Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold45
Parameters: 2 7 7 80 10 50 500
Length:  47595

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
130--169
11
3.6
11
79
0
53
30
0
65
5
1.14
330--391
10
5.8
10
75
17
54
6
0
50
43
1.28
2907--2976
13
5.2
13
81
8
77
32
21
37
8
1.84
2927--2978
15
3.7
14
89
5
54
36
23
34
5
1.79
2917--2976
28
2.2
26
85
5
75
33
21
38
6
1.80
7195--7260
20
3.3
20
84
0
78
24
21
15
39
1.91
10405--10435
15
2.1
15
100
0
62
48
25
12
12
1.77
11076--11144
30
2.3
31
92
2
113
15
18
39
26
1.91
11375--11415
20
2.0
21
90
4
66
29
24
7
39
1.82
12756--12780
12
2.1
12
100
0
50
32
8
36
24
1.84
13005--13046
11
3.8
11
93
0
57
38
11
38
11
1.79
20629--20689
21
3.0
20
76
9
61
21
65
9
3
1.37
21618--21642
2
12.5
2
100
0
50
48
0
52
0
1.00
21812--21859
15
3.3
15
77
13
55
33
2
45
18
1.61
21802--21859
29
2.0
30
89
3
91
37
1
43
17
1.59
22242--22266
12
2.1
12
100
0
50
56
28
0
16
1.41
26827--26880
11
5.0
11
84
4
74
31
31
16
20
1.95
26826--26880
21
2.5
22
88
5
85
30
30
16
21
1.95
29585--29613
10
2.7
11
94
5
51
0
0
62
37
0.96
29659--29684
11
2.4
11
100
0
52
57
0
34
7
1.27
35097--35158
12
5.7
11
85
14
69
12
29
40
17
1.87
35120--35161
9
4.3
9
83
16
57
7
30
40
21
1.80
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
36024--36048
9
2.8
9
100
0
50
48
12
32
8
1.69
43939--43968
15
2.0
15
93
0
51
30
23
20
26
1.98
44803--44848
21
2.2
21
92
7
76
13
17
50
19
1.78
45242--46279
123
8.2
124
68
12
534
23
23
32
20
1.98
45280--46278
255
3.9
255
90
1
1478
23
23
32
20
1.98
46711--47595
147
6.1
144
82
5
876
26
23
28
21
1.99
46848--47555
288
2.5
281
86
3
959
26
23
28
21
1.99
46851--47558
141
4.9
141
85
4
882
26
23
28
21
1.99

Tables:   1

The End!