Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: scaffold33
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 6629
ACGTcount: A:0.27, C:0.24, G:0.22, T:0.26
Found at i:4367 original size:12 final size:12
Alignment explanation
Indices: 4350--4375 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
4340 GAGACGTGGG
4350 GGATTAATCGGA
1 GGATTAATCGGA
4362 GGATTAATCGGA
1 GGATTAATCGGA
4374 GG
1 GG
4376 TTGGCTCCCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.31, C:0.08, G:0.38, T:0.23
Consensus pattern (12 bp):
GGATTAATCGGA
Left flanking sequence: Indices 3850 -- 4349
AGGCACCCAGAGTCAGTATCCGTACCTCAGTGATGAGAAACCAAGGGATCATTTCCGTGTTCCAA
GATGCAACAGCTGAAGGCACTCTTACAATGGGTGGTAGTGGAAACGGTTTAGTGAACGATGGTGT
AGTGTGTTTGAGTAAGTTTACCTGGGAGCAGGAGTCTCAGGTCACCGGTAAGGGGTGTATTCGTG
CCGGGGAAAATTCGGTGGTTCATATCAAACAAACGCTTCTGCCCATTTCGCAAACCATTTCTTTA
GACGGGCCCAATGCAGGTGTTCGTGTTGCGGATATCAATGTGGCTGATGCGTTCCGAGTTGCAGG
ACTTGGCAATGGCAATTTCGTAGCCACTGATGGTAAGATTCAGTACTACGACTACGATGAAAAAA
AGGGTATTCTTACTATCTCGGCCGACCCCCTAGGTCTTCAAAAGGTCAAATTCAACATCGGATTA
GGCTATGATAGAGACAAGTTCACTATTGGAACTGAGAGACGTGGG
Right flanking sequence: Indices 4376 -- 4875
TTGGCTCCCAGAAATCGACAGAATCCTTTATTATGACTATCCTGTGCCGGAAGGGGCCAATCTGA
ACGCTCACTGCTTAGCATGCCCTCTGCCACCTGCCCACCCTGGTTGGGATAAAATTCCTGACGAG
TCTGAGATTGTGGATAAAGAGCCAGCAACCATATACATCTCGGGTCTGGAAGGCACAGTCACTGA
ATGGTACCCAACTATAGTATTCACCGGTCCCAATCCATTTAAGGACAGTTCTGATATTGCTCCTA
CCACTCTGAAAGCAGCCAATGTTAGTACAACTCCTTACGATGCGCAACCCATTGAAACTGGACTG
CTTTCTGACGATTGTATTTTCTGTACACGATATCTGTCTATTTGGACATCTTTGGGCCCCGATGA
TAAAGCATTAACGGGAACGGCAGTTGTGGTTGTAACCACCGACCCTATCGGGTCGTTGTACACGT
CAACGAACTTTTGTCCAGAGTGCACTCAGTACACCACCACTTGGA
Found at i:4981 original size:129 final size:128
Alignment explanation
Indices: 4800--6629 Score: 1968
Period size: 129 Copynumber: 14.2 Consensus size: 128
4790 TGTGGTTGTA
* ** * **
4800 ACCACCGACCCTATCGGGTCGTTGTACACGTCAACGAACT-TTTGTC-CAGAGTGCACTCAGTAC
1 ACCACCGACTCTA-CGGGTCGTTGTACACAACGACGAA-TGACTGTCTC-GAGTGCACTCAGTAC
** *
4863 ACCACCACTTGGACTTCGACGGATGAAAATGGCCAAGCGAGCACTGGTACGGGTATTGTTGATGT
63 ACCACCACTTGGACCACGACGGATGAAAATGGCCAAGCGAGCACTGGTACGGGTATCGTTGATGT
4928 G
128 G
* * * *
4929 ACCACCGACTCGTACGGGTCGTTGTACACAACTACGAATGATTGTCTTGAGTGTACTCAGTACAC
1 ACCACCGACTC-TACGGGTCGTTGTACACAACGACGAATGACTGTCTCGAGTGCACTCAGTACAC
* * * *** **
4994 CATCACTTGGACTACGACTGCA-GGCGATGGTAAAGCGAGCACTGGTACGGGTATCGTTGATGTG
65 CACCACTTGGACCACGAC-GGATGAAAATGGCCAAGCGAGCACTGGTACGGGTATCGTTGATGTG
* * * * *
5058 ACCACCGACTCTAACGGGTCGTTGTACACAACTACGAATGACTGTCTTGAGTGTACTCAATATAC
1 ACCACCGACTCT-ACGGGTCGTTGTACACAACGACGAATGACTGTCTCGAGTGCACTCAGTACAC
* * *** * ** * * *
5123 CACCACTTGGACTACGACTGCA-GGCGACGGTAAAGTGAGCACTGGTACGGGCATCGTTGATGTT
65 CACCACTTGGACCACGAC-GGATGAAAATGGCCAAGCGAGCACTGGTACGGGTATCGTTGATGTG
*
5187 ACCACCGACTCTTACGGGTCGTTGTACACAACTACGAATGACTGTCTCGAGTGCACTCAGTACAC
1 ACCACCGACTC-TACGGGTCGTTGTACACAACGACGAATGACTGTCTCGAGTGCACTCAGTACAC
* * * * **
5252 CACTACTTGGACCACGACGGAT-AAGAATGGCCAGGCCAGCACTGGTACGGGCATCGTTGCCGTG
65 CACCACTTGGACCACGACGGATGAA-AATGGCCAAGCGAGCACTGGTACGGGTATCGTTGATGTG
* *
5316 ACCACCGACTCTAACGGGTCGTTGTACACGACGACTAATGACTGTCTCGAGTGCACTCAGTACAC
1 ACCACCGACTCT-ACGGGTCGTTGTACACAACGACGAATGACTGTCTCGAGTGCACTCAGTACAC
* * * * * *** * ** * *
5381 TACCACTTGGACGACCACCGCTGGTGACGGTAAAGTGAGCACTGGTACGGGTATTGTTGATGTG
65 CACCACTTGGACCACGACGGATGAAAATGGCCAAGCGAGCACTGGTACGGGTATCGTTGATGTG
* * *
5445 ACCACCGACTCTAACGGGTCGTTGTACACAACAACAAACGACTGTCTCGAGTGCACTCAGTACAC
1 ACCACCGACTCT-ACGGGTCGTTGTACACAACGACGAATGACTGTCTCGAGTGCACTCAGTACAC
* ** * * * **
5510 CACCACCTGGACCTTGACGGAT-AAGAATGGCCAGGCCAGCACTGGTACGGGCATCGTTGCCGTG
65 CACCACTTGGACCACGACGGATGAA-AATGGCCAAGCGAGCACTGGTACGGGTATCGTTGATGTG
* *
5574 ACCACCGACTCTAACGGGTCGTTGTACACAACAACGAATGACTGTCTCGAGTGCACTCAATACAC
1 ACCACCGACTCT-ACGGGTCGTTGTACACAACGACGAATGACTGTCTCGAGTGCACTCAGTACAC
* * * * **
5639 CACCACGTGGACCACGACGGAT-AAGAATGGCCAGGCCAGCACTGGTACGGGCATCGTTGCCGTG
65 CACCACTTGGACCACGACGGATGAA-AATGGCCAAGCGAGCACTGGTACGGGTATCGTTGATGTG
* * * * *
5703 ACCACCGACTCTAACGGGTCGTTGTACACAACTACAAATGATTGTCTTGAGTGTACTCAGTACAC
1 ACCACCGACTCT-ACGGGTCGTTGTACACAACGACGAATGACTGTCTCGAGTGCACTCAGTACAC
* * * * *
5768 CACTACTTGGACCACGACGGAT-AAGAATGGCCAGGCCAGCACTGGTACAGGTATTGTTGATGTG
65 CACCACTTGGACCACGACGGATGAA-AATGGCCAAGCGAGCACTGGTACGGGTATCGTTGATGTG
* * *
5832 ACCACCGACTCCAACGGGTCGTTGTACACGACGACTAATGACTGTCTCGAGTGCACTCAGTACAC
1 ACCACCGACT-CTACGGGTCGTTGTACACAACGACGAATGACTGTCTCGAGTGCACTCAGTACAC
* * * * * *** * ** * *
5897 CACTACTTGGACGACTACCGCTGGCGACGGTAAAGTGAGCACTGGTACGGGTATTGTTGATGTG
65 CACCACTTGGACCACGACGGATGAAAATGGCCAAGCGAGCACTGGTACGGGTATCGTTGATGTG
* * * * *
5961 ACCACCGACACCAACGGGTCGTTGTACACAACTACGAATGACTGTCTTGAGTGTACTCAGTACAC
1 ACCACCGAC-TCTACGGGTCGTTGTACACAACGACGAATGACTGTCTCGAGTGCACTCAGTACAC
* * * * * **
6026 CACTACCTGGACCACGACGGATGAGAATGGCCAAGCGAGCACTGGTACAGGTATTGTTGCCGTG
65 CACCACTTGGACCACGACGGATGAAAATGGCCAAGCGAGCACTGGTACGGGTATCGTTGATGTG
* *
6090 ACCACCGACTCTAACGGGTCGTTGTACACGACGACTAATGACTGTCTCGAGTGCACTCAGTACAC
1 ACCACCGACTCT-ACGGGTCGTTGTACACAACGACGAATGACTGTCTCGAGTGCACTCAGTACAC
* * * * * *** * ** * *
6155 CACTACTTGGACGACTACCGCTGGCGACGGTAAAGTGAGCACTGGTACGGGTATTGTTGATGTG
65 CACCACTTGGACCACGACGGATGAAAATGGCCAAGCGAGCACTGGTACGGGTATCGTTGATGTG
* * *
6219 ACCACCGACTCCAACGGGTCGTTGTACACGACGACTAATGACTGTCTCGAGTGCACTCAGTACAC
1 ACCACCGACT-CTACGGGTCGTTGTACACAACGACGAATGACTGTCTCGAGTGCACTCAGTACAC
* * * **
6284 CACCACGTGGACCACGACGGATGAGAATGGCCAAGCGAGCACTGGTACGGGCATCGTTGCCGTG
65 CACCACTTGGACCACGACGGATGAAAATGGCCAAGCGAGCACTGGTACGGGTATCGTTGATGTG
* * * * *
6348 ACCACCGACTCCAACGGGTCGTTGTACACGACGACTAATGACTGTCTCGAGTGCACTCAATATAC
1 ACCACCGACT-CTACGGGTCGTTGTACACAACGACGAATGACTGTCTCGAGTGCACTCAGTACAC
* ** * *
6413 TATTACTTGGACCACGACGGATGAGAATGGCCAAGCGAGCACTGGTACGGGCATCGTTGATGTG
65 CACCACTTGGACCACGACGGATGAAAATGGCCAAGCGAGCACTGGTACGGGTATCGTTGATGTG
* *
6477 ACCACCGACTCTAACGGGTCGTTGTACACAACAACGAATGACTGTCTTGAGTGCACTCAGTACAC
1 ACCACCGACTCT-ACGGGTCGTTGTACACAACGACGAATGACTGTCTCGAGTGCACTCAGTACAC
* * * * *
6542 CACTACTTGGACCACGACGGAT-AAGAATGGCCAGGCCAGCACTGGTACAGGTATTGTTGATGTG
65 CACCACTTGGACCACGACGGATGAA-AATGGCCAAGCGAGCACTGGTACGGGTATCGTTGATGTG
*
6606 ACCACCGACTCCAACGGGTCGTTG
1 ACCACCGACT-CTACGGGTCGTTG
Statistics
Matches: 1467, Mismatches: 215, Indels: 38
0.85 0.12 0.02
Matches are distributed among these distances:
128 8 0.01
129 1451 0.99
130 8 0.01
ACGTcount: A:0.26, C:0.27, G:0.26, T:0.21
Consensus pattern (128 bp):
ACCACCGACTCTACGGGTCGTTGTACACAACGACGAATGACTGTCTCGAGTGCACTCAGTACACC
ACCACTTGGACCACGACGGATGAAAATGGCCAAGCGAGCACTGGTACGGGTATCGTTGATGTG
Left flanking sequence: Indices 4300 -- 4799
GATTAGGCTATGATAGAGACAAGTTCACTATTGGAACTGAGAGACGTGGGGGATTAATCGGAGGA
TTAATCGGAGGTTGGCTCCCAGAAATCGACAGAATCCTTTATTATGACTATCCTGTGCCGGAAGG
GGCCAATCTGAACGCTCACTGCTTAGCATGCCCTCTGCCACCTGCCCACCCTGGTTGGGATAAAA
TTCCTGACGAGTCTGAGATTGTGGATAAAGAGCCAGCAACCATATACATCTCGGGTCTGGAAGGC
ACAGTCACTGAATGGTACCCAACTATAGTATTCACCGGTCCCAATCCATTTAAGGACAGTTCTGA
TATTGCTCCTACCACTCTGAAAGCAGCCAATGTTAGTACAACTCCTTACGATGCGCAACCCATTG
AAACTGGACTGCTTTCTGACGATTGTATTTTCTGTACACGATATCTGTCTATTTGGACATCTTTG
GGCCCCGATGATAAAGCATTAACGGGAACGGCAGTTGTGGTTGTA
Right flanking sequence: None
Found at i:5262 original size:258 final size:258
Alignment explanation
Indices: 4901--6629 Score: 2325
Period size: 258 Copynumber: 6.7 Consensus size: 258
4891 ATGGCCAAGC
4901 GAGCACTGGTACGGGTATTGTTGATGTGACCACCGACTCGT-ACGGGTCGTTGTACACAACTACG
1 GAGCACTGGTACGGGTATTGTTGATGTGACCACCGACTC-TAACGGGTCGTTGTACACAACTACG
* * * * * * * ** *
4965 AATGATTGTCTTGAGTGTACTCAGTACACCA-TCACTTGGACTACGACTG-CAGGCGATGGTAAA
65 AATGACTGTCTTGAGTGCACTCAGTACACCACT-ACTTGGACCACGACGGATAAG-AATGGCCAG
* ** * *
5028 GCGAGCACTGGTACGGGTATCGTTGATGTGACCACCGACTCTAACGGGTCGTTGTACACAACTAC
128 GCCAGCACTGGTACGGGTATCGTTGCCGTGACCACCGACTCTAACGGGTCGTTGTACACGACGAC
* * * * * *
5093 GAATGACTGTCTTGAGTGTACTCAATATACCACCACTTGGACTACGACTGCAGGCGACGGTAAAG
193 TAATGACTGTCTCGAGTGCACTCAATACACCACCACTTGGACGACGACCGCAGGCGACGGTAAAG
5158 T
258 T
* * * *
5159 GAGCACTGGTACGGGCATCGTTGATGTTACCACCGACTCTTACGGGTCGTTGTACACAACTACGA
1 GAGCACTGGTACGGGTATTGTTGATGTGACCACCGACTCTAACGGGTCGTTGTACACAACTACGA
*
5224 ATGACTGTCTCGAGTGCACTCAGTACACCACTACTTGGACCACGACGGATAAGAATGGCCAGGCC
66 ATGACTGTCTTGAGTGCACTCAGTACACCACTACTTGGACCACGACGGATAAGAATGGCCAGGCC
*
5289 AGCACTGGTACGGGCATCGTTGCCGTGACCACCGACTCTAACGGGTCGTTGTACACGACGACTAA
131 AGCACTGGTACGGGTATCGTTGCCGTGACCACCGACTCTAACGGGTCGTTGTACACGACGACTAA
* * * * *
5354 TGACTGTCTCGAGTGCACTCAGTACACTACCACTTGGACGACCACCGCTGGTGACGGTAAAGT
196 TGACTGTCTCGAGTGCACTCAATACACCACCACTTGGACGACGACCGCAGGCGACGGTAAAGT
* *
5417 GAGCACTGGTACGGGTATTGTTGATGTGACCACCGACTCTAACGGGTCGTTGTACACAACAACAA
1 GAGCACTGGTACGGGTATTGTTGATGTGACCACCGACTCTAACGGGTCGTTGTACACAACTACGA
* * * * **
5482 ACGACTGTCTCGAGTGCACTCAGTACACCACCACCTGGACCTTGACGGATAAGAATGGCCAGGCC
66 ATGACTGTCTTGAGTGCACTCAGTACACCACTACTTGGACCACGACGGATAAGAATGGCCAGGCC
* * * *
5547 AGCACTGGTACGGGCATCGTTGCCGTGACCACCGACTCTAACGGGTCGTTGTACACAACAACGAA
131 AGCACTGGTACGGGTATCGTTGCCGTGACCACCGACTCTAACGGGTCGTTGTACACGACGACTAA
* * * * * * * ** * *
