Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: scaffold64
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 636599
ACGTcount: A:0.22, C:0.28, G:0.28, T:0.22
Warning! 1 characters in sequence are not A, C, G, or T
File 1 of 3
Found at i:1019 original size:11 final size:11
Alignment explanation
Indices: 989--1030 Score: 59
Period size: 11 Copynumber: 3.9 Consensus size: 11
979 CCACCCCTGT
*
989 GTCAAAGCACT
1 GTCAAAGCACC
*
1000 GTC-AGGCACC
1 GTCAAAGCACC
1010 GTCAAAGCACC
1 GTCAAAGCACC
1021 GTCAAAGCAC
1 GTCAAAGCAC
1031 ATTGGTGCAC
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
10 8 0.30
11 19 0.70
ACGTcount: A:0.33, C:0.33, G:0.21, T:0.12
Consensus pattern (11 bp):
GTCAAAGCACC
Left flanking sequence: Indices 489 -- 988
AAATGTAAGGGCAGGTTGACCCGACACACAGATAGTTCATAACACCCTTGCTATCCGGGATGGAT
TGGGCCGCCTCTGTAGCCCCGTGGTTTTGACACCGGGCCGAAATAGGCATGCGAGTGCGCAGGCG
GGTACGCTTGGCGTTTTGTCTGAGACTCACAGAGCGAGACCACCGCAAATTCCGGGGGGGTGCCA
GCGACGCGTCGTGGCCACGCCAACGGCTAGCGAGCCGGCGTCATGTCGACCGTCCCGATCAGACA
GATCTGAACATAGCCGACAAGTAACTTGTAGCGGTATAATATGGGGCAAACAATACCCCCAGTTT
CACTGTTCGTGTATTTACACCGTGGCCTAATCAAGCCCGGGTGGTCGTGAGCACGGGTGGCTGCC
GTGTCATGGTGTGGTATTGTGGTCATTCTTTAGAGTCGAATCTATACATTGGGTTTCGATTAGCA
TGAACGTCAATAGTAAGGGGCTGACGTGCCAGGGTCCACCCCTGT
Right flanking sequence: Indices 1031 -- 1530
ATTGGTGCACAGTGAAGTACCGAAGGTTCAGGTACAGGGCCATCAGGCTTCTGTGTCACCTGCCA
AGGCACCTGCCAAGGCACTACAGTGGTGGCCCAAAGCTATCCGTCATATCCTTAAGCAACTGAAC
CGCCCACAAATGCAACTTGATATAGATCTGGTTGTCGCCTGTCATCTCAATCAAACTTTTGGGCC
GAATAATCAGCCGACGGAGGTACCGTTCGTGGTCCATCATCGTTGTTAGCTTGGTTTTAGCCTCG
CTATGGAGCCGCAGCTGGATCACAGTGATAACTTCATTGAAGTAGAGCAGTACCACGTTCCAATG
CATGAGAAGCGCCGCTTCGTTCTCGCCCACGATCATCACCGCGTACTTGCGCTCGCCGCCACGCG
CGTTGATGTCCTTGATCTTGAAGATCTTGAAAATGCAGTAGCCCAGCACGGCATCGCCGTAAAAC
ATGGGTTTAGTGATGTCGCTGGTTGTCTCGCACGAGAGCGCCTTG
Found at i:1104 original size:12 final size:12
Alignment explanation
Indices: 1087--1113 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
1077 GCTTCTGTGT
1087 CACCTGCCAAGG
1 CACCTGCCAAGG
1099 CACCTGCCAAGG
1 CACCTGCCAAGG
1111 CAC
1 CAC
1114 TACAGTGGTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.26, C:0.44, G:0.22, T:0.07
Consensus pattern (12 bp):
CACCTGCCAAGG
Left flanking sequence: Indices 587 -- 1086
CGGGCCGAAATAGGCATGCGAGTGCGCAGGCGGGTACGCTTGGCGTTTTGTCTGAGACTCACAGA
GCGAGACCACCGCAAATTCCGGGGGGGTGCCAGCGACGCGTCGTGGCCACGCCAACGGCTAGCGA
GCCGGCGTCATGTCGACCGTCCCGATCAGACAGATCTGAACATAGCCGACAAGTAACTTGTAGCG
GTATAATATGGGGCAAACAATACCCCCAGTTTCACTGTTCGTGTATTTACACCGTGGCCTAATCA
AGCCCGGGTGGTCGTGAGCACGGGTGGCTGCCGTGTCATGGTGTGGTATTGTGGTCATTCTTTAG
AGTCGAATCTATACATTGGGTTTCGATTAGCATGAACGTCAATAGTAAGGGGCTGACGTGCCAGG
GTCCACCCCTGTGTCAAAGCACTGTCAGGCACCGTCAAAGCACCGTCAAAGCACATTGGTGCACA
GTGAAGTACCGAAGGTTCAGGTACAGGGCCATCAGGCTTCTGTGT
Right flanking sequence: Indices 1114 -- 1613
TACAGTGGTGGCCCAAAGCTATCCGTCATATCCTTAAGCAACTGAACCGCCCACAAATGCAACTT
GATATAGATCTGGTTGTCGCCTGTCATCTCAATCAAACTTTTGGGCCGAATAATCAGCCGACGGA
GGTACCGTTCGTGGTCCATCATCGTTGTTAGCTTGGTTTTAGCCTCGCTATGGAGCCGCAGCTGG
ATCACAGTGATAACTTCATTGAAGTAGAGCAGTACCACGTTCCAATGCATGAGAAGCGCCGCTTC
GTTCTCGCCCACGATCATCACCGCGTACTTGCGCTCGCCGCCACGCGCGTTGATGTCCTTGATCT
TGAAGATCTTGAAAATGCAGTAGCCCAGCACGGCATCGCCGTAAAACATGGGTTTAGTGATGTCG
CTGGTTGTCTCGCACGAGAGCGCCTTGAGCGCGAGCTTCGTGAGCACGGTGTAACGTTTCTGGTT
GCGTGGGTACTGGGCCAGCACGTACACCAAGTCGCCTTCGGATGT
Found at i:6698 original size:12 final size:12
Alignment explanation
Indices: 6677--6709 Score: 57
Period size: 12 Copynumber: 2.8 Consensus size: 12
6667 ACCCAGACTT
6677 TGCACCTCCCTA
1 TGCACCTCCCTA
*
6689 TGCACTTCCCTA
1 TGCACCTCCCTA
6701 TGCACCTCC
1 TGCACCTCC
6710 GTTTGCCTCC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.15, C:0.48, G:0.09, T:0.27
Consensus pattern (12 bp):
TGCACCTCCCTA
Left flanking sequence: Indices 6177 -- 6676
CTTTCATCGCTGGTGTCGCCGTGGGACCCCGCAGCCACCAGTGTGCTGTGGCTGCCATCGCCACC
GGAGCTGCTTGGCCTGATGGACGAGCTCGAGATGCTGCCCAAAATCGAAGCGTGCCAATATGAGC
CCCATTCCGACTATACCCCGTTTGAGCAGGACACTCCCGAACTCTACCGGGTGGTGCTGCCTACC
TTTGGCACCAACCACCGTAGACACCCGTTGTACCCGTTTGTCGCCCACGAGACGCCCCAGCTGGC
TGCCAGCTACCCCGAGCTGGCGATGGACCTGATCGACGACGACCCGCTTCCGCTGCTTGTGCTGG
TGGAGGAAGTGGAGGTGGTGGAGCAGCAGCACGCCCGCAGAGTGTCGCAGCCAGTGCAGCTCGTG
GAGGTGCCTACGCCGGACGTCAGCTCCCACGGGTACGGCACTGACCCGCTGCCCATGGTGGGCTA
CTACCCGCGAGCCTCACCGGCTCCGTGTTTGCTGGACCCAGACTT
Right flanking sequence: Indices 6710 -- 7209
GTTTGCCTCCTCGCGGTTCGACACCGTACTGGTGCTGATGTCGTCGCCCGACATCAGCGACGACG
ACCTCGACGGGTTCAGCGGGTCCGATGTGCCCGACTCGCTCATGGAAACGCCACCTGCGCCCTCG
GGTCACCGCCGTGCGTTGCTGCTGCCCACCACCGAGGTGTCGTTTGAGCGGATTTTGGGCCTGGT
GCTGTCGCTGCCCAAGCAGAGGCTCCACCTGGCGCGGTTGCGGGCTAACCACGCTATGCTCAAGG
CCGTTCCACGGTCGGTGTCCGACCTGGGCCCCACCATTGCCCTGATGATGGACCTGTTGGCCGAG
GACTATCATTACCTCTCGTTGCAGCTGCTGCTGGCGGAGTGGGAGGCCAACCACTTGAAGGTGGC
CCTGAAGCTACAGCTCCACGCGCTAGACACGTTGGCTACCCGCAGCCGCGACTTGGAGGGCCGGG
TGGACCGGTTGCACCAGCGGGTAAAGTTGTTAAAGGCGGCGCACG
Found at i:9980 original size:15 final size:15
Alignment explanation
Indices: 9960--9992 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
9950 GTTAAAGTCG
*
9960 TCAAAGTCGTCGTCA
1 TCAAAGTCGTCATCA
9975 TCAAAGTCGTCATCA
1 TCAAAGTCGTCATCA
9990 TCA
1 TCA
9993 TCGTCTTCGG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.27
Consensus pattern (15 bp):
TCAAAGTCGTCATCA
Left flanking sequence: Indices 9460 -- 9959
CGTGGGTCTGCTCGATTCGCTGCTTGATGATCAGCGGACCCAAATTGAGGGCTTCGAGAGGGGGG
ATCGGGAGACCGTGCCAGTCGATGTTGGCCGACACCACCGAGGGACGACGGCCGCGCTCTACAAG
TGAGGGAGCTCCCTCGGTGTGCTCGGGTGCTGCGGCCGTGCTCGTCTCATCGAGGTCAATGGGGA
TGCCTAGCTTGATGAGGAGGTTGTGGCGAATGTTCAGCCGGATCCAGTTCGGAGGCTGGAGACGC
GGGATCCGCGATACCTCCTGGTACACCTGGGACGATCGCTCATCGAGAAGCGACGGCGCATCATC
GCTGGGCTCCGCGTGGTCGGCCACGTCGTCGAAAACGGGACCAAGAACCTCGTCAACCTTGGCTC
TGAACTCGTCAGCGTTCTGAAACAACAGCAGGGGGAAAAGACCAGGGGCCAGCGTGGTCGGTGGT
GCCACGTACTCGGGTTCGGGGGCCCCTTGAAACTCGTTAAAGTCG
Right flanking sequence: Indices 9993 -- 10492
TCGTCTTCGGGCGGAGGGGTGATTGTGTCGTTCGCAAGATTCTCCTCGAGGGTCTCGATGGTTCC
CTCAATGTTCTTGGGAGGAGCATCGTTGACCGCGTGCTCGAAAGTTTCCTCGATGGTCTCGGGTT
GGGTTTCCTCTGGTAGAGGCTCATTGGAGCCCGTGGGCTGATTGTCAGACTCGGTTTGTTCTTCT
TTCTTCAGTTCCTTCTCTGTTGACTCCTCAATTGTGTTGGAGCTCTCGGGCTCCTCAGTCTCCTT
GTCTAGGCTCTTTTCAGACCCAGGGACCGGTTCCGGCTCGTTTTCCGGGGTCTCTTCCGCCAAAG
CAGCCGCTTCTTCCGCAGTGTCCACGTCAGCCATGGGTATATCGGTTATTCCAGCCGCCTCCTCG
TTCGACTCCGTCTTTTCCAATGCCAACGCCTCCACTCCCTCGACGATTCCGGGCGCCAGACTCAC
GGAGACCGCGGGGCCGGCTTCTCCCAGCGACTTTTCATCATCCAC
Found at i:12408 original size:14 final size:14
Alignment explanation
Indices: 12389--12419 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
12379 AGCACAAAGG
12389 AACACAGCCTATGA
1 AACACAGCCTATGA
*
12403 AACACATCCTATGA
1 AACACAGCCTATGA
12417 AAC
1 AAC
12420 CCCAGTAGCC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.45, C:0.29, G:0.10, T:0.16
Consensus pattern (14 bp):
AACACAGCCTATGA
Left flanking sequence: Indices 11889 -- 12388
TCACCACGCAAGTGACCCGGCCCCCTCGCTTGTGCGTGGCCACAGTGTCAGTAGTGACGTGAAGA
TCAGACGAGGAAATTATAGGGATAGCCGAAAGTATATATAGGTGGCCACAGCGGCGATCACCTAA
CCATGAAGTCACTACTCTGGGGCAAGAAGATCGACCTGAGGGTCGAGTGCACCCACGAAACAACC
CATTTACGTACCGAGAACAACAAGCGGGAGTACAGCCACCGGTTTGAAAAGTACTTGGCCGAGAC
CTGGGCAAAAGAGAACAAGGACGACGAAGCACATGCGCTGGAGCCCGAAGCGGAAGTGGCGGTGT
CACGCAAGTCGTGGTTCCGGTTCAAGCCGAAAACAAAGCGGATCGGGCGGTGACGGGGTGTGGTG
GAGTGGTGAGTGGATATCTAGCATAGAGGGTATATGAATCTCGAGATTCATACAAAAATACACGA
AGTCAGAGGAACAAAGAAGAATGAATCCTAAGGAAAGCACAAAGG
Right flanking sequence: Indices 12420 -- 12919
CCCAGTAGCCAGGCCTAGCCCCTGGTTCTACGCCATCCACCTACCTCGATGTCATTGTCTCGTGT
ATTATGGGGAATGCATTGCTAAAAAATGGTGTTGCGGCGGTGGGTAATCTCGGTATACTTGTTGT
TGGCCGACTCCAACACCTCGTTGATGAACCCACGCACGGGCTCGTCGTCGTTTTGGCCGGGGTCC
TCGTCCTCGCTGTCGGAAGACGTGTTTGTGTCGGTGTCTTCGAAGTAGGACTCGTCCTTGGAGTC
GGACTCCGCGGTCTCCTGCCACGGGATCCCGCCCGTAGCCTCGATGTCGTCGTCGTCGTCGTACT
GCACCGCGTGGAACTGGAAGTCGGTGGCGGGGTCGACCCCGGGAAGCGGTAGCGAGCTCGTGATC
TTGGTCAGCATGCGACAGGCGGCGCGGCCACGGCCAATCGCCCGCTCAATGCTGAGCCGGTGGCT
CAAGAAGAGGATGCGTGGGTACATCGACCGCTCGCCCTTCATCAA
Found at i:23153 original size:23 final size:20
Alignment explanation
Indices: 23082--23147 Score: 100
Period size: 20 Copynumber: 3.4 Consensus size: 20
23072 CGAGTGAGGT
*
23082 GGAAGAAGAAAT-GTAG-AG
1 GGAAGAAGAAATGGAAGAAG
*
23100 GGAAGAAGAAATGGAAGGAG
1 GGAAGAAGAAATGGAAGAAG
23120 GGAAGAAGAAATGGAAGAAG
1 GGAAGAAGAAATGGAAGAAG
23140 GGAAGAAG
1 GGAAGAAG
23148 TTGAAAATGA
Statistics
Matches: 44, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
18 12 0.27
19 3 0.07
20 29 0.66
ACGTcount: A:0.52, C:0.00, G:0.42, T:0.06
Consensus pattern (20 bp):
GGAAGAAGAAATGGAAGAAG
Left flanking sequence: Indices 22582 -- 23081
AAATCGCATTTGGGTCTTGTTTCGCCGGAGCTCGTCGGCATCGTGGCTTGTCTGGCGGATGCGGG
TAAACTGAGCCGTCAAATCAATGCTGTGGGCCACGGTGCCTCGCAAAATGTCGGGTTTTTCACTG
AAACACCCCAAACACACCCGTCGGAGGGTGCCGTGGTTGGTGAAATTGCCACTGTCGTCAAGCCC
AGCGGCATACTTGCCGTGCTCGTTGCACACAAACTGGTGGCAACGCGCACACTCGACGCAGCCTC
CGTTGCGGGGAGTCATGCTCTTGTGGCACCCCGGGTAGCTGCATCCACGCTGGGGGGCTAGGGAC
AGCTCCAGCCCGGGGGAGAAAAGCGATCGCGGTAGCGGGCTCTTGGACGGAGACGTCATGCGCCG
CTCAACCGGAGTCAGAGGCTGCGCAAGCGTCTTGGTGCCCAAGACACGGTGGGACATGGTGTGGT
AGAGACGATAATGCACACGACTGAGGGCACATAACCGAGTGAGGT
Right flanking sequence: Indices 23148 -- 23647
TTGAAAATGAAGAACAGAAGAAACGTGGTAAAGGCGAACCAACTGAACGAGGGTTGAGAGTGGGT
CATAAGGAGTGAATCAACTATCAAACACATATTTTACTCTGAGTATTACAACGACTACAGAGCCC
ACTAGTCCAACCATGAGACAACACTCACACCTTTCTCATTATCTTATTGTTCTATGAATATATAT
GCCAGCCTGTGGTTAGTTCACCTTGACCACCACCACGGTGATGTCGTCCTCTTTGCCCCCCAAGT
AGCGCTGTCCCGTCAACTTCGACAACTCCTGGGCAAACGCCAGCGGGAAGTTGGGGTCCTTCAGC
ACCTTGACCACCTCCTGGACAAACGTCTTGGCGGTGTCCGCCAACAGCAGCGCCGGCTTATCCGT
CGGCGCCAACTGGTCGCGCAAAAACACCTCAATGTCCCCGGGCACAATGTTGTCGGTGACACCGT
CGGTGGCAAACATCACCACGTCCCCGCTCTGCAACTGCCATGTGT
Found at i:29006 original size:12 final size:12
Alignment explanation
Indices: 28989--29024 Score: 72
Period size: 12 Copynumber: 3.0 Consensus size: 12
28979 AGACCACTGT
28989 CTCGTTGAGATC
1 CTCGTTGAGATC
29001 CTCGTTGAGATC
1 CTCGTTGAGATC
29013 CTCGTTGAGATC
1 CTCGTTGAGATC
29025 GTGCTCTTTC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 24 1.00
ACGTcount: A:0.17, C:0.25, G:0.25, T:0.33
Consensus pattern (12 bp):
CTCGTTGAGATC
Left flanking sequence: Indices 28489 -- 28988
GGACTGGCTGGAGATGATGTTGGACATGTGGTGGGACCCCGCCATGTACGAACAAATGCACATGC
AGTGGGAGCACAAGGAGCAGGACGCATTGGAGACGTTGTACCGCAGCCAGCCGTGGATGCGCGAG
CGGATCGCGTTTTTGCCCCTCCGCAAGATCAACGCGTTTCCCCCGGGAGCGTGCTCCGAGCAGGC
TGACGACCCGCAGTTCTTTTACAAAAACTTTGACTTTGTCATCAACATGGCCGGCTGCGAGTACG
GCCGCGACTGCTGGAAGGAAATGGAGCACTACAAGGCGTTGCTGAAGAAACTCCACAAGCGGTGG
TGGAAGTGGTGGACGTAAGTTATAGACTAAATCAATGAAACGAGAAGAGGTAGCGGGGTATTTTG
GTGGCCATTTTGTCTGTGTGGCTTACGGCAAAACTACTCGGTTGTTTTCACCTGTAGTTTTCGGA
TTGACTCTGATTCATTGGTGATCAATTATTGTGGGAGACCACTGT
Right flanking sequence: Indices 29025 -- 29524
GTGCTCTTTCACTGTTAGTTCACAGTGTCAAGAAGGTTATGCAAATGCTTATACTAGTGACAGAA
ACGTTCTTCAATGCACGTCAAGGCCGTTCGCTCTTCTTACACGGAACTTTCGGGACCGTTCGTAA
TTGCCTCGAAATTGCGCTTTGGCTGCAAATTGCGCTTACGGTGTCCGAAAGTTTTACAATGGCCG
ACACTGCGTCCAAATTACCTGTATTATCCGTCCTCCGTGCAAACACGTTCGTGTTGCTATAGTTA
CATATCCAATCTTCATTTGTATCCCTTCCGCTCGTACTCCCGTTCGACCCACTGAATGATTTGTT
CGAACGTCACTGGGTGGTTGTCAAACGCCTTCTGAAGCTCTTCTATTTCATTGGCGTGAAGAGCT
AATAACGGGATTACCCGAACCATATCAAGCCGTGAAAGACACTCCCACCGGTCGAGAATGGCAGA
GCTGTCGGCGTAGTCGGCCGCGGTGTACACGTTTTCTGCTGTTTG
Found at i:31007 original size:12 final size:12
Alignment explanation
Indices: 30990--31015 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
30980 AATGTACCAG
30990 CAGCCGCCGCAA
1 CAGCCGCCGCAA
31002 CAGCCGCCGCAA
1 CAGCCGCCGCAA
31014 CA
1 CA
31016 ACCCCCGAGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.27, C:0.50, G:0.23, T:0.00
Consensus pattern (12 bp):
CAGCCGCCGCAA
Left flanking sequence: Indices 30490 -- 30989
AGTGTAGAACTGTCTAGTAAGGCCGCTACAAGACGCCAATTCCTCTCAAAACCCATCCAAACTCA
CACAACTCACACAAACACCCCACACAGCCACATCTCCGCCGCACCAACCCCGCCACCTCCCGCTC
TGTGCTCGCTATCCCCCACCCGCGTTACGAGCCCGCTTTGCGGCACGAATTTTTTTTCGCACGCG
CCAGGAACTCACGGTCTCACCCAAACAACCACCGTGGAGACGTTGAGCCAACCATGGATCTCGAC
GGGATGGGCGATAGCTTCTGGTTCAATGACAACGCGTTCCAGAACAGCGGCAACATGCCGCCCAA
CGGGTCTTCGGGCGGGGACGACTTCCTCAATCTCTTTGACCAGCTGCCTCTGGGAGCCGCGGGGG
GAATGTTGGACCAGGCACCCCAGGGGATAGCACCCCAGCAGACACAACAGCGGATGCAGGTGCCG
GTGCTGGCACCCCCGCAACAGTTTGTGAGCCCGCAAATGTACCAG
Right flanking sequence: Indices 31016 -- 31515
ACCCCCGAGACAAATGCCGCAACACATGCCACAGCAGATGCCCCAGCAGCCACCGCAGCAGCAGC
AGCAGCAGCAACAGCCGATGTTTGACTCGCAAAAGCAGGAGCAGTTCCAGCGGATGCGCCAGCAG
GTGTATCAGCAAAAGCTCCAGCAGCAACAGCTCCAGCAACAAGGACTGCCGGCACAGCAGCTGCC
GACGATGTCCCAGGGGGCCCCAGGCGGGATGACCCCGCAGCAGATGCTGATGATGCACCACGGGC
CCGGCCACCCGGACGCCCAGTCCCGTGCGGCCCTGCACCTGGCCCTGGGCACCCCGGTGATGGGC
AACCAGCAGGCACCCATGAACTTCAACATGGGCATGGGCAACGGGATGGGGTCGCCGATGATGCA
GCAGCAGCAGGGGTACCCGAACCAGGGGATGAACCAGCAGCAAATGAACCCCACCCAGATGAACC
AGGGCATGAACCAGGGGATGAACCAGGGCCAGCAGCACCAGGGCC
Found at i:31172 original size:15 final size:15
Alignment explanation
Indices: 31152--31183 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
31142 GCAGGTGTAT
31152 CAGCAAAAGCTCCAG
1 CAGCAAAAGCTCCAG
*
31167 CAGCAACAGCTCCAG
1 CAGCAAAAGCTCCAG
31182 CA
1 CA
31184 ACAAGGACTG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.38, C:0.38, G:0.19, T:0.06
Consensus pattern (15 bp):
CAGCAAAAGCTCCAG
Left flanking sequence: Indices 30652 -- 31151
CCGCTTTGCGGCACGAATTTTTTTTCGCACGCGCCAGGAACTCACGGTCTCACCCAAACAACCAC
CGTGGAGACGTTGAGCCAACCATGGATCTCGACGGGATGGGCGATAGCTTCTGGTTCAATGACAA
CGCGTTCCAGAACAGCGGCAACATGCCGCCCAACGGGTCTTCGGGCGGGGACGACTTCCTCAATC
TCTTTGACCAGCTGCCTCTGGGAGCCGCGGGGGGAATGTTGGACCAGGCACCCCAGGGGATAGCA
CCCCAGCAGACACAACAGCGGATGCAGGTGCCGGTGCTGGCACCCCCGCAACAGTTTGTGAGCCC
GCAAATGTACCAGCAGCCGCCGCAACAGCCGCCGCAACAACCCCCGAGACAAATGCCGCAACACA
TGCCACAGCAGATGCCCCAGCAGCCACCGCAGCAGCAGCAGCAGCAGCAACAGCCGATGTTTGAC
TCGCAAAAGCAGGAGCAGTTCCAGCGGATGCGCCAGCAGGTGTAT
Right flanking sequence: Indices 31184 -- 31683
ACAAGGACTGCCGGCACAGCAGCTGCCGACGATGTCCCAGGGGGCCCCAGGCGGGATGACCCCGC
AGCAGATGCTGATGATGCACCACGGGCCCGGCCACCCGGACGCCCAGTCCCGTGCGGCCCTGCAC
CTGGCCCTGGGCACCCCGGTGATGGGCAACCAGCAGGCACCCATGAACTTCAACATGGGCATGGG
CAACGGGATGGGGTCGCCGATGATGCAGCAGCAGCAGGGGTACCCGAACCAGGGGATGAACCAGC
AGCAAATGAACCCCACCCAGATGAACCAGGGCATGAACCAGGGGATGAACCAGGGCCAGCAGCAC
CAGGGCCAGATGAACCAGAACATGAACCAGATGAACCGCATGCGCCAGCAGCCGCCGCAGCCCAT
GCGCCAGATGAGCCAGCAGCAAATGCGCCAGCAAATGCCCAACCAAATGACGCCGCAAATGGGCC
AGACCCCCCAGGGAATGAACCAACAGTGGCAGCAGCCCATGATGC
Found at i:31481 original size:12 final size:12
Alignment explanation
Indices: 31464--31499 Score: 63
Period size: 12 Copynumber: 3.0 Consensus size: 12
31454 CCCCACCCAG
31464 ATGAACCAGGGC
1 ATGAACCAGGGC
*
31476 ATGAACCAGGGG
1 ATGAACCAGGGC
31488 ATGAACCAGGGC
1 ATGAACCAGGGC
31500 CAGCAGCACC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.33, C:0.22, G:0.36, T:0.08
Consensus pattern (12 bp):
ATGAACCAGGGC
Left flanking sequence: Indices 30964 -- 31463
AGTTTGTGAGCCCGCAAATGTACCAGCAGCCGCCGCAACAGCCGCCGCAACAACCCCCGAGACAA
ATGCCGCAACACATGCCACAGCAGATGCCCCAGCAGCCACCGCAGCAGCAGCAGCAGCAGCAACA
GCCGATGTTTGACTCGCAAAAGCAGGAGCAGTTCCAGCGGATGCGCCAGCAGGTGTATCAGCAAA
AGCTCCAGCAGCAACAGCTCCAGCAACAAGGACTGCCGGCACAGCAGCTGCCGACGATGTCCCAG
GGGGCCCCAGGCGGGATGACCCCGCAGCAGATGCTGATGATGCACCACGGGCCCGGCCACCCGGA
CGCCCAGTCCCGTGCGGCCCTGCACCTGGCCCTGGGCACCCCGGTGATGGGCAACCAGCAGGCAC
CCATGAACTTCAACATGGGCATGGGCAACGGGATGGGGTCGCCGATGATGCAGCAGCAGCAGGGG
TACCCGAACCAGGGGATGAACCAGCAGCAAATGAACCCCACCCAG
Right flanking sequence: Indices 31500 -- 31999
CAGCAGCACCAGGGCCAGATGAACCAGAACATGAACCAGATGAACCGCATGCGCCAGCAGCCGCC
GCAGCCCATGCGCCAGATGAGCCAGCAGCAAATGCGCCAGCAAATGCCCAACCAAATGACGCCGC
AAATGGGCCAGACCCCCCAGGGAATGAACCAACAGTGGCAGCAGCCCATGATGCAGCGCAACCAG
CCCACCCCGGGCGGCACCACCGGTGGCATGGGCGGGCAGGCGATGGGCCCGGGCTCCGCACCGGG
TCCCGGGCCCACTGCTCCGGGCTCGACACCCAGCTCGGCTCCGGGCACCAACGCGTCCCAGAACG
CCAAGGTCGACCTCCAGCGCAAGAAGGAGATCTTCCTCCGGGTGCTCCACGAGTTCCTGCAGCTG
CGCGGCAACCCGATTCCCCCCGTGGTGATCAACCAGAAGCCGTGCAACTTGTTCTACCTCCACTT
GATGGCCAACCGGTTTGGCGGCGCCCGCGAGCTCATGCCCTACAT
Found at i:31607 original size:12 final size:12
Alignment explanation
Indices: 31590--31640 Score: 52
Period size: 12 Copynumber: 4.2 Consensus size: 12
31580 GATGAGCCAG
31590 CAGCAAATGCGC
1 CAGCAAATGCGC
31602 CAGCAAATGC-C
1 CAGCAAATGCGC
*
31613 CAACCAAATGACGC
1 C-AGCAAATG-CGC
*
31627 C-GCAAATGGGC
1 CAGCAAATGCGC
31638 CAG
1 CAG
31641 ACCCCCCAGG
Statistics
Matches: 32, Mismatches: 3, Indels: 8
0.74 0.07 0.19
Matches are distributed among these distances:
11 5 0.16
12 24 0.75
13 1 0.03
14 2 0.06
ACGTcount: A:0.35, C:0.33, G:0.24, T:0.08
Consensus pattern (12 bp):
CAGCAAATGCGC
Left flanking sequence: Indices 31090 -- 31589
AACAGCCGATGTTTGACTCGCAAAAGCAGGAGCAGTTCCAGCGGATGCGCCAGCAGGTGTATCAG
CAAAAGCTCCAGCAGCAACAGCTCCAGCAACAAGGACTGCCGGCACAGCAGCTGCCGACGATGTC
CCAGGGGGCCCCAGGCGGGATGACCCCGCAGCAGATGCTGATGATGCACCACGGGCCCGGCCACC
CGGACGCCCAGTCCCGTGCGGCCCTGCACCTGGCCCTGGGCACCCCGGTGATGGGCAACCAGCAG
GCACCCATGAACTTCAACATGGGCATGGGCAACGGGATGGGGTCGCCGATGATGCAGCAGCAGCA
GGGGTACCCGAACCAGGGGATGAACCAGCAGCAAATGAACCCCACCCAGATGAACCAGGGCATGA
ACCAGGGGATGAACCAGGGCCAGCAGCACCAGGGCCAGATGAACCAGAACATGAACCAGATGAAC
CGCATGCGCCAGCAGCCGCCGCAGCCCATGCGCCAGATGAGCCAG
Right flanking sequence: Indices 31641 -- 32140
ACCCCCCAGGGAATGAACCAACAGTGGCAGCAGCCCATGATGCAGCGCAACCAGCCCACCCCGGG
CGGCACCACCGGTGGCATGGGCGGGCAGGCGATGGGCCCGGGCTCCGCACCGGGTCCCGGGCCCA
CTGCTCCGGGCTCGACACCCAGCTCGGCTCCGGGCACCAACGCGTCCCAGAACGCCAAGGTCGAC
CTCCAGCGCAAGAAGGAGATCTTCCTCCGGGTGCTCCACGAGTTCCTGCAGCTGCGCGGCAACCC
GATTCCCCCCGTGGTGATCAACCAGAAGCCGTGCAACTTGTTCTACCTCCACTTGATGGCCAACC
GGTTTGGCGGCGCCCGCGAGCTCATGCCCTACATCAACAACCCGCCGCAGAACCCGCAGCAGCCG
CTGCCATGGCTCATGATGGCAAAGCAGCTCGGGTTCCTCGACGGGCTCAACCTCCAGGACGCGCT
GGTGCGCCAGCAGATCGAGCGCGAGGTGCTGCTGGTGTACGTCAA
Found at i:32559 original size:21 final size:21
Alignment explanation
Indices: 32510--32560 Score: 68
Period size: 21 Copynumber: 2.4 Consensus size: 21
32500 CGAGCCAGCA
32510 GCCGGTGGCGGTGCCGTCGGC
1 GCCGGTGGCGGTGCCGTCGGC
*
32531 GCCCGTGGCGGTGCC-TCCGGC
1 GCCGGTGGCGGTGCCGT-CGGC
*
32552 TCCGGTGGC
1 GCCGGTGGC
32561 CGCTCCCAGA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
20 1 0.04
21 25 0.96
ACGTcount: A:0.00, C:0.37, G:0.47, T:0.16
Consensus pattern (21 bp):
GCCGGTGGCGGTGCCGTCGGC
Left flanking sequence: Indices 32010 -- 32509
CCGCAGAACCCGCAGCAGCCGCTGCCATGGCTCATGATGGCAAAGCAGCTCGGGTTCCTCGACGG
GCTCAACCTCCAGGACGCGCTGGTGCGCCAGCAGATCGAGCGCGAGGTGCTGCTGGTGTACGTCA
AGTACCTCTTGCCGTACGAGCAGGCCGCCCGCACCCCGGAGGGCGCCCGCGAGATCCAGCAGCGG
ATGACGTCAGCCACCCAGCAGGTGGCGGCCCGCGAGCGCCAGCGCCAGGGCCAGTTTGCCGGCCA
GTCGCCCGCAATGACGCCCGCGATGCACCGGCTGCCACAGCCGCTGCTGGCACCCACCCCACAAC
CGCCGCAGCGCAAACCGCTGCGGATGAGCAACCCGTCGCAGCAGGACTCGCCGGCGGTGCTGCCG
TACGTGCAGAACCAGTTGCTGCGGGCCAACCTGGTGGTGAACGCCCAGGCCACGCCGCAGCAGGC
GATGGCGCCCAACCCGATGGGCCAGTTCCGCCGCCCGAGCCAGCA
Right flanking sequence: Indices 32561 -- 33060
CGCTCCCAGACAACCGCTGGTGCCCGAGCCGTTGGCGGTGGCGCCGCCCGTGCCCGTCAAGCGCC
CGCGCGAGGTGGCGTTCGGGTCCGAGGACGACCAGGTGACGCTCTTGCGCAACTACAACCCCTAC
AAACGCACGGTGGAGTCGCACGGCGGGTTCCCGGTGCGCGAGCTCTCGCAGGTGGCGCTGGAGGT
GGAGATGACCAAGCCGGTGTACTTGTTTGCGCCGGAGTTGGGCACCATCAACGTCCACTCGCTCA
CGATGGGGCTCAAAAACTACCAGGGCACCGCGCTGAGCGAGACGGTGTGTGCGCTCAACACGTTG
CTCGTCACCACCTCGGACGCCAACTACCAGTTCCGCGTCGACGACGCTCCCGAGCTCGTGGACGC
GCTTGCGGGCACCGGGTTGGCGATCCTCGACACCCTTGCCCACGGGCAGGTGGTGTGGGCCAACC
AGCTGGAGCCCGCGGAGCACTTGGCCACCAACGACCCGGTGGACG
Found at i:36981 original size:12 final size:12
Alignment explanation
Indices: 36947--36995 Score: 64
Period size: 12 Copynumber: 4.1 Consensus size: 12
36937 ACTTGGGCTC
36947 GGTCTCGGCCTT
1 GGTCTCGGCCTT
36959 AGG-CTCGGCCTT
1 -GGTCTCGGCCTT
*
36971 GGTCTCAGCCTT
1 GGTCTCGGCCTT
*
36983 GGTCTCGGTCTT
1 GGTCTCGGCCTT
36995 G
1 G
36996 TCCTTGTTCA
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
11 2 0.06
12 28 0.88
13 2 0.06
ACGTcount: A:0.04, C:0.31, G:0.33, T:0.33
Consensus pattern (12 bp):
GGTCTCGGCCTT
Left flanking sequence: Indices 36447 -- 36946
GACGCAAAGACAATGTTCTTGCACCCCGCCACCTTGGCAGGAACACCCAACATCATGGCAGTCAG
CGGCAACACCGCAGTGCCACCGGGGACGTACAAACCAACATTCTCGATGGGCTTGGCAAAACGCG
AGCACTTGACACCAGGACAGGTCTCCACGGTCATCACCTCCTCCAGGGGAAGCTGGGCCGCGTGG
AACTTCTCGATGTTGGACATGGAAAGGTCAATGGCGTGCTTCATCTCCTCGGAGATCTGCATGAG
CTCAGGGGCGAAGGGGGCCCGGAGCACGGGCAGCTCGAGCTTGACGCCGTCAAACTTGGCGGTGA
GGTCGATGAGCGCCTGGTCGCCGTGCTCCTTCACCTGGTTGATGATGGGAAGCACAAGCTTCATG
ATGTCGGACGTCTTTTGCACGGGACGGGTCAAGGCACGGGTGATGTCGGCCTTGGGAGCCTTGTT
GTAGTCGATGATCTCGATGTGGTAAGGGTCCTGGGACTTGGGCTC
Right flanking sequence: Indices 36996 -- 37495
TCCTTGTTCAAGTACGCCTCCTTGGCGTCGCCCTTTCTTCTCGTCACCTTCATCGACTTGATGTC
CAAGTTGCGCTCGATGTCCGCCAACTTGACCCCGTGCTTGGTGCACCAGGTCATGACAAAGTAGA
TGAGGTCAGCAGCTTCCCACGCCACCTCGTTCTTGACTCCCTGCGAGCCAGCGTCCACGAGCTCG
TCAAGCTCCTCCTTGAGCTTGGCCACGAGCAACAGCAGGTCGTCAAACAACCGCTTGGTGTACGA
GCCCTCGGGAGCGTTCTCCACGCGGTGGGCCAACGTGGTGGCCAACTTCAGCATCCCGGTGCCCA
CAGCCTCCTTGGCGTGGGCCAACTGGCGGTCGCCAAAACAGGTGTAGTCGTTGTCGTTGTGGCAG
AACCCGAACCCGGTCTTGGGCTCGACAACAAACTTGACCACGTCGTCATCGCAGTCCTTGTCCAA
CCGCACAAGGGTCTGGGTGGCGCCCAGGGTGGCTCCCTTGTACCA
Found at i:43789 original size:16 final size:16
Alignment explanation
Indices: 43768--43800 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
43758 GCAGCACACT
43768 TCTGGTTGCTGGCTCG
1 TCTGGTTGCTGGCTCG
43784 TCTGGTTGCTGGCTCG
1 TCTGGTTGCTGGCTCG
43800 T
1 T
43801 TTCCTACTGT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.00, C:0.24, G:0.36, T:0.39
Consensus pattern (16 bp):
TCTGGTTGCTGGCTCG
Left flanking sequence: Indices 43268 -- 43767
GTTTTCACCAACTTCCTTTCGCGGCCTCCCCGTCCCACTGAGCGGACCTACTACCTCCCTACCAC
TTTGCACGTTACCACCATCAACAGCGTGCCTGTAGTCGAGATCCGACCAGTTCCGACCGTGATCG
CTGAAGGCGATCGCGAAGGCCGTCTCAACTACATGAAGACGCTTCTCGAATGGTGGTTCTAACCG
ACATTTTGGGTCCCGCTAATGTAGACTATATATTAACTTGTTTTGTTTTGTGACACCAAACACAA
TTAGTAGGAGATATGGCTTAGTTGGCTGTTTCAGGGAGAAAGTACGAGTTCGACTACGATGCTTT
CTAATCCCCGCGTGACTGCGTAGGTGTAAATAACAATGACACTTCGATGAAATCGTCGTCGTCCG
CATATTATCTCTGATACAGAATTCCGTGACGAGTTCTAAACGGACCGGATGTAGCCCGCTCTTTG
GCAAACCCAATCAACCACCAAAACTGACGTATTTCGCAGCACACT
Right flanking sequence: Indices 43801 -- 44300
TTCCTACTGTTTACTCAAATACCGTTGCAACGCCTATATACGACGCGTATGTGGGAACGACAGCC
GCCCCGTGTGCACCTGGCAACGGACGTGATGACCCTGAAAAGCAGCCGCAAAACCACCAGCTCTC
TGTGTTAGCACACAATCACAAAAGCCGCCCGCAATTCTCACCACCACCGCCCCCTCTCCCTACCA
CCCCGTTCCCTACTCGTCTAGCGGTTCCGCCGCGTGCCGTCCGTCAACCGTCCACCTGCAGGAAC
GCATATGTAATTTCCAGACCCACAATCACGACCACCCCATTCTCCTGAGCCACCCGCAGTAGATA
CTCGCCATGACCATCTCCGTGGTGGATAAGCCCACCCCGACGCTCTATCTCAGTGAGCGGGTGTT
CTACCTCCAGCTCGTGATCTGTCTTGTCATCGGGTCGACGCTGTTCTTGCTCTTTTGTGTGCTAC
GCCGCCGGTGGCCCCACATCTACGCAGTCCGGACCCTTCGCAAGA
Found at i:46664 original size:24 final size:24
Alignment explanation
Indices: 46613--46679 Score: 109
Period size: 24 Copynumber: 2.8 Consensus size: 24
46603 GAAAAAGCTC
* *
46613 CGGGTGAGCGAATGGGAAT-AAAG
1 CGGGTAAGCGAATAGGAATAAAAG
46636 CGGGTAAGCGAATAGGAATAAAAG
1 CGGGTAAGCGAATAGGAATAAAAG
46660 CGGGTAAGCGAATAGGAATA
1 CGGGTAAGCGAATAGGAATA
46680 TAGTTTGTGT
Statistics
Matches: 41, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
23 17 0.41
24 24 0.59
ACGTcount: A:0.40, C:0.09, G:0.37, T:0.13
Consensus pattern (24 bp):
CGGGTAAGCGAATAGGAATAAAAG
Left flanking sequence: Indices 46113 -- 46612
TCATTTTCCAGCTCTTTATGGTGGGCACGTTGGCGCTCTCGAACGCGTACTGGGCGCTGGTGGCG
TGTGTGCCGCTCGTGTTGGCGTCGTTGGTGGTGTTGTACAACTTTGAGCGCTACTACACCCCGCT
CATCGACTTCATTGCGCTTCGGGCGGTGCTCCTGCCCGGCGACTACGACGCCAAGTTCGCCAACG
ACGACGACGAGCTGCCGATCGACCAGTGCTCCGAGCTCGAGGAGGAGGTCGAGGAAGGCACTGCT
GACCAGCAGCCACGGCCCCGCAAGCGCCGCCAGCTGACGCTCGACGAGGAGCGCGAGCAGTGGAG
CGACTACACCTACCCCAACTTGACGGACCCGCTCAACGGGCCGTGGGTGGGGTTCGAGGGCGACT
ACATCTCGATGGTCGAGTACCACCACTCGCACGCGCACCACGACTTGGAGGACGCGGACGTGCTG
GTGCTCCTGACCACGGACACCGAGGTCATCATCAAGAAAAAGCTC
Right flanking sequence: Indices 46680 -- 47179
TAGTTTGTGTAGCTACAACTGGTCGGAAACGGGCCATGTGCGGCCATTATATTAATGAAACTAAT
GAAACAAATGAGGAACTCGTCCGAGAAATAAACTAGGCGTCGGGGAAGTTCACAAGCAGCGCCGA
AAAGTAGTCGGGCAGCTCGCCGGTGTCGTAGGCAAGCATCGGCGACAACCCGGGCAGCGCCGGCT
TCTTCTTTTTCGGTTTCGCCGCGCCCTTCAGTTTGCGCATGAGAGAAATCGCCAACAACTTCTCC
CGGCGGAGGTTTTTGTCGGCGACGTAGTCGGGTTTGGTCTCCAGGTAGTCGCACTCGATGCCAAA
CCGGAGACACAGCAGGCACTCGGGGCGGATCTCGTCGCACTTGAGGTGCTTGATGCGGCAGATCC
AGCACCCGTTCTTCAGCCGCGGCAACAACCGGCGCCGGGTGTGTTTTTTCGGTTTGGTGCCGTCG
GCCACCGCCTGGTTCACCAGGTTGCCCAACTCCAGCAGCGACGAG
Found at i:48796 original size:13 final size:15
Alignment explanation
Indices: 48778--48813 Score: 58
Period size: 13 Copynumber: 2.5 Consensus size: 15
48768 GTGGAGGTTC
48778 GAAGGTTGAAGG-T-
1 GAAGGTTGAAGGATG
48791 GAAGGTTGAAGGATG
1 GAAGGTTGAAGGATG
48806 GAAGGTTG
1 GAAGGTTG
48814 GAAAAGGTTG
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
13 12 0.57
14 1 0.05
15 8 0.38
ACGTcount: A:0.31, C:0.00, G:0.47, T:0.22
Consensus pattern (15 bp):
GAAGGTTGAAGGATG
Left flanking sequence: Indices 48278 -- 48777
GGGAGCGACTCCAACGACGCGGTGAGCTCGTACTCGGAGATGTTGTACATCAAGTCGGCCGGCGG
CTGGAACTCGCCAATCAAGTCCACCAGCAGCTGGTCGTCCAACTGGTACATGGCCAGCGCTGGGT
TCTGGAGCGAGCCCTGCGAGCCGTTGGCGTTGGAGAAGATCAGGTAGTGGCTCAGCTGCATCGAG
TAGTCGGGCTGGTCGGGCATGGGCTGGGTGGGCGAGTTCAGCGGCGACGGCTGGCGGTAGGGCAG
GCCCTGGCCCGCGATGCGTGGCGGCGGCTGCGGCTGGAACATCGCCAGGGTGTCGTAGTGGTACA
CCCGGTCGTTATAGGAGGCCATCAGGGTGTTGGCCTTAATGGTGGTGTCGTCGTCGATGGAGGCG
GGCGACGAGTTCATGGGTCCCAATGGACAGAGAGGAGGGGGAGGTGGTGGTGGAGAAAGGAAGGA
AGTGGTTCAAAGGAGTCTGGGTAGACCACAGGAGGGTGGAGGTTC
Right flanking sequence: Indices 48814 -- 49313
GAAAAGGTTGGAACCTGAAGGATAACCTGAAGGATGAACCTGAAGGATGGAACCTGAAGGATGAA
CCTGAGGGATGAACCTGAAGGATGAACCTGAGGGATGAACCTGAAGGATGGAACCTTAGGAAAGG
AAAAAAGGAAGGTAGTAAGAGTTACGGAGAACCTAGGGAGGACCTGAATGAACTGAAATCGAACA
AACTGAGCAGTTCACGAACTGAGTGGTTCACGAACTGAGCGGCTCGAAAAACTGGGCGGATACTG
ATAACCTGGGTACCTGGAAGTGCCTGGAACAAACGAATCAACCACTAACGGTGTCTAGGGAGACT
CGTGGAACAACACCTAAAAAACGGAACCCTGAAAAGAATGAACACCTAGATAACCGACGAAGTGG
ATCGGAACCGAGGGAGTGGAGGGAACCTGGAAGGGCGCACAATAAACCAAGAACGCTGACTTGGC
AACAACAACCAAAAACGCGTCAACTAACGGGTCAACTAACGGGGC
Found at i:48816 original size:8 final size:7
Alignment explanation
Indices: 48772--48813 Score: 50
Period size: 7 Copynumber: 5.9 Consensus size: 7
48762 AGGAGGGTGG
48772 AGGTTCGA
1 AGGTT-GA
48780 AGGTTGA
1 AGGTTGA
48787 AGG-TGA
1 AGGTTGA
48793 AGGTTGA
1 AGGTTGA
*
48800 AGGATGGA
1 AGG-TTGA
48808 AGGTTG
1 AGGTTG
48814 GAAAAGGTTG
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
6 6 0.20
7 13 0.43
8 11 0.37
ACGTcount: A:0.29, C:0.02, G:0.45, T:0.24
Consensus pattern (7 bp):
AGGTTGA
Left flanking sequence: Indices 48272 -- 48771
TGGGTGGGGAGCGACTCCAACGACGCGGTGAGCTCGTACTCGGAGATGTTGTACATCAAGTCGGC
CGGCGGCTGGAACTCGCCAATCAAGTCCACCAGCAGCTGGTCGTCCAACTGGTACATGGCCAGCG
CTGGGTTCTGGAGCGAGCCCTGCGAGCCGTTGGCGTTGGAGAAGATCAGGTAGTGGCTCAGCTGC
ATCGAGTAGTCGGGCTGGTCGGGCATGGGCTGGGTGGGCGAGTTCAGCGGCGACGGCTGGCGGTA
GGGCAGGCCCTGGCCCGCGATGCGTGGCGGCGGCTGCGGCTGGAACATCGCCAGGGTGTCGTAGT
GGTACACCCGGTCGTTATAGGAGGCCATCAGGGTGTTGGCCTTAATGGTGGTGTCGTCGTCGATG
GAGGCGGGCGACGAGTTCATGGGTCCCAATGGACAGAGAGGAGGGGGAGGTGGTGGTGGAGAAAG
GAAGGAAGTGGTTCAAAGGAGTCTGGGTAGACCACAGGAGGGTGG
Right flanking sequence: Indices 48814 -- 49313
GAAAAGGTTGGAACCTGAAGGATAACCTGAAGGATGAACCTGAAGGATGGAACCTGAAGGATGAA
CCTGAGGGATGAACCTGAAGGATGAACCTGAGGGATGAACCTGAAGGATGGAACCTTAGGAAAGG
AAAAAAGGAAGGTAGTAAGAGTTACGGAGAACCTAGGGAGGACCTGAATGAACTGAAATCGAACA
AACTGAGCAGTTCACGAACTGAGTGGTTCACGAACTGAGCGGCTCGAAAAACTGGGCGGATACTG
ATAACCTGGGTACCTGGAAGTGCCTGGAACAAACGAATCAACCACTAACGGTGTCTAGGGAGACT
CGTGGAACAACACCTAAAAAACGGAACCCTGAAAAGAATGAACACCTAGATAACCGACGAAGTGG
ATCGGAACCGAGGGAGTGGAGGGAACCTGGAAGGGCGCACAATAAACCAAGAACGCTGACTTGGC
AACAACAACCAAAAACGCGTCAACTAACGGGTCAACTAACGGGGC
Found at i:48939 original size:13 final size:13
Alignment explanation
Indices: 48824--48934 Score: 179
Period size: 13 Copynumber: 8.5 Consensus size: 13
48814 GAAAAGGTTG
48824 GAACCTGAAGGAT
1 GAACCTGAAGGAT
48837 -AACCTGAAGGAT
1 GAACCTGAAGGAT
48849 GAACCTGAAGGAT
1 GAACCTGAAGGAT
48862 GGAACCTGAAGGAT
1 -GAACCTGAAGGAT
*
48876 GAACCTGAGGGAT
1 GAACCTGAAGGAT
48889 GAACCTGAAGGAT
1 GAACCTGAAGGAT
*
48902 GAACCTGAGGGAT
1 GAACCTGAAGGAT
48915 GAACCTGAAGGAT
1 GAACCTGAAGGAT
48928 GGAACCT
1 -GAACCT
48935 TAGGAAAGGA
Statistics
Matches: 91, Mismatches: 4, Indels: 5
0.91 0.04 0.05
Matches are distributed among these distances:
12 12 0.13
13 60 0.66
14 19 0.21
ACGTcount: A:0.36, C:0.16, G:0.32, T:0.15
Consensus pattern (13 bp):
GAACCTGAAGGAT
Left flanking sequence: Indices 48324 -- 48823
ACATCAAGTCGGCCGGCGGCTGGAACTCGCCAATCAAGTCCACCAGCAGCTGGTCGTCCAACTGG
TACATGGCCAGCGCTGGGTTCTGGAGCGAGCCCTGCGAGCCGTTGGCGTTGGAGAAGATCAGGTA
GTGGCTCAGCTGCATCGAGTAGTCGGGCTGGTCGGGCATGGGCTGGGTGGGCGAGTTCAGCGGCG
ACGGCTGGCGGTAGGGCAGGCCCTGGCCCGCGATGCGTGGCGGCGGCTGCGGCTGGAACATCGCC
AGGGTGTCGTAGTGGTACACCCGGTCGTTATAGGAGGCCATCAGGGTGTTGGCCTTAATGGTGGT
GTCGTCGTCGATGGAGGCGGGCGACGAGTTCATGGGTCCCAATGGACAGAGAGGAGGGGGAGGTG
GTGGTGGAGAAAGGAAGGAAGTGGTTCAAAGGAGTCTGGGTAGACCACAGGAGGGTGGAGGTTCG
AAGGTTGAAGGTGAAGGTTGAAGGATGGAAGGTTGGAAAAGGTTG
Right flanking sequence: Indices 48935 -- 49434
TAGGAAAGGAAAAAAGGAAGGTAGTAAGAGTTACGGAGAACCTAGGGAGGACCTGAATGAACTGA
AATCGAACAAACTGAGCAGTTCACGAACTGAGTGGTTCACGAACTGAGCGGCTCGAAAAACTGGG
CGGATACTGATAACCTGGGTACCTGGAAGTGCCTGGAACAAACGAATCAACCACTAACGGTGTCT
AGGGAGACTCGTGGAACAACACCTAAAAAACGGAACCCTGAAAAGAATGAACACCTAGATAACCG
ACGAAGTGGATCGGAACCGAGGGAGTGGAGGGAACCTGGAAGGGCGCACAATAAACCAAGAACGC
TGACTTGGCAACAACAACCAAAAACGCGTCAACTAACGGGTCAACTAACGGGGCTCAACGGAGCA
GGGGCTTCAACAAGTCGGAGACTGCTGGGTCAGACCACGGATAGGGGGTTGCAGGGGTTGCAACA
ACGACGGGTCCGGTGGAACAAGGGGATCAGCCACGGGACGGCTTG
Found at i:49030 original size:16 final size:16
Alignment explanation
Indices: 49009--49048 Score: 62
Period size: 16 Copynumber: 2.5 Consensus size: 16
48999 AAATCGAACA
49009 AACTGAGCAGTTCACG
1 AACTGAGCAGTTCACG
**
49025 AACTGAGTGGTTCACG
1 AACTGAGCAGTTCACG
49041 AACTGAGC
1 AACTGAGC
49049 GGCTCGAAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.30, C:0.23, G:0.28, T:0.20
Consensus pattern (16 bp):
AACTGAGCAGTTCACG
Left flanking sequence: Indices 48509 -- 49008
TTCAGCGGCGACGGCTGGCGGTAGGGCAGGCCCTGGCCCGCGATGCGTGGCGGCGGCTGCGGCTG
GAACATCGCCAGGGTGTCGTAGTGGTACACCCGGTCGTTATAGGAGGCCATCAGGGTGTTGGCCT
TAATGGTGGTGTCGTCGTCGATGGAGGCGGGCGACGAGTTCATGGGTCCCAATGGACAGAGAGGA
GGGGGAGGTGGTGGTGGAGAAAGGAAGGAAGTGGTTCAAAGGAGTCTGGGTAGACCACAGGAGGG
TGGAGGTTCGAAGGTTGAAGGTGAAGGTTGAAGGATGGAAGGTTGGAAAAGGTTGGAACCTGAAG
GATAACCTGAAGGATGAACCTGAAGGATGGAACCTGAAGGATGAACCTGAGGGATGAACCTGAAG
GATGAACCTGAGGGATGAACCTGAAGGATGGAACCTTAGGAAAGGAAAAAAGGAAGGTAGTAAGA
GTTACGGAGAACCTAGGGAGGACCTGAATGAACTGAAATCGAACA
Right flanking sequence: Indices 49049 -- 49548
GGCTCGAAAAACTGGGCGGATACTGATAACCTGGGTACCTGGAAGTGCCTGGAACAAACGAATCA
ACCACTAACGGTGTCTAGGGAGACTCGTGGAACAACACCTAAAAAACGGAACCCTGAAAAGAATG
AACACCTAGATAACCGACGAAGTGGATCGGAACCGAGGGAGTGGAGGGAACCTGGAAGGGCGCAC
AATAAACCAAGAACGCTGACTTGGCAACAACAACCAAAAACGCGTCAACTAACGGGTCAACTAAC
GGGGCTCAACGGAGCAGGGGCTTCAACAAGTCGGAGACTGCTGGGTCAGACCACGGATAGGGGGT
TGCAGGGGTTGCAACAACGACGGGTCCGGTGGAACAAGGGGATCAGCCACGGGACGGCTTGGGCT
TGACAAAAGGACACACGGTAAATTTACAATCGAGTCCGAGAAAAACAGAAAAATCCTGGTGTGTA
TGAAGGTGAAATGTGGTGTGGTGTCGTCATGCACATATTTTCCTC
Found at i:49302 original size:12 final size:12
Alignment explanation
Indices: 49282--49311 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
49272 AACAACCAAA
*
49282 AACGCGTCAACT
1 AACGGGTCAACT
49294 AACGGGTCAACT
1 AACGGGTCAACT
49306 AACGGG
1 AACGGG
49312 GCTCAACGGA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.33, C:0.27, G:0.27, T:0.13
Consensus pattern (12 bp):
AACGGGTCAACT
Left flanking sequence: Indices 48782 -- 49281
GTTGAAGGTGAAGGTTGAAGGATGGAAGGTTGGAAAAGGTTGGAACCTGAAGGATAACCTGAAGG
ATGAACCTGAAGGATGGAACCTGAAGGATGAACCTGAGGGATGAACCTGAAGGATGAACCTGAGG
GATGAACCTGAAGGATGGAACCTTAGGAAAGGAAAAAAGGAAGGTAGTAAGAGTTACGGAGAACC
TAGGGAGGACCTGAATGAACTGAAATCGAACAAACTGAGCAGTTCACGAACTGAGTGGTTCACGA
ACTGAGCGGCTCGAAAAACTGGGCGGATACTGATAACCTGGGTACCTGGAAGTGCCTGGAACAAA
CGAATCAACCACTAACGGTGTCTAGGGAGACTCGTGGAACAACACCTAAAAAACGGAACCCTGAA
AAGAATGAACACCTAGATAACCGACGAAGTGGATCGGAACCGAGGGAGTGGAGGGAACCTGGAAG
GGCGCACAATAAACCAAGAACGCTGACTTGGCAACAACAACCAAA
Right flanking sequence: Indices 49312 -- 49811
GCTCAACGGAGCAGGGGCTTCAACAAGTCGGAGACTGCTGGGTCAGACCACGGATAGGGGGTTGC
AGGGGTTGCAACAACGACGGGTCCGGTGGAACAAGGGGATCAGCCACGGGACGGCTTGGGCTTGA
CAAAAGGACACACGGTAAATTTACAATCGAGTCCGAGAAAAACAGAAAAATCCTGGTGTGTATGA
AGGTGAAATGTGGTGTGGTGTCGTCATGCACATATTTTCCTCGCTACTGTCTACAAGCAAATATT
TTTTAACCTAGCTCGAGGAACCGCCGCAGGCGCGAGGGGACCCGCGGGAGCAGTTGGCGACCGCT
GCTAGTTGAGATCAACCCGTTGGCTCAGACAAAATACGGGTGCACGGGGTGTCCGCACCGAGAGT
GGGCTTCTGGAACCCGGACACCGGGTGGGGCACGGCCAACAAAGGCGGAGTGCCACGCCTTTGTT
GTCCGTTGCTCCCATTGGTGCCCACAGTGGGGGGATGCGGGAGGT
Found at i:53800 original size:12 final size:12
Alignment explanation
Indices: 53783--53811 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
53773 CGACCCAGTC
53783 CGACGGTCAGCT
1 CGACGGTCAGCT
53795 CGACGGTCAGCT
1 CGACGGTCAGCT
53807 CGACG
1 CGACG
53812 AGACAGCGGC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.17, C:0.34, G:0.34, T:0.14
Consensus pattern (12 bp):
CGACGGTCAGCT
Left flanking sequence: Indices 53283 -- 53782
CTCGAGGCGGCGTTTTTGCGCGCCATCGAGGCCCAGTGGCCGCTTGTGGCCCACACCCACCCCGA
CTTTGTGCTCAACCAGCTCGTGGTGGTGCTCTGTTTCTGTGAGTTGGTGGGGTTGGGACGCAACC
AGGGCCAGATCCGCGCCATGGAGCGGTTGGCGTTCCGGTTCATCGACAAGGTGTTGGAGACGGTG
AACCGGTGGCTCAAGCTGAGCCCTCCCGTGGAGGTTGTGAAGCCCGTGGTGAAGGAGCCCGTGAA
GCAGAAGCGGAAGCGGGTGCGCAAGAAGAAGGGGAAAGAAGAAAGCGAGTTAGATGGCGCCGAGA
AGCTGGATGAGAACCTGAAGATCGAGAACCTGGACGTGGACGGTACCCAGGCCAAGACCCAGGCT
ACCGACTCGTCCAACCACACCCACATTTCGGTGGTGTTGGACGGTCCGGGCGAAGAAGAGGCTCC
CAAGGCGGACCCCGTGGCGGAGTCTGTCGACGGGTCGACCCAGTC
Right flanking sequence: Indices 53812 -- 54311
AGACAGCGGCGGAATCTTCTCCTGTCCAGCGGGTGGTCCCCTGGCTGATGCTTGCGGCCGTCCGT
CTCATTTTCGCGTGGTTCAAGGAGACCACCCCGGCGTTGGCCACCATGCACCGCCGCTACACTAC
GCTCCAGGCGATGGTCCAGCTCTTGAACCGGCTCCTGGTCCTGAACGCGGGCGTGCCTGCCTCCA
GACCCACCCGTGCGTACTACTTCACGGAGGACGTGGACTTCAAGGACTTCTCGGTGATCAAGTAC
CAGTTCAAGGACTTCACCGACGACCGGTTGTTCAACGACTACGATCTCATGGCGGGCGACTTTTC
CGGGCTCTGTGACGACACCGGGCGGCCGTCGTTTTTGGGCGACCTCCCGCTGGTGATGGCCTACG
AAAGCTTCAAGCGAACCGAGGCCGTGCTCAACATGGGCAAGCGGTTGCTCGAGTTCAACACCGTG
GGCATTGTGCTCGAAGACGGGGTGTTCACCTGGAACCAGGCGGAC
Found at i:54791 original size:21 final size:21
Alignment explanation
Indices: 54753--54792 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
54743 AGCCAGCCAG
**
54753 CCGGTTGTCGCCAACCAGAAT
1 CCGGTTGTCAACAACCAGAAT
*
54774 CCGGTTGTCAACAGCCAGA
1 CCGGTTGTCAACAACCAGA
54793 GCCAGCTCAC
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.25, C:0.33, G:0.25, T:0.17
Consensus pattern (21 bp):
CCGGTTGTCAACAACCAGAAT
Left flanking sequence: Indices 54253 -- 54752
AGTTCAACACCGTGGGCATTGTGCTCGAAGACGGGGTGTTCACCTGGAACCAGGCGGACATCGCG
GCGATGAAGAAGGCGGGCTCGGGATCGGGCACCAACTCTGCCGGGTACGGGAGTGTCGCCGCCAA
CCAAGCGGGAGCCGCCAAAAAGGGCCCCGTGGACGGCAACTCGTACGCTGCCCAGATTGCCAGCC
GCAAGAAGAAGCCTCAGGGGACCGCTCCGGCGTCCAAGGAGGTTCTGGCTGCGCAGGGACCGCCG
GTGGCTCCCGCGATCTCGATGGAGGACCTCCAGACCCAGATTGCCAGCCACTTGCAGGGTAAGCT
TCGCGAGGGGTCTCCCTTTGCTGAGGACGAGTCGGACACCTCGGTGGTTTTGACGTCGATGGTGG
ACTCGCTCGTGGCAGAAACGCCCGCCAAGGACGACAGCAAGGCGAAGAAGGACGCGATGAAGATT
CTCCGAAAGCCTGAGGGCGAGACCAAGGCTCCTGAAGCCAGCCAG
Right flanking sequence: Indices 54793 -- 55292
GCCAGCTCACCAACCAGAGTCAGCCTGTTGCCAACCAGAGCCAGCCGCAGAACAGCCTTAACACG
CCTCTGCCTGCCTTGGGTGGCCCGTTGCTCTATGCCAACCCGTTCCCTCAGCCGCTGGCGTACCC
CCAGTTCATGCCCGTGGCACCGCAATCGTTCTACGGGCCCCAGCAATTCCCCCAGTACCAGCAGC
AGTACCCGCAGTACCAGCTTCCCGGGTTCATGGGTGGGTTTTCGGGAGCTCCGCAGGGGAACATC
TGGGGCACCGGGTCGTCTGGGCCGATGCTTCCTCCCCAGGGCCAGTCGCTTGCCAACTTCATGCC
TGGCCAGTACGCTCAGGGCCAGCAGCCGCAACAGCCGCAAGAGGAGCAAAAGGGCTGGAACAACC
AGTACCCGCAATACCAGTAGCTGCATGGCTATCTACATGGCTGCGACCAGTGCGGTAGCTGAACT
GGAATAACAACTTACTGTCGGGTAAGGACTGGCCAGGGTTGATAT
Found at i:54987 original size:21 final size:21
Alignment explanation
Indices: 54963--55005 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
54953 CTACGGGCCC
*
54963 CAGCAATTCCCCCAGTACCAG
1 CAGCAATACCCCCAGTACCAG
* *
54984 CAGCAGTACCCGCAGTACCAG
1 CAGCAATACCCCCAGTACCAG
55005 C
1 C
55006 TTCCCGGGTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.28, C:0.42, G:0.19, T:0.12
Consensus pattern (21 bp):
CAGCAATACCCCCAGTACCAG
Left flanking sequence: Indices 54463 -- 54962
AGGGGACCGCTCCGGCGTCCAAGGAGGTTCTGGCTGCGCAGGGACCGCCGGTGGCTCCCGCGATC
TCGATGGAGGACCTCCAGACCCAGATTGCCAGCCACTTGCAGGGTAAGCTTCGCGAGGGGTCTCC
CTTTGCTGAGGACGAGTCGGACACCTCGGTGGTTTTGACGTCGATGGTGGACTCGCTCGTGGCAG
AAACGCCCGCCAAGGACGACAGCAAGGCGAAGAAGGACGCGATGAAGATTCTCCGAAAGCCTGAG
GGCGAGACCAAGGCTCCTGAAGCCAGCCAGCCGGTTGTCGCCAACCAGAATCCGGTTGTCAACAG
CCAGAGCCAGCTCACCAACCAGAGTCAGCCTGTTGCCAACCAGAGCCAGCCGCAGAACAGCCTTA
ACACGCCTCTGCCTGCCTTGGGTGGCCCGTTGCTCTATGCCAACCCGTTCCCTCAGCCGCTGGCG
TACCCCCAGTTCATGCCCGTGGCACCGCAATCGTTCTACGGGCCC
Right flanking sequence: Indices 55006 -- 55505
TTCCCGGGTTCATGGGTGGGTTTTCGGGAGCTCCGCAGGGGAACATCTGGGGCACCGGGTCGTCT
GGGCCGATGCTTCCTCCCCAGGGCCAGTCGCTTGCCAACTTCATGCCTGGCCAGTACGCTCAGGG
CCAGCAGCCGCAACAGCCGCAAGAGGAGCAAAAGGGCTGGAACAACCAGTACCCGCAATACCAGT
AGCTGCATGGCTATCTACATGGCTGCGACCAGTGCGGTAGCTGAACTGGAATAACAACTTACTGT
CGGGTAAGGACTGGCCAGGGTTGATATCAGCGAGATTGGCCAGCGGTTATCATATAGACTGGCCA
GCGGTTATATTAACAATACTGGCTAGCGGGTAATATCAGAGACTGGCCTGCGGTTATTAGAGACT
GTTCAGCGGTTATATCATTAAGACTGGCCAGCGGTTAATAGAGACTGGCCAGCGTAATAGACTGG
CCAGCGTAATAGACTGGCCAGTGTAATAAACTGACCAGCGGTTAA
Found at i:55394 original size:21 final size:21
Alignment explanation
Indices: 55297--55449 Score: 90
Period size: 21 Copynumber: 6.7 Consensus size: 21
55287 TGATATCAGC
*
55297 GAGATTGGCCAGCGGTTATCATA
1 GAGACTGGCCAGCGGTTAT--TA
*
55320 TAGACTGGCCAGCGGTTATATTAA
1 GAGACTGGCCAGCGG-T-TATT-A
* * * *
55344 CAATACTGGCTAGCGGGTAATATCA
1 -GAGACTGGCCAGC-GGT--TATTA
*
55369 GAGACTGGCCTGCGGTTATTA
1 GAGACTGGCCAGCGGTTATTA
**
55390 GAGACTGTTCAGCGGTTATATCA
1 GAGACTGGCCAGCGGTTAT-T-A
* *
55413 TTAAGACTGGCCAGCGGTTAATA
1 --GAGACTGGCCAGCGGTTATTA
55436 GAGACTGGCCAGCG
1 GAGACTGGCCAGCG
55450 TAATAGACTG
Statistics
Matches: 101, Mismatches: 19, Indels: 22
0.71 0.13 0.15
Matches are distributed among these distances:
21 33 0.33
22 1 0.01
23 19 0.19
24 12 0.12
25 30 0.30
26 6 0.06
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.25
Consensus pattern (21 bp):
GAGACTGGCCAGCGGTTATTA
Left flanking sequence: Indices 54797 -- 55296
GCTCACCAACCAGAGTCAGCCTGTTGCCAACCAGAGCCAGCCGCAGAACAGCCTTAACACGCCTC
TGCCTGCCTTGGGTGGCCCGTTGCTCTATGCCAACCCGTTCCCTCAGCCGCTGGCGTACCCCCAG
TTCATGCCCGTGGCACCGCAATCGTTCTACGGGCCCCAGCAATTCCCCCAGTACCAGCAGCAGTA
CCCGCAGTACCAGCTTCCCGGGTTCATGGGTGGGTTTTCGGGAGCTCCGCAGGGGAACATCTGGG
GCACCGGGTCGTCTGGGCCGATGCTTCCTCCCCAGGGCCAGTCGCTTGCCAACTTCATGCCTGGC
CAGTACGCTCAGGGCCAGCAGCCGCAACAGCCGCAAGAGGAGCAAAAGGGCTGGAACAACCAGTA
CCCGCAATACCAGTAGCTGCATGGCTATCTACATGGCTGCGACCAGTGCGGTAGCTGAACTGGAA
TAACAACTTACTGTCGGGTAAGGACTGGCCAGGGTTGATATCAGC
Right flanking sequence: Indices 55450 -- 55949
TAATAGACTGGCCAGCGTAATAGACTGGCCAGTGTAATAAACTGACCAGCGGTTAATACCAGTAA
CAGACTGGCTAGCAGTTATATCAATACGACTCGCTGCGGTTAATATCAGTAACAGACTGCTAGTG
TTAATAGAGCCCTCAAACCGCCTACACCTGGCATAGATTACAAACTGTATCGCTCGATGGGTTAC
CCAATCGGTCGGTCGTGGGGAACCACATTCCGCTGATCGACGCCAACGTACGCCGTGATTTTACG
GCGTTCCTGGTAAACAATGGGCTCCACGCCCACCCAGCGTCTGACCGCTCGGGCCCCGAAGCGTA
GTGTAGTATTTTTTAACCACACAATGGAAAGTGTCGGGAATTGGCTTCGTAACTGCCAATCACGG
CTCAAGTTGCCCGCGGGCCACGCACCATGTAATGGAACAATCGGAATGAGGCGACGACCCGAGGC
AACAAAGACCCCGATGGCGATGACGCAGCGGAGAAAATATCCGCC
Found at i:55422 original size:70 final size:71
Alignment explanation
Indices: 55274--55449 Score: 173
Period size: 70 Copynumber: 2.5 Consensus size: 71
55264 GTCGGGTAAG
* * * *
55274 GACTGGCCAG-GGTTGATATCAGCGAGATTGGCCAGCGGTTATCATATAGACTGGCCAGCGGTTA
1 GACTGGCCAGCGGGTAATATCA--GAGACTGGCCAGCGGTTAT-ATAGAGACTGGCCAGCGGTTA
*
55338 TATTAACAA
63 TATCAACAA
* * * **
55347 TACTGGCTAGCGGGTAATATCAGAGACTGGCCTGCGGTTAT-TAGAGACTGTTCAGCGGTTATAT
1 GACTGGCCAGCGGGTAATATCAGAGACTGGCCAGCGGTTATATAGAGACTGGCCAGCGGTTATAT
**
55411 CATTAA
66 CAACAA
*
55417 GACTGGCCAGC-GGTTA-AT-AGAGACTGGCCAGCG
1 GACTGGCCAGCGGGTAATATCAGAGACTGGCCAGCG
55450 TAATAGACTG
Statistics
Matches: 86, Mismatches: 16, Indels: 8
0.78 0.15 0.07
Matches are distributed among these distances:
67 14 0.16
68 2 0.02
69 4 0.05
70 32 0.37
72 17 0.20
73 8 0.09
74 9 0.10
ACGTcount: A:0.26, C:0.19, G:0.30, T:0.25
Consensus pattern (71 bp):
GACTGGCCAGCGGGTAATATCAGAGACTGGCCAGCGGTTATATAGAGACTGGCCAGCGGTTATAT
CAACAA
Left flanking sequence: Indices 54774 -- 55273
CCGGTTGTCAACAGCCAGAGCCAGCTCACCAACCAGAGTCAGCCTGTTGCCAACCAGAGCCAGCC
GCAGAACAGCCTTAACACGCCTCTGCCTGCCTTGGGTGGCCCGTTGCTCTATGCCAACCCGTTCC
CTCAGCCGCTGGCGTACCCCCAGTTCATGCCCGTGGCACCGCAATCGTTCTACGGGCCCCAGCAA
TTCCCCCAGTACCAGCAGCAGTACCCGCAGTACCAGCTTCCCGGGTTCATGGGTGGGTTTTCGGG
AGCTCCGCAGGGGAACATCTGGGGCACCGGGTCGTCTGGGCCGATGCTTCCTCCCCAGGGCCAGT
CGCTTGCCAACTTCATGCCTGGCCAGTACGCTCAGGGCCAGCAGCCGCAACAGCCGCAAGAGGAG
CAAAAGGGCTGGAACAACCAGTACCCGCAATACCAGTAGCTGCATGGCTATCTACATGGCTGCGA
CCAGTGCGGTAGCTGAACTGGAATAACAACTTACTGTCGGGTAAG
Right flanking sequence: Indices 55450 -- 55949
TAATAGACTGGCCAGCGTAATAGACTGGCCAGTGTAATAAACTGACCAGCGGTTAATACCAGTAA
CAGACTGGCTAGCAGTTATATCAATACGACTCGCTGCGGTTAATATCAGTAACAGACTGCTAGTG
TTAATAGAGCCCTCAAACCGCCTACACCTGGCATAGATTACAAACTGTATCGCTCGATGGGTTAC
CCAATCGGTCGGTCGTGGGGAACCACATTCCGCTGATCGACGCCAACGTACGCCGTGATTTTACG
GCGTTCCTGGTAAACAATGGGCTCCACGCCCACCCAGCGTCTGACCGCTCGGGCCCCGAAGCGTA
GTGTAGTATTTTTTAACCACACAATGGAAAGTGTCGGGAATTGGCTTCGTAACTGCCAATCACGG
CTCAAGTTGCCCGCGGGCCACGCACCATGTAATGGAACAATCGGAATGAGGCGACGACCCGAGGC
AACAAAGACCCCGATGGCGATGACGCAGCGGAGAAAATATCCGCC
Found at i:55449 original size:46 final size:45
Alignment explanation
Indices: 55297--55449 Score: 132
Period size: 46 Copynumber: 3.3 Consensus size: 45
55287 TGATATCAGC
*
55297 GAGATTGGCCAGCGG-T-TATCATATAGACTGGCCAGCGGTTATATTAA
1 GAGACTGGCCAGCGGTTATATCATA-AGACTGGCCAGCGGTTA-A-T-A
* * * * * * *
55344 CAATACTGGCTAGCGGGTAATATCA-GAGACTGGCCTGCGGTTATTA
1 -GAGACTGGCCAGC-GGTTATATCATAAGACTGGCCAGCGGTTAATA
**
55390 GAGACTGTTCAGCGGTTATATCATTAAGACTGGCCAGCGGTTAATA
1 GAGACTGGCCAGCGGTTATATCA-TAAGACTGGCCAGCGGTTAATA
55436 GAGACTGGCCAGCG
1 GAGACTGGCCAGCG
55450 TAATAGACTG
Statistics
Matches: 81, Mismatches: 19, Indels: 12
0.72 0.17 0.11
Matches are distributed among these distances:
44 9 0.11
45 8 0.10
46 31 0.38
47 1 0.01
48 9 0.11
49 18 0.22
51 5 0.06
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.25
Consensus pattern (45 bp):
GAGACTGGCCAGCGGTTATATCATAAGACTGGCCAGCGGTTAATA
Left flanking sequence: Indices 54797 -- 55296
GCTCACCAACCAGAGTCAGCCTGTTGCCAACCAGAGCCAGCCGCAGAACAGCCTTAACACGCCTC
TGCCTGCCTTGGGTGGCCCGTTGCTCTATGCCAACCCGTTCCCTCAGCCGCTGGCGTACCCCCAG
TTCATGCCCGTGGCACCGCAATCGTTCTACGGGCCCCAGCAATTCCCCCAGTACCAGCAGCAGTA
CCCGCAGTACCAGCTTCCCGGGTTCATGGGTGGGTTTTCGGGAGCTCCGCAGGGGAACATCTGGG
GCACCGGGTCGTCTGGGCCGATGCTTCCTCCCCAGGGCCAGTCGCTTGCCAACTTCATGCCTGGC
CAGTACGCTCAGGGCCAGCAGCCGCAACAGCCGCAAGAGGAGCAAAAGGGCTGGAACAACCAGTA
CCCGCAATACCAGTAGCTGCATGGCTATCTACATGGCTGCGACCAGTGCGGTAGCTGAACTGGAA
TAACAACTTACTGTCGGGTAAGGACTGGCCAGGGTTGATATCAGC
Right flanking sequence: Indices 55450 -- 55949
TAATAGACTGGCCAGCGTAATAGACTGGCCAGTGTAATAAACTGACCAGCGGTTAATACCAGTAA
CAGACTGGCTAGCAGTTATATCAATACGACTCGCTGCGGTTAATATCAGTAACAGACTGCTAGTG
TTAATAGAGCCCTCAAACCGCCTACACCTGGCATAGATTACAAACTGTATCGCTCGATGGGTTAC
CCAATCGGTCGGTCGTGGGGAACCACATTCCGCTGATCGACGCCAACGTACGCCGTGATTTTACG
GCGTTCCTGGTAAACAATGGGCTCCACGCCCACCCAGCGTCTGACCGCTCGGGCCCCGAAGCGTA
GTGTAGTATTTTTTAACCACACAATGGAAAGTGTCGGGAATTGGCTTCGTAACTGCCAATCACGG
CTCAAGTTGCCCGCGGGCCACGCACCATGTAATGGAACAATCGGAATGAGGCGACGACCCGAGGC
AACAAAGACCCCGATGGCGATGACGCAGCGGAGAAAATATCCGCC
Found at i:55459 original size:17 final size:17
Alignment explanation
Indices: 55416--55500 Score: 107
Period size: 17 Copynumber: 4.8 Consensus size: 17
55406 TATATCATTA
55416 AGACTGGCCAGCGGTTAAT
1 AGACTGGCCAGC-G-TAAT
55435 AGAGACTGGCCAGCGTAAT
1 --AGACTGGCCAGCGTAAT
55454 AGACTGGCCAGCGTAAT
1 AGACTGGCCAGCGTAAT
*
55471 AGACTGGCCAGTGTAAT
1 AGACTGGCCAGCGTAAT
* *
55488 AAACTGACCAGCG
1 AGACTGGCCAGCG
55501 GTTAATACCA
Statistics
Matches: 60, Mismatches: 4, Indels: 4
0.88 0.06 0.06
Matches are distributed among these distances:
17 43 0.72
19 4 0.07
20 1 0.02
21 12 0.20
ACGTcount: A:0.31, C:0.22, G:0.29, T:0.18
Consensus pattern (17 bp):
AGACTGGCCAGCGTAAT
Left flanking sequence: Indices 54916 -- 55415
CGTACCCCCAGTTCATGCCCGTGGCACCGCAATCGTTCTACGGGCCCCAGCAATTCCCCCAGTAC
CAGCAGCAGTACCCGCAGTACCAGCTTCCCGGGTTCATGGGTGGGTTTTCGGGAGCTCCGCAGGG
GAACATCTGGGGCACCGGGTCGTCTGGGCCGATGCTTCCTCCCCAGGGCCAGTCGCTTGCCAACT
TCATGCCTGGCCAGTACGCTCAGGGCCAGCAGCCGCAACAGCCGCAAGAGGAGCAAAAGGGCTGG
AACAACCAGTACCCGCAATACCAGTAGCTGCATGGCTATCTACATGGCTGCGACCAGTGCGGTAG
CTGAACTGGAATAACAACTTACTGTCGGGTAAGGACTGGCCAGGGTTGATATCAGCGAGATTGGC
CAGCGGTTATCATATAGACTGGCCAGCGGTTATATTAACAATACTGGCTAGCGGGTAATATCAGA
GACTGGCCTGCGGTTATTAGAGACTGTTCAGCGGTTATATCATTA
Right flanking sequence: Indices 55501 -- 56000
GTTAATACCAGTAACAGACTGGCTAGCAGTTATATCAATACGACTCGCTGCGGTTAATATCAGTA
ACAGACTGCTAGTGTTAATAGAGCCCTCAAACCGCCTACACCTGGCATAGATTACAAACTGTATC
GCTCGATGGGTTACCCAATCGGTCGGTCGTGGGGAACCACATTCCGCTGATCGACGCCAACGTAC
GCCGTGATTTTACGGCGTTCCTGGTAAACAATGGGCTCCACGCCCACCCAGCGTCTGACCGCTCG
GGCCCCGAAGCGTAGTGTAGTATTTTTTAACCACACAATGGAAAGTGTCGGGAATTGGCTTCGTA
ACTGCCAATCACGGCTCAAGTTGCCCGCGGGCCACGCACCATGTAATGGAACAATCGGAATGAGG
CGACGACCCGAGGCAACAAAGACCCCGATGGCGATGACGCAGCGGAGAAAATATCCGCCAACGGT
GTCGGGACGGCAAACCCGCTCGCTAGTGGGCCTCGGACGAGCGGG
Found at i:55584 original size:26 final size:28
Alignment explanation
Indices: 55501--55585 Score: 83
Period size: 25 Copynumber: 3.2 Consensus size: 28
55491 CTGACCAGCG
* *
55501 GTTAATACCAGTAACAGACTGGCTAGCA
1 GTTAATATCAGTAACAGACTCGCTAGCA
* *
55529 GTT-ATATCAAT-AC-GACTCGCT-GCG
1 GTTAATATCAGTAACAGACTCGCTAGCA
*
55553 GTTAATATCAGTAACAGACT-GCTAG-T
1 GTTAATATCAGTAACAGACTCGCTAGCA
55579 GTTAATA
1 GTTAATA
55586 GAGCCCTCAA
Statistics
Matches: 47, Mismatches: 6, Indels: 10
0.75 0.10 0.16
Matches are distributed among these distances:
24 5 0.11
25 14 0.30
26 14 0.30
27 11 0.23
28 3 0.06
ACGTcount: A:0.33, C:0.19, G:0.20, T:0.28
Consensus pattern (28 bp):
GTTAATATCAGTAACAGACTCGCTAGCA
Left flanking sequence: Indices 55001 -- 55500
CCAGCTTCCCGGGTTCATGGGTGGGTTTTCGGGAGCTCCGCAGGGGAACATCTGGGGCACCGGGT
CGTCTGGGCCGATGCTTCCTCCCCAGGGCCAGTCGCTTGCCAACTTCATGCCTGGCCAGTACGCT
CAGGGCCAGCAGCCGCAACAGCCGCAAGAGGAGCAAAAGGGCTGGAACAACCAGTACCCGCAATA
CCAGTAGCTGCATGGCTATCTACATGGCTGCGACCAGTGCGGTAGCTGAACTGGAATAACAACTT
ACTGTCGGGTAAGGACTGGCCAGGGTTGATATCAGCGAGATTGGCCAGCGGTTATCATATAGACT
GGCCAGCGGTTATATTAACAATACTGGCTAGCGGGTAATATCAGAGACTGGCCTGCGGTTATTAG
AGACTGTTCAGCGGTTATATCATTAAGACTGGCCAGCGGTTAATAGAGACTGGCCAGCGTAATAG
ACTGGCCAGCGTAATAGACTGGCCAGTGTAATAAACTGACCAGCG
Right flanking sequence: Indices 55586 -- 56085
GAGCCCTCAAACCGCCTACACCTGGCATAGATTACAAACTGTATCGCTCGATGGGTTACCCAATC
GGTCGGTCGTGGGGAACCACATTCCGCTGATCGACGCCAACGTACGCCGTGATTTTACGGCGTTC
CTGGTAAACAATGGGCTCCACGCCCACCCAGCGTCTGACCGCTCGGGCCCCGAAGCGTAGTGTAG
TATTTTTTAACCACACAATGGAAAGTGTCGGGAATTGGCTTCGTAACTGCCAATCACGGCTCAAG
TTGCCCGCGGGCCACGCACCATGTAATGGAACAATCGGAATGAGGCGACGACCCGAGGCAACAAA
GACCCCGATGGCGATGACGCAGCGGAGAAAATATCCGCCAACGGTGTCGGGACGGCAAACCCGCT
CGCTAGTGGGCCTCGGACGAGCGGGGTCGCCACGGACCGCGAGCGGGCGGAACGTGCTCACCATC
CTGCGCACGGATCCACCTGCCACCGGCACATGCAACGACACGTAC
Found at i:57760 original size:21 final size:21
Alignment explanation
Indices: 57719--57760 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
57709 GGCACGCAGC
* * *
57719 TTGGCTCGTCGGTGTCTGGCT
1 TTGGCTCGGCGGTGGCGGGCT
57740 TTGGCTCGGCGGTGGCGGGCT
1 TTGGCTCGGCGGTGGCGGGCT
57761 CGGGCTCGTT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.00, C:0.24, G:0.45, T:0.31
Consensus pattern (21 bp):
TTGGCTCGGCGGTGGCGGGCT
Left flanking sequence: Indices 57219 -- 57718
CCAGCACCCGCTGACGATGATAGAAATCCCTGATCTCGACGACCCGGTGCCGCCCGGCCACAACG
CGGCCAAGTTTGGCGGCGCCCCGCCGGCGCCGGGCCCACAAACGCTAGTTTCCGCGGTCTCCCAG
ATGGAAGTGAGCGATGGCGACGACGCCGACGTCACCGCGAGCACGGTGGCGGTGCTGCTCGCGCC
CAGCGTGGACCAGCCGCCGTTCCACGACTTTTCCGGCGGGTTTGCCGTCGACATGACCCCGCCCG
AGTTGGCCGAGGGCACCGTGGGGTCCGAGGGGATCGACGAGGCGGTGGACACGCTGTACGTGTTG
GGCGGCATCAACGAGTACGACCAGTTTGCCCGGTCCGACAGCGTGGGGCTGGTGCAGTACACGCC
GCGCGGGGTGGCCGGGCTAGCCACCTTGGGCTCCCCCATGGTGTCGCAGGTGGGCGACTCGGGCC
CGGTCAAGTTTCTGGTGCTGCTGAACGCAGGGTCGGGCACGCAGC
Right flanking sequence: Indices 57761 -- 58260
CGGGCTCGTTGGTGGGCTCGGTGTCTGGCTCTGCGCTAGGCATCACCACCCCAACCACACAGGCG
GGCACACATGCGAGCACAGCACAGGCAAGCACACAGGCGAGCACACGCGCTGGCACCGCATATGC
TGGCACACATGCTGGAACACACGGCTCACACGCTGGCACACACGCCAACACATACGACCACTCGC
CTTACAGCAACCACTCGCCACACAGCAACCGTTCGCCCGAACAACCACACCTGTTCCCCTCATCC
ACCCATCCCTCATCTTCCCTCCCCTCATCTGCCCTCCCCTCGTCCACCGCCTTCTCCTCCGACGG
CCCGTTCTCCGGCCCGTTCCCCCACCCAGAGCCCTCGTCGGGACTCATCCACATCCCCGAGGAGG
ACGACGACTTCCCGCACCACCCGCTGCACTTCGACTCCGACTTGTTCGGCTACAACCCCAACTTC
TCGTTTGCAGCGTCGCTGTCGCTCCCCGCCACCCCGCAGTCGCCG
Found at i:57833 original size:12 final size:12
Alignment explanation
Indices: 57816--57871 Score: 58
Period size: 12 Copynumber: 4.4 Consensus size: 12
57806 CCACCCCAAC
*
57816 CACACAGGCGGG
1 CACACAGGCGAG
*
57828 CACACATGCGAG
1 CACACAGGCGAG
*
57840 CACAGCACAGGCAAG
1 --CA-CACAGGCGAG
57855 CACACAGGCGAG
1 CACACAGGCGAG
57867 CACAC
1 CACAC
57872 GCGCTGGCAC
Statistics
Matches: 36, Mismatches: 5, Indels: 6
0.77 0.11 0.13
Matches are distributed among these distances:
12 24 0.67
13 2 0.06
14 2 0.06
15 8 0.22
ACGTcount: A:0.34, C:0.36, G:0.29, T:0.02
Consensus pattern (12 bp):
CACACAGGCGAG
Left flanking sequence: Indices 57316 -- 57815
GGCCCACAAACGCTAGTTTCCGCGGTCTCCCAGATGGAAGTGAGCGATGGCGACGACGCCGACGT
CACCGCGAGCACGGTGGCGGTGCTGCTCGCGCCCAGCGTGGACCAGCCGCCGTTCCACGACTTTT
CCGGCGGGTTTGCCGTCGACATGACCCCGCCCGAGTTGGCCGAGGGCACCGTGGGGTCCGAGGGG
ATCGACGAGGCGGTGGACACGCTGTACGTGTTGGGCGGCATCAACGAGTACGACCAGTTTGCCCG
GTCCGACAGCGTGGGGCTGGTGCAGTACACGCCGCGCGGGGTGGCCGGGCTAGCCACCTTGGGCT
CCCCCATGGTGTCGCAGGTGGGCGACTCGGGCCCGGTCAAGTTTCTGGTGCTGCTGAACGCAGGG
TCGGGCACGCAGCTTGGCTCGTCGGTGTCTGGCTTTGGCTCGGCGGTGGCGGGCTCGGGCTCGTT
GGTGGGCTCGGTGTCTGGCTCTGCGCTAGGCATCACCACCCCAAC
Right flanking sequence: Indices 57872 -- 58371
GCGCTGGCACCGCATATGCTGGCACACATGCTGGAACACACGGCTCACACGCTGGCACACACGCC
AACACATACGACCACTCGCCTTACAGCAACCACTCGCCACACAGCAACCGTTCGCCCGAACAACC
ACACCTGTTCCCCTCATCCACCCATCCCTCATCTTCCCTCCCCTCATCTGCCCTCCCCTCGTCCA
CCGCCTTCTCCTCCGACGGCCCGTTCTCCGGCCCGTTCCCCCACCCAGAGCCCTCGTCGGGACTC
ATCCACATCCCCGAGGAGGACGACGACTTCCCGCACCACCCGCTGCACTTCGACTCCGACTTGTT
CGGCTACAACCCCAACTTCTCGTTTGCAGCGTCGCTGTCGCTCCCCGCCACCCCGCAGTCGCCGC
CGGCCCGCCCAGACTCGCCGTGCTACGACGAGGTGGTGGGCCTTCCCCACGAGGAGCTCCGCCGC
GAAAATGCCGCCGACGACAAGACCCCGACCGAGTACACCCTCCAC
Found at i:57848 original size:27 final size:27
Alignment explanation
Indices: 57818--57870 Score: 79
Period size: 27 Copynumber: 2.0 Consensus size: 27
57808 ACCCCAACCA
** *
57818 CACAGGCGGGCACACATGCGAGCACAG
1 CACAGGCAAGCACACAGGCGAGCACAG
57845 CACAGGCAAGCACACAGGCGAGCACA
1 CACAGGCAAGCACACAGGCGAGCACA
57871 CGCGCTGGCA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.34, C:0.34, G:0.30, T:0.02
Consensus pattern (27 bp):
CACAGGCAAGCACACAGGCGAGCACAG
Left flanking sequence: Indices 57318 -- 57817
CCCACAAACGCTAGTTTCCGCGGTCTCCCAGATGGAAGTGAGCGATGGCGACGACGCCGACGTCA
CCGCGAGCACGGTGGCGGTGCTGCTCGCGCCCAGCGTGGACCAGCCGCCGTTCCACGACTTTTCC
GGCGGGTTTGCCGTCGACATGACCCCGCCCGAGTTGGCCGAGGGCACCGTGGGGTCCGAGGGGAT
CGACGAGGCGGTGGACACGCTGTACGTGTTGGGCGGCATCAACGAGTACGACCAGTTTGCCCGGT
CCGACAGCGTGGGGCTGGTGCAGTACACGCCGCGCGGGGTGGCCGGGCTAGCCACCTTGGGCTCC
CCCATGGTGTCGCAGGTGGGCGACTCGGGCCCGGTCAAGTTTCTGGTGCTGCTGAACGCAGGGTC
GGGCACGCAGCTTGGCTCGTCGGTGTCTGGCTTTGGCTCGGCGGTGGCGGGCTCGGGCTCGTTGG
TGGGCTCGGTGTCTGGCTCTGCGCTAGGCATCACCACCCCAACCA
Right flanking sequence: Indices 57871 -- 58370
CGCGCTGGCACCGCATATGCTGGCACACATGCTGGAACACACGGCTCACACGCTGGCACACACGC
CAACACATACGACCACTCGCCTTACAGCAACCACTCGCCACACAGCAACCGTTCGCCCGAACAAC
CACACCTGTTCCCCTCATCCACCCATCCCTCATCTTCCCTCCCCTCATCTGCCCTCCCCTCGTCC
ACCGCCTTCTCCTCCGACGGCCCGTTCTCCGGCCCGTTCCCCCACCCAGAGCCCTCGTCGGGACT
CATCCACATCCCCGAGGAGGACGACGACTTCCCGCACCACCCGCTGCACTTCGACTCCGACTTGT
TCGGCTACAACCCCAACTTCTCGTTTGCAGCGTCGCTGTCGCTCCCCGCCACCCCGCAGTCGCCG
CCGGCCCGCCCAGACTCGCCGTGCTACGACGAGGTGGTGGGCCTTCCCCACGAGGAGCTCCGCCG
CGAAAATGCCGCCGACGACAAGACCCCGACCGAGTACACCCTCCA
Found at i:57970 original size:18 final size:18
Alignment explanation
Indices: 57947--57985 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
57937 AACACATACG
**
57947 ACCACTCGCCTTACAGCA
1 ACCACTCGCCACACAGCA
57965 ACCACTCGCCACACAGCA
1 ACCACTCGCCACACAGCA
57983 ACC
1 ACC
57986 GTTCGCCCGA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.31, C:0.49, G:0.10, T:0.10
Consensus pattern (18 bp):
ACCACTCGCCACACAGCA
Left flanking sequence: Indices 57447 -- 57946
CGGCGGGTTTGCCGTCGACATGACCCCGCCCGAGTTGGCCGAGGGCACCGTGGGGTCCGAGGGGA
TCGACGAGGCGGTGGACACGCTGTACGTGTTGGGCGGCATCAACGAGTACGACCAGTTTGCCCGG
TCCGACAGCGTGGGGCTGGTGCAGTACACGCCGCGCGGGGTGGCCGGGCTAGCCACCTTGGGCTC
CCCCATGGTGTCGCAGGTGGGCGACTCGGGCCCGGTCAAGTTTCTGGTGCTGCTGAACGCAGGGT
CGGGCACGCAGCTTGGCTCGTCGGTGTCTGGCTTTGGCTCGGCGGTGGCGGGCTCGGGCTCGTTG
GTGGGCTCGGTGTCTGGCTCTGCGCTAGGCATCACCACCCCAACCACACAGGCGGGCACACATGC
GAGCACAGCACAGGCAAGCACACAGGCGAGCACACGCGCTGGCACCGCATATGCTGGCACACATG
CTGGAACACACGGCTCACACGCTGGCACACACGCCAACACATACG
Right flanking sequence: Indices 57986 -- 58485
GTTCGCCCGAACAACCACACCTGTTCCCCTCATCCACCCATCCCTCATCTTCCCTCCCCTCATCT
GCCCTCCCCTCGTCCACCGCCTTCTCCTCCGACGGCCCGTTCTCCGGCCCGTTCCCCCACCCAGA
GCCCTCGTCGGGACTCATCCACATCCCCGAGGAGGACGACGACTTCCCGCACCACCCGCTGCACT
TCGACTCCGACTTGTTCGGCTACAACCCCAACTTCTCGTTTGCAGCGTCGCTGTCGCTCCCCGCC
ACCCCGCAGTCGCCGCCGGCCCGCCCAGACTCGCCGTGCTACGACGAGGTGGTGGGCCTTCCCCA
CGAGGAGCTCCGCCGCGAAAATGCCGCCGACGACAAGACCCCGACCGAGTACACCCTCCACATCA
TCTTCACCCAGTTCGTCCGGTTGGCCGAGCGCAAGCTCGCGGTGTGCGCGGACCACCCGCTCTCG
CAGGAGGCCCCGGTGATCGAGACGCTTGCCGAAGGCGTCGACCGC
Found at i:58045 original size:15 final size:15
Alignment explanation
Indices: 58027--58061 Score: 61
Period size: 15 Copynumber: 2.3 Consensus size: 15
58017 ATCCACCCAT
*
58027 CCCTCATCTTCCCTC
1 CCCTCATCTGCCCTC
58042 CCCTCATCTGCCCTC
1 CCCTCATCTGCCCTC
58057 CCCTC
1 CCCTC
58062 GTCCACCGCC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.06, C:0.63, G:0.03, T:0.29
Consensus pattern (15 bp):
CCCTCATCTGCCCTC
Left flanking sequence: Indices 57527 -- 58026
ACACGCTGTACGTGTTGGGCGGCATCAACGAGTACGACCAGTTTGCCCGGTCCGACAGCGTGGGG
CTGGTGCAGTACACGCCGCGCGGGGTGGCCGGGCTAGCCACCTTGGGCTCCCCCATGGTGTCGCA
GGTGGGCGACTCGGGCCCGGTCAAGTTTCTGGTGCTGCTGAACGCAGGGTCGGGCACGCAGCTTG
GCTCGTCGGTGTCTGGCTTTGGCTCGGCGGTGGCGGGCTCGGGCTCGTTGGTGGGCTCGGTGTCT
GGCTCTGCGCTAGGCATCACCACCCCAACCACACAGGCGGGCACACATGCGAGCACAGCACAGGC
AAGCACACAGGCGAGCACACGCGCTGGCACCGCATATGCTGGCACACATGCTGGAACACACGGCT
CACACGCTGGCACACACGCCAACACATACGACCACTCGCCTTACAGCAACCACTCGCCACACAGC
AACCGTTCGCCCGAACAACCACACCTGTTCCCCTCATCCACCCAT
Right flanking sequence: Indices 58062 -- 58561
GTCCACCGCCTTCTCCTCCGACGGCCCGTTCTCCGGCCCGTTCCCCCACCCAGAGCCCTCGTCGG
GACTCATCCACATCCCCGAGGAGGACGACGACTTCCCGCACCACCCGCTGCACTTCGACTCCGAC
TTGTTCGGCTACAACCCCAACTTCTCGTTTGCAGCGTCGCTGTCGCTCCCCGCCACCCCGCAGTC
GCCGCCGGCCCGCCCAGACTCGCCGTGCTACGACGAGGTGGTGGGCCTTCCCCACGAGGAGCTCC
GCCGCGAAAATGCCGCCGACGACAAGACCCCGACCGAGTACACCCTCCACATCATCTTCACCCAG
TTCGTCCGGTTGGCCGAGCGCAAGCTCGCGGTGTGCGCGGACCACCCGCTCTCGCAGGAGGCCCC
GGTGATCGAGACGCTTGCCGAAGGCGTCGACCGCGAGTTCGACAAGTGCGTGGCGCTGTTGGGAT
TCATCGCCAAGCGCAAACCGAAGCCCGTGATCGACCTGGTGATGT
Found at i:66078 original size:17 final size:17
Alignment explanation
Indices: 66039--66096 Score: 73
Period size: 17 Copynumber: 3.4 Consensus size: 17
66029 AATGGTTTCG
*
66039 CTGGTCTTGTACTCCACG
1 CTGGTC-TGTACTCCACA
*
66057 C-GGTCTGTACTCTACA
1 CTGGTCTGTACTCCACA
66073 CTGGTCTGTACTCCACA
1 CTGGTCTGTACTCCACA
*
66090 CTAGTCT
1 CTGGTCT
66097 TGCAGTCTAC
Statistics
Matches: 35, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
16 10 0.29
17 24 0.69
18 1 0.03
ACGTcount: A:0.16, C:0.33, G:0.19, T:0.33
Consensus pattern (17 bp):
CTGGTCTGTACTCCACA
Left flanking sequence: Indices 65539 -- 66038
ACGCCCGGTGGTGGCCGCGATCCGCCGGCGCCGATGCCGCACCACTCGCCGCTTCATTTTAATCA
TTTGCCGCTGACGCGGTTTGAGAACTTGCTTGGGAACCTGAAGAAGCGCAGCCGCAAGCTGTTGG
TGTCGCTGCCGGTGCTGGTGGTGCACTTGCTGGAGAACCCTGCGGTGGCCACGGCGAATATTCTT
AACCAGCCGGTGCCGCCGCTGCCGGTGAACCTGCCGCTGGGAGCTGCAATTTCGAGAAAGCGTAA
CTAGAGAATAGAAGCAGCGTGTAAAGTGGGGTTGAGAAGAGGATTCTAACCACTGGTCAGTCCAC
AACCATTTGAGAGACGTAACTAAAGAATAGAAGTAATGTGAAAGTGGGGGGGCGTGGATGGTTTA
GCATTGGTCTTGTATTTCACTGGTCTTGCATCCACAGCCATGTCGAGAAACTAGAAAATAGAAAG
TGATGTGTAAGGGAAGTGTGGGTTGGCTGGCCTGGAATGGTTTCG
Right flanking sequence: Indices 66097 -- 66596
TGCAGTCTACAGCCACTTGAGAATCGATACTAGAGAATAGAAGTAATGTGTAAATAGGGGGTTAA
GCTTGTGTGGAATGGTTCGAGAATAGATTCTAACCTCTGGTCTGTACTCCACTCTGGTCTGTACT
CCACTCTGGTCTGTACTCTACATTGGCCTTGTACTCCTTTTGACGAAGAATAGAAAAGTAATGTG
TGAAAGCAGTGGTGGGGTTGAGCTGGCGTGAATGGTTCCACACTGGTCATGTCTCCCACACTGGT
CTTGCAGTCTGTCTTGCAGTCCACACTGTCTTGCGTTCCACACTGTCTTGCAGTCCATGGTCTCG
CAGTCCACACTCTTGCATTCCACTGTCTTGCAGTCCCACTGGACTTGCATTCCACACTGTCTTGC
ATGTCAAGAATGAGAATGTGGTAAGCCATTCAGCCAAAAGTGGGAAGATGAATGACATGCTAGCA
TTAGTTTGGTTCACGGTTCACACAGGCAGTGACTAGCGTAATAAT
Found at i:66218 original size:17 final size:17
Alignment explanation
Indices: 66196--66244 Score: 98
Period size: 17 Copynumber: 2.9 Consensus size: 17
66186 AGATTCTAAC
66196 CTCTGGTCTGTACTCCA
1 CTCTGGTCTGTACTCCA
66213 CTCTGGTCTGTACTCCA
1 CTCTGGTCTGTACTCCA
66230 CTCTGGTCTGTACTC
1 CTCTGGTCTGTACTC
66245 TACATTGGCC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 32 1.00
ACGTcount: A:0.10, C:0.35, G:0.18, T:0.37
Consensus pattern (17 bp):
CTCTGGTCTGTACTCCA
Left flanking sequence: Indices 65696 -- 66195
TGCTGGAGAACCCTGCGGTGGCCACGGCGAATATTCTTAACCAGCCGGTGCCGCCGCTGCCGGTG
AACCTGCCGCTGGGAGCTGCAATTTCGAGAAAGCGTAACTAGAGAATAGAAGCAGCGTGTAAAGT
GGGGTTGAGAAGAGGATTCTAACCACTGGTCAGTCCACAACCATTTGAGAGACGTAACTAAAGAA
TAGAAGTAATGTGAAAGTGGGGGGGCGTGGATGGTTTAGCATTGGTCTTGTATTTCACTGGTCTT
GCATCCACAGCCATGTCGAGAAACTAGAAAATAGAAAGTGATGTGTAAGGGAAGTGTGGGTTGGC
TGGCCTGGAATGGTTTCGCTGGTCTTGTACTCCACGCGGTCTGTACTCTACACTGGTCTGTACTC
CACACTAGTCTTGCAGTCTACAGCCACTTGAGAATCGATACTAGAGAATAGAAGTAATGTGTAAA
TAGGGGGTTAAGCTTGTGTGGAATGGTTCGAGAATAGATTCTAAC
Right flanking sequence: Indices 66245 -- 66744
TACATTGGCCTTGTACTCCTTTTGACGAAGAATAGAAAAGTAATGTGTGAAAGCAGTGGTGGGGT
TGAGCTGGCGTGAATGGTTCCACACTGGTCATGTCTCCCACACTGGTCTTGCAGTCTGTCTTGCA
GTCCACACTGTCTTGCGTTCCACACTGTCTTGCAGTCCATGGTCTCGCAGTCCACACTCTTGCAT
TCCACTGTCTTGCAGTCCCACTGGACTTGCATTCCACACTGTCTTGCATGTCAAGAATGAGAATG
TGGTAAGCCATTCAGCCAAAAGTGGGAAGATGAATGACATGCTAGCATTAGTTTGGTTCACGGTT
CACACAGGCAGTGACTAGCGTAATAATTTGACTTTATTGATCTACTATGTCACTTCTTGAAACAC
TACTTGTATTTTAATTGGAAATTGTAGCTTACAGTGTGTGACGCAACAGTGTTCATCCTCGATCC
CCCTTCGTTACCTGACGTGCGCAATCTACACTGCCTTGGCACTGT
Found at i:66438 original size:30 final size:30
Alignment explanation
Indices: 66368--66461 Score: 86
Period size: 30 Copynumber: 3.0 Consensus size: 30
66358 TTGCAGTCTG
*
66368 TCTTGCAGTCCACACTGTCTTGC-GTTCCACAC
1 TCTTGCAGT-C-CACTGTCTCGCAG-TCCACAC
66400 TGTCTTGCAGTCCA-TGGTCTCGCAGTCCACAC
1 --TCTTGCAGTCCACT-GTCTCGCAGTCCACAC
* *
66432 TCTTGCATTCCACTGTCTTGCAGTCC-CAC
1 TCTTGCAGTCCACTGTCTCGCAGTCCACAC
66461 T
1 T
66462 GGACTTGCAT
Statistics
Matches: 54, Mismatches: 3, Indels: 11
0.79 0.04 0.16
Matches are distributed among these distances:
29 4 0.07
30 22 0.41
31 2 0.04
32 15 0.28
33 2 0.04
34 9 0.17
ACGTcount: A:0.15, C:0.36, G:0.17, T:0.32
Consensus pattern (30 bp):
TCTTGCAGTCCACTGTCTCGCAGTCCACAC
Left flanking sequence: Indices 65868 -- 66367
ATTTGAGAGACGTAACTAAAGAATAGAAGTAATGTGAAAGTGGGGGGGCGTGGATGGTTTAGCAT
TGGTCTTGTATTTCACTGGTCTTGCATCCACAGCCATGTCGAGAAACTAGAAAATAGAAAGTGAT
GTGTAAGGGAAGTGTGGGTTGGCTGGCCTGGAATGGTTTCGCTGGTCTTGTACTCCACGCGGTCT
GTACTCTACACTGGTCTGTACTCCACACTAGTCTTGCAGTCTACAGCCACTTGAGAATCGATACT
AGAGAATAGAAGTAATGTGTAAATAGGGGGTTAAGCTTGTGTGGAATGGTTCGAGAATAGATTCT
AACCTCTGGTCTGTACTCCACTCTGGTCTGTACTCCACTCTGGTCTGTACTCTACATTGGCCTTG
TACTCCTTTTGACGAAGAATAGAAAAGTAATGTGTGAAAGCAGTGGTGGGGTTGAGCTGGCGTGA
ATGGTTCCACACTGGTCATGTCTCCCACACTGGTCTTGCAGTCTG
Right flanking sequence: Indices 66462 -- 66961
GGACTTGCATTCCACACTGTCTTGCATGTCAAGAATGAGAATGTGGTAAGCCATTCAGCCAAAAG
TGGGAAGATGAATGACATGCTAGCATTAGTTTGGTTCACGGTTCACACAGGCAGTGACTAGCGTA
ATAATTTGACTTTATTGATCTACTATGTCACTTCTTGAAACACTACTTGTATTTTAATTGGAAAT
TGTAGCTTACAGTGTGTGACGCAACAGTGTTCATCCTCGATCCCCCTTCGTTACCTGACGTGCGC
AATCTACACTGCCTTGGCACTGTAGTCATCCACACCGTGATTCCACCCTCTCGGTATAAAAACTG
CCACGTCCCTATCAACCCTACAACCATGATCAAGAGCGTCCACGTGTGTAACCTCTGCCACCACC
CCATAATGCACCACCACTACCGCGACACCAACTGCTGTGAAACGAGAAGCTTAAGGTGCCGAGTA
TGCTTCAACAACTGCTGTGCCCGGGGCAAGGATTGTGTCAAGAGG
Found at i:66443 original size:15 final size:15
Alignment explanation
Indices: 66368--66461 Score: 66
Period size: 15 Copynumber: 6.1 Consensus size: 15
66358 TTGCAGTCTG
66368 TCTTGCAGTCCACAC
1 TCTTGCAGTCCACAC
66383 TGTCTTGC-GTTCCACAC
1 --TCTTGCAG-TCCACAC
***
66400 TGTCTTGCAGTCCATGG
1 --TCTTGCAGTCCACAC
*
66417 TCTCGCAGTCCACAC
1 TCTTGCAGTCCACAC
* **
66432 TCTTGCATTCCACTG
1 TCTTGCAGTCCACAC
66447 TCTTGCAGTCC-CAC
1 TCTTGCAGTCCACAC
66461 T
1 T
66462 GGACTTGCAT
Statistics
Matches: 61, Mismatches: 14, Indels: 7
0.74 0.17 0.09
Matches are distributed among these distances:
14 2 0.03
15 32 0.52
16 1 0.02
17 25 0.41
18 1 0.02
ACGTcount: A:0.15, C:0.36, G:0.17, T:0.32
Consensus pattern (15 bp):
TCTTGCAGTCCACAC
Left flanking sequence: Indices 65868 -- 66367
ATTTGAGAGACGTAACTAAAGAATAGAAGTAATGTGAAAGTGGGGGGGCGTGGATGGTTTAGCAT
TGGTCTTGTATTTCACTGGTCTTGCATCCACAGCCATGTCGAGAAACTAGAAAATAGAAAGTGAT
GTGTAAGGGAAGTGTGGGTTGGCTGGCCTGGAATGGTTTCGCTGGTCTTGTACTCCACGCGGTCT
GTACTCTACACTGGTCTGTACTCCACACTAGTCTTGCAGTCTACAGCCACTTGAGAATCGATACT
AGAGAATAGAAGTAATGTGTAAATAGGGGGTTAAGCTTGTGTGGAATGGTTCGAGAATAGATTCT
AACCTCTGGTCTGTACTCCACTCTGGTCTGTACTCCACTCTGGTCTGTACTCTACATTGGCCTTG
TACTCCTTTTGACGAAGAATAGAAAAGTAATGTGTGAAAGCAGTGGTGGGGTTGAGCTGGCGTGA
ATGGTTCCACACTGGTCATGTCTCCCACACTGGTCTTGCAGTCTG
Right flanking sequence: Indices 66462 -- 66961
GGACTTGCATTCCACACTGTCTTGCATGTCAAGAATGAGAATGTGGTAAGCCATTCAGCCAAAAG
TGGGAAGATGAATGACATGCTAGCATTAGTTTGGTTCACGGTTCACACAGGCAGTGACTAGCGTA
ATAATTTGACTTTATTGATCTACTATGTCACTTCTTGAAACACTACTTGTATTTTAATTGGAAAT
TGTAGCTTACAGTGTGTGACGCAACAGTGTTCATCCTCGATCCCCCTTCGTTACCTGACGTGCGC
AATCTACACTGCCTTGGCACTGTAGTCATCCACACCGTGATTCCACCCTCTCGGTATAAAAACTG
CCACGTCCCTATCAACCCTACAACCATGATCAAGAGCGTCCACGTGTGTAACCTCTGCCACCACC
CCATAATGCACCACCACTACCGCGACACCAACTGCTGTGAAACGAGAAGCTTAAGGTGCCGAGTA
TGCTTCAACAACTGCTGTGCCCGGGGCAAGGATTGTGTCAAGAGG
Found at i:66488 original size:17 final size:17
Alignment explanation
Indices: 66365--66487 Score: 120
Period size: 17 Copynumber: 7.6 Consensus size: 17
66355 GTCTTGCAGT
66365 CTGTCTTGCAGTCCACA
1 CTGTCTTGCAGTCCACA
66382 CTGTCTTGC-GTTCCACA
1 CTGTCTTGCAG-TCCACA
66399 CTGTCTTGCAGT-C-CA
1 CTGTCTTGCAGTCCACA
*
66414 -TGGTCTCGCAGTCCACA
1 CT-GTCTTGCAGTCCACA
*
66431 C--TCTTGCA-TTC-CA
1 CTGTCTTGCAGTCCACA
66444 CTGTCTTGCAGTCC-CA
1 CTGTCTTGCAGTCCACA
* *
66460 CTGGACTTGCATTCCACA
1 CT-GTCTTGCAGTCCACA
66478 CTGTCTTGCA
1 CTGTCTTGCA
66488 TGTCAAGAAT
Statistics
Matches: 88, Mismatches: 7, Indels: 22
0.75 0.06 0.19
Matches are distributed among these distances:
13 3 0.03
14 3 0.03
15 24 0.27
16 9 0.10
17 44 0.50
18 5 0.06
ACGTcount: A:0.15, C:0.35, G:0.18, T:0.32
Consensus pattern (17 bp):
CTGTCTTGCAGTCCACA
Left flanking sequence: Indices 65865 -- 66364
ACCATTTGAGAGACGTAACTAAAGAATAGAAGTAATGTGAAAGTGGGGGGGCGTGGATGGTTTAG
CATTGGTCTTGTATTTCACTGGTCTTGCATCCACAGCCATGTCGAGAAACTAGAAAATAGAAAGT
GATGTGTAAGGGAAGTGTGGGTTGGCTGGCCTGGAATGGTTTCGCTGGTCTTGTACTCCACGCGG
TCTGTACTCTACACTGGTCTGTACTCCACACTAGTCTTGCAGTCTACAGCCACTTGAGAATCGAT
ACTAGAGAATAGAAGTAATGTGTAAATAGGGGGTTAAGCTTGTGTGGAATGGTTCGAGAATAGAT
TCTAACCTCTGGTCTGTACTCCACTCTGGTCTGTACTCCACTCTGGTCTGTACTCTACATTGGCC
TTGTACTCCTTTTGACGAAGAATAGAAAAGTAATGTGTGAAAGCAGTGGTGGGGTTGAGCTGGCG
TGAATGGTTCCACACTGGTCATGTCTCCCACACTGGTCTTGCAGT
Right flanking sequence: Indices 66488 -- 66987
TGTCAAGAATGAGAATGTGGTAAGCCATTCAGCCAAAAGTGGGAAGATGAATGACATGCTAGCAT
TAGTTTGGTTCACGGTTCACACAGGCAGTGACTAGCGTAATAATTTGACTTTATTGATCTACTAT
GTCACTTCTTGAAACACTACTTGTATTTTAATTGGAAATTGTAGCTTACAGTGTGTGACGCAACA
GTGTTCATCCTCGATCCCCCTTCGTTACCTGACGTGCGCAATCTACACTGCCTTGGCACTGTAGT
CATCCACACCGTGATTCCACCCTCTCGGTATAAAAACTGCCACGTCCCTATCAACCCTACAACCA
TGATCAAGAGCGTCCACGTGTGTAACCTCTGCCACCACCCCATAATGCACCACCACTACCGCGAC
ACCAACTGCTGTGAAACGAGAAGCTTAAGGTGCCGAGTATGCTTCAACAACTGCTGTGCCCGGGG
CAAGGATTGTGTCAAGAGGTGGCACCTGTTACCCTAAATAGATAA
Found at i:67358 original size:13 final size:13
Alignment explanation
Indices: 67342--67377 Score: 63
Period size: 13 Copynumber: 2.8 Consensus size: 13
67332 GGAGCGAGAT
67342 CGTGGTGGAGTAA
1 CGTGGTGGAGTAA
67355 CGTGGTGGAGTAA
1 CGTGGTGGAGTAA
*
67368 TGTGGTGGAG
1 CGTGGTGGAG
67378 GTTGTGAGGT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.19, C:0.06, G:0.50, T:0.25
Consensus pattern (13 bp):
CGTGGTGGAGTAA
Left flanking sequence: Indices 66842 -- 67341
TGCCACCACCCCATAATGCACCACCACTACCGCGACACCAACTGCTGTGAAACGAGAAGCTTAAG
GTGCCGAGTATGCTTCAACAACTGCTGTGCCCGGGGCAAGGATTGTGTCAAGAGGTGGCACCTGT
TACCCTAAATAGATAATGCACGTAATTTACTGCGCGCGGTCATACGAGTGATGGCTGCAAATGGT
AACCTAACGGAAAACACCAAGCCGTGGTAAAAGCCCTTCGAGCCCACTGTGACGCAATCGCATTA
CCTCGCAACTTCTCTGGAGTACCCGCTGCGAGCTGATCTCGCAACCTACTCGGGACACCGCCCTG
TCCAGTATATTATTAGCAACACAATCAGCGCGGCACTGCCACGCCGCTCCGATTCCATCTGTGGT
TTCAGCTGATCTGTAGGACCCTTGGTGCGTCCGCCTTGGTGCACCCGGTCGCCGTATCGCCAGCT
GATCAGACGTATTTTCCGACACGCCCTGTGCGTGTGGAGCGAGAT
Right flanking sequence: Indices 67378 -- 67877
GTTGTGAGGTGAAACCGTCGGTTGCTAAGGTGCCAGAGAACGTTGGTTTGTTGGTGTGGAAGAGA
ATATTGGATTAGTACGGGGTGTGTGTAAACTAAACCATTTTTATAGAGAATTTGCAAGTTGATAC
AAAATAATTTGGAAAGCTCTGAGGAAACATTTGAAATAAGACACACACTGTGTATTCTCTGCTTC
ACACCAAAAGGAGTGTTCCCGTTTCCTTTGCAGGCACCTAATGCTGGTTGGGAGGTACTTAATGC
CGGCCTTTGGAGGTACTCTCGGTCCAAACCTGGTTTCGTGCCGTCTTGAAGCAAAACAAAAATGG
CGATTAGCTTCTACGTATCAACACAAGAAGAGCTACAACACCACGTTCTCTGCTTCCTTCCGGAC
CGTGTTACAAGGCCCACCTCCTCTACGTCTACCTTCACCGTTGACCTGTATATAACATACCCACC
TATAGCAATTAGTCCACTTGTCAAAAATCAAAGAATAGGGCTAAT
Found at i:100907 original size:21 final size:22
Alignment explanation
Indices: 100861--100907 Score: 53
Period size: 21 Copynumber: 2.2 Consensus size: 22
100851 TCCTCGTCAA
* * *
100861 GGTCCTGTTCTTCTTCATCCTT
1 GGTCCTGATCGTCGTCATCCTT
100883 -GTCCTGATCGTCGTCAT-CTT
1 GGTCCTGATCGTCGTCATCCTT
100903 GGTCC
1 GGTCC
100908 AGGGCGTCCT
Statistics
Matches: 21, Mismatches: 3, Indels: 3
0.78 0.11 0.11
Matches are distributed among these distances:
20 3 0.14
21 18 0.86
ACGTcount: A:0.06, C:0.32, G:0.19, T:0.43
Consensus pattern (22 bp):
GGTCCTGATCGTCGTCATCCTT
Left flanking sequence: Indices 100361 -- 100860
AGCCGCTTCTTCATCCATCTCCTCATCACCCTTCGCATCTTCAACATCCTCTTGATTGGCACCTT
GGGTTTCGTCGTCGGTGTCATCAATATCCATCTCTTCTTGGCCATCCTCTTGACCTTCCTCTTCA
TCATCCCCGTCAAGGTTCATATCCTCAGGGAGATCCAAGACTTCCAGTTCAGGCACATGGTCGTC
CATTTTCTCGCCGTCTTCATTTCGGACATCATCCTCTTGCTCAGCAACATCATCCTCTTCGCCAT
CTTCCCTGTCTTCGTTCTCCTCCTGGTCCCCTTCTTCTTCTTGGCCCTTATCAGGCTTCTCCTGG
GGTTGATCCTTGGCCTCATTCTCGTCTTCATTGGCCTCCATCTCCTGATCATTTGTGGCCTGGTC
AATTTGATCGGTCTCCTTTTCCTTGGTGTCCTCCTTGGCTTCCTCGTCCCACATCTTCTCATCCA
CAGCGTTGGGGTCAAGGTCGTCGATGTCGTCAATCTCCTCGTCAA
Right flanking sequence: Indices 100908 -- 101407
AGGGCGTCCTCAAGGTCACCAGCCATGTCACCATCCATTTCCACGGCGTTGTCCTCTTTATCTTC
TTGGCCATCGTCCTTCTCCTTCTGATCCTCATTGGCCTTTTGAGCTTCTTCAGCAAGGTCGTCAT
CATTCTCAACATCATCGTTGTTGGTCTCGGCACCCTCACCGTCACCCAAGCCGGTACCATCGTGC
AACTTGTCGTCATTCTTGTCAGGTTGCTGAGGAGGCTGAGGAGAGCACATACCCTGCGTAGCCAC
GGTGTGCAACAGACTCATAAGAAGGTAGGTTGCCTTTGAGTTGTCGAAGTAGTTGGTGACAGCCA
TCTGAAGCAACTTCGACGCCATGTCGGCATAAGCGGCTACTAAGGGAAGCGTAAAGGATGCCAAC
GCTTGTACCATCGCCAGAGTCAGCTCATTGAACTCCACCAGATTGATGGTAGAAATACAACGGTC
CCAGCGCGCAGACACCCTCTTGATACCTGACAGCTTCACTAGGGC
Found at i:124375 original size:12 final size:12
Alignment explanation
Indices: 124366--124392 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
124356 CCAACAGCCT
124366 CCTAATCAGCAC
1 CCTAATCAGCAC
124378 CCTAATCAGCAC
1 CCTAATCAGCAC
124390 CCT
1 CCT
124393 GGCCAACACC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.30, C:0.44, G:0.07, T:0.19
Consensus pattern (12 bp):
CCTAATCAGCAC
Left flanking sequence: Indices 123866 -- 124365
CACACAAATTGAGCATCACCTACAAGGCTGGCCCCGAAAAGACACCCTGTAAGACTAAGTTGGCG
GACATCACCAACAAAACACCGGTCCGACCTGGTCCGGACTCGAGTCCGTCTACGGTAATCATGCT
GAGTGCTGCACGGGCAGACGAGGAGACCAACGAGGAAGAGGACGAGGAAAATCAACCTCCCAGCC
CTACTCCGCTTAAGGAAACCAAGCCGGTCACCGACAAGGCCCCGCCAATGATGGGAGTATTTTCC
GAAAGAAAGCCGAAGGAAAAGAAAAAGAAGCGGGCAGCTCCAACCAACACGAAGTTCCAGATCGT
GTTTACAGACGTCCACACTTTGATGAACAACAAAACAAAAAAGAAGGAGCCGAAGAAAAAGTTGG
GTCCTGCCATGGGTCAATGGGGAAATGCGCCGTCACAGGGTACCTCAAGCCAAACATATCAAATC
CCACCGCAGAACCCCAACCCACCGCAACATCCCAGCCAACAGCCT
Right flanking sequence: Indices 124393 -- 124892
GGCCAACACCCGAGCCAGCATCCTAGCCACCCTAGCCACCTTCAACCCCTTCCTCAATCCCAACC
CGCCCCCCGGGGCCACCCACGTCCGGCTGACGTCACCATCAACAGCTCCAAAGAGCTCTCGATGA
TGTCCCACCCGAACCAGACCACAGAGCACACCTCTTTTGAAATGGCTGGGGTTTCGCTGACGCCC
AATGGTAAATTTATCCTTGATAAGGTGTTTGAGCGACCCTCGCCCAACGGGTACGTAGGCTACGG
GCAAATGCCTCCTCCAAACGCCAAAATGGGTCCCCAACAGTACCAGCAACAGCAATTGATGATGA
TGCTGACTCCACAACACCAAAGTGTGATGAACTACGTTAATCTGCTATACCTGGAAGTGCTGCCA
CTCCAGGAGGGAGCCCTCCCGGTGTTTGCGTCGCCCACGCACTACCCCATTCTTAATTTGTCGGC
GCTGATGGTGCAACAAAACCAGCAACCACCCCAAAACCCATACAA
Found at i:128128 original size:9 final size:9
Alignment explanation
Indices: 128116--128151 Score: 54
Period size: 9 Copynumber: 4.0 Consensus size: 9
128106 GGAACAAGCC
128116 CAAGCCCAG
1 CAAGCCCAG
*
128125 CAAGCTCAG
1 CAAGCCCAG
*
128134 CAGGCCCAG
1 CAAGCCCAG
128143 CAAGCCCAG
1 CAAGCCCAG
128152 TACGAGAAGC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
9 23 1.00
ACGTcount: A:0.31, C:0.42, G:0.25, T:0.03
Consensus pattern (9 bp):
CAAGCCCAG
Left flanking sequence: Indices 127616 -- 128115
ATCAGTTCAAGAAACGGAACGGCTTGAACAGAAAGATCATGTGTGGCCGCACAGAAAAGAAGAAG
GACGATACCAGCCCACAGGTGGAAGAGATCACCAACCGTGAGTACGACCGCGATGACGTCTACAT
TGACAACCAGTTCCAACGGCTGCTGTCTCCTCCTGCACCGCCACAGGCGTCGTTTACGCCACAAG
TTGCGCCAGAAAAGACACCGATAGTGGCGCCCATCCAGCCCATGGCCACTCCCGAGCACACGAAC
CAGTTCAGACCGTCGCAAGGTCTCTCGTTCAAGAACAACGTGCTGTTTGGGTACCAATATCCACG
CGATGCTCCGCCACAACTGACTACGCCACAGCCACCGAGACAGGACTTTCTTCAGCAACCAGTAC
ACAAAAATCAGTTGCAGTTGCAACCTGGACTCCACCGTGTCCAGGCACAAGCGCAGTTTGAAAAG
CAACGCGAGCAGCAGGCCCAGTACGAGAAACAACGGGAACAAGCC
Right flanking sequence: Indices 128152 -- 128651
TACGAGAAGCAAGCCCAAGCCCAACAAGCTCAGTTTGAAAAGCAACGAGAGGCACAGCAAGCCCA
GTTTGAGAAGCAGAGAGAACAACGAGAGCGCGACCAAAGAGAACGCGAGCAGCGAGAACAGCGGG
AGAGAGAGCAAAGAGAGAGGGAACAACGGGAACGTGAACAACGCGAACAGCTTCAACAGCGCGAG
CTGCTCCAACGGGAACTGCCGCATCTCATGTCTCCCGCCGGCCGGGCCAGAGCTAACTCGCCCAC
ACCCAATTTCTTCGAGCTTGTGACGGCACCGGGGGCAGGTCCCCCGGAAGAACTGGGGATGAGCG
CTAGCGATATCGAGCGTTTCATCTATATGTTTGCCGATCGGTTCTTTCAAGATCACCAATACGAA
TACCCCCAGACGCTCAAGATCTTCCAGGAGTTTAAGACACTGTTCTTCAACGAACGGATCATTTG
CATGAAGTCAAAATACGCCCCGAGGCCGCTGGGACTGGCGCCGAT
Found at i:149898 original size:27 final size:27
Alignment explanation
Indices: 149859--149919 Score: 86
Period size: 27 Copynumber: 2.3 Consensus size: 27
149849 GGAGTGTCCT
149859 AAGCCTAACGAGTGCCCGGCGTGCCCG
1 AAGCCTAACGAGTGCCCGGCGTGCCCG
* ** *
149886 AAGCCTAATGAGTGCCCGGTTTGCCCT
1 AAGCCTAACGAGTGCCCGGCGTGCCCG
149913 AAGCCTA
1 AAGCCTA
149920 TGGAATGTCC
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.21, C:0.33, G:0.28, T:0.18
Consensus pattern (27 bp):
AAGCCTAACGAGTGCCCGGCGTGCCCG
Left flanking sequence: Indices 149359 -- 149858
CACCTCACATGTGGAAGTCAGACAAATGTCAGCCGCCTACTATCACTCCAGCACCTTCCCCGTAC
CCGACGGTTACCGTAACTTATCTCGATATCTGTAAGGGTCCCAGTAAGCAGTGGAGACAGTGTCT
TCATCCTGATGTGAAGACCCCTGTGTCTTGTTACCCAGGTGTGACTTATATTCCGAAGCACCCCC
ACACCTATTACACCAAGTACTGCGGTACTAAACCTGGCAAGATTTATGTGTATTGCACCAAGAAA
TGGGGCCAGCCTTGGAGAAAGTATTGTACCACGAAGCATGGCCCCGTGGTCACGTATTGCACGAC
CACGGTGAAGCACTACCCAGAGGAGCCACATACTAAGATCTATACCATTACCTACACTAAGCCGC
TGGAATGCCATGGATGCTCTCACCCCAAGGAGTGCCCTGCGTGCCCCAGGCCGCAGGAGTGCCCT
GTTTGCCCGAAGCCTCAAGAATGCCCCAAACCAAAGGAGTGTCCT
Right flanking sequence: Indices 149920 -- 150419
TGGAATGTCCCAAACCCCAAGAGTGTCCTAAGCCTAAGGAGTGCCCCGTGTGCCCTAAGCCAAAC
GAGTGCCCCGTATGCCCAAAGCCTATGGAATGTCCCAAACCCCAAGAGTGTCCTAAGCCTAAGGA
GTGCCCCGTATGCCCAAAGCCTATGGAGTGTCCTAAGCCACTGGAATGCCCCAAATGTCCTAAGC
CCAACGAGTGCCCCGTATGCCCGAAGCCTATGGAGTGTCCAAAGCCACTGGAATGCCCGAAATGT
CCCAAGCCTATTGAGTGCCCCAAGCCTTCAGATTGTCCCATTTGCCCCAAACCTATTGAATGCCC
TAAGCCAGTGGAATGTCCCAAGTGCCCTATTTGCCCCAAGCCAGAGTGTCCTAAACCCCTGGAAT
GCCCTAAGCCACCGGAGTGTCCCAAGCCGCTGGAGTGTCCCAAGTGTCCCAATTGCCCTGTTTGC
CCCAAACCAGAGTGTCCTAAACCTCTGGAGTGCCCCAAGCCACCG
Found at i:149932 original size:90 final size:90
Alignment explanation
Indices: 149775--150057 Score: 354
Period size: 90 Copynumber: 3.1 Consensus size: 90
149765 CTCTCACCCC
* * ** * * * * *
149775 AAGGAGTGCCCTGCGTGCCCCAGGCCGCAGGAGTGCCCTGTTTGCCCGAAGCCTCA-AGAATGCC
1 AAGGAGTGCCCCGCGTGCCCCAAGCCAAACGAGTGCCCCGTTTGCCCAAAGCCT-ATGGAATGTC
*
149839 CCAAA-CCAAAGGAGTGTCCTAAGCCT
65 CCAAACCCCAA-GAGTGTCCTAAGCCT
* * * * * * *
149865 AACGAGTGCCCGGCGTGCCCGAAGCCTAATGAGTGCCCGGTTTGCCCTAAGCCTATGGAATGTCC
1 AAGGAGTGCCCCGCGTGCCCCAAGCCAAACGAGTGCCCCGTTTGCCCAAAGCCTATGGAATGTCC
149930 CAAACCCCAAGAGTGTCCTAAGCCT
66 CAAACCCCAAGAGTGTCCTAAGCCT
* * *
149955 AAGGAGTGCCCCGTGTGCCCTAAGCCAAACGAGTGCCCCGTATGCCCAAAGCCTATGGAATGTCC
1 AAGGAGTGCCCCGCGTGCCCCAAGCCAAACGAGTGCCCCGTTTGCCCAAAGCCTATGGAATGTCC
150020 CAAACCCCAAGAGTGTCCTAAGCCT
66 CAAACCCCAAGAGTGTCCTAAGCCT
150045 AAGGAGTGCCCCG
1 AAGGAGTGCCCCG
150058 TATGCCCAAA
Statistics
Matches: 170, Mismatches: 21, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
89 1 0.01
90 165 0.97
91 4 0.02
ACGTcount: A:0.24, C:0.33, G:0.26, T:0.17
Consensus pattern (90 bp):
AAGGAGTGCCCCGCGTGCCCCAAGCCAAACGAGTGCCCCGTTTGCCCAAAGCCTATGGAATGTCC
CAAACCCCAAGAGTGTCCTAAGCCT
Left flanking sequence: Indices 149275 -- 149774
GGAACCCTACCCCAAGTACTCCCGGTCCTACTACGCCACCCAGTACTGGCAAGCCACTGCTGAGC
TTACCCATTTGCGATGGGCCACCTCACATGTGGAAGTCAGACAAATGTCAGCCGCCTACTATCAC
TCCAGCACCTTCCCCGTACCCGACGGTTACCGTAACTTATCTCGATATCTGTAAGGGTCCCAGTA
AGCAGTGGAGACAGTGTCTTCATCCTGATGTGAAGACCCCTGTGTCTTGTTACCCAGGTGTGACT
TATATTCCGAAGCACCCCCACACCTATTACACCAAGTACTGCGGTACTAAACCTGGCAAGATTTA
TGTGTATTGCACCAAGAAATGGGGCCAGCCTTGGAGAAAGTATTGTACCACGAAGCATGGCCCCG
TGGTCACGTATTGCACGACCACGGTGAAGCACTACCCAGAGGAGCCACATACTAAGATCTATACC
ATTACCTACACTAAGCCGCTGGAATGCCATGGATGCTCTCACCCC
Right flanking sequence: Indices 150058 -- 150557
TATGCCCAAAGCCTATGGAGTGTCCTAAGCCACTGGAATGCCCCAAATGTCCTAAGCCCAACGAG
TGCCCCGTATGCCCGAAGCCTATGGAGTGTCCAAAGCCACTGGAATGCCCGAAATGTCCCAAGCC
TATTGAGTGCCCCAAGCCTTCAGATTGTCCCATTTGCCCCAAACCTATTGAATGCCCTAAGCCAG
TGGAATGTCCCAAGTGCCCTATTTGCCCCAAGCCAGAGTGTCCTAAACCCCTGGAATGCCCTAAG
CCACCGGAGTGTCCCAAGCCGCTGGAGTGTCCCAAGTGTCCCAATTGCCCTGTTTGCCCCAAACC
AGAGTGTCCTAAACCTCTGGAGTGCCCCAAGCCACCGGAGTGTCCCAAGCCACTGACTTGCATTC
CTACCCCCATCTACGTAACGGTCACAAAAACTGAAACCATCACTAAGTGCGACAACAACCCATGT
CCTGCGCGCCCTACGGTCACAGTAACTCGATCATGTGCTTGCCCA
Found at i:149976 original size:27 final size:27
Alignment explanation
Indices: 149946--150009 Score: 92
Period size: 27 Copynumber: 2.4 Consensus size: 27
149936 CCAAGAGTGT
* *
149946 CCTAAGCCTAAGGAGTGCCCCGTGTGC
1 CCTAAGCCTAACGAGTGCCCCGTATGC
*
149973 CCTAAGCCAAACGAGTGCCCCGTATGC
1 CCTAAGCCTAACGAGTGCCCCGTATGC
*
150000 CCAAAGCCTA
1 CCTAAGCCTA
150010 TGGAATGTCC
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.25, C:0.36, G:0.23, T:0.16
Consensus pattern (27 bp):
CCTAAGCCTAACGAGTGCCCCGTATGC
Left flanking sequence: Indices 149446 -- 149945
TCGATATCTGTAAGGGTCCCAGTAAGCAGTGGAGACAGTGTCTTCATCCTGATGTGAAGACCCCT
GTGTCTTGTTACCCAGGTGTGACTTATATTCCGAAGCACCCCCACACCTATTACACCAAGTACTG
CGGTACTAAACCTGGCAAGATTTATGTGTATTGCACCAAGAAATGGGGCCAGCCTTGGAGAAAGT
ATTGTACCACGAAGCATGGCCCCGTGGTCACGTATTGCACGACCACGGTGAAGCACTACCCAGAG
GAGCCACATACTAAGATCTATACCATTACCTACACTAAGCCGCTGGAATGCCATGGATGCTCTCA
CCCCAAGGAGTGCCCTGCGTGCCCCAGGCCGCAGGAGTGCCCTGTTTGCCCGAAGCCTCAAGAAT
GCCCCAAACCAAAGGAGTGTCCTAAGCCTAACGAGTGCCCGGCGTGCCCGAAGCCTAATGAGTGC
CCGGTTTGCCCTAAGCCTATGGAATGTCCCAAACCCCAAGAGTGT
Right flanking sequence: Indices 150010 -- 150509
TGGAATGTCCCAAACCCCAAGAGTGTCCTAAGCCTAAGGAGTGCCCCGTATGCCCAAAGCCTATG
GAGTGTCCTAAGCCACTGGAATGCCCCAAATGTCCTAAGCCCAACGAGTGCCCCGTATGCCCGAA
GCCTATGGAGTGTCCAAAGCCACTGGAATGCCCGAAATGTCCCAAGCCTATTGAGTGCCCCAAGC
CTTCAGATTGTCCCATTTGCCCCAAACCTATTGAATGCCCTAAGCCAGTGGAATGTCCCAAGTGC
CCTATTTGCCCCAAGCCAGAGTGTCCTAAACCCCTGGAATGCCCTAAGCCACCGGAGTGTCCCAA
GCCGCTGGAGTGTCCCAAGTGTCCCAATTGCCCTGTTTGCCCCAAACCAGAGTGTCCTAAACCTC
TGGAGTGCCCCAAGCCACCGGAGTGTCCCAAGCCACTGACTTGCATTCCTACCCCCATCTACGTA
ACGGTCACAAAAACTGAAACCATCACTAAGTGCGACAACAACCCA
Found at i:150040 original size:63 final size:63
Alignment explanation
Indices: 149973--150154 Score: 206
Period size: 72 Copynumber: 2.7 Consensus size: 63
149963 CCCCGTGTGC
*
149973 CCTAAGCCAAACGAGTGCCCCGTATGCCCAAAGCCTATGGAATGTCCCA-AA-CCCCAAGAGTGT
1 CCTAAGCCAAACGAGTGCCCCGTATGCCCAAAGCCTATGGAGTGTCCCAGAAGCCCCAA-A-TGT
* *
150036 CCTAAGCCTAAGGAGTGCCCCGTATGCCCAAAGCCTATGGAGTGTCCTAAGCCACTGGAATGCCC
1 CCTAAGCCAAACGAGTGCCCCGTATGCCCAAAGCCTATGGAGTGT-C----CCA---GAA-GCCC
150101 CAAATGT
57 CAAATGT
* *
150108 CCTAAGCCCAACGAGTGCCCCGTATGCCCGAAGCCTATGGAGTGTCC
1 CCTAAGCCAAACGAGTGCCCCGTATGCCCAAAGCCTATGGAGTGTCC
150155 AAAGCCACTG
Statistics
Matches: 102, Mismatches: 6, Indels: 18
0.81 0.05 0.14
Matches are distributed among these distances:
63 42 0.41
64 1 0.01
67 1 0.01
68 3 0.03
71 1 0.01
72 47 0.46
73 1 0.01
74 6 0.06
ACGTcount: A:0.26, C:0.33, G:0.23, T:0.18
Consensus pattern (63 bp):
CCTAAGCCAAACGAGTGCCCCGTATGCCCAAAGCCTATGGAGTGTCCCAGAAGCCCCAAATGT
Left flanking sequence: Indices 149473 -- 149972
AGTGGAGACAGTGTCTTCATCCTGATGTGAAGACCCCTGTGTCTTGTTACCCAGGTGTGACTTAT
ATTCCGAAGCACCCCCACACCTATTACACCAAGTACTGCGGTACTAAACCTGGCAAGATTTATGT
GTATTGCACCAAGAAATGGGGCCAGCCTTGGAGAAAGTATTGTACCACGAAGCATGGCCCCGTGG
TCACGTATTGCACGACCACGGTGAAGCACTACCCAGAGGAGCCACATACTAAGATCTATACCATT
ACCTACACTAAGCCGCTGGAATGCCATGGATGCTCTCACCCCAAGGAGTGCCCTGCGTGCCCCAG
GCCGCAGGAGTGCCCTGTTTGCCCGAAGCCTCAAGAATGCCCCAAACCAAAGGAGTGTCCTAAGC
CTAACGAGTGCCCGGCGTGCCCGAAGCCTAATGAGTGCCCGGTTTGCCCTAAGCCTATGGAATGT
CCCAAACCCCAAGAGTGTCCTAAGCCTAAGGAGTGCCCCGTGTGC
Right flanking sequence: Indices 150155 -- 150654
AAAGCCACTGGAATGCCCGAAATGTCCCAAGCCTATTGAGTGCCCCAAGCCTTCAGATTGTCCCA
TTTGCCCCAAACCTATTGAATGCCCTAAGCCAGTGGAATGTCCCAAGTGCCCTATTTGCCCCAAG
CCAGAGTGTCCTAAACCCCTGGAATGCCCTAAGCCACCGGAGTGTCCCAAGCCGCTGGAGTGTCC
CAAGTGTCCCAATTGCCCTGTTTGCCCCAAACCAGAGTGTCCTAAACCTCTGGAGTGCCCCAAGC
CACCGGAGTGTCCCAAGCCACTGACTTGCATTCCTACCCCCATCTACGTAACGGTCACAAAAACT
GAAACCATCACTAAGTGCGACAACAACCCATGTCCTGCGCGCCCTACGGTCACAGTAACTCGATC
ATGTGCTTGCCCAGGCTTCACAACTGTCACCGTACCTTGTGCTGCTGAGAAGGATTGCAAGTCGT
TTGTCACTTCCTACTTCCCGTGCAACTGCCCTGGGGGACCTGTGA
Found at i:150058 original size:90 final size:90
Alignment explanation
Indices: 149805--150070 Score: 356
Period size: 90 Copynumber: 3.0 Consensus size: 90
149795 CAGGCCGCAG
* * * * * *
149805 GAGTGCCCTGTTTGCCCGAAGCCTCA-AGAATGCCCCAAA-CCAAAGGAGTGTCCTAAGCCTAAC
1 GAGTGCCCCGTTTGCCCAAAGCCT-ATGGAATGTCCCAAACCCCAA-GAGTGTCCTAAGCCTAAG
* * * * *
149868 GAGTGCCCGGCGTGCCCGAAGCCTAAT
64 GAGTGCCCCGTGTGCCCAAAGCCAAAC
* *
149895 GAGTGCCCGGTTTGCCCTAAGCCTATGGAATGTCCCAAACCCCAAGAGTGTCCTAAGCCTAAGGA
1 GAGTGCCCCGTTTGCCCAAAGCCTATGGAATGTCCCAAACCCCAAGAGTGTCCTAAGCCTAAGGA
*
149960 GTGCCCCGTGTGCCCTAAGCCAAAC
66 GTGCCCCGTGTGCCCAAAGCCAAAC
*
149985 GAGTGCCCCGTATGCCCAAAGCCTATGGAATGTCCCAAACCCCAAGAGTGTCCTAAGCCTAAGGA
1 GAGTGCCCCGTTTGCCCAAAGCCTATGGAATGTCCCAAACCCCAAGAGTGTCCTAAGCCTAAGGA
*
150050 GTGCCCCGTATGCCCAAAGCC
66 GTGCCCCGTGTGCCCAAAGCC
150071 TATGGAGTGT
Statistics
Matches: 158, Mismatches: 16, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
89 1 0.01
90 153 0.97
91 4 0.03
ACGTcount: A:0.26, C:0.33, G:0.24, T:0.17
Consensus pattern (90 bp):
GAGTGCCCCGTTTGCCCAAAGCCTATGGAATGTCCCAAACCCCAAGAGTGTCCTAAGCCTAAGGA
GTGCCCCGTGTGCCCAAAGCCAAAC
Left flanking sequence: Indices 149305 -- 149804
CTACGCCACCCAGTACTGGCAAGCCACTGCTGAGCTTACCCATTTGCGATGGGCCACCTCACATG
TGGAAGTCAGACAAATGTCAGCCGCCTACTATCACTCCAGCACCTTCCCCGTACCCGACGGTTAC
CGTAACTTATCTCGATATCTGTAAGGGTCCCAGTAAGCAGTGGAGACAGTGTCTTCATCCTGATG
TGAAGACCCCTGTGTCTTGTTACCCAGGTGTGACTTATATTCCGAAGCACCCCCACACCTATTAC
ACCAAGTACTGCGGTACTAAACCTGGCAAGATTTATGTGTATTGCACCAAGAAATGGGGCCAGCC
TTGGAGAAAGTATTGTACCACGAAGCATGGCCCCGTGGTCACGTATTGCACGACCACGGTGAAGC
ACTACCCAGAGGAGCCACATACTAAGATCTATACCATTACCTACACTAAGCCGCTGGAATGCCAT
GGATGCTCTCACCCCAAGGAGTGCCCTGCGTGCCCCAGGCCGCAG
Right flanking sequence: Indices 150071 -- 150570
TATGGAGTGTCCTAAGCCACTGGAATGCCCCAAATGTCCTAAGCCCAACGAGTGCCCCGTATGCC
CGAAGCCTATGGAGTGTCCAAAGCCACTGGAATGCCCGAAATGTCCCAAGCCTATTGAGTGCCCC
AAGCCTTCAGATTGTCCCATTTGCCCCAAACCTATTGAATGCCCTAAGCCAGTGGAATGTCCCAA
GTGCCCTATTTGCCCCAAGCCAGAGTGTCCTAAACCCCTGGAATGCCCTAAGCCACCGGAGTGTC
CCAAGCCGCTGGAGTGTCCCAAGTGTCCCAATTGCCCTGTTTGCCCCAAACCAGAGTGTCCTAAA
CCTCTGGAGTGCCCCAAGCCACCGGAGTGTCCCAAGCCACTGACTTGCATTCCTACCCCCATCTA
CGTAACGGTCACAAAAACTGAAACCATCACTAAGTGCGACAACAACCCATGTCCTGCGCGCCCTA
CGGTCACAGTAACTCGATCATGTGCTTGCCCAGGCTTCACAACTG
Found at i:150112 original size:72 final size:72
Alignment explanation
Indices: 150024--150200 Score: 264
Period size: 72 Copynumber: 2.4 Consensus size: 72
150014 ATGTCCCAAA
* *
150024 CCCCAAGAGTGTCCTAAGCCTAAGGAGTGCCCCGTATGCCCAAAGCCTATGGAGTGTCCTAAGCC
1 CCCCAA-A-TGTCCTAAGCCTAACGAGTGCCCCGTATGCCCAAAGCCTATGGAGTGTCCAAAGCC
150089 ACTGGAATG
64 ACTGGAATG
* *
150098 CCCCAAATGTCCTAAGCCCAACGAGTGCCCCGTATGCCCGAAGCCTATGGAGTGTCCAAAGCCAC
1 CCCCAAATGTCCTAAGCCTAACGAGTGCCCCGTATGCCCAAAGCCTATGGAGTGTCCAAAGCCAC
150163 TGGAATG
66 TGGAATG
* * **
150170 CCCGAAATGTCCCAAGCCTATTGAGTGCCCC
1 CCCCAAATGTCCTAAGCCTAACGAGTGCCCC
150201 AAGCCTTCAG
Statistics
Matches: 94, Mismatches: 9, Indels: 2
0.90 0.09 0.02
Matches are distributed among these distances:
72 87 0.93
73 1 0.01
74 6 0.06
ACGTcount: A:0.25, C:0.33, G:0.24, T:0.18
Consensus pattern (72 bp):
CCCCAAATGTCCTAAGCCTAACGAGTGCCCCGTATGCCCAAAGCCTATGGAGTGTCCAAAGCCAC
TGGAATG
Left flanking sequence: Indices 149524 -- 150023
CAGGTGTGACTTATATTCCGAAGCACCCCCACACCTATTACACCAAGTACTGCGGTACTAAACCT
GGCAAGATTTATGTGTATTGCACCAAGAAATGGGGCCAGCCTTGGAGAAAGTATTGTACCACGAA
GCATGGCCCCGTGGTCACGTATTGCACGACCACGGTGAAGCACTACCCAGAGGAGCCACATACTA
AGATCTATACCATTACCTACACTAAGCCGCTGGAATGCCATGGATGCTCTCACCCCAAGGAGTGC
CCTGCGTGCCCCAGGCCGCAGGAGTGCCCTGTTTGCCCGAAGCCTCAAGAATGCCCCAAACCAAA
GGAGTGTCCTAAGCCTAACGAGTGCCCGGCGTGCCCGAAGCCTAATGAGTGCCCGGTTTGCCCTA
AGCCTATGGAATGTCCCAAACCCCAAGAGTGTCCTAAGCCTAAGGAGTGCCCCGTGTGCCCTAAG
CCAAACGAGTGCCCCGTATGCCCAAAGCCTATGGAATGTCCCAAA
Right flanking sequence: Indices 150201 -- 150700
AAGCCTTCAGATTGTCCCATTTGCCCCAAACCTATTGAATGCCCTAAGCCAGTGGAATGTCCCAA
GTGCCCTATTTGCCCCAAGCCAGAGTGTCCTAAACCCCTGGAATGCCCTAAGCCACCGGAGTGTC
CCAAGCCGCTGGAGTGTCCCAAGTGTCCCAATTGCCCTGTTTGCCCCAAACCAGAGTGTCCTAAA
CCTCTGGAGTGCCCCAAGCCACCGGAGTGTCCCAAGCCACTGACTTGCATTCCTACCCCCATCTA
CGTAACGGTCACAAAAACTGAAACCATCACTAAGTGCGACAACAACCCATGTCCTGCGCGCCCTA
CGGTCACAGTAACTCGATCATGTGCTTGCCCAGGCTTCACAACTGTCACCGTACCTTGTGCTGCT
GAGAAGGATTGCAAGTCGTTTGTCACTTCCTACTTCCCGTGCAACTGCCCTGGGGGACCTGTGAC
AGTCACTGTTCCCGATAAATGCCCGCCATGTAAAGACTTAGTGAC
Found at i:150115 original size:45 final size:45
Alignment explanation
Indices: 150030--150115 Score: 102
Period size: 45 Copynumber: 1.9 Consensus size: 45
150020 CAAACCCCAA
* **
150030 GAGTGTCCTAAGCCTAAGGAGTGCCCCGTATGCCCAAAGCCTATG
1 GAGTGTCCTAAGCCTAAGGAATGCCCCAAATGCCCAAAGCCTATG
* * *
150075 GAGTGTCCTAAGCC-ACTGGAATGCCCCAAATGTCCTAAGCC
1 GAGTGTCCTAAGCCTA-AGGAATGCCCCAAATGCCCAAAGCC
150116 CAACGAGTGC
Statistics
Matches: 34, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
44 1 0.03
45 33 0.97
ACGTcount: A:0.26, C:0.30, G:0.24, T:0.20
Consensus pattern (45 bp):
GAGTGTCCTAAGCCTAAGGAATGCCCCAAATGCCCAAAGCCTATG
Left flanking sequence: Indices 149530 -- 150029
TGACTTATATTCCGAAGCACCCCCACACCTATTACACCAAGTACTGCGGTACTAAACCTGGCAAG
ATTTATGTGTATTGCACCAAGAAATGGGGCCAGCCTTGGAGAAAGTATTGTACCACGAAGCATGG
CCCCGTGGTCACGTATTGCACGACCACGGTGAAGCACTACCCAGAGGAGCCACATACTAAGATCT
ATACCATTACCTACACTAAGCCGCTGGAATGCCATGGATGCTCTCACCCCAAGGAGTGCCCTGCG
TGCCCCAGGCCGCAGGAGTGCCCTGTTTGCCCGAAGCCTCAAGAATGCCCCAAACCAAAGGAGTG
TCCTAAGCCTAACGAGTGCCCGGCGTGCCCGAAGCCTAATGAGTGCCCGGTTTGCCCTAAGCCTA
TGGAATGTCCCAAACCCCAAGAGTGTCCTAAGCCTAAGGAGTGCCCCGTGTGCCCTAAGCCAAAC
GAGTGCCCCGTATGCCCAAAGCCTATGGAATGTCCCAAACCCCAA
Right flanking sequence: Indices 150116 -- 150615
CAACGAGTGCCCCGTATGCCCGAAGCCTATGGAGTGTCCAAAGCCACTGGAATGCCCGAAATGTC
CCAAGCCTATTGAGTGCCCCAAGCCTTCAGATTGTCCCATTTGCCCCAAACCTATTGAATGCCCT
AAGCCAGTGGAATGTCCCAAGTGCCCTATTTGCCCCAAGCCAGAGTGTCCTAAACCCCTGGAATG
CCCTAAGCCACCGGAGTGTCCCAAGCCGCTGGAGTGTCCCAAGTGTCCCAATTGCCCTGTTTGCC
CCAAACCAGAGTGTCCTAAACCTCTGGAGTGCCCCAAGCCACCGGAGTGTCCCAAGCCACTGACT
TGCATTCCTACCCCCATCTACGTAACGGTCACAAAAACTGAAACCATCACTAAGTGCGACAACAA
CCCATGTCCTGCGCGCCCTACGGTCACAGTAACTCGATCATGTGCTTGCCCAGGCTTCACAACTG
TCACCGTACCTTGTGCTGCTGAGAAGGATTGCAAGTCGTTTGTCA
Found at i:150271 original size:45 final size:45
Alignment explanation
Indices: 150156--150271 Score: 101
Period size: 45 Copynumber: 2.6 Consensus size: 45
150146 GGAGTGTCCA
* * *
150156 AAGCCACTGGAATG-CCCGAAATGTCCCAAGCCTATTGAGTGCCCC
1 AAGCCACTGGAATGTCCC-AAATGCCCCAAACCTATTGAATGCCCC
* * * ** *
150201 AAGCC-TTCAGATTGTCCCATTTGCCCCAAACCTATTGAATGCCCT
1 AAGCCACT-GGAATGTCCCAAATGCCCCAAACCTATTGAATGCCCC
* *
150246 AAGCCAGTGGAATGTCCCAAGTGCCC
1 AAGCCACTGGAATGTCCCAAATGCCC
150272 TATTTGCCCC
Statistics
Matches: 54, Mismatches: 14, Indels: 6
0.73 0.19 0.08
Matches are distributed among these distances:
44 1 0.02
45 49 0.91
46 4 0.07
ACGTcount: A:0.26, C:0.33, G:0.20, T:0.22
Consensus pattern (45 bp):
AAGCCACTGGAATGTCCCAAATGCCCCAAACCTATTGAATGCCCC
Left flanking sequence: Indices 149656 -- 150155
ATGGCCCCGTGGTCACGTATTGCACGACCACGGTGAAGCACTACCCAGAGGAGCCACATACTAAG
ATCTATACCATTACCTACACTAAGCCGCTGGAATGCCATGGATGCTCTCACCCCAAGGAGTGCCC
TGCGTGCCCCAGGCCGCAGGAGTGCCCTGTTTGCCCGAAGCCTCAAGAATGCCCCAAACCAAAGG
AGTGTCCTAAGCCTAACGAGTGCCCGGCGTGCCCGAAGCCTAATGAGTGCCCGGTTTGCCCTAAG
CCTATGGAATGTCCCAAACCCCAAGAGTGTCCTAAGCCTAAGGAGTGCCCCGTGTGCCCTAAGCC
AAACGAGTGCCCCGTATGCCCAAAGCCTATGGAATGTCCCAAACCCCAAGAGTGTCCTAAGCCTA
AGGAGTGCCCCGTATGCCCAAAGCCTATGGAGTGTCCTAAGCCACTGGAATGCCCCAAATGTCCT
AAGCCCAACGAGTGCCCCGTATGCCCGAAGCCTATGGAGTGTCCA
Right flanking sequence: Indices 150272 -- 150771
TATTTGCCCCAAGCCAGAGTGTCCTAAACCCCTGGAATGCCCTAAGCCACCGGAGTGTCCCAAGC
CGCTGGAGTGTCCCAAGTGTCCCAATTGCCCTGTTTGCCCCAAACCAGAGTGTCCTAAACCTCTG
GAGTGCCCCAAGCCACCGGAGTGTCCCAAGCCACTGACTTGCATTCCTACCCCCATCTACGTAAC
GGTCACAAAAACTGAAACCATCACTAAGTGCGACAACAACCCATGTCCTGCGCGCCCTACGGTCA
CAGTAACTCGATCATGTGCTTGCCCAGGCTTCACAACTGTCACCGTACCTTGTGCTGCTGAGAAG
GATTGCAAGTCGTTTGTCACTTCCTACTTCCCGTGCAACTGCCCTGGGGGACCTGTGACAGTCAC
TGTTCCCGATAAATGCCCGCCATGTAAAGACTTAGTGACCAAGACTGTGGACGGATGTAATGTTT
GCACCCGTAGTGTTCCGACGGGGTGCACCAAGACGATAATATAGC
Found at i:150379 original size:96 final size:96
Alignment explanation
Indices: 150258--150433 Score: 298
Period size: 96 Copynumber: 1.8 Consensus size: 96
150248 GCCAGTGGAA
* *
150258 TGTCCCAAGTGCCCTATTTGCCCCAAGCCAGAGTGTCCTAAACCCCTGGAATGCCCTAAGCCACC
1 TGTCCCAAGTGCCCTATTTGCCCCAAACCAGAGTGTCCTAAACCCCTGGAATGCCCCAAGCCACC
150323 GGAGTGTCCCAAGCCGCTGGAGTGTCCCAAG
66 GGAGTGTCCCAAGCCGCTGGAGTGTCCCAAG
* * * *
150354 TGTCCCAATTGCCCTGTTTGCCCCAAACCAGAGTGTCCTAAACCTCTGGAGTGCCCCAAGCCACC
1 TGTCCCAAGTGCCCTATTTGCCCCAAACCAGAGTGTCCTAAACCCCTGGAATGCCCCAAGCCACC
150419 GGAGTGTCCCAAGCC
66 GGAGTGTCCCAAGCC
150434 ACTGACTTGC
Statistics
Matches: 74, Mismatches: 6, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
96 74 1.00
ACGTcount: A:0.22, C:0.36, G:0.23, T:0.19
Consensus pattern (96 bp):
TGTCCCAAGTGCCCTATTTGCCCCAAACCAGAGTGTCCTAAACCCCTGGAATGCCCCAAGCCACC
GGAGTGTCCCAAGCCGCTGGAGTGTCCCAAG
Left flanking sequence: Indices 149758 -- 150257
ATGGATGCTCTCACCCCAAGGAGTGCCCTGCGTGCCCCAGGCCGCAGGAGTGCCCTGTTTGCCCG
AAGCCTCAAGAATGCCCCAAACCAAAGGAGTGTCCTAAGCCTAACGAGTGCCCGGCGTGCCCGAA
GCCTAATGAGTGCCCGGTTTGCCCTAAGCCTATGGAATGTCCCAAACCCCAAGAGTGTCCTAAGC
CTAAGGAGTGCCCCGTGTGCCCTAAGCCAAACGAGTGCCCCGTATGCCCAAAGCCTATGGAATGT
CCCAAACCCCAAGAGTGTCCTAAGCCTAAGGAGTGCCCCGTATGCCCAAAGCCTATGGAGTGTCC
TAAGCCACTGGAATGCCCCAAATGTCCTAAGCCCAACGAGTGCCCCGTATGCCCGAAGCCTATGG
AGTGTCCAAAGCCACTGGAATGCCCGAAATGTCCCAAGCCTATTGAGTGCCCCAAGCCTTCAGAT
TGTCCCATTTGCCCCAAACCTATTGAATGCCCTAAGCCAGTGGAA
Right flanking sequence: Indices 150434 -- 150933
ACTGACTTGCATTCCTACCCCCATCTACGTAACGGTCACAAAAACTGAAACCATCACTAAGTGCG
ACAACAACCCATGTCCTGCGCGCCCTACGGTCACAGTAACTCGATCATGTGCTTGCCCAGGCTTC
ACAACTGTCACCGTACCTTGTGCTGCTGAGAAGGATTGCAAGTCGTTTGTCACTTCCTACTTCCC
GTGCAACTGCCCTGGGGGACCTGTGACAGTCACTGTTCCCGATAAATGCCCGCCATGTAAAGACT
TAGTGACCAAGACTGTGGACGGATGTAATGTTTGCACCCGTAGTGTTCCGACGGGGTGCACCAAG
ACGATAATATAGCCGCTGTGGTCTAATAACCCCACCGGTAATACCCATTTCGGTTTTCTTCTTTA
CTGCCTGTTTTGTTCGACATAACCTGTGACCGAACTGCCTGTATTTTTATTACATGTTTTAGCAC
TTGAACTCGCGTAGTAGTTTACGAGAAACGAGCCCTGGCCGACGT
Found at i:150422 original size:18 final size:18
Alignment explanation
Indices: 150401--150435 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
150391 CTAAACCTCT
150401 GGAGTGCCCCAAGCCACC
1 GGAGTGCCCCAAGCCACC
*
150419 GGAGTGTCCCAAGCCAC
1 GGAGTGCCCCAAGCCAC
150436 TGACTTGCAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.23, C:0.40, G:0.29, T:0.09
Consensus pattern (18 bp):
GGAGTGCCCCAAGCCACC
Left flanking sequence: Indices 149901 -- 150400
CCGGTTTGCCCTAAGCCTATGGAATGTCCCAAACCCCAAGAGTGTCCTAAGCCTAAGGAGTGCCC
CGTGTGCCCTAAGCCAAACGAGTGCCCCGTATGCCCAAAGCCTATGGAATGTCCCAAACCCCAAG
AGTGTCCTAAGCCTAAGGAGTGCCCCGTATGCCCAAAGCCTATGGAGTGTCCTAAGCCACTGGAA
TGCCCCAAATGTCCTAAGCCCAACGAGTGCCCCGTATGCCCGAAGCCTATGGAGTGTCCAAAGCC
ACTGGAATGCCCGAAATGTCCCAAGCCTATTGAGTGCCCCAAGCCTTCAGATTGTCCCATTTGCC
CCAAACCTATTGAATGCCCTAAGCCAGTGGAATGTCCCAAGTGCCCTATTTGCCCCAAGCCAGAG
TGTCCTAAACCCCTGGAATGCCCTAAGCCACCGGAGTGTCCCAAGCCGCTGGAGTGTCCCAAGTG
TCCCAATTGCCCTGTTTGCCCCAAACCAGAGTGTCCTAAACCTCT
Right flanking sequence: Indices 150436 -- 150935
TGACTTGCATTCCTACCCCCATCTACGTAACGGTCACAAAAACTGAAACCATCACTAAGTGCGAC
AACAACCCATGTCCTGCGCGCCCTACGGTCACAGTAACTCGATCATGTGCTTGCCCAGGCTTCAC
AACTGTCACCGTACCTTGTGCTGCTGAGAAGGATTGCAAGTCGTTTGTCACTTCCTACTTCCCGT
GCAACTGCCCTGGGGGACCTGTGACAGTCACTGTTCCCGATAAATGCCCGCCATGTAAAGACTTA
GTGACCAAGACTGTGGACGGATGTAATGTTTGCACCCGTAGTGTTCCGACGGGGTGCACCAAGAC
GATAATATAGCCGCTGTGGTCTAATAACCCCACCGGTAATACCCATTTCGGTTTTCTTCTTTACT
GCCTGTTTTGTTCGACATAACCTGTGACCGAACTGCCTGTATTTTTATTACATGTTTTAGCACTT
GAACTCGCGTAGTAGTTTACGAGAAACGAGCCCTGGCCGACGTTT
Found at i:151252 original size:12 final size:12
Alignment explanation
Indices: 151237--151306 Score: 95
Period size: 12 Copynumber: 5.8 Consensus size: 12
151227 AGACCGAACA
151237 CAAGAAGGACGC
1 CAAGAAGGACGC
151249 CAAGAAGGACGC
1 CAAGAAGGACGC
151261 CAAGAAGGACGC
1 CAAGAAGGACGC
**
151273 CAAGAAGGATTC
1 CAAGAAGGACGC
* **
151285 TAAGAAGGACAA
1 CAAGAAGGACGC
151297 CAAGAAGGAC
1 CAAGAAGGAC
151307 AAGAAGGAGA
Statistics
Matches: 51, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
12 51 1.00
ACGTcount: A:0.46, C:0.20, G:0.30, T:0.04
Consensus pattern (12 bp):
CAAGAAGGACGC
Left flanking sequence: Indices 150737 -- 151236
TGTTCCGACGGGGTGCACCAAGACGATAATATAGCCGCTGTGGTCTAATAACCCCACCGGTAATA
CCCATTTCGGTTTTCTTCTTTACTGCCTGTTTTGTTCGACATAACCTGTGACCGAACTGCCTGTA
TTTTTATTACATGTTTTAGCACTTGAACTCGCGTAGTAGTTTACGAGAAACGAGCCCTGGCCGAC
GTTTCCACTCCACGAAATCGGCTGGATGCAGTCTGTGCGGCTCGCGCGCAGGCCGCCCATCGCAT
TAAGAGAGTGCGATGAGAAGGCCAAAAACCAGTTCCGCCCACGATGTCGATGAAATTAGACTTGT
CGCTGCTAAAAGACAAGGTTAAGTCCAAGTTGGAAGCTTCTGAGAAGAAGGGCGAGGCCAAAAAA
GCTCGCTCGGCTTCGGACAAGGATAAGAAGCTGAAGGACGACAGAAAGGAGAAGGACGAGGACAA
GAAGAGCAAGAAGAACGACAAGAAAGAGGACAAGAAGACCGAACA
Right flanking sequence: Indices 151307 -- 151806
AAGAAGGAGAAGAAGGAGGTGAAGTTTGAGGAACCCAAAGAAGAAGAAGAGGCAGCGTCAAGCGC
TCTTCGCGAAGAAGCCATGGCCCTCGGGGCCACCGAAGAGGACTTGAAGCTCATTGAGGGGCTCG
CGGACTCTGACTCCGAGCAAGAGTTTGAGCTGAAGGGTGACGACAAGCTGTTGCAAGCTGACTTA
GCCAAGTTCTACCAGGGGATCGGTTTCTCTGGCAACGCCGAGGTGGTGGACGACGACGAGGCCTC
TGAGGCTGAGGATGCGTCTGACGACGAACCGGCGCCAAAAAAAGACGGCTCGGGCTCTAAGGCGG
AAGAGTCCGAGGTCCTGAAGAAGGCCGCCGACAAGGCCGCGCAGAAGGAGGCCAAGCGGGCCGAG
AAGAAGGCGCAGAAGGCCGAAGCCAAGGCTAAGCGGGCTGAGGAGAAGGCTGCGAAGGAGAAGGA
GAAGGAGGAGGCCAAGTCTGAGAACGAGAAGGCGTTGGAGGCGAA
Found at i:151308 original size:12 final size:12
Alignment explanation
Indices: 151187--151306 Score: 79
Period size: 12 Copynumber: 10.0 Consensus size: 12
151177 GAAGGACGAG
151187 GACAAGAA-GA-
1 GACAAGAAGGAC
*
151197 G-CAAGAAGAAC
1 GACAAGAAGGAC
* *
151208 GACAAGAAAGAG
1 GACAAGAAGGAC
151220 GACAAGAA-GACC
1 GACAAGAAGGA-C
151232 GAACACAAGAAGGAC
1 G---ACAAGAAGGAC
*
151247 GCCAAGAAGGAC
1 GACAAGAAGGAC
*
151259 GCCAAGAAGGAC
1 GACAAGAAGGAC
*
151271 GCCAAGAAGGA-
1 GACAAGAAGGAC
**
151282 TTCTAAGAAGGAC
1 GAC-AAGAAGGAC
*
151295 AACAAGAAGGAC
1 GACAAGAAGGAC
151307 AAGAAGGAGA
Statistics
Matches: 90, Mismatches: 10, Indels: 18
0.76 0.08 0.15
Matches are distributed among these distances:
9 6 0.07
10 2 0.02
11 4 0.04
12 66 0.73
13 1 0.01
15 9 0.10
16 2 0.02
ACGTcount: A:0.50, C:0.18, G:0.29, T:0.03
Consensus pattern (12 bp):
GACAAGAAGGAC
Left flanking sequence: Indices 150687 -- 151186
AAAGACTTAGTGACCAAGACTGTGGACGGATGTAATGTTTGCACCCGTAGTGTTCCGACGGGGTG
CACCAAGACGATAATATAGCCGCTGTGGTCTAATAACCCCACCGGTAATACCCATTTCGGTTTTC
TTCTTTACTGCCTGTTTTGTTCGACATAACCTGTGACCGAACTGCCTGTATTTTTATTACATGTT
TTAGCACTTGAACTCGCGTAGTAGTTTACGAGAAACGAGCCCTGGCCGACGTTTCCACTCCACGA
AATCGGCTGGATGCAGTCTGTGCGGCTCGCGCGCAGGCCGCCCATCGCATTAAGAGAGTGCGATG
AGAAGGCCAAAAACCAGTTCCGCCCACGATGTCGATGAAATTAGACTTGTCGCTGCTAAAAGACA
AGGTTAAGTCCAAGTTGGAAGCTTCTGAGAAGAAGGGCGAGGCCAAAAAAGCTCGCTCGGCTTCG
GACAAGGATAAGAAGCTGAAGGACGACAGAAAGGAGAAGGACGAG
Right flanking sequence: Indices 151307 -- 151806
AAGAAGGAGAAGAAGGAGGTGAAGTTTGAGGAACCCAAAGAAGAAGAAGAGGCAGCGTCAAGCGC
TCTTCGCGAAGAAGCCATGGCCCTCGGGGCCACCGAAGAGGACTTGAAGCTCATTGAGGGGCTCG
CGGACTCTGACTCCGAGCAAGAGTTTGAGCTGAAGGGTGACGACAAGCTGTTGCAAGCTGACTTA
GCCAAGTTCTACCAGGGGATCGGTTTCTCTGGCAACGCCGAGGTGGTGGACGACGACGAGGCCTC
TGAGGCTGAGGATGCGTCTGACGACGAACCGGCGCCAAAAAAAGACGGCTCGGGCTCTAAGGCGG
AAGAGTCCGAGGTCCTGAAGAAGGCCGCCGACAAGGCCGCGCAGAAGGAGGCCAAGCGGGCCGAG
AAGAAGGCGCAGAAGGCCGAAGCCAAGGCTAAGCGGGCTGAGGAGAAGGCTGCGAAGGAGAAGGA
GAAGGAGGAGGCCAAGTCTGAGAACGAGAAGGCGTTGGAGGCGAA
Found at i:162618 original size:18 final size:18
Alignment explanation
Indices: 162591--162630 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
162581 AGTAGAGCAC
*
162591 AAGC-ACGAGTAGGGTGG
1 AAGCAACGAGTAAGGTGG
*
162608 AAGCAACGAGTAAGGTTG
1 AAGCAACGAGTAAGGTGG
162626 AAGCA
1 AAGCA
162631 GTGTATCCTG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
17 4 0.20
18 16 0.80
ACGTcount: A:0.38, C:0.12, G:0.38, T:0.12
Consensus pattern (18 bp):
AAGCAACGAGTAAGGTGG
Left flanking sequence: Indices 162091 -- 162590
CAACCTGGTGCTGGGCGCCGACGACTTGTTTTTCACCGGCGAGTTTTACCCTGTGCTCGAGATGG
ACGAGGCCGATGGCGACGACGACTTGGCGAAGCAGTTGCAGCAGGAGGAGGACGCGGCGTTGGCG
CGCGAGGTCCAGGCCAACTACGACGCGGCGTCCAAGCGTCCTGGGCTGAAGCGGTCGCGGATGAC
CATGCGGCGCAAAGACCGCCAGGCCCACGAGCAGACGCCGATGGTGCTTGACGCCAGCGACACCG
GAGACCTGATTATTCCCAAACCCAAGCCGGTGACGGGTCCGGCGAAACAGACCGAGCTGGCCCCG
GCCCCCGTGGAGACGAAAGAGAAGAACGGATGCATGGGATGTGTAATTCAGTAGTAATGTAATGA
GGAAGAGAAGGGTTGAGGAAGCGAAAGGAAGAAGATGTGAGGAAAGCGAGTGGAAACAGAGAGTA
TCTTGAGTGAAGCGGAGCTCAGGGGTGAGACAACGAGTAGAGCAC
Right flanking sequence: Indices 162631 -- 163130
GTGTATCCTGAGTGAAGTAGTGATCTATAAAAACAGAGTAAACTAGGTAGAATCTGAAAGTAACC
GGTTGGAATGAGATAGTGAGAGAATACTTAGGAATGTGAGAGTATCCCCTTTCAACCCTCCCCTT
TCAACCCACTCGTCAATTCGAACCGCGCTTTTCTACCATTTCACAGAAACCCTCTCCCGTTTTTC
TCTATTGTCGTATTATCATGCTCGTGTCTATATTACAGCTCGGCGAAGTGCTCGTCGAGATCGTC
CTCGGCCTCATCGTCGTCGGCCTCGTACTCCATGGGGTCGTACTCCGACCGCACCGCGTCGCTCT
TGCGCAACTCGTCCGTCGACGGCTCCCGGAGCTTAAAGTTGATCTGGTCGATCGTCAGGTCGCGC
AAAAACCGGTTCACCTCGGTGTTGGTGCTGGTACGGTACTTCTTCAAGTCGATGCGGCCCAGCAC
CGGGTAGTAGTACGCCGCCTTGCGCTTGCCGCCCTCGGTGGCAAA
Found at i:162759 original size:14 final size:14
Alignment explanation
Indices: 162740--162767 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
162730 TGTGAGAGTA
162740 TCCCCTTTCAACCC
1 TCCCCTTTCAACCC
162754 TCCCCTTTCAACCC
1 TCCCCTTTCAACCC
162768 ACTCGTCAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.14, C:0.57, G:0.00, T:0.29
Consensus pattern (14 bp):
TCCCCTTTCAACCC
Left flanking sequence: Indices 162240 -- 162739
ACGACGCGGCGTCCAAGCGTCCTGGGCTGAAGCGGTCGCGGATGACCATGCGGCGCAAAGACCGC
CAGGCCCACGAGCAGACGCCGATGGTGCTTGACGCCAGCGACACCGGAGACCTGATTATTCCCAA
ACCCAAGCCGGTGACGGGTCCGGCGAAACAGACCGAGCTGGCCCCGGCCCCCGTGGAGACGAAAG
AGAAGAACGGATGCATGGGATGTGTAATTCAGTAGTAATGTAATGAGGAAGAGAAGGGTTGAGGA
AGCGAAAGGAAGAAGATGTGAGGAAAGCGAGTGGAAACAGAGAGTATCTTGAGTGAAGCGGAGCT
CAGGGGTGAGACAACGAGTAGAGCACAAGCACGAGTAGGGTGGAAGCAACGAGTAAGGTTGAAGC
AGTGTATCCTGAGTGAAGTAGTGATCTATAAAAACAGAGTAAACTAGGTAGAATCTGAAAGTAAC
CGGTTGGAATGAGATAGTGAGAGAATACTTAGGAATGTGAGAGTA
Right flanking sequence: Indices 162768 -- 163267
ACTCGTCAATTCGAACCGCGCTTTTCTACCATTTCACAGAAACCCTCTCCCGTTTTTCTCTATTG
TCGTATTATCATGCTCGTGTCTATATTACAGCTCGGCGAAGTGCTCGTCGAGATCGTCCTCGGCC
TCATCGTCGTCGGCCTCGTACTCCATGGGGTCGTACTCCGACCGCACCGCGTCGCTCTTGCGCAA
CTCGTCCGTCGACGGCTCCCGGAGCTTAAAGTTGATCTGGTCGATCGTCAGGTCGCGCAAAAACC
GGTTCACCTCGGTGTTGGTGCTGGTACGGTACTTCTTCAAGTCGATGCGGCCCAGCACCGGGTAG
TAGTACGCCGCCTTGCGCTTGCCGCCCTCGGTGGCAAACTTGATCGCCAACTCCTCGTTGGGCTT
GGGGTTGCGGGTGAACCGCATGTCGTAGTTCTTTTGGTGGCGGAACGTGAACTCCAGCTCCTCCA
GCCGCTCGGGCTGCTCCTTCTCCTTCAGGTTGAGCTTCAGCGCCA
Found at i:162903 original size:15 final size:15
Alignment explanation
Indices: 162885--162914 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
162875 GCTCGTCGAG
162885 ATCGTCCTCGGCCTC
1 ATCGTCCTCGGCCTC
*
162900 ATCGTCGTCGGCCTC
1 ATCGTCCTCGGCCTC
162915 GTACTCCATG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.07, C:0.43, G:0.23, T:0.27
Consensus pattern (15 bp):
ATCGTCCTCGGCCTC
Left flanking sequence: Indices 162385 -- 162884
GGGTCCGGCGAAACAGACCGAGCTGGCCCCGGCCCCCGTGGAGACGAAAGAGAAGAACGGATGCA
TGGGATGTGTAATTCAGTAGTAATGTAATGAGGAAGAGAAGGGTTGAGGAAGCGAAAGGAAGAAG
ATGTGAGGAAAGCGAGTGGAAACAGAGAGTATCTTGAGTGAAGCGGAGCTCAGGGGTGAGACAAC
GAGTAGAGCACAAGCACGAGTAGGGTGGAAGCAACGAGTAAGGTTGAAGCAGTGTATCCTGAGTG
AAGTAGTGATCTATAAAAACAGAGTAAACTAGGTAGAATCTGAAAGTAACCGGTTGGAATGAGAT
AGTGAGAGAATACTTAGGAATGTGAGAGTATCCCCTTTCAACCCTCCCCTTTCAACCCACTCGTC
AATTCGAACCGCGCTTTTCTACCATTTCACAGAAACCCTCTCCCGTTTTTCTCTATTGTCGTATT
ATCATGCTCGTGTCTATATTACAGCTCGGCGAAGTGCTCGTCGAG
Right flanking sequence: Indices 162915 -- 163414
GTACTCCATGGGGTCGTACTCCGACCGCACCGCGTCGCTCTTGCGCAACTCGTCCGTCGACGGCT
CCCGGAGCTTAAAGTTGATCTGGTCGATCGTCAGGTCGCGCAAAAACCGGTTCACCTCGGTGTTG
GTGCTGGTACGGTACTTCTTCAAGTCGATGCGGCCCAGCACCGGGTAGTAGTACGCCGCCTTGCG
CTTGCCGCCCTCGGTGGCAAACTTGATCGCCAACTCCTCGTTGGGCTTGGGGTTGCGGGTGAACC
GCATGTCGTAGTTCTTTTGGTGGCGGAACGTGAACTCCAGCTCCTCCAGCCGCTCGGGCTGCTCC
TTCTCCTTCAGGTTGAGCTTCAGCGCCAACTCGCGCGCGGTGTCGCCGTCGGCCACCTCAAACAA
CGAGATCCACTCGCCGTCGGCAGAGGTGATGGGGCGGAAAATCGCCGTGCGCAACTGGTCGCCCG
CCTCCTGGTACTTTTCCGGCCCGAGCTCCCGCAGCACCGACGCCA
Found at i:164237 original size:12 final size:12
Alignment explanation
Indices: 164205--164237 Score: 57
Period size: 12 Copynumber: 2.8 Consensus size: 12
164195 GTTTGGGGGG
*
164205 TTGGTGGGGCTT
1 TTGGTGGGTCTT
164217 TTGGTGGGTCTT
1 TTGGTGGGTCTT
164229 TTGGTGGGT
1 TTGGTGGGT
164238 TGTGGTGGAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.00, C:0.06, G:0.48, T:0.45
Consensus pattern (12 bp):
TTGGTGGGTCTT
Left flanking sequence: Indices 163705 -- 164204
TTCAAGTTGGTGATGCCTGCGTCCCGCAACAACTCCCGGTCCGCCGGGTGCAACTTGGCGGGCCC
GCCGTCCACGGCGGAGCCTACCGCGGCCACCTTGTCCTCTTCAAGAAACCCGGTGTTGTGGATCA
AGTTGAGCGGGAGCTCTGGGTGCGCCATCAACGCCGTGAAGTTTTCCAGGCGGAACAACAGCAGC
ATCAACTGGTCGCCCTCGCGCTTCTGCGACGTGGGCTCGGTGAGATGGTAGTGGAGGAACTTGGG
GTTGAGCGGGGGCGGCGGGAGGTTGTTTTGGTACCGCACCTTGGCGATGTAGTCCTGGCGTACCG
GCTTGGACATCGTTGGTGGTATGGTCCTGGTGGTTTTGATTTTTCACCGCGAACACCTGTGCAGC
AGGGGTGGGAGGTGGTGGATGGGAGGACGGAGAACGAAGTGTGGGTGTAGTGGAGGTTGTAGGGG
TAACCGCGGAAGCGTAGTAAGCCAAACGGTTGGGTGTTTGGGGGG
Right flanking sequence: Indices 164238 -- 164737
TGTGGTGGATTGTGGTGGTTTGGGTAGTACGCTGTGCGTGCGAAGGTATAGGCAAACTAATCCAA
GCAAGTCATGTCTGTTCTCGCTAGCTACGTAAATGATTAGTCTCAACGGCGTGTCAACGGCGTGA
CTCTTTTACCTCATTCGCCACCTCGTAGTTCCCCTTACATTGTGTCTTTTGCAGCCATGACGCGT
ATGCAATGCAGACACCACCACCTGTCACAAGTCCAGGCGAGACGAAGCATAATGAACCGTCTAAA
CCAGGAACACTTAATAAATACTTCAATACTCAGGGTCACTCTAACTCGGAAAGCCTGGCTTATTC
ATATACTACTTAACCCTCGTACTGGGTGGGGTCCTTGCCGTCCCAGCAGATCACCTCGTGCGAGT
TGGGCTTGTTCAACTTGGTCAACACCTCGGTGTCCAAGTCGACCTTGCCAAGGAACCGCTCCACG
GTGTCGCTGTCGCCACTGCCCTTGGGGAGCACGTTGAAGTTCTCA
Found at i:168974 original size:11 final size:14
Alignment explanation
Indices: 168933--168969 Score: 74
Period size: 14 Copynumber: 2.6 Consensus size: 14
168923 AGGAGAGCCA
168933 AGCACAAAGAGGCC
1 AGCACAAAGAGGCC
168947 AGCACAAAGAGGCC
1 AGCACAAAGAGGCC
168961 AGCACAAAG
1 AGCACAAAG
168970 CCAGCCACTC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.46, C:0.27, G:0.27, T:0.00
Consensus pattern (14 bp):
AGCACAAAGAGGCC
Left flanking sequence: Indices 168433 -- 168932
TGAGGTGCCTGAATTTGTCGCCAAGACCGACTTTGCTACGCTCCAGCCCCGCGTCGACTTCAACA
AGGCGGCGTCGGAAATCATTTCCAAGGAGGAGAAGCGCCAATAATAGTTTACTCTTGTATATAGC
CCTAATGAGATAACGAATACCGCTCCTTTCCGAAACGAGTTCGCGAACAATAGACGCACGTCAAC
CACGAATAGGGGCGTGGCCATCCCCGCTCCGCGCCACCGGGTGCCCCTTCCCCGCTGCACCGAGC
AGTAGACGGTCACCTTTGACACCCTTTGTTCCGGGAGGAGGTCACTGCATACAGCAGCCCTAGTC
CGCTACCACCCCTGGAGAGGGGAAGAGTGGGGCTCGAGGTGGGGCGGCGCCAGGGTGGGTGTCTG
AAACTGGTTCATGTTGCGAACGCTGGCCGTCCGAGTCGGGGCAGTTTGTCAATAGGTCTCAGTGC
TCACTGAGGACGTAGACGGTAGGCACAAAGCGGCCAGGAGAGCCA
Right flanking sequence: Indices 168970 -- 169469
CCAGCCACTCTGGCCCATTAACAACTCTCCGTTCTCCACTCACCACCTCCACCATGAAGGCGTCA
ACGCTCACCCTGTTGCAACTGCTCCTGCACACGACCCGCGGTATACTATGCATCCACGGCGGTGG
TGAGACGACCGCCATGCTCCAGCTGAAACAGATATCCAAGGTGTTGGTCCAGGGGTTGACGCGGG
TGCCCGCCTCCCTGGGTCGCCAGCGCGATCCCGAAGACCCCCACGAGCACTTTGAACAGTCGGTG
TTGGAGACGCTGCCCCTCGCGGTGTCGTTACTCCTGCCCGAGGGGAACCCGCTCCTGACGGTGAC
CAACGACGCAGCGCTCAAGGAAACGGGCATCAGCAGCGACAACTTGCGCATTTTCCTGTTGTTGG
GTTACAACTATTTGCATCAGAACCCGCTGGAGGCCTGGGGCCTCATTGAGGTGGAAAAGAACTTG
GAGCTCATGGTGACGCGGTTGACGGTGGTGGTGGAGGGCGAGCCC
Found at i:174764 original size:15 final size:15
Alignment explanation
Indices: 174744--174778 Score: 70
Period size: 15 Copynumber: 2.3 Consensus size: 15
174734 GCTAAGTTCT
174744 AGCGTGAAGCGTGTC
1 AGCGTGAAGCGTGTC
174759 AGCGTGAAGCGTGTC
1 AGCGTGAAGCGTGTC
174774 AGCGT
1 AGCGT
174779 AAATAATAAG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.20, C:0.20, G:0.40, T:0.20
Consensus pattern (15 bp):
AGCGTGAAGCGTGTC
Left flanking sequence: Indices 174244 -- 174743
ATCGACTGCCGCTGTGCCTAATTGTCTAAAGCCTGATTACGGGCTTCTTCACACAAAAGCGAGCC
GGACAAAGACCCCAGCCTGGCTGTCTCGGTGAACAATAAGGCTGTCGCTATATTTAGCCCCTATC
CCTTTTCGCGCGTAATTACGCATGAGAACCGTTAGTTGATCCGGAGCGTGGCTTAGGGTAAGGCA
CCGTGGCGGGGAACGCGAAAGGAGTCGAAGGGGTTGCAGCCGTTTGAATCGGCTCTGGAGGCCCG
GGAGGCACGAGATCAGCGGGTTTGACGTTTTCCTGTTTCAACTTGCTCCATTGTTGGACCTTACT
CGCTTGCGCCTCATATGCGTCCAGCTGAAAGAGTAGTTTACATCAAACGTGTTGGGACAATACCA
AACAAACGTTCGGCTGTGTAGTAAGGGGTTGGCTCCACAAAACGCGGGGCTGGTAGTGTGCGTGT
AGTAGGGGGTGAGATGGTAGCCGTAAGGGTTGTTGGCTAAGTTCT
Right flanking sequence: Indices 174779 -- 175278
AAATAATAAGCTGTCAAGGGTTGATCGTCGCTCTCCATACACTCCAGTCCCCCAAAACGCCCTAA
ATCAACCCTTCCAGAACCCCTATAACCAGCAACGAAAACAATCGGCCCCCAGGCTTTGTATGCAA
CAATGTAACGGAGTCAAACCCAACGTGACCCGTGGCCGTATCCTCCCCGGTCCGCAAGCACCGCC
CATATCACCGCCACATCACCGCCCCATCACCCCCCACGTCCTTTCCAGTTCCCATTTTCACTTTC
ACTCCATACTCGAGGTCATCTAATTCATTAATATACATAGTGATTAATCCGTTTCCATCTTGTCC
TCGTCGGCGGGCGCGGATTCGTCGGCAGGCGCCGCCTCGGTCTCGTCGGGCTTCGCGCTGTCGTC
GTTGTTGTCGTTGTCGTCGTCGTCATCGTCGTCGTCGTCGTCCCGGTTACGAGCGTTCGACACCG
AGTCCAACTTGTCCAACCACTGCTGCACCTCCTCGTCGTCGTAGA
Found at i:174984 original size:12 final size:12
Alignment explanation
Indices: 174967--175010 Score: 56
Period size: 11 Copynumber: 3.8 Consensus size: 12
174957 GGTCCGCAAG
*
174967 CACCGCCCATAT
1 CACCGCCCACAT
174979 CACCG-CCACAT
1 CACCGCCCACAT
174990 CACCGCCC-CAT
1 CACCGCCCACAT
*
175001 CACCCCCCAC
1 CACCGCCCAC
175011 GTCCTTTCCA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
11 20 0.71
12 8 0.29
ACGTcount: A:0.23, C:0.61, G:0.07, T:0.09
Consensus pattern (12 bp):
CACCGCCCACAT
Left flanking sequence: Indices 174467 -- 174966
AGGGGTTGCAGCCGTTTGAATCGGCTCTGGAGGCCCGGGAGGCACGAGATCAGCGGGTTTGACGT
TTTCCTGTTTCAACTTGCTCCATTGTTGGACCTTACTCGCTTGCGCCTCATATGCGTCCAGCTGA
AAGAGTAGTTTACATCAAACGTGTTGGGACAATACCAAACAAACGTTCGGCTGTGTAGTAAGGGG
TTGGCTCCACAAAACGCGGGGCTGGTAGTGTGCGTGTAGTAGGGGGTGAGATGGTAGCCGTAAGG
GTTGTTGGCTAAGTTCTAGCGTGAAGCGTGTCAGCGTGAAGCGTGTCAGCGTAAATAATAAGCTG
TCAAGGGTTGATCGTCGCTCTCCATACACTCCAGTCCCCCAAAACGCCCTAAATCAACCCTTCCA
GAACCCCTATAACCAGCAACGAAAACAATCGGCCCCCAGGCTTTGTATGCAACAATGTAACGGAG
TCAAACCCAACGTGACCCGTGGCCGTATCCTCCCCGGTCCGCAAG
Right flanking sequence: Indices 175011 -- 175510
GTCCTTTCCAGTTCCCATTTTCACTTTCACTCCATACTCGAGGTCATCTAATTCATTAATATACA
TAGTGATTAATCCGTTTCCATCTTGTCCTCGTCGGCGGGCGCGGATTCGTCGGCAGGCGCCGCCT
CGGTCTCGTCGGGCTTCGCGCTGTCGTCGTTGTTGTCGTTGTCGTCGTCGTCATCGTCGTCGTCG
TCGTCCCGGTTACGAGCGTTCGACACCGAGTCCAACTTGTCCAACCACTGCTGCACCTCCTCGTC
GTCGTAGAGGGTGAACTCGGTGTCCTTGCCCACCACCGACACCGAGGTGTTTTTGTACGTGAGCT
CCACGTCCTGCGACAACGTGTCCCGCAACGCCTGCAACCCGTGCACAATCAACTCCTCCACCAGG
GCCAGCGCACGGATGGTGTCCAAGTTGCGCTCGAGATAGGTACGGGCGGCCTGCGAGCGGGCGCC
AATGGACGCGCCGTAGTACTCGAGCACCAGCCCCAGCGGCTGGAA
Found at i:175187 original size:3 final size:3
Alignment explanation
Indices: 175163--175210 Score: 60
Period size: 3 Copynumber: 16.0 Consensus size: 3
175153 GCTTCGCGCT
* * * *
175163 GTC GTC GTT GTT GTC GTT GTC GTC GTC GTC ATC GTC GTC GTC GTC GTC
1 GTC GTC GTC GTC GTC GTC GTC GTC GTC GTC GTC GTC GTC GTC GTC GTC
175211 CCGGTTACGA
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
3 39 1.00
ACGTcount: A:0.02, C:0.27, G:0.31, T:0.40
Consensus pattern (3 bp):
GTC
Left flanking sequence: Indices 174663 -- 175162
TGGCTCCACAAAACGCGGGGCTGGTAGTGTGCGTGTAGTAGGGGGTGAGATGGTAGCCGTAAGGG
TTGTTGGCTAAGTTCTAGCGTGAAGCGTGTCAGCGTGAAGCGTGTCAGCGTAAATAATAAGCTGT
CAAGGGTTGATCGTCGCTCTCCATACACTCCAGTCCCCCAAAACGCCCTAAATCAACCCTTCCAG
AACCCCTATAACCAGCAACGAAAACAATCGGCCCCCAGGCTTTGTATGCAACAATGTAACGGAGT
CAAACCCAACGTGACCCGTGGCCGTATCCTCCCCGGTCCGCAAGCACCGCCCATATCACCGCCAC
ATCACCGCCCCATCACCCCCCACGTCCTTTCCAGTTCCCATTTTCACTTTCACTCCATACTCGAG
GTCATCTAATTCATTAATATACATAGTGATTAATCCGTTTCCATCTTGTCCTCGTCGGCGGGCGC
GGATTCGTCGGCAGGCGCCGCCTCGGTCTCGTCGGGCTTCGCGCT
Right flanking sequence: Indices 175211 -- 175710
CCGGTTACGAGCGTTCGACACCGAGTCCAACTTGTCCAACCACTGCTGCACCTCCTCGTCGTCGT
AGAGGGTGAACTCGGTGTCCTTGCCCACCACCGACACCGAGGTGTTTTTGTACGTGAGCTCCACG
TCCTGCGACAACGTGTCCCGCAACGCCTGCAACCCGTGCACAATCAACTCCTCCACCAGGGCCAG
CGCACGGATGGTGTCCAAGTTGCGCTCGAGATAGGTACGGGCGGCCTGCGAGCGGGCGCCAATGG
ACGCGCCGTAGTACTCGAGCACCAGCCCCAGCGGCTGGAACTCGTACAAGTGGGGCCCCAGCTCG
TCAAACCCCAGCACCAACAACCCGACGCCGTAGGGACGCAGCCCGTACAGCTGGGTGTTCTCCTG
GGCCTTGTCGGCAATCAGCAACACCGCTCGCGACGTCGCCAACGGGCGGTTGAACGTCATCTTCT
CCTGCATCGCCAATTTGCGCAAATAGTTCAGCAACACCCGGGCGT
Found at i:176164 original size:12 final size:12
Alignment explanation
Indices: 176149--176196 Score: 69
Period size: 12 Copynumber: 4.0 Consensus size: 12
176139 GTTCATATTG
*
176149 TGGTTGGCTTGT
1 TGGTTGGTTTGT
*
176161 TGGTTGGTGTGT
1 TGGTTGGTTTGT
176173 TGGTTGGTTTGT
1 TGGTTGGTTTGT
*
176185 TCGTTGGTTTGT
1 TGGTTGGTTTGT
176197 AGGATAGGAT
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 32 1.00
ACGTcount: A:0.00, C:0.04, G:0.42, T:0.54
Consensus pattern (12 bp):
TGGTTGGTTTGT
Left flanking sequence: Indices 175649 -- 176148
GTTGAACGTCATCTTCTCCTGCATCGCCAATTTGCGCAAATAGTTCAGCAACACCCGGGCGTCGG
GGGCCAACCCGGCCAAGGCAATGCCCATGTGGTCGTCGATCTTGATGATCTTCTTCTGGTACGAG
CCCAACTCCTCAGCATTGCGCTTGAGCGCCACCAACACCACGTGTGTGGGCGAGGTGAGCCCCAC
GGCGGCCAGCCCCTGCTTGATGGCCTCCAACGCGTATTCCACCTGGAAAAGGCGGCCGGTGGGCA
GGTATGTCACCGAATCGTTATCGTAGTTGTTGCGGAACATGTGTGTCTCCAATTGGCAGCCTGGC
GAGTGGAATCGGGTGGGCACACGAGTATCTGGTTGGGCGCACTCAGTGGCGATTTTTCGCCTTTG
GTGCGGCGCGCGCACGTTCATAACGGTGATGGAGAGGAATGAACATAGAGGAATTAGGGGAGTGT
TTTCAGTATTTGTGTTGATTTTGTTGTTTATTTTTGTTCATATTG
Right flanking sequence: Indices 176197 -- 176696
AGGATAGGATTTCCATTGGATGTTGGTTAGTCTTTCCAGCCAACCTTGAGGAATTAGGAATGCAG
AGGGCTATATCGATCTATACGTTACTGAATGCTTTGGAGCTTTTCGATGGTGTACTGGTCCTGCT
GGTTGAACAACAGCGCAAACTTGTCGCTGCCAATCTGCTGCTGCACTTGCACCACGCACTCCTTG
AGGTACTGGGCTATGTTGGTCCGGTAGACGGGGTCCTTGTTCTGACACAAGCTGGCGTAGCGCAC
GCGCTCGCCGTGGGGTTTGATGTTCTCGTCGAGGTACGCGTAGTCGTCGATGTCCTCGTACGAGT
AGTCCTGGTGGTACGCCTCGACGATCCCCTCCATCAGCTCGTTCACCTCCTCGCAGAACAAGAAC
GTCTTGTGGACGATCTGGTTGAGTGCCATCCCACCCCACCCGGTGGGATCAGCACACACGGCGTA
GGACGCAAGCGCCAACAACCCCATCAAGTTGATCTTGCGGTTGCG
Found at i:202935 original size:18 final size:18
Alignment explanation
Indices: 202912--202947 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
202902 CCACTGCTGG
202912 CCCCGCCGCTGGTGCCGC
1 CCCCGCCGCTGGTGCCGC
*
202930 CCCCGCTGCTGGTGCCGC
1 CCCCGCCGCTGGTGCCGC
202948 TGCCACTGAG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.00, C:0.53, G:0.33, T:0.14
Consensus pattern (18 bp):
CCCCGCCGCTGGTGCCGC
Left flanking sequence: Indices 202412 -- 202911
CGCCCCGTCAAATTGCATTTTTCAATCGCAGCCGCATAAAGCATTTCGTTTCCATCAACACCCAT
GCCATGGATTTTTACCGAAAATGTGCACTAAAAGCCTGAAATCAGCTTCGCAAAGCATAGAATAA
CCTCTTACAACTTTCAACATCCACATGTACTTCTTCTATTACTCACTGGTGCTTGTATTCCCTCA
AAATTCAACCAAAATCTTAAACACGTGACCTTAGGGCTTGCCAACCCTAGCGTGCGCGCCCACTA
CGAGTGATTGATTTTTTTTCACTACGAAGCATATATACAATAAACCATGTCTGCCGAGGCTTCCG
TTTCGTACGCCGCTTTGATTTTGGCTGATGCCGGTGTTGAGATCACCGCTGACAACTTGTTGACC
GTCACCAAGGCCGCTGGTGCCACCGTTGACGACATCTGGGCCAACGTTTTCGCCAAGGCTTTGGA
GGGTAAGGACTTGAAGGAGATCCTTGCCGCTTTCTCCACTGCTGG
Right flanking sequence: Indices 202948 -- 203447
TGCCACTGAGGATGCTCCCGCTGAGGCTGAGGAGGAGGCCGCTGAGGAGTCTGACGACGACATGG
GGTTCGGCTTGTTCGACTAAACAATTTAGTAGATAATTTAATGTACTATAGGATTACGGAAATCA
TTGTAGCCTCAACGAGGACGTTGTAGGTACTTGAAACTTCCGGGTGGTTGCGCCAGGAAGTAGGT
GCAGCACGGGTTTAATATGGACTATTTGAAGTTAAGGTGAAATTGGGTTCCGAGCAAAGCCCGTG
ACCTTTACGTAGTCGTTTCAGAGCACACAACGCTTGGCTTGGCCGATGATTTATGCCGCTGCTAT
AACCACGGTTTCAGGATTGTGAAACGACAAAAGTTTTAACAACGGATAATTCTGGCGTGAGTGGG
GGCAGTAATAGTCCTGGTATACCGTCAGGTGTGGTTCTGACATGTTTAATGCTTCACTGTCATTG
CTCGTTTCACCTGCCATCAGCGGATATCGCTCGTAATCTTTCTGT
Found at i:226305 original size:21 final size:20
Alignment explanation
Indices: 226280--226325 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
226270 AATTGTAGTG
226280 GGGTGATACCAATTGGCGGGT
1 GGGTGATACCAA-TGGCGGGT
* * *
226301 GGGTGCTGCCCATGGCGGGT
1 GGGTGATACCAATGGCGGGT
226321 GGGTG
1 GGGTG
226326 CCTCCAAAGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
20 13 0.59
21 9 0.41
ACGTcount: A:0.11, C:0.17, G:0.50, T:0.22
Consensus pattern (20 bp):
GGGTGATACCAATGGCGGGT
Left flanking sequence: Indices 225780 -- 226279
TCACCGAGTACGACCGAGCAACCGACACCACCCGGGGGGCGATGCGGGCGGTCTGCGTGGTCATC
GGGGCCAATGCCGCTCTGGGAAGCGCAGCGGACATCATGGACGCCGCCGAACGGGTGCCGTGGAC
AACGGCGGGTCTGGCGAAGCGAAACATATTCGGAGGCAAGGTTGTTAGTTGATCTTGTTCGCACG
AAATTTAATTTTGTAGTTTTTTTCGTAGGCTGTTCCGGTGTACAACCACTGGCGGGGCTATAGTT
GTGATCTGGTACGGAGACGGCCGGAAGCACTAGGTGATTGTTGGGAGACGGGGCCAGATGAATTG
GCGCTACGTAAAAGGGTGCCAGTTTATTTTTACAGCGTGTACGGCTGGTTTTTCACCACCAACAG
CCGTCCCACGTTTTGCCACTGGTCGTGCGCCTGCCCGGCGGTTTCCCGGAGTCGGCTAACAACTA
GGCACGGGACTCACGACGACACGAAAAAGCATCGAAATTGTAGTG
Right flanking sequence: Indices 226326 -- 226825
CCTCCAAAGCCCTCTGGGGACGCCCCATCGGGCCGGATGACCGGCAACCGTTACGGTCTTGGCAG
TGTATGCGTACGAAGGCACGGTCTAAGGTGCATGGTGAGATGGCACTAAACAAACAAACTTCACG
CACAAGCAACATTACATGTCCAGACCCCGAGAACCGGTGTCCCCGTGGCATTTGCAACCGGTGTA
ATCGTGCATGGGGGTACATAACCACGAGCTAATCACGACGGACAATAGTAGAGATCTGAAACGGA
AAGAGGAAGCAAACAGTGGCACCAATTGCTCTGAATAGTTAACACGGAACGGCTCTTGTAAACAG
TTCTCTACAATTAGCCCAGTTCTGGGATCTCCCCACTAATACGATCAGTCTACAAAATGTGTCTC
GAACATGTCTCGATGTAAAGTGTCGGGAAAGTGCCTGGAAGCCCAAAACGACTAGGTTCCATCAA
TCTTAACTCTATCTATTATTCATTGTATACTTAAAAGAGACCGTC
Found at i:236651 original size:14 final size:15
Alignment explanation
Indices: 236621--236670 Score: 57
Period size: 15 Copynumber: 3.3 Consensus size: 15
236611 GGCTCCTGCG
236621 GGTGCTGCCTACCCA
1 GGTGCTGCCTACCCA
*
236636 GGTGCTG-CTCCCCA
1 GGTGCTGCCTACCCA
* *
236650 GGCCGCTGCCTACCCT
1 GG-TGCTGCCTACCCA
236666 GGTGC
1 GGTGC
236671 GGCGCCGGGA
Statistics
Matches: 28, Mismatches: 5, Indels: 4
0.76 0.14 0.11
Matches are distributed among these distances:
14 8 0.29
15 13 0.46
16 7 0.25
ACGTcount: A:0.08, C:0.42, G:0.30, T:0.20
Consensus pattern (15 bp):
GGTGCTGCCTACCCA
Left flanking sequence: Indices 236121 -- 236620
CACCAACCACCGCGTTCACCCGCTGCCGCCACCCCCGCCACGTCCGCCGTCGTCACCACGCCCAT
CACGTGACCGTGAGGTGACACGTCGATCTCACATTTTGTTTTTTTCAATCTCCACGTCTCACTAA
CCCAACAACACCCAGAAACATGTCGAAACGCAGAGCGTACCCGCAACCGCTGTACGCCGGTGGGA
TGGGCCCCGGTGCTGCCGGCCAGCCCCCCGTGGGCGGTCAATTTGGCTATGGCGCCGACCAGGCC
GCTCAGCAGATGCAGGGCATGAACCTTGGCCAGCCCCAGCAGCCCGCCTACGGGGCCCAGCCGGG
CTACGGTGCGCCCCAGACGCCTGTCCAGGCCAACGCCGCCTACGGCCAGCAGCAATTTGCCCAGC
CGCAAGCGCCCGCGGCCAACTACGACCAGTACTACCTGCAGGGAGCCAGTGGGCTGGCGACGCCT
CAGCAGGCCCACGCGGCGCCCTACGGGGTGGGCGCGGCTCCTGCG
Right flanking sequence: Indices 236671 -- 237170
GGCGCCGGGAGGCGCTCCGGGCTACGCCAGTGCCACTCCCGGGTACGGGCAGGGCCAGGGCGCGT
CGCCGCTCAACCAGATCTACCCGTGCGACTTGCTGCGGGAGTTGCCGCCGCCGATCTCCGACTTG
ACGCTTCCGCCGCCGCCGATCGTGTTGCCGCCCGGGCTGACCATCACCGCGCTGGAGACCGCCAA
CGCGTCGCCCGAGTACTTTAGACTGACGCTCAACGTGATCCCCACCAACCTGGGCCTTCTCAAGA
AGCTGAAGTTGCCGTTGGCGCTTGTGGTGAACCCCTACAACGCGTTGAAGGTGGAGGACGAGCAG
GTGCCGGTGACGCTGGACACCATTATTTCCCGGTGTCGCCGGTGTCGGGGTTACATCAACCCGTT
TGTCCAATGGGCAGAGAACGGGCGTCGCTGGCGGTGCAACTTCTGCAACCTCCTCAACGACGTGC
CGCTGGCGTTTGACTACGACGAGATCCTGGGCCAGGCCAAGAACC
Found at i:248238 original size:14 final size:14
Alignment explanation
Indices: 248219--248246 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
248209 TACAGGGCAG
248219 CATCCCTCATTCAC
1 CATCCCTCATTCAC
248233 CATCCCTCATTCAC
1 CATCCCTCATTCAC
248247 GACATTTAGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.21, C:0.50, G:0.00, T:0.29
Consensus pattern (14 bp):
CATCCCTCATTCAC
Left flanking sequence: Indices 247719 -- 248218
ATTGGAGGTATTGAACCTCAAGGACAAGACCGATCTCACGCTCCCCTGCGAGATCGACGGCACCA
TTCGGGTGCAATTCAACTTTGGCGGCGGGGCCCAGCTCGACATGCCCGTCAACGACTTAATCCGA
CGGTGGAACAACAAGTGCCAGTTGGGGGTGTACTCGCACAGCGAGCCGTACGTGGTGCTCGGCGA
TAACGTGTTGCGCCACGCCTACGTGGTCTACGATCAGGAAAAGTTTGAGATCCTGTTGGCCCCCA
TCATGTACACCCCCGAAACCGACACCCAGATGGTCGGCGCGGGCAAACCGGTCCCCGGCGCGTTG
CTGGCCCTGAACTACGAGGAGGTGGGCCAGATCTACACCGTGCTGCTGGTGCTGGAAGACAAGCC
GCGGCGGTCGGTGGGCAACTTGTTGAACCACGGCTACGCTGTCGGCCCGGGCTTCACTGCCTGGA
TCGCTGCATTGGTGATGCTTATCTAACCCGACACATACAGGGCAG
Right flanking sequence: Indices 248247 -- 248746
GACATTTAGTTCTTTTTATAGATTCTACACACGAGCACCGTTCTGCTCATTCTTTGATCGGTATG
TCAATAGCGCGTACGGCATTAGCGAGATCGGGTCGATGCCGACACAGCCCTGCCGACAACAAAGG
CCAGCATGCTCATAGCAACCAAATGCGTGCCATTCACACTACACTAATTTTCACACCACTCTAAA
TTCCCCACTTCCCCTCTGCGGCATTGCCACGTTTACGCGTGTGGTCGCATCGACACGAGCCCTGA
CACATAAGTCAAATCGAAAATCAACCCGCTGGTAGCATCATGAGTACGCAATACGGGATTGTTGT
CGACCTGGGCCTGCTGGGCAGTCGCCTTCAGATCTACCAATGGCAGTTTGATCCCGAAAAGGGCA
CCAGCTCACTCCCTGTGATCACCCACGACAAGGATTGGCTGAAGAAGATCACTCCCGGGGTGCTG
CTGTTTGAACACAAGCCCGATAAGGTGTGGCTGGACCACTACCGC
Found at i:254597 original size:12 final size:12
Alignment explanation
Indices: 254580--254615 Score: 72
Period size: 12 Copynumber: 3.0 Consensus size: 12
254570 GCGGAGCCCC
254580 GCCGCCTCAGCA
1 GCCGCCTCAGCA
254592 GCCGCCTCAGCA
1 GCCGCCTCAGCA
254604 GCCGCCTCAGCA
1 GCCGCCTCAGCA
254616 ACAGCTTGGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 24 1.00
ACGTcount: A:0.17, C:0.50, G:0.25, T:0.08
Consensus pattern (12 bp):
GCCGCCTCAGCA
Left flanking sequence: Indices 254080 -- 254579
CTGAAGTTGCTGGTGGTGAACGGCAAACGGGTGGTGGAAACCTACTACCTCACGCACACGCTAAT
CAACGAGTACAGCCACCACCCGCTGCTGCCGCCGCCGGACCCGCAAAACCCCGGTGCCGTCAAGG
AGCGGGTGTTGGTGATTTGCGCCAAGCACCTGACGGGACGCATCATGATCCAGAAGGGCAAGTAC
AACGACGCAAAGCACTTGTACCAGATCGGGCGCACGTGGGACATGGACGAGTTGCGTGCGATTAA
GCGGGTGCTGCCTGACGAGATGGTGTTGACCCTCAACAAGGACTACTACTGGAAGATGAACGAGG
GCCCCGATCGCACGTTGCGGTTCATCAAGGCGTTGGCCAGCTACTACGGGTCGTACACGGGCAAG
TACCCGCAGTTGGTTGGGGTAACCGAGGCCGAGTTGCGGTTGCCACGGGTGCCGGCGAAAATGCC
CATTGGCGGTGACGAGGACGCCGCATCGATAGCCAGCGGAGCCCC
Right flanking sequence: Indices 254616 -- 255115
ACAGCTTGGAGGCGCAGCCAACATCAAAGCGATGAAGCCTCCGCCTCCGCGCGCCGGTCCGTCGG
CAGCGTTCGCTCCTCTGCCTACGGGTACCCCGACAAAGAACCACGCGTACCTGCCGTTTGGCCAG
CCGCCCGTGGAAACGCCCGGCGACGACGACGCCCTGTTTGACTTTGGCGGCCCGCTGGCGTACGC
CGAGCCCGCCGACCGCCGTGGCCCGTCGCAGGGGTCCATGGGCCGCGACGCCCTGCTGTACCTGA
TCCACGAGTACGTCCAGAACGACGAGGTGGCGCAAAAGCTGCCGTTGAGACTGAGTTTTGGCCAC
CAACGCCAGCAACTGCGCCAGCTGTTGCAGCTGCGCCACTCGCTGTTGGGCCAGCTGCCGGTGGC
GTCGCGGTTCGACGACAGTGCCCGCAAGAGCATGGACGTGGTCCAGCAGTTTGGCCAGCTGTTGC
CTGACCGGTCGCCTCTCACTCAACAACTGGCCCACGACGACATCA
Found at i:263544 original size:15 final size:15
Alignment explanation
Indices: 263524--263557 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
263514 TCTCTCTGAT
263524 CGTCTCTCAGCTTCG
1 CGTCTCTCAGCTTCG
**
263539 CGTCTCTCTTCTTCG
1 CGTCTCTCAGCTTCG
263554 CGTC
1 CGTC
263558 GTTCAGCCTC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.03, C:0.41, G:0.18, T:0.38
Consensus pattern (15 bp):
CGTCTCTCAGCTTCG
Left flanking sequence: Indices 263024 -- 263523
TACCTGAAGCAGCACGGGTACGCCTGCGTTTCGGGGTCGAAGACTCCTCGTTAATATCGGGCTTC
GGTGCACGTTGGCGTTGTGGCAGCTTCGGTCGATCCATGAAACTTGGTCGTGATCTAGGACGTAA
GTTGAAAGGCTCATCTTGAGCAAACGGAGCTACTCGCTCTGGGGTCCCGCTGGACAGAGATTCTG
GAACCAAAGGGGGTGTTCGTTCGGGCAGTACACCGTTAGCCAGGCCATTAACCTCAGCAGCATCC
GGTGGATCAGCAGCAGCCGATTCGTGTGTAGCACCCTCGTCCTCCTCTTCGTTCTCATCATCGTC
AACAACAATAGGATCCAGAGAATTACCTCCATGACCACGCCAGTACTCTTCAAATGCATCGTCCT
CGCTTGTGGAGGCATCAGCAGGCGTTTTGCGCGCGGTGAAAGTCTTTTGGCGTGCTTCGTGCACC
TCCTTCTCTCTGCGGATCTTCTCTTCTCGACGTAATCTCTCTGAT
Right flanking sequence: Indices 263558 -- 264057
GTTCAGCCTCACGACGGCGGATAGCCTCTTGCATGCGATCCTGGTCCCGTTTCTCGCGGGCTTTG
CGCTCTTCAGCGCGTTTGCGCTCGTTGTGGGCTTCTCGGAGATGTTCGTCGTCGCGTTTGTAGTG
ACTAAAGTAGTCAAACATTCCCGTAAACAGAGCAAAATGGTTGGTGGTGCTGAAGCCACCAAAGT
AGCGGTCAGTCTTGCGGGGGGCCCCGGCTCGCGTAAACGGCAGTTCGTAGGTATGTGTTGGTTGT
CTGGGAGCTGTGTAGTTCGTGCGGTCAAACGCGGCTCGCAGCGTAGGATTGCTGAGGGTCTCGTA
TGCCTCCTTAATCCTGAGGAAGAGTTCATGGTCGCTGGGCTTATCTGTTTTGTCTGGGTGGTACC
GTAGCGATAATTTGCGGAAGGCCTTTTTGATTTCAGCCTCCAGAGCCAGTGAACTCACTCCGAGG
ACTTCGTAGTGGCTCATGGTGCTCTCGTTGTGTTGGGTATCTCGC
Found at i:276277 original size:18 final size:18
Alignment explanation
Indices: 276254--276297 Score: 70
Period size: 18 Copynumber: 2.4 Consensus size: 18
276244 AGATCCTGAC
* *
276254 TCCAGCGACTCTAGTGAT
1 TCCAGCGACTCCAGCGAT
276272 TCCAGCGACTCCAGCGAT
1 TCCAGCGACTCCAGCGAT
276290 TCCAGCGA
1 TCCAGCGA
276298 TGACGATGAT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.23, C:0.34, G:0.23, T:0.20
Consensus pattern (18 bp):
TCCAGCGACTCCAGCGAT
Left flanking sequence: Indices 275754 -- 276253
GTTTATAGTGGTGGAGTAAGAGCGTTTGCCGCTATAAAAGACATCAAATATGGAGTATTATTTGC
CTCGGAGGTGCTATCTGACTGTTGTAAGTGTATCATGAGGATGCCTTAAACCTAAAAATTTAAGA
GTAAAGTAACGATATCCCCTATGTATAGTTGATGAGCAGTTGAAGTCTCCGCCTGCTCAATATTG
GTGTGTTTGGCCACAGACTGCACCGTATCTTGGCTCATCGCGGTTCGCATCTAAAGCGCGTGCGG
CTCGATGGATTGAAAACTGATTTGGGCCATTAACCATATCGATAGCAGCATATGTTTGGAGGTCG
ATACCAACCGGAACCGGCTGCACAGCCTAATTCCAGCATCTTGGATCGATTCCGCAAGCGGAAGA
GACCAGTGAATGATGTTGGGGATGAGGATGAACTGATGGATGAGGGCAATGAAGGCACCAAAAAC
GCCAATGAGTCCGCAAACACGGCTAGTGAATCCGAAGATCCTGAC
Right flanking sequence: Indices 276298 -- 276797
TGACGATGATTTAAGCTCAGGTGATGACAATGACGAAGACGTGGATATGGCAGAGGCTAACGAGG
TTATCACTGCGCCAACGAGCGCTTCACCTGTTACCCCAGCCAACCCAGAGGATACCCCTGAAACC
TCAGATTCCGAGGTCGACACCTCCGACTCTGATTCGGACTCTGAAGTCGAAATGTCTGCTAAGCA
TCAAGCCATTCTTCTGAAGTTCCACAAGTCGATGGCTAAAACGGCACGCCGCGAGGCTACCACCG
ACGCTGACATCCCTGTGGAGGACTCTGAACCTTCACAGCCGGTAGAGCAACAACCGTTGGCCCCC
ATGCCCCAACCTGCGCTTCCGAGAGACAAGAAATTGCTGGCAGGTAAGGTGGCCAACAACTTGGA
CTGGTTGACTAAGGCACAATACATTGATCCCACTTCTACGAAACCTTTTACGGAGCTTGGTTTGT
CTAAAAACACTCTCGATAATCTTGAGAGTCTTGGCTTTGACAGCG
Found at i:276286 original size:9 final size:9
Alignment explanation
Indices: 276251--276297 Score: 58
Period size: 9 Copynumber: 5.2 Consensus size: 9
276241 CGAAGATCCT
276251 GACTCCAGC
1 GACTCCAGC
* *
276260 GACTCTAGT
1 GACTCCAGC
*
276269 GATTCCAGC
1 GACTCCAGC
276278 GACTCCAGC
1 GACTCCAGC
*
276287 GATTCCAGC
1 GACTCCAGC
276296 GA
1 GA
276298 TGACGATGAT
Statistics
Matches: 31, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
9 31 1.00
ACGTcount: A:0.23, C:0.34, G:0.23, T:0.19
Consensus pattern (9 bp):
GACTCCAGC
Left flanking sequence: Indices 275751 -- 276250
AGTGTTTATAGTGGTGGAGTAAGAGCGTTTGCCGCTATAAAAGACATCAAATATGGAGTATTATT
TGCCTCGGAGGTGCTATCTGACTGTTGTAAGTGTATCATGAGGATGCCTTAAACCTAAAAATTTA
AGAGTAAAGTAACGATATCCCCTATGTATAGTTGATGAGCAGTTGAAGTCTCCGCCTGCTCAATA
TTGGTGTGTTTGGCCACAGACTGCACCGTATCTTGGCTCATCGCGGTTCGCATCTAAAGCGCGTG
CGGCTCGATGGATTGAAAACTGATTTGGGCCATTAACCATATCGATAGCAGCATATGTTTGGAGG
TCGATACCAACCGGAACCGGCTGCACAGCCTAATTCCAGCATCTTGGATCGATTCCGCAAGCGGA
AGAGACCAGTGAATGATGTTGGGGATGAGGATGAACTGATGGATGAGGGCAATGAAGGCACCAAA
AACGCCAATGAGTCCGCAAACACGGCTAGTGAATCCGAAGATCCT
Right flanking sequence: Indices 276298 -- 276797
TGACGATGATTTAAGCTCAGGTGATGACAATGACGAAGACGTGGATATGGCAGAGGCTAACGAGG
TTATCACTGCGCCAACGAGCGCTTCACCTGTTACCCCAGCCAACCCAGAGGATACCCCTGAAACC
TCAGATTCCGAGGTCGACACCTCCGACTCTGATTCGGACTCTGAAGTCGAAATGTCTGCTAAGCA
TCAAGCCATTCTTCTGAAGTTCCACAAGTCGATGGCTAAAACGGCACGCCGCGAGGCTACCACCG
ACGCTGACATCCCTGTGGAGGACTCTGAACCTTCACAGCCGGTAGAGCAACAACCGTTGGCCCCC
ATGCCCCAACCTGCGCTTCCGAGAGACAAGAAATTGCTGGCAGGTAAGGTGGCCAACAACTTGGA
CTGGTTGACTAAGGCACAATACATTGATCCCACTTCTACGAAACCTTTTACGGAGCTTGGTTTGT
CTAAAAACACTCTCGATAATCTTGAGAGTCTTGGCTTTGACAGCG
Found at i:283573 original size:30 final size:30
Alignment explanation
Indices: 283538--283606 Score: 111
Period size: 30 Copynumber: 2.3 Consensus size: 30
283528 GGGGAGACGA
*
283538 TGGGTGTTCGAACGACCTGCGTGGCGATGG
1 TGGGTGTTCGAACGACCTGCGCGGCGATGG
*
283568 TGGGTGTTCGAACGACCTGCGCGGTGATGG
1 TGGGTGTTCGAACGACCTGCGCGGCGATGG
*
283598 CGGGTGTTC
1 TGGGTGTTC
283607 AGGAGACTTC
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
30 36 1.00
ACGTcount: A:0.12, C:0.20, G:0.43, T:0.25
Consensus pattern (30 bp):
TGGGTGTTCGAACGACCTGCGCGGCGATGG
Left flanking sequence: Indices 283038 -- 283537
GCGTGATCAAGCTCTGCCGGTTCGATGGCTTCCCGATTGGAATCTCGGCCATCCACGTCTTCGTC
GATGGGCAAGATGACAGGCAGATCAATTGTCTCGTTGGCAATAGATGACGGCGATGACGGAGGAG
GGGTTCTATCGTGTGGGTGCGGTGAAGAGTGCGGGTGTTTGGGAAGGGGTCTCCGCGGTGGGGAC
GCGGAATGTAAAGGATCCTGGAGCACGCGGTCCACTGCTTTGTCGATGTTGTAATGACGAGGTGG
CAGGAACTGGCGGTACTGGGGCGATGAGGGAATCGCCAGTGGGCCGTCGGGGCGTAGATTGGGTA
CTTCGTCCGGCTTTCGATTCAAATCCCGAGTCGAAACTTGCACGGGCGAGAATTCGAGCGGTTTT
GGCGGGCTCGAGACAAATGGGTTTGCCGCTTCTTCTGCAACCGGTAAATCCCTCTCAAAAACCCT
CTGCACCAGACTGTTGGCTTTCTCCGAGGACTTGAGGGGAGACGA
Right flanking sequence: Indices 283607 -- 284106
AGGAGACTTCGGTGGAGAAGACAAGTGCTCAGAAAGGACCAGGGGCCGAACAGTTGGAGGCTCGG
AGATACCCAGGGCTGGAGGATGGTACGGGGCTTGAGATGAGGAACTGGCAGGCTCTGGGACGTAG
GAGCGCAGCGGCCCCAAAGAGGCCTTGTGTGGTTGCGGCCGACGTTGAGGTACAGGCTCGTGGCT
GCGGACTGCAAATTTCAAGAGCGAAGAGTGCAGTTCTCCTGTGAAATGCTTCCTTGGTTTCGGCT
TTGTAATTTTAGGCTGGCTCGAAATGTAGCGACCGAGTCGACTAGACCCACCCTTGGTCAGCTCA
TGAGGCTCCTTGGGCAATTTCGGCCGGCCCTCCTCATCGTCAAACTCCAGGTCAGCCGTGATATC
CGTAAGTCCCTCGTGTGAGACAAGCGGAGGCTCGAGTGTGGTTTGAACATCTTTCGCAACCATTT
GCGGTGAAGAATCAAGAGTTTGCCCGTACGAAATCGCCCGATCGC
Found at i:299592 original size:12 final size:12
Alignment explanation
Indices: 299575--299612 Score: 58
Period size: 12 Copynumber: 3.2 Consensus size: 12
299565 TTCCTTGGCT
* *
299575 TTCTTCTTCTCC
1 TTCTTCTCCTTC
299587 TTCTTCTCCTTC
1 TTCTTCTCCTTC
299599 TTCTTCTCCTTC
1 TTCTTCTCCTTC
299611 TT
1 TT
299613 GGCCTTCTTC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
12 24 1.00
ACGTcount: A:0.00, C:0.39, G:0.00, T:0.61
Consensus pattern (12 bp):
TTCTTCTCCTTC
Left flanking sequence: Indices 299075 -- 299574
GGACCTTGCCAAGATGAAGGCCAAGATCGTCGTCCACACCACCAATGACGGCTCCCAAAGCATCA
ACTGTGCGAACAAAGACCACTCGGTGATCTTGGACGAGTTGGTGAAGCTCACCGAGGCCAAGCCC
GTTCCGGAAGCCGAGATCCCCGTGATCAGCAACCCCCACTAATGTATCAGACCGCATCCTTTGTA
AATAGATTATGAATACGATTTCAGCCCTAGGACCTCCGTGAAGGAGACTTATTACGCTACAAACG
TAGATGCATTACTAACCTGAGAGACCGTTGCCCTTTTGTACCCAAAAATCGCGCTTGGTCGTTTT
GCAAACCAGCTTTGCCCGCTTTGCTGGGGCCTCGTCGCTGTCGCTGTCGGACATACGTCGTTTGC
GCGAGCCTTCTTTGGTATCGTCATCCTCCAAGCCCATGATCTCCATCACCTTCTTCTCTGCGGCT
TTTGTGTCATCGGCGGAGCGCGGCTGGGACTCCGTTTCCTTGGCT
Right flanking sequence: Indices 299613 -- 300112
GGCCTTCTTCTTGGCGTCCTTGACAACCTTGAGGTCGTCGTCGTCCGATGCTGCAGTGAACTCCA
CCGCCGGAGACGGCGTCGACCGTGCCAGCGTCGCTGGCGAGTCAGTAGGCGTCAACACCGACTTG
ATTAATGCTTCGTTTTCCACCTGGTCACGCTCGTCGTGGAAGTTACGCTCCTTGCCCCGGTACTT
AATGATGTCGCCCAATATCAGCTGGCCCAACCGTTGTTTATAAGATGCCTGGTTGAGCTCGTAGC
ACTTGGCCGTGAGCAATTGGAAGGCGCCTCCAAACGCCTTTTTCAAGTCCCGCAAGTTGTACGAC
AGCCGGGTGATGTTGTTGTCCGGGTCCGAGGGGTCTTGGATGACGATCGCGAACGGGTTCCTACC
CGCAGCAAGCAGGGGTCGTTTGTATTTGGGCATGTAGCGGGGAACATCGCCATCCAACGAGATGA
TCAAGTTGTCGTAAGAAAAGTTGCGCCCATACAACTCAAAGAATT
Found at i:299601 original size:21 final size:21
Alignment explanation
Indices: 299575--299624 Score: 82
Period size: 21 Copynumber: 2.4 Consensus size: 21
299565 TTCCTTGGCT
*
299575 TTCTTCTTCTCCTTCTTCTCC
1 TTCTTCTTCTCCTTCTTCGCC
*
299596 TTCTTCTTCTCCTTCTTGGCC
1 TTCTTCTTCTCCTTCTTCGCC
299617 TTCTTCTT
1 TTCTTCTT
299625 GGCGTCCTTG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.00, C:0.38, G:0.04, T:0.58
Consensus pattern (21 bp):
TTCTTCTTCTCCTTCTTCGCC
Left flanking sequence: Indices 299075 -- 299574
GGACCTTGCCAAGATGAAGGCCAAGATCGTCGTCCACACCACCAATGACGGCTCCCAAAGCATCA
ACTGTGCGAACAAAGACCACTCGGTGATCTTGGACGAGTTGGTGAAGCTCACCGAGGCCAAGCCC
GTTCCGGAAGCCGAGATCCCCGTGATCAGCAACCCCCACTAATGTATCAGACCGCATCCTTTGTA
AATAGATTATGAATACGATTTCAGCCCTAGGACCTCCGTGAAGGAGACTTATTACGCTACAAACG
TAGATGCATTACTAACCTGAGAGACCGTTGCCCTTTTGTACCCAAAAATCGCGCTTGGTCGTTTT
GCAAACCAGCTTTGCCCGCTTTGCTGGGGCCTCGTCGCTGTCGCTGTCGGACATACGTCGTTTGC
GCGAGCCTTCTTTGGTATCGTCATCCTCCAAGCCCATGATCTCCATCACCTTCTTCTCTGCGGCT
TTTGTGTCATCGGCGGAGCGCGGCTGGGACTCCGTTTCCTTGGCT
Right flanking sequence: Indices 299625 -- 300124
GGCGTCCTTGACAACCTTGAGGTCGTCGTCGTCCGATGCTGCAGTGAACTCCACCGCCGGAGACG
GCGTCGACCGTGCCAGCGTCGCTGGCGAGTCAGTAGGCGTCAACACCGACTTGATTAATGCTTCG
TTTTCCACCTGGTCACGCTCGTCGTGGAAGTTACGCTCCTTGCCCCGGTACTTAATGATGTCGCC
CAATATCAGCTGGCCCAACCGTTGTTTATAAGATGCCTGGTTGAGCTCGTAGCACTTGGCCGTGA
GCAATTGGAAGGCGCCTCCAAACGCCTTTTTCAAGTCCCGCAAGTTGTACGACAGCCGGGTGATG
TTGTTGTCCGGGTCCGAGGGGTCTTGGATGACGATCGCGAACGGGTTCCTACCCGCAGCAAGCAG
GGGTCGTTTGTATTTGGGCATGTAGCGGGGAACATCGCCATCCAACGAGATGATCAAGTTGTCGT
AAGAAAAGTTGCGCCCATACAACTCAAAGAATTCGATGAGAAGGG
Found at i:299612 original size:9 final size:9
Alignment explanation
Indices: 299577--299602 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
299567 CCTTGGCTTT
299577 CTTCTTCTC
1 CTTCTTCTC
299586 CTTCTTCTC
1 CTTCTTCTC
299595 CTTCTTCT
1 CTTCTTCT
299603 TCTCCTTCTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.00, C:0.42, G:0.00, T:0.58
Consensus pattern (9 bp):
CTTCTTCTC
Left flanking sequence: Indices 299077 -- 299576
ACCTTGCCAAGATGAAGGCCAAGATCGTCGTCCACACCACCAATGACGGCTCCCAAAGCATCAAC
TGTGCGAACAAAGACCACTCGGTGATCTTGGACGAGTTGGTGAAGCTCACCGAGGCCAAGCCCGT
TCCGGAAGCCGAGATCCCCGTGATCAGCAACCCCCACTAATGTATCAGACCGCATCCTTTGTAAA
TAGATTATGAATACGATTTCAGCCCTAGGACCTCCGTGAAGGAGACTTATTACGCTACAAACGTA
GATGCATTACTAACCTGAGAGACCGTTGCCCTTTTGTACCCAAAAATCGCGCTTGGTCGTTTTGC
AAACCAGCTTTGCCCGCTTTGCTGGGGCCTCGTCGCTGTCGCTGTCGGACATACGTCGTTTGCGC
GAGCCTTCTTTGGTATCGTCATCCTCCAAGCCCATGATCTCCATCACCTTCTTCTCTGCGGCTTT
TGTGTCATCGGCGGAGCGCGGCTGGGACTCCGTTTCCTTGGCTTT
Right flanking sequence: Indices 299603 -- 300102
TCTCCTTCTTGGCCTTCTTCTTGGCGTCCTTGACAACCTTGAGGTCGTCGTCGTCCGATGCTGCA
GTGAACTCCACCGCCGGAGACGGCGTCGACCGTGCCAGCGTCGCTGGCGAGTCAGTAGGCGTCAA
CACCGACTTGATTAATGCTTCGTTTTCCACCTGGTCACGCTCGTCGTGGAAGTTACGCTCCTTGC
CCCGGTACTTAATGATGTCGCCCAATATCAGCTGGCCCAACCGTTGTTTATAAGATGCCTGGTTG
AGCTCGTAGCACTTGGCCGTGAGCAATTGGAAGGCGCCTCCAAACGCCTTTTTCAAGTCCCGCAA
GTTGTACGACAGCCGGGTGATGTTGTTGTCCGGGTCCGAGGGGTCTTGGATGACGATCGCGAACG
GGTTCCTACCCGCAGCAAGCAGGGGTCGTTTGTATTTGGGCATGTAGCGGGGAACATCGCCATCC
AACGAGATGATCAAGTTGTCGTAAGAAAAGTTGCGCCCATACAAC
Found at i:307886 original size:15 final size:15
Alignment explanation
Indices: 307799--307890 Score: 134
Period size: 15 Copynumber: 6.1 Consensus size: 15
307789 TTCCTGCTCT
*
307799 TCCTCACGGGGGGTG
1 TCCTCACGGGGAGTG
307814 TCCTCACGAGGG-GTG
1 TCCTCACG-GGGAGTG
307829 TCCTCACGAGGG-GTG
1 TCCTCACG-GGGAGTG
307844 TCCTCACGGGGAGTG
1 TCCTCACGGGGAGTG
307859 TCCTCACGGGGAGTG
1 TCCTCACGGGGAGTG
*
307874 TCCTCACGTGGAGTG
1 TCCTCACGGGGAGTG
307889 TC
1 TC
307891 ATTTGCTTGA
Statistics
Matches: 74, Mismatches: 1, Indels: 4
0.94 0.01 0.05
Matches are distributed among these distances:
14 3 0.04
15 68 0.92
16 3 0.04
ACGTcount: A:0.12, C:0.27, G:0.39, T:0.22
Consensus pattern (15 bp):
TCCTCACGGGGAGTG
Left flanking sequence: Indices 307299 -- 307798
AAATAGGTTACTTAAAGGTTGTAGAGACGCGTTTATCTATTATCTACTACTGGGCTACGCGTTTG
CGGAGGGGTTCGTCTGAGTCTGAGTCGGACTCGATCAAGCCGTGGCTGCGCTTGCGGGTGTCGGG
CTCGGGCGTCGCTGCGACGCTGGACGTGTTCTGGTCGTCGTTGGCCGCGGGGCTGCGTGTGTCCT
CGCGGGAGGGGAGGGCTGAGGGTGAGGTGGAGCGGCAGTCCGAGTAATCATCGTAGTCGTCTTTT
GCTCGAGGGGTTGATTGTGCCAGGTGGGGTGAGTCGTCAAGCGGAGTCTCGTCTCGGTCTTCGCG
AGGAGAGCGGGCTTCTTCCCTGTCACGGGGCGACTGAGTCTCGTCTCGGTCTTCGATGGGCGTCT
CACGGTCTTCGCGAGGCGACTGTGTCTCCGCTCGGGGTGACTCTTTATGATCATCAGGCGAAAGA
GGAGTCTCATCCCGCATTTCTACATCGGGCGAAGCTTCCTGCTCT
Right flanking sequence: Indices 307891 -- 308390
ATTTGCTTGAGTTTCCTCAGCCTGCGGTGTGTCCTCGGTATGGGGAGTTTCGTCCCGGTCGTTGG
TCTCCCGCGAATAATCGTCACCGATGTCCTCAACAGGAGCCGTGTCTTCACGAGGGGTCTCTTCG
CGGGGCGTGTTCTCACGAGGCGTTTCATCGCGGTCGGTTTTGCCAACCTGTGGAGTATCTTCCAT
AGGAGTGTCTTCACGAGAAGCACTCTTGCCGTTACCGTTAGCTTCGCTCAGAACAGCGCCTCCGT
CCGCCTTCGTCTCTGCATTCTTCGCCTCGTCCTTCTCTTCCTTCTTCCCCTCCTTGTCGTTCGAC
TTCTCTTCCTCTTCATCCTCGGACTCAGCGTTGAAATCCAAGGGGTTTTCAACCAACTTCTCCTT
GGCCAAAATGCCGGTGAGCGAGAGCCATTCTCCATTTCTTTGCTTGCGCAACAGCTTCCACAACA
ACGTATTGCGTTCATCTAAATGGGAGTAGTCGCCTGCAGCCACTT
Found at i:313723 original size:24 final size:23
Alignment explanation
Indices: 313696--313763 Score: 79
Period size: 21 Copynumber: 3.0 Consensus size: 23
313686 GGCGGAACGG
*
313696 GCGGAAGAGGAGGCCAAGCGTGAA
1 GCGGAAGAGGCGGCC-AGCGTGAA
313720 GC-G--GAGGCGGCTCAGCGTGAA
1 GCGGAAGAGGCGGC-CAGCGTGAA
313741 GCGGAAGAGGCGGCCGAGCGTGA
1 GCGGAAGAGGCGGCC-AGCGTGA
313764 GGCCAAGCAG
Statistics
Matches: 38, Mismatches: 1, Indels: 10
0.78 0.02 0.20
Matches are distributed among these distances:
21 17 0.45
22 2 0.05
23 2 0.05
24 17 0.45
ACGTcount: A:0.25, C:0.21, G:0.49, T:0.06
Consensus pattern (23 bp):
GCGGAAGAGGCGGCCAGCGTGAA
Left flanking sequence: Indices 313196 -- 313695
GTGGCCAGGCGGTGGCCCAGTTGTTGAATCCAGCCCACGAAAAGATCCTTAGGCAGTACTTCAAG
CTGTTACAGGAGACGATTGACGTGCTCGACCTGTTTGCCGACTCCACTGTGGGCGACCTTAACCG
CCAGTTGACAAGTGCACTCGAAGTGGCTCTGCAGAATGGCTCCGAGGACGTTGACCTGTGGGACG
CCTGGAAGCGGTTCCACAAGATCAAGGAGGAGATCTTTGCCTACCGTGACTGGTTGTATGACGTG
GCTACCGAGTACAAGACGAGTAAGTCGCGCTCGGCAGCGGTGGTGGGGATTGAGCTGTGGCTGGA
GTATGTGAGCAGTATTGACTTCCACATCCTGGCTCTCTTAGGCGACAATGACCACTACTTGCAGT
TAATGCGTGCTAAGGGTAACGTTGCGTTCCAGTTGCGCGAGAGCTTCCAGGAGCAGTTGCAAGAG
GAGGCCTTGAAGCGTGAGCAAGAGGAAGTCGAGGAGGCGGAACGG
Right flanking sequence: Indices 313764 -- 314263
GGCCAAGCAGCAGGTTGAAGTCGAGGAGGCCGAGGAAAAGGAGGAAGAGGTGGAAGAGGGCGACA
ACGAAGTGGAAGACGCCGAGGAGGACGCCGAGGAAAATGCTGAAGTTGACCAAGCGCAACCTGCT
GAAGAGGTGATTGACGTGGTTGACGTCGTTGAGGAGCTCGAAGTCGAAGACGTGGCTGAACCTGC
GGTTGAAGAGAACGAGCCTGTGGTTAACGAGGAAGAACCGGAGGTGGAGGATGAGGCTGCTGAAG
AAGAGACCGACGAGGAAGTCGTGGTTGAAGAGCAACAAGAACAGGTCTACGAAGAAGCTCCTATC
GCCGAAGAACAAGTTGTTGGCGACTTCGAGGAAGACGATGATCCGGACGCGTAAAGCTTGCGCAT
AGATTAGGTGTATCGGTGTTTAGTAATAGTATTTCTCTAATAGCCCACTCGGTCTGGGATGCTCG
ATTTTTCACTTGATCTCGATCGATTCTCAGCCCCACCCCCGCTTT
Found at i:332901 original size:19 final size:19
Alignment explanation
Indices: 332877--332928 Score: 104
Period size: 19 Copynumber: 2.7 Consensus size: 19
332867 CGGTAGACGT
332877 TGGCTGCAGAGGTTAGAGG
1 TGGCTGCAGAGGTTAGAGG
332896 TGGCTGCAGAGGTTAGAGG
1 TGGCTGCAGAGGTTAGAGG
332915 TGGCTGCAGAGGTT
1 TGGCTGCAGAGGTT
332929 GCAGAGGTTG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 33 1.00
ACGTcount: A:0.19, C:0.12, G:0.46, T:0.23
Consensus pattern (19 bp):
TGGCTGCAGAGGTTAGAGG
Left flanking sequence: Indices 332377 -- 332876
CTTTCTGCACTTGATCGGGTTCAACAACGACGACGAGCTCTTGTGGAACGCGCTGTGGGGCACCG
AGCAGGTGATGAAGGAGCTCACCAAGGGGTGCAAAAAGACGTGGGCCCCCTACAAGCGCCCGCAG
CAGGACGTCACCATCTGGGCCAACGAGGTGATCAAGCTCGGGCGGCTGATGATGCCCAACGCCAT
TCTCGCGGCGTCGCACATGTACAAGTACCAGGACCCCAGCGAGCGGGCCAAGCCGCGGATGGTGA
AGGACTTGGCGATGCGCAACTTGGCCAACATCACCAACGCGCCGCCGGACTCGGACGACGCCCGC
AAGGTGGTGCGGCAGACGCGGTCCTACATGAGGAAGATGGGGCGGTAGCCGTCGGGAGCGTTACC
CCCGCACGGCATAATGACAGTAGTGATGGACTCTTTAATAGAATGCATACCATAGGCACGGGAGT
GCGTCGCGTAGACGGTAGTAAGCGCGAGACGGCTGCGGTAGACGT
Right flanking sequence: Indices 332929 -- 333428
GCAGAGGTTGCAGAGGTGGCTGCAGCGGTAGGCAGAGGTTAAGCTGCAGAGGTGGCTGCAGAGGT
AGGCTGCAAAGGTTATTAATAGATACACAGCCACGGACGAGTAGGGGAGTAGGGGAGTAGGAGTA
GGGGAGTAGGAGTAGGGGAGTAGGAGTAGGGGAATGTTTCACTAGAAGGGGGAGTGGGTTTCTAG
GAGTAGAGAGTACGTTCGCTAAGAGTAGGGGAGTGGTTCACCAGGAGTAGGGGAGTGGTTCGCTA
GAGGTAGGGAAGTGGTTCGCTAAGTGTTGGTGAATAGGTTTCTAGGCGTAGGGAGTAAGTGAATA
TCGTCTCAGGAGTACGCGTAGGGAGTAGGTTCGACCACGTTTACTCGGCAGATTCTCCAATCCTA
ACAATAGGCCATCCCACCGGTTTAGGTTCCGGTTAAGGTTGTGACGCCATCGATGCGTTTCTCCC
TGGAATGATGCCGGGATGTACATTCCTGGAGCCAGTGTCAAATGC
Found at i:332908 original size:12 final size:12
Alignment explanation
Indices: 332891--333006 Score: 78
Period size: 12 Copynumber: 10.5 Consensus size: 12
332881 TGCAGAGGTT
332891 AGAGGTGGCTGC
1 AGAGGTGGCTGC
332903 AGAGGT---T--
1 AGAGGTGGCTGC
332910 AGAGGTGGCTGC
1 AGAGGTGGCTGC
332922 AGAGGT---TGC
1 AGAGGTGGCTGC
332931 AGAGGT---TGC
1 AGAGGTGGCTGC
332940 AGAGGTGGCTGC
1 AGAGGTGGCTGC
* *
332952 AGCGGTAG--GC
1 AGAGGTGGCTGC
*
332962 AGAGGTTAAGCTGC
1 AGAGG-T-GGCTGC
332976 AGAGGTGGCTGC
1 AGAGGTGGCTGC
332988 AGAGGTAGGCTGC
1 AGAGGT-GGCTGC
*
333001 AAAGGT
1 AGAGGT
333007 TATTAATAGA
Statistics
Matches: 86, Mismatches: 5, Indels: 25
0.74 0.04 0.22
Matches are distributed among these distances:
7 6 0.07
9 19 0.22
10 7 0.08
11 1 0.01
12 34 0.40
13 12 0.14
14 7 0.08
ACGTcount: A:0.22, C:0.14, G:0.46, T:0.18
Consensus pattern (12 bp):
AGAGGTGGCTGC
Left flanking sequence: Indices 332391 -- 332890
TCGGGTTCAACAACGACGACGAGCTCTTGTGGAACGCGCTGTGGGGCACCGAGCAGGTGATGAAG
GAGCTCACCAAGGGGTGCAAAAAGACGTGGGCCCCCTACAAGCGCCCGCAGCAGGACGTCACCAT
CTGGGCCAACGAGGTGATCAAGCTCGGGCGGCTGATGATGCCCAACGCCATTCTCGCGGCGTCGC
ACATGTACAAGTACCAGGACCCCAGCGAGCGGGCCAAGCCGCGGATGGTGAAGGACTTGGCGATG
CGCAACTTGGCCAACATCACCAACGCGCCGCCGGACTCGGACGACGCCCGCAAGGTGGTGCGGCA
GACGCGGTCCTACATGAGGAAGATGGGGCGGTAGCCGTCGGGAGCGTTACCCCCGCACGGCATAA
TGACAGTAGTGATGGACTCTTTAATAGAATGCATACCATAGGCACGGGAGTGCGTCGCGTAGACG
GTAGTAAGCGCGAGACGGCTGCGGTAGACGTTGGCTGCAGAGGTT
Right flanking sequence: Indices 333007 -- 333506
TATTAATAGATACACAGCCACGGACGAGTAGGGGAGTAGGGGAGTAGGAGTAGGGGAGTAGGAGT
AGGGGAGTAGGAGTAGGGGAATGTTTCACTAGAAGGGGGAGTGGGTTTCTAGGAGTAGAGAGTAC
GTTCGCTAAGAGTAGGGGAGTGGTTCACCAGGAGTAGGGGAGTGGTTCGCTAGAGGTAGGGAAGT
GGTTCGCTAAGTGTTGGTGAATAGGTTTCTAGGCGTAGGGAGTAAGTGAATATCGTCTCAGGAGT
ACGCGTAGGGAGTAGGTTCGACCACGTTTACTCGGCAGATTCTCCAATCCTAACAATAGGCCATC
CCACCGGTTTAGGTTCCGGTTAAGGTTGTGACGCCATCGATGCGTTTCTCCCTGGAATGATGCCG
GGATGTACATTCCTGGAGCCAGTGTCAAATGCCCAGCAGTGTCAAATTCCTAGTGTCAAATTCCT
AGTGTCAAACCGACTCAACCCGTGGAAACGCGTCACTGTACGAAT
Found at i:332933 original size:9 final size:9
Alignment explanation
Indices: 332919--332945 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
332909 TAGAGGTGGC
332919 TGCAGAGGT
1 TGCAGAGGT
332928 TGCAGAGGT
1 TGCAGAGGT
332937 TGCAGAGGT
1 TGCAGAGGT
332946 GGCTGCAGCG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.22, C:0.11, G:0.44, T:0.22
Consensus pattern (9 bp):
TGCAGAGGT
Left flanking sequence: Indices 332419 -- 332918
GTGGAACGCGCTGTGGGGCACCGAGCAGGTGATGAAGGAGCTCACCAAGGGGTGCAAAAAGACGT
GGGCCCCCTACAAGCGCCCGCAGCAGGACGTCACCATCTGGGCCAACGAGGTGATCAAGCTCGGG
CGGCTGATGATGCCCAACGCCATTCTCGCGGCGTCGCACATGTACAAGTACCAGGACCCCAGCGA
GCGGGCCAAGCCGCGGATGGTGAAGGACTTGGCGATGCGCAACTTGGCCAACATCACCAACGCGC
CGCCGGACTCGGACGACGCCCGCAAGGTGGTGCGGCAGACGCGGTCCTACATGAGGAAGATGGGG
CGGTAGCCGTCGGGAGCGTTACCCCCGCACGGCATAATGACAGTAGTGATGGACTCTTTAATAGA
ATGCATACCATAGGCACGGGAGTGCGTCGCGTAGACGGTAGTAAGCGCGAGACGGCTGCGGTAGA
CGTTGGCTGCAGAGGTTAGAGGTGGCTGCAGAGGTTAGAGGTGGC
Right flanking sequence: Indices 332946 -- 333445
GGCTGCAGCGGTAGGCAGAGGTTAAGCTGCAGAGGTGGCTGCAGAGGTAGGCTGCAAAGGTTATT
AATAGATACACAGCCACGGACGAGTAGGGGAGTAGGGGAGTAGGAGTAGGGGAGTAGGAGTAGGG
GAGTAGGAGTAGGGGAATGTTTCACTAGAAGGGGGAGTGGGTTTCTAGGAGTAGAGAGTACGTTC
GCTAAGAGTAGGGGAGTGGTTCACCAGGAGTAGGGGAGTGGTTCGCTAGAGGTAGGGAAGTGGTT
CGCTAAGTGTTGGTGAATAGGTTTCTAGGCGTAGGGAGTAAGTGAATATCGTCTCAGGAGTACGC
GTAGGGAGTAGGTTCGACCACGTTTACTCGGCAGATTCTCCAATCCTAACAATAGGCCATCCCAC
CGGTTTAGGTTCCGGTTAAGGTTGTGACGCCATCGATGCGTTTCTCCCTGGAATGATGCCGGGAT
GTACATTCCTGGAGCCAGTGTCAAATGCCCAGCAGTGTCAAATTC
Found at i:333045 original size:8 final size:8
Alignment explanation
Indices: 333032--333091 Score: 78
Period size: 8 Copynumber: 8.2 Consensus size: 8
333022 AGCCACGGAC
333032 GAGTAGGG
1 GAGTAGGG
333040 GAGTAGGG
1 GAGTAGGG
333048 GAGTA--G
1 GAGTAGGG
333054 GAGTAGGG
1 GAGTAGGG
333062 GAGTA--G
1 GAGTAGGG
333068 GAGTAGGG
1 GAGTAGGG
333076 GAGTA--G
1 GAGTAGGG
333082 GAGTAGGG
1 GAGTAGGG
333090 GA
1 GA
333092 ATGTTTCACT
Statistics
Matches: 46, Mismatches: 0, Indels: 12
0.79 0.00 0.21
Matches are distributed among these distances:
6 18 0.39
8 28 0.61
ACGTcount: A:0.28, C:0.00, G:0.58, T:0.13
Consensus pattern (8 bp):
GAGTAGGG
Left flanking sequence: Indices 332532 -- 333031
AGGTGATCAAGCTCGGGCGGCTGATGATGCCCAACGCCATTCTCGCGGCGTCGCACATGTACAAG
TACCAGGACCCCAGCGAGCGGGCCAAGCCGCGGATGGTGAAGGACTTGGCGATGCGCAACTTGGC
CAACATCACCAACGCGCCGCCGGACTCGGACGACGCCCGCAAGGTGGTGCGGCAGACGCGGTCCT
ACATGAGGAAGATGGGGCGGTAGCCGTCGGGAGCGTTACCCCCGCACGGCATAATGACAGTAGTG
ATGGACTCTTTAATAGAATGCATACCATAGGCACGGGAGTGCGTCGCGTAGACGGTAGTAAGCGC
GAGACGGCTGCGGTAGACGTTGGCTGCAGAGGTTAGAGGTGGCTGCAGAGGTTAGAGGTGGCTGC
AGAGGTTGCAGAGGTTGCAGAGGTGGCTGCAGCGGTAGGCAGAGGTTAAGCTGCAGAGGTGGCTG
CAGAGGTAGGCTGCAAAGGTTATTAATAGATACACAGCCACGGAC
Right flanking sequence: Indices 333092 -- 333591
ATGTTTCACTAGAAGGGGGAGTGGGTTTCTAGGAGTAGAGAGTACGTTCGCTAAGAGTAGGGGAG
TGGTTCACCAGGAGTAGGGGAGTGGTTCGCTAGAGGTAGGGAAGTGGTTCGCTAAGTGTTGGTGA
ATAGGTTTCTAGGCGTAGGGAGTAAGTGAATATCGTCTCAGGAGTACGCGTAGGGAGTAGGTTCG
ACCACGTTTACTCGGCAGATTCTCCAATCCTAACAATAGGCCATCCCACCGGTTTAGGTTCCGGT
TAAGGTTGTGACGCCATCGATGCGTTTCTCCCTGGAATGATGCCGGGATGTACATTCCTGGAGCC
AGTGTCAAATGCCCAGCAGTGTCAAATTCCTAGTGTCAAATTCCTAGTGTCAAACCGACTCAACC
CGTGGAAACGCGTCACTGTACGAATTGCGTCACTCTGGACACCCTACAGCAGGCACCTCCATCCC
CATCCTCATCGTCCCACATCATCGGGCCACATTCCCCGCGCGCTT
Found at i:333058 original size:14 final size:14
Alignment explanation
Indices: 333039--333091 Score: 106
Period size: 14 Copynumber: 3.8 Consensus size: 14
333029 GACGAGTAGG
333039 GGAGTAGGGGAGTA
1 GGAGTAGGGGAGTA
333053 GGAGTAGGGGAGTA
1 GGAGTAGGGGAGTA
333067 GGAGTAGGGGAGTA
1 GGAGTAGGGGAGTA
333081 GGAGTAGGGGA
1 GGAGTAGGGGA
333092 ATGTTTCACT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 39 1.00
ACGTcount: A:0.28, C:0.00, G:0.58, T:0.13
Consensus pattern (14 bp):
GGAGTAGGGGAGTA
Left flanking sequence: Indices 332539 -- 333038
CAAGCTCGGGCGGCTGATGATGCCCAACGCCATTCTCGCGGCGTCGCACATGTACAAGTACCAGG
ACCCCAGCGAGCGGGCCAAGCCGCGGATGGTGAAGGACTTGGCGATGCGCAACTTGGCCAACATC
ACCAACGCGCCGCCGGACTCGGACGACGCCCGCAAGGTGGTGCGGCAGACGCGGTCCTACATGAG
GAAGATGGGGCGGTAGCCGTCGGGAGCGTTACCCCCGCACGGCATAATGACAGTAGTGATGGACT
CTTTAATAGAATGCATACCATAGGCACGGGAGTGCGTCGCGTAGACGGTAGTAAGCGCGAGACGG
CTGCGGTAGACGTTGGCTGCAGAGGTTAGAGGTGGCTGCAGAGGTTAGAGGTGGCTGCAGAGGTT
GCAGAGGTTGCAGAGGTGGCTGCAGCGGTAGGCAGAGGTTAAGCTGCAGAGGTGGCTGCAGAGGT
AGGCTGCAAAGGTTATTAATAGATACACAGCCACGGACGAGTAGG
Right flanking sequence: Indices 333092 -- 333591
ATGTTTCACTAGAAGGGGGAGTGGGTTTCTAGGAGTAGAGAGTACGTTCGCTAAGAGTAGGGGAG
TGGTTCACCAGGAGTAGGGGAGTGGTTCGCTAGAGGTAGGGAAGTGGTTCGCTAAGTGTTGGTGA
ATAGGTTTCTAGGCGTAGGGAGTAAGTGAATATCGTCTCAGGAGTACGCGTAGGGAGTAGGTTCG
ACCACGTTTACTCGGCAGATTCTCCAATCCTAACAATAGGCCATCCCACCGGTTTAGGTTCCGGT
TAAGGTTGTGACGCCATCGATGCGTTTCTCCCTGGAATGATGCCGGGATGTACATTCCTGGAGCC
AGTGTCAAATGCCCAGCAGTGTCAAATTCCTAGTGTCAAATTCCTAGTGTCAAACCGACTCAACC
CGTGGAAACGCGTCACTGTACGAATTGCGTCACTCTGGACACCCTACAGCAGGCACCTCCATCCC
CATCCTCATCGTCCCACATCATCGGGCCACATTCCCCGCGCGCTT
Found at i:333162 original size:22 final size:22
Alignment explanation
Indices: 333137--333212 Score: 100
Period size: 22 Copynumber: 3.5 Consensus size: 22
333127 TAGAGAGTAC
333137 GTTCGCTAAGAGTAGGGGAGTG
1 GTTCGCTAAGAGTAGGGGAGTG
* * *
333159 GTTCACCAGGAGTAGGGGAGTG
1 GTTCGCTAAGAGTAGGGGAGTG
*
333181 GTTCGCT-AGAGGTAGGGAAGTG
1 GTTCGCTAAGA-GTAGGGGAGTG
333203 GTTCGCTAAG
1 GTTCGCTAAG
333213 TGTTGGTGAA
Statistics
Matches: 45, Mismatches: 7, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
21 2 0.04
22 41 0.91
23 2 0.04
ACGTcount: A:0.22, C:0.12, G:0.43, T:0.22
Consensus pattern (22 bp):
GTTCGCTAAGAGTAGGGGAGTG
Left flanking sequence: Indices 332637 -- 333136
AGGACTTGGCGATGCGCAACTTGGCCAACATCACCAACGCGCCGCCGGACTCGGACGACGCCCGC
AAGGTGGTGCGGCAGACGCGGTCCTACATGAGGAAGATGGGGCGGTAGCCGTCGGGAGCGTTACC
CCCGCACGGCATAATGACAGTAGTGATGGACTCTTTAATAGAATGCATACCATAGGCACGGGAGT
GCGTCGCGTAGACGGTAGTAAGCGCGAGACGGCTGCGGTAGACGTTGGCTGCAGAGGTTAGAGGT
GGCTGCAGAGGTTAGAGGTGGCTGCAGAGGTTGCAGAGGTTGCAGAGGTGGCTGCAGCGGTAGGC
AGAGGTTAAGCTGCAGAGGTGGCTGCAGAGGTAGGCTGCAAAGGTTATTAATAGATACACAGCCA
CGGACGAGTAGGGGAGTAGGGGAGTAGGAGTAGGGGAGTAGGAGTAGGGGAGTAGGAGTAGGGGA
ATGTTTCACTAGAAGGGGGAGTGGGTTTCTAGGAGTAGAGAGTAC
Right flanking sequence: Indices 333213 -- 333712
TGTTGGTGAATAGGTTTCTAGGCGTAGGGAGTAAGTGAATATCGTCTCAGGAGTACGCGTAGGGA
GTAGGTTCGACCACGTTTACTCGGCAGATTCTCCAATCCTAACAATAGGCCATCCCACCGGTTTA
GGTTCCGGTTAAGGTTGTGACGCCATCGATGCGTTTCTCCCTGGAATGATGCCGGGATGTACATT
CCTGGAGCCAGTGTCAAATGCCCAGCAGTGTCAAATTCCTAGTGTCAAATTCCTAGTGTCAAACC
GACTCAACCCGTGGAAACGCGTCACTGTACGAATTGCGTCACTCTGGACACCCTACAGCAGGCAC
CTCCATCCCCATCCTCATCGTCCCACATCATCGGGCCACATTCCCCGCGCGCTTCGCCGTACTAC
CCCGCCACCCGTAACCCACCCGTAACCCCACCCGTAACCCCCACGTAAAACCCCCCAACTACAAC
CGCCTCGGTGTTCCCAATCCGTCCGCCTCGTGCATGGTTCATCTG
Found at i:333170 original size:44 final size:44
Alignment explanation
Indices: 333122--333206 Score: 111
Period size: 44 Copynumber: 1.9 Consensus size: 44
333112 GTGGGTTTCT
*
333122 AGGAGTA-GAGAGTACGTTCGCTA-AGAGTAGGGGAGTGGTTCACC
1 AGGAGTAGGAGAGT-CGTTCGCTAGAG-GTAGGGAAGTGGTTCACC
* *
333166 AGGAGTAGGGGAGTGGTTCGCTAGAGGTAGGGAAGTGGTTC
1 AGGAGTAGGAGAGTCGTTCGCTAGAGGTAGGGAAGTGGTTC
333207 GCTAAGTGTT
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
44 29 0.81
45 7 0.19
ACGTcount: A:0.25, C:0.11, G:0.44, T:0.21
Consensus pattern (44 bp):
AGGAGTAGGAGAGTCGTTCGCTAGAGGTAGGGAAGTGGTTCACC
Left flanking sequence: Indices 332622 -- 333121
AGCCGCGGATGGTGAAGGACTTGGCGATGCGCAACTTGGCCAACATCACCAACGCGCCGCCGGAC
TCGGACGACGCCCGCAAGGTGGTGCGGCAGACGCGGTCCTACATGAGGAAGATGGGGCGGTAGCC
GTCGGGAGCGTTACCCCCGCACGGCATAATGACAGTAGTGATGGACTCTTTAATAGAATGCATAC
CATAGGCACGGGAGTGCGTCGCGTAGACGGTAGTAAGCGCGAGACGGCTGCGGTAGACGTTGGCT
GCAGAGGTTAGAGGTGGCTGCAGAGGTTAGAGGTGGCTGCAGAGGTTGCAGAGGTTGCAGAGGTG
GCTGCAGCGGTAGGCAGAGGTTAAGCTGCAGAGGTGGCTGCAGAGGTAGGCTGCAAAGGTTATTA
ATAGATACACAGCCACGGACGAGTAGGGGAGTAGGGGAGTAGGAGTAGGGGAGTAGGAGTAGGGG
AGTAGGAGTAGGGGAATGTTTCACTAGAAGGGGGAGTGGGTTTCT
Right flanking sequence: Indices 333207 -- 333706
GCTAAGTGTTGGTGAATAGGTTTCTAGGCGTAGGGAGTAAGTGAATATCGTCTCAGGAGTACGCG
TAGGGAGTAGGTTCGACCACGTTTACTCGGCAGATTCTCCAATCCTAACAATAGGCCATCCCACC
GGTTTAGGTTCCGGTTAAGGTTGTGACGCCATCGATGCGTTTCTCCCTGGAATGATGCCGGGATG
TACATTCCTGGAGCCAGTGTCAAATGCCCAGCAGTGTCAAATTCCTAGTGTCAAATTCCTAGTGT
CAAACCGACTCAACCCGTGGAAACGCGTCACTGTACGAATTGCGTCACTCTGGACACCCTACAGC
AGGCACCTCCATCCCCATCCTCATCGTCCCACATCATCGGGCCACATTCCCCGCGCGCTTCGCCG
TACTACCCCGCCACCCGTAACCCACCCGTAACCCCACCCGTAACCCCCACGTAAAACCCCCCAAC
TACAACCGCCTCGGTGTTCCCAATCCGTCCGCCTCGTGCATGGTT
Found at i:333451 original size:14 final size:14
Alignment explanation
Indices: 333434--333470 Score: 74
Period size: 14 Copynumber: 2.6 Consensus size: 14
333424 AATGCCCAGC
333434 AGTGTCAAATTCCT
1 AGTGTCAAATTCCT
333448 AGTGTCAAATTCCT
1 AGTGTCAAATTCCT
333462 AGTGTCAAA
1 AGTGTCAAA
333471 CCGACTCAAC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.32, C:0.19, G:0.16, T:0.32
Consensus pattern (14 bp):
AGTGTCAAATTCCT
Left flanking sequence: Indices 332934 -- 333433
GGTTGCAGAGGTGGCTGCAGCGGTAGGCAGAGGTTAAGCTGCAGAGGTGGCTGCAGAGGTAGGCT
GCAAAGGTTATTAATAGATACACAGCCACGGACGAGTAGGGGAGTAGGGGAGTAGGAGTAGGGGA
GTAGGAGTAGGGGAGTAGGAGTAGGGGAATGTTTCACTAGAAGGGGGAGTGGGTTTCTAGGAGTA
GAGAGTACGTTCGCTAAGAGTAGGGGAGTGGTTCACCAGGAGTAGGGGAGTGGTTCGCTAGAGGT
AGGGAAGTGGTTCGCTAAGTGTTGGTGAATAGGTTTCTAGGCGTAGGGAGTAAGTGAATATCGTC
TCAGGAGTACGCGTAGGGAGTAGGTTCGACCACGTTTACTCGGCAGATTCTCCAATCCTAACAAT
AGGCCATCCCACCGGTTTAGGTTCCGGTTAAGGTTGTGACGCCATCGATGCGTTTCTCCCTGGAA
TGATGCCGGGATGTACATTCCTGGAGCCAGTGTCAAATGCCCAGC
Right flanking sequence: Indices 333471 -- 333970
CCGACTCAACCCGTGGAAACGCGTCACTGTACGAATTGCGTCACTCTGGACACCCTACAGCAGGC
ACCTCCATCCCCATCCTCATCGTCCCACATCATCGGGCCACATTCCCCGCGCGCTTCGCCGTACT
ACCCCGCCACCCGTAACCCACCCGTAACCCCACCCGTAACCCCCACGTAAAACCCCCCAACTACA
ACCGCCTCGGTGTTCCCAATCCGTCCGCCTCGTGCATGGTTCATCTGCAGTCGCAGTAGTAACAG
ATCGCTCCGGGGAACCACTGGCCGCCCGCCCGTGGCGACCGAGGGAAAACAGCAGTGACCACCGG
GTCCCCCGCCCGCCAGAGCCCGTCCCCCACCCGTAGCCACCCGCCCTCCGCCCGTCCCGCGGCCG
CTCCGCGCTCCCCTGTTCCCCGCAGCGCCACTGCATTTTGTCAGGACGCGGCTGGCCTCACCACC
GCCGTCTAGCCGACCGCCCGCCTCGGCACTCGCTACGAAAACAAG
Found at i:333623 original size:11 final size:11
Alignment explanation
Indices: 333607--333642 Score: 63
Period size: 11 Copynumber: 3.2 Consensus size: 11
333597 TACTACCCCG
333607 CCACCCGTAAC
1 CCACCCGTAAC
333618 CCACCCGTAACC
1 CCACCCGTAA-C
333630 CCACCCGTAAC
1 CCACCCGTAAC
333641 CC
1 CC
333643 CCACGTAAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
11 13 0.54
12 11 0.46
ACGTcount: A:0.25, C:0.58, G:0.08, T:0.08
Consensus pattern (11 bp):
CCACCCGTAAC
Left flanking sequence: Indices 333107 -- 333606
GGGGAGTGGGTTTCTAGGAGTAGAGAGTACGTTCGCTAAGAGTAGGGGAGTGGTTCACCAGGAGT
AGGGGAGTGGTTCGCTAGAGGTAGGGAAGTGGTTCGCTAAGTGTTGGTGAATAGGTTTCTAGGCG
TAGGGAGTAAGTGAATATCGTCTCAGGAGTACGCGTAGGGAGTAGGTTCGACCACGTTTACTCGG
CAGATTCTCCAATCCTAACAATAGGCCATCCCACCGGTTTAGGTTCCGGTTAAGGTTGTGACGCC
ATCGATGCGTTTCTCCCTGGAATGATGCCGGGATGTACATTCCTGGAGCCAGTGTCAAATGCCCA
GCAGTGTCAAATTCCTAGTGTCAAATTCCTAGTGTCAAACCGACTCAACCCGTGGAAACGCGTCA
CTGTACGAATTGCGTCACTCTGGACACCCTACAGCAGGCACCTCCATCCCCATCCTCATCGTCCC
ACATCATCGGGCCACATTCCCCGCGCGCTTCGCCGTACTACCCCG
Right flanking sequence: Indices 333643 -- 334142
CCACGTAAAACCCCCCAACTACAACCGCCTCGGTGTTCCCAATCCGTCCGCCTCGTGCATGGTTC
ATCTGCAGTCGCAGTAGTAACAGATCGCTCCGGGGAACCACTGGCCGCCCGCCCGTGGCGACCGA
GGGAAAACAGCAGTGACCACCGGGTCCCCCGCCCGCCAGAGCCCGTCCCCCACCCGTAGCCACCC
GCCCTCCGCCCGTCCCGCGGCCGCTCCGCGCTCCCCTGTTCCCCGCAGCGCCACTGCATTTTGTC
AGGACGCGGCTGGCCTCACCACCGCCGTCTAGCCGACCGCCCGCCTCGGCACTCGCTACGAAAAC
AAGCCTACATCCACAGCCACCCCCATCCACCAATACACCACCCCCGTAGCCCCCGTAGCCCGCCC
GTCCCCCACCTTACACCTCCTCCCATCGTCGCATGCCCGGTGCACCATGACGCGTAACATTTTTT
CTGCCGCAACGATTTACACGCCGACGCAACCCCTAAAACTGCAAA
Found at i:333634 original size:12 final size:12
Alignment explanation
Indices: 333607--333643 Score: 67
Period size: 12 Copynumber: 3.2 Consensus size: 12
333597 TACTACCCCG
333607 CCACCCGTAA-C
1 CCACCCGTAACC
333618 CCACCCGTAACC
1 CCACCCGTAACC
333630 CCACCCGTAACC
1 CCACCCGTAACC
333642 CC
1 CC
333644 CACGTAAAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
11 10 0.40
12 15 0.60
ACGTcount: A:0.24, C:0.59, G:0.08, T:0.08
Consensus pattern (12 bp):
CCACCCGTAACC
Left flanking sequence: Indices 333107 -- 333606
GGGGAGTGGGTTTCTAGGAGTAGAGAGTACGTTCGCTAAGAGTAGGGGAGTGGTTCACCAGGAGT
AGGGGAGTGGTTCGCTAGAGGTAGGGAAGTGGTTCGCTAAGTGTTGGTGAATAGGTTTCTAGGCG
TAGGGAGTAAGTGAATATCGTCTCAGGAGTACGCGTAGGGAGTAGGTTCGACCACGTTTACTCGG
CAGATTCTCCAATCCTAACAATAGGCCATCCCACCGGTTTAGGTTCCGGTTAAGGTTGTGACGCC
ATCGATGCGTTTCTCCCTGGAATGATGCCGGGATGTACATTCCTGGAGCCAGTGTCAAATGCCCA
GCAGTGTCAAATTCCTAGTGTCAAATTCCTAGTGTCAAACCGACTCAACCCGTGGAAACGCGTCA
CTGTACGAATTGCGTCACTCTGGACACCCTACAGCAGGCACCTCCATCCCCATCCTCATCGTCCC
ACATCATCGGGCCACATTCCCCGCGCGCTTCGCCGTACTACCCCG
Right flanking sequence: Indices 333644 -- 334143
CACGTAAAACCCCCCAACTACAACCGCCTCGGTGTTCCCAATCCGTCCGCCTCGTGCATGGTTCA
TCTGCAGTCGCAGTAGTAACAGATCGCTCCGGGGAACCACTGGCCGCCCGCCCGTGGCGACCGAG
GGAAAACAGCAGTGACCACCGGGTCCCCCGCCCGCCAGAGCCCGTCCCCCACCCGTAGCCACCCG
CCCTCCGCCCGTCCCGCGGCCGCTCCGCGCTCCCCTGTTCCCCGCAGCGCCACTGCATTTTGTCA
GGACGCGGCTGGCCTCACCACCGCCGTCTAGCCGACCGCCCGCCTCGGCACTCGCTACGAAAACA
AGCCTACATCCACAGCCACCCCCATCCACCAATACACCACCCCCGTAGCCCCCGTAGCCCGCCCG
TCCCCCACCTTACACCTCCTCCCATCGTCGCATGCCCGGTGCACCATGACGCGTAACATTTTTTC
TGCCGCAACGATTTACACGCCGACGCAACCCCTAAAACTGCAAAC
Found at i:333634 original size:23 final size:23
Alignment explanation
Indices: 333607--333650 Score: 72
Period size: 23 Copynumber: 1.9 Consensus size: 23
333597 TACTACCCCG
333607 CCACCCGTAACCCACC-CGTAACC
1 CCACCCGTAACCC-CCACGTAACC
333630 CCACCCGTAACCCCCACGTAA
1 CCACCCGTAACCCCCACGTAA
333651 AACCCCCCAA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 2 0.10
23 18 0.90
ACGTcount: A:0.27, C:0.55, G:0.09, T:0.09
Consensus pattern (23 bp):
CCACCCGTAACCCCCACGTAACC
Left flanking sequence: Indices 333107 -- 333606
GGGGAGTGGGTTTCTAGGAGTAGAGAGTACGTTCGCTAAGAGTAGGGGAGTGGTTCACCAGGAGT
AGGGGAGTGGTTCGCTAGAGGTAGGGAAGTGGTTCGCTAAGTGTTGGTGAATAGGTTTCTAGGCG
TAGGGAGTAAGTGAATATCGTCTCAGGAGTACGCGTAGGGAGTAGGTTCGACCACGTTTACTCGG
CAGATTCTCCAATCCTAACAATAGGCCATCCCACCGGTTTAGGTTCCGGTTAAGGTTGTGACGCC
ATCGATGCGTTTCTCCCTGGAATGATGCCGGGATGTACATTCCTGGAGCCAGTGTCAAATGCCCA
GCAGTGTCAAATTCCTAGTGTCAAATTCCTAGTGTCAAACCGACTCAACCCGTGGAAACGCGTCA
CTGTACGAATTGCGTCACTCTGGACACCCTACAGCAGGCACCTCCATCCCCATCCTCATCGTCCC
ACATCATCGGGCCACATTCCCCGCGCGCTTCGCCGTACTACCCCG
Right flanking sequence: Indices 333651 -- 334150
AACCCCCCAACTACAACCGCCTCGGTGTTCCCAATCCGTCCGCCTCGTGCATGGTTCATCTGCAG
TCGCAGTAGTAACAGATCGCTCCGGGGAACCACTGGCCGCCCGCCCGTGGCGACCGAGGGAAAAC
AGCAGTGACCACCGGGTCCCCCGCCCGCCAGAGCCCGTCCCCCACCCGTAGCCACCCGCCCTCCG
CCCGTCCCGCGGCCGCTCCGCGCTCCCCTGTTCCCCGCAGCGCCACTGCATTTTGTCAGGACGCG
GCTGGCCTCACCACCGCCGTCTAGCCGACCGCCCGCCTCGGCACTCGCTACGAAAACAAGCCTAC
ATCCACAGCCACCCCCATCCACCAATACACCACCCCCGTAGCCCCCGTAGCCCGCCCGTCCCCCA
CCTTACACCTCCTCCCATCGTCGCATGCCCGGTGCACCATGACGCGTAACATTTTTTCTGCCGCA
ACGATTTACACGCCGACGCAACCCCTAAAACTGCAAACGAGTCGC
Found at i:334612 original size:9 final size:9
Alignment explanation
Indices: 334598--334663 Score: 50
Period size: 9 Copynumber: 7.7 Consensus size: 9
334588 ACTGGGCAAA
334598 AGTGAGAAG
1 AGTGAGAAG
334607 AGTGAG-A-
1 AGTGAGAAG
*
334614 A-TGAGAGG
1 AGTGAGAAG
*
334622 AGTGAGAGG
1 AGTGAGAAG
334631 AGTGA-AAGG
1 AGTGAGAA-G
*
334640 AGTGAGAGG
1 AGTGAGAAG
*
334649 GGTGAGAAG
1 AGTGAGAAG
*
334658 GGTGAG
1 AGTGAG
334664 GCTAAGGGTG
Statistics
Matches: 47, Mismatches: 5, Indels: 10
0.76 0.08 0.16
Matches are distributed among these distances:
6 4 0.09
7 1 0.02
8 3 0.06
9 38 0.81
10 1 0.02
ACGTcount: A:0.36, C:0.00, G:0.52, T:0.12
Consensus pattern (9 bp):
AGTGAGAAG
Left flanking sequence: Indices 334098 -- 334597
CTGCCGCAACGATTTACACGCCGACGCAACCCCTAAAACTGCAAACGAGTCGCACTCGCCCCCAC
TGACCTGTCGGGACTGCTGAGCCGCTCTTTCAACACACGCTGACGGCCATGGAGTATACTGCCGG
AGCCGTGCACCCGGCGCGGCTGCCCCAGCTCCTGGACGCCGAGTACATCGACCAGCTTCTCGCCG
AGATCGCGACGTTGAAACAGGCGGTGAAAACAAAGGACGCCTTGATCACCCAGTTGTGCGACACC
ATCAAGAACATCGGGCTGCCCAAGACCACGGCGTCGGCGCCCGACCTGCTCGAGCCGTCCGACGT
GCCGGCACGCTCGGCCCGCCGCCGCCAGTCGCTGCAGCCGGACGGGCACCGGCTTCTGGTGGCGT
CGCGCGACCGGGACGTGTACGACTCCGACCACTCGGAGCGACGGCGTGCGGACAAGCAGTTGTAC
GTGAAGAACGACAAGAGTGATTTGAGGAGTGAAAAACTGGGCAAA
Right flanking sequence: Indices 334664 -- 335163
GCTAAGGGTGAGGCCAGAGCTGACGCCACGACCGAGGCCAAGAACGATCCCTGGAACGAGCTCAA
TGACCACAGGAACGAGTACAGGAACGATCGCAAGAGCGTGAAGACTGGCTCCAAGACCGACTCCA
AGACCGACTCCAAGACCGAGCTGGGCGATTTCAAGACCGACAAGAACGAGTTCAAGAACGAGCAC
AGGGACGAGCCCAACGGTCCCAACGGTCCCAACGGTCCCAACGGTCCCAGAGCCGGTCTCGATCC
CAGAAACGACCCCAAAAACGAGCTTCGAACCGACCTCAGATCCGATCCCAGAACCGAGCTCAGAA
CCACATCCTCTGAGCTCGATCCCTCCGCCCATCCCTCCACTAATCCCTCCCGAGCCGACCACCTC
CCGGAGGAAAACGGCACCCGCCGGCTGTTGCGCATCCTGCTGGCCGCCAGCGAGCTCACAGCCCA
CTCGAACCTCCTGGCGGGCCTGGTGCTTCTGCCCGACACAGGCAC
Found at i:334642 original size:18 final size:19
Alignment explanation
Indices: 334598--334663 Score: 74
Period size: 18 Copynumber: 3.8 Consensus size: 19
334588 ACTGGGCAAA
334598 AGTGAGAA-GAGTGAGA--
1 AGTGAGAAGGAGTGAGAGG
334614 A-TGAG-AGGAGTGAGAGG
1 AGTGAGAAGGAGTGAGAGG
334631 AGTGA-AAGGAGTGAGAGG
1 AGTGAGAAGGAGTGAGAGG
*
334649 GGTGAGAAGG-GTGAG
1 AGTGAGAAGGAGTGAG
334664 GCTAAGGGTG
Statistics
Matches: 43, Mismatches: 1, Indels: 10
0.80 0.02 0.19
Matches are distributed among these distances:
14 1 0.02
15 12 0.28
16 1 0.02
17 1 0.02
18 24 0.56
19 4 0.09
ACGTcount: A:0.36, C:0.00, G:0.52, T:0.12
Consensus pattern (19 bp):
AGTGAGAAGGAGTGAGAGG
Left flanking sequence: Indices 334098 -- 334597
CTGCCGCAACGATTTACACGCCGACGCAACCCCTAAAACTGCAAACGAGTCGCACTCGCCCCCAC
TGACCTGTCGGGACTGCTGAGCCGCTCTTTCAACACACGCTGACGGCCATGGAGTATACTGCCGG
AGCCGTGCACCCGGCGCGGCTGCCCCAGCTCCTGGACGCCGAGTACATCGACCAGCTTCTCGCCG
AGATCGCGACGTTGAAACAGGCGGTGAAAACAAAGGACGCCTTGATCACCCAGTTGTGCGACACC
ATCAAGAACATCGGGCTGCCCAAGACCACGGCGTCGGCGCCCGACCTGCTCGAGCCGTCCGACGT
GCCGGCACGCTCGGCCCGCCGCCGCCAGTCGCTGCAGCCGGACGGGCACCGGCTTCTGGTGGCGT
CGCGCGACCGGGACGTGTACGACTCCGACCACTCGGAGCGACGGCGTGCGGACAAGCAGTTGTAC
GTGAAGAACGACAAGAGTGATTTGAGGAGTGAAAAACTGGGCAAA
Right flanking sequence: Indices 334664 -- 335163
GCTAAGGGTGAGGCCAGAGCTGACGCCACGACCGAGGCCAAGAACGATCCCTGGAACGAGCTCAA
TGACCACAGGAACGAGTACAGGAACGATCGCAAGAGCGTGAAGACTGGCTCCAAGACCGACTCCA
AGACCGACTCCAAGACCGAGCTGGGCGATTTCAAGACCGACAAGAACGAGTTCAAGAACGAGCAC
AGGGACGAGCCCAACGGTCCCAACGGTCCCAACGGTCCCAACGGTCCCAGAGCCGGTCTCGATCC
CAGAAACGACCCCAAAAACGAGCTTCGAACCGACCTCAGATCCGATCCCAGAACCGAGCTCAGAA
CCACATCCTCTGAGCTCGATCCCTCCGCCCATCCCTCCACTAATCCCTCCCGAGCCGACCACCTC
CCGGAGGAAAACGGCACCCGCCGGCTGTTGCGCATCCTGCTGGCCGCCAGCGAGCTCACAGCCCA
CTCGAACCTCCTGGCGGGCCTGGTGCTTCTGCCCGACACAGGCAC
Found at i:334792 original size:12 final size:12
Alignment explanation
Indices: 334777--334812 Score: 72
Period size: 12 Copynumber: 3.0 Consensus size: 12
334767 TGAAGACTGG
334777 CTCCAAGACCGA
1 CTCCAAGACCGA
334789 CTCCAAGACCGA
1 CTCCAAGACCGA
334801 CTCCAAGACCGA
1 CTCCAAGACCGA
334813 GCTGGGCGAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 24 1.00
ACGTcount: A:0.33, C:0.42, G:0.17, T:0.08
Consensus pattern (12 bp):
CTCCAAGACCGA
Left flanking sequence: Indices 334277 -- 334776
GACCAGCTTCTCGCCGAGATCGCGACGTTGAAACAGGCGGTGAAAACAAAGGACGCCTTGATCAC
CCAGTTGTGCGACACCATCAAGAACATCGGGCTGCCCAAGACCACGGCGTCGGCGCCCGACCTGC
TCGAGCCGTCCGACGTGCCGGCACGCTCGGCCCGCCGCCGCCAGTCGCTGCAGCCGGACGGGCAC
CGGCTTCTGGTGGCGTCGCGCGACCGGGACGTGTACGACTCCGACCACTCGGAGCGACGGCGTGC
GGACAAGCAGTTGTACGTGAAGAACGACAAGAGTGATTTGAGGAGTGAAAAACTGGGCAAAAGTG
AGAAGAGTGAGAATGAGAGGAGTGAGAGGAGTGAAAGGAGTGAGAGGGGTGAGAAGGGTGAGGCT
AAGGGTGAGGCCAGAGCTGACGCCACGACCGAGGCCAAGAACGATCCCTGGAACGAGCTCAATGA
CCACAGGAACGAGTACAGGAACGATCGCAAGAGCGTGAAGACTGG
Right flanking sequence: Indices 334813 -- 335312
GCTGGGCGATTTCAAGACCGACAAGAACGAGTTCAAGAACGAGCACAGGGACGAGCCCAACGGTC
CCAACGGTCCCAACGGTCCCAACGGTCCCAGAGCCGGTCTCGATCCCAGAAACGACCCCAAAAAC
GAGCTTCGAACCGACCTCAGATCCGATCCCAGAACCGAGCTCAGAACCACATCCTCTGAGCTCGA
TCCCTCCGCCCATCCCTCCACTAATCCCTCCCGAGCCGACCACCTCCCGGAGGAAAACGGCACCC
GCCGGCTGTTGCGCATCCTGCTGGCCGCCAGCGAGCTCACAGCCCACTCGAACCTCCTGGCGGGC
CTGGTGCTTCTGCCCGACACAGGCACCCCCGTGGAGGCCACCCACCCGACGTTGAAGCCGCTGGG
ACTGGCCAACCTGGTGCTGCTGTACAAACTGCGCATCCGCTTGCCCTACACCCTCGCCAACAAGC
TGAACGACGACTGGCGGCGCTCGGGCGGCGAGACGGGCCTGACAC
Found at i:334882 original size:9 final size:9
Alignment explanation
Indices: 334868--334907 Score: 80
Period size: 9 Copynumber: 4.4 Consensus size: 9
334858 CAGGGACGAG
334868 CCCAACGGT
1 CCCAACGGT
334877 CCCAACGGT
1 CCCAACGGT
334886 CCCAACGGT
1 CCCAACGGT
334895 CCCAACGGT
1 CCCAACGGT
334904 CCCA
1 CCCA
334908 GAGCCGGTCT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 31 1.00
ACGTcount: A:0.23, C:0.47, G:0.20, T:0.10
Consensus pattern (9 bp):
CCCAACGGT
Left flanking sequence: Indices 334368 -- 334867
TCGGGCTGCCCAAGACCACGGCGTCGGCGCCCGACCTGCTCGAGCCGTCCGACGTGCCGGCACGC
TCGGCCCGCCGCCGCCAGTCGCTGCAGCCGGACGGGCACCGGCTTCTGGTGGCGTCGCGCGACCG
GGACGTGTACGACTCCGACCACTCGGAGCGACGGCGTGCGGACAAGCAGTTGTACGTGAAGAACG
ACAAGAGTGATTTGAGGAGTGAAAAACTGGGCAAAAGTGAGAAGAGTGAGAATGAGAGGAGTGAG
AGGAGTGAAAGGAGTGAGAGGGGTGAGAAGGGTGAGGCTAAGGGTGAGGCCAGAGCTGACGCCAC
GACCGAGGCCAAGAACGATCCCTGGAACGAGCTCAATGACCACAGGAACGAGTACAGGAACGATC
GCAAGAGCGTGAAGACTGGCTCCAAGACCGACTCCAAGACCGACTCCAAGACCGAGCTGGGCGAT
TTCAAGACCGACAAGAACGAGTTCAAGAACGAGCACAGGGACGAG
Right flanking sequence: Indices 334908 -- 335407
GAGCCGGTCTCGATCCCAGAAACGACCCCAAAAACGAGCTTCGAACCGACCTCAGATCCGATCCC
AGAACCGAGCTCAGAACCACATCCTCTGAGCTCGATCCCTCCGCCCATCCCTCCACTAATCCCTC
CCGAGCCGACCACCTCCCGGAGGAAAACGGCACCCGCCGGCTGTTGCGCATCCTGCTGGCCGCCA
GCGAGCTCACAGCCCACTCGAACCTCCTGGCGGGCCTGGTGCTTCTGCCCGACACAGGCACCCCC
GTGGAGGCCACCCACCCGACGTTGAAGCCGCTGGGACTGGCCAACCTGGTGCTGCTGTACAAACT
GCGCATCCGCTTGCCCTACACCCTCGCCAACAAGCTGAACGACGACTGGCGGCGCTCGGGCGGCG
AGACGGGCCTGACACTCGAGTTGTCGCGCGCACTGAGCACCACCCCCGTCGAGGAAGAGGTGGCA
GAGCCGCCGCAGCTGCCGCAGGGCCTGCTGGCGCTCCTCACCCAC
Found at i:335995 original size:27 final size:27
Alignment explanation
Indices: 335954--336007 Score: 90
Period size: 27 Copynumber: 2.0 Consensus size: 27
335944 AGGTGCTCAA
* *
335954 AGAGACTACTTGCAGGCTTCACCGGGC
1 AGAGACTACTCGCAGGCCTCACCGGGC
335981 AGAGACTACTCGCAGGCCTCACCGGGC
1 AGAGACTACTCGCAGGCCTCACCGGGC
336008 CGCTCGGTGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.22, C:0.33, G:0.30, T:0.15
Consensus pattern (27 bp):
AGAGACTACTCGCAGGCCTCACCGGGC
Left flanking sequence: Indices 335454 -- 335953
AGCCGCCGGTGGCCAACCCCTACGCCATGCCCACCGCCCGCTCGCACCCGCCGCCGCTCTCGCGC
GACCCCAGCAACCCGGAAAGCACCTACAGCACCTACAGCGACCACAGCCATGACGACGCCCACGA
CCACCCGCTCGAGACCTCGAAGCACCCCTACAGCCGTCACCTGGCCCAGTCGGGCGAGTACCTGC
TTGCCAAGGGCCCCGTGGCGCCCGACGAGGACGGTGACGTCACTCCGAAGCAGTTCCCGGCCGCG
GGCCCGTCGCTCGACCCGGCGCCGGGCTCGGCGAGCACGTTGCTGCCGCTTCCGCACCGAGACCA
CGACGAGGTTGGCTCGCGGCTTGGTGACGACTTGGGCCGCAGGGCCGAGTTTGGCCTGCCGGGCC
ATATGACGTCACCGGGTCGGTCGATACACGGCCACACGCAGAGGTCAGAGCACACGGTGATGTCT
CCAGGCTCGCAAAGGGACCACTTGCAGGCTTCGCCAGGTGCTCAA
Right flanking sequence: Indices 336008 -- 336507
CGCTCGGTGATGTCACCTGGCCACCCGCAACCGGGCCACTCGCAACCGGGCCACTCGCAACCAGA
CCACTTGCAAGCCTCGCCAGACTCGCACGTCTCTCCCGACCACTCGCACGTCTCGCCTGACCACT
CGCACACGTCCCCTAGACCGTCCCGAACGTCGCCTCGGGTCATGCAAAAGCAACGGGCCCAGGGA
TCGCCTCGTGGCCCCCGGCCCGAATACGAGCCACCCGCTGCCAGCCGCGGCCCGCTGAGCGCCCA
CAGCCCAGCGCTGGCCTACCTGACCGACAGCGCACCAGTGGCAGCAGGGCCTGTTCCCCAGGTGC
CCGCGACACCGGACGCCTTCACGGGGCGCCGGCTCTCGCACCGCGACCTGCTGGGCGACAACCTG
GCGGTGACGCTGCCGCAGGGCCAGGGGTTGCTGCCACCGTACCGTGCTGAGCGCGGGCCCGCGTT
GACCGGGCAGGTGGCGCCGCAGCACGTGCTGGCGCCCCAGCTTCC
Found at i:336077 original size:15 final size:15
Alignment explanation
Indices: 336026--336069 Score: 79
Period size: 15 Copynumber: 2.9 Consensus size: 15
336016 GATGTCACCT
*
336026 GGCCACCCGCAACCG
1 GGCCACTCGCAACCG
336041 GGCCACTCGCAACCG
1 GGCCACTCGCAACCG
336056 GGCCACTCGCAACC
1 GGCCACTCGCAACC
336070 AGACCACTTG
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
15 28 1.00
ACGTcount: A:0.20, C:0.50, G:0.25, T:0.05
Consensus pattern (15 bp):
GGCCACTCGCAACCG
Left flanking sequence: Indices 335526 -- 336025
GCAACCCGGAAAGCACCTACAGCACCTACAGCGACCACAGCCATGACGACGCCCACGACCACCCG
CTCGAGACCTCGAAGCACCCCTACAGCCGTCACCTGGCCCAGTCGGGCGAGTACCTGCTTGCCAA
GGGCCCCGTGGCGCCCGACGAGGACGGTGACGTCACTCCGAAGCAGTTCCCGGCCGCGGGCCCGT
CGCTCGACCCGGCGCCGGGCTCGGCGAGCACGTTGCTGCCGCTTCCGCACCGAGACCACGACGAG
GTTGGCTCGCGGCTTGGTGACGACTTGGGCCGCAGGGCCGAGTTTGGCCTGCCGGGCCATATGAC
GTCACCGGGTCGGTCGATACACGGCCACACGCAGAGGTCAGAGCACACGGTGATGTCTCCAGGCT
CGCAAAGGGACCACTTGCAGGCTTCGCCAGGTGCTCAAAGAGACTACTTGCAGGCTTCACCGGGC
AGAGACTACTCGCAGGCCTCACCGGGCCGCTCGGTGATGTCACCT
Right flanking sequence: Indices 336070 -- 336569
AGACCACTTGCAAGCCTCGCCAGACTCGCACGTCTCTCCCGACCACTCGCACGTCTCGCCTGACC
ACTCGCACACGTCCCCTAGACCGTCCCGAACGTCGCCTCGGGTCATGCAAAAGCAACGGGCCCAG
GGATCGCCTCGTGGCCCCCGGCCCGAATACGAGCCACCCGCTGCCAGCCGCGGCCCGCTGAGCGC
CCACAGCCCAGCGCTGGCCTACCTGACCGACAGCGCACCAGTGGCAGCAGGGCCTGTTCCCCAGG
TGCCCGCGACACCGGACGCCTTCACGGGGCGCCGGCTCTCGCACCGCGACCTGCTGGGCGACAAC
CTGGCGGTGACGCTGCCGCAGGGCCAGGGGTTGCTGCCACCGTACCGTGCTGAGCGCGGGCCCGC
GTTGACCGGGCAGGTGGCGCCGCAGCACGTGCTGGCGCCCCAGCTTCCCCACCGGTTGGATCTGC
CGCACTTGGCGGTGGCTGGCGTCACCACGCCCAAGACCGGGTCGT
Found at i:336077 original size:30 final size:30
Alignment explanation
Indices: 336026--336082 Score: 78
Period size: 30 Copynumber: 1.9 Consensus size: 30
336016 GATGTCACCT
* *
336026 GGCCACCCGCAACCGGGCCACTCGCAACCG
1 GGCCACCCGCAACCAGACCACTCGCAACCG
* *
336056 GGCCACTCGCAACCAGACCACTTGCAA
1 GGCCACCCGCAACCAGACCACTCGCAA
336083 GCCTCGCCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 23 1.00
ACGTcount: A:0.25, C:0.46, G:0.23, T:0.07
Consensus pattern (30 bp):
GGCCACCCGCAACCAGACCACTCGCAACCG
Left flanking sequence: Indices 335526 -- 336025
GCAACCCGGAAAGCACCTACAGCACCTACAGCGACCACAGCCATGACGACGCCCACGACCACCCG
CTCGAGACCTCGAAGCACCCCTACAGCCGTCACCTGGCCCAGTCGGGCGAGTACCTGCTTGCCAA
GGGCCCCGTGGCGCCCGACGAGGACGGTGACGTCACTCCGAAGCAGTTCCCGGCCGCGGGCCCGT
CGCTCGACCCGGCGCCGGGCTCGGCGAGCACGTTGCTGCCGCTTCCGCACCGAGACCACGACGAG
GTTGGCTCGCGGCTTGGTGACGACTTGGGCCGCAGGGCCGAGTTTGGCCTGCCGGGCCATATGAC
GTCACCGGGTCGGTCGATACACGGCCACACGCAGAGGTCAGAGCACACGGTGATGTCTCCAGGCT
CGCAAAGGGACCACTTGCAGGCTTCGCCAGGTGCTCAAAGAGACTACTTGCAGGCTTCACCGGGC
AGAGACTACTCGCAGGCCTCACCGGGCCGCTCGGTGATGTCACCT
Right flanking sequence: Indices 336083 -- 336582
GCCTCGCCAGACTCGCACGTCTCTCCCGACCACTCGCACGTCTCGCCTGACCACTCGCACACGTC
CCCTAGACCGTCCCGAACGTCGCCTCGGGTCATGCAAAAGCAACGGGCCCAGGGATCGCCTCGTG
GCCCCCGGCCCGAATACGAGCCACCCGCTGCCAGCCGCGGCCCGCTGAGCGCCCACAGCCCAGCG
CTGGCCTACCTGACCGACAGCGCACCAGTGGCAGCAGGGCCTGTTCCCCAGGTGCCCGCGACACC
GGACGCCTTCACGGGGCGCCGGCTCTCGCACCGCGACCTGCTGGGCGACAACCTGGCGGTGACGC
TGCCGCAGGGCCAGGGGTTGCTGCCACCGTACCGTGCTGAGCGCGGGCCCGCGTTGACCGGGCAG
GTGGCGCCGCAGCACGTGCTGGCGCCCCAGCTTCCCCACCGGTTGGATCTGCCGCACTTGGCGGT
GGCTGGCGTCACCACGCCCAAGACCGGGTCGTTCCAGGTGTTGCT
Found at i:336082 original size:15 final size:15
Alignment explanation
Indices: 336028--336082 Score: 56
Period size: 15 Copynumber: 3.7 Consensus size: 15
336018 TGTCACCTGG
* * *
336028 CCACCCGCAACCGGG
1 CCACTCGCAACCAGA
* *
336043 CCACTCGCAACCGGG
1 CCACTCGCAACCAGA
336058 CCACTCGCAACCAGA
1 CCACTCGCAACCAGA
*
336073 CCACTTGCAA
1 CCACTCGCAA
336083 GCCTCGCCAG
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 36 1.00
ACGTcount: A:0.25, C:0.47, G:0.20, T:0.07
Consensus pattern (15 bp):
CCACTCGCAACCAGA
Left flanking sequence: Indices 335528 -- 336027
AACCCGGAAAGCACCTACAGCACCTACAGCGACCACAGCCATGACGACGCCCACGACCACCCGCT
CGAGACCTCGAAGCACCCCTACAGCCGTCACCTGGCCCAGTCGGGCGAGTACCTGCTTGCCAAGG
GCCCCGTGGCGCCCGACGAGGACGGTGACGTCACTCCGAAGCAGTTCCCGGCCGCGGGCCCGTCG
CTCGACCCGGCGCCGGGCTCGGCGAGCACGTTGCTGCCGCTTCCGCACCGAGACCACGACGAGGT
TGGCTCGCGGCTTGGTGACGACTTGGGCCGCAGGGCCGAGTTTGGCCTGCCGGGCCATATGACGT
CACCGGGTCGGTCGATACACGGCCACACGCAGAGGTCAGAGCACACGGTGATGTCTCCAGGCTCG
CAAAGGGACCACTTGCAGGCTTCGCCAGGTGCTCAAAGAGACTACTTGCAGGCTTCACCGGGCAG
AGACTACTCGCAGGCCTCACCGGGCCGCTCGGTGATGTCACCTGG
Right flanking sequence: Indices 336083 -- 336582
GCCTCGCCAGACTCGCACGTCTCTCCCGACCACTCGCACGTCTCGCCTGACCACTCGCACACGTC
CCCTAGACCGTCCCGAACGTCGCCTCGGGTCATGCAAAAGCAACGGGCCCAGGGATCGCCTCGTG
GCCCCCGGCCCGAATACGAGCCACCCGCTGCCAGCCGCGGCCCGCTGAGCGCCCACAGCCCAGCG
CTGGCCTACCTGACCGACAGCGCACCAGTGGCAGCAGGGCCTGTTCCCCAGGTGCCCGCGACACC
GGACGCCTTCACGGGGCGCCGGCTCTCGCACCGCGACCTGCTGGGCGACAACCTGGCGGTGACGC
TGCCGCAGGGCCAGGGGTTGCTGCCACCGTACCGTGCTGAGCGCGGGCCCGCGTTGACCGGGCAG
GTGGCGCCGCAGCACGTGCTGGCGCCCCAGCTTCCCCACCGGTTGGATCTGCCGCACTTGGCGGT
GGCTGGCGTCACCACGCCCAAGACCGGGTCGTTCCAGGTGTTGCT
Found at i:336119 original size:21 final size:21
Alignment explanation
Indices: 336093--336142 Score: 82
Period size: 21 Copynumber: 2.4 Consensus size: 21
336083 GCCTCGCCAG
*
336093 ACTCGCACGTCTCTCCCGACC
1 ACTCGCACGTCTCGCCCGACC
*
336114 ACTCGCACGTCTCGCCTGACC
1 ACTCGCACGTCTCGCCCGACC
336135 ACTCGCAC
1 ACTCGCAC
336143 ACGTCCCCTA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.16, C:0.50, G:0.16, T:0.18
Consensus pattern (21 bp):
ACTCGCACGTCTCGCCCGACC
Left flanking sequence: Indices 335593 -- 336092
CGAGACCTCGAAGCACCCCTACAGCCGTCACCTGGCCCAGTCGGGCGAGTACCTGCTTGCCAAGG
GCCCCGTGGCGCCCGACGAGGACGGTGACGTCACTCCGAAGCAGTTCCCGGCCGCGGGCCCGTCG
CTCGACCCGGCGCCGGGCTCGGCGAGCACGTTGCTGCCGCTTCCGCACCGAGACCACGACGAGGT
TGGCTCGCGGCTTGGTGACGACTTGGGCCGCAGGGCCGAGTTTGGCCTGCCGGGCCATATGACGT
CACCGGGTCGGTCGATACACGGCCACACGCAGAGGTCAGAGCACACGGTGATGTCTCCAGGCTCG
CAAAGGGACCACTTGCAGGCTTCGCCAGGTGCTCAAAGAGACTACTTGCAGGCTTCACCGGGCAG
AGACTACTCGCAGGCCTCACCGGGCCGCTCGGTGATGTCACCTGGCCACCCGCAACCGGGCCACT
CGCAACCGGGCCACTCGCAACCAGACCACTTGCAAGCCTCGCCAG
Right flanking sequence: Indices 336143 -- 336642
ACGTCCCCTAGACCGTCCCGAACGTCGCCTCGGGTCATGCAAAAGCAACGGGCCCAGGGATCGCC
TCGTGGCCCCCGGCCCGAATACGAGCCACCCGCTGCCAGCCGCGGCCCGCTGAGCGCCCACAGCC
CAGCGCTGGCCTACCTGACCGACAGCGCACCAGTGGCAGCAGGGCCTGTTCCCCAGGTGCCCGCG
ACACCGGACGCCTTCACGGGGCGCCGGCTCTCGCACCGCGACCTGCTGGGCGACAACCTGGCGGT
GACGCTGCCGCAGGGCCAGGGGTTGCTGCCACCGTACCGTGCTGAGCGCGGGCCCGCGTTGACCG
GGCAGGTGGCGCCGCAGCACGTGCTGGCGCCCCAGCTTCCCCACCGGTTGGATCTGCCGCACTTG
GCGGTGGCTGGCGTCACCACGCCCAAGACCGGGTCGTTCCAGGTGTTGCTGCTGCCCCAGCCCGA
CGACGACCTCGCGCTGTTGTTCATCAAGCCCGACGACTTTGCCCT
Found at i:337495 original size:26 final size:21
Alignment explanation
Indices: 337444--337522 Score: 122
Period size: 21 Copynumber: 3.8 Consensus size: 21
337434 CGCTGTACGC
337444 GGCACTGCACCGCGAGTCCCA
1 GGCACTGCACCGCGAGTCCCA
337465 GGCACTGCACCGCGAGTCCCA
1 GGCACTGCACCGCGAGTCCCA
*
337486 GGCGCTGCACCGCGAGTCCCA
1 GGCACTGCACCGCGAGTCCCA
* * *
337507 GACGCTGTACCGCGAG
1 GGCACTGCACCGCGAG
337523 CGGGACACCA
Statistics
Matches: 55, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 55 1.00
ACGTcount: A:0.18, C:0.41, G:0.32, T:0.10
Consensus pattern (21 bp):
GGCACTGCACCGCGAGTCCCA
Left flanking sequence: Indices 336944 -- 337443
TTTGCCTTCCCGCACGTGCCGCAGATGACGCTTGTGCGGTTGTGCCGCTTCCTCCTGCTTGACTT
TGTCAACCCGTTGGACGACAACCGGCTGGGCGCCCGCAAGGAGGGCTACCTCTTGCGGCGCTACA
AGGGGTTGGGCACGCTGTGGCGGGTGCGGTGGTGCCAGGTGGACGGGCCGCACATCGAGGTGTAC
GAGTACCCCAGCGGCCCGTTGATGGAGCTGGTGCGGCTCGCTGGGGCCCAGATCGGGCGCCAGAA
CCTGGACCTGGTGGCAGACGACAAGGGCTACCGCCACGCGTTCTTGGTGATGGAGGCGCGGCCCA
ACACCAAGGTGCTGCTGTTGCCCAAGCACTTCTTCTGCGCCGAAACCGACGAGGAGCGCGACGCG
TGGGTCGACGTGTTGTTGGAGTACAACGACCCGGCGCTGCCGGACCAGCCGCCGGACGACCACCG
CGTGAGCCTGGGCCTGAGCCACCGCGAGCTGCAGTCGCTGTACGC
Right flanking sequence: Indices 337523 -- 338022
CGGGACACCAGCGGCAGCACTATCGGGACCGGGGCCTACGGCAACTACACCAGCGACGCGCTGCC
CGCCACCCTGGTGGGCACGGTGGCCACCGAGGAGAAAAAGAAGAAAAAGAGCCTCTTCCCCTTCC
GCTACCGGCTGTCCAACGGCACCGTGGACGACATCCCCGCGGCCCAGGCGCCGCTCTCGCTGCTG
CTCTCGCAGTCGCTCCAGGGCCTCCAGCAGCTGCTCACCGGGGCCCCCGTGGCCCAGCAGGTGGC
GGCACCCAACGCCAGCCGCGACGCGGTGGCCCAGCCGCACACCCCGAACCAGCCCAACCTGATGC
AGCGGTACATCGACCAGCTCACCCAGGAGGAGAACAACCACATCCAGGCGGTGTTTGGGCGCGAC
CTCTACGACGTGTACCAGCTCCTGCACCACCGGTTGGGCCCGCACCTGGTGCCGAGCATTGTGTT
CCGGTGCATCGACTACCTCACCAAGACGGGCGCGGTGTACGAGGA
Found at i:339811 original size:15 final size:15
Alignment explanation
Indices: 339791--339832 Score: 75
Period size: 15 Copynumber: 2.8 Consensus size: 15
339781 ACGCTCCCAA
339791 GGCCAACCCGTTCGG
1 GGCCAACCCGTTCGG
339806 GGCCAACCCGTTCGG
1 GGCCAACCCGTTCGG
*
339821 AGCCAACCCGTT
1 GGCCAACCCGTT
339833 TGCCAAGACC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
15 26 1.00
ACGTcount: A:0.17, C:0.40, G:0.29, T:0.14
Consensus pattern (15 bp):
GGCCAACCCGTTCGG
Left flanking sequence: Indices 339291 -- 339790
GCCACCTCCACCATGTCGTCCCACGATGAGTACTCCTCGGACGAGGAAGAGGACTTCTCCCAGTC
CGGCCTGCCGGTCGTGCTCGGGTTCACCGACATCCCCATCGCCGAGCTTGGTGCCGACGAGCCCG
TCACCATCGAGGAAACCTTCATCGGAGGCGAGCCGCGATGGCTCCACCCAGAGCTGAAACCAGAC
CCCAAGTTGTTAACATGTGGCAACTGCGGCAAGCAGATGGCGTTGTTGCTCCAGGCGTACGCGCC
AATTGACGGCCACGACTACGACCGCGTCATCTACGTGTTTGGCTGCAAAAACACCGCCGGTTGCT
CCAAGCACAAGGGCTCGGTGCGTGCCATCAGAGGCATCAGCAAGGACCCCGAGCGGGTGGCCCAG
ATCAAGCTGGAGCTCGAGGACCAGTTGAACGCCGACATGGAGGCCAAGCTCAAGCTCGACGCCAA
GCCGTTTGCCGCGAACCCGTTTGCCAAGACGGGTGACGCTCCCAA
Right flanking sequence: Indices 339833 -- 340332
TGCCAAGACCGAGGCGGAGAAGCCTGCCGAGACCGTTGCTGAGACCGCTGAGGCCAAAACCTTCC
CCGTGACCGTGGTACCCGACACCGCCATCGATGGGTACGCTGGGTTCTTGGTCTACACCGAGAAG
GAGCGCCTCAAAAAGGCCCTGGAAGACCCCGACCTCAAAAAGTACAAGCACCTCATCGACGAGAT
GGAGGCCGACGACGAGGACCCGTCACCGTCGAAACGCCGCGACTCGACGGCGCTGAACCAGCCCG
TGCTTGACCCGAGCACCGCCGCGGCGTTGGACGACAAGTACTTTGAGCAGTTCACCAACACCGTG
GGCCACAACCCGGGCCAGGTGCTCCGGTACCAGTTGGGCGGGCACCCGTTGCTCTACAGCGGCAA
GGACGAGGTGGCGTCCAAGTTCATCTCCAAGGACGGCACCACCAGCGTGCCTCGTCCCGGGTACA
ACCCGCTGGGGCTGCGGCGGTTCGAGCTCCAGTTGATGCCCAAGG
Found at i:342482 original size:12 final size:12
Alignment explanation
Indices: 342465--342489 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
342455 TTGCTGCATT
342465 TTGGCCTTCATC
1 TTGGCCTTCATC
342477 TTGGCCTTCATC
1 TTGGCCTTCATC
342489 T
1 T
342490 GTTTGTAGGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.08, C:0.32, G:0.16, T:0.44
Consensus pattern (12 bp):
TTGGCCTTCATC
Left flanking sequence: Indices 341965 -- 342464
CAGGGGTGTCGAGCACCGCGATCCGCTTGCCCAGCACGGGCGCCTTGACCGAGAACGCACCGATG
TGCTGGGTGATGCCGCCAAACTCCTGGTCCACCACCGACAGCTTCCGAAGAAAGTCAAGGATGGT
GGTCTTGCCGTGGTCGACGTGGCCCATGATGGTCACCACCGGTGGCCGTGGCTTCACGAGCTTCT
CATTCACGGGCGCGGGGAAGAGGTCGTCGTTGCCCTTGGTCAGGAACTCGACGTCGAACCCGTAC
TCGTCCGCAATCAAACTGGCGTTTTCCTTGGTCAAAATGTAGTTGTGTCTCATCCCCTCAAACCC
GTAGCCTTCGAGCGTTTGGTACACCTTGTTGAGGGGCACCTGGATCACCCCTGCCAAACTGGCCA
CCAGGATCAGCGGGGGCAACTTGAGCTTGACGCGGTCTTTGCTCACTGCCTCGGTCTTCTTCTTG
CTCTTGGAGGCCGTCGCAGGCCCCTTCGAGGTTGTTTGCTGCATT
Right flanking sequence: Indices 342490 -- 342989
GTTTGTAGGCCTCGGCCTTCTCCCGCTCGATCTCGGCAGCAGACTTTTGCGCAGGTGCCTTGGGT
GCCGCGGCCGCGGGAGCAGCAGGCTTCTTGTTGGCTTTGTTGGCGTTGCCACCCTGTTTCGGCTT
GTGGGTGGGCTTGTTCTGTTTGGGACCATCGAACATTTGGGCAAACCGGTTCGGTTTAGCCGCTC
CCCCAGCCTGGTTGCCCGCTGGTGGGTTGCCTGGCACCTTGGGGAGCTTCTTCAATATGGAATAA
CATCGCAACAGCGGGGCCCGGGCCCCGTACCGTGCTGCTGAAAACATACTGGTGCCTCAGACATG
GCACATTTTTCGGTGGTTGCAAATGCACGGTGCGCAGGGCACATAACGTCGGTAGTAACCGGGAT
ATGGAAAGATAAAGCTAGATCGTATAATACATTACTTACTCGACGTACTGGGCGTACTCCGGGTT
TTCCTTCACCTTCAGGTTCAAGAACTTCTCCAACTTGGTGGCGTT
Found at i:347747 original size:7 final size:7
Alignment explanation
Indices: 347737--347776 Score: 73
Period size: 7 Copynumber: 5.9 Consensus size: 7
347727 AGAAGGATGG
347737 GGTGGAT
1 GGTGGAT
347744 GGTGGAT
1 GGTGGAT
347751 GGTGGAT
1 GGTGGAT
347758 GGTGG-T
1 GGTGGAT
347764 GGTGGAT
1 GGTGGAT
347771 GGTGGA
1 GGTGGA
347777 GTAGAATGAG
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
6 6 0.19
7 26 0.81
ACGTcount: A:0.12, C:0.00, G:0.60, T:0.28
Consensus pattern (7 bp):
GGTGGAT
Left flanking sequence: Indices 347237 -- 347736
CTTGGAGCCGCTGGTGTACGTGACCCTGTACCGGATCAAGCTGTCGATGAAGAAGGCCACCGTCG
TCAACCGGTTTGTGCGCGGGTTGGGGGTCAAGGCTGCCATCAACCAGTTGCACTTTAACCCCAAG
AAGATGTCCACCGAGTTGGAGCAGTTGTTGAAGCGCGGGTTGGACCAGGCCACCGAGCTTGGCTT
GAACGCCGACGGGATGTACATCCACGCGGTGTGGGTGGGCCTGGACGGCGGCTGGCGCAAGCGTG
TTGACATCAAGGGCCGTGGGCGCATGGGGGTCATCCACCACCCCTACGTGCACTTGAAGGCGGTG
TTGAAGAGCGAGCAGACCAAGATGCGTCGCGAGTGGGAGAAGCAGCAGCAGAAGCAGCAGGCCAA
GCCGCGGATGTTTTTGAACAACGAGCCGTTGAACTTCAAGGTGCGCGGGTTCTACAAGTGGTAGT
CATGTACATAGTCATAGGGATAAACGTTAGAACGAAGAAGGATGG
Right flanking sequence: Indices 347777 -- 348276
GTAGAATGAGTGAGAAAGAGGAAAGAGAAAGACACGAGTACGAAAAAAGAATACAATAATCAAAC
CAGATTCAGTCCAAAGGATTGAAGACCATAGATCCAACCCTCAACACTACCTAAGGAGCGGTCCT
ACATTCAACCTGCCCCCCGGATTCAACCAGTTATTTCACTAATATTTTCAAACCCAATTCATTCA
CACCATCTATACCACCACCACATTACCCCACATTACCCACATTACCACCCATCATCACAAAACAC
CCTCTCCGCATCACACCTACCATCCTAACTAAATTCGCGCATCAGCCAATTTTCATGCTAGCCTA
CCTTGTGCCGCTAGGGTTGTTCGCGATCGTAGTGCGACTCTTTTTAGCAAACCCAGACCCCCCAG
CGATAGCGATGTCTAGTTTACCTGCGATCCGCGTGGCGGCCAAGGCGCCGCTGGCTGCCATCATC
TTCTTGCACGGGCTCGGCGACTCCGGCGACGGGTGGCTGTGGTTC
Found at i:347768 original size:20 final size:21
Alignment explanation
Indices: 347737--347776 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 21
347727 AGAAGGATGG
347737 GGTGGATGGTGGATGGTGGAT
1 GGTGGATGGTGGATGGTGGAT
347758 GGTGG-TGGTGGATGGTGGA
1 GGTGGATGGTGGATGGTGGA
347777 GTAGAATGAG
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 14 0.74
21 5 0.26
ACGTcount: A:0.12, C:0.00, G:0.60, T:0.28
Consensus pattern (21 bp):
GGTGGATGGTGGATGGTGGAT
Left flanking sequence: Indices 347237 -- 347736
CTTGGAGCCGCTGGTGTACGTGACCCTGTACCGGATCAAGCTGTCGATGAAGAAGGCCACCGTCG
TCAACCGGTTTGTGCGCGGGTTGGGGGTCAAGGCTGCCATCAACCAGTTGCACTTTAACCCCAAG
AAGATGTCCACCGAGTTGGAGCAGTTGTTGAAGCGCGGGTTGGACCAGGCCACCGAGCTTGGCTT
GAACGCCGACGGGATGTACATCCACGCGGTGTGGGTGGGCCTGGACGGCGGCTGGCGCAAGCGTG
TTGACATCAAGGGCCGTGGGCGCATGGGGGTCATCCACCACCCCTACGTGCACTTGAAGGCGGTG
TTGAAGAGCGAGCAGACCAAGATGCGTCGCGAGTGGGAGAAGCAGCAGCAGAAGCAGCAGGCCAA
GCCGCGGATGTTTTTGAACAACGAGCCGTTGAACTTCAAGGTGCGCGGGTTCTACAAGTGGTAGT
CATGTACATAGTCATAGGGATAAACGTTAGAACGAAGAAGGATGG
Right flanking sequence: Indices 347777 -- 348276
GTAGAATGAGTGAGAAAGAGGAAAGAGAAAGACACGAGTACGAAAAAAGAATACAATAATCAAAC
CAGATTCAGTCCAAAGGATTGAAGACCATAGATCCAACCCTCAACACTACCTAAGGAGCGGTCCT
ACATTCAACCTGCCCCCCGGATTCAACCAGTTATTTCACTAATATTTTCAAACCCAATTCATTCA
CACCATCTATACCACCACCACATTACCCCACATTACCCACATTACCACCCATCATCACAAAACAC
CCTCTCCGCATCACACCTACCATCCTAACTAAATTCGCGCATCAGCCAATTTTCATGCTAGCCTA
CCTTGTGCCGCTAGGGTTGTTCGCGATCGTAGTGCGACTCTTTTTAGCAAACCCAGACCCCCCAG
CGATAGCGATGTCTAGTTTACCTGCGATCCGCGTGGCGGCCAAGGCGCCGCTGGCTGCCATCATC
TTCTTGCACGGGCTCGGCGACTCCGGCGACGGGTGGCTGTGGTTC
Found at i:348004 original size:10 final size:10
Alignment explanation
Indices: 347989--348017 Score: 51
Period size: 9 Copynumber: 3.0 Consensus size: 10
347979 TATACCACCA
347989 CCACATTACC
1 CCACATTACC
347999 CCACATTA-C
1 CCACATTACC
348008 CCACATTACC
1 CCACATTACC
348018 ACCCATCATC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
9 9 0.50
10 9 0.50
ACGTcount: A:0.31, C:0.48, G:0.00, T:0.21
Consensus pattern (10 bp):
CCACATTACC
Left flanking sequence: Indices 347489 -- 347988
CAAGCGTGTTGACATCAAGGGCCGTGGGCGCATGGGGGTCATCCACCACCCCTACGTGCACTTGA
AGGCGGTGTTGAAGAGCGAGCAGACCAAGATGCGTCGCGAGTGGGAGAAGCAGCAGCAGAAGCAG
CAGGCCAAGCCGCGGATGTTTTTGAACAACGAGCCGTTGAACTTCAAGGTGCGCGGGTTCTACAA
GTGGTAGTCATGTACATAGTCATAGGGATAAACGTTAGAACGAAGAAGGATGGGGTGGATGGTGG
ATGGTGGATGGTGGTGGTGGATGGTGGAGTAGAATGAGTGAGAAAGAGGAAAGAGAAAGACACGA
GTACGAAAAAAGAATACAATAATCAAACCAGATTCAGTCCAAAGGATTGAAGACCATAGATCCAA
CCCTCAACACTACCTAAGGAGCGGTCCTACATTCAACCTGCCCCCCGGATTCAACCAGTTATTTC
ACTAATATTTTCAAACCCAATTCATTCACACCATCTATACCACCA
Right flanking sequence: Indices 348018 -- 348517
ACCCATCATCACAAAACACCCTCTCCGCATCACACCTACCATCCTAACTAAATTCGCGCATCAGC
CAATTTTCATGCTAGCCTACCTTGTGCCGCTAGGGTTGTTCGCGATCGTAGTGCGACTCTTTTTA
GCAAACCCAGACCCCCCAGCGATAGCGATGTCTAGTTTACCTGCGATCCGCGTGGCGGCCAAGGC
GCCGCTGGCTGCCATCATCTTCTTGCACGGGCTCGGCGACTCCGGCGACGGGTGGCTGTGGTTCC
CCCGGTTGTGCCAGCAGCAGCACATCATCCCCAACCAGGAGGCCATCAACTGGGTGTTCCCGCAC
GCGCCCACCATTCCCATCACGGTGAACGGCGGCATGGCCATGCCCGGGTGGTTCGACATCTACGA
GTTTGGCGGGCGCCCCGACGCCAAGAAGGACGTGGCGGGGTTCTTGGCCTCGGTGGACAAGATCA
AGCAGCTTGTCCAGGAGCAGCGCGACCAGGGCATCAGTGCCGACA
Found at i:349475 original size:95 final size:95
Alignment explanation
Indices: 349312--349513 Score: 305
Period size: 95 Copynumber: 2.1 Consensus size: 95
349302 GCTCTACCTG
* * * *
349312 CCACCAATGCCAAGAGATTCTAGCCAAATGTCGGATTAAGATTCTAACCTAGAGTCGAGACTAAC
1 CCACCAATGCCAAAAGATTCTAGCCAAATGTCGGATTAAGATTCTAACCAAGAGTCAAAACTAAC
*
349377 CAAATGTCACTAAAAAAAGATTCTAACCCA
66 CAAATGTCAATAAAAAAAGATTCTAACCCA
* * *
349407 CCACCAATGCCAAAAGATTGTAGCGAAATGTCGGATTAAGATTCTAACCAAGAGTCAAAATTAAC
1 CCACCAATGCCAAAAGATTCTAGCCAAATGTCGGATTAAGATTCTAACCAAGAGTCAAAACTAAC
* * *
349472 CAAATGTCAATTAGAAAAGATTCTAACCCG
66 CAAATGTCAATAAAAAAAGATTCTAACCCA
349502 CCACCAATGCCA
1 CCACCAATGCCA
349514 GATTCTCGCC
Statistics
Matches: 96, Mismatches: 11, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
95 96 1.00
ACGTcount: A:0.41, C:0.24, G:0.15, T:0.21
Consensus pattern (95 bp):
CCACCAATGCCAAAAGATTCTAGCCAAATGTCGGATTAAGATTCTAACCAAGAGTCAAAACTAAC
CAAATGTCAATAAAAAAAGATTCTAACCCA
Left flanking sequence: Indices 348812 -- 349311
AGCAGGAGTTGGCCGACGTGCAAGAGTTTATCAAAAAGGTGTTGGCTTAGAGAAAAAGAGGTGGT
AGAAGTAATAGATGAATGAAAAGAGGGACAGTGGAGGTGTGGAAGTTGAGTGGAAAGTGAAGGGG
AGAACTTTGTAGATGCACACGTCGACAACCGACGCCCACGTAGTGAAACCAGCGAGCTGGCGTCG
AGAGTGCCTTAGAAGTGTTTGGAGCGGACGTGGTACGGGTGGTGTCTCGTGGGGCGACGACGACG
AGGAAGTCTATAGATTAGTTTCTAAATGAGACACTAGATTGGTTAGGTAGAGATACCGGGACTGG
GGGTAAAGTGGTAAATGGGTAGATGGGTGGAGCTTATTATTGTACATTGTGGGCTATAGAATTAT
GGTCTGCTTGAATCAGTTTGGGGAGATTGAAGCATGAAATAAGGTTACTAGGGTGTGGATCGACT
GTGGTGACCGAGTGTGGTGACTCCTTGCAACTAGCGCTCTACCTG
Right flanking sequence: Indices 349514 -- 350013
GATTCTCGCCAAGAGTCGAGACTAACCAAATATCAATTAGAAAAGATTCTAACCCGCCACCAATG
CCAAAAGATTCTAGCAAAATATCTCAGCCATAACTAACCGACTGAGCCGGCTTTTTAGTTGCTAG
GGTACTTCTAAGTGGTGTACGTTGGGACCATCTTTGCCTGAGGTTAGCTGCCTGCATATAGACAG
ACGGCTTAAACCCATAGAACGAGGGAACCCAAACACTTATGCCGTGAAAGACAACGTATCACACT
TGCTTTTGAGCCTTTTTCACAAAAGTATCTCTTCTGGTACAATCATATGGTAAAGCGGTCGAAGT
TGAAGTATAAGGTATCTATTCGAGTATGTGATTATCTCTAATAGAGTTGGATCTCAACGTTTTCT
GTCAAAGATGCCATTGTGGGGTTTTCTGTCAATTGTGACCCGCGCAAAAATTAGCCACATCAGAT
CCATCCAAAGGTGTACCCCAAGGCTCTTGGATCGGTTTGTAACAA
Found at i:349526 original size:68 final size:68
Alignment explanation
Indices: 349445--349581 Score: 220
Period size: 68 Copynumber: 2.0 Consensus size: 68
349435 TGTCGGATTA
* *
349445 AGATTCTAACCAAGAGTCAAAATTAACCAAATGTCAATTAGAAAAGATTCTAACCCGCCACCAAT
1 AGATTCTAACCAAGAGTCAAAACTAACCAAATATCAATTAGAAAAGATTCTAACCCGCCACCAAT
349510 GCC
66 GCC
** * *
349513 AGATTCTCGCCAAGAGTCGAGACTAACCAAATATCAATTAGAAAAGATTCTAACCCGCCACCAAT
1 AGATTCTAACCAAGAGTCAAAACTAACCAAATATCAATTAGAAAAGATTCTAACCCGCCACCAAT
349578 GCC
66 GCC
349581 A
1 A
349582 AAAGATTCTA
Statistics
Matches: 63, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
68 63 1.00
ACGTcount: A:0.41, C:0.26, G:0.13, T:0.20
Consensus pattern (68 bp):
AGATTCTAACCAAGAGTCAAAACTAACCAAATATCAATTAGAAAAGATTCTAACCCGCCACCAAT
GCC
Left flanking sequence: Indices 348945 -- 349444
ACTTTGTAGATGCACACGTCGACAACCGACGCCCACGTAGTGAAACCAGCGAGCTGGCGTCGAGA
GTGCCTTAGAAGTGTTTGGAGCGGACGTGGTACGGGTGGTGTCTCGTGGGGCGACGACGACGAGG
AAGTCTATAGATTAGTTTCTAAATGAGACACTAGATTGGTTAGGTAGAGATACCGGGACTGGGGG
TAAAGTGGTAAATGGGTAGATGGGTGGAGCTTATTATTGTACATTGTGGGCTATAGAATTATGGT
CTGCTTGAATCAGTTTGGGGAGATTGAAGCATGAAATAAGGTTACTAGGGTGTGGATCGACTGTG
GTGACCGAGTGTGGTGACTCCTTGCAACTAGCGCTCTACCTGCCACCAATGCCAAGAGATTCTAG
CCAAATGTCGGATTAAGATTCTAACCTAGAGTCGAGACTAACCAAATGTCACTAAAAAAAGATTC
TAACCCACCACCAATGCCAAAAGATTGTAGCGAAATGTCGGATTA
Right flanking sequence: Indices 349582 -- 350081
AAAGATTCTAGCAAAATATCTCAGCCATAACTAACCGACTGAGCCGGCTTTTTAGTTGCTAGGGT
ACTTCTAAGTGGTGTACGTTGGGACCATCTTTGCCTGAGGTTAGCTGCCTGCATATAGACAGACG
GCTTAAACCCATAGAACGAGGGAACCCAAACACTTATGCCGTGAAAGACAACGTATCACACTTGC
TTTTGAGCCTTTTTCACAAAAGTATCTCTTCTGGTACAATCATATGGTAAAGCGGTCGAAGTTGA
AGTATAAGGTATCTATTCGAGTATGTGATTATCTCTAATAGAGTTGGATCTCAACGTTTTCTGTC
AAAGATGCCATTGTGGGGTTTTCTGTCAATTGTGACCCGCGCAAAAATTAGCCACATCAGATCCA
TCCAAAGGTGTACCCCAAGGCTCTTGGATCGGTTTGTAACAATCCCACCACTCATTCGCTCGTAC
CTTTTCAACCCCACACAAAACTTCCACACTCTCACCTTCCAAACT
Found at i:353938 original size:13 final size:11
Alignment explanation
Indices: 353906--353941 Score: 54
Period size: 11 Copynumber: 3.1 Consensus size: 11
353896 ATCGATAGCC
353906 GCCGCAACAAA
1 GCCGCAACAAA
353917 GCCGCAACAAA
1 GCCGCAACAAA
353928 GCCAGGCAACAAA
1 GCC--GCAACAAA
353941 G
1 G
353942 GCCTGCTGCG
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
11 14 0.61
13 9 0.39
ACGTcount: A:0.44, C:0.33, G:0.22, T:0.00
Consensus pattern (11 bp):
GCCGCAACAAA
Left flanking sequence: Indices 353406 -- 353905
GCAGCGACGGGAGTTTTTCCGCGTCTCGCCGCGGTCAAAAGTGCGGTGGTTCGCATCGTGGCTGC
CCTGTACGCTGCTGCACACCTTGGCTGCTGACGGCTGCCAGGAGGCGATGACCTGGGTGTGGGAA
TGGCCCACGCGGCACTGGCGGGTGGCGAGATCACCGAGGGGGCTGTGCGGGGCTGTGCCGTGGCG
CTCCTGCGTTCTCAGCCCGTGGCGGGCCCGTGGCGAGCCCTGCTGGCCCCCTCTTCGCCCGCGGG
TGTGAGGCCATCCCGGGCCAAAACGGCCAACGGGCGACATTGGGCGCCGTAGCTCGAGTCGGCTG
TGTCCCCCAGATGGTTTTGACCACCCGCCACCGCTTCGCTGGCGCACAGGCCCCCACCGTGCTCA
TCGCTTCCGCAGCCTCGAGTCATTCCTGATAAAGCCATTGGCAAATTCCTGAGCGATCGCACCGT
TGGACTGTGTGCAGGCGGATCTGTATGCCGGTAATATCGATAGCC
Right flanking sequence: Indices 353942 -- 354441
GCCTGCTGCGGGCGGCGGGCCGACAAAATCGGCAACAATTGCCCTTTTGGAGATGTCTACCCGAC
GTTCCCCACGGTTTCTGACCGCCCCCAGCCCCGTAGCCCGTAGCCCACCGCCGTCGCCTGCGGCT
CCCCGCGGATGCCCGCACACTTTGACGCACGGGCTGCTCCGAACGCACCTCCACACTCTTTCCTC
TCTTTGCACTCTTCACCCACGACCAGGACACCGAGACAGCCAGGACACCGAGACAGCAGCATGAC
GTCGCTCACGGTGCCCAAGGACCAGCTCCCCCCCGTCGCCGAGTTTCTCAACACGCCGTGTCCCC
AGCTCGGGTTCGTCGACTACAACCTCCACTTTGCAACCACCGAAAAGGTTGCCAACAACAACATC
GCCCCCAACCTGAACGCAGAGACGTTGACGGCGTTGATCGGGCTCGGGCTGCGGCCCCGCAGCAT
CATGTGGCCCATGTGTGACCTGAAGAAGGCCACGTTTGTCCCGGA
Found at i:354181 original size:17 final size:17
Alignment explanation
Indices: 354159--354193 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
354149 TCACCCACGA
354159 CCAGGACACCGAGACAG
1 CCAGGACACCGAGACAG
354176 CCAGGACACCGAGACAG
1 CCAGGACACCGAGACAG
354193 C
1 C
354194 AGCATGACGT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.34, C:0.37, G:0.29, T:0.00
Consensus pattern (17 bp):
CCAGGACACCGAGACAG
Left flanking sequence: Indices 353659 -- 354158
CCGCGGGTGTGAGGCCATCCCGGGCCAAAACGGCCAACGGGCGACATTGGGCGCCGTAGCTCGAG
TCGGCTGTGTCCCCCAGATGGTTTTGACCACCCGCCACCGCTTCGCTGGCGCACAGGCCCCCACC
GTGCTCATCGCTTCCGCAGCCTCGAGTCATTCCTGATAAAGCCATTGGCAAATTCCTGAGCGATC
GCACCGTTGGACTGTGTGCAGGCGGATCTGTATGCCGGTAATATCGATAGCCGCCGCAACAAAGC
CGCAACAAAGCCAGGCAACAAAGGCCTGCTGCGGGCGGCGGGCCGACAAAATCGGCAACAATTGC
CCTTTTGGAGATGTCTACCCGACGTTCCCCACGGTTTCTGACCGCCCCCAGCCCCGTAGCCCGTA
GCCCACCGCCGTCGCCTGCGGCTCCCCGCGGATGCCCGCACACTTTGACGCACGGGCTGCTCCGA
ACGCACCTCCACACTCTTTCCTCTCTTTGCACTCTTCACCCACGA
Right flanking sequence: Indices 354194 -- 354693
AGCATGACGTCGCTCACGGTGCCCAAGGACCAGCTCCCCCCCGTCGCCGAGTTTCTCAACACGCC
GTGTCCCCAGCTCGGGTTCGTCGACTACAACCTCCACTTTGCAACCACCGAAAAGGTTGCCAACA
ACAACATCGCCCCCAACCTGAACGCAGAGACGTTGACGGCGTTGATCGGGCTCGGGCTGCGGCCC
CGCAGCATCATGTGGCCCATGTGTGACCTGAAGAAGGCCACGTTTGTCCCGGAGTACTTGCACGT
TGCCGGGGAAACCGCGCACATCCCGTTCCACATCGCCCACTACTTCTCGCAGACGGTCAAGGTGG
ACACGCTGGCGGACAACGCCCAGATCGGCGCCAACATCAACGCGCTCACCAAGGCCCGCACCCAC
GCCCGGGCGTTCTCGCAGCTCATGTTCACGGGCGGGCCGGGAGTGGCCCTCCTGGAGTGTATGTG
GCTCGCACAGCCCGGCGACCAGGCGCTGCTGCCAATGAACGTGGT
Found at i:356405 original size:28 final size:28
Alignment explanation
Indices: 356371--356516 Score: 129
Period size: 28 Copynumber: 5.2 Consensus size: 28
356361 GGGTCGAAAA
356371 GTCGGATTGAGCCTTGGTGTATAGTAAC
1 GTCGGATTGAGCCTTGGTGTATAGTAAC
* * *
356399 GTTGGATTGAGCCTTGGT-TAGT-GCAAA
1 GTCGGATTGAGCCTTGGTGTA-TAGTAAC
* **
356426 ATCGGAACGAGCCTTGGTGTATAGTAAC
1 GTCGGATTGAGCCTTGGTGTATAGTAAC
***
356454 GTCGGATAT-AGCCTTGGTACGTAGTAAC
1 GTCGGAT-TGAGCCTTGGTGTATAGTAAC
* * *
356482 GTCGGA-TGAACCTTAGTGATGTAGTAAC
1 GTCGGATTGAGCCTTGGTG-TATAGTAAC
356510 GTCGGAT
1 GTCGGAT
356517 GAACCTCAAT
Statistics
Matches: 92, Mismatches: 19, Indels: 13
0.74 0.15 0.10
Matches are distributed among these distances:
26 1 0.01
27 27 0.29
28 64 0.70
ACGTcount: A:0.25, C:0.15, G:0.31, T:0.29
Consensus pattern (28 bp):
GTCGGATTGAGCCTTGGTGTATAGTAAC
Left flanking sequence: Indices 355871 -- 356370
CCCACGCCCACCGAGCACCACCTGCCGCGCACCCGGCGGTCGCTGCGCCACCACGGGCACCTGCC
GCTGCCCATCCACAACCGCACCCGGCTGGAGGACGCCACGCCGTTGCTCCACCCGCCGGCGCCCC
AGAACACGATGCTGCTGATTCTCCACAAAAACCTGTACCACGGAGAGGAGCTGCCGCTGCCGGCG
CCGCGGCGCACCTACAACTCGCCCGAGATCATTGCCCTGATCTACCACCTGCTCTACGAGGTGCG
GCTCAAGCGCCACTACGCGGGCCGCGCCCGCAAGCGCACCTGTGTCCATGCCATTGTCGATAACC
AGCGGGTGCCGACGATCGAGGTGTCGCTTGTGGATCTTAATCTTTCGCAGGTGATTCCGGATTGT
AAGATCGACCGGGTGACGCTTACCGACCATCTGATCTGGGTGTTTACCTTGGCGGGGGACATTTT
CCGCTACCGGATTGAGCGTTAGTGTCGAGCAAGTTGGGTCGAAAA
Right flanking sequence: Indices 356517 -- 357016
GAACCTCAATGAGGTAGTCAACGTCAAGTAGCCTTGGTGAGTATTAACGTCGGATCGGGCCTGAA
TGATAGTGCAAATGTTATCGAGCCTTGGTTTGTAGTAACGTCATCGAGCTTAATGATGTAGTACC
GTCGAATCATTCTTGGTACGTAGTATCATCGGAACAAGCCTTGGTGTGTAGTAATATCTTCAGGT
CTTGGTGATGTGTAACGTTGGTGAGCCTTATGATGTAGTAACATCGAATAGAGCCTTGTTATAGT
GCAAATGTCATCGAGCCTTGGTTTGTGGTAACGCCATCGAGCCTTAGCATGTAGTAACTTCACCG
AGCCTTATTGATGTTTTAACGTCGAATCCCTTCGTACGTAGTACCTTCGAGTCCTCGTTATAGTG
CATCATCACCCTACTCACGCCGCCCTAGAACGTCATCTCTATTAGTCTCTATGAACGCTAGTGGA
ACCCCTGGCCATCCATGCCAAACCCCAACTCCTCCTCAAGCCGAA
Found at i:356517 original size:28 final size:28
Alignment explanation
Indices: 356447--356541 Score: 104
Period size: 28 Copynumber: 3.4 Consensus size: 28
356437 CCTTGGTGTA
*
356447 TAGTAACGTCGGAT-ATAGCCTTGGT-ACG
1 TAGTAACGTCGGATGA-A-CCTTAGTGACG
*
356475 TAGTAACGTCGGATGAACCTTAGTGATG
1 TAGTAACGTCGGATGAACCTTAGTGACG
* * *
356503 TAGTAACGTCGGATGAACCTCAATGAGG
1 TAGTAACGTCGGATGAACCTTAGTGACG
356531 TAGTCAACGTC
1 TAGT-AACGTC
356542 AAGTAGCCTT
Statistics
Matches: 59, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 6 0.10
28 46 0.78
29 7 0.12
ACGTcount: A:0.28, C:0.18, G:0.27, T:0.26
Consensus pattern (28 bp):
TAGTAACGTCGGATGAACCTTAGTGACG
Left flanking sequence: Indices 355947 -- 356446
ACAACCGCACCCGGCTGGAGGACGCCACGCCGTTGCTCCACCCGCCGGCGCCCCAGAACACGATG
CTGCTGATTCTCCACAAAAACCTGTACCACGGAGAGGAGCTGCCGCTGCCGGCGCCGCGGCGCAC
CTACAACTCGCCCGAGATCATTGCCCTGATCTACCACCTGCTCTACGAGGTGCGGCTCAAGCGCC
ACTACGCGGGCCGCGCCCGCAAGCGCACCTGTGTCCATGCCATTGTCGATAACCAGCGGGTGCCG
ACGATCGAGGTGTCGCTTGTGGATCTTAATCTTTCGCAGGTGATTCCGGATTGTAAGATCGACCG
GGTGACGCTTACCGACCATCTGATCTGGGTGTTTACCTTGGCGGGGGACATTTTCCGCTACCGGA
TTGAGCGTTAGTGTCGAGCAAGTTGGGTCGAAAAGTCGGATTGAGCCTTGGTGTATAGTAACGTT
GGATTGAGCCTTGGTTAGTGCAAAATCGGAACGAGCCTTGGTGTA
Right flanking sequence: Indices 356542 -- 357041
AAGTAGCCTTGGTGAGTATTAACGTCGGATCGGGCCTGAATGATAGTGCAAATGTTATCGAGCCT
TGGTTTGTAGTAACGTCATCGAGCTTAATGATGTAGTACCGTCGAATCATTCTTGGTACGTAGTA
TCATCGGAACAAGCCTTGGTGTGTAGTAATATCTTCAGGTCTTGGTGATGTGTAACGTTGGTGAG
CCTTATGATGTAGTAACATCGAATAGAGCCTTGTTATAGTGCAAATGTCATCGAGCCTTGGTTTG
TGGTAACGCCATCGAGCCTTAGCATGTAGTAACTTCACCGAGCCTTATTGATGTTTTAACGTCGA
ATCCCTTCGTACGTAGTACCTTCGAGTCCTCGTTATAGTGCATCATCACCCTACTCACGCCGCCC
TAGAACGTCATCTCTATTAGTCTCTATGAACGCTAGTGGAACCCCTGGCCATCCATGCCAAACCC
CAACTCCTCCTCAAGCCGAAACAAGTCCAGCGTCAGCTGGCCGCC
Found at i:356833 original size:26 final size:26
Alignment explanation
Indices: 356785--356848 Score: 65
Period size: 26 Copynumber: 2.5 Consensus size: 26
356775 GTGCAAATGT
* ** *
356785 CATCGAGCCTTGGTTTGTGGTAACGC
1 CATCGAGCCTTAGCATGTAGTAACGC
**
356811 CATCGAGCCTTAGCATGTAGTAACTT
1 CATCGAGCCTTAGCATGTAGTAACGC
*
356837 CACCGAGCCTTA
1 CATCGAGCCTTA
356849 TTGATGTTTT
Statistics
Matches: 31, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
26 31 1.00
ACGTcount: A:0.22, C:0.27, G:0.23, T:0.28
Consensus pattern (26 bp):
CATCGAGCCTTAGCATGTAGTAACGC
Left flanking sequence: Indices 356285 -- 356784
GACCATCTGATCTGGGTGTTTACCTTGGCGGGGGACATTTTCCGCTACCGGATTGAGCGTTAGTG
TCGAGCAAGTTGGGTCGAAAAGTCGGATTGAGCCTTGGTGTATAGTAACGTTGGATTGAGCCTTG
GTTAGTGCAAAATCGGAACGAGCCTTGGTGTATAGTAACGTCGGATATAGCCTTGGTACGTAGTA
ACGTCGGATGAACCTTAGTGATGTAGTAACGTCGGATGAACCTCAATGAGGTAGTCAACGTCAAG
TAGCCTTGGTGAGTATTAACGTCGGATCGGGCCTGAATGATAGTGCAAATGTTATCGAGCCTTGG
TTTGTAGTAACGTCATCGAGCTTAATGATGTAGTACCGTCGAATCATTCTTGGTACGTAGTATCA
TCGGAACAAGCCTTGGTGTGTAGTAATATCTTCAGGTCTTGGTGATGTGTAACGTTGGTGAGCCT
TATGATGTAGTAACATCGAATAGAGCCTTGTTATAGTGCAAATGT
Right flanking sequence: Indices 356849 -- 357348
TTGATGTTTTAACGTCGAATCCCTTCGTACGTAGTACCTTCGAGTCCTCGTTATAGTGCATCATC
ACCCTACTCACGCCGCCCTAGAACGTCATCTCTATTAGTCTCTATGAACGCTAGTGGAACCCCTG
GCCATCCATGCCAAACCCCAACTCCTCCTCAAGCCGAAACAAGTCCAGCGTCAGCTGGCCGCCAA
ACGTAAACTCCTCGAGCTCCTGCGGCCGCGGCGCCGGGTCGTAGCCGTTGGGAGGGTACACGGGA
GCGGTGTCCACGTGCTCGTGCGGGGTGTTGTACTGCGGCGGCGGCGGCACCAGGTACGCGCCCTG
GTCGTACTGGAACTGCATCTGCTGCGCGTACTGCTGCTGGTGGTAGTGGTGGGCCTGTTCCTGCG
ACATCTGGAGCTTGAGCTGCTCGCGCTGCTGCTCCTCGATCGGCTTGCGGGCAAACTCGCGGAAG
TTTTTCACCTCGTCGATGATGATGCGCTTCATCTCGTCCATGTCG
Found at i:358605 original size:27 final size:27
Alignment explanation
Indices: 358575--358645 Score: 92
Period size: 27 Copynumber: 2.6 Consensus size: 27
358565 TTTGTGTGCT
*
358575 GGGT-GGGAGTGTAGGGGAGGGTGGAG
1 GGGTAGGGAGTGTAGGGGAGGGTAGAG
*
358601 AGGGTAGAGAGTGTA-GGGAGGGTAGAG
1 -GGGTAGGGAGTGTAGGGGAGGGTAGAG
358628 GGTGTAGGGAGTGTAGGG
1 GG-GTAGGGAGTGTAGGG
358646 TCGGGAGTAG
Statistics
Matches: 38, Mismatches: 3, Indels: 5
0.83 0.07 0.11
Matches are distributed among these distances:
26 2 0.05
27 26 0.68
28 10 0.26
ACGTcount: A:0.21, C:0.00, G:0.62, T:0.17
Consensus pattern (27 bp):
GGGTAGGGAGTGTAGGGGAGGGTAGAG
Left flanking sequence: Indices 358075 -- 358574
AAGTTGCCGGTGACGGGGTCGGGGATGATGTCGAGGTCGTAGAGACAGGTGATGTTTTTGTGCCC
GCGGAAAAACTGCAACAACTTGAGCTCGCGGAGCAGTCGCTTGCAGAGGATCTTTTTCAGGAAGA
TGTTGGTGATTTTCTTGATGGCCACGTACAGATCCTCGGCCCCGTTGCGGTACTGGGCCTTGCAC
ACGATGCCGTAGGCTCCGTGGCCCAATTCTTTGGTGATGGTGAAGTGGTTGTCAACAATAAAGTC
CTGGCCGTACACCTGGTGCACCAGGCGGCCGGGATACGCGGTGGCCTTCATGGGTCGAGTGCCGT
GCGGTGGTGATAGCGTGGTAAGGGGGGTGCAGACGAATTAATCCCCGGAGTGCGACTGATGCGTT
ATATAGCAGTTGCGCCCGAACAAACGTTTACGTGAAAAAGGTTGACCCGACGCCGTGAGCAAGCG
AGATCGATGCCATGCCTTGCGGAACGCCGCGGGGTTTTGTGTGCT
Right flanking sequence: Indices 358646 -- 359145
TCGGGAGTAGAGTCGAGAGTGTAGGTTTACCGGGCCCGCGCGTGCTGGTTGTTTTACTCGGTTAT
GGCATCGAGGCACCAGCGGCTCCGTTCCCGAGGCCACATGCATATCCGTAGCCGTTCCTATCGCA
TCGGTGGTGGCGATAGGCGAAGATAAACCGTATCGGGGGCACAAACCTGTGGGCCGCGCACGGTA
TTGTGCGGCGGTTGCTCCCACCCGCTGACCGCACCTCGCAATCGCTGGGGTTCCTTCGCGGTGGA
GGTGAAAAATCTATTTATAGAACGTAGGTGGGAAAACACGTCAAGCATATGTACGATGACACCAT
CGAGCGTGGGTCCGCGAACGGAGATAAAGGGGTTGGACACCAGCAGCCCGGGTATCCCCCGGTTA
CCAGCGGCGTGGCAAAGAGGGGTAACGCGGGTTGCGGTTGCGGGCTGGGGGCGCCGTCGCTTAGT
GCGGTATACGAGGCCAGCCGCGGCGTGCCCAGTGGGCGTTTCCGA
Found at i:358623 original size:18 final size:18
Alignment explanation
Indices: 358600--358643 Score: 70
Period size: 18 Copynumber: 2.4 Consensus size: 18
358590 GGAGGGTGGA
358600 GAGGGTAGAGAGTGTAGG
1 GAGGGTAGAGAGTGTAGG
*
358618 GAGGGTAGAGGGTGTAGG
1 GAGGGTAGAGAGTGTAGG
*
358636 GAGTGTAG
1 GAGGGTAG
358644 GGTCGGGAGT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.25, C:0.00, G:0.57, T:0.18
Consensus pattern (18 bp):
GAGGGTAGAGAGTGTAGG
Left flanking sequence: Indices 358100 -- 358599
TGATGTCGAGGTCGTAGAGACAGGTGATGTTTTTGTGCCCGCGGAAAAACTGCAACAACTTGAGC
TCGCGGAGCAGTCGCTTGCAGAGGATCTTTTTCAGGAAGATGTTGGTGATTTTCTTGATGGCCAC
GTACAGATCCTCGGCCCCGTTGCGGTACTGGGCCTTGCACACGATGCCGTAGGCTCCGTGGCCCA
ATTCTTTGGTGATGGTGAAGTGGTTGTCAACAATAAAGTCCTGGCCGTACACCTGGTGCACCAGG
CGGCCGGGATACGCGGTGGCCTTCATGGGTCGAGTGCCGTGCGGTGGTGATAGCGTGGTAAGGGG
GGTGCAGACGAATTAATCCCCGGAGTGCGACTGATGCGTTATATAGCAGTTGCGCCCGAACAAAC
GTTTACGTGAAAAAGGTTGACCCGACGCCGTGAGCAAGCGAGATCGATGCCATGCCTTGCGGAAC
GCCGCGGGGTTTTGTGTGCTGGGTGGGAGTGTAGGGGAGGGTGGA
Right flanking sequence: Indices 358644 -- 359143
GGTCGGGAGTAGAGTCGAGAGTGTAGGTTTACCGGGCCCGCGCGTGCTGGTTGTTTTACTCGGTT
ATGGCATCGAGGCACCAGCGGCTCCGTTCCCGAGGCCACATGCATATCCGTAGCCGTTCCTATCG
CATCGGTGGTGGCGATAGGCGAAGATAAACCGTATCGGGGGCACAAACCTGTGGGCCGCGCACGG
TATTGTGCGGCGGTTGCTCCCACCCGCTGACCGCACCTCGCAATCGCTGGGGTTCCTTCGCGGTG
GAGGTGAAAAATCTATTTATAGAACGTAGGTGGGAAAACACGTCAAGCATATGTACGATGACACC
ATCGAGCGTGGGTCCGCGAACGGAGATAAAGGGGTTGGACACCAGCAGCCCGGGTATCCCCCGGT
TACCAGCGGCGTGGCAAAGAGGGGTAACGCGGGTTGCGGTTGCGGGCTGGGGGCGCCGTCGCTTA
GTGCGGTATACGAGGCCAGCCGCGGCGTGCCCAGTGGGCGTTTCC
Found at i:358644 original size:9 final size:9
Alignment explanation
Indices: 358579--358645 Score: 57
Period size: 9 Copynumber: 7.3 Consensus size: 9
358569 TGTGCTGGGT
358579 GGGAGTGTA
1 GGGAGTGTA
*
358588 GGGGAGGGT-
1 -GGGAGTGTA
*
358597 GGAGAGGGTA
1 GG-GAGTGTA
*
358607 GAGAGTGTA
1 GGGAGTGTA
*
358616 GGGAGGGTA
1 GGGAGTGTA
358625 GAGG-GTGTA
1 G-GGAGTGTA
358634 GGGAGTGTA
1 GGGAGTGTA
358643 GGG
1 GGG
358646 TCGGGAGTAG
Statistics
Matches: 47, Mismatches: 6, Indels: 9
0.76 0.10 0.15
Matches are distributed among these distances:
8 4 0.09
9 33 0.70
10 10 0.21
ACGTcount: A:0.22, C:0.00, G:0.61, T:0.16
Consensus pattern (9 bp):
GGGAGTGTA
Left flanking sequence: Indices 358079 -- 358578
TGCCGGTGACGGGGTCGGGGATGATGTCGAGGTCGTAGAGACAGGTGATGTTTTTGTGCCCGCGG
AAAAACTGCAACAACTTGAGCTCGCGGAGCAGTCGCTTGCAGAGGATCTTTTTCAGGAAGATGTT
GGTGATTTTCTTGATGGCCACGTACAGATCCTCGGCCCCGTTGCGGTACTGGGCCTTGCACACGA
TGCCGTAGGCTCCGTGGCCCAATTCTTTGGTGATGGTGAAGTGGTTGTCAACAATAAAGTCCTGG
CCGTACACCTGGTGCACCAGGCGGCCGGGATACGCGGTGGCCTTCATGGGTCGAGTGCCGTGCGG
TGGTGATAGCGTGGTAAGGGGGGTGCAGACGAATTAATCCCCGGAGTGCGACTGATGCGTTATAT
AGCAGTTGCGCCCGAACAAACGTTTACGTGAAAAAGGTTGACCCGACGCCGTGAGCAAGCGAGAT
CGATGCCATGCCTTGCGGAACGCCGCGGGGTTTTGTGTGCTGGGT
Right flanking sequence: Indices 358646 -- 359145
TCGGGAGTAGAGTCGAGAGTGTAGGTTTACCGGGCCCGCGCGTGCTGGTTGTTTTACTCGGTTAT
GGCATCGAGGCACCAGCGGCTCCGTTCCCGAGGCCACATGCATATCCGTAGCCGTTCCTATCGCA
TCGGTGGTGGCGATAGGCGAAGATAAACCGTATCGGGGGCACAAACCTGTGGGCCGCGCACGGTA
TTGTGCGGCGGTTGCTCCCACCCGCTGACCGCACCTCGCAATCGCTGGGGTTCCTTCGCGGTGGA
GGTGAAAAATCTATTTATAGAACGTAGGTGGGAAAACACGTCAAGCATATGTACGATGACACCAT
CGAGCGTGGGTCCGCGAACGGAGATAAAGGGGTTGGACACCAGCAGCCCGGGTATCCCCCGGTTA
CCAGCGGCGTGGCAAAGAGGGGTAACGCGGGTTGCGGTTGCGGGCTGGGGGCGCCGTCGCTTAGT
GCGGTATACGAGGCCAGCCGCGGCGTGCCCAGTGGGCGTTTCCGA
Found at i:361712 original size:6 final size:6
Alignment explanation
Indices: 361700--361733 Score: 59
Period size: 6 Copynumber: 5.7 Consensus size: 6
361690 ACCGCCGGCA
*
361700 CCGGAG CCCGAG CCGGAG CCGGAG CCGGAG CCGG
1 CCGGAG CCGGAG CCGGAG CCGGAG CCGGAG CCGG
361734 TCGCCAACGC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.15, C:0.38, G:0.47, T:0.00
Consensus pattern (6 bp):
CCGGAG
Left flanking sequence: Indices 361200 -- 361699
TGCCGCTGCAGATCATCTCCAACGAGCACATCGTCCAGCTCAACGACGAGCTGCCGGTGGTGGAC
GGGTGCATCAACCGCTACTTTGTCATCAAGCAGTTGCAGTTCAAGAACGCGACACCCAACAACGG
CAACCTCACCTTCCAGAACTACTACCACTTGGTGGTGAAGTTGCTGGCGGTGGTGGCGGACTTGT
ACTACGACGACTACATGGAGGAGGACGGCGTGCTGCACACCCAGGGCGCCGCCGACGCCAACACC
AACGAGATCACCCTCTGCGAGCTCCGGCTGGAACCGGTGATTGTGCGGGGCCGCAACCCCAACTT
CTACGCCGACCGCAAGGACGTGTTGATCAAGGGCCGTCTGCTGCTTCTGAAGCGCAGCTACCGCA
TGGCCACCGCGGGCGAGGCCGCCGACGACGACGACACCACCGAGGCGACGGACCCGCTCCACCTC
GGGCCCGAGCTCGCACTCGAAACCCAGCTCGAGCCACCGCCGGCA
Right flanking sequence: Indices 361734 -- 362233
TCGCCAACGCGGTGGCAGCACACCTGCTGGCAGCACACGACCCGCCGCTGGACCCGCTGGTGGCC
ACGGCGCTGCCGCTCGCCCAGATCAACCACGACACCCCGGACTTGCGCGGGTTGTCGCGGTACAA
CTACTTCCCCATCCTGAACGTGTACTACCTCCCTCCGATCAACGTGGTGTACATCCCGCACACCC
ACCGGCTGAAGGAGGAGCTGGTGCCGCCCGACCTGAAGTCGGCGCCCAAGAACCCGGCCCAGCCC
CGCGAGCGGCGCAAGTCGCTGAACGTCTACTTTAGCTGATTGTATTATATCTATTGACCATGTAG
CTAATCGTCAGCCTATTGACCATGTAGCTAATTTTGTCATCCTATTGACCGTAGCTAATCGCGTC
CTATTGACCGTGTAGCTAATCGTCATCCTATTGACCGTGTAGCTAATCCTCGTCGTCCTCGTACT
TTTCCAACCGGGTCTCGGCCACGTCGTCCGCCAACTTGTAGCCAC
Found at i:362075 original size:27 final size:27
Alignment explanation
Indices: 362044--362171 Score: 156
Period size: 27 Copynumber: 4.8 Consensus size: 27
362034 TGTATTATAT
362044 CTATTGACCATGTAGCTAATCGTCAGC
1 CTATTGACCATGTAGCTAATCGTCAGC
* *
362071 CTATTGACCATGTAGCTAATTTTGTCATC
1 CTATTGACCATGTAGCTAA--TCGTCAGC
362100 CTATTGACC--GTAGCTAATCG-C-GTC
1 CTATTGACCATGTAGCTAATCGTCAG-C
* *
362124 CTATTGACCGTGTAGCTAATCGTCATC
1 CTATTGACCATGTAGCTAATCGTCAGC
*
362151 CTATTGACCGTGTAGCTAATC
1 CTATTGACCATGTAGCTAATC
362172 CTCGTCGTCC
Statistics
Matches: 89, Mismatches: 5, Indels: 14
0.82 0.05 0.13
Matches are distributed among these distances:
24 11 0.12
25 2 0.02
26 11 0.12
27 50 0.56
29 15 0.17
ACGTcount: A:0.23, C:0.25, G:0.18, T:0.34
Consensus pattern (27 bp):
CTATTGACCATGTAGCTAATCGTCAGC
Left flanking sequence: Indices 361544 -- 362043
GTGTTGATCAAGGGCCGTCTGCTGCTTCTGAAGCGCAGCTACCGCATGGCCACCGCGGGCGAGGC
CGCCGACGACGACGACACCACCGAGGCGACGGACCCGCTCCACCTCGGGCCCGAGCTCGCACTCG
AAACCCAGCTCGAGCCACCGCCGGCACCGGAGCCCGAGCCGGAGCCGGAGCCGGAGCCGGTCGCC
AACGCGGTGGCAGCACACCTGCTGGCAGCACACGACCCGCCGCTGGACCCGCTGGTGGCCACGGC
GCTGCCGCTCGCCCAGATCAACCACGACACCCCGGACTTGCGCGGGTTGTCGCGGTACAACTACT
TCCCCATCCTGAACGTGTACTACCTCCCTCCGATCAACGTGGTGTACATCCCGCACACCCACCGG
CTGAAGGAGGAGCTGGTGCCGCCCGACCTGAAGTCGGCGCCCAAGAACCCGGCCCAGCCCCGCGA
GCGGCGCAAGTCGCTGAACGTCTACTTTAGCTGATTGTATTATAT
Right flanking sequence: Indices 362172 -- 362671
CTCGTCGTCCTCGTACTTTTCCAACCGGGTCTCGGCCACGTCGTCCGCCAACTTGTAGCCACCAG
AGATGGCAAATTGCCCGCCGCCCTCGATGTGCACGATGTCGTGGTCCTTGGTGGCGGTGTTGTGG
ATGCGGGTGGGCACCTCCACGTCGTCGTCCACAGGCCCGAGCCCCAACGCGTAGGTGTCGCCAAA
GCCCCACGCGTACACCATCCCGTCGTCGGTGATGGCATACAGCTGGTGCAGCCCGGCGCCCACCG
CGCGGGCCTTGAACCCGGCCTTGCCAATCTTGACCGGGGTGGGCTGGGGAATCGACCGCGGCTTG
CCGTTGGCGTCCTTGAACGTGTACGCGGGGTAGTCCGCCTCGGGAATCCCCAACTCCGCCATGTC
CAACCGCCCGCACGCGAGCACCTGGCCGTCGCCGGTCACCGCGAGCGTGTGGTGCTCGCCACCGG
CAATCTGGGTCACCTTCTTGCCCAGCAACCCCTCGACGAGCCGCG
Found at i:362138 original size:53 final size:53
Alignment explanation
Indices: 362044--362171 Score: 172
Period size: 53 Copynumber: 2.4 Consensus size: 53
362034 TGTATTATAT
*
362044 CTATTGACCATGTAGCTAATCGTCAGCCTATTGACCATGTAGCTAATTTTGTCATC
1 CTATTGACC-TGTAGCTAATCGTCAGCCTATTGACCATGTAGCTAA--TCGTCATC
*
362100 CTATTGACC-GTAGCTAATCG-C-GTCCTATTGACCGTGTAGCTAATCGTCATC
1 CTATTGACCTGTAGCTAATCGTCAG-CCTATTGACCATGTAGCTAATCGTCATC
362151 CTATTGACCGTGTAGCTAATC
1 CTATTGACC-TGTAGCTAATC
362172 CTCGTCGTCC
Statistics
Matches: 67, Mismatches: 2, Indels: 9
0.86 0.03 0.12
Matches are distributed among these distances:
51 16 0.24
52 1 0.01
53 30 0.45
54 11 0.16
56 9 0.13
ACGTcount: A:0.23, C:0.25, G:0.18, T:0.34
Consensus pattern (53 bp):
CTATTGACCTGTAGCTAATCGTCAGCCTATTGACCATGTAGCTAATCGTCATC
Left flanking sequence: Indices 361544 -- 362043
GTGTTGATCAAGGGCCGTCTGCTGCTTCTGAAGCGCAGCTACCGCATGGCCACCGCGGGCGAGGC
CGCCGACGACGACGACACCACCGAGGCGACGGACCCGCTCCACCTCGGGCCCGAGCTCGCACTCG
AAACCCAGCTCGAGCCACCGCCGGCACCGGAGCCCGAGCCGGAGCCGGAGCCGGAGCCGGTCGCC
AACGCGGTGGCAGCACACCTGCTGGCAGCACACGACCCGCCGCTGGACCCGCTGGTGGCCACGGC
GCTGCCGCTCGCCCAGATCAACCACGACACCCCGGACTTGCGCGGGTTGTCGCGGTACAACTACT
TCCCCATCCTGAACGTGTACTACCTCCCTCCGATCAACGTGGTGTACATCCCGCACACCCACCGG
CTGAAGGAGGAGCTGGTGCCGCCCGACCTGAAGTCGGCGCCCAAGAACCCGGCCCAGCCCCGCGA
GCGGCGCAAGTCGCTGAACGTCTACTTTAGCTGATTGTATTATAT
Right flanking sequence: Indices 362172 -- 362671
CTCGTCGTCCTCGTACTTTTCCAACCGGGTCTCGGCCACGTCGTCCGCCAACTTGTAGCCACCAG
AGATGGCAAATTGCCCGCCGCCCTCGATGTGCACGATGTCGTGGTCCTTGGTGGCGGTGTTGTGG
ATGCGGGTGGGCACCTCCACGTCGTCGTCCACAGGCCCGAGCCCCAACGCGTAGGTGTCGCCAAA
GCCCCACGCGTACACCATCCCGTCGTCGGTGATGGCATACAGCTGGTGCAGCCCGGCGCCCACCG
CGCGGGCCTTGAACCCGGCCTTGCCAATCTTGACCGGGGTGGGCTGGGGAATCGACCGCGGCTTG
CCGTTGGCGTCCTTGAACGTGTACGCGGGGTAGTCCGCCTCGGGAATCCCCAACTCCGCCATGTC
CAACCGCCCGCACGCGAGCACCTGGCCGTCGCCGGTCACCGCGAGCGTGTGGTGCTCGCCACCGG
CAATCTGGGTCACCTTCTTGCCCAGCAACCCCTCGACGAGCCGCG
Found at i:363677 original size:5 final size:5
Alignment explanation
Indices: 363667--363694 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
363657 TGCGAGCAAT
363667 GAGAA GAGAA GAGAA GAGAA GAGAA GAG
1 GAGAA GAGAA GAGAA GAGAA GAGAA GAG
363695 CTAGAAAGGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.57, C:0.00, G:0.43, T:0.00
Consensus pattern (5 bp):
GAGAA
Left flanking sequence: Indices 363167 -- 363666
GCTCGGCAGGGTTCAAGTCGCCGTCCTCGTCGTCGGACAGGTCGTCCACGTCCATGTCCTTGAGC
ACGTCCTGGCCCAGGGTGTCGCGCCCGAGCACCCCGTAGTCGTTGGAGCCCCACAGCCACACGTT
GTTCTCCAGGTCCAACACCAACGTGTGCATCCCGCCCGCGGCAAAGTCCACCGCGGCAATGTCCT
TGCCGTTGGCCTGTCCGAGGGCCGGTGGCAGCACAAACGGGTTCTTTCGCGGGCGCTTGACCTCC
TTGGTCTTGGCCTCGGGCCCAAGGCCCAACTCGCACATCGCACCGGTGCCCCAGACAAACACATC
GAGCGGGGTGGTTTTGGGCTTGGGGATGTCGTTGACGTCGGGCAAGCGGCCGTACAGGTGGAGGA
GCGCCAGAGCCAGCGGCACCACCACCTTCAGCCGCTTGCGGGGCGCCGGCAGCGCCAGTCTCAGC
AGGTTTCTCTTGGGAGGCATGTTGTTTAGTTTTCGTGCGAGCAAT
Right flanking sequence: Indices 363695 -- 364194
CTAGAAAGGAGGGAGTAAGGAGAATGGTTAGTTGATGAGGGTGAAATATGGTTGTTGTGTGGTTG
ATGTGTGGTTGATGTGTGGTTGTGTGGTTGTGTGTTTGTGTGGTTGTGCTGTGGTTATGCTGTGC
TGTGTTGTTATGTTGTGTGGTTGTGTTGTGTGGGTAGACATGTAGGTATGTTGTATTGTTGTGGT
TATGCCAGGCTTAAAATTGTAGAAGCACAGTCAAGGTGGCACGATTACGAATGAAGCCATGCCAG
CCAGACAACGCCATCCGCAGATGTAACCGGCTCGGAATGTCGTTCGGCTGGCTCTGACGCGAGAT
CAGTCATTGGGGGAGAATCTTACGATCTTTTGCCACAAAACGGAATATTTTGCAAAATCGGAAAA
TCTGGAATATCTGGATTATCTGCTGGCCACACCCACGTCTGACACCGGTCACAGCTAGTCTATTT
CACTTTGACAGCTGAACCGGCGGTGCTTCTCTGCGCCATGCAGGA
Found at i:363759 original size:11 final size:10
Alignment explanation
Indices: 363743--363850 Score: 70
Period size: 11 Copynumber: 10.9 Consensus size: 10
363733 GGGTGAAATA
363743 TGGTTGTTGTG
1 TGGTTG-TGTG
363754 TGGTTGATGTG
1 TGGTTG-TGTG
363765 TGGTTGATGTG
1 TGGTTG-TGTG
363776 TGG-T-TGTG
1 TGGTTGTGTG
363784 TGG-T-TGTG
1 TGGTTGTGTG
363792 T-GTT-TGTG
1 TGGTTGTGTG
363800 TGGTTGTGCTG
1 TGGTTGTG-TG
*
363811 TGGTTATGCTG
1 TGGTTGTG-TG
*
363822 T-GCTGTGT-
1 TGGTTGTGTG
*
363830 TGTTATGTTGTG
1 TGGT-TG-TGTG
363842 TGGTTGTGT
1 TGGTTGTGT
363851 TGTGTGGGTA
Statistics
Matches: 82, Mismatches: 7, Indels: 17
0.77 0.07 0.16
Matches are distributed among these distances:
7 1 0.01
8 20 0.24
9 4 0.05
10 12 0.15
11 42 0.51
12 3 0.04
ACGTcount: A:0.04, C:0.03, G:0.43, T:0.51
Consensus pattern (10 bp):
TGGTTGTGTG
Left flanking sequence: Indices 363243 -- 363742
CAGGGTGTCGCGCCCGAGCACCCCGTAGTCGTTGGAGCCCCACAGCCACACGTTGTTCTCCAGGT
CCAACACCAACGTGTGCATCCCGCCCGCGGCAAAGTCCACCGCGGCAATGTCCTTGCCGTTGGCC
TGTCCGAGGGCCGGTGGCAGCACAAACGGGTTCTTTCGCGGGCGCTTGACCTCCTTGGTCTTGGC
CTCGGGCCCAAGGCCCAACTCGCACATCGCACCGGTGCCCCAGACAAACACATCGAGCGGGGTGG
TTTTGGGCTTGGGGATGTCGTTGACGTCGGGCAAGCGGCCGTACAGGTGGAGGAGCGCCAGAGCC
AGCGGCACCACCACCTTCAGCCGCTTGCGGGGCGCCGGCAGCGCCAGTCTCAGCAGGTTTCTCTT
GGGAGGCATGTTGTTTAGTTTTCGTGCGAGCAATGAGAAGAGAAGAGAAGAGAAGAGAAGAGCTA
GAAAGGAGGGAGTAAGGAGAATGGTTAGTTGATGAGGGTGAAATA
Right flanking sequence: Indices 363851 -- 364350
TGTGTGGGTAGACATGTAGGTATGTTGTATTGTTGTGGTTATGCCAGGCTTAAAATTGTAGAAGC
ACAGTCAAGGTGGCACGATTACGAATGAAGCCATGCCAGCCAGACAACGCCATCCGCAGATGTAA
CCGGCTCGGAATGTCGTTCGGCTGGCTCTGACGCGAGATCAGTCATTGGGGGAGAATCTTACGAT
CTTTTGCCACAAAACGGAATATTTTGCAAAATCGGAAAATCTGGAATATCTGGATTATCTGCTGG
CCACACCCACGTCTGACACCGGTCACAGCTAGTCTATTTCACTTTGACAGCTGAACCGGCGGTGC
TTCTCTGCGCCATGCAGGACGCAACGGGCCGTATGGAAGCAACCGCCCACGGCTCGGGGTAGCAC
CTGCTGACGGCTGAATAATCAACACATCGGTGATTCACACCGGTGACTCACCCCAGTGCCGCCCC
GTCCCGCTGGCCCGGACCCCGTGGCTCGCCGCTGGCCCGGATGAC
Found at i:363770 original size:22 final size:21
Alignment explanation
Indices: 363743--363850 Score: 87
Period size: 22 Copynumber: 5.0 Consensus size: 21
363733 GGGTGAAATA
363743 TGGTTGTTGTGTGGTTGATGTG
1 TGGTTGTTGTGTGGTTG-TGTG
*
363765 TGGTTGATGTGTGGTTGTGTGG
1 TGGTTGTTGTGTGGTTGTGT-G
*
363787 TTGTGTGTTTGTGTGGTTGTGCTG
1 TGGT-TG-TTGTGTGGTTGTG-TG
* *
363811 TGGTT-ATGCTGT-GCTGTGT-
1 TGGTTGTTG-TGTGGTTGTGTG
*
363830 TGTTATGTTGTGTGGTTGTGT
1 TGGT-TGTTGTGTGGTTGTGT
363851 TGTGTGGGTA
Statistics
Matches: 69, Mismatches: 9, Indels: 17
0.73 0.09 0.18
Matches are distributed among these distances:
19 3 0.04
20 5 0.07
21 18 0.26
22 23 0.33
23 3 0.04
24 16 0.23
25 1 0.01
ACGTcount: A:0.04, C:0.03, G:0.43, T:0.51
Consensus pattern (21 bp):
TGGTTGTTGTGTGGTTGTGTG
Left flanking sