Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: scaffold35
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 987
ACGTcount: A:0.23, C:0.24, G:0.37, T:0.16
Found at i:154 original size:87 final size:86
Alignment explanation
Indices: 35--690 Score: 562
Period size: 87 Copynumber: 7.5 Consensus size: 86
25 GGGGCCGGTC
* * *
35 TCAGTGGGGCCAGTACCGGAAGGACCAGTCTCAGAGTCAGTGGGGCCGGTCTCAGTGGGGCCAGT
1 TCAGTGGGGCCGGTGCCAGAAGGACCAGTCTCAGAGTCAGTGGGGCCGGTCTCAGTGGGGCCAGT
*
100 ACTAGAAGGACCAGTCTCAGAG
66 -CCAGAAGGACCAGTCTCAGAG
** *
122 TCAGTGGGGCCGGTGCCAGAAGGACCAGTCTCAGAGTCAGTGGGGCCGGTGC-CAGAAGGACCAG
1 TCAGTGGGGCCGGTGCCAGAAGGACCAGTCTCAGAGTCAGTGGGGCCGGT-CTCAGTGGGGCCAG
* * **
186 TCTCAG-A-G-TCAGTGGGGC-CGGTC
65 TC-CAGAAGGACCAGT----CTCAGAG
* ** *
209 TCAGTGGGGCCAGTGCCAGAAGGACCAGTCTCAGAGTCAGTGGGGCCGGTGC-CAGAAGGACCAG
1 TCAGTGGGGCCGGTGCCAGAAGGACCAGTCTCAGAGTCAGTGGGGCCGGT-CTCAGTGGGGCCAG
* * **
273 TCTCAG-A-G-TCAGTGGGGC-CGGTC
65 TC-CAGAAGGACCAGT----CTCAGAG
296 TCAGTGGGGCCGGTGCCAGAAGGACCAGTCTCAGAGTCAGTGGGGCCGGTCTCAGTGGGGCCAGT
1 TCAGTGGGGCCGGTGCCAGAAGGACCAGTCTCAGAGTCAGTGGGGCCGGTCTCAGTGGGGCCAGT
*
361 ACCGGAAGGACCAGTCTCAGAG
66 -CCAGAAGGACCAGTCTCAGAG
** * * * * **
383 TCAGTGGGGCCGGT-CTCAGTGGGGCCAGTGC-CGGAAGGACCAGT----CTCAGAGTCAGTGGG
1 TCAGTGGGGCCGGTGC-CAGAAGGACCAGT-CTCAG-A-G-TCAGTGGGGC-CGGTCTCAGTGGG
*
442 GCCGGTGCCAGAAGGACCAGTCTCAGAG
60 GCCAGT-CCAGAAGGACCAGTCTCAGAG
*
470 TCAGTGGGGCCGGTGCCAGAAGGACCAGTCGCAGAGTCAGTGGGGCCGGTCTCAGTGGGGCCAGT
1 TCAGTGGGGCCGGTGCCAGAAGGACCAGTCTCAGAGTCAGTGGGGCCGGTCTCAGTGGGGCCAGT
535 GCCAGAAGGACCAGTCTCAGAG
66 -CCAGAAGGACCAGTCTCAGAG
* * ** *
557 TCAGTGGGGCCAGTACCAGAAGGACCAGTCTCAGAGTCAGTGGGGCCGGTGC-CAGAAGGACCAG
1 TCAGTGGGGCCGGTGCCAGAAGGACCAGTCTCAGAGTCAGTGGGGCCGGT-CTCAGTGGGGCCAG
* * **
621 TCGCAG-A-G-TCAGTGGGGC-CGGTC
65 TC-CAGAAGGACCAGT----CTCAGAG
644 TCAGTGGGGCCGGTGCCAGAAGGACCAGTCTCAGAGTCAGTGGGGCC
1 TCAGTGGGGCCGGTGCCAGAAGGACCAGTCTCAGAGTCAGTGGGGCC
691 AGTTTGCGAA
Statistics
Matches: 486, Mismatches: 53, Indels: 60
0.81 0.09 0.10
Matches are distributed among these distances:
84 12 0.02
85 3 0.01
86 10 0.02
87 441 0.91
88 10 0.02
89 2 0.00
90 8 0.02
ACGTcount: A:0.21, C:0.25, G:0.39, T:0.15
Consensus pattern (86 bp):
TCAGTGGGGCCGGTGCCAGAAGGACCAGTCTCAGAGTCAGTGGGGCCGGTCTCAGTGGGGCCAGT
CCAGAAGGACCAGTCTCAGAG
Left flanking sequence: Indices 1 -- 34
AGAAGGACCAGTCTCAGAGTCAGTGGGGCCGGTC
Right flanking sequence: Indices 691 -- 987
AGTTTGCGAAGTTTCCGGAGTGGAAATATCGCCAGTGTTCGAAGCAGAACCAGGCGTGGATGTTT
CACCTGTAGTAGACTCCGACGAAGGAACAGTCACGGTCACAGTGGGAGTGGTGGTAGTAGTATCA
GTCACCGTAATACAGTCAGAGTCCGTGGGAACAGTGACGCTCTCAGAGACAGTGTCCGAAGGACC
AGTAGGACCAGTGGGACCAGTAGGCTCAGAAGCGGAGTCAGAAGGACCAGTAGGACCAGTAGGCT
CAGAAGCGGAGTCAGAAGGACCAGTAGGACCAGTAGG
Found at i:222 original size:36 final size:36
Alignment explanation
Indices: 86--207 Score: 217
Period size: 36 Copynumber: 3.4 Consensus size: 36
76 GGGGCCGGTC
* * *
86 TCAGTGGGGCCAGTACTAGAAGGACCAGTCTCAGAG
1 TCAGTGGGGCCGGTGCCAGAAGGACCAGTCTCAGAG
122 TCAGTGGGGCCGGTGCCAGAAGGACCAGTCTCAGAG
1 TCAGTGGGGCCGGTGCCAGAAGGACCAGTCTCAGAG
158 TCAGTGGGGCCGGTGCCAGAAGGACCAGTCTCAGAG
1 TCAGTGGGGCCGGTGCCAGAAGGACCAGTCTCAGAG
194 TCAGTGGGGCCGGT
1 TCAGTGGGGCCGGT
208 CTCAGTGGGG
Statistics
Matches: 83, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 83 1.00
ACGTcount: A:0.22, C:0.24, G:0.39, T:0.16
Consensus pattern (36 bp):
TCAGTGGGGCCGGTGCCAGAAGGACCAGTCTCAGAG
Left flanking sequence: Indices 1 -- 85
AGAAGGACCAGTCTCAGAGTCAGTGGGGCCGGTCTCAGTGGGGCCAGTACCGGAAGGACCAGTCT
CAGAGTCAGTGGGGCCGGTC
Right flanking sequence: Indices 208 -- 707
CTCAGTGGGGCCAGTGCCAGAAGGACCAGTCTCAGAGTCAGTGGGGCCGGTGCCAGAAGGACCAG
TCTCAGAGTCAGTGGGGCCGGTCTCAGTGGGGCCGGTGCCAGAAGGACCAGTCTCAGAGTCAGTG
GGGCCGGTCTCAGTGGGGCCAGTACCGGAAGGACCAGTCTCAGAGTCAGTGGGGCCGGTCTCAGT
GGGGCCAGTGCCGGAAGGACCAGTCTCAGAGTCAGTGGGGCCGGTGCCAGAAGGACCAGTCTCAG
AGTCAGTGGGGCCGGTGCCAGAAGGACCAGTCGCAGAGTCAGTGGGGCCGGTCTCAGTGGGGCCA
GTGCCAGAAGGACCAGTCTCAGAGTCAGTGGGGCCAGTACCAGAAGGACCAGTCTCAGAGTCAGT
GGGGCCGGTGCCAGAAGGACCAGTCGCAGAGTCAGTGGGGCCGGTCTCAGTGGGGCCGGTGCCAG
AAGGACCAGTCTCAGAGTCAGTGGGGCCAGTTTGCGAAGTTTCCG
Found at i:254 original size:123 final size:122
Alignment explanation
Indices: 35--690 Score: 639
Period size: 123 Copynumber: 5.1 Consensus size: 122
25 GGGGCCGGTC
* * *
35 TCAGTGGGGCCAGTACCGGAAGGACCAGTCTCAGAGTCAGTGGGGCCGGTCTCAGTGGGGCCAGT
1 TCAGTGGGGCCGGTGCCAGAAGGACCAGTCTCAGAGTCAGTGGGGCCGGTCTCAGTGGGGCCAGT
*
100 ACTAGAAGGACCAGTCTCAGAGTCAGTGGGGCCGGTGCCAGAAGGACCAGTCTCAGAG
66 -CCAGAAGGACCAGTCTCAGAGTCAGTGGGGCCGGTGCCAGAAGGACCAGTCTCAGAG
158 TCAGTGGGGCCGGTGCCAGAAGGACCAGTCTCAGAGTCAGTGGGGCCGGTCTCAGTGGGGCCAGT
1 TCAGTGGGGCCGGTGCCAGAAGGACCAGTCTCAGAGTCAGTGGGGCCGGTCTCAGTGGGGCCAGT
223 GCCAGAAGGACCAGTCTCAGAGTCAGTGGGGCCGGTGCCAGAAGGACCAGTCTCAGAGTCAGTGG
66 -CCAGAAGGACCAGTCTCAGAGTCAGTGGGGCCGGTGCCAGAAGGACCAGTCTC--AG--A----
288 GGCCGG
122 -----G
294 TCTCAGTGGGGCCGGTGCCAGAAGGACCAGTCTCAGAGTCAGTGGGGCCGGTCTCAGTGGGGCCA
1 --TCAGTGGGGCCGGTGCCAGAAGGACCAGTCTCAGAGTCAGTGGGGCCGGTCTCAGTGGGGCCA
*
359 GTACCGGAAGGACCAGTCTCAGAGTCAGTGGGGCCGGTCTCAGTGGGGCCAGTGCCGGAAGGACC
64 GT-CCAGAAGGACCAGTCTCAGAGTCAGTGGGGCC-G-----GT---GCCA------GAAGGACC
424 AGTCTCAGAG
113 AGTCTCAGAG
** *
434 TCAGTGGGGCCGGTGCCAGAAGGACCAGTCTCAGAGTCAGTGGGGCCGGTGC-CAGAAGGACCAG
1 TCAGTGGGGCCGGTGCCAGAAGGACCAGTCTCAGAGTCAGTGGGGCCGGT-CTCAGTGGGGCCAG
* * ** *
498 TCGCAG-A-G-TCAGTGGGGC-CGGTCTCAGTGGGGCCAGTGCCAGAAGGACCAGTCTCAGAG
65 TC-CAGAAGGACCAGT----CTCAGAGTCAGTGGGGCCGGTGCCAGAAGGACCAGTCTCAGAG
* * ** *
557 TCAGTGGGGCCAGTACCAGAAGGACCAGTCTCAGAGTCAGTGGGGCCGGTGC-CAGAAGGACCAG
1 TCAGTGGGGCCGGTGCCAGAAGGACCAGTCTCAGAGTCAGTGGGGCCGGT-CTCAGTGGGGCCAG
* * **
621 TCGCAG-A-G-TCAGTGGGGC-CGGTCTCAGTGGGGCCGGTGCCAGAAGGACCAGTCTCAGAG
65 TC-CAGAAGGACCAGT----CTCAGAGTCAGTGGGGCCGGTGCCAGAAGGACCAGTCTCAGAG
680 TCAGTGGGGCC
1 TCAGTGGGGCC
691 AGTTTGCGAA
Statistics
Matches: 478, Mismatches: 19, Indels: 72
0.84 0.03 0.13
Matches are distributed among these distances:
123 263 0.55
125 2 0.00
127 1 0.00
129 4 0.01
132 2 0.00
135 4 0.01
136 2 0.00
137 2 0.00
138 171 0.36
139 3 0.01
140 1 0.00
144 2 0.00
147 4 0.01
149 1 0.00
151 2 0.00
153 14 0.03
ACGTcount: A:0.21, C:0.25, G:0.39, T:0.15
Consensus pattern (122 bp):
TCAGTGGGGCCGGTGCCAGAAGGACCAGTCTCAGAGTCAGTGGGGCCGGTCTCAGTGGGGCCAGT
