Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: scaffold2
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 19480
ACGTcount: A:0.24, C:0.28, G:0.26, T:0.22
Found at i:3505 original size:10 final size:10
Alignment explanation
Indices: 3490--3597 Score: 108
Period size: 10 Copynumber: 10.4 Consensus size: 10
3480 ATACATTCCT
*
3490 ACACCCGCAC
1 ACACCCACAC
3500 ACACCCACAC
1 ACACCCACAC
*
3510 ACACCCAGAC
1 ACACCCACAC
*
3520 ACACCCAAAC
1 ACACCCACAC
**
3530 ACACCCAGGC
1 ACACCCACAC
*
3540 ACACTCAATTCAC
1 ACAC-CCA--CAC
3553 ACACCCAACAC
1 ACACCC-ACAC
*
3564 ACGCCCACAC
1 ACACCCACAC
3574 ACACCCACAC
1 ACACCCACAC
*
3584 ACACACACAC
1 ACACCCACAC
3594 ACAC
1 ACAC
3598 TAAACTCTAT
Statistics
Matches: 82, Mismatches: 12, Indels: 8
0.80 0.12 0.08
Matches are distributed among these distances:
10 65 0.79
11 10 0.12
12 1 0.01
13 6 0.07
ACGTcount: A:0.40, C:0.53, G:0.05, T:0.03
Consensus pattern (10 bp):
ACACCCACAC
Left flanking sequence: Indices 2990 -- 3489
AATCTGATTGTTTCGCCGAGAGCAACCTGTGCCGCTAAGAGAGCCCGTGAAGCAAAGGACTCGGT
CCAAAGGCGCACCCAACGCACCCTGGTCAATACTATTGTTAAGTTTACGAGGTATCTACGTAGAA
GAGCCCCATTAGTGGTATCTTTGTCCATTGTACCCCTTGCGATCAATAAAACTGTGGCTCACGCT
TATCGCAAATCGTCGGAAGAATGGGCCTATAAGCGGGAGGACGGGCTCCGGGGCAGTGCGACGAT
CTGTCCTCGCAACCTGTGGCTCGTGGCCATGCCTATTCAAGGTTGCAACACGCGATCAGGAGGGT
CTTCGACGTCATACACAATAGATCGACGTAATCACGCTGGATAAGATTTAGGTTATGATACCAAG
ATAACCGGGTAACGAACGAAACATCTCTTCAAGGTGTTCAAACAAATCACGTTTTATCGATAGGA
TATCTCTTCCAATGAATCAAGCTGATCAATGGCTAATACATTCCT
Right flanking sequence: Indices 3598 -- 4097
TAAACTCTATTAGCTTACTATTTACAAGCTTCTAACTACTCCACCTTGGCTGCCTCCTTGGTCAA
CCCCGCCACACACTTCCACATCAACGCGAGCTCGTCGTCCAGCGCGTACCCCAGCGTCGCCCACC
GGATACGGCCCTCGTGGTCCAACAAGTACACGTAGCCCAGACACATGTTGTCGCACTTGAGCTTT
TCCCGGATGTCGTAAGGGAACACATGCTCGGGAAGCACAAAGTAGCGGTCCCAGCGGTCGTGGGG
CAAAGTACGTCGGATGTGGCCCTTGCTCATGTTGATGATGAACCCCTTCAACCAGTTCTGGGGGA
TGTTGATGTCAATCACCTGAGCCTCGGGGTACTGCTCCTTGAACTTGTTGTGGTAGTTTTCGCCC
TCCAAAAAGTCCTTGAACCAGGTGTTGACACAGTTTTCACCGGAAACCGTCAGGTACACACGCAC
AATGTTGACGGGCCCCAACACGTCAAACAAGCTGGTGGGCCCCAC
Found at i:3565 original size:2 final size:2
Alignment explanation
Indices: 3550--3597 Score: 53
Period size: 2 Copynumber: 24.5 Consensus size: 2
3540 ACACTCAATT
* * * *
3550 CA CA CA CC CA -A CA CA CG CC CA CA CA CA CC CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
3591 CA CA CA C
1 CA CA CA C
3598 TAAACTCTAT
Statistics
Matches: 38, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
1 1 0.03
2 37 0.97
ACGTcount: A:0.42, C:0.56, G:0.02, T:0.00
Consensus pattern (2 bp):
CA
Left flanking sequence: Indices 3050 -- 3549
TCGGTCCAAAGGCGCACCCAACGCACCCTGGTCAATACTATTGTTAAGTTTACGAGGTATCTACG
TAGAAGAGCCCCATTAGTGGTATCTTTGTCCATTGTACCCCTTGCGATCAATAAAACTGTGGCTC
ACGCTTATCGCAAATCGTCGGAAGAATGGGCCTATAAGCGGGAGGACGGGCTCCGGGGCAGTGCG
ACGATCTGTCCTCGCAACCTGTGGCTCGTGGCCATGCCTATTCAAGGTTGCAACACGCGATCAGG
AGGGTCTTCGACGTCATACACAATAGATCGACGTAATCACGCTGGATAAGATTTAGGTTATGATA
CCAAGATAACCGGGTAACGAACGAAACATCTCTTCAAGGTGTTCAAACAAATCACGTTTTATCGA
TAGGATATCTCTTCCAATGAATCAAGCTGATCAATGGCTAATACATTCCTACACCCGCACACACC
CACACACACCCAGACACACCCAAACACACCCAGGCACACTCAATT
Right flanking sequence: Indices 3598 -- 4097
TAAACTCTATTAGCTTACTATTTACAAGCTTCTAACTACTCCACCTTGGCTGCCTCCTTGGTCAA
CCCCGCCACACACTTCCACATCAACGCGAGCTCGTCGTCCAGCGCGTACCCCAGCGTCGCCCACC
