismatches: 27, Indels: 9
0.83 0.12 0.04
Matches are distributed among these distances:
249 64 0.35
250 5 0.03
252 112 0.62
ACGTcount: A:0.21, C:0.29, G:0.25, T:0.25
Consensus pattern (248 bp):
GCTCTGGGAACACCGAGGTAGTGGTTACTTCCTGGCCATTCTCGTCAGTGGTTACAATCACCACA
CCAGACCCAGTGCCCTCATCATCTGTCCACGTGGTGGTATACGTCGTGAACCCAGGTGGCTCTGG
GAACACCGACGTAGTGGTAACTCCTGACCATCCTCATCAGTGGTCACAATAACCACACCAGAATC
AGTGACCCCCCCATCATCTGTCCACGTGGTGGTAAACATCGTAAACCCAGGTA
Left flanking sequence: Indices 7282 -- 7781
TTGGCCGTCGCCGGCTCCCGTTGGGTCTGGCTGTTGGGGAGTAGTAGCTATGGGGGGCCCATACT
CTGTTGCGTCCATCACAGATTCTGTGGCTGCACTTTCGAACTCAGGGTCATCTAATGTTGTCTCG
ACGGGTGTCTCGACGGGTTCGACGGGTGTCTCGATGGGTGTCTCAACGGGTGGCTCAACGGGTGT
CTCGACTCCATCATCAGTCGGTTCAGCATTGGTGCCTGTCGGGAACACCGACGTGTACGTGGTCA
CTGCGCCATCCTCGTCGGTAGTGACTCCCACTATCCCGGTGTCGGTGTGGACGTGGCCGTCTTCG
TCTGTCCACGTCGTGGTGTAGGTGAACCCAGGTTCTGGGAACTCCGACGTGGTTGTTGCCCAGCC
TTCGGGACCACTGGTGACAATCACCACTCCCGAGTCTGTATCCACGTTGCCTTGGTCGTCGGTGG
TGACCCAGGTTGAAGTGTAAGTGGTGGGAGCAGGAGGAGTCGTTG
Right flanking sequence: Indices 8245 -- 8744
TGTGGTCCAGGTTGTGGTATACTCTGTGCATTCCGGACACTCGTCGCCAGGCGGCCGTGGGAACA
ACGATGTCTGCGTCACTAACTCGCCGTTCTCGTCCGTGGTCACCACTATGACCCCGGAGTCAGTC
GCAGTGACGCCTTCTTCGTCGGTCGTCCACGTTGAAGTGAACTCTGTGCACTCGGGACACTCTCT
GGGGAACATTGACGTGGTGGTGGTGAGCTGGCCGCTGTCGTCGGTGGTCACGATCACCACACCAG
AGTCTGTCTGCGTCACCCCTTCGTCGTCCGTAGTCCAGGTAGTGGTGAACTCTGTGCACTCGGGA
CACTCTGGTGTTGGGAACACCGACGTTGTTGTACCGAGCTGGCCGTCTTCGTCGGTCGTCAACTC
GACGACACCGGACCCAGTCACAGTCTCGCCGTCCTCTCCTGTCGTGGTCCACGTGGTGGTGTACG
TAGTGAGCCCGTCGTCCGGGAACAACGACGTCGTTGTCGTGACAG
Found at i:9332 original size:144 final size:141
Alignment explanation
Indices: 9149--9552 Score: 402
Period size: 141 Copynumber: 2.8 Consensus size: 141
9139 GGTTGGGGAC
* * * * ** * * * *
9149 GGTTGGGGAAATAACGAAGTGGTGGTGGTCAATACGCCTTCTTCGTCTGTGGTCACCTCCACCAC
1 GGTTGGGGAAATAACGACGTAGTGGTGGTGAGTTGGCCTTCTTCGTCTGTCGTCACCACAACAAC
* * * * * *
9214 ACCTGACTCGGT-GAGGGTTTGA-CCC-CCCTCGTCCGTTGTCGTCCAGGTTGATGTGAATTCTG
66 ACCAGACTCGGTCG-CGG--TGATCCCTCCCTCGTCCGTAG-C--CCACGTAGAAGTGAATTCTG
9276 TACATTCATCGCACGTA
125 TACATTCATCGCACGTA
*
9293 GGTTGGGGAAATAACGACGTAGTGGTGGTGAGTTGGCCTTCTTCGTCTGTCGTCACCACAATAAC
1 GGTTGGGGAAATAACGACGTAGTGGTGGTGAGTTGGCCTTCTTCGTCTGTCGTCACCACAACAAC
* * * * * *
9358 CCCAGAGTCTGTCGCGGTGATCCCTTCTTCTTCCGTAGCCCACGTAGAAGTGAATTCTGTACATT
66 ACCAGACTCGGTCGCGGTGATCCCTCCCTCGTCCGTAGCCCACGTAGAAGTGAATTCTGTACATT
9423 CATCGCACGTA
131 CATCGCACGTA
** * * *
9434 GGCCGTGGAAACAACGACGTAGTGGTGGTGAGTTGGCCTTCTTCGTCTGTCGTCACCACAATAAC
1 GGTTGGGGAAATAACGACGTAGTGGTGGTGAGTTGGCCTTCTTCGTCTGTCGTCACCACAACAAC
* * * * * * *
9499 CCCAGAGTCTGTCGCGGTGATCCC-CTCTTCTTCCGTGGCCCACGTAGACGTGAA
66 ACCAGACTCGGTCGCGGTGATCCCTC-CCTCGTCCGTAGCCCACGTAGAAGTGAA
9553 CGTAGTGCAT
Statistics
Matches: 226, Mismatches: 30, Indels: 11
0.85 0.11 0.04
Matches are distributed among these distances:
141 145 0.64
142 3 0.01
143 4 0.02
144 73 0.32
145 1 0.00
ACGTcount: A:0.19, C:0.27, G:0.27, T:0.27
Consensus pattern (141 bp):
GGTTGGGGAAATAACGACGTAGTGGTGGTGAGTTGGCCTTCTTCGTCTGTCGTCACCACAACAAC
ACCAGACTCGGTCGCGGTGATCCCTCCCTCGTCCGTAGCCCACGTAGAAGTGAATTCTGTACATT
CATCGCACGTA
Left flanking sequence: Indices 8649 -- 9148
CAGTCACAGTCTCGCCGTCCTCTCCTGTCGTGGTCCACGTGGTGGTGTACGTAGTGAGCCCGTCG
TCCGGGAACAACGACGTCGTTGTCGTGACAGCACCGTCTGGGTCCGTAGTGACAATAACGACGCC
AGACTCCGTATCGGTCGTTCCATCGTCGTGAGTCGTTGTCCAAGTAGTTGTGAACGTGGTGTGCG
GGTCTGTGGGTTGTGGAAGCACCGACGTGGTGGTACTCAAAGCACCATCGGGGTCAGTTGTGACG
ATAACCACCCCAGAGTCTGTTTGTGTTGTTCCATCATCGTTGGTTGTGGTCCAGTCAGTGGTGAA
TTTCGTGCAATAAGGACATACGCCGGCCGCAGGGAACATGGACGTCGTGGTGACGAGCTCGCCTT
CTGGGTCGGTGGTGATGATTACGACCCCGGACTCCGTCTGAGGGCCGCCTTCACCGTCTGTGGTT
GTGAAGGTAGTTGTGAACTCAGTGCACTCAACACAGGTTGGGGAC
Right flanking sequence: Indices 9553 -- 10052
CGTAGTGCATTCGTCACAAGGCACCTCTTGGGGTGGCTCCAAAACAGGCGGGGGCGGTCTACAGT
TGTCAGCCCACTCAGCACCTTCGGGAACCGGCCCATCGTATAAAAGAAGAACATCCTCCAAGAAC
ATACCATCCTCTTCCCAGTCTCCAATTCTGAACAAAGACTCGTCGTAACCTGGGCCAATTTCTGC
CAATGTCTCACCATCAAAAGTGAGATGAAAAGTCAATTTTGAGCCGTCGTATTCAAAACTCTCAA
TCGGTTGGTCGGTCCGGAAAGCCTTTCCCTGACCATAACCACGCACTATTGTACGTTGGGGCTCA
TCAATGTCGGCACGGAGAAATACAAACCCAGTAGAGTCAGCATGAAATTGTATAGTGTGATCCAA
GTGGGAACCACTACCCTGGAAAACACCATCTCCAATAATGTGTATGCATCCAGAGCCCGCTAGCT
GGGACCAGGGCAAATAGAGGTGAGCATTGTCCAAGTAAATGTCGC
Found at i:9453 original size:141 final size:141
Alignment explanation
Indices: 9266--9552 Score: 511
Period size: 141 Copynumber: 2.0 Consensus size: 141
9256 CCAGGTTGAT
** *
9266 GTGAATTCTGTACATTCATCGCACGTAGGTTGGGGAAATAACGACGTAGTGGTGGTGAGTTGGCC
1 GTGAATTCTGTACATTCATCGCACGTAGGCCGGGGAAACAACGACGTAGTGGTGGTGAGTTGGCC
*
9331 TTCTTCGTCTGTCGTCACCACAATAACCCCAGAGTCTGTCGCGGTGATCCCTTCTTCTTCCGTAG
66 TTCTTCGTCTGTCGTCACCACAATAACCCCAGAGTCTGTCGCGGTGATCCCCTCTTCTTCCGTAG
9396 CCCACGTAGAA
131 CCCACGTAGAA
*
9407 GTGAATTCTGTACATTCATCGCACGTAGGCCGTGGAAACAACGACGTAGTGGTGGTGAGTTGGCC
1 GTGAATTCTGTACATTCATCGCACGTAGGCCGGGGAAACAACGACGTAGTGGTGGTGAGTTGGCC
*
9472 TTCTTCGTCTGTCGTCACCACAATAACCCCAGAGTCTGTCGCGGTGATCCCCTCTTCTTCCGTGG
66 TTCTTCGTCTGTCGTCACCACAATAACCCCAGAGTCTGTCGCGGTGATCCCCTCTTCTTCCGTAG
*
9537 CCCACGTAGAC
131 CCCACGTAGAA
9548 GTGAA
1 GTGAA
9553 CGTAGTGCAT
Statistics
Matches: 139, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
141 139 1.00
ACGTcount: A:0.20, C:0.27, G:0.26, T:0.27
Consensus pattern (141 bp):
GTGAATTCTGTACATTCATCGCACGTAGGCCGGGGAAACAACGACGTAGTGGTGGTGAGTTGGCC
TTCTTCGTCTGTCGTCACCACAATAACCCCAGAGTCTGTCGCGGTGATCCCCTCTTCTTCCGTAG
CCCACGTAGAA
Left flanking sequence: Indices 8766 -- 9265
CAATAACGACGCCAGACTCCGTATCGGTCGTTCCATCGTCGTGAGTCGTTGTCCAAGTAGTTGTG
AACGTGGTGTGCGGGTCTGTGGGTTGTGGAAGCACCGACGTGGTGGTACTCAAAGCACCATCGGG
GTCAGTTGTGACGATAACCACCCCAGAGTCTGTTTGTGTTGTTCCATCATCGTTGGTTGTGGTCC
AGTCAGTGGTGAATTTCGTGCAATAAGGACATACGCCGGCCGCAGGGAACATGGACGTCGTGGTG
ACGAGCTCGCCTTCTGGGTCGGTGGTGATGATTACGACCCCGGACTCCGTCTGAGGGCCGCCTTC
ACCGTCTGTGGTTGTGAAGGTAGTTGTGAACTCAGTGCACTCAACACAGGTTGGGGACGGTTGGG
GAAATAACGAAGTGGTGGTGGTCAATACGCCTTCTTCGTCTGTGGTCACCTCCACCACACCTGAC
TCGGTGAGGGTTTGACCCCCCTCGTCCGTTGTCGTCCAGGTTGAT
Right flanking sequence: Indices 9553 -- 10052
CGTAGTGCATTCGTCACAAGGCACCTCTTGGGGTGGCTCCAAAACAGGCGGGGGCGGTCTACAGT
TGTCAGCCCACTCAGCACCTTCGGGAACCGGCCCATCGTATAAAAGAAGAACATCCTCCAAGAAC
ATACCATCCTCTTCCCAGTCTCCAATTCTGAACAAAGACTCGTCGTAACCTGGGCCAATTTCTGC
CAATGTCTCACCATCAAAAGTGAGATGAAAAGTCAATTTTGAGCCGTCGTATTCAAAACTCTCAA
TCGGTTGGTCGGTCCGGAAAGCCTTTCCCTGACCATAACCACGCACTATTGTACGTTGGGGCTCA
TCAATGTCGGCACGGAGAAATACAAACCCAGTAGAGTCAGCATGAAATTGTATAGTGTGATCCAA
GTGGGAACCACTACCCTGGAAAACACCATCTCCAATAATGTGTATGCATCCAGAGCCCGCTAGCT
GGGACCAGGGCAAATAGAGGTGAGCATTGTCCAAGTAAATGTCGC
Found at i:11026 original size:14 final size:14
Alignment explanation
Indices: 11008--11061 Score: 81
Period size: 14 Copynumber: 3.9 Consensus size: 14
10998 ACCGATTTGG
* *
11008 ATCTGAGATGGCCG
1 ATCTGAGTTGGCCA
11022 ATCTGAGTTGGCCA
1 ATCTGAGTTGGCCA
11036 ATCTGAGTTGGCCA
1 ATCTGAGTTGGCCA
*
11050 ATCTAAGTTGGC
1 ATCTGAGTTGGC
11062 TCAAAAGTAT
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
14 37 1.00
ACGTcount: A:0.22, C:0.20, G:0.30, T:0.28
Consensus pattern (14 bp):
ATCTGAGTTGGCCA
Left flanking sequence: Indices 10508 -- 11007
ATTGCACCAGCCGTTAAAATGAGTAAAGACCACACGTAATTGTGTAGTATCATCGCGTTAAAAGG
TCTGCTTCGAACTTCGACGGCTGGGTTGTCTTTATAGAATTGTTGGTGTATTCCAGGTTTACGTG
ACTAGCAGCCTGACTTGAGGGTCGTCATTACTGGAAACTATTCAACTGACAGGCTCTATAAGCCT
CTTAATTCACTTTCTTTAGCCCAAACAAATCTTTGTATCAGCCAACGCAGACGTACGTGAGTCAG
GAGCCCAGCAAAGACAGCCGTGGAGAAGCGATGTAATTCCATTGGTCCGCCCGGCTCTAACCCAC
ACCCGAGCGCTACAGCTTTGAGGTCCGCGTCGGATTTATCGAGGTCCGATTATGCTCAAAAGGCA
CAAATTCAGATATCAGGTGGTGATCTGCTGATTCCCCCAGACCCTCAATCCTGCATTGCTAATTC
AGAGTAACAGGCTTTAGCGAGATCAATGAGCTCAAACCGATTTGG
Right flanking sequence: Indices 11062 -- 11561
TCAAAAGTATAGAGTATAGCTGGGTAACATTTCGTCACCTAACCCAGAACAAGAGACGTCACGAC
GTCACGATGTCACGACGTCACTATAATGCAGATACGATCACGGAAGATCTGAAACAAGATGCTAA
TCGTTAAAATCAGCACCATAGGACGGTTTCACCCCTGGTCTAGCCCAAATGACCGTCAGTGGCGG
TTGACTGCTCAATCCTTCCCCACTGTGGCTGGTCAGCTCAATTCTTCCCCACTGTGGCTGATCAA
CTCTTGCTCTCGGGTAGATCAGCTCAATTACCCTCAGATCAGCTCAATTCCCCCTGGTAGATCAG
CTCAATTCTCCTCGCGGTAGAACAGCTCAATTCTTCCCCTTCAGCTCAATTCTTCTCCTCTGTGG
CAAACCAGCTCAATTCTTCTTCTCTGTGGCAAACCATCTCAATTCTTCCCTCTAGCAGCTCAATT
CTTCCCTCAGGCAGCTCATTCTTCCCCTCTGGCAGCTCAGCCCAT
Found at i:11129 original size:8 final size:8
Alignment explanation
Indices: 11116--11147 Score: 55
Period size: 8 Copynumber: 4.0 Consensus size: 8
11106 CAGAACAAGA
11116 GACGTCAC
1 GACGTCAC
11124 GACGTCAC
1 GACGTCAC
*
11132 GATGTCAC
1 GACGTCAC
11140 GACGTCAC
1 GACGTCAC
11148 TATAATGCAG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
8 22 1.00
ACGTcount: A:0.25, C:0.34, G:0.25, T:0.16
Consensus pattern (8 bp):
GACGTCAC
Left flanking sequence: Indices 10616 -- 11115
TGGTGTATTCCAGGTTTACGTGACTAGCAGCCTGACTTGAGGGTCGTCATTACTGGAAACTATTC
AACTGACAGGCTCTATAAGCCTCTTAATTCACTTTCTTTAGCCCAAACAAATCTTTGTATCAGCC
AACGCAGACGTACGTGAGTCAGGAGCCCAGCAAAGACAGCCGTGGAGAAGCGATGTAATTCCATT
GGTCCGCCCGGCTCTAACCCACACCCGAGCGCTACAGCTTTGAGGTCCGCGTCGGATTTATCGAG
GTCCGATTATGCTCAAAAGGCACAAATTCAGATATCAGGTGGTGATCTGCTGATTCCCCCAGACC
CTCAATCCTGCATTGCTAATTCAGAGTAACAGGCTTTAGCGAGATCAATGAGCTCAAACCGATTT
GGATCTGAGATGGCCGATCTGAGTTGGCCAATCTGAGTTGGCCAATCTAAGTTGGCTCAAAAGTA
TAGAGTATAGCTGGGTAACATTTCGTCACCTAACCCAGAACAAGA
Right flanking sequence: Indices 11148 -- 11647
TATAATGCAGATACGATCACGGAAGATCTGAAACAAGATGCTAATCGTTAAAATCAGCACCATAG
GACGGTTTCACCCCTGGTCTAGCCCAAATGACCGTCAGTGGCGGTTGACTGCTCAATCCTTCCCC
ACTGTGGCTGGTCAGCTCAATTCTTCCCCACTGTGGCTGATCAACTCTTGCTCTCGGGTAGATCA
GCTCAATTACCCTCAGATCAGCTCAATTCCCCCTGGTAGATCAGCTCAATTCTCCTCGCGGTAGA
ACAGCTCAATTCTTCCCCTTCAGCTCAATTCTTCTCCTCTGTGGCAAACCAGCTCAATTCTTCTT
CTCTGTGGCAAACCATCTCAATTCTTCCCTCTAGCAGCTCAATTCTTCCCTCAGGCAGCTCATTC
TTCCCCTCTGGCAGCTCAGCCCATTCTTCCCCTCCGTTCTTCACATCTCAACACACGCCTTGCAT
TTATTCCGTGTATTCCCTACTTTTTCATGAGTCCCTGTACCGACG
Found at i:11362 original size:20 final size:22
Alignment explanation
Indices: 11337--11394 Score: 75
Period size: 23 Copynumber: 2.7 Consensus size: 22
11327 GCTCTCGGGT
11337 AGATCAGCTCAATT-ACCCT-C
1 AGATCAGCTCAATTCACCCTGC
* *
11357 AGATCAGCTCAATTCCCCCTGGT
1 AGATCAGCTCAATTCACCCT-GC
11380 AGATCAGCTCAATTC
1 AGATCAGCTCAATTC
11395 TCCTCGCGGT
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
20 14 0.42
21 4 0.12
23 15 0.45
ACGTcount: A:0.28, C:0.33, G:0.14, T:0.26
Consensus pattern (22 bp):
AGATCAGCTCAATTCACCCTGC
Left flanking sequence: Indices 10837 -- 11336
GAGCGCTACAGCTTTGAGGTCCGCGTCGGATTTATCGAGGTCCGATTATGCTCAAAAGGCACAAA
TTCAGATATCAGGTGGTGATCTGCTGATTCCCCCAGACCCTCAATCCTGCATTGCTAATTCAGAG
TAACAGGCTTTAGCGAGATCAATGAGCTCAAACCGATTTGGATCTGAGATGGCCGATCTGAGTTG
GCCAATCTGAGTTGGCCAATCTAAGTTGGCTCAAAAGTATAGAGTATAGCTGGGTAACATTTCGT
CACCTAACCCAGAACAAGAGACGTCACGACGTCACGATGTCACGACGTCACTATAATGCAGATAC
GATCACGGAAGATCTGAAACAAGATGCTAATCGTTAAAATCAGCACCATAGGACGGTTTCACCCC
TGGTCTAGCCCAAATGACCGTCAGTGGCGGTTGACTGCTCAATCCTTCCCCACTGTGGCTGGTCA
GCTCAATTCTTCCCCACTGTGGCTGATCAACTCTTGCTCTCGGGT
Right flanking sequence: Indices 11395 -- 11894
TCCTCGCGGTAGAACAGCTCAATTCTTCCCCTTCAGCTCAATTCTTCTCCTCTGTGGCAAACCAG
CTCAATTCTTCTTCTCTGTGGCAAACCATCTCAATTCTTCCCTCTAGCAGCTCAATTCTTCCCTC
AGGCAGCTCATTCTTCCCCTCTGGCAGCTCAGCCCATTCTTCCCCTCCGTTCTTCACATCTCAAC
ACACGCCTTGCATTTATTCCGTGTATTCCCTACTTTTTCATGAGTCCCTGTACCGACGGCATTCT
GCGAGAGAACCGCCGCATCAAATTGTCCTTGTGGGGCGAGCTGCTATCGAGACTCGGGGTCCCGC
TGGTGTTGGACCCGCTCCGGTGCCGCGTGGGCGACCCAGAGATCCGGCTCGAGCGCGACAGGTTG
CGGTGGGACCCCAACGGCGGGGTGGCAGCCCTGGGCAGCTCGCCGTCGAAATCCCCCCCGTAGGC
ACTCGTGGCGAGTATCAGCCCGCGGGTGTGGCTCTTCTCGGGCGA
Found at i:11412 original size:25 final size:24
Alignment explanation
Indices: 11361--11426 Score: 82
Period size: 25 Copynumber: 2.7 Consensus size: 24
11351 ACCCTCAGAT
*
11361 CAGCTCAATTC-CCCCTGGTAGAT
1 CAGCTCAATTCTCCCCTGGTAGAA
11384 CAGCTCAATTCTCCTCGC-GGTAGAA
1 CAGCTCAATTCTCC-C-CTGGTAGAA
11409 CAGCTCAATTCTTCCCCT
1 CAGCTCAATTC-TCCCCT
11427 TCAGCTCAAT
Statistics
Matches: 37, Mismatches: 1, Indels: 8
0.80 0.02 0.17
Matches are distributed among these distances:
23 11 0.30
24 3 0.08
25 19 0.51
26 4 0.11
ACGTcount: A:0.21, C:0.36, G:0.15, T:0.27
Consensus pattern (24 bp):
CAGCTCAATTCTCCCCTGGTAGAA
Left flanking sequence: Indices 10861 -- 11360
GTCGGATTTATCGAGGTCCGATTATGCTCAAAAGGCACAAATTCAGATATCAGGTGGTGATCTGC
TGATTCCCCCAGACCCTCAATCCTGCATTGCTAATTCAGAGTAACAGGCTTTAGCGAGATCAATG
AGCTCAAACCGATTTGGATCTGAGATGGCCGATCTGAGTTGGCCAATCTGAGTTGGCCAATCTAA
GTTGGCTCAAAAGTATAGAGTATAGCTGGGTAACATTTCGTCACCTAACCCAGAACAAGAGACGT
CACGACGTCACGATGTCACGACGTCACTATAATGCAGATACGATCACGGAAGATCTGAAACAAGA
TGCTAATCGTTAAAATCAGCACCATAGGACGGTTTCACCCCTGGTCTAGCCCAAATGACCGTCAG
TGGCGGTTGACTGCTCAATCCTTCCCCACTGTGGCTGGTCAGCTCAATTCTTCCCCACTGTGGCT
GATCAACTCTTGCTCTCGGGTAGATCAGCTCAATTACCCTCAGAT
Right flanking sequence: Indices 11427 -- 11926
TCAGCTCAATTCTTCTCCTCTGTGGCAAACCAGCTCAATTCTTCTTCTCTGTGGCAAACCATCTC
AATTCTTCCCTCTAGCAGCTCAATTCTTCCCTCAGGCAGCTCATTCTTCCCCTCTGGCAGCTCAG
CCCATTCTTCCCCTCCGTTCTTCACATCTCAACACACGCCTTGCATTTATTCCGTGTATTCCCTA
CTTTTTCATGAGTCCCTGTACCGACGGCATTCTGCGAGAGAACCGCCGCATCAAATTGTCCTTGT
GGGGCGAGCTGCTATCGAGACTCGGGGTCCCGCTGGTGTTGGACCCGCTCCGGTGCCGCGTGGGC
GACCCAGAGATCCGGCTCGAGCGCGACAGGTTGCGGTGGGACCCCAACGGCGGGGTGGCAGCCCT
GGGCAGCTCGCCGTCGAAATCCCCCCCGTAGGCACTCGTGGCGAGTATCAGCCCGCGGGTGTGGC
TCTTCTCGGGCGACGGCAGCTCCTTCGGGGGCCGTGGCTGGAGCG
Found at i:11470 original size:29 final size:29
Alignment explanation
Indices: 11428--11504 Score: 129
Period size: 29 Copynumber: 2.7 Consensus size: 29
11418 TCTTCCCCTT
11428 CAGCTCAATTCTTCTCCTCTGTGGCAAAC
1 CAGCTCAATTCTTCTCCTCTGTGGCAAAC
*
11457 CAGCTCAATTCTTCTTCTCTGTGGCAAAC
1 CAGCTCAATTCTTCTCCTCTGTGGCAAAC
*
11486 CATCTCAATTCTTC-CCTCT
1 CAGCTCAATTCTTCTCCTCT
11505 AGCAGCTCAA
Statistics
Matches: 45, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
28 4 0.09
29 41 0.91
ACGTcount: A:0.19, C:0.35, G:0.10, T:0.35
Consensus pattern (29 bp):
CAGCTCAATTCTTCTCCTCTGTGGCAAAC
Left flanking sequence: Indices 10928 -- 11427
ATTCCCCCAGACCCTCAATCCTGCATTGCTAATTCAGAGTAACAGGCTTTAGCGAGATCAATGAG
CTCAAACCGATTTGGATCTGAGATGGCCGATCTGAGTTGGCCAATCTGAGTTGGCCAATCTAAGT
TGGCTCAAAAGTATAGAGTATAGCTGGGTAACATTTCGTCACCTAACCCAGAACAAGAGACGTCA
CGACGTCACGATGTCACGACGTCACTATAATGCAGATACGATCACGGAAGATCTGAAACAAGATG
CTAATCGTTAAAATCAGCACCATAGGACGGTTTCACCCCTGGTCTAGCCCAAATGACCGTCAGTG
GCGGTTGACTGCTCAATCCTTCCCCACTGTGGCTGGTCAGCTCAATTCTTCCCCACTGTGGCTGA
TCAACTCTTGCTCTCGGGTAGATCAGCTCAATTACCCTCAGATCAGCTCAATTCCCCCTGGTAGA
TCAGCTCAATTCTCCTCGCGGTAGAACAGCTCAATTCTTCCCCTT
Right flanking sequence: Indices 11505 -- 12004
AGCAGCTCAATTCTTCCCTCAGGCAGCTCATTCTTCCCCTCTGGCAGCTCAGCCCATTCTTCCCC
TCCGTTCTTCACATCTCAACACACGCCTTGCATTTATTCCGTGTATTCCCTACTTTTTCATGAGT
CCCTGTACCGACGGCATTCTGCGAGAGAACCGCCGCATCAAATTGTCCTTGTGGGGCGAGCTGCT
ATCGAGACTCGGGGTCCCGCTGGTGTTGGACCCGCTCCGGTGCCGCGTGGGCGACCCAGAGATCC
GGCTCGAGCGCGACAGGTTGCGGTGGGACCCCAACGGCGGGGTGGCAGCCCTGGGCAGCTCGCCG
TCGAAATCCCCCCCGTAGGCACTCGTGGCGAGTATCAGCCCGCGGGTGTGGCTCTTCTCGGGCGA
CGGCAGCTCCTTCGGGGGCCGTGGCTGGAGCGCGGGCGAGCTCACGAGGTGCTTGCGCTTGGACA
ACCGGAACACCGTCTGCACGGGCTTCAAGTAGATCAGGGCCAACG
Found at i:11513 original size:21 final size:21
Alignment explanation
Indices: 11489--11555 Score: 93
Period size: 21 Copynumber: 3.2 Consensus size: 21
11479 GGCAAACCAT
11489 CTCAATTCTTCCCTCTAGCAG
1 CTCAATTCTTCCCTCTAGCAG
11510 CTCAATTCTTCCCTC-AGGCAG
1 CTCAATTCTTCCCTCTA-GCAG
*
11531 CTC-ATTCTTCCCCTCTGGCAG
1 CTCAATTCTT-CCCTCTAGCAG
11552 CTCA
1 CTCA
11556 GCCCATTCTT
Statistics
Matches: 41, Mismatches: 1, Indels: 7
0.84 0.02 0.14
Matches are distributed among these distances:
20 7 0.17
21 34 0.83
ACGTcount: A:0.16, C:0.40, G:0.12, T:0.31
Consensus pattern (21 bp):
CTCAATTCTTCCCTCTAGCAG
Left flanking sequence: Indices 10989 -- 11488
TGAGCTCAAACCGATTTGGATCTGAGATGGCCGATCTGAGTTGGCCAATCTGAGTTGGCCAATCT
AAGTTGGCTCAAAAGTATAGAGTATAGCTGGGTAACATTTCGTCACCTAACCCAGAACAAGAGAC
GTCACGACGTCACGATGTCACGACGTCACTATAATGCAGATACGATCACGGAAGATCTGAAACAA
GATGCTAATCGTTAAAATCAGCACCATAGGACGGTTTCACCCCTGGTCTAGCCCAAATGACCGTC
AGTGGCGGTTGACTGCTCAATCCTTCCCCACTGTGGCTGGTCAGCTCAATTCTTCCCCACTGTGG
CTGATCAACTCTTGCTCTCGGGTAGATCAGCTCAATTACCCTCAGATCAGCTCAATTCCCCCTGG
TAGATCAGCTCAATTCTCCTCGCGGTAGAACAGCTCAATTCTTCCCCTTCAGCTCAATTCTTCTC
CTCTGTGGCAAACCAGCTCAATTCTTCTTCTCTGTGGCAAACCAT
Right flanking sequence: Indices 11556 -- 12055
GCCCATTCTTCCCCTCCGTTCTTCACATCTCAACACACGCCTTGCATTTATTCCGTGTATTCCCT
ACTTTTTCATGAGTCCCTGTACCGACGGCATTCTGCGAGAGAACCGCCGCATCAAATTGTCCTTG
TGGGGCGAGCTGCTATCGAGACTCGGGGTCCCGCTGGTGTTGGACCCGCTCCGGTGCCGCGTGGG
CGACCCAGAGATCCGGCTCGAGCGCGACAGGTTGCGGTGGGACCCCAACGGCGGGGTGGCAGCCC
TGGGCAGCTCGCCGTCGAAATCCCCCCCGTAGGCACTCGTGGCGAGTATCAGCCCGCGGGTGTGG
CTCTTCTCGGGCGACGGCAGCTCCTTCGGGGGCCGTGGCTGGAGCGCGGGCGAGCTCACGAGGTG
CTTGCGCTTGGACAACCGGAACACCGTCTGCACGGGCTTCAAGTAGATCAGGGCCAACGTGCCAA
TGGCAAGCTCGAGCTCCTCGAGGATCAGCGGGTCGATGGTGTCGT
Found at i:14170 original size:10 final size:10
Alignment explanation
Indices: 14157--14181 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
14147 TGTGGCGGTT
14157 TGTGGTGATC
1 TGTGGTGATC
14167 TGTGGTGATC
1 TGTGGTGATC
14177 TGTGG
1 TGTGG
14182 CCCGAGCGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.08, C:0.08, G:0.44, T:0.40
Consensus pattern (10 bp):
TGTGGTGATC
Left flanking sequence: Indices 13657 -- 14156
CCGACGGTCTTCGGGTTGGGTTTGCGGGGTTTTTTGTTGGCCTGGTCGAGTTCGGCGAGGAGCTC
GCGCAGCTTTGCCTTGGCAAAGTACTTGGAGTCGCTCATGGCCGTGGGTGGGTGTGGGTGTGGGT
GTGTAGGAGGGGTAGGTTTGGGGTAGGCTATGGAAATGTTCGCAAAGATGGTAGCGCGGGATAGA
GATAGGGGATAGCGATAAGGGGAATCAGGGAAATAGGGATGGTTGTGAAAAGCGAGGTGGTTATT
GAGGTGGGAATGAGGTGGGAGCGAGGTGTGGGGTGCTGTTTGGGTCTGGTTGTGGATGGTTAGGT
GAGTGGTGGAGAGATGGAAGGGAACTGTAGAGAAAAATAGCGGAGATAGAGGAGGTTAAGGGATG
GGCGCAATTGGGGCCTGGTGGGGTGGGTTGCGCGTCCAGTGGGTTACGTGGGTGGTTTAAACGGG
TTTGTAGTGTTTTAGTTGTGGTGTAGACGCGTTAGTGTGGCGGTT
Right flanking sequence: Indices 14182 -- 14681
CCCGAGCGTTCCATAGTGAGGGTGGAAAAGTACAACCACAACTTATAGCCCATATCGCTTTTGGC
CCCATCACGGTCTACTCTCGGCCAGCCAGCAGCAAACCCGAGCTCCTCGCATCCGTAGTCCATTG
TTTGGGGTTGCTTGCTCACCCCGGTGTTCGGAAGGGTTTTTCCGAACCGTGTCCGAGCCCACCAA
TATAAAATGAGCCAAGGCAGTGGGGTTAAGCAAACTGGATTGGTTCTCGTCTAAAACTGCCATGT
GAAGATCGAACGACAGACACAAGCGTTACCACCTTGGGCGGGGACAGACACGCAAGTGTTCCCAT
CTGGGCAGGGTTCGATCTATATGCTGTGATCCGCCTCAGGGTCCTCGTGTGACAGATCGTGGGGT
AGCAGGATGAAAGCATGGTATCGGATGGGTCTTAAAAACGTACTAAAGAAATTTGGGGGTTTTTG
TAGGGCTTTCCAGAACACAATGTGATTCGTGTTGGCTATACCCGT
Found at i:19885 original size:4 final size:4
Alignment explanation
Indices: 19876--19917 Score: 50
Period size: 4 Copynumber: 10.8 Consensus size: 4
19866 TCCCTATCTC
* * *
19876 TCTT TCTT TCTT GCTC TCTT TC-C TCTT TCTT TCTT TCTT TCT
1 TCTT TCTT TCTT TCTT TCTT TCTT TCTT TCTT TCTT TCTT TCT
19918 CTCTCTACTG
Statistics
Matches: 31, Mismatches: 6, Indels: 2
0.79 0.15 0.05
Matches are distributed among these distances:
3 2 0.06
4 29 0.94
ACGTcount: A:0.00, C:0.31, G:0.02, T:0.67
Consensus pattern (4 bp):
TCTT
Left flanking sequence: Indices 19376 -- 19875
GGGTGTGGCTGGGAGTGGTGTAGAGGGGTTTCATCTACTCAATCGGTGGTTTGATTGGGCTGGTT
GTGTGTACGCGATGGGGACAATAAGTCCACATATGGGGTTGGTAGAGTGCTAAACACAAGCTGGA
AACAATTTGGTGGGCTGTTTATCCCGGTTTCAATGGCCCCGTACTACTCTCTCTCCGTCCACCCC
TCTCCTCGATGAAACACTGGTGTCTAATTGCTCGTCTATGTTAATATACTGCATATAGGGTGGTT
GGCAAACTGGTTCACCGATAGTGACGTAGACCAAGACAGGGCCAAACGTGGTGAAAAGTTCTTAG
AAAAGACTCGATTCGGGTGTCAGCCTCACTGGTGGAAGCCCATTAATTTACATTCCCAATTGAAT
CAATATCAACCTCATCTACCGTACCACTCTAACCTTATAACCACCTTAACTAACCATTCCAGTCA
AAATTCAATAGGCAGCCTAACATTCTTTCGATCTTTCCCTATCTC
Right flanking sequence: Indices 19918 -- 20417
CTCTCTACTGTCCCAATTGAACCAGTTTCATTTCTTCTACCGTACCACTTTACCGTGAATTGAGT
CAGCTAACTAACAATTCCACTCAATATTCAAAAGGCAACCTAACTTTCTTTCCCTTTCTCTCTTT
CTTTCTCTCTTCCATATATTGAGTCACCTAACAAATCCAGTCAAAAATCAATAGGCAACCTACCT
GTGTGTCTTTCTTTCTCCCTCTCTCCCCTTCTCTCACAACTTCGTCACCTTCTGCGTGTTCAACT
CAAGCAACTTCACCGGGTACTGGCCCTTGCGGTAGCCCATGTGCCAGTTGCCCCCGTCCACCACC
TGGACGGTGCCCGTGATGTACAGCGCCGCTTCGGAAAACAAAAACACCGTGGCGTTGGCTATGTC
CCCGGTGGTGCCCAACCGCTGCGCGGGGATCGTCTGGGCCACCCCCTCGGGGTTCACCGCCAACC
GCTTGTACCCCTCGGTCCCGCCAATGGGCCCGGGCGCCAACGCGT
Found at i:21150 original size:17 final size:17
Alignment explanation
Indices: 21118--21183 Score: 72
Period size: 14 Copynumber: 4.2 Consensus size: 17
21108 AGAGGGGGAT
21118 GGTGGTGGGTT-G--GA
1 GGTGGTGGGTTGGTAGA
21132 GGTGGTGGGTTGGTAGA
1 GGTGGTGGGTTGGTAGA
21149 GGTGGT--G-TGGTAGA
1 GGTGGTGGGTTGGTAGA
*
21163 GGTGGTGTGGTTTGTAGA
1 GGTGGTG-GGTTGGTAGA
21181 GGT
1 GGT
21184 ATGGGTGAGA
Statistics
Matches: 44, Mismatches: 1, Indels: 10
0.80 0.02 0.18
Matches are distributed among these distances:
14 24 0.55
15 2 0.05
17 9 0.20
18 9 0.20
ACGTcount: A:0.11, C:0.00, G:0.58, T:0.32
Consensus pattern (17 bp):
GGTGGTGGGTTGGTAGA
Left flanking sequence: Indices 20618 -- 21117
ATGTCCACCACCGACTTGAACGCGTTCAGCGACAAATGGTTGAAGTCCGCAAGGAAGTTGCCGGC
AGCCCCCGCTATCACGTAGTCGATCCGGCCCAACTCCGCCACCGTCTTGTCGGCCGCAGCCTTGA
GCGACTGCACAGACCGCACGTCGGTGGTGGGGCACGCCACCACTCGCGCTCCTGGCCGTACCCGT
GACAATTCCTCGGCCGCAGCCACCGTCTTGCTCTCGTTGCGCCCGATGATGGCCGCGTCGGCCCC
GAGGGCGATCATGGCCTCGGCCTGGTCCTTGCAAATGGTGCCACCGCCGCCGGTGACAAACACGA
CTTTGCCCTTGAAGAGATCGGGCTTCCACACCGACTCGGTGCTCCAGTGGTTTCCAAGAGGCATG
GTGTGGGGATGGCGTTGGTTGGTTTTGTGGGGTATAATCACGTGAAAGTGAGAGAACGCGAGATA
AGGGTGGGGAGTGGTTCAATGGAATGAGGAGATGTAGAGGGGGAT
Right flanking sequence: Indices 21184 -- 21683
ATGGGTGAGAGTTGTGGTTCCTTTCTTTGAGTCTTTGTTCGGGCCCGTTAAGGTTCCGGAGTTAT
ATCCGGTGCGATCGTACGATTTTGTGGATGGCTGCAAACGGTAAGCGAGAGGGACAAAGGATTGG
GTGAGGTGGGGACCCAGGAGGGGGCGAGTTGGGACCCGCGGGTTGTTCAAATTATATTAAGTGCT
GATACGAGCTGATACGAGCTGATACACACTTTCTTCTCTAGGTCGCATTAGTTTCATCATCCAGA
AGAGGTTGCATTTTCTCAGTGCAACCTGTCACTTCACAAAACAGCCTCGCACCACCTGAGCGCCA
ATGTGACGCTGACATTAATATACGTGTCAACCTCGTCACACATTCTTCTCTATTCTCCGAGTCAA
ACCAGAATTTGACTCCCTTTGTAACTCTAATCTACGTATATTTTTCCTCCATTCCCTCAGCAATC
CTCAGCGATCCTCAGTTACCCTCATAAAACCTCTATCTACCTCCT
Found at i:21391 original size:10 final size:10
Alignment explanation
Indices: 21376--21403 Score: 56
Period size: 10 Copynumber: 2.8 Consensus size: 10
21366 TATATTAAGT
21376 GCTGATACGA
1 GCTGATACGA
21386 GCTGATACGA
1 GCTGATACGA
21396 GCTGATAC
1 GCTGATAC
21404 ACACTTTCTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.29, C:0.21, G:0.29, T:0.21
Consensus pattern (10 bp):
GCTGATACGA
Left flanking sequence: Indices 20876 -- 21375
CCGAGGGCGATCATGGCCTCGGCCTGGTCCTTGCAAATGGTGCCACCGCCGCCGGTGACAAACAC
GACTTTGCCCTTGAAGAGATCGGGCTTCCACACCGACTCGGTGCTCCAGTGGTTTCCAAGAGGCA
TGGTGTGGGGATGGCGTTGGTTGGTTTTGTGGGGTATAATCACGTGAAAGTGAGAGAACGCGAGA
TAAGGGTGGGGAGTGGTTCAATGGAATGAGGAGATGTAGAGGGGGATGGTGGTGGGTTGGAGGTG
GTGGGTTGGTAGAGGTGGTGTGGTAGAGGTGGTGTGGTTTGTAGAGGTATGGGTGAGAGTTGTGG
TTCCTTTCTTTGAGTCTTTGTTCGGGCCCGTTAAGGTTCCGGAGTTATATCCGGTGCGATCGTAC
GATTTTGTGGATGGCTGCAAACGGTAAGCGAGAGGGACAAAGGATTGGGTGAGGTGGGGACCCAG
GAGGGGGCGAGTTGGGACCCGCGGGTTGTTCAAATTATATTAAGT
Right flanking sequence: Indices 21404 -- 21903
ACACTTTCTTCTCTAGGTCGCATTAGTTTCATCATCCAGAAGAGGTTGCATTTTCTCAGTGCAAC
CTGTCACTTCACAAAACAGCCTCGCACCACCTGAGCGCCAATGTGACGCTGACATTAATATACGT
GTCAACCTCGTCACACATTCTTCTCTATTCTCCGAGTCAAACCAGAATTTGACTCCCTTTGTAAC
TCTAATCTACGTATATTTTTCCTCCATTCCCTCAGCAATCCTCAGCGATCCTCAGTTACCCTCAT
AAAACCTCTATCTACCTCCTACCTCCACCTTCTCTACCTCTCACCTCCTCCCACCTCCTCTACCT
TCCTCCTCTACCTCCACTATCCCTCCTTCCTCCCTCCACTCTCTTCCCCCCCTCTACCCCACTTA
AACGCGTTTTTCGCGCGCGTTTCACAATCACCCGACCCAAACGCCAACCATGCTCTACCGCCGGA
CCGGCCGCAGAGCGTTGCTTGTGCTAGCTGTTCTCATGGCACCCT
Found at i:21733 original size:13 final size:13
Alignment explanation
Indices: 21717--21741 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
21707 CCTCCTCCCA
21717 CCTCCTCTACCTT
1 CCTCCTCTACCTT
21730 CCTCCTCTACCT
1 CCTCCTCTACCT
21742 CCACTATCCC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.08, C:0.56, G:0.00, T:0.36
Consensus pattern (13 bp):
CCTCCTCTACCTT
Left flanking sequence: Indices 21217 -- 21716
TTTGTTCGGGCCCGTTAAGGTTCCGGAGTTATATCCGGTGCGATCGTACGATTTTGTGGATGGCT
GCAAACGGTAAGCGAGAGGGACAAAGGATTGGGTGAGGTGGGGACCCAGGAGGGGGCGAGTTGGG
ACCCGCGGGTTGTTCAAATTATATTAAGTGCTGATACGAGCTGATACGAGCTGATACACACTTTC
TTCTCTAGGTCGCATTAGTTTCATCATCCAGAAGAGGTTGCATTTTCTCAGTGCAACCTGTCACT
TCACAAAACAGCCTCGCACCACCTGAGCGCCAATGTGACGCTGACATTAATATACGTGTCAACCT
CGTCACACATTCTTCTCTATTCTCCGAGTCAAACCAGAATTTGACTCCCTTTGTAACTCTAATCT
ACGTATATTTTTCCTCCATTCCCTCAGCAATCCTCAGCGATCCTCAGTTACCCTCATAAAACCTC
TATCTACCTCCTACCTCCACCTTCTCTACCTCTCACCTCCTCCCA
Right flanking sequence: Indices 21742 -- 22241
CCACTATCCCTCCTTCCTCCCTCCACTCTCTTCCCCCCCTCTACCCCACTTAAACGCGTTTTTCG
CGCGCGTTTCACAATCACCCGACCCAAACGCCAACCATGCTCTACCGCCGGACCGGCCGCAGAGC
GTTGCTTGTGCTAGCTGTTCTCATGGCACCCTTGCTTGTCATCGGGGTCATGTCCTACACCCACC
CGCACCACGTCCAGAAGCTGCTTGACAAGCTCAAGGACTTTGCCCCGAAACAGGACCACTTTGAC
TACTTGTTGCTGAAGTTCAAGGGCACCAACTCCACAATGTCCGTGGGCGACGGGGCCACCATCGA
GAAGGAAAACGTCGGCTTCGAGTTTGTGCGGAAAAAATCAGGCCTGGCCGACGCCATTGCCAAAA
AGAACACCAAGACCTACCAGGACCTCTTGACCCAGCCTATCACCGAGCCACTCGACTATGACGTC
AACCTTTTGCGGGCACCCCCGCTGCCGCACGACTACCCGAACCGC
Found at i:21736 original size:26 final size:25
Alignment explanation
Indices: 21668--21736 Score: 68
Period size: 26 Copynumber: 2.7 Consensus size: 25
21658 CCTCATAAAA
* *
21668 CCTCTATCTACCTCCTACCTCCACCT
1 CCTCTACCTTCCTCCT-CCTCCACCT
* *
21694 TCTCTACC-TCTCACCTCCTCCCACCT
1 CCTCTACCTTC-CTCCTCCT-CCACCT
21720 CCTCTACCTTCCTCCTC
1 CCTCTACCTTCCTCCTC
21737 TACCTCCACT
Statistics
Matches: 34, Mismatches: 6, Indels: 6
0.74 0.13 0.13
Matches are distributed among these distances:
25 4 0.12
26 28 0.82
27 2 0.06
ACGTcount: A:0.12, C:0.57, G:0.00, T:0.32
Consensus pattern (25 bp):
CCTCTACCTTCCTCCTCCTCCACCT
Left flanking sequence: Indices 21168 -- 21667
TGTGGTTTGTAGAGGTATGGGTGAGAGTTGTGGTTCCTTTCTTTGAGTCTTTGTTCGGGCCCGTT
AAGGTTCCGGAGTTATATCCGGTGCGATCGTACGATTTTGTGGATGGCTGCAAACGGTAAGCGAG
AGGGACAAAGGATTGGGTGAGGTGGGGACCCAGGAGGGGGCGAGTTGGGACCCGCGGGTTGTTCA
AATTATATTAAGTGCTGATACGAGCTGATACGAGCTGATACACACTTTCTTCTCTAGGTCGCATT
AGTTTCATCATCCAGAAGAGGTTGCATTTTCTCAGTGCAACCTGTCACTTCACAAAACAGCCTCG
CACCACCTGAGCGCCAATGTGACGCTGACATTAATATACGTGTCAACCTCGTCACACATTCTTCT
CTATTCTCCGAGTCAAACCAGAATTTGACTCCCTTTGTAACTCTAATCTACGTATATTTTTCCTC
CATTCCCTCAGCAATCCTCAGCGATCCTCAGTTACCCTCATAAAA
Right flanking sequence: Indices 21737 -- 22236
TACCTCCACTATCCCTCCTTCCTCCCTCCACTCTCTTCCCCCCCTCTACCCCACTTAAACGCGTT
TTTCGCGCGCGTTTCACAATCACCCGACCCAAACGCCAACCATGCTCTACCGCCGGACCGGCCGC
AGAGCGTTGCTTGTGCTAGCTGTTCTCATGGCACCCTTGCTTGTCATCGGGGTCATGTCCTACAC
CCACCCGCACCACGTCCAGAAGCTGCTTGACAAGCTCAAGGACTTTGCCCCGAAACAGGACCACT
TTGACTACTTGTTGCTGAAGTTCAAGGGCACCAACTCCACAATGTCCGTGGGCGACGGGGCCACC
ATCGAGAAGGAAAACGTCGGCTTCGAGTTTGTGCGGAAAAAATCAGGCCTGGCCGACGCCATTGC
CAAAAAGAACACCAAGACCTACCAGGACCTCTTGACCCAGCCTATCACCGAGCCACTCGACTATG
ACGTCAACCTTTTGCGGGCACCCCCGCTGCCGCACGACTACCCGA
Found at i:23794 original size:18 final size:18
Alignment explanation
Indices: 23763--23799 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
23753 CTTACCCTTC
* *
23763 TTTGTTTCGTCCCACCAA
1 TTTGTGTCGCCCCACCAA
23781 TTTGTGTCGCCCCACCAA
1 TTTGTGTCGCCCCACCAA
23799 T
1 T
23800 ACAAACCACC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.16, C:0.35, G:0.14, T:0.35
Consensus pattern (18 bp):
TTTGTGTCGCCCCACCAA
Left flanking sequence: Indices 23263 -- 23762
ATGAAGAAAATGGAAATAGAAATAAATGCGTTTGAAGAGTCTCAAAAAGGGGAAATTGGACCAGG
GTAGTTTGTGGGCTATGATAGTGGTGTAGGGAGTATTTTTGGGTGCTTATTCGGTGAAATGTTGT
CAAATTTGGCCCTATTTCATCTGACTCTCCCTGATCCAGCCAATTTCAACTTTTTTATACGCGCT
CTTATGGCCAAGTGGTAAGGCACCTCACTAGTAATGAGGAGATCGTCAGTTCGAATCTGGCTGAG
AGCAGCGCTTTCTTTTTGCACTTTTTGGACCGTAGACGGTGTCGAAAGCTTCCTTTTTGCACTCA
TTGCTCCTTTATTCAATGGTAATACTCGTTCCCTTCTAGACTACGTGTTATTACAAGCTTACAAA
CTACCTGCTGATTACCAATTTAACCCTGATCAGCGATCAGTTGATCCCTTCCAACCTTCCAAGAG
GCTCTCAAATAACAGTTGGCTGCTCAAATGGGGTCCTTACCCTTC
Right flanking sequence: Indices 23800 -- 24299
ACAAACCACCTCTTACTCTACCACCTTTCCATTGTCGTTAATTATGCTATATGCTACTCCTTCTT
GAACACCACGCTGGTCTCAGGGTATTTAGTCGTCTCCTTCAACCACTTCAAGTGCGGCAAAAACA
CCTTCTCGCACTGGTCCTTCAGGCCCTTCTCGCAGAACTTGACGTACTCGAGGTAATCGCCCATG
TACTCGCCACTGTCGATCCCCGCAGTGCCGTCCACGGGCTTGCCGTCGCCGTCAAAGTAGTCCTT
GCACATGCCCATGGTGAAGAATTGGAGCACCCGCAAGTCAAAGTCGTAGCCCAACTTCTCGTTGA
CGCTCTCGTACATCCGCAACTGCTTGCCGGACTTCTTCAGCACGAGCTCGTGGTTGTCGTACAAC
CACAGCGGGTAGAACTTGGGGTACAGCAAGTGCATGAACACCAACCGGGCGTCGTCGTTCTTCTC
GGGCGCAGAGTCGTCGGGGTCAAAGTGGCCGAGCGCCTTCAGGTC
Found at i:26730 original size:20 final size:20
Alignment explanation
Indices: 26684--26762 Score: 97
Period size: 19 Copynumber: 4.0 Consensus size: 20
26674 ACAAGCCGTA
* * *
26684 CACAATCACTAGACAATTCTA
1 CACAATCCCTACACAATTC-C
*
26705 CACAATCCCTCCACAATTCC
1 CACAATCCCTACACAATTCC
26725 CACAATCCCTACAC-ATTCC
1 CACAATCCCTACACAATTCC
*
26744 CACAATTCCTACACAATTC
1 CACAATCCCTACACAATTC
26763 ACCCCATTCC
Statistics
Matches: 51, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
19 18 0.35
20 17 0.33
21 16 0.31
ACGTcount: A:0.35, C:0.41, G:0.01, T:0.23
Consensus pattern (20 bp):
CACAATCCCTACACAATTCC
Left flanking sequence: Indices 26184 -- 26683
TACCGGCTCTCGGGGGTTTATGTAACTGAAAACCACCGACGAACACTAAGATGACCACTAAAATA
TGCATTACTCATTATAGCCAAACACTTGACGCTCACAAGCTCGTGGAAATTAGAACAGATAAGCT
ACACGATGTGTTGGCATGCCGCACATATGAGGACGTAGATTGGTGAAATTTGCTTTTATACCGCG
GCGATGGCCGGTGTGCACATAGGCACCTGTGTCACGTGAGCGCTAAGTTACCCGCCTAGCTTAGG
GCTAAGTGTCAGCCGGCTGGAATCGGTAGGCGATGCGGGGTGGTTGCAGGCCCATGCACCCCGCT
GTTAGGGTGACACAAAGTGTGAATGTGGTGATGTAACATTCATCGGGCAGATTAGGAAATACACG
AACAATACGAGTCGGAGTCCCTCAATTGCAACAGATTGCAGACATTCCCAAACCCAAACAAGTCC
ACATAATTCGTACGCCATACCTACACAATCCGTACACAAGCCGTA
Right flanking sequence: Indices 26763 -- 27262
ACCCCATTCCATGGTGATCAACCCAATACTCTTCTAATACTATTCTCGTACCTTACTTCTCGTCT
TTAATCTCCTTCTTCATTCATATCCTCGCCTCACGCTACATCTTACCATCTCTCTCCTCCCACTT
CCGTCACCTCCATTCTACTTCCCATTTCCATCACTTCCATTCTCCTTCCCCCTCCTACTTCTCCC
CTCCTACTTCCCTCCTACTTCTCCCGCTTCACCCTGATTCACCCTTACCCCCCCTCACTCCCTTT
TCCCCTCTTCTCCCTATTCCACGTCCAAACCTTGTTCTCCCACCTCACACGACTCCACCCGGACA
CCTTTCTCCCGTCGTGGGCCCATCTATTTTTGCAATCGTTAGCGATCGCACGCACCAACCACCCG
CTAGCCAATGAACGACGCGCAAACCGCGACAATATTTACCCCGTGTGTCAGCCTCGACACACCCA
CCCGCCGTAGCGAGCCCCCAGCAGCCCCGTAGCCCACCCCACCGC
Found at i:26747 original size:8 final size:9
Alignment explanation
Indices: 26715--26762 Score: 53
Period size: 9 Copynumber: 5.0 Consensus size: 9
26705 CACAATCCCT
26715 CCACAATTC
1 CCACAATTC
26724 CCACAA-TC
1 CCACAATTC
26732 CCTACACATTC
1 CC-ACA-ATTC
26743 CCACAATTC
1 CCACAATTC
26752 CTACACAATTC
1 C--CACAATTC
26763 ACCCCATTCC
Statistics
Matches: 34, Mismatches: 0, Indels: 8
0.81 0.00 0.19
Matches are distributed among these distances:
8 4 0.12
9 14 0.41
10 4 0.12
11 12 0.35
ACGTcount: A:0.33, C:0.44, G:0.00, T:0.23
Consensus pattern (9 bp):
CCACAATTC
Left flanking sequence: Indices 26215 -- 26714
ACCACCGACGAACACTAAGATGACCACTAAAATATGCATTACTCATTATAGCCAAACACTTGACG
CTCACAAGCTCGTGGAAATTAGAACAGATAAGCTACACGATGTGTTGGCATGCCGCACATATGAG
GACGTAGATTGGTGAAATTTGCTTTTATACCGCGGCGATGGCCGGTGTGCACATAGGCACCTGTG
TCACGTGAGCGCTAAGTTACCCGCCTAGCTTAGGGCTAAGTGTCAGCCGGCTGGAATCGGTAGGC
GATGCGGGGTGGTTGCAGGCCCATGCACCCCGCTGTTAGGGTGACACAAAGTGTGAATGTGGTGA
TGTAACATTCATCGGGCAGATTAGGAAATACACGAACAATACGAGTCGGAGTCCCTCAATTGCAA
CAGATTGCAGACATTCCCAAACCCAAACAAGTCCACATAATTCGTACGCCATACCTACACAATCC
GTACACAAGCCGTACACAATCACTAGACAATTCTACACAATCCCT
Right flanking sequence: Indices 26763 -- 27262
ACCCCATTCCATGGTGATCAACCCAATACTCTTCTAATACTATTCTCGTACCTTACTTCTCGTCT
TTAATCTCCTTCTTCATTCATATCCTCGCCTCACGCTACATCTTACCATCTCTCTCCTCCCACTT
CCGTCACCTCCATTCTACTTCCCATTTCCATCACTTCCATTCTCCTTCCCCCTCCTACTTCTCCC
CTCCTACTTCCCTCCTACTTCTCCCGCTTCACCCTGATTCACCCTTACCCCCCCTCACTCCCTTT
TCCCCTCTTCTCCCTATTCCACGTCCAAACCTTGTTCTCCCACCTCACACGACTCCACCCGGACA
CCTTTCTCCCGTCGTGGGCCCATCTATTTTTGCAATCGTTAGCGATCGCACGCACCAACCACCCG
CTAGCCAATGAACGACGCGCAAACCGCGACAATATTTACCCCGTGTGTCAGCCTCGACACACCCA
CCCGCCGTAGCGAGCCCCCAGCAGCCCCGTAGCCCACCCCACCGC
Found at i:26761 original size:11 final size:11
Alignment explanation
Indices: 26658--26762 Score: 75
Period size: 11 Copynumber: 10.1 Consensus size: 11
26648 GTACGCCATA
26658 CCTACACAA-T
1 CCTACACAATT
*
26668 CCGTACACAA-G
1 CC-TACACAATT
26679 CCGTACACAA-T
1 CC-TACACAATT
*
26690 CACTAGACAATT
1 C-CTACACAATT
*
26702 -CTACACAATC
1 CCTACACAATT
*
26712 CCTCCACAATT
1 CCTACACAATT
*
26723 CC--CACAATC
1 CCTACACAATT
26732 CCTACAC-ATT
1 CCTACACAATT
26742 CC--CACAATT
1 CCTACACAATT
26751 CCTACACAATT
1 CCTACACAATT
26762 C
1 C
26763 ACCCCATTCC
Statistics
Matches: 77, Mismatches: 9, Indels: 17
0.75 0.09 0.17
Matches are distributed among these distances:
8 3 0.04
9 13 0.17
10 14 0.18
11 45 0.58
12 2 0.03
ACGTcount: A:0.35, C:0.40, G:0.04, T:0.21
Consensus pattern (11 bp):
CCTACACAATT
Left flanking sequence: Indices 26158 -- 26657
AGGCTCATCTCACAATATGTCTGGTCTACCGGCTCTCGGGGGTTTATGTAACTGAAAACCACCGA
CGAACACTAAGATGACCACTAAAATATGCATTACTCATTATAGCCAAACACTTGACGCTCACAAG
CTCGTGGAAATTAGAACAGATAAGCTACACGATGTGTTGGCATGCCGCACATATGAGGACGTAGA
TTGGTGAAATTTGCTTTTATACCGCGGCGATGGCCGGTGTGCACATAGGCACCTGTGTCACGTGA
GCGCTAAGTTACCCGCCTAGCTTAGGGCTAAGTGTCAGCCGGCTGGAATCGGTAGGCGATGCGGG
GTGGTTGCAGGCCCATGCACCCCGCTGTTAGGGTGACACAAAGTGTGAATGTGGTGATGTAACAT
TCATCGGGCAGATTAGGAAATACACGAACAATACGAGTCGGAGTCCCTCAATTGCAACAGATTGC
AGACATTCCCAAACCCAAACAAGTCCACATAATTCGTACGCCATA
Right flanking sequence: Indices 26763 -- 27262
ACCCCATTCCATGGTGATCAACCCAATACTCTTCTAATACTATTCTCGTACCTTACTTCTCGTCT
TTAATCTCCTTCTTCATTCATATCCTCGCCTCACGCTACATCTTACCATCTCTCTCCTCCCACTT
CCGTCACCTCCATTCTACTTCCCATTTCCATCACTTCCATTCTCCTTCCCCCTCCTACTTCTCCC
CTCCTACTTCCCTCCTACTTCTCCCGCTTCACCCTGATTCACCCTTACCCCCCCTCACTCCCTTT
TCCCCTCTTCTCCCTATTCCACGTCCAAACCTTGTTCTCCCACCTCACACGACTCCACCCGGACA
CCTTTCTCCCGTCGTGGGCCCATCTATTTTTGCAATCGTTAGCGATCGCACGCACCAACCACCCG
CTAGCCAATGAACGACGCGCAAACCGCGACAATATTTACCCCGTGTGTCAGCCTCGACACACCCA
CCCGCCGTAGCGAGCCCCCAGCAGCCCCGTAGCCCACCCCACCGC
Found at i:26915 original size:27 final size:27
Alignment explanation
Indices: 26885--26942 Score: 80
Period size: 27 Copynumber: 2.1 Consensus size: 27
26875 ATCTCTCTCC
*
26885 TCCCACTTCCGTCACCTCCATTCTACT
1 TCCCACTTCCATCACCTCCATTCTACT
* * *
26912 TCCCATTTCCATCACTTCCATTCTCCT
1 TCCCACTTCCATCACCTCCATTCTACT
26939 TCCC
1 TCCC
26943 CCTCCTACTT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.14, C:0.48, G:0.02, T:0.36
Consensus pattern (27 bp):
TCCCACTTCCATCACCTCCATTCTACT
Left flanking sequence: Indices 26385 -- 26884
GCCGGTGTGCACATAGGCACCTGTGTCACGTGAGCGCTAAGTTACCCGCCTAGCTTAGGGCTAAG
TGTCAGCCGGCTGGAATCGGTAGGCGATGCGGGGTGGTTGCAGGCCCATGCACCCCGCTGTTAGG
GTGACACAAAGTGTGAATGTGGTGATGTAACATTCATCGGGCAGATTAGGAAATACACGAACAAT
ACGAGTCGGAGTCCCTCAATTGCAACAGATTGCAGACATTCCCAAACCCAAACAAGTCCACATAA
TTCGTACGCCATACCTACACAATCCGTACACAAGCCGTACACAATCACTAGACAATTCTACACAA
TCCCTCCACAATTCCCACAATCCCTACACATTCCCACAATTCCTACACAATTCACCCCATTCCAT
GGTGATCAACCCAATACTCTTCTAATACTATTCTCGTACCTTACTTCTCGTCTTTAATCTCCTTC
TTCATTCATATCCTCGCCTCACGCTACATCTTACCATCTCTCTCC
Right flanking sequence: Indices 26943 -- 27442
CCTCCTACTTCTCCCCTCCTACTTCCCTCCTACTTCTCCCGCTTCACCCTGATTCACCCTTACCC
CCCCTCACTCCCTTTTCCCCTCTTCTCCCTATTCCACGTCCAAACCTTGTTCTCCCACCTCACAC
GACTCCACCCGGACACCTTTCTCCCGTCGTGGGCCCATCTATTTTTGCAATCGTTAGCGATCGCA
CGCACCAACCACCCGCTAGCCAATGAACGACGCGCAAACCGCGACAATATTTACCCCGTGTGTCA
GCCTCGACACACCCACCCGCCGTAGCGAGCCCCCAGCAGCCCCGTAGCCCACCCCACCGCGTCAC
ACCACCGCTAGCACCGTCCCCACTCCTCCCCCGCAACCCGCCCGCGTCACATGGGTCTCGGCGCA
ATGGAGCGACGGTTAGATCGCTGCGGGTTACCCCTCATATTTGAGACGTTTTTCTGCGAACTTTT
CAACAACTTTGGCCATGACCCAGGACTTGCCCTTCATCTACCAAT
Found at i:26960 original size:14 final size:14
Alignment explanation
Indices: 26937--26982 Score: 64
Period size: 14 Copynumber: 3.6 Consensus size: 14
26927 TTCCATTCTC
26937 CTTC-CCCCTCCTA
1 CTTCTCCCCTCCTA
26950 CTTCTCCCCTCCTA
1 CTTCTCCCCTCCTA
26964 C-T-T-CCCTCCTA
1 CTTCTCCCCTCCTA
26975 CTTCTCCC
1 CTTCTCCC
26983 GCTTCACCCT
Statistics
Matches: 29, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
11 9 0.31
12 2 0.07
13 6 0.21
14 12 0.41
ACGTcount: A:0.07, C:0.59, G:0.00, T:0.35
Consensus pattern (14 bp):
CTTCTCCCCTCCTA
Left flanking sequence: Indices 26437 -- 26936
GCTTAGGGCTAAGTGTCAGCCGGCTGGAATCGGTAGGCGATGCGGGGTGGTTGCAGGCCCATGCA
CCCCGCTGTTAGGGTGACACAAAGTGTGAATGTGGTGATGTAACATTCATCGGGCAGATTAGGAA
ATACACGAACAATACGAGTCGGAGTCCCTCAATTGCAACAGATTGCAGACATTCCCAAACCCAAA
CAAGTCCACATAATTCGTACGCCATACCTACACAATCCGTACACAAGCCGTACACAATCACTAGA
CAATTCTACACAATCCCTCCACAATTCCCACAATCCCTACACATTCCCACAATTCCTACACAATT
CACCCCATTCCATGGTGATCAACCCAATACTCTTCTAATACTATTCTCGTACCTTACTTCTCGTC
TTTAATCTCCTTCTTCATTCATATCCTCGCCTCACGCTACATCTTACCATCTCTCTCCTCCCACT
TCCGTCACCTCCATTCTACTTCCCATTTCCATCACTTCCATTCTC
Right flanking sequence: Indices 26983 -- 27482
GCTTCACCCTGATTCACCCTTACCCCCCCTCACTCCCTTTTCCCCTCTTCTCCCTATTCCACGTC
CAAACCTTGTTCTCCCACCTCACACGACTCCACCCGGACACCTTTCTCCCGTCGTGGGCCCATCT
ATTTTTGCAATCGTTAGCGATCGCACGCACCAACCACCCGCTAGCCAATGAACGACGCGCAAACC
GCGACAATATTTACCCCGTGTGTCAGCCTCGACACACCCACCCGCCGTAGCGAGCCCCCAGCAGC
CCCGTAGCCCACCCCACCGCGTCACACCACCGCTAGCACCGTCCCCACTCCTCCCCCGCAACCCG
CCCGCGTCACATGGGTCTCGGCGCAATGGAGCGACGGTTAGATCGCTGCGGGTTACCCCTCATAT
TTGAGACGTTTTTCTGCGAACTTTTCAACAACTTTGGCCATGACCCAGGACTTGCCCTTCATCTA
CCAATTCGCAGCCGGCGCCATTGCCGGCGTGCTGGAGATCCTCGT
Found at i:39453 original size:17 final size:17
Alignment explanation
Indices: 39431--39466 Score: 63
Period size: 17 Copynumber: 2.1 Consensus size: 17
39421 TTTCAAACCA
*
39431 TGGTTTGGTGGTTGCCC
1 TGGTTTGATGGTTGCCC
39448 TGGTTTGATGGTTGCCC
1 TGGTTTGATGGTTGCCC
39465 TG
1 TG
39467 TTAATTATGG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.03, C:0.17, G:0.39, T:0.42
Consensus pattern (17 bp):
TGGTTTGATGGTTGCCC
Left flanking sequence: Indices 38931 -- 39430
TCCACCTCGAAGTCGGAGTACTCCTCCTCCTCCCCCAGCTCCTCTTCCAGCTCCTGGGCCTGGAA
CTTGTCGGAAAACAGCAAAGGAGCCCCCTTTTCTTCACGCTCCAACTCGTCCTGCTGCTCCTTGG
CCAAACTGAGAATCTTCTGCGACATCCGGGCGTCCAAGTAGTCTTCGTCAGCCTCGTGGTCACGC
TCGGACTGGCGCTTTTTCAGGGCAGCGGCAGCATCACGAAAGGTGCCCCCGGCATTGTTGATGTC
TTTGTACAACGGGTTGTGGCGCTGGGCTTGCAGCTCCCTCACGGTGATCTTCCCCATGGTTGTGG
TAGGAGATGCTCATCGCGGAGAAATTTAGGTGTGTGGTGCGGGCTCGTGACCAGACGCGAGAGAT
AAGGTGAGAGAAGGGAGTGGGTGGGAGGTGGTGTTGGGTAGAAGTAGGGATAGTTTCGGTGGGTG
CGATGATTATGGGTTGTGATTTATGATGGTATTGCTTTCAAACCA
Right flanking sequence: Indices 39467 -- 39966
TTAATTATGGTAATACTCTGTACCAATGTTCTAATGCGAGCCTCGTGAACGATGATCTGACCCGA
TCTCTGTTTAACTGATCCATTGGTGAATGACCATTAGTAGTTCTAGTGGGTTAGGCTACAAGATA
TCCCGAGCCCACCCCTCTTACCACGACAACAACACCGCTACCTCATTCCTTATCTTAACTACACA
CACTAACCTACTCACCTACTCACCTACCACCGACCACCTACCACCTACCACCTACTCACCTACCA
CCTACCACCTACCCCCCAACTTAATCAAGCTGACTCACGATCAACTCGTGGGTCGCTGCTACGGG
GAGCCCCACCACGTTGAAGTAGTCTCCCTCGATCGCGTCAAACAAGAGAGCCCCCTTCTCCTGGT
ACTTGAACCCGCCCGCAGCGTCCAACCCCTCTCCGCTCTCAACGTACCCCTCGATCCACGCCTGG
TAAATGCCCTGGTTGAACCGGAGCGTCGTGGGCACCACCTTCGTC
Found at i:39697 original size:7 final size:7
Alignment explanation
Indices: 39667--39739 Score: 110
Period size: 7 Copynumber: 10.0 Consensus size: 7
39657 ACACACACTA
39667 ACCTACTC
1 ACCTAC-C
39675 ACCTACTC
1 ACCTAC-C
39683 ACCTACC
1 ACCTACC
*
39690 ACCGACC
1 ACCTACC
39697 ACCTACC
1 ACCTACC
39704 ACCTACC
1 ACCTACC
39711 ACCTACTC
1 ACCTAC-C
39719 ACCTACC
1 ACCTACC
39726 ACCTACC
1 ACCTACC
39733 ACCTACC
1 ACCTACC
39740 CCCCAACTTA
Statistics
Matches: 62, Mismatches: 2, Indels: 3
0.93 0.03 0.04
Matches are distributed among these distances:
7 41 0.66
8 21 0.34
ACGTcount: A:0.27, C:0.55, G:0.01, T:0.16
Consensus pattern (7 bp):
ACCTACC
Left flanking sequence: Indices 39167 -- 39666
GGTGCCCCCGGCATTGTTGATGTCTTTGTACAACGGGTTGTGGCGCTGGGCTTGCAGCTCCCTCA
CGGTGATCTTCCCCATGGTTGTGGTAGGAGATGCTCATCGCGGAGAAATTTAGGTGTGTGGTGCG
GGCTCGTGACCAGACGCGAGAGATAAGGTGAGAGAAGGGAGTGGGTGGGAGGTGGTGTTGGGTAG
AAGTAGGGATAGTTTCGGTGGGTGCGATGATTATGGGTTGTGATTTATGATGGTATTGCTTTCAA
ACCATGGTTTGGTGGTTGCCCTGGTTTGATGGTTGCCCTGTTAATTATGGTAATACTCTGTACCA
ATGTTCTAATGCGAGCCTCGTGAACGATGATCTGACCCGATCTCTGTTTAACTGATCCATTGGTG
AATGACCATTAGTAGTTCTAGTGGGTTAGGCTACAAGATATCCCGAGCCCACCCCTCTTACCACG
ACAACAACACCGCTACCTCATTCCTTATCTTAACTACACACACTA
Right flanking sequence: Indices 39740 -- 40239
CCCCAACTTAATCAAGCTGACTCACGATCAACTCGTGGGTCGCTGCTACGGGGAGCCCCACCACG
TTGAAGTAGTCTCCCTCGATCGCGTCAAACAAGAGAGCCCCCTTCTCCTGGTACTTGAACCCGCC
CGCAGCGTCCAACCCCTCTCCGCTCTCAACGTACCCCTCGATCCACGCCTGGTAAATGCCCTGGT
TGAACCGGAGCGTCGTGGGCACCACCTTCGTCACGAGCGGCTTGTCCCCCACCTTGACCGTGACC
GCGCTCACCACGCGAATCGTGCCCACTTGCTGGTACTCGGCAATCATTTCCCGCTGGCGCTCCCG
GGTGGTGGGCTTCTCCCGAACCGCCCCGTCGTAGTCAATCACGGTATCGCAGCAGATAAGCACCA
GGTCCAGGGCCTTCCCCGCAGCCACAATCGCCTCGGCCTTGTTCCGACAGGTCGCAGCAACGTAC
TCGTCGACCGTCAACCCCTGCTTCGGAAGATCCTCGGCGTAGTTC
Found at i:39715 original size:36 final size:37
Alignment explanation
Indices: 39667--39739 Score: 130
Period size: 36 Copynumber: 2.0 Consensus size: 37
39657 ACACACACTA
39667 ACCTACTCACCTACTCACCTACCACCGACCACCTACC
1 ACCTACTCACCTACTCACCTACCACCGACCACCTACC
*
39704 ACCTAC-CACCTACTCACCTACCACCTACCACCTACC
1 ACCTACTCACCTACTCACCTACCACCGACCACCTACC
39740 CCCCAACTTA
Statistics
Matches: 35, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
36 29 0.83
37 6 0.17
ACGTcount: A:0.27, C:0.55, G:0.01, T:0.16
Consensus pattern (37 bp):
ACCTACTCACCTACTCACCTACCACCGACCACCTACC
Left flanking sequence: Indices 39167 -- 39666
GGTGCCCCCGGCATTGTTGATGTCTTTGTACAACGGGTTGTGGCGCTGGGCTTGCAGCTCCCTCA
CGGTGATCTTCCCCATGGTTGTGGTAGGAGATGCTCATCGCGGAGAAATTTAGGTGTGTGGTGCG
GGCTCGTGACCAGACGCGAGAGATAAGGTGAGAGAAGGGAGTGGGTGGGAGGTGGTGTTGGGTAG
AAGTAGGGATAGTTTCGGTGGGTGCGATGATTATGGGTTGTGATTTATGATGGTATTGCTTTCAA
ACCATGGTTTGGTGGTTGCCCTGGTTTGATGGTTGCCCTGTTAATTATGGTAATACTCTGTACCA
ATGTTCTAATGCGAGCCTCGTGAACGATGATCTGACCCGATCTCTGTTTAACTGATCCATTGGTG
AATGACCATTAGTAGTTCTAGTGGGTTAGGCTACAAGATATCCCGAGCCCACCCCTCTTACCACG
ACAACAACACCGCTACCTCATTCCTTATCTTAACTACACACACTA
Right flanking sequence: Indices 39740 -- 40239
CCCCAACTTAATCAAGCTGACTCACGATCAACTCGTGGGTCGCTGCTACGGGGAGCCCCACCACG
TTGAAGTAGTCTCCCTCGATCGCGTCAAACAAGAGAGCCCCCTTCTCCTGGTACTTGAACCCGCC
CGCAGCGTCCAACCCCTCTCCGCTCTCAACGTACCCCTCGATCCACGCCTGGTAAATGCCCTGGT
TGAACCGGAGCGTCGTGGGCACCACCTTCGTCACGAGCGGCTTGTCCCCCACCTTGACCGTGACC
GCGCTCACCACGCGAATCGTGCCCACTTGCTGGTACTCGGCAATCATTTCCCGCTGGCGCTCCCG
GGTGGTGGGCTTCTCCCGAACCGCCCCGTCGTAGTCAATCACGGTATCGCAGCAGATAAGCACCA
GGTCCAGGGCCTTCCCCGCAGCCACAATCGCCTCGGCCTTGTTCCGACAGGTCGCAGCAACGTAC
TCGTCGACCGTCAACCCCTGCTTCGGAAGATCCTCGGCGTAGTTC
Found at i:39721 original size:29 final size:28
Alignment explanation
Indices: 39667--39739 Score: 110
Period size: 29 Copynumber: 2.5 Consensus size: 28
39657 ACACACACTA
39667 ACCTACTCACCTACTCACCTACCACCGACC
1 ACCTAC-CACCTAC-CACCTACCACCGACC
*
39697 ACCTACCACCTACCACCTACTCACCTACC
1 ACCTACCACCTACCACCTAC-CACCGACC
39726 ACCTACCACCTACC
1 ACCTACCACCTACC
39740 CCCCAACTTA
Statistics
Matches: 41, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
28 7 0.17
29 28 0.68
30 6 0.15
ACGTcount: A:0.27, C:0.55, G:0.01, T:0.16
Consensus pattern (28 bp):
ACCTACCACCTACCACCTACCACCGACC
Left flanking sequence: Indices 39167 -- 39666
GGTGCCCCCGGCATTGTTGATGTCTTTGTACAACGGGTTGTGGCGCTGGGCTTGCAGCTCCCTCA
CGGTGATCTTCCCCATGGTTGTGGTAGGAGATGCTCATCGCGGAGAAATTTAGGTGTGTGGTGCG
GGCTCGTGACCAGACGCGAGAGATAAGGTGAGAGAAGGGAGTGGGTGGGAGGTGGTGTTGGGTAG
AAGTAGGGATAGTTTCGGTGGGTGCGATGATTATGGGTTGTGATTTATGATGGTATTGCTTTCAA
ACCATGGTTTGGTGGTTGCCCTGGTTTGATGGTTGCCCTGTTAATTATGGTAATACTCTGTACCA
ATGTTCTAATGCGAGCCTCGTGAACGATGATCTGACCCGATCTCTGTTTAACTGATCCATTGGTG
AATGACCATTAGTAGTTCTAGTGGGTTAGGCTACAAGATATCCCGAGCCCACCCCTCTTACCACG
ACAACAACACCGCTACCTCATTCCTTATCTTAACTACACACACTA
Right flanking sequence: Indices 39740 -- 40239
CCCCAACTTAATCAAGCTGACTCACGATCAACTCGTGGGTCGCTGCTACGGGGAGCCCCACCACG
TTGAAGTAGTCTCCCTCGATCGCGTCAAACAAGAGAGCCCCCTTCTCCTGGTACTTGAACCCGCC
CGCAGCGTCCAACCCCTCTCCGCTCTCAACGTACCCCTCGATCCACGCCTGGTAAATGCCCTGGT
TGAACCGGAGCGTCGTGGGCACCACCTTCGTCACGAGCGGCTTGTCCCCCACCTTGACCGTGACC
GCGCTCACCACGCGAATCGTGCCCACTTGCTGGTACTCGGCAATCATTTCCCGCTGGCGCTCCCG
GGTGGTGGGCTTCTCCCGAACCGCCCCGTCGTAGTCAATCACGGTATCGCAGCAGATAAGCACCA
GGTCCAGGGCCTTCCCCGCAGCCACAATCGCCTCGGCCTTGTTCCGACAGGTCGCAGCAACGTAC
TCGTCGACCGTCAACCCCTGCTTCGGAAGATCCTCGGCGTAGTTC
Found at i:39736 original size:22 final size:22
Alignment explanation
Indices: 39667--39738 Score: 119
Period size: 22 Copynumber: 3.3 Consensus size: 22
