Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: scaffold29
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 64230
ACGTcount: A:0.23, C:0.28, G:0.27, T:0.22
Warning! 1 characters in sequence are not A, C, G, or T
Found at i:561 original size:51 final size:50
Alignment explanation
Indices: 506--607 Score: 195
Period size: 51 Copynumber: 2.0 Consensus size: 50
496 ACATCGACTT
506 GGACGCCGAGCTGCCCCCGCCCACCCAGCGGGCGTCGCCCAAGAAACGCG
1 GGACGCCGAGCTGCCCCCGCCCACCCAGCGGGCGTCGCCCAAGAAACGCG
556 NGGACGCCGAGCTGCCCCCGCCCACCCAGCGGGCGTCGCCCAAGAAACGCG
1 -GGACGCCGAGCTGCCCCCGCCCACCCAGCGGGCGTCGCCCAAGAAACGCG
607 G
1 G
608 CGGCCGCCGC
Statistics
Matches: 51, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
50 1 0.02
51 50 0.98
ACGTcount: A:0.18, C:0.45, G:0.32, T:0.04
Consensus pattern (50 bp):
GGACGCCGAGCTGCCCCCGCCCACCCAGCGGGCGTCGCCCAAGAAACGCG
Left flanking sequence: Indices 6 -- 505
ACCCCCCCACAACACCCCGACCCCCGGCCCCCCGACCCACTACCACCCCACCCCCGACCCATAGC
CCCGTGTTTTAACCCCATTAGAACCCCGCCGCCGCCGCCGTCTGCCTCAACCGGACCCGCGACGC
GTCATTTTCAGTTCTTTTTTCAGGGAGTGTGTGGCCAAAACTGAAAGCACCTCATGGCCGAAGTC
GACAACCGCAGACAACGCCGGCCCCGAAGACAACGCTCGAGAATGGCGCTCAACCAACGCGACGC
GGCGCCGGGCGCGCCCCGCGAGCCGGCGCTTGCCCCCGCGCCCCCGGCGGCCCCGCCCCTGGCCG
CGGCCCCGGCGCGGTTTGAGCTGGACTTGGACTACCTCCTCGGCACCTCGCACGAGTGCAGTGTG
CCCGCACCTCTGGCGCCAGAGGTGCCGCCGGCGGCGCGCCGGGTGCGCAAGACGAAGCTGCTCCG
GTTCCTGCCGCTGGAGATCGCCCAGGACATCGACGACATCGACTT
Right flanking sequence: Indices 608 -- 1107
CGGCCGCCGCAAGAAGCTGATGGAGGTGATGGCGGCGTTTGCCGCCAACGACTTGCTGAAGGACG
ACTCGTTGGCCGACATGTCGTTTATCAGCGACGACGAGCACCTGACGCTGATGGAGGTGTCGTTC
CACGACGACGCGGGCGAGGCCACCGGCCAGGCTACCAACGGCCAGGCTACCAACGGCGCCCCGAC
CAACGGCTCCGCCTCCTCGCACACCTCGCACACCTCCGACCCCGGTGCCTCCAGCGCCGGTGCCC
CCAGCGCTGACCCCAGTGCCCCCAACGCCGACACCGGTAGTGCACCTGGTGCCGGCGATTCCTCC
TCCTCCTCCGGCGCCAACCCCGACCTGGGCGCCAACCCCGACCAGGGCTCCCACTCCGCCGGCGC
CCCCACCCTGGGCCCCAACACCGACCAGGGCGCCAACCAGAGCACCACCCAGGGCACCCCGGGCA
CCAACCAGGGCACCAACCCCACCCCAGAGTCCCGGCTCTCCAAAA
Found at i:781 original size:15 final size:15
Alignment explanation
Indices: 761--794 Score: 68
Period size: 15 Copynumber: 2.3 Consensus size: 15
751 GCGAGGCCAC
761 CGGCCAGGCTACCAA
1 CGGCCAGGCTACCAA
776 CGGCCAGGCTACCAA
1 CGGCCAGGCTACCAA
791 CGGC
1 CGGC
795 GCCCCGACCA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.24, C:0.41, G:0.29, T:0.06
Consensus pattern (15 bp):
CGGCCAGGCTACCAA
Left flanking sequence: Indices 261 -- 760
GACGCGGCGCCGGGCGCGCCCCGCGAGCCGGCGCTTGCCCCCGCGCCCCCGGCGGCCCCGCCCCT
GGCCGCGGCCCCGGCGCGGTTTGAGCTGGACTTGGACTACCTCCTCGGCACCTCGCACGAGTGCA
GTGTGCCCGCACCTCTGGCGCCAGAGGTGCCGCCGGCGGCGCGCCGGGTGCGCAAGACGAAGCTG
CTCCGGTTCCTGCCGCTGGAGATCGCCCAGGACATCGACGACATCGACTTGGACGCCGAGCTGCC
CCCGCCCACCCAGCGGGCGTCGCCCAAGAAACGCGNGGACGCCGAGCTGCCCCCGCCCACCCAGC
GGGCGTCGCCCAAGAAACGCGGCGGCCGCCGCAAGAAGCTGATGGAGGTGATGGCGGCGTTTGCC
GCCAACGACTTGCTGAAGGACGACTCGTTGGCCGACATGTCGTTTATCAGCGACGACGAGCACCT
GACGCTGATGGAGGTGTCGTTCCACGACGACGCGGGCGAGGCCAC
Right flanking sequence: Indices 795 -- 1294
GCCCCGACCAACGGCTCCGCCTCCTCGCACACCTCGCACACCTCCGACCCCGGTGCCTCCAGCGC
CGGTGCCCCCAGCGCTGACCCCAGTGCCCCCAACGCCGACACCGGTAGTGCACCTGGTGCCGGCG
ATTCCTCCTCCTCCTCCGGCGCCAACCCCGACCTGGGCGCCAACCCCGACCAGGGCTCCCACTCC
GCCGGCGCCCCCACCCTGGGCCCCAACACCGACCAGGGCGCCAACCAGAGCACCACCCAGGGCAC
CCCGGGCACCAACCAGGGCACCAACCCCACCCCAGAGTCCCGGCTCTCCAAAAAGAAGAGCCGGA
GCCAGTTGCGCAAGAAGCGCCTGCGGGCCAAGTTGCGCGAGGCCAAGGAGGCTGCCGCCGCCGCC
GCGGCCGAAGAAGAGCCCAAGGGCCTCGGGCTCACCCTGGTCAGCGCCGAGGCGCTCCCCCCGAC
CCCGTCGATCGCCGAGTTGGCGCGCAAGCCCCTGGTGGCGGCGTT
Found at i:862 original size:15 final size:15
Alignment explanation
Indices: 844--874 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
834 ACCTCCGACC
*
844 CCGGTGCCTCCAGCG
1 CCGGTGCCCCCAGCG
859 CCGGTGCCCCCAGCG
1 CCGGTGCCCCCAGCG
874 C
1 C
875 TGACCCCAGT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.06, C:0.52, G:0.32, T:0.10
Consensus pattern (15 bp):
CCGGTGCCCCCAGCG
Left flanking sequence: Indices 344 -- 843
GTTTGAGCTGGACTTGGACTACCTCCTCGGCACCTCGCACGAGTGCAGTGTGCCCGCACCTCTGG
CGCCAGAGGTGCCGCCGGCGGCGCGCCGGGTGCGCAAGACGAAGCTGCTCCGGTTCCTGCCGCTG
GAGATCGCCCAGGACATCGACGACATCGACTTGGACGCCGAGCTGCCCCCGCCCACCCAGCGGGC
GTCGCCCAAGAAACGCGNGGACGCCGAGCTGCCCCCGCCCACCCAGCGGGCGTCGCCCAAGAAAC
GCGGCGGCCGCCGCAAGAAGCTGATGGAGGTGATGGCGGCGTTTGCCGCCAACGACTTGCTGAAG
GACGACTCGTTGGCCGACATGTCGTTTATCAGCGACGACGAGCACCTGACGCTGATGGAGGTGTC
GTTCCACGACGACGCGGGCGAGGCCACCGGCCAGGCTACCAACGGCCAGGCTACCAACGGCGCCC
CGACCAACGGCTCCGCCTCCTCGCACACCTCGCACACCTCCGACC
Right flanking sequence: Indices 875 -- 1374
TGACCCCAGTGCCCCCAACGCCGACACCGGTAGTGCACCTGGTGCCGGCGATTCCTCCTCCTCCT
CCGGCGCCAACCCCGACCTGGGCGCCAACCCCGACCAGGGCTCCCACTCCGCCGGCGCCCCCACC
CTGGGCCCCAACACCGACCAGGGCGCCAACCAGAGCACCACCCAGGGCACCCCGGGCACCAACCA
GGGCACCAACCCCACCCCAGAGTCCCGGCTCTCCAAAAAGAAGAGCCGGAGCCAGTTGCGCAAGA
AGCGCCTGCGGGCCAAGTTGCGCGAGGCCAAGGAGGCTGCCGCCGCCGCCGCGGCCGAAGAAGAG
CCCAAGGGCCTCGGGCTCACCCTGGTCAGCGCCGAGGCGCTCCCCCCGACCCCGTCGATCGCCGA
GTTGGCGCGCAAGCCCCTGGTGGCGGCGTTGATCGCCGGGATCGAGCGCGGGGAGCAGGAGCTGC
CGTTTGCGGTGCAGTTGCGCCCGTTGAACATCAACAACACCAAGA
Found at i:965 original size:18 final size:18
Alignment explanation
Indices: 942--980 Score: 69
Period size: 18 Copynumber: 2.2 Consensus size: 18
932 CTCCTCCTCC
*
942 GGCGCCAACCCCGACCTG
1 GGCGCCAACCCCGACCAG
960 GGCGCCAACCCCGACCAG
1 GGCGCCAACCCCGACCAG
978 GGC
1 GGC
981 TCCCACTCCG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.18, C:0.49, G:0.31, T:0.03
Consensus pattern (18 bp):
GGCGCCAACCCCGACCAG
Left flanking sequence: Indices 442 -- 941
GCAAGACGAAGCTGCTCCGGTTCCTGCCGCTGGAGATCGCCCAGGACATCGACGACATCGACTTG
GACGCCGAGCTGCCCCCGCCCACCCAGCGGGCGTCGCCCAAGAAACGCGNGGACGCCGAGCTGCC
CCCGCCCACCCAGCGGGCGTCGCCCAAGAAACGCGGCGGCCGCCGCAAGAAGCTGATGGAGGTGA
TGGCGGCGTTTGCCGCCAACGACTTGCTGAAGGACGACTCGTTGGCCGACATGTCGTTTATCAGC
GACGACGAGCACCTGACGCTGATGGAGGTGTCGTTCCACGACGACGCGGGCGAGGCCACCGGCCA
GGCTACCAACGGCCAGGCTACCAACGGCGCCCCGACCAACGGCTCCGCCTCCTCGCACACCTCGC
ACACCTCCGACCCCGGTGCCTCCAGCGCCGGTGCCCCCAGCGCTGACCCCAGTGCCCCCAACGCC
GACACCGGTAGTGCACCTGGTGCCGGCGATTCCTCCTCCTCCTCC
Right flanking sequence: Indices 981 -- 1480
TCCCACTCCGCCGGCGCCCCCACCCTGGGCCCCAACACCGACCAGGGCGCCAACCAGAGCACCAC
CCAGGGCACCCCGGGCACCAACCAGGGCACCAACCCCACCCCAGAGTCCCGGCTCTCCAAAAAGA
AGAGCCGGAGCCAGTTGCGCAAGAAGCGCCTGCGGGCCAAGTTGCGCGAGGCCAAGGAGGCTGCC
GCCGCCGCCGCGGCCGAAGAAGAGCCCAAGGGCCTCGGGCTCACCCTGGTCAGCGCCGAGGCGCT
CCCCCCGACCCCGTCGATCGCCGAGTTGGCGCGCAAGCCCCTGGTGGCGGCGTTGATCGCCGGGA
TCGAGCGCGGGGAGCAGGAGCTGCCGTTTGCGGTGCAGTTGCGCCCGTTGAACATCAACAACACC
AAGAAGCTGGAGAAGTTGCCCGAGGTGCAGCCGCTCAAGCTGATCATCGGGTTGCTGCTGCTCCA
CATCCTCAAGTTGAACCTGAACGACGTCAAGATGAAGACGCTCAA
Found at i:1073 original size:12 final size:12
Alignment explanation
Indices: 1016--1080 Score: 73
Period size: 12 Copynumber: 5.7 Consensus size: 12
1006 TGGGCCCCAA
*
1016 CACCGACCAGGG
1 CACCAACCAGGG
* *
1028 CGCCAACCAGAG
1 CACCAACCAGGG
*
1040 CACCACCCAGGG
1 CACCAACCAGGG
1052 CACC--CC-GGG
1 CACCAACCAGGG
1061 CACCAACCAGGG
1 CACCAACCAGGG
1073 CACCAACC
1 CACCAACC
1081 CCACCCCAGA
Statistics
Matches: 44, Mismatches: 6, Indels: 6
0.79 0.11 0.11
Matches are distributed among these distances:
9 7 0.16
10 2 0.05
11 2 0.05
12 33 0.75
ACGTcount: A:0.28, C:0.48, G:0.25, T:0.00
Consensus pattern (12 bp):
CACCAACCAGGG
Left flanking sequence: Indices 516 -- 1015
CTGCCCCCGCCCACCCAGCGGGCGTCGCCCAAGAAACGCGNGGACGCCGAGCTGCCCCCGCCCAC
CCAGCGGGCGTCGCCCAAGAAACGCGGCGGCCGCCGCAAGAAGCTGATGGAGGTGATGGCGGCGT
TTGCCGCCAACGACTTGCTGAAGGACGACTCGTTGGCCGACATGTCGTTTATCAGCGACGACGAG
CACCTGACGCTGATGGAGGTGTCGTTCCACGACGACGCGGGCGAGGCCACCGGCCAGGCTACCAA
CGGCCAGGCTACCAACGGCGCCCCGACCAACGGCTCCGCCTCCTCGCACACCTCGCACACCTCCG
ACCCCGGTGCCTCCAGCGCCGGTGCCCCCAGCGCTGACCCCAGTGCCCCCAACGCCGACACCGGT
AGTGCACCTGGTGCCGGCGATTCCTCCTCCTCCTCCGGCGCCAACCCCGACCTGGGCGCCAACCC
CGACCAGGGCTCCCACTCCGCCGGCGCCCCCACCCTGGGCCCCAA
Right flanking sequence: Indices 1081 -- 1580
CCACCCCAGAGTCCCGGCTCTCCAAAAAGAAGAGCCGGAGCCAGTTGCGCAAGAAGCGCCTGCGG
GCCAAGTTGCGCGAGGCCAAGGAGGCTGCCGCCGCCGCCGCGGCCGAAGAAGAGCCCAAGGGCCT
CGGGCTCACCCTGGTCAGCGCCGAGGCGCTCCCCCCGACCCCGTCGATCGCCGAGTTGGCGCGCA
AGCCCCTGGTGGCGGCGTTGATCGCCGGGATCGAGCGCGGGGAGCAGGAGCTGCCGTTTGCGGTG
CAGTTGCGCCCGTTGAACATCAACAACACCAAGAAGCTGGAGAAGTTGCCCGAGGTGCAGCCGCT
CAAGCTGATCATCGGGTTGCTGCTGCTCCACATCCTCAAGTTGAACCTGAACGACGTCAAGATGA
AGACGCTCAAGCAGCTGCTGACGCTCCTGAAGTACGCGGCCACCGGGCTCTCGTTCACCAACACC
CACTCCGACGAGCTCTTTGCCAACCCCGACAAACAGCGGGTGTTC
Found at i:2066 original size:10 final size:10
Alignment explanation
Indices: 2051--2107 Score: 77
Period size: 10 Copynumber: 6.1 Consensus size: 10
2041 AATAGTGGGG
*
2051 ATTTGCAGCC
1 ATTTGCAACC
2061 ATTTGCAACC
1 ATTTGCAACC
2071 A--TGCAACC
1 ATTTGCAACC
2079 A--TGCAACC
1 ATTTGCAACC
2087 ATTTGCAACC
1 ATTTGCAACC
2097 ATTTGCAACC
1 ATTTGCAACC
2107 A
1 A
2108 CTCGTATATT
Statistics
Matches: 44, Mismatches: 1, Indels: 4
0.90 0.02 0.08
Matches are distributed among these distances:
8 16 0.36
10 28 0.64
ACGTcount: A:0.32, C:0.32, G:0.12, T:0.25
Consensus pattern (10 bp):
ATTTGCAACC
Left flanking sequence: Indices 1551 -- 2050
TTTGCCAACCCCGACAAACAGCGGGTGTTCTTTTTGTTGTGCATCAACGTGGCGCTCTTTGAGGC
GGTGGGGTTCAAAAAGACGCTCCAGGCGCACCCCGACATCTTGGAGTTGTTTGGCGGGTACCCCG
AGATCAACTTGGAGACCACCCGCACCAAGTTGACCCCGCTGAACAAGCAGGTGCACCAGAACAAC
TTGGACTACCTGGTGCTTTCCTATTTGGGCAACATTTTGATCTGGGCCGCCAACATGCAGCGCGA
GGCGGGCAAGCCGTTGTTGTACCAGCACTACGACCTTGGGTTTGACTGCCAGGTGGTGCGGGACA
ACGTGGGCGGGTGGCATTTGTGGGACCGGTTGCACCGCGAGCGCAAGCACATGAGTCTGAAGCGG
TGGAAGCATGTGATCAAGTTCCGCACCGCGTTCCCGTTCGAGGTGGACCAGTTTGTGTTGATGTT
GCGGTACATGAAGGCCGACGTGCTGAATTTGTTGGAATAGTGGGG
Right flanking sequence: Indices 2108 -- 2607
CTCGTATATTTGGAAAAATACGTCAATAGTGCATAGGCGAGGGAGTGGATACTGGAGGGCCACGG
AGAGGTAGCTAGTGCGCTGTGCGTCCAGTGGGCGCCCGGTGTGCGCCCACTGGGTCAGTTGGGTG
CGTAACGGGTTAGTTGGGTGTGTAACGGGTTAGTTGGGCGCAGTTTTGCGCAAACTTGCGAGCAT
AGAATTAGAGCTGAGAAAATACATATTCATTAGGATGGGTGTATAAGGGGGTAGTAGGGGTGGGG
GTGGTAGGAGTGGGGGTGGTTGGTGGAAGGGTTGGTAGTGGTGGGTGGTCGGGTTGGTAATGGTG
GGTGGTCGGGTTGGTAATGGTGGGTGGTAGGGTGTAGTGGGTGGGTGTGGTGGTCCACACGATAG
CCGTGACGCTGAATGGGACTAGGAAGGCTATAGTCAGTGGTGTTTTAAACCAAGAGAGTTGAAGA
TTAGCGCGGAAACCACATGACAATGTTGGGTTGAATGCCTGTGAC
Found at i:2077 original size:8 final size:8
Alignment explanation
Indices: 2064--2098 Score: 52
Period size: 8 Copynumber: 4.1 Consensus size: 8
2054 TGCAGCCATT
2064 TGCAACCA
1 TGCAACCA
2072 TGCAACCA
1 TGCAACCA
2080 TGCAACCA
1 TGCAACCA
2088 TTTGCAACCA
1 --TGCAACCA
2098 T
1 T
2099 TTGCAACCAC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
8 17 0.68
10 8 0.32
ACGTcount: A:0.34, C:0.34, G:0.11, T:0.20
Consensus pattern (8 bp):
TGCAACCA
Left flanking sequence: Indices 1564 -- 2063
ACAAACAGCGGGTGTTCTTTTTGTTGTGCATCAACGTGGCGCTCTTTGAGGCGGTGGGGTTCAAA
AAGACGCTCCAGGCGCACCCCGACATCTTGGAGTTGTTTGGCGGGTACCCCGAGATCAACTTGGA
GACCACCCGCACCAAGTTGACCCCGCTGAACAAGCAGGTGCACCAGAACAACTTGGACTACCTGG
TGCTTTCCTATTTGGGCAACATTTTGATCTGGGCCGCCAACATGCAGCGCGAGGCGGGCAAGCCG
TTGTTGTACCAGCACTACGACCTTGGGTTTGACTGCCAGGTGGTGCGGGACAACGTGGGCGGGTG
GCATTTGTGGGACCGGTTGCACCGCGAGCGCAAGCACATGAGTCTGAAGCGGTGGAAGCATGTGA
TCAAGTTCCGCACCGCGTTCCCGTTCGAGGTGGACCAGTTTGTGTTGATGTTGCGGTACATGAAG
GCCGACGTGCTGAATTTGTTGGAATAGTGGGGATTTGCAGCCATT
Right flanking sequence: Indices 2099 -- 2598
TTGCAACCACTCGTATATTTGGAAAAATACGTCAATAGTGCATAGGCGAGGGAGTGGATACTGGA
GGGCCACGGAGAGGTAGCTAGTGCGCTGTGCGTCCAGTGGGCGCCCGGTGTGCGCCCACTGGGTC
AGTTGGGTGCGTAACGGGTTAGTTGGGTGTGTAACGGGTTAGTTGGGCGCAGTTTTGCGCAAACT
TGCGAGCATAGAATTAGAGCTGAGAAAATACATATTCATTAGGATGGGTGTATAAGGGGGTAGTA
GGGGTGGGGGTGGTAGGAGTGGGGGTGGTTGGTGGAAGGGTTGGTAGTGGTGGGTGGTCGGGTTG
GTAATGGTGGGTGGTCGGGTTGGTAATGGTGGGTGGTAGGGTGTAGTGGGTGGGTGTGGTGGTCC
ACACGATAGCCGTGACGCTGAATGGGACTAGGAAGGCTATAGTCAGTGGTGTTTTAAACCAAGAG
AGTTGAAGATTAGCGCGGAAACCACATGACAATGTTGGGTTGAAT
Found at i:2088 original size:26 final size:27
Alignment explanation
Indices: 2054--2107 Score: 83
Period size: 26 Copynumber: 2.0 Consensus size: 27
2044 AGTGGGGATT
*
2054 TGCAGCCATTTGCAACCA-TGCAACCA
1 TGCAACCATTTGCAACCATTGCAACCA
2080 TGCAACCATTTGCAACCATTTGCAACCA
1 TGCAACCATTTGCAACCA-TTGCAACCA
2108 CTCGTATATT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 17 0.68
28 8 0.32
ACGTcount: A:0.31, C:0.33, G:0.13, T:0.22
Consensus pattern (27 bp):
TGCAACCATTTGCAACCATTGCAACCA
Left flanking sequence: Indices 1554 -- 2053
GCCAACCCCGACAAACAGCGGGTGTTCTTTTTGTTGTGCATCAACGTGGCGCTCTTTGAGGCGGT
GGGGTTCAAAAAGACGCTCCAGGCGCACCCCGACATCTTGGAGTTGTTTGGCGGGTACCCCGAGA
TCAACTTGGAGACCACCCGCACCAAGTTGACCCCGCTGAACAAGCAGGTGCACCAGAACAACTTG
GACTACCTGGTGCTTTCCTATTTGGGCAACATTTTGATCTGGGCCGCCAACATGCAGCGCGAGGC
GGGCAAGCCGTTGTTGTACCAGCACTACGACCTTGGGTTTGACTGCCAGGTGGTGCGGGACAACG
TGGGCGGGTGGCATTTGTGGGACCGGTTGCACCGCGAGCGCAAGCACATGAGTCTGAAGCGGTGG
AAGCATGTGATCAAGTTCCGCACCGCGTTCCCGTTCGAGGTGGACCAGTTTGTGTTGATGTTGCG
GTACATGAAGGCCGACGTGCTGAATTTGTTGGAATAGTGGGGATT
Right flanking sequence: Indices 2108 -- 2607
CTCGTATATTTGGAAAAATACGTCAATAGTGCATAGGCGAGGGAGTGGATACTGGAGGGCCACGG
AGAGGTAGCTAGTGCGCTGTGCGTCCAGTGGGCGCCCGGTGTGCGCCCACTGGGTCAGTTGGGTG
CGTAACGGGTTAGTTGGGTGTGTAACGGGTTAGTTGGGCGCAGTTTTGCGCAAACTTGCGAGCAT
AGAATTAGAGCTGAGAAAATACATATTCATTAGGATGGGTGTATAAGGGGGTAGTAGGGGTGGGG
GTGGTAGGAGTGGGGGTGGTTGGTGGAAGGGTTGGTAGTGGTGGGTGGTCGGGTTGGTAATGGTG
GGTGGTCGGGTTGGTAATGGTGGGTGGTAGGGTGTAGTGGGTGGGTGTGGTGGTCCACACGATAG
CCGTGACGCTGAATGGGACTAGGAAGGCTATAGTCAGTGGTGTTTTAAACCAAGAGAGTTGAAGA
TTAGCGCGGAAACCACATGACAATGTTGGGTTGAATGCCTGTGAC
Found at i:2252 original size:20 final size:20
Alignment explanation
Indices: 2224--2275 Score: 86
Period size: 20 Copynumber: 2.6 Consensus size: 20
2214 TGCGCCCACT
*
2224 GGGTCAGTTGGGTGCGTAAC
1 GGGTTAGTTGGGTGCGTAAC
*
2244 GGGTTAGTTGGGTGTGTAAC
1 GGGTTAGTTGGGTGCGTAAC
2264 GGGTTAGTTGGG
1 GGGTTAGTTGGG
2276 CGCAGTTTTG
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.13, C:0.08, G:0.48, T:0.31
Consensus pattern (20 bp):
GGGTTAGTTGGGTGCGTAAC
Left flanking sequence: Indices 1724 -- 2223
CAAGCAGGTGCACCAGAACAACTTGGACTACCTGGTGCTTTCCTATTTGGGCAACATTTTGATCT
GGGCCGCCAACATGCAGCGCGAGGCGGGCAAGCCGTTGTTGTACCAGCACTACGACCTTGGGTTT
GACTGCCAGGTGGTGCGGGACAACGTGGGCGGGTGGCATTTGTGGGACCGGTTGCACCGCGAGCG
CAAGCACATGAGTCTGAAGCGGTGGAAGCATGTGATCAAGTTCCGCACCGCGTTCCCGTTCGAGG
TGGACCAGTTTGTGTTGATGTTGCGGTACATGAAGGCCGACGTGCTGAATTTGTTGGAATAGTGG
GGATTTGCAGCCATTTGCAACCATGCAACCATGCAACCATTTGCAACCATTTGCAACCACTCGTA
TATTTGGAAAAATACGTCAATAGTGCATAGGCGAGGGAGTGGATACTGGAGGGCCACGGAGAGGT
AGCTAGTGCGCTGTGCGTCCAGTGGGCGCCCGGTGTGCGCCCACT
Right flanking sequence: Indices 2276 -- 2775
CGCAGTTTTGCGCAAACTTGCGAGCATAGAATTAGAGCTGAGAAAATACATATTCATTAGGATGG
GTGTATAAGGGGGTAGTAGGGGTGGGGGTGGTAGGAGTGGGGGTGGTTGGTGGAAGGGTTGGTAG
TGGTGGGTGGTCGGGTTGGTAATGGTGGGTGGTCGGGTTGGTAATGGTGGGTGGTAGGGTGTAGT
GGGTGGGTGTGGTGGTCCACACGATAGCCGTGACGCTGAATGGGACTAGGAAGGCTATAGTCAGT
GGTGTTTTAAACCAAGAGAGTTGAAGATTAGCGCGGAAACCACATGACAATGTTGGGTTGAATGC
CTGTGACCAATGGGGGTTTTCTGTGTGCTCTTTGGGTTATCGTGCTCTTTGGGCTATCTGTGGTG
TTTTTCGAGCATGGATTGTTTGGGGTATATCTGTGTCTAGGTTTGGAAGTGTAGGGGTGGGATGG
CTACAATACGGGTCAATTGGGGGTCTAAGCTAACTGGGGAAGCTA
Found at i:2385 original size:15 final size:15
Alignment explanation
Indices: 2349--2387 Score: 60
Period size: 15 Copynumber: 2.6 Consensus size: 15
2339 GGGTGTATAA
* *
2349 GGGGGTAGTAGGGGT
1 GGGGGTGGTAGGAGT
2364 GGGGGTGGTAGGAGT
1 GGGGGTGGTAGGAGT
2379 GGGGGTGGT
1 GGGGGTGGT
2388 TGGTGGAAGG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.10, C:0.00, G:0.69, T:0.21
Consensus pattern (15 bp):
GGGGGTGGTAGGAGT
Left flanking sequence: Indices 1849 -- 2348
GGTTTGACTGCCAGGTGGTGCGGGACAACGTGGGCGGGTGGCATTTGTGGGACCGGTTGCACCGC
GAGCGCAAGCACATGAGTCTGAAGCGGTGGAAGCATGTGATCAAGTTCCGCACCGCGTTCCCGTT
CGAGGTGGACCAGTTTGTGTTGATGTTGCGGTACATGAAGGCCGACGTGCTGAATTTGTTGGAAT
AGTGGGGATTTGCAGCCATTTGCAACCATGCAACCATGCAACCATTTGCAACCATTTGCAACCAC
TCGTATATTTGGAAAAATACGTCAATAGTGCATAGGCGAGGGAGTGGATACTGGAGGGCCACGGA
GAGGTAGCTAGTGCGCTGTGCGTCCAGTGGGCGCCCGGTGTGCGCCCACTGGGTCAGTTGGGTGC
GTAACGGGTTAGTTGGGTGTGTAACGGGTTAGTTGGGCGCAGTTTTGCGCAAACTTGCGAGCATA
GAATTAGAGCTGAGAAAATACATATTCATTAGGATGGGTGTATAA
Right flanking sequence: Indices 2388 -- 2887
TGGTGGAAGGGTTGGTAGTGGTGGGTGGTCGGGTTGGTAATGGTGGGTGGTCGGGTTGGTAATGG
TGGGTGGTAGGGTGTAGTGGGTGGGTGTGGTGGTCCACACGATAGCCGTGACGCTGAATGGGACT
AGGAAGGCTATAGTCAGTGGTGTTTTAAACCAAGAGAGTTGAAGATTAGCGCGGAAACCACATGA
CAATGTTGGGTTGAATGCCTGTGACCAATGGGGGTTTTCTGTGTGCTCTTTGGGTTATCGTGCTC
TTTGGGCTATCTGTGGTGTTTTTCGAGCATGGATTGTTTGGGGTATATCTGTGTCTAGGTTTGGA
AGTGTAGGGGTGGGATGGCTACAATACGGGTCAATTGGGGGTCTAAGCTAACTGGGGAAGCTAAG
GGACGATACTAGAAGCATTATTTGGTGACAACGACTATAAGACAGCGCTTTTCCAGGTGTCCTGG
ACGAGACTAAGCCAATGCCTTATTTGGTAAGCTTGTCAGAGAGGA
Found at i:2408 original size:22 final size:22
Alignment explanation
Indices: 2362--2479 Score: 118
Period size: 22 Copynumber: 5.5 Consensus size: 22
2352 GGTAGTAGGG
**
2362 GTGG-GGGTGGTAGGAG-TGGGG
1 GTGGTGGGTGGTAGG-GTTGGTA
* *
2383 GTGGTTGGTGGAAGGGTTGGTA
1 GTGGTGGGTGGTAGGGTTGGTA
*
2405 GTGGTGGGTGGTCGGGTTGGTA
1 GTGGTGGGTGGTAGGGTTGGTA
* *
2427 ATGGTGGGTGGTCGGGTTGGTA
1 GTGGTGGGTGGTAGGGTTGGTA
*
2449 ATGGTGGGTGGTAGGG-T-GTA
1 GTGGTGGGTGGTAGGGTTGGTA
2469 GTGGGTGGGTG
1 GT-GGTGGGTG
2480 TGGTGGTCCA
Statistics
Matches: 84, Mismatches: 10, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
20 4 0.05
21 14 0.17
22 66 0.79
ACGTcount: A:0.09, C:0.02, G:0.60, T:0.29
Consensus pattern (22 bp):
GTGGTGGGTGGTAGGGTTGGTA
Left flanking sequence: Indices 1862 -- 2361
GGTGGTGCGGGACAACGTGGGCGGGTGGCATTTGTGGGACCGGTTGCACCGCGAGCGCAAGCACA
TGAGTCTGAAGCGGTGGAAGCATGTGATCAAGTTCCGCACCGCGTTCCCGTTCGAGGTGGACCAG
TTTGTGTTGATGTTGCGGTACATGAAGGCCGACGTGCTGAATTTGTTGGAATAGTGGGGATTTGC
AGCCATTTGCAACCATGCAACCATGCAACCATTTGCAACCATTTGCAACCACTCGTATATTTGGA
AAAATACGTCAATAGTGCATAGGCGAGGGAGTGGATACTGGAGGGCCACGGAGAGGTAGCTAGTG
CGCTGTGCGTCCAGTGGGCGCCCGGTGTGCGCCCACTGGGTCAGTTGGGTGCGTAACGGGTTAGT
TGGGTGTGTAACGGGTTAGTTGGGCGCAGTTTTGCGCAAACTTGCGAGCATAGAATTAGAGCTGA
GAAAATACATATTCATTAGGATGGGTGTATAAGGGGGTAGTAGGG
Right flanking sequence: Indices 2480 -- 2979
TGGTGGTCCACACGATAGCCGTGACGCTGAATGGGACTAGGAAGGCTATAGTCAGTGGTGTTTTA
AACCAAGAGAGTTGAAGATTAGCGCGGAAACCACATGACAATGTTGGGTTGAATGCCTGTGACCA
ATGGGGGTTTTCTGTGTGCTCTTTGGGTTATCGTGCTCTTTGGGCTATCTGTGGTGTTTTTCGAG
CATGGATTGTTTGGGGTATATCTGTGTCTAGGTTTGGAAGTGTAGGGGTGGGATGGCTACAATAC
GGGTCAATTGGGGGTCTAAGCTAACTGGGGAAGCTAAGGGACGATACTAGAAGCATTATTTGGTG
ACAACGACTATAAGACAGCGCTTTTCCAGGTGTCCTGGACGAGACTAAGCCAATGCCTTATTTGG
TAAGCTTGTCAGAGAGGATATAATAAGTCTATTCGGTAGTTATGTCTCTTTGAATGGTTATTTTA
GTCTTTCCACCCGAATTACGCGCTATTTACCGAGGATAGTGTACC
Found at i:2458 original size:26 final size:22
Alignment explanation
Indices: 2396--2465 Score: 122
Period size: 22 Copynumber: 3.2 Consensus size: 22
2386 GTTGGTGGAA
*
2396 GGGTTGGTAGTGGTGGGTGGTC
1 GGGTTGGTAATGGTGGGTGGTC
2418 GGGTTGGTAATGGTGGGTGGTC
1 GGGTTGGTAATGGTGGGTGGTC
*
2440 GGGTTGGTAATGGTGGGTGGTA
1 GGGTTGGTAATGGTGGGTGGTC
2462 GGGT
1 GGGT
2466 GTAGTGGGTG
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 46 1.00
ACGTcount: A:0.09, C:0.03, G:0.57, T:0.31
Consensus pattern (22 bp):
GGGTTGGTAATGGTGGGTGGTC
Left flanking sequence: Indices 1896 -- 2395
TGGGACCGGTTGCACCGCGAGCGCAAGCACATGAGTCTGAAGCGGTGGAAGCATGTGATCAAGTT
CCGCACCGCGTTCCCGTTCGAGGTGGACCAGTTTGTGTTGATGTTGCGGTACATGAAGGCCGACG
TGCTGAATTTGTTGGAATAGTGGGGATTTGCAGCCATTTGCAACCATGCAACCATGCAACCATTT
GCAACCATTTGCAACCACTCGTATATTTGGAAAAATACGTCAATAGTGCATAGGCGAGGGAGTGG
ATACTGGAGGGCCACGGAGAGGTAGCTAGTGCGCTGTGCGTCCAGTGGGCGCCCGGTGTGCGCCC
ACTGGGTCAGTTGGGTGCGTAACGGGTTAGTTGGGTGTGTAACGGGTTAGTTGGGCGCAGTTTTG
CGCAAACTTGCGAGCATAGAATTAGAGCTGAGAAAATACATATTCATTAGGATGGGTGTATAAGG
GGGTAGTAGGGGTGGGGGTGGTAGGAGTGGGGGTGGTTGGTGGAA
Right flanking sequence: Indices 2466 -- 2965
GTAGTGGGTGGGTGTGGTGGTCCACACGATAGCCGTGACGCTGAATGGGACTAGGAAGGCTATAG
TCAGTGGTGTTTTAAACCAAGAGAGTTGAAGATTAGCGCGGAAACCACATGACAATGTTGGGTTG
AATGCCTGTGACCAATGGGGGTTTTCTGTGTGCTCTTTGGGTTATCGTGCTCTTTGGGCTATCTG
TGGTGTTTTTCGAGCATGGATTGTTTGGGGTATATCTGTGTCTAGGTTTGGAAGTGTAGGGGTGG
GATGGCTACAATACGGGTCAATTGGGGGTCTAAGCTAACTGGGGAAGCTAAGGGACGATACTAGA
AGCATTATTTGGTGACAACGACTATAAGACAGCGCTTTTCCAGGTGTCCTGGACGAGACTAAGCC
AATGCCTTATTTGGTAAGCTTGTCAGAGAGGATATAATAAGTCTATTCGGTAGTTATGTCTCTTT
GAATGGTTATTTTAGTCTTTCCACCCGAATTACGCGCTATTTACC
Found at i:2647 original size:17 final size:17
Alignment explanation
Indices: 2625--2658 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
2615 GGTTTTCTGT
*
2625 GTGCTCTTTGGGTTATC
1 GTGCTCTTTGGGCTATC
2642 GTGCTCTTTGGGCTATC
1 GTGCTCTTTGGGCTATC
2659 TGTGGTGTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.06, C:0.21, G:0.29, T:0.44
Consensus pattern (17 bp):
GTGCTCTTTGGGCTATC
Left flanking sequence: Indices 2125 -- 2624
ATACGTCAATAGTGCATAGGCGAGGGAGTGGATACTGGAGGGCCACGGAGAGGTAGCTAGTGCGC
TGTGCGTCCAGTGGGCGCCCGGTGTGCGCCCACTGGGTCAGTTGGGTGCGTAACGGGTTAGTTGG
GTGTGTAACGGGTTAGTTGGGCGCAGTTTTGCGCAAACTTGCGAGCATAGAATTAGAGCTGAGAA
AATACATATTCATTAGGATGGGTGTATAAGGGGGTAGTAGGGGTGGGGGTGGTAGGAGTGGGGGT
GGTTGGTGGAAGGGTTGGTAGTGGTGGGTGGTCGGGTTGGTAATGGTGGGTGGTCGGGTTGGTAA
TGGTGGGTGGTAGGGTGTAGTGGGTGGGTGTGGTGGTCCACACGATAGCCGTGACGCTGAATGGG
ACTAGGAAGGCTATAGTCAGTGGTGTTTTAAACCAAGAGAGTTGAAGATTAGCGCGGAAACCACA
TGACAATGTTGGGTTGAATGCCTGTGACCAATGGGGGTTTTCTGT
Right flanking sequence: Indices 2659 -- 3158
TGTGGTGTTTTTCGAGCATGGATTGTTTGGGGTATATCTGTGTCTAGGTTTGGAAGTGTAGGGGT
GGGATGGCTACAATACGGGTCAATTGGGGGTCTAAGCTAACTGGGGAAGCTAAGGGACGATACTA
GAAGCATTATTTGGTGACAACGACTATAAGACAGCGCTTTTCCAGGTGTCCTGGACGAGACTAAG
CCAATGCCTTATTTGGTAAGCTTGTCAGAGAGGATATAATAAGTCTATTCGGTAGTTATGTCTCT
TTGAATGGTTATTTTAGTCTTTCCACCCGAATTACGCGCTATTTACCGAGGATAGTGTACCCTTC
TTTCAACTACCCACTACAATGTCACGTGACTTATGGCCTAACTAGGTAAGACAGATGGGGCCACA
AGATTTCCACGCCATGGGGTCTTGGTACAGATTTCATCAGGACCAAAAGGTGCGGTCATGGCTTC
AAAACAACATATAAACGCGACACCCCAATCGAGGCCAACATATCC
Found at i:4314 original size:10 final size:10
Alignment explanation
Indices: 4299--4339 Score: 82
Period size: 10 Copynumber: 4.1 Consensus size: 10
4289 CCGCGTTACG
4299 AGCTGACCTA
1 AGCTGACCTA
4309 AGCTGACCTA
1 AGCTGACCTA
4319 AGCTGACCTA
1 AGCTGACCTA
4329 AGCTGACCTA
1 AGCTGACCTA
4339 A
1 A
4340 TACATTAGTG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 31 1.00
ACGTcount: A:0.32, C:0.29, G:0.20, T:0.20
Consensus pattern (10 bp):
AGCTGACCTA
Left flanking sequence: Indices 3799 -- 4298
GTAATTTTGATTCGGACACTACTTTTGCAAGTTCTTGGTTCACACACGAAAGACTACCCTAAACA
CAGTGTATCTGCCTCTGAACCACTCATTTAGTTTGCTTAAACGTGTGTCAACAGTATTCGACCAT
CAATGTTCGCGTATTCATTCTATGGGACGAGAAATTCATTCCTAAACCGGCCCCCTCTCACAAAT
GATGACCACCCTTAAACGACGAGCTATACGGTGGCAGTTCAAAATTTTCCTAAGACTTTACGAGT
ATTACCTAACATGTTATGTTAGACACTTTACGAACTCCAAAATTTTCTGGTATATCATGTGATCT
GCATCACGTGATTTGCAAAACTAATATTGGTAACTTGTCATGTGAGTCAAATCACGTGTTCTTTT
CCCAAGATTGTTATTAGTAAGTCATGTGACCATTTCATGTGACTTTGAGTATAGTATGTATTACA
TAATATTCACTGTTAGAGTTACGAGTATTACATAACCGCGTTACG
Right flanking sequence: Indices 4340 -- 4839
TACATTAGTGCGGCTCAAAGCATGTGATATTCATCACGTGACTTTACTGTTAGTACCGTAGATAG
CGTTGATTATGGCGAACCTGTATATATCCTAAATATTACTATAAGCCCTCAGTACGGCTTCAGGG
TAGCCCGCTCATGCAGGCTACCCCGAAGGCGCACCCAGTGCTTAACTATACAATTATAGAAACCC
GGATTGGATACCAATGGCACCACCAACAGGGGGAAAAAACGGTGCCAATAGCACCCGATCCAACG
AATCGAATCGAGCACCACTGACACCACCAACAGGGGGAAAAGGAGCCATTGGCATCCAACCCTAA
CAACAGCAGCAACAACACCAACACCAACACCAACACACCAACACCACCAACACCAATGAAAAGGG
GGTGGCACCACTAGTACTTCTGATCTCGTCTCTCATATGGCAAAGGAAGCGAAGCCCAGAGGCTT
ACAACTCCCCGCGCCGACCACGGGATGGTTCTGTGGCGATACCGC
Found at i:4688 original size:6 final size:6
Alignment explanation
Indices: 4677--4720 Score: 54
Period size: 6 Copynumber: 7.5 Consensus size: 6
4667 ACAGCAGCAA
* * *
4677 CAACAC CAACAC CAACAC CAACA- CACCAA CACCAC CAACAC CAA
1 CAACAC CAACAC CAACAC CAACAC CAACAC CAACAC CAACAC CAA
4721 TGAAAAGGGG
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
5 4 0.12
6 30 0.88
ACGTcount: A:0.50, C:0.50, G:0.00, T:0.00
Consensus pattern (6 bp):
CAACAC
Left flanking sequence: Indices 4177 -- 4676
ACGTGTTCTTTTCCCAAGATTGTTATTAGTAAGTCATGTGACCATTTCATGTGACTTTGAGTATA
GTATGTATTACATAATATTCACTGTTAGAGTTACGAGTATTACATAACCGCGTTACGAGCTGACC
TAAGCTGACCTAAGCTGACCTAAGCTGACCTAATACATTAGTGCGGCTCAAAGCATGTGATATTC
ATCACGTGACTTTACTGTTAGTACCGTAGATAGCGTTGATTATGGCGAACCTGTATATATCCTAA
ATATTACTATAAGCCCTCAGTACGGCTTCAGGGTAGCCCGCTCATGCAGGCTACCCCGAAGGCGC
ACCCAGTGCTTAACTATACAATTATAGAAACCCGGATTGGATACCAATGGCACCACCAACAGGGG
GAAAAAACGGTGCCAATAGCACCCGATCCAACGAATCGAATCGAGCACCACTGACACCACCAACA
GGGGGAAAAGGAGCCATTGGCATCCAACCCTAACAACAGCAGCAA
Right flanking sequence: Indices 4721 -- 5220
TGAAAAGGGGGTGGCACCACTAGTACTTCTGATCTCGTCTCTCATATGGCAAAGGAAGCGAAGCC
CAGAGGCTTACAACTCCCCGCGCCGACCACGGGATGGTTCTGTGGCGATACCGCCCATCCTGACG
CTAGATTGCACCTCCCACCTCCCGGCCCGTCGGCCATCGAGTAGAAGCGTGCAACTGCACATGTC
AGGACTGTTCGAGGACCCGTAGCTGGTGGGTCGCGACGCCACCAGTAACAAGCCCTGTCACCAGA
CCAACAGACGCTGAGCCATTACCATGGCGCGAAGCGCCAACGGAAAGTGACCCAGCCGAGAGACT
CCATCAGAAGTACCAACAGCACCGAGGCTGTGGTGAGCAAGTATCACCACGCTAACGACAAGCTT
TTGTAGCCTCCTTGGGGGGATTTTTTTCCCCCATCTTTGATTTTCTTTTTGCTTGTCGCTGCCTT
CCGTAGTAACGGGAAAGGAGCCGGGCTTGCAGGGTGCAAGCGAGA
Found at i:9163 original size:36 final size:36
Alignment explanation
Indices: 9123--9334 Score: 221
Period size: 36 Copynumber: 5.9 Consensus size: 36
9113 CTTAAATTCA
* **
9123 GCAGAGTAAACTGCATGTAAATTTGCAGAGTATTTG
1 GCAGAGTAGACTGCATACAAATTTGCAGAGTATTTG
* *** *
9159 GCAGAGTAGCCTGCATACAAACCAGCAGAGTATTTT
1 GCAGAGTAGACTGCATACAAATTTGCAGAGTATTTG
** * *
9195 GCAGAGTTTACTGCATACAATTTTGCAGAGTATTTA
1 GCAGAGTAGACTGCATACAAATTTGCAGAGTATTTG
** * *
9231 GCAGAGTTTACTGCATACAATTTTGCAGAGTAATTG
1 GCAGAGTAGACTGCATACAAATTTGCAGAGTATTTG
* *
9267 GCAGAGTAGACTGCATTC-AATTTAGCAGAGTATTGG
1 GCAGAGTAGACTGCATACAAATTT-GCAGAGTATTTG
*
9303 GCAGAGTAGACTGCATTC-AATTTAGCAGAGTA
1 GCAGAGTAGACTGCATACAAATTT-GCAGAGTA
9335 GAATGCATAT
Statistics
Matches: 151, Mismatches: 24, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
35 4 0.03
36 147 0.97
ACGTcount: A:0.32, C:0.15, G:0.24, T:0.29
Consensus pattern (36 bp):
GCAGAGTAGACTGCATACAAATTTGCAGAGTATTTG
Left flanking sequence: Indices 8623 -- 9122
GGCGTACATCACCAGGGATATGTTGTTGCCAACCAGGCCAGCCGATTTGACGGCTCCTAAAGCCA
TCGATCGCCTTTGTTCCGGAGTTCACAAGCCATCAAATGACTAACACGTTTTGGCTCAATCAAAA
TGACCGCAACAAGTCAGCTGAAGACACCATGCCAGCTAGAGCCTTTCAGAAACACCAGCTATGCC
ATGGACAGCTCATACCAGGCCTTTTTGATGGGGTTGTGTCGTGTGTTGACCTGTGGACGACGTTG
AGAAAGTACTGGCAGTTACGAGAGAGTTACGAGAGAAATGCTGCACGTGAAGCTATTTGCGAGCT
GTGTCTGCTACACAAGGATTATTTTCCGAGACGACTGCACACAAGCTGTTTTGCAGAGGAAAATC
CGCTTTTCAGCAGAGTTCACTGCACAGAGATACAATTCAGCAGAGTACACATATTTATTAGCAGA
GTAAACTGTATATAAGTGCATTTTAGCAGAGTAGACTTAAATTCA
Right flanking sequence: Indices 9335 -- 9834
GAATGCATATAATGTAGCAGAGTTTCCTACACCTGAAAACAATCACGTGATTGGTCTACAAACGG
CGGTGCCGTAGGTTTCGTATTCTGTGTATTATACGAGGTGTATAGCTTGCATGAGAGCCATGCAG
GCTAATGCATCTCGTGCATATTTTATTTTTAAATTATAAACCCGGTCTGGTTGTTGGCCCGGGGG
CCCCAGCTAGAATAATAGTACAGTGTGCCTACACCTATATAGACTTGCTGGGTAACCCGGCAACC
AGACACTCCCCTAACCCCTGCTTCGGGAGCAAGTTCCTTTGATTCCGCGAGAGAGAGCTAGACTG
CTCCCTCCAGACGCCGTTACCACAGACTCAGCAGTGCCGTAGCACCCACCCTGGGAGCCAGATTG
CCCACTTCAAACCTCCAGGCCACGCGACCATCGGGGAAGTGTTAGCAACTGACGGGGACCCAGGG
CTGTCCAGGAGACCCCTAGTATTGGCTGGCCAGACCAATACTAGG
Found at i:9200 original size:12 final size:12
Alignment explanation
Indices: 9183--9274 Score: 53
Period size: 12 Copynumber: 7.7 Consensus size: 12
9173 ATACAAACCA
9183 GCAGAGTATTTT
1 GCAGAGTATTTT
*
9195 GCAGAGT-TTACT
1 GCAGAGTATT-TT
* **
9207 GCATACAATTTT
1 GCAGAGTATTTT
*
9219 GCAGAGTATTTA
1 GCAGAGTATTTT
*
9231 GCAGAGT-TTACT
1 GCAGAGTATT-TT
* **
9243 GCATACAATTTT
1 GCAGAGTATTTT
* *
9255 GCAGAGTAATTG
1 GCAGAGTATTTT
9267 GCAGAGTA
1 GCAGAGTA
9275 GACTGCATTC
Statistics
Matches: 56, Mismatches: 20, Indels: 8
0.67 0.24 0.10
Matches are distributed among these distances:
11 4 0.07
12 48 0.86
13 4 0.07
ACGTcount: A:0.30, C:0.13, G:0.23, T:0.34
Consensus pattern (12 bp):
GCAGAGTATTTT
Left flanking sequence: Indices 8683 -- 9182
AGCCATCGATCGCCTTTGTTCCGGAGTTCACAAGCCATCAAATGACTAACACGTTTTGGCTCAAT
CAAAATGACCGCAACAAGTCAGCTGAAGACACCATGCCAGCTAGAGCCTTTCAGAAACACCAGCT
ATGCCATGGACAGCTCATACCAGGCCTTTTTGATGGGGTTGTGTCGTGTGTTGACCTGTGGACGA
CGTTGAGAAAGTACTGGCAGTTACGAGAGAGTTACGAGAGAAATGCTGCACGTGAAGCTATTTGC
GAGCTGTGTCTGCTACACAAGGATTATTTTCCGAGACGACTGCACACAAGCTGTTTTGCAGAGGA
AAATCCGCTTTTCAGCAGAGTTCACTGCACAGAGATACAATTCAGCAGAGTACACATATTTATTA
GCAGAGTAAACTGTATATAAGTGCATTTTAGCAGAGTAGACTTAAATTCAGCAGAGTAAACTGCA
TGTAAATTTGCAGAGTATTTGGCAGAGTAGCCTGCATACAAACCA
Right flanking sequence: Indices 9275 -- 9774
GACTGCATTCAATTTAGCAGAGTATTGGGCAGAGTAGACTGCATTCAATTTAGCAGAGTAGAATG
CATATAATGTAGCAGAGTTTCCTACACCTGAAAACAATCACGTGATTGGTCTACAAACGGCGGTG
CCGTAGGTTTCGTATTCTGTGTATTATACGAGGTGTATAGCTTGCATGAGAGCCATGCAGGCTAA
TGCATCTCGTGCATATTTTATTTTTAAATTATAAACCCGGTCTGGTTGTTGGCCCGGGGGCCCCA
GCTAGAATAATAGTACAGTGTGCCTACACCTATATAGACTTGCTGGGTAACCCGGCAACCAGACA
CTCCCCTAACCCCTGCTTCGGGAGCAAGTTCCTTTGATTCCGCGAGAGAGAGCTAGACTGCTCCC
TCCAGACGCCGTTACCACAGACTCAGCAGTGCCGTAGCACCCACCCTGGGAGCCAGATTGCCCAC
TTCAAACCTCCAGGCCACGCGACCATCGGGGAAGTGTTAGCAACT
Found at i:9324 original size:72 final size:71
Alignment explanation
Indices: 9123--9334 Score: 244
Period size: 72 Copynumber: 2.9 Consensus size: 71
9113 CTTAAATTCA
* * ***
9123 GCAGAGTAAACTGCATGTAAATTTGCAGAGTATTTGGCAGAGTAGCCTGCATACAAACCAGCAGA
1 GCAGAGTAAACTGCAT-TCAATTTGCAGAGTATTTGGCAGAGTAGACTGCATACAATTTAGCAGA
* *
9188 GTATTTT
65 GTAATTG
** * * ** *
9195 GCAGAGTTTACTGCATACAATTTTGCAGAGTATTTAGCAGAGTTTACTGCATACAATTTTGCAGA
1 GCAGAGTAAACTGCATTCAA-TTTGCAGAGTATTTGGCAGAGTAGACTGCATACAATTTAGCAGA
9260 GTAATTG
65 GTAATTG
* * *
9267 GCAGAGTAGACTGCATTCAATTTAGCAGAGTATTGGGCAGAGTAGACTGCATTCAATTTAGCAGA
1 GCAGAGTAAACTGCATTCAATTT-GCAGAGTATTTGGCAGAGTAGACTGCATACAATTTAGCAGA
9332 GTA
65 GTA
9335 GAATGCATAT
Statistics
Matches: 115, Mismatches: 23, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
71 5 0.04
72 110 0.96
ACGTcount: A:0.32, C:0.15, G:0.24, T:0.29
Consensus pattern (71 bp):
GCAGAGTAAACTGCATTCAATTTGCAGAGTATTTGGCAGAGTAGACTGCATACAATTTAGCAGAG
TAATTG
Left flanking sequence: Indices 8623 -- 9122
GGCGTACATCACCAGGGATATGTTGTTGCCAACCAGGCCAGCCGATTTGACGGCTCCTAAAGCCA
TCGATCGCCTTTGTTCCGGAGTTCACAAGCCATCAAATGACTAACACGTTTTGGCTCAATCAAAA
TGACCGCAACAAGTCAGCTGAAGACACCATGCCAGCTAGAGCCTTTCAGAAACACCAGCTATGCC
ATGGACAGCTCATACCAGGCCTTTTTGATGGGGTTGTGTCGTGTGTTGACCTGTGGACGACGTTG
AGAAAGTACTGGCAGTTACGAGAGAGTTACGAGAGAAATGCTGCACGTGAAGCTATTTGCGAGCT
GTGTCTGCTACACAAGGATTATTTTCCGAGACGACTGCACACAAGCTGTTTTGCAGAGGAAAATC
CGCTTTTCAGCAGAGTTCACTGCACAGAGATACAATTCAGCAGAGTACACATATTTATTAGCAGA
GTAAACTGTATATAAGTGCATTTTAGCAGAGTAGACTTAAATTCA
Right flanking sequence: Indices 9335 -- 9834
GAATGCATATAATGTAGCAGAGTTTCCTACACCTGAAAACAATCACGTGATTGGTCTACAAACGG
CGGTGCCGTAGGTTTCGTATTCTGTGTATTATACGAGGTGTATAGCTTGCATGAGAGCCATGCAG
GCTAATGCATCTCGTGCATATTTTATTTTTAAATTATAAACCCGGTCTGGTTGTTGGCCCGGGGG
CCCCAGCTAGAATAATAGTACAGTGTGCCTACACCTATATAGACTTGCTGGGTAACCCGGCAACC
AGACACTCCCCTAACCCCTGCTTCGGGAGCAAGTTCCTTTGATTCCGCGAGAGAGAGCTAGACTG
CTCCCTCCAGACGCCGTTACCACAGACTCAGCAGTGCCGTAGCACCCACCCTGGGAGCCAGATTG
CCCACTTCAAACCTCCAGGCCACGCGACCATCGGGGAAGTGTTAGCAACTGACGGGGACCCAGGG
CTGTCCAGGAGACCCCTAGTATTGGCTGGCCAGACCAATACTAGG
Found at i:9335 original size:24 final size:24
Alignment explanation
Indices: 9303--9357 Score: 76
Period size: 24 Copynumber: 2.3 Consensus size: 24
9293 AGAGTATTGG
* *
9303 GCAGAGTAGACTGCAT-TCAATTTA
1 GCAGAGTAGAATGCATAT-AATGTA
9327 GCAGAGTAGAATGCATATAATGTA
1 GCAGAGTAGAATGCATATAATGTA
9351 GCAGAGT
1 GCAGAGT
9358 TTCCTACACC
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
24 27 0.96
25 1 0.04
ACGTcount: A:0.36, C:0.13, G:0.25, T:0.25
Consensus pattern (24 bp):
GCAGAGTAGAATGCATATAATGTA
Left flanking sequence: Indices 8803 -- 9302
AACACCAGCTATGCCATGGACAGCTCATACCAGGCCTTTTTGATGGGGTTGTGTCGTGTGTTGAC
CTGTGGACGACGTTGAGAAAGTACTGGCAGTTACGAGAGAGTTACGAGAGAAATGCTGCACGTGA
AGCTATTTGCGAGCTGTGTCTGCTACACAAGGATTATTTTCCGAGACGACTGCACACAAGCTGTT
TTGCAGAGGAAAATCCGCTTTTCAGCAGAGTTCACTGCACAGAGATACAATTCAGCAGAGTACAC
ATATTTATTAGCAGAGTAAACTGTATATAAGTGCATTTTAGCAGAGTAGACTTAAATTCAGCAGA
GTAAACTGCATGTAAATTTGCAGAGTATTTGGCAGAGTAGCCTGCATACAAACCAGCAGAGTATT
TTGCAGAGTTTACTGCATACAATTTTGCAGAGTATTTAGCAGAGTTTACTGCATACAATTTTGCA
GAGTAATTGGCAGAGTAGACTGCATTCAATTTAGCAGAGTATTGG
Right flanking sequence: Indices 9358 -- 9857
TTCCTACACCTGAAAACAATCACGTGATTGGTCTACAAACGGCGGTGCCGTAGGTTTCGTATTCT
GTGTATTATACGAGGTGTATAGCTTGCATGAGAGCCATGCAGGCTAATGCATCTCGTGCATATTT
TATTTTTAAATTATAAACCCGGTCTGGTTGTTGGCCCGGGGGCCCCAGCTAGAATAATAGTACAG
TGTGCCTACACCTATATAGACTTGCTGGGTAACCCGGCAACCAGACACTCCCCTAACCCCTGCTT
CGGGAGCAAGTTCCTTTGATTCCGCGAGAGAGAGCTAGACTGCTCCCTCCAGACGCCGTTACCAC
AGACTCAGCAGTGCCGTAGCACCCACCCTGGGAGCCAGATTGCCCACTTCAAACCTCCAGGCCAC
GCGACCATCGGGGAAGTGTTAGCAACTGACGGGGACCCAGGGCTGTCCAGGAGACCCCTAGTATT
GGCTGGCCAGACCAATACTAGGCGTCATCCCTCGCAACCAAGTCT
Found at i:11180 original size:14 final size:14
Alignment explanation
Indices: 11161--11209 Score: 80
Period size: 14 Copynumber: 3.5 Consensus size: 14
11151 TAACTGTCCA
*
11161 ATGCCAACACATAC
1 ATGCCAACACAAAC
*
11175 ATGCCAACACAGAC
1 ATGCCAACACAAAC
11189 ATGCCAACACAAAC
1 ATGCCAACACAAAC
11203 ATGCCAA
1 ATGCCAA
11210 ACACCTACTA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 33 1.00
ACGTcount: A:0.45, C:0.35, G:0.10, T:0.10
Consensus pattern (14 bp):
ATGCCAACACAAAC
Left flanking sequence: Indices 10661 -- 11160
GTGGTATATGAAATCAGGATCGAGATGCGGTCTGATCGCGGATCTTATTGAGATATATTATTTGA
TAGCTCGATCGGAGGTCACTCGTACTTTCGAGGCTTAAATTGGACTTGATCTCACCAACCTGGCG
GGTTCGCTTGAAGGGCTTACTGAAGGCTGGGAAACTCTTACGCCTGGAGTGGTTTAGTGCACAAT
TCCGAGGAAACTGTAGGCTGGCTGGGTGTAGGCAACTCTAACCAGGGTTAACGGGGACCATCACC
AAGTGCGAGGAAGACGAGGACCTCGGAGGCAAGGTTGAGTTTTGTAACAAAACGCCTGGTAATTG
ATACGAAGAGGTAAGATTTAGCCACTTTAAACTGTAGTGTATCATCGGATGAACTCACTCACCAT
GGTCGACTAACATCATTTGTAAGCACGTCGCCACGCCAACGAGCCCAGCTCCACACTGGCCCCAA
CCTCTTCTACCCCTTCAGGGTCCTAGCTACCAGCCTAACTGTCCA
Right flanking sequence: Indices 11210 -- 11709
ACACCTACTACAATCCCCCCGCCTATCCTCAATCTACCCTCTTTCTACAACCCTCTCTTACTCAT
TTCATTTCTCTATTACTATTCACACTCTAACCCGTGCGGTGGATAAGGTGCACCCCCAGGTCCGT
CTCGATAATGTCACTGATCTCGCCAACGTTCAACCCAAACGCCGCCTCCTCAAACAGCGGCTGCA
TCTGGCCCCGGGCAAAGAAGCCCAAGTCGCCACCCTTGTCGTGCAGCAGGCAGTCAGACTCGGTC
TCCGCCAACTCCTCCAACTTGATCTCGCCGTTCAAAATCCGCTTTTGAAACCCTCTCAACTTCTG
GATCGCCTCGTCCCGCGAGAGGGTGATCCCCTCGGGCAGCTTCCACAGCTTGGGTCTGCGGGACT
GGGCGTGCTTCACCAAGAGGTGGGCCGCACGCACCTTGCCGTCGGACACCACCGGCTTGTTGCCG
TTGGTCTTAAACTGGCGCAAGTATTCCTTGAGCTTGTCCTCGTCC
Found at i:12426 original size:34 final size:32
Alignment explanation
Indices: 12379--12468 Score: 98
Period size: 28 Copynumber: 2.8 Consensus size: 32
12369 CACCGAACAT
12379 ACACCAATTCTACCCTAGCCCATTCTCCCACCAC
1 ACACCAATTCTACCCTAG-CCATTCTCCCA-CAC
* *
12413 ACATCAATTCTACCTTAG-C--TC-CCCACAC
1 ACACCAATTCTACCCTAGCCATTCTCCCACAC
*
12441 ACACCAATTCTACCCTAGCTTATTCTCC
1 ACACCAATTCTACCCTAGC-CATTCTCC
12469 AGACACATTC
Statistics
Matches: 46, Mismatches: 5, Indels: 11
0.74 0.08 0.18
Matches are distributed among these distances:
28 19 0.41
29 4 0.09
30 2 0.04
32 3 0.07
33 2 0.04
34 16 0.35
ACGTcount: A:0.27, C:0.44, G:0.03, T:0.26
Consensus pattern (32 bp):
ACACCAATTCTACCCTAGCCATTCTCCCACAC
Left flanking sequence: Indices 11879 -- 12378
GTTGAGGGTGTGTGCAGGAGGTGGTAAGGTGATGGCGGTGGCGAAGGAGAAGAGCTGGGGCGAAG
AGTTGGTGGTGGGTCAGATGGCAGGTCAATTGCGAGGGTGGAGGTTTGTTCATGCTTGTCTTGAG
TCATGTTTGTCTTTTGAGCTGGCTCTCATAACTCGGTACGAGAAATACACGTCTTGTATATCCAA
CGCCACTAATGCCTGGACTCCGCAATTGGTTCAAACAACATGCTAGCATCCCATTTGGGTGTTTT
TGAATGACCTTAGTCTCGCATAAGTCGTCTCTTACAAGCTTTCGTCTATTCTCGTCTACACCACG
CCACCCATACCCAATCGGGACACCAAAGAGACCGTCGTCAAAGGACTAGAACAAGTTGTAGACCC
AAGCCTCTTTCTACAGCTAGGTACCAGGTAAAAGACTAACCCAACCGGTAACACCGCCAACGACG
ACGCTTAAACTATCTAGTCCCAAACTCCAGTGAAACACCGAACAT
Right flanking sequence: Indices 12469 -- 12968
AGACACATTCCACATCCCCCCTTCACTCCAATGCCGCATTTATTCAACGACAATACTATAAAAAG
ACCTGTTTCTCTAGTTAACCACACCCCGCTGCTTGAGCGCCGTCACCAACTGCTTGTTCACGTCG
TCAATGGTCAGGTCACACCGGACCTTGACCACACGGCCCTGTTTGTCAAAGTAGTCGACCACGGG
CATCAGGGTGTCGACAAACACCTGGAACCGCTTCTTGATCAGCTCGACGTTGTCGTCAGCCCGGC
CCAGCGTCTTGCCGCGCTCCATCAACCGCTGCAACATCACCTGCTCGGGACATTCAAAGAAAATC
GTGAGCTTCAGCTGGACAATGTCGTTCTCGAAGGTGATCGCCTGGTCCATCTTGCGCGGGAACCC
GTCCACGAGGAACTTCTGGTTGCCCTTGGCGTGGTTCTCGCGGATCGCCTGCTGCAAAAGCGCCA
CCGTGATCTCCTGGGGCACAATCTGCCCGTTCTTGATGTAGTTGG
Found at i:12475 original size:34 final size:31
Alignment explanation
Indices: 12374--12475 Score: 84
Period size: 34 Copynumber: 3.2 Consensus size: 31
12364 TGAAACACCG
*
12374 AACATACACCAATTCTACCCTAGCCCATTCTCCC
1 AACACACACCAATTCTACCCTAG--CATTCT-CC
* * *
12408 ACCACACATCAATTCTACCTTAGC--TC-CC
1 AACACACACCAATTCTACCCTAGCATTCTCC
*
12436 CACACACACCAATTCTACCCTAGCTTATTCTCC
1 AACACACACCAATTCTACCCTAGC--ATTCTCC
12469 AGACACA
1 A-ACACA
12476 TTCCACATCC
Statistics
Matches: 53, Mismatches: 9, Indels: 12
0.72 0.12 0.16
Matches are distributed among these distances:
28 22 0.42
30 2 0.04
32 3 0.06
33 2 0.04
34 24 0.45
ACGTcount: A:0.30, C:0.42, G:0.04, T:0.24
Consensus pattern (31 bp):
AACACACACCAATTCTACCCTAGCATTCTCC
Left flanking sequence: Indices 11874 -- 12373
GTGCGGTTGAGGGTGTGTGCAGGAGGTGGTAAGGTGATGGCGGTGGCGAAGGAGAAGAGCTGGGG
CGAAGAGTTGGTGGTGGGTCAGATGGCAGGTCAATTGCGAGGGTGGAGGTTTGTTCATGCTTGTC
TTGAGTCATGTTTGTCTTTTGAGCTGGCTCTCATAACTCGGTACGAGAAATACACGTCTTGTATA
TCCAACGCCACTAATGCCTGGACTCCGCAATTGGTTCAAACAACATGCTAGCATCCCATTTGGGT
GTTTTTGAATGACCTTAGTCTCGCATAAGTCGTCTCTTACAAGCTTTCGTCTATTCTCGTCTACA
CCACGCCACCCATACCCAATCGGGACACCAAAGAGACCGTCGTCAAAGGACTAGAACAAGTTGTA
GACCCAAGCCTCTTTCTACAGCTAGGTACCAGGTAAAAGACTAACCCAACCGGTAACACCGCCAA
CGACGACGCTTAAACTATCTAGTCCCAAACTCCAGTGAAACACCG
Right flanking sequence: Indices 12476 -- 12975
TTCCACATCCCCCCTTCACTCCAATGCCGCATTTATTCAACGACAATACTATAAAAAGACCTGTT
TCTCTAGTTAACCACACCCCGCTGCTTGAGCGCCGTCACCAACTGCTTGTTCACGTCGTCAATGG
TCAGGTCACACCGGACCTTGACCACACGGCCCTGTTTGTCAAAGTAGTCGACCACGGGCATCAGG
GTGTCGACAAACACCTGGAACCGCTTCTTGATCAGCTCGACGTTGTCGTCAGCCCGGCCCAGCGT
CTTGCCGCGCTCCATCAACCGCTGCAACATCACCTGCTCGGGACATTCAAAGAAAATCGTGAGCT
TCAGCTGGACAATGTCGTTCTCGAAGGTGATCGCCTGGTCCATCTTGCGCGGGAACCCGTCCACG
AGGAACTTCTGGTTGCCCTTGGCGTGGTTCTCGCGGATCGCCTGCTGCAAAAGCGCCACCGTGAT
CTCCTGGGGCACAATCTGCCCGTTCTTGATGTAGTTGGCGATGAG
Found at i:15163 original size:11 final size:11
Alignment explanation
Indices: 15147--15173 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
15137 CAACGCCACT
15147 GCACCTCAACC
1 GCACCTCAACC
15158 GCACCTCAACC
1 GCACCTCAACC
15169 GCACC
1 GCACC
15174 CACTGCACCA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.26, C:0.56, G:0.11, T:0.07
Consensus pattern (11 bp):
GCACCTCAACC
Left flanking sequence: Indices 14647 -- 15146
GTGTATTTACGAGTGTAGTGGGCCGACGGGAAGTGTACCTATGGTGTCAGACAAGAGGGTACAGA
GGTATGTTTGGCTTGGCCATGGCCCCTGCCCCAGATGTCTCAACAACTCCACCTGTGAGCCTAGC
TTAGAATAGTTTAAACCATATTTTTCAGTGGCCAGACCACGAAACCTTACGTGGTGCTACACCTA
AAGTAACACGCTTTGTACCTACCTAACCACCACAGTAACTAGCTTACAACCCAGAGATACCTACG
TCCAACACCCCTATAACCCCACTGGTTTCTCTCCTTTCCAATCTCTTTCTCCTGGTAGCCTCCAC
TGAATTTGCCACCAAACACAACAAACTAACCCACCACTCAATGGACTGAAAAATCACCACCAACC
CAACGCCACGGCTTCCACACCACCCTCACCCCCACCCAAACCACCCCTCCATCCCCCGCCACCCG
TGGTCCCCACCGATCCAGTGGCAACACCCGTGCAGCAACGCCACT
Right flanking sequence: Indices 15174 -- 15673
CACTGCACCACACCCACACCAACCATGGAACGATTACAGCGGCTCTTAGGGCTGGGAGCCACTCT
TGGCGGCGCTGCGCCGCCGCAGACGGACGGACCCGCCATTGACAACGCGGAAACCGTCTACATTT
CCCTGTTGGCCCTCCTCAAAATGCTTAAACACGCGCGTGCCGGTGTGCCCATGGAGGTGATGGGC
CTCATGTTGGGCGAGTTTGTGGACGACTTCACCATCCACGTCATTGACGTGTTTGCCATGCCCCA
GCTGGGTACCGGAGTGTCGGTGGAGGCGGTCGACGATGTGTTCCAGACGAAAATGATGGACATGT
TGCGTCAGACCGGGCGCGACCAGATGGTGGTTGGCTGGTACCACTCGCACCCGGGTTTTGGGTGC
TGGTTGCTGTCGGTGGACGTGCTGACCCAGCAGCTGTTTGAACAGTTGAACAAACGTGCCGTGGC
CGTGGTGGTGGACCCCATCCAGTCGGTCAAGGGTAAGGTGGTGAT
Found at i:16589 original size:11 final size:11
Alignment explanation
Indices: 16573--16597 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
16563 AGAATGGCGT
16573 GTGTCTTTTTG
1 GTGTCTTTTTG
16584 GTGTCTTTTTG
1 GTGTCTTTTTG
16595 GTG
1 GTG
16598 GCTTCTTGGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.00, C:0.08, G:0.32, T:0.60
Consensus pattern (11 bp):
GTGTCTTTTTG
Left flanking sequence: Indices 16073 -- 16572
GTTGATCGAGGAGAACATCACCACGTTGTTGACGCTGAACATCAACGCGTTGGCCATTCAGTAGG
AATACAGGGAGAAATAGATGTGCGGTAGTTAAAAGTTTGAGCAAGACTGGAAGGGGCGGAGTGGT
TCCGGGTGTAGAATGTGTATATTGAGTGGTTCACTAGCGCTTACCGTGCCTATATTGGTTTTGTT
AGTGTCATGTGACCGTGAATCACGTGACCAAAAACCAAACGAACAGAGGTTCCCCAGGGGCCCTG
TTTTCCCGAAATTTTTTTCAGCGGTCTGTGAGCGTCAGCATGTGCCTTGTAGTGGTTTGGAGCGG
GTTCGGTTGTCTTTTCTGCTCTAGGGTGACCCTGGAGCTCGAATTGCCCAACCACAAACTCCATG
GCTTATATGCACAACCGTACACTGGAGGTGGCCAAGGCTAGCAGGAGAAAACCCGGGAAATCAAC
GTAAAACTCCTGTAGCGCAAGCGAGACCAGTGCTAAGAATGGCGT
Right flanking sequence: Indices 16598 -- 17097
GCTTCTTGGCGTGGCGCCTGCTTGATTTGGTTGAGATAGGGCGCGTAGGCAGCCCAGTAGGAAAG
ACCACAACATACGGGGATTGAGACCGTCTGTGTTCTGTCAGCTTGGTTGGGAATGCATATGAAGC
AGACTGAGCAACCCTACCAGACTCATTGCTTTGTGTAGCGGTCCTGGTGAAACTTTGGTCCTGTT
CGGTGGTGAGCGTAATCGTAAACTTGGCGAGGGAAATAATAATACGAGAGTGAAGATTGAAAAAG
TGTCATAATCGTTCAAGACGTAAGATGCAATCCAACAATCTTGCCAAGAGGTCACGCGAGCTGAC
CCCTTAGACCAATTCTTCCTGAAACCTTCTTTGGCTGCAAAAAGCGTTCTTACACAGGAAACGTC
ACAAGACTATGTATGATGAGCTGAATAAACAGTAAATACGGTAACCTTGTCTGTCAGGTTCTGTC
AGGGTAACCCTTGCCTTCAGGCCAACCCTTGTCTGTCAGTTGCCC
Found at i:19454 original size:26 final size:25
Alignment explanation
Indices: 19392--19479 Score: 85
Period size: 26 Copynumber: 3.5 Consensus size: 25
19382 CATCAACACC
19392 TCTACCACCATCTACTATCATAT-CCA
1 TCTACCA-CATCT-CTATCATATACCA
* *
19418 ACCACCAACATCTCTATCATGATACCA
1 TCTACC-ACATCTCTATCAT-ATACCA
19445 TCTACCACATCTC-ATCA-A-ACCA
1 TCTACCACATCTCTATCATATACCA
*
19467 TCTACCACGTCTC
1 TCTACCACATCTC
19480 CAACCACCAA
Statistics
Matches: 54, Mismatches: 5, Indels: 10
0.78 0.07 0.14
Matches are distributed among these distances:
22 16 0.30
23 1 0.02
25 11 0.20
26 18 0.33
27 8 0.15
ACGTcount: A:0.32, C:0.40, G:0.02, T:0.26
Consensus pattern (25 bp):
TCTACCACATCTCTATCATATACCA
Left flanking sequence: Indices 18892 -- 19391
ACACCGTAGTCACTGAAACGGGACGAGTGAATCGTTCGTTTTCAGGATGTAATCGGACACAAAGA
CAACCGTTTGGTATTCATGTGACCTAGCGTGTAAAGTTGGTCGATTACAAAGGCAATGTAGTTAT
CATCACAGCCAGATTGGAGAAATCACAGGATGACGAGATGACCAAGATGACACAATGAACAAGGT
GAGATGAGCAAGATGGCGAAGTAAACTAGATGACGACACGAGCAAGATGACAAATTGGACAAGGT
GACAAGACGAACAAGTTGTCAATAGACAAGATAATGAATTAACCAAAACAAGATAAAACTAGATT
ACTAGACAAACGAGATGAGAACAAGAGTAGTATACACACGGGTTTGACCACGACAAACACAATGA
ACAAGATGATAAAATGAGACCGGTATCCCGACTGCCCCAAAAATGAGTGAATCTCGCAATCGTAA
GAACTCTAACACTGATTTACCATGAACACCTCAAGCATCAACACC
Right flanking sequence: Indices 19480 -- 19979
CAACCACCAACACCTCTACCATTAAACCATCTTCCTCGCTCACCACCTCTACTTTCTACCATTAC
ATTATAATACAAACCCTCACCGGTTCCGACGGAACCGCAACTTCACCATAAACGTACCCCGGTTG
TGGTCAAAGTGGTACCGCACGGCGTCCGCAGCCAACGGAGGGCTATAGTCAGGGTTGCGGATCTG
CGTCTTGTTCACATACACCTCGGTGTAGTCGTACACCCCGGGCACCCCCAAGTCCACCGCACCGG
GAAGCACCAGCGACGGAGCAGGCGTTCGGAACGTCTTGGGCACATCGGAAAGGTCGGGCGCCAGC
AGCGCTCCCCGGTTCAGGTGGAAGTTGACCCGTCGCAGCGTACCCCGCAGCAGCGCCAGCGGAGT
GCCCACCATTGCCGCGAGGTGGTCCTCGTTCAAGTTGTGTCTCCGCTTGCGTCTCAGGTCGCGCT
CGATCTCCTTGTCGAGCTTGTCGATGTCCTGGTGCGAGAGCTTCT
Found at i:22256 original size:21 final size:21
Alignment explanation
Indices: 22231--22278 Score: 78
Period size: 21 Copynumber: 2.3 Consensus size: 21
22221 GCCTCGCTTT
* *
22231 TCTCACCATCAATACTCAATC
1 TCTCACCATCAACACCCAATC
22252 TCTCACCATCAACACCCAATC
1 TCTCACCATCAACACCCAATC
22273 TCTCAC
1 TCTCAC
22279 AATGGCACAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.31, C:0.44, G:0.00, T:0.25
Consensus pattern (21 bp):
TCTCACCATCAACACCCAATC
Left flanking sequence: Indices 21731 -- 22230
CGGATAGACGTTTACGATGAGGCCTTGTTTGCTTGAGCTTTGTGTCCTGCATATAGCCTGGGTGG
GCTGGATAGCCAGTATCAGAATGACAGTGGTCGAACAAGCCAGAGGTGAACACAATTCCAGTGCA
GGCAGGGTCTTTTAAATAAGGCAGGTAATTATCATTTCAGTGTCCTTGTGGAGTACCATTAACAA
TGTAGCTACGAGTTTTCAGAATAGGTAATTGTGACTATTTGTAATTAAGATTAACCTTGAAGAAT
CCATAATCTCCAAAGTGTCGCTTCCTTACTAGTTTGGCTTTGCAATGCACTCGCTTCAATGGTGC
TAATGTTCCAAACCAGAAACAAGTAACGTTAGTTGAGGTTTGAGAGTACCTGGCCGTCCTGTTGG
TAGTTGAGCTTCTGAAAAGGTTAGGGCAACACGCAAAACTGACCACATCACCGCCAATTGCCACT
AACAACTCCGTACCCTACTCTTCCCTTACTCAATCGCCTCGCTTT
Right flanking sequence: Indices 22279 -- 22778
AATGGCACAATACCAAAATCAACACAACCCCTCAACACAACCCTCAAAAACCCTCAACAACCTCA
ACTACAACTACACCGGACTGGACAGCCTGTCTCCATTCTATAGTACATATGATACACGCAGACCT
ACGCCTGCACACTCGAGTAGTGCAACACAAACTCCTTTTTGATCTTGGTCCAGTTGTGCGGGTCA
AAAAAGATGTACACCCCGCGCTCGACATCGGGCAGGATCAACACCGGCTCCACCTGCGAGTCCTT
GGTGAGCCACACCTGGATGTCCTTGTGGTAGCGCCAGTTGCGCAGCACAAGCTCGCGGGCAGCGT
ACTCCTGGAGGGTGTCCCGCGGCTTCATGTAGAAAATGTAGAAAAGCGTCTCGTCACTGAAGCTC
TGGATCTTGACGTCACACGGCCCGGGTGGCGGCACGATGCTCAGCGGGTGGATCGCCTTTGGTAG
GGTAAAGTAGGGCTCGACGTCCAGCCGCAGGGTCTCCACCCACGG
Found at i:22315 original size:13 final size:12
Alignment explanation
Indices: 22297--22337 Score: 59
Period size: 10 Copynumber: 3.5 Consensus size: 12
22287 AATACCAAAA
22297 TCAACACAACCCC
1 TCAACACAA-CCC
22310 TCAACACAACCC
1 TCAACACAACCC
22322 TCAA-A-AACCC
1 TCAACACAACCC
22332 TCAACA
1 TCAACA
22338 ACCTCAACTA
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
10 9 0.33
11 2 0.07
12 7 0.26
13 9 0.33
ACGTcount: A:0.44, C:0.46, G:0.00, T:0.10
Consensus pattern (12 bp):
TCAACACAACCC
Left flanking sequence: Indices 21797 -- 22296
CTGGATAGCCAGTATCAGAATGACAGTGGTCGAACAAGCCAGAGGTGAACACAATTCCAGTGCAG
GCAGGGTCTTTTAAATAAGGCAGGTAATTATCATTTCAGTGTCCTTGTGGAGTACCATTAACAAT
GTAGCTACGAGTTTTCAGAATAGGTAATTGTGACTATTTGTAATTAAGATTAACCTTGAAGAATC
CATAATCTCCAAAGTGTCGCTTCCTTACTAGTTTGGCTTTGCAATGCACTCGCTTCAATGGTGCT
AATGTTCCAAACCAGAAACAAGTAACGTTAGTTGAGGTTTGAGAGTACCTGGCCGTCCTGTTGGT
AGTTGAGCTTCTGAAAAGGTTAGGGCAACACGCAAAACTGACCACATCACCGCCAATTGCCACTA
ACAACTCCGTACCCTACTCTTCCCTTACTCAATCGCCTCGCTTTTCTCACCATCAATACTCAATC
TCTCACCATCAACACCCAATCTCTCACAATGGCACAATACCAAAA
Right flanking sequence: Indices 22338 -- 22837
ACCTCAACTACAACTACACCGGACTGGACAGCCTGTCTCCATTCTATAGTACATATGATACACGC
AGACCTACGCCTGCACACTCGAGTAGTGCAACACAAACTCCTTTTTGATCTTGGTCCAGTTGTGC
GGGTCAAAAAAGATGTACACCCCGCGCTCGACATCGGGCAGGATCAACACCGGCTCCACCTGCGA
GTCCTTGGTGAGCCACACCTGGATGTCCTTGTGGTAGCGCCAGTTGCGCAGCACAAGCTCGCGGG
CAGCGTACTCCTGGAGGGTGTCCCGCGGCTTCATGTAGAAAATGTAGAAAAGCGTCTCGTCACTG
AAGCTCTGGATCTTGACGTCACACGGCCCGGGTGGCGGCACGATGCTCAGCGGGTGGATCGCCTT
TGGTAGGGTAAAGTAGGGCTCGACGTCCAGCCGCAGGGTCTCCACCCACGGCAGCGCCAACGTCT
TGAGCACCGAGGTGCCCTCGCTCAAGTCGAGCCCAAAGTTGACCA
Found at i:23179 original size:9 final size:9
Alignment explanation
Indices: 23159--23191 Score: 57
Period size: 9 Copynumber: 3.6 Consensus size: 9
23149 GTTTTGGCTC
23159 GGTTTAGTGG
1 GGTTT-GTGG
23169 GGTTTGTGG
1 GGTTTGTGG
23178 GGTTTGTGG
1 GGTTTGTGG
23187 GGTTT
1 GGTTT
23192 TAGTTGGGCT
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
9 18 0.78
10 5 0.22
ACGTcount: A:0.03, C:0.00, G:0.52, T:0.45
Consensus pattern (9 bp):
GGTTTGTGG
Left flanking sequence: Indices 22659 -- 23158
ACTGAAGCTCTGGATCTTGACGTCACACGGCCCGGGTGGCGGCACGATGCTCAGCGGGTGGATCG
CCTTTGGTAGGGTAAAGTAGGGCTCGACGTCCAGCCGCAGGGTCTCCACCCACGGCAGCGCCAAC
GTCTTGAGCACCGAGGTGCCCTCGCTCAAGTCGAGCCCAAAGTTGACCACTTCCAGCCCAAGGGC
AAACATCGTGGTGTCATTTTGTTCCATTTTGAGAAGCGACGCGAGCCCGTCCATCCCGTACTGGG
TGTTGGGCCCAGATGCGGGGGCAGAGTCGTTCTGTGGGTCGGTCTGTGGGTGCTGGGAGCCGTCG
GGCGCCTGCTGGAGGCCCGGGGGAAGCACTGACATTGGGGGGATACGAGGTGGTTGGTGGTGGAC
GTTTTGTTCGCGTGCGGCTTGGTGGGGAACGATGGAAGGTGGGGCTGGCGAGAGAGGAGCTACGG
TGGTTTGAGTTTGGTTTATCGTTGGTGAAAGAGTGGTTTTGGCTC
Right flanking sequence: Indices 23192 -- 23691
TAGTTGGGCTAGCATGCTGGTTGGCTTGCACTGCCTGGGAAAAATAGATTGAAAAATCGTATGAG
GCTGGTGGTGGTGGAAGGGGAAAGGTGGGGGGTTTTGGGTTTTGAATGTTGGGTGTTGGAGTGGT
CTTTGAGGTTACGTAGTTGTCGCTGGGTAAGAGAGAAAGCTTTTGATGGCTCAATTGATAGAATA
GGTCAGTTTGACCAGAACGTAGACGCTAACGTGTAAATTAGTGAGGTTCAAAGACGGTCTCTAAG
TAGACGCTGAAAAGCATGTCCGGGCGAGGATCCCGCCAACTCTCACGTCATTCTCCATCCCCTAT
ACCAAAGTGTCGGTGATTTCCCCTCCCACTTACGAAACAACCAGCCCGGAAACGCCCTAGACTAC
CAACCCCACCGGGCGAGTGAACAAAGAATGATGCAAAAAATAACGGGTGACAGAAGAGCCGGCGT
TGACAACCGATCTGGCTACTTTTAGCCCAACAATCTGCGCAATTG
Found at i:25365 original size:25 final size:26
Alignment explanation
Indices: 25295--25381 Score: 140
Period size: 27 Copynumber: 3.3 Consensus size: 26
25285 CTTCCCCGTG
25295 CCCCACTAAGTTCTCCGTCGTTCTCTT
1 CCCCACT-AGTTCTCCGTCGTTCTCTT
25322 CCCCACTACGTTCTCCGTCGTTCTCTT
1 CCCCACTA-GTTCTCCGTCGTTCTCTT
25349 CCCCACT-GTTCTCCGTCGTTTCTCTT
1 CCCCACTAGTTCTCCGTCG-TTCTCTT
25375 CCCCACT
1 CCCCACT
25382 CCTTCCCCTC
Statistics
Matches: 58, Mismatches: 0, Indels: 5
0.92 0.00 0.08
Matches are distributed among these distances:
25 11 0.19
26 15 0.26
27 32 0.55
ACGTcount: A:0.08, C:0.45, G:0.10, T:0.37
Consensus pattern (26 bp):
CCCCACTAGTTCTCCGTCGTTCTCTT
Left flanking sequence: Indices 24795 -- 25294
AGAAGCGCAACTACAACGAGGTCAAGATCCAGGAGAACATTGACTGTGAGATCATGGAGGTGATT
GCCCAGGAGGCCCGCGACTCGTACGTGCCCGAAATCGTCATCGAGCTTACCCTGAACAATGCCGA
TGAGATGGACGACAACGTCGACAGAATCTGTCAGTGGGTCGCCCAGTGGATTGGTGAGCACCCCG
AGGGTGTTACCAACGAGCTCCAGCCCCGGGATGACGACGACGATGACGACGAAGAGTAGGTTATA
GAATACACACTAATGGTTTGAACACCTATGGTTTGAGTACGTAGCCAGGTCGAATTTGTTGGGTT
TCCCCCTCGCGGCTGGCTATTGTAGAGTATTGTTTACCTGGGGTATAGCCCCCTTGTTTTGCTGA
TGTGCTATTTATAATGGTGGGTCGTTCCCTTCTTACGCGTCTCTCACCCTATTACATTCCCCTCT
TCTCACTACACCTGCTTCCATTCCCGTCTTCCCGTCTTCCCCGTG
Right flanking sequence: Indices 25382 -- 25881
CCTTCCCCTCCTGACTCATCGCAAACCCTGTGTGGTAACAATGGCGGATATGCTGGTCACTGTCT
CAGGTTGAAATGCGAAAGCTTCCCCTCCAACCTCGTCAAGGCATGGAAAAAATAATCGTCAACAC
CACCCTATTGTCTGTGACCAGGCCTATTAATAGTATGGACAGCCAATCTCGCTAGTTGGGTGGTC
AACCACCTCGGAAAAGCTCACCGTGAACTCCGAAGCAGACACTTCCACCGCGATAACACCACAGA
ACAATAGCAGACAATCCAAGCAATCGAGACAACAATCCCACAACAATCCATCCACAGTCACACAA
TTAAGCTAATTTAGACAATTCCACCCCATTCCATCACCAGTTCCAAACCAATATTTTATTAAGAA
GTCAATTCTATATGCAAAGGGGAGTCCCCGGGTATGATTAAAAGAGGCCAACCACCACCTTCCGG
AGGTAGAGGAAGACCACAAACACCAACAGCGTCAACACCACGTAG
Found at i:31936 original size:9 final size:9
Alignment explanation
Indices: 31909--32028 Score: 99
Period size: 9 Copynumber: 14.9 Consensus size: 9
31899 ACACAAACAC
31909 CTCACCA-A
1 CTCACCACA
*
31917 CCCACCCACA
1 CTCA-CCACA
31927 CTCACCACA
1 CTCACCACA
31936 CTCACCACA
1 CTCACCACA
31945 CTCA-C-CA
1 CTCACCACA
31952 CTCACCACA
1 CTCACCACA
31961 -T-A-C-CA
1 CTCACCACA
31966 CTCACCACA
1 CTCACCACA
31975 --CACCACA
1 CTCACCACA
*
31982 --CACTACA
1 CTCACCACA
31989 CTCACCACA
1 CTCACCACA
*
31998 --CACTACA
1 CTCACCACA
32005 CTCACCACA
1 CTCACCACA
32014 --CACCACA
1 CTCACCACA
32021 CTCACCAC
1 CTCACCAC
32029 CCCCACCCCC
Statistics
Matches: 92, Mismatches: 6, Indels: 27
0.74 0.05 0.22
Matches are distributed among these distances:
5 2 0.02
6 2 0.02
7 34 0.37
8 7 0.08
9 43 0.47
10 4 0.04
ACGTcount: A:0.35, C:0.55, G:0.00, T:0.10
Consensus pattern (9 bp):
CTCACCACA
Left flanking sequence: Indices 31409 -- 31908
GCTTTACCAACTTTTCTGGAAAACCTCAAAAGTTGTGAAAATTTCAACGCAGATGGTGAACACAT
CTAAAAGCCAACCTAGATAACATATGGTCCACCGCTTCTCTTTGATTCCACCCACTCTGCACGTT
TTCGAAACCACATCCATGGATATAACCGCCACTTACATGCAGTACACAACACCATTCTGGCACAA
CCGAACCATGAGGAGCTACTGCCTTCGTGAACCGTCGATTCGCTGGCTGTGGGCACTCTCCCGCC
CACTCTCTGCTACTACACTCATTTCCAGTCTCTCGATCCCGACGCCAAGAACATTTTTCACCACC
ACCACCAGACACAAGAAAGACACCTCTCAACCCCAAAACTCTACGCTAGCAGGCACACAAAACAC
TACGAATCAACCCCGCCACCCCCACCACCTCCGCACCACTACTTCCACCCCGTTAGACCCGCCAA
AATGCCCTCAATTCTGCATCTATTGCGGTCTCCCCACACAAACAC
Right flanking sequence: Indices 32029 -- 32528
CCCCACCCCCATCTCCCCATCTCTCACTCGCCTCCACGCTGTGCCTCGTTGCGCGGAAAATGCGC
GCCAACTGGCATTTACCCGATCAACAAAGGCCCTTTACCCACAACACGACGATGCCTCCCACGAC
ATTAGCTTCGATTCCAGAGTAAGTACCCCGCCCACCGGGCCCACCCAGTGCGGGCGAACCCAGTG
GTGTGCTCGGATCCGCGCCCCACCCGCCATTCGCGCCACCAGCCCGCCTGGACTCCCACCGGACA
CCGTGGACCCCACACCCACCCCACGCCCACGCCACCACCCACCCGCCAGCCAACACGTATACTAA
CATCCAGAGCAAAGGAGGAGTACCCCGGCGCGTGCCTCATCGAGCGCACACTGCGGATGCCCGGG
TTTGTCGACCTCGGCCCGGCCGACCTCTGCAACATCCAGAAAGTCAGTGCCCACTCCAAGTCCCA
CAAAGAACTCGGCACGTTTCTCTACTACACGGGGATCGACACCCT
Found at i:31955 original size:16 final size:16
Alignment explanation
Indices: 31922--32028 Score: 132
Period size: 16 Copynumber: 6.8 Consensus size: 16
31912 ACCAACCCAC
31922 CCACACTCACCACACTCA
1 CCACACTCACCACA--CA
*
31940 CCACACTCACCACTCA
1 CCACACTCACCACACA
*
31956 CCACA-T-ACCACTCA
1 CCACACTCACCACACA
31970 CCACA--CACCACACA
1 CCACACTCACCACACA
*
31984 CTACACTCACCACACA
1 CCACACTCACCACACA
*
32000 CTACACTCACCACACA
1 CCACACTCACCACACA
32016 CCACACTCACCAC
1 CCACACTCACCAC
32029 CCCCACCCCC
Statistics
Matches: 82, Mismatches: 4, Indels: 8
0.87 0.04 0.09
Matches are distributed among these distances:
14 24 0.29
15 1 0.01
16 44 0.54
18 13 0.16
ACGTcount: A:0.36, C:0.54, G:0.00, T:0.10
Consensus pattern (16 bp):
CCACACTCACCACACA
Left flanking sequence: Indices 31422 -- 31921
TTCTGGAAAACCTCAAAAGTTGTGAAAATTTCAACGCAGATGGTGAACACATCTAAAAGCCAACC
TAGATAACATATGGTCCACCGCTTCTCTTTGATTCCACCCACTCTGCACGTTTTCGAAACCACAT
CCATGGATATAACCGCCACTTACATGCAGTACACAACACCATTCTGGCACAACCGAACCATGAGG
AGCTACTGCCTTCGTGAACCGTCGATTCGCTGGCTGTGGGCACTCTCCCGCCCACTCTCTGCTAC
TACACTCATTTCCAGTCTCTCGATCCCGACGCCAAGAACATTTTTCACCACCACCACCAGACACA
AGAAAGACACCTCTCAACCCCAAAACTCTACGCTAGCAGGCACACAAAACACTACGAATCAACCC
CGCCACCCCCACCACCTCCGCACCACTACTTCCACCCCGTTAGACCCGCCAAAATGCCCTCAATT
CTGCATCTATTGCGGTCTCCCCACACAAACACCTCACCAACCCAC
Right flanking sequence: Indices 32029 -- 32528
CCCCACCCCCATCTCCCCATCTCTCACTCGCCTCCACGCTGTGCCTCGTTGCGCGGAAAATGCGC
GCCAACTGGCATTTACCCGATCAACAAAGGCCCTTTACCCACAACACGACGATGCCTCCCACGAC
ATTAGCTTCGATTCCAGAGTAAGTACCCCGCCCACCGGGCCCACCCAGTGCGGGCGAACCCAGTG
GTGTGCTCGGATCCGCGCCCCACCCGCCATTCGCGCCACCAGCCCGCCTGGACTCCCACCGGACA
CCGTGGACCCCACACCCACCCCACGCCCACGCCACCACCCACCCGCCAGCCAACACGTATACTAA
CATCCAGAGCAAAGGAGGAGTACCCCGGCGCGTGCCTCATCGAGCGCACACTGCGGATGCCCGGG
TTTGTCGACCTCGGCCCGGCCGACCTCTGCAACATCCAGAAAGTCAGTGCCCACTCCAAGTCCCA
CAAAGAACTCGGCACGTTTCTCTACTACACGGGGATCGACACCCT
Found at i:31983 original size:23 final size:21
Alignment explanation
Indices: 31938--32021 Score: 69
Period size: 23 Copynumber: 3.7 Consensus size: 21
31928 TCACCACACT
*
31938 CACCACACTCACCACTCACCACA
1 CACCACA--CACCACACACCACA
* *
31961 TACCACTCACCACACACCACA
1 CACCACACACCACACACCACA
* *
31982 CACTACACTCACCACACACTACACT
1 CAC--CACACACCACACAC--CACA
32007 CACCACACACCACAC
1 CACCACACACCACAC
32022 TCACCACCCC
Statistics
Matches: 51, Mismatches: 6, Indels: 8
0.78 0.09 0.12
Matches are distributed among these distances:
21 15 0.29
23 30 0.59
25 6 0.12
ACGTcount: A:0.37, C:0.54, G:0.00, T:0.10
Consensus pattern (21 bp):
CACCACACACCACACACCACA
Left flanking sequence: Indices 31438 -- 31937
AAGTTGTGAAAATTTCAACGCAGATGGTGAACACATCTAAAAGCCAACCTAGATAACATATGGTC
CACCGCTTCTCTTTGATTCCACCCACTCTGCACGTTTTCGAAACCACATCCATGGATATAACCGC
CACTTACATGCAGTACACAACACCATTCTGGCACAACCGAACCATGAGGAGCTACTGCCTTCGTG
AACCGTCGATTCGCTGGCTGTGGGCACTCTCCCGCCCACTCTCTGCTACTACACTCATTTCCAGT
CTCTCGATCCCGACGCCAAGAACATTTTTCACCACCACCACCAGACACAAGAAAGACACCTCTCA
ACCCCAAAACTCTACGCTAGCAGGCACACAAAACACTACGAATCAACCCCGCCACCCCCACCACC
TCCGCACCACTACTTCCACCCCGTTAGACCCGCCAAAATGCCCTCAATTCTGCATCTATTGCGGT
CTCCCCACACAAACACCTCACCAACCCACCCACACTCACCACACT
Right flanking sequence: Indices 32022 -- 32521
TCACCACCCCCACCCCCATCTCCCCATCTCTCACTCGCCTCCACGCTGTGCCTCGTTGCGCGGAA
AATGCGCGCCAACTGGCATTTACCCGATCAACAAAGGCCCTTTACCCACAACACGACGATGCCTC
CCACGACATTAGCTTCGATTCCAGAGTAAGTACCCCGCCCACCGGGCCCACCCAGTGCGGGCGAA
CCCAGTGGTGTGCTCGGATCCGCGCCCCACCCGCCATTCGCGCCACCAGCCCGCCTGGACTCCCA
CCGGACACCGTGGACCCCACACCCACCCCACGCCCACGCCACCACCCACCCGCCAGCCAACACGT
ATACTAACATCCAGAGCAAAGGAGGAGTACCCCGGCGCGTGCCTCATCGAGCGCACACTGCGGAT
GCCCGGGTTTGTCGACCTCGGCCCGGCCGACCTCTGCAACATCCAGAAAGTCAGTGCCCACTCCA
AGTCCCACAAAGAACTCGGCACGTTTCTCTACTACACGGGGATCG
Found at i:32020 original size:7 final size:7
Alignment explanation
Indices: 31947--32021 Score: 69
Period size: 7 Copynumber: 10.1 Consensus size: 7
31937 TCACCACACT
*
31947 CACCACT
1 CACCACA
31954 CACCACA
1 CACCACA
* *
31961 TACCACT
1 CACCACA
31968 CACCACA
1 CACCACA
31975 CACCACA
1 CACCACA
*
31982 CACTACACT
1 CAC--CACA
31991 CACCACA
1 CACCACA
*
31998 CACTACACT
1 CAC--CACA
32007 CACCACA
1 CACCACA
32014 CACCACA
1 CACCACA
32021 C
1 C
32022 TCACCACCCC
Statistics
Matches: 55, Mismatches: 9, Indels: 8
0.76 0.12 0.11
Matches are distributed among these distances:
7 43 0.78
9 12 0.22
ACGTcount: A:0.37, C:0.53, G:0.00, T:0.09
Consensus pattern (7 bp):
CACCACA
Left flanking sequence: Indices 31447 -- 31946
AAATTTCAACGCAGATGGTGAACACATCTAAAAGCCAACCTAGATAACATATGGTCCACCGCTTC
TCTTTGATTCCACCCACTCTGCACGTTTTCGAAACCACATCCATGGATATAACCGCCACTTACAT
GCAGTACACAACACCATTCTGGCACAACCGAACCATGAGGAGCTACTGCCTTCGTGAACCGTCGA
TTCGCTGGCTGTGGGCACTCTCCCGCCCACTCTCTGCTACTACACTCATTTCCAGTCTCTCGATC
CCGACGCCAAGAACATTTTTCACCACCACCACCAGACACAAGAAAGACACCTCTCAACCCCAAAA
CTCTACGCTAGCAGGCACACAAAACACTACGAATCAACCCCGCCACCCCCACCACCTCCGCACCA
CTACTTCCACCCCGTTAGACCCGCCAAAATGCCCTCAATTCTGCATCTATTGCGGTCTCCCCACA
CAAACACCTCACCAACCCACCCACACTCACCACACTCACCACACT
Right flanking sequence: Indices 32022 -- 32521
TCACCACCCCCACCCCCATCTCCCCATCTCTCACTCGCCTCCACGCTGTGCCTCGTTGCGCGGAA
AATGCGCGCCAACTGGCATTTACCCGATCAACAAAGGCCCTTTACCCACAACACGACGATGCCTC
CCACGACATTAGCTTCGATTCCAGAGTAAGTACCCCGCCCACCGGGCCCACCCAGTGCGGGCGAA
CCCAGTGGTGTGCTCGGATCCGCGCCCCACCCGCCATTCGCGCCACCAGCCCGCCTGGACTCCCA
CCGGACACCGTGGACCCCACACCCACCCCACGCCCACGCCACCACCCACCCGCCAGCCAACACGT
ATACTAACATCCAGAGCAAAGGAGGAGTACCCCGGCGCGTGCCTCATCGAGCGCACACTGCGGAT
GCCCGGGTTTGTCGACCTCGGCCCGGCCGACCTCTGCAACATCCAGAAAGTCAGTGCCCACTCCA
AGTCCCACAAAGAACTCGGCACGTTTCTCTACTACACGGGGATCG
Found at i:34573 original size:25 final size:24
Alignment explanation
Indices: 34534--34585 Score: 77
Period size: 25 Copynumber: 2.1 Consensus size: 24
34524 GAGTGGAAGT
*
34534 AGATTGAGAGGGGAGAGTAGGTGG
1 AGATTGAGAGGGGAGAGTAGGCGG
*
34558 AGATTGGAGAGTGGAGAGTAGGCGG
1 AGATT-GAGAGGGGAGAGTAGGCGG
34583 AGA
1 AGA
34586 GTAGTTGTGA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
24 5 0.20
25 20 0.80
ACGTcount: A:0.31, C:0.02, G:0.52, T:0.15
Consensus pattern (24 bp):
AGATTGAGAGGGGAGAGTAGGCGG
Left flanking sequence: Indices 34034 -- 34533
GGCTCAAGCACTACAAGGAGGGGCTGGTGGCGTTTGCGGCGGCGCTCCAGCTGCGGTTCTCGCTG
AAGGCCCAGGGCGAGTTGTGCAAGTACTACCAGATGGAGCGGGCCAAGATGGTGCAGCGCAACTC
GGGCACGGGGCTGGCGCCGCAGAACTACGCCAAGGCCAACACCACGCTTCTGGAGAAGATCTTGG
AGCTGGTGGTCAAGTTGTTGGTGTGGAACCACCGGTGGTACCTGGAGTTTTCCCCGGCGTTGACG
GCGACGCTTGGCGACTTGATTGCCACCGAGGGGCTCATCAAGATCAACCTGATGGTGCAGGCGTT
GTACCTGGAGGTGCCGGTGCCCCACCAGGACAAGGGCGACCACATTCCCAACCGGGGCATCACCG
CGATGATGGACGAGGTGTTTGAGTTTTACCGGCGGTACAAGACGGCGGGTGCCGACAACTAGTGT
AATATAATAGAAGCGAGAAGGAGTGGGTAGGAGGAGAGTGGAAGT
Right flanking sequence: Indices 34586 -- 35085
GTAGTTGTGATTAGGTGGGGTGGAGTAGATTGCGTGGGTGTTGGTGGAGTAGGTTGGGTGGGTGT
TGGTGGAGTAGGTTGGATGGGTGTTGGTGGAGTAGAGAAAGAGTGTTGGTAGAGTAGAGAGGGGT
GGAGTGTTGGTAGAGAGTAGGTTGGGTGAGTGTGTTGGCAGAGAAGCGTTTGTTGGGTGGTGCAT
TGATAGAGAAGCTTAGTTAAGTGGAGTGTTGGTAGAGTAGAGAGTCGATTGGGTGGAGTGATTGG
AACTGGAAGAAGAGCAAGTATCGGTGAGAAATTACCACAGCTGACCATACCTCTGCAGCGCCCAT
CACACTGTTCTGGACTGAAATTGCAACCAAAAGCAAGCATAATCAGCTTACACTTCCTAACTCGT
AGAATAAACTTTGGTAACCAAAGACGGAAGAAAGAAAATAGAGAGAAAAACACTATAGAGAGAAA
AACGCTCCGGTCCTGCTGTCCGCTTCTGCTAAACCACCGTTCCGC
Found at i:34631 original size:24 final size:23
Alignment explanation
Indices: 34604--34686 Score: 121
Period size: 24 Copynumber: 3.5 Consensus size: 23
34594 GATTAGGTGG
34604 GGTGGAGTAGATTGCGTGGGTGTT
1 GGTGGAGTAGATTG-GTGGGTGTT
*
34628 GGTGGAGTAGGTTGGGTGGGTGTT
1 GGTGGAGTAGATT-GGTGGGTGTT
*
34652 GGTGGAGTAGGTTGGATGGGTGTT
1 GGTGGAGTAGATTGG-TGGGTGTT
34676 GGTGGAGTAGA
1 GGTGGAGTAGA
34687 GAAAGAGTGT
Statistics
Matches: 55, Mismatches: 2, Indels: 4
0.90 0.03 0.07
Matches are distributed among these distances:
23 2 0.04
24 52 0.95
25 1 0.02
ACGTcount: A:0.13, C:0.01, G:0.54, T:0.31
Consensus pattern (23 bp):
GGTGGAGTAGATTGGTGGGTGTT
Left flanking sequence: Indices 34104 -- 34603
CCAGGGCGAGTTGTGCAAGTACTACCAGATGGAGCGGGCCAAGATGGTGCAGCGCAACTCGGGCA
CGGGGCTGGCGCCGCAGAACTACGCCAAGGCCAACACCACGCTTCTGGAGAAGATCTTGGAGCTG
GTGGTCAAGTTGTTGGTGTGGAACCACCGGTGGTACCTGGAGTTTTCCCCGGCGTTGACGGCGAC
GCTTGGCGACTTGATTGCCACCGAGGGGCTCATCAAGATCAACCTGATGGTGCAGGCGTTGTACC
TGGAGGTGCCGGTGCCCCACCAGGACAAGGGCGACCACATTCCCAACCGGGGCATCACCGCGATG
ATGGACGAGGTGTTTGAGTTTTACCGGCGGTACAAGACGGCGGGTGCCGACAACTAGTGTAATAT
AATAGAAGCGAGAAGGAGTGGGTAGGAGGAGAGTGGAAGTAGATTGAGAGGGGAGAGTAGGTGGA
GATTGGAGAGTGGAGAGTAGGCGGAGAGTAGTTGTGATTAGGTGG
Right flanking sequence: Indices 34687 -- 35186
GAAAGAGTGTTGGTAGAGTAGAGAGGGGTGGAGTGTTGGTAGAGAGTAGGTTGGGTGAGTGTGTT
GGCAGAGAAGCGTTTGTTGGGTGGTGCATTGATAGAGAAGCTTAGTTAAGTGGAGTGTTGGTAGA
GTAGAGAGTCGATTGGGTGGAGTGATTGGAACTGGAAGAAGAGCAAGTATCGGTGAGAAATTACC
ACAGCTGACCATACCTCTGCAGCGCCCATCACACTGTTCTGGACTGAAATTGCAACCAAAAGCAA
GCATAATCAGCTTACACTTCCTAACTCGTAGAATAAACTTTGGTAACCAAAGACGGAAGAAAGAA
AATAGAGAGAAAAACACTATAGAGAGAAAAACGCTCCGGTCCTGCTGTCCGCTTCTGCTAAACCA
CCGTTCCGCAACTCCCGCTCGCCCCGTCTCGCCCCATCTCGCTTCCCTTGGTCCGTTTCACCATA
GCCCAAAGTGGTACGTTTGACAGCCTTGCAAAAAAAAAGCAATGT
Found at i:37166 original size:3 final size:3
Alignment explanation
Indices: 37152--37201 Score: 64
Period size: 3 Copynumber: 16.7 Consensus size: 3
37142 GATCAAAAGG
* * * *
37152 AGA AGG AGA AGA AGA AGA AGG AGA AGA AGA AGA AGA AGT AGA AGA CGA
1 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA
37200 AG
1 AG
37202 TAAAGTAGAA
Statistics
Matches: 39, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
3 39 1.00
ACGTcount: A:0.58, C:0.02, G:0.38, T:0.02
Consensus pattern (3 bp):
AGA
Left flanking sequence: Indices 36652 -- 37151
GTTGGTCACCGCGTACAACGTGCTGTTGGACCAGCTCATTGGCGACGCCACCATCGACCCCTTGA
CCAAGATCCCCCGCGGGATGATGAAGCGGTTCGCGGTCCACAAGCAAGTGGCCCAGGCGCTTCGG
GCCGAGTTGTTGCGCCCCCAGTACGGCTTGCAGCTGGTGTGCCGCAACCAGAGCGAGTGCTGCCA
CGGGATGACCGCGTTGTACGTGCCCGAGCTGTTGGCGGCCGGGCAGGTTGTGGGGTACATGCAGT
CCAAGTACGACATCACCATTGCTGGTGGCATCCACCCCAAGTGCCCCACGCGCTACATCAGAATC
GGGCACATGGGTGTGTCTGTGACCGACCAGGGTGCTGCTGACGTCAAGCGCACCGCCGCGGCCCT
TGCGGTGACCCTCAAGGCGTTGCAATCGTCGAAGTTTTAGGCATCGTAGCAGCTATCAACCGGAG
CCCTGCTCCACCCATCACGACATAGGACAATAATAGATCAAAAGG
Right flanking sequence: Indices 37202 -- 37701
TAAAGTAGAAAACTGTGGTTCACTGAGAAAAGAAGAAGTTGAAGAGTAGAAGACTCTGGTTTAGA
GCGGTCATTTGGGTTCACCGTGAAGCCCTGATCGTAGGTGTGAATGAAACCATAGATGGAGACCC
TGCTTTTAAAGTTGAGCCCACACCATTTGAACCCGATTCGAATCCCATTTTGGTAGCATTGCCAA
GCCTGGATTGGGTTAATAAGCGGGAGTGGCATTCTGGAGAAATGCACTGAGATCAGATCTAGCGT
GAGCTGGAATGCCAGTTTGTCGCCCAATTGGATGAAACTAGACCATTGAAGTGGTCCTTCTCTCG
TCTAAGACACTTTAAAAGCTGGGTACAGCATCACGATGAACCTCCATCATCCGCAAATCACCAAT
CATTCGATTGAACCCGCCGGCCCCGCTTGCTCGCGCTGGATCACTCCTCGTCTTTGTTGTGGGTC
TAGACCGATCCACACCCACACCCACACAAACCACCCACACACCCT
Found at i:37172 original size:15 final size:15
Alignment explanation
Indices: 37152--37201 Score: 73
Period size: 15 Copynumber: 3.3 Consensus size: 15
37142 GATCAAAAGG
37152 AGAAGGAGAAGAAGA
1 AGAAGGAGAAGAAGA
37167 AGAAGGAGAAGAAGA
1 AGAAGGAGAAGAAGA
* *
37182 AGAAGAAGTAGAAGA
1 AGAAGGAGAAGAAGA
*
37197 CGAAG
1 AGAAG
37202 TAAAGTAGAA
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
15 32 1.00
ACGTcount: A:0.58, C:0.02, G:0.38, T:0.02
Consensus pattern (15 bp):
AGAAGGAGAAGAAGA
Left flanking sequence: Indices 36652 -- 37151
GTTGGTCACCGCGTACAACGTGCTGTTGGACCAGCTCATTGGCGACGCCACCATCGACCCCTTGA
CCAAGATCCCCCGCGGGATGATGAAGCGGTTCGCGGTCCACAAGCAAGTGGCCCAGGCGCTTCGG
GCCGAGTTGTTGCGCCCCCAGTACGGCTTGCAGCTGGTGTGCCGCAACCAGAGCGAGTGCTGCCA
CGGGATGACCGCGTTGTACGTGCCCGAGCTGTTGGCGGCCGGGCAGGTTGTGGGGTACATGCAGT
CCAAGTACGACATCACCATTGCTGGTGGCATCCACCCCAAGTGCCCCACGCGCTACATCAGAATC
GGGCACATGGGTGTGTCTGTGACCGACCAGGGTGCTGCTGACGTCAAGCGCACCGCCGCGGCCCT
TGCGGTGACCCTCAAGGCGTTGCAATCGTCGAAGTTTTAGGCATCGTAGCAGCTATCAACCGGAG
CCCTGCTCCACCCATCACGACATAGGACAATAATAGATCAAAAGG
Right flanking sequence: Indices 37202 -- 37701
TAAAGTAGAAAACTGTGGTTCACTGAGAAAAGAAGAAGTTGAAGAGTAGAAGACTCTGGTTTAGA
GCGGTCATTTGGGTTCACCGTGAAGCCCTGATCGTAGGTGTGAATGAAACCATAGATGGAGACCC
TGCTTTTAAAGTTGAGCCCACACCATTTGAACCCGATTCGAATCCCATTTTGGTAGCATTGCCAA
GCCTGGATTGGGTTAATAAGCGGGAGTGGCATTCTGGAGAAATGCACTGAGATCAGATCTAGCGT
GAGCTGGAATGCCAGTTTGTCGCCCAATTGGATGAAACTAGACCATTGAAGTGGTCCTTCTCTCG
TCTAAGACACTTTAAAAGCTGGGTACAGCATCACGATGAACCTCCATCATCCGCAAATCACCAAT
CATTCGATTGAACCCGCCGGCCCCGCTTGCTCGCGCTGGATCACTCCTCGTCTTTGTTGTGGGTC
TAGACCGATCCACACCCACACCCACACAAACCACCCACACACCCT
Found at i:37705 original size:11 final size:11
Alignment explanation
Indices: 37669--37751 Score: 82
Period size: 11 Copynumber: 7.7 Consensus size: 11
37659 GACCGATCCA
37669 CACC-CACACC
1 CACCACACACC
*
37679 CA-CACA-AAC
1 CACCACACACC
37688 CACCCACACACC
1 CA-CCACACACC
* *
37700 CTCCACACACA
1 CACCACACACC
37711 CACCACACACC
1 CACCACACACC
* *
37722 CTCCACACACA
1 CACCACACACC
37733 CACCACACACC
1 CACCACACACC
*
37744 CACTACAC
1 CACCACAC
37752 GCTTCAGACT
Statistics
Matches: 58, Mismatches: 11, Indels: 7
0.76 0.14 0.09
Matches are distributed among these distances:
9 5 0.09
10 4 0.07
11 46 0.79
12 3 0.05
ACGTcount: A:0.37, C:0.59, G:0.00, T:0.04
Consensus pattern (11 bp):
CACCACACACC
Left flanking sequence: Indices 37169 -- 37668
AAGGAGAAGAAGAAGAAGAAGTAGAAGACGAAGTAAAGTAGAAAACTGTGGTTCACTGAGAAAAG
AAGAAGTTGAAGAGTAGAAGACTCTGGTTTAGAGCGGTCATTTGGGTTCACCGTGAAGCCCTGAT
CGTAGGTGTGAATGAAACCATAGATGGAGACCCTGCTTTTAAAGTTGAGCCCACACCATTTGAAC
CCGATTCGAATCCCATTTTGGTAGCATTGCCAAGCCTGGATTGGGTTAATAAGCGGGAGTGGCAT
TCTGGAGAAATGCACTGAGATCAGATCTAGCGTGAGCTGGAATGCCAGTTTGTCGCCCAATTGGA
TGAAACTAGACCATTGAAGTGGTCCTTCTCTCGTCTAAGACACTTTAAAAGCTGGGTACAGCATC
ACGATGAACCTCCATCATCCGCAAATCACCAATCATTCGATTGAACCCGCCGGCCCCGCTTGCTC
GCGCTGGATCACTCCTCGTCTTTGTTGTGGGTCTAGACCGATCCA
Right flanking sequence: Indices 37752 -- 38251
GCTTCAGACTCATATCGTCGTTACTATGTACACTATGCACTAATTTTCCTCGTCGCGAGACTTGG
CCTCCTGCTTGAACCCCTCGGCCGCCACCTGGCGGAGCTCAGCACGCAGCTCCTCGGCCTTGCGC
TTGCGCGCTTGCATCTGGGCGTCACGACGCTCCAACTCCTCGATCCACAACTTTTCTCTGAGCTT
GGCCTTCTCGCGGAGCTGCTCCTCGCGCTTCTGCTTGTAGTCCACCGTCTCTTTTTTGAGCCAGA
ACAGACCCAGCACCAACGCAATCAACGTGATCGCCTGGAACACAATCCGGTACCGGAAGTACACC
TGGGTCTTGATCTTTTCCCCGCGCTTCATCAGCTTGGCAGCCAAAAACACCGCTGCCAGCGTGGC
CAAGGTGCCAAGCGGCACCACAGGCTGCTCCTTACACTTCTCCCAGATGCGGTGGACAAGGTCGT
CCTCCTCCTCTTTGAGCTCAAACGACGATGGGAGAGCACTGTTCA
Found at i:37716 original size:22 final size:22
Alignment explanation
Indices: 37667--37744 Score: 108
Period size: 22 Copynumber: 3.6 Consensus size: 22
37657 TAGACCGATC
* *
37667 CACACC-CACACCC-ACACAAA
1 CACACCACACACCCTCCACACA
37687 C-CACCCACACACCCTCCACACA
1 CACA-CCACACACCCTCCACACA
37709 CACACCACACACCCTCCACACA
1 CACACCACACACCCTCCACACA
37731 CACACCACACACCC
1 CACACCACACACCC
37745 ACTACACGCT
Statistics
Matches: 52, Mismatches: 2, Indels: 6
0.87 0.03 0.10
Matches are distributed among these distances:
19 2 0.04
20 3 0.06
21 7 0.13
22 38 0.73
23 2 0.04
ACGTcount: A:0.37, C:0.60, G:0.00, T:0.03
Consensus pattern (22 bp):
CACACCACACACCCTCCACACA
Left flanking sequence: Indices 37167 -- 37666
AGAAGGAGAAGAAGAAGAAGAAGTAGAAGACGAAGTAAAGTAGAAAACTGTGGTTCACTGAGAAA
AGAAGAAGTTGAAGAGTAGAAGACTCTGGTTTAGAGCGGTCATTTGGGTTCACCGTGAAGCCCTG
ATCGTAGGTGTGAATGAAACCATAGATGGAGACCCTGCTTTTAAAGTTGAGCCCACACCATTTGA
ACCCGATTCGAATCCCATTTTGGTAGCATTGCCAAGCCTGGATTGGGTTAATAAGCGGGAGTGGC
ATTCTGGAGAAATGCACTGAGATCAGATCTAGCGTGAGCTGGAATGCCAGTTTGTCGCCCAATTG
GATGAAACTAGACCATTGAAGTGGTCCTTCTCTCGTCTAAGACACTTTAAAAGCTGGGTACAGCA
TCACGATGAACCTCCATCATCCGCAAATCACCAATCATTCGATTGAACCCGCCGGCCCCGCTTGC
TCGCGCTGGATCACTCCTCGTCTTTGTTGTGGGTCTAGACCGATC
Right flanking sequence: Indices 37745 -- 38244
ACTACACGCTTCAGACTCATATCGTCGTTACTATGTACACTATGCACTAATTTTCCTCGTCGCGA
GACTTGGCCTCCTGCTTGAACCCCTCGGCCGCCACCTGGCGGAGCTCAGCACGCAGCTCCTCGGC
CTTGCGCTTGCGCGCTTGCATCTGGGCGTCACGACGCTCCAACTCCTCGATCCACAACTTTTCTC
TGAGCTTGGCCTTCTCGCGGAGCTGCTCCTCGCGCTTCTGCTTGTAGTCCACCGTCTCTTTTTTG
AGCCAGAACAGACCCAGCACCAACGCAATCAACGTGATCGCCTGGAACACAATCCGGTACCGGAA
GTACACCTGGGTCTTGATCTTTTCCCCGCGCTTCATCAGCTTGGCAGCCAAAAACACCGCTGCCA
GCGTGGCCAAGGTGCCAAGCGGCACCACAGGCTGCTCCTTACACTTCTCCCAGATGCGGTGGACA
AGGTCGTCCTCCTCCTCTTTGAGCTCAAACGACGATGGGAGAGCA
Found at i:38951 original size:16 final size:16
Alignment explanation
Indices: 38927--39000 Score: 123
Period size: 16 Copynumber: 4.7 Consensus size: 16
38917 ATAAGTAGTT
38927 CCCTTACACCAGCATA
1 CCCTTACACCAGCATA
*
38943 CCCTGACACCAGCATA
1 CCCTTACACCAGCATA
*
38959 TCC-TACACCAGCATA
1 CCCTTACACCAGCATA
38974 CCCTTACACCAGCATA
1 CCCTTACACCAGCATA
38990 CCCTTACACCA
1 CCCTTACACCA
39001 CTAACTCACT
Statistics
Matches: 53, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
15 13 0.25
16 40 0.75
ACGTcount: A:0.31, C:0.45, G:0.07, T:0.18
Consensus pattern (16 bp):
CCCTTACACCAGCATA
Left flanking sequence: Indices 38427 -- 38926
GGGGCGATCCCGGTTGCTGGGGCTCGTTGCCCGGTCTTTTCTTTTTACAGCAGTCCCCTGGCTGC
ACCCTGCACGATATAGAAGTAGAGAAAGAACCGGTGTGGCTGAAAAGGTGGTGTCGGTTTGCGGG
TAGGGGAGGTTAGATTAGATGCCAGAAAGAGTGGCTCCAGCGGGGTGAGGCTGGGATCATCAGAT
CGGGACCCTCGTTTAGCTGTAGGCACCCTGGATCAGTGTAGACCGGGGAATGAGCCCCTAAATAT
CCGCATTAAACCCATCCGGATAGATATAATAATTTACTCAACAAAGAAGGAAGAAAGGTGGTTCA
CCGGAAGGGTTACCGTAACGGGTTGTGAGTGGTACTGTAAGATACAAATACTCGTGAATACGATG
TCCCGGGCCACTCTATACGCACCTAGCCAACAACTCAAACTTACCGTAAGAAGACTTCGCTAGGG
CCTCTTGTACATATCTTGAGACAGACGGTTAACGCATAAGTAGTT
Right flanking sequence: Indices 39001 -- 39500
CTAACTCACTACCCAACCACCACACACTAATACCACATCTATTTTACTATCTATTAATCCTCCTT
GACGATGAACTCCTTGAACTCCTGGTAGGCGCGGTCCAAGTCGTCGTTGACAATCACCTTGTCGT
GGGCACCGGTGTTGGCGTACTCCATCTCCGAGGTCGCCGCGGCAAGACGCTTTTCAAGCAGCTCG
GGGGTCTCGGTGCCACGGCCCTCCAACCGAGCTCTCAACTCCGCGATGGAAGGAGGAGCCACAAA
CAAGTAGCGGGCGTTCAAGTCGGTGTTCTTCACCAGCTTGACCCCCTGCATATCGATGTCCAAAA
GACACTGCTTGCCCTTCTCAGCCACGTCCTTGACCGCACGCACCGAGGTCCCGTAGTAGTTGCCC
GAGAACTGGGCCCACTCGATGAACTCCTTGTTGTCGATCATCTTCTTGAACGCGTCCACCTCGGT
GAAGTTGTAGTCCTTCCCGTTGACCTCGCCGTCACGCGGCTGACG
Found at i:38969 original size:31 final size:32
Alignment explanation
Indices: 38927--39000 Score: 123
Period size: 31 Copynumber: 2.3 Consensus size: 32
38917 ATAAGTAGTT
38927 CCCTTACACCAGCATACCCTGACACCAGCATA
1 CCCTTACACCAGCATACCCTGACACCAGCATA
* *
38959 TCC-TACACCAGCATACCCTTACACCAGCATA
1 CCCTTACACCAGCATACCCTGACACCAGCATA
38990 CCCTTACACCA
1 CCCTTACACCA
39001 CTAACTCACT
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
31 29 0.76
32 9 0.24
ACGTcount: A:0.31, C:0.45, G:0.07, T:0.18
Consensus pattern (32 bp):
CCCTTACACCAGCATACCCTGACACCAGCATA
Left flanking sequence: Indices 38427 -- 38926
GGGGCGATCCCGGTTGCTGGGGCTCGTTGCCCGGTCTTTTCTTTTTACAGCAGTCCCCTGGCTGC
ACCCTGCACGATATAGAAGTAGAGAAAGAACCGGTGTGGCTGAAAAGGTGGTGTCGGTTTGCGGG
TAGGGGAGGTTAGATTAGATGCCAGAAAGAGTGGCTCCAGCGGGGTGAGGCTGGGATCATCAGAT
CGGGACCCTCGTTTAGCTGTAGGCACCCTGGATCAGTGTAGACCGGGGAATGAGCCCCTAAATAT
CCGCATTAAACCCATCCGGATAGATATAATAATTTACTCAACAAAGAAGGAAGAAAGGTGGTTCA
CCGGAAGGGTTACCGTAACGGGTTGTGAGTGGTACTGTAAGATACAAATACTCGTGAATACGATG
TCCCGGGCCACTCTATACGCACCTAGCCAACAACTCAAACTTACCGTAAGAAGACTTCGCTAGGG
CCTCTTGTACATATCTTGAGACAGACGGTTAACGCATAAGTAGTT
Right flanking sequence: Indices 39001 -- 39500
CTAACTCACTACCCAACCACCACACACTAATACCACATCTATTTTACTATCTATTAATCCTCCTT
GACGATGAACTCCTTGAACTCCTGGTAGGCGCGGTCCAAGTCGTCGTTGACAATCACCTTGTCGT
GGGCACCGGTGTTGGCGTACTCCATCTCCGAGGTCGCCGCGGCAAGACGCTTTTCAAGCAGCTCG
GGGGTCTCGGTGCCACGGCCCTCCAACCGAGCTCTCAACTCCGCGATGGAAGGAGGAGCCACAAA
CAAGTAGCGGGCGTTCAAGTCGGTGTTCTTCACCAGCTTGACCCCCTGCATATCGATGTCCAAAA
GACACTGCTTGCCCTTCTCAGCCACGTCCTTGACCGCACGCACCGAGGTCCCGTAGTAGTTGCCC
GAGAACTGGGCCCACTCGATGAACTCCTTGTTGTCGATCATCTTCTTGAACGCGTCCACCTCGGT
GAAGTTGTAGTCCTTCCCGTTGACCTCGCCGTCACGCGGCTGACG
Found at i:53262 original size:13 final size:13
Alignment explanation
Indices: 53244--53279 Score: 72
Period size: 13 Copynumber: 2.8 Consensus size: 13
53234 GTCCGATAGT
53244 GTCAGAGACGGTG
1 GTCAGAGACGGTG
53257 GTCAGAGACGGTG
1 GTCAGAGACGGTG
53270 GTCAGAGACG
1 GTCAGAGACG
53280 ATAGCTAGCC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.25, C:0.17, G:0.44, T:0.14
Consensus pattern (13 bp):
GTCAGAGACGGTG
Left flanking sequence: Indices 52744 -- 53243
CCCGTTTGGCGGTGGGCTGGCCCAAGTTCGCAAGCCAGTCGTCGTCATTGGTGTGCTTCAGCGTG
TTTTTGCTTCTGTTGAGCGCGTCCTTGCTCTGTTGGACCCGTTGCTGGACGAACAGGTTGAGGTC
CACCGCGGGCTCGGGCTCGCGCGGGGTTTGGGCAAAAGACGGTCGCGGGGGTGGTTTCGGGCGCT
CGTTGGTAGGCTCCGGGATAAGCTTGAGCCCGAGCTTGGCCCGTAGCCGGTTGGTTTCGGCGAGG
GAAAGGTCTATCACGGCCATGAGATGAGTCGCACATCTACAATCATGGATCATAACCGGGAGCAC
AGGGGTGGGAAGGGGGTGAGGATAAAGGAAGTTGAGTAGCTGAGTAGAATATAGGTGAAGATACA
CATTTGCTAGGTAAGACATAGTTTTACCAAGCGGTTGTAGCCAACAAGATGTCAAGTACTACGCT
TTGGAATCTGAGAACAGGACAGAGTGTCAGGTAGTGTCCGATAGT
Right flanking sequence: Indices 53280 -- 53779
ATAGCTAGCCAATGACGCACCCATCATACAAAACCCGCGTACAACACACACCAGCCAATCTACGC
TACCCATTGCATTACAGTCGTGTATTCCTACCACTGTTCGTGTGCCAACGGCTAATATATACAGT
CATCTTCTTCGCTATCTCCGGGGGGTAAACTTGGCACTCTCGATCGGGTTCTTGTCCTTCGACTC
GTCTGCCTGCTTCCACGGGTCCTCGGCCTTCGCCTGCTCCTCGTACTCCTTGAGGTAGGCCTGCT
GCTCATCCCGTGCCCGCTGGAGCTCGTGCTGCAATTTGGCCCGGTGCTCCTGCTCCAACCGCTCT
TTCTCCGCGTACCACTTCAGCTCTGCCTGCGCAGCCAACACCTTGATCTTCTGCTGGCGCATCTC
GTCCGCGGTCAACTCCTCGAGGGTGGGTGCTGGGTACCGGGTGCGCCGCAACCACTGGAGCCACT
GCGGAGGGACAGTCGAGAAGTAGTCCAGCTTGAACAACAACAGCT
Found at i:59009 original size:14 final size:14
Alignment explanation
Indices: 58988--59076 Score: 101
Period size: 14 Copynumber: 6.4 Consensus size: 14
58978 ATAACGATAT
58988 AGCAATGAACGACC
1 AGCAATGAACGACC
*
59002 AACAATGAACGACC
1 AGCAATGAACGACC
*
59016 AGCGATG-ACGACC
1 AGCAATGAACGACC
*
59029 AGCGATG-ACGACC
1 AGCAATGAACGACC
* *
59042 AGCGATGAACGACG
1 AGCAATGAACGACC
*
59056 AGCATTGAACGACC
1 AGCAATGAACGACC
59070 ATGCAAT
1 A-GCAAT
59077 AAATAATACA
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
13 26 0.40
14 35 0.54
15 4 0.06
ACGTcount: A:0.38, C:0.27, G:0.25, T:0.10
Consensus pattern (14 bp):
AGCAATGAACGACC
Left flanking sequence: Indices 58488 -- 58987
TACGAGCCCATTAACGCCGAGGAGTTGGAGCAACAGTCGCTTGCGATCGAGCAGCGCGAGCAGGA
GATCCACCGCATCCACCAGGACACACTTGAGATCAACGAGATCTTTGAGAACTTGTCGTCGATAG
TCAACCAGCAGCAGTACCAGGTGGACAACATCGAGGAGAACTTGTTCAACTACTCCACCGACGTG
CGGGGCGCGCACACCGAGCTCAGGCGAGCAGAGCGGTACCAGCGACGCTCGGGCGGGGTGATGTG
CTACTGTCTAGGCATTCTCTTGATTCTTCTCGGGTTGATTATATTAGTGTTGATGATATAAGAAA
GTGGAAAGAGTGATTGGTGAAGTCAGTGGTGAAGATGGTGAAAGAAGTCAGTGTGGGGGTACATG
GACACCAAAAGACAAAGGAAGGTAACTGGCTGAACCTATGAACCCATAGATAGACCAAACTGGGG
CAACCATACCAGGCTCACAGGCAACCCCGTAACGAATAACGATAT
Right flanking sequence: Indices 59077 -- 59576
AAATAATACACAATGAACGATGAGTAACGGACAAACGCAATGAACTCGCTTCAACCGCTCACGCA
AGCGTCCACACGTTGACACACCCGTCGTCGCCTCCGGTCACAAGCACCTCGGCGTCGTCCTCGGC
CAACTGGGCAAACTCCACGCTGTTCACCTCGTACACCCCATGCGCGTACTCCTGGGTGGCCTCCA
CCACCCACCCGTCGTCGGTTTCGCGGTACACGGCCACGGTGCCGTCACACCCGGTGGTGGCGATC
CGTCCCAGCACCCGCGACCAGCTCACCAGGTAGATCGGGTACTTGTGCAATGCGGGCAACGTCGC
CTCCTCGCGCCACTCCATGTCGGTCAGCCGGCGGATCGAGCTCGGGATCAGCTCTGTCCGGTCGT
TTTCCTCGGTGGGCTCGTCCACGGCCCGCCAGATCCGCGCCGTCTTGTCGTCCAGCACCAGCACC
AACCGCACTTTGGGGCCTCTGGGGTCGAACTTCAGACACCATACG
Done.