Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: scaffold14
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 34100
ACGTcount: A:0.23, C:0.27, G:0.27, T:0.23
Found at i:294 original size:26 final size:26
Alignment explanation
Indices: 1--288 Score: 544
Period size: 26 Copynumber: 11.2 Consensus size: 26
1 CGCAAATGCTGAGAAAAGATTCTAAC
1 CGCAAATGCTGAGAAAAGATTCTAAC
27 CGCAAATGCTGAGAAAAGATTCTAAC
1 CGCAAATGCTGAGAAAAGATTCTAAC
53 CGCAAATGCTGAGAAAAGATTCTAAC
1 CGCAAATGCTGAGAAAAGATTCTAAC
*
79 CGCAAATGCTGAGAAAAGA-TCAAAC
1 CGCAAATGCTGAGAAAAGATTCTAAC
*
104 CGCAAATGCTGAGAAAAGA-TCAAAC
1 CGCAAATGCTGAGAAAAGATTCTAAC
129 CGCAAATGCTGAGAAAAGATTCTAAC
1 CGCAAATGCTGAGAAAAGATTCTAAC
155 CGCAAATGCTGAGAAAAGATTCTAAC
1 CGCAAATGCTGAGAAAAGATTCTAAC
181 CGCAAATGCTGAGAAAAGATTCTAAC
1 CGCAAATGCTGAGAAAAGATTCTAAC
207 CGCAAATGCTGAGAAAAGATTCTAAC
1 CGCAAATGCTGAGAAAAGATTCTAAC
233 CGCAAATGCTGAGAAAAGATTCTAAC
1 CGCAAATGCTGAGAAAAGATTCTAAC
259 CGCAAATGCTGAGAAAAGATTCTAAC
1 CGCAAATGCTGAGAAAAGATTCTAAC
285 CGCA
1 CGCA
289 GCTGCTACAA
Statistics
Matches: 259, Mismatches: 2, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
25 49 0.19
26 210 0.81
ACGTcount: A:0.43, C:0.20, G:0.19, T:0.18
Consensus pattern (26 bp):
CGCAAATGCTGAGAAAAGATTCTAAC
Left flanking sequence: None
Right flanking sequence: Indices 289 -- 788
GCTGCTACAAAAGAATGGTATACTTTCTCTGTGACGACTCGATTGGATTCACACGATTATGAAGC
TGAAAATATCATGTGAAATGCTTCTCTCAATCTCCGTAGCATGCAGCAAAATGTCGTGATCTGTA
GCTCACTAGATAACGCACTGTTAAGCAGCGAGAGGGATTGGACAAAATTTTTGGACATTCCGTGA
AATTTTCCTGGCAGCGTCAGGTTTTTCCTTGTAAGTCACTTCACATTCTGATGATTTGGCTGTTA
CTAAGCTAGTAGTCCCTGGGGCGACATTGTGTGTGGTCTCACTTAAAACGGAGAATAAAAAGTGC
CTTTCGTCAAACAGATCTTGTCGTAAAAGTCTACAATAATTAGAGTTGAATCCATTCTGTGCGAA
TTATTCAAAGGCTTTTAAGACTTGTTTAACCAAACGTAGGAAGCGCTTCGAGCTCTTCATAAGCC
ATTTTGAGCAGAATTCTGGGATTTATTCTCAACATTTCATCCCAC
Found at i:2256 original size:84 final size:84
Alignment explanation
Indices: 2112--2450 Score: 606
Period size: 84 Copynumber: 4.0 Consensus size: 84
2102 ACGAAATCAG
* * * * *
2112 GCGAGAAGAATGAATCTACGTCGTCCCCCGAGTTATTTCAGTTTCTCGCGAGGGATGAGTGTTGA
1 GCGAGGAGAATGAATGTACGTCGTCCCCCGAATTATTTCAGTGTCTCGCGAGGGACGAGTGTTGA
2177 CCCTGTCTTCTCGAACGGT
66 CCCTGTCTTCTCGAACGGT
2196 GCGAGGAGAATGAATGTACGTCGTCCCCCGAATTATTTCAGTGTCTCGCGAGGGACGAGTGTTGA
1 GCGAGGAGAATGAATGTACGTCGTCCCCCGAATTATTTCAGTGTCTCGCGAGGGACGAGTGTTGA
2261 CCCTGTCTTCTCGAACGGT
66 CCCTGTCTTCTCGAACGGT
2280 GCGAGGAGAATGAATGTACGTCGTCCCCCGAATTATTTCAGTGTCTCGCGAGGGACGAGTGTTGA
1 GCGAGGAGAATGAATGTACGTCGTCCCCCGAATTATTTCAGTGTCTCGCGAGGGACGAGTGTTGA
2345 CCCTGTCTTCTCGAACGGT
66 CCCTGTCTTCTCGAACGGT
* * *
2364 GCGAGGAGAATGAATGTATGTCGTCCCCCGAATTATTTCAGTTTCTCGCGAGGGATGAGTGTTGA
1 GCGAGGAGAATGAATGTACGTCGTCCCCCGAATTATTTCAGTGTCTCGCGAGGGACGAGTGTTGA
2429 CCCTGTCTTCTCGAACGGT
66 CCCTGTCTTCTCGAACGGT
2448 GCG
1 GCG
2451 GGGACCATGG
Statistics
Matches: 247, Mismatches: 8, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
84 247 1.00
ACGTcount: A:0.20, C:0.23, G:0.29, T:0.27
Consensus pattern (84 bp):
GCGAGGAGAATGAATGTACGTCGTCCCCCGAATTATTTCAGTGTCTCGCGAGGGACGAGTGTTGA
CCCTGTCTTCTCGAACGGT
Left flanking sequence: Indices 1612 -- 2111
TTTGAATTGCGGGAACCTCTGCGAAGAAGAGCACGGATGTAGACAGTTCCTTCCATATCCAATTC
AATGTGATACTCGTTATTGAAGGTATCGCCATAACACTCGATAAAGTAGTCTGTGATCTCTTCAA
CACATTTGTATGGGTCTCTTCGAGGAATAGAGGCAAGGACAAGTGACAGGAGTGCCATGATCCCC
AACCTCATGTTGATGATTTTCAGAGGCAGATGTAACGGATTGCGTGATAAGTATTACAGTGGGTA
TTTCTTTTTCGGATAACCTGCACGTTCCCAGAATTCACAGCTATTCATGTCAAATTATGACTCAT
TGGTTATTCAGGTGGTTTATTTATCTCGTTGAAACACGCTGTAGCTGGGTTCAACGGACGCAAGC
GGCTCAATTTGAGTCATTTGTTGAGGAGCTGTATGGTATCCTTCGGTAGGAAAGCCTATAGATGC
TATTTTCGCTCATCAGTCATTCAGCTCGTTGGGTAACGAAATCAG
Right flanking sequence: Indices 2451 -- 2950
GGGACCATGGATATAGGTAGTCTCTTGAACATCCTCGAAGGGGGAATGAATGTAGGTCGTCCCAT
GAAAAACCTCCTCCCGAGGGGAGTGAAGGTGGGTCGTTTCATGATCGCGTCGGGTACCGTTCTCG
GGACAGTCTCTCTTGAAATGACCAGGCTCACCACATTTGAAGCACTTCTTCGGACGTTTCGGCTT
CCGGTTTTTTGGTGGTGGTGAGTCATAAATATCCACATGCTTCGGTGCTGGAGAGTCAAAAATAT
CCACATGCATCGGTGCTTGAGAGTCAAAAATATCCACATGCATCGGTGCTTGAGAGTCAAAAATA
TCCACATGCTTCAGGTACCAATTTATGAGACAACCTATCAGGGGCTCTAATCCCTCAAAGCAATC
CACCATGGCGTCTGCTTCTTCTATAGACATTTTAAGAAGGGGTACTACCGCCATTATTTCCCCGC
AGTCACTCAAGAACTCCCGCTTCAGTAAAACCAACCCGCGTCCAT
Found at i:2709 original size:33 final size:33
Alignment explanation
Indices: 2656--2784 Score: 204
Period size: 33 Copynumber: 3.9 Consensus size: 33
2646 CCGGTTTTTT
* * * *
2656 GGTGGTGGTGAGTCATAAATATCCACATGCTTC
1 GGTGCTGGAGAGTCAAAAATATCCACATGCATC
2689 GGTGCTGGAGAGTCAAAAATATCCACATGCATC
1 GGTGCTGGAGAGTCAAAAATATCCACATGCATC
*
2722 GGTGCTTGAGAGTCAAAAATATCCACATGCATC
1 GGTGCTGGAGAGTCAAAAATATCCACATGCATC
*
2755 GGTGCTTGAGAGTCAAAAATATCCACATGC
1 GGTGCTGGAGAGTCAAAAATATCCACATGC
2785 TTCAGGTACC
Statistics
Matches: 91, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
33 91 1.00
ACGTcount: A:0.31, C:0.20, G:0.24, T:0.25
Consensus pattern (33 bp):
GGTGCTGGAGAGTCAAAAATATCCACATGCATC
Left flanking sequence: Indices 2156 -- 2655
CTCGCGAGGGATGAGTGTTGACCCTGTCTTCTCGAACGGTGCGAGGAGAATGAATGTACGTCGTC
CCCCGAATTATTTCAGTGTCTCGCGAGGGACGAGTGTTGACCCTGTCTTCTCGAACGGTGCGAGG
AGAATGAATGTACGTCGTCCCCCGAATTATTTCAGTGTCTCGCGAGGGACGAGTGTTGACCCTGT
CTTCTCGAACGGTGCGAGGAGAATGAATGTATGTCGTCCCCCGAATTATTTCAGTTTCTCGCGAG
GGATGAGTGTTGACCCTGTCTTCTCGAACGGTGCGGGGACCATGGATATAGGTAGTCTCTTGAAC
ATCCTCGAAGGGGGAATGAATGTAGGTCGTCCCATGAAAAACCTCCTCCCGAGGGGAGTGAAGGT
GGGTCGTTTCATGATCGCGTCGGGTACCGTTCTCGGGACAGTCTCTCTTGAAATGACCAGGCTCA
CCACATTTGAAGCACTTCTTCGGACGTTTCGGCTTCCGGTTTTTT
Right flanking sequence: Indices 2785 -- 3284
TTCAGGTACCAATTTATGAGACAACCTATCAGGGGCTCTAATCCCTCAAAGCAATCCACCATGGC
GTCTGCTTCTTCTATAGACATTTTAAGAAGGGGTACTACCGCCATTATTTCCCCGCAGTCACTCA
AGAACTCCCGCTTCAGTAAAACCAACCCGCGTCCATAGTAGTACATATCGGTTTTGAAGTCAATC
ACAGGTACACAGGTCAGTGTGTACACCATCGTTTGCACTTGCTCGGCTAGATTGCGTTTGACATA
GGTATCAAAAAGGTGGTATACGGTCTCCGCCAACGATGGCTTGGTAATCTCAAAGTTGGAGCCCC
AACATTTAGACTGTTTGCACCACAAAATGAACATCTGGTTCATTTGGAATAACATCTTCCTCGTT
TCATTGGCACCATAAACGATGCCTTTGTCGTTTGCCAACTTGATGTCCCACTCAGGGGTGTGATC
AGGAGCTAGGTCAATCCACCGCAGAGCCGCGTCACAAAGTTCTGC
Found at i:6734 original size:11 final size:11
Alignment explanation
Indices: 6710--6744 Score: 52
Period size: 11 Copynumber: 3.2 Consensus size: 11
6700 TGATCAGGGT
* *
6710 TGAACCATGCG
1 TGAACAATGTG
6721 TGAACAATGTG
1 TGAACAATGTG
6732 TGAACAATGTG
1 TGAACAATGTG
6743 TG
1 TG
6745 TCAAAGATCT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.31, C:0.14, G:0.29, T:0.26
Consensus pattern (11 bp):
TGAACAATGTG
Left flanking sequence: Indices 6210 -- 6709
TACTTGGCGTTGTTGCCGTAGGGCCGGATGAGCTGGAGGGTCAGCACCTCGTCGCACTCAACGGC
AGTTTGTACAAGACGGTCGCATCCGGGAGAGGCGTGTACGGCAATAAGGGGCAGGTAGTGGTGGT
GCAACAAGTGTTGTCGACACGTGTACGGGTCGAGGCCGAACGGGTAGTCCATGGGAGACGGAGGA
CTGTGGTACACGGTGGTGTTTGGTGTGGGCACTGAGCTGTTTGGAGGTGTGCGGTCGGTGTGGGC
TCAAAACCAATGGGGGAGACGGTAAGGTGGGGGATGAAAAGACAAAGCGTGGTGGTGACGAGCAT
TGCTGGGACGGTAAAGGCTACGGTTTTATGCTTGTTAACGGTGCGGATTGTGCTTTTTTAAGGTG
GTTTGTGGTGGTAGCAAAGAACGATGAATTAGAAGTGGGTAGACGAAGTAGACAACGAGAGTACA
CGACGGAAGACGGGAAGAGTAGACAGTAGACGGAGTGATCAGGGT
Right flanking sequence: Indices 6745 -- 7244
TCAAAGATCTAGAGTACCACCATCCCCTTTTATCTTTTCCATTCTGTTTTCCAAATATCTTACGG
AATTTGGGCGACCATCTACTTTAACGAGTCGGAAACTCGTAGACCGAGACGCCTGTGGTCGTGAT
TGAGCGCTGGGTGAGGACGTTCTCCACCTGTAAACGAGCAACTCTTCGGGTCACGAGACCATCAT
TCTTAGTCTACATTCTGAAAGAAGATTCTCTCGTTTTGTATTAGTGTAGACTGCTCAACTACCCA
AACAACCACTCAAAAGCTACCTATCCAACCCACACCCAACCCAAACCATCCACACCACCCACACC
ACCGCCTCGCCTCACCCGTCCATCTCCTTCTCATCTCTTCCTCCAGCCACACCTATTGCGAGCCC
CGTCCTCTAGCCGAGCCAGCGCGTGGTGTGCACACAACCTGGTGTTTACATCCTGTACATGGCCC
CACGGATCAGCTGGTCACTGGAACCAACCCCCGATTCCAGCAGAC
Found at i:7674 original size:15 final size:15
Alignment explanation
Indices: 7637--7759 Score: 94
Period size: 17 Copynumber: 7.9 Consensus size: 15
7627 CCACACGCTC
7637 CACACCAGTGC-CAA
1 CACACCAGTGCACAA
7651 CAC-CCAGTGCA-AA
1 CACACCAGTGCACAA
7664 CACACCTAGTGCACACA
1 CACACC-AGTGCACA-A
*
7681 CACACTTAGTGCACACA
1 CACAC-CAGTGCACA-A
7698 CACACCCAGTGCACGAA
1 CACA-CCAGTGCAC-AA
*
7715 CACACCCAGTGTACAGA
1 CACA-CCAGTGCACA-A
*
7732 CAC-CCAGTACAC-A
1 CACACCAGTGCACAA
*
7745 CCCACCCAGTGCACA
1 CACA-CCAGTGCACA
7760 CTCAGTACAC
Statistics
Matches: 90, Mismatches: 7, Indels: 22
0.76 0.06 0.18
Matches are distributed among these distances:
13 15 0.17
14 5 0.06
15 21 0.23
16 2 0.02
17 45 0.50
18 2 0.02
ACGTcount: A:0.35, C:0.41, G:0.14, T:0.10
Consensus pattern (15 bp):
CACACCAGTGCACAA
Left flanking sequence: Indices 7137 -- 7636
TCCTCTAGCCGAGCCAGCGCGTGGTGTGCACACAACCTGGTGTTTACATCCTGTACATGGCCCCA
CGGATCAGCTGGTCACTGGAACCAACCCCCGATTCCAGCAGACCCTGGGAGACAACCCCCCCAGT
AAACCACACCACTGAAACCACCCAGCCCCCGTAACCCCCCCACCGCGTTTTCTAACCTAAATTAC
CCCGTGTCACCGGGTAAACCCCCCATTCCCTCGCTACCGCCTCGCGAGAAAAAACGCACGATTAA
ATCCAAACACTTCATTCCCGTTGCAACCTGTCCCTCGCTAGCCGGAACACTGTCGGCGCCCCCAG
GAGAAACGACGGTATTTGTTGGAGCAGCTCCAGTTAGCACCCTTACGAGTCTTTTTGCTCAAACC
TTTTCACGTTTCGTGTTCACATACGCGACTGGGACACTAACGCGGCCAGCCTCAGTGCATCTTGA
GACGCTAAGGACGTGAACCACCACTACCGCACGTTCCACACGCTC
Right flanking sequence: Indices 7760 -- 8259
CTCAGTACACCCACCCAGTGCACACCCACACACCCTAACCACCACATACCATGCTTCCGAGGCTA
CTATTATCCCTAGTGGCGGCCACGCTCGCGTCCGCCGCCGACATCGTCCACCCCGCGTTCGCCTT
CGACTCGTTTGGCGGCCGGCTCGGGCTCTTGGGCGACTTTGACCTGCTCTCGTCGTTCGACACCG
TCAACCAGACCCAGGCCCAGGACGGGTCGGGCGACCACCTCTTCCTCTACGACTCGTCGTCGCTG
CGGGTGAGCGCGGCGGGCCACGTCAACGGCATCATCTCCGACGTCCAGCCCATGGGTGACGAGTC
GGTGGTGGTCAACGGCAACATCACCGAGGTCAACGGAAACCAGGTCCAGGCCCCGTTCATCTACA
ACTGGAAAAACAAGACCGCGCGCGCCCTTCTCCCCTCCACAAACAAGCGCGACGACTCGTCTCTC
AACGGCGAGGTGTCCACCTTCTTGGTGGACGGCGACCTCATCTAC
Found at i:7685 original size:17 final size:17
Alignment explanation
Indices: 7650--7760 Score: 110
Period size: 17 Copynumber: 6.9 Consensus size: 17
7640 ACCAGTGCCA
7650 ACACCCAGTGCA-A-AC
1 ACACCCAGTGCACACAC
*
7665 ACACCTAGTGCACACAC
1 ACACCCAGTGCACACAC
**
7682 ACACTTAGTGCACACAC
1 ACACCCAGTGCACACAC
7699 ACACCCAGTGCACGA-AC
1 ACACCCAGTGCAC-ACAC
* *
7716 ACACCCAGTG--TACAG
1 ACACCCAGTGCACACAC
7731 ACACCCAGT--ACACAC
1 ACACCCAGTGCACACAC
*
7746 CCACCCAGTGCACAC
1 ACACCCAGTGCACAC
7761 TCAGTACACC
Statistics
Matches: 80, Mismatches: 9, Indels: 12
0.79 0.09 0.12
Matches are distributed among these distances:
14 1 0.01
15 32 0.40
16 1 0.01
17 45 0.56
18 1 0.01
ACGTcount: A:0.35, C:0.41, G:0.14, T:0.10
Consensus pattern (17 bp):
ACACCCAGTGCACACAC
Left flanking sequence: Indices 7150 -- 7649
CCAGCGCGTGGTGTGCACACAACCTGGTGTTTACATCCTGTACATGGCCCCACGGATCAGCTGGT
CACTGGAACCAACCCCCGATTCCAGCAGACCCTGGGAGACAACCCCCCCAGTAAACCACACCACT
GAAACCACCCAGCCCCCGTAACCCCCCCACCGCGTTTTCTAACCTAAATTACCCCGTGTCACCGG
GTAAACCCCCCATTCCCTCGCTACCGCCTCGCGAGAAAAAACGCACGATTAAATCCAAACACTTC
ATTCCCGTTGCAACCTGTCCCTCGCTAGCCGGAACACTGTCGGCGCCCCCAGGAGAAACGACGGT
ATTTGTTGGAGCAGCTCCAGTTAGCACCCTTACGAGTCTTTTTGCTCAAACCTTTTCACGTTTCG
TGTTCACATACGCGACTGGGACACTAACGCGGCCAGCCTCAGTGCATCTTGAGACGCTAAGGACG
TGAACCACCACTACCGCACGTTCCACACGCTCCACACCAGTGCCA
Right flanking sequence: Indices 7761 -- 8260
TCAGTACACCCACCCAGTGCACACCCACACACCCTAACCACCACATACCATGCTTCCGAGGCTAC
TATTATCCCTAGTGGCGGCCACGCTCGCGTCCGCCGCCGACATCGTCCACCCCGCGTTCGCCTTC
GACTCGTTTGGCGGCCGGCTCGGGCTCTTGGGCGACTTTGACCTGCTCTCGTCGTTCGACACCGT
CAACCAGACCCAGGCCCAGGACGGGTCGGGCGACCACCTCTTCCTCTACGACTCGTCGTCGCTGC
GGGTGAGCGCGGCGGGCCACGTCAACGGCATCATCTCCGACGTCCAGCCCATGGGTGACGAGTCG
GTGGTGGTCAACGGCAACATCACCGAGGTCAACGGAAACCAGGTCCAGGCCCCGTTCATCTACAA
CTGGAAAAACAAGACCGCGCGCGCCCTTCTCCCCTCCACAAACAAGCGCGACGACTCGTCTCTCA
ACGGCGAGGTGTCCACCTTCTTGGTGGACGGCGACCTCATCTACC
Found at i:7760 original size:15 final size:15
Alignment explanation
Indices: 7651--7788 Score: 81
Period size: 15 Copynumber: 9.2 Consensus size: 15
7641 CCAGTGCCAA
* *
7651 CACCCAGTGCAAACA
1 CACCCAGTGCACACC
*
7666 CACCTAGTGCACACAC
1 CACCCAGTGCACAC-C
**
7682 ACACTTAGTGCACACAC
1 -CACCCAGTGCACAC-C
*
7699 ACACCCAGTGCACGAACA
1 -CACCCAGTGCAC--ACC
* **
7717 CACCCAGTGTACAGA
1 CACCCAGTGCACACC
*
7732 CACCCAGTACACACC
1 CACCCAGTGCACACC
7747 CACCCAGTG--CA--
1 CACCCAGTGCACACC
*
7758 CACTCAGT--ACACC
1 CACCCAGTGCACACC
7771 CACCCAGTGCACACC
1 CACCCAGTGCACACC
7786 CAC
1 CAC
7789 ACACCCTAAC
Statistics
Matches: 98, Mismatches: 16, Indels: 18
0.74 0.12 0.14
Matches are distributed among these distances:
11 9 0.09
13 9 0.09
15 41 0.42
17 37 0.38
19 2 0.02
ACGTcount: A:0.33, C:0.43, G:0.13, T:0.10
Consensus pattern (15 bp):
CACCCAGTGCACACC
Left flanking sequence: Indices 7151 -- 7650
CAGCGCGTGGTGTGCACACAACCTGGTGTTTACATCCTGTACATGGCCCCACGGATCAGCTGGTC
ACTGGAACCAACCCCCGATTCCAGCAGACCCTGGGAGACAACCCCCCCAGTAAACCACACCACTG
AAACCACCCAGCCCCCGTAACCCCCCCACCGCGTTTTCTAACCTAAATTACCCCGTGTCACCGGG
TAAACCCCCCATTCCCTCGCTACCGCCTCGCGAGAAAAAACGCACGATTAAATCCAAACACTTCA
TTCCCGTTGCAACCTGTCCCTCGCTAGCCGGAACACTGTCGGCGCCCCCAGGAGAAACGACGGTA
TTTGTTGGAGCAGCTCCAGTTAGCACCCTTACGAGTCTTTTTGCTCAAACCTTTTCACGTTTCGT
GTTCACATACGCGACTGGGACACTAACGCGGCCAGCCTCAGTGCATCTTGAGACGCTAAGGACGT
GAACCACCACTACCGCACGTTCCACACGCTCCACACCAGTGCCAA
Right flanking sequence: Indices 7789 -- 8288
ACACCCTAACCACCACATACCATGCTTCCGAGGCTACTATTATCCCTAGTGGCGGCCACGCTCGC
GTCCGCCGCCGACATCGTCCACCCCGCGTTCGCCTTCGACTCGTTTGGCGGCCGGCTCGGGCTCT
TGGGCGACTTTGACCTGCTCTCGTCGTTCGACACCGTCAACCAGACCCAGGCCCAGGACGGGTCG
GGCGACCACCTCTTCCTCTACGACTCGTCGTCGCTGCGGGTGAGCGCGGCGGGCCACGTCAACGG
CATCATCTCCGACGTCCAGCCCATGGGTGACGAGTCGGTGGTGGTCAACGGCAACATCACCGAGG
TCAACGGAAACCAGGTCCAGGCCCCGTTCATCTACAACTGGAAAAACAAGACCGCGCGCGCCCTT
CTCCCCTCCACAAACAAGCGCGACGACTCGTCTCTCAACGGCGAGGTGTCCACCTTCTTGGTGGA
CGGCGACCTCATCTACCTCGGCGGAGACTTCGAGTTCAATGGCAC
Found at i:9941 original size:12 final size:12
Alignment explanation
Indices: 9924--9971 Score: 87
Period size: 12 Copynumber: 4.0 Consensus size: 12
9914 CTACTGGTGA
9924 CCAGTTTGCTGG
1 CCAGTTTGCTGG
9936 CCAGTTTGCTGG
1 CCAGTTTGCTGG
*
9948 CCCGTTTGCTGG
1 CCAGTTTGCTGG
9960 CCAGTTTGCTGG
1 CCAGTTTGCTGG
9972 TGACCAGTTC
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 34 1.00
ACGTcount: A:0.06, C:0.27, G:0.33, T:0.33
Consensus pattern (12 bp):
CCAGTTTGCTGG
Left flanking sequence: Indices 9424 -- 9923
GGCCACTTGGACGGCGACCACGAGTACCGGGTGGAGATGAGCTACGTGGGCCAGGTGACGCCCGG
GACGGAGCCGTTCGTGGTGGCGGACCGGTTGCTGGTGCTCACGGTGAGCATCGACGACGACCAGC
GCACGGAGAACGAGGCCGGCAACGGCACGTCGTTCCGGCTCAACCGCACGGTCACGGGCGGGGTG
GCGCGGGTCAAGCTCAACGGGTTGTTTGAGTACTCGCTCGCCAACTTCTCGGACTTTGACGCCGC
CAACTTGACCCGAGGCGACTACGTGGGCAACTCGCTGATCAACTTGCTCTCGGGGCGGTTGCCTG
AGGGGGCCAACGTGCTGCAGATCGCCACCAGCGCTTCGGGGATGGTGGTGCTTGGCGACAACCTC
GGCTCCGAGGTGCTTTCTTTTGCAAAGAAGGGCTACAACTCCACGGGCGGCGAGGCGTTGGTGCT
GGTATTGGACGGTAAGTTAGCGCGTAGAGACCAGGCTACTGGTGA
Right flanking sequence: Indices 9972 -- 10471
TGACCAGTTCGAGCTTGCTGGCTTTGACGTGGCCCAGCCTGACGGTAAGCTAGTCCGCAGGGACC
AGTTTGAGCTTGCTGGGGCCCAGTTCGACGGCAAGCCTTCCAGCGTGTTTGCTGCCGGCTCGCAG
TGGGTGTTCTTGGGCAACTTTTCCGTGGGCAACTTCTCCAACGTGGCCGTGTACGACACCGACAA
GAAGGCGTGGAAGGGGCTCAAGCAGGCCCCCGACGCGGTGTACACCCAGTTTGCCAACTCCACCA
TCGACGACACCGAGTACTGGGTGTTTTCCAACGCAAAGAACGAGTATTTGCAGGTGGAGCCCAAG
GACTTCGTCAGCGCTCCTAACCTGAACGATAAGCGGGCGGAGCGGGCGTTGGCGTCGGAAGCCCT
TGCCAAGCGACCTTCTCTCTTCAAACGGGCGTCGTCGGCGTCCAAGCCCGACCTCCGGGTGCGGC
TGGCGGTGCCCGTGCTGGACTCCCAGCAGCTCCTCTCGGGCTCGG
Found at i:12262 original size:20 final size:20
Alignment explanation
Indices: 12215--12337 Score: 183
Period size: 20 Copynumber: 6.0 Consensus size: 20
12205 CAACATAATC
* *
12215 TCTGATGGACTGGTACTTAATC
1 TCTGATGGACTGGTTC-T-ATT
12237 TCTGATGGACTGGTTCTATT
1 TCTGATGGACTGGTTCTATT
*
12257 TCTGATGGACTGGTTCTAATC
1 TCTGATGGACTGGTTCT-ATT
*
12278 TCTGATGGACTAGTTCTATT
1 TCTGATGGACTGGTTCTATT
12298 TCTGATGGACTGGTTCTATT
1 TCTGATGGACTGGTTCTATT
12318 TCTGATGGACTGGTTCTATT
1 TCTGATGGACTGGTTCTATT
12338 GTAGATTCAT
Statistics
Matches: 94, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
20 60 0.64
21 19 0.20
22 15 0.16
ACGTcount: A:0.18, C:0.16, G:0.24, T:0.42
Consensus pattern (20 bp):
TCTGATGGACTGGTTCTATT
Left flanking sequence: Indices 11715 -- 12214
GCTCGACGGCAACTACTACGACCACCCGGACCAGCGCATCGACGAGAAGGAGATGATGGACGCCG
TGAACCCGGACGACTTGTTGCACGAGATCGACTTGCACCGGCCGCCGAACTAATTTTTATGGATT
TGAATAGAGAATATATGTAATAGGAAGCAGAGGGTGTGTGGTGCTTGTGGTACGTACCAGCATGC
CAGAGCGACAAGCTAATCTGATGTGACTGGTTCCATACTGTTGGCTCCCATATACCTGGTTACAC
TCTTAACCAAATACGGTAGCCATCTAATTGGTAGCCTTCTGATTGTGACCTACATTCTGGATATT
TTTCCACTATATAGAATAGAGTCTCCCGACTACTGGGATCACCATCTAATTCCATGACCGCACGT
CATACCCTTCGATCTGAGTAAGAATCCAACATGTCTAATACGACAAGAAAATCCCCAACAGAGCT
TTCGGCCCTTGGCTTCTGACCCCGAGGTCGGGTCACAACATAATC
Right flanking sequence: Indices 12338 -- 12837
GTAGATTCATTGTGCATTGATGCCCTGCGTTCAATATTCGTAATCTATTGTTAGCCTTGCCAAGC
CTTCTCATAACCCCCACGAGGGCACTCGCCAAACTGGGAATACGAATATACGAGGTAAGTATATA
GATGTAGAAACTCCGAGGACACAATCTATGCTCTACAACTACACCACCGACGATGTCCCGAGCAA
GTACCAGATCTACTGGCTGAGTCCGAGCTACTGTGCGACCCTGATGTATTCCTACAACTGGCCCC
AGCTCAACCTCGACGGGTCCACCATCGTTTGCGCCACTCCAATGACAAAGTACGATGAGGACATA
CGGAGGTTCCTCATTGTGGAGACCGTCGTCGACGATCTGTCGTTTTCGGGGTTCGTTTCCGCCGA
AGCGAGAAACGAGTCCTACTTTAATCGCTGTAACTACCGTTGTAAGTCTGCTGAATTCGTGAACC
ACTCGGAGTACTGCCTCTACCTGGCCGCCGACTACGGGGTGTGTA
Found at i:12286 original size:41 final size:41
Alignment explanation
Indices: 12215--12337 Score: 203
Period size: 41 Copynumber: 3.0 Consensus size: 41
12205 CAACATAATC
*
12215 TCTGATGGACTGGTACTTAATCTCTGATGGACTGGTTCTATT
1 TCTGATGGACTGGTTC-TAATCTCTGATGGACTGGTTCTATT
*
12257 TCTGATGGACTGGTTCTAATCTCTGATGGACTAGTTCTATT
1 TCTGATGGACTGGTTCTAATCTCTGATGGACTGGTTCTATT
*
12298 TCTGATGGACTGGTTCT-ATTTCTGATGGACTGGTTCTATT
1 TCTGATGGACTGGTTCTAATCTCTGATGGACTGGTTCTATT
12338 GTAGATTCAT
Statistics
Matches: 77, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
40 21 0.27
41 41 0.53
42 15 0.19
ACGTcount: A:0.18, C:0.16, G:0.24, T:0.42
Consensus pattern (41 bp):
TCTGATGGACTGGTTCTAATCTCTGATGGACTGGTTCTATT
Left flanking sequence: Indices 11715 -- 12214
GCTCGACGGCAACTACTACGACCACCCGGACCAGCGCATCGACGAGAAGGAGATGATGGACGCCG
TGAACCCGGACGACTTGTTGCACGAGATCGACTTGCACCGGCCGCCGAACTAATTTTTATGGATT
TGAATAGAGAATATATGTAATAGGAAGCAGAGGGTGTGTGGTGCTTGTGGTACGTACCAGCATGC
CAGAGCGACAAGCTAATCTGATGTGACTGGTTCCATACTGTTGGCTCCCATATACCTGGTTACAC
TCTTAACCAAATACGGTAGCCATCTAATTGGTAGCCTTCTGATTGTGACCTACATTCTGGATATT
TTTCCACTATATAGAATAGAGTCTCCCGACTACTGGGATCACCATCTAATTCCATGACCGCACGT
CATACCCTTCGATCTGAGTAAGAATCCAACATGTCTAATACGACAAGAAAATCCCCAACAGAGCT
TTCGGCCCTTGGCTTCTGACCCCGAGGTCGGGTCACAACATAATC
Right flanking sequence: Indices 12338 -- 12837
GTAGATTCATTGTGCATTGATGCCCTGCGTTCAATATTCGTAATCTATTGTTAGCCTTGCCAAGC
CTTCTCATAACCCCCACGAGGGCACTCGCCAAACTGGGAATACGAATATACGAGGTAAGTATATA
GATGTAGAAACTCCGAGGACACAATCTATGCTCTACAACTACACCACCGACGATGTCCCGAGCAA
GTACCAGATCTACTGGCTGAGTCCGAGCTACTGTGCGACCCTGATGTATTCCTACAACTGGCCCC
AGCTCAACCTCGACGGGTCCACCATCGTTTGCGCCACTCCAATGACAAAGTACGATGAGGACATA
CGGAGGTTCCTCATTGTGGAGACCGTCGTCGACGATCTGTCGTTTTCGGGGTTCGTTTCCGCCGA
AGCGAGAAACGAGTCCTACTTTAATCGCTGTAACTACCGTTGTAAGTCTGCTGAATTCGTGAACC
ACTCGGAGTACTGCCTCTACCTGGCCGCCGACTACGGGGTGTGTA
Found at i:12313 original size:61 final size:63
Alignment explanation
Indices: 12210--12335 Score: 211
Period size: 61 Copynumber: 2.0 Consensus size: 63
12200 GGTCACAACA
*
12210 TAATCTCTGATGGACTGGTACTTAATCTCTGATGGACTGGTTCTATTTCTGATGGACTGGTTC
1 TAATCTCTGATGGACTAGTACTTAATCTCTGATGGACTGGTTCTATTTCTGATGGACTGGTTC
* *
12273 TAATCTCTGATGGACTAGTTC-T-ATTTCTGATGGACTGGTTCTATTTCTGATGGACTGGTTC
1 TAATCTCTGATGGACTAGTACTTAATCTCTGATGGACTGGTTCTATTTCTGATGGACTGGTTC
12334 TA
1 TA
12336 TTGTAGATTC
Statistics
Matches: 60, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
61 40 0.67
62 1 0.02
63 19 0.32
ACGTcount: A:0.19, C:0.17, G:0.23, T:0.41
Consensus pattern (63 bp):
TAATCTCTGATGGACTAGTACTTAATCTCTGATGGACTGGTTCTATTTCTGATGGACTGGTTC
Left flanking sequence: Indices 11710 -- 12209
AAGCAGCTCGACGGCAACTACTACGACCACCCGGACCAGCGCATCGACGAGAAGGAGATGATGGA
CGCCGTGAACCCGGACGACTTGTTGCACGAGATCGACTTGCACCGGCCGCCGAACTAATTTTTAT
GGATTTGAATAGAGAATATATGTAATAGGAAGCAGAGGGTGTGTGGTGCTTGTGGTACGTACCAG
CATGCCAGAGCGACAAGCTAATCTGATGTGACTGGTTCCATACTGTTGGCTCCCATATACCTGGT
TACACTCTTAACCAAATACGGTAGCCATCTAATTGGTAGCCTTCTGATTGTGACCTACATTCTGG
ATATTTTTCCACTATATAGAATAGAGTCTCCCGACTACTGGGATCACCATCTAATTCCATGACCG
CACGTCATACCCTTCGATCTGAGTAAGAATCCAACATGTCTAATACGACAAGAAAATCCCCAACA
GAGCTTTCGGCCCTTGGCTTCTGACCCCGAGGTCGGGTCACAACA
Right flanking sequence: Indices 12336 -- 12835
TTGTAGATTCATTGTGCATTGATGCCCTGCGTTCAATATTCGTAATCTATTGTTAGCCTTGCCAA
GCCTTCTCATAACCCCCACGAGGGCACTCGCCAAACTGGGAATACGAATATACGAGGTAAGTATA
TAGATGTAGAAACTCCGAGGACACAATCTATGCTCTACAACTACACCACCGACGATGTCCCGAGC
AAGTACCAGATCTACTGGCTGAGTCCGAGCTACTGTGCGACCCTGATGTATTCCTACAACTGGCC
CCAGCTCAACCTCGACGGGTCCACCATCGTTTGCGCCACTCCAATGACAAAGTACGATGAGGACA
TACGGAGGTTCCTCATTGTGGAGACCGTCGTCGACGATCTGTCGTTTTCGGGGTTCGTTTCCGCC
GAAGCGAGAAACGAGTCCTACTTTAATCGCTGTAACTACCGTTGTAAGTCTGCTGAATTCGTGAA
CCACTCGGAGTACTGCCTCTACCTGGCCGCCGACTACGGGGTGTG
Found at i:13793 original size:30 final size:30
Alignment explanation
Indices: 13752--13817 Score: 105
Period size: 30 Copynumber: 2.2 Consensus size: 30
13742 GTGCAAACTG
*
13752 GCCCATCGGGGGCTCAGGAAGACCAGCACC
1 GCCCATCGGGGGCTCAGGAAGACCAGAACC
* *
13782 GCCCATGGGGGGCTCGGGAAGACCAGAACC
1 GCCCATCGGGGGCTCAGGAAGACCAGAACC
13812 GCCCAT
1 GCCCAT
13818 TCGATGCACG
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
30 33 1.00
ACGTcount: A:0.23, C:0.35, G:0.35, T:0.08
Consensus pattern (30 bp):
GCCCATCGGGGGCTCAGGAAGACCAGAACC
Left flanking sequence: Indices 13252 -- 13751
AGCTCTGGTAGTTAATATATTCTTGAGTATGGTGGCTTCTCTGGAACGTTGTCCCCATTGTTAGA
TATATGGATATCGTCTCTCGCATCATCTGTTTGCAAGTTCACGAATCTCCTTCTTTGTTTTCTTT
ACAATCTGGATCCCCTTGCCTGTATTCGAACTCGGGACCAATGCTTCAATTGGCAAGTTTCGTAT
ATTCTTTGAAAATTCGCAAAATATTCTCAAACACTACAAACCCCAAATCTCAAACGCGACCATAG
CAGTTTCATTTACTCGTATATATACAATCGTTAGAGTCATCAACTAAGGCTAAACACCCGCACGT
AGGGATCCATTTGGTCGTTCGGGGTGTCTTGAGCCGGCGCAGGGGCCATCGTACGTGGCTGAGGC
GTAGCCTGGTGGTATTCGGGAGTTAACGGGTACCCTTGGCCCGCAGGCGGGTAGTTGCCTGGCAT
GGGCGGGGGATGGAAGGCCATGTTTGGCATGGGAGGTGCAAACTG
Right flanking sequence: Indices 13818 -- 14317
TCGATGCACGGGAAACGCTGCTTGATCGTAGCTGAGCGTCTGGTCCGGACCTGGGGCCAAAGGAG
CCATTCCAGGCCCCATTCCAGGCCCCATTGGAGGCACTCCTGGACCAGCCATGGCGTAGTATGCG
TTATCAAGGGGTTGAGTTGTGGGTTGAGTTGTGGGTTGAGTTGTGGGTTGAGTAGTGGGTTGAGT
TGTGGGGTGTCCAGGCAAGCTGGTCTGAGTCTCTGGTTTCGGGTTTTTGCGGGGACGTCCGCGTC
GTTCAGGCACCAAGAGTCCTGTTTTCGCGTCGTAGCGGTGGCCCTTGGGCGGTTTGGGCCGCGTG
GGGTCCACCTCGCGTTTCGCACGCTTCTTGGCTGGCTGGTTGGGTAGGTTCGTGGGGGCGGGAGC
AAGCGGAGCCATGGGTGGAGCGGGTGTCGTAGGGAACACACCAGCACCAGGAACAGATCCAGGAA
GGGAGCCGGGAAAAGAGCCAGGAAGAGAGCCGGGAAGAGAGCCGG
Found at i:13830 original size:30 final size:30
Alignment explanation
Indices: 13768--13831 Score: 74
Period size: 30 Copynumber: 2.1 Consensus size: 30
13758 CGGGGGCTCA
* * * *
13768 GGAAGACCAGCACCGCCCATGGGGGGCTCG
1 GGAAGACCAGAACCGCCCATGCGAGGCACG
* *
13798 GGAAGACCAGAACCGCCCATTCGATGCACG
1 GGAAGACCAGAACCGCCCATGCGAGGCACG
13828 GGAA
1 GGAA
13832 ACGCTGCTTG
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.27, C:0.31, G:0.34, T:0.08
Consensus pattern (30 bp):
GGAAGACCAGAACCGCCCATGCGAGGCACG
Left flanking sequence: Indices 13268 -- 13767
ATATTCTTGAGTATGGTGGCTTCTCTGGAACGTTGTCCCCATTGTTAGATATATGGATATCGTCT
CTCGCATCATCTGTTTGCAAGTTCACGAATCTCCTTCTTTGTTTTCTTTACAATCTGGATCCCCT
TGCCTGTATTCGAACTCGGGACCAATGCTTCAATTGGCAAGTTTCGTATATTCTTTGAAAATTCG
CAAAATATTCTCAAACACTACAAACCCCAAATCTCAAACGCGACCATAGCAGTTTCATTTACTCG
TATATATACAATCGTTAGAGTCATCAACTAAGGCTAAACACCCGCACGTAGGGATCCATTTGGTC
GTTCGGGGTGTCTTGAGCCGGCGCAGGGGCCATCGTACGTGGCTGAGGCGTAGCCTGGTGGTATT
CGGGAGTTAACGGGTACCCTTGGCCCGCAGGCGGGTAGTTGCCTGGCATGGGCGGGGGATGGAAG
GCCATGTTTGGCATGGGAGGTGCAAACTGGCCCATCGGGGGCTCA
Right flanking sequence: Indices 13832 -- 14331
ACGCTGCTTGATCGTAGCTGAGCGTCTGGTCCGGACCTGGGGCCAAAGGAGCCATTCCAGGCCCC
ATTCCAGGCCCCATTGGAGGCACTCCTGGACCAGCCATGGCGTAGTATGCGTTATCAAGGGGTTG
AGTTGTGGGTTGAGTTGTGGGTTGAGTTGTGGGTTGAGTAGTGGGTTGAGTTGTGGGGTGTCCAG
GCAAGCTGGTCTGAGTCTCTGGTTTCGGGTTTTTGCGGGGACGTCCGCGTCGTTCAGGCACCAAG
AGTCCTGTTTTCGCGTCGTAGCGGTGGCCCTTGGGCGGTTTGGGCCGCGTGGGGTCCACCTCGCG
TTTCGCACGCTTCTTGGCTGGCTGGTTGGGTAGGTTCGTGGGGGCGGGAGCAAGCGGAGCCATGG
GTGGAGCGGGTGTCGTAGGGAACACACCAGCACCAGGAACAGATCCAGGAAGGGAGCCGGGAAAA
GAGCCAGGAAGAGAGCCGGGAAGAGAGCCGGGAAGAGAGCCGGGA
Found at i:13917 original size:12 final size:12
Alignment explanation
Indices: 13883--13911 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
13873 GCCAAAGGAG
13883 CCATTCCAGGCC
1 CCATTCCAGGCC
13895 CCATTCCAGGCC
1 CCATTCCAGGCC
13907 CCATT
1 CCATT
13912 GGAGGCACTC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.17, C:0.48, G:0.14, T:0.21
Consensus pattern (12 bp):
CCATTCCAGGCC
Left flanking sequence: Indices 13383 -- 13882
CAATCTGGATCCCCTTGCCTGTATTCGAACTCGGGACCAATGCTTCAATTGGCAAGTTTCGTATA
TTCTTTGAAAATTCGCAAAATATTCTCAAACACTACAAACCCCAAATCTCAAACGCGACCATAGC
AGTTTCATTTACTCGTATATATACAATCGTTAGAGTCATCAACTAAGGCTAAACACCCGCACGTA
GGGATCCATTTGGTCGTTCGGGGTGTCTTGAGCCGGCGCAGGGGCCATCGTACGTGGCTGAGGCG
TAGCCTGGTGGTATTCGGGAGTTAACGGGTACCCTTGGCCCGCAGGCGGGTAGTTGCCTGGCATG
GGCGGGGGATGGAAGGCCATGTTTGGCATGGGAGGTGCAAACTGGCCCATCGGGGGCTCAGGAAG
ACCAGCACCGCCCATGGGGGGCTCGGGAAGACCAGAACCGCCCATTCGATGCACGGGAAACGCTG
CTTGATCGTAGCTGAGCGTCTGGTCCGGACCTGGGGCCAAAGGAG
Right flanking sequence: Indices 13912 -- 14411
GGAGGCACTCCTGGACCAGCCATGGCGTAGTATGCGTTATCAAGGGGTTGAGTTGTGGGTTGAGT
TGTGGGTTGAGTTGTGGGTTGAGTAGTGGGTTGAGTTGTGGGGTGTCCAGGCAAGCTGGTCTGAG
TCTCTGGTTTCGGGTTTTTGCGGGGACGTCCGCGTCGTTCAGGCACCAAGAGTCCTGTTTTCGCG
TCGTAGCGGTGGCCCTTGGGCGGTTTGGGCCGCGTGGGGTCCACCTCGCGTTTCGCACGCTTCTT
GGCTGGCTGGTTGGGTAGGTTCGTGGGGGCGGGAGCAAGCGGAGCCATGGGTGGAGCGGGTGTCG
TAGGGAACACACCAGCACCAGGAACAGATCCAGGAAGGGAGCCGGGAAAAGAGCCAGGAAGAGAG
CCGGGAAGAGAGCCGGGAAGAGAGCCGGGAACAGAGCCAGGAACAGAGCCAGCAGAGCCTGGTAC
AAACCCTGCTCCAGACACAGAGTCTGGCCCAAAGCCACCAGAAAT
Found at i:13973 original size:12 final size:12
Alignment explanation
Indices: 13956--14018 Score: 117
Period size: 12 Copynumber: 5.2 Consensus size: 12
13946 CGTTATCAAG
13956 GGGTTGAGTTGT
1 GGGTTGAGTTGT
13968 GGGTTGAGTTGT
1 GGGTTGAGTTGT
13980 GGGTTGAGTTGT
1 GGGTTGAGTTGT
*
13992 GGGTTGAGTAGT
1 GGGTTGAGTTGT
14004 GGGTTGAGTTGT
1 GGGTTGAGTTGT
14016 GGG
1 GGG
14019 GTGTCCAGGC
Statistics
Matches: 49, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 49 1.00
ACGTcount: A:0.10, C:0.00, G:0.52, T:0.38
Consensus pattern (12 bp):
GGGTTGAGTTGT
Left flanking sequence: Indices 13456 -- 13955
AAATTCGCAAAATATTCTCAAACACTACAAACCCCAAATCTCAAACGCGACCATAGCAGTTTCAT
TTACTCGTATATATACAATCGTTAGAGTCATCAACTAAGGCTAAACACCCGCACGTAGGGATCCA
TTTGGTCGTTCGGGGTGTCTTGAGCCGGCGCAGGGGCCATCGTACGTGGCTGAGGCGTAGCCTGG
TGGTATTCGGGAGTTAACGGGTACCCTTGGCCCGCAGGCGGGTAGTTGCCTGGCATGGGCGGGGG
ATGGAAGGCCATGTTTGGCATGGGAGGTGCAAACTGGCCCATCGGGGGCTCAGGAAGACCAGCAC
CGCCCATGGGGGGCTCGGGAAGACCAGAACCGCCCATTCGATGCACGGGAAACGCTGCTTGATCG
TAGCTGAGCGTCTGGTCCGGACCTGGGGCCAAAGGAGCCATTCCAGGCCCCATTCCAGGCCCCAT
TGGAGGCACTCCTGGACCAGCCATGGCGTAGTATGCGTTATCAAG
Right flanking sequence: Indices 14019 -- 14518
GTGTCCAGGCAAGCTGGTCTGAGTCTCTGGTTTCGGGTTTTTGCGGGGACGTCCGCGTCGTTCAG
GCACCAAGAGTCCTGTTTTCGCGTCGTAGCGGTGGCCCTTGGGCGGTTTGGGCCGCGTGGGGTCC
ACCTCGCGTTTCGCACGCTTCTTGGCTGGCTGGTTGGGTAGGTTCGTGGGGGCGGGAGCAAGCGG
AGCCATGGGTGGAGCGGGTGTCGTAGGGAACACACCAGCACCAGGAACAGATCCAGGAAGGGAGC
CGGGAAAAGAGCCAGGAAGAGAGCCGGGAAGAGAGCCGGGAAGAGAGCCGGGAACAGAGCCAGGA
ACAGAGCCAGCAGAGCCTGGTACAAACCCTGCTCCAGACACAGAGTCTGGCCCAAAGCCACCAGA
AATAGCCATGTTTCCAGGCACCAACCCAGCCCCTGGCTCGAGTTTCACCTCCTGATTCCCCTCCT
CTTGTTTAAACTCCTGCTTCGCCTGCTTTACCCCTTGCTCCACCT
Found at i:14271 original size:12 final size:12
Alignment explanation
Indices: 14254--14353 Score: 110
Period size: 12 Copynumber: 8.3 Consensus size: 12
14244 CACACCAGCA
* *
14254 CCAGGAACAGAT
1 CCAGGAAGAGAG
*
14266 CCAGGAAGGGAG
1 CCAGGAAGAGAG
* *
14278 CCGGGAAAAGAG
1 CCAGGAAGAGAG
14290 CCAGGAAGAGAG
1 CCAGGAAGAGAG
*
14302 CCGGGAAGAGAG
1 CCAGGAAGAGAG
*
14314 CCGGGAAGAGAG
1 CCAGGAAGAGAG
* *
14326 CCGGGAACAGAG
1 CCAGGAAGAGAG
*
14338 CCAGGAACAGAG
1 CCAGGAAGAGAG
14350 CCAG
1 CCAG
14354 CAGAGCCTGG
Statistics
Matches: 77, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
12 77 1.00
ACGTcount: A:0.37, C:0.21, G:0.41, T:0.01
Consensus pattern (12 bp):
CCAGGAAGAGAG
Left flanking sequence: Indices 13754 -- 14253
CCATCGGGGGCTCAGGAAGACCAGCACCGCCCATGGGGGGCTCGGGAAGACCAGAACCGCCCATT
CGATGCACGGGAAACGCTGCTTGATCGTAGCTGAGCGTCTGGTCCGGACCTGGGGCCAAAGGAGC
CATTCCAGGCCCCATTCCAGGCCCCATTGGAGGCACTCCTGGACCAGCCATGGCGTAGTATGCGT
TATCAAGGGGTTGAGTTGTGGGTTGAGTTGTGGGTTGAGTTGTGGGTTGAGTAGTGGGTTGAGTT
GTGGGGTGTCCAGGCAAGCTGGTCTGAGTCTCTGGTTTCGGGTTTTTGCGGGGACGTCCGCGTCG
TTCAGGCACCAAGAGTCCTGTTTTCGCGTCGTAGCGGTGGCCCTTGGGCGGTTTGGGCCGCGTGG
GGTCCACCTCGCGTTTCGCACGCTTCTTGGCTGGCTGGTTGGGTAGGTTCGTGGGGGCGGGAGCA
AGCGGAGCCATGGGTGGAGCGGGTGTCGTAGGGAACACACCAGCA
Right flanking sequence: Indices 14354 -- 14853
CAGAGCCTGGTACAAACCCTGCTCCAGACACAGAGTCTGGCCCAAAGCCACCAGAAATAGCCATG
TTTCCAGGCACCAACCCAGCCCCTGGCTCGAGTTTCACCTCCTGATTCCCCTCCTCTTGTTTAAA
CTCCTGCTTCGCCTGCTTTACCCCTTGCTCCACCTCCTTCTCCTGCTTCTTCTTCTTCTCGAACG
CCTTCAGGGCCGCCTCACACACCTCCACCTCGTGCGACGGGTACACGCCCACCACCTGGTCCGCG
CCCACCTCCACCACGTCCTCCAACTGCGGATACACCGCCACAAGCACCAGCGCCTCGGGCCGCGT
CTCCACCACCCGGCCCAAGAACGACCCCTTGCCAAACGTGCACTGGACCCACGCCCGCTGGCCCT
TGGCCACCGCCACGGGAGCCACCTTGTGGTGGTACTTGCACTTGGCCTCGCCCTCGGCAAGCGCC
ACCTGGTCCACGAGCGCACACGGCGCGTGGTAGCTCCGGGTGCAC
Found at i:14293 original size:24 final size:24
Alignment explanation
Indices: 14257--14351 Score: 136
Period size: 24 Copynumber: 4.0 Consensus size: 24
14247 ACCAGCACCA
* *
14257 GGAACAGATCCAGGAAGGGAGCCG
1 GGAACAGAGCCAGGAAGAGAGCCG
*
14281 GGAAAAGAGCCAGGAAGAGAGCCG
1 GGAACAGAGCCAGGAAGAGAGCCG
* *
14305 GGAAGAGAGCCGGGAAGAGAGCCG
1 GGAACAGAGCCAGGAAGAGAGCCG
*
14329 GGAACAGAGCCAGGAACAGAGCC
1 GGAACAGAGCCAGGAAGAGAGCC
14352 AGCAGAGCCT
Statistics
Matches: 63, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 63 1.00
ACGTcount: A:0.37, C:0.20, G:0.42, T:0.01
Consensus pattern (24 bp):
GGAACAGAGCCAGGAAGAGAGCCG
Left flanking sequence: Indices 13757 -- 14256
TCGGGGGCTCAGGAAGACCAGCACCGCCCATGGGGGGCTCGGGAAGACCAGAACCGCCCATTCGA
TGCACGGGAAACGCTGCTTGATCGTAGCTGAGCGTCTGGTCCGGACCTGGGGCCAAAGGAGCCAT
TCCAGGCCCCATTCCAGGCCCCATTGGAGGCACTCCTGGACCAGCCATGGCGTAGTATGCGTTAT
CAAGGGGTTGAGTTGTGGGTTGAGTTGTGGGTTGAGTTGTGGGTTGAGTAGTGGGTTGAGTTGTG
GGGTGTCCAGGCAAGCTGGTCTGAGTCTCTGGTTTCGGGTTTTTGCGGGGACGTCCGCGTCGTTC
AGGCACCAAGAGTCCTGTTTTCGCGTCGTAGCGGTGGCCCTTGGGCGGTTTGGGCCGCGTGGGGT
CCACCTCGCGTTTCGCACGCTTCTTGGCTGGCTGGTTGGGTAGGTTCGTGGGGGCGGGAGCAAGC
GGAGCCATGGGTGGAGCGGGTGTCGTAGGGAACACACCAGCACCA
Right flanking sequence: Indices 14352 -- 14851
AGCAGAGCCTGGTACAAACCCTGCTCCAGACACAGAGTCTGGCCCAAAGCCACCAGAAATAGCCA
TGTTTCCAGGCACCAACCCAGCCCCTGGCTCGAGTTTCACCTCCTGATTCCCCTCCTCTTGTTTA
AACTCCTGCTTCGCCTGCTTTACCCCTTGCTCCACCTCCTTCTCCTGCTTCTTCTTCTTCTCGAA
CGCCTTCAGGGCCGCCTCACACACCTCCACCTCGTGCGACGGGTACACGCCCACCACCTGGTCCG
CGCCCACCTCCACCACGTCCTCCAACTGCGGATACACCGCCACAAGCACCAGCGCCTCGGGCCGC
GTCTCCACCACCCGGCCCAAGAACGACCCCTTGCCAAACGTGCACTGGACCCACGCCCGCTGGCC
CTTGGCCACCGCCACGGGAGCCACCTTGTGGTGGTACTTGCACTTGGCCTCGCCCTCGGCAAGCG
CCACCTGGTCCACGAGCGCACACGGCGCGTGGTAGCTCCGGGTGC
Found at i:14294 original size:36 final size:36
Alignment explanation
Indices: 14254--14351 Score: 133
Period size: 36 Copynumber: 2.7 Consensus size: 36
14244 CACACCAGCA
* *
14254 CCAGGAACAGATCCAGGAAGGGAGCCGGGAAAAGAG
1 CCAGGAACAGAGCCAGGAAGAGAGCCGGGAAAAGAG
* * *
14290 CCAGGAAGAGAGCCGGGAAGAGAGCCGGGAAGAGAG
1 CCAGGAACAGAGCCAGGAAGAGAGCCGGGAAAAGAG
* *
14326 CCGGGAACAGAGCCAGGAACAGAGCC
1 CCAGGAACAGAGCCAGGAAGAGAGCC
14352 AGCAGAGCCT
Statistics
Matches: 53, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
36 53 1.00
ACGTcount: A:0.37, C:0.21, G:0.41, T:0.01
Consensus pattern (36 bp):
CCAGGAACAGAGCCAGGAAGAGAGCCGGGAAAAGAG
Left flanking sequence: Indices 13754 -- 14253
CCATCGGGGGCTCAGGAAGACCAGCACCGCCCATGGGGGGCTCGGGAAGACCAGAACCGCCCATT
CGATGCACGGGAAACGCTGCTTGATCGTAGCTGAGCGTCTGGTCCGGACCTGGGGCCAAAGGAGC
CATTCCAGGCCCCATTCCAGGCCCCATTGGAGGCACTCCTGGACCAGCCATGGCGTAGTATGCGT
TATCAAGGGGTTGAGTTGTGGGTTGAGTTGTGGGTTGAGTTGTGGGTTGAGTAGTGGGTTGAGTT
GTGGGGTGTCCAGGCAAGCTGGTCTGAGTCTCTGGTTTCGGGTTTTTGCGGGGACGTCCGCGTCG
TTCAGGCACCAAGAGTCCTGTTTTCGCGTCGTAGCGGTGGCCCTTGGGCGGTTTGGGCCGCGTGG
GGTCCACCTCGCGTTTCGCACGCTTCTTGGCTGGCTGGTTGGGTAGGTTCGTGGGGGCGGGAGCA
AGCGGAGCCATGGGTGGAGCGGGTGTCGTAGGGAACACACCAGCA
Right flanking sequence: Indices 14352 -- 14851
AGCAGAGCCTGGTACAAACCCTGCTCCAGACACAGAGTCTGGCCCAAAGCCACCAGAAATAGCCA
TGTTTCCAGGCACCAACCCAGCCCCTGGCTCGAGTTTCACCTCCTGATTCCCCTCCTCTTGTTTA
AACTCCTGCTTCGCCTGCTTTACCCCTTGCTCCACCTCCTTCTCCTGCTTCTTCTTCTTCTCGAA
CGCCTTCAGGGCCGCCTCACACACCTCCACCTCGTGCGACGGGTACACGCCCACCACCTGGTCCG
CGCCCACCTCCACCACGTCCTCCAACTGCGGATACACCGCCACAAGCACCAGCGCCTCGGGCCGC
GTCTCCACCACCCGGCCCAAGAACGACCCCTTGCCAAACGTGCACTGGACCCACGCCCGCTGGCC
CTTGGCCACCGCCACGGGAGCCACCTTGTGGTGGTACTTGCACTTGGCCTCGCCCTCGGCAAGCG
CCACCTGGTCCACGAGCGCACACGGCGCGTGGTAGCTCCGGGTGC
Found at i:15172 original size:9 final size:9
Alignment explanation
Indices: 15158--15188 Score: 62
Period size: 9 Copynumber: 3.4 Consensus size: 9
15148 GGCCTGGCCA
15158 CCTCTTTCG
1 CCTCTTTCG
15167 CCTCTTTCG
1 CCTCTTTCG
15176 CCTCTTTCG
1 CCTCTTTCG
15185 CCTC
1 CCTC
15189 CTCCACCTCC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 22 1.00
ACGTcount: A:0.00, C:0.48, G:0.10, T:0.42
Consensus pattern (9 bp):
CCTCTTTCG
Left flanking sequence: Indices 14658 -- 15157
CACCAGCGCCTCGGGCCGCGTCTCCACCACCCGGCCCAAGAACGACCCCTTGCCAAACGTGCACT
GGACCCACGCCCGCTGGCCCTTGGCCACCGCCACGGGAGCCACCTTGTGGTGGTACTTGCACTTG
GCCTCGCCCTCGGCAAGCGCCACCTGGTCCACGAGCGCACACGGCGCGTGGTAGCTCCGGGTGCA
CTTGGGATGGCTACACTGGAAACAGGGCCCGGGCTGCTTGCACACCGTGCAGTTGAGCTTGCGCT
GGGCACGGGTCACCTCCTCGAGCCCGCGAACAGTGCCGTCTGCGACGGAGACCTGCTCGGGGTAC
ATGGTCGCGCACACACGGTGGCAGAACTTGGAGCCCTGCGCCGTGGGCACCAACTCAAACAACGA
GTCGGTGGCCAACGGAGTGCCGCACACCGAGAGCCAGCACAACTGGCACTCGCGGGGCCCTGTTG
AGACCACTCGTTTCGCATCTCTGCGCTTTTTGAGCGGCCTGGCCA
Right flanking sequence: Indices 15189 -- 15688
CTCCACCTCCTCGGGCGACTCGGGCGGCGTCAGGTACTCGTAGGGAATCCCCTTGAACTTGCACC
ACAACTGGCGCACGTTGATCCCCACCGCGTCCGCGATACACTCGCACTTGTGGGTCTTTTCGGCG
ATGGGGAACCAGTCGTCGAGCGCAAAGTTGACCAGCTCCGCCAAGTTGTACCCGTAGTTGAACCC
AGCGTGGTACCCGTAGGGGTAGGTGATGACAAACTCGCCCTCGTGGTGGGTGATGTGGTTGACGG
GGATGTCGTGCTTGGCCAAGTACTGCGGCAGCACCATAAACGTCTTGTGGCGCAAAAACTCGGGG
CACTGGCGGTACTCGTCGGCAAACTCCTCCTTGAGCACCTCGAAGAACCGCTGGTGGTGCGCCTG