GGATACGGCCCTCGTGGTCCAACAAGTACACGTAGCCCAGACACATGTTGTCGCACTTGAGCTTT
TCCCGGATGTCGTAAGGGAACACATGCTCGGGAAGCACAAAGTAGCGGTCCCAGCGGTCGTGGGG
CAAAGTACGTCGGATGTGGCCCTTGCTCATGTTGATGATGAACCCCTTCAACCAGTTCTGGGGGA
TGTTGATGTCAATCACCTGAGCCTCGGGGTACTGCTCCTTGAACTTGTTGTGGTAGTTTTCGCCC
TCCAAAAAGTCCTTGAACCAGGTGTTGACACAGTTTTCACCGGAAACCGTCAGGTACACACGCAC
AATGTTGACGGGCCCCAACACGTCAAACAAGCTGGTGGGCCCCAC
Found at i:4809 original size:11 final size:11
Alignment explanation
Indices: 4793--4875 Score: 60
Period size: 11 Copynumber: 6.9 Consensus size: 11
4783 AATTCCCCAA
4793 CCACCACCCGT
1 CCACCACCCGT
*
4804 CCACCACCACCCCT
1 ---CCACCACCCGT
4818 CCACCACCCCCCGT
1 CCACCA---CCCGT
4832 CCACACCACCCGT
1 -C-CACCACCCGT
4845 CCACCACCCGT
1 CCACCACCCGT
**
4856 CCACCGGCCG-
1 CCACCACCCGT
4866 CCACCACCCG
1 CCACCACCCG
4876 CTCCTGCACA
Statistics
Matches: 58, Mismatches: 6, Indels: 14
0.74 0.08 0.18
Matches are distributed among these distances:
10 8 0.14
11 24 0.41
12 1 0.02
13 5 0.09
14 14 0.24
15 1 0.02
16 5 0.09
ACGTcount: A:0.18, C:0.66, G:0.10, T:0.06
Consensus pattern (11 bp):
CCACCACCCGT
Left flanking sequence: Indices 4293 -- 4792
TCCGAGCGAGTATGTGTGGGACACCTTGCGGTTGAGGAGCACCGGGGTGTCTAGGCCAAACGGGC
GGGTGATGGCCATGGGCTTTTCGAGCGGCGGCTTGGACGCCTCCTTGAGGGTGGTCACAAACCGT
GGCAGCTTGTGGAGCGGCGCCAGCGTGGCGAACCGCGCGATGGCAAGACGGTTCATGGTGAGTCG
CACCGGAATGGTGAGCGAAGAGAAGGGTGGTGGGGTTACGTAGAGAGAGGCAGAACTGGGCCAGG
AAAAAACTCAAGAAAGGAACCGGAAGCCAGCCACTACGAATAGAAGAGAAACATAGTGTGTTATT
GTCCCGACATTGGCTGATACTGATAATTGACTCATGTTGCAATTACATTGCGAGCGCGGTTATTT
CCTCCGGTGTATCAAGACGTGAAAAGCAGCAAACCGAACACTTCACACCAACTTCCACATACGGC
CATCCTTACCAACACAGCACAACTGTCACCGCCACAATTCCCCAA
Right flanking sequence: Indices 4876 -- 5375
CTCCTGCACACACCCTCACTTTTTTTTGACCGACGTTAAACCTCTCCACCAGAACCCCATCCATA
TGTCGATCCCCCTCCTCAACGGGCTAGCCCACCAGCTGGTGGACCACGTGATGGAGGATCTTCTT
GTGCGCTTTGTCGTCAACTGTCCCGACGAAGACCTTCTGCTGATCGAACGCGTTTTTTTCCAGGT
GGAGGAGGCCCAGTGGTTCTACACAGACTTTGTCCGGTTGTTGGACCCCAAGTTGCCCCCGATGA
AAATGAAGCAGTTTGCGGGCAAGATGTTGGAAAAGGCCCCGCTCATCTGGAAGTGGGGCGATCCG
GGCGACGCCCTCGCCCGTTTTGGCCACTACAAGCTGACGATCCCCGTGCGCGGGGTGGCGTGCTT
CAATCCCGATTTCTCGAAGGTGCTTCTTGTCAAGGGCACCGACTCCAACCTGTGGTCGTTTCCCC
GAGGCAAAATCTCTAAGGGCGAGCTGGATATCGAGTGTGCGGTCC
Found at i:4809 original size:14 final size:14
Alignment explanation
Indices: 4792--4852 Score: 97
Period size: 14 Copynumber: 4.4 Consensus size: 14
4782 CAATTCCCCA
4792 ACCACCACCCGTCC
1 ACCACCACCCGTCC
*
4806 ACCACCACCCCTCC
1 ACCACCACCCGTCC
*
4820 ACCACCCCCCGTCC
1 ACCACCACCCGTCC
4834 A-CACCACCCGTCC
1 ACCACCACCCGTCC
4847 ACCACC
1 ACCACC
4853 CGTCCACCGG
Statistics
Matches: 42, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
13 12 0.29
14 30 0.71
ACGTcount: A:0.21, C:0.67, G:0.05, T:0.07
Consensus pattern (14 bp):
ACCACCACCCGTCC
Left flanking sequence: Indices 4292 -- 4791
CTCCGAGCGAGTATGTGTGGGACACCTTGCGGTTGAGGAGCACCGGGGTGTCTAGGCCAAACGGG
CGGGTGATGGCCATGGGCTTTTCGAGCGGCGGCTTGGACGCCTCCTTGAGGGTGGTCACAAACCG
TGGCAGCTTGTGGAGCGGCGCCAGCGTGGCGAACCGCGCGATGGCAAGACGGTTCATGGTGAGTC
GCACCGGAATGGTGAGCGAAGAGAAGGGTGGTGGGGTTACGTAGAGAGAGGCAGAACTGGGCCAG
GAAAAAACTCAAGAAAGGAACCGGAAGCCAGCCACTACGAATAGAAGAGAAACATAGTGTGTTAT
TGTCCCGACATTGGCTGATACTGATAATTGACTCATGTTGCAATTACATTGCGAGCGCGGTTATT
TCCTCCGGTGTATCAAGACGTGAAAAGCAGCAAACCGAACACTTCACACCAACTTCCACATACGG
CCATCCTTACCAACACAGCACAACTGTCACCGCCACAATTCCCCA
Right flanking sequence: Indices 4853 -- 5352
CGTCCACCGGCCGCCACCACCCGCTCCTGCACACACCCTCACTTTTTTTTGACCGACGTTAAACC
TCTCCACCAGAACCCCATCCATATGTCGATCCCCCTCCTCAACGGGCTAGCCCACCAGCTGGTGG
ACCACGTGATGGAGGATCTTCTTGTGCGCTTTGTCGTCAACTGTCCCGACGAAGACCTTCTGCTG
ATCGAACGCGTTTTTTTCCAGGTGGAGGAGGCCCAGTGGTTCTACACAGACTTTGTCCGGTTGTT
GGACCCCAAGTTGCCCCCGATGAAAATGAAGCAGTTTGCGGGCAAGATGTTGGAAAAGGCCCCGC
TCATCTGGAAGTGGGGCGATCCGGGCGACGCCCTCGCCCGTTTTGGCCACTACAAGCTGACGATC
CCCGTGCGCGGGGTGGCGTGCTTCAATCCCGATTTCTCGAAGGTGCTTCTTGTCAAGGGCACCGA
CTCCAACCTGTGGTCGTTTCCCCGAGGCAAAATCTCTAAGGGCGA
Found at i:6213 original size:18 final size:18
Alignment explanation
Indices: 6186--6223 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
6176 GCCACCGGCT
*
6186 CTGCGGGCGGGTCGGTGG
1 CTGCGAGCGGGTCGGTGG
6204 CTGCGAGCGGGTCGGTGG
1 CTGCGAGCGGGTCGGTGG
6222 CT
1 CT
6224 CCGCGTGAGC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.03, C:0.24, G:0.55, T:0.18
Consensus pattern (18 bp):
CTGCGAGCGGGTCGGTGG
Left flanking sequence: Indices 5686 -- 6185
GGAAATGGCCCTCAAGGAGTTGTTGGGGCTCACGAAGCCGTTGGAGAAGACCGACGACGCAGGCC
GCGAGTTGTTGAACATCTTGCAGGGCCCGCAAACCGGCCACGCCAAGACGCAGCCCCAGCCGCAC
CCGGGCCAGCCCGGCCCGCCTCCGATGATCCAGATCCCCCACTACGTGTACCAGCCGGTCCAGCA
GTTTTTGCCCGGTCCGATGCCGTTCCCGCCTATGCCCATGCAGTTTGCGCCGCCGCAACAGCCCC
CGAACCCGCAGCTGTTGCAGAAACCGACGATGAAGCCCGAGCTGAAGGAGTTGTTGCTGATCTTA
AACTCGCTGGGCACGCCCAAACGGTCGCGCGACGCCACGCCCACCGCGGGCCGCGACGCCAACCG
CCTGAAGGCCGACGAGCTCTTGCTGTTGTTCAAAAAGCCGTCGAAAAACCCTGTAGAAACGTCGC
CCGCGCCGCTGGTGGCGCTGGTGCCGCTGGTGGGAGCCACCGGCT
Right flanking sequence: Indices 6224 -- 6723
CCGCGTGAGCCCCTGACACAGCCGCGCGACGGCCCTGCTGGCGACTTGTTGTCGATTTTGCACCG
CAAGGGCCAGCTGCCCGCGCCGTTTGAGCCGCTGAACGAGTTGGAGGGGTCGATGCGCGGGTCCC
AGCCGGGCCCGAAGAAGGTGACGGTGTTGAAGCGGCTGGAGAACAAGAACGCCAACGATTTGTTG
TCGTTGTTGAAGCCGAAGAAGGAGGACGAGTCTGGTGAGGCCCAGGCTAAGGAGGCCCAGGCTAA
GGAGGTGCAGCCCAGGGAGGCCCAGCCCAGGGAGGCCCAGCCCAAGGAGTCTCCGTCGCAGGAGC
TTTTGGGGATGTTGAGAGGCAAGCCAGACACTCCTGCTCAGGGCGAGGCGGCTCAACCTCAGGCT
CAGGCTCAGGCCCAGTCTCAGTCTCACCCTGTCCAGTCTCAGTCTCAATTTTCCCAGCCCGAGTC
ACACCAGTCACCTACCCAGCCCGCTCAGCCCGCCCAGCCCGCTCA
Found at i:6473 original size:15 final size:15
Alignment explanation
Indices: 6455--6488 Score: 68
Period size: 15 Copynumber: 2.3 Consensus size: 15
6445 CGAGTCTGGT
6455 GAGGCCCAGGCTAAG
1 GAGGCCCAGGCTAAG
6470 GAGGCCCAGGCTAAG
1 GAGGCCCAGGCTAAG
6485 GAGG
1 GAGG
6489 TGCAGCCCAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.26, C:0.24, G:0.44, T:0.06
Consensus pattern (15 bp):
GAGGCCCAGGCTAAG
Left flanking sequence: Indices 5955 -- 6454
AGCTGTTGCAGAAACCGACGATGAAGCCCGAGCTGAAGGAGTTGTTGCTGATCTTAAACTCGCTG
GGCACGCCCAAACGGTCGCGCGACGCCACGCCCACCGCGGGCCGCGACGCCAACCGCCTGAAGGC
CGACGAGCTCTTGCTGTTGTTCAAAAAGCCGTCGAAAAACCCTGTAGAAACGTCGCCCGCGCCGC
TGGTGGCGCTGGTGCCGCTGGTGGGAGCCACCGGCTCTGCGGGCGGGTCGGTGGCTGCGAGCGGG
TCGGTGGCTCCGCGTGAGCCCCTGACACAGCCGCGCGACGGCCCTGCTGGCGACTTGTTGTCGAT
TTTGCACCGCAAGGGCCAGCTGCCCGCGCCGTTTGAGCCGCTGAACGAGTTGGAGGGGTCGATGC
GCGGGTCCCAGCCGGGCCCGAAGAAGGTGACGGTGTTGAAGCGGCTGGAGAACAAGAACGCCAAC
GATTTGTTGTCGTTGTTGAAGCCGAAGAAGGAGGACGAGTCTGGT
Right flanking sequence: Indices 6489 -- 6988
TGCAGCCCAGGGAGGCCCAGCCCAGGGAGGCCCAGCCCAAGGAGTCTCCGTCGCAGGAGCTTTTG
GGGATGTTGAGAGGCAAGCCAGACACTCCTGCTCAGGGCGAGGCGGCTCAACCTCAGGCTCAGGC
TCAGGCCCAGTCTCAGTCTCACCCTGTCCAGTCTCAGTCTCAATTTTCCCAGCCCGAGTCACACC
AGTCACCTACCCAGCCCGCTCAGCCCGCCCAGCCCGCTCAGCCCGCTCCCCAGACTCTGAACCCC
CTCCTTGACATGTTGCATAACCCACGCGAGCAGAAACTGGCGTCCAACGAACTCTTGGGCATGCT
CCACAAGTCCCAGCTGGGCACCCCCGCGTCGGGCTCGCCGGCTCCGAGCAAGAACCCCGCGTCAC
AAGACCTTTTGAACCTTTTGAAGCCCAAGGAAAAGCCCGAACCGCAGCCGCAGCCGCAGGAAACC
CCGGAGTTCGAAGACTTCGAGGACTTCGAGGACTTTGGCGACCTC
Found at i:6502 original size:15 final size:15
Alignment explanation
Indices: 6491--6532 Score: 75
Period size: 15 Copynumber: 2.8 Consensus size: 15
6481 TAAGGAGGTG
6491 CAGCCCAGGGAGGCC
1 CAGCCCAGGGAGGCC
6506 CAGCCCAGGGAGGCC
1 CAGCCCAGGGAGGCC
*
6521 CAGCCCAAGGAG
1 CAGCCCAGGGAG
6533 TCTCCGTCGC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
15 26 1.00
ACGTcount: A:0.24, C:0.38, G:0.38, T:0.00
Consensus pattern (15 bp):
CAGCCCAGGGAGGCC
Left flanking sequence: Indices 5991 -- 6490
AGGAGTTGTTGCTGATCTTAAACTCGCTGGGCACGCCCAAACGGTCGCGCGACGCCACGCCCACC
GCGGGCCGCGACGCCAACCGCCTGAAGGCCGACGAGCTCTTGCTGTTGTTCAAAAAGCCGTCGAA
AAACCCTGTAGAAACGTCGCCCGCGCCGCTGGTGGCGCTGGTGCCGCTGGTGGGAGCCACCGGCT
CTGCGGGCGGGTCGGTGGCTGCGAGCGGGTCGGTGGCTCCGCGTGAGCCCCTGACACAGCCGCGC
GACGGCCCTGCTGGCGACTTGTTGTCGATTTTGCACCGCAAGGGCCAGCTGCCCGCGCCGTTTGA
GCCGCTGAACGAGTTGGAGGGGTCGATGCGCGGGTCCCAGCCGGGCCCGAAGAAGGTGACGGTGT
TGAAGCGGCTGGAGAACAAGAACGCCAACGATTTGTTGTCGTTGTTGAAGCCGAAGAAGGAGGAC
GAGTCTGGTGAGGCCCAGGCTAAGGAGGCCCAGGCTAAGGAGGTG
Right flanking sequence: Indices 6533 -- 7032
TCTCCGTCGCAGGAGCTTTTGGGGATGTTGAGAGGCAAGCCAGACACTCCTGCTCAGGGCGAGGC
GGCTCAACCTCAGGCTCAGGCTCAGGCCCAGTCTCAGTCTCACCCTGTCCAGTCTCAGTCTCAAT
TTTCCCAGCCCGAGTCACACCAGTCACCTACCCAGCCCGCTCAGCCCGCCCAGCCCGCTCAGCCC
GCTCCCCAGACTCTGAACCCCCTCCTTGACATGTTGCATAACCCACGCGAGCAGAAACTGGCGTC
CAACGAACTCTTGGGCATGCTCCACAAGTCCCAGCTGGGCACCCCCGCGTCGGGCTCGCCGGCTC
CGAGCAAGAACCCCGCGTCACAAGACCTTTTGAACCTTTTGAAGCCCAAGGAAAAGCCCGAACCG
CAGCCGCAGCCGCAGGAAACCCCGGAGTTCGAAGACTTCGAGGACTTCGAGGACTTTGGCGACCT
CGACCACCAGTTCTCCCGCACGTTCCACAACTTCGACATCGAGCT
Found at i:6518 original size:30 final size:30
Alignment explanation
Indices: 6455--6532 Score: 84
Period size: 30 Copynumber: 2.6 Consensus size: 30
6445 CGAGTCTGGT
* * * *
6455 GAGGCCCAGGCTAAGGAGGCCCAGGCTAAG
1 GAGGCCCAGCCCAAGGAGGCCCAGCCCAAG
** * *
6485 GAGGTGCAGCCCAGGGAGGCCCAGCCCAGG
1 GAGGCCCAGCCCAAGGAGGCCCAGCCCAAG
6515 GAGGCCCAGCCCAAGGAG
1 GAGGCCCAGCCCAAGGAG
6533 TCTCCGTCGC
Statistics
Matches: 37, Mismatches: 11, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
30 37 1.00
ACGTcount: A:0.24, C:0.31, G:0.41, T:0.04
Consensus pattern (30 bp):
GAGGCCCAGCCCAAGGAGGCCCAGCCCAAG
Left flanking sequence: Indices 5955 -- 6454
AGCTGTTGCAGAAACCGACGATGAAGCCCGAGCTGAAGGAGTTGTTGCTGATCTTAAACTCGCTG
GGCACGCCCAAACGGTCGCGCGACGCCACGCCCACCGCGGGCCGCGACGCCAACCGCCTGAAGGC
CGACGAGCTCTTGCTGTTGTTCAAAAAGCCGTCGAAAAACCCTGTAGAAACGTCGCCCGCGCCGC
TGGTGGCGCTGGTGCCGCTGGTGGGAGCCACCGGCTCTGCGGGCGGGTCGGTGGCTGCGAGCGGG
TCGGTGGCTCCGCGTGAGCCCCTGACACAGCCGCGCGACGGCCCTGCTGGCGACTTGTTGTCGAT
TTTGCACCGCAAGGGCCAGCTGCCCGCGCCGTTTGAGCCGCTGAACGAGTTGGAGGGGTCGATGC
GCGGGTCCCAGCCGGGCCCGAAGAAGGTGACGGTGTTGAAGCGGCTGGAGAACAAGAACGCCAAC
GATTTGTTGTCGTTGTTGAAGCCGAAGAAGGAGGACGAGTCTGGT
Right flanking sequence: Indices 6533 -- 7032
TCTCCGTCGCAGGAGCTTTTGGGGATGTTGAGAGGCAAGCCAGACACTCCTGCTCAGGGCGAGGC
GGCTCAACCTCAGGCTCAGGCTCAGGCCCAGTCTCAGTCTCACCCTGTCCAGTCTCAGTCTCAAT
TTTCCCAGCCCGAGTCACACCAGTCACCTACCCAGCCCGCTCAGCCCGCCCAGCCCGCTCAGCCC
GCTCCCCAGACTCTGAACCCCCTCCTTGACATGTTGCATAACCCACGCGAGCAGAAACTGGCGTC
CAACGAACTCTTGGGCATGCTCCACAAGTCCCAGCTGGGCACCCCCGCGTCGGGCTCGCCGGCTC
CGAGCAAGAACCCCGCGTCACAAGACCTTTTGAACCTTTTGAAGCCCAAGGAAAAGCCCGAACCG
CAGCCGCAGCCGCAGGAAACCCCGGAGTTCGAAGACTTCGAGGACTTCGAGGACTTTGGCGACCT
CGACCACCAGTTCTCCCGCACGTTCCACAACTTCGACATCGAGCT
Found at i:6707 original size:9 final size:9
Alignment explanation
Indices: 6695--6731 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
6685 GTCACCTACC
6695 CAGCCCGCT
1 CAGCCCGCT
*
6704 CAGCCCGCC
1 CAGCCCGCT
6713 CAGCCCGCT
1 CAGCCCGCT
6722 CAGCCCGCT
1 CAGCCCGCT
6731 C
1 C
6732 CCCAGACTCT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.11, C:0.59, G:0.22, T:0.08
Consensus pattern (9 bp):
CAGCCCGCT
Left flanking sequence: Indices 6195 -- 6694
GGTCGGTGGCTGCGAGCGGGTCGGTGGCTCCGCGTGAGCCCCTGACACAGCCGCGCGACGGCCCT
GCTGGCGACTTGTTGTCGATTTTGCACCGCAAGGGCCAGCTGCCCGCGCCGTTTGAGCCGCTGAA
CGAGTTGGAGGGGTCGATGCGCGGGTCCCAGCCGGGCCCGAAGAAGGTGACGGTGTTGAAGCGGC
TGGAGAACAAGAACGCCAACGATTTGTTGTCGTTGTTGAAGCCGAAGAAGGAGGACGAGTCTGGT
GAGGCCCAGGCTAAGGAGGCCCAGGCTAAGGAGGTGCAGCCCAGGGAGGCCCAGCCCAGGGAGGC
CCAGCCCAAGGAGTCTCCGTCGCAGGAGCTTTTGGGGATGTTGAGAGGCAAGCCAGACACTCCTG
CTCAGGGCGAGGCGGCTCAACCTCAGGCTCAGGCTCAGGCCCAGTCTCAGTCTCACCCTGTCCAG
TCTCAGTCTCAATTTTCCCAGCCCGAGTCACACCAGTCACCTACC
Right flanking sequence: Indices 6732 -- 7231
CCCAGACTCTGAACCCCCTCCTTGACATGTTGCATAACCCACGCGAGCAGAAACTGGCGTCCAAC
GAACTCTTGGGCATGCTCCACAAGTCCCAGCTGGGCACCCCCGCGTCGGGCTCGCCGGCTCCGAG
CAAGAACCCCGCGTCACAAGACCTTTTGAACCTTTTGAAGCCCAAGGAAAAGCCCGAACCGCAGC
CGCAGCCGCAGGAAACCCCGGAGTTCGAAGACTTCGAGGACTTCGAGGACTTTGGCGACCTCGAC
CACCAGTTCTCCCGCACGTTCCACAACTTCGACATCGAGCTGGACGAAGAAGACGTAGACCACCT
CTTGGAAAACAACAAACCCATTGACTTTTTCAAGCAGCAAGCCAGCCCGGACAAGATCCAGATCG
CTAAGCCCGGGAGCTTGGCGAGCCCGCAGCCGCACTACCAGCCGCAGTTCCCCCAGCAGGTGTAC
GAGCCGCAGCAGGGCACCCCGCAGGCGGCCGGCCAGAGCCTCTTG
Found at i:6716 original size:18 final size:18
Alignment explanation
Indices: 6693--6729 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
6683 CAGTCACCTA
6693 CCCAGCCCGCTCAGCCCG
1 CCCAGCCCGCTCAGCCCG
6711 CCCAGCCCGCTCAGCCCG
1 CCCAGCCCGCTCAGCCCG
6729 C
1 C
6730 TCCCCAGACT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.11, C:0.62, G:0.22, T:0.05
Consensus pattern (18 bp):
CCCAGCCCGCTCAGCCCG
Left flanking sequence: Indices 6193 -- 6692
CGGGTCGGTGGCTGCGAGCGGGTCGGTGGCTCCGCGTGAGCCCCTGACACAGCCGCGCGACGGCC
CTGCTGGCGACTTGTTGTCGATTTTGCACCGCAAGGGCCAGCTGCCCGCGCCGTTTGAGCCGCTG
AACGAGTTGGAGGGGTCGATGCGCGGGTCCCAGCCGGGCCCGAAGAAGGTGACGGTGTTGAAGCG
GCTGGAGAACAAGAACGCCAACGATTTGTTGTCGTTGTTGAAGCCGAAGAAGGAGGACGAGTCTG
GTGAGGCCCAGGCTAAGGAGGCCCAGGCTAAGGAGGTGCAGCCCAGGGAGGCCCAGCCCAGGGAG
GCCCAGCCCAAGGAGTCTCCGTCGCAGGAGCTTTTGGGGATGTTGAGAGGCAAGCCAGACACTCC
TGCTCAGGGCGAGGCGGCTCAACCTCAGGCTCAGGCTCAGGCCCAGTCTCAGTCTCACCCTGTCC
AGTCTCAGTCTCAATTTTCCCAGCCCGAGTCACACCAGTCACCTA
Right flanking sequence: Indices 6730 -- 7229
TCCCCAGACTCTGAACCCCCTCCTTGACATGTTGCATAACCCACGCGAGCAGAAACTGGCGTCCA
ACGAACTCTTGGGCATGCTCCACAAGTCCCAGCTGGGCACCCCCGCGTCGGGCTCGCCGGCTCCG
AGCAAGAACCCCGCGTCACAAGACCTTTTGAACCTTTTGAAGCCCAAGGAAAAGCCCGAACCGCA
GCCGCAGCCGCAGGAAACCCCGGAGTTCGAAGACTTCGAGGACTTCGAGGACTTTGGCGACCTCG
ACCACCAGTTCTCCCGCACGTTCCACAACTTCGACATCGAGCTGGACGAAGAAGACGTAGACCAC
CTCTTGGAAAACAACAAACCCATTGACTTTTTCAAGCAGCAAGCCAGCCCGGACAAGATCCAGAT
CGCTAAGCCCGGGAGCTTGGCGAGCCCGCAGCCGCACTACCAGCCGCAGTTCCCCCAGCAGGTGT
ACGAGCCGCAGCAGGGCACCCCGCAGGCGGCCGGCCAGAGCCTCT
Found at i:11011 original size:20 final size:21
Alignment explanation
Indices: 10981--11049 Score: 124
Period size: 20 Copynumber: 3.4 Consensus size: 21
10971 TACCTTTCCA
10981 ACTTCAATCCTCTCATTCTCT
1 ACTTCAATCCTCTCATTCTCT
11002 ACTT-AATCCTCTCATTCTCT
1 ACTTCAATCCTCTCATTCTCT
11022 ACTTCAATCCT-TCATTCTCT
1 ACTTCAATCCTCTCATTCTCT
11042 ACTTCAAT
1 ACTTCAAT
11050 ACCTTGCCGT
Statistics
Matches: 47, Mismatches: 0, Indels: 3
0.94 0.00 0.06
Matches are distributed among these distances:
20 37 0.79
21 10 0.21
ACGTcount: A:0.22, C:0.35, G:0.00, T:0.43
Consensus pattern (21 bp):
ACTTCAATCCTCTCATTCTCT
Left flanking sequence: Indices 10481 -- 10980
ACGTAGGGGTTAACGAAAGGTGGTCCCTGATCATACGGAAACTGTCGCGTGCTGCAACTAGCAAT
TGATGACGAGGGCCACTGGGGGCTCGCTTAAGCATACGCAATTGGGTTTTTGGTGGTATGGTACG
ATACCAAGCCAAATCCGCGGGTGTCAACACACTACGGGAGGGTAGCAGGGGGTGGTTAGGGACTA
TGGGGTGATGAAGCATTGTGGGGTGGTCCGAGAAAACAAAGTAACCAAGGAGTACACTCTAACAA
ACCCACTCATCCCCTTTAGTGTTTCTTTTAGACCACCATTAAATCTCCCTTCAACTAAGGACCAC
TCTCAAATCTACAGGATAGACACCCAGGGGCGTAAAACTACGGTACTTCATACACCGAGGAACGC
TTGGACACTACGATGCACCCACGCACAAATCACCCATACACCACCTTCACGCTTTCACTCCGTAA
ACTTCCTAAAAGCAGCACATTGAGCTCACCAACTATACCTTTCCA
Right flanking sequence: Indices 11050 -- 11549
ACCTTGCCGTCGGCAATCTCAACCGACTTCCCGTCAACCACCACCGGCTTGTCCCACGCCATCAT
GTTCTCAAAGAAGTCCTTGTCCTCCTCCTTCGAGGGGTCCAAAGGCTTGTAGTCGTACGACTCCC
AGTCGGGAGCAACGTCAAACGCAGGCGCAAACTCCTTGCCACGCACAATGAACGCACCCACAATC
CCGTTGTTGTTGTTCTCCCCGTAAACAACCATGCACCCAAACATGTACTTGGTGGACGCGGACAA
CCGGTTGAAGAACCCACCAACCAAGTTGTTGGACATGAAGGTGAGCGTCAACTCGTCGTTGTACT
TGTAGTCCACACGCCACATCGACCACTCGTCCGGGTTCCAGAAGTTCTTCCAGAACCAGGGGAGC
GCCACCTCGCGCGTCTCCTCGTTGGAGTAGAATCTCTTCCACTCGTCAATGGGGGTGGAAGGCTT
GCCGAGCGCCTCAAGCGGGTGCTTGGGCTTGGGAGCCTGCTGGGG
Found at i:12487 original size:9 final size:9
Alignment explanation
Indices: 12473--12507 Score: 63
Period size: 9 Copynumber: 4.0 Consensus size: 9
12463 TATTGTGTTT
12473 GTTTCGTGG
1 GTTTCGTGG
12482 GTTTCGTGG
1 GTTTCGTGG
12491 GTTTCGTGG
1 GTTTCGTGG
12500 GTTT-GTGG
1 GTTTCGTGG
12508 TGTTCGCTTA
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
8 4 0.15
9 22 0.85
ACGTcount: A:0.00, C:0.09, G:0.46, T:0.46
Consensus pattern (9 bp):
GTTTCGTGG
Left flanking sequence: Indices 11973 -- 12472
CCCGTCTCCAGTCAACGGCTTGAACGCATGGGCAGCACAGAGGAGCACCTCCGAGTTGACCAACG
ACATCCACATATCAATCAAGGCGAACTCCAAAGTGTTTTTCCCAAGCAACTTGGAGTCCGGGTCC
GCCAACCGGATGAAGTAGAACACAAGAGCCGTGGTCTCGTGCATCTTGACTCCCTTGTTGGTGAT
GAAAACGGGCACTTTCTCACGAGGGAACGCCTTTTTGAACTCAGGGTGACCCTCATACGAGTCGT
ACACGGTGAGGTCAATCTTGTAGTGGTCGATAAACGCCTTGACCGCCAACGGGCGGGTTCTGGGG
CCTAAGATGATGGTGCCTTGGGACATGATTGGAGAATTACGCACCCCGCAATTTTTCAGAAATGG
TTGCTGTGGACGACAGAAGCGGGTGGGTGTAGGAATAGGGGAGTGTTGAGTGGTGTTGTCGGGTG
ATGGAAGTGTAGTATGTGTCTAGGTAGAGGTATCGTATTGTGTTT
Right flanking sequence: Indices 12508 -- 13007
TGTTCGCTTAACTCCGAACCACCCACGAGGTGGTTGACGAAGGGAGTAAATAATGGGGTGAAGAG
GTAGGGAGCGATTCGGAGGAGAATTAACGGTTGAGGGTGCTGGATAACGCGCAATTGACTTTTCA
GCTCCCGTGGTGTCTGCGCTGTGGAGCCCTCTACATTCTTTTATAGAAGCTCGTTACTGGAACGT
GTGAATTACTGTAGGTGAAGTTGCTTCACGGGTATAGCCCTTGAAAATACCTCCACAACTACACT
AATGATACTCTCCACTATTCGAGTTCAGACGTGTGGCAATTGCAATTTGTTGCCGTGATCAGTAA
GGCACTTTAAATGGGGCTCAAAAGAATGACGGTCAATCATAAGAGACGTCGCATGATTCGCATAC
CCACCCATCAAAACTACTCAGGCTCAGTTGTTATCAATCACCCTCCAAACCGATGACACTCTTGC
CAATTCCCTTTCTGTATTGATCATTTCACGTTACATCACCCAACT
Found at i:18903 original size:9 final size:9
Alignment explanation
Indices: 18889--18921 Score: 57
Period size: 9 Copynumber: 3.7 Consensus size: 9
18879 GGCGAACCTG
18889 TATATATCC
1 TATATATCC
18898 TATATATCC
1 TATATATCC
*
18907 TATACATCC
1 TATATATCC
18916 TATATA
1 TATATA
18922 CTACAATATA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
9 22 1.00
ACGTcount: A:0.36, C:0.21, G:0.00, T:0.42
Consensus pattern (9 bp):
TATATATCC
Left flanking sequence: Indices 18389 -- 18888
CTCGCTCAATTCGCCACCTATCGACCTGGTAGTACCTAAGAGACGTAAATTAGTGCTGTCTGTAT
CCATGTCAGTACTCAATGGCTTGTTTGGACCATTATTTGAGGAGTTATTCTAGTTCATAATTCTT
ACCAAAAACCCATTAAACGACGAGCTATACGACATCAATTCAAAAATTCATGAAGACTTTACGAA
CATCACTTTACGAGCTTACATTATAGTGTGACTCTGATCACGTGATTGTGTAAACCGGCCCCCTC
TAACAAAGGCGTCTGCATGTAAAAACGGCCCCCTCTAACAAACAACCACCCCCACTATACGACGA
GCTATACGACGACCATTCAACATTTACTAAAGACTTTACGAGAATTACATAACACGTTATGTTAG
CCGCTATACGAGCTGACCTAATATACTGGTGCGGCTCAGTGATGGCAGATGATATACGTCACGTG
ACTTTACTGTTGATACCGTAGATAGCGTTGATTTTGGCGAACCTG
Right flanking sequence: Indices 18922 -- 19421
CTACAATATAAGCCCCCAGTACGGCTTCAGGGTAGCCCGCTCATGCAGGCTACTCCGAAGGCGCA
CCCAGTGCTTAACTATACAATTATAGAAACCCGGATTGGATACCAATGGCACCACCAACAGGGGG
AAAAAACGGTGCCAATGGCACCCGATCCAACGAATCGAATCGGATACCATTGGCACCACCAACAG
GGGGAAAAGGAGCCATTGGCATCCAACCCTTAAACAACCTCCAGCAACAATAACAACAACAACAA
CAACAACAACAACACCAACACCAACACACCAACACCAACACACCAACACCAACACCAACACACCA
ACACCAACACACCAACACCAACACCAACACACCAACACACCAACACCAACACACCGATAACAACA
CACCAACTCCAACACTCCAACACCAACACACCAATAAGAGGGGGTGGTATCCGCTAGTACTTCTG
ATATTGTCTCCCATATGGCAAAGGAAGCGAAGCCCAGAGGCTTGC
Found at i:19175 original size:9 final size:9
Alignment explanation
Indices: 19161--19297 Score: 88
Period size: 9 Copynumber: 15.9 Consensus size: 9
19151 CAACCTCCAG
*
19161 CAACAATAA
1 CAACAACAA
19170 CAACAACAA
1 CAACAACAA
19179 CAACAACAA
1 CAACAACAA
*
19188 CAACAACAC
1 CAACAACAA
*
19197 CAACACCAA
1 CAACAACAA
*
19206 C-ACACCAA
1 CAACAACAA
*
19214 CACCAAC-A
1 CAACAACAA
* *
19222 CACCAACAC
1 CAACAACAA
*
19231 CAACACCAA
1 CAACAACAA
*
19240 C-ACACCAA
1 CAACAACAA
*
19248 CACCAAC-A
1 CAACAACAA
* *
19256 CACCAACAC
1 CAACAACAA
*
19265 CAACACCAA
1 CAACAACAA
*
19274 C-ACACCAA
1 CAACAACAA
*
19282 C-ACACCAA
1 CAACAACAA
*
19290 CACCAACA
1 CAACAACA
19298 CACCGATAAC
Statistics
Matches: 105, Mismatches: 18, Indels: 10
0.79 0.14 0.08
Matches are distributed among these distances:
8 48 0.46
9 57 0.54
ACGTcount: A:0.54, C:0.45, G:0.00, T:0.01
Consensus pattern (9 bp):
CAACAACAA
Left flanking sequence: Indices 18661 -- 19160
CTGCATGTAAAAACGGCCCCCTCTAACAAACAACCACCCCCACTATACGACGAGCTATACGACGA
CCATTCAACATTTACTAAAGACTTTACGAGAATTACATAACACGTTATGTTAGCCGCTATACGAG
CTGACCTAATATACTGGTGCGGCTCAGTGATGGCAGATGATATACGTCACGTGACTTTACTGTTG
ATACCGTAGATAGCGTTGATTTTGGCGAACCTGTATATATCCTATATATCCTATACATCCTATAT
ACTACAATATAAGCCCCCAGTACGGCTTCAGGGTAGCCCGCTCATGCAGGCTACTCCGAAGGCGC
ACCCAGTGCTTAACTATACAATTATAGAAACCCGGATTGGATACCAATGGCACCACCAACAGGGG
GAAAAAACGGTGCCAATGGCACCCGATCCAACGAATCGAATCGGATACCATTGGCACCACCAACA
GGGGGAAAAGGAGCCATTGGCATCCAACCCTTAAACAACCTCCAG
Right flanking sequence: Indices 19298 -- 19480
CACCGATAACAACACACCAACTCCAACACTCCAACACCAACACACCAATAAGAGGGGGTGGTATC
CGCTAGTACTTCTGATATTGTCTCCCATATGGCAAAGGAAGCGAAGCCCAGAGGCTTGCAACTCC
CCGCGCCGACCACGGGATGGTTCTGTGGCGATACCGCCCATCCTGACGCTAGA
Found at i:19212 original size:14 final size:14
Alignment explanation
Indices: 19168--19345 Score: 187
Period size: 14 Copynumber: 12.1 Consensus size: 14
19158 CAGCAACAAT
* *
19168 AACAACAACAACAAC
1 AACACCAAC-ACACC
*
19183 AACAACAACAACACC
1 AACACCAAC-ACACC
19198 AACACCAACACACC
1 AACACCAACACACC
19212 AACACCAACACACCAACACC
1 AACA-C--CA-A-C-ACACC
19232 AACACCAACACACC
1 AACACCAACACACC
19246 AACACCAACACACC
1 AACACCAACACACC
*
19260 AACACCAACAC-CA
1 AACACCAACACACC
19273 ACACACCAACACACC
1 A-ACACCAACACACC
19288 AACACCAACACACC
1 AACACCAACACACC
* * *
19302 GATAACAACACACC
1 AACACCAACACACC
* *
19316 AACTCCAACACTCC
1 AACACCAACACACC
19330 AACACCAACACACC
1 AACACCAACACACC
19344 AA
1 AA
19346 TAAGAGGGGG
Statistics
Matches: 141, Mismatches: 14, Indels: 17
0.82 0.08 0.10
Matches are distributed among these distances:
13 2 0.01
14 96 0.68
15 26 0.18
16 1 0.01
17 4 0.03
18 1 0.01
19 2 0.01
20 9 0.06
ACGTcount: A:0.52, C:0.46, G:0.01, T:0.02
Consensus pattern (14 bp):
AACACCAACACACC
Left flanking sequence: Indices 18668 -- 19167
TAAAAACGGCCCCCTCTAACAAACAACCACCCCCACTATACGACGAGCTATACGACGACCATTCA
ACATTTACTAAAGACTTTACGAGAATTACATAACACGTTATGTTAGCCGCTATACGAGCTGACCT
AATATACTGGTGCGGCTCAGTGATGGCAGATGATATACGTCACGTGACTTTACTGTTGATACCGT
AGATAGCGTTGATTTTGGCGAACCTGTATATATCCTATATATCCTATACATCCTATATACTACAA
TATAAGCCCCCAGTACGGCTTCAGGGTAGCCCGCTCATGCAGGCTACTCCGAAGGCGCACCCAGT
GCTTAACTATACAATTATAGAAACCCGGATTGGATACCAATGGCACCACCAACAGGGGGAAAAAA
CGGTGCCAATGGCACCCGATCCAACGAATCGAATCGGATACCATTGGCACCACCAACAGGGGGAA
AAGGAGCCATTGGCATCCAACCCTTAAACAACCTCCAGCAACAAT
Right flanking sequence: Indices 19346 -- 19480
TAAGAGGGGGTGGTATCCGCTAGTACTTCTGATATTGTCTCCCATATGGCAAAGGAAGCGAAGCC
CAGAGGCTTGCAACTCCCCGCGCCGACCACGGGATGGTTCTGTGGCGATACCGCCCATCCTGACG
CTAGA
Found at i:19298 original size:6 final size:6
Alignment explanation
Indices: 19168--19298 Score: 122
Period size: 6 Copynumber: 20.8 Consensus size: 6
19158 CAGCAACAAT
* * * *
19168 AACAAC AACAAC AACAAC AACAAC AACACC AACACC AACACACC AACACC
1 AACACC AACACC AACACC AACACC AACACC AACACC -A-ACACC AACACC
19218 AACACACC AACACC AACACC AACACACC AACACC AACACACC AACACC
1 -A-ACACC AACACC AACACC -A-ACACC AACACC -A-ACACC AACACC
* *
19266 AACACC AACA-C ACCAAC -ACACC AACACC AACAC
1 AACACC AACACC AACACC AACACC AACACC AACAC
19299 ACCGATAACA
Statistics
Matches: 111, Mismatches: 4, Indels: 20
0.82 0.03 0.15
Matches are distributed among these distances:
5 7 0.06
6 76 0.68
7 8 0.07
8 20 0.18
ACGTcount: A:0.53, C:0.47, G:0.00, T:0.00
Consensus pattern (6 bp):
AACACC
Left flanking sequence: Indices 18668 -- 19167
TAAAAACGGCCCCCTCTAACAAACAACCACCCCCACTATACGACGAGCTATACGACGACCATTCA
ACATTTACTAAAGACTTTACGAGAATTACATAACACGTTATGTTAGCCGCTATACGAGCTGACCT
AATATACTGGTGCGGCTCAGTGATGGCAGATGATATACGTCACGTGACTTTACTGTTGATACCGT
AGATAGCGTTGATTTTGGCGAACCTGTATATATCCTATATATCCTATACATCCTATATACTACAA
TATAAGCCCCCAGTACGGCTTCAGGGTAGCCCGCTCATGCAGGCTACTCCGAAGGCGCACCCAGT
GCTTAACTATACAATTATAGAAACCCGGATTGGATACCAATGGCACCACCAACAGGGGGAAAAAA
CGGTGCCAATGGCACCCGATCCAACGAATCGAATCGGATACCATTGGCACCACCAACAGGGGGAA
AAGGAGCCATTGGCATCCAACCCTTAAACAACCTCCAGCAACAAT
Right flanking sequence: Indices 19299 -- 19480
ACCGATAACAACACACCAACTCCAACACTCCAACACCAACACACCAATAAGAGGGGGTGGTATCC
GCTAGTACTTCTGATATTGTCTCCCATATGGCAAAGGAAGCGAAGCCCAGAGGCTTGCAACTCCC
CGCGCCGACCACGGGATGGTTCTGTGGCGATACCGCCCATCCTGACGCTAGA
Done.