39657 ACACACACTA
39667 ACCTACTCACCTACTCACCTACC
1 ACCTACTCACCTAC-CACCTACC
*
39690 ACCGAC-CACCTACCACCTACC
1 ACCTACTCACCTACCACCTACC
39711 ACCTACTCACCTACCACCTACC
1 ACCTACTCACCTACCACCTACC
39733 ACCTAC
1 ACCTAC
39739 CCCCCAACTT
Statistics
Matches: 46, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
21 13 0.28
22 28 0.61
23 5 0.11
ACGTcount: A:0.28, C:0.54, G:0.01, T:0.17
Consensus pattern (22 bp):
ACCTACTCACCTACCACCTACC
Left flanking sequence: Indices 39167 -- 39666
GGTGCCCCCGGCATTGTTGATGTCTTTGTACAACGGGTTGTGGCGCTGGGCTTGCAGCTCCCTCA
CGGTGATCTTCCCCATGGTTGTGGTAGGAGATGCTCATCGCGGAGAAATTTAGGTGTGTGGTGCG
GGCTCGTGACCAGACGCGAGAGATAAGGTGAGAGAAGGGAGTGGGTGGGAGGTGGTGTTGGGTAG
AAGTAGGGATAGTTTCGGTGGGTGCGATGATTATGGGTTGTGATTTATGATGGTATTGCTTTCAA
ACCATGGTTTGGTGGTTGCCCTGGTTTGATGGTTGCCCTGTTAATTATGGTAATACTCTGTACCA
ATGTTCTAATGCGAGCCTCGTGAACGATGATCTGACCCGATCTCTGTTTAACTGATCCATTGGTG
AATGACCATTAGTAGTTCTAGTGGGTTAGGCTACAAGATATCCCGAGCCCACCCCTCTTACCACG
ACAACAACACCGCTACCTCATTCCTTATCTTAACTACACACACTA
Right flanking sequence: Indices 39739 -- 40238
CCCCCAACTTAATCAAGCTGACTCACGATCAACTCGTGGGTCGCTGCTACGGGGAGCCCCACCAC
GTTGAAGTAGTCTCCCTCGATCGCGTCAAACAAGAGAGCCCCCTTCTCCTGGTACTTGAACCCGC
CCGCAGCGTCCAACCCCTCTCCGCTCTCAACGTACCCCTCGATCCACGCCTGGTAAATGCCCTGG
TTGAACCGGAGCGTCGTGGGCACCACCTTCGTCACGAGCGGCTTGTCCCCCACCTTGACCGTGAC
CGCGCTCACCACGCGAATCGTGCCCACTTGCTGGTACTCGGCAATCATTTCCCGCTGGCGCTCCC
GGGTGGTGGGCTTCTCCCGAACCGCCCCGTCGTAGTCAATCACGGTATCGCAGCAGATAAGCACC
AGGTCCAGGGCCTTCCCCGCAGCCACAATCGCCTCGGCCTTGTTCCGACAGGTCGCAGCAACGTA
CTCGTCGACCGTCAACCCCTGCTTCGGAAGATCCTCGGCGTAGTT
Found at i:43874 original size:12 final size:12
Alignment explanation
Indices: 43857--43944 Score: 79
Period size: 12 Copynumber: 7.1 Consensus size: 12
43847 TATGTTAATG
43857 TAAGGATCGACT
1 TAAGGATCGACT
*
43869 TAAGGATTGACT
1 TAAGGATCGACT
*
43881 TGATGGATTC-ACT
1 T-AAGGA-TCGACT
*
43894 TGAAGGATTGACT
1 T-AAGGATCGACT
*
43907 GGAAGGATCGACT
1 -TAAGGATCGACT
* *
43920 GAGGGATCGACT
1 TAAGGATCGACT
43932 TAAGGATCGACT
1 TAAGGATCGACT
43944 T
1 T
43945 CATGGACTAA
Statistics
Matches: 62, Mismatches: 10, Indels: 8
0.77 0.12 0.10
Matches are distributed among these distances:
12 35 0.56
13 26 0.42
14 1 0.02
ACGTcount: A:0.30, C:0.14, G:0.30, T:0.27
Consensus pattern (12 bp):
TAAGGATCGACT
Left flanking sequence: Indices 43357 -- 43856
AACGGTGACTTGTTCACCAAGCACCCGTTGGTCCGCGTCCACCCGGTGACCGGGGAGAAGCTGTT
GTGGTTTGTGCCCGGGTTCACCCAGAGAGTGGATGGGGTCAAGCGCCAGGAGTCGGACGCCATTC
TCAACTTCCTTGTGGACCATGTGCAAAACAACCCCGAGTTCCAGGTGAGAGCCCTCCACCGTGGT
GGAGACTCTAGACTGGTGATTGCCTGGGACAACCGGATTCTCTTGCACCTGGCCACATTGGACTT
TTTGAGACACGAGACGGGCCACCGCCACCACTTCCGGATCACGGTGTTGGGAGAGAAGCCTTACA
ACGAGGTCATTGGCGACGGAGACGGTAACAAGGACGCGATCCCCAAGAAGGAGGATATCGCCCAC
GAGGAGAGAAAGTTGGAGTCTGTGGTGGACGGCAAAACCAAATCTGGTGAAGTTGTATAGACTAT
ACAGAACGAAAGACAAGCACCATTAAGCTATCACATATGTTAATG
Right flanking sequence: Indices 43945 -- 44444
CATGGACTAAACTTGAAATTCAACTACTTCTTTACCACCCAAATAGGCAATTGCGTCGATTTGCA
GCCATACACGTTACTACTGTTTCTCGTTTCTCGTTTCCGTTTCCCGTTTCTCGTTTCTCGTTTTC
CGTTTGTTTCTCCGTTTCTCTATCATATATTACAAACCATGCTTATTATTAATCTTCGTCGAGTC
GTACCGGCTACTGGAAGGTGGCCGGGGAAAAATGGGGCACCCGCGGGCTGCCCAAGTCCAAGTTT
GGCCGGGCCTCCACTTCCTCCGGGATCGTCGGCGTCTGGGTGTTGAACCGAGGCGGGTGGTCAAA
GTCGTACAGGGCCAAGTCGCTGAAGATCGTGCTCGGGTTGAGCATGTCCGCCAGGTACTCGGGCT
TCGGGTCCACCGGGGGGAATGCCAGCAGCGCCGCCGGCAAGTCAAACAGCAGATCCAGAAGCACC
AGTTCCGGTCGCGTGAGCCCCGGACGTTGCGAGAACTGGTCCATG
Found at i:43894 original size:13 final size:13
Alignment explanation
Indices: 43866--43914 Score: 55
Period size: 13 Copynumber: 3.8 Consensus size: 13
43856 GTAAGGATCG
*
43866 ACTT-AAGGATTG
1 ACTTGAAGGATTC
*
43878 ACTTGATGGATTC
1 ACTTGAAGGATTC
*
43891 ACTTGAAGGATTG
1 ACTTGAAGGATTC
*
43904 ACTGGAAGGAT
1 ACTTGAAGGAT
43915 CGACTGAGGG
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
12 4 0.13
13 27 0.87
ACGTcount: A:0.31, C:0.10, G:0.29, T:0.31
Consensus pattern (13 bp):
ACTTGAAGGATTC
Left flanking sequence: Indices 43366 -- 43865
TTGTTCACCAAGCACCCGTTGGTCCGCGTCCACCCGGTGACCGGGGAGAAGCTGTTGTGGTTTGT
GCCCGGGTTCACCCAGAGAGTGGATGGGGTCAAGCGCCAGGAGTCGGACGCCATTCTCAACTTCC
TTGTGGACCATGTGCAAAACAACCCCGAGTTCCAGGTGAGAGCCCTCCACCGTGGTGGAGACTCT
AGACTGGTGATTGCCTGGGACAACCGGATTCTCTTGCACCTGGCCACATTGGACTTTTTGAGACA
CGAGACGGGCCACCGCCACCACTTCCGGATCACGGTGTTGGGAGAGAAGCCTTACAACGAGGTCA
TTGGCGACGGAGACGGTAACAAGGACGCGATCCCCAAGAAGGAGGATATCGCCCACGAGGAGAGA
AAGTTGGAGTCTGTGGTGGACGGCAAAACCAAATCTGGTGAAGTTGTATAGACTATACAGAACGA
AAGACAAGCACCATTAAGCTATCACATATGTTAATGTAAGGATCG
Right flanking sequence: Indices 43915 -- 44414
CGACTGAGGGATCGACTTAAGGATCGACTTCATGGACTAAACTTGAAATTCAACTACTTCTTTAC
CACCCAAATAGGCAATTGCGTCGATTTGCAGCCATACACGTTACTACTGTTTCTCGTTTCTCGTT
TCCGTTTCCCGTTTCTCGTTTCTCGTTTTCCGTTTGTTTCTCCGTTTCTCTATCATATATTACAA
ACCATGCTTATTATTAATCTTCGTCGAGTCGTACCGGCTACTGGAAGGTGGCCGGGGAAAAATGG
GGCACCCGCGGGCTGCCCAAGTCCAAGTTTGGCCGGGCCTCCACTTCCTCCGGGATCGTCGGCGT
CTGGGTGTTGAACCGAGGCGGGTGGTCAAAGTCGTACAGGGCCAAGTCGCTGAAGATCGTGCTCG
GGTTGAGCATGTCCGCCAGGTACTCGGGCTTCGGGTCCACCGGGGGGAATGCCAGCAGCGCCGCC
GGCAAGTCAAACAGCAGATCCAGAAGCACCAGTTCCGGTCGCGTG
Found at i:43914 original size:26 final size:26
Alignment explanation
Indices: 43858--43944 Score: 76
Period size: 26 Copynumber: 3.5 Consensus size: 26
43848 ATGTTAATGT
*
43858 AAGGA-TCGACTTAAGGATTGACTTG
1 AAGGATTCGACTTAAGGATTGACTGG
*
43883 ATGGATTC-ACTTGAAGGATTGACTGG
1 AAGGATTCGACTT-AAGGATTGACTGG
* * * *
43909 AAGGA-TCGACTGAGGGATCGACT-T
1 AAGGATTCGACTTAAGGATTGACTGG
43933 AAGGA-TCGACTT
1 AAGGATTCGACTT
43945 CATGGACTAA
Statistics
Matches: 51, Mismatches: 8, Indels: 7
0.77 0.12 0.11
Matches are distributed among these distances:
24 11 0.22
25 19 0.37
26 21 0.41
ACGTcount: A:0.30, C:0.14, G:0.30, T:0.26
Consensus pattern (26 bp):
AAGGATTCGACTTAAGGATTGACTGG
Left flanking sequence: Indices 43358 -- 43857
ACGGTGACTTGTTCACCAAGCACCCGTTGGTCCGCGTCCACCCGGTGACCGGGGAGAAGCTGTTG
TGGTTTGTGCCCGGGTTCACCCAGAGAGTGGATGGGGTCAAGCGCCAGGAGTCGGACGCCATTCT
CAACTTCCTTGTGGACCATGTGCAAAACAACCCCGAGTTCCAGGTGAGAGCCCTCCACCGTGGTG
GAGACTCTAGACTGGTGATTGCCTGGGACAACCGGATTCTCTTGCACCTGGCCACATTGGACTTT
TTGAGACACGAGACGGGCCACCGCCACCACTTCCGGATCACGGTGTTGGGAGAGAAGCCTTACAA
CGAGGTCATTGGCGACGGAGACGGTAACAAGGACGCGATCCCCAAGAAGGAGGATATCGCCCACG
AGGAGAGAAAGTTGGAGTCTGTGGTGGACGGCAAAACCAAATCTGGTGAAGTTGTATAGACTATA
CAGAACGAAAGACAAGCACCATTAAGCTATCACATATGTTAATGT
Right flanking sequence: Indices 43945 -- 44444
CATGGACTAAACTTGAAATTCAACTACTTCTTTACCACCCAAATAGGCAATTGCGTCGATTTGCA
GCCATACACGTTACTACTGTTTCTCGTTTCTCGTTTCCGTTTCCCGTTTCTCGTTTCTCGTTTTC
CGTTTGTTTCTCCGTTTCTCTATCATATATTACAAACCATGCTTATTATTAATCTTCGTCGAGTC
GTACCGGCTACTGGAAGGTGGCCGGGGAAAAATGGGGCACCCGCGGGCTGCCCAAGTCCAAGTTT
GGCCGGGCCTCCACTTCCTCCGGGATCGTCGGCGTCTGGGTGTTGAACCGAGGCGGGTGGTCAAA
GTCGTACAGGGCCAAGTCGCTGAAGATCGTGCTCGGGTTGAGCATGTCCGCCAGGTACTCGGGCT
TCGGGTCCACCGGGGGGAATGCCAGCAGCGCCGCCGGCAAGTCAAACAGCAGATCCAGAAGCACC
AGTTCCGGTCGCGTGAGCCCCGGACGTTGCGAGAACTGGTCCATG
Found at i:44040 original size:7 final size:7
Alignment explanation
Indices: 44028--44072 Score: 74
Period size: 7 Copynumber: 6.6 Consensus size: 7
44018 CGTTACTACT
44028 GTTTCTC
1 GTTTCTC
44035 GTTTCTC
1 GTTTCTC
44042 GTTTC-C
1 GTTTCTC
*
44048 GTTTCCC
1 GTTTCTC
44055 GTTTCTC
1 GTTTCTC
44062 GTTTCTC
1 GTTTCTC
44069 GTTT
1 GTTT
44073 TCCGTTTGTT
Statistics
Matches: 36, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
6 6 0.17
7 30 0.83
ACGTcount: A:0.00, C:0.29, G:0.16, T:0.56
Consensus pattern (7 bp):
GTTTCTC
Left flanking sequence: Indices 43528 -- 44027
CAGGTGAGAGCCCTCCACCGTGGTGGAGACTCTAGACTGGTGATTGCCTGGGACAACCGGATTCT
CTTGCACCTGGCCACATTGGACTTTTTGAGACACGAGACGGGCCACCGCCACCACTTCCGGATCA
CGGTGTTGGGAGAGAAGCCTTACAACGAGGTCATTGGCGACGGAGACGGTAACAAGGACGCGATC
CCCAAGAAGGAGGATATCGCCCACGAGGAGAGAAAGTTGGAGTCTGTGGTGGACGGCAAAACCAA
ATCTGGTGAAGTTGTATAGACTATACAGAACGAAAGACAAGCACCATTAAGCTATCACATATGTT
AATGTAAGGATCGACTTAAGGATTGACTTGATGGATTCACTTGAAGGATTGACTGGAAGGATCGA
CTGAGGGATCGACTTAAGGATCGACTTCATGGACTAAACTTGAAATTCAACTACTTCTTTACCAC
CCAAATAGGCAATTGCGTCGATTTGCAGCCATACACGTTACTACT
Right flanking sequence: Indices 44073 -- 44572
TCCGTTTGTTTCTCCGTTTCTCTATCATATATTACAAACCATGCTTATTATTAATCTTCGTCGAG
TCGTACCGGCTACTGGAAGGTGGCCGGGGAAAAATGGGGCACCCGCGGGCTGCCCAAGTCCAAGT
TTGGCCGGGCCTCCACTTCCTCCGGGATCGTCGGCGTCTGGGTGTTGAACCGAGGCGGGTGGTCA
AAGTCGTACAGGGCCAAGTCGCTGAAGATCGTGCTCGGGTTGAGCATGTCCGCCAGGTACTCGGG
CTTCGGGTCCACCGGGGGGAATGCCAGCAGCGCCGCCGGCAAGTCAAACAGCAGATCCAGAAGCA
CCAGTTCCGGTCGCGTGAGCCCCGGACGTTGCGAGAACTGGTCCATGTTCATCTGGGTGAGAGGG
TTGGGTTGGGTCCGCTGCGCCTGCGGGGCGTACGGGTTCAGCAGCGGCTTTTCGATGAAGAGAGT
GTCTTCGTTGTCGAGCAGCGCCAGGCCCACAAGCGGGAACAACGG
Found at i:44058 original size:27 final size:25
Alignment explanation
Indices: 44027--44094 Score: 93
Period size: 27 Copynumber: 2.6 Consensus size: 25
44017 ACGTTACTAC
44027 TGTTTCTCGTTTCTCG-TTTCCGTT
1 TGTTTCTCGTTTCTCGTTTTCCGTT
44051 TCCCGTTTCTCGTTTCTCGTTTTCCGTT
1 T---GTTTCTCGTTTCTCGTTTTCCGTT
44079 TGTTTCTCCGTTTCTC
1 TGTTTCT-CGTTTCTC
44095 TATCATATAT
Statistics
Matches: 39, Mismatches: 0, Indels: 8
0.83 0.00 0.17
Matches are distributed among these distances:
24 1 0.03
25 6 0.15
26 8 0.21
27 15 0.38
28 9 0.23
ACGTcount: A:0.00, C:0.29, G:0.15, T:0.56
Consensus pattern (25 bp):
TGTTTCTCGTTTCTCGTTTTCCGTT
Left flanking sequence: Indices 43527 -- 44026
CCAGGTGAGAGCCCTCCACCGTGGTGGAGACTCTAGACTGGTGATTGCCTGGGACAACCGGATTC
TCTTGCACCTGGCCACATTGGACTTTTTGAGACACGAGACGGGCCACCGCCACCACTTCCGGATC
ACGGTGTTGGGAGAGAAGCCTTACAACGAGGTCATTGGCGACGGAGACGGTAACAAGGACGCGAT
CCCCAAGAAGGAGGATATCGCCCACGAGGAGAGAAAGTTGGAGTCTGTGGTGGACGGCAAAACCA
AATCTGGTGAAGTTGTATAGACTATACAGAACGAAAGACAAGCACCATTAAGCTATCACATATGT
TAATGTAAGGATCGACTTAAGGATTGACTTGATGGATTCACTTGAAGGATTGACTGGAAGGATCG
ACTGAGGGATCGACTTAAGGATCGACTTCATGGACTAAACTTGAAATTCAACTACTTCTTTACCA
CCCAAATAGGCAATTGCGTCGATTTGCAGCCATACACGTTACTAC
Right flanking sequence: Indices 44095 -- 44594
TATCATATATTACAAACCATGCTTATTATTAATCTTCGTCGAGTCGTACCGGCTACTGGAAGGTG
GCCGGGGAAAAATGGGGCACCCGCGGGCTGCCCAAGTCCAAGTTTGGCCGGGCCTCCACTTCCTC
CGGGATCGTCGGCGTCTGGGTGTTGAACCGAGGCGGGTGGTCAAAGTCGTACAGGGCCAAGTCGC
TGAAGATCGTGCTCGGGTTGAGCATGTCCGCCAGGTACTCGGGCTTCGGGTCCACCGGGGGGAAT
GCCAGCAGCGCCGCCGGCAAGTCAAACAGCAGATCCAGAAGCACCAGTTCCGGTCGCGTGAGCCC
CGGACGTTGCGAGAACTGGTCCATGTTCATCTGGGTGAGAGGGTTGGGTTGGGTCCGCTGCGCCT
GCGGGGCGTACGGGTTCAGCAGCGGCTTTTCGATGAAGAGAGTGTCTTCGTTGTCGAGCAGCGCC
AGGCCCACAAGCGGGAACAACGGGAACATCCGGTCCACCATATCG
Found at i:44807 original size:9 final size:9
Alignment explanation
Indices: 44793--44822 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
44783 GTCAAACCCT
44793 AGCGGGTTG
1 AGCGGGTTG
44802 AGCGGGTTG
1 AGCGGGTTG
*
44811 AGCGAGTTG
1 AGCGGGTTG
44820 AGC
1 AGC
44823 TGGCCGTTCT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.17, C:0.13, G:0.50, T:0.20
Consensus pattern (9 bp):
AGCGGGTTG
Left flanking sequence: Indices 44293 -- 44792
AGATCGTGCTCGGGTTGAGCATGTCCGCCAGGTACTCGGGCTTCGGGTCCACCGGGGGGAATGCC
AGCAGCGCCGCCGGCAAGTCAAACAGCAGATCCAGAAGCACCAGTTCCGGTCGCGTGAGCCCCGG
ACGTTGCGAGAACTGGTCCATGTTCATCTGGGTGAGAGGGTTGGGTTGGGTCCGCTGCGCCTGCG
GGGCGTACGGGTTCAGCAGCGGCTTTTCGATGAAGAGAGTGTCTTCGTTGTCGAGCAGCGCCAGG
CCCACAAGCGGGAACAACGGGAACATCCGGTCCACCATATCGAGCTCCAGGGGCGCCAAATACAG
CTGCCCGTCGGGCCCAATCGTGCCCAGGCCCATGCCTATGCCCTGGAGGGGCTGCGACATCGGAG
GCTGCGACTCGGTCGTCAGGGGAGCCGCCAGGAGGGAGACCGGGGTCTCCAGAGCCAGCGAGTCG
CCACCCTTGGTGGCGGTGGTCAGCATGTACTCCTGGTCAAACCCT
Right flanking sequence: Indices 44823 -- 45322
TGGCCGTTCTGGGGCACGGCCGGTGTCGGAGGCGCGATCCCCAGGCCCAACGAGCTGTCGAAACT
CGTGAGATCGGGCTCCATGTTGGTGGGGCGGCCCTGCCCGTTGCCGTTGCGCGGGGTGGTCTCGC
GACTGAACAAGTCAAACATCCCCAGCACGTAGTACGGGAGAGCCACGTCCTCGACGATGTACTGG
TTCTTCTGCTCGCCCGGGCCCGCCATCGGGGCCATCCCGGAGAGCAGCAGCTGCGACAGCACCGC
CGGTATCAGCACTTGCAGCAGCATCAGCGCCAGCAGGCCCTTGTCGGCCAACTTCTTTTTCAGCT
TGCAGGTGCAGTGTGTCAACGGCTTGTGGCAACCGCAGTTGGCGGAGTGGTTTTTCTTCTTGCCA
CAGGTGCAATTGGTGTGGAGGTTTTTTGTTTTGCGCTGCTCGCGGCAGTGCTGGCACTGGGAGGC
CGGGCGGCCCTTGGGCTTGATCATGGTGAGCGGCTGGTCGGTGTG
Found at i:45681 original size:15 final size:16
Alignment explanation
Indices: 45661--45705 Score: 74
Period size: 15 Copynumber: 2.9 Consensus size: 16
45651 AAAGCGGGCG
45661 AAAGCGGGAGTGGCT-
1 AAAGCGGGAGTGGCTA
45676 AAAGCGGGAGTGGCTA
1 AAAGCGGGAGTGGCTA
*
45692 AAAGTGGGAGTGGC
1 AAAGCGGGAGTGGC
45706 GAGAACGGGA
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
15 15 0.54
16 13 0.46
ACGTcount: A:0.29, C:0.11, G:0.47, T:0.13
Consensus pattern (16 bp):
AAAGCGGGAGTGGCTA
Left flanking sequence: Indices 45161 -- 45660
TGTCAACGGCTTGTGGCAACCGCAGTTGGCGGAGTGGTTTTTCTTCTTGCCACAGGTGCAATTGG
TGTGGAGGTTTTTTGTTTTGCGCTGCTCGCGGCAGTGCTGGCACTGGGAGGCCGGGCGGCCCTTG
GGCTTGATCATGGTGAGCGGCTGGTCGGTGTGGGTGCACAGCGTGACCCGGTGGCCGCGGATGCA
CCGCTCGCAGGCGTACTTGACGCCGTTAATGACAACCATGGGGGTTAGTGGGGTGGCTGAGTGAG
GTGGCTAAGTGAATTTATGGTACCGTGAGGTACGGAAAGGCTTGAAAATGAGCTGAAGCCGGGTT
AAACGGAAACCAGAGAGTGGACTGGAAACCGATGGGGAACCGATGGGAAAGGGTTATGAGTCGGA
AACCTTTTTTCGTGCAAGTTTCGACTGCAACCACGGAATTAGCGTCTGTTTTTCCGGGAGGGTGT
TGGTTATACCACTAGCGAGTCGCAAAAACCACTCAAAAGCGGGCG
Right flanking sequence: Indices 45706 -- 46205
GAGAACGGGAAGACGGTAATCTCACGAGACACTCGACTAAACACCAGTAAACGGGTCGAAGGGGC
TTAACACCTGATTTCAACCGGTGGTGCAAGGATATACGGGGCAACGAGACCAACCAAGTGCTCCA
AACAGCTAAACCTCGCGTGAAAACGGATGGGAGGCAGCTAAAAAACGCCGGAGACCACTAGCTGT
GCACCAGCGGACTCGAACAGACAAAAAGGACAGCCAACCAGGGGTCAGAAAGTCCACTACTAGCC
GTCGCAAACGAAAAGCTAGTATCAGGTACGGGGGAAGGGGCGACCGGGAACGGGGTGCGCTAAGC
AGTAAACACACAACGGGGCGCGGAGGCGGTCGCTAGTCCGGAGAAGAATCGTGGAGTGGGGCACT
AGTGATATCCAGGATAGCGGCTAGAAAAAATGTCCTGCTAGATGGGCTTCGGGTGTGCATGATCA
TCACGTGAGGTGGCGGGCACGTAACCGGGGCGTTCGCCGTCCGCT
Found at i:47893 original size:11 final size:11
Alignment explanation
Indices: 47877--47918 Score: 75
Period size: 11 Copynumber: 3.8 Consensus size: 11
47867 GAAGGAACAC
*
47877 GGCGTAGTGGG
1 GGCGTAGTAGG
47888 GGCGTAGTAGG
1 GGCGTAGTAGG
47899 GGCGTAGTAGG
1 GGCGTAGTAGG
47910 GGCGTAGTA
1 GGCGTAGTA
47919 CATGATCCTG
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
11 30 1.00
ACGTcount: A:0.17, C:0.10, G:0.55, T:0.19
Consensus pattern (11 bp):
GGCGTAGTAGG
Left flanking sequence: Indices 47377 -- 47876
TCAATTCTGGTTGCATGAGTAGCTGCAAAACACCCCCAGAATGTCACGCAACCGAAGAGGACGGC
AGGGCCATTCTCTGCCGCTGCCCCCACGCCCACCACGGAACTCCGTGGAATCTCACCCTGCTGCG
CTTGACACCTGTCAACCCTCGTAAACCGACGCAAGGGCATCGCCTTGCCCTAAACACCGAGCATT
CCGATGAGACAGGTGAAACGGGCTCCGGGTCCATACCCTCGTGGGCGGGGTTGCTGGAGGGTGGG
GTTGTTATCGGACGGCGCTCGTCGTACCGGTGCTGTGATTGGACGATTTTGCGGGCTCGATAAGA
TAACGGGCGTGGGCGGTCGCGGGCCGTGGACCGGCGCTGTTGGCTATCCGGGTGTCATTCGTGGT
GGGTTTGTCCGAACTGGCTGGATAAGGCCACTCCGCCTAATTTCTTAACTTGTCCCAAACGGGAC
ATTATCCCGATAATTCTCATTGTAGGTGCATTATCGAAGGAACAC
Right flanking sequence: Indices 47919 -- 48418
CATGATCCTGTCTCTGTTGTGTATCCGCTATTGTCTTGTGCCACTAGGGATTTTCCAATTGGACC
AAGGAGTTCTGGAGGTAACGTGAATGATTAGATGTCTCGGGGACGAAATGTCCTTAGCCTATTCT
CAAACTTTGAAATGTAAGAAGTACTTGTTGCTCAATTGAACGGCATATGAATCAAGAGCTTTAGT
GGGCCCAAGGAACTGAGATTAACGATGATCGTAGCAAATCAGATCGTCGTAGTATTTCAGATCGT
CGTAGTATTCCAGATCGTCGTAGTATTTCAGATCGTCGTAGTATTTCGATTGTCGTAGTATTTCA
GATCGTCGTAGTATTTCAGATCATCGTAGTATTTTCAAATTGTCATTCTAGCTCGTCACAGAGTT
CCTGTAGTTGTTTCTACCATAATACGTCGTGCTACCCACTACTTCATAATACCTCGTGCTACCCA
CTACCTCATTAAACCTCGTCTACCCCTACCTCACCCAATACCTCA
Found at i:48275 original size:18 final size:18
Alignment explanation
Indices: 48152--48277 Score: 218
Period size: 18 Copynumber: 7.1 Consensus size: 18
48142 TCGTAGCAAA
48152 TCAGATCGTCGTAGTATT
1 TCAGATCGTCGTAGTATT
48170 TCAGATCGTCGTAGTATT
1 TCAGATCGTCGTAGTATT
*
48188 CCAGATCGTCGTAGTATT
1 TCAGATCGTCGTAGTATT
48206 TCAGATCGTCGTAGTATT
1 TCAGATCGTCGTAGTATT
*
48224 TC-GATTGTCGTAGTATT
1 TCAGATCGTCGTAGTATT
48241 TCAGATCGTCGTAGTATT
1 TCAGATCGTCGTAGTATT
*
48259 TCAGATCATCGTAGTATT
1 TCAGATCGTCGTAGTATT
48277 T
1 T
48278 TCAAATTGTC
Statistics
Matches: 102, Mismatches: 5, Indels: 2
0.94 0.05 0.02
Matches are distributed among these distances:
17 16 0.16
18 86 0.84
ACGTcount: A:0.22, C:0.17, G:0.21, T:0.40
Consensus pattern (18 bp):
TCAGATCGTCGTAGTATT
Left flanking sequence: Indices 47652 -- 48151
CGCTCGTCGTACCGGTGCTGTGATTGGACGATTTTGCGGGCTCGATAAGATAACGGGCGTGGGCG
GTCGCGGGCCGTGGACCGGCGCTGTTGGCTATCCGGGTGTCATTCGTGGTGGGTTTGTCCGAACT
GGCTGGATAAGGCCACTCCGCCTAATTTCTTAACTTGTCCCAAACGGGACATTATCCCGATAATT
CTCATTGTAGGTGCATTATCGAAGGAACACGGCGTAGTGGGGGCGTAGTAGGGGCGTAGTAGGGG
CGTAGTACATGATCCTGTCTCTGTTGTGTATCCGCTATTGTCTTGTGCCACTAGGGATTTTCCAA
TTGGACCAAGGAGTTCTGGAGGTAACGTGAATGATTAGATGTCTCGGGGACGAAATGTCCTTAGC
CTATTCTCAAACTTTGAAATGTAAGAAGTACTTGTTGCTCAATTGAACGGCATATGAATCAAGAG
CTTTAGTGGGCCCAAGGAACTGAGATTAACGATGATCGTAGCAAA
Right flanking sequence: Indices 48278 -- 48777
TCAAATTGTCATTCTAGCTCGTCACAGAGTTCCTGTAGTTGTTTCTACCATAATACGTCGTGCTA
CCCACTACTTCATAATACCTCGTGCTACCCACTACCTCATTAAACCTCGTCTACCCCTACCTCAC
CCAATACCTCATGTCATTACTCTATATCTAAAGATTGCTCTTGAACGGCGGCGGCAACATCGGCT
CGTACACCCGCCCAAACAACTTGTCCTCGGGAATCGACCGGTTCATCCACTTCAAGTCCAAGTAC
GTCTCGTCCAACTGCGAGATCAGCGTCACCCCCAACAACCGCATGTTCATCTCCATCTCGTCCTT
GAGAATCTGGATCGCCTTGTAGACACCGTCGTCCCCGTAGGTCGACATCGCGTACAAGAACGGGC
GGCCAATGCCCACCCCCTTGGCCCCCAAGCAGATGGCCTTGAGAATGTCGCCGGCTCTCCGCACC
CCGCCGTCGACGTACACCTGGAACTTGTCGGTGTCCACGCCCCGC
Found at i:48358 original size:27 final size:27
Alignment explanation
Indices: 48326--48406 Score: 114
Period size: 27 Copynumber: 3.1 Consensus size: 27
48316 TTGTTTCTAC
* *
48326 CATAATACGTCGTGCTACCCACTACTT
1 CATAATACCTCGTGCTACCCACTACCT
48353 CATAATACCTCGTGCTACCCACTACCT
1 CATAATACCTCGTGCTACCCACTACCT
48380 CATTAA-ACCTCGT-CTACCC-CTACCT
1 CA-TAATACCTCGTGCTACCCACTACCT
48405 CA
1 CA
48407 CCCAATACCT
Statistics
Matches: 51, Mismatches: 2, Indels: 4
0.89 0.04 0.07
Matches are distributed among these distances:
25 8 0.16
26 6 0.12
27 34 0.67
28 3 0.06
ACGTcount: A:0.26, C:0.40, G:0.07, T:0.27
Consensus pattern (27 bp):
CATAATACCTCGTGCTACCCACTACCT
Left flanking sequence: Indices 47826 -- 48325
CGGGACATTATCCCGATAATTCTCATTGTAGGTGCATTATCGAAGGAACACGGCGTAGTGGGGGC
GTAGTAGGGGCGTAGTAGGGGCGTAGTACATGATCCTGTCTCTGTTGTGTATCCGCTATTGTCTT
GTGCCACTAGGGATTTTCCAATTGGACCAAGGAGTTCTGGAGGTAACGTGAATGATTAGATGTCT
CGGGGACGAAATGTCCTTAGCCTATTCTCAAACTTTGAAATGTAAGAAGTACTTGTTGCTCAATT
GAACGGCATATGAATCAAGAGCTTTAGTGGGCCCAAGGAACTGAGATTAACGATGATCGTAGCAA
ATCAGATCGTCGTAGTATTTCAGATCGTCGTAGTATTCCAGATCGTCGTAGTATTTCAGATCGTC
GTAGTATTTCGATTGTCGTAGTATTTCAGATCGTCGTAGTATTTCAGATCATCGTAGTATTTTCA
AATTGTCATTCTAGCTCGTCACAGAGTTCCTGTAGTTGTTTCTAC
Right flanking sequence: Indices 48407 -- 48906
CCCAATACCTCATGTCATTACTCTATATCTAAAGATTGCTCTTGAACGGCGGCGGCAACATCGGC
TCGTACACCCGCCCAAACAACTTGTCCTCGGGAATCGACCGGTTCATCCACTTCAAGTCCAAGTA
CGTCTCGTCCAACTGCGAGATCAGCGTCACCCCCAACAACCGCATGTTCATCTCCATCTCGTCCT
TGAGAATCTGGATCGCCTTGTAGACACCGTCGTCCCCGTAGGTCGACATCGCGTACAAGAACGGG
CGGCCAATGCCCACCCCCTTGGCCCCCAAGCAGATGGCCTTGAGAATGTCGCCGGCTCTCCGCAC
CCCGCCGTCGACGTACACCTGGAACTTGTCGGTGTCCACGCCCCGCTCCTTGAGGATGGGCATCA
ACTCCGCAAGCACCTGGATGGGCGGAGGCGCAAACTCGAGCTGGCGGCCCCCGTGGTTGGAAATG
ACAATTCCGTCCACGCCCGCGTCCACCGCGAGAAGCGCGTCCTCG
Found at i:48416 original size:27 final size:28
Alignment explanation
Indices: 48329--48417 Score: 96
Period size: 27 Copynumber: 3.3 Consensus size: 28
48319 TTTCTACCAT
* * *
48329 AATACGTCGTGCTACCCACTACTTCA-T
1 AATACCTCGTGCTACCCACTACCTCACC
**
48356 AATACCTCGTGCTACCCACTACCTCATT
1 AATACCTCGTGCTACCCACTACCTCACC
48384 AA-ACCTCGT-CTACCC-CTACCTCACCC
1 AATACCTCGTGCTACCCACTACCTCA-CC
48410 AATACCTC
1 AATACCTC
48418 ATGTCATTAC
Statistics
Matches: 55, Mismatches: 4, Indels: 6
0.85 0.06 0.09
Matches are distributed among these distances:
25 8 0.15
26 8 0.15
27 36 0.65
28 3 0.05
ACGTcount: A:0.26, C:0.42, G:0.07, T:0.26
Consensus pattern (28 bp):
AATACCTCGTGCTACCCACTACCTCACC
Left flanking sequence: Indices 47829 -- 48328
GACATTATCCCGATAATTCTCATTGTAGGTGCATTATCGAAGGAACACGGCGTAGTGGGGGCGTA
GTAGGGGCGTAGTAGGGGCGTAGTACATGATCCTGTCTCTGTTGTGTATCCGCTATTGTCTTGTG
CCACTAGGGATTTTCCAATTGGACCAAGGAGTTCTGGAGGTAACGTGAATGATTAGATGTCTCGG
GGACGAAATGTCCTTAGCCTATTCTCAAACTTTGAAATGTAAGAAGTACTTGTTGCTCAATTGAA
CGGCATATGAATCAAGAGCTTTAGTGGGCCCAAGGAACTGAGATTAACGATGATCGTAGCAAATC
AGATCGTCGTAGTATTTCAGATCGTCGTAGTATTCCAGATCGTCGTAGTATTTCAGATCGTCGTA
GTATTTCGATTGTCGTAGTATTTCAGATCGTCGTAGTATTTCAGATCATCGTAGTATTTTCAAAT
TGTCATTCTAGCTCGTCACAGAGTTCCTGTAGTTGTTTCTACCAT
Right flanking sequence: Indices 48418 -- 48917
ATGTCATTACTCTATATCTAAAGATTGCTCTTGAACGGCGGCGGCAACATCGGCTCGTACACCCG
CCCAAACAACTTGTCCTCGGGAATCGACCGGTTCATCCACTTCAAGTCCAAGTACGTCTCGTCCA
ACTGCGAGATCAGCGTCACCCCCAACAACCGCATGTTCATCTCCATCTCGTCCTTGAGAATCTGG
ATCGCCTTGTAGACACCGTCGTCCCCGTAGGTCGACATCGCGTACAAGAACGGGCGGCCAATGCC
CACCCCCTTGGCCCCCAAGCAGATGGCCTTGAGAATGTCGCCGGCTCTCCGCACCCCGCCGTCGA
CGTACACCTGGAACTTGTCGGTGTCCACGCCCCGCTCCTTGAGGATGGGCATCAACTCCGCAAGC
ACCTGGATGGGCGGAGGCGCAAACTCGAGCTGGCGGCCCCCGTGGTTGGAAATGACAATTCCGTC
CACGCCCGCGTCCACCGCGAGAAGCGCGTCCTCGACACACTGGAT
Found at i:52869 original size:19 final size:20
Alignment explanation
Indices: 52829--52872 Score: 63
Period size: 19 Copynumber: 2.2 Consensus size: 20
52819 GGACCAAGTC
*
52829 CGAGTTGAAGGTTTAGGACA
1 CGAGTTGAAGGCTTAGGACA
*
52849 CGAGTTG-AGGCTTAGGGCA
1 CGAGTTGAAGGCTTAGGACA
52868 CGAGT
1 CGAGT
52873 CCAAGTTGAG
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 15 0.68
20 7 0.32
ACGTcount: A:0.25, C:0.14, G:0.39, T:0.23
Consensus pattern (20 bp):
CGAGTTGAAGGCTTAGGACA
Left flanking sequence: Indices 52329 -- 52828
CGGCTCGGGGGGTCGCTGTTGCTTGCGTGCGTGGTGTTTGGGCGGTTGGCGGCGGACCAGGCGCT
GGCGTTTGCCATGGAGAAGTTGGCGGCCGGGCGGCTGGCGGCAGCGAGGCTCGACATGATCAACG
TGCACGTGGACCAGTCGTCGCGGCGGGTGGTGATTGACTTTGGCGAGAGCGGGGCGGGCGAGGGC
GAGAGTGGTGACAAGGGGGTGAACAAGCACGAGCGCAAGCCCGCGGAGCCGTTTGTCATCCCGGA
CAAGGAGTTCACGCTCGAGGAGATTGCCAAGCACAACACGCCCGGGGACTGCTGGTGCATCATCA
AGAACGTGGTGGTGGACTTGACGCAGTTTGCGAAGCACCATCCCGGCGGCGAGCACCTGATCACC
ACCTACGCGGGCCGTGACGCCACCGAGCTGTTTGTGATGTTGCACGCGGACAACTTTATTCTGAA
GTATGTGCCGAAGAACGTGCTTGGGGTGGTGAAGGGGACCAAGTC
Right flanking sequence: Indices 52873 -- 53372
CCAAGTTGAGGTTTAGTAATGAGACAAAAGAAGAGAGTAGGTAGAGAGTAGGCAGAGGGGTAGGC
AGGGTGAAATGGGAACTCAAGCTAGTGGTTGGTACTGTGACCATTTCTACCGGGAAACAAGACGT
