Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold39

Parameters: 2 7 7 80 10 50 500

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500

Length: 87172
ACGTcount: A:0.21, C:0.29, G:0.28, T:0.21


File 1 of 2

Found at i:73 original size:20 final size:20

Alignment explanation


    Indices: 45--83  Score: 53
    Period size: 20  Copynumber: 1.9  Consensus size: 20

         35 TGGGGTGGGA

                     *          
         45 TGGGGGGTTTCGGG-GGTTT
          1 TGGGGGGTTACGGGTGGTTT

                                
         64 TGGGGTGGTTACGGGTGGTT
          1 TGGGG-GGTTACGGGTGGTT

         84 GGTAGTGGGG


Statistics
Matches: 17,  Mismatches: 1, Indels: 2
        0.85            0.05        0.10

Matches are distributed among these distances:
  19    5  0.29
  20    8  0.47
  21    4  0.24

ACGTcount: A:0.03, C:0.05, G:0.56, T:0.36


Consensus pattern (20 bp):   
TGGGGGGTTACGGGTGGTTT

Left flanking sequence: Indices 1 -- 44
TAGGGGGTAGTGTTGGCGGTGGAGAAACGGGATGTGGGGTGGGA


Right flanking sequence: Indices 84 -- 583
GGTAGTGGGGTGGGTTTGTATAGGGGGGCCGGAAAAAGTAGAAGAAGGGGAGAAGAGGGGGGAAA
GAAGGGGTGTTTTTGTGATACTACGGGGGTACTGGGTGGTCTGGTAGGTTTGTTTTTCTTGCTGG
TTGGCTGGTTCGGCGAGAGCAGTACTCTGACACGTCAGGGTGTATAAATCTCGATCAATAGTGAA
GAGAGTGAAAACAACACAATTGAGCCGGTAGTAAACCGGATTGATTTGTTTGCTCTAGTCTAGTT
ACTTTATTTTACTTTAAAGCCGCGAATGGTCATAGAGGTCTCAGACTGTGTCTCGTTTTATCATT
CTCTCACAATTTCCCAATATTCCACAAAAATCAAAGAAATATCCAGCCAACTTATCCAACCAAAA
CTTCTCCAACCAAAGCCAGTTTGGCGATTAAAATTACACACACTCGCTCATGCTGTGACCCGACC
CCTGAGTCAGAAACTAAGGGGCCGAAAGCACCGTTGGGGGTGTTC



Found at i:481 original size:15 final size:15

Alignment explanation


    Indices: 457--487  Score: 53
    Period size: 15  Copynumber: 2.1  Consensus size: 15

        447 ATATCCAGCC

                           
        457 AACTTATCCAACCAA
          1 AACTTATCCAACCAA

                 *         
        472 AACTTCTCCAACCAA
          1 AACTTATCCAACCAA

             
        487 A
          1 A

        488 GCCAGTTTGG


Statistics
Matches: 15,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  15   15  1.00

ACGTcount: A:0.45, C:0.35, G:0.00, T:0.19


Consensus pattern (15 bp):   
AACTTATCCAACCAA

Left flanking sequence: Indices 1 -- 456
TAGGGGGTAGTGTTGGCGGTGGAGAAACGGGATGTGGGGTGGGATGGGGGGTTTCGGGGGTTTTG
GGGTGGTTACGGGTGGTTGGTAGTGGGGTGGGTTTGTATAGGGGGGCCGGAAAAAGTAGAAGAAG
GGGAGAAGAGGGGGGAAAGAAGGGGTGTTTTTGTGATACTACGGGGGTACTGGGTGGTCTGGTAG
GTTTGTTTTTCTTGCTGGTTGGCTGGTTCGGCGAGAGCAGTACTCTGACACGTCAGGGTGTATAA
ATCTCGATCAATAGTGAAGAGAGTGAAAACAACACAATTGAGCCGGTAGTAAACCGGATTGATTT
GTTTGCTCTAGTCTAGTTACTTTATTTTACTTTAAAGCCGCGAATGGTCATAGAGGTCTCAGACT
GTGTCTCGTTTTATCATTCTCTCACAATTTCCCAATATTCCACAAAAATCAAAGAAATATCCAGC
C


Right flanking sequence: Indices 488 -- 987
GCCAGTTTGGCGATTAAAATTACACACACTCGCTCATGCTGTGACCCGACCCCTGAGTCAGAAAC
TAAGGGGCCGAAAGCACCGTTGGGGGTGTTCTTTTCGTTCTTAGCCTTGGTGGATCTCCTACTCA
AATCGAAGGGTACGAAATAAGGTATGGAATAGATGGAGGTCCCAAAGTCGGGAGACTCTATTCTA
TAGTAGAACAATAAATAGTAGAGTAATTTCCAGGAATATAGGTTGCGTAATCTAGTCGGGTTTAC
ATTCCTGTAACTACCTCATAATTAGATGGCTACCGTTGGCTAGGTGGTAACCAAGTACACGGGAG
CCAACAGCTCATACACATCCTCATACACATCCTCATACATATTCATCATATTCACCACACACAAT
TCTCATACATTACTCACACATCCTCATGTTCACAATTTGTTAAACACCGGCACCAACGCCTGCTC
TATAAGCTTTATCACGTTGTCCGCCTGCGGCACGTCGTGGCCCCC



Found at i:837 original size:12 final size:12

Alignment explanation


    Indices: 820--851  Score: 64
    Period size: 12  Copynumber: 2.7  Consensus size: 12

        810 GAGCCAACAG

                        
        820 CTCATACACATC
          1 CTCATACACATC

                        
        832 CTCATACACATC
          1 CTCATACACATC

                    
        844 CTCATACA
          1 CTCATACA

        852 TATTCATCAT


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   20  1.00

ACGTcount: A:0.34, C:0.41, G:0.00, T:0.25


Consensus pattern (12 bp):   
CTCATACACATC

Left flanking sequence: Indices 320 -- 819
TGATTTGTTTGCTCTAGTCTAGTTACTTTATTTTACTTTAAAGCCGCGAATGGTCATAGAGGTCT
CAGACTGTGTCTCGTTTTATCATTCTCTCACAATTTCCCAATATTCCACAAAAATCAAAGAAATA
TCCAGCCAACTTATCCAACCAAAACTTCTCCAACCAAAGCCAGTTTGGCGATTAAAATTACACAC
ACTCGCTCATGCTGTGACCCGACCCCTGAGTCAGAAACTAAGGGGCCGAAAGCACCGTTGGGGGT
GTTCTTTTCGTTCTTAGCCTTGGTGGATCTCCTACTCAAATCGAAGGGTACGAAATAAGGTATGG
AATAGATGGAGGTCCCAAAGTCGGGAGACTCTATTCTATAGTAGAACAATAAATAGTAGAGTAAT
TTCCAGGAATATAGGTTGCGTAATCTAGTCGGGTTTACATTCCTGTAACTACCTCATAATTAGAT
GGCTACCGTTGGCTAGGTGGTAACCAAGTACACGGGAGCCAACAG


Right flanking sequence: Indices 852 -- 1351
TATTCATCATATTCACCACACACAATTCTCATACATTACTCACACATCCTCATGTTCACAATTTG
TTAAACACCGGCACCAACGCCTGCTCTATAAGCTTTATCACGTTGTCCGCCTGCGGCACGTCGTG
GCCCCCGCGCCACGACACCTCCGACAGGTTCGGGAACCCCTTGGCGAGGTTCTGCGACCCCACCA
GCGGCACCACAAAGTCCATGAGCCCGTACACCACCACCACCTTGGTGCTGTAGTCCGGCGGAAGC
ACAAAGTACTTCTGGAGGGCGCTCAGCAACTTGAACCCGGACATACAGACGGCAAACTTGAACGG
GGGCTGGCCTAGCTCTTTGGGGACGAGCACCGTGAGCATCGCTGCCACCACGCTCCCCTGGCTGA
AGCCAATGATCCCCACGTACGGCCCGTTGGTGCGGATGTACTCCAAGATCCACGCCAACGAGTCC
TCGATCCCGGGGGCCGTGGGCACAGAACCGGGTTCGTACTGCCAC



Found at i:1797 original size:12 final size:12

Alignment explanation


    Indices: 1780--1811  Score: 64
    Period size: 12  Copynumber: 2.7  Consensus size: 12

       1770 GAGGCTCGGA

                        
       1780 GGTGGTTGTAGG
          1 GGTGGTTGTAGG

                        
       1792 GGTGGTTGTAGG
          1 GGTGGTTGTAGG

                    
       1804 GGTGGTTG
          1 GGTGGTTG

       1812 CACATGGTAC


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   20  1.00

ACGTcount: A:0.06, C:0.00, G:0.59, T:0.34


Consensus pattern (12 bp):   
GGTGGTTGTAGG

Left flanking sequence: Indices 1280 -- 1779
TACTCCAAGATCCACGCCAACGAGTCCTCGATCCCGGGGGCCGTGGGCACAGAACCGGGTTCGTA
CTGCCACCAGCACCGGTTGAGCCCGCGCTCCACCAACAGCTGCCACTTGGCGTCCGCCTCGTGCT
CGGTGGGGCCCAATTTCTGGAACACTTTGTCGCGGCCCGGGATCACAAGCGGAGGATCCACGTAC
TCGAGCTCGAACCCGTGGGCACGCATCATCTTCTCGAGCGGAGCACACCGTTTGCGGAGCCGCTC
GGCGTTCTGGAGGAACCCTCCCAAGCAGAGCACTTTCATGGTGAGTTCAAGGGTCAATGGTGGAT
TCAATGGTGATTTCGAATTCTACAATGGTGACGGTTAACGGTTTCATATGACGTGGGGAAAATGC
GGGGTACAGGGTGGGATGAGATCTAGGAAGAGGGGGGAAGGGAATAGAGGGGGGGTTGTTGGAGG
TGGTTCTGGCGGGGTGGTGTGGTTGCGAGGCCATTGAGGCTCGGA


Right flanking sequence: Indices 1812 -- 2311
CACATGGTACTATCGGAGTTAACGGAACGGAGATTCATATGTAAGGAGAACGGAGATATACTGAG
AAGTGAGTTTTCATATGAACGGAGAACGGAGCATGAATTGTAGGTAAGGCACCAGGCACTACTTG
AAGGGGGCACTAGTTCTGAAAAGGCACTAGTTCTGAAGCGGCACTTGTTCTGAGAAAGCACTAAT
TCTGAAGAGGCACTAGTTCTAAAGAGGCACTAGTTCTGAATCAATATACACTACCACTTGTGGCC
CGCCTTCAGGGTTAAAAGCCAGCGGGCCAAAGGCACTTTTGCTAAGCTTCTTGTCGTTAGCCATG
GATTCTTACTCAGATCGAATGGTACAAAAAGGGGTACAACAGACGGTTATGGGATTAGATGAGAA
TCCAAAAGTCAGAGACTCTATTCTATGGTGTAACACTATCCAGGAGTGTGGTTCATGCAACCAAG
GTTTACATCACTGTTACTACCTCGTAGTTGAATGGCCACCGTATT



Found at i:1969 original size:17 final size:17

Alignment explanation


    Indices: 1947--2046  Score: 123
    Period size: 17  Copynumber: 5.9  Consensus size: 17

       1937 ACTTGAAGGG

                             
       1947 GGCACTAGTTCTGAAAA
          1 GGCACTAGTTCTGAAAA

                           **
       1964 GGCACTAGTTCTGAAGC
          1 GGCACTAGTTCTGAAAA

                  *           
       1981 GGCACTTGTTCTGAGAAA
          1 GGCACTAGTTCTGA-AAA

                   *       * 
       1999 -GCACTAATTCTGAAGA
          1 GGCACTAGTTCTGAAAA

                              
       2015 GGCACTAGTTCT-AAAGA
          1 GGCACTAGTTCTGAAA-A

                           
       2032 GGCACTAGTTCTGAA
          1 GGCACTAGTTCTGAA

       2047 TCAATATACA


Statistics
Matches: 69,  Mismatches: 10, Indels: 7
        0.80            0.12        0.08

Matches are distributed among these distances:
  16    4  0.06
  17   62  0.90
  18    3  0.04

ACGTcount: A:0.31, C:0.19, G:0.25, T:0.25


Consensus pattern (17 bp):   
GGCACTAGTTCTGAAAA

Left flanking sequence: Indices 1447 -- 1946
CGGGATCACAAGCGGAGGATCCACGTACTCGAGCTCGAACCCGTGGGCACGCATCATCTTCTCGA
GCGGAGCACACCGTTTGCGGAGCCGCTCGGCGTTCTGGAGGAACCCTCCCAAGCAGAGCACTTTC
ATGGTGAGTTCAAGGGTCAATGGTGGATTCAATGGTGATTTCGAATTCTACAATGGTGACGGTTA
ACGGTTTCATATGACGTGGGGAAAATGCGGGGTACAGGGTGGGATGAGATCTAGGAAGAGGGGGG
AAGGGAATAGAGGGGGGGTTGTTGGAGGTGGTTCTGGCGGGGTGGTGTGGTTGCGAGGCCATTGA
GGCTCGGAGGTGGTTGTAGGGGTGGTTGTAGGGGTGGTTGCACATGGTACTATCGGAGTTAACGG
AACGGAGATTCATATGTAAGGAGAACGGAGATATACTGAGAAGTGAGTTTTCATATGAACGGAGA
ACGGAGCATGAATTGTAGGTAAGGCACCAGGCACTACTTGAAGGG


Right flanking sequence: Indices 2047 -- 2546
TCAATATACACTACCACTTGTGGCCCGCCTTCAGGGTTAAAAGCCAGCGGGCCAAAGGCACTTTT
GCTAAGCTTCTTGTCGTTAGCCATGGATTCTTACTCAGATCGAATGGTACAAAAAGGGGTACAAC
AGACGGTTATGGGATTAGATGAGAATCCAAAAGTCAGAGACTCTATTCTATGGTGTAACACTATC
CAGGAGTGTGGTTCATGCAACCAAGGTTTACATCACTGTTACTACCTCGTAGTTGAATGGCCACC
GTATTTAGTTAAATGCAACCAGATATGGGATTCCAGGTCCAAAATACAGTTATGGATCTTTCTCC
ACTCACTGAAGCACTACTGTCCCACTCTCAACAGTCCATAGCTAATGAGTGCCCCTCAGAGCAAT
CTCAACACCAGTACCCTACCTCCTAATCCAAGTGTAGACCCACCTAAACTTCCTATTGGCGATTG
CGCAATTCTCCATCCCGTCTGGCCAGCCCATCAACCCCTTTAAGC



Found at i:1992 original size:34 final size:34

Alignment explanation


    Indices: 1947--2046  Score: 141
    Period size: 34  Copynumber: 2.9  Consensus size: 34

       1937 ACTTGAAGGG

                                             *
       1947 GGCACTAGTTCTGAAAAGGCACTAGTTCTGAAGC
          1 GGCACTAGTTCTGAAAAGGCACTAGTTCTGAAGA

                  *                  *         
       1981 GGCACTTGTTCTGAGAAA-GCACTAATTCTGAAGA
          1 GGCACTAGTTCTGA-AAAGGCACTAGTTCTGAAGA

                                             
       2015 GGCACTAGTTCT-AAAGAGGCACTAGTTCTGAA
          1 GGCACTAGTTCTGAAA-AGGCACTAGTTCTGAA

       2047 TCAATATACA


Statistics
Matches: 58,  Mismatches: 5, Indels: 6
        0.84            0.07        0.09

Matches are distributed among these distances:
  32    2  0.03
  33    2  0.03
  34   51  0.88
  35    3  0.05

ACGTcount: A:0.31, C:0.19, G:0.25, T:0.25


Consensus pattern (34 bp):   
GGCACTAGTTCTGAAAAGGCACTAGTTCTGAAGA

Left flanking sequence: Indices 1447 -- 1946
CGGGATCACAAGCGGAGGATCCACGTACTCGAGCTCGAACCCGTGGGCACGCATCATCTTCTCGA
GCGGAGCACACCGTTTGCGGAGCCGCTCGGCGTTCTGGAGGAACCCTCCCAAGCAGAGCACTTTC
ATGGTGAGTTCAAGGGTCAATGGTGGATTCAATGGTGATTTCGAATTCTACAATGGTGACGGTTA
ACGGTTTCATATGACGTGGGGAAAATGCGGGGTACAGGGTGGGATGAGATCTAGGAAGAGGGGGG
AAGGGAATAGAGGGGGGGTTGTTGGAGGTGGTTCTGGCGGGGTGGTGTGGTTGCGAGGCCATTGA
GGCTCGGAGGTGGTTGTAGGGGTGGTTGTAGGGGTGGTTGCACATGGTACTATCGGAGTTAACGG
AACGGAGATTCATATGTAAGGAGAACGGAGATATACTGAGAAGTGAGTTTTCATATGAACGGAGA
ACGGAGCATGAATTGTAGGTAAGGCACCAGGCACTACTTGAAGGG


Right flanking sequence: Indices 2047 -- 2546
TCAATATACACTACCACTTGTGGCCCGCCTTCAGGGTTAAAAGCCAGCGGGCCAAAGGCACTTTT
GCTAAGCTTCTTGTCGTTAGCCATGGATTCTTACTCAGATCGAATGGTACAAAAAGGGGTACAAC
AGACGGTTATGGGATTAGATGAGAATCCAAAAGTCAGAGACTCTATTCTATGGTGTAACACTATC
CAGGAGTGTGGTTCATGCAACCAAGGTTTACATCACTGTTACTACCTCGTAGTTGAATGGCCACC
GTATTTAGTTAAATGCAACCAGATATGGGATTCCAGGTCCAAAATACAGTTATGGATCTTTCTCC
ACTCACTGAAGCACTACTGTCCCACTCTCAACAGTCCATAGCTAATGAGTGCCCCTCAGAGCAAT
CTCAACACCAGTACCCTACCTCCTAATCCAAGTGTAGACCCACCTAAACTTCCTATTGGCGATTG
CGCAATTCTCCATCCCGTCTGGCCAGCCCATCAACCCCTTTAAGC



Found at i:2010 original size:51 final size:51

Alignment explanation


    Indices: 1948--2045  Score: 151
    Period size: 51  Copynumber: 1.9  Consensus size: 51

       1938 CTTGAAGGGG

                  *                     *   *      *           
       1948 GCACTAGTTCTGAAAAGGCACTAGTTCTGAAGCGGCACTTGTTCTGAGAAA
          1 GCACTAATTCTGAAAAGGCACTAGTTCTAAAGAGGCACTAGTTCTGAGAAA

                          *                                
       1999 GCACTAATTCTGAAGAGGCACTAGTTCTAAAGAGGCACTAGTTCTGA
          1 GCACTAATTCTGAAAAGGCACTAGTTCTAAAGAGGCACTAGTTCTGA

       2046 ATCAATATAC


Statistics
Matches: 42,  Mismatches: 5, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  51   42  1.00

ACGTcount: A:0.31, C:0.19, G:0.24, T:0.26


Consensus pattern (51 bp):   
GCACTAATTCTGAAAAGGCACTAGTTCTAAAGAGGCACTAGTTCTGAGAAA

Left flanking sequence: Indices 1448 -- 1947
GGGATCACAAGCGGAGGATCCACGTACTCGAGCTCGAACCCGTGGGCACGCATCATCTTCTCGAG
CGGAGCACACCGTTTGCGGAGCCGCTCGGCGTTCTGGAGGAACCCTCCCAAGCAGAGCACTTTCA
TGGTGAGTTCAAGGGTCAATGGTGGATTCAATGGTGATTTCGAATTCTACAATGGTGACGGTTAA
CGGTTTCATATGACGTGGGGAAAATGCGGGGTACAGGGTGGGATGAGATCTAGGAAGAGGGGGGA
AGGGAATAGAGGGGGGGTTGTTGGAGGTGGTTCTGGCGGGGTGGTGTGGTTGCGAGGCCATTGAG
GCTCGGAGGTGGTTGTAGGGGTGGTTGTAGGGGTGGTTGCACATGGTACTATCGGAGTTAACGGA
ACGGAGATTCATATGTAAGGAGAACGGAGATATACTGAGAAGTGAGTTTTCATATGAACGGAGAA
CGGAGCATGAATTGTAGGTAAGGCACCAGGCACTACTTGAAGGGG


Right flanking sequence: Indices 2046 -- 2545
ATCAATATACACTACCACTTGTGGCCCGCCTTCAGGGTTAAAAGCCAGCGGGCCAAAGGCACTTT
TGCTAAGCTTCTTGTCGTTAGCCATGGATTCTTACTCAGATCGAATGGTACAAAAAGGGGTACAA
CAGACGGTTATGGGATTAGATGAGAATCCAAAAGTCAGAGACTCTATTCTATGGTGTAACACTAT
CCAGGAGTGTGGTTCATGCAACCAAGGTTTACATCACTGTTACTACCTCGTAGTTGAATGGCCAC
CGTATTTAGTTAAATGCAACCAGATATGGGATTCCAGGTCCAAAATACAGTTATGGATCTTTCTC
CACTCACTGAAGCACTACTGTCCCACTCTCAACAGTCCATAGCTAATGAGTGCCCCTCAGAGCAA
TCTCAACACCAGTACCCTACCTCCTAATCCAAGTGTAGACCCACCTAAACTTCCTATTGGCGATT
GCGCAATTCTCCATCCCGTCTGGCCAGCCCATCAACCCCTTTAAG



Found at i:2978 original size:8 final size:8

Alignment explanation


    Indices: 2961--3004  Score: 63
    Period size: 8  Copynumber: 5.6  Consensus size: 8

       2951 CCACTACTCG

                    
       2961 CCAC-TCA
          1 CCACTTCA

                    
       2968 CCACTTCA
          1 CCACTTCA

                    
       2976 CCACTTCA
          1 CCACTTCA

                 * *
       2984 CCACTACT
          1 CCACTTCA

                    
       2992 CCACTTCA
          1 CCACTTCA

                 
       3000 CCACT
          1 CCACT

       3005 ACTCCACTAC


Statistics
Matches: 32,  Mismatches: 4, Indels: 1
        0.86            0.11        0.03

Matches are distributed among these distances:
   7    4  0.12
   8   28  0.88

ACGTcount: A:0.25, C:0.52, G:0.00, T:0.23


Consensus pattern (8 bp):   
CCACTTCA

Left flanking sequence: Indices 2461 -- 2960
AATCCAAGTGTAGACCCACCTAAACTTCCTATTGGCGATTGCGCAATTCTCCATCCCGTCTGGCC
AGCCCATCAACCCCTTTAAGCTCCGAGCTAAAGACCAAGAAAGCGGTGGGGGGTCTGGGGGGACG
CCGCCTGCGGTCCCCCAGCTGGTGCCTTGTTCTTCGCAGCTTTTCCAAGTGACAATATCCGGTGG
ATTTTAGGAGTATTGATAGCTTTGGAAGTGATGCTCTCTTGCTTCTCTTGCGTCTCTTGCGACTA
GACCATTCTTCTAGAAGACCATCCAATATAGCTTGAATTGAGTTAAAAATTAGAAAGTTAGGGAA
GACTTGGGTGTAGAAATTACACTCGTTTATTCAAGATGAGAATCCAATAAACGGAGACTTTTCTA
TGTATTCAACACTACCTGGTTTACAGTGTACATTTCCGTAACTACCCTTGTCGGTGGCAAGATGC
CACCGTATTTGGTTAAATGCAACCAGGTATGGAAACCACTACTCG


Right flanking sequence: Indices 3005 -- 3504
ACTCCACTACTCTACCTTTTCTCACATTAATACGTTTCTTTAGTATTTCAATCGTCCAACACAAT
CACCTCCAGCTCGGGCCCGGGCACCAGCCGTTTCCGCTCCGAGCTCGTCGTGCTCAGGTTGCGCC
GCTTCTTGGCCGCCACCTGCGGCGTCGCGGGCGTGTGCGTGGGCGTGGCCGCCGCCAACGGGTTG
GCGGGCACCGCCAGCAGCTCCTGGACGGTGGGCGTCTGCACCATCACCGGCTGGTTGGGCCACAC
CGCTCTCATGTGCGCCTGGCGCTGCTGCTCGTACAACAGCCGCTGCCACGCCTCGTAGTGCTGGC
GGCCGGCGGCCTCGTGGGCCTCGCGCACCGCGCGCTCCTGGGCCTCGCGGGCCTCGCGTTCCTTG
GCCTCGTGGGCCTCGCGAACGGCCCGTTCCTTCGCTTCCTGGGCTTCGCGAAGCTCACGCTCGCG
ACGGGCGATCTCCGCGAGGCGGGCGTTCTCCGCGGCCTCCTGGCG



Found at i:2986 original size:16 final size:16

Alignment explanation


    Indices: 2961--3012  Score: 70
    Period size: 16  Copynumber: 3.3  Consensus size: 16

       2951 CCACTACTCG

                         *  
       2961 CCAC-TCACCACTTCA
          1 CCACTTCACCACTACA

                           *
       2976 CCACTTCACCACTACT
          1 CCACTTCACCACTACA

                           *
       2992 CCACTTCACCACTACT
          1 CCACTTCACCACTACA

                 
       3008 CCACT
          1 CCACT

       3013 ACTCTACCTT


Statistics
Matches: 34,  Mismatches: 2, Indels: 1
        0.92            0.05        0.03

Matches are distributed among these distances:
  15    4  0.12
  16   30  0.88

ACGTcount: A:0.25, C:0.52, G:0.00, T:0.23


Consensus pattern (16 bp):   
CCACTTCACCACTACA

Left flanking sequence: Indices 2461 -- 2960
AATCCAAGTGTAGACCCACCTAAACTTCCTATTGGCGATTGCGCAATTCTCCATCCCGTCTGGCC
AGCCCATCAACCCCTTTAAGCTCCGAGCTAAAGACCAAGAAAGCGGTGGGGGGTCTGGGGGGACG
CCGCCTGCGGTCCCCCAGCTGGTGCCTTGTTCTTCGCAGCTTTTCCAAGTGACAATATCCGGTGG
ATTTTAGGAGTATTGATAGCTTTGGAAGTGATGCTCTCTTGCTTCTCTTGCGTCTCTTGCGACTA
GACCATTCTTCTAGAAGACCATCCAATATAGCTTGAATTGAGTTAAAAATTAGAAAGTTAGGGAA
GACTTGGGTGTAGAAATTACACTCGTTTATTCAAGATGAGAATCCAATAAACGGAGACTTTTCTA
TGTATTCAACACTACCTGGTTTACAGTGTACATTTCCGTAACTACCCTTGTCGGTGGCAAGATGC
CACCGTATTTGGTTAAATGCAACCAGGTATGGAAACCACTACTCG


Right flanking sequence: Indices 3013 -- 3512
ACTCTACCTTTTCTCACATTAATACGTTTCTTTAGTATTTCAATCGTCCAACACAATCACCTCCA
GCTCGGGCCCGGGCACCAGCCGTTTCCGCTCCGAGCTCGTCGTGCTCAGGTTGCGCCGCTTCTTG
GCCGCCACCTGCGGCGTCGCGGGCGTGTGCGTGGGCGTGGCCGCCGCCAACGGGTTGGCGGGCAC
CGCCAGCAGCTCCTGGACGGTGGGCGTCTGCACCATCACCGGCTGGTTGGGCCACACCGCTCTCA
TGTGCGCCTGGCGCTGCTGCTCGTACAACAGCCGCTGCCACGCCTCGTAGTGCTGGCGGCCGGCG
GCCTCGTGGGCCTCGCGCACCGCGCGCTCCTGGGCCTCGCGGGCCTCGCGTTCCTTGGCCTCGTG
GGCCTCGCGAACGGCCCGTTCCTTCGCTTCCTGGGCTTCGCGAAGCTCACGCTCGCGACGGGCGA
TCTCCGCGAGGCGGGCGTTCTCCGCGGCCTCCTGGCGGAGCCGCT



Found at i:2997 original size:24 final size:24

Alignment explanation


    Indices: 2968--3016  Score: 80
    Period size: 24  Copynumber: 2.0  Consensus size: 24

       2958 TCGCCACTCA

                         *          
       2968 CCACTTCACCACTTCACCACTACT
          1 CCACTTCACCACTACACCACTACT

                           *        
       2992 CCACTTCACCACTACTCCACTACT
          1 CCACTTCACCACTACACCACTACT

             
       3016 C
          1 C

       3017 TACCTTTTCT


Statistics
Matches: 23,  Mismatches: 2, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
  24   23  1.00

ACGTcount: A:0.24, C:0.51, G:0.00, T:0.24


Consensus pattern (24 bp):   
CCACTTCACCACTACACCACTACT

Left flanking sequence: Indices 2468 -- 2967
GTGTAGACCCACCTAAACTTCCTATTGGCGATTGCGCAATTCTCCATCCCGTCTGGCCAGCCCAT
CAACCCCTTTAAGCTCCGAGCTAAAGACCAAGAAAGCGGTGGGGGGTCTGGGGGGACGCCGCCTG
CGGTCCCCCAGCTGGTGCCTTGTTCTTCGCAGCTTTTCCAAGTGACAATATCCGGTGGATTTTAG
GAGTATTGATAGCTTTGGAAGTGATGCTCTCTTGCTTCTCTTGCGTCTCTTGCGACTAGACCATT
CTTCTAGAAGACCATCCAATATAGCTTGAATTGAGTTAAAAATTAGAAAGTTAGGGAAGACTTGG
GTGTAGAAATTACACTCGTTTATTCAAGATGAGAATCCAATAAACGGAGACTTTTCTATGTATTC
AACACTACCTGGTTTACAGTGTACATTTCCGTAACTACCCTTGTCGGTGGCAAGATGCCACCGTA
TTTGGTTAAATGCAACCAGGTATGGAAACCACTACTCGCCACTCA


Right flanking sequence: Indices 3017 -- 3516
TACCTTTTCTCACATTAATACGTTTCTTTAGTATTTCAATCGTCCAACACAATCACCTCCAGCTC
GGGCCCGGGCACCAGCCGTTTCCGCTCCGAGCTCGTCGTGCTCAGGTTGCGCCGCTTCTTGGCCG
CCACCTGCGGCGTCGCGGGCGTGTGCGTGGGCGTGGCCGCCGCCAACGGGTTGGCGGGCACCGCC
AGCAGCTCCTGGACGGTGGGCGTCTGCACCATCACCGGCTGGTTGGGCCACACCGCTCTCATGTG
CGCCTGGCGCTGCTGCTCGTACAACAGCCGCTGCCACGCCTCGTAGTGCTGGCGGCCGGCGGCCT
CGTGGGCCTCGCGCACCGCGCGCTCCTGGGCCTCGCGGGCCTCGCGTTCCTTGGCCTCGTGGGCC
TCGCGAACGGCCCGTTCCTTCGCTTCCTGGGCTTCGCGAAGCTCACGCTCGCGACGGGCGATCTC
CGCGAGGCGGGCGTTCTCCGCGGCCTCCTGGCGGAGCCGCTCGCG



Found at i:3387 original size:24 final size:24

Alignment explanation


    Indices: 3344--3411  Score: 82
    Period size: 24  Copynumber: 2.8  Consensus size: 24

       3334 GGCGGCCTCG

                       **  *        
       3344 TGGGCCTCGCGCACCGCGCGCTCC
          1 TGGGCCTCGCGGGCCTCGCGCTCC

                                *   
       3368 TGGGCCTCGCGGGCCTCGCGTTCC
          1 TGGGCCTCGCGGGCCTCGCGCTCC

             *       *          
       3392 TTGGCCTCGTGGGCCTCGCG
          1 TGGGCCTCGCGGGCCTCGCG

       3412 AACGGCCCGT


Statistics
Matches: 38,  Mismatches: 6, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
  24   38  1.00

ACGTcount: A:0.01, C:0.43, G:0.37, T:0.19


Consensus pattern (24 bp):   
TGGGCCTCGCGGGCCTCGCGCTCC

Left flanking sequence: Indices 2844 -- 3343
TTTTCTATGTATTCAACACTACCTGGTTTACAGTGTACATTTCCGTAACTACCCTTGTCGGTGGC
AAGATGCCACCGTATTTGGTTAAATGCAACCAGGTATGGAAACCACTACTCGCCACTCACCACTT
CACCACTTCACCACTACTCCACTTCACCACTACTCCACTACTCTACCTTTTCTCACATTAATACG
TTTCTTTAGTATTTCAATCGTCCAACACAATCACCTCCAGCTCGGGCCCGGGCACCAGCCGTTTC
CGCTCCGAGCTCGTCGTGCTCAGGTTGCGCCGCTTCTTGGCCGCCACCTGCGGCGTCGCGGGCGT
GTGCGTGGGCGTGGCCGCCGCCAACGGGTTGGCGGGCACCGCCAGCAGCTCCTGGACGGTGGGCG
TCTGCACCATCACCGGCTGGTTGGGCCACACCGCTCTCATGTGCGCCTGGCGCTGCTGCTCGTAC
AACAGCCGCTGCCACGCCTCGTAGTGCTGGCGGCCGGCGGCCTCG


Right flanking sequence: Indices 3412 -- 3911
AACGGCCCGTTCCTTCGCTTCCTGGGCTTCGCGAAGCTCACGCTCGCGACGGGCGATCTCCGCGA
GGCGGGCGTTCTCCGCGGCCTCCTGGCGGAGCCGCTCGCGGAGCTCGTGCTCGCGCTTCTCCTGC
TGCTTCTTCTCGTGCTCCCGGAGCACCGTCTGCTCGCGGACCCACGGGTTGACCTCCACGCGCGG
CTTCATCGCGTCCACCGCGGGTTTCGTCTGCTTGAGGAGGTCGGTGGCGAAGGGGAAGATCTCCT
TCTTGGCCATGCGTTTGAACTTGACGGTGGCGTTGGGTGACGCGGGCGGTTTCTCGTGGCTCTCA
GGCCCGGGCGTTGCTTTCCCAGGGCTGGGGAGGAGACACAGAGAGCCGGAAGTCCCAGTGGTGGG
GGGGATAGCTCCAGTGGCGGTGGAAGCGATGGAGGCAGAGATAGGTGCTCCAGTGGCGGTGGAAG
CTGTGATAGCTCCAGTGGCTGTGGATCCCGTGATGGCTCCAGAAG



Found at i:3899 original size:27 final size:27

Alignment explanation


    Indices: 3848--3908  Score: 77
    Period size: 27  Copynumber: 2.3  Consensus size: 27

       3838 AGAGATAGGT

                              * *      
       3848 GCTCCAGTGGCGGTGGAAGCTGTGATA
          1 GCTCCAGTGGCGGTGGAACCCGTGATA

                       *     *        *
       3875 GCTCCAGTGGCTGTGGATCCCGTGATG
          1 GCTCCAGTGGCGGTGGAACCCGTGATA

                   
       3902 GCTCCAG
          1 GCTCCAG

       3909 AAGCTGTACT


Statistics
Matches: 29,  Mismatches: 5, Indels: 0
        0.85            0.15        0.00

Matches are distributed among these distances:
  27   29  1.00

ACGTcount: A:0.15, C:0.25, G:0.38, T:0.23


Consensus pattern (27 bp):   
GCTCCAGTGGCGGTGGAACCCGTGATA

Left flanking sequence: Indices 3348 -- 3847
CCTCGCGCACCGCGCGCTCCTGGGCCTCGCGGGCCTCGCGTTCCTTGGCCTCGTGGGCCTCGCGA
ACGGCCCGTTCCTTCGCTTCCTGGGCTTCGCGAAGCTCACGCTCGCGACGGGCGATCTCCGCGAG
GCGGGCGTTCTCCGCGGCCTCCTGGCGGAGCCGCTCGCGGAGCTCGTGCTCGCGCTTCTCCTGCT
GCTTCTTCTCGTGCTCCCGGAGCACCGTCTGCTCGCGGACCCACGGGTTGACCTCCACGCGCGGC
TTCATCGCGTCCACCGCGGGTTTCGTCTGCTTGAGGAGGTCGGTGGCGAAGGGGAAGATCTCCTT
CTTGGCCATGCGTTTGAACTTGACGGTGGCGTTGGGTGACGCGGGCGGTTTCTCGTGGCTCTCAG
GCCCGGGCGTTGCTTTCCCAGGGCTGGGGAGGAGACACAGAGAGCCGGAAGTCCCAGTGGTGGGG
GGGATAGCTCCAGTGGCGGTGGAAGCGATGGAGGCAGAGATAGGT


Right flanking sequence: Indices 3909 -- 4408
AAGCTGTACTTGCGATAGTCTTCGCTCCAGAAGCTTCGCCTTCCGAGCCAGTTCCGGGCTTCTCT
TGTTCCTTTTCCTTCCCCTTTTCCTTCCCCTTCTCCCTCTCCTCATAGTACGAGTAAATCTTAAA
GAAAAGCACCAACAACGTGTCGTCAATCACACTCGTGGGCCCAAACCCGTTATTGAGCTTCTTCA
TCTCGGTTGTCGCCGCCAAGAGCACAAAATAAATCTCCAACTCCGCGGGAATCTCCTTCGTCACG
CTCTCCATCATCACCTTACACTGGGCCGCAAACTGGGCGTGGGTAAGCCGCGAAAGAAACAGCTC
CGCGTACGAAAAGTCCTTGAGCCCGTACCCAAACGCCGCCCGCACCGTCAAGTTGTACAGCTGGC
ACAACGCGTCCCACGCGTGGTACAAGTTGAGCATGATCAGGTTCAGCTTGCGGAGGCGGCCCAAG
AGGAGCATGAGCGACGCCAAGTCGCGCTCCGCCGTAAGGAGCCGG



Found at i:3995 original size:12 final size:12

Alignment explanation


    Indices: 3978--4005  Score: 56
    Period size: 12  Copynumber: 2.3  Consensus size: 12

       3968 TTCTCTTGTT

                        
       3978 CCTTTTCCTTCC
          1 CCTTTTCCTTCC

                        
       3990 CCTTTTCCTTCC
          1 CCTTTTCCTTCC

                
       4002 CCTT
          1 CCTT

       4006 CTCCCTCTCC


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   16  1.00

ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50


Consensus pattern (12 bp):   
CCTTTTCCTTCC

Left flanking sequence: Indices 3478 -- 3977
GCGGGCGTTCTCCGCGGCCTCCTGGCGGAGCCGCTCGCGGAGCTCGTGCTCGCGCTTCTCCTGCT
GCTTCTTCTCGTGCTCCCGGAGCACCGTCTGCTCGCGGACCCACGGGTTGACCTCCACGCGCGGC
TTCATCGCGTCCACCGCGGGTTTCGTCTGCTTGAGGAGGTCGGTGGCGAAGGGGAAGATCTCCTT
CTTGGCCATGCGTTTGAACTTGACGGTGGCGTTGGGTGACGCGGGCGGTTTCTCGTGGCTCTCAG
GCCCGGGCGTTGCTTTCCCAGGGCTGGGGAGGAGACACAGAGAGCCGGAAGTCCCAGTGGTGGGG
GGGATAGCTCCAGTGGCGGTGGAAGCGATGGAGGCAGAGATAGGTGCTCCAGTGGCGGTGGAAGC
TGTGATAGCTCCAGTGGCTGTGGATCCCGTGATGGCTCCAGAAGCTGTACTTGCGATAGTCTTCG
CTCCAGAAGCTTCGCCTTCCGAGCCAGTTCCGGGCTTCTCTTGTT


Right flanking sequence: Indices 4006 -- 4505
CTCCCTCTCCTCATAGTACGAGTAAATCTTAAAGAAAAGCACCAACAACGTGTCGTCAATCACAC
TCGTGGGCCCAAACCCGTTATTGAGCTTCTTCATCTCGGTTGTCGCCGCCAAGAGCACAAAATAA
ATCTCCAACTCCGCGGGAATCTCCTTCGTCACGCTCTCCATCATCACCTTACACTGGGCCGCAAA
CTGGGCGTGGGTAAGCCGCGAAAGAAACAGCTCCGCGTACGAAAAGTCCTTGAGCCCGTACCCAA
ACGCCGCCCGCACCGTCAAGTTGTACAGCTGGCACAACGCGTCCCACGCGTGGTACAAGTTGAGC
ATGATCAGGTTCAGCTTGCGGAGGCGGCCCAAGAGGAGCATGAGCGACGCCAAGTCGCGCTCCGC
CGTAAGGAGCCGGATGTAGAGCATGGCGTACTGCCAGGTGTAGTAGAAGTGCTTGCCCGGGCGCT
CGTTCTCGGGCTTCCAGATGGTGATGAGCTGCTTGCCGGTGGTGC



Found at i:4700 original size:3 final size:3

Alignment explanation


    Indices: 4679--4731  Score: 52
    Period size: 3  Copynumber: 17.7  Consensus size: 3

       4669 GAGGGCGGAG

                  *           *               *   *               *   *    
       4679 GAA GAT GAA GAA GAT GAA GAA GAA GAC GAG GAA GAA GAA GAC GAG GAA
          1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA

                  
       4727 GAA GA
          1 GAA GA

       4732 CGCTACAGTA


Statistics
Matches: 40,  Mismatches: 10, Indels: 0
        0.80            0.20        0.00

Matches are distributed among these distances:
   3   40  1.00

ACGTcount: A:0.55, C:0.04, G:0.38, T:0.04


Consensus pattern (3 bp):   
GAA

Left flanking sequence: Indices 4179 -- 4678
TCACCTTACACTGGGCCGCAAACTGGGCGTGGGTAAGCCGCGAAAGAAACAGCTCCGCGTACGAA
AAGTCCTTGAGCCCGTACCCAAACGCCGCCCGCACCGTCAAGTTGTACAGCTGGCACAACGCGTC
CCACGCGTGGTACAAGTTGAGCATGATCAGGTTCAGCTTGCGGAGGCGGCCCAAGAGGAGCATGA
GCGACGCCAAGTCGCGCTCCGCCGTAAGGAGCCGGATGTAGAGCATGGCGTACTGCCAGGTGTAG
TAGAAGTGCTTGCCCGGGCGCTCGTTCTCGGGCTTCCAGATGGTGATGAGCTGCTTGCCGGTGGT
GCGGAGGAACACGAGCGTGTTCATGAGGGCGAGGGCGCCCTTGGCGTCGCCAAACTCGTCGAAGA
GGATCTGCGCGAGGCGGAAGCGCGGCTTGTGGTGCCACAGGCGCTTGTCGTAGCGGTCGACGAGG
CGGAGGGCGGCGCACACGATGCGGTAGAAGCGAGTGAGGGCGGAG


Right flanking sequence: Indices 4732 -- 5231
CGCTACAGTAGCAGAGACTTCTGAGGTCTTGGAAGGTTCAGAAGGATTGGAGGGTTTTGAAGGGT
TGGAAGGTTCTGAAGGGTTGGAGGGTTCTGAAGGATTGGAAGGTTCTGAGGGTTTAGAGACAGTT
TCCGAAGGGTTGGAGGCAGTCTCGGCCTGTGACGGGTTCGCCAGAGCTTCAGCACCCTTTTCACC
AGTCTGAGAAGCATTCTCGCCAGCAGAAGCATTATCGCCGGTCTGAGAAGCATTTTCGCCAGTCT
GAGAGGCATTCTCACCAGCATTCTCGCCAGCCTTCTCGCCAGCATTCTCACCAGCCTTCTCAGCT
TCCACATCAACCATTTCTGTATCTTCCTCAGGCTCAATAGCCTTCTCTTGGCCTTCTTCAGTCCC
CACATTCTTCTCCTTCTCTTGCTCAGTCCCCTCTTTCTCGTCCTTCTTCTCCTTCTCTCCATCCC
CCTCCTTCTCTCCATCAATCTCCCTTATCGCCTCGTCCAAGCCCT



Found at i:4703 original size:15 final size:15

Alignment explanation


    Indices: 4676--4731  Score: 85
    Period size: 15  Copynumber: 3.7  Consensus size: 15

       4666 AGTGAGGGCG

                    *     *
       4676 GAGGAAGATGAAGAA
          1 GAGGAAGAAGAAGAC

              *            
       4691 GATGAAGAAGAAGAC
          1 GAGGAAGAAGAAGAC

                           
       4706 GAGGAAGAAGAAGAC
          1 GAGGAAGAAGAAGAC

                       
       4721 GAGGAAGAAGA
          1 GAGGAAGAAGA

       4732 CGCTACAGTA


Statistics
Matches: 37,  Mismatches: 4, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  15   37  1.00

ACGTcount: A:0.54, C:0.04, G:0.39, T:0.04


Consensus pattern (15 bp):   
GAGGAAGAAGAAGAC

Left flanking sequence: Indices 4176 -- 4675
TCATCACCTTACACTGGGCCGCAAACTGGGCGTGGGTAAGCCGCGAAAGAAACAGCTCCGCGTAC
GAAAAGTCCTTGAGCCCGTACCCAAACGCCGCCCGCACCGTCAAGTTGTACAGCTGGCACAACGC
GTCCCACGCGTGGTACAAGTTGAGCATGATCAGGTTCAGCTTGCGGAGGCGGCCCAAGAGGAGCA
TGAGCGACGCCAAGTCGCGCTCCGCCGTAAGGAGCCGGATGTAGAGCATGGCGTACTGCCAGGTG
TAGTAGAAGTGCTTGCCCGGGCGCTCGTTCTCGGGCTTCCAGATGGTGATGAGCTGCTTGCCGGT
GGTGCGGAGGAACACGAGCGTGTTCATGAGGGCGAGGGCGCCCTTGGCGTCGCCAAACTCGTCGA
AGAGGATCTGCGCGAGGCGGAAGCGCGGCTTGTGGTGCCACAGGCGCTTGTCGTAGCGGTCGACG
AGGCGGAGGGCGGCGCACACGATGCGGTAGAAGCGAGTGAGGGCG


Right flanking sequence: Indices 4732 -- 5231
CGCTACAGTAGCAGAGACTTCTGAGGTCTTGGAAGGTTCAGAAGGATTGGAGGGTTTTGAAGGGT
TGGAAGGTTCTGAAGGGTTGGAGGGTTCTGAAGGATTGGAAGGTTCTGAGGGTTTAGAGACAGTT
TCCGAAGGGTTGGAGGCAGTCTCGGCCTGTGACGGGTTCGCCAGAGCTTCAGCACCCTTTTCACC
AGTCTGAGAAGCATTCTCGCCAGCAGAAGCATTATCGCCGGTCTGAGAAGCATTTTCGCCAGTCT
GAGAGGCATTCTCACCAGCATTCTCGCCAGCCTTCTCGCCAGCATTCTCACCAGCCTTCTCAGCT
TCCACATCAACCATTTCTGTATCTTCCTCAGGCTCAATAGCCTTCTCTTGGCCTTCTTCAGTCCC
CACATTCTTCTCCTTCTCTTGCTCAGTCCCCTCTTTCTCGTCCTTCTTCTCCTTCTCTCCATCCC
CCTCCTTCTCTCCATCAATCTCCCTTATCGCCTCGTCCAAGCCCT



Found at i:4787 original size:18 final size:18

Alignment explanation


    Indices: 4760--4845  Score: 118
    Period size: 18  Copynumber: 4.8  Consensus size: 18

       4750 TTCTGAGGTC

                       *      
       4760 TTGGAAGGTTCAGAAGGA
          1 TTGGAAGGTTCTGAAGGA

                 *    *      *
       4778 TTGGAGGGTTTTGAAGGG
          1 TTGGAAGGTTCTGAAGGA

                             *
       4796 TTGGAAGGTTCTGAAGGG
          1 TTGGAAGGTTCTGAAGGA

                 *            
       4814 TTGGAGGGTTCTGAAGGA
          1 TTGGAAGGTTCTGAAGGA

                          
       4832 TTGGAAGGTTCTGA
          1 TTGGAAGGTTCTGA

       4846 GGGTTTAGAG


Statistics
Matches: 59,  Mismatches: 9, Indels: 0
        0.87            0.13        0.00

Matches are distributed among these distances:
  18   59  1.00

ACGTcount: A:0.23, C:0.05, G:0.43, T:0.29


Consensus pattern (18 bp):   
TTGGAAGGTTCTGAAGGA

Left flanking sequence: Indices 4260 -- 4759
ACCCAAACGCCGCCCGCACCGTCAAGTTGTACAGCTGGCACAACGCGTCCCACGCGTGGTACAAG
TTGAGCATGATCAGGTTCAGCTTGCGGAGGCGGCCCAAGAGGAGCATGAGCGACGCCAAGTCGCG
CTCCGCCGTAAGGAGCCGGATGTAGAGCATGGCGTACTGCCAGGTGTAGTAGAAGTGCTTGCCCG
GGCGCTCGTTCTCGGGCTTCCAGATGGTGATGAGCTGCTTGCCGGTGGTGCGGAGGAACACGAGC
GTGTTCATGAGGGCGAGGGCGCCCTTGGCGTCGCCAAACTCGTCGAAGAGGATCTGCGCGAGGCG
GAAGCGCGGCTTGTGGTGCCACAGGCGCTTGTCGTAGCGGTCGACGAGGCGGAGGGCGGCGCACA
CGATGCGGTAGAAGCGAGTGAGGGCGGAGGAAGATGAAGAAGATGAAGAAGAAGACGAGGAAGAA
GAAGACGAGGAAGAAGACGCTACAGTAGCAGAGACTTCTGAGGTC


Right flanking sequence: Indices 4846 -- 5345
GGGTTTAGAGACAGTTTCCGAAGGGTTGGAGGCAGTCTCGGCCTGTGACGGGTTCGCCAGAGCTT
CAGCACCCTTTTCACCAGTCTGAGAAGCATTCTCGCCAGCAGAAGCATTATCGCCGGTCTGAGAA
GCATTTTCGCCAGTCTGAGAGGCATTCTCACCAGCATTCTCGCCAGCCTTCTCGCCAGCATTCTC
ACCAGCCTTCTCAGCTTCCACATCAACCATTTCTGTATCTTCCTCAGGCTCAATAGCCTTCTCTT
GGCCTTCTTCAGTCCCCACATTCTTCTCCTTCTCTTGCTCAGTCCCCTCTTTCTCGTCCTTCTTC
TCCTTCTCTCCATCCCCCTCCTTCTCTCCATCAATCTCCCTTATCGCCTCGTCCAAGCCCTCGCC
AATCACCGGGTCCCCCCGAAGATACTCCACGGCCTCCTCCCACCCCATCTCGCCCAGCTTCACGT
ACTTGTACACCATCAGCACCAACGTATAATGAGGCTCAATGATCC



Found at i:4843 original size:36 final size:36

Alignment explanation


    Indices: 4760--4850  Score: 139
    Period size: 36  Copynumber: 2.6  Consensus size: 36

       4750 TTCTGAGGTC

                       *     *          *      *
       4760 TTGGAAGGTTCAGAAGGATTGGAGGGTTTTGAAGGG
          1 TTGGAAGGTTCTGAAGGGTTGGAGGGTTCTGAAGGA

                                                
       4796 TTGGAAGGTTCTGAAGGGTTGGAGGGTTCTGAAGGA
          1 TTGGAAGGTTCTGAAGGGTTGGAGGGTTCTGAAGGA

                                
       4832 TTGGAAGGTTCTG-AGGGTT
          1 TTGGAAGGTTCTGAAGGGTT

       4851 TAGAGACAGT


Statistics
Matches: 51,  Mismatches: 4, Indels: 1
        0.91            0.07        0.02

Matches are distributed among these distances:
  35    6  0.12
  36   45  0.88

ACGTcount: A:0.22, C:0.04, G:0.44, T:0.30


Consensus pattern (36 bp):   
TTGGAAGGTTCTGAAGGGTTGGAGGGTTCTGAAGGA

Left flanking sequence: Indices 4260 -- 4759
ACCCAAACGCCGCCCGCACCGTCAAGTTGTACAGCTGGCACAACGCGTCCCACGCGTGGTACAAG
TTGAGCATGATCAGGTTCAGCTTGCGGAGGCGGCCCAAGAGGAGCATGAGCGACGCCAAGTCGCG
CTCCGCCGTAAGGAGCCGGATGTAGAGCATGGCGTACTGCCAGGTGTAGTAGAAGTGCTTGCCCG
GGCGCTCGTTCTCGGGCTTCCAGATGGTGATGAGCTGCTTGCCGGTGGTGCGGAGGAACACGAGC
GTGTTCATGAGGGCGAGGGCGCCCTTGGCGTCGCCAAACTCGTCGAAGAGGATCTGCGCGAGGCG
GAAGCGCGGCTTGTGGTGCCACAGGCGCTTGTCGTAGCGGTCGACGAGGCGGAGGGCGGCGCACA
CGATGCGGTAGAAGCGAGTGAGGGCGGAGGAAGATGAAGAAGATGAAGAAGAAGACGAGGAAGAA
GAAGACGAGGAAGAAGACGCTACAGTAGCAGAGACTTCTGAGGTC


Right flanking sequence: Indices 4851 -- 5350
TAGAGACAGTTTCCGAAGGGTTGGAGGCAGTCTCGGCCTGTGACGGGTTCGCCAGAGCTTCAGCA
CCCTTTTCACCAGTCTGAGAAGCATTCTCGCCAGCAGAAGCATTATCGCCGGTCTGAGAAGCATT
TTCGCCAGTCTGAGAGGCATTCTCACCAGCATTCTCGCCAGCCTTCTCGCCAGCATTCTCACCAG
CCTTCTCAGCTTCCACATCAACCATTTCTGTATCTTCCTCAGGCTCAATAGCCTTCTCTTGGCCT
TCTTCAGTCCCCACATTCTTCTCCTTCTCTTGCTCAGTCCCCTCTTTCTCGTCCTTCTTCTCCTT
CTCTCCATCCCCCTCCTTCTCTCCATCAATCTCCCTTATCGCCTCGTCCAAGCCCTCGCCAATCA
CCGGGTCCCCCCGAAGATACTCCACGGCCTCCTCCCACCCCATCTCGCCCAGCTTCACGTACTTG
TACACCATCAGCACCAACGTATAATGAGGCTCAATGATCCGGTCC



Found at i:4949 original size:21 final size:21

Alignment explanation


    Indices: 4925--5009  Score: 104
    Period size: 21  Copynumber: 4.2  Consensus size: 21

       4915 ACCCTTTTCA

                                 
       4925 CCAGTCTGAGAAGCATTCTCG
          1 CCAGTCTGAGAAGCATTCTCG

                             *   
       4946 CCAG-C--AGAAGCATTATCG
          1 CCAGTCTGAGAAGCATTCTCG

              *              *   
       4964 CCGGTCTGAGAAGCATTTTCG
          1 CCAGTCTGAGAAGCATTCTCG

                       *        *
       4985 CCAGTCTGAGAGGCATTCTCA
          1 CCAGTCTGAGAAGCATTCTCG

                
       5006 CCAG
          1 CCAG

       5010 CATTCTCGCC


Statistics
Matches: 54,  Mismatches: 7, Indels: 6
        0.81            0.10        0.09

Matches are distributed among these distances:
  18   15  0.28
  19    1  0.02
  20    1  0.02
  21   37  0.69

ACGTcount: A:0.25, C:0.28, G:0.25, T:0.22


Consensus pattern (21 bp):   
CCAGTCTGAGAAGCATTCTCG

Left flanking sequence: Indices 4425 -- 4924
ACTGCCAGGTGTAGTAGAAGTGCTTGCCCGGGCGCTCGTTCTCGGGCTTCCAGATGGTGATGAGC
TGCTTGCCGGTGGTGCGGAGGAACACGAGCGTGTTCATGAGGGCGAGGGCGCCCTTGGCGTCGCC
AAACTCGTCGAAGAGGATCTGCGCGAGGCGGAAGCGCGGCTTGTGGTGCCACAGGCGCTTGTCGT
AGCGGTCGACGAGGCGGAGGGCGGCGCACACGATGCGGTAGAAGCGAGTGAGGGCGGAGGAAGAT
GAAGAAGATGAAGAAGAAGACGAGGAAGAAGAAGACGAGGAAGAAGACGCTACAGTAGCAGAGAC
TTCTGAGGTCTTGGAAGGTTCAGAAGGATTGGAGGGTTTTGAAGGGTTGGAAGGTTCTGAAGGGT
TGGAGGGTTCTGAAGGATTGGAAGGTTCTGAGGGTTTAGAGACAGTTTCCGAAGGGTTGGAGGCA
GTCTCGGCCTGTGACGGGTTCGCCAGAGCTTCAGCACCCTTTTCA


Right flanking sequence: Indices 5010 -- 5509
CATTCTCGCCAGCCTTCTCGCCAGCATTCTCACCAGCCTTCTCAGCTTCCACATCAACCATTTCT
GTATCTTCCTCAGGCTCAATAGCCTTCTCTTGGCCTTCTTCAGTCCCCACATTCTTCTCCTTCTC
TTGCTCAGTCCCCTCTTTCTCGTCCTTCTTCTCCTTCTCTCCATCCCCCTCCTTCTCTCCATCAA
TCTCCCTTATCGCCTCGTCCAAGCCCTCGCCAATCACCGGGTCCCCCCGAAGATACTCCACGGCC
TCCTCCCACCCCATCTCGCCCAGCTTCACGTACTTGTACACCATCAGCACCAACGTATAATGAGG
CTCAATGATCCGGTCCCCCTGGGCACTGTCCTCGTACGCGATCGCCGCCGCCTGCGCCATCACCG
CAAGCACCTCGCGCCAGGGCTTCCCCCGCTTCCGCTCCACCTTCGCAAGATAGTAATAATTACAC
CAGTCGTCGTCGTCTGCCTTGAGCGCCACACAGAGCCCCTGGTGC



Found at i:5014 original size:12 final size:12

Alignment explanation


    Indices: 4997--5053  Score: 78
    Period size: 12  Copynumber: 4.8  Consensus size: 12

       4987 AGTCTGAGAG

                        
       4997 GCATTCTCACCA
          1 GCATTCTCACCA

                    *   
       5009 GCATTCTCGCCA
          1 GCATTCTCACCA

              *     *   
       5021 GCCTTCTCGCCA
          1 GCATTCTCACCA

                        
       5033 GCATTCTCACCA
          1 GCATTCTCACCA

              *      
       5045 GCCTTCTCA
          1 GCATTCTCA

       5054 GCTTCCACAT


Statistics
Matches: 40,  Mismatches: 5, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  12   40  1.00

ACGTcount: A:0.18, C:0.44, G:0.12, T:0.26


Consensus pattern (12 bp):   
GCATTCTCACCA

Left flanking sequence: Indices 4497 -- 4996
CGGTGGTGCGGAGGAACACGAGCGTGTTCATGAGGGCGAGGGCGCCCTTGGCGTCGCCAAACTCG
TCGAAGAGGATCTGCGCGAGGCGGAAGCGCGGCTTGTGGTGCCACAGGCGCTTGTCGTAGCGGTC
GACGAGGCGGAGGGCGGCGCACACGATGCGGTAGAAGCGAGTGAGGGCGGAGGAAGATGAAGAAG
ATGAAGAAGAAGACGAGGAAGAAGAAGACGAGGAAGAAGACGCTACAGTAGCAGAGACTTCTGAG
GTCTTGGAAGGTTCAGAAGGATTGGAGGGTTTTGAAGGGTTGGAAGGTTCTGAAGGGTTGGAGGG
TTCTGAAGGATTGGAAGGTTCTGAGGGTTTAGAGACAGTTTCCGAAGGGTTGGAGGCAGTCTCGG
CCTGTGACGGGTTCGCCAGAGCTTCAGCACCCTTTTCACCAGTCTGAGAAGCATTCTCGCCAGCA
GAAGCATTATCGCCGGTCTGAGAAGCATTTTCGCCAGTCTGAGAG


Right flanking sequence: Indices 5054 -- 5553
GCTTCCACATCAACCATTTCTGTATCTTCCTCAGGCTCAATAGCCTTCTCTTGGCCTTCTTCAGT
CCCCACATTCTTCTCCTTCTCTTGCTCAGTCCCCTCTTTCTCGTCCTTCTTCTCCTTCTCTCCAT
CCCCCTCCTTCTCTCCATCAATCTCCCTTATCGCCTCGTCCAAGCCCTCGCCAATCACCGGGTCC
CCCCGAAGATACTCCACGGCCTCCTCCCACCCCATCTCGCCCAGCTTCACGTACTTGTACACCAT
CAGCACCAACGTATAATGAGGCTCAATGATCCGGTCCCCCTGGGCACTGTCCTCGTACGCGATCG
CCGCCGCCTGCGCCATCACCGCAAGCACCTCGCGCCAGGGCTTCCCCCGCTTCCGCTCCACCTTC
GCAAGATAGTAATAATTACACCAGTCGTCGTCGTCTGCCTTGAGCGCCACACAGAGCCCCTGGTG
CACCACCCGCAAGAACAACCGCTTCGGAGCCAGCCAGCGGTCGCA



Found at i:5027 original size:24 final size:24

Alignment explanation


    Indices: 5000--5053  Score: 90
    Period size: 24  Copynumber: 2.2  Consensus size: 24

       4990 CTGAGAGGCA

                             *      
       5000 TTCTCACCAGCATTCTCGCCAGCC
          1 TTCTCACCAGCATTCTCACCAGCC

                 *                  
       5024 TTCTCGCCAGCATTCTCACCAGCC
          1 TTCTCACCAGCATTCTCACCAGCC

                  
       5048 TTCTCA
          1 TTCTCA

       5054 GCTTCCACAT


Statistics
Matches: 27,  Mismatches: 3, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  24   27  1.00

ACGTcount: A:0.17, C:0.44, G:0.11, T:0.28


Consensus pattern (24 bp):   
TTCTCACCAGCATTCTCACCAGCC

Left flanking sequence: Indices 4500 -- 4999
TGGTGCGGAGGAACACGAGCGTGTTCATGAGGGCGAGGGCGCCCTTGGCGTCGCCAAACTCGTCG
AAGAGGATCTGCGCGAGGCGGAAGCGCGGCTTGTGGTGCCACAGGCGCTTGTCGTAGCGGTCGAC
GAGGCGGAGGGCGGCGCACACGATGCGGTAGAAGCGAGTGAGGGCGGAGGAAGATGAAGAAGATG
AAGAAGAAGACGAGGAAGAAGAAGACGAGGAAGAAGACGCTACAGTAGCAGAGACTTCTGAGGTC
TTGGAAGGTTCAGAAGGATTGGAGGGTTTTGAAGGGTTGGAAGGTTCTGAAGGGTTGGAGGGTTC
TGAAGGATTGGAAGGTTCTGAGGGTTTAGAGACAGTTTCCGAAGGGTTGGAGGCAGTCTCGGCCT
GTGACGGGTTCGCCAGAGCTTCAGCACCCTTTTCACCAGTCTGAGAAGCATTCTCGCCAGCAGAA
GCATTATCGCCGGTCTGAGAAGCATTTTCGCCAGTCTGAGAGGCA


Right flanking sequence: Indices 5054 -- 5553
GCTTCCACATCAACCATTTCTGTATCTTCCTCAGGCTCAATAGCCTTCTCTTGGCCTTCTTCAGT
CCCCACATTCTTCTCCTTCTCTTGCTCAGTCCCCTCTTTCTCGTCCTTCTTCTCCTTCTCTCCAT
CCCCCTCCTTCTCTCCATCAATCTCCCTTATCGCCTCGTCCAAGCCCTCGCCAATCACCGGGTCC
CCCCGAAGATACTCCACGGCCTCCTCCCACCCCATCTCGCCCAGCTTCACGTACTTGTACACCAT
CAGCACCAACGTATAATGAGGCTCAATGATCCGGTCCCCCTGGGCACTGTCCTCGTACGCGATCG
CCGCCGCCTGCGCCATCACCGCAAGCACCTCGCGCCAGGGCTTCCCCCGCTTCCGCTCCACCTTC
GCAAGATAGTAATAATTACACCAGTCGTCGTCGTCTGCCTTGAGCGCCACACAGAGCCCCTGGTG
CACCACCCGCAAGAACAACCGCTTCGGAGCCAGCCAGCGGTCGCA



Found at i:5209 original size:18 final size:18

Alignment explanation


    Indices: 5169--5209  Score: 55
    Period size: 18  Copynumber: 2.3  Consensus size: 18

       5159 TCGTCCTTCT

                            **
       5169 TCTCCTTCTCTCCATCCC
          1 TCTCCTTCTCTCCATCAA

            *                 
       5187 CCTCCTTCTCTCCATCAA
          1 TCTCCTTCTCTCCATCAA

                 
       5205 TCTCC
          1 TCTCC

       5210 CTTATCGCCT


Statistics
Matches: 19,  Mismatches: 4, Indels: 0
        0.83            0.17        0.00

Matches are distributed among these distances:
  18   19  1.00

ACGTcount: A:0.10, C:0.54, G:0.00, T:0.37


Consensus pattern (18 bp):   
TCTCCTTCTCTCCATCAA

Left flanking sequence: Indices 4669 -- 5168
GAGGGCGGAGGAAGATGAAGAAGATGAAGAAGAAGACGAGGAAGAAGAAGACGAGGAAGAAGACG
CTACAGTAGCAGAGACTTCTGAGGTCTTGGAAGGTTCAGAAGGATTGGAGGGTTTTGAAGGGTTG
GAAGGTTCTGAAGGGTTGGAGGGTTCTGAAGGATTGGAAGGTTCTGAGGGTTTAGAGACAGTTTC
CGAAGGGTTGGAGGCAGTCTCGGCCTGTGACGGGTTCGCCAGAGCTTCAGCACCCTTTTCACCAG
TCTGAGAAGCATTCTCGCCAGCAGAAGCATTATCGCCGGTCTGAGAAGCATTTTCGCCAGTCTGA
GAGGCATTCTCACCAGCATTCTCGCCAGCCTTCTCGCCAGCATTCTCACCAGCCTTCTCAGCTTC
CACATCAACCATTTCTGTATCTTCCTCAGGCTCAATAGCCTTCTCTTGGCCTTCTTCAGTCCCCA
CATTCTTCTCCTTCTCTTGCTCAGTCCCCTCTTTCTCGTCCTTCT


Right flanking sequence: Indices 5210 -- 5709
CTTATCGCCTCGTCCAAGCCCTCGCCAATCACCGGGTCCCCCCGAAGATACTCCACGGCCTCCTC
CCACCCCATCTCGCCCAGCTTCACGTACTTGTACACCATCAGCACCAACGTATAATGAGGCTCAA
TGATCCGGTCCCCCTGGGCACTGTCCTCGTACGCGATCGCCGCCGCCTGCGCCATCACCGCAAGC
ACCTCGCGCCAGGGCTTCCCCCGCTTCCGCTCCACCTTCGCAAGATAGTAATAATTACACCAGTC
GTCGTCGTCTGCCTTGAGCGCCACACAGAGCCCCTGGTGCACCACCCGCAAGAACAACCGCTTCG
GAGCCAGCCAGCGGTCGCAAACACTCTCAAACTGCGCCACCCCGGCCCGCCGCACAAACGCCGGC
CGGTCCACCACCCGGAACGCGTACCCGTCCATGGGCACCATCACCGCCTGGTACACCTCGCGCGA
GAGACACGTCATGAGCTGGCCCACCACCTCGTCGAGCCCGGGCGA



Found at i:6621 original size:12 final size:12

Alignment explanation


    Indices: 6606--6633  Score: 56
    Period size: 12  Copynumber: 2.3  Consensus size: 12

       6596 GTTTTGCTCT

                        
       6606 GGTTATTGGCCA
          1 GGTTATTGGCCA

                        
       6618 GGTTATTGGCCA
          1 GGTTATTGGCCA

                
       6630 GGTT
          1 GGTT

       6634 TTCACTCTGG


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   16  1.00

ACGTcount: A:0.14, C:0.14, G:0.36, T:0.36


Consensus pattern (12 bp):   
GGTTATTGGCCA

Left flanking sequence: Indices 6106 -- 6605
GGTGATCCGCGTGGTGTCCATGAACTGCTCGAGCACCGCGTGGTTGCGTGCGAGCGCGGACGCGT
GCGGGCCCGTCTCGAAGTTCGGGTCGCCCACCACCTGGTAGAAGTCGTCGATGATCAGGCGGGTG
TCGTGCTTGGGCGGGTGCACGAGGGTGTTGCGACGGAAGCACTGCGGGAGGATGAACGGGGCGAG
CTCCAACGTGGTGGTGCGGTCTAGGGCCCGCGGAGTGGTGCTGGCACTGGCCCGAACGTGCTGCT
TTGGGGCAAACCCGTCGATGGCGAGCGCGTAGCGGTGGCGGCAGAAGATGAGCTGGCACACCTCG
GCCGTGTCTGCGCCAAAGACCCGCTCCTGGCACACCTCGAGGAAGATTCCGCCGGCGTCCGCGCA
GAGCTGGCGGGTGCCCAAGTGCGCGTGCATGGTCAGACAGAAGGCGATGCCATCACCCGAATTTT
TGTTTGGGTTGGGGTTGTTTGGGTTGTTGCCAGGGGTTTTGCTCT


Right flanking sequence: Indices 6634 -- 7133
TTCACTCTGGTTTTTAACCAGGTTGACCAGGTTTTCGCCCGGATTTTTACCCAGTTTGGCCAGGT
CTTCTTCCAGGTTGGCCAGGTTTTCGCCTGTTTCGCCCGGTTTGTTGCCCGTGTTGCCCGTGTTG
CCCGTGTTGCCCGCATTATTTCCCTTGCCGTCGTAGTACACCACGAGCGCCGTGGCCACCCGCAC
CAACGTGTCCTTCAAGCTCTGGAAGCTCGCCTTCAGCCGCGGCTCCACCGACCGCTTGAGGCTGG
TGAGCATCAGCGCCTCCTCGTGGAGCGAGAACACGTACACGAGCTCAAAGAGCCACAACAACCGC
CCGAACGTGGCCGGGTCTGCCTCCGCGGGGAGCTGCCACTTCCTGGGCGCCAAGTACGTGCCCAA
AAACGCCTCGAGAAGCGTGCCTACGAAGCCCACCACCTTGACGACCACCGCCGGGTCGTCCAGCG
CCACGTACTCGCGGATGGCGCCCACAAACCCCTCGAAGCCGCGCT



Found at i:6681 original size:33 final size:33

Alignment explanation


    Indices: 6627--6698  Score: 83
    Period size: 33  Copynumber: 2.2  Consensus size: 33

       6617 AGGTTATTGG

                          *                  
       6627 CCAGGTTTTCACTCTGGTTTTTAACCAGGTTGA
          1 CCAGGTTTTCACTCCGGTTTTTAACCAGGTTGA

                      *             *    *   *
       6660 CCAGGTTTTCGC-CCGGATTTTTACCCAGTTTGG
          1 CCAGGTTTTCACTCCGG-TTTTTAACCAGGTTGA

                  
       6693 CCAGGT
          1 CCAGGT

       6699 CTTCTTCCAG


Statistics
Matches: 33,  Mismatches: 5, Indels: 2
        0.82            0.12        0.05

Matches are distributed among these distances:
  32    3  0.09
  33   30  0.91

ACGTcount: A:0.15, C:0.25, G:0.24, T:0.36


Consensus pattern (33 bp):   
CCAGGTTTTCACTCCGGTTTTTAACCAGGTTGA

Left flanking sequence: Indices 6127 -- 6626
GAACTGCTCGAGCACCGCGTGGTTGCGTGCGAGCGCGGACGCGTGCGGGCCCGTCTCGAAGTTCG
GGTCGCCCACCACCTGGTAGAAGTCGTCGATGATCAGGCGGGTGTCGTGCTTGGGCGGGTGCACG
AGGGTGTTGCGACGGAAGCACTGCGGGAGGATGAACGGGGCGAGCTCCAACGTGGTGGTGCGGTC
TAGGGCCCGCGGAGTGGTGCTGGCACTGGCCCGAACGTGCTGCTTTGGGGCAAACCCGTCGATGG
CGAGCGCGTAGCGGTGGCGGCAGAAGATGAGCTGGCACACCTCGGCCGTGTCTGCGCCAAAGACC
CGCTCCTGGCACACCTCGAGGAAGATTCCGCCGGCGTCCGCGCAGAGCTGGCGGGTGCCCAAGTG
CGCGTGCATGGTCAGACAGAAGGCGATGCCATCACCCGAATTTTTGTTTGGGTTGGGGTTGTTTG
GGTTGTTGCCAGGGGTTTTGCTCTGGTTATTGGCCAGGTTATTGG


Right flanking sequence: Indices 6699 -- 7198
CTTCTTCCAGGTTGGCCAGGTTTTCGCCTGTTTCGCCCGGTTTGTTGCCCGTGTTGCCCGTGTTG
CCCGTGTTGCCCGCATTATTTCCCTTGCCGTCGTAGTACACCACGAGCGCCGTGGCCACCCGCAC
CAACGTGTCCTTCAAGCTCTGGAAGCTCGCCTTCAGCCGCGGCTCCACCGACCGCTTGAGGCTGG
TGAGCATCAGCGCCTCCTCGTGGAGCGAGAACACGTACACGAGCTCAAAGAGCCACAACAACCGC
CCGAACGTGGCCGGGTCTGCCTCCGCGGGGAGCTGCCACTTCCTGGGCGCCAAGTACGTGCCCAA
AAACGCCTCGAGAAGCGTGCCTACGAAGCCCACCACCTTGACGACCACCGCCGGGTCGTCCAGCG
CCACGTACTCGCGGATGGCGCCCACAAACCCCTCGAAGCCGCGCTGGAACTGCGCCAGGTCCTGC
GCCTGGTAGTGGGAGAACAAAATGCCCCAGAGCAGGAGCTTCATC



Found at i:6753 original size:9 final size:9

Alignment explanation


    Indices: 6741--6776  Score: 72
    Period size: 9  Copynumber: 4.0  Consensus size: 9

       6731 TCGCCCGGTT

                     
       6741 TGTTGCCCG
          1 TGTTGCCCG

                     
       6750 TGTTGCCCG
          1 TGTTGCCCG

                     
       6759 TGTTGCCCG
          1 TGTTGCCCG

                     
       6768 TGTTGCCCG
          1 TGTTGCCCG

       6777 CATTATTTCC


Statistics
Matches: 27,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   9   27  1.00

ACGTcount: A:0.00, C:0.33, G:0.33, T:0.33


Consensus pattern (9 bp):   
TGTTGCCCG

Left flanking sequence: Indices 6241 -- 6740
CTTGGGCGGGTGCACGAGGGTGTTGCGACGGAAGCACTGCGGGAGGATGAACGGGGCGAGCTCCA
ACGTGGTGGTGCGGTCTAGGGCCCGCGGAGTGGTGCTGGCACTGGCCCGAACGTGCTGCTTTGGG
GCAAACCCGTCGATGGCGAGCGCGTAGCGGTGGCGGCAGAAGATGAGCTGGCACACCTCGGCCGT
GTCTGCGCCAAAGACCCGCTCCTGGCACACCTCGAGGAAGATTCCGCCGGCGTCCGCGCAGAGCT
GGCGGGTGCCCAAGTGCGCGTGCATGGTCAGACAGAAGGCGATGCCATCACCCGAATTTTTGTTT
GGGTTGGGGTTGTTTGGGTTGTTGCCAGGGGTTTTGCTCTGGTTATTGGCCAGGTTATTGGCCAG
GTTTTCACTCTGGTTTTTAACCAGGTTGACCAGGTTTTCGCCCGGATTTTTACCCAGTTTGGCCA
GGTCTTCTTCCAGGTTGGCCAGGTTTTCGCCTGTTTCGCCCGGTT


Right flanking sequence: Indices 6777 -- 7276
CATTATTTCCCTTGCCGTCGTAGTACACCACGAGCGCCGTGGCCACCCGCACCAACGTGTCCTTC
AAGCTCTGGAAGCTCGCCTTCAGCCGCGGCTCCACCGACCGCTTGAGGCTGGTGAGCATCAGCGC
CTCCTCGTGGAGCGAGAACACGTACACGAGCTCAAAGAGCCACAACAACCGCCCGAACGTGGCCG
GGTCTGCCTCCGCGGGGAGCTGCCACTTCCTGGGCGCCAAGTACGTGCCCAAAAACGCCTCGAGA
AGCGTGCCTACGAAGCCCACCACCTTGACGACCACCGCCGGGTCGTCCAGCGCCACGTACTCGCG
GATGGCGCCCACAAACCCCTCGAAGCCGCGCTGGAACTGCGCCAGGTCCTGCGCCTGGTAGTGGG
AGAACAAAATGCCCCAGAGCAGGAGCTTCATCTCCACCGGCAGCGCCGCGAGGAACCGCTTGATG
GCGTCCACCGTGGGCAGCGCTGCGTCCTGGGGCGCCAAGATCTCC



Found at i:7556 original size:21 final size:21

Alignment explanation


    Indices: 7527--7569  Score: 59
    Period size: 21  Copynumber: 2.0  Consensus size: 21

       7517 CAGGCAAAGC

                *                
       7527 GGGCGGGAAGGGAAGAAACAG
          1 GGGCAGGAAGGGAAGAAACAG

                        **       
       7548 GGGCAGGAAGGGTGGAAACAG
          1 GGGCAGGAAGGGAAGAAACAG

             
       7569 G
          1 G

       7570 CTCAGAAGCC


Statistics
Matches: 19,  Mismatches: 3, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
  21   19  1.00

ACGTcount: A:0.35, C:0.09, G:0.53, T:0.02


Consensus pattern (21 bp):   
GGGCAGGAAGGGAAGAAACAG

Left flanking sequence: Indices 7027 -- 7526
CGCCTCGAGAAGCGTGCCTACGAAGCCCACCACCTTGACGACCACCGCCGGGTCGTCCAGCGCCA
CGTACTCGCGGATGGCGCCCACAAACCCCTCGAAGCCGCGCTGGAACTGCGCCAGGTCCTGCGCC
TGGTAGTGGGAGAACAAAATGCCCCAGAGCAGGAGCTTCATCTCCACCGGCAGCGCCGCGAGGAA
CCGCTTGATGGCGTCCACCGTGGGCAGCGCTGCGTCCTGGGGCGCCAAGATCTCCTCCACGAGCC
GGATGGACTCGTTGTTGGAGTCTGGCCCGAGGATCTTGGCGAACATCGCGAGCACCCGGAGCGTG
GTGGCCTCTGAGGCTACCGTGGCGGGCTCCAACGGGCGGAACAGCCGGAAGTTCGGGTAGGCCAC
CTGGGGGACCGTCCGGTGCTTCATCTGCTCCACCGTGGCCAACACAAACCGGTTGTCGGCGCTGT
AGATGTTGTAGCACTTGTAGAGGTGGACCTGGGCCCAGGCAAAGC


Right flanking sequence: Indices 7570 -- 8069
CTCAGAAGCCAGCTTAGAAGCCAGCTTAGAAGCCAGCTCAGAAGCCAGCTCAGAAGCCAGCTCAG
CAGCGAGGTTAGAGACAGGCTCGGTAGCCACGTTAGAAACAGGCTTAGAAGCCAGCTCAACAGTC
ACGCCTGCCACTGGCTCACCAGCCACACCCTCAACCGGCTCTGCCATCGACTCACCAGCCACCAC
CGACTCCACACCTCCCCACCGCACCACCCGCTCCACCACCCCCTCCCACCGCGCCACCACGTCCC
GGAGCTGCACCGTCTGGAGCTGGAGCGGCCCCACCCGCTTCAGCGCCACCAGCGCCACGAGCTCG
CGCTTGCGGTCCACGTACGCGCTCACCAAGAGCTCGTACGCCGCCACCAGCGCCTCGGGCCCCAA
CTTGCCCACGGCAAAGTCGCTCAAGTGCACCAACCACCGCACCACCGTGGCCACGAGCTTCGCGG
GCCACTCGTGGGTCACCACCGTGGGCAACAACCGCTCCAAAATCG



Found at i:7590 original size:12 final size:12

Alignment explanation


    Indices: 7569--7634  Score: 114
    Period size: 12  Copynumber: 5.5  Consensus size: 12

       7559 GTGGAAACAG

                        
       7569 GCTCAGAAGCCA
          1 GCTCAGAAGCCA

               *        
       7581 GCTTAGAAGCCA
          1 GCTCAGAAGCCA

               *        
       7593 GCTTAGAAGCCA
          1 GCTCAGAAGCCA

                        
       7605 GCTCAGAAGCCA
          1 GCTCAGAAGCCA

                        
       7617 GCTCAGAAGCCA
          1 GCTCAGAAGCCA

                  
       7629 GCTCAG
          1 GCTCAG

       7635 CAGCGAGGTT


Statistics
Matches: 52,  Mismatches: 2, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  12   52  1.00

ACGTcount: A:0.32, C:0.30, G:0.26, T:0.12


Consensus pattern (12 bp):   
GCTCAGAAGCCA

Left flanking sequence: Indices 7069 -- 7568
CACCGCCGGGTCGTCCAGCGCCACGTACTCGCGGATGGCGCCCACAAACCCCTCGAAGCCGCGCT
GGAACTGCGCCAGGTCCTGCGCCTGGTAGTGGGAGAACAAAATGCCCCAGAGCAGGAGCTTCATC
TCCACCGGCAGCGCCGCGAGGAACCGCTTGATGGCGTCCACCGTGGGCAGCGCTGCGTCCTGGGG
CGCCAAGATCTCCTCCACGAGCCGGATGGACTCGTTGTTGGAGTCTGGCCCGAGGATCTTGGCGA
ACATCGCGAGCACCCGGAGCGTGGTGGCCTCTGAGGCTACCGTGGCGGGCTCCAACGGGCGGAAC
AGCCGGAAGTTCGGGTAGGCCACCTGGGGGACCGTCCGGTGCTTCATCTGCTCCACCGTGGCCAA
CACAAACCGGTTGTCGGCGCTGTAGATGTTGTAGCACTTGTAGAGGTGGACCTGGGCCCAGGCAA
AGCGGGCGGGAAGGGAAGAAACAGGGGCAGGAAGGGTGGAAACAG


Right flanking sequence: Indices 7635 -- 8134
CAGCGAGGTTAGAGACAGGCTCGGTAGCCACGTTAGAAACAGGCTTAGAAGCCAGCTCAACAGTC
ACGCCTGCCACTGGCTCACCAGCCACACCCTCAACCGGCTCTGCCATCGACTCACCAGCCACCAC
CGACTCCACACCTCCCCACCGCACCACCCGCTCCACCACCCCCTCCCACCGCGCCACCACGTCCC
GGAGCTGCACCGTCTGGAGCTGGAGCGGCCCCACCCGCTTCAGCGCCACCAGCGCCACGAGCTCG
CGCTTGCGGTCCACGTACGCGCTCACCAAGAGCTCGTACGCCGCCACCAGCGCCTCGGGCCCCAA
CTTGCCCACGGCAAAGTCGCTCAAGTGCACCAACCACCGCACCACCGTGGCCACGAGCTTCGCGG
GCCACTCGTGGGTCACCACCGTGGGCAACAACCGCTCCAAAATCGCCGTCTTGGCCCGCAAGTAG
TGCATGTTGCCCGCGTTGATCGCGGCCACGGTGTCGGCCACCCCC



Found at i:7656 original size:24 final size:24

Alignment explanation


    Indices: 7629--7688  Score: 57
    Period size: 24  Copynumber: 2.5  Consensus size: 24

       7619 TCAGAAGCCA

                      * *      *    
       7629 GCTCAGCAGCGAGGTTAGAGACAG
          1 GCTCAGCAGCCACGTTAGAAACAG

                * *                 
       7653 GCTCGGTAGCCACGTTAGAAACAG
          1 GCTCAGCAGCCACGTTAGAAACAG

               *  *     
       7677 GCTTAGAAGCCA
          1 GCTCAGCAGCCA

       7689 GCTCAACAGT


Statistics
Matches: 28,  Mismatches: 8, Indels: 0
        0.78            0.22        0.00

Matches are distributed among these distances:
  24   28  1.00

ACGTcount: A:0.30, C:0.23, G:0.32, T:0.15


Consensus pattern (24 bp):   
GCTCAGCAGCCACGTTAGAAACAG

Left flanking sequence: Indices 7129 -- 7628
GCGCTGGAACTGCGCCAGGTCCTGCGCCTGGTAGTGGGAGAACAAAATGCCCCAGAGCAGGAGCT
TCATCTCCACCGGCAGCGCCGCGAGGAACCGCTTGATGGCGTCCACCGTGGGCAGCGCTGCGTCC
TGGGGCGCCAAGATCTCCTCCACGAGCCGGATGGACTCGTTGTTGGAGTCTGGCCCGAGGATCTT
GGCGAACATCGCGAGCACCCGGAGCGTGGTGGCCTCTGAGGCTACCGTGGCGGGCTCCAACGGGC
GGAACAGCCGGAAGTTCGGGTAGGCCACCTGGGGGACCGTCCGGTGCTTCATCTGCTCCACCGTG
GCCAACACAAACCGGTTGTCGGCGCTGTAGATGTTGTAGCACTTGTAGAGGTGGACCTGGGCCCA
GGCAAAGCGGGCGGGAAGGGAAGAAACAGGGGCAGGAAGGGTGGAAACAGGCTCAGAAGCCAGCT
TAGAAGCCAGCTTAGAAGCCAGCTCAGAAGCCAGCTCAGAAGCCA


Right flanking sequence: Indices 7689 -- 8188
GCTCAACAGTCACGCCTGCCACTGGCTCACCAGCCACACCCTCAACCGGCTCTGCCATCGACTCA
CCAGCCACCACCGACTCCACACCTCCCCACCGCACCACCCGCTCCACCACCCCCTCCCACCGCGC
CACCACGTCCCGGAGCTGCACCGTCTGGAGCTGGAGCGGCCCCACCCGCTTCAGCGCCACCAGCG
CCACGAGCTCGCGCTTGCGGTCCACGTACGCGCTCACCAAGAGCTCGTACGCCGCCACCAGCGCC
TCGGGCCCCAACTTGCCCACGGCAAAGTCGCTCAAGTGCACCAACCACCGCACCACCGTGGCCAC
GAGCTTCGCGGGCCACTCGTGGGTCACCACCGTGGGCAACAACCGCTCCAAAATCGCCGTCTTGG
CCCGCAAGTAGTGCATGTTGCCCGCGTTGATCGCGGCCACGGTGTCGGCCACCCCCTGGTCCAGC
AAGGGAGGCGCCTGGGACGCCGCCAGCAGCCCGGCGTCGCTGAAC



Found at i:8938 original size:12 final size:12

Alignment explanation


    Indices: 8921--8991  Score: 79
    Period size: 12  Copynumber: 5.9  Consensus size: 12

       8911 CACACCGCTC

                  *     
       8921 TGTTTCGAATCG
          1 TGTTTCAAATCG

                        
       8933 TGTTTCAAATCG
          1 TGTTTCAAATCG

                  *  * *
       8945 TGTTTCGAAGCC
          1 TGTTTCAAATCG

                        
       8957 TGTTTCAAATCG
          1 TGTTTCAAATCG

                   * * *
       8969 TGTTTCAGAGCC
          1 TGTTTCAAATCG

                       
       8981 TGTTTCAAATC
          1 TGTTTCAAATC

       8992 ACTCTCCCTC


Statistics
Matches: 47,  Mismatches: 12, Indels: 0
        0.80            0.20        0.00

Matches are distributed among these distances:
  12   47  1.00

ACGTcount: A:0.21, C:0.20, G:0.20, T:0.39


Consensus pattern (12 bp):   
TGTTTCAAATCG

Left flanking sequence: Indices 8421 -- 8920
CCTCGGGCGCCACCTGGGTGGCCGGGAGGTCCGGCAGCGAGTCGCCGACGCGGGCGAGCCGCTTG
GACGCGCGCATTTCCTGGGGCATCTCCTCGGGCGCGGGCTCGACCGGGTCGCCCGTGGCCAGCAC
CTCCACCACCTCGGTGGGCTCGGGCTCGGGGTCGACCTCCATGGGCTCGGGCTCCGGTTCCGGCG
CCAGTTTCGCCACCACCTCGACGGAGACCCGCTCGATGGGCAGCTCCGTGAGCCAGTACGCGTCC
ACGAGGTTGCGTTTGCCGCGCTTCTCGCGCACGAGCTCGTCGTCGAGCATGTTTTTCTCGACCTT
GGCGTCGAGCTGGTCGACGAGGGTGGTCCAGTCGACGGTGGGGCCGTCGGTGGCGGCCAGCCCCG
TGACCGAGATGCTGCACCGGCCGAACGCGCGGGTCTGGGCGATCTGGGCCGCAAAGTCGGCCTTG
ATGGAGTCGAGGTAGGAGTATGACGTCATAGAGGACACACCGCTC


Right flanking sequence: Indices 8992 -- 9491
ACTCTCCCTCTCCCTCCCCTCAAGAGCTGCTACAAGCGCCTCAAGCTCCGCCTTCACCCCTGGGT
CCACCGGGAGAAGCGCCAACAAGTCGTCCAGCTCCTGCTTCCCCGCGATCGAGTACTCAAGCGTG
AACCGCGCCAACCGGTGCTGGCCCACGTACGCGTAGAGGTCGTGGAGCACCGCGAGCATCCGCTC
GTCGCCCTCCTGGTAGAGAAGCGCTATGCAAAAGTCGTCCACCACCGAGTAGAACATCTGTTTGA
ACTTGTCCATCACCTCCTCGGCGTTGGGCGGCTCGGTGACCAGCGCCACCACCCCGTAGGCCCCG
TCGGCGATCGCCTGGTAGAGCGCGAGCGCGGACTCGTGGTCGGGCTCGTTGTCGGACTCGTCGGA
GGGGGAGGAGGGAGCCTCTGGCTCGGTTTCGGTGTCTTTCGGTTTGGTCACTTTTGAGTCGTCAG
GTTTGGACTCTTCTGAGTCTTCAGGCTCGGTTTTGGCCACTTCTG



Found at i:8953 original size:24 final size:24

Alignment explanation


    Indices: 8921--8991  Score: 108
    Period size: 24  Copynumber: 3.0  Consensus size: 24

       8911 CACACCGCTC

                     * *            
       8921 TGTTTCGAATCGTGTTTCAAATCG
          1 TGTTTCGAAGCCTGTTTCAAATCG

                                    
       8945 TGTTTCGAAGCCTGTTTCAAATCG
          1 TGTTTCGAAGCCTGTTTCAAATCG

                                    
       8969 TGTTTC-AGAGCCTGTTTCAAATC
          1 TGTTTCGA-AGCCTGTTTCAAATC

       8992 ACTCTCCCTC


Statistics
Matches: 44,  Mismatches: 2, Indels: 2
        0.92            0.04        0.04

Matches are distributed among these distances:
  23    1  0.02
  24   43  0.98

ACGTcount: A:0.21, C:0.20, G:0.20, T:0.39


Consensus pattern (24 bp):   
TGTTTCGAAGCCTGTTTCAAATCG

Left flanking sequence: Indices 8421 -- 8920
CCTCGGGCGCCACCTGGGTGGCCGGGAGGTCCGGCAGCGAGTCGCCGACGCGGGCGAGCCGCTTG
GACGCGCGCATTTCCTGGGGCATCTCCTCGGGCGCGGGCTCGACCGGGTCGCCCGTGGCCAGCAC
CTCCACCACCTCGGTGGGCTCGGGCTCGGGGTCGACCTCCATGGGCTCGGGCTCCGGTTCCGGCG
CCAGTTTCGCCACCACCTCGACGGAGACCCGCTCGATGGGCAGCTCCGTGAGCCAGTACGCGTCC
ACGAGGTTGCGTTTGCCGCGCTTCTCGCGCACGAGCTCGTCGTCGAGCATGTTTTTCTCGACCTT
GGCGTCGAGCTGGTCGACGAGGGTGGTCCAGTCGACGGTGGGGCCGTCGGTGGCGGCCAGCCCCG
TGACCGAGATGCTGCACCGGCCGAACGCGCGGGTCTGGGCGATCTGGGCCGCAAAGTCGGCCTTG
ATGGAGTCGAGGTAGGAGTATGACGTCATAGAGGACACACCGCTC


Right flanking sequence: Indices 8992 -- 9491
ACTCTCCCTCTCCCTCCCCTCAAGAGCTGCTACAAGCGCCTCAAGCTCCGCCTTCACCCCTGGGT
CCACCGGGAGAAGCGCCAACAAGTCGTCCAGCTCCTGCTTCCCCGCGATCGAGTACTCAAGCGTG
AACCGCGCCAACCGGTGCTGGCCCACGTACGCGTAGAGGTCGTGGAGCACCGCGAGCATCCGCTC
GTCGCCCTCCTGGTAGAGAAGCGCTATGCAAAAGTCGTCCACCACCGAGTAGAACATCTGTTTGA
ACTTGTCCATCACCTCCTCGGCGTTGGGCGGCTCGGTGACCAGCGCCACCACCCCGTAGGCCCCG
TCGGCGATCGCCTGGTAGAGCGCGAGCGCGGACTCGTGGTCGGGCTCGTTGTCGGACTCGTCGGA
GGGGGAGGAGGGAGCCTCTGGCTCGGTTTCGGTGTCTTTCGGTTTGGTCACTTTTGAGTCGTCAG
GTTTGGACTCTTCTGAGTCTTCAGGCTCGGTTTTGGCCACTTCTG



Found at i:9463 original size:24 final size:24

Alignment explanation


    Indices: 9422--9471  Score: 64
    Period size: 24  Copynumber: 2.1  Consensus size: 24

       9412 GGTGTCTTTC

                   *     *          
       9422 GGTTTGGTCACTTTTGAGTCGTCA
          1 GGTTTGGACACTTCTGAGTCGTCA

                     *          *   
       9446 GGTTTGGACTCTTCTGAGTCTTCA
          1 GGTTTGGACACTTCTGAGTCGTCA

              
       9470 GG
          1 GG

       9472 CTCGGTTTTG


Statistics
Matches: 22,  Mismatches: 4, Indels: 0
        0.85            0.15        0.00

Matches are distributed among these distances:
  24   22  1.00

ACGTcount: A:0.12, C:0.18, G:0.30, T:0.40


Consensus pattern (24 bp):   
GGTTTGGACACTTCTGAGTCGTCA

Left flanking sequence: Indices 8922 -- 9421
GTTTCGAATCGTGTTTCAAATCGTGTTTCGAAGCCTGTTTCAAATCGTGTTTCAGAGCCTGTTTC
AAATCACTCTCCCTCTCCCTCCCCTCAAGAGCTGCTACAAGCGCCTCAAGCTCCGCCTTCACCCC
TGGGTCCACCGGGAGAAGCGCCAACAAGTCGTCCAGCTCCTGCTTCCCCGCGATCGAGTACTCAA
GCGTGAACCGCGCCAACCGGTGCTGGCCCACGTACGCGTAGAGGTCGTGGAGCACCGCGAGCATC
CGCTCGTCGCCCTCCTGGTAGAGAAGCGCTATGCAAAAGTCGTCCACCACCGAGTAGAACATCTG
TTTGAACTTGTCCATCACCTCCTCGGCGTTGGGCGGCTCGGTGACCAGCGCCACCACCCCGTAGG
CCCCGTCGGCGATCGCCTGGTAGAGCGCGAGCGCGGACTCGTGGTCGGGCTCGTTGTCGGACTCG
TCGGAGGGGGAGGAGGGAGCCTCTGGCTCGGTTTCGGTGTCTTTC


Right flanking sequence: Indices 9472 -- 9971
CTCGGTTTTGGCCACTTCTGCGTGTTCCGAGTCCGATTTGGCCTCTTCCGAGCCGTCTTTCTGCA
GAGAGGGGTCGTTTTCGTGGTTGTTTGCGTCGTCCGGGGTGGTTTCAGGCCCGGTTTGGCTCAGC
TTGGGGTTGTTTTCGCCAGTTTCGCCCGTTTCAGCGTCTGTTTTGGTGGTTTCACCTTCTGTTTT
GGCAGTATCAGCCTCGTCGTTGGCAGTTTCACCCTCAGTTTTGGCGTTTTCAGACCCGTTCTCAA
CAGCATCCGGGCTTTTGACCCCACCCGGTGCCTGTTTGGCCGGTTCTGGGGTGGCTACCACCTTC
GTAGGGCTATTCGGGGCGGTGTGGAACTCGGAAAAGTCCTCGGCCGGCGGCCCGTCCACCTCCAT
GGGCACGGGACTCGGCGATTGGGTGGGTTTCACGCGATCAGACGGGTTTTCCGCGTCTGGAGAGT
CATTTTCAGCCATCTCCAGATCTTTTTGGCCCGGTTGTGACCCGT



Found at i:9653 original size:21 final size:21

Alignment explanation


    Indices: 9629--9668  Score: 62
    Period size: 21  Copynumber: 1.9  Consensus size: 21

       9619 AGTTTCGCCC

                  *              
       9629 GTTTCAGCGTCTGTTTTGGTG
          1 GTTTCACCGTCTGTTTTGGTG

                    *          
       9650 GTTTCACCTTCTGTTTTGG
          1 GTTTCACCGTCTGTTTTGG

       9669 CAGTATCAGC


Statistics
Matches: 17,  Mismatches: 2, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  21   17  1.00

ACGTcount: A:0.05, C:0.17, G:0.28, T:0.50


Consensus pattern (21 bp):   
GTTTCACCGTCTGTTTTGGTG

Left flanking sequence: Indices 9129 -- 9628
CCAACCGGTGCTGGCCCACGTACGCGTAGAGGTCGTGGAGCACCGCGAGCATCCGCTCGTCGCCC
TCCTGGTAGAGAAGCGCTATGCAAAAGTCGTCCACCACCGAGTAGAACATCTGTTTGAACTTGTC
CATCACCTCCTCGGCGTTGGGCGGCTCGGTGACCAGCGCCACCACCCCGTAGGCCCCGTCGGCGA
TCGCCTGGTAGAGCGCGAGCGCGGACTCGTGGTCGGGCTCGTTGTCGGACTCGTCGGAGGGGGAG
GAGGGAGCCTCTGGCTCGGTTTCGGTGTCTTTCGGTTTGGTCACTTTTGAGTCGTCAGGTTTGGA
CTCTTCTGAGTCTTCAGGCTCGGTTTTGGCCACTTCTGCGTGTTCCGAGTCCGATTTGGCCTCTT
CCGAGCCGTCTTTCTGCAGAGAGGGGTCGTTTTCGTGGTTGTTTGCGTCGTCCGGGGTGGTTTCA
GGCCCGGTTTGGCTCAGCTTGGGGTTGTTTTCGCCAGTTTCGCCC


Right flanking sequence: Indices 9669 -- 10168
CAGTATCAGCCTCGTCGTTGGCAGTTTCACCCTCAGTTTTGGCGTTTTCAGACCCGTTCTCAACA
GCATCCGGGCTTTTGACCCCACCCGGTGCCTGTTTGGCCGGTTCTGGGGTGGCTACCACCTTCGT
AGGGCTATTCGGGGCGGTGTGGAACTCGGAAAAGTCCTCGGCCGGCGGCCCGTCCACCTCCATGG
GCACGGGACTCGGCGATTGGGTGGGTTTCACGCGATCAGACGGGTTTTCCGCGTCTGGAGAGTCA
TTTTCAGCCATCTCCAGATCTTTTTGGCCCGGTTGTGACCCGTCACCACCCCCCTCGTGGTCGTT
TTCGCCCACTTTTGACCCATTTTCACCCCCGTCCTGGCCGTTTTCGCCCGGTTTCGATCCGTTTT
CAGCGCTGCCATCCACGTCCATCGCCTCGCCATCCACATCCATCGCCTCCCCGTCCTCGTCCACG
GGCTGCCCGTCAATCTCCACAATCACCGGCCCGCTGGCGGCCTCG



Found at i:9710 original size:21 final size:20

Alignment explanation


    Indices: 9650--9715  Score: 62
    Period size: 21  Copynumber: 3.2  Consensus size: 20

       9640 TGTTTTGGTG

                    *            
       9650 GTTTCACCTTCTGTTTTGGCA
          1 GTTTCACCCTC-GTTTTGGCA

              *   *       *      
       9671 GTATCAGCCTCGTCGTTGGCA
          1 GTTTCACCCTCGT-TTTGGCA

                                 
       9692 GTTTCACCCTCAGTTTTGGC-
          1 GTTTCACCCTC-GTTTTGGCA

                
       9712 GTTT
          1 GTTT

       9716 TCAGACCCGT


Statistics
Matches: 36,  Mismatches: 7, Indels: 5
        0.75            0.15        0.10

Matches are distributed among these distances:
  20    6  0.17
  21   28  0.78
  22    2  0.06

ACGTcount: A:0.11, C:0.26, G:0.23, T:0.41


Consensus pattern (20 bp):   
GTTTCACCCTCGTTTTGGCA

Left flanking sequence: Indices 9150 -- 9649
ACGCGTAGAGGTCGTGGAGCACCGCGAGCATCCGCTCGTCGCCCTCCTGGTAGAGAAGCGCTATG
CAAAAGTCGTCCACCACCGAGTAGAACATCTGTTTGAACTTGTCCATCACCTCCTCGGCGTTGGG
CGGCTCGGTGACCAGCGCCACCACCCCGTAGGCCCCGTCGGCGATCGCCTGGTAGAGCGCGAGCG
CGGACTCGTGGTCGGGCTCGTTGTCGGACTCGTCGGAGGGGGAGGAGGGAGCCTCTGGCTCGGTT
TCGGTGTCTTTCGGTTTGGTCACTTTTGAGTCGTCAGGTTTGGACTCTTCTGAGTCTTCAGGCTC
GGTTTTGGCCACTTCTGCGTGTTCCGAGTCCGATTTGGCCTCTTCCGAGCCGTCTTTCTGCAGAG
AGGGGTCGTTTTCGTGGTTGTTTGCGTCGTCCGGGGTGGTTTCAGGCCCGGTTTGGCTCAGCTTG
GGGTTGTTTTCGCCAGTTTCGCCCGTTTCAGCGTCTGTTTTGGTG


Right flanking sequence: Indices 9716 -- 10215
TCAGACCCGTTCTCAACAGCATCCGGGCTTTTGACCCCACCCGGTGCCTGTTTGGCCGGTTCTGG
GGTGGCTACCACCTTCGTAGGGCTATTCGGGGCGGTGTGGAACTCGGAAAAGTCCTCGGCCGGCG
GCCCGTCCACCTCCATGGGCACGGGACTCGGCGATTGGGTGGGTTTCACGCGATCAGACGGGTTT
TCCGCGTCTGGAGAGTCATTTTCAGCCATCTCCAGATCTTTTTGGCCCGGTTGTGACCCGTCACC
ACCCCCCTCGTGGTCGTTTTCGCCCACTTTTGACCCATTTTCACCCCCGTCCTGGCCGTTTTCGC
CCGGTTTCGATCCGTTTTCAGCGCTGCCATCCACGTCCATCGCCTCGCCATCCACATCCATCGCC
TCCCCGTCCTCGTCCACGGGCTGCCCGTCAATCTCCACAATCACCGGCCCGCTGGCGGCCTCGGG
CCTCGGCTTCCCCTTTTTCTTCTTCAACTTGGGCATTTCCGCCTC



Found at i:10059 original size:42 final size:42

Alignment explanation


    Indices: 9975--10060  Score: 100
    Period size: 42  Copynumber: 2.0  Consensus size: 42

       9965 GACCCGTCAC

                      *   *                *          
       9975 CACCCCCCTCGTGGTCGTTTTCGCCCACTTTTGACCCATTTT
          1 CACCCCCCTCCTGGCCGTTTTCGCCCACTTTCGACCCATTTT

                   *                  **      *  *    
      10017 CACCCCCGTCCTGGCCGTTTTCGCCCGGTTTCGATCCGTTTT
          1 CACCCCCCTCCTGGCCGTTTTCGCCCACTTTCGACCCATTTT

              
      10059 CA
          1 CA

      10061 GCGCTGCCAT


Statistics
Matches: 36,  Mismatches: 8, Indels: 0
        0.82            0.18        0.00

Matches are distributed among these distances:
  42   36  1.00

ACGTcount: A:0.08, C:0.41, G:0.17, T:0.34


Consensus pattern (42 bp):   
CACCCCCCTCCTGGCCGTTTTCGCCCACTTTCGACCCATTTT

Left flanking sequence: Indices 9475 -- 9974
GGTTTTGGCCACTTCTGCGTGTTCCGAGTCCGATTTGGCCTCTTCCGAGCCGTCTTTCTGCAGAG
AGGGGTCGTTTTCGTGGTTGTTTGCGTCGTCCGGGGTGGTTTCAGGCCCGGTTTGGCTCAGCTTG
GGGTTGTTTTCGCCAGTTTCGCCCGTTTCAGCGTCTGTTTTGGTGGTTTCACCTTCTGTTTTGGC
AGTATCAGCCTCGTCGTTGGCAGTTTCACCCTCAGTTTTGGCGTTTTCAGACCCGTTCTCAACAG
CATCCGGGCTTTTGACCCCACCCGGTGCCTGTTTGGCCGGTTCTGGGGTGGCTACCACCTTCGTA
GGGCTATTCGGGGCGGTGTGGAACTCGGAAAAGTCCTCGGCCGGCGGCCCGTCCACCTCCATGGG
CACGGGACTCGGCGATTGGGTGGGTTTCACGCGATCAGACGGGTTTTCCGCGTCTGGAGAGTCAT
TTTCAGCCATCTCCAGATCTTTTTGGCCCGGTTGTGACCCGTCAC


Right flanking sequence: Indices 10061 -- 10560
GCGCTGCCATCCACGTCCATCGCCTCGCCATCCACATCCATCGCCTCCCCGTCCTCGTCCACGGG
CTGCCCGTCAATCTCCACAATCACCGGCCCGCTGGCGGCCTCGGGCCTCGGCTTCCCCTTTTTCT
TCTTCAACTTGGGCATTTCCGCCTCGGCAGGCAACTGCGGCGGGTCCAGCGCCACGTGCGCCTTC
AACATGTCCAAGTAGAGCATCCCCCGGTTGCGGAACAAGAGGAACCGGAGCCGCTTGACGTTGGG
CAGCAAAAACAGGAGCTCGTCGACCAGCGTCAGGGCCTGGCCGTTCTGGAGCCCCTTTAGGAGCG
CCTCCTCTTCGTAGTAGTGGTTCAGGATGATCTCGAGCTTGAACACCTCCTTGTAGACGTCGTAG
CTGTGCCTCAACTCGCCATTCTGGTGGTGGGAGAGCGCCTTTTGGTAGAGCTGGATGGCCTGTTC
GATCTGGAGCTCGCGGGTGTGCTGCTCCTCCAACTCCTTTTTCGA



Found at i:10090 original size:21 final size:21

Alignment explanation


    Indices: 10066--10121  Score: 76
    Period size: 21  Copynumber: 2.7  Consensus size: 21

      10056 TTTCAGCGCT

                                 
      10066 GCCATCCACGTCCATCGCCTC
          1 GCCATCCACGTCCATCGCCTC

                     *           
      10087 GCCATCCACATCCATCGCCTC
          1 GCCATCCACGTCCATCGCCTC

            *  *   *      
      10108 CCCGTCCTCGTCCA
          1 GCCATCCACGTCCA

      10122 CGGGCTGCCC


Statistics
Matches: 30,  Mismatches: 5, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
  21   30  1.00

ACGTcount: A:0.14, C:0.54, G:0.12, T:0.20


Consensus pattern (21 bp):   
GCCATCCACGTCCATCGCCTC

Left flanking sequence: Indices 9566 -- 10065
TCGTCCGGGGTGGTTTCAGGCCCGGTTTGGCTCAGCTTGGGGTTGTTTTCGCCAGTTTCGCCCGT
TTCAGCGTCTGTTTTGGTGGTTTCACCTTCTGTTTTGGCAGTATCAGCCTCGTCGTTGGCAGTTT
CACCCTCAGTTTTGGCGTTTTCAGACCCGTTCTCAACAGCATCCGGGCTTTTGACCCCACCCGGT
GCCTGTTTGGCCGGTTCTGGGGTGGCTACCACCTTCGTAGGGCTATTCGGGGCGGTGTGGAACTC
GGAAAAGTCCTCGGCCGGCGGCCCGTCCACCTCCATGGGCACGGGACTCGGCGATTGGGTGGGTT
TCACGCGATCAGACGGGTTTTCCGCGTCTGGAGAGTCATTTTCAGCCATCTCCAGATCTTTTTGG
CCCGGTTGTGACCCGTCACCACCCCCCTCGTGGTCGTTTTCGCCCACTTTTGACCCATTTTCACC
CCCGTCCTGGCCGTTTTCGCCCGGTTTCGATCCGTTTTCAGCGCT


Right flanking sequence: Indices 10122 -- 10621
CGGGCTGCCCGTCAATCTCCACAATCACCGGCCCGCTGGCGGCCTCGGGCCTCGGCTTCCCCTTT
TTCTTCTTCAACTTGGGCATTTCCGCCTCGGCAGGCAACTGCGGCGGGTCCAGCGCCACGTGCGC
CTTCAACATGTCCAAGTAGAGCATCCCCCGGTTGCGGAACAAGAGGAACCGGAGCCGCTTGACGT
TGGGCAGCAAAAACAGGAGCTCGTCGACCAGCGTCAGGGCCTGGCCGTTCTGGAGCCCCTTTAGG
AGCGCCTCCTCTTCGTAGTAGTGGTTCAGGATGATCTCGAGCTTGAACACCTCCTTGTAGACGTC
GTAGCTGTGCCTCAACTCGCCATTCTGGTGGTGGGAGAGCGCCTTTTGGTAGAGCTGGATGGCCT
GTTCGATCTGGAGCTCGCGGGTGTGCTGCTCCTCCAACTCCTTTTTCGAGTCCTCCACGAGGTTG
AGCGGGTGGAAGCTGGACATCGAGCGGGCTGGGCGCGTTAAGAAT



Found at i:13712 original size:9 final size:9

Alignment explanation


    Indices: 13698--13730  Score: 57
    Period size: 9  Copynumber: 3.7  Consensus size: 9

      13688 ATGTAAACCG

                     
      13698 GGGCCACCA
          1 GGGCCACCA

                     
      13707 GGGCCACCA
          1 GGGCCACCA

                 *   
      13716 GGGCCTCCA
          1 GGGCCACCA

                  
      13725 GGGCCA
          1 GGGCCA

      13731 GTGCCACCTG


Statistics
Matches: 22,  Mismatches: 2, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
   9   22  1.00

ACGTcount: A:0.18, C:0.42, G:0.36, T:0.03


Consensus pattern (9 bp):   
GGGCCACCA

Left flanking sequence: Indices 13198 -- 13697
AAAACGCTTAATCGTACTTTTATGCTACAAACCAACTGTTATGCTATTCGGACTCGTACTCAAAC
CCGAGCTCTTCTTCTTCTTCGGACATTCTCCGGGCTTCCTCTGGTGAGATCAGTGGGTCGGGCTC
GGAGATGGGCGTCGGAGACGGCAGTTCCTGGATCAACGGCTTGGGCGGAGTGGGCGCTGGAGAGT
CTACAGCCACCGCTAGGGGTTTCTTGGGCACAGGAGCCGCCAACGGGGGCTTTGGTGGCACATGC
AACTGCTCCGGCTGCTCCACTGGATCGTAGATCAAGTCTCCATCATCGTTGAAGTGGAACATGTT
GTCCAGCATCGTCAAGAGAGCGATCTCGTCGGCGTCTCCCATCGACAGGGCCACCGCGGGAGAGT
CTCGTGGACGCCCCACGGCCTCCATAAGCTCGGAACCGGGCCGAAACCCGACCGAGTTGAGCCCT
GAATGGGGAGTTTGGGACCTTTCAACATCAAAGCCATGTAAACCG


Right flanking sequence: Indices 13731 -- 14230
GTGCCACCTGCAGTGTGTTTTCCACTTTTATTTTCATCAGCCTCTTCAGACTCAGGCACGAAACC
GCCCCCTTCTTCGTCCACGAATCCCCCGCCTTCATCATCATCCACGATGAAACCCCCACCTTCAT
CATCCACCACTCCACCTTCATCGTCATCCACAACAAATCCTCCACCTTCATCGTCTTCCACAAAA
CCTCCACCTTCGTCTTCCACCATAAACCCACCACCTTCATCACCTTCACCTCTCTCATTCTCAAA
CCCGCCAGCAGGTTCGTCGTGAAAGAACCCGGCCTCGGGTGACTCTGTGGTGAACGGCCGTCTCT
CGTCTATATCTGGCCCACTGCCATCACTCTCCACCACAAAGGAAGCGTCAGAGTCACCATCGTCG
TCTCCAATAAACCCCCCTTCCCCCTCGAATTCGTCTTCGTCTCCAATAAACCCCCCTTCTCCTTC
GTCCTCGTCCTCAACCTCACCGTGCACCCGGTCCAATCGCTCACC



Found at i:13931 original size:27 final size:29

Alignment explanation


    Indices: 13870--13966  Score: 105
    Period size: 30  Copynumber: 3.4  Consensus size: 29

      13860 TCATCCACCA

                            *           * 
      13870 CTCCACCTTCATCGTCATCCACAACAAATC
          1 CTCCACCTTCATCGTCTTCCAC-ACAAACC

                                         
      13900 CTCCACCTTCATCGTCTTCCACA-AAA-C
          1 CTCCACCTTCATCGTCTTCCACACAAACC

                                    *     
      13927 CTCCACC-T--TCGTCTTCCACCATAAACC
          1 CTCCACCTTCATCGTCTTCCA-CACAAACC

             *           
      13954 CACCACCTTCATC
          1 CTCCACCTTCATC

      13967 ACCTTCACCT


Statistics
Matches: 59,  Mismatches: 2, Indels: 12
        0.81            0.03        0.16

Matches are distributed among these distances:
  24   10  0.17
  25    2  0.03
  26    4  0.07
  27   15  0.25
  28    4  0.07
  29    1  0.02
  30   23  0.39

ACGTcount: A:0.26, C:0.46, G:0.03, T:0.25


Consensus pattern (29 bp):   
CTCCACCTTCATCGTCTTCCACACAAACC

Left flanking sequence: Indices 13370 -- 13869
GGGCGGAGTGGGCGCTGGAGAGTCTACAGCCACCGCTAGGGGTTTCTTGGGCACAGGAGCCGCCA
ACGGGGGCTTTGGTGGCACATGCAACTGCTCCGGCTGCTCCACTGGATCGTAGATCAAGTCTCCA
TCATCGTTGAAGTGGAACATGTTGTCCAGCATCGTCAAGAGAGCGATCTCGTCGGCGTCTCCCAT
CGACAGGGCCACCGCGGGAGAGTCTCGTGGACGCCCCACGGCCTCCATAAGCTCGGAACCGGGCC
GAAACCCGACCGAGTTGAGCCCTGAATGGGGAGTTTGGGACCTTTCAACATCAAAGCCATGTAAA
CCGGGGCCACCAGGGCCACCAGGGCCTCCAGGGCCAGTGCCACCTGCAGTGTGTTTTCCACTTTT
ATTTTCATCAGCCTCTTCAGACTCAGGCACGAAACCGCCCCCTTCTTCGTCCACGAATCCCCCGC
CTTCATCATCATCCACGATGAAACCCCCACCTTCATCATCCACCA


Right flanking sequence: Indices 13967 -- 14466
ACCTTCACCTCTCTCATTCTCAAACCCGCCAGCAGGTTCGTCGTGAAAGAACCCGGCCTCGGGTG
ACTCTGTGGTGAACGGCCGTCTCTCGTCTATATCTGGCCCACTGCCATCACTCTCCACCACAAAG
GAAGCGTCAGAGTCACCATCGTCGTCTCCAATAAACCCCCCTTCCCCCTCGAATTCGTCTTCGTC
TCCAATAAACCCCCCTTCTCCTTCGTCCTCGTCCTCAACCTCACCGTGCACCCGGTCCAATCGCT
CACCCAACCGGAGCTTGGTAATGAAAAACTTCCAGAGCTTGAGGCTTTGGAGCTCCTTCTCGCGG
CGTACCTGCTCCACCTCTTCCTCGATCAAACAGTCCATCACCGCTTCCATGGCTTCACGATACTG
AGCATCAATAACCACTCCTCCTTCCTTGGCCTTGACGTTGGCCCGGCCCTTGAACGAGAACCCCA
CCACTGCTCGTGCGTAGTCCACGCCAATGATGCGGGCTGCTCGCT



Found at i:13943 original size:24 final size:24

Alignment explanation


    Indices: 13893--13963  Score: 70
    Period size: 27  Copynumber: 2.7  Consensus size: 24

      13883 GTCATCCACA

                 *                     
      13893 ACAAATCCTCCACCTTCATCGTCTTCC
          1 ACAAAACCTCCACC-T--TCGTCTTCC

                                    
      13920 ACAAAACCTCCACCTTCGTCTTCC
          1 ACAAAACCTCCACCTTCGTCTTCC

                       *        
      13944 ACCATAAACCCACCACCTTC
          1 A-CA-AAA-CCTCCACCTTC

      13964 ATCACCTTCA


Statistics
Matches: 39,  Mismatches: 2, Indels: 6
        0.83            0.04        0.13

Matches are distributed among these distances:
  24   10  0.26
  25    2  0.05
  26    4  0.10
  27   23  0.59

ACGTcount: A:0.27, C:0.46, G:0.03, T:0.24


Consensus pattern (24 bp):   
ACAAAACCTCCACCTTCGTCTTCC

Left flanking sequence: Indices 13393 -- 13892
CTACAGCCACCGCTAGGGGTTTCTTGGGCACAGGAGCCGCCAACGGGGGCTTTGGTGGCACATGC
AACTGCTCCGGCTGCTCCACTGGATCGTAGATCAAGTCTCCATCATCGTTGAAGTGGAACATGTT
GTCCAGCATCGTCAAGAGAGCGATCTCGTCGGCGTCTCCCATCGACAGGGCCACCGCGGGAGAGT
CTCGTGGACGCCCCACGGCCTCCATAAGCTCGGAACCGGGCCGAAACCCGACCGAGTTGAGCCCT
GAATGGGGAGTTTGGGACCTTTCAACATCAAAGCCATGTAAACCGGGGCCACCAGGGCCACCAGG
GCCTCCAGGGCCAGTGCCACCTGCAGTGTGTTTTCCACTTTTATTTTCATCAGCCTCTTCAGACT
CAGGCACGAAACCGCCCCCTTCTTCGTCCACGAATCCCCCGCCTTCATCATCATCCACGATGAAA
CCCCCACCTTCATCATCCACCACTCCACCTTCATCGTCATCCACA


Right flanking sequence: Indices 13964 -- 14463
ATCACCTTCACCTCTCTCATTCTCAAACCCGCCAGCAGGTTCGTCGTGAAAGAACCCGGCCTCGG
GTGACTCTGTGGTGAACGGCCGTCTCTCGTCTATATCTGGCCCACTGCCATCACTCTCCACCACA
AAGGAAGCGTCAGAGTCACCATCGTCGTCTCCAATAAACCCCCCTTCCCCCTCGAATTCGTCTTC
GTCTCCAATAAACCCCCCTTCTCCTTCGTCCTCGTCCTCAACCTCACCGTGCACCCGGTCCAATC
GCTCACCCAACCGGAGCTTGGTAATGAAAAACTTCCAGAGCTTGAGGCTTTGGAGCTCCTTCTCG
CGGCGTACCTGCTCCACCTCTTCCTCGATCAAACAGTCCATCACCGCTTCCATGGCTTCACGATA
CTGAGCATCAATAACCACTCCTCCTTCCTTGGCCTTGACGTTGGCCCGGCCCTTGAACGAGAACC
CCACCACTGCTCGTGCGTAGTCCACGCCAATGATGCGGGCTGCTC



Found at i:21976 original size:16 final size:13

Alignment explanation


    Indices: 21943--21969  Score: 54
    Period size: 13  Copynumber: 2.1  Consensus size: 13

      21933 GGTTGTGGAG

                         
      21943 GTGGTGGAGGGTT
          1 GTGGTGGAGGGTT

                         
      21956 GTGGTGGAGGGTT
          1 GTGGTGGAGGGTT

             
      21969 G
          1 G

      21970 GTATGGTTCT


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   14  1.00

ACGTcount: A:0.07, C:0.00, G:0.63, T:0.30


Consensus pattern (13 bp):   
GTGGTGGAGGGTT

Left flanking sequence: Indices 21443 -- 21942
AACCGGCACCGCCACCGGGGCATTGATCCCGTGGACCCACGCCTTGACGTCCGAGGCAAGGTCCA
GCACCCGGTACTCGCCGTCGGGGCCCTGGCTCAGCTTCTCGTACCCTCTCATGGCTGGAGCAAGG
ACAAGAGCCCGGGGGAAGGCAGACACCAACTGGTCCCAGATCAAGTCGTAGGTGTCGTTGTTGTC
GGGGAACCCGTGGAGAAGGAAGATGATCCGGTCAAACGGCTGCGTGGCGTAGACCTCGTTCTCCT
TGTGGGTCAGCTTGGCGGAAAACGTCCGCTGGTGGTTGCGCAAGTGGACAGTGTACGTGGGGGAC
ATTGCTAGCGAGCTCGGGGTGGTGGTTTGTGTTTGTGGTGGTTCTGGTGGCTACGGGGTTATATG
GTGGGTCCATGTGATAGTTGCTAGGGTGGCCTGCATATGGCATGTGAAAGCGAAAGGTGGGGATG
GTGGGGACGGAGGTGGGGGCGGTGGAGGTAATGGGGGTTGTGGAG


Right flanking sequence: Indices 21970 -- 22469
GTATGGTTCTGTGGTCTGTGTGGGTGTGCCATTGAGTCGGTTGGGCTGGTAGGTGTCGGTGGAGG
TGGTGTAGATGGCTTGGTTTTAGGCTTGCATTGTGGGGAAGGAAGGCTGACATTGGAGACAAGTT
CCGTGGTTAGTAGGGGTAGCAACTTCGAGCTAACACATGGCACCTGATTGCTTTGCTTGTCTTGT
TTGCCTCGATTTTTCTACCATCGGTAGCCCGTTCCGCTCGGAGTTAATGCCACAAACTCGGAACC
AAACAGAGTCCGAGCCGAAGAGGTCTGTCACCAGTTGTAATTGATGTCGGCTGCAGCAATAGATG
GCGATTGCTTACATGTAGGCGTCAGATAGGGGTGTTGGTTGGTGGCTCCAAGTACGACAACTTTC
CCACTTCATACGATCCGCCTACCAGAATCATTTTTCGAACTGGTGTACCATAGCCACCAATACCC
ACCAATACCCACCAACAAACCACGCTACGTCTAGACTATCAAAAT



Found at i:22428 original size:10 final size:10

Alignment explanation


    Indices: 22413--22439  Score: 54
    Period size: 10  Copynumber: 2.7  Consensus size: 10

      22403 TGTACCATAG

                      
      22413 CCACCAATAC
          1 CCACCAATAC

                      
      22423 CCACCAATAC
          1 CCACCAATAC

                   
      22433 CCACCAA
          1 CCACCAA

      22440 CAAACCACGC


Statistics
Matches: 17,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  10   17  1.00

ACGTcount: A:0.41, C:0.52, G:0.00, T:0.07


Consensus pattern (10 bp):   
CCACCAATAC

Left flanking sequence: Indices 21913 -- 22412
GGGGCGGTGGAGGTAATGGGGGTTGTGGAGGTGGTGGAGGGTTGTGGTGGAGGGTTGGTATGGTT
CTGTGGTCTGTGTGGGTGTGCCATTGAGTCGGTTGGGCTGGTAGGTGTCGGTGGAGGTGGTGTAG
ATGGCTTGGTTTTAGGCTTGCATTGTGGGGAAGGAAGGCTGACATTGGAGACAAGTTCCGTGGTT
AGTAGGGGTAGCAACTTCGAGCTAACACATGGCACCTGATTGCTTTGCTTGTCTTGTTTGCCTCG
ATTTTTCTACCATCGGTAGCCCGTTCCGCTCGGAGTTAATGCCACAAACTCGGAACCAAACAGAG
TCCGAGCCGAAGAGGTCTGTCACCAGTTGTAATTGATGTCGGCTGCAGCAATAGATGGCGATTGC
TTACATGTAGGCGTCAGATAGGGGTGTTGGTTGGTGGCTCCAAGTACGACAACTTTCCCACTTCA
TACGATCCGCCTACCAGAATCATTTTTCGAACTGGTGTACCATAG


Right flanking sequence: Indices 22440 -- 22939
CAAACCACGCTACGTCTAGACTATCAAAATACAAATCACCTCCAATGATTCCACCCCCCTTAAAC
CCACCATTACACCTACCCATTACTCCCACCCCGCCTCCCTACCCCCCACTTTGAGTACTCTCACT
TGACAGGCTTCCATGCATACACCCTGCATTTGCAACCGTTTTGCAACCGTTCTCCACCGTTTTCC
ACCGTTCTCCACCGTTCTCCACCGTTTCTATAACCGTACTATGTGCTATTAATGTCTCTTCTATG
CTACCCTCCCATCTCCCATGCAACACCCTGCATTCAACCGCTGCAACCTATAACCTTACTAGTGC
TACTAACTCCTCGTCCTAAAAGATGTCGTTCTCGTAGGGACAATTGATCGAGCTGTGCCCGTCCC
TCTCACAAAGCCCACACCAGTCCAGCCTTCCTGCGGCCGGGTCCAGCGGCTCCGGGGTAAAGATC
GGAAGCAGGTCCATCAACTGCGACGTCTCCGCCACCACCGACTCC



Found at i:22630 original size:10 final size:10

Alignment explanation


    Indices: 22615--22660  Score: 83
    Period size: 10  Copynumber: 4.6  Consensus size: 10

      22605 CCGTTTTGCA

                      
      22615 ACCGTTCTCC
          1 ACCGTTCTCC

                  *   
      22625 ACCGTTTTCC
          1 ACCGTTCTCC

                      
      22635 ACCGTTCTCC
          1 ACCGTTCTCC

                      
      22645 ACCGTTCTCC
          1 ACCGTTCTCC

                  
      22655 ACCGTT
          1 ACCGTT

      22661 TCTATAACCG


Statistics
Matches: 34,  Mismatches: 2, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  10   34  1.00

ACGTcount: A:0.11, C:0.46, G:0.11, T:0.33


Consensus pattern (10 bp):   
ACCGTTCTCC

Left flanking sequence: Indices 22115 -- 22614
GTAGCAACTTCGAGCTAACACATGGCACCTGATTGCTTTGCTTGTCTTGTTTGCCTCGATTTTTC
TACCATCGGTAGCCCGTTCCGCTCGGAGTTAATGCCACAAACTCGGAACCAAACAGAGTCCGAGC
CGAAGAGGTCTGTCACCAGTTGTAATTGATGTCGGCTGCAGCAATAGATGGCGATTGCTTACATG
TAGGCGTCAGATAGGGGTGTTGGTTGGTGGCTCCAAGTACGACAACTTTCCCACTTCATACGATC
CGCCTACCAGAATCATTTTTCGAACTGGTGTACCATAGCCACCAATACCCACCAATACCCACCAA
CAAACCACGCTACGTCTAGACTATCAAAATACAAATCACCTCCAATGATTCCACCCCCCTTAAAC
CCACCATTACACCTACCCATTACTCCCACCCCGCCTCCCTACCCCCCACTTTGAGTACTCTCACT
TGACAGGCTTCCATGCATACACCCTGCATTTGCAACCGTTTTGCA


Right flanking sequence: Indices 22661 -- 23160
TCTATAACCGTACTATGTGCTATTAATGTCTCTTCTATGCTACCCTCCCATCTCCCATGCAACAC
CCTGCATTCAACCGCTGCAACCTATAACCTTACTAGTGCTACTAACTCCTCGTCCTAAAAGATGT
CGTTCTCGTAGGGACAATTGATCGAGCTGTGCCCGTCCCTCTCACAAAGCCCACACCAGTCCAGC
CTTCCTGCGGCCGGGTCCAGCGGCTCCGGGGTAAAGATCGGAAGCAGGTCCATCAACTGCGACGT
CTCCGCCACCACCGACTCCTCGAGCCCCTCGGGGATGGTCAGCGCGCGCCCGAGCGACGGCGACA
GGCCCCGCGACGCCGACGGGCCCACCATCAGCGCCGCGGCCATCAGCTCGCGGCTCGGGGGCGCC
ATCGACGAGTAGGCCCGCAGCCGGGTGCGCTCGGCCGTCAACTGGGACAGCAACCGCGAGATCTC
CTCGCGCTTGTCCTGGAGCTCGGTTTTGTGGACCTCCTCGAGCTC



Found at i:22640 original size:20 final size:20

Alignment explanation


    Indices: 22604--22660  Score: 87
    Period size: 20  Copynumber: 2.8  Consensus size: 20

      22594 TGCATTTGCA

                      *          
      22604 ACCGTTTTGCAACCGTTCTCC
          1 ACCGTTTT-CCACCGTTCTCC

                                
      22625 ACCGTTTTCCACCGTTCTCC
          1 ACCGTTTTCCACCGTTCTCC

                  *         
      22645 ACCGTTCTCCACCGTT
          1 ACCGTTTTCCACCGTT

      22661 TCTATAACCG


Statistics
Matches: 34,  Mismatches: 2, Indels: 1
        0.92            0.05        0.03

Matches are distributed among these distances:
  20   26  0.76
  21    8  0.24

ACGTcount: A:0.12, C:0.42, G:0.12, T:0.33


Consensus pattern (20 bp):   
ACCGTTTTCCACCGTTCTCC

Left flanking sequence: Indices 22104 -- 22603
GGTTAGTAGGGGTAGCAACTTCGAGCTAACACATGGCACCTGATTGCTTTGCTTGTCTTGTTTGC
CTCGATTTTTCTACCATCGGTAGCCCGTTCCGCTCGGAGTTAATGCCACAAACTCGGAACCAAAC
AGAGTCCGAGCCGAAGAGGTCTGTCACCAGTTGTAATTGATGTCGGCTGCAGCAATAGATGGCGA
TTGCTTACATGTAGGCGTCAGATAGGGGTGTTGGTTGGTGGCTCCAAGTACGACAACTTTCCCAC
TTCATACGATCCGCCTACCAGAATCATTTTTCGAACTGGTGTACCATAGCCACCAATACCCACCA
ATACCCACCAACAAACCACGCTACGTCTAGACTATCAAAATACAAATCACCTCCAATGATTCCAC
CCCCCTTAAACCCACCATTACACCTACCCATTACTCCCACCCCGCCTCCCTACCCCCCACTTTGA
GTACTCTCACTTGACAGGCTTCCATGCATACACCCTGCATTTGCA


Right flanking sequence: Indices 22661 -- 23160
TCTATAACCGTACTATGTGCTATTAATGTCTCTTCTATGCTACCCTCCCATCTCCCATGCAACAC
CCTGCATTCAACCGCTGCAACCTATAACCTTACTAGTGCTACTAACTCCTCGTCCTAAAAGATGT
CGTTCTCGTAGGGACAATTGATCGAGCTGTGCCCGTCCCTCTCACAAAGCCCACACCAGTCCAGC
CTTCCTGCGGCCGGGTCCAGCGGCTCCGGGGTAAAGATCGGAAGCAGGTCCATCAACTGCGACGT
CTCCGCCACCACCGACTCCTCGAGCCCCTCGGGGATGGTCAGCGCGCGCCCGAGCGACGGCGACA
GGCCCCGCGACGCCGACGGGCCCACCATCAGCGCCGCGGCCATCAGCTCGCGGCTCGGGGGCGCC
ATCGACGAGTAGGCCCGCAGCCGGGTGCGCTCGGCCGTCAACTGGGACAGCAACCGCGAGATCTC
CTCGCGCTTGTCCTGGAGCTCGGTTTTGTGGACCTCCTCGAGCTC



Found at i:22997 original size:18 final size:18

Alignment explanation


    Indices: 22974--23008  Score: 52
    Period size: 18  Copynumber: 1.9  Consensus size: 18

      22964 GCGCGCCCGA

                  *           
      22974 GCGACGGCGACAGGCCCC
          1 GCGACGCCGACAGGCCCC

                       *     
      22992 GCGACGCCGACGGGCCC
          1 GCGACGCCGACAGGCCC

      23009 ACCATCAGCG


Statistics
Matches: 15,  Mismatches: 2, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  18   15  1.00

ACGTcount: A:0.14, C:0.46, G:0.40, T:0.00


Consensus pattern (18 bp):   
GCGACGCCGACAGGCCCC

Left flanking sequence: Indices 22474 -- 22973
ATCACCTCCAATGATTCCACCCCCCTTAAACCCACCATTACACCTACCCATTACTCCCACCCCGC
CTCCCTACCCCCCACTTTGAGTACTCTCACTTGACAGGCTTCCATGCATACACCCTGCATTTGCA
ACCGTTTTGCAACCGTTCTCCACCGTTTTCCACCGTTCTCCACCGTTCTCCACCGTTTCTATAAC
CGTACTATGTGCTATTAATGTCTCTTCTATGCTACCCTCCCATCTCCCATGCAACACCCTGCATT
CAACCGCTGCAACCTATAACCTTACTAGTGCTACTAACTCCTCGTCCTAAAAGATGTCGTTCTCG
TAGGGACAATTGATCGAGCTGTGCCCGTCCCTCTCACAAAGCCCACACCAGTCCAGCCTTCCTGC
GGCCGGGTCCAGCGGCTCCGGGGTAAAGATCGGAAGCAGGTCCATCAACTGCGACGTCTCCGCCA
CCACCGACTCCTCGAGCCCCTCGGGGATGGTCAGCGCGCGCCCGA


Right flanking sequence: Indices 23009 -- 23508
ACCATCAGCGCCGCGGCCATCAGCTCGCGGCTCGGGGGCGCCATCGACGAGTAGGCCCGCAGCCG
GGTGCGCTCGGCCGTCAACTGGGACAGCAACCGCGAGATCTCCTCGCGCTTGTCCTGGAGCTCGG
TTTTGTGGACCTCCTCGAGCTCGTCGAGCGAGTGCTGGACCTCCAGGAGCTCGTCGAACGTCGGG
CGCATCGTCAACTCGTGGCGGAGCTCCTCGATCTGGGCCTCGAGCCGCAGCACCTGGTCCAGGTC
GCGCGGGGACCCGGGGGTGTCGTCGGCGCGGGCCTTGAGCTTGGTCTCGAGCGCGGCCTTGTCCA
CCATGATCGCCTCCACCTGGCTCTGGAGCTGGGCGATGAGGGTGTCGTCCGCCAGGGCCTTGGCC
CGGAGCTCGGCGAGCTGGGCTGCCTGCTCCTTGGTTTCCTTCTCTGCTAGTTGCTTGGCTTCCTT
CTCCGCCAGCTCCCTGGCTTCCTTCTCTGCCTTCTCTCTGGCTTC



Found at i:23445 original size:24 final size:24

Alignment explanation


    Indices: 23418--23519  Score: 91
    Period size: 24  Copynumber: 4.2  Consensus size: 24

      23408 GCGAGCTGGG

                           *        
      23418 CTGCCTGCTCCTTGGTTTCCTTCT
          1 CTGCCTGCTCCTTGGCTTCCTTCT

                    * *              
      23442 CTG-CTAGTTGCTTGGCTTCCTTCT
          1 CTGCCT-GCTCCTTGGCTTCCTTCT

             *   *     *            
      23466 CCGCCAGCTCCCTGGCTTCCTTCT
          1 CTGCCTGCTCCTTGGCTTCCTTCT

                  *             *  * 
      23490 CTGCCTTCT-CTCTGGCTTCTTTTT
          1 CTGCCTGCTCCT-TGGCTTCCTTCT

                  
      23514 CTGCCT
          1 CTGCCT

      23520 TCTCTGCCTT


Statistics
Matches: 61,  Mismatches: 14, Indels: 6
        0.75            0.17        0.07

Matches are distributed among these distances:
  23    3  0.05
  24   57  0.93
  25    1  0.02

ACGTcount: A:0.02, C:0.38, G:0.17, T:0.43


Consensus pattern (24 bp):   
CTGCCTGCTCCTTGGCTTCCTTCT

Left flanking sequence: Indices 22918 -- 23417
CGTCTCCGCCACCACCGACTCCTCGAGCCCCTCGGGGATGGTCAGCGCGCGCCCGAGCGACGGCG
ACAGGCCCCGCGACGCCGACGGGCCCACCATCAGCGCCGCGGCCATCAGCTCGCGGCTCGGGGGC
GCCATCGACGAGTAGGCCCGCAGCCGGGTGCGCTCGGCCGTCAACTGGGACAGCAACCGCGAGAT
CTCCTCGCGCTTGTCCTGGAGCTCGGTTTTGTGGACCTCCTCGAGCTCGTCGAGCGAGTGCTGGA
CCTCCAGGAGCTCGTCGAACGTCGGGCGCATCGTCAACTCGTGGCGGAGCTCCTCGATCTGGGCC
TCGAGCCGCAGCACCTGGTCCAGGTCGCGCGGGGACCCGGGGGTGTCGTCGGCGCGGGCCTTGAG
CTTGGTCTCGAGCGCGGCCTTGTCCACCATGATCGCCTCCACCTGGCTCTGGAGCTGGGCGATGA
GGGTGTCGTCCGCCAGGGCCTTGGCCCGGAGCTCGGCGAGCTGGG


Right flanking sequence: Indices 23520 -- 24019
TCTCTGCCTTCGCCCTGGCCTCCCTCTCCTTCTCCTTCTCCTCCTTCTCCCGCTCCACCGCCCCC
TCGAGCTCCTCCACCTTCGCCCGGAGCTCCAAGATCGCCTTCTCCTGCTGGTTGTTCTCGTCCGC
CAACTGCTTGTTCTTGGCGAGCAGGTCGGTGCTGTCCATGGCCCCCGAGAGGCCCCCGAGCTCCT
TCTCCTCCTTGAACATCTTGTTCTCCTTGGCGAGCTTGGCCATCTGCTTCTGGAGCTGCTCCACG
AGCGTCAGCTGGTCCGCCTCCGCCATCGCCTCCTTGATGGCGATGTTCTCGCGCGTGAGCAGCTT
GATCTTGCCCTCCAAGTCGTCGAGCTTGTCCGGGTCGGACCCGCCCTCGGCGAGGAGCTGTTTGA
GCAGCCGGTTCTTTTCCTTGAGCTCGACGAGCTCGGAGCTGGGCCGCCCGTTGAGCCCGGTGCCC
GCCTCGGACTCGTTGTGGGTGTTGTCCTGGGGGTTCTGGGCGTGT



Found at i:24060 original size:12 final size:12

Alignment explanation


    Indices: 24043--24067  Score: 50
    Period size: 12  Copynumber: 2.1  Consensus size: 12

      24033 CCGTCTGGCG

                        
      24043 CCGGGCCTCCTC
          1 CCGGGCCTCCTC

                        
      24055 CCGGGCCTCCTC
          1 CCGGGCCTCCTC

             
      24067 C
          1 C

      24068 GTCTCACGCC


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   13  1.00

ACGTcount: A:0.00, C:0.60, G:0.24, T:0.16


Consensus pattern (12 bp):   
CCGGGCCTCCTC

Left flanking sequence: Indices 23543 -- 24042
CTCTCCTTCTCCTTCTCCTCCTTCTCCCGCTCCACCGCCCCCTCGAGCTCCTCCACCTTCGCCCG
GAGCTCCAAGATCGCCTTCTCCTGCTGGTTGTTCTCGTCCGCCAACTGCTTGTTCTTGGCGAGCA
GGTCGGTGCTGTCCATGGCCCCCGAGAGGCCCCCGAGCTCCTTCTCCTCCTTGAACATCTTGTTC
TCCTTGGCGAGCTTGGCCATCTGCTTCTGGAGCTGCTCCACGAGCGTCAGCTGGTCCGCCTCCGC
CATCGCCTCCTTGATGGCGATGTTCTCGCGCGTGAGCAGCTTGATCTTGCCCTCCAAGTCGTCGA
GCTTGTCCGGGTCGGACCCGCCCTCGGCGAGGAGCTGTTTGAGCAGCCGGTTCTTTTCCTTGAGC
TCGACGAGCTCGGAGCTGGGCCGCCCGTTGAGCCCGGTGCCCGCCTCGGACTCGTTGTGGGTGTT
GTCCTGGGGGTTCTGGGCGTGTTTCTGGGCCGCTTCCGTCTGGCG


Right flanking sequence: Indices 24068 -- 24567
GTCTCACGCCGGGCCTCCTCCACCTGGCGCTCGAGCTCCGCCACCCGGGCCGCAAGCTCCAGGTC
GGCGGCGCGGGCGTCTAGGGTTTCTTTGTGGGTGGCAATGGTGTGCTGGTGGTCGTCGATGGTGC
GCTGGTGGGTGTCTATGGTGCGCTGGTGGGCCTCGGCGGTGTGCTGGTACTCGGTGGCGCGGGCC
TCCTCCTCGCGGAGACGCTCCTCCGCGGCGCTGGCCCTCGCCTCCTCCTCCCGCGCCCGTTCCTC
CGCCGCGCGTGCCCTCTCCTCCACCTCCCTCACCCGGGCCTCTTCCTCCTTCACGCGCTCCTCCA
TCTCCCGCACGCGCTCCTCCATCTCCCCCAGCCCGTCCCCACTCGCACCGACCCCATCCCCCTCC
CCGCCCCGCTTCAACGCCTCGATCTCCCGCACGTAAAACTCCTCGTTCTCCTGGTGGGACGCCGT
CATCGCCTCGACGCTCAGCCGCCACTCCTCACGTGCCCGCTCAAA



Found at i:24227 original size:21 final size:21

Alignment explanation


    Indices: 24160--24227  Score: 84
    Period size: 21  Copynumber: 3.2  Consensus size: 21

      24150 GGGTTTCTTT

                   *        *    
      24160 GTGGGTGGCAATGGTGTGCTG
          1 GTGGGTGTCAATGGTGCGCTG

                      *           
      24181 GT-GGTCGTCGATGGTGCGCTG
          1 GTGGGT-GTCAATGGTGCGCTG

                     *           
      24202 GTGGGTGTCTATGGTGCGCTG
          1 GTGGGTGTCAATGGTGCGCTG

                 
      24223 GTGGG
          1 GTGGG

      24228 CCTCGGCGGT


Statistics
Matches: 41,  Mismatches: 4, Indels: 4
        0.84            0.08        0.08

Matches are distributed among these distances:
  20    3  0.07
  21   35  0.85
  22    3  0.07

ACGTcount: A:0.06, C:0.13, G:0.51, T:0.29


Consensus pattern (21 bp):   
GTGGGTGTCAATGGTGCGCTG

Left flanking sequence: Indices 23660 -- 24159
TTCTTGGCGAGCAGGTCGGTGCTGTCCATGGCCCCCGAGAGGCCCCCGAGCTCCTTCTCCTCCTT
GAACATCTTGTTCTCCTTGGCGAGCTTGGCCATCTGCTTCTGGAGCTGCTCCACGAGCGTCAGCT
GGTCCGCCTCCGCCATCGCCTCCTTGATGGCGATGTTCTCGCGCGTGAGCAGCTTGATCTTGCCC
TCCAAGTCGTCGAGCTTGTCCGGGTCGGACCCGCCCTCGGCGAGGAGCTGTTTGAGCAGCCGGTT
CTTTTCCTTGAGCTCGACGAGCTCGGAGCTGGGCCGCCCGTTGAGCCCGGTGCCCGCCTCGGACT
CGTTGTGGGTGTTGTCCTGGGGGTTCTGGGCGTGTTTCTGGGCCGCTTCCGTCTGGCGCCGGGCC
TCCTCCCGGGCCTCCTCCGTCTCACGCCGGGCCTCCTCCACCTGGCGCTCGAGCTCCGCCACCCG
GGCCGCAAGCTCCAGGTCGGCGGCGCGGGCGTCTAGGGTTTCTTT


Right flanking sequence: Indices 24228 -- 24727
CCTCGGCGGTGTGCTGGTACTCGGTGGCGCGGGCCTCCTCCTCGCGGAGACGCTCCTCCGCGGCG
CTGGCCCTCGCCTCCTCCTCCCGCGCCCGTTCCTCCGCCGCGCGTGCCCTCTCCTCCACCTCCCT
CACCCGGGCCTCTTCCTCCTTCACGCGCTCCTCCATCTCCCGCACGCGCTCCTCCATCTCCCCCA
GCCCGTCCCCACTCGCACCGACCCCATCCCCCTCCCCGCCCCGCTTCAACGCCTCGATCTCCCGC
ACGTAAAACTCCTCGTTCTCCTGGTGGGACGCCGTCATCGCCTCGACGCTCAGCCGCCACTCCTC
ACGTGCCCGCTCAAACTCCGCCTTGGTGCGGTCGGCGCGGGCGTTGGCCTCCGCCACCTGGGCCT
CGTACTGCTCCAACAACGGGTGCAACTCGTCCACGGTGGCGCGGAGCTCGCCCAAAATCGCCTCC
TTGTCCGCCAACTGGCGCTCGGTGGCGGCGCACTTGCCCTTGAGC



Found at i:24244 original size:42 final size:42

Alignment explanation


    Indices: 24160--24245  Score: 100
    Period size: 42  Copynumber: 2.0  Consensus size: 42

      24150 GGGTTTCTTT

                            *        * *    *         
      24160 GTGGGTGGCAATGGTGTGCTGGTGGTCGTCGATGGTGCGCTG
          1 GTGGGTGGCAATGGTGCGCTGGTGGGCCTCGACGGTGCGCTG

                   * *                     *     *    
      24202 GTGGGTGTCTATGGTGCGCTGGTGGGCCTCGGCGGTGTGCTG
          1 GTGGGTGGCAATGGTGCGCTGGTGGGCCTCGACGGTGCGCTG

              
      24244 GT
          1 GT

      24246 ACTCGGTGGC


Statistics
Matches: 36,  Mismatches: 8, Indels: 0
        0.82            0.18        0.00

Matches are distributed among these distances:
  42   36  1.00

ACGTcount: A:0.05, C:0.16, G:0.50, T:0.29


Consensus pattern (42 bp):   
GTGGGTGGCAATGGTGCGCTGGTGGGCCTCGACGGTGCGCTG

Left flanking sequence: Indices 23660 -- 24159
TTCTTGGCGAGCAGGTCGGTGCTGTCCATGGCCCCCGAGAGGCCCCCGAGCTCCTTCTCCTCCTT
GAACATCTTGTTCTCCTTGGCGAGCTTGGCCATCTGCTTCTGGAGCTGCTCCACGAGCGTCAGCT
GGTCCGCCTCCGCCATCGCCTCCTTGATGGCGATGTTCTCGCGCGTGAGCAGCTTGATCTTGCCC
TCCAAGTCGTCGAGCTTGTCCGGGTCGGACCCGCCCTCGGCGAGGAGCTGTTTGAGCAGCCGGTT
CTTTTCCTTGAGCTCGACGAGCTCGGAGCTGGGCCGCCCGTTGAGCCCGGTGCCCGCCTCGGACT
CGTTGTGGGTGTTGTCCTGGGGGTTCTGGGCGTGTTTCTGGGCCGCTTCCGTCTGGCGCCGGGCC
TCCTCCCGGGCCTCCTCCGTCTCACGCCGGGCCTCCTCCACCTGGCGCTCGAGCTCCGCCACCCG
GGCCGCAAGCTCCAGGTCGGCGGCGCGGGCGTCTAGGGTTTCTTT


Right flanking sequence: Indices 24246 -- 24745
ACTCGGTGGCGCGGGCCTCCTCCTCGCGGAGACGCTCCTCCGCGGCGCTGGCCCTCGCCTCCTCC
TCCCGCGCCCGTTCCTCCGCCGCGCGTGCCCTCTCCTCCACCTCCCTCACCCGGGCCTCTTCCTC
CTTCACGCGCTCCTCCATCTCCCGCACGCGCTCCTCCATCTCCCCCAGCCCGTCCCCACTCGCAC
CGACCCCATCCCCCTCCCCGCCCCGCTTCAACGCCTCGATCTCCCGCACGTAAAACTCCTCGTTC
TCCTGGTGGGACGCCGTCATCGCCTCGACGCTCAGCCGCCACTCCTCACGTGCCCGCTCAAACTC
CGCCTTGGTGCGGTCGGCGCGGGCGTTGGCCTCCGCCACCTGGGCCTCGTACTGCTCCAACAACG
GGTGCAACTCGTCCACGGTGGCGCGGAGCTCGCCCAAAATCGCCTCCTTGTCCGCCAACTGGCGC
TCGGTGGCGGCGCACTTGCCCTTGAGCTCGGCGATCTCGGCGGCG



Found at i:24397 original size:21 final size:21

Alignment explanation


    Indices: 24379--24419  Score: 82
    Period size: 21  Copynumber: 2.0  Consensus size: 21

      24369 CTTCCTCCTT

                                 
      24379 CACGCGCTCCTCCATCTCCCG
          1 CACGCGCTCCTCCATCTCCCG

                                
      24400 CACGCGCTCCTCCATCTCCC
          1 CACGCGCTCCTCCATCTCCC

      24420 CCAGCCCGTC


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  21   20  1.00

ACGTcount: A:0.10, C:0.59, G:0.12, T:0.20


Consensus pattern (21 bp):   
CACGCGCTCCTCCATCTCCCG

Left flanking sequence: Indices 23879 -- 24378
TCGGACCCGCCCTCGGCGAGGAGCTGTTTGAGCAGCCGGTTCTTTTCCTTGAGCTCGACGAGCTC
GGAGCTGGGCCGCCCGTTGAGCCCGGTGCCCGCCTCGGACTCGTTGTGGGTGTTGTCCTGGGGGT
TCTGGGCGTGTTTCTGGGCCGCTTCCGTCTGGCGCCGGGCCTCCTCCCGGGCCTCCTCCGTCTCA
CGCCGGGCCTCCTCCACCTGGCGCTCGAGCTCCGCCACCCGGGCCGCAAGCTCCAGGTCGGCGGC
GCGGGCGTCTAGGGTTTCTTTGTGGGTGGCAATGGTGTGCTGGTGGTCGTCGATGGTGCGCTGGT
GGGTGTCTATGGTGCGCTGGTGGGCCTCGGCGGTGTGCTGGTACTCGGTGGCGCGGGCCTCCTCC
TCGCGGAGACGCTCCTCCGCGGCGCTGGCCCTCGCCTCCTCCTCCCGCGCCCGTTCCTCCGCCGC
GCGTGCCCTCTCCTCCACCTCCCTCACCCGGGCCTCTTCCTCCTT


Right flanking sequence: Indices 24420 -- 24919
CCAGCCCGTCCCCACTCGCACCGACCCCATCCCCCTCCCCGCCCCGCTTCAACGCCTCGATCTCC
CGCACGTAAAACTCCTCGTTCTCCTGGTGGGACGCCGTCATCGCCTCGACGCTCAGCCGCCACTC
CTCACGTGCCCGCTCAAACTCCGCCTTGGTGCGGTCGGCGCGGGCGTTGGCCTCCGCCACCTGGG
CCTCGTACTGCTCCAACAACGGGTGCAACTCGTCCACGGTGGCGCGGAGCTCGCCCAAAATCGCC
TCCTTGTCCGCCAACTGGCGCTCGGTGGCGGCGCACTTGCCCTTGAGCTCGGCGATCTCGGCGGC
GTAGAGCTCGTGCTCGGCGATGGTGGGGCTGGCGCGGGCCTCCGACGGCGGGCGGAGCGCCGGCA
GCCGGCGCAGCGGGGGGCGCGAGTCGCTGAGCTGGCGCGACCGCGGGCGCAGCCCGGAGGAGGGG
GCGGAGGAGGGGGTGGAGGAGAGTGCGGCGGGTGCAGCCCCTGGT



Found at i:24881 original size:12 final size:12

Alignment explanation


    Indices: 24864--24895  Score: 55
    Period size: 12  Copynumber: 2.7  Consensus size: 12

      24854 GGGCGCAGCC

                        
      24864 CGGAGGAGGGGG
          1 CGGAGGAGGGGG

                        
      24876 CGGAGGAGGGGG
          1 CGGAGGAGGGGG

            *       
      24888 TGGAGGAG
          1 CGGAGGAG

      24896 AGTGCGGCGG


Statistics
Matches: 19,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  12   19  1.00

ACGTcount: A:0.19, C:0.06, G:0.72, T:0.03


Consensus pattern (12 bp):   
CGGAGGAGGGGG

Left flanking sequence: Indices 24364 -- 24863
GGCCTCTTCCTCCTTCACGCGCTCCTCCATCTCCCGCACGCGCTCCTCCATCTCCCCCAGCCCGT
CCCCACTCGCACCGACCCCATCCCCCTCCCCGCCCCGCTTCAACGCCTCGATCTCCCGCACGTAA
AACTCCTCGTTCTCCTGGTGGGACGCCGTCATCGCCTCGACGCTCAGCCGCCACTCCTCACGTGC
CCGCTCAAACTCCGCCTTGGTGCGGTCGGCGCGGGCGTTGGCCTCCGCCACCTGGGCCTCGTACT
GCTCCAACAACGGGTGCAACTCGTCCACGGTGGCGCGGAGCTCGCCCAAAATCGCCTCCTTGTCC
GCCAACTGGCGCTCGGTGGCGGCGCACTTGCCCTTGAGCTCGGCGATCTCGGCGGCGTAGAGCTC
GTGCTCGGCGATGGTGGGGCTGGCGCGGGCCTCCGACGGCGGGCGGAGCGCCGGCAGCCGGCGCA
GCGGGGGGCGCGAGTCGCTGAGCTGGCGCGACCGCGGGCGCAGCC


Right flanking sequence: Indices 24896 -- 25395
AGTGCGGCGGGTGCAGCCCCTGGTTTGGCACCAGCACCACCGGTGGTGGCACCGGCTCCCTTCAA
TCCTAGACTGCTCCCGCTCGACAACCGCGACCGCGTGGGTTTCGGCGCCGGGATGCCCAGGCTCG
GGGTGGCCACCCCCGGGGAGCCCCTCTTCGGCAACAGGATCTGGGACTCGGCGATGCTGCCGTTG
GGGTTGAGCGCAGGCAACAGCGGGTTCAGCGAGCGGAGGCGGTCCCACGGGAGAAACAACCCCGT
CATCGGCTGGTCCACCTCGAAATACCGGTTGCCGTCAACCATGCCCAGGTTCTTGCCCCGGAGGG
CGGCGATGGGGCCCACCAACTCGAGCCCGCCAAACAACCCCTGTTTGTCGGCGATGGGCCCGTAG
TACTTGAGGATCCCGTGGCCGCGTGTGCCCGGGACGTTGACCTTCTGTCCAATCAACTCCATCGT
GTGCCTGGGTGTGTGTGCGTGGCCTGAAATTTTCGGGTAAACAAT



Found at i:26753 original size:18 final size:18

Alignment explanation


    Indices: 26730--26773  Score: 70
    Period size: 18  Copynumber: 2.4  Consensus size: 18

      26720 CACCTCTTAA

                    *         
      26730 CAATTTGTGACTAGTAAC
          1 CAATTTGTCACTAGTAAC

                           *  
      26748 CAATTTGTCACTAGTGAC
          1 CAATTTGTCACTAGTAAC

                    
      26766 CAATTTGT
          1 CAATTTGT

      26774 AACAACACAT


Statistics
Matches: 24,  Mismatches: 2, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
  18   24  1.00

ACGTcount: A:0.30, C:0.18, G:0.16, T:0.36


Consensus pattern (18 bp):   
CAATTTGTCACTAGTAAC

Left flanking sequence: Indices 26230 -- 26729
GTCCATGCTATGTTTACCAGTTAGCCATTATTAGAATTGATCGGTTAGGTTATTCCGATAAATAA
GGCATAAATAAGGCGTACTTGCTATCCGGTCAAACGAAGTATACATAGTCAATACCCCTGTGACG
TTTCTTTAGTAGAGGATATAGTCAACCAGCGAGTGTGTATACCCTCGTTGCGAATTGTTACGGTC
GGTTGCTACTAAACCTTGGTGGTAGACCCGTGGCACACCGTGTCTTATTCTGAATGTTAGCTACG
GTTACTTGGATCGCTATCATCGTCAATCTTTCAGCCGTTAGATGATCTGATAAGTGTAAGGACCG
ATCACGGACCGATCACCACTTGATACTACGCAAATCCGTCAGAATCCTGGTGAACACGCAAGTGA
CTATTGGCTTCCAGTACCAGCAATCTCCGTGTCACGATCGCGTTCGATGACACCCAGTCTCTGCT
TTTGTGAACTAGCGGAAGTCTGCATCCTGCTAAGACACCTCTTAA


Right flanking sequence: Indices 26774 -- 27273
AACAACACATATCTCCGGTTGTTACGACCATAGTGGTCGTGGGCCTGAACTACCAAAGGGCTTTG
AGCATTGTTCCGTTACAGCTCGTCTGAGCGTACAAAAGCAGACACCCCATTTCACCAGGTTGGCT
AATAACACTCAACAAAAGCACCGAGCGTTCTGGCATGATTACACGGGAATTCGTCCTTAGAGCAC
GTACCCCGACTAAACTTCCCCTACTGCCACAAACCACAAAACTCAGGATCCTTACAAATATTGCT
TGCAAACCCTAGGATCGTATCACCGCCTAATCCTAATCACCTAAGATCTCTTCGCTAAGCATTAC
TTATCACCGCTTACCCCACCGGTGCCCCACTTCGCTCCCCTCGTTTCATGTGACCGGATCCCAGT
GGGACCCGAGCCGACAACGGCGCCCCCGCGATCGCGGTTGATCCTTGCCATTGTGGCCGCAGCTG
ACAAATCCCCCGTTTTCCTGCTGGTGGCTGCCCTATAAGGCTTGA



Found at i:29153 original size:14 final size:14

Alignment explanation


    Indices: 29134--29183  Score: 75
    Period size: 14  Copynumber: 3.6  Consensus size: 14

      29124 ACGAAAAGAA

                          
      29134 CTCACCTCAAGGTT
          1 CTCACCTCAAGGTT

                          
      29148 CTCACCTCAAGGTT
          1 CTCACCTCAAGGTT

                         * 
      29162 CTCACCAT-AAGGAT
          1 CTCACC-TCAAGGTT

                    
      29176 CTCACCTC
          1 CTCACCTC

      29184 CGTAGCCAGC


Statistics
Matches: 33,  Mismatches: 1, Indels: 4
        0.87            0.03        0.11

Matches are distributed among these distances:
  13    1  0.03
  14   31  0.94
  15    1  0.03

ACGTcount: A:0.24, C:0.38, G:0.12, T:0.26


Consensus pattern (14 bp):   
CTCACCTCAAGGTT

Left flanking sequence: Indices 28634 -- 29133
ACCCCATCGTGCCCGGAAACAGTCGCGATGCCACTAAGGACACCACTATCCCCCGTGGAGGCGGT
CCCAACGGCGACCAGCCGGTGTTTGTCCCCAAGGGCCAGACGGTGTTCTACAACGTGTTTGCCAT
GCACCGCAGCGAGGCTCTCTACGGGAAGGACGCCCACGAGTGGCGGCCCGAGCGGTGGTTGGAGC
CCGAATCTCTGCGTCTTGGCTGGGCTTATTTGCCGTTTAACGGGGGACCCCGTATCTGTCTCGGC
CAGCAGTTCGCGTTGACCGAGATGTCGTACGTGATTGTGAGGCTCTTGCAGCTCTTTGACAAGAT
CGAGGACTACAACGACGACCGCACCCGGTTGGCCACTCACTTGACGATGTCTTTGATGGACGGGT
GCAACGTCGCTCTCCAAGCGTAGTGCTAATTTGTGCCCTCCAGACGTAGTACTTACAGGATTTAT
AACCAATTGTGTTCATGAAACTAAATAAACAAAGAACGAAAAGAA


Right flanking sequence: Indices 29184 -- 29683
CGTAGCCAGCAGTGTTACTTGACGCTACCAAGCGAGCGGCTGCAACTTTGACACATTTGACGTGC
TTTTACGACGCTTACGCTATTCAATCCTTCTTATTAAACAATTATTGTCCCAAGAGATCGCCCAT
GACTTTTTCCGAGGTCAACTCGTCCAAAACCTTTTTAGTCCGCGACTGGGACGGCGGTTTCGAAA
TGCTATGGGGTCCCTGGCCCTGGTAGCCACCAGGACATATATTACGCTCGCGGTGCTTTTTCAAC
GCATCCAACCGAGCAAACTCTTTGCCGCAAGGACACTTGCAGTGCCGGGCCTCCAAGTGGCCCTT
GACGTGCCGGTTCAAGTCGTGCTGGCGCACAAACTTCTTCGGGCAGTACGAACACGCGAACGGGC
GGTCGCACAAGTGGGTCTGGATGTGTGACCGCACGTTGTAACGCCTGGTGAACTTCTTCCCGCAC
TCCTGGTAGGTACACGTGTAGGTTTTCAGCTCGTCGGGGCCCGTC



Found at i:31803 original size:19 final size:19

Alignment explanation


    Indices: 31781--31863  Score: 114
    Period size: 19  Copynumber: 4.4  Consensus size: 19

      31771 TTTGTCCACC

                              *
      31781 TCCTTTTCAATTGCCTTAG
          1 TCCTTTTCAATTGCCTTAA

                 *             
      31800 TCCTTCTCAATTGCCTTAA
          1 TCCTTTTCAATTGCCTTAA

                  *            
      31819 TCCTTTCCAATTGCCTTAA
          1 TCCTTTTCAATTGCCTTAA

                     *          
      31838 TCCTTTTCACTT-CCGTTAA
          1 TCCTTTTCAATTGCC-TTAA

                   
      31857 TCCTTTT
          1 TCCTTTT

      31864 GAACTGCCCT


Statistics
Matches: 57,  Mismatches: 6, Indels: 2
        0.88            0.09        0.03

Matches are distributed among these distances:
  18    2  0.04
  19   55  0.96

ACGTcount: A:0.17, C:0.30, G:0.06, T:0.47


Consensus pattern (19 bp):   
TCCTTTTCAATTGCCTTAA

Left flanking sequence: Indices 31281 -- 31780
GTAAACTGCCGCCCGCTACACCAGCCCGCGACATTGTGTGCTTCTGTGCCGCCAGATGCTCGGGA
TACCGGGATCCTTCTCCCACGTTGACCGCAGGTACCTGCATGACGCACCCAGTTTAGCCAAACGG
GAACAGGCTCATCGCCGTCATCGGGGAAGATGGGAGGTGGAGACACTGGGGACGAGTGTGTGGGG
AGGTGGAGTATATAGGGAGATTGAGTGTTTACTTGAGTTTTATTTCGAGTCACAAATTGATACCA
GGGTCTGTTTACAAAAAGTGTCGACAACCCTGATTGTGCCTATCAACGGTGCCACCACAATAGCC
GTATCTGTGGGTTCCGGATCCGGCGTAGTCGCGACGGTTTTGACTCGTGCGATGAGCACCAATAC
GGTGGTGAGAGTGTGAAAAAAGACATACGAGGTCGGATCAGGCACATAACCCTGTCTTTGAACGA
AACACCCCGGTTCAATCCCTTCCACCTCCTTTTCATTTGTCCACC


Right flanking sequence: Indices 31864 -- 32363
GAACTGCCCTAGTCTTTGTAAACCTTGGTTTTGATCCCTGCGAGACGATCAACTATCATGGACTA
CAGCCAGTGGTTCAGCGACCCGGAATCAGAGACGGAGTGGCCAGACAACGAGTTGGCGGCCTCGT
CCAAGGTGCTCCTGCTGTTCTACGACTTTGGCGACTGGCAGCGCGACCAGGTGCTCAAACCCAAG
CTCTTGAAGTGGCACGCGATCTCGGGCCGCCAACGCCAGTTGCTCCCGTGGTTCGAGCCCCATTT
GGACCACTTGGACGAGTGTGTGACCGGGAACGAGCATTTCTGCCGCATTGTAGCAGTGGCCGGGG
CCCAGCAGTGGGGTGTGCCCATGCACCCCTCGGACCCGCTGGCCGGGTGGGTGGTGGCTCTGAGA
GCAGAGTACGACAAGACGAGGTCCACTCTTCTCCAGTTGGCCCGGGAGTGGCTGGCTGAGGGGCG
GGCTGAGCGAGACCAGGCGTTTGGCCCGATTTTGGCAGCACTTGA



Found at i:31823 original size:38 final size:38

Alignment explanation


    Indices: 31781--31877  Score: 115
    Period size: 38  Copynumber: 2.6  Consensus size: 38

      31771 TTTGTCCACC

                                                   
      31781 TCCTTTTCAATTGCCTTAGTCCTTCTCAATTGCC-TTAA
          1 TCCTTTTCAATTGCCTTAGTCCTTCTCAATT-CCGTTAA

                  *           *     *   *         
      31819 TCCTTTCCAATTGCCTTAATCCTTTTCACTTCCGTTAA
          1 TCCTTTTCAATTGCCTTAGTCCTTCTCAATTCCGTTAA

                   *  *    *     
      31857 TCCTTTTGAACTGCCCTAGTC
          1 TCCTTTTCAATTGCCTTAGTC

      31878 TTTGTAAACC


Statistics
Matches: 49,  Mismatches: 9, Indels: 2
        0.82            0.15        0.03

Matches are distributed among these distances:
  37    2  0.04
  38   47  0.96

ACGTcount: A:0.18, C:0.31, G:0.08, T:0.43


Consensus pattern (38 bp):   
TCCTTTTCAATTGCCTTAGTCCTTCTCAATTCCGTTAA

Left flanking sequence: Indices 31281 -- 31780
GTAAACTGCCGCCCGCTACACCAGCCCGCGACATTGTGTGCTTCTGTGCCGCCAGATGCTCGGGA
TACCGGGATCCTTCTCCCACGTTGACCGCAGGTACCTGCATGACGCACCCAGTTTAGCCAAACGG
GAACAGGCTCATCGCCGTCATCGGGGAAGATGGGAGGTGGAGACACTGGGGACGAGTGTGTGGGG
AGGTGGAGTATATAGGGAGATTGAGTGTTTACTTGAGTTTTATTTCGAGTCACAAATTGATACCA
GGGTCTGTTTACAAAAAGTGTCGACAACCCTGATTGTGCCTATCAACGGTGCCACCACAATAGCC
GTATCTGTGGGTTCCGGATCCGGCGTAGTCGCGACGGTTTTGACTCGTGCGATGAGCACCAATAC
GGTGGTGAGAGTGTGAAAAAAGACATACGAGGTCGGATCAGGCACATAACCCTGTCTTTGAACGA
AACACCCCGGTTCAATCCCTTCCACCTCCTTTTCATTTGTCCACC


Right flanking sequence: Indices 31878 -- 32377
TTTGTAAACCTTGGTTTTGATCCCTGCGAGACGATCAACTATCATGGACTACAGCCAGTGGTTCA
GCGACCCGGAATCAGAGACGGAGTGGCCAGACAACGAGTTGGCGGCCTCGTCCAAGGTGCTCCTG
CTGTTCTACGACTTTGGCGACTGGCAGCGCGACCAGGTGCTCAAACCCAAGCTCTTGAAGTGGCA
CGCGATCTCGGGCCGCCAACGCCAGTTGCTCCCGTGGTTCGAGCCCCATTTGGACCACTTGGACG
AGTGTGTGACCGGGAACGAGCATTTCTGCCGCATTGTAGCAGTGGCCGGGGCCCAGCAGTGGGGT
GTGCCCATGCACCCCTCGGACCCGCTGGCCGGGTGGGTGGTGGCTCTGAGAGCAGAGTACGACAA
GACGAGGTCCACTCTTCTCCAGTTGGCCCGGGAGTGGCTGGCTGAGGGGCGGGCTGAGCGAGACC
AGGCGTTTGGCCCGATTTTGGCAGCACTTGAACGGCTCTATCCCG



Found at i:33265 original size:21 final size:21

Alignment explanation


    Indices: 33240--33283  Score: 52
    Period size: 21  Copynumber: 2.1  Consensus size: 21

      33230 TATGATCACT

                             *   
      33240 CTCATAACAGATCACTCGAAA
          1 CTCATAACAGATCACTCAAAA

                 *  **           
      33261 CTCATCACTTATCACTCAAAA
          1 CTCATAACAGATCACTCAAAA

              
      33282 CT
          1 CT

      33284 GATCACTCAG


Statistics
Matches: 19,  Mismatches: 4, Indels: 0
        0.83            0.17        0.00

Matches are distributed among these distances:
  21   19  1.00

ACGTcount: A:0.39, C:0.32, G:0.05, T:0.25


Consensus pattern (21 bp):   
CTCATAACAGATCACTCAAAA

Left flanking sequence: Indices 32740 -- 33239
CAGGCGGCCCAGTTCCGCCAGGACAACAAGGAGAAGTTTGACGTCGTGGCTACGTGCTTCTTTTT
GGACACTGCCAGCAACATCATCGACTACTTAGATACGATATACCACACGCTCAAGCCCGACGGTC
GCTGGATCAACTTTGGCCCGTTGCTCTGGCACTTTGAGGACGACAAGAACGCTAAGGTTAATGTG
TTTGACAAGCCTGAGCCCTACGGGGGCTTGGAGTTGGCGCGGTCGGAGCTCTTTGACTTGTGTGA
AGCAGTGGGGTTCGAGTTTGAGCAACAGGAGCACGAGATCGGGACGTCGTACTCGGGCGACCCCC
AGTCGTTGGGCCAGTTTGCATTTAAGTGTGAGTTCTGGGTAGCGAAGAAGAGAGAGAGGCTGGGG
AACGGGCAAAGTGACCCCGAGTGATTAAAAATATGTGGGATAGCATCAAGCATGGTTATAGTGTT
GGCCGAAAGTGGAAGTGAGAAGACAACAAGGGACCTATGATCACT


Right flanking sequence: Indices 33284 -- 33783
GATCACTCAGACCTATCGCTCAAAACTAATCTGTCTCAAAACTACTCTCAACCCTTGAGAGGGTC
TGGAAGTGACCATCCTGAAGGTAAGTCTGAGGTTGATAACCAACAGGATTGGCTAACAGGATTGG
CTCTATTGTGTATGATTAAATCGGATTGGCTCTATTCTGTATTTAGATTCACTTACATCCATAAA
CGGCTATTCATTACACGTATAGCCTCAGTGCTATCGCCTCAGTGCTATCGCCTCAGTGCTGCACC
AGCGACTCCAACCGCTCGTTGACGACCTTGTCGTCGTCGGTAAGCGCCCCCGCCAACTTCAACGT
GTCGCGGGTGTTCTCCACCACCGTCTTCCAGTCCACGTCCAAGCTCGGGTTGAACTCCACCGTCT
TCAACCACTCCTGGGCGTCCTCCTTCGAGTAGTCCAAGTTCTCGGCAATCCACGCCACCGCCTCG
TCGTGGTGGGCGTCGAAGTAGGCGATCCCCTGCTTCACCCCGGCC



Found at i:33288 original size:21 final size:21

Alignment explanation


    Indices: 33250--33290  Score: 64
    Period size: 21  Copynumber: 2.0  Consensus size: 21

      33240 CTCATAACAG

                   *             
      33250 ATCACTCGAAACTCATCACTT
          1 ATCACTCAAAACTCATCACTT

                         *      
      33271 ATCACTCAAAACTGATCACT
          1 ATCACTCAAAACTCATCACT

      33291 CAGACCTATC


Statistics
Matches: 18,  Mismatches: 2, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  21   18  1.00

ACGTcount: A:0.37, C:0.32, G:0.05, T:0.27


Consensus pattern (21 bp):   
ATCACTCAAAACTCATCACTT

Left flanking sequence: Indices 32750 -- 33249
AGTTCCGCCAGGACAACAAGGAGAAGTTTGACGTCGTGGCTACGTGCTTCTTTTTGGACACTGCC
AGCAACATCATCGACTACTTAGATACGATATACCACACGCTCAAGCCCGACGGTCGCTGGATCAA
CTTTGGCCCGTTGCTCTGGCACTTTGAGGACGACAAGAACGCTAAGGTTAATGTGTTTGACAAGC
CTGAGCCCTACGGGGGCTTGGAGTTGGCGCGGTCGGAGCTCTTTGACTTGTGTGAAGCAGTGGGG
TTCGAGTTTGAGCAACAGGAGCACGAGATCGGGACGTCGTACTCGGGCGACCCCCAGTCGTTGGG
CCAGTTTGCATTTAAGTGTGAGTTCTGGGTAGCGAAGAAGAGAGAGAGGCTGGGGAACGGGCAAA
GTGACCCCGAGTGATTAAAAATATGTGGGATAGCATCAAGCATGGTTATAGTGTTGGCCGAAAGT
GGAAGTGAGAAGACAACAAGGGACCTATGATCACTCTCATAACAG


Right flanking sequence: Indices 33291 -- 33790
CAGACCTATCGCTCAAAACTAATCTGTCTCAAAACTACTCTCAACCCTTGAGAGGGTCTGGAAGT
GACCATCCTGAAGGTAAGTCTGAGGTTGATAACCAACAGGATTGGCTAACAGGATTGGCTCTATT
GTGTATGATTAAATCGGATTGGCTCTATTCTGTATTTAGATTCACTTACATCCATAAACGGCTAT
TCATTACACGTATAGCCTCAGTGCTATCGCCTCAGTGCTATCGCCTCAGTGCTGCACCAGCGACT
CCAACCGCTCGTTGACGACCTTGTCGTCGTCGGTAAGCGCCCCCGCCAACTTCAACGTGTCGCGG
GTGTTCTCCACCACCGTCTTCCAGTCCACGTCCAAGCTCGGGTTGAACTCCACCGTCTTCAACCA
CTCCTGGGCGTCCTCCTTCGAGTAGTCCAAGTTCTCGGCAATCCACGCCACCGCCTCGTCGTGGT
GGGCGTCGAAGTAGGCGATCCCCTGCTTCACCCCGGCCACGAACG



Found at i:33408 original size:13 final size:13

Alignment explanation


    Indices: 33390--33415  Score: 52
    Period size: 13  Copynumber: 2.0  Consensus size: 13

      33380 GTTGATAACC

                         
      33390 AACAGGATTGGCT
          1 AACAGGATTGGCT

                         
      33403 AACAGGATTGGCT
          1 AACAGGATTGGCT

      33416 CTATTGTGTA


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   13  1.00

ACGTcount: A:0.31, C:0.15, G:0.31, T:0.23


Consensus pattern (13 bp):   
AACAGGATTGGCT

Left flanking sequence: Indices 32890 -- 33389
TTGCTCTGGCACTTTGAGGACGACAAGAACGCTAAGGTTAATGTGTTTGACAAGCCTGAGCCCTA
CGGGGGCTTGGAGTTGGCGCGGTCGGAGCTCTTTGACTTGTGTGAAGCAGTGGGGTTCGAGTTTG
AGCAACAGGAGCACGAGATCGGGACGTCGTACTCGGGCGACCCCCAGTCGTTGGGCCAGTTTGCA
TTTAAGTGTGAGTTCTGGGTAGCGAAGAAGAGAGAGAGGCTGGGGAACGGGCAAAGTGACCCCGA
GTGATTAAAAATATGTGGGATAGCATCAAGCATGGTTATAGTGTTGGCCGAAAGTGGAAGTGAGA
AGACAACAAGGGACCTATGATCACTCTCATAACAGATCACTCGAAACTCATCACTTATCACTCAA
AACTGATCACTCAGACCTATCGCTCAAAACTAATCTGTCTCAAAACTACTCTCAACCCTTGAGAG
GGTCTGGAAGTGACCATCCTGAAGGTAAGTCTGAGGTTGATAACC


Right flanking sequence: Indices 33416 -- 33915
CTATTGTGTATGATTAAATCGGATTGGCTCTATTCTGTATTTAGATTCACTTACATCCATAAACG
GCTATTCATTACACGTATAGCCTCAGTGCTATCGCCTCAGTGCTATCGCCTCAGTGCTGCACCAG
CGACTCCAACCGCTCGTTGACGACCTTGTCGTCGTCGGTAAGCGCCCCCGCCAACTTCAACGTGT
CGCGGGTGTTCTCCACCACCGTCTTCCAGTCCACGTCCAAGCTCGGGTTGAACTCCACCGTCTTC
AACCACTCCTGGGCGTCCTCCTTCGAGTAGTCCAAGTTCTCGGCAATCCACGCCACCGCCTCGTC
GTGGTGGGCGTCGAAGTAGGCGATCCCCTGCTTCACCCCGGCCACGAACGCATCCACGGCCTCCT
GCTGCTCCCCAAGCGCCTTCTTGGACGCAGTGATCACCCACGACGGCCAGGGGGTGTAGATGTCC
CCGATCCGCTTGATCTCCCCGTTGTCGTAGTACTTCTTCAGGGTG



Found at i:33519 original size:14 final size:14

Alignment explanation


    Indices: 33500--33538  Score: 78
    Period size: 14  Copynumber: 2.8  Consensus size: 14

      33490 TACACGTATA

                          
      33500 GCCTCAGTGCTATC
          1 GCCTCAGTGCTATC

                          
      33514 GCCTCAGTGCTATC
          1 GCCTCAGTGCTATC

                       
      33528 GCCTCAGTGCT
          1 GCCTCAGTGCT

      33539 GCACCAGCGA


Statistics
Matches: 25,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  14   25  1.00

ACGTcount: A:0.13, C:0.36, G:0.23, T:0.28


Consensus pattern (14 bp):   
GCCTCAGTGCTATC

Left flanking sequence: Indices 33000 -- 33499
AGCAGTGGGGTTCGAGTTTGAGCAACAGGAGCACGAGATCGGGACGTCGTACTCGGGCGACCCCC
AGTCGTTGGGCCAGTTTGCATTTAAGTGTGAGTTCTGGGTAGCGAAGAAGAGAGAGAGGCTGGGG
AACGGGCAAAGTGACCCCGAGTGATTAAAAATATGTGGGATAGCATCAAGCATGGTTATAGTGTT
GGCCGAAAGTGGAAGTGAGAAGACAACAAGGGACCTATGATCACTCTCATAACAGATCACTCGAA
ACTCATCACTTATCACTCAAAACTGATCACTCAGACCTATCGCTCAAAACTAATCTGTCTCAAAA
CTACTCTCAACCCTTGAGAGGGTCTGGAAGTGACCATCCTGAAGGTAAGTCTGAGGTTGATAACC
AACAGGATTGGCTAACAGGATTGGCTCTATTGTGTATGATTAAATCGGATTGGCTCTATTCTGTA
TTTAGATTCACTTACATCCATAAACGGCTATTCATTACACGTATA


Right flanking sequence: Indices 33539 -- 34038
GCACCAGCGACTCCAACCGCTCGTTGACGACCTTGTCGTCGTCGGTAAGCGCCCCCGCCAACTTC
AACGTGTCGCGGGTGTTCTCCACCACCGTCTTCCAGTCCACGTCCAAGCTCGGGTTGAACTCCAC
CGTCTTCAACCACTCCTGGGCGTCCTCCTTCGAGTAGTCCAAGTTCTCGGCAATCCACGCCACCG
CCTCGTCGTGGTGGGCGTCGAAGTAGGCGATCCCCTGCTTCACCCCGGCCACGAACGCATCCACG
GCCTCCTGCTGCTCCCCAAGCGCCTTCTTGGACGCAGTGATCACCCACGACGGCCAGGGGGTGTA
GATGTCCCCGATCCGCTTGATCTCCCCGTTGTCGTAGTACTTCTTCAGGGTGAAGTGCTCCCACA
TGAAAAAGTCAGCAGCCCCGGAGTTGACCCCCTCGCGAAGGTTCTTGAAGTTGTCCAACACCTTG
AACTCAAACGGCTTCTTGAAGTGGAGCTGGTGGGCCAACACAAAG



Found at i:34524 original size:9 final size:9

Alignment explanation


    Indices: 34507--34555  Score: 62
    Period size: 9  Copynumber: 5.4  Consensus size: 9

      34497 GGGTGGATGC

                *    
      34507 ATTGTGTGT
          1 ATTGGGTGT

                     
      34516 ATTGGGTGT
          1 ATTGGGTGT

                    *
      34525 ATTGGGTGC
          1 ATTGGGTGT

                    *
      34534 ATTGGGTGC
          1 ATTGGGTGT

                 *   
      34543 ATTGGATGT
          1 ATTGGGTGT

                
      34552 ATTG
          1 ATTG

      34556 ATTGCATTGG


Statistics
Matches: 36,  Mismatches: 4, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
   9   36  1.00

ACGTcount: A:0.14, C:0.04, G:0.39, T:0.43


Consensus pattern (9 bp):   
ATTGGGTGT

Left flanking sequence: Indices 34007 -- 34506
TCTTGAAGTGGAGCTGGTGGGCCAACACAAAGCTCATCACGTACGAGCCCAGCCCGATCCGCGAC
ACCCCGACGGTGGACCCGTCGAGCTCGCTCTTGTCCTGGAGGCCCAGCTGGGCCCCGGCCGAGAT
GGCCCAGCAAAGGGGCAGCTTGACGTAGGTGCCAATGACCTTGTTGGCGGTGTTGCCCTTGGCAA
TGTCGGAAATGAACCCCTCGGTCAACCCAATGGCAATGTCGACCTCGTCGTCGTTGAGCAACTTG
ACCAACCGCCCGGTGCCCTCGATCACGGGGACAAACTTGACCTCGGTCTTGAAGAACTGGTGCTT
GAGAGCAAGGAAGAGTGGCAGAGCAAAGTGCTCGGGGATGTAGGCGACTCTCAACATGGTGCGTG
CGAGTGAAAAATGGATTGGTGTGTGGTTGTGTGGGGAACGGAATGAAGGTGAAAAAAAGGGTGGT
GCATGGAATGTGGGTGAATGGGATGGTTAGTGGTGGGGTGGATGC


Right flanking sequence: Indices 34556 -- 35055
ATTGCATTGGATATAATGATCGCATGGGGTGTAGTAAGGCTAGTAGAGTGGATCGCAGTGATCTT
AGTGATAAGGTCTTCTGAACTAAAGTTGATCAAAACAGAAAAAGGGATGAAGAATTGACCAACGT
AGAGTGGATCCCATTGGGAATTTTGTCAATTGGTCAATTGAGTGGAGATTCTACGATCTGGTCAC
CTCGTTACGGTCGTCACGCCAATTTCGCACTGCTACCCCTATTGGCGAATGTCTCGTCTAAACGC
TGTGGCTGACCACACTCAAAGGCGCCTCTCGTAATACTTCGGATCCTTCTCGGACCCGTCTTCGA
CAAAACTGTACTCTCGTAACACGTCTGGTAACCTCAAAACCGTCAATACCCATCAATCACCATCA
ACACCCACCTATCACCATCACACCCACTCACCACATTCATTCTCCACTCATCTAACCACCATACT
CACCCCTTATTATACTACTTCTCCCACTCTACACCCCCATCTCTG



Found at i:34534 original size:27 final size:27

Alignment explanation


    Indices: 34504--34565  Score: 79
    Period size: 27  Copynumber: 2.3  Consensus size: 27

      34494 GTGGGGTGGA

                   *   *     *       * 
      34504 TGCATTGTGTGTATTGGGTGTATTGGG
          1 TGCATTGGGTGCATTGGATGTATTGAG

                                      *
      34531 TGCATTGGGTGCATTGGATGTATTGAT
          1 TGCATTGGGTGCATTGGATGTATTGAG

                    
      34558 TGCATTGG
          1 TGCATTGG

      34566 ATATAATGAT


Statistics
Matches: 30,  Mismatches: 5, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
  27   30  1.00

ACGTcount: A:0.15, C:0.06, G:0.37, T:0.42


Consensus pattern (27 bp):   
TGCATTGGGTGCATTGGATGTATTGAG

Left flanking sequence: Indices 34004 -- 34503
GCTTCTTGAAGTGGAGCTGGTGGGCCAACACAAAGCTCATCACGTACGAGCCCAGCCCGATCCGC
GACACCCCGACGGTGGACCCGTCGAGCTCGCTCTTGTCCTGGAGGCCCAGCTGGGCCCCGGCCGA
GATGGCCCAGCAAAGGGGCAGCTTGACGTAGGTGCCAATGACCTTGTTGGCGGTGTTGCCCTTGG
CAATGTCGGAAATGAACCCCTCGGTCAACCCAATGGCAATGTCGACCTCGTCGTCGTTGAGCAAC
TTGACCAACCGCCCGGTGCCCTCGATCACGGGGACAAACTTGACCTCGGTCTTGAAGAACTGGTG
CTTGAGAGCAAGGAAGAGTGGCAGAGCAAAGTGCTCGGGGATGTAGGCGACTCTCAACATGGTGC
GTGCGAGTGAAAAATGGATTGGTGTGTGGTTGTGTGGGGAACGGAATGAAGGTGAAAAAAAGGGT
GGTGCATGGAATGTGGGTGAATGGGATGGTTAGTGGTGGGGTGGA


Right flanking sequence: Indices 34566 -- 35065
ATATAATGATCGCATGGGGTGTAGTAAGGCTAGTAGAGTGGATCGCAGTGATCTTAGTGATAAGG
TCTTCTGAACTAAAGTTGATCAAAACAGAAAAAGGGATGAAGAATTGACCAACGTAGAGTGGATC
CCATTGGGAATTTTGTCAATTGGTCAATTGAGTGGAGATTCTACGATCTGGTCACCTCGTTACGG
TCGTCACGCCAATTTCGCACTGCTACCCCTATTGGCGAATGTCTCGTCTAAACGCTGTGGCTGAC
CACACTCAAAGGCGCCTCTCGTAATACTTCGGATCCTTCTCGGACCCGTCTTCGACAAAACTGTA
CTCTCGTAACACGTCTGGTAACCTCAAAACCGTCAATACCCATCAATCACCATCAACACCCACCT
ATCACCATCACACCCACTCACCACATTCATTCTCCACTCATCTAACCACCATACTCACCCCTTAT
TATACTACTTCTCCCACTCTACACCCCCATCTCTGGCTCTCTGGC



Found at i:34537 original size:18 final size:18

Alignment explanation


    Indices: 34504--34565  Score: 70
    Period size: 18  Copynumber: 3.4  Consensus size: 18

      34494 GTGGGGTGGA

                   *          
      34504 TGCATTGTGTGTATTGGG
          1 TGCATTGGGTGTATTGGG

              *        *      
      34522 TGTATTGGGTGCATTGGG
          1 TGCATTGGGTGTATTGGG

                    *       **
      34540 TGCATTGGATGTATTGAT
          1 TGCATTGGGTGTATTGGG

                    
      34558 TGCATTGG
          1 TGCATTGG

      34566 ATATAATGAT


Statistics
Matches: 36,  Mismatches: 8, Indels: 0
        0.82            0.18        0.00

Matches are distributed among these distances:
  18   36  1.00

ACGTcount: A:0.15, C:0.06, G:0.37, T:0.42


Consensus pattern (18 bp):   
TGCATTGGGTGTATTGGG

Left flanking sequence: Indices 34004 -- 34503
GCTTCTTGAAGTGGAGCTGGTGGGCCAACACAAAGCTCATCACGTACGAGCCCAGCCCGATCCGC
GACACCCCGACGGTGGACCCGTCGAGCTCGCTCTTGTCCTGGAGGCCCAGCTGGGCCCCGGCCGA
GATGGCCCAGCAAAGGGGCAGCTTGACGTAGGTGCCAATGACCTTGTTGGCGGTGTTGCCCTTGG
CAATGTCGGAAATGAACCCCTCGGTCAACCCAATGGCAATGTCGACCTCGTCGTCGTTGAGCAAC
TTGACCAACCGCCCGGTGCCCTCGATCACGGGGACAAACTTGACCTCGGTCTTGAAGAACTGGTG
CTTGAGAGCAAGGAAGAGTGGCAGAGCAAAGTGCTCGGGGATGTAGGCGACTCTCAACATGGTGC
GTGCGAGTGAAAAATGGATTGGTGTGTGGTTGTGTGGGGAACGGAATGAAGGTGAAAAAAAGGGT
GGTGCATGGAATGTGGGTGAATGGGATGGTTAGTGGTGGGGTGGA


Right flanking sequence: Indices 34566 -- 35065
ATATAATGATCGCATGGGGTGTAGTAAGGCTAGTAGAGTGGATCGCAGTGATCTTAGTGATAAGG
TCTTCTGAACTAAAGTTGATCAAAACAGAAAAAGGGATGAAGAATTGACCAACGTAGAGTGGATC
CCATTGGGAATTTTGTCAATTGGTCAATTGAGTGGAGATTCTACGATCTGGTCACCTCGTTACGG
TCGTCACGCCAATTTCGCACTGCTACCCCTATTGGCGAATGTCTCGTCTAAACGCTGTGGCTGAC
CACACTCAAAGGCGCCTCTCGTAATACTTCGGATCCTTCTCGGACCCGTCTTCGACAAAACTGTA
CTCTCGTAACACGTCTGGTAACCTCAAAACCGTCAATACCCATCAATCACCATCAACACCCACCT
ATCACCATCACACCCACTCACCACATTCATTCTCCACTCATCTAACCACCATACTCACCCCTTAT
TATACTACTTCTCCCACTCTACACCCCCATCTCTGGCTCTCTGGC



Found at i:34575 original size:18 final size:18

Alignment explanation


    Indices: 34540--34580  Score: 55
    Period size: 18  Copynumber: 2.3  Consensus size: 18

      34530 GTGCATTGGG

                      *  *    
      34540 TGCATTGGATGTATTGAT
          1 TGCATTGGATATAATGAT

                              
      34558 TGCATTGGATATAATGAT
          1 TGCATTGGATATAATGAT

            *    
      34576 CGCAT
          1 TGCAT

      34581 GGGGTGTAGT


Statistics
Matches: 20,  Mismatches: 3, Indels: 0
        0.87            0.13        0.00

Matches are distributed among these distances:
  18   20  1.00

ACGTcount: A:0.27, C:0.10, G:0.24, T:0.39


Consensus pattern (18 bp):   
TGCATTGGATATAATGAT

Left flanking sequence: Indices 34040 -- 34539
TCATCACGTACGAGCCCAGCCCGATCCGCGACACCCCGACGGTGGACCCGTCGAGCTCGCTCTTG
TCCTGGAGGCCCAGCTGGGCCCCGGCCGAGATGGCCCAGCAAAGGGGCAGCTTGACGTAGGTGCC
AATGACCTTGTTGGCGGTGTTGCCCTTGGCAATGTCGGAAATGAACCCCTCGGTCAACCCAATGG
CAATGTCGACCTCGTCGTCGTTGAGCAACTTGACCAACCGCCCGGTGCCCTCGATCACGGGGACA
AACTTGACCTCGGTCTTGAAGAACTGGTGCTTGAGAGCAAGGAAGAGTGGCAGAGCAAAGTGCTC
GGGGATGTAGGCGACTCTCAACATGGTGCGTGCGAGTGAAAAATGGATTGGTGTGTGGTTGTGTG
GGGAACGGAATGAAGGTGAAAAAAAGGGTGGTGCATGGAATGTGGGTGAATGGGATGGTTAGTGG
TGGGGTGGATGCATTGTGTGTATTGGGTGTATTGGGTGCATTGGG


Right flanking sequence: Indices 34581 -- 35080
GGGGTGTAGTAAGGCTAGTAGAGTGGATCGCAGTGATCTTAGTGATAAGGTCTTCTGAACTAAAG
TTGATCAAAACAGAAAAAGGGATGAAGAATTGACCAACGTAGAGTGGATCCCATTGGGAATTTTG
TCAATTGGTCAATTGAGTGGAGATTCTACGATCTGGTCACCTCGTTACGGTCGTCACGCCAATTT
CGCACTGCTACCCCTATTGGCGAATGTCTCGTCTAAACGCTGTGGCTGACCACACTCAAAGGCGC
CTCTCGTAATACTTCGGATCCTTCTCGGACCCGTCTTCGACAAAACTGTACTCTCGTAACACGTC
TGGTAACCTCAAAACCGTCAATACCCATCAATCACCATCAACACCCACCTATCACCATCACACCC
ACTCACCACATTCATTCTCCACTCATCTAACCACCATACTCACCCCTTATTATACTACTTCTCCC
ACTCTACACCCCCATCTCTGGCTCTCTGGCTTTCATTCATTCATT



Found at i:34951 original size:20 final size:20

Alignment explanation


    Indices: 34923--34972  Score: 66
    Period size: 20  Copynumber: 2.5  Consensus size: 20

      34913 CTCAAAACCG

                *     *         
      34923 TCAATACCCATCAATCACCA
          1 TCAACACCCACCAATCACCA

                        *       
      34943 TCAACACCCACCTATCACCA
          1 TCAACACCCACCAATCACCA

                       
      34963 TC-ACACCCAC
          1 TCAACACCCAC

      34973 TCACCACATT


Statistics
Matches: 27,  Mismatches: 3, Indels: 1
        0.87            0.10        0.03

Matches are distributed among these distances:
  19    8  0.30
  20   19  0.70

ACGTcount: A:0.36, C:0.48, G:0.00, T:0.16


Consensus pattern (20 bp):   
TCAACACCCACCAATCACCA

Left flanking sequence: Indices 34423 -- 34922
TTGTGTGGGGAACGGAATGAAGGTGAAAAAAAGGGTGGTGCATGGAATGTGGGTGAATGGGATGG
TTAGTGGTGGGGTGGATGCATTGTGTGTATTGGGTGTATTGGGTGCATTGGGTGCATTGGATGTA
TTGATTGCATTGGATATAATGATCGCATGGGGTGTAGTAAGGCTAGTAGAGTGGATCGCAGTGAT
CTTAGTGATAAGGTCTTCTGAACTAAAGTTGATCAAAACAGAAAAAGGGATGAAGAATTGACCAA
CGTAGAGTGGATCCCATTGGGAATTTTGTCAATTGGTCAATTGAGTGGAGATTCTACGATCTGGT
CACCTCGTTACGGTCGTCACGCCAATTTCGCACTGCTACCCCTATTGGCGAATGTCTCGTCTAAA
CGCTGTGGCTGACCACACTCAAAGGCGCCTCTCGTAATACTTCGGATCCTTCTCGGACCCGTCTT
CGACAAAACTGTACTCTCGTAACACGTCTGGTAACCTCAAAACCG


Right flanking sequence: Indices 34973 -- 35472
TCACCACATTCATTCTCCACTCATCTAACCACCATACTCACCCCTTATTATACTACTTCTCCCAC
TCTACACCCCCATCTCTGGCTCTCTGGCTTTCATTCATTCATTATCTAACAAGCACACTCACCAC
CCGCCCGGGCGGGCTCCGCCCCCGAAAGGTCGATGCGGCCCTCCTGCGGGCGCTCCTGCTCGGCC
GCCTCCTCCGGGATCTTCTTCCCGATGGCGACAAACACCTCCGTCACGTTCTTGCCCGTCTTGGC
CAGGGTCTCAAACCACAACAACCCCTCCTCGTCGGCTAGGCTCTTGCCCTCCTCCTCGGTGACCT
TGCGCAGGTCGGCGTCGTCGTCCACGAGATCGACCTTGTTGCCCACAAGCGCAATCACTATGTCC
TTGCTTGCCTGCTCGTGGAGCTCCTTGACCCAGTGGCGCGCCTTGATGAGCAGGGCGGGCTTGGT
GACGTCGTACACCACGAGCGCCGCCTGGGCCTTGCGGTAGTACAT



Found at i:37659 original size:24 final size:24

Alignment explanation


    Indices: 37632--37694  Score: 108
    Period size: 24  Copynumber: 2.6  Consensus size: 24

      37622 CACCGGTTAC

                                    
      37632 AGGAGGAGAAGAAGGAGGAAAAGA
          1 AGGAGGAGAAGAAGGAGGAAAAGA

                   *                
      37656 AGGAGGAAAAGAAGGAGGAAAAGA
          1 AGGAGGAGAAGAAGGAGGAAAAGA

                  *        
      37680 AGGAGGTGAAGAAGG
          1 AGGAGGAGAAGAAGG

      37695 TCTAGAGTCT


Statistics
Matches: 36,  Mismatches: 3, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
  24   36  1.00

ACGTcount: A:0.52, C:0.00, G:0.46, T:0.02


Consensus pattern (24 bp):   
AGGAGGAGAAGAAGGAGGAAAAGA

Left flanking sequence: Indices 37132 -- 37631
CCCGCTAGTAGAGCAGCAGATCACCAAGTGCCACAAGTACTGGCCCGACCAGGGCGAGATCTGGG
ATCTCTCGGGCGGGTTCGACGGATACTCGCAGTTTACCGTCGAGCTCGTCCAAACCGAGCACCAC
CGCAGCCAGTTCATCGTAAGCACGTTCAAGGTGGTGGCGGACGGGCGCGAGCTCGAGGTGGTGCA
CTACTACTACCCGCAGTGGTCGGACGCCAAGGTGCCTCCGAGCATCGACGACCTTGTGCAGTTGG
CAGACGAGCTCCAGGCGCTCCGCCAGCTGACAGAAACCGGTAAGCTCACGCCCATCGTCCATTGT
TCTGCGGGTGTTGGTCGCACCGGCACCTTCATCGCCATCGACCAGCTCTTGTACGGGTCGCACGG
GTCGGGCGACGTCGTGAAGGACTTGGTGCAGCGGATGCGCGACCACCGCATGTTGATGGTGCAGA
CCGTGCACCAGTACTCGTACTTGCAAGAACACCGCCACCGGTTAC


Right flanking sequence: Indices 37695 -- 38194
TCTAGAGTCTCACGTGCGGTGCCAGTGACACAAAGCGAGATTTCTTGGCTCGAGCCGGGAACCAT
GACAGGTTTGTAGCTTTGAAGGTGTAGCTTTGTAGGTTCATAGCCTTGGGTTTATAGCTTTGTAG
GTTTGTCGGTGCCTGGCGTGTTCGCAACGATAAGCGAAGAACGTGAATAAACACCTACGTAATCT
CCTTCGAGAATTTCACTTGACAGATTAAGCTTTCTATCCGAGACACATTCCGCCCACGTAGGCGA
GATACGCGACTTTCGCCTGTGACAGACTAGCACCTAATCGGCTTAGCCAGTCTAGCTAATGTTTG
CACTGTCGCAAACTAGGTTCTTAGCTGTTTCGCCCGTGTTTCACTGGGGCTCTGGAATGTCGTAG
TCACTGGTCCTCACCTCAGAATGCTAACACGCGTGCTTAGCCGGGATGCATGAACCCCATGCCAT
TAACTGAATCCGGACATATTCCGGGTTCCATGCAGAGGTCGATGA



Found at i:37694 original size:12 final size:12

Alignment explanation


    Indices: 37632--37685  Score: 99
    Period size: 12  Copynumber: 4.5  Consensus size: 12

      37622 CACCGGTTAC

                   *    
      37632 AGGAGGAGAAGA
          1 AGGAGGAAAAGA

                        
      37644 AGGAGGAAAAGA
          1 AGGAGGAAAAGA

                        
      37656 AGGAGGAAAAGA
          1 AGGAGGAAAAGA

                        
      37668 AGGAGGAAAAGA
          1 AGGAGGAAAAGA

                  
      37680 AGGAGG
          1 AGGAGG

      37686 TGAAGAAGGT


Statistics
Matches: 41,  Mismatches: 1, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
  12   41  1.00

ACGTcount: A:0.54, C:0.00, G:0.46, T:0.00


Consensus pattern (12 bp):   
AGGAGGAAAAGA

Left flanking sequence: Indices 37132 -- 37631
CCCGCTAGTAGAGCAGCAGATCACCAAGTGCCACAAGTACTGGCCCGACCAGGGCGAGATCTGGG
ATCTCTCGGGCGGGTTCGACGGATACTCGCAGTTTACCGTCGAGCTCGTCCAAACCGAGCACCAC
CGCAGCCAGTTCATCGTAAGCACGTTCAAGGTGGTGGCGGACGGGCGCGAGCTCGAGGTGGTGCA
CTACTACTACCCGCAGTGGTCGGACGCCAAGGTGCCTCCGAGCATCGACGACCTTGTGCAGTTGG
CAGACGAGCTCCAGGCGCTCCGCCAGCTGACAGAAACCGGTAAGCTCACGCCCATCGTCCATTGT
TCTGCGGGTGTTGGTCGCACCGGCACCTTCATCGCCATCGACCAGCTCTTGTACGGGTCGCACGG
GTCGGGCGACGTCGTGAAGGACTTGGTGCAGCGGATGCGCGACCACCGCATGTTGATGGTGCAGA
CCGTGCACCAGTACTCGTACTTGCAAGAACACCGCCACCGGTTAC


Right flanking sequence: Indices 37686 -- 38185
TGAAGAAGGTCTAGAGTCTCACGTGCGGTGCCAGTGACACAAAGCGAGATTTCTTGGCTCGAGCC
GGGAACCATGACAGGTTTGTAGCTTTGAAGGTGTAGCTTTGTAGGTTCATAGCCTTGGGTTTATA
GCTTTGTAGGTTTGTCGGTGCCTGGCGTGTTCGCAACGATAAGCGAAGAACGTGAATAAACACCT
ACGTAATCTCCTTCGAGAATTTCACTTGACAGATTAAGCTTTCTATCCGAGACACATTCCGCCCA
CGTAGGCGAGATACGCGACTTTCGCCTGTGACAGACTAGCACCTAATCGGCTTAGCCAGTCTAGC
TAATGTTTGCACTGTCGCAAACTAGGTTCTTAGCTGTTTCGCCCGTGTTTCACTGGGGCTCTGGA
ATGTCGTAGTCACTGGTCCTCACCTCAGAATGCTAACACGCGTGCTTAGCCGGGATGCATGAACC
CCATGCCATTAACTGAATCCGGACATATTCCGGGTTCCATGCAGA



Found at i:39294 original size:12 final size:12

Alignment explanation


    Indices: 39148--39286  Score: 176
    Period size: 12  Copynumber: 11.8  Consensus size: 12

      39138 GAGGAACAGT

                        
      39148 CTCAGGACCAAC
          1 CTCAGGACCAAC

                        
      39160 CTCAGGACCAAC
          1 CTCAGGACCAAC

             *      *   
      39172 CCCAGGACAAAC
          1 CTCAGGACCAAC

                      **
      39184 CT---GACCAGT
          1 CTCAGGACCAAC

                        
      39193 CTCAGGACCAAC
          1 CTCAGGACCAAC

                   *    
      39205 CTCAGGAACAAC
          1 CTCAGGACCAAC

                        
      39217 CTCAGGACCAAC
          1 CTCAGGACCAAC

                        
      39229 CTCAGGACCAAC
          1 CTCAGGACCAAC

                        
      39241 CTCAGGACCAAC
          1 CTCAGGACCAAC

                        
      39253 CTCAGGACCAAC
          1 CTCAGGACCAAC

             *  *     **
      39265 CCCAAGACCAGT
          1 CTCAGGACCAAC

                      
      39277 CTCAGGACCA
          1 CTCAGGACCA

      39287 GTCTCAGGGC


Statistics
Matches: 108,  Mismatches: 16, Indels: 6
        0.83            0.12        0.05

Matches are distributed among these distances:
   9    6  0.06
  12  102  0.94

ACGTcount: A:0.34, C:0.40, G:0.17, T:0.09


Consensus pattern (12 bp):   
CTCAGGACCAAC

Left flanking sequence: Indices 38648 -- 39147
TGCGTCGCTGTCGACCCCAGCGTTCTGTTCACTCCAACTTTTGTCACTCCTTACCCCTAAGTTCT
GAACCTGTCCTTTCCTTATGTATTTGTTCAATTTTGCAGCCCTCGCAGTGATTGCCGGTGGGCTT
GTTGATGCGCTCCCCGTGGCCGCGCCCGCCCAGGAAAACATTCCTGGTCTTCCGGGCAGCGCTGT
TGCCTATGTGGGTAGTCCCGTGGTGGAGAAGAGAGCTGAGGTGCCCCGCGCGAAGAGATTCCAGT
CCTGGGCCGACTGGTACAAACAGAGGGAACAGGCCCGCAAGGAGCTTTACGCGAAGAACGGTTGG
AAGTTTGTGCCTGAACCCGACCCCTTTGCGGGGCAGCAAGGCCCCAACTTTAAGATCCTTCACGT
CAACGAGCAAGGCGAGCCCATTGCGGGCCCTGCTCAGGGTGGTGAGGGTGGTCAAGAGGGCCAAA
CTGAAGAGCAGCCTCAGAACCAACCCGACCAGCCCGAGGAACAGT


Right flanking sequence: Indices 39287 -- 39786
GTCTCAGGGCGAGTCCCAAGATTCTCAGTCTCCTCTGGTCCAAAAGGCCCAGCCTGTAGACCAAT
CGGACCAGACCACCGAAAAGGCTACCGCCGGTGCTGGTCCCTCCGCTGGTGCTGGCCCTGCCTCC
GCTCCCCTGAACGACGAGGCCGTGGCCAACGACGACGCTGCCCTCGCCAACGACGCCCACTACAA
CGTCAAGATGGTCGAGGAGAAGACCGACGCGGCTCAGGCTGCCGACGAGCTGCCCGCCCAGACCC
CCGAGGCGTCTCCTCCTGCCACCACCCAGGCCGCAAAGATCAACCTGGACGACTTGGTTGTCGAC
AAGAACTGGTTTGGCGAGGACCGCACCTTCCGTGACTGTGTGTCCAAGGTCGGGGGTGACGTTCC
CCAGCAGGACTACCCCGTGCCTGACCCCACTCCCGTCCAGGATAACGCTGAGGCCACCTCTGTGG
AAGCCTGGGACGCGGTGGGCCCCAAGGCGGTCAACGTGTTGATCC



Found at i:39402 original size:18 final size:17

Alignment explanation


    Indices: 39376--39410  Score: 52
    Period size: 18  Copynumber: 2.0  Consensus size: 17

      39366 GAAAAGGCTA

                              
      39376 CCGCCGGTGCTGGTCCCT
          1 CCGCCGGTGCTGG-CCCT

                *            
      39394 CCGCTGGTGCTGGCCCT
          1 CCGCCGGTGCTGGCCCT

      39411 GCCTCCGCTC


Statistics
Matches: 16,  Mismatches: 1, Indels: 1
        0.89            0.06        0.06

Matches are distributed among these distances:
  17    4  0.25
  18   12  0.75

ACGTcount: A:0.00, C:0.43, G:0.34, T:0.23


Consensus pattern (17 bp):   
CCGCCGGTGCTGGCCCT

Left flanking sequence: Indices 38876 -- 39375
AGCTGAGGTGCCCCGCGCGAAGAGATTCCAGTCCTGGGCCGACTGGTACAAACAGAGGGAACAGG
CCCGCAAGGAGCTTTACGCGAAGAACGGTTGGAAGTTTGTGCCTGAACCCGACCCCTTTGCGGGG
CAGCAAGGCCCCAACTTTAAGATCCTTCACGTCAACGAGCAAGGCGAGCCCATTGCGGGCCCTGC
TCAGGGTGGTGAGGGTGGTCAAGAGGGCCAAACTGAAGAGCAGCCTCAGAACCAACCCGACCAGC
CCGAGGAACAGTCTCAGGACCAACCTCAGGACCAACCCCAGGACAAACCTGACCAGTCTCAGGAC
CAACCTCAGGAACAACCTCAGGACCAACCTCAGGACCAACCTCAGGACCAACCTCAGGACCAACC
CCAAGACCAGTCTCAGGACCAGTCTCAGGGCGAGTCCCAAGATTCTCAGTCTCCTCTGGTCCAAA
AGGCCCAGCCTGTAGACCAATCGGACCAGACCACCGAAAAGGCTA


Right flanking sequence: Indices 39411 -- 39910
GCCTCCGCTCCCCTGAACGACGAGGCCGTGGCCAACGACGACGCTGCCCTCGCCAACGACGCCCA
CTACAACGTCAAGATGGTCGAGGAGAAGACCGACGCGGCTCAGGCTGCCGACGAGCTGCCCGCCC
AGACCCCCGAGGCGTCTCCTCCTGCCACCACCCAGGCCGCAAAGATCAACCTGGACGACTTGGTT
GTCGACAAGAACTGGTTTGGCGAGGACCGCACCTTCCGTGACTGTGTGTCCAAGGTCGGGGGTGA
CGTTCCCCAGCAGGACTACCCCGTGCCTGACCCCACTCCCGTCCAGGATAACGCTGAGGCCACCT
CTGTGGAAGCCTGGGACGCGGTGGGCCCCAAGGCGGTCAACGTGTTGATCCGGACCAAGAACGGG
GCTACCCAGACCCCGAAGGAGGACGCCAACGCAGTGACCACCGGTGCCAACTCTCCTGCTGCCCC
GACTGCTCCGGCTACTACTGCTCCTACTACTGCTCCTACTACGCA



Found at i:39453 original size:21 final size:21

Alignment explanation


    Indices: 39427--39471  Score: 54
    Period size: 21  Copynumber: 2.1  Consensus size: 21

      39417 GCTCCCCTGA

                       * *       
      39427 ACGACGAGGCCGTGGCCAACG
          1 ACGACGAGGCCCTCGCCAACG

                  **             
      39448 ACGACGCTGCCCTCGCCAACG
          1 ACGACGAGGCCCTCGCCAACG

               
      39469 ACG
          1 ACG

      39472 CCCACTACAA


Statistics
Matches: 20,  Mismatches: 4, Indels: 0
        0.83            0.17        0.00

Matches are distributed among these distances:
  21   20  1.00

ACGTcount: A:0.22, C:0.40, G:0.31, T:0.07


Consensus pattern (21 bp):   
ACGACGAGGCCCTCGCCAACG

Left flanking sequence: Indices 38927 -- 39426
ACAGAGGGAACAGGCCCGCAAGGAGCTTTACGCGAAGAACGGTTGGAAGTTTGTGCCTGAACCCG
ACCCCTTTGCGGGGCAGCAAGGCCCCAACTTTAAGATCCTTCACGTCAACGAGCAAGGCGAGCCC
ATTGCGGGCCCTGCTCAGGGTGGTGAGGGTGGTCAAGAGGGCCAAACTGAAGAGCAGCCTCAGAA
CCAACCCGACCAGCCCGAGGAACAGTCTCAGGACCAACCTCAGGACCAACCCCAGGACAAACCTG
ACCAGTCTCAGGACCAACCTCAGGAACAACCTCAGGACCAACCTCAGGACCAACCTCAGGACCAA
CCTCAGGACCAACCCCAAGACCAGTCTCAGGACCAGTCTCAGGGCGAGTCCCAAGATTCTCAGTC
TCCTCTGGTCCAAAAGGCCCAGCCTGTAGACCAATCGGACCAGACCACCGAAAAGGCTACCGCCG
GTGCTGGTCCCTCCGCTGGTGCTGGCCCTGCCTCCGCTCCCCTGA


Right flanking sequence: Indices 39472 -- 39971
CCCACTACAACGTCAAGATGGTCGAGGAGAAGACCGACGCGGCTCAGGCTGCCGACGAGCTGCCC
GCCCAGACCCCCGAGGCGTCTCCTCCTGCCACCACCCAGGCCGCAAAGATCAACCTGGACGACTT
GGTTGTCGACAAGAACTGGTTTGGCGAGGACCGCACCTTCCGTGACTGTGTGTCCAAGGTCGGGG
GTGACGTTCCCCAGCAGGACTACCCCGTGCCTGACCCCACTCCCGTCCAGGATAACGCTGAGGCC
ACCTCTGTGGAAGCCTGGGACGCGGTGGGCCCCAAGGCGGTCAACGTGTTGATCCGGACCAAGAA
CGGGGCTACCCAGACCCCGAAGGAGGACGCCAACGCAGTGACCACCGGTGCCAACTCTCCTGCTG
CCCCGACTGCTCCGGCTACTACTGCTCCTACTACTGCTCCTACTACGCAGTCGTCTGCTGACAAG
AGTCAGGACAAGAAGATCGATATTGAGGGCCAGCAAAAGCAGATC



Found at i:39887 original size:15 final size:13

Alignment explanation


    Indices: 39867--39907  Score: 50
    Period size: 12  Copynumber: 3.2  Consensus size: 13

      39857 TGCTGCCCCG

                           
      39867 ACTGCTCCGGCTACT
          1 ACTGCTCC--CTACT

                         
      39882 ACTGCT-CCTACT
          1 ACTGCTCCCTACT

                         
      39894 ACTGCT-CCTACT
          1 ACTGCTCCCTACT

              
      39906 AC
          1 AC

      39908 GCAGTCGTCT


Statistics
Matches: 26,  Mismatches: 0, Indels: 3
        0.90            0.00        0.10

Matches are distributed among these distances:
  12   19  0.73
  14    1  0.04
  15    6  0.23

ACGTcount: A:0.17, C:0.41, G:0.12, T:0.29


Consensus pattern (13 bp):   
ACTGCTCCCTACT

Left flanking sequence: Indices 39367 -- 39866
AAAAGGCTACCGCCGGTGCTGGTCCCTCCGCTGGTGCTGGCCCTGCCTCCGCTCCCCTGAACGAC
GAGGCCGTGGCCAACGACGACGCTGCCCTCGCCAACGACGCCCACTACAACGTCAAGATGGTCGA
GGAGAAGACCGACGCGGCTCAGGCTGCCGACGAGCTGCCCGCCCAGACCCCCGAGGCGTCTCCTC
CTGCCACCACCCAGGCCGCAAAGATCAACCTGGACGACTTGGTTGTCGACAAGAACTGGTTTGGC
GAGGACCGCACCTTCCGTGACTGTGTGTCCAAGGTCGGGGGTGACGTTCCCCAGCAGGACTACCC
CGTGCCTGACCCCACTCCCGTCCAGGATAACGCTGAGGCCACCTCTGTGGAAGCCTGGGACGCGG
TGGGCCCCAAGGCGGTCAACGTGTTGATCCGGACCAAGAACGGGGCTACCCAGACCCCGAAGGAG
GACGCCAACGCAGTGACCACCGGTGCCAACTCTCCTGCTGCCCCG


Right flanking sequence: Indices 39908 -- 40407
GCAGTCGTCTGCTGACAAGAGTCAGGACAAGAAGATCGATATTGAGGGCCAGCAAAAGCAGATCA
CCCCTGATACCGCTAAACCTACTGAGAACACCACGCCTACTAAACCTACTGAGGACTCCAAGCCC
ACCAAACCCACTGAGGACTCCAAGCCCACCAAACCTACTACCGACAACGTCTCGTCTGGTGGTTC
CATGAGTGCGCAACAGAAACAAGAGATCCTCCGGCTCCACAACGAGAAGCGGGCTTTGTGCAATG
CTCCCCCGATGTCGTGGGACGCCGAGGCTGAACAACAGGCTGAAACGTGGGCAAACAACGTACAG
TGTGCGTTCAAGCATGACGACAAGATTAGCTTTGGGCAAAACTTGATTCAAGGAGGCGCCGTGGA
CGCCAAGGCCGCCGTGGATGGCTGGTACAAGGAGCACGAATTATATCGCAAGGGTGACCCCTTCT
CTTCGCTGACCGGCCATTTCACCCAACTCGTGTGGAAAACCTCGA



Found at i:39894 original size:12 final size:12

Alignment explanation


    Indices: 39877--39907  Score: 62
    Period size: 12  Copynumber: 2.6  Consensus size: 12

      39867 ACTGCTCCGG

                        
      39877 CTACTACTGCTC
          1 CTACTACTGCTC

                        
      39889 CTACTACTGCTC
          1 CTACTACTGCTC

                   
      39901 CTACTAC
          1 CTACTAC

      39908 GCAGTCGTCT


Statistics
Matches: 19,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   19  1.00

ACGTcount: A:0.19, C:0.42, G:0.06, T:0.32


Consensus pattern (12 bp):   
CTACTACTGCTC

Left flanking sequence: Indices 39377 -- 39876
CGCCGGTGCTGGTCCCTCCGCTGGTGCTGGCCCTGCCTCCGCTCCCCTGAACGACGAGGCCGTGG
CCAACGACGACGCTGCCCTCGCCAACGACGCCCACTACAACGTCAAGATGGTCGAGGAGAAGACC
GACGCGGCTCAGGCTGCCGACGAGCTGCCCGCCCAGACCCCCGAGGCGTCTCCTCCTGCCACCAC
CCAGGCCGCAAAGATCAACCTGGACGACTTGGTTGTCGACAAGAACTGGTTTGGCGAGGACCGCA
CCTTCCGTGACTGTGTGTCCAAGGTCGGGGGTGACGTTCCCCAGCAGGACTACCCCGTGCCTGAC
CCCACTCCCGTCCAGGATAACGCTGAGGCCACCTCTGTGGAAGCCTGGGACGCGGTGGGCCCCAA
GGCGGTCAACGTGTTGATCCGGACCAAGAACGGGGCTACCCAGACCCCGAAGGAGGACGCCAACG
CAGTGACCACCGGTGCCAACTCTCCTGCTGCCCCGACTGCTCCGG


Right flanking sequence: Indices 39908 -- 40407
GCAGTCGTCTGCTGACAAGAGTCAGGACAAGAAGATCGATATTGAGGGCCAGCAAAAGCAGATCA
CCCCTGATACCGCTAAACCTACTGAGAACACCACGCCTACTAAACCTACTGAGGACTCCAAGCCC
ACCAAACCCACTGAGGACTCCAAGCCCACCAAACCTACTACCGACAACGTCTCGTCTGGTGGTTC
CATGAGTGCGCAACAGAAACAAGAGATCCTCCGGCTCCACAACGAGAAGCGGGCTTTGTGCAATG
CTCCCCCGATGTCGTGGGACGCCGAGGCTGAACAACAGGCTGAAACGTGGGCAAACAACGTACAG
TGTGCGTTCAAGCATGACGACAAGATTAGCTTTGGGCAAAACTTGATTCAAGGAGGCGCCGTGGA
CGCCAAGGCCGCCGTGGATGGCTGGTACAAGGAGCACGAATTATATCGCAAGGGTGACCCCTTCT
CTTCGCTGACCGGCCATTTCACCCAACTCGTGTGGAAAACCTCGA



Found at i:40023 original size:27 final size:27

Alignment explanation


    Indices: 39987--40076  Score: 126
    Period size: 27  Copynumber: 3.3  Consensus size: 27

      39977 TGATACCGCT

                        *  *   *   *  *
      39987 AAACCTACTGAGAACACCACGCCTACT
          1 AAACCTACTGAGGACTCCAAGCCCACC

                                       
      40014 AAACCTACTGAGGACTCCAAGCCCACC
          1 AAACCTACTGAGGACTCCAAGCCCACC

                 *                     
      40041 AAACCCACTGAGGACTCCAAGCCCACC
          1 AAACCTACTGAGGACTCCAAGCCCACC

                     
      40068 AAACCTACT
          1 AAACCTACT

      40077 ACCGACAACG


Statistics
Matches: 56,  Mismatches: 7, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  27   56  1.00

ACGTcount: A:0.36, C:0.40, G:0.12, T:0.12


Consensus pattern (27 bp):   
AAACCTACTGAGGACTCCAAGCCCACC

Left flanking sequence: Indices 39487 -- 39986
AGATGGTCGAGGAGAAGACCGACGCGGCTCAGGCTGCCGACGAGCTGCCCGCCCAGACCCCCGAG
GCGTCTCCTCCTGCCACCACCCAGGCCGCAAAGATCAACCTGGACGACTTGGTTGTCGACAAGAA
CTGGTTTGGCGAGGACCGCACCTTCCGTGACTGTGTGTCCAAGGTCGGGGGTGACGTTCCCCAGC
AGGACTACCCCGTGCCTGACCCCACTCCCGTCCAGGATAACGCTGAGGCCACCTCTGTGGAAGCC
TGGGACGCGGTGGGCCCCAAGGCGGTCAACGTGTTGATCCGGACCAAGAACGGGGCTACCCAGAC
CCCGAAGGAGGACGCCAACGCAGTGACCACCGGTGCCAACTCTCCTGCTGCCCCGACTGCTCCGG
CTACTACTGCTCCTACTACTGCTCCTACTACGCAGTCGTCTGCTGACAAGAGTCAGGACAAGAAG
ATCGATATTGAGGGCCAGCAAAAGCAGATCACCCCTGATACCGCT


Right flanking sequence: Indices 40077 -- 40576
ACCGACAACGTCTCGTCTGGTGGTTCCATGAGTGCGCAACAGAAACAAGAGATCCTCCGGCTCCA
CAACGAGAAGCGGGCTTTGTGCAATGCTCCCCCGATGTCGTGGGACGCCGAGGCTGAACAACAGG
CTGAAACGTGGGCAAACAACGTACAGTGTGCGTTCAAGCATGACGACAAGATTAGCTTTGGGCAA
AACTTGATTCAAGGAGGCGCCGTGGACGCCAAGGCCGCCGTGGATGGCTGGTACAAGGAGCACGA
ATTATATCGCAAGGGTGACCCCTTCTCTTCGCTGACCGGCCATTTCACCCAACTCGTGTGGAAAA
CCTCGACGAAGCTTGGTTGTGCCATCCGCAAGTGTGGTGGTGGTAACGCGATCTACTGTACCTAC
AGTGAACGGGGCAATCTCCAAGGAGCGTTCTTGCAAAACGTCGATCTTCCGTCCCAAAAGTGAAG
TCGCCCTCCTAAACTTCGGTCTATTCTCTTCTGTTTCGATGCCCA



Found at i:41094 original size:20 final size:20

Alignment explanation


    Indices: 41071--41123  Score: 97
    Period size: 20  Copynumber: 2.6  Consensus size: 20

      41061 TAGAAGCGCT

                                
      41071 GTTGCGAGCTGGCCGCCCCA
          1 GTTGCGAGCTGGCCGCCCCA

                                
      41091 GTTGCGAGCTGGCCGCCCCA
          1 GTTGCGAGCTGGCCGCCCCA

                 *       
      41111 GTTGCTAGCTGGC
          1 GTTGCGAGCTGGC

      41124 TGGACCGCGT


Statistics
Matches: 32,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  20   32  1.00

ACGTcount: A:0.09, C:0.36, G:0.36, T:0.19


Consensus pattern (20 bp):   
GTTGCGAGCTGGCCGCCCCA

Left flanking sequence: Indices 40571 -- 41070
TGCCCAGGACACCCCCACGAATCTTTAGAATGAGCAATCGCAAAGGTTAGTCAACTCTTTGCGTG
CTCCGCCATATTTCCCCTCCTTTTAGCTAGTTTAGTTGGTGTTCAACACAGTTCTTTTTACTCCG
CCTTGCTGTAGTCCCGCCTGGTTGGCTGTACCACCAACTGGCAACCGAGCGCGTCGGTCGAAAGC
GCGACCAAGTGTATTGACACAAAGGGTGCGGTAGGTAATGCGTAAGGAGTGGGTCCAGCCCTTTC
CATCACTGTCCAGCCCCTCCAGCCCTTCCAGCCCACTGTCCAGCCCACGGCCGCCCAGCATATTT
TCTTGAAACCAGTGCTCTTAGACCATCGCTTAGTTTACATCGCTGATCCCAGTGGCCTAGTGACT
AATGGTTTTAGCTACACGCGGTTGAGCACGCGTCCTAACAGTCTCTCTAAATCCCTAGCCCCTTT
ACACCTTCATGCCTCACCGCCTCTGACCACGAGTCTAGAAGCGCT


Right flanking sequence: Indices 41124 -- 41623
TGGACCGCGTCGGGGTCTCGGCCATCGTGTCGCACGTCAACTCCTTCGCTGCAGGCACGGCCTAT
GCGACACTAGTGTCAGATCTACGGTTCAGCCCCGTTCCACCGTCCGTTTCACCTCACTGCTCGAG
CAGCACCGCTTCCGCCGCGTCTCCACGTTGCCCGATTGACACAAAACGCTGTTCCAGACCTTCGG
CTCAAGGTACCTCGCATCGAACGCGCTGGTTGGGGGGGCAACCACTGGTGCGGCTGGCGTGGACA
CCGTTTGCGAACATTTGTGCAACATTCCGTCGCGAAACTGGGAGCACCCCGGGAATCTAACCTGA
AACAAGGAGGGGAGTGGGAATGTAGCAAGTAGAGGGACAGCGAAAGCGGTAACTAACCAGCGATG
ACCACCAGCTAAACAACCAGCTATGACCAACCTCGCATCTTGGCCAGCACCGTTCTCTTCTCGAC
ACAGCCGCGACTCCGCCTTTATCCGTGTTCATAATATCGCGACCC



Found at i:42393 original size:13 final size:13

Alignment explanation


    Indices: 42375--42408  Score: 68
    Period size: 13  Copynumber: 2.6  Consensus size: 13

      42365 TTGCAGCAAA

                         
      42375 CAGATTGGTTAAC
          1 CAGATTGGTTAAC

                         
      42388 CAGATTGGTTAAC
          1 CAGATTGGTTAAC

                    
      42401 CAGATTGG
          1 CAGATTGG

      42409 GTTGCCACCG


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   21  1.00

ACGTcount: A:0.29, C:0.15, G:0.26, T:0.29


Consensus pattern (13 bp):   
CAGATTGGTTAAC

Left flanking sequence: Indices 41875 -- 42374
CGGGCCTTCCCCACTGAAACCACCAAGAATGAGAGCTTCTATTATCGTGTCTTCGTTGTTGGCTG
TGGTATGCGGGGCCCCGGTGGTCATTGACGGCGCCATGTACACCGCGCCCAACGCGGGCCGTCTG
GACCGCGAGTTGCGCCAGCTCCGTGACGCCAACCACCACCAGCGCTACGTCCGCAACATCGTCCA
CGTTGACCACTACCCGTTGCCGTGGCCCACCAAGAGCAACGAGGCCGAGGTGGTGGACACGTTCA
ACCACGCCTCCAAGCGCGACTTTGCCGAGAGCGAGCTCGTGCACCCGCTGGAGATGGTGATTGCC
TAGCATGCTTACGACTTACGACTTATGACCCATGACCTTTACTTCTCCCCTGGTTATTTTTGGAC
CGGGGTTTGCATTCCGTTGTATTGACAACCTTGGACCGATTTTGCGGGGTGGTGTTTACATGTCC
CGATTGGGTGGCGGCCAGTTGACAACCGCACCCGGTTGCAGCAAA


Right flanking sequence: Indices 42409 -- 42908
GTTGCCACCGGATCCCACTCACCCCTATGACGGTCGTCCTCTACGTCCCACTCACCCCGACGGTC
CATCCTCTACGTATAAATATCACGATTACATGTCATTAAATCATTATGCCATATATTAGTTCATT
AAGTCGGAGGTGGGTATGATAATAACCATCAGCGCCATAAGGAGTACCATAAAGGAGTAGTGCTA
GCTTGCACCATGACTATCATTCGAGGGATAGTCACCACTACATAGCCACCATTCATAGTCACCAT
TCATAGCCACCACCTTGGGTGCTACCCTAAGGTATTACCTTGAGGTACCACCTTGAAGTAACACC
CTGAGGTACCACCTTGAGGTACTACCTTAAAATAACACCTTGAGGTATTACCCTGAGGTACCCCT
TGGTATCCATTTGGTATCCACCCGGTATCATTAGTTAACACACGCCACCACCGCCGCGGCCACCC
CAGCCACCATCGCAAGGCTGGCCTGGTAGCTGCTGGCAGCGTTGG



Found at i:42483 original size:31 final size:31

Alignment explanation


    Indices: 42421--42485  Score: 87
    Period size: 33  Copynumber: 2.0  Consensus size: 31

      42411 TGCCACCGGA

                                   *         
      42421 TCCCACTCACCCCTATGACGGTCGTCCTCTACG
          1 TCCCACTCACCCC--TGACGGTCATCCTCTACG

                                            
      42454 TCCCACTCACCCC-GACGGTCCATCCTCTACG
          1 TCCCACTCACCCCTGACGGT-CATCCTCTACG

             
      42485 T
          1 T

      42486 ATAAATATCA


Statistics
Matches: 30,  Mismatches: 1, Indels: 4
        0.86            0.03        0.11

Matches are distributed among these distances:
  30    6  0.20
  31   11  0.37
  33   13  0.43

ACGTcount: A:0.15, C:0.48, G:0.14, T:0.23


Consensus pattern (31 bp):   
TCCCACTCACCCCTGACGGTCATCCTCTACG

Left flanking sequence: Indices 41921 -- 42420
GTGTCTTCGTTGTTGGCTGTGGTATGCGGGGCCCCGGTGGTCATTGACGGCGCCATGTACACCGC
GCCCAACGCGGGCCGTCTGGACCGCGAGTTGCGCCAGCTCCGTGACGCCAACCACCACCAGCGCT
ACGTCCGCAACATCGTCCACGTTGACCACTACCCGTTGCCGTGGCCCACCAAGAGCAACGAGGCC
GAGGTGGTGGACACGTTCAACCACGCCTCCAAGCGCGACTTTGCCGAGAGCGAGCTCGTGCACCC
GCTGGAGATGGTGATTGCCTAGCATGCTTACGACTTACGACTTATGACCCATGACCTTTACTTCT
CCCCTGGTTATTTTTGGACCGGGGTTTGCATTCCGTTGTATTGACAACCTTGGACCGATTTTGCG
GGGTGGTGTTTACATGTCCCGATTGGGTGGCGGCCAGTTGACAACCGCACCCGGTTGCAGCAAAC
AGATTGGTTAACCAGATTGGTTAACCAGATTGGGTTGCCACCGGA


Right flanking sequence: Indices 42486 -- 42985
ATAAATATCACGATTACATGTCATTAAATCATTATGCCATATATTAGTTCATTAAGTCGGAGGTG
GGTATGATAATAACCATCAGCGCCATAAGGAGTACCATAAAGGAGTAGTGCTAGCTTGCACCATG
ACTATCATTCGAGGGATAGTCACCACTACATAGCCACCATTCATAGTCACCATTCATAGCCACCA
CCTTGGGTGCTACCCTAAGGTATTACCTTGAGGTACCACCTTGAAGTAACACCCTGAGGTACCAC
CTTGAGGTACTACCTTAAAATAACACCTTGAGGTATTACCCTGAGGTACCCCTTGGTATCCATTT
GGTATCCACCCGGTATCATTAGTTAACACACGCCACCACCGCCGCGGCCACCCCAGCCACCATCG
CAAGGCTGGCCTGGTAGCTGCTGGCAGCGTTGGCCCGCGCAAGCAACCGCTTGAGCACCGACGGC
TCGTTGAGCATGGACATCATCGGGTCGTTGGTCAACCCGGTGGTG



Found at i:42666 original size:13 final size:13

Alignment explanation


    Indices: 42644--42680  Score: 65
    Period size: 13  Copynumber: 2.8  Consensus size: 13

      42634 GTCACCACTA

                         
      42644 CATAGCCACCATT
          1 CATAGCCACCATT

                 *       
      42657 CATAGTCACCATT
          1 CATAGCCACCATT

                       
      42670 CATAGCCACCA
          1 CATAGCCACCA

      42681 CCTTGGGTGC


Statistics
Matches: 22,  Mismatches: 2, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
  13   22  1.00

ACGTcount: A:0.32, C:0.38, G:0.08, T:0.22


Consensus pattern (13 bp):   
CATAGCCACCATT

Left flanking sequence: Indices 42144 -- 42643
CCAAGCGCGACTTTGCCGAGAGCGAGCTCGTGCACCCGCTGGAGATGGTGATTGCCTAGCATGCT
TACGACTTACGACTTATGACCCATGACCTTTACTTCTCCCCTGGTTATTTTTGGACCGGGGTTTG
CATTCCGTTGTATTGACAACCTTGGACCGATTTTGCGGGGTGGTGTTTACATGTCCCGATTGGGT
GGCGGCCAGTTGACAACCGCACCCGGTTGCAGCAAACAGATTGGTTAACCAGATTGGTTAACCAG
ATTGGGTTGCCACCGGATCCCACTCACCCCTATGACGGTCGTCCTCTACGTCCCACTCACCCCGA
CGGTCCATCCTCTACGTATAAATATCACGATTACATGTCATTAAATCATTATGCCATATATTAGT
TCATTAAGTCGGAGGTGGGTATGATAATAACCATCAGCGCCATAAGGAGTACCATAAAGGAGTAG
TGCTAGCTTGCACCATGACTATCATTCGAGGGATAGTCACCACTA


Right flanking sequence: Indices 42681 -- 43180
CCTTGGGTGCTACCCTAAGGTATTACCTTGAGGTACCACCTTGAAGTAACACCCTGAGGTACCAC
CTTGAGGTACTACCTTAAAATAACACCTTGAGGTATTACCCTGAGGTACCCCTTGGTATCCATTT
GGTATCCACCCGGTATCATTAGTTAACACACGCCACCACCGCCGCGGCCACCCCAGCCACCATCG
CAAGGCTGGCCTGGTAGCTGCTGGCAGCGTTGGCCCGCGCAAGCAACCGCTTGAGCACCGACGGC
TCGTTGAGCATGGACATCATCGGGTCGTTGGTCAACCCGGTGGTGGTGAAGTTGACGGGCGCCAG
GTAGTTGCCCTCGTAGACGGAACCGTCCCAGCAGTACTTGTCAAAGCACTTCTTGCACTCGTCCA
GCTGGTCGACGTCCTGGCGCTCCTGGGACCGCCGGATCATCGCACACGCAATACACTTGGGCCAG
TCTAGATCGAGGGTGGTGTTCGCCCGCGAAGCGACGTTCCACCCG



Found at i:42714 original size:13 final size:13

Alignment explanation


    Indices: 42705--42800  Score: 86
    Period size: 13  Copynumber: 7.5  Consensus size: 13

      42695 CTAAGGTATT

                         
      42705 ACCTTGAGGTACC
          1 ACCTTGAGGTACC

                   *   * 
      42718 ACCTTGAAGTAAC
          1 ACCTTGAGGTACC

               *         
      42731 ACCCTGAGGTACC
          1 ACCTTGAGGTACC

                        *
      42744 ACCTTGAGGTACT
          1 ACCTTGAGGTACC

                 * **  * 
      42757 ACCTTAAAATAAC
          1 ACCTTGAGGTACC

                       **
      42770 ACCTTGAGGTATT
          1 ACCTTGAGGTACC

               *         
      42783 ACCCTGAGGTACC
          1 ACCTTGAGGTACC

                  
      42796 -CCTTG
          1 ACCTTG

      42801 GTATCCATTT


Statistics
Matches: 62,  Mismatches: 21, Indels: 1
        0.74            0.25        0.01

Matches are distributed among these distances:
  12    4  0.06
  13   58  0.94

ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25


Consensus pattern (13 bp):   
ACCTTGAGGTACC

Left flanking sequence: Indices 42205 -- 42704
TGCTTACGACTTACGACTTATGACCCATGACCTTTACTTCTCCCCTGGTTATTTTTGGACCGGGG
TTTGCATTCCGTTGTATTGACAACCTTGGACCGATTTTGCGGGGTGGTGTTTACATGTCCCGATT
GGGTGGCGGCCAGTTGACAACCGCACCCGGTTGCAGCAAACAGATTGGTTAACCAGATTGGTTAA
CCAGATTGGGTTGCCACCGGATCCCACTCACCCCTATGACGGTCGTCCTCTACGTCCCACTCACC
CCGACGGTCCATCCTCTACGTATAAATATCACGATTACATGTCATTAAATCATTATGCCATATAT
TAGTTCATTAAGTCGGAGGTGGGTATGATAATAACCATCAGCGCCATAAGGAGTACCATAAAGGA
GTAGTGCTAGCTTGCACCATGACTATCATTCGAGGGATAGTCACCACTACATAGCCACCATTCAT
AGTCACCATTCATAGCCACCACCTTGGGTGCTACCCTAAGGTATT


Right flanking sequence: Indices 42801 -- 43300
GTATCCATTTGGTATCCACCCGGTATCATTAGTTAACACACGCCACCACCGCCGCGGCCACCCCA
GCCACCATCGCAAGGCTGGCCTGGTAGCTGCTGGCAGCGTTGGCCCGCGCAAGCAACCGCTTGAG
CACCGACGGCTCGTTGAGCATGGACATCATCGGGTCGTTGGTCAACCCGGTGGTGGTGAAGTTGA
CGGGCGCCAGGTAGTTGCCCTCGTAGACGGAACCGTCCCAGCAGTACTTGTCAAAGCACTTCTTG
CACTCGTCCAGCTGGTCGACGTCCTGGCGCTCCTGGGACCGCCGGATCATCGCACACGCAATACA
CTTGGGCCAGTCTAGATCGAGGGTGGTGTTCGCCCGCGAAGCGACGTTCCACCCGTTCTTGACCA
TCAAGTCGCGCTCGCTGTCCTTGTAGGTGAGGGTATACAACGAGGTGTTCAGCATCAAGTCGAAC
GGCCGGTTGGCCATGTACACCACCAACGGAGGCACCACGCCGTCC



Found at i:42741 original size:39 final size:39

Alignment explanation


    Indices: 42692--42800  Score: 139
    Period size: 39  Copynumber: 2.8  Consensus size: 39

      42682 CTTGGGTGCT

                 *                            *    
      42692 ACCCTAAGGTATTACCTTGAGGTACCACCTTGAAGTAAC
          1 ACCCTGAGGTATTACCTTGAGGTACCACCTTGAAATAAC

                       **            *     *       
      42731 ACCCTGAGGTACCACCTTGAGGTACTACCTTAAAATAAC
          1 ACCCTGAGGTATTACCTTGAGGTACCACCTTGAAATAAC

               *            *               
      42770 ACCTTGAGGTATTACCCTGAGGTACC-CCTTG
          1 ACCCTGAGGTATTACCTTGAGGTACCACCTTG

      42801 GTATCCATTT


Statistics
Matches: 58,  Mismatches: 12, Indels: 1
        0.82            0.17        0.01

Matches are distributed among these distances:
  38    4  0.07
  39   54  0.93

ACGTcount: A:0.28, C:0.28, G:0.18, T:0.26


Consensus pattern (39 bp):   
ACCCTGAGGTATTACCTTGAGGTACCACCTTGAAATAAC

Left flanking sequence: Indices 42192 -- 42691
TGATTGCCTAGCATGCTTACGACTTACGACTTATGACCCATGACCTTTACTTCTCCCCTGGTTAT
TTTTGGACCGGGGTTTGCATTCCGTTGTATTGACAACCTTGGACCGATTTTGCGGGGTGGTGTTT
ACATGTCCCGATTGGGTGGCGGCCAGTTGACAACCGCACCCGGTTGCAGCAAACAGATTGGTTAA
CCAGATTGGTTAACCAGATTGGGTTGCCACCGGATCCCACTCACCCCTATGACGGTCGTCCTCTA
CGTCCCACTCACCCCGACGGTCCATCCTCTACGTATAAATATCACGATTACATGTCATTAAATCA
TTATGCCATATATTAGTTCATTAAGTCGGAGGTGGGTATGATAATAACCATCAGCGCCATAAGGA
GTACCATAAAGGAGTAGTGCTAGCTTGCACCATGACTATCATTCGAGGGATAGTCACCACTACAT
AGCCACCATTCATAGTCACCATTCATAGCCACCACCTTGGGTGCT


Right flanking sequence: Indices 42801 -- 43300
GTATCCATTTGGTATCCACCCGGTATCATTAGTTAACACACGCCACCACCGCCGCGGCCACCCCA
GCCACCATCGCAAGGCTGGCCTGGTAGCTGCTGGCAGCGTTGGCCCGCGCAAGCAACCGCTTGAG
CACCGACGGCTCGTTGAGCATGGACATCATCGGGTCGTTGGTCAACCCGGTGGTGGTGAAGTTGA
CGGGCGCCAGGTAGTTGCCCTCGTAGACGGAACCGTCCCAGCAGTACTTGTCAAAGCACTTCTTG
CACTCGTCCAGCTGGTCGACGTCCTGGCGCTCCTGGGACCGCCGGATCATCGCACACGCAATACA
CTTGGGCCAGTCTAGATCGAGGGTGGTGTTCGCCCGCGAAGCGACGTTCCACCCGTTCTTGACCA
TCAAGTCGCGCTCGCTGTCCTTGTAGGTGAGGGTATACAACGAGGTGTTCAGCATCAAGTCGAAC
GGCCGGTTGGCCATGTACACCACCAACGGAGGCACCACGCCGTCC



Found at i:45043 original size:13 final size:13

Alignment explanation


    Indices: 45025--45057  Score: 66
    Period size: 13  Copynumber: 2.5  Consensus size: 13

      45015 CTGGAGCGGT

                         
      45025 CGTGGAGCCGTCC
          1 CGTGGAGCCGTCC

                         
      45038 CGTGGAGCCGTCC
          1 CGTGGAGCCGTCC

                   
      45051 CGTGGAG
          1 CGTGGAG

      45058 GGGGCACAGG


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   20  1.00

ACGTcount: A:0.09, C:0.33, G:0.42, T:0.15


Consensus pattern (13 bp):   
CGTGGAGCCGTCC

Left flanking sequence: Indices 44525 -- 45024
AGCTTGCTCAAGTCGTCCTTGAGCCCGACCTTCTCGGCGTACTTCTCCAACGCGGGCTTCACTTT
CTTTCTCCGAGCCTCCAACCACTTCTTCTCGCTGTCGGAAATGTCGTTCCCCTCGCGGAGAAGGT
TGGTGGCCGGGCATTGCACCTCGTCCGGGGCGTACCCGGTGGCGGCCACGAGGGCCATGGCCCAT
AGGAGAAGCAAAGGGTTCATCGTTGGCCAAATTGAGTAGCGTACCGGCCGGATTTTAACTTGCCC
GCAACTGTCATCCCGCTAGCTGTGGGGCGGCCCGTTATTACCCGATTGGGAAGTAGACATGCATG
TCCCCACCACAAGTGAAGCCAGGTACGATGGCCAACAAATGGTGGCCCCACTGGAGATGCGCTGG
AGCGTCAAAAGGATTGGCGGTTGCCGTCCCTCGTACTTGGTTTGTGGTGCTTGGCGATCCTTTGT
GTAGTTTTGTGCCGCATAAACAATACGGGAGCCGTCTGGAGCGGT


Right flanking sequence: Indices 45058 -- 45557
GGGGCACAGGCGGGGAGTGGCTTACGGAAATGCGCTATCTCTTTACGGTGTGCCATTCGTTGGGT
CCCATGGGCTTAGACGATGGCGCACGATGGCTTACGTGGGCTTACGTTGTGTTACGTTGGCTTAC
GAATGGCTTACGACATTGGTGCTTTATTCGCACAAAACGAAAACAATGCGTCGTGGGTGGTCCGC
GAAGGGAGGCCAAAACGAGTGTTGGGACCGGAGTAGCGTGGTTGATAAGAGTAGAGAAAATGTTT
TGTAGCCCTATAGTCACACGAGGGCAAGTCTCGCGGGACTACGAGAAATGTAACCGCCATTGTGG
TGCCCACCAGTGCCACCAGTGTCCACCAGTGCCCACCTATATGGTAACCACATTGGTGAATTTAG
CGAACCTGTCAAAGTGTTTAAAATGTTTGCAATGTTTACAATGTTTAATGCTTACTAACCTCACA
TCAGCGTCCACTTGCATAAACCACTCGCGAGCCCAGTCCCAACAT



Found at i:45408 original size:10 final size:9

Alignment explanation


    Indices: 45386--45415  Score: 51
    Period size: 9  Copynumber: 3.2  Consensus size: 9

      45376 ATTGTGGTGC

                     
      45386 CCACCAGTG
          1 CCACCAGTG

                     
      45395 CCACCAGTG
          1 CCACCAGTG

                      
      45404 TCCACCAGTG
          1 -CCACCAGTG

              
      45414 CC
          1 CC

      45416 CACCTATATG


Statistics
Matches: 20,  Mismatches: 0, Indels: 2
        0.91            0.00        0.09

Matches are distributed among these distances:
   9   11  0.55
  10    9  0.45

ACGTcount: A:0.20, C:0.47, G:0.20, T:0.13


Consensus pattern (9 bp):   
CCACCAGTG

Left flanking sequence: Indices 44886 -- 45385
AAATGGTGGCCCCACTGGAGATGCGCTGGAGCGTCAAAAGGATTGGCGGTTGCCGTCCCTCGTAC
TTGGTTTGTGGTGCTTGGCGATCCTTTGTGTAGTTTTGTGCCGCATAAACAATACGGGAGCCGTC
TGGAGCGGTCGTGGAGCCGTCCCGTGGAGCCGTCCCGTGGAGGGGGCACAGGCGGGGAGTGGCTT
ACGGAAATGCGCTATCTCTTTACGGTGTGCCATTCGTTGGGTCCCATGGGCTTAGACGATGGCGC
ACGATGGCTTACGTGGGCTTACGTTGTGTTACGTTGGCTTACGAATGGCTTACGACATTGGTGCT
TTATTCGCACAAAACGAAAACAATGCGTCGTGGGTGGTCCGCGAAGGGAGGCCAAAACGAGTGTT
GGGACCGGAGTAGCGTGGTTGATAAGAGTAGAGAAAATGTTTTGTAGCCCTATAGTCACACGAGG
GCAAGTCTCGCGGGACTACGAGAAATGTAACCGCCATTGTGGTGC


Right flanking sequence: Indices 45416 -- 45915
CACCTATATGGTAACCACATTGGTGAATTTAGCGAACCTGTCAAAGTGTTTAAAATGTTTGCAAT
GTTTACAATGTTTAATGCTTACTAACCTCACATCAGCGTCCACTTGCATAAACCACTCGCGAGCC
CAGTCCCAACATCCCTAGATCTCTCTGTCCGATCGGACCATGCGTCATGCACGTAATAGGCCCCA
TGGCTTAATGAGCCCATTGTGCCCGTTTAGTAGTAGCGAGACAACCACCAGCCACACTGGCTGCT
CCAGAGCCACCGGCACTCTCTCGCAACCCGGGACCACCCCCACCTCGCACCCAAACCGCCTCGTC
TGGCACCATCGCCGGGTGCATATTATCACCCCATTTATGCGGGGCGACCAACATTTCGACACACC
CTGACCCGCGAGCCAACGATGTCCGAACAGACCCGCCACACCCACCAATTGACCGTTGCAGCCGA
CGGGAAGGAGCACCCCGTCACCGTGACCTGGCTCACCACCGAGGT



Found at i:45418 original size:10 final size:10

Alignment explanation


    Indices: 45382--45419  Score: 60
    Period size: 10  Copynumber: 3.9  Consensus size: 10

      45372 CGCCATTGTG

                      
      45382 GTGCCCACCA
          1 GTGCCCACCA

                      
      45392 GTG-CCACCA
          1 GTGCCCACCA

               *      
      45401 GTGTCCACCA
          1 GTGCCCACCA

                     
      45411 GTGCCCACC
          1 GTGCCCACC

      45420 TATATGGTAA


Statistics
Matches: 26,  Mismatches: 1, Indels: 2
        0.90            0.03        0.07

Matches are distributed among these distances:
   9    9  0.35
  10   17  0.65

ACGTcount: A:0.18, C:0.47, G:0.21, T:0.13


Consensus pattern (10 bp):   
GTGCCCACCA

Left flanking sequence: Indices 44882 -- 45381
CAACAAATGGTGGCCCCACTGGAGATGCGCTGGAGCGTCAAAAGGATTGGCGGTTGCCGTCCCTC
GTACTTGGTTTGTGGTGCTTGGCGATCCTTTGTGTAGTTTTGTGCCGCATAAACAATACGGGAGC
CGTCTGGAGCGGTCGTGGAGCCGTCCCGTGGAGCCGTCCCGTGGAGGGGGCACAGGCGGGGAGTG
GCTTACGGAAATGCGCTATCTCTTTACGGTGTGCCATTCGTTGGGTCCCATGGGCTTAGACGATG
GCGCACGATGGCTTACGTGGGCTTACGTTGTGTTACGTTGGCTTACGAATGGCTTACGACATTGG
TGCTTTATTCGCACAAAACGAAAACAATGCGTCGTGGGTGGTCCGCGAAGGGAGGCCAAAACGAG
TGTTGGGACCGGAGTAGCGTGGTTGATAAGAGTAGAGAAAATGTTTTGTAGCCCTATAGTCACAC
GAGGGCAAGTCTCGCGGGACTACGAGAAATGTAACCGCCATTGTG


Right flanking sequence: Indices 45420 -- 45919
TATATGGTAACCACATTGGTGAATTTAGCGAACCTGTCAAAGTGTTTAAAATGTTTGCAATGTTT
ACAATGTTTAATGCTTACTAACCTCACATCAGCGTCCACTTGCATAAACCACTCGCGAGCCCAGT
CCCAACATCCCTAGATCTCTCTGTCCGATCGGACCATGCGTCATGCACGTAATAGGCCCCATGGC
TTAATGAGCCCATTGTGCCCGTTTAGTAGTAGCGAGACAACCACCAGCCACACTGGCTGCTCCAG
AGCCACCGGCACTCTCTCGCAACCCGGGACCACCCCCACCTCGCACCCAAACCGCCTCGTCTGGC
ACCATCGCCGGGTGCATATTATCACCCCATTTATGCGGGGCGACCAACATTTCGACACACCCTGA
CCCGCGAGCCAACGATGTCCGAACAGACCCGCCACACCCACCAATTGACCGTTGCAGCCGACGGG
AAGGAGCACCCCGTCACCGTGACCTGGCTCACCACCGAGGTGGCC



Found at i:46502 original size:10 final size:10

Alignment explanation


    Indices: 46453--46514  Score: 65
    Period size: 10  Copynumber: 6.4  Consensus size: 10

      46443 CCTATGGGAG

                 *    
      46453 CTAGGCGAGA
          1 CTAGGAGAGA

                    * 
      46463 CTAGG-GAAA
          1 CTAGGAGAGA

                    * 
      46472 CTAGGAGACA
          1 CTAGGAGAGA

                 *    
      46482 CT-GGGGAGA
          1 CTAGGAGAGA

              *       
      46491 CTTGGAGAGA
          1 CTAGGAGAGA

                      
      46501 CTAGGAGAGA
          1 CTAGGAGAGA

                
      46511 CTAG
          1 CTAG

      46515 AAACTAGGGG


Statistics
Matches: 44,  Mismatches: 6, Indels: 4
        0.81            0.11        0.07

Matches are distributed among these distances:
   9   15  0.34
  10   29  0.66

ACGTcount: A:0.34, C:0.15, G:0.39, T:0.13


Consensus pattern (10 bp):   
CTAGGAGAGA

Left flanking sequence: Indices 45953 -- 46452
CAGCCCAGTTTCTTCCGCCATCCTGAGTTCACCGTAGCCATCGTGGGCGGAGACCGGGCCCAGGC
GCGGAACACGATGGAAAAGCTCAGTCGGGGCGCCAGTGCGACTCTCGGCAAGCTCGAGGTGGGGC
CCGACGCCGAGGTGGCGTTTGTGCCGCCCGAGCCCGTGTACTTCCCCCACTATACCGTAGACTGC
GTGGAAATCGATGTTGGCGACCTTGCCGAGGCGTCGGCAATGGAGCTGGCGGTGTACAAGGCGCT
CGTGCTCACCGAGACCCAGTGGCCGCTCGTGTTTTCGGGCCACCAGCAGTTCTCGCTCACCGAGG
TGTACGAGGGGTTCAAGTCGCGACGCCGGGTCAGCGACAGCCACACGCTGATGCAGTGGGCGATG
CGGGACGCCCACGAGTTCACGGCTGACCTCTTGGAGCACCCGGTGTCGAGCCTCAAGTGCGAGGA
CTTGTTTAAGTAGGGAGGAGAGGTAAAAAGGTAAGCCTATGGGAG


Right flanking sequence: Indices 46515 -- 47014
AAACTAGGGGGTATACAAACTGACAATACTAGTTAATCAACAATGGAGACTTGTGTAGGGGATAT
CACTAGGATTATTTGACATATTTTGTTACATTTCCACACATTTTCTACAAAAGACATAAGAGAGG
TGAAAGATTTGGTAGGATATAACGCATTGAGAAGGCATTGAGAAGGCATTGAGAAGGCGTTGAGA
AGGCATTGGGAAACAAGGCGTATGGGGGTGGTAGTGGCATATATCCAGAGTCAGGGGTGCCTACA
TGCTGTGGACAAGTGATACTATAAGCGAGTCGTTATCACGGCAGATAGGTATGCATGACAATGCA
ACGTCTTGACAGGGGTGTGATGGGTCAATTGAGTAGTTCAATTGACTCATTGCCAAGTGGTGTGG
TGCTTGTGGTGCTGGTTATTGTCTCATTTACCTTCCGCTGGCCCCGCTTTATTCACATGTGATCG
GCTCTTTTGATTGAGTCCAACCCTAATAGTTGTGATCATATCTCT



Found at i:46684 original size:11 final size:11

Alignment explanation


    Indices: 46668--46717  Score: 91
    Period size: 11  Copynumber: 4.5  Consensus size: 11

      46658 AGGATATAAC

                       
      46668 GCATTGAGAAG
          1 GCATTGAGAAG

                       
      46679 GCATTGAGAAG
          1 GCATTGAGAAG

                       
      46690 GCATTGAGAAG
          1 GCATTGAGAAG

              *        
      46701 GCGTTGAGAAG
          1 GCATTGAGAAG

                  
      46712 GCATTG
          1 GCATTG

      46718 GGAAACAAGG


Statistics
Matches: 37,  Mismatches: 2, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  11   37  1.00

ACGTcount: A:0.32, C:0.10, G:0.38, T:0.20


Consensus pattern (11 bp):   
GCATTGAGAAG

Left flanking sequence: Indices 46168 -- 46667
CCTTGCCGAGGCGTCGGCAATGGAGCTGGCGGTGTACAAGGCGCTCGTGCTCACCGAGACCCAGT
GGCCGCTCGTGTTTTCGGGCCACCAGCAGTTCTCGCTCACCGAGGTGTACGAGGGGTTCAAGTCG
CGACGCCGGGTCAGCGACAGCCACACGCTGATGCAGTGGGCGATGCGGGACGCCCACGAGTTCAC
GGCTGACCTCTTGGAGCACCCGGTGTCGAGCCTCAAGTGCGAGGACTTGTTTAAGTAGGGAGGAG
AGGTAAAAAGGTAAGCCTATGGGAGCTAGGCGAGACTAGGGAAACTAGGAGACACTGGGGAGACT
TGGAGAGACTAGGAGAGACTAGAAACTAGGGGGTATACAAACTGACAATACTAGTTAATCAACAA
TGGAGACTTGTGTAGGGGATATCACTAGGATTATTTGACATATTTTGTTACATTTCCACACATTT
TCTACAAAAGACATAAGAGAGGTGAAAGATTTGGTAGGATATAAC


Right flanking sequence: Indices 46718 -- 47217
GGAAACAAGGCGTATGGGGGTGGTAGTGGCATATATCCAGAGTCAGGGGTGCCTACATGCTGTGG
ACAAGTGATACTATAAGCGAGTCGTTATCACGGCAGATAGGTATGCATGACAATGCAACGTCTTG
ACAGGGGTGTGATGGGTCAATTGAGTAGTTCAATTGACTCATTGCCAAGTGGTGTGGTGCTTGTG
GTGCTGGTTATTGTCTCATTTACCTTCCGCTGGCCCCGCTTTATTCACATGTGATCGGCTCTTTT
GATTGAGTCCAACCCTAATAGTTGTGATCATATCTCTGAATACGCCCAAAACTCCAATCAAAACA
ACGATTACGACTCCACCGCCTCCCTACCAACTCTATCTCGCCACAAGCACCCCTTTCTCACCTGC
TGCTACCCGCCCTCGTAAATCAGTGGCCGTCTCAATTAGGAAATGTGATGAGACCACCACCCACT
GGGCCCTTCCACTGGGCACTCCCCAGCCCACTGCCCACCAGCCTC



Found at i:50172 original size:18 final size:18

Alignment explanation


    Indices: 50151--50191  Score: 82
    Period size: 18  Copynumber: 2.3  Consensus size: 18

      50141 GAATACCATA

                              
      50151 TGGTCTTACCACACCAAC
          1 TGGTCTTACCACACCAAC

                              
      50169 TGGTCTTACCACACCAAC
          1 TGGTCTTACCACACCAAC

                 
      50187 TGGTC
          1 TGGTC

      50192 CTCCAAATCA


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  18   23  1.00

ACGTcount: A:0.24, C:0.37, G:0.15, T:0.24


Consensus pattern (18 bp):   
TGGTCTTACCACACCAAC

Left flanking sequence: Indices 49651 -- 50150
CTAGTTTTGAAGAACTATGGAGTCCGTAGACCCAATTCTACTGGGTACCAAAATGAAACCCTGAA
TAGCGGGCTGACCGGGAACGAAGAAGTGAAGATAGAACAACAAGCGTTTGCTGCCAGCAAGAGTA
AATAGACATTTGTTCAGATGAATCTTCTGAATTTGCTGAGATTCCATTCAGGTGACAGCTTTTAA
TGTATTTTCTGGAAATAGGTCCCATCACTGTAGTTACAGAGCGAATCCAGGTAGTGCTCTGAACT
GATCAAACCCACAATGGAGCCCAACCGAAGACACCCTTGCAAAATTCAAGACGACGAAACGGTGG
TGGCAGTATTTACACTCAAAAGAGGGCTCTGAAACTACAGGCTCCCGAAACTAGGTTTCTGTACC
TTCAGGCTTCTAAATCTATTGAAAATCATTTATTCAAACTCCCAGGGTATAAGCTGTAGTCGCTC
GCAGAGAACCAACCCATACATTCACTTCAATTCGTGAATACCATA


Right flanking sequence: Indices 50192 -- 50691
CTCCAAATCAAGCATTTATTAGTCTAACAGTTAATCAACTCGCCCAAGAACAGCGCAGCCTCGCC
CCGGGCCTCCGCCCGCATCAACAGCTCCCCAATCAAGAACCCGTCGACCCCCTCCTTCTTGTAGC
TGGCCACGTCGTCCACAGCCAGGATCCCCAGCAACGCCAACAACAACACCGGCCCGTCGCGCCCG
TTGTTGGTCTTGGAGTCCTCCACCAAGTTGGTGGTGGTGGCCAAGTCCACGTCAAAGTTGGTCAA
GTTGCGGTTGTTAACCCCAAGCACGAGCGGCTCGCGGGTCTGGCCGTCCACCGTCAACGCAAGCG
CGGTCTTCAACTCGGCAGCGTTGTTGATCTCCACAAGCGGCACCATCCCAAGCTGGTGGCAGTAG
CTGTAGAGCTCCTGGAGCTCGGCCTGGGGCAACATCTTGACAATGAGCAACACGGTGTCCGCGCC
CGCAAGCCGGGCCTCGGCAATCTGGTACTTGTTGAAGATGAACTC



Found at i:51769 original size:7 final size:7

Alignment explanation


    Indices: 51757--51791  Score: 52
    Period size: 7  Copynumber: 4.7  Consensus size: 7

      51747 CGGTCGTCAT

                   
      51757 GGTGGTG
          1 GGTGGTG

                   
      51764 GGTGGTG
          1 GGTGGTG

                   
      51771 GGTGGTG
          1 GGTGGTG

                     
      51778 GGTTGGATG
          1 GG-TGG-TG

                 
      51787 GGTGG
          1 GGTGG

      51792 GTCGGTTGGG


Statistics
Matches: 26,  Mismatches: 0, Indels: 3
        0.90            0.00        0.10

Matches are distributed among these distances:
   7   16  0.62
   8    6  0.23
   9    4  0.15

ACGTcount: A:0.03, C:0.00, G:0.69, T:0.29


Consensus pattern (7 bp):   
GGTGGTG

Left flanking sequence: Indices 51257 -- 51756
TGTCTCACACCCATGATGATCTCGGGGTTGGTCTCGGTGGTGGCCGTCACCTCCAACTCCTGGGG
AAGCGTGCCCTTGGTGCCCGCCAACGAGTGGTACCGGGTCACAGCCACCAGCTGGGGCACCCCTG
CGAACATCCCGCGGTTGTCGTGCTTGATGGTGGTGGTCTTGCCGTGGACGATCTCGCCGGCGTAG
TCGACATTTCCCCCAAAAACGTCAAAGATGCACTGGAGGCCCATACACACGCCAAAGATGGGCTT
CTTGCCCTTGTAGTGGGCAATGACGTCTCTGCTGATGCCCAGGTCGGTGGTGGGGTGGCCGGGAC
CCGGAGACACGAACAAAATGTCCGGGTTGAGGGCGTCGAGCTCGGCCAAGGTGATCTGGTCGTTG
CGGAACACGTCCACGCGGCCACAGCGGGGCAGCTGGCAGAGGAACTGGTAGAGGTTCCAAGTGAA
CGAGTCGTAGTTGTCGATCATGACGACATGGCGGCCGGTCGTCAT


Right flanking sequence: Indices 51792 -- 52291
GTCGGTTGGGATCGGGTGAATTTTTCAGTGAGTCAGAGTGCGAAGGGAAGGAGACGGTTGGGGTG
GGAAAAGGGTGGGAAGGGAGAGGGTAGTGGAGGTGGGGAAGGGTATGGGGGTATAGTGGGGAGAG
GTGGGGTTTTGATTTATTTTTATTTTTCGTTTTTGGGTGTGGCTAGGGTGTTTTATCGGTGGTTG
TGTGGTGGTGACTCAAGGTTATTATGGGAAAAGAATAGGTCCAGAATAGAGTGTGATATTTACAT
GAGGCGGGGAGCGGTGAAAGAAAGGAGGGGTGGATAGCGGTGGATAAGAGGTGGGTAATGGAGTG
GGAGGGGGGTGGGGGTGTTTGGAGGCGGTTTGATTTTGGTTTAGTGTGGTTTATTGGCATGGTTT
GTTGGCGTGGTTTGTTGGCGTGTGGGTAGCTTATCGGGTTGGCCCGGCTGCGAAGGCGGTCAGGT
AGTGAGAAAAGATGGATGGAGAGTAGGGAAGTGAGGGTACCCAGA



Found at i:52201 original size:13 final size:13

Alignment explanation


    Indices: 52162--52203  Score: 66
    Period size: 13  Copynumber: 3.2  Consensus size: 13

      52152 TTGGTTTAGT

                   *     
      52162 GTGGTTTATTGGC
          1 GTGGTTTGTTGGC

            *            
      52175 ATGGTTTGTTGGC
          1 GTGGTTTGTTGGC

                         
      52188 GTGGTTTGTTGGC
          1 GTGGTTTGTTGGC

               
      52201 GTG
          1 GTG

      52204 TGGGTAGCTT


Statistics
Matches: 26,  Mismatches: 3, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  13   26  1.00

ACGTcount: A:0.05, C:0.07, G:0.43, T:0.45


Consensus pattern (13 bp):   
GTGGTTTGTTGGC

Left flanking sequence: Indices 51662 -- 52161
CGGCCACAGCGGGGCAGCTGGCAGAGGAACTGGTAGAGGTTCCAAGTGAACGAGTCGTAGTTGTC
GATCATGACGACATGGCGGCCGGTCGTCATGGTGGTGGGTGGTGGGTGGTGGGTTGGATGGGTGG
GTCGGTTGGGATCGGGTGAATTTTTCAGTGAGTCAGAGTGCGAAGGGAAGGAGACGGTTGGGGTG
GGAAAAGGGTGGGAAGGGAGAGGGTAGTGGAGGTGGGGAAGGGTATGGGGGTATAGTGGGGAGAG
GTGGGGTTTTGATTTATTTTTATTTTTCGTTTTTGGGTGTGGCTAGGGTGTTTTATCGGTGGTTG
TGTGGTGGTGACTCAAGGTTATTATGGGAAAAGAATAGGTCCAGAATAGAGTGTGATATTTACAT
GAGGCGGGGAGCGGTGAAAGAAAGGAGGGGTGGATAGCGGTGGATAAGAGGTGGGTAATGGAGTG
GGAGGGGGGTGGGGGTGTTTGGAGGCGGTTTGATTTTGGTTTAGT


Right flanking sequence: Indices 52204 -- 52703
TGGGTAGCTTATCGGGTTGGCCCGGCTGCGAAGGCGGTCAGGTAGTGAGAAAAGATGGATGGAGA
GTAGGGAAGTGAGGGTACCCAGAGCGATGGGAGGGGTATGGAGTGTGTAGTTGGTAGCTCAACAC
TTGGGAAATGGGAGAAAGCGGGAAATGGTAAAAACTGTGACTAGAATAGCACCAGTAGTAAACTA
GTCACTCTACGGTACCACATCTATGACGAACTACACGAACTAATCAACCACTTTACACACAAATA
AGCGTTGGGGGGTCTGGGGGGGCGCCGCTTGCGGCCCCCCCAGCTAGAGTGAGTGGTAGTCTCGT
CCGTTACTAGCTGTAGTGGTCGTCTGACCGGTCGCACTGACCGGTCGCACTGAGACCACACGAGA
CGCGATAGGACCCACCACACGGCCCAAAACCGTCAGTTCTCACTAAGATAAGGCTCCGTTTCTTC
TCTAAACACCGTTTACATTCACCCTGTAGACTTCAGTTCCCCTTC



Found at i:52570 original size:13 final size:13

Alignment explanation


    Indices: 52552--52581  Score: 60
    Period size: 13  Copynumber: 2.3  Consensus size: 13

      52542 TAGTGGTCGT

                         
      52552 CTGACCGGTCGCA
          1 CTGACCGGTCGCA

                         
      52565 CTGACCGGTCGCA
          1 CTGACCGGTCGCA

                
      52578 CTGA
          1 CTGA

      52582 GACCACACGA


Statistics
Matches: 17,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   17  1.00

ACGTcount: A:0.17, C:0.37, G:0.30, T:0.17


Consensus pattern (13 bp):   
CTGACCGGTCGCA

Left flanking sequence: Indices 52052 -- 52551
GAGGCGGGGAGCGGTGAAAGAAAGGAGGGGTGGATAGCGGTGGATAAGAGGTGGGTAATGGAGTG
GGAGGGGGGTGGGGGTGTTTGGAGGCGGTTTGATTTTGGTTTAGTGTGGTTTATTGGCATGGTTT
GTTGGCGTGGTTTGTTGGCGTGTGGGTAGCTTATCGGGTTGGCCCGGCTGCGAAGGCGGTCAGGT
AGTGAGAAAAGATGGATGGAGAGTAGGGAAGTGAGGGTACCCAGAGCGATGGGAGGGGTATGGAG
TGTGTAGTTGGTAGCTCAACACTTGGGAAATGGGAGAAAGCGGGAAATGGTAAAAACTGTGACTA
GAATAGCACCAGTAGTAAACTAGTCACTCTACGGTACCACATCTATGACGAACTACACGAACTAA
TCAACCACTTTACACACAAATAAGCGTTGGGGGGTCTGGGGGGGCGCCGCTTGCGGCCCCCCCAG
CTAGAGTGAGTGGTAGTCTCGTCCGTTACTAGCTGTAGTGGTCGT


Right flanking sequence: Indices 52582 -- 53081
GACCACACGAGACGCGATAGGACCCACCACACGGCCCAAAACCGTCAGTTCTCACTAAGATAAGG
CTCCGTTTCTTCTCTAAACACCGTTTACATTCACCCTGTAGACTTCAGTTCCCCTTCTCTACGCT
ACCCTCCATTACCCGCCCCTTATCCACCTGGCCTACACACACTACCTCCACCACTACCCCTGAAC
CACCCACGAAACCCCCAAAAACCACCACGAAACCCCCAAAAACCACCTCCACAACCACCCCACAC
CCCACTTCACCCACCAACCCTCCCCAACCTGTTCCCCTTTACACCCCTTTTCCTTCTTTTCTTTC
TTCTTCGCGTCCTTTCTTTCCTCGCATTCCCACCGCTCGCTCGCTCGCACTCGCACAAATCACCT
CATCGCATCTCATCGCATCTCTATACCCCACCATGAGAGTCAAAAAGCCCACGTCCAAGCGTGTA
GGGACCAAGATGCGTGAGGGCATCAAGAAGAAGGCGGCGGCCCAG



Found at i:52802 original size:22 final size:22

Alignment explanation


    Indices: 52774--52823  Score: 93
    Period size: 21  Copynumber: 2.3  Consensus size: 22

      52764 ACTACCCCTG

                                  
      52774 AACCACCCACGAAACCCCCAAA
          1 AACCACCCACGAAACCCCCAAA

                                  
      52796 AACCA-CCACGAAACCCCCAAA
          1 AACCACCCACGAAACCCCCAAA

                   
      52817 AACCACC
          1 AACCACC

      52824 TCCACAACCA


Statistics
Matches: 27,  Mismatches: 0, Indels: 2
        0.93            0.00        0.07

Matches are distributed among these distances:
  21   21  0.78
  22    6  0.22

ACGTcount: A:0.46, C:0.50, G:0.04, T:0.00


Consensus pattern (22 bp):   
AACCACCCACGAAACCCCCAAA

Left flanking sequence: Indices 52274 -- 52773
GAAGTGAGGGTACCCAGAGCGATGGGAGGGGTATGGAGTGTGTAGTTGGTAGCTCAACACTTGGG
AAATGGGAGAAAGCGGGAAATGGTAAAAACTGTGACTAGAATAGCACCAGTAGTAAACTAGTCAC
TCTACGGTACCACATCTATGACGAACTACACGAACTAATCAACCACTTTACACACAAATAAGCGT
TGGGGGGTCTGGGGGGGCGCCGCTTGCGGCCCCCCCAGCTAGAGTGAGTGGTAGTCTCGTCCGTT
ACTAGCTGTAGTGGTCGTCTGACCGGTCGCACTGACCGGTCGCACTGAGACCACACGAGACGCGA
TAGGACCCACCACACGGCCCAAAACCGTCAGTTCTCACTAAGATAAGGCTCCGTTTCTTCTCTAA
ACACCGTTTACATTCACCCTGTAGACTTCAGTTCCCCTTCTCTACGCTACCCTCCATTACCCGCC
CCTTATCCACCTGGCCTACACACACTACCTCCACCACTACCCCTG


Right flanking sequence: Indices 52824 -- 53323
TCCACAACCACCCCACACCCCACTTCACCCACCAACCCTCCCCAACCTGTTCCCCTTTACACCCC
TTTTCCTTCTTTTCTTTCTTCTTCGCGTCCTTTCTTTCCTCGCATTCCCACCGCTCGCTCGCTCG
CACTCGCACAAATCACCTCATCGCATCTCATCGCATCTCTATACCCCACCATGAGAGTCAAAAAG
CCCACGTCCAAGCGTGTAGGGACCAAGATGCGTGAGGGCATCAAGAAGAAGGCGGCGGCCCAGCT
CCGCAAGAACCGCAAACTCCTGAAAAAGGACCCCACGTGGAAGTCCCGCAAGCCGAAGGAGATCG
GGATCCCGGCGCTGTACCCGTTCAAGGACAAGCTCCTTGCTGAATTGGAGCAGCAGAAGGAAGAG
GAGGCGGCCCGCAAGGAGCGCAACCGCCAGTTGCGGCGCGAGGCCGCGATGGAGGCCGGCGAGGA
CGCCCCGATGGAGGAGGACGACGACGACGGGGCCGGCGGGCTTGC



Found at i:52838 original size:24 final size:21

Alignment explanation


    Indices: 52774--52832  Score: 73
    Period size: 21  Copynumber: 2.7  Consensus size: 21

      52764 ACTACCCCTG

                      *           
      52774 AACCACCCACGAAACCCCCAAA
          1 AACCA-CCACCAAACCCCCAAA

                     *           
      52796 AACCACCACGAAACCCCCAAA
          1 AACCACCACCAAACCCCCAAA

                   *        
      52817 AACCACCTCCACAACC
          1 AACCACCACCA-AACC

      52833 ACCCCACACC


Statistics
Matches: 34,  Mismatches: 2, Indels: 2
        0.89            0.05        0.05

Matches are distributed among these distances:
  21   25  0.74
  22    9  0.26

ACGTcount: A:0.44, C:0.51, G:0.03, T:0.02


Consensus pattern (21 bp):   
AACCACCACCAAACCCCCAAA

Left flanking sequence: Indices 52274 -- 52773
GAAGTGAGGGTACCCAGAGCGATGGGAGGGGTATGGAGTGTGTAGTTGGTAGCTCAACACTTGGG
AAATGGGAGAAAGCGGGAAATGGTAAAAACTGTGACTAGAATAGCACCAGTAGTAAACTAGTCAC
TCTACGGTACCACATCTATGACGAACTACACGAACTAATCAACCACTTTACACACAAATAAGCGT
TGGGGGGTCTGGGGGGGCGCCGCTTGCGGCCCCCCCAGCTAGAGTGAGTGGTAGTCTCGTCCGTT
ACTAGCTGTAGTGGTCGTCTGACCGGTCGCACTGACCGGTCGCACTGAGACCACACGAGACGCGA
TAGGACCCACCACACGGCCCAAAACCGTCAGTTCTCACTAAGATAAGGCTCCGTTTCTTCTCTAA
ACACCGTTTACATTCACCCTGTAGACTTCAGTTCCCCTTCTCTACGCTACCCTCCATTACCCGCC
CCTTATCCACCTGGCCTACACACACTACCTCCACCACTACCCCTG


Right flanking sequence: Indices 52833 -- 53332
ACCCCACACCCCACTTCACCCACCAACCCTCCCCAACCTGTTCCCCTTTACACCCCTTTTCCTTC
TTTTCTTTCTTCTTCGCGTCCTTTCTTTCCTCGCATTCCCACCGCTCGCTCGCTCGCACTCGCAC
AAATCACCTCATCGCATCTCATCGCATCTCTATACCCCACCATGAGAGTCAAAAAGCCCACGTCC
AAGCGTGTAGGGACCAAGATGCGTGAGGGCATCAAGAAGAAGGCGGCGGCCCAGCTCCGCAAGAA
CCGCAAACTCCTGAAAAAGGACCCCACGTGGAAGTCCCGCAAGCCGAAGGAGATCGGGATCCCGG
CGCTGTACCCGTTCAAGGACAAGCTCCTTGCTGAATTGGAGCAGCAGAAGGAAGAGGAGGCGGCC
CGCAAGGAGCGCAACCGCCAGTTGCGGCGCGAGGCCGCGATGGAGGCCGGCGAGGACGCCCCGAT
GGAGGAGGACGACGACGACGGGGCCGGCGGGCTTGCGGCGCTCTT



Found at i:55095 original size:14 final size:16

Alignment explanation


    Indices: 55055--55095  Score: 61
    Period size: 15  Copynumber: 2.8  Consensus size: 16

      55045 AAGAATCATT

                            
      55055 AACCGTACAA-TCACA
          1 AACCGTACAATTCACA

                            
      55070 AACCGTACAATTCAC-
          1 AACCGTACAATTCACA

                        
      55085 AACCG-ACAATT
          1 AACCGTACAATT

      55096 TAGAACCTTA


Statistics
Matches: 25,  Mismatches: 0, Indels: 3
        0.89            0.00        0.11

Matches are distributed among these distances:
  14    6  0.24
  15   15  0.60
  16    4  0.16

ACGTcount: A:0.44, C:0.32, G:0.07, T:0.17


Consensus pattern (16 bp):   
AACCGTACAATTCACA

Left flanking sequence: Indices 54555 -- 55054
TAGGGGATATTTGGGTGGTCTGAGAGAAAAGAAAGTGGTGTAGATATTATAGTTTTCTACGGAGA
GAGGAAGTCGTGGACTGGTTAGGGGATAATTGGGTGGTCTAAGGGGAAAGGAAGTGGTGTAGGTG
GGCTCGTTGGGGGTTATTATGGCGTTCTACGGTGAAAGGCAGTGGTGTAGGTGGTGGATGGTCGT
GGTTTATTATGGCATTCTACGGAGAAAGGAAGTGGTGTAGATGGGTATGGGTTGGGGTTATCTGG
GTAGTATATCACGGGTGTTCTATTGTTTAAATGTCTGCGGACAGTGTTGATTTTGTGCTGAGTCT
GAATTGTTTCAAAGAAGGTCTGTCACTTTTGGAGGGAAAGCCGATCCAAGGGTGGATGTTGAAAG
TGAAAGGAAGAAAACCACCAATTGATAACCGACAATTAATAGCAGACAATCACAAACAATACTAT
TCATAACCGACAATTGAAACCGTACAATTAATACGAAGAATCATT


Right flanking sequence: Indices 55096 -- 55595
TAGAACCTTACAAATGTTAACCGACAATTGGTAACCAAAAAACAGTGAATCTTTTAATGTACATT
CAGTAATCGTGAATCACTAACCGTACAATTAAGCCGTGAATCACTAACTGTACAATTCATAACCC
CCAATCACTAACCCTACTACCAATAACCAACACTCACTAACCGTACTACCAATCCGTACAATCAC
AACAATACATTTAAAGCAGACATTATCTTTAATCGCGTCCACCAGATTCTCCAGCCGTGCTGTCA
ATCTTGCATGCCAGACCATCTCACCAGCCACATTTGCGAGGCACCACCACACTTCACCGCCTTCA
CACACGATTGCTATTTGCACATGCCAAAACCCGCCCTCGTAAGTCGTACGGCTCCTGCTCATTCT
GCCTGTCGTACGTGTCTCACAGTAAGACCAACGCACCTCCATGCACGGGCAGTGACATATGGCAA
ACACCGGCCAAACAAAGCGACTCACGCATGCTTTCCACCCCCCAC



Found at i:59167 original size:10 final size:10

Alignment explanation


    Indices: 59152--59176  Score: 50
    Period size: 10  Copynumber: 2.5  Consensus size: 10

      59142 TTCACAGCCT

                      
      59152 GTGGGAATCC
          1 GTGGGAATCC

                      
      59162 GTGGGAATCC
          1 GTGGGAATCC

                 
      59172 GTGGG
          1 GTGGG

      59177 GGACAGCCGA


Statistics
Matches: 15,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  10   15  1.00

ACGTcount: A:0.16, C:0.16, G:0.48, T:0.20


Consensus pattern (10 bp):   
GTGGGAATCC

Left flanking sequence: Indices 58652 -- 59151
TAAATGTAAAATCTTTCGGCAGCTTGGCTTATAAAAAGTTCGCTGCGTGTATACAGGCCGCGAGT
TGGTCCAGGTGATTATTTTCAATGCACCTGGTTTCTTTTTGTTAGTCAGCTGGTCAGGCGACGTC
GCGAGGGGAAGCGGGTGGTGGCGCGGGGGTCTGGCGGTGGTTTGGCCGGGGTTGGTGGCGGCGGC
GTGTTTGGTGGGCGCGGCGGGAGGGTTTGCTTCCCCGCCTCGCTTGCGAGTGTTTTGGTTACTGC
TGCCAATTGGTCCGTGTCGGCGCACCTCTGCATGGCCTAGAAAATATTCCCAATCGGGTGTCGTT
GCGGTGGGGGTGGTCAGCCCGGATCGCGGTGCCTGGGCACGCTGGGGCCACAGCAATTGGTCCGG
CGGCGGTGGTGGGGTGCGCGTGGCGGTGTTCTGTCTTTCTTCGGGGTGGTCTGGTTGGTGGTGTG
TGGTGGGGGGCCGCATGCGACGGAGTTCCGCGCCATTCACAGCCT


Right flanking sequence: Indices 59177 -- 59676
GGACAGCCGAGGCTTGTGGGCCCGCGGTGGCTAGGGGTGGAGCGCCAGCGTAGGCGATGGCCCGC
TGCAGACGACATTCCGTGGTCACGGTGCGTGGGCAACAGTAGCCGACGAGGGCGCCACGGGTGGT
GGTGTGCCCGTGCACGCGCCACGGGGCCGCTGTTGCTGGTGGCTGACTACGGGGTTTACGCTACA
ATGTGGGCAACAAGGAATGTGGGCAATGGCAGTGGCGACCCCGCCTCCCCCGCCTCCTCCTGGAC
CCTGGCCTTCCATGCATACAACGGTCACCGATCCCCGAACCTTGTGGACATCCCCCAAACAGCGC
CCAAACCACAAACGACACGCACCCACCCCGAGCCGCCGGACCTCCAGTGACGACCTGCTCCCCTC
ATCGCCATCCGCCCCTATGCATGTGCACGGCTTACGTCAGACGACATGCGTATCTGTTGCACGTC
GGCAAAAGAACCGGTTGTTCAAAGTGTAATTCGACAGCAGCGCAC



Found at i:60570 original size:20 final size:21

Alignment explanation


    Indices: 60532--60571  Score: 57
    Period size: 20  Copynumber: 2.0  Consensus size: 21

      60522 TGGACGCCTG

                                 
      60532 CCAGAGTCAGAAGAGGTGGTA
          1 CCAGAGTCAGAAGAGGTGGTA

                                 
      60553 CCAGAGT-AGCAA-AGGTGGT
          1 CCAGAGTCAG-AAGAGGTGGT

      60572 GGGTGTGTAA


Statistics
Matches: 18,  Mismatches: 0, Indels: 3
        0.86            0.00        0.14

Matches are distributed among these distances:
  20    9  0.50
  21    9  0.50

ACGTcount: A:0.33, C:0.15, G:0.38, T:0.15


Consensus pattern (21 bp):   
CCAGAGTCAGAAGAGGTGGTA

Left flanking sequence: Indices 60032 -- 60531
CGGGTGCAGAAAGATGGGGGTCCGCGCGCATGGTCCGTGCGGGAATGCTGTCGCAACGATTGGTG
CCACGGTGGCGTCGTGGCGCATGGCACGCCCTAAGCCACGCAATCGTCGTCGAGACTAAAAGAGA
CAATAAAGACCCTGAGGAGGATCCGTTACGACGTGTGGACACACGGAGGACACACGAGGAGACAC
ACAGGGAAATGGCGGTGTAATTGTGCTACTGGTCTGCTTGGCCAGTGATGTAATCGGTGGTGTAA
TGGGACGGTGTCGCGAACCCCGGTCTTACCGGATTGGGCTAATTACGGAGATAGTGGTGTAGCGT
GGTGAACCCACGACATGGTTGCTAAATCGGGTTTACTTGCGGTGGTGGTGGTGTATGCATGGGTG
TGCCCCCGGGACGTGGGGGTCCTTTCGATACTCGTTGGCTGTCTCTCGTCGACCTGCTGGCGAAC
CCCGGGTTTTTCCAGGTACGGCTAATGGGTTGCTGTGGACGCCTG


Right flanking sequence: Indices 60572 -- 61071
GGGTGTGTAAGAGTAGCAACAGTGTCCAAGTAGCAGCAGTGTCCGAGTAGCAACAGTCCCTTTGT
CCTGCTCTAGGTGGGGGCTCTGGTGGGTTAAAATGTGAACATCTCTACACCGGGGTTTTCGGTAG
TCATACCCCATACGTACCCATACGTACAGACAGATCGTTGATATGACACACCGACCCCTGCCTAC
GCCACAGTAAACCACGAGACCTCCCAAATTCTCCACTTCTCGCCTTCTCCACGCCTTCGCCACAC
GTCCACACCAACCGCAACCGCCCAAGACCGCCCAGACCGCCTCCAAACCCCCGTCTTCCATTCCA
TTCCATTGCTGCGGTTGTGGCGCCACCGGCCTTTCATCGGGGTTCGCTGGTTACGAGCCCCACCG
CTTACTTCAACCCATCGCCAGAACTCGTACTACCACTACCCATGGAGATCCCCGTCGACATCGAG
GCCGTGGGCAACAGCTACACCGACAAGGTGGTGTTGCCCCAGCGG



Found at i:60603 original size:17 final size:17

Alignment explanation


    Indices: 60583--60628  Score: 74
    Period size: 17  Copynumber: 2.7  Consensus size: 17

      60573 GGTGTGTAAG

                             
      60583 AGTAGCAACAGTGTCCA
          1 AGTAGCAACAGTGTCCA

                   *        *
      60600 AGTAGCAGCAGTGTCCG
          1 AGTAGCAACAGTGTCCA

                        
      60617 AGTAGCAACAGT
          1 AGTAGCAACAGT

      60629 CCCTTTGTCC


Statistics
Matches: 26,  Mismatches: 3, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  17   26  1.00

ACGTcount: A:0.33, C:0.22, G:0.28, T:0.17


Consensus pattern (17 bp):   
AGTAGCAACAGTGTCCA

Left flanking sequence: Indices 60083 -- 60582
CGCAACGATTGGTGCCACGGTGGCGTCGTGGCGCATGGCACGCCCTAAGCCACGCAATCGTCGTC
GAGACTAAAAGAGACAATAAAGACCCTGAGGAGGATCCGTTACGACGTGTGGACACACGGAGGAC
ACACGAGGAGACACACAGGGAAATGGCGGTGTAATTGTGCTACTGGTCTGCTTGGCCAGTGATGT
AATCGGTGGTGTAATGGGACGGTGTCGCGAACCCCGGTCTTACCGGATTGGGCTAATTACGGAGA
TAGTGGTGTAGCGTGGTGAACCCACGACATGGTTGCTAAATCGGGTTTACTTGCGGTGGTGGTGG
TGTATGCATGGGTGTGCCCCCGGGACGTGGGGGTCCTTTCGATACTCGTTGGCTGTCTCTCGTCG
ACCTGCTGGCGAACCCCGGGTTTTTCCAGGTACGGCTAATGGGTTGCTGTGGACGCCTGCCAGAG
TCAGAAGAGGTGGTACCAGAGTAGCAAAGGTGGTGGGTGTGTAAG


Right flanking sequence: Indices 60629 -- 61128
CCCTTTGTCCTGCTCTAGGTGGGGGCTCTGGTGGGTTAAAATGTGAACATCTCTACACCGGGGTT
TTCGGTAGTCATACCCCATACGTACCCATACGTACAGACAGATCGTTGATATGACACACCGACCC
CTGCCTACGCCACAGTAAACCACGAGACCTCCCAAATTCTCCACTTCTCGCCTTCTCCACGCCTT
CGCCACACGTCCACACCAACCGCAACCGCCCAAGACCGCCCAGACCGCCTCCAAACCCCCGTCTT
CCATTCCATTCCATTGCTGCGGTTGTGGCGCCACCGGCCTTTCATCGGGGTTCGCTGGTTACGAG
CCCCACCGCTTACTTCAACCCATCGCCAGAACTCGTACTACCACTACCCATGGAGATCCCCGTCG
ACATCGAGGCCGTGGGCAACAGCTACACCGACAAGGTGGTGTTGCCCCAGCGGATTCTCGAGCAG
CTCGTGCAGAGCATCCCCGAAGACCAGCTTCCCCACCCGCTAATC



Found at i:62921 original size:21 final size:21

Alignment explanation


    Indices: 62887--62981  Score: 84
    Period size: 21  Copynumber: 4.6  Consensus size: 21

      62877 GTGTGTTATG

                   *        *    
      62887 TATTAATAT-ACGTAGGTATC
          1 TATTAATGTAACGTAGATATC

                 * *          * *
      62907 TATTAGTTTAACGTAGATGTG
          1 TATTAATGTAACGTAGATATC

                                 
      62928 TATTAATGTAACGTAGATATC
          1 TATTAATGTAACGTAGATATC

              *    *      *     *
      62949 TAGTAATATAACGTGGATATG
          1 TATTAATGTAACGTAGATATC

                   *    
      62970 TATTAATATAAC
          1 TATTAATGTAAC

      62982 TTGGTACAAT


Statistics
Matches: 60,  Mismatches: 14, Indels: 1
        0.80            0.19        0.01

Matches are distributed among these distances:
  20    7  0.12
  21   53  0.88

ACGTcount: A:0.37, C:0.07, G:0.17, T:0.39


Consensus pattern (21 bp):   
TATTAATGTAACGTAGATATC

Left flanking sequence: Indices 62387 -- 62886
ACCTGCTCTGCATCAACCGCGCTGGCGGGACCATGGGGCTCTGTGACCACTGCTTTGGCCCGCTC
TACCTGACCCAGCACGACCCCGACGGGGCCAAGTTGCGCAACCGGATCGAGCGGCGGTACGTGTT
GCAGCTCTCCAAAGGGTGTGGGCGAGCCCAGTGCCTGAACGAGTACTGCAAGACCGGGCAGCCCT
TCAGCGACAACATGGCCACGTATAAGAGTGTGTTGTTGCCGATGGTGCCGTCGGAGTTCCACTTT
TGCGTGGACGAGCTGATGGACAACAAGCGGGCGGTGGTGGAGGCGTACATCGCCGAGGCCAAGTA
CAAGCCGGAGATGATCTTGGAGGGGGCCAGCCGCGGCGGCGATCTTGGGCAGTGGTTGGCGAAGA
ACGCCGTCGCCGCGAACTAGCATAGCATAATGATTAATGGAAGGTAAGGTAGTGAGAGGTAGTGA
GTGGTTGGTGTTAATAGATTTTAGAATTGGCACTGGTGTGTTATG


Right flanking sequence: Indices 62982 -- 63481
TTGGTACAATTCACGCGACTAAGAATCAGCCCCAGAGGCCATCCTCCAGAAACAACCAAGTTAAC
ACCTGTCTCTAAATTAACTCACGACGCACACTTAAGGCACACTTTATTTTATCACCCCCGGGTTG
AGCCCTGAGACCAGATCTCGTGGAACCTGTCATTATGCACGGAAGGCGGGGACCATCGGAGGTAA
AAAATAAGATGGTCCGTCCCCAGCGATACCGCGACTTTTGCAACCAAGTAAAAAATAAAAGGTAA
GATTTGAATTTTTTCAGCTTTGTTCCCGTCACCGCCACATTTTAGTACTGTCACCATCCTGCTTT
TAATTCTATATACAACAACGCAGGTGCAACCGCCATGCAAGCCAAAGGACCAGCCACCAGTGCGA
GAGACCAGCTACCAGTGCGAGAGACCAGCTACCAGTGCGGAAGAGACCAGTTACCAACGCCAAAG
CTGTCTCCTAGCTAACCAGCTACAAGCCTAGCTAACCAGCTGTTA



Found at i:62949 original size:42 final size:42

Alignment explanation


    Indices: 62883--62981  Score: 128
    Period size: 42  Copynumber: 2.4  Consensus size: 42

      62873 ACTGGTGTGT

                                *      *  * *         
      62883 TATGTATTAATAT-ACGTAGGTATCTATTAGTTTAACGTAGA
          1 TATGTATTAATATAACGTAGATATCTAGTAATATAACGTAGA

             *         *                           *  
      62924 TGTGTATTAATGTAACGTAGATATCTAGTAATATAACGTGGA
          1 TATGTATTAATATAACGTAGATATCTAGTAATATAACGTAGA

                            
      62966 TATGTATTAATATAAC
          1 TATGTATTAATATAAC

      62982 TTGGTACAAT


Statistics
Matches: 48,  Mismatches: 9, Indels: 1
        0.83            0.16        0.02

Matches are distributed among these distances:
  41   11  0.23
  42   37  0.77

ACGTcount: A:0.36, C:0.07, G:0.17, T:0.39


Consensus pattern (42 bp):   
TATGTATTAATATAACGTAGATATCTAGTAATATAACGTAGA

Left flanking sequence: Indices 62383 -- 62882
CTGAACCTGCTCTGCATCAACCGCGCTGGCGGGACCATGGGGCTCTGTGACCACTGCTTTGGCCC
GCTCTACCTGACCCAGCACGACCCCGACGGGGCCAAGTTGCGCAACCGGATCGAGCGGCGGTACG
TGTTGCAGCTCTCCAAAGGGTGTGGGCGAGCCCAGTGCCTGAACGAGTACTGCAAGACCGGGCAG
CCCTTCAGCGACAACATGGCCACGTATAAGAGTGTGTTGTTGCCGATGGTGCCGTCGGAGTTCCA
CTTTTGCGTGGACGAGCTGATGGACAACAAGCGGGCGGTGGTGGAGGCGTACATCGCCGAGGCCA
AGTACAAGCCGGAGATGATCTTGGAGGGGGCCAGCCGCGGCGGCGATCTTGGGCAGTGGTTGGCG
AAGAACGCCGTCGCCGCGAACTAGCATAGCATAATGATTAATGGAAGGTAAGGTAGTGAGAGGTA
GTGAGTGGTTGGTGTTAATAGATTTTAGAATTGGCACTGGTGTGT


Right flanking sequence: Indices 62982 -- 63481
TTGGTACAATTCACGCGACTAAGAATCAGCCCCAGAGGCCATCCTCCAGAAACAACCAAGTTAAC
ACCTGTCTCTAAATTAACTCACGACGCACACTTAAGGCACACTTTATTTTATCACCCCCGGGTTG
AGCCCTGAGACCAGATCTCGTGGAACCTGTCATTATGCACGGAAGGCGGGGACCATCGGAGGTAA
AAAATAAGATGGTCCGTCCCCAGCGATACCGCGACTTTTGCAACCAAGTAAAAAATAAAAGGTAA
GATTTGAATTTTTTCAGCTTTGTTCCCGTCACCGCCACATTTTAGTACTGTCACCATCCTGCTTT
TAATTCTATATACAACAACGCAGGTGCAACCGCCATGCAAGCCAAAGGACCAGCCACCAGTGCGA
GAGACCAGCTACCAGTGCGAGAGACCAGCTACCAGTGCGGAAGAGACCAGTTACCAACGCCAAAG
CTGTCTCCTAGCTAACCAGCTACAAGCCTAGCTAACCAGCTGTTA



Found at i:63379 original size:20 final size:20

Alignment explanation


    Indices: 63354--63427  Score: 112
    Period size: 20  Copynumber: 3.6  Consensus size: 20

      63344 CAAGCCAAAG

                   *            
      63354 GACCAGCCACCAGTGCGAGA
          1 GACCAGCTACCAGTGCGAGA

                                
      63374 GACCAGCTACCAGTGCGAGA
          1 GACCAGCTACCAGTGCGAGA

                                  
      63394 GACCAGCTACCAGTGCGGAAGA
          1 GACCAGCTACCAGTGC-G-AGA

                  *     
      63416 GACCAGTTACCA
          1 GACCAGCTACCA

      63428 ACGCCAAAGC


Statistics
Matches: 50,  Mismatches: 2, Indels: 2
        0.93            0.04        0.04

Matches are distributed among these distances:
  20   35  0.70
  21    1  0.02
  22   14  0.28

ACGTcount: A:0.31, C:0.31, G:0.28, T:0.09


Consensus pattern (20 bp):   
GACCAGCTACCAGTGCGAGA

Left flanking sequence: Indices 62854 -- 63353
AATAGATTTTAGAATTGGCACTGGTGTGTTATGTATTAATATACGTAGGTATCTATTAGTTTAAC
GTAGATGTGTATTAATGTAACGTAGATATCTAGTAATATAACGTGGATATGTATTAATATAACTT
GGTACAATTCACGCGACTAAGAATCAGCCCCAGAGGCCATCCTCCAGAAACAACCAAGTTAACAC
CTGTCTCTAAATTAACTCACGACGCACACTTAAGGCACACTTTATTTTATCACCCCCGGGTTGAG
CCCTGAGACCAGATCTCGTGGAACCTGTCATTATGCACGGAAGGCGGGGACCATCGGAGGTAAAA
AATAAGATGGTCCGTCCCCAGCGATACCGCGACTTTTGCAACCAAGTAAAAAATAAAAGGTAAGA
TTTGAATTTTTTCAGCTTTGTTCCCGTCACCGCCACATTTTAGTACTGTCACCATCCTGCTTTTA
ATTCTATATACAACAACGCAGGTGCAACCGCCATGCAAGCCAAAG


Right flanking sequence: Indices 63428 -- 63927
ACGCCAAAGCTGTCTCCTAGCTAACCAGCTACAAGCCTAGCTAACCAGCTGTTAGCCTAGTTGAC
CAGCAAACCACTACCCAGTCAGTGGCACCCAGCCACTGGCACCCAGCCACTGGCACCCAGCCACC
ATGCTAATGCTAATTAATAAGGTTCATCACCTCGTCGGCCAATTCGTCCCGCGACTGTCCCGGCA
GCTCCGCCCACGCAGGCAGCGCCAGGAACCACGTCTCCTGGACCCGCGGCCCAAGCACGTAGTGG
CGGAAATGCGCCACCGCCTCCGAAACCCCGATATCCGTCACCAACATCGGGTCGACGTCGTGGGC
GGCCACCGCAGCAAACATCCACGCCTCGGCCGCCCGCGGGTCGTGCGCGTACATCCGGCCAAACA
CCCGGTCGAAGGCCCCGACGTAGAGCCCGACGATCTTGTTGTCGTCGGCGGAGAACGCGCTCAAG
AGCGGGGTTTCCGGGAGGTCTGCGAGCCTGAGCGCGGCCACCGCC



Found at i:63524 original size:14 final size:14

Alignment explanation


    Indices: 63505--63556  Score: 86
    Period size: 14  Copynumber: 3.7  Consensus size: 14

      63495 GCAAACCACT

                  *  *    
      63505 ACCCAGTCAGTGGC
          1 ACCCAGCCACTGGC

                          
      63519 ACCCAGCCACTGGC
          1 ACCCAGCCACTGGC

                          
      63533 ACCCAGCCACTGGC
          1 ACCCAGCCACTGGC

                      
      63547 ACCCAGCCAC
          1 ACCCAGCCAC

      63557 CATGCTAATG


Statistics
Matches: 36,  Mismatches: 2, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  14   36  1.00

ACGTcount: A:0.23, C:0.48, G:0.21, T:0.08


Consensus pattern (14 bp):   
ACCCAGCCACTGGC

Left flanking sequence: Indices 63005 -- 63504
AATCAGCCCCAGAGGCCATCCTCCAGAAACAACCAAGTTAACACCTGTCTCTAAATTAACTCACG
ACGCACACTTAAGGCACACTTTATTTTATCACCCCCGGGTTGAGCCCTGAGACCAGATCTCGTGG
AACCTGTCATTATGCACGGAAGGCGGGGACCATCGGAGGTAAAAAATAAGATGGTCCGTCCCCAG
CGATACCGCGACTTTTGCAACCAAGTAAAAAATAAAAGGTAAGATTTGAATTTTTTCAGCTTTGT
TCCCGTCACCGCCACATTTTAGTACTGTCACCATCCTGCTTTTAATTCTATATACAACAACGCAG
GTGCAACCGCCATGCAAGCCAAAGGACCAGCCACCAGTGCGAGAGACCAGCTACCAGTGCGAGAG
ACCAGCTACCAGTGCGGAAGAGACCAGTTACCAACGCCAAAGCTGTCTCCTAGCTAACCAGCTAC
AAGCCTAGCTAACCAGCTGTTAGCCTAGTTGACCAGCAAACCACT


Right flanking sequence: Indices 63557 -- 64056
CATGCTAATGCTAATTAATAAGGTTCATCACCTCGTCGGCCAATTCGTCCCGCGACTGTCCCGGC
AGCTCCGCCCACGCAGGCAGCGCCAGGAACCACGTCTCCTGGACCCGCGGCCCAAGCACGTAGTG
GCGGAAATGCGCCACCGCCTCCGAAACCCCGATATCCGTCACCAACATCGGGTCGACGTCGTGGG
CGGCCACCGCAGCAAACATCCACGCCTCGGCCGCCCGCGGGTCGTGCGCGTACATCCGGCCAAAC
ACCCGGTCGAAGGCCCCGACGTAGAGCCCGACGATCTTGTTGTCGTCGGCGGAGAACGCGCTCAA
GAGCGGGGTTTCCGGGAGGTCTGCGAGCCTGAGCGCGGCCACCGCCTGTTGGTAGGGCAGCTGGG
CGTCCTCCAGCTGTGTCGGGTCGTTGGCATAGAGCAACTGGGTGTGGAGCTGCGACCGGAAGGCG
GCGACGGTCTTGAACTTCGCCAAGAACTCGGGGTCGGCCCCGGGG



Found at i:64269 original size:18 final size:17

Alignment explanation


    Indices: 64248--64360  Score: 58
    Period size: 18  Copynumber: 7.3  Consensus size: 17

      64238 AGGAAGAGGA

                              
      64248 GGAGGGGAAGGACGTGTT
          1 GGAGGGGAAGGA-GTGTT

                            *
      64266 GGA-GGG-A-GAG-G-A
          1 GGAGGGGAAGGAGTGTT

                              
      64278 GGAGGGGAAGGAAGTGTT
          1 GGAGGGGAAGG-AGTGTT

                            *
      64296 GGA--GGAA-GAG-G-A
          1 GGAGGGGAAGGAGTGTT

                              
      64308 GGAGGGGAAGGACGTGTT
          1 GGAGGGGAAGGA-GTGTT

                            *
      64326 GGA-GGG-A-GAG-G-A
          1 GGAGGGGAAGGAGTGTT

                              
      64338 GGAGGGGAAGGAAGTGTT
          1 GGAGGGGAAGG-AGTGTT

                 
      64356 GGAGG
          1 GGAGG

      64361 AAGAGGAAGA


Statistics
Matches: 71,  Mismatches: 6, Indels: 36
        0.63            0.05        0.32

Matches are distributed among these distances:
  12    9  0.13
  13    9  0.13
  14   10  0.14
  15    9  0.13
  16   11  0.15
  17    9  0.13
  18   14  0.20

ACGTcount: A:0.28, C:0.02, G:0.59, T:0.11


Consensus pattern (17 bp):   
GGAGGGGAAGGAGTGTT

Left flanking sequence: Indices 63748 -- 64247
TGGGCGGCCACCGCAGCAAACATCCACGCCTCGGCCGCCCGCGGGTCGTGCGCGTACATCCGGCC
AAACACCCGGTCGAAGGCCCCGACGTAGAGCCCGACGATCTTGTTGTCGTCGGCGGAGAACGCGC
TCAAGAGCGGGGTTTCCGGGAGGTCTGCGAGCCTGAGCGCGGCCACCGCCTGTTGGTAGGGCAGC
TGGGCGTCCTCCAGCTGTGTCGGGTCGTTGGCATAGAGCAACTGGGTGTGGAGCTGCGACCGGAA
GGCGGCGACGGTCTTGAACTTCGCCAAGAACTCGGGGTCGGCCCCGGGGAGGTACCGCATCACGA
GGAGGTCGTACGAGAGCATCCCGTAGTCGCGGCCGGGCTCCGGGGTGCTCTGGCGGTTGGGGTGG
AAGAGCTGGCCGTCGCCGAAGCGGAGGGTGGCCTGGGACGCCTGGGAGAGCGCCCGGTCTTCGTG
AGAGGGGGAGGGGGACGAGGAGGGGGTAAGGTTGGAGGAAGAGGA


Right flanking sequence: Indices 64361 -- 64860
AAGAGGAAGAAGGCGAAGAGGAGGATGCCCCAGAGGATACCCCAGAGGATGCCGAGGCTGCCCCA
GAGGAAAACGCCAATGGAGGAGCACCTCCGGAGGTGCGCCCAGAGGCTCCAGACGCAAACCCAGA
GCTCTCGGACACCACAGACAGCGCCTTTGCCTCAAACAGCCCCTTTGGCCCCTTCGACACCGCCT
TTGCCTCAAACGCTTCGTCCCCATCACACTGGCGACACTCCTCAGCCCGGCCGCGGCTCTGCCCG
CTCCACCCGCGCTCCCAGTACTCCGCCTCCAGCGACGGCCCCCGTGCGTGCACCTCCGGCACCTC
CGCGGGAGGACCCGCCTCCATGATCTTGAGCAAGAACTTGCGCACCACCACGTCCACCGCAAGCC
GCCCCTCCGCCTGCTGGGCGCTCATGATGGCCACCACCTGGTCCGTCAGCGCCATCCCGCGCCCG
CCGGGCGCCGTGGTCGCCGCCACCACCCGCGGGTCCGCCACCATG



Found at i:64269 original size:30 final size:30

Alignment explanation


    Indices: 64233--64367  Score: 234
    Period size: 30  Copynumber: 4.5  Consensus size: 30

      64223 AGGGGGTAAG

                                       *  
      64233 GTTGGAGGAAGAGGAGGAGGGGAAGGACGT
          1 GTTGGAGGAAGAGGAGGAGGGGAAGGAAGT

                    *                     
      64263 GTTGGAGGGAGAGGAGGAGGGGAAGGAAGT
          1 GTTGGAGGAAGAGGAGGAGGGGAAGGAAGT

                                       *  
      64293 GTTGGAGGAAGAGGAGGAGGGGAAGGACGT
          1 GTTGGAGGAAGAGGAGGAGGGGAAGGAAGT

                    *                     
      64323 GTTGGAGGGAGAGGAGGAGGGGAAGGAAGT
          1 GTTGGAGGAAGAGGAGGAGGGGAAGGAAGT

                           
      64353 GTTGGAGGAAGAGGA
          1 GTTGGAGGAAGAGGA

      64368 AGAAGGCGAA


Statistics
Matches: 98,  Mismatches: 7, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  30   98  1.00

ACGTcount: A:0.30, C:0.01, G:0.58, T:0.10


Consensus pattern (30 bp):   
GTTGGAGGAAGAGGAGGAGGGGAAGGAAGT

Left flanking sequence: Indices 63733 -- 64232
ATCGGGTCGACGTCGTGGGCGGCCACCGCAGCAAACATCCACGCCTCGGCCGCCCGCGGGTCGTG
CGCGTACATCCGGCCAAACACCCGGTCGAAGGCCCCGACGTAGAGCCCGACGATCTTGTTGTCGT
CGGCGGAGAACGCGCTCAAGAGCGGGGTTTCCGGGAGGTCTGCGAGCCTGAGCGCGGCCACCGCC
TGTTGGTAGGGCAGCTGGGCGTCCTCCAGCTGTGTCGGGTCGTTGGCATAGAGCAACTGGGTGTG
GAGCTGCGACCGGAAGGCGGCGACGGTCTTGAACTTCGCCAAGAACTCGGGGTCGGCCCCGGGGA
GGTACCGCATCACGAGGAGGTCGTACGAGAGCATCCCGTAGTCGCGGCCGGGCTCCGGGGTGCTC
TGGCGGTTGGGGTGGAAGAGCTGGCCGTCGCCGAAGCGGAGGGTGGCCTGGGACGCCTGGGAGAG
CGCCCGGTCTTCGTGAGAGGGGGAGGGGGACGAGGAGGGGGTAAG


Right flanking sequence: Indices 64368 -- 64867
AGAAGGCGAAGAGGAGGATGCCCCAGAGGATACCCCAGAGGATGCCGAGGCTGCCCCAGAGGAAA
ACGCCAATGGAGGAGCACCTCCGGAGGTGCGCCCAGAGGCTCCAGACGCAAACCCAGAGCTCTCG
GACACCACAGACAGCGCCTTTGCCTCAAACAGCCCCTTTGGCCCCTTCGACACCGCCTTTGCCTC
AAACGCTTCGTCCCCATCACACTGGCGACACTCCTCAGCCCGGCCGCGGCTCTGCCCGCTCCACC
CGCGCTCCCAGTACTCCGCCTCCAGCGACGGCCCCCGTGCGTGCACCTCCGGCACCTCCGCGGGA
GGACCCGCCTCCATGATCTTGAGCAAGAACTTGCGCACCACCACGTCCACCGCAAGCCGCCCCTC
CGCCTGCTGGGCGCTCATGATGGCCACCACCTGGTCCGTCAGCGCCATCCCGCGCCCGCCGGGCG
CCGTGGTCGCCGCCACCACCCGCGGGTCCGCCACCATGTACGCCA



Found at i:64314 original size:60 final size:60

Alignment explanation


    Indices: 64209--64367  Score: 270
    Period size: 60  Copynumber: 2.7  Consensus size: 60

      64199 CGTGAGAGGG

                  *  *            *                                     
      64209 GGAGGGGGACGAGGAGGGG--GTAAG-GTTGGAGGAAGAGGAGGAGGGGAAGGACGTGTT
          1 GGAGGGAGAGGAGGAGGGGAAGGAAGTGTTGGAGGAAGAGGAGGAGGGGAAGGACGTGTT

                                                                        
      64266 GGAGGGAGAGGAGGAGGGGAAGGAAGTGTTGGAGGAAGAGGAGGAGGGGAAGGACGTGTT
          1 GGAGGGAGAGGAGGAGGGGAAGGAAGTGTTGGAGGAAGAGGAGGAGGGGAAGGACGTGTT

                                                      
      64326 GGAGGGAGAGGAGGAGGGGAAGGAAGTGTTGGAGGAAGAGGA
          1 GGAGGGAGAGGAGGAGGGGAAGGAAGTGTTGGAGGAAGAGGA

      64368 AGAAGGCGAA


Statistics
Matches: 96,  Mismatches: 3, Indels: 3
        0.94            0.03        0.03

Matches are distributed among these distances:
  57   17  0.18
  59    4  0.04
  60   75  0.78

ACGTcount: A:0.30, C:0.02, G:0.59, T:0.09


Consensus pattern (60 bp):   
GGAGGGAGAGGAGGAGGGGAAGGAAGTGTTGGAGGAAGAGGAGGAGGGGAAGGACGTGTT

Left flanking sequence: Indices 63709 -- 64208
GAAACCCCGATATCCGTCACCAACATCGGGTCGACGTCGTGGGCGGCCACCGCAGCAAACATCCA
CGCCTCGGCCGCCCGCGGGTCGTGCGCGTACATCCGGCCAAACACCCGGTCGAAGGCCCCGACGT
AGAGCCCGACGATCTTGTTGTCGTCGGCGGAGAACGCGCTCAAGAGCGGGGTTTCCGGGAGGTCT
GCGAGCCTGAGCGCGGCCACCGCCTGTTGGTAGGGCAGCTGGGCGTCCTCCAGCTGTGTCGGGTC
GTTGGCATAGAGCAACTGGGTGTGGAGCTGCGACCGGAAGGCGGCGACGGTCTTGAACTTCGCCA
AGAACTCGGGGTCGGCCCCGGGGAGGTACCGCATCACGAGGAGGTCGTACGAGAGCATCCCGTAG
TCGCGGCCGGGCTCCGGGGTGCTCTGGCGGTTGGGGTGGAAGAGCTGGCCGTCGCCGAAGCGGAG
GGTGGCCTGGGACGCCTGGGAGAGCGCCCGGTCTTCGTGAGAGGG


Right flanking sequence: Indices 64368 -- 64867
AGAAGGCGAAGAGGAGGATGCCCCAGAGGATACCCCAGAGGATGCCGAGGCTGCCCCAGAGGAAA
ACGCCAATGGAGGAGCACCTCCGGAGGTGCGCCCAGAGGCTCCAGACGCAAACCCAGAGCTCTCG
GACACCACAGACAGCGCCTTTGCCTCAAACAGCCCCTTTGGCCCCTTCGACACCGCCTTTGCCTC
AAACGCTTCGTCCCCATCACACTGGCGACACTCCTCAGCCCGGCCGCGGCTCTGCCCGCTCCACC
CGCGCTCCCAGTACTCCGCCTCCAGCGACGGCCCCCGTGCGTGCACCTCCGGCACCTCCGCGGGA
GGACCCGCCTCCATGATCTTGAGCAAGAACTTGCGCACCACCACGTCCACCGCAAGCCGCCCCTC
CGCCTGCTGGGCGCTCATGATGGCCACCACCTGGTCCGTCAGCGCCATCCCGCGCCCGCCGGGCG
CCGTGGTCGCCGCCACCACCCGCGGGTCCGCCACCATGTACGCCA



Found at i:64398 original size:12 final size:12

Alignment explanation


    Indices: 64381--64430  Score: 61
    Period size: 12  Copynumber: 4.4  Consensus size: 12

      64371 AGGCGAAGAG

                        
      64381 GAGGATGCCCCA
          1 GAGGATGCCCCA

                  *     
      64393 GAGGATACCCCA
          1 GAGGATGCCCCA

                        
      64405 GAGGATG--CC-
          1 GAGGATGCCCCA

                *       
      64414 GAGGCTGCCCCA
          1 GAGGATGCCCCA

                 
      64426 GAGGA
          1 GAGGA

      64431 AAACGCCAAT


Statistics
Matches: 31,  Mismatches: 4, Indels: 6
        0.76            0.10        0.15

Matches are distributed among these distances:
   9    6  0.19
  10    2  0.06
  11    2  0.06
  12   21  0.68

ACGTcount: A:0.26, C:0.30, G:0.36, T:0.08


Consensus pattern (12 bp):   
GAGGATGCCCCA

Left flanking sequence: Indices 63881 -- 64380
AGAGCGGGGTTTCCGGGAGGTCTGCGAGCCTGAGCGCGGCCACCGCCTGTTGGTAGGGCAGCTGG
GCGTCCTCCAGCTGTGTCGGGTCGTTGGCATAGAGCAACTGGGTGTGGAGCTGCGACCGGAAGGC
GGCGACGGTCTTGAACTTCGCCAAGAACTCGGGGTCGGCCCCGGGGAGGTACCGCATCACGAGGA
GGTCGTACGAGAGCATCCCGTAGTCGCGGCCGGGCTCCGGGGTGCTCTGGCGGTTGGGGTGGAAG
AGCTGGCCGTCGCCGAAGCGGAGGGTGGCCTGGGACGCCTGGGAGAGCGCCCGGTCTTCGTGAGA
GGGGGAGGGGGACGAGGAGGGGGTAAGGTTGGAGGAAGAGGAGGAGGGGAAGGACGTGTTGGAGG
GAGAGGAGGAGGGGAAGGAAGTGTTGGAGGAAGAGGAGGAGGGGAAGGACGTGTTGGAGGGAGAG
GAGGAGGGGAAGGAAGTGTTGGAGGAAGAGGAAGAAGGCGAAGAG


Right flanking sequence: Indices 64431 -- 64930
AAACGCCAATGGAGGAGCACCTCCGGAGGTGCGCCCAGAGGCTCCAGACGCAAACCCAGAGCTCT
CGGACACCACAGACAGCGCCTTTGCCTCAAACAGCCCCTTTGGCCCCTTCGACACCGCCTTTGCC
TCAAACGCTTCGTCCCCATCACACTGGCGACACTCCTCAGCCCGGCCGCGGCTCTGCCCGCTCCA
CCCGCGCTCCCAGTACTCCGCCTCCAGCGACGGCCCCCGTGCGTGCACCTCCGGCACCTCCGCGG
GAGGACCCGCCTCCATGATCTTGAGCAAGAACTTGCGCACCACCACGTCCACCGCAAGCCGCCCC
TCCGCCTGCTGGGCGCTCATGATGGCCACCACCTGGTCCGTCAGCGCCATCCCGCGCCCGCCGGG
CGCCGTGGTCGCCGCCACCACCCGCGGGTCCGCCACCATGTACGCCACCGGGGTCGTCGGGTGCG
GGTCCTCCCACAACGTGTGGTGCGGCATCGCAAGCGGGTGCTGGC



Found at i:65553 original size:16 final size:16

Alignment explanation


    Indices: 65524--65571  Score: 53
    Period size: 15  Copynumber: 2.9  Consensus size: 16

      65514 GGGGAGAAGT

                              
      65524 GAGAAGAGGAGAGGGGGA
          1 GAGAAG-GG-GAGGGGGA

                            
      65542 GAGAAGGGGA-GGGGA
          1 GAGAAGGGGAGGGGGA

                 **        
      65557 GAGAAAAGGAGGGGG
          1 GAGAAGGGGAGGGGG

      65572 GGTGGAGGAG


Statistics
Matches: 27,  Mismatches: 2, Indels: 4
        0.82            0.06        0.12

Matches are distributed among these distances:
  15   13  0.48
  16    6  0.22
  17    2  0.07
  18    6  0.22

ACGTcount: A:0.38, C:0.00, G:0.62, T:0.00


Consensus pattern (16 bp):   
GAGAAGGGGAGGGGGA

Left flanking sequence: Indices 65024 -- 65523
ACCCGCGGATGAGCTGGGGCGCAAGCTCGGGACACTCGTCGCCCGCCAACACCACCAGCGCCACC
AGCTGGTACGGGTCGAGCTGGCCGTGCAAGCTGTAGCGGTGCCACCACCCCAGGCGCACCACCGC
GTGCACCATGTGGTCGACGACCTGGTGGTACACCGAGGGCCAGCCGGCCATGAGGTAGGGGTGGG
CCAGCACCGCCTCGGTCTCCGCCAACCACCGGAGCGCCTGGTGGCGCACCGCCTTCTGGCCAAAG
TTGTGGGTGAGTCGGGCGGCGGTGGTGGCGGTCAAGTGGAGGTGGTGGTGCTGGGAGGAGGTGAG
GGGGTGCAGCAACACATTGGCGTTTTCGAGCACCTGGAGCACCTGGTCCATCGACCCGATGTCGG
GGCGGTGGCGGGGGAGCCGGCCCCACCGGGGGATCGAGGGTCTCATGGGGAGTTGGTGTGCAGGG
TTATGAGAAAAATGCGGTGGGAGGAGGGTAGAGGAGGGGAGAAGT


Right flanking sequence: Indices 65572 -- 66071
GGTGGAGGAGAGGTAGCGGTAGTGGTAATTGTAATTGTAGTGGTTGTGGTTGTGGTGGTGCTGGT
GGTGGTGGGTCAATTGGTGTTGGGAAGTATTGGCGGGCTCTGTCGTGTGCTGATTTTGTGGGCTG
AGGAACAATGGTGGATCTGACGTCGGGGTTTGGAGAAGAGGATGGAGGTGGAGAGATGGAGGGTG
GAAGAATAGAGAAGTGGAAGGAGGAGGTGGAAAGATGGAGGACTAATGGAAGATTTTGAAGTCGT
ATGGTTGGTTGTATTGTCTCAGAAGCAGGCTATTAACTAGTCGTTAGATTGAAAATTGGTTCTAG
AAGATTAAATTCGCTATTTGTTTCCGCTACATTCGTTCCAATACCTTCGTTTCGCTACACTCGTT
TGCAACACTCGTTTGCTACACTCGTTTGCTACACTCGTTTCCACTGTTCTTCATTGAATCGACTA
TTAATCATTAGATGGCATACACTATAATTAGAATGGCGGTAGTGC



Found at i:65761 original size:14 final size:13

Alignment explanation


    Indices: 65742--65807  Score: 53
    Period size: 14  Copynumber: 4.6  Consensus size: 13

      65732 TGGAGAAGAG

                          
      65742 GATGGAGGTGGAGA
          1 GATGGAGGTGGA-A

                          
      65756 GATGGAGGGTGGAA
          1 GATGGA-GGTGGAA

                     *      
      65770 GAATAGAGAAGTGGAA
          1 G-AT-G-GAGGTGGAA

                           
      65786 GGA-GGAGGTGGAAA
          1 -GATGGAGGTGG-AA

                    
      65800 GATGGAGG
          1 GATGGAGG

      65808 ACTAATGGAA


Statistics
Matches: 43,  Mismatches: 2, Indels: 14
        0.73            0.03        0.24

Matches are distributed among these distances:
  13    8  0.19
  14   16  0.37
  15    8  0.19
  16    8  0.19
  17    3  0.07

ACGTcount: A:0.35, C:0.00, G:0.53, T:0.12


Consensus pattern (13 bp):   
GATGGAGGTGGAA

Left flanking sequence: Indices 65242 -- 65741
AACCACCGGAGCGCCTGGTGGCGCACCGCCTTCTGGCCAAAGTTGTGGGTGAGTCGGGCGGCGGT
GGTGGCGGTCAAGTGGAGGTGGTGGTGCTGGGAGGAGGTGAGGGGGTGCAGCAACACATTGGCGT
TTTCGAGCACCTGGAGCACCTGGTCCATCGACCCGATGTCGGGGCGGTGGCGGGGGAGCCGGCCC
CACCGGGGGATCGAGGGTCTCATGGGGAGTTGGTGTGCAGGGTTATGAGAAAAATGCGGTGGGAG
GAGGGTAGAGGAGGGGAGAAGTGAGAAGAGGAGAGGGGGAGAGAAGGGGAGGGGAGAGAAAAGGA
GGGGGGGTGGAGGAGAGGTAGCGGTAGTGGTAATTGTAATTGTAGTGGTTGTGGTTGTGGTGGTG
CTGGTGGTGGTGGGTCAATTGGTGTTGGGAAGTATTGGCGGGCTCTGTCGTGTGCTGATTTTGTG
GGCTGAGGAACAATGGTGGATCTGACGTCGGGGTTTGGAGAAGAG


Right flanking sequence: Indices 65808 -- 66307
ACTAATGGAAGATTTTGAAGTCGTATGGTTGGTTGTATTGTCTCAGAAGCAGGCTATTAACTAGT
CGTTAGATTGAAAATTGGTTCTAGAAGATTAAATTCGCTATTTGTTTCCGCTACATTCGTTCCAA
TACCTTCGTTTCGCTACACTCGTTTGCAACACTCGTTTGCTACACTCGTTTGCTACACTCGTTTC
CACTGTTCTTCATTGAATCGACTATTAATCATTAGATGGCATACACTATAATTAGAATGGCGGTA
GTGCAATGGCCAATGGGTTGGTGCGCCAAGCGTGACAGACACAGACAGCCGGCGAACACCACCAC
GCCACGATGCATCAGGTGACTATCCCAAAACGTCACCGGAAAATAAAGCGCTCGGGGGACATGGT
GGCATGTATCCAATAACCCAAAAGGGTAATCGAAGCATTTGGGTGGATGACACCTGTCGCTGAAG
ATCTCTATCGAGACCTTGTAAGAGAGAAGACCGTGTGACGCAGTG



Found at i:65960 original size:28 final size:26

Alignment explanation


    Indices: 65916--66002  Score: 77
    Period size: 26  Copynumber: 3.2  Consensus size: 26

      65906 TTCGCTATTT

                        *         *      
      65916 GTTTCCGCTACATTCGTTCCAATACCTTC
          1 GTTT-CGCTACACTCGTTCCAACA-C-TC

                              *        
      65945 GTTTCGCTACACTCGTTTGCAACACTC
          1 GTTTCGCTACACTCG-TTCCAACACTC

                              * *      
      65972 GTTT-GCTACACTCGTTTGCTACACTC
          1 GTTTCGCTACACTCG-TTCCAACACTC

                 
      65998 GTTTC
          1 GTTTC

      66003 CACTGTTCTT


Statistics
Matches: 52,  Mismatches: 4, Indels: 6
        0.84            0.06        0.10

Matches are distributed among these distances:
  26   25  0.48
  27    6  0.12
  28   11  0.21
  29   10  0.19

ACGTcount: A:0.16, C:0.32, G:0.14, T:0.38


Consensus pattern (26 bp):   
GTTTCGCTACACTCGTTCCAACACTC

Left flanking sequence: Indices 65416 -- 65915
CGGTGGCGGGGGAGCCGGCCCCACCGGGGGATCGAGGGTCTCATGGGGAGTTGGTGTGCAGGGTT
ATGAGAAAAATGCGGTGGGAGGAGGGTAGAGGAGGGGAGAAGTGAGAAGAGGAGAGGGGGAGAGA
AGGGGAGGGGAGAGAAAAGGAGGGGGGGTGGAGGAGAGGTAGCGGTAGTGGTAATTGTAATTGTA
GTGGTTGTGGTTGTGGTGGTGCTGGTGGTGGTGGGTCAATTGGTGTTGGGAAGTATTGGCGGGCT
CTGTCGTGTGCTGATTTTGTGGGCTGAGGAACAATGGTGGATCTGACGTCGGGGTTTGGAGAAGA
GGATGGAGGTGGAGAGATGGAGGGTGGAAGAATAGAGAAGTGGAAGGAGGAGGTGGAAAGATGGA
GGACTAATGGAAGATTTTGAAGTCGTATGGTTGGTTGTATTGTCTCAGAAGCAGGCTATTAACTA
GTCGTTAGATTGAAAATTGGTTCTAGAAGATTAAATTCGCTATTT


Right flanking sequence: Indices 66003 -- 66502
CACTGTTCTTCATTGAATCGACTATTAATCATTAGATGGCATACACTATAATTAGAATGGCGGTA
GTGCAATGGCCAATGGGTTGGTGCGCCAAGCGTGACAGACACAGACAGCCGGCGAACACCACCAC
GCCACGATGCATCAGGTGACTATCCCAAAACGTCACCGGAAAATAAAGCGCTCGGGGGACATGGT
GGCATGTATCCAATAACCCAAAAGGGTAATCGAAGCATTTGGGTGGATGACACCTGTCGCTGAAG
ATCTCTATCGAGACCTTGTAAGAGAGAAGACCGTGTGACGCAGTGTCAGACAGCCATGCAGTGCA
GGAATGCAACCAGCGAGTGAAGAACGTTGGAATGACGTCCAACGATGAATGAAAACAGGAACAAC
GGTCAAGTTAGGCGGTGTCAAGTCAGAAGTGACTAATAAAGTACCACATAGGCTCAAAACAAAGT
CTCAAACATAGGCTCAAACATAGGCTCAAATAGGCTCAAACATAG



Found at i:65971 original size:13 final size:13

Alignment explanation


    Indices: 65943--66001  Score: 100
    Period size: 13  Copynumber: 4.5  Consensus size: 13

      65933 TCCAATACCT

                          
      65943 TCGTTTCGCTACAC
          1 TCGTTT-GCTACAC

                    *    
      65957 TCGTTTGCAACAC
          1 TCGTTTGCTACAC

                         
      65970 TCGTTTGCTACAC
          1 TCGTTTGCTACAC

                         
      65983 TCGTTTGCTACAC
          1 TCGTTTGCTACAC

                  
      65996 TCGTTT
          1 TCGTTT

      66002 CCACTGTTCT


Statistics
Matches: 43,  Mismatches: 2, Indels: 1
        0.93            0.04        0.02

Matches are distributed among these distances:
  13   37  0.86
  14    6  0.14

ACGTcount: A:0.15, C:0.31, G:0.15, T:0.39


Consensus pattern (13 bp):   
TCGTTTGCTACAC

Left flanking sequence: Indices 65443 -- 65942
GGGATCGAGGGTCTCATGGGGAGTTGGTGTGCAGGGTTATGAGAAAAATGCGGTGGGAGGAGGGT
AGAGGAGGGGAGAAGTGAGAAGAGGAGAGGGGGAGAGAAGGGGAGGGGAGAGAAAAGGAGGGGGG
GTGGAGGAGAGGTAGCGGTAGTGGTAATTGTAATTGTAGTGGTTGTGGTTGTGGTGGTGCTGGTG
GTGGTGGGTCAATTGGTGTTGGGAAGTATTGGCGGGCTCTGTCGTGTGCTGATTTTGTGGGCTGA
GGAACAATGGTGGATCTGACGTCGGGGTTTGGAGAAGAGGATGGAGGTGGAGAGATGGAGGGTGG
AAGAATAGAGAAGTGGAAGGAGGAGGTGGAAAGATGGAGGACTAATGGAAGATTTTGAAGTCGTA
TGGTTGGTTGTATTGTCTCAGAAGCAGGCTATTAACTAGTCGTTAGATTGAAAATTGGTTCTAGA
AGATTAAATTCGCTATTTGTTTCCGCTACATTCGTTCCAATACCT


Right flanking sequence: Indices 66002 -- 66501
CCACTGTTCTTCATTGAATCGACTATTAATCATTAGATGGCATACACTATAATTAGAATGGCGGT
AGTGCAATGGCCAATGGGTTGGTGCGCCAAGCGTGACAGACACAGACAGCCGGCGAACACCACCA
CGCCACGATGCATCAGGTGACTATCCCAAAACGTCACCGGAAAATAAAGCGCTCGGGGGACATGG
TGGCATGTATCCAATAACCCAAAAGGGTAATCGAAGCATTTGGGTGGATGACACCTGTCGCTGAA
GATCTCTATCGAGACCTTGTAAGAGAGAAGACCGTGTGACGCAGTGTCAGACAGCCATGCAGTGC
AGGAATGCAACCAGCGAGTGAAGAACGTTGGAATGACGTCCAACGATGAATGAAAACAGGAACAA
CGGTCAAGTTAGGCGGTGTCAAGTCAGAAGTGACTAATAAAGTACCACATAGGCTCAAAACAAAG
TCTCAAACATAGGCTCAAACATAGGCTCAAATAGGCTCAAACATA



Found at i:66473 original size:12 final size:12

Alignment explanation


    Indices: 66438--66520  Score: 98
    Period size: 12  Copynumber: 6.9  Consensus size: 12

      66428 ATAAAGTACC

                         
      66438 ACATAGGCTCAAA
          1 ACATAGGCTC-AA

               *  *     
      66451 ACAAAGTCTCAA
          1 ACATAGGCTCAA

                        
      66463 ACATAGGCTCAA
          1 ACATAGGCTCAA

                        
      66475 ACATAGGCTC-A
          1 ACATAGGCTCAA

                        
      66486 A-ATAGGCTCAA
          1 ACATAGGCTCAA

                    *    
      66497 ACATAGGCCCAGA
          1 ACATAGGCTCA-A

                  *    
      66510 ACATAGTCTCA
          1 ACATAGGCTCA

      66521 GAAACCATGG


Statistics
Matches: 60,  Mismatches: 7, Indels: 6
        0.82            0.10        0.08

Matches are distributed among these distances:
  10    8  0.13
  11    4  0.07
  12   30  0.50
  13   18  0.30

ACGTcount: A:0.42, C:0.25, G:0.16, T:0.17


Consensus pattern (12 bp):   
ACATAGGCTCAA

Left flanking sequence: Indices 65938 -- 66437
TACCTTCGTTTCGCTACACTCGTTTGCAACACTCGTTTGCTACACTCGTTTGCTACACTCGTTTC
CACTGTTCTTCATTGAATCGACTATTAATCATTAGATGGCATACACTATAATTAGAATGGCGGTA
GTGCAATGGCCAATGGGTTGGTGCGCCAAGCGTGACAGACACAGACAGCCGGCGAACACCACCAC
GCCACGATGCATCAGGTGACTATCCCAAAACGTCACCGGAAAATAAAGCGCTCGGGGGACATGGT
GGCATGTATCCAATAACCCAAAAGGGTAATCGAAGCATTTGGGTGGATGACACCTGTCGCTGAAG
ATCTCTATCGAGACCTTGTAAGAGAGAAGACCGTGTGACGCAGTGTCAGACAGCCATGCAGTGCA
GGAATGCAACCAGCGAGTGAAGAACGTTGGAATGACGTCCAACGATGAATGAAAACAGGAACAAC
GGTCAAGTTAGGCGGTGTCAAGTCAGAAGTGACTAATAAAGTACC


Right flanking sequence: Indices 66521 -- 67020
GAAACCATGGTTTCGAAAACATGGCAACACGTCCATTTTCAACGCTGTCCTTCCTTTCTCCTTCT
TTCTCCCCTTCCTTTCTCCTCCTTTCTCCTCTACCTCCGTCCCTTCACCTGCCGCTGCTGGGGCT
GAGCCTGCTGGGCCTGGCCATTCCCAAGCCTCTGCTCCGCCACCGTGATCAACGGCACCAACCGC
TGGTACTGGCGCAGGTACTCGGCAATCGCCGCCTGCAAGTTCTTGAGCTTCTTCACCACCAGCTC
GTAGTAGTGGTGCTGGGACTGGCCCTTGGGCACCGTGGCCAACGCAGTGACAAACTGGGCCATGG
CATTGCGCAACCCGTTGATCTCGGCCTTCAAGGCGTCGAGCTCGTCAAACACCGCCTGGGGCTCG
ACCCTCCCCTCCTCGATGTCCTCGATCCGCACCACGTCGGGTAGTTTCAGGGTGCGTGGGGGTGT
GGGTTGCTGGGGCTGTCCGTTGGGTATCTGGGGAGTCGCCGTGGG



Found at i:66493 original size:22 final size:24

Alignment explanation


    Indices: 66438--66520  Score: 98
    Period size: 22  Copynumber: 3.5  Consensus size: 24

      66428 ATAAAGTACC

                            *  *     
      66438 ACATAGGCTCAAAACAAAGTCTCAA
          1 ACATAGGCTC-AAACATAGGCTCAA

                                    
      66463 ACATAGGCTCAAACATAGGCTC-A
          1 ACATAGGCTCAAACATAGGCTCAA

                                *    
      66486 A-ATAGGCTCAAACATAGGCCCAGA
          1 ACATAGGCTCAAACATAGGCTCA-A

                  *    
      66510 ACATAGTCTCA
          1 ACATAGGCTCA

      66521 GAAACCATGG


Statistics
Matches: 51,  Mismatches: 4, Indels: 6
        0.84            0.07        0.10

Matches are distributed among these distances:
  22   19  0.37
  23    2  0.04
  24   12  0.24
  25   18  0.35

ACGTcount: A:0.42, C:0.25, G:0.16, T:0.17


Consensus pattern (24 bp):   
ACATAGGCTCAAACATAGGCTCAA

Left flanking sequence: Indices 65938 -- 66437
TACCTTCGTTTCGCTACACTCGTTTGCAACACTCGTTTGCTACACTCGTTTGCTACACTCGTTTC
CACTGTTCTTCATTGAATCGACTATTAATCATTAGATGGCATACACTATAATTAGAATGGCGGTA
GTGCAATGGCCAATGGGTTGGTGCGCCAAGCGTGACAGACACAGACAGCCGGCGAACACCACCAC
GCCACGATGCATCAGGTGACTATCCCAAAACGTCACCGGAAAATAAAGCGCTCGGGGGACATGGT
GGCATGTATCCAATAACCCAAAAGGGTAATCGAAGCATTTGGGTGGATGACACCTGTCGCTGAAG
ATCTCTATCGAGACCTTGTAAGAGAGAAGACCGTGTGACGCAGTGTCAGACAGCCATGCAGTGCA
GGAATGCAACCAGCGAGTGAAGAACGTTGGAATGACGTCCAACGATGAATGAAAACAGGAACAAC
GGTCAAGTTAGGCGGTGTCAAGTCAGAAGTGACTAATAAAGTACC


Right flanking sequence: Indices 66521 -- 67020
GAAACCATGGTTTCGAAAACATGGCAACACGTCCATTTTCAACGCTGTCCTTCCTTTCTCCTTCT
TTCTCCCCTTCCTTTCTCCTCCTTTCTCCTCTACCTCCGTCCCTTCACCTGCCGCTGCTGGGGCT
GAGCCTGCTGGGCCTGGCCATTCCCAAGCCTCTGCTCCGCCACCGTGATCAACGGCACCAACCGC
TGGTACTGGCGCAGGTACTCGGCAATCGCCGCCTGCAAGTTCTTGAGCTTCTTCACCACCAGCTC
GTAGTAGTGGTGCTGGGACTGGCCCTTGGGCACCGTGGCCAACGCAGTGACAAACTGGGCCATGG
CATTGCGCAACCCGTTGATCTCGGCCTTCAAGGCGTCGAGCTCGTCAAACACCGCCTGGGGCTCG
ACCCTCCCCTCCTCGATGTCCTCGATCCGCACCACGTCGGGTAGTTTCAGGGTGCGTGGGGGTGT
GGGTTGCTGGGGCTGTCCGTTGGGTATCTGGGGAGTCGCCGTGGG



Found at i:66589 original size:10 final size:11

Alignment explanation


    Indices: 66568--66615  Score: 64
    Period size: 10  Copynumber: 4.4  Consensus size: 11

      66558 TTCAACGCTG

                       
      66568 TCCTTCCTTTC
          1 TCCTTCCTTTC

                       
      66579 TCCTT-CTTTC
          1 TCCTTCCTTTC

                         
      66589 TCCCCTTCCTTTC
          1 T--CCTTCCTTTC

                       
      66602 TCC-TCCTTTC
          1 TCCTTCCTTTC

                
      66612 TCCT
          1 TCCT

      66616 CTACCTCCGT


Statistics
Matches: 33,  Mismatches: 0, Indels: 8
        0.80            0.00        0.20

Matches are distributed among these distances:
  10   16  0.48
  11    7  0.21
  12    4  0.12
  13    6  0.18

ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52


Consensus pattern (11 bp):   
TCCTTCCTTTC

Left flanking sequence: Indices 66068 -- 66567
GTGCAATGGCCAATGGGTTGGTGCGCCAAGCGTGACAGACACAGACAGCCGGCGAACACCACCAC
GCCACGATGCATCAGGTGACTATCCCAAAACGTCACCGGAAAATAAAGCGCTCGGGGGACATGGT
GGCATGTATCCAATAACCCAAAAGGGTAATCGAAGCATTTGGGTGGATGACACCTGTCGCTGAAG
ATCTCTATCGAGACCTTGTAAGAGAGAAGACCGTGTGACGCAGTGTCAGACAGCCATGCAGTGCA
GGAATGCAACCAGCGAGTGAAGAACGTTGGAATGACGTCCAACGATGAATGAAAACAGGAACAAC
GGTCAAGTTAGGCGGTGTCAAGTCAGAAGTGACTAATAAAGTACCACATAGGCTCAAAACAAAGT
CTCAAACATAGGCTCAAACATAGGCTCAAATAGGCTCAAACATAGGCCCAGAACATAGTCTCAGA
AACCATGGTTTCGAAAACATGGCAACACGTCCATTTTCAACGCTG


Right flanking sequence: Indices 66616 -- 67115
CTACCTCCGTCCCTTCACCTGCCGCTGCTGGGGCTGAGCCTGCTGGGCCTGGCCATTCCCAAGCC
TCTGCTCCGCCACCGTGATCAACGGCACCAACCGCTGGTACTGGCGCAGGTACTCGGCAATCGCC
GCCTGCAAGTTCTTGAGCTTCTTCACCACCAGCTCGTAGTAGTGGTGCTGGGACTGGCCCTTGGG
CACCGTGGCCAACGCAGTGACAAACTGGGCCATGGCATTGCGCAACCCGTTGATCTCGGCCTTCA
AGGCGTCGAGCTCGTCAAACACCGCCTGGGGCTCGACCCTCCCCTCCTCGATGTCCTCGATCCGC
ACCACGTCGGGTAGTTTCAGGGTGCGTGGGGGTGTGGGTTGCTGGGGCTGTCCGTTGGGTATCTG
GGGAGTCGCCGTGGGGTTCGTGGCGGCGGCGTTCATTGTGGGACGGCTGGGTGCCTGGTGGTGCT
AGTGGGTGTGGTGAGAAAAATGAGGCAACCGGGAGGGGTCGGAGA



Found at i:66599 original size:23 final size:23

Alignment explanation


    Indices: 66569--66614  Score: 83
    Period size: 23  Copynumber: 2.0  Consensus size: 23

      66559 TCAACGCTGT

                          *        
      66569 CCTTCCTTTCTCCTTCTTTCTCC
          1 CCTTCCTTTCTCCTCCTTTCTCC

                                   
      66592 CCTTCCTTTCTCCTCCTTTCTCC
          1 CCTTCCTTTCTCCTCCTTTCTCC

      66615 TCTACCTCCG


Statistics
Matches: 22,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  23   22  1.00

ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50


Consensus pattern (23 bp):   
CCTTCCTTTCTCCTCCTTTCTCC

Left flanking sequence: Indices 66069 -- 66568
TGCAATGGCCAATGGGTTGGTGCGCCAAGCGTGACAGACACAGACAGCCGGCGAACACCACCACG
CCACGATGCATCAGGTGACTATCCCAAAACGTCACCGGAAAATAAAGCGCTCGGGGGACATGGTG
GCATGTATCCAATAACCCAAAAGGGTAATCGAAGCATTTGGGTGGATGACACCTGTCGCTGAAGA
TCTCTATCGAGACCTTGTAAGAGAGAAGACCGTGTGACGCAGTGTCAGACAGCCATGCAGTGCAG
GAATGCAACCAGCGAGTGAAGAACGTTGGAATGACGTCCAACGATGAATGAAAACAGGAACAACG
GTCAAGTTAGGCGGTGTCAAGTCAGAAGTGACTAATAAAGTACCACATAGGCTCAAAACAAAGTC
TCAAACATAGGCTCAAACATAGGCTCAAATAGGCTCAAACATAGGCCCAGAACATAGTCTCAGAA
ACCATGGTTTCGAAAACATGGCAACACGTCCATTTTCAACGCTGT


Right flanking sequence: Indices 66615 -- 67114
TCTACCTCCGTCCCTTCACCTGCCGCTGCTGGGGCTGAGCCTGCTGGGCCTGGCCATTCCCAAGC
CTCTGCTCCGCCACCGTGATCAACGGCACCAACCGCTGGTACTGGCGCAGGTACTCGGCAATCGC
CGCCTGCAAGTTCTTGAGCTTCTTCACCACCAGCTCGTAGTAGTGGTGCTGGGACTGGCCCTTGG
GCACCGTGGCCAACGCAGTGACAAACTGGGCCATGGCATTGCGCAACCCGTTGATCTCGGCCTTC
AAGGCGTCGAGCTCGTCAAACACCGCCTGGGGCTCGACCCTCCCCTCCTCGATGTCCTCGATCCG
CACCACGTCGGGTAGTTTCAGGGTGCGTGGGGGTGTGGGTTGCTGGGGCTGTCCGTTGGGTATCT
GGGGAGTCGCCGTGGGGTTCGTGGCGGCGGCGTTCATTGTGGGACGGCTGGGTGCCTGGTGGTGC
TAGTGGGTGTGGTGAGAAAAATGAGGCAACCGGGAGGGGTCGGAG



Found at i:67784 original size:9 final size:9

Alignment explanation


    Indices: 67772--67799  Score: 56
    Period size: 9  Copynumber: 3.1  Consensus size: 9

      67762 TTTAAGACAT

                     
      67772 TTCTACGCC
          1 TTCTACGCC

                     
      67781 TTCTACGCC
          1 TTCTACGCC

                     
      67790 TTCTACGCC
          1 TTCTACGCC

             
      67799 T
          1 T

      67800 ACCTTCTACA


Statistics
Matches: 19,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   9   19  1.00

ACGTcount: A:0.11, C:0.43, G:0.11, T:0.36


Consensus pattern (9 bp):   
TTCTACGCC

Left flanking sequence: Indices 67272 -- 67771
AGAAGTGGTGGGTAGCGCACGCAGAACGCGCTGGGAAGAAATGTGAAGGAGAGTAGTGTGTTTTG
TGGGGTTGGTAGAAACAGAACCGAGCCTAGCTAGCGGTGCCGGGCGCTGCTGGCGGCACCATTGG
GTCACCGAGCCTGGGCTCCTGCATAGACCCAACGGGTCTATATACGGCTAAACCAGAGGAAAGAA
CGCAGAACGCGGGGTTCACAATGGTGGAACAGATTGGATACGGCCTGGGTACGGCCTAGATCTTG
CCTGGATACGCCCTAGCTGGCTTTCTCCACCCTGGCTTGCGTCTATGTGTCGCTGTCCACCGGTG
TTCCAGAATCCTGCAGACAGCCCAGACCCAGCTTCAAGCCTATAGCAACGATGTCTCAAGAGTCA
AAACAAACAAGCGCGAGAATTAGACTTTTGGACGGATCCGGCGCGACTTAAGTCGTTCTAAGCCC
CCACCCGAGCCCAATCCTTTCACACCTACTAGACTTTTAAGACAT


Right flanking sequence: Indices 67800 -- 68299
ACCTTCTACACTCCACAAAGAGCCCAAATCGATCGGCTCTACTCTAGCCGACCACTGTACGCTAC
GTGCAGGCCCTTGTAAGCCCCTCAATGTGCTCTTCCACCCCACCACCCGTCTCTTCCACCCACCA
CCTCTTCTCTGACCCCTCAAAAATTTCCTAATCGGTCACTGTCACCGGAACCACCACCGGAACCA
CCACCACGGCCCCACCACGGCCCCACCACGACCCCACCAGCACCCTGACAGCCTCTACCCCACCT
TTTTTCCACAGCCCACACCACCAACGGCCGGTAGCGCGTATCTCCGCTACCCCACCATGGTCTTC
ACATGCACACCGTAGCCATATACCGACCCGATCGCCACACAATACCTCTCCAACACCATGTCTAC
TGTTCTCGTCACCGGGGCTAACGGGTACATCGCCCAGTGGATCGTAAAGTACCTCATCGAGAACG
GATTCCGGGTCGTCGGAACCGTCAGATCGAAGGAGAAGGGCTCAA



Found at i:67989 original size:12 final size:12

Alignment explanation


    Indices: 67972--67999  Score: 56
    Period size: 12  Copynumber: 2.3  Consensus size: 12

      67962 CGGTCACTGT

                        
      67972 CACCGGAACCAC
          1 CACCGGAACCAC

                        
      67984 CACCGGAACCAC
          1 CACCGGAACCAC

                
      67996 CACC
          1 CACC

      68000 ACGGCCCCAC


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   16  1.00

ACGTcount: A:0.32, C:0.54, G:0.14, T:0.00


Consensus pattern (12 bp):   
CACCGGAACCAC

Left flanking sequence: Indices 67472 -- 67971
AACGCGGGGTTCACAATGGTGGAACAGATTGGATACGGCCTGGGTACGGCCTAGATCTTGCCTGG
ATACGCCCTAGCTGGCTTTCTCCACCCTGGCTTGCGTCTATGTGTCGCTGTCCACCGGTGTTCCA
GAATCCTGCAGACAGCCCAGACCCAGCTTCAAGCCTATAGCAACGATGTCTCAAGAGTCAAAACA
AACAAGCGCGAGAATTAGACTTTTGGACGGATCCGGCGCGACTTAAGTCGTTCTAAGCCCCCACC
CGAGCCCAATCCTTTCACACCTACTAGACTTTTAAGACATTTCTACGCCTTCTACGCCTTCTACG
CCTACCTTCTACACTCCACAAAGAGCCCAAATCGATCGGCTCTACTCTAGCCGACCACTGTACGC
TACGTGCAGGCCCTTGTAAGCCCCTCAATGTGCTCTTCCACCCCACCACCCGTCTCTTCCACCCA
CCACCTCTTCTCTGACCCCTCAAAAATTTCCTAATCGGTCACTGT


Right flanking sequence: Indices 68000 -- 68499
ACGGCCCCACCACGGCCCCACCACGACCCCACCAGCACCCTGACAGCCTCTACCCCACCTTTTTT
CCACAGCCCACACCACCAACGGCCGGTAGCGCGTATCTCCGCTACCCCACCATGGTCTTCACATG
CACACCGTAGCCATATACCGACCCGATCGCCACACAATACCTCTCCAACACCATGTCTACTGTTC
TCGTCACCGGGGCTAACGGGTACATCGCCCAGTGGATCGTAAAGTACCTCATCGAGAACGGATTC
CGGGTCGTCGGAACCGTCAGATCGAAGGAGAAGGGCTCAAAGCTTGCCCAGGCGCTCGGCAACCC
CGTCAACCTCAGTTTTGAGATCGTCACCGACTTGGCAGACCCCCACGCGTTCGACAAGGTGCTCC
AGGACCACCCGGAGATCACCACGGTGCTCCACACCGCCCTGCCGTTCACGTTCTCGGTCGAGGAC
CCCGAACGGGACATTTTGCAGCCGGCGATCACAGGCACCAAGCTG



Found at i:68011 original size:11 final size:11

Alignment explanation


    Indices: 67995--68033  Score: 69
    Period size: 11  Copynumber: 3.5  Consensus size: 11

      67985 ACCGGAACCA

                       
      67995 CCACCACGGCC
          1 CCACCACGGCC

                       
      68006 CCACCACGGCC
          1 CCACCACGGCC

                    *  
      68017 CCACCACGACC
          1 CCACCACGGCC

                  
      68028 CCACCA
          1 CCACCA

      68034 GCACCCTGAC


Statistics
Matches: 27,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  11   27  1.00

ACGTcount: A:0.23, C:0.64, G:0.13, T:0.00


Consensus pattern (11 bp):   
CCACCACGGCC

Left flanking sequence: Indices 67495 -- 67994
ACAGATTGGATACGGCCTGGGTACGGCCTAGATCTTGCCTGGATACGCCCTAGCTGGCTTTCTCC
ACCCTGGCTTGCGTCTATGTGTCGCTGTCCACCGGTGTTCCAGAATCCTGCAGACAGCCCAGACC
CAGCTTCAAGCCTATAGCAACGATGTCTCAAGAGTCAAAACAAACAAGCGCGAGAATTAGACTTT
TGGACGGATCCGGCGCGACTTAAGTCGTTCTAAGCCCCCACCCGAGCCCAATCCTTTCACACCTA
CTAGACTTTTAAGACATTTCTACGCCTTCTACGCCTTCTACGCCTACCTTCTACACTCCACAAAG
AGCCCAAATCGATCGGCTCTACTCTAGCCGACCACTGTACGCTACGTGCAGGCCCTTGTAAGCCC
CTCAATGTGCTCTTCCACCCCACCACCCGTCTCTTCCACCCACCACCTCTTCTCTGACCCCTCAA
AAATTTCCTAATCGGTCACTGTCACCGGAACCACCACCGGAACCA


Right flanking sequence: Indices 68034 -- 68533
GCACCCTGACAGCCTCTACCCCACCTTTTTTCCACAGCCCACACCACCAACGGCCGGTAGCGCGT
ATCTCCGCTACCCCACCATGGTCTTCACATGCACACCGTAGCCATATACCGACCCGATCGCCACA
CAATACCTCTCCAACACCATGTCTACTGTTCTCGTCACCGGGGCTAACGGGTACATCGCCCAGTG
GATCGTAAAGTACCTCATCGAGAACGGATTCCGGGTCGTCGGAACCGTCAGATCGAAGGAGAAGG
GCTCAAAGCTTGCCCAGGCGCTCGGCAACCCCGTCAACCTCAGTTTTGAGATCGTCACCGACTTG
GCAGACCCCCACGCGTTCGACAAGGTGCTCCAGGACCACCCGGAGATCACCACGGTGCTCCACAC
CGCCCTGCCGTTCACGTTCTCGGTCGAGGACCCCGAACGGGACATTTTGCAGCCGGCGATCACAG
GCACCAAGCTGATCCTCGAGGCCATCGTCAAGTACGCTCCCCAGG



Found at i:70869 original size:16 final size:16

Alignment explanation


    Indices: 70848--70888  Score: 64
    Period size: 16  Copynumber: 2.6  Consensus size: 16

      70838 TAGACACGGT

                        **  
      70848 GAGCTACGTAAATGGA
          1 GAGCTACGTAAACAGA

                            
      70864 GAGCTACGTAAACAGA
          1 GAGCTACGTAAACAGA

                     
      70880 GAGCTACGT
          1 GAGCTACGT

      70889 GAACGATGTA


Statistics
Matches: 23,  Mismatches: 2, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
  16   23  1.00

ACGTcount: A:0.37, C:0.17, G:0.29, T:0.17


Consensus pattern (16 bp):   
GAGCTACGTAAACAGA

Left flanking sequence: Indices 70348 -- 70847
GCGGATGGCACGGTCCTCGATCCCGTCCAACTGGCCCTGGAGCTCACCCACCATCTGGATGAGGT
CCTCGTTGGTGACGTAATCCGAGAGGTCGAGCTCGGAGGAGGGCGCGCCCGCGGCGGGGGCAGCG
CCCCGGATCAGCGCCAGCACGTCGTCAATCAGCTTCATGCGGGTTTTGACGTCGTTGACCTGGAG
GGCAAGCATCTGCTGGCCGGTGGTGGCCAAGAGCTTGCCCTGCTTGTCGACAATGGCGCGTAAGT
CGTCGATTTGCTTCTGGAGGTCGGCCATGGGTGGAGGAGGACGACGCGGGACGAAGTAACGCGAT
AAACAACGCGGGGCTCCGAACGTGCAAGGGGCGGGGCTCGCAACGCGGTAACAAACAGACGATAG
GAGAGGGGCGGGGCTGCGAACCACGAAGCGCGGGGAGTTAATAGTGACACGTCGAGCCAAGCAAA
GAAGGCTACAGAACGGAGAAGAAGGTGGGCGTTTCTAGACACGGT


Right flanking sequence: Indices 70889 -- 71388
GAACGATGTAAACAATGGTTCGGTGGTAAACCCACCCATCCCACACTAAACTTTTCCGCCTTGGG
TTTAAACCCCCTCGTGACTTTGTGACTGTTGAGGTGGCTAGTGGCGAGATTGGGCTGCAAACCAA
GGCTGCAAACCGGGCGGCAAACAGGGGGCTAAACGCCACAAACAGGTTGTGCGAGCACAGACGTA
GACGCTGGTGGTCCGATTGGGCGGATAGCACCGGTGTCCGTTTTGGGAAGGCGCGTTGCGTGTGC
TCGTATTCCCGTACCCAATCAGCCCGTGGATTGCTGTTTCTCGTAGAAGCACCGCGGGAATCACG
GTTCCCACGCGGAAATAGGCGGCTGGTGGGGCGATGGTCTGCTGCCAGCAAGGCCGGATGCCTTG
CTCTGAAGTGAAATTCGAATGTGGTGGTAATTACGGTGGACCACTGGTACTATCAAGCAAGCACT
GGTGGCTATTTCTGCCAAGCACTGGTGCTATCTCTGGCCAATCTA



Found at i:71379 original size:22 final size:24

Alignment explanation


    Indices: 71336--71384  Score: 75
    Period size: 23  Copynumber: 2.1  Consensus size: 24

      71326 TACTATCAAG

                             *      
      71336 CAAGCACTGGTGGCTATTTCT-GC
          1 CAAGCACTGGTGGCTATCTCTGGC

                                    
      71359 CAAGCACTGGT-GCTATCTCTGGC
          1 CAAGCACTGGTGGCTATCTCTGGC

               
      71382 CAA
          1 CAA

      71385 TCTACTAGTT


Statistics
Matches: 24,  Mismatches: 1, Indels: 2
        0.89            0.04        0.07

Matches are distributed among these distances:
  22    8  0.33
  23   16  0.67

ACGTcount: A:0.20, C:0.29, G:0.24, T:0.27


Consensus pattern (24 bp):   
CAAGCACTGGTGGCTATCTCTGGC

Left flanking sequence: Indices 70836 -- 71335
TCTAGACACGGTGAGCTACGTAAATGGAGAGCTACGTAAACAGAGAGCTACGTGAACGATGTAAA
CAATGGTTCGGTGGTAAACCCACCCATCCCACACTAAACTTTTCCGCCTTGGGTTTAAACCCCCT
CGTGACTTTGTGACTGTTGAGGTGGCTAGTGGCGAGATTGGGCTGCAAACCAAGGCTGCAAACCG
GGCGGCAAACAGGGGGCTAAACGCCACAAACAGGTTGTGCGAGCACAGACGTAGACGCTGGTGGT
CCGATTGGGCGGATAGCACCGGTGTCCGTTTTGGGAAGGCGCGTTGCGTGTGCTCGTATTCCCGT
ACCCAATCAGCCCGTGGATTGCTGTTTCTCGTAGAAGCACCGCGGGAATCACGGTTCCCACGCGG
AAATAGGCGGCTGGTGGGGCGATGGTCTGCTGCCAGCAAGGCCGGATGCCTTGCTCTGAAGTGAA
ATTCGAATGTGGTGGTAATTACGGTGGACCACTGGTACTATCAAG


Right flanking sequence: Indices 71385 -- 71884
TCTACTAGTTACAATCGCCACTAGTGCTCCTATTCATCTCTAGTGCTACTGGTTACTATCTCTGG
CCAATACCTTCGTAGATCTCGCCCAGCATCGAACCCCACCGAAGCGGGTGGAACACGGCGATACC
ACACAGCACGGCAACAATGCCAGCAATGCTCTGTCCCCCAATGCCTGTCCCCCAATGCCTGTGCC
CGAATGCCTCTGTGCCCCCAAAGCCTCGGACCCGCCCACCTCTCGGAACCGCCCACCTCTCGGCC
ACACAGATCCCACCGGATGCTAACCGTTCTCTCAGCAACCGTTTCCGCCAAAACGATGACACCAT
CGATGACCGGTTAGATGATCACACAGTGCCCCTTGTAACCACCCAACACCACTTGGCCACCATTG
GGCCACCACTAGACTCCCCCAAAACCCTACCCGCTGCATCCACCACCCACTGCATCCAACCCACT
GCATCCAACCCACTGCATCCACGTACTACCGGGGCCTGGGTGTCG



Found at i:71564 original size:14 final size:14

Alignment explanation


    Indices: 71538--71588  Score: 75
    Period size: 14  Copynumber: 3.6  Consensus size: 14

      71528 ACAATGCCAG

                           
      71538 CAATGCTCTGTCCCC
          1 CAATGC-CTGTCCCC

                          
      71553 CAATGCCTGTCCCC
          1 CAATGCCTGTCCCC

                      *   
      71567 CAATGCCTGTGCCC
          1 CAATGCCTGTCCCC

            *       
      71581 GAATGCCT
          1 CAATGCCT

      71589 CTGTGCCCCC


Statistics
Matches: 34,  Mismatches: 2, Indels: 1
        0.92            0.05        0.03

Matches are distributed among these distances:
  14   28  0.82
  15    6  0.18

ACGTcount: A:0.16, C:0.43, G:0.18, T:0.24


Consensus pattern (14 bp):   
CAATGCCTGTCCCC

Left flanking sequence: Indices 71038 -- 71537
AACAGGGGGCTAAACGCCACAAACAGGTTGTGCGAGCACAGACGTAGACGCTGGTGGTCCGATTG
GGCGGATAGCACCGGTGTCCGTTTTGGGAAGGCGCGTTGCGTGTGCTCGTATTCCCGTACCCAAT
CAGCCCGTGGATTGCTGTTTCTCGTAGAAGCACCGCGGGAATCACGGTTCCCACGCGGAAATAGG
CGGCTGGTGGGGCGATGGTCTGCTGCCAGCAAGGCCGGATGCCTTGCTCTGAAGTGAAATTCGAA
TGTGGTGGTAATTACGGTGGACCACTGGTACTATCAAGCAAGCACTGGTGGCTATTTCTGCCAAG
CACTGGTGCTATCTCTGGCCAATCTACTAGTTACAATCGCCACTAGTGCTCCTATTCATCTCTAG
TGCTACTGGTTACTATCTCTGGCCAATACCTTCGTAGATCTCGCCCAGCATCGAACCCCACCGAA
GCGGGTGGAACACGGCGATACCACACAGCACGGCAACAATGCCAG


Right flanking sequence: Indices 71589 -- 72088
CTGTGCCCCCAAAGCCTCGGACCCGCCCACCTCTCGGAACCGCCCACCTCTCGGCCACACAGATC
CCACCGGATGCTAACCGTTCTCTCAGCAACCGTTTCCGCCAAAACGATGACACCATCGATGACCG
GTTAGATGATCACACAGTGCCCCTTGTAACCACCCAACACCACTTGGCCACCATTGGGCCACCAC
TAGACTCCCCCAAAACCCTACCCGCTGCATCCACCACCCACTGCATCCAACCCACTGCATCCAAC
CCACTGCATCCACGTACTACCGGGGCCTGGGTGTCGTGCCCGGTTCATAACCAGCTGCAACCCGC
ACCCAACTGCAGAACTGGGTTCCCTGGTGGTACAAACCACACGATTACGTCTACCCCTAACCTAC
ACCGGACCATATCCACGTAACCAAACCACAACCCATAGCCACCCACCAACACCACCCACCACACC
ACCAACCACACCTCTACCCCTCTCTTTTCATCCCCACTCTTCCCG



Found at i:71624 original size:17 final size:17

Alignment explanation


    Indices: 71604--71642  Score: 69
    Period size: 17  Copynumber: 2.3  Consensus size: 17

      71594 CCCCCAAAGC

                  *          
      71604 CTCGGACCCGCCCACCT
          1 CTCGGAACCGCCCACCT

                             
      71621 CTCGGAACCGCCCACCT
          1 CTCGGAACCGCCCACCT

                 
      71638 CTCGG
          1 CTCGG

      71643 CCACACAGAT


Statistics
Matches: 21,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  17   21  1.00

ACGTcount: A:0.13, C:0.54, G:0.21, T:0.13


Consensus pattern (17 bp):   
CTCGGAACCGCCCACCT

Left flanking sequence: Indices 71104 -- 71603
GCGGATAGCACCGGTGTCCGTTTTGGGAAGGCGCGTTGCGTGTGCTCGTATTCCCGTACCCAATC
AGCCCGTGGATTGCTGTTTCTCGTAGAAGCACCGCGGGAATCACGGTTCCCACGCGGAAATAGGC
GGCTGGTGGGGCGATGGTCTGCTGCCAGCAAGGCCGGATGCCTTGCTCTGAAGTGAAATTCGAAT
GTGGTGGTAATTACGGTGGACCACTGGTACTATCAAGCAAGCACTGGTGGCTATTTCTGCCAAGC
ACTGGTGCTATCTCTGGCCAATCTACTAGTTACAATCGCCACTAGTGCTCCTATTCATCTCTAGT
GCTACTGGTTACTATCTCTGGCCAATACCTTCGTAGATCTCGCCCAGCATCGAACCCCACCGAAG
CGGGTGGAACACGGCGATACCACACAGCACGGCAACAATGCCAGCAATGCTCTGTCCCCCAATGC
CTGTCCCCCAATGCCTGTGCCCGAATGCCTCTGTGCCCCCAAAGC


Right flanking sequence: Indices 71643 -- 72142
CCACACAGATCCCACCGGATGCTAACCGTTCTCTCAGCAACCGTTTCCGCCAAAACGATGACACC
ATCGATGACCGGTTAGATGATCACACAGTGCCCCTTGTAACCACCCAACACCACTTGGCCACCAT
TGGGCCACCACTAGACTCCCCCAAAACCCTACCCGCTGCATCCACCACCCACTGCATCCAACCCA
CTGCATCCAACCCACTGCATCCACGTACTACCGGGGCCTGGGTGTCGTGCCCGGTTCATAACCAG
CTGCAACCCGCACCCAACTGCAGAACTGGGTTCCCTGGTGGTACAAACCACACGATTACGTCTAC
CCCTAACCTACACCGGACCATATCCACGTAACCAAACCACAACCCATAGCCACCCACCAACACCA
CCCACCACACCACCAACCACACCTCTACCCCTCTCTTTTCATCCCCACTCTTCCCGTCCCCTCTC
GTCCCTTCTCATCTCGCACCACTTGTCACCAGTTTCTTTTCTGTA



Found at i:71838 original size:14 final size:14

Alignment explanation


    Indices: 71803--71860  Score: 89
    Period size: 14  Copynumber: 4.0  Consensus size: 14

      71793 CCAAAACCCT

                *         
      71803 ACCCGCTGCATCCA
          1 ACCCACTGCATCCA

                            
      71817 CCACCCACTGCATCCA
          1 --ACCCACTGCATCCA

                          
      71833 ACCCACTGCATCCA
          1 ACCCACTGCATCCA

                          
      71847 ACCCACTGCATCCA
          1 ACCCACTGCATCCA

      71861 CGTACTACCG


Statistics
Matches: 41,  Mismatches: 1, Indels: 2
        0.93            0.02        0.05

Matches are distributed among these distances:
  14   28  0.68
  16   13  0.32

ACGTcount: A:0.26, C:0.52, G:0.09, T:0.14


Consensus pattern (14 bp):   
ACCCACTGCATCCA

Left flanking sequence: Indices 71303 -- 71802
TGGTAATTACGGTGGACCACTGGTACTATCAAGCAAGCACTGGTGGCTATTTCTGCCAAGCACTG
GTGCTATCTCTGGCCAATCTACTAGTTACAATCGCCACTAGTGCTCCTATTCATCTCTAGTGCTA
CTGGTTACTATCTCTGGCCAATACCTTCGTAGATCTCGCCCAGCATCGAACCCCACCGAAGCGGG
TGGAACACGGCGATACCACACAGCACGGCAACAATGCCAGCAATGCTCTGTCCCCCAATGCCTGT
CCCCCAATGCCTGTGCCCGAATGCCTCTGTGCCCCCAAAGCCTCGGACCCGCCCACCTCTCGGAA
CCGCCCACCTCTCGGCCACACAGATCCCACCGGATGCTAACCGTTCTCTCAGCAACCGTTTCCGC
CAAAACGATGACACCATCGATGACCGGTTAGATGATCACACAGTGCCCCTTGTAACCACCCAACA
CCACTTGGCCACCATTGGGCCACCACTAGACTCCCCCAAAACCCT


Right flanking sequence: Indices 71861 -- 72360
CGTACTACCGGGGCCTGGGTGTCGTGCCCGGTTCATAACCAGCTGCAACCCGCACCCAACTGCAG
AACTGGGTTCCCTGGTGGTACAAACCACACGATTACGTCTACCCCTAACCTACACCGGACCATAT
CCACGTAACCAAACCACAACCCATAGCCACCCACCAACACCACCCACCACACCACCAACCACACC
TCTACCCCTCTCTTTTCATCCCCACTCTTCCCGTCCCCTCTCGTCCCTTCTCATCTCGCACCACT
TGTCACCAGTTTCTTTTCTGTACCCCTCTTGCAAAGCCTCGATCGGCAAGCGTGCCCGAGCAGAC
GACAGCAGGCAGTTCCGACGCAGCTGCACCCACCGCTGCAACCGCAGGGCGGCCGGTGGCATGAT
CGAGCCCAAACGAAGCCGTCCGTTCGCCACCTACTCTATATAATCCCCACCCTTCCCTCTACGTA
ATCCCACCCTATCTAGTAGCATCTGGCCCGCCAGAAGTAGCCTGT



Found at i:72044 original size:12 final size:12

Alignment explanation


    Indices: 72017--72055  Score: 60
    Period size: 12  Copynumber: 3.2  Consensus size: 12

      72007 CAACCCATAG

                         
      72017 CCACCCACCAACA
          1 CCACCCACC-ACA

                        
      72030 CCACCCACCACA
          1 CCACCCACCACA

                 *      
      72042 CCACCAACCACA
          1 CCACCCACCACA

              
      72054 CC
          1 CC

      72056 TCTACCCCTC


Statistics
Matches: 25,  Mismatches: 1, Indels: 1
        0.93            0.04        0.04

Matches are distributed among these distances:
  12   16  0.64
  13    9  0.36

ACGTcount: A:0.36, C:0.64, G:0.00, T:0.00


Consensus pattern (12 bp):   
CCACCCACCACA

Left flanking sequence: Indices 71517 -- 72016
ACAGCACGGCAACAATGCCAGCAATGCTCTGTCCCCCAATGCCTGTCCCCCAATGCCTGTGCCCG
AATGCCTCTGTGCCCCCAAAGCCTCGGACCCGCCCACCTCTCGGAACCGCCCACCTCTCGGCCAC
ACAGATCCCACCGGATGCTAACCGTTCTCTCAGCAACCGTTTCCGCCAAAACGATGACACCATCG
ATGACCGGTTAGATGATCACACAGTGCCCCTTGTAACCACCCAACACCACTTGGCCACCATTGGG
CCACCACTAGACTCCCCCAAAACCCTACCCGCTGCATCCACCACCCACTGCATCCAACCCACTGC
ATCCAACCCACTGCATCCACGTACTACCGGGGCCTGGGTGTCGTGCCCGGTTCATAACCAGCTGC
AACCCGCACCCAACTGCAGAACTGGGTTCCCTGGTGGTACAAACCACACGATTACGTCTACCCCT
AACCTACACCGGACCATATCCACGTAACCAAACCACAACCCATAG


Right flanking sequence: Indices 72056 -- 72555
TCTACCCCTCTCTTTTCATCCCCACTCTTCCCGTCCCCTCTCGTCCCTTCTCATCTCGCACCACT
TGTCACCAGTTTCTTTTCTGTACCCCTCTTGCAAAGCCTCGATCGGCAAGCGTGCCCGAGCAGAC
GACAGCAGGCAGTTCCGACGCAGCTGCACCCACCGCTGCAACCGCAGGGCGGCCGGTGGCATGAT
CGAGCCCAAACGAAGCCGTCCGTTCGCCACCTACTCTATATAATCCCCACCCTTCCCTCTACGTA
ATCCCACCCTATCTAGTAGCATCTGGCCCGCCAGAAGTAGCCTGTTCCAGCCCGTTTCACGACTT
GACAGGTCGACACAGCTGACAGTGACACAGTGGCAACCCGCTACAGCTGACATCAGCCAACCGGG
CACACCCAGCGTTTAACTACGGCTTCTGAGCCTCCCCTCTCACGCACCATATACGAACCGGAGGT
ACGAACGGCCCAACAAAGTGTATTCAGGCGCCCATCCCCCACCGC



Found at i:73265 original size:21 final size:21

Alignment explanation


    Indices: 73240--73294  Score: 85
    Period size: 21  Copynumber: 2.6  Consensus size: 21

      73230 CACCCGTTTT

                                 
      73240 CCACGGCGTCCACGGCGTCCA
          1 CCACGGCGTCCACGGCGTCCA

                                  
      73261 CCACGGCGTCTC-CGGCGTCCA
          1 CCACGGCGTC-CACGGCGTCCA

                *        
      73282 CCACCGCGTCCAC
          1 CCACGGCGTCCAC

      73295 CACGCCCTAC


Statistics
Matches: 31,  Mismatches: 1, Indels: 4
        0.86            0.03        0.11

Matches are distributed among these distances:
  20    1  0.03
  21   29  0.94
  22    1  0.03

ACGTcount: A:0.13, C:0.51, G:0.25, T:0.11


Consensus pattern (21 bp):   
CCACGGCGTCCACGGCGTCCA

Left flanking sequence: Indices 72740 -- 73239
GGGCAAAAAAAACCACCAGGCCCACCCGGGCACCCCCCGCCGCGCCAGCCCGCGCCCCACCACCG
CCTCCGCCCGCTTCCCGTCCCCGTCCCGGCCTCCCGCCGCGACACCGGTTGCTATGGGCCCTTGT
CCTCACCGAAAAAAGACGGCCAAAAAAAGTCAAAAAACCTTTGAGATCAGCCCGTTCCATGACCC
TGAGGGGAGCCCTCTAGCCACACCACCGAACAAAACCATGTCTGCCGCGCGTGTCCCCGCTGCCG
ACACGCCGCCCGACCCGCCTGGAGCGCCCCTGGGCCAGAATCCCGACCCGGGACCCCCTACACCA
CCGAGGCTTGGCGAGTCCGGTGGAGAAAAACCGTCCAGCACGCTGAACCACCCCCAAAACGCCCA
AGCCACGGCCATCCCGGGCACGCTTGGGTCCGTCCCTGCCGCGTGCTGCCCGTCGCTGGCGGCGT
ACGCGTCGCTGGCGCCGTCGGGCCCCCCGTCGGGCCACCCGTTTT


Right flanking sequence: Indices 73295 -- 73794
CACGCCCTACGCGCCCACCACCGCCGCCACCACGCCCTACCCGACCCGTTCGCGCGGGCTGTCGA
CCCAGACGTCGCCCACATCCGCCCACCCGCCTCCGATGGCCCATGGCCACCTGACGCTGTGTGTG
CTCACCACGCGGGCTGCGCCTGCGGCCGGGCGCTCGCTGCTGACGGGGCTGGGTATTTTGGTGAT
CAATGGGGGTGTCTCTGACCACGCCCCGTGTCCGGGGATGGGGACCACTCCCGGGCGGGCCAGTG
CCACCACCGGGGTGTCAAGGGAGTTGGTAGAAAGCAAGGAATCTAAAGAGAAGGAGTCCAAAGAG
GCTCAAGAGTTTAATGGCTCGAAGGGGTTTTCTGGTCTGGACACCTTTGGTGAGACGAAAGGCTC
TAACTTTTCTCTGGACGCCGCATTTTCTGGGTTGAAAGACACTACGAACTACGCCAAGGATGCAT
TTGGGAAGGACAAGGAGTTTCAAGACTCGAAAGACTCGAAGGATA



Found at i:73266 original size:12 final size:12

Alignment explanation


    Indices: 73249--73298  Score: 61
    Period size: 12  Copynumber: 4.4  Consensus size: 12

      73239 TCCACGGCGT

                        
      73249 CCACGGCGTCCA
          1 CCACGGCGTCCA

                        
      73261 CCACGGCGT-C-
          1 CCACGGCGTCCA

            *           
      73271 TC-CGGCGTCCA
          1 CCACGGCGTCCA

                *       
      73282 CCACCGCGTCCA
          1 CCACGGCGTCCA

                 
      73294 CCACG
          1 CCACG

      73299 CCCTACGCGC


Statistics
Matches: 31,  Mismatches: 4, Indels: 6
        0.76            0.10        0.15

Matches are distributed among these distances:
   9    6  0.19
  10    2  0.06
  11    2  0.06
  12   21  0.68

ACGTcount: A:0.14, C:0.52, G:0.24, T:0.10


Consensus pattern (12 bp):   
CCACGGCGTCCA

Left flanking sequence: Indices 72749 -- 73248
AAACCACCAGGCCCACCCGGGCACCCCCCGCCGCGCCAGCCCGCGCCCCACCACCGCCTCCGCCC
GCTTCCCGTCCCCGTCCCGGCCTCCCGCCGCGACACCGGTTGCTATGGGCCCTTGTCCTCACCGA
AAAAAGACGGCCAAAAAAAGTCAAAAAACCTTTGAGATCAGCCCGTTCCATGACCCTGAGGGGAG
CCCTCTAGCCACACCACCGAACAAAACCATGTCTGCCGCGCGTGTCCCCGCTGCCGACACGCCGC
CCGACCCGCCTGGAGCGCCCCTGGGCCAGAATCCCGACCCGGGACCCCCTACACCACCGAGGCTT
GGCGAGTCCGGTGGAGAAAAACCGTCCAGCACGCTGAACCACCCCCAAAACGCCCAAGCCACGGC
CATCCCGGGCACGCTTGGGTCCGTCCCTGCCGCGTGCTGCCCGTCGCTGGCGGCGTACGCGTCGC
TGGCGCCGTCGGGCCCCCCGTCGGGCCACCCGTTTTCCACGGCGT


Right flanking sequence: Indices 73299 -- 73798
CCCTACGCGCCCACCACCGCCGCCACCACGCCCTACCCGACCCGTTCGCGCGGGCTGTCGACCCA
GACGTCGCCCACATCCGCCCACCCGCCTCCGATGGCCCATGGCCACCTGACGCTGTGTGTGCTCA
CCACGCGGGCTGCGCCTGCGGCCGGGCGCTCGCTGCTGACGGGGCTGGGTATTTTGGTGATCAAT
GGGGGTGTCTCTGACCACGCCCCGTGTCCGGGGATGGGGACCACTCCCGGGCGGGCCAGTGCCAC
CACCGGGGTGTCAAGGGAGTTGGTAGAAAGCAAGGAATCTAAAGAGAAGGAGTCCAAAGAGGCTC
AAGAGTTTAATGGCTCGAAGGGGTTTTCTGGTCTGGACACCTTTGGTGAGACGAAAGGCTCTAAC
TTTTCTCTGGACGCCGCATTTTCTGGGTTGAAAGACACTACGAACTACGCCAAGGATGCATTTGG
GAAGGACAAGGAGTTTCAAGACTCGAAAGACTCGAAGGATATCGC



Found at i:73889 original size:18 final size:18

Alignment explanation


    Indices: 73845--73879  Score: 70
    Period size: 18  Copynumber: 1.9  Consensus size: 18

      73835 GCACAGAGAC

                              
      73845 CCGAACCAGCCCAGGGAT
          1 CCGAACCAGCCCAGGGAT

                             
      73863 CCGAACCAGCCCAGGGA
          1 CCGAACCAGCCCAGGGA

      73880 CGCTAACCAG


Statistics
Matches: 17,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  18   17  1.00

ACGTcount: A:0.29, C:0.40, G:0.29, T:0.03


Consensus pattern (18 bp):   
CCGAACCAGCCCAGGGAT

Left flanking sequence: Indices 73345 -- 73844
CGCGCGGGCTGTCGACCCAGACGTCGCCCACATCCGCCCACCCGCCTCCGATGGCCCATGGCCAC
CTGACGCTGTGTGTGCTCACCACGCGGGCTGCGCCTGCGGCCGGGCGCTCGCTGCTGACGGGGCT
GGGTATTTTGGTGATCAATGGGGGTGTCTCTGACCACGCCCCGTGTCCGGGGATGGGGACCACTC
CCGGGCGGGCCAGTGCCACCACCGGGGTGTCAAGGGAGTTGGTAGAAAGCAAGGAATCTAAAGAG
AAGGAGTCCAAAGAGGCTCAAGAGTTTAATGGCTCGAAGGGGTTTTCTGGTCTGGACACCTTTGG
TGAGACGAAAGGCTCTAACTTTTCTCTGGACGCCGCATTTTCTGGGTTGAAAGACACTACGAACT
ACGCCAAGGATGCATTTGGGAAGGACAAGGAGTTTCAAGACTCGAAAGACTCGAAGGATATCGCC
AGCTTTACCAAGGGCTTTAAGGACTTCAGAGACCTGCACAGAGAC


Right flanking sequence: Indices 73880 -- 74379
CGCTAACCAGTCTAACCATCCCAGGGACGCTAACCACCCCAGGGATTCTAACCAGTTCAAGGAAA
GAGACCCCTCGCGAGACCCCTACGGTAGAGACCCAAACAGAGACTCGCGAGACTCGCGTGACTCG
CGTGACTCCTTCCACCCGAAGGACCCGCTCGTCCGCGGCCCGCCCCCGCTGATTCCCCCCCACCT
CAACGGCCACCACGTCCTCCTGGGCCACCTGCCCCACCAGCCGGGCTACCACAGCCTCAGCCACA
CCCCCAGCCTGGCCCTGGCCCCGGCGCTGCGCCTCATGCTGCCCACCCCGTCCGTCAAGGAGACC
TCGCGGGTCTACCTCGAGTACGACCGCGCCACCCGCCGCCGGGTGCTCAACACCTACGAGATCCT
CCTCGAGATCGGCCGCGGCGAGCACGGCAAGGTCAAACTCGCGAAGGACCTTGCGCTGAACCAGT
TGGTAGCCATCAAGATCCTCAACCGCAAGCTGAAGCGGCCCCAGC



Found at i:73915 original size:45 final size:45

Alignment explanation


    Indices: 73848--73935  Score: 115
    Period size: 45  Copynumber: 2.0  Consensus size: 45

      73838 CAGAGACCCG

                                   *                     
      73848 AACCAGCCCAGGGATCCGAACCAGCCCAGGGACGCTAACCAGTCT
          1 AACCAGCCCAGGGATCCGAACCACCCCAGGGACGCTAACCAGTCT

                 *            *              **         
      73893 AACCATCCCAGGGA-CGCTAACCACCCCAGGGATTCTAACCAGT
          1 AACCAGCCCAGGGATC-CGAACCACCCCAGGGACGCTAACCAGT

      73936 TCAAGGAAAG


Statistics
Matches: 37,  Mismatches: 5, Indels: 2
        0.84            0.11        0.05

Matches are distributed among these distances:
  44    1  0.03
  45   36  0.97

ACGTcount: A:0.30, C:0.38, G:0.22, T:0.11


Consensus pattern (45 bp):   
AACCAGCCCAGGGATCCGAACCACCCCAGGGACGCTAACCAGTCT

Left flanking sequence: Indices 73348 -- 73847
GCGGGCTGTCGACCCAGACGTCGCCCACATCCGCCCACCCGCCTCCGATGGCCCATGGCCACCTG
ACGCTGTGTGTGCTCACCACGCGGGCTGCGCCTGCGGCCGGGCGCTCGCTGCTGACGGGGCTGGG
TATTTTGGTGATCAATGGGGGTGTCTCTGACCACGCCCCGTGTCCGGGGATGGGGACCACTCCCG
GGCGGGCCAGTGCCACCACCGGGGTGTCAAGGGAGTTGGTAGAAAGCAAGGAATCTAAAGAGAAG
GAGTCCAAAGAGGCTCAAGAGTTTAATGGCTCGAAGGGGTTTTCTGGTCTGGACACCTTTGGTGA
GACGAAAGGCTCTAACTTTTCTCTGGACGCCGCATTTTCTGGGTTGAAAGACACTACGAACTACG
CCAAGGATGCATTTGGGAAGGACAAGGAGTTTCAAGACTCGAAAGACTCGAAGGATATCGCCAGC
TTTACCAAGGGCTTTAAGGACTTCAGAGACCTGCACAGAGACCCG


Right flanking sequence: Indices 73936 -- 74435
TCAAGGAAAGAGACCCCTCGCGAGACCCCTACGGTAGAGACCCAAACAGAGACTCGCGAGACTCG
CGTGACTCGCGTGACTCCTTCCACCCGAAGGACCCGCTCGTCCGCGGCCCGCCCCCGCTGATTCC
CCCCCACCTCAACGGCCACCACGTCCTCCTGGGCCACCTGCCCCACCAGCCGGGCTACCACAGCC
TCAGCCACACCCCCAGCCTGGCCCTGGCCCCGGCGCTGCGCCTCATGCTGCCCACCCCGTCCGTC
AAGGAGACCTCGCGGGTCTACCTCGAGTACGACCGCGCCACCCGCCGCCGGGTGCTCAACACCTA
CGAGATCCTCCTCGAGATCGGCCGCGGCGAGCACGGCAAGGTCAAACTCGCGAAGGACCTTGCGC
TGAACCAGTTGGTAGCCATCAAGATCCTCAACCGCAAGCTGAAGCGGCCCCAGCTCCGCGCCGAG
GGCTTCCTGTACTACGGCGACCTGAACCCACCCACGCTCCTGCCA



Found at i:73930 original size:18 final size:18

Alignment explanation


    Indices: 73890--73933  Score: 61
    Period size: 18  Copynumber: 2.4  Consensus size: 18

      73880 CGCTAACCAG

                    *         
      73890 TCTAACCATCCCAGGGAC
          1 TCTAACCACCCCAGGGAC

            *                *
      73908 GCTAACCACCCCAGGGAT
          1 TCTAACCACCCCAGGGAC

                    
      73926 TCTAACCA
          1 TCTAACCA

      73934 GTTCAAGGAA


Statistics
Matches: 22,  Mismatches: 4, Indels: 0
        0.85            0.15        0.00

Matches are distributed among these distances:
  18   22  1.00

ACGTcount: A:0.30, C:0.39, G:0.16, T:0.16


Consensus pattern (18 bp):   
TCTAACCACCCCAGGGAC

Left flanking sequence: Indices 73390 -- 73889
CTCCGATGGCCCATGGCCACCTGACGCTGTGTGTGCTCACCACGCGGGCTGCGCCTGCGGCCGGG
CGCTCGCTGCTGACGGGGCTGGGTATTTTGGTGATCAATGGGGGTGTCTCTGACCACGCCCCGTG
TCCGGGGATGGGGACCACTCCCGGGCGGGCCAGTGCCACCACCGGGGTGTCAAGGGAGTTGGTAG
AAAGCAAGGAATCTAAAGAGAAGGAGTCCAAAGAGGCTCAAGAGTTTAATGGCTCGAAGGGGTTT
TCTGGTCTGGACACCTTTGGTGAGACGAAAGGCTCTAACTTTTCTCTGGACGCCGCATTTTCTGG
GTTGAAAGACACTACGAACTACGCCAAGGATGCATTTGGGAAGGACAAGGAGTTTCAAGACTCGA
AAGACTCGAAGGATATCGCCAGCTTTACCAAGGGCTTTAAGGACTTCAGAGACCTGCACAGAGAC
CCGAACCAGCCCAGGGATCCGAACCAGCCCAGGGACGCTAACCAG


Right flanking sequence: Indices 73934 -- 74433
GTTCAAGGAAAGAGACCCCTCGCGAGACCCCTACGGTAGAGACCCAAACAGAGACTCGCGAGACT
CGCGTGACTCGCGTGACTCCTTCCACCCGAAGGACCCGCTCGTCCGCGGCCCGCCCCCGCTGATT
CCCCCCCACCTCAACGGCCACCACGTCCTCCTGGGCCACCTGCCCCACCAGCCGGGCTACCACAG
CCTCAGCCACACCCCCAGCCTGGCCCTGGCCCCGGCGCTGCGCCTCATGCTGCCCACCCCGTCCG
TCAAGGAGACCTCGCGGGTCTACCTCGAGTACGACCGCGCCACCCGCCGCCGGGTGCTCAACACC
TACGAGATCCTCCTCGAGATCGGCCGCGGCGAGCACGGCAAGGTCAAACTCGCGAAGGACCTTGC
GCTGAACCAGTTGGTAGCCATCAAGATCCTCAACCGCAAGCTGAAGCGGCCCCAGCTCCGCGCCG
AGGGCTTCCTGTACTACGGCGACCTGAACCCACCCACGCTCCTGC




Done.