CCAGAAGGACCAGTCTCAGAGTCAGTGGGGCCGGTGCCAGAAGGACCAGTCTCAGAG
Left flanking sequence: Indices 1 -- 34
AGAAGGACCAGTCTCAGAGTCAGTGGGGCCGGTC
Right flanking sequence: Indices 691 -- 987
AGTTTGCGAAGTTTCCGGAGTGGAAATATCGCCAGTGTTCGAAGCAGAACCAGGCGTGGATGTTT
CACCTGTAGTAGACTCCGACGAAGGAACAGTCACGGTCACAGTGGGAGTGGTGGTAGTAGTATCA
GTCACCGTAATACAGTCAGAGTCCGTGGGAACAGTGACGCTCTCAGAGACAGTGTCCGAAGGACC
AGTAGGACCAGTGGGACCAGTAGGCTCAGAAGCGGAGTCAGAAGGACCAGTAGGACCAGTAGGCT
CAGAAGCGGAGTCAGAAGGACCAGTAGGACCAGTAGG
Found at i:292 original size:36 final size:36
Alignment explanation
Indices: 209--294 Score: 163
Period size: 36 Copynumber: 2.4 Consensus size: 36
199 GGGGCCGGTC
*
209 TCAGTGGGGCCAGTGCCAGAAGGACCAGTCTCAGAG
1 TCAGTGGGGCCGGTGCCAGAAGGACCAGTCTCAGAG
245 TCAGTGGGGCCGGTGCCAGAAGGACCAGTCTCAGAG
1 TCAGTGGGGCCGGTGCCAGAAGGACCAGTCTCAGAG
281 TCAGTGGGGCCGGT
1 TCAGTGGGGCCGGT
295 CTCAGTGGGG
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
36 49 1.00
ACGTcount: A:0.21, C:0.24, G:0.40, T:0.15
Consensus pattern (36 bp):
TCAGTGGGGCCGGTGCCAGAAGGACCAGTCTCAGAG
Left flanking sequence: Indices 1 -- 208
AGAAGGACCAGTCTCAGAGTCAGTGGGGCCGGTCTCAGTGGGGCCAGTACCGGAAGGACCAGTCT
CAGAGTCAGTGGGGCCGGTCTCAGTGGGGCCAGTACTAGAAGGACCAGTCTCAGAGTCAGTGGGG
CCGGTGCCAGAAGGACCAGTCTCAGAGTCAGTGGGGCCGGTGCCAGAAGGACCAGTCTCAGAGTC
AGTGGGGCCGGTC
Right flanking sequence: Indices 295 -- 794
CTCAGTGGGGCCGGTGCCAGAAGGACCAGTCTCAGAGTCAGTGGGGCCGGTCTCAGTGGGGCCAG
TACCGGAAGGACCAGTCTCAGAGTCAGTGGGGCCGGTCTCAGTGGGGCCAGTGCCGGAAGGACCA
GTCTCAGAGTCAGTGGGGCCGGTGCCAGAAGGACCAGTCTCAGAGTCAGTGGGGCCGGTGCCAGA
AGGACCAGTCGCAGAGTCAGTGGGGCCGGTCTCAGTGGGGCCAGTGCCAGAAGGACCAGTCTCAG
AGTCAGTGGGGCCAGTACCAGAAGGACCAGTCTCAGAGTCAGTGGGGCCGGTGCCAGAAGGACCA
GTCGCAGAGTCAGTGGGGCCGGTCTCAGTGGGGCCGGTGCCAGAAGGACCAGTCTCAGAGTCAGT
GGGGCCAGTTTGCGAAGTTTCCGGAGTGGAAATATCGCCAGTGTTCGAAGCAGAACCAGGCGTGG
ATGTTTCACCTGTAGTAGACTCCGACGAAGGAACAGTCACGGTCA
Found at i:301 original size:15 final size:15
Alignment explanation
Indices: 281--309 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
271 AGTCTCAGAG
281 TCAGTGGGGCCGGTC
1 TCAGTGGGGCCGGTC
296 TCAGTGGGGCCGGT
1 TCAGTGGGGCCGGT
310 GCCAGAAGGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.07, C:0.24, G:0.48, T:0.21
Consensus pattern (15 bp):
TCAGTGGGGCCGGTC
Left flanking sequence: Indices 1 -- 280
AGAAGGACCAGTCTCAGAGTCAGTGGGGCCGGTCTCAGTGGGGCCAGTACCGGAAGGACCAGTCT
CAGAGTCAGTGGGGCCGGTCTCAGTGGGGCCAGTACTAGAAGGACCAGTCTCAGAGTCAGTGGGG
CCGGTGCCAGAAGGACCAGTCTCAGAGTCAGTGGGGCCGGTGCCAGAAGGACCAGTCTCAGAGTC
AGTGGGGCCGGTCTCAGTGGGGCCAGTGCCAGAAGGACCAGTCTCAGAGTCAGTGGGGCCGGTGC
CAGAAGGACCAGTCTCAGAG
Right flanking sequence: Indices 310 -- 809
GCCAGAAGGACCAGTCTCAGAGTCAGTGGGGCCGGTCTCAGTGGGGCCAGTACCGGAAGGACCAG
TCTCAGAGTCAGTGGGGCCGGTCTCAGTGGGGCCAGTGCCGGAAGGACCAGTCTCAGAGTCAGTG
GGGCCGGTGCCAGAAGGACCAGTCTCAGAGTCAGTGGGGCCGGTGCCAGAAGGACCAGTCGCAGA
GTCAGTGGGGCCGGTCTCAGTGGGGCCAGTGCCAGAAGGACCAGTCTCAGAGTCAGTGGGGCCAG
TACCAGAAGGACCAGTCTCAGAGTCAGTGGGGCCGGTGCCAGAAGGACCAGTCGCAGAGTCAGTG
GGGCCGGTCTCAGTGGGGCCGGTGCCAGAAGGACCAGTCTCAGAGTCAGTGGGGCCAGTTTGCGA
AGTTTCCGGAGTGGAAATATCGCCAGTGTTCGAAGCAGAACCAGGCGTGGATGTTTCACCTGTAG
TAGACTCCGACGAAGGAACAGTCACGGTCACAGTGGGAGTGGTGG
Found at i:462 original size:51 final size:51
Alignment explanation
Indices: 1--447 Score: 398
Period size: 51 Copynumber: 8.6 Consensus size: 51
*
1 AGAAGGACCAGTCTCAGAGTCAGTGGGGCCGGTCTCAGTGGGGCCAGTACC
1 AGAAGGACCAGTCTCAGAGTCAGTGGGGCCGGTCTCAGTGGGGCCAGTGCC
* * *
52 GGAAGGACCAGTCTCAGAGTCAGTGGGGCCGGTCTCAGTGGGGCCAGTACT
1 AGAAGGACCAGTCTCAGAGTCAGTGGGGCCGGTCTCAGTGGGGCCAGTGCC
** *
103 AGAAGGACCAGTCTCAGAGTCAGTGGGGCCGGTGC-CAGAAGGACCAGT-CTC
1 AGAAGGACCAGTCTCAGAGTCAGTGGGGCCGGT-CTCAGTGGGGCCAGTGC-C
* * * * ** *
154 AGAGTCAGTGGGGCCGGTGC-CAGAAGGACCAGT----CTCAGAGTCAGTGGGGCCGGT-CTC
1 AGA---A---GGACCAGT-CTCAG-A-G-TCAGTGGGGC-CGGTCTCAGTGGGGCCAGTGC-C
** * * * ** *
211 AGTGGGGCCAGTGC-CAGAAGGACCAGT----CTCAGAGTCAGTGGGGCCGGTGCC
1 AGAAGGACCAGT-CTCAG-A-G-TCAGTGGGGC-CGGTCTCAGTGGGGCCAGTGCC
*
262 AGAAGGACCAGTCTCAGAGTCAGTGGGGCCGGTCTCAGTGGGGCCGGTGCC
1 AGAAGGACCAGTCTCAGAGTCAGTGGGGCCGGTCTCAGTGGGGCCAGTGCC
*
313 AGAAGGACCAGTCTCAGAGTCAGTGGGGCCGGTCTCAGTGGGGCCAGTACC
1 AGAAGGACCAGTCTCAGAGTCAGTGGGGCCGGTCTCAGTGGGGCCAGTGCC
*
364 GGAAGGACCAGTCTCAGAGTCAGTGGGGCCGGTCTCAGTGGGGCCAGTGCC
1 AGAAGGACCAGTCTCAGAGTCAGTGGGGCCGGTCTCAGTGGGGCCAGTGCC
*
415 GGAAGGACCAGTCTCAGAGTCAGTGGGGCCGGT
1 AGAAGGACCAGTCTCAGAGTCAGTGGGGCCGGT
448 GCCAGAAGGA
Statistics
Matches: 345, Mismatches: 31, Indels: 40
0.83 0.07 0.10
Matches are distributed among these distances:
48 4 0.01
49 1 0.00
50 3 0.01
51 300 0.87
52 3 0.01
54 1 0.00
56 1 0.00
57 25 0.07
58 2 0.01
59 1 0.00
60 4 0.01
ACGTcount: A:0.20, C:0.25, G:0.39, T:0.15
Consensus pattern (51 bp):
AGAAGGACCAGTCTCAGAGTCAGTGGGGCCGGTCTCAGTGGGGCCAGTGCC
Left flanking sequence: None
Right flanking sequence: Indices 448 -- 947
GCCAGAAGGACCAGTCTCAGAGTCAGTGGGGCCGGTGCCAGAAGGACCAGTCGCAGAGTCAGTGG
GGCCGGTCTCAGTGGGGCCAGTGCCAGAAGGACCAGTCTCAGAGTCAGTGGGGCCAGTACCAGAA
GGACCAGTCTCAGAGTCAGTGGGGCCGGTGCCAGAAGGACCAGTCGCAGAGTCAGTGGGGCCGGT
CTCAGTGGGGCCGGTGCCAGAAGGACCAGTCTCAGAGTCAGTGGGGCCAGTTTGCGAAGTTTCCG
GAGTGGAAATATCGCCAGTGTTCGAAGCAGAACCAGGCGTGGATGTTTCACCTGTAGTAGACTCC
GACGAAGGAACAGTCACGGTCACAGTGGGAGTGGTGGTAGTAGTATCAGTCACCGTAATACAGTC
AGAGTCCGTGGGAACAGTGACGCTCTCAGAGACAGTGTCCGAAGGACCAGTAGGACCAGTGGGAC
CAGTAGGCTCAGAAGCGGAGTCAGAAGGACCAGTAGGACCAGTAG
Found at i:534 original size:36 final size:36
Alignment explanation
Indices: 398--519 Score: 217
Period size: 36 Copynumber: 3.4 Consensus size: 36
388 GGGGCCGGTC
* *
398 TCAGTGGGGCCAGTGCCGGAAGGACCAGTCTCAGAG
1 TCAGTGGGGCCGGTGCCAGAAGGACCAGTCTCAGAG
434 TCAGTGGGGCCGGTGCCAGAAGGACCAGTCTCAGAG
1 TCAGTGGGGCCGGTGCCAGAAGGACCAGTCTCAGAG
*
470 TCAGTGGGGCCGGTGCCAGAAGGACCAGTCGCAGAG
1 TCAGTGGGGCCGGTGCCAGAAGGACCAGTCTCAGAG
506 TCAGTGGGGCCGGT
1 TCAGTGGGGCCGGT
520 CTCAGTGGGG
Statistics
Matches: 83, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 83 1.00
ACGTcount: A:0.20, C:0.25, G:0.41, T:0.14
Consensus pattern (36 bp):
TCAGTGGGGCCGGTGCCAGAAGGACCAGTCTCAGAG
Left flanking sequence: Indices 1 -- 397
AGAAGGACCAGTCTCAGAGTCAGTGGGGCCGGTCTCAGTGGGGCCAGTACCGGAAGGACCAGTCT
CAGAGTCAGTGGGGCCGGTCTCAGTGGGGCCAGTACTAGAAGGACCAGTCTCAGAGTCAGTGGGG
CCGGTGCCAGAAGGACCAGTCTCAGAGTCAGTGGGGCCGGTGCCAGAAGGACCAGTCTCAGAGTC
AGTGGGGCCGGTCTCAGTGGGGCCAGTGCCAGAAGGACCAGTCTCAGAGTCAGTGGGGCCGGTGC
CAGAAGGACCAGTCTCAGAGTCAGTGGGGCCGGTCTCAGTGGGGCCGGTGCCAGAAGGACCAGTC
TCAGAGTCAGTGGGGCCGGTCTCAGTGGGGCCAGTACCGGAAGGACCAGTCTCAGAGTCAGTGGG
GCCGGTC
Right flanking sequence: Indices 520 -- 987
CTCAGTGGGGCCAGTGCCAGAAGGACCAGTCTCAGAGTCAGTGGGGCCAGTACCAGAAGGACCAG
TCTCAGAGTCAGTGGGGCCGGTGCCAGAAGGACCAGTCGCAGAGTCAGTGGGGCCGGTCTCAGTG
GGGCCGGTGCCAGAAGGACCAGTCTCAGAGTCAGTGGGGCCAGTTTGCGAAGTTTCCGGAGTGGA
AATATCGCCAGTGTTCGAAGCAGAACCAGGCGTGGATGTTTCACCTGTAGTAGACTCCGACGAAG
GAACAGTCACGGTCACAGTGGGAGTGGTGGTAGTAGTATCAGTCACCGTAATACAGTCAGAGTCC
GTGGGAACAGTGACGCTCTCAGAGACAGTGTCCGAAGGACCAGTAGGACCAGTGGGACCAGTAGG
CTCAGAAGCGGAGTCAGAAGGACCAGTAGGACCAGTAGGCTCAGAAGCGGAGTCAGAAGGACCAG
TAGGACCAGTAGG
Found at i:546 original size:51 final size:51
Alignment explanation
Indices: 470--567 Score: 178
Period size: 51 Copynumber: 1.9 Consensus size: 51
460 AGTCTCAGAG
*
470 TCAGTGGGGCCGGTGCCAGAAGGACCAGTCGCAGAGTCAGTGGGGCCGGTC
1 TCAGTGGGGCCAGTGCCAGAAGGACCAGTCGCAGAGTCAGTGGGGCCGGTC
*
521 TCAGTGGGGCCAGTGCCAGAAGGACCAGTCTCAGAGTCAGTGGGGCC
1 TCAGTGGGGCCAGTGCCAGAAGGACCAGTCGCAGAGTCAGTGGGGCC
568 AGTACCAGAA
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
51 45 1.00
ACGTcount: A:0.19, C:0.26, G:0.41, T:0.14
Consensus pattern (51 bp):
TCAGTGGGGCCAGTGCCAGAAGGACCAGTCGCAGAGTCAGTGGGGCCGGTC
Left flanking sequence: Indices 1 -- 469
AGAAGGACCAGTCTCAGAGTCAGTGGGGCCGGTCTCAGTGGGGCCAGTACCGGAAGGACCAGTCT
CAGAGTCAGTGGGGCCGGTCTCAGTGGGGCCAGTACTAGAAGGACCAGTCTCAGAGTCAGTGGGG
CCGGTGCCAGAAGGACCAGTCTCAGAGTCAGTGGGGCCGGTGCCAGAAGGACCAGTCTCAGAGTC
AGTGGGGCCGGTCTCAGTGGGGCCAGTGCCAGAAGGACCAGTCTCAGAGTCAGTGGGGCCGGTGC
CAGAAGGACCAGTCTCAGAGTCAGTGGGGCCGGTCTCAGTGGGGCCGGTGCCAGAAGGACCAGTC
TCAGAGTCAGTGGGGCCGGTCTCAGTGGGGCCAGTACCGGAAGGACCAGTCTCAGAGTCAGTGGG
GCCGGTCTCAGTGGGGCCAGTGCCGGAAGGACCAGTCTCAGAGTCAGTGGGGCCGGTGCCAGAAG
GACCAGTCTCAGAG
Right flanking sequence: Indices 568 -- 987
AGTACCAGAAGGACCAGTCTCAGAGTCAGTGGGGCCGGTGCCAGAAGGACCAGTCGCAGAGTCAG
TGGGGCCGGTCTCAGTGGGGCCGGTGCCAGAAGGACCAGTCTCAGAGTCAGTGGGGCCAGTTTGC
GAAGTTTCCGGAGTGGAAATATCGCCAGTGTTCGAAGCAGAACCAGGCGTGGATGTTTCACCTGT
AGTAGACTCCGACGAAGGAACAGTCACGGTCACAGTGGGAGTGGTGGTAGTAGTATCAGTCACCG
TAATACAGTCAGAGTCCGTGGGAACAGTGACGCTCTCAGAGACAGTGTCCGAAGGACCAGTAGGA
CCAGTGGGACCAGTAGGCTCAGAAGCGGAGTCAGAAGGACCAGTAGGACCAGTAGGCTCAGAAGC
GGAGTCAGAAGGACCAGTAGGACCAGTAGG
Found at i:585 original size:51 final size:51
Alignment explanation
Indices: 482--585 Score: 147
Period size: 51 Copynumber: 2.0 Consensus size: 51
472 AGTGGGGCCG
* ** *
482 GTGCCAGAAGGACCAGTCGCAGAGTCAGTGGGGCCGGTCTCAGTGGGGCCA
1 GTGCCAGAAGGACCAGTCGCAGAGTCAGTGGGGCCAGTCTCAGAAGGACCA
*
533 GTGCCAGAAGGACCAGTCTCAGAGTCAGTGGGGCCAGTAC-CAGAAGGACCA
1 GTGCCAGAAGGACCAGTCGCAGAGTCAGTGGGGCCAGT-CTCAGAAGGACCA
584 GT
1 GT
586 CTCAGAGTCA
Statistics
Matches: 47, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
51 46 0.98
52 1 0.02
ACGTcount: A:0.24, C:0.25, G:0.38, T:0.13
Consensus pattern (51 bp):
GTGCCAGAAGGACCAGTCGCAGAGTCAGTGGGGCCAGTCTCAGAAGGACCA
Left flanking sequence: Indices 1 -- 481
AGAAGGACCAGTCTCAGAGTCAGTGGGGCCGGTCTCAGTGGGGCCAGTACCGGAAGGACCAGTCT
CAGAGTCAGTGGGGCCGGTCTCAGTGGGGCCAGTACTAGAAGGACCAGTCTCAGAGTCAGTGGGG
CCGGTGCCAGAAGGACCAGTCTCAGAGTCAGTGGGGCCGGTGCCAGAAGGACCAGTCTCAGAGTC
AGTGGGGCCGGTCTCAGTGGGGCCAGTGCCAGAAGGACCAGTCTCAGAGTCAGTGGGGCCGGTGC
CAGAAGGACCAGTCTCAGAGTCAGTGGGGCCGGTCTCAGTGGGGCCGGTGCCAGAAGGACCAGTC
TCAGAGTCAGTGGGGCCGGTCTCAGTGGGGCCAGTACCGGAAGGACCAGTCTCAGAGTCAGTGGG
GCCGGTCTCAGTGGGGCCAGTGCCGGAAGGACCAGTCTCAGAGTCAGTGGGGCCGGTGCCAGAAG
GACCAGTCTCAGAGTCAGTGGGGCCG
Right flanking sequence: Indices 586 -- 987
CTCAGAGTCAGTGGGGCCGGTGCCAGAAGGACCAGTCGCAGAGTCAGTGGGGCCGGTCTCAGTGG
GGCCGGTGCCAGAAGGACCAGTCTCAGAGTCAGTGGGGCCAGTTTGCGAAGTTTCCGGAGTGGAA
ATATCGCCAGTGTTCGAAGCAGAACCAGGCGTGGATGTTTCACCTGTAGTAGACTCCGACGAAGG
AACAGTCACGGTCACAGTGGGAGTGGTGGTAGTAGTATCAGTCACCGTAATACAGTCAGAGTCCG
TGGGAACAGTGACGCTCTCAGAGACAGTGTCCGAAGGACCAGTAGGACCAGTGGGACCAGTAGGC
TCAGAAGCGGAGTCAGAAGGACCAGTAGGACCAGTAGGCTCAGAAGCGGAGTCAGAAGGACCAGT
AGGACCAGTAGG
Found at i:642 original size:36 final size:36
Alignment explanation
Indices: 521--639 Score: 211
Period size: 36 Copynumber: 3.3 Consensus size: 36
511 GGGGCCGGTC
521 TCAGTGGGGCCAGTGCCAGAAGGACCAGTCTCAGAG
1 TCAGTGGGGCCAGTGCCAGAAGGACCAGTCTCAGAG
*
557 TCAGTGGGGCCAGTACCAGAAGGACCAGTCTCAGAG
1 TCAGTGGGGCCAGTGCCAGAAGGACCAGTCTCAGAG
* *
593 TCAGTGGGGCCGGTGCCAGAAGGACCAGTCGCAGAG
1 TCAGTGGGGCCAGTGCCAGAAGGACCAGTCTCAGAG
629 TCAGTGGGGCC
1 TCAGTGGGGCC
640 GGTCTCAGTG
Statistics
Matches: 79, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
36 79 1.00
ACGTcount: A:0.24, C:0.25, G:0.38, T:0.13
Consensus pattern (36 bp):
TCAGTGGGGCCAGTGCCAGAAGGACCAGTCTCAGAG
Left flanking sequence: Indices 21 -- 520
CAGTGGGGCCGGTCTCAGTGGGGCCAGTACCGGAAGGACCAGTCTCAGAGTCAGTGGGGCCGGTC
TCAGTGGGGCCAGTACTAGAAGGACCAGTCTCAGAGTCAGTGGGGCCGGTGCCAGAAGGACCAGT
CTCAGAGTCAGTGGGGCCGGTGCCAGAAGGACCAGTCTCAGAGTCAGTGGGGCCGGTCTCAGTGG
GGCCAGTGCCAGAAGGACCAGTCTCAGAGTCAGTGGGGCCGGTGCCAGAAGGACCAGTCTCAGAG
TCAGTGGGGCCGGTCTCAGTGGGGCCGGTGCCAGAAGGACCAGTCTCAGAGTCAGTGGGGCCGGT
CTCAGTGGGGCCAGTACCGGAAGGACCAGTCTCAGAGTCAGTGGGGCCGGTCTCAGTGGGGCCAG
TGCCGGAAGGACCAGTCTCAGAGTCAGTGGGGCCGGTGCCAGAAGGACCAGTCTCAGAGTCAGTG
GGGCCGGTGCCAGAAGGACCAGTCGCAGAGTCAGTGGGGCCGGTC
Right flanking sequence: Indices 640 -- 987
GGTCTCAGTGGGGCCGGTGCCAGAAGGACCAGTCTCAGAGTCAGTGGGGCCAGTTTGCGAAGTTT
CCGGAGTGGAAATATCGCCAGTGTTCGAAGCAGAACCAGGCGTGGATGTTTCACCTGTAGTAGAC
TCCGACGAAGGAACAGTCACGGTCACAGTGGGAGTGGTGGTAGTAGTATCAGTCACCGTAATACA
GTCAGAGTCCGTGGGAACAGTGACGCTCTCAGAGACAGTGTCCGAAGGACCAGTAGGACCAGTGG
GACCAGTAGGCTCAGAAGCGGAGTCAGAAGGACCAGTAGGACCAGTAGGCTCAGAAGCGGAGTCA
GAAGGACCAGTAGGACCAGTAGG
Found at i:649 original size:15 final size:15
Alignment explanation
Indices: 629--657 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
619 AGTCGCAGAG
629 TCAGTGGGGCCGGTC
1 TCAGTGGGGCCGGTC
644 TCAGTGGGGCCGGT
1 TCAGTGGGGCCGGT
658 GCCAGAAGGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.07, C:0.24, G:0.48, T:0.21
Consensus pattern (15 bp):
TCAGTGGGGCCGGTC
Left flanking sequence: Indices 129 -- 628
GGCCGGTGCCAGAAGGACCAGTCTCAGAGTCAGTGGGGCCGGTGCCAGAAGGACCAGTCTCAGAG
TCAGTGGGGCCGGTCTCAGTGGGGCCAGTGCCAGAAGGACCAGTCTCAGAGTCAGTGGGGCCGGT
GCCAGAAGGACCAGTCTCAGAGTCAGTGGGGCCGGTCTCAGTGGGGCCGGTGCCAGAAGGACCAG
TCTCAGAGTCAGTGGGGCCGGTCTCAGTGGGGCCAGTACCGGAAGGACCAGTCTCAGAGTCAGTG
GGGCCGGTCTCAGTGGGGCCAGTGCCGGAAGGACCAGTCTCAGAGTCAGTGGGGCCGGTGCCAGA
AGGACCAGTCTCAGAGTCAGTGGGGCCGGTGCCAGAAGGACCAGTCGCAGAGTCAGTGGGGCCGG
TCTCAGTGGGGCCAGTGCCAGAAGGACCAGTCTCAGAGTCAGTGGGGCCAGTACCAGAAGGACCA
GTCTCAGAGTCAGTGGGGCCGGTGCCAGAAGGACCAGTCGCAGAG
Right flanking sequence: Indices 658 -- 987
GCCAGAAGGACCAGTCTCAGAGTCAGTGGGGCCAGTTTGCGAAGTTTCCGGAGTGGAAATATCGC
CAGTGTTCGAAGCAGAACCAGGCGTGGATGTTTCACCTGTAGTAGACTCCGACGAAGGAACAGTC
ACGGTCACAGTGGGAGTGGTGGTAGTAGTATCAGTCACCGTAATACAGTCAGAGTCCGTGGGAAC
AGTGACGCTCTCAGAGACAGTGTCCGAAGGACCAGTAGGACCAGTGGGACCAGTAGGCTCAGAAG
CGGAGTCAGAAGGACCAGTAGGACCAGTAGGCTCAGAAGCGGAGTCAGAAGGACCAGTAGGACCA
GTAGG
Found at i:653 original size:51 final size:51
Alignment explanation
Indices: 593--690 Score: 187
Period size: 51 Copynumber: 1.9 Consensus size: 51
583 AGTCTCAGAG
593 TCAGTGGGGCCGGTGCCAGAAGGACCAGTCGCAGAGTCAGTGGGGCCGGTC
1 TCAGTGGGGCCGGTGCCAGAAGGACCAGTCGCAGAGTCAGTGGGGCCGGTC
*
644 TCAGTGGGGCCGGTGCCAGAAGGACCAGTCTCAGAGTCAGTGGGGCC
1 TCAGTGGGGCCGGTGCCAGAAGGACCAGTCGCAGAGTCAGTGGGGCC
691 AGTTTGCGAA
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
51 46 1.00
ACGTcount: A:0.18, C:0.26, G:0.42, T:0.14
Consensus pattern (51 bp):
TCAGTGGGGCCGGTGCCAGAAGGACCAGTCGCAGAGTCAGTGGGGCCGGTC
Left flanking sequence: Indices 93 -- 592
GGCCAGTACTAGAAGGACCAGTCTCAGAGTCAGTGGGGCCGGTGCCAGAAGGACCAGTCTCAGAG
TCAGTGGGGCCGGTGCCAGAAGGACCAGTCTCAGAGTCAGTGGGGCCGGTCTCAGTGGGGCCAGT
GCCAGAAGGACCAGTCTCAGAGTCAGTGGGGCCGGTGCCAGAAGGACCAGTCTCAGAGTCAGTGG
GGCCGGTCTCAGTGGGGCCGGTGCCAGAAGGACCAGTCTCAGAGTCAGTGGGGCCGGTCTCAGTG
GGGCCAGTACCGGAAGGACCAGTCTCAGAGTCAGTGGGGCCGGTCTCAGTGGGGCCAGTGCCGGA
AGGACCAGTCTCAGAGTCAGTGGGGCCGGTGCCAGAAGGACCAGTCTCAGAGTCAGTGGGGCCGG
TGCCAGAAGGACCAGTCGCAGAGTCAGTGGGGCCGGTCTCAGTGGGGCCAGTGCCAGAAGGACCA
GTCTCAGAGTCAGTGGGGCCAGTACCAGAAGGACCAGTCTCAGAG
Right flanking sequence: Indices 691 -- 987
AGTTTGCGAAGTTTCCGGAGTGGAAATATCGCCAGTGTTCGAAGCAGAACCAGGCGTGGATGTTT
CACCTGTAGTAGACTCCGACGAAGGAACAGTCACGGTCACAGTGGGAGTGGTGGTAGTAGTATCA
GTCACCGTAATACAGTCAGAGTCCGTGGGAACAGTGACGCTCTCAGAGACAGTGTCCGAAGGACC
AGTAGGACCAGTGGGACCAGTAGGCTCAGAAGCGGAGTCAGAAGGACCAGTAGGACCAGTAGGCT
CAGAAGCGGAGTCAGAAGGACCAGTAGGACCAGTAGG
Found at i:894 original size:9 final size:9
Alignment explanation
Indices: 880--987 Score: 67
Period size: 9 Copynumber: 11.3 Consensus size: 9
870 CAGTGTCCGA
880 AGGACCAGT
1 AGGACCAGT
889 AGGACCAGT
1 AGGACCAGT
*
898 GGGACCAGT
1 AGGACCAGT
*
907 AGG-CTCAGA
1 AGGAC-CAGT
* *
916 AGCGGAGTCAGA
1 A--GGA-CCAGT
928 AGGACCAGT
1 AGGACCAGT
937 AGGACCAGT
1 AGGACCAGT
*
946 AGG-CTCAGA
1 AGGAC-CAGT
* *
955 AGCGGAGTCAGA
1 A--GGA-CCAGT
967 AGGACCAGT
1 AGGACCAGT
976 AGGACCAGT
1 AGGACCAGT
985 AGG
1 AGG
Statistics
Matches: 79, Mismatches: 10, Indels: 20
0.72 0.09 0.18
Matches are distributed among these distances:
8 2 0.03
9 57 0.72
10 6 0.08
11 4 0.05
12 10 0.13
ACGTcount: A:0.32, C:0.20, G:0.37, T:0.10
Consensus pattern (9 bp):
AGGACCAGT
Left flanking sequence: Indices 380 -- 879
GAGTCAGTGGGGCCGGTCTCAGTGGGGCCAGTGCCGGAAGGACCAGTCTCAGAGTCAGTGGGGCC
GGTGCCAGAAGGACCAGTCTCAGAGTCAGTGGGGCCGGTGCCAGAAGGACCAGTCGCAGAGTCAG
TGGGGCCGGTCTCAGTGGGGCCAGTGCCAGAAGGACCAGTCTCAGAGTCAGTGGGGCCAGTACCA
GAAGGACCAGTCTCAGAGTCAGTGGGGCCGGTGCCAGAAGGACCAGTCGCAGAGTCAGTGGGGCC
GGTCTCAGTGGGGCCGGTGCCAGAAGGACCAGTCTCAGAGTCAGTGGGGCCAGTTTGCGAAGTTT
CCGGAGTGGAAATATCGCCAGTGTTCGAAGCAGAACCAGGCGTGGATGTTTCACCTGTAGTAGAC
TCCGACGAAGGAACAGTCACGGTCACAGTGGGAGTGGTGGTAGTAGTATCAGTCACCGTAATACA
GTCAGAGTCCGTGGGAACAGTGACGCTCTCAGAGACAGTGTCCGA
Right flanking sequence: None
Found at i:930 original size:48 final size:47
Alignment explanation
Indices: 878--984 Score: 149
Period size: 39 Copynumber: 2.4 Consensus size: 47
868 GACAGTGTCC
878 GAAGGACCAGTAGGACCAGTGGGACCAGTAGGCTCAGAAGCGGAGTCA
1 GAAGGACCAGTAGGACCAGT-GGACCAGTAGGCTCAGAAGCGGAGTCA
926 GAAGGACCAGT------A--GGACCAGTAGGCTCAGAAGCGGAGTCA
1 GAAGGACCAGTAGGACCAGTGGACCAGTAGGCTCAGAAGCGGAGTCA
965 GAAGGACCAGTAGGACCAGT
1 GAAGGACCAGTAGGACCAGT
985 AGG
Statistics
Matches: 51, Mismatches: 0, Indels: 17
0.75 0.00 0.25
Matches are distributed among these distances:
39 38 0.75
42 1 0.02
45 1 0.02
48 11 0.22
ACGTcount: A:0.33, C:0.21, G:0.36, T:0.10
Consensus pattern (47 bp):
GAAGGACCAGTAGGACCAGTGGACCAGTAGGCTCAGAAGCGGAGTCA
Left flanking sequence: Indices 378 -- 877
CAGAGTCAGTGGGGCCGGTCTCAGTGGGGCCAGTGCCGGAAGGACCAGTCTCAGAGTCAGTGGGG
CCGGTGCCAGAAGGACCAGTCTCAGAGTCAGTGGGGCCGGTGCCAGAAGGACCAGTCGCAGAGTC
AGTGGGGCCGGTCTCAGTGGGGCCAGTGCCAGAAGGACCAGTCTCAGAGTCAGTGGGGCCAGTAC
CAGAAGGACCAGTCTCAGAGTCAGTGGGGCCGGTGCCAGAAGGACCAGTCGCAGAGTCAGTGGGG
CCGGTCTCAGTGGGGCCGGTGCCAGAAGGACCAGTCTCAGAGTCAGTGGGGCCAGTTTGCGAAGT
TTCCGGAGTGGAAATATCGCCAGTGTTCGAAGCAGAACCAGGCGTGGATGTTTCACCTGTAGTAG
ACTCCGACGAAGGAACAGTCACGGTCACAGTGGGAGTGGTGGTAGTAGTATCAGTCACCGTAATA
CAGTCAGAGTCCGTGGGAACAGTGACGCTCTCAGAGACAGTGTCC
Right flanking sequence: Indices 985 -- 987
AGG
Found at i:932 original size:39 final size:39
Alignment explanation
Indices: 889--987 Score: 189
Period size: 39 Copynumber: 2.5 Consensus size: 39
879 AAGGACCAGT
*
889 AGGACCAGTGGGACCAGTAGGCTCAGAAGCGGAGTCAGA
1 AGGACCAGTAGGACCAGTAGGCTCAGAAGCGGAGTCAGA
928 AGGACCAGTAGGACCAGTAGGCTCAGAAGCGGAGTCAGA
1 AGGACCAGTAGGACCAGTAGGCTCAGAAGCGGAGTCAGA
967 AGGACCAGTAGGACCAGTAGG
1 AGGACCAGTAGGACCAGTAGG
Statistics
Matches: 59, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
39 59 1.00
ACGTcount: A:0.32, C:0.20, G:0.37, T:0.10
Consensus pattern (39 bp):
AGGACCAGTAGGACCAGTAGGCTCAGAAGCGGAGTCAGA
Left flanking sequence: Indices 389 -- 888
GGGCCGGTCTCAGTGGGGCCAGTGCCGGAAGGACCAGTCTCAGAGTCAGTGGGGCCGGTGCCAGA
AGGACCAGTCTCAGAGTCAGTGGGGCCGGTGCCAGAAGGACCAGTCGCAGAGTCAGTGGGGCCGG
TCTCAGTGGGGCCAGTGCCAGAAGGACCAGTCTCAGAGTCAGTGGGGCCAGTACCAGAAGGACCA
GTCTCAGAGTCAGTGGGGCCGGTGCCAGAAGGACCAGTCGCAGAGTCAGTGGGGCCGGTCTCAGT
GGGGCCGGTGCCAGAAGGACCAGTCTCAGAGTCAGTGGGGCCAGTTTGCGAAGTTTCCGGAGTGG
AAATATCGCCAGTGTTCGAAGCAGAACCAGGCGTGGATGTTTCACCTGTAGTAGACTCCGACGAA
GGAACAGTCACGGTCACAGTGGGAGTGGTGGTAGTAGTATCAGTCACCGTAATACAGTCAGAGTC
CGTGGGAACAGTGACGCTCTCAGAGACAGTGTCCGAAGGACCAGT
Right flanking sequence: None
Done.