TAGTGTTGGCTGTGTATTGCTAGTTGAGTGATTCGAGAGTGTGTGGTGGTTCATTTTGGTTGGCT
GTATTGCTAGTTCAATCGAGATTCGGATTGGAGAGGTTATAGTAGCTTTTCGTATTGGTTGACTG
CGATTGTCAGTGATTGTTCATCCTGGTTGGCTAAATATTGCTTGTTCAATTGGGTTGAATCGAAC
TGAAAATCTCAAGGGGCTGTTCATTTTAGTGGTAGCTCAATCGAGATTAGGGCTGGAAAGGTCGT
ATTCTGGTTCAATTGAGTTGGTTCGAACTGAATCTTAATGCGACTGTCCATTTTGGTTGGCTGTG
TTTCGCTGTTCAATTGAGTGGATTCGAAAACTCGTGGCCCTTCGA
Found at i:54629 original size:15 final size:15
Alignment explanation
Indices: 54609--54652 Score: 56
Period size: 15 Copynumber: 3.1 Consensus size: 15
54599 TCAAGGCGTG
54609 CCTCTGCCTACATTA
1 CCTCTGCCTACATTA
*
54624 CCTCTGTCTACATT-
1 CCTCTGCCTACATTA
*
54638 CC-CTGCCTCCATTA
1 CCTCTGCCTACATTA
54652 C
1 C
54653 GTACCTCGCT
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
13 9 0.36
14 3 0.12
15 13 0.52
ACGTcount: A:0.16, C:0.43, G:0.07, T:0.34
Consensus pattern (15 bp):
CCTCTGCCTACATTA
Left flanking sequence: Indices 54109 -- 54608
GTGTCTGGCTTGGTCTCCTCGTACCAGGACGGCGAGATGTAGCTGTCGTGGGACTGGAAAACCAC
TAGCACTGGCTTCCCGCTAGCCAACATAGCCCGTTGCGGGTTGGCCTTGGCGATGTGGGCAATGA
GAACGTGCTCGTCACCGCGCTGCTCGAGATGGAACGGGAAGTGGTTGGCCTGCAAGTCCTCCGTC
ACCACCGTGGCGAGCGGGTACTTCTCAATGAGGAACTGGACCTGTTGCCAGTCTCCTTCGTCATA
AGCTTTGGGGATGTACATTGGTGGCTACAAAGACATGAGCGGTTTAAGTAGTGGGCCCATTTGTC
ATCGTAAACTCCGTGATTCACAGTTTGTCAGAAGTGAGCGGGCTAGGCACGGCTGTGACTCGGGC
TCGTAAATGGGTCCGAATGTGTCAAACGGTTAGCGAGAAGTAGCGAACGCAGCTGAATAGTACGT
TGAGAGTTGACTAAGTGAGTAGAACCAGTCCATTCTCAAGGCGTG
Right flanking sequence: Indices 54653 -- 55152
GTACCTCGCTTGCTCATTTTCGGCTTTTCACATGGCCGCAAGTATCGTCTGATATTAGTCACCGT
CTAGCCTCGTAATCCATGCGACGCTGTCTATTACTCTATTATATGCTAATGCGAATGCTTGTCTT
CCAGAGACGGAGCCTGTTTTTCCACGTTGTACGAGTCCAGGTCAACGGTGACGTCCTCAGGCATC
ACAGGAACGTCGTCGGTGATCACCTCCGGGGGATCGTCGCGCAAATGCTCCTCGTCGTCCTTGGG
CTCGTCGGCGTAGATCCACTTCTTCATAAACTTGGTGAGCACCTGCGCTGTGAGCACCTGCTCGG
CCTGGTAGAGCACGAGCGGCACCAAAATGATACCCAACCGCGGGTTGTGGGCTCCGTACTGCGAC
GACACCAACGACACACCCAACGCGGCGGTCTTGGCCGGGCCACAGAGGAGAATGGCGACGGTGTC
GCGCTTGTTCCAGTAAAAGGGGCGGAGAAGCTTGTACCCGTAGGT
Found at i:56950 original size:13 final size:12
Alignment explanation
Indices: 56907--56954 Score: 78
Period size: 12 Copynumber: 3.9 Consensus size: 12
56897 GACGCAATTA
56907 ACCCCTAAACAT
1 ACCCCTAAACAT
*
56919 ACCCCTTAACAT
1 ACCCCTAAACAT
56931 ACCCCTAAACAT
1 ACCCCTAAACAT
56943 ACCCCCTAAACA
1 A-CCCCTAAACA
56955 CTGTCTCAGC
Statistics
Matches: 33, Mismatches: 2, Indels: 1
0.92 0.06 0.03
Matches are distributed among these distances:
12 23 0.70
13 10 0.30
ACGTcount: A:0.40, C:0.44, G:0.00, T:0.17
Consensus pattern (12 bp):
ACCCCTAAACAT
Left flanking sequence: Indices 56407 -- 56906
ACCGATCCGAAGTCACTATTCAGCCGTTTGATGAACAATCCGCGGGATCTGACCACGACGCGACG
TGACGCCACGGTTAGCACATGGAGGTTTTATAAACCTCGGCACGAACGCCACAGTAGGGCTTACT
CGGGGCTTAAAACGGTTGTGGCAGTTTGTGGAGCAGTTGGTGACGTGACCTCCGAAAAAGGAAAG
GTAGCCGAAGAGAGCGCTTTAGGAAATCGTTTCGGATGGGTAGAGGTGACGGTTGACGTGACGGG
GGTACGTGCGATAGTAAGGGGTATCTGCGGGGTTCTACTGTCTCTATTGTTAGAACGTGATAAGC
ATATGGCTATCGTATGAGACTCCGGAGTTATTTTGACAAATAGACACATGATCAACTCCACCACT
CCGACAATCGGTGAAAAGCCGTAAGTATTCCCCGCAGATTAACTGATACGCTCCAAAGCCTCGCC
CCGTGGTGTCTGGTGCCGTGAAAGATAACCATATCGACGCAATTA
Right flanking sequence: Indices 56955 -- 57454
CTGTCTCAGCACTTTCGGGGCAACCCCTGTTCCCACGAACTCTGTTTCACCCTACGCCCAGTCAC
TCTGTTCTCTATTCTCTATGCTGTGTATTGTCTACTCCTCGTCGCTGCCCTTGATGGCACCGCTC
GCCCATGTCACGTTCATCTGGTCGCCCAACCCCTTCTGAACTATCTCAAACTGCTCTTCCCAGCC
CTGCTGGTCCTTGTCGAGCCCCTGGTACTGCTTCACCGCCACCTCAAGCTCCTCCACCAGCGACA
CACCCAACACGATCGAGTCGACTCCTGAGCTCTCGGAGAAGGTCCGGGAAAGCGCGTATCTGGTG
GCCACTGTCGCCAACTCCTCTTCGGTAGTCTCGTAAAGCTTGTCAGCCACCTCCTGGACCCGCTT
CTTCAACGTGTCCGGCGCGGGGTGGAACGAATGCGTCGGCTGTCTCCGCAACAAACTCATCAGGA
GAATGGAGCTGTTGAACAAGTGCTGGACTCCCAAGGCTTTGAAGT
Found at i:72485 original size:11 final size:11
Alignment explanation
Indices: 72469--72505 Score: 65
Period size: 11 Copynumber: 3.4 Consensus size: 11
72459 GCGTAAACGA
72469 GTGCGACTGCG
1 GTGCGACTGCG
72480 GTGCGACTGCG
1 GTGCGACTGCG
*
72491 GTGCCACTGCG
1 GTGCGACTGCG
72502 GTGC
1 GTGC
72506 AACCGCAGCG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
11 25 1.00
ACGTcount: A:0.08, C:0.30, G:0.43, T:0.19
Consensus pattern (11 bp):
GTGCGACTGCG
Left flanking sequence: Indices 71969 -- 72468
TGGTGCGCTTCCTCCGTCGCACTGCCCTCCTCCTCCACGCCCCTCCCCTCCGCAACCGCAAAGCA
ATCGGTGAAAAGTGTGGTTTGCCTTGGGCCAACGCCCACTGAAACCACTCAAGAGACGTCCCAGC
ACAGTCTACGTTAGACGAATACACGCGCCGCGCCACATTCCGTGGTGACACGCGTGGGCCGGTGC
TAACCTAGACGGAATGCCCGAGGCGTGAGCTTTGGGTGCACCTCAACGGCACCACAAAAGCACCT
CACAAGCCGTCACAGACACCTCACAAACACCTAAGCGCACTTCACAAACCCTATCAGGTCATGTC
CAACGTGGTGCCACCAGGTTCCGTGATCGAGCCCACCGGCCGTGTCGGACCACGGGTGTCTGCGT
GCGTGCTCCAGCGTTTCTGTGTTTGTGCTACGGCAAGGACTACTACGGTTGTGTCGCGGCAGTGC
CACGATACGGCTGTCGAGTGGTGCATTGAAGTCACGCGTAAACGA
Right flanking sequence: Indices 72506 -- 73005
AACCGCAGCGAGCGGAGATGCGAAGCGCGATAAGGCGACGAGAGTAGTGCGAAGCAAGTGCAGTG
CGAGTGCCGAGCAAGTGCAGGACTGCACCAACGGGTCCACCAAGACCCCGTAGCTTTCGCCACCA
GCTGGACATTTCGCCCATTATTCATCAATACTAACCTACTAGGTAGCTTTACCAACCAGACCACC
GAATACTTGACCCTCACGAACAACACCCGGGACCCCCTCGCGTTCAAGGTCAAGACCACCGCCCC
CAAGTTATACTGCGTGCGTCCCAACGCCGGTCTCGTCGAGCCCGGTGAGGATGTCGAGATCCTGA
TCATTTTGCAGGGGTTCTCCCAGCCGTTGCCCGCTGACTACAAGTGCAAGGACAAGTTCTTGATT
GTGTCGCTCCCCGCGCCCGAGATCCGGGACCTGAGCCGAGTGCTGGACGAGTGGTCCCGCTTGGA
GCTGAAGCACGGCGACAAGCTTGTGTCCAAGAAGCTCAGAGTGGC
Found at i:73081 original size:15 final size:12
Alignment explanation
Indices: 73047--73086 Score: 62
Period size: 12 Copynumber: 3.3 Consensus size: 12
73037 TCCGACTACG
73047 GCCGGGACGACC
1 GCCGGGACGACC
73059 GCCGGGACGACC
1 GCCGGGACGACC
* *
73071 GCCGCGAGGACC
1 GCCGGGACGACC
73083 GCCG
1 GCCG
73087 CGACCGCGGC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
12 26 1.00
ACGTcount: A:0.15, C:0.42, G:0.42, T:0.00
Consensus pattern (12 bp):
GCCGGGACGACC
Left flanking sequence: Indices 72547 -- 73046
GAGTAGTGCGAAGCAAGTGCAGTGCGAGTGCCGAGCAAGTGCAGGACTGCACCAACGGGTCCACC
AAGACCCCGTAGCTTTCGCCACCAGCTGGACATTTCGCCCATTATTCATCAATACTAACCTACTA
GGTAGCTTTACCAACCAGACCACCGAATACTTGACCCTCACGAACAACACCCGGGACCCCCTCGC
GTTCAAGGTCAAGACCACCGCCCCCAAGTTATACTGCGTGCGTCCCAACGCCGGTCTCGTCGAGC
CCGGTGAGGATGTCGAGATCCTGATCATTTTGCAGGGGTTCTCCCAGCCGTTGCCCGCTGACTAC
AAGTGCAAGGACAAGTTCTTGATTGTGTCGCTCCCCGCGCCCGAGATCCGGGACCTGAGCCGAGT
GCTGGACGAGTGGTCCCGCTTGGAGCTGAAGCACGGCGACAAGCTTGTGTCCAAGAAGCTCAGAG
TGGCCTACAACGTCACCGACGACGGTGACGACGACTCCGACTACG
Right flanking sequence: Indices 73087 -- 73586
CGACCGCGGCTTGGCCGCTGCCGGCGGTGCTGGCGTCGGTGCTGCTGCTGGTGCTGCCGCCAGCC
GCTCGCGTGGCGACCGTGGTGACCGTGGCGACCGTGACGCCAACGGGCACACCGTGCTCAACCAG
GTGGACGACCGGTCGCGCGGGGTGGCCCAGGAGCCTCCCCAGCTGGCGTACCAGCAGCCCGCTGC
CCAGCAGCACCAGGCCCCCCCTCCCAGCCAGTACTCTGTGCCCCAGACCAACGGCCAGTCCGTCC
AGGGCGGCGACTACCAGCCGCAAAAGACCATCACCACAGAGCCCGTCCAGGGGATCTCTATACAG
TTGGCGGCGTTGTTGGCGCTCTTGGCGTTCCTCGCCGGATGGTTGTTGTTCTAAGTGGTCCCGAG
GGGCTTCTGGGTGGGTAGTGCCGGCTGACGGCTTGAAAGGATTGTTATCCCTCTCGTTTGTGTGG
GGATGTGTAAGCCTGTATTTTTTTAAGTAGCGTTGAATGGAGATG
Found at i:73175 original size:9 final size:9
Alignment explanation
Indices: 73157--73187 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
73147 CAGCCGCTCG
73157 CGTGGCGAC
1 CGTGGCGAC
*
73166 CGTGGTGAC
1 CGTGGCGAC
73175 CGTGGCGAC
1 CGTGGCGAC
73184 CGTG
1 CGTG
73188 ACGCCAACGG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.10, C:0.29, G:0.45, T:0.16
Consensus pattern (9 bp):
CGTGGCGAC
Left flanking sequence: Indices 72657 -- 73156
TCATCAATACTAACCTACTAGGTAGCTTTACCAACCAGACCACCGAATACTTGACCCTCACGAAC
AACACCCGGGACCCCCTCGCGTTCAAGGTCAAGACCACCGCCCCCAAGTTATACTGCGTGCGTCC
CAACGCCGGTCTCGTCGAGCCCGGTGAGGATGTCGAGATCCTGATCATTTTGCAGGGGTTCTCCC
AGCCGTTGCCCGCTGACTACAAGTGCAAGGACAAGTTCTTGATTGTGTCGCTCCCCGCGCCCGAG
ATCCGGGACCTGAGCCGAGTGCTGGACGAGTGGTCCCGCTTGGAGCTGAAGCACGGCGACAAGCT
TGTGTCCAAGAAGCTCAGAGTGGCCTACAACGTCACCGACGACGGTGACGACGACTCCGACTACG
GCCGGGACGACCGCCGGGACGACCGCCGCGAGGACCGCCGCGACCGCGGCTTGGCCGCTGCCGGC
GGTGCTGGCGTCGGTGCTGCTGCTGGTGCTGCCGCCAGCCGCTCG
Right flanking sequence: Indices 73188 -- 73687
ACGCCAACGGGCACACCGTGCTCAACCAGGTGGACGACCGGTCGCGCGGGGTGGCCCAGGAGCCT
CCCCAGCTGGCGTACCAGCAGCCCGCTGCCCAGCAGCACCAGGCCCCCCCTCCCAGCCAGTACTC
TGTGCCCCAGACCAACGGCCAGTCCGTCCAGGGCGGCGACTACCAGCCGCAAAAGACCATCACCA
CAGAGCCCGTCCAGGGGATCTCTATACAGTTGGCGGCGTTGTTGGCGCTCTTGGCGTTCCTCGCC
GGATGGTTGTTGTTCTAAGTGGTCCCGAGGGGCTTCTGGGTGGGTAGTGCCGGCTGACGGCTTGA
AAGGATTGTTATCCCTCTCGTTTGTGTGGGGATGTGTAAGCCTGTATTTTTTTAAGTAGCGTTGA
ATGGAGATGTTCACAGAAGTTGATGGTAGGTCGAGTTGGTAAAGAAGCTCACAGAAAGAGGTGAT
GGTAGGTCTACTGTGGAAGAGTCTAGTGTGGTAGATTCACGGTAG
Found at i:74945 original size:33 final size:33
Alignment explanation
Indices: 74885--74947 Score: 92
Period size: 33 Copynumber: 1.9 Consensus size: 33
74875 GCCACCAAGG
*
74885 CCAAGCCCAAGCCGGCGAAGGAAGCCAAGGTGA
1 CCAAGCCCAAGCCGGCGAAGAAAGCCAAGGTGA
*
74918 CCAAGCCCAAGCGGGCGAA-AAAGGCCAAGG
1 CCAAGCCCAAGCCGGCGAAGAAA-GCCAAGG
74948 AGGTTGCCAC
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
32 2 0.07
33 25 0.93
ACGTcount: A:0.35, C:0.30, G:0.33, T:0.02
Consensus pattern (33 bp):
CCAAGCCCAAGCCGGCGAAGAAAGCCAAGGTGA
Left flanking sequence: Indices 74385 -- 74884
TACGAGCGTAGATAAAAGGGTGTCTGCCCGACAGTTCACCATGGCTAAATCTAAACACACCGAGC
GCGTACTTGCTCTTCTTGACCAGATCGACAGCCCCGATCTCAGCGAAATCGACACCGATGCTCCT
GCCGAATGGCAAAAGAAGCTTGGGAAAAAGGAGGACATCGGCGACTTTGAGGAGCCCCTGTTGCA
ACCCAAGCTGTTGGTGGGGGTGTCGCTTGTGTTCACCGGCGACTACGAGCGGATTTCCCGCGAAG
AGGCGGTGGCTTTAGTAAAGAAGTTTGGGGCCAAGGCTCCGCTGCAGATCTCCGGTAGCACCAGT
GTGGTGGTGGTGGGGGACAGTCCCGGCCCGTCGAAGATCAAGAAGGTGTTGGAAAAGGGAATTAA
AGCGTTGGACGAGGACGGGTTCTTTCAGTTTTTGGCGCTTGTAGAGGGGTTGCCCGAGCCGGACG
AAGAAGAAGAGGAGGAAAAGCCCAAGAAGAAGAAGGCCACCAAGG
Right flanking sequence: Indices 74948 -- 75447
AGGTTGCCACCTAGATAAACGAATAGTCAATGAATAAGGGGGTGGGCGAGAAGAGTAGCATTGTG
TGATGGAAGAAAGTATCGCCCATAGCCGAGTTAGGTCCGGGAGAAGAACGTTCAATTGCGGGAGA
AGTAACACCGGTGGTGGAAGACATTTGGACAGAGGTAAGCGGTACGGCTGGTTAGTTCTTTGTTC
GTTCTTTATTCCTATCGGTTTTGTAATCTTAACTTTTGTAATTGACGATAATACACAATAAGAGC
TGGATTATAATATAAAATAAGTTCTTCTTTTACGTAGCTGGTAAGTGGTTTTTTATATTGGGAAA
TTCGTTAATAGGGGTTGTTCGTCTCAGAGACCTACCAAGAGTTGAAACAAATAACGAAGTTCGAG
CCAAGAGTAGATGACCTTTTGGCTAATTGAATCCCTGAAGGGGTATAATTACATCATTTTGATTC
AATGGTGAAATACGTGGTTGTGGTGTTAATAGCAAATGGTCGCTA
Found at i:75725 original size:13 final size:12
Alignment explanation
Indices: 75693--75726 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
75683 TAATATTCCA
*
75693 AAAAGTGACACC
1 AAAATTGACACC
75705 AAAATTGACACC
1 AAAATTGACACC
75717 AAAACTTGAC
1 AAAA-TTGAC
75727 CCCTTCATCC
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
12 15 0.75
13 5 0.25
ACGTcount: A:0.50, C:0.24, G:0.12, T:0.15
Consensus pattern (12 bp):
AAAATTGACACC
Left flanking sequence: Indices 75193 -- 75692
ATACACAATAAGAGCTGGATTATAATATAAAATAAGTTCTTCTTTTACGTAGCTGGTAAGTGGTT
TTTTATATTGGGAAATTCGTTAATAGGGGTTGTTCGTCTCAGAGACCTACCAAGAGTTGAAACAA
ATAACGAAGTTCGAGCCAAGAGTAGATGACCTTTTGGCTAATTGAATCCCTGAAGGGGTATAATT
ACATCATTTTGATTCAATGGTGAAATACGTGGTTGTGGTGTTAATAGCAAATGGTCGCTATGTAA
TAGTGTTTGCGTCTATACATTCCGTGGACTACAGTCTCAATTAAGTCAATTGAGTGGTTGATGGG
GTATTGGTGAATGCCATATTAAACTTTCAAGGAAAGTTACCACTTTATCGGGTTTACAGTTTGTT
CACCAAAACGAATTTTATCATGGCTTTTCACCCGCTGCTGGTATGGTACCAAAGTAATTAATAAT
AATCAACAATTATGCAGAGAACAATTCTAGCGGCATAATATTCCA
Right flanking sequence: Indices 75727 -- 76226
CCCTTCATCCAACCACTCAAACCATTCTAAAAACCATGCAAGCCTGCGTTCCATCCAACCTCCCA
ATCCATTCTAAAATGCCAGCCTATCCCATTGCTTCGTCCATTACCTATGCTATGCTACTCCAGCT
CCTTGTACTGGATGAACCGGCCCAAGTTCTGCCACGTCTCCTCCGCCTTCGCCTTCAACTGGTGG
TGCTTGTTTTTGTCCACCTTCTTGAACATCACCTTGACCCGCGGCTCGAACTCGCGAAGCCGGGC
CAAGTACCCCTGCTCGACAAACACCGGGGCGTCCCAAGGGTAGCTCTTGTCGCCAAACACGTCGT
ACACGAGGTTGAGGGCCTCGATGGCCACCTCGGTGTGCATGGGGTCGACGACATCGACGGTGGCG
TCCACGGTGGCCATCAAAAACCCGCCGACCTCGCTGACGACCAGGGTATCCAGCACCAACGGGGC
CACCGCCCCCAAAAAGCCCATGATGGCGAGGTACAACTCCAACAG
Found at i:76438 original size:21 final size:21
Alignment explanation
Indices: 76414--76454 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
76404 AGCACCGGCT
*
76414 GCACCGGCACCAGAGGCACCA
1 GCACCAGCACCAGAGGCACCA
76435 GCACCAGCACCAGAGGCACC
1 GCACCAGCACCAGAGGCACC
76455 GGAACTCGCA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.29, C:0.44, G:0.27, T:0.00
Consensus pattern (21 bp):
GCACCAGCACCAGAGGCACCA
Left flanking sequence: Indices 75914 -- 76413
ACTGGTGGTGCTTGTTTTTGTCCACCTTCTTGAACATCACCTTGACCCGCGGCTCGAACTCGCGA
AGCCGGGCCAAGTACCCCTGCTCGACAAACACCGGGGCGTCCCAAGGGTAGCTCTTGTCGCCAAA
CACGTCGTACACGAGGTTGAGGGCCTCGATGGCCACCTCGGTGTGCATGGGGTCGACGACATCGA
CGGTGGCGTCCACGGTGGCCATCAAAAACCCGCCGACCTCGCTGACGACCAGGGTATCCAGCACC
AACGGGGCCACCGCCCCCAAAAAGCCCATGATGGCGAGGTACAACTCCAACAGCTCGTCGTCGCT
CTTGGAGAGGCCCTTGACCTGGGCCACGAGCTGCTGGATCATCAGCATCTGCACCTTTTGCTGGA
CGGTGGGCCCGATCGCCTTGGCAATGCCCCAGAGGATCAGGAGCACCGTCTTCTGGAGCTCGACC
GAGGCGGTGGGGAGGGCGGCGAGGGAGGCAGCACCAGCACCGGCT
Right flanking sequence: Indices 76455 -- 76954
GGAACTCGCACTGGCCACCACCTGCTGCATGAGGTCCCACACCCCCGTGCTCAACTCAAACCACG
CGGTGGGCACCTTGTCGTTGGCCAACATCAACCAGCAGAAGTTGTTGAGCGCCACCAACGCGCGG
TTCAACACGAGCAAGCGCCCCTGGTGGGCGATCTCAAACTTGACCACCTCCACGAGGAACGGGAG
CACCTTGCCCAACAACACGTGGGCCACGATGTCGTCGGAAAGCACCACGGGGCGCTGGAAGTGCG
AGATGGAGAGCACCTCCAACACCGCGGTCACGAGGTCGAGCAGCACCTCCAACGCGCGCAAGTCG
GCGCGCGCCGCGGCGGCGGCCTGGGTGGCGCGCTTGGCGGCGGCGGCGCCTCCGTCGGAGGAGGT
GTCAGCAGCGGCACCGGCGTCAGCACCAGCACCAGCACCAGCACCAGCACCAGAACCAGAACCAG
CACCAGAACCAGAGCCACTACCAGCACCACTACCAGCACCACCAC
Found at i:76454 original size:15 final size:15
Alignment explanation
Indices: 76399--76441 Score: 50
Period size: 15 Copynumber: 2.9 Consensus size: 15
76389 GAGGGAGGCA
* **
76399 GCACCAGCACCGGCT
1 GCACCAGCACCAGAG
*
76414 GCACCGGCACCAGAG
1 GCACCAGCACCAGAG
76429 GCACCAGCACCAG
1 GCACCAGCACCAG
76442 CACCAGAGGC
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.26, C:0.44, G:0.28, T:0.02
Consensus pattern (15 bp):
GCACCAGCACCAGAG
Left flanking sequence: Indices 75899 -- 76398
CCGCCTTCGCCTTCAACTGGTGGTGCTTGTTTTTGTCCACCTTCTTGAACATCACCTTGACCCGC
GGCTCGAACTCGCGAAGCCGGGCCAAGTACCCCTGCTCGACAAACACCGGGGCGTCCCAAGGGTA
GCTCTTGTCGCCAAACACGTCGTACACGAGGTTGAGGGCCTCGATGGCCACCTCGGTGTGCATGG
GGTCGACGACATCGACGGTGGCGTCCACGGTGGCCATCAAAAACCCGCCGACCTCGCTGACGACC
AGGGTATCCAGCACCAACGGGGCCACCGCCCCCAAAAAGCCCATGATGGCGAGGTACAACTCCAA
CAGCTCGTCGTCGCTCTTGGAGAGGCCCTTGACCTGGGCCACGAGCTGCTGGATCATCAGCATCT
GCACCTTTTGCTGGACGGTGGGCCCGATCGCCTTGGCAATGCCCCAGAGGATCAGGAGCACCGTC
TTCTGGAGCTCGACCGAGGCGGTGGGGAGGGCGGCGAGGGAGGCA
Right flanking sequence: Indices 76442 -- 76941
CACCAGAGGCACCGGAACTCGCACTGGCCACCACCTGCTGCATGAGGTCCCACACCCCCGTGCTC
AACTCAAACCACGCGGTGGGCACCTTGTCGTTGGCCAACATCAACCAGCAGAAGTTGTTGAGCGC
CACCAACGCGCGGTTCAACACGAGCAAGCGCCCCTGGTGGGCGATCTCAAACTTGACCACCTCCA
CGAGGAACGGGAGCACCTTGCCCAACAACACGTGGGCCACGATGTCGTCGGAAAGCACCACGGGG
CGCTGGAAGTGCGAGATGGAGAGCACCTCCAACACCGCGGTCACGAGGTCGAGCAGCACCTCCAA
CGCGCGCAAGTCGGCGCGCGCCGCGGCGGCGGCCTGGGTGGCGCGCTTGGCGGCGGCGGCGCCTC
CGTCGGAGGAGGTGTCAGCAGCGGCACCGGCGTCAGCACCAGCACCAGCACCAGCACCAGCACCA
GAACCAGAACCAGCACCAGAACCAGAGCCACTACCAGCACCACTA
Found at i:76465 original size:21 final size:21
Alignment explanation
Indices: 76420--76459 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
76410 GGCTGCACCG
*
76420 GCACCAGAGGCACCAGCACCA
1 GCACCAGAGGCACCAGAACCA
*
76441 GCACCAGAGGCACCGGAAC
1 GCACCAGAGGCACCAGAAC
76460 TCGCACTGGC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.33, C:0.40, G:0.28, T:0.00
Consensus pattern (21 bp):
GCACCAGAGGCACCAGAACCA
Left flanking sequence: Indices 75920 -- 76419
GGTGCTTGTTTTTGTCCACCTTCTTGAACATCACCTTGACCCGCGGCTCGAACTCGCGAAGCCGG
GCCAAGTACCCCTGCTCGACAAACACCGGGGCGTCCCAAGGGTAGCTCTTGTCGCCAAACACGTC
GTACACGAGGTTGAGGGCCTCGATGGCCACCTCGGTGTGCATGGGGTCGACGACATCGACGGTGG
CGTCCACGGTGGCCATCAAAAACCCGCCGACCTCGCTGACGACCAGGGTATCCAGCACCAACGGG
GCCACCGCCCCCAAAAAGCCCATGATGGCGAGGTACAACTCCAACAGCTCGTCGTCGCTCTTGGA
GAGGCCCTTGACCTGGGCCACGAGCTGCTGGATCATCAGCATCTGCACCTTTTGCTGGACGGTGG
GCCCGATCGCCTTGGCAATGCCCCAGAGGATCAGGAGCACCGTCTTCTGGAGCTCGACCGAGGCG
GTGGGGAGGGCGGCGAGGGAGGCAGCACCAGCACCGGCTGCACCG
Right flanking sequence: Indices 76460 -- 76959
TCGCACTGGCCACCACCTGCTGCATGAGGTCCCACACCCCCGTGCTCAACTCAAACCACGCGGTG
GGCACCTTGTCGTTGGCCAACATCAACCAGCAGAAGTTGTTGAGCGCCACCAACGCGCGGTTCAA
CACGAGCAAGCGCCCCTGGTGGGCGATCTCAAACTTGACCACCTCCACGAGGAACGGGAGCACCT
TGCCCAACAACACGTGGGCCACGATGTCGTCGGAAAGCACCACGGGGCGCTGGAAGTGCGAGATG
GAGAGCACCTCCAACACCGCGGTCACGAGGTCGAGCAGCACCTCCAACGCGCGCAAGTCGGCGCG
CGCCGCGGCGGCGGCCTGGGTGGCGCGCTTGGCGGCGGCGGCGCCTCCGTCGGAGGAGGTGTCAG
CAGCGGCACCGGCGTCAGCACCAGCACCAGCACCAGCACCAGCACCAGAACCAGAACCAGCACCA
GAACCAGAGCCACTACCAGCACCACTACCAGCACCACCACCATTA
Found at i:76874 original size:6 final size:6
Alignment explanation
Indices: 76865--76956 Score: 100
Period size: 6 Copynumber: 15.3 Consensus size: 6
76855 GCACCGGCGT
* *
76865 CAGCAC CAGCAC CAGCAC CAGCAC CAGCAC CAGAAC CAGAAC CAGCAC
1 CAGCAC CAGCAC CAGCAC CAGCAC CAGCAC CAGCAC CAGCAC CAGCAC
* *
76913 CAGAAC CAG-AGC CA-CTAC CAGCAC CA-CTAC CAGCAC CACCAC CA
1 CAGCAC CAGCA-C CAGC-AC CAGCAC CAGC-AC CAGCAC CAGCAC CA
76957 TTACCACCAC
Statistics
Matches: 76, Mismatches: 4, Indels: 12
0.83 0.04 0.13
Matches are distributed among these distances:
5 2 0.03
6 71 0.93
7 3 0.04
ACGTcount: A:0.37, C:0.47, G:0.14, T:0.02
Consensus pattern (6 bp):
CAGCAC
Left flanking sequence: Indices 76365 -- 76864
GACCGAGGCGGTGGGGAGGGCGGCGAGGGAGGCAGCACCAGCACCGGCTGCACCGGCACCAGAGG
CACCAGCACCAGCACCAGAGGCACCGGAACTCGCACTGGCCACCACCTGCTGCATGAGGTCCCAC
ACCCCCGTGCTCAACTCAAACCACGCGGTGGGCACCTTGTCGTTGGCCAACATCAACCAGCAGAA
GTTGTTGAGCGCCACCAACGCGCGGTTCAACACGAGCAAGCGCCCCTGGTGGGCGATCTCAAACT
TGACCACCTCCACGAGGAACGGGAGCACCTTGCCCAACAACACGTGGGCCACGATGTCGTCGGAA
AGCACCACGGGGCGCTGGAAGTGCGAGATGGAGAGCACCTCCAACACCGCGGTCACGAGGTCGAG
CAGCACCTCCAACGCGCGCAAGTCGGCGCGCGCCGCGGCGGCGGCCTGGGTGGCGCGCTTGGCGG
CGGCGGCGCCTCCGTCGGAGGAGGTGTCAGCAGCGGCACCGGCGT
Right flanking sequence: Indices 76957 -- 77456
TTACCACCACCACCACTCTGAAGCGGGGCGGTGTCGTTCAACGTCCGCACCACCTCGGCAAGGTC
GATGGTCAGACACGTGGTGTACAACGAGAGCAACACCTCGCCACACGCGGTGTGGTCCGCGTTCT
CCATGGTGTTGAAGCGGATGCCGTCGAGGTAGACGGCGGTCAAGCGGTCGCCGCGCTGGTCGAGC
GTATCAAAGTTGAGGGAGCCCTCGCCCGCCTGGAGCCTCAAGAGCTCGACGAACTGGTCCAGCTC
GGTGGAGAACTCGTAGAGGAAGTCGAGTGCCGCGTGCACCAACCGCTCCAGCACCGGTGCCGCCA
ACACCTCGAGCACAAACCGCACGAGCGGGTCGATCTTGGCAAACACCAGCTCGAAGATGACCTCG
TCGGAGGTGGCCATCACCACCACAAGCAGCAACACGTTCTCGCAGAAGTCGTACGCCAACTCGCG
CTCGGGCCCCAGGGGGCGCTCCCACTCGGGGCCGAACCCCGCCGC
Found at i:76876 original size:18 final size:18
Alignment explanation
Indices: 76845--76897 Score: 61
Period size: 18 Copynumber: 2.9 Consensus size: 18
76835 CGGAGGAGGT
* * *
76845 GTCAGCAGCGGCACCGGC
1 GTCAGCACCAGCACCAGC
76863 GTCAGCACCAGCACCAGC
1 GTCAGCACCAGCACCAGC
**
76881 ACCAGCACCAGCACCAG
1 GTCAGCACCAGCACCAG
76898 AACCAGAACC
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 30 1.00
ACGTcount: A:0.26, C:0.43, G:0.26, T:0.04
Consensus pattern (18 bp):
GTCAGCACCAGCACCAGC
Left flanking sequence: Indices 76345 -- 76844
AGCACCGTCTTCTGGAGCTCGACCGAGGCGGTGGGGAGGGCGGCGAGGGAGGCAGCACCAGCACC
GGCTGCACCGGCACCAGAGGCACCAGCACCAGCACCAGAGGCACCGGAACTCGCACTGGCCACCA
CCTGCTGCATGAGGTCCCACACCCCCGTGCTCAACTCAAACCACGCGGTGGGCACCTTGTCGTTG
GCCAACATCAACCAGCAGAAGTTGTTGAGCGCCACCAACGCGCGGTTCAACACGAGCAAGCGCCC
CTGGTGGGCGATCTCAAACTTGACCACCTCCACGAGGAACGGGAGCACCTTGCCCAACAACACGT
GGGCCACGATGTCGTCGGAAAGCACCACGGGGCGCTGGAAGTGCGAGATGGAGAGCACCTCCAAC
ACCGCGGTCACGAGGTCGAGCAGCACCTCCAACGCGCGCAAGTCGGCGCGCGCCGCGGCGGCGGC
CTGGGTGGCGCGCTTGGCGGCGGCGGCGCCTCCGTCGGAGGAGGT
Right flanking sequence: Indices 76898 -- 77397
AACCAGAACCAGCACCAGAACCAGAGCCACTACCAGCACCACTACCAGCACCACCACCATTACCA
CCACCACCACTCTGAAGCGGGGCGGTGTCGTTCAACGTCCGCACCACCTCGGCAAGGTCGATGGT
CAGACACGTGGTGTACAACGAGAGCAACACCTCGCCACACGCGGTGTGGTCCGCGTTCTCCATGG
TGTTGAAGCGGATGCCGTCGAGGTAGACGGCGGTCAAGCGGTCGCCGCGCTGGTCGAGCGTATCA
AAGTTGAGGGAGCCCTCGCCCGCCTGGAGCCTCAAGAGCTCGACGAACTGGTCCAGCTCGGTGGA
GAACTCGTAGAGGAAGTCGAGTGCCGCGTGCACCAACCGCTCCAGCACCGGTGCCGCCAACACCT
CGAGCACAAACCGCACGAGCGGGTCGATCTTGGCAAACACCAGCTCGAAGATGACCTCGTCGGAG
GTGGCCATCACCACCACAAGCAGCAACACGTTCTCGCAGAAGTCG
Found at i:78238 original size:25 final size:25
Alignment explanation
Indices: 78191--78243 Score: 72
Period size: 25 Copynumber: 2.1 Consensus size: 25
78181 CGTAACAATG
78191 AGACAATCAGGGCACACAACAGA-A
1 AGACAATCAGGGCACACAACAGAGA
* *
78215 AGACAATACAGGGCACATATCAGAGA
1 AGACAAT-CAGGGCACACAACAGAGA
78241 AGA
1 AGA
78244 TGACGCAGGG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
24 7 0.28
25 14 0.56
26 4 0.16
ACGTcount: A:0.49, C:0.21, G:0.23, T:0.08
Consensus pattern (25 bp):
AGACAATCAGGGCACACAACAGAGA
Left flanking sequence: Indices 77691 -- 78190
CATGGCCTTTTCTTTGGGGTCCGCCAGCTTGAGGCGGGCGATGAGGGGGGCCACCTCCGACGAGG
AGGACGCGGCGGAGGTGGCGGCGGCGATCCCGGCGCCGACGGCGGCGCGGTGCCCCGTGAGCGGG
TTGACTCGGGCCCGGGTGTTCTTTCTGGTTTTCTTTGTCTTCCCCATAGTCGAGGAGGGTGTGGG
GGGAGGGTGTAGGGGAGTAGAGGGAGAGTGGGTGGGTGCGGTGCTTGATCGCGCGATGAGGTGCG
GTGCAGGTGGGGGCGGCGAGGGGGGCCGGGGATGGGGAAAGAGCGCGGGGCTACGGGTGAAAAAT
GGGTGGCGGGGGAGCCGTGTGGCGGGTGGGGCTACGGTGGGCGGGTGTTTTGGGTGGGAATAGGA
GTGGTTGGTGCGGTAGCGGGGGGTTTGGCGGCCCTCTCGTAGTGTAGTCAAGTGAACTGGTGAGT
GGCCAGGGCACAGAACATTATGGCAAAGCAGGGCACGTAACAATG
Right flanking sequence: Indices 78244 -- 78743
TGACGCAGGGCACATAACAGTAAGGGAGCAGGTATTAGTAATGGTGGTGAAGAAATCGGGTGATT
GAATGGTGTGAATGGTGTGAATGTCATTGCGCGCAATTGCGACATGACCGCCTTCTCGTGGTCCG
GTAGCCTCCTTGGAGCAAGCGTACGATGCAATGGTTGTTGGTTGTTGCAGTAGGCGTACCTTGGG
TGACTCCAGGTCAGGCTAGGCACTCAACCGCCTGGCTTGGCCCACGCTGGCTCAACGCCCACAAT
CTCAATTAACCTAAACACTCGCGATACACCTGGCCATCAGACCTGGCCATCAGGCGTCCCTCTAA
TGGGGACCATCTGCAATCACCATCACCGCCTGCACACAACCACCCTGGCAACTTCCCGGTTAGAC
TCTGGTACCCCCTCGCTCACAACCCACTGCAATGCTCACAACAACATTCCCAGGGCCCAGTGACT
GTTGCTCCTACAGGCAACCAAAACTGGTATCCCCGTATCTGGCTT
Found at i:78549 original size:13 final size:13
Alignment explanation
Indices: 78531--78556 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
78521 CTCGCGATAC
78531 ACCTGGCCATCAG
1 ACCTGGCCATCAG
78544 ACCTGGCCATCAG
1 ACCTGGCCATCAG
78557 GCGTCCCTCT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.38, G:0.23, T:0.15
Consensus pattern (13 bp):