5612 TGACTGTCTCGAGTGCACTCAATACACCACCACGTGGACCACGACGGATAAG-AATGGCCAGGC
196 TGACTGTCTCGAGTGCACTCAATACACCACCACTTGGACGACGACCG-CAGGCGACGGTAAAGT
* * * ** *
5675 CAGCACTGGTACGGGCATCGTTGCCGTGACCACCGACTCTAACGGGTCGTTGTACACAACTACAA
1 GAGCACTGGTACGGGTATTGTTGATGTGACCACCGACTCTAACGGGTCGTTGTACACAACTACGA
* *
5740 ATGATTGTCTTGAGTGTACTCAGTACACCACTACTTGGACCACGACGGATAAGAATGGCCAGGCC
66 ATGACTGTCTTGAGTGCACTCAGTACACCACTACTTGGACCACGACGGATAAGAATGGCCAGGCC
* * ** *
5805 AGCACTGGTACAGGTATTGTTGATGTGACCACCGACTCCAACGGGTCGTTGTACACGACGACTAA
131 AGCACTGGTACGGGTATCGTTGCCGTGACCACCGACTCTAACGGGTCGTTGTACACGACGACTAA
* * * *
5870 TGACTGTCTCGAGTGCACTCAGTACACCACTACTTGGACGACTACCGCTGGCGACGGTAAAGT
196 TGACTGTCTCGAGTGCACTCAATACACCACCACTTGGACGACGACCGCAGGCGACGGTAAAGT
* *
5933 GAGCACTGGTACGGGTATTGTTGATGTGACCACCGACACCAACGGGTCGTTGTACACAACTACGA
1 GAGCACTGGTACGGGTATTGTTGATGTGACCACCGACTCTAACGGGTCGTTGTACACAACTACGA
* * * * *
5998 ATGACTGTCTTGAGTGTACTCAGTACACCACTACCTGGACCACGACGGATGAGAATGGCCAAGCG
66 ATGACTGTCTTGAGTGCACTCAGTACACCACTACTTGGACCACGACGGATAAGAATGGCCAGGCC
* *
6063 AGCACTGGTACAGGTATTGTTGCCGTGACCACCGACTCTAACGGGTCGTTGTACACGACGACTAA
131 AGCACTGGTACGGGTATCGTTGCCGTGACCACCGACTCTAACGGGTCGTTGTACACGACGACTAA
* * * *
6128 TGACTGTCTCGAGTGCACTCAGTACACCACTACTTGGACGACTACCGCTGGCGACGGTAAAGT
196 TGACTGTCTCGAGTGCACTCAATACACCACCACTTGGACGACGACCGCAGGCGACGGTAAAGT
* * * *
6191 GAGCACTGGTACGGGTATTGTTGATGTGACCACCGACTCCAACGGGTCGTTGTACACGACGACTA
1 GAGCACTGGTACGGGTATTGTTGATGTGACCACCGACTCTAACGGGTCGTTGTACACAACTACGA
* * * * * *
6256 ATGACTGTCTCGAGTGCACTCAGTACACCACCACGTGGACCACGACGGATGAGAATGGCCAAGCG
66 ATGACTGTCTTGAGTGCACTCAGTACACCACTACTTGGACCACGACGGATAAGAATGGCCAGGCC
* *
6321 AGCACTGGTACGGGCATCGTTGCCGTGACCACCGACTCCAACGGGTCGTTGTACACGACGACTAA
131 AGCACTGGTACGGGTATCGTTGCCGTGACCACCGACTCTAACGGGTCGTTGTACACGACGACTAA
* * ** * * * * * ** *
6386 TGACTGTCTCGAGTGCACTCAATATACTATTACTTGGACCACGA-CGGATGAGAATGGCCAAGC
196 TGACTGTCTCGAGTGCACTCAATACACCACCACTTGGACGACGACCGCAGGCG-ACGGTAAAGT
* * *
6449 GAGCACTGGTACGGGCATCGTTGATGTGACCACCGACTCTAACGGGTCGTTGTACACAACAACGA
1 GAGCACTGGTACGGGTATTGTTGATGTGACCACCGACTCTAACGGGTCGTTGTACACAACTACGA
6514 ATGACTGTCTTGAGTGCACTCAGTACACCACTACTTGGACCACGACGGATAAGAATGGCCAGGCC
66 ATGACTGTCTTGAGTGCACTCAGTACACCACTACTTGGACCACGACGGATAAGAATGGCCAGGCC
* * ** *
