Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: scaffold17
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 1402145
ACGTcount: A:0.24, C:0.26, G:0.26, T:0.24
File 1 of 4
Found at i:36724 original size:15 final size:15
Alignment explanation
Indices: 36701--36730 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
36691 CCTTTCAAAG
36701 TGACAACGATGACGA
1 TGACAACGATGACGA
*
36716 TGACGACGATGACGA
1 TGACAACGATGACGA
36731 CGAGGGAATG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.37, C:0.20, G:0.30, T:0.13
Consensus pattern (15 bp):
TGACAACGATGACGA
Left flanking sequence: Indices 36201 -- 36700
ATGACAAAAAAGCGTGTTTTATCGAATGAGATTCAAAATACCTCATCAGTGTTAGAAAGCCGAAC
TCTGAAAAAAGTGGAGCTGTTCCGTCAGCTAGAACGTATTGGACGCAAACGATTTGCTCTGTATC
TTCTGCGGCTTAATGTCCCAAAAGAGGAAGTGCAAACATTGATGCCAGCGATTCCGGTGGATATC
ACTTTCAAGCTGGCTTATAAGAGAGGGTTTGGGGTGGCTTGGGCAAATGCGTCCAAAGAGCTTTC
CTCAGAAAACGACGAACGATGTAAGCCGGTTGTTGAATTATCGCACAAAACGAGTACAAAACCAT
TAATGCTGGCCTCTGACCATGATTCTGATGTTTCTCGGCGTAATGTTAAAGACTTTTCACTGGTG
ACGGGCGGTCGCATAGAGGGAGAGTCGGTTGACACTAGTTCTCGGACCACCAGCAAACTCTTGGG
CAGCGAAGAGAGGCCACCGAAAAGCGATCTTTTGCCCTTTCAAAG
Right flanking sequence: Indices 36731 -- 37230
CGAGGGAATGATTAGTGACGACTCCAACTTGTTGATACCAAATGTGCAACGTTCCCCGAGTAGCC
CTGTGTCTCCATGTGATTTCACTGTCTATGATCTGAAGATTGATTCTGGTACCGTGAACCGAGAA
AAACAGGTATTCCAATCTCCTCAAGATTCCATAGGCATGAAACCCTATCTTCCCCAAGAAACAAT
GAGACTTGAAACGGGCTTCTCTCCGTCTCCCGTGATTGTTTCAACCTCAGGTGGGATTCCTGAAT
TTGAAGAAATTGCCAATGATTCATTGGACTCGCAAAACAATCCACCAGAGATCCTCATGGCAGAA
ATGAACCACGGACATGGTGCAACTCCATTTGAAAGAGGTTATGCTTTGGGCGCACGCAAGGGTGT
CTCATTGCGCCAAAGATTGGCGGATCTCGTTCAACCTTTACTTCAAGTGGTTCCTGACTCTCGGG
ATCTTTTCACGAGCTCTTTGGACGCTGGCCCGAGTGTGATTCTAG
Found at i:50077 original size:12 final size:12
Alignment explanation
Indices: 50057--50091 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
50047 TGAAGAAGAG
50057 GACGACGATGAA
1 GACGACGATGAA
* *
50069 GATGACGATGAG
1 GACGACGATGAA
50081 GACGACGATGA
1 GACGACGATGA
50092 TGAGCACGAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.37, C:0.14, G:0.37, T:0.11
Consensus pattern (12 bp):
GACGACGATGAA
Left flanking sequence: Indices 49557 -- 50056
TCCGAAAGCTTAAGAAGAACAAAGTTGAGGACCTCGAAGCCGGTACGTCATCAGAGGAAGATGGC
AAAATTGAGAAAGCGCTGGATGTGGCAGAGACTGGTTACGATTTGACGAATGTAGTCACCTTTCG
TTCTCAAAACTCGAATGACGATTACAAGGACCCTCAACTGCCTAGCTTCGACGCTCTCAAGGTGT
TTGCTAAGCAGTTGATAGTTGAGGTTGCTAAAGTAGCTGAGTTCTATGATGCTAAGGAGAAGGAG
ATCTTCAAAAATTACAATCATCTTTTAGCAGATCTTCACAAAATGAATATTGATGTCGATGGCGT
TTTTCGGTTCACACAGGCTTATCAGGAGCCCGATTACAATTACGCACATCAACAATACAATGTTC
GCTCAACGTTGTCTCGCACAATCACCAACGCCCTGGTATTTGATACCATCAATCACGTCGACCAG
GATCATGATTTCGAGAAGCAACCGTACATTGCTGCTGAAGAAGAG
Right flanking sequence: Indices 50092 -- 50591
TGAGCACGATAAAAACTCTGCTTTGTTACTGCATGTTGATTTTGATGTGAAACAGCAAACGAAAA
TCACCCTCAAGCGTCAAGCCGCTCAGATCTTCATCTGTTTACTGGAACTCAAGCTGTACATTGAG
CTCAACAAAATCGCTTTCACAAAGATCACTAAAAAGTTTGACAAAACGTGCAAGTATGCAACTAA
GCAGGACTTCGTCACCCAATGGTTGCCCTTGAATTGCCGCGTTTTTGCAACCGACACCATGACGG
CTTTAGAGCAACGTTTGAATGAGATGGTCAAAGTTTATGCTTTGTTGCTGGGACGGATGTCATCT
AAAACCACCACAGCTGATTTGGAGCTGGTGAAAAATGAGCTCAAGCTGTCATTGAGGGAACACAT
TGTTTGGGAGCGTAACACTGTCTGGAAAGATTTGCTTTCTCTTGAGAAAAGACTGTATGGGCTTC
ATTTGGATGACGATGCTGTTCAGGGTGCGCGGATGGGTGATGAAG
Found at i:78519 original size:33 final size:33
Alignment explanation
Indices: 78475--78573 Score: 144
Period size: 33 Copynumber: 3.0 Consensus size: 33
78465 CAGGAAGGTC
* * *
78475 AGTAACCTCAGCTTGTCCAACAAGCAGCTGGGG
1 AGTAACTTCAGCCTCTCCAACAAGCAGCTGGGG
*
78508 AGTAACTTCAGCCTCTCCGACAAGCAGCTGGGG
1 AGTAACTTCAGCCTCTCCAACAAGCAGCTGGGG
* *
78541 AGTAATTTCAGCCTCTCCAACAATCAGCTGGGG
1 AGTAACTTCAGCCTCTCCAACAAGCAGCTGGGG
78574 GGCTTGACCG
Statistics
Matches: 59, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
33 59 1.00
ACGTcount: A:0.26, C:0.28, G:0.25, T:0.20
Consensus pattern (33 bp):
AGTAACTTCAGCCTCTCCAACAAGCAGCTGGGG
Left flanking sequence: Indices 77975 -- 78474
GGGGCCGTTAAAATGCAGATTCATCTTGTACATATTTGGGTATGAAAGCGACTTTTTCATTCGGT
ACTACATCCGAACTAGATTTGGAAGTATTTATTCGTCATGTAACTCGAATGGACATGCTTTCTTG
TAAAGTCATATTTTAATACTTGCAGCTGAAACGTGAGGTGACGATACTTAGGGGAGCCTCAAAGG
TATGATTGCAGCCCAATTCGTGACGATGGTAGTCGAATGCGTCATACTTGATTAAGCCTGGTTAT
TATGTTGAAAGCTTTAGTATTAGGGTATCAACAAAACTATTTGAATACTTCTGACTAGAACACTA
CCTACAACATCAAAAGGCCAGCAATGGCGACAGCGCCGGCAGCAATGCCTCTCATATTGGCAACA
CCTTCCCACTCGAAATCAGGACCGGTGGTACCGTTAGTGGAGTTGAGGGCCGGAGGCAACTCAGT
AGGATAGTCAGGAATGGAGGGCTCTTCCTCGGTATCAGGAAGGTC
Right flanking sequence: Indices 78574 -- 79073
GGCTTGACCGACAAGCTGCTCAGCAGCGAGCTCGACCTGCCCGACAATGTCTTCGGCGTAAGCGT
CAGGAGTCTCAGGAATCTGATTTTCAATCTCCTCAGTAGCCTGTTCGGCAATGGCGTAAGCAGCG
TAAGCAACGATGGCAGTGGTAGAGAACTTCATGGTTTATTGGGCTTAGAAGACGGAGTTCCATGG
CCTTTTATAGCTACTAGAGTCAGGTCCGCTGACGAGGACGCGAGTCGATGCCTAACTATGTATGT
TTTGGCTGCAAATAAGTAGGAAAAATCGTCTAATTCTGGAGGTAAAAAATTACTGCTTGAAACCA
TTGTTTCTCATTTGGGGCAACGGGCTGGCAAGTCGTAGACTGTCATCTTCTCTACGGTTGGAGCA
TTTAATGCTCATCTTTGTTATTTTCGCTTGATGTTGTCCCCAGGACCCTGCAGCACCTCGCCAGT
GCATATCCGAAAGCGAGATCAACTTATCCAAAGCGGACAATCACC
Found at i:116724 original size:9 final size:9
Alignment explanation
Indices: 116710--116736 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
116700 AGTCTTCGAT
116710 GATCCTACC
1 GATCCTACC
116719 GATCCTACC
1 GATCCTACC
116728 GATCCTACC
1 GATCCTACC
116737 AACGAAGGAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.22, C:0.44, G:0.11, T:0.22
Consensus pattern (9 bp):
GATCCTACC
Left flanking sequence: Indices 116210 -- 116709
TTGGTTTTGCCATCTTTACATTGATCCGTTGTATACTCGCATCCGACGTCCTAAATCCGAGTTCA
GTAAGTCCTGCACGTGTCCTGACGCCTTATGTTAGGGGCTAACTCCAAGATGACAATATTGCTTA
AGCGAGCAGCCCTTTGCAAAAATCCTGCCTTGTGTGTACGCCGATCTGGTAAATGAAATCGAATT
GCAATTTAACCCGGGACTTAATATTTGGCTGTGTGCGATTCAAAACATGATTTACAACTTTTGGT
AAAAGAGGCATTGTCAATACGTCAATCACTCGTGCATAGGCGAAATAGGTCGAAAAGGCGTTGCG
GACTCGGTGCTAAGACTCTTCCTCCCCCGGAGAAGTGGAGTCAACGGCCCCGGGGGATCCTCTTT
AGCAAACAATAAGTGAAGTCTATCACCGTAAAATATCAGGGTTCCTATGCAGTTGGTATCGGATG
GAGACTAATGTCCGAGATTACTCGCCTATGATTTCAGTCTTCGAT
Right flanking sequence: Indices 116737 -- 117236
AACGAAGGAATAAAATGGATTGCGGTGATATTCCATCTTGTTATATGGCCCGAAGTGAGGAGGGA
TTTAATCATGAAGATGTGGACGAATTTCTTGCAAATCCGGCGTCAGTGTGATTGCGAGAGAGATC
GCGATAACAAGTCGCGCTGTGAGGTGATAATGCGGGGTATTAATTTTGGTACGAAAAGTCGACAA
GAACTGTGAAAGGTAGGCGATTCTTATGTGCTTAAAACCGGGCGGTTCTGTTGTTCGGGGTTTCG
GTAGATGGCATCTTAGGTGTGTACAGGTAGCTGTGAACACATGCCGGGGAACTACGTCAAATATC
CAATTTCAAGAGGTTGCACGATGTGTTGGGCTCTGCTTTCCATCCAGAGAAAGTAGTATTTTATA
CGTTTTCTTTGATGGGTTAACTTGAAAGACTTAAAATAGTTCACATCGAAGTCCGGCAACCTATA
CTACCCTGTGGGGGGGAAGTGGGGGTGGGGGTGTGGGGGAACTAG
Found at i:196450 original size:3 final size:3
Alignment explanation
Indices: 196442--196609 Score: 117
Period size: 3 Copynumber: 56.0 Consensus size: 3
196432 CAACCAAAAA
* *
196442 ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATA ATG ATG ATC
1 ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG
* * * * * * * *
196490 A-C ATCA ACG ACG ATG AAG ATG ATG AAG ATG ATA ATG ATG ATG AAG
1 ATG AT-G ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG
* * * * *
196535 AAG AAG ATG ATG ATG AT- AGTG ATG ATG ATG GTA ATG ATG ACG ATG
1 ATG ATG ATG ATG ATG ATG A-TG ATG ATG ATG ATG ATG ATG ATG ATG
* ** *
196580 ATTG -TA ATG ATG ACA ATG ATG ATG ACG ATG
1 A-TG ATG ATG ATG ATG ATG ATG ATG ATG ATG
196610 GTAAAAATAA
Statistics
Matches: 130, Mismatches: 29, Indels: 12
0.76 0.17 0.07
Matches are distributed among these distances:
2 4 0.03
3 122 0.94
4 4 0.03
ACGTcount: A:0.39, C:0.05, G:0.29, T:0.27
Consensus pattern (3 bp):
ATG
Left flanking sequence: Indices 195942 -- 196441
CACAGTTGCTCTGTCATTGCTAGCGCCAGCTCTGAAAAAGCCGAAGAACCCGTTCGAGAAAATGA
TCTTGCACAACGAGCTCCGCCGGTGGGCGGATATACTTGTGATCGCCCCGCTTCTGGCCAATTCG
TTAGCCAAAATTGCGAATGGTGTATGTGATAATCTTCTCACGCTGATTGTGCGCCTGTGGGGACC
AGTGACGACTAGTACGTCGGTTAAAAAACCGATAATGGTTGCACCGGCTATGAATACTTTCATGT
ACACGCATCCTATTACATCAAAGCAGGTCTCTACAATTCAGCTGAGCATTTTCGGTATCGAGGTG
CTCAAACCGATTGAGAAAGTTTTGGCTTGTGGTGATATCGGAATGGGGGGTATGAGAGAATGGCT
GGATATTGTCGACATAATGCGGCGTCGGATCACCGCTATAAAGGAAGAAAGGTTGGCGCTTGATG
GAGTAGAGGGTAACAGAAACGAAGATGATGCGGATCAACCAAAAA
Right flanking sequence: Indices 196610 -- 197109
GTAAAAATAACGATAACGGCGAGGGAAATGAGCTTATTGATTCAAACTCCAGCGACCGTGGCGAA
GCAATGGTTGAAGGTTCGCAGCTCAAATTCGATATTGGAGGCGAAGAAGAACGATTGGCGTCTCC
TGTTCCGCACACGCAAAACATTATATAGCATACATGGGATGGCAAGAGGTCAAATTGATTGGTTT
GTACCAATAGTAGTTGTATCATGAAAATTCCAGTCGCAATAGTGAGGATGTGAATTCCGAAATAG
ACAGGAAAGATGAATTCATGAAACGATTTTCTTATGAAAGCGAATTGGGTTACTCGCTGTCACTG
ATTTGTAAACTCTCAGGTCCTATAGAATACATGCGCCGTTGAGCTGGTCTGCACGAAATAGTGTG
GGATGACGTCACCCCGGAATTAATTCCCGATAAGTATGAGTTTCTCTTTGCTATTTATGTCATTT
CGAGAGCTTGGAAGATCGCGTTCACAGTCCATGCTGTGTGTTTCT
Found at i:198985 original size:24 final size:24
Alignment explanation
Indices: 198956--199021 Score: 75
Period size: 21 Copynumber: 2.9 Consensus size: 24
198946 GCCGCTGTCT
198956 CCAACTCCACTGGTGGTGCCGCCA
1 CCAACTCCACTGGTGGTGCCGCCA
* * **
198980 CTAACTCTACTGGTGGT---GTTA
1 CCAACTCCACTGGTGGTGCCGCCA
199001 CCAACTCCACTGGTGGTGCCG
1 CCAACTCCACTGGTGGTGCCG
199022 GCAAGAACGG
Statistics
Matches: 33, Mismatches: 6, Indels: 6
0.73 0.13 0.13
Matches are distributed among these distances:
21 17 0.52
24 16 0.48
ACGTcount: A:0.17, C:0.33, G:0.26, T:0.24
Consensus pattern (24 bp):
CCAACTCCACTGGTGGTGCCGCCA
Left flanking sequence: Indices 198456 -- 198955
GGCGCATAGTCACGTCCAAACTCGACATCCAAATCGAGTTTGGCCCACGCAGTTACCTCCAATGT
GTGTGGGTTTATTAAACAGTAGCTAAAATTTTTGATTCCAATGTCAATACCCGCTACGGGACCCT
CGGAAATCCGTGTAGCGAGTTTGATTGCATCAGAAATAGCTTCAGCAGTTGCAGCTTTTGTCGAG
CGAGCTGGTACCCCAGCAAGGGCAGCCACCTGCTTCAACGTCGTCGCCCTTAGAGCATTCATTTC
ATGTATCAGCGAACGGGGCGAAGCAAGAGTAAGATCTGTTGTTGATGGGGTTTATTTTTTCGCTG
TGAGTAATTTCGTGTATTTCTTTTTTTTTATTTTTAAACGCGCAGCTGCAGCTCAGGCGCTCTTG
ACACAGCCCCCCATGTATATAAAAGGGCGTCTTTTCTTGCACTATTCATCACTAATCAAAAATGA
AGTTCGCCACTGTTTTGTTCGCTGCCTCCGCTCTCGCCGCTGTCT
Right flanking sequence: Indices 199022 -- 199521
GCAAGAACGGCTCCAACGGTTCTGGTGACAAGGAGGGTAACGCTGCTGCCACTGTCGGTGCTGGT
GTTGCTGGTGTTGTCGCCGCTGTTGGTGCCGCCCTTTTGATTTAAGAGTTCACTTTTCAGTGTTA
CTTTTAGATAAAGGTTCTGAGTGTACTATAGCAGGTTCTATTTAATTAATTAATATCACTAATAT
TCAATCGCTCATCAATTGTAGAGATTTCGATGCCTATGGAGTATTTTCGTTTCTGTTCGAATGTT
ACCCATTCTAGTTAAGGGTGAGGGCTCCTGAAAAATCTGTGCATGCATTATGCAAGTTTGTAGAA
TCGTTTCAAGAAGCAGCCCATGATGGATGGCTGTCTTTAATGCTAAGAGATCGGTAAAACCCATA
TTCGTCGTTAATTTCCCTTAGATTTGGTACGTTTTGGCGGGTAATAGTTAGTATAAAGGTACACA
AATGATATGATTGACGTACTTAAAATTCATTGAGACTCGTCACGC
Found at i:261355 original size:12 final size:12
Alignment explanation
Indices: 261338--261363 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
261328 GAAATCATCA
261338 CTGCGGCCACTG
1 CTGCGGCCACTG
261350 CTGCGGCCACTG
1 CTGCGGCCACTG
261362 CT
1 CT
261364 CAAACCATTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.08, C:0.42, G:0.31, T:0.19
Consensus pattern (12 bp):
CTGCGGCCACTG
Left flanking sequence: Indices 260838 -- 261337
TCGATGCTGACACGCTGATACTGACTACGGAAGCGCTGTTAGAGCTGGTGAAAGAGCGACGGTTT
GCTATTTCCAAGCTTTTCGCGCGGCGTCCTGGGGACTCGGATGACTCTGATATCGACGACGGCCT
GATCCGAGCTCTTGATGACGACAACAATCTGGTTGCGGTAGCACTGCTTCATGACGATGCGACCG
TAAAAGCCCCTCCACTCCCTCGTCGCCGTCGGGTCCTGGATTTGCTGGTTGTATCTGACTTTGGT
GTTTTGGTTGACAAAGATGGTCGCGTAGTCCGCAAAATCACATCAGACGATGAATTCGAACTGGC
AGGAGAGGAAGAAAATGATGACTACGACGACGGTTATGATGATGATGCTTTACTGCTGCTGGACT
CTGCATTCACTGATATTGACGCACTGCTGATGATGCTGCTGCTGATGCTCCCCGAACTGTTCATC
GATCTGGGTACTTTTGACTATAGCAAACTGCGAAAGAAATCATCA
Right flanking sequence: Indices 261364 -- 261863
CAAACCATTAAAAGAAAAACTGACCGTGCTGTTGCGCAAACTGACGCTAACGTTTGAGAAAATGA
CGCCTAATGACGCTTCCACTACTTCAGCACTATCGCACATGATACAAGCTAAATTAAAACCCACT
GGCCATCCGCACCCCCTCTCGTACTACGCTTTTGTTGGAGAAGGAGCGCTGGCGATGGTCACCGT
ATTTGTACCAGATCACGATCGCATAGAGGTGCAAGTAAACGTGAACGCAGCGATTGCTGATTGCA
TTGGCTATATCTTGTGGTCACTCGTACGTGCAGAGGTGCCTGTTTCTTTAATCAATCCAAATCAA
TGGCAATTAGAGCTTGTTGATGAAGATGGCGAAGATTATGGTACCTTCGGCTTGCTTAACCGGAC
TAGGATTTTTTCACTGTACAATAACCCACCATATGTTGCAATTAAGCAGGCGCTGGCCGTCGATG
CGGCAACTAATGAGACTACAACTCCCTTGGCAATGGAGTATAAGG
Found at i:266183 original size:42 final size:42
Alignment explanation
Indices: 266124--266213 Score: 128
Period size: 42 Copynumber: 2.1 Consensus size: 42
266114 TGGCGCATCA
* *
266124 AAACTGTTCAATAGGAGGAATTGCAGGTATATGAACTATTCT
1 AAACTGTTCAATAGGAGGAATTGCAAGTATATGAACCATTCT
*
266166 AAACTGTTC-ATGGGGAGGAATTGCAAGTATATGAACCATTCT
1 AAACTGTTCAAT-AGGAGGAATTGCAAGTATATGAACCATTCT
*
266208 ACACTG
1 AAACTG
266214 CATAGAAGCA
Statistics
Matches: 43, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
41 2 0.05
42 41 0.95
ACGTcount: A:0.34, C:0.14, G:0.22, T:0.29
Consensus pattern (42 bp):
AAACTGTTCAATAGGAGGAATTGCAAGTATATGAACCATTCT
Left flanking sequence: Indices 265624 -- 266123
TGACTGGCTAACAATTGGTGATTTAGCTCGCTGAAGAGATTTCGGCGCCGTGGTTCAAAGTTTGC
CAAATTTGTCCGCGCGGGCTCTGGAACTGGGGGCAGGTTGGCAGTCGCCAGGATCAAAACTTGAG
GATTATCAAACTTCATACGAGGGTATGCAACGATAAACTCAAACTTCCAAGCAGCAATCCCGTTA
TAAGTAGTCATTTCGCTTACAATCGTATCATATATGCTGAAATGAGCGTTTGCATCATGGTCTCG
TCGATAAGTGGTGACGTGGTCCGCGGGTAGGATTGAGACATCTATGGAGATCAGCGAGTATTGTG
TTGTTGGGTCGGAGCAAGTAACATACCCCTGTACCACTTCATCGAAGAAACATATTCGCCGCAGA
CCGCTACCTATCGGAAGTACGATCTCGAGCGCCATAAGTTTCGCTCACGAAGTGTACGATCTGGT
TAGAAATTGGCGCGCAACGCGACTGATATCTCGCATGGCGCATCA
Right flanking sequence: Indices 266214 -- 266713
CATAGAAGCACATTTGGGTGAAATCCATCATGTATCGCTGCTACTGTTTTCGATCAATTTGAAAG
TTGGTGGAGCTCCAAAAGATGCGATAGTCCAACGCGAATGACTCTATAACGGGGAATAAGGTTCT
GGCCATATATTCCAAAACAGTGCACCCAGTTGTCAAATCGATAATGCAGATAGAAGCAAAAATAA
ATCGGAAATAGATTTTGGGGCTTGCCAGGAATCGAACCCGGGATCTCGTCCAATTTTAGCTCCCA
AAGGACGCGCCTTACCACTCGGCCACAAACCCAATGATACAAACTTTTTTTTGCACTTCAAGAGA
CTCCGCAAGTCTAAAATCCGTGAGGTATTCTAGGGAAATTTTGAGATTTAGAAAAGGGATCATAC
TTGAAACCTCTGAGAGGTTTGACTAAGCCTTACCACTGTGGCTTCGATGGATTAACGGTACCATA
AGGGCAAACCCTGTGTTTTTTATTTTTTATCAGATCTTACGTATC
Found at i:328279 original size:66 final size:66
Alignment explanation
Indices: 328187--328492 Score: 463
Period size: 66 Copynumber: 4.6 Consensus size: 66
328177 GTAAACTGAT
* *
328187 CTCAGGCTCTGTCGGTTCAGGGGCAGGCACCTCGGGCAAACTGACCTCAGGCTCAGTAGGAGGAA
1 CTCAGGCTCTGTCGGTTCAGGAGCAGGCACCTCAGGCAAACTGACCTCAGGCTCAGTAGGAGGAA
328252 G
66 G
* * *
328253 TTCAGGCTCTGTCGGTTCAGGAGCAGGCACCTCGGGCAAACTAACCTCAGGCTCAGTAGGAGGAA
1 CTCAGGCTCTGTCGGTTCAGGAGCAGGCACCTCAGGCAAACTGACCTCAGGCTCAGTAGGAGGAA
328318 G
66 G
* * **
328319 CTCAGGCTCAG-AGGAGCATGGAGCAGGCACCTCAGGCAAACTGACCTCAGGCTCAGTAGGAGGA
1 CTCAGGCTCTGTCGGTTCA-GGAGCAGGCACCTCAGGCAAACTGACCTCAGGCTCAGTAGGAGGA
328383 AG
65 AG
* * **
328385 CTCAGGCTCAG-AGGAGCATGGAGCAGGCACCTCAGGCAAACTGACCTCAGGCTCAGTAGGAGGA
1 CTCAGGCTCTGTCGGTTCA-GGAGCAGGCACCTCAGGCAAACTGACCTCAGGCTCAGTAGGAGGA
328449 AG
65 AG
328451 CTCAGGCTCTGTCGGTTCAGGAGCAGGCACCTCAGGCAAACT
1 CTCAGGCTCTGTCGGTTCAGGAGCAGGCACCTCAGGCAAACT
328493 AATGTCCGGC
Statistics
Matches: 224, Mismatches: 14, Indels: 4
0.93 0.06 0.02
Matches are distributed among these distances:
65 4 0.02
66 216 0.96
67 4 0.02
ACGTcount: A:0.25, C:0.27, G:0.33, T:0.15
Consensus pattern (66 bp):
CTCAGGCTCTGTCGGTTCAGGAGCAGGCACCTCAGGCAAACTGACCTCAGGCTCAGTAGGAGGAA
G
Left flanking sequence: Indices 327687 -- 328186
CACATGACCAAAGTCGTTAGAGATCGTGAGGTATTGGGTCCATTTCACTATTCGTGGTCGCCACT
GCGGCAATGGTTGGTAAAGTTTACGAAGTGAAGGAAAATTCATTAATTATAGTCCCTTTCCAAAA
TCACAAATTCAATTCGGCAAATTCAAAGGAGCGCAAAAGCAAGGGCTACAGCAACACCGGCAAAT
CCAACATTCTCTCTGAACCCGCAACCCTCCACAGGTGGTAGAGAGGGAACCATCAGCGAGTCAAA
CACTGATAAATCTGTGGTTACAGTCGTCTCAATTGTTTCAGCGGGTGGTTCCGTAGCACTTTCTT
CCGTTCCCACTGAAGGCTTTGTATTCGTTGTCTCAGGCGTGGAAACTTGCGGCGTGGAATTCAAC
GGAGGCACCACAGTAGGAACAGGCGAGGGGATTGGTTCAACAGTTGGTACAGGAGGCAAAGGAAT
GCTAGACATTCCAGGAGGTACCCCCGATGACTCAGGTAAACTGAT
Right flanking sequence: Indices 328493 -- 328992
AATGTCCGGCTTAGTTGGGGGGAGCGTTTGCTCGGGAGTAGGAATCTCAACTGTAGGTACTTCTG
GTTCAACCCCGGAATGAAATGAACCAGCAGAGACGATAACAGCGAGAGAGATAAAGGTAGCAAAC
GAGAAAATCATGTGGATGTATTGGCGATAATAGGTAAATGGAGCTTTATATATACCCTCACCCTG
CTATTAGTCTCAAATATCCAACAAGGCTCTAGTTTCCTTAGTTCTCGGCCCATGTGTCGCGCAAT
GTATATCGCTGCATTGGTTCAACCCACTCCTCGAGGTGCTTCATTGACGGGTGTGCGAAAGCCGA
TGAATGGCCTAAAAATAGCCAACCTCCAGTTTCCGTATGAGGTAGACAAATGCTAAACCCTCTAT
TTTGAAACAATAATCCCGAACCTTAGGCAATATCAACTTCCTACAAATCATCAACCAAAAGCCTG
CGAAGGGAAGGTGCCGGGAATGGGTACTGACAGTTCTTGTGCCAG
Found at i:364758 original size:87 final size:87
Alignment explanation
Indices: 364654--364825 Score: 209
Period size: 87 Copynumber: 2.0 Consensus size: 87
364644 CTTCGCCTGC
* * * * * * *
364654 GTCCTTAACCTTATCCTTCGCGTCGCTAGCCTTTTCCTTGGCATCTCCAGCAACCTCCTTGGCCT
1 GTCCTTAACCTGATCCTTAGCCTCGCTAGCCTTGTCCTTGGCATCACCAGCAACATCCTTCGCCT
*
364719 TATCCTTAGCGGCGCCCGCATT
66 TATCCTTAGCGGCACCCGCATT
* * * * *
364741 GTCCTTAACCTGGTCCTTAGCCTCGTTCGCCTTGTCCTTGGCGTCACCAGCGACATCCTTCGCCT
1 GTCCTTAACCTGATCCTTAGCCTCGCTAGCCTTGTCCTTGGCATCACCAGCAACATCCTTCGCCT
* *
364806 TCTCCTTAGCGTCACCCGCA
66 TATCCTTAGCGGCACCCGCA
364826 GCCTTCTTGG
Statistics
Matches: 70, Mismatches: 15, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
87 70 1.00
ACGTcount: A:0.12, C:0.39, G:0.18, T:0.31
Consensus pattern (87 bp):
GTCCTTAACCTGATCCTTAGCCTCGCTAGCCTTGTCCTTGGCATCACCAGCAACATCCTTCGCCT
TATCCTTAGCGGCACCCGCATT
Left flanking sequence: Indices 364154 -- 364653
TAGAGGTGTCTAGTAAGACCGACACTCTCAACGAACTTTTTGCCAGAGTCGCCCAGGTGGGTTCG
CGGGAACACGCGACGCGTCAAGCCGGCATTGACTTGTCCCGAGTTGTCGAAAGTAACTCGGGCAC
TCGATGCGCCTGCTAGTTTGATATTTCAGCTAGTGTATCATGTATCATTTAATATTTACGTCTAG
TTTTTGGACTCCGACTTCGGCTGGGCCGCGGACGTGTCGTCGTCATCTTCATACAATTCGTCCTT
GTAGTGGTCAGGGTGTCTCTTGAAGCACAGTCTCATGGTTTCAAACTTTTTAATGCAGTCAATGC
CCTTGGGCTCGGTTTCCAGGTACACGAAACACGAAAACGCTTCCTTGAACTCCTCACCGCAGGGA
CCATGGGCCATGCCACCAAGGCAAGGGCAGTCCCAGTTGATTTCGCCGGTCTCGGGGTCGTAGGC
TCCCTTCTGCTCAGCCTCTTCGGCCTTGCCCTTGGCTTCGCCTGC
Right flanking sequence: Indices 364826 -- 365325
GCCTTCTTGGCATCACCAGCAACATTCTGAGCCTTGCCCTTCGCATCGCCGGCCATGTCCTCAGC
CTTGCCCTTGGCCTCGCCAACTGCCTTCTTCGCGTCTCCGGCAACGTCGCCAGCAGTCTTCTCCG
CCTTGCCCACGACATCACCTGCAGCCTTCTTAGCATCGTCCACCACGCCAGAAACCGCCTCCTCG
GTGGACTTCTTGCCAGTGATAACATCCTTACCAGCACCAACCACCGTGTCCGTCGCCTTACCCTT
GACATCCTCAACTGCCTTGGTGGCGGTCTCCTTGGCATCCCCTGCGGACTCTACCGCCTTGTGGG
CAGCAGGAACAGCCGCCTTAACAATGTCCTTGCCAAGCTCGACCGCGTCGTTGAGGGAGTCTTTG
GTGAAGTCAGCAGCACGCTTGTTGACAGCGTTGTACGCGCCAATCGAAGCGCCCACGACGTTGCT
CGAACCGTCAAAGGACTCAATGACATCGTTGATGGCACCCGAAGC
Found at i:367626 original size:15 final size:15
Alignment explanation
Indices: 367606--367638 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
367596 CCCGAGCTCC
367606 CCACCAAGCCCACCA
1 CCACCAAGCCCACCA
367621 CCACCAAGCCCACCA
1 CCACCAAGCCCACCA
367636 CCA
1 CCA
367639 ACATACCGAG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.33, C:0.61, G:0.06, T:0.00
Consensus pattern (15 bp):
CCACCAAGCCCACCA
Left flanking sequence: Indices 367106 -- 367605
CCCGGCTTGTTGGCGATGATTGAAATCACAACAACTAACGTCCAAGCGGACCTGGACTTATTCCA
GACGGTGGTGCGGTTTCTTTCCCATTTTATTGGCAAGTTGTTGTGCGGATGGGTGTGGGTGCTTG
GTCTTTTGATTGGCTCGTTAATCAGATCTACCTACAAGTGGGGTTACTTCACCTTTGCTGCCGTG
GGTCAGCTTGTAGGCATCATCCTTATTGGCTGGCGCATGTACCGCTCCTGGAGTGCTGTGGGCAC
CAGAGGTAAGGTTTGGTTGTGCAACTTGGTTATTCTTTTGTGGTTTGTGGTCTGGCTTCTCCAGA
CTATTGCTTGGGGTTGTTCTGAGGGTGGTAACCGCATCCAACCGACCTCAGAGGCCATCTGGTAC
GGTGTCAGCGACATTGTTGGCTTTGGTATCATTCCAATTCTTATGGCTTGGCTTTTATCTGGTGC
TATTGACGACGGCGTCTTCACCAAGTTCACTGCCGCCCGAGCTCC
Right flanking sequence: Indices 367639 -- 368138
ACATACCGAGAAGGTGAACGACAACGGGGTTGATGAGACTCCCCGTGCTTCTGGTGACACTGAGG
TACCAGTCGAGAACAGCGTTTAATTAATGTTTGATTTCTAATCTCGGATAGTTTTCGTATTTCGT
GAATTACTATGTACATGGTTTACTTTCTCACATCTCTGAAGTCCTTGATCTCATCAATTTCCTCG
ATGTCGGGCTCCAGCACATACTTCAGTGCCAATATCAAGGACACGACTGCGACTCCAATGCTACC
CACTCCGAGCCGGCGAATAGTACGCATTGTCTTCTGGGACTCCTCGGTTGTCTCGTCACCAATTT
TGCGGAAATGGGCATCGACCTCTTTGATCTTTGATTTCACACCACCGGTGGGCATCAGCTGGAAG
CGTTTACACACCAAAATCAGACCCCGGCGGATCATAGGGTTCATCATTGTGGCCTGCACTAAAAA
TTTGGGTGCGTCGATCGAGTATATGAAGTGCGTGAGACCAACGTT
Found at i:391429 original size:13 final size:13
Alignment explanation
Indices: 391397--391575 Score: 234
Period size: 13 Copynumber: 14.4 Consensus size: 13
391387 CCTACAAACT
391397 CATTGGTCTCACATC
1 CATTGGTCTCAC--C
391412 CATTGGTCTCACC
1 CATTGGTCTCACC
391425 CATTGGTCT----
1 CATTGGTCTCACC
391434 CATTGGTCTCACC
1 CATTGGTCTCACC
391447 CATTGGTCTCACC
1 CATTGGTCTCACC
391460 CATTGGTCTCACC
1 CATTGGTCTCACC
*
391473 CATCGGTCTCACC
1 CATTGGTCTCACC
391486 CATTGGTCTCACC
1 CATTGGTCTCACC
*
391499 CATTGATCTCA-C
1 CATTGGTCTCACC
391511 CATTGGTCTCACC
1 CATTGGTCTCACC
*
391524 CATCGGTCTCACC
1 CATTGGTCTCACC
*
391537 CATTGTTCTCACC
1 CATTGGTCTCACC
391550 CATTGGT-T----
1 CATTGGTCTCACC
391558 CATTGGTCTCACC
1 CATTGGTCTCACC
391571 CATTG
1 CATTG
391576 ACCCCTTCCC
Statistics
Matches: 146, Mismatches: 8, Indels: 22
0.83 0.05 0.12
Matches are distributed among these distances:
8 7 0.05
9 10 0.07
12 12 0.08
13 105 0.72
15 12 0.08
ACGTcount: A:0.16, C:0.36, G:0.15, T:0.32
Consensus pattern (13 bp):
CATTGGTCTCACC
Left flanking sequence: Indices 390897 -- 391396
GGTTTGCTGTCCTGCGGGGTATGCTCGCAGTGAAACGGTCACAGCGTTTGTAACGCCTCTGATAT
CGCGTGCCAACGCCGTATGCGCATCCCAATCCAGTAATTTTCTGTGGCCACCACCGGCACACTGG
ATCTGGGGGGATCGAGCCATTGTCGCGTGCATGGATTGGCAGGGAGCCATTGACGCTCGGGCTAA
AGGAGCCCCACTAAACCTAATGCCTCTGCGTGCGAACGCGGGTGCAACCCGTAGCGCAACCCTAT
GGCCGAAACAAGTAGCCTGCGCGGTCAACCGTGGGAAGGTCGCCAGCCAGTAAGAAACTTGCCAG
TCCCGGTGACACAACCCGAAAGGTGAATCAGGACCAGTCCGGCCAGCCTACTAGTGGACCCAATG
GTGACCACAACCCCTAGCGTACCCATTTGCACCACCACCCTACAAACCAACCCGACACACCCACC
TACAAACCCACCAAACAAATCCACCTACGCACCTACCTACAAACT
Right flanking sequence: Indices 391576 -- 392075
ACCCCTTCCCCCTTCGCACTGTTTGTCCCACGGGCGCAACCCGAGTCAACCAATAAACGCAGCAC
GTGACGAGTTTTTCCGGCGGGATGTGACGTTGTAGAAAGTGGGCGCCGCCGCCACCGCCACCCAC
CCCGTAGACCCGGCGACCACCGGCGGCTCCACCACCGCCACCGCCACGGGCACCGCCCGCCACCC
CCACGTTCCATTGGCTCGTCACCGCCAGGTTCGCACCAGAAAAATAGAAAAATCCCTCCGCAAAA
GTGTCATCAATAGAGCGAGCGGGGCATATGAGTAACGAAGACACGGGGAGTACCACCCCCGCCGC
CGCCCGCCCGGCTCCGCAGGAGGTGTTCAGTGGCGGCGCCACCACGTCGCAGCACGTGGACGCCC
ACGACGACGAGCACTTCGAAAACACCACCTTCAAGCTCAAACGCACCCGGTCGCTCGGGTTGTTG
GACGAGTTCATCGACCCGGACAAGCAGGCGGAGCGGATCGAGGAC
Found at i:391534 original size:51 final size:51
Alignment explanation
Indices: 391397--391573 Score: 235
Period size: 51 Copynumber: 3.5 Consensus size: 51
391387 CCTACAAACT
*
391397 CATTGGTCTCACATCCATTGGTCTCACCCATTGGTCT----CATTGGTCTCACC
1 CATTGGTCT--CA-CCATTGGTCTCACCCATCGGTCTCACCCATTGGTCTCACC
391447 CATTGGTCTCACCCATTGGTCTCACCCATCGGTCTCACCCATTGGTCTCACC
1 CATTGGTCTCA-CCATTGGTCTCACCCATCGGTCTCACCCATTGGTCTCACC
* *
391499 CATTGATCTCACCATTGGTCTCACCCATCGGTCTCACCCATTGTTCTCACC
1 CATTGGTCTCACCATTGGTCTCACCCATCGGTCTCACCCATTGGTCTCACC
391550 CATTGGT-T---CATTGGTCTCACCCAT
1 CATTGGTCTCACCATTGGTCTCACCCAT
391574 TGACCCCTTC
Statistics
Matches: 118, Mismatches: 5, Indels: 11
0.88 0.04 0.08
Matches are distributed among these distances:
47 16 0.14
48 24 0.20
50 10 0.08
51 45 0.38
52 23 0.19
ACGTcount: A:0.16, C:0.37, G:0.15, T:0.32
Consensus pattern (51 bp):
CATTGGTCTCACCATTGGTCTCACCCATCGGTCTCACCCATTGGTCTCACC
Left flanking sequence: Indices 390897 -- 391396
GGTTTGCTGTCCTGCGGGGTATGCTCGCAGTGAAACGGTCACAGCGTTTGTAACGCCTCTGATAT
CGCGTGCCAACGCCGTATGCGCATCCCAATCCAGTAATTTTCTGTGGCCACCACCGGCACACTGG
ATCTGGGGGGATCGAGCCATTGTCGCGTGCATGGATTGGCAGGGAGCCATTGACGCTCGGGCTAA
AGGAGCCCCACTAAACCTAATGCCTCTGCGTGCGAACGCGGGTGCAACCCGTAGCGCAACCCTAT
GGCCGAAACAAGTAGCCTGCGCGGTCAACCGTGGGAAGGTCGCCAGCCAGTAAGAAACTTGCCAG
TCCCGGTGACACAACCCGAAAGGTGAATCAGGACCAGTCCGGCCAGCCTACTAGTGGACCCAATG
GTGACCACAACCCCTAGCGTACCCATTTGCACCACCACCCTACAAACCAACCCGACACACCCACC
TACAAACCCACCAAACAAATCCACCTACGCACCTACCTACAAACT
Right flanking sequence: Indices 391574 -- 392073
TGACCCCTTCCCCCTTCGCACTGTTTGTCCCACGGGCGCAACCCGAGTCAACCAATAAACGCAGC
ACGTGACGAGTTTTTCCGGCGGGATGTGACGTTGTAGAAAGTGGGCGCCGCCGCCACCGCCACCC
ACCCCGTAGACCCGGCGACCACCGGCGGCTCCACCACCGCCACCGCCACGGGCACCGCCCGCCAC
CCCCACGTTCCATTGGCTCGTCACCGCCAGGTTCGCACCAGAAAAATAGAAAAATCCCTCCGCAA
AAGTGTCATCAATAGAGCGAGCGGGGCATATGAGTAACGAAGACACGGGGAGTACCACCCCCGCC
GCCGCCCGCCCGGCTCCGCAGGAGGTGTTCAGTGGCGGCGCCACCACGTCGCAGCACGTGGACGC
CCACGACGACGAGCACTTCGAAAACACCACCTTCAAGCTCAAACGCACCCGGTCGCTCGGGTTGT
TGGACGAGTTCATCGACCCGGACAAGCAGGCGGAGCGGATCGAGG
Found at i:392996 original size:3 final size:3
Alignment explanation
Indices: 392988--393018 Score: 53
Period size: 3 Copynumber: 10.3 Consensus size: 3
392978 CTTGGACCTG
*
392988 GAC GAC GAC GAC GAC GAC GAC GAC GAG GAC G
1 GAC GAC GAC GAC GAC GAC GAC GAC GAC GAC G
393019 GCGGGTTCTT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.32, C:0.29, G:0.39, T:0.00
Consensus pattern (3 bp):
GAC
Left flanking sequence: Indices 392488 -- 392987
GCCAGCGCACGGCGACGCTGAAGGTGGCGGGCGACATCCTGTTGCCGCGGCAGTCGCCCAAGGAG
CTCAAGCCCATCCTCAAGCGGCGCACCGCCGCCCAGCTGATCATCCTGCACTCCAACTTGCTCAA
GCTCGAGCTCGTCACCAACAAAATGTACCAGCAGCAGCGGCAGGAGTACCAGCAGCGGGTGGCGG
CGATGAAGAACGCGCCCAAGCCCGAGTTCTTTGACTACGACGCCATCCTGGGCCGCCTCAACAAA
CAGTACCACCAGGCGGCGGGCCCGCTGCTGAACTCGCTGCTCACGCGCATCCAGGAGCTACTAAA
CAAACCCAAGCCGCCGGCGGTGCCCGAGGCGCCGGCCGAGCCGCGGGCGCCGCTGGAGGCGCTGG
CGCCGCGGCACATCCGCTTCAACGAGCTGGTGGAACAGTGCCAGGCGGTGGACGGGTACCTGGAC
GACGAGTTCCGCGGGCCCGCCACCCAGGCGATCTACTTGGACCTG
Right flanking sequence: Indices 393019 -- 393518
GCGGGTTCTTTTTGTCGGTGCGGCCGCTGGGAGGCATGGTGGCCGGGGTGGGTCCTCCCTCCGAC
CTGGAGCTGGAGCGGCTGGAGGCCACCCTGGGGCTGCGGCGGCTGCTGGTGCAGACCATCCAGCG
GTTGGCGCCCACCACCATCAACTACGGGCTGCTGGAGGAGGAGCTGGACGACGACAACCCCTACA
CGCTGCTGATGAGCCACAACGCGCTGGAAAACCGCGGGTACGACTACTACTACGACTACAACCGG
GTCTACACCAACGACTTGGCCGGCGTCAAGACCCCCGAGGTGGTGGACATCCCCGAAAGCCTCAA
CTTGGAGTACGAGGACGAGGCGATGCCCCCGTTGGCGCTGCCGGTGGTGCTGCCGGTGGTGATGC
CCTCGCGCCCGGCGCCGCTACCGCAGGACCCGGACTCCGCCCTGGACTCCGACGACGGCCTTTCC
ATATCTGCGCCCAACTCGTCCAAGGACTTGGCGCAGCTGGTGTTT
Found at i:393397 original size:12 final size:12
Alignment explanation
Indices: 393380--393409 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
393370 CCCCGTTGGC
393380 GCTGCCGGTGGT
1 GCTGCCGGTGGT
393392 GCTGCCGGTGGT
1 GCTGCCGGTGGT
*
393404 GATGCC
1 GCTGCC
393410 CTCGCGCCCG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.03, C:0.27, G:0.47, T:0.23
Consensus pattern (12 bp):
GCTGCCGGTGGT
Left flanking sequence: Indices 392880 -- 393379
CCGCGGCACATCCGCTTCAACGAGCTGGTGGAACAGTGCCAGGCGGTGGACGGGTACCTGGACGA
CGAGTTCCGCGGGCCCGCCACCCAGGCGATCTACTTGGACCTGGACGACGACGACGACGACGACG
ACGAGGACGGCGGGTTCTTTTTGTCGGTGCGGCCGCTGGGAGGCATGGTGGCCGGGGTGGGTCCT
CCCTCCGACCTGGAGCTGGAGCGGCTGGAGGCCACCCTGGGGCTGCGGCGGCTGCTGGTGCAGAC
CATCCAGCGGTTGGCGCCCACCACCATCAACTACGGGCTGCTGGAGGAGGAGCTGGACGACGACA
ACCCCTACACGCTGCTGATGAGCCACAACGCGCTGGAAAACCGCGGGTACGACTACTACTACGAC
TACAACCGGGTCTACACCAACGACTTGGCCGGCGTCAAGACCCCCGAGGTGGTGGACATCCCCGA
AAGCCTCAACTTGGAGTACGAGGACGAGGCGATGCCCCCGTTGGC
Right flanking sequence: Indices 393410 -- 393909
CTCGCGCCCGGCGCCGCTACCGCAGGACCCGGACTCCGCCCTGGACTCCGACGACGGCCTTTCCA
TATCTGCGCCCAACTCGTCCAAGGACTTGGCGCAGCTGGTGTTTGGAATGACGTCACACTTCCCC
GACACCGCGCCGCACCCGGTGGAGGCGCCGGTGGCGCTGATCAACCCCAACTCGCTGACGGCGCT
GCTCTCGAAGCAGCCGCGCTCGCTGGGGCTGTTGGCGGCGTCGTTCTTTGGCGACGGCGAGCCCC
CACGCTCGCAGTTGCTGTCGTTGTTCTTGGGAGACACCGCGCCTCCGTCGCCGCCGTCGGTGCCG
ATGCCGCCGCACGCAGGCCTCCCGCGGCAGAAACTGGGGTTCTTGTTTGACCTGGAGCTGGATCT
GGACGAATAGATGCATATATAGACCATTAACGAAGCGAAGACCACATCGGCATGCCGACACCGGC
AACGGTGCCTGTGCCGCCGTTGTCGTAAGCGAGCCACAATGCACC
Found at i:394336 original size:14 final size:15
Alignment explanation
Indices: 394314--394342 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
394304 CTACCCGCGA
394314 GCCACGCCAGCCACC
1 GCCACGCCAGCCACC
394329 GCCA-GCCAGCCACC
1 GCCACGCCAGCCACC
394343 CCGTAGCCAC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.21, C:0.59, G:0.21, T:0.00
Consensus pattern (15 bp):
GCCACGCCAGCCACC
Left flanking sequence: Indices 393814 -- 394313
ATATATAGACCATTAACGAAGCGAAGACCACATCGGCATGCCGACACCGGCAACGGTGCCTGTGC
CGCCGTTGTCGTAAGCGAGCCACAATGCACCGCCAGGGGAACAATGCGCGTAGGAGCCTTGGCGT
TCCAGGTGGTTCCGAGGGGGGACACCGTAAGCGGCGTAAGCGGTGGCTTAACCACCAGCACAGTT
GGCGACCGCTGCCAGGCCCGGCAGAAAATGTCTGCGGAGCACCCCAGTGTCCGACATCTGACGAT
ATCACCAGATGCTCCCCACCGCCGCGTGACTCGTATATCCACCCGCAAAACGCGGCAGGGCGAGG
CGAGAGCGGGGAACGGCACCGCGGCAGCAGTGGTACGGGCCAGCGTCGTGGCCACGGTGGCAGTC
CGCAGTGGTCCGCGCCCGCTCCGCCCGCTGGCTGGCCGCCGGCGCCCGCTGGCATTGTGTCACCG
CCAATTGTGGGGTCACCCCGGACGCGGCGCCGCCACTACCCGCGA
Right flanking sequence: Indices 394343 -- 394842
CCGTAGCCACCCGGGCGGCCGCGGGCCCGTAACTGTCGGCCGCCGCACCTGCCCCTTACGCCGAC
GGTTGGCCGCTGACTCCGGTAGCCTCGCGGAGTGCGCATAGTCATCGCGCCTGTTTTTCCCGATC
CTCCCCACCTCAGTGCCGACACGAGATGAACGAGGAGCCCCCCGCGCTGGGCGAGCCCATTGGCA
AGCAGAAGCGCACCAACGTCGCGTGTATCCGGTGCCGGCTGCGGCACATCCGGTGTCCCGGCGGA
GATCCGTGTAAGAAGTGCTCGTTGGCCCGTGCCAAGTGCGAGTACGTGGAAGGGGAAAAGAAGAT
CGTGGTGCTGATGAAGTACCTCCTGCGGCTCCACGACGACATCGCCCGGCTCAAGAAGGAGAACG
CCGGGTTGCGCCACCAGTTGCAGGAGCTGCCGCAGCACACCACCCCCGGGGCACCGGCAAAGCCC
GAGCCACCCGAGGTGATCGACCCCCACCAGGGCGAGGTCATCACC
Found at i:397471 original size:12 final size:12
Alignment explanation
Indices: 397454--397478 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
397444 TGGTTTTGAG
397454 GGAGCTGGTCTC
1 GGAGCTGGTCTC
397466 GGAGCTGGTCTC
1 GGAGCTGGTCTC
397478 G
1 G
397479 TCTTTGGTGG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.08, C:0.24, G:0.44, T:0.24
Consensus pattern (12 bp):
GGAGCTGGTCTC
Left flanking sequence: Indices 396954 -- 397453
TGTTGCAGCTGCTGCTGTTTGTATTGGTTGATTTTCATCTTGAGGTACTGCACGGCCTCGGGGTA
CAACTCCTGGAGCTTGTTGTACAACGGCGTCAACTCTTGCATGTCGGGCGGCGGCAGGATGATCA
AGGGGAACTTGACTTTGTTGCCCGAGTTGGGGTCGCCGTGGTACCGGTCGTGTATGTACAGCAAC
ACCCCCAAGTTGCAGTGGATCCGCCGGGTGTACTGCTGGTACTGCTCCATCATTTGCTGGCGGTC
GGGCGCCTGCATCTGCGAGAGCGCCTTGGGATTTAGCAACACGTTGTTGTACACCTGGAGCGCCT
TCTTGATCAACTGGGTGTTGATGAGAAGCAAGCACGTGGTGCGTTCTCGGTCGATTTCCAACTCC
GACTTCATGGTGGTGGTATTTGTTTTTCAGTCGCAGTTTCAGGTGGTGACCTGCGTGGAGAGCGA
ACGGGCTAGGACACACGGCGCAAGCAATTGGGAGATGGTTTTGAG
Right flanking sequence: Indices 397479 -- 397978
TCTTTGGTGGGTGGTGTTTGGGTGGTGCTGGGTGGTGTTGGCCGTGCAACCGTGGCAATGCCCTG
TGGCGAACACGGGTACGATGCAAGAGAAGAGCCCGCAGGAATGTGGAGAATGAGCGGGGCTCGCT
TACGACGGTGACAGCCGAGACACGGTAGGCTATTTCGGGAGAGTATGCGTTTGGAGGCACAGATG
ATGGGCGCCGTCAAAGGTGCGTTGCAGGTGGGACGATAATTTGACGCGTGCCAAGGCGGTAGACG
GGGCTGTAGACACCCTGGGTGCGTGCTGTTGGGACCAGTGGCTCCTCACCTTTACTGCTATTTGT
TCAATTTCTGCAAAAATCGTAGTTTTGGCGTGGCGATCGACAACGCAACCTCCAGATCCTGGGGT
ATCAGACTCTGGATGTAGTAGGCGGTCGCGATGGCTGCGATAGCGCTCCCTTATCGTATTCTCCT
CCAAATAAGGTATGCCTACACCACAAACACCACACCCACCACATC
Found at i:397975 original size:18 final size:18
Alignment explanation
Indices: 397952--397991 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
397942 GGTATGCCTA
397952 CACCACAAACACCACACC
1 CACCACAAACACCACACC
** *
397970 CACCACATCCACCACGCC
1 CACCACAAACACCACACC
397988 CACC
1 CACC
397992 TCATCTACAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.35, C:0.60, G:0.03, T:0.03
Consensus pattern (18 bp):
CACCACAAACACCACACC
Left flanking sequence: Indices 397452 -- 397951
AGGGAGCTGGTCTCGGAGCTGGTCTCGTCTTTGGTGGGTGGTGTTTGGGTGGTGCTGGGTGGTGT
TGGCCGTGCAACCGTGGCAATGCCCTGTGGCGAACACGGGTACGATGCAAGAGAAGAGCCCGCAG
GAATGTGGAGAATGAGCGGGGCTCGCTTACGACGGTGACAGCCGAGACACGGTAGGCTATTTCGG
GAGAGTATGCGTTTGGAGGCACAGATGATGGGCGCCGTCAAAGGTGCGTTGCAGGTGGGACGATA
ATTTGACGCGTGCCAAGGCGGTAGACGGGGCTGTAGACACCCTGGGTGCGTGCTGTTGGGACCAG
TGGCTCCTCACCTTTACTGCTATTTGTTCAATTTCTGCAAAAATCGTAGTTTTGGCGTGGCGATC
GACAACGCAACCTCCAGATCCTGGGGTATCAGACTCTGGATGTAGTAGGCGGTCGCGATGGCTGC
GATAGCGCTCCCTTATCGTATTCTCCTCCAAATAAGGTATGCCTA
Right flanking sequence: Indices 397992 -- 398491
TCATCTACAACACCCCCACCATACCACCCCTCCACCCACACCCTACGCCTCCCACTCACCACGCC
CTGGACCGCCACCGCCCGCCGCAGCCGCCACGGCCCGCTCCGCAACACCCCTCCCCTATTTGTGC
GAAATCGCGCCCTGCACAAGCACCGCAATTTATTGACACCACACCATGGACGAGAACTACGACGT
AATTGTATTGGGCACCGGGCTCACCGAATGCATCCTCCTGGGTCTTCTCTCGGTGGACGGCAAGA
AGGTGCTCCACATCGACCGGCAGGACTTCTACGGCGGCGAGCTGGCGTCGCTCAACCTCTCGCAG
TTGTACCTGAAGTTCAAGCCACTGGGCCAGAAGCCGGAGTTGTCGGGCCGCGACCGCGACTGGTG
TGTCGACTTGATTCCCAAGTTCTTGATGGCCAACGGCGAATTGACCAACATCCTTGTCCACACCA
ACGTCACCCGCTACATCGAGTTCAAGCAGATCGGGGGGCTGTACG
Found at i:397996 original size:18 final size:18
Alignment explanation
Indices: 397961--398010 Score: 57
Period size: 18 Copynumber: 2.8 Consensus size: 18
397951 ACACCACAAA
397961 CACCACACCCACCACATC
1 CACCACACCCACCACATC
* *
397979 CACCACGCCCACCTCATC
1 CACCACACCCACCACATC
* *
397997 TACAACACCC-CCAC
1 CACCACACCCACCAC
398011 CATACCACCC
Statistics
Matches: 26, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
17 3 0.12
18 23 0.88
ACGTcount: A:0.30, C:0.60, G:0.02, T:0.08
Consensus pattern (18 bp):
CACCACACCCACCACATC
Left flanking sequence: Indices 397461 -- 397960
GTCTCGGAGCTGGTCTCGTCTTTGGTGGGTGGTGTTTGGGTGGTGCTGGGTGGTGTTGGCCGTGC
AACCGTGGCAATGCCCTGTGGCGAACACGGGTACGATGCAAGAGAAGAGCCCGCAGGAATGTGGA
GAATGAGCGGGGCTCGCTTACGACGGTGACAGCCGAGACACGGTAGGCTATTTCGGGAGAGTATG
CGTTTGGAGGCACAGATGATGGGCGCCGTCAAAGGTGCGTTGCAGGTGGGACGATAATTTGACGC
GTGCCAAGGCGGTAGACGGGGCTGTAGACACCCTGGGTGCGTGCTGTTGGGACCAGTGGCTCCTC
ACCTTTACTGCTATTTGTTCAATTTCTGCAAAAATCGTAGTTTTGGCGTGGCGATCGACAACGCA
ACCTCCAGATCCTGGGGTATCAGACTCTGGATGTAGTAGGCGGTCGCGATGGCTGCGATAGCGCT
CCCTTATCGTATTCTCCTCCAAATAAGGTATGCCTACACCACAAA
Right flanking sequence: Indices 398011 -- 398510
CATACCACCCCTCCACCCACACCCTACGCCTCCCACTCACCACGCCCTGGACCGCCACCGCCCGC
CGCAGCCGCCACGGCCCGCTCCGCAACACCCCTCCCCTATTTGTGCGAAATCGCGCCCTGCACAA
GCACCGCAATTTATTGACACCACACCATGGACGAGAACTACGACGTAATTGTATTGGGCACCGGG
CTCACCGAATGCATCCTCCTGGGTCTTCTCTCGGTGGACGGCAAGAAGGTGCTCCACATCGACCG
GCAGGACTTCTACGGCGGCGAGCTGGCGTCGCTCAACCTCTCGCAGTTGTACCTGAAGTTCAAGC
CACTGGGCCAGAAGCCGGAGTTGTCGGGCCGCGACCGCGACTGGTGTGTCGACTTGATTCCCAAG
TTCTTGATGGCCAACGGCGAATTGACCAACATCCTTGTCCACACCAACGTCACCCGCTACATCGA
GTTCAAGCAGATCGGGGGGCTGTACGTGTACCGCGGGGGCAAGAT
Found at i:399605 original size:35 final size:36
Alignment explanation
Indices: 399563--399656 Score: 108
Period size: 33 Copynumber: 2.7 Consensus size: 36
399553 CTGATGCGAA
399563 ATGTAGTCGATAGAGTCTAAGGGACAA-CCCGCTGG
1 ATGTAGTCGATAGAGTCTAAGGGACAACCCCGCTGG
* *
399598 ATGTAGTCGATAGA----ACGTGAACAACCCCGCTGG
1 ATGTAGTCGATAGAGTCTAAG-GGACAACCCCGCTGG
*
399631 ATGTAGTCTATAGAGTGCTAAGGGAC
1 ATGTAGTCGATAGAGT-CTAAGGGAC
399657 GAGACCGGTA
Statistics
Matches: 47, Mismatches: 5, Indels: 12
0.73 0.08 0.19
Matches are distributed among these distances:
31 2 0.04
32 5 0.11
33 21 0.45
35 14 0.30
37 3 0.06
38 2 0.04
ACGTcount: A:0.30, C:0.19, G:0.30, T:0.21
Consensus pattern (36 bp):
ATGTAGTCGATAGAGTCTAAGGGACAACCCCGCTGG
Left flanking sequence: Indices 399063 -- 399562
CGCCATGTGTATCCTCGACCACCCGGTGCCCAACACCCACGAGTTGGACCTGGTGCAGATCATCA
TCCCCCAGAACCAGGTGGGGCGCAAGAACGACATCTACATCGCCGCGGTGTCGCTGGTGCACTGC
GTGGTGCCCAAGGGGTACTACCTTGCGATTGTCCTGACCATCATCGAGACCGACACCCCCCACGT
GGAGTTGGAGCCCGCGTTCAAGCTCTTGGGCCCGCGTGTCGACACGTTGATGGGGATTGCCGACT
TGTACGAGCCCAAGGACGACGGCACCAAGCTGGGGATCTACTTGCTGAAGCTGTACGACGCCACC
TCGCACTTTGAGTCCACCACCGACGACGTCAAGGACTTGTACTTCCGCATCACGGGATCGCCGTT
GGTGTTGAAGCAGCGCCCCACCGAGGAGGAGGAGTTGAACGCGTCGTAACTGTGTATCGAATGAA
CAACCCGGGATGTAGTCTAGAGTGGGGCGTGAACCCTGATGCGAA
Right flanking sequence: Indices 399657 -- 400156
GAGACCGGTAGTGGTGAATGATTTGGTCCTGTATGCGAGTTGATAAATCACGTGGAGAGAAAGAG
AGAGAAACAGAGAAAGGAAGAGAACGAGAGAAAGAACGGGAATAGAGGGAAGAAGAAGGAAGAAA
AAGGAGTGAGGAATAAGTACTAAAGTAAGATCATGTGTAGTGGGATTGAAATATGAGTTATTGGT
AGATATCCACCGTACACTATCCATACTACCCAGTACGCTGCGAAATGTAGTCTATCGTAGGGACG
CGCCCTGTTTGTATTAGCTGCTACTTCTTGGTGCGCTTCGACTTCCACCAGTCAAAGTCGATCAA
CGCCTGCATGCACCCCCACTCGGTGATTTTGTTTTGCAACCACACCAAGTTGACGGGCTTGGTCA
AGTAGTCGTTGCACCCGGCCATCAACGCGTTCTGCCGGTCCACCAGCGAGTTCAGCAGCGCCGTG
AGCGCAACGATGATCACCGGCGCCCGGAACAAGTTGAGGTCCAAC
Found at i:399735 original size:18 final size:19
Alignment explanation
Indices: 399711--399756 Score: 62
Period size: 18 Copynumber: 2.5 Consensus size: 19
399701 AAATCACGTG
399711 GAGAGAAAGAG-AGAGAAAC
1 GAGAGAAAGAGAAGAG-AAC
399730 -AGAGAAAG-GAAGAGAAC
1 GAGAGAAAGAGAAGAGAAC
399747 GAGAGAAAGA
1 GAGAGAAAGA
399757 ACGGGAATAG
Statistics
Matches: 24, Mismatches: 0, Indels: 6
0.80 0.00 0.20
Matches are distributed among these distances:
17 4 0.17
18 20 0.83
ACGTcount: A:0.59, C:0.04, G:0.37, T:0.00
Consensus pattern (19 bp):
GAGAGAAAGAGAAGAGAAC
Left flanking sequence: Indices 399211 -- 399710
TACCTTGCGATTGTCCTGACCATCATCGAGACCGACACCCCCCACGTGGAGTTGGAGCCCGCGTT
CAAGCTCTTGGGCCCGCGTGTCGACACGTTGATGGGGATTGCCGACTTGTACGAGCCCAAGGACG
ACGGCACCAAGCTGGGGATCTACTTGCTGAAGCTGTACGACGCCACCTCGCACTTTGAGTCCACC
ACCGACGACGTCAAGGACTTGTACTTCCGCATCACGGGATCGCCGTTGGTGTTGAAGCAGCGCCC
CACCGAGGAGGAGGAGTTGAACGCGTCGTAACTGTGTATCGAATGAACAACCCGGGATGTAGTCT
AGAGTGGGGCGTGAACCCTGATGCGAAATGTAGTCGATAGAGTCTAAGGGACAACCCGCTGGATG
TAGTCGATAGAACGTGAACAACCCCGCTGGATGTAGTCTATAGAGTGCTAAGGGACGAGACCGGT
AGTGGTGAATGATTTGGTCCTGTATGCGAGTTGATAAATCACGTG
Right flanking sequence: Indices 399757 -- 400256
ACGGGAATAGAGGGAAGAAGAAGGAAGAAAAAGGAGTGAGGAATAAGTACTAAAGTAAGATCATG
TGTAGTGGGATTGAAATATGAGTTATTGGTAGATATCCACCGTACACTATCCATACTACCCAGTA
CGCTGCGAAATGTAGTCTATCGTAGGGACGCGCCCTGTTTGTATTAGCTGCTACTTCTTGGTGCG
CTTCGACTTCCACCAGTCAAAGTCGATCAACGCCTGCATGCACCCCCACTCGGTGATTTTGTTTT
GCAACCACACCAAGTTGACGGGCTTGGTCAAGTAGTCGTTGCACCCGGCCATCAACGCGTTCTGC
CGGTCCACCAGCGAGTTCAGCAGCGCCGTGAGCGCAACGATGATCACCGGCGCCCGGAACAAGTT
GAGGTCCAACCGCTCCTCGGGCTTCACCGGCGACTTGTGGCTGTGCCACTCCTGGGCAAACACCC
CGATGCGGTTGATGCGCTCCAACCGCCGGATCTCCTTGGTGGCCT
Found at i:402994 original size:12 final size:12
Alignment explanation
Indices: 402977--403029 Score: 76
Period size: 12 Copynumber: 4.7 Consensus size: 12
402967 GGGACGCGGG
*
402977 GGGCTGGGACGC
1 GGGCTGGGACTC
402989 GGGCTGGGACTC
1 GGGCTGGGACTC
403001 GGGCTGGGACTC
1 GGGCTGGGACTC
403013 GGGCT--G-CTC
1 GGGCTGGGACTC
403022 GGGCTGGG
1 GGGCTGGG
403030 CCAGGTCGGT
Statistics
Matches: 38, Mismatches: 1, Indels: 5
0.86 0.02 0.11
Matches are distributed among these distances:
9 8 0.21
10 1 0.03
11 1 0.03
12 28 0.74
ACGTcount: A:0.06, C:0.25, G:0.55, T:0.15
Consensus pattern (12 bp):
GGGCTGGGACTC
Left flanking sequence: Indices 402477 -- 402976
ATTCTCGTACATTATCTCCAGGATATCAAATAAAAAAACGTATAAACAGAAATTTAGTTAACGTT
GGCACCGTAGGAACCTTGAACGTTACCGGCAGGCAGGTAGGAGCAGCCAACCCACTGGCCGTTGC
AGGCGCTGGCACATCCGACACCGGTGGAACCCTTCCAGATAACCTGAGAGTGGTGGTTAAAGCTG
CCATCCAAGCTCTCGGAACACCAGGCGTCAACAACTTCCTTGGGGCCACCGTAGCCCCACGCGAG
GTTCTCACCGTACTTGCCACCAGAGTGAACCAAGTTGGGAGAGCAAACACGGTTACCGTAGTCGG
CAATGTACTTGGCAGCAGCAGCATCCCAGGTGAAGGGGGCGGCGCCGTGGCGGGCTCTGTAACTG
TTTTGGGTGTCCAAGATCTGCTTTTCCCAGGAGGAGAGGTTGCCGTCATCAGTAGAAGGAGCGGA
AGAGGGGGCGGGGGCAGTGCTGGGCTCGGGAGCCTGGGACGCGGG
Right flanking sequence: Indices 403030 -- 403529
CCAGGTCGGTCTGGATAGGAGCCGCGACCTTGTTGTTGTCAGCAGCGATAGTGGCAATAGCGAGG
GGAATGCCGTTCTTGTCGACACGGTCGCCGTTGGGGTTAACGTAGACGGTCACGGCAGCGTCCTG
AGTCTTCTGTTCGTTACCGTTCTTGTAGACGTACTCGACCAGGGTGACGTAGACCGTAGCGGCTT
GGGCAGCGGTGGCAAGCGCGAGGGCAGCGGCAAAAGTGAATTTCATAATGAGTGACTTGGGGTAA
GGTTCTCCAATTTCGGTGAGGCGGATAACAGGTTTTTTATATCATTGTGCCATCTGCCATGTTTG
GAATTGACCGCACAGGTTTGGGAAAATAATATCTGCACGAATTTGCCCATTACGGGTTATTGACA
AAAGGATGCGGGCGCGACTGAGCCTTCAATCCTGTGAGGCGCCGAAGCGCGTCGGTCGCGACACA
GAATGTAAACCAAGAAATAAAGAACCTAGGCAAGTTAATGCGACT
Found at i:427092 original size:8 final size:8
Alignment explanation
Indices: 427079--427106 Score: 56
Period size: 8 Copynumber: 3.5 Consensus size: 8
427069 CACGGAACGT
427079 CAACACCG
1 CAACACCG
427087 CAACACCG
1 CAACACCG
427095 CAACACCG
1 CAACACCG
427103 CAAC
1 CAAC
427107 CACCACGGAG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.39, C:0.50, G:0.11, T:0.00
Consensus pattern (8 bp):
CAACACCG
Left flanking sequence: Indices 426579 -- 427078
GGAGCCGCACCTTGACGGTGTCGAACGGCTGGCCCACCAACACCTGGGCGATGCCACCGACGGTG
CCACCGAGCAAGTCCTTGACCACTTGCATGTTGTCCTGCGTGTACGGAGGCTCCTCCAATTCCAC
TGTCATGATTACTGTCGCTTGGAGATGGCTCTTTACTTCCGAGATCCCGCCTATATAAATTTTCG
CCGCGCCTGCGTGCATACAGATGTAGAGCTTAATTCTGACTCTGAAAAGTGGGGACACACCCGGG
ATTTTCCAGGAGAGGCGGCATTGCGCGGAGACGGTTGCGACGGTCGCGGAGCGCGGTGGGGCCAC
GCTCGCCAAAACCCACGCCACCGGCCACAAACACCGGTGGGGGCACTGTAGACTCTCGTCATCAC
CACCGCCCCTCGCCAGCCCGCCCTCGCGTGCCCATCGTGCATATTTTAGATCCGGGTTTAGGCGA
GCCGTAGCAGGCAGACAACTGCAAGCGATGGCGGTCACGGAACGT
Right flanking sequence: Indices 427107 -- 427606
CACCACGGAGCGTGCGCTTATGTATTCGTAAGAACTGAAATGCTAGATTAATGAGACTGGTCCGC
CGCCTGCTGGGCCTGGGCCTGGGCCTGCTGGGCCATGATCAACCCGTCAAACGGGTTCTGGCCGT
TCTTGGCGTAGTACTGGCCCAGGTGGTGCGGTGCCAGGTTCACCGCGAGCCCCGGCGAGAGCATG
GGCGACTCGAGGTTGGGCTTGATCGCCAGCGCCGACGCCCCCAACGTAGCCACCAACGGGGTGCG
CGGCGCCGCCGAGAAGATGGTGGACACCGACGGGATCAGCTGGAGCGGCGGGTGGGTGGTTTCGA
TCCCCTTGTACGACGACACCTCCAAGAGAATGGTGACGTCCTTGGTGGTCTTGGTCAAGTTGGAC
ATCAGCGACCGCACCTCGTTGAGGATGGGCAAGTCTTGCATGATCCCCTTGACATGCATAAACGT
TTGCACAATCAGCTTGAGGAACAAGTTGGTGTCGTCCCAGAACGC
Found at i:468841 original size:21 final size:21
Alignment explanation
Indices: 468817--468956 Score: 185
Period size: 21 Copynumber: 6.7 Consensus size: 21
468807 AGAACAATGG
468817 GTGAAGAACTAGAGTACTAGA
1 GTGAAGAACTAGAGTACTAGA
*
468838 GTGAAGAACAAGAGTACTAGA
1 GTGAAGAACTAGAGTACTAGA
*
468859 GGGTAA-AACTAGAGTACTAGA
1 GTG-AAGAACTAGAGTACTAGA
* *
468880 GTGAAGAACCAGAGTACTAGG
1 GTGAAGAACTAGAGTACTAGA
* * *
468901 GTGAAGAACCAGAATACTAGG
1 GTGAAGAACTAGAGTACTAGA
468922 GTGAAGAACTAGAGTACTAGA
1 GTGAAGAACTAGAGTACTAGA
*
468943 GT-AGGAACTAGAGT
1 GTGAAGAACTAGAGT
468957 CATAGACTAG
Statistics
Matches: 106, Mismatches: 11, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
20 13 0.12
21 91 0.86
22 2 0.02
ACGTcount: A:0.42, C:0.11, G:0.30, T:0.17
Consensus pattern (21 bp):
GTGAAGAACTAGAGTACTAGA
Left flanking sequence: Indices 468317 -- 468816
CGACGGCACGGTGGTGCCGCTGAACGCCGCCGCCATCGGCGAGGTGCCCCACCAGGAGATCTTCC
AGGTGGTGCGGACAATGGACCCTGCGGACATGAAGCAGTTCATGTACCACGTCCACAAGCACGAG
CGCGACGGGTGGAAGGTGGTGGGGCTGCGCCGGCTCGACAACCACTCGCAGGTGTTGATCTTGGC
CCGGGACCCCACCGGGGCCCGCAAGCCGCGCGGGTGGGCCAACGGGATCAAGAACGCCTTTGCCG
TGGCTGGGGCCGGTTTCTTGGCCATGGTGGGGTTGAACTTTGCGTTGAAGGAGGAGCACGCAGCG
GTGCCGCCTCCTGTGGTTGCTCCGGTGCAGGAGGTGGCTCCCCAGCACGCTGTGCCTGTCGAGCA
GCCTGCTGAGCCGCAGCCGCTTTCGTTGGTGTCGCGTCTCTTGTGGGACCACCCGACGAAGTAGG
ACAGGAGGTACATTGATTAGAAAGCATAAATAAAGAGAACAATGG
Right flanking sequence: Indices 468957 -- 469456
CATAGACTAGAGTACTAGACTAGAGTACCAGAGTCAGGTAGAACTAGAGTGTAGAACCAGTGTAG
AACGAGTGTAGAACTGAATGCATTATGGAGTGTAGAGCTGGACGATGTTTATGGGGTTAAGAGCA
CTTAATATATTCAGTACACCATTACTTCGCCAGATTCTTCAATTCGAGTGGATGTTTACTGCTTC
TAGTCTACTTCTTTTAGTCTATCTTCTTCTATTCTACATCTTCCTCTATATCCCCGTGTCGTTAT
CAATCGCGTCTACGCGCATCGAAAGTTTCGCAGCCATCACACCATGCTTCCGATCAAGTCGACGC
TATCGCGGGTCGGGCGCACGGCACGACACATAGAGCTGCTACAGAAGAACGCGGCGCCGCCTCCA
CAGCCCCGTGCCGCGACTCCGCTCCCACCGAAGCCGCCTGTGCCCAAGGCCGAGCTCAAAAAGTG
GCGGCGCCATCTAGACCACTACCAGACCAAGGTGTACCGCGACTT
Found at i:468967 original size:13 final size:13
Alignment explanation
Indices: 468949--468984 Score: 56
Period size: 13 Copynumber: 2.8 Consensus size: 13
468939 TAGAGTAGGA
468949 ACTAGAGT-CATAG
1 ACTAGAGTAC-TAG
468962 ACTAGAGTACTAG
1 ACTAGAGTACTAG
468975 ACTAGAGTAC
1 ACTAGAGTAC
468985 CAGAGTCAGG
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
13 21 0.95
14 1 0.05
ACGTcount: A:0.39, C:0.17, G:0.22, T:0.22
Consensus pattern (13 bp):
ACTAGAGTACTAG
Left flanking sequence: Indices 468449 -- 468948
CGACGGGTGGAAGGTGGTGGGGCTGCGCCGGCTCGACAACCACTCGCAGGTGTTGATCTTGGCCC
GGGACCCCACCGGGGCCCGCAAGCCGCGCGGGTGGGCCAACGGGATCAAGAACGCCTTTGCCGTG
GCTGGGGCCGGTTTCTTGGCCATGGTGGGGTTGAACTTTGCGTTGAAGGAGGAGCACGCAGCGGT
GCCGCCTCCTGTGGTTGCTCCGGTGCAGGAGGTGGCTCCCCAGCACGCTGTGCCTGTCGAGCAGC
CTGCTGAGCCGCAGCCGCTTTCGTTGGTGTCGCGTCTCTTGTGGGACCACCCGACGAAGTAGGAC
AGGAGGTACATTGATTAGAAAGCATAAATAAAGAGAACAATGGGTGAAGAACTAGAGTACTAGAG
TGAAGAACAAGAGTACTAGAGGGTAAAACTAGAGTACTAGAGTGAAGAACCAGAGTACTAGGGTG
AAGAACCAGAATACTAGGGTGAAGAACTAGAGTACTAGAGTAGGA
Right flanking sequence: Indices 468985 -- 469484
CAGAGTCAGGTAGAACTAGAGTGTAGAACCAGTGTAGAACGAGTGTAGAACTGAATGCATTATGG
AGTGTAGAGCTGGACGATGTTTATGGGGTTAAGAGCACTTAATATATTCAGTACACCATTACTTC
GCCAGATTCTTCAATTCGAGTGGATGTTTACTGCTTCTAGTCTACTTCTTTTAGTCTATCTTCTT
CTATTCTACATCTTCCTCTATATCCCCGTGTCGTTATCAATCGCGTCTACGCGCATCGAAAGTTT
CGCAGCCATCACACCATGCTTCCGATCAAGTCGACGCTATCGCGGGTCGGGCGCACGGCACGACA
CATAGAGCTGCTACAGAAGAACGCGGCGCCGCCTCCACAGCCCCGTGCCGCGACTCCGCTCCCAC
CGAAGCCGCCTGTGCCCAAGGCCGAGCTCAAAAAGTGGCGGCGCCATCTAGACCACTACCAGACC
AAGGTGTACCGCGACTTCTTGACCCCGCTCGGAATGGACAACCTC
Found at i:469012 original size:13 final size:11
Alignment explanation
Indices: 469003--469035 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
468993 GGTAGAACTA
469003 GAGTGTAGAAC
1 GAGTGTAGAAC
*
469014 CAGTGTAGAAC
1 GAGTGTAGAAC
469025 GAGTGTAGAAC
1 GAGTGTAGAAC
469036 TGAATGCATT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.36, C:0.12, G:0.33, T:0.18
Consensus pattern (11 bp):
GAGTGTAGAAC
Left flanking sequence: Indices 468503 -- 469002
GATCTTGGCCCGGGACCCCACCGGGGCCCGCAAGCCGCGCGGGTGGGCCAACGGGATCAAGAACG
CCTTTGCCGTGGCTGGGGCCGGTTTCTTGGCCATGGTGGGGTTGAACTTTGCGTTGAAGGAGGAG
CACGCAGCGGTGCCGCCTCCTGTGGTTGCTCCGGTGCAGGAGGTGGCTCCCCAGCACGCTGTGCC
TGTCGAGCAGCCTGCTGAGCCGCAGCCGCTTTCGTTGGTGTCGCGTCTCTTGTGGGACCACCCGA
CGAAGTAGGACAGGAGGTACATTGATTAGAAAGCATAAATAAAGAGAACAATGGGTGAAGAACTA
GAGTACTAGAGTGAAGAACAAGAGTACTAGAGGGTAAAACTAGAGTACTAGAGTGAAGAACCAGA
GTACTAGGGTGAAGAACCAGAATACTAGGGTGAAGAACTAGAGTACTAGAGTAGGAACTAGAGTC
ATAGACTAGAGTACTAGACTAGAGTACCAGAGTCAGGTAGAACTA
Right flanking sequence: Indices 469036 -- 469535
TGAATGCATTATGGAGTGTAGAGCTGGACGATGTTTATGGGGTTAAGAGCACTTAATATATTCAG
TACACCATTACTTCGCCAGATTCTTCAATTCGAGTGGATGTTTACTGCTTCTAGTCTACTTCTTT
TAGTCTATCTTCTTCTATTCTACATCTTCCTCTATATCCCCGTGTCGTTATCAATCGCGTCTACG
CGCATCGAAAGTTTCGCAGCCATCACACCATGCTTCCGATCAAGTCGACGCTATCGCGGGTCGGG
CGCACGGCACGACACATAGAGCTGCTACAGAAGAACGCGGCGCCGCCTCCACAGCCCCGTGCCGC
GACTCCGCTCCCACCGAAGCCGCCTGTGCCCAAGGCCGAGCTCAAAAAGTGGCGGCGCCATCTAG
ACCACTACCAGACCAAGGTGTACCGCGACTTCTTGACCCCGCTCGGAATGGACAACCTCAAGGTG
TTCAACGACCCCGAGCCGTTCGACGCGGTGTCTGCGCACGCCAAG
Found at i:469169 original size:14 final size:14
Alignment explanation
Indices: 469143--469194 Score: 59
Period size: 14 Copynumber: 3.6 Consensus size: 14
469133 AGTGGATGTT
*
469143 TACTGCTTCTAGTC
1 TACTTCTTCTAGTC
*
469157 TACTTCTTTTAGTC
1 TACTTCTTCTAGTC
*
469171 TATCTTCTTCTATTC
1 TA-CTTCTTCTAGTC
*
469186 TACATCTTC
1 TACTTCTTC
469195 CTCTATATCC
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
14 20 0.62
15 12 0.38
ACGTcount: A:0.15, C:0.27, G:0.06, T:0.52
Consensus pattern (14 bp):
TACTTCTTCTAGTC
Left flanking sequence: Indices 468643 -- 469142
TGCCGCCTCCTGTGGTTGCTCCGGTGCAGGAGGTGGCTCCCCAGCACGCTGTGCCTGTCGAGCAG
CCTGCTGAGCCGCAGCCGCTTTCGTTGGTGTCGCGTCTCTTGTGGGACCACCCGACGAAGTAGGA
CAGGAGGTACATTGATTAGAAAGCATAAATAAAGAGAACAATGGGTGAAGAACTAGAGTACTAGA
GTGAAGAACAAGAGTACTAGAGGGTAAAACTAGAGTACTAGAGTGAAGAACCAGAGTACTAGGGT
GAAGAACCAGAATACTAGGGTGAAGAACTAGAGTACTAGAGTAGGAACTAGAGTCATAGACTAGA
GTACTAGACTAGAGTACCAGAGTCAGGTAGAACTAGAGTGTAGAACCAGTGTAGAACGAGTGTAG
AACTGAATGCATTATGGAGTGTAGAGCTGGACGATGTTTATGGGGTTAAGAGCACTTAATATATT
CAGTACACCATTACTTCGCCAGATTCTTCAATTCGAGTGGATGTT
Right flanking sequence: Indices 469195 -- 469694
CTCTATATCCCCGTGTCGTTATCAATCGCGTCTACGCGCATCGAAAGTTTCGCAGCCATCACACC
ATGCTTCCGATCAAGTCGACGCTATCGCGGGTCGGGCGCACGGCACGACACATAGAGCTGCTACA
GAAGAACGCGGCGCCGCCTCCACAGCCCCGTGCCGCGACTCCGCTCCCACCGAAGCCGCCTGTGC
CCAAGGCCGAGCTCAAAAAGTGGCGGCGCCATCTAGACCACTACCAGACCAAGGTGTACCGCGAC
TTCTTGACCCCGCTCGGAATGGACAACCTCAAGGTGTTCAACGACCCCGAGCCGTTCGACGCGGT
GTCTGCGCACGCCAAGTGGCGGCGGCTGGCGGACCCCTCGCCCAAACAGCAGTTCCACAACTACT
TGGAGGAAAAGACCAAGTTCGAGCAGATGGCGCTGATGCTCATCGACAGCTTCCCCAACGACCTC
AAGAACGTCGACTCGCCCGCACGGTTGGCCCGCACGTTTGGCCAG
Found at i:476013 original size:20 final size:20
Alignment explanation
Indices: 475954--476022 Score: 77
Period size: 20 Copynumber: 3.5 Consensus size: 20
475944 ATGATAAGGT
**
475954 GAGG-TGATGGGGTATGAAA
1 GAGGATGATGGGAAATGAAA
* * *
475973 GAGTATGACGGTGAGATGAAA
1 GAGGATGATGG-GAAATGAAA
475994 GAGGATGATGGGAAATGAAA
1 GAGGATGATGGGAAATGAAA
476014 GAGGATGAT
1 GAGGATGAT
476023 CGTAAAATGA
Statistics
Matches: 41, Mismatches: 7, Indels: 3
0.80 0.14 0.06
Matches are distributed among these distances:
19 3 0.07
20 22 0.54
21 16 0.39
ACGTcount: A:0.38, C:0.01, G:0.42, T:0.19
Consensus pattern (20 bp):
GAGGATGATGGGAAATGAAA
Left flanking sequence: Indices 475454 -- 475953
GTGAGGTAATCAATCATGATGCCAAATTTGACGTATTTGTTGCAGCCAGTGTCGGGGTTCGGGGT
GAGTCCCTGGCGATACATCTCAATCATCGGCGCAAACACGTCCGTCCAGTACTCGGCCTCGAAGT
TGACCCGGTCACAACGCATGTCTAGCTGGGCACACACCTTTTTGACGTCGTTCCAGTCGTCCTCG
GTGCAGCGGGCGGTTTGCGACCAGTTGGCCATATAGATGCCTCGTACGTTGCGGTACCGCTGGCG
ACAGAGCGCTGCGGCGACCGACGAGTCTACCCCCGAGCTCATCGCTACCACCACCTCGTCGTCGG
GACCGGGCTCGCTCTGGGTGTACACGGCCGGGTCCACGGGGTTGGTGAGTGTGAGCGACTTGGCA
AGCTTATCGGCCAAAGAGGAGCCATGTCGCCGTAGATTTAGTGGCACCCCGAGACGTGATCTGAG
CATTCGGTTACTAACGGTTTTTTCGTGCGGCTCAGATGATAAGGT
Right flanking sequence: Indices 476023 -- 476522
CGTAAAATGATCACAACAATACTGTTTCGGAGCGGAGTGTGTGACATGGGTAGATCCAGAAAGTG
GCGTAGCAATCAGCATCAGAGAACAGCTGATTGTTCTTTGACGTACACTTAAGGTCAAGAGCCTT
GAAAGCATGCTAGATCCGCTGGAACTACACTTATCCCGCTGGCCCGCTCACAGTGGCCGTGTTTC
ATCTCTCGCATCGGCCTTCCCCCACACCGGAGGCGATCTCGGAGTTCGGAGTGCACTGAGCGCGA
TCTACACCGAACTGGCCACCACCAACAATAGCGGGGCGTCTAAATACCCCACACAAACCACCAGT
AAGCCACTCTTCTCTCTTCTCACCACCTAAAACCCGTTTTCGCCGTCCTCGTATCCGCCTCCGGC
CCCGTCCGCAGACTCGGGACCCGTGGTGAAACTGACTCCGACCAAAGGTTCTCCCCGCCGTAAAG
CGGCTTCGTCTTTCCCACACCCATCTCCACCCACCTGCTCCCCAA
Found at i:476032 original size:21 final size:20
Alignment explanation
Indices: 475988--476032 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
475978 TGACGGTGAG
*
475988 ATGAAAGAGGATGATGGGAA
1 ATGAAAGAGGATGATGGAAA
*
476008 ATGAAAGAGGATGATCGTAAA
1 ATGAAAGAGGATGAT-GGAAA
476029 ATGA
1 ATGA
476033 TCACAACAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 15 0.68
21 7 0.32
ACGTcount: A:0.47, C:0.02, G:0.33, T:0.18
Consensus pattern (20 bp):
ATGAAAGAGGATGATGGAAA
Left flanking sequence: Indices 475488 -- 475987
ATTTGTTGCAGCCAGTGTCGGGGTTCGGGGTGAGTCCCTGGCGATACATCTCAATCATCGGCGCA
AACACGTCCGTCCAGTACTCGGCCTCGAAGTTGACCCGGTCACAACGCATGTCTAGCTGGGCACA
CACCTTTTTGACGTCGTTCCAGTCGTCCTCGGTGCAGCGGGCGGTTTGCGACCAGTTGGCCATAT
AGATGCCTCGTACGTTGCGGTACCGCTGGCGACAGAGCGCTGCGGCGACCGACGAGTCTACCCCC
GAGCTCATCGCTACCACCACCTCGTCGTCGGGACCGGGCTCGCTCTGGGTGTACACGGCCGGGTC
CACGGGGTTGGTGAGTGTGAGCGACTTGGCAAGCTTATCGGCCAAAGAGGAGCCATGTCGCCGTA
GATTTAGTGGCACCCCGAGACGTGATCTGAGCATTCGGTTACTAACGGTTTTTTCGTGCGGCTCA
GATGATAAGGTGAGGTGATGGGGTATGAAAGAGTATGACGGTGAG
Right flanking sequence: Indices 476033 -- 476532
TCACAACAATACTGTTTCGGAGCGGAGTGTGTGACATGGGTAGATCCAGAAAGTGGCGTAGCAAT
CAGCATCAGAGAACAGCTGATTGTTCTTTGACGTACACTTAAGGTCAAGAGCCTTGAAAGCATGC
TAGATCCGCTGGAACTACACTTATCCCGCTGGCCCGCTCACAGTGGCCGTGTTTCATCTCTCGCA
TCGGCCTTCCCCCACACCGGAGGCGATCTCGGAGTTCGGAGTGCACTGAGCGCGATCTACACCGA
ACTGGCCACCACCAACAATAGCGGGGCGTCTAAATACCCCACACAAACCACCAGTAAGCCACTCT
TCTCTCTTCTCACCACCTAAAACCCGTTTTCGCCGTCCTCGTATCCGCCTCCGGCCCCGTCCGCA
GACTCGGGACCCGTGGTGAAACTGACTCCGACCAAAGGTTCTCCCCGCCGTAAAGCGGCTTCGTC
TTTCCCACACCCATCTCCACCCACCTGCTCCCCAAACGACCGCTT
Found at i:487875 original size:18 final size:18
Alignment explanation
Indices: 487852--487893 Score: 66
Period size: 18 Copynumber: 2.3 Consensus size: 18
487842 ACGTGCCTCC
487852 TCGTGGCGGCCGCGGTGG
1 TCGTGGCGGCCGCGGTGG
*
487870 TCGTGGCGGCCGTGGTGG
1 TCGTGGCGGCCGCGGTGG
*
487888 CCGTGG
1 TCGTGG
487894 TGGCTTCAGA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.00, C:0.26, G:0.55, T:0.19
Consensus pattern (18 bp):
TCGTGGCGGCCGCGGTGG
Left flanking sequence: Indices 487352 -- 487851
CGTGCCTCGTCGCACAAGGTGTTTGTGCGCCCCATCGGCTTCAACACCCGCTACGAGGACTTGGA
GGACCACTTTGGCTCCGTTGGCAAGATCGCCAACATCCAGCTCATGCGTGGCTACGGGTTTGTCA
CGTTCGAGACTGCCGACGAGGTGGCCGCTGCGGTGGAGAAGTTGCACGACTCCGAGCTCATGGGC
GAGCGGTTGGTGGTTGAGGCTGCCCAGCCCCCCAAGGAGGACAACCGGGGCAAGTTCCGGGCTAA
GGTGAGCAACATTGCCAGCGGCACCGCGTGGCAGGACTTCAAGGACTTTGTCCGTGACAAGACCG
GGTCCGACCCCTCTTTCGTCAAGGTGTACCGTGACTTTGACTCTGGTGAGCACCTTGGTGCCATC
GAGTTTGCTTCCCAGGACGAGCTTGACCGTGCTCTCCCCATTATTGACGGCAGCGAGTTCAACGG
CACCACCATCACTGCTGTCGTGGACGACTCTCCCTACGTGCCTCC
Right flanking sequence: Indices 487894 -- 488393
TGGCTTCAGAGGCGACCGTCGTGGTGGTTTCCGTGGTGGTCGCGGCGGTGGTGACCGGGGCTTTG
ACAGACGTGGTGGCTTCCGTGGCGGCGACCGTGGTGACCGTGGTGACCGTGGTGACTACCCTCCC
AGAGACCGCTACCGTTCCGGCGACCGTGACGGTGGCGACTACGGGTACGACAATGGCTCGAGAGG
CTACGACCGGGACAGATCGCCTACTAGATATTAAGCGGGCATAACCTATTTGTATGATTACTTGG
AACAAAAAACTACCATTATTGTAAGGGGATTGTGCAACGTGGATGCCCAGTATATAGTGGGGTGC
CAAGGCACCCATCGTAGGCCGTAGCAGTGGCGTGGTGTCACTAGTGGAAACGACCAGTGGTGTGT
CTGAGAGTGGTTACTATTCTCGTGTTTTCTCTATTCACCTCTATTTCTGTCTTATATTGCAGTAG
CCATGAGGCGCGAGGAAATATCCCTGTGTGCATGTCAGTGGTCTC
Found at i:487889 original size:9 final size:9
Alignment explanation
Indices: 487853--487897 Score: 54
Period size: 9 Copynumber: 5.0 Consensus size: 9
487843 CGTGCCTCCT
*
487853 CGTGGCGGC
1 CGTGGTGGC
* *
487862 CGCGGTGGT
1 CGTGGTGGC
*
487871 CGTGGCGGC
1 CGTGGTGGC
487880 CGTGGTGGC
1 CGTGGTGGC
487889 CGTGGTGGC
1 CGTGGTGGC
487898 TTCAGAGGCG
Statistics
Matches: 29, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
9 29 1.00
ACGTcount: A:0.00, C:0.27, G:0.56, T:0.18
Consensus pattern (9 bp):
CGTGGTGGC
Left flanking sequence: Indices 487353 -- 487852
GTGCCTCGTCGCACAAGGTGTTTGTGCGCCCCATCGGCTTCAACACCCGCTACGAGGACTTGGAG
GACCACTTTGGCTCCGTTGGCAAGATCGCCAACATCCAGCTCATGCGTGGCTACGGGTTTGTCAC
GTTCGAGACTGCCGACGAGGTGGCCGCTGCGGTGGAGAAGTTGCACGACTCCGAGCTCATGGGCG
AGCGGTTGGTGGTTGAGGCTGCCCAGCCCCCCAAGGAGGACAACCGGGGCAAGTTCCGGGCTAAG
GTGAGCAACATTGCCAGCGGCACCGCGTGGCAGGACTTCAAGGACTTTGTCCGTGACAAGACCGG
GTCCGACCCCTCTTTCGTCAAGGTGTACCGTGACTTTGACTCTGGTGAGCACCTTGGTGCCATCG
AGTTTGCTTCCCAGGACGAGCTTGACCGTGCTCTCCCCATTATTGACGGCAGCGAGTTCAACGGC
ACCACCATCACTGCTGTCGTGGACGACTCTCCCTACGTGCCTCCT
Right flanking sequence: Indices 487898 -- 488397
TTCAGAGGCGACCGTCGTGGTGGTTTCCGTGGTGGTCGCGGCGGTGGTGACCGGGGCTTTGACAG
ACGTGGTGGCTTCCGTGGCGGCGACCGTGGTGACCGTGGTGACCGTGGTGACTACCCTCCCAGAG
ACCGCTACCGTTCCGGCGACCGTGACGGTGGCGACTACGGGTACGACAATGGCTCGAGAGGCTAC
GACCGGGACAGATCGCCTACTAGATATTAAGCGGGCATAACCTATTTGTATGATTACTTGGAACA
AAAAACTACCATTATTGTAAGGGGATTGTGCAACGTGGATGCCCAGTATATAGTGGGGTGCCAAG
GCACCCATCGTAGGCCGTAGCAGTGGCGTGGTGTCACTAGTGGAAACGACCAGTGGTGTGTCTGA
GAGTGGTTACTATTCTCGTGTTTTCTCTATTCACCTCTATTTCTGTCTTATATTGCAGTAGCCAT
GAGGCGCGAGGAAATATCCCTGTGTGCATGTCAGTGGTCTCGTAC
Found at i:487997 original size:9 final size:9
Alignment explanation
Indices: 487985--488014 Score: 60
Period size: 9 Copynumber: 3.3 Consensus size: 9
487975 CCGTGGCGGC
487985 GACCGTGGT
1 GACCGTGGT
487994 GACCGTGGT
1 GACCGTGGT
488003 GACCGTGGT
1 GACCGTGGT
488012 GAC
1 GAC
488015 TACCCTCCCA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.13, C:0.23, G:0.43, T:0.20
Consensus pattern (9 bp):
GACCGTGGT
Left flanking sequence: Indices 487485 -- 487984
TCGAGACTGCCGACGAGGTGGCCGCTGCGGTGGAGAAGTTGCACGACTCCGAGCTCATGGGCGAG
CGGTTGGTGGTTGAGGCTGCCCAGCCCCCCAAGGAGGACAACCGGGGCAAGTTCCGGGCTAAGGT
GAGCAACATTGCCAGCGGCACCGCGTGGCAGGACTTCAAGGACTTTGTCCGTGACAAGACCGGGT
CCGACCCCTCTTTCGTCAAGGTGTACCGTGACTTTGACTCTGGTGAGCACCTTGGTGCCATCGAG
TTTGCTTCCCAGGACGAGCTTGACCGTGCTCTCCCCATTATTGACGGCAGCGAGTTCAACGGCAC
CACCATCACTGCTGTCGTGGACGACTCTCCCTACGTGCCTCCTCGTGGCGGCCGCGGTGGTCGTG
GCGGCCGTGGTGGCCGTGGTGGCTTCAGAGGCGACCGTCGTGGTGGTTTCCGTGGTGGTCGCGGC
GGTGGTGACCGGGGCTTTGACAGACGTGGTGGCTTCCGTGGCGGC
Right flanking sequence: Indices 488015 -- 488514
TACCCTCCCAGAGACCGCTACCGTTCCGGCGACCGTGACGGTGGCGACTACGGGTACGACAATGG
CTCGAGAGGCTACGACCGGGACAGATCGCCTACTAGATATTAAGCGGGCATAACCTATTTGTATG
ATTACTTGGAACAAAAAACTACCATTATTGTAAGGGGATTGTGCAACGTGGATGCCCAGTATATA
GTGGGGTGCCAAGGCACCCATCGTAGGCCGTAGCAGTGGCGTGGTGTCACTAGTGGAAACGACCA
GTGGTGTGTCTGAGAGTGGTTACTATTCTCGTGTTTTCTCTATTCACCTCTATTTCTGTCTTATA
TTGCAGTAGCCATGAGGCGCGAGGAAATATCCCTGTGTGCATGTCAGTGGTCTCGTACGGGCTGC
ACCCGCTTCAGCAGATCAAGGTGTTTGCGTACGATCCGGCGGTGACCAAGCTGGTGATTTTTATT
CACGGCGGGGCCTGGCGCGACCCAAACAACACCTACGACGACTTT
Found at i:503295 original size:12 final size:12
Alignment explanation
Indices: 503278--503302 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
503268 TTCTTGAAAC
503278 ACATCAATAAAT
1 ACATCAATAAAT
503290 ACATCAATAAAT
1 ACATCAATAAAT
503302 A
1 A
503303 GAGTTGGAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.60, C:0.16, G:0.00, T:0.24
Consensus pattern (12 bp):
ACATCAATAAAT
Left flanking sequence: Indices 502778 -- 503277
GTCACTTGCCCTTCTGCAAGAGTATGACTTTGGCTCAGTTGAACCCCATGTACCACATCAAGGGC
AAGAAGAAGTTTGAGTTGAGCGAGAAGGAAAGGGAAGAGTTGTTCGCCCGGGTTAAGGAGCAGGA
TCTCGCAGCTGGACAGGATGACTCGACCCCCACTACCGAAACGGCCGCCCCTGAGGAGAAAGTGC
AAGATCTTCAAGAAGTTAAAGAGGTCTCGACCACATCGCTTTCTTCAGTCCTGGCTGCCCACGTG
CAAAGCAAGTAGTTGCTTCTACCTCCGTTACCACATTTTATTGTTTGTTTGATTTTTCATTTCGT
TTACTTGTCACAGAGGGGGCCGGGTTGTCAGGGTTTGTATCGACACACACACACACACATTTTTG
ATATATTCAAACCCCGGTGGCTCGGCTTTCTTTGTGACTTAGGATATAGGGATATTAATAAACGG
GATTCTCATTACTACAGTTGATTTGAATAGATAACTTCTTGAAAC
Right flanking sequence: Indices 503303 -- 503802
GAGTTGGAAATAAATCACTTCTTCACGTTACCAACGATCTCGATGATCTGCTGCACAACCTGGGG
GTTGGACAAGGTCGAGATGTCACCCAACTGGTCGGACTCGCCGGCCAAAACCTTTCTCAAGATTC
TTCTCATGATCTTACCGGATCTGGTCTTGGGAAGGTCGTCAACCAACAAGATCATCTTGGGGGCG
GCGAAAGGACCAATCTCCTTTCTGACGGTCAACACCAACTCCTTCTTGATGGCGTCAAGGTCCTC
CTCGGGGATGTCCTTGTTCTTGAGCGACACGTAAGCAGCGACGGCCTGACCGGTCAAGTCGTCAG
CGTAACCAACAACAGCGGACTCACCAACCAACTCGTGCTCGATGAGGGCAGCCTCAATCTCAGCA
GTGGACAAACGGTGACCAGAGACGTTGACGACATCGTCGACACGGCCGAGAATCCAGAAGAAACC
GTCCTTGTCACGGGCAGCACCGTCACCCGAGAAGTAGTAGCCGGG
Found at i:514829 original size:13 final size:15
Alignment explanation
Indices: 514796--514860 Score: 82
Period size: 15 Copynumber: 4.4 Consensus size: 15
514786 CAACGATCCT
514796 AGACAAAGGTCTAAGG
1 AGAC-AAGGTCTAAGG
514812 AGACAAGGTCT-A-G
1 AGACAAGGTCTAAGG
514825 AGACAAGGTCTAAGG
1 AGACAAGGTCTAAGG
*
514840 AGACAAGG-CTTAGGG
1 AGACAAGGTC-TAAGG
514855 AGACAA
1 AGACAA
514861 AGGTGCGCAA
Statistics
Matches: 45, Mismatches: 1, Indels: 7
0.85 0.02 0.13
Matches are distributed among these distances:
13 12 0.27
14 3 0.07
15 26 0.58
16 4 0.09
ACGTcount: A:0.42, C:0.14, G:0.32, T:0.12
Consensus pattern (15 bp):
AGACAAGGTCTAAGG
Left flanking sequence: Indices 514296 -- 514795
AACTGGTTGTGGCACAACGTCACCACCTACGAGCCGTACCTGGTGGAGTTGCTGTTCCGCGACGT
GGTCACGTTGGGCCACTCAAAGACGTTTGGCGGCGGGCTGGGTGCCAAGTACGTGCTCAAGTCGC
TTTCGCCGCTGGCCCGCGGTGTCTACAAAATTGCCGTGGAGCGCCAGTTGGCGATCATGGCGGAC
AAGGGGGCCAAGACCGGGGCGCTCAAGTGCTCGATGGCGTTTTCCGACCTCTTTGCTGAGTGTCT
GGCCCAGATGGTGGTTTCGTCGCAGCTCCAGTTCCGCACGTTGCTCAAGGAGTTCCTTGACCACA
AGATGCTCAAGTTGGTCACCGACAAGCTGGGTGACGAGCGCATCTACATTCCCTACACCATAGGC
GAGATCCAGAAGCTCCAGCTGGAGACCGCGTAGTATTAGCATTGCCGCCAAGTCGGCTGCCCTGT
GGGCGTACATAATAATAGAACAATAAGATTAACGTCAACGATCCT
Right flanking sequence: Indices 514861 -- 515360
AGGTGCGCAAAAGTTCGCACAAGTGTTCTGGTGGCACTAACTATACACTAGTAGTCGTGCGATCT
GCGCGTAGGTTGCGATCGGTCGTTTGGCCAACCGACCTTCGCTCGAGTACACCTGCCTGAAACAC
GGGACGGTATCGAGTTGCTCCAGATTAGGCGGCCGTCCCGAACCACCAAACAAGCACCCCCACAC
GCCGTCAACGCGGTCTACAAAGCCCCAGCACGCTCCCTATCCCCCATCCAAAGAGGCGCAGGCTC
CCCCTTGGGCAGGGTCTGCGTGCGCATGCATTGGACGCGGGGCACTGGTTGGTTGCCACATGCGG
CCGCCGATCAACGCCAATTGGCGCGGTCACCCGGTAGCAAGCGTTTGGCGGTGCCGCCGCCACCC
ATCGTAGCCACCCCCGCCGTCTCGTGGCACCCGTATCCGGTGCCTGCTCGTTTCTCGCCTATATG
CAACATTACCAAACCCGAGATTGACAGCGCGGCCCACCGCCAGCG
Found at i:517523 original size:12 final size:12
Alignment explanation
Indices: 517508--517569 Score: 51
Period size: 12 Copynumber: 5.4 Consensus size: 12
517498 GCCGCAGACG
517508 CAGCCGGTGGCC
1 CAGCCGGTGGCC
*
517520 CAGCC-GTTGCC
1 CAGCCGGTGGCC
517531 GCAGCCGGTGG--
1 -CAGCCGGTGGCC
*
517542 C-TCCGGTGGCC
1 CAGCCGGTGGCC
* *
517553 CAGCCCGTAGCC
1 CAGCCGGTGGCC
517565 CAGCC
1 CAGCC
517570 ACAGCCGCCC
Statistics
Matches: 39, Mismatches: 6, Indels: 10
0.71 0.11 0.18
Matches are distributed among these distances:
9 7 0.18
10 1 0.03
11 6 0.15
12 22 0.56
13 3 0.08
ACGTcount: A:0.10, C:0.44, G:0.35, T:0.11
Consensus pattern (12 bp):
CAGCCGGTGGCC
Left flanking sequence: Indices 517008 -- 517507
ACTTTGTCGACCCGGCAGCCCTGGCGCGCCAGCACTCGCACCCGAGCTCGGAAGGGTCTCGAACG
CCGCCCGACGGGCCCAGCCGCAAGTCGCTGGCGCTGGACAAACGCGGCGGCGAGTACAGCAACAA
GGAGGCGTGGGAGCTGCGCACGCACCTGGCCAACCTCACCGACGAGGCCGGCAAGCTCGCGGACG
ACATCTTTGCCGGACCGCTGCTGAGCCACCACCTGATGAAGTCGGTGGGGTCGCAGTACGACGCG
GTGGAGGAGCTGGACGAGTTTGAGTTCGAGTCGGCGGTGGTGCTGCGGTACCCGGACGTGCCCGA
CCTCAAGGACCTGCCGGCGGCCCCGGCGCTGACGTCGCCGCCCAGGCTGCCCGAGCCCGCGTTGC
CCATCCATTCGCATGTCCCGCCGCAACTGGCGCTTCCCCCGTTGCCCAACGTGCAACAGCCCGTC
CCCCAGCATCCCAAGAACAAGCCGCCGCCGCCGGTGCCGCAGACG
Right flanking sequence: Indices 517570 -- 518069
ACAGCCGCCCCAGCCGCCGCTGCAGCCGTTGACAGTGCCGCAGCCGGTGGCCATCCCGCAAATGG
CGCCGCCGCAAGTGTCGGCCGCCACCCAGGTGTCGCCGCGGTCGAACAACCCGTTCCCGTTCACC
CCGTCGTCGCAGCCGTCGCAGCCGCCGGCGGTGGTCCCGTACGACGTGGCGTCCGCGTCGCCGGC
GGTGCCCACGGAGCGCCCGCAGCGGAGCTCGCTGGCCAAGAAAAGCGCCAACCCGTGGGGCGAGT
ACCAGCGGCCCAACCTGGTGCTGAGGATGAAGCTGAGCCTGCTGGCGCAGGAGCTGCTGCCGATG
TTTGCCGGGATGGCGCAGGTGGACGAGCAGAACCTCATCGACTTGGACTTGGGCGACGCGGTGCC
GCTGAGCCAGCGTGCCAAGCGGTCCAGCGACGAGGGGTCCGATCTCGAGACCACCAAGAGCCGCG
AGAACCACACCAAGCTCAAGCCGAAGCGGTTGCTGTCGATCCCCG
Found at i:524912 original size:15 final size:13
Alignment explanation
Indices: 524883--524907 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
524873 TGTGGCCTAT
524883 GTGTGCTGGTGAG
1 GTGTGCTGGTGAG
524896 GTGTGCTGGTGA
1 GTGTGCTGGTGA
524908 TAGGTTGCGA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.08, C:0.08, G:0.52, T:0.32
Consensus pattern (13 bp):
GTGTGCTGGTGAG
Left flanking sequence: Indices 524383 -- 524882
GATATACTGGAGGTCGAGCCAGGTGCGGTCCAAAAGGTTTTGCTCGCCTTTTCTCCACGGGGGCG
GGATGGCCGCTAACTGGTTCTCCACCAGCGACAACACCACCGTGGCCACGAGGGCCACCGCAACA
AATAGCGTAAGCAGAGTTTTGCGGTAGCCAAACACCGAGCGGAAAAACTGCACAAACACGTTGGG
TTTGCGGTCAATGGACTCCCGCAGCCGGTGGGAGTGTCCACCAGGGGAAGGGATGTCGTCACCCA
TAGCGTAGTGCCTTGTTTGCAGAGGGTGTAAGGGATGTGGGATGTTATTGTGCGATAATGTCGCT
GTGCATAAAAGCCGCAGGGGCGATAGTCGAGCGGTGGAGGACTACGCAAGAACGGGGGGACGGGT
GGCGACCAGATCGTTTTGAGATGGTGGGGGCGCGAGGGTGTTTACGGCGGGGTGGGTGTGTAGGT
TTAATTGTGAGTTTGGGGTTAGCAATCGTGGTTCGTGTGGCCTAT
Right flanking sequence: Indices 524908 -- 525407
TAGGTTGCGAAGGTGACTGTGCATGGTTCCCAGGGTCCCACGAGGGTTCAATTGGTTGCGAAATG
CTCAGAGAAGGTCTTCGGTGGGTTGAGAGAAGAGCACTTGGTGTGGAGTGCTTCGTCAGACGTCC
CTTACCATTCTTCTACCTGGCTTAGGAATTTACGAGTGGAACAACCTGTGGCTGTAGAATTGACC
CAAACATCAGATTGAAACGTTGATGGAGATTGAATCCAGAAATCCCTCTCCTTCCTACAGCCTTC
AACGCCCCAATCCCTCCGTCATTCCTATCCACTGCTTCAGCTGACCCTGTGAGGCGGGTGACCTT
CGGCAGAAGCAATCTAAGCTGTGATATTTTTAACCTCCGGAAAAATAAGGCGGGCTCGCTGAGAA
GGCCAGCCTCACAGTCCGAGCCCCAAAGACACTTTTAAAGGTCGACTACAGTACGGGTATTCTGC
CTGTGCACGCCCGGTCTGCACTTGTGCCTTTTCCATGGGGCTGTT
Found at i:530777 original size:36 final size:36
Alignment explanation
Indices: 530735--530807 Score: 128
Period size: 36 Copynumber: 2.0 Consensus size: 36
530725 GGGGTCTATA
*
530735 GCGATTGATTTGTTCTGGTCCGGCAAAGACGGCATG
1 GCGATTGATGTGTTCTGGTCCGGCAAAGACGGCATG
*
530771 GCGATTGGTGTGTTCTGGTCCGGCAAAGACGGCATG
1 GCGATTGATGTGTTCTGGTCCGGCAAAGACGGCATG
530807 G
1 G
530808 TGACGGGTTC
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
36 35 1.00
ACGTcount: A:0.18, C:0.19, G:0.37, T:0.26
Consensus pattern (36 bp):
GCGATTGATGTGTTCTGGTCCGGCAAAGACGGCATG
Left flanking sequence: Indices 530235 -- 530734
ACATGATCCGTCGCGGGCATGGTAGCTTGGCCAAGTGCTGTAACACCTTATTCGTCGGCAGTTTG
AGCCGGTGGCCCTCGTCGCAGACCACCATGTCGATGGGACAGCCCTGGAGCTGCTCGAAATAGCC
AGGGATCTTCTCGTAGTTGACCACAAGCACCTGGTACACGTTGAGGCGGCCAAAGCTGACGATTT
GCAGGTGCTGGCTGCCGTCGGTGACTGCGAGCACCAGGACCCGGGGTCCAAGCCACTTCTTAAAC
TCGGCCACCCAGTTGGACACAAGCGTCACCGGACAAACTACCACGATCTTGGAAATCTCCCGGGT
TTGTTTGAGGAGGGTCCACACAAGGGTGATAACCTGGAGGGTCTTGCCGAGTCCCATCTCGTCTG
CGAGCAAACAGCCCCGTCCCGCGTCACGGAACCCCATCACTGCCTCGTACATGAACCGGACGCCC
TCCACCTGGTGTGGGCGCAATTTGTTGGCCAAAATGGGGTCTATA
Right flanking sequence: Indices 530808 -- 531307
TGACGGGTTCAGCGGGTGCTGGCAGGGGTTCCAGCACCGTCTCTGGTTGCGAGGGGACAAAAAGC
TCTGGCTCTGGTTCCACGACCTCAGGAGCCTTTGGAGCCACAGCGGGCGCGGTGTCAACCAAAAC
TACATCATCGTCGTCTATCTCAAACTCGTAGCCCCCTACAGCCACCACCCCCCGGAGGAGGTCGT
CCTTGGCCTGCTGGAACTGCTTGCGAGACATCACGTGGCCGTCGCTGCCTTTGAGCACCACCACC
ACCAGCTCGCCCAGCTTCGTTGCAATGACGGACCCGTCTCCCTCCCACGTCTTGTTCTTCTTGTT
GCTCTTTTTGCGCCACTGGACCGCAAACCGCTGGCCCTCCTCAGACGATGGTGGGGTGGGTGCGG
TTACCGGGGCTGGAGCGGGTACCACCACTGGCAGCGGACGAGGAGCGGTTCTCACCAACCCCACA
CGGCGTCTGACGGGCCCAGGAGCCCGTTTAGCGACCTTGGCAACT
Found at i:546572 original size:18 final size:18
Alignment explanation
Indices: 546549--546585 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
546539 TGAGGACTTG
546549 GAGGGCGAAGAAGGCGAA
1 GAGGGCGAAGAAGGCGAA
* *
546567 GAGGGCGAGGATGGCGAA
1 GAGGGCGAAGAAGGCGAA
546585 G
1 G
546586 GATCCGACGA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.32, C:0.11, G:0.54, T:0.03
Consensus pattern (18 bp):
GAGGGCGAAGAAGGCGAA
Left flanking sequence: Indices 546049 -- 546548
CCGGCGACGACAACGACGACGCCGAGCCCCAGATGGAGGAGTTTGAGTTTGACCACGACCGGTAC
CGCGAGGACGAGGTCGAGTTTGCCGAGGACTCCGACCTCGAGGACTTTGTGCTGGTGGCCCAGCG
GCTCCAGGGCACCGGCAAGCGGCGCTACGACTTGAACAAGCTCATCTACGAGCCCACGGTGTCTC
CCGCGGACGTCATCAGCCGGTGGCGGGGCGACGAGGTCGAGGGCGAGGAAGAGGACATCGAGGAG
GACGACGACACCTTTTTCAAGCAGAAGCAGCAGGCGGATGCCGCCAAGTTGGCGGCCAACACCGA
GTTCCCCAGCGTGGACACGTTGCGCGAGATGTTTGACGCCACCAACGACGACGCCGAGTACGAGC
TGGGGTACCAGTTCTTGAAGCTGCGGTTCCTCGTGGCCCCGAAGATGACCGACGAGGAGGCCAAG
GCCAAGGGCGACGACGAGGAGGTGTACGGCGACTTTGAGGACTTG
Right flanking sequence: Indices 546586 -- 547085
GATCCGACGATGGCGAGGACGAGGCCATGGACTCTGCTGACAAAAAGGACGACTTTGTCGACTTT
GAGCAGGAGGAGATCAAGGACGAGTTGGCCGAGCCCGTGCTGACCGAGGAGGCCCGCAAGCTCAA
CGCCGAGAAGAAGGCCAAGCTCAAGCTCCAGTTCGAGGACGAGGAGGACCGCGAGTTTGGCGCCG
AGGACTTTGAGAACGACACCGAGACGTGGTACGAGATGCAGAAGAACAAGATGGCCAAGCAGTTG
GACATCAACAAGGCGGAGTACGAGTCGATGGACCCCGCGGCCCGGCTCAAGATCGAAGGCTACCG
CGCTGGCTCCTACGTCAAGCTCGTGTTCCGCAACGTCCCGTGCGAGTTCATCGAGAACATGTCTC
CCGAGTACCCCGTGATCGTTGGGGGGTTGTTGCCCACCGAGCTGCGGTTTGGCATCATGAACGCG
CGGATCCGGCGCCACCGGTGGCACAAGAAGATCCTCAAGTCCCAG
Found at i:548141 original size:18 final size:18
Alignment explanation
Indices: 548118--548178 Score: 104
Period size: 18 Copynumber: 3.4 Consensus size: 18
548108 ATTATAGAAT
* *
548118 ACAGAGGGTAGAGAATAC
1 ACAGAGGCTAGAAAATAC
548136 ACAGAGGCTAGAAAATAC
1 ACAGAGGCTAGAAAATAC
548154 ACAGAGGCTAGAAAATAC
1 ACAGAGGCTAGAAAATAC
548172 ACAGAGG
1 ACAGAGG
548179 AGAGATGTAG
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 41 1.00
ACGTcount: A:0.48, C:0.15, G:0.28, T:0.10
Consensus pattern (18 bp):
ACAGAGGCTAGAAAATAC
Left flanking sequence: Indices 547618 -- 548117
CGTTGTTGTTGCGCGACAAGACCAACTGGCACGGGATGAGGCTCACGGGCGCGGTGCGTGCTGCC
AACGACATTGCCACCCCGTTGCGCGAGGACCTGGCCTACAAGAAGATCGAGCGTCCCGAGCGCAA
GTTCGCCCCGCTCAAGGTGCCTCGGGCGTTGAAGGCCAACTTGCCGTTCAAGTCGCAGATCAAGG
AGGCACGGCCCGCGACCAAGCAGTCCTACATGAACAAGCGGGCGGTGGTGTTGACCCAGGAGGAG
AAGAAGGAGCGCGACTTGTTGAACAAGATTGCCATGGTGCGCAAGGAGAAGGAGCAGAAGCGCAA
GGCCAAGAACGACGCCAAGTTCAAGGACAAGTTGAAGCTGTTGGCCAAGGAGGAGGAGATCAAGA
AGGACAAGGACCGCGAGCGCAAGAAGGCGTACTTCCAGAAGGAGGCCCGCAAGGCGGGCGGTGGC
GAAGCCGGCCCCCCTCCCAAGCGGTCGAGAAGATAATTATAGAAT
Right flanking sequence: Indices 548179 -- 548678
AGAGATGTAGGGATTACAAATTGGATTGGAAAGAGTTACTCCAAGAATAATCGATTAGTTTGGGC
TTGCACCAAAACTGAGCATTAAACGTCGATTGGTGTAAGCTTAGTATCAGTCGTTGCGACTGATT
GTAGAGAGCGAGCGTGGCACAAGTCAGGCAAGACCACAGCTAAAGTCATTGTAAGCTGAGTCGAC
ACAGATTGACTTAACTGCACACCCTCTTTAACTGCACACCTTCACTCATTATTCATCCTCTTGCC
TCGAGATTTACTCGGTGCTTCAGTTTCGGTTTGCAGCACTGTCCTGTCGCAAATTACCGCATTCG
GCCACTAAGCTCACACCAACATCCTCACACTAACACCTCACACACACCCCATTTTACCCTACTTC
ACTAATGTTCATTCGTTAAATAATTTACAACCGGTACTCGATCATCCGCTCGCCCGCCTTGACCA
CTTCGTCGTCGGGCCACACAAGCTTCATCACATCCAAAAACTCCT
Found at i:548544 original size:13 final size:14
Alignment explanation
Indices: 548513--548546 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
548503 GGCCACTAAG
548513 CTCACACCAACATC
1 CTCACACCAACATC
*
548527 CTCACACTAACA-C
1 CTCACACCAACATC
548540 CTCACAC
1 CTCACAC
548547 ACACCCCATT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 8 0.42
14 11 0.58
ACGTcount: A:0.35, C:0.50, G:0.00, T:0.15
Consensus pattern (14 bp):
CTCACACCAACATC
Left flanking sequence: Indices 548013 -- 548512
AAGGACCGCGAGCGCAAGAAGGCGTACTTCCAGAAGGAGGCCCGCAAGGCGGGCGGTGGCGAAGC
CGGCCCCCCTCCCAAGCGGTCGAGAAGATAATTATAGAATACAGAGGGTAGAGAATACACAGAGG
CTAGAAAATACACAGAGGCTAGAAAATACACAGAGGAGAGATGTAGGGATTACAAATTGGATTGG
AAAGAGTTACTCCAAGAATAATCGATTAGTTTGGGCTTGCACCAAAACTGAGCATTAAACGTCGA
TTGGTGTAAGCTTAGTATCAGTCGTTGCGACTGATTGTAGAGAGCGAGCGTGGCACAAGTCAGGC
AAGACCACAGCTAAAGTCATTGTAAGCTGAGTCGACACAGATTGACTTAACTGCACACCCTCTTT
AACTGCACACCTTCACTCATTATTCATCCTCTTGCCTCGAGATTTACTCGGTGCTTCAGTTTCGG
TTTGCAGCACTGTCCTGTCGCAAATTACCGCATTCGGCCACTAAG
Right flanking sequence: Indices 548547 -- 549046
ACACCCCATTTTACCCTACTTCACTAATGTTCATTCGTTAAATAATTTACAACCGGTACTCGATC
ATCCGCTCGCCCGCCTTGACCACTTCGTCGTCGGGCCACACAAGCTTCATCACATCCAAAAACTC
CTGGGCATAGTGCATCTGGATGCCGTACTTGTCGCGGTAAAAGTCCTCCACCTCGGTCATGGTGA
ACACCGGGGTGTCGTTGTCGTGGAGCAACGCGTTGGTGGTGGCGGTCAGCGGCTCGTGGCCCTCC
TCCTCGAGGTCGCGCAAGTACTCCTCAATCAAGTCCTTGCGGTTGTCGCGCGGGACAATCATCCG
CTTGATGTGCCCGTTCAAGTGGGCCCCCATCAACTTCTCCTTGACGCCGCCAATCGGCAACACCA
ACCCGCGCAACGTGATCTCGCCCGTCATGGCAATGTCCGCCGGCACCGGCTTGTCCATGAGCAAC
AGCAAAAACAGCAACGCCATGGTGATCCCCGCCAGCGGGCCGTCC
Found at i:550693 original size:3 final size:3
Alignment explanation
Indices: 550685--550717 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
550675 GGCGCGGAGC
550685 TCG TCG TCG TCG TCG TCG TCG TCG TCG TCG TCG
1 TCG TCG TCG TCG TCG TCG TCG TCG TCG TCG TCG
550718 CGCGTCGCCA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.00, C:0.33, G:0.33, T:0.33
Consensus pattern (3 bp):
TCG
Left flanking sequence: Indices 550185 -- 550684
GCTCGCCGTGGCCGTCGGCCTGGGTGGCCAGGTCCTCGAGCAGGGTGCGTGCCTGCTTCTTCACC
ATCAGCGTCTCGTCGGCGTTGGCAATGACAATCAGCAGCTCGTGGTCGGCGTCGGGTGCCGCCAC
GGGCTGCTGCGACGGCGCCTGGGCACGGCGGTCGGCGTTGATGCCCAACAACTTGAGCACCACGA
GGTACTGGATCAACCGCTTCTTGACGTGCTCCAACCCGTAGTGGTCGTCGTCCAACTGCAGCTTG
GCCACCTTGAGGTCGATCTCCTTGTTCAGGCGGAACTTGGTCACGTAGTGGTCCCAGGGAATGTC
CATGACAATCTCCAAGTAGTTGCGGATCACGTGGAAGTCCAGGTTGCCGCCGCCGGGGGTGTTGG
CGCTCAGCTTGATGCGCTTGTAGTCCTTGACAATGAGCCGCTTCAGCTCTGCCAGCAACCCGCGG
AGCTGCGGCAACCGCTGCTTGATAAACGTGGTGATGGCGCGGAGC
Right flanking sequence: Indices 550718 -- 551217
CGCGTCGCCAGCGGCTTGGGCTGGTAGCCGGGCTTCAACCCCGACCCGGCCGCGCGGGCGGGCGC
GCGCTTGTTTGTCATGCCCTCGAGCACCAACCGGATCAGCTTGAGCTGGTTGGCCACCACCGTGG
CCTTTTGGATGTTGGACGCCTCGGTGTTGAACCAGTGGTTGACGTAGGCGTTGTTGGCCAGCAAC
TGGACAAACACCTGCTGCAAGCGGCCCACCATCGCCAGCAACTCCAGCACGCGGGCCGCGGGTTT
CGCGAGCTGCAAAAACGCCAACTTTTCGTGGTTGGGGAACGGCAACACCCCGCACGTCAAGTCCA
ACAACCGCAAAAACGCCTTCGGGTCAATCACGTAGTTGGGGTTGTTGCCCAGGTACTGGCTGTAG
AGCTTCTGCAACAGCGCAAACGCCTTGCTGAAGTCCTTGTTGCCCACCAACTGGAGGTACAACGC
GTTGGCCACCGGGTTGAGGGTCAACAAGTCCAGCGGCGCCAGCAG
Found at i:553048 original size:31 final size:30
Alignment explanation
Indices: 553012--553107 Score: 95
Period size: 31 Copynumber: 3.1 Consensus size: 30
553002 CCCTTTCATT
*
553012 CCTACTACCCCTTCACCCTTAGTCCGTCCAC
1 CCTACTATCCCTTCACCCTTAGTCC-TCCAC
* * **
553043 CCTACTATCCCTTCCCCCTTGGTCCCTATAC
1 CCTACTATCCCTTCACCCTTAGT-CCTCCAC
* *
553074 CCTA-TATTCCTCCACCCTATAGTCCTCCAC
1 CCTACTATCCCTTCACCCT-TAGTCCTCCAC
553104 CCTA
1 CCTA
553108 TAGTCCTCCA
Statistics
Matches: 52, Mismatches: 11, Indels: 5
0.76 0.16 0.07
Matches are distributed among these distances:
30 20 0.38
31 30 0.58
32 2 0.04
ACGTcount: A:0.17, C:0.49, G:0.05, T:0.29
Consensus pattern (30 bp):
CCTACTATCCCTTCACCCTTAGTCCTCCAC
Left flanking sequence: Indices 552512 -- 553011
GTCACTGGCGAGGGGTGCGTGCGAGGATGCAAGCATGCGAGGCTGATCTGGAATAAGGTTGGGAG
TGTGGATGGGTGTGGGAAGGGTGTGGGAAGAGTGGTAGGGGAGTAATGGGGAGTGGTAGGGGAAT
AGGTGTGAGGAGAGGGGTGTGGGGTGTTGAGGAGTTGGTCAGGCCATGGGTTAGAGGGAGTTGTG
GAGAGTAGGTCTTGCGTAAGTCGCAGTAGTACACTGGGCATGTGAGCTGACGCAATGAGTAGAGT
AGTATGAAAAGTGAACTGAGAGTAGAACAGGCCCTTAGGCTGCTATTAGCCGTTCATCCCAGATG
CTATAGGGCCGTGTTGACTTTTGGTCGATTTTCCAGTTTCTCTGAAATTTCACAATTTGAAAGTG
TTGCTTGGCGATTGTACACCCTACCAGGTCATAAACCCCTACCAGGAACACCCTACTATCCCTTC
ACTTCGCCTTTTGTGCTAAAAGTCCCTTCTCTCATCCCTTTCATT
Right flanking sequence: Indices 553108 -- 553607
TAGTCCTCCACCCTACCAATCTTCACCCTACCAATCTCCACCCAACCAATCTTTCACCTCACCAG
CCCTTCACTCTGCCCCTCACCCTACGATTCTCCACCATTCCTTCCTGTCCTCATCCATTAGACCT
ACTATATACAAGTCACTGCTTGGTCTGCTTCTCAAGCACGTCCTTCAAGTTCACCTGGCCCGTGC
CCCGCGCCAACGGCTTGGGCTGCGAGTCGCTCTTCTTCCACCCAATCATGAAAATCACATTCACC
GTCGCCGGCAACGTGGTGACCCCGTCGTGCACCTCGCCGTGCAACAGCTTGTAGATCTCGTTGGC
CGCCAACAACACCTCGCGCGGCAAGAACAGCTCGCGGGTGTTGACGGCGTTCTGCTCGCCCATCA
ACTGGAGATCCTCCATCACCGCCACAATGTCGGGGTAGCCCCCAATGACAATCTCCTCCTGGTCG
ATGGTCAACATCGAAAACCCGGCCCGGTTGAGCAACGAGCCAATG
Found at i:553090 original size:15 final size:15
Alignment explanation
Indices: 553072--553122 Score: 93
Period size: 15 Copynumber: 3.4 Consensus size: 15
553062 TGGTCCCTAT
*
553072 ACCCTATATTCCTCC
1 ACCCTATAGTCCTCC
553087 ACCCTATAGTCCTCC
1 ACCCTATAGTCCTCC
553102 ACCCTATAGTCCTCC
1 ACCCTATAGTCCTCC
553117 ACCCTA
1 ACCCTA
553123 CCAATCTTCA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
15 35 1.00
ACGTcount: A:0.22, C:0.47, G:0.04, T:0.27
Consensus pattern (15 bp):
ACCCTATAGTCCTCC
Left flanking sequence: Indices 552572 -- 553071
GGGAGTGTGGATGGGTGTGGGAAGGGTGTGGGAAGAGTGGTAGGGGAGTAATGGGGAGTGGTAGG
GGAATAGGTGTGAGGAGAGGGGTGTGGGGTGTTGAGGAGTTGGTCAGGCCATGGGTTAGAGGGAG
TTGTGGAGAGTAGGTCTTGCGTAAGTCGCAGTAGTACACTGGGCATGTGAGCTGACGCAATGAGT
AGAGTAGTATGAAAAGTGAACTGAGAGTAGAACAGGCCCTTAGGCTGCTATTAGCCGTTCATCCC
AGATGCTATAGGGCCGTGTTGACTTTTGGTCGATTTTCCAGTTTCTCTGAAATTTCACAATTTGA
AAGTGTTGCTTGGCGATTGTACACCCTACCAGGTCATAAACCCCTACCAGGAACACCCTACTATC
CCTTCACTTCGCCTTTTGTGCTAAAAGTCCCTTCTCTCATCCCTTTCATTCCTACTACCCCTTCA
CCCTTAGTCCGTCCACCCTACTATCCCTTCCCCCTTGGTCCCTAT
Right flanking sequence: Indices 553123 -- 553622
CCAATCTTCACCCTACCAATCTCCACCCAACCAATCTTTCACCTCACCAGCCCTTCACTCTGCCC
CTCACCCTACGATTCTCCACCATTCCTTCCTGTCCTCATCCATTAGACCTACTATATACAAGTCA
CTGCTTGGTCTGCTTCTCAAGCACGTCCTTCAAGTTCACCTGGCCCGTGCCCCGCGCCAACGGCT
TGGGCTGCGAGTCGCTCTTCTTCCACCCAATCATGAAAATCACATTCACCGTCGCCGGCAACGTG
GTGACCCCGTCGTGCACCTCGCCGTGCAACAGCTTGTAGATCTCGTTGGCCGCCAACAACACCTC
GCGCGGCAAGAACAGCTCGCGGGTGTTGACGGCGTTCTGCTCGCCCATCAACTGGAGATCCTCCA
TCACCGCCACAATGTCGGGGTAGCCCCCAATGACAATCTCCTCCTGGTCGATGGTCAACATCGAA
AACCCGGCCCGGTTGAGCAACGAGCCAATGTCGTTCAAGTGGACC
Found at i:553107 original size:30 final size:29
Alignment explanation
Indices: 553025--553121 Score: 97
Period size: 30 Copynumber: 3.2 Consensus size: 29
553015 ACTACCCCTT
*
553025 CACCCTTAGTCCGTCCACCCTACTATCCCTTC
1 CACCCTTAGTCC-TCCACCCTA-TATTCC-TC
* **
553057 C-CCCTTGGTCCCTATACCCTATATTCCTC
1 CACCCTTAGT-CCTCCACCCTATATTCCTC
*
553086 CACCCTATAGTCCTCCACCCTATAGTCCTC
1 CACCCT-TAGTCCTCCACCCTATATTCCTC
553116 CACCCT
1 CACCCT
553122 ACCAATCTTC
Statistics
Matches: 54, Mismatches: 8, Indels: 8
0.77 0.11 0.11
Matches are distributed among these distances:
29 3 0.06
30 31 0.57
31 17 0.31
32 3 0.06
ACGTcount: A:0.16, C:0.48, G:0.06, T:0.29
Consensus pattern (29 bp):
CACCCTTAGTCCTCCACCCTATATTCCTC
Left flanking sequence: Indices 552525 -- 553024
GGTGCGTGCGAGGATGCAAGCATGCGAGGCTGATCTGGAATAAGGTTGGGAGTGTGGATGGGTGT
GGGAAGGGTGTGGGAAGAGTGGTAGGGGAGTAATGGGGAGTGGTAGGGGAATAGGTGTGAGGAGA
GGGGTGTGGGGTGTTGAGGAGTTGGTCAGGCCATGGGTTAGAGGGAGTTGTGGAGAGTAGGTCTT
GCGTAAGTCGCAGTAGTACACTGGGCATGTGAGCTGACGCAATGAGTAGAGTAGTATGAAAAGTG
AACTGAGAGTAGAACAGGCCCTTAGGCTGCTATTAGCCGTTCATCCCAGATGCTATAGGGCCGTG
TTGACTTTTGGTCGATTTTCCAGTTTCTCTGAAATTTCACAATTTGAAAGTGTTGCTTGGCGATT
GTACACCCTACCAGGTCATAAACCCCTACCAGGAACACCCTACTATCCCTTCACTTCGCCTTTTG
TGCTAAAAGTCCCTTCTCTCATCCCTTTCATTCCTACTACCCCTT
Right flanking sequence: Indices 553122 -- 553621
ACCAATCTTCACCCTACCAATCTCCACCCAACCAATCTTTCACCTCACCAGCCCTTCACTCTGCC
CCTCACCCTACGATTCTCCACCATTCCTTCCTGTCCTCATCCATTAGACCTACTATATACAAGTC
ACTGCTTGGTCTGCTTCTCAAGCACGTCCTTCAAGTTCACCTGGCCCGTGCCCCGCGCCAACGGC
TTGGGCTGCGAGTCGCTCTTCTTCCACCCAATCATGAAAATCACATTCACCGTCGCCGGCAACGT
GGTGACCCCGTCGTGCACCTCGCCGTGCAACAGCTTGTAGATCTCGTTGGCCGCCAACAACACCT
CGCGCGGCAAGAACAGCTCGCGGGTGTTGACGGCGTTCTGCTCGCCCATCAACTGGAGATCCTCC
ATCACCGCCACAATGTCGGGGTAGCCCCCAATGACAATCTCCTCCTGGTCGATGGTCAACATCGA
AAACCCGGCCCGGTTGAGCAACGAGCCAATGTCGTTCAAGTGGAC
Found at i:553134 original size:15 final size:15
Alignment explanation
Indices: 553116--553165 Score: 73
Period size: 15 Copynumber: 3.3 Consensus size: 15
553106 TATAGTCCTC
553116 CACCCTACCAATCTT
1 CACCCTACCAATCTT
*
553131 CACCCTACCAATCTC
1 CACCCTACCAATCTT
*
553146 CACCCAACCAATCTTT
1 CACCCTACCAATC-TT
553162 CACC
1 CACC
553166 TCACCAGCCC
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
15 26 0.84
16 5 0.16
ACGTcount: A:0.28, C:0.50, G:0.00, T:0.22
Consensus pattern (15 bp):
CACCCTACCAATCTT
Left flanking sequence: Indices 552616 -- 553115
GGAGTAATGGGGAGTGGTAGGGGAATAGGTGTGAGGAGAGGGGTGTGGGGTGTTGAGGAGTTGGT
CAGGCCATGGGTTAGAGGGAGTTGTGGAGAGTAGGTCTTGCGTAAGTCGCAGTAGTACACTGGGC
ATGTGAGCTGACGCAATGAGTAGAGTAGTATGAAAAGTGAACTGAGAGTAGAACAGGCCCTTAGG
CTGCTATTAGCCGTTCATCCCAGATGCTATAGGGCCGTGTTGACTTTTGGTCGATTTTCCAGTTT
CTCTGAAATTTCACAATTTGAAAGTGTTGCTTGGCGATTGTACACCCTACCAGGTCATAAACCCC
TACCAGGAACACCCTACTATCCCTTCACTTCGCCTTTTGTGCTAAAAGTCCCTTCTCTCATCCCT
TTCATTCCTACTACCCCTTCACCCTTAGTCCGTCCACCCTACTATCCCTTCCCCCTTGGTCCCTA
TACCCTATATTCCTCCACCCTATAGTCCTCCACCCTATAGTCCTC
Right flanking sequence: Indices 553166 -- 553665
TCACCAGCCCTTCACTCTGCCCCTCACCCTACGATTCTCCACCATTCCTTCCTGTCCTCATCCAT
TAGACCTACTATATACAAGTCACTGCTTGGTCTGCTTCTCAAGCACGTCCTTCAAGTTCACCTGG
CCCGTGCCCCGCGCCAACGGCTTGGGCTGCGAGTCGCTCTTCTTCCACCCAATCATGAAAATCAC
ATTCACCGTCGCCGGCAACGTGGTGACCCCGTCGTGCACCTCGCCGTGCAACAGCTTGTAGATCT
CGTTGGCCGCCAACAACACCTCGCGCGGCAAGAACAGCTCGCGGGTGTTGACGGCGTTCTGCTCG
CCCATCAACTGGAGATCCTCCATCACCGCCACAATGTCGGGGTAGCCCCCAATGACAATCTCCTC
CTGGTCGATGGTCAACATCGAAAACCCGGCCCGGTTGAGCAACGAGCCAATGTCGTTCAAGTGGA
CCAACGGACTCACCCGCGCGGCCATGCCCCCGCGCCGCTCAAGCT
Found at i:553135 original size:30 final size:30
Alignment explanation
Indices: 553072--553165 Score: 84
Period size: 30 Copynumber: 3.1 Consensus size: 30
553062 TGGTCCCTAT
* * * *
553072 ACCCTATATTCCTCCACCCTA-TAGTCCTCC
1 ACCCTATAATCCTCCACCCTACCAAT-CTTC
*
553102 ACCCTATAGTCCTCCACCCTACCAATCTTC
1 ACCCTATAATCCTCCACCCTACCAATCTTC
* *
553132 ACCCTACCAAT-CTCCACCCAACCAATCTTTC
1 ACCCTA-TAATCCTCCACCCTACCAATC-TTC
553163 ACC
1 ACC
553166 TCACCAGCCC
Statistics
Matches: 54, Mismatches: 7, Indels: 5
0.82 0.11 0.08
Matches are distributed among these distances:
30 44 0.81
31 10 0.19
ACGTcount: A:0.24, C:0.48, G:0.02, T:0.26
Consensus pattern (30 bp):
ACCCTATAATCCTCCACCCTACCAATCTTC
Left flanking sequence: Indices 552572 -- 553071
GGGAGTGTGGATGGGTGTGGGAAGGGTGTGGGAAGAGTGGTAGGGGAGTAATGGGGAGTGGTAGG
GGAATAGGTGTGAGGAGAGGGGTGTGGGGTGTTGAGGAGTTGGTCAGGCCATGGGTTAGAGGGAG
TTGTGGAGAGTAGGTCTTGCGTAAGTCGCAGTAGTACACTGGGCATGTGAGCTGACGCAATGAGT
AGAGTAGTATGAAAAGTGAACTGAGAGTAGAACAGGCCCTTAGGCTGCTATTAGCCGTTCATCCC
AGATGCTATAGGGCCGTGTTGACTTTTGGTCGATTTTCCAGTTTCTCTGAAATTTCACAATTTGA
AAGTGTTGCTTGGCGATTGTACACCCTACCAGGTCATAAACCCCTACCAGGAACACCCTACTATC
CCTTCACTTCGCCTTTTGTGCTAAAAGTCCCTTCTCTCATCCCTTTCATTCCTACTACCCCTTCA
CCCTTAGTCCGTCCACCCTACTATCCCTTCCCCCTTGGTCCCTAT
Right flanking sequence: Indices 553166 -- 553665
TCACCAGCCCTTCACTCTGCCCCTCACCCTACGATTCTCCACCATTCCTTCCTGTCCTCATCCAT
TAGACCTACTATATACAAGTCACTGCTTGGTCTGCTTCTCAAGCACGTCCTTCAAGTTCACCTGG
CCCGTGCCCCGCGCCAACGGCTTGGGCTGCGAGTCGCTCTTCTTCCACCCAATCATGAAAATCAC
ATTCACCGTCGCCGGCAACGTGGTGACCCCGTCGTGCACCTCGCCGTGCAACAGCTTGTAGATCT
CGTTGGCCGCCAACAACACCTCGCGCGGCAAGAACAGCTCGCGGGTGTTGACGGCGTTCTGCTCG
CCCATCAACTGGAGATCCTCCATCACCGCCACAATGTCGGGGTAGCCCCCAATGACAATCTCCTC
CTGGTCGATGGTCAACATCGAAAACCCGGCCCGGTTGAGCAACGAGCCAATGTCGTTCAAGTGGA
CCAACGGACTCACCCGCGCGGCCATGCCCCCGCGCCGCTCAAGCT
Found at i:566732 original size:20 final size:20
Alignment explanation
Indices: 566699--566763 Score: 73
Period size: 20 Copynumber: 3.4 Consensus size: 20
566689 TAAAGGGTAT
566699 GGGTAAA-A-GAAAGAGT-G
1 GGGTAAATACGAAAGAGTAG
*
566716 GGGATAATTACGAAAGAGTAG
1 GGG-TAAATACGAAAGAGTAG
* *
566737 GGGTAAATATGAAAGAGGAG
1 GGGTAAATACGAAAGAGTAG
566757 GGGTAAA
1 GGGTAAA
566764 ACTCAAATAG
Statistics
Matches: 40, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
17 3 0.08
18 3 0.08
19 1 0.03
20 29 0.73
21 4 0.10
ACGTcount: A:0.45, C:0.02, G:0.38, T:0.15
Consensus pattern (20 bp):
GGGTAAATACGAAAGAGTAG
Left flanking sequence: Indices 566199 -- 566698
GGCCCGCTGGTTTTTGGGGCCCGCTGCGGGCTACGTCGTTTCTACTGGGCCTGATCCGGATCCCC
AGGTGGTGACCAATTGTGGGGAACTCGCGCTTAGTCGCGTTTCGCATGCAGGTCAACGGCTGATC
TGAGTCGTCCCGGGAACCGCCTGCGGCTGCCGTGAGGTTCGTCGGGTACGCCGGCGGATGGCGTC
ATCTGGCGGCGGGGGGAGGGGTGGCGACTGCCGTGGTGCCCGGTGGATGCGGTGGTTGTCGCGCG
GAGCCTGCTCCCCTGTTCCGCGCTAACCTTGGCCAGCGGCGGACGAACGGAACTAGCCCGATGAT
GTAGTGTGATATGCTACCACGATAAACTGTCCCAATCCAGCGAATTCCGGCGGCAACCGCGCGCC
CGCCGAGTTTGACACGCCCAACTAGGCTTTTTCGGCGGGTTGATGGCAGGCAGCGTGCATAAAGT
CGGTGTTACCGGAAAGAGAACGGAAAGAGAACGACTAAAGGGTAT
Right flanking sequence: Indices 566764 -- 567263
ACTCAAATAGAAAAGAAGATGGATTACATTGCTGACTTGGTCTTCCATATCTCAAAGCACTATTC
GTGGAGACTATCAAGACCGTAGCCACACCAACCAGTAGTTATGCAATTAGCACCGAAAGACCCAA
TATAAACCCACTACCAGCCAATGCAACATCGCACTCCTTGTTTGCCCTTGTTTGCCCTTGTTTGC
CCTCGCTAAGCGCGACCACTTTAGGAAACCTTGCGACCACGATAAATGTCTGGCAAAAATCGGGG
GCTCAAGAGCCAACAATGGCCGCGATCTTCTGTATCCGGTAATTACACCCGCCCCAGGGAACCTT
CCGCCCCCCGATCTCGCTTCGCTCGGTTGCACGATCACCCTAAACCCTGGTTGTGTGTCCAGCCA
CAATGGTGGCGTGCACACTACCGGTGCCAAATGCTTCTCGAGCCCCGTGTCAGGGGCTCAATGGT
CATTGTTGTGCGGTCTTGGCAGTCGGACAAGATCACGGAGTGGCG
Found at i:566944 original size:10 final size:10
Alignment explanation
Indices: 566929--566961 Score: 66
Period size: 10 Copynumber: 3.3 Consensus size: 10
566919 ACATCGCACT
566929 CCTTGTTTGC
1 CCTTGTTTGC
566939 CCTTGTTTGC
1 CCTTGTTTGC
566949 CCTTGTTTGC
1 CCTTGTTTGC
566959 CCT
1 CCT
566962 CGCTAAGCGC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 23 1.00
ACGTcount: A:0.00, C:0.33, G:0.18, T:0.48
Consensus pattern (10 bp):
CCTTGTTTGC
Left flanking sequence: Indices 566429 -- 566928
GTGCCCGGTGGATGCGGTGGTTGTCGCGCGGAGCCTGCTCCCCTGTTCCGCGCTAACCTTGGCCA
GCGGCGGACGAACGGAACTAGCCCGATGATGTAGTGTGATATGCTACCACGATAAACTGTCCCAA
TCCAGCGAATTCCGGCGGCAACCGCGCGCCCGCCGAGTTTGACACGCCCAACTAGGCTTTTTCGG
CGGGTTGATGGCAGGCAGCGTGCATAAAGTCGGTGTTACCGGAAAGAGAACGGAAAGAGAACGAC
TAAAGGGTATGGGTAAAAGAAAGAGTGGGGATAATTACGAAAGAGTAGGGGTAAATATGAAAGAG
GAGGGGTAAAACTCAAATAGAAAAGAAGATGGATTACATTGCTGACTTGGTCTTCCATATCTCAA
AGCACTATTCGTGGAGACTATCAAGACCGTAGCCACACCAACCAGTAGTTATGCAATTAGCACCG
AAAGACCCAATATAAACCCACTACCAGCCAATGCAACATCGCACT
Right flanking sequence: Indices 566962 -- 567461
CGCTAAGCGCGACCACTTTAGGAAACCTTGCGACCACGATAAATGTCTGGCAAAAATCGGGGGCT
CAAGAGCCAACAATGGCCGCGATCTTCTGTATCCGGTAATTACACCCGCCCCAGGGAACCTTCCG
CCCCCCGATCTCGCTTCGCTCGGTTGCACGATCACCCTAAACCCTGGTTGTGTGTCCAGCCACAA
TGGTGGCGTGCACACTACCGGTGCCAAATGCTTCTCGAGCCCCGTGTCAGGGGCTCAATGGTCAT
TGTTGTGCGGTCTTGGCAGTCGGACAAGATCACGGAGTGGCGTCCACAGCGCCCACCCAGTCGTC
CCACGCACGCTCCCTACGTTCGTTGCCATTGTTCGGGGTGCCTTGATCACCCCACTCGTTAGGCA
AATATTATTTCGCTCGCTCCGTATCTCCACACGGCTCTCGAGGCAAGCCAACCCGACGACACCAC
CCGGAGCAGAGCACGGAGCTCGCCAATTGCGGGGTAACCGTGGCC
Found at i:577777 original size:45 final size:44
Alignment explanation
Indices: 577704--577789 Score: 118
Period size: 45 Copynumber: 1.9 Consensus size: 44
577694 TTTGGCTGTG
* *
577704 TAACCAAACCTGGTTTGATGAGTATTCCCAAGCTGCTGTGTCAC
1 TAACCAAACCTGGTTAGATGAGTATTCCCAAGCCGCTGTGTCAC
* * *
577748 TAACTAAACCTTGGTTAGTTGAGTTTTCCCAAGCCGCTGTGT
1 TAACCAAACC-TGGTTAGATGAGTATTCCCAAGCCGCTGTGT
577790 AACCATCTCT
Statistics
Matches: 36, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
44 9 0.25
45 27 0.75
ACGTcount: A:0.23, C:0.23, G:0.21, T:0.33
Consensus pattern (44 bp):
TAACCAAACCTGGTTAGATGAGTATTCCCAAGCCGCTGTGTCAC
Left flanking sequence: Indices 577204 -- 577703
CAAGACGATGTCTGCCATTGAGCAGGTGACTGCGCGTGACGGGCGGCCGATTGTGGTGTGCAACA
AGGGCGATCTGATCACCCAGAACGACAAGATCTTTGCCACGTTGGAGGTGCCCGAGACCGTGGAC
TGTTTGCAGGGGTTGTTGAACGTGATTCCCATGCAGTTGATGCTGTACTGGTTGGCGGTGAACCG
TGGTGAGGATGTGGATTTCCCGAGAAACTTGGCCAAGTCGGTGACGGTGGAGTAAGGGTTTAATG
ATAATGTATTAAATAAATGAAATAGAGAGTGTGAGGGGGGTGTGAGAGGGGTGTGTGGAGAAGGG
TGGAGATGGTGGAGGGAGAAGTTTGCCTGGTGGGTATACGAGTGGGTTGAAGGTAGTAGGTGGTG
TCAGGCGGGTGTGTGCGCTAGGTTCGTGGGGTACTAATAGAGTATTAGCTGTTACGATTGATGAA
TCATTTGGAACTAGTCTTTGGCTAAGTAGCCATTCTTTGGCTGTG
Right flanking sequence: Indices 577790 -- 578289
AACCATCTCTGGCTTGTACCATTTCTTGCTTGCAACCATTTTGGCTTGTAACCACTATGGCTTCT
AACCATTCTGGCTTCTAACCACATCCTGGCTTGTAACCATTACGTTATGCTAACATCATTAGCCA
AAATAGATTTCTACGGTATTTTAATGCCTATTGCAACTGCATTCCTTGGCCCTGACAATTCCTTG
GCTTAACCAAACCCCGGCCTGTAACCGCTCCTATCCCCCACTCTTGTTCCCACGCGGTCCACCTG
AAATTTGGTTGTATGGGAGAAACACGCGTGGGTCACACGAGGCCATCCGTTCGTGACGCCAACCC
ACCCGTCGCCAACCCACTCATGACGCCAAACAACCGTGACGCCCACCCGTGACGCCCACCCACCC
GTGACGCTCCCTCACCCGTGACGCTCACGTCGCACGTAACACTCAACCCACTCTTTTGCCACTAC
GGTCTATTGGCCCATGTCCCGCAAAAAATTACCACATTAAAACCA
Found at i:577842 original size:16 final size:16
Alignment explanation
Indices: 577787--577895 Score: 103
Period size: 16 Copynumber: 6.6 Consensus size: 16
577777 CAAGCCGCTG
577787 TGTAACCATCTCTGGCT
1 TGTAACCAT-TCTGGCT
*
577804 TGT-ACCATTTCTTGCT
1 TGTAACCA-TTCTGGCT
* *
577820 TGCAACCATTTTGGCT
1 TGTAACCATTCTGGCT
* *
577836 TGTAACCACTATGGCT
1 TGTAACCATTCTGGCT
*
577852 TCTAACCATTCTGGCT
1 TGTAACCATTCTGGCT
* *
577868 TCTAACCACATCCTGGCT
1 TGTAA-C-CATTCTGGCT
577886 TGTAACCATT
1 TGTAACCATT
577896 ACGTTATGCT
Statistics
Matches: 75, Mismatches: 13, Indels: 9
0.77 0.13 0.09
Matches are distributed among these distances:
16 52 0.69
17 10 0.13
18 13 0.17
ACGTcount: A:0.20, C:0.28, G:0.15, T:0.37
Consensus pattern (16 bp):
TGTAACCATTCTGGCT
Left flanking sequence: Indices 577287 -- 577786
AGAACGACAAGATCTTTGCCACGTTGGAGGTGCCCGAGACCGTGGACTGTTTGCAGGGGTTGTTG
AACGTGATTCCCATGCAGTTGATGCTGTACTGGTTGGCGGTGAACCGTGGTGAGGATGTGGATTT
CCCGAGAAACTTGGCCAAGTCGGTGACGGTGGAGTAAGGGTTTAATGATAATGTATTAAATAAAT
GAAATAGAGAGTGTGAGGGGGGTGTGAGAGGGGTGTGTGGAGAAGGGTGGAGATGGTGGAGGGAG
AAGTTTGCCTGGTGGGTATACGAGTGGGTTGAAGGTAGTAGGTGGTGTCAGGCGGGTGTGTGCGC
TAGGTTCGTGGGGTACTAATAGAGTATTAGCTGTTACGATTGATGAATCATTTGGAACTAGTCTT
TGGCTAAGTAGCCATTCTTTGGCTGTGTAACCAAACCTGGTTTGATGAGTATTCCCAAGCTGCTG
TGTCACTAACTAAACCTTGGTTAGTTGAGTTTTCCCAAGCCGCTG
Right flanking sequence: Indices 577896 -- 578395
ACGTTATGCTAACATCATTAGCCAAAATAGATTTCTACGGTATTTTAATGCCTATTGCAACTGCA
TTCCTTGGCCCTGACAATTCCTTGGCTTAACCAAACCCCGGCCTGTAACCGCTCCTATCCCCCAC
TCTTGTTCCCACGCGGTCCACCTGAAATTTGGTTGTATGGGAGAAACACGCGTGGGTCACACGAG
GCCATCCGTTCGTGACGCCAACCCACCCGTCGCCAACCCACTCATGACGCCAAACAACCGTGACG
CCCACCCGTGACGCCCACCCACCCGTGACGCTCCCTCACCCGTGACGCTCACGTCGCACGTAACA
CTCAACCCACTCTTTTGCCACTACGGTCTATTGGCCCATGTCCCGCAAAAAATTACCACATTAAA
ACCACCCACACTTCTCCACCCTTCTCCACCACTCTCCACTACACCCCCTCCACCCCCTTCCCCTC
GTCAGCCTAACAAATATGATATTAAATAAATACTACAACTACTTG
Found at i:577885 original size:18 final size:18
Alignment explanation
Indices: 577847--577893 Score: 62
Period size: 18 Copynumber: 2.7 Consensus size: 18
577837 GTAACCACTA
*
577847 TGGCTTCTAA-C-CATTC
1 TGGCTTCTAACCACATCC
577863 TGGCTTCTAACCACATCC
1 TGGCTTCTAACCACATCC
*
577881 TGGCTTGTAACCA
1 TGGCTTCTAACCA
577894 TTACGTTATG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
16 10 0.37
17 1 0.04
18 16 0.59
ACGTcount: A:0.21, C:0.32, G:0.15, T:0.32
Consensus pattern (18 bp):
TGGCTTCTAACCACATCC
Left flanking sequence: Indices 577347 -- 577846
TGTTGAACGTGATTCCCATGCAGTTGATGCTGTACTGGTTGGCGGTGAACCGTGGTGAGGATGTG
GATTTCCCGAGAAACTTGGCCAAGTCGGTGACGGTGGAGTAAGGGTTTAATGATAATGTATTAAA
TAAATGAAATAGAGAGTGTGAGGGGGGTGTGAGAGGGGTGTGTGGAGAAGGGTGGAGATGGTGGA
GGGAGAAGTTTGCCTGGTGGGTATACGAGTGGGTTGAAGGTAGTAGGTGGTGTCAGGCGGGTGTG
TGCGCTAGGTTCGTGGGGTACTAATAGAGTATTAGCTGTTACGATTGATGAATCATTTGGAACTA
GTCTTTGGCTAAGTAGCCATTCTTTGGCTGTGTAACCAAACCTGGTTTGATGAGTATTCCCAAGC
TGCTGTGTCACTAACTAAACCTTGGTTAGTTGAGTTTTCCCAAGCCGCTGTGTAACCATCTCTGG
CTTGTACCATTTCTTGCTTGCAACCATTTTGGCTTGTAACCACTA
Right flanking sequence: Indices 577894 -- 578393
TTACGTTATGCTAACATCATTAGCCAAAATAGATTTCTACGGTATTTTAATGCCTATTGCAACTG
CATTCCTTGGCCCTGACAATTCCTTGGCTTAACCAAACCCCGGCCTGTAACCGCTCCTATCCCCC
ACTCTTGTTCCCACGCGGTCCACCTGAAATTTGGTTGTATGGGAGAAACACGCGTGGGTCACACG
AGGCCATCCGTTCGTGACGCCAACCCACCCGTCGCCAACCCACTCATGACGCCAAACAACCGTGA
CGCCCACCCGTGACGCCCACCCACCCGTGACGCTCCCTCACCCGTGACGCTCACGTCGCACGTAA
CACTCAACCCACTCTTTTGCCACTACGGTCTATTGGCCCATGTCCCGCAAAAAATTACCACATTA
AAACCACCCACACTTCTCCACCCTTCTCCACCACTCTCCACTACACCCCCTCCACCCCCTTCCCC
TCGTCAGCCTAACAAATATGATATTAAATAAATACTACAACTACT
Found at i:578166 original size:13 final size:13
Alignment explanation
Indices: 578148--578175 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
578138 CGCCAAACAA
578148 CCGTGACGCCCAC
1 CCGTGACGCCCAC
578161 CCGTGACGCCCAC
1 CCGTGACGCCCAC
578174 CC
1 CC
578176 ACCCGTGACG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.14, C:0.57, G:0.21, T:0.07
Consensus pattern (13 bp):
CCGTGACGCCCAC
Left flanking sequence: Indices 577648 -- 578147
CGATTGATGAATCATTTGGAACTAGTCTTTGGCTAAGTAGCCATTCTTTGGCTGTGTAACCAAAC
CTGGTTTGATGAGTATTCCCAAGCTGCTGTGTCACTAACTAAACCTTGGTTAGTTGAGTTTTCCC
AAGCCGCTGTGTAACCATCTCTGGCTTGTACCATTTCTTGCTTGCAACCATTTTGGCTTGTAACC
ACTATGGCTTCTAACCATTCTGGCTTCTAACCACATCCTGGCTTGTAACCATTACGTTATGCTAA
CATCATTAGCCAAAATAGATTTCTACGGTATTTTAATGCCTATTGCAACTGCATTCCTTGGCCCT
GACAATTCCTTGGCTTAACCAAACCCCGGCCTGTAACCGCTCCTATCCCCCACTCTTGTTCCCAC
GCGGTCCACCTGAAATTTGGTTGTATGGGAGAAACACGCGTGGGTCACACGAGGCCATCCGTTCG
TGACGCCAACCCACCCGTCGCCAACCCACTCATGACGCCAAACAA
Right flanking sequence: Indices 578176 -- 578675
ACCCGTGACGCTCCCTCACCCGTGACGCTCACGTCGCACGTAACACTCAACCCACTCTTTTGCCA
CTACGGTCTATTGGCCCATGTCCCGCAAAAAATTACCACATTAAAACCACCCACACTTCTCCACC
CTTCTCCACCACTCTCCACTACACCCCCTCCACCCCCTTCCCCTCGTCAGCCTAACAAATATGAT
ATTAAATAAATACTACAACTACTTGCGGTCAAAGTAGTCCGACCCGCCAAAGTACGCCACGCTCC
AGTCGTACACCCGGTCGCCAATCCGCAAGTACTGGTTGGTGTAGTCGCGAACCGTCTCGTTCTCG
ATCTTCTCGGTGGCAGGCATGAGCCCCGTGTTGCGCTTGACGCCCGCAAGGAACGCCAGAACCAA
AACCAAGTCAAAGCCAATGTGGGCCGCCTTGGTGATAGTACCCATGGTGATGCCGCCCTCACGAG
TTTTTCCATGCGTTTTGTAGCGGGACCCGTGGCCTGTGTGCAGGC
Found at i:578178 original size:17 final size:17
Alignment explanation
Indices: 578156--578205 Score: 75
Period size: 17 Copynumber: 2.9 Consensus size: 17
578146 AACCGTGACG
578156 CCCACCCGTGACGC-CC
1 CCCACCCGTGACGCTCC
578172 ACCCACCCGTGACGCTCC
1 -CCCACCCGTGACGCTCC
*
578190 CTCACCCGTGACGCTC
1 CCCACCCGTGACGCTC
578206 ACGTCGCACG
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
17 29 0.94
18 2 0.06
ACGTcount: A:0.14, C:0.56, G:0.18, T:0.12
Consensus pattern (17 bp):
CCCACCCGTGACGCTCC
Left flanking sequence: Indices 577656 -- 578155
GAATCATTTGGAACTAGTCTTTGGCTAAGTAGCCATTCTTTGGCTGTGTAACCAAACCTGGTTTG
ATGAGTATTCCCAAGCTGCTGTGTCACTAACTAAACCTTGGTTAGTTGAGTTTTCCCAAGCCGCT
GTGTAACCATCTCTGGCTTGTACCATTTCTTGCTTGCAACCATTTTGGCTTGTAACCACTATGGC
TTCTAACCATTCTGGCTTCTAACCACATCCTGGCTTGTAACCATTACGTTATGCTAACATCATTA
GCCAAAATAGATTTCTACGGTATTTTAATGCCTATTGCAACTGCATTCCTTGGCCCTGACAATTC
CTTGGCTTAACCAAACCCCGGCCTGTAACCGCTCCTATCCCCCACTCTTGTTCCCACGCGGTCCA
CCTGAAATTTGGTTGTATGGGAGAAACACGCGTGGGTCACACGAGGCCATCCGTTCGTGACGCCA
ACCCACCCGTCGCCAACCCACTCATGACGCCAAACAACCGTGACG
Right flanking sequence: Indices 578206 -- 578705
ACGTCGCACGTAACACTCAACCCACTCTTTTGCCACTACGGTCTATTGGCCCATGTCCCGCAAAA
AATTACCACATTAAAACCACCCACACTTCTCCACCCTTCTCCACCACTCTCCACTACACCCCCTC
CACCCCCTTCCCCTCGTCAGCCTAACAAATATGATATTAAATAAATACTACAACTACTTGCGGTC
AAAGTAGTCCGACCCGCCAAAGTACGCCACGCTCCAGTCGTACACCCGGTCGCCAATCCGCAAGT
ACTGGTTGGTGTAGTCGCGAACCGTCTCGTTCTCGATCTTCTCGGTGGCAGGCATGAGCCCCGTG
TTGCGCTTGACGCCCGCAAGGAACGCCAGAACCAAAACCAAGTCAAAGCCAATGTGGGCCGCCTT
GGTGATAGTACCCATGGTGATGCCGCCCTCACGAGTTTTTCCATGCGTTTTGTAGCGGGACCCGT
GGCCTGTGTGCAGGCGGTCGTCATGCGCGACATCAGTGGCGTCGA
Found at i:579474 original size:21 final size:22
Alignment explanation
Indices: 579436--579481 Score: 76
Period size: 21 Copynumber: 2.1 Consensus size: 22
579426 CGGCCGCCCG
*
579436 CGGGCCCTGCTGGCGCACCCAC
1 CGGGCCCTGCTGGAGCACCCAC
579458 CGGGCCC-GCTGGAGCACCCAC
1 CGGGCCCTGCTGGAGCACCCAC
579479 CGG
1 CGG
579482 CCCAGCAGGC
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 16 0.70
22 7 0.30
ACGTcount: A:0.11, C:0.48, G:0.35, T:0.07
Consensus pattern (22 bp):
CGGGCCCTGCTGGAGCACCCAC
Left flanking sequence: Indices 578936 -- 579435
AAGACTGAGGACCCCAGCCCTAGGTTTCGCCGTGGCCTCTCTACGGGCTTCTACTTCCCCCTGGT
GTTGGCTCGCCTGCCGGCGTGCCTTACCTAATGCGCGCCACCAGAACAAAATTTTCTTACGGTTC
AGAGGAGCAGCGATACACATGTCGGACAGATACCGCCCCACAGGCCCTCGAGGCAGTCGCGACTA
CAACCTGGAGCCGCGTGGCGACCGGCGGGTGCCGCGGGGCGACTCGTACCGCGACTCGTACCAGC
CGGTGCGCGACCGTGCCGACCGTCGCGACCGCCACGACGGGCCCAGCAGCTACGACAACTACCGG
CGCCAGCGCGACGAGCCGGACCGAGACAGAGACTCGTGGGACTCTAGGGGACCGCGCGAGCCCTA
CCGCCGCCGCGGCGAGCGCGACCAGTACCGCCCGTACGACCGCGACGTGCCCAGTGGCGACAAGC
GGCGGGCTCCGCCCCTGGGCCCGGCAGCCAAGCGGCGGCCGCCCG
Right flanking sequence: Indices 579482 -- 579981
CCCAGCAGGCGCACCGTCGGGCCCGGCAGGCGCACCGTCAGGCCCAGCTGCCACCCGGGCACCTC
CCGCGGGCCCCAAGGCCGCGCCCAGCGGGCCCAAGGCCACCACGGGACCCAAGGCCTCCACCGGA
CCCAAGGTCCCGCCCAAGCCCACCGCCCGCCCGCCCAAACGCGCGCCGCGCAAGTTGGCGCCGCA
CCAGCTCTACCTGGTGCAAACTAGCATGCCCGAGATCTACAAACGCACCCAGCAGGTGGGCGAGG
GCACCTACGGCAAGGTGTACAAGGCGGTGAACCAGGTGACCCACGAGTTTGTGGCGCTCAAGCGG
TTGCGGCTCGAGCTGGAGCGCGAGGGGTTCCCCATCACCGCCATCCGCGAGATCAAGCTCTTGCA
GCTGTTCGACCACCCCAACATCGTGCTGTTGTACGAGATGATGGTGGAGCACCACCAGGTGTACA
TGATTTTCGACTACTGCGACCACGACTTGATGGGCCTCTTGCTGC
Found at i:579495 original size:21 final size:20
Alignment explanation
Indices: 579447--579517 Score: 70
Period size: 21 Copynumber: 3.4 Consensus size: 20
579437 GGGCCCTGCT
*
579447 GGCGCACCCACCGGGCCCGCT
1 GGCGCACCCACC-GGCCCGCA
*
579468 GGAGCACCCACCGGCCCAGCA
1 GGCGCACCCACCGGCCC-GCA
** *
579489 GGCGCACCGTCGGGCCCGGCA
1 GGCGCACCCACCGGCCC-GCA
579510 GGCGCACC
1 GGCGCACC
579518 GTCAGGCCCA
Statistics
Matches: 42, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
20 5 0.12
21 37 0.88
ACGTcount: A:0.14, C:0.48, G:0.35, T:0.03
Consensus pattern (20 bp):
GGCGCACCCACCGGCCCGCA
Left flanking sequence: Indices 578947 -- 579446
CCCCAGCCCTAGGTTTCGCCGTGGCCTCTCTACGGGCTTCTACTTCCCCCTGGTGTTGGCTCGCC
TGCCGGCGTGCCTTACCTAATGCGCGCCACCAGAACAAAATTTTCTTACGGTTCAGAGGAGCAGC
GATACACATGTCGGACAGATACCGCCCCACAGGCCCTCGAGGCAGTCGCGACTACAACCTGGAGC
CGCGTGGCGACCGGCGGGTGCCGCGGGGCGACTCGTACCGCGACTCGTACCAGCCGGTGCGCGAC
CGTGCCGACCGTCGCGACCGCCACGACGGGCCCAGCAGCTACGACAACTACCGGCGCCAGCGCGA
CGAGCCGGACCGAGACAGAGACTCGTGGGACTCTAGGGGACCGCGCGAGCCCTACCGCCGCCGCG
GCGAGCGCGACCAGTACCGCCCGTACGACCGCGACGTGCCCAGTGGCGACAAGCGGCGGGCTCCG
CCCCTGGGCCCGGCAGCCAAGCGGCGGCCGCCCGCGGGCCCTGCT
Right flanking sequence: Indices 579518 -- 580017
GTCAGGCCCAGCTGCCACCCGGGCACCTCCCGCGGGCCCCAAGGCCGCGCCCAGCGGGCCCAAGG
CCACCACGGGACCCAAGGCCTCCACCGGACCCAAGGTCCCGCCCAAGCCCACCGCCCGCCCGCCC
AAACGCGCGCCGCGCAAGTTGGCGCCGCACCAGCTCTACCTGGTGCAAACTAGCATGCCCGAGAT
CTACAAACGCACCCAGCAGGTGGGCGAGGGCACCTACGGCAAGGTGTACAAGGCGGTGAACCAGG
TGACCCACGAGTTTGTGGCGCTCAAGCGGTTGCGGCTCGAGCTGGAGCGCGAGGGGTTCCCCATC
ACCGCCATCCGCGAGATCAAGCTCTTGCAGCTGTTCGACCACCCCAACATCGTGCTGTTGTACGA
GATGATGGTGGAGCACCACCAGGTGTACATGATTTTCGACTACTGCGACCACGACTTGATGGGCC
TCTTGCTGCACCCCGAGATCGAGTTGGAGGAGAGCCACCGCAAGT
Found at i:579518 original size:21 final size:21
Alignment explanation
Indices: 579480--579529 Score: 82
Period size: 21 Copynumber: 2.4 Consensus size: 21
579470 AGCACCCACC
*
579480 GGCCCAGCAGGCGCACCGTCG
1 GGCCCAGCAGGCGCACCGTCA
*
579501 GGCCCGGCAGGCGCACCGTCA
1 GGCCCAGCAGGCGCACCGTCA
579522 GGCCCAGC
1 GGCCCAGC
579530 TGCCACCCGG
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.14, C:0.44, G:0.38, T:0.04
Consensus pattern (21 bp):
GGCCCAGCAGGCGCACCGTCA
Left flanking sequence: Indices 578980 -- 579479
GGGCTTCTACTTCCCCCTGGTGTTGGCTCGCCTGCCGGCGTGCCTTACCTAATGCGCGCCACCAG
AACAAAATTTTCTTACGGTTCAGAGGAGCAGCGATACACATGTCGGACAGATACCGCCCCACAGG
CCCTCGAGGCAGTCGCGACTACAACCTGGAGCCGCGTGGCGACCGGCGGGTGCCGCGGGGCGACT
CGTACCGCGACTCGTACCAGCCGGTGCGCGACCGTGCCGACCGTCGCGACCGCCACGACGGGCCC
AGCAGCTACGACAACTACCGGCGCCAGCGCGACGAGCCGGACCGAGACAGAGACTCGTGGGACTC
TAGGGGACCGCGCGAGCCCTACCGCCGCCGCGGCGAGCGCGACCAGTACCGCCCGTACGACCGCG
ACGTGCCCAGTGGCGACAAGCGGCGGGCTCCGCCCCTGGGCCCGGCAGCCAAGCGGCGGCCGCCC
GCGGGCCCTGCTGGCGCACCCACCGGGCCCGCTGGAGCACCCACC
Right flanking sequence: Indices 579530 -- 580029
TGCCACCCGGGCACCTCCCGCGGGCCCCAAGGCCGCGCCCAGCGGGCCCAAGGCCACCACGGGAC
CCAAGGCCTCCACCGGACCCAAGGTCCCGCCCAAGCCCACCGCCCGCCCGCCCAAACGCGCGCCG
CGCAAGTTGGCGCCGCACCAGCTCTACCTGGTGCAAACTAGCATGCCCGAGATCTACAAACGCAC
CCAGCAGGTGGGCGAGGGCACCTACGGCAAGGTGTACAAGGCGGTGAACCAGGTGACCCACGAGT
TTGTGGCGCTCAAGCGGTTGCGGCTCGAGCTGGAGCGCGAGGGGTTCCCCATCACCGCCATCCGC
GAGATCAAGCTCTTGCAGCTGTTCGACCACCCCAACATCGTGCTGTTGTACGAGATGATGGTGGA
GCACCACCAGGTGTACATGATTTTCGACTACTGCGACCACGACTTGATGGGCCTCTTGCTGCACC
CCGAGATCGAGTTGGAGGAGAGCCACCGCAAGTTTTTGTTCCGCC
Found at i:579599 original size:18 final size:18
Alignment explanation
Indices: 579572--579618 Score: 69
Period size: 18 Copynumber: 2.7 Consensus size: 18
579562 CCGCGCCCAG
579572 CGGG-CCCAAGGCCACCA
1 CGGGACCCAAGGCCACCA
*
579589 CGGGACCCAAGGCCTCCA
1 CGGGACCCAAGGCCACCA
*
579607 CCGGACCCAAGG
1 CGGGACCCAAGG
579619 TCCCGCCCAA
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
17 4 0.15
18 23 0.85
ACGTcount: A:0.23, C:0.45, G:0.30, T:0.02
Consensus pattern (18 bp):
CGGGACCCAAGGCCACCA
Left flanking sequence: Indices 579072 -- 579571
GCAGCGATACACATGTCGGACAGATACCGCCCCACAGGCCCTCGAGGCAGTCGCGACTACAACCT
GGAGCCGCGTGGCGACCGGCGGGTGCCGCGGGGCGACTCGTACCGCGACTCGTACCAGCCGGTGC
GCGACCGTGCCGACCGTCGCGACCGCCACGACGGGCCCAGCAGCTACGACAACTACCGGCGCCAG
CGCGACGAGCCGGACCGAGACAGAGACTCGTGGGACTCTAGGGGACCGCGCGAGCCCTACCGCCG
CCGCGGCGAGCGCGACCAGTACCGCCCGTACGACCGCGACGTGCCCAGTGGCGACAAGCGGCGGG
CTCCGCCCCTGGGCCCGGCAGCCAAGCGGCGGCCGCCCGCGGGCCCTGCTGGCGCACCCACCGGG
CCCGCTGGAGCACCCACCGGCCCAGCAGGCGCACCGTCGGGCCCGGCAGGCGCACCGTCAGGCCC
AGCTGCCACCCGGGCACCTCCCGCGGGCCCCAAGGCCGCGCCCAG
Right flanking sequence: Indices 579619 -- 580118
TCCCGCCCAAGCCCACCGCCCGCCCGCCCAAACGCGCGCCGCGCAAGTTGGCGCCGCACCAGCTC
TACCTGGTGCAAACTAGCATGCCCGAGATCTACAAACGCACCCAGCAGGTGGGCGAGGGCACCTA
CGGCAAGGTGTACAAGGCGGTGAACCAGGTGACCCACGAGTTTGTGGCGCTCAAGCGGTTGCGGC
TCGAGCTGGAGCGCGAGGGGTTCCCCATCACCGCCATCCGCGAGATCAAGCTCTTGCAGCTGTTC
GACCACCCCAACATCGTGCTGTTGTACGAGATGATGGTGGAGCACCACCAGGTGTACATGATTTT
CGACTACTGCGACCACGACTTGATGGGCCTCTTGCTGCACCCCGAGATCGAGTTGGAGGAGAGCC
ACCGCAAGTTTTTGTTCCGCCAGTTGATGGAGGGACTCAACTACCTACACAAAAAACGGGTGATC
CACCGCGACATCAAGGGGCTGAACATCTTGCTCGATGCGCTGGGC
Found at i:583244 original size:18 final size:18
Alignment explanation
Indices: 583194--583245 Score: 77
Period size: 18 Copynumber: 2.9 Consensus size: 18
583184 ATCAACTGGT
583194 ACGTAGCCAACTGGTGTG
1 ACGTAGCCAACTGGTGTG
* * *
583212 ACGGAGCTAATTGGTGTG
1 ACGTAGCCAACTGGTGTG
583230 ACGTAGCCAACTGGTG
1 ACGTAGCCAACTGGTG
583246 CAAACTGTAG
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
18 28 1.00
ACGTcount: A:0.23, C:0.19, G:0.35, T:0.23
Consensus pattern (18 bp):
ACGTAGCCAACTGGTGTG
Left flanking sequence: Indices 582694 -- 583193
CCGACAAGCTCAAGTACCTGCCGTTGGAGAACCACTTCCCCGACTACACCGGGGGCGACAACATC
AACAAGGCCGCCAAGTACATTTTGTGGCGGTTCACCCAGCAGAACCGCCTGGGACTCAACATCTA
CCCGCACGTCACCCAGGCCACCGACACCTCCAACATCCAGCTAGTGTTTGCCGCCGTCAAGGAGA
CGATTTTGGAGAACTCCCTCAAGGACTCCGGGCTTCTTTGAGGCTCTTGCATGCTAATTTATTCA
GTTCCGTCCGCGCGCCGGCCGCGGGTCGCTTATGCCGCCGGGCCGGTGCCCGAGTATTTAACCGT
AACCTTTGGGGCCCTGAGCCCGCCGGTGTCCGGGCCGCCCCCGCTAATCAGTAGTTGTATACCAA
TGTACGCTCTAGAGACCGAAGGCAGCTGTGAGCTTGTGGGATAACCAGTGGTACCAGTGGGTAAG
AGGTGGTGCGAATTGGTAGAATTACTGGTGACGCAATCAACTGGT
Right flanking sequence: Indices 583246 -- 583745
CAAACTGTAGAGCCAACTGGTTCGAACAGAGCCTAGAATAGCCTCAACTGGTGCAAATAGCCAAT
TGGTTCGCGGACAATGCTTGTTACAAAGTCTAAATACGTCATAGGAAATAGTCAACTACTAGACA
ATATCTTTTATGGTACCTAGAGCTGTATGTACACGCCAAGTGGTATGGTCAATCGTGCCTGTGTA
TTCAGAGCCTATGTATCTATAAGTTGTATGATTACTCGGAAGCCGCAGGGGCCGAGGGCTTAGGG
GGAGAGGTTTCTCTGGGCTTGGGAGAGCTTTCTCTGGGCTGGGAAGGCTTGGGAGAAGATTCTTT
AGGAGGCTTGGGCGTGGATTCCTGAGGCTTGGGTGTGGATTCCTGAGGCTTGGGAGACGGTTCCC
TGGGCTTGGGAGACGACTCCCTGGGCTTGGACGGGGCTTCTCTGGGCTTGGGAGACGATTCCTTA
GGCTTCGAAGACTCCTGAGGCTTGGGCGAAGCGGCCTTGGCCTTG
Found at i:583555 original size:20 final size:21
Alignment explanation
Indices: 583505--583549 Score: 74
Period size: 21 Copynumber: 2.2 Consensus size: 21
583495 AGGGCTTAGG
*
583505 GGGAGAGGTTTCTCTGGGCTT
1 GGGAGAGCTTTCTCTGGGCTT
583526 GGGAGAGCTTTCTCTGGGC-T
1 GGGAGAGCTTTCTCTGGGCTT
583546 GGGA
1 GGGA
583550 AGGCTTGGGA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
20 5 0.22
21 18 0.78
ACGTcount: A:0.11, C:0.16, G:0.44, T:0.29
Consensus pattern (21 bp):
GGGAGAGCTTTCTCTGGGCTT
Left flanking sequence: Indices 583005 -- 583504
GAGTATTTAACCGTAACCTTTGGGGCCCTGAGCCCGCCGGTGTCCGGGCCGCCCCCGCTAATCAG
TAGTTGTATACCAATGTACGCTCTAGAGACCGAAGGCAGCTGTGAGCTTGTGGGATAACCAGTGG
TACCAGTGGGTAAGAGGTGGTGCGAATTGGTAGAATTACTGGTGACGCAATCAACTGGTACGTAG
CCAACTGGTGTGACGGAGCTAATTGGTGTGACGTAGCCAACTGGTGCAAACTGTAGAGCCAACTG
GTTCGAACAGAGCCTAGAATAGCCTCAACTGGTGCAAATAGCCAATTGGTTCGCGGACAATGCTT
GTTACAAAGTCTAAATACGTCATAGGAAATAGTCAACTACTAGACAATATCTTTTATGGTACCTA
GAGCTGTATGTACACGCCAAGTGGTATGGTCAATCGTGCCTGTGTATTCAGAGCCTATGTATCTA
TAAGTTGTATGATTACTCGGAAGCCGCAGGGGCCGAGGGCTTAGG
Right flanking sequence: Indices 583550 -- 584049
AGGCTTGGGAGAAGATTCTTTAGGAGGCTTGGGCGTGGATTCCTGAGGCTTGGGTGTGGATTCCT
GAGGCTTGGGAGACGGTTCCCTGGGCTTGGGAGACGACTCCCTGGGCTTGGACGGGGCTTCTCTG
GGCTTGGGAGACGATTCCTTAGGCTTCGAAGACTCCTGAGGCTTGGGCGAAGCGGCCTTGGCCTT
GGGAGAAGGCGCTCTGGGAGGCGTAGAGCCCTTAGGAGACGATCCCTTGGGAGAGGCTCCCTTGG
GCGACGCTCCCTTGGGCGACGAGCTTCTGGGCACCGTCTCCCCGTTAGCGTCCGCCTTGCCGCCA
GCGCTCTCGCCCTTCTCGCTCTTCTCGCCGTGGTCGTGCTTTGGCCGGTAGGTGATGTGGGCAAA
CGAGCCGTCGCGGTTGCGCAGCGCCCGGTTCTTGCCGCCACGCGACCGAGGCTTGCGCGAGGCCT
CGTCGTCCTTGGGCTTTTCGGGCTTCTTGGCCTTGTCGTCGCGCG
Found at i:583599 original size:21 final size:21
Alignment explanation
Indices: 583573--583624 Score: 95
Period size: 21 Copynumber: 2.5 Consensus size: 21
583563 GATTCTTTAG
583573 GAGGCTTGGGCGTGGATTCCT
1 GAGGCTTGGGCGTGGATTCCT
*
583594 GAGGCTTGGGTGTGGATTCCT
1 GAGGCTTGGGCGTGGATTCCT
583615 GAGGCTTGGG
1 GAGGCTTGGG
583625 AGACGGTTCC
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.10, C:0.15, G:0.46, T:0.29
Consensus pattern (21 bp):
GAGGCTTGGGCGTGGATTCCT
Left flanking sequence: Indices 583073 -- 583572
TTGTATACCAATGTACGCTCTAGAGACCGAAGGCAGCTGTGAGCTTGTGGGATAACCAGTGGTAC
CAGTGGGTAAGAGGTGGTGCGAATTGGTAGAATTACTGGTGACGCAATCAACTGGTACGTAGCCA
ACTGGTGTGACGGAGCTAATTGGTGTGACGTAGCCAACTGGTGCAAACTGTAGAGCCAACTGGTT
CGAACAGAGCCTAGAATAGCCTCAACTGGTGCAAATAGCCAATTGGTTCGCGGACAATGCTTGTT
ACAAAGTCTAAATACGTCATAGGAAATAGTCAACTACTAGACAATATCTTTTATGGTACCTAGAG
CTGTATGTACACGCCAAGTGGTATGGTCAATCGTGCCTGTGTATTCAGAGCCTATGTATCTATAA
GTTGTATGATTACTCGGAAGCCGCAGGGGCCGAGGGCTTAGGGGGAGAGGTTTCTCTGGGCTTGG
GAGAGCTTTCTCTGGGCTGGGAAGGCTTGGGAGAAGATTCTTTAG
Right flanking sequence: Indices 583625 -- 584124
AGACGGTTCCCTGGGCTTGGGAGACGACTCCCTGGGCTTGGACGGGGCTTCTCTGGGCTTGGGAG
ACGATTCCTTAGGCTTCGAAGACTCCTGAGGCTTGGGCGAAGCGGCCTTGGCCTTGGGAGAAGGC
GCTCTGGGAGGCGTAGAGCCCTTAGGAGACGATCCCTTGGGAGAGGCTCCCTTGGGCGACGCTCC
CTTGGGCGACGAGCTTCTGGGCACCGTCTCCCCGTTAGCGTCCGCCTTGCCGCCAGCGCTCTCGC
CCTTCTCGCTCTTCTCGCCGTGGTCGTGCTTTGGCCGGTAGGTGATGTGGGCAAACGAGCCGTCG
CGGTTGCGCAGCGCCCGGTTCTTGCCGCCACGCGACCGAGGCTTGCGCGAGGCCTCGTCGTCCTT
GGGCTTTTCGGGCTTCTTGGCCTTGTCGTCGCGCGGCTTGTCGCTCTTGCGCTTGCGAGGCTCGC
GAGGTTCCTTGGGTTCTCTCGGCTCCTTGGGCTCTCTAGACTCCT
Found at i:583663 original size:42 final size:43
Alignment explanation
Indices: 583612--583693 Score: 107
Period size: 42 Copynumber: 1.9 Consensus size: 43
583602 GGTGTGGATT
583612 CCTGAGGCTTGGGA-GACGG-TTCCCTGGGCTTGGGAGACGACTC
1 CCTGAGGCTT-GGACG-CGGCTTCCCTGGGCTTGGGAGACGACTC
* *
583655 CCTG-GGCTTGGACGGGGCTTCTCTGGGCTTGGGAGACGA
1 CCTGAGGCTTGGACGCGGCTTCCCTGGGCTTGGGAGACGA
583694 TTCCTTAGGC
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
41 5 0.14
42 26 0.74
43 4 0.11
ACGTcount: A:0.12, C:0.24, G:0.41, T:0.22
Consensus pattern (43 bp):
CCTGAGGCTTGGACGCGGCTTCCCTGGGCTTGGGAGACGACTC
Left flanking sequence: Indices 583112 -- 583611
TGAGCTTGTGGGATAACCAGTGGTACCAGTGGGTAAGAGGTGGTGCGAATTGGTAGAATTACTGG
TGACGCAATCAACTGGTACGTAGCCAACTGGTGTGACGGAGCTAATTGGTGTGACGTAGCCAACT
GGTGCAAACTGTAGAGCCAACTGGTTCGAACAGAGCCTAGAATAGCCTCAACTGGTGCAAATAGC
CAATTGGTTCGCGGACAATGCTTGTTACAAAGTCTAAATACGTCATAGGAAATAGTCAACTACTA
GACAATATCTTTTATGGTACCTAGAGCTGTATGTACACGCCAAGTGGTATGGTCAATCGTGCCTG
TGTATTCAGAGCCTATGTATCTATAAGTTGTATGATTACTCGGAAGCCGCAGGGGCCGAGGGCTT
AGGGGGAGAGGTTTCTCTGGGCTTGGGAGAGCTTTCTCTGGGCTGGGAAGGCTTGGGAGAAGATT
CTTTAGGAGGCTTGGGCGTGGATTCCTGAGGCTTGGGTGTGGATT
Right flanking sequence: Indices 583694 -- 584193
TTCCTTAGGCTTCGAAGACTCCTGAGGCTTGGGCGAAGCGGCCTTGGCCTTGGGAGAAGGCGCTC
TGGGAGGCGTAGAGCCCTTAGGAGACGATCCCTTGGGAGAGGCTCCCTTGGGCGACGCTCCCTTG
GGCGACGAGCTTCTGGGCACCGTCTCCCCGTTAGCGTCCGCCTTGCCGCCAGCGCTCTCGCCCTT
CTCGCTCTTCTCGCCGTGGTCGTGCTTTGGCCGGTAGGTGATGTGGGCAAACGAGCCGTCGCGGT
TGCGCAGCGCCCGGTTCTTGCCGCCACGCGACCGAGGCTTGCGCGAGGCCTCGTCGTCCTTGGGC
TTTTCGGGCTTCTTGGCCTTGTCGTCGCGCGGCTTGTCGCTCTTGCGCTTGCGAGGCTCGCGAGG
TTCCTTGGGTTCTCTCGGCTCCTTGGGCTCTCTAGACTCCTTAGGTTCTCTAGCCTCCTTCGCTT
CCTTGCCTTCGTCGCCCTCCTTCTCCTTGGGCTCGCGACCCTTCC
Found at i:583731 original size:21 final size:21
Alignment explanation
Indices: 583573--583729 Score: 92
Period size: 21 Copynumber: 7.6 Consensus size: 21
583563 GATTCTTTAG
**
583573 GAGGCTTGGGCGTGGATTCCT
1 GAGGCTTGGGCGACGATTCCT
* **
583594 GAGGCTTGGGTGTGGATTCCT
1 GAGGCTTGGGCGACGATTCCT
* *
583615 GAGGCTTGGGAGACGGTTCCCT
1 GAGGCTTGGGCGACGATT-CCT
* *
583637 G-GGCTTGGGAGACGACTCCCT
1 GAGGCTTGGGCGACGA-TTCCT
* ** *
583658 G-GGCTTGGACGGGGCTTCTCT
1 GAGGCTTGGGCGACGATTC-CT
*
583679 G-GGCTTGGGAGACGATTCCT
1 GAGGCTTGGGCGACGATTCCT
* * *
583699 TAGGCTT---CGAAGACTCCT
1 GAGGCTTGGGCGACGATTCCT
583717 GAGGCTTGGGCGA
1 GAGGCTTGGGCGA
583730 AGCGGCCTTG
Statistics
Matches: 106, Mismatches: 23, Indels: 14
0.74 0.16 0.10
Matches are distributed among these distances:
18 14 0.13
20 4 0.04
21 83 0.78
22 5 0.05
ACGTcount: A:0.13, C:0.22, G:0.40, T:0.25
Consensus pattern (21 bp):
GAGGCTTGGGCGACGATTCCT
Left flanking sequence: Indices 583073 -- 583572
TTGTATACCAATGTACGCTCTAGAGACCGAAGGCAGCTGTGAGCTTGTGGGATAACCAGTGGTAC
CAGTGGGTAAGAGGTGGTGCGAATTGGTAGAATTACTGGTGACGCAATCAACTGGTACGTAGCCA
ACTGGTGTGACGGAGCTAATTGGTGTGACGTAGCCAACTGGTGCAAACTGTAGAGCCAACTGGTT
CGAACAGAGCCTAGAATAGCCTCAACTGGTGCAAATAGCCAATTGGTTCGCGGACAATGCTTGTT
ACAAAGTCTAAATACGTCATAGGAAATAGTCAACTACTAGACAATATCTTTTATGGTACCTAGAG
CTGTATGTACACGCCAAGTGGTATGGTCAATCGTGCCTGTGTATTCAGAGCCTATGTATCTATAA
GTTGTATGATTACTCGGAAGCCGCAGGGGCCGAGGGCTTAGGGGGAGAGGTTTCTCTGGGCTTGG
GAGAGCTTTCTCTGGGCTGGGAAGGCTTGGGAGAAGATTCTTTAG
Right flanking sequence: Indices 583730 -- 584229
AGCGGCCTTGGCCTTGGGAGAAGGCGCTCTGGGAGGCGTAGAGCCCTTAGGAGACGATCCCTTGG
GAGAGGCTCCCTTGGGCGACGCTCCCTTGGGCGACGAGCTTCTGGGCACCGTCTCCCCGTTAGCG
TCCGCCTTGCCGCCAGCGCTCTCGCCCTTCTCGCTCTTCTCGCCGTGGTCGTGCTTTGGCCGGTA
GGTGATGTGGGCAAACGAGCCGTCGCGGTTGCGCAGCGCCCGGTTCTTGCCGCCACGCGACCGAG
GCTTGCGCGAGGCCTCGTCGTCCTTGGGCTTTTCGGGCTTCTTGGCCTTGTCGTCGCGCGGCTTG
TCGCTCTTGCGCTTGCGAGGCTCGCGAGGTTCCTTGGGTTCTCTCGGCTCCTTGGGCTCTCTAGA
CTCCTTAGGTTCTCTAGCCTCCTTCGCTTCCTTGCCTTCGTCGCCCTCCTTCTCCTTGGGCTCGC
GACCCTTCCCTTCGCGACGAGAGTCCTTTCCACGGCCCTTGGCCT
Found at i:583797 original size:15 final size:15
Alignment explanation
Indices: 583773--583831 Score: 64
Period size: 15 Copynumber: 3.9 Consensus size: 15
583763 AGGCGTAGAG
*
583773 CCCTTAGGAGACGAT
1 CCCTTGGGAGACGAT
* *
583788 CCCTTGGGAGAGGCT
1 CCCTTGGGAGACGAT
* *
583803 CCCTTGGGCGACGCT
1 CCCTTGGGAGACGAT
*
583818 CCCTTGGGCGACGA
1 CCCTTGGGAGACGA
583832 GCTTCTGGGC
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
15 38 1.00
ACGTcount: A:0.15, C:0.32, G:0.34, T:0.19
Consensus pattern (15 bp):
CCCTTGGGAGACGAT
Left flanking sequence: Indices 583273 -- 583772
AGAGCCTAGAATAGCCTCAACTGGTGCAAATAGCCAATTGGTTCGCGGACAATGCTTGTTACAAA
GTCTAAATACGTCATAGGAAATAGTCAACTACTAGACAATATCTTTTATGGTACCTAGAGCTGTA
TGTACACGCCAAGTGGTATGGTCAATCGTGCCTGTGTATTCAGAGCCTATGTATCTATAAGTTGT
ATGATTACTCGGAAGCCGCAGGGGCCGAGGGCTTAGGGGGAGAGGTTTCTCTGGGCTTGGGAGAG
CTTTCTCTGGGCTGGGAAGGCTTGGGAGAAGATTCTTTAGGAGGCTTGGGCGTGGATTCCTGAGG
CTTGGGTGTGGATTCCTGAGGCTTGGGAGACGGTTCCCTGGGCTTGGGAGACGACTCCCTGGGCT
TGGACGGGGCTTCTCTGGGCTTGGGAGACGATTCCTTAGGCTTCGAAGACTCCTGAGGCTTGGGC
GAAGCGGCCTTGGCCTTGGGAGAAGGCGCTCTGGGAGGCGTAGAG
Right flanking sequence: Indices 583832 -- 584331
GCTTCTGGGCACCGTCTCCCCGTTAGCGTCCGCCTTGCCGCCAGCGCTCTCGCCCTTCTCGCTCT
TCTCGCCGTGGTCGTGCTTTGGCCGGTAGGTGATGTGGGCAAACGAGCCGTCGCGGTTGCGCAGC
GCCCGGTTCTTGCCGCCACGCGACCGAGGCTTGCGCGAGGCCTCGTCGTCCTTGGGCTTTTCGGG
CTTCTTGGCCTTGTCGTCGCGCGGCTTGTCGCTCTTGCGCTTGCGAGGCTCGCGAGGTTCCTTGG
GTTCTCTCGGCTCCTTGGGCTCTCTAGACTCCTTAGGTTCTCTAGCCTCCTTCGCTTCCTTGCCT
TCGTCGCCCTCCTTCTCCTTGGGCTCGCGACCCTTCCCTTCGCGACGAGAGTCCTTTCCACGGCC
CTTGGCCTTGTCACGCTTCTCGCGAGGTTCCCGAGGCTCACGAGACTCTCTAGGCTCACGCTCAC
GAGACTCACGTTCCCTGGGCTCACGCTCCTTGGGCTCACGCTCTC
Found at i:584108 original size:18 final size:18
Alignment explanation
Indices: 584085--584143 Score: 73
Period size: 18 Copynumber: 3.3 Consensus size: 18
584075 CTCGCGAGGT
* *
584085 TCCTTGGGTTCTCTCGGC
1 TCCTTGGGTTCTCTAGAC
*
584103 TCCTTGGGCTCTCTAGAC
1 TCCTTGGGTTCTCTAGAC
* *
584121 TCCTTAGGTTCTCTAGCC
1 TCCTTGGGTTCTCTAGAC
584139 TCCTT
1 TCCTT
584144 CGCTTCCTTG
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
18 35 1.00
ACGTcount: A:0.07, C:0.34, G:0.20, T:0.39
Consensus pattern (18 bp):
TCCTTGGGTTCTCTAGAC
Left flanking sequence: Indices 583585 -- 584084
TGGATTCCTGAGGCTTGGGTGTGGATTCCTGAGGCTTGGGAGACGGTTCCCTGGGCTTGGGAGAC
GACTCCCTGGGCTTGGACGGGGCTTCTCTGGGCTTGGGAGACGATTCCTTAGGCTTCGAAGACTC
CTGAGGCTTGGGCGAAGCGGCCTTGGCCTTGGGAGAAGGCGCTCTGGGAGGCGTAGAGCCCTTAG
GAGACGATCCCTTGGGAGAGGCTCCCTTGGGCGACGCTCCCTTGGGCGACGAGCTTCTGGGCACC
GTCTCCCCGTTAGCGTCCGCCTTGCCGCCAGCGCTCTCGCCCTTCTCGCTCTTCTCGCCGTGGTC
GTGCTTTGGCCGGTAGGTGATGTGGGCAAACGAGCCGTCGCGGTTGCGCAGCGCCCGGTTCTTGC
CGCCACGCGACCGAGGCTTGCGCGAGGCCTCGTCGTCCTTGGGCTTTTCGGGCTTCTTGGCCTTG
TCGTCGCGCGGCTTGTCGCTCTTGCGCTTGCGAGGCTCGCGAGGT
Right flanking sequence: Indices 584144 -- 584643
CGCTTCCTTGCCTTCGTCGCCCTCCTTCTCCTTGGGCTCGCGACCCTTCCCTTCGCGACGAGAGT
CCTTTCCACGGCCCTTGGCCTTGTCACGCTTCTCGCGAGGTTCCCGAGGCTCACGAGACTCTCTA
GGCTCACGCTCACGAGACTCACGTTCCCTGGGCTCACGCTCCTTGGGCTCACGCTCTCGCGACTC
ACGCTCACGAGACTCTCTCGGCTCCCGAGCCTCCCGAGTGTCGCGCTCACGCGGCTCCTTCTTGT
CTCTGCGGCCCTCCTTCTCCTTGGGCTCCTTCTGGTCCCGCCCGCCACGCTTGCGTGCCTCGCGC
TCGCGCGGCTTGCGCTCCTTGTCGTCCTTGTCCTTGCGCCCACCGCGCTTCTTGCTCCGCTCGCG
GCTCTGCTGGCGCATGATGTTGTTGAGCTCGGCCTTGAAGTCCGGCCGGTCCTCGCCCTCCAGGG
GCGGCACCACGGCCTCGGTCGTAGCCTCGGCCGCCACGGGGGTCG
Found at i:584296 original size:15 final size:14
Alignment explanation
Indices: 584276--584353 Score: 50
Period size: 15 Copynumber: 5.2 Consensus size: 14
584266 ACTCTCTAGG
584276 CTCACGCTCACGAGA
1 CTCACGCTCACG-GA
* * *
584291 CTCACGTTCCCTGGG
1 CTCACGCTCAC-GGA
*
584306 CTCACGCTC-CTTGGG
1 CTCACGCTCAC--GGA
*
584321 CTCACGCTCTCGCGA
1 CTCACGCTCACG-GA
584336 CTCACGCTCACGAGA
1 CTCACGCTCACG-GA
584351 CTC
1 CTC
584354 TCTCGGCTCC
Statistics
Matches: 52, Mismatches: 7, Indels: 8
0.78 0.10 0.12
Matches are distributed among these distances:
14 2 0.04
15 48 0.92
16 2 0.04
ACGTcount: A:0.15, C:0.42, G:0.22, T:0.21
Consensus pattern (14 bp):
CTCACGCTCACGGA
Left flanking sequence: Indices 583776 -- 584275
TTAGGAGACGATCCCTTGGGAGAGGCTCCCTTGGGCGACGCTCCCTTGGGCGACGAGCTTCTGGG
CACCGTCTCCCCGTTAGCGTCCGCCTTGCCGCCAGCGCTCTCGCCCTTCTCGCTCTTCTCGCCGT
GGTCGTGCTTTGGCCGGTAGGTGATGTGGGCAAACGAGCCGTCGCGGTTGCGCAGCGCCCGGTTC
TTGCCGCCACGCGACCGAGGCTTGCGCGAGGCCTCGTCGTCCTTGGGCTTTTCGGGCTTCTTGGC
CTTGTCGTCGCGCGGCTTGTCGCTCTTGCGCTTGCGAGGCTCGCGAGGTTCCTTGGGTTCTCTCG
GCTCCTTGGGCTCTCTAGACTCCTTAGGTTCTCTAGCCTCCTTCGCTTCCTTGCCTTCGTCGCCC
TCCTTCTCCTTGGGCTCGCGACCCTTCCCTTCGCGACGAGAGTCCTTTCCACGGCCCTTGGCCTT
GTCACGCTTCTCGCGAGGTTCCCGAGGCTCACGAGACTCTCTAGG
Right flanking sequence: Indices 584354 -- 584853
TCTCGGCTCCCGAGCCTCCCGAGTGTCGCGCTCACGCGGCTCCTTCTTGTCTCTGCGGCCCTCCT
TCTCCTTGGGCTCCTTCTGGTCCCGCCCGCCACGCTTGCGTGCCTCGCGCTCGCGCGGCTTGCGC
TCCTTGTCGTCCTTGTCCTTGCGCCCACCGCGCTTCTTGCTCCGCTCGCGGCTCTGCTGGCGCAT
GATGTTGTTGAGCTCGGCCTTGAAGTCCGGCCGGTCCTCGCCCTCCAGGGGCGGCACCACGGCCT
CGGTCGTAGCCTCGGCCGCCACGGGGGTCGCCTCTTGCTGCTGGTCCACTGCGGGCTCGGCCACG
GGAGCGGGTTCTTCGTCGCGCGGCTCGTCGTGGCCGTCGTGGCCGCCGTCGCTCTCCGGTGCCAC
CGGCTCCGGCTGCGGCTCCTGCGACGGCGTCTTCTTCTTGAGCACCGTGGGCGGCTTCAGTTTCT
TCGCGTTGCGCTTGGCGTCGTCGTGGCCGTTGGCCTCGGGCTTTT
Found at i:585835 original size:12 final size:12
Alignment explanation
Indices: 585818--585872 Score: 74
Period size: 12 Copynumber: 4.6 Consensus size: 12
585808 GGAGGGAGAA
585818 GGTGGTGAAGGT
1 GGTGGTGAAGGT
585830 GGTGGTGAAGGT
1 GGTGGTGAAGGT
**
585842 GGTGGCAAAGGT
1 GGTGGTGAAGGT
**
585854 GGTGGCAAAGGT
1 GGTGGTGAAGGT
585866 GGTGGTG
1 GGTGGTG
585873 GGAAAAGGTG
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 39 1.00
ACGTcount: A:0.18, C:0.04, G:0.56, T:0.22
Consensus pattern (12 bp):
GGTGGTGAAGGT
Left flanking sequence: Indices 585318 -- 585817
TCCAACTCTTGCTGGTGGTCGCTGTTGAAGGCCATGGTGGACTGGAAGTCGTGGAAGTCGGCGGC
GTCGATGTTGACGCGCTTGCCCGGGCGGTAGTAGGCGTCGAACCACTTCTGGACCTTTTGGTAGT
CGGAGTCGCCCGTCAACTCGACAAACGCCACCTTGCGGACGATGCCCAGGGTGAGCGGGTTGGAG
TGCGGGTCGAACACCACCTTTGTCTTGGCCACGGGGGTGTAGCGCAGCTTGAAGAGGTCCTCGAT
GAACGAGTTGTCTGCTGTTAGCGGCAAGTTGGTGACCTTGACGATGTAGGGCGGGCCCGAGCCGC
CGCGCGGCATCAGGTGGCTGTGGCCGTAGCCGCTGGAGAAGGCGCTGCTGCGGTAGCCGCCGGAG
CTGCCACCTATGGGCACCGAGATCAGCGCCATGTCGACCTCGGCGTCTGCCCAGGAGCCTCCGTC
GAACGCTAGGGGTTAGTACTGAGTGGGGGGGTGGTGGAGGGAGAA
Right flanking sequence: Indices 585873 -- 586372
GGAAAAGGTGGTGGAAATGAGTGGTGGTCGGAAAATGGTACGGTAGTGTGGTGGGTTGGTGATTT
CGTGGTTTGATAGTTTGGTTGTTTGATGGTTGGATAGGACGGTAGGTTGGTAGGTTGCTGGTCTT
GTGGTCTTGTGGTCTGGTAGTCTGGTGGTCTAGTGGTCCGGTGGTTTGGTCGTTTGGTGGAATGG
AGGATTGGTGGTATGGGTTCGGCCGTTTTAGGTGGTTCTGCGTGGTTCAGCCTGACTCTGAGTGG
ATCGCCATACTTCTGAGTAGTTCATCATGGTTCCTCGTGGTCCTCTGTGGTAATAGGATAGCAGA
CTGAAATCATCATTGTGGTCACTCTGGTGGTCATCAAACGTGGTTTGTGTTTCGTCCTCGGGGTA
GGCCGTCTGGGTCCTTCTGGGGTCTCCGAGCCTTGGCTGCTCACATTTATGGTCCTTGGTGTCCC
TTGTATCCATCTCTCTTCATCTCTTCATTGTTCTCTTCGTATCTG
Found at i:585857 original size:15 final size:15
Alignment explanation
Indices: 585839--585886 Score: 57
Period size: 16 Copynumber: 3.3 Consensus size: 15
585829 TGGTGGTGAA
585839 GGTGGTGGCAAA---
1 GGTGGTGGCAAAGGT
585851 GGTGGTGGCAAAGGT
1 GGTGGTGGCAAAGGT
*
585866 GGTGGTGGGAAAAGGT
1 GGTGGT-GGCAAAGGT
585882 GGTGG
1 GGTGG
585887 AAATGAGTGG
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
12 12 0.39
15 6 0.19
16 13 0.42
ACGTcount: A:0.21, C:0.04, G:0.56, T:0.19
Consensus pattern (15 bp):
GGTGGTGGCAAAGGT
Left flanking sequence: Indices 585339 -- 585838
CTGTTGAAGGCCATGGTGGACTGGAAGTCGTGGAAGTCGGCGGCGTCGATGTTGACGCGCTTGCC
CGGGCGGTAGTAGGCGTCGAACCACTTCTGGACCTTTTGGTAGTCGGAGTCGCCCGTCAACTCGA
CAAACGCCACCTTGCGGACGATGCCCAGGGTGAGCGGGTTGGAGTGCGGGTCGAACACCACCTTT
GTCTTGGCCACGGGGGTGTAGCGCAGCTTGAAGAGGTCCTCGATGAACGAGTTGTCTGCTGTTAG
CGGCAAGTTGGTGACCTTGACGATGTAGGGCGGGCCCGAGCCGCCGCGCGGCATCAGGTGGCTGT
GGCCGTAGCCGCTGGAGAAGGCGCTGCTGCGGTAGCCGCCGGAGCTGCCACCTATGGGCACCGAG
ATCAGCGCCATGTCGACCTCGGCGTCTGCCCAGGAGCCTCCGTCGAACGCTAGGGGTTAGTACTG
AGTGGGGGGGTGGTGGAGGGAGAAGGTGGTGAAGGTGGTGGTGAA
Right flanking sequence: Indices 585887 -- 586386
AAATGAGTGGTGGTCGGAAAATGGTACGGTAGTGTGGTGGGTTGGTGATTTCGTGGTTTGATAGT
TTGGTTGTTTGATGGTTGGATAGGACGGTAGGTTGGTAGGTTGCTGGTCTTGTGGTCTTGTGGTC
TGGTAGTCTGGTGGTCTAGTGGTCCGGTGGTTTGGTCGTTTGGTGGAATGGAGGATTGGTGGTAT
GGGTTCGGCCGTTTTAGGTGGTTCTGCGTGGTTCAGCCTGACTCTGAGTGGATCGCCATACTTCT
GAGTAGTTCATCATGGTTCCTCGTGGTCCTCTGTGGTAATAGGATAGCAGACTGAAATCATCATT
GTGGTCACTCTGGTGGTCATCAAACGTGGTTTGTGTTTCGTCCTCGGGGTAGGCCGTCTGGGTCC
TTCTGGGGTCTCCGAGCCTTGGCTGCTCACATTTATGGTCCTTGGTGTCCCTTGTATCCATCTCT
CTTCATCTCTTCATTGTTCTCTTCGTATCTGGTTCCTTTCCCATT
Found at i:585888 original size:12 final size:12
Alignment explanation
Indices: 585825--585899 Score: 60
Period size: 12 Copynumber: 5.8 Consensus size: 12
585815 GAAGGTGGTG
**
585825 AAGGTGGTGGTG
1 AAGGTGGTGGAA
*
585837 AAGGTGGTGGCA
1 AAGGTGGTGGAA
585849 AAGGTGGTGGCAA
1 AAGGTGGTGG-AA
*
585862 AGGTGGTGGTGGGAA
1 A--AGGTGGT-GGAA
585877 AAGGTGGTGGAA
1 AAGGTGGTGGAA
*
585889 ATGAGTGGTGG
1 AAG-GTGGTGG
585900 TCGGAAAATG
Statistics
Matches: 52, Mismatches: 6, Indels: 9
0.78 0.09 0.13
Matches are distributed among these distances:
12 26 0.50
13 15 0.29
15 9 0.17
16 2 0.04
ACGTcount: A:0.24, C:0.03, G:0.53, T:0.20
Consensus pattern (12 bp):
AAGGTGGTGGAA
Left flanking sequence: Indices 585325 -- 585824
CTTGCTGGTGGTCGCTGTTGAAGGCCATGGTGGACTGGAAGTCGTGGAAGTCGGCGGCGTCGATG
TTGACGCGCTTGCCCGGGCGGTAGTAGGCGTCGAACCACTTCTGGACCTTTTGGTAGTCGGAGTC
GCCCGTCAACTCGACAAACGCCACCTTGCGGACGATGCCCAGGGTGAGCGGGTTGGAGTGCGGGT
CGAACACCACCTTTGTCTTGGCCACGGGGGTGTAGCGCAGCTTGAAGAGGTCCTCGATGAACGAG
TTGTCTGCTGTTAGCGGCAAGTTGGTGACCTTGACGATGTAGGGCGGGCCCGAGCCGCCGCGCGG
CATCAGGTGGCTGTGGCCGTAGCCGCTGGAGAAGGCGCTGCTGCGGTAGCCGCCGGAGCTGCCAC
CTATGGGCACCGAGATCAGCGCCATGTCGACCTCGGCGTCTGCCCAGGAGCCTCCGTCGAACGCT
AGGGGTTAGTACTGAGTGGGGGGGTGGTGGAGGGAGAAGGTGGTG
Right flanking sequence: Indices 585900 -- 586399
TCGGAAAATGGTACGGTAGTGTGGTGGGTTGGTGATTTCGTGGTTTGATAGTTTGGTTGTTTGAT
GGTTGGATAGGACGGTAGGTTGGTAGGTTGCTGGTCTTGTGGTCTTGTGGTCTGGTAGTCTGGTG
GTCTAGTGGTCCGGTGGTTTGGTCGTTTGGTGGAATGGAGGATTGGTGGTATGGGTTCGGCCGTT
TTAGGTGGTTCTGCGTGGTTCAGCCTGACTCTGAGTGGATCGCCATACTTCTGAGTAGTTCATCA
TGGTTCCTCGTGGTCCTCTGTGGTAATAGGATAGCAGACTGAAATCATCATTGTGGTCACTCTGG
TGGTCATCAAACGTGGTTTGTGTTTCGTCCTCGGGGTAGGCCGTCTGGGTCCTTCTGGGGTCTCC
GAGCCTTGGCTGCTCACATTTATGGTCCTTGGTGTCCCTTGTATCCATCTCTCTTCATCTCTTCA
TTGTTCTCTTCGTATCTGGTTCCTTTCCCATTTGCCTTCTTTGCC
Found at i:586007 original size:8 final size:8
Alignment explanation
Indices: 585996--586062 Score: 62
Period size: 8 Copynumber: 8.4 Consensus size: 8
585986 GGTAGGTTGC
*
585996 TGGTCTTG
1 TGGTCTGG
*
586004 TGGTCTTG
1 TGGTCTGG
586012 TGGTCTGG
1 TGGTCTGG
*
586020 TAGTCTGG
1 TGGTCTGG
*
586028 TGGTCTAG
1 TGGTCTGG
*
586036 TGGTCCGG
1 TGGTCTGG
*
586044 TGGTTTGG
1 TGGTCTGG
* *
586052 TCGTTTGG
1 TGGTCTGG
586060 TGG
1 TGG
586063 AATGGAGGAT
Statistics
Matches: 49, Mismatches: 10, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
8 49 1.00
ACGTcount: A:0.03, C:0.12, G:0.43, T:0.42
Consensus pattern (8 bp):
TGGTCTGG
Left flanking sequence: Indices 585496 -- 585995
GGGTGAGCGGGTTGGAGTGCGGGTCGAACACCACCTTTGTCTTGGCCACGGGGGTGTAGCGCAGC
TTGAAGAGGTCCTCGATGAACGAGTTGTCTGCTGTTAGCGGCAAGTTGGTGACCTTGACGATGTA
GGGCGGGCCCGAGCCGCCGCGCGGCATCAGGTGGCTGTGGCCGTAGCCGCTGGAGAAGGCGCTGC
TGCGGTAGCCGCCGGAGCTGCCACCTATGGGCACCGAGATCAGCGCCATGTCGACCTCGGCGTCT
GCCCAGGAGCCTCCGTCGAACGCTAGGGGTTAGTACTGAGTGGGGGGGTGGTGGAGGGAGAAGGT
GGTGAAGGTGGTGGTGAAGGTGGTGGCAAAGGTGGTGGCAAAGGTGGTGGTGGGAAAAGGTGGTG
GAAATGAGTGGTGGTCGGAAAATGGTACGGTAGTGTGGTGGGTTGGTGATTTCGTGGTTTGATAG
TTTGGTTGTTTGATGGTTGGATAGGACGGTAGGTTGGTAGGTTGC
Right flanking sequence: Indices 586063 -- 586562
AATGGAGGATTGGTGGTATGGGTTCGGCCGTTTTAGGTGGTTCTGCGTGGTTCAGCCTGACTCTG
AGTGGATCGCCATACTTCTGAGTAGTTCATCATGGTTCCTCGTGGTCCTCTGTGGTAATAGGATA
GCAGACTGAAATCATCATTGTGGTCACTCTGGTGGTCATCAAACGTGGTTTGTGTTTCGTCCTCG
GGGTAGGCCGTCTGGGTCCTTCTGGGGTCTCCGAGCCTTGGCTGCTCACATTTATGGTCCTTGGT
GTCCCTTGTATCCATCTCTCTTCATCTCTTCATTGTTCTCTTCGTATCTGGTTCCTTTCCCATTT
GCCTTCTTTGCCTTCTTTCTCTTGTCTTCCTCGTGCTGGATCCGGTACTTACTGTCGTCCTTGAA
GAACTCTAACAAGCTCATTTTCTTCTTGTTGCCTGGCGGGTTAGTATGTGCCATGTGGGGTTCCG
CTGCTTGGGTGGTGGAGGCCGACTTACTCATGGTTGTTGGTGTTC
Found at i:586047 original size:32 final size:32
Alignment explanation
Indices: 585996--586062 Score: 80
Period size: 32 Copynumber: 2.1 Consensus size: 32
585986 GGTAGGTTGC
* **
585996 TGGTCTTGTGGTCTTGTGGTCTGGTAGTCTGG
1 TGGTCTAGTGGTCCGGTGGTCTGGTAGTCTGG
* * *
586028 TGGTCTAGTGGTCCGGTGGTTTGGTCGTTTGG
1 TGGTCTAGTGGTCCGGTGGTCTGGTAGTCTGG
586060 TGG
1 TGG
586063 AATGGAGGAT
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.03, C:0.12, G:0.43, T:0.42
Consensus pattern (32 bp):
TGGTCTAGTGGTCCGGTGGTCTGGTAGTCTGG
Left flanking sequence: Indices 585496 -- 585995
GGGTGAGCGGGTTGGAGTGCGGGTCGAACACCACCTTTGTCTTGGCCACGGGGGTGTAGCGCAGC
TTGAAGAGGTCCTCGATGAACGAGTTGTCTGCTGTTAGCGGCAAGTTGGTGACCTTGACGATGTA
GGGCGGGCCCGAGCCGCCGCGCGGCATCAGGTGGCTGTGGCCGTAGCCGCTGGAGAAGGCGCTGC
TGCGGTAGCCGCCGGAGCTGCCACCTATGGGCACCGAGATCAGCGCCATGTCGACCTCGGCGTCT
GCCCAGGAGCCTCCGTCGAACGCTAGGGGTTAGTACTGAGTGGGGGGGTGGTGGAGGGAGAAGGT
GGTGAAGGTGGTGGTGAAGGTGGTGGCAAAGGTGGTGGCAAAGGTGGTGGTGGGAAAAGGTGGTG
GAAATGAGTGGTGGTCGGAAAATGGTACGGTAGTGTGGTGGGTTGGTGATTTCGTGGTTTGATAG
TTTGGTTGTTTGATGGTTGGATAGGACGGTAGGTTGGTAGGTTGC
Right flanking sequence: Indices 586063 -- 586562
AATGGAGGATTGGTGGTATGGGTTCGGCCGTTTTAGGTGGTTCTGCGTGGTTCAGCCTGACTCTG
AGTGGATCGCCATACTTCTGAGTAGTTCATCATGGTTCCTCGTGGTCCTCTGTGGTAATAGGATA
GCAGACTGAAATCATCATTGTGGTCACTCTGGTGGTCATCAAACGTGGTTTGTGTTTCGTCCTCG
GGGTAGGCCGTCTGGGTCCTTCTGGGGTCTCCGAGCCTTGGCTGCTCACATTTATGGTCCTTGGT
GTCCCTTGTATCCATCTCTCTTCATCTCTTCATTGTTCTCTTCGTATCTGGTTCCTTTCCCATTT
GCCTTCTTTGCCTTCTTTCTCTTGTCTTCCTCGTGCTGGATCCGGTACTTACTGTCGTCCTTGAA
GAACTCTAACAAGCTCATTTTCTTCTTGTTGCCTGGCGGGTTAGTATGTGCCATGTGGGGTTCCG
CTGCTTGGGTGGTGGAGGCCGACTTACTCATGGTTGTTGGTGTTC
Found at i:587329 original size:13 final size:13
Alignment explanation
Indices: 587311--587405 Score: 109
Period size: 13 Copynumber: 7.3 Consensus size: 13
587301 CCCGTATACT
587311 CTCTCCCCATCTA
1 CTCTCCCCATCTA
*
587324 CTCTCCCGATCTA
1 CTCTCCCCATCTA
*
587337 CTCTTCCCATCTA
1 CTCTCCCCATCTA
* *
587350 CTTTCCCCGTCTA
1 CTCTCCCCATCTA
*
587363 CTCTCTCCATCTA
1 CTCTCCCCATCTA
* * *
587376 CTGTCTCCATCCA
1 CTCTCCCCATCTA
*
587389 CTCTCCCCATCTT
1 CTCTCCCCATCTA
587402 CTCT
1 CTCT
587406 TTCTCCTTCT
Statistics
Matches: 67, Mismatches: 15, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
13 67 1.00
ACGTcount: A:0.13, C:0.48, G:0.03, T:0.36
Consensus pattern (13 bp):
CTCTCCCCATCTA
Left flanking sequence: Indices 586811 -- 587310
CCCCACTTTCGTACATGCCACGAAATAGTAGAAGAAAACTGGCGGTGAGCGGGGCTGGAGAAACT
GGGTAAAAGTTGCATGCTCCGTGCCGTCTTTGCTCGCATGGGCAATAACTCCGCGTGTTTGTGCC
CCCCACGATGACGCCATACGGCGTTCCCCTCTTTGTGCGCGTCGGGCCCAGGTGTTGACGTCAGC
AGACCCGCCAGGGGGCTCATCAGAGGCTCATTAGGGTGGGTTGGTTGAGGGAACCGGGTGGGGAG
GTTGTGAATAGGCATTAGGCTAATAGATTTGGTGAACCCATTCGTTTCTAGTGTCTAGCTGCTTT
TAGTCTGGGTTGGATTCAGATCTGTAGCTATCACATTCTGTGCTCACGGGCTCAATTCACGACCA
GTTGCTTCACACGAGTCGATTTTCAGCGGTATATTTACGAGTAACGCTATACCACCCGTCGAGAA
AACGACCATACCTACCAACCCACATACACTCGCTCCCCGTATACT
Right flanking sequence: Indices 587406 -- 587905
TTCTCCTTCTTCTCTCTCTCCTTCTCTCTCCACACCCACTCTCATATCTCGTTATTCATTTACTC
TTTTTTACGTAGTGTCAAAGTCGTCGTAGGTGGTGCGCCAGTCCTTCCAGAACCCCTTAAAGAAC
TTCACACCCAACCCCACGTCCTTGGACCCAAGCATCGCCCGGATCAGGTGCATCGACAACTGGGG
AATCCCCAAGTCGATGGTGCGCGCCCCCGTGGCAGACGAGATGTACGGCCCAATGGTTCCTCCCG
AAGGAGTCCCGTTGCGGATCTGGAAGTACTGCAACTCGTCGCCGTTGTCGCGCGCCAACTGCTCC
AACAACGCCACCCCGGGCCCGTCGGTGGCCATGTTGCCGTTGGGGTCCAACAGCAACGTCAACCC
CTTGTTGGGCACCGGCTTGTGGCCCTCCAAGTAGTTGCCGGAGAAGTTGGGGTTGACCAAGTGGA
TCACGTCCGCGGAAAGGAAGATCAGGTTGGCGTACGCCACCCGCA
Found at i:587418 original size:15 final size:15
Alignment explanation
Indices: 587398--587435 Score: 60
Period size: 15 Copynumber: 2.6 Consensus size: 15
587388 ACTCTCCCCA
*
587398 TCTTCTCTTTCTCCT
1 TCTTCTCTCTCTCCT
587413 TCTTCTCTCTCTCCT
1 TCTTCTCTCTCTCCT
587428 TC-TCTCTC
1 TCTTCTCTC
587436 CACACCCACT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
14 6 0.27
15 16 0.73
ACGTcount: A:0.00, C:0.45, G:0.00, T:0.55
Consensus pattern (15 bp):
TCTTCTCTCTCTCCT
Left flanking sequence: Indices 586898 -- 587397
GCCGTCTTTGCTCGCATGGGCAATAACTCCGCGTGTTTGTGCCCCCCACGATGACGCCATACGGC
GTTCCCCTCTTTGTGCGCGTCGGGCCCAGGTGTTGACGTCAGCAGACCCGCCAGGGGGCTCATCA
GAGGCTCATTAGGGTGGGTTGGTTGAGGGAACCGGGTGGGGAGGTTGTGAATAGGCATTAGGCTA
ATAGATTTGGTGAACCCATTCGTTTCTAGTGTCTAGCTGCTTTTAGTCTGGGTTGGATTCAGATC
TGTAGCTATCACATTCTGTGCTCACGGGCTCAATTCACGACCAGTTGCTTCACACGAGTCGATTT
TCAGCGGTATATTTACGAGTAACGCTATACCACCCGTCGAGAAAACGACCATACCTACCAACCCA
CATACACTCGCTCCCCGTATACTCTCTCCCCATCTACTCTCCCGATCTACTCTTCCCATCTACTT
TCCCCGTCTACTCTCTCCATCTACTGTCTCCATCCACTCTCCCCA
Right flanking sequence: Indices 587436 -- 587935
CACACCCACTCTCATATCTCGTTATTCATTTACTCTTTTTTACGTAGTGTCAAAGTCGTCGTAGG
TGGTGCGCCAGTCCTTCCAGAACCCCTTAAAGAACTTCACACCCAACCCCACGTCCTTGGACCCA
AGCATCGCCCGGATCAGGTGCATCGACAACTGGGGAATCCCCAAGTCGATGGTGCGCGCCCCCGT
GGCAGACGAGATGTACGGCCCAATGGTTCCTCCCGAAGGAGTCCCGTTGCGGATCTGGAAGTACT
GCAACTCGTCGCCGTTGTCGCGCGCCAACTGCTCCAACAACGCCACCCCGGGCCCGTCGGTGGCC
ATGTTGCCGTTGGGGTCCAACAGCAACGTCAACCCCTTGTTGGGCACCGGCTTGTGGCCCTCCAA
GTAGTTGCCGGAGAAGTTGGGGTTGACCAAGTGGATCACGTCCGCGGAAAGGAAGATCAGGTTGG
CGTACGCCACCCGCAACGCCTCCTCCACGGGACACCCGCACTCGT
Found at i:592152 original size:15 final size:15
Alignment explanation
Indices: 592132--592174 Score: 77
Period size: 15 Copynumber: 2.9 Consensus size: 15
592122 TCGGGGTGTA
592132 AGGTACCAATGGGTG
1 AGGTACCAATGGGTG
592147 AGGTACCAATGGGTG
1 AGGTACCAATGGGTG
*
592162 AGGTACCCATGGG
1 AGGTACCAATGGG
592175 GTTTTGTGAT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
15 27 1.00
ACGTcount: A:0.26, C:0.16, G:0.40, T:0.19
Consensus pattern (15 bp):
AGGTACCAATGGGTG
Left flanking sequence: Indices 591632 -- 592131
CAGGCCCACCACTCGTTGGCAGAGCACTTCTGCGGCAGCACTAACGCCCAGAGCGTGAGACAGCA
TCCGCTCAAGTAGCAATACATCGGGAACGGATCGCGGTGCGGTTGGCGAACCTCGAGCACCAAGA
ACAAGAAGGAGATGGCAAACACCACCGAGGACGCGATCCTGGTGTAGATGTCTGGTTCCTCGTCT
TCGTCGGCGTTGTACAACGGCAAAACGGTTTTCTCGTCCATGATGTCGGCGGTGTATGTGTGGTA
TATGTGAGAACAGAATGACCTCGTCCGATCTCTTAACTGTTTAAGTATAGGGCGTTTTGGTGCAT
GCGCGCAGCTGCTGGCGAGAAGCCTGCATCGCGCTGAGCAAGGCAGACGCGCGGGCTGCGCAACC
AAAGCACAGGTCGCGGGGAATAGCTTAATCAGCGGCCGGTGTTGCTTGAGGGTGGGCTAACTTGT
GAAATGCTTGGTAGTGGGGCAGGAGGTACGCGTGGTCGGGGTGTA
Right flanking sequence: Indices 592175 -- 592674
GTTTTGTGATGTGTCTCATCAGGTGGTTGGGTACGCACTGGAAGTGTGGTTGCATGCAACATCGG
CGTGTAGTAGCCCATGCCTAAGAGGCATCGAACACTAGGCGAAACTCCGTGCGTTTTTGCCATAG
TGGGTGAGTACTCGTGGTTGAGGGGTCAGGAACCAATGCCGTTTGGTACCATGTCCCCTTCAGTT
GACTGGGTACCACTGGAAGAATGGTCCCATGCTTCATCGGCCTGTGATAACCTAGCCTCCGAGAA
AATCGAAGCGAAACTCGGTGCGTATTCGCCATTGTAGAGCTTAGTCGTTAAGACGCGTAGCACAC
AACTTTCCCATCGTTCATCTCCAAAACTTTCCCTATCATTCCGCTTCCCCCCCCTGGTTATCTAG
TACCATTTATTACCCTATTAACGTGTCGTTCGCCATGGCCACCTGGGCCACTGGCAGGGCCATTC
CGTCGACACACGCCCGATATAGTAACCTACACAATAAAAGCAAAA
Found at i:594004 original size:24 final size:24
Alignment explanation
Indices: 593977--594022 Score: 92
Period size: 24 Copynumber: 1.9 Consensus size: 24
593967 AACGCCAATG
593977 GGTCGAAGCCTTGTTGCCCATTCC
1 GGTCGAAGCCTTGTTGCCCATTCC
594001 GGTCGAAGCCTTGTTGCCCATT
1 GGTCGAAGCCTTGTTGCCCATT
594023 GAGGTTGCCT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.13, C:0.30, G:0.26, T:0.30
Consensus pattern (24 bp):
GGTCGAAGCCTTGTTGCCCATTCC
Left flanking sequence: Indices 593477 -- 593976
ATGTCACAAAAAGGGCAGTGCCCGCATAAAGGGCCCCGGGACTTGCTTCCGCATCAATTACGTGG
CCGTCAGGGTGGACTCCGAGAGTCAGTTAGCTCAATTGCCGGCTCTAGATGTCACAATGCACGTT
TGCGACTGTAAGCGTATTACCCCTGGACTCCGTGTTTGACCCAGCAAACCTACCCTGCAACCAGA
TTTCTTTTACGTATACGAGGTAGAAAACACAGGTAGAACCCCAGGTAGAACGACGTCATCTACAG
CACATTGAGGAGTCACGAGAGTCTCCCTTGCTTGCATGAAAGTGTCGTGGCCTGTTTAGCCAATT
AACCTTCTCTCCCCTCCTTTCCCTACCTTATCTTTTCCGGCCCCTGCGTGTCCAGACGGCTGCGC
ACCCCCGTGGGGCCGAAGTTTGCCATAATGAAAAAAGTTGCTGGACCAGGTGGTTCTTGCTGAAC
CAGGTAATAATGAAGCACGTTGCAAGCAGACATTAAACGCCAATG
Right flanking sequence: Indices 594023 -- 594522
GAGGTTGCCTTCCACGTATGTCTAGATGGAGCTGGTGCATAAACAATAGGTCTTCTGTGGAGAAG
ATGGTGGTCCGGGGTTCCCGGGTCCGTGTACCCCCCACTAGCAACCTTATTTGCACAATAGCACT
GAGATTCAGCCGTAGTTTGCTGGGGGTCTCCTATCCTGTTTGGGACGCTGCTACTTGCCCGCAAG
CCTATTTGGTCCTTGGCACAGAAGCCCTGGACGCTGCATTGCCCGAAATAGGTACGGTAATAATA
GATTGCAAGCATCTCAGCCATACTTGTCGGAGATATGGAGACAATGAGGGGAAGAGCGCGTCGAG
ATGAAATGTTGGTTAGCCGCGGGTCACAGTGCGTTTTGTGTATGGGGCTGTTCCATACTCCTTGC
AACAAACGTTTCTGCTCTTCACAACGCACTATGCAACGTCTCTACAACGCTGGTGCTCTTTGCAA
CGCCAACGTTACAACGGCTTTGTGCCTCTCGCCAAACCCGGTGGA
Found at i:594920 original size:23 final size:23
Alignment explanation
Indices: 594890--594947 Score: 82
Period size: 23 Copynumber: 2.5 Consensus size: 23
594880 ACCTCAAACA
*
594890 CTTTTTTATCTTCTCTCCCCACC
1 CTTTTTTACCTTCTCTCCCCACC
*
594913 CTTTTTTACCTTCTCTCTCCACC
1 CTTTTTTACCTTCTCTCCCCACC
594936 CTTTCTTT-CCTT
1 CTTT-TTTACCTT
594948 TCCCACGTCT
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
23 29 0.91
24 3 0.09
ACGTcount: A:0.07, C:0.41, G:0.00, T:0.52
Consensus pattern (23 bp):
CTTTTTTACCTTCTCTCCCCACC
Left flanking sequence: Indices 594390 -- 594889
TGGGGCTGTTCCATACTCCTTGCAACAAACGTTTCTGCTCTTCACAACGCACTATGCAACGTCTC
TACAACGCTGGTGCTCTTTGCAACGCCAACGTTACAACGGCTTTGTGCCTCTCGCCAAACCCGGT
GGACCCCGGATCTACGGTGTTCTATTTCGTACCCCCCGGGGGATACGCCGGTTACGATTGCACGG
GCCTCGTATTGCACAATGGAACACACACCAAACTCTAGTATAATTGAATCGCGAGGGTGGCCTGC
AGTAGAACGTTCGCCAACTGCTATCGTCGTATGTTCTCTTGGGTCATACGAGGAAGAGAACGACT
GACCATCGAATGTCCTACACTAAGTTAGTTTAGCATGGAGAGAATATCCACAGACGACCGAAGTA
GCCATCTGACACCAGACCATCGAAACCACGCTTCCAACCGACCCAATTCTATCCTTAACACAACC
TAACCAGTCATCTCAAAACAAAAATGCCCCCATCAACCTCAAACA
Right flanking sequence: Indices 594948 -- 595447
TCCCACGTCTCCCTCCCTACCGCGCTCCGCCACCCCTGCACACAACCGATCATAAATAGCATCAT
AGCCACGACGCGAGTATGGCGATGCCAATAGGGGTGTACCCCGAGGTGGCCCTCTATCTGACGCT
GTCGACGGTCCGCAAGCCCACCAAGAAACGGGTGGTGCGCCCGGCCAACACCACCACCTACATTT
TCCATGACCTTCTCGCGGTCAAGTACTTCCAGCTGGAGTTTGCCGACGAGTTCTGTGTCATGGAG
GACACCCAGGTGTGTGGCTTGGACATCTACCTCGTGGAGCAGTGGGTGGTGGACCGCAAGATAGG
CACTGTGGTGGCCGCGTACACCGGTAACGTCGAGAGCCGGGTCCGAGCCATCAAATTCACCGTGG
AGCAGAAGGAGGCCCGGTGCTACCCGGTCAAGTTCCAGGAGTACTTGAACGAGTTGGCCGTCAAC
CACGCACGCATCAAAACCATGGAGGAGCCCCCCGTGCCTTCGGGA
Found at i:597971 original size:23 final size:21
Alignment explanation
Indices: 597945--597998 Score: 63
Period size: 23 Copynumber: 2.4 Consensus size: 21
597935 TGAATGGGAT
597945 GTTGGTGTGTGGTAGGAAGTGTG
1 GTTGGTG-GTGGTAGGAAG-GTG
* *
597968 GTTGGAAGGTGGTTGGAAGGTG
1 GTTGG-TGGTGGTAGGAAGGTG
597990 GTTGGTGGT
1 GTTGGTGGT
597999 TTGTGGGTGG
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
21 3 0.11
22 8 0.30
23 15 0.56
24 1 0.04
ACGTcount: A:0.13, C:0.00, G:0.54, T:0.33
Consensus pattern (21 bp):
GTTGGTGGTGGTAGGAAGGTG
Left flanking sequence: Indices 597445 -- 597944
GCTCACGGGCAAGCCGCCCAAGGACCTTGCCGACTACCTGTTGCTGCCGCCGCCCGAGGAGAGCG
GGTGGGTGGCCACGGTGGTGATGACGGTGTACAACGCCGTTGCCTACGTGTTCCAGGCGGTGCAC
TTTGACCGGGCCAACATGAACTTGGACCGGATCCGCAAGCTGTGGATCATGTTGGATCCCAACCG
CACGTTGATCACGCGGGCGTACTCGCTCATGGGCAAGCGGCCGTCGCGCAACCTGGTGGCGCTGG
CGGAGAGCAAGGACCGGTTTGAGGATGCGGACATTATGGACGACGACCCGATGGCGGGGACGTTT
GGCGCGAGCTCGCCCGAGCCCGAGACGGACACCGTGGTGGCGGACTCGCCCAGCCAGGTGACCGA
CGAGGACGACCCGTTGTACAAGGGGGACTTTGAGGAGGACACGCTAGACGATACTAGAGACTATT
AATTGCATATATTAGAGGATGGTTGTAGGAACCGGTGAATGGGAT
Right flanking sequence: Indices 597999 -- 598498
TTGTGGGTGGTTGATGTAGATGATTAATGGATGGCTGGAATATGGATGACTCGAAGTGTGGATGG
CTGGGGTGTGGATGGCTGGGGTGTGGATGGCTGGGGTGTGGATGGCTGGAAGTGTGGGTGGAAGT
GTGGATGGCTGGGAATGTATGTTGGTGGAAGTGAATGGCTTATGGTTGATCCATGGCTGTTAAGT
TTGGCAGACAAAAAGGTGGTGTCTTACCGTCCACGCCGTCTAGTGCCTCTAACTCAAGACTATTA
TCATGGCAACAACCACAACAACCCCTACCATGCCTGACCCAGAATTGTAGCTTCGTCATACCTCA
TGGCTCTGCTAGTTCAACAAGATCCACCTCAATATCATTATGAATCACGTCCTCCGGCAGAAGCG
TCCGCTCCAACAGGAACGTAGGCGAGTTGGTAGCCGCCAGCGGCCACGACCCGTCCGAGCCAAGC
AGAATCGTCGGACTGGGGATGCTACTCATGCTCATGGGCCGGTCA
Found at i:597981 original size:11 final size:11
Alignment explanation
Indices: 597953--597994 Score: 66
Period size: 11 Copynumber: 3.7 Consensus size: 11
597943 ATGTTGGTGT
*
597953 GTGGTAGGAAG
1 GTGGTTGGAAG
597964 TGTGGTTGGAAG
1 -GTGGTTGGAAG
597976 GTGGTTGGAAG
1 GTGGTTGGAAG
597987 GTGGTTGG
1 GTGGTTGG
597995 TGGTTTGTGG
Statistics
Matches: 29, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
11 19 0.66
12 10 0.34
ACGTcount: A:0.17, C:0.00, G:0.55, T:0.29
Consensus pattern (11 bp):
GTGGTTGGAAG
Left flanking sequence: Indices 597453 -- 597952
GCAAGCCGCCCAAGGACCTTGCCGACTACCTGTTGCTGCCGCCGCCCGAGGAGAGCGGGTGGGTG
GCCACGGTGGTGATGACGGTGTACAACGCCGTTGCCTACGTGTTCCAGGCGGTGCACTTTGACCG
GGCCAACATGAACTTGGACCGGATCCGCAAGCTGTGGATCATGTTGGATCCCAACCGCACGTTGA
TCACGCGGGCGTACTCGCTCATGGGCAAGCGGCCGTCGCGCAACCTGGTGGCGCTGGCGGAGAGC
AAGGACCGGTTTGAGGATGCGGACATTATGGACGACGACCCGATGGCGGGGACGTTTGGCGCGAG
CTCGCCCGAGCCCGAGACGGACACCGTGGTGGCGGACTCGCCCAGCCAGGTGACCGACGAGGACG
ACCCGTTGTACAAGGGGGACTTTGAGGAGGACACGCTAGACGATACTAGAGACTATTAATTGCAT
ATATTAGAGGATGGTTGTAGGAACCGGTGAATGGGATGTTGGTGT
Right flanking sequence: Indices 597995 -- 598494
TGGTTTGTGGGTGGTTGATGTAGATGATTAATGGATGGCTGGAATATGGATGACTCGAAGTGTGG
ATGGCTGGGGTGTGGATGGCTGGGGTGTGGATGGCTGGGGTGTGGATGGCTGGAAGTGTGGGTGG
AAGTGTGGATGGCTGGGAATGTATGTTGGTGGAAGTGAATGGCTTATGGTTGATCCATGGCTGTT
AAGTTTGGCAGACAAAAAGGTGGTGTCTTACCGTCCACGCCGTCTAGTGCCTCTAACTCAAGACT
ATTATCATGGCAACAACCACAACAACCCCTACCATGCCTGACCCAGAATTGTAGCTTCGTCATAC
CTCATGGCTCTGCTAGTTCAACAAGATCCACCTCAATATCATTATGAATCACGTCCTCCGGCAGA
AGCGTCCGCTCCAACAGGAACGTAGGCGAGTTGGTAGCCGCCAGCGGCCACGACCCGTCCGAGCC
AAGCAGAATCGTCGGACTGGGGATGCTACTCATGCTCATGGGCCG
Found at i:598045 original size:15 final size:15
Alignment explanation
Indices: 598026--598146 Score: 104
Period size: 15 Copynumber: 8.1 Consensus size: 15
598016 AGATGATTAA
*
598026 TGGATGGCTGGAATA
1 TGGATGGCTGGAATG
* *
598041 TGGATGACTCGAAGTG
1 TGGATGGCTGGAA-TG
**
598057 TGGATGGCTGGGGTG
1 TGGATGGCTGGAATG
**
598072 TGGATGGCTGGGGTG
1 TGGATGGCTGGAATG
**
598087 TGGATGGCTGGGGTG
1 TGGATGGCTGGAATG
598102 TGGATGGCTGGAA-G
1 TGGATGGCTGGAATG
*
598116 T-G-TGGGTGGAAGTG
1 TGGATGGCTGGAA-TG
598130 TGGATGGCTGGGAATG
1 TGGATGGCT-GGAATG
598146 T
1 T
598147 ATGTTGGTGG
Statistics
Matches: 89, Mismatches: 11, Indels: 11
0.80 0.10 0.10
Matches are distributed among these distances:
12 8 0.09
13 1 0.01
14 4 0.04
15 55 0.62
16 17 0.19
17 4 0.04
ACGTcount: A:0.16, C:0.07, G:0.51, T:0.26
Consensus pattern (15 bp):
TGGATGGCTGGAATG
Left flanking sequence: Indices 597526 -- 598025
GGTGATGACGGTGTACAACGCCGTTGCCTACGTGTTCCAGGCGGTGCACTTTGACCGGGCCAACA
TGAACTTGGACCGGATCCGCAAGCTGTGGATCATGTTGGATCCCAACCGCACGTTGATCACGCGG
GCGTACTCGCTCATGGGCAAGCGGCCGTCGCGCAACCTGGTGGCGCTGGCGGAGAGCAAGGACCG
GTTTGAGGATGCGGACATTATGGACGACGACCCGATGGCGGGGACGTTTGGCGCGAGCTCGCCCG
AGCCCGAGACGGACACCGTGGTGGCGGACTCGCCCAGCCAGGTGACCGACGAGGACGACCCGTTG
TACAAGGGGGACTTTGAGGAGGACACGCTAGACGATACTAGAGACTATTAATTGCATATATTAGA
GGATGGTTGTAGGAACCGGTGAATGGGATGTTGGTGTGTGGTAGGAAGTGTGGTTGGAAGGTGGT
TGGAAGGTGGTTGGTGGTTTGTGGGTGGTTGATGTAGATGATTAA
Right flanking sequence: Indices 598147 -- 598646
ATGTTGGTGGAAGTGAATGGCTTATGGTTGATCCATGGCTGTTAAGTTTGGCAGACAAAAAGGTG
GTGTCTTACCGTCCACGCCGTCTAGTGCCTCTAACTCAAGACTATTATCATGGCAACAACCACAA
CAACCCCTACCATGCCTGACCCAGAATTGTAGCTTCGTCATACCTCATGGCTCTGCTAGTTCAAC
AAGATCCACCTCAATATCATTATGAATCACGTCCTCCGGCAGAAGCGTCCGCTCCAACAGGAACG
TAGGCGAGTTGGTAGCCGCCAGCGGCCACGACCCGTCCGAGCCAAGCAGAATCGTCGGACTGGGG
ATGCTACTCATGCTCATGGGCCGGTCAAGCGGCAACATGATCAGATCGCGCTTGGACCGCGTCCG
CACCTGGGGCGTCTGCTGGATGGGCGGAAGCTCGGGCTCCTGCTGCTCAATCAGCTTGAAAATCG
TGTTCATGTCGCGGATGAGCTGGTTCACCTCCTCCTGGTACAGCC
Found at i:598090 original size:30 final size:30
Alignment explanation
Indices: 598054--598112 Score: 118
Period size: 30 Copynumber: 2.0 Consensus size: 30
598044 ATGACTCGAA
598054 GTGTGGATGGCTGGGGTGTGGATGGCTGGG
1 GTGTGGATGGCTGGGGTGTGGATGGCTGGG
598084 GTGTGGATGGCTGGGGTGTGGATGGCTGG
1 GTGTGGATGGCTGGGGTGTGGATGGCTGG
598113 AAGTGTGGGT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.07, C:0.07, G:0.59, T:0.27
Consensus pattern (30 bp):
GTGTGGATGGCTGGGGTGTGGATGGCTGGG
Left flanking sequence: Indices 597554 -- 598053
TACGTGTTCCAGGCGGTGCACTTTGACCGGGCCAACATGAACTTGGACCGGATCCGCAAGCTGTG
GATCATGTTGGATCCCAACCGCACGTTGATCACGCGGGCGTACTCGCTCATGGGCAAGCGGCCGT
CGCGCAACCTGGTGGCGCTGGCGGAGAGCAAGGACCGGTTTGAGGATGCGGACATTATGGACGAC
GACCCGATGGCGGGGACGTTTGGCGCGAGCTCGCCCGAGCCCGAGACGGACACCGTGGTGGCGGA
CTCGCCCAGCCAGGTGACCGACGAGGACGACCCGTTGTACAAGGGGGACTTTGAGGAGGACACGC
TAGACGATACTAGAGACTATTAATTGCATATATTAGAGGATGGTTGTAGGAACCGGTGAATGGGA
TGTTGGTGTGTGGTAGGAAGTGTGGTTGGAAGGTGGTTGGAAGGTGGTTGGTGGTTTGTGGGTGG
TTGATGTAGATGATTAATGGATGGCTGGAATATGGATGACTCGAA
Right flanking sequence: Indices 598113 -- 598612
AAGTGTGGGTGGAAGTGTGGATGGCTGGGAATGTATGTTGGTGGAAGTGAATGGCTTATGGTTGA
TCCATGGCTGTTAAGTTTGGCAGACAAAAAGGTGGTGTCTTACCGTCCACGCCGTCTAGTGCCTC
TAACTCAAGACTATTATCATGGCAACAACCACAACAACCCCTACCATGCCTGACCCAGAATTGTA
GCTTCGTCATACCTCATGGCTCTGCTAGTTCAACAAGATCCACCTCAATATCATTATGAATCACG
TCCTCCGGCAGAAGCGTCCGCTCCAACAGGAACGTAGGCGAGTTGGTAGCCGCCAGCGGCCACGA
CCCGTCCGAGCCAAGCAGAATCGTCGGACTGGGGATGCTACTCATGCTCATGGGCCGGTCAAGCG
GCAACATGATCAGATCGCGCTTGGACCGCGTCCGCACCTGGGGCGTCTGCTGGATGGGCGGAAGC
TCGGGCTCCTGCTGCTCAATCAGCTTGAAAATCGTGTTCATGTCG
Found at i:603155 original size:38 final size:38
Alignment explanation
Indices: 603107--603185 Score: 142
Period size: 38 Copynumber: 2.1 Consensus size: 38
603097 GAATTGGGGT
603107 GTGGGAGTGACGCAATCAGATAAGCTCGGTTAG-TCGGG
1 GTGGGAGTGACGCAATCAGATAAGCTCGGTTAGCT-GGG
603145 GTGGGAGTGACGCAATCAGATAAGCTCGGTTAGCTGGG
1 GTGGGAGTGACGCAATCAGATAAGCTCGGTTAGCTGGG
603183 GTG
1 GTG
603186 CGGGGCACGA
Statistics
Matches: 40, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
38 39 0.98
39 1 0.03
ACGTcount: A:0.23, C:0.15, G:0.41, T:0.22
Consensus pattern (38 bp):
GTGGGAGTGACGCAATCAGATAAGCTCGGTTAGCTGGG
Left flanking sequence: Indices 602607 -- 603106
ATGAAGTGTGTTGGGGACACCTGTGCTGTGTCTGGGTTCTGGGAGGTGGTCAATGGCGTGCCGGA
GCTTCTCCCGTCCGATAATGATGCCATGCTCAGGATCAGGTACTACAGCCGCACCATGTGGATGT
TCCTTAGCAATGGGCGCCAATTTATCAAGGCCTACAACATAAGACTCGATAACACTACAGTGACG
TATACAGTGGACGGGTCGCGTATACACTTCGGGTTTGTGTCGAGCGAAGGTCGGGTGCACCAGTT
TATTGTCGAGGCAGAGAACCGGTTTCTCGCCTCCGAGGTATACGAGAGCATGATTGAGTACATGC
AGGTGCCCAATGGGTTGGACGACACTGCCAAACAGGGGCCACTGGCTGTGTGTGCTGGGGAACAC
GCCACGGTGAAGCAGATCGCCTCGGCTAAAATTATTGGATAGGGAATAAAGGTTTTGATTAGCAC
AACACGACGCAATGTCGCGGGGTAAGTGGGGTAGGGAATTGGGGT
Right flanking sequence: Indices 603186 -- 603685
CGGGGCACGACATCCAGCCTGATTTTTAATTGTGAGCTTAATCGGGCATTCCACAACCCCTGTTT
GTTTGCAGACTATGAATTGCGGGCTCTTCTTTACCTCTTATACCCACCTAGCTCAGCCTAAACTC
ACTTCCACTTTTCATTATCCATTATAATACATCTAGCACTGCTAGTTAGGCGCCGTAGCCCTTTG
CAATAAGAATCTTTTCGATGTCCAACCAAAAATCACGCACAATCGCCTTGTCACGGAACCGTTTG
TCGCCACGGTCAACCTTGATGTCGTGGACGTTCCACGTAGCGAGCGCCAGCGGGGTCGGGTCACC
CGAGTACCCCAAGTAGAACCCGGGGTAGTGCTGGAAAAGCTGCTCGGGCTTCAGGTACTTGTACT
TGGCGAACTGCCATGCCTGCCCGGTGGTGAAAATGGCAATCACCCGGTCCCAGTACTCGGGTTTG
GTGAACAAGTCGACGTTGTCCACCACCATGATCTGGTGGCCCGCG
Found at i:604833 original size:12 final size:12
Alignment explanation
Indices: 604816--604844 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
604806 TAGAACGAGA
604816 ACCACTCTTTTC
1 ACCACTCTTTTC
604828 ACCACTCTTTTC
1 ACCACTCTTTTC
604840 ACCAC
1 ACCAC
604845 ACTTATCTCC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.21, C:0.45, G:0.00, T:0.34
Consensus pattern (12 bp):
ACCACTCTTTTC
Left flanking sequence: Indices 604316 -- 604815
TCGCATGCCGCGCCGTCCTTGGAGAATGTGATGCTGCCCCCCTTGGTGGTCACGTCGCGGAGGTC
GTGAAGCACCGTCATGTTGTGGTCGCGGTGGTGCAGTGGTTGCAGTGAAAAATAGCCGCACTGGT
GAAAAGTGACGGCTGGGATGAGAGGACGTGGACGGGACGAACTGTGGGGATAAAGACCTTCGGGT
GGGAGGTGATCGAGTCAGAGTAAATGTAGTGTGGTTGGGCTAGTTTTGTGGGTTTGGCTGGGGAC
GTTTGTGGTTCGTGCCAATGGAAAAACGTTATCCAGCTGAAGAAGTATCGTGGAATTTAAACAAA
CGGCAAAAAGAAAAGTTTGGATGAGTGTAACTAAAGGAAGTAAAACCTTGGTCCAAAGAATTTAT
CTCTTGCCCTCCTCTTTGGACCTGCTACTGCGCTCTCATATTCGAAATTTGGAACACACCCATCA
CCGTAGAGCCAAAACTAACAAGAACACGTTCAGGTTAGAACGAGA
Right flanking sequence: Indices 604845 -- 605344
ACTTATCTCCATTCCCGTCTACAATCACCTCTCTTCATCATTTTTGTACACGTTCCTCACACCCG
TCGACCTACCCACCGGCACATTTGTGCGCATCTGCACATCACCTCACCATGCTTTCCCCCGAAGT
GCTCAAACAGGTAGAGCCCGTGGTGGCCTCCTTGAAGCGACAGCAGATCGAGGCAGGTAAGGCCA
CGGCGGTGGCTGTGGCCCAGCTCCTCATGAAGGTCATCCTGGCCGTGCGTTGGACCAACCCCAAC
GATCTCATCACCGTGATCCGCGAGGTCGGCGTGGTGTTGGAGAAGGCCAAGCCGCGGGACATCAT
CCCCGGAAACATTGTGCGGCGGGTGCTTGCCATCATCCGTGAGGAGATTGACGCGGACACCAACG
ACCGTGACCCTATGGTGCTGCTGATGTTTTCGCTTTTCTCGCTGGCAGCGCCGACAAAGCAGGCG
GTGACTAAGGTGCTGGGATTGCGGCTGGTGATCATCCAGGGGATC
Found at i:608437 original size:24 final size:24
Alignment explanation
Indices: 608400--608524 Score: 91
Period size: 24 Copynumber: 5.5 Consensus size: 24
608390 GGCAAAGTTG
* * *
608400 CAGTGACAGGCTTCCACTTGTACT
1 CAGTCACAGTCTTCCACTTGTAAT
* *
608424 TAGTCACAGTCTTCCCCTTGTAAT
1 CAGTCACAGTCTTCCACTTGTAAT
* *
608448 CAGTGACAG---T---CTTGTGAT
1 CAGTCACAGTCTTCCACTTGTAAT
*
608466 CAGTAACAGTCTTCCACTTGTAAT
1 CAGTCACAGTCTTCCACTTGTAAT
* * * *
608490 CAGTCACAGTCGTCCCCTTATTAT
1 CAGTCACAGTCTTCCACTTGTAAT
*
608514 CGGTCACAGTC
1 CAGTCACAGTC
608525 GCAGTCACAG
Statistics
Matches: 79, Mismatches: 16, Indels: 12
0.74 0.15 0.11
Matches are distributed among these distances:
18 15 0.19
21 2 0.03
24 62 0.78
ACGTcount: A:0.22, C:0.28, G:0.18, T:0.32
Consensus pattern (24 bp):
CAGTCACAGTCTTCCACTTGTAAT
Left flanking sequence: Indices 607900 -- 608399
ACGGCACGTGAGGAAATGGGGAGACTACAAAAGTGGCGGAAGGAGAGGGCAATTGCGTTTGTGGT
GGGTGGGGTTGAGAATTGGAAGTTGAGTGGGTCTGTTGATGCTGTGATTGCCACGTGGGGTGGGT
GGAGTGGCTGCAAATCTCAACTACGTGGGAAACATTCAATTACTACAAAAAGGCTACTGGCAAAA
GAACAGACTGCTCTGGCTCTATGTAGGACACGGGATAGGGTACGTGGTAGTTACTGTCACGGGGC
ACTTCCATCCCTTGATAGTTTTGGAGACCGTTCTTGTACAGGTGGGACAGGTATTCGGCAAGGTG
CTGGTGACCGTGCCCTTGGGACAGCCGCAGGTACCGGGAACACGGACAGTTTTAGTGTGCTTACA
AGTGAACTTCGACGGGCACGGGATAGTTGACGTTCGTGTGATGGGACAGGGACATGGGTGTGGCA
CGGTAACCGTAGGAAGCGCCGGACACGTCCTACAGGGCAAAGTTG
Right flanking sequence: Indices 608525 -- 609024
GCAGTCACAGTCTTCCACTTGTAATCTGTCACAGTCGTCCCCTTGTTATCAGTCACAGTCGCCGT
CACAGTCTTCCACTTGTAATCAGTTACAGTCGTCCCCTTGTTATCAGTCACAGTCGCAGTCACAG
TCGTCCCCTTGTAATCTGTCACAGTCGCGGTCTTAGTCTTCCACTTGTAATCTGTCACAGTCGCA
GTCACAGTCGTCCCCTTGTTATCAGTCACAGTAGCAGTCACAGTCTTCCACTTGTAATCTGTCAC
AGTCGCAGTCACAGTCTTCCACTTGTAATCAGTCACAGTCGTCCCCTTGTTATCAGTCACAGTCG
CAGTCACAGTCTTCCATTTGTAATCTGTCACAGTCGCAGTCTTAGTCTTCCACTTGTATTCAGTC
ACCGCTGTGGGGCAGATTGTGGGTTCGGTCACGGTGACACGACACTTTGTGATTATGACAGTGTT
TGGGCAGGGCGTGTAGGCCGGTCCGGTAGATGTGGGAGACACACA
Found at i:608461 original size:18 final size:18
Alignment explanation
Indices: 608440--608478 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
608430 CAGTCTTCCC
*
608440 CTTGTAATCAGTGACAGT
1 CTTGTAATCAGTAACAGT
*
608458 CTTGTGATCAGTAACAGT
1 CTTGTAATCAGTAACAGT
608476 CTT
1 CTT
608479 CCACTTGTAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.26, C:0.18, G:0.21, T:0.36
Consensus pattern (18 bp):
CTTGTAATCAGTAACAGT
Left flanking sequence: Indices 607940 -- 608439
AGGAGAGGGCAATTGCGTTTGTGGTGGGTGGGGTTGAGAATTGGAAGTTGAGTGGGTCTGTTGAT
GCTGTGATTGCCACGTGGGGTGGGTGGAGTGGCTGCAAATCTCAACTACGTGGGAAACATTCAAT
TACTACAAAAAGGCTACTGGCAAAAGAACAGACTGCTCTGGCTCTATGTAGGACACGGGATAGGG
TACGTGGTAGTTACTGTCACGGGGCACTTCCATCCCTTGATAGTTTTGGAGACCGTTCTTGTACA
GGTGGGACAGGTATTCGGCAAGGTGCTGGTGACCGTGCCCTTGGGACAGCCGCAGGTACCGGGAA
CACGGACAGTTTTAGTGTGCTTACAAGTGAACTTCGACGGGCACGGGATAGTTGACGTTCGTGTG
ATGGGACAGGGACATGGGTGTGGCACGGTAACCGTAGGAAGCGCCGGACACGTCCTACAGGGCAA
AGTTGCAGTGACAGGCTTCCACTTGTACTTAGTCACAGTCTTCCC
Right flanking sequence: Indices 608479 -- 608978
CCACTTGTAATCAGTCACAGTCGTCCCCTTATTATCGGTCACAGTCGCAGTCACAGTCTTCCACT
TGTAATCTGTCACAGTCGTCCCCTTGTTATCAGTCACAGTCGCCGTCACAGTCTTCCACTTGTAA
TCAGTTACAGTCGTCCCCTTGTTATCAGTCACAGTCGCAGTCACAGTCGTCCCCTTGTAATCTGT
CACAGTCGCGGTCTTAGTCTTCCACTTGTAATCTGTCACAGTCGCAGTCACAGTCGTCCCCTTGT
TATCAGTCACAGTAGCAGTCACAGTCTTCCACTTGTAATCTGTCACAGTCGCAGTCACAGTCTTC
CACTTGTAATCAGTCACAGTCGTCCCCTTGTTATCAGTCACAGTCGCAGTCACAGTCTTCCATTT
GTAATCTGTCACAGTCGCAGTCTTAGTCTTCCACTTGTATTCAGTCACCGCTGTGGGGCAGATTG
TGGGTTCGGTCACGGTGACACGACACTTTGTGATTATGACAGTGT
Found at i:608544 original size:60 final size:60
Alignment explanation
Indices: 608399--608885 Score: 479
Period size: 60 Copynumber: 7.6 Consensus size: 60
608389 GGGCAAAGTT
* * * * * * *
608399 GCAGTGACAGGCTTCCACTTGTACTTAGTCACAGTCTTCCCCTTGTAATCAGTGACAGTC
1 GCAGTCACAGTCTTCCACTTGTAATCAGTCACAGTCGTCCCCTTGTTATCAGTCACAGTC
* * *
608459 TTGTGATCAGTAACAGTCTTCCACTTGTAATCAGTCACAGTCGTCCCCTTATTATCGGTCACAGT
1 ----G--CAGTCACAGTCTTCCACTTGTAATCAGTCACAGTCGTCCCCTTGTTATCAGTCACAGT
608524 C
60 C
*
608525 GCAGTCACAGTCTTCCACTTGTAATCTGTCACAGTCGTCCCCTTGTTATCAGTCACAGTC
1 GCAGTCACAGTCTTCCACTTGTAATCAGTCACAGTCGTCCCCTTGTTATCAGTCACAGTC
* *
608585 GCCGTCACAGTCTTCCACTTGTAATCAGTTACAGTCGTCCCCTTGTTATCAGTCACAGTC
1 GCAGTCACAGTCTTCCACTTGTAATCAGTCACAGTCGTCCCCTTGTTATCAGTCACAGTC
* * * * *
608645 GCAGTCACAGTCGTCCCCTTGTAATCTGTCACAGTCGCGGTCTTAGTCTTCCACTTGTAATCTGT
1 GCAGTCACAGTCTTCCACTTGTAATCAGTCACA------GTC---GTC--CC-CTTGTTATCAGT
608710 CACAGTC
54 CACAGTC
* * * * *
608717 GCAGTCACAGTCGTCCCCTTGTTATCAGTCACAGTAGCAGTCACAGTCTTCCACTTGTAATCTGT
1 GCAGTCACAGTCTTCCACTTGTAATCAGT--C---A-CAGT--C-GTC--CC-CTTGTTATCAGT
608782 CACAGTC
54 CACAGTC
608789 GCAGTCACAGTCTTCCACTTGTAATCAGTCACAGTCGTCCCCTTGTTATCAGTCACAGTC
1 GCAGTCACAGTCTTCCACTTGTAATCAGTCACAGTCGTCCCCTTGTTATCAGTCACAGTC
* *
608849 GCAGTCACAGTCTTCCATTTGTAATCTGTCACAGTCG
1 GCAGTCACAGTCTTCCACTTGTAATCAGTCACAGTCG
608886 CAGTCTTAGT
Statistics
Matches: 369, Mismatches: 32, Indels: 48
0.82 0.07 0.11
Matches are distributed among these distances:
60 192 0.52
61 2 0.01
62 1 0.00
63 3 0.01
64 2 0.01
66 57 0.15
67 1 0.00
69 3 0.01
70 1 0.00
71 2 0.01
72 100 0.27
74 2 0.01
77 1 0.00
78 2 0.01
ACGTcount: A:0.21, C:0.30, G:0.18, T:0.31
Consensus pattern (60 bp):
GCAGTCACAGTCTTCCACTTGTAATCAGTCACAGTCGTCCCCTTGTTATCAGTCACAGTC
Left flanking sequence: Indices 607899 -- 608398
GACGGCACGTGAGGAAATGGGGAGACTACAAAAGTGGCGGAAGGAGAGGGCAATTGCGTTTGTGG
TGGGTGGGGTTGAGAATTGGAAGTTGAGTGGGTCTGTTGATGCTGTGATTGCCACGTGGGGTGGG
TGGAGTGGCTGCAAATCTCAACTACGTGGGAAACATTCAATTACTACAAAAAGGCTACTGGCAAA
AGAACAGACTGCTCTGGCTCTATGTAGGACACGGGATAGGGTACGTGGTAGTTACTGTCACGGGG
CACTTCCATCCCTTGATAGTTTTGGAGACCGTTCTTGTACAGGTGGGACAGGTATTCGGCAAGGT
GCTGGTGACCGTGCCCTTGGGACAGCCGCAGGTACCGGGAACACGGACAGTTTTAGTGTGCTTAC
AAGTGAACTTCGACGGGCACGGGATAGTTGACGTTCGTGTGATGGGACAGGGACATGGGTGTGGC
ACGGTAACCGTAGGAAGCGCCGGACACGTCCTACAGGGCAAAGTT
Right flanking sequence: Indices 608886 -- 609385
CAGTCTTAGTCTTCCACTTGTATTCAGTCACCGCTGTGGGGCAGATTGTGGGTTCGGTCACGGTG
ACACGACACTTTGTGATTATGACAGTGTTTGGGCAGGGCGTGTAGGCCGGTCCGGTAGATGTGGG
AGACACACACAGAGTCCACTGCTTTGGGTTGCCGGTGCAAATGGGCAACAGCAGGGTCGGCCCGG
TAGACGTAGGGGAAACGCACAGGGTCCACTGTTTTGGGTTGCCGGTGCAAATGGGCAACAGCAGT
GTGGGACCAGTAGATGTGGGAGAGATACACAGCGTCCACTGCTTCGGGTTGCCCGTACAGATTGG
CAACAGCAGAGTGGGTCCGGTCGAAGTTGGAGACACGCACAGAGTCCACTGCTTGGGGTTACCGG
TACAAATAGGCAACAGCGATGTAGCATTGGTGGCTGCCGAGCCCACAGCCAAGGCCAGGATAATA
AGGAACACAGTAAACTTAGTCATGTCACTGGGCTACCCGTCCCCT
Found at i:608556 original size:36 final size:36
Alignment explanation
Indices: 608490--608561 Score: 99
Period size: 36 Copynumber: 2.0 Consensus size: 36
608480 CACTTGTAAT
* *
608490 CAGTCACAGTCGTCCCCTTATTATCGGTCACAGTCG
1 CAGTCACAGTCGTCCACTTATAATCGGTCACAGTCG
* * *
608526 CAGTCACAGTCTTCCACTTGTAATCTGTCACAGTCG
1 CAGTCACAGTCGTCCACTTATAATCGGTCACAGTCG
608562 TCCCCTTGTT
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
36 31 1.00
ACGTcount: A:0.21, C:0.32, G:0.18, T:0.29
Consensus pattern (36 bp):
CAGTCACAGTCGTCCACTTATAATCGGTCACAGTCG
Left flanking sequence: Indices 607990 -- 608489
AGTGGGTCTGTTGATGCTGTGATTGCCACGTGGGGTGGGTGGAGTGGCTGCAAATCTCAACTACG
TGGGAAACATTCAATTACTACAAAAAGGCTACTGGCAAAAGAACAGACTGCTCTGGCTCTATGTA
GGACACGGGATAGGGTACGTGGTAGTTACTGTCACGGGGCACTTCCATCCCTTGATAGTTTTGGA
GACCGTTCTTGTACAGGTGGGACAGGTATTCGGCAAGGTGCTGGTGACCGTGCCCTTGGGACAGC
CGCAGGTACCGGGAACACGGACAGTTTTAGTGTGCTTACAAGTGAACTTCGACGGGCACGGGATA
GTTGACGTTCGTGTGATGGGACAGGGACATGGGTGTGGCACGGTAACCGTAGGAAGCGCCGGACA
CGTCCTACAGGGCAAAGTTGCAGTGACAGGCTTCCACTTGTACTTAGTCACAGTCTTCCCCTTGT
AATCAGTGACAGTCTTGTGATCAGTAACAGTCTTCCACTTGTAAT
Right flanking sequence: Indices 608562 -- 609061
TCCCCTTGTTATCAGTCACAGTCGCCGTCACAGTCTTCCACTTGTAATCAGTTACAGTCGTCCCC
TTGTTATCAGTCACAGTCGCAGTCACAGTCGTCCCCTTGTAATCTGTCACAGTCGCGGTCTTAGT
CTTCCACTTGTAATCTGTCACAGTCGCAGTCACAGTCGTCCCCTTGTTATCAGTCACAGTAGCAG
TCACAGTCTTCCACTTGTAATCTGTCACAGTCGCAGTCACAGTCTTCCACTTGTAATCAGTCACA
GTCGTCCCCTTGTTATCAGTCACAGTCGCAGTCACAGTCTTCCATTTGTAATCTGTCACAGTCGC
AGTCTTAGTCTTCCACTTGTATTCAGTCACCGCTGTGGGGCAGATTGTGGGTTCGGTCACGGTGA
CACGACACTTTGTGATTATGACAGTGTTTGGGCAGGGCGTGTAGGCCGGTCCGGTAGATGTGGGA
GACACACACAGAGTCCACTGCTTTGGGTTGCCGGTGCAAATGGGC
Found at i:608560 original size:24 final size:24
Alignment explanation
Indices: 608526--608585 Score: 84
Period size: 24 Copynumber: 2.5 Consensus size: 24
608516 GTCACAGTCG
*
608526 CAGTCACAGTCTTCCACTTGTAAT
1 CAGTCACAGTCGTCCACTTGTAAT
* * *
608550 CTGTCACAGTCGTCCCCTTGTTAT
1 CAGTCACAGTCGTCCACTTGTAAT
608574 CAGTCACAGTCG
1 CAGTCACAGTCG
608586 CCGTCACAGT
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 31 1.00
ACGTcount: A:0.20, C:0.32, G:0.17, T:0.32
Consensus pattern (24 bp):
CAGTCACAGTCGTCCACTTGTAAT
Left flanking sequence: Indices 608026 -- 608525
GGGTGGAGTGGCTGCAAATCTCAACTACGTGGGAAACATTCAATTACTACAAAAAGGCTACTGGC
AAAAGAACAGACTGCTCTGGCTCTATGTAGGACACGGGATAGGGTACGTGGTAGTTACTGTCACG
GGGCACTTCCATCCCTTGATAGTTTTGGAGACCGTTCTTGTACAGGTGGGACAGGTATTCGGCAA
GGTGCTGGTGACCGTGCCCTTGGGACAGCCGCAGGTACCGGGAACACGGACAGTTTTAGTGTGCT
TACAAGTGAACTTCGACGGGCACGGGATAGTTGACGTTCGTGTGATGGGACAGGGACATGGGTGT
GGCACGGTAACCGTAGGAAGCGCCGGACACGTCCTACAGGGCAAAGTTGCAGTGACAGGCTTCCA
CTTGTACTTAGTCACAGTCTTCCCCTTGTAATCAGTGACAGTCTTGTGATCAGTAACAGTCTTCC
ACTTGTAATCAGTCACAGTCGTCCCCTTATTATCGGTCACAGTCG
Right flanking sequence: Indices 608586 -- 609085
CCGTCACAGTCTTCCACTTGTAATCAGTTACAGTCGTCCCCTTGTTATCAGTCACAGTCGCAGTC
ACAGTCGTCCCCTTGTAATCTGTCACAGTCGCGGTCTTAGTCTTCCACTTGTAATCTGTCACAGT
CGCAGTCACAGTCGTCCCCTTGTTATCAGTCACAGTAGCAGTCACAGTCTTCCACTTGTAATCTG
TCACAGTCGCAGTCACAGTCTTCCACTTGTAATCAGTCACAGTCGTCCCCTTGTTATCAGTCACA
GTCGCAGTCACAGTCTTCCATTTGTAATCTGTCACAGTCGCAGTCTTAGTCTTCCACTTGTATTC
AGTCACCGCTGTGGGGCAGATTGTGGGTTCGGTCACGGTGACACGACACTTTGTGATTATGACAG
TGTTTGGGCAGGGCGTGTAGGCCGGTCCGGTAGATGTGGGAGACACACACAGAGTCCACTGCTTT
GGGTTGCCGGTGCAAATGGGCAACAGCAGGGTCGGCCCGGTAGAC
Found at i:608592 original size:36 final size:36
Alignment explanation
Indices: 608552--608825 Score: 198
Period size: 36 Copynumber: 7.9 Consensus size: 36
608542 CTTGTAATCT
* *
608552 GTCACAGTCGTCCCCTTGTTATCAGTCACAGTCGCC
1 GTCACAGTCGTCCACTTGTAATCAGTCACAGTCGCC
* *
608588 GTCACAGTCTTCCACTTGTAATCAGTTACAGTCGTCC
1 GTCACAGTCGTCCACTTGTAATCAGTCACAGTCG-CC
* * * * * * *
608625 --C-C--TTGT-TA-TCAGTCA-CAGTCGCAGTCACA
1 GTCACAGTCGTCCACT-TGTAATCAGTCACAGTCGCC
* *
608654 GTC---GTC--CC-CTTGTAATCTGTCACAGTCGCG
1 GTCACAGTCGTCCACTTGTAATCAGTCACAGTCGCC
** * * *
608684 GTCTTAGTCTTCCACTTGTAATCTGTCACAGTCGCA
1 GTCACAGTCGTCCACTTGTAATCAGTCACAGTCGCC
* * * *
608720 GTCACAGTCGTCCCCTTGTTATCAGTCACAGTAGCA
1 GTCACAGTCGTCCACTTGTAATCAGTCACAGTCGCC
* * *
608756 GTCACAGTCTTCCACTTGTAATCTGTCACAGTCGCA
1 GTCACAGTCGTCCACTTGTAATCAGTCACAGTCGCC
*
608792 GTCACAGTCTTCCACTTGTAATCAGTCACAGTCG
1 GTCACAGTCGTCCACTTGTAATCAGTCACAGTCG
608826 TCCCCTTGTT
Statistics
Matches: 189, Mismatches: 35, Indels: 28
0.75 0.14 0.11
Matches are distributed among these distances:
29 4 0.02
30 24 0.13
31 6 0.03
32 2 0.01
33 3 0.02
34 1 0.01
35 3 0.02
36 144 0.76
37 2 0.01
ACGTcount: A:0.20, C:0.31, G:0.18, T:0.30
Consensus pattern (36 bp):
GTCACAGTCGTCCACTTGTAATCAGTCACAGTCGCC
Left flanking sequence: Indices 608052 -- 608551
ACGTGGGAAACATTCAATTACTACAAAAAGGCTACTGGCAAAAGAACAGACTGCTCTGGCTCTAT
GTAGGACACGGGATAGGGTACGTGGTAGTTACTGTCACGGGGCACTTCCATCCCTTGATAGTTTT
GGAGACCGTTCTTGTACAGGTGGGACAGGTATTCGGCAAGGTGCTGGTGACCGTGCCCTTGGGAC
AGCCGCAGGTACCGGGAACACGGACAGTTTTAGTGTGCTTACAAGTGAACTTCGACGGGCACGGG
ATAGTTGACGTTCGTGTGATGGGACAGGGACATGGGTGTGGCACGGTAACCGTAGGAAGCGCCGG
ACACGTCCTACAGGGCAAAGTTGCAGTGACAGGCTTCCACTTGTACTTAGTCACAGTCTTCCCCT
TGTAATCAGTGACAGTCTTGTGATCAGTAACAGTCTTCCACTTGTAATCAGTCACAGTCGTCCCC
TTATTATCGGTCACAGTCGCAGTCACAGTCTTCCACTTGTAATCT
Right flanking sequence: Indices 608826 -- 609325
TCCCCTTGTTATCAGTCACAGTCGCAGTCACAGTCTTCCATTTGTAATCTGTCACAGTCGCAGTC
TTAGTCTTCCACTTGTATTCAGTCACCGCTGTGGGGCAGATTGTGGGTTCGGTCACGGTGACACG
ACACTTTGTGATTATGACAGTGTTTGGGCAGGGCGTGTAGGCCGGTCCGGTAGATGTGGGAGACA
CACACAGAGTCCACTGCTTTGGGTTGCCGGTGCAAATGGGCAACAGCAGGGTCGGCCCGGTAGAC
GTAGGGGAAACGCACAGGGTCCACTGTTTTGGGTTGCCGGTGCAAATGGGCAACAGCAGTGTGGG
ACCAGTAGATGTGGGAGAGATACACAGCGTCCACTGCTTCGGGTTGCCCGTACAGATTGGCAACA
GCAGAGTGGGTCCGGTCGAAGTTGGAGACACGCACAGAGTCCACTGCTTGGGGTTACCGGTACAA
ATAGGCAACAGCGATGTAGCATTGGTGGCTGCCGAGCCCACAGCC
Found at i:608629 original size:24 final size:24
Alignment explanation
Indices: 608588--608645 Score: 80
Period size: 24 Copynumber: 2.4 Consensus size: 24
608578 CACAGTCGCC
*
608588 GTCACAGTCTTCCACTTGTAATCA
1 GTCACAGTCGTCCACTTGTAATCA
* * *
608612 GTTACAGTCGTCCCCTTGTTATCA
1 GTCACAGTCGTCCACTTGTAATCA
608636 GTCACAGTCG
1 GTCACAGTCG
608646 CAGTCACAGT
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 29 1.00
ACGTcount: A:0.21, C:0.29, G:0.17, T:0.33
Consensus pattern (24 bp):
GTCACAGTCGTCCACTTGTAATCA
Left flanking sequence: Indices 608088 -- 608587
GGCAAAAGAACAGACTGCTCTGGCTCTATGTAGGACACGGGATAGGGTACGTGGTAGTTACTGTC
ACGGGGCACTTCCATCCCTTGATAGTTTTGGAGACCGTTCTTGTACAGGTGGGACAGGTATTCGG
CAAGGTGCTGGTGACCGTGCCCTTGGGACAGCCGCAGGTACCGGGAACACGGACAGTTTTAGTGT
GCTTACAAGTGAACTTCGACGGGCACGGGATAGTTGACGTTCGTGTGATGGGACAGGGACATGGG
TGTGGCACGGTAACCGTAGGAAGCGCCGGACACGTCCTACAGGGCAAAGTTGCAGTGACAGGCTT
CCACTTGTACTTAGTCACAGTCTTCCCCTTGTAATCAGTGACAGTCTTGTGATCAGTAACAGTCT
TCCACTTGTAATCAGTCACAGTCGTCCCCTTATTATCGGTCACAGTCGCAGTCACAGTCTTCCAC
TTGTAATCTGTCACAGTCGTCCCCTTGTTATCAGTCACAGTCGCC
Right flanking sequence: Indices 608646 -- 609145
CAGTCACAGTCGTCCCCTTGTAATCTGTCACAGTCGCGGTCTTAGTCTTCCACTTGTAATCTGTC
ACAGTCGCAGTCACAGTCGTCCCCTTGTTATCAGTCACAGTAGCAGTCACAGTCTTCCACTTGTA
ATCTGTCACAGTCGCAGTCACAGTCTTCCACTTGTAATCAGTCACAGTCGTCCCCTTGTTATCAG
TCACAGTCGCAGTCACAGTCTTCCATTTGTAATCTGTCACAGTCGCAGTCTTAGTCTTCCACTTG
TATTCAGTCACCGCTGTGGGGCAGATTGTGGGTTCGGTCACGGTGACACGACACTTTGTGATTAT
GACAGTGTTTGGGCAGGGCGTGTAGGCCGGTCCGGTAGATGTGGGAGACACACACAGAGTCCACT
GCTTTGGGTTGCCGGTGCAAATGGGCAACAGCAGGGTCGGCCCGGTAGACGTAGGGGAAACGCAC
AGGGTCCACTGTTTTGGGTTGCCGGTGCAAATGGGCAACAGCAGT
Found at i:608652 original size:96 final size:96
Alignment explanation
Indices: 608552--608913 Score: 472
Period size: 96 Copynumber: 3.6 Consensus size: 96
608542 CTTGTAATCT
* * * *
608552 GTCACAGTCGTCCCCTTGTTATCAGTCACAGTCGCCGTCACAGTCTTCCACTTGTAATCAGTTAC
1 GTCACAGTCGTCCACTTGTAATCTGTCACAGTCGCAGTCACAGTCTTCCACTTGTAATCAGTTAC
608617 AGTCGTCCCCTTGTTATCAGTCACAGTCGCA
66 AGTCGTCCCCTTGTTATCAGTCACAGTCGCA
* * **
608648 GTCACAGTCGTCCCCTTGTAATCTGTCACAGTCGCGGTCTTAGTCTTCCACTTGTAATCTGTCAC
1 GTCACAGTCGTCCACTTGTAATCTGTCACAGTCGCAGTCACAGTCTTCCACTTGTAA----T--C
*
608713 AGTCGCAGTCACAGTCGTCCCCTTGTTATCAGTCACAGTAGCA
60 AGT-----T-ACAGTCGTCCCCTTGTTATCAGTCACAGTCGCA
* *
608756 GTCACAGTCTTCCACTTGTAATCTGTCACAGTCGCAGTCACAGTCTTCCACTTGTAATCAGTCAC
1 GTCACAGTCGTCCACTTGTAATCTGTCACAGTCGCAGTCACAGTCTTCCACTTGTAATCAGTTAC
608821 AGTCGTCCCCTTGTTATCAGTCACAGTCGCA
66 AGTCGTCCCCTTGTTATCAGTCACAGTCGCA
* * ** *
608852 GTCACAGTCTTCCATTTGTAATCTGTCACAGTCGCAGTCTTAGTCTTCCACTTGTATTCAGT
1 GTCACAGTCGTCCACTTGTAATCTGTCACAGTCGCAGTCACAGTCTTCCACTTGTAATCAGT
608914 CACCGCTGTG
Statistics
Matches: 237, Mismatches: 17, Indels: 24
0.85 0.06 0.09
Matches are distributed among these distances:
96 142 0.60
100 1 0.00
102 8 0.03
104 1 0.00
107 1 0.00
108 84 0.35
ACGTcount: A:0.20, C:0.30, G:0.18, T:0.32
Consensus pattern (96 bp):
GTCACAGTCGTCCACTTGTAATCTGTCACAGTCGCAGTCACAGTCTTCCACTTGTAATCAGTTAC
AGTCGTCCCCTTGTTATCAGTCACAGTCGCA
Left flanking sequence: Indices 608052 -- 608551
ACGTGGGAAACATTCAATTACTACAAAAAGGCTACTGGCAAAAGAACAGACTGCTCTGGCTCTAT
GTAGGACACGGGATAGGGTACGTGGTAGTTACTGTCACGGGGCACTTCCATCCCTTGATAGTTTT
GGAGACCGTTCTTGTACAGGTGGGACAGGTATTCGGCAAGGTGCTGGTGACCGTGCCCTTGGGAC
AGCCGCAGGTACCGGGAACACGGACAGTTTTAGTGTGCTTACAAGTGAACTTCGACGGGCACGGG
ATAGTTGACGTTCGTGTGATGGGACAGGGACATGGGTGTGGCACGGTAACCGTAGGAAGCGCCGG
ACACGTCCTACAGGGCAAAGTTGCAGTGACAGGCTTCCACTTGTACTTAGTCACAGTCTTCCCCT
TGTAATCAGTGACAGTCTTGTGATCAGTAACAGTCTTCCACTTGTAATCAGTCACAGTCGTCCCC
TTATTATCGGTCACAGTCGCAGTCACAGTCTTCCACTTGTAATCT
Right flanking sequence: Indices 608914 -- 609413
CACCGCTGTGGGGCAGATTGTGGGTTCGGTCACGGTGACACGACACTTTGTGATTATGACAGTGT
TTGGGCAGGGCGTGTAGGCCGGTCCGGTAGATGTGGGAGACACACACAGAGTCCACTGCTTTGGG
TTGCCGGTGCAAATGGGCAACAGCAGGGTCGGCCCGGTAGACGTAGGGGAAACGCACAGGGTCCA
CTGTTTTGGGTTGCCGGTGCAAATGGGCAACAGCAGTGTGGGACCAGTAGATGTGGGAGAGATAC
ACAGCGTCCACTGCTTCGGGTTGCCCGTACAGATTGGCAACAGCAGAGTGGGTCCGGTCGAAGTT
GGAGACACGCACAGAGTCCACTGCTTGGGGTTACCGGTACAAATAGGCAACAGCGATGTAGCATT
GGTGGCTGCCGAGCCCACAGCCAAGGCCAGGATAATAAGGAACACAGTAAACTTAGTCATGTCAC
TGGGCTACCCGTCCCCTCCCTCTAATTTATATTATTATCCCATCC
Found at i:608702 original size:72 final size:72
Alignment explanation
Indices: 608617--608916 Score: 338
Period size: 72 Copynumber: 4.3 Consensus size: 72
608607 AATCAGTTAC
* * * *
608617 AGTCGTCCCCTTGTTATCAGTCACAGTCGCAGTCACAGTCGTCCCCTTGTAATCTGTCACAGTCG
1 AGTCTTCCACTTGTTATCAGTCACAGTCGCAGTCACAGTCGTCCACTTGTAATCAGTCACAGTCG
*
608682 CGGTCTT
66 CAGTCTT
* * * * *
608689 AGTCTTCCACTTGTAATCTGTCACAGTCGCAGTCACAGTCGTCCCCTTGTTATCAGTCACAGTAG
1 AGTCTTCCACTTGTTATCAGTCACAGTCGCAGTCACAGTCGTCCACTTGTAATCAGTCACAGTCG
**
608754 CAGTCAC
66 CAGTCTT
* * *
608761 AGTCTTCCACTTGTAATCTGTCACAGTCGCAGTCACAGTCTTCCACTTGTAATCAGT--CA----
1 AGTCTTCCACTTGTTATCAGTCACAGTCGCAGTCACAGTCGTCCACTTGTAATCAGTCACAGTCG
608820 CAGTC--
66 CAGTCTT
* * *
608825 -GTC--CC-CTTGTTATCAGTCACAGTCGCAGTCACAGTCTTCCATTTGTAATCTGTCACAGTCG
1 AGTCTTCCACTTGTTATCAGTCACAGTCGCAGTCACAGTCGTCCACTTGTAATCAGTCACAGTCG
608886 CAGTCTT
66 CAGTCTT
608893 AGTCTTCCACTTG-TATTCAGTCAC
1 AGTCTTCCACTTGTTA-TCAGTCAC
608917 CGCTGTGGGG
Statistics
Matches: 198, Mismatches: 17, Indels: 26
0.82 0.07 0.11
Matches are distributed among these distances:
60 44 0.22
61 2 0.01
62 2 0.01
63 3 0.02
66 10 0.05
69 3 0.02
70 2 0.01
71 4 0.02
72 128 0.65
ACGTcount: A:0.20, C:0.30, G:0.18, T:0.32
Consensus pattern (72 bp):
AGTCTTCCACTTGTTATCAGTCACAGTCGCAGTCACAGTCGTCCACTTGTAATCAGTCACAGTCG
CAGTCTT
Left flanking sequence: Indices 608117 -- 608616
GTAGGACACGGGATAGGGTACGTGGTAGTTACTGTCACGGGGCACTTCCATCCCTTGATAGTTTT
GGAGACCGTTCTTGTACAGGTGGGACAGGTATTCGGCAAGGTGCTGGTGACCGTGCCCTTGGGAC
AGCCGCAGGTACCGGGAACACGGACAGTTTTAGTGTGCTTACAAGTGAACTTCGACGGGCACGGG
ATAGTTGACGTTCGTGTGATGGGACAGGGACATGGGTGTGGCACGGTAACCGTAGGAAGCGCCGG
ACACGTCCTACAGGGCAAAGTTGCAGTGACAGGCTTCCACTTGTACTTAGTCACAGTCTTCCCCT
TGTAATCAGTGACAGTCTTGTGATCAGTAACAGTCTTCCACTTGTAATCAGTCACAGTCGTCCCC
TTATTATCGGTCACAGTCGCAGTCACAGTCTTCCACTTGTAATCTGTCACAGTCGTCCCCTTGTT
ATCAGTCACAGTCGCCGTCACAGTCTTCCACTTGTAATCAGTTAC
Right flanking sequence: Indices 608917 -- 609416
CGCTGTGGGGCAGATTGTGGGTTCGGTCACGGTGACACGACACTTTGTGATTATGACAGTGTTTG
GGCAGGGCGTGTAGGCCGGTCCGGTAGATGTGGGAGACACACACAGAGTCCACTGCTTTGGGTTG
CCGGTGCAAATGGGCAACAGCAGGGTCGGCCCGGTAGACGTAGGGGAAACGCACAGGGTCCACTG
TTTTGGGTTGCCGGTGCAAATGGGCAACAGCAGTGTGGGACCAGTAGATGTGGGAGAGATACACA
GCGTCCACTGCTTCGGGTTGCCCGTACAGATTGGCAACAGCAGAGTGGGTCCGGTCGAAGTTGGA
GACACGCACAGAGTCCACTGCTTGGGGTTACCGGTACAAATAGGCAACAGCGATGTAGCATTGGT
GGCTGCCGAGCCCACAGCCAAGGCCAGGATAATAAGGAACACAGTAAACTTAGTCATGTCACTGG
GCTACCCGTCCCCTCCCTCTAATTTATATTATTATCCCATCCCAC
Found at i:608739 original size:108 final size:108
Alignment explanation
Indices: 608610--608825 Score: 360
Period size: 108 Copynumber: 2.0 Consensus size: 108
608600 CACTTGTAAT
* * *
608610 CAGTTACAGTCGTCCCCTTGTTATCAGTCACAGTCGCAGTCACAGTCGTCCCCTTGTAATCTGTC
1 CAGTCACAGTCGTCCCCTTGTTATCAGTCACAGTAGCAGTCACAGTCGTCCACTTGTAATCTGTC
* ** *
608675 ACAGTCGCGGTCTTAGTCTTCCACTTGTAATCTGTCACAGTCG
66 ACAGTCGCAGTCACAGTCTTCCACTTGTAATCAGTCACAGTCG
*
608718 CAGTCACAGTCGTCCCCTTGTTATCAGTCACAGTAGCAGTCACAGTCTTCCACTTGTAATCTGTC
1 CAGTCACAGTCGTCCCCTTGTTATCAGTCACAGTAGCAGTCACAGTCGTCCACTTGTAATCTGTC
608783 ACAGTCGCAGTCACAGTCTTCCACTTGTAATCAGTCACAGTCG
66 ACAGTCGCAGTCACAGTCTTCCACTTGTAATCAGTCACAGTCG
608826 TCCCCTTGTT
Statistics
Matches: 100, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
108 100 1.00
ACGTcount: A:0.21, C:0.31, G:0.19, T:0.30
Consensus pattern (108 bp):
CAGTCACAGTCGTCCCCTTGTTATCAGTCACAGTAGCAGTCACAGTCGTCCACTTGTAATCTGTC
ACAGTCGCAGTCACAGTCTTCCACTTGTAATCAGTCACAGTCG
Left flanking sequence: Indices 608110 -- 608609
GCTCTATGTAGGACACGGGATAGGGTACGTGGTAGTTACTGTCACGGGGCACTTCCATCCCTTGA
TAGTTTTGGAGACCGTTCTTGTACAGGTGGGACAGGTATTCGGCAAGGTGCTGGTGACCGTGCCC
TTGGGACAGCCGCAGGTACCGGGAACACGGACAGTTTTAGTGTGCTTACAAGTGAACTTCGACGG
GCACGGGATAGTTGACGTTCGTGTGATGGGACAGGGACATGGGTGTGGCACGGTAACCGTAGGAA
GCGCCGGACACGTCCTACAGGGCAAAGTTGCAGTGACAGGCTTCCACTTGTACTTAGTCACAGTC
TTCCCCTTGTAATCAGTGACAGTCTTGTGATCAGTAACAGTCTTCCACTTGTAATCAGTCACAGT
CGTCCCCTTATTATCGGTCACAGTCGCAGTCACAGTCTTCCACTTGTAATCTGTCACAGTCGTCC
CCTTGTTATCAGTCACAGTCGCCGTCACAGTCTTCCACTTGTAAT
Right flanking sequence: Indices 608826 -- 609325
TCCCCTTGTTATCAGTCACAGTCGCAGTCACAGTCTTCCATTTGTAATCTGTCACAGTCGCAGTC
TTAGTCTTCCACTTGTATTCAGTCACCGCTGTGGGGCAGATTGTGGGTTCGGTCACGGTGACACG
ACACTTTGTGATTATGACAGTGTTTGGGCAGGGCGTGTAGGCCGGTCCGGTAGATGTGGGAGACA
CACACAGAGTCCACTGCTTTGGGTTGCCGGTGCAAATGGGCAACAGCAGGGTCGGCCCGGTAGAC
GTAGGGGAAACGCACAGGGTCCACTGTTTTGGGTTGCCGGTGCAAATGGGCAACAGCAGTGTGGG
ACCAGTAGATGTGGGAGAGATACACAGCGTCCACTGCTTCGGGTTGCCCGTACAGATTGGCAACA
GCAGAGTGGGTCCGGTCGAAGTTGGAGACACGCACAGAGTCCACTGCTTGGGGTTACCGGTACAA
ATAGGCAACAGCGATGTAGCATTGGTGGCTGCCGAGCCCACAGCC
Found at i:608744 original size:168 final size:167
Alignment explanation
Indices: 608552--608916 Score: 448
Period size: 168 Copynumber: 2.2 Consensus size: 167
608542 CTTGTAATCT
* * *
608552 GTCACAGTCGTCCCCTTGTTATCAGTCACAGTCGCCGTCACAGTCTTCCACTTGTAATCAGTTAC
1 GTCACAGTCGTCCCCTTGTTATCAGTCACAGTAGCAGTCACAGTCTTCCACTTGTAATCAGTCAC
* ** * * * * *
608617 AGT-C-GTCCCCTTGTTATCAGTCACAGTCGCAGTCACAGTCGTCCCCTTGTAATCTGTCACAGT
66 AGTCCAGTCACAGTCTT-CCACTCACAAT--CAGTCACAGTCGTCCCCTTGTAATCAGTCACAGT
* **
608680 CGCGGTCTTAGTCTTCCACTTGTAATCTGTCACAGTCGCA
128 CGCAGTCACAGTCTTCCACTTGTAATCTGTCACAGTCGCA
*
608720 GTCACAGTCGTCCCCTTGTTATCAGTCACAGTAGCAGTCACAGTCTTCCACTTGTAATCTGTCAC
1 GTCACAGTCGTCCCCTTGTTATCAGTCACAGTAGCAGTCACAGTCTTCCACTTGTAATCAGTCAC
*** *
608785 AGTCGCAGTCACAGTCTTCCACTTGTAATCAGTCACAGTCGTCCCCTTGTTATCAGTCACAGTCG
66 AGTC-CAGTCACAGTCTTCCACTCACAATCAGTCACAGTCGTCCCCTTGTAATCAGTCACAGTCG
*
608850 CAGTCACAGTCTTCCATTTGTAATCTGTCACAGTCGCA
130 CAGTCACAGTCTTCCACTTGTAATCTGTCACAGTCGCA
** * *
608888 GTCTTAGTCTTCCACTTG-TATTCAGTCAC
1 GTCACAGTCGTCCCCTTGTTA-TCAGTCAC
608917 CGCTGTGGGG
Statistics
Matches: 169, Mismatches: 24, Indels: 8
0.84 0.12 0.04
Matches are distributed among these distances:
167 2 0.01
168 154 0.91
170 6 0.04
171 7 0.04
ACGTcount: A:0.20, C:0.31, G:0.18, T:0.32
Consensus pattern (167 bp):
GTCACAGTCGTCCCCTTGTTATCAGTCACAGTAGCAGTCACAGTCTTCCACTTGTAATCAGTCAC
AGTCCAGTCACAGTCTTCCACTCACAATCAGTCACAGTCGTCCCCTTGTAATCAGTCACAGTCGC
AGTCACAGTCTTCCACTTGTAATCTGTCACAGTCGCA
Left flanking sequence: Indices 608052 -- 608551
ACGTGGGAAACATTCAATTACTACAAAAAGGCTACTGGCAAAAGAACAGACTGCTCTGGCTCTAT
GTAGGACACGGGATAGGGTACGTGGTAGTTACTGTCACGGGGCACTTCCATCCCTTGATAGTTTT
GGAGACCGTTCTTGTACAGGTGGGACAGGTATTCGGCAAGGTGCTGGTGACCGTGCCCTTGGGAC
AGCCGCAGGTACCGGGAACACGGACAGTTTTAGTGTGCTTACAAGTGAACTTCGACGGGCACGGG
ATAGTTGACGTTCGTGTGATGGGACAGGGACATGGGTGTGGCACGGTAACCGTAGGAAGCGCCGG
ACACGTCCTACAGGGCAAAGTTGCAGTGACAGGCTTCCACTTGTACTTAGTCACAGTCTTCCCCT
TGTAATCAGTGACAGTCTTGTGATCAGTAACAGTCTTCCACTTGTAATCAGTCACAGTCGTCCCC
TTATTATCGGTCACAGTCGCAGTCACAGTCTTCCACTTGTAATCT
Right flanking sequence: Indices 608917 -- 609416
CGCTGTGGGGCAGATTGTGGGTTCGGTCACGGTGACACGACACTTTGTGATTATGACAGTGTTTG
GGCAGGGCGTGTAGGCCGGTCCGGTAGATGTGGGAGACACACACAGAGTCCACTGCTTTGGGTTG
CCGGTGCAAATGGGCAACAGCAGGGTCGGCCCGGTAGACGTAGGGGAAACGCACAGGGTCCACTG
TTTTGGGTTGCCGGTGCAAATGGGCAACAGCAGTGTGGGACCAGTAGATGTGGGAGAGATACACA
GCGTCCACTGCTTCGGGTTGCCCGTACAGATTGGCAACAGCAGAGTGGGTCCGGTCGAAGTTGGA
GACACGCACAGAGTCCACTGCTTGGGGTTACCGGTACAAATAGGCAACAGCGATGTAGCATTGGT
GGCTGCCGAGCCCACAGCCAAGGCCAGGATAATAAGGAACACAGTAAACTTAGTCATGTCACTGG
GCTACCCGTCCCCTCCCTCTAATTTATATTATTATCCCATCCCAC
Found at i:608822 original size:24 final size:24
Alignment explanation
Indices: 608790--608849 Score: 93
Period size: 24 Copynumber: 2.5 Consensus size: 24
608780 GTCACAGTCG
*
608790 CAGTCACAGTCTTCCACTTGTAAT
1 CAGTCACAGTCGTCCACTTGTAAT
* *
608814 CAGTCACAGTCGTCCCCTTGTTAT
1 CAGTCACAGTCGTCCACTTGTAAT
608838 CAGTCACAGTCG
1 CAGTCACAGTCG
608850 CAGTCACAGT
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 33 1.00
ACGTcount: A:0.22, C:0.32, G:0.17, T:0.30
Consensus pattern (24 bp):
CAGTCACAGTCGTCCACTTGTAAT
Left flanking sequence: Indices 608290 -- 608789
AGTGAACTTCGACGGGCACGGGATAGTTGACGTTCGTGTGATGGGACAGGGACATGGGTGTGGCA
CGGTAACCGTAGGAAGCGCCGGACACGTCCTACAGGGCAAAGTTGCAGTGACAGGCTTCCACTTG
TACTTAGTCACAGTCTTCCCCTTGTAATCAGTGACAGTCTTGTGATCAGTAACAGTCTTCCACTT
GTAATCAGTCACAGTCGTCCCCTTATTATCGGTCACAGTCGCAGTCACAGTCTTCCACTTGTAAT
CTGTCACAGTCGTCCCCTTGTTATCAGTCACAGTCGCCGTCACAGTCTTCCACTTGTAATCAGTT
ACAGTCGTCCCCTTGTTATCAGTCACAGTCGCAGTCACAGTCGTCCCCTTGTAATCTGTCACAGT
CGCGGTCTTAGTCTTCCACTTGTAATCTGTCACAGTCGCAGTCACAGTCGTCCCCTTGTTATCAG
TCACAGTAGCAGTCACAGTCTTCCACTTGTAATCTGTCACAGTCG
Right flanking sequence: Indices 608850 -- 609349
CAGTCACAGTCTTCCATTTGTAATCTGTCACAGTCGCAGTCTTAGTCTTCCACTTGTATTCAGTC
ACCGCTGTGGGGCAGATTGTGGGTTCGGTCACGGTGACACGACACTTTGTGATTATGACAGTGTT
TGGGCAGGGCGTGTAGGCCGGTCCGGTAGATGTGGGAGACACACACAGAGTCCACTGCTTTGGGT
TGCCGGTGCAAATGGGCAACAGCAGGGTCGGCCCGGTAGACGTAGGGGAAACGCACAGGGTCCAC
TGTTTTGGGTTGCCGGTGCAAATGGGCAACAGCAGTGTGGGACCAGTAGATGTGGGAGAGATACA
CAGCGTCCACTGCTTCGGGTTGCCCGTACAGATTGGCAACAGCAGAGTGGGTCCGGTCGAAGTTG
GAGACACGCACAGAGTCCACTGCTTGGGGTTACCGGTACAAATAGGCAACAGCGATGTAGCATTG
GTGGCTGCCGAGCCCACAGCCAAGGCCAGGATAATAAGGAACACA
Found at i:608854 original size:36 final size:36
Alignment explanation
Indices: 608814--608916 Score: 127
Period size: 36 Copynumber: 2.9 Consensus size: 36
608804 CACTTGTAAT
* *
608814 CAGTCACAGTCGTCCCCTTGTTATCAGTCACAGTCG
1 CAGTCACAGTCTTCCACTTGTTATCAGTCACAGTCG
* * *
608850 CAGTCACAGTCTTCCATTTGTAATCTGTCACAGTCG
1 CAGTCACAGTCTTCCACTTGTTATCAGTCACAGTCG
**
608886 CAGTCTTAGTCTTCCACTTG-TATTCAGTCAC
1 CAGTCACAGTCTTCCACTTGTTA-TCAGTCAC
608917 CGCTGTGGGG
Statistics
Matches: 56, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
35 1 0.02
36 55 0.98
ACGTcount: A:0.20, C:0.30, G:0.17, T:0.33
Consensus pattern (36 bp):
CAGTCACAGTCTTCCACTTGTTATCAGTCACAGTCG
Left flanking sequence: Indices 608314 -- 608813
AGTTGACGTTCGTGTGATGGGACAGGGACATGGGTGTGGCACGGTAACCGTAGGAAGCGCCGGAC
ACGTCCTACAGGGCAAAGTTGCAGTGACAGGCTTCCACTTGTACTTAGTCACAGTCTTCCCCTTG
TAATCAGTGACAGTCTTGTGATCAGTAACAGTCTTCCACTTGTAATCAGTCACAGTCGTCCCCTT
ATTATCGGTCACAGTCGCAGTCACAGTCTTCCACTTGTAATCTGTCACAGTCGTCCCCTTGTTAT
CAGTCACAGTCGCCGTCACAGTCTTCCACTTGTAATCAGTTACAGTCGTCCCCTTGTTATCAGTC
ACAGTCGCAGTCACAGTCGTCCCCTTGTAATCTGTCACAGTCGCGGTCTTAGTCTTCCACTTGTA
ATCTGTCACAGTCGCAGTCACAGTCGTCCCCTTGTTATCAGTCACAGTAGCAGTCACAGTCTTCC
ACTTGTAATCTGTCACAGTCGCAGTCACAGTCTTCCACTTGTAAT
Right flanking sequence: Indices 608917 -- 609416
CGCTGTGGGGCAGATTGTGGGTTCGGTCACGGTGACACGACACTTTGTGATTATGACAGTGTTTG
GGCAGGGCGTGTAGGCCGGTCCGGTAGATGTGGGAGACACACACAGAGTCCACTGCTTTGGGTTG
CCGGTGCAAATGGGCAACAGCAGGGTCGGCCCGGTAGACGTAGGGGAAACGCACAGGGTCCACTG
TTTTGGGTTGCCGGTGCAAATGGGCAACAGCAGTGTGGGACCAGTAGATGTGGGAGAGATACACA
GCGTCCACTGCTTCGGGTTGCCCGTACAGATTGGCAACAGCAGAGTGGGTCCGGTCGAAGTTGGA
GACACGCACAGAGTCCACTGCTTGGGGTTACCGGTACAAATAGGCAACAGCGATGTAGCATTGGT
GGCTGCCGAGCCCACAGCCAAGGCCAGGATAATAAGGAACACAGTAAACTTAGTCATGTCACTGG
GCTACCCGTCCCCTCCCTCTAATTTATATTATTATCCCATCCCAC
Found at i:609102 original size:75 final size:74
Alignment explanation
Indices: 609002--609292 Score: 285
Period size: 75 Copynumber: 3.9 Consensus size: 74
608992 GTAGGCCGGT
* * * *
609002 CCGGTAGATGTGGGAGACACACACAGAGTCCACTGCTTTGGGTTGCCGGTGCAAATGGGCAACAG
1 CCGGTAGAAGTGGG-GAAACGCACAGAGTCCACTGCTTTGGGTTGCCGGTACAAATGGGCAACAG
* * *
609067 CAGGGTCGGC
65 CAGAGTGGGA
* * * *
609077 CCGGTAGACGTAGGGGAAACGCACAGGGTCCACTGTTTTGGGTTGCCGGTGCAAATGGGCAACAG
1 CCGGTAGAAGT-GGGGAAACGCACAGAGTCCACTGCTTTGGGTTGCCGGTACAAATGGGCAACAG
*
609142 CAGTGTGGGA
65 CAGAGTGGGA
* * * ** * * * * *
609152 CCAGTAGATGTGGGAGAGATACACAGCGTCCACTGCTTCGGGTTGCCCGTACAGATTGGCAACAG
1 CCGGTAGAAGTGGG-GAAACGCACAGAGTCCACTGCTTTGGGTTGCCGGTACAAATGGGCAACAG
*
609217 CAGAGTGGGT
65 CAGAGTGGGA
* * * * * *
609227 CCGGTCGAAGTTGGAGACACGCACAGAGTCCACTGCTTGGGGTTACCGGTACAAATAGGCAACAG
1 CCGGTAGAAG-TGGGGAAACGCACAGAGTCCACTGCTTTGGGTTGCCGGTACAAATGGGCAACAG
609292 C
65 C
609293 GATGTAGCAT
Statistics
Matches: 178, Mismatches: 35, Indels: 6
0.81 0.16 0.03
Matches are distributed among these distances:
74 3 0.02
75 169 0.95
76 6 0.03
ACGTcount: A:0.24, C:0.23, G:0.35, T:0.18
Consensus pattern (74 bp):
CCGGTAGAAGTGGGGAAACGCACAGAGTCCACTGCTTTGGGTTGCCGGTACAAATGGGCAACAGC
AGAGTGGGA
Left flanking sequence: Indices 608502 -- 609001
TCCCCTTATTATCGGTCACAGTCGCAGTCACAGTCTTCCACTTGTAATCTGTCACAGTCGTCCCC
TTGTTATCAGTCACAGTCGCCGTCACAGTCTTCCACTTGTAATCAGTTACAGTCGTCCCCTTGTT
ATCAGTCACAGTCGCAGTCACAGTCGTCCCCTTGTAATCTGTCACAGTCGCGGTCTTAGTCTTCC
ACTTGTAATCTGTCACAGTCGCAGTCACAGTCGTCCCCTTGTTATCAGTCACAGTAGCAGTCACA
GTCTTCCACTTGTAATCTGTCACAGTCGCAGTCACAGTCTTCCACTTGTAATCAGTCACAGTCGT
CCCCTTGTTATCAGTCACAGTCGCAGTCACAGTCTTCCATTTGTAATCTGTCACAGTCGCAGTCT
TAGTCTTCCACTTGTATTCAGTCACCGCTGTGGGGCAGATTGTGGGTTCGGTCACGGTGACACGA
CACTTTGTGATTATGACAGTGTTTGGGCAGGGCGTGTAGGCCGGT
Right flanking sequence: Indices 609293 -- 609792
GATGTAGCATTGGTGGCTGCCGAGCCCACAGCCAAGGCCAGGATAATAAGGAACACAGTAAACTT
AGTCATGTCACTGGGCTACCCGTCCCCTCCCTCTAATTTATATTATTATCCCATCCCACTCCTAT
AATTAGTAGCCCCTTAATGACCACTCGATGGTGGCTTTGACAAGATCAACGGCCAATTAATCGCA
AGACTACGCCTGAAGGGCTAAATGGAATGTCGTTCTGTGTCGCTCTGGTGTCGTTGAGCATATAC
GAAACTTACGCTCGCCTCAGTGCCCCACCAAAAGGAATACCCGAGGATCCACCGTAAGCCCTCAC
TCGTAAAGCGTAAACCCCGTACCAAACGATTGGCACCTGAAAAGGCTTTCCGATGCCGATTACAA
TTGAACACTCCCAGGCTGTCCCCTCTGCAACCTGCTCTGCTACTGGTTCCTCTTTTTTGCCACTG
CGGGATTTCGCGGGGTCGCCTACGAGCACCGGACTCGCCCGGCCT
Found at i:609276 original size:150 final size:150
Alignment explanation
Indices: 609005--609292 Score: 378
Period size: 150 Copynumber: 1.9 Consensus size: 150
608995 GGCCGGTCCG
* * *
609005 GTAGATGTGGGAGACACACACAGAGTCCACTGCTTTGGGTTGCCGGTGCAAATGGGCAACAGCAG
1 GTAGATGTGGGAGACACACACAGAGTCCACTGCTTCGGGTTGCCCGTACAAATGGGCAACAGCAG
* * * * * * * * *
609070 GGTCGGCCCGGTAGACGTAGGGGAAACGCACAGGGTCCACTGTTTTGGGTTGCCGGTGCAAATGG
66 AGTCGGCCCGGTAGAAGTAGGAGAAACGCACAGAGTCCACTGCTTGGGGTTACCGGTACAAATAG
609135 GCAACAGCAGTGTGGGACCA
131 GCAACAGCAGTGTGGGACCA
* * * * *
609155 GTAGATGTGGGAGAGATACACAGCGTCCACTGCTTCGGGTTGCCCGTACAGATTGGCAACAGCAG
1 GTAGATGTGGGAGACACACACAGAGTCCACTGCTTCGGGTTGCCCGTACAAATGGGCAACAGCAG
* * * * *
609220 AGTGGGTCCGGTCGAAGTTGGAGACACGCACAGAGTCCACTGCTTGGGGTTACCGGTACAAATAG
66 AGTCGGCCCGGTAGAAGTAGGAGAAACGCACAGAGTCCACTGCTTGGGGTTACCGGTACAAATAG
609285 GCAACAGC
131 GCAACAGC
609293 GATGTAGCAT
Statistics
Matches: 116, Mismatches: 22, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
150 116 1.00
ACGTcount: A:0.24, C:0.23, G:0.35, T:0.18
Consensus pattern (150 bp):
GTAGATGTGGGAGACACACACAGAGTCCACTGCTTCGGGTTGCCCGTACAAATGGGCAACAGCAG
AGTCGGCCCGGTAGAAGTAGGAGAAACGCACAGAGTCCACTGCTTGGGGTTACCGGTACAAATAG
GCAACAGCAGTGTGGGACCA
Left flanking sequence: Indices 608505 -- 609004
CCTTATTATCGGTCACAGTCGCAGTCACAGTCTTCCACTTGTAATCTGTCACAGTCGTCCCCTTG
TTATCAGTCACAGTCGCCGTCACAGTCTTCCACTTGTAATCAGTTACAGTCGTCCCCTTGTTATC
AGTCACAGTCGCAGTCACAGTCGTCCCCTTGTAATCTGTCACAGTCGCGGTCTTAGTCTTCCACT
TGTAATCTGTCACAGTCGCAGTCACAGTCGTCCCCTTGTTATCAGTCACAGTAGCAGTCACAGTC
TTCCACTTGTAATCTGTCACAGTCGCAGTCACAGTCTTCCACTTGTAATCAGTCACAGTCGTCCC
CTTGTTATCAGTCACAGTCGCAGTCACAGTCTTCCATTTGTAATCTGTCACAGTCGCAGTCTTAG
TCTTCCACTTGTATTCAGTCACCGCTGTGGGGCAGATTGTGGGTTCGGTCACGGTGACACGACAC
TTTGTGATTATGACAGTGTTTGGGCAGGGCGTGTAGGCCGGTCCG
Right flanking sequence: Indices 609293 -- 609792
GATGTAGCATTGGTGGCTGCCGAGCCCACAGCCAAGGCCAGGATAATAAGGAACACAGTAAACTT
AGTCATGTCACTGGGCTACCCGTCCCCTCCCTCTAATTTATATTATTATCCCATCCCACTCCTAT
AATTAGTAGCCCCTTAATGACCACTCGATGGTGGCTTTGACAAGATCAACGGCCAATTAATCGCA
AGACTACGCCTGAAGGGCTAAATGGAATGTCGTTCTGTGTCGCTCTGGTGTCGTTGAGCATATAC
GAAACTTACGCTCGCCTCAGTGCCCCACCAAAAGGAATACCCGAGGATCCACCGTAAGCCCTCAC
TCGTAAAGCGTAAACCCCGTACCAAACGATTGGCACCTGAAAAGGCTTTCCGATGCCGATTACAA
TTGAACACTCCCAGGCTGTCCCCTCTGCAACCTGCTCTGCTACTGGTTCCTCTTTTTTGCCACTG
CGGGATTTCGCGGGGTCGCCTACGAGCACCGGACTCGCCCGGCCT
Found at i:610689 original size:23 final size:23
Alignment explanation
Indices: 610656--610713 Score: 98
Period size: 23 Copynumber: 2.5 Consensus size: 23
610646 CCTAGGTGAC
610656 CTAGCTCCAGCCACCTGGCTCTTT
1 CTAGC-CCAGCCACCTGGCTCTTT
*
610680 CTAGCCCAGCCACCTGGTTCTTT
1 CTAGCCCAGCCACCTGGCTCTTT
610703 CTAGCCCAGCC
1 CTAGCCCAGCC
610714 GGCTTTTCTA
Statistics
Matches: 33, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
23 28 0.85
24 5 0.15
ACGTcount: A:0.14, C:0.43, G:0.17, T:0.26
Consensus pattern (23 bp):
CTAGCCCAGCCACCTGGCTCTTT
Left flanking sequence: Indices 610156 -- 610655
TGAACATGGTGGGTTGGTTTATAATGGTCCCGCTATGGTTGGGCGAAAAATTTGAGACCGGGAGT
GTGCAGGATGCGGTTTGCAGCAAGGCGAGCAAGGGCAGGGTGTGGGGGCGAGAAGGTGGGTGAGA
GGGTGGTTTTGGGCTGGTGGGGTGGATACTACGTGGTGTGCTAGGTGTTACGGTGGGCTGGTGTT
TGTGTTTTGATTGCGGATAAGGGTGGGCTGGGGAGTATGCTTTCTAAGCCCGAAAAACGAGAGGT
ACTCGTATGAGCTTCACTTGAGGGACTATGGCTTTGAGACTCCTTCGTGGGATTCTCCTGGTTTG
CTCTAGCTACCTAGCTCTTTTCTTGTTGCTTCAGTCTAGTCAATTAGATCGTATAGATCGTATAG
CGTTATACACCTCGTAAACTAGATATTCAACTTTTTCTCACTACCCTTGTCAACATGATCATTCA
TAGAGTTTTCTCACTACTCGAGAGACTGACTCTCTCCTAGGTGAC
Right flanking sequence: Indices 610714 -- 611213
GGCTTTTCTAGCTCAAGTTCATAACTTCACTCCCCTCTTCCTAACTTAAACCTACTCTACACCAC
TTCCTGCTGAGCCTTACACCAATCACTAACTGCTTCAATTGTCTCTTACTATACTCTACCCCTAG
TTCACCATCAGCCGCCAGTTGATCGCCGTGCGCTTCTTGCCCAGCTTCTGGCTCGCAGCAAACCC
GTTGGCCGCCGACGACTTGTCGGACGAGAGCCCCAGGATCCCCGACAGCGCCAGCGACGTGGTGG
ACTGCGTCCGCACCAACCGCGCGCCCGGGATCGACGAGCTCGGAATCAGCAGCGCCGGCAACGAC
GGCACCGACCCCGTGGTGGTGTTCCCCGTCAGCGCCGCCAGCAACGAGCGCTTGTCGTTCACCAG
CAGCGGCACCGGCGTGGGCTGGAAGTGCGGGGTGGCGTGGTTGTAGGCCACGTTCTCGTAGTCGG
TGTTGATCTTCAACGCCTCGATGTCCTCCTTGAAGTTCTTGCGGT
Found at i:617628 original size:15 final size:16
Alignment explanation
Indices: 617582--617673 Score: 106
Period size: 15 Copynumber: 6.1 Consensus size: 16
617572 AAACTTGGCG
617582 TGAACTTGGCACCGG-
1 TGAACTTGGCACCGGT
*
617597 TCAACTTGGCACCGGT
1 TGAACTTGGCACCGGT
617613 T-AACTTGGCACCGGT
1 TGAACTTGGCACCGGT
*
617628 TGAA-TT-GTACCGGT
1 TGAACTTGGCACCGGT
*
617642 TGAAC-T-GCACCAGT
1 TGAACTTGGCACCGGT
*
617656 TGAACTTGGCACTGGT
1 TGAACTTGGCACCGGT
617672 TG
1 TG
617674 GCTGTGATTG
Statistics
Matches: 66, Mismatches: 6, Indels: 9
0.81 0.07 0.11
Matches are distributed among these distances:
14 23 0.35
15 32 0.48
16 11 0.17
ACGTcount: A:0.21, C:0.24, G:0.28, T:0.27
Consensus pattern (16 bp):
TGAACTTGGCACCGGT
Left flanking sequence: Indices 617082 -- 617581
GTGGCCTGGCGACAGCTGAGCGGGCGATGGCGTGGTTCACTGCGTCGGGCCGTGGCAGTCAGCGG
GCGGCGTGGAACGCAGTCAGCGGGTGTCTGCTGACGGCCCGTAGCGATGTTGCATGTCGGGTGTG
CGGACACAAAACGCGAGTAATGACAAAGGATCTGGGTGATGGGGGGAAGGGTAGCCGAGAGCGGG
CGATGCTGCGTAGGCGACGGCGATGTTCCATGCGTGGTTATTTTAGGTGCGGGTGATGTAGGTTG
GTGGGAGTGTGTGAGGTGGTGTTATGAATTGGTGGTAGTGGTGTTGAGAGTTGGTGATACGAGTT
GGCTGAATCGGGTATAATTGTGACGAGTCACAATAGAGAAGAAACGTGTGTCGGGGTGATTTGGG
TTTGTGGAGACCGCGGTGCCTGGTGGGGTCGCTGAGAAGTACTTCTTGAAACAGCTTGAAATTAG
GCAGTGGCACTGCTTGAAAGTACTGATTGACTTGGAAACTTGGCG
Right flanking sequence: Indices 617674 -- 618173
GCTGTGATTGAATTTTGTAGTCGCTGAAAACTAGCTGGAATAAGCAGAAACCATCACTCAGCTTT
GAGTAGTACAAGGTTTTGTAAGACAGACATTCTATGACTCTAGAGAGCTATCACTGTGAGCACAA
TTGACAGGTCCAGTACCTACATCAGATCAAACTTCGGTCATTAGAGACAATCAACCAGAGTAACC
CACCCAACTACAACCCATCCTTAACCCCATTACTATTATAATACACTCTATACATTACGCGAGCC
AGTGGGCAAACCGCGACGCCACGTCCTTGACGCTGCGCCGGTTGTACAGCCGGCCCTTGTCCCAC
AAATACCGGTCCATCTCGGTGCGCCCGGTGTCAAAGTCGATCGTCTCGAGCGTGGGGATCCGCGA
CCGACGAATGATCTTGTAGCCAAAGTAGAGCACGAAAAACACGATGATCGTGCCGTACGAGCTGA
AAAAGAACCAGGTGTTCCACTCGCCGCCTAGAAACACCACGTAGC
Found at i:617641 original size:14 final size:14
Alignment explanation
Indices: 617605--617661 Score: 62
Period size: 14 Copynumber: 4.0 Consensus size: 14
617595 GGTCAACTTG
617605 GCACCGGTT-AACTT
1 GCACCGGTTGAAC-T
*
617619 GGCACCGGTTGAATT
1 -GCACCGGTTGAACT
*
617634 GTACCGGTTGAACT
1 GCACCGGTTGAACT
*
617648 GCACCAGTTGAACT
1 GCACCGGTTGAACT
617662 TGGCACTGGT
Statistics
Matches: 36, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
14 24 0.67
15 10 0.28
16 2 0.06
ACGTcount: A:0.23, C:0.25, G:0.26, T:0.26
Consensus pattern (14 bp):
GCACCGGTTGAACT
Left flanking sequence: Indices 617105 -- 617604
GCGATGGCGTGGTTCACTGCGTCGGGCCGTGGCAGTCAGCGGGCGGCGTGGAACGCAGTCAGCGG
GTGTCTGCTGACGGCCCGTAGCGATGTTGCATGTCGGGTGTGCGGACACAAAACGCGAGTAATGA
CAAAGGATCTGGGTGATGGGGGGAAGGGTAGCCGAGAGCGGGCGATGCTGCGTAGGCGACGGCGA
TGTTCCATGCGTGGTTATTTTAGGTGCGGGTGATGTAGGTTGGTGGGAGTGTGTGAGGTGGTGTT
ATGAATTGGTGGTAGTGGTGTTGAGAGTTGGTGATACGAGTTGGCTGAATCGGGTATAATTGTGA
CGAGTCACAATAGAGAAGAAACGTGTGTCGGGGTGATTTGGGTTTGTGGAGACCGCGGTGCCTGG
TGGGGTCGCTGAGAAGTACTTCTTGAAACAGCTTGAAATTAGGCAGTGGCACTGCTTGAAAGTAC
TGATTGACTTGGAAACTTGGCGTGAACTTGGCACCGGTCAACTTG
Right flanking sequence: Indices 617662 -- 618161
TGGCACTGGTTGGCTGTGATTGAATTTTGTAGTCGCTGAAAACTAGCTGGAATAAGCAGAAACCA
TCACTCAGCTTTGAGTAGTACAAGGTTTTGTAAGACAGACATTCTATGACTCTAGAGAGCTATCA
CTGTGAGCACAATTGACAGGTCCAGTACCTACATCAGATCAAACTTCGGTCATTAGAGACAATCA
ACCAGAGTAACCCACCCAACTACAACCCATCCTTAACCCCATTACTATTATAATACACTCTATAC
ATTACGCGAGCCAGTGGGCAAACCGCGACGCCACGTCCTTGACGCTGCGCCGGTTGTACAGCCGG
CCCTTGTCCCACAAATACCGGTCCATCTCGGTGCGCCCGGTGTCAAAGTCGATCGTCTCGAGCGT
GGGGATCCGCGACCGACGAATGATCTTGTAGCCAAAGTAGAGCACGAAAAACACGATGATCGTGC
CGTACGAGCTGAAAAAGAACCAGGTGTTCCACTCGCCGCCTAGAA
Found at i:623289 original size:15 final size:15
Alignment explanation
Indices: 623264--623299 Score: 63
Period size: 15 Copynumber: 2.3 Consensus size: 15
623254 CGAGATGGAC
623264 AGCTCGCTGGAGCTGG
1 AGCT-GCTGGAGCTGG
623280 AGCTGCTGGAGCTGG
1 AGCTGCTGGAGCTGG
623295 AGCTG
1 AGCTG
623300 GAGACCGACT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 16 0.80
16 4 0.20
ACGTcount: A:0.14, C:0.22, G:0.44, T:0.19
Consensus pattern (15 bp):
AGCTGCTGGAGCTGG
Left flanking sequence: Indices 622764 -- 623263
GCCACCTCTGCAAACACCGTCCCATTGGCCCAGGCCCCCCAAAACGTCATTAAGCGCTGGCTTCG
CGCCCACCCAACGCACCTCCCGCTTCTGTCGCCTTCCATTCACCGGTATACGCGTCCGGCATGCG
CCTTGCTGCACGCGCCGCACAGCTCATCGCCTCCCCCCCACGGCCCGAGAACTCTATATAACTTC
GGTTGCCAGCCACTTTTCACTAACCAACCATGTCATACAAATCCCACAACCACAGATACGCATCC
AAGCAGCATCGCAGTGGGAGACACAGCCACGGCCACGGGCACCACCACCGCCTGGGCCGCCATGG
CCATCGCGAGGACCGTCGTCCTCACGGCCACAAGCGCCACTACCGCAAGTACTACCACCAGCAGC
CCAGCGACATGGTGTACGTGGAGGAGCCCACCGACAACCTGAGCGAGGAGCTCTCTGAGGAGGAG
GAGGAGTCCTACGACTTTGCCTTGGAGTCCAACTCCGAGATGGAC
Right flanking sequence: Indices 623300 -- 623799
GAGACCGACTCCGACTTTGACGACGCCCGTGACATCATGTTCTACGACAACGTCGAGTCTGACGG
CGTTTCCGACCTTGACGACGACGAGTTGCTCGACCTCCTTGAGGAGGAGGGCATCGTCGCCAACC
TCAACGACGAGTTGGTGGCCTACTACGACTCGGAGCTGGAGCTGGAGCTGGAGCTCGACTCCGAC
GACGTCGAGGAGATCTTGGACATCATCGACTTGAACGACCAGTTGCAGGCGCAGGCGATGGCCGA
CCTCGACTCCGACCTCGAGTACTCCTCCGACGAGGAGACTTTGGACGACCAGTTGAAGTTGGAGG
CGGTGCGCCAGTTCTTTGAGGACGAGATGGTGTCGCTGGACGAGATCTCCGACTCCGAGACCGAG
TTTGACGCCGGCAACCCCGACCTGTACCAGTTCATTTGCGACAACTGCGAGGACGAGGAGGACGA
GCTGACTGACGACGAGGGGCTCACCATCTACCGCCACGTTTTCGA
Found at i:624143 original size:15 final size:15
Alignment explanation
Indices: 624140--624201 Score: 52
Period size: 15 Copynumber: 3.9 Consensus size: 15
624130 CGACTCTGAG
* *
624140 GACTCTGAGGACTCT
1 GACTCCGAGGACTCC
*
624155 GATTCCGAGGACTCTGAC
1 GACTCCGAGGACTC---C
* *
624173 GACTCTGACGACTCC
1 GACTCCGAGGACTCC
624188 GACTCCGAGGACTC
1 GACTCCGAGGACTC
624202 TGAGGATTCT
Statistics
Matches: 36, Mismatches: 8, Indels: 6
0.72 0.16 0.12
Matches are distributed among these distances:
15 25 0.69
18 11 0.31
ACGTcount: A:0.21, C:0.32, G:0.26, T:0.21
Consensus pattern (15 bp):
GACTCCGAGGACTCC
Left flanking sequence: Indices 623640 -- 624139
TTGAGGACGAGATGGTGTCGCTGGACGAGATCTCCGACTCCGAGACCGAGTTTGACGCCGGCAAC
CCCGACCTGTACCAGTTCATTTGCGACAACTGCGAGGACGAGGAGGACGAGCTGACTGACGACGA
GGGGCTCACCATCTACCGCCACGTTTTCGACCTCCCCGAGGACGAGGACGACCTGACCGACGAGG
AGTTGATGGCCGAGGACTCTGACGACGAGCCTGACATCGTTGACTTGACCTCCGACTTGATCGAC
TCCAAGGACATCGAGGTGGAGGAGGGTGACGACCACTACAAGGTGACCATCCGCTTGCCCTCGAT
TGACCAGGACGAGCTCAAGATCGACTTCAACAAGGCCGAGAACGAGTTGGTGGTGAACGGCAAGT
TCGACTTCACCATCGACGACGGCGAGGACGACGAGATCGAGGCCGTGGTGACTTTGGAGGAGCAG
GACGACACCACTCCCGACTCGCTGGACTCCGACTCCGACTCTGAG
Right flanking sequence: Indices 624202 -- 624701
TGAGGATTCTGAGGACTCTGAGGACTCCGACTCCGACTCTGATTCCGACCTGCTGGACTCGTCCG
ACTCCGAGGCGGAGGCTGAGGAGGAGCAGCGGGCCATCATCGAGGCTGCCGAGGAGGCTGCCGAG
GCCCTTGAGGACGACGACGACGAAGACTTTGTTGACGACGACGCTGCTGACGTCACCTGCGACAT
TGACGACGACGAGCTCTTGGAGGACGCCCAGTACCTCACCAAGGACTTCCAGGGCCAGGAGATCG
GGTTCGAGAAGCACTTCCAGTTCGACAAGTTGGTTGCCTGGGAGCTGATCATCGCCAAGTTCAAC
GATGACGGCGAGCTCGAGATCACCGTCCCCCACACCGGGGTTGACTACCTCAAGGAGGTCAACTA
CGTGCCTATTGCCATCCAGGCGCTGTCTCCCGTGCTCATTGCCGACGTCGAGGAAGCCGACGTTG
ACATGGACGAGGAGTAAACCTGCACCCACTTCACTTGCACTTAAT
Found at i:624145 original size:9 final size:9
Alignment explanation
Indices: 624131--624228 Score: 91
Period size: 9 Copynumber: 11.6 Consensus size: 9
624121 CTCCGACTCC
624131 GACTCTGAG
1 GACTCTGAG
624140 GACTCTGAG
1 GACTCTGAG
624149 GACTCT---
1 GACTCTGAG
* *
624155 GATTCCGAG
1 GACTCTGAG
*
624164 GACTCTGAC
1 GACTCTGAG
*
624173 GACTCTGAC
1 GACTCTGAG
*
624182 GACTC---C
1 GACTCTGAG
*
624188 GACTCCGAG
1 GACTCTGAG
624197 GACTCTGAG
1 GACTCTGAG
*
624206 GATTCTGAG
1 GACTCTGAG
624215 GACTCTGAG
1 GACTCTGAG
624224 GACTC
1 GACTC
624229 CGACTCCGAC
Statistics
Matches: 74, Mismatches: 9, Indels: 12
0.78 0.09 0.13
Matches are distributed among these distances:
6 10 0.14
9 64 0.86
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.22
Consensus pattern (9 bp):
GACTCTGAG
Left flanking sequence: Indices 623631 -- 624130
GCCAGTTCTTTGAGGACGAGATGGTGTCGCTGGACGAGATCTCCGACTCCGAGACCGAGTTTGAC
GCCGGCAACCCCGACCTGTACCAGTTCATTTGCGACAACTGCGAGGACGAGGAGGACGAGCTGAC
TGACGACGAGGGGCTCACCATCTACCGCCACGTTTTCGACCTCCCCGAGGACGAGGACGACCTGA
CCGACGAGGAGTTGATGGCCGAGGACTCTGACGACGAGCCTGACATCGTTGACTTGACCTCCGAC
TTGATCGACTCCAAGGACATCGAGGTGGAGGAGGGTGACGACCACTACAAGGTGACCATCCGCTT
GCCCTCGATTGACCAGGACGAGCTCAAGATCGACTTCAACAAGGCCGAGAACGAGTTGGTGGTGA
ACGGCAAGTTCGACTTCACCATCGACGACGGCGAGGACGACGAGATCGAGGCCGTGGTGACTTTG
GAGGAGCAGGACGACACCACTCCCGACTCGCTGGACTCCGACTCC
Right flanking sequence: Indices 624229 -- 624728
CGACTCCGACTCTGATTCCGACCTGCTGGACTCGTCCGACTCCGAGGCGGAGGCTGAGGAGGAGC
AGCGGGCCATCATCGAGGCTGCCGAGGAGGCTGCCGAGGCCCTTGAGGACGACGACGACGAAGAC
TTTGTTGACGACGACGCTGCTGACGTCACCTGCGACATTGACGACGACGAGCTCTTGGAGGACGC
CCAGTACCTCACCAAGGACTTCCAGGGCCAGGAGATCGGGTTCGAGAAGCACTTCCAGTTCGACA
AGTTGGTTGCCTGGGAGCTGATCATCGCCAAGTTCAACGATGACGGCGAGCTCGAGATCACCGTC
CCCCACACCGGGGTTGACTACCTCAAGGAGGTCAACTACGTGCCTATTGCCATCCAGGCGCTGTC
TCCCGTGCTCATTGCCGACGTCGAGGAAGCCGACGTTGACATGGACGAGGAGTAAACCTGCACCC
ACTTCACTTGCACTTAATGATAGAACGATATAATAATGTACTTTG
Found at i:624177 original size:33 final size:33
Alignment explanation
Indices: 624131--624222 Score: 139
Period size: 33 Copynumber: 2.8 Consensus size: 33
624121 CTCCGACTCC
*
624131 GACTCTGAGGACTCTGAGGACTCTGATTCCGAG
1 GACTCTGAGGACTCTGAGGACTCTGACTCCGAG
* * *
624164 GACTCTGACGACTCTGACGACTCCGACTCCGAG
1 GACTCTGAGGACTCTGAGGACTCTGACTCCGAG
*
624197 GACTCTGAGGATTCTGAGGACTCTGA
1 GACTCTGAGGACTCTGAGGACTCTGA
624223 GGACTCCGAC
Statistics
Matches: 51, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
33 51 1.00
ACGTcount: A:0.22, C:0.27, G:0.28, T:0.23
Consensus pattern (33 bp):
GACTCTGAGGACTCTGAGGACTCTGACTCCGAG
Left flanking sequence: Indices 623631 -- 624130
GCCAGTTCTTTGAGGACGAGATGGTGTCGCTGGACGAGATCTCCGACTCCGAGACCGAGTTTGAC
GCCGGCAACCCCGACCTGTACCAGTTCATTTGCGACAACTGCGAGGACGAGGAGGACGAGCTGAC
TGACGACGAGGGGCTCACCATCTACCGCCACGTTTTCGACCTCCCCGAGGACGAGGACGACCTGA
CCGACGAGGAGTTGATGGCCGAGGACTCTGACGACGAGCCTGACATCGTTGACTTGACCTCCGAC
TTGATCGACTCCAAGGACATCGAGGTGGAGGAGGGTGACGACCACTACAAGGTGACCATCCGCTT
GCCCTCGATTGACCAGGACGAGCTCAAGATCGACTTCAACAAGGCCGAGAACGAGTTGGTGGTGA
ACGGCAAGTTCGACTTCACCATCGACGACGGCGAGGACGACGAGATCGAGGCCGTGGTGACTTTG
GAGGAGCAGGACGACACCACTCCCGACTCGCTGGACTCCGACTCC
Right flanking sequence: Indices 624223 -- 624722
GGACTCCGACTCCGACTCTGATTCCGACCTGCTGGACTCGTCCGACTCCGAGGCGGAGGCTGAGG
AGGAGCAGCGGGCCATCATCGAGGCTGCCGAGGAGGCTGCCGAGGCCCTTGAGGACGACGACGAC
GAAGACTTTGTTGACGACGACGCTGCTGACGTCACCTGCGACATTGACGACGACGAGCTCTTGGA
GGACGCCCAGTACCTCACCAAGGACTTCCAGGGCCAGGAGATCGGGTTCGAGAAGCACTTCCAGT
TCGACAAGTTGGTTGCCTGGGAGCTGATCATCGCCAAGTTCAACGATGACGGCGAGCTCGAGATC
ACCGTCCCCCACACCGGGGTTGACTACCTCAAGGAGGTCAACTACGTGCCTATTGCCATCCAGGC
GCTGTCTCCCGTGCTCATTGCCGACGTCGAGGAAGCCGACGTTGACATGGACGAGGAGTAAACCT
GCACCCACTTCACTTGCACTTAATGATAGAACGATATAATAATGT
Found at i:624325 original size:12 final size:12
Alignment explanation
Indices: 624308--624332 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
624298 GGCCATCATC
624308 GAGGCTGCCGAG
1 GAGGCTGCCGAG
624320 GAGGCTGCCGAG
1 GAGGCTGCCGAG
624332 G
1 G
624333 CCCTTGAGGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.24, G:0.52, T:0.08
Consensus pattern (12 bp):
GAGGCTGCCGAG
Left flanking sequence: Indices 623808 -- 624307
AGGACGAGGACGACCTGACCGACGAGGAGTTGATGGCCGAGGACTCTGACGACGAGCCTGACATC
GTTGACTTGACCTCCGACTTGATCGACTCCAAGGACATCGAGGTGGAGGAGGGTGACGACCACTA
CAAGGTGACCATCCGCTTGCCCTCGATTGACCAGGACGAGCTCAAGATCGACTTCAACAAGGCCG
AGAACGAGTTGGTGGTGAACGGCAAGTTCGACTTCACCATCGACGACGGCGAGGACGACGAGATC
GAGGCCGTGGTGACTTTGGAGGAGCAGGACGACACCACTCCCGACTCGCTGGACTCCGACTCCGA
CTCTGAGGACTCTGAGGACTCTGATTCCGAGGACTCTGACGACTCTGACGACTCCGACTCCGAGG
ACTCTGAGGATTCTGAGGACTCTGAGGACTCCGACTCCGACTCTGATTCCGACCTGCTGGACTCG
TCCGACTCCGAGGCGGAGGCTGAGGAGGAGCAGCGGGCCATCATC
Right flanking sequence: Indices 624333 -- 624832
CCCTTGAGGACGACGACGACGAAGACTTTGTTGACGACGACGCTGCTGACGTCACCTGCGACATT
GACGACGACGAGCTCTTGGAGGACGCCCAGTACCTCACCAAGGACTTCCAGGGCCAGGAGATCGG
GTTCGAGAAGCACTTCCAGTTCGACAAGTTGGTTGCCTGGGAGCTGATCATCGCCAAGTTCAACG
ATGACGGCGAGCTCGAGATCACCGTCCCCCACACCGGGGTTGACTACCTCAAGGAGGTCAACTAC
GTGCCTATTGCCATCCAGGCGCTGTCTCCCGTGCTCATTGCCGACGTCGAGGAAGCCGACGTTGA
CATGGACGAGGAGTAAACCTGCACCCACTTCACTTGCACTTAATGATAGAACGATATAATAATGT
ACTTTGCTTTTTGGAAGGTTACGTGCAACGGCGTATGCAGCCACAGTAAGTGTTCAGCGGGACGA
TTAGTGTTCGACCCCTTACATGACGCTAGATTTATTGATTTGTTT
Found at i:624847 original size:19 final size:20
Alignment explanation
Indices: 624816--624864 Score: 82
Period size: 19 Copynumber: 2.5 Consensus size: 20
624806 CATGACGCTA
624816 GATTTATTGATTTGTTTGTT
1 GATTTATTGATTTGTTTGTT
624836 GATTTA-TGATTTGTTTGTT
1 GATTTATTGATTTGTTTGTT
*
624855 GATATATTGA
1 GATTTATTGA
624865 AGATTTGTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
19 18 0.67
20 9 0.33
ACGTcount: A:0.20, C:0.00, G:0.20, T:0.59
Consensus pattern (20 bp):
GATTTATTGATTTGTTTGTT
Left flanking sequence: Indices 624316 -- 624815
CGAGGAGGCTGCCGAGGCCCTTGAGGACGACGACGACGAAGACTTTGTTGACGACGACGCTGCTG
ACGTCACCTGCGACATTGACGACGACGAGCTCTTGGAGGACGCCCAGTACCTCACCAAGGACTTC
CAGGGCCAGGAGATCGGGTTCGAGAAGCACTTCCAGTTCGACAAGTTGGTTGCCTGGGAGCTGAT
CATCGCCAAGTTCAACGATGACGGCGAGCTCGAGATCACCGTCCCCCACACCGGGGTTGACTACC
TCAAGGAGGTCAACTACGTGCCTATTGCCATCCAGGCGCTGTCTCCCGTGCTCATTGCCGACGTC
GAGGAAGCCGACGTTGACATGGACGAGGAGTAAACCTGCACCCACTTCACTTGCACTTAATGATA
GAACGATATAATAATGTACTTTGCTTTTTGGAAGGTTACGTGCAACGGCGTATGCAGCCACAGTA
AGTGTTCAGCGGGACGATTAGTGTTCGACCCCTTACATGACGCTA
Right flanking sequence: Indices 624865 -- 625364
AGATTTGTTTACTGATTGATTTGATTACATACTTAATAATATTACCACAATGCGATTTGCAGCCA
TTAGTTACAGTAGGAGATGAGAAATTCGAGTGCCAAAACACTACAATGATACTTGATACGACACA
ATGAGGTATCTGCCTATGAAATCTATTCATGGACACCTTGGTCCTGCTTTCAATCTCTCGTCATT
CCCTTCCCCCCCCTTCCCTTCTCTCGTCATTCCCTTCCCCCCCTTCCCTTCTCCCACCCTTCCCT
TCTCCCACCTTACCTTCCTCTCGTCCTCCAAAAATTCCTTTGCTCACCACAAACCCCATGACCTC
CATCAACACCAGACAGGTTTACGCCGCCTTGGGCGCGGCGCTTGGGCGCAAACTCAACAACAACG
ACCCCTCGATGGTCGAGACCGTAAAGGTAATCGATTTGGACCAGCCAATCACCACCTTGGCCCTC
TTGCGGGCCCACTTGTTAAGAATTGTACTTGCAGCGGTGACCCCC
Found at i:625086 original size:31 final size:31
Alignment explanation
Indices: 625048--625149 Score: 125
Period size: 31 Copynumber: 3.3 Consensus size: 31
625038 CTGCTTTCAA
625048 TCTCTCGTCATTCCCTTCCCCCCCCTTCCCT
1 TCTCTCGTCATTCCCTTCCCCCCCCTTCCCT
625079 TCTCTCGTCATTCCCTT-CCCCCCCTTCCCT
1 TCTCTCGTCATTCCCTTCCCCCCCCTTCCCT
* ** * * * *
625109 TCTCCCACCCTTCCCTTCTCCCACCTTACCT
1 TCTCTCGTCATTCCCTTCCCCCCCCTTCCCT
625140 TCCTCTCGTC
1 T-CTCTCGTC
625150 CTCCAAAAAT
Statistics
Matches: 59, Mismatches: 10, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
30 26 0.44
31 28 0.47
32 5 0.08
ACGTcount: A:0.05, C:0.57, G:0.03, T:0.35
Consensus pattern (31 bp):
TCTCTCGTCATTCCCTTCCCCCCCCTTCCCT
Left flanking sequence: Indices 624548 -- 625047
ACCGTCCCCCACACCGGGGTTGACTACCTCAAGGAGGTCAACTACGTGCCTATTGCCATCCAGGC
GCTGTCTCCCGTGCTCATTGCCGACGTCGAGGAAGCCGACGTTGACATGGACGAGGAGTAAACCT
GCACCCACTTCACTTGCACTTAATGATAGAACGATATAATAATGTACTTTGCTTTTTGGAAGGTT
ACGTGCAACGGCGTATGCAGCCACAGTAAGTGTTCAGCGGGACGATTAGTGTTCGACCCCTTACA
TGACGCTAGATTTATTGATTTGTTTGTTGATTTATGATTTGTTTGTTGATATATTGAAGATTTGT
TTACTGATTGATTTGATTACATACTTAATAATATTACCACAATGCGATTTGCAGCCATTAGTTAC
AGTAGGAGATGAGAAATTCGAGTGCCAAAACACTACAATGATACTTGATACGACACAATGAGGTA
TCTGCCTATGAAATCTATTCATGGACACCTTGGTCCTGCTTTCAA
Right flanking sequence: Indices 625150 -- 625649
CTCCAAAAATTCCTTTGCTCACCACAAACCCCATGACCTCCATCAACACCAGACAGGTTTACGCC
GCCTTGGGCGCGGCGCTTGGGCGCAAACTCAACAACAACGACCCCTCGATGGTCGAGACCGTAAA
GGTAATCGATTTGGACCAGCCAATCACCACCTTGGCCCTCTTGCGGGCCCACTTGTTAAGAATTG
TACTTGCAGCGGTGACCCCCGTGGTGCTCGCGTGCCACTGGGTGGGCGCCAGCTTGGGCCACGGG
TGGTTCCTCTGCCAGATCTTCTGCTACGTGGTTCGCCAGCAGGCGGACTTGGCGCGCCAACGGCG
GGTTAGCGCCTGGTATGGCGGGTGGTGTCAGCTCAGCGCCCAGGCGCTGGCGGTGCCTACTGCGC
TCAGAGCCATGTGTGTGGTGGAGCCCCACGGGTTGCGCCACTACCAGCTCTCGTTGCCAATCACC
AATGTCTCTAGCTACGCCTACGTGGGGACAATTGCGCCCTACGGA
Found at i:625094 original size:16 final size:16
Alignment explanation
Indices: 625048--625096 Score: 55
Period size: 16 Copynumber: 3.1 Consensus size: 16
625038 CTGCTTTCAA
625048 TCTCTCGTCATTCCCT
1 TCTCTCGTCATTCCCT
* ** *
625064 TC-CCCCCCCTTCCCT
1 TCTCTCGTCATTCCCT
625079 TCTCTCGTCATTCCCT
1 TCTCTCGTCATTCCCT
625095 TC
1 TC
625097 CCCCCCTTCC
Statistics
Matches: 24, Mismatches: 8, Indels: 2
0.71 0.24 0.06
Matches are distributed among these distances:
15 11 0.46
16 13 0.54
ACGTcount: A:0.04, C:0.53, G:0.04, T:0.39
Consensus pattern (16 bp):
TCTCTCGTCATTCCCT
Left flanking sequence: Indices 624548 -- 625047
ACCGTCCCCCACACCGGGGTTGACTACCTCAAGGAGGTCAACTACGTGCCTATTGCCATCCAGGC
GCTGTCTCCCGTGCTCATTGCCGACGTCGAGGAAGCCGACGTTGACATGGACGAGGAGTAAACCT
GCACCCACTTCACTTGCACTTAATGATAGAACGATATAATAATGTACTTTGCTTTTTGGAAGGTT
ACGTGCAACGGCGTATGCAGCCACAGTAAGTGTTCAGCGGGACGATTAGTGTTCGACCCCTTACA
TGACGCTAGATTTATTGATTTGTTTGTTGATTTATGATTTGTTTGTTGATATATTGAAGATTTGT
TTACTGATTGATTTGATTACATACTTAATAATATTACCACAATGCGATTTGCAGCCATTAGTTAC
AGTAGGAGATGAGAAATTCGAGTGCCAAAACACTACAATGATACTTGATACGACACAATGAGGTA
TCTGCCTATGAAATCTATTCATGGACACCTTGGTCCTGCTTTCAA
Right flanking sequence: Indices 625097 -- 625596
CCCCCCTTCCCTTCTCCCACCCTTCCCTTCTCCCACCTTACCTTCCTCTCGTCCTCCAAAAATTC
CTTTGCTCACCACAAACCCCATGACCTCCATCAACACCAGACAGGTTTACGCCGCCTTGGGCGCG
GCGCTTGGGCGCAAACTCAACAACAACGACCCCTCGATGGTCGAGACCGTAAAGGTAATCGATTT
GGACCAGCCAATCACCACCTTGGCCCTCTTGCGGGCCCACTTGTTAAGAATTGTACTTGCAGCGG
TGACCCCCGTGGTGCTCGCGTGCCACTGGGTGGGCGCCAGCTTGGGCCACGGGTGGTTCCTCTGC
CAGATCTTCTGCTACGTGGTTCGCCAGCAGGCGGACTTGGCGCGCCAACGGCGGGTTAGCGCCTG
GTATGGCGGGTGGTGTCAGCTCAGCGCCCAGGCGCTGGCGGTGCCTACTGCGCTCAGAGCCATGT
GTGTGGTGGAGCCCCACGGGTTGCGCCACTACCAGCTCTCGTTGC
Found at i:625119 original size:25 final size:28
Alignment explanation
Indices: 625048--625123 Score: 86
Period size: 30 Copynumber: 2.6 Consensus size: 28
625038 CTGCTTTCAA
625048 TCTCTCGTCATTCCCTTCCCCCCCCTTCCCT
1 TCTCTCG-CA-TCCCTT-CCCCCCCTTCCCT
625079 TCTCTCGTCATTCCCTTCCCCCCCTTCCCT
1 TCTCTCG-CA-TCCCTTCCCCCCCTTCCCT
625109 TCTC-C-CA-CCCTTCCC
1 TCTCTCGCATCCCTTCCC
625124 TTCTCCCACC
Statistics
Matches: 45, Mismatches: 0, Indels: 6
0.88 0.00 0.12
Matches are distributed among these distances:
25 8 0.18
27 2 0.04
29 1 0.02
30 17 0.38
31 17 0.38
ACGTcount: A:0.04, C:0.59, G:0.03, T:0.34
Consensus pattern (28 bp):
TCTCTCGCATCCCTTCCCCCCCTTCCCT
Left flanking sequence: Indices 624548 -- 625047
ACCGTCCCCCACACCGGGGTTGACTACCTCAAGGAGGTCAACTACGTGCCTATTGCCATCCAGGC
GCTGTCTCCCGTGCTCATTGCCGACGTCGAGGAAGCCGACGTTGACATGGACGAGGAGTAAACCT
GCACCCACTTCACTTGCACTTAATGATAGAACGATATAATAATGTACTTTGCTTTTTGGAAGGTT
ACGTGCAACGGCGTATGCAGCCACAGTAAGTGTTCAGCGGGACGATTAGTGTTCGACCCCTTACA
TGACGCTAGATTTATTGATTTGTTTGTTGATTTATGATTTGTTTGTTGATATATTGAAGATTTGT
TTACTGATTGATTTGATTACATACTTAATAATATTACCACAATGCGATTTGCAGCCATTAGTTAC
AGTAGGAGATGAGAAATTCGAGTGCCAAAACACTACAATGATACTTGATACGACACAATGAGGTA
TCTGCCTATGAAATCTATTCATGGACACCTTGGTCCTGCTTTCAA
Right flanking sequence: Indices 625124 -- 625623
TTCTCCCACCTTACCTTCCTCTCGTCCTCCAAAAATTCCTTTGCTCACCACAAACCCCATGACCT
CCATCAACACCAGACAGGTTTACGCCGCCTTGGGCGCGGCGCTTGGGCGCAAACTCAACAACAAC
GACCCCTCGATGGTCGAGACCGTAAAGGTAATCGATTTGGACCAGCCAATCACCACCTTGGCCCT
CTTGCGGGCCCACTTGTTAAGAATTGTACTTGCAGCGGTGACCCCCGTGGTGCTCGCGTGCCACT
GGGTGGGCGCCAGCTTGGGCCACGGGTGGTTCCTCTGCCAGATCTTCTGCTACGTGGTTCGCCAG
CAGGCGGACTTGGCGCGCCAACGGCGGGTTAGCGCCTGGTATGGCGGGTGGTGTCAGCTCAGCGC
CCAGGCGCTGGCGGTGCCTACTGCGCTCAGAGCCATGTGTGTGGTGGAGCCCCACGGGTTGCGCC
ACTACCAGCTCTCGTTGCCAATCACCAATGTCTCTAGCTACGCCT
Found at i:625131 original size:16 final size:16
Alignment explanation
Indices: 625058--625133 Score: 86
Period size: 16 Copynumber: 4.9 Consensus size: 16
625048 TCTCTCGTCA
*
625058 TTCCCTTC-CCCCCCC
1 TTCCCTTCTCCCACCC
* ** *
625073 TTCCCTTCTCTCGTCA
1 TTCCCTTCTCCCACCC
625089 TTCCCTTC-CCC-CCC
1 TTCCCTTCTCCCACCC
625103 TTCCCTTCTCCCACCC
1 TTCCCTTCTCCCACCC
625119 TTCCCTTCTCCCACC
1 TTCCCTTCTCCCACC
625134 TTACCTTCCT
Statistics
Matches: 51, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
14 9 0.18
15 13 0.25
16 29 0.57
ACGTcount: A:0.04, C:0.62, G:0.01, T:0.33
Consensus pattern (16 bp):
TTCCCTTCTCCCACCC
Left flanking sequence: Indices 624558 -- 625057
ACACCGGGGTTGACTACCTCAAGGAGGTCAACTACGTGCCTATTGCCATCCAGGCGCTGTCTCCC
GTGCTCATTGCCGACGTCGAGGAAGCCGACGTTGACATGGACGAGGAGTAAACCTGCACCCACTT
CACTTGCACTTAATGATAGAACGATATAATAATGTACTTTGCTTTTTGGAAGGTTACGTGCAACG
GCGTATGCAGCCACAGTAAGTGTTCAGCGGGACGATTAGTGTTCGACCCCTTACATGACGCTAGA
TTTATTGATTTGTTTGTTGATTTATGATTTGTTTGTTGATATATTGAAGATTTGTTTACTGATTG
ATTTGATTACATACTTAATAATATTACCACAATGCGATTTGCAGCCATTAGTTACAGTAGGAGAT
GAGAAATTCGAGTGCCAAAACACTACAATGATACTTGATACGACACAATGAGGTATCTGCCTATG
AAATCTATTCATGGACACCTTGGTCCTGCTTTCAATCTCTCGTCA
Right flanking sequence: Indices 625134 -- 625633
TTACCTTCCTCTCGTCCTCCAAAAATTCCTTTGCTCACCACAAACCCCATGACCTCCATCAACAC
CAGACAGGTTTACGCCGCCTTGGGCGCGGCGCTTGGGCGCAAACTCAACAACAACGACCCCTCGA
TGGTCGAGACCGTAAAGGTAATCGATTTGGACCAGCCAATCACCACCTTGGCCCTCTTGCGGGCC
CACTTGTTAAGAATTGTACTTGCAGCGGTGACCCCCGTGGTGCTCGCGTGCCACTGGGTGGGCGC
CAGCTTGGGCCACGGGTGGTTCCTCTGCCAGATCTTCTGCTACGTGGTTCGCCAGCAGGCGGACT
TGGCGCGCCAACGGCGGGTTAGCGCCTGGTATGGCGGGTGGTGTCAGCTCAGCGCCCAGGCGCTG
GCGGTGCCTACTGCGCTCAGAGCCATGTGTGTGGTGGAGCCCCACGGGTTGCGCCACTACCAGCT
CTCGTTGCCAATCACCAATGTCTCTAGCTACGCCTACGTGGGGAC
Found at i:635604 original size:13 final size:13
Alignment explanation
Indices: 635586--635639 Score: 63
Period size: 13 Copynumber: 4.2 Consensus size: 13
635576 GTTGAAGTAG
635586 GGGATGAAGTGGT
1 GGGATGAAGTGGT
*
635599 GGGATGAAGTAGT
1 GGGATGAAGTGGT
* *
635612 GGGTTAAAGTGGT
1 GGGATGAAGTGGT
**
635625 GGCCTGAAGTGGT
1 GGGATGAAGTGGT
635638 GG
1 GG
635640 CCTGGTCGTG
Statistics
Matches: 34, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
13 34 1.00
ACGTcount: A:0.22, C:0.04, G:0.50, T:0.24
Consensus pattern (13 bp):
GGGATGAAGTGGT
Left flanking sequence: Indices 635086 -- 635585
CCACAGATCTCCCCGTGCAGCCAGCCGCACGGCCATCTCCGGCAACCCGACCACCCACGGGGGCA
CAATGGCTCGCACGGGTGGTCGTCTATTTTTGTCTCACATGGCACTCGCGTAAACCCGCATGACG
GGTCGAAGCCAGCCTGGGCCCGATTTGTCAGCCGGCCGCGGCTGCGTCAACCACATACGGCTTCC
AGGGTGCTTTTCCTGCTCGTCGCGTGCGCCTGCTTTCGGAAGTGGCGAGGTGGCGCCCGTTGCGC
GGTCCGATGCAACGGTGAAGGCCGGTGGGTGCGGTGGGAGGCAGGATTTGGTAGCGGTAGGCGTG
GGTTTCGGTGGTAAAGGGAGGACGGGGTGGTTTGGGGAGTGGTCACGGGGGTTTAGCGATGGGCG
GTGGTTTTGTGGTGCTTATCAGAGTCACCGTACCTTTATCTTCGTGCGTTTGCGTAGGTCTACAA
GTAGAATTGTAACGGTGTTTAGGCTGCAGTGACGGGTTGAAGTAG
Right flanking sequence: Indices 635640 -- 636139
CCTGGTCGTGTTGGCTCGCAATGGTAGGCTCGCAGTGGCGTCTCTGGCTCCGCGACCTTGCTCCG
TCACCTCACATTCCGCTTATCACTGCGACATAGTAATTATGATAGGACCAGTAGACCAACAGAAA
CAGCCAAACCCACAATCCACACAACAAACCTAACCCATACAACACAACACAACCCACCCCACTAC
ATACACCACAATCCCCCACCACACAACCCCATCCCAACCCACACCACCCGTTCTCCCCTCTTTCT
CATCAAATGACGGCAGCGAAAAAAATCAATCCCCCTTTCAAAAAAAAAACACTCTATGGCGAAGC
TGATCTTTGGGTTGGGATTTAAGAAGGAGGGAACGCCCATGGACGACCTGGCGTCGGTTACGCTG
AACGAGCAGGCCTCGTCCGCCAAGTTCATGCCCAAGGGTCTCGCCACCCCGCAAGCAACCACCGC
GATTGCCCAGGACCTGTTTGCCTACGGGCTGACCACGGGGGCGGG
Found at i:635632 original size:26 final size:26
Alignment explanation
Indices: 635578--635639 Score: 72
Period size: 26 Copynumber: 2.4 Consensus size: 26
635568 AGTGACGGGT
* *
635578 TGAAGTAG-GGGATGAAGTGGTGGGA
1 TGAAGTAGTGGGATAAAGTGGTGGCA
* *
635603 TGAAGTAGTGGGTTAAAGTGGTGGCC
1 TGAAGTAGTGGGATAAAGTGGTGGCA
*
635629 TGAAGTGGTGG
1 TGAAGTAGTGG
635640 CCTGGTCGTG
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
25 8 0.26
26 23 0.74
ACGTcount: A:0.24, C:0.03, G:0.48, T:0.24
Consensus pattern (26 bp):
TGAAGTAGTGGGATAAAGTGGTGGCA
Left flanking sequence: Indices 635078 -- 635577
CCAACCGCCCACAGATCTCCCCGTGCAGCCAGCCGCACGGCCATCTCCGGCAACCCGACCACCCA
CGGGGGCACAATGGCTCGCACGGGTGGTCGTCTATTTTTGTCTCACATGGCACTCGCGTAAACCC
GCATGACGGGTCGAAGCCAGCCTGGGCCCGATTTGTCAGCCGGCCGCGGCTGCGTCAACCACATA
CGGCTTCCAGGGTGCTTTTCCTGCTCGTCGCGTGCGCCTGCTTTCGGAAGTGGCGAGGTGGCGCC
CGTTGCGCGGTCCGATGCAACGGTGAAGGCCGGTGGGTGCGGTGGGAGGCAGGATTTGGTAGCGG
TAGGCGTGGGTTTCGGTGGTAAAGGGAGGACGGGGTGGTTTGGGGAGTGGTCACGGGGGTTTAGC
GATGGGCGGTGGTTTTGTGGTGCTTATCAGAGTCACCGTACCTTTATCTTCGTGCGTTTGCGTAG
GTCTACAAGTAGAATTGTAACGGTGTTTAGGCTGCAGTGACGGGT
Right flanking sequence: Indices 635640 -- 636139
CCTGGTCGTGTTGGCTCGCAATGGTAGGCTCGCAGTGGCGTCTCTGGCTCCGCGACCTTGCTCCG
TCACCTCACATTCCGCTTATCACTGCGACATAGTAATTATGATAGGACCAGTAGACCAACAGAAA
CAGCCAAACCCACAATCCACACAACAAACCTAACCCATACAACACAACACAACCCACCCCACTAC
ATACACCACAATCCCCCACCACACAACCCCATCCCAACCCACACCACCCGTTCTCCCCTCTTTCT
CATCAAATGACGGCAGCGAAAAAAATCAATCCCCCTTTCAAAAAAAAAACACTCTATGGCGAAGC
TGATCTTTGGGTTGGGATTTAAGAAGGAGGGAACGCCCATGGACGACCTGGCGTCGGTTACGCTG
AACGAGCAGGCCTCGTCCGCCAAGTTCATGCCCAAGGGTCTCGCCACCCCGCAAGCAACCACCGC
GATTGCCCAGGACCTGTTTGCCTACGGGCTGACCACGGGGGCGGG
Found at i:638739 original size:10 final size:10
Alignment explanation
Indices: 638713--638754 Score: 59
Period size: 10 Copynumber: 4.2 Consensus size: 10
638703 CACCACAGCT
*
638713 CTACCATCCA
1 CTACCACCCA
638723 C-ATCCACCCA
1 CTA-CCACCCA
638733 CTACCACCCA
1 CTACCACCCA
638743 CTACCACCCA
1 CTACCACCCA
638753 CT
1 CT
638755 TCAACTCACA
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
9 1 0.03
10 27 0.93
11 1 0.03
ACGTcount: A:0.29, C:0.57, G:0.00, T:0.14
Consensus pattern (10 bp):
CTACCACCCA
Left flanking sequence: Indices 638213 -- 638712
ACGCATCCCATGGTGTGTTTTTGTGTTTTCTTCGTATATGCGGTCCAACAGGCTTCACCGGTGAT
TATGGTTAAAGTGGAATGCCTACCAAAAATGGTAATCAAGGCATTCGAAAACCGTTATAAGGTGA
AGTCACGAAAAATAAGTGTGATCAAATTTTTGATACAAGAATTGGCACTTGACAAATTCCCCTCG
CGTGTCTTTCCCGTGTTCTCACCGTCTCGCGATTATCGAGCTCATTAACCAACGCTATGGTGAGT
GGATTACCAAGCAAGATAATGATAATTAGGAAACAATACTCAACAATATGCATGGGGTTACCAGT
CGAATACCATAATGATGCTTTCCAACCGAACTACACGTTATTATGCCTTCAATGCACGCAGGCTT
CTCTCCACTCGCGTCAGTACGCGGTCACAATACGCACACTATATACCACCTAAATCCGGTAGTCA
AACCAAACACTAGTGAACCAAGCTAATTAAATACCCACCACAGCT
Right flanking sequence: Indices 638755 -- 639254
TCAACTCACAACCACCCCTCCATAGTCACCCCAAATCTCCCGCCCCACCCGTGCGGCTGTCGCGC
TTAAACCACCACCCACCACAACTTCACCACAACCTCACCAACCCTTCCCCACCAATCCTCCACAA
TGGCGCCTGGACGACCCCGAGGCCGGAAAAACATCCGGACCATCCAGAACCAGCAGCTCCAGGCA
CAGGCCGCGCGTGCCCAGCAGCAACAGCGCCCGAAAAACCCGGTGTTGGACCGCCCGCCCATGGT
GTACGCCAACCCGCAGTACGTGGTGCAAATCCCGGCCCCTGCGCCCCAGCCGAACCACCCGCGCA
TGAACGAGGAAACCAACGTGCCCGTCCACGACGAGGCCGACCTCATATCCTTCCGCCAGGACGCA
CAGGCCCGGTACATCGCCAACCACGAGTACCTCGAAAACTTGACGAAATCGATCCACACGAAGAA
CATCCGCGCTCCGCGGCTCTATCCCAAGGACTGGGTGCTCGAGCC
Found at i:638748 original size:30 final size:30
Alignment explanation
Indices: 638713--638771 Score: 73
Period size: 30 Copynumber: 2.0 Consensus size: 30
638703 CACCACAGCT
* * *
638713 CTACCATCCACATCCACCCACTACCACCCA
1 CTACCACCCACATCAACCCACAACCACCCA
* *
638743 CTACCACCCACTTCAACTCACAACCACCC
1 CTACCACCCACATCAACCCACAACCACCC
638772 CTCCATAGTC
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.31, C:0.56, G:0.00, T:0.14
Consensus pattern (30 bp):
CTACCACCCACATCAACCCACAACCACCCA
Left flanking sequence: Indices 638213 -- 638712
ACGCATCCCATGGTGTGTTTTTGTGTTTTCTTCGTATATGCGGTCCAACAGGCTTCACCGGTGAT
TATGGTTAAAGTGGAATGCCTACCAAAAATGGTAATCAAGGCATTCGAAAACCGTTATAAGGTGA
AGTCACGAAAAATAAGTGTGATCAAATTTTTGATACAAGAATTGGCACTTGACAAATTCCCCTCG
CGTGTCTTTCCCGTGTTCTCACCGTCTCGCGATTATCGAGCTCATTAACCAACGCTATGGTGAGT
GGATTACCAAGCAAGATAATGATAATTAGGAAACAATACTCAACAATATGCATGGGGTTACCAGT
CGAATACCATAATGATGCTTTCCAACCGAACTACACGTTATTATGCCTTCAATGCACGCAGGCTT
CTCTCCACTCGCGTCAGTACGCGGTCACAATACGCACACTATATACCACCTAAATCCGGTAGTCA
AACCAAACACTAGTGAACCAAGCTAATTAAATACCCACCACAGCT
Right flanking sequence: Indices 638772 -- 639271
CTCCATAGTCACCCCAAATCTCCCGCCCCACCCGTGCGGCTGTCGCGCTTAAACCACCACCCACC
ACAACTTCACCACAACCTCACCAACCCTTCCCCACCAATCCTCCACAATGGCGCCTGGACGACCC
CGAGGCCGGAAAAACATCCGGACCATCCAGAACCAGCAGCTCCAGGCACAGGCCGCGCGTGCCCA
GCAGCAACAGCGCCCGAAAAACCCGGTGTTGGACCGCCCGCCCATGGTGTACGCCAACCCGCAGT
ACGTGGTGCAAATCCCGGCCCCTGCGCCCCAGCCGAACCACCCGCGCATGAACGAGGAAACCAAC
GTGCCCGTCCACGACGAGGCCGACCTCATATCCTTCCGCCAGGACGCACAGGCCCGGTACATCGC
CAACCACGAGTACCTCGAAAACTTGACGAAATCGATCCACACGAAGAACATCCGCGCTCCGCGGC
TCTATCCCAAGGACTGGGTGCTCGAGCCCACCAAGATAGGCGCCC
Found at i:638768 original size:20 final size:20
Alignment explanation
Indices: 638720--638771 Score: 59
Period size: 20 Copynumber: 2.6 Consensus size: 20
638710 GCTCTACCAT
* *
638720 CCACATCCACCCACTACCAC
1 CCACAACCACCCACTACAAC
* *
638740 CCACTACCACCCACTTCAAC
1 CCACAACCACCCACTACAAC
*
638760 TCACAACCACCC
1 CCACAACCACCC
638772 CTCCATAGTC
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.31, C:0.58, G:0.00, T:0.12
Consensus pattern (20 bp):
CCACAACCACCCACTACAAC
Left flanking sequence: Indices 638220 -- 638719
CCATGGTGTGTTTTTGTGTTTTCTTCGTATATGCGGTCCAACAGGCTTCACCGGTGATTATGGTT
AAAGTGGAATGCCTACCAAAAATGGTAATCAAGGCATTCGAAAACCGTTATAAGGTGAAGTCACG
AAAAATAAGTGTGATCAAATTTTTGATACAAGAATTGGCACTTGACAAATTCCCCTCGCGTGTCT
TTCCCGTGTTCTCACCGTCTCGCGATTATCGAGCTCATTAACCAACGCTATGGTGAGTGGATTAC
CAAGCAAGATAATGATAATTAGGAAACAATACTCAACAATATGCATGGGGTTACCAGTCGAATAC
CATAATGATGCTTTCCAACCGAACTACACGTTATTATGCCTTCAATGCACGCAGGCTTCTCTCCA
CTCGCGTCAGTACGCGGTCACAATACGCACACTATATACCACCTAAATCCGGTAGTCAAACCAAA
CACTAGTGAACCAAGCTAATTAAATACCCACCACAGCTCTACCAT
Right flanking sequence: Indices 638772 -- 639271
CTCCATAGTCACCCCAAATCTCCCGCCCCACCCGTGCGGCTGTCGCGCTTAAACCACCACCCACC
ACAACTTCACCACAACCTCACCAACCCTTCCCCACCAATCCTCCACAATGGCGCCTGGACGACCC
CGAGGCCGGAAAAACATCCGGACCATCCAGAACCAGCAGCTCCAGGCACAGGCCGCGCGTGCCCA
GCAGCAACAGCGCCCGAAAAACCCGGTGTTGGACCGCCCGCCCATGGTGTACGCCAACCCGCAGT
ACGTGGTGCAAATCCCGGCCCCTGCGCCCCAGCCGAACCACCCGCGCATGAACGAGGAAACCAAC
GTGCCCGTCCACGACGAGGCCGACCTCATATCCTTCCGCCAGGACGCACAGGCCCGGTACATCGC
CAACCACGAGTACCTCGAAAACTTGACGAAATCGATCCACACGAAGAACATCCGCGCTCCGCGGC
TCTATCCCAAGGACTGGGTGCTCGAGCCCACCAAGATAGGCGCCC
Found at i:639774 original size:12 final size:12
Alignment explanation
Indices: 639735--639780 Score: 58
Period size: 15 Copynumber: 3.7 Consensus size: 12
639725 AAGGTGGTGG
639735 GGTGGTAG-GGT
1 GGTGGTAGAGGT
639746 GGTGGTAGAGCAAGT
1 GGTGGTAGAG---GT
639761 GGTGGTAGAGGT
1 GGTGGTAGAGGT
639773 GGTGGTAG
1 GGTGGTAG
639781 GTGATAGAGC
Statistics
Matches: 31, Mismatches: 0, Indels: 7
0.82 0.00 0.18
Matches are distributed among these distances:
11 8 0.26
12 11 0.35
15 12 0.39
ACGTcount: A:0.17, C:0.02, G:0.57, T:0.24
Consensus pattern (12 bp):
GGTGGTAGAGGT
Left flanking sequence: Indices 639235 -- 639734
AAGGACTGGGTGCTCGAGCCCACCAAGATAGGCGCCCGGGAGCCGGGATACGCGCTCGACGACCC
CGAGTACGTGTACCAGCGGGCCCAGACGGACCGGCTCGCGGAGGCGTCGGCTGAGGAGGTGGAGC
TGGTGCTCGCCGAGGTCGAGCGCGAGTACAAGCACAAGTTTGGCCGCGAGTACCGCGCGCTGGGG
GCACCGGTGCCCTACAGCCACCGGTTCGGGCCCGTGGACGAGGCTCCTGCCGACTACGACCCGGC
CAAGGTGGTGAAGGCGATGCCGGCGCCCCAGGCCAACGGCGGGGACTTGTTTGGCGGGTTTGGCG
ACGACAAGTACGGCGACGACATGTTCAAGGGCCAGGGCAACATGGAGATGGGCATGGGCGACTTG
ATCAACTTTGACGGGGAGATGGCCGGGTTTGACGACGCCGAGTTTTTGAACAACATCAACTAGGC
TGGGCCTGCTATGTATTATAATGAATTAATAAGAGAAGGTGGTGG
Right flanking sequence: Indices 639781 -- 640280
GTGATAGAGCCCAGTGGTGGAAGAGCCCAGTGTAGAGAGCTAGTATGGCTTGCTAAGACTTACTC
AGATTCACTCATGGTCAAGTGCGACCATTGAATAGTTGAACAAGGGTTCAAAGTAGATATCACGA
GTGGTTTGGAGTGTATTGGTTACCTTCTTCACGGTTACCGTCGGGTTGGGTCTTCAGTTACTTCT
GTCCATGGACCAATCGGAACACCTGGTAGTAGACTCAATCCTAAGCAAGCTCGTGGCTGAATACT
CCATCGCAGCCAGTTTCTACCAATTTTTAGTTACGTCAACGGTATGTGAGTGGTTATGCGTCTGA
CGATTCCCTCGGGTAAACTAGCAGCTTCGAAACTAGACCAGTGGTTACGGCTTGCCCTAAGGTCC
TCACTTCGAGTCCACTGAAGATGTATTTGTACACTGAAAGTCTTAGTTGCAACCTTTGGGGTTTA
ATGGCACCTATTACAGCTACCTGGGACCGTTGCATCGCTCTTCCT
Found at i:640714 original size:13 final size:13
Alignment explanation
Indices: 640696--640720 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
640686 AGGCACCAGT
640696 GACGGTTCACCAA
1 GACGGTTCACCAA
640709 GACGGTTCACCA
1 GACGGTTCACCA
640721 GCACAGTTCT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.28, C:0.32, G:0.24, T:0.16
Consensus pattern (13 bp):
GACGGTTCACCAA
Left flanking sequence: Indices 640196 -- 640695
TTTGTACACTGAAAGTCTTAGTTGCAACCTTTGGGGTTTAATGGCACCTATTACAGCTACCTGGG
ACCGTTGCATCGCTCTTCCTACCTTATCATGATTACCGTCGCACTCGGTTGCACTTGCACACACC
CACTCGGTTCTTTTGCACCTCAGTCACTCCCTCCGAGGAGGTACCACCGTGCAACACACCCAATA
ACACACTTCTCCGTAAACCAACCGCTTGAATTACCGCTTATACCTTAAACACGTCCTGCGCTTCC
ACCGTCCCTGCCAAGCTACCAGCGCGCCGCGTCCTATTTATAGAATGTCGTTTAAAATATGCCAC
CGAAGCGAATGTGTCAACAGCCAGTGGCTCCCATCTGGCTGATTACAATCGCGACGCGTCTCGGG
CGAATGGACGTGTCGTACCCACGCACCGCTGACATTGTCGGGGTCGTTCACGTGTAGCATCGGGT
GTCGGCCCACCGGATGGTGGTTGCAGTGAGGCTGAAGGCACCAGT
Right flanking sequence: Indices 640721 -- 641220
GCACAGTTCTAAAGGTTACAGTGCTCGTGCCGTCACCCGTGGGCCACGTCTACCGTCGCTTAGTA
CTACCGTTGCATAGCCCGCGGTCTTCGCCCACAGCCCTCGTCGTCTGCATTGGGTTGCGTTTCCG
CGTACATATTTCCGCAGTCGAACTAGGGTTGATCCGAGCACTGATCTGATGCTCGCGACACAAAC
CCATCGGTGTTATCGATACTATTCACGTAGCTGTTCGGTATCGTCGCCTATCTTCCTTCCTCCTA
CCCTTCTTCCCTGCCTCCTACCCTTCTTACCTCCTACCCTTCTTACCTGCTACCTTTTCCTTCAC
TGTTCTTTCCCACGCTTACCGCACTACCAAGCACCTACAAACACCACCTAAACGCATCTAAACAC
CCACCTAAACCCACCTATACACCCACCTAGCCAAAAAAGAAAACAAACCGCAAAACCCCACACAC
ACACACCATATAACCACACCATAACCACACCCTCAAACCCACTAC
Found at i:641015 original size:16 final size:16
Alignment explanation
Indices: 640994--641034 Score: 73
Period size: 16 Copynumber: 2.6 Consensus size: 16
640984 TTCTTCCCTG
640994 CCTCCTACCCTTCTTA
1 CCTCCTACCCTTCTTA
641010 CCTCCTACCCTTCTTA
1 CCTCCTACCCTTCTTA
*
641026 CCTGCTACC
1 CCTCCTACC
641035 TTTTCCTTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.12, C:0.51, G:0.02, T:0.34
Consensus pattern (16 bp):
CCTCCTACCCTTCTTA
Left flanking sequence: Indices 640494 -- 640993
TATAGAATGTCGTTTAAAATATGCCACCGAAGCGAATGTGTCAACAGCCAGTGGCTCCCATCTGG
CTGATTACAATCGCGACGCGTCTCGGGCGAATGGACGTGTCGTACCCACGCACCGCTGACATTGT
CGGGGTCGTTCACGTGTAGCATCGGGTGTCGGCCCACCGGATGGTGGTTGCAGTGAGGCTGAAGG
CACCAGTGACGGTTCACCAAGACGGTTCACCAGCACAGTTCTAAAGGTTACAGTGCTCGTGCCGT
CACCCGTGGGCCACGTCTACCGTCGCTTAGTACTACCGTTGCATAGCCCGCGGTCTTCGCCCACA
GCCCTCGTCGTCTGCATTGGGTTGCGTTTCCGCGTACATATTTCCGCAGTCGAACTAGGGTTGAT
CCGAGCACTGATCTGATGCTCGCGACACAAACCCATCGGTGTTATCGATACTATTCACGTAGCTG
TTCGGTATCGTCGCCTATCTTCCTTCCTCCTACCCTTCTTCCCTG
Right flanking sequence: Indices 641035 -- 641534
TTTTCCTTCACTGTTCTTTCCCACGCTTACCGCACTACCAAGCACCTACAAACACCACCTAAACG
CATCTAAACACCCACCTAAACCCACCTATACACCCACCTAGCCAAAAAAGAAAACAAACCGCAAA
ACCCCACACACACACACCATATAACCACACCATAACCACACCCTCAAACCCACTACTCTTCTCTA
CCCTTCCCCTACCCTTCCACTTCTCTCCTACCTTTCTTCACCACTATCACGCGCGTGAAAAAACC
AACAACAACACGACATGGAGGGGCGACCAGGGCCGCTGGACGAGGTGCGCCAGCGGATATTCAGC
CAGCCGCAGTTCCAGACGCGCGCCCGGCTCCGCCAGCAGAAGCTCCGTGTCACCTTCATCGGCTA
CATCATCGTGCTAGTGTTTCTAGCCATGGTGCAGTTTGTCGGGGTGGGGTTCTTCACCCTGGGGT
TTCTCTTGCGACGGGACGTGCTCCCCAACGTGGCCGAGGGGACCA
Found at i:641117 original size:22 final size:22
Alignment explanation
Indices: 641084--641139 Score: 78
Period size: 22 Copynumber: 2.6 Consensus size: 22
641074 AAGCACCTAC
* *
641084 AAACA-CCACCTAAACGCATCT
1 AAACACCCACCTAAACCCACCT
641105 AAACACCCACCTAAACCCACCT
1 AAACACCCACCTAAACCCACCT
*
641127 ATACACCCACCTA
1 AAACACCCACCTA
641140 GCCAAAAAAG
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
21 5 0.16
22 26 0.84
ACGTcount: A:0.41, C:0.45, G:0.02, T:0.12
Consensus pattern (22 bp):
AAACACCCACCTAAACCCACCT
Left flanking sequence: Indices 640584 -- 641083
GGCGAATGGACGTGTCGTACCCACGCACCGCTGACATTGTCGGGGTCGTTCACGTGTAGCATCGG
GTGTCGGCCCACCGGATGGTGGTTGCAGTGAGGCTGAAGGCACCAGTGACGGTTCACCAAGACGG
TTCACCAGCACAGTTCTAAAGGTTACAGTGCTCGTGCCGTCACCCGTGGGCCACGTCTACCGTCG
CTTAGTACTACCGTTGCATAGCCCGCGGTCTTCGCCCACAGCCCTCGTCGTCTGCATTGGGTTGC
GTTTCCGCGTACATATTTCCGCAGTCGAACTAGGGTTGATCCGAGCACTGATCTGATGCTCGCGA
CACAAACCCATCGGTGTTATCGATACTATTCACGTAGCTGTTCGGTATCGTCGCCTATCTTCCTT
CCTCCTACCCTTCTTCCCTGCCTCCTACCCTTCTTACCTCCTACCCTTCTTACCTGCTACCTTTT
CCTTCACTGTTCTTTCCCACGCTTACCGCACTACCAAGCACCTAC
Right flanking sequence: Indices 641140 -- 641639
GCCAAAAAAGAAAACAAACCGCAAAACCCCACACACACACACCATATAACCACACCATAACCACA
CCCTCAAACCCACTACTCTTCTCTACCCTTCCCCTACCCTTCCACTTCTCTCCTACCTTTCTTCA
CCACTATCACGCGCGTGAAAAAACCAACAACAACACGACATGGAGGGGCGACCAGGGCCGCTGGA
CGAGGTGCGCCAGCGGATATTCAGCCAGCCGCAGTTCCAGACGCGCGCCCGGCTCCGCCAGCAGA
AGCTCCGTGTCACCTTCATCGGCTACATCATCGTGCTAGTGTTTCTAGCCATGGTGCAGTTTGTC
GGGGTGGGGTTCTTCACCCTGGGGTTTCTCTTGCGACGGGACGTGCTCCCCAACGTGGCCGAGGG
GACCACCGACCCGGCGTATCTGAAGGCGGTGGTGCTCGTCATTGACGCTCTCCGCTTCGATTTCG
CCGTCCCCGTGCCCGAGCTGGCCCATCCCTACCACAACCTGCTCC
Found at i:641120 original size:12 final size:12
Alignment explanation
Indices: 641103--641139 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
641093 CTAAACGCAT
641103 CTAAACACCCAC
1 CTAAACACCCAC
641115 CT-AA-ACCCAC
1 CTAAACACCCAC
*
641125 CTATACACCCAC
1 CTAAACACCCAC
641137 CTA
1 CTA
641140 GCCAAAAAAG
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
10 8 0.36
11 3 0.14
12 11 0.50
ACGTcount: A:0.38, C:0.49, G:0.00, T:0.14
Consensus pattern (12 bp):
CTAAACACCCAC
Left flanking sequence: Indices 640603 -- 641102
CCCACGCACCGCTGACATTGTCGGGGTCGTTCACGTGTAGCATCGGGTGTCGGCCCACCGGATGG
TGGTTGCAGTGAGGCTGAAGGCACCAGTGACGGTTCACCAAGACGGTTCACCAGCACAGTTCTAA
AGGTTACAGTGCTCGTGCCGTCACCCGTGGGCCACGTCTACCGTCGCTTAGTACTACCGTTGCAT
AGCCCGCGGTCTTCGCCCACAGCCCTCGTCGTCTGCATTGGGTTGCGTTTCCGCGTACATATTTC
CGCAGTCGAACTAGGGTTGATCCGAGCACTGATCTGATGCTCGCGACACAAACCCATCGGTGTTA
TCGATACTATTCACGTAGCTGTTCGGTATCGTCGCCTATCTTCCTTCCTCCTACCCTTCTTCCCT
GCCTCCTACCCTTCTTACCTCCTACCCTTCTTACCTGCTACCTTTTCCTTCACTGTTCTTTCCCA
CGCTTACCGCACTACCAAGCACCTACAAACACCACCTAAACGCAT
Right flanking sequence: Indices 641140 -- 641639
GCCAAAAAAGAAAACAAACCGCAAAACCCCACACACACACACCATATAACCACACCATAACCACA
CCCTCAAACCCACTACTCTTCTCTACCCTTCCCCTACCCTTCCACTTCTCTCCTACCTTTCTTCA
CCACTATCACGCGCGTGAAAAAACCAACAACAACACGACATGGAGGGGCGACCAGGGCCGCTGGA
CGAGGTGCGCCAGCGGATATTCAGCCAGCCGCAGTTCCAGACGCGCGCCCGGCTCCGCCAGCAGA
AGCTCCGTGTCACCTTCATCGGCTACATCATCGTGCTAGTGTTTCTAGCCATGGTGCAGTTTGTC
GGGGTGGGGTTCTTCACCCTGGGGTTTCTCTTGCGACGGGACGTGCTCCCCAACGTGGCCGAGGG
GACCACCGACCCGGCGTATCTGAAGGCGGTGGTGCTCGTCATTGACGCTCTCCGCTTCGATTTCG
CCGTCCCCGTGCCCGAGCTGGCCCATCCCTACCACAACCTGCTCC
Found at i:644234 original size:18 final size:18
Alignment explanation
Indices: 644207--644257 Score: 93
Period size: 18 Copynumber: 2.8 Consensus size: 18
644197 CGAGTAGGTT
644207 AGCAGGGGTGGTGTGTAA
1 AGCAGGGGTGGTGTGTAA
*
644225 AGCAGAGGTGGTGTGTAA
1 AGCAGGGGTGGTGTGTAA
644243 AGCAGGGGTGGTGTG
1 AGCAGGGGTGGTGTG
644258 GTAGAACGTA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 31 1.00
ACGTcount: A:0.22, C:0.06, G:0.51, T:0.22
Consensus pattern (18 bp):
AGCAGGGGTGGTGTGTAA
Left flanking sequence: Indices 643707 -- 644206
TCTTGGGGTACCAGCACTTCTTTTCCACCGGGCACCAGGCCACCATTCCCCTGGTGCAGTGGGAG
GTTGGCTTTATCACCACCGAGACCATCTGGTTTCCGTTTACCCACTTGAACATTGTGCTCAACAC
GTTTGGGCTGTTTATCGTTGTGGCGTTGGCGGTGCCGCTCATCACCCTCTGGAAGATTCCCCCCA
CCAACAAGCCCATCACCGTGCTTTCGCAGATCATTACCAACGTCACCACCATGCTCACCTACCAG
TTGGTGATTCTGTTGCTGCTGCTTGTGTTTGCCGCGCACTTCCGCCGCCACTTGATGGTGTGGAA
GATCTTTGCGCCGCGGTTCATGTTGAGCGGGATGTTGTTGATTGTCATGAACTTGACGTTGGTGT
TGGTGACGTTGTGGTTTGGCACGGGCAAGGTGGTGACCCAGGTGAACCGGATATTTGGGAAATAG
CGATAGAAGGATCGAGTCATAGATAACATAGATAACGAGTAGGTT
Right flanking sequence: Indices 644258 -- 644757
GTAGAACGTAGTGTTCTGTTGGTTTGGCTAGATATTGGCTACTTTTGGTGGCTGCAAGTGATGCA
TAATGGCTGCAAATGCTGCAGTATGCATGGTGGAAATTGAAGGAGTAAAGTGGTGAAACGTGTAT
GTCTTCGGTGTGAGCGAGTTTGAATGCCCGGGAGTTTTTGTTTCTAAATTTTTTCGTGCTTGGGA
CGTGATGGAGAGGGAGGGTTGATACTAATATGTACCATTTACATCTACCCAATTTTAGAGGAATC
TTCCCCACGCAAAAGCGTTGGGGGGGTCTGGGGGGGCGCCGCCTGCGGCCCCCCCAGCTACCAAA
CAACCATTAACCCCTTTCTCCCACCGATTTTAATCTTTGTATCACTATTCTGAGTATTTTTCCAC
TCAGCATTAAACCTGCAAGCCATATCATTCAGTGATTCGACTTGATAAATAAGTATTTGGAACCA
TATTTGACTATCGAAGCCCTATTTGTATTATATGCTGTCTATAAA
Done.