ACCTGGCCATCAG
Left flanking sequence: Indices 78031 -- 78530
CGTGTGGCGGGTGGGGCTACGGTGGGCGGGTGTTTTGGGTGGGAATAGGAGTGGTTGGTGCGGTA
GCGGGGGGTTTGGCGGCCCTCTCGTAGTGTAGTCAAGTGAACTGGTGAGTGGCCAGGGCACAGAA
CATTATGGCAAAGCAGGGCACGTAACAATGAGACAATCAGGGCACACAACAGAAAGACAATACAG
GGCACATATCAGAGAAGATGACGCAGGGCACATAACAGTAAGGGAGCAGGTATTAGTAATGGTGG
TGAAGAAATCGGGTGATTGAATGGTGTGAATGGTGTGAATGTCATTGCGCGCAATTGCGACATGA
CCGCCTTCTCGTGGTCCGGTAGCCTCCTTGGAGCAAGCGTACGATGCAATGGTTGTTGGTTGTTG
CAGTAGGCGTACCTTGGGTGACTCCAGGTCAGGCTAGGCACTCAACCGCCTGGCTTGGCCCACGC
TGGCTCAACGCCCACAATCTCAATTAACCTAAACACTCGCGATAC
Right flanking sequence: Indices 78557 -- 79056
GCGTCCCTCTAATGGGGACCATCTGCAATCACCATCACCGCCTGCACACAACCACCCTGGCAACT
TCCCGGTTAGACTCTGGTACCCCCTCGCTCACAACCCACTGCAATGCTCACAACAACATTCCCAG
GGCCCAGTGACTGTTGCTCCTACAGGCAACCAAAACTGGTATCCCCGTATCTGGCTTGTGCCCTG
TGCAAACAATAGCCTAAAAGTACCGTGCTTCCGCCGTAGTCTCGTAACCCCTGTCAAGGTCACAA
CCCCTTTCAGCCCTCAGGGCCGCAACCACGCCAAGACATCACCTGAATATATTTAGGTTTGCCTC
TCTCGTGCCACCGCGCCTCGTACAACCCATCTCGCCGCGGTACCGGTGGTCTCCCCACCAAATGC
CGCGGGGTTGGCTACGATAACACCGGCGTATTCCCGCGCGAAGTTTGCTTTGTGCCTGAGCGAAA
TGCGGGGCTATCGGCCGAGATTGCGGTCCGCCCGAGTTAGCTGCC
Found at i:80565 original size:12 final size:12
Alignment explanation
Indices: 80544--80579 Score: 54
Period size: 12 Copynumber: 3.0 Consensus size: 12
80534 TGACGCCATT
*
80544 GAGTCGGCTGCC
1 GAGTCCGCTGCC
*
80556 GAGTCCGCTGCT
1 GAGTCCGCTGCC
80568 GAGTCCGCTGCC
1 GAGTCCGCTGCC
80580 TCGTCTGTTG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.08, C:0.36, G:0.36, T:0.19
Consensus pattern (12 bp):
GAGTCCGCTGCC
Left flanking sequence: Indices 80044 -- 80543
TTTCACTGGTGGTTAGTAGACAGCTCTCGAGCCCGAAAAATCCTACTTACATCACGATGGGCTTC
CAGAACTTGATGCCCAGGTACCACGCAAGCACGCCCACGGCGACCACCGTCAACGCTTTCGCTCC
TGCCTGGCTCATTTGTCGTGAAAGAGCTGGCCCCACGAAAAACCCCTTTTCTCCACCCCGGGCCG
CGTAACCCACAACAACCGGGCTCCCAACAGAAACACACCCGCGCTCACAACAGCACCCGGGCTCG
TGGCGAGCAACCGTGCCTTCAGCCCGAAATGGTTGCAAAAATAGAAATGCAAGCAACAGGCGGCC
ACGCCCGGCTCACTATAAAGAGGGGAGCCATGCCGTAGTTTCTCTAACTAATTTTATCCCTTTCG
CTATGCACAGATCTGCCCTTTTGACTATTGCCTTGGCCACCGCCGCCATTGCCACCACCACCGTG
ACCGAGCCCGCTCCCACTGAGGACCAGAACGCTTCTGACGCCATT
Right flanking sequence: Indices 80580 -- 81079
TCGTCTGTTGCCGAGACTGCCACCGACGAGCAGCCCGCTGAGTCTTCTCCCGAGGAGACCCAGGC
CCAGCCTTCTCCTTCCGCCACCGAGGGCGGCTCTGGCGACAAGACCGTCACTGACATTGTCTTCT
ACTGCCCCGAGACCACCACTGTCACTATCACCACTTGCCAGAACGACCAGTGCCAGCCCCACACC
ACTGAGTGCCCCCCTGGTACCGTGACCATCACCGGTACTTGCGTTGTGCCCGAGGACTGGCACCC
CGAGACCCCTGGTGCTCCCACCGTGACCGTGTTGCCTCCTGGCCACGGTGGTGACGGTGACGACC
ACAACGACGGCGACGACAACGACAACGACGGCGCTGAGGGTGACCACAACAACGACAACAACGAC
GGTGACGACAACGACAACGACGGTGCCGAGGGTGACCACAACAACGACAACAACGACGGTGACGA
CAACGACAACGACGGTGCCGAGGGTGACCACAACAACGACAACAA
Found at i:80973 original size:27 final size:27
Alignment explanation
Indices: 80943--81095 Score: 117
Period size: 27 Copynumber: 5.4 Consensus size: 27
80933 CGGCGCTGAG
80943 GGTGACCACAACAACGACAACAACGAC
1 GGTGACCACAACAACGACAACAACGAC
* ***** *
80970 GGTGACGACAACGACAACGACGGTGCCGAG
1 GGTGAC--C-ACAACAACGACAACAACGAC
81000 GGTGACCACAACAACGACAACAACGAC
1 GGTGACCACAACAACGACAACAACGAC
* ***** *
81027 GGTGACGACAACGACAACGACGGTGCCGAG
1 GGTGAC--C-ACAACAACGACAACAACGAC
81057 GGTGACCACAACAACGACAACAACGAC
1 GGTGACCACAACAACGACAACAACGAC
*
81084 GGTGACGACAAC
1 GGTGACCACAAC
81096 GACAACGACG
Statistics
Matches: 91, Mismatches: 29, Indels: 12
0.69 0.22 0.09
Matches are distributed among these distances:
27 49 0.54
28 2 0.02
29 2 0.02
30 38 0.42
ACGTcount: A:0.38, C:0.30, G:0.27, T:0.05
Consensus pattern (27 bp):
GGTGACCACAACAACGACAACAACGAC
Left flanking sequence: Indices 80443 -- 80942
GATCTGCCCTTTTGACTATTGCCTTGGCCACCGCCGCCATTGCCACCACCACCGTGACCGAGCCC
GCTCCCACTGAGGACCAGAACGCTTCTGACGCCATTGAGTCGGCTGCCGAGTCCGCTGCTGAGTC
CGCTGCCTCGTCTGTTGCCGAGACTGCCACCGACGAGCAGCCCGCTGAGTCTTCTCCCGAGGAGA
CCCAGGCCCAGCCTTCTCCTTCCGCCACCGAGGGCGGCTCTGGCGACAAGACCGTCACTGACATT
GTCTTCTACTGCCCCGAGACCACCACTGTCACTATCACCACTTGCCAGAACGACCAGTGCCAGCC
CCACACCACTGAGTGCCCCCCTGGTACCGTGACCATCACCGGTACTTGCGTTGTGCCCGAGGACT
GGCACCCCGAGACCCCTGGTGCTCCCACCGTGACCGTGTTGCCTCCTGGCCACGGTGGTGACGGT
GACGACCACAACGACGGCGACGACAACGACAACGACGGCGCTGAG
Right flanking sequence: Indices 81096 -- 81595
GACAACGACGGTGACGACAACGACAACGACGGTGACGACAACCAGCAGCCTGGTGTCCCCCCTCA
GATTGAGGAGAACGCCGCCGTCAAGGGTGCCGTCGCTGGTGCCGCTGCCCTTGCTGGTTTCGTTG
GCTTGATGTTGTAAATTTAGCTACTATGTTTAACCCCTAGAGGGCCTAATAAAATGTTTAAAATC
AAAATGAAATAAATGTAGTATGGTTGTAAATTATTCCTACTTGGTGGTTTTCTCGAATCCCCATT
TTCACTCTAGTCGGGGGAATAGGGACGGCTCCTATTTTATGCAGCAATAGTCAACCTTGGAGGCT
ACCTTCCTATTCGGGACATGTCAAGCAGGGATAGCTAATAATTCATAGTTAATCACTGGCACCGC
AAATAGCCCAGAAAAAATGCCGAACCCTACAAAAGAAAATCAAAGACCAGGTTAAAAATATGCGC
GGGGTTGTAGGGTGCCGTGCTTCGCGAGGGGTGACGCGCCTGGCA
Found at i:80988 original size:21 final size:21
Alignment explanation
Indices: 80962--81137 Score: 124
Period size: 21 Copynumber: 9.0 Consensus size: 21
80952 AACAACGACA
80962 ACAACGACGGTGACGACAACG
1 ACAACGACGGTGACGACAACG
* ****
80983 ACAACGACGGTGCCGAGGGTG
1 ACAACGACGGTGACGACAACG
* * *
81004 ACCACAAC---AACGACAA--
1 ACAACGACGGTGACGACAACG
81020 -CAACGACGGTGACGACAACG
1 ACAACGACGGTGACGACAACG
* ****
81040 ACAACGACGGTGCCGAGGGTG
1 ACAACGACGGTGACGACAACG
* * *
81061 ACCACAAC---AACGACAA--
1 ACAACGACGGTGACGACAACG
81077 -CAACGACGGTGACGACAACG
1 ACAACGACGGTGACGACAACG
81097 ACAACGACGGTGACGACAACG
1 ACAACGACGGTGACGACAACG
81118 ACAACGACGGTGACGACAAC
1 ACAACGACGGTGACGACAAC
81138 CAGCAGCCTG
Statistics
Matches: 113, Mismatches: 30, Indels: 24
0.68 0.18 0.14
Matches are distributed among these distances:
15 10 0.09
18 20 0.18
21 83 0.73
ACGTcount: A:0.38, C:0.30, G:0.28, T:0.05
Consensus pattern (21 bp):
ACAACGACGGTGACGACAACG
Left flanking sequence: Indices 80462 -- 80961
TGCCTTGGCCACCGCCGCCATTGCCACCACCACCGTGACCGAGCCCGCTCCCACTGAGGACCAGA
ACGCTTCTGACGCCATTGAGTCGGCTGCCGAGTCCGCTGCTGAGTCCGCTGCCTCGTCTGTTGCC
GAGACTGCCACCGACGAGCAGCCCGCTGAGTCTTCTCCCGAGGAGACCCAGGCCCAGCCTTCTCC
TTCCGCCACCGAGGGCGGCTCTGGCGACAAGACCGTCACTGACATTGTCTTCTACTGCCCCGAGA
CCACCACTGTCACTATCACCACTTGCCAGAACGACCAGTGCCAGCCCCACACCACTGAGTGCCCC
CCTGGTACCGTGACCATCACCGGTACTTGCGTTGTGCCCGAGGACTGGCACCCCGAGACCCCTGG
TGCTCCCACCGTGACCGTGTTGCCTCCTGGCCACGGTGGTGACGGTGACGACCACAACGACGGCG
ACGACAACGACAACGACGGCGCTGAGGGTGACCACAACAACGACA
Right flanking sequence: Indices 81138 -- 81637
CAGCAGCCTGGTGTCCCCCCTCAGATTGAGGAGAACGCCGCCGTCAAGGGTGCCGTCGCTGGTGC
CGCTGCCCTTGCTGGTTTCGTTGGCTTGATGTTGTAAATTTAGCTACTATGTTTAACCCCTAGAG
GGCCTAATAAAATGTTTAAAATCAAAATGAAATAAATGTAGTATGGTTGTAAATTATTCCTACTT
GGTGGTTTTCTCGAATCCCCATTTTCACTCTAGTCGGGGGAATAGGGACGGCTCCTATTTTATGC
AGCAATAGTCAACCTTGGAGGCTACCTTCCTATTCGGGACATGTCAAGCAGGGATAGCTAATAAT
TCATAGTTAATCACTGGCACCGCAAATAGCCCAGAAAAAATGCCGAACCCTACAAAAGAAAATCA
AAGACCAGGTTAAAAATATGCGCGGGGTTGTAGGGTGCCGTGCTTCGCGAGGGGTGACGCGCCTG
GCATGTTTGGATACGCAGTCAGAGTTTAAATGGCCCAGGCCGCGA
Found at i:81137 original size:57 final size:57
Alignment explanation
Indices: 80899--81108 Score: 384
Period size: 57 Copynumber: 3.7 Consensus size: 57
80889 GGTGACGGTG
* * * *
80899 ACGACCACAACGACGGCGACGACAACGACAACGACGGCGCTGAGGGTGACCACAACA
1 ACGACAACAACGACGGTGACGACAACGACAACGACGGTGCCGAGGGTGACCACAACA
80956 ACGACAACAACGACGGTGACGACAACGACAACGACGGTGCCGAGGGTGACCACAACA
1 ACGACAACAACGACGGTGACGACAACGACAACGACGGTGCCGAGGGTGACCACAACA
81013 ACGACAACAACGACGGTGACGACAACGACAACGACGGTGCCGAGGGTGACCACAACA
1 ACGACAACAACGACGGTGACGACAACGACAACGACGGTGCCGAGGGTGACCACAACA
81070 ACGACAACAACGACGGTGACGACAACGACAACGACGGTG
1 ACGACAACAACGACGGTGACGACAACGACAACGACGGTG
81109 ACGACAACGA
Statistics
Matches: 149, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
57 149 1.00
ACGTcount: A:0.37, C:0.30, G:0.28, T:0.05
Consensus pattern (57 bp):
ACGACAACAACGACGGTGACGACAACGACAACGACGGTGCCGAGGGTGACCACAACA
Left flanking sequence: Indices 80399 -- 80898
TGCCGTAGTTTCTCTAACTAATTTTATCCCTTTCGCTATGCACAGATCTGCCCTTTTGACTATTG
CCTTGGCCACCGCCGCCATTGCCACCACCACCGTGACCGAGCCCGCTCCCACTGAGGACCAGAAC
GCTTCTGACGCCATTGAGTCGGCTGCCGAGTCCGCTGCTGAGTCCGCTGCCTCGTCTGTTGCCGA
GACTGCCACCGACGAGCAGCCCGCTGAGTCTTCTCCCGAGGAGACCCAGGCCCAGCCTTCTCCTT
CCGCCACCGAGGGCGGCTCTGGCGACAAGACCGTCACTGACATTGTCTTCTACTGCCCCGAGACC
ACCACTGTCACTATCACCACTTGCCAGAACGACCAGTGCCAGCCCCACACCACTGAGTGCCCCCC
TGGTACCGTGACCATCACCGGTACTTGCGTTGTGCCCGAGGACTGGCACCCCGAGACCCCTGGTG
CTCCCACCGTGACCGTGTTGCCTCCTGGCCACGGTGGTGACGGTG
Right flanking sequence: Indices 81109 -- 81608
ACGACAACGACAACGACGGTGACGACAACCAGCAGCCTGGTGTCCCCCCTCAGATTGAGGAGAAC
GCCGCCGTCAAGGGTGCCGTCGCTGGTGCCGCTGCCCTTGCTGGTTTCGTTGGCTTGATGTTGTA
AATTTAGCTACTATGTTTAACCCCTAGAGGGCCTAATAAAATGTTTAAAATCAAAATGAAATAAA
TGTAGTATGGTTGTAAATTATTCCTACTTGGTGGTTTTCTCGAATCCCCATTTTCACTCTAGTCG
GGGGAATAGGGACGGCTCCTATTTTATGCAGCAATAGTCAACCTTGGAGGCTACCTTCCTATTCG
GGACATGTCAAGCAGGGATAGCTAATAATTCATAGTTAATCACTGGCACCGCAAATAGCCCAGAA
AAAATGCCGAACCCTACAAAAGAAAATCAAAGACCAGGTTAAAAATATGCGCGGGGTTGTAGGGT
GCCGTGCTTCGCGAGGGGTGACGCGCCTGGCATGTTTGGATACGC
Found at i:84491 original size:23 final size:23
Alignment explanation
Indices: 84464--84510 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 23
84454 CAGCAGCCCA
* * *
84464 CAACCACTGCCCATAACCACAGC
1 CAACCACAGCCCACAACAACAGC
84487 CAACCACAGCCCACAACAACAGC
1 CAACCACAGCCCACAACAACAGC
84510 C
1 C
84511 CACAACAACA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.38, C:0.49, G:0.09, T:0.04
Consensus pattern (23 bp):
CAACCACAGCCCACAACAACAGC
Left flanking sequence: Indices 83964 -- 84463
CCGCCGTTTGCGGGGACCGAGCCCCCAAGGTTGATGGGGGTAGTGCGTGCCCGAGGCGAGAACGG
GGTCTAGTAAGTAGTAAGCGATTATTGGTTTGTGTTGGTTTGTACGTATAGGTGTGAGACGAACT
TTTCAAGGTGGAAACCTTGGGCCACAATGGATAAATACGTACTAGAAATCTAAAGGGATCAAGAA
CTAGCCAGTATATTCGTAAGGTAGTTTACCGGTATATTCGTAAGGCAGTACTGACCCAAGCAAAC
CATGTCTTGACACACGTGACAACATACACGTGATCATAAACACGTGCAAACTTCAAACTCCTATA
CTAAAGCAAACCACGAAACCAGTGACTGAAAGTAACACGGGCACTCTGAACAGTAATCAATATCC
ATGTGTACCCACATCATTTTACGCATCTCATCTTCCCCTTTTTATTCCATAAACCCATAACCCAT
AAGTTCTCACCATACCCATCAATATCCCACTACCACAGCAGCCCA
Right flanking sequence: Indices 84511 -- 85010
CACAACAACAGCAACACACCACACCACACACCCACTTACCCTCCCTACCCACACTCTCCTTCCTC
TATTCCACCCTCCTACCTCTTCTACCCATTCCACCCACCTACCTTCTTCTCCCACCTTTGCAGCA
AAACACTGCGAACCTCACCACCAACCACCCCACCCCGACCCACTGCTGCCCACGCAAGATGGCGT
TAAAGCTCAAACTAAACGTCGGAGGGGCCAATTCCGGGGACAATGCACTGAACTCAGGCTCTCCA
CAGCCGCCCGCGGCGCTGCTGGCCCTGCCCGCGGCCCCGCTGCCCTCGCTCCCGAAGATCAAAAT
CAAGCGGCCGAAACCGCCGCCCTCAGACGCCCAGAAACCCACCAAGAAACTCAAGATCTCGTTGG
GCGGGGCGAAAAAGCTGCCGATTCCGAGCGCCACCCCTAAACAGCGGCTGGCGAAGCCCGCCACC
CCCGGATCTCAACTTCCGAGGGTACGGATCAAACCAACACGCGTG
Found at i:84517 original size:13 final size:13
Alignment explanation
Indices: 84457--84522 Score: 75
Period size: 13 Copynumber: 5.3 Consensus size: 13
84447 ACTACCACAG
84457 CAGCCCACAACCA
1 CAGCCCACAACCA
* *
84470 CTGCCCATAACCA
1 CAGCCCACAACCA
84483 CAG--C-CAACCA
1 CAGCCCACAACCA
*
84493 CAGCCCACAACAA
1 CAGCCCACAACCA
*
84506 CAGCCCACAACAA
1 CAGCCCACAACCA
84519 CAGC
1 CAGC
84523 AACACACCAC
Statistics
Matches: 45, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
10 8 0.18
11 1 0.02
12 1 0.02
13 35 0.78
ACGTcount: A:0.39, C:0.48, G:0.09, T:0.03
Consensus pattern (13 bp):
CAGCCCACAACCA
Left flanking sequence: Indices 83957 -- 84456
GGATACACCGCCGTTTGCGGGGACCGAGCCCCCAAGGTTGATGGGGGTAGTGCGTGCCCGAGGCG
AGAACGGGGTCTAGTAAGTAGTAAGCGATTATTGGTTTGTGTTGGTTTGTACGTATAGGTGTGAG
ACGAACTTTTCAAGGTGGAAACCTTGGGCCACAATGGATAAATACGTACTAGAAATCTAAAGGGA
TCAAGAACTAGCCAGTATATTCGTAAGGTAGTTTACCGGTATATTCGTAAGGCAGTACTGACCCA
AGCAAACCATGTCTTGACACACGTGACAACATACACGTGATCATAAACACGTGCAAACTTCAAAC
TCCTATACTAAAGCAAACCACGAAACCAGTGACTGAAAGTAACACGGGCACTCTGAACAGTAATC
AATATCCATGTGTACCCACATCATTTTACGCATCTCATCTTCCCCTTTTTATTCCATAAACCCAT
AACCCATAAGTTCTCACCATACCCATCAATATCCCACTACCACAG
Right flanking sequence: Indices 84523 -- 85022
AACACACCACACCACACACCCACTTACCCTCCCTACCCACACTCTCCTTCCTCTATTCCACCCTC
CTACCTCTTCTACCCATTCCACCCACCTACCTTCTTCTCCCACCTTTGCAGCAAAACACTGCGAA
CCTCACCACCAACCACCCCACCCCGACCCACTGCTGCCCACGCAAGATGGCGTTAAAGCTCAAAC
TAAACGTCGGAGGGGCCAATTCCGGGGACAATGCACTGAACTCAGGCTCTCCACAGCCGCCCGCG
GCGCTGCTGGCCCTGCCCGCGGCCCCGCTGCCCTCGCTCCCGAAGATCAAAATCAAGCGGCCGAA
ACCGCCGCCCTCAGACGCCCAGAAACCCACCAAGAAACTCAAGATCTCGTTGGGCGGGGCGAAAA
AGCTGCCGATTCCGAGCGCCACCCCTAAACAGCGGCTGGCGAAGCCCGCCACCCCCGGATCTCAA
CTTCCGAGGGTACGGATCAAACCAACACGCGTGCCGGGCGACGGG
Found at i:84610 original size:26 final size:26
Alignment explanation
Indices: 84577--84629 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
84567 TCCTTCCTCT
*
84577 ATTCCACCCTCCTACC-TCTTCTACCC
1 ATTCCACCCACCTACCTTCTTCT-CCC
84603 ATTCCACCCACCTACCTTCTTCTCCC
1 ATTCCACCCACCTACCTTCTTCTCCC
84629 A
1 A
84630 CCTTTGCAGC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 19 0.76
27 6 0.24
ACGTcount: A:0.17, C:0.53, G:0.00, T:0.30
Consensus pattern (26 bp):
ATTCCACCCACCTACCTTCTTCTCCC
Left flanking sequence: Indices 84077 -- 84576
TAGGTGTGAGACGAACTTTTCAAGGTGGAAACCTTGGGCCACAATGGATAAATACGTACTAGAAA
TCTAAAGGGATCAAGAACTAGCCAGTATATTCGTAAGGTAGTTTACCGGTATATTCGTAAGGCAG
TACTGACCCAAGCAAACCATGTCTTGACACACGTGACAACATACACGTGATCATAAACACGTGCA
AACTTCAAACTCCTATACTAAAGCAAACCACGAAACCAGTGACTGAAAGTAACACGGGCACTCTG
AACAGTAATCAATATCCATGTGTACCCACATCATTTTACGCATCTCATCTTCCCCTTTTTATTCC
ATAAACCCATAACCCATAAGTTCTCACCATACCCATCAATATCCCACTACCACAGCAGCCCACAA
CCACTGCCCATAACCACAGCCAACCACAGCCCACAACAACAGCCCACAACAACAGCAACACACCA
CACCACACACCCACTTACCCTCCCTACCCACACTCTCCTTCCTCT
Right flanking sequence: Indices 84630 -- 85129
CCTTTGCAGCAAAACACTGCGAACCTCACCACCAACCACCCCACCCCGACCCACTGCTGCCCACG
CAAGATGGCGTTAAAGCTCAAACTAAACGTCGGAGGGGCCAATTCCGGGGACAATGCACTGAACT
CAGGCTCTCCACAGCCGCCCGCGGCGCTGCTGGCCCTGCCCGCGGCCCCGCTGCCCTCGCTCCCG
AAGATCAAAATCAAGCGGCCGAAACCGCCGCCCTCAGACGCCCAGAAACCCACCAAGAAACTCAA
GATCTCGTTGGGCGGGGCGAAAAAGCTGCCGATTCCGAGCGCCACCCCTAAACAGCGGCTGGCGA
AGCCCGCCACCCCCGGATCTCAACTTCCGAGGGTACGGATCAAACCAACACGCGTGCCGGGCGAC
GGGTACGACCTGGAGGCGCCCGACATCGAGGAGGACCCGCTCATCGAGCAGGGGATGATGATCCG
CTTCTTGGACGACACCAACCTCGAGTTCGTCCAGTCGGCGGTCGA
Found at i:84812 original size:21 final size:20
Alignment explanation
Indices: 84776--84816 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 20
84766 CTCCACAGCC
* *
84776 GCCCGCGGCGCTGCTGGCCCT
1 GCCCGCGGCCCCGCT-GCCCT
84797 GCCCGCGGCCCCGCTGCCCT
1 GCCCGCGGCCCCGCTGCCCT
84817 CGCTCCCGAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.00, C:0.54, G:0.34, T:0.12
Consensus pattern (20 bp):
GCCCGCGGCCCCGCTGCCCT
Left flanking sequence: Indices 84276 -- 84775
TCAAACTCCTATACTAAAGCAAACCACGAAACCAGTGACTGAAAGTAACACGGGCACTCTGAACA
GTAATCAATATCCATGTGTACCCACATCATTTTACGCATCTCATCTTCCCCTTTTTATTCCATAA
ACCCATAACCCATAAGTTCTCACCATACCCATCAATATCCCACTACCACAGCAGCCCACAACCAC
TGCCCATAACCACAGCCAACCACAGCCCACAACAACAGCCCACAACAACAGCAACACACCACACC
ACACACCCACTTACCCTCCCTACCCACACTCTCCTTCCTCTATTCCACCCTCCTACCTCTTCTAC
CCATTCCACCCACCTACCTTCTTCTCCCACCTTTGCAGCAAAACACTGCGAACCTCACCACCAAC
CACCCCACCCCGACCCACTGCTGCCCACGCAAGATGGCGTTAAAGCTCAAACTAAACGTCGGAGG
GGCCAATTCCGGGGACAATGCACTGAACTCAGGCTCTCCACAGCC
Right flanking sequence: Indices 84817 -- 85316
CGCTCCCGAAGATCAAAATCAAGCGGCCGAAACCGCCGCCCTCAGACGCCCAGAAACCCACCAAG
AAACTCAAGATCTCGTTGGGCGGGGCGAAAAAGCTGCCGATTCCGAGCGCCACCCCTAAACAGCG
GCTGGCGAAGCCCGCCACCCCCGGATCTCAACTTCCGAGGGTACGGATCAAACCAACACGCGTGC
CGGGCGACGGGTACGACCTGGAGGCGCCCGACATCGAGGAGGACCCGCTCATCGAGCAGGGGATG
ATGATCCGCTTCTTGGACGACACCAACCTCGAGTTCGTCCAGTCGGCGGTCGAGCTGGGCGACTA
CCTGGGGCTCAACATCAAGTGGATCCTGAAGGACAAGGCGGTGGTCAACGTCAACGGCACCCTCT
ACTCGGCCCGGGTGGTCGACTTGCCCACCGTGACCGAGATCTTCAAAACCACCGACCGCAAGAAC
ATCTTCAAGACCCTCGACGTGCTGCAAATGCTCCTCGTGCTCAAA
Found at i:86255 original size:18 final size:18
Alignment explanation
Indices: 86232--86269 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
86222 GGAGGGTGAT
* *
86232 GATGGCGATGATGGGGAC
1 GATGGCGACGACGGGGAC
86250 GATGGCGACGACGGGGAC
1 GATGGCGACGACGGGGAC
86268 GA
1 GA
86270 CGGGGATAAC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.24, C:0.16, G:0.50, T:0.11
Consensus pattern (18 bp):
GATGGCGACGACGGGGAC
Left flanking sequence: Indices 85732 -- 86231
CCGCGGGCACCCCCATGGTGGTGGACGACGAGGACGAGTTCGAGGGCGTCAACCTCGAGGAGGAG
CTCAACAAGGTGCTCGACGGGGACGACGAGATGTTTGGCGACGAGCTCGGCGACCTCGTGGACCA
GCAGCCGCCCGAGGAGCTGGACGAGAGTCCCGACGACGACTCGGACGACGAGCCGGGCTCCAACC
AGCACGCCAAGATGTTGGAGGAGGAGATCGCGGACTTGGAGCAGGCGGTGGAGCTGAACAAGCGC
CGGTTGGACCTGGCGACGCTGCGGATGATGCGGATGAAGTTCCAGAACACGTATAATCTGCTCCG
GAGCTCGTTGGACCACAAGAAGCGCGCGCTCGCCAAGATCCTCGAGGAGGAGCGCAAGCACGACC
CGACCCAGCACCAGGGGGCGCTGGCGCTGGCGGCGGCGGCTGCGGCGGCTGCTGGCGTGCAGCAG
GTGGAGGCGCTGGACGAGGACGGCGAGGACGGGGAGGAGGGTGAT
Right flanking sequence: Indices 86270 -- 86769
CGGGGATAACGACATTGACGATTTGTTTTAGAGCTAGGGGATGACACCCACGGGCTAGTTTATAG
AGTAATGAAAAAGCTAACGGATGACACCCACGGGCTAGTTTATAGAGTAATGAAGAACTAACGGA
TGGTGGATGGGGGTGTTTGGAGTGGTTGAGAAAACTGTTGAGACAACTGTTGAGACAAGTGTTTG
TGACAAGTGTTTGTGACAAGTCTGTTGGTGAATACTGTGGTCAACTCTGTTGGTGGCAATGTAAT
TGAGATTGTAAAACTCTCATTGTACCCACTGAGATCTTAGTGATTTCACTATCTTAATGATTAAC
CGTCTTGTGATTCCACTATCTTAATGATTAACCGTCTTGTGATTTCACTATCTTAATGATTTAAC
CATCTCGTGATGATTTTAACTTACAACGATCTCACTATTATATGATGGAATGAAGTATCGCTATT
TTATAATGATTTCACCATTCTATAATGGATTCTTTAGTTTATAAC
Found at i:86365 original size:45 final size:44
Alignment explanation
Indices: 86308--86401 Score: 170
Period size: 45 Copynumber: 2.1 Consensus size: 44
86298 TAGAGCTAGG
86308 GGATGACACCCACGGGCTAGTTTATAGAGTAATGAAAAAGCTAAC
1 GGATGACACCCACGGGCTAGTTTATAGAGTAATGAAAAA-CTAAC
*
86353 GGATGACACCCACGGGCTAGTTTATAGAGTAATGAAGAACTAAC
1 GGATGACACCCACGGGCTAGTTTATAGAGTAATGAAAAACTAAC
86397 GGATG
1 GGATG
86402 GTGGATGGGG
Statistics
Matches: 48, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
44 10 0.21
45 38 0.79
ACGTcount: A:0.36, C:0.17, G:0.27, T:0.20
Consensus pattern (44 bp):
GGATGACACCCACGGGCTAGTTTATAGAGTAATGAAAAACTAAC
Left flanking sequence: Indices 85808 -- 86307
GCTCGACGGGGACGACGAGATGTTTGGCGACGAGCTCGGCGACCTCGTGGACCAGCAGCCGCCCG
AGGAGCTGGACGAGAGTCCCGACGACGACTCGGACGACGAGCCGGGCTCCAACCAGCACGCCAAG
ATGTTGGAGGAGGAGATCGCGGACTTGGAGCAGGCGGTGGAGCTGAACAAGCGCCGGTTGGACCT
GGCGACGCTGCGGATGATGCGGATGAAGTTCCAGAACACGTATAATCTGCTCCGGAGCTCGTTGG
ACCACAAGAAGCGCGCGCTCGCCAAGATCCTCGAGGAGGAGCGCAAGCACGACCCGACCCAGCAC
CAGGGGGCGCTGGCGCTGGCGGCGGCGGCTGCGGCGGCTGCTGGCGTGCAGCAGGTGGAGGCGCT
GGACGAGGACGGCGAGGACGGGGAGGAGGGTGATGATGGCGATGATGGGGACGATGGCGACGACG
GGGACGACGGGGATAACGACATTGACGATTTGTTTTAGAGCTAGG
Right flanking sequence: Indices 86402 -- 86901
GTGGATGGGGGTGTTTGGAGTGGTTGAGAAAACTGTTGAGACAACTGTTGAGACAAGTGTTTGTG
ACAAGTGTTTGTGACAAGTCTGTTGGTGAATACTGTGGTCAACTCTGTTGGTGGCAATGTAATTG
AGATTGTAAAACTCTCATTGTACCCACTGAGATCTTAGTGATTTCACTATCTTAATGATTAACCG
TCTTGTGATTCCACTATCTTAATGATTAACCGTCTTGTGATTTCACTATCTTAATGATTTAACCA
TCTCGTGATGATTTTAACTTACAACGATCTCACTATTATATGATGGAATGAAGTATCGCTATTTT
ATAATGATTTCACCATTCTATAATGGATTCTTTAGTTTATAACGACTTCACTATCTTGAATGAAT
CCATTAGCATGGGAGTGATTGGAAATGACCGGTGTTGGCTCCCATACCCGTTGTGGATTTAACCA
ATTCCGGTGGCCATCTAATTATGAGGTTACAGGAGTGTAAACCTT
Found at i:86455 original size:12 final size:12
Alignment explanation
Indices: 86424--86462 Score: 60
Period size: 12 Copynumber: 3.2 Consensus size: 12
86414 GTTTGGAGTG
*
86424 GTTGAGAAAACT
1 GTTGAGACAACT
86436 GTTGAGACAACT
1 GTTGAGACAACT
*
86448 GTTGAGACAAGT
1 GTTGAGACAACT
86460 GTT
1 GTT
86463 TGTGACAAGT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
12 25 1.00
ACGTcount: A:0.33, C:0.10, G:0.28, T:0.28
Consensus pattern (12 bp):
GTTGAGACAACT
Left flanking sequence: Indices 85924 -- 86423
ACCAGCACGCCAAGATGTTGGAGGAGGAGATCGCGGACTTGGAGCAGGCGGTGGAGCTGAACAAG
CGCCGGTTGGACCTGGCGACGCTGCGGATGATGCGGATGAAGTTCCAGAACACGTATAATCTGCT
CCGGAGCTCGTTGGACCACAAGAAGCGCGCGCTCGCCAAGATCCTCGAGGAGGAGCGCAAGCACG
ACCCGACCCAGCACCAGGGGGCGCTGGCGCTGGCGGCGGCGGCTGCGGCGGCTGCTGGCGTGCAG
CAGGTGGAGGCGCTGGACGAGGACGGCGAGGACGGGGAGGAGGGTGATGATGGCGATGATGGGGA
CGATGGCGACGACGGGGACGACGGGGATAACGACATTGACGATTTGTTTTAGAGCTAGGGGATGA
CACCCACGGGCTAGTTTATAGAGTAATGAAAAAGCTAACGGATGACACCCACGGGCTAGTTTATA
GAGTAATGAAGAACTAACGGATGGTGGATGGGGGTGTTTGGAGTG
Right flanking sequence: Indices 86463 -- 86962
TGTGACAAGTGTTTGTGACAAGTCTGTTGGTGAATACTGTGGTCAACTCTGTTGGTGGCAATGTA
ATTGAGATTGTAAAACTCTCATTGTACCCACTGAGATCTTAGTGATTTCACTATCTTAATGATTA
ACCGTCTTGTGATTCCACTATCTTAATGATTAACCGTCTTGTGATTTCACTATCTTAATGATTTA
ACCATCTCGTGATGATTTTAACTTACAACGATCTCACTATTATATGATGGAATGAAGTATCGCTA
TTTTATAATGATTTCACCATTCTATAATGGATTCTTTAGTTTATAACGACTTCACTATCTTGAAT
GAATCCATTAGCATGGGAGTGATTGGAAATGACCGGTGTTGGCTCCCATACCCGTTGTGGATTTA
ACCAATTCCGGTGGCCATCTAATTATGAGGTTACAGGAGTGTAAACCTTAATAGGTGACACAAAC
CACATTCAATATTGTTACACTATAGAATAGGAATTAGATGGGAGT
Found at i:86462 original size:24 final size:25
Alignment explanation
Indices: 86424--86485 Score: 63
Period size: 24 Copynumber: 2.5 Consensus size: 25
86414 GTTTGGAGTG
* *
86424 GTTGAGAAAACTG-TTGAGACAACT
1 GTTGAGACAAGTGTTTGAGACAACT
* *
86448 GTTGAGACAAGTGTTTGTGACAAGT
1 GTTGAGACAAGTGTTTGAGACAACT
*
86473 GTTTGTGACAAGT
1 G-TTGAGACAAGT
86486 CTGTTGGTGA
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
24 11 0.35
25 10 0.32
26 10 0.32
ACGTcount: A:0.31, C:0.10, G:0.29, T:0.31
Consensus pattern (25 bp):
GTTGAGACAAGTGTTTGAGACAACT
Left flanking sequence: Indices 85924 -- 86423
ACCAGCACGCCAAGATGTTGGAGGAGGAGATCGCGGACTTGGAGCAGGCGGTGGAGCTGAACAAG
CGCCGGTTGGACCTGGCGACGCTGCGGATGATGCGGATGAAGTTCCAGAACACGTATAATCTGCT
CCGGAGCTCGTTGGACCACAAGAAGCGCGCGCTCGCCAAGATCCTCGAGGAGGAGCGCAAGCACG
ACCCGACCCAGCACCAGGGGGCGCTGGCGCTGGCGGCGGCGGCTGCGGCGGCTGCTGGCGTGCAG
CAGGTGGAGGCGCTGGACGAGGACGGCGAGGACGGGGAGGAGGGTGATGATGGCGATGATGGGGA
CGATGGCGACGACGGGGACGACGGGGATAACGACATTGACGATTTGTTTTAGAGCTAGGGGATGA
CACCCACGGGCTAGTTTATAGAGTAATGAAAAAGCTAACGGATGACACCCACGGGCTAGTTTATA
GAGTAATGAAGAACTAACGGATGGTGGATGGGGGTGTTTGGAGTG
Right flanking sequence: Indices 86486 -- 86985
CTGTTGGTGAATACTGTGGTCAACTCTGTTGGTGGCAATGTAATTGAGATTGTAAAACTCTCATT
GTACCCACTGAGATCTTAGTGATTTCACTATCTTAATGATTAACCGTCTTGTGATTCCACTATCT
TAATGATTAACCGTCTTGTGATTTCACTATCTTAATGATTTAACCATCTCGTGATGATTTTAACT
TACAACGATCTCACTATTATATGATGGAATGAAGTATCGCTATTTTATAATGATTTCACCATTCT
ATAATGGATTCTTTAGTTTATAACGACTTCACTATCTTGAATGAATCCATTAGCATGGGAGTGAT
TGGAAATGACCGGTGTTGGCTCCCATACCCGTTGTGGATTTAACCAATTCCGGTGGCCATCTAAT
