Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: scaffold16
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 224189
ACGTcount: A:0.22, C:0.28, G:0.28, T:0.22
File 1 of 2
Found at i:37 original size:26 final size:26
Alignment explanation
Indices: 1--98 Score: 196
Period size: 26 Copynumber: 3.8 Consensus size: 26
1 AAATGCTGAGAAAAGATTCTAACCGC
1 AAATGCTGAGAAAAGATTCTAACCGC
27 AAATGCTGAGAAAAGATTCTAACCGC
1 AAATGCTGAGAAAAGATTCTAACCGC
53 AAATGCTGAGAAAAGATTCTAACCGC
1 AAATGCTGAGAAAAGATTCTAACCGC
79 AAATGCTGAGAAAAGATTCT
1 AAATGCTGAGAAAAGATTCT
99 GTTATCGTAA
Statistics
Matches: 72, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 72 1.00
ACGTcount: A:0.43, C:0.17, G:0.19, T:0.20
Consensus pattern (26 bp):
AAATGCTGAGAAAAGATTCTAACCGC
Left flanking sequence: None
Right flanking sequence: Indices 99 -- 598
GTTATCGTAAGATGCGCGTGTTCGAATCACGTCGATGTCACCATGATAGGAATCCGGTCCTTGAG
GGGCCCGAGATACCGTGGGGTTAGAGACGTTGTCTCTTTCAGAAGGTCTCGACATTTCGCTAAAA
CACTCAATTGATCAATAAGCTTTACTTGTACGGTTTAGAGTCCTCGATCACGTACTATTAACACT
GGAATAGTAGTATGAAAGTGAGGATATAAATTAAACAGTAAACAAGAATTCTATTTTTGTACCAG
TGTCCGCCCCATATCCGTCGTCTAAGACGCTATACGCAGGCGTGCCTGGTTTTACTAAATTATCT
AACCGAAAACAGTACTGACACAAAATGGTCAGAACTGTAGTTTTCCATCATAGACTTTTGAAATG
GCAACGGGGTCATGTGCAACAACGCACAAGTCTTGCACAGCTTGTTCTCTAAGTTCGAGATAACT
ACTCTGGCAAGGTATTGACTTTGGCTGAAACCGAAATGCATAGAC
Found at i:5410 original size:24 final size:21
Alignment explanation
Indices: 5382--5432 Score: 75
Period size: 24 Copynumber: 2.3 Consensus size: 21
5372 CATTGTAACG
5382 GGGGTAGCCGTAACCGTAACCGTA
1 GGGGTAGCCGTAACC---ACCGTA
5406 GGGGTAGCCGTAACCACCGTA
1 GGGGTAGCCGTAACCACCGTA
5427 GGGGTA
1 GGGGTA
5433 TCTGTAGTAA
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
21 12 0.44
24 15 0.56
ACGTcount: A:0.24, C:0.24, G:0.37, T:0.16
Consensus pattern (21 bp):
GGGGTAGCCGTAACCACCGTA
Left flanking sequence: Indices 4882 -- 5381
ACAACTCCTCTTCTACTTTACTTCTAAAACAATTCACCTTCAAAATGGTTCTACTACTGGACAAT
CAATTGAAAATACGAGATAAGATGTGGGTGATTCATACTATTATCGTAAGTTGAACGTTGATCGT
GAAATTTGCGTATTGTCTTTTGAACGAGCTAGGCCAAAAACTCTGTCTGCTCTTTCTCTACTGCC
AACTCCAATGTTACCTCTCGCGTTTCCGAGCACACAAACTGTAGCCTCCTTGCCGAACCTCAAAC
AACTGCTTTTTCAGGCTATGCCGCACCTATTTTGAGTACCTCAGAAAACACCACAAAACTGGTCT
GTGTCGCAAACCGTTTCGTAAACTACGGAATCACTTTTGTTAAGCATAGCATGTATTACCCTTTA
AATAATTAGCCCACGCTTGTTTTATCTTTTCAAGTCAGGTATTCAACAAATCAACAGTGGTTCAA
TCTATCCTAAGGACAGATCGTTTACCACCACCAGCCATTGTAACG
Right flanking sequence: Indices 5433 -- 5932
TCTGTAGTAACCATTCCACCAGTTGCCCCAGCCGTAACGCCAGAACAAACCGTTGGCAGCATCCT
TAGGCAAGTCCTTACCCTGAGCCTCAGCAACAGCCTTGTCACCAGCCTCCTTGGACTCGTTGTAG
GCGTCAGCAATACCCTGAGCCTGGTCGTGAGGAATCAGGGCACCGTTCTTGGCGGCGGCTTCCTC
AATCTGCTCAGCGGTGGGCTTGATGGCAGCGTTGGCAGCGTCCTGGGGGATGTCCTCACCGGGCA
CGGGGATAGCGAGAGCGGCAGTAGCCAACAAGATAATGTTCATAAACTTCATGGTATTCGGGGTG
TTAGTTGATAGAGAAAACCTAGGGGGGTACCCGGCCTATTTATATTCAAAATTTGGCCCCCTAGT
GCTGCAAAAGTCGAGGAGGGCTCTCGTTATCACTATATTTTTTAGTTGCTAAAAGTCGCGCATGG
TACCTGTTTTAAATTTAGCTAGGCCTAAAAAATATACTCGGGTCC
Found at i:8180 original size:13 final size:13
Alignment explanation
Indices: 8162--8190 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
8152 AAGGGTCTTC
8162 CCACTGGTCCTAT
1 CCACTGGTCCTAT
8175 CCACTGGTCCTAT
1 CCACTGGTCCTAT
8188 CCA
1 CCA
8191 GTGTTAACTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.17, C:0.41, G:0.14, T:0.28
Consensus pattern (13 bp):
CCACTGGTCCTAT
Left flanking sequence: Indices 7662 -- 8161
GGGGCCGGGTTTGGAAACGGAATTGGCCGTGGCAGTGTGCGCTCGTAGTTGGATTAGGCAATTGT
TGTTTACAAAGCGGGTGTTCGTATTGGCACTAGGTTGCTTGTGCTTTCGAGTGCTTGCGGTCACT
TAAGACCTAATGGGTCCCCCCTCGGCCTACTCCGGTCGTGAAACCCCCACACAAAGAAACAATTG
TGGGGCCTCCCGACTTAATGACAACCAACGGCCACAAAACCGAATTGGTCGAATTCCGTGCCTCC
AGGGTGAAAAATCAGAATTACTTCTGCCGACCCCTTGCATCCCCTGGCGGCCCCTGGCGGCTACC
CGGCGGTTAAGTTTGCACACTCAACCCCTGACAGTGTCCTGATACCCCTGAAGTCTTCCTAGTCT
GGCCAACCCGCTTCGAAACTCAGACTTTCCATTCCCAATTTTTACAAATTCCAGTCCCCTCAACA
GACCACCAAAAGGTTCTACCATTTGGTACAACACAAAGGGTCTTC
Right flanking sequence: Indices 8191 -- 8690
GTGTTAACTACACCCTTGACCGGACCCGTCCACAACTTCTCTACTCTAAAATTTATTCCATACCT
AAAGCTTGGCCCGCTTCTGCACGGACGAAAAGTCCAACAACCCCTCCTGAATGATGGTGGCAACA
TGGGCGCCCTTGCTGTTGTAGATCTCCGCCTCCACCAACGCCCGGCTGTTGGCCACCCGCACCGG
GCGGTGGGTAAACGTCATCCACTGGGTCACGTCAAAGTCGTCGTCGTGGAAGTACATGATGTGGT
CCAACAGCACCGACCCGTAGTTAAAGAACCCCTCAAGGTCGAGTCTCATCGACCGCGTCAAAAAC
CCAAGGAAGGCCAGGTCCAGCAACACCGCGAGCCCGGCAAACTGGTAGGTGGGGTTCATCCCGGT
GATGGGCTGGTTGTGCCCGTCCTCGGTGCACCCCAACTTGGCCATCCACGCCATCTTGCGGTCAA
CCACGTCCTGCTTCTCCTCGTATTTGGTGAGACTCAAGTCCCACA
Found at i:9746 original size:11 final size:11
Alignment explanation
Indices: 9724--9783 Score: 75
Period size: 11 Copynumber: 5.5 Consensus size: 11
9714 TGTATGAAAC
*
9724 TGTGCAAGCGG
1 TGTGCAAACGG
*
9735 TGTGTAAACGG
1 TGTGCAAACGG
9746 TGTGCAAACGG
1 TGTGCAAACGG
* *
9757 TGTGCAAATGA
1 TGTGCAAACGG
*
9768 TGTGCAAGCGG
1 TGTGCAAACGG
9779 TGTGC
1 TGTGC
9784 GAATCGAGTG
Statistics
Matches: 41, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
11 41 1.00
ACGTcount: A:0.23, C:0.15, G:0.38, T:0.23
Consensus pattern (11 bp):
TGTGCAAACGG
Left flanking sequence: Indices 9224 -- 9723
GTCTGGGTCACCCCCAAAACGTCGTCGATGTTGATCGGACCCTCAGGATAAAGCAGCATCGTCGA
TCTAAGTGGCACACAGCAGCTGAGAGTGTTTTAACTTGACCCCACAATTTTCATGTGCGTCTGCC
GCGCGAATGCCGAGATGCCGGTAGGGATGCGGGGTGAGCGGTGATGGCAGCCGTTAGCCGCTAGT
GAACGACGCAAAGGCTAATGGGCGAGGTGGCATCGCGTGGCTGACGTGGTCCGGGGGGAAAATGG
GCCCAGAGTGCCCCACACTGCCCCACATTTTCGGAGTCGACGTCCGATGCTGACTAAGCAACGGC
CAACGAGCCGCTGACATATGGGTCCGATGAAACGGGACAATAGCGTGGCAGCAGATGCTTATGAT
AGTGGCCGGAGTTTAGGCGGGGCGTGACCGAGGTTGGTGGTGGGTGGGGTATGCCAAGGGAAGGT
GTTTGAGAATGTATTGAATTGCGGTCTTGTGGGTATGTATGAAAC
Right flanking sequence: Indices 9784 -- 10283
GAATCGAGTGTAAGCCGGGTGCTAGAGACGTGCCTTTAACGGAACTTAAAACGTTTATAGACGTA
TTGACGCATCTTTGATGTATTTTGGGTGCTATGTTTGTCCGATGTATTTTGAGCGTTTAACTTAC
TATTAGAATCTTTCAGTTATTGGACGCAACCGATTTGGGTAAGAAAATGCGCAATTTATTGGGAC
GGTATCTGTCTATTCTAATTCGTAGATCTCGGGGTGGTGCTCCTCGGGAAGCTCCACCTGGTGCA
CAAGGCCCGTCACGGTGTCGTAGACAAGAGCCCACACCTCCAATTCACGCTTCTCCACCGCTGTG
GCCACCGCAGGCAACTTGCGGACCACCTGCGCCGACTGCGCGGCGTTAAACGTGGCCAACATGTC
CAACTGGTCGTGCTCGGACTCTGTCTGGTTCAATTGAGTGTAGAAAGTGTCACGAAGGGTCCGAA
TCGGCTGCAACCAGGTGTCAATGACCCCACCTACCGCCAGCTTGC
Found at i:9798 original size:22 final size:22
Alignment explanation
Indices: 9724--9783 Score: 84
Period size: 22 Copynumber: 2.7 Consensus size: 22
9714 TGTATGAAAC
* * *
9724 TGTGCAAGCGGTGTGTAAACGG
1 TGTGCAAGCGGTGTGCAAATGA
*
9746 TGTGCAAACGGTGTGCAAATGA
1 TGTGCAAGCGGTGTGCAAATGA
9768 TGTGCAAGCGGTGTGC
1 TGTGCAAGCGGTGTGC
9784 GAATCGAGTG
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 33 1.00
ACGTcount: A:0.23, C:0.15, G:0.38, T:0.23
Consensus pattern (22 bp):
TGTGCAAGCGGTGTGCAAATGA
Left flanking sequence: Indices 9224 -- 9723
GTCTGGGTCACCCCCAAAACGTCGTCGATGTTGATCGGACCCTCAGGATAAAGCAGCATCGTCGA
TCTAAGTGGCACACAGCAGCTGAGAGTGTTTTAACTTGACCCCACAATTTTCATGTGCGTCTGCC
GCGCGAATGCCGAGATGCCGGTAGGGATGCGGGGTGAGCGGTGATGGCAGCCGTTAGCCGCTAGT
GAACGACGCAAAGGCTAATGGGCGAGGTGGCATCGCGTGGCTGACGTGGTCCGGGGGGAAAATGG
GCCCAGAGTGCCCCACACTGCCCCACATTTTCGGAGTCGACGTCCGATGCTGACTAAGCAACGGC
CAACGAGCCGCTGACATATGGGTCCGATGAAACGGGACAATAGCGTGGCAGCAGATGCTTATGAT
AGTGGCCGGAGTTTAGGCGGGGCGTGACCGAGGTTGGTGGTGGGTGGGGTATGCCAAGGGAAGGT
GTTTGAGAATGTATTGAATTGCGGTCTTGTGGGTATGTATGAAAC
Right flanking sequence: Indices 9784 -- 10283
GAATCGAGTGTAAGCCGGGTGCTAGAGACGTGCCTTTAACGGAACTTAAAACGTTTATAGACGTA
TTGACGCATCTTTGATGTATTTTGGGTGCTATGTTTGTCCGATGTATTTTGAGCGTTTAACTTAC
TATTAGAATCTTTCAGTTATTGGACGCAACCGATTTGGGTAAGAAAATGCGCAATTTATTGGGAC
GGTATCTGTCTATTCTAATTCGTAGATCTCGGGGTGGTGCTCCTCGGGAAGCTCCACCTGGTGCA
CAAGGCCCGTCACGGTGTCGTAGACAAGAGCCCACACCTCCAATTCACGCTTCTCCACCGCTGTG
GCCACCGCAGGCAACTTGCGGACCACCTGCGCCGACTGCGCGGCGTTAAACGTGGCCAACATGTC
CAACTGGTCGTGCTCGGACTCTGTCTGGTTCAATTGAGTGTAGAAAGTGTCACGAAGGGTCCGAA
TCGGCTGCAACCAGGTGTCAATGACCCCACCTACCGCCAGCTTGC
Found at i:17362 original size:26 final size:26
Alignment explanation
Indices: 17328--17380 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17318 CTTTCTCACT
17328 ACGATCTTACTCTATCTTATTCATTC
1 ACGATCTTACTCTATCTTATTCATTC
*
17354 ACGATCTTACTCTATCTTGTTCATTC
1 ACGATCTTACTCTATCTTATTCATTC
17380 A
1 A
17381 TTGTCGTTAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.23, C:0.26, G:0.06, T:0.45
Consensus pattern (26 bp):
ACGATCTTACTCTATCTTATTCATTC
Left flanking sequence: Indices 16828 -- 17327
GTCCCACTGCATCCCCGCACGCGTCATTTTGAAGACGCTCGTGTTCAACTTGATTGGGGCGTACA
CCGCGAAACCGCAGTTGGTGCAACAGCTCATGGAGTTGGCGGCCGAGTTTGACGAGCGCTTGAGC
TTGGGACAGAAGGCAATCTTCCACTTGGAGGGGTTCGTGGCCAAGGCGATGGTGGCGATCCAAAA
GGCATAATGATAGAAAATGAACGATTAAGAAGAACGGGTGGAGCAGGTGGTGGGGGTGGTGGGTG
GATTAAACTATGGTATTGTAGTTTCGTAGTATTAGAGTCGCGTGAGGGTTGGGGTGTGTTTTAGT
TGGCCGTTAGAGGTGTTATGACGTCGTAGATTTACTACTTCTACATTTGAGCAATCGAGACTATA
CGGTCGTGAGAATATCCAGCTAACTCGCAAACCAACCCGCTTTACTTCGCTCATTTCTTTGCTCA
CTTTCCATCCCGTTTTGCTTGGTATCTCTAATATTCTTTCTCACT
Right flanking sequence: Indices 17381 -- 17880
TTGTCGTTACATACCTAATGTTGCACCTTGTTATCCGTGGGCTTGGCCGCAGAGGAGCTGCTCCC
CTGGACGTCGTCGTAGCTCGGAAGGAGGTCGCCAGAGGTGGGGATGTAGTGGCTAGTGGCCTGGG
CCGGTTGCGGCTTAGGACCGCTGGAGGAGGAGGGGCCCGAGGAAGGACCCGCGGAGGGACCGTCG
GGAATGTCGCGCTCGCGGTCGTCAAGCAGCTGGTACCCGTCGCGACGGCTCAGACGGCCACGGTG
GGTGGCAACAAAGTACACACCGTAGACAATCCCGGGGATGTGGCCACAGAGGGTCAACAACACCA
CCAACAACGTCAGCAGGTTCCACACACAGTAATCGTTGAGAATGATCACCGGAAGCGGCGGGAAA
ATGCACGCAAGCACGATCAAGAGGAGCGTCTGGACGCTGTTCTGTTGTCTCATGGTGGCGGGATC
TTGGTGGTGTATTTGGAAATTGAGTGCGGGTCATGCATGGAGCCA
Found at i:23327 original size:15 final size:15
Alignment explanation
Indices: 23265--23341 Score: 58
Period size: 15 Copynumber: 5.5 Consensus size: 15
23255 GAATAACCAT
* *
23265 TGGGGTTGAAAGTAG
1 TGGGGATGAGAGTAG
* *
23280 TGGGAATGATAGTAG
1 TGGGGATGAGAGTAG
* *
23295 T-GAGATGAGAG--C
1 TGGGGATGAGAGTAG
23307 TGGGGATGAGAGTAG
1 TGGGGATGAGAGTAG
23322 TGGGGA--A-AGTAG
1 TGGGGATGAGAGTAG
23334 TGGGGATG
1 TGGGGATG
23342 TGAATGGGCA
Statistics
Matches: 48, Mismatches: 9, Indels: 11
0.71 0.13 0.16
Matches are distributed among these distances:
12 12 0.25
13 10 0.21
14 7 0.15
15 19 0.40
ACGTcount: A:0.29, C:0.01, G:0.48, T:0.22
Consensus pattern (15 bp):
TGGGGATGAGAGTAG
Left flanking sequence: Indices 22765 -- 23264
GTGCCGTTTGAAGGGTTGTTGCCTTACGCGATCATGACCGCGTTCTTCGGTCTCGCCGGTCACGG
AACCGAGTGGGTGAGATACTGGGACAACGGCTGGAAGAAGGACCGTTACGACCTCGACAAGTGGG
ACGACATGATGATGGAGCGCGACTTCCGGTTGACGGGGGTGCGTCGGGGCCAGTCGCAGGAGCCG
GTGGCGCCGGACCACTTCAAAACGTCCCAGCTCACCGTCCAGGAGTACTACACCCCGTACCGGGA
CCAGTTCTTTGCCTTCAGAGAGCGTCTTTACCGCGGCTACACCACCGGGAACTGGGATTTCTCGT
AGAGCCGGATCTTTGCATATCAATAAACGTATTAAAGAGTGTGTGTAGGTGTGGTTGTGTGGATG
GGTGGTGTCAATTGGACTACCATGGGTTGAAGACCATGGTAGTCAGAGTCACGACCGGACAACTA
TACTAGCCATTGAGAAAAACCATTAAAACCATAAGGAATAACCAT
Right flanking sequence: Indices 23342 -- 23841
TGAATGGGCACAGGTAAAAAGTGGCTATTTCGTCATTCATAAAACCGTTCCATACCATCTATTTA
GTACGAATTACTTGCTAATGGGTGCACCTACACCACCTTGTTACAAGATATCCACAATCTCTTTG
CGACATTCCACAAAACAACCGCACGGCTGGGTTCCTGGCTAACGTCGCGTGTTTGCACCTCTGTG
GTCGTTTCCCCGCCATTCACCACATTGTCGAAAAAGTAACAAAGTCTGAAAAAACACCACCAAAC
AACCTAGACCCCACGTAGTCACTGTAGTATACGCCAACGTAGACACCGGTTATGATAAACCACCC
ATTCTCACCGACACTACTCGATCCCATCAACCCTACCCACTTTCTCCCATATTCTCATTAATTAG
ACTCGGAACCAGTCCCACAGCCTATATAAATAACTAACCCCACAACCGCTTGATAAACAAGTCCA
TGCGCACGTTGATCTTGGCCTGGCCCACCGCCCACGGGTGCTGGA
Found at i:23337 original size:27 final size:26
Alignment explanation
Indices: 23272--23341 Score: 70
Period size: 27 Copynumber: 2.6 Consensus size: 26
23262 CATTGGGGTT
* *
23272 GAAAGTAGTGGGAATGATAGTAGTGA
1 GAAAGTAGTGGGGATGAGAGTAGTGA
* *
23298 GATGAG-AGCTGGGGATGAGAGTAGTGGG
1 GA-AAGTAG-TGGGGATGAGAGTAGT-GA
23326 GAAAGTAGTGGGGATG
1 GAAAGTAGTGGGGATG
23342 TGAATGGGCA
Statistics
Matches: 35, Mismatches: 5, Indels: 7
0.74 0.11 0.15
Matches are distributed among these distances:
26 4 0.11
27 26 0.74
28 5 0.14
ACGTcount: A:0.31, C:0.01, G:0.47, T:0.20
Consensus pattern (26 bp):
GAAAGTAGTGGGGATGAGAGTAGTGA
Left flanking sequence: Indices 22772 -- 23271
TTGAAGGGTTGTTGCCTTACGCGATCATGACCGCGTTCTTCGGTCTCGCCGGTCACGGAACCGAG
TGGGTGAGATACTGGGACAACGGCTGGAAGAAGGACCGTTACGACCTCGACAAGTGGGACGACAT
GATGATGGAGCGCGACTTCCGGTTGACGGGGGTGCGTCGGGGCCAGTCGCAGGAGCCGGTGGCGC
CGGACCACTTCAAAACGTCCCAGCTCACCGTCCAGGAGTACTACACCCCGTACCGGGACCAGTTC
TTTGCCTTCAGAGAGCGTCTTTACCGCGGCTACACCACCGGGAACTGGGATTTCTCGTAGAGCCG
GATCTTTGCATATCAATAAACGTATTAAAGAGTGTGTGTAGGTGTGGTTGTGTGGATGGGTGGTG
TCAATTGGACTACCATGGGTTGAAGACCATGGTAGTCAGAGTCACGACCGGACAACTATACTAGC
CATTGAGAAAAACCATTAAAACCATAAGGAATAACCATTGGGGTT
Right flanking sequence: Indices 23342 -- 23841
TGAATGGGCACAGGTAAAAAGTGGCTATTTCGTCATTCATAAAACCGTTCCATACCATCTATTTA
GTACGAATTACTTGCTAATGGGTGCACCTACACCACCTTGTTACAAGATATCCACAATCTCTTTG
CGACATTCCACAAAACAACCGCACGGCTGGGTTCCTGGCTAACGTCGCGTGTTTGCACCTCTGTG
GTCGTTTCCCCGCCATTCACCACATTGTCGAAAAAGTAACAAAGTCTGAAAAAACACCACCAAAC
AACCTAGACCCCACGTAGTCACTGTAGTATACGCCAACGTAGACACCGGTTATGATAAACCACCC
ATTCTCACCGACACTACTCGATCCCATCAACCCTACCCACTTTCTCCCATATTCTCATTAATTAG
ACTCGGAACCAGTCCCACAGCCTATATAAATAACTAACCCCACAACCGCTTGATAAACAAGTCCA
TGCGCACGTTGATCTTGGCCTGGCCCACCGCCCACGGGTGCTGGA
Found at i:25295 original size:10 final size:10
Alignment explanation
Indices: 25263--25296 Score: 50
Period size: 10 Copynumber: 3.4 Consensus size: 10
25253 CGGAGGCGGC
*
25263 GGGGCCGCGA
1 GGGGACGCGA
*
25273 GGAGACGCGA
1 GGGGACGCGA
25283 GGGGACGCGA
1 GGGGACGCGA
25293 GGGG
1 GGGG
25297 CTTACGTGTT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
10 21 1.00
ACGTcount: A:0.18, C:0.21, G:0.62, T:0.00
Consensus pattern (10 bp):
GGGGACGCGA
Left flanking sequence: Indices 24763 -- 25262
GCACCGGCTCCTCGTCGTCCCCGGGCTTGCCCACCAAATTGAAGTCGATCGGAGGCGGTTTGCGC
CTAGGAGCGGGTGCGCTGCCAGCAGCCACGGGGATCTGGGGAGGACCGGCCTCGAGCAGCACCTT
GAGCGGCGCCCGCAGGCCGCCCACGGGCTTGGGTATGTTGAACGACATCCGTGATAGCTCGACGA
AAAAACTCGCTCGTAACTGCTATGCGCGGGCCAGATCGTGCAGAGCTGAGGCTACGCCGTGTGAG
ATGAGGTGGGGGCGCGTGGGGGAACACGGGGGTGGGAGTGGCACGGAGAGGCGTTCGGGAGGCGG
GACCGGTGCTCGGTGGGTTTGCGACGGTGGTGCCTTTGTGGTTTACTGGGGGATGGGCTGCTCGG
TTGTAGGCGCACTGGAGCGCGGTAACGGATTAGTAAGGAGGCAGTGCTCGGTGCGAGGCAGCAGA
CGAGAGTGGGTGAGAGGAGGCGGTCGGTGATGGAGCGGAGGCGGC
Right flanking sequence: Indices 25297 -- 25796
CTTACGTGTTCGTATACGCCGAGGCGGTCGATGTCGGACGCGACACCGACATTGGACACGATCGA
GGTGGAGGGGTAACGTGGGTAGACAGGAGTGTGGGGTTTGGAGTAAAGGGGTGGGATACGGTGAT
ACCACCGGATATGATGTTACCACCGGATGTTGTGGCCGGATTGGGTGTTTACTACTACGTGCTCG
GAAAGTGGTTGTTGTAGCTTTTACTGGGGGTATTGGTAGCCAAGGCTAACAACCGTGGACATGGT
GATAGCCAGCGCACTACGAATAGGTCATTCTCAAGAACACCAGCCAGGTCTGCAATGTGAATAGG
CTCTATTCGTAAGAACCAAAACTAGCACTAGAATACCAGCCAGGTCTGCAACACGAACAGGCTCC
ATTTTCAAGACCAGAACTAGCACTAAAACTCTAAACCTTGTATTTCCAACCAGCACTGGACACTT
CCCACACAGGCCACTGTTTACAGCCCAGCAATGGTTTTTACCTCC
Found at i:26090 original size:13 final size:13
Alignment explanation
Indices: 26072--26109 Score: 76
Period size: 13 Copynumber: 2.9 Consensus size: 13
26062 AGCCTCATTC
26072 TCCACCCAACCAG
1 TCCACCCAACCAG
26085 TCCACCCAACCAG
1 TCCACCCAACCAG
26098 TCCACCCAACCA
1 TCCACCCAACCA
26110 ACCTAGTCTG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.32, C:0.55, G:0.05, T:0.08
Consensus pattern (13 bp):
TCCACCCAACCAG
Left flanking sequence: Indices 25572 -- 26071
ACGAATAGGTCATTCTCAAGAACACCAGCCAGGTCTGCAATGTGAATAGGCTCTATTCGTAAGAA
CCAAAACTAGCACTAGAATACCAGCCAGGTCTGCAACACGAACAGGCTCCATTTTCAAGACCAGA
ACTAGCACTAAAACTCTAAACCTTGTATTTCCAACCAGCACTGGACACTTCCCACACAGGCCACT
GTTTACAGCCCAGCAATGGTTTTTACCTCCCCACGCCATGCCTCGTATCTCCACCATCATCTCTG
GATACTATTTACCAAGCACTGTTTCTCTAGCCCGCCACCAGTAGACATTACCTATCCGAGGCCCT
TTTCTCCAACCCCACAGCTGGACAATAATTACCCACACAGGGTTTCGTTTCTCCAGCCCAGAATT
GGACACTATATAACCACTACTAGACTCTTAGCCAGCACCACTAGTAACTGCCCACTCTAGACTCC
TCTTCCAGCACCATCACTAGATACTACCCACACCAAGCCTCATTC
Right flanking sequence: Indices 26110 -- 26609
ACCTAGTCTGACCTTCACCTCCACAGTAATCCACTACTTTCCCAAAGTGTCCGTACTCCACCGCA
CCACATCCTTACATTACCTTTATTCATGACTGTCTAGTTCTTCTTCGCCCGCTTCGCCGCAGGCT
TCTTGGCCCCGCCGGCCGCGGCCCGCTTCTTGGGCCGCTTCACCTCCTTGATCAACTTGTCCTTC
TTGGCGTCGATCCCGTCCTCCTCCTTCTCGTCGTCCTTGTCATCGTCCTTGGCGGTGTCGTCCTC
CACCACCCCGTCGTAGTCCACGCTCTGCTTCTTGGCCGTCCCCAACGTCGAGTTGCCCGTCTTGT
AGATCGCCGTCGGGTGGGTGGCCCCGTTGTACTTGCGGGTGAACGCCAGCTTCGTCTTGGTGGGC
ACCTGCTTCAAGATGGGCTCGCCGCGCATCGGACCCACCCCAAAGTCCACCACGTTGTCAAAGTC
GTCCCGGGTCATGTAGTAGGTGTCCATGAACTCGATCACCGCGTC
Found at i:30935 original size:19 final size:19
Alignment explanation
Indices: 30907--30944 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
30897 ACTACACCCA
30907 TATATAGAATAGATAGTGG
1 TATATAGAATAGATAGTGG
*
30926 TATATCGAATAGATAGTGG
1 TATATAGAATAGATAGTGG
30945 CAGTGTTGAG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.39, C:0.03, G:0.26, T:0.32
Consensus pattern (19 bp):
TATATAGAATAGATAGTGG
Left flanking sequence: Indices 30407 -- 30906
GCTCGTCCGACACAGCAATGCGCTCGCGCACCGTTTTCTCAAGCAAGGGGTTCGTTTGCTCGATC
TGTAACATGGGTGGTGGTGGTCAACGGATTCGCACTGGTAAGTAGGTGCGGGAAGGGCTCATAAT
GGTATGTGGGTGTGAGAGGTGGAGAATTGGGGGATTGTGTGTGGATGTGGGTGAAGGTGGGTGTA
GTTGTGTGTGACTGGGTGTGGTTGGGTATTTTTGGATGGTGCGTGTGTTGTTTTTTAGATAGGGT
TGTTTTCTCTTTAGCTCGGTTCGTGGTACACTTTCCTATGGTGATCGCAACTCAGCCACTGAAAT
GCGAATAGGGGCGATAGGTGGTGAGGATGAAAATTGGGAAAGATGGTAAAGAAGATGGGAAAAGA
TGGGTGAAAGCTGGAATGTTGGAAGTGAAATAAGTTGTGGAGCTGGCAGTGCGGGTATCTTGACC
AATTGCGTAAATTAGTTAAATCAAAGGCTGCGTTGACTACACCCA
Right flanking sequence: Indices 30945 -- 31444
CAGTGTTGAGACCAACGAGGGTGTGGTTGGAGGTGTGGTTGACCGCCAACAGCACTATAGCCGCC
AAATGAAACCGTCTCCCCCTGTAAAGGCCACACACGTCACTGATTCCTGACTCGCTCTACAAAGT
TCCTATTGTCCTTACCTCTCATACATGCCTATACAGCCGTTGAGTCTCGTTTGACAGCATCGTCC
TCGGTCTTTTCCTGGGCATCCCTCATGTATTTCTCGTTGTAATAGTCCGCAGGCACCATCAGTCC
CCACACCACCACTTCCACAAGCGACGAACCCTGTATCCAGCGAAGACCGTCGGTACACCCACCAC
GGCACACAGGTCCAGCCGAAAACCAGACGAACCCGATAAAATACAACCCGAATAAAACAACGTCC
AGACACATGGGCCCGATCTTATGCTTAGTCGGCTCCAACCCGACGCGAATAGAGTGGAGCGCAAA
CCCGATCTGAATAAACCCAAGCACAATGGTGTAAATGACAACCCC
Found at i:31797 original size:26 final size:26
Alignment explanation
Indices: 31768--31847 Score: 115
Period size: 26 Copynumber: 3.1 Consensus size: 26
31758 TACGCAACTC
**
31768 TTGGCCTCATATCTCTACCCATGCTA
1 TTGGCCTCGCATCTCTACCCATGCTA
*
31794 TTGGCCTCGCATCTCTAACCATGCTA
1 TTGGCCTCGCATCTCTACCCATGCTA
* *
31820 TTGCCCTCGCATCTCTACCTATGCTA
1 TTGGCCTCGCATCTCTACCCATGCTA
31846 TT
1 TT
31848 ATTATTACAT
Statistics
Matches: 48, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 48 1.00
ACGTcount: A:0.17, C:0.35, G:0.12, T:0.35
Consensus pattern (26 bp):
TTGGCCTCGCATCTCTACCCATGCTA
Left flanking sequence: Indices 31268 -- 31767
ACGGCACACAGGTCCAGCCGAAAACCAGACGAACCCGATAAAATACAACCCGAATAAAACAACGT
CCAGACACATGGGCCCGATCTTATGCTTAGTCGGCTCCAACCCGACGCGAATAGAGTGGAGCGCA
AACCCGATCTGAATAAACCCAAGCACAATGGTGTAAATGACAACCCCGTCAAAGTTAGACATTCG
CTCGGCAATGGCTACTCCGATCCCTGCCAATACAAGTCCAAGCACCAAGCAAAAGGCTTTGAAGC
CAGCGATGAGGGAGCTCCATTTGGTGAGGGGTGGCATTTTGTGGCACCAGACGGACGCTGGACGG
GTCTTTAAGTATCATTCAGTAGCCTCAAACCCCCCAGCAACGCGAGGTGAGCAGGCGCACTCCAG
ACCGAGCCACTTGCTTGGAGTTGCAAATTTCCCAATCGGGACACCAAAAGGGAAATCGTAGACGC
TCCTAGATGGCATGTCCACTCACCCACAGGCCTACTACGCAACTC
Right flanking sequence: Indices 31848 -- 32347
ATTATTACATACCGTCGTTAGTGGTTGTGGTGGTGGTAGTAGATCTTGTTGCTGGCGTTGGCGTC
CACCTCGCGCAGCCACCCCGGGATGTCCTCGCCGTTGCCGCCCACGGGCCGCTCCAACACCACGT
TCTCCAACCCGAGCGCGTCGTTGAGCCACGGGTGGTTCACCATCCCGCCCGCGTCCGCGCGCATC
TCGGGCTGGATCTGCAACATCGGCATCAAAAAGTCGGCAATGTCGCGGGCGTCCTGCGGGTCAAA
CTTGTACTTCTCCACGAGCACGTCCTGCAAACCCCACGGCTTGAGCTTCGAGATGCGGTGCAAGT
CTCCCCGGGTGTTGAAAAAGTCGCGGGTGAACACCAGCTCCTTGAGCATGGGCCGCGGGAATGGG
CCAATCAACTCGACAATCTGCGCAAGGTGGTCGTCGTCCTTGGTGTAGGTTTTGCCGTCGCGCGG
GTCAAACAAGTAGTCCCCGGTCAACAACTCGAACGTGAGACAGGC
Found at i:42482 original size:32 final size:32
Alignment explanation
Indices: 42435--42529 Score: 147
Period size: 31 Copynumber: 3.0 Consensus size: 32
42425 GAGGGATCGT
* * *
42435 AAGGGTCAGCGTAAGGCTTTATACGGTATTTC
1 AAGGATCAGCCTAAGGCTTTATACCGTATTTC
42467 AAGGATCAGCCTAAGGCTTTATACCGTA-TTC
1 AAGGATCAGCCTAAGGCTTTATACCGTATTTC
*
42498 AAGGATCAGCCTAAGACTTTATACCGTATTTC
1 AAGGATCAGCCTAAGGCTTTATACCGTATTTC
42530 TGCAGAATCA
Statistics
Matches: 58, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
31 30 0.52
32 28 0.48
ACGTcount: A:0.28, C:0.20, G:0.21, T:0.31
Consensus pattern (32 bp):
AAGGATCAGCCTAAGGCTTTATACCGTATTTC
Left flanking sequence: Indices 41935 -- 42434
TTCGTCCTGCCTGACTGGCACTATATCCAGATTGCAAGCCTGGTGACAGTACTCGGACAAAAAGT
CGTTACGACACCTCTCGAAAAGCCGTGTGAAGTATCTCATCCTGAACTGATCATATTTGGTGAAG
GGTCGAGGCCGGCGGCCACCTCGCGCAAAGGGAAGATAGTCTTCATAAGCGTGTTTTCCCTTGAC
CAAATAGGCACACAACTTGGCCGTCATGTAATCTACGTGGTTGTCGGACCCAAAGCCGCGGCGAA
CACGAGAAGCCACCATGCGTTTGCGGTCGTGGGGAAACGGACTGAGCTCAATGGTGCCTTGTTTC
GGAATGAGGCGCTTTCGGGGAGGATACCGATCGAGCTCATGGGGGTGCTTTCGAGCATCGTTAAG
AACGCCCGGAATATGCGTACCACGGTAGTTCCATATGGACCGTATCACGGATTCGCCGTCACCAA
GGCTTCCCGGGGGTATGAAAGCAAGTTCCATAGGAGAGGGATCGT
Right flanking sequence: Indices 42530 -- 43029
TGCAGAATCAAGTCGTCGAGAACCCATACCCTGCAACTCCAAGGCACCTCCCTATCTTACCCTTT
CACAATTTGCAGCCATGTTGCAACCCACGCCTATATACAGGTATACACAATCTCCACAAAGCCCA
AGATATGCCCTCTCCGTAGCCTACGACCCACAAAGAAAGCGGTGGGGGGTCTGGGGGGCGCCGCC
TGCGGCCCCCCAGCTGGTACTTGTCTTTGTACGGTACTTGTCTCGTACGCTGATACTGGTCTTCG
TACGCTGGTACTTGTCATACCCATTATCATCTATCATTATGCTAGCTGCTCTTTATAAACTTTTG
GATCGGGTCCGTCGAGAGCGAGTACTCCTTGAACTGGAGCGCCGACTCGTCGGGCCCCACAAGGT
CGCGGATCTTTTTGTCGTTGGCAAACCACTTTTTGATCAAGTAGCCCATCTCCTTCTGCTGCAAA
TACGTGGTGAACCCGGGGTAGAGGTCAAACGCCGCGTCGGTCTCG
Found at i:47130 original size:14 final size:15
Alignment explanation
Indices: 47111--47143 Score: 59
Period size: 14 Copynumber: 2.3 Consensus size: 15
47101 AGCGGGGCGT
47111 TGGTGGTGGTT-CGG
1 TGGTGGTGGTTGCGG
47125 TGGTGGTGGTTGCGG
1 TGGTGGTGGTTGCGG
47140 TGGT
1 TGGT
47144 TCGCGTCAGA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 11 0.61
15 7 0.39
ACGTcount: A:0.00, C:0.06, G:0.58, T:0.36
Consensus pattern (15 bp):
TGGTGGTGGTTGCGG
Left flanking sequence: Indices 46611 -- 47110
GTAGTGGTAGTTGTCGAGCGCCAGCTCCTGGGGATTGGTCTCGCCGAGGTAGATGTCGTTCGGGG
TGATCAGATCGATCTTGGTGAGGTCGGAGATGTACTTTTGCCCGAGCGCGAGCGGCGGCATCACG
GCAAACTCGGGCACCCGGATCTTGTAGTTGACCTGTTTGATGTTCAAGTCGAGCGGGTGCAAAAA
CCGCTTGTGGAGCGGCTGTTCGGCCAGCGCCGGCGCCGCGAGCCGGTCCAGGTGGAACTGGAGCA
GGTCCGACTGCACCGGCTTGATGTTTATCGTGGGTGCCACGTAGCGGTCGCTGCTGAGGAACGGC
ATCGGCGGTGTGTTTTTGTAGAAGCGATGTCGCAAGTTATGGTGGTGGGTTGTGTGCAGGCGTGG
ATGGGGGGCCGGTGGACGGCGGGGGAAACGGGGTCAGAGGGTGTGGTGGGCGGGCGGTGGGGGTG
CGAATGGGTTTGTGGGGGTGGTGGGGTGTGGGTGGAGCGGGGCGT
Right flanking sequence: Indices 47144 -- 47643
TCGCGTCAGATCAGGAGAAGGGAAGGGGAAAGAGTAGATGGTGTTGAGGGAAGGGACTGGGGTAG
AGTGATTGGGTTGGCAATTTGGGCGTAATGGTGTGTGGGATGGTGTGTGGAATAGTGTGTGGATT
GGTGGTGGATTGGTGGTGGATTGGTGGTGGAGTGGCGTGGGTGTGTTTGTGATCCTACCCGAAGA
TAGTCGGATAATTGTAAATAGAGTAGAAAAATAGTTGAGGTAAGGAGATCCAGGGACTGAGAAAG
AGGCTGGTCTGTGTGGATTGGTGATGGATTGGTGTGTGGATTGGTGGTGGATTGGTGGTGGATTG
GTGGGTGAGTGCGTGGGTATTTGTGATACTATGGTGGTACAATGTAGAGTAAATAGAGTAGAAAA
ATAGTTGGGTAGAGGAGGAGATCCAGACTAGGAAAAGAGACTGGTCTAGCCCGTGGGGCTCTACG
GGGCTACCTGTGACTACAGACCACCACGTTCGCCCACATTCGGAT
Found at i:47268 original size:14 final size:12
Alignment explanation
Indices: 47235--47304 Score: 74
Period size: 11 Copynumber: 6.1 Consensus size: 12
47225 ATTTGGGCGT
47235 AATGGTGTGTGG
1 AATGGTGTGTGG
*
47247 GATGGTGTGTGG
1 AATGGTGTGTGG
*
47259 AATAGTGTGTGG
1 AATGGTGTGTGG
*
47271 ATTGGTG-GTGG
1 AATGGTGTGTGG
*
47282 ATTGGTG-GTGG
1 AATGGTGTGTGG
*
47293 ATTGGTG-GTGG
1 AATGGTGTGTGG
47304 A
1 A
47305 GTGGCGTGGG
Statistics
Matches: 53, Mismatches: 5, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
11 27 0.51
12 26 0.49
ACGTcount: A:0.14, C:0.00, G:0.51, T:0.34
Consensus pattern (12 bp):
AATGGTGTGTGG
Left flanking sequence: Indices 46735 -- 47234
ATCACGGCAAACTCGGGCACCCGGATCTTGTAGTTGACCTGTTTGATGTTCAAGTCGAGCGGGTG
CAAAAACCGCTTGTGGAGCGGCTGTTCGGCCAGCGCCGGCGCCGCGAGCCGGTCCAGGTGGAACT
GGAGCAGGTCCGACTGCACCGGCTTGATGTTTATCGTGGGTGCCACGTAGCGGTCGCTGCTGAGG
AACGGCATCGGCGGTGTGTTTTTGTAGAAGCGATGTCGCAAGTTATGGTGGTGGGTTGTGTGCAG
GCGTGGATGGGGGGCCGGTGGACGGCGGGGGAAACGGGGTCAGAGGGTGTGGTGGGCGGGCGGTG
GGGGTGCGAATGGGTTTGTGGGGGTGGTGGGGTGTGGGTGGAGCGGGGCGTTGGTGGTGGTTCGG
TGGTGGTGGTTGCGGTGGTTCGCGTCAGATCAGGAGAAGGGAAGGGGAAAGAGTAGATGGTGTTG
AGGGAAGGGACTGGGGTAGAGTGATTGGGTTGGCAATTTGGGCGT
Right flanking sequence: Indices 47305 -- 47804
GTGGCGTGGGTGTGTTTGTGATCCTACCCGAAGATAGTCGGATAATTGTAAATAGAGTAGAAAAA
TAGTTGAGGTAAGGAGATCCAGGGACTGAGAAAGAGGCTGGTCTGTGTGGATTGGTGATGGATTG
GTGTGTGGATTGGTGGTGGATTGGTGGTGGATTGGTGGGTGAGTGCGTGGGTATTTGTGATACTA
TGGTGGTACAATGTAGAGTAAATAGAGTAGAAAAATAGTTGGGTAGAGGAGGAGATCCAGACTAG
GAAAAGAGACTGGTCTAGCCCGTGGGGCTCTACGGGGCTACCTGTGACTACAGACCACCACGTTC
GCCCACATTCGGATCAGTGGTGGGCTCCTTGGCGCGCGTTGGACACCCCAGACGCGCTATACCTT
CCCGGAGGAGGGAAGTGGAATGGAGCACCGTGATGTACTGAAGATCTAGAACTGCCCGCTGGGAA
CGTCTGGAAGGACGTTTGGCGGAAGACACAGCCCGAAGGGTTGTA
Found at i:47283 original size:11 final size:11
Alignment explanation
Indices: 47267--47304 Score: 76
Period size: 11 Copynumber: 3.5 Consensus size: 11
47257 GGAATAGTGT
47267 GTGGATTGGTG
1 GTGGATTGGTG
47278 GTGGATTGGTG
1 GTGGATTGGTG
47289 GTGGATTGGTG
1 GTGGATTGGTG
47300 GTGGA
1 GTGGA
47305 GTGGCGTGGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 27 1.00
ACGTcount: A:0.11, C:0.00, G:0.55, T:0.34
Consensus pattern (11 bp):
GTGGATTGGTG
Left flanking sequence: Indices 46767 -- 47266
GTTGACCTGTTTGATGTTCAAGTCGAGCGGGTGCAAAAACCGCTTGTGGAGCGGCTGTTCGGCCA
GCGCCGGCGCCGCGAGCCGGTCCAGGTGGAACTGGAGCAGGTCCGACTGCACCGGCTTGATGTTT
ATCGTGGGTGCCACGTAGCGGTCGCTGCTGAGGAACGGCATCGGCGGTGTGTTTTTGTAGAAGCG
ATGTCGCAAGTTATGGTGGTGGGTTGTGTGCAGGCGTGGATGGGGGGCCGGTGGACGGCGGGGGA
AACGGGGTCAGAGGGTGTGGTGGGCGGGCGGTGGGGGTGCGAATGGGTTTGTGGGGGTGGTGGGG
TGTGGGTGGAGCGGGGCGTTGGTGGTGGTTCGGTGGTGGTGGTTGCGGTGGTTCGCGTCAGATCA
GGAGAAGGGAAGGGGAAAGAGTAGATGGTGTTGAGGGAAGGGACTGGGGTAGAGTGATTGGGTTG
GCAATTTGGGCGTAATGGTGTGTGGGATGGTGTGTGGAATAGTGT
Right flanking sequence: Indices 47305 -- 47804
GTGGCGTGGGTGTGTTTGTGATCCTACCCGAAGATAGTCGGATAATTGTAAATAGAGTAGAAAAA
TAGTTGAGGTAAGGAGATCCAGGGACTGAGAAAGAGGCTGGTCTGTGTGGATTGGTGATGGATTG
GTGTGTGGATTGGTGGTGGATTGGTGGTGGATTGGTGGGTGAGTGCGTGGGTATTTGTGATACTA
TGGTGGTACAATGTAGAGTAAATAGAGTAGAAAAATAGTTGGGTAGAGGAGGAGATCCAGACTAG
GAAAAGAGACTGGTCTAGCCCGTGGGGCTCTACGGGGCTACCTGTGACTACAGACCACCACGTTC
GCCCACATTCGGATCAGTGGTGGGCTCCTTGGCGCGCGTTGGACACCCCAGACGCGCTATACCTT
CCCGGAGGAGGGAAGTGGAATGGAGCACCGTGATGTACTGAAGATCTAGAACTGCCCGCTGGGAA
CGTCTGGAAGGACGTTTGGCGGAAGACACAGCCCGAAGGGTTGTA
Found at i:47295 original size:22 final size:23
Alignment explanation
Indices: 47239--47304 Score: 82
Period size: 22 Copynumber: 2.9 Consensus size: 23
47229 GGGCGTAATG
47239 GTGTGTGGGA-TGGTGTGTGGAATA
1 GTGTGT-GGATTGGTG-GTGGAATA
* *
47263 GTGTGTGGATTGGTGGTGGATTG
1 GTGTGTGGATTGGTGGTGGAATA
47286 GTG-GTGGATTGGTGGTGGA
1 GTGTGTGGATTGGTGGTGGA
47305 GTGGCGTGGG
Statistics
Matches: 39, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
22 16 0.41
23 12 0.31
24 11 0.28
ACGTcount: A:0.12, C:0.00, G:0.53, T:0.35
Consensus pattern (23 bp):
GTGTGTGGATTGGTGGTGGAATA
Left flanking sequence: Indices 46739 -- 47238
CGGCAAACTCGGGCACCCGGATCTTGTAGTTGACCTGTTTGATGTTCAAGTCGAGCGGGTGCAAA
AACCGCTTGTGGAGCGGCTGTTCGGCCAGCGCCGGCGCCGCGAGCCGGTCCAGGTGGAACTGGAG
CAGGTCCGACTGCACCGGCTTGATGTTTATCGTGGGTGCCACGTAGCGGTCGCTGCTGAGGAACG
GCATCGGCGGTGTGTTTTTGTAGAAGCGATGTCGCAAGTTATGGTGGTGGGTTGTGTGCAGGCGT
GGATGGGGGGCCGGTGGACGGCGGGGGAAACGGGGTCAGAGGGTGTGGTGGGCGGGCGGTGGGGG
TGCGAATGGGTTTGTGGGGGTGGTGGGGTGTGGGTGGAGCGGGGCGTTGGTGGTGGTTCGGTGGT
GGTGGTTGCGGTGGTTCGCGTCAGATCAGGAGAAGGGAAGGGGAAAGAGTAGATGGTGTTGAGGG
AAGGGACTGGGGTAGAGTGATTGGGTTGGCAATTTGGGCGTAATG
Right flanking sequence: Indices 47305 -- 47804
GTGGCGTGGGTGTGTTTGTGATCCTACCCGAAGATAGTCGGATAATTGTAAATAGAGTAGAAAAA
TAGTTGAGGTAAGGAGATCCAGGGACTGAGAAAGAGGCTGGTCTGTGTGGATTGGTGATGGATTG
GTGTGTGGATTGGTGGTGGATTGGTGGTGGATTGGTGGGTGAGTGCGTGGGTATTTGTGATACTA
TGGTGGTACAATGTAGAGTAAATAGAGTAGAAAAATAGTTGGGTAGAGGAGGAGATCCAGACTAG
GAAAAGAGACTGGTCTAGCCCGTGGGGCTCTACGGGGCTACCTGTGACTACAGACCACCACGTTC
GCCCACATTCGGATCAGTGGTGGGCTCCTTGGCGCGCGTTGGACACCCCAGACGCGCTATACCTT
CCCGGAGGAGGGAAGTGGAATGGAGCACCGTGATGTACTGAAGATCTAGAACTGCCCGCTGGGAA
CGTCTGGAAGGACGTTTGGCGGAAGACACAGCCCGAAGGGTTGTA
Found at i:47433 original size:11 final size:11
Alignment explanation
Indices: 47416--47472 Score: 96
Period size: 11 Copynumber: 5.1 Consensus size: 11
47406 GCTGGTCTGT
47416 GTGGATTGGTG
1 GTGGATTGGTG
*
47427 ATGGATTGGTG
1 GTGGATTGGTG
47438 TGTGGATTGGTG
1 -GTGGATTGGTG
47450 GTGGATTGGTG
1 GTGGATTGGTG
47461 GTGGATTGGTG
1 GTGGATTGGTG
47472 G
1 G
47473 GTGAGTGCGT
Statistics
Matches: 43, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
11 33 0.77
12 10 0.23
ACGTcount: A:0.11, C:0.00, G:0.53, T:0.37
Consensus pattern (11 bp):
GTGGATTGGTG
Left flanking sequence: Indices 46916 -- 47415
GGTCGCTGCTGAGGAACGGCATCGGCGGTGTGTTTTTGTAGAAGCGATGTCGCAAGTTATGGTGG
TGGGTTGTGTGCAGGCGTGGATGGGGGGCCGGTGGACGGCGGGGGAAACGGGGTCAGAGGGTGTG
GTGGGCGGGCGGTGGGGGTGCGAATGGGTTTGTGGGGGTGGTGGGGTGTGGGTGGAGCGGGGCGT
TGGTGGTGGTTCGGTGGTGGTGGTTGCGGTGGTTCGCGTCAGATCAGGAGAAGGGAAGGGGAAAG
AGTAGATGGTGTTGAGGGAAGGGACTGGGGTAGAGTGATTGGGTTGGCAATTTGGGCGTAATGGT
GTGTGGGATGGTGTGTGGAATAGTGTGTGGATTGGTGGTGGATTGGTGGTGGATTGGTGGTGGAG
TGGCGTGGGTGTGTTTGTGATCCTACCCGAAGATAGTCGGATAATTGTAAATAGAGTAGAAAAAT
AGTTGAGGTAAGGAGATCCAGGGACTGAGAAAGAGGCTGGTCTGT
Right flanking sequence: Indices 47473 -- 47972
GTGAGTGCGTGGGTATTTGTGATACTATGGTGGTACAATGTAGAGTAAATAGAGTAGAAAAATAG
TTGGGTAGAGGAGGAGATCCAGACTAGGAAAAGAGACTGGTCTAGCCCGTGGGGCTCTACGGGGC
TACCTGTGACTACAGACCACCACGTTCGCCCACATTCGGATCAGTGGTGGGCTCCTTGGCGCGCG
TTGGACACCCCAGACGCGCTATACCTTCCCGGAGGAGGGAAGTGGAATGGAGCACCGTGATGTAC
TGAAGATCTAGAACTGCCCGCTGGGAACGTCTGGAAGGACGTTTGGCGGAAGACACAGCCCGAAG
GGTTGTAATACTAACTCCATGTGGCATGTTGCGATGTTGATACCGTTAGATCAAACTGATAATTG
GAGAGCTGCTAGAGTAGCCTTTTTCTGATTGCCACTTGTGACTAGTCTCTGCAATTCTCCCAATT
CACACCGCCACACCCCTATCCTGACACATTAGACCCGTAAAGCAT
Found at i:47475 original size:23 final size:23
Alignment explanation
Indices: 47413--47472 Score: 104
Period size: 23 Copynumber: 2.7 Consensus size: 23
47403 GAGGCTGGTC
*
47413 TGTGTGGATTGGTGATGGATTGG
1 TGTGTGGATTGGTGGTGGATTGG
47436 TGTGTGGATTGGTGGTGGATTGG
1 TGTGTGGATTGGTGGTGGATTGG
47459 TG-GTGGATTGGTGG
1 TGTGTGGATTGGTGG
47473 GTGAGTGCGT
Statistics
Matches: 36, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
22 12 0.33
23 24 0.67
ACGTcount: A:0.10, C:0.00, G:0.52, T:0.38
Consensus pattern (23 bp):
TGTGTGGATTGGTGGTGGATTGG
Left flanking sequence: Indices 46913 -- 47412
AGCGGTCGCTGCTGAGGAACGGCATCGGCGGTGTGTTTTTGTAGAAGCGATGTCGCAAGTTATGG
TGGTGGGTTGTGTGCAGGCGTGGATGGGGGGCCGGTGGACGGCGGGGGAAACGGGGTCAGAGGGT
GTGGTGGGCGGGCGGTGGGGGTGCGAATGGGTTTGTGGGGGTGGTGGGGTGTGGGTGGAGCGGGG
CGTTGGTGGTGGTTCGGTGGTGGTGGTTGCGGTGGTTCGCGTCAGATCAGGAGAAGGGAAGGGGA
AAGAGTAGATGGTGTTGAGGGAAGGGACTGGGGTAGAGTGATTGGGTTGGCAATTTGGGCGTAAT
GGTGTGTGGGATGGTGTGTGGAATAGTGTGTGGATTGGTGGTGGATTGGTGGTGGATTGGTGGTG
GAGTGGCGTGGGTGTGTTTGTGATCCTACCCGAAGATAGTCGGATAATTGTAAATAGAGTAGAAA
AATAGTTGAGGTAAGGAGATCCAGGGACTGAGAAAGAGGCTGGTC
Right flanking sequence: Indices 47473 -- 47972
GTGAGTGCGTGGGTATTTGTGATACTATGGTGGTACAATGTAGAGTAAATAGAGTAGAAAAATAG
TTGGGTAGAGGAGGAGATCCAGACTAGGAAAAGAGACTGGTCTAGCCCGTGGGGCTCTACGGGGC
TACCTGTGACTACAGACCACCACGTTCGCCCACATTCGGATCAGTGGTGGGCTCCTTGGCGCGCG
TTGGACACCCCAGACGCGCTATACCTTCCCGGAGGAGGGAAGTGGAATGGAGCACCGTGATGTAC
TGAAGATCTAGAACTGCCCGCTGGGAACGTCTGGAAGGACGTTTGGCGGAAGACACAGCCCGAAG
GGTTGTAATACTAACTCCATGTGGCATGTTGCGATGTTGATACCGTTAGATCAAACTGATAATTG
GAGAGCTGCTAGAGTAGCCTTTTTCTGATTGCCACTTGTGACTAGTCTCTGCAATTCTCCCAATT
CACACCGCCACACCCCTATCCTGACACATTAGACCCGTAAAGCAT
Found at i:48093 original size:9 final size:9
Alignment explanation
Indices: 48079--48128 Score: 100
Period size: 9 Copynumber: 5.6 Consensus size: 9
48069 ACCCTTCAAC
48079 GAAATATCT
1 GAAATATCT
48088 GAAATATCT
1 GAAATATCT
48097 GAAATATCT
1 GAAATATCT
48106 GAAATATCT
1 GAAATATCT
48115 GAAATATCT
1 GAAATATCT
48124 GAAAT
1 GAAAT
48129 TCATTTCACG
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 41 1.00
ACGTcount: A:0.46, C:0.10, G:0.12, T:0.32
Consensus pattern (9 bp):
GAAATATCT
Left flanking sequence: Indices 47579 -- 48078
CTAGCCCGTGGGGCTCTACGGGGCTACCTGTGACTACAGACCACCACGTTCGCCCACATTCGGAT
CAGTGGTGGGCTCCTTGGCGCGCGTTGGACACCCCAGACGCGCTATACCTTCCCGGAGGAGGGAA
GTGGAATGGAGCACCGTGATGTACTGAAGATCTAGAACTGCCCGCTGGGAACGTCTGGAAGGACG
TTTGGCGGAAGACACAGCCCGAAGGGTTGTAATACTAACTCCATGTGGCATGTTGCGATGTTGAT
ACCGTTAGATCAAACTGATAATTGGAGAGCTGCTAGAGTAGCCTTTTTCTGATTGCCACTTGTGA
CTAGTCTCTGCAATTCTCCCAATTCACACCGCCACACCCCTATCCTGACACATTAGACCCGTAAA
GCATTCAAACTGGCCCCACTTAGTTCTTTCGTTTCGATTCAGACATCCCCCACTCACCCTTCCAT
TTCTAATTCGAACCCCACCTCATTTCCCTGTGTACACCCTTCAAC
Right flanking sequence: Indices 48129 -- 48628
TCATTTCACGTAGACACCACCGGGCCCACCACCGGGCCCACCACTCGCAAACGCTTTTGTGGCTG
CGGGGACCATCTCCGCTAACGAGCAACAATAGTCGGCATTGCTCGCTGTAGTCGCGTATCTCCAC
AGGGTTGATCTCGGGGCTACTTTGTGGCGGTGATTCCGAAGGGGCCGTGGAGGCACAAACGCCGC
TGTGTCAACGGCTTTCGAGATCCGGTTTATGCATCTTACTAAGCATTACCTGATCAGAACAATAC
AAGGCATATGTGGGCTAGCCTTGCGATGCTCCACCAGCCAGCGTTGCTCAGCCAATGCTGCACCG
GCCCACCTTACCTCTGCAAGCAACCGATCTGTTCCTTGATGGCCCTTATGCACAGCCTAAACGAT
GTGCCCGCTTGTGAAAGCGGTGGTGGGGGACCACGGCAGCTGGTTGCGGTCGAAAAACAATACCG
GGCCATTGTTGTGGGATCTCGCTCTTTCTTTTGCACCCCGCCAAC
Found at i:48160 original size:12 final size:12
Alignment explanation
Indices: 48143--48172 Score: 60
Period size: 12 Copynumber: 2.5 Consensus size: 12
48133 TTCACGTAGA
48143 CACCACCGGGCC
1 CACCACCGGGCC
48155 CACCACCGGGCC
1 CACCACCGGGCC
48167 CACCAC
1 CACCAC
48173 TCGCAAACGC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.20, C:0.60, G:0.20, T:0.00
Consensus pattern (12 bp):
CACCACCGGGCC
Left flanking sequence: Indices 47643 -- 48142
TCAGTGGTGGGCTCCTTGGCGCGCGTTGGACACCCCAGACGCGCTATACCTTCCCGGAGGAGGGA
AGTGGAATGGAGCACCGTGATGTACTGAAGATCTAGAACTGCCCGCTGGGAACGTCTGGAAGGAC
GTTTGGCGGAAGACACAGCCCGAAGGGTTGTAATACTAACTCCATGTGGCATGTTGCGATGTTGA
TACCGTTAGATCAAACTGATAATTGGAGAGCTGCTAGAGTAGCCTTTTTCTGATTGCCACTTGTG
ACTAGTCTCTGCAATTCTCCCAATTCACACCGCCACACCCCTATCCTGACACATTAGACCCGTAA
AGCATTCAAACTGGCCCCACTTAGTTCTTTCGTTTCGATTCAGACATCCCCCACTCACCCTTCCA
TTTCTAATTCGAACCCCACCTCATTTCCCTGTGTACACCCTTCAACGAAATATCTGAAATATCTG
AAATATCTGAAATATCTGAAATATCTGAAATTCATTTCACGTAGA
Right flanking sequence: Indices 48173 -- 48672
TCGCAAACGCTTTTGTGGCTGCGGGGACCATCTCCGCTAACGAGCAACAATAGTCGGCATTGCTC
GCTGTAGTCGCGTATCTCCACAGGGTTGATCTCGGGGCTACTTTGTGGCGGTGATTCCGAAGGGG
CCGTGGAGGCACAAACGCCGCTGTGTCAACGGCTTTCGAGATCCGGTTTATGCATCTTACTAAGC
ATTACCTGATCAGAACAATACAAGGCATATGTGGGCTAGCCTTGCGATGCTCCACCAGCCAGCGT
TGCTCAGCCAATGCTGCACCGGCCCACCTTACCTCTGCAAGCAACCGATCTGTTCCTTGATGGCC
CTTATGCACAGCCTAAACGATGTGCCCGCTTGTGAAAGCGGTGGTGGGGGACCACGGCAGCTGGT
TGCGGTCGAAAAACAATACCGGGCCATTGTTGTGGGATCTCGCTCTTTCTTTTGCACCCCGCCAA
CAATAACCCCTGCTCGGGCCCGACGGGTGGTACCACCCACCCGCG
Found at i:52664 original size:21 final size:21
Alignment explanation
Indices: 52640--52697 Score: 98
Period size: 21 Copynumber: 2.8 Consensus size: 21
52630 CTCAGCCATG
52640 CGGAATACGTCCACTCCATAT
1 CGGAATACGTCCACTCCATAT
*
52661 CGGAATACGTCCGCTCCATAT
1 CGGAATACGTCCACTCCATAT
*
52682 CGGAATGCGTCCACTC
1 CGGAATACGTCCACTC
52698 TACGCTCCGA
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 34 1.00
ACGTcount: A:0.24, C:0.34, G:0.19, T:0.22
Consensus pattern (21 bp):
CGGAATACGTCCACTCCATAT
Left flanking sequence: Indices 52140 -- 52639
ACGGGTTGAAGCCCAAGCCCAACCAGTTGGTGCACCAGTTCTTGAAGCAGTACTTTGCGGTGTGT
GAGAGCGTGCGCGAAGACGGGCACTTTGACCACCAGAAGATCAGAGTGGTCACCTTGCTCTACCA
CCACCACTACGAGCGCATTGCCGACGTCAAGTGGGAGGAGATCACCAGCTTGAGCCAGTTGCAGG
GCGTGGTGATGTCGAGATTCACCCCCTACGACCGGTTCCCGGGCGAGCCCCGCGAGCCACGCGAG
AAAAAGGCCGTCCAGAAGTACGTCAAAGTGTCGGAGACCGAGGACGGGCTGGCGGTGTACCGCAA
GGACTTTGGCTTGAGCGCGAAGCCGAGCATGGCCTCGCTCAAGTCGATGCCGAGCATGAAGCTGG
TGCTGACGCTCAACGTGGACATCCACGGCAGCCCCACCATGGCCCCGGTGAACCAGCCGGTGTTG
GGCCAGCCGTTGGGGTTGTAAGAACTCCGAGCACGCTCAGCCATG
Right flanking sequence: Indices 52698 -- 53197
TACGCTCCGAGACCCCCCGTTTAAGCTTTTAAGCTTTTTAAACGAGCCGTTGTGAGCGCTGCTAT
TTGCAGCCAGGGGAACGCACCGTTACGAGCGGTGGCGCTGCCAGATCGGGGCCGTCAGCCTCGTC
GTGAGCAATCTCGTAAACCCCGAGTGTGGGCAACCATAAACCACCCGCCCAATCGCCGGTTGCTG
CTGCTTTGTTCCCGGGTCAGCCTTTGTAACCGTGGCACTCGTGACCCGTGCATATTGACACACGC
GAGTCCACGTGCACAGCCCCGACAGCCGTCCCCCGGACGATCCCTCCATAGAACGTGTACTAGAC
CCTCGCATACGCACCGAATAGACATAAGCTTTCCATAGAACGTTTCACCGCAGCATTCACATGGC
GCAGTCGCACCGGGCCCACGTCATTGTCGCGCCCGCTGCATGTGTGGTGCAGGTTAAATTAGCCG
GCCATCTCCCGCGATCTCAACCATGATCCGGGCCCGACGACTCTT
Found at i:56569 original size:34 final size:33
Alignment explanation
Indices: 56513--56618 Score: 142
Period size: 33 Copynumber: 3.2 Consensus size: 33
56503 GTGTCCTGTG
* *
56513 AAAATGCATTATTGTAAGCACCATGCTATTCTA
1 AAAATGCATTTTTGTAATCACCATGCTATTCTA
*
56546 AAAATGCAATTTTTGTAATCACCATGCTCTTCT-
1 AAAATGC-ATTTTTGTAATCACCATGCTATTCTA
*
56579 GAAATGCCATTTTTGTAATCACCATGCTATTCTA
1 AAAATG-CATTTTTGTAATCACCATGCTATTCTA
*
56613 TAAATG
1 AAAATG
56619 TCCTGACCCG
Statistics
Matches: 64, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
33 36 0.56
34 28 0.44
ACGTcount: A:0.33, C:0.19, G:0.11, T:0.37
Consensus pattern (33 bp):
AAAATGCATTTTTGTAATCACCATGCTATTCTA
Left flanking sequence: Indices 56013 -- 56512
CCATGCGGCGAGTACGAGCGGTGAAACGGAAGATGTTTCATCGCCGTGTGTCACACGACCGACTG
CGCGGACGGTGCCTCATCGCACTGAAATTTAGCCTAACTCGTATATGCACCAGTGACACCGAGAG
AAACGTGGTGAGGGATTATACGCTGCAGCTGCAACGAAGAGGTGGAGCTGCACACCCTCGGAAGT
CGCTGGGCACAGAGACGCACCGCTCGCTTAGATCGCCACAAAGCCGGGATGGCTGTAGTCATCGC
GATGGGTTGGAGGCTGCAGGGACTGGGAATGGTAGGCCCATTTATTTGCGGAAAAACTATAATCT
CAGTTGTTGTAACCGAAAAACTACGTGACCTATCAACTACGTGACACAACAGCTACGTGACCCTT
TTTTCAAGCTTTCTTCTTTTTCAACGCTTTGTTCATAATTATCTTCACATTTCAGATTGTGAAAC
ATTACTGTCGGAAACGCATTTATGCACTTTTCCGAGTGTCCTGTG
Right flanking sequence: Indices 56619 -- 57118
TCCTGACCCGAGGTCGTTGTCCGTCCCCTATATTCCCACCCAGAGAGCCTTCTCTAGGTAGTCTC
CCTTCGGCTTCTCCTTCAAAAAGCCCATCGTGATGAGCACGAAGCACGCGTGGATAAACCACGCG
TACGTCGTCTGGTCCCACTCGCCCTCGGGCACGTCAAACTCCCTGCGGTTGAGCAGATGGCGGAA
CGTGGTGTAAAAGTCGTAGATGTTGATGCTCACCGGAGCCTCCTTGTAGATCTTAAAAAGCCGTA
CCACCATGGGAGTAGCGTCGCCCAAGTAGAGCAGCGAGTCCTCGAGCGCCTGCTCCAACGTGCGA
CGCAACAGCGGCCGCACAAGCTGGAGCGAGAGGTTGGTAAAGTTCTCCACGAGCTCGGTGTGCTG
CCACACCGCACCTCCGTTCAAGGTGAAGATCTCGTGGAACAAGAGCTGGTCGATGGGCCGCACCA
GAAGCTTCAATGTGTCCACAAGCTCCCTGCCCGCGGGCAGCTCCA
Found at i:61582 original size:9 final size:9
Alignment explanation
Indices: 61568--61672 Score: 60
Period size: 9 Copynumber: 12.3 Consensus size: 9
61558 AGCTCAGCTC
61568 ACACAGGTT
1 ACACAGGTT
*
61577 ACACAGCTT
1 ACACAGGTT
*
61586 -CACAGTTT
1 ACACAGGTT
*
61594 ACACAGATT
1 ACACAGGTT
*
61603 ACACA-TTT
1 ACACAGGTT
* *
61611 TCACA-GCT
1 ACACAGGTT
*
61619 --ACA-GCT
1 ACACAGGTT
*
61625 CCACAGGTT
1 ACACAGGTT
*
61634 ACTCAGGTT
1 ACACAGGTT
*
61643 ACACAGGTC
1 ACACAGGTT
* *
61652 ACACTGATT
1 ACACAGGTT
61661 ACACAGGTT
1 ACACAGGTT
61670 ACA
1 ACA
61673 GCTTTACAGC
Statistics
Matches: 75, Mismatches: 17, Indels: 8
0.75 0.17 0.08
Matches are distributed among these distances:
6 6 0.08
8 17 0.23
9 52 0.69
ACGTcount: A:0.32, C:0.28, G:0.15, T:0.25
Consensus pattern (9 bp):
ACACAGGTT
Left flanking sequence: Indices 61068 -- 61567
GGCGAAGCAGAGCCATCGTGAGTTGGTCAGCCAGATGTTGGTTTAGAAAAGTGAAGAAAAAGAAG
AAGTAGAAGTGAGGAAGTCGGTTGACTAGAAAAAGTGAGGATCTGGTTTTATTGGCTAGTGGGGA
CGGAGAAAACAGCCCGATACGAGCAGCACCCGAGTTTCTCGTTTCTCGGAGGCGTGTTCCTCGGA
AGAGAGTGCTCCTATCGTGCCGGCTGCACTACCCACATATTCCCCCACGATTATTATTGTCTGAT
TGGCAAGGCCCTGGAACAGATCACGCAGTGTCGCATATCGAGCCGTATTGGGAACGAGGCGCCTT
GGCGTGTGGAGCTATGGGGTTGACCATGGATTACGAAAGGTCGGAAAGCGGACTCGTTTGGGTCT
AGTCACCGGAAGAAGGCCGGTTGTACGCTTTCGGGTCGGAGAAGGGTCTCTTTCGGGACTAGGCC
ACTGGAAAGAGTGTTGGTCGTATTCTTTCACGGGTAGCTCAGCTC
Right flanking sequence: Indices 61673 -- 62172
GCTTTACAGCTTCATAGCTACAGCTCCACAGCCTTCACAGCCTCACAGCTTCACAGCTCATACAT
TGTCACTTCATGTGAAGCCTATATCCACGGCTTACAAATCTCAGTACGTTCCTTTTCGCAGCCAA
ATTCGCACGCTACGCACACTATCCTTCTACCCACTACCACACTCTATACTTAACTCATTAAAACA
CGTCCAAAGGCTCACTGCTCTCACAAACGCCCCAACTGTCCATACCAGCATATTCCAGCTATACC
GCCTCCACACCAGTATACCCCAGCCAATCCCCGCTTCCTTCCTACCCTTTATTACTATTTACAGT
TCATAATGCATTCACAAGTCGTCGTCGTCCTCAAAGTCGGTGATCTTCCCCTCACGCTTGAGCTG
CTTGTACTTGCGCACAAGCTTGCGGTCCACCTTCTTCCGCGACCCCTGCTTGCGGAAGAACGACG
ACTTGTTGAGCGTCGCCACCAACTCACGGGCCTCGCGCACCCCCT
Found at i:61595 original size:17 final size:18
Alignment explanation
Indices: 61562--61618 Score: 64
Period size: 17 Copynumber: 3.3 Consensus size: 18
61552 ACGGGTAGCT
* *
61562 CAGCTCACACAGGTTACA
1 CAGCTTACACAGTTTACA
61580 CAGCTT-CACAGTTTACA
1 CAGCTTACACAGTTTACA
* *
61597 CAGATTACACA-TTTTCA
1 CAGCTTACACAGTTTACA
61614 CAGCT
1 CAGCT
61619 ACAGCTCCAC
Statistics
Matches: 33, Mismatches: 5, Indels: 3
0.80 0.12 0.07
Matches are distributed among these distances:
17 24 0.73
18 9 0.27
ACGTcount: A:0.32, C:0.30, G:0.12, T:0.26
Consensus pattern (18 bp):
CAGCTTACACAGTTTACA
Left flanking sequence: Indices 61062 -- 61561
GTTGTAGGCGAAGCAGAGCCATCGTGAGTTGGTCAGCCAGATGTTGGTTTAGAAAAGTGAAGAAA
AAGAAGAAGTAGAAGTGAGGAAGTCGGTTGACTAGAAAAAGTGAGGATCTGGTTTTATTGGCTAG
TGGGGACGGAGAAAACAGCCCGATACGAGCAGCACCCGAGTTTCTCGTTTCTCGGAGGCGTGTTC
CTCGGAAGAGAGTGCTCCTATCGTGCCGGCTGCACTACCCACATATTCCCCCACGATTATTATTG
TCTGATTGGCAAGGCCCTGGAACAGATCACGCAGTGTCGCATATCGAGCCGTATTGGGAACGAGG
CGCCTTGGCGTGTGGAGCTATGGGGTTGACCATGGATTACGAAAGGTCGGAAAGCGGACTCGTTT
GGGTCTAGTCACCGGAAGAAGGCCGGTTGTACGCTTTCGGGTCGGAGAAGGGTCTCTTTCGGGAC
TAGGCCACTGGAAAGAGTGTTGGTCGTATTCTTTCACGGGTAGCT
Right flanking sequence: Indices 61619 -- 62118
ACAGCTCCACAGGTTACTCAGGTTACACAGGTCACACTGATTACACAGGTTACAGCTTTACAGCT
TCATAGCTACAGCTCCACAGCCTTCACAGCCTCACAGCTTCACAGCTCATACATTGTCACTTCAT
GTGAAGCCTATATCCACGGCTTACAAATCTCAGTACGTTCCTTTTCGCAGCCAAATTCGCACGCT
ACGCACACTATCCTTCTACCCACTACCACACTCTATACTTAACTCATTAAAACACGTCCAAAGGC
TCACTGCTCTCACAAACGCCCCAACTGTCCATACCAGCATATTCCAGCTATACCGCCTCCACACC
AGTATACCCCAGCCAATCCCCGCTTCCTTCCTACCCTTTATTACTATTTACAGTTCATAATGCAT
TCACAAGTCGTCGTCGTCCTCAAAGTCGGTGATCTTCCCCTCACGCTTGAGCTGCTTGTACTTGC
GCACAAGCTTGCGGTCCACCTTCTTCCGCGACCCCTGCTTGCGGA
Found at i:70101 original size:27 final size:27
Alignment explanation
Indices: 70063--70115 Score: 88
Period size: 27 Copynumber: 2.0 Consensus size: 27
70053 GAGGTGACCT
70063 CCTGCTTCTCGTGGAAGGGCTCAACCC
1 CCTGCTTCTCGTGGAAGGGCTCAACCC
* *
70090 CCTGTTTCTCGTGGTAGGGCTCAACC
1 CCTGCTTCTCGTGGAAGGGCTCAACC
70116 ACTTTTTCTT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.13, C:0.34, G:0.26, T:0.26
Consensus pattern (27 bp):
CCTGCTTCTCGTGGAAGGGCTCAACCC
Left flanking sequence: Indices 69563 -- 70062
GCCAATGAGCACAATGCCCGCAATGTAACCGCCCGTGGCCGCATTCACCGTGGTGATCGAGGGAA
TCGAGGTAACAAAAAGAATCAACATACCACACACGTAGACAATACACAGGGCCATGATGGTCCAG
TACTTACCCCAGAAGGTGTCGGCCAACCAGCCGCCCAAAAGAGGGGTGACGTAGCACCAGAACTG
GAAAAAGTACGAAAGCGCAGTGGCACCGGTCTGGTCCAAACCCAACATACCAGCGGGGTGGTCCT
CGGGAGTGTTCTGCATGTAGTTCTGGAAGGGGGTGGACAACCCGTAGTAGGCAAACCGCTCAGCC
AACTCGACCACCGCCACAAGCCAACACCGCATGGGGATGTGCTCGGAAATGTGTCTCAAGTGCTT
GAGCTCGTAGGCAGTGGGAGTACCGCCCTCGGGAGTCTCGTACCCCTCGCCATCGAGGATCTGGT
CATCGCTCAGCGACGGCATCCCCGAGTCGATGGCAGAGGTGACCT
Right flanking sequence: Indices 70116 -- 70615
ACTTTTTCTTGCGACATAATGGCAATGGAGAACTACGGGGATGCTACAGGGGTTTTATACAGCCA
CAGGTGAAAATTATGCCCCACACCGCGTTATCGGAGTATCGGGACCCTATGCACCTGCTGCAGAT
GGGCCTACCCTAATTTTCTTGGGTGTGCGGCAATTTGTACAGAAGCGATGTTGCATTGGAGCCGT
GCGATGGCAGGGCACGCCAGAGACTGTCGGAGGAACCTGGTGTTTTTCCGGGGGGCTTGCCTGGG
CTTTGCTGGGGTGCGAGTTCCACCGCCACCGCGGGGCTTGGCACCCAAGCGACCGTTGTGCCAAG
AGGCCAAGACCTTGTGACACATTTTTAGTTTGAAAAGGAAAAAGCTTCCCGGTAGTGTGCAGGGG
TGCAGCACGGAACCCAGCCAGAGAATAATGCCGTCTGGGGCCGCCACGGGACGATCGCGGCTATC
GAAGGGCAGATGCCAGGGGAGCGTCGCGGGCGAGCCGCGGGGAAG
Found at i:71628 original size:65 final size:66
Alignment explanation
Indices: 71546--71683 Score: 174
Period size: 66 Copynumber: 2.1 Consensus size: 66
71536 TACGAGGATT
* *
71546 GTAGAAAACAGGCAGTG-AAAAT-TTGATCAGGTTGCTCT-GAAGGTTTACGAGGTGGCAATGGC
1 GTAGAAAACAAGCAGTGAAAAATCTTGACCA-GTTGCTCTCG-AGGTTTACGAGGTGGCAATGGC
71608 CCA
64 CCA
* * * * *
71611 GTAGAAAACAAGCAGTGAAAAATCTTGGCCAGTTGCTTTCGATGTTTACGAGGTGGTAATGGTCC
1 GTAGAAAACAAGCAGTGAAAAATCTTGACCAGTTGCTCTCGAGGTTTACGAGGTGGCAATGGCCC
71676 A
66 A
71677 GTAGAAA
1 GTAGAAA
71684 GCCCCGACAA
Statistics
Matches: 63, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
65 16 0.25
66 41 0.65
67 6 0.10
ACGTcount: A:0.32, C:0.14, G:0.29, T:0.25
Consensus pattern (66 bp):
GTAGAAAACAAGCAGTGAAAAATCTTGACCAGTTGCTCTCGAGGTTTACGAGGTGGCAATGGCCC
A
Left flanking sequence: Indices 71046 -- 71545
TGTAGCGAAAAAAGCAACGAGACAGGTGATAAAATTTATCCGAAACCAGGTGACCCCGGTTGCAC
CGTGAGGTGCTTTTTTCGAGGCTTTTGGCCCAGGGCAGGTAGATCCGAGGCCAGGGGAGCCAGGA
TACCAGGGCAGAGGGGAAACAGAGGGGAAACCTGGGGATGCAACGTTACGTACAACCAGTAGCTC
CGTGTGCGGCACTCCGCGGTGTTGCGGGGCATGGACCGGGGAATAAACCTCGGAATGTTCCAACG
GCAACCGATGGACTCAGGTTCGTAACCGCAGTGCCAAGAGTTGAAACCTGGGGTTCACGGCATTG
TGCGGTTTGGTTCGACTCGGCCGAGACGCACGCATTTGGCTACCGTTCTGGGAAGGCCGTTGAGA
GCGTTGGAGCCGATGAGTAAGCGATGGGCTCGTTGGTCGGTCTTTTGCGGGGAGATCAAGAATGT
AGCAGTGAAAATTTGATCAGGTTGCTCTGAATGTTTACGAGGATT
Right flanking sequence: Indices 71684 -- 72183
GCCCCGACAAAGCAATTGGTCCATTAGAGAATTTAGAGAATGGTGTGACCCAGGGTCAGTAGCCA
AGGGCTGAAGGCACCATTGGTGAATTTCTTGTCGTTGTTAGCCATGGTGGATTCTTACTCAGATC
AAAGGGTACGAAATAAGGGTACGGAAGTGACTGAGAGTGGACGAGAGTCCAATAGTCGGGAAACT
GTATTCTATACAGTTAAACAATAACGAGGAGTGAGTTTGTGTAACCTATTAAGGTTTAACTACTC
GTAGTTGGCTACCGTAATTGATTGAATACATAACCGGGTAAACGGGAGCCAACAGAAACCCAGAC
AGCAATGGTCCATAAATCCCGATAGCAATTGGCCTACAAAATCCTCACAAAGCAATTGACTGGCA
ATAATAAGGTGGCGTCTGAAACACCCTTAATCTACTCACTCTATAACCTACTCCACGGCCCAGTA
GCCCGGGTGCAAATAGTGGAACTTCTCCAACAACTCCTTCTTGAC
Found at i:73519 original size:2 final size:2
Alignment explanation
Indices: 73512--73558 Score: 67
Period size: 2 Copynumber: 23.5 Consensus size: 2
73502 TTACAAACGT
* * *
73512 AG AG AG AG AG AT AG AG AT AG AG AG AG AG AG AG AG AG AG AC AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
73554 AG AG A
1 AG AG A
73559 CTTGAGGGAA
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.51, C:0.02, G:0.43, T:0.04
Consensus pattern (2 bp):
AG
Left flanking sequence: Indices 73012 -- 73511
GCCGATGACGGCTAAGGTGACCGGGTGGTCAAAGGTGTGGGGCAATTGCAGCATGGACTGGGACA
GGCGGTGGACCGACATTTTATAGCGCAGCGGCCCTCGTGGGGTCGCAGTTGACAATGGCTGGTTG
CGAGCGCGGGCGCGGCGTGTGGGAAAGTGAATCAAACGGGACGGGGAAGCGGGCGGGACTGGGGG
GCGGAGGAGGGCTGGGAAGGGTGGTGGGGTGGCGGTGGGGACACAGCGAGCGTGCTGGGCGGAAA
ACAGGCGGAACGGGCGGGTCTGGGGGGGCATTCGGGCGTGGGTCGCTTAGATGACATCTGTCAGG
GCCTCACGTGAGGTGGTGAATAACGGTTGTGGAGCATGGTGGTGGGAAAGGTAGAGGGGTGAAGA
TAAGGAAGGGAGAGGATAGGAGAGGTGGAAGAAGATAGGGAAGAAGATAGAGTAGCTATAGAGTG
GGGTGATTGTAGGATCACCGGTAATCGTGTGACTATTACAAACGT
Right flanking sequence: Indices 73559 -- 74058
CTTGAGGGAATCAGACGAAATGCGATTTTTACATTTTTAGCACACTACTCTTCCATTGCGGATTC
CCTCCTTTTATACTCGTTACTCGCTTCTCATTTGCCGATCGAAATTGCCGATCACCTGTCAATTT
TTCACGCGTCGGTCTAGACTGGTCACGGAGCCCAATTGGACGCCAGGCTGGACCGCCATCCTGGC
CGCCTTCCTGGCCGTCCTCGGTAGAAAACACCCACAACCGCTCCCTCTCGTCTCTACGCAACCCT
CTTACCCCAATTACCCAATTCTAACCCCAGACCCGTCCCCTAGCCCGCGTCTGCATTGTTCTCCA
GGTTTCGTGACGTGATGGCCTGCACACAGCCACGGCCAACCGGGCTCTTCGTCGTCAAAATTGTG
GCAACCCGCTATCAGAGCCACGGTTTGGTCGCAGCAACACCGCCCTGGAGCCCACCCGTTGCTCC
CACCATCCACTCTTTCCCACGTCCCCGCATCGCCCGCTTAGTTTC
Found at i:76827 original size:16 final size:16
Alignment explanation
Indices: 76806--76884 Score: 54
Period size: 16 Copynumber: 5.1 Consensus size: 16
76796 GGACTGATTC
76806 TTGGCCATTAGTTTTG
1 TTGGCCATTAGTTTTG
*
76822 TTGGCCATTA-ATTTG
1 TTGGCCATTAGTTTTG
* * * *
76837 TCGGCCAGTATTTTTA
1 TTGGCCATTAGTTTTG
* * *
76853 TCGGCCATTTGCTTT-
1 TTGGCCATTAGTTTTG
* *
76868 ATCGCCATTAGTTTTG
1 TTGGCCATTAGTTTTG
76884 T
1 T
76885 CGCCATCACT
Statistics
Matches: 46, Mismatches: 15, Indels: 4
0.71 0.23 0.06
Matches are distributed among these distances:
15 22 0.48
16 24 0.52
ACGTcount: A:0.15, C:0.18, G:0.20, T:0.47
Consensus pattern (16 bp):
TTGGCCATTAGTTTTG
Left flanking sequence: Indices 76306 -- 76805
TGCTCACCACCCTTCTCAACGAGAAGTTCAAGGAGCTCGGCTCGGAGAACGCGCTCTCGGTCGAC
ATCTACTACACGGCCGAGCCGTGGTTGGGCGACCCGTTCAACCACGTGTACCAGGTGTTGGCGTC
GCAGATCGAGAAGCACTGGGGCACCACGCCGCTCTACATCCGTGAGGGTGGGTCGATTCCGCTGA
TCCGGTTCCTTGAGAAATGCTTCCAGGCGCCCGCAGCCCAGATTCCCTGCGGACAGGCGTCCGAC
AACGCCCACTTACAAAACGAAAAGCTTCGAATCGTCAATTTGCATAAACTCCGGGCGATCCTTAC
GGACACCTTCCAGGAGTTGAAGAAACCTGTGGTATAGTAATAAATTAATGCTAGGAGGTAGAAAT
GAATATCAGCTAATTACAACTAATTACAGGTGGTTCTACCAGGAACCTTTCAGCATGATAGATTC
GCTGATAGTTTAGTCCTTGTTGATAGTTAGTTCGTGGACTGATTC
Right flanking sequence: Indices 76885 -- 77384
CGCCATCACTTTGTCGCCATTAGTTGGGTGAGGCTATTGTTCGATGTCCGCTGACGTTCGATGTC
GTCTTGGCTGCAAATTGCCCCAGATATTTTGCGTAGACTCCTGCCCGAATGCACGGCGCCAGGAC
CCGCTGGCGATACGGCCATTGACCCGTTGGCGATACGACTATTGTTCTACGATAGATTCATACGG
TAAATAGACGAGACTGCATGTATAACATACGAGAGGACCCGTTTCAAACAGGACCCTCCGGAACC
CGTTTCAAACCGAGAATAATACGTCAACAGCCACCACTCCACCACTCCACCCTCTCGTTTCACGT
GGGAATGCCCGACAGACCCATGCAGACCATCGTGCTGTTTGTGTCAGATAAACCCCCAGGGGGAG
CGACGCTGCAAGCTGTTAGGCCCGATCGGGAAAGTTAACGAGCTGCGACACTGGGCTAATGCCTG
ATGAGCCGAGTCTAGAACCGAATGACGTGGCCGCTCGAAACAGCC
Found at i:76842 original size:15 final size:16
Alignment explanation
Indices: 76808--76907 Score: 57
Period size: 15 Copynumber: 6.6 Consensus size: 16
76798 ACTGATTCTT
* *
76808 GGCCATTAGTTTTGTT
1 GGCCATTAGATTTGTC
76824 GGCCATTA-ATTTGTC
1 GGCCATTAGATTTGTC
* ** *
76839 GGCCAGTATTTTTATC
1 GGCCATTAGATTTGTC
* * *
76855 GGCCATTTGCTTTATC
1 GGCCATTAGATTTGTC
*
76871 -GCCATTAGTTTTGTC
1 GGCCATTAGATTTGTC
* *
76886 -GCCATCA-CTTTGTC
1 GGCCATTAGATTTGTC
76900 -GCCATTAG
1 GGCCATTAG
76908 TTGGGTGAGG
Statistics
Matches: 67, Mismatches: 15, Indels: 5
0.77 0.17 0.06
Matches are distributed among these distances:
14 12 0.18
15 30 0.45
16 25 0.37
ACGTcount: A:0.16, C:0.22, G:0.20, T:0.42
Consensus pattern (16 bp):
GGCCATTAGATTTGTC
Left flanking sequence: Indices 76308 -- 76807
CTCACCACCCTTCTCAACGAGAAGTTCAAGGAGCTCGGCTCGGAGAACGCGCTCTCGGTCGACAT
CTACTACACGGCCGAGCCGTGGTTGGGCGACCCGTTCAACCACGTGTACCAGGTGTTGGCGTCGC
AGATCGAGAAGCACTGGGGCACCACGCCGCTCTACATCCGTGAGGGTGGGTCGATTCCGCTGATC
CGGTTCCTTGAGAAATGCTTCCAGGCGCCCGCAGCCCAGATTCCCTGCGGACAGGCGTCCGACAA
CGCCCACTTACAAAACGAAAAGCTTCGAATCGTCAATTTGCATAAACTCCGGGCGATCCTTACGG
ACACCTTCCAGGAGTTGAAGAAACCTGTGGTATAGTAATAAATTAATGCTAGGAGGTAGAAATGA
ATATCAGCTAATTACAACTAATTACAGGTGGTTCTACCAGGAACCTTTCAGCATGATAGATTCGC
TGATAGTTTAGTCCTTGTTGATAGTTAGTTCGTGGACTGATTCTT
Right flanking sequence: Indices 76908 -- 77407
TTGGGTGAGGCTATTGTTCGATGTCCGCTGACGTTCGATGTCGTCTTGGCTGCAAATTGCCCCAG
ATATTTTGCGTAGACTCCTGCCCGAATGCACGGCGCCAGGACCCGCTGGCGATACGGCCATTGAC
CCGTTGGCGATACGACTATTGTTCTACGATAGATTCATACGGTAAATAGACGAGACTGCATGTAT
AACATACGAGAGGACCCGTTTCAAACAGGACCCTCCGGAACCCGTTTCAAACCGAGAATAATACG
TCAACAGCCACCACTCCACCACTCCACCCTCTCGTTTCACGTGGGAATGCCCGACAGACCCATGC
AGACCATCGTGCTGTTTGTGTCAGATAAACCCCCAGGGGGAGCGACGCTGCAAGCTGTTAGGCCC
GATCGGGAAAGTTAACGAGCTGCGACACTGGGCTAATGCCTGATGAGCCGAGTCTAGAACCGAAT
GACGTGGCCGCTCGAAACAGCCAGCAAGCATGGTCCACATAGAAA
Found at i:76843 original size:31 final size:30
Alignment explanation
Indices: 76809--76909 Score: 96
Period size: 31 Copynumber: 3.3 Consensus size: 30
76799 CTGATTCTTG
*
76809 GCCATTAGTTTTGTTGGCCATTAATTTGTC
1 GCCATTAGTTTTGTTGGCCATTACTTTGTC
* * * * * *
76839 GGCCAGTATTTTTATCGGCCATTTGCTTTATC
1 -GCCATTAGTTTTGTTGGCCA-TTACTTTGTC
* *
76871 GCCATTAGTTTTG-TCGCCATCACTTTGTC
1 GCCATTAGTTTTGTTGGCCATTACTTTGTC
76900 GCCATTAGTT
1 GCCATTAGTT
76910 GGGTGAGGCT
Statistics
Matches: 54, Mismatches: 15, Indels: 4
0.74 0.21 0.05
Matches are distributed among these distances:
29 17 0.31
30 4 0.07
31 26 0.48
32 7 0.13
ACGTcount: A:0.16, C:0.22, G:0.19, T:0.44
Consensus pattern (30 bp):
GCCATTAGTTTTGTTGGCCATTACTTTGTC
Left flanking sequence: Indices 76309 -- 76808
TCACCACCCTTCTCAACGAGAAGTTCAAGGAGCTCGGCTCGGAGAACGCGCTCTCGGTCGACATC
TACTACACGGCCGAGCCGTGGTTGGGCGACCCGTTCAACCACGTGTACCAGGTGTTGGCGTCGCA
GATCGAGAAGCACTGGGGCACCACGCCGCTCTACATCCGTGAGGGTGGGTCGATTCCGCTGATCC
GGTTCCTTGAGAAATGCTTCCAGGCGCCCGCAGCCCAGATTCCCTGCGGACAGGCGTCCGACAAC
GCCCACTTACAAAACGAAAAGCTTCGAATCGTCAATTTGCATAAACTCCGGGCGATCCTTACGGA
CACCTTCCAGGAGTTGAAGAAACCTGTGGTATAGTAATAAATTAATGCTAGGAGGTAGAAATGAA
TATCAGCTAATTACAACTAATTACAGGTGGTTCTACCAGGAACCTTTCAGCATGATAGATTCGCT
GATAGTTTAGTCCTTGTTGATAGTTAGTTCGTGGACTGATTCTTG
Right flanking sequence: Indices 76910 -- 77409
GGGTGAGGCTATTGTTCGATGTCCGCTGACGTTCGATGTCGTCTTGGCTGCAAATTGCCCCAGAT
ATTTTGCGTAGACTCCTGCCCGAATGCACGGCGCCAGGACCCGCTGGCGATACGGCCATTGACCC
GTTGGCGATACGACTATTGTTCTACGATAGATTCATACGGTAAATAGACGAGACTGCATGTATAA
CATACGAGAGGACCCGTTTCAAACAGGACCCTCCGGAACCCGTTTCAAACCGAGAATAATACGTC
AACAGCCACCACTCCACCACTCCACCCTCTCGTTTCACGTGGGAATGCCCGACAGACCCATGCAG
ACCATCGTGCTGTTTGTGTCAGATAAACCCCCAGGGGGAGCGACGCTGCAAGCTGTTAGGCCCGA
TCGGGAAAGTTAACGAGCTGCGACACTGGGCTAATGCCTGATGAGCCGAGTCTAGAACCGAATGA
CGTGGCCGCTCGAAACAGCCAGCAAGCATGGTCCACATAGAAAAT
Found at i:77029 original size:24 final size:24
Alignment explanation
Indices: 77002--77051 Score: 59
Period size: 23 Copynumber: 2.1 Consensus size: 24
76992 GCCCGAATGC
77002 ACGGCGCCA-GGACCCGCTGGCGAT
1 ACGG-GCCATGGACCCGCTGGCGAT
* *
77026 AC-GGCCATTGACCCGTTGGCGAT
1 ACGGGCCATGGACCCGCTGGCGAT
77049 ACG
1 ACG
77052 ACTATTGTTC
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
22 4 0.18
23 16 0.73
24 2 0.09
ACGTcount: A:0.18, C:0.34, G:0.34, T:0.14
Consensus pattern (24 bp):
ACGGGCCATGGACCCGCTGGCGAT
Left flanking sequence: Indices 76502 -- 77001
CCGGTTCCTTGAGAAATGCTTCCAGGCGCCCGCAGCCCAGATTCCCTGCGGACAGGCGTCCGACA
ACGCCCACTTACAAAACGAAAAGCTTCGAATCGTCAATTTGCATAAACTCCGGGCGATCCTTACG
GACACCTTCCAGGAGTTGAAGAAACCTGTGGTATAGTAATAAATTAATGCTAGGAGGTAGAAATG
AATATCAGCTAATTACAACTAATTACAGGTGGTTCTACCAGGAACCTTTCAGCATGATAGATTCG
CTGATAGTTTAGTCCTTGTTGATAGTTAGTTCGTGGACTGATTCTTGGCCATTAGTTTTGTTGGC
CATTAATTTGTCGGCCAGTATTTTTATCGGCCATTTGCTTTATCGCCATTAGTTTTGTCGCCATC
ACTTTGTCGCCATTAGTTGGGTGAGGCTATTGTTCGATGTCCGCTGACGTTCGATGTCGTCTTGG
CTGCAAATTGCCCCAGATATTTTGCGTAGACTCCTGCCCGAATGC
Right flanking sequence: Indices 77052 -- 77551
ACTATTGTTCTACGATAGATTCATACGGTAAATAGACGAGACTGCATGTATAACATACGAGAGGA
CCCGTTTCAAACAGGACCCTCCGGAACCCGTTTCAAACCGAGAATAATACGTCAACAGCCACCAC
TCCACCACTCCACCCTCTCGTTTCACGTGGGAATGCCCGACAGACCCATGCAGACCATCGTGCTG
TTTGTGTCAGATAAACCCCCAGGGGGAGCGACGCTGCAAGCTGTTAGGCCCGATCGGGAAAGTTA
ACGAGCTGCGACACTGGGCTAATGCCTGATGAGCCGAGTCTAGAACCGAATGACGTGGCCGCTCG
AAACAGCCAGCAAGCATGGTCCACATAGAAAATAACTAAGCGGAACCACAATGATACGCCCCCTT
TTTCGCCCAAAATCCACAGTTAGGAATAATTACCAATTACAGGCTATTACCGCAATTACACTGAC
CCATTACCAATTACATGGCCAATTACCAATAACATGGGCCACTAC
Found at i:77058 original size:23 final size:23
Alignment explanation
Indices: 77012--77058 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 23
77002 ACGGCGCCAG
*
77012 GACCCGCTGGCGATACGGCCATT
1 GACCCGCTGGCGATACGACCATT
* *
77035 GACCCGTTGGCGATACGACTATT
1 GACCCGCTGGCGATACGACCATT
77058 G
1 G
77059 TTCTACGATA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.19, C:0.30, G:0.30, T:0.21
Consensus pattern (23 bp):
GACCCGCTGGCGATACGACCATT
Left flanking sequence: Indices 76512 -- 77011
GAGAAATGCTTCCAGGCGCCCGCAGCCCAGATTCCCTGCGGACAGGCGTCCGACAACGCCCACTT
ACAAAACGAAAAGCTTCGAATCGTCAATTTGCATAAACTCCGGGCGATCCTTACGGACACCTTCC
AGGAGTTGAAGAAACCTGTGGTATAGTAATAAATTAATGCTAGGAGGTAGAAATGAATATCAGCT
AATTACAACTAATTACAGGTGGTTCTACCAGGAACCTTTCAGCATGATAGATTCGCTGATAGTTT
AGTCCTTGTTGATAGTTAGTTCGTGGACTGATTCTTGGCCATTAGTTTTGTTGGCCATTAATTTG
TCGGCCAGTATTTTTATCGGCCATTTGCTTTATCGCCATTAGTTTTGTCGCCATCACTTTGTCGC
CATTAGTTGGGTGAGGCTATTGTTCGATGTCCGCTGACGTTCGATGTCGTCTTGGCTGCAAATTG
CCCCAGATATTTTGCGTAGACTCCTGCCCGAATGCACGGCGCCAG
Right flanking sequence: Indices 77059 -- 77558
TTCTACGATAGATTCATACGGTAAATAGACGAGACTGCATGTATAACATACGAGAGGACCCGTTT
CAAACAGGACCCTCCGGAACCCGTTTCAAACCGAGAATAATACGTCAACAGCCACCACTCCACCA
CTCCACCCTCTCGTTTCACGTGGGAATGCCCGACAGACCCATGCAGACCATCGTGCTGTTTGTGT
CAGATAAACCCCCAGGGGGAGCGACGCTGCAAGCTGTTAGGCCCGATCGGGAAAGTTAACGAGCT
GCGACACTGGGCTAATGCCTGATGAGCCGAGTCTAGAACCGAATGACGTGGCCGCTCGAAACAGC
CAGCAAGCATGGTCCACATAGAAAATAACTAAGCGGAACCACAATGATACGCCCCCTTTTTCGCC
CAAAATCCACAGTTAGGAATAATTACCAATTACAGGCTATTACCGCAATTACACTGACCCATTAC
CAATTACATGGCCAATTACCAATAACATGGGCCACTACCACAAAC
Found at i:77533 original size:19 final size:19
Alignment explanation
Indices: 77469--77543 Score: 73
Period size: 19 Copynumber: 3.9 Consensus size: 19
77459 AGTTAGGAAT
77469 AATTACCAATTACA-GG-C
1 AATTACCAATTACATGGCC
* *
77486 TATTACCGCAATTACACTGACC
1 AATTA-C-CAATTACA-TGGCC
*
77508 CATTACCAATTACATGGCC
1 AATTACCAATTACATGGCC
*
77527 AATTACCAATAACATGG
1 AATTACCAATTACATGG
77544 GCCACTACCA
Statistics
Matches: 47, Mismatches: 6, Indels: 8
0.77 0.10 0.13
Matches are distributed among these distances:
17 4 0.09
18 1 0.02
19 27 0.57
20 8 0.17
21 2 0.04
22 5 0.11
ACGTcount: A:0.37, C:0.27, G:0.11, T:0.25
Consensus pattern (19 bp):
AATTACCAATTACATGGCC
Left flanking sequence: Indices 76969 -- 77468
CCAGATATTTTGCGTAGACTCCTGCCCGAATGCACGGCGCCAGGACCCGCTGGCGATACGGCCAT
TGACCCGTTGGCGATACGACTATTGTTCTACGATAGATTCATACGGTAAATAGACGAGACTGCAT
GTATAACATACGAGAGGACCCGTTTCAAACAGGACCCTCCGGAACCCGTTTCAAACCGAGAATAA
TACGTCAACAGCCACCACTCCACCACTCCACCCTCTCGTTTCACGTGGGAATGCCCGACAGACCC
ATGCAGACCATCGTGCTGTTTGTGTCAGATAAACCCCCAGGGGGAGCGACGCTGCAAGCTGTTAG
GCCCGATCGGGAAAGTTAACGAGCTGCGACACTGGGCTAATGCCTGATGAGCCGAGTCTAGAACC
GAATGACGTGGCCGCTCGAAACAGCCAGCAAGCATGGTCCACATAGAAAATAACTAAGCGGAACC
ACAATGATACGCCCCCTTTTTCGCCCAAAATCCACAGTTAGGAAT
Right flanking sequence: Indices 77544 -- 78043
GCCACTACCACAAACACACGGCAATTACCACAATTACACAAGCCCATTACCGTAATTACACGGGC
CCATTACCACAATTACACGGCCACACGGCCAATTACCAAAATTAAACGGCCAATTACCGACTACA
CGGCAATTCCCAACTACACAGCCAATTACCATAATTACACAGGCACATTACCATAATTACTCAGG
CCTATTAACAATTACAAGGCCAATTCTACAGCCAATACACCTTCGTCATGCATTCATAAATCATA
AAATAATCACGTTGCCGTGGTCCGGGTTGGTGGTGACCCGGGTGTTGTAGCACACCCGCGAGTAC
TTTGGGTTGCGCAAGTAGTGGTTGATGTGCCGCAGGGTGTGAGCCCGGCTCTTCTGGTCGTCGTG
GTAGTCGTGCTTCAAGTCAAAGTCCTTGTCGTAGTGGAGCCACGCCGGCCGCTTGTCGAACCGCG
TCTGCTTGCTGTAGGTGTACTGGGCCTGGTTGCGAGCCGCGATGA
Found at i:77552 original size:19 final size:19
Alignment explanation
Indices: 77511--77553 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
77501 ACTGACCCAT
* *
77511 TACCAATTACATGGCCAAT
1 TACCAATAACATGGCCAAC
77530 TACCAATAACATGGGCC-AC
1 TACCAATAACAT-GGCCAAC
77549 TACCA
1 TACCA
77554 CAAACACACG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
19 17 0.81
20 4 0.19
ACGTcount: A:0.37, C:0.30, G:0.12, T:0.21
Consensus pattern (19 bp):
TACCAATAACATGGCCAAC
Left flanking sequence: Indices 77011 -- 77510
GGACCCGCTGGCGATACGGCCATTGACCCGTTGGCGATACGACTATTGTTCTACGATAGATTCAT
ACGGTAAATAGACGAGACTGCATGTATAACATACGAGAGGACCCGTTTCAAACAGGACCCTCCGG
AACCCGTTTCAAACCGAGAATAATACGTCAACAGCCACCACTCCACCACTCCACCCTCTCGTTTC
ACGTGGGAATGCCCGACAGACCCATGCAGACCATCGTGCTGTTTGTGTCAGATAAACCCCCAGGG
GGAGCGACGCTGCAAGCTGTTAGGCCCGATCGGGAAAGTTAACGAGCTGCGACACTGGGCTAATG
CCTGATGAGCCGAGTCTAGAACCGAATGACGTGGCCGCTCGAAACAGCCAGCAAGCATGGTCCAC
ATAGAAAATAACTAAGCGGAACCACAATGATACGCCCCCTTTTTCGCCCAAAATCCACAGTTAGG
AATAATTACCAATTACAGGCTATTACCGCAATTACACTGACCCAT
Right flanking sequence: Indices 77554 -- 78053
CAAACACACGGCAATTACCACAATTACACAAGCCCATTACCGTAATTACACGGGCCCATTACCAC
AATTACACGGCCACACGGCCAATTACCAAAATTAAACGGCCAATTACCGACTACACGGCAATTCC
CAACTACACAGCCAATTACCATAATTACACAGGCACATTACCATAATTACTCAGGCCTATTAACA
ATTACAAGGCCAATTCTACAGCCAATACACCTTCGTCATGCATTCATAAATCATAAAATAATCAC
GTTGCCGTGGTCCGGGTTGGTGGTGACCCGGGTGTTGTAGCACACCCGCGAGTACTTTGGGTTGC
GCAAGTAGTGGTTGATGTGCCGCAGGGTGTGAGCCCGGCTCTTCTGGTCGTCGTGGTAGTCGTGC
TTCAAGTCAAAGTCCTTGTCGTAGTGGAGCCACGCCGGCCGCTTGTCGAACCGCGTCTGCTTGCT
GTAGGTGTACTGGGCCTGGTTGCGAGCCGCGATGATCAGCATGAG
Found at i:77627 original size:22 final size:22
Alignment explanation
Indices: 77487--77628 Score: 93
Period size: 22 Copynumber: 6.8 Consensus size: 22
77477 ATTACAGGCT
* * *
77487 ATTACCGCAATTACACTGACCC
1 ATTACCACAATTACACGGGCCC
* *
77509 ATTA-C-CAATTACA-TGGCCA
1 ATTACCACAATTACACGGGCCC
* *
77528 ATTA-C-CAATAACATGGG-CC
1 ATTACCACAATTACACGGGCCC
* ** *
77547 ACTACCACAAACACAC-GG-CA
1 ATTACCACAATTACACGGGCCC
**
77567 ATTACCACAATTACACAAGCCC
1 ATTACCACAATTACACGGGCCC
**
77589 ATTACCGTAATTACACGGGCCC
1 ATTACCACAATTACACGGGCCC
77611 ATTACCACAATTACACGG
1 ATTACCACAATTACACGG
77629 CCACACGGCC
Statistics
Matches: 94, Mismatches: 21, Indels: 10
0.75 0.17 0.08
Matches are distributed among these distances:
19 20 0.21
20 27 0.29
21 8 0.09
22 39 0.41
ACGTcount: A:0.37, C:0.32, G:0.11, T:0.20
Consensus pattern (22 bp):
ATTACCACAATTACACGGGCCC
Left flanking sequence: Indices 76987 -- 77486
CTCCTGCCCGAATGCACGGCGCCAGGACCCGCTGGCGATACGGCCATTGACCCGTTGGCGATACG
ACTATTGTTCTACGATAGATTCATACGGTAAATAGACGAGACTGCATGTATAACATACGAGAGGA
CCCGTTTCAAACAGGACCCTCCGGAACCCGTTTCAAACCGAGAATAATACGTCAACAGCCACCAC
TCCACCACTCCACCCTCTCGTTTCACGTGGGAATGCCCGACAGACCCATGCAGACCATCGTGCTG
TTTGTGTCAGATAAACCCCCAGGGGGAGCGACGCTGCAAGCTGTTAGGCCCGATCGGGAAAGTTA
ACGAGCTGCGACACTGGGCTAATGCCTGATGAGCCGAGTCTAGAACCGAATGACGTGGCCGCTCG
AAACAGCCAGCAAGCATGGTCCACATAGAAAATAACTAAGCGGAACCACAATGATACGCCCCCTT
TTTCGCCCAAAATCCACAGTTAGGAATAATTACCAATTACAGGCT
Right flanking sequence: Indices 77629 -- 78128
CCACACGGCCAATTACCAAAATTAAACGGCCAATTACCGACTACACGGCAATTCCCAACTACACA
GCCAATTACCATAATTACACAGGCACATTACCATAATTACTCAGGCCTATTAACAATTACAAGGC
CAATTCTACAGCCAATACACCTTCGTCATGCATTCATAAATCATAAAATAATCACGTTGCCGTGG
TCCGGGTTGGTGGTGACCCGGGTGTTGTAGCACACCCGCGAGTACTTTGGGTTGCGCAAGTAGTG
GTTGATGTGCCGCAGGGTGTGAGCCCGGCTCTTCTGGTCGTCGTGGTAGTCGTGCTTCAAGTCAA
AGTCCTTGTCGTAGTGGAGCCACGCCGGCCGCTTGTCGAACCGCGTCTGCTTGCTGTAGGTGTAC
TGGGCCTGGTTGCGAGCCGCGATGATCAGCATGAGCTCGGCTGCGTCCTCGCGGTGGTGGTACGC
CAACTTGACCTGGTGGAACCGCTTGTCGTGCGCACGCACCAGGGG
Found at i:77643 original size:29 final size:30
Alignment explanation
Indices: 77601--77660 Score: 86
Period size: 29 Copynumber: 2.0 Consensus size: 30
77591 TACCGTAATT
* * *
77601 ACACGGGCCCATTACCACAATTACACGGCC
1 ACACGGGCCAATTACCAAAATTAAACGGCC
77631 ACAC-GGCCAATTACCAAAATTAAACGGCC
1 ACACGGGCCAATTACCAAAATTAAACGGCC
77660 A
1 A
77661 ATTACCGACT
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
29 23 0.85
30 4 0.15
ACGTcount: A:0.37, C:0.35, G:0.15, T:0.13
Consensus pattern (30 bp):
ACACGGGCCAATTACCAAAATTAAACGGCC
Left flanking sequence: Indices 77101 -- 77600
ATAACATACGAGAGGACCCGTTTCAAACAGGACCCTCCGGAACCCGTTTCAAACCGAGAATAATA
CGTCAACAGCCACCACTCCACCACTCCACCCTCTCGTTTCACGTGGGAATGCCCGACAGACCCAT
GCAGACCATCGTGCTGTTTGTGTCAGATAAACCCCCAGGGGGAGCGACGCTGCAAGCTGTTAGGC
CCGATCGGGAAAGTTAACGAGCTGCGACACTGGGCTAATGCCTGATGAGCCGAGTCTAGAACCGA
ATGACGTGGCCGCTCGAAACAGCCAGCAAGCATGGTCCACATAGAAAATAACTAAGCGGAACCAC
AATGATACGCCCCCTTTTTCGCCCAAAATCCACAGTTAGGAATAATTACCAATTACAGGCTATTA
CCGCAATTACACTGACCCATTACCAATTACATGGCCAATTACCAATAACATGGGCCACTACCACA
AACACACGGCAATTACCACAATTACACAAGCCCATTACCGTAATT
Right flanking sequence: Indices 77661 -- 78160
ATTACCGACTACACGGCAATTCCCAACTACACAGCCAATTACCATAATTACACAGGCACATTACC
ATAATTACTCAGGCCTATTAACAATTACAAGGCCAATTCTACAGCCAATACACCTTCGTCATGCA
TTCATAAATCATAAAATAATCACGTTGCCGTGGTCCGGGTTGGTGGTGACCCGGGTGTTGTAGCA
CACCCGCGAGTACTTTGGGTTGCGCAAGTAGTGGTTGATGTGCCGCAGGGTGTGAGCCCGGCTCT
TCTGGTCGTCGTGGTAGTCGTGCTTCAAGTCAAAGTCCTTGTCGTAGTGGAGCCACGCCGGCCGC
TTGTCGAACCGCGTCTGCTTGCTGTAGGTGTACTGGGCCTGGTTGCGAGCCGCGATGATCAGCAT
GAGCTCGGCTGCGTCCTCGCGGTGGTGGTACGCCAACTTGACCTGGTGGAACCGCTTGTCGTGCG
CACGCACCAGGGGGAACCAGTGGGCAAGCACCAACGGGTGGTGCT
Found at i:77689 original size:18 final size:19
Alignment explanation
Indices: 77631--77704 Score: 78
Period size: 18 Copynumber: 3.8 Consensus size: 19
77621 TTACACGGCC
*
77631 ACACGGCCAATTACCAAAATT
1 ACACGGCCAATTACC--AACT
* *
77652 AAACGGCCAATTACCGACT
1 ACACGGCCAATTACCAACT
*
77671 ACACGG-CAATTCCCAACT
1 ACACGGCCAATTACCAACT
*
77689 ACACAGCCAATTACCA
1 ACACGGCCAATTACCA
77705 TAATTACACA
Statistics
Matches: 44, Mismatches: 8, Indels: 4
0.79 0.14 0.07
Matches are distributed among these distances:
18 15 0.34
19 15 0.34
21 14 0.32
ACGTcount: A:0.39, C:0.34, G:0.11, T:0.16
Consensus pattern (19 bp):
ACACGGCCAATTACCAACT
Left flanking sequence: Indices 77131 -- 77630
GACCCTCCGGAACCCGTTTCAAACCGAGAATAATACGTCAACAGCCACCACTCCACCACTCCACC
CTCTCGTTTCACGTGGGAATGCCCGACAGACCCATGCAGACCATCGTGCTGTTTGTGTCAGATAA
ACCCCCAGGGGGAGCGACGCTGCAAGCTGTTAGGCCCGATCGGGAAAGTTAACGAGCTGCGACAC
TGGGCTAATGCCTGATGAGCCGAGTCTAGAACCGAATGACGTGGCCGCTCGAAACAGCCAGCAAG
CATGGTCCACATAGAAAATAACTAAGCGGAACCACAATGATACGCCCCCTTTTTCGCCCAAAATC
CACAGTTAGGAATAATTACCAATTACAGGCTATTACCGCAATTACACTGACCCATTACCAATTAC
ATGGCCAATTACCAATAACATGGGCCACTACCACAAACACACGGCAATTACCACAATTACACAAG
CCCATTACCGTAATTACACGGGCCCATTACCACAATTACACGGCC
Right flanking sequence: Indices 77705 -- 78204
TAATTACACAGGCACATTACCATAATTACTCAGGCCTATTAACAATTACAAGGCCAATTCTACAG
CCAATACACCTTCGTCATGCATTCATAAATCATAAAATAATCACGTTGCCGTGGTCCGGGTTGGT
GGTGACCCGGGTGTTGTAGCACACCCGCGAGTACTTTGGGTTGCGCAAGTAGTGGTTGATGTGCC
GCAGGGTGTGAGCCCGGCTCTTCTGGTCGTCGTGGTAGTCGTGCTTCAAGTCAAAGTCCTTGTCG
TAGTGGAGCCACGCCGGCCGCTTGTCGAACCGCGTCTGCTTGCTGTAGGTGTACTGGGCCTGGTT
GCGAGCCGCGATGATCAGCATGAGCTCGGCTGCGTCCTCGCGGTGGTGGTACGCCAACTTGACCT
GGTGGAACCGCTTGTCGTGCGCACGCACCAGGGGGAACCAGTGGGCAAGCACCAACGGGTGGTGC
TGGTCGAAAATGAACACGTTATAGCGGTCGCGGGTCAGCTGGAGC
Found at i:77745 original size:22 final size:22
Alignment explanation
Indices: 77688--77739 Score: 79
Period size: 22 Copynumber: 2.4 Consensus size: 22
77678 AATTCCCAAC
*
77688 TACACAGCCA-ATTACCATAAT
1 TACACAGGCACATTACCATAAT
77709 TACACAGGCACATTACCATAAT
1 TACACAGGCACATTACCATAAT
*
77731 TACTCAGGC
1 TACACAGGC
77740 CTATTAACAA
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
21 9 0.32
22 19 0.68
ACGTcount: A:0.38, C:0.29, G:0.10, T:0.23
Consensus pattern (22 bp):
TACACAGGCACATTACCATAAT
Left flanking sequence: Indices 77188 -- 77687
ACTCCACCCTCTCGTTTCACGTGGGAATGCCCGACAGACCCATGCAGACCATCGTGCTGTTTGTG
TCAGATAAACCCCCAGGGGGAGCGACGCTGCAAGCTGTTAGGCCCGATCGGGAAAGTTAACGAGC
TGCGACACTGGGCTAATGCCTGATGAGCCGAGTCTAGAACCGAATGACGTGGCCGCTCGAAACAG
CCAGCAAGCATGGTCCACATAGAAAATAACTAAGCGGAACCACAATGATACGCCCCCTTTTTCGC
CCAAAATCCACAGTTAGGAATAATTACCAATTACAGGCTATTACCGCAATTACACTGACCCATTA
CCAATTACATGGCCAATTACCAATAACATGGGCCACTACCACAAACACACGGCAATTACCACAAT
TACACAAGCCCATTACCGTAATTACACGGGCCCATTACCACAATTACACGGCCACACGGCCAATT
ACCAAAATTAAACGGCCAATTACCGACTACACGGCAATTCCCAAC
Right flanking sequence: Indices 77740 -- 78239
CTATTAACAATTACAAGGCCAATTCTACAGCCAATACACCTTCGTCATGCATTCATAAATCATAA
AATAATCACGTTGCCGTGGTCCGGGTTGGTGGTGACCCGGGTGTTGTAGCACACCCGCGAGTACT
TTGGGTTGCGCAAGTAGTGGTTGATGTGCCGCAGGGTGTGAGCCCGGCTCTTCTGGTCGTCGTGG
TAGTCGTGCTTCAAGTCAAAGTCCTTGTCGTAGTGGAGCCACGCCGGCCGCTTGTCGAACCGCGT
CTGCTTGCTGTAGGTGTACTGGGCCTGGTTGCGAGCCGCGATGATCAGCATGAGCTCGGCTGCGT
CCTCGCGGTGGTGGTACGCCAACTTGACCTGGTGGAACCGCTTGTCGTGCGCACGCACCAGGGGG
AACCAGTGGGCAAGCACCAACGGGTGGTGCTGGTCGAAAATGAACACGTTATAGCGGTCGCGGGT
CAGCTGGAGCCCCAGGCTGTACATCGCGTAGTTGGCAAACTCGAG
Found at i:79145 original size:12 final size:12
Alignment explanation
Indices: 79130--79192 Score: 99
Period size: 12 Copynumber: 5.2 Consensus size: 12
79120 TCGGGCTTGG
*
79130 GGTGGGTAGGTT
1 GGTGGGTTGGTT
79142 GGTGGGTTGGTT
1 GGTGGGTTGGTT
*
79154 GGTGGGTTGGCT
1 GGTGGGTTGGTT
*
79166 GGTGGGTTGGGT
1 GGTGGGTTGGTT
79178 GGTGGGTTGGTT
1 GGTGGGTTGGTT
79190 GGT
1 GGT
79193 TGGTAGGGTG
Statistics
Matches: 47, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
12 47 1.00
ACGTcount: A:0.02, C:0.02, G:0.60, T:0.37
Consensus pattern (12 bp):
GGTGGGTTGGTT
Left flanking sequence: Indices 78630 -- 79129
GCGGTACTGGCGGAACTTCTCGTAGCTGAGTGCTCCCAACGTCTCGAGGTTGGCCAAGTGGGCAC
AGTGGCCACACGGGTTAGGAGCCCGTTGCATCAAGCACGACGAAAACGGAAAGAGAAGGTAGCGC
TTCAGTGGGTCAAACTCGACGTTGGCGGCCCAGATCTTGCCCACCAGCTTCAGCCCTGGCACAAT
GGGCCCCTTGAGCGGGGTGAAGTCCGTCTGGAAGTTTACCGCCGCCAATTTGACCTTGAAGATCG
CCTGGGGGATCTCCGGGTCCAACTCGAAGTCCCGGCGCATTTTCGGAGTTTCCCGGAGCAGGTGG
GACTTCGGGTAGTACACCCGTTTCACGGGGAGCTCGTTGACGGGCTCGCACAGCCGCTGCAGGCG
GTGCAGCAGTTCCAGGGTGTAGGAACATACCAGCAGCTGGGCCGAGGCGGCTGAGGCGGCCAATT
GCGGCAGCGGGGGCTTCGGGAAGTCAGCAATGGGGTCGGGCTTGG
Right flanking sequence: Indices 79193 -- 79692
TGGTAGGGTGATGGGTAGGGTGTTTTTGGTTAATAGAGGGTTTTGGTTTTAGTTCGTTCAATTCG
GGTTGGTCCAGTTCGGGCTGGCTCAGTTCGCACACTGGTTGGTTCAATTCGGGCTCGTCCAGGCT
CATTTTGGGCAGTGACGGGTTCTTCTCCTCATCCAGGCTCATTGGTTTAGGCAGTGCTGACTTTT
CCTTGTCCAGGCTCAATGACGTCAACTCAAGAGACTCCTTCGATTGGTCCTTTTCGCCCATCTCG
GTGTCTCTATCCTCAAGTAGTCCCTCCGCGTTCAACCGGCTCACCAACCTCATAGCCTCGCGAAG
CGCGTCCGGAGCCAGCCGGGGAACCTCGGGAGCCAACCGCGCGGGGTCGCGAGCGGGCTCGGCAA
ACCGCACCGTTTTCCGTCCCTGCGCCAACCGGATGTTACTGCGCAACTGGTGGTCGATATCGCCC
AGGTTATCCATCGCAGCCTCGGGCACAGGCAAAAACGACAGTTAT
Found at i:79153 original size:4 final size:4
Alignment explanation
Indices: 79138--79196 Score: 64
Period size: 4 Copynumber: 14.8 Consensus size: 4
79128 GGGGTGGGTA
* * * * * *
79138 GGTT GGTG GGTT GGTT GGTG GGTT GGCT GGTG GGTT GGGT GGTG GGTT
1 GGTT GGTT GGTT GGTT GGTT GGTT GGTT GGTT GGTT GGTT GGTT GGTT
79186 GGTT GGTT GGT
1 GGTT GGTT GGT
79197 AGGGTGATGG
Statistics
Matches: 43, Mismatches: 12, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
4 43 1.00
ACGTcount: A:0.00, C:0.02, G:0.59, T:0.39
Consensus pattern (4 bp):
GGTT
Left flanking sequence: Indices 78638 -- 79137
GGCGGAACTTCTCGTAGCTGAGTGCTCCCAACGTCTCGAGGTTGGCCAAGTGGGCACAGTGGCCA
CACGGGTTAGGAGCCCGTTGCATCAAGCACGACGAAAACGGAAAGAGAAGGTAGCGCTTCAGTGG
GTCAAACTCGACGTTGGCGGCCCAGATCTTGCCCACCAGCTTCAGCCCTGGCACAATGGGCCCCT
TGAGCGGGGTGAAGTCCGTCTGGAAGTTTACCGCCGCCAATTTGACCTTGAAGATCGCCTGGGGG
ATCTCCGGGTCCAACTCGAAGTCCCGGCGCATTTTCGGAGTTTCCCGGAGCAGGTGGGACTTCGG
GTAGTACACCCGTTTCACGGGGAGCTCGTTGACGGGCTCGCACAGCCGCTGCAGGCGGTGCAGCA
GTTCCAGGGTGTAGGAACATACCAGCAGCTGGGCCGAGGCGGCTGAGGCGGCCAATTGCGGCAGC
GGGGGCTTCGGGAAGTCAGCAATGGGGTCGGGCTTGGGGTGGGTA
Right flanking sequence: Indices 79197 -- 79696
AGGGTGATGGGTAGGGTGTTTTTGGTTAATAGAGGGTTTTGGTTTTAGTTCGTTCAATTCGGGTT
GGTCCAGTTCGGGCTGGCTCAGTTCGCACACTGGTTGGTTCAATTCGGGCTCGTCCAGGCTCATT
TTGGGCAGTGACGGGTTCTTCTCCTCATCCAGGCTCATTGGTTTAGGCAGTGCTGACTTTTCCTT
GTCCAGGCTCAATGACGTCAACTCAAGAGACTCCTTCGATTGGTCCTTTTCGCCCATCTCGGTGT
CTCTATCCTCAAGTAGTCCCTCCGCGTTCAACCGGCTCACCAACCTCATAGCCTCGCGAAGCGCG
TCCGGAGCCAGCCGGGGAACCTCGGGAGCCAACCGCGCGGGGTCGCGAGCGGGCTCGGCAAACCG
CACCGTTTTCCGTCCCTGCGCCAACCGGATGTTACTGCGCAACTGGTGGTCGATATCGCCCAGGT
TATCCATCGCAGCCTCGGGCACAGGCAAAAACGACAGTTATAAAC
Found at i:79157 original size:24 final size:24
Alignment explanation
Indices: 79130--79211 Score: 101
Period size: 24 Copynumber: 3.4 Consensus size: 24
79120 TCGGGCTTGG
*
79130 GGTGGGTAGGTTGGTGGGTTGGTT
1 GGTGGGTAGGTTGGTGGGTTGGGT
* *
79154 GGTGGGTTGGCTGGTGGGTTGGGT
1 GGTGGGTAGGTTGGTGGGTTGGGT
* * *
79178 GGTGGGTTGGTTGGTTGGTAGGGT
1 GGTGGGTAGGTTGGTGGGTTGGGT
*
79202 GATGGGTAGG
1 GGTGGGTAGG
79212 GTGTTTTTGG
Statistics
Matches: 50, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 50 1.00
ACGTcount: A:0.05, C:0.01, G:0.60, T:0.34
Consensus pattern (24 bp):
GGTGGGTAGGTTGGTGGGTTGGGT
Left flanking sequence: Indices 78630 -- 79129
GCGGTACTGGCGGAACTTCTCGTAGCTGAGTGCTCCCAACGTCTCGAGGTTGGCCAAGTGGGCAC
AGTGGCCACACGGGTTAGGAGCCCGTTGCATCAAGCACGACGAAAACGGAAAGAGAAGGTAGCGC
TTCAGTGGGTCAAACTCGACGTTGGCGGCCCAGATCTTGCCCACCAGCTTCAGCCCTGGCACAAT
GGGCCCCTTGAGCGGGGTGAAGTCCGTCTGGAAGTTTACCGCCGCCAATTTGACCTTGAAGATCG
CCTGGGGGATCTCCGGGTCCAACTCGAAGTCCCGGCGCATTTTCGGAGTTTCCCGGAGCAGGTGG
GACTTCGGGTAGTACACCCGTTTCACGGGGAGCTCGTTGACGGGCTCGCACAGCCGCTGCAGGCG
GTGCAGCAGTTCCAGGGTGTAGGAACATACCAGCAGCTGGGCCGAGGCGGCTGAGGCGGCCAATT
GCGGCAGCGGGGGCTTCGGGAAGTCAGCAATGGGGTCGGGCTTGG
Right flanking sequence: Indices 79212 -- 79711
GTGTTTTTGGTTAATAGAGGGTTTTGGTTTTAGTTCGTTCAATTCGGGTTGGTCCAGTTCGGGCT
GGCTCAGTTCGCACACTGGTTGGTTCAATTCGGGCTCGTCCAGGCTCATTTTGGGCAGTGACGGG
TTCTTCTCCTCATCCAGGCTCATTGGTTTAGGCAGTGCTGACTTTTCCTTGTCCAGGCTCAATGA
CGTCAACTCAAGAGACTCCTTCGATTGGTCCTTTTCGCCCATCTCGGTGTCTCTATCCTCAAGTA
GTCCCTCCGCGTTCAACCGGCTCACCAACCTCATAGCCTCGCGAAGCGCGTCCGGAGCCAGCCGG
GGAACCTCGGGAGCCAACCGCGCGGGGTCGCGAGCGGGCTCGGCAAACCGCACCGTTTTCCGTCC
CTGCGCCAACCGGATGTTACTGCGCAACTGGTGGTCGATATCGCCCAGGTTATCCATCGCAGCCT
CGGGCACAGGCAAAAACGACAGTTATAAACGAGAAAAAAAACCTC
Found at i:79208 original size:36 final size:36
Alignment explanation
Indices: 79132--79214 Score: 112
Period size: 36 Copynumber: 2.3 Consensus size: 36
79122 GGGCTTGGGG
* * *
79132 TGGGTAGGTTGGTGGGTTGGTTGGTGGGTTGGCTGG
1 TGGGTAGGGTGGTGGGTTGGTTGGTGGGTAGGCTGA
* * *
79168 TGGGTTGGGTGGTGGGTTGGTTGGTTGGTAGGGTGA
1 TGGGTAGGGTGGTGGGTTGGTTGGTGGGTAGGCTGA
79204 TGGGTAGGGTG
1 TGGGTAGGGTG
79215 TTTTTGGTTA
Statistics
Matches: 40, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
36 40 1.00
ACGTcount: A:0.05, C:0.01, G:0.59, T:0.35
Consensus pattern (36 bp):
TGGGTAGGGTGGTGGGTTGGTTGGTGGGTAGGCTGA
Left flanking sequence: Indices 78632 -- 79131
GGTACTGGCGGAACTTCTCGTAGCTGAGTGCTCCCAACGTCTCGAGGTTGGCCAAGTGGGCACAG
TGGCCACACGGGTTAGGAGCCCGTTGCATCAAGCACGACGAAAACGGAAAGAGAAGGTAGCGCTT
CAGTGGGTCAAACTCGACGTTGGCGGCCCAGATCTTGCCCACCAGCTTCAGCCCTGGCACAATGG
GCCCCTTGAGCGGGGTGAAGTCCGTCTGGAAGTTTACCGCCGCCAATTTGACCTTGAAGATCGCC
TGGGGGATCTCCGGGTCCAACTCGAAGTCCCGGCGCATTTTCGGAGTTTCCCGGAGCAGGTGGGA
CTTCGGGTAGTACACCCGTTTCACGGGGAGCTCGTTGACGGGCTCGCACAGCCGCTGCAGGCGGT
GCAGCAGTTCCAGGGTGTAGGAACATACCAGCAGCTGGGCCGAGGCGGCTGAGGCGGCCAATTGC
GGCAGCGGGGGCTTCGGGAAGTCAGCAATGGGGTCGGGCTTGGGG
Right flanking sequence: Indices 79215 -- 79714
TTTTTGGTTAATAGAGGGTTTTGGTTTTAGTTCGTTCAATTCGGGTTGGTCCAGTTCGGGCTGGC
TCAGTTCGCACACTGGTTGGTTCAATTCGGGCTCGTCCAGGCTCATTTTGGGCAGTGACGGGTTC
TTCTCCTCATCCAGGCTCATTGGTTTAGGCAGTGCTGACTTTTCCTTGTCCAGGCTCAATGACGT
CAACTCAAGAGACTCCTTCGATTGGTCCTTTTCGCCCATCTCGGTGTCTCTATCCTCAAGTAGTC
CCTCCGCGTTCAACCGGCTCACCAACCTCATAGCCTCGCGAAGCGCGTCCGGAGCCAGCCGGGGA
ACCTCGGGAGCCAACCGCGCGGGGTCGCGAGCGGGCTCGGCAAACCGCACCGTTTTCCGTCCCTG
CGCCAACCGGATGTTACTGCGCAACTGGTGGTCGATATCGCCCAGGTTATCCATCGCAGCCTCGG
GCACAGGCAAAAACGACAGTTATAAACGAGAAAAAAAACCTCATG
Found at i:80349 original size:17 final size:18
Alignment explanation
Indices: 80300--80350 Score: 58
Period size: 17 Copynumber: 3.1 Consensus size: 18
80290 AGGGGCGTGG
*
80300 GCGGGCGT-AGCACGGTT
1 GCGGGCGTGGGCACGGTT
80317 GC-GG-GTGGG-ACGGTT
1 GCGGGCGTGGGCACGGTT
80332 GCGGGCGTGGGCAC-GTT
1 GCGGGCGTGGGCACGGTT
80349 GC
1 GC
80351 TTTGGGCGTA
Statistics
Matches: 29, Mismatches: 1, Indels: 8
0.76 0.03 0.21
Matches are distributed among these distances:
15 10 0.34
16 5 0.17
17 12 0.41
18 2 0.07
ACGTcount: A:0.08, C:0.22, G:0.53, T:0.18
Consensus pattern (18 bp):
GCGGGCGTGGGCACGGTT
Left flanking sequence: Indices 79800 -- 80299
AGGCGCCCGCCCTGTTGGCGTTGTGAATGGCCACAAACGGTGGTCGCGACGAGCGCTCCTTACAA
CGAGGCACCCCCTGAGCATGGGGCAGCAAGCGAACGCCCCCACCGAAGCGTGGCTTCCCACCGCT
GCGTTCACCGCCCACAGAAACCCCCGAAACCCCGCATGGTCTGGCATATTGCCGCGTCCACCGGG
CGTAAGCGACTGAGCGTTGGTGAAAAAAAAAACTCAAAATGGTGGAGAAGGCAAGATTACCCGGT
GGCACAAAACGGGACCAGTGATTCCCGCTGGGCGTTGTCGCGGGGAGGCCACGTCGGACACGGAG
GGCGGCGGTCTGGGCCCATTGCTGGCGGCATCAGTCGATTTTTCGTGTGGTTCTCGCCCGATCCT
GTGGCCTGGTGGTGGCTTTTCTGTTTTGGGATAAATTACTCGAAGGTGCATATTTCCCCTGAACA
CGCCCAGGCACTGGTTGACTACGGGTTTGTGGGGAAGGGGCGTGG
Right flanking sequence: Indices 80351 -- 80850
TTTGGGCGTATCTCGTACCCAATTCGAGAGGTGTAGGTTAGCTCGAGTGGTGTGGGTTAGCTCGA
GTGGTGTGGGGTTTTAGTTCGAGTTTTTGGCGTAGCTTGGCGTAGCGTTTAACACAATGTTTACA
ATGTTTAGCGCAAGGATTATAGCGTGTTATTTTGGTCTATAGTATGTAAATGTACCACTATTACC
TGACATTGTTCTGTCTGAATGCCACCCAGCGACGCCAAGCACCTTACGACACCATTATCCATTCG
ATACGACGCCTGGGTGTCTACAACGCTTGGGTGACTAGCGTGTGTCTGGAGTCTTGACACAATGG
CCATTAACATGGGCTAATAGCTTAACCCATCCTTGGTCTTTGTTATGCAGGCCACCATGTACGAT
CCAGTGCGATCGGGACGGGCTTTAGGCGTGGCCGTTGGGATCGACGAGGCTACCGTTGGGGTTGA
CGGGCCACCGTTGGGACGTTGACGGGACCACCGTTGGCTCGGGTT
Found at i:80439 original size:22 final size:19
Alignment explanation
Indices: 80374--80425 Score: 86
Period size: 19 Copynumber: 2.7 Consensus size: 19
80364 CGTACCCAAT
* *
80374 TCGAGAGGTGTAGGTTAGC
1 TCGAGTGGTGTGGGTTAGC
80393 TCGAGTGGTGTGGGTTAGC
1 TCGAGTGGTGTGGGTTAGC
80412 TCGAGTGGTGTGGG
1 TCGAGTGGTGTGGG
80426 GTTTTAGTTC
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 31 1.00
ACGTcount: A:0.13, C:0.10, G:0.48, T:0.29
Consensus pattern (19 bp):
TCGAGTGGTGTGGGTTAGC
Left flanking sequence: Indices 79874 -- 80373
CCCTGAGCATGGGGCAGCAAGCGAACGCCCCCACCGAAGCGTGGCTTCCCACCGCTGCGTTCACC
GCCCACAGAAACCCCCGAAACCCCGCATGGTCTGGCATATTGCCGCGTCCACCGGGCGTAAGCGA
CTGAGCGTTGGTGAAAAAAAAAACTCAAAATGGTGGAGAAGGCAAGATTACCCGGTGGCACAAAA
CGGGACCAGTGATTCCCGCTGGGCGTTGTCGCGGGGAGGCCACGTCGGACACGGAGGGCGGCGGT
CTGGGCCCATTGCTGGCGGCATCAGTCGATTTTTCGTGTGGTTCTCGCCCGATCCTGTGGCCTGG
TGGTGGCTTTTCTGTTTTGGGATAAATTACTCGAAGGTGCATATTTCCCCTGAACACGCCCAGGC
ACTGGTTGACTACGGGTTTGTGGGGAAGGGGCGTGGGCGGGCGTAGCACGGTTGCGGGTGGGACG
GTTGCGGGCGTGGGCACGTTGCTTTGGGCGTATCTCGTACCCAAT
Right flanking sequence: Indices 80426 -- 80925
GTTTTAGTTCGAGTTTTTGGCGTAGCTTGGCGTAGCGTTTAACACAATGTTTACAATGTTTAGCG
CAAGGATTATAGCGTGTTATTTTGGTCTATAGTATGTAAATGTACCACTATTACCTGACATTGTT
CTGTCTGAATGCCACCCAGCGACGCCAAGCACCTTACGACACCATTATCCATTCGATACGACGCC
TGGGTGTCTACAACGCTTGGGTGACTAGCGTGTGTCTGGAGTCTTGACACAATGGCCATTAACAT
GGGCTAATAGCTTAACCCATCCTTGGTCTTTGTTATGCAGGCCACCATGTACGATCCAGTGCGAT
CGGGACGGGCTTTAGGCGTGGCCGTTGGGATCGACGAGGCTACCGTTGGGGTTGACGGGCCACCG
TTGGGACGTTGACGGGACCACCGTTGGCTCGGGTTGCCAATTGTCGCTGCTACACCGCTGGACTT
TTTTTTTTTTTTGCCGTTACATACCTTTTTGTGACGTTTCCGACA
Found at i:80840 original size:23 final size:20
Alignment explanation
Indices: 80772--80842 Score: 79
Period size: 21 Copynumber: 3.4 Consensus size: 20
80762 TTAGGCGTGG
* * *
80772 CCGTTGGGATCGACGAGGCTA
1 CCGTTGGGGTTGACG-GGCCA
80793 CCGTTGGGGTTGACGGGCCA
1 CCGTTGGGGTTGACGGGCCA
80813 CCGTTGGGACGTTGACGGGACCA
1 CCGTTGGG--GTTGACGGG-CCA
80836 CCGTTGG
1 CCGTTGG
80843 CTCGGGTTGC
Statistics
Matches: 44, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
20 12 0.27
21 13 0.30
22 9 0.20
23 10 0.23
ACGTcount: A:0.14, C:0.25, G:0.41, T:0.20
Consensus pattern (20 bp):
CCGTTGGGGTTGACGGGCCA
Left flanking sequence: Indices 80272 -- 80771
ACTACGGGTTTGTGGGGAAGGGGCGTGGGCGGGCGTAGCACGGTTGCGGGTGGGACGGTTGCGGG
CGTGGGCACGTTGCTTTGGGCGTATCTCGTACCCAATTCGAGAGGTGTAGGTTAGCTCGAGTGGT
GTGGGTTAGCTCGAGTGGTGTGGGGTTTTAGTTCGAGTTTTTGGCGTAGCTTGGCGTAGCGTTTA
ACACAATGTTTACAATGTTTAGCGCAAGGATTATAGCGTGTTATTTTGGTCTATAGTATGTAAAT
GTACCACTATTACCTGACATTGTTCTGTCTGAATGCCACCCAGCGACGCCAAGCACCTTACGACA
CCATTATCCATTCGATACGACGCCTGGGTGTCTACAACGCTTGGGTGACTAGCGTGTGTCTGGAG
TCTTGACACAATGGCCATTAACATGGGCTAATAGCTTAACCCATCCTTGGTCTTTGTTATGCAGG
CCACCATGTACGATCCAGTGCGATCGGGACGGGCTTTAGGCGTGG
Right flanking sequence: Indices 80843 -- 81342
CTCGGGTTGCCAATTGTCGCTGCTACACCGCTGGACTTTTTTTTTTTTTTGCCGTTACATACCTT
TTTGTGACGTTTCCGACACTTTCTCGTCCCCATCGCCCACAATGGGCCCAACAATAGGCCACTTC
CGACATCTGGGCCATTGTTGGCCGCGCTGGTGCCGATACGCGGTGTTTCACCCATATATGGACGG
CCGTTGCTGCCAGATGCGGTAACTCCTCTTGGTTGCTTGCGGGACAAGCCTTGTTTCAAATAAGG
TTCGGGAAACGACTCTGCGAGGTGAGAATGTTTCACCCCGCAATTGTGAAACGAGAAAAACGGTG
AAAAGAAGCGATGTTTATTTTTAGCCTACACAATGAGGGCAGGCTGAGCTGTCCGCAGGCGGGAG
AGTCCCGGTGGTGACAATGAGTCAATGGCTGGTGTGAATGGTGCAAAAGGTGGTGGAGCACGTGG
AACGGTGGAAAAGGGTGGAAAAAGGGTGGAATGCTGGTGGAATAC
Found at i:81368 original size:11 final size:11
Alignment explanation
Indices: 81352--81376 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
81342 CCGGTAAAAA
81352 GGTGTGAACAG
1 GGTGTGAACAG
81363 GGTGTGAACAG
1 GGTGTGAACAG
81374 GGT
1 GGT
81377 CACGGAGTGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.24, C:0.08, G:0.48, T:0.20
Consensus pattern (11 bp):
GGTGTGAACAG
Left flanking sequence: Indices 80852 -- 81351
CCAATTGTCGCTGCTACACCGCTGGACTTTTTTTTTTTTTTGCCGTTACATACCTTTTTGTGACG
TTTCCGACACTTTCTCGTCCCCATCGCCCACAATGGGCCCAACAATAGGCCACTTCCGACATCTG
GGCCATTGTTGGCCGCGCTGGTGCCGATACGCGGTGTTTCACCCATATATGGACGGCCGTTGCTG
CCAGATGCGGTAACTCCTCTTGGTTGCTTGCGGGACAAGCCTTGTTTCAAATAAGGTTCGGGAAA
CGACTCTGCGAGGTGAGAATGTTTCACCCCGCAATTGTGAAACGAGAAAAACGGTGAAAAGAAGC
GATGTTTATTTTTAGCCTACACAATGAGGGCAGGCTGAGCTGTCCGCAGGCGGGAGAGTCCCGGT
GGTGACAATGAGTCAATGGCTGGTGTGAATGGTGCAAAAGGTGGTGGAGCACGTGGAACGGTGGA
AAAGGGTGGAAAAAGGGTGGAATGCTGGTGGAATACCGGTAAAAA
Right flanking sequence: Indices 81377 -- 81876
CACGGAGTGCGAGTGTGATAAGTAGAAAGGTAATGGTGCGTGAGGTGATGGCCAGTGCGATGACG
TGGATAGTCCGTTGACACTGGATTAGTAGATGGAGCAATGTCGAGCGACAAGCAATGTCGAGACA
ATCTAGAACGCATTGTGTCATGCACAGGTGGCTTGCTATGAGCTCAACGTGCTTAGACGTTTAAC
TCAATTGAGATAAGTACAGCGTTCGGTGTTTTAGGTATTCACCTACACCTCAATTGTACTCAATT
GTTTTTCAATTGTGCTTCAGTTGTGTTTCAATTATGCTTCAATTGTCCGTCAATTGTGCATCAGT
TGTGCTTCAATTGTGATTAGCTGTGTTCCAGATGTGTTCCAATCGTGATCCAGTTGTGCTTCGGC
TGTGCTCCAGATGTGTTCAACCATGCTCCAGTTGTGCTTCAGCTGTGCTCCAGCCGTGTTTCAAC
TGTGCTCCACCTGTGCATTAACCATGCTCCACTATGAGCGCACCT
Found at i:81647 original size:11 final size:11
Alignment explanation
Indices: 81631--81716 Score: 64
Period size: 11 Copynumber: 7.8 Consensus size: 11
81621 TCAATTGTAC
*
81631 TCAATTGTTTT
1 TCAATTGTGTT
*
81642 TCAATTGTGCT
1 TCAATTGTGTT
*
81653 TCAGTTGTGTT
1 TCAATTGTGTT
* *
81664 TCAATTATGCT
1 TCAATTGTGTT
***
81675 TCAATTGTCCG
1 TCAATTGTGTT
**
81686 TCAATTGTGCA
1 TCAATTGTGTT
* *
81697 TCAGTTGTGCT
1 TCAATTGTGTT
81708 TCAATTGTG
1 TCAATTGTG
81717 ATTAGCTGTG
Statistics
Matches: 60, Mismatches: 15, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
11 60 1.00
ACGTcount: A:0.19, C:0.16, G:0.19, T:0.47
Consensus pattern (11 bp):
TCAATTGTGTT
Left flanking sequence: Indices 81131 -- 81630
TGTTTCACCCCGCAATTGTGAAACGAGAAAAACGGTGAAAAGAAGCGATGTTTATTTTTAGCCTA
CACAATGAGGGCAGGCTGAGCTGTCCGCAGGCGGGAGAGTCCCGGTGGTGACAATGAGTCAATGG
CTGGTGTGAATGGTGCAAAAGGTGGTGGAGCACGTGGAACGGTGGAAAAGGGTGGAAAAAGGGTG
GAATGCTGGTGGAATACCGGTAAAAAGGTGTGAACAGGGTGTGAACAGGGTCACGGAGTGCGAGT
GTGATAAGTAGAAAGGTAATGGTGCGTGAGGTGATGGCCAGTGCGATGACGTGGATAGTCCGTTG
ACACTGGATTAGTAGATGGAGCAATGTCGAGCGACAAGCAATGTCGAGACAATCTAGAACGCATT
GTGTCATGCACAGGTGGCTTGCTATGAGCTCAACGTGCTTAGACGTTTAACTCAATTGAGATAAG
TACAGCGTTCGGTGTTTTAGGTATTCACCTACACCTCAATTGTAC
Right flanking sequence: Indices 81717 -- 82216
ATTAGCTGTGTTCCAGATGTGTTCCAATCGTGATCCAGTTGTGCTTCGGCTGTGCTCCAGATGTG
TTCAACCATGCTCCAGTTGTGCTTCAGCTGTGCTCCAGCCGTGTTTCAACTGTGCTCCACCTGTG
CATTAACCATGCTCCACTATGAGCGCACCTCTTTTGTACGCGTAACTCCTCATCACAACGTAGAT
CTGAAGTCCTCTCTACTCCCACTCCTCCTCTCACTCTCCCTCTCCCCCTCTTCTCTCTCCCCGTC
TCCCCTCTCCCCTCCCCTCTCCCCTCTCCCTCTCCTCCCCTACTCTCGCAGCTGCCTCCGCTTGC
GCTCCTCCTCGTCGATGATCAGCAACCGCATCGCCTCCTCCACCATGCGGTCCTCCACCAGCTGG
AGCTGGCTCCCCAGCCGCTGGCGCCGGCGCTGGTTGTCGTCGATCAACAAGTTCAGCGCGTGGAT
CGCGGTGGCGGTGGCCGCCTTGCGCGCCAACCGGTTGCGGGCGGC
Found at i:81665 original size:22 final size:22
Alignment explanation
Indices: 81621--81716 Score: 95
Period size: 22 Copynumber: 4.4 Consensus size: 22
81611 CACCTACACC
* **
81621 TCAATTGTAC-TCAATTGTTTT
1 TCAATTGTGCTTCAATTGTGCT
* *
81642 TCAATTGTGCTTCAGTTGTGTT
1 TCAATTGTGCTTCAATTGTGCT
* * *
81664 TCAATTATGCTTCAATTGTCCG
1 TCAATTGTGCTTCAATTGTGCT
* *
81686 TCAATTGTGCATCAGTTGTGCT
1 TCAATTGTGCTTCAATTGTGCT
81708 TCAATTGTG
1 TCAATTGTG
81717 ATTAGCTGTG
Statistics
Matches: 61, Mismatches: 13, Indels: 1
0.81 0.17 0.01
Matches are distributed among these distances:
21 9 0.15
22 52 0.85
ACGTcount: A:0.20, C:0.17, G:0.18, T:0.46
Consensus pattern (22 bp):
TCAATTGTGCTTCAATTGTGCT
Left flanking sequence: Indices 81121 -- 81620
GAGGTGAGAATGTTTCACCCCGCAATTGTGAAACGAGAAAAACGGTGAAAAGAAGCGATGTTTAT
TTTTAGCCTACACAATGAGGGCAGGCTGAGCTGTCCGCAGGCGGGAGAGTCCCGGTGGTGACAAT
GAGTCAATGGCTGGTGTGAATGGTGCAAAAGGTGGTGGAGCACGTGGAACGGTGGAAAAGGGTGG
AAAAAGGGTGGAATGCTGGTGGAATACCGGTAAAAAGGTGTGAACAGGGTGTGAACAGGGTCACG
GAGTGCGAGTGTGATAAGTAGAAAGGTAATGGTGCGTGAGGTGATGGCCAGTGCGATGACGTGGA
TAGTCCGTTGACACTGGATTAGTAGATGGAGCAATGTCGAGCGACAAGCAATGTCGAGACAATCT
AGAACGCATTGTGTCATGCACAGGTGGCTTGCTATGAGCTCAACGTGCTTAGACGTTTAACTCAA
TTGAGATAAGTACAGCGTTCGGTGTTTTAGGTATTCACCTACACC
Right flanking sequence: Indices 81717 -- 82216
ATTAGCTGTGTTCCAGATGTGTTCCAATCGTGATCCAGTTGTGCTTCGGCTGTGCTCCAGATGTG
TTCAACCATGCTCCAGTTGTGCTTCAGCTGTGCTCCAGCCGTGTTTCAACTGTGCTCCACCTGTG
CATTAACCATGCTCCACTATGAGCGCACCTCTTTTGTACGCGTAACTCCTCATCACAACGTAGAT
CTGAAGTCCTCTCTACTCCCACTCCTCCTCTCACTCTCCCTCTCCCCCTCTTCTCTCTCCCCGTC
TCCCCTCTCCCCTCCCCTCTCCCCTCTCCCTCTCCTCCCCTACTCTCGCAGCTGCCTCCGCTTGC
GCTCCTCCTCGTCGATGATCAGCAACCGCATCGCCTCCTCCACCATGCGGTCCTCCACCAGCTGG
AGCTGGCTCCCCAGCCGCTGGCGCCGGCGCTGGTTGTCGTCGATCAACAAGTTCAGCGCGTGGAT
CGCGGTGGCGGTGGCCGCCTTGCGCGCCAACCGGTTGCGGGCGGC
Found at i:81678 original size:33 final size:33
Alignment explanation
Indices: 81641--81716 Score: 89
Period size: 33 Copynumber: 2.3 Consensus size: 33
81631 TCAATTGTTT
* * **
81641 TTCAATTGTGCTTCAGTTGTGTTTCAATTATGC
1 TTCAATTGTGCGTCAATTGTGCATCAATTATGC
* * *
81674 TTCAATTGTCCGTCAATTGTGCATCAGTTGTGC
1 TTCAATTGTGCGTCAATTGTGCATCAATTATGC
81707 TTCAATTGTG
1 TTCAATTGTG
81717 ATTAGCTGTG
Statistics
Matches: 35, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.18, C:0.17, G:0.20, T:0.45
Consensus pattern (33 bp):
TTCAATTGTGCGTCAATTGTGCATCAATTATGC
Left flanking sequence: Indices 81141 -- 81640
CGCAATTGTGAAACGAGAAAAACGGTGAAAAGAAGCGATGTTTATTTTTAGCCTACACAATGAGG
GCAGGCTGAGCTGTCCGCAGGCGGGAGAGTCCCGGTGGTGACAATGAGTCAATGGCTGGTGTGAA
TGGTGCAAAAGGTGGTGGAGCACGTGGAACGGTGGAAAAGGGTGGAAAAAGGGTGGAATGCTGGT
GGAATACCGGTAAAAAGGTGTGAACAGGGTGTGAACAGGGTCACGGAGTGCGAGTGTGATAAGTA
GAAAGGTAATGGTGCGTGAGGTGATGGCCAGTGCGATGACGTGGATAGTCCGTTGACACTGGATT
AGTAGATGGAGCAATGTCGAGCGACAAGCAATGTCGAGACAATCTAGAACGCATTGTGTCATGCA
CAGGTGGCTTGCTATGAGCTCAACGTGCTTAGACGTTTAACTCAATTGAGATAAGTACAGCGTTC
GGTGTTTTAGGTATTCACCTACACCTCAATTGTACTCAATTGTTT
Right flanking sequence: Indices 81717 -- 82216
ATTAGCTGTGTTCCAGATGTGTTCCAATCGTGATCCAGTTGTGCTTCGGCTGTGCTCCAGATGTG
TTCAACCATGCTCCAGTTGTGCTTCAGCTGTGCTCCAGCCGTGTTTCAACTGTGCTCCACCTGTG
CATTAACCATGCTCCACTATGAGCGCACCTCTTTTGTACGCGTAACTCCTCATCACAACGTAGAT
CTGAAGTCCTCTCTACTCCCACTCCTCCTCTCACTCTCCCTCTCCCCCTCTTCTCTCTCCCCGTC
TCCCCTCTCCCCTCCCCTCTCCCCTCTCCCTCTCCTCCCCTACTCTCGCAGCTGCCTCCGCTTGC
GCTCCTCCTCGTCGATGATCAGCAACCGCATCGCCTCCTCCACCATGCGGTCCTCCACCAGCTGG
AGCTGGCTCCCCAGCCGCTGGCGCCGGCGCTGGTTGTCGTCGATCAACAAGTTCAGCGCGTGGAT
CGCGGTGGCGGTGGCCGCCTTGCGCGCCAACCGGTTGCGGGCGGC
Found at i:81775 original size:22 final size:22
Alignment explanation
Indices: 81690--81840 Score: 94
Period size: 22 Copynumber: 7.0 Consensus size: 22
81680 TGTCCGTCAA
* * * *
81690 TTGTGCATCAGTTGTGCTTCAA
1 TTGTGCTTCAGCTGTGCTCCAG
* *
81712 TTGTGATT-AGCTGTGTTCCAG
1 TTGTGCTTCAGCTGTGCTCCAG
* * *
81733 ATGTG-TTCCA-ATCGTGATCCAG
1 TTGTGCTT-CAGCT-GTGCTCCAG
*
81755 TTGTGCTTCGGCTGTGCTCCAG
1 TTGTGCTTCAGCTGTGCTCCAG
* * **
81777 ATGTG-TTCAACCATGCTCCAG
1 TTGTGCTTCAGCTGTGCTCCAG
81798 TTGTGCTTCAGCTGTGCTCCAG
1 TTGTGCTTCAGCTGTGCTCCAG
** * *
81820 CCGTGTTTCAACTGTGCTCCA
1 TTGTGCTTCAGCTGTGCTCCA
81841 CCTGTGCATT
Statistics
Matches: 97, Mismatches: 26, Indels: 12
0.72 0.19 0.09
Matches are distributed among these distances:
20 2 0.02
21 30 0.31
22 62 0.64
23 3 0.03
ACGTcount: A:0.15, C:0.25, G:0.25, T:0.36
Consensus pattern (22 bp):
TTGTGCTTCAGCTGTGCTCCAG
Left flanking sequence: Indices 81190 -- 81689
AGCCTACACAATGAGGGCAGGCTGAGCTGTCCGCAGGCGGGAGAGTCCCGGTGGTGACAATGAGT
CAATGGCTGGTGTGAATGGTGCAAAAGGTGGTGGAGCACGTGGAACGGTGGAAAAGGGTGGAAAA
AGGGTGGAATGCTGGTGGAATACCGGTAAAAAGGTGTGAACAGGGTGTGAACAGGGTCACGGAGT
GCGAGTGTGATAAGTAGAAAGGTAATGGTGCGTGAGGTGATGGCCAGTGCGATGACGTGGATAGT
CCGTTGACACTGGATTAGTAGATGGAGCAATGTCGAGCGACAAGCAATGTCGAGACAATCTAGAA
CGCATTGTGTCATGCACAGGTGGCTTGCTATGAGCTCAACGTGCTTAGACGTTTAACTCAATTGA
GATAAGTACAGCGTTCGGTGTTTTAGGTATTCACCTACACCTCAATTGTACTCAATTGTTTTTCA
ATTGTGCTTCAGTTGTGTTTCAATTATGCTTCAATTGTCCGTCAA
Right flanking sequence: Indices 81841 -- 82340
CCTGTGCATTAACCATGCTCCACTATGAGCGCACCTCTTTTGTACGCGTAACTCCTCATCACAAC
GTAGATCTGAAGTCCTCTCTACTCCCACTCCTCCTCTCACTCTCCCTCTCCCCCTCTTCTCTCTC
CCCGTCTCCCCTCTCCCCTCCCCTCTCCCCTCTCCCTCTCCTCCCCTACTCTCGCAGCTGCCTCC
GCTTGCGCTCCTCCTCGTCGATGATCAGCAACCGCATCGCCTCCTCCACCATGCGGTCCTCCACC
AGCTGGAGCTGGCTCCCCAGCCGCTGGCGCCGGCGCTGGTTGTCGTCGATCAACAAGTTCAGCGC
GTGGATCGCGGTGGCGGTGGCCGCCTTGCGCGCCAACCGGTTGCGGGCGGCCTGTAGCTTGTGCT
CCCAGTCGGGGCGGATCATGTCCACGGTGATGACCCCCTCTGCGGAGGCCGCCAACAGCTGGCGC
CGGCGCGGGGGCTGCGCCGGGGGTGGGGACGCCGCGTCCTCGTCC
Found at i:81798 original size:43 final size:44
Alignment explanation
Indices: 81712--81819 Score: 148
Period size: 43 Copynumber: 2.5 Consensus size: 44
81702 TGTGCTTCAA
* * * *
81712 TTGTGATT-AGCTGTGTTCCAGATGTGTTCCAATCGTGATCCAG
1 TTGTGCTTCAGCTGTGCTCCAGATGTGTTCCAACCATGATCCAG
* *
81755 TTGTGCTTCGGCTGTGCTCCAGATGTGTT-CAACCATGCTCCAG
1 TTGTGCTTCAGCTGTGCTCCAGATGTGTTCCAACCATGATCCAG
81798 TTGTGCTTCAGCTGTGCTCCAG
1 TTGTGCTTCAGCTGTGCTCCAG
81820 CCGTGTTTCA
Statistics
Matches: 57, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
43 39 0.68
44 18 0.32
ACGTcount: A:0.15, C:0.24, G:0.26, T:0.35
Consensus pattern (44 bp):
TTGTGCTTCAGCTGTGCTCCAGATGTGTTCCAACCATGATCCAG
Left flanking sequence: Indices 81212 -- 81711
TGAGCTGTCCGCAGGCGGGAGAGTCCCGGTGGTGACAATGAGTCAATGGCTGGTGTGAATGGTGC
AAAAGGTGGTGGAGCACGTGGAACGGTGGAAAAGGGTGGAAAAAGGGTGGAATGCTGGTGGAATA
CCGGTAAAAAGGTGTGAACAGGGTGTGAACAGGGTCACGGAGTGCGAGTGTGATAAGTAGAAAGG
TAATGGTGCGTGAGGTGATGGCCAGTGCGATGACGTGGATAGTCCGTTGACACTGGATTAGTAGA
TGGAGCAATGTCGAGCGACAAGCAATGTCGAGACAATCTAGAACGCATTGTGTCATGCACAGGTG
GCTTGCTATGAGCTCAACGTGCTTAGACGTTTAACTCAATTGAGATAAGTACAGCGTTCGGTGTT
TTAGGTATTCACCTACACCTCAATTGTACTCAATTGTTTTTCAATTGTGCTTCAGTTGTGTTTCA
ATTATGCTTCAATTGTCCGTCAATTGTGCATCAGTTGTGCTTCAA
Right flanking sequence: Indices 81820 -- 82319
CCGTGTTTCAACTGTGCTCCACCTGTGCATTAACCATGCTCCACTATGAGCGCACCTCTTTTGTA
CGCGTAACTCCTCATCACAACGTAGATCTGAAGTCCTCTCTACTCCCACTCCTCCTCTCACTCTC
CCTCTCCCCCTCTTCTCTCTCCCCGTCTCCCCTCTCCCCTCCCCTCTCCCCTCTCCCTCTCCTCC
CCTACTCTCGCAGCTGCCTCCGCTTGCGCTCCTCCTCGTCGATGATCAGCAACCGCATCGCCTCC
TCCACCATGCGGTCCTCCACCAGCTGGAGCTGGCTCCCCAGCCGCTGGCGCCGGCGCTGGTTGTC
GTCGATCAACAAGTTCAGCGCGTGGATCGCGGTGGCGGTGGCCGCCTTGCGCGCCAACCGGTTGC
GGGCGGCCTGTAGCTTGTGCTCCCAGTCGGGGCGGATCATGTCCACGGTGATGACCCCCTCTGCG
GAGGCCGCCAACAGCTGGCGCCGGCGCGGGGGCTGCGCCGGGGGT
Found at i:81813 original size:11 final size:11
Alignment explanation
Indices: 81750--81847 Score: 54
Period size: 11 Copynumber: 9.0 Consensus size: 11
81740 CCAATCGTGA
*
81750 TCCAGTTGTGC
1 TCCAGCTGTGC
* *
81761 TTCGGCTGTGC
1 TCCAGCTGTGC
*
81772 TCCAGATGTG-
1 TCCAGCTGTGC
* * **
81782 TTCAACCATGC
1 TCCAGCTGTGC
*
81793 TCCAGTTGTGC
1 TCCAGCTGTGC
*
81804 TTCAGCTGTGC
1 TCCAGCTGTGC
* *
81815 TCCAGCCGTGT
1 TCCAGCTGTGC
* *
81826 TTCAACTGTGC
1 TCCAGCTGTGC
*
81837 TCCACCTGTGC
1 TCCAGCTGTGC
81848 ATTAACCATG
Statistics
Matches: 59, Mismatches: 27, Indels: 2
0.67 0.31 0.02
Matches are distributed among these distances:
10 5 0.08
11 54 0.92
ACGTcount: A:0.12, C:0.31, G:0.24, T:0.33
Consensus pattern (11 bp):
TCCAGCTGTGC
Left flanking sequence: Indices 81250 -- 81749
TGAGTCAATGGCTGGTGTGAATGGTGCAAAAGGTGGTGGAGCACGTGGAACGGTGGAAAAGGGTG
GAAAAAGGGTGGAATGCTGGTGGAATACCGGTAAAAAGGTGTGAACAGGGTGTGAACAGGGTCAC
GGAGTGCGAGTGTGATAAGTAGAAAGGTAATGGTGCGTGAGGTGATGGCCAGTGCGATGACGTGG
ATAGTCCGTTGACACTGGATTAGTAGATGGAGCAATGTCGAGCGACAAGCAATGTCGAGACAATC
TAGAACGCATTGTGTCATGCACAGGTGGCTTGCTATGAGCTCAACGTGCTTAGACGTTTAACTCA
ATTGAGATAAGTACAGCGTTCGGTGTTTTAGGTATTCACCTACACCTCAATTGTACTCAATTGTT
TTTCAATTGTGCTTCAGTTGTGTTTCAATTATGCTTCAATTGTCCGTCAATTGTGCATCAGTTGT
GCTTCAATTGTGATTAGCTGTGTTCCAGATGTGTTCCAATCGTGA
Right flanking sequence: Indices 81848 -- 82347
ATTAACCATGCTCCACTATGAGCGCACCTCTTTTGTACGCGTAACTCCTCATCACAACGTAGATC
TGAAGTCCTCTCTACTCCCACTCCTCCTCTCACTCTCCCTCTCCCCCTCTTCTCTCTCCCCGTCT
CCCCTCTCCCCTCCCCTCTCCCCTCTCCCTCTCCTCCCCTACTCTCGCAGCTGCCTCCGCTTGCG
CTCCTCCTCGTCGATGATCAGCAACCGCATCGCCTCCTCCACCATGCGGTCCTCCACCAGCTGGA
GCTGGCTCCCCAGCCGCTGGCGCCGGCGCTGGTTGTCGTCGATCAACAAGTTCAGCGCGTGGATC
GCGGTGGCGGTGGCCGCCTTGCGCGCCAACCGGTTGCGGGCGGCCTGTAGCTTGTGCTCCCAGTC
GGGGCGGATCATGTCCACGGTGATGACCCCCTCTGCGGAGGCCGCCAACAGCTGGCGCCGGCGCG
GGGGCTGCGCCGGGGGTGGGGACGCCGCGTCCTCGTCCAGCGCCA
Found at i:81826 original size:43 final size:44
Alignment explanation
Indices: 81712--81840 Score: 136
Period size: 43 Copynumber: 3.0 Consensus size: 44
81702 TGTGCTTCAA
* * * * * * *
81712 TTGTGATT-AGCTGTGTTCCAGATGTGTTCCAATCGTGATCCAG
1 TTGTGCTTCAGCTGTGCTCCAGACGTGTTTCAACCATGCTCCAG
* *
81755 TTGTGCTTCGGCTGTGCTCCAGATGTG-TTCAACCATGCTCCAG
1 TTGTGCTTCAGCTGTGCTCCAGACGTGTTTCAACCATGCTCCAG
* **
81798 TTGTGCTTCAGCTGTGCTCCAGCCGTGTTTCAACTGTGCTCCA
1 TTGTGCTTCAGCTGTGCTCCAGACGTGTTTCAACCATGCTCCA
81841 CCTGTGCATT
Statistics
Matches: 72, Mismatches: 12, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
43 43 0.60
44 29 0.40
ACGTcount: A:0.15, C:0.26, G:0.25, T:0.35
Consensus pattern (44 bp):
TTGTGCTTCAGCTGTGCTCCAGACGTGTTTCAACCATGCTCCAG
Left flanking sequence: Indices 81212 -- 81711
TGAGCTGTCCGCAGGCGGGAGAGTCCCGGTGGTGACAATGAGTCAATGGCTGGTGTGAATGGTGC
AAAAGGTGGTGGAGCACGTGGAACGGTGGAAAAGGGTGGAAAAAGGGTGGAATGCTGGTGGAATA
CCGGTAAAAAGGTGTGAACAGGGTGTGAACAGGGTCACGGAGTGCGAGTGTGATAAGTAGAAAGG
TAATGGTGCGTGAGGTGATGGCCAGTGCGATGACGTGGATAGTCCGTTGACACTGGATTAGTAGA
TGGAGCAATGTCGAGCGACAAGCAATGTCGAGACAATCTAGAACGCATTGTGTCATGCACAGGTG
GCTTGCTATGAGCTCAACGTGCTTAGACGTTTAACTCAATTGAGATAAGTACAGCGTTCGGTGTT
TTAGGTATTCACCTACACCTCAATTGTACTCAATTGTTTTTCAATTGTGCTTCAGTTGTGTTTCA
ATTATGCTTCAATTGTCCGTCAATTGTGCATCAGTTGTGCTTCAA
Right flanking sequence: Indices 81841 -- 82340
CCTGTGCATTAACCATGCTCCACTATGAGCGCACCTCTTTTGTACGCGTAACTCCTCATCACAAC
GTAGATCTGAAGTCCTCTCTACTCCCACTCCTCCTCTCACTCTCCCTCTCCCCCTCTTCTCTCTC
CCCGTCTCCCCTCTCCCCTCCCCTCTCCCCTCTCCCTCTCCTCCCCTACTCTCGCAGCTGCCTCC
GCTTGCGCTCCTCCTCGTCGATGATCAGCAACCGCATCGCCTCCTCCACCATGCGGTCCTCCACC
AGCTGGAGCTGGCTCCCCAGCCGCTGGCGCCGGCGCTGGTTGTCGTCGATCAACAAGTTCAGCGC
GTGGATCGCGGTGGCGGTGGCCGCCTTGCGCGCCAACCGGTTGCGGGCGGCCTGTAGCTTGTGCT
CCCAGTCGGGGCGGATCATGTCCACGGTGATGACCCCCTCTGCGGAGGCCGCCAACAGCTGGCGC
CGGCGCGGGGGCTGCGCCGGGGGTGGGGACGCCGCGTCCTCGTCC
Found at i:81956 original size:6 final size:6
Alignment explanation
Indices: 81938--82011 Score: 55
Period size: 6 Copynumber: 12.2 Consensus size: 6
81928 TCCCACTCCT
* * * *
81938 CCTCTC ACTCTC CCTCTC CCCCT- CTTCTC TCTC-C CCGTCTCC CCTCTC
1 CCTCTC CCTCTC CCTCTC CCTCTC CCTCTC CCTCTC CC-TCT-C CCTCTC
81986 CC-CTCC CCTCTCC CCTCTC CCTCTC C
1 CCTCT-C CCTCT-C CCTCTC CCTCTC C
82012 TCCCCTACTC
Statistics
Matches: 54, Mismatches: 8, Indels: 12
0.73 0.11 0.16
Matches are distributed among these distances:
5 7 0.13
6 32 0.59
7 12 0.22
8 3 0.06
ACGTcount: A:0.01, C:0.66, G:0.01, T:0.31
Consensus pattern (6 bp):
CCTCTC
Left flanking sequence: Indices 81438 -- 81937
GACGTGGATAGTCCGTTGACACTGGATTAGTAGATGGAGCAATGTCGAGCGACAAGCAATGTCGA
GACAATCTAGAACGCATTGTGTCATGCACAGGTGGCTTGCTATGAGCTCAACGTGCTTAGACGTT
TAACTCAATTGAGATAAGTACAGCGTTCGGTGTTTTAGGTATTCACCTACACCTCAATTGTACTC
AATTGTTTTTCAATTGTGCTTCAGTTGTGTTTCAATTATGCTTCAATTGTCCGTCAATTGTGCAT
CAGTTGTGCTTCAATTGTGATTAGCTGTGTTCCAGATGTGTTCCAATCGTGATCCAGTTGTGCTT
CGGCTGTGCTCCAGATGTGTTCAACCATGCTCCAGTTGTGCTTCAGCTGTGCTCCAGCCGTGTTT
CAACTGTGCTCCACCTGTGCATTAACCATGCTCCACTATGAGCGCACCTCTTTTGTACGCGTAAC
TCCTCATCACAACGTAGATCTGAAGTCCTCTCTACTCCCACTCCT
Right flanking sequence: Indices 82012 -- 82511
TCCCCTACTCTCGCAGCTGCCTCCGCTTGCGCTCCTCCTCGTCGATGATCAGCAACCGCATCGCC
TCCTCCACCATGCGGTCCTCCACCAGCTGGAGCTGGCTCCCCAGCCGCTGGCGCCGGCGCTGGTT
GTCGTCGATCAACAAGTTCAGCGCGTGGATCGCGGTGGCGGTGGCCGCCTTGCGCGCCAACCGGT
TGCGGGCGGCCTGTAGCTTGTGCTCCCAGTCGGGGCGGATCATGTCCACGGTGATGACCCCCTCT
GCGGAGGCCGCCAACAGCTGGCGCCGGCGCGGGGGCTGCGCCGGGGGTGGGGACGCCGCGTCCTC
GTCCAGCGCCACCGCCTCGTCGGTGTGCTCGAGCGCCACGGGGGTGCCGGGGGCGGGCGTGGAGG
CACCGGAGGGGGCGCCAGAGGGTGCGCCAGAGGGTGCGCCCGAACCAGCACCGACGGAGGGTGCA
CCCGAGGCTGCACCGGAAGCAACACCCGAGGCACCCCAATGGCCG
Found at i:81969 original size:15 final size:15
Alignment explanation
Indices: 81945--82011 Score: 65
Period size: 15 Copynumber: 4.9 Consensus size: 15
81935 CCTCCTCTCA
81945 CTCT-CCCTCTCCCC
1 CTCTCCCCTCTCCCC
* *
81959 CTCTTCTCTCTCCCC
1 CTCTCCCCTCTCCCC
*
81974 GTCTCCCCTCT--CC
1 CTCTCCCCTCTCCCC
81987 C-CTCCCCTCT-CCC
1 CTCTCCCCTCTCCCC
82000 CTCT-CCCTCTCC
1 CTCTCCCCTCTCC
82012 TCCCCTACTC
Statistics
Matches: 44, Mismatches: 5, Indels: 8
0.77 0.09 0.14
Matches are distributed among these distances:
12 9 0.20
13 11 0.25
14 7 0.16
15 17 0.39
ACGTcount: A:0.00, C:0.67, G:0.01, T:0.31
Consensus pattern (15 bp):
CTCTCCCCTCTCCCC
Left flanking sequence: Indices 81445 -- 81944
ATAGTCCGTTGACACTGGATTAGTAGATGGAGCAATGTCGAGCGACAAGCAATGTCGAGACAATC
TAGAACGCATTGTGTCATGCACAGGTGGCTTGCTATGAGCTCAACGTGCTTAGACGTTTAACTCA
ATTGAGATAAGTACAGCGTTCGGTGTTTTAGGTATTCACCTACACCTCAATTGTACTCAATTGTT
TTTCAATTGTGCTTCAGTTGTGTTTCAATTATGCTTCAATTGTCCGTCAATTGTGCATCAGTTGT
GCTTCAATTGTGATTAGCTGTGTTCCAGATGTGTTCCAATCGTGATCCAGTTGTGCTTCGGCTGT
GCTCCAGATGTGTTCAACCATGCTCCAGTTGTGCTTCAGCTGTGCTCCAGCCGTGTTTCAACTGT
GCTCCACCTGTGCATTAACCATGCTCCACTATGAGCGCACCTCTTTTGTACGCGTAACTCCTCAT
CACAACGTAGATCTGAAGTCCTCTCTACTCCCACTCCTCCTCTCA
Right flanking sequence: Indices 82012 -- 82511
TCCCCTACTCTCGCAGCTGCCTCCGCTTGCGCTCCTCCTCGTCGATGATCAGCAACCGCATCGCC
TCCTCCACCATGCGGTCCTCCACCAGCTGGAGCTGGCTCCCCAGCCGCTGGCGCCGGCGCTGGTT
GTCGTCGATCAACAAGTTCAGCGCGTGGATCGCGGTGGCGGTGGCCGCCTTGCGCGCCAACCGGT
TGCGGGCGGCCTGTAGCTTGTGCTCCCAGTCGGGGCGGATCATGTCCACGGTGATGACCCCCTCT
GCGGAGGCCGCCAACAGCTGGCGCCGGCGCGGGGGCTGCGCCGGGGGTGGGGACGCCGCGTCCTC
GTCCAGCGCCACCGCCTCGTCGGTGTGCTCGAGCGCCACGGGGGTGCCGGGGGCGGGCGTGGAGG
CACCGGAGGGGGCGCCAGAGGGTGCGCCAGAGGGTGCGCCCGAACCAGCACCGACGGAGGGTGCA
CCCGAGGCTGCACCGGAAGCAACACCCGAGGCACCCCAATGGCCG
Found at i:81985 original size:7 final size:7
Alignment explanation
Indices: 81945--82017 Score: 71
Period size: 7 Copynumber: 10.3 Consensus size: 7
81935 CCTCCTCTCA
81945 CTCT-CC
1 CTCTCCC
81951 CTCTCCCC
1 CTCT-CCC
* *
81959 CTCTTCT
1 CTCTCCC
81966 CTCTCCC
1 CTCTCCC
81973 CGTCTCCC
1 C-TCTCCC
81981 CTCT-CC
1 CTCTCCC
81987 C-CTCCC
1 CTCTCCC
81993 CTCTCCC
1 CTCTCCC
82000 CTCTCCC
1 CTCTCCC
82007 TCTCCTCCC
1 -CT-CTCCC
82016 CT
1 CT
82018 ACTCTCGCAG
Statistics
Matches: 56, Mismatches: 4, Indels: 12
0.78 0.06 0.17
Matches are distributed among these distances:
5 2 0.04
6 10 0.18
7 22 0.39
8 17 0.30
9 5 0.09
ACGTcount: A:0.00, C:0.67, G:0.01, T:0.32
Consensus pattern (7 bp):
CTCTCCC
Left flanking sequence: Indices 81445 -- 81944
ATAGTCCGTTGACACTGGATTAGTAGATGGAGCAATGTCGAGCGACAAGCAATGTCGAGACAATC
TAGAACGCATTGTGTCATGCACAGGTGGCTTGCTATGAGCTCAACGTGCTTAGACGTTTAACTCA
ATTGAGATAAGTACAGCGTTCGGTGTTTTAGGTATTCACCTACACCTCAATTGTACTCAATTGTT
TTTCAATTGTGCTTCAGTTGTGTTTCAATTATGCTTCAATTGTCCGTCAATTGTGCATCAGTTGT
GCTTCAATTGTGATTAGCTGTGTTCCAGATGTGTTCCAATCGTGATCCAGTTGTGCTTCGGCTGT
GCTCCAGATGTGTTCAACCATGCTCCAGTTGTGCTTCAGCTGTGCTCCAGCCGTGTTTCAACTGT
GCTCCACCTGTGCATTAACCATGCTCCACTATGAGCGCACCTCTTTTGTACGCGTAACTCCTCAT
CACAACGTAGATCTGAAGTCCTCTCTACTCCCACTCCTCCTCTCA
Right flanking sequence: Indices 82018 -- 82517
ACTCTCGCAGCTGCCTCCGCTTGCGCTCCTCCTCGTCGATGATCAGCAACCGCATCGCCTCCTCC
ACCATGCGGTCCTCCACCAGCTGGAGCTGGCTCCCCAGCCGCTGGCGCCGGCGCTGGTTGTCGTC
GATCAACAAGTTCAGCGCGTGGATCGCGGTGGCGGTGGCCGCCTTGCGCGCCAACCGGTTGCGGG
CGGCCTGTAGCTTGTGCTCCCAGTCGGGGCGGATCATGTCCACGGTGATGACCCCCTCTGCGGAG
GCCGCCAACAGCTGGCGCCGGCGCGGGGGCTGCGCCGGGGGTGGGGACGCCGCGTCCTCGTCCAG
CGCCACCGCCTCGTCGGTGTGCTCGAGCGCCACGGGGGTGCCGGGGGCGGGCGTGGAGGCACCGG
AGGGGGCGCCAGAGGGTGCGCCAGAGGGTGCGCCCGAACCAGCACCGACGGAGGGTGCACCCGAG
GCTGCACCGGAAGCAACACCCGAGGCACCCCAATGGCCGGGCTTG
Found at i:81985 original size:19 final size:18
Alignment explanation
Indices: 81933--82013 Score: 72
Period size: 20 Copynumber: 4.1 Consensus size: 18
81923 TCTACTCCCA
*
81933 CTCCTCCTCTCACTCTCCCT
1 CTCC-CCTCTCCCTC-CCCT
81953 CTCCCCCTCTTCTCTCTCCCCGT
1 CT-CCCCTC-TC-C-CTCCCC-T
81976 CTCCCCTCTCCCCTCCCCT
1 CTCCCCTCT-CCCTCCCCT
*
81995 CTCCCCTCTCCCTCTCCT
1 CTCCCCTCTCCCTCCCCT
82013 C
1 C
82014 CCCTACTCTC
Statistics
Matches: 53, Mismatches: 2, Indels: 14
0.77 0.03 0.20
Matches are distributed among these distances:
18 9 0.17
19 10 0.19
20 12 0.23
21 6 0.11
22 10 0.19
23 6 0.11
ACGTcount: A:0.01, C:0.65, G:0.01, T:0.32
Consensus pattern (18 bp):
CTCCCCTCTCCCTCCCCT
Left flanking sequence: Indices 81433 -- 81932
GCGATGACGTGGATAGTCCGTTGACACTGGATTAGTAGATGGAGCAATGTCGAGCGACAAGCAAT
GTCGAGACAATCTAGAACGCATTGTGTCATGCACAGGTGGCTTGCTATGAGCTCAACGTGCTTAG
ACGTTTAACTCAATTGAGATAAGTACAGCGTTCGGTGTTTTAGGTATTCACCTACACCTCAATTG
TACTCAATTGTTTTTCAATTGTGCTTCAGTTGTGTTTCAATTATGCTTCAATTGTCCGTCAATTG
TGCATCAGTTGTGCTTCAATTGTGATTAGCTGTGTTCCAGATGTGTTCCAATCGTGATCCAGTTG
TGCTTCGGCTGTGCTCCAGATGTGTTCAACCATGCTCCAGTTGTGCTTCAGCTGTGCTCCAGCCG
TGTTTCAACTGTGCTCCACCTGTGCATTAACCATGCTCCACTATGAGCGCACCTCTTTTGTACGC
GTAACTCCTCATCACAACGTAGATCTGAAGTCCTCTCTACTCCCA
Right flanking sequence: Indices 82014 -- 82513
CCCTACTCTCGCAGCTGCCTCCGCTTGCGCTCCTCCTCGTCGATGATCAGCAACCGCATCGCCTC
CTCCACCATGCGGTCCTCCACCAGCTGGAGCTGGCTCCCCAGCCGCTGGCGCCGGCGCTGGTTGT
CGTCGATCAACAAGTTCAGCGCGTGGATCGCGGTGGCGGTGGCCGCCTTGCGCGCCAACCGGTTG
CGGGCGGCCTGTAGCTTGTGCTCCCAGTCGGGGCGGATCATGTCCACGGTGATGACCCCCTCTGC
GGAGGCCGCCAACAGCTGGCGCCGGCGCGGGGGCTGCGCCGGGGGTGGGGACGCCGCGTCCTCGT
CCAGCGCCACCGCCTCGTCGGTGTGCTCGAGCGCCACGGGGGTGCCGGGGGCGGGCGTGGAGGCA
CCGGAGGGGGCGCCAGAGGGTGCGCCAGAGGGTGCGCCCGAACCAGCACCGACGGAGGGTGCACC
CGAGGCTGCACCGGAAGCAACACCCGAGGCACCCCAATGGCCGGG
Found at i:81991 original size:12 final size:12
Alignment explanation
Indices: 81976--82011 Score: 63
Period size: 12 Copynumber: 2.9 Consensus size: 12
81966 CTCTCCCCGT
81976 CTCCCCTCTCCC
1 CTCCCCTCTCCC
81988 CTCCCCTCTCCC
1 CTCCCCTCTCCC
82000 CTCTCCCTCTCC
1 CTC-CCCTCTCC
82012 TCCCCTACTC
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
12 15 0.65
13 8 0.35
ACGTcount: A:0.00, C:0.72, G:0.00, T:0.28
Consensus pattern (12 bp):
CTCCCCTCTCCC
Left flanking sequence: Indices 81476 -- 81975
GCAATGTCGAGCGACAAGCAATGTCGAGACAATCTAGAACGCATTGTGTCATGCACAGGTGGCTT
GCTATGAGCTCAACGTGCTTAGACGTTTAACTCAATTGAGATAAGTACAGCGTTCGGTGTTTTAG
GTATTCACCTACACCTCAATTGTACTCAATTGTTTTTCAATTGTGCTTCAGTTGTGTTTCAATTA
TGCTTCAATTGTCCGTCAATTGTGCATCAGTTGTGCTTCAATTGTGATTAGCTGTGTTCCAGATG
TGTTCCAATCGTGATCCAGTTGTGCTTCGGCTGTGCTCCAGATGTGTTCAACCATGCTCCAGTTG
TGCTTCAGCTGTGCTCCAGCCGTGTTTCAACTGTGCTCCACCTGTGCATTAACCATGCTCCACTA
TGAGCGCACCTCTTTTGTACGCGTAACTCCTCATCACAACGTAGATCTGAAGTCCTCTCTACTCC
CACTCCTCCTCTCACTCTCCCTCTCCCCCTCTTCTCTCTCCCCGT
Right flanking sequence: Indices 82012 -- 82511
TCCCCTACTCTCGCAGCTGCCTCCGCTTGCGCTCCTCCTCGTCGATGATCAGCAACCGCATCGCC
TCCTCCACCATGCGGTCCTCCACCAGCTGGAGCTGGCTCCCCAGCCGCTGGCGCCGGCGCTGGTT
GTCGTCGATCAACAAGTTCAGCGCGTGGATCGCGGTGGCGGTGGCCGCCTTGCGCGCCAACCGGT
TGCGGGCGGCCTGTAGCTTGTGCTCCCAGTCGGGGCGGATCATGTCCACGGTGATGACCCCCTCT
GCGGAGGCCGCCAACAGCTGGCGCCGGCGCGGGGGCTGCGCCGGGGGTGGGGACGCCGCGTCCTC
GTCCAGCGCCACCGCCTCGTCGGTGTGCTCGAGCGCCACGGGGGTGCCGGGGGCGGGCGTGGAGG
CACCGGAGGGGGCGCCAGAGGGTGCGCCAGAGGGTGCGCCCGAACCAGCACCGACGGAGGGTGCA
CCCGAGGCTGCACCGGAAGCAACACCCGAGGCACCCCAATGGCCG
Found at i:82428 original size:12 final size:12
Alignment explanation
Indices: 82407--82441 Score: 61
Period size: 12 Copynumber: 2.9 Consensus size: 12
82397 GGAGGCACCG
*
82407 GAGGGGGCGCCA
1 GAGGGTGCGCCA
82419 GAGGGTGCGCCA
1 GAGGGTGCGCCA
82431 GAGGGTGCGCC
1 GAGGGTGCGCC
82442 CGAACCAGCA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.14, C:0.26, G:0.54, T:0.06
Consensus pattern (12 bp):
GAGGGTGCGCCA
Left flanking sequence: Indices 81907 -- 82406
TAGATCTGAAGTCCTCTCTACTCCCACTCCTCCTCTCACTCTCCCTCTCCCCCTCTTCTCTCTCC
CCGTCTCCCCTCTCCCCTCCCCTCTCCCCTCTCCCTCTCCTCCCCTACTCTCGCAGCTGCCTCCG
CTTGCGCTCCTCCTCGTCGATGATCAGCAACCGCATCGCCTCCTCCACCATGCGGTCCTCCACCA
GCTGGAGCTGGCTCCCCAGCCGCTGGCGCCGGCGCTGGTTGTCGTCGATCAACAAGTTCAGCGCG
TGGATCGCGGTGGCGGTGGCCGCCTTGCGCGCCAACCGGTTGCGGGCGGCCTGTAGCTTGTGCTC
CCAGTCGGGGCGGATCATGTCCACGGTGATGACCCCCTCTGCGGAGGCCGCCAACAGCTGGCGCC
GGCGCGGGGGCTGCGCCGGGGGTGGGGACGCCGCGTCCTCGTCCAGCGCCACCGCCTCGTCGGTG
TGCTCGAGCGCCACGGGGGTGCCGGGGGCGGGCGTGGAGGCACCG
Right flanking sequence: Indices 82442 -- 82941
CGAACCAGCACCGACGGAGGGTGCACCCGAGGCTGCACCGGAAGCAACACCCGAGGCACCCCAAT
GGCCGGGCTTGCACTTGCCCCCGATCCCCACACAGATGTCGGTGGGGGCGTCGTAGGTGACGCCA
AACTCGGGCAGCGCGCAGTAGGGACAGTTCGCTGGCTCCAGGATCAACAGGTGGGGCGTCTCGTC
CTGGCCAGCAGGATCGTCGTGCGGCGGGTGGGGGTCCAAGCGCCGGATCTGCACAAAGCACTCGG
TGCAGATGGGCTGGACACAGCACCGGGAGATGTTGAGCGGGCCGGGGTAGTACAAGAAGCAGATG
GGGCACTCGGTGCCGTGGCGGTACAACCGGAGCATCAACCCCGGGTTGGCGACCTCGGGGGAGCC
GCCCTCGGCGCCGGGGTCGCCCTGGGCGCGCGCGCGCCACCGCATCTTCTCCTCCTGCCAGCGTG
CCTCCTCCTCCTTCTGGAGGTGCTTGACACGCTCCTTGAGGGCCT
Found at i:83521 original size:15 final size:16
Alignment explanation
Indices: 83493--83522 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
83483 GAGCGAAAAT
83493 TGCGGGTACGGGTGCG
1 TGCGGGTACGGGTGCG
83509 TGCGGGT-CGGGTGC
1 TGCGGGTACGGGTGC
83523 AAGCGAGAGG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.03, C:0.20, G:0.57, T:0.20
Consensus pattern (16 bp):
TGCGGGTACGGGTGCG
Left flanking sequence: Indices 82993 -- 83492
TCTTGTGGTTGTCGATGTCGTCCTCGTCGTCGTCCAGGTACGCCAAGTCGATCAGGTGGAGCGGG
AGCTGCGACACGAGCACGAGGAGCTCCTGGTCGCTCCACCCGGCGTCGTAGTCCTGAAGCGGGGT
GTAGAACGGTGCCAACCGGCGCAGCACAATGAGGTCGCGCACCTCCTCCGTCGAGAAGGTGAGGT
TCAGGCGGTAGGTGCCCCAGGGGGCCAAGAAGCCGCCGTCGACGTTCTCCGCCACCCGCACCACC
AAGTGCATCCAGTGCACCTCGCGCGCCCGGTCCTTCTCCTGTTGCTTGCGCACCCGGCGGTCCAG
CAGCCCCACGGTGTTGCGGCGCAGGCCCCCGGTGCGGGTGATGAACCCGGTGGCGTCGCGCCCGG
CGTACAGGTTCAGCCGCGAGCGTCCTTCCTTCGCTGGCACGTTTCCCATGGTGTGGTGGTGTGTG
GTGGTCGTGTGCTGTGGGGTGCTTTCGGGTGCGGTGAGCGAAAAT
Right flanking sequence: Indices 83523 -- 84022
AAGCGAGAGGCGGAAGTGTGGTGGGGAGGAGGGGAGGAGGGGGTGGAAAGGAGAAGTGGGAGAGG
AGAAGTGGGGAGTGGGAACGGTTAGTTGTTGTGGGTTTATGGCGAGAGCATTGGCACGGTGTTAC
GACGGGTGGGATTGCCTGACTCGCTTAATCGCCTTATCTACCGGTAGATCGGATTTGGTGGCGTT
GGCCCCGCGCCTGCAGACAGTGCCGGCTCCGGAGATAGAGGCGGGCAGAGGAGAGGTGAGGCCTG
GGGAGGAAGGGAGGGGCGGAAATGGGGGGTTGGAGGGAACGGAGGAAACGGGGGAAATGGGGAAA
TGGGAAAAATGGGGGAAAATGGGGGAGGATTGGAGAAGGAGGTAAAGGTTGTGGTGGTGGTGGTG
GTGAAGGTGATGGTGTAGTTATGGGGTGTAGAGCAACACTAAAAAGATCGTGGTGTCCCACGTTT
AGGCGTTAGCGAGCCGGTTCGGAGATTCGGGCGTTTTCGTGGGGG
Found at i:83844 original size:9 final size:9
Alignment explanation
Indices: 83826--83873 Score: 53
Period size: 9 Copynumber: 5.3 Consensus size: 9
83816 AGGGAACGGA
*
83826 GGAAACGGG
1 GGAAATGGG
83835 GGAAAT-GG
1 GGAAATGGG
83843 GGAAATGGG
1 GGAAATGGG
**
83852 AAAAATGGG
1 GGAAATGGG
83861 GGAAAATGGG
1 GG-AAATGGG
83871 GGA
1 GGA
83874 GGATTGGAGA
Statistics
Matches: 32, Mismatches: 5, Indels: 4
0.78 0.12 0.10
Matches are distributed among these distances:
8 8 0.25
9 15 0.47
10 9 0.28
ACGTcount: A:0.40, C:0.02, G:0.50, T:0.08
Consensus pattern (9 bp):
GGAAATGGG
Left flanking sequence: Indices 83326 -- 83825
CGGTGTTGCGGCGCAGGCCCCCGGTGCGGGTGATGAACCCGGTGGCGTCGCGCCCGGCGTACAGG
TTCAGCCGCGAGCGTCCTTCCTTCGCTGGCACGTTTCCCATGGTGTGGTGGTGTGTGGTGGTCGT
GTGCTGTGGGGTGCTTTCGGGTGCGGTGAGCGAAAATTGCGGGTACGGGTGCGTGCGGGTCGGGT
GCAAGCGAGAGGCGGAAGTGTGGTGGGGAGGAGGGGAGGAGGGGGTGGAAAGGAGAAGTGGGAGA
GGAGAAGTGGGGAGTGGGAACGGTTAGTTGTTGTGGGTTTATGGCGAGAGCATTGGCACGGTGTT
ACGACGGGTGGGATTGCCTGACTCGCTTAATCGCCTTATCTACCGGTAGATCGGATTTGGTGGCG
TTGGCCCCGCGCCTGCAGACAGTGCCGGCTCCGGAGATAGAGGCGGGCAGAGGAGAGGTGAGGCC
TGGGGAGGAAGGGAGGGGCGGAAATGGGGGGTTGGAGGGAACGGA
Right flanking sequence: Indices 83874 -- 84373
GGATTGGAGAAGGAGGTAAAGGTTGTGGTGGTGGTGGTGGTGAAGGTGATGGTGTAGTTATGGGG
TGTAGAGCAACACTAAAAAGATCGTGGTGTCCCACGTTTAGGCGTTAGCGAGCCGGTTCGGAGAT
TCGGGCGTTTTCGTGGGGGCGGCGAAGACCATCGGTGCCCGGCGATGTGGTTGGCGGTAGACTAC
TGAGCTTCGCCGGCGTGGGCTGGCCGTGGTTGGGGTGCACGGCCCGAGGTGATTTTCCGGTCGGA
GAAACTCGGCAGAGCAATTGTAGGGAAAAGGAAGGGGGAGAAAGAAGGTGGAGGAGGTGGGTTGC
GATGGGGTGGTTCTTACTGGTGTATGGTTTGGGTGGTTTTATGGTGGTTTTATGGACGGGTTATT
GGGTGTATGTAACGACTTTAGGGTCAGAATCCAGGGGCCAGAGGCACCGTTGGTAATTATCTTCG
CCAGGGAGGATATCTTACCCAGATCCAAGGGTGCGAAATAAGGTT
Found at i:84890 original size:9 final size:9
Alignment explanation
Indices: 84876--84915 Score: 71
Period size: 9 Copynumber: 4.4 Consensus size: 9
84866 TGTCACCCAT
84876 AGTCTCACC
1 AGTCTCACC
84885 AGTCTCACC
1 AGTCTCACC
84894 AGTCTCACC
1 AGTCTCACC
*
84903 AATCTCACC
1 AGTCTCACC
84912 AGTC
1 AGTC
84916 ACCATTAGTC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
9 29 1.00
ACGTcount: A:0.25, C:0.42, G:0.10, T:0.23
Consensus pattern (9 bp):
AGTCTCACC
Left flanking sequence: Indices 84376 -- 84875
GGAATTAGATGGGAGTAGATGAGAGTCCCAATAGTCGGAGTCTCTCTTCTATAGTGTAACAATAC
CCAGGAGTGTAGCTTGTGTAACCTAATAGGTTTACATTTCTGTTACTACCTCATACATAGATGGC
TACCGTTCATGATTAGATGCGTCTATTAGGTAGTATTGTGGGTTCTTTGGGCCTTGTAGACGGCT
GATTACGACCCTGACCGATGACTCCGAACTACGAGGTGGGGAAGATAAGGTCCGAGGGTCAGCGA
GGGTCGGACGGGGTGGTGTCAGGCCAACCTGGTGGTGTCGGTGGTGTCGGTGGCGCCAAGTGTGG
CTTGGTCGGCTACCATTGTTCTGTATATCGCCAACCCATATACGAGGCGTGTTTTGACGGGAGCT
ACGAGCCAGCGGAGACGGTTACCAGGTGGTCTCCAGCTGGGAGGTGGTGATAGCCCACGGGGTCT
TGGCTAGTCATGCGAACCACTAGTCACACCCTGAGTGTCACCCAT
Right flanking sequence: Indices 84916 -- 85415
ACCATTAGTCCCACTATAGTCCCACAGTAGTCAGTGCTAAAAAAAGACACAAGGAGGATATACTA
GAGAAGCCTACCACAGCAAGATCGCAACCGGACGCTGGCGGGCTAATCGCAACCCCAGCAATCCC
GTATAGGCCTGCCTTTGTTCCCGAGCGTGCTCCAACCCTAAGTTGTCCCATAATACGTCAACCTA
AAAATAGCAACATATTTTGATGGGTCGATCGCGAGGCTAAATACAATAAAACGGCGCTGGTTGGC
ACAATTGCGGATAAAGACAGCCATGGTCGTTCTAGTGGTGCTTGTGTTGTTCTCCGCGTTGGTGT
GGGCGTCCATGACGATGATTACCCCGTGCAATCTGCCCAAGTGTGTGCCGCCGCCGCGGTCACAA
AGAGAAAAGCTCCACGGGAGAAAGTGAAGAGCTCCACGGAAGAAAGTGAGAAGGATGGGGAGTGT
GTATTATTGTAACAATAAATGTGGATAGGATACGGATGGGTGTAG
Found at i:85338 original size:22 final size:22
Alignment explanation
Indices: 85304--85354 Score: 75
Period size: 22 Copynumber: 2.3 Consensus size: 22
85294 CCGCGGTCAC
* *
85304 AAAGAGAAAAGCTCCACGGGAG
1 AAAGTGAAAAGCTCCACGGAAG
*
85326 AAAGTGAAGAGCTCCACGGAAG
1 AAAGTGAAAAGCTCCACGGAAG
85348 AAAGTGA
1 AAAGTGA
85355 GAAGGATGGG
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.45, C:0.16, G:0.31, T:0.08
Consensus pattern (22 bp):
AAAGTGAAAAGCTCCACGGAAG
Left flanking sequence: Indices 84804 -- 85303
GGGAGGTGGTGATAGCCCACGGGGTCTTGGCTAGTCATGCGAACCACTAGTCACACCCTGAGTGT
CACCCATAGTCTCACCAGTCTCACCAGTCTCACCAATCTCACCAGTCACCATTAGTCCCACTATA
GTCCCACAGTAGTCAGTGCTAAAAAAAGACACAAGGAGGATATACTAGAGAAGCCTACCACAGCA
AGATCGCAACCGGACGCTGGCGGGCTAATCGCAACCCCAGCAATCCCGTATAGGCCTGCCTTTGT
TCCCGAGCGTGCTCCAACCCTAAGTTGTCCCATAATACGTCAACCTAAAAATAGCAACATATTTT
GATGGGTCGATCGCGAGGCTAAATACAATAAAACGGCGCTGGTTGGCACAATTGCGGATAAAGAC
AGCCATGGTCGTTCTAGTGGTGCTTGTGTTGTTCTCCGCGTTGGTGTGGGCGTCCATGACGATGA
TTACCCCGTGCAATCTGCCCAAGTGTGTGCCGCCGCCGCGGTCAC
Right flanking sequence: Indices 85355 -- 85854
GAAGGATGGGGAGTGTGTATTATTGTAACAATAAATGTGGATAGGATACGGATGGGTGTAGGTGG
TGTTGGCGGTTGCAGCAAGGGTTGCAGAAAGGTTACGGAAGCGAGGTTATGGAGCGATGGTACTG
TTGGAGCAGTGGTAAGCGAGTAGTCAACGTGGGTGGGGAGTGGGAGAAATGGAAAAGGGGTTAAA
CAAATTGGTAGGACGTTGAATGAACTGGTAATGAGTTCCTGTGGATTGACTCGTAATGCTTAGAT
ATTCAAATTCGACTGTCAATTGAGTTCAATTGTCAAATCTCGACAAGTCGAGAGTATAGGTAGGT
TCACAACAGGTGGTACCTCTTTTATGAAGCACACCAGCCTATGTATAACCACATTCCGTCTCAAT
TGGGCTTCGTTGACTGTAACCTACTCTATCCATTAGTCACGTGTTCATACACGTGAATGCCACTC
ATGTGGTTCACATGTGTGGTCTATTTATAGTTTACTTTAGTCGAA
Found at i:86528 original size:22 final size:23
Alignment explanation
Indices: 86481--86571 Score: 98
Period size: 22 Copynumber: 4.1 Consensus size: 23
86471 TGAAAATAAC
*
86481 CACTAGCCACCCACTCGTGGCCA
1 CACTAGCCACCCACTCGTAGCCA
*
86504 CACTGGCCACCCAC-CGTAGCCA
1 CACTAGCCACCCACTCGTAGCCA
* *
86526 CACTAACCA-CCACTTGTAGCCA
1 CACTAGCCACCCACTCGTAGCCA
* * *
86548 CACAACCCA-CCACTTGTAGCCA
1 CACTAGCCACCCACTCGTAGCCA
86570 CA
1 CA
86572 GCCCACTACC
Statistics
Matches: 60, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
21 4 0.07
22 43 0.72
23 13 0.22
ACGTcount: A:0.27, C:0.46, G:0.13, T:0.13
Consensus pattern (23 bp):
CACTAGCCACCCACTCGTAGCCA
Left flanking sequence: Indices 85981 -- 86480
CACAATTTCTGGCACTGGCCACACTTGGGACAGCGGACGATCTTGATGGTGTGGCCATTGAACTC
GGGACAAGCACACCCACCTAGAATAAAACACATGGACTCTCTAAAAGCCAGGGTTTTCCCTAGTT
TTTATACCCAGTGGTGCTCGTCAAATCTAGATCTACAAATACGGAAGCCAGATCGTCCACCAGGG
GTAACCAACGGGCGCGTCTCCGGAATGGGCCGGTGAAGCTTACACATTCCCCGGAAGACGCTTCC
CGTGGCATGACCTGTCTGTACCCTTGGTGCATTAACGAGCATTCGGTGTTTGGTTGTCAAGGCTA
CGGATGGAGGAAAAGAGAGTGAAGGAAGAGAATGTGTGGGAAAGAAGGTGTGGGAGAAATACGTG
GAATGACAATGACGGAGAAGATGATCTAATGACGTTCCACGGGACGCTGAAGTGACACCCCGAGA
CCCTACGTTTCGTATCTGCGATCAGACGCGTGTATTGAAAATAAC
Right flanking sequence: Indices 86572 -- 87071
GCCCACTACCAGTACGGGAAGTACTTATCCACCAAGAACGTCAACTCATCGATAAAGTCTCCCCC
AGCTCTGTCCTTACTCTCGTCGTACACCAGCACCCGGTCGTCCTCGCCCGCCATGATCTGGGCGA
TCGGATCGGGCCCGTTCTTGATAATGGCCAGGTAGAAACCCGCGTCGTGGAACAGCACGTAGCAC
TCCCACTTGCGGTCGTCCACCCACATGGTCACGGTGCCGTCTCCGTACTCGATCTCCTTCCCGGG
ACGGGGTTTAAACACCGCCAGCGCCTCGAGGATTTTCTGGGTGGTGACCCCGTTGAACGGCTTGC
GGGCCTCGATCCAGTCAAACGCGTTGAGGAAAGGGGCCTCGAGCGCTCCGAGGAACGACGTCACC
ATCCTGAACGGGGCCGCGGGCCAGCTCCGGGCCCCAAACAACCCGCTGACAACCCAGTCGAGGGC
TCGGGGAACAAACCCGATGACGTCAATCACCATGGTAGGCACCAC
Found at i:87315 original size:22 final size:22
Alignment explanation
Indices: 87290--87343 Score: 58
Period size: 22 Copynumber: 2.5 Consensus size: 22
87280 AGGCAGGTAG
**
87290 GGAAAGAGG-CTGGAAAGAGGGT
1 GGAAAGAGGTC-GGAAAGAGGAC
87312 GG-AAGAAGGTCGGAAAGAGGAC
1 GGAAAG-AGGTCGGAAAGAGGAC
87334 GGAAAGAGGT
1 GGAAAGAGGT
87344 GGTTGGATGG
Statistics
Matches: 27, Mismatches: 2, Indels: 6
0.77 0.06 0.17
Matches are distributed among these distances:
21 3 0.11
22 20 0.74
23 4 0.15
ACGTcount: A:0.39, C:0.06, G:0.48, T:0.07
Consensus pattern (22 bp):
GGAAAGAGGTCGGAAAGAGGAC
Left flanking sequence: Indices 86790 -- 87289
CATGGTCACGGTGCCGTCTCCGTACTCGATCTCCTTCCCGGGACGGGGTTTAAACACCGCCAGCG
CCTCGAGGATTTTCTGGGTGGTGACCCCGTTGAACGGCTTGCGGGCCTCGATCCAGTCAAACGCG
TTGAGGAAAGGGGCCTCGAGCGCTCCGAGGAACGACGTCACCATCCTGAACGGGGCCGCGGGCCA
GCTCCGGGCCCCAAACAACCCGCTGACAACCCAGTCGAGGGCTCGGGGAACAAACCCGATGACGT
CAATCACCATGGTAGGCACCACCAACACCAGCTGCACAGCGATGCAGCAGAGCCAAAGGGGCACC
CGTGAGAGCTTGCCCAAGAGATCGGGGGCCACGGTGAACGTGGCCAACACCGCGACGATGACGAT
CAAGGGGGTGTTGTTGAAAGCGGATACCTTCGCGTCAGTCTCCTCCATCCTGGTGAAGAAATTTG
CTCAAAAGTGGTATTGTACGAGTTTATATGCGTAGAGGCAGGTAG
Right flanking sequence: Indices 87344 -- 87843
GGTTGGATGGCCGGGAGCTACTCGAGGGGGTGTAGAGAGGATATAAGAGGTCCCAGCCTAGCTCA
ACCCTATCCGGTATGTTCTCTGGTATGTTCTCTGGTATGTTTTAACGGGCCTACGGTTGGATAGT
ACGGAGAATCACCTTCCGATCCACCACCACCAAAGTGTCCCACTGGGTGACGCGCTGAGCCCTCG
AAAGTGTCTGACGTCGCGTAGACACCTGTGGAACAGTCACCGATGGCGTACGCAGCTGTCTAAAC
CCCGTAGCGACGGGTTGGCTGATCGGGTCGCTGATCAGGCCACGTGAATGACCAGCCACTCGTAT
CGGCTGATTACGCGAGCTTTGTGTCAGCTGGGCAGCTCGAGGAGCTGCAACGCGTTTGCAGCCAG
CGGGGCTTCGAACCACGAGATTGTGGCTTCACTGTACGACAAGATGGACTAACGGGCCTGAGACT
ACGGAGAGAAAAGAAACATGACAGACTTTGCTATGACCTAAACTA
Found at i:87435 original size:12 final size:12
Alignment explanation
Indices: 87418--87449 Score: 64
Period size: 12 Copynumber: 2.7 Consensus size: 12
87408 AACCCTATCC
87418 GGTATGTTCTCT
1 GGTATGTTCTCT
87430 GGTATGTTCTCT
1 GGTATGTTCTCT
87442 GGTATGTT
1 GGTATGTT
87450 TTAACGGGCC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.09, C:0.12, G:0.28, T:0.50
Consensus pattern (12 bp):
GGTATGTTCTCT
Left flanking sequence: Indices 86918 -- 87417
CGTTGAGGAAAGGGGCCTCGAGCGCTCCGAGGAACGACGTCACCATCCTGAACGGGGCCGCGGGC
CAGCTCCGGGCCCCAAACAACCCGCTGACAACCCAGTCGAGGGCTCGGGGAACAAACCCGATGAC
GTCAATCACCATGGTAGGCACCACCAACACCAGCTGCACAGCGATGCAGCAGAGCCAAAGGGGCA
CCCGTGAGAGCTTGCCCAAGAGATCGGGGGCCACGGTGAACGTGGCCAACACCGCGACGATGACG
ATCAAGGGGGTGTTGTTGAAAGCGGATACCTTCGCGTCAGTCTCCTCCATCCTGGTGAAGAAATT
TGCTCAAAAGTGGTATTGTACGAGTTTATATGCGTAGAGGCAGGTAGGGAAAGAGGCTGGAAAGA
GGGTGGAAGAAGGTCGGAAAGAGGACGGAAAGAGGTGGTTGGATGGCCGGGAGCTACTCGAGGGG
GTGTAGAGAGGATATAAGAGGTCCCAGCCTAGCTCAACCCTATCC
Right flanking sequence: Indices 87450 -- 87949
TTAACGGGCCTACGGTTGGATAGTACGGAGAATCACCTTCCGATCCACCACCACCAAAGTGTCCC
ACTGGGTGACGCGCTGAGCCCTCGAAAGTGTCTGACGTCGCGTAGACACCTGTGGAACAGTCACC
GATGGCGTACGCAGCTGTCTAAACCCCGTAGCGACGGGTTGGCTGATCGGGTCGCTGATCAGGCC
ACGTGAATGACCAGCCACTCGTATCGGCTGATTACGCGAGCTTTGTGTCAGCTGGGCAGCTCGAG
GAGCTGCAACGCGTTTGCAGCCAGCGGGGCTTCGAACCACGAGATTGTGGCTTCACTGTACGACA
AGATGGACTAACGGGCCTGAGACTACGGAGAGAAAAGAAACATGACAGACTTTGCTATGACCTAA
ACTAAAGTGTGTGAGCCCACACAAATTTCACACAAGCTCACACGAGTAACCGAAACATACCGAAA
TAAACCGAAACATACCAAACGTACCGAAACGAGTAGACCGAAACA
Found at i:87901 original size:10 final size:10
Alignment explanation
Indices: 87888--87934 Score: 60
Period size: 10 Copynumber: 4.8 Consensus size: 10
87878 CACACGAGTA
87888 ACCGAAACAT
1 ACCGAAACAT
* *
87898 ACCGAAATAA
1 ACCGAAACAT
87908 ACCGAAACAT
1 ACCGAAACAT
*
87918 ACC-AAACGT
1 ACCGAAACAT
87927 ACCGAAAC
1 ACCGAAAC
87935 GAGTAGACCG
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
9 8 0.26
10 23 0.74
ACGTcount: A:0.51, C:0.30, G:0.11, T:0.09
Consensus pattern (10 bp):
ACCGAAACAT
Left flanking sequence: Indices 87388 -- 87887
AAGAGGTCCCAGCCTAGCTCAACCCTATCCGGTATGTTCTCTGGTATGTTCTCTGGTATGTTTTA
ACGGGCCTACGGTTGGATAGTACGGAGAATCACCTTCCGATCCACCACCACCAAAGTGTCCCACT
GGGTGACGCGCTGAGCCCTCGAAAGTGTCTGACGTCGCGTAGACACCTGTGGAACAGTCACCGAT
GGCGTACGCAGCTGTCTAAACCCCGTAGCGACGGGTTGGCTGATCGGGTCGCTGATCAGGCCACG
TGAATGACCAGCCACTCGTATCGGCTGATTACGCGAGCTTTGTGTCAGCTGGGCAGCTCGAGGAG
CTGCAACGCGTTTGCAGCCAGCGGGGCTTCGAACCACGAGATTGTGGCTTCACTGTACGACAAGA
TGGACTAACGGGCCTGAGACTACGGAGAGAAAAGAAACATGACAGACTTTGCTATGACCTAAACT
AAAGTGTGTGAGCCCACACAAATTTCACACAAGCTCACACGAGTA
Right flanking sequence: Indices 87935 -- 88434
GAGTAGACCGAAACAAAACCACCGGAAGAAAACCGACCGAAAGAACCGAAAAGAAAGTAGAACCG
AAACTAATAAACCAAAAACAAGCACTAATTGACATTTTTCTCTGTTAATGGACTGTGCTTCTTCT
CCACTGGGCTGTGTTTCTCTCTCTGCTTCTCTGCCACTGGGCTATGCTTCTCCACTAGCTGAGTA
AACACCGCGAGCACGTCGCCCGAGACTATCTTCTCCTCGCCCTTGTCGCACACCACCGTGCCCTG
GGCCGACGGGGCTACGAACTGGCACACTCCGCCGCCTGAAAAGATCCCCAACGTGGGTTTCCCGT
TCCAGAACCGGCACTTCACATCCAAGCTGGCGTAGGTAATGCTGACGCCCCACTCGTCGAAATCT
ACACACTTGCCCGGGCCCGGTTGGAACACGGGCAAGCAGTGGAGGACCTCGGGCGTATATGAAGC
CAGTCTCGCCTTGTAAAGGGTGGTTAGTTCGCTAAGTTGGGTCTC
Found at i:87978 original size:15 final size:15
Alignment explanation
Indices: 87940--87979 Score: 55
Period size: 14 Copynumber: 2.7 Consensus size: 15
87930 GAAACGAGTA
*
87940 GACCGAAACAAAACC
1 GACCGAAAGAAAACC
*
87955 -ACCGGAAGAAAACC
1 GACCGAAAGAAAACC
87969 GACCGAAAGAA
1 GACCGAAAGAA
87980 CCGAAAAGAA
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
14 12 0.57
15 9 0.43
ACGTcount: A:0.53, C:0.28, G:0.20, T:0.00
Consensus pattern (15 bp):
GACCGAAAGAAAACC
Left flanking sequence: Indices 87440 -- 87939
CTGGTATGTTTTAACGGGCCTACGGTTGGATAGTACGGAGAATCACCTTCCGATCCACCACCACC
AAAGTGTCCCACTGGGTGACGCGCTGAGCCCTCGAAAGTGTCTGACGTCGCGTAGACACCTGTGG
AACAGTCACCGATGGCGTACGCAGCTGTCTAAACCCCGTAGCGACGGGTTGGCTGATCGGGTCGC
TGATCAGGCCACGTGAATGACCAGCCACTCGTATCGGCTGATTACGCGAGCTTTGTGTCAGCTGG
GCAGCTCGAGGAGCTGCAACGCGTTTGCAGCCAGCGGGGCTTCGAACCACGAGATTGTGGCTTCA
CTGTACGACAAGATGGACTAACGGGCCTGAGACTACGGAGAGAAAAGAAACATGACAGACTTTGC
TATGACCTAAACTAAAGTGTGTGAGCCCACACAAATTTCACACAAGCTCACACGAGTAACCGAAA
CATACCGAAATAAACCGAAACATACCAAACGTACCGAAACGAGTA
Right flanking sequence: Indices 87980 -- 88479
CCGAAAAGAAAGTAGAACCGAAACTAATAAACCAAAAACAAGCACTAATTGACATTTTTCTCTGT
TAATGGACTGTGCTTCTTCTCCACTGGGCTGTGTTTCTCTCTCTGCTTCTCTGCCACTGGGCTAT
GCTTCTCCACTAGCTGAGTAAACACCGCGAGCACGTCGCCCGAGACTATCTTCTCCTCGCCCTTG
TCGCACACCACCGTGCCCTGGGCCGACGGGGCTACGAACTGGCACACTCCGCCGCCTGAAAAGAT
CCCCAACGTGGGTTTCCCGTTCCAGAACCGGCACTTCACATCCAAGCTGGCGTAGGTAATGCTGA
CGCCCCACTCGTCGAAATCTACACACTTGCCCGGGCCCGGTTGGAACACGGGCAAGCAGTGGAGG
ACCTCGGGCGTATATGAAGCCAGTCTCGCCTTGTAAAGGGTGGTTAGTTCGCTAAGTTGGGTCTC
TATACGGTTGAGACTGTAGATGAGCGGCCTCTCCGCTCGGTGGGC
Found at i:93567 original size:18 final size:18
Alignment explanation
Indices: 93533--93567 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
93523 TTGCAGCGAT
*
93533 AAATGCGGTGATTAAATA
1 AAATGCGGTGATCAAATA
*
93551 AAATGCGGTGGTCAAAT
1 AAATGCGGTGATCAAAT
93568 CGAAAACCAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.40, C:0.09, G:0.26, T:0.26
Consensus pattern (18 bp):
AAATGCGGTGATCAAATA
Left flanking sequence: Indices 93033 -- 93532
TACCACTCGTAAAGTTGTGTCACCGAAGCTTGGCGAAGGTGTGAACAAATAGCATTGCCGGCCAA
GGAAATTTCCACAATGTTCAACAGTGTTAAAGTCTCAGTGGCCCAGTGCTGGGTGGGGTGGTTTC
AGCCTGACACACGTCAGGAAAGCGAAACAATACCCGCGTCGGTACCCGTACGACCTGACTAAAAA
TAGTGCCATATCGGGGTAACAGGTCCCCTGTCTAGTTGGAAGCAGCACGTGTGGCAAAAAAGGAG
CTCCAACTGCGTGTTGGAGCCGATGCAAGAGCCCGATGCGGGGCTTGAACCCGCAGCCTTGAGAT
TAAGAGTCTCACGCTCTACCGATTGAGCTAACCAGGCTTGATGGAGGGGGTCAGAAGACGATAAT
ATGATGGGGTATACAGCTGAGGTAAACAAAGGAGCGAGAGTGTCTTATTCCCTGTTCACTTTCTT
TGGTCTTACAAGTTTACGCAGCTTTCAGCACATATTTGCAGCGAT
Right flanking sequence: Indices 93568 -- 94067
CGAAAACCATTTGGTGTTGTGATGGAATAGAACCATTGGGTATTGTGATGGAATAGAAACCATTG
GGTATTGCAATGAAATAGAAAACATTGGGTATTGCAATGAAATGGAAACCATGGGTATTCTTAGA
TTAAAAATAAAAACCCTTGGTGTTCAAAAACCCTTGGTGTTCTCTTCGTGATTACTTGTATTAAT
CTATGGAGTTCCTTGAGTGTCGAACCAAGGAATCAGATGCATATGCTAGCCCCGAAGGGTTCGAG
TAGTCTCGAGCCATCACGGCTGGAGAACGCAGGCCGACTTCGTCTGCCATGCCTAAGAGTAAAAA
AATGGGTATTAAGAAGCAACAGTAACGCGTTGCTAGACAATATTGTCAGTTGAGTGATCAATTAA
GCGATCAGTTGGGTGATTGGGGTGGTGTCAACGGGGTCAGTGGAATAGCGGCTTGACCAGTGGTA
GCAATTCACGGGTTTGTCTCAGACCGGGTGATCGTGGTTTATAGC
Found at i:93601 original size:26 final size:27
Alignment explanation
Indices: 93571--93691 Score: 138
Period size: 27 Copynumber: 4.6 Consensus size: 27
93561 GTCAAATCGA
* *
93571 AAACCATTTGGTGTTGTGATGGAATAG
1 AAACCATTGGGTATTGTGATGGAATAG
93598 -AACCATTGGGTATTGTGATGGAATAG
1 AAACCATTGGGTATTGTGATGGAATAG
** *
93624 AAACCATTGGGTATTGCAATGAAATAG
1 AAACCATTGGGTATTGTGATGGAATAG
* ** * *
93651 AAAACATTGGGTATTGCAATGAAATGG
1 AAACCATTGGGTATTGTGATGGAATAG
93678 AAACCA-TGGGTATT
1 AAACCATTGGGTATT
93692 CTTAGATTAA
Statistics
Matches: 85, Mismatches: 8, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
26 32 0.38
27 53 0.62
ACGTcount: A:0.36, C:0.09, G:0.26, T:0.29
Consensus pattern (27 bp):
AAACCATTGGGTATTGTGATGGAATAG
Left flanking sequence: Indices 93071 -- 93570
GTGTGAACAAATAGCATTGCCGGCCAAGGAAATTTCCACAATGTTCAACAGTGTTAAAGTCTCAG
TGGCCCAGTGCTGGGTGGGGTGGTTTCAGCCTGACACACGTCAGGAAAGCGAAACAATACCCGCG
TCGGTACCCGTACGACCTGACTAAAAATAGTGCCATATCGGGGTAACAGGTCCCCTGTCTAGTTG
GAAGCAGCACGTGTGGCAAAAAAGGAGCTCCAACTGCGTGTTGGAGCCGATGCAAGAGCCCGATG
CGGGGCTTGAACCCGCAGCCTTGAGATTAAGAGTCTCACGCTCTACCGATTGAGCTAACCAGGCT
TGATGGAGGGGGTCAGAAGACGATAATATGATGGGGTATACAGCTGAGGTAAACAAAGGAGCGAG
AGTGTCTTATTCCCTGTTCACTTTCTTTGGTCTTACAAGTTTACGCAGCTTTCAGCACATATTTG
CAGCGATAAATGCGGTGATTAAATAAAATGCGGTGGTCAAATCGA
Right flanking sequence: Indices 93692 -- 94191
CTTAGATTAAAAATAAAAACCCTTGGTGTTCAAAAACCCTTGGTGTTCTCTTCGTGATTACTTGT
ATTAATCTATGGAGTTCCTTGAGTGTCGAACCAAGGAATCAGATGCATATGCTAGCCCCGAAGGG
TTCGAGTAGTCTCGAGCCATCACGGCTGGAGAACGCAGGCCGACTTCGTCTGCCATGCCTAAGAG
TAAAAAAATGGGTATTAAGAAGCAACAGTAACGCGTTGCTAGACAATATTGTCAGTTGAGTGATC
AATTAAGCGATCAGTTGGGTGATTGGGGTGGTGTCAACGGGGTCAGTGGAATAGCGGCTTGACCA
GTGGTAGCAATTCACGGGTTTGTCTCAGACCGGGTGATCGTGGTTTATAGCGTTGTCCGACTCGC
GGTTATCCGACTCGCGGTTGGCCGACTCGCGGTTTTCCGACTCCAGGATTAATCCAGCTCGCTTC
GTCTCAGAGGTGACACACTCACCTGCTCAGGGGGTGTTTCCACAC
Found at i:93636 original size:27 final size:27
Alignment explanation
Indices: 93593--93691 Score: 139
Period size: 27 Copynumber: 3.7 Consensus size: 27
93583 GTTGTGATGG
** *
93593 AATAG-AACCATTGGGTATTGTGATGG
1 AATAGAAACCATTGGGTATTGCAATGA
93619 AATAGAAACCATTGGGTATTGCAATGA
1 AATAGAAACCATTGGGTATTGCAATGA
*
93646 AATAGAAAACATTGGGTATTGCAATGA
1 AATAGAAACCATTGGGTATTGCAATGA
*
93673 AATGGAAACCA-TGGGTATT
1 AATAGAAACCATTGGGTATT
93692 CTTAGATTAA
Statistics
Matches: 66, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
26 13 0.20
27 53 0.80
ACGTcount: A:0.38, C:0.09, G:0.25, T:0.27
Consensus pattern (27 bp):
AATAGAAACCATTGGGTATTGCAATGA
Left flanking sequence: Indices 93093 -- 93592
GCCAAGGAAATTTCCACAATGTTCAACAGTGTTAAAGTCTCAGTGGCCCAGTGCTGGGTGGGGTG
GTTTCAGCCTGACACACGTCAGGAAAGCGAAACAATACCCGCGTCGGTACCCGTACGACCTGACT
AAAAATAGTGCCATATCGGGGTAACAGGTCCCCTGTCTAGTTGGAAGCAGCACGTGTGGCAAAAA
AGGAGCTCCAACTGCGTGTTGGAGCCGATGCAAGAGCCCGATGCGGGGCTTGAACCCGCAGCCTT
GAGATTAAGAGTCTCACGCTCTACCGATTGAGCTAACCAGGCTTGATGGAGGGGGTCAGAAGACG
ATAATATGATGGGGTATACAGCTGAGGTAAACAAAGGAGCGAGAGTGTCTTATTCCCTGTTCACT
TTCTTTGGTCTTACAAGTTTACGCAGCTTTCAGCACATATTTGCAGCGATAAATGCGGTGATTAA
ATAAAATGCGGTGGTCAAATCGAAAACCATTTGGTGTTGTGATGG
Right flanking sequence: Indices 93692 -- 94191
CTTAGATTAAAAATAAAAACCCTTGGTGTTCAAAAACCCTTGGTGTTCTCTTCGTGATTACTTGT
ATTAATCTATGGAGTTCCTTGAGTGTCGAACCAAGGAATCAGATGCATATGCTAGCCCCGAAGGG
TTCGAGTAGTCTCGAGCCATCACGGCTGGAGAACGCAGGCCGACTTCGTCTGCCATGCCTAAGAG
TAAAAAAATGGGTATTAAGAAGCAACAGTAACGCGTTGCTAGACAATATTGTCAGTTGAGTGATC
AATTAAGCGATCAGTTGGGTGATTGGGGTGGTGTCAACGGGGTCAGTGGAATAGCGGCTTGACCA
GTGGTAGCAATTCACGGGTTTGTCTCAGACCGGGTGATCGTGGTTTATAGCGTTGTCCGACTCGC
GGTTATCCGACTCGCGGTTGGCCGACTCGCGGTTTTCCGACTCCAGGATTAATCCAGCTCGCTTC
GTCTCAGAGGTGACACACTCACCTGCTCAGGGGGTGTTTCCACAC
Found at i:93728 original size:17 final size:17
Alignment explanation
Indices: 93706--93739 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
93696 GATTAAAAAT
93706 AAAAACCCTTGGTGTTC
1 AAAAACCCTTGGTGTTC
93723 AAAAACCCTTGGTGTTC
1 AAAAACCCTTGGTGTTC
93740 TCTTCGTGAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (17 bp):
AAAAACCCTTGGTGTTC
Left flanking sequence: Indices 93206 -- 93705
ACCCGTACGACCTGACTAAAAATAGTGCCATATCGGGGTAACAGGTCCCCTGTCTAGTTGGAAGC
AGCACGTGTGGCAAAAAAGGAGCTCCAACTGCGTGTTGGAGCCGATGCAAGAGCCCGATGCGGGG
CTTGAACCCGCAGCCTTGAGATTAAGAGTCTCACGCTCTACCGATTGAGCTAACCAGGCTTGATG
GAGGGGGTCAGAAGACGATAATATGATGGGGTATACAGCTGAGGTAAACAAAGGAGCGAGAGTGT
CTTATTCCCTGTTCACTTTCTTTGGTCTTACAAGTTTACGCAGCTTTCAGCACATATTTGCAGCG
ATAAATGCGGTGATTAAATAAAATGCGGTGGTCAAATCGAAAACCATTTGGTGTTGTGATGGAAT
AGAACCATTGGGTATTGTGATGGAATAGAAACCATTGGGTATTGCAATGAAATAGAAAACATTGG
GTATTGCAATGAAATGGAAACCATGGGTATTCTTAGATTAAAAAT
Right flanking sequence: Indices 93740 -- 94239
TCTTCGTGATTACTTGTATTAATCTATGGAGTTCCTTGAGTGTCGAACCAAGGAATCAGATGCAT
ATGCTAGCCCCGAAGGGTTCGAGTAGTCTCGAGCCATCACGGCTGGAGAACGCAGGCCGACTTCG
TCTGCCATGCCTAAGAGTAAAAAAATGGGTATTAAGAAGCAACAGTAACGCGTTGCTAGACAATA
TTGTCAGTTGAGTGATCAATTAAGCGATCAGTTGGGTGATTGGGGTGGTGTCAACGGGGTCAGTG
GAATAGCGGCTTGACCAGTGGTAGCAATTCACGGGTTTGTCTCAGACCGGGTGATCGTGGTTTAT
AGCGTTGTCCGACTCGCGGTTATCCGACTCGCGGTTGGCCGACTCGCGGTTTTCCGACTCCAGGA
TTAATCCAGCTCGCTTCGTCTCAGAGGTGACACACTCACCTGCTCAGGGGGTGTTTCCACACCGT
CTCGTGAACCACGTGCCGTTCTCACCAACCAATTGGTCAGAGGGC
Found at i:94092 original size:15 final size:15
Alignment explanation
Indices: 94072--94124 Score: 79
Period size: 15 Copynumber: 3.5 Consensus size: 15
94062 TATAGCGTTG
94072 TCCGACTCGCGGTTA
1 TCCGACTCGCGGTTA
*
94087 TCCGACTCGCGGTTG
1 TCCGACTCGCGGTTA
* *
94102 GCCGACTCGCGGTTT
1 TCCGACTCGCGGTTA
94117 TCCGACTC
1 TCCGACTC
94125 CAGGATTAAT
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 34 1.00
ACGTcount: A:0.09, C:0.36, G:0.28, T:0.26
Consensus pattern (15 bp):
TCCGACTCGCGGTTA
Left flanking sequence: Indices 93572 -- 94071
AACCATTTGGTGTTGTGATGGAATAGAACCATTGGGTATTGTGATGGAATAGAAACCATTGGGTA
TTGCAATGAAATAGAAAACATTGGGTATTGCAATGAAATGGAAACCATGGGTATTCTTAGATTAA
AAATAAAAACCCTTGGTGTTCAAAAACCCTTGGTGTTCTCTTCGTGATTACTTGTATTAATCTAT
GGAGTTCCTTGAGTGTCGAACCAAGGAATCAGATGCATATGCTAGCCCCGAAGGGTTCGAGTAGT
CTCGAGCCATCACGGCTGGAGAACGCAGGCCGACTTCGTCTGCCATGCCTAAGAGTAAAAAAATG
GGTATTAAGAAGCAACAGTAACGCGTTGCTAGACAATATTGTCAGTTGAGTGATCAATTAAGCGA
TCAGTTGGGTGATTGGGGTGGTGTCAACGGGGTCAGTGGAATAGCGGCTTGACCAGTGGTAGCAA
TTCACGGGTTTGTCTCAGACCGGGTGATCGTGGTTTATAGCGTTG
Right flanking sequence: Indices 94125 -- 94624
CAGGATTAATCCAGCTCGCTTCGTCTCAGAGGTGACACACTCACCTGCTCAGGGGGTGTTTCCAC
ACCGTCTCGTGAACCACGTGCCGTTCTCACCAACCAATTGGTCAGAGGGCATCTGGAGCACGACG
AGGGCATGGAAAAAAGCCCAAGAGAAGACAAAGCGAAGGAGTCATGGAAATGCGAAGGCGTCACG
GAAAACCGAAGGAGTCACGGGAACGGCGGGATCACGGTCGGTCTGTCAAGTGGTTGCATTATGCA
CGGAACTCGGTTAAAAAATAGCTGCATACGGTCAAAAAAATAACCCAAAAAACGTATAGCCAGTG
AAACCATAGTCTTCGAGCCATAAAAAAACCGGTAAACTGCGAGTAACTGCTAGCAACTGCTAGGA
ACTGCTAGTAAATTTCCAGCAACCGTAACCTTTCCCGTACCTTTCCGCAACACTCCTATCCCCGG
GTTAGCCCGACACCGAGACCCACGCCTATCATCGCCAACACAATC
Found at i:94109 original size:30 final size:30
Alignment explanation
Indices: 94068--94124 Score: 96
Period size: 30 Copynumber: 1.9 Consensus size: 30
94058 GGTTTATAGC
*
94068 GTTGTCCGACTCGCGGTTATCCGACTCGCG
1 GTTGGCCGACTCGCGGTTATCCGACTCGCG
*
94098 GTTGGCCGACTCGCGGTTTTCCGACTC
1 GTTGGCCGACTCGCGGTTATCCGACTC
94125 CAGGATTAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.09, C:0.33, G:0.30, T:0.28
Consensus pattern (30 bp):
GTTGGCCGACTCGCGGTTATCCGACTCGCG
Left flanking sequence: Indices 93568 -- 94067
CGAAAACCATTTGGTGTTGTGATGGAATAGAACCATTGGGTATTGTGATGGAATAGAAACCATTG
GGTATTGCAATGAAATAGAAAACATTGGGTATTGCAATGAAATGGAAACCATGGGTATTCTTAGA
TTAAAAATAAAAACCCTTGGTGTTCAAAAACCCTTGGTGTTCTCTTCGTGATTACTTGTATTAAT
CTATGGAGTTCCTTGAGTGTCGAACCAAGGAATCAGATGCATATGCTAGCCCCGAAGGGTTCGAG
TAGTCTCGAGCCATCACGGCTGGAGAACGCAGGCCGACTTCGTCTGCCATGCCTAAGAGTAAAAA
AATGGGTATTAAGAAGCAACAGTAACGCGTTGCTAGACAATATTGTCAGTTGAGTGATCAATTAA
GCGATCAGTTGGGTGATTGGGGTGGTGTCAACGGGGTCAGTGGAATAGCGGCTTGACCAGTGGTA
GCAATTCACGGGTTTGTCTCAGACCGGGTGATCGTGGTTTATAGC
Right flanking sequence: Indices 94125 -- 94624
CAGGATTAATCCAGCTCGCTTCGTCTCAGAGGTGACACACTCACCTGCTCAGGGGGTGTTTCCAC
ACCGTCTCGTGAACCACGTGCCGTTCTCACCAACCAATTGGTCAGAGGGCATCTGGAGCACGACG
AGGGCATGGAAAAAAGCCCAAGAGAAGACAAAGCGAAGGAGTCATGGAAATGCGAAGGCGTCACG
GAAAACCGAAGGAGTCACGGGAACGGCGGGATCACGGTCGGTCTGTCAAGTGGTTGCATTATGCA
CGGAACTCGGTTAAAAAATAGCTGCATACGGTCAAAAAAATAACCCAAAAAACGTATAGCCAGTG
AAACCATAGTCTTCGAGCCATAAAAAAACCGGTAAACTGCGAGTAACTGCTAGCAACTGCTAGGA
ACTGCTAGTAAATTTCCAGCAACCGTAACCTTTCCCGTACCTTTCCGCAACACTCCTATCCCCGG
GTTAGCCCGACACCGAGACCCACGCCTATCATCGCCAACACAATC
Found at i:94311 original size:19 final size:19
Alignment explanation
Indices: 94284--94339 Score: 76
Period size: 19 Copynumber: 2.9 Consensus size: 19
94274 AAGAGAAGAC
*
94284 AAAGCGAAGGAGTCATGGA
1 AAAGCGAAGGAGTCACGGA
* *
94303 AATGCGAAGGCGTCACGGA
1 AAAGCGAAGGAGTCACGGA
*
94322 AAACCGAAGGAGTCACGG
1 AAAGCGAAGGAGTCACGG
94340 GAACGGCGGG
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
19 31 1.00
ACGTcount: A:0.38, C:0.18, G:0.36, T:0.09
Consensus pattern (19 bp):
AAAGCGAAGGAGTCACGGA
Left flanking sequence: Indices 93784 -- 94283
GAACCAAGGAATCAGATGCATATGCTAGCCCCGAAGGGTTCGAGTAGTCTCGAGCCATCACGGCT
GGAGAACGCAGGCCGACTTCGTCTGCCATGCCTAAGAGTAAAAAAATGGGTATTAAGAAGCAACA
GTAACGCGTTGCTAGACAATATTGTCAGTTGAGTGATCAATTAAGCGATCAGTTGGGTGATTGGG
GTGGTGTCAACGGGGTCAGTGGAATAGCGGCTTGACCAGTGGTAGCAATTCACGGGTTTGTCTCA
GACCGGGTGATCGTGGTTTATAGCGTTGTCCGACTCGCGGTTATCCGACTCGCGGTTGGCCGACT
CGCGGTTTTCCGACTCCAGGATTAATCCAGCTCGCTTCGTCTCAGAGGTGACACACTCACCTGCT
CAGGGGGTGTTTCCACACCGTCTCGTGAACCACGTGCCGTTCTCACCAACCAATTGGTCAGAGGG
CATCTGGAGCACGACGAGGGCATGGAAAAAAGCCCAAGAGAAGAC
Right flanking sequence: Indices 94340 -- 94839
GAACGGCGGGATCACGGTCGGTCTGTCAAGTGGTTGCATTATGCACGGAACTCGGTTAAAAAATA
GCTGCATACGGTCAAAAAAATAACCCAAAAAACGTATAGCCAGTGAAACCATAGTCTTCGAGCCA
TAAAAAAACCGGTAAACTGCGAGTAACTGCTAGCAACTGCTAGGAACTGCTAGTAAATTTCCAGC
AACCGTAACCTTTCCCGTACCTTTCCGCAACACTCCTATCCCCGGGTTAGCCCGACACCGAGACC
CACGCCTATCATCGCCAACACAATCACCGTCCACACGATTCCAAGCACCAACAGCACCACCTTCT
GCACCTTCAGGTAGCGGCGGTTGACCAACTTCTCGCCGTAGCGCCCGCCGTAGTAGTACATCAGC
GAGTAGTACTGGCGCCCGGTGTTGGTGTTGTCCAACAACCCCAACGGCATCATGTAGAACAACGG
CACGATCACAAGCCCCATCACCATCACCAACGCCCACCGGGCCCA
Found at i:94499 original size:10 final size:10
Alignment explanation
Indices: 94484--94525 Score: 57
Period size: 10 Copynumber: 4.2 Consensus size: 10
94474 AAAACCGGTA
*
94484 AACTGCGAGT
1 AACTGCTAGT
*
94494 AACTGCTAGC
1 AACTGCTAGT
*
94504 AACTGCTAGG
1 AACTGCTAGT
94514 AACTGCTAGT
1 AACTGCTAGT
94524 AA
1 AA
94526 ATTTCCAGCA
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
10 28 1.00
ACGTcount: A:0.33, C:0.21, G:0.24, T:0.21
Consensus pattern (10 bp):
AACTGCTAGT
Left flanking sequence: Indices 93984 -- 94483
GTCAACGGGGTCAGTGGAATAGCGGCTTGACCAGTGGTAGCAATTCACGGGTTTGTCTCAGACCG
GGTGATCGTGGTTTATAGCGTTGTCCGACTCGCGGTTATCCGACTCGCGGTTGGCCGACTCGCGG
TTTTCCGACTCCAGGATTAATCCAGCTCGCTTCGTCTCAGAGGTGACACACTCACCTGCTCAGGG
GGTGTTTCCACACCGTCTCGTGAACCACGTGCCGTTCTCACCAACCAATTGGTCAGAGGGCATCT
GGAGCACGACGAGGGCATGGAAAAAAGCCCAAGAGAAGACAAAGCGAAGGAGTCATGGAAATGCG
AAGGCGTCACGGAAAACCGAAGGAGTCACGGGAACGGCGGGATCACGGTCGGTCTGTCAAGTGGT
TGCATTATGCACGGAACTCGGTTAAAAAATAGCTGCATACGGTCAAAAAAATAACCCAAAAAACG
TATAGCCAGTGAAACCATAGTCTTCGAGCCATAAAAAAACCGGTA
Right flanking sequence: Indices 94526 -- 95025
ATTTCCAGCAACCGTAACCTTTCCCGTACCTTTCCGCAACACTCCTATCCCCGGGTTAGCCCGAC
ACCGAGACCCACGCCTATCATCGCCAACACAATCACCGTCCACACGATTCCAAGCACCAACAGCA
CCACCTTCTGCACCTTCAGGTAGCGGCGGTTGACCAACTTCTCGCCGTAGCGCCCGCCGTAGTAG
TACATCAGCGAGTAGTACTGGCGCCCGGTGTTGGTGTTGTCCAACAACCCCAACGGCATCATGTA
GAACAACGGCACGATCACAAGCCCCATCACCATCACCAACGCCCACCGGGCCCAGCCAAAGTACT
TGGTTTCTTGGCCGTACCCGGGCTCGGACCACCCCTTCTCCAACCCCAGGAGGTCCAACCCAAAG
TGGTCGGCCCCGGGCAGGTCAAACATCCGCTCGTGCAGCAGCTGCGCCAGCAACCGGTCCGAGAG
CACCAAGGTGGCAGGGACCTCGGGCACGAGCGGCAGCGGCGCCGG
Found at i:95539 original size:9 final size:9
Alignment explanation
Indices: 95525--95549 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
95515 CACGTTGCGG
95525 AGCAGGTCC
1 AGCAGGTCC
95534 AGCAGGTCC
1 AGCAGGTCC
95543 AGCAGGT
1 AGCAGGT
95550 ACTGCGGGCG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.24, C:0.28, G:0.36, T:0.12
Consensus pattern (9 bp):
AGCAGGTCC
Left flanking sequence: Indices 95025 -- 95524
GAGCGAGCTTAGTCAGCGGGGTCAGCGTCGAGGTCGGGAGGGGCGGGAGCGCCTGCGACGGCAGC
AGCAGCCACAGCGCCAGCTCGGGGCCCACCCCGCCGGGGCGGGGCAACGACGGCGCCCCCTGCGG
GGTCAGCCCCAGCCCCAGCAGCCCGCCGTGGGGCGAGGGCGTCAGCGCCGGGTAGTGTGCCACCG
CGGGCGGCGGCGGAGGGAGCGAGTCGCTGGCACCGGCACCAACACCGCGGTTCTGAGGAGTGTGT
TCGAGAGGCACCTCCTCCTCGCCGTGAGGCACCGGCGGGAGGCCCTTCTCGGGAGGCACCACCCC
GTGCACCGGGGCGTCGCCGTAGTGCGCGTCCTGGGTGTGCGCGTGCACCGGCACCTCGCCCTCGC
GCCCCACCGCCGCCGCAAGCGCCGCGCCCAGCGCCGGGGCCACCGTGCGCGACGCGGTGCGCGCG
TGCCCCGGGGCCTCGGGCAGCTGGGGGGTGTCCACCACGTTGCGG
Right flanking sequence: Indices 95550 -- 96049
ACTGCGGGCGGTGCTGGGGCTGGTGCAGCTGCGCCAGGGTGCGGTGGTGCTCGTACACCGACCAC
CGCTGGTTCAGCTCGTCGAAGTCGCGGTCCGCCACCTTGTACACGGTGACGGGGAGCTGGTTGTC
GGCGTCGATGCCCGCGGTGAGGTCGACGTCGGTGCTGCGGGCGTCGTCGAGCGAGAACTTGAGCG
CCAGCGGCACGGTGGGCACCGAGCGCCGGGCCAGCGCCACCGCGGCCGCCGCCAGGGCGAGCCCC
GTGCCGGCAGCGGGGCCGGCGGAGGAGGAGGGAGGAGTGGAGGTGGCGGAGGTGGCGGAGGTGGC
AGGAGTGTGGGAGGGGACGGGAGGGTGCTGTGTGCCTGGTGTACCAGCTGTGCCAGGTGTGCCAG
GTTGGCCTAAAGGTTGACCAGTCTGTGCCAGTTGACTACCAGTCTGTGCCAGTTGGGCATTAGGT
TGGGATGGTAGAGTGGCTCCTTGGGTGGCTGCCTCTTTGGTCTGG
Found at i:95862 original size:9 final size:9
Alignment explanation
Indices: 95848--95884 Score: 56
Period size: 9 Copynumber: 3.9 Consensus size: 9
95838 AGGGAGGAGT
95848 GGAGGTGGC
1 GGAGGTGGC
95857 GGAGGTGGC
1 GGAGGTGGC
95866 GGAGGTGGC
1 GGAGGTGGC
95875 AGGAGTGTGG
1 -GGAG-GTGG
95885 GAGGGGACGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
9 18 0.69
10 4 0.15
11 4 0.15
ACGTcount: A:0.14, C:0.08, G:0.65, T:0.14
Consensus pattern (9 bp):
GGAGGTGGC
Left flanking sequence: Indices 95348 -- 95847
CCGTGCACCGGGGCGTCGCCGTAGTGCGCGTCCTGGGTGTGCGCGTGCACCGGCACCTCGCCCTC
GCGCCCCACCGCCGCCGCAAGCGCCGCGCCCAGCGCCGGGGCCACCGTGCGCGACGCGGTGCGCG
CGTGCCCCGGGGCCTCGGGCAGCTGGGGGGTGTCCACCACGTTGCGGAGCAGGTCCAGCAGGTCC
AGCAGGTACTGCGGGCGGTGCTGGGGCTGGTGCAGCTGCGCCAGGGTGCGGTGGTGCTCGTACAC
CGACCACCGCTGGTTCAGCTCGTCGAAGTCGCGGTCCGCCACCTTGTACACGGTGACGGGGAGCT
GGTTGTCGGCGTCGATGCCCGCGGTGAGGTCGACGTCGGTGCTGCGGGCGTCGTCGAGCGAGAAC
TTGAGCGCCAGCGGCACGGTGGGCACCGAGCGCCGGGCCAGCGCCACCGCGGCCGCCGCCAGGGC
GAGCCCCGTGCCGGCAGCGGGGCCGGCGGAGGAGGAGGGAGGAGT
Right flanking sequence: Indices 95885 -- 96384
GAGGGGACGGGAGGGTGCTGTGTGCCTGGTGTACCAGCTGTGCCAGGTGTGCCAGGTTGGCCTAA
AGGTTGACCAGTCTGTGCCAGTTGACTACCAGTCTGTGCCAGTTGGGCATTAGGTTGGGATGGTA
GAGTGGCTCCTTGGGTGGCTGCCTCTTTGGTCTGGGCCCCTGGCTGTGCCTGGGCCCCTGGCTGT
GCCGCGCGCGCACCCACCATCGCCACCCCAGCACCCACCCCGACCTCGACCTCGTCGTCCTCGTA
GTAGTTCTCGAGCCGCAGCAACAACTCGCCCAGCGACATCAGCAGCCGCATCGTGTCCCGCTTCG
GGTCCTCCAACCCGGCATCGATCAGCAGGAACCGGAGCATCAGCGGCGACCGCGGCTGGGAGTCG
CCCGCGAGCTCGCCCAGCACCACCAGCGCCCGGTTGAGCAGCTCCGCCAGCTCGGGGCGCCCCGT
GCGCGGGGTGTTGTGCAGCAGCACGTCGGGCTCCGGGAGCCGGAG
Found at i:95928 original size:18 final size:18
Alignment explanation
Indices: 95905--95939 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
95895 GAGGGTGCTG
*
95905 TGTGCCTGGTGTACCAGC
1 TGTGCCAGGTGTACCAGC
*
95923 TGTGCCAGGTGTGCCAG
1 TGTGCCAGGTGTACCAG
95940 GTTGGCCTAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.11, C:0.26, G:0.37, T:0.26
Consensus pattern (18 bp):
TGTGCCAGGTGTACCAGC
Left flanking sequence: Indices 95405 -- 95904
TCGCCCTCGCGCCCCACCGCCGCCGCAAGCGCCGCGCCCAGCGCCGGGGCCACCGTGCGCGACGC
GGTGCGCGCGTGCCCCGGGGCCTCGGGCAGCTGGGGGGTGTCCACCACGTTGCGGAGCAGGTCCA
GCAGGTCCAGCAGGTACTGCGGGCGGTGCTGGGGCTGGTGCAGCTGCGCCAGGGTGCGGTGGTGC
TCGTACACCGACCACCGCTGGTTCAGCTCGTCGAAGTCGCGGTCCGCCACCTTGTACACGGTGAC
GGGGAGCTGGTTGTCGGCGTCGATGCCCGCGGTGAGGTCGACGTCGGTGCTGCGGGCGTCGTCGA
GCGAGAACTTGAGCGCCAGCGGCACGGTGGGCACCGAGCGCCGGGCCAGCGCCACCGCGGCCGCC
GCCAGGGCGAGCCCCGTGCCGGCAGCGGGGCCGGCGGAGGAGGAGGGAGGAGTGGAGGTGGCGGA
GGTGGCGGAGGTGGCAGGAGTGTGGGAGGGGACGGGAGGGTGCTG
Right flanking sequence: Indices 95940 -- 96439
GTTGGCCTAAAGGTTGACCAGTCTGTGCCAGTTGACTACCAGTCTGTGCCAGTTGGGCATTAGGT
TGGGATGGTAGAGTGGCTCCTTGGGTGGCTGCCTCTTTGGTCTGGGCCCCTGGCTGTGCCTGGGC
CCCTGGCTGTGCCGCGCGCGCACCCACCATCGCCACCCCAGCACCCACCCCGACCTCGACCTCGT
CGTCCTCGTAGTAGTTCTCGAGCCGCAGCAACAACTCGCCCAGCGACATCAGCAGCCGCATCGTG
TCCCGCTTCGGGTCCTCCAACCCGGCATCGATCAGCAGGAACCGGAGCATCAGCGGCGACCGCGG
CTGGGAGTCGCCCGCGAGCTCGCCCAGCACCACCAGCGCCCGGTTGAGCAGCTCCGCCAGCTCGG
GGCGCCCCGTGCGCGGGGTGTTGTGCAGCAGCACGTCGGGCTCCGGGAGCCGGAGGTCCAGCTCG
TCCGTCAGCCCCAGGTGGCGGTTGCCGGGGGTGTGCTCGGGGTGG
Found at i:95975 original size:18 final size:19
Alignment explanation
Indices: 95952--95994 Score: 61
Period size: 21 Copynumber: 2.2 Consensus size: 19
95942 TGGCCTAAAG
95952 GTTG-ACCAGTCTGTGCCA
1 GTTGAACCAGTCTGTGCCA
95970 GTTGACTACCAGTCTGTGCCA
1 GTTGA--ACCAGTCTGTGCCA
95991 GTTG
1 GTTG
95995 GGCATTAGGT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 4 0.18
21 18 0.82
ACGTcount: A:0.16, C:0.26, G:0.28, T:0.30
Consensus pattern (19 bp):
GTTGAACCAGTCTGTGCCA
Left flanking sequence: Indices 95452 -- 95951
GGCCACCGTGCGCGACGCGGTGCGCGCGTGCCCCGGGGCCTCGGGCAGCTGGGGGGTGTCCACCA
CGTTGCGGAGCAGGTCCAGCAGGTCCAGCAGGTACTGCGGGCGGTGCTGGGGCTGGTGCAGCTGC
GCCAGGGTGCGGTGGTGCTCGTACACCGACCACCGCTGGTTCAGCTCGTCGAAGTCGCGGTCCGC
CACCTTGTACACGGTGACGGGGAGCTGGTTGTCGGCGTCGATGCCCGCGGTGAGGTCGACGTCGG
TGCTGCGGGCGTCGTCGAGCGAGAACTTGAGCGCCAGCGGCACGGTGGGCACCGAGCGCCGGGCC
AGCGCCACCGCGGCCGCCGCCAGGGCGAGCCCCGTGCCGGCAGCGGGGCCGGCGGAGGAGGAGGG
AGGAGTGGAGGTGGCGGAGGTGGCGGAGGTGGCAGGAGTGTGGGAGGGGACGGGAGGGTGCTGTG
TGCCTGGTGTACCAGCTGTGCCAGGTGTGCCAGGTTGGCCTAAAG
Right flanking sequence: Indices 95995 -- 96494
GGCATTAGGTTGGGATGGTAGAGTGGCTCCTTGGGTGGCTGCCTCTTTGGTCTGGGCCCCTGGCT
GTGCCTGGGCCCCTGGCTGTGCCGCGCGCGCACCCACCATCGCCACCCCAGCACCCACCCCGACC
TCGACCTCGTCGTCCTCGTAGTAGTTCTCGAGCCGCAGCAACAACTCGCCCAGCGACATCAGCAG
CCGCATCGTGTCCCGCTTCGGGTCCTCCAACCCGGCATCGATCAGCAGGAACCGGAGCATCAGCG
GCGACCGCGGCTGGGAGTCGCCCGCGAGCTCGCCCAGCACCACCAGCGCCCGGTTGAGCAGCTCC
GCCAGCTCGGGGCGCCCCGTGCGCGGGGTGTTGTGCAGCAGCACGTCGGGCTCCGGGAGCCGGAG
GTCCAGCTCGTCCGTCAGCCCCAGGTGGCGGTTGCCGGGGGTGTGCTCGGGGTGGGGCGGGGCGG
GCTGGGGCAACGCCACCAGCACCGGGTCCAACCGGTGCGCGGCGG
Found at i:96069 original size:18 final size:18
Alignment explanation
Indices: 96046--96082 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
96036 CCTCTTTGGT
96046 CTGGGCCCCTGGCTGTGC
1 CTGGGCCCCTGGCTGTGC
96064 CTGGGCCCCTGGCTGTGC
1 CTGGGCCCCTGGCTGTGC
96082 C
1 C
96083 GCGCGCGCAC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.00, C:0.41, G:0.38, T:0.22
Consensus pattern (18 bp):
CTGGGCCCCTGGCTGTGC
Left flanking sequence: Indices 95546 -- 96045
AGGTACTGCGGGCGGTGCTGGGGCTGGTGCAGCTGCGCCAGGGTGCGGTGGTGCTCGTACACCGA
CCACCGCTGGTTCAGCTCGTCGAAGTCGCGGTCCGCCACCTTGTACACGGTGACGGGGAGCTGGT
TGTCGGCGTCGATGCCCGCGGTGAGGTCGACGTCGGTGCTGCGGGCGTCGTCGAGCGAGAACTTG
AGCGCCAGCGGCACGGTGGGCACCGAGCGCCGGGCCAGCGCCACCGCGGCCGCCGCCAGGGCGAG
CCCCGTGCCGGCAGCGGGGCCGGCGGAGGAGGAGGGAGGAGTGGAGGTGGCGGAGGTGGCGGAGG
TGGCAGGAGTGTGGGAGGGGACGGGAGGGTGCTGTGTGCCTGGTGTACCAGCTGTGCCAGGTGTG
CCAGGTTGGCCTAAAGGTTGACCAGTCTGTGCCAGTTGACTACCAGTCTGTGCCAGTTGGGCATT
AGGTTGGGATGGTAGAGTGGCTCCTTGGGTGGCTGCCTCTTTGGT
Right flanking sequence: Indices 96083 -- 96582
GCGCGCGCACCCACCATCGCCACCCCAGCACCCACCCCGACCTCGACCTCGTCGTCCTCGTAGTA
GTTCTCGAGCCGCAGCAACAACTCGCCCAGCGACATCAGCAGCCGCATCGTGTCCCGCTTCGGGT
CCTCCAACCCGGCATCGATCAGCAGGAACCGGAGCATCAGCGGCGACCGCGGCTGGGAGTCGCCC
GCGAGCTCGCCCAGCACCACCAGCGCCCGGTTGAGCAGCTCCGCCAGCTCGGGGCGCCCCGTGCG
CGGGGTGTTGTGCAGCAGCACGTCGGGCTCCGGGAGCCGGAGGTCCAGCTCGTCCGTCAGCCCCA
GGTGGCGGTTGCCGGGGGTGTGCTCGGGGTGGGGCGGGGCGGGCTGGGGCAACGCCACCAGCACC
GGGTCCAACCGGTGCGCGGCGGCGCGGAACAGCAGCAGCTTCAGCAGCAGCGACCCCAGCAGCCG
GGCGGCGTCGGGCAGCGCCACCGAGCGCGGGGCGCCGTGGGCGGC
Found at i:97200 original size:11 final size:11
Alignment explanation
Indices: 97167--97192 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
97157 AGACTCTAGT
97167 GGTGAACCGAG
1 GGTGAACCGAG
97178 GGTGAACCGAG
1 GGTGAACCGAG
97189 GGTG
1 GGTG
97193 GACTGAGGTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.23, C:0.15, G:0.50, T:0.12
Consensus pattern (11 bp):
GGTGAACCGAG
Left flanking sequence: Indices 96667 -- 97166
CGCGGCGACGGCGGGGGCGCCCTCGTCAAACTCCTCGGAGAAGACAAACGTCCCCGGGACGGTGG
CGGTCAGCTGGCGCTCGTACTCGATGAGGAGCAGCAGGATCTCGTCCAGGCCCACCAGGAGCCGT
GCCAGGTCGTCCAGCAGCGTGTCGGCAAAGTCGTCGACCAGGAGCGGCTTGTGCTCGGTGGTGAG
CACCGGGTGCGGCTCCAGCACCTGGGGCGGGGCGGGGTCGACAAGCTTGTCACGGGAGCGGGTCA
ACTTCTGGTGGAGGGTCCCGAGGAGCAGTTTGCGCAGCTCCGTCAGCTGGAGCAGCAGGTGGGAC
GGGTTGGCGCCGTAGGGGCGCGGGGGCGACGGGTGGTCGTCGGGGGGATGTGACATGGGGGGGAA
GTATGGGGGGGGGGGGGAGGGTTGTGGAATGGGAGGAGTGTCCTGAAGAGGGGTGTCCTCTGATG
TGGGAGGAGTGTCCTCTAGGGGGGAGGTTGGGAGTAGACTCTAGT
Right flanking sequence: Indices 97193 -- 97692
GACTGAGGTGACAGGTTCTGTGGATGGCTGAACCTGGATCTGTTAAGTGTACCTCTGTGCTTTCT
CTGGTGCCTCTGGTGCTTCCTCTGCTTCCTCTGCTTCCTCTGGTACTCTTTGTAGGTCGTACCGG
TGACTTCCTCTGGTACTTTCTTTAGTACCTCTGACTCTTCTGTCTCAGATCAATCGAGGTTGCGA
TGACAGCGGAGGCACGAGGGTCACGGAGAGCTTATAGTCTCTGGGTTGGTGTCTCGGGCTGTTGC
CTCGGGGTGTTTTGTTGTCTTGGTTGCCTGGACCACGGCCAATGTAACGGGGGCTTGCTGGGACG
AGAGGTGCTCCGGTGCTGATGAGGTGTAGCCGTGCAACGCGAAAGGTTTTTCGGGGAAAAGCAAC
GAGAACCGGGGGCACAAACGAGCGACTAGAGTGGGAAATGCACTGCCTCCGGGGAACTGGGATCA
ACCGCGATAAGATGGGGTCCCTTCCTGTTTTTCTCTGAGGATTTA
Found at i:97275 original size:21 final size:21
Alignment explanation
Indices: 97244--97290 Score: 60
Period size: 21 Copynumber: 2.3 Consensus size: 21
97234 GTTAAGTGTA
* *
97244 CCTCT-GTGCTTTCTCTGGTG
1 CCTCTGGTGCTTCCTCTGCTG
*
97264 CCTCTGGTGCTTCCTCTGCTT
1 CCTCTGGTGCTTCCTCTGCTG
97285 CCTCTG
1 CCTCTG
97291 CTTCCTCTGG
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
20 5 0.22
21 18 0.78
ACGTcount: A:0.00, C:0.36, G:0.21, T:0.43
Consensus pattern (21 bp):
CCTCTGGTGCTTCCTCTGCTG
Left flanking sequence: Indices 96744 -- 97243
GCTCGTACTCGATGAGGAGCAGCAGGATCTCGTCCAGGCCCACCAGGAGCCGTGCCAGGTCGTCC
AGCAGCGTGTCGGCAAAGTCGTCGACCAGGAGCGGCTTGTGCTCGGTGGTGAGCACCGGGTGCGG
CTCCAGCACCTGGGGCGGGGCGGGGTCGACAAGCTTGTCACGGGAGCGGGTCAACTTCTGGTGGA
GGGTCCCGAGGAGCAGTTTGCGCAGCTCCGTCAGCTGGAGCAGCAGGTGGGACGGGTTGGCGCCG
TAGGGGCGCGGGGGCGACGGGTGGTCGTCGGGGGGATGTGACATGGGGGGGAAGTATGGGGGGGG
GGGGGAGGGTTGTGGAATGGGAGGAGTGTCCTGAAGAGGGGTGTCCTCTGATGTGGGAGGAGTGT
CCTCTAGGGGGGAGGTTGGGAGTAGACTCTAGTGGTGAACCGAGGGTGAACCGAGGGTGGACTGA
GGTGACAGGTTCTGTGGATGGCTGAACCTGGATCTGTTAAGTGTA
Right flanking sequence: Indices 97291 -- 97790
CTTCCTCTGGTACTCTTTGTAGGTCGTACCGGTGACTTCCTCTGGTACTTTCTTTAGTACCTCTG
ACTCTTCTGTCTCAGATCAATCGAGGTTGCGATGACAGCGGAGGCACGAGGGTCACGGAGAGCTT
ATAGTCTCTGGGTTGGTGTCTCGGGCTGTTGCCTCGGGGTGTTTTGTTGTCTTGGTTGCCTGGAC
CACGGCCAATGTAACGGGGGCTTGCTGGGACGAGAGGTGCTCCGGTGCTGATGAGGTGTAGCCGT
GCAACGCGAAAGGTTTTTCGGGGAAAAGCAACGAGAACCGGGGGCACAAACGAGCGACTAGAGTG
GGAAATGCACTGCCTCCGGGGAACTGGGATCAACCGCGATAAGATGGGGTCCCTTCCTGTTTTTC
TCTGAGGATTTAGCCGGCGCACTACGCCCGCCGTCTCCAGCGCTCCCCCGACACCCGCCATTGTT
GTGCCGGATCGGGTGCGGTGAGGTGCATATGTCGGCCGAAAACAG
Found at i:97283 original size:9 final size:9
Alignment explanation
Indices: 97271--97299 Score: 58
Period size: 9 Copynumber: 3.2 Consensus size: 9
97261 GTGCCTCTGG
97271 TGCTTCCTC
1 TGCTTCCTC
97280 TGCTTCCTC
1 TGCTTCCTC
97289 TGCTTCCTC
1 TGCTTCCTC
97298 TG
1 TG
97300 GTACTCTTTG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.00, C:0.41, G:0.14, T:0.45
Consensus pattern (9 bp):
TGCTTCCTC
Left flanking sequence: Indices 96771 -- 97270
TCTCGTCCAGGCCCACCAGGAGCCGTGCCAGGTCGTCCAGCAGCGTGTCGGCAAAGTCGTCGACC
AGGAGCGGCTTGTGCTCGGTGGTGAGCACCGGGTGCGGCTCCAGCACCTGGGGCGGGGCGGGGTC
GACAAGCTTGTCACGGGAGCGGGTCAACTTCTGGTGGAGGGTCCCGAGGAGCAGTTTGCGCAGCT
CCGTCAGCTGGAGCAGCAGGTGGGACGGGTTGGCGCCGTAGGGGCGCGGGGGCGACGGGTGGTCG
TCGGGGGGATGTGACATGGGGGGGAAGTATGGGGGGGGGGGGGAGGGTTGTGGAATGGGAGGAGT
GTCCTGAAGAGGGGTGTCCTCTGATGTGGGAGGAGTGTCCTCTAGGGGGGAGGTTGGGAGTAGAC
TCTAGTGGTGAACCGAGGGTGAACCGAGGGTGGACTGAGGTGACAGGTTCTGTGGATGGCTGAAC
CTGGATCTGTTAAGTGTACCTCTGTGCTTTCTCTGGTGCCTCTGG
Right flanking sequence: Indices 97300 -- 97799
GTACTCTTTGTAGGTCGTACCGGTGACTTCCTCTGGTACTTTCTTTAGTACCTCTGACTCTTCTG
TCTCAGATCAATCGAGGTTGCGATGACAGCGGAGGCACGAGGGTCACGGAGAGCTTATAGTCTCT
GGGTTGGTGTCTCGGGCTGTTGCCTCGGGGTGTTTTGTTGTCTTGGTTGCCTGGACCACGGCCAA
TGTAACGGGGGCTTGCTGGGACGAGAGGTGCTCCGGTGCTGATGAGGTGTAGCCGTGCAACGCGA
AAGGTTTTTCGGGGAAAAGCAACGAGAACCGGGGGCACAAACGAGCGACTAGAGTGGGAAATGCA
CTGCCTCCGGGGAACTGGGATCAACCGCGATAAGATGGGGTCCCTTCCTGTTTTTCTCTGAGGAT
TTAGCCGGCGCACTACGCCCGCCGTCTCCAGCGCTCCCCCGACACCCGCCATTGTTGTGCCGGAT
CGGGTGCGGTGAGGTGCATATGTCGGCCGAAAACAGACGAGAGGT
Found at i:98108 original size:11 final size:11
Alignment explanation
Indices: 98092--98119 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
98082 GGGTGGGGGC
98092 GTGGAGGCGTA
1 GTGGAGGCGTA
98103 GTGGAGGCGTA
1 GTGGAGGCGTA
98114 GTGGAG
1 GTGGAG
98120 AGGTGCTGGG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.18, C:0.07, G:0.57, T:0.18
Consensus pattern (11 bp):
GTGGAGGCGTA
Left flanking sequence: Indices 97592 -- 98091
GGGCACAAACGAGCGACTAGAGTGGGAAATGCACTGCCTCCGGGGAACTGGGATCAACCGCGATA
AGATGGGGTCCCTTCCTGTTTTTCTCTGAGGATTTAGCCGGCGCACTACGCCCGCCGTCTCCAGC
GCTCCCCCGACACCCGCCATTGTTGTGCCGGATCGGGTGCGGTGAGGTGCATATGTCGGCCGAAA
ACAGACGAGAGGTAAACACGAGGTGCCGGGAGGTGCACCCCAGAGGTTGCGGTGCTCGCGGGCGC
GGTGCGGGCTACGGGGTGCGTGTGCTCCGCGGGGCCGCGGTGGTTGCTCCCGTGGGCGAGAACCG
GTCCTGGTTAAGAACGTGGACTCGAAGGGGGTTGCTGTGATGCCCGTCAACGGCTAGATACACAC
CGACGTTATTTTTTCGTCACCTGGCGCCACGGTGGATGGCCCGACACGAGCGCGAGAAGGTGAAC
AAGAGGCTGGCGGCTTAGTGGGGCAATGGCGTGGTGGGTGGGGGC
Right flanking sequence: Indices 98120 -- 98619
AGGTGCTGGGGGGTGTAGTGCTGGAGGTGTAGTGCTGGGAGGTGTAGTGCTGGTGCTACGGCTAG
GTGGCTACGGTAACGTGATCTGGGCTAGACGAGATCGTCGTTCCAAATAGGAAGAGAATGTGGCT
ACAGCTTGTGGCTACAGGTGGATGCGATTGTAGTAGTGGTAGTGGAAATGTGGTAGTGGTTGTGG
TTTGTGGTAGTGGTAGTGGTAGTGGGGACAATGACCTGGTGAAACTGTCGTGAAACTAGTTTAAA
TCGTGTTTGTTTCGGTGGTTGTTTCGGTGTGGTTTCGGTGTAAAAAAGGCTGTTTCTATGGAGCC
ATTGTGCCAACTTTGTAGCCTATGTAGCCTATGTAGCTTAAATACATACATGGATCCCTCAGGCC
CATTGTTGGCCGTATTGTGGAGACAATGGCAGTGGGCAACAATAGGCGGTGGATCCGCTGGCGGG
GGTTTGTGAAGACCGGTGCCTGCCTGCCAAACCTTATTTGTAGGG
Found at i:98142 original size:15 final size:15
Alignment explanation
Indices: 98122--98172 Score: 86
Period size: 15 Copynumber: 3.5 Consensus size: 15
98112 TAGTGGAGAG
*
98122 GTGCTGGGGGGTGTA
1 GTGCTGGGAGGTGTA
98137 GTGCT-GGAGGTGTA
1 GTGCTGGGAGGTGTA
98151 GTGCTGGGAGGTGTA
1 GTGCTGGGAGGTGTA
98166 GTGCTGG
1 GTGCTGG
98173 TGCTACGGCT
Statistics
Matches: 34, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
14 13 0.38
15 21 0.62
ACGTcount: A:0.10, C:0.08, G:0.55, T:0.27
Consensus pattern (15 bp):
GTGCTGGGAGGTGTA
Left flanking sequence: Indices 97622 -- 98121
GCACTGCCTCCGGGGAACTGGGATCAACCGCGATAAGATGGGGTCCCTTCCTGTTTTTCTCTGAG
GATTTAGCCGGCGCACTACGCCCGCCGTCTCCAGCGCTCCCCCGACACCCGCCATTGTTGTGCCG
GATCGGGTGCGGTGAGGTGCATATGTCGGCCGAAAACAGACGAGAGGTAAACACGAGGTGCCGGG
AGGTGCACCCCAGAGGTTGCGGTGCTCGCGGGCGCGGTGCGGGCTACGGGGTGCGTGTGCTCCGC
GGGGCCGCGGTGGTTGCTCCCGTGGGCGAGAACCGGTCCTGGTTAAGAACGTGGACTCGAAGGGG
GTTGCTGTGATGCCCGTCAACGGCTAGATACACACCGACGTTATTTTTTCGTCACCTGGCGCCAC
GGTGGATGGCCCGACACGAGCGCGAGAAGGTGAACAAGAGGCTGGCGGCTTAGTGGGGCAATGGC
GTGGTGGGTGGGGGCGTGGAGGCGTAGTGGAGGCGTAGTGGAGAG
Right flanking sequence: Indices 98173 -- 98672
TGCTACGGCTAGGTGGCTACGGTAACGTGATCTGGGCTAGACGAGATCGTCGTTCCAAATAGGAA
GAGAATGTGGCTACAGCTTGTGGCTACAGGTGGATGCGATTGTAGTAGTGGTAGTGGAAATGTGG
TAGTGGTTGTGGTTTGTGGTAGTGGTAGTGGTAGTGGGGACAATGACCTGGTGAAACTGTCGTGA
AACTAGTTTAAATCGTGTTTGTTTCGGTGGTTGTTTCGGTGTGGTTTCGGTGTAAAAAAGGCTGT
TTCTATGGAGCCATTGTGCCAACTTTGTAGCCTATGTAGCCTATGTAGCTTAAATACATACATGG
ATCCCTCAGGCCCATTGTTGGCCGTATTGTGGAGACAATGGCAGTGGGCAACAATAGGCGGTGGA
TCCGCTGGCGGGGGTTTGTGAAGACCGGTGCCTGCCTGCCAAACCTTATTTGTAGGGATTGCTTG
GTCTAGTTTCAGGAGACGATGAAACGCCGCGAAGTTACACAAAAC
Found at i:98293 original size:6 final size:6
Alignment explanation
Indices: 98282--98339 Score: 62
Period size: 6 Copynumber: 9.2 Consensus size: 6
98272 TGCGATTGTA
* * *
98282 GTAGTG GTAGTG GAAATGTG GTAGTG GTTGTG GTTTGTG GTAGTG GTAGTG
1 GTAGTG GTAGTG G-TA-GTG GTAGTG GTAGTG G-TAGTG GTAGTG GTAGTG
98333 GTAGTG G
1 GTAGTG G
98340 GGACAATGAC
Statistics
Matches: 45, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
6 33 0.73
7 8 0.18
8 4 0.09
ACGTcount: A:0.16, C:0.00, G:0.48, T:0.36
Consensus pattern (6 bp):
GTAGTG
Left flanking sequence: Indices 97782 -- 98281
CGAAAACAGACGAGAGGTAAACACGAGGTGCCGGGAGGTGCACCCCAGAGGTTGCGGTGCTCGCG
GGCGCGGTGCGGGCTACGGGGTGCGTGTGCTCCGCGGGGCCGCGGTGGTTGCTCCCGTGGGCGAG
AACCGGTCCTGGTTAAGAACGTGGACTCGAAGGGGGTTGCTGTGATGCCCGTCAACGGCTAGATA
CACACCGACGTTATTTTTTCGTCACCTGGCGCCACGGTGGATGGCCCGACACGAGCGCGAGAAGG
TGAACAAGAGGCTGGCGGCTTAGTGGGGCAATGGCGTGGTGGGTGGGGGCGTGGAGGCGTAGTGG
AGGCGTAGTGGAGAGGTGCTGGGGGGTGTAGTGCTGGAGGTGTAGTGCTGGGAGGTGTAGTGCTG
GTGCTACGGCTAGGTGGCTACGGTAACGTGATCTGGGCTAGACGAGATCGTCGTTCCAAATAGGA
AGAGAATGTGGCTACAGCTTGTGGCTACAGGTGGATGCGATTGTA
Right flanking sequence: Indices 98340 -- 98839
GGACAATGACCTGGTGAAACTGTCGTGAAACTAGTTTAAATCGTGTTTGTTTCGGTGGTTGTTTC
GGTGTGGTTTCGGTGTAAAAAAGGCTGTTTCTATGGAGCCATTGTGCCAACTTTGTAGCCTATGT
AGCCTATGTAGCTTAAATACATACATGGATCCCTCAGGCCCATTGTTGGCCGTATTGTGGAGACA
ATGGCAGTGGGCAACAATAGGCGGTGGATCCGCTGGCGGGGGTTTGTGAAGACCGGTGCCTGCCT
GCCAAACCTTATTTGTAGGGATTGCTTGGTCTAGTTTCAGGAGACGATGAAACGCCGCGAAGTTA
CACAAAACGGGACACAAGGTAAACAGGGCGGGCGAGGCGAGTGATTGGGAACACAGGTGGTCGTG
TGCTCCAGGCTTAGCCGTGGCTTGGCTCTGGCTTGAGATCTGCCTTAAGAAGTACTTCTTTTGAG
TGTCCCGCGTTCGAATCCCGGGCTGGGCTCGGGAAACTCGTACTG
Found at i:98322 original size:19 final size:19
Alignment explanation
Indices: 98277--98334 Score: 71
Period size: 19 Copynumber: 3.0 Consensus size: 19
98267 GTGGATGCGA
* *
98277 TTGTAGTAGTGGTAGTGGAA
1 TTGTGGTAGTGGTAGTGG-T
* *
98297 ATGTGGTAGTGGTTGTGGT
1 TTGTGGTAGTGGTAGTGGT
98316 TTGTGGTAGTGGTAGTGGT
1 TTGTGGTAGTGGTAGTGGT
98335 AGTGGGGACA
Statistics
Matches: 32, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
19 17 0.53
20 15 0.47
ACGTcount: A:0.16, C:0.00, G:0.45, T:0.40
Consensus pattern (19 bp):
TTGTGGTAGTGGTAGTGGT
Left flanking sequence: Indices 97777 -- 98276
TCGGCCGAAAACAGACGAGAGGTAAACACGAGGTGCCGGGAGGTGCACCCCAGAGGTTGCGGTGC
TCGCGGGCGCGGTGCGGGCTACGGGGTGCGTGTGCTCCGCGGGGCCGCGGTGGTTGCTCCCGTGG
GCGAGAACCGGTCCTGGTTAAGAACGTGGACTCGAAGGGGGTTGCTGTGATGCCCGTCAACGGCT
AGATACACACCGACGTTATTTTTTCGTCACCTGGCGCCACGGTGGATGGCCCGACACGAGCGCGA
GAAGGTGAACAAGAGGCTGGCGGCTTAGTGGGGCAATGGCGTGGTGGGTGGGGGCGTGGAGGCGT
AGTGGAGGCGTAGTGGAGAGGTGCTGGGGGGTGTAGTGCTGGAGGTGTAGTGCTGGGAGGTGTAG
TGCTGGTGCTACGGCTAGGTGGCTACGGTAACGTGATCTGGGCTAGACGAGATCGTCGTTCCAAA
TAGGAAGAGAATGTGGCTACAGCTTGTGGCTACAGGTGGATGCGA
Right flanking sequence: Indices 98335 -- 98834
AGTGGGGACAATGACCTGGTGAAACTGTCGTGAAACTAGTTTAAATCGTGTTTGTTTCGGTGGTT
GTTTCGGTGTGGTTTCGGTGTAAAAAAGGCTGTTTCTATGGAGCCATTGTGCCAACTTTGTAGCC
TATGTAGCCTATGTAGCTTAAATACATACATGGATCCCTCAGGCCCATTGTTGGCCGTATTGTGG
AGACAATGGCAGTGGGCAACAATAGGCGGTGGATCCGCTGGCGGGGGTTTGTGAAGACCGGTGCC
TGCCTGCCAAACCTTATTTGTAGGGATTGCTTGGTCTAGTTTCAGGAGACGATGAAACGCCGCGA
AGTTACACAAAACGGGACACAAGGTAAACAGGGCGGGCGAGGCGAGTGATTGGGAACACAGGTGG
TCGTGTGCTCCAGGCTTAGCCGTGGCTTGGCTCTGGCTTGAGATCTGCCTTAAGAAGTACTTCTT
TTGAGTGTCCCGCGTTCGAATCCCGGGCTGGGCTCGGGAAACTCG
Found at i:98413 original size:14 final size:12
Alignment explanation
Indices: 98386--98419 Score: 52
Period size: 11 Copynumber: 2.9 Consensus size: 12
98376 TAAATCGTGT
98386 TTGTTTCGGTGG
1 TTGTTTCGGTGG
98398 TTGTTTCGGT-G
1 TTGTTTCGGTGG
*
98409 TGGTTTCGGTG
1 TTGTTTCGGTG
98420 TAAAAAAGGC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
11 10 0.50
12 10 0.50
ACGTcount: A:0.00, C:0.09, G:0.41, T:0.50
Consensus pattern (12 bp):
TTGTTTCGGTGG
Left flanking sequence: Indices 97886 -- 98385
CCGCGGTGGTTGCTCCCGTGGGCGAGAACCGGTCCTGGTTAAGAACGTGGACTCGAAGGGGGTTG
CTGTGATGCCCGTCAACGGCTAGATACACACCGACGTTATTTTTTCGTCACCTGGCGCCACGGTG
GATGGCCCGACACGAGCGCGAGAAGGTGAACAAGAGGCTGGCGGCTTAGTGGGGCAATGGCGTGG
TGGGTGGGGGCGTGGAGGCGTAGTGGAGGCGTAGTGGAGAGGTGCTGGGGGGTGTAGTGCTGGAG
GTGTAGTGCTGGGAGGTGTAGTGCTGGTGCTACGGCTAGGTGGCTACGGTAACGTGATCTGGGCT
AGACGAGATCGTCGTTCCAAATAGGAAGAGAATGTGGCTACAGCTTGTGGCTACAGGTGGATGCG
ATTGTAGTAGTGGTAGTGGAAATGTGGTAGTGGTTGTGGTTTGTGGTAGTGGTAGTGGTAGTGGG
GACAATGACCTGGTGAAACTGTCGTGAAACTAGTTTAAATCGTGT
Right flanking sequence: Indices 98420 -- 98919
TAAAAAAGGCTGTTTCTATGGAGCCATTGTGCCAACTTTGTAGCCTATGTAGCCTATGTAGCTTA
AATACATACATGGATCCCTCAGGCCCATTGTTGGCCGTATTGTGGAGACAATGGCAGTGGGCAAC
AATAGGCGGTGGATCCGCTGGCGGGGGTTTGTGAAGACCGGTGCCTGCCTGCCAAACCTTATTTG
TAGGGATTGCTTGGTCTAGTTTCAGGAGACGATGAAACGCCGCGAAGTTACACAAAACGGGACAC
AAGGTAAACAGGGCGGGCGAGGCGAGTGATTGGGAACACAGGTGGTCGTGTGCTCCAGGCTTAGC
CGTGGCTTGGCTCTGGCTTGAGATCTGCCTTAAGAAGTACTTCTTTTGAGTGTCCCGCGTTCGAA
TCCCGGGCTGGGCTCGGGAAACTCGTACTGAGCCCGATCAGGTCGTAAAGTGAAATTTCGTAGAG
AAATTGGTGGGGTCGTGAAATTTCACCGTGGTGGGGTCGTAGAGG
Found at i:98929 original size:22 final size:22
Alignment explanation
Indices: 98901--98943 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
98891 GAAATTTCAC
98901 CGTGGTGGGGTCGTAGAGGGGA
1 CGTGGTGGGGTCGTAGAGGGGA
*
98923 CGTGGTGGGGTCGTGGAGGGG
1 CGTGGTGGGGTCGTAGAGGGG
98944 TAGCAGGGGG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.09, C:0.09, G:0.63, T:0.19
Consensus pattern (22 bp):
CGTGGTGGGGTCGTAGAGGGGA
Left flanking sequence: Indices 98401 -- 98900
TTTCGGTGTGGTTTCGGTGTAAAAAAGGCTGTTTCTATGGAGCCATTGTGCCAACTTTGTAGCCT
ATGTAGCCTATGTAGCTTAAATACATACATGGATCCCTCAGGCCCATTGTTGGCCGTATTGTGGA
GACAATGGCAGTGGGCAACAATAGGCGGTGGATCCGCTGGCGGGGGTTTGTGAAGACCGGTGCCT
GCCTGCCAAACCTTATTTGTAGGGATTGCTTGGTCTAGTTTCAGGAGACGATGAAACGCCGCGAA
GTTACACAAAACGGGACACAAGGTAAACAGGGCGGGCGAGGCGAGTGATTGGGAACACAGGTGGT
CGTGTGCTCCAGGCTTAGCCGTGGCTTGGCTCTGGCTTGAGATCTGCCTTAAGAAGTACTTCTTT
TGAGTGTCCCGCGTTCGAATCCCGGGCTGGGCTCGGGAAACTCGTACTGAGCCCGATCAGGTCGT
AAAGTGAAATTTCGTAGAGAAATTGGTGGGGTCGTGAAATTTCAC
Right flanking sequence: Indices 98944 -- 99443
TAGCAGGGGGTAGGGGTGGCGAGGCTGTTTCTTTTGGCTGCTCGCGAGCTCTGGCTCGGGCTGTA
CTCGGGCTCTGGGTGGCATAGCCCCAACCACAAAACCGGACCACTGAAACCCCTTCTCTGGGCTA
CCACAATTGGGGTAAGTCACAGACAAAATTACAGACACCTTAGGGTATAGCGGAGGGTCTAGTTG
TTGCTATGTTGCTTATTATCACCAACCAGTTGCTTTGGGGGATGGTGCTCCTCGCGGTGTGTCTA
GTGACCGTGGTCAAGGCGCGGGGGAACCGCGAAGACGAGCTCAGGGGGTATTAGTGTGGAATAAA
GAAGTGTTTAGGAATAAAGGAATAAAGGATGGATTTACGAAGTGTAGGGCGGGGAAAGAGAAGGT
GGGGAGCCCCATTCAGGGCGGACTTGGAGACAAGGTTTTAGGGGCGATTGAGGGTATACTGAGAG
TCCCACCAGAACCGTCTCACTAAAACCATCCACCGTTGACGTCAC
Found at i:98932 original size:11 final size:11
Alignment explanation
Indices: 98901--98944 Score: 52
Period size: 11 Copynumber: 4.0 Consensus size: 11
98891 GAAATTTCAC
*
98901 CGTGGTGGGGT
1 CGTGGAGGGGT
* *
98912 CGTAGAGGGGA
1 CGTGGAGGGGT
*
98923 CGTGGTGGGGT
1 CGTGGAGGGGT
98934 CGTGGAGGGGT
1 CGTGGAGGGGT
98945 AGCAGGGGGT
Statistics
Matches: 26, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
11 26 1.00
ACGTcount: A:0.09, C:0.09, G:0.61, T:0.20
Consensus pattern (11 bp):
CGTGGAGGGGT
Left flanking sequence: Indices 98401 -- 98900
TTTCGGTGTGGTTTCGGTGTAAAAAAGGCTGTTTCTATGGAGCCATTGTGCCAACTTTGTAGCCT
ATGTAGCCTATGTAGCTTAAATACATACATGGATCCCTCAGGCCCATTGTTGGCCGTATTGTGGA
GACAATGGCAGTGGGCAACAATAGGCGGTGGATCCGCTGGCGGGGGTTTGTGAAGACCGGTGCCT
GCCTGCCAAACCTTATTTGTAGGGATTGCTTGGTCTAGTTTCAGGAGACGATGAAACGCCGCGAA
GTTACACAAAACGGGACACAAGGTAAACAGGGCGGGCGAGGCGAGTGATTGGGAACACAGGTGGT
CGTGTGCTCCAGGCTTAGCCGTGGCTTGGCTCTGGCTTGAGATCTGCCTTAAGAAGTACTTCTTT
TGAGTGTCCCGCGTTCGAATCCCGGGCTGGGCTCGGGAAACTCGTACTGAGCCCGATCAGGTCGT
AAAGTGAAATTTCGTAGAGAAATTGGTGGGGTCGTGAAATTTCAC
Right flanking sequence: Indices 98945 -- 99444
AGCAGGGGGTAGGGGTGGCGAGGCTGTTTCTTTTGGCTGCTCGCGAGCTCTGGCTCGGGCTGTAC
TCGGGCTCTGGGTGGCATAGCCCCAACCACAAAACCGGACCACTGAAACCCCTTCTCTGGGCTAC
CACAATTGGGGTAAGTCACAGACAAAATTACAGACACCTTAGGGTATAGCGGAGGGTCTAGTTGT
TGCTATGTTGCTTATTATCACCAACCAGTTGCTTTGGGGGATGGTGCTCCTCGCGGTGTGTCTAG
TGACCGTGGTCAAGGCGCGGGGGAACCGCGAAGACGAGCTCAGGGGGTATTAGTGTGGAATAAAG
AAGTGTTTAGGAATAAAGGAATAAAGGATGGATTTACGAAGTGTAGGGCGGGGAAAGAGAAGGTG
GGGAGCCCCATTCAGGGCGGACTTGGAGACAAGGTTTTAGGGGCGATTGAGGGTATACTGAGAGT
CCCACCAGAACCGTCTCACTAAAACCATCCACCGTTGACGTCACG
Found at i:99907 original size:12 final size:12
Alignment explanation
Indices: 99884--99962 Score: 81
Period size: 12 Copynumber: 6.5 Consensus size: 12
99874 TATCTTCCCA
*
99884 ATCACCAGATAG
1 ATCACCAAATAG
*
99896 ATTACCAAATAG
1 ATCACCAAATAG
99908 ATCACCAAATAG
1 ATCACCAAATAG
* *
99920 ATCAGCAAAAAG
1 ATCACCAAATAG
99932 AATCACC-AATAG
1 -ATCACCAAATAG
99944 AATCACC-AATAG
1 -ATCACCAAATAG
99956 AATCACC
1 -ATCACC
99963 TTGAAATAGT
Statistics
Matches: 59, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
12 54 0.92
13 5 0.08
ACGTcount: A:0.49, C:0.24, G:0.10, T:0.16
Consensus pattern (12 bp):
ATCACCAAATAG
Left flanking sequence: Indices 99384 -- 99883
AGGGTATACTGAGAGTCCCACCAGAACCGTCTCACTAAAACCATCCACCGTTGACGTCACGACGT
TGGTGATGGTTACCAGAGAGATTGGAATGTTTGTGGGTTGCTGCAGATGGAGAGCGTTACCGTGG
TCCCAGTAGGTTGCCGGAGTTATCGTGGGTGATACTCGCTTGGAAGACACATCAAGGGGCTCCTG
AAATTTGAGTATGTTAAATCAGTCACACCCGGGAGAACGGGGTACGAAGCAGGGATCGTAATTTG
GGCAGCATTTATGGATGGCCCAGTGGGTCGGCTAACGAATTGGAAATGTGGGTTAGTCAATGGGT
TGCTCAGTGGATTGGGTTGACCTAGTGGGTTGGTTGGTTCGAAGGGATGGTTGGTTTGATGATGA
GCTGGTGGGTTGATTTAGAGGTTAGTCGAATGAGCTGTGGTCATTGATTGGTCCATCTACGTCAT
ACATTGGGCTCGTCGCCAGTGTCTGTCACCAGCGCTATCTTCCCA
Right flanking sequence: Indices 99963 -- 100462
TTGAAATAGTAGTGTTCAGCCCACTGCCTGAAAGAATCCGCTAGTCATTGGCCACTATGGTGCAT
TTTCCCATACTAGCACTCGCTAATGGCCTAGGACAACTTCTCAGCCGTGTCATCCCAGGTGAACG
TCCCACAGGTTCGCAGACCAGACTCACAAAGTGCCCAGAACACGTAATCCAAGACACGCAATACC
AAAACACCCGCCTTTGTATGTCCATATAGAAAACTACGCCTTATTTATCATATTAACCTAACGGA
TCAATTGCTACTGGCTAAACCCATAGTTTAGATATTCATACCCGTCGTACTAGCAAAACCCAAGG
TAGCGACTGTTAGAGCGTGCGACTGTTAGAGCGTGGGTTTATTGATTAAGCAAATAGCCTACATT
TGAGATTGTCCATTGATTAGGTGAATAGATAAGCATACTGCTATGACTGACCTCCACCGAAGACT
AGCAAACTAACCCACCAACCCACCGGTTAGTACTTTTTCAAAACC
Found at i:99919 original size:24 final size:25
Alignment explanation
Indices: 99883--99962 Score: 94
Period size: 24 Copynumber: 3.3 Consensus size: 25
99873 CTATCTTCCC
* *
99883 AATCACCAGATAGATTACCAAATAG
1 AATCACCAAATAGATCACCAAATAG
* *
99908 -ATCACCAAATAGATCAGCAAAAAG
1 AATCACCAAATAGATCACCAAATAG
99932 AATCACC-AATAGAATCACC-AATAG
1 AATCACCAAATAG-ATCACCAAATAG
99956 AATCACC
1 AATCACC
99963 TTGAAATAGT
Statistics
Matches: 47, Mismatches: 6, Indels: 5
0.81 0.10 0.09
Matches are distributed among these distances:
24 36 0.77
25 11 0.23
ACGTcount: A:0.50, C:0.24, G:0.10, T:0.16
Consensus pattern (25 bp):
AATCACCAAATAGATCACCAAATAG
Left flanking sequence: Indices 99383 -- 99882
GAGGGTATACTGAGAGTCCCACCAGAACCGTCTCACTAAAACCATCCACCGTTGACGTCACGACG
TTGGTGATGGTTACCAGAGAGATTGGAATGTTTGTGGGTTGCTGCAGATGGAGAGCGTTACCGTG
GTCCCAGTAGGTTGCCGGAGTTATCGTGGGTGATACTCGCTTGGAAGACACATCAAGGGGCTCCT
GAAATTTGAGTATGTTAAATCAGTCACACCCGGGAGAACGGGGTACGAAGCAGGGATCGTAATTT
GGGCAGCATTTATGGATGGCCCAGTGGGTCGGCTAACGAATTGGAAATGTGGGTTAGTCAATGGG
TTGCTCAGTGGATTGGGTTGACCTAGTGGGTTGGTTGGTTCGAAGGGATGGTTGGTTTGATGATG
AGCTGGTGGGTTGATTTAGAGGTTAGTCGAATGAGCTGTGGTCATTGATTGGTCCATCTACGTCA
TACATTGGGCTCGTCGCCAGTGTCTGTCACCAGCGCTATCTTCCC
Right flanking sequence: Indices 99963 -- 100462
TTGAAATAGTAGTGTTCAGCCCACTGCCTGAAAGAATCCGCTAGTCATTGGCCACTATGGTGCAT
TTTCCCATACTAGCACTCGCTAATGGCCTAGGACAACTTCTCAGCCGTGTCATCCCAGGTGAACG
TCCCACAGGTTCGCAGACCAGACTCACAAAGTGCCCAGAACACGTAATCCAAGACACGCAATACC
AAAACACCCGCCTTTGTATGTCCATATAGAAAACTACGCCTTATTTATCATATTAACCTAACGGA
TCAATTGCTACTGGCTAAACCCATAGTTTAGATATTCATACCCGTCGTACTAGCAAAACCCAAGG
TAGCGACTGTTAGAGCGTGCGACTGTTAGAGCGTGGGTTTATTGATTAAGCAAATAGCCTACATT
TGAGATTGTCCATTGATTAGGTGAATAGATAAGCATACTGCTATGACTGACCTCCACCGAAGACT
AGCAAACTAACCCACCAACCCACCGGTTAGTACTTTTTCAAAACC
Found at i:100311 original size:16 final size:16
Alignment explanation
Indices: 100290--100322 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
100280 ACCCAAGGTA
100290 GCGACTGTTAGAGCGT
1 GCGACTGTTAGAGCGT
100306 GCGACTGTTAGAGCGT
1 GCGACTGTTAGAGCGT
100322 G
1 G
100323 GGTTTATTGA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.18, C:0.18, G:0.39, T:0.24
Consensus pattern (16 bp):
GCGACTGTTAGAGCGT
Left flanking sequence: Indices 99790 -- 100289
AGAGGTTAGTCGAATGAGCTGTGGTCATTGATTGGTCCATCTACGTCATACATTGGGCTCGTCGC
CAGTGTCTGTCACCAGCGCTATCTTCCCAATCACCAGATAGATTACCAAATAGATCACCAAATAG
ATCAGCAAAAAGAATCACCAATAGAATCACCAATAGAATCACCTTGAAATAGTAGTGTTCAGCCC
ACTGCCTGAAAGAATCCGCTAGTCATTGGCCACTATGGTGCATTTTCCCATACTAGCACTCGCTA
ATGGCCTAGGACAACTTCTCAGCCGTGTCATCCCAGGTGAACGTCCCACAGGTTCGCAGACCAGA
CTCACAAAGTGCCCAGAACACGTAATCCAAGACACGCAATACCAAAACACCCGCCTTTGTATGTC
CATATAGAAAACTACGCCTTATTTATCATATTAACCTAACGGATCAATTGCTACTGGCTAAACCC
ATAGTTTAGATATTCATACCCGTCGTACTAGCAAAACCCAAGGTA
Right flanking sequence: Indices 100323 -- 100822
GGTTTATTGATTAAGCAAATAGCCTACATTTGAGATTGTCCATTGATTAGGTGAATAGATAAGCA
TACTGCTATGACTGACCTCCACCGAAGACTAGCAAACTAACCCACCAACCCACCGGTTAGTACTT
TTTCAAAACCACCCTAAATCATCCACTTGTGGGACTACCACCTACTCTATCGACGCTGCGTTCGT
TTGCAGCCACTCGTATCGCTGCCCTCGGTAATTCGCGGCGATTATGCAGGGTTCATGCAGGGTCT
TGTCTCTTGCTGTTTCAACCCACCCCAGATGACAACCCTTGGTGCTGAGCAGTGGCAGCTCGTCG
CCCTGTTGCTCGACTACGACCTGCTTGATGTCTTTGTCAACGAAATCCGCCACGACCCCAATTTC
CGCGACGTCTACCACGCCCTCACCCGGGGCCCGATAACCCTCGAGTTTGGCCACCACCCGGTGCC
CGAAATGCGAAAAGCCAAGTACCGCGACATCTCGGTGGTGCTCCT
Found at i:102566 original size:21 final size:22
Alignment explanation
Indices: 102542--102587 Score: 67
Period size: 22 Copynumber: 2.1 Consensus size: 22
102532 GAGATGATGA
102542 GAAGTGACGAG-AAGTGACAAG
1 GAAGTGACGAGAAAGTGACAAG
* *
102563 GAAGTGGCGAGAAAGTGACGAG
1 GAAGTGACGAGAAAGTGACAAG
102585 GAA
1 GAA
102588 ATCTTCTATA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 10 0.45
22 12 0.55
ACGTcount: A:0.41, C:0.09, G:0.41, T:0.09
Consensus pattern (22 bp):
GAAGTGACGAGAAAGTGACAAG
Left flanking sequence: Indices 102042 -- 102541
TACACCGACCACCCCGACGGGAAGATCCACTTGCTCATCAACCAGAGCCCCACCAACCCAGAAGC
CAGCTACGTGTACGACCAGCGCACCACCCGGGTCGAGCTCCACGTCACCCGGGCCCAGGTGGACC
ACAACCCGTCGCTTTTGGAGCTCCCGACCCCGCTCACCCGGGCCCGGCTCTTTTGCGAGTCGGAC
TGTTTCGGGTTGCTTGACGACTCGTACTCGATTCGGGTGCTTGAGTTCCACAGCCACGACGGGCC
CACCGAGGACAACCCTGTGGTGGTGCCGTCGCTGGTGGAGTCGTTGGAGATTGCGGTGACGTCGT
TGGCCAACGACACTGCGTATATCAAGGTGCTTGGGGAGACGACCAAGCTCCGCGAGCTATTCATC
ACCGGGCCCAAGAAGTGTCGGTACCAGTTTGTGGGGACTAATCAGCCCCGGTTCCGCTACTTTAA
CGGGGAGAGAGTGGACGAGTAAGTGGAGGGTGGTTGAGATGATGA
Right flanking sequence: Indices 102588 -- 103087
ATCTTCTATAGATTTCAGTAACACCATACGAATGGAAGATCACTAGATCTAGTCTTTTTGTGTTC
CACGCCCTTGTTTATTCGATGTTGAGTCTAAAGAGACCAAAAAATGGCTGATTGAGGCTTTGAAG
ACCTCGTGTTGCTCGGGTTCATTTCATGGTGGCACGAGTTTTTCTGTCCATCCCAAATGGTTCAT
AGTCTATAAAAATTGATGAGAACACTCCCTGTATGACCACATACCTGCCTTCTGATGTAGATACG
CCTTATTATTCGTCTTACTTTAACACGATGATCCAACTCCGGTCTATCCAAGTTATCACTCTCAT
ATTACCCCAGTCGTTAGCCACACAATGCCGTACAATACTGTGGGTCAAGCGATCTAACAAGCTAT
ATTTGGACTCTAAGGCATTGTAAGGCAGACGATAACCACTCTCAACGGCTGATAGGCACTTTCAA
CCATGGCTGGTACGCCAATACCTGGAGAGCCTCCTCCATGAATTT
Found at i:102568 original size:11 final size:11
Alignment explanation
Indices: 102542--102587 Score: 58
Period size: 11 Copynumber: 4.3 Consensus size: 11
102532 GAGATGATGA
102542 GAAGTGACGA-
1 GAAGTGACGAG
*
102552 GAAGTGACAAG
1 GAAGTGACGAG
*
102563 GAAGTGGCGAG
1 GAAGTGACGAG
*
102574 AAAGTGACGAG
1 GAAGTGACGAG
102585 GAA
1 GAA
102588 ATCTTCTATA
Statistics
Matches: 29, Mismatches: 6, Indels: 1
0.81 0.17 0.03
Matches are distributed among these distances:
10 9 0.31
11 20 0.69
ACGTcount: A:0.41, C:0.09, G:0.41, T:0.09
Consensus pattern (11 bp):
GAAGTGACGAG
Left flanking sequence: Indices 102042 -- 102541
TACACCGACCACCCCGACGGGAAGATCCACTTGCTCATCAACCAGAGCCCCACCAACCCAGAAGC
CAGCTACGTGTACGACCAGCGCACCACCCGGGTCGAGCTCCACGTCACCCGGGCCCAGGTGGACC
ACAACCCGTCGCTTTTGGAGCTCCCGACCCCGCTCACCCGGGCCCGGCTCTTTTGCGAGTCGGAC
TGTTTCGGGTTGCTTGACGACTCGTACTCGATTCGGGTGCTTGAGTTCCACAGCCACGACGGGCC
CACCGAGGACAACCCTGTGGTGGTGCCGTCGCTGGTGGAGTCGTTGGAGATTGCGGTGACGTCGT
TGGCCAACGACACTGCGTATATCAAGGTGCTTGGGGAGACGACCAAGCTCCGCGAGCTATTCATC
ACCGGGCCCAAGAAGTGTCGGTACCAGTTTGTGGGGACTAATCAGCCCCGGTTCCGCTACTTTAA
CGGGGAGAGAGTGGACGAGTAAGTGGAGGGTGGTTGAGATGATGA
Right flanking sequence: Indices 102588 -- 103087
ATCTTCTATAGATTTCAGTAACACCATACGAATGGAAGATCACTAGATCTAGTCTTTTTGTGTTC
CACGCCCTTGTTTATTCGATGTTGAGTCTAAAGAGACCAAAAAATGGCTGATTGAGGCTTTGAAG
ACCTCGTGTTGCTCGGGTTCATTTCATGGTGGCACGAGTTTTTCTGTCCATCCCAAATGGTTCAT
AGTCTATAAAAATTGATGAGAACACTCCCTGTATGACCACATACCTGCCTTCTGATGTAGATACG
CCTTATTATTCGTCTTACTTTAACACGATGATCCAACTCCGGTCTATCCAAGTTATCACTCTCAT
ATTACCCCAGTCGTTAGCCACACAATGCCGTACAATACTGTGGGTCAAGCGATCTAACAAGCTAT
ATTTGGACTCTAAGGCATTGTAAGGCAGACGATAACCACTCTCAACGGCTGATAGGCACTTTCAA
CCATGGCTGGTACGCCAATACCTGGAGAGCCTCCTCCATGAATTT
Found at i:104869 original size:11 final size:11
Alignment explanation
Indices: 104853--104882 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
104843 GTGTGTGGTT
104853 TGTGGTGGGTG
1 TGTGGTGGGTG
*
104864 TGTGGTTGGTG
1 TGTGGTGGGTG
104875 TGTGGTGG
1 TGTGGTGG
104883 TGCAGTGGAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.00, C:0.00, G:0.60, T:0.40
Consensus pattern (11 bp):
TGTGGTGGGTG
Left flanking sequence: Indices 104353 -- 104852
TGGCAAAGTAGTTGATCACCTCGGGGGCCAACTCGGTGTTCTTGACCGCAGCCAACACGTCGGTG
ACGATCTGGTACTCTCTCTTCTCGATCTCAGACGCCATGACGTCACGGCGCGCTCTCATGGTTTC
GAGCTCGGCCATCGCCTGGTGGAGGCCCTTGGACTCCTCGCGGAGAACCAAGTGCGACTCCGACT
CGACCACGGGGACGTAGGCGTGGGTGGCGGCAGCCACGGCCATGGTGGCAACAGCAGTGGAGTAC
TTCATAGCGAGCGACAAAGTAGGGTGGTTACTACGTGGCGCGGGGCTGGATTTATATAGAGATTT
GTGGTGTGGGCAACTTTTTACCCAGTTGGGCAGCTGGGCCGCCTATTGCCCGATGGGGAAGTAGC
GTGCGGGCTCGTGACGGTATGCGAGGGACGCCCTCGGAATGCCGGAAGTGGGAGGAAGGCTGGAG
AGTGGTGGTGATGGAGGATGGTGGTTGGCTGTGTGGTGTGTGGTT
Right flanking sequence: Indices 104883 -- 105382
TGCAGTGGATGTTGATGGTTTTTGGGCTGTTGTTTTGTGCGTGGTGTTTTTTCTCGGGAGAAGCG
TGTCTCACTTGGTGTTGCTATTCTTAGTATGGGTATCGGAGAAGGTCCACCTAATGTAAAGTTGT
GGGAGGAAACAAGGAATTAGTTGTGTGAATTGTATGAATTTTATGAACTCGGTGGAACCACTGCT
TGATACCCTATTCACCCTTCAACCCGCCACCGCCGTGTTCAACCTCCTAGCCCCTCCCTCTTGTT
GCCCCCGGAACTCACTTCCGGTTGTTTTCATCGTATACCTCGAATAATCCGCGAAAATATCTGAC
ACTATTCCAAATTAGGCAAGTAACGGTTGACGAGGCTAGACCCACCACAAAGCGACGCCAGCCGC
AAGGCTGACTTACGAGACGAGCGAGATGGTAACTGAGTCAACGACCGAGCGGCACACGGCTGGCA
CTGAGCATTATCCCTCTCTGTTTGTGTGTATATCCCACCCGTTTG
Found at i:104890 original size:22 final size:22
Alignment explanation
Indices: 104848--104890 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
104838 GTGTGGTGTG
* *
104848 TGGTTTGTGGTGGGTGTGTGGT
1 TGGTGTGTGGTGGGTGAGTGGT
104870 TGGTGTGTGGT-GGTGCAGTGG
1 TGGTGTGTGGTGGGTG-AGTGG
104891 ATGTTGATGG
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
21 4 0.22
22 14 0.78
ACGTcount: A:0.02, C:0.02, G:0.56, T:0.40
Consensus pattern (22 bp):
TGGTGTGTGGTGGGTGAGTGGT
Left flanking sequence: Indices 104348 -- 104847
GTTGGTGGCAAAGTAGTTGATCACCTCGGGGGCCAACTCGGTGTTCTTGACCGCAGCCAACACGT
CGGTGACGATCTGGTACTCTCTCTTCTCGATCTCAGACGCCATGACGTCACGGCGCGCTCTCATG
GTTTCGAGCTCGGCCATCGCCTGGTGGAGGCCCTTGGACTCCTCGCGGAGAACCAAGTGCGACTC
CGACTCGACCACGGGGACGTAGGCGTGGGTGGCGGCAGCCACGGCCATGGTGGCAACAGCAGTGG
AGTACTTCATAGCGAGCGACAAAGTAGGGTGGTTACTACGTGGCGCGGGGCTGGATTTATATAGA
GATTTGTGGTGTGGGCAACTTTTTACCCAGTTGGGCAGCTGGGCCGCCTATTGCCCGATGGGGAA
GTAGCGTGCGGGCTCGTGACGGTATGCGAGGGACGCCCTCGGAATGCCGGAAGTGGGAGGAAGGC
TGGAGAGTGGTGGTGATGGAGGATGGTGGTTGGCTGTGTGGTGTG
Right flanking sequence: Indices 104891 -- 105390
ATGTTGATGGTTTTTGGGCTGTTGTTTTGTGCGTGGTGTTTTTTCTCGGGAGAAGCGTGTCTCAC
TTGGTGTTGCTATTCTTAGTATGGGTATCGGAGAAGGTCCACCTAATGTAAAGTTGTGGGAGGAA
ACAAGGAATTAGTTGTGTGAATTGTATGAATTTTATGAACTCGGTGGAACCACTGCTTGATACCC
TATTCACCCTTCAACCCGCCACCGCCGTGTTCAACCTCCTAGCCCCTCCCTCTTGTTGCCCCCGG
AACTCACTTCCGGTTGTTTTCATCGTATACCTCGAATAATCCGCGAAAATATCTGACACTATTCC
AAATTAGGCAAGTAACGGTTGACGAGGCTAGACCCACCACAAAGCGACGCCAGCCGCAAGGCTGA
CTTACGAGACGAGCGAGATGGTAACTGAGTCAACGACCGAGCGGCACACGGCTGGCACTGAGCAT
TATCCCTCTCTGTTTGTGTGTATATCCCACCCGTTTGGGCGGGTC
Found at i:106030 original size:23 final size:23
Alignment explanation
Indices: 105976--106018 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
105966 GAATTTCATC
*
105976 TTTAGAACTTCATTTGGAACCCG
1 TTTAGAACTTCATTTAGAACCCG
105999 TTTAGAACTTC-TTTAGAACC
1 TTTAGAACTTCATTTAGAACC
106019 TCTTTTAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 8 0.42
23 11 0.58
ACGTcount: A:0.28, C:0.21, G:0.14, T:0.37
Consensus pattern (23 bp):
TTTAGAACTTCATTTAGAACCCG
Left flanking sequence: Indices 105476 -- 105975
GACCAGTGGCACCACAGACAGCTGACACGCGGGCAGGGCACGGCGCGGCTAGAATCAAAACAGTA
GCATCAGATGACAGCCTACGGGGTAATTGGATTGGGTTACTTTTTGGGGTACTTTCTGGGATGAC
TCTCTGGGTTACTTTCTCTCACTTTGACGATTTTTTCTTGGTGATTTGTTACGGACTTTGCTTCG
CTCCTTAAACTCTAAAAGGAGCAAATTCCAACGCTCCGAAGCTAAGATTTCGGCTCATGGGTTGG
CGTAATGCCATCGACTGCGGCGAACAATAGGCGAATTTAGGTTTGGAATTGCTTGAGGGGTCAGT
CTGGATTGGGCTAATAGCCAGCGTGGGTAGTGTGGGGAGTTGCAATGTGTTGGTGTGAGGACGTA
GGGGGGGCGGGAGAACGGGCGGAGAACGGGTGGTTTCTTTGGTCATTCTCCAGGTATCGTGTTGC
TAGTCTACTAGTCTATTGGAATGTCTGGACTCTGGGAATTTCATC
Right flanking sequence: Indices 106019 -- 106518
TCTTTTAAAACTACTCTCACCAACTTAGTCTCCAATTTCTCGCTAGCGGGTGGGGCTGTCAGTGC
TGACGCCTGGGCGGGTGACGGGAGTCTGCTGAAACGGCTGTTAGTTTTCCTGATTTGACTACTCG
GCTAGCTCGTTGTGGGCCCTTGACATTCCGTCCATGGACGGATTAGGCAATAAACCATGTGAAGG
AAGAAAGAAAGTGGGAAAAGGAAGTGATTTGAACTTTATCCAAAATTGGTTTAGATTGTTGTGAA
GGACATGTGGGAAGTTTCTGATGGGTATTTGTGAAAGGCTATTTGGTAGTGGCTATTTGTTATGG
CTATTTCAGTAGCGACTGAAACAATAGTAGCTATTTGTATCGGTAAGTGCTGAGAAACGATTAAA
GGGTAGAGTTCCAAGAGCCGCTAGAAGTTTCGAGAGTAAATTAGAGTAAATAAGGGAGTGAAGCC
TAAATCTAATAATCTGTGCTTCTCCTATCATTATAATTCATCAAT
Found at i:106346 original size:13 final size:14
Alignment explanation
Indices: 106315--106349 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
106305 ATTTGTGAAA
106315 GGCTATTTGGTAGT
1 GGCTATTTGGTAGT
*
106329 GGCTATTTGTTA-T
1 GGCTATTTGGTAGT
106342 GGCTATTT
1 GGCTATTT
106350 CAGTAGCGAC
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
13 9 0.45
14 11 0.55
ACGTcount: A:0.14, C:0.09, G:0.29, T:0.49
Consensus pattern (14 bp):
GGCTATTTGGTAGT
Left flanking sequence: Indices 105815 -- 106314
TAGCCAGCGTGGGTAGTGTGGGGAGTTGCAATGTGTTGGTGTGAGGACGTAGGGGGGGCGGGAGA
ACGGGCGGAGAACGGGTGGTTTCTTTGGTCATTCTCCAGGTATCGTGTTGCTAGTCTACTAGTCT
ATTGGAATGTCTGGACTCTGGGAATTTCATCTTTAGAACTTCATTTGGAACCCGTTTAGAACTTC
TTTAGAACCTCTTTTAAAACTACTCTCACCAACTTAGTCTCCAATTTCTCGCTAGCGGGTGGGGC
TGTCAGTGCTGACGCCTGGGCGGGTGACGGGAGTCTGCTGAAACGGCTGTTAGTTTTCCTGATTT
GACTACTCGGCTAGCTCGTTGTGGGCCCTTGACATTCCGTCCATGGACGGATTAGGCAATAAACC
ATGTGAAGGAAGAAAGAAAGTGGGAAAAGGAAGTGATTTGAACTTTATCCAAAATTGGTTTAGAT
TGTTGTGAAGGACATGTGGGAAGTTTCTGATGGGTATTTGTGAAA
Right flanking sequence: Indices 106350 -- 106849
CAGTAGCGACTGAAACAATAGTAGCTATTTGTATCGGTAAGTGCTGAGAAACGATTAAAGGGTAG
AGTTCCAAGAGCCGCTAGAAGTTTCGAGAGTAAATTAGAGTAAATAAGGGAGTGAAGCCTAAATC
TAATAATCTGTGCTTCTCCTATCATTATAATTCATCAATCATAATAGGTATTATCCCAATTTTAA
AACTTTTGCTAAATTATCACCAAACTGTACAAAATTCAGACCCAAGACCATCAAAAGCCTTTTCG
AACCCCACAACACACACTCTAACCATTCTCTAACTACACTCAAAACCACTCAAAACCACCCAATC
CAGTAACACCACTACCTCCACCCCTACAAATCTCCCTAAATCCGTCTATTTCTTGCTAAAAAAGC
TGGCCACGTCCATCTGGCGGCCCTTGCCCTTCGCCTTGGTGGCCGGCTTGGGCCGCGGCTTCACC
GGCTCGCTCCGCTTGGGCGCCGGCTTCGTGGGCTTCTTTGTCCGC
Found at i:107061 original size:21 final size:21
Alignment explanation
Indices: 107017--107061 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
107007 CCACCGCTTT
* *
107017 CTCCTCTTTCCCCTCCTTTCC
1 CTCCTCCTTCCCCTCCTGTCC
*
107038 CTCCTCCTTCCCCTCCTGTGC
1 CTCCTCCTTCCCCTCCTGTCC
107059 CTC
1 CTC
107062 TTTGTCGTCC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.00, C:0.58, G:0.04, T:0.38
Consensus pattern (21 bp):
CTCCTCCTTCCCCTCCTGTCC
Left flanking sequence: Indices 106517 -- 107016
ATCATAATAGGTATTATCCCAATTTTAAAACTTTTGCTAAATTATCACCAAACTGTACAAAATTC
AGACCCAAGACCATCAAAAGCCTTTTCGAACCCCACAACACACACTCTAACCATTCTCTAACTAC
ACTCAAAACCACTCAAAACCACCCAATCCAGTAACACCACTACCTCCACCCCTACAAATCTCCCT
AAATCCGTCTATTTCTTGCTAAAAAAGCTGGCCACGTCCATCTGGCGGCCCTTGCCCTTCGCCTT
GGTGGCCGGCTTGGGCCGCGGCTTCACCGGCTCGCTCCGCTTGGGCGCCGGCTTCGTGGGCTTCT
TTGTCCGCACTATGTACCCGTCCTCGTCCACCTCCTGGGTGACCTCTTCCTCGGGCTCCTCGGCC
TCAAATAGCGGCGGCTCGTCGGGCGGGGTGTCCTGCTTGGTCGCTGTGGTCTCTGTGGGCTCAGC
AGCTGGTTCCTTGGGCTGTTCGTTGTCGTCTTTCCCCACCGCTTT
Right flanking sequence: Indices 107062 -- 107561
TTTGTCGTCCTCCAGGAAGAAGTCGTCGTCGTTGTCGAAGATGTTCGCTAACTCCGCCATCTGCT
CCTTCAGCTTCTGTTTGTGCTCGTGGTCCACGGCCTCGTCCCGGGCCTCGTCCTCGTTGTGGGTG
GCAACAATCACCCGCTCCCGGGGCTCCCTCTTCTCCTCCTTGCGCAGTTTGTACACGAGTTTGGG
CCTGCTGGCGGGCTTAGCGGTGGCCAGCGGCGAGTCGGCCTTTCGTTTGCGGGACACGTACATCA
GCGAGAGCGTCAGTGTCTTTTTAGGGGTGTTGGAAGCGTCCTTGGTGGAGTCCTTGGCGTCCTTG
GTGGAGTCCTTGTTGGCTGGTGTGCCCGAGGTGCTGGCGGAGGTGCTCGCACCTCCCTTGGCCAC
GGGCGACGAGCCCAATTCTATCGGTTTCTTGGCCTCGGTCTTGACACGTCCCCGGGTCTCAGCCA
CCGCCAAGCACTTGGCGGGGCCCTTGATGACGAGCTTGGTGGCGT
Found at i:107374 original size:12 final size:12
Alignment explanation
Indices: 107359--107398 Score: 50
Period size: 12 Copynumber: 3.6 Consensus size: 12
107349 TGTTGGAAGC
107359 GTCCTTGGTGGA
1 GTCCTTGGTGGA
*
107371 GTCC-T--TGGC
1 GTCCTTGGTGGA
107380 GTCCTTGGTGGA
1 GTCCTTGGTGGA
107392 GTCCTTG
1 GTCCTTG
107399 TTGGCTGGTG
Statistics
Matches: 23, Mismatches: 2, Indels: 6
0.74 0.06 0.19
Matches are distributed among these distances:
9 7 0.30
10 1 0.04
11 1 0.04
12 14 0.61
ACGTcount: A:0.05, C:0.23, G:0.38, T:0.35
Consensus pattern (12 bp):
GTCCTTGGTGGA
Left flanking sequence: Indices 106859 -- 107358
CCGTCCTCGTCCACCTCCTGGGTGACCTCTTCCTCGGGCTCCTCGGCCTCAAATAGCGGCGGCTC
GTCGGGCGGGGTGTCCTGCTTGGTCGCTGTGGTCTCTGTGGGCTCAGCAGCTGGTTCCTTGGGCT
GTTCGTTGTCGTCTTTCCCCACCGCTTTCTCCTCTTTCCCCTCCTTTCCCTCCTCCTTCCCCTCC
TGTGCCTCTTTGTCGTCCTCCAGGAAGAAGTCGTCGTCGTTGTCGAAGATGTTCGCTAACTCCGC
CATCTGCTCCTTCAGCTTCTGTTTGTGCTCGTGGTCCACGGCCTCGTCCCGGGCCTCGTCCTCGT
TGTGGGTGGCAACAATCACCCGCTCCCGGGGCTCCCTCTTCTCCTCCTTGCGCAGTTTGTACACG
AGTTTGGGCCTGCTGGCGGGCTTAGCGGTGGCCAGCGGCGAGTCGGCCTTTCGTTTGCGGGACAC
GTACATCAGCGAGAGCGTCAGTGTCTTTTTAGGGGTGTTGGAAGC
Right flanking sequence: Indices 107399 -- 107898
TTGGCTGGTGTGCCCGAGGTGCTGGCGGAGGTGCTCGCACCTCCCTTGGCCACGGGCGACGAGCC
CAATTCTATCGGTTTCTTGGCCTCGGTCTTGACACGTCCCCGGGTCTCAGCCACCGCCAAGCACT
TGGCGGGGCCCTTGATGACGAGCTTGGTGGCGTCTCGTGGGAGCTCCTTGAGCTGTTCCGCCTCG
CACCACCCGACCTCCGCGAGGGTGAACGTCCCGGAGGTGCTGTGGAGCGAGTACACCGCGGTCTC
GCACACCTCCTCAAACAGCGCCTTTTCCTCCTCAAGCACCGCCTGAGGCACCACCTTGACCGTGG
GATGGCCCAGCTTGGTGCCTGCAATGACGTAGTTGGCGGTGAGCTTGGGCTCGTTGGCGGCGAGA
AACGCGGCAATGGTGGCCTTGGCGTCTGCCACGGGGATATCTAGCCGTCGGGCCACCACCTGGTA
GGTCACCACCTTGCCGGTGTGCTCAAAGAGCTCCAGGGCGAGGAA
Found at i:107381 original size:21 final size:21
Alignment explanation
Indices: 107357--107398 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
107347 GGTGTTGGAA
107357 GCGTCCTTGGTGGAGTCCTTG
1 GCGTCCTTGGTGGAGTCCTTG
107378 GCGTCCTTGGTGGAGTCCTTG
1 GCGTCCTTGGTGGAGTCCTTG
107399 TTGGCTGGTG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.05, C:0.24, G:0.38, T:0.33
Consensus pattern (21 bp):
GCGTCCTTGGTGGAGTCCTTG
Left flanking sequence: Indices 106857 -- 107356
ACCCGTCCTCGTCCACCTCCTGGGTGACCTCTTCCTCGGGCTCCTCGGCCTCAAATAGCGGCGGC
TCGTCGGGCGGGGTGTCCTGCTTGGTCGCTGTGGTCTCTGTGGGCTCAGCAGCTGGTTCCTTGGG
CTGTTCGTTGTCGTCTTTCCCCACCGCTTTCTCCTCTTTCCCCTCCTTTCCCTCCTCCTTCCCCT
CCTGTGCCTCTTTGTCGTCCTCCAGGAAGAAGTCGTCGTCGTTGTCGAAGATGTTCGCTAACTCC
GCCATCTGCTCCTTCAGCTTCTGTTTGTGCTCGTGGTCCACGGCCTCGTCCCGGGCCTCGTCCTC
GTTGTGGGTGGCAACAATCACCCGCTCCCGGGGCTCCCTCTTCTCCTCCTTGCGCAGTTTGTACA
CGAGTTTGGGCCTGCTGGCGGGCTTAGCGGTGGCCAGCGGCGAGTCGGCCTTTCGTTTGCGGGAC
ACGTACATCAGCGAGAGCGTCAGTGTCTTTTTAGGGGTGTTGGAA
Right flanking sequence: Indices 107399 -- 107898
TTGGCTGGTGTGCCCGAGGTGCTGGCGGAGGTGCTCGCACCTCCCTTGGCCACGGGCGACGAGCC
CAATTCTATCGGTTTCTTGGCCTCGGTCTTGACACGTCCCCGGGTCTCAGCCACCGCCAAGCACT
TGGCGGGGCCCTTGATGACGAGCTTGGTGGCGTCTCGTGGGAGCTCCTTGAGCTGTTCCGCCTCG
CACCACCCGACCTCCGCGAGGGTGAACGTCCCGGAGGTGCTGTGGAGCGAGTACACCGCGGTCTC
GCACACCTCCTCAAACAGCGCCTTTTCCTCCTCAAGCACCGCCTGAGGCACCACCTTGACCGTGG
GATGGCCCAGCTTGGTGCCTGCAATGACGTAGTTGGCGGTGAGCTTGGGCTCGTTGGCGGCGAGA
AACGCGGCAATGGTGGCCTTGGCGTCTGCCACGGGGATATCTAGCCGTCGGGCCACCACCTGGTA
GGTCACCACCTTGCCGGTGTGCTCAAAGAGCTCCAGGGCGAGGAA
Found at i:108009 original size:13 final size:13
Alignment explanation
Indices: 107955--108011 Score: 55
Period size: 13 Copynumber: 4.4 Consensus size: 13
107945 AAGGAGAGGG
* *
107955 AGGAGGGGAAAGG
1 AGGAGAGGAAAGA
107968 AGAGAGAGGAAAG-
1 AG-GAGAGGAAAGA
107981 AGGAGA-GAAAGAA
1 AGGAGAGGAAAG-A
*
107994 AGGAGAGGAGAGA
1 AGGAGAGGAAAGA
108007 AGGAG
1 AGGAG
108012 GAAGCGGAGA
Statistics
Matches: 38, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
11 5 0.13
12 4 0.11
13 16 0.42
14 13 0.34
ACGTcount: A:0.49, C:0.00, G:0.51, T:0.00
Consensus pattern (13 bp):
AGGAGAGGAAAGA
Left flanking sequence: Indices 107455 -- 107954
CGACGAGCCCAATTCTATCGGTTTCTTGGCCTCGGTCTTGACACGTCCCCGGGTCTCAGCCACCG
CCAAGCACTTGGCGGGGCCCTTGATGACGAGCTTGGTGGCGTCTCGTGGGAGCTCCTTGAGCTGT
TCCGCCTCGCACCACCCGACCTCCGCGAGGGTGAACGTCCCGGAGGTGCTGTGGAGCGAGTACAC
CGCGGTCTCGCACACCTCCTCAAACAGCGCCTTTTCCTCCTCAAGCACCGCCTGAGGCACCACCT
TGACCGTGGGATGGCCCAGCTTGGTGCCTGCAATGACGTAGTTGGCGGTGAGCTTGGGCTCGTTG
GCGGCGAGAAACGCGGCAATGGTGGCCTTGGCGTCTGCCACGGGGATATCTAGCCGTCGGGCCAC
CACCTGGTAGGTCACCACCTTGCCGGTGTGCTCAAAGAGCTCCAGGGCGAGGAACTCGGTGGGGG
TCATGAGGTGCAGTGCGACGCGTCGCGGTGAAGAAAAGGAGAGGG
Right flanking sequence: Indices 108012 -- 108511
GAAGCGGAGAGGAGGAAAGGCACAGCAGCACACGGTTCGGGTGTTTCGTCGATAGCCACCTGAGA
GAGTAGAATAGGTGTAGTGTAGGAATGAATCACCAAGTGAGACATCACCAGTTTGAAAAAAAGCG
AGAGGGGACGGTTTATAATTGTCACTGTGGTGGACCCAACGCGTTTTCAGGACTCGGAGGCACAC
AAGACACACCTTTTGATAGTCCTATTCAGATTAATCTCCCTTTACTCCCACTTTTCGTTTTCTCA
CCCTCGTTTCCCTCACATCCCTACACCTCTTTTCCTTCCACACCCACACATTTTTCAAACCACCA
TAAGAAAACAACCACACCCAACCCACTATAAACATATTCCCACCTTCTCTTCACCTCCTCTCCAC
CTCTACACTTGCTCCACTACCCCCTACCCACTACTACCCCCACCACTGCGGACTCTGCCCACACC
TATGACACCGTGCCTGCACCTCACCCACCTTTTTTCACCAAACAC
Found at i:110494 original size:25 final size:25
Alignment explanation
Indices: 110460--110507 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
110450 GAATGCAGTC
* *
110460 AGTGAAGCCTACGCTTCTTTTTTGT
1 AGTGAAGCCTACGCCTCTATTTTGT
110485 AGTGAAGCCTACGCCTCTATTTT
1 AGTGAAGCCTACGCCTCTATTTT
110508 CCAAGATCTG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.19, C:0.23, G:0.19, T:0.40
Consensus pattern (25 bp):
AGTGAAGCCTACGCCTCTATTTTGT
Left flanking sequence: Indices 109960 -- 110459
TCATCATCAAGGGCATCCAGCCGCGCCAGTTCGCTGTGCCCATCGATACTGGTAACTACGAGGCG
CTCAAGCCGCTGACGGTGTCGCTGACCAACCTGAGCCAGAACCACAAGCTTCCTATTGGCCACAT
GGACCAGGAGAAGTTTGACCACGCGCTCAACGCGCTCACCGAGCTGATTCTCGACGACGGGTCCA
AGATCAGTGCCAACGAGGACTTTGTCACCCCGATAAACCGCTATGCCAGCGACATTTTGACCCGG
ATCTTGAACGACGTGTTTGAGGCCAACGACAATCTCATGGACGACTCGTTGTTCCGGTTCTACAA
CAGCCACTGGCTTCCGGAGGTCGTGTACGCCAACCCGCTGTTGTTGGAGCTGGGGTTGATCGACA
TCCGCTGGTTGAAGTATTTAGTGTAATGTATTATTAGAGAGAAAGCACGGTAAGGTGGGAGATGG
CTTGAGTCTAAGGGGAATGGGTAATAAGGGTGAGAGAATGCAGTC
Right flanking sequence: Indices 110508 -- 111007
CCAAGATCTGTGTGTTATATCGGGGTTTGGAACCCAACTGAGACGGTTTAATCAATCTCATAGAC
CGTTTGATTATTGTCATAGACAAGTAGTCATTTAAAAGAACTATTGCATTTCTTCGAGTCATTCT
TGTGGATCAATAGGAAGCAATTCTCATTACAGATGGATAAATAGTAGAATAGACAGCTAAATTTC
ATCATGTCTGTGATCTTTGTGGCCATCAAGACAGGGAAAGGGCTAACAGAGCGTTATCACGAAAA
CGCTTTCTAATGACAGTTGAAGCAGTAATTAGATAGAGGTTCGTTCAATGGCTAGCTACGATTTT
GAGAGTAAAGTATTCCATGCCATCCAATTATCAGTCGCAGATGGTTAGAATCTCCATTTCACGGA
CCGAATCTACTTCCACGCGCCAAACCACAAAACAGTGCCCACACGGCTCACAACTACAACCAAAC
TACCACCAACCTACTCCTCTACAACTCCACTACAACCACTCTACT
Found at i:110985 original size:30 final size:30
Alignment explanation
Indices: 110951--111012 Score: 74
Period size: 30 Copynumber: 2.1 Consensus size: 30
110941 CGGCTCACAA
*
110951 CTACAAC-CAAACTACCACCAAC-CTACTCCT
1 CTACAACTC-AACTACAACC-ACTCTACTCCT
*
110981 CTACAACTCCACTACAACCACTCTACTCCT
1 CTACAACTCAACTACAACCACTCTACTCCT
111011 CT
1 CT
111013 CCCCCGCCTC
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
29 2 0.07
30 25 0.89
31 1 0.04
ACGTcount: A:0.32, C:0.47, G:0.00, T:0.21
Consensus pattern (30 bp):
CTACAACTCAACTACAACCACTCTACTCCT
Left flanking sequence: Indices 110451 -- 110950
AATGCAGTCAGTGAAGCCTACGCTTCTTTTTTGTAGTGAAGCCTACGCCTCTATTTTCCAAGATC
TGTGTGTTATATCGGGGTTTGGAACCCAACTGAGACGGTTTAATCAATCTCATAGACCGTTTGAT
TATTGTCATAGACAAGTAGTCATTTAAAAGAACTATTGCATTTCTTCGAGTCATTCTTGTGGATC
AATAGGAAGCAATTCTCATTACAGATGGATAAATAGTAGAATAGACAGCTAAATTTCATCATGTC
TGTGATCTTTGTGGCCATCAAGACAGGGAAAGGGCTAACAGAGCGTTATCACGAAAACGCTTTCT
AATGACAGTTGAAGCAGTAATTAGATAGAGGTTCGTTCAATGGCTAGCTACGATTTTGAGAGTAA
AGTATTCCATGCCATCCAATTATCAGTCGCAGATGGTTAGAATCTCCATTTCACGGACCGAATCT
ACTTCCACGCGCCAAACCACAAAACAGTGCCCACACGGCTCACAA
Right flanking sequence: Indices 111013 -- 111512
CCCCCGCCTCCCTCGCCTCCCCCGCCTCTTCTCCTCCCCCGCCTCTCCTCCCCGTTACCTGTCAG
CCCTACATGAGACCCATCACAACCGCCAAACCGCCAAAACCGCCACAACCACTTTTTAAAAACCA
ACTCAGCTCCGTCCCAGACCCCCAAACCCACCTGTAACCCACACCACCCGCCGCCGTCCCCGCTC
CCAAATCTCAGTGCTACATCGTTCCCGGTTATGAGCTTTTTCGCAGTAAAACCACTCAACCACCT
ATCCCACCAACTAAAATGGGCTGGTTTGGCAGCAACAAAGTGTCGCCCGTGTCCCAGGTCCTGGA
ACAGGAGGCGCAGCCGCAGTATCTCGAGGACCTTCCCCCGAAATTCGACGACCTGGTCCCGCCCC
AGGACCAGCAACAGCCCCAGCTCAAGATCCTGTTGGCGGACTTCAACGTCAACACCTACCTCGGC
ATGCCGTGTTTCCGCGAGGCGATGCTCACGGGGTTCCAGGCGATG
Found at i:111040 original size:14 final size:15
Alignment explanation
Indices: 111008--111065 Score: 57
Period size: 15 Copynumber: 3.8 Consensus size: 15
110998 CCACTCTACT
*
111008 CCTCTCC-CCCGCCTC
1 CCTCTCCTCCC-CCGC
*
111023 CCTCGCCTCCCCCGC
1 CCTCTCCTCCCCCGC
111038 CTCTTCTCCTCCCCCG-
1 C-C-TCTCCTCCCCCGC
111054 CCTCTCCTCCCC
1 CCTCTCCTCCCC
111066 GTTACCTGTC
Statistics
Matches: 37, Mismatches: 3, Indels: 7
0.79 0.06 0.15
Matches are distributed among these distances:
14 10 0.27
15 11 0.30
16 5 0.14
17 11 0.30
ACGTcount: A:0.00, C:0.71, G:0.07, T:0.22
Consensus pattern (15 bp):
CCTCTCCTCCCCCGC
Left flanking sequence: Indices 110508 -- 111007
CCAAGATCTGTGTGTTATATCGGGGTTTGGAACCCAACTGAGACGGTTTAATCAATCTCATAGAC
CGTTTGATTATTGTCATAGACAAGTAGTCATTTAAAAGAACTATTGCATTTCTTCGAGTCATTCT
TGTGGATCAATAGGAAGCAATTCTCATTACAGATGGATAAATAGTAGAATAGACAGCTAAATTTC
ATCATGTCTGTGATCTTTGTGGCCATCAAGACAGGGAAAGGGCTAACAGAGCGTTATCACGAAAA
CGCTTTCTAATGACAGTTGAAGCAGTAATTAGATAGAGGTTCGTTCAATGGCTAGCTACGATTTT
GAGAGTAAAGTATTCCATGCCATCCAATTATCAGTCGCAGATGGTTAGAATCTCCATTTCACGGA
CCGAATCTACTTCCACGCGCCAAACCACAAAACAGTGCCCACACGGCTCACAACTACAACCAAAC
TACCACCAACCTACTCCTCTACAACTCCACTACAACCACTCTACT
Right flanking sequence: Indices 111066 -- 111565
GTTACCTGTCAGCCCTACATGAGACCCATCACAACCGCCAAACCGCCAAAACCGCCACAACCACT
TTTTAAAAACCAACTCAGCTCCGTCCCAGACCCCCAAACCCACCTGTAACCCACACCACCCGCCG
CCGTCCCCGCTCCCAAATCTCAGTGCTACATCGTTCCCGGTTATGAGCTTTTTCGCAGTAAAACC
ACTCAACCACCTATCCCACCAACTAAAATGGGCTGGTTTGGCAGCAACAAAGTGTCGCCCGTGTC
CCAGGTCCTGGAACAGGAGGCGCAGCCGCAGTATCTCGAGGACCTTCCCCCGAAATTCGACGACC
TGGTCCCGCCCCAGGACCAGCAACAGCCCCAGCTCAAGATCCTGTTGGCGGACTTCAACGTCAAC
ACCTACCTCGGCATGCCGTGTTTCCGCGAGGCGATGCTCACGGGGTTCCAGGCGATGGGGGTGCT
TGGGGTGGTGACGTTTTTGATCCACAAACAGGTGGGCCGCTCGGT
Found at i:111048 original size:17 final size:17
Alignment explanation
Indices: 111011--111063 Score: 70
Period size: 17 Copynumber: 3.1 Consensus size: 17
111001 CTCTACTCCT
* *
111011 CTCCCCCGCCTCCCTCGC
1 CTCCCCCGCCT-CTTCTC
111029 CTCCCCCGCCTCTTCTC
1 CTCCCCCGCCTCTTCTC
*
111046 CTCCCCCGCCTCTCCTC
1 CTCCCCCGCCTCTTCTC
111063 C
1 C
111064 CCGTTACCTG
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
17 21 0.66
18 11 0.34
ACGTcount: A:0.00, C:0.70, G:0.08, T:0.23
Consensus pattern (17 bp):
CTCCCCCGCCTCTTCTC
Left flanking sequence: Indices 110511 -- 111010
AGATCTGTGTGTTATATCGGGGTTTGGAACCCAACTGAGACGGTTTAATCAATCTCATAGACCGT
TTGATTATTGTCATAGACAAGTAGTCATTTAAAAGAACTATTGCATTTCTTCGAGTCATTCTTGT
GGATCAATAGGAAGCAATTCTCATTACAGATGGATAAATAGTAGAATAGACAGCTAAATTTCATC
ATGTCTGTGATCTTTGTGGCCATCAAGACAGGGAAAGGGCTAACAGAGCGTTATCACGAAAACGC
TTTCTAATGACAGTTGAAGCAGTAATTAGATAGAGGTTCGTTCAATGGCTAGCTACGATTTTGAG
AGTAAAGTATTCCATGCCATCCAATTATCAGTCGCAGATGGTTAGAATCTCCATTTCACGGACCG
AATCTACTTCCACGCGCCAAACCACAAAACAGTGCCCACACGGCTCACAACTACAACCAAACTAC
CACCAACCTACTCCTCTACAACTCCACTACAACCACTCTACTCCT
Right flanking sequence: Indices 111064 -- 111563
CCGTTACCTGTCAGCCCTACATGAGACCCATCACAACCGCCAAACCGCCAAAACCGCCACAACCA
CTTTTTAAAAACCAACTCAGCTCCGTCCCAGACCCCCAAACCCACCTGTAACCCACACCACCCGC
CGCCGTCCCCGCTCCCAAATCTCAGTGCTACATCGTTCCCGGTTATGAGCTTTTTCGCAGTAAAA
CCACTCAACCACCTATCCCACCAACTAAAATGGGCTGGTTTGGCAGCAACAAAGTGTCGCCCGTG
TCCCAGGTCCTGGAACAGGAGGCGCAGCCGCAGTATCTCGAGGACCTTCCCCCGAAATTCGACGA
CCTGGTCCCGCCCCAGGACCAGCAACAGCCCCAGCTCAAGATCCTGTTGGCGGACTTCAACGTCA
ACACCTACCTCGGCATGCCGTGTTTCCGCGAGGCGATGCTCACGGGGTTCCAGGCGATGGGGGTG
CTTGGGGTGGTGACGTTTTTGATCCACAAACAGGTGGGCCGCTCG
Found at i:111057 original size:9 final size:9
Alignment explanation
Indices: 111011--111040 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
111001 CTCTACTCCT
111011 CTCCCCCGC
1 CTCCCCCGC
*
111020 CTCCCTCGC
1 CTCCCCCGC
111029 CTCCCCCGC
1 CTCCCCCGC
111038 CTC
1 CTC
111041 TTCTCCTCCC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.00, C:0.73, G:0.10, T:0.17
Consensus pattern (9 bp):
CTCCCCCGC
Left flanking sequence: Indices 110511 -- 111010
AGATCTGTGTGTTATATCGGGGTTTGGAACCCAACTGAGACGGTTTAATCAATCTCATAGACCGT
TTGATTATTGTCATAGACAAGTAGTCATTTAAAAGAACTATTGCATTTCTTCGAGTCATTCTTGT
GGATCAATAGGAAGCAATTCTCATTACAGATGGATAAATAGTAGAATAGACAGCTAAATTTCATC
ATGTCTGTGATCTTTGTGGCCATCAAGACAGGGAAAGGGCTAACAGAGCGTTATCACGAAAACGC
TTTCTAATGACAGTTGAAGCAGTAATTAGATAGAGGTTCGTTCAATGGCTAGCTACGATTTTGAG
AGTAAAGTATTCCATGCCATCCAATTATCAGTCGCAGATGGTTAGAATCTCCATTTCACGGACCG
AATCTACTTCCACGCGCCAAACCACAAAACAGTGCCCACACGGCTCACAACTACAACCAAACTAC
CACCAACCTACTCCTCTACAACTCCACTACAACCACTCTACTCCT
Right flanking sequence: Indices 111041 -- 111540
TTCTCCTCCCCCGCCTCTCCTCCCCGTTACCTGTCAGCCCTACATGAGACCCATCACAACCGCCA
AACCGCCAAAACCGCCACAACCACTTTTTAAAAACCAACTCAGCTCCGTCCCAGACCCCCAAACC
CACCTGTAACCCACACCACCCGCCGCCGTCCCCGCTCCCAAATCTCAGTGCTACATCGTTCCCGG
TTATGAGCTTTTTCGCAGTAAAACCACTCAACCACCTATCCCACCAACTAAAATGGGCTGGTTTG
GCAGCAACAAAGTGTCGCCCGTGTCCCAGGTCCTGGAACAGGAGGCGCAGCCGCAGTATCTCGAG
GACCTTCCCCCGAAATTCGACGACCTGGTCCCGCCCCAGGACCAGCAACAGCCCCAGCTCAAGAT
CCTGTTGGCGGACTTCAACGTCAACACCTACCTCGGCATGCCGTGTTTCCGCGAGGCGATGCTCA
CGGGGTTCCAGGCGATGGGGGTGCTTGGGGTGGTGACGTTTTTGA
Found at i:111848 original size:9 final size:9
Alignment explanation
Indices: 111830--111898 Score: 95
Period size: 9 Copynumber: 7.7 Consensus size: 9
111820 ATGGAAATAG
*
111830 GTGGTAAAA
1 GTGGTGAAA
111839 GTGGTGAAA
1 GTGGTGAAA
*
111848 GTGGTTAAA
1 GTGGTGAAA
111857 GTGGTGAAA
1 GTGGTGAAA
111866 GTGGTGAAA
1 GTGGTGAAA
111875 GTGGTGAAA
1 GTGGTGAAA
*
111884 GTAGTTGAAA
1 GT-GGTGAAA
111894 G-GGTG
1 GTGGTG
111899 GGTGAATACT
Statistics
Matches: 54, Mismatches: 5, Indels: 3
0.87 0.08 0.05
Matches are distributed among these distances:
8 3 0.06
9 44 0.81
10 7 0.13
ACGTcount: A:0.33, C:0.00, G:0.42, T:0.25
Consensus pattern (9 bp):
GTGGTGAAA
Left flanking sequence: Indices 111330 -- 111829
GTCCTGGAACAGGAGGCGCAGCCGCAGTATCTCGAGGACCTTCCCCCGAAATTCGACGACCTGGT
CCCGCCCCAGGACCAGCAACAGCCCCAGCTCAAGATCCTGTTGGCGGACTTCAACGTCAACACCT
ACCTCGGCATGCCGTGTTTCCGCGAGGCGATGCTCACGGGGTTCCAGGCGATGGGGGTGCTTGGG
GTGGTGACGTTTTTGATCCACAAACAGGTGGGCCGCTCGGTCAACTGGGGTGTCGGCGGGTTCTT
TTTGGGCAACATCGTGGGGTTTGAGCAGTGTCGGCTGATCCGGCGGCGGTCGTTTGAGACGATGG
AGAAGGCGCGGCAGAAGAACGCCGAGCGCAACCAGGAGAAGTGGGACGAGAAGGCTGGTGACCAG
GCGCAACAGCAGTTTGAGGAGTTTAACAAGAGACGGTAGTGGAGGTTTGTACATAGTAATAGCAC
AAAGGATAGATGAAGGAAGTGGAAAAAGTGGTAAAATGGAAATAG
Right flanking sequence: Indices 111899 -- 112398
GGTGAATACTTTGTTTACTATAAATTTTATTGCCAATTACGTGACTACTGAAATTTTTATCACCA
ACCTTTCCCATTTTTAATACTTGATGCTTCCTGTTTATCGAATCCTCGAAGCAAGACTTGAAAAT
ATGCCTCCTGTATCACATTCATCGAAGTGGGTGAAATGGAGGCTTTAGGCTTTGAGAAATCTAGG
CTGGTTTGACGGTATTGGAGTTTGAACAGATATATCAAATATAGCTAGAGTTTTTGAAGTAACAA
CGCAATACATCACTGACATTCTTTTCATCTATTCTAAGGGTTTTCCAGATTTCTAACACATTTTC
TTCCCTTTTCCATAAAACTATCCTCAGCTCGTGGTTTTGTTCCCAGGGTGCTCAATAGATAGGGT
GCTCAATGAATGGTATCAAAGCTTGAGACAACACGGGCATTCAAAGTGGTTGCGTAGTTGCCTGA
ACATACACACTTTATCCTACAGAATCCAGTCCAATTACCCAACCC
Found at i:111851 original size:18 final size:18
Alignment explanation
Indices: 111809--111885 Score: 95
Period size: 18 Copynumber: 4.3 Consensus size: 18
111799 GGAAGTGGAA
*
111809 AAAGTGGTAAAA-TGG-A
1 AAAGTGGTAAAAGTGGTG
111825 AATAGGTGGTAAAAGTGGTG
1 AA-A-GTGGTAAAAGTGGTG
*
111845 AAAGTGGTTAAAGTGGTG
1 AAAGTGGTAAAAGTGGTG
*
111863 AAAGTGGTGAAAGTGGTG
1 AAAGTGGTAAAAGTGGTG
111881 AAAGT
1 AAAGT
111886 AGTTGAAAGG
Statistics
Matches: 54, Mismatches: 3, Indels: 6
0.86 0.05 0.10
Matches are distributed among these distances:
16 2 0.04
17 1 0.02
18 45 0.83
19 4 0.07
20 2 0.04
ACGTcount: A:0.39, C:0.00, G:0.38, T:0.23
Consensus pattern (18 bp):
AAAGTGGTAAAAGTGGTG
Left flanking sequence: Indices 111309 -- 111808
AAAGTGTCGCCCGTGTCCCAGGTCCTGGAACAGGAGGCGCAGCCGCAGTATCTCGAGGACCTTCC
CCCGAAATTCGACGACCTGGTCCCGCCCCAGGACCAGCAACAGCCCCAGCTCAAGATCCTGTTGG
CGGACTTCAACGTCAACACCTACCTCGGCATGCCGTGTTTCCGCGAGGCGATGCTCACGGGGTTC
CAGGCGATGGGGGTGCTTGGGGTGGTGACGTTTTTGATCCACAAACAGGTGGGCCGCTCGGTCAA
CTGGGGTGTCGGCGGGTTCTTTTTGGGCAACATCGTGGGGTTTGAGCAGTGTCGGCTGATCCGGC
GGCGGTCGTTTGAGACGATGGAGAAGGCGCGGCAGAAGAACGCCGAGCGCAACCAGGAGAAGTGG
GACGAGAAGGCTGGTGACCAGGCGCAACAGCAGTTTGAGGAGTTTAACAAGAGACGGTAGTGGAG
GTTTGTACATAGTAATAGCACAAAGGATAGATGAAGGAAGTGGAA
Right flanking sequence: Indices 111886 -- 112385
AGTTGAAAGGGTGGGTGAATACTTTGTTTACTATAAATTTTATTGCCAATTACGTGACTACTGAA
ATTTTTATCACCAACCTTTCCCATTTTTAATACTTGATGCTTCCTGTTTATCGAATCCTCGAAGC
AAGACTTGAAAATATGCCTCCTGTATCACATTCATCGAAGTGGGTGAAATGGAGGCTTTAGGCTT
TGAGAAATCTAGGCTGGTTTGACGGTATTGGAGTTTGAACAGATATATCAAATATAGCTAGAGTT
TTTGAAGTAACAACGCAATACATCACTGACATTCTTTTCATCTATTCTAAGGGTTTTCCAGATTT
CTAACACATTTTCTTCCCTTTTCCATAAAACTATCCTCAGCTCGTGGTTTTGTTCCCAGGGTGCT
CAATAGATAGGGTGCTCAATGAATGGTATCAAAGCTTGAGACAACACGGGCATTCAAAGTGGTTG
CGTAGTTGCCTGAACATACACACTTTATCCTACAGAATCCAGTCC
Found at i:112459 original size:12 final size:13
Alignment explanation
Indices: 112442--112473 Score: 57
Period size: 13 Copynumber: 2.5 Consensus size: 13
112432 CAGAAGTTTG
112442 CCATCGT-TTTTA
1 CCATCGTATTTTA
112454 CCATCGTATTTTA
1 CCATCGTATTTTA
112467 CCATCGT
1 CCATCGT
112474 GGTATTCCAC
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 7 0.37
13 12 0.63
ACGTcount: A:0.19, C:0.28, G:0.09, T:0.44
Consensus pattern (13 bp):
CCATCGTATTTTA
Left flanking sequence: Indices 111942 -- 112441
ACTACTGAAATTTTTATCACCAACCTTTCCCATTTTTAATACTTGATGCTTCCTGTTTATCGAAT
CCTCGAAGCAAGACTTGAAAATATGCCTCCTGTATCACATTCATCGAAGTGGGTGAAATGGAGGC
TTTAGGCTTTGAGAAATCTAGGCTGGTTTGACGGTATTGGAGTTTGAACAGATATATCAAATATA
GCTAGAGTTTTTGAAGTAACAACGCAATACATCACTGACATTCTTTTCATCTATTCTAAGGGTTT
TCCAGATTTCTAACACATTTTCTTCCCTTTTCCATAAAACTATCCTCAGCTCGTGGTTTTGTTCC
CAGGGTGCTCAATAGATAGGGTGCTCAATGAATGGTATCAAAGCTTGAGACAACACGGGCATTCA
AAGTGGTTGCGTAGTTGCCTGAACATACACACTTTATCCTACAGAATCCAGTCCAATTACCCAAC
CCACTCCTTCTTAATCTCTAACGTGAATGAAAAACCAGAAGTTTG
Right flanking sequence: Indices 112474 -- 112973
GGTATTCCACCTTACGTTCGTTAGGTAATCAGTAATCACCATGTAGTCCCACGGTAAGACATTCT
TAGATCTCTGTCTCAATTGAAATCAAATACCCGAAGCAATTAAAGCAGTGAAGCAAGTGAAGCAG
TAAATTCCCAGCCCACTACTACCCCTAAAAAGAACCAAACACGCAACAAGATCACTGCTTCCCAA
TGGCGCCCTCCACCGATCACCACCCTCACCCGGTGGTACAACTCCGACACCACTGCAAATGTCGC
AGCTACCCCAGTTTTTCGCAGCCACCAGGAGGTCATGTGAAGTTGAGGCCACCAGCAAAGAAGCG
TTGGGGGGTCTGGGGGGCGCCGCTTGCGGCCCCCCAGCAGCACTGGCACAATGGTACAATCACCG
ACGTAACTACTACACCACCCACCTTACTAGACTCTACCAGTACCCTTCCATACTCCTCCATACTC
CTCCATACTCTCCCATCCACTAACCTCTCCCACCACCACCACTAC
Found at i:112593 original size:17 final size:17
Alignment explanation
Indices: 112571--112604 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
112561 TCAAATACCC
*
112571 GAAGCAATTAAAGCAGT
1 GAAGCAAGTAAAGCAGT
*
112588 GAAGCAAGTGAAGCAGT
1 GAAGCAAGTAAAGCAGT
112605 AAATTCCCAG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.44, C:0.12, G:0.29, T:0.15
Consensus pattern (17 bp):
GAAGCAAGTAAAGCAGT
Left flanking sequence: Indices 112071 -- 112570
CTTTAGGCTTTGAGAAATCTAGGCTGGTTTGACGGTATTGGAGTTTGAACAGATATATCAAATAT
AGCTAGAGTTTTTGAAGTAACAACGCAATACATCACTGACATTCTTTTCATCTATTCTAAGGGTT
TTCCAGATTTCTAACACATTTTCTTCCCTTTTCCATAAAACTATCCTCAGCTCGTGGTTTTGTTC
CCAGGGTGCTCAATAGATAGGGTGCTCAATGAATGGTATCAAAGCTTGAGACAACACGGGCATTC
AAAGTGGTTGCGTAGTTGCCTGAACATACACACTTTATCCTACAGAATCCAGTCCAATTACCCAA
CCCACTCCTTCTTAATCTCTAACGTGAATGAAAAACCAGAAGTTTGCCATCGTTTTTACCATCGT
ATTTTACCATCGTGGTATTCCACCTTACGTTCGTTAGGTAATCAGTAATCACCATGTAGTCCCAC
GGTAAGACATTCTTAGATCTCTGTCTCAATTGAAATCAAATACCC
Right flanking sequence: Indices 112605 -- 113104
AAATTCCCAGCCCACTACTACCCCTAAAAAGAACCAAACACGCAACAAGATCACTGCTTCCCAAT
GGCGCCCTCCACCGATCACCACCCTCACCCGGTGGTACAACTCCGACACCACTGCAAATGTCGCA
GCTACCCCAGTTTTTCGCAGCCACCAGGAGGTCATGTGAAGTTGAGGCCACCAGCAAAGAAGCGT
TGGGGGGTCTGGGGGGCGCCGCTTGCGGCCCCCCAGCAGCACTGGCACAATGGTACAATCACCGA
CGTAACTACTACACCACCCACCTTACTAGACTCTACCAGTACCCTTCCATACTCCTCCATACTCC
TCCATACTCTCCCATCCACTAACCTCTCCCACCACCACCACTACCATGCACTACCAGTACCACCC
CCACCCCCACAACCTTCCCCCCACCACCTTCCTCCCATCTCCTCCCATCTCTCCCTTTTTCCTCC
CGTCTCTCCCTCTTTCCTCTCCCCCTTCCTCTCCCCCTCCTCCAC
Found at i:112944 original size:10 final size:10
Alignment explanation
Indices: 112910--112938 Score: 58
Period size: 10 Copynumber: 2.9 Consensus size: 10
112900 CCAGTACCCT
112910 TCCATACTCC
1 TCCATACTCC
112920 TCCATACTCC
1 TCCATACTCC
112930 TCCATACTC
1 TCCATACTC
112939 TCCCATCCAC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.21, C:0.48, G:0.00, T:0.31
Consensus pattern (10 bp):
TCCATACTCC
Left flanking sequence: Indices 112410 -- 112909
ATCTCTAACGTGAATGAAAAACCAGAAGTTTGCCATCGTTTTTACCATCGTATTTTACCATCGTG
GTATTCCACCTTACGTTCGTTAGGTAATCAGTAATCACCATGTAGTCCCACGGTAAGACATTCTT
AGATCTCTGTCTCAATTGAAATCAAATACCCGAAGCAATTAAAGCAGTGAAGCAAGTGAAGCAGT
AAATTCCCAGCCCACTACTACCCCTAAAAAGAACCAAACACGCAACAAGATCACTGCTTCCCAAT
GGCGCCCTCCACCGATCACCACCCTCACCCGGTGGTACAACTCCGACACCACTGCAAATGTCGCA
GCTACCCCAGTTTTTCGCAGCCACCAGGAGGTCATGTGAAGTTGAGGCCACCAGCAAAGAAGCGT
TGGGGGGTCTGGGGGGCGCCGCTTGCGGCCCCCCAGCAGCACTGGCACAATGGTACAATCACCGA
CGTAACTACTACACCACCCACCTTACTAGACTCTACCAGTACCCT
Right flanking sequence: Indices 112939 -- 113438
TCCCATCCACTAACCTCTCCCACCACCACCACTACCATGCACTACCAGTACCACCCCCACCCCCA
CAACCTTCCCCCCACCACCTTCCTCCCATCTCCTCCCATCTCTCCCTTTTTCCTCCCGTCTCTCC
CTCTTTCCTCTCCCCCTTCCTCTCCCCCTCCTCCACCATCCCACCTCTTCCCCCATCCCCCGCAC
GTGATTTTTCACACGCACCCACTCCGACGCACCTCGGGTGTCTCCCCACACTTAACCCGCGACTA
CCCCCCCCGTCCCCAGAACAAACTACACATGGACGGACACCAGGCCAAGGTCAAGGTGGCCTCGC
TCCGCACCAACTTGGTGCACTTGCCGCTGCTGGTGTGCAACCTTCTCTTCTCCGCCAACATCCCG
GCGCAGAACGTGGTGGTCGAGGTGGTGGAGAAGCGCCGCTCGGCGCACAAGCGCTACCTCGGGTG
GCTGGGGATGCCCCTGGGGAGCATCCAGGCGGTGGAGGTGGACGC
Found at i:113017 original size:14 final size:14
Alignment explanation
Indices: 112998--113031 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
112988 ACCACCCCCA
112998 CCCCCACAACCTTC
1 CCCCCACAACCTTC
*
113012 CCCCCACCACCTTC
1 CCCCCACAACCTTC
*
113026 CTCCCA
1 CCCCCA
113032 TCTCCTCCCA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.18, C:0.68, G:0.00, T:0.15
Consensus pattern (14 bp):
CCCCCACAACCTTC
Left flanking sequence: Indices 112498 -- 112997
GTAATCAGTAATCACCATGTAGTCCCACGGTAAGACATTCTTAGATCTCTGTCTCAATTGAAATC
AAATACCCGAAGCAATTAAAGCAGTGAAGCAAGTGAAGCAGTAAATTCCCAGCCCACTACTACCC
CTAAAAAGAACCAAACACGCAACAAGATCACTGCTTCCCAATGGCGCCCTCCACCGATCACCACC
CTCACCCGGTGGTACAACTCCGACACCACTGCAAATGTCGCAGCTACCCCAGTTTTTCGCAGCCA
CCAGGAGGTCATGTGAAGTTGAGGCCACCAGCAAAGAAGCGTTGGGGGGTCTGGGGGGCGCCGCT
TGCGGCCCCCCAGCAGCACTGGCACAATGGTACAATCACCGACGTAACTACTACACCACCCACCT
TACTAGACTCTACCAGTACCCTTCCATACTCCTCCATACTCCTCCATACTCTCCCATCCACTAAC
CTCTCCCACCACCACCACTACCATGCACTACCAGTACCACCCCCA
Right flanking sequence: Indices 113032 -- 113531
TCTCCTCCCATCTCTCCCTTTTTCCTCCCGTCTCTCCCTCTTTCCTCTCCCCCTTCCTCTCCCCC
TCCTCCACCATCCCACCTCTTCCCCCATCCCCCGCACGTGATTTTTCACACGCACCCACTCCGAC
GCACCTCGGGTGTCTCCCCACACTTAACCCGCGACTACCCCCCCCGTCCCCAGAACAAACTACAC
ATGGACGGACACCAGGCCAAGGTCAAGGTGGCCTCGCTCCGCACCAACTTGGTGCACTTGCCGCT
GCTGGTGTGCAACCTTCTCTTCTCCGCCAACATCCCGGCGCAGAACGTGGTGGTCGAGGTGGTGG
AGAAGCGCCGCTCGGCGCACAAGCGCTACCTCGGGTGGCTGGGGATGCCCCTGGGGAGCATCCAG
GCGGTGGAGGTGGACGCGGTGGTGGCCGGGGCGCTCCGCCTCGCCGACGGCGCCGAGGTGGTGCT
CAATGTCAAGTTGGGCACCGGGGAGGCGCTGGCGATTTCTCTCGA
Found at i:113074 original size:22 final size:20
Alignment explanation
Indices: 113034--113078 Score: 72
Period size: 20 Copynumber: 2.2 Consensus size: 20
113024 TCCTCCCATC
113034 TCCTCCCATCTCTCCCTTTT
1 TCCTCCCATCTCTCCCTTTT
* *
113054 TCCTCCCGTCTCTCCCTCTT
1 TCCTCCCATCTCTCCCTTTT
113074 TCCTC
1 TCCTC
113079 TCCCCCTTCC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.02, C:0.53, G:0.02, T:0.42
Consensus pattern (20 bp):
TCCTCCCATCTCTCCCTTTT
Left flanking sequence: Indices 112534 -- 113033
ATTCTTAGATCTCTGTCTCAATTGAAATCAAATACCCGAAGCAATTAAAGCAGTGAAGCAAGTGA
AGCAGTAAATTCCCAGCCCACTACTACCCCTAAAAAGAACCAAACACGCAACAAGATCACTGCTT
CCCAATGGCGCCCTCCACCGATCACCACCCTCACCCGGTGGTACAACTCCGACACCACTGCAAAT
GTCGCAGCTACCCCAGTTTTTCGCAGCCACCAGGAGGTCATGTGAAGTTGAGGCCACCAGCAAAG
AAGCGTTGGGGGGTCTGGGGGGCGCCGCTTGCGGCCCCCCAGCAGCACTGGCACAATGGTACAAT
CACCGACGTAACTACTACACCACCCACCTTACTAGACTCTACCAGTACCCTTCCATACTCCTCCA
TACTCCTCCATACTCTCCCATCCACTAACCTCTCCCACCACCACCACTACCATGCACTACCAGTA
CCACCCCCACCCCCACAACCTTCCCCCCACCACCTTCCTCCCATC
Right flanking sequence: Indices 113079 -- 113578
TCCCCCTTCCTCTCCCCCTCCTCCACCATCCCACCTCTTCCCCCATCCCCCGCACGTGATTTTTC
ACACGCACCCACTCCGACGCACCTCGGGTGTCTCCCCACACTTAACCCGCGACTACCCCCCCCGT
CCCCAGAACAAACTACACATGGACGGACACCAGGCCAAGGTCAAGGTGGCCTCGCTCCGCACCAA
CTTGGTGCACTTGCCGCTGCTGGTGTGCAACCTTCTCTTCTCCGCCAACATCCCGGCGCAGAACG
TGGTGGTCGAGGTGGTGGAGAAGCGCCGCTCGGCGCACAAGCGCTACCTCGGGTGGCTGGGGATG
CCCCTGGGGAGCATCCAGGCGGTGGAGGTGGACGCGGTGGTGGCCGGGGCGCTCCGCCTCGCCGA
CGGCGCCGAGGTGGTGCTCAATGTCAAGTTGGGCACCGGGGAGGCGCTGGCGATTTCTCTCGAGC
CGGAGACGGCGCTGGACTGGGAGCTCGTGGAGCTCCACGCCCAGA
Found at i:113100 original size:11 final size:12
Alignment explanation
Indices: 113063--113101 Score: 53
Period size: 12 Copynumber: 3.2 Consensus size: 12
113053 TTCCTCCCGT
*
113063 CTCTCCCTCTTTC
1 CTCTCCC-CCTTC
113076 CTCTCCCCCTTC
1 CTCTCCCCCTTC
113088 CTCTCCCCC-TC
1 CTCTCCCCCTTC
113099 CTC
1 CTC
113102 CACCATCCCA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
11 5 0.20
12 13 0.52
13 7 0.28
ACGTcount: A:0.00, C:0.64, G:0.00, T:0.36
Consensus pattern (12 bp):
CTCTCCCCCTTC
Left flanking sequence: Indices 112563 -- 113062
AAATACCCGAAGCAATTAAAGCAGTGAAGCAAGTGAAGCAGTAAATTCCCAGCCCACTACTACCC
CTAAAAAGAACCAAACACGCAACAAGATCACTGCTTCCCAATGGCGCCCTCCACCGATCACCACC
CTCACCCGGTGGTACAACTCCGACACCACTGCAAATGTCGCAGCTACCCCAGTTTTTCGCAGCCA
CCAGGAGGTCATGTGAAGTTGAGGCCACCAGCAAAGAAGCGTTGGGGGGTCTGGGGGGCGCCGCT
TGCGGCCCCCCAGCAGCACTGGCACAATGGTACAATCACCGACGTAACTACTACACCACCCACCT
TACTAGACTCTACCAGTACCCTTCCATACTCCTCCATACTCCTCCATACTCTCCCATCCACTAAC
CTCTCCCACCACCACCACTACCATGCACTACCAGTACCACCCCCACCCCCACAACCTTCCCCCCA
CCACCTTCCTCCCATCTCCTCCCATCTCTCCCTTTTTCCTCCCGT
Right flanking sequence: Indices 113102 -- 113601
CACCATCCCACCTCTTCCCCCATCCCCCGCACGTGATTTTTCACACGCACCCACTCCGACGCACC
TCGGGTGTCTCCCCACACTTAACCCGCGACTACCCCCCCCGTCCCCAGAACAAACTACACATGGA
CGGACACCAGGCCAAGGTCAAGGTGGCCTCGCTCCGCACCAACTTGGTGCACTTGCCGCTGCTGG
TGTGCAACCTTCTCTTCTCCGCCAACATCCCGGCGCAGAACGTGGTGGTCGAGGTGGTGGAGAAG
CGCCGCTCGGCGCACAAGCGCTACCTCGGGTGGCTGGGGATGCCCCTGGGGAGCATCCAGGCGGT
GGAGGTGGACGCGGTGGTGGCCGGGGCGCTCCGCCTCGCCGACGGCGCCGAGGTGGTGCTCAATG
TCAAGTTGGGCACCGGGGAGGCGCTGGCGATTTCTCTCGAGCCGGAGACGGCGCTGGACTGGGAG
CTCGTGGAGCTCCACGCCCAGACCATCGAGGACACGCTCTTGGCG
Found at i:113124 original size:17 final size:16
Alignment explanation
Indices: 113091--113129 Score: 51
Period size: 17 Copynumber: 2.4 Consensus size: 16
113081 CCCCTTCCTC
113091 TCCCCCTCCTCCACCA
1 TCCCCCTCCTCCACCA
* *
113107 TCCCACCTCTTCCCCCA
1 TCCC-CCTCCTCCACCA
113124 TCCCCC
1 TCCCCC
113130 GCACGTGATT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
16 6 0.30
17 14 0.70
ACGTcount: A:0.10, C:0.69, G:0.00, T:0.21
Consensus pattern (16 bp):
TCCCCCTCCTCCACCA
Left flanking sequence: Indices 112591 -- 113090
GCAAGTGAAGCAGTAAATTCCCAGCCCACTACTACCCCTAAAAAGAACCAAACACGCAACAAGAT
CACTGCTTCCCAATGGCGCCCTCCACCGATCACCACCCTCACCCGGTGGTACAACTCCGACACCA
CTGCAAATGTCGCAGCTACCCCAGTTTTTCGCAGCCACCAGGAGGTCATGTGAAGTTGAGGCCAC
CAGCAAAGAAGCGTTGGGGGGTCTGGGGGGCGCCGCTTGCGGCCCCCCAGCAGCACTGGCACAAT
GGTACAATCACCGACGTAACTACTACACCACCCACCTTACTAGACTCTACCAGTACCCTTCCATA
CTCCTCCATACTCCTCCATACTCTCCCATCCACTAACCTCTCCCACCACCACCACTACCATGCAC
TACCAGTACCACCCCCACCCCCACAACCTTCCCCCCACCACCTTCCTCCCATCTCCTCCCATCTC
TCCCTTTTTCCTCCCGTCTCTCCCTCTTTCCTCTCCCCCTTCCTC
Right flanking sequence: Indices 113130 -- 113629
GCACGTGATTTTTCACACGCACCCACTCCGACGCACCTCGGGTGTCTCCCCACACTTAACCCGCG
ACTACCCCCCCCGTCCCCAGAACAAACTACACATGGACGGACACCAGGCCAAGGTCAAGGTGGCC
TCGCTCCGCACCAACTTGGTGCACTTGCCGCTGCTGGTGTGCAACCTTCTCTTCTCCGCCAACAT
CCCGGCGCAGAACGTGGTGGTCGAGGTGGTGGAGAAGCGCCGCTCGGCGCACAAGCGCTACCTCG
GGTGGCTGGGGATGCCCCTGGGGAGCATCCAGGCGGTGGAGGTGGACGCGGTGGTGGCCGGGGCG
CTCCGCCTCGCCGACGGCGCCGAGGTGGTGCTCAATGTCAAGTTGGGCACCGGGGAGGCGCTGGC
GATTTCTCTCGAGCCGGAGACGGCGCTGGACTGGGAGCTCGTGGAGCTCCACGCCCAGACCATCG
AGGACACGCTCTTGGCGCAGGCGCGCTGTGTGTGCGTGGGGCAGC
Found at i:115254 original size:21 final size:21
Alignment explanation
Indices: 115223--115270 Score: 69
Period size: 21 Copynumber: 2.3 Consensus size: 21
115213 GGGGGTAGTG
* *
115223 ATGGAGCTAGAGATGGTGGTA
1 ATGGTGCTAGAGATGGTGCTA
*
115244 TTGGTGCTAGAGATGGTGCTA
1 ATGGTGCTAGAGATGGTGCTA
115265 ATGGTG
1 ATGGTG
115271 TTACTGGTGC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.23, C:0.06, G:0.42, T:0.29
Consensus pattern (21 bp):
ATGGTGCTAGAGATGGTGCTA
Left flanking sequence: Indices 114723 -- 115222
CCCGGCCAAGGCCCACTTGTTCAAGTGGTTGCAGCTGTGCTCGTGGCACAAGCCCGCGGTGCTCG
TGCTCGACAACTTGGACAAGGTGCTTGCGGCCGAGCAGGAGCAGGGCGACAGCCTGAAGCTGGTG
CAGCTCACCGAGTTTCTCGTGGGCCAGGTGGAGCGGATCCACGCCCAGCGCAACCTGAACCTTTG
TGTGTTGGCGCTGGCGCAGCTGAAGGAGCTGTTGAACAAGTTGTTGTTCCAGAGCCACCTCGTGG
AGAACTTTGAGCACTTGGCGGCGCCCGACAAGCAGATGCGGGCGGAGATCTTGGGGCGGTACTTG
GCCGAGCACTTGCGGTGTGGGGTGGACTTTGATATTATGGATATGGTGACCGAGACCGAGGGGTA
CTTGCCCAATGACTTGAAGATTTTGAGCGACCGGTTGTACCAGGAGGCGTTGTTTGACCAGGTGA
ATGAGAAAAGCAGAAGTGGTGTGAAGGCTATAGAAGGGGGTAGTG
Right flanking sequence: Indices 115271 -- 115770
TTACTGGTGCTACTACTGGTTCTGGTAACGACACGTCCATATCTGGTAACCACACGACGGGTCGC
GAGTTCGAGTCCGGGACCGGGTCCTCGCTGGCCACCGCCCCCGACACCGCCACCACCGTCTCGGT
GACAGCGTCCCGCGCCAACCTCACCCGCTGCCTCGAGGGGTACACCCCGTCCAACCTCCGCGGCG
TCAAGCTCCAGAAACTGGGCACCAATTGGCTGGACATCGGAGGCCTCACCGAAGCGAAAAACGTG
CTCTTGGAGACGCTCGAGTGGCCCACCAAGTACGCCCCCATCTTCTCGCTGTGCCCGTTGCGATT
GCGGCTGGGCATCTTGCTCTATGGCTACCCCGGTTGCGGCAAGACCCTCTTGGCACTGGCGGTGG
CGGGCCAGTGCGGGCTCAACTTCATCTCGATCAAGGGCCCGGAGATCCTCAACAAGTACATCGGT
GCGTCCGAGCAGCTGGTGCGTGAGCTCTTTGAGCGCGCCCAGGCC
Done.