Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: scaffold18
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 109335
ACGTcount: A:0.22, C:0.29, G:0.28, T:0.21
Found at i:6680 original size:15 final size:15
Alignment explanation
Indices: 6669--6697 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
6659 CGCTGGTGTG
6669 GGTGCTGCTGGTGCC
1 GGTGCTGCTGGTGCC
6684 GGTGCTGCTGGTGC
1 GGTGCTGCTGGTGC
6698 TGCTGGTGCT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.00, C:0.24, G:0.48, T:0.28
Consensus pattern (15 bp):
GGTGCTGCTGGTGCC
Left flanking sequence: Indices 6169 -- 6668
AGACCGGCGGTTTGTGGACCCAGGGTGCGCTCTACGGGAAGCCCGCGGGCATTTTCGTGTCCACG
GGCACCCCCGGTGGCGGCCAGGAGTTGACTGTGCGCAACCTGTTGTCGTACTTGGCCCACCACGG
GTTGCCGTACATTCCCTTGGGATACTCTTCGCCCGATATCGGGTCTTTTGACGAGGTGCACGGTG
GTTCCCCCTGGGGTGCTGGCACTTACGCTGGTGCGGACGGGCTGAGACAGCCCAACAACACCGAG
TTGCGGATTGCCGAGCACCAGGGGAAGACGTTTGCCCAGTTGGCGAAGAAGATTGTGGGCGACGG
TGCCTCTGGGGCTGGTGCTGGTGCTGCTGGTGGCAAGGCCCAGGGCTCTGGTGCTGCTGGTGACG
CGCCTGTGTCCAAGGAGGCCACTGGTGCCGGTGCTGCTGGCTCTGGTGCTGGTGCTACGGACGCT
GGTGAGCCTGGCACTGGCTCTGGTGCTGCTGCGGCCGCTGGTGTG
Right flanking sequence: Indices 6698 -- 7197
TGCTGGTGCTGCCGCTGCTTCCAAGGACAAGAAGAACTTGGACCCCAAGGCCCAGGGCTCGGACG
CCACCGCGCTGAACTTGGACCCCAAGAAGAAGACGTTGGACGTTTCTGCGGACGACAAGGCCACC
GGTGCTACTGGCACTGGTACCGCGGGTGCGGCCACCACCGACGCTGACAAGCTGAAGGCTGCGGG
CACCAAGGAAGGTGCGGCCAAGGACGAGAACTTGGACAAGGAGGCTGCTACCACCAAGGAGCAGG
TCAAGTCCGAGGAGCCTGGGGCCAAGTTGCGCAGCGAGCAGGCGAAAAAGGCGGACCCTGCCAAG
GAGAAGCTGGAGAAGAGCGGGTGCGCCAAGTGTATTATTATGTAAGAAATTAATGGCCAGTGGTA
GTGGGTTGTATTAGAGGTGGGGTTGTGGGGGTTTTGATGGGATTGTGGGTTAGTAGTGGCAGAGG
TAGTGGGGTTGTGGTTGTCGTTTGATTGTACTGGTTGTCTCTATA
Found at i:6681 original size:9 final size:9
Alignment explanation
Indices: 6643--6709 Score: 67
Period size: 9 Copynumber: 8.1 Consensus size: 9
6633 GGCACTGGCT
6643 CTGGTGCTG
1 CTGGTGCTG
*
6652 CTGCG-GCCG
1 CTG-GTGCTG
6661 CTGGTG-TG
1 CTGGTGCTG
6669 --GGTGCTG
1 CTGGTGCTG
6676 CTGGTGC--
1 CTGGTGCTG
6683 C-GGTGCTG
1 CTGGTGCTG
6691 CTGGTGCTG
1 CTGGTGCTG
6700 CTGGTGCTG
1 CTGGTGCTG
6709 C
1 C
6710 CGCTGCTTCC
Statistics
Matches: 48, Mismatches: 2, Indels: 16
0.73 0.03 0.24
Matches are distributed among these distances:
6 9 0.19
7 3 0.06
8 3 0.06
9 32 0.67
10 1 0.02
ACGTcount: A:0.00, C:0.25, G:0.46, T:0.28
Consensus pattern (9 bp):
CTGGTGCTG
Left flanking sequence: Indices 6143 -- 6642
TGCCCAGTGGGTGGAGTTCTGGGGACAGACCGGCGGTTTGTGGACCCAGGGTGCGCTCTACGGGA
AGCCCGCGGGCATTTTCGTGTCCACGGGCACCCCCGGTGGCGGCCAGGAGTTGACTGTGCGCAAC
CTGTTGTCGTACTTGGCCCACCACGGGTTGCCGTACATTCCCTTGGGATACTCTTCGCCCGATAT
CGGGTCTTTTGACGAGGTGCACGGTGGTTCCCCCTGGGGTGCTGGCACTTACGCTGGTGCGGACG
GGCTGAGACAGCCCAACAACACCGAGTTGCGGATTGCCGAGCACCAGGGGAAGACGTTTGCCCAG
TTGGCGAAGAAGATTGTGGGCGACGGTGCCTCTGGGGCTGGTGCTGGTGCTGCTGGTGGCAAGGC
CCAGGGCTCTGGTGCTGCTGGTGACGCGCCTGTGTCCAAGGAGGCCACTGGTGCCGGTGCTGCTG
GCTCTGGTGCTGGTGCTACGGACGCTGGTGAGCCTGGCACTGGCT
Right flanking sequence: Indices 6710 -- 7209
CGCTGCTTCCAAGGACAAGAAGAACTTGGACCCCAAGGCCCAGGGCTCGGACGCCACCGCGCTGA
ACTTGGACCCCAAGAAGAAGACGTTGGACGTTTCTGCGGACGACAAGGCCACCGGTGCTACTGGC
ACTGGTACCGCGGGTGCGGCCACCACCGACGCTGACAAGCTGAAGGCTGCGGGCACCAAGGAAGG
TGCGGCCAAGGACGAGAACTTGGACAAGGAGGCTGCTACCACCAAGGAGCAGGTCAAGTCCGAGG
AGCCTGGGGCCAAGTTGCGCAGCGAGCAGGCGAAAAAGGCGGACCCTGCCAAGGAGAAGCTGGAG
AAGAGCGGGTGCGCCAAGTGTATTATTATGTAAGAAATTAATGGCCAGTGGTAGTGGGTTGTATT
AGAGGTGGGGTTGTGGGGGTTTTGATGGGATTGTGGGTTAGTAGTGGCAGAGGTAGTGGGGTTGT
GGTTGTCGTTTGATTGTACTGGTTGTCTCTATAGTGCATTCTTTG
Found at i:6684 original size:24 final size:24
Alignment explanation
Indices: 6643--6716 Score: 80
Period size: 24 Copynumber: 3.1 Consensus size: 24
6633 GGCACTGGCT
*
6643 CTGGTGCTGCTGCG-GCCGCTGGTG
1 CTGGTGCTGCTG-GTGCCGCTGCTG
*
6667 -TGGGTGCTGCTGGTGCCGGTGCTG
1 CT-GGTGCTGCTGGTGCCGCTGCTG
* *
6691 CTGGTGCTGCTGGTGCTGCCGCTG
1 CTGGTGCTGCTGGTGCCGCTGCTG
6715 CT
1 CT
6717 TCCAAGGACA
Statistics
Matches: 42, Mismatches: 5, Indels: 6
0.79 0.09 0.11
Matches are distributed among these distances:
23 2 0.05
24 39 0.93
25 1 0.02
ACGTcount: A:0.00, C:0.27, G:0.45, T:0.28
Consensus pattern (24 bp):
CTGGTGCTGCTGGTGCCGCTGCTG
Left flanking sequence: Indices 6143 -- 6642
TGCCCAGTGGGTGGAGTTCTGGGGACAGACCGGCGGTTTGTGGACCCAGGGTGCGCTCTACGGGA
AGCCCGCGGGCATTTTCGTGTCCACGGGCACCCCCGGTGGCGGCCAGGAGTTGACTGTGCGCAAC
CTGTTGTCGTACTTGGCCCACCACGGGTTGCCGTACATTCCCTTGGGATACTCTTCGCCCGATAT
CGGGTCTTTTGACGAGGTGCACGGTGGTTCCCCCTGGGGTGCTGGCACTTACGCTGGTGCGGACG
GGCTGAGACAGCCCAACAACACCGAGTTGCGGATTGCCGAGCACCAGGGGAAGACGTTTGCCCAG
TTGGCGAAGAAGATTGTGGGCGACGGTGCCTCTGGGGCTGGTGCTGGTGCTGCTGGTGGCAAGGC
CCAGGGCTCTGGTGCTGCTGGTGACGCGCCTGTGTCCAAGGAGGCCACTGGTGCCGGTGCTGCTG
GCTCTGGTGCTGGTGCTACGGACGCTGGTGAGCCTGGCACTGGCT
Right flanking sequence: Indices 6717 -- 7216
TCCAAGGACAAGAAGAACTTGGACCCCAAGGCCCAGGGCTCGGACGCCACCGCGCTGAACTTGGA
CCCCAAGAAGAAGACGTTGGACGTTTCTGCGGACGACAAGGCCACCGGTGCTACTGGCACTGGTA
CCGCGGGTGCGGCCACCACCGACGCTGACAAGCTGAAGGCTGCGGGCACCAAGGAAGGTGCGGCC
AAGGACGAGAACTTGGACAAGGAGGCTGCTACCACCAAGGAGCAGGTCAAGTCCGAGGAGCCTGG
GGCCAAGTTGCGCAGCGAGCAGGCGAAAAAGGCGGACCCTGCCAAGGAGAAGCTGGAGAAGAGCG
GGTGCGCCAAGTGTATTATTATGTAAGAAATTAATGGCCAGTGGTAGTGGGTTGTATTAGAGGTG
GGGTTGTGGGGGTTTTGATGGGATTGTGGGTTAGTAGTGGCAGAGGTAGTGGGGTTGTGGTTGTC
GTTTGATTGTACTGGTTGTCTCTATAGTGCATTCTTTGGTTTGTT
Found at i:6708 original size:15 final size:15
Alignment explanation
Indices: 6660--6699 Score: 55
Period size: 15 Copynumber: 2.7 Consensus size: 15
6650 TGCTGCGGCC
6660 GCTGGTG-TGGGTGCT
1 GCTGGTGCT-GGTGCT
*
6675 GCTGGTGCCGGTGCT
1 GCTGGTGCTGGTGCT
6690 GCTGGTGCTG
1 GCTGGTGCTG
6700 CTGGTGCTGC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.00, C:0.20, G:0.50, T:0.30
Consensus pattern (15 bp):
GCTGGTGCTGGTGCT
Left flanking sequence: Indices 6160 -- 6659
TCTGGGGACAGACCGGCGGTTTGTGGACCCAGGGTGCGCTCTACGGGAAGCCCGCGGGCATTTTC
GTGTCCACGGGCACCCCCGGTGGCGGCCAGGAGTTGACTGTGCGCAACCTGTTGTCGTACTTGGC
CCACCACGGGTTGCCGTACATTCCCTTGGGATACTCTTCGCCCGATATCGGGTCTTTTGACGAGG
TGCACGGTGGTTCCCCCTGGGGTGCTGGCACTTACGCTGGTGCGGACGGGCTGAGACAGCCCAAC
AACACCGAGTTGCGGATTGCCGAGCACCAGGGGAAGACGTTTGCCCAGTTGGCGAAGAAGATTGT
GGGCGACGGTGCCTCTGGGGCTGGTGCTGGTGCTGCTGGTGGCAAGGCCCAGGGCTCTGGTGCTG
CTGGTGACGCGCCTGTGTCCAAGGAGGCCACTGGTGCCGGTGCTGCTGGCTCTGGTGCTGGTGCT
ACGGACGCTGGTGAGCCTGGCACTGGCTCTGGTGCTGCTGCGGCC
Right flanking sequence: Indices 6700 -- 7199
CTGGTGCTGCCGCTGCTTCCAAGGACAAGAAGAACTTGGACCCCAAGGCCCAGGGCTCGGACGCC
ACCGCGCTGAACTTGGACCCCAAGAAGAAGACGTTGGACGTTTCTGCGGACGACAAGGCCACCGG
TGCTACTGGCACTGGTACCGCGGGTGCGGCCACCACCGACGCTGACAAGCTGAAGGCTGCGGGCA
CCAAGGAAGGTGCGGCCAAGGACGAGAACTTGGACAAGGAGGCTGCTACCACCAAGGAGCAGGTC
AAGTCCGAGGAGCCTGGGGCCAAGTTGCGCAGCGAGCAGGCGAAAAAGGCGGACCCTGCCAAGGA
GAAGCTGGAGAAGAGCGGGTGCGCCAAGTGTATTATTATGTAAGAAATTAATGGCCAGTGGTAGT
GGGTTGTATTAGAGGTGGGGTTGTGGGGGTTTTGATGGGATTGTGGGTTAGTAGTGGCAGAGGTA
GTGGGGTTGTGGTTGTCGTTTGATTGTACTGGTTGTCTCTATAGT
Found at i:8417 original size:13 final size:13
Alignment explanation
Indices: 8401--8435 Score: 61
Period size: 13 Copynumber: 2.7 Consensus size: 13
8391 TCTCTCATTA
8401 TCATACTCATCAT
1 TCATACTCATCAT
8414 TCATACTCATCAT
1 TCATACTCATCAT
*
8427 ACATACTCA
1 TCATACTCA
8436 CGCCTCTTGC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.34, C:0.31, G:0.00, T:0.34
Consensus pattern (13 bp):
TCATACTCATCAT
Left flanking sequence: Indices 7901 -- 8400
TCGCGTAAAAGTTTATTTGCAACCATCAGGTGACAGTGGCGAGGTGGTGAGCTAATGTTTCAGGA
ACCAGGGTCATTGGCTGATCCGGCGCCTCCGATTGTAAATCCAGGGGGTCCACAATGTGGCGACG
TGTCCCCCACAATGGTGCAATATGCGGTAAACGACGCAAATTCAGTACTGCGTTCACAATTACAA
AGTGTAGCTGACACTGGTCATGACGCTTGTGTAAATGACACTGATTATGATTACACTGCATTCCA
CCCACAAAGATTCTGGCCATACTCATATCTTATCTCACCTCTTATTCTCATTACCACCACAATAA
CATATGGCCTTACTTGTACTCGTTGTCTCATTCTCACTGCCACCATGACTTCTGGCCTTACCCTT
TCTCATCACTCATTCTCATTACCACCAATGTCTTCTGGCCATACTCATACCCTTTCTTATCTCTT
CTATTACCACCATGTCCCTAACCATTCATCTCTCATCTCTCATTA
Right flanking sequence: Indices 8436 -- 8935
CGCCTCTTGCGAGATCAAAACCTTAATATGCGTGGCCCGGTTGCGGAGAAGCTCGTCGAAACCAC
GCTCCACCCCCTCCTCAATCGGAACAACCGCCGTAATCAACCGCTTCACCTGGGCAGGGTCAAGC
TTGCCCTGCTCAAACGCAGCCACCACGTCGACAAAGTCCTGCTTCACGTAGCACATCAGACCGGT
AACGATCCGCTCGGTGAGCGTCACGTCCATCACGAAGAAGTCCACGGGGTTCGGGGGCCAGATGG
CCACGTTGGTCCCGATCCCGCCCGTTCTAAGCGCGTGCACCATGCAGTTGAACGTCACCTTGATC
CCCAGACAGTCGTAGACCCGGTCAAACCCCCGCGAGTCCGGCAGCAACTTGCGGATGGCCACGTC
GGAGTCCTTGGGCAGCGAGTACGGAGCAGGGTCAAACACCACCGCCCCGAGGTCCTTCGCCAACT
CGCGCCGGGCCGCGGCGGGCTCGCTCATCACCACGTTACTCACCC
Found at i:10175 original size:11 final size:11
Alignment explanation
Indices: 10161--10186 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
10151 AGGGTGTGTA
10161 CAGGGTGTCAC
1 CAGGGTGTCAC
10172 CAGGGTGTCAC
1 CAGGGTGTCAC
10183 CAGG
1 CAGG
10187 TTGCCAACAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.19, C:0.27, G:0.38, T:0.15
Consensus pattern (11 bp):
CAGGGTGTCAC
Left flanking sequence: Indices 9661 -- 10160
AAAACATTCCCGTTTGTGGGGCGATGGTGAAACGACACCGCCCGCCTGACAATCGCCAGAATCTG
GGGTAACCCTTGTTGGAGCCACCGGTGTGCAGATACACCCCGACGGGCCTATGTGCACACCGAGG
ACGGCGAGGGTACTTAAGTCGTCATCGGGAAAAAAAAACTTTGACTGAACCGGGCTCTTTGAACA
GCTATGCCGGATCCACGTGGTCCCCAGTGTAGGTGTCCTCTCTAATCCCGGGATAGAAACAGGGC
GAGTATTGCCAGGAGTTGCCCAGCGTGGGTTGTCCCTAATACCGCGTCCGACAATGTTGGGGTAG
TAGTTCCTCGCTCATAATCACGGAGTTTGGGTTGTCAGGGGAAGGGTGCGATCGAACAGTTACGT
CACCGTAGACGAGGATAAGACGAGCGATAACGAGTGATGACGAGCGATAACTCCAGTGGTCAGGT
TGTTAAGAGGGTGTAGGGTTGTCAACGGGGTGTCTAGGGTGTGTA
Right flanking sequence: Indices 10187 -- 10686
TTGCCAACAGGCTTGTCTAAGGGTGTCTAAGGGTGTTTAAGGGTGTACAGAAGTGTCTGAGATCG
CCAGGGTCACATCCACTACCACCTTCACCCCACCTCCACACTGCACCTCCGGGTGCTCACGGCTC
ACGGCTCGCGCCTCCGTGACTCTACTCTTTCCTGTGTCACTTTTACTATGTTACAAACCCAATTT
CAAACCAGGATAATTATACACCGTGGGTCCCGGCCCGCAGGAACCACGTTACTTGCCGAGACAAA
ACGACACACACTCCGGCTTCACCTTTTTGCAGTCGCCGCCATTCTTGAGGCTGCACCGTCTCACA
TAGTCCTTTTTCTCGTCAAACTTTGCAAACCCCTTGCTGCTGTCCACGCTGGCGCGGCGGTCACT
GGCCTTTCTAAATAGCGACATTTCGATTAAAACTGAACCTGGGGTGGCCGTACTGAACTTTCACA
GTCCTTGTAAGCGGAGTGCTTTCCGGATGAAATTAACGCGCTGGC
Found at i:10215 original size:10 final size:10
Alignment explanation
Indices: 10200--10232 Score: 57
Period size: 10 Copynumber: 3.3 Consensus size: 10
10190 CCAACAGGCT
10200 TGTCTAAGGG
1 TGTCTAAGGG
10210 TGTCTAAGGG
1 TGTCTAAGGG
*
10220 TGTTTAAGGG
1 TGTCTAAGGG
10230 TGT
1 TGT
10233 ACAGAAGTGT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
10 22 1.00
ACGTcount: A:0.18, C:0.06, G:0.39, T:0.36
Consensus pattern (10 bp):
TGTCTAAGGG
Left flanking sequence: Indices 9700 -- 10199
GCCCGCCTGACAATCGCCAGAATCTGGGGTAACCCTTGTTGGAGCCACCGGTGTGCAGATACACC
CCGACGGGCCTATGTGCACACCGAGGACGGCGAGGGTACTTAAGTCGTCATCGGGAAAAAAAAAC
TTTGACTGAACCGGGCTCTTTGAACAGCTATGCCGGATCCACGTGGTCCCCAGTGTAGGTGTCCT
CTCTAATCCCGGGATAGAAACAGGGCGAGTATTGCCAGGAGTTGCCCAGCGTGGGTTGTCCCTAA
TACCGCGTCCGACAATGTTGGGGTAGTAGTTCCTCGCTCATAATCACGGAGTTTGGGTTGTCAGG
GGAAGGGTGCGATCGAACAGTTACGTCACCGTAGACGAGGATAAGACGAGCGATAACGAGTGATG
ACGAGCGATAACTCCAGTGGTCAGGTTGTTAAGAGGGTGTAGGGTTGTCAACGGGGTGTCTAGGG
TGTGTACAGGGTGTCACCAGGGTGTCACCAGGTTGCCAACAGGCT
Right flanking sequence: Indices 10233 -- 10732
ACAGAAGTGTCTGAGATCGCCAGGGTCACATCCACTACCACCTTCACCCCACCTCCACACTGCAC
CTCCGGGTGCTCACGGCTCACGGCTCGCGCCTCCGTGACTCTACTCTTTCCTGTGTCACTTTTAC
TATGTTACAAACCCAATTTCAAACCAGGATAATTATACACCGTGGGTCCCGGCCCGCAGGAACCA
CGTTACTTGCCGAGACAAAACGACACACACTCCGGCTTCACCTTTTTGCAGTCGCCGCCATTCTT
GAGGCTGCACCGTCTCACATAGTCCTTTTTCTCGTCAAACTTTGCAAACCCCTTGCTGCTGTCCA
CGCTGGCGCGGCGGTCACTGGCCTTTCTAAATAGCGACATTTCGATTAAAACTGAACCTGGGGTG
GCCGTACTGAACTTTCACAGTCCTTGTAAGCGGAGTGCTTTCCGGATGAAATTAACGCGCTGGCT
GGGGTGATTCGAGGGTCAAACTTGTTTTCCTGGCGACGGGATTCT
Found at i:12023 original size:7 final size:7
Alignment explanation
Indices: 12006--12040 Score: 61
Period size: 7 Copynumber: 4.9 Consensus size: 7
11996 GAGCGGAAAA
12006 AGAAGGGT
1 AGAA-GGT
12014 AGAAGGT
1 AGAAGGT
12021 AGAAGGT
1 AGAAGGT
12028 AGAAGGT
1 AGAAGGT
12035 AGAAGG
1 AGAAGG
12041 GTGGAAAATA
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
7 23 0.85
8 4 0.15
ACGTcount: A:0.43, C:0.00, G:0.46, T:0.11
Consensus pattern (7 bp):
AGAAGGT
Left flanking sequence: Indices 11506 -- 12005
GGGGCTGTTGTGGCGCGCCTCAGACACGGTGGGATGTTTAATCCCCGAGTAAGCGCAATCTGGTA
GCCTCGGGTGGGCCATGCACGACCACGGGTTGCAGGTGGCTTTAGCAGAACCAATCATCGGGGCG
GCGTATGGGGTGACCAAGCACCCAGGAAGCTACAGGGAAGCTACAGGGGGGCTACAAAGATCGCC
GAGACCCGTTGGGTCCCGTTTTTCCGTCGTCTTGGCACTCAAGCGCGATCAACGGGCCGTTGCCA
ATGGTAGCAACCGCGAAAAGAGACTCGGGTTTTCCCTTTGGGAGCTACCGAGGAATTCCGCAAAG
CAAACGAGCGCCAAACGGGGGTGCTGCGTGCTGTACGTAGCCGTGTAGTTCCACGTAGGATCGTC
CGTGCAGCCGTTATGTCAACAGAGCAGAGCCAAGCAAATGTAAAAAGACGAAAAAGAACAGAGCG
AAGACGGAACCGAAAGAAAGAAACGAAAGTAGAGAGAGCGGAAAA
Right flanking sequence: Indices 12041 -- 12540
GTGGAAAATATAGCAAAATACCTCTGGGTAACACCATCGGGTGCTCTACAGTGCTGTTGTAGCCC
GGAGGCTCGTGTCATTAGTAACGTCTATGTAACCGTGTCAAAAGAAACCGCAACGGATGCCGGCG
CTAGCCGCGATGACATGCGTCGATCAATGCAATGGCGAGATAATTTTCGAGCCAGGCTGCCGGGC
GCCTATTGTGGCTGCACGATGGCAGGCGGGACGGTGGCTAGTGGTCCAGTGGTGGTTTGAAGGCA
TTCAGAGATTTTTTCTGATGGCCTTGGTGGCTAGCCATCTGGTGTAGTTGCTAGCCATCTGGTGG
CAGTTGGTAGGGTTGGCCCATTAGGAGTTACTCAAAGGGGAAACTCCCAAAGTGGACTCCCAAAG
TCTCCCAAAGTGGACTCCCAAAGTGGACTCCCAAAGTGGACTCCCAAAGTGGGTAACTTAGGGAT
GTAGCAGTCACACTAGCATTTCCTCGGTGTTAGCATATGCAAAAT
Found at i:12424 original size:13 final size:13
Alignment explanation
Indices: 12408--12482 Score: 129
Period size: 13 Copynumber: 6.0 Consensus size: 13
12398 CAAAGGGGAA
12408 ACTCCCAAAGTGG
1 ACTCCCAAAGTGG
12421 ACTCCCAAAGT--
1 ACTCCCAAAGTGG
12432 -CTCCCAAAGTGG
1 ACTCCCAAAGTGG
12444 ACTCCCAAAGTGG
1 ACTCCCAAAGTGG
12457 ACTCCCAAAGTGG
1 ACTCCCAAAGTGG
12470 ACTCCCAAAGTGG
1 ACTCCCAAAGTGG
12483 GTAACTTAGG
Statistics
Matches: 59, Mismatches: 0, Indels: 6
0.91 0.00 0.09
Matches are distributed among these distances:
10 10 0.17
13 49 0.83
ACGTcount: A:0.31, C:0.32, G:0.21, T:0.16
Consensus pattern (13 bp):
ACTCCCAAAGTGG
Left flanking sequence: Indices 11908 -- 12407
ATGTCAACAGAGCAGAGCCAAGCAAATGTAAAAAGACGAAAAAGAACAGAGCGAAGACGGAACCG
AAAGAAAGAAACGAAAGTAGAGAGAGCGGAAAAAGAAGGGTAGAAGGTAGAAGGTAGAAGGTAGA
AGGGTGGAAAATATAGCAAAATACCTCTGGGTAACACCATCGGGTGCTCTACAGTGCTGTTGTAG
CCCGGAGGCTCGTGTCATTAGTAACGTCTATGTAACCGTGTCAAAAGAAACCGCAACGGATGCCG
GCGCTAGCCGCGATGACATGCGTCGATCAATGCAATGGCGAGATAATTTTCGAGCCAGGCTGCCG
GGCGCCTATTGTGGCTGCACGATGGCAGGCGGGACGGTGGCTAGTGGTCCAGTGGTGGTTTGAAG
GCATTCAGAGATTTTTTCTGATGGCCTTGGTGGCTAGCCATCTGGTGTAGTTGCTAGCCATCTGG
TGGCAGTTGGTAGGGTTGGCCCATTAGGAGTTACTCAAAGGGGAA
Right flanking sequence: Indices 12483 -- 12982
GTAACTTAGGGATGTAGCAGTCACACTAGCATTTCCTCGGTGTTAGCATATGCAAAATACCGACT
GAGAGGCTCGTGATCGACTCCTGATTGAGAGGCTCGTGATTGAAACTCTTGATTGAGAGACTCTT
GACTGAGAGCACTGACTACCGAAACCATCTCTGGAATCCAGTGATGATTATCTAAGCAAGCCAGT
GAGCAAACCGGTGAGCAAAGCAGTGAGCAAAGCAGTGAGCAAAGCCAGGGAGAAAGCCAGGAAGA
AGCCAGGGAATCCTAGTAGTAGCGTCCATAAGAGTGTGTCAACCTTGTAAACCACTTCTTTACCC
CTAATACTAGCGTCCACCAGTGTGAACCTCATCTCTACCCAAAGTAGTATACCTCAACCTTGTAC
ACCACTTCTCTACCCCTAGTAGCTTCCACCAGTGTAAACCACGTCTCTAACCCTACCAGACCCTT
ATTGAACCCCTATCCTTCGTCCCCTACTCAAGTAAATGGGCCAGG
Found at i:12583 original size:26 final size:27
Alignment explanation
Indices: 12547--12606 Score: 86
Period size: 26 Copynumber: 2.2 Consensus size: 27
12537 AAATACCGAC
12547 TGAGAGGCTCGTGATCG-ACTCCTGAT
1 TGAGAGGCTCGTGATCGAACTCCTGAT
* *
12573 TGAGAGGCTCGTGATTGAAACTCTTGAT
1 TGAGAGGCTCGTGATCG-AACTCCTGAT
12601 TGAGAG
1 TGAGAG
12607 ACTCTTGACT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
26 16 0.53
28 14 0.47
ACGTcount: A:0.23, C:0.17, G:0.32, T:0.28
Consensus pattern (27 bp):
TGAGAGGCTCGTGATCGAACTCCTGAT
Left flanking sequence: Indices 12047 -- 12546
AATATAGCAAAATACCTCTGGGTAACACCATCGGGTGCTCTACAGTGCTGTTGTAGCCCGGAGGC
TCGTGTCATTAGTAACGTCTATGTAACCGTGTCAAAAGAAACCGCAACGGATGCCGGCGCTAGCC
GCGATGACATGCGTCGATCAATGCAATGGCGAGATAATTTTCGAGCCAGGCTGCCGGGCGCCTAT
TGTGGCTGCACGATGGCAGGCGGGACGGTGGCTAGTGGTCCAGTGGTGGTTTGAAGGCATTCAGA
GATTTTTTCTGATGGCCTTGGTGGCTAGCCATCTGGTGTAGTTGCTAGCCATCTGGTGGCAGTTG
GTAGGGTTGGCCCATTAGGAGTTACTCAAAGGGGAAACTCCCAAAGTGGACTCCCAAAGTCTCCC
AAAGTGGACTCCCAAAGTGGACTCCCAAAGTGGACTCCCAAAGTGGGTAACTTAGGGATGTAGCA
GTCACACTAGCATTTCCTCGGTGTTAGCATATGCAAAATACCGAC
Right flanking sequence: Indices 12607 -- 13106
ACTCTTGACTGAGAGCACTGACTACCGAAACCATCTCTGGAATCCAGTGATGATTATCTAAGCAA
GCCAGTGAGCAAACCGGTGAGCAAAGCAGTGAGCAAAGCAGTGAGCAAAGCCAGGGAGAAAGCCA
GGAAGAAGCCAGGGAATCCTAGTAGTAGCGTCCATAAGAGTGTGTCAACCTTGTAAACCACTTCT
TTACCCCTAATACTAGCGTCCACCAGTGTGAACCTCATCTCTACCCAAAGTAGTATACCTCAACC
TTGTACACCACTTCTCTACCCCTAGTAGCTTCCACCAGTGTAAACCACGTCTCTAACCCTACCAG
ACCCTTATTGAACCCCTATCCTTCGTCCCCTACTCAAGTAAATGGGCCAGGTTTTCTTCCCTACT
CCAACAAATGAGCCAGGTTCTCGAGAAACTGAATATGCGCCTCAATGTCCCGACACAACTTCTCC
CGGTCCACAAACTGATAGTACGCCAAGTTGATCTTGTCCACACAC
Found at i:12602 original size:13 final size:15
Alignment explanation
Indices: 12563--12621 Score: 68
Period size: 15 Copynumber: 4.1 Consensus size: 15
12553 GCTCGTGATC
*
12563 GACTCCTGATTGAGA
1 GACTCTTGATTGAGA
* *
12578 GGCTCGTGATTGA-A
1 GACTCTTGATTGAGA
12592 -ACTCTTGATTGAGA
1 GACTCTTGATTGAGA
*
12606 GACTCTTGACTGAGA
1 GACTCTTGATTGAGA
12621 G
1 G
12622 CACTGACTAC
Statistics
Matches: 37, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
13 10 0.27
14 2 0.05
15 25 0.68
ACGTcount: A:0.25, C:0.17, G:0.29, T:0.29
Consensus pattern (15 bp):
GACTCTTGATTGAGA
Left flanking sequence: Indices 12063 -- 12562
TCTGGGTAACACCATCGGGTGCTCTACAGTGCTGTTGTAGCCCGGAGGCTCGTGTCATTAGTAAC
GTCTATGTAACCGTGTCAAAAGAAACCGCAACGGATGCCGGCGCTAGCCGCGATGACATGCGTCG
ATCAATGCAATGGCGAGATAATTTTCGAGCCAGGCTGCCGGGCGCCTATTGTGGCTGCACGATGG
CAGGCGGGACGGTGGCTAGTGGTCCAGTGGTGGTTTGAAGGCATTCAGAGATTTTTTCTGATGGC
CTTGGTGGCTAGCCATCTGGTGTAGTTGCTAGCCATCTGGTGGCAGTTGGTAGGGTTGGCCCATT
AGGAGTTACTCAAAGGGGAAACTCCCAAAGTGGACTCCCAAAGTCTCCCAAAGTGGACTCCCAAA
GTGGACTCCCAAAGTGGACTCCCAAAGTGGGTAACTTAGGGATGTAGCAGTCACACTAGCATTTC
CTCGGTGTTAGCATATGCAAAATACCGACTGAGAGGCTCGTGATC
Right flanking sequence: Indices 12622 -- 13121
CACTGACTACCGAAACCATCTCTGGAATCCAGTGATGATTATCTAAGCAAGCCAGTGAGCAAACC
GGTGAGCAAAGCAGTGAGCAAAGCAGTGAGCAAAGCCAGGGAGAAAGCCAGGAAGAAGCCAGGGA
ATCCTAGTAGTAGCGTCCATAAGAGTGTGTCAACCTTGTAAACCACTTCTTTACCCCTAATACTA
GCGTCCACCAGTGTGAACCTCATCTCTACCCAAAGTAGTATACCTCAACCTTGTACACCACTTCT
CTACCCCTAGTAGCTTCCACCAGTGTAAACCACGTCTCTAACCCTACCAGACCCTTATTGAACCC
CTATCCTTCGTCCCCTACTCAAGTAAATGGGCCAGGTTTTCTTCCCTACTCCAACAAATGAGCCA
GGTTCTCGAGAAACTGAATATGCGCCTCAATGTCCCGACACAACTTCTCCCGGTCCACAAACTGA
TAGTACGCCAAGTTGATCTTGTCCACACACAAGAACTGCCGCATA
Found at i:12691 original size:12 final size:12
Alignment explanation
Indices: 12674--12722 Score: 80
Period size: 12 Copynumber: 4.1 Consensus size: 12
12664 CTAAGCAAGC
*
12674 CAGTGAGCAAAC
1 CAGTGAGCAAAG
*
12686 CGGTGAGCAAAG
1 CAGTGAGCAAAG
12698 CAGTGAGCAAAG
1 CAGTGAGCAAAG
12710 CAGTGAGCAAAG
1 CAGTGAGCAAAG
12722 C
1 C
12723 CAGGGAGAAA
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
12 34 1.00
ACGTcount: A:0.39, C:0.20, G:0.33, T:0.08
Consensus pattern (12 bp):
CAGTGAGCAAAG
Left flanking sequence: Indices 12174 -- 12673
GCCGCGATGACATGCGTCGATCAATGCAATGGCGAGATAATTTTCGAGCCAGGCTGCCGGGCGCC
TATTGTGGCTGCACGATGGCAGGCGGGACGGTGGCTAGTGGTCCAGTGGTGGTTTGAAGGCATTC
AGAGATTTTTTCTGATGGCCTTGGTGGCTAGCCATCTGGTGTAGTTGCTAGCCATCTGGTGGCAG
TTGGTAGGGTTGGCCCATTAGGAGTTACTCAAAGGGGAAACTCCCAAAGTGGACTCCCAAAGTCT
CCCAAAGTGGACTCCCAAAGTGGACTCCCAAAGTGGACTCCCAAAGTGGGTAACTTAGGGATGTA
GCAGTCACACTAGCATTTCCTCGGTGTTAGCATATGCAAAATACCGACTGAGAGGCTCGTGATCG
ACTCCTGATTGAGAGGCTCGTGATTGAAACTCTTGATTGAGAGACTCTTGACTGAGAGCACTGAC
TACCGAAACCATCTCTGGAATCCAGTGATGATTATCTAAGCAAGC
Right flanking sequence: Indices 12723 -- 13222
CAGGGAGAAAGCCAGGAAGAAGCCAGGGAATCCTAGTAGTAGCGTCCATAAGAGTGTGTCAACCT
TGTAAACCACTTCTTTACCCCTAATACTAGCGTCCACCAGTGTGAACCTCATCTCTACCCAAAGT
AGTATACCTCAACCTTGTACACCACTTCTCTACCCCTAGTAGCTTCCACCAGTGTAAACCACGTC
TCTAACCCTACCAGACCCTTATTGAACCCCTATCCTTCGTCCCCTACTCAAGTAAATGGGCCAGG
TTTTCTTCCCTACTCCAACAAATGAGCCAGGTTCTCGAGAAACTGAATATGCGCCTCAATGTCCC
GACACAACTTCTCCCGGTCCACAAACTGATAGTACGCCAAGTTGATCTTGTCCACACACAAGAAC
TGCCGCATATTGCCCCAGTTGACCATCTCAAAGTCGTACCCGGCCCGCACCCGCATCCCGGTGCC
GTACATACGCACCCGTTCCCCACCCGAGTTGAAAATCTTACGCTC
Found at i:12733 original size:12 final size:12
Alignment explanation
Indices: 12718--12751 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
12708 AGCAGTGAGC
12718 AAAGCCAGGGAG
1 AAAGCCAGGGAG
*
12730 AAAGCCAGGAAG
1 AAAGCCAGGGAG
12742 -AAGCCAGGGA
1 AAAGCCAGGGA
12752 ATCCTAGTAG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
11 9 0.45
12 11 0.55
ACGTcount: A:0.44, C:0.18, G:0.38, T:0.00
Consensus pattern (12 bp):
AAAGCCAGGGAG
Left flanking sequence: Indices 12218 -- 12717
CGAGCCAGGCTGCCGGGCGCCTATTGTGGCTGCACGATGGCAGGCGGGACGGTGGCTAGTGGTCC
AGTGGTGGTTTGAAGGCATTCAGAGATTTTTTCTGATGGCCTTGGTGGCTAGCCATCTGGTGTAG
TTGCTAGCCATCTGGTGGCAGTTGGTAGGGTTGGCCCATTAGGAGTTACTCAAAGGGGAAACTCC
CAAAGTGGACTCCCAAAGTCTCCCAAAGTGGACTCCCAAAGTGGACTCCCAAAGTGGACTCCCAA
AGTGGGTAACTTAGGGATGTAGCAGTCACACTAGCATTTCCTCGGTGTTAGCATATGCAAAATAC
CGACTGAGAGGCTCGTGATCGACTCCTGATTGAGAGGCTCGTGATTGAAACTCTTGATTGAGAGA
CTCTTGACTGAGAGCACTGACTACCGAAACCATCTCTGGAATCCAGTGATGATTATCTAAGCAAG
CCAGTGAGCAAACCGGTGAGCAAAGCAGTGAGCAAAGCAGTGAGC
Right flanking sequence: Indices 12752 -- 13251
ATCCTAGTAGTAGCGTCCATAAGAGTGTGTCAACCTTGTAAACCACTTCTTTACCCCTAATACTA
GCGTCCACCAGTGTGAACCTCATCTCTACCCAAAGTAGTATACCTCAACCTTGTACACCACTTCT
CTACCCCTAGTAGCTTCCACCAGTGTAAACCACGTCTCTAACCCTACCAGACCCTTATTGAACCC
CTATCCTTCGTCCCCTACTCAAGTAAATGGGCCAGGTTTTCTTCCCTACTCCAACAAATGAGCCA
GGTTCTCGAGAAACTGAATATGCGCCTCAATGTCCCGACACAACTTCTCCCGGTCCACAAACTGA
TAGTACGCCAAGTTGATCTTGTCCACACACAAGAACTGCCGCATATTGCCCCAGTTGACCATCTC
AAAGTCGTACCCGGCCCGCACCCGCATCCCGGTGCCGTACATACGCACCCGTTCCCCACCCGAGT
TGAAAATCTTACGCTCCTTCTTGAGCACGTAGGGATCGAGCTTCG
Found at i:12733 original size:24 final size:25
Alignment explanation
Indices: 12670--12734 Score: 89
Period size: 24 Copynumber: 2.7 Consensus size: 25
12660 TTATCTAAGC
* *
12670 AAGCCAGTGAGCAAACCGGTGAGCA
1 AAGCCAGTGAGCAAAGCAGTGAGCA
12695 AAG-CAGTGAGCAAAGCAGTGAGCA
1 AAGCCAGTGAGCAAAGCAGTGAGCA
*
12719 AAGCCAGGGAG-AAAGC
1 AAGCCAGTGAGCAAAGC
12735 CAGGAAGAAG
Statistics
Matches: 36, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
24 27 0.75
25 9 0.25
ACGTcount: A:0.40, C:0.20, G:0.34, T:0.06
Consensus pattern (25 bp):
AAGCCAGTGAGCAAAGCAGTGAGCA
Left flanking sequence: Indices 12170 -- 12669
GCTAGCCGCGATGACATGCGTCGATCAATGCAATGGCGAGATAATTTTCGAGCCAGGCTGCCGGG
CGCCTATTGTGGCTGCACGATGGCAGGCGGGACGGTGGCTAGTGGTCCAGTGGTGGTTTGAAGGC
ATTCAGAGATTTTTTCTGATGGCCTTGGTGGCTAGCCATCTGGTGTAGTTGCTAGCCATCTGGTG
GCAGTTGGTAGGGTTGGCCCATTAGGAGTTACTCAAAGGGGAAACTCCCAAAGTGGACTCCCAAA
GTCTCCCAAAGTGGACTCCCAAAGTGGACTCCCAAAGTGGACTCCCAAAGTGGGTAACTTAGGGA
TGTAGCAGTCACACTAGCATTTCCTCGGTGTTAGCATATGCAAAATACCGACTGAGAGGCTCGTG
ATCGACTCCTGATTGAGAGGCTCGTGATTGAAACTCTTGATTGAGAGACTCTTGACTGAGAGCAC
TGACTACCGAAACCATCTCTGGAATCCAGTGATGATTATCTAAGC
Right flanking sequence: Indices 12735 -- 13234
CAGGAAGAAGCCAGGGAATCCTAGTAGTAGCGTCCATAAGAGTGTGTCAACCTTGTAAACCACTT
CTTTACCCCTAATACTAGCGTCCACCAGTGTGAACCTCATCTCTACCCAAAGTAGTATACCTCAA
CCTTGTACACCACTTCTCTACCCCTAGTAGCTTCCACCAGTGTAAACCACGTCTCTAACCCTACC
AGACCCTTATTGAACCCCTATCCTTCGTCCCCTACTCAAGTAAATGGGCCAGGTTTTCTTCCCTA
CTCCAACAAATGAGCCAGGTTCTCGAGAAACTGAATATGCGCCTCAATGTCCCGACACAACTTCT
CCCGGTCCACAAACTGATAGTACGCCAAGTTGATCTTGTCCACACACAAGAACTGCCGCATATTG
CCCCAGTTGACCATCTCAAAGTCGTACCCGGCCCGCACCCGCATCCCGGTGCCGTACATACGCAC
CCGTTCCCCACCCGAGTTGAAAATCTTACGCTCCTTCTTGAGCAC
Found at i:15078 original size:8 final size:9
Alignment explanation
Indices: 15058--15094 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
15048 ATATGGGGTA
*
15058 GGGGTAACG
1 GGGGTGACG
15067 GGGGTGACG
1 GGGGTGACG
15076 GGGGTGACG
1 GGGGTGACG
15085 GGGGTGACG
1 GGGGTGACG
15094 G
1 G
15095 AAGGGTGGGA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
9 27 1.00
ACGTcount: A:0.14, C:0.11, G:0.65, T:0.11
Consensus pattern (9 bp):
GGGGTGACG
Left flanking sequence: Indices 14558 -- 15057
GAACGCCGGAGCGGACCGGAAGAGCGCGAGCACCAGGAGGGTTGCGATGACCACGAGGCCCAACA
CGAGGTGCCGGACACGCGCTCGGCGGCCGAGGAGCCGCAGCTTCGCCACACACGCCAGAAGCACC
ATCGAGAACGCTGGGACTGGGGTTGTTCGACGTGTGACTGGTCGCTGGGTGAAAAAGTGGGCTAT
ATGTAGGCCGATGCAGGGCGTCTGCGGGCGCTGACTAGATCGGGAGGCGACATTGTTAGATCGGG
CGGGAAGGCGCGGTCGCGGGGCGCAGGACGCGTCGGGCGGGGTCCACGGGTTAGGGAGGTGGGTT
AGGGGAGGTAGGGGTGGGACAGGGGGGTGGTGCTTTGGGATAGGTGGCGTGCTTCTGGAACGCTT
ACGTGAGCACTCCGCGTTTTCGCTCGAAGAAACGCGTCTCGTTTCAGTTCTATTTTTATGTGGGG
TGAGGTAAGCGGTTAGGTAAGCACGTCAGGTGGAAATATGGGGTA
Right flanking sequence: Indices 15095 -- 15594
AAGGGTGGGAGGTGGACGAGATGAGAAGTGGAGAGATGAGAAGGATGAGGTGAGAAGGGACGAGG
AGCGAGGAGGGTGGGTTGGAGATATGGGGGAAGGGGGGTGGTGGCAAGTAGATTGCGGATGGTAG
GATTTGCGTATTGTTAGTGCTTGGTTGTGATAATGGTTGTGCTTATAATGTTGATTCAGAGGTGG
TTCGCAGCCGTGCATCGACTTTGTGGCGGTCTCGGCCATTGTCTTGTCGAAGCGAGCCTCGGGGG
GTCGCGGAACCTTCTTCTGTGATAATAGAAGGTGGCTCGGGCTCGAGGGGCTTGAGGGCTACCGT
GCAACCTTGCCAAGAAACTACTCAGGGCCACGGGCCCGCCGCAACTGGCCCACCGCAACTGTCAC
TACAGAACATAGGCTATTGTTTCGCCCATCATTGTTGCTTTCTTGGAAGTTTCAGATCGACGCCA
TTGACGCATTGACGCCATTGAGCCATTGAGCCATTGCGCCATTGT
Found at i:15132 original size:15 final size:16
Alignment explanation
Indices: 15106--15158 Score: 60
Period size: 15 Copynumber: 3.6 Consensus size: 16
15096 AGGGTGGGAG
15106 GTGGACGAGATGAGAA
1 GTGGACGAGATGAGAA
15122 GTGGA-GAGATGAGAA
1 GTGGACGAGATGAGAA
* *
15137 --GGATGAGGTGAGAA
1 GTGGACGAGATGAGAA
15151 G-GGACGAG
1 GTGGACGAG
15159 GAGCGAGGAG
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
13 3 0.09
14 9 0.27
15 16 0.48
16 5 0.15
ACGTcount: A:0.36, C:0.04, G:0.49, T:0.11
Consensus pattern (16 bp):
GTGGACGAGATGAGAA
Left flanking sequence: Indices 14606 -- 15105
GACCACGAGGCCCAACACGAGGTGCCGGACACGCGCTCGGCGGCCGAGGAGCCGCAGCTTCGCCA
CACACGCCAGAAGCACCATCGAGAACGCTGGGACTGGGGTTGTTCGACGTGTGACTGGTCGCTGG
GTGAAAAAGTGGGCTATATGTAGGCCGATGCAGGGCGTCTGCGGGCGCTGACTAGATCGGGAGGC
GACATTGTTAGATCGGGCGGGAAGGCGCGGTCGCGGGGCGCAGGACGCGTCGGGCGGGGTCCACG
GGTTAGGGAGGTGGGTTAGGGGAGGTAGGGGTGGGACAGGGGGGTGGTGCTTTGGGATAGGTGGC
GTGCTTCTGGAACGCTTACGTGAGCACTCCGCGTTTTCGCTCGAAGAAACGCGTCTCGTTTCAGT
TCTATTTTTATGTGGGGTGAGGTAAGCGGTTAGGTAAGCACGTCAGGTGGAAATATGGGGTAGGG
GTAACGGGGGTGACGGGGGTGACGGGGGTGACGGAAGGGTGGGAG
Right flanking sequence: Indices 15159 -- 15658
GAGCGAGGAGGGTGGGTTGGAGATATGGGGGAAGGGGGGTGGTGGCAAGTAGATTGCGGATGGTA
GGATTTGCGTATTGTTAGTGCTTGGTTGTGATAATGGTTGTGCTTATAATGTTGATTCAGAGGTG
GTTCGCAGCCGTGCATCGACTTTGTGGCGGTCTCGGCCATTGTCTTGTCGAAGCGAGCCTCGGGG
GGTCGCGGAACCTTCTTCTGTGATAATAGAAGGTGGCTCGGGCTCGAGGGGCTTGAGGGCTACCG
TGCAACCTTGCCAAGAAACTACTCAGGGCCACGGGCCCGCCGCAACTGGCCCACCGCAACTGTCA
CTACAGAACATAGGCTATTGTTTCGCCCATCATTGTTGCTTTCTTGGAAGTTTCAGATCGACGCC
ATTGACGCATTGACGCCATTGAGCCATTGAGCCATTGCGCCATTGTTGTGCCACCGTTAGAGTTT
GATTGGTCAGATTGGAGATGGTGCGGTGGGGTGGTGGGGTGGCAA
Found at i:15561 original size:8 final size:9
Alignment explanation
Indices: 15543--15593 Score: 74
Period size: 8 Copynumber: 6.1 Consensus size: 9
15533 GTTTCAGATC
15543 GACGCCATT
1 GACGCCATT
15552 GACG-CATT
1 GACGCCATT
15560 GACGCCATT
1 GACGCCATT
15569 GA-GCCATT
1 GACGCCATT
15577 GA-GCCATT
1 GACGCCATT
15585 G-CGCCATT
1 GACGCCATT
15593 G
1 G
15594 TTGTGCCACC
Statistics
Matches: 40, Mismatches: 0, Indels: 5
0.89 0.00 0.11
Matches are distributed among these distances:
8 30 0.75
9 10 0.25
ACGTcount: A:0.22, C:0.29, G:0.25, T:0.24
Consensus pattern (9 bp):
GACGCCATT
Left flanking sequence: Indices 15043 -- 15542
TGGAAATATGGGGTAGGGGTAACGGGGGTGACGGGGGTGACGGGGGTGACGGAAGGGTGGGAGGT
GGACGAGATGAGAAGTGGAGAGATGAGAAGGATGAGGTGAGAAGGGACGAGGAGCGAGGAGGGTG
GGTTGGAGATATGGGGGAAGGGGGGTGGTGGCAAGTAGATTGCGGATGGTAGGATTTGCGTATTG
TTAGTGCTTGGTTGTGATAATGGTTGTGCTTATAATGTTGATTCAGAGGTGGTTCGCAGCCGTGC
ATCGACTTTGTGGCGGTCTCGGCCATTGTCTTGTCGAAGCGAGCCTCGGGGGGTCGCGGAACCTT
CTTCTGTGATAATAGAAGGTGGCTCGGGCTCGAGGGGCTTGAGGGCTACCGTGCAACCTTGCCAA
GAAACTACTCAGGGCCACGGGCCCGCCGCAACTGGCCCACCGCAACTGTCACTACAGAACATAGG
CTATTGTTTCGCCCATCATTGTTGCTTTCTTGGAAGTTTCAGATC
Right flanking sequence: Indices 15594 -- 16093
TTGTGCCACCGTTAGAGTTTGATTGGTCAGATTGGAGATGGTGCGGTGGGGTGGTGGGGTGGCAA
GTGGTGGGGTGGTAGTGGTGGGGTAAAAATAGTACAACAACGGGTTAGTAAACAGGTAAGAGTAA
ACAGGTTAAACGAGTAAGAGAGTTGTCCTAAGTGGTTCGGTTAGACGGGAAGGTGGGACCATCGC
TATTGTTCAGAACAAGAACAAAGCGGCTCAGCAACGCGGCGATGGCAGCAATGCGGCGAAAGCGA
TGACACGGCGATGCGCGGTGATCAACGCGCTATTGATGCGGTGGGAGTTGTGTTGCTACAGGTTA
CTGGTGACGCGTTCTGTTGTCAAGGGGATTAGATCAAATTGAATTAAAGATGAAGCGAATTAAAG
ATTAACTGAATAAAGATTAACTGAATATAAGGTAGTAATGAAAAATGGACGTTAATTGTGTGGTA
GTTCTTTGAAAATAATAAGAGTTTTTCTGGCTATGAAGCCTTGTT
Found at i:15584 original size:16 final size:17
Alignment explanation
Indices: 15543--15593 Score: 70
Period size: 17 Copynumber: 3.1 Consensus size: 17
15533 GTTTCAGATC
15543 GACGCCATTGA-CGCATT
1 GACGCCATTGAGC-CATT
15560 GACGCCATTGAGCCATT
1 GACGCCATTGAGCCATT
*
15577 GA-GCCATTGCGCCATT
1 GACGCCATTGAGCCATT
15593 G
1 G
15594 TTGTGCCACC
Statistics
Matches: 32, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
16 14 0.44
17 17 0.53
18 1 0.03
ACGTcount: A:0.22, C:0.29, G:0.25, T:0.24
Consensus pattern (17 bp):
GACGCCATTGAGCCATT
Left flanking sequence: Indices 15043 -- 15542
TGGAAATATGGGGTAGGGGTAACGGGGGTGACGGGGGTGACGGGGGTGACGGAAGGGTGGGAGGT
GGACGAGATGAGAAGTGGAGAGATGAGAAGGATGAGGTGAGAAGGGACGAGGAGCGAGGAGGGTG
GGTTGGAGATATGGGGGAAGGGGGGTGGTGGCAAGTAGATTGCGGATGGTAGGATTTGCGTATTG
TTAGTGCTTGGTTGTGATAATGGTTGTGCTTATAATGTTGATTCAGAGGTGGTTCGCAGCCGTGC
ATCGACTTTGTGGCGGTCTCGGCCATTGTCTTGTCGAAGCGAGCCTCGGGGGGTCGCGGAACCTT
CTTCTGTGATAATAGAAGGTGGCTCGGGCTCGAGGGGCTTGAGGGCTACCGTGCAACCTTGCCAA
GAAACTACTCAGGGCCACGGGCCCGCCGCAACTGGCCCACCGCAACTGTCACTACAGAACATAGG
CTATTGTTTCGCCCATCATTGTTGCTTTCTTGGAAGTTTCAGATC
Right flanking sequence: Indices 15594 -- 16093
TTGTGCCACCGTTAGAGTTTGATTGGTCAGATTGGAGATGGTGCGGTGGGGTGGTGGGGTGGCAA
GTGGTGGGGTGGTAGTGGTGGGGTAAAAATAGTACAACAACGGGTTAGTAAACAGGTAAGAGTAA
ACAGGTTAAACGAGTAAGAGAGTTGTCCTAAGTGGTTCGGTTAGACGGGAAGGTGGGACCATCGC
TATTGTTCAGAACAAGAACAAAGCGGCTCAGCAACGCGGCGATGGCAGCAATGCGGCGAAAGCGA
TGACACGGCGATGCGCGGTGATCAACGCGCTATTGATGCGGTGGGAGTTGTGTTGCTACAGGTTA
CTGGTGACGCGTTCTGTTGTCAAGGGGATTAGATCAAATTGAATTAAAGATGAAGCGAATTAAAG
ATTAACTGAATAAAGATTAACTGAATATAAGGTAGTAATGAAAAATGGACGTTAATTGTGTGGTA
GTTCTTTGAAAATAATAAGAGTTTTTCTGGCTATGAAGCCTTGTT
Found at i:15677 original size:14 final size:15
Alignment explanation
Indices: 15644--15682 Score: 62
Period size: 15 Copynumber: 2.7 Consensus size: 15
15634 GTGCGGTGGG
15644 GTGGTGGGGTGGCAA
1 GTGGTGGGGTGGCAA
*
15659 GTGGTGGGGTGG-TA
1 GTGGTGGGGTGGCAA
15673 GTGGTGGGGT
1 GTGGTGGGGT
15683 AAAAATAGTA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
14 11 0.48
15 12 0.52
ACGTcount: A:0.08, C:0.03, G:0.64, T:0.26
Consensus pattern (15 bp):
GTGGTGGGGTGGCAA
Left flanking sequence: Indices 15144 -- 15643
GTGAGAAGGGACGAGGAGCGAGGAGGGTGGGTTGGAGATATGGGGGAAGGGGGGTGGTGGCAAGT
AGATTGCGGATGGTAGGATTTGCGTATTGTTAGTGCTTGGTTGTGATAATGGTTGTGCTTATAAT
GTTGATTCAGAGGTGGTTCGCAGCCGTGCATCGACTTTGTGGCGGTCTCGGCCATTGTCTTGTCG
AAGCGAGCCTCGGGGGGTCGCGGAACCTTCTTCTGTGATAATAGAAGGTGGCTCGGGCTCGAGGG
GCTTGAGGGCTACCGTGCAACCTTGCCAAGAAACTACTCAGGGCCACGGGCCCGCCGCAACTGGC
CCACCGCAACTGTCACTACAGAACATAGGCTATTGTTTCGCCCATCATTGTTGCTTTCTTGGAAG
TTTCAGATCGACGCCATTGACGCATTGACGCCATTGAGCCATTGAGCCATTGCGCCATTGTTGTG
CCACCGTTAGAGTTTGATTGGTCAGATTGGAGATGGTGCGGTGGG
Right flanking sequence: Indices 15683 -- 16182
AAAAATAGTACAACAACGGGTTAGTAAACAGGTAAGAGTAAACAGGTTAAACGAGTAAGAGAGTT
GTCCTAAGTGGTTCGGTTAGACGGGAAGGTGGGACCATCGCTATTGTTCAGAACAAGAACAAAGC
GGCTCAGCAACGCGGCGATGGCAGCAATGCGGCGAAAGCGATGACACGGCGATGCGCGGTGATCA
ACGCGCTATTGATGCGGTGGGAGTTGTGTTGCTACAGGTTACTGGTGACGCGTTCTGTTGTCAAG
GGGATTAGATCAAATTGAATTAAAGATGAAGCGAATTAAAGATTAACTGAATAAAGATTAACTGA
ATATAAGGTAGTAATGAAAAATGGACGTTAATTGTGTGGTAGTTCTTTGAAAATAATAAGAGTTT
TTCTGGCTATGAAGCCTTGTTTTCAACTCATCAGTGCCTTCTTCCGAGCCATATTTGTAGCAATA
AGTGAAAAGCGTTTAAAATCGTTATGTCAATTTAGCAAAACCCTT
Found at i:15994 original size:16 final size:16
Alignment explanation
Indices: 15958--16009 Score: 72
Period size: 15 Copynumber: 3.3 Consensus size: 16
15948 TAGATCAAAT
*
15958 TGAATTAAAGATGAAGC
1 TGAATTAAAGATTAA-C
15975 -GAATTAAAGATTAAC
1 TGAATTAAAGATTAAC
15990 TGAA-TAAAGATTAAC
1 TGAATTAAAGATTAAC
16005 TGAAT
1 TGAAT
16010 ATAAGGTAGT
Statistics
Matches: 32, Mismatches: 1, Indels: 5
0.84 0.03 0.13
Matches are distributed among these distances:
15 16 0.50
16 16 0.50
ACGTcount: A:0.50, C:0.06, G:0.17, T:0.27
Consensus pattern (16 bp):
TGAATTAAAGATTAAC
Left flanking sequence: Indices 15458 -- 15957
CCGCAACTGGCCCACCGCAACTGTCACTACAGAACATAGGCTATTGTTTCGCCCATCATTGTTGC
TTTCTTGGAAGTTTCAGATCGACGCCATTGACGCATTGACGCCATTGAGCCATTGAGCCATTGCG
CCATTGTTGTGCCACCGTTAGAGTTTGATTGGTCAGATTGGAGATGGTGCGGTGGGGTGGTGGGG
TGGCAAGTGGTGGGGTGGTAGTGGTGGGGTAAAAATAGTACAACAACGGGTTAGTAAACAGGTAA
GAGTAAACAGGTTAAACGAGTAAGAGAGTTGTCCTAAGTGGTTCGGTTAGACGGGAAGGTGGGAC
CATCGCTATTGTTCAGAACAAGAACAAAGCGGCTCAGCAACGCGGCGATGGCAGCAATGCGGCGA
AAGCGATGACACGGCGATGCGCGGTGATCAACGCGCTATTGATGCGGTGGGAGTTGTGTTGCTAC
AGGTTACTGGTGACGCGTTCTGTTGTCAAGGGGATTAGATCAAAT
Right flanking sequence: Indices 16010 -- 16509
ATAAGGTAGTAATGAAAAATGGACGTTAATTGTGTGGTAGTTCTTTGAAAATAATAAGAGTTTTT
CTGGCTATGAAGCCTTGTTTTCAACTCATCAGTGCCTTCTTCCGAGCCATATTTGTAGCAATAAG
TGAAAAGCGTTTAAAATCGTTATGTCAATTTAGCAAAACCCTTGACACGGGCTACTTGTTGCAGT
GTGTTACTGACAGCGACCTGGCCACCCGTAGAAGTGTATTTGATGCCATATGAGTGTCTGATGCC
GTAGTAATGTTTGATGCCGCAGGAGTGAACTTTTATGCCTTCCTTCACCCCTCGGCGTATTCCTT
GCATTTCTAAGCCATTGCGCTCCTGAGCTACTCAAAAAATTGAACCAGCCCCGTTAAGCCCTTCC
AGAGTCAGAAAGAGTCTTTGTGCCTACCCTCCGCGTCCGTGCCTTCCCTTTCGTGCCTCCCTTCC
CTTCCCCCCTTCCCTTTTCGGTCGTCCGCTGCACACCTTCGTAAA
Found at i:17964 original size:11 final size:11
Alignment explanation
Indices: 17919--17986 Score: 52
Period size: 11 Copynumber: 6.2 Consensus size: 11
17909 AGCCGTGATG
17919 GGAGGACGGCGCA
1 GGAGGA-GGCG-A
*
17932 GG-GGAGGGGA
1 GGAGGAGGCGA
17942 GG-GTGA-GCGA
1 GGAG-GAGGCGA
*
17952 GGTGGAGGCGA
1 GGAGGAGGCGA
17963 GGAGGAGGCGA
1 GGAGGAGGCGA
* *
17974 GGGGGCGGCGA
1 GGAGGAGGCGA
17985 GG
1 GG
17987 GGGCAGCTGG
Statistics
Matches: 47, Mismatches: 5, Indels: 8
0.78 0.08 0.13
Matches are distributed among these distances:
10 11 0.23
11 31 0.66
12 3 0.06
13 2 0.04
ACGTcount: A:0.19, C:0.12, G:0.66, T:0.03
Consensus pattern (11 bp):
GGAGGAGGCGA
Left flanking sequence: Indices 17419 -- 17918
CAGCTCCAGCTGCCCGTAGGGAAGGTCCGCCAACGCGTCGTACCGCTGGTACGCCATGTCCATGT
CGATGTGGTTGGGGTAGCCCCAGCCCTCGGAAATCGTCGCGAACGTGGTAGTTCCGGTGGTGAAC
CGCGCCAGCACCAAAAAGATAAAGTCCTTGGTGAAGGGCTCGTCGTTCAAAAACGTCCAGTCGTA
GGCGTGGGCCACGCGGTCCTGGACGTTCTGGATCGTCTCCAACATGTCGTACTGGTCGCTGTTGC
GGCACAACACCACGTAGGTGGCGTTGGCGGCGGAGCCCCCCGGGCGCACCACCTCGACGGTGGTG
GTGTCGGGGAGGGCCCCCAACCAGCGCTTGAACGGGGCGCGGTCGAGCCCCTCGTCGGGGCCGCG
CGGGTGCCACTCAAACACGTGTGCGGCCACTGCACCCCACACCCACCAGCGGAGCCTCATGGGGT
GCGGAGAGGTGAAATAATATTTTCTGCAGGCGCGCAGCCGTGATG
Right flanking sequence: Indices 17987 -- 18486
GGGCAGCTGGAAGGAGGAATGGGGCAGAATCACGCCACTTTGCCAGGGCAATCCGGAGCGAAGCG
GAGAAAGAGGTGGAGGTAGAGGGGTGGAGGTGTAGGCGTAGAGGGGTAGGGGTTGGGTGGTAGTG
GTGGTGGTGGGTGGTGGTGGGTGTTGGAGTGGTAGTGATAGTAGTGGATGGTAGTGGATGGTAGT
GGTGATGATAAGGAGAGATGATGTGGTGGATTGAGCCACGTCCAGTATAACCATTGATCTGAGCT
TAGATGGACCGCCGGCTGTAGTGGAGTAATTGTCTCAATACTAATCAATTGGGGCTTACCATTAT
TGAGGCCGGTGTTCAAATCCAATTAACTAATGGAGAATGAAGCTGAGGAGTTCAAGTTACTCCTA
CTCATTGGCCATGGTTCTCGTCATGGCTCTCGTCGTGGCTCTGAGACGATTCATTGGCCATACAG
GAGATTGAGACGATTCCTTGGCCATTGTAGGCTAAATTGAATAGC
Found at i:17990 original size:11 final size:11
Alignment explanation
Indices: 17932--17989 Score: 64
Period size: 11 Copynumber: 5.4 Consensus size: 11
17922 GGACGGCGCA
*
17932 GGGGAGGGGAG
1 GGGGAGGCGAG
*
17943 GGTGA-GCGAG
1 GGGGAGGCGAG
*
17953 GTGGAGGCGAG
1 GGGGAGGCGAG
*
17964 GAGGAGGCGAG
1 GGGGAGGCGAG
*
17975 GGGGCGGCGAG
1 GGGGAGGCGAG
17986 GGGG
1 GGGG
17990 CAGCTGGAAG
Statistics
Matches: 39, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
10 7 0.18
11 32 0.82
ACGTcount: A:0.17, C:0.09, G:0.71, T:0.03
Consensus pattern (11 bp):
GGGGAGGCGAG
Left flanking sequence: Indices 17432 -- 17931
CCGTAGGGAAGGTCCGCCAACGCGTCGTACCGCTGGTACGCCATGTCCATGTCGATGTGGTTGGG
GTAGCCCCAGCCCTCGGAAATCGTCGCGAACGTGGTAGTTCCGGTGGTGAACCGCGCCAGCACCA
AAAAGATAAAGTCCTTGGTGAAGGGCTCGTCGTTCAAAAACGTCCAGTCGTAGGCGTGGGCCACG
CGGTCCTGGACGTTCTGGATCGTCTCCAACATGTCGTACTGGTCGCTGTTGCGGCACAACACCAC
GTAGGTGGCGTTGGCGGCGGAGCCCCCCGGGCGCACCACCTCGACGGTGGTGGTGTCGGGGAGGG
CCCCCAACCAGCGCTTGAACGGGGCGCGGTCGAGCCCCTCGTCGGGGCCGCGCGGGTGCCACTCA
AACACGTGTGCGGCCACTGCACCCCACACCCACCAGCGGAGCCTCATGGGGTGCGGAGAGGTGAA
ATAATATTTTCTGCAGGCGCGCAGCCGTGATGGGAGGACGGCGCA
Right flanking sequence: Indices 17990 -- 18489
CAGCTGGAAGGAGGAATGGGGCAGAATCACGCCACTTTGCCAGGGCAATCCGGAGCGAAGCGGAG
AAAGAGGTGGAGGTAGAGGGGTGGAGGTGTAGGCGTAGAGGGGTAGGGGTTGGGTGGTAGTGGTG
GTGGTGGGTGGTGGTGGGTGTTGGAGTGGTAGTGATAGTAGTGGATGGTAGTGGATGGTAGTGGT
GATGATAAGGAGAGATGATGTGGTGGATTGAGCCACGTCCAGTATAACCATTGATCTGAGCTTAG
ATGGACCGCCGGCTGTAGTGGAGTAATTGTCTCAATACTAATCAATTGGGGCTTACCATTATTGA
GGCCGGTGTTCAAATCCAATTAACTAATGGAGAATGAAGCTGAGGAGTTCAAGTTACTCCTACTC
ATTGGCCATGGTTCTCGTCATGGCTCTCGTCGTGGCTCTGAGACGATTCATTGGCCATACAGGAG
ATTGAGACGATTCCTTGGCCATTGTAGGCTAAATTGAATAGCTTC
Found at i:18131 original size:10 final size:10
Alignment explanation
Indices: 18105--18139 Score: 54
Period size: 10 Copynumber: 3.6 Consensus size: 10
18095 GGGTAGGGGT
*
18105 TGGGTGGTAG
1 TGGGTGGTGG
18115 T-GGTGGTGG
1 TGGGTGGTGG
18124 TGGGTGGTGG
1 TGGGTGGTGG
18134 TGGGTG
1 TGGGTG
18140 TTGGAGTGGT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
9 8 0.35
10 15 0.65
ACGTcount: A:0.03, C:0.00, G:0.66, T:0.31
Consensus pattern (10 bp):
TGGGTGGTGG
Left flanking sequence: Indices 17605 -- 18104
CCAGTCGTAGGCGTGGGCCACGCGGTCCTGGACGTTCTGGATCGTCTCCAACATGTCGTACTGGT
CGCTGTTGCGGCACAACACCACGTAGGTGGCGTTGGCGGCGGAGCCCCCCGGGCGCACCACCTCG
ACGGTGGTGGTGTCGGGGAGGGCCCCCAACCAGCGCTTGAACGGGGCGCGGTCGAGCCCCTCGTC
GGGGCCGCGCGGGTGCCACTCAAACACGTGTGCGGCCACTGCACCCCACACCCACCAGCGGAGCC
TCATGGGGTGCGGAGAGGTGAAATAATATTTTCTGCAGGCGCGCAGCCGTGATGGGAGGACGGCG
CAGGGGAGGGGAGGGTGAGCGAGGTGGAGGCGAGGAGGAGGCGAGGGGGCGGCGAGGGGGCAGCT
GGAAGGAGGAATGGGGCAGAATCACGCCACTTTGCCAGGGCAATCCGGAGCGAAGCGGAGAAAGA
GGTGGAGGTAGAGGGGTGGAGGTGTAGGCGTAGAGGGGTAGGGGT
Right flanking sequence: Indices 18140 -- 18639
TTGGAGTGGTAGTGATAGTAGTGGATGGTAGTGGATGGTAGTGGTGATGATAAGGAGAGATGATG
TGGTGGATTGAGCCACGTCCAGTATAACCATTGATCTGAGCTTAGATGGACCGCCGGCTGTAGTG
GAGTAATTGTCTCAATACTAATCAATTGGGGCTTACCATTATTGAGGCCGGTGTTCAAATCCAAT
TAACTAATGGAGAATGAAGCTGAGGAGTTCAAGTTACTCCTACTCATTGGCCATGGTTCTCGTCA
TGGCTCTCGTCGTGGCTCTGAGACGATTCATTGGCCATACAGGAGATTGAGACGATTCCTTGGCC
ATTGTAGGCTAAATTGAATAGCTTCGGTGGGTTACGTTGACGGTGGTGAGCCTCAGCAGCGCCAC
AGCGCTAGTCACCCCTACTCAGAGACTGTCACCGCTTGTTGGCTTGTTTGCAAATACAAAATGAA
ACCAGATCTCCTCTCTTATAAGCAATACTTTCCCATTGTTCCTGT
Found at i:18172 original size:10 final size:10
Alignment explanation
Indices: 18141--18183 Score: 61
Period size: 10 Copynumber: 4.3 Consensus size: 10
18131 TGGTGGGTGT
18141 TGGAGTGGTAG
1 TGGA-TGGTAG
*
18152 T-GATAGTAG
1 TGGATGGTAG
18161 TGGATGGTAG
1 TGGATGGTAG
18171 TGGATGGTAG
1 TGGATGGTAG
18181 TGG
1 TGG
18184 TGATGATAAG
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
9 6 0.21
10 22 0.76
11 1 0.03
ACGTcount: A:0.21, C:0.00, G:0.49, T:0.30
Consensus pattern (10 bp):
TGGATGGTAG
Left flanking sequence: Indices 17641 -- 18140
CTGGATCGTCTCCAACATGTCGTACTGGTCGCTGTTGCGGCACAACACCACGTAGGTGGCGTTGG
CGGCGGAGCCCCCCGGGCGCACCACCTCGACGGTGGTGGTGTCGGGGAGGGCCCCCAACCAGCGC
TTGAACGGGGCGCGGTCGAGCCCCTCGTCGGGGCCGCGCGGGTGCCACTCAAACACGTGTGCGGC
CACTGCACCCCACACCCACCAGCGGAGCCTCATGGGGTGCGGAGAGGTGAAATAATATTTTCTGC
AGGCGCGCAGCCGTGATGGGAGGACGGCGCAGGGGAGGGGAGGGTGAGCGAGGTGGAGGCGAGGA
GGAGGCGAGGGGGCGGCGAGGGGGCAGCTGGAAGGAGGAATGGGGCAGAATCACGCCACTTTGCC
AGGGCAATCCGGAGCGAAGCGGAGAAAGAGGTGGAGGTAGAGGGGTGGAGGTGTAGGCGTAGAGG
GGTAGGGGTTGGGTGGTAGTGGTGGTGGTGGGTGGTGGTGGGTGT
Right flanking sequence: Indices 18184 -- 18683
TGATGATAAGGAGAGATGATGTGGTGGATTGAGCCACGTCCAGTATAACCATTGATCTGAGCTTA
GATGGACCGCCGGCTGTAGTGGAGTAATTGTCTCAATACTAATCAATTGGGGCTTACCATTATTG
AGGCCGGTGTTCAAATCCAATTAACTAATGGAGAATGAAGCTGAGGAGTTCAAGTTACTCCTACT
CATTGGCCATGGTTCTCGTCATGGCTCTCGTCGTGGCTCTGAGACGATTCATTGGCCATACAGGA
GATTGAGACGATTCCTTGGCCATTGTAGGCTAAATTGAATAGCTTCGGTGGGTTACGTTGACGGT
GGTGAGCCTCAGCAGCGCCACAGCGCTAGTCACCCCTACTCAGAGACTGTCACCGCTTGTTGGCT
TGTTTGCAAATACAAAATGAAACCAGATCTCCTCTCTTATAAGCAATACTTTCCCATTGTTCCTG
TTGGCTCTTCTTTCTGTTGACTCCTCTTTCTGTTGGCTCCCATAC
Found at i:18657 original size:16 final size:16
Alignment explanation
Indices: 18636--18678 Score: 68
Period size: 16 Copynumber: 2.7 Consensus size: 16
18626 CCCATTGTTC
*
18636 CTGTTGGCTCTTCTTT
1 CTGTTGGCTCCTCTTT
*
18652 CTGTTGACTCCTCTTT
1 CTGTTGGCTCCTCTTT
18668 CTGTTGGCTCC
1 CTGTTGGCTCC
18679 CATACACCCG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.02, C:0.30, G:0.19, T:0.49
Consensus pattern (16 bp):
CTGTTGGCTCCTCTTT
Left flanking sequence: Indices 18136 -- 18635
GGTGTTGGAGTGGTAGTGATAGTAGTGGATGGTAGTGGATGGTAGTGGTGATGATAAGGAGAGAT
GATGTGGTGGATTGAGCCACGTCCAGTATAACCATTGATCTGAGCTTAGATGGACCGCCGGCTGT
AGTGGAGTAATTGTCTCAATACTAATCAATTGGGGCTTACCATTATTGAGGCCGGTGTTCAAATC
CAATTAACTAATGGAGAATGAAGCTGAGGAGTTCAAGTTACTCCTACTCATTGGCCATGGTTCTC
GTCATGGCTCTCGTCGTGGCTCTGAGACGATTCATTGGCCATACAGGAGATTGAGACGATTCCTT
GGCCATTGTAGGCTAAATTGAATAGCTTCGGTGGGTTACGTTGACGGTGGTGAGCCTCAGCAGCG
CCACAGCGCTAGTCACCCCTACTCAGAGACTGTCACCGCTTGTTGGCTTGTTTGCAAATACAAAA
TGAAACCAGATCTCCTCTCTTATAAGCAATACTTTCCCATTGTTC
Right flanking sequence: Indices 18679 -- 19178
CATACACCCGGTTGCATCTAACCAATTACGGTAGCCTTCTAACTATGAGGCAGTTACACGATGAA
AACTTTAATAGAACACCAAACTACATTCCCGGATACTACACTAGGTGGAATGGAGTCAATTACAC
TGTCGAGAGTAGAGTCTCCCAACTAACGGGCCTCTATCTAATTCCAAAACCGTATTTCCCGACTC
TTAGAACTCCCATCTACTTCAATTATCGTATTTCCTACACTTCGATCGAGTAAGAATTCCTCCAT
GCTAAGAACAAGAAATTCACAACGGTACCTTTGACCCTTGGCTTCTGACTCTCAGATCTCCCCCT
TGCAACAACCAGATCTCCCTCTTGTAAGCAACTAAACCCTCCTTTTCTTCGTCGCAAGGGCCCCC
AGCCCCAGATTGCCGTGCTACATCGTAGTAAGGGGCCCAGTCTGAAAAATCAGACACTGGCCATC
GAAATATCAGACACTGGCCGTCGAAAAATCAGACACTGGACCAGA
Found at i:19137 original size:22 final size:22
Alignment explanation
Indices: 19112--19172 Score: 104
Period size: 22 Copynumber: 2.8 Consensus size: 22
19102 GGCCCAGTCT
19112 GAAAAATCAGACACTGGCCATC
1 GAAAAATCAGACACTGGCCATC
* *
19134 GAAATATCAGACACTGGCCGTC
1 GAAAAATCAGACACTGGCCATC
19156 GAAAAATCAGACACTGG
1 GAAAAATCAGACACTGG
19173 ACCAGAACGT
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 36 1.00
ACGTcount: A:0.39, C:0.25, G:0.21, T:0.15
Consensus pattern (22 bp):
GAAAAATCAGACACTGGCCATC
Left flanking sequence: Indices 18612 -- 19111
ATAAGCAATACTTTCCCATTGTTCCTGTTGGCTCTTCTTTCTGTTGACTCCTCTTTCTGTTGGCT
CCCATACACCCGGTTGCATCTAACCAATTACGGTAGCCTTCTAACTATGAGGCAGTTACACGATG
AAAACTTTAATAGAACACCAAACTACATTCCCGGATACTACACTAGGTGGAATGGAGTCAATTAC
ACTGTCGAGAGTAGAGTCTCCCAACTAACGGGCCTCTATCTAATTCCAAAACCGTATTTCCCGAC
TCTTAGAACTCCCATCTACTTCAATTATCGTATTTCCTACACTTCGATCGAGTAAGAATTCCTCC
ATGCTAAGAACAAGAAATTCACAACGGTACCTTTGACCCTTGGCTTCTGACTCTCAGATCTCCCC
CTTGCAACAACCAGATCTCCCTCTTGTAAGCAACTAAACCCTCCTTTTCTTCGTCGCAAGGGCCC
CCAGCCCCAGATTGCCGTGCTACATCGTAGTAAGGGGCCCAGTCT
Right flanking sequence: Indices 19173 -- 19672
ACCAGAACGTGTTTGTGTCAAACTCAGATCAGACACTAGTACTACTGTCTGTCCCACTACTGTCA
GTCTTAGTACTAGTCCCAATAGAGCCCAACGTACCATAGATGACCACAGGCCCGTGGGCTCGACA
CGTTGGGTCATTATTTCACCTCACGCTGCCCGACAGCGTTCCCTGGACTTCTCACGACGCCACCT
GGTAACCGTGGCACGTCGCAGTCCAAGTTTTCACAGTGTCGTTTCACCCGTGTCTGCTCTGGTAG
TCGTAGAGTCTCCAACACCAAAAGCCACAGAGATAGAGGTATCTTCTCCATCTGTGGCCTGTTTC
TACTCCATCCAGCCCCTTCTCTACTCCATTCTGGTTCTTTCTCTACTCCATCTGGCCCTGTTTCT
ACCCTTTCTTTTTCTAGCTTTTCTTCTCGTCTCGGCTGGCTAGCCTCGATCTAAGCCCCGCGGTG
GGTGTTTCACCTGGTGACCGGTGTTTCAGCAGCCACCGCGGTCAT
Found at i:19563 original size:21 final size:20
Alignment explanation
Indices: 19478--19564 Score: 66
Period size: 21 Copynumber: 4.0 Consensus size: 20
19468 GAGGTATCTT
*
19478 CTCCATCTGTGGCCTGTTTCTA
1 CTCCATCTG-GCCCT-TTTCTA
* * *
19500 CTCCATCCAGCCCCTTCTCTA
1 CTCCAT-CTGGCCCTTTTCTA
**
19521 CTCCATTCTGGTTCTTTCTCTA
1 CTCCA-TCTGGCCCTTT-TCTA
19543 CTCCATCTGGCCCTGTTTCTA
1 CTCCATCTGGCCCT-TTTCTA
19564 C
1 C
19565 CCTTTCTTTT
Statistics
Matches: 50, Mismatches: 11, Indels: 9
0.71 0.16 0.13
Matches are distributed among these distances:
21 27 0.54
22 21 0.42
23 2 0.04
ACGTcount: A:0.10, C:0.39, G:0.11, T:0.39
Consensus pattern (20 bp):
CTCCATCTGGCCCTTTTCTA
Left flanking sequence: Indices 18978 -- 19477
GGCTTCTGACTCTCAGATCTCCCCCTTGCAACAACCAGATCTCCCTCTTGTAAGCAACTAAACCC
TCCTTTTCTTCGTCGCAAGGGCCCCCAGCCCCAGATTGCCGTGCTACATCGTAGTAAGGGGCCCA
GTCTGAAAAATCAGACACTGGCCATCGAAATATCAGACACTGGCCGTCGAAAAATCAGACACTGG
ACCAGAACGTGTTTGTGTCAAACTCAGATCAGACACTAGTACTACTGTCTGTCCCACTACTGTCA
GTCTTAGTACTAGTCCCAATAGAGCCCAACGTACCATAGATGACCACAGGCCCGTGGGCTCGACA
CGTTGGGTCATTATTTCACCTCACGCTGCCCGACAGCGTTCCCTGGACTTCTCACGACGCCACCT
GGTAACCGTGGCACGTCGCAGTCCAAGTTTTCACAGTGTCGTTTCACCCGTGTCTGCTCTGGTAG
TCGTAGAGTCTCCAACACCAAAAGCCACAGAGATAGAGGTATCTT
Right flanking sequence: Indices 19565 -- 20064
CCTTTCTTTTTCTAGCTTTTCTTCTCGTCTCGGCTGGCTAGCCTCGATCTAAGCCCCGCGGTGGG
TGTTTCACCTGGTGACCGGTGTTTCAGCAGCCACCGCGGTCATGCCTTGAGGACGTAAACAAGCC
AACCGGTGGCACAGCGGTGAAATAAGCCCAGACCTAGTCGGTAATAGTACTTTCGAAGCCCAAAC
CTAGCCAATAATACCACTTACTAAATCCAAATCTAGCCAGTAATACTACTTTTTCAAGCCAAACC
TAGCCAGTAATACCACTTTTCCAAGCCAAAACTCTCTTATCTTATCGTTGCCTTCTTTGAGTAGA
GAATTTAGCCCCACTGGTGGTCGAATAATCCCTTCTAGTGATTTAATAGTCCCCTTCTAGTAATC
TAATAGTCATACCATTCTCCGTCTTCTTCTCTCCTTTTCATCTCCCTCTCTTCTTCTCTCTCCCC
TTCCTCCCTCTCCTATTCCCGTCTTCCCCTCCCATTGTTGTCATC
Found at i:19772 original size:32 final size:31
Alignment explanation
Indices: 19718--19843 Score: 110
Period size: 32 Copynumber: 4.0 Consensus size: 31
19708 GCGGTGAAAT
* * * *
19718 AAGCCCAGACCTAGTCGGTAATAGTACTTTC
1 AAGCCCAAACCTAGCCAGTAATACTACTTTC
* * *
19749 GAAGCCCAAACCTAGCCAATAATACCACTTAC
1 -AAGCCCAAACCTAGCCAGTAATACTACTTTC
** *
19781 TAAATCCAAATCTAGCCAGTAATACTACTTTTTC
1 -AAGCCCAAACCTAGCCAGTAATACTAC--TTTC
*
19815 AAG-CCAAACCTAGCCAGTAATACCACTTT
1 AAGCCCAAACCTAGCCAGTAATACTACTTT
19844 TCCAAGCCAA
Statistics
Matches: 75, Mismatches: 17, Indels: 6
0.77 0.17 0.06
Matches are distributed among these distances:
30 3 0.04
32 67 0.89
33 2 0.03
34 3 0.04
ACGTcount: A:0.36, C:0.29, G:0.11, T:0.25
Consensus pattern (31 bp):
AAGCCCAAACCTAGCCAGTAATACTACTTTC
Left flanking sequence: Indices 19218 -- 19717
TGTCTGTCCCACTACTGTCAGTCTTAGTACTAGTCCCAATAGAGCCCAACGTACCATAGATGACC
ACAGGCCCGTGGGCTCGACACGTTGGGTCATTATTTCACCTCACGCTGCCCGACAGCGTTCCCTG
GACTTCTCACGACGCCACCTGGTAACCGTGGCACGTCGCAGTCCAAGTTTTCACAGTGTCGTTTC
ACCCGTGTCTGCTCTGGTAGTCGTAGAGTCTCCAACACCAAAAGCCACAGAGATAGAGGTATCTT
CTCCATCTGTGGCCTGTTTCTACTCCATCCAGCCCCTTCTCTACTCCATTCTGGTTCTTTCTCTA
CTCCATCTGGCCCTGTTTCTACCCTTTCTTTTTCTAGCTTTTCTTCTCGTCTCGGCTGGCTAGCC
TCGATCTAAGCCCCGCGGTGGGTGTTTCACCTGGTGACCGGTGTTTCAGCAGCCACCGCGGTCAT
GCCTTGAGGACGTAAACAAGCCAACCGGTGGCACAGCGGTGAAAT
Right flanking sequence: Indices 19844 -- 20343
TCCAAGCCAAAACTCTCTTATCTTATCGTTGCCTTCTTTGAGTAGAGAATTTAGCCCCACTGGTG
GTCGAATAATCCCTTCTAGTGATTTAATAGTCCCCTTCTAGTAATCTAATAGTCATACCATTCTC
CGTCTTCTTCTCTCCTTTTCATCTCCCTCTCTTCTTCTCTCTCCCCTTCCTCCCTCTCCTATTCC
CGTCTTCCCCTCCCATTGTTGTCATCTGACCACCACCTCCGAAAGCCGAGAAATGTCCACGGGCT
CGTCTAGGGCCTATCACCGCCTACACCGCGCAGCACCACGTTGCACCGCCTCTAAGCCACAAACG
TTCTCTCCACTTCTCTCCACTTCTCTCCACTTCTCTCCGCTTCTCCGCTTCTCCTCTTTCCTTCC
TCCCACTCTCCCCTCTGTCCTCCTCTCTCCCCCACCGCTACCCCCACCAGGCCCGATCGGGACAC
AAAGTCACCAGGTAGACCCTGGACTCCCGGCCGGGCTAGCGGGGC
Found at i:19844 original size:32 final size:32
Alignment explanation
Indices: 19745--19854 Score: 130
Period size: 32 Copynumber: 3.4 Consensus size: 32
19735 GTAATAGTAC
*
19745 TTTCGAAGCCCAAACCTAGCCAATAATACCACTT
1 TTTC-AAG-CCAAACCTAGCCAGTAATACCACTT
** * * * *
19779 ACTAAATCCAAATCTAGCCAGTAATACTACTT
1 TTTCAAGCCAAACCTAGCCAGTAATACCACTT
19811 TTTCAAGCCAAACCTAGCCAGTAATACCACTT
1 TTTCAAGCCAAACCTAGCCAGTAATACCACTT
*
19843 TTCCAAGCCAAA
1 TTTCAAGCCAAA
19855 ACTCTCTTAT
Statistics
Matches: 62, Mismatches: 14, Indels: 2
0.79 0.18 0.03
Matches are distributed among these distances:
32 59 0.95
33 2 0.03
34 1 0.02
ACGTcount: A:0.37, C:0.30, G:0.08, T:0.25
Consensus pattern (32 bp):
TTTCAAGCCAAACCTAGCCAGTAATACCACTT
Left flanking sequence: Indices 19245 -- 19744
TACTAGTCCCAATAGAGCCCAACGTACCATAGATGACCACAGGCCCGTGGGCTCGACACGTTGGG
TCATTATTTCACCTCACGCTGCCCGACAGCGTTCCCTGGACTTCTCACGACGCCACCTGGTAACC
GTGGCACGTCGCAGTCCAAGTTTTCACAGTGTCGTTTCACCCGTGTCTGCTCTGGTAGTCGTAGA
GTCTCCAACACCAAAAGCCACAGAGATAGAGGTATCTTCTCCATCTGTGGCCTGTTTCTACTCCA
TCCAGCCCCTTCTCTACTCCATTCTGGTTCTTTCTCTACTCCATCTGGCCCTGTTTCTACCCTTT
CTTTTTCTAGCTTTTCTTCTCGTCTCGGCTGGCTAGCCTCGATCTAAGCCCCGCGGTGGGTGTTT
CACCTGGTGACCGGTGTTTCAGCAGCCACCGCGGTCATGCCTTGAGGACGTAAACAAGCCAACCG
GTGGCACAGCGGTGAAATAAGCCCAGACCTAGTCGGTAATAGTAC
Right flanking sequence: Indices 19855 -- 20354
ACTCTCTTATCTTATCGTTGCCTTCTTTGAGTAGAGAATTTAGCCCCACTGGTGGTCGAATAATC
CCTTCTAGTGATTTAATAGTCCCCTTCTAGTAATCTAATAGTCATACCATTCTCCGTCTTCTTCT
CTCCTTTTCATCTCCCTCTCTTCTTCTCTCTCCCCTTCCTCCCTCTCCTATTCCCGTCTTCCCCT
CCCATTGTTGTCATCTGACCACCACCTCCGAAAGCCGAGAAATGTCCACGGGCTCGTCTAGGGCC
TATCACCGCCTACACCGCGCAGCACCACGTTGCACCGCCTCTAAGCCACAAACGTTCTCTCCACT
TCTCTCCACTTCTCTCCACTTCTCTCCGCTTCTCCGCTTCTCCTCTTTCCTTCCTCCCACTCTCC
CCTCTGTCCTCCTCTCTCCCCCACCGCTACCCCCACCAGGCCCGATCGGGACACAAAGTCACCAG
GTAGACCCTGGACTCCCGGCCGGGCTAGCGGGGCAATGGCGGCGC
Found at i:19942 original size:21 final size:21
Alignment explanation
Indices: 19913--19962 Score: 64
Period size: 22 Copynumber: 2.3 Consensus size: 21
19903 CTGGTGGTCG
* * *
19913 AATAATCCCTTCTAGTGATTT
1 AATAGTCCCTTCTAGTAATCT
19934 AATAGTCCCCTTCTAGTAATCT
1 AATAGT-CCCTTCTAGTAATCT
19956 AATAGTC
1 AATAGTC
19963 ATACCATTCT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
21 6 0.24
22 19 0.76
ACGTcount: A:0.30, C:0.22, G:0.10, T:0.38
Consensus pattern (21 bp):
AATAGTCCCTTCTAGTAATCT
Left flanking sequence: Indices 19413 -- 19912
ACCCGTGTCTGCTCTGGTAGTCGTAGAGTCTCCAACACCAAAAGCCACAGAGATAGAGGTATCTT
CTCCATCTGTGGCCTGTTTCTACTCCATCCAGCCCCTTCTCTACTCCATTCTGGTTCTTTCTCTA
CTCCATCTGGCCCTGTTTCTACCCTTTCTTTTTCTAGCTTTTCTTCTCGTCTCGGCTGGCTAGCC
TCGATCTAAGCCCCGCGGTGGGTGTTTCACCTGGTGACCGGTGTTTCAGCAGCCACCGCGGTCAT
GCCTTGAGGACGTAAACAAGCCAACCGGTGGCACAGCGGTGAAATAAGCCCAGACCTAGTCGGTA
ATAGTACTTTCGAAGCCCAAACCTAGCCAATAATACCACTTACTAAATCCAAATCTAGCCAGTAA
TACTACTTTTTCAAGCCAAACCTAGCCAGTAATACCACTTTTCCAAGCCAAAACTCTCTTATCTT
ATCGTTGCCTTCTTTGAGTAGAGAATTTAGCCCCACTGGTGGTCG
Right flanking sequence: Indices 19963 -- 20462
ATACCATTCTCCGTCTTCTTCTCTCCTTTTCATCTCCCTCTCTTCTTCTCTCTCCCCTTCCTCCC
TCTCCTATTCCCGTCTTCCCCTCCCATTGTTGTCATCTGACCACCACCTCCGAAAGCCGAGAAAT
GTCCACGGGCTCGTCTAGGGCCTATCACCGCCTACACCGCGCAGCACCACGTTGCACCGCCTCTA
AGCCACAAACGTTCTCTCCACTTCTCTCCACTTCTCTCCACTTCTCTCCGCTTCTCCGCTTCTCC
TCTTTCCTTCCTCCCACTCTCCCCTCTGTCCTCCTCTCTCCCCCACCGCTACCCCCACCAGGCCC
GATCGGGACACAAAGTCACCAGGTAGACCCTGGACTCCCGGCCGGGCTAGCGGGGCAATGGCGGC
GCGAATGACCGGGTTACGAGGCCATGGTTGCCACAGCAAAACACAGCAATCGCCTGCCGTGGTAA
CCGCTCGTGTGACCGTCCCCCTCGTGCCCCCCCCACGTTGGGGCA
Found at i:19947 original size:22 final size:22
Alignment explanation
Indices: 19919--19962 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
19909 GTCGAATAAT
* *
19919 CCCTTCTAGTGATTTAATAGTC
1 CCCTTCTAGTAATCTAATAGTC
19941 CCCTTCTAGTAATCTAATAGTC
1 CCCTTCTAGTAATCTAATAGTC
19963 ATACCATTCT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.25, C:0.25, G:0.11, T:0.39
Consensus pattern (22 bp):
CCCTTCTAGTAATCTAATAGTC
Left flanking sequence: Indices 19419 -- 19918
GTCTGCTCTGGTAGTCGTAGAGTCTCCAACACCAAAAGCCACAGAGATAGAGGTATCTTCTCCAT
CTGTGGCCTGTTTCTACTCCATCCAGCCCCTTCTCTACTCCATTCTGGTTCTTTCTCTACTCCAT
CTGGCCCTGTTTCTACCCTTTCTTTTTCTAGCTTTTCTTCTCGTCTCGGCTGGCTAGCCTCGATC
TAAGCCCCGCGGTGGGTGTTTCACCTGGTGACCGGTGTTTCAGCAGCCACCGCGGTCATGCCTTG
AGGACGTAAACAAGCCAACCGGTGGCACAGCGGTGAAATAAGCCCAGACCTAGTCGGTAATAGTA
CTTTCGAAGCCCAAACCTAGCCAATAATACCACTTACTAAATCCAAATCTAGCCAGTAATACTAC
TTTTTCAAGCCAAACCTAGCCAGTAATACCACTTTTCCAAGCCAAAACTCTCTTATCTTATCGTT
GCCTTCTTTGAGTAGAGAATTTAGCCCCACTGGTGGTCGAATAAT
Right flanking sequence: Indices 19963 -- 20462
ATACCATTCTCCGTCTTCTTCTCTCCTTTTCATCTCCCTCTCTTCTTCTCTCTCCCCTTCCTCCC
TCTCCTATTCCCGTCTTCCCCTCCCATTGTTGTCATCTGACCACCACCTCCGAAAGCCGAGAAAT
GTCCACGGGCTCGTCTAGGGCCTATCACCGCCTACACCGCGCAGCACCACGTTGCACCGCCTCTA
AGCCACAAACGTTCTCTCCACTTCTCTCCACTTCTCTCCACTTCTCTCCGCTTCTCCGCTTCTCC
TCTTTCCTTCCTCCCACTCTCCCCTCTGTCCTCCTCTCTCCCCCACCGCTACCCCCACCAGGCCC
GATCGGGACACAAAGTCACCAGGTAGACCCTGGACTCCCGGCCGGGCTAGCGGGGCAATGGCGGC
GCGAATGACCGGGTTACGAGGCCATGGTTGCCACAGCAAAACACAGCAATCGCCTGCCGTGGTAA
CCGCTCGTGTGACCGTCCCCCTCGTGCCCCCCCCACGTTGGGGCA
Found at i:20193 original size:8 final size:10
Alignment explanation
Indices: 20169--20213 Score: 81
Period size: 10 Copynumber: 4.5 Consensus size: 10
20159 GCCACAAACG
20169 TTCTCTCCAC
1 TTCTCTCCAC
20179 TTCTCTCCAC
1 TTCTCTCCAC
20189 TTCTCTCCAC
1 TTCTCTCCAC
*
20199 TTCTCTCCGC
1 TTCTCTCCAC
20209 TTCTC
1 TTCTC
20214 CGCTTCTCCT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
10 34 1.00
ACGTcount: A:0.07, C:0.49, G:0.02, T:0.42
Consensus pattern (10 bp):
TTCTCTCCAC
Left flanking sequence: Indices 19669 -- 20168
TCATGCCTTGAGGACGTAAACAAGCCAACCGGTGGCACAGCGGTGAAATAAGCCCAGACCTAGTC
GGTAATAGTACTTTCGAAGCCCAAACCTAGCCAATAATACCACTTACTAAATCCAAATCTAGCCA
GTAATACTACTTTTTCAAGCCAAACCTAGCCAGTAATACCACTTTTCCAAGCCAAAACTCTCTTA
TCTTATCGTTGCCTTCTTTGAGTAGAGAATTTAGCCCCACTGGTGGTCGAATAATCCCTTCTAGT
GATTTAATAGTCCCCTTCTAGTAATCTAATAGTCATACCATTCTCCGTCTTCTTCTCTCCTTTTC
ATCTCCCTCTCTTCTTCTCTCTCCCCTTCCTCCCTCTCCTATTCCCGTCTTCCCCTCCCATTGTT
GTCATCTGACCACCACCTCCGAAAGCCGAGAAATGTCCACGGGCTCGTCTAGGGCCTATCACCGC
CTACACCGCGCAGCACCACGTTGCACCGCCTCTAAGCCACAAACG
Right flanking sequence: Indices 20214 -- 20713
CGCTTCTCCTCTTTCCTTCCTCCCACTCTCCCCTCTGTCCTCCTCTCTCCCCCACCGCTACCCCC
ACCAGGCCCGATCGGGACACAAAGTCACCAGGTAGACCCTGGACTCCCGGCCGGGCTAGCGGGGC
AATGGCGGCGCGAATGACCGGGTTACGAGGCCATGGTTGCCACAGCAAAACACAGCAATCGCCTG
CCGTGGTAACCGCTCGTGTGACCGTCCCCCTCGTGCCCCCCCCACGTTGGGGCACACGTTGCGCA
ATGGTCTCACAACCACCCCACAAAAGGGTGGACGACGCCGTACAAAAGTAGAAAACCGTGGTAGC
AGGGACTTTCGGCCGTCCTTTCGTCGTTGTGGTTCTTGTTTTTATACGTTCTGGCCTAGTCCGTG
GTATTACTCGTGGGTCTCCTTTGCCGTGCCCCACTAAGCGCCCCCCCAGCGCCCCCCAGCGACCC
CCAGCGTCCACACCCCAAACCCGTTTGCGTAATCTAGCTCGTACC
Found at i:20660 original size:10 final size:10
Alignment explanation
Indices: 20640--20674 Score: 52
Period size: 10 Copynumber: 3.4 Consensus size: 10
20630 TGCCCCACTA
20640 AGCGCCCCCCC
1 AGCG-CCCCCC
20651 AGCGCCCCCC
1 AGCGCCCCCC
*
20661 AGCGACCCCC
1 AGCGCCCCCC
20671 AGCG
1 AGCG
20675 TCCACACCCC
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
10 19 0.83
11 4 0.17
ACGTcount: A:0.14, C:0.63, G:0.23, T:0.00
Consensus pattern (10 bp):
AGCGCCCCCC
Left flanking sequence: Indices 20140 -- 20639
CACGTTGCACCGCCTCTAAGCCACAAACGTTCTCTCCACTTCTCTCCACTTCTCTCCACTTCTCT
CCGCTTCTCCGCTTCTCCTCTTTCCTTCCTCCCACTCTCCCCTCTGTCCTCCTCTCTCCCCCACC
GCTACCCCCACCAGGCCCGATCGGGACACAAAGTCACCAGGTAGACCCTGGACTCCCGGCCGGGC
TAGCGGGGCAATGGCGGCGCGAATGACCGGGTTACGAGGCCATGGTTGCCACAGCAAAACACAGC
AATCGCCTGCCGTGGTAACCGCTCGTGTGACCGTCCCCCTCGTGCCCCCCCCACGTTGGGGCACA
CGTTGCGCAATGGTCTCACAACCACCCCACAAAAGGGTGGACGACGCCGTACAAAAGTAGAAAAC
CGTGGTAGCAGGGACTTTCGGCCGTCCTTTCGTCGTTGTGGTTCTTGTTTTTATACGTTCTGGCC
TAGTCCGTGGTATTACTCGTGGGTCTCCTTTGCCGTGCCCCACTA
Right flanking sequence: Indices 20675 -- 21174
TCCACACCCCAAACCCGTTTGCGTAATCTAGCTCGTACCCGTGTTCTCCGCCGTGTCTACGTCGA
CTTACCCCTACGACCCGGTGACTACCCCTACGACCCGGAGACTACCCTAGCCCTGAGCCCCGTGC
CCCGAGCCCCAAGCCCCGAGCCTTGAGTCCCGTGCCCCGTGCCCCGTGCCCTTCAGACAGACTTT
TCAGTGCTTGGCGTGGAATTGCTGAGCAAGCCCCCAGCCGTACAAGCCCCAGCCAAGCGACCCAG
CAAAGGGACCCAGCCAAGCGAACCAGCTTCACAAGAGCCCATTCAACACGTGCCAGACACACGCA
GAGTACGCTCGGCCTACGCTCTGGTTCCAATTTCAGCCTACAATCGTGCCAAACTACGCTCTGGC
TGACTACGGTGTACCCATCTGAACTCCGATCCACCAGTCTAGCCCAATAGTCTGGCCAAACTCTC
AGCCTGGCAAACTCTCAGCCTGGCCAACTCTCAGCCTGGCCAAAC
Found at i:20767 original size:20 final size:20
Alignment explanation
Indices: 20742--20786 Score: 81
Period size: 20 Copynumber: 2.2 Consensus size: 20
20732 TACGTCGACT
*
20742 TACCCCTACGACCCGGTGAC
1 TACCCCTACGACCCGGAGAC
20762 TACCCCTACGACCCGGAGAC
1 TACCCCTACGACCCGGAGAC
20782 TACCC
1 TACCC
20787 TAGCCCTGAG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.22, C:0.47, G:0.18, T:0.13
Consensus pattern (20 bp):
TACCCCTACGACCCGGAGAC
Left flanking sequence: Indices 20242 -- 20741
TCCCCTCTGTCCTCCTCTCTCCCCCACCGCTACCCCCACCAGGCCCGATCGGGACACAAAGTCAC
CAGGTAGACCCTGGACTCCCGGCCGGGCTAGCGGGGCAATGGCGGCGCGAATGACCGGGTTACGA
GGCCATGGTTGCCACAGCAAAACACAGCAATCGCCTGCCGTGGTAACCGCTCGTGTGACCGTCCC
CCTCGTGCCCCCCCCACGTTGGGGCACACGTTGCGCAATGGTCTCACAACCACCCCACAAAAGGG
TGGACGACGCCGTACAAAAGTAGAAAACCGTGGTAGCAGGGACTTTCGGCCGTCCTTTCGTCGTT
GTGGTTCTTGTTTTTATACGTTCTGGCCTAGTCCGTGGTATTACTCGTGGGTCTCCTTTGCCGTG
CCCCACTAAGCGCCCCCCCAGCGCCCCCCAGCGACCCCCAGCGTCCACACCCCAAACCCGTTTGC
GTAATCTAGCTCGTACCCGTGTTCTCCGCCGTGTCTACGTCGACT
Right flanking sequence: Indices 20787 -- 21286
TAGCCCTGAGCCCCGTGCCCCGAGCCCCAAGCCCCGAGCCTTGAGTCCCGTGCCCCGTGCCCCGT
GCCCTTCAGACAGACTTTTCAGTGCTTGGCGTGGAATTGCTGAGCAAGCCCCCAGCCGTACAAGC
CCCAGCCAAGCGACCCAGCAAAGGGACCCAGCCAAGCGAACCAGCTTCACAAGAGCCCATTCAAC
ACGTGCCAGACACACGCAGAGTACGCTCGGCCTACGCTCTGGTTCCAATTTCAGCCTACAATCGT
GCCAAACTACGCTCTGGCTGACTACGGTGTACCCATCTGAACTCCGATCCACCAGTCTAGCCCAA
TAGTCTGGCCAAACTCTCAGCCTGGCAAACTCTCAGCCTGGCCAACTCTCAGCCTGGCCAAACTC
TCAGCCAACCCCTGAGCCTGGCCATACCCTGACCCTGGCCATACCCTGACCCAGTCAGCCCAGCT
CACCCACCTCCCCACCCGTGTCGAGCTTCCCGGCCTCCCCTCTGC
Found at i:20806 original size:7 final size:7
Alignment explanation
Indices: 20788--20855 Score: 55
Period size: 7 Copynumber: 9.7 Consensus size: 7
20778 AGACTACCCT
*
20788 AGCCCTG
1 AGCCCCG
20795 AGCCCCG
1 AGCCCCG
*
20802 TGCCCCG
1 AGCCCCG
*
20809 AGCCCCA
1 AGCCCCG
20816 AGCCCCG
1 AGCCCCG
**
20823 AGCCTTG
1 AGCCCCG
*
20830 AGTCCCG
1 AGCCCCG
*
20837 TGCCCCG
1 AGCCCCG
*
20844 TGCCCCG
1 AGCCCCG
*
20851 TGCCC
1 AGCCC
20856 TTCAGACAGA
Statistics
Matches: 49, Mismatches: 12, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
7 49 1.00
ACGTcount: A:0.10, C:0.51, G:0.26, T:0.12
Consensus pattern (7 bp):
AGCCCCG
Left flanking sequence: Indices 20288 -- 20787
GATCGGGACACAAAGTCACCAGGTAGACCCTGGACTCCCGGCCGGGCTAGCGGGGCAATGGCGGC
GCGAATGACCGGGTTACGAGGCCATGGTTGCCACAGCAAAACACAGCAATCGCCTGCCGTGGTAA
CCGCTCGTGTGACCGTCCCCCTCGTGCCCCCCCCACGTTGGGGCACACGTTGCGCAATGGTCTCA
CAACCACCCCACAAAAGGGTGGACGACGCCGTACAAAAGTAGAAAACCGTGGTAGCAGGGACTTT
CGGCCGTCCTTTCGTCGTTGTGGTTCTTGTTTTTATACGTTCTGGCCTAGTCCGTGGTATTACTC
GTGGGTCTCCTTTGCCGTGCCCCACTAAGCGCCCCCCCAGCGCCCCCCAGCGACCCCCAGCGTCC
ACACCCCAAACCCGTTTGCGTAATCTAGCTCGTACCCGTGTTCTCCGCCGTGTCTACGTCGACTT
ACCCCTACGACCCGGTGACTACCCCTACGACCCGGAGACTACCCT
Right flanking sequence: Indices 20856 -- 21355
TTCAGACAGACTTTTCAGTGCTTGGCGTGGAATTGCTGAGCAAGCCCCCAGCCGTACAAGCCCCA
GCCAAGCGACCCAGCAAAGGGACCCAGCCAAGCGAACCAGCTTCACAAGAGCCCATTCAACACGT
GCCAGACACACGCAGAGTACGCTCGGCCTACGCTCTGGTTCCAATTTCAGCCTACAATCGTGCCA
AACTACGCTCTGGCTGACTACGGTGTACCCATCTGAACTCCGATCCACCAGTCTAGCCCAATAGT
CTGGCCAAACTCTCAGCCTGGCAAACTCTCAGCCTGGCCAACTCTCAGCCTGGCCAAACTCTCAG
CCAACCCCTGAGCCTGGCCATACCCTGACCCTGGCCATACCCTGACCCAGTCAGCCCAGCTCACC
CACCTCCCCACCCGTGTCGAGCTTCCCGGCCTCCCCTCTGCCCTCGCTCGCCCCACCTCGCCCCG
GCTACGACTGCCCGCCGGTGGTCGCACCCCCTCGTAACCGCTCGC
Found at i:20935 original size:13 final size:13
Alignment explanation
Indices: 20917--20961 Score: 63
Period size: 13 Copynumber: 3.5 Consensus size: 13
20907 CCGTACAAGC
20917 CCCAGCCAAGCGA
1 CCCAGCCAAGCGA
* *
20930 CCCAGCAAAGGGA
1 CCCAGCCAAGCGA
20943 CCCAGCCAAGCGA
1 CCCAGCCAAGCGA
*
20956 ACCAGC
1 CCCAGC
20962 TTCACAAGAG
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
13 27 1.00
ACGTcount: A:0.33, C:0.42, G:0.24, T:0.00
Consensus pattern (13 bp):
CCCAGCCAAGCGA
Left flanking sequence: Indices 20417 -- 20916
ACCGCTCGTGTGACCGTCCCCCTCGTGCCCCCCCCACGTTGGGGCACACGTTGCGCAATGGTCTC
ACAACCACCCCACAAAAGGGTGGACGACGCCGTACAAAAGTAGAAAACCGTGGTAGCAGGGACTT
TCGGCCGTCCTTTCGTCGTTGTGGTTCTTGTTTTTATACGTTCTGGCCTAGTCCGTGGTATTACT
CGTGGGTCTCCTTTGCCGTGCCCCACTAAGCGCCCCCCCAGCGCCCCCCAGCGACCCCCAGCGTC
CACACCCCAAACCCGTTTGCGTAATCTAGCTCGTACCCGTGTTCTCCGCCGTGTCTACGTCGACT
TACCCCTACGACCCGGTGACTACCCCTACGACCCGGAGACTACCCTAGCCCTGAGCCCCGTGCCC
CGAGCCCCAAGCCCCGAGCCTTGAGTCCCGTGCCCCGTGCCCCGTGCCCTTCAGACAGACTTTTC
AGTGCTTGGCGTGGAATTGCTGAGCAAGCCCCCAGCCGTACAAGC
Right flanking sequence: Indices 20962 -- 21461
TTCACAAGAGCCCATTCAACACGTGCCAGACACACGCAGAGTACGCTCGGCCTACGCTCTGGTTC
CAATTTCAGCCTACAATCGTGCCAAACTACGCTCTGGCTGACTACGGTGTACCCATCTGAACTCC
GATCCACCAGTCTAGCCCAATAGTCTGGCCAAACTCTCAGCCTGGCAAACTCTCAGCCTGGCCAA
CTCTCAGCCTGGCCAAACTCTCAGCCAACCCCTGAGCCTGGCCATACCCTGACCCTGGCCATACC
CTGACCCAGTCAGCCCAGCTCACCCACCTCCCCACCCGTGTCGAGCTTCCCGGCCTCCCCTCTGC
CCTCGCTCGCCCCACCTCGCCCCGGCTACGACTGCCCGCCGGTGGTCGCACCCCCTCGTAACCGC
TCGCGCCGGCCGCACTTTTCGGCCCCCCCAGCGGCGTCGCAGCGCCCCCCGTTCGCCCCCGCGCC
CGGGGCCGCACCAGCCCCGATTCCTATCTCGCCGCTTATCTTTTC
Found at i:21142 original size:16 final size:17
Alignment explanation
Indices: 21116--21182 Score: 120
Period size: 16 Copynumber: 4.1 Consensus size: 17
21106 GCCCAATAGT
21116 CTGGCCAAACTCTCAGC
1 CTGGCCAAACTCTCAGC
21133 CTGG-CAAACTCTCAGC
1 CTGGCCAAACTCTCAGC
21149 CTGGCC-AACTCTCAGC
1 CTGGCCAAACTCTCAGC
21165 CTGGCCAAACTCTCAGC
1 CTGGCCAAACTCTCAGC
21182 C
1 C
21183 AACCCCTGAG
Statistics
Matches: 48, Mismatches: 0, Indels: 4
0.92 0.00 0.08
Matches are distributed among these distances:
16 32 0.67
17 16 0.33
ACGTcount: A:0.22, C:0.42, G:0.18, T:0.18
Consensus pattern (17 bp):
CTGGCCAAACTCTCAGC
Left flanking sequence: Indices 20616 -- 21115
GGTCTCCTTTGCCGTGCCCCACTAAGCGCCCCCCCAGCGCCCCCCAGCGACCCCCAGCGTCCACA
CCCCAAACCCGTTTGCGTAATCTAGCTCGTACCCGTGTTCTCCGCCGTGTCTACGTCGACTTACC
CCTACGACCCGGTGACTACCCCTACGACCCGGAGACTACCCTAGCCCTGAGCCCCGTGCCCCGAG
CCCCAAGCCCCGAGCCTTGAGTCCCGTGCCCCGTGCCCCGTGCCCTTCAGACAGACTTTTCAGTG
CTTGGCGTGGAATTGCTGAGCAAGCCCCCAGCCGTACAAGCCCCAGCCAAGCGACCCAGCAAAGG
GACCCAGCCAAGCGAACCAGCTTCACAAGAGCCCATTCAACACGTGCCAGACACACGCAGAGTAC
GCTCGGCCTACGCTCTGGTTCCAATTTCAGCCTACAATCGTGCCAAACTACGCTCTGGCTGACTA
CGGTGTACCCATCTGAACTCCGATCCACCAGTCTAGCCCAATAGT
Right flanking sequence: Indices 21183 -- 21682
AACCCCTGAGCCTGGCCATACCCTGACCCTGGCCATACCCTGACCCAGTCAGCCCAGCTCACCCA
CCTCCCCACCCGTGTCGAGCTTCCCGGCCTCCCCTCTGCCCTCGCTCGCCCCACCTCGCCCCGGC
TACGACTGCCCGCCGGTGGTCGCACCCCCTCGTAACCGCTCGCGCCGGCCGCACTTTTCGGCCCC
CCCAGCGGCGTCGCAGCGCCCCCCGTTCGCCCCCGCGCCCGGGGCCGCACCAGCCCCGATTCCTA
TCTCGCCGCTTATCTTTTCGGGCCCCGAAGTGCAACACCACCGCGAAAAAAAAACTCTTGACCAC
ACCGCACACCCCCCTAATGACACCATGGAGTACCGCCCACGCAAGAAAGCAGACTCGGTCCTGGC
ACTAGAGCGGGACGCCCCCAACTTGCACGGGCGCAAGGCGGCGCGGCTGCTCCGGATCTTCCGCG
CCCCCACCACCACCGACACCGAGGACGACGACGAGTTGCGGGCGC
Found at i:21153 original size:33 final size:33
Alignment explanation
Indices: 21116--21182 Score: 118
Period size: 33 Copynumber: 2.0 Consensus size: 33
21106 GCCCAATAGT
21116 CTGGCCAAACTCTCAGCCTGG-CAAACTCTCAGC
1 CTGGCC-AACTCTCAGCCTGGCCAAACTCTCAGC
21149 CTGGCCAACTCTCAGCCTGGCCAAACTCTCAGC
1 CTGGCCAACTCTCAGCCTGGCCAAACTCTCAGC
21182 C
1 C
21183 AACCCCTGAG
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
32 14 0.42
33 19 0.58
ACGTcount: A:0.22, C:0.42, G:0.18, T:0.18
Consensus pattern (33 bp):
CTGGCCAACTCTCAGCCTGGCCAAACTCTCAGC
Left flanking sequence: Indices 20616 -- 21115
GGTCTCCTTTGCCGTGCCCCACTAAGCGCCCCCCCAGCGCCCCCCAGCGACCCCCAGCGTCCACA
CCCCAAACCCGTTTGCGTAATCTAGCTCGTACCCGTGTTCTCCGCCGTGTCTACGTCGACTTACC
CCTACGACCCGGTGACTACCCCTACGACCCGGAGACTACCCTAGCCCTGAGCCCCGTGCCCCGAG
CCCCAAGCCCCGAGCCTTGAGTCCCGTGCCCCGTGCCCCGTGCCCTTCAGACAGACTTTTCAGTG
CTTGGCGTGGAATTGCTGAGCAAGCCCCCAGCCGTACAAGCCCCAGCCAAGCGACCCAGCAAAGG
GACCCAGCCAAGCGAACCAGCTTCACAAGAGCCCATTCAACACGTGCCAGACACACGCAGAGTAC
GCTCGGCCTACGCTCTGGTTCCAATTTCAGCCTACAATCGTGCCAAACTACGCTCTGGCTGACTA
CGGTGTACCCATCTGAACTCCGATCCACCAGTCTAGCCCAATAGT
Right flanking sequence: Indices 21183 -- 21682
AACCCCTGAGCCTGGCCATACCCTGACCCTGGCCATACCCTGACCCAGTCAGCCCAGCTCACCCA
CCTCCCCACCCGTGTCGAGCTTCCCGGCCTCCCCTCTGCCCTCGCTCGCCCCACCTCGCCCCGGC
TACGACTGCCCGCCGGTGGTCGCACCCCCTCGTAACCGCTCGCGCCGGCCGCACTTTTCGGCCCC
CCCAGCGGCGTCGCAGCGCCCCCCGTTCGCCCCCGCGCCCGGGGCCGCACCAGCCCCGATTCCTA
TCTCGCCGCTTATCTTTTCGGGCCCCGAAGTGCAACACCACCGCGAAAAAAAAACTCTTGACCAC
ACCGCACACCCCCCTAATGACACCATGGAGTACCGCCCACGCAAGAAAGCAGACTCGGTCCTGGC
ACTAGAGCGGGACGCCCCCAACTTGCACGGGCGCAAGGCGGCGCGGCTGCTCCGGATCTTCCGCG
CCCCCACCACCACCGACACCGAGGACGACGACGAGTTGCGGGCGC
Found at i:21200 original size:17 final size:18
Alignment explanation
Indices: 21180--21228 Score: 68
Period size: 17 Copynumber: 2.9 Consensus size: 18
21170 CAAACTCTCA
*
21180 GCCA-ACCCCTGAGCCTG
1 GCCATACCCCTGACCCTG
21197 GCCATA-CCCTGACCCTG
1 GCCATACCCCTGACCCTG
21214 GCCATA-CCCTGACCC
1 GCCATACCCCTGACCC
21229 AGTCAGCCCA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
17 29 0.97
18 1 0.03
ACGTcount: A:0.18, C:0.49, G:0.18, T:0.14
Consensus pattern (18 bp):
GCCATACCCCTGACCCTG
Left flanking sequence: Indices 20680 -- 21179
ACCCCAAACCCGTTTGCGTAATCTAGCTCGTACCCGTGTTCTCCGCCGTGTCTACGTCGACTTAC
CCCTACGACCCGGTGACTACCCCTACGACCCGGAGACTACCCTAGCCCTGAGCCCCGTGCCCCGA
GCCCCAAGCCCCGAGCCTTGAGTCCCGTGCCCCGTGCCCCGTGCCCTTCAGACAGACTTTTCAGT
GCTTGGCGTGGAATTGCTGAGCAAGCCCCCAGCCGTACAAGCCCCAGCCAAGCGACCCAGCAAAG
GGACCCAGCCAAGCGAACCAGCTTCACAAGAGCCCATTCAACACGTGCCAGACACACGCAGAGTA
CGCTCGGCCTACGCTCTGGTTCCAATTTCAGCCTACAATCGTGCCAAACTACGCTCTGGCTGACT
ACGGTGTACCCATCTGAACTCCGATCCACCAGTCTAGCCCAATAGTCTGGCCAAACTCTCAGCCT
GGCAAACTCTCAGCCTGGCCAACTCTCAGCCTGGCCAAACTCTCA
Right flanking sequence: Indices 21229 -- 21728
AGTCAGCCCAGCTCACCCACCTCCCCACCCGTGTCGAGCTTCCCGGCCTCCCCTCTGCCCTCGCT
CGCCCCACCTCGCCCCGGCTACGACTGCCCGCCGGTGGTCGCACCCCCTCGTAACCGCTCGCGCC
GGCCGCACTTTTCGGCCCCCCCAGCGGCGTCGCAGCGCCCCCCGTTCGCCCCCGCGCCCGGGGCC
GCACCAGCCCCGATTCCTATCTCGCCGCTTATCTTTTCGGGCCCCGAAGTGCAACACCACCGCGA
AAAAAAAACTCTTGACCACACCGCACACCCCCCTAATGACACCATGGAGTACCGCCCACGCAAGA
AAGCAGACTCGGTCCTGGCACTAGAGCGGGACGCCCCCAACTTGCACGGGCGCAAGGCGGCGCGG
CTGCTCCGGATCTTCCGCGCCCCCACCACCACCGACACCGAGGACGACGACGAGTTGCGGGCGCT
GCTCGCGAGCACCGTGCTCGACAAGCCCGACGACCCGGTGCTGCT
Found at i:22201 original size:9 final size:9
Alignment explanation
Indices: 22187--22221 Score: 70
Period size: 9 Copynumber: 3.9 Consensus size: 9
22177 CCATCCTATA
22187 GCCAGACCG
1 GCCAGACCG
22196 GCCAGACCG
1 GCCAGACCG
22205 GCCAGACCG
1 GCCAGACCG
22214 GCCAGACC
1 GCCAGACC
22222 CAGGGCCAGG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.23, C:0.46, G:0.31, T:0.00
Consensus pattern (9 bp):
GCCAGACCG
Left flanking sequence: Indices 21687 -- 22186
CGCGAGCACCGTGCTCGACAAGCCCGACGACCCGGTGCTGCTGGCCACCTACTTCCCCCACCTGC
CCCAGCTCGCGGTGCCGGCGACCCAGCACTTGACGGCGAAGCTCGAGTACGACCACTCCGACCTC
GGCACCACCATCACCCACTCCGACCTGGGGCTGCTGGCGGTGTGCGCGGGGCCGATCCCCGAGCT
TGCCCCCTACGGCGGCGCCGACGCCCCCCACGACCCCGCGCGCGCGCCCCTCCCGCACTCGGCGC
CCGCCCTCGACGACACCCCCGGCATTCTTCCCGAAGACAAACCGCGTGCCCACAGCGACAACGAG
CTTCTCCCGGCGCTCCACGACCGCGTGGGGCTCCACCAGCTCCACCAGGACCTTCCCCAGCATCG
GCCCGACGACAACCACCAAGGTGTGGACCCCACCAAACGGGACAGTGAGGCTGGTGGCCACAGAA
CGGGCCATAGAGTGGGTCCCACCAGTTCCAAAGACCCATCCTATA
Right flanking sequence: Indices 22222 -- 22721
CAGGGCCAGGCCCACAAGGGTTCCGGGCCTGGTTCTACTGGTGCTACCGACCCCAGCACTGACTC
ATCTCGCATCTCCCACCCTGGTCGTATCGACCCCAGCACGGGCTCATCCCACCCCAGCACTGACC
CATCCCGCCCCACTGACCCATCCCGCCCCCACGATGCCCCCCCTGCCCCCAGCACCGACCCCACT
CCCCCTGCCCCCAGCACCCCTGCCGCACCGCACTTCACCCCGCCCCAGAAGCCGCACCGCGCGCT
GCCCCAGCTCTACCCCCTCGCGGTGGAACTCCGCCCCTTCAAGAACAAGGTGGGCGGCCACACCG
CCATCTTCTCGTTCAGCAAGCAGGCGGTGTGCAAGGCGCTCGTCAACCGCGAGAACATCTTCTAC
GAGGCGGTCGAGCAGCACCACCGCGACCTCGTGGCGTTCATGCCCAAGTACATCGGCGTGCTCAA
CGTGCGCTACCTGCTGATGGTGGCCGAGCACCCGACGCCGCCGCT
Found at i:22355 original size:21 final size:21
Alignment explanation
Indices: 22316--22380 Score: 64
Period size: 21 Copynumber: 3.2 Consensus size: 21
22306 GGTCGTATCG
* * *
22316 ACCCCAGCACGGGCTCATCCC
1 ACCCCAGCACTGACCCATCCC
22337 ACCCCAGCACTGACCCATCCC
1 ACCCCAGCACTGACCCATCCC
*
22358 -GCCC--CACTGACCCATCCC
1 ACCCCAGCACTGACCCATCCC
*
22376 GCCCC
1 ACCCC
22381 CACGATGCCC
Statistics
Matches: 38, Mismatches: 5, Indels: 4
0.81 0.11 0.09
Matches are distributed among these distances:
18 14 0.37
19 3 0.08
20 3 0.08
21 18 0.47
ACGTcount: A:0.18, C:0.58, G:0.14, T:0.09
Consensus pattern (21 bp):
ACCCCAGCACTGACCCATCCC
Left flanking sequence: Indices 21816 -- 22315
CGGCACCACCATCACCCACTCCGACCTGGGGCTGCTGGCGGTGTGCGCGGGGCCGATCCCCGAGC
TTGCCCCCTACGGCGGCGCCGACGCCCCCCACGACCCCGCGCGCGCGCCCCTCCCGCACTCGGCG
CCCGCCCTCGACGACACCCCCGGCATTCTTCCCGAAGACAAACCGCGTGCCCACAGCGACAACGA
GCTTCTCCCGGCGCTCCACGACCGCGTGGGGCTCCACCAGCTCCACCAGGACCTTCCCCAGCATC
GGCCCGACGACAACCACCAAGGTGTGGACCCCACCAAACGGGACAGTGAGGCTGGTGGCCACAGA
ACGGGCCATAGAGTGGGTCCCACCAGTTCCAAAGACCCATCCTATAGCCAGACCGGCCAGACCGG
CCAGACCGGCCAGACCCAGGGCCAGGCCCACAAGGGTTCCGGGCCTGGTTCTACTGGTGCTACCG
ACCCCAGCACTGACTCATCTCGCATCTCCCACCCTGGTCGTATCG
Right flanking sequence: Indices 22381 -- 22880
CACGATGCCCCCCCTGCCCCCAGCACCGACCCCACTCCCCCTGCCCCCAGCACCCCTGCCGCACC
GCACTTCACCCCGCCCCAGAAGCCGCACCGCGCGCTGCCCCAGCTCTACCCCCTCGCGGTGGAAC
TCCGCCCCTTCAAGAACAAGGTGGGCGGCCACACCGCCATCTTCTCGTTCAGCAAGCAGGCGGTG
TGCAAGGCGCTCGTCAACCGCGAGAACATCTTCTACGAGGCGGTCGAGCAGCACCACCGCGACCT
CGTGGCGTTCATGCCCAAGTACATCGGCGTGCTCAACGTGCGCTACCTGCTGATGGTGGCCGAGC
ACCCGACGCCGCCGCTGGGCACCGCGGGGCTGTTCCTGGACGAGGTGCACCAGGCGATGATGACG
CGGGACGCCGACATTCCCGCGCTCGAGGGGATGTGCGAGGCTGCGCGACGGGCCAGCGAGGCCGG
AGAGGATGGTGGAGCCGTAGGTGTTGCTGGTGGCCCTGGTAGTGG
Found at i:22383 original size:19 final size:18
Alignment explanation
Indices: 22344--22380 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
22334 CCCACCCCAG
22344 CACTGACCCATCCCGCCC
1 CACTGACCCATCCCGCCC
22362 CACTGACCCATCCCGCCC
1 CACTGACCCATCCCGCCC
22380 C
1 C
22381 CACGATGCCC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.16, C:0.62, G:0.11, T:0.11
Consensus pattern (18 bp):
CACTGACCCATCCCGCCC
Left flanking sequence: Indices 21844 -- 22343
GGGCTGCTGGCGGTGTGCGCGGGGCCGATCCCCGAGCTTGCCCCCTACGGCGGCGCCGACGCCCC
CCACGACCCCGCGCGCGCGCCCCTCCCGCACTCGGCGCCCGCCCTCGACGACACCCCCGGCATTC
TTCCCGAAGACAAACCGCGTGCCCACAGCGACAACGAGCTTCTCCCGGCGCTCCACGACCGCGTG
GGGCTCCACCAGCTCCACCAGGACCTTCCCCAGCATCGGCCCGACGACAACCACCAAGGTGTGGA
CCCCACCAAACGGGACAGTGAGGCTGGTGGCCACAGAACGGGCCATAGAGTGGGTCCCACCAGTT
CCAAAGACCCATCCTATAGCCAGACCGGCCAGACCGGCCAGACCGGCCAGACCCAGGGCCAGGCC
CACAAGGGTTCCGGGCCTGGTTCTACTGGTGCTACCGACCCCAGCACTGACTCATCTCGCATCTC
CCACCCTGGTCGTATCGACCCCAGCACGGGCTCATCCCACCCCAG
Right flanking sequence: Indices 22381 -- 22880
CACGATGCCCCCCCTGCCCCCAGCACCGACCCCACTCCCCCTGCCCCCAGCACCCCTGCCGCACC
GCACTTCACCCCGCCCCAGAAGCCGCACCGCGCGCTGCCCCAGCTCTACCCCCTCGCGGTGGAAC
TCCGCCCCTTCAAGAACAAGGTGGGCGGCCACACCGCCATCTTCTCGTTCAGCAAGCAGGCGGTG
TGCAAGGCGCTCGTCAACCGCGAGAACATCTTCTACGAGGCGGTCGAGCAGCACCACCGCGACCT
CGTGGCGTTCATGCCCAAGTACATCGGCGTGCTCAACGTGCGCTACCTGCTGATGGTGGCCGAGC
ACCCGACGCCGCCGCTGGGCACCGCGGGGCTGTTCCTGGACGAGGTGCACCAGGCGATGATGACG
CGGGACGCCGACATTCCCGCGCTCGAGGGGATGTGCGAGGCTGCGCGACGGGCCAGCGAGGCCGG
AGAGGATGGTGGAGCCGTAGGTGTTGCTGGTGGCCCTGGTAGTGG
Found at i:22882 original size:12 final size:12
Alignment explanation
Indices: 22865--22910 Score: 74
Period size: 12 Copynumber: 3.8 Consensus size: 12
22855 GGTGTTGCTG
*
22865 GTGGCCCTGGTA
1 GTGGCCCTGGCA
*
22877 GTGGCCATGGCA
1 GTGGCCCTGGCA
22889 GTGGCCCTGGCA
1 GTGGCCCTGGCA
22901 GTGGCCCTGG
1 GTGGCCCTGG
22911 TGGTCTGGTT
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 31 1.00
ACGTcount: A:0.09, C:0.28, G:0.43, T:0.20
Consensus pattern (12 bp):
GTGGCCCTGGCA
Left flanking sequence: Indices 22365 -- 22864
TGACCCATCCCGCCCCCACGATGCCCCCCCTGCCCCCAGCACCGACCCCACTCCCCCTGCCCCCA
GCACCCCTGCCGCACCGCACTTCACCCCGCCCCAGAAGCCGCACCGCGCGCTGCCCCAGCTCTAC
CCCCTCGCGGTGGAACTCCGCCCCTTCAAGAACAAGGTGGGCGGCCACACCGCCATCTTCTCGTT
CAGCAAGCAGGCGGTGTGCAAGGCGCTCGTCAACCGCGAGAACATCTTCTACGAGGCGGTCGAGC
AGCACCACCGCGACCTCGTGGCGTTCATGCCCAAGTACATCGGCGTGCTCAACGTGCGCTACCTG
CTGATGGTGGCCGAGCACCCGACGCCGCCGCTGGGCACCGCGGGGCTGTTCCTGGACGAGGTGCA
CCAGGCGATGATGACGCGGGACGCCGACATTCCCGCGCTCGAGGGGATGTGCGAGGCTGCGCGAC
GGGCCAGCGAGGCCGGAGAGGATGGTGGAGCCGTAGGTGTTGCTG
Right flanking sequence: Indices 22911 -- 23410
TGGTCTGGTTGGAGCACACAGTCACTTTTCTGGTGACACCACGAAGATTGGTGGTGGCAACGCTA
AGATTGATGGTTGTGACCATGAGATTTCTGGTAACCACCCTACTGTTGCTGGTGGAAACGTCCCT
AGCCTTTCTAGTGCCGAGATAGATGGCACCACCACTGACACCACTGACAATGCTCACACTAGCAA
TGCACACACTGGCAATGCTCGCACCACTGATAACGTCACTGGTGTGGACTCCTCCAACCCCACTG
CCTTGGACTCTAATGGCCACGCCTCCACGCCCACCTCCCACCCCACGGTGCACTTCCACCCGTCG
CACCCACACCCCGCACACTCCCACCCGCACCCGCACCCGGCACACGCCCCGGCAGCACACGCACA
CTCGTCGCACGTGCACACGTCGCACCCCTACGCGTCGCCGTCAACGTCGCTCCCGCTGCCCCTGA
ACCCCGCAGTGGTGCTCGACGACAACAAGCACATCATCCCCGACA
Found at i:23106 original size:15 final size:15
Alignment explanation
Indices: 23088--23125 Score: 58
Period size: 15 Copynumber: 2.5 Consensus size: 15
23078 ACACCACTGA
23088 CAATGCTCACACTAG
1 CAATGCTCACACTAG
* *
23103 CAATGCACACACTGG
1 CAATGCTCACACTAG
23118 CAATGCTC
1 CAATGCTC
23126 GCACCACTGA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.32, C:0.34, G:0.16, T:0.18
Consensus pattern (15 bp):
CAATGCTCACACTAG
Left flanking sequence: Indices 22588 -- 23087
GTCAACCGCGAGAACATCTTCTACGAGGCGGTCGAGCAGCACCACCGCGACCTCGTGGCGTTCAT
GCCCAAGTACATCGGCGTGCTCAACGTGCGCTACCTGCTGATGGTGGCCGAGCACCCGACGCCGC
CGCTGGGCACCGCGGGGCTGTTCCTGGACGAGGTGCACCAGGCGATGATGACGCGGGACGCCGAC
ATTCCCGCGCTCGAGGGGATGTGCGAGGCTGCGCGACGGGCCAGCGAGGCCGGAGAGGATGGTGG
AGCCGTAGGTGTTGCTGGTGGCCCTGGTAGTGGCCATGGCAGTGGCCCTGGCAGTGGCCCTGGTG
GTCTGGTTGGAGCACACAGTCACTTTTCTGGTGACACCACGAAGATTGGTGGTGGCAACGCTAAG
ATTGATGGTTGTGACCATGAGATTTCTGGTAACCACCCTACTGTTGCTGGTGGAAACGTCCCTAG
CCTTTCTAGTGCCGAGATAGATGGCACCACCACTGACACCACTGA
Right flanking sequence: Indices 23126 -- 23625
GCACCACTGATAACGTCACTGGTGTGGACTCCTCCAACCCCACTGCCTTGGACTCTAATGGCCAC
GCCTCCACGCCCACCTCCCACCCCACGGTGCACTTCCACCCGTCGCACCCACACCCCGCACACTC
CCACCCGCACCCGCACCCGGCACACGCCCCGGCAGCACACGCACACTCGTCGCACGTGCACACGT
CGCACCCCTACGCGTCGCCGTCAACGTCGCTCCCGCTGCCCCTGAACCCCGCAGTGGTGCTCGAC
GACAACAAGCACATCATCCCCGACAAGTTGTGGCGCCAGTACCTGCTGCTGCACCCGCTGCCCCA
GTACCTCCCGCGCGACTCCGACGACGACACCCTGTCCACGGGCACCACCACCGGCGACGGGCTGA
CGGTGGTCAACACCGACCTCCAGGCCCAGGTGCTCCAGGAGGTGTTCCCTCCTCTGCACCTGGGG
CGCGGCTCCCACGACGACCTCTTTGCCATGGAGGTCGAGGGCGCT
Found at i:24748 original size:10 final size:10
Alignment explanation
Indices: 24735--24765 Score: 53
Period size: 10 Copynumber: 3.0 Consensus size: 10
24725 GGAAGAAGAA
24735 AGAGGTGTGG
1 AGAGGTGTGG
24745 AGAGGTGTGG
1 AGAGGTGTGG
24755 AGAGGGTGTGG
1 AGA-GGTGTGG
24766 TTGTGGTGGA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 13 0.65
11 7 0.35
ACGTcount: A:0.19, C:0.00, G:0.61, T:0.19
Consensus pattern (10 bp):
AGAGGTGTGG
Left flanking sequence: Indices 24235 -- 24734
TCGCGCCTCAACGGCTACCGCATGTACGGGCTGCTGGTGCTCGTGATGTACGACGCCGCGTGCCC
TCTGGTGATCAAGCTCAAGATCATCGACTTTGCCCAGCTGGTGATTGCCGAGCCGTCGCCCATGA
TGAACCGTCACGTGACCATCCCCCCGGCGCACCCGGGGCTGCCCGACAAGGGGTATCTCCGGGGG
TTGACGCTGATCATCGCGTACTTGGCGGTGATCTGGCGGGTGGTGGCGCGCGAGCCGCTTCCCGC
GGACATGGACGACGCCATGCTTTTTGTCCAGGCCAACAAACTGCGGTTTCTGGGCCCGATCCGGG
CGCTTGACGGGTACGCCGAGCGCCGTGACGACTGTATAGACCCCAGGGACGACGCTGACCCGGAC
GACCCGTTTAATGTGGATTACGATGTGGGCGTGGAGGACGCAGATGTGTCGGAATAGAGGATAGA
TGTATATACGCTGTAATATAGTGAAGAAGGAAGAAGGAAGAAGAA
Right flanking sequence: Indices 24766 -- 25265
TTGTGGTGGAATGGAGTGTGGTGGTGAGGTTCGTTGTTTGTAGTGTGCTAGTCTGGTTTGTTTTC
TCAGCGTGGTGGGTTATGTAAAACGGTGGTTGTAGGGCCATTTTTTTATGGTGAACGTCAGTAGA
CTGCGCAGATCGAGATGCCAATAGTGTAGTATGACTACCACCGACCTGGTGCTATACCCTTTCGC
CTCCAAATCGCCTTCTCGCAATTGCTGCTTTTTGCCGTTTTGGGCCATTTGCAACCGTGCGCGCA
GTATTTCCGCCAGAAACGGACCACTCCAGACGACCACCACGAGTCGAAAACGAGGAAACCACGCT
GGAGAGAAGCAAAAGGGGGCTGTTATGGGTCATTGTGACTTTCAACTACCCGCCTACCTGCGCTT
CCAGTTAGTTTGGGCGACTCGTTGTCTATTCTTCGCTCGCCTTTGTTTTAGGCCAGTTTGAGCCT
TGTTCGAGCTGAAAATGGCCCAACGGTCTAGGCGCTGCGCTGAAA
Found at i:32073 original size:14 final size:14
Alignment explanation
Indices: 32028--32167 Score: 171
Period size: 14 Copynumber: 10.1 Consensus size: 14
32018 CAACCTCCAG
* *
32028 CAACAACAACAACAA
1 CAACACCAAC-ACAC
*
32043 CAACAACAACAACAC
1 CAACACCAAC-ACAC
*
32058 CAATACCAACACAC
1 CAACACCAACACAC
32072 CAACACCAACACAC
1 CAACACCAACACAC
* *
32086 CGACAAC-A-ACAC
1 CAACACCAACACAC
32098 CAACACCAACACAC
1 CAACACCAACACAC
32112 CAACACCAACACAC
1 CAACACCAACACAC
*
32126 CGACACC-A-ACAC
1 CAACACCAACACAC
32138 CAACACCAACACAC
1 CAACACCAACACAC
32152 CAACACCAACACAC
1 CAACACCAACACAC
32166 CA
1 CA
32168 GAATGAAAGG
Statistics
Matches: 111, Mismatches: 10, Indels: 9
0.85 0.08 0.07
Matches are distributed among these distances:
12 19 0.17
13 4 0.04
14 66 0.59
15 22 0.20
ACGTcount: A:0.52, C:0.46, G:0.01, T:0.01
Consensus pattern (14 bp):
CAACACCAACACAC
Left flanking sequence: Indices 31528 -- 32027
ATAACCGGCCCCCTCTAACAAATCCCAAAGGTCTGCATGTAAAAACGGCCCCCTCTAACAAACGA
CCACCCCACTATACGACGAGCTATACGACGACCATTCATTTCCTAAAGACTTTACGAGCATTACA
TAACTCCTTATGTTCGTCGCTTTACGAACTATATAGCCTAATCCGGCTTACACGTCGTGTGATTC
AGATCACGTGACTTTACTGTTGGTACCGTAGTAAGCGTTGATTATAGCGAGCCTGTACATATCCT
ATATACTACAAAAGCCCCCAGTACGGCTTCAGGGTAGCCCGCTCATGCAGGCTACCCCGAAGGCG
CACCCAGTGCTTAACTATACAATTATAGAAACCCGGATTGGATACCAATGGCACCACCAACAGGG
GAAAAAACGGTGCCAATACCACCCGATCCAACGAATTGAATCGGATACCATTGGCACCACCAACA
GGGGGAAAAGGAGCCATTGGCATCCAACCCTTAAACAACCTCCAG
Right flanking sequence: Indices 32168 -- 32667
GAATGAAAGGGGGTGACACCACTAGTACTTCTAATCTCGTCTCCCATATGGCAAAGGAAGCGAAG
CCCAGAGGCTTGCAACTCCCCGCGCCGACCACGGGATGGTTCTGTGGCGATACCGCCCATCCTGA
CGCTAGATTGCACCTCCCACCTCCCGGCCCGTCGGCCATCGAGTAGAAGCGTGCAACTGCACATG
TCAGGACTGTTCGAGGACCCGTAGCTGGTAGGTGGCCAACCTACCAGTAACAAGCCCTGTCACCA
GACCAACAGACGCTGAGCCACCACCATGGCGCGAAGCGCCAACGGATAATGACCCAGCCGGGAGA
CTCCATCAGAAGTACCAGCAGCACCGAGGCTGTGGTGAGCAAGTATCACCACGCTAACGACAAGC
TTTGATTTGTAGCCTCCTTGGGGGGATTTTTTTCCCCCATCTTCTTTGATTTTCTCTTTGCTTGT
CGCTGCCTTCCGTAGTAACGGGAAAGGAGCCGCGCTTGCAGGGTG
Found at i:32077 original size:20 final size:20
Alignment explanation
Indices: 32031--32163 Score: 162
Period size: 20 Copynumber: 6.6 Consensus size: 20
32021 CCTCCAGCAA
* * *
32031 CAACAACAACAACAACAACAA
1 CAACACCAACACCAAC-ACAC
*
32052 CAACACCAATACCAACACAC
1 CAACACCAACACCAACACAC
* *
32072 CAACACCAACA-CACCGACAA
1 CAACACCAACACCAAC-ACAC
32092 CAACACCAACACCAACACAC
1 CAACACCAACACCAACACAC
*
32112 CAACACCAACA-CACCGACAC
1 CAACACCAACACCAAC-ACAC
32132 CAACACCAACACCAACACAC
1 CAACACCAACACCAACACAC
32152 CAACACCAACAC
1 CAACACCAACAC
32164 ACCAGAATGA
Statistics
Matches: 97, Mismatches: 11, Indels: 9
0.83 0.09 0.08
Matches are distributed among these distances:
19 6 0.06
20 72 0.74
21 19 0.20
ACGTcount: A:0.52, C:0.46, G:0.02, T:0.01
Consensus pattern (20 bp):
CAACACCAACACCAACACAC
Left flanking sequence: Indices 31531 -- 32030
ACCGGCCCCCTCTAACAAATCCCAAAGGTCTGCATGTAAAAACGGCCCCCTCTAACAAACGACCA
CCCCACTATACGACGAGCTATACGACGACCATTCATTTCCTAAAGACTTTACGAGCATTACATAA
CTCCTTATGTTCGTCGCTTTACGAACTATATAGCCTAATCCGGCTTACACGTCGTGTGATTCAGA
TCACGTGACTTTACTGTTGGTACCGTAGTAAGCGTTGATTATAGCGAGCCTGTACATATCCTATA
TACTACAAAAGCCCCCAGTACGGCTTCAGGGTAGCCCGCTCATGCAGGCTACCCCGAAGGCGCAC
CCAGTGCTTAACTATACAATTATAGAAACCCGGATTGGATACCAATGGCACCACCAACAGGGGAA
AAAACGGTGCCAATACCACCCGATCCAACGAATTGAATCGGATACCATTGGCACCACCAACAGGG
GGAAAAGGAGCCATTGGCATCCAACCCTTAAACAACCTCCAGCAA
Right flanking sequence: Indices 32164 -- 32663
ACCAGAATGAAAGGGGGTGACACCACTAGTACTTCTAATCTCGTCTCCCATATGGCAAAGGAAGC
GAAGCCCAGAGGCTTGCAACTCCCCGCGCCGACCACGGGATGGTTCTGTGGCGATACCGCCCATC
CTGACGCTAGATTGCACCTCCCACCTCCCGGCCCGTCGGCCATCGAGTAGAAGCGTGCAACTGCA
CATGTCAGGACTGTTCGAGGACCCGTAGCTGGTAGGTGGCCAACCTACCAGTAACAAGCCCTGTC
ACCAGACCAACAGACGCTGAGCCACCACCATGGCGCGAAGCGCCAACGGATAATGACCCAGCCGG
GAGACTCCATCAGAAGTACCAGCAGCACCGAGGCTGTGGTGAGCAAGTATCACCACGCTAACGAC
AAGCTTTGATTTGTAGCCTCCTTGGGGGGATTTTTTTCCCCCATCTTCTTTGATTTTCTCTTTGC
TTGTCGCTGCCTTCCGTAGTAACGGGAAAGGAGCCGCGCTTGCAG
Found at i:32097 original size:40 final size:40
Alignment explanation
Indices: 32048--32166 Score: 220
Period size: 40 Copynumber: 3.0 Consensus size: 40
32038 AACAACAACA
*
32048 ACAACAACACCAATACCAACACACCAACACCAACACACCG
1 ACAACAACACCAACACCAACACACCAACACCAACACACCG
32088 ACAACAACACCAACACCAACACACCAACACCAACACACCG
1 ACAACAACACCAACACCAACACACCAACACCAACACACCG
*
32128 ACACCAACACCAACACCAACACACCAACACCAACACACC
1 ACAACAACACCAACACCAACACACCAACACCAACACACC
32167 AGAATGAAAG
Statistics
Matches: 77, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 77 1.00
ACGTcount: A:0.50, C:0.48, G:0.02, T:0.01
Consensus pattern (40 bp):
ACAACAACACCAACACCAACACACCAACACCAACACACCG
Left flanking sequence: Indices 31548 -- 32047
AATCCCAAAGGTCTGCATGTAAAAACGGCCCCCTCTAACAAACGACCACCCCACTATACGACGAG
CTATACGACGACCATTCATTTCCTAAAGACTTTACGAGCATTACATAACTCCTTATGTTCGTCGC
TTTACGAACTATATAGCCTAATCCGGCTTACACGTCGTGTGATTCAGATCACGTGACTTTACTGT
TGGTACCGTAGTAAGCGTTGATTATAGCGAGCCTGTACATATCCTATATACTACAAAAGCCCCCA
GTACGGCTTCAGGGTAGCCCGCTCATGCAGGCTACCCCGAAGGCGCACCCAGTGCTTAACTATAC
AATTATAGAAACCCGGATTGGATACCAATGGCACCACCAACAGGGGAAAAAACGGTGCCAATACC
ACCCGATCCAACGAATTGAATCGGATACCATTGGCACCACCAACAGGGGGAAAAGGAGCCATTGG
CATCCAACCCTTAAACAACCTCCAGCAACAACAACAACAACAACA
Right flanking sequence: Indices 32167 -- 32666
AGAATGAAAGGGGGTGACACCACTAGTACTTCTAATCTCGTCTCCCATATGGCAAAGGAAGCGAA
GCCCAGAGGCTTGCAACTCCCCGCGCCGACCACGGGATGGTTCTGTGGCGATACCGCCCATCCTG
ACGCTAGATTGCACCTCCCACCTCCCGGCCCGTCGGCCATCGAGTAGAAGCGTGCAACTGCACAT
GTCAGGACTGTTCGAGGACCCGTAGCTGGTAGGTGGCCAACCTACCAGTAACAAGCCCTGTCACC
AGACCAACAGACGCTGAGCCACCACCATGGCGCGAAGCGCCAACGGATAATGACCCAGCCGGGAG
ACTCCATCAGAAGTACCAGCAGCACCGAGGCTGTGGTGAGCAAGTATCACCACGCTAACGACAAG
CTTTGATTTGTAGCCTCCTTGGGGGGATTTTTTTCCCCCATCTTCTTTGATTTTCTCTTTGCTTG
TCGCTGCCTTCCGTAGTAACGGGAAAGGAGCCGCGCTTGCAGGGT
Found at i:32163 original size:6 final size:6
Alignment explanation
Indices: 32028--32163 Score: 110
Period size: 6 Copynumber: 21.0 Consensus size: 6
32018 CAACCTCCAG
* * * * *
32028 CAACAA CAACAA CAACAA CAACAA CAACAC CAATAC CAACACAC CAACAC
1 CAACAC CAACAC CAACAC CAACAC CAACAC CAACAC C-A-ACAC CAACAC
* *
32078 CAACACAC CGACAA CAACAC CAACAC CAACACAC CAACAC CAACACAC
1 C-A-ACAC CAACAC CAACAC CAACAC C-A-ACAC CAACAC C-A-ACAC
*
32126 CGACAC CAACAC CAACAC CAACACAC CAACAC CAACAC
1 CAACAC CAACAC CAACAC C-A-ACAC CAACAC CAACAC
32164 ACCAGAATGA
Statistics
Matches: 111, Mismatches: 9, Indels: 20
0.79 0.06 0.14
Matches are distributed among these distances:
6 79 0.71
7 8 0.07
8 24 0.22
ACGTcount: A:0.52, C:0.46, G:0.01, T:0.01
Consensus pattern (6 bp):
CAACAC
Left flanking sequence: Indices 31528 -- 32027
ATAACCGGCCCCCTCTAACAAATCCCAAAGGTCTGCATGTAAAAACGGCCCCCTCTAACAAACGA
CCACCCCACTATACGACGAGCTATACGACGACCATTCATTTCCTAAAGACTTTACGAGCATTACA
TAACTCCTTATGTTCGTCGCTTTACGAACTATATAGCCTAATCCGGCTTACACGTCGTGTGATTC
AGATCACGTGACTTTACTGTTGGTACCGTAGTAAGCGTTGATTATAGCGAGCCTGTACATATCCT
ATATACTACAAAAGCCCCCAGTACGGCTTCAGGGTAGCCCGCTCATGCAGGCTACCCCGAAGGCG
CACCCAGTGCTTAACTATACAATTATAGAAACCCGGATTGGATACCAATGGCACCACCAACAGGG
GAAAAAACGGTGCCAATACCACCCGATCCAACGAATTGAATCGGATACCATTGGCACCACCAACA
GGGGGAAAAGGAGCCATTGGCATCCAACCCTTAAACAACCTCCAG
Right flanking sequence: Indices 32164 -- 32663
ACCAGAATGAAAGGGGGTGACACCACTAGTACTTCTAATCTCGTCTCCCATATGGCAAAGGAAGC
GAAGCCCAGAGGCTTGCAACTCCCCGCGCCGACCACGGGATGGTTCTGTGGCGATACCGCCCATC
CTGACGCTAGATTGCACCTCCCACCTCCCGGCCCGTCGGCCATCGAGTAGAAGCGTGCAACTGCA
CATGTCAGGACTGTTCGAGGACCCGTAGCTGGTAGGTGGCCAACCTACCAGTAACAAGCCCTGTC
ACCAGACCAACAGACGCTGAGCCACCACCATGGCGCGAAGCGCCAACGGATAATGACCCAGCCGG
GAGACTCCATCAGAAGTACCAGCAGCACCGAGGCTGTGGTGAGCAAGTATCACCACGCTAACGAC
AAGCTTTGATTTGTAGCCTCCTTGGGGGGATTTTTTTCCCCCATCTTCTTTGATTTTCTCTTTGC
TTGTCGCTGCCTTCCGTAGTAACGGGAAAGGAGCCGCGCTTGCAG
Found at i:32998 original size:16 final size:16
Alignment explanation
Indices: 32974--33016 Score: 61
Period size: 16 Copynumber: 2.7 Consensus size: 16
32964 TAGCAGAGTC
*
32974 TTTGCGGTTGG-GGAAG
1 TTTGTGGTTGGCGG-AG
32990 TTTGTGGTTGGCGGAG
1 TTTGTGGTTGGCGGAG
33006 TTTGTGGTTGG
1 TTTGTGGTTGG
33017 AGGGAGGGAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
16 23 0.92
17 2 0.08
ACGTcount: A:0.07, C:0.05, G:0.49, T:0.40
Consensus pattern (16 bp):
TTTGTGGTTGGCGGAG
Left flanking sequence: Indices 32474 -- 32973
TAATGACCCAGCCGGGAGACTCCATCAGAAGTACCAGCAGCACCGAGGCTGTGGTGAGCAAGTAT
CACCACGCTAACGACAAGCTTTGATTTGTAGCCTCCTTGGGGGGATTTTTTTCCCCCATCTTCTT
TGATTTTCTCTTTGCTTGTCGCTGCCTTCCGTAGTAACGGGAAAGGAGCCGCGCTTGCAGGGTGC
AAGCGAGACTCCGAAGCCAACGAGTACCTGGGGGCCGTAGCCCGAGCAGTCCCCCTAGCGAAGTG
CTAGCGGCCCTGCCCACCTCCCAGGCTCGGTGGCTGGCCTCTATCCAATCACGCAGTGTCCACTT
CCAGCGTGGACACCAGATCCGGGTTATCTGAGGTGCATTGGTGGCACCCGCGCTTGCTACCAGGG
ACGGCTCGACCTGGTTCGGATTGGATGAGGTATACAGAAGAAAAAACTGGTGGGAGGGGGGACCA
GCGTATTTATGGTAAGTGGGAATTGTTGTGCAGGCTAGCAGAGTC
Right flanking sequence: Indices 33017 -- 33516
AGGGAGGGAAGGAAGAGAAGGCACATGGTGGGGAGTGTGTGGTGGTATTGTGGTGGAAGTGTGGT
GGGAAGTATTTCTATGGGGTGGGCGTTGGTGCTTGTAGCTTGGGCCTCGTAAAGTTTGGTGGATG
GTACGTCTTAAGGGTACCCAAAGTACCCAAAGGGATCGTGCGCCGGTAAACACATGGTGGGGCAT
TGTAGTACCCTATGGCCTTCTCGACAGTGATTTACGCACCTGTCTCCTTCCAAAGCCTAGGTTGC
AACCACCACTTCCCAAAGTGGAAATATGCAACACTTTAGCCTCAAGCAATCTACTCAAAGTCTAC
ACTTGTCTATGCAACAATTTAGCCTCAGCAATCTTCTCAAATTCTAAACTTGTCTATGGAACACT
TTAGCCTCAACCGATCTACCCAATTCTACACTGTCTAGTTATATTCCTCTTATTCATACATTACC
GGCGCTCCTCCCTAGAGTACGGGTGGTACCCGCGTCTCTGGTACC
Found at i:33432 original size:47 final size:48
Alignment explanation
Indices: 33301--33443 Score: 193
Period size: 47 Copynumber: 3.0 Consensus size: 48
33291 AAAGTGGAAA
*
33301 TATGCAACACTTTAGCCTCAAGCAATCTACTCAAAGTCTACACTTGTC
1 TATGCAACACTTTAGCCTCAAGCAATCTACTCAAATTCTACACTTGTC
* * *
33349 TATGCAACAATTTAGCCTC-AGCAATCTTCTCAAATTCTAAACTTGTC
1 TATGCAACACTTTAGCCTCAAGCAATCTACTCAAATTCTACACTTGTC
* * * *
33396 TATGGAACACTTTAGCCTCAACCGATCTAC-CCAATTCTACAC-TGTC
1 TATGCAACACTTTAGCCTCAAGCAATCTACTCAAATTCTACACTTGTC
33442 TA
1 TA
33444 GTTATATTCC
Statistics
Matches: 83, Mismatches: 11, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
46 6 0.07
47 52 0.63
48 25 0.30
ACGTcount: A:0.31, C:0.29, G:0.10, T:0.31
Consensus pattern (48 bp):
TATGCAACACTTTAGCCTCAAGCAATCTACTCAAATTCTACACTTGTC
Left flanking sequence: Indices 32801 -- 33300
AGCGTGGACACCAGATCCGGGTTATCTGAGGTGCATTGGTGGCACCCGCGCTTGCTACCAGGGAC
GGCTCGACCTGGTTCGGATTGGATGAGGTATACAGAAGAAAAAACTGGTGGGAGGGGGGACCAGC
GTATTTATGGTAAGTGGGAATTGTTGTGCAGGCTAGCAGAGTCTTTGCGGTTGGGGAAGTTTGTG
GTTGGCGGAGTTTGTGGTTGGAGGGAGGGAAGGAAGAGAAGGCACATGGTGGGGAGTGTGTGGTG
GTATTGTGGTGGAAGTGTGGTGGGAAGTATTTCTATGGGGTGGGCGTTGGTGCTTGTAGCTTGGG
CCTCGTAAAGTTTGGTGGATGGTACGTCTTAAGGGTACCCAAAGTACCCAAAGGGATCGTGCGCC
GGTAAACACATGGTGGGGCATTGTAGTACCCTATGGCCTTCTCGACAGTGATTTACGCACCTGTC
TCCTTCCAAAGCCTAGGTTGCAACCACCACTTCCCAAAGTGGAAA
Right flanking sequence: Indices 33444 -- 33943
GTTATATTCCTCTTATTCATACATTACCGGCGCTCCTCCCTAGAGTACGGGTGGTACCCGCGTCT
CTGGTACCCCCCACGGCCACGGCCACGGTTGCGGCCACTGCGGCCACCAGACGGGCCCAGAGGCG
GGGCTCTGCGGGGCCCACGAGGCACCCCGTTCCCGCTCCCGCTACGGCGCGAGTCGGAGTACCCG
TCGCTGCGACGCTCGTAGTCGCGCGAGTTGTTCTCGTAGTCCCGAGACCGCTCGCGGTCGTACTC
GCGACGCTGATCCCAGTTCTGGTTCTGGCCCTGGTTGCCCTGGTTGCCCTGGTTCTGGCCCTGGG
GCTGACCCTGCGGCTGGCCCTGGCCGCCAGCAGGCGGTGGAGGAACCTCCCCTTGCTGTTGCGGG
TTCAACGGCTGCTGGGGCTGCTCGCCCTCCTGGCCGCCGGCCTGCTGGGCCGCAGCCTGCTGATA
CATGTACCACTGCTGCATCCGCTGCCAGTACTCCTGCATCATTTC
Found at i:33745 original size:9 final size:9
Alignment explanation
Indices: 33731--33757 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
33721 TCTGGTTCTG
33731 GCCCTGGTT
1 GCCCTGGTT
33740 GCCCTGGTT
1 GCCCTGGTT
33749 GCCCTGGTT
1 GCCCTGGTT
33758 CTGGCCCTGG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.00, C:0.33, G:0.33, T:0.33
Consensus pattern (9 bp):
GCCCTGGTT
Left flanking sequence: Indices 33231 -- 33730
CTCGACAGTGATTTACGCACCTGTCTCCTTCCAAAGCCTAGGTTGCAACCACCACTTCCCAAAGT
GGAAATATGCAACACTTTAGCCTCAAGCAATCTACTCAAAGTCTACACTTGTCTATGCAACAATT
TAGCCTCAGCAATCTTCTCAAATTCTAAACTTGTCTATGGAACACTTTAGCCTCAACCGATCTAC
CCAATTCTACACTGTCTAGTTATATTCCTCTTATTCATACATTACCGGCGCTCCTCCCTAGAGTA
CGGGTGGTACCCGCGTCTCTGGTACCCCCCACGGCCACGGCCACGGTTGCGGCCACTGCGGCCAC
CAGACGGGCCCAGAGGCGGGGCTCTGCGGGGCCCACGAGGCACCCCGTTCCCGCTCCCGCTACGG
CGCGAGTCGGAGTACCCGTCGCTGCGACGCTCGTAGTCGCGCGAGTTGTTCTCGTAGTCCCGAGA
CCGCTCGCGGTCGTACTCGCGACGCTGATCCCAGTTCTGGTTCTG
Right flanking sequence: Indices 33758 -- 34257
CTGGCCCTGGGGCTGACCCTGCGGCTGGCCCTGGCCGCCAGCAGGCGGTGGAGGAACCTCCCCTT
GCTGTTGCGGGTTCAACGGCTGCTGGGGCTGCTCGCCCTCCTGGCCGCCGGCCTGCTGGGCCGCA
GCCTGCTGATACATGTACCACTGCTGCATCCGCTGCCAGTACTCCTGCATCATTTCGGGACTGAC
CCCGGGGGGCACGCCCATGCCCGGGATTTGCATCCCGTTGTAGCCGTAGCTCTGTTGCTGCTGCT
GTTGCTGCTGCAGGTGGTCGCGGTTGTTGTGGGAGCCCCGCGGTTCTGCCCGCTTCACCTCCATC
GATTTGCCCTTGAGGGTCAAGTACTTATTTACGGTAACTCTATCCACAGCATCGGGGGAGTCGTA
GGTGATGAACCCGAACCCCCGCAGCCGGCCGGTGTCCTTGTCGATCATGAGCTGGGCGTCGATGA
TCAGGCCAAACTGCGAGAAGAACTGGTGGAACTCTTCCTCGTTCA
Found at i:34021 original size:12 final size:12
Alignment explanation
Indices: 34004--34028 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
33994 AGCCGTAGCT
34004 CTGTTGCTGCTG
1 CTGTTGCTGCTG
34016 CTGTTGCTGCTG
1 CTGTTGCTGCTG
34028 C
1 C
34029 AGGTGGTCGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.00, C:0.28, G:0.32, T:0.40
Consensus pattern (12 bp):
CTGTTGCTGCTG
Left flanking sequence: Indices 33504 -- 34003
CGTCTCTGGTACCCCCCACGGCCACGGCCACGGTTGCGGCCACTGCGGCCACCAGACGGGCCCAG
AGGCGGGGCTCTGCGGGGCCCACGAGGCACCCCGTTCCCGCTCCCGCTACGGCGCGAGTCGGAGT
ACCCGTCGCTGCGACGCTCGTAGTCGCGCGAGTTGTTCTCGTAGTCCCGAGACCGCTCGCGGTCG
TACTCGCGACGCTGATCCCAGTTCTGGTTCTGGCCCTGGTTGCCCTGGTTGCCCTGGTTCTGGCC
CTGGGGCTGACCCTGCGGCTGGCCCTGGCCGCCAGCAGGCGGTGGAGGAACCTCCCCTTGCTGTT
GCGGGTTCAACGGCTGCTGGGGCTGCTCGCCCTCCTGGCCGCCGGCCTGCTGGGCCGCAGCCTGC
TGATACATGTACCACTGCTGCATCCGCTGCCAGTACTCCTGCATCATTTCGGGACTGACCCCGGG
GGGCACGCCCATGCCCGGGATTTGCATCCCGTTGTAGCCGTAGCT
Right flanking sequence: Indices 34029 -- 34528
AGGTGGTCGCGGTTGTTGTGGGAGCCCCGCGGTTCTGCCCGCTTCACCTCCATCGATTTGCCCTT
GAGGGTCAAGTACTTATTTACGGTAACTCTATCCACAGCATCGGGGGAGTCGTAGGTGATGAACC
CGAACCCCCGCAGCCGGCCGGTGTCCTTGTCGATCATGAGCTGGGCGTCGATGATCAGGCCAAAC
TGCGAGAAGAACTGGTGGAACTCTTCCTCGTTCACCATGGGGTCGATCCCGCCCACAAAGATCTT
ACCTACCTTGTCCTGCTCCTCGCGAGCAATTGCCCGCTTCGGGTCAATGAGCTTGCCGTCCAAAA
TATGGTCTTGTTTGATTACCTGTTCCACCAGCGCCGGGTCGGCAAACGTGAGGAACCCGAACCCA
CGCGACTTGCCGGTGTTGTTGTCCCGCATGATCGTGTGGTCTAGCACCTCGCCAAACTTGCTAAA
ATACGCTACAAGCCCCTCCTCGGTGGTGTCCCAGTTGAGGCCGCC
Found at i:34716 original size:18 final size:19
Alignment explanation
Indices: 34693--34786 Score: 75
Period size: 18 Copynumber: 4.7 Consensus size: 19
34683 TTCTGCCCAA
34693 ACTGGCCCTGGTTG-CCGT
1 ACTGGCCCTGGTTGCCCGT
34711 ACTGGCCCTGGTTCTGGCCCTGGT
1 ACTGGCCCTGG-T-T-GCCC--GT
* *
34735 TCTGGCCCTGGTTCTGCCCGA
1 ACTGGCCCTGG-T-TGCCCGT
* *
34756 ACTGGCTCTGGTCG-CCGT
1 ACTGGCCCTGGTTGCCCGT
34774 ACTGGCCCTGGTT
1 ACTGGCCCTGGTT
34787 CTGGCCCGGC
Statistics
Matches: 62, Mismatches: 8, Indels: 12
0.76 0.10 0.15
Matches are distributed among these distances:
18 25 0.40
19 2 0.03
20 2 0.03
21 11 0.18
22 2 0.03
23 4 0.06
24 16 0.26
ACGTcount: A:0.05, C:0.34, G:0.32, T:0.29
Consensus pattern (19 bp):
ACTGGCCCTGGTTGCCCGT
Left flanking sequence: Indices 34193 -- 34692
CATGAGCTGGGCGTCGATGATCAGGCCAAACTGCGAGAAGAACTGGTGGAACTCTTCCTCGTTCA
CCATGGGGTCGATCCCGCCCACAAAGATCTTACCTACCTTGTCCTGCTCCTCGCGAGCAATTGCC
CGCTTCGGGTCAATGAGCTTGCCGTCCAAAATATGGTCTTGTTTGATTACCTGTTCCACCAGCGC
CGGGTCGGCAAACGTGAGGAACCCGAACCCACGCGACTTGCCGGTGTTGTTGTCCCGCATGATCG
TGTGGTCTAGCACCTCGCCAAACTTGCTAAAATACGCTACAAGCCCCTCCTCGGTGGTGTCCCAG
TTGAGGCCGCCAATAAACATTTTGCCGGTGTCGCGTCCGATATTCAGCGGCTGGTGGATCACCCC
CTGGGGGGCCGGCGACCCGGTGGAGCCAAACCCCTGGCCGAACTGGCCCGGGGGCCCGGGGGGCT
GGTTGAAGTTCTGGTTCTGGTTGAATTGGCCCGGGTTCTGCCCAA
Right flanking sequence: Indices 34787 -- 35286
CTGGCCCGGCTGGCCTGGCTGGCCCGGCTGGCCTTGGTTCTGGTCGTTGTTGAAGCCTCCCGGGG
GGTACGGCTGCCCGTACTGGCTCGAATTGTCCGCTGCTGGCGGCGGAGGCGGCGGTTGGGCACTG
CCCTCGGGATTGGGTGTTTCCAGCCCCTGGGGGGCCCCGGGAGCCGCGGTGTTGGGCTGGGTGGG
GGTGGACTCGTCTTTTCCATCCTGCACGGGGGTCGCGGACGCCGTCTTTTCGTCGCTCGGCTTGT
CGTCCTTCACGTCGACCTTGGTGTCCTCGTCATCACCACTGGACGGTTAGTATCGAAGATGGTAG
CGGAGGTGGTGGGGTCGACTTACTAGATATCATCGAAGATGGCTTCGTCGTCGGACATTTACTTA
GTCTAAGTTATATGAATGCCTTTATTGGAAATAAACAGATATACCAATCTAACTCCCCTATGTAG
TCCTTGTCGATGTTGCGGCGAAGGCCAACGAAATGGTCGCGCGAG
Found at i:34727 original size:12 final size:12
Alignment explanation
Indices: 34712--34750 Score: 78
Period size: 12 Copynumber: 3.2 Consensus size: 12
34702 GGTTGCCGTA
34712 CTGGCCCTGGTT
1 CTGGCCCTGGTT
34724 CTGGCCCTGGTT
1 CTGGCCCTGGTT
34736 CTGGCCCTGGTT
1 CTGGCCCTGGTT
34748 CTG
1 CTG
34751 CCCGAACTGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 27 1.00
ACGTcount: A:0.00, C:0.33, G:0.33, T:0.33
Consensus pattern (12 bp):
CTGGCCCTGGTT
Left flanking sequence: Indices 34212 -- 34711
ATCAGGCCAAACTGCGAGAAGAACTGGTGGAACTCTTCCTCGTTCACCATGGGGTCGATCCCGCC
CACAAAGATCTTACCTACCTTGTCCTGCTCCTCGCGAGCAATTGCCCGCTTCGGGTCAATGAGCT
TGCCGTCCAAAATATGGTCTTGTTTGATTACCTGTTCCACCAGCGCCGGGTCGGCAAACGTGAGG
AACCCGAACCCACGCGACTTGCCGGTGTTGTTGTCCCGCATGATCGTGTGGTCTAGCACCTCGCC
AAACTTGCTAAAATACGCTACAAGCCCCTCCTCGGTGGTGTCCCAGTTGAGGCCGCCAATAAACA
TTTTGCCGGTGTCGCGTCCGATATTCAGCGGCTGGTGGATCACCCCCTGGGGGGCCGGCGACCCG
GTGGAGCCAAACCCCTGGCCGAACTGGCCCGGGGGCCCGGGGGGCTGGTTGAAGTTCTGGTTCTG
GTTGAATTGGCCCGGGTTCTGCCCAAACTGGCCCTGGTTGCCGTA
Right flanking sequence: Indices 34751 -- 35250
CCCGAACTGGCTCTGGTCGCCGTACTGGCCCTGGTTCTGGCCCGGCTGGCCTGGCTGGCCCGGCT
GGCCTTGGTTCTGGTCGTTGTTGAAGCCTCCCGGGGGGTACGGCTGCCCGTACTGGCTCGAATTG
TCCGCTGCTGGCGGCGGAGGCGGCGGTTGGGCACTGCCCTCGGGATTGGGTGTTTCCAGCCCCTG
GGGGGCCCCGGGAGCCGCGGTGTTGGGCTGGGTGGGGGTGGACTCGTCTTTTCCATCCTGCACGG
GGGTCGCGGACGCCGTCTTTTCGTCGCTCGGCTTGTCGTCCTTCACGTCGACCTTGGTGTCCTCG
TCATCACCACTGGACGGTTAGTATCGAAGATGGTAGCGGAGGTGGTGGGGTCGACTTACTAGATA
TCATCGAAGATGGCTTCGTCGTCGGACATTTACTTAGTCTAAGTTATATGAATGCCTTTATTGGA
AATAAACAGATATACCAATCTAACTCCCCTATGTAGTCCTTGTCG
Found at i:34750 original size:63 final size:63
Alignment explanation
Indices: 34674--34793 Score: 204
Period size: 63 Copynumber: 1.9 Consensus size: 63
34664 CTGGTTGAAT
*
34674 TGGCCCGGGTTCTGCCCAAACTGGCCCTGGTTGCCGTACTGGCCCTGGTTCTGGCCCTGGTTC
1 TGGCCCGGGTTCTGCCCAAACTGGCCCTGGTCGCCGTACTGGCCCTGGTTCTGGCCCTGGTTC
* * *
34737 TGGCCCTGGTTCTGCCCGAACTGGCTCTGGTCGCCGTACTGGCCCTGGTTCTGGCCC
1 TGGCCCGGGTTCTGCCCAAACTGGCCCTGGTCGCCGTACTGGCCCTGGTTCTGGCCC
34794 GGCTGGCCTG
Statistics
Matches: 53, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
63 53 1.00
ACGTcount: A:0.06, C:0.36, G:0.32, T:0.27
Consensus pattern (63 bp):
TGGCCCGGGTTCTGCCCAAACTGGCCCTGGTCGCCGTACTGGCCCTGGTTCTGGCCCTGGTTC
Left flanking sequence: Indices 34174 -- 34673
GGCCGGTGTCCTTGTCGATCATGAGCTGGGCGTCGATGATCAGGCCAAACTGCGAGAAGAACTGG
TGGAACTCTTCCTCGTTCACCATGGGGTCGATCCCGCCCACAAAGATCTTACCTACCTTGTCCTG
CTCCTCGCGAGCAATTGCCCGCTTCGGGTCAATGAGCTTGCCGTCCAAAATATGGTCTTGTTTGA
TTACCTGTTCCACCAGCGCCGGGTCGGCAAACGTGAGGAACCCGAACCCACGCGACTTGCCGGTG
TTGTTGTCCCGCATGATCGTGTGGTCTAGCACCTCGCCAAACTTGCTAAAATACGCTACAAGCCC
CTCCTCGGTGGTGTCCCAGTTGAGGCCGCCAATAAACATTTTGCCGGTGTCGCGTCCGATATTCA
GCGGCTGGTGGATCACCCCCTGGGGGGCCGGCGACCCGGTGGAGCCAAACCCCTGGCCGAACTGG
CCCGGGGGCCCGGGGGGCTGGTTGAAGTTCTGGTTCTGGTTGAAT
Right flanking sequence: Indices 34794 -- 35293
GGCTGGCCTGGCTGGCCCGGCTGGCCTTGGTTCTGGTCGTTGTTGAAGCCTCCCGGGGGGTACGG
CTGCCCGTACTGGCTCGAATTGTCCGCTGCTGGCGGCGGAGGCGGCGGTTGGGCACTGCCCTCGG
GATTGGGTGTTTCCAGCCCCTGGGGGGCCCCGGGAGCCGCGGTGTTGGGCTGGGTGGGGGTGGAC
TCGTCTTTTCCATCCTGCACGGGGGTCGCGGACGCCGTCTTTTCGTCGCTCGGCTTGTCGTCCTT
CACGTCGACCTTGGTGTCCTCGTCATCACCACTGGACGGTTAGTATCGAAGATGGTAGCGGAGGT
GGTGGGGTCGACTTACTAGATATCATCGAAGATGGCTTCGTCGTCGGACATTTACTTAGTCTAAG
TTATATGAATGCCTTTATTGGAAATAAACAGATATACCAATCTAACTCCCCTATGTAGTCCTTGT
CGATGTTGCGGCGAAGGCCAACGAAATGGTCGCGCGAGCGGTCAC
Found at i:34801 original size:9 final size:9
Alignment explanation
Indices: 34787--34819 Score: 57
Period size: 9 Copynumber: 3.7 Consensus size: 9
34777 GGCCCTGGTT
34787 CTGGCCCGG
1 CTGGCCCGG
*
34796 CTGGCCTGG
1 CTGGCCCGG
34805 CTGGCCCGG
1 CTGGCCCGG
34814 CTGGCC
1 CTGGCC
34820 TTGGTTCTGG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
9 22 1.00
ACGTcount: A:0.00, C:0.42, G:0.42, T:0.15
Consensus pattern (9 bp):
CTGGCCCGG
Left flanking sequence: Indices 34287 -- 34786
TTACCTACCTTGTCCTGCTCCTCGCGAGCAATTGCCCGCTTCGGGTCAATGAGCTTGCCGTCCAA
AATATGGTCTTGTTTGATTACCTGTTCCACCAGCGCCGGGTCGGCAAACGTGAGGAACCCGAACC
CACGCGACTTGCCGGTGTTGTTGTCCCGCATGATCGTGTGGTCTAGCACCTCGCCAAACTTGCTA
AAATACGCTACAAGCCCCTCCTCGGTGGTGTCCCAGTTGAGGCCGCCAATAAACATTTTGCCGGT
GTCGCGTCCGATATTCAGCGGCTGGTGGATCACCCCCTGGGGGGCCGGCGACCCGGTGGAGCCAA
ACCCCTGGCCGAACTGGCCCGGGGGCCCGGGGGGCTGGTTGAAGTTCTGGTTCTGGTTGAATTGG
CCCGGGTTCTGCCCAAACTGGCCCTGGTTGCCGTACTGGCCCTGGTTCTGGCCCTGGTTCTGGCC
CTGGTTCTGCCCGAACTGGCTCTGGTCGCCGTACTGGCCCTGGTT
Right flanking sequence: Indices 34820 -- 35319
TTGGTTCTGGTCGTTGTTGAAGCCTCCCGGGGGGTACGGCTGCCCGTACTGGCTCGAATTGTCCG
CTGCTGGCGGCGGAGGCGGCGGTTGGGCACTGCCCTCGGGATTGGGTGTTTCCAGCCCCTGGGGG
GCCCCGGGAGCCGCGGTGTTGGGCTGGGTGGGGGTGGACTCGTCTTTTCCATCCTGCACGGGGGT
CGCGGACGCCGTCTTTTCGTCGCTCGGCTTGTCGTCCTTCACGTCGACCTTGGTGTCCTCGTCAT
CACCACTGGACGGTTAGTATCGAAGATGGTAGCGGAGGTGGTGGGGTCGACTTACTAGATATCAT
CGAAGATGGCTTCGTCGTCGGACATTTACTTAGTCTAAGTTATATGAATGCCTTTATTGGAAATA
AACAGATATACCAATCTAACTCCCCTATGTAGTCCTTGTCGATGTTGCGGCGAAGGCCAACGAAA
TGGTCGCGCGAGCGGTCACGTGCGCGCGCTACCGTGTCGGGTGTG
Found at i:36426 original size:9 final size:9
Alignment explanation
Indices: 36406--36470 Score: 64
Period size: 9 Copynumber: 7.3 Consensus size: 9
36396 AGTATCCCTG
36406 CTTTCTTCTC
1 CTTTC-TCTC
36416 CTTTCTCTC
1 CTTTCTCTC
*
36425 CTATCTCTC
1 CTTTCTCTC
* *
36434 CCTTCCCT-
1 CTTTCTCTC
36442 CTTTCTCTC
1 CTTTCTCTC
36451 C-TTCTCTC
1 CTTTCTCTC
36459 C-TTCTCTTC
1 CTTTCTC-TC
36468 CTT
1 CTT
36471 CCCACCGTTC
Statistics
Matches: 46, Mismatches: 6, Indels: 6
0.79 0.10 0.10
Matches are distributed among these distances:
8 19 0.41
9 21 0.46
10 6 0.13
ACGTcount: A:0.02, C:0.46, G:0.00, T:0.52
Consensus pattern (9 bp):
CTTTCTCTC
Left flanking sequence: Indices 35906 -- 36405
GGACATGTCACCACCAGCCATCGCGTGTGTGCCCCTCATGTAGCCACCAGAGTGCAGCTCGCTAG
TCAGCCGCGCCTTCGCTAAGCCCGAACTCAGCAGGAGATAGACATACCGCGTGGTAATCTTGCCC
ATCACCACCACTACCACTACTACCACCACCATGACCACTAACACCAATCACCAACAGAACCGCAA
TCTCTACTCCCCTATAACCCCTTTGTGGCTTACAGCTCATCTCACAGACTGCAGCGTAGACGACC
AGCTAGCCGACGACGCGCGCTCGCGTGACAGTCGCCCAGCCAGCCCGTCACCACGTGCCATTGCT
TTTGCGAGCTCGTCTGACCAGTGCCTACTATGTTGTTGTTACCATCACTCGTCTACTTTCTCAAC
GCATTCTTCTTTCTGTTCCTTTACTTCCTCTCGTCTTTCCCTACCTTTGCCTTTCATTTCGTCTT
TTCTCGTCCTCCCCTACTTCCCCAGACTTTCCCAAAGTATCCCTG
Right flanking sequence: Indices 36471 -- 36970
CCCACCGTTCCCATCCGTCTTGTTCCCCTTCTTCCCTTCTTGTTCATCCCTTCTCGTTCCCATAA
CCACGCACTACCAGCGCACCAAAAACCACACCAAAACACCATAACAACCACCCGTAAACCACGCC
AAAAACACCTAAAAAGCACCCAAAAACCACCCAACGCCGCCGAGATAAGCGCTGGGGGGTCTGGG
GGGCGCCGCCTGCGGCCCCCCAGCAGCCACACCCGCCCAATGCCCCTCTGCCCCCCCTTACATAC
TCATCTCTCCGTTCGCAGCGATGTATCACCACCACCCCACACCCACGCAAAACAACCCCAAACCC
CCGTAAACACCCACCACACAGCCCACCCACCCGCTCTAAACACACCCACACCCACCAATCCCCCA
ACCAGCCACTCCACCCCACCACTCCCCCACCACTCCACCACCCCACCTCTCATCACCTTCCACCG
TCCCACGCACTTTTTTCGCACTTTTTTCCACCGTTGCCACTACGA
Found at i:36465 original size:33 final size:37
Alignment explanation
Indices: 36400--36473 Score: 111
Period size: 33 Copynumber: 2.1 Consensus size: 37
36390 TCCCAAAGTA
36400 TCCCTGCTTTCTTCTCCTTTCTCTCCTATCTCTCCCT
1 TCCCTGCTTTCTTCTCCTTTCTCTCCTATCTCTCCCT
*
36437 TCCCT-CTTTC-TCTCC-TTCTCTCCT-TCTCTTCCT
1 TCCCTGCTTTCTTCTCCTTTCTCTCCTATCTCTCCCT
36470 TCCC
1 TCCC
36474 ACCGTTCCCA
Statistics
Matches: 36, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
33 12 0.33
34 9 0.25
35 5 0.14
36 5 0.14
37 5 0.14
ACGTcount: A:0.01, C:0.49, G:0.01, T:0.49
Consensus pattern (37 bp):
TCCCTGCTTTCTTCTCCTTTCTCTCCTATCTCTCCCT
Left flanking sequence: Indices 35900 -- 36399
CAGCGAGGACATGTCACCACCAGCCATCGCGTGTGTGCCCCTCATGTAGCCACCAGAGTGCAGCT
CGCTAGTCAGCCGCGCCTTCGCTAAGCCCGAACTCAGCAGGAGATAGACATACCGCGTGGTAATC
TTGCCCATCACCACCACTACCACTACTACCACCACCATGACCACTAACACCAATCACCAACAGAA
CCGCAATCTCTACTCCCCTATAACCCCTTTGTGGCTTACAGCTCATCTCACAGACTGCAGCGTAG
ACGACCAGCTAGCCGACGACGCGCGCTCGCGTGACAGTCGCCCAGCCAGCCCGTCACCACGTGCC
ATTGCTTTTGCGAGCTCGTCTGACCAGTGCCTACTATGTTGTTGTTACCATCACTCGTCTACTTT
CTCAACGCATTCTTCTTTCTGTTCCTTTACTTCCTCTCGTCTTTCCCTACCTTTGCCTTTCATTT
CGTCTTTTCTCGTCCTCCCCTACTTCCCCAGACTTTCCCAAAGTA
Right flanking sequence: Indices 36474 -- 36973
ACCGTTCCCATCCGTCTTGTTCCCCTTCTTCCCTTCTTGTTCATCCCTTCTCGTTCCCATAACCA
CGCACTACCAGCGCACCAAAAACCACACCAAAACACCATAACAACCACCCGTAAACCACGCCAAA
AACACCTAAAAAGCACCCAAAAACCACCCAACGCCGCCGAGATAAGCGCTGGGGGGTCTGGGGGG
CGCCGCCTGCGGCCCCCCAGCAGCCACACCCGCCCAATGCCCCTCTGCCCCCCCTTACATACTCA
TCTCTCCGTTCGCAGCGATGTATCACCACCACCCCACACCCACGCAAAACAACCCCAAACCCCCG
TAAACACCCACCACACAGCCCACCCACCCGCTCTAAACACACCCACACCCACCAATCCCCCAACC
AGCCACTCCACCCCACCACTCCCCCACCACTCCACCACCCCACCTCTCATCACCTTCCACCGTCC
CACGCACTTTTTTCGCACTTTTTTCCACCGTTGCCACTACGACCA
Found at i:36471 original size:9 final size:8
Alignment explanation
Indices: 36412--36471 Score: 66
Period size: 8 Copynumber: 7.0 Consensus size: 8
36402 CCTGCTTTCT
36412 TCTCCTTTC
1 TCTCC-TTC
36421 TCTCCTATC
1 TCTCCT-TC
36430 TCTCCCTTC
1 TCT-CCTTC
* *
36439 CCTCTTTC
1 TCTCCTTC
36447 TCTCCTTC
1 TCTCCTTC
36455 TCTCCTTC
1 TCTCCTTC
36463 TCTTCCTTC
1 TC-TCCTTC
36472 CCACCGTTCC
Statistics
Matches: 44, Mismatches: 4, Indels: 6
0.81 0.07 0.11
Matches are distributed among these distances:
8 21 0.48
9 20 0.45
10 3 0.07
ACGTcount: A:0.02, C:0.48, G:0.00, T:0.50
Consensus pattern (8 bp):
TCTCCTTC
Left flanking sequence: Indices 35912 -- 36411
GTCACCACCAGCCATCGCGTGTGTGCCCCTCATGTAGCCACCAGAGTGCAGCTCGCTAGTCAGCC
GCGCCTTCGCTAAGCCCGAACTCAGCAGGAGATAGACATACCGCGTGGTAATCTTGCCCATCACC
ACCACTACCACTACTACCACCACCATGACCACTAACACCAATCACCAACAGAACCGCAATCTCTA
CTCCCCTATAACCCCTTTGTGGCTTACAGCTCATCTCACAGACTGCAGCGTAGACGACCAGCTAG
CCGACGACGCGCGCTCGCGTGACAGTCGCCCAGCCAGCCCGTCACCACGTGCCATTGCTTTTGCG
AGCTCGTCTGACCAGTGCCTACTATGTTGTTGTTACCATCACTCGTCTACTTTCTCAACGCATTC
TTCTTTCTGTTCCTTTACTTCCTCTCGTCTTTCCCTACCTTTGCCTTTCATTTCGTCTTTTCTCG
TCCTCCCCTACTTCCCCAGACTTTCCCAAAGTATCCCTGCTTTCT
Right flanking sequence: Indices 36472 -- 36971
CCACCGTTCCCATCCGTCTTGTTCCCCTTCTTCCCTTCTTGTTCATCCCTTCTCGTTCCCATAAC
CACGCACTACCAGCGCACCAAAAACCACACCAAAACACCATAACAACCACCCGTAAACCACGCCA
AAAACACCTAAAAAGCACCCAAAAACCACCCAACGCCGCCGAGATAAGCGCTGGGGGGTCTGGGG
GGCGCCGCCTGCGGCCCCCCAGCAGCCACACCCGCCCAATGCCCCTCTGCCCCCCCTTACATACT
CATCTCTCCGTTCGCAGCGATGTATCACCACCACCCCACACCCACGCAAAACAACCCCAAACCCC
CGTAAACACCCACCACACAGCCCACCCACCCGCTCTAAACACACCCACACCCACCAATCCCCCAA
CCAGCCACTCCACCCCACCACTCCCCCACCACTCCACCACCCCACCTCTCATCACCTTCCACCGT
CCCACGCACTTTTTTCGCACTTTTTTCCACCGTTGCCACTACGAC
Found at i:36595 original size:33 final size:31
Alignment explanation
Indices: 36554--36634 Score: 90
Period size: 33 Copynumber: 2.5 Consensus size: 31
36544 TACCAGCGCA
*
36554 CCAAAAACCACACCAAAACACCATAACAACCAC
1 CCAAAAACCAC-CCAAAACACC-TAAAAACCAC
** *
36587 CCGTAAACCACGCCAAAAACACCTAAAAAGCAC
1 CCAAAAACCAC-CC-AAAACACCTAAAAACCAC
36620 CCAAAAACCACCCAA
1 CCAAAAACCACCCAA
36635 CGCCGCCGAG
Statistics
Matches: 40, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
31 2 0.05
32 2 0.05
33 28 0.70
34 8 0.20
ACGTcount: A:0.52, C:0.41, G:0.04, T:0.04
Consensus pattern (31 bp):
CCAAAAACCACCCAAAACACCTAAAAACCAC
Left flanking sequence: Indices 36054 -- 36553
ACTACCACCACCATGACCACTAACACCAATCACCAACAGAACCGCAATCTCTACTCCCCTATAAC
CCCTTTGTGGCTTACAGCTCATCTCACAGACTGCAGCGTAGACGACCAGCTAGCCGACGACGCGC
GCTCGCGTGACAGTCGCCCAGCCAGCCCGTCACCACGTGCCATTGCTTTTGCGAGCTCGTCTGAC
CAGTGCCTACTATGTTGTTGTTACCATCACTCGTCTACTTTCTCAACGCATTCTTCTTTCTGTTC
CTTTACTTCCTCTCGTCTTTCCCTACCTTTGCCTTTCATTTCGTCTTTTCTCGTCCTCCCCTACT
TCCCCAGACTTTCCCAAAGTATCCCTGCTTTCTTCTCCTTTCTCTCCTATCTCTCCCTTCCCTCT
TTCTCTCCTTCTCTCCTTCTCTTCCTTCCCACCGTTCCCATCCGTCTTGTTCCCCTTCTTCCCTT
CTTGTTCATCCCTTCTCGTTCCCATAACCACGCACTACCAGCGCA
Right flanking sequence: Indices 36635 -- 37134
CGCCGCCGAGATAAGCGCTGGGGGGTCTGGGGGGCGCCGCCTGCGGCCCCCCAGCAGCCACACCC
GCCCAATGCCCCTCTGCCCCCCCTTACATACTCATCTCTCCGTTCGCAGCGATGTATCACCACCA
CCCCACACCCACGCAAAACAACCCCAAACCCCCGTAAACACCCACCACACAGCCCACCCACCCGC
TCTAAACACACCCACACCCACCAATCCCCCAACCAGCCACTCCACCCCACCACTCCCCCACCACT
CCACCACCCCACCTCTCATCACCTTCCACCGTCCCACGCACTTTTTTCGCACTTTTTTCCACCGT
TGCCACTACGACCACCATGGACAGCGACGCCACCAACCGCTTTGTGCCCGAGTACCGCCGGACCC
AGTTCAAAAACAAGGGCCGCTTTGCCAACGACGAGCTCCGGCGCCGCCGCGAGAACCACCAGGTG
GACCTCCGCAAGCAGAAGCGCGAGGAAATGTTGCTGAAACGCCGC
Found at i:39035 original size:12 final size:12
Alignment explanation
Indices: 39018--39048 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
39008 GGTTTTGGTG
*
39018 GTAGCTTGGGTT
1 GTAGCTTGGGTC
39030 GTAGCTTGGGTC
1 GTAGCTTGGGTC
39042 GTAGCTT
1 GTAGCTT
39049 AAGTGGTATC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.10, C:0.13, G:0.39, T:0.39
Consensus pattern (12 bp):
GTAGCTTGGGTC
Left flanking sequence: Indices 38518 -- 39017
GAGGAGGACGAGGGGATCGAGGACGACATGACGGCGCCGGCGGCGTACGACTCCCACTACAACTT
TGGCTTGCAGCAGGGACAGCAGAACCAGAACTTCCAGTTTTAGGCTGGCGACTACATCTTATGAG
CCCATTTTATAGCATCTCTAATAATACATCTCTATAAAGTAGTGCGGTGCCTTGTATTATAATTT
AAATTCAGGTAAGGTGGGGGGGTGAGGTTAGTAGGGTGGTTGGCGTGGTGAGGTTAGTAGGGTGG
TGTGGGGTTGGCGTGGTGGGGTGGTTGTACTAGAGTAGTATGGGAGGTCGTGGGACAGTTAGCCA
TATGGGTGGTTTGCATTGTGATGTAGTTACGGTGGAGTTGATGTTGGTTGGGGTACTAGTATGGT
TGGTGGGATTAGTATTGTTACGTGGTATCAGTAGCTACACCCATTTGGGTAGGCTAGTGTGTGTG
GCTTACGAGTGGTATGAAAAGTAGGCTGTATGGGTGGTTTTGGTG
Right flanking sequence: Indices 39049 -- 39548
AAGTGGTATCAGTGGTGGCATGGGTAGTAGTGTGGACGAGTGATAATATGCTTATTGAATTGTTC
TACTTCCTCTAGGTTGGTTTAGGTGGTTGGTTTCGTAATCGGTGTTTTTGGCTTCTTACGAGTAG
TCGTTGGCGTTGTTGATCATTTGAATGCATTGGGATTGGGGTAGTGAATTGGAGAGGGGATTGAA
CGTGCGTTTGGTGTGGTTTGTTGGTTGAAATTGGTTAGTGTGGTCAGAGTACGGTACCCTGATGT
GGTTGTGGTAGGCTATAAGGCTGGAAGTAGGTAGAGACTGGTATGCCACCGGCAAAGGATACGGT
GAAAATGGCCGTTTAAGCTGGTTGACAACCTTTCAAACACACGTTGCCCTCCGTGGGCTATCACT
ACTGTCGCAAGCCATGAACGCGGGCATATCTTAACCCCTTTTGTACACCTGGCTAGAATCGCTCA
AGAGATGTGTAGAACCTGTCGAATGCTTGACTACGCTAGTTACGT
Found at i:39836 original size:11 final size:11
Alignment explanation
Indices: 39820--39879 Score: 75
Period size: 11 Copynumber: 5.4 Consensus size: 11
39810 TAAACTCTTT
39820 CCACCACCTTC
1 CCACCACCTTC
* *
39831 CCACCACCGTG
1 CCACCACCTTC
* *
39842 TCACCGCCTTC
1 CCACCACCTTC
39853 CCACCACCTTC
1 CCACCACCTTC
39864 CCACCACCTTC
1 CCACCACCTTC
39875 TCCAC
1 -CCAC
39880 TTTCTCACCA
Statistics
Matches: 40, Mismatches: 8, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
11 36 0.90
12 4 0.10
ACGTcount: A:0.17, C:0.60, G:0.05, T:0.18
Consensus pattern (11 bp):
CCACCACCTTC
Left flanking sequence: Indices 39320 -- 39819
GCTATAAGGCTGGAAGTAGGTAGAGACTGGTATGCCACCGGCAAAGGATACGGTGAAAATGGCCG
TTTAAGCTGGTTGACAACCTTTCAAACACACGTTGCCCTCCGTGGGCTATCACTACTGTCGCAAG
CCATGAACGCGGGCATATCTTAACCCCTTTTGTACACCTGGCTAGAATCGCTCAAGAGATGTGTA
GAACCTGTCGAATGCTTGACTACGCTAGTTACGTGCTACGCCAATGGACTTGGTTTCTTCGGTTC
GAACCCGGTACGGGTGGTTGGTTAAATCCGTCCGTTTCCACATTCTTTCCAAATTTTTGACAAAT
ATTTTGTACTATGACAAGAAACCTTGGGTTCAATCACGATGTTTGAACGTCACTCAGCAACGTGT
GCCAAGCATCGTCTAATCACCATGGCCACTCATTTAGCAACCATCGCCTTTGTGTCGGCTAATAT
TTCCATCACGACGCCTAAGCCCCCGGGGAACCCCGTAAACTCTTT
Right flanking sequence: Indices 39880 -- 40379
TTTCTCACCACCTCCTTTTCTCTCCAGTTTCTCCACCCCTCTTCCACCCTTTGCCGTACATTAAC
CTACCGATAACGTTCATTACACTACCCAAACGGGCATAAACAATAACACACGAGGTCACCCGTAT
CCGTCACCAAAATGTCACCACAGCATACAAGCACACCTAAGACCACACTCTAATCACCCATAAAC
ACGTAACCACCCTTTACCCACCCCTCCTACGTTCCTCTCATGCCACATTCAACGGTCGGCTCGGT
AAAACACGCACTTACCGAATTAAGGTTACGCTAGCGGCAACTAGCCCGCACCGAAGCGGTCCACC
GCCAAACCGTCACACCCAGCACGCGCACCCCAGCACGCGCACCCGTTGCCGCATACCCCCATCCC
ACGCATCTCCACTAAACTCGCCTCGTCCACTCGCCCCATACCACCAAATTCCACGAGGCGTCCAA
GAAAATTCCCGAGTCACTCGAGGGGTAACCGTCCCGGGACACCCA
Found at i:39890 original size:11 final size:11
Alignment explanation
Indices: 39821--39892 Score: 67
Period size: 11 Copynumber: 6.7 Consensus size: 11
39811 AAACTCTTTC
*
39821 CACCACCTTCC
1 CACCACCTTCT
* *
39832 CACCACCGTGT
1 CACCACCTTCT
* *
39843 CACCGCCTTCC
1 CACCACCTTCT
*
39854 CACCACCTTCC
1 CACCACCTTCT
39865 CACCACCTTCT
1 CACCACCTTCT
*
39876 --CCACTTTCT
1 CACCACCTTCT
39885 CACCACCT
1 CACCACCT
39893 CCTTTTCTCT
Statistics
Matches: 48, Mismatches: 11, Indels: 4
0.76 0.17 0.06
Matches are distributed among these distances:
9 8 0.17
11 40 0.83
ACGTcount: A:0.17, C:0.57, G:0.04, T:0.22
Consensus pattern (11 bp):
CACCACCTTCT
Left flanking sequence: Indices 39321 -- 39820
CTATAAGGCTGGAAGTAGGTAGAGACTGGTATGCCACCGGCAAAGGATACGGTGAAAATGGCCGT
TTAAGCTGGTTGACAACCTTTCAAACACACGTTGCCCTCCGTGGGCTATCACTACTGTCGCAAGC
CATGAACGCGGGCATATCTTAACCCCTTTTGTACACCTGGCTAGAATCGCTCAAGAGATGTGTAG
AACCTGTCGAATGCTTGACTACGCTAGTTACGTGCTACGCCAATGGACTTGGTTTCTTCGGTTCG
AACCCGGTACGGGTGGTTGGTTAAATCCGTCCGTTTCCACATTCTTTCCAAATTTTTGACAAATA
TTTTGTACTATGACAAGAAACCTTGGGTTCAATCACGATGTTTGAACGTCACTCAGCAACGTGTG
CCAAGCATCGTCTAATCACCATGGCCACTCATTTAGCAACCATCGCCTTTGTGTCGGCTAATATT
TCCATCACGACGCCTAAGCCCCCGGGGAACCCCGTAAACTCTTTC
Right flanking sequence: Indices 39893 -- 40392
CCTTTTCTCTCCAGTTTCTCCACCCCTCTTCCACCCTTTGCCGTACATTAACCTACCGATAACGT
TCATTACACTACCCAAACGGGCATAAACAATAACACACGAGGTCACCCGTATCCGTCACCAAAAT
GTCACCACAGCATACAAGCACACCTAAGACCACACTCTAATCACCCATAAACACGTAACCACCCT
TTACCCACCCCTCCTACGTTCCTCTCATGCCACATTCAACGGTCGGCTCGGTAAAACACGCACTT
ACCGAATTAAGGTTACGCTAGCGGCAACTAGCCCGCACCGAAGCGGTCCACCGCCAAACCGTCAC
ACCCAGCACGCGCACCCCAGCACGCGCACCCGTTGCCGCATACCCCCATCCCACGCATCTCCACT
AAACTCGCCTCGTCCACTCGCCCCATACCACCAAATTCCACGAGGCGTCCAAGAAAATTCCCGAG
TCACTCGAGGGGTAACCGTCCCGGGACACCCACGCCCGCCACGTG
Found at i:40238 original size:14 final size:14
Alignment explanation
Indices: 40219--40248 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
40209 AACCGTCACA
40219 CCCAGCACGCGCAC
1 CCCAGCACGCGCAC
40233 CCCAGCACGCGCAC
1 CCCAGCACGCGCAC
40247 CC
1 CC
40249 GTTGCCGCAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.20, C:0.60, G:0.20, T:0.00
Consensus pattern (14 bp):
CCCAGCACGCGCAC
Left flanking sequence: Indices 39719 -- 40218
CGTCTAATCACCATGGCCACTCATTTAGCAACCATCGCCTTTGTGTCGGCTAATATTTCCATCAC
GACGCCTAAGCCCCCGGGGAACCCCGTAAACTCTTTCCACCACCTTCCCACCACCGTGTCACCGC
CTTCCCACCACCTTCCCACCACCTTCTCCACTTTCTCACCACCTCCTTTTCTCTCCAGTTTCTCC
ACCCCTCTTCCACCCTTTGCCGTACATTAACCTACCGATAACGTTCATTACACTACCCAAACGGG
CATAAACAATAACACACGAGGTCACCCGTATCCGTCACCAAAATGTCACCACAGCATACAAGCAC
ACCTAAGACCACACTCTAATCACCCATAAACACGTAACCACCCTTTACCCACCCCTCCTACGTTC
CTCTCATGCCACATTCAACGGTCGGCTCGGTAAAACACGCACTTACCGAATTAAGGTTACGCTAG
CGGCAACTAGCCCGCACCGAAGCGGTCCACCGCCAAACCGTCACA
Right flanking sequence: Indices 40249 -- 40748
GTTGCCGCATACCCCCATCCCACGCATCTCCACTAAACTCGCCTCGTCCACTCGCCCCATACCAC
CAAATTCCACGAGGCGTCCAAGAAAATTCCCGAGTCACTCGAGGGGTAACCGTCCCGGGACACCC
ACGCCCGCCACGTGTGGTCACCACCATCTTCTCACTCTACTCACTCTACCCACTCTACCCGTACA
CAGCAACGCTGCCACCGTCATCCTTGCTAGTCATCTCTCGTCGGTTACACGGCTACGTCGCCGTG
ACCACCTCCGTCACGAACCCTTACCCGAGCTCATCGCCGGGTCGGACCACACCCCATTGTTGGTC
ACCCCGACCCACTACTGCGCACCCAGGGTTCCCTAAACGCCTCGTGTGGTGCCTCTACCCCTGTT
CGCCCGCGAAGCTTCCCCACTTCCCTCGTCTTATCTGCATGGTGGAACGCCGTTAGTGCCGGGTT
CCAGCCGACATTTTCAGCGCGCGTGGAAATAGCCGGGCCCGGGCG
Found at i:41407 original size:15 final size:15
Alignment explanation
Indices: 41387--41417 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
41377 AACGGTACCG
41387 CTGCCACCAACGGCA
1 CTGCCACCAACGGCA
41402 CTGCCACCAACGGCA
1 CTGCCACCAACGGCA
41417 C
1 C
41418 CAACGGTACC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.26, C:0.48, G:0.19, T:0.06
Consensus pattern (15 bp):
CTGCCACCAACGGCA
Left flanking sequence: Indices 40887 -- 41386
GTACCCCACGGCGACGACGCGAACCAGGGGAAAACCCGGCCAGGCTTGGCAATGGACTGCCAACA
CCCCCTACACACTAACCCGAAACCACCACCCACCCACGCCCGCTCCCGCTCCACCTGCCCGGCCC
CGTCCCATTCCGTTCGCTCCGGTTCATCGTGCGTTATTTAGAAAACAAACTGTATGCACACCTAA
CGAATATCCCTCAAAAATTTTTTGTCAACCGTATATAACCGGGCCGCGCCCCTGCAATAAAATTT
CACCAAAAATGAAGTTCACTTCCGTTGTCGCCATCGCCTCGACCGCTGCCCTTGTTGCCGCCAAG
GACAAGCCCAACCACATGGAGGTCACCAAGACCATCACCAAGGAGGGCTGGAACCCCAAGGCCAC
CCACAAGTACGGCCGTTTCGACCACACCACCCGTGTGGCCACCACCACTGTGTGGACCGGTGAGC
AGCCCTCCGCTGCCGCTGTCCAGAAGCGTGCCGTGAACGGTACCG
Right flanking sequence: Indices 41418 -- 41917
CAACGGTACCAACGGTACTGGTTCCGGTGACAAGGAGAACGCCGCCAACCACTTGGGTGTTGCCG
GTGCTGTCATTGCCGGTGCCTTGTTGTTGTTGTAAGCGCTCTAATACCCACTGTTTGCGGCGGTG
ATGTACACTAATAAGAGAACGTAGCATAAGGTCTATAATCGAATAAACTTTTTAATAATTTTGCA
ACCGGGGTTGCGTGCCCGGAGCGATGTTTACGTATTGCTTTTTGCGGCCGACCCCGACGCAGGCT
GTGTGCAGGAGCTTGGCGGTTATGGAAGGACGAAGAGACGGGAACGGGATGGGACGGGGCGTGGC
TGGGGGAACGGGGTTCGGTTTGGCGCGGTGGGAGAAGCTTGGTTGTGTGCTTTTTTCGCCAATTG
CCTCGGTGCTCGCCCGGCGGTGGGGGCCCGGACAAATGCGTCCGAGGGGTACTTGAAATTGTGGC
TATCAGCAGATAGACATGAAATAGGGATGATGAGTAGCAAGGGAA
Found at i:43965 original size:8 final size:8
Alignment explanation
Indices: 43952--43976 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
43942 GTGGCGAAGG
43952 TAGACCGA
1 TAGACCGA
43960 TAGACCGA
1 TAGACCGA
43968 TAGACCGA
1 TAGACCGA
43976 T
1 T
43977 CGCTATATCT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.36, C:0.24, G:0.24, T:0.16
Consensus pattern (8 bp):
TAGACCGA
Left flanking sequence: Indices 43452 -- 43951
AAGGTGTTGATCCCTTGGAAGGGCCACAACAGGCCCCAGCGATCCTCGAGGGGTGTGGTGCCCGA
CGAGTTGAACTCCAAGGGGATCTGGTCAGCAGCAGCAACAACGGCTAGGGCGAGAGCGAGCAAGG
TTTTCATTGCCGACGTTGATGGCAACACCGTGATTTATAGCTGTCAACGGGGTACGGGCCCTGGT
CACCGTTATCGCGGGGGCTAGCCGCTAAGCTAAGCCGACAGGGATGAGGGTTCAGAGGCACAAAC
GAGTGCTTGGGGGGCACGTAAACTGGCTGAGACGTAAGACTGTGTAAATAGGCTGCATGAGGTAG
TCACGACCCGAGTTTGTGGCTAGGAAAATGCCCTTTTCTCGACTTTTGGCTTCCTTCTGAAAGTC
GTACCATGGCAGCGGGTCGGGAGATGAAGCAAGTGTAATCGAGGAAGGGCTAACACCAGCTGGAT
CGCCGCATGATACTCACTAGCGGCTAACAGCGCCAGTGGCGAAGG
Right flanking sequence: Indices 43977 -- 44476
CGCTATATCTACATCCGTACTGTCCCAAAGCGGCAATTTGCGACAATCACTTATTGAGTTGATTA
CTTACAATGCAGGGTATTAGCTACTCACAGGCACCGGGCCTAAATGTTGCGGTTCCACACGCCAT
TGCGGTAGGTCCAGCTACCCAAATGACGGCGTTCAATGGTGTGTTCCACCAACCCCTCGAGCAAC
CGCGCGGGGATGTAGAAGCGGTACCGACGCTCCAACTCGTCCTTCATTTTGTCGGTTTCGCAGCT
GTTGCGGGTGTTTAAATACAGGTAGAGCCAGGATAACGCTCTCAGGAGCGGTTCGGGGTCGAGAG
CGCTGCCGCTCTCGTTGTCCCTGCGTTTGACGAGGTTGGTAACCAAGAGATTGGCACACACCCGC
TTGAAAAGACTAGCAGGGCGCACCTTGGCTAACTTGTCGACCCGCTGAGTGACCCGCCGCGTTCG
CGTGTAGTCAATGACGGCCTCGTGAAGCCTCCGGTGCTTCAAGAG
Found at i:51542 original size:11 final size:11
Alignment explanation
Indices: 51499--51569 Score: 81
Period size: 11 Copynumber: 6.3 Consensus size: 11
51489 ACGAAGAACG
51499 AACAAGAATAAA
1 AACAAGAAT-AA
51511 AACGAAG-ATAA
1 AAC-AAGAATAA
51522 AACAAGGAATAA
1 AACAA-GAATAA
51534 AACAAGAATAA
1 AACAAGAATAA
* *
51545 AACAAGAGTAG
1 AACAAGAATAA
*
51556 AACAAAAATAA
1 AACAAGAATAA
51567 AAC
1 AAC
51570 TAGTAGAACC
Statistics
Matches: 51, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
10 2 0.04
11 32 0.63
12 14 0.27
13 3 0.06
ACGTcount: A:0.69, C:0.10, G:0.13, T:0.08
Consensus pattern (11 bp):
AACAAGAATAA
Left flanking sequence: Indices 50999 -- 51498
CACCACCAGAAAACACCACGACGGGTCACACCCCGGAGCACGTAGCCACGGTCCACCGGACCCCG
TTCAAAGCCACCCATCGGGCCTCAACGTGCCTGCGGTTGGCCAGATCTTGCAGATCCGTGTTTTC
TTTTTCGGCACGATTGTTCTATTTTGTCTCGTTGACGAGGATCGTTGACACATTCCTTCGGGAAC
GTGGTGCCATACCCTGTAGATCTGTAGCGTAAACACTCAGAGGGTGCTAAGGACAAGAAACCAAG
AACTAAGATACCAAAAACCAAGAAACGCTCGGCTCCACATCCCGGGCCGGTCGCCAGCCAATCAG
ACGCCCCGTTCCAGCCACCTCACGGGCCGTCACCCACGGGCTATTCTTAGCTGCACGGGACCACA
CCGGCCGCGGCTCCTTCCTAGTTAGGATATCGGATGGCTCCACTATCGCCGTCTACGCGAGAAAG
GCTTGAGAGAATAAGAGGACAGAATAATAAAACGAACGAAGAACG
Right flanking sequence: Indices 51570 -- 52069
TAGTAGAACCACAACCACACCACAACCACCCCACAACACAACACTTCCCATCCCTACCCCATCCG
TAGCAACACCGTGCCCCCTACCTCGCCCCTACCTCGCCCTACCTCGCCCCTACCTCGCCCCTACA
TCGCTTCTACCGTCACTGCACGGCCCGCCTCCGGAACCACCGCATGCGCAGTTTGCGTGATTTAG
CCCACGGCAGGCAGTGCCGGCAGACGACACGGCCGTAGTCGCCGCCGCTACCCCCATAGACCCTG
TTGTTCATATCTGACTAAGTCTCACCGTCTCAGCCTCTTAGTCACACCTTGATAATCTGATAATA
GGGGCGACATATACCCCCGTAGATCTCGCCCGCCACCGGCCCCACGCCAAAACCAAGCACACCGC
CAGCACCACCAGCACCCACGCTACCCGCTGCCACCCTCACCAGCCCGCTACCGCCGCTGCCCACC
CCCGCCGTCCTCCACCGAACCGCCACTCCCGACCTGCACACGCCC
Found at i:51559 original size:22 final size:23
Alignment explanation
Indices: 51499--51569 Score: 74
Period size: 23 Copynumber: 3.1 Consensus size: 23
51489 ACGAAGAACG
* *
51499 AACAA-GAATAAAAACGAAGATAA
1 AACAAGGAAT-AAAACAAAAATAA
*
51522 AACAAGGAATAAAACAAGAATAA
1 AACAAGGAATAAAACAAAAATAA
* *
51545 AACAA-GAGTAGAACAAAAATAA
1 AACAAGGAATAAAACAAAAATAA
51567 AAC
1 AAC
51570 TAGTAGAACC
Statistics
Matches: 41, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
22 17 0.41
23 20 0.49
24 4 0.10
ACGTcount: A:0.69, C:0.10, G:0.13, T:0.08
Consensus pattern (23 bp):
AACAAGGAATAAAACAAAAATAA
Left flanking sequence: Indices 50999 -- 51498
CACCACCAGAAAACACCACGACGGGTCACACCCCGGAGCACGTAGCCACGGTCCACCGGACCCCG
TTCAAAGCCACCCATCGGGCCTCAACGTGCCTGCGGTTGGCCAGATCTTGCAGATCCGTGTTTTC
TTTTTCGGCACGATTGTTCTATTTTGTCTCGTTGACGAGGATCGTTGACACATTCCTTCGGGAAC
GTGGTGCCATACCCTGTAGATCTGTAGCGTAAACACTCAGAGGGTGCTAAGGACAAGAAACCAAG
AACTAAGATACCAAAAACCAAGAAACGCTCGGCTCCACATCCCGGGCCGGTCGCCAGCCAATCAG
ACGCCCCGTTCCAGCCACCTCACGGGCCGTCACCCACGGGCTATTCTTAGCTGCACGGGACCACA
CCGGCCGCGGCTCCTTCCTAGTTAGGATATCGGATGGCTCCACTATCGCCGTCTACGCGAGAAAG
GCTTGAGAGAATAAGAGGACAGAATAATAAAACGAACGAAGAACG
Right flanking sequence: Indices 51570 -- 52069
TAGTAGAACCACAACCACACCACAACCACCCCACAACACAACACTTCCCATCCCTACCCCATCCG
TAGCAACACCGTGCCCCCTACCTCGCCCCTACCTCGCCCTACCTCGCCCCTACCTCGCCCCTACA
TCGCTTCTACCGTCACTGCACGGCCCGCCTCCGGAACCACCGCATGCGCAGTTTGCGTGATTTAG
CCCACGGCAGGCAGTGCCGGCAGACGACACGGCCGTAGTCGCCGCCGCTACCCCCATAGACCCTG
TTGTTCATATCTGACTAAGTCTCACCGTCTCAGCCTCTTAGTCACACCTTGATAATCTGATAATA
GGGGCGACATATACCCCCGTAGATCTCGCCCGCCACCGGCCCCACGCCAAAACCAAGCACACCGC
CAGCACCACCAGCACCCACGCTACCCGCTGCCACCCTCACCAGCCCGCTACCGCCGCTGCCCACC
CCCGCCGTCCTCCACCGAACCGCCACTCCCGACCTGCACACGCCC
Found at i:51593 original size:11 final size:11
Alignment explanation
Indices: 51577--51606 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
51567 AACTAGTAGA
51577 ACCACAACCAC
1 ACCACAACCAC
51588 ACCACAACCAC
1 ACCACAACCAC
*
51599 CCCACAAC
1 ACCACAAC
51607 ACAACACTTC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.43, C:0.57, G:0.00, T:0.00
Consensus pattern (11 bp):
ACCACAACCAC
Left flanking sequence: Indices 51077 -- 51576
ATCGGGCCTCAACGTGCCTGCGGTTGGCCAGATCTTGCAGATCCGTGTTTTCTTTTTCGGCACGA
TTGTTCTATTTTGTCTCGTTGACGAGGATCGTTGACACATTCCTTCGGGAACGTGGTGCCATACC
CTGTAGATCTGTAGCGTAAACACTCAGAGGGTGCTAAGGACAAGAAACCAAGAACTAAGATACCA
AAAACCAAGAAACGCTCGGCTCCACATCCCGGGCCGGTCGCCAGCCAATCAGACGCCCCGTTCCA
GCCACCTCACGGGCCGTCACCCACGGGCTATTCTTAGCTGCACGGGACCACACCGGCCGCGGCTC
CTTCCTAGTTAGGATATCGGATGGCTCCACTATCGCCGTCTACGCGAGAAAGGCTTGAGAGAATA
AGAGGACAGAATAATAAAACGAACGAAGAACGAACAAGAATAAAAACGAAGATAAAACAAGGAAT
AAAACAAGAATAAAACAAGAGTAGAACAAAAATAAAACTAGTAGA
Right flanking sequence: Indices 51607 -- 52106
ACAACACTTCCCATCCCTACCCCATCCGTAGCAACACCGTGCCCCCTACCTCGCCCCTACCTCGC
CCTACCTCGCCCCTACCTCGCCCCTACATCGCTTCTACCGTCACTGCACGGCCCGCCTCCGGAAC
CACCGCATGCGCAGTTTGCGTGATTTAGCCCACGGCAGGCAGTGCCGGCAGACGACACGGCCGTA
GTCGCCGCCGCTACCCCCATAGACCCTGTTGTTCATATCTGACTAAGTCTCACCGTCTCAGCCTC
TTAGTCACACCTTGATAATCTGATAATAGGGGCGACATATACCCCCGTAGATCTCGCCCGCCACC
GGCCCCACGCCAAAACCAAGCACACCGCCAGCACCACCAGCACCCACGCTACCCGCTGCCACCCT
CACCAGCCCGCTACCGCCGCTGCCCACCCCCGCCGTCCTCCACCGAACCGCCACTCCCGACCTGC
ACACGCCCGAGTCGAAAAAAAAGCAAGTTGGGCAACACTGTCACC
Found at i:51675 original size:21 final size:22
Alignment explanation
Indices: 51649--51703 Score: 94
Period size: 21 Copynumber: 2.5 Consensus size: 22
51639 AACACCGTGC
51649 CCCCTACCTCGCCCCTACCTCG
1 CCCCTACCTCGCCCCTACCTCG
51671 -CCCTACCTCGCCCCTACCTCG
1 CCCCTACCTCGCCCCTACCTCG
*
51692 CCCCTACATCGC
1 CCCCTACCTCGC
51704 TTCTACCGTC
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
21 21 0.68
22 10 0.32
ACGTcount: A:0.11, C:0.62, G:0.09, T:0.18
Consensus pattern (22 bp):
CCCCTACCTCGCCCCTACCTCG
Left flanking sequence: Indices 51149 -- 51648
ATTTTGTCTCGTTGACGAGGATCGTTGACACATTCCTTCGGGAACGTGGTGCCATACCCTGTAGA
TCTGTAGCGTAAACACTCAGAGGGTGCTAAGGACAAGAAACCAAGAACTAAGATACCAAAAACCA
AGAAACGCTCGGCTCCACATCCCGGGCCGGTCGCCAGCCAATCAGACGCCCCGTTCCAGCCACCT
CACGGGCCGTCACCCACGGGCTATTCTTAGCTGCACGGGACCACACCGGCCGCGGCTCCTTCCTA
GTTAGGATATCGGATGGCTCCACTATCGCCGTCTACGCGAGAAAGGCTTGAGAGAATAAGAGGAC
AGAATAATAAAACGAACGAAGAACGAACAAGAATAAAAACGAAGATAAAACAAGGAATAAAACAA
GAATAAAACAAGAGTAGAACAAAAATAAAACTAGTAGAACCACAACCACACCACAACCACCCCAC
AACACAACACTTCCCATCCCTACCCCATCCGTAGCAACACCGTGC
Right flanking sequence: Indices 51704 -- 52203
TTCTACCGTCACTGCACGGCCCGCCTCCGGAACCACCGCATGCGCAGTTTGCGTGATTTAGCCCA
CGGCAGGCAGTGCCGGCAGACGACACGGCCGTAGTCGCCGCCGCTACCCCCATAGACCCTGTTGT
TCATATCTGACTAAGTCTCACCGTCTCAGCCTCTTAGTCACACCTTGATAATCTGATAATAGGGG
CGACATATACCCCCGTAGATCTCGCCCGCCACCGGCCCCACGCCAAAACCAAGCACACCGCCAGC
ACCACCAGCACCCACGCTACCCGCTGCCACCCTCACCAGCCCGCTACCGCCGCTGCCCACCCCCG
CCGTCCTCCACCGAACCGCCACTCCCGACCTGCACACGCCCGAGTCGAAAAAAAAGCAAGTTGGG
CAACACTGTCACCGGAGCCTACCCCTTGCCACGCCCGAACCCGACCCCCAGGCGCACAGACTCCG
TAGTGCGCACCCGCCTGTTGATTGTCATACCATGTCGCGCCAAGT
Found at i:51676 original size:10 final size:11
Alignment explanation
Indices: 51649--51703 Score: 94
Period size: 11 Copynumber: 5.1 Consensus size: 11
51639 AACACCGTGC
51649 CCCCTACCTCG
1 CCCCTACCTCG
51660 CCCCTACCTCG
1 CCCCTACCTCG
51671 -CCCTACCTCG
1 CCCCTACCTCG
51681 CCCCTACCTCG
1 CCCCTACCTCG
*
51692 CCCCTACATCG
1 CCCCTACCTCG
51703 C
1 C
51704 TTCTACCGTC
Statistics
Matches: 42, Mismatches: 1, Indels: 2
0.93 0.02 0.04
Matches are distributed among these distances:
10 10 0.24
11 32 0.76
ACGTcount: A:0.11, C:0.62, G:0.09, T:0.18
Consensus pattern (11 bp):
CCCCTACCTCG
Left flanking sequence: Indices 51149 -- 51648
ATTTTGTCTCGTTGACGAGGATCGTTGACACATTCCTTCGGGAACGTGGTGCCATACCCTGTAGA
TCTGTAGCGTAAACACTCAGAGGGTGCTAAGGACAAGAAACCAAGAACTAAGATACCAAAAACCA
AGAAACGCTCGGCTCCACATCCCGGGCCGGTCGCCAGCCAATCAGACGCCCCGTTCCAGCCACCT
CACGGGCCGTCACCCACGGGCTATTCTTAGCTGCACGGGACCACACCGGCCGCGGCTCCTTCCTA
GTTAGGATATCGGATGGCTCCACTATCGCCGTCTACGCGAGAAAGGCTTGAGAGAATAAGAGGAC
AGAATAATAAAACGAACGAAGAACGAACAAGAATAAAAACGAAGATAAAACAAGGAATAAAACAA
GAATAAAACAAGAGTAGAACAAAAATAAAACTAGTAGAACCACAACCACACCACAACCACCCCAC
AACACAACACTTCCCATCCCTACCCCATCCGTAGCAACACCGTGC
Right flanking sequence: Indices 51704 -- 52203
TTCTACCGTCACTGCACGGCCCGCCTCCGGAACCACCGCATGCGCAGTTTGCGTGATTTAGCCCA
CGGCAGGCAGTGCCGGCAGACGACACGGCCGTAGTCGCCGCCGCTACCCCCATAGACCCTGTTGT
TCATATCTGACTAAGTCTCACCGTCTCAGCCTCTTAGTCACACCTTGATAATCTGATAATAGGGG
CGACATATACCCCCGTAGATCTCGCCCGCCACCGGCCCCACGCCAAAACCAAGCACACCGCCAGC
ACCACCAGCACCCACGCTACCCGCTGCCACCCTCACCAGCCCGCTACCGCCGCTGCCCACCCCCG
CCGTCCTCCACCGAACCGCCACTCCCGACCTGCACACGCCCGAGTCGAAAAAAAAGCAAGTTGGG
CAACACTGTCACCGGAGCCTACCCCTTGCCACGCCCGAACCCGACCCCCAGGCGCACAGACTCCG
TAGTGCGCACCCGCCTGTTGATTGTCATACCATGTCGCGCCAAGT
Found at i:52650 original size:25 final size:26
Alignment explanation
Indices: 52622--52681 Score: 65
Period size: 24 Copynumber: 2.4 Consensus size: 26
52612 AGCCCTGCCG
52622 CGTCCGCCGCC-CCAG-CCGCAGGCCC
1 CGTCCGCCGCCACCAGCCCGCA-GCCC
*
52647 CGT-CGCC-CCAGCAGCCCGCAGCCC
1 CGTCCGCCGCCACCAGCCCGCAGCCC
*
52671 CGCCCGCCGCC
1 CGTCCGCCGCC
52682 GGCCAGACCC
Statistics
Matches: 29, Mismatches: 2, Indels: 7
0.76 0.05 0.18
Matches are distributed among these distances:
23 2 0.07
24 13 0.45
25 12 0.41
26 2 0.07
ACGTcount: A:0.08, C:0.62, G:0.27, T:0.03
Consensus pattern (26 bp):
CGTCCGCCGCCACCAGCCCGCAGCCC
Left flanking sequence: Indices 52122 -- 52621
CCACGCCCGAACCCGACCCCCAGGCGCACAGACTCCGTAGTGCGCACCCGCCTGTTGATTGTCAT
ACCATGTCGCGCCAAGTGCCCATCTCCGTGAAAGTGGTGGCGGCCGAGTCGTTGTACAAACGCGA
CGTGTTCAAGCAACCCGACCCGTTTGCGGTGATCACCGTGGACGGGGCACAGACGAAAACCACCA
AGACGGCCAAGAAGACGTTGAACCCGTACTGGAACGAGCTGTTCACCCTCAATGCCTCCGACAAC
CTGATCCTCGTCATCCAGGTGTTTGACCAGAAAAAGTTCAAGAAGAAGGACCAAGGCTTCCTCGG
CGTGGTCAACATCCGCATCGGCGATGCCATCGACTTGCTGGTGGCCAACTCCGAGGAGACCATCA
CCAAGGACCTCAAGAAATCCAACGAAAACCTCGCGGTGCTGGGCAAGATCATCGTGGTGATCTCG
CACAAGGGCTCGGCCAACGGCGTGGCCCAGCCGCGAGCCCTGCCG
Right flanking sequence: Indices 52682 -- 53181
GGCCAGACCCGCCAGTTCCTGCTGTTCGAGGACCAGTACGGCCGGCTCCCGCCAGGGTGGGAACG
CCGCACCGACAACTTCGGGCGCACCTACTACGTGGACCACAACCTGCGCACCACCACCTGGCAGC
GGCCCGCGCTCGACGAGCTGGAGCTGGAGCGCGGGATCCAGCGCCAGAACACCACCAACCTCGAG
CGCCAGCAGCACCGCGGCCGCACGCTCCCGGGCGAGCTGCTGCAGCCGCTGACCCCGCTGGCCAC
GCCCAACCCGGGCGCCGTCACCGTCAACGCGCTGGGCGGCAACACCCCGGTGCTGCCCGCGGCCG
CAGTGCTGATGGCCGCGCTGGGCGCCACCACGCTGGGCCTCGGCGAGCTCCCGCTGGGGTGGGAG
CAGCGGTTCACCAACGAGGGCCGCCCGTACTTTGTCGACCACAACACCCGCACCACCACCTGGGT
GGACCCGCGGCGCCAGCAGTACATCCGCACGTTTGGGCCCAACAC
Found at i:56254 original size:21 final size:21
Alignment explanation
Indices: 56215--56254 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
56205 CTTCACAACC
*
56215 TACAACTCGTACTTTACACCT
1 TACAACTCGTACTTGACACCT
* *
56236 TACAACTCTTCCTTGACAC
1 TACAACTCGTACTTGACAC
56255 TCTATGACTC
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.28, C:0.35, G:0.05, T:0.33
Consensus pattern (21 bp):
TACAACTCGTACTTGACACCT
Left flanking sequence: Indices 55715 -- 56214
TTGTCGGAACTGGCCAATACCATCATCTCCGGTCTCGCCACCCACTGTTTCCACTAGCCACTTTC
CCCCTCAAAAGAAACTCAGCCGTGTGGACCGATAGCTTGGCACACGTCATCCAGCAGCTCGCGGC
TGGGACCGGTGGCTAGGTCCGTTGACGCTTGCTCTAAGCAGTGTAAATGATCTACGTCATCGCTA
GTTGAGAGCGCATCGCATTGTTAGACCTTCAACCCTCACGTCTAAACCGGTGGTGTTACGCACGT
CCGATCCAGCATCTGACCGTGTGGACGAGTCTCTCCCGTGGTTGCTAGTGGCGTTATAGGCGAGC
AGTAGCGTGATAAGCTACCAAAAGAAATGTAAGACACCCCAGTGGTGGTTGGCAATAGCGTGTAG
CGTGTACCTGGGGTGGAGTCTAGGCCACCACCGGTCACTCGTTGCTCCACCCCGTCAACAACCAA
ATTTTAGCACCACTCGTTCACATTATTGTCTCTTTCTTCACAACC
Right flanking sequence: Indices 56255 -- 56754
TCTATGACTCTTCCCTGACACTCCTTCACTGCACCGGTCCGGCCCGCTCGTCCGCTCGCGACCAC
TACCGCCCATCTCACCCACGTCTACAGCCGCTCGTCTCTCCTCCACCCTTCGCATCCACCCGGGC
CACAAAAGAAACACTGAGGGGTCGGCCAGTTCACCGATCCCCACCCGCTCCTATCCCCGAGCCCC
CGGTCCACTCGTAAGCCCACCCGTTGGCCCGATCCCGCACCGTTTGCCATTTGTCATCAGTCGAT
TGTAATCACCCGTGTGTCCTTTGTCCGCACCCACACAATGCGTTTGTGTACGCAGCTACGGCTCG
TCCACCGTTGTCGGCTTCGGCCCGAGGATCGACACGACATTGAAGCGGGGAATGTGCACTGTAGG
TGCACCACCCGTGCACCGGCGAGAGTCACCACCGTGCCGACATCCCACGGGCAGCGGCCGCAAAC
CGGCCCAAGAGGTCCGGTGCCGACAGCGGTCAAATATAGCACGAC
Found at i:57047 original size:11 final size:11
Alignment explanation
Indices: 57031--57071 Score: 55
Period size: 11 Copynumber: 3.7 Consensus size: 11
57021 CCCGTTAAGG
*
57031 AGGTGCATCGC
1 AGGTGCAGCGC
*
57042 AGGTGCCGCGC
1 AGGTGCAGCGC
*
57053 AGGTGCCGCGC
1 AGGTGCAGCGC
57064 AGGTGCAG
1 AGGTGCAG
57072 TGTAACGACA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
11 27 1.00
ACGTcount: A:0.15, C:0.29, G:0.44, T:0.12
Consensus pattern (11 bp):
AGGTGCAGCGC
Left flanking sequence: Indices 56531 -- 57030
TCCTTTGTCCGCACCCACACAATGCGTTTGTGTACGCAGCTACGGCTCGTCCACCGTTGTCGGCT
TCGGCCCGAGGATCGACACGACATTGAAGCGGGGAATGTGCACTGTAGGTGCACCACCCGTGCAC
CGGCGAGAGTCACCACCGTGCCGACATCCCACGGGCAGCGGCCGCAAACCGGCCCAAGAGGTCCG
GTGCCGACAGCGGTCAAATATAGCACGACACCGTGCCAAGAACCCATGCAGTCAATGTCTCAGCC
ACCACGAACGGCGTGAGTGCAGTGGTGCCATGCGCACTGTGGCGCCTCTCGGAGAACAGCGCGAT
TTTCCGGATGACACTAGTGCGGCTACGGTGGGTGCAAGAGAAGCAGCGAGTGATGACGGGGTCGC
CTGGAGTTGCTGCGCGGGTATAGCGCGGGTTGCTAGCCCTTCGCTGCCCCTCTGGCGGGGGTGAA
CTCGTCTCGACCATTAGTAAGCAATCTCTTTCGTCCCCGTTAAGG
Right flanking sequence: Indices 57072 -- 57571
TGTAACGACACACATACCGGAACGGGTTCAGGCCGACGGGCGGGCTAGGGCCAATTGGGCGCCTG
TTGGTGCACTTTTGACCAGCTAGGCTTTCTCTTTGGTGCCCCTAGTACCCGTTCCATTGCTTTTC
CCGTCCGTAGCTCCCTTCCTTCCGCCACACCACCGGAGCTGACTCATCGGCAAGATGATGCGGAC
ATAGCATTAATTCCGTTTGCTGTAGTATATAAAGGTAACGGAGAACCGCAAAACAAGTCCGAAAT
TTCATTTAAGCACAGATCATGACACGGGACCTGGATAAGTACCTGTCCCACGACAGCTCTGACGG
CACCGTGCAGGCGTACAACGTATCCACCGATGAGGAGGCCCAGCCGCGCCAGTACCTGCGAGCCA
GCATCTACGGCGGTTTGGACGATGAGGGCATCAGTATCAGACGGGTAGCCACTCGCGAAACAGTG
CTCAGCGACATGAGGCTGCGGATCGAGGCCGTAGCCGACTTGCCC
Found at i:64202 original size:16 final size:16
Alignment explanation
Indices: 64181--64211 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
64171 AGGTTGCGGA
64181 CATCGGGTGTGGAGAG
1 CATCGGGTGTGGAGAG
64197 CATCGGGTGTGGAGA
1 CATCGGGTGTGGAGA
64212 TCGAGTTGAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.19, C:0.13, G:0.48, T:0.19
Consensus pattern (16 bp):
CATCGGGTGTGGAGAG
Left flanking sequence: Indices 63681 -- 64180
GAACAAGATGTAGGCGATGCCATCGCGAGAGAGGAGGGTGTCCAAGTTGTCGAGCACCTGCCACG
TCGTCTCCATGCCGTCGGCGCCCCCGAGCAACGCGAGATCGAGCCACACCGGGTCGTCGTCTGCC
TGGGGTCGCGCCGGAACCTCCTCGGCCGGCACATACGGCGGGTTGAACACGAGTAGATCCACCAC
CCCCGGGCGGAGGCCATCGCCAAGGCTCATCTGCATCATCTCCACCCCGTTGCGGAGGTGGTTCT
CCCGGAACGTAGACACCACCTGCGAGCACGCGTGGGGGTTGATGTCGGTGGCTACCGCGTACCCC
TTCGGGTACAAGTGCTGGGCGACAAAGCTCAGCACCACCCCCGAGCCGGCACCGATCTCGCACAC
CACGGGGAACGCAAACCGCGCCATGAGCTCGGCCCGGTCCTGCTCGAAGCAGTCGAGGAGCAAGA
ACAGGTCCTCCGCGGGCTCGTACACCTGCTCGTGGAGGTTGCGGA
Right flanking sequence: Indices 64212 -- 64711
TCGAGTTGATCGTGCGAAGCCGCACCGAGATAAGGGTCTACAAAGGATGGTATACGACTAGATAA
AAATAGAAGTGGGGTGGTTTGGTGGGTGTGCGGTGGGGTGGGCGGTGGTGTTCGGTGGTGTTTCG
TGGTGTTTGGTGGCGTGGTTTGGTGGTGTGGGCGGTGGCGACGGTGGGTGACGGTGGGTGACGGT
GGGTGACGGTGGGTGGGACGTAGGTGGCTATAAATAGCGTAGCCGACACGTAGATAGCGGGCACG
GAGCGGGGCACGCGCGGGGTGGACTAGCACGGGCCCACACCTGCTCTCAGCAGCCCCTTTCGTCT
TCTCCCGTGGTGTAGTCTCGCCCAGCCCACTACCAGACGTGCGAAATAAACGCGCATCAACGACA
TTCATCACACCATGCAAGTGCACGTCAAGACGTTGACCGGGCGCAACATCCCCGTGGACGTGGAG
CCCACCGACAAGATCATCCGCATCAAGGAGATGATGGAGGAGAAG
Found at i:64396 original size:10 final size:10
Alignment explanation
Indices: 64381--64421 Score: 82
Period size: 10 Copynumber: 4.1 Consensus size: 10
64371 GGGCGGTGGC
64381 GACGGTGGGT
1 GACGGTGGGT
64391 GACGGTGGGT
1 GACGGTGGGT
64401 GACGGTGGGT
1 GACGGTGGGT
64411 GACGGTGGGT
1 GACGGTGGGT
64421 G
1 G
64422 GGACGTAGGT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 31 1.00
ACGTcount: A:0.10, C:0.10, G:0.61, T:0.20
Consensus pattern (10 bp):
GACGGTGGGT
Left flanking sequence: Indices 63881 -- 64380
GGCGGAGGCCATCGCCAAGGCTCATCTGCATCATCTCCACCCCGTTGCGGAGGTGGTTCTCCCGG
AACGTAGACACCACCTGCGAGCACGCGTGGGGGTTGATGTCGGTGGCTACCGCGTACCCCTTCGG
GTACAAGTGCTGGGCGACAAAGCTCAGCACCACCCCCGAGCCGGCACCGATCTCGCACACCACGG
GGAACGCAAACCGCGCCATGAGCTCGGCCCGGTCCTGCTCGAAGCAGTCGAGGAGCAAGAACAGG
TCCTCCGCGGGCTCGTACACCTGCTCGTGGAGGTTGCGGACATCGGGTGTGGAGAGCATCGGGTG
TGGAGATCGAGTTGATCGTGCGAAGCCGCACCGAGATAAGGGTCTACAAAGGATGGTATACGACT
AGATAAAAATAGAAGTGGGGTGGTTTGGTGGGTGTGCGGTGGGGTGGGCGGTGGTGTTCGGTGGT
GTTTCGTGGTGTTTGGTGGCGTGGTTTGGTGGTGTGGGCGGTGGC
Right flanking sequence: Indices 64422 -- 64921
GGACGTAGGTGGCTATAAATAGCGTAGCCGACACGTAGATAGCGGGCACGGAGCGGGGCACGCGC
GGGGTGGACTAGCACGGGCCCACACCTGCTCTCAGCAGCCCCTTTCGTCTTCTCCCGTGGTGTAG
TCTCGCCCAGCCCACTACCAGACGTGCGAAATAAACGCGCATCAACGACATTCATCACACCATGC
AAGTGCACGTCAAGACGTTGACCGGGCGCAACATCCCCGTGGACGTGGAGCCCACCGACAAGATC
ATCCGCATCAAGGAGATGATGGAGGAGAAGGAGGGGATCCACCCGTCGCAGCAGCGGCTCATCTA
CCAGGGGAGCCAGCTCCAGGACGACCTCCTGGTGGCGGAGTGCGGGATCCAGCCGGGATCGAACC
TCCACGTGGTGTTGTCGTTGAGAGGGGGTTACTAGGTAGCTAATACACGAGTTATGATTGGAAGT
GGGGTGGAGGGGGGGTTGGGCTATTGGCTGTGGCTAGTGGTTGTG
Found at i:65052 original size:17 final size:18
Alignment explanation
Indices: 65030--65077 Score: 66
Period size: 17 Copynumber: 2.8 Consensus size: 18
65020 AGCGTGACAG
65030 CGTGAC-AGCGTGAGGAA
1 CGTGACAAGCGTGAGGAA
65047 CGTGACAAGCG-GAGGAA
1 CGTGACAAGCGTGAGGAA
*
65064 C-TGACGAGCGTGAG
1 CGTGACAAGCGTGAG
65078 ACTGACGAGC
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
16 8 0.29
17 16 0.57
18 4 0.14
ACGTcount: A:0.29, C:0.19, G:0.42, T:0.10
Consensus pattern (18 bp):
CGTGACAAGCGTGAGGAA
Left flanking sequence: Indices 64530 -- 65029
TTCGTCTTCTCCCGTGGTGTAGTCTCGCCCAGCCCACTACCAGACGTGCGAAATAAACGCGCATC
AACGACATTCATCACACCATGCAAGTGCACGTCAAGACGTTGACCGGGCGCAACATCCCCGTGGA
CGTGGAGCCCACCGACAAGATCATCCGCATCAAGGAGATGATGGAGGAGAAGGAGGGGATCCACC
CGTCGCAGCAGCGGCTCATCTACCAGGGGAGCCAGCTCCAGGACGACCTCCTGGTGGCGGAGTGC
GGGATCCAGCCGGGATCGAACCTCCACGTGGTGTTGTCGTTGAGAGGGGGTTACTAGGTAGCTAA
TACACGAGTTATGATTGGAAGTGGGGTGGAGGGGGGGTTGGGCTATTGGCTGTGGCTAGTGGTTG
TGGCTGTAGAGGTGGTTGGGTGTGGGTGTGAGCGTTGCAATTGCGGTGGAACGAAGGTAGCGCGA
AGACAGACAAGCTGGAGGGTGTGGAGGGTGTGGTGAGCGTGACAG
Right flanking sequence: Indices 65078 -- 65577
ACTGACGAGCGTGGATTCGTGATACCGCGTGGTTGCGTACTACCGCGTGGGTCTGTGCTGTGGCG
AGTCCACACGCGTTGGAGAGAAATAACGTAGGATGGTGCTGGTTGTTGTGTGGCCAAGTCACACG
CTAACATTCCACATTCACCTTACACATTGGCTCAGGAACGTCCATTGTAGTGTGTATTGTTTGCG
AGTGACATAGCATTACATACCGTAGAAGCTAGGCCAAAGACGATAATACGGCAACAATGACACCG
GAAACCCCACCCGCTTCTCCTCATTGGAGCTACCACCACATTGCTTCGCCCCTTCCACCCAATTG
ACCTTCTTTCCCACCCTCCAGTCTCCTCACTACCTACGCACCATCACCAACCGAAAATATACAAC
CCGTACCACCACCACCACTACACGCACCGACTAAACAATCCCACTAAGCACAACACACCCACTAC
ACTACTCTCACCATACCCCTAAATCTCATCCCCTCCCCATCTTTC
Found at i:68359 original size:18 final size:18
Alignment explanation
Indices: 68336--68370 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
68326 TCCGGGAGAT
68336 GCTCGCGTATATTTAAAC
1 GCTCGCGTATATTTAAAC
*
68354 GCTCGCGTGTATTTAAA
1 GCTCGCGTATATTTAAA
68371 GAGAGGATGC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.26, C:0.20, G:0.20, T:0.34
Consensus pattern (18 bp):
GCTCGCGTATATTTAAAC
Left flanking sequence: Indices 67836 -- 68335
GGGGAGACGGTGGCGATTGGCGAGTACGAGGACGGCGGCATTGGGCCGGGCAACTTTGCCGTGCA
GTTGGACGACGAGCTCGTGGCGGACTTGCACTGGCAGACCATCGACGGGCTGTACCGGGTGGCTC
CCGTGACCGCGCAGTTGGAGGTGCGGAACCCCAAGCGGCTGGCGAGCCACGCGCTCCTGGCCCAC
ACCGAGTTCACCCTCAAGCGGGCGAAGCCGGGCGCAGACGCGGTGGCCCCGGTGCTGGACGACAC
CCCCGTCGGGGCGCCGCGGTTGGCCATTGGCAACATCCGGCTTCCCGAGCTCAAAAAGAAGTTGA
TGAAGCGCAACTTGAACGCGGTGTTCAAGCTGGAGGGGACGCTTGTGGTGAACGACGCGGTGGCG
GTGCGCAAGGTGAGCTACCTGGGCGCGGACTCCGACGACCTGGGGGACATTGTCATCGACGGGCT
CATGGGGGCGTTGTACTACGAGGTGAAGGATTGTATCCGGGAGAT
Right flanking sequence: Indices 68371 -- 68870
GAGAGGATGCGTGGTTGTTGGTGCGTTGGTGGTAGAGTGGGTGGTATGGTGTACGAGTAGAGTTG
GCTCTGAGGTCGTACTGAGTACGAAAGGATAGACGAATACATAATCATAGTCAAAACTGTGCAAA
GAGCAAAAGATAGACGAGTAGATCGTAGTCACCACTGTAGAAGCAACGCAAGACAAACGAATACA
TAATCATAGCCACCTAGATATGAACGAAAGATAGATGAATACGACATCATGATTACCACTATAGA
AATGAACGAAAGGTAGGCGAATACATAATTATAGTCACGATCAAAAAATGGACACAATCTTAGTA
ACCACTGTAGATTTGAACGAAAGATAGACATAATCATGGTGCCCACTGTAGAGTGAACGAAAGGA
AGACGAATACATAATCATAGTCACCACTGTGGAATGAACGAAAGATAGAAATGGACGAATACATA
ATCATAGTCATCAATGTAGAATGAACGAAAGATGGACAAATAGAT
Found at i:68790 original size:46 final size:49
Alignment explanation
Indices: 68723--68857 Score: 161
Period size: 52 Copynumber: 2.8 Consensus size: 49
68713 CGAAAGATAG
* *
68723 ACATAATCATGGTGC-CCACTGTAGAGTGAACGAAAG-G-AA-GACGAAT
1 ACATAATCATAGT-CACCACTGTAGAATGAACGAAAGAGAAAGGACGAAT
*
68769 ACATAATCATAGTCACCACTGTGGAATGAACGAAAGATAGAAATGGACGAAT
1 ACATAATCATAGTCACCACTGTAGAATGAACGAAAG--AGAAA-GGACGAAT
* *
68821 ACATAATCATAGTCATCAATGTAGAATGAACGAAAGA
1 ACATAATCATAGTCACCACTGTAGAATGAACGAAAGA
68858 TGGACAAATA
Statistics
Matches: 76, Mismatches: 6, Indels: 10
0.83 0.07 0.11
Matches are distributed among these distances:
45 1 0.01
46 31 0.41
49 1 0.01
50 3 0.04
52 40 0.53
ACGTcount: A:0.44, C:0.16, G:0.21, T:0.19
Consensus pattern (49 bp):
ACATAATCATAGTCACCACTGTAGAATGAACGAAAGAGAAAGGACGAAT
Left flanking sequence: Indices 68223 -- 68722
GCGGTGCGCAAGGTGAGCTACCTGGGCGCGGACTCCGACGACCTGGGGGACATTGTCATCGACGG
GCTCATGGGGGCGTTGTACTACGAGGTGAAGGATTGTATCCGGGAGATGCTCGCGTATATTTAAA
CGCTCGCGTGTATTTAAAGAGAGGATGCGTGGTTGTTGGTGCGTTGGTGGTAGAGTGGGTGGTAT
GGTGTACGAGTAGAGTTGGCTCTGAGGTCGTACTGAGTACGAAAGGATAGACGAATACATAATCA
TAGTCAAAACTGTGCAAAGAGCAAAAGATAGACGAGTAGATCGTAGTCACCACTGTAGAAGCAAC
GCAAGACAAACGAATACATAATCATAGCCACCTAGATATGAACGAAAGATAGATGAATACGACAT
CATGATTACCACTATAGAAATGAACGAAAGGTAGGCGAATACATAATTATAGTCACGATCAAAAA
ATGGACACAATCTTAGTAACCACTGTAGATTTGAACGAAAGATAG
Right flanking sequence: Indices 68858 -- 69357
TGGACAAATAGATCGTATTCACCACTTTAGAAATGAACGAAAGATTGACATAATCGTAGCCACCT
CTGTAGAAATGAGCGAAAGATGGACCTAATCATAGTAACCACCGTAGAATGAATGAAAGGTAGAC
GAATACAAAATCACAGTCACCACTGTAAAACGAAAGATTTACGAATACATACCCATAGTCACCGC
TGTAATGATGAACGCCAGTCTTAGTGATAGACGATATAAGTCATGTTACACGTGTAGTAACATGA
ACGTCTGGGCTGAACATACGCTATGACACCACGCTACCAGTCGTCACAAAATCTCGCTTCATACC
CTAGACCTGTGCTTTTCGCAACCTGTCAAGTCAAAACCACCACCACATCTACGAACCATGCCACG
GTCAATGCTAAAACAATCGCTAGAACCGACCCCTAGCAGCTTTCTAATCACCCAACCACCCAAAT
CACTCACTGTCCTTCGTCCTCCCCTCGCCTCCTGTACGCGCCGCA
Found at i:68930 original size:41 final size:41
Alignment explanation
Indices: 68821--68981 Score: 137
Period size: 41 Copynumber: 3.9 Consensus size: 41
68811 ATGGACGAAT
* * * *
68821 ACATAATCATAGTCATCAATGTAG-AATGAACGAAAGATGG
1 ACATAATCGTAGCCACCACTGTAGAAATGAACGAAAGATGG
** * *
68861 ACAAATAGATCGTATTCACCACTTTAGAAATGAACGAAAGATTG
1 AC--ATA-ATCGTAGCCACCACTGTAGAAATGAACGAAAGATGG
* *
68905 ACATAATCGTAGCCACCTCTGTAGAAATGAGCGAAAGATGG
1 ACATAATCGTAGCCACCACTGTAGAAATGAACGAAAGATGG
* * ** * *
68946 ACCTAATCATAGTAACCACCGTAG-AATGAATGAAAG
1 ACATAATCGTAGCCACCACTGTAGAAATGAACGAAAG
68982 GTAGACGAAT
Statistics
Matches: 97, Mismatches: 20, Indels: 8
0.78 0.16 0.06
Matches are distributed among these distances:
40 12 0.12
41 48 0.49
42 6 0.06
43 14 0.14
44 17 0.18
ACGTcount: A:0.42, C:0.17, G:0.19, T:0.22
Consensus pattern (41 bp):
ACATAATCGTAGCCACCACTGTAGAAATGAACGAAAGATGG
Left flanking sequence: Indices 68321 -- 68820
TTGTATCCGGGAGATGCTCGCGTATATTTAAACGCTCGCGTGTATTTAAAGAGAGGATGCGTGGT
TGTTGGTGCGTTGGTGGTAGAGTGGGTGGTATGGTGTACGAGTAGAGTTGGCTCTGAGGTCGTAC
TGAGTACGAAAGGATAGACGAATACATAATCATAGTCAAAACTGTGCAAAGAGCAAAAGATAGAC
GAGTAGATCGTAGTCACCACTGTAGAAGCAACGCAAGACAAACGAATACATAATCATAGCCACCT
AGATATGAACGAAAGATAGATGAATACGACATCATGATTACCACTATAGAAATGAACGAAAGGTA
GGCGAATACATAATTATAGTCACGATCAAAAAATGGACACAATCTTAGTAACCACTGTAGATTTG
AACGAAAGATAGACATAATCATGGTGCCCACTGTAGAGTGAACGAAAGGAAGACGAATACATAAT
CATAGTCACCACTGTGGAATGAACGAAAGATAGAAATGGACGAAT
Right flanking sequence: Indices 68982 -- 69481
GTAGACGAATACAAAATCACAGTCACCACTGTAAAACGAAAGATTTACGAATACATACCCATAGT
CACCGCTGTAATGATGAACGCCAGTCTTAGTGATAGACGATATAAGTCATGTTACACGTGTAGTA
ACATGAACGTCTGGGCTGAACATACGCTATGACACCACGCTACCAGTCGTCACAAAATCTCGCTT
CATACCCTAGACCTGTGCTTTTCGCAACCTGTCAAGTCAAAACCACCACCACATCTACGAACCAT
GCCACGGTCAATGCTAAAACAATCGCTAGAACCGACCCCTAGCAGCTTTCTAATCACCCAACCAC
CCAAATCACTCACTGTCCTTCGTCCTCCCCTCGCCTCCTGTACGCGCCGCACGGTTTTTCGCACT
TCAACCAAACGAATTCAACCAATTAAAAAAAACCCTATACTAATATGGAGCCCATTTCGAGATCC
GGCGGCACGAGAAAGTGCTTTTACGAGTTCCAGACGCTTGCGGCG
Found at i:69862 original size:16 final size:16
Alignment explanation
Indices: 69841--69875 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
69831 TAAGGGTAGA
69841 CTCGAGT-AGGTGGAGG
1 CTCGAGTGA-GTGGAGG
69857 CTCGAGTGAGTGGAGG
1 CTCGAGTGAGTGGAGG
69873 CTC
1 CTC
69876 TAGAAAGGTG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 17 0.94
17 1 0.06
ACGTcount: A:0.17, C:0.17, G:0.46, T:0.20
Consensus pattern (16 bp):
CTCGAGTGAGTGGAGG
Left flanking sequence: Indices 69341 -- 69840
CTCCTGTACGCGCCGCACGGTTTTTCGCACTTCAACCAAACGAATTCAACCAATTAAAAAAAACC
CTATACTAATATGGAGCCCATTTCGAGATCCGGCGGCACGAGAAAGTGCTTTTACGAGTTCCAGA
CGCTTGCGGCGTGCTACACCTCGGCGGACACCTCGTCCAAGAAGCAGTGCATCCCCCAGTACGAC
GACTACTACGAGTGTCTCCACGGGACCAAGGAGCGGGCGCAGGTCAAGCTCATGTTGAAGCAATT
GCAGCACAACGAGGCCAACAAGTCGGGTGTCACTGCCGCCGACTTGTACAAAAAGTCTGGCCGTG
TCTACGAAAACCTCGACTTGATCAAGAAGGATTAAGTTACCGTCATGAATGAAAAATCTAATAAA
CGCATAGAATAGTATGGTGTAGGCCGGGAGGCGGGTGTTGAGGGCACAGTGGCAGGTAAGAATGA
TATGGGGGTGCGAGTTGGAGAAGGTTTAGCGGGTCTAAGGGTAGA
Right flanking sequence: Indices 69876 -- 70375
TAGAAAGGTGTTGGGTGAGAAGGTGTTCAGGGTGGAACACCAACAGTCAACATTGGGTCAACTCA
TTGGCGTCACTGATTGACGTATGAACCAAAACCAGAACTAAGTTTCATTCCAGTGAGCTTTTTCA
TCGTCATTGAGTCGACTCTATTTGACTTCCCATACACGCACTACTAAATACAACCAACTAGCCAC
CAGGAAACTACCCCAAACACATCTAACCCAAACACAAGTAATTCAAAATACTACCCAAACCACCA
ATTCTAACCCACCTCCAACCCACACCTCCAACCCACACCACACACCCATTCTCTTCCACCCCTTC
CTTCTCCACCCCACCCTTCACCACCTCTTCGATCTCGCGCGAATCTCATCTGACCCATGGCGACC
GAAACCAGACCCGAGCCCCCGGCCCAGGCTCCGCGGCTCCACGAGGCTGCGGACCTCGAGGAGCT
CCGGCTGTGGCAGCTCGTCAAACGCCGTGACTTTGAGCGGCTGGT
Found at i:70161 original size:13 final size:13
Alignment explanation
Indices: 70145--70174 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
70135 AATTCTAACC
70145 CACCTCCAACCCA
1 CACCTCCAACCCA
70158 CACCTCCAACCCA
1 CACCTCCAACCCA
70171 CACC
1 CACC
70175 ACACACCCAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.30, C:0.63, G:0.00, T:0.07
Consensus pattern (13 bp):
CACCTCCAACCCA
Left flanking sequence: Indices 69645 -- 70144
TGTACAAAAAGTCTGGCCGTGTCTACGAAAACCTCGACTTGATCAAGAAGGATTAAGTTACCGTC
ATGAATGAAAAATCTAATAAACGCATAGAATAGTATGGTGTAGGCCGGGAGGCGGGTGTTGAGGG
CACAGTGGCAGGTAAGAATGATATGGGGGTGCGAGTTGGAGAAGGTTTAGCGGGTCTAAGGGTAG
ACTCGAGTAGGTGGAGGCTCGAGTGAGTGGAGGCTCTAGAAAGGTGTTGGGTGAGAAGGTGTTCA
GGGTGGAACACCAACAGTCAACATTGGGTCAACTCATTGGCGTCACTGATTGACGTATGAACCAA
AACCAGAACTAAGTTTCATTCCAGTGAGCTTTTTCATCGTCATTGAGTCGACTCTATTTGACTTC
CCATACACGCACTACTAAATACAACCAACTAGCCACCAGGAAACTACCCCAAACACATCTAACCC
AAACACAAGTAATTCAAAATACTACCCAAACCACCAATTCTAACC
Right flanking sequence: Indices 70175 -- 70674
ACACACCCATTCTCTTCCACCCCTTCCTTCTCCACCCCACCCTTCACCACCTCTTCGATCTCGCG
CGAATCTCATCTGACCCATGGCGACCGAAACCAGACCCGAGCCCCCGGCCCAGGCTCCGCGGCTC
CACGAGGCTGCGGACCTCGAGGAGCTCCGGCTGTGGCAGCTCGTCAAACGCCGTGACTTTGAGCG
GCTGGTGGGCCGCAATCCCAAGGCTTTCGGCCTGTGGCTCCGCTACGCCCGATGGGAGGCCGAGG
AGAACCACGACTACGCCCGGGCCCGCTCGATCTACGAACGGGCACTCGACGCCGACATCGCCCAC
GTGCCCCTCTGGGTCCACTACATCCGCTTCGAGCTCGCGCTCAAGGCCGTGAACCACGCCCGAAA
CTTGCTCGACCGGGCGGTCACCGTGCTTCCCCACGAGCAGAAGTTGTGGTTCATGTACGTGCAGA
CGGAGGAGATGCTCAAGAACTTCCCCAAAACCCGCCTGGTGTTCG
Found at i:72237 original size:12 final size:12
Alignment explanation
Indices: 72220--72278 Score: 73
Period size: 12 Copynumber: 4.9 Consensus size: 12
72210 AAGAAGAGTG
*
72220 AGAGTGACGAGA
1 AGAGTGAGGAGA
*
72232 AGAGTGAAGAGA
1 AGAGTGAGGAGA
*
72244 AGAGTGGGGAGA
1 AGAGTGAGGAGA
*
72256 AGAGTGGGGAGA
1 AGAGTGAGGAGA
*
72268 AGAGTGGGGAG
1 AGAGTGAGGAG
72279 TGATTGTATT
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 44 1.00
ACGTcount: A:0.37, C:0.02, G:0.53, T:0.08
Consensus pattern (12 bp):
AGAGTGAGGAGA
Left flanking sequence: Indices 71720 -- 72219
GGCGGCGTCCGCGCCCGATGCCCAGGCGCGCCGGTTCGCCGTGGACTGGTTCACCGACGAGTTGT
TGTATCCCGAGGCTCGCGAGGTGTACGAGCGGACGGTGGGGGCGCCCGAGGCGCTGGTGGGCGAC
TGGGTGGCCTATGCGTTGTGGGAGTCTGCCATTCCTACCGACGAGCAGTTGGATGCGTTCAATGC
GTCCGATGCCGACGAGCTCGAGGTGGAGATTACCAACAGCCACCGCGACAAGACCCGTGCGGTGT
TCACGCGGGCTGCCGAGGCGTTTCGGGCCAGTGGTGACGACCAGGCGCACATCGCGCTCCTCCAG
GCGTGGGCGGACTACGAGCAGGTGCACGGGGACGAGGCCAACCAGCGCCGGCTCGCGGCGATGCA
GCCGGTGAAGACCGACGAGGGCTACGAGTTCCCTGAGGTGGCGGCGGTGGTGGCCAAGCCCAATC
TCGCGAAGTTCTTGGCCAACGCGAAGCTCTTTGCGAAGAAGAGTG
Right flanking sequence: Indices 72279 -- 72778
TGATTGTATTAGTATTGGAATTATAGAGTTGCTAGGGTTAAGAATGAGACCAGAGCGTTGTGAGA
TTTTCGTAGGATTTGAGTGAAAGTTGGTGGTATTATAGGGCTCGATCGATTTGCCAAAATTTTGA
AAAATCACGCAAAACTGCGTCTATGTGAGTGAATTCTTACATTTCAACACCCCATAGCCTTATTG
GCGGTATTTAGCATACAAAAAACCAATTCCCATAGTTATGAGACAAAAACAGAATTTGGCTAGCT
TCATTTGTAAATTACTCCCTTTGTATCCAAAATTTCCAAAAATCGTGCGTTTTGGAGGGTTGGCC
GAGTGGTCTAAGGCGACCGACTTAAGATCGGTTGGACGTTTGTCCGCGCGAGTTCGAACCTCGCA
TCCTTCACTATCTATTATTTTTATTAATGACGAACAATTAAACCACTTGTTGACGCGAAGTGGCA
GAGTGATATTTCATAAGCGTGTCCGCTTGCGGCAACCCGGGAAGC
Found at i:72255 original size:24 final size:24
Alignment explanation
Indices: 72228--72278 Score: 84
Period size: 24 Copynumber: 2.1 Consensus size: 24
72218 TGAGAGTGAC
72228 GAGAAGAGTGAAGAGAAGAGTGGG
1 GAGAAGAGTGAAGAGAAGAGTGGG
**
72252 GAGAAGAGTGGGGAGAAGAGTGGG
1 GAGAAGAGTGAAGAGAAGAGTGGG
72276 GAG
1 GAG
72279 TGATTGTATT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.37, C:0.00, G:0.55, T:0.08
Consensus pattern (24 bp):
GAGAAGAGTGAAGAGAAGAGTGGG
Left flanking sequence: Indices 71728 -- 72227
CCGCGCCCGATGCCCAGGCGCGCCGGTTCGCCGTGGACTGGTTCACCGACGAGTTGTTGTATCCC
GAGGCTCGCGAGGTGTACGAGCGGACGGTGGGGGCGCCCGAGGCGCTGGTGGGCGACTGGGTGGC
CTATGCGTTGTGGGAGTCTGCCATTCCTACCGACGAGCAGTTGGATGCGTTCAATGCGTCCGATG
CCGACGAGCTCGAGGTGGAGATTACCAACAGCCACCGCGACAAGACCCGTGCGGTGTTCACGCGG
GCTGCCGAGGCGTTTCGGGCCAGTGGTGACGACCAGGCGCACATCGCGCTCCTCCAGGCGTGGGC
GGACTACGAGCAGGTGCACGGGGACGAGGCCAACCAGCGCCGGCTCGCGGCGATGCAGCCGGTGA
AGACCGACGAGGGCTACGAGTTCCCTGAGGTGGCGGCGGTGGTGGCCAAGCCCAATCTCGCGAAG
TTCTTGGCCAACGCGAAGCTCTTTGCGAAGAAGAGTGAGAGTGAC
Right flanking sequence: Indices 72279 -- 72778
TGATTGTATTAGTATTGGAATTATAGAGTTGCTAGGGTTAAGAATGAGACCAGAGCGTTGTGAGA
TTTTCGTAGGATTTGAGTGAAAGTTGGTGGTATTATAGGGCTCGATCGATTTGCCAAAATTTTGA
AAAATCACGCAAAACTGCGTCTATGTGAGTGAATTCTTACATTTCAACACCCCATAGCCTTATTG
GCGGTATTTAGCATACAAAAAACCAATTCCCATAGTTATGAGACAAAAACAGAATTTGGCTAGCT
TCATTTGTAAATTACTCCCTTTGTATCCAAAATTTCCAAAAATCGTGCGTTTTGGAGGGTTGGCC
GAGTGGTCTAAGGCGACCGACTTAAGATCGGTTGGACGTTTGTCCGCGCGAGTTCGAACCTCGCA
TCCTTCACTATCTATTATTTTTATTAATGACGAACAATTAAACCACTTGTTGACGCGAAGTGGCA
GAGTGATATTTCATAAGCGTGTCCGCTTGCGGCAACCCGGGAAGC
Found at i:76477 original size:21 final size:21
Alignment explanation
Indices: 76451--76504 Score: 81
Period size: 21 Copynumber: 2.6 Consensus size: 21
76441 CGCCTTGCGC
*
76451 TCGTAGCTGGGCCGGTTCTGG
1 TCGTAGCCGGGCCGGTTCTGG
*
76472 TCGTAGCCGGGCCGGTTTTGG
1 TCGTAGCCGGGCCGGTTCTGG
*
76493 TCGTACCCGGGC
1 TCGTAGCCGGGC
76505 TGGAACGGCT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.06, C:0.28, G:0.41, T:0.26
Consensus pattern (21 bp):
TCGTAGCCGGGCCGGTTCTGG
Left flanking sequence: Indices 75951 -- 76450
CCTTGAACTCGTACAAGTGCAGGTTGGGTGCGTCGCACTCGACCCAGAACCGGGTGTTGCCGAGG
TCGGTGGGCCGTTTGATGACGCTGGTGCCTCCGCACGCCACCAGCTGGCGCGGCTTCAAGTTGGT
TTCGCCGTCCAAGTTTTTCGTTTCCACCAGACAGCCCCCCTCGGGGTCCGACAGCGACAACAAAA
TGAGGTCCGCGGGCATCTCCTCGTTGGCGCGGATCCGCACAAACGAGCCCACCTCGATGTCCTTC
CACCGCCGGTTCTTGAACTTCAGCACGTTGCCCGCGTCCCCGTTGTCCCGCACCAACTCGGGCAG
GATGATGGTGTGGGGCACGATCTGGGTCGGGTGGAGCCGCAGGGCTGCCAGCTGGAGCAGCCGCC
GCGGGCTGTAGACGCTGTGGCGCGGCAGAAGCACGCTCCCGCGGTTGGCGGGCTGGTTGAGTGCG
TCGGTGGCCGTCTCGTAGTGGGGAAGCGGTGACGACGCCTTGCGC
Right flanking sequence: Indices 76505 -- 77004
TGGAACGGCTGGCCTGGCTGGCTAGCTGGTCCGTCCTTGCGCTCGTAGCTCGCGCGTGGGCTCAC
CCGCGACTCCACCGTGCTCACCCGCCGGAGGGCCAAGTCGTGGTCGGCCACCTCCTGGTCGCGCA
ACTTTTGTTTTGCGGCCTTCGTAAAGAACACAGCGATGAACGCACGCTTGATCCCGCGCCACAAA
CCCGCAAACACGCTCCCTAGCGCCAGATTGAACTTCTGGAGCGCGGTGGGCGGGAGGTGGACCAC
GTTGGCGTTTTCAAGCCCCACCACGAGGTGCACGGGCGAGTTGTTGAGCTCGGAGTCCAGCAGGG
CCCGGCGGTAGTCCTCGAAGGCGTCCTTGGCCGCGGTGATACACACAATGACAATAAGCGGCACT
GCTGCCAACCCAGGCAGGTCGACGCCGAAAATGGTGAAGGCACCCAAGATAATCAACACAAGGAA
GTAGAAGTTGGCCACGTTGGTGAACTGGAGCACGATGTTCTTGGG
Found at i:78213 original size:9 final size:9
Alignment explanation
Indices: 78201--78233 Score: 57
Period size: 9 Copynumber: 3.7 Consensus size: 9
78191 CTATTTGGTT
78201 AATTTGGAC
1 AATTTGGAC
78210 AATTTGGAC
1 AATTTGGAC
*
78219 GATTTGGAC
1 AATTTGGAC
78228 AATTTG
1 AATTTG
78234 AGACTTTATC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
9 22 1.00
ACGTcount: A:0.30, C:0.09, G:0.24, T:0.36
Consensus pattern (9 bp):
AATTTGGAC
Left flanking sequence: Indices 77701 -- 78200
GGTGTTGAGAGGTGTAGAGGGCGGGTGTGTTTCAGGGGTGCTTTTTTGGCGCGGTTGGTGGGTTT
CAACGGGAGCCTGAAACGGGTGACCGCGACAATGTCGTCTGTGCCTGGAAATGCGTAAGCGATGC
TCGACACAAAGTGTAAACACGTTTGTAATGTTAGTAACGGGGGCTTGGCGGTGACTAAGCGCCCA
GGTGTCCCGGAAGGGAAGGCGACCGAGCGCGGGTGTGGGGTGGGCGCAGCGTCCGCGACCAGCGT
GGCTAGGGCCATTGTAGTAAGCGCGCATGTGGCCTAGGCGGGCACGCGATGCAGATGGCCCTAGC
CACCCTGGTCGCGGGCGGTGCTGGTGGGTTGACTAAGCGCGTAATGGGGGTATATATGCGGTTTG
GTGTGGTGTAGACGGTACTGCTTTGGGTGGCTCTGACAGTTCAGAACAGGTCACAGAGTGAGTTA
CGAGCTACAGGTTACGAGTCATAGACCGGTTAAGCCTATTTGGTT
Right flanking sequence: Indices 78234 -- 78733
AGACTTTATCGGGCCGTTTCGGTAAAACACTTCCAAGCTAGACGCTACAGCATTTCGGAACAACT
CCGGAGTTGAGACATTTTCGGATCAACAGGTCATCGCAAGGCCGACCACGGCATACGCCAGACAT
ACACTCAGACATACACCCAGATATACGCTCAGTCCGTAAGAGCCCCACCAACTACACGCCACCAT
CAACCTCGACCACTTCACCATGTTTTTTCTTGTTTCCTACGTGGGCAAGACCATGTTTGATCTGC
TGGTTAGCCACCGCCAGGCGGACAACCAGAAGGTCGAACATCAATCGTCTCTCTTGCTAAACCCA
GCTTGTCAGACAGCCACTTGCGCCCACCCCAAAGCGTTTCTCCCGAAGAAGCATACGCAATGGGG
TAAAGATCATCGCTCCGAACTAGGCCGTCTTGCGACAGCCCGTGGTGTTCGGCAAATTTGAGATG
GCCAGGCTGCTAGGAGCACATGGTCAAGCAAAAACGTTCTCACTT
Found at i:78374 original size:12 final size:12
Alignment explanation
Indices: 78357--78395 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
78347 CGGCATACGC
78357 CAGACATACACT
1 CAGACATACACT
*
78369 CAGACATACACC
1 CAGACATACACT
* *
78381 CAGATATACGCT
1 CAGACATACACT
78393 CAG
1 CAG
78396 TCCGTAAGAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.38, C:0.33, G:0.13, T:0.15
Consensus pattern (12 bp):
CAGACATACACT
Left flanking sequence: Indices 77857 -- 78356
AATGTTAGTAACGGGGGCTTGGCGGTGACTAAGCGCCCAGGTGTCCCGGAAGGGAAGGCGACCGA
GCGCGGGTGTGGGGTGGGCGCAGCGTCCGCGACCAGCGTGGCTAGGGCCATTGTAGTAAGCGCGC
ATGTGGCCTAGGCGGGCACGCGATGCAGATGGCCCTAGCCACCCTGGTCGCGGGCGGTGCTGGTG
GGTTGACTAAGCGCGTAATGGGGGTATATATGCGGTTTGGTGTGGTGTAGACGGTACTGCTTTGG
GTGGCTCTGACAGTTCAGAACAGGTCACAGAGTGAGTTACGAGCTACAGGTTACGAGTCATAGAC
CGGTTAAGCCTATTTGGTTAATTTGGACAATTTGGACGATTTGGACAATTTGAGACTTTATCGGG
CCGTTTCGGTAAAACACTTCCAAGCTAGACGCTACAGCATTTCGGAACAACTCCGGAGTTGAGAC
ATTTTCGGATCAACAGGTCATCGCAAGGCCGACCACGGCATACGC
Right flanking sequence: Indices 78396 -- 78895
TCCGTAAGAGCCCCACCAACTACACGCCACCATCAACCTCGACCACTTCACCATGTTTTTTCTTG
TTTCCTACGTGGGCAAGACCATGTTTGATCTGCTGGTTAGCCACCGCCAGGCGGACAACCAGAAG
GTCGAACATCAATCGTCTCTCTTGCTAAACCCAGCTTGTCAGACAGCCACTTGCGCCCACCCCAA
AGCGTTTCTCCCGAAGAAGCATACGCAATGGGGTAAAGATCATCGCTCCGAACTAGGCCGTCTTG
CGACAGCCCGTGGTGTTCGGCAAATTTGAGATGGCCAGGCTGCTAGGAGCACATGGTCAAGCAAA
AACGTTCTCACTTTGAGGGCACAAGGGTATCTATCTCATCAACCAAGTTGGGTTCAGTGGCTCTT
TTATAGAGTCAAAGAGAGATATTCACTATAGAAAATGATCCCATAGAGTATATCGACAAAGAAAA
AAAAACTAGAATTGGCAAATTCGCCCCTCTTTTATACTCGCACCT
Found at i:83990 original size:12 final size:12
Alignment explanation
Indices: 83973--83999 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
83963 GACGGGGCGG
83973 TGGAATGGAGGC
1 TGGAATGGAGGC
83985 TGGAATGGAGGC
1 TGGAATGGAGGC
83997 TGG
1 TGG
84000 GATAGAGGTC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.22, C:0.07, G:0.52, T:0.19
Consensus pattern (12 bp):
TGGAATGGAGGC
Left flanking sequence: Indices 83473 -- 83972
GACGACACAGCTGAGGTGAGATCTTCCACCGTGTGGACACCCCCAGCCCGCCGGGTCCACTCGGT
GGACGGCTGCTTGTACCGTAGACGGTACCGTTGTAGCAGGCCCGCGTAGATGTCGTCCCACAACT
CGTGGTTGGGGCGAGTGAGATCCAATGAGGTGTTGGCCGGGTCGTAGTAGCCGGGCTTCTTCCAC
AGAGTAACCTCTCCGAGGATCTCCTTGACGAGAGCGACCTTCAGGGCCCCATTTTTAGCAGAGGG
TTGGGGGGAAGGCGTGGGTTTCTTGGGCGTGGGAAGAGGCCCGATGTCAAGCCGTTTGGCCAGAC
GGCGGAGTTCAGGCGGAAGGAACGAGGTTTTCAGCGACTTTAGCCGCACCAGGATCCGTAACATG
GTTCTCTGGAGACGTGCTGGTGGTCTGGTGCATACGATGCCTGGTTATGAACCGTCGCGCTACCG
GAGGGAGCAGAAGGGGAAGGGAGCAGACGACGGGAGACGGGGCGG
Right flanking sequence: Indices 84000 -- 84499
GATAGAGGTCCGATGGTATGACTAAGCTTGTAGTTGAGATGGCCCGAGAATTGAGTGTGGTCGAA
TGATGTGGTGGGTACCATTGCCACGTCCAAAGGGTAGCATTGAGGTTGAACACAGTTGGCAAGCC
TCTAGATTAACCTCACTGTTCACAAGCCTCGAGGTTGATCGCCTATGACTTGGTGGTAACAATGT
ATAAGCCGAAGACACCTTTCGACAATTTGTCACTCCCTCAAATATCCTCCTTATCAGATGTACCA
CGTTGGCTCCCGTGGTATTTACGAATATCGCTGTCTCCTCAGATTTACTTCAACAAACCCAAGTG
ATCACTGGCTCACCGATGACCCACCAGCAAAAACAATACACCTACGTGCCCTTGCAACGCCTATC
GTCTTCCCCGTCCTCTCGGCTCACCATGCATACCATGCGGTGTTACGCATGTACCCCTACCAATA
AAGTTAGACTAGCCGACGGCTAGACACCGCTACCCCGGTTTTCAC
Found at i:88173 original size:10 final size:10
Alignment explanation
Indices: 88158--88205 Score: 60
Period size: 10 Copynumber: 4.8 Consensus size: 10
88148 CGTGGCTGCT
*
88158 TTGGTGTCTG
1 TTGGTGACTG
88168 TTGGTGACTG
1 TTGGTGACTG
* *
88178 CTGGTGGCTG
1 TTGGTGACTG
*
88188 TTTGTGACTG
1 TTGGTGACTG
88198 TTGGTGAC
1 TTGGTGAC
88206 CGTTTGTAAC
Statistics
Matches: 31, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
10 31 1.00
ACGTcount: A:0.06, C:0.12, G:0.40, T:0.42
Consensus pattern (10 bp):
TTGGTGACTG
Left flanking sequence: Indices 87658 -- 88157
TGATCGCCCGATCGCTGGTAATTTGCGCTGGCACCGGGCCTGGTAGTCTGGAAAAAGAAACGACA
GAGAACAAAACTAGCCGCCGGACATGTTCGGTGGTGGTGGTTACCGGTTGCGGATGGGTTTACGA
CGGGTGTCGCAAGCGTGACCGACAATTACAAACCCGGCCTTGCAAACCCTGTGCAAACGCCGAGC
ATCGGGTGACGTGGCCGATGCTGGCAAAAGTCGTGCTAGTTTGACAATAGCCGATATGTACGACG
CTAAGCCATCCCTGATTGTTCGTCGCGGGGTTGCAAACGACATTTGTAGGTGGTTACGTGAGTGA
AAAGTGGGCTCATGCGTGGGTACGAATCGGGTAATGATCGAGCACGAGTCATTCAGCGCAAATTG
ATGGCCCAATTGGTGATTGCTGCGGGTCAGGTTGGCTGTGAAGGTGTTAGCAGTCGGTTACTGTC
GGTGGTGCGGAGTGCTGGTAGTGTATAGTGCGCTTCGTGGCTGCT
Right flanking sequence: Indices 88206 -- 88705
CGTTTGTAACCATTGGTAACTGTTTTGGTAACGAATTGATGGCTGGTTCGACAATTTGGGCCAGA
TTAGATTATTCTGGTTGGACTCGTGTGGACTGGCTATTGTTCCCATCACAACCCGTAGACGACAA
ATGGTTCGAGGTACTTCAAATTGCTCATCTAAACTAATGGGTACACAGTGTTTCCCACCTCACTC
TCTTCCCGCCACACTTCGTATTTCACGATCTACGCATCGTGCCAGGGGTGCACAACCGTTGGGTT
CTATTTTCTCGATCTACCCCTGTAATCTCCGCTAGCCTGCTGGTCGCTGCCACGGCATCTACACC
CGGTCTCGTGTTTCATCATTTATTGCGTTACATTACTGCTGGGCCGAGCCGTACCCACGGATGTC
CTTGGCAAACCGCCACAGCTGGCCCTCCACCTTCACCTTTTTGTCGTGCACCAACCCCAGCGGTT
TGATGGTCACCACCAGATACAGGTCCATCGAGCGGGCATCGCGGT
Found at i:88210 original size:20 final size:20
Alignment explanation
Indices: 88171--88212 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
88161 GTGTCTGTTG
* *
88171 GTGACTGCTGGTGGCTGTTT
1 GTGACTGCTGGTGACCGTTT
*
88191 GTGACTGTTGGTGACCGTTT
1 GTGACTGCTGGTGACCGTTT
88211 GT
1 GT
88213 AACCATTGGT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.07, C:0.14, G:0.38, T:0.40
Consensus pattern (20 bp):
GTGACTGCTGGTGACCGTTT
Left flanking sequence: Indices 87671 -- 88170
GCTGGTAATTTGCGCTGGCACCGGGCCTGGTAGTCTGGAAAAAGAAACGACAGAGAACAAAACTA
GCCGCCGGACATGTTCGGTGGTGGTGGTTACCGGTTGCGGATGGGTTTACGACGGGTGTCGCAAG
CGTGACCGACAATTACAAACCCGGCCTTGCAAACCCTGTGCAAACGCCGAGCATCGGGTGACGTG
GCCGATGCTGGCAAAAGTCGTGCTAGTTTGACAATAGCCGATATGTACGACGCTAAGCCATCCCT
GATTGTTCGTCGCGGGGTTGCAAACGACATTTGTAGGTGGTTACGTGAGTGAAAAGTGGGCTCAT
GCGTGGGTACGAATCGGGTAATGATCGAGCACGAGTCATTCAGCGCAAATTGATGGCCCAATTGG
TGATTGCTGCGGGTCAGGTTGGCTGTGAAGGTGTTAGCAGTCGGTTACTGTCGGTGGTGCGGAGT
GCTGGTAGTGTATAGTGCGCTTCGTGGCTGCTTTGGTGTCTGTTG
Right flanking sequence: Indices 88213 -- 88712
AACCATTGGTAACTGTTTTGGTAACGAATTGATGGCTGGTTCGACAATTTGGGCCAGATTAGATT
ATTCTGGTTGGACTCGTGTGGACTGGCTATTGTTCCCATCACAACCCGTAGACGACAAATGGTTC
GAGGTACTTCAAATTGCTCATCTAAACTAATGGGTACACAGTGTTTCCCACCTCACTCTCTTCCC
GCCACACTTCGTATTTCACGATCTACGCATCGTGCCAGGGGTGCACAACCGTTGGGTTCTATTTT
CTCGATCTACCCCTGTAATCTCCGCTAGCCTGCTGGTCGCTGCCACGGCATCTACACCCGGTCTC
GTGTTTCATCATTTATTGCGTTACATTACTGCTGGGCCGAGCCGTACCCACGGATGTCCTTGGCA
AACCGCCACAGCTGGCCCTCCACCTTCACCTTTTTGTCGTGCACCAACCCCAGCGGTTTGATGGT
CACCACCAGATACAGGTCCATCGAGCGGGCATCGCGGTAGAAGAG
Found at i:91863 original size:33 final size:33
Alignment explanation
Indices: 91821--91899 Score: 113
Period size: 33 Copynumber: 2.4 Consensus size: 33
91811 AGAGCCAGAG
91821 CCAGAGCCGGAAGCCTTGGAGTCGTCACCGTCA
1 CCAGAGCCGGAAGCCTTGGAGTCGTCACCGTCA
** *
91854 CCAGAGCCGGACTCCTTGGAGTCGTCGCCGTCA
1 CCAGAGCCGGAAGCCTTGGAGTCGTCACCGTCA
* *
91887 CCGGAACCGGAAG
1 CCAGAGCCGGAAG
91900 AGCCAGCACC
Statistics
Matches: 39, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
33 39 1.00
ACGTcount: A:0.20, C:0.34, G:0.32, T:0.14
Consensus pattern (33 bp):
CCAGAGCCGGAAGCCTTGGAGTCGTCACCGTCA
Left flanking sequence: Indices 91321 -- 91820
ACTACGAGAGGTGCAGTGCTCCTAATCTCGTGTAATCGTAAAACTCTTGATTGCATAATTGACGT
GTTGGGAGCACTTCAATTCTGTTTTCGATTTCACCCACCTGTGGCAAAGAAACATTCACTGCTTA
GATTTATGCCCATTGCAGGCGTTCCATTGCATTGGCAACTATCTGGGCCCTTATTTTTATCGTCG
CACTGAGTAGCAACCATCGGTGTGAAATATTATTTAGCCGCGAATGCTGCAGCGAAGGCGTCAAC
GAAAATTCCCACGGTAAGCGAACAATCGCCAGTAATTAACTCAAATCATTATTAGATATTACATT
ATAAACGTCTACAGCGTAATTTTAGCACTCTTAGATGAGGAGACCGCCAAGAACGGCAACACCAG
CGAAGAGACCGGAGTAAGCAAGCGAGTTAGAGCCGGAGTCAGAAGACTTAGACTTGTCGTCACCG
TCACCCTTGTCGCCAGACTCCTTGGAGTCGGAGCCAGAGCCAGAG
Right flanking sequence: Indices 91900 -- 92399
AGCCAGCACCACCGGCACCGTCCTCACCGTCGTTGTCGCCGGTAGAAGAGGCGTCAGAGCCGTCA
CCGGACTCGGTGGCAGAGCCAGAGGCGTCGGAACGGTCACCAGACTCGGTGGCAGAACCAGAGGC
GTCAGAGCCGTCACCGGACTCAGTGGCAGAGGCAGAGGCGTCGGAACCGTCACCAGACTCGGTGG
CAGAACCAGAGGCGTCAGAGCCGTCACCGGACTCAGTGGCAGAGCCAGAGGCGTCGGAACCGTCG
CCAGACTCGGTGGCGGAGGCAGAAGCGTCACCAGCAGAGCCAGAGGCGTTGTCACCGTCCTCACC
GTCGTTGTTGTTGTCGTCACCGTCGTTGTCACCAGAGCCGGCGGCACCGCCAACAGCACCGCCGT
TGTTGTCACCGTCGTTGTCGTTGTCACCAGTGGAAGAGGCACCGGTCTCGGAGGCGTCGTCGCCG
TCACCGCCAGTAGCGGTGGCAGAAACGGAAGCGACGTCAGAGGAG
Found at i:91989 original size:39 final size:39
Alignment explanation
Indices: 91946--92189 Score: 317
Period size: 39 Copynumber: 6.3 Consensus size: 39
91936 CGCCGGTAGA
* *
91946 AGAGGCGTCAGAGCCGTCACCGGACTCGGTGGCAGAGCC
1 AGAGGCGTCAGAACCGTCACCAGACTCGGTGGCAGAGCC
* * *
91985 AGAGGCGTCGGAACGGTCACCAGACTCGGTGGCAGAACC
1 AGAGGCGTCAGAACCGTCACCAGACTCGGTGGCAGAGCC
* * * *
92024 AGAGGCGTCAGAGCCGTCACCGGACTCAGTGGCAGAGGC
1 AGAGGCGTCAGAACCGTCACCAGACTCGGTGGCAGAGCC
* *
92063 AGAGGCGTCGGAACCGTCACCAGACTCGGTGGCAGAACC
1 AGAGGCGTCAGAACCGTCACCAGACTCGGTGGCAGAGCC
* * *
92102 AGAGGCGTCAGAGCCGTCACCGGACTCAGTGGCAGAGCC
1 AGAGGCGTCAGAACCGTCACCAGACTCGGTGGCAGAGCC
* * * *
92141 AGAGGCGTCGGAACCGTCGCCAGACTCGGTGGCGGAGGC
1 AGAGGCGTCAGAACCGTCACCAGACTCGGTGGCAGAGCC
*
92180 AGAAGCGTCA
1 AGAGGCGTCA
92190 CCAGCAGAGC
Statistics
Matches: 173, Mismatches: 32, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
39 173 1.00
ACGTcount: A:0.23, C:0.29, G:0.37, T:0.10
Consensus pattern (39 bp):
AGAGGCGTCAGAACCGTCACCAGACTCGGTGGCAGAGCC
Left flanking sequence: Indices 91446 -- 91945
GCTTAGATTTATGCCCATTGCAGGCGTTCCATTGCATTGGCAACTATCTGGGCCCTTATTTTTAT
CGTCGCACTGAGTAGCAACCATCGGTGTGAAATATTATTTAGCCGCGAATGCTGCAGCGAAGGCG
TCAACGAAAATTCCCACGGTAAGCGAACAATCGCCAGTAATTAACTCAAATCATTATTAGATATT
ACATTATAAACGTCTACAGCGTAATTTTAGCACTCTTAGATGAGGAGACCGCCAAGAACGGCAAC
ACCAGCGAAGAGACCGGAGTAAGCAAGCGAGTTAGAGCCGGAGTCAGAAGACTTAGACTTGTCGT
CACCGTCACCCTTGTCGCCAGACTCCTTGGAGTCGGAGCCAGAGCCAGAGCCAGAGCCGGAAGCC
TTGGAGTCGTCACCGTCACCAGAGCCGGACTCCTTGGAGTCGTCGCCGTCACCGGAACCGGAAGA
GCCAGCACCACCGGCACCGTCCTCACCGTCGTTGTCGCCGGTAGA
Right flanking sequence: Indices 92190 -- 92689
CCAGCAGAGCCAGAGGCGTTGTCACCGTCCTCACCGTCGTTGTTGTTGTCGTCACCGTCGTTGTC
ACCAGAGCCGGCGGCACCGCCAACAGCACCGCCGTTGTTGTCACCGTCGTTGTCGTTGTCACCAG
TGGAAGAGGCACCGGTCTCGGAGGCGTCGTCGCCGTCACCGCCAGTAGCGGTGGCAGAAACGGAA
GCGACGTCAGAGGAGGCGTCGGAGCCGTCACCAGAGCCAGAGCCAGAGTCGTCACCGTCACCACC
GCCGATGGTGTTACCGTTCTGACCGTCCTGGTTTCTCAAGGGAATGGAACCAGAGTAGGCAGAGT
ACAATCTCGAGTAGGCAGTAATGTAGGCGGAGACGTCAGAGTAACCTCTGGGGATCGAAGCAGTG
TTCTCCTGGAGGAAAGACAACATCTGTTCGGGGTTACGGGTCTCAAAGTCGCCGTCAGCGGCGAG
GGCAACAGCAGCAAGAGCGAGCAATTGGTACTTCATTATGGGTAT
Found at i:92189 original size:78 final size:78
Alignment explanation
Indices: 91946--92173 Score: 420
Period size: 78 Copynumber: 2.9 Consensus size: 78
91936 CGCCGGTAGA
* *
91946 AGAGGCGTCAGAGCCGTCACCGGACTCGGTGGCAGAGCCAGAGGCGTCGGAACGGTCACCAGACT
1 AGAGGCGTCAGAGCCGTCACCGGACTCAGTGGCAGAGCCAGAGGCGTCGGAACCGTCACCAGACT
92011 CGGTGGCAGAACC
66 CGGTGGCAGAACC
*
92024 AGAGGCGTCAGAGCCGTCACCGGACTCAGTGGCAGAGGCAGAGGCGTCGGAACCGTCACCAGACT
1 AGAGGCGTCAGAGCCGTCACCGGACTCAGTGGCAGAGCCAGAGGCGTCGGAACCGTCACCAGACT
92089 CGGTGGCAGAACC
66 CGGTGGCAGAACC
*
92102 AGAGGCGTCAGAGCCGTCACCGGACTCAGTGGCAGAGCCAGAGGCGTCGGAACCGTCGCCAGACT
1 AGAGGCGTCAGAGCCGTCACCGGACTCAGTGGCAGAGCCAGAGGCGTCGGAACCGTCACCAGACT
92167 CGGTGGC
66 CGGTGGC
92174 GGAGGCAGAA
Statistics
Matches: 145, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
78 145 1.00
ACGTcount: A:0.23, C:0.30, G:0.37, T:0.11
Consensus pattern (78 bp):
AGAGGCGTCAGAGCCGTCACCGGACTCAGTGGCAGAGCCAGAGGCGTCGGAACCGTCACCAGACT
CGGTGGCAGAACC
Left flanking sequence: Indices 91446 -- 91945
GCTTAGATTTATGCCCATTGCAGGCGTTCCATTGCATTGGCAACTATCTGGGCCCTTATTTTTAT
CGTCGCACTGAGTAGCAACCATCGGTGTGAAATATTATTTAGCCGCGAATGCTGCAGCGAAGGCG
TCAACGAAAATTCCCACGGTAAGCGAACAATCGCCAGTAATTAACTCAAATCATTATTAGATATT
ACATTATAAACGTCTACAGCGTAATTTTAGCACTCTTAGATGAGGAGACCGCCAAGAACGGCAAC
ACCAGCGAAGAGACCGGAGTAAGCAAGCGAGTTAGAGCCGGAGTCAGAAGACTTAGACTTGTCGT
CACCGTCACCCTTGTCGCCAGACTCCTTGGAGTCGGAGCCAGAGCCAGAGCCAGAGCCGGAAGCC
TTGGAGTCGTCACCGTCACCAGAGCCGGACTCCTTGGAGTCGTCGCCGTCACCGGAACCGGAAGA
GCCAGCACCACCGGCACCGTCCTCACCGTCGTTGTCGCCGGTAGA
Right flanking sequence: Indices 92174 -- 92673
GGAGGCAGAAGCGTCACCAGCAGAGCCAGAGGCGTTGTCACCGTCCTCACCGTCGTTGTTGTTGT
CGTCACCGTCGTTGTCACCAGAGCCGGCGGCACCGCCAACAGCACCGCCGTTGTTGTCACCGTCG
TTGTCGTTGTCACCAGTGGAAGAGGCACCGGTCTCGGAGGCGTCGTCGCCGTCACCGCCAGTAGC
GGTGGCAGAAACGGAAGCGACGTCAGAGGAGGCGTCGGAGCCGTCACCAGAGCCAGAGCCAGAGT
CGTCACCGTCACCACCGCCGATGGTGTTACCGTTCTGACCGTCCTGGTTTCTCAAGGGAATGGAA
CCAGAGTAGGCAGAGTACAATCTCGAGTAGGCAGTAATGTAGGCGGAGACGTCAGAGTAACCTCT
GGGGATCGAAGCAGTGTTCTCCTGGAGGAAAGACAACATCTGTTCGGGGTTACGGGTCTCAAAGT
CGCCGTCAGCGGCGAGGGCAACAGCAGCAAGAGCGAGCAATTGGT
Found at i:92232 original size:21 final size:21
Alignment explanation
Indices: 92206--92257 Score: 59
Period size: 21 Copynumber: 2.5 Consensus size: 21
92196 GAGCCAGAGG
92206 CGTTGTCACCGTCCTCACCGT
1 CGTTGTCACCGTCCTCACCGT
**** *
92227 CGTTGTTGTTGTCGTCACCGT
1 CGTTGTCACCGTCCTCACCGT
92248 CGTTGTCACC
1 CGTTGTCACC
92258 AGAGCCGGCG
Statistics
Matches: 22, Mismatches: 9, Indels: 0
0.71 0.29 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.08, C:0.35, G:0.23, T:0.35
Consensus pattern (21 bp):
CGTTGTCACCGTCCTCACCGT
Left flanking sequence: Indices 91706 -- 92205
ACCAGCGAAGAGACCGGAGTAAGCAAGCGAGTTAGAGCCGGAGTCAGAAGACTTAGACTTGTCGT
CACCGTCACCCTTGTCGCCAGACTCCTTGGAGTCGGAGCCAGAGCCAGAGCCAGAGCCGGAAGCC
TTGGAGTCGTCACCGTCACCAGAGCCGGACTCCTTGGAGTCGTCGCCGTCACCGGAACCGGAAGA
GCCAGCACCACCGGCACCGTCCTCACCGTCGTTGTCGCCGGTAGAAGAGGCGTCAGAGCCGTCAC
CGGACTCGGTGGCAGAGCCAGAGGCGTCGGAACGGTCACCAGACTCGGTGGCAGAACCAGAGGCG
TCAGAGCCGTCACCGGACTCAGTGGCAGAGGCAGAGGCGTCGGAACCGTCACCAGACTCGGTGGC
AGAACCAGAGGCGTCAGAGCCGTCACCGGACTCAGTGGCAGAGCCAGAGGCGTCGGAACCGTCGC
CAGACTCGGTGGCGGAGGCAGAAGCGTCACCAGCAGAGCCAGAGG
Right flanking sequence: Indices 92258 -- 92757
AGAGCCGGCGGCACCGCCAACAGCACCGCCGTTGTTGTCACCGTCGTTGTCGTTGTCACCAGTGG
AAGAGGCACCGGTCTCGGAGGCGTCGTCGCCGTCACCGCCAGTAGCGGTGGCAGAAACGGAAGCG
ACGTCAGAGGAGGCGTCGGAGCCGTCACCAGAGCCAGAGCCAGAGTCGTCACCGTCACCACCGCC
GATGGTGTTACCGTTCTGACCGTCCTGGTTTCTCAAGGGAATGGAACCAGAGTAGGCAGAGTACA
ATCTCGAGTAGGCAGTAATGTAGGCGGAGACGTCAGAGTAACCTCTGGGGATCGAAGCAGTGTTC
TCCTGGAGGAAAGACAACATCTGTTCGGGGTTACGGGTCTCAAAGTCGCCGTCAGCGGCGAGGGC
AACAGCAGCAAGAGCGAGCAATTGGTACTTCATTATGGGTATGGAGGGCTAATTCTTATGGGACC
GCCAGGTATTTATACCCCGCCCACACAATTTTTACTCACGCAGGA
Found at i:104882 original size:18 final size:18
Alignment explanation
Indices: 104859--104899 Score: 64
Period size: 18 Copynumber: 2.3 Consensus size: 18
104849 CAGCGACCAG
104859 CAACAAAAACAACAACAC
1 CAACAAAAACAACAACAC
* *
104877 CAACAACAACACCAACAC
1 CAACAAAAACAACAACAC
104895 CAACA
1 CAACA
104900 CACCAACACC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.61, C:0.39, G:0.00, T:0.00
Consensus pattern (18 bp):
CAACAAAAACAACAACAC
Left flanking sequence: Indices 104359 -- 104858
TAACCGGCCCCCTCTAACAAATTTCAGAGGTCTGCATGTAAAAACGGCCCCCTCTAACAAGCGAC
CACCCCACTATACGACGAGCTATACGATGACCATTCATTTCCTAAAGACTTTACGAGCATTACAT
AACACCTTATGTTAGTCGCTTTACGAGCTATATAGCCTAATGCGGCTTCCACGTCGTGTGATCCG
GGTCACGTGACTTTACCGTAGGTACCGTAGTAAGCGTTGATTATAGCGAGCCTGTACATATCCTA
TATATTACAATAAGCCCCCAGTACGGCTTCAGGGTAGCCCGCTCATGCAGGCTACCCCGAAGGCG
CACCCAGTGCTTAACTAAACAATTATAGAAACCCGGATTGGATACCAATGGCACAACCAACAGGG
GGAAAAAACGGCGCCAATGGCACCCGATCCAACGAATCGAATCGGATACCACTGACACCACCAAC
AGGGGGAAAAGGAGCCATTGGCATCCAACCCTTAACAGCGACCAG
Right flanking sequence: Indices 104900 -- 105399
CACCAACACCAACACACCAACACCAACACACCAACACCAACACACCAACACCAACACACCAACAC
CAACACACCAACACCAACACACCAACACCAACACACCAACACCAACACACCAACACCAACACACC
AACACCAACACACCAACACCAACACACCAATAAGAGGGGGTGGTACCGCTAGTACTTCTGATATC
GTCTCTCATATGGCAAAGGAAGCGAAACCCAGAGGCTTGCAACTCCCCGCGCCGACCACGGGATG
GTTCTGTGGCGATACCGCCCATCCTGACGCTAGATTGCACCCCCTACCTCCCGGCCCGTCGGCCA
TCGAGTAGAAGCGTGCAACTGCACATGTCAGGACTGTTCGAGGACCTGTAGCTGGTGGGTCGCGA
CGCCACCAGTAACAAACCCTGTCACCAGACCAACAGACGCTGAGCCATTACCATGGCGCGAAGCG
CCAACGGATAATGACCCAGCCGAGAGACTTCATCAGAAGTACCAA
Found at i:104904 original size:14 final size:14
Alignment explanation
Indices: 104868--105059 Score: 352
Period size: 14 Copynumber: 13.8 Consensus size: 14
104858 GCAACAAAAA
*
104868 CAACAACACCAACAA
1 CAAC-ACACCAACAC
104883 C-A-ACACCAACAC
1 CAACACACCAACAC
104895 CAACACACCAACAC
1 CAACACACCAACAC
104909 CAACACACCAACAC
1 CAACACACCAACAC
104923 CAACACACCAACAC
1 CAACACACCAACAC
104937 CAACACACCAACAC
1 CAACACACCAACAC
104951 CAACACACCAACAC
1 CAACACACCAACAC
104965 CAACACACCAACAC
1 CAACACACCAACAC
104979 CAACACACCAACAC
1 CAACACACCAACAC
104993 CAACACACCAACAC
1 CAACACACCAACAC
105007 CAACACACCAACAC
1 CAACACACCAACAC
105021 CAACACACCAACAC
1 CAACACACCAACAC
105035 CAACACACCAACAC
1 CAACACACCAACAC
105049 CAACACACCAA
1 CAACACACCAA
105060 TAAGAGGGGG
Statistics
Matches: 174, Mismatches: 1, Indels: 5
0.97 0.01 0.03
Matches are distributed among these distances:
12 10 0.06
13 1 0.01
14 162 0.93
15 1 0.01
ACGTcount: A:0.51, C:0.49, G:0.00, T:0.00
Consensus pattern (14 bp):
CAACACACCAACAC
Left flanking sequence: Indices 104368 -- 104867
CCCTCTAACAAATTTCAGAGGTCTGCATGTAAAAACGGCCCCCTCTAACAAGCGACCACCCCACT
ATACGACGAGCTATACGATGACCATTCATTTCCTAAAGACTTTACGAGCATTACATAACACCTTA
TGTTAGTCGCTTTACGAGCTATATAGCCTAATGCGGCTTCCACGTCGTGTGATCCGGGTCACGTG
ACTTTACCGTAGGTACCGTAGTAAGCGTTGATTATAGCGAGCCTGTACATATCCTATATATTACA
ATAAGCCCCCAGTACGGCTTCAGGGTAGCCCGCTCATGCAGGCTACCCCGAAGGCGCACCCAGTG
CTTAACTAAACAATTATAGAAACCCGGATTGGATACCAATGGCACAACCAACAGGGGGAAAAAAC
GGCGCCAATGGCACCCGATCCAACGAATCGAATCGGATACCACTGACACCACCAACAGGGGGAAA
AGGAGCCATTGGCATCCAACCCTTAACAGCGACCAGCAACAAAAA
Right flanking sequence: Indices 105060 -- 105559
TAAGAGGGGGTGGTACCGCTAGTACTTCTGATATCGTCTCTCATATGGCAAAGGAAGCGAAACCC
AGAGGCTTGCAACTCCCCGCGCCGACCACGGGATGGTTCTGTGGCGATACCGCCCATCCTGACGC
TAGATTGCACCCCCTACCTCCCGGCCCGTCGGCCATCGAGTAGAAGCGTGCAACTGCACATGTCA
GGACTGTTCGAGGACCTGTAGCTGGTGGGTCGCGACGCCACCAGTAACAAACCCTGTCACCAGAC
CAACAGACGCTGAGCCATTACCATGGCGCGAAGCGCCAACGGATAATGACCCAGCCGAGAGACTT
CATCAGAAGTACCAACAGCACCGAGGCTGTGGTGAGCAAGTATCACCACGCTAACGACAAGCTTT
TGTAGCCTCCTTGGGGGGATTTTTTTCCCCCATCTTCTTTGATTTTCTTTTTGCTTGTCGCTGCC
TTCCGTAGTAACGGGAAAGGAGCCGGACTTGCAGGGTGCAAGCGA
Done.