TATGAGGTTACAGGAGTGTAAACCTTAATAGGTGACACAAACCACATTCAATATTGTTACACTAT
AGAATAGGAATTAGATGGGAGTCTCCCGACTATTGGGCATTCCAT
Found at i:86495 original size:15 final size:13
Alignment explanation
Indices: 86453--86485 Score: 66
Period size: 13 Copynumber: 2.5 Consensus size: 13
86443 CAACTGTTGA
86453 GACAAGTGTTTGT
1 GACAAGTGTTTGT
86466 GACAAGTGTTTGT
1 GACAAGTGTTTGT
86479 GACAAGT
1 GACAAGT
86486 CTGTTGGTGA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.27, C:0.09, G:0.30, T:0.33
Consensus pattern (13 bp):
GACAAGTGTTTGT
Left flanking sequence: Indices 85953 -- 86452
ATCGCGGACTTGGAGCAGGCGGTGGAGCTGAACAAGCGCCGGTTGGACCTGGCGACGCTGCGGAT
GATGCGGATGAAGTTCCAGAACACGTATAATCTGCTCCGGAGCTCGTTGGACCACAAGAAGCGCG
CGCTCGCCAAGATCCTCGAGGAGGAGCGCAAGCACGACCCGACCCAGCACCAGGGGGCGCTGGCG
CTGGCGGCGGCGGCTGCGGCGGCTGCTGGCGTGCAGCAGGTGGAGGCGCTGGACGAGGACGGCGA
GGACGGGGAGGAGGGTGATGATGGCGATGATGGGGACGATGGCGACGACGGGGACGACGGGGATA
ACGACATTGACGATTTGTTTTAGAGCTAGGGGATGACACCCACGGGCTAGTTTATAGAGTAATGA
AAAAGCTAACGGATGACACCCACGGGCTAGTTTATAGAGTAATGAAGAACTAACGGATGGTGGAT
GGGGGTGTTTGGAGTGGTTGAGAAAACTGTTGAGACAACTGTTGA
Right flanking sequence: Indices 86486 -- 86985
CTGTTGGTGAATACTGTGGTCAACTCTGTTGGTGGCAATGTAATTGAGATTGTAAAACTCTCATT
GTACCCACTGAGATCTTAGTGATTTCACTATCTTAATGATTAACCGTCTTGTGATTCCACTATCT
TAATGATTAACCGTCTTGTGATTTCACTATCTTAATGATTTAACCATCTCGTGATGATTTTAACT
TACAACGATCTCACTATTATATGATGGAATGAAGTATCGCTATTTTATAATGATTTCACCATTCT
ATAATGGATTCTTTAGTTTATAACGACTTCACTATCTTGAATGAATCCATTAGCATGGGAGTGAT
TGGAAATGACCGGTGTTGGCTCCCATACCCGTTGTGGATTTAACCAATTCCGGTGGCCATCTAAT
TATGAGGTTACAGGAGTGTAAACCTTAATAGGTGACACAAACCACATTCAATATTGTTACACTAT
AGAATAGGAATTAGATGGGAGTCTCCCGACTATTGGGCATTCCAT
Found at i:86612 original size:32 final size:32
Alignment explanation
Indices: 86564--86670 Score: 169
Period size: 32 Copynumber: 3.3 Consensus size: 32
86554 CCCACTGAGA
86564 TCTTAGTGATTTCACTATCTTAATGATTAACCG
1 TCTT-GTGATTTCACTATCTTAATGATTAACCG
*
86597 TCTTGTGATTCCACTATCTTAATGATTAACCG
1 TCTTGTGATTTCACTATCTTAATGATTAACCG
*
86629 TCTTGTGATTTCACTATCTTAATGATTTAACCA
1 TCTTGTGATTTCACTATCTTAATGA-TTAACCG
*
86662 TCTCGTGAT
1 TCTTGTGAT
86671 GATTTTAACT
Statistics
Matches: 69, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
32 51 0.74
33 18 0.26
ACGTcount: A:0.25, C:0.20, G:0.12, T:0.43
Consensus pattern (32 bp):
TCTTGTGATTTCACTATCTTAATGATTAACCG
Left flanking sequence: Indices 86064 -- 86563
TTGGACCACAAGAAGCGCGCGCTCGCCAAGATCCTCGAGGAGGAGCGCAAGCACGACCCGACCCA
GCACCAGGGGGCGCTGGCGCTGGCGGCGGCGGCTGCGGCGGCTGCTGGCGTGCAGCAGGTGGAGG
CGCTGGACGAGGACGGCGAGGACGGGGAGGAGGGTGATGATGGCGATGATGGGGACGATGGCGAC
GACGGGGACGACGGGGATAACGACATTGACGATTTGTTTTAGAGCTAGGGGATGACACCCACGGG
CTAGTTTATAGAGTAATGAAAAAGCTAACGGATGACACCCACGGGCTAGTTTATAGAGTAATGAA
GAACTAACGGATGGTGGATGGGGGTGTTTGGAGTGGTTGAGAAAACTGTTGAGACAACTGTTGAG
ACAAGTGTTTGTGACAAGTGTTTGTGACAAGTCTGTTGGTGAATACTGTGGTCAACTCTGTTGGT
GGCAATGTAATTGAGATTGTAAAACTCTCATTGTACCCACTGAGA
Right flanking sequence: Indices 86671 -- 87170
GATTTTAACTTACAACGATCTCACTATTATATGATGGAATGAAGTATCGCTATTTTATAATGATT
TCACCATTCTATAATGGATTCTTTAGTTTATAACGACTTCACTATCTTGAATGAATCCATTAGCA
TGGGAGTGATTGGAAATGACCGGTGTTGGCTCCCATACCCGTTGTGGATTTAACCAATTCCGGTG
GCCATCTAATTATGAGGTTACAGGAGTGTAAACCTTAATAGGTGACACAAACCACATTCAATATT
GTTACACTATAGAATAGGAATTAGATGGGAGTCTCCCGACTATTGGGCATTCCATCTCATTCCTT
AAACGTATTTCGTACCCTTCGATCTGAGTAAGAGATCCCCCATGGCTAAGAACGACAGGAAAATC
ACCAACGGTGCCCTTTTTCCTTACTTCTTGTCCTGAAGTCGGGTGGCAACAACCTGAATTCTACT
CTGGCGTCAGTCAACTTAGGCTCGACAGATTGATTGTTGGCTCTC
Found at i:86664 original size:17 final size:17
Alignment explanation
Indices: 86563--86664 Score: 68
Period size: 16 Copynumber: 6.2 Consensus size: 17
86553 ACCCACTGAG
* * *
86563 ATCTTAGTGATTTCACT
1 ATCTTAATGATTTAACC
86580 ATCTTAATGA-TTAACC
1 ATCTTAATGATTTAACC
* * ** *
86596 GTCTT-GTGATTCCACT
1 ATCTTAATGATTTAACC
86612 ATCTTAATGA-TTAACC
1 ATCTTAATGATTTAACC
* * * *
86628 GTCTT-GTGATTTCACT
1 ATCTTAATGATTTAACC
86644 ATCTTAATGATTTAACC
1 ATCTTAATGATTTAACC
86661 ATCT
1 ATCT
86665 CGTGATGATT
Statistics
Matches: 60, Mismatches: 21, Indels: 8
0.67 0.24 0.09
Matches are distributed among these distances:
15 6 0.10
16 30 0.50
17 24 0.40
ACGTcount: A:0.26, C:0.20, G:0.11, T:0.43
Consensus pattern (17 bp):
ATCTTAATGATTTAACC
Left flanking sequence: Indices 86063 -- 86562
GTTGGACCACAAGAAGCGCGCGCTCGCCAAGATCCTCGAGGAGGAGCGCAAGCACGACCCGACCC
AGCACCAGGGGGCGCTGGCGCTGGCGGCGGCGGCTGCGGCGGCTGCTGGCGTGCAGCAGGTGGAG
GCGCTGGACGAGGACGGCGAGGACGGGGAGGAGGGTGATGATGGCGATGATGGGGACGATGGCGA
CGACGGGGACGACGGGGATAACGACATTGACGATTTGTTTTAGAGCTAGGGGATGACACCCACGG
GCTAGTTTATAGAGTAATGAAAAAGCTAACGGATGACACCCACGGGCTAGTTTATAGAGTAATGA
AGAACTAACGGATGGTGGATGGGGGTGTTTGGAGTGGTTGAGAAAACTGTTGAGACAACTGTTGA
GACAAGTGTTTGTGACAAGTGTTTGTGACAAGTCTGTTGGTGAATACTGTGGTCAACTCTGTTGG
TGGCAATGTAATTGAGATTGTAAAACTCTCATTGTACCCACTGAG
Right flanking sequence: Indices 86665 -- 87164
CGTGATGATTTTAACTTACAACGATCTCACTATTATATGATGGAATGAAGTATCGCTATTTTATA
ATGATTTCACCATTCTATAATGGATTCTTTAGTTTATAACGACTTCACTATCTTGAATGAATCCA
TTAGCATGGGAGTGATTGGAAATGACCGGTGTTGGCTCCCATACCCGTTGTGGATTTAACCAATT
CCGGTGGCCATCTAATTATGAGGTTACAGGAGTGTAAACCTTAATAGGTGACACAAACCACATTC
AATATTGTTACACTATAGAATAGGAATTAGATGGGAGTCTCCCGACTATTGGGCATTCCATCTCA
TTCCTTAAACGTATTTCGTACCCTTCGATCTGAGTAAGAGATCCCCCATGGCTAAGAACGACAGG
AAAATCACCAACGGTGCCCTTTTTCCTTACTTCTTGTCCTGAAGTCGGGTGGCAACAACCTGAAT
TCTACTCTGGCGTCAGTCAACTTAGGCTCGACAGATTGATTGTTG
Found at i:87820 original size:13 final size:13
Alignment explanation
Indices: 87802--87828 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
87792 ACAACTCTAA
87802 GCAGCTATAAGGG
1 GCAGCTATAAGGG
87815 GCAGCTATAAGGG
1 GCAGCTATAAGGG
87828 G
1 G
87829 AACGGCGTGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.15, G:0.41, T:0.15
Consensus pattern (13 bp):
GCAGCTATAAGGG
Left flanking sequence: Indices 87302 -- 87801
CAATCACCTCCTCCTGCTTGTGGGTCCCGAACTCGTTCTCCAACTCCTCCTTCAGCGCCTCCTGG
TTGATATCCTCCAGGCCCCGTTGCCGCGACACAAACACCTTGTAGATCTCCACCACCTCGTTCAA
CAGCTCGTGCTTGCCGTGCTTGAACGCCTCGGCTTTGCCCTTGTCTTCGATGATGACCGCGAAGT
CAGCGTCTTTGCCCTTGTAGAAACAGTATTCCGGCATTGGCGGTGGTGTGGAGATTTGCTGTCTT
ATAAGCTCTGGTTTGAGCACTGGAGCTTGCTATTGCTACGGACCCGTGGGGTAGAGTAGGGAGGC
AAAAGGAGTAGAGATATGCGATTGTGTCACATTTTGGTATTGTGGTTCCACATTTGATCGCAAAC
CGTGTTCTCGTTTCTCGTGTCTCGTCTCGTTTCAAATCGTGTTTCAGAAACATTCTCACACCGAA
ACTGTTGCAGATTACCGAAAGCGAACGGTAAAGGGACAACTCTAA
Right flanking sequence: Indices 87829 -- 88328
AACGGCGTGTCATAGTCCCCATCAATGTGGTCTCCCTTCGCGTGTATGGTTGCTCTACAATGTTT
CACCCTTGCTCGGCTTATTTTTGCCTATTGCACCAGGCAGAGACCACCGCTACGCAAGAGCATGT
CCGCTGGGTTTCGCTGGGGAACCGCGGTGGGTTTGGGTGCCGCCTTCTTCATGGTGCTGGTTTAA
TAGTCAATGCATGGTTAAAACACAGAACAACCTTCTAAAAGCCCAAACTGCCGTAGATCGGTGTT
CGAACGCACCCCTGGCCGCATACCCCTGGCTGCCCTGGCCACACACCCGACCGCCAAGACCATTC
CCACCCTACAACTACCCGATTCGTCTGGCAAAGGGCCCACCGCGGCCTCGCGCTCGCGTTTCAAC
CTACGGCTGCAAACTACCTAATCGGGACAGCAAAGGGGACCCACCCACCAGGTATAAAACCACGG
ACCACCACGCTGAAAACCCCATCAACCATGAAGTTCTCCACTGCC
Found at i:88745 original size:21 final size:21
Alignment explanation
Indices: 88697--88773 Score: 79
Period size: 21 Copynumber: 3.8 Consensus size: 21
88687 TCCAGTTCGA
* **
88697 CTCCCTACTCT-CCCACCCAT
1 CTCCCTAATCTCCCCATGCAT
*
88717 CT-CCTAATCTCCCCAT-CTGT
1 CTCCCTAATCTCCCCATGC-AT
88737 CTCCCTAATCTCCCCATGCAT
1 CTCCCTAATCTCCCCATGCAT
*
88758 CTCCCTACTCTCCCCA
1 CTCCCTAATCTCCCCA
88774 CCCACTTCTT
Statistics
Matches: 48, Mismatches: 5, Indels: 7
0.80 0.08 0.12
Matches are distributed among these distances:
19 8 0.17
20 9 0.19
21 30 0.62
22 1 0.02
ACGTcount: A:0.16, C:0.53, G:0.03, T:0.29
Consensus pattern (21 bp):
CTCCCTAATCTCCCCATGCAT
Left flanking sequence: Indices 88197 -- 88696
GGCCTCGCGCTCGCGTTTCAACCTACGGCTGCAAACTACCTAATCGGGACAGCAAAGGGGACCCA
CCCACCAGGTATAAAACCACGGACCACCACGCTGAAAACCCCATCAACCATGAAGTTCTCCACTG
CCTTTGCCGCTTGCCTCGCTGCCGTCTCCGCCGTCGCTGTCCCCAAGACGTTTGTCCTCAAGGAG
GGGGAGGTGGCGTACCTTGCCAAGAACGAGGAGGGCGAGCAGGCGATTGTGATAGTCGAGCCCGA
GGCTGCCCAGGAGGGCATGGCCAAGCGCTGGTCGTGGTTGGACTGGAGAATGTTCGAGCCCATCT
GTTAAGGAATAGCCTACGGAATAGCCTACTTTTAAGTACTCAATAAACCGAATTGTCGAATCAGA
GAATGTAGACAAAGCCGGCATCGACCCCACTTTTTGTCCATTTACGGCTTTGTGGGGCTTAGTCA
GTCACAAGACACCACGACCCCACATCCACCACTCTTCCAGTTCGA
Right flanking sequence: Indices 88774 -- 89273
CCCACTTCTTTGCCACTTTTCCATTCGCCCGATCAGCTGAAAATCAACCCCAGACCCCAGATCCC
AACATCCATTTTAACCGAGGCCGAGGCGGGGGGCGAGTGGCGACACCAAGTGTGGCGGCCCCACA
GAAAAATAAGCCTATAAACACTAAACCACACCCTCGAGTAAACACCTCGAGCCCGGAAACAGCCC
CGTCTACCCACAATTGACCCCTCCCGCTCTCCCGTCGTCCCGGTTTCCCCCATCCCGATAAACGT
TTTCCCAGGGCCCGCAACCGTTCCATGCCGGCGCTCATAACGCTCGCAACGTCAACGGTTATCCC
TACCAATGGCAATCGCCAGATACAGCGCCCCCCGCTCGTGGCGCTGGCCAACACACGCTACCAAA
CGGCTCTAAAATCCACTAAAGCACCCCATCCCCCACCGCACCCCCCACCACACCCCCCATCACCC
TCGTACTTCCACTCCTTGCGTACCTACCCCGTCTTCGCACCAACA
Found at i:89219 original size:11 final size:12
Alignment explanation
Indices: 89193--89222 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
89183 AGCACCCCAT
*
89193 CCCCCACCGCAC
1 CCCCCACCACAC
89205 CCCCCACCACAC
1 CCCCCACCACAC
89217 CCCCCA
1 CCCCCA
89223 TCACCCTCGT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.20, C:0.77, G:0.03, T:0.00
Consensus pattern (12 bp):
CCCCCACCACAC
Left flanking sequence: Indices 88693 -- 89192
TCGACTCCCTACTCTCCCACCCATCTCCTAATCTCCCCATCTGTCTCCCTAATCTCCCCATGCAT
CTCCCTACTCTCCCCACCCACTTCTTTGCCACTTTTCCATTCGCCCGATCAGCTGAAAATCAACC
CCAGACCCCAGATCCCAACATCCATTTTAACCGAGGCCGAGGCGGGGGGCGAGTGGCGACACCAA
GTGTGGCGGCCCCACAGAAAAATAAGCCTATAAACACTAAACCACACCCTCGAGTAAACACCTCG
AGCCCGGAAACAGCCCCGTCTACCCACAATTGACCCCTCCCGCTCTCCCGTCGTCCCGGTTTCCC
CCATCCCGATAAACGTTTTCCCAGGGCCCGCAACCGTTCCATGCCGGCGCTCATAACGCTCGCAA
CGTCAACGGTTATCCCTACCAATGGCAATCGCCAGATACAGCGCCCCCCGCTCGTGGCGCTGGCC
AACACACGCTACCAAACGGCTCTAAAATCCACTAAAGCACCCCAT
Right flanking sequence: Indices 89223 -- 89722
TCACCCTCGTACTTCCACTCCTTGCGTACCTACCCCGTCTTCGCACCAACATTCGCACGTGCAAA
CGGTCAGGAGGCCAACCGAGGAAGGACCACCACGCCCACCACGGCCACGCCGGCCACAGCGCCCA
GTACAACCCGTTACTCTCCCTCTCCCCTACCCACCACACCCACCCGAGCCCGCCAGCTCCCCGCG
CCCGTCCCGACCCCCCCTCCTTTTTCACATGATCGCAACTACCCCACAACTATATATAGTGAAAA
GTCTTGCCCAAACCGTAAACCACCATGACCACTCTCGAACTCGCGGCCGCCGCCGTCATGGGCTC
GCAGTTGATCGAGGCCAAGTACCACGTCAAGGAGGACGTGCTCCTCGCACAGAAGACCGTGCGCG
AGGCCCTCCCCTTCCTCTACCGCACCTACCGCGGGCGGGTGTCGTACTGGTACCCGTTCGAGGAC
GCTGCGCGCAAGTACAAGAACAAGCCCGCAGTCCTGTTTCCCCGC
Found at i:92732 original size:20 final size:20
Alignment explanation
Indices: 92638--92811 Score: 177
Period size: 19 Copynumber: 9.1 Consensus size: 20
92628 GGCGATTGCA
*
92638 GGGAATCAAAGTGTAGAATT
1 GGGAAGCAAAGTGTAGAATT
*
92658 -GGAAGC-AAGTGAAGAA-T
1 GGGAAGCAAAGTGTAGAATT
92675 -GGAAGCAAAGTGTAGAA-T
1 GGGAAGCAAAGTGTAGAATT
*
92693 GGGAAGC-AAGTGTAAAATT
1 GGGAAGCAAAGTGTAGAATT
* * *
92712 GGGAAACAAGGTGTAGTATT
1 GGGAAGCAAAGTGTAGAATT
* * *
92732 GGGAGGCAGAGTGTAGGATT
1 GGGAAGCAAAGTGTAGAATT
*
92752 GGGAAGC-AAGTGTAAAATT
1 GGGAAGCAAAGTGTAGAATT
92771 GGGAATG-AAAGTGTAGAATT
1 GGGAA-GCAAAGTGTAGAATT
*
92791 -GGAAGCAAAGTGTAGGATT
1 GGGAAGCAAAGTGTAGAATT
92810 GG
1 GG
92812 TCACTGCTAG
Statistics
Matches: 127, Mismatches: 19, Indels: 16
0.78 0.12 0.10
Matches are distributed among these distances:
17 7 0.06
18 29 0.23
19 48 0.38
20 43 0.34
ACGTcount: A:0.39, C:0.05, G:0.36, T:0.21
Consensus pattern (20 bp):
GGGAAGCAAAGTGTAGAATT
Left flanking sequence: Indices 92138 -- 92637
TGCAAGAGTAACGACTGATGCGCAGGGGTGGGCTATTTGGGTTCTGTTTGGGTATTGATTTTTAG
TGTTGCCTGGTTATATCAATCTAAGTGATACACAGCTCCACTGCGGTTTGCATTCGGAATTGCAA
GTGATGCCGAGGAACAGTTTGATGATGATTCGAATCTAAAGTTAGCCAAGATGAGACGGCTGCGG
TACACGACGCGAAACATAGAGTGAAGAAGAACCTTTTTGAATTAAGCCAATGGATCATGATTAGC
GCGGAGCTTTTCATGCCATACACCACACTGGAAAATGATGGACTGTATTTTGGACGTTCAAGTGC
TTAGGTCGTTCCCACGATGATAACCCCAATGCCTACGTTATTGGGCGTATGTGCCTAAAAAATAA
GGCAGGGGCAAGCCGTTGCATTTGGTTCATTTGAGTGGACTACGCGTTATTGGCCGTGGTCGCTA
GAGACTTCACTTGCAGGCGGGTGCAGCCCTTTGCAGGCGATTGCA
Right flanking sequence: Indices 92812 -- 93311
TCACTGCTAGCTTGTATTGATTCAAGCCTTAGGTGTTTGCCTACGATAGTTGATAGGTCAGTAAT
CTTTTGTCACTAACCAATCCTGACAAGATAGTCAAATGACAGATGATGCGACTAAAGTGAATTGT
ATGAATCATCGCGAATTTTAGCCGAGACATACGGTGTTAAGAATGTCATCCGATGACACAACTAG
CTCGAACGTAAACTAGCATGTGATCAGTCAATAGTACCAACCACTCAAACGACCCTTCACTTTCA
CCTCCTCGTCTAAGTCAATCAGCTTTTCTTTTCTTTAGCTATTCTGATTCAGCATCAGTTACCGA
ATGCCTGTTGACATTCATGCCTCTTCTACCAACCTTGCTTATTGCATTCATGCCTCCCACCACCC
TTGCTTGTTAACATTCATGCTTCTCCCACCACCCTCCAACTATCCTCTTACCACCCCACACCACC
CTCCACTTACGCCACAAGTTCCCCCTTCAACACCAGCACTCTCCA
Found at i:92760 original size:59 final size:58
Alignment explanation
Indices: 92646--92811 Score: 205
Period size: 59 Copynumber: 2.9 Consensus size: 58
92636 CAGGGAATCA
* * * *
92646 AAGTGTAGAATT-GGAAGC-AAGTGAAGAA-TGGAAGCAAAGTGTA-GAATGGGAAGC
1 AAGTGTAAAATTGGGAAACAAAGTGTAGAATTGGAAGCAAAGTGTAGGATTGGGAAGC
* * * *
92700 AAGTGTAAAATTGGGAAACAAGGTGTAGTATTGGGAGGCAGAGTGTAGGATTGGGAAGC
1 AAGTGTAAAATTGGGAAACAAAGTGTAGAATT-GGAAGCAAAGTGTAGGATTGGGAAGC
**
92759 AAGTGTAAAATTGGGAATGAAAGTGTAGAATTGGAAGCAAAGTGTAGGATTGG
1 AAGTGTAAAATTGGGAAACAAAGTGTAGAATTGGAAGCAAAGTGTAGGATTGG
92812 TCACTGCTAG
Statistics
Matches: 93, Mismatches: 14, Indels: 6
0.82 0.12 0.05
Matches are distributed among these distances:
54 11 0.12
55 5 0.05
56 7 0.08
57 1 0.01
58 31 0.33
59 38 0.41
ACGTcount: A:0.39, C:0.04, G:0.36, T:0.21
Consensus pattern (58 bp):
AAGTGTAAAATTGGGAAACAAAGTGTAGAATTGGAAGCAAAGTGTAGGATTGGGAAGC
Left flanking sequence: Indices 92146 -- 92645
TAACGACTGATGCGCAGGGGTGGGCTATTTGGGTTCTGTTTGGGTATTGATTTTTAGTGTTGCCT
GGTTATATCAATCTAAGTGATACACAGCTCCACTGCGGTTTGCATTCGGAATTGCAAGTGATGCC
GAGGAACAGTTTGATGATGATTCGAATCTAAAGTTAGCCAAGATGAGACGGCTGCGGTACACGAC
GCGAAACATAGAGTGAAGAAGAACCTTTTTGAATTAAGCCAATGGATCATGATTAGCGCGGAGCT
TTTCATGCCATACACCACACTGGAAAATGATGGACTGTATTTTGGACGTTCAAGTGCTTAGGTCG
TTCCCACGATGATAACCCCAATGCCTACGTTATTGGGCGTATGTGCCTAAAAAATAAGGCAGGGG
CAAGCCGTTGCATTTGGTTCATTTGAGTGGACTACGCGTTATTGGCCGTGGTCGCTAGAGACTTC
ACTTGCAGGCGGGTGCAGCCCTTTGCAGGCGATTGCAGGGAATCA
Right flanking sequence: Indices 92812 -- 93311
TCACTGCTAGCTTGTATTGATTCAAGCCTTAGGTGTTTGCCTACGATAGTTGATAGGTCAGTAAT
CTTTTGTCACTAACCAATCCTGACAAGATAGTCAAATGACAGATGATGCGACTAAAGTGAATTGT
ATGAATCATCGCGAATTTTAGCCGAGACATACGGTGTTAAGAATGTCATCCGATGACACAACTAG
CTCGAACGTAAACTAGCATGTGATCAGTCAATAGTACCAACCACTCAAACGACCCTTCACTTTCA
CCTCCTCGTCTAAGTCAATCAGCTTTTCTTTTCTTTAGCTATTCTGATTCAGCATCAGTTACCGA
ATGCCTGTTGACATTCATGCCTCTTCTACCAACCTTGCTTATTGCATTCATGCCTCCCACCACCC
TTGCTTGTTAACATTCATGCTTCTCCCACCACCCTCCAACTATCCTCTTACCACCCCACACCACC
CTCCACTTACGCCACAAGTTCCCCCTTCAACACCAGCACTCTCCA
Found at i:92765 original size:39 final size:38
Alignment explanation
Indices: 92638--92811 Score: 169
Period size: 39 Copynumber: 4.6 Consensus size: 38
92628 GGCGATTGCA
* *
92638 GGGAATCAAAGTGTAGAATT-GGAAGCAAGTGAAGAA-T
1 GGGAAGCAAAGTGTAG-ATTGGGAAGCAAGTGTAGAATT
* *
92675 -GGAAGCAAAGTGTAGAATGGGAAGCAAGTGTAAAATT
1 GGGAAGCAAAGTGTAGATTGGGAAGCAAGTGTAGAATT
* * * *
92712 GGGAAACAAGGTGTAGTATTGGGAGGCAGAGTGTAGGATT
1 GGGAAGCAAAGTGTAG-ATTGGGAAGCA-AGTGTAGAATT
* *
92752 GGGAAGC-AAGTGTAAAATTGGGAATGAAAGTGTAGAATT
1 GGGAAGCAAAGTGT-AGATTGGGAA-GCAAGTGTAGAATT
92791 -GGAAGCAAAGTGTAGGATTGG
1 GGGAAGCAAAGTGTA-GATTGG
92812 TCACTGCTAG
Statistics
Matches: 111, Mismatches: 17, Indels: 16
0.77 0.12 0.11
Matches are distributed among these distances:
35 2 0.02
36 28 0.25
37 1 0.01
38 20 0.18
39 42 0.38
40 18 0.16
ACGTcount: A:0.39, C:0.05, G:0.36, T:0.21
Consensus pattern (38 bp):
GGGAAGCAAAGTGTAGATTGGGAAGCAAGTGTAGAATT
Left flanking sequence: Indices 92138 -- 92637
TGCAAGAGTAACGACTGATGCGCAGGGGTGGGCTATTTGGGTTCTGTTTGGGTATTGATTTTTAG
TGTTGCCTGGTTATATCAATCTAAGTGATACACAGCTCCACTGCGGTTTGCATTCGGAATTGCAA
GTGATGCCGAGGAACAGTTTGATGATGATTCGAATCTAAAGTTAGCCAAGATGAGACGGCTGCGG
TACACGACGCGAAACATAGAGTGAAGAAGAACCTTTTTGAATTAAGCCAATGGATCATGATTAGC
GCGGAGCTTTTCATGCCATACACCACACTGGAAAATGATGGACTGTATTTTGGACGTTCAAGTGC
TTAGGTCGTTCCCACGATGATAACCCCAATGCCTACGTTATTGGGCGTATGTGCCTAAAAAATAA
GGCAGGGGCAAGCCGTTGCATTTGGTTCATTTGAGTGGACTACGCGTTATTGGCCGTGGTCGCTA
GAGACTTCACTTGCAGGCGGGTGCAGCCCTTTGCAGGCGATTGCA
Right flanking sequence: Indices 92812 -- 93311
TCACTGCTAGCTTGTATTGATTCAAGCCTTAGGTGTTTGCCTACGATAGTTGATAGGTCAGTAAT
CTTTTGTCACTAACCAATCCTGACAAGATAGTCAAATGACAGATGATGCGACTAAAGTGAATTGT
ATGAATCATCGCGAATTTTAGCCGAGACATACGGTGTTAAGAATGTCATCCGATGACACAACTAG
CTCGAACGTAAACTAGCATGTGATCAGTCAATAGTACCAACCACTCAAACGACCCTTCACTTTCA
CCTCCTCGTCTAAGTCAATCAGCTTTTCTTTTCTTTAGCTATTCTGATTCAGCATCAGTTACCGA
ATGCCTGTTGACATTCATGCCTCTTCTACCAACCTTGCTTATTGCATTCATGCCTCCCACCACCC
TTGCTTGTTAACATTCATGCTTCTCCCACCACCCTCCAACTATCCTCTTACCACCCCACACCACC
CTCCACTTACGCCACAAGTTCCCCCTTCAACACCAGCACTCTCCA
Found at i:93233 original size:34 final size:32
Alignment explanation
Indices: 93142--93236 Score: 102
Period size: 31 Copynumber: 2.9 Consensus size: 32
93132 ACCGAATGCC
* * *
93142 TGTTGACATTCATGCCTCTTCTACCAACCTTGCT
1 TGTT-ACATTCATG-CTCTCCCACCACCCTTGCT
* *
93176 TATTGCATTCATGC-CTCCCACCACCCTTGCT
1 TGTTACATTCATGCTCTCCCACCACCCTTGCT
93207 TGTTAACATTCATGCTTCTCCCACCACCCT
1 TGTT-ACATTCATGC-TCTCCCACCACCCT
93237 CCAACTATCC
Statistics
Matches: 51, Mismatches: 7, Indels: 6
0.80 0.11 0.09
Matches are distributed among these distances:
31 17 0.33
32 10 0.20
33 8 0.16
34 16 0.31
ACGTcount: A:0.18, C:0.38, G:0.09, T:0.35
Consensus pattern (32 bp):
TGTTACATTCATGCTCTCCCACCACCCTTGCT
Left flanking sequence: Indices 92642 -- 93141
ATCAAAGTGTAGAATTGGAAGCAAGTGAAGAATGGAAGCAAAGTGTAGAATGGGAAGCAAGTGTA
AAATTGGGAAACAAGGTGTAGTATTGGGAGGCAGAGTGTAGGATTGGGAAGCAAGTGTAAAATTG
GGAATGAAAGTGTAGAATTGGAAGCAAAGTGTAGGATTGGTCACTGCTAGCTTGTATTGATTCAA
GCCTTAGGTGTTTGCCTACGATAGTTGATAGGTCAGTAATCTTTTGTCACTAACCAATCCTGACA
AGATAGTCAAATGACAGATGATGCGACTAAAGTGAATTGTATGAATCATCGCGAATTTTAGCCGA
GACATACGGTGTTAAGAATGTCATCCGATGACACAACTAGCTCGAACGTAAACTAGCATGTGATC
AGTCAATAGTACCAACCACTCAAACGACCCTTCACTTTCACCTCCTCGTCTAAGTCAATCAGCTT
TTCTTTTCTTTAGCTATTCTGATTCAGCATCAGTTACCGAATGCC
Right flanking sequence: Indices 93237 -- 93736
CCAACTATCCTCTTACCACCCCACACCACCCTCCACTTACGCCACAAGTTCCCCCTTCAACACCA
GCACTCTCCAAAGAAACCCCCAATAGACCCCTACCCCTTCCACTTTTCCCTCCTCTTCCTCTACC
TCTCCCCCACCTCTTTCCTCTCCTCCCCCACCTCTTTTCCCTCTCCGGTTGCGAGCCCGCCGCGC
CCCTACACAACACCGCCCTGCACCACCCCGACCCCATGTTCACCGCGGCGACCCTCGCCCTGTTG
ACGGCGTGTCTCGACCGCATCTACTCCAAGAACAACCTCCTTGTGCTTGACCGGGAGCTTTCGCC
GCTCATCAACCAATTGACCCCCTTCCTGGCCCTCAAGACCCACGGCAAGTTCGACAAACTCGTGT
GGCTCGACGAGGTGGCCGCCAGCGGCACCCCGCTCGACCAGTTTGCCCTGCTCATCGTGGTGTGT
GCGGCGACCCCGGCCAACGCCGCCGCCGTGGGGCGGCTCCACCGC
Found at i:93379 original size:23 final size:20
Alignment explanation
Indices: 93353--93402 Score: 64
Period size: 21 Copynumber: 2.3 Consensus size: 20
93343 ACTTTTCCCT
93353 CCTCTTCCTCTACCTCTCCCCCA
1 CCTCTTCCTCT--C-CTCCCCCA
93376 CCTCTTTCCTCTCCTCCCCCA
1 CCTC-TTCCTCTCCTCCCCCA
93397 CCTCTT
1 CCTCTT
93403 TTCCCTCTCC
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
20 2 0.08
21 12 0.46
22 1 0.04
23 4 0.15
24 7 0.27
ACGTcount: A:0.06, C:0.60, G:0.00, T:0.34
Consensus pattern (20 bp):
CCTCTTCCTCTCCTCCCCCA
Left flanking sequence: Indices 92853 -- 93352
TACGATAGTTGATAGGTCAGTAATCTTTTGTCACTAACCAATCCTGACAAGATAGTCAAATGACA
GATGATGCGACTAAAGTGAATTGTATGAATCATCGCGAATTTTAGCCGAGACATACGGTGTTAAG
AATGTCATCCGATGACACAACTAGCTCGAACGTAAACTAGCATGTGATCAGTCAATAGTACCAAC
CACTCAAACGACCCTTCACTTTCACCTCCTCGTCTAAGTCAATCAGCTTTTCTTTTCTTTAGCTA
TTCTGATTCAGCATCAGTTACCGAATGCCTGTTGACATTCATGCCTCTTCTACCAACCTTGCTTA
TTGCATTCATGCCTCCCACCACCCTTGCTTGTTAACATTCATGCTTCTCCCACCACCCTCCAACT
ATCCTCTTACCACCCCACACCACCCTCCACTTACGCCACAAGTTCCCCCTTCAACACCAGCACTC
TCCAAAGAAACCCCCAATAGACCCCTACCCCTTCCACTTTTCCCT
Right flanking sequence: Indices 93403 -- 93902
TTCCCTCTCCGGTTGCGAGCCCGCCGCGCCCCTACACAACACCGCCCTGCACCACCCCGACCCCA
TGTTCACCGCGGCGACCCTCGCCCTGTTGACGGCGTGTCTCGACCGCATCTACTCCAAGAACAAC
CTCCTTGTGCTTGACCGGGAGCTTTCGCCGCTCATCAACCAATTGACCCCCTTCCTGGCCCTCAA
GACCCACGGCAAGTTCGACAAACTCGTGTGGCTCGACGAGGTGGCCGCCAGCGGCACCCCGCTCG
ACCAGTTTGCCCTGCTCATCGTGGTGTGTGCGGCGACCCCGGCCAACGCCGCCGCCGTGGGGCGG
CTCCACCGCCACCGGTTGCACGTGGTGGTGGCGAACTTGGCGCCGGCGTTTGTGTGGCAGGTGAA
CCAGGCGGTGCACGGAGGAGTGCGGGAGGAGGACATTATTTTGGGGTTGGAGGGAGGCGGAGGTG
TGGGCGGTGTGAACGGGAGTGGTGTGAGCGGGAGTGGTGTGAGCG
Found at i:93392 original size:21 final size:23
Alignment explanation
Indices: 93368--93412 Score: 76
Period size: 21 Copynumber: 2.0 Consensus size: 23
93358 TCCTCTACCT
93368 CTCCCCCACCTC-TTT-CCTCTC
1 CTCCCCCACCTCTTTTCCCTCTC
93389 CTCCCCCACCTCTTTTCCCTCTC
1 CTCCCCCACCTCTTTTCCCTCTC
93412 C
1 C
93413 GGTTGCGAGC
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
21 12 0.55
22 3 0.14
23 7 0.32
ACGTcount: A:0.04, C:0.62, G:0.00, T:0.33
Consensus pattern (23 bp):
CTCCCCCACCTCTTTTCCCTCTC
Left flanking sequence: Indices 92868 -- 93367
GTCAGTAATCTTTTGTCACTAACCAATCCTGACAAGATAGTCAAATGACAGATGATGCGACTAAA
GTGAATTGTATGAATCATCGCGAATTTTAGCCGAGACATACGGTGTTAAGAATGTCATCCGATGA
CACAACTAGCTCGAACGTAAACTAGCATGTGATCAGTCAATAGTACCAACCACTCAAACGACCCT
TCACTTTCACCTCCTCGTCTAAGTCAATCAGCTTTTCTTTTCTTTAGCTATTCTGATTCAGCATC
AGTTACCGAATGCCTGTTGACATTCATGCCTCTTCTACCAACCTTGCTTATTGCATTCATGCCTC
CCACCACCCTTGCTTGTTAACATTCATGCTTCTCCCACCACCCTCCAACTATCCTCTTACCACCC
CACACCACCCTCCACTTACGCCACAAGTTCCCCCTTCAACACCAGCACTCTCCAAAGAAACCCCC
AATAGACCCCTACCCCTTCCACTTTTCCCTCCTCTTCCTCTACCT
Right flanking sequence: Indices 93413 -- 93912
GGTTGCGAGCCCGCCGCGCCCCTACACAACACCGCCCTGCACCACCCCGACCCCATGTTCACCGC
GGCGACCCTCGCCCTGTTGACGGCGTGTCTCGACCGCATCTACTCCAAGAACAACCTCCTTGTGC
TTGACCGGGAGCTTTCGCCGCTCATCAACCAATTGACCCCCTTCCTGGCCCTCAAGACCCACGGC
AAGTTCGACAAACTCGTGTGGCTCGACGAGGTGGCCGCCAGCGGCACCCCGCTCGACCAGTTTGC
CCTGCTCATCGTGGTGTGTGCGGCGACCCCGGCCAACGCCGCCGCCGTGGGGCGGCTCCACCGCC
ACCGGTTGCACGTGGTGGTGGCGAACTTGGCGCCGGCGTTTGTGTGGCAGGTGAACCAGGCGGTG
CACGGAGGAGTGCGGGAGGAGGACATTATTTTGGGGTTGGAGGGAGGCGGAGGTGTGGGCGGTGT
GAACGGGAGTGGTGTGAGCGGGAGTGGTGTGAGCGGTGGCACCAG
Found at i:93900 original size:15 final size:15
Alignment explanation
Indices: 93863--93903 Score: 73
Period size: 15 Copynumber: 2.7 Consensus size: 15
93853 AGGTGTGGGC
*
93863 GGTGTGAACGGGAGT
1 GGTGTGAGCGGGAGT
93878 GGTGTGAGCGGGAGT
1 GGTGTGAGCGGGAGT
93893 GGTGTGAGCGG
1 GGTGTGAGCGG
93904 TGGCACCAGC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
15 25 1.00
ACGTcount: A:0.15, C:0.07, G:0.59, T:0.20
Consensus pattern (15 bp):
GGTGTGAGCGGGAGT
Left flanking sequence: Indices 93363 -- 93862
TACCTCTCCCCCACCTCTTTCCTCTCCTCCCCCACCTCTTTTCCCTCTCCGGTTGCGAGCCCGCC
GCGCCCCTACACAACACCGCCCTGCACCACCCCGACCCCATGTTCACCGCGGCGACCCTCGCCCT
GTTGACGGCGTGTCTCGACCGCATCTACTCCAAGAACAACCTCCTTGTGCTTGACCGGGAGCTTT
CGCCGCTCATCAACCAATTGACCCCCTTCCTGGCCCTCAAGACCCACGGCAAGTTCGACAAACTC
GTGTGGCTCGACGAGGTGGCCGCCAGCGGCACCCCGCTCGACCAGTTTGCCCTGCTCATCGTGGT
GTGTGCGGCGACCCCGGCCAACGCCGCCGCCGTGGGGCGGCTCCACCGCCACCGGTTGCACGTGG
TGGTGGCGAACTTGGCGCCGGCGTTTGTGTGGCAGGTGAACCAGGCGGTGCACGGAGGAGTGCGG
GAGGAGGACATTATTTTGGGGTTGGAGGGAGGCGGAGGTGTGGGC
Right flanking sequence: Indices 93904 -- 94403
TGGCACCAGCACCAGCACCAACCAGATCGGACACCACAATAACACCAAAATCAACCCAAACAACC
CAAACCACGCAACAAGCAACACAAAAAACACAGCCACCACTGGCACCACTGGCACCACCACTGGC
AATACCCCCACCCCCACCCCCGCGTTCATCGCGGTCTCGGCCAAGTGCCGGCTCTGGCAGTGGCG
GGTGTACCCGTGGCAGCCGCAGCACGACGTGTACACCGTGGTGGGCGGCTCGGTGGGCGACTACG
TGCACAACCCGCTCGTGCAGCTCGAGCAGGTGGCGGCGGCGGTGGTGGACGTGGTGTTCCCCCCG
TCGCTGGCGCTCCCGGAGCTCAAGATCAACCACCGCTTCGCCAAGGGCACCCACGCGGCAGCACT
CGTGCGGATGGTGGACGAGGTGCACCTCCCGCAGGCACTTGCACGGCGGCTCGCGCCCGCAGCCA
CCGAGTTCTACACCCACCACCAGGTAGCCGACACCGACTTGGTGG
Found at i:94530 original size:9 final size:9
Alignment explanation
Indices: 94518--94563 Score: 65
Period size: 9 Copynumber: 5.1 Consensus size: 9
94508 GGTGGACAAC
94518 CAGGACAGG
1 CAGGACAGG
*
94527 CAGGACAGA
1 CAGGACAGG
*
94536 CAGGACAGA
1 CAGGACAGG
*
94545 CAGGGCAGG
1 CAGGACAGG
94554 CAGGACAGG
1 CAGGACAGG
94563 C
1 C
94564 TTCGCACGGG
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
9 33 1.00
ACGTcount: A:0.35, C:0.24, G:0.41, T:0.00
Consensus pattern (9 bp):
CAGGACAGG
Left flanking sequence: Indices 94018 -- 94517
TGGCACCACCACTGGCAATACCCCCACCCCCACCCCCGCGTTCATCGCGGTCTCGGCCAAGTGCC
GGCTCTGGCAGTGGCGGGTGTACCCGTGGCAGCCGCAGCACGACGTGTACACCGTGGTGGGCGGC
TCGGTGGGCGACTACGTGCACAACCCGCTCGTGCAGCTCGAGCAGGTGGCGGCGGCGGTGGTGGA
CGTGGTGTTCCCCCCGTCGCTGGCGCTCCCGGAGCTCAAGATCAACCACCGCTTCGCCAAGGGCA
CCCACGCGGCAGCACTCGTGCGGATGGTGGACGAGGTGCACCTCCCGCAGGCACTTGCACGGCGG
CTCGCGCCCGCAGCCACCGAGTTCTACACCCACCACCAGGTAGCCGACACCGACTTGGTGGTGCT
TGACCGGGCACTCGACTGGGTGCCGGCGGTGATGGACCAGGTGACGTACGAGGGGCTTATTGATG
ATCTGTTTGGGCTCAGCTACGGGGTGGTGGGCAAGGGTGGACAAC
Right flanking sequence: Indices 94564 -- 95063
TTCGCACGGGTCACACACGCACTCTGCACACTCCGCACACTCCCAGCACCCTCTGGCTGGTGGTG
CTGGTGGTGCCTCTGGTGGTGCCTCCTCTGGCTCCTCCGCCTCTGCCTCCGCCCTCCCCCCGCTG
ACGGTGGCGCTCCCCGCCGAGGCCCAGCTCCCCCCCGACGACCCCCTCCTCCGCCACTTGCGCCA
CCTCAACTTCTCGCTGGTGGGGCCCCGGCTCAACCGGGTGGCGCGGGCGCTCCAGGAGCACCAGG
CGGCGATGCGCCCCGACGAGTGGGACGTGGCCCAGCTCCGCGGGGTGGTGGCGCTGGTGGGCACC
TGGGCGCAGCAGCAGCAGCTGGTCAAGCGCCACACCGCGGTGCTGGAGCAGATCTTGGCGGCGAT
GGACCGCGAGTGGTTGGCGTTCGAGACCGAGGTGTTTGACGACGAGTACCCGGCGCAGGCGGCGC
GGGTGCGCCAGATGTTGGCACGGCAGGCCCGGTGGGACCGGGCGG
Found at i:94644 original size:12 final size:12
Alignment explanation
Indices: 94629--94653 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
94619 GCTGGTGGTG
94629 CTGGTGGTGCCT
1 CTGGTGGTGCCT
94641 CTGGTGGTGCCT
1 CTGGTGGTGCCT
94653 C
1 C
94654 CTCTGGCTCC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.00, C:0.28, G:0.40, T:0.32
Consensus pattern (12 bp):
CTGGTGGTGCCT
Left flanking sequence: Indices 94129 -- 94628
GTACACCGTGGTGGGCGGCTCGGTGGGCGACTACGTGCACAACCCGCTCGTGCAGCTCGAGCAGG
TGGCGGCGGCGGTGGTGGACGTGGTGTTCCCCCCGTCGCTGGCGCTCCCGGAGCTCAAGATCAAC
CACCGCTTCGCCAAGGGCACCCACGCGGCAGCACTCGTGCGGATGGTGGACGAGGTGCACCTCCC
GCAGGCACTTGCACGGCGGCTCGCGCCCGCAGCCACCGAGTTCTACACCCACCACCAGGTAGCCG
ACACCGACTTGGTGGTGCTTGACCGGGCACTCGACTGGGTGCCGGCGGTGATGGACCAGGTGACG
TACGAGGGGCTTATTGATGATCTGTTTGGGCTCAGCTACGGGGTGGTGGGCAAGGGTGGACAACC
AGGACAGGCAGGACAGACAGGACAGACAGGGCAGGCAGGACAGGCTTCGCACGGGTCACACACGC
ACTCTGCACACTCCGCACACTCCCAGCACCCTCTGGCTGGTGGTG
Right flanking sequence: Indices 94654 -- 95153
CTCTGGCTCCTCCGCCTCTGCCTCCGCCCTCCCCCCGCTGACGGTGGCGCTCCCCGCCGAGGCCC
AGCTCCCCCCCGACGACCCCCTCCTCCGCCACTTGCGCCACCTCAACTTCTCGCTGGTGGGGCCC
CGGCTCAACCGGGTGGCGCGGGCGCTCCAGGAGCACCAGGCGGCGATGCGCCCCGACGAGTGGGA
CGTGGCCCAGCTCCGCGGGGTGGTGGCGCTGGTGGGCACCTGGGCGCAGCAGCAGCAGCTGGTCA
AGCGCCACACCGCGGTGCTGGAGCAGATCTTGGCGGCGATGGACCGCGAGTGGTTGGCGTTCGAG
ACCGAGGTGTTTGACGACGAGTACCCGGCGCAGGCGGCGCGGGTGCGCCAGATGTTGGCACGGCA
GGCCCGGTGGGACCGGGCGGTGGCGGCGGTGGTGTTGGTGCTGGTGGTGAACGACGGGGTGCGCC
GGCGCGACTGGGAGCAGTGGCGGGGCGACGTCGCCGACAACTGGG
Found at i:95432 original size:12 final size:12
Alignment explanation
Indices: 95415--95445 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
95405 GGTGGGGCTG
95415 GTGGGGCAGGCA
1 GTGGGGCAGGCA
95427 GTGGGGCAGGCA
1 GTGGGGCAGGCA
95439 GTGGGGC
1 GTGGGGC
95446 TGGAGCGAGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.13, C:0.16, G:0.61, T:0.10
Consensus pattern (12 bp):
GTGGGGCAGGCA
Left flanking sequence: Indices 94915 -- 95414
GCGCCACACCGCGGTGCTGGAGCAGATCTTGGCGGCGATGGACCGCGAGTGGTTGGCGTTCGAGA
CCGAGGTGTTTGACGACGAGTACCCGGCGCAGGCGGCGCGGGTGCGCCAGATGTTGGCACGGCAG
GCCCGGTGGGACCGGGCGGTGGCGGCGGTGGTGTTGGTGCTGGTGGTGAACGACGGGGTGCGCCG
GCGCGACTGGGAGCAGTGGCGGGGCGACGTCGCCGACAACTGGGGCGCCGGCGCCTGGGGCGTGG
TGGAGGCGTTGCGCCGGCACGGGGTGGTGGCGGTGGCGGACGAGGGCGACTTTTTGACCACGTTC
ACCCGGGGGAAGGACAAGCCGCCCGAGGACGTGGACCGGTCCAGCGCCAACTTGGGGATCACCGG
GGCCGAGCCGGTGGCGGTGCGCAACTACCGGTTGGTGGAGAAGTTCTGGAACTTGCACCCGGAGG
AGGAGGAGGGTGGGGACAGTGGGGGGACTGGGGCTGGTGGGGCTG
Right flanking sequence: Indices 95446 -- 95945
TGGAGCGAGTGGAGGAGGGAACGGAGGAGGAAGAAGTGGGGGGAACGGAGGAGGAAGTGGAGGGA
ACGGAGGAGGCAGTGGAGGAAATGGAGGCAGTGGAGGAGGTAACGGCAGTGGTAGTGGTGATGGT
AGTGGTGATGGGAATGCCACTGCTCCCACCCCCACCGCCACCACCTTCACCTCCGTCGCCGACGT
CTACTCTCAACCCCTGTTCACCCTCCCCTCCAACACCGTGCCCGTGCTCGTCCGCCTCGTGGAGC
TGCTCTACCTGCGGCGGTTCCTCCGCTACAAGCCGGTGACCAACGTGCGCCGGCGGCCCAACTGG
GAGGGCCTCGGGGTGGCGCTGTTCTGGAAGGGCCCCGTGGTCGACACCGGGTTGGCGCTCAGCAG
CGGGGCCGGCGACGGGCACCCCGTGGAGCTGCCGGTGACGGTGGTGGTGGTGATGGGCGGGGTGA
CGCGGGCCGAGTTGGCGTGCTTCGAGTGGTTGCGCCAGCGGTTGG
Found at i:95489 original size:24 final size:22
Alignment explanation
Indices: 95459--95538 Score: 92
Period size: 21 Copynumber: 3.6 Consensus size: 22
95449 AGCGAGTGGA
95459 GGAGGGAACGGAGGAGGAAGAAGT
1 GGAGGGAACGGAGGAGG--GAAGT
*
95483 GGGGGGAACGGAGGA-GGAAGT
1 GGAGGGAACGGAGGAGGGAAGT
*
95504 GGAGGGAACGGAGGA-GGCAGT
1 GGAGGGAACGGAGGAGGGAAGT
* *
95525 GGAGGAAATGGAGG
1 GGAGGGAACGGAGG
95539 CAGTGGAGGA
Statistics
Matches: 51, Mismatches: 5, Indels: 3
0.86 0.08 0.05
Matches are distributed among these distances:
21 36 0.71
23 1 0.02
24 14 0.27
ACGTcount: A:0.33, C:0.05, G:0.57, T:0.05
Consensus pattern (22 bp):
GGAGGGAACGGAGGAGGGAAGT
Left flanking sequence: Indices 94959 -- 95458
GCGAGTGGTTGGCGTTCGAGACCGAGGTGTTTGACGACGAGTACCCGGCGCAGGCGGCGCGGGTG
CGCCAGATGTTGGCACGGCAGGCCCGGTGGGACCGGGCGGTGGCGGCGGTGGTGTTGGTGCTGGT
GGTGAACGACGGGGTGCGCCGGCGCGACTGGGAGCAGTGGCGGGGCGACGTCGCCGACAACTGGG
GCGCCGGCGCCTGGGGCGTGGTGGAGGCGTTGCGCCGGCACGGGGTGGTGGCGGTGGCGGACGAG
GGCGACTTTTTGACCACGTTCACCCGGGGGAAGGACAAGCCGCCCGAGGACGTGGACCGGTCCAG
CGCCAACTTGGGGATCACCGGGGCCGAGCCGGTGGCGGTGCGCAACTACCGGTTGGTGGAGAAGT
TCTGGAACTTGCACCCGGAGGAGGAGGAGGGTGGGGACAGTGGGGGGACTGGGGCTGGTGGGGCT
GGTGGGGCAGGCAGTGGGGCAGGCAGTGGGGCTGGAGCGAGTGGA
Right flanking sequence: Indices 95539 -- 96038
CAGTGGAGGAGGTAACGGCAGTGGTAGTGGTGATGGTAGTGGTGATGGGAATGCCACTGCTCCCA
CCCCCACCGCCACCACCTTCACCTCCGTCGCCGACGTCTACTCTCAACCCCTGTTCACCCTCCCC
TCCAACACCGTGCCCGTGCTCGTCCGCCTCGTGGAGCTGCTCTACCTGCGGCGGTTCCTCCGCTA
CAAGCCGGTGACCAACGTGCGCCGGCGGCCCAACTGGGAGGGCCTCGGGGTGGCGCTGTTCTGGA
AGGGCCCCGTGGTCGACACCGGGTTGGCGCTCAGCAGCGGGGCCGGCGACGGGCACCCCGTGGAG
CTGCCGGTGACGGTGGTGGTGGTGATGGGCGGGGTGACGCGGGCCGAGTTGGCGTGCTTCGAGTG
GTTGCGCCAGCGGTTGGGCCGGCGGATCGTGGTGGTGGCGCCGGAGATCGTCAACCGCGAGCGGG
TGTTCCGGGCGATGGCGGAGGTGTAGGAGAATGGAGAAGGAATGG
Found at i:95518 original size:18 final size:18
Alignment explanation
Indices: 95495--95548 Score: 54
Period size: 18 Copynumber: 2.8 Consensus size: 18
95485 GGGGAACGGA
*
95495 GGAGGAAGTGGAGGGAAC
1 GGAGGAAGTGGAGGAAAC
*
95513 GGAGGAGGCAGTGGAGGAAAT
1 GGAGGA---AGTGGAGGAAAC
*
95534 GGAGGCAGTGGAGGA
1 GGAGGAAGTGGAGGA
95549 GGTAACGGCA
Statistics
Matches: 30, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
18 15 0.50
21 15 0.50
ACGTcount: A:0.31, C:0.06, G:0.56, T:0.07
Consensus pattern (18 bp):
GGAGGAAGTGGAGGAAAC
Left flanking sequence: Indices 94995 -- 95494
ACGAGTACCCGGCGCAGGCGGCGCGGGTGCGCCAGATGTTGGCACGGCAGGCCCGGTGGGACCGG
GCGGTGGCGGCGGTGGTGTTGGTGCTGGTGGTGAACGACGGGGTGCGCCGGCGCGACTGGGAGCA
GTGGCGGGGCGACGTCGCCGACAACTGGGGCGCCGGCGCCTGGGGCGTGGTGGAGGCGTTGCGCC
GGCACGGGGTGGTGGCGGTGGCGGACGAGGGCGACTTTTTGACCACGTTCACCCGGGGGAAGGAC
AAGCCGCCCGAGGACGTGGACCGGTCCAGCGCCAACTTGGGGATCACCGGGGCCGAGCCGGTGGC
GGTGCGCAACTACCGGTTGGTGGAGAAGTTCTGGAACTTGCACCCGGAGGAGGAGGAGGGTGGGG
ACAGTGGGGGGACTGGGGCTGGTGGGGCTGGTGGGGCAGGCAGTGGGGCAGGCAGTGGGGCTGGA
GCGAGTGGAGGAGGGAACGGAGGAGGAAGAAGTGGGGGGAACGGA
Right flanking sequence: Indices 95549 -- 96048
GGTAACGGCAGTGGTAGTGGTGATGGTAGTGGTGATGGGAATGCCACTGCTCCCACCCCCACCGC
CACCACCTTCACCTCCGTCGCCGACGTCTACTCTCAACCCCTGTTCACCCTCCCCTCCAACACCG
TGCCCGTGCTCGTCCGCCTCGTGGAGCTGCTCTACCTGCGGCGGTTCCTCCGCTACAAGCCGGTG
ACCAACGTGCGCCGGCGGCCCAACTGGGAGGGCCTCGGGGTGGCGCTGTTCTGGAAGGGCCCCGT
GGTCGACACCGGGTTGGCGCTCAGCAGCGGGGCCGGCGACGGGCACCCCGTGGAGCTGCCGGTGA
CGGTGGTGGTGGTGATGGGCGGGGTGACGCGGGCCGAGTTGGCGTGCTTCGAGTGGTTGCGCCAG
CGGTTGGGCCGGCGGATCGTGGTGGTGGCGCCGGAGATCGTCAACCGCGAGCGGGTGTTCCGGGC
GATGGCGGAGGTGTAGGAGAATGGAGAAGGAATGGTTAGAAGGGC
Found at i:95575 original size:12 final size:12
Alignment explanation
Indices: 95560--95586 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
95550 GTAACGGCAG
95560 TGGTAGTGGTGA
1 TGGTAGTGGTGA
95572 TGGTAGTGGTGA
1 TGGTAGTGGTGA
95584 TGG
1 TGG
95587 GAATGCCACT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.15, C:0.00, G:0.52, T:0.33
Consensus pattern (12 bp):
TGGTAGTGGTGA
Left flanking sequence: Indices 95060 -- 95559
GCGGTGGCGGCGGTGGTGTTGGTGCTGGTGGTGAACGACGGGGTGCGCCGGCGCGACTGGGAGCA
GTGGCGGGGCGACGTCGCCGACAACTGGGGCGCCGGCGCCTGGGGCGTGGTGGAGGCGTTGCGCC
GGCACGGGGTGGTGGCGGTGGCGGACGAGGGCGACTTTTTGACCACGTTCACCCGGGGGAAGGAC
AAGCCGCCCGAGGACGTGGACCGGTCCAGCGCCAACTTGGGGATCACCGGGGCCGAGCCGGTGGC
GGTGCGCAACTACCGGTTGGTGGAGAAGTTCTGGAACTTGCACCCGGAGGAGGAGGAGGGTGGGG
ACAGTGGGGGGACTGGGGCTGGTGGGGCTGGTGGGGCAGGCAGTGGGGCAGGCAGTGGGGCTGGA
GCGAGTGGAGGAGGGAACGGAGGAGGAAGAAGTGGGGGGAACGGAGGAGGAAGTGGAGGGAACGG
AGGAGGCAGTGGAGGAAATGGAGGCAGTGGAGGAGGTAACGGCAG
Right flanking sequence: Indices 95587 -- 96086
GAATGCCACTGCTCCCACCCCCACCGCCACCACCTTCACCTCCGTCGCCGACGTCTACTCTCAAC
CCCTGTTCACCCTCCCCTCCAACACCGTGCCCGTGCTCGTCCGCCTCGTGGAGCTGCTCTACCTG
CGGCGGTTCCTCCGCTACAAGCCGGTGACCAACGTGCGCCGGCGGCCCAACTGGGAGGGCCTCGG
GGTGGCGCTGTTCTGGAAGGGCCCCGTGGTCGACACCGGGTTGGCGCTCAGCAGCGGGGCCGGCG
ACGGGCACCCCGTGGAGCTGCCGGTGACGGTGGTGGTGGTGATGGGCGGGGTGACGCGGGCCGAG
TTGGCGTGCTTCGAGTGGTTGCGCCAGCGGTTGGGCCGGCGGATCGTGGTGGTGGCGCCGGAGAT
CGTCAACCGCGAGCGGGTGTTCCGGGCGATGGCGGAGGTGTAGGAGAATGGAGAAGGAATGGTTA
GAAGGGCTTGAAGGTTGTGGGTGTCGTCAATGAGTTCAATGGCTT
Found at i:96373 original size:15 final size:16
Alignment explanation
Indices: 96345--96377 Score: 59
Period size: 15 Copynumber: 2.1 Consensus size: 16
96335 CTGAGTATTC
96345 TTCTCAAGCCCGAGTA
1 TTCTCAAGCCCGAGTA
96361 TTCTCAA-CCCGAGTA
1 TTCTCAAGCCCGAGTA
96376 TT
1 TT
96378 TTCGAGTATT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 10 0.59
16 7 0.41
ACGTcount: A:0.24, C:0.30, G:0.15, T:0.30
Consensus pattern (16 bp):
TTCTCAAGCCCGAGTA
Left flanking sequence: Indices 95845 -- 96344
CGACGGGCACCCCGTGGAGCTGCCGGTGACGGTGGTGGTGGTGATGGGCGGGGTGACGCGGGCCG
AGTTGGCGTGCTTCGAGTGGTTGCGCCAGCGGTTGGGCCGGCGGATCGTGGTGGTGGCGCCGGAG
ATCGTCAACCGCGAGCGGGTGTTCCGGGCGATGGCGGAGGTGTAGGAGAATGGAGAAGGAATGGT
TAGAAGGGCTTGAAGGTTGTGGGTGTCGTCAATGAGTTCAATGGCTTTAATGGATTCAATGCCTC
ATTACCTTCACTGTCTTCAATGTCCTCAATCTTCAGTCTTCAGTCTTCAGCCTTCAATGTCCATG
TCTTCATGCCTTCAGTTGTCGTTACCTCCTTAGCCCTGTCATTTTTATACATAGTCTCCTAGTTA
TAGCACTAATAGAGGATAAACAAGCTACAATGGTGTTGGGATTGGACTGGTGGGTTCCTCGTATA
CTCTTGCTACCATGTGTCACAGTAACTGTCTAGCACTGAGTATTC
Right flanking sequence: Indices 96378 -- 96877
TTCGAGTATTTTCTCAAGCCTGTAGTCTCAAAATACAGCAGTCTTTCGCTTATGATGGCTTCTCT
AAAGGACAATTACATGTATAGGTTCCAATTATAGAATCTTCACATGACTACCAACCATTTATGGA
AGAGAAATGAGATTAGCAGTTCCTGTGGTATTTGCTTTAGGTTCTTTTTCTTATTTACCATTGGA
GGTTTAACTGGGGTTATGATTTTGAAGCTTCTATTGATGATGCTTTCCACGATACTAATTATGTA
GTAGGTCACTTCCACTAATATTTACGCGAGCCCTATTCTCATCAATTGGTGCTTACTACTAGGTC
CTTCTATGTTCGGTTGACACTGTATCCGTATTTAAGGAGAAATCCACTGCTGTTTATCATTTATC
TCAGTATAATCTTCTTACCAATGCAGTTGTTAGGATTAACTGGTAGCCTCGTAAAATCCCAAAAT
ACTCTGATGCTTCTGTAGATTGAAACTTAGTCGCTACTTAAGGTT
Found at i:97541 original size:17 final size:17
Alignment explanation
Indices: 97519--97570 Score: 63
Period size: 17 Copynumber: 3.2 Consensus size: 17
97509 CCTTGATAGT
97519 GTTTTCAACGTATATCC
1 GTTTTCAACGTATATCC
97536 GTTTTCAAC--ATATCC
1 GTTTTCAACGTATATCC
* * *
97551 GTTCTCAATGTGTATCC
1 GTTTTCAACGTATATCC
97568 GTT
1 GTT
97571 ACACACTGAG
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
15 13 0.43
17 17 0.57
ACGTcount: A:0.21, C:0.23, G:0.13, T:0.42
Consensus pattern (17 bp):
GTTTTCAACGTATATCC
Left flanking sequence: Indices 97019 -- 97518
ACCGGCCAGCGTTCCCACCTACCAGTACCAGTGTTCCCCACCCCCTCTTACCAGCGTTCTCCACC
CTCTTTTCTTTACTCTACCCCAGCCAATGGCCGTCGCCCCAAAGCCAACCACCTGATCCGATCAG
CCCATGGCATCATAACCACGGTAATTGGCCAGCGTCGAATGTAACGTGGCCACGCGCAGGAGGCC
CCTGGCGCCAGTACACTCTAACCACCGCCTAAAAACGACCGTCTCTACCCCCAGCCACCTTCTTT
TCTTCCCTACGTCCTTTCCTTCTACTACAACCTCCTCCTCCTTCGACTCTCTGTCCAAAGTTCCC
CCTCTTTTCGGACGCGGTCGCGATCGAGCACCGATAACGTGGGCCTCAGCAACACCAGAGCAGGC
TGTTAAGATAGATCATAACGTTCTCACTCGGTACTGTTTAAACCCTTCACACCCCTCTCAACCAC
TCTCAAACCTCCAATCTTCAATCTCCCTACAATCCCCTTGATAGT
Right flanking sequence: Indices 97571 -- 98070
ACACACTGAGTGCCCCCAGGTGCCCCACCTCCTCCCTCCTCCTACACAAAACCTCATAAACTCTT
TATTAAATATATCCAATGCAATGGGCTAGCCTTAGATCGAGTCCTCGGCCTCCTTCTCCGCCGCC
TGCTTGGCGTAGAAGGCGTTTCTCTTCTCGACAAGCGGGCGGTGCTCGAACTGCCAGTAGCCAGT
GGCCAAGAGGAACCCCGTGCCAAAAGCAATGGTGATGTCGGTGATGATCTTCTTCTTCAAAGTGC
CAGTAATCGGTGCGATAGCCATGGTGGTGTTAGTGCTGAGAAAAGAATTTTCTGGTTTTCTATTT
GACGCCGCACTGGGTGGGACGATAGCCACGCGGGGCTCGCAACCGGGAACCAGGCCCGAAACTTG
GGGCAACCACGCGGCGGAAATGATGGGCGGCAGTGGCGGGCGGTTCAATTGCGCGGTGGCTGCCC
GCGTGCCCGTTCCCGGCTTGTTTCCACCGCCCGGTGGCCCGTTTG
Found at i:97550 original size:15 final size:16
Alignment explanation
Indices: 97519--97558 Score: 55
Period size: 15 Copynumber: 2.5 Consensus size: 16
97509 CCTTGATAGT
97519 GTTTTCAACGTATATCC
1 GTTTTCAACG-ATATCC
97536 GTTTTCAAC-ATATCC
1 GTTTTCAACGATATCC
*
97551 GTTCTCAA
1 GTTTTCAA
97559 TGTGTATCCG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 13 0.59
17 9 0.41
ACGTcount: A:0.25, C:0.25, G:0.10, T:0.40
Consensus pattern (16 bp):
GTTTTCAACGATATCC
Left flanking sequence: Indices 97019 -- 97518
ACCGGCCAGCGTTCCCACCTACCAGTACCAGTGTTCCCCACCCCCTCTTACCAGCGTTCTCCACC
CTCTTTTCTTTACTCTACCCCAGCCAATGGCCGTCGCCCCAAAGCCAACCACCTGATCCGATCAG
CCCATGGCATCATAACCACGGTAATTGGCCAGCGTCGAATGTAACGTGGCCACGCGCAGGAGGCC
CCTGGCGCCAGTACACTCTAACCACCGCCTAAAAACGACCGTCTCTACCCCCAGCCACCTTCTTT
TCTTCCCTACGTCCTTTCCTTCTACTACAACCTCCTCCTCCTTCGACTCTCTGTCCAAAGTTCCC
CCTCTTTTCGGACGCGGTCGCGATCGAGCACCGATAACGTGGGCCTCAGCAACACCAGAGCAGGC
TGTTAAGATAGATCATAACGTTCTCACTCGGTACTGTTTAAACCCTTCACACCCCTCTCAACCAC
TCTCAAACCTCCAATCTTCAATCTCCCTACAATCCCCTTGATAGT
Right flanking sequence: Indices 97559 -- 98058
TGTGTATCCGTTACACACTGAGTGCCCCCAGGTGCCCCACCTCCTCCCTCCTCCTACACAAAACC
TCATAAACTCTTTATTAAATATATCCAATGCAATGGGCTAGCCTTAGATCGAGTCCTCGGCCTCC
TTCTCCGCCGCCTGCTTGGCGTAGAAGGCGTTTCTCTTCTCGACAAGCGGGCGGTGCTCGAACTG
CCAGTAGCCAGTGGCCAAGAGGAACCCCGTGCCAAAAGCAATGGTGATGTCGGTGATGATCTTCT
TCTTCAAAGTGCCAGTAATCGGTGCGATAGCCATGGTGGTGTTAGTGCTGAGAAAAGAATTTTCT
GGTTTTCTATTTGACGCCGCACTGGGTGGGACGATAGCCACGCGGGGCTCGCAACCGGGAACCAG
GCCCGAAACTTGGGGCAACCACGCGGCGGAAATGATGGGCGGCAGTGGCGGGCGGTTCAATTGCG
CGGTGGCTGCCCGCGTGCCCGTTCCCGGCTTGTTTCCACCGCCCG
Found at i:98517 original size:7 final size:7
Alignment explanation
Indices: 98507--98532 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
98497 AAGGAGGAGA
98507 GAAGAAG
1 GAAGAAG
98514 GAAGAAG
1 GAAGAAG
98521 GAAGAAG
1 GAAGAAG
98528 GAAGA
1 GAAGA
98533 CAGAAAGGAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.58, C:0.00, G:0.42, T:0.00
Consensus pattern (7 bp):
GAAGAAG
Left flanking sequence: Indices 98007 -- 98506
AATTGCGCGGTGGCTGCCCGCGTGCCCGTTCCCGGCTTGTTTCCACCGCCCGGTGGCCCGTTTGC
GCCCCCCGGCTTCTCCGCAAACCCCGTGCGGTCGCACCACACATCATACGATGTTGGTGCCCTGC
ACTTAGCACCGCCAATGAGGTGTGCGAACTTTTCAAATTTCGAAACCTCAGTCCACAACCACACA
ATGTTTAAGACCGGTTTGAACGTTGCCTCGAGAAGAGGCTTTTCCTCGTCGGCTGTCAGAGCCAA
CAACATCTACGGTACCCCCAAGCTGGGCCCTTACTCCAACCTTCCCTTCAAGGTCAAGGACAGAA
TGATCCCCTTCCCCGTGGTGTTCTGGGGTGTCGCCGGCTTCTTCTTTGCCTTCCCCTTCTTGTCT
TCGTACTGGCAGATGAAGAAGGCGGGCAACATCTAAGTTAGCATATAGTAATTAAGGTATTTATA
TTGATTTTGTAGAGAAGAGAGGGGAGAGGAGGAGAAAGGAGGAGA
Right flanking sequence: Indices 98533 -- 99032
CAGAAAGGAAAAAGGAGAATGGAAACAGAGGAAACAGCAAGGATTGAGTGAAGAGAAGACGTGGG
TTATCGCTGAGAGTTTAAACGGGGTCACTAGACGTCTTGCTCAATTGGTGAGGTGGGGTAGGTAT
GGTTAAGATCTATGGTGAGAGGATGGAAGAGGATGGTAAGAGGATGGTCAGAGACTATGGCTGAT
GGCCACGAGACCAATAGGAGCCCCTAGAGAAGTACCAATGGGAGTCGTGTCATTTCACCGTCACC
TGAGACGAGTCGGATCTGTCGAGATACGAGGTATGACGTAGGTAAAAGTGGGACTGAATTGAGTG
AGAAAAGTACGAGAAGAGATTTCATAGAGCAGAGATAGAGATCGTAGAGAGAGAGATCGTAGAGA
ATGAGATTGTAGAAATAGAGATTAGAGATAGACAGCGTGGAGATAGAAATGGTGGAGATAAAAAT
AGTAGAGGTAGAAATCGTGGAGATAGAAGTCGTGGAGATAGAAAT
Found at i:98547 original size:26 final size:25
Alignment explanation
Indices: 98511--98561 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 25
98501 AGGAGAGAAG
*
98511 AAGGAAGAAGGAAGAA-GGAAGACAGA
1 AAGGAAAAAGG-AGAATGGAA-ACAGA
98537 AAGGAAAAAGGAGAATGGAAACAGA
1 AAGGAAAAAGGAGAATGGAAACAGA
98562 GGAAACAGCA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
25 9 0.39
26 14 0.61
ACGTcount: A:0.59, C:0.04, G:0.35, T:0.02
Consensus pattern (25 bp):
AAGGAAAAAGGAGAATGGAAACAGA
Left flanking sequence: Indices 98011 -- 98510
GCGCGGTGGCTGCCCGCGTGCCCGTTCCCGGCTTGTTTCCACCGCCCGGTGGCCCGTTTGCGCCC
CCCGGCTTCTCCGCAAACCCCGTGCGGTCGCACCACACATCATACGATGTTGGTGCCCTGCACTT
AGCACCGCCAATGAGGTGTGCGAACTTTTCAAATTTCGAAACCTCAGTCCACAACCACACAATGT
TTAAGACCGGTTTGAACGTTGCCTCGAGAAGAGGCTTTTCCTCGTCGGCTGTCAGAGCCAACAAC
ATCTACGGTACCCCCAAGCTGGGCCCTTACTCCAACCTTCCCTTCAAGGTCAAGGACAGAATGAT
CCCCTTCCCCGTGGTGTTCTGGGGTGTCGCCGGCTTCTTCTTTGCCTTCCCCTTCTTGTCTTCGT
ACTGGCAGATGAAGAAGGCGGGCAACATCTAAGTTAGCATATAGTAATTAAGGTATTTATATTGA
TTTTGTAGAGAAGAGAGGGGAGAGGAGGAGAAAGGAGGAGAGAAG
Right flanking sequence: Indices 98562 -- 99061
GGAAACAGCAAGGATTGAGTGAAGAGAAGACGTGGGTTATCGCTGAGAGTTTAAACGGGGTCACT
AGACGTCTTGCTCAATTGGTGAGGTGGGGTAGGTATGGTTAAGATCTATGGTGAGAGGATGGAAG
AGGATGGTAAGAGGATGGTCAGAGACTATGGCTGATGGCCACGAGACCAATAGGAGCCCCTAGAG
AAGTACCAATGGGAGTCGTGTCATTTCACCGTCACCTGAGACGAGTCGGATCTGTCGAGATACGA
GGTATGACGTAGGTAAAAGTGGGACTGAATTGAGTGAGAAAAGTACGAGAAGAGATTTCATAGAG
CAGAGATAGAGATCGTAGAGAGAGAGATCGTAGAGAATGAGATTGTAGAAATAGAGATTAGAGAT
AGACAGCGTGGAGATAGAAATGGTGGAGATAAAAATAGTAGAGGTAGAAATCGTGGAGATAGAAG
TCGTGGAGATAGAAATCGTGGAGATAGAGGTCATAGAGGGAGAGA
Found at i:98703 original size:11 final size:11
Alignment explanation
Indices: 98674--98715 Score: 59
Period size: 11 Copynumber: 3.9 Consensus size: 11
98664 GTTAAGATCT
*
98674 ATGGTGAGAGG
1 ATGGTAAGAGG
98685 ATGG-AAGAGG
1 ATGGTAAGAGG
98695 ATGGTAAGAGG
1 ATGGTAAGAGG
*
98706 ATGGTCAGAG
1 ATGGTAAGAG
98716 ACTATGGCTG
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
10 9 0.32
11 19 0.68
ACGTcount: A:0.33, C:0.02, G:0.48, T:0.17
Consensus pattern (11 bp):
ATGGTAAGAGG
Left flanking sequence: Indices 98174 -- 98673
TTTCGAAACCTCAGTCCACAACCACACAATGTTTAAGACCGGTTTGAACGTTGCCTCGAGAAGAG
GCTTTTCCTCGTCGGCTGTCAGAGCCAACAACATCTACGGTACCCCCAAGCTGGGCCCTTACTCC
AACCTTCCCTTCAAGGTCAAGGACAGAATGATCCCCTTCCCCGTGGTGTTCTGGGGTGTCGCCGG
CTTCTTCTTTGCCTTCCCCTTCTTGTCTTCGTACTGGCAGATGAAGAAGGCGGGCAACATCTAAG
TTAGCATATAGTAATTAAGGTATTTATATTGATTTTGTAGAGAAGAGAGGGGAGAGGAGGAGAAA
GGAGGAGAGAAGAAGGAAGAAGGAAGAAGGAAGACAGAAAGGAAAAAGGAGAATGGAAACAGAGG
AAACAGCAAGGATTGAGTGAAGAGAAGACGTGGGTTATCGCTGAGAGTTTAAACGGGGTCACTAG
ACGTCTTGCTCAATTGGTGAGGTGGGGTAGGTATGGTTAAGATCT
Right flanking sequence: Indices 98716 -- 99215
ACTATGGCTGATGGCCACGAGACCAATAGGAGCCCCTAGAGAAGTACCAATGGGAGTCGTGTCAT
TTCACCGTCACCTGAGACGAGTCGGATCTGTCGAGATACGAGGTATGACGTAGGTAAAAGTGGGA
CTGAATTGAGTGAGAAAAGTACGAGAAGAGATTTCATAGAGCAGAGATAGAGATCGTAGAGAGAG
AGATCGTAGAGAATGAGATTGTAGAAATAGAGATTAGAGATAGACAGCGTGGAGATAGAAATGGT
GGAGATAAAAATAGTAGAGGTAGAAATCGTGGAGATAGAAGTCGTGGAGATAGAAATCGTGGAGA
TAGAGGTCATAGAGGGAGAGATCGTAGAGATAGAATTCGTGAGTCCAAAGCGGTTGACACAAGTG
AGAGACACCCCTTGGCCGCCCTTGGGTCGCCACGAAGCCGACGACGCGTCGGGTGCATGGCCATA
CACGCGATTTTGACTCAAGCAGTAGAGCCAGACTAGAACGACAAT
Found at i:98922 original size:30 final size:30
Alignment explanation
Indices: 98888--99074 Score: 114
Period size: 30 Copynumber: 6.3 Consensus size: 30
98878 TTCATAGAGC
*
98888 AGAGATAGAGATCGTAGAGAGAGAGATCGT
1 AGAGATAGAGATCGTAGAGAGAGAAATCGT
* * * *
98918 AGAGA-ATGAGATTGTAGAAATAGAGAT--T
1 AGAGATA-GAGATCGTAGAGAGAGAAATCGT
* * * * *
98946 AGAGATAGACAGCGTGGAGATAGAAATGGT
1 AGAGATAGAGATCGTAGAGAGAGAAATCGT
* * * *
98976 GGAGATAAAAATAGTAGAG-GTAGAAATCGT
1 AGAGATAGAGATCGTAGAGAG-AGAAATCGT
* * *
99006 GGAGATAGA-AGTCGTGGAGATAGAAATCGT
1 AGAGATAGAGA-TCGTAGAGAGAGAAATCGT
* * * * *
99036 GGAGATAGAGGTCATAGAGGGAGAGATCGT
1 AGAGATAGAGATCGTAGAGAGAGAAATCGT
99066 AGAGATAGA
1 AGAGATAGA
99075 ATTCGTGAGT
Statistics
Matches: 121, Mismatches: 28, Indels: 16
0.73 0.17 0.10
Matches are distributed among these distances:
28 20 0.17
29 3 0.02
30 98 0.81
ACGTcount: A:0.41, C:0.05, G:0.35, T:0.19
Consensus pattern (30 bp):
AGAGATAGAGATCGTAGAGAGAGAAATCGT
Left flanking sequence: Indices 98388 -- 98887
TTCTTGTCTTCGTACTGGCAGATGAAGAAGGCGGGCAACATCTAAGTTAGCATATAGTAATTAAG
GTATTTATATTGATTTTGTAGAGAAGAGAGGGGAGAGGAGGAGAAAGGAGGAGAGAAGAAGGAAG
AAGGAAGAAGGAAGACAGAAAGGAAAAAGGAGAATGGAAACAGAGGAAACAGCAAGGATTGAGTG
AAGAGAAGACGTGGGTTATCGCTGAGAGTTTAAACGGGGTCACTAGACGTCTTGCTCAATTGGTG
AGGTGGGGTAGGTATGGTTAAGATCTATGGTGAGAGGATGGAAGAGGATGGTAAGAGGATGGTCA
GAGACTATGGCTGATGGCCACGAGACCAATAGGAGCCCCTAGAGAAGTACCAATGGGAGTCGTGT
CATTTCACCGTCACCTGAGACGAGTCGGATCTGTCGAGATACGAGGTATGACGTAGGTAAAAGTG
GGACTGAATTGAGTGAGAAAAGTACGAGAAGAGATTTCATAGAGC
Right flanking sequence: Indices 99075 -- 99574
ATTCGTGAGTCCAAAGCGGTTGACACAAGTGAGAGACACCCCTTGGCCGCCCTTGGGTCGCCACG
AAGCCGACGACGCGTCGGGTGCATGGCCATACACGCGATTTTGACTCAAGCAGTAGAGCCAGACT
AGAACGACAATGGGCTTATTAGCCACGATTCTATGCCTTTGTACTCGTGGCTTTGCCATACACAA
GCAGGCTTGTGAACATTTACCATTGACACGACAACGATTTATTGTGGCCCTCGGACCATGCTAAT
TTGTGGCATGCTAAAATTAGGGCATGCTAGAATTAGGGCATGCTAGAATTATGGCATGCTTGAAT
TAAGGCATGCTAGAATGACATGCTAAGATTGGTGGCACGAAATTGGTGGCACAAAGTTTGAAATA
AAGCCAGGTTTGTGGACTTCGCAAGCCATTGACACACAGAGAGACGATCTAGCAGTAGCGAGGGA
TGGAAGATCTTCGAGGTCTTAGGTACTTAAGACTTTAAGACCTCA
Found at i:98967 original size:15 final size:15
Alignment explanation
Indices: 98947--99044 Score: 92
Period size: 15 Copynumber: 6.5 Consensus size: 15
98937 ATAGAGATTA
*
98947 GAGATAGACAGCGTG
1 GAGATAGAAAGCGTG
98962 GAGATAGAAATG-GTG
1 GAGATAGAAA-GCGTG
* ** *
98977 GAGATAAAAATAGTA
1 GAGATAGAAAGCGTG
* *
98992 GAGGTAGAAATCGTG
1 GAGATAGAAAGCGTG
99007 GAGATAG-AAGTCGTG
1 GAGATAGAAAG-CGTG
*
99022 GAGATAGAAATCGTG
1 GAGATAGAAAGCGTG
99037 GAGATAGA
1 GAGATAGA
99045 GGTCATAGAG
Statistics
Matches: 68, Mismatches: 11, Indels: 8
0.78 0.13 0.09
Matches are distributed among these distances:
14 2 0.03
15 63 0.93
16 3 0.04
ACGTcount: A:0.41, C:0.05, G:0.36, T:0.18
Consensus pattern (15 bp):
GAGATAGAAAGCGTG
Left flanking sequence: Indices 98447 -- 98946
ATTAAGGTATTTATATTGATTTTGTAGAGAAGAGAGGGGAGAGGAGGAGAAAGGAGGAGAGAAGA
AGGAAGAAGGAAGAAGGAAGACAGAAAGGAAAAAGGAGAATGGAAACAGAGGAAACAGCAAGGAT
TGAGTGAAGAGAAGACGTGGGTTATCGCTGAGAGTTTAAACGGGGTCACTAGACGTCTTGCTCAA
TTGGTGAGGTGGGGTAGGTATGGTTAAGATCTATGGTGAGAGGATGGAAGAGGATGGTAAGAGGA
TGGTCAGAGACTATGGCTGATGGCCACGAGACCAATAGGAGCCCCTAGAGAAGTACCAATGGGAG
TCGTGTCATTTCACCGTCACCTGAGACGAGTCGGATCTGTCGAGATACGAGGTATGACGTAGGTA
AAAGTGGGACTGAATTGAGTGAGAAAAGTACGAGAAGAGATTTCATAGAGCAGAGATAGAGATCG
TAGAGAGAGAGATCGTAGAGAATGAGATTGTAGAAATAGAGATTA
Right flanking sequence: Indices 99045 -- 99544
GGTCATAGAGGGAGAGATCGTAGAGATAGAATTCGTGAGTCCAAAGCGGTTGACACAAGTGAGAG
ACACCCCTTGGCCGCCCTTGGGTCGCCACGAAGCCGACGACGCGTCGGGTGCATGGCCATACACG
CGATTTTGACTCAAGCAGTAGAGCCAGACTAGAACGACAATGGGCTTATTAGCCACGATTCTATG
CCTTTGTACTCGTGGCTTTGCCATACACAAGCAGGCTTGTGAACATTTACCATTGACACGACAAC
GATTTATTGTGGCCCTCGGACCATGCTAATTTGTGGCATGCTAAAATTAGGGCATGCTAGAATTA
GGGCATGCTAGAATTATGGCATGCTTGAATTAAGGCATGCTAGAATGACATGCTAAGATTGGTGG
CACGAAATTGGTGGCACAAAGTTTGAAATAAAGCCAGGTTTGTGGACTTCGCAAGCCATTGACAC
ACAGAGAGACGATCTAGCAGTAGCGAGGGATGGAAGATCTTCGAG
Found at i:99080 original size:15 final size:14
Alignment explanation
Indices: 98888--99076 Score: 87
Period size: 15 Copynumber: 12.8 Consensus size: 14
98878 TTCATAGAGC
98888 AGAGATAGAGATCGT
1 AGAGATAGA-ATCGT
*
98903 AGAGAGAGAGATCGT
1 AGAGATAGA-ATCGT
*
98918 AGAGA-ATGAGATTGT
1 AGAGATA-GA-ATCGT
*
98933 AGAAATAGAGAT--T
1 AGAGATAGA-ATCGT
*
98946 AGAGATAGACAGCGT
1 AGAGATAGA-ATCGT
* *
98961 GGAGATAGAAATGGT
1 AGAGATAG-AATCGT
* * *
98976 GGAGATAAAAATAGT
1 AGAGAT-AGAATCGT
*
98991 AGAGGTAGAAATCGT
1 AGAGATAG-AATCGT
*
99006 GGAGATAGAAGTCGT
1 AGAGATAGAA-TCGT
*
99021 GGAGATAGAAATCGT
1 AGAGATAG-AATCGT
* * *
99036 GGAGATAGAGGTCAT
1 AGAGATAGA-ATCGT
**
99051 AGAGGGAGAGATCGT
1 AGAGATAGA-ATCGT
99066 AGAGATAGAAT
1 AGAGATAGAAT
99077 TCGTGAGTCC
Statistics
Matches: 138, Mismatches: 26, Indels: 21
0.75 0.14 0.11
Matches are distributed among these distances:
13 10 0.07
14 7 0.05
15 116 0.84
16 5 0.04
ACGTcount: A:0.41, C:0.05, G:0.35, T:0.19
Consensus pattern (14 bp):
AGAGATAGAATCGT
Left flanking sequence: Indices 98388 -- 98887
TTCTTGTCTTCGTACTGGCAGATGAAGAAGGCGGGCAACATCTAAGTTAGCATATAGTAATTAAG
GTATTTATATTGATTTTGTAGAGAAGAGAGGGGAGAGGAGGAGAAAGGAGGAGAGAAGAAGGAAG
AAGGAAGAAGGAAGACAGAAAGGAAAAAGGAGAATGGAAACAGAGGAAACAGCAAGGATTGAGTG
AAGAGAAGACGTGGGTTATCGCTGAGAGTTTAAACGGGGTCACTAGACGTCTTGCTCAATTGGTG
AGGTGGGGTAGGTATGGTTAAGATCTATGGTGAGAGGATGGAAGAGGATGGTAAGAGGATGGTCA
GAGACTATGGCTGATGGCCACGAGACCAATAGGAGCCCCTAGAGAAGTACCAATGGGAGTCGTGT
CATTTCACCGTCACCTGAGACGAGTCGGATCTGTCGAGATACGAGGTATGACGTAGGTAAAAGTG
GGACTGAATTGAGTGAGAAAAGTACGAGAAGAGATTTCATAGAGC
Right flanking sequence: Indices 99077 -- 99576
TCGTGAGTCCAAAGCGGTTGACACAAGTGAGAGACACCCCTTGGCCGCCCTTGGGTCGCCACGAA
GCCGACGACGCGTCGGGTGCATGGCCATACACGCGATTTTGACTCAAGCAGTAGAGCCAGACTAG
AACGACAATGGGCTTATTAGCCACGATTCTATGCCTTTGTACTCGTGGCTTTGCCATACACAAGC
AGGCTTGTGAACATTTACCATTGACACGACAACGATTTATTGTGGCCCTCGGACCATGCTAATTT
GTGGCATGCTAAAATTAGGGCATGCTAGAATTAGGGCATGCTAGAATTATGGCATGCTTGAATTA
AGGCATGCTAGAATGACATGCTAAGATTGGTGGCACGAAATTGGTGGCACAAAGTTTGAAATAAA
GCCAGGTTTGTGGACTTCGCAAGCCATTGACACACAGAGAGACGATCTAGCAGTAGCGAGGGATG
GAAGATCTTCGAGGTCTTAGGTACTTAAGACTTTAAGACCTCAAG
Found at i:99360 original size:16 final size:16
Alignment explanation
Indices: 99339--99415 Score: 118
Period size: 16 Copynumber: 4.8 Consensus size: 16
99329 GCTAATTTGT
*
99339 GGCATGCTAAAATTAG
1 GGCATGCTAGAATTAG
99355 GGCATGCTAGAATTAG
1 GGCATGCTAGAATTAG
*
99371 GGCATGCTAGAATTAT
1 GGCATGCTAGAATTAG
* *
99387 GGCATGCTTGAATTAA
1 GGCATGCTAGAATTAG
99403 GGCATGCTAGAAT
1 GGCATGCTAGAAT
99416 GACATGCTAA
Statistics
Matches: 56, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 56 1.00
ACGTcount: A:0.32, C:0.13, G:0.27, T:0.27
Consensus pattern (16 bp):
GGCATGCTAGAATTAG
Left flanking sequence: Indices 98839 -- 99338
AGTGGGACTGAATTGAGTGAGAAAAGTACGAGAAGAGATTTCATAGAGCAGAGATAGAGATCGTA
GAGAGAGAGATCGTAGAGAATGAGATTGTAGAAATAGAGATTAGAGATAGACAGCGTGGAGATAG
AAATGGTGGAGATAAAAATAGTAGAGGTAGAAATCGTGGAGATAGAAGTCGTGGAGATAGAAATC
GTGGAGATAGAGGTCATAGAGGGAGAGATCGTAGAGATAGAATTCGTGAGTCCAAAGCGGTTGAC
ACAAGTGAGAGACACCCCTTGGCCGCCCTTGGGTCGCCACGAAGCCGACGACGCGTCGGGTGCAT
GGCCATACACGCGATTTTGACTCAAGCAGTAGAGCCAGACTAGAACGACAATGGGCTTATTAGCC
ACGATTCTATGCCTTTGTACTCGTGGCTTTGCCATACACAAGCAGGCTTGTGAACATTTACCATT
GACACGACAACGATTTATTGTGGCCCTCGGACCATGCTAATTTGT
Right flanking sequence: Indices 99416 -- 99915
GACATGCTAAGATTGGTGGCACGAAATTGGTGGCACAAAGTTTGAAATAAAGCCAGGTTTGTGGA
CTTCGCAAGCCATTGACACACAGAGAGACGATCTAGCAGTAGCGAGGGATGGAAGATCTTCGAGG
TCTTAGGTACTTAAGACTTTAAGACCTCAAGTCCTTCAGACCTTAAGACCTTAAGATCTAAAGAC
CTTTAAGACCTTTAAGACTTTAAGACCTTAAGACCTTCAGACCTTAAGACCTTCAGACCTTCAAA
AGTCACAATAGACTCCCGTAATATCCAGTCTCCACATCTGCTGTGCCTCTCTGCTGTGTTTCTCT
GCTGTGCCTTGTGGCTGTTGACAATGCAAAGCCGCTTTTTTTAGGTGACGTCGTGAATGTATAAA
CTATGGCATCCAGTGGGCTGGCAAACACCCGAGTAGGCCTTTTTTCTAGACCCTAGCAGTGGCCT
TGCGACCACTGGGCTGAAAGCTCGTGTAATTCTTTAACGAGCCGA
Found at i:99673 original size:8 final size:8
Alignment explanation
Indices: 99555--99671 Score: 135
Period size: 8 Copynumber: 14.4 Consensus size: 8
99545 GTCTTAGGTA
99555 CTTAAGAC
1 CTTAAGAC
*
99563 TTTAAGAC
1 CTTAAGAC
* *
99571 CTCAAGTC
1 CTTAAGAC
*
99579 CTTCAGAC
1 CTTAAGAC
99587 CTTAAGAC
1 CTTAAGAC
*
99595 CTTAAGAT
1 CTTAAGAC
*
99603 CTAAAGAC
1 CTTAAGAC
99611 CTTTAAGAC
1 C-TTAAGAC
99620 CTTTAAGAC
1 C-TTAAGAC
*
99629 TTTAAGAC
1 CTTAAGAC
99637 CTTAAGAC
1 CTTAAGAC
*
99645 CTTCAGAC
1 CTTAAGAC
99653 CTTAAGAC
1 CTTAAGAC
*
99661 CTTCAGAC
1 CTTAAGAC
99669 CTT
1 CTT
99672 CAAAAGTCAC
Statistics
Matches: 91, Mismatches: 17, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
8 76 0.84
9 15 0.16
ACGTcount: A:0.33, C:0.26, G:0.12, T:0.29
Consensus pattern (8 bp):
CTTAAGAC
Left flanking sequence: Indices 99055 -- 99554
GGAGAGATCGTAGAGATAGAATTCGTGAGTCCAAAGCGGTTGACACAAGTGAGAGACACCCCTTG
GCCGCCCTTGGGTCGCCACGAAGCCGACGACGCGTCGGGTGCATGGCCATACACGCGATTTTGAC
TCAAGCAGTAGAGCCAGACTAGAACGACAATGGGCTTATTAGCCACGATTCTATGCCTTTGTACT
CGTGGCTTTGCCATACACAAGCAGGCTTGTGAACATTTACCATTGACACGACAACGATTTATTGT
GGCCCTCGGACCATGCTAATTTGTGGCATGCTAAAATTAGGGCATGCTAGAATTAGGGCATGCTA
GAATTATGGCATGCTTGAATTAAGGCATGCTAGAATGACATGCTAAGATTGGTGGCACGAAATTG
GTGGCACAAAGTTTGAAATAAAGCCAGGTTTGTGGACTTCGCAAGCCATTGACACACAGAGAGAC
GATCTAGCAGTAGCGAGGGATGGAAGATCTTCGAGGTCTTAGGTA
Right flanking sequence: Indices 99672 -- 100171
CAAAAGTCACAATAGACTCCCGTAATATCCAGTCTCCACATCTGCTGTGCCTCTCTGCTGTGTTT
CTCTGCTGTGCCTTGTGGCTGTTGACAATGCAAAGCCGCTTTTTTTAGGTGACGTCGTGAATGTA
TAAACTATGGCATCCAGTGGGCTGGCAAACACCCGAGTAGGCCTTTTTTCTAGACCCTAGCAGTG
GCCTTGCGACCACTGGGCTGAAAGCTCGTGTAATTCTTTAACGAGCCGAGCTGAAGCTCGTAATT
CTTCATTTAATCCGCCGGTTGGCTATTAACAAAACTTATGCCATCACTACCAAACGCCCTACGGA
CCCTAACGGTAGTGTTCCTGGGTGGCCAGGTCGTCGAACCGCACCCGTTTGCTCGTAGGAGGCGT
CAGCTCGTGGCCACGCGACCGCTTGAGCGACAGCCGCAACGGCACCGAGCCCCCGTTGGACCCAG
CGGACCCGTTGGCGGGCGGCAGCGGCGACGGCTCGAACCCGGGCG
Found at i:99730 original size:13 final size:13
Alignment explanation
Indices: 99712--99749 Score: 58
Period size: 13 Copynumber: 2.9 Consensus size: 13
99702 AGTCTCCACA
99712 TCTGCTGTGCCTC
1 TCTGCTGTGCCTC
**
99725 TCTGCTGTGTTTC
1 TCTGCTGTGCCTC
99738 TCTGCTGTGCCT
1 TCTGCTGTGCCT
99750 TGTGGCTGTT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.00, C:0.32, G:0.24, T:0.45
Consensus pattern (13 bp):
TCTGCTGTGCCTC
Left flanking sequence: Indices 99212 -- 99711
CAATGGGCTTATTAGCCACGATTCTATGCCTTTGTACTCGTGGCTTTGCCATACACAAGCAGGCT
TGTGAACATTTACCATTGACACGACAACGATTTATTGTGGCCCTCGGACCATGCTAATTTGTGGC
ATGCTAAAATTAGGGCATGCTAGAATTAGGGCATGCTAGAATTATGGCATGCTTGAATTAAGGCA
TGCTAGAATGACATGCTAAGATTGGTGGCACGAAATTGGTGGCACAAAGTTTGAAATAAAGCCAG
GTTTGTGGACTTCGCAAGCCATTGACACACAGAGAGACGATCTAGCAGTAGCGAGGGATGGAAGA
TCTTCGAGGTCTTAGGTACTTAAGACTTTAAGACCTCAAGTCCTTCAGACCTTAAGACCTTAAGA
TCTAAAGACCTTTAAGACCTTTAAGACTTTAAGACCTTAAGACCTTCAGACCTTAAGACCTTCAG
ACCTTCAAAAGTCACAATAGACTCCCGTAATATCCAGTCTCCACA
Right flanking sequence: Indices 99750 -- 100249
TGTGGCTGTTGACAATGCAAAGCCGCTTTTTTTAGGTGACGTCGTGAATGTATAAACTATGGCAT
CCAGTGGGCTGGCAAACACCCGAGTAGGCCTTTTTTCTAGACCCTAGCAGTGGCCTTGCGACCAC
TGGGCTGAAAGCTCGTGTAATTCTTTAACGAGCCGAGCTGAAGCTCGTAATTCTTCATTTAATCC
GCCGGTTGGCTATTAACAAAACTTATGCCATCACTACCAAACGCCCTACGGACCCTAACGGTAGT
GTTCCTGGGTGGCCAGGTCGTCGAACCGCACCCGTTTGCTCGTAGGAGGCGTCAGCTCGTGGCCA
CGCGACCGCTTGAGCGACAGCCGCAACGGCACCGAGCCCCCGTTGGACCCAGCGGACCCGTTGGC
GGGCGGCAGCGGCGACGGCTCGAACCCGGGCGGAAGCTCCGGCTCGTAGTCGTCGTCGTCGTCGT
CGGCAAACGACCGGAGAAGGTCGCCGGCGATGCCTGCGCCCAGGG
Found at i:100512 original size:24 final size:24
Alignment explanation
Indices: 100477--100526 Score: 75
Period size: 24 Copynumber: 2.1 Consensus size: 24
100467 AGACTCGGTC
*
100477 GAACCAGGCTGA-GACTCAGCCAGA
1 GAACCAGACTGAGGAC-CAGCCAGA
100501 GAACCAGACTGAGGACCAGCCAGA
1 GAACCAGACTGAGGACCAGCCAGA
100525 GA
1 GA
100527 CTCAACCTGA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
24 21 0.88
25 3 0.12
ACGTcount: A:0.36, C:0.28, G:0.30, T:0.06
Consensus pattern (24 bp):
GAACCAGACTGAGGACCAGCCAGA
Left flanking sequence: Indices 99977 -- 100476
ACTACCAAACGCCCTACGGACCCTAACGGTAGTGTTCCTGGGTGGCCAGGTCGTCGAACCGCACC
CGTTTGCTCGTAGGAGGCGTCAGCTCGTGGCCACGCGACCGCTTGAGCGACAGCCGCAACGGCAC
CGAGCCCCCGTTGGACCCAGCGGACCCGTTGGCGGGCGGCAGCGGCGACGGCTCGAACCCGGGCG
GAAGCTCCGGCTCGTAGTCGTCGTCGTCGTCGTCGGCAAACGACCGGAGAAGGTCGCCGGCGATG
CCTGCGCCCAGGGGAAGCTCGCGGGCCACCTCGGGGGCCACCACGGGGGGCGGTGAGCGGATGCG
ACGGGCCAGGAGCCGGATCTCGACGTCTTCGTCGGACGAGGACGAGGGCAGCGCGGCCAGCGCGG
CCTGGTAGGCGATGTCGAGCGAGTCTGAAGAAGTGGTGGGTTTGGATGCTTCGGAACCGGTCTGA
GGAGATGAGTTGGGCTTAGAACCGGGCTCGGACTGAGACTCGGTC
Right flanking sequence: Indices 100527 -- 101026
CTCAACCTGAGACCCAGCCTGGTTCCCAGGCTGAGAGCTCGATCCCGCCTCTGAAGCTGCAGCAC
CGGTGGCCCCAGGCTCAGAACCTGTTTCCTTCCCTGTTTCCTTCCCCGTTTCCTTCCCCGTTTCC
GTCGCTGCTTCGTCACCCTGCTGCGGGCTGTTCACGTCGTTCTCGTCGTCGTCCGAGTCAAACAG
CGACATCGAGAACCCAAGCAACCCGGGGCCCGCGGCGATCTCGTCGAGCGTGCCTCCAGTGTACC
CGGCCACGGGCTCGGGCGTGGTGGACGCGCGGGCAGAGCCCGGCCCGCTGTCGCCGCCCAGGGCC
TCCACGCTGGACTCCCGCTCACCCCGGGCCTCTCCGCCCGTCTGGCCCGCTGGCTCGCTCCCGTC
GCCGCCAGCCTTCGCAGCTCCGGCCGTCGCTCCCCCCACGGGCCCGCTCCGCGCCTTTCCGCCCA
CCATGAGCTCGATCTCCCGCTGGAGCGCCTCTCCGCCCGCCTCGA
Found at i:100543 original size:24 final size:24
Alignment explanation
Indices: 100477--100545 Score: 72
Period size: 24 Copynumber: 2.9 Consensus size: 24
100467 AGACTCGGTC
* *
100477 GAACCAGGCTGAGACTCAGCCAGA
1 GAACCAGACTGAGACCCAGCCAGA
100501 GAACCAGACTGAGGA-CCAGCCAGA
1 GAACCAGACTGA-GACCCAGCCAGA
100525 G-ACTCA-ACCTGAGACCCAGCC
1 GAAC-CAGA-CTGAGACCCAGCC
100546 TGGTTCCCAG
Statistics
Matches: 39, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
23 5 0.13
24 32 0.82
25 2 0.05
ACGTcount: A:0.33, C:0.33, G:0.26, T:0.07
Consensus pattern (24 bp):
GAACCAGACTGAGACCCAGCCAGA
Left flanking sequence: Indices 99977 -- 100476
ACTACCAAACGCCCTACGGACCCTAACGGTAGTGTTCCTGGGTGGCCAGGTCGTCGAACCGCACC
CGTTTGCTCGTAGGAGGCGTCAGCTCGTGGCCACGCGACCGCTTGAGCGACAGCCGCAACGGCAC
CGAGCCCCCGTTGGACCCAGCGGACCCGTTGGCGGGCGGCAGCGGCGACGGCTCGAACCCGGGCG
GAAGCTCCGGCTCGTAGTCGTCGTCGTCGTCGTCGGCAAACGACCGGAGAAGGTCGCCGGCGATG
CCTGCGCCCAGGGGAAGCTCGCGGGCCACCTCGGGGGCCACCACGGGGGGCGGTGAGCGGATGCG
ACGGGCCAGGAGCCGGATCTCGACGTCTTCGTCGGACGAGGACGAGGGCAGCGCGGCCAGCGCGG
CCTGGTAGGCGATGTCGAGCGAGTCTGAAGAAGTGGTGGGTTTGGATGCTTCGGAACCGGTCTGA
GGAGATGAGTTGGGCTTAGAACCGGGCTCGGACTGAGACTCGGTC
Right flanking sequence: Indices 100546 -- 101045
TGGTTCCCAGGCTGAGAGCTCGATCCCGCCTCTGAAGCTGCAGCACCGGTGGCCCCAGGCTCAGA
ACCTGTTTCCTTCCCTGTTTCCTTCCCCGTTTCCTTCCCCGTTTCCGTCGCTGCTTCGTCACCCT
GCTGCGGGCTGTTCACGTCGTTCTCGTCGTCGTCCGAGTCAAACAGCGACATCGAGAACCCAAGC
AACCCGGGGCCCGCGGCGATCTCGTCGAGCGTGCCTCCAGTGTACCCGGCCACGGGCTCGGGCGT
GGTGGACGCGCGGGCAGAGCCCGGCCCGCTGTCGCCGCCCAGGGCCTCCACGCTGGACTCCCGCT
CACCCCGGGCCTCTCCGCCCGTCTGGCCCGCTGGCTCGCTCCCGTCGCCGCCAGCCTTCGCAGCT
CCGGCCGTCGCTCCCCCCACGGGCCCGCTCCGCGCCTTTCCGCCCACCATGAGCTCGATCTCCCG
CTGGAGCGCCTCTCCGCCCGCCTCGAACGTGTCCACGGGCACCTG
Found at i:100629 original size:12 final size:12
Alignment explanation
Indices: 100615--100656 Score: 75
Period size: 12 Copynumber: 3.5 Consensus size: 12
100605 CTCAGAACCT
*
100615 GTTTCCTTCCCT
1 GTTTCCTTCCCC
100627 GTTTCCTTCCCC
1 GTTTCCTTCCCC
100639 GTTTCCTTCCCC
1 GTTTCCTTCCCC
100651 GTTTCC
1 GTTTCC
100657 GTCGCTGCTT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
12 29 1.00
ACGTcount: A:0.00, C:0.45, G:0.10, T:0.45
Consensus pattern (12 bp):
GTTTCCTTCCCC
Left flanking sequence: Indices 100115 -- 100614
CGTTGGACCCAGCGGACCCGTTGGCGGGCGGCAGCGGCGACGGCTCGAACCCGGGCGGAAGCTCC
GGCTCGTAGTCGTCGTCGTCGTCGTCGGCAAACGACCGGAGAAGGTCGCCGGCGATGCCTGCGCC
CAGGGGAAGCTCGCGGGCCACCTCGGGGGCCACCACGGGGGGCGGTGAGCGGATGCGACGGGCCA
GGAGCCGGATCTCGACGTCTTCGTCGGACGAGGACGAGGGCAGCGCGGCCAGCGCGGCCTGGTAG
GCGATGTCGAGCGAGTCTGAAGAAGTGGTGGGTTTGGATGCTTCGGAACCGGTCTGAGGAGATGA
GTTGGGCTTAGAACCGGGCTCGGACTGAGACTCGGTCGAACCAGGCTGAGACTCAGCCAGAGAAC
CAGACTGAGGACCAGCCAGAGACTCAACCTGAGACCCAGCCTGGTTCCCAGGCTGAGAGCTCGAT
CCCGCCTCTGAAGCTGCAGCACCGGTGGCCCCAGGCTCAGAACCT
Right flanking sequence: Indices 100657 -- 101156
GTCGCTGCTTCGTCACCCTGCTGCGGGCTGTTCACGTCGTTCTCGTCGTCGTCCGAGTCAAACAG
CGACATCGAGAACCCAAGCAACCCGGGGCCCGCGGCGATCTCGTCGAGCGTGCCTCCAGTGTACC
CGGCCACGGGCTCGGGCGTGGTGGACGCGCGGGCAGAGCCCGGCCCGCTGTCGCCGCCCAGGGCC
TCCACGCTGGACTCCCGCTCACCCCGGGCCTCTCCGCCCGTCTGGCCCGCTGGCTCGCTCCCGTC
GCCGCCAGCCTTCGCAGCTCCGGCCGTCGCTCCCCCCACGGGCCCGCTCCGCGCCTTTCCGCCCA
CCATGAGCTCGATCTCCCGCTGGAGCGCCTCTCCGCCCGCCTCGAACGTGTCCACGGGCACCTGG
CCAAACCGGGCCACCGCTTCGTCAAAAGCGGTGGTTTCCGCCACTACAAACATCTCCGCCTTCAC
CTTGGGGTCCACCACCACCCGGTGCGCTGCCACGAACTGGCGCCG
Found at i:102078 original size:22 final size:22
Alignment explanation
Indices: 102018--102068 Score: 66
Period size: 22 Copynumber: 2.3 Consensus size: 22
102008 ATGGGATGTG
* * *
102018 ATGTGGTTTAAGTGTGCTTGAA
1 ATGTGCTTCAAGTGTGCTCGAA
*
102040 ATGTGCTTCAAGTGTGCTCGAG
1 ATGTGCTTCAAGTGTGCTCGAA
102062 ATGTGCT
1 ATGTGCT
102069 CGAGATGTGC
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.20, C:0.12, G:0.31, T:0.37
Consensus pattern (22 bp):
ATGTGCTTCAAGTGTGCTCGAA
Left flanking sequence: Indices 101518 -- 102017
TCGCGCACCAACAGGTCCACCGTGAGGCGGCCGGGACCCGGTGGAGGCCCGCCCAACAGCTGGCC
CTGGATGTTGGTGGCCTGGATGATGAACGTCTCGATCTTCTGGAGCGTTTCCGGGGCAAACAACG
GCTGGCCCGTGGCGGTGCGCGCGGCCATCCACGTCTTGAACAAGTTGATCATGTTCTGGCGGGTG
GCGGTGTCAGGGACCATCGAGTAGGTCTCGCAGAAGAGCTTGGGGAGGTTTTTGGCAAACAACAG
CGTGTAGGGCGCGCCGATGTTCTTGCAGATCAGGTCCATGAGGTACATCGCGTAGAGCTTGTGTG
CTGGGAGCGCCTTGCGCACCCGCTGGTCGACGGCGTGGACGATGTTCGGGGCAAACAGCACGTTT
TCCTCGGCCAACGCGGTGAGCTCGGAGATGACGGCACGCAGGTTGAGGGTGAGCAGCGCAAGCAA
CTTGTTGAAGTAGTCTTCGTCGAAGCTCATGGTGGATGGGATGTG
Right flanking sequence: Indices 102069 -- 102568
CGAGATGTGCAAAGGGTGTGCAAAGGGTGTGCTGTCCGGTAAGTACTGGATGTACGGTTGGACAG
GTAGGTAGTGCTAGTACTGGGTAGTGCTAGTACTGGGTAGTGCTAGTACTGGGGTAGTGCTAGTA
GGGTAGTGCTAGTACTGATTGTAGTACTAGTCTGGTACTAGCTTGGTACTAGCTTGGACTAGCTT
GGACTAGCTTGGACTAGCTGGGACTAGCTTGGTAGTACGACTCGTACTAATGCAAAGACACTGGT
GGAAGTGCCTGGTTCAATGCAACCGCGTCTTCTGGTTGATCACTCGGGAAGGTCTCGACCGGTGT
GTTTCTCGATCAATCGGACGGGGGTTCCTCACGCGGCTGGGGTGTTCTCCACACTGGTGGTGTCA
ACCGCTTGCAACCGTTCTTCAGGCTCGTTAGTAGGGCCTCGGGTTAGTGGTGCCCTTGGCTGGTG
TTTCGACGCTTGTGTGGGTCGAGCCGTGAGATTAGTGCGTAGTAC
Found at i:102088 original size:11 final size:11
Alignment explanation
Indices: 102074--102100 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
102064 GTGCTCGAGA
102074 TGTGCAAAGGG
1 TGTGCAAAGGG
102085 TGTGCAAAGGG
1 TGTGCAAAGGG
102096 TGTGC
1 TGTGC
102101 TGTCCGGTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.22, C:0.11, G:0.44, T:0.22
Consensus pattern (11 bp):
TGTGCAAAGGG
Left flanking sequence: Indices 101574 -- 102073
CAGCTGGCCCTGGATGTTGGTGGCCTGGATGATGAACGTCTCGATCTTCTGGAGCGTTTCCGGGG
CAAACAACGGCTGGCCCGTGGCGGTGCGCGCGGCCATCCACGTCTTGAACAAGTTGATCATGTTC
TGGCGGGTGGCGGTGTCAGGGACCATCGAGTAGGTCTCGCAGAAGAGCTTGGGGAGGTTTTTGGC
AAACAACAGCGTGTAGGGCGCGCCGATGTTCTTGCAGATCAGGTCCATGAGGTACATCGCGTAGA
GCTTGTGTGCTGGGAGCGCCTTGCGCACCCGCTGGTCGACGGCGTGGACGATGTTCGGGGCAAAC
AGCACGTTTTCCTCGGCCAACGCGGTGAGCTCGGAGATGACGGCACGCAGGTTGAGGGTGAGCAG
CGCAAGCAACTTGTTGAAGTAGTCTTCGTCGAAGCTCATGGTGGATGGGATGTGATGTGGTTTAA
GTGTGCTTGAAATGTGCTTCAAGTGTGCTCGAGATGTGCTCGAGA
Right flanking sequence: Indices 102101 -- 102600
TGTCCGGTAAGTACTGGATGTACGGTTGGACAGGTAGGTAGTGCTAGTACTGGGTAGTGCTAGTA
CTGGGTAGTGCTAGTACTGGGGTAGTGCTAGTAGGGTAGTGCTAGTACTGATTGTAGTACTAGTC
TGGTACTAGCTTGGTACTAGCTTGGACTAGCTTGGACTAGCTTGGACTAGCTGGGACTAGCTTGG
TAGTACGACTCGTACTAATGCAAAGACACTGGTGGAAGTGCCTGGTTCAATGCAACCGCGTCTTC
TGGTTGATCACTCGGGAAGGTCTCGACCGGTGTGTTTCTCGATCAATCGGACGGGGGTTCCTCAC
GCGGCTGGGGTGTTCTCCACACTGGTGGTGTCAACCGCTTGCAACCGTTCTTCAGGCTCGTTAGT
AGGGCCTCGGGTTAGTGGTGCCCTTGGCTGGTGTTTCGACGCTTGTGTGGGTCGAGCCGTGAGAT
TAGTGCGTAGTACGTGTCACAAAGGAGCCCTGGAACAGTGGTCAC
Found at i:102158 original size:16 final size:16
Alignment explanation
Indices: 102137--102215 Score: 135
Period size: 16 Copynumber: 5.0 Consensus size: 16
102127 TGGACAGGTA
102137 GGTAGTGCTAGTACTG
1 GGTAGTGCTAGTACTG
102153 GGTAGTGCTAGTACTG
1 GGTAGTGCTAGTACTG
102169 GGTAGTGCTAGTACTGG
1 GGTAGTGCTAGTACT-G
102186 GGTAGTGCTAGTA--G
1 GGTAGTGCTAGTACTG
102200 GGTAGTGCTAGTACTG
1 GGTAGTGCTAGTACTG
102216 ATTGTAGTAC
Statistics
Matches: 60, Mismatches: 0, Indels: 6
0.91 0.00 0.09
Matches are distributed among these distances:
14 14 0.23
16 32 0.53
17 14 0.23
ACGTcount: A:0.19, C:0.11, G:0.39, T:0.30
Consensus pattern (16 bp):
GGTAGTGCTAGTACTG
Left flanking sequence: Indices 101637 -- 102136
GGCAAACAACGGCTGGCCCGTGGCGGTGCGCGCGGCCATCCACGTCTTGAACAAGTTGATCATGT
TCTGGCGGGTGGCGGTGTCAGGGACCATCGAGTAGGTCTCGCAGAAGAGCTTGGGGAGGTTTTTG
GCAAACAACAGCGTGTAGGGCGCGCCGATGTTCTTGCAGATCAGGTCCATGAGGTACATCGCGTA
GAGCTTGTGTGCTGGGAGCGCCTTGCGCACCCGCTGGTCGACGGCGTGGACGATGTTCGGGGCAA
ACAGCACGTTTTCCTCGGCCAACGCGGTGAGCTCGGAGATGACGGCACGCAGGTTGAGGGTGAGC
AGCGCAAGCAACTTGTTGAAGTAGTCTTCGTCGAAGCTCATGGTGGATGGGATGTGATGTGGTTT
AAGTGTGCTTGAAATGTGCTTCAAGTGTGCTCGAGATGTGCTCGAGATGTGCAAAGGGTGTGCAA
AGGGTGTGCTGTCCGGTAAGTACTGGATGTACGGTTGGACAGGTA
Right flanking sequence: Indices 102216 -- 102715
ATTGTAGTACTAGTCTGGTACTAGCTTGGTACTAGCTTGGACTAGCTTGGACTAGCTTGGACTAG
CTGGGACTAGCTTGGTAGTACGACTCGTACTAATGCAAAGACACTGGTGGAAGTGCCTGGTTCAA
TGCAACCGCGTCTTCTGGTTGATCACTCGGGAAGGTCTCGACCGGTGTGTTTCTCGATCAATCGG
ACGGGGGTTCCTCACGCGGCTGGGGTGTTCTCCACACTGGTGGTGTCAACCGCTTGCAACCGTTC
TTCAGGCTCGTTAGTAGGGCCTCGGGTTAGTGGTGCCCTTGGCTGGTGTTTCGACGCTTGTGTGG
GTCGAGCCGTGAGATTAGTGCGTAGTACGTGTCACAAAGGAGCCCTGGAACAGTGGTCACACCCA
GGTTTATTGTGTTTAGAGATGGCCGGTGTCAACCCGTTGCTGAGGTGAGCCTGCCCATCCTCGAA
ATTTGACAGGGTGACACTGAGCGCGGTCACGGGGGAGACGGTCAC
Found at i:102223 original size:49 final size:47
Alignment explanation
Indices: 102137--102233 Score: 133
Period size: 49 Copynumber: 2.0 Consensus size: 47
102127 TGGACAGGTA
*
102137 GGTAGTGCTAGTACTGGGTAGTGCTAGTACTGGGTAGTGCTAGTACTGG
1 GGTAGTGCTAGTAC-GGGTAGTGCTAGTACTGGGTAGTACTAGT-CTGG
*
102186 GGTAGTGCTAGTA-GGGTAGTGCTAGTACTGATTGTAGTACTAGTCTGG
1 GGTAGTGCTAGTACGGGTAGTGCTAGTACTG--GGTAGTACTAGTCTGG
102234 TACTAGCTTG
Statistics
Matches: 44, Mismatches: 2, Indels: 5
0.86 0.04 0.10
Matches are distributed among these distances:
47 17 0.39
48 4 0.09
49 23 0.52
ACGTcount: A:0.20, C:0.11, G:0.37, T:0.32
Consensus pattern (47 bp):
GGTAGTGCTAGTACGGGTAGTGCTAGTACTGGGTAGTACTAGTCTGG
Left flanking sequence: Indices 101637 -- 102136
GGCAAACAACGGCTGGCCCGTGGCGGTGCGCGCGGCCATCCACGTCTTGAACAAGTTGATCATGT
TCTGGCGGGTGGCGGTGTCAGGGACCATCGAGTAGGTCTCGCAGAAGAGCTTGGGGAGGTTTTTG
GCAAACAACAGCGTGTAGGGCGCGCCGATGTTCTTGCAGATCAGGTCCATGAGGTACATCGCGTA
GAGCTTGTGTGCTGGGAGCGCCTTGCGCACCCGCTGGTCGACGGCGTGGACGATGTTCGGGGCAA
ACAGCACGTTTTCCTCGGCCAACGCGGTGAGCTCGGAGATGACGGCACGCAGGTTGAGGGTGAGC
AGCGCAAGCAACTTGTTGAAGTAGTCTTCGTCGAAGCTCATGGTGGATGGGATGTGATGTGGTTT
AAGTGTGCTTGAAATGTGCTTCAAGTGTGCTCGAGATGTGCTCGAGATGTGCAAAGGGTGTGCAA
AGGGTGTGCTGTCCGGTAAGTACTGGATGTACGGTTGGACAGGTA
Right flanking sequence: Indices 102234 -- 102733
TACTAGCTTGGTACTAGCTTGGACTAGCTTGGACTAGCTTGGACTAGCTGGGACTAGCTTGGTAG
TACGACTCGTACTAATGCAAAGACACTGGTGGAAGTGCCTGGTTCAATGCAACCGCGTCTTCTGG
TTGATCACTCGGGAAGGTCTCGACCGGTGTGTTTCTCGATCAATCGGACGGGGGTTCCTCACGCG
GCTGGGGTGTTCTCCACACTGGTGGTGTCAACCGCTTGCAACCGTTCTTCAGGCTCGTTAGTAGG
GCCTCGGGTTAGTGGTGCCCTTGGCTGGTGTTTCGACGCTTGTGTGGGTCGAGCCGTGAGATTAG
TGCGTAGTACGTGTCACAAAGGAGCCCTGGAACAGTGGTCACACCCAGGTTTATTGTGTTTAGAG
ATGGCCGGTGTCAACCCGTTGCTGAGGTGAGCCTGCCCATCCTCGAAATTTGACAGGGTGACACT
GAGCGCGGTCACGGGGGAGACGGTCACGTGGAAATATACAGGTGG
Done.