GGGGATCAGATACCACTGCTTGGGGGCTCCAAAGTGGATGTAGTTGATCAGATACAAGTCCTGGT
CCTCCAAGTGCCAGGCAAACGTCGCCTTCCACAACCCAGCATACA
Found at i:15197 original size:18 final size:18
Alignment explanation
Indices: 15155--15197 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
15145 AGCGGCCTGG
*
15155 CCACCTCTTTCGCCTCTT
1 CCACCTCTTTCGCCTCCT
* *
15173 TCGCCTCTTTCGCCTCCT
1 CCACCTCTTTCGCCTCCT
15191 CCACCTC
1 CCACCTC
15198 CTCGGGCGAC
Statistics
Matches: 20, Mismatches: 5, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.05, C:0.53, G:0.07, T:0.35
Consensus pattern (18 bp):
CCACCTCTTTCGCCTCCT
Left flanking sequence: Indices 14655 -- 15154
AAGCACCAGCGCCTCGGGCCGCGTCTCCACCACCCGGCCCAAGAACGACCCCTTGCCAAACGTGC
ACTGGACCCACGCCCGCTGGCCCTTGGCCACCGCCACGGGAGCCACCTTGTGGTGGTACTTGCAC
TTGGCCTCGCCCTCGGCAAGCGCCACCTGGTCCACGAGCGCACACGGCGCGTGGTAGCTCCGGGT
GCACTTGGGATGGCTACACTGGAAACAGGGCCCGGGCTGCTTGCACACCGTGCAGTTGAGCTTGC
GCTGGGCACGGGTCACCTCCTCGAGCCCGCGAACAGTGCCGTCTGCGACGGAGACCTGCTCGGGG
TACATGGTCGCGCACACACGGTGGCAGAACTTGGAGCCCTGCGCCGTGGGCACCAACTCAAACAA
CGAGTCGGTGGCCAACGGAGTGCCGCACACCGAGAGCCAGCACAACTGGCACTCGCGGGGCCCTG
TTGAGACCACTCGTTTCGCATCTCTGCGCTTTTTGAGCGGCCTGG
Right flanking sequence: Indices 15198 -- 15697
CTCGGGCGACTCGGGCGGCGTCAGGTACTCGTAGGGAATCCCCTTGAACTTGCACCACAACTGGC
GCACGTTGATCCCCACCGCGTCCGCGATACACTCGCACTTGTGGGTCTTTTCGGCGATGGGGAAC
CAGTCGTCGAGCGCAAAGTTGACCAGCTCCGCCAAGTTGTACCCGTAGTTGAACCCAGCGTGGTA
CCCGTAGGGGTAGGTGATGACAAACTCGCCCTCGTGGTGGGTGATGTGGTTGACGGGGATGTCGT
GCTTGGCCAAGTACTGCGGCAGCACCATAAACGTCTTGTGGCGCAAAAACTCGGGGCACTGGCGG
TACTCGTCGGCAAACTCCTCCTTGAGCACCTCGAAGAACCGCTGGTGGTGCGCCTGGGGGATCAG
ATACCACTGCTTGGGGGCTCCAAAGTGGATGTAGTTGATCAGATACAAGTCCTGGTCCTCCAAGT
GCCAGGCAAACGTCGCCTTCCACAACCCAGCATACAAATAGGCGT
Found at i:16467 original size:20 final size:21
Alignment explanation
Indices: 16430--16471 Score: 68
Period size: 20 Copynumber: 2.0 Consensus size: 21
16420 TGGAGGCAAT
*
16430 AGGGGTAGGGGTGGTGGAGGC
1 AGGGGTAGGCGTGGTGGAGGC
16451 AGGGGTAGGCG-GGTGGAGGC
1 AGGGGTAGGCGTGGTGGAGGC
16471 A
1 A
16472 CGGTTTGGTC
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
20 10 0.50
21 10 0.50
ACGTcount: A:0.17, C:0.07, G:0.64, T:0.12
Consensus pattern (21 bp):
AGGGGTAGGCGTGGTGGAGGC
Left flanking sequence: Indices 15930 -- 16429
CTGGTCCATCTGCTCAATCGCCAGCGGGCGGGCCTCGGGCTCCTTTATTTTACTCTTTGGAGGCT
GGAAGTTCAGCTGGGCACTGGTGTGTTTCCACTGCCAGATGTTGTACTTGCGGCCGCGCTCTACG
TTCTGCTGGGCATACACCCCCAGCGAACACAGGTTGATGTGCTGGACAATGGGGTTCTTGATGGT
GACGGCGTCCAAGTTGTCGCGGGTGTACACCCGTTGCACTTTTCGCAACCATTCGCGCGGAGGCA
CCACTTTCACGATCCCCAGCTCCATCCCGTAGCGGTTGATGGCCTTGTTGAAGCGGTAGAAGTCG
GCGAACTCCAGAGCCGAGGGGTAGAACACGGGCACTCCCCCCACGTACTCCCGTGGAGCAACACT
GAGGGGTCTGGTATCGAACATCGTATAGGGTTTTGATGGGTGGCCTGACCGGTGAAATGTGTCAG
TGCGCGTGGTGTATACAGGACGGGGGAACGGTAGGTGGAGGCAAT
Right flanking sequence: Indices 16472 -- 16971
CGGTTTGGTCGGGGAAACTGGGGGAGATGTCACGGTGGCGCGTTTGTGGCGGTTGTTTGTTTTGT
AAACGTACCTGCTCCACCGTTGTGACCTTGCCGGATCGGGCTAAGCGAGGGATGGTAGCGCCGAG
GAAAATCTGGGGTAGTGACCGGGTAGGGGTGAGAAGCAATTGGGTTGCGGTGGTCACGGGTAGGC
TAATGTAAGGGGATTTTGGTGTAGCAATTGTCCACGTTCGGTGACTACGGTAGTCGGTTCAAGTT
GGTCATGTTGGTTCAATTTGGTTTAGACGGGTATCAACAAGGGATGGATACGAGTAGTGTAACAT
CAGACGATAGCAACCTCTACCACAACGTACACACACTGGACACACCATGTACACACACTGGACAC
ACTCTACATACTCCACATACTCCACACTCTACATACTCCACACTCTACACACTCTACACTCTACA
CTCCACACTCATTCTTCCCCAACTGTCGTCCCTACTTCTCGCCCA
Found at i:16839 original size:11 final size:11
Alignment explanation
Indices: 16825--16863 Score: 53
Period size: 11 Copynumber: 3.5 Consensus size: 11
16815 ACCACAACGT
16825 ACACACACTGG
1 ACACACACTGG
*
16836 ACACAC-CATGT
1 ACACACAC-TGG
16847 ACACACACTGG
1 ACACACACTGG
16858 ACACAC
1 ACACAC
16864 TCTACATACT
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
10 1 0.04
11 22 0.92
12 1 0.04
ACGTcount: A:0.38, C:0.38, G:0.13, T:0.10
Consensus pattern (11 bp):
ACACACACTGG
Left flanking sequence: Indices 16325 -- 16824
GTCTGGTATCGAACATCGTATAGGGTTTTGATGGGTGGCCTGACCGGTGAAATGTGTCAGTGCGC
GTGGTGTATACAGGACGGGGGAACGGTAGGTGGAGGCAATAGGGGTAGGGGTGGTGGAGGCAGGG
GTAGGCGGGTGGAGGCACGGTTTGGTCGGGGAAACTGGGGGAGATGTCACGGTGGCGCGTTTGTG
GCGGTTGTTTGTTTTGTAAACGTACCTGCTCCACCGTTGTGACCTTGCCGGATCGGGCTAAGCGA
GGGATGGTAGCGCCGAGGAAAATCTGGGGTAGTGACCGGGTAGGGGTGAGAAGCAATTGGGTTGC
GGTGGTCACGGGTAGGCTAATGTAAGGGGATTTTGGTGTAGCAATTGTCCACGTTCGGTGACTAC
GGTAGTCGGTTCAAGTTGGTCATGTTGGTTCAATTTGGTTTAGACGGGTATCAACAAGGGATGGA
TACGAGTAGTGTAACATCAGACGATAGCAACCTCTACCACAACGT
Right flanking sequence: Indices 16864 -- 17363
TCTACATACTCCACATACTCCACACTCTACATACTCCACACTCTACACACTCTACACTCTACACT
CCACACTCATTCTTCCCCAACTGTCGTCCCTACTTCTCGCCCAACTCGCTCCAGACGCGTCTCAC
CTTCGTATTTCCACCCCTTTTGGTCACCACCGCGAATCCGGGTGAATGCACATGACCACCCTGTT
ACTGTGAACACACCCGTGCCCCTTTCTCCGCACCGAGCCACCCGCCAACCCGCTACTGATCAGGG
CAAACTCCGACCCGTAACGGGCATGGCTCGATTACGTAAGCGAACCGTTCACAGCGACCGTGGTC
GGCAAACGTCCACTATACCACCACTATAGCACCTAAAAGACACTAGATCGAGCCTCATATACCAC
CTTCTTTCACCCCCCACCCTTTTCTTCCCCCATTTCCCGTCTCTTCCCGTCTCGTCCACCTACTC
GTCCGTCTCATCCCAAGCCCCGATTACCCCTCGCACTACCAAAAG
Found at i:16874 original size:9 final size:9
Alignment explanation
Indices: 16858--16920 Score: 62
Period size: 9 Copynumber: 7.4 Consensus size: 9
16848 CACACACTGG
16858 ACACACTCT
1 ACACACTCT
* *
16867 ACATACTCC
1 ACACACTCT
*
16876 ACATACTC-
1 ACACACTCT
16884 -CACACTCT
1 ACACACTCT
*
16892 ACATACTC-
1 ACACACTCT
16900 -CACACTCT
1 ACACACTCT
16908 ACACACTCT
1 ACACACTCT
16917 ACAC
1 ACAC
16921 TCTACACTCC
Statistics
Matches: 45, Mismatches: 5, Indels: 8
0.78 0.09 0.14
Matches are distributed among these distances:
7 12 0.27
9 33 0.73
ACGTcount: A:0.33, C:0.44, G:0.00, T:0.22
Consensus pattern (9 bp):
ACACACTCT
Left flanking sequence: Indices 16358 -- 16857
GGTGGCCTGACCGGTGAAATGTGTCAGTGCGCGTGGTGTATACAGGACGGGGGAACGGTAGGTGG
AGGCAATAGGGGTAGGGGTGGTGGAGGCAGGGGTAGGCGGGTGGAGGCACGGTTTGGTCGGGGAA
ACTGGGGGAGATGTCACGGTGGCGCGTTTGTGGCGGTTGTTTGTTTTGTAAACGTACCTGCTCCA
CCGTTGTGACCTTGCCGGATCGGGCTAAGCGAGGGATGGTAGCGCCGAGGAAAATCTGGGGTAGT
GACCGGGTAGGGGTGAGAAGCAATTGGGTTGCGGTGGTCACGGGTAGGCTAATGTAAGGGGATTT
TGGTGTAGCAATTGTCCACGTTCGGTGACTACGGTAGTCGGTTCAAGTTGGTCATGTTGGTTCAA
TTTGGTTTAGACGGGTATCAACAAGGGATGGATACGAGTAGTGTAACATCAGACGATAGCAACCT
CTACCACAACGTACACACACTGGACACACCATGTACACACACTGG
Right flanking sequence: Indices 16921 -- 17420
TCTACACTCCACACTCATTCTTCCCCAACTGTCGTCCCTACTTCTCGCCCAACTCGCTCCAGACG
CGTCTCACCTTCGTATTTCCACCCCTTTTGGTCACCACCGCGAATCCGGGTGAATGCACATGACC
ACCCTGTTACTGTGAACACACCCGTGCCCCTTTCTCCGCACCGAGCCACCCGCCAACCCGCTACT
GATCAGGGCAAACTCCGACCCGTAACGGGCATGGCTCGATTACGTAAGCGAACCGTTCACAGCGA
CCGTGGTCGGCAAACGTCCACTATACCACCACTATAGCACCTAAAAGACACTAGATCGAGCCTCA
TATACCACCTTCTTTCACCCCCCACCCTTTTCTTCCCCCATTTCCCGTCTCTTCCCGTCTCGTCC
ACCTACTCGTCCGTCTCATCCCAAGCCCCGATTACCCCTCGCACTACCAAAAGCAAACCAAGCGA
AGGAAGTCCACTCCCAAAAAGCACCGCGCAGAGCCCCGACCGCCT
Found at i:16887 original size:25 final size:25
Alignment explanation
Indices: 16858--16919 Score: 99
Period size: 25 Copynumber: 2.5 Consensus size: 25
16848 CACACACTGG
16858 ACACACTCTACATACTCCACA-TACT
1 ACACACTCTACATACTCCACACT-CT
*
16883 CCACACTCTACATACTCCACACTCT
1 ACACACTCTACATACTCCACACTCT
16908 ACACACTCTACA
1 ACACACTCTACA
16920 CTCTACACTC
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
25 33 0.97
26 1 0.03
ACGTcount: A:0.34, C:0.44, G:0.00, T:0.23
Consensus pattern (25 bp):
ACACACTCTACATACTCCACACTCT
Left flanking sequence: Indices 16358 -- 16857
GGTGGCCTGACCGGTGAAATGTGTCAGTGCGCGTGGTGTATACAGGACGGGGGAACGGTAGGTGG
AGGCAATAGGGGTAGGGGTGGTGGAGGCAGGGGTAGGCGGGTGGAGGCACGGTTTGGTCGGGGAA
ACTGGGGGAGATGTCACGGTGGCGCGTTTGTGGCGGTTGTTTGTTTTGTAAACGTACCTGCTCCA
CCGTTGTGACCTTGCCGGATCGGGCTAAGCGAGGGATGGTAGCGCCGAGGAAAATCTGGGGTAGT
GACCGGGTAGGGGTGAGAAGCAATTGGGTTGCGGTGGTCACGGGTAGGCTAATGTAAGGGGATTT
TGGTGTAGCAATTGTCCACGTTCGGTGACTACGGTAGTCGGTTCAAGTTGGTCATGTTGGTTCAA
TTTGGTTTAGACGGGTATCAACAAGGGATGGATACGAGTAGTGTAACATCAGACGATAGCAACCT
CTACCACAACGTACACACACTGGACACACCATGTACACACACTGG
Right flanking sequence: Indices 16920 -- 17419
CTCTACACTCCACACTCATTCTTCCCCAACTGTCGTCCCTACTTCTCGCCCAACTCGCTCCAGAC
GCGTCTCACCTTCGTATTTCCACCCCTTTTGGTCACCACCGCGAATCCGGGTGAATGCACATGAC
CACCCTGTTACTGTGAACACACCCGTGCCCCTTTCTCCGCACCGAGCCACCCGCCAACCCGCTAC
TGATCAGGGCAAACTCCGACCCGTAACGGGCATGGCTCGATTACGTAAGCGAACCGTTCACAGCG
ACCGTGGTCGGCAAACGTCCACTATACCACCACTATAGCACCTAAAAGACACTAGATCGAGCCTC
ATATACCACCTTCTTTCACCCCCCACCCTTTTCTTCCCCCATTTCCCGTCTCTTCCCGTCTCGTC
CACCTACTCGTCCGTCTCATCCCAAGCCCCGATTACCCCTCGCACTACCAAAAGCAAACCAAGCG
AAGGAAGTCCACTCCCAAAAAGCACCGCGCAGAGCCCCGACCGCC
Found at i:16890 original size:16 final size:16
Alignment explanation
Indices: 16871--16936 Score: 91
Period size: 16 Copynumber: 4.2 Consensus size: 16
16861 CACTCTACAT
*
16871 ACTCCACATACTCCAC
1 ACTCTACATACTCCAC
16887 ACTCTACATACTCCAC
1 ACTCTACATACTCCAC
* *
16903 ACTCTACACACTCTAC
1 ACTCTACATACTCCAC
16919 ACTCTAC--ACTCCAC
1 ACTCTACATACTCCAC
16933 ACTC
1 ACTC
16937 ATTCTTCCCC
Statistics
Matches: 46, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
14 10 0.22
16 36 0.78
ACGTcount: A:0.30, C:0.47, G:0.00, T:0.23
Consensus pattern (16 bp):
ACTCTACATACTCCAC
Left flanking sequence: Indices 16371 -- 16870
GTGAAATGTGTCAGTGCGCGTGGTGTATACAGGACGGGGGAACGGTAGGTGGAGGCAATAGGGGT
AGGGGTGGTGGAGGCAGGGGTAGGCGGGTGGAGGCACGGTTTGGTCGGGGAAACTGGGGGAGATG
TCACGGTGGCGCGTTTGTGGCGGTTGTTTGTTTTGTAAACGTACCTGCTCCACCGTTGTGACCTT
GCCGGATCGGGCTAAGCGAGGGATGGTAGCGCCGAGGAAAATCTGGGGTAGTGACCGGGTAGGGG
TGAGAAGCAATTGGGTTGCGGTGGTCACGGGTAGGCTAATGTAAGGGGATTTTGGTGTAGCAATT
GTCCACGTTCGGTGACTACGGTAGTCGGTTCAAGTTGGTCATGTTGGTTCAATTTGGTTTAGACG
GGTATCAACAAGGGATGGATACGAGTAGTGTAACATCAGACGATAGCAACCTCTACCACAACGTA
CACACACTGGACACACCATGTACACACACTGGACACACTCTACAT
Right flanking sequence: Indices 16937 -- 17436
ATTCTTCCCCAACTGTCGTCCCTACTTCTCGCCCAACTCGCTCCAGACGCGTCTCACCTTCGTAT
TTCCACCCCTTTTGGTCACCACCGCGAATCCGGGTGAATGCACATGACCACCCTGTTACTGTGAA
CACACCCGTGCCCCTTTCTCCGCACCGAGCCACCCGCCAACCCGCTACTGATCAGGGCAAACTCC
GACCCGTAACGGGCATGGCTCGATTACGTAAGCGAACCGTTCACAGCGACCGTGGTCGGCAAACG
TCCACTATACCACCACTATAGCACCTAAAAGACACTAGATCGAGCCTCATATACCACCTTCTTTC
ACCCCCCACCCTTTTCTTCCCCCATTTCCCGTCTCTTCCCGTCTCGTCCACCTACTCGTCCGTCT
CATCCCAAGCCCCGATTACCCCTCGCACTACCAAAAGCAAACCAAGCGAAGGAAGTCCACTCCCA
AAAAGCACCGCGCAGAGCCCCGACCGCCTCCACTGGCCACCATTG
Found at i:16906 original size:7 final size:7
Alignment explanation
Indices: 16880--16936 Score: 51
Period size: 7 Copynumber: 7.6 Consensus size: 7
16870 TACTCCACAT
16880 ACTCCAC
1 ACTCCAC
*
16887 ACTCTACAT
1 ACTC--CAC
16896 ACTCCAC
1 ACTCCAC
16903 ACTCTACAC
1 ACTC--CAC
*
16912 ACTCTAC
1 ACTCCAC
*
16919 ACTCTAC
1 ACTCCAC
16926 ACTCCAC
1 ACTCCAC
16933 ACTC
1 ACTC
16937 ATTCTTCCCC
Statistics
Matches: 42, Mismatches: 4, Indels: 8
0.78 0.07 0.15
Matches are distributed among these distances:
7 29 0.69
9 13 0.31
ACGTcount: A:0.30, C:0.47, G:0.00, T:0.23
Consensus pattern (7 bp):
ACTCCAC
Left flanking sequence: Indices 16380 -- 16879
GTCAGTGCGCGTGGTGTATACAGGACGGGGGAACGGTAGGTGGAGGCAATAGGGGTAGGGGTGGT
GGAGGCAGGGGTAGGCGGGTGGAGGCACGGTTTGGTCGGGGAAACTGGGGGAGATGTCACGGTGG
CGCGTTTGTGGCGGTTGTTTGTTTTGTAAACGTACCTGCTCCACCGTTGTGACCTTGCCGGATCG
GGCTAAGCGAGGGATGGTAGCGCCGAGGAAAATCTGGGGTAGTGACCGGGTAGGGGTGAGAAGCA
ATTGGGTTGCGGTGGTCACGGGTAGGCTAATGTAAGGGGATTTTGGTGTAGCAATTGTCCACGTT
CGGTGACTACGGTAGTCGGTTCAAGTTGGTCATGTTGGTTCAATTTGGTTTAGACGGGTATCAAC
AAGGGATGGATACGAGTAGTGTAACATCAGACGATAGCAACCTCTACCACAACGTACACACACTG
GACACACCATGTACACACACTGGACACACTCTACATACTCCACAT
Right flanking sequence: Indices 16937 -- 17436
ATTCTTCCCCAACTGTCGTCCCTACTTCTCGCCCAACTCGCTCCAGACGCGTCTCACCTTCGTAT
TTCCACCCCTTTTGGTCACCACCGCGAATCCGGGTGAATGCACATGACCACCCTGTTACTGTGAA
CACACCCGTGCCCCTTTCTCCGCACCGAGCCACCCGCCAACCCGCTACTGATCAGGGCAAACTCC
GACCCGTAACGGGCATGGCTCGATTACGTAAGCGAACCGTTCACAGCGACCGTGGTCGGCAAACG
TCCACTATACCACCACTATAGCACCTAAAAGACACTAGATCGAGCCTCATATACCACCTTCTTTC
ACCCCCCACCCTTTTCTTCCCCCATTTCCCGTCTCTTCCCGTCTCGTCCACCTACTCGTCCGTCT
CATCCCAAGCCCCGATTACCCCTCGCACTACCAAAAGCAAACCAAGCGAAGGAAGTCCACTCCCA
AAAAGCACCGCGCAGAGCCCCGACCGCCTCCACTGGCCACCATTG
Found at i:18070 original size:17 final size:17
Alignment explanation
Indices: 18045--18152 Score: 105
Period size: 17 Copynumber: 6.4 Consensus size: 17
18035 ATTCAATACA
*
18045 AGAGGAGGTAGGATCAG
1 AGAGAAGGTAGGATCAG
*
18062 AGAGAAGGTAGGA-GAG
1 AGAGAAGGTAGGATCAG
*
18078 AG-GAAGGCT-GGGTCAG
1 AGAGAAGG-TAGGATCAG
* * *
18094 AGTGGAAGGTAAGATCAA
1 AG-AGAAGGTAGGATCAG
*
18112 AGAGGAAGGTAGGATTAG
1 AGA-GAAGGTAGGATCAG
18130 AGAGAAGGTAGGATCAG
1 AGAGAAGGTAGGATCAG
18147 AGAGAA
1 AGAGAA
18153 AGTAAGAGAG
Statistics
Matches: 73, Mismatches: 12, Indels: 12
0.75 0.12 0.12
Matches are distributed among these distances:
15 7 0.10
16 9 0.12
17 32 0.44
18 25 0.34
ACGTcount: A:0.40, C:0.05, G:0.44, T:0.12
Consensus pattern (17 bp):
AGAGAAGGTAGGATCAG
Left flanking sequence: Indices 17545 -- 18044
CCTGATTTTGACCATCGTCTTTTTGGGGATGGTGGGGTTGTGGGCATGGCACGGGTGGGTGGTTG
CCAAGATCATGTACTACCAGCCCTACGGGTCGTTGATAAACAACTTGATGTACGGCCCCGTGACC
TGGGTGGCCCATATGGGGGTTTCTTACCGGGTGGCAAAGTGGTTGAACGCCCGGTTGTTGGACGA
CAAGATCGAGGACGACTACAAGAAGTATATTTAGTGATGGTTTACGACTAATAAATGCATAATGA
TGGTAGAAGCGGTGATTGGGCGTGGTTGGGAGGCTACGGTGATGACGTTGATCTCACGTGATCAA
AAGTGGTGATGAATGAAGAGGAGGGTAGAATCAGAGAGAAGGTAGGAGAGAAGGGAGAGTTAGAA
GAGTGACTGGAGTTAGGGTCTTACTACTATCACACCTTCCCGACCTGCGTTAGAGGACTTGCTTT
CATCCAATTCCACCAGCTGGCTCCACACACAGCTAATTCAATACA
Right flanking sequence: Indices 18153 -- 18652
AGTAAGAGAGAAGGTAGGAGAGAAGGTAGGATCAGGGAGAAAGTAAGAGAGAAGGTAGGAGAGAA
GGTAGCATCACAGAAAGGCTAGACCAGAGAGGAAGGTAGGATCATGGAGATCCGCTAGTGTTCGT
GGTATACGGCGAATAGCCACCACTACCACGCTAAATTCTCCATTGCACAGAAGACTCGTACATTC
TTAAAGTCTGTCCATTTTCCCTGGTATCATTACTCATTAGTCATTAAATAAATAGGTAGGTAGTC
CAGCCTCCGCCTCCTACTGGCTGCTGGGCACCTGGACCTGGTGCTGGGTGATCTCCACCGTGCAC
AACTGGCCGATGATCGGCTCAAGCTCCTCGTCCTCGGAGTCGGACACCACCGACTCGTCCTTCGC
CACGGGACTGGCCTTGAACACGTGCTCGCCCCGGCTCCACTCGCCCTCGAACCCGTAGCCCGCGA
TCCGGCTGGTGTACTGCGGGAGAAGCTGGCTGGCCGGCTCGAGGG
Found at i:18118 original size:18 final size:17
Alignment explanation
Indices: 18098--18159 Score: 70
Period size: 17 Copynumber: 3.6 Consensus size: 17
18088 GGTCAGAGTG
*
18098 GAAGGTAAGATCAAAGA
1 GAAGGTAAGATCAGAGA
* *
18115 GGAAGGTAGGATTAGAGA
1 -GAAGGTAAGATCAGAGA
*
18133 GAAGGTAGGATCAGAGA
1 GAAGGTAAGATCAGAGA
*
18150 GAAAGTAAGA
1 GAAGGTAAGA
18160 GAGAAGGTAG
Statistics
Matches: 38, Mismatches: 6, Indels: 1
0.84 0.13 0.02
Matches are distributed among these distances:
17 24 0.63
18 14 0.37
ACGTcount: A:0.47, C:0.03, G:0.37, T:0.13
Consensus pattern (17 bp):
GAAGGTAAGATCAGAGA
Left flanking sequence: Indices 17598 -- 18097
GGTGGGTGGTTGCCAAGATCATGTACTACCAGCCCTACGGGTCGTTGATAAACAACTTGATGTAC
GGCCCCGTGACCTGGGTGGCCCATATGGGGGTTTCTTACCGGGTGGCAAAGTGGTTGAACGCCCG
GTTGTTGGACGACAAGATCGAGGACGACTACAAGAAGTATATTTAGTGATGGTTTACGACTAATA
AATGCATAATGATGGTAGAAGCGGTGATTGGGCGTGGTTGGGAGGCTACGGTGATGACGTTGATC
TCACGTGATCAAAAGTGGTGATGAATGAAGAGGAGGGTAGAATCAGAGAGAAGGTAGGAGAGAAG
GGAGAGTTAGAAGAGTGACTGGAGTTAGGGTCTTACTACTATCACACCTTCCCGACCTGCGTTAG
AGGACTTGCTTTCATCCAATTCCACCAGCTGGCTCCACACACAGCTAATTCAATACAAGAGGAGG
TAGGATCAGAGAGAAGGTAGGAGAGAGGAAGGCTGGGTCAGAGTG
Right flanking sequence: Indices 18160 -- 18659
GAGAAGGTAGGAGAGAAGGTAGGATCAGGGAGAAAGTAAGAGAGAAGGTAGGAGAGAAGGTAGCA
TCACAGAAAGGCTAGACCAGAGAGGAAGGTAGGATCATGGAGATCCGCTAGTGTTCGTGGTATAC
GGCGAATAGCCACCACTACCACGCTAAATTCTCCATTGCACAGAAGACTCGTACATTCTTAAAGT
CTGTCCATTTTCCCTGGTATCATTACTCATTAGTCATTAAATAAATAGGTAGGTAGTCCAGCCTC
CGCCTCCTACTGGCTGCTGGGCACCTGGACCTGGTGCTGGGTGATCTCCACCGTGCACAACTGGC
CGATGATCGGCTCAAGCTCCTCGTCCTCGGAGTCGGACACCACCGACTCGTCCTTCGCCACGGGA
CTGGCCTTGAACACGTGCTCGCCCCGGCTCCACTCGCCCTCGAACCCGTAGCCCGCGATCCGGCT
GGTGTACTGCGGGAGAAGCTGGCTGGCCGGCTCGAGGGTCGGAGA
Found at i:18174 original size:41 final size:41
Alignment explanation
Indices: 18129--18227 Score: 180
Period size: 41 Copynumber: 2.4 Consensus size: 41
18119 GGTAGGATTA
18129 GAGAGAAGGTAGGATCAGAGAGAAAGTAAGAGAGAAGGTAG
1 GAGAGAAGGTAGGATCAGAGAGAAAGTAAGAGAGAAGGTAG
*
18170 GAGAGAAGGTAGGATCAGGGAGAAAGTAAGAGAGAAGGTAG
1 GAGAGAAGGTAGGATCAGAGAGAAAGTAAGAGAGAAGGTAG
*
18211 GAGAGAAGGTAGCATCA
1 GAGAGAAGGTAGGATCA
18228 CAGAAAGGCT
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
41 56 1.00
ACGTcount: A:0.44, C:0.04, G:0.41, T:0.10
Consensus pattern (41 bp):
GAGAGAAGGTAGGATCAGAGAGAAAGTAAGAGAGAAGGTAG
Left flanking sequence: Indices 17629 -- 18128
GCCCTACGGGTCGTTGATAAACAACTTGATGTACGGCCCCGTGACCTGGGTGGCCCATATGGGGG
TTTCTTACCGGGTGGCAAAGTGGTTGAACGCCCGGTTGTTGGACGACAAGATCGAGGACGACTAC
AAGAAGTATATTTAGTGATGGTTTACGACTAATAAATGCATAATGATGGTAGAAGCGGTGATTGG
GCGTGGTTGGGAGGCTACGGTGATGACGTTGATCTCACGTGATCAAAAGTGGTGATGAATGAAGA
GGAGGGTAGAATCAGAGAGAAGGTAGGAGAGAAGGGAGAGTTAGAAGAGTGACTGGAGTTAGGGT
CTTACTACTATCACACCTTCCCGACCTGCGTTAGAGGACTTGCTTTCATCCAATTCCACCAGCTG
GCTCCACACACAGCTAATTCAATACAAGAGGAGGTAGGATCAGAGAGAAGGTAGGAGAGAGGAAG
GCTGGGTCAGAGTGGAAGGTAAGATCAAAGAGGAAGGTAGGATTA
Right flanking sequence: Indices 18228 -- 18727
CAGAAAGGCTAGACCAGAGAGGAAGGTAGGATCATGGAGATCCGCTAGTGTTCGTGGTATACGGC
GAATAGCCACCACTACCACGCTAAATTCTCCATTGCACAGAAGACTCGTACATTCTTAAAGTCTG
TCCATTTTCCCTGGTATCATTACTCATTAGTCATTAAATAAATAGGTAGGTAGTCCAGCCTCCGC
CTCCTACTGGCTGCTGGGCACCTGGACCTGGTGCTGGGTGATCTCCACCGTGCACAACTGGCCGA
TGATCGGCTCAAGCTCCTCGTCCTCGGAGTCGGACACCACCGACTCGTCCTTCGCCACGGGACTG
GCCTTGAACACGTGCTCGCCCCGGCTCCACTCGCCCTCGAACCCGTAGCCCGCGATCCGGCTGGT
GTACTGCGGGAGAAGCTGGCTGGCCGGCTCGAGGGTCGGAGAGAGCTCAGCACGGGCCGCTGGCT
GGGCCGCTGGCTGGGCCGCGGGGAAGTCCAGGTCGTAGCCCACGC
Found at i:18218 original size:12 final size:12
Alignment explanation
Indices: 18146--18222 Score: 73
Period size: 12 Copynumber: 6.0 Consensus size: 12
18136 GGTAGGATCA
* *
18146 GAGAGAAAGTAA
1 GAGAGAAGGTAG
18158 GAGAGAAGGTAG
1 GAGAGAAGGTAG
18170 GAGAGAAGGTAG
1 GAGAGAAGGTAG
* *
18182 GATCAGGGAGAAAGTAA
1 G---A--GAGAAGGTAG
18199 GAGAGAAGGTAG
1 GAGAGAAGGTAG
18211 GAGAGAAGGTAG
1 GAGAGAAGGTAG
18223 CATCACAGAA
Statistics
Matches: 54, Mismatches: 6, Indels: 10
0.77 0.09 0.14
Matches are distributed among these distances:
12 43 0.80
14 1 0.02
15 1 0.02
17 9 0.17
ACGTcount: A:0.45, C:0.01, G:0.44, T:0.09
Consensus pattern (12 bp):
GAGAGAAGGTAG
Left flanking sequence: Indices 17646 -- 18145
TAAACAACTTGATGTACGGCCCCGTGACCTGGGTGGCCCATATGGGGGTTTCTTACCGGGTGGCA
AAGTGGTTGAACGCCCGGTTGTTGGACGACAAGATCGAGGACGACTACAAGAAGTATATTTAGTG
ATGGTTTACGACTAATAAATGCATAATGATGGTAGAAGCGGTGATTGGGCGTGGTTGGGAGGCTA
CGGTGATGACGTTGATCTCACGTGATCAAAAGTGGTGATGAATGAAGAGGAGGGTAGAATCAGAG
AGAAGGTAGGAGAGAAGGGAGAGTTAGAAGAGTGACTGGAGTTAGGGTCTTACTACTATCACACC
TTCCCGACCTGCGTTAGAGGACTTGCTTTCATCCAATTCCACCAGCTGGCTCCACACACAGCTAA
TTCAATACAAGAGGAGGTAGGATCAGAGAGAAGGTAGGAGAGAGGAAGGCTGGGTCAGAGTGGAA
GGTAAGATCAAAGAGGAAGGTAGGATTAGAGAGAAGGTAGGATCA
Right flanking sequence: Indices 18223 -- 18722
CATCACAGAAAGGCTAGACCAGAGAGGAAGGTAGGATCATGGAGATCCGCTAGTGTTCGTGGTAT
ACGGCGAATAGCCACCACTACCACGCTAAATTCTCCATTGCACAGAAGACTCGTACATTCTTAAA
GTCTGTCCATTTTCCCTGGTATCATTACTCATTAGTCATTAAATAAATAGGTAGGTAGTCCAGCC
TCCGCCTCCTACTGGCTGCTGGGCACCTGGACCTGGTGCTGGGTGATCTCCACCGTGCACAACTG
GCCGATGATCGGCTCAAGCTCCTCGTCCTCGGAGTCGGACACCACCGACTCGTCCTTCGCCACGG
GACTGGCCTTGAACACGTGCTCGCCCCGGCTCCACTCGCCCTCGAACCCGTAGCCCGCGATCCGG
CTGGTGTACTGCGGGAGAAGCTGGCTGGCCGGCTCGAGGGTCGGAGAGAGCTCAGCACGGGCCGC
TGGCTGGGCCGCTGGCTGGGCCGCGGGGAAGTCCAGGTCGTAGCC
Found at i:18688 original size:12 final size:12
Alignment explanation
Indices: 18671--18701 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
18661 AGCTCAGCAC
18671 GGGCCGCTGGCT
1 GGGCCGCTGGCT
18683 GGGCCGCTGGCT
1 GGGCCGCTGGCT
18695 GGGCCGC
1 GGGCCGC
18702 GGGGAAGTCC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.00, C:0.35, G:0.52, T:0.13
Consensus pattern (12 bp):
GGGCCGCTGGCT
Left flanking sequence: Indices 18171 -- 18670
AGAGAAGGTAGGATCAGGGAGAAAGTAAGAGAGAAGGTAGGAGAGAAGGTAGCATCACAGAAAGG
CTAGACCAGAGAGGAAGGTAGGATCATGGAGATCCGCTAGTGTTCGTGGTATACGGCGAATAGCC
ACCACTACCACGCTAAATTCTCCATTGCACAGAAGACTCGTACATTCTTAAAGTCTGTCCATTTT
CCCTGGTATCATTACTCATTAGTCATTAAATAAATAGGTAGGTAGTCCAGCCTCCGCCTCCTACT
GGCTGCTGGGCACCTGGACCTGGTGCTGGGTGATCTCCACCGTGCACAACTGGCCGATGATCGGC
TCAAGCTCCTCGTCCTCGGAGTCGGACACCACCGACTCGTCCTTCGCCACGGGACTGGCCTTGAA
CACGTGCTCGCCCCGGCTCCACTCGCCCTCGAACCCGTAGCCCGCGATCCGGCTGGTGTACTGCG
GGAGAAGCTGGCTGGCCGGCTCGAGGGTCGGAGAGAGCTCAGCAC
Right flanking sequence: Indices 18702 -- 19201
GGGGAAGTCCAGGTCGTAGCCCACGCTTTCGACTCCGCTGACGGCCCGCGAGAGGTTGGGCTTGC
GCTTGGTGGGGCTCTGGGACGGCGTCTGGCCGGGACTGATCACTACGGAGCCCTTTACGGGGCTT
CTCTGGGGCGAGTCGCCAAAGCTGACGCCGATGACCAGGCCGGGGAAGAGCCGGCGAGGCGAGAG
ATGCGGTGTGGGGCCTCGCTGGAGCCGCGGGATGGGCGTGCTGGTGTGCATGAACAGCTTGAGCG
GCGACCCAGACGGCGACACCACCGGGTTTCTGCTTCGGACCGGGCTCAGGACCGCTTTCTTCAAC
GGGCTCAGGACCGCTTTCTTCAACGGGCTCACTTTGTGGGGCATTCTAAACTTTCCCGGCGAAGA
TTGCGGGCCGTTGAGCGGGCTGCTCGAGGGCACAAGCACCCTGGGCAGGCCGCGAGGCAGAGCCC
TGGCCAGCTCCTCGAGCACCTGCGAGCCCACGAGGAACTCTTTGG
Found at i:19029 original size:24 final size:24
Alignment explanation
Indices: 19002--19057 Score: 112
Period size: 24 Copynumber: 2.3 Consensus size: 24
18992 TGCTTCGGAC
19002 CGGGCTCAGGACCGCTTTCTTCAA
1 CGGGCTCAGGACCGCTTTCTTCAA
19026 CGGGCTCAGGACCGCTTTCTTCAA
1 CGGGCTCAGGACCGCTTTCTTCAA
19050 CGGGCTCA
1 CGGGCTCA
19058 CTTTGTGGGG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 32 1.00
ACGTcount: A:0.16, C:0.34, G:0.27, T:0.23
Consensus pattern (24 bp):
CGGGCTCAGGACCGCTTTCTTCAA
Left flanking sequence: Indices 18502 -- 19001
TCCTCGTCCTCGGAGTCGGACACCACCGACTCGTCCTTCGCCACGGGACTGGCCTTGAACACGTG
CTCGCCCCGGCTCCACTCGCCCTCGAACCCGTAGCCCGCGATCCGGCTGGTGTACTGCGGGAGAA
GCTGGCTGGCCGGCTCGAGGGTCGGAGAGAGCTCAGCACGGGCCGCTGGCTGGGCCGCTGGCTGG
GCCGCGGGGAAGTCCAGGTCGTAGCCCACGCTTTCGACTCCGCTGACGGCCCGCGAGAGGTTGGG
CTTGCGCTTGGTGGGGCTCTGGGACGGCGTCTGGCCGGGACTGATCACTACGGAGCCCTTTACGG
GGCTTCTCTGGGGCGAGTCGCCAAAGCTGACGCCGATGACCAGGCCGGGGAAGAGCCGGCGAGGC
GAGAGATGCGGTGTGGGGCCTCGCTGGAGCCGCGGGATGGGCGTGCTGGTGTGCATGAACAGCTT
GAGCGGCGACCCAGACGGCGACACCACCGGGTTTCTGCTTCGGAC
Right flanking sequence: Indices 19058 -- 19557
CTTTGTGGGGCATTCTAAACTTTCCCGGCGAAGATTGCGGGCCGTTGAGCGGGCTGCTCGAGGGC
ACAAGCACCCTGGGCAGGCCGCGAGGCAGAGCCCTGGCCAGCTCCTCGAGCACCTGCGAGCCCAC
GAGGAACTCTTTGGCCGTGGAGTAGCCCTCGCTGTCGCTGTCGTCGATGAACGCGAGGTTGACGG
TGTTGGGTTTGGTGGGGGACTCTTCGAGATTGGACAGCTGGGGCACCAACACCGTGGGGGGCTCG
AGCGATAGGCGGCGCTGGGCCGAGGCCACGGGGGAGGCGTGCGAGTCTACGGGTGCCTCTGGCGA
GTCTGGAGCTTGGTCATGGGTTTGTCGGGGCGATTCTGGCCGGTTGAGTGCCAGTCGGGGGGATT
CTGGCGGCTCGGTGAGGCTCAGGGTCGGGATTGGCGGTGGGTTGGAGCGCTGAGATGGGTCTATG
TGGCTCCCTGAATCTCTACTGCTCAGCTCCCTGTCTTCATCAGCA
Found at i:19586 original size:12 final size:12
Alignment explanation
Indices: 19569--19637 Score: 120
Period size: 12 Copynumber: 5.8 Consensus size: 12
19559 TCTGAGACCG
19569 GCTCAGATCCCT
1 GCTCAGATCCCT
19581 GCTCAGATCCCT
1 GCTCAGATCCCT
*
19593 GCTCAGATCTCT
1 GCTCAGATCCCT
19605 GCTCAGATCCCT
1 GCTCAGATCCCT
*
19617 GCTCAGATCTCT
1 GCTCAGATCCCT
19629 GCTCAGATC
1 GCTCAGATC
19638 AACGCGCCGC
Statistics
Matches: 54, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 54 1.00
ACGTcount: A:0.17, C:0.38, G:0.17, T:0.28
Consensus pattern (12 bp):
GCTCAGATCCCT
Left flanking sequence: Indices 19069 -- 19568
ATTCTAAACTTTCCCGGCGAAGATTGCGGGCCGTTGAGCGGGCTGCTCGAGGGCACAAGCACCCT
GGGCAGGCCGCGAGGCAGAGCCCTGGCCAGCTCCTCGAGCACCTGCGAGCCCACGAGGAACTCTT
TGGCCGTGGAGTAGCCCTCGCTGTCGCTGTCGTCGATGAACGCGAGGTTGACGGTGTTGGGTTTG
GTGGGGGACTCTTCGAGATTGGACAGCTGGGGCACCAACACCGTGGGGGGCTCGAGCGATAGGCG
GCGCTGGGCCGAGGCCACGGGGGAGGCGTGCGAGTCTACGGGTGCCTCTGGCGAGTCTGGAGCTT
GGTCATGGGTTTGTCGGGGCGATTCTGGCCGGTTGAGTGCCAGTCGGGGGGATTCTGGCGGCTCG
GTGAGGCTCAGGGTCGGGATTGGCGGTGGGTTGGAGCGCTGAGATGGGTCTATGTGGCTCCCTGA
ATCTCTACTGCTCAGCTCCCTGTCTTCATCAGCACTCTGAGACCG
Right flanking sequence: Indices 19638 -- 20137
AACGCGCCGCCTTTTGACCGGTGAAGACACCGTCTCAAGCAATTCCGGCGACCGGGTGAGCAAAA
GCGGACTGCCTGTCCCTTGTAAACTGCTCAGTTTGAGCTCAGGAGACCGGAGGGAGTACTGAGAC
GGGTACGGAGGCGAGCTCTGGTGCGGGTTTAGCGGGGAAAACGGCGAAGGAGAGGCCGCGCCAGA
GTGGGAGTACCCATTGCTACAGTACCCATTGCTACCGGCCTGGGATCTACCCTGGGACCCGGGCT
GTTCTATACAGTCATTCCCACCGTTTTCATGCTCCTCTGAGCCCTGGATCGACGGAAGAATCGCC
AGAAGCAAGCCGAAGATCGCAGCGCTCTCCTTTTCGCCTGGCTCATACTCAGGCCCTTCAGCCAC
CCCGCCCTTCTCCTTCGACCCACCGGCCAAAAGACTCGGCACAGTGGGCACGTCGCTCTCGTCCA
CCGGCTGCTTGTCCTCGTCGTCCTCTTCTTCCACCCCCTCTTCCT
Found at i:19858 original size:15 final size:15
Alignment explanation
Indices: 19838--19867 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
19828 CCAGAGTGGG
19838 AGTACCCATTGCTAC
1 AGTACCCATTGCTAC
19853 AGTACCCATTGCTAC
1 AGTACCCATTGCTAC
19868 CGGCCTGGGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.27, C:0.33, G:0.13, T:0.27
Consensus pattern (15 bp):
AGTACCCATTGCTAC
Left flanking sequence: Indices 19338 -- 19837
CGAGGCCACGGGGGAGGCGTGCGAGTCTACGGGTGCCTCTGGCGAGTCTGGAGCTTGGTCATGGG
TTTGTCGGGGCGATTCTGGCCGGTTGAGTGCCAGTCGGGGGGATTCTGGCGGCTCGGTGAGGCTC
AGGGTCGGGATTGGCGGTGGGTTGGAGCGCTGAGATGGGTCTATGTGGCTCCCTGAATCTCTACT
GCTCAGCTCCCTGTCTTCATCAGCACTCTGAGACCGGCTCAGATCCCTGCTCAGATCCCTGCTCA
GATCTCTGCTCAGATCCCTGCTCAGATCTCTGCTCAGATCAACGCGCCGCCTTTTGACCGGTGAA
GACACCGTCTCAAGCAATTCCGGCGACCGGGTGAGCAAAAGCGGACTGCCTGTCCCTTGTAAACT
GCTCAGTTTGAGCTCAGGAGACCGGAGGGAGTACTGAGACGGGTACGGAGGCGAGCTCTGGTGCG
GGTTTAGCGGGGAAAACGGCGAAGGAGAGGCCGCGCCAGAGTGGG
Right flanking sequence: Indices 19868 -- 20367
CGGCCTGGGATCTACCCTGGGACCCGGGCTGTTCTATACAGTCATTCCCACCGTTTTCATGCTCC
TCTGAGCCCTGGATCGACGGAAGAATCGCCAGAAGCAAGCCGAAGATCGCAGCGCTCTCCTTTTC
GCCTGGCTCATACTCAGGCCCTTCAGCCACCCCGCCCTTCTCCTTCGACCCACCGGCCAAAAGAC
TCGGCACAGTGGGCACGTCGCTCTCGTCCACCGGCTGCTTGTCCTCGTCGTCCTCTTCTTCCACC
CCCTCTTCCTCCACCCTCTCTTCCTCCACTCCCTCAAGCACGTGGACCGCCCCAGCCTGAGTCCC
GGGCCCGCCCTGGAAGCTCACTAGCGGCTGGTATTGCACTGGCGCCGGCTCTATCGGGTCTGGCT
CGTACTCCGAGTCGTCCACCTCGAAGATCTCGCCCTCCTGGGTCAAGGTAACCACCCCTCCTTCG
CTACACTCGTCCGAGTAGCACGATTCTCCGTCGCTCAGAGCGCCC
Found at i:20134 original size:15 final size:15
Alignment explanation
Indices: 20114--20162 Score: 71
Period size: 15 Copynumber: 3.3 Consensus size: 15
20104 TCCTCGTCGT
*
20114 CCTCTTCTTCCACCC
1 CCTCTTCCTCCACCC
20129 CCTCTTCCTCCACCC
1 CCTCTTCCTCCACCC
* *
20144 TCTCTTCCTCCACTC
1 CCTCTTCCTCCACCC
20159 CCTC
1 CCTC
20163 AAGCACGTGG
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
15 30 1.00
ACGTcount: A:0.06, C:0.61, G:0.00, T:0.33
Consensus pattern (15 bp):
CCTCTTCCTCCACCC
Left flanking sequence: Indices 19614 -- 20113
CCTGCTCAGATCTCTGCTCAGATCAACGCGCCGCCTTTTGACCGGTGAAGACACCGTCTCAAGCA
ATTCCGGCGACCGGGTGAGCAAAAGCGGACTGCCTGTCCCTTGTAAACTGCTCAGTTTGAGCTCA
GGAGACCGGAGGGAGTACTGAGACGGGTACGGAGGCGAGCTCTGGTGCGGGTTTAGCGGGGAAAA
CGGCGAAGGAGAGGCCGCGCCAGAGTGGGAGTACCCATTGCTACAGTACCCATTGCTACCGGCCT
GGGATCTACCCTGGGACCCGGGCTGTTCTATACAGTCATTCCCACCGTTTTCATGCTCCTCTGAG
CCCTGGATCGACGGAAGAATCGCCAGAAGCAAGCCGAAGATCGCAGCGCTCTCCTTTTCGCCTGG
CTCATACTCAGGCCCTTCAGCCACCCCGCCCTTCTCCTTCGACCCACCGGCCAAAAGACTCGGCA
CAGTGGGCACGTCGCTCTCGTCCACCGGCTGCTTGTCCTCGTCGT
Right flanking sequence: Indices 20163 -- 20662
AAGCACGTGGACCGCCCCAGCCTGAGTCCCGGGCCCGCCCTGGAAGCTCACTAGCGGCTGGTATT
GCACTGGCGCCGGCTCTATCGGGTCTGGCTCGTACTCCGAGTCGTCCACCTCGAAGATCTCGCCC
TCCTGGGTCAAGGTAACCACCCCTCCTTCGCTACACTCGTCCGAGTAGCACGATTCTCCGTCGCT
CAGAGCGCCCTCTAGATCGTATAGCCATCGTAAATCAGCGTCGCCAAGCAGCGGAGTCTCCGCAG
CCTGGTCCCAGAGCAGCGGGGCTTCTGGAGCTTCTGGAGCTTGAGCCTCTCCTTCGGGCTCCGGG
GTGACTATGAGCGATCTCTTGACACCCCGTTGGCCCTCCATCCGCCGCTGGATTCCCTGGAGACT
GCGCTTGTACTTGGGATGGAGCCTCGGGAACTTGAGCCGCAACTGGCGGATCGCAAGCTGCCAGT
CGGCCTCGTTCACGAGCCTCAGCGAGTCTGTCGGCCCATCCATGA
Found at i:21372 original size:21 final size:21
Alignment explanation
Indices: 21348--21403 Score: 78
Period size: 20 Copynumber: 2.7 Consensus size: 21
21338 GCTATTGGTA
21348 AGGACAACCGCTACATTAGCG
1 AGGACAACCGCTACATTAGCG
*
21369 AGGAC-ACCGCTACATTGGCG
1 AGGACAACCGCTACATTAGCG
* *
21389 AGGACAGCGGCTACA
1 AGGACAACCGCTACA
21404 CTACCGCTAC
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
20 19 0.61
21 12 0.39
ACGTcount: A:0.30, C:0.29, G:0.29, T:0.12
Consensus pattern (21 bp):
AGGACAACCGCTACATTAGCG
Left flanking sequence: Indices 20848 -- 21347
TTCTTGGGCGGGTTCTCCGCAGCAGCAGCGTCCCCGTCCTCGCTCCGGAACAGCTGGAGCGTTGA
GATGAGCCGTGTCTCGTGCTCTGCCCGACGTTCCTGGCTCTCCACCTCCTCGTGGCGAGCCTGGA
TCTGGGTCAGGATAAAATACATCGAGAACGGCTGGGGCTTCGTGGCACAGGCTCGTCTCGTGGCT
TCTCTCGGCGGCTTAAGGTTGATCCGTTGGGTCACGCGTCTGATCTGATGCGAACAAACGCGTCT
CGAAAACATAGAGGGGCAAAATACATGGTCTACGGTGGAAAACACAGAGATAGGACAGTATGATG
GTGGATGCTTCAGCACACGACTTCCATCATTGTCCTGAATCCCATAGTTAGTTGAAAACCCAACC
ATGCACGGAAATTCGCGAATGATGGCTATCAGTGCCTCGAACAATGAATACGAATACTCGAGCCT
GATCAACAGGGTTCGTCTGAGCGACCTGACGGAATGCTATTGGTA
Right flanking sequence: Indices 21404 -- 21903
CTACCGCTACCTGGCTCGAAGACTCTGACCCTACTCTACGTAGATTTGTAAAACCATCTACCAAA
CGTAAAGGGTACGCAACAGGGTACGCAACACCCTTGCAGGTCGACAAGCACAACGAACCAATCGT
CAACTCTGTAAGCCAAGTAACGGGTGGTGAGCTCGTGTTCTGGACGTGTAGTACTCATTCCGTCG
GCTCCATAAAGCACGTAAACTTGCCACCTATCTTTGCCACCTCTCCTTTCTTCCTTGGAAACACT
ACAACGAGGCGTCCAGAAGATTTGACCCTCGTTGAAGTATTGGAAGAAACTCTTCAACGTCAATA
GTGCGTAGATTCTGGAGACTCCTCCGGCACGTAGCTCTGACACCGGTGTCTGTATGCGCTCAAGC
GGCCTAGGATGCCATCGATCCGCTTGTGACACGTCAGAATGAGCTCCTTGTGAGACTGTGCGGTA
AGGATGCCTGCCTCAGAACAGAAACTCAACAAGTCAGCGAAAAGC
Found at i:21491 original size:12 final size:12
Alignment explanation
Indices: 21474--21498 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
21464 CCAAACGTAA
21474 AGGGTACGCAAC
1 AGGGTACGCAAC
21486 AGGGTACGCAAC
1 AGGGTACGCAAC
21498 A
1 A
21499 CCCTTGCAGG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.36, C:0.24, G:0.32, T:0.08
Consensus pattern (12 bp):
AGGGTACGCAAC
Left flanking sequence: Indices 20974 -- 21473
TGGATCTGGGTCAGGATAAAATACATCGAGAACGGCTGGGGCTTCGTGGCACAGGCTCGTCTCGT
GGCTTCTCTCGGCGGCTTAAGGTTGATCCGTTGGGTCACGCGTCTGATCTGATGCGAACAAACGC
GTCTCGAAAACATAGAGGGGCAAAATACATGGTCTACGGTGGAAAACACAGAGATAGGACAGTAT
GATGGTGGATGCTTCAGCACACGACTTCCATCATTGTCCTGAATCCCATAGTTAGTTGAAAACCC
AACCATGCACGGAAATTCGCGAATGATGGCTATCAGTGCCTCGAACAATGAATACGAATACTCGA
GCCTGATCAACAGGGTTCGTCTGAGCGACCTGACGGAATGCTATTGGTAAGGACAACCGCTACAT
TAGCGAGGACACCGCTACATTGGCGAGGACAGCGGCTACACTACCGCTACCTGGCTCGAAGACTC
TGACCCTACTCTACGTAGATTTGTAAAACCATCTACCAAACGTAA
Right flanking sequence: Indices 21499 -- 21998
CCCTTGCAGGTCGACAAGCACAACGAACCAATCGTCAACTCTGTAAGCCAAGTAACGGGTGGTGA
GCTCGTGTTCTGGACGTGTAGTACTCATTCCGTCGGCTCCATAAAGCACGTAAACTTGCCACCTA
TCTTTGCCACCTCTCCTTTCTTCCTTGGAAACACTACAACGAGGCGTCCAGAAGATTTGACCCTC
GTTGAAGTATTGGAAGAAACTCTTCAACGTCAATAGTGCGTAGATTCTGGAGACTCCTCCGGCAC
GTAGCTCTGACACCGGTGTCTGTATGCGCTCAAGCGGCCTAGGATGCCATCGATCCGCTTGTGAC
ACGTCAGAATGAGCTCCTTGTGAGACTGTGCGGTAAGGATGCCTGCCTCAGAACAGAAACTCAAC
AAGTCAGCGAAAAGCTGTATGGGAGGGGGGTCATGATGACTCTCGAGCATGGTCTTGAAGATTTT
GGCAATGTGCTCCTTGTTGAGGTACCGTACATCAGTACGAAGGTC
Found at i:24603 original size:66 final size:66
Alignment explanation
Indices: 24491--24615 Score: 171
Period size: 66 Copynumber: 1.9 Consensus size: 66
24481 CGTTTTCTTC
* * **
24491 GAGGTGGTACTTGTTTCACTTGTTTTGACCGAAGAGGAGGTGATCGTTTCACTGGATACATCCGT
1 GAGGTGGTACTTGTTTCACTGGATACGACCGAAGAGGAGGTGATCGTTTCACTGGATACATCCGT
24556 T
66 T
* **
24557 GAGGTGGTACTTGTTTCACTGGATACGTCCGTTGAGGAGGAT-ATCGTTTCACTGGATAC
1 GAGGTGGTACTTGTTTCACTGGATACGACCGAAGAGGAGG-TGATCGTTTCACTGGATAC
24616 GTCTGACGAG
Statistics
Matches: 51, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
66 50 0.98
67 1 0.02
ACGTcount: A:0.20, C:0.17, G:0.30, T:0.34
Consensus pattern (66 bp):
GAGGTGGTACTTGTTTCACTGGATACGACCGAAGAGGAGGTGATCGTTTCACTGGATACATCCGT
T
Left flanking sequence: Indices 23991 -- 24490
TCTCGTCTAGAAAGACCGGGACATTTTGGGGCCCGTTCCAAAAGTAACGTTGGAGGTTGGTTTCG
CATACCTGATCGCCATGACAGTATCCAATTGGGTGAATCGGACTGGAACCAAGGTTGAAGATCCT
CGGCACCCGTTCGGCCCTCTCTTCGAGCTTTTTGTCGTCGTGGTTTTCATCATGCTGAAGAGGCT
CGCTTCTTTTTTGACTGGAGTTCGACCATCCCGTGCCCCAAGTAAGCGTGGGATTGGAATCTTCC
GCCTCGCCCGTCTGTGTGGTGGCTATGAAGGTGATGGTATGGCCTTCTTCATCGGTAGCAGTTAC
TTGCGAAGTGGTTTTTCCGTCGTCACCGGGACAGTAAGGTGGACAACGATTAGGGACGAAAACAG
GTGGTATCACACCCCCCACAGGTGGCGGAATTGGGACATTTATGTTGGTCCCAGGAAGCTTCATT
GAAGTTTTCGGTTTGTGAGACTCGTCCTCAGTCTTCGTTTTCTTC
Right flanking sequence: Indices 24616 -- 25115
GTCTGACGAGGATTCCGAGCTCAGCTCCTCACAATTTGGGACATGGATAGTGAATTCTTCGACTG
ACAACTTCGAGAGTGGTACACCCTCACTGCTTGCGTCGATAGGGGTACACGACTCAAGCTTGATA
GGTACTTCAACCAGACCCTTGACGACAAAAGCTTTCTGAAATCGAGCTAGTTTGCGCACAGACAC
CTCGCTACCTTCAACAGTAAACAGACTGCAATCAGGCGAAGTCTTGATCAGATCCCCCGAAACTA
CAAGAATCTCGTTCTCAGACCGGACACTCACGGTGGCTCCAGTTTGTTGTACCTGCGGCAGACCA
CCAACTGCTACAGTCTCACCAGCAAAGGAGACAACCCCGTGGTTGGTCACCATTGTGAGAGGGCC
CGAAATGGTTTCCGTAGGAAGAGAAGTTTCTTTGGTGGAAGTAGTTGGTTTTGTAGTTGTGGTAG
AGGTGGGACTAGGTGTTGTAAGCTGCACTGGTTCTGGGTCCTGCA
Found at i:24627 original size:33 final size:32
Alignment explanation
Indices: 24524--24618 Score: 136
Period size: 33 Copynumber: 2.9 Consensus size: 32
24514 TTTGACCGAA
*
24524 GAGGAGGTGATCGTTTCACTGGATACATCCGTT
1 GAGGAGGT-ATCGTTTCACTGGATACGTCCGTT
* *
24557 GAGGTGGTACTTGTTTCACTGGATACGTCCGTT
1 GAGGAGGTA-TCGTTTCACTGGATACGTCCGTT
24590 GAGGAGGATATCGTTTCACTGGATACGTC
1 GAGGAGG-TATCGTTTCACTGGATACGTC
24619 TGACGAGGAT
Statistics
Matches: 55, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
32 1 0.02
33 52 0.95
34 2 0.04
ACGTcount: A:0.20, C:0.18, G:0.31, T:0.32
Consensus pattern (32 bp):
GAGGAGGTATCGTTTCACTGGATACGTCCGTT
Left flanking sequence: Indices 24024 -- 24523
CGTTCCAAAAGTAACGTTGGAGGTTGGTTTCGCATACCTGATCGCCATGACAGTATCCAATTGGG
TGAATCGGACTGGAACCAAGGTTGAAGATCCTCGGCACCCGTTCGGCCCTCTCTTCGAGCTTTTT
GTCGTCGTGGTTTTCATCATGCTGAAGAGGCTCGCTTCTTTTTTGACTGGAGTTCGACCATCCCG
TGCCCCAAGTAAGCGTGGGATTGGAATCTTCCGCCTCGCCCGTCTGTGTGGTGGCTATGAAGGTG
ATGGTATGGCCTTCTTCATCGGTAGCAGTTACTTGCGAAGTGGTTTTTCCGTCGTCACCGGGACA
GTAAGGTGGACAACGATTAGGGACGAAAACAGGTGGTATCACACCCCCCACAGGTGGCGGAATTG
GGACATTTATGTTGGTCCCAGGAAGCTTCATTGAAGTTTTCGGTTTGTGAGACTCGTCCTCAGTC
TTCGTTTTCTTCGAGGTGGTACTTGTTTCACTTGTTTTGACCGAA
Right flanking sequence: Indices 24619 -- 25118
TGACGAGGATTCCGAGCTCAGCTCCTCACAATTTGGGACATGGATAGTGAATTCTTCGACTGACA
ACTTCGAGAGTGGTACACCCTCACTGCTTGCGTCGATAGGGGTACACGACTCAAGCTTGATAGGT
ACTTCAACCAGACCCTTGACGACAAAAGCTTTCTGAAATCGAGCTAGTTTGCGCACAGACACCTC
GCTACCTTCAACAGTAAACAGACTGCAATCAGGCGAAGTCTTGATCAGATCCCCCGAAACTACAA
GAATCTCGTTCTCAGACCGGACACTCACGGTGGCTCCAGTTTGTTGTACCTGCGGCAGACCACCA
ACTGCTACAGTCTCACCAGCAAAGGAGACAACCCCGTGGTTGGTCACCATTGTGAGAGGGCCCGA
AATGGTTTCCGTAGGAAGAGAAGTTTCTTTGGTGGAAGTAGTTGGTTTTGTAGTTGTGGTAGAGG
TGGGACTAGGTGTTGTAAGCTGCACTGGTTCTGGGTCCTGCATTT
Done.