6579 AGCACTGGTACAGGTATTGTTGATGTGACCACCGACTCCAACGGGTCGTTG
131 AGCACTGGTACGGGTATCGTTGCCGTGACCACCGACTCTAACGGGTCGTTG
Statistics
Matches: 1308, Mismatches: 157, Indels: 12
0.89 0.11 0.01
Matches are distributed among these distances:
257 6 0.00
258 1298 0.99
259 4 0.00
ACGTcount: A:0.26, C:0.27, G:0.26, T:0.21
Consensus pattern (258 bp):
GAGCACTGGTACGGGTATTGTTGATGTGACCACCGACTCTAACGGGTCGTTGTACACAACTACGA
ATGACTGTCTTGAGTGCACTCAGTACACCACTACTTGGACCACGACGGATAAGAATGGCCAGGCC
AGCACTGGTACGGGTATCGTTGCCGTGACCACCGACTCTAACGGGTCGTTGTACACGACGACTAA
TGACTGTCTCGAGTGCACTCAATACACCACCACTTGGACGACGACCGCAGGCGACGGTAAAGT
Left flanking sequence: Indices 4401 -- 4900
CTTTATTATGACTATCCTGTGCCGGAAGGGGCCAATCTGAACGCTCACTGCTTAGCATGCCCTCT
GCCACCTGCCCACCCTGGTTGGGATAAAATTCCTGACGAGTCTGAGATTGTGGATAAAGAGCCAG
CAACCATATACATCTCGGGTCTGGAAGGCACAGTCACTGAATGGTACCCAACTATAGTATTCACC
GGTCCCAATCCATTTAAGGACAGTTCTGATATTGCTCCTACCACTCTGAAAGCAGCCAATGTTAG
TACAACTCCTTACGATGCGCAACCCATTGAAACTGGACTGCTTTCTGACGATTGTATTTTCTGTA
CACGATATCTGTCTATTTGGACATCTTTGGGCCCCGATGATAAAGCATTAACGGGAACGGCAGTT
GTGGTTGTAACCACCGACCCTATCGGGTCGTTGTACACGTCAACGAACTTTTGTCCAGAGTGCAC
TCAGTACACCACCACTTGGACTTCGACGGATGAAAATGGCCAAGC
Right flanking sequence: None
Found at i:5514 original size:387 final size:385
Alignment explanation
Indices: 4848--6629 Score: 2276
Period size: 387 Copynumber: 4.6 Consensus size: 385
4838 CTTTTGTCCA
* **
4848 GAGTGCACTCAGTACACCACCACTTGGACTTCGACGGATGAA-AATGGCCAAGCGAGCACTGGTA
1 GAGTGCACTCAGTACACCACTACTTGGACCACGACGGAT-AAGAATGGCCAAGCGAGCACTGGTA
* * ** * *
4912 CGGGTATTGTTGATGTGACCACCGACTCGT-ACGGGTCGTTGTACACAACTACGAATGATTGTCT
65 CGGGCATCGTTGCCGTGACCACCGACTC-TAACGGGTCGTTGTACACAACGACGAATGACTGTCT
* * * *
4976 TGAGTGTACTCAGTACACCA-TCACTTGGACTACGACTGCAGGCGATGGTAAAGCGAGCACTGGT
129 TGAGTGCACTCAGTACACCACT-ACTTGGACCACGACCGCTGG-GATGGTAAAGCGAGCACTGGT
* * * *
5040 ACGGGTATCGTTGATGTGACCACCGACTCTAACGGGTCGTTGTACACAACTACGAATGACTGTCT
192 ACGGGTATTGTTGATGTGACCACCGACTCCAACGGGTCGTTGTACACAACGACTAATGACTGTCT
* * * * * *
5105 TGAGTGTACTCAATATACCACCACTTGGACTACGACTGCAGGCGACGGTAAAGTGAGCACTGGTA
257 CGAGTGCACTCAGTACACCACCACTTGGACTACGAC-GCAGGCGACGGCAAAGCGAGCACTGGTA
* * **
5170 CGGGCATCGTTGATGTTACCACCGACTCTTACGGGTCGTTGTACACAACTACGAATGACTGTCTC
321 CGGGCATCGTTGACGTGACCACCGACTCCAACGGGTCGTTGTACACAACTACGAATGACTGTCTC
* *
5235 GAGTGCACTCAGTACACCACTACTTGGACCACGACGGATAAGAATGGCCAGGCCAGCACTGGTAC
1 GAGTGCACTCAGTACACCACTACTTGGACCACGACGGATAAGAATGGCCAAGCGAGCACTGGTAC
* * *
5300 GGGCATCGTTGCCGTGACCACCGACTCTAACGGGTCGTTGTACACGACGACTAATGACTGTCTCG
66 GGGCATCGTTGCCGTGACCACCGACTCTAACGGGTCGTTGTACACAACGACGAATGACTGTCTTG
* * * * * *
5365 AGTGCACTCAGTACACTACCACTTGGACGACCACCGCTGGTGACGGTAAAGTGAGCACTGGTACG
131 AGTGCACTCAGTACACCACTACTTGGACCACGACCGCTGG-GATGGTAAAGCGAGCACTGGTACG
* * * *
5430 GGTATTGTTGATGTGACCACCGACTCTAACGGGTCGTTGTACACAACAACAAACGACTGTCTCGA
195 GGTATTGTTGATGTGACCACCGACTCCAACGGGTCGTTGTACACAACGACTAATGACTGTCTCGA
* * * *** * * * *
5495 GTGCACTCAGTACACCACCACCTGGACCT-TGACGGATAAGAATGGCCAGGCCAGCACTGGTACG
260 GTGCACTCAGTACACCACCACTTGGA-CTACGACGCAGGCG-ACGGCAAAGCGAGCACTGGTACG
* * *
5559 GGCATCGTTGCCGTGACCACCGACTCTAACGGGTCGTTGTACACAACAACGAATGACTGTCTC
323 GGCATCGTTGACGTGACCACCGACTCCAACGGGTCGTTGTACACAACTACGAATGACTGTCTC
* * * * *
5622 GAGTGCACTCAATACACCACCACGTGGACCACGACGGATAAGAATGGCCAGGCCAGCACTGGTAC
1 GAGTGCACTCAGTACACCACTACTTGGACCACGACGGATAAGAATGGCCAAGCGAGCACTGGTAC
* * *
5687 GGGCATCGTTGCCGTGACCACCGACTCTAACGGGTCGTTGTACACAACTACAAATGATTGTCTTG
66 GGGCATCGTTGCCGTGACCACCGACTCTAACGGGTCGTTGTACACAACGACGAATGACTGTCTTG
* * * * * ** * * *
5752 AGTGTACTCAGTACACCACTACTTGGACCACGACGGATAAGAATGGCCAGGCCAGCACTGGTACA
131 AGTGCACTCAGTACACCACTACTTGGACCACGACCGCT-GGGATGGTAAAGCGAGCACTGGTACG
*
5817 GGTATTGTTGATGTGACCACCGACTCCAACGGGTCGTTGTACACGACGACTAATGACTGTCTCGA
195 GGTATTGTTGATGTGACCACCGACTCCAACGGGTCGTTGTACACAACGACTAATGACTGTCTCGA
* * * * * *
5882 GTGCACTCAGTACACCACTACTTGGACGACTACCGCTGGCGACGGTAAAGTGAGCACTGGTACGG
260 GTGCACTCAGTACACCACCACTTGGACTACGA-CGCAGGCGACGGCAAAGCGAGCACTGGTACGG
* * * * *
5947 GTATTGTTGATGTGACCACCGACACCAACGGGTCGTTGTACACAACTACGAATGACTGTCTT
324 GCATCGTTGACGTGACCACCGACTCCAACGGGTCGTTGTACACAACTACGAATGACTGTCTC
* * *
6009 GAGTGTACTCAGTACACCACTACCTGGACCACGACGGATGAGAATGGCCAAGCGAGCACTGGTAC
1 GAGTGCACTCAGTACACCACTACTTGGACCACGACGGATAAGAATGGCCAAGCGAGCACTGGTAC
* * * * * *
6074 AGGTATTGTTGCCGTGACCACCGACTCTAACGGGTCGTTGTACACGACGACTAATGACTGTCTCG
66 GGGCATCGTTGCCGTGACCACCGACTCTAACGGGTCGTTGTACACAACGACGAATGACTGTCTTG
* * * *
6139 AGTGCACTCAGTACACCACTACTTGGACGACTACCGCTGGCGACGGTAAAGTGAGCACTGGTACG
131 AGTGCACTCAGTACACCACTACTTGGACCACGACCGCTGG-GATGGTAAAGCGAGCACTGGTACG
*
6204 GGTATTGTTGATGTGACCACCGACTCCAACGGGTCGTTGTACACGACGACTAATGACTGTCTCGA
195 GGTATTGTTGATGTGACCACCGACTCCAACGGGTCGTTGTACACAACGACTAATGACTGTCTCGA
* * * * * * *
6269 GTGCACTCAGTACACCACCACGTGGACCACGACGGATGAGAATGGCCAAGCGAGCACTGGTACGG
260 GTGCACTCAGTACACCACCACTTGGACTACGACGCAGGCG-ACGGCAAAGCGAGCACTGGTACGG
* * * *
6334 GCATCGTTGCCGTGACCACCGACTCCAACGGGTCGTTGTACACGACGACTAATGACTGTCTC
324 GCATCGTTGACGTGACCACCGACTCCAACGGGTCGTTGTACACAACTACGAATGACTGTCTC
* * * * *
6396 GAGTGCACTCAATATACTATTACTTGGACCACGACGGATGAGAATGGCCAAGCGAGCACTGGTAC
1 GAGTGCACTCAGTACACCACTACTTGGACCACGACGGATAAGAATGGCCAAGCGAGCACTGGTAC
** *
6461 GGGCATCGTTGATGTGACCACCGACTCTAACGGGTCGTTGTACACAACAACGAATGACTGTCTTG
66 GGGCATCGTTGCCGTGACCACCGACTCTAACGGGTCGTTGTACACAACGACGAATGACTGTCTTG
* * * * ** * * *
6526 AGTGCACTCAGTACACCACTACTTGGACCACGACGGATAAGAATGGCCAGGCCAGCACTGGTACA
131 AGTGCACTCAGTACACCACTACTTGGACCACGACCGCT-GGGATGGTAAAGCGAGCACTGGTACG
6591 GGTATTGTTGATGTGACCACCGACTCCAACGGGTCGTTG
195 GGTATTGTTGATGTGACCACCGACTCCAACGGGTCGTTG
Statistics
Matches: 1204, Mismatches: 180, Indels: 22
0.86 0.13 0.02
Matches are distributed among these distances:
386 12 0.01
387 1185 0.98
388 7 0.01
ACGTcount: A:0.26, C:0.27, G:0.26, T:0.21
Consensus pattern (385 bp):
GAGTGCACTCAGTACACCACTACTTGGACCACGACGGATAAGAATGGCCAAGCGAGCACTGGTAC
GGGCATCGTTGCCGTGACCACCGACTCTAACGGGTCGTTGTACACAACGACGAATGACTGTCTTG
AGTGCACTCAGTACACCACTACTTGGACCACGACCGCTGGGATGGTAAAGCGAGCACTGGTACGG
GTATTGTTGATGTGACCACCGACTCCAACGGGTCGTTGTACACAACGACTAATGACTGTCTCGAG
TGCACTCAGTACACCACCACTTGGACTACGACGCAGGCGACGGCAAAGCGAGCACTGGTACGGGC
ATCGTTGACGTGACCACCGACTCCAACGGGTCGTTGTACACAACTACGAATGACTGTCTC
Left flanking sequence: Indices 4348 -- 4847
GGGGATTAATCGGAGGATTAATCGGAGGTTGGCTCCCAGAAATCGACAGAATCCTTTATTATGAC
TATCCTGTGCCGGAAGGGGCCAATCTGAACGCTCACTGCTTAGCATGCCCTCTGCCACCTGCCCA
CCCTGGTTGGGATAAAATTCCTGACGAGTCTGAGATTGTGGATAAAGAGCCAGCAACCATATACA
TCTCGGGTCTGGAAGGCACAGTCACTGAATGGTACCCAACTATAGTATTCACCGGTCCCAATCCA
TTTAAGGACAGTTCTGATATTGCTCCTACCACTCTGAAAGCAGCCAATGTTAGTACAACTCCTTA
CGATGCGCAACCCATTGAAACTGGACTGCTTTCTGACGATTGTATTTTCTGTACACGATATCTGT
CTATTTGGACATCTTTGGGCCCCGATGATAAAGCATTAACGGGAACGGCAGTTGTGGTTGTAACC
ACCGACCCTATCGGGTCGTTGTACACGTCAACGAACTTTTGTCCA
Right flanking sequence: None
Done.