Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold27
Parameters: 2 7 7 80 10 50 500
Length:  128639

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
17996--18147
6
25.3
6
86
0
178
33
42
24
0
1.55
17996--18147
12
12.7
12
92
0
223
33
42
24
0
1.55
17996--18147
18
8.4
18
89
0
214
33
42
24
0
1.55
18451--18486
18
2.0
18
89
10
56
30
22
27
19
1.98
39787--39812
12
2.2
12
100
0
52
0
26
42
30
1.56
40591--40648
27
2.1
27
100
0
116
6
18
56
17
1.62
59308--59427
60
2.0
60
100
0
240
25
15
30
30
1.95
62156--62182
9
3.0
9
100
0
54
11
11
55
22
1.66
71380--71444
16
3.9
16
71
11
58
36
20
27
15
1.92
71355--71447
35
2.7
35
81
8
127
33
17
27
21
1.96
74656--74697
12
3.5
12
93
6
68
14
40
35
9
1.78
75340--75434
18
5.3
18
89
0
100
32
22
38
6
1.79
75339--75434
36
2.7
36
86
0
120
32
21
38
7
1.81
77044--77099
29
1.9
29
85
7
78
7
1
60
30
1.33
77044--77107
14
4.3
15
82
7
78
6
1
60
31
1.30
77126--77184
11
5.3
11
78
11
66
15
1
47
35
1.55
77126--77212
35
2.5
35
94
1
149
16
3
48
32
1.63
77156--77229
11
6.7
11
80
7
71
14
2
52
29
1.56
77190--77229
21
2.0
20
90
5
62
12
2
60
25
1.45
77190--77229
10
3.9
10
90
6
62
12
2
60
25
1.45
77745--77778
17
2.0
17
88
0
50
35
52
0
11
1.38
78000--78052
24
2.2
24
93
0
88
16
67
7
7
1.38
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
84831--84875
15
3.1
15
83
6
65
22
33
17
26
1.96
86220--86308
11
8.1
11
88
7
119
28
11
33
26
1.91
86220--86308
44
2.0
44
91
0
142
28
11
33
26
1.91
90124--90174
15
3.5
15
97
2
95
33
54
5
5
1.48
93041--93067
12
2.2
12
100
0
54
22
18
37
22
1.95
93113--93177
15
4.3
15
75
14
62
1
35
35
27
1.67
123134--123172
12
3.2
12
88
0
60
25
25
23
25
2.00
123614--123657
12
3.7
12
81
0
52
36
40
20
2
1.65
124900--124976
27
2.9
27
81
11
86
14
35
19
31
1.92
124955--125007
27
2.0
27
84
0
70
9
47
13
30
1.74

Tables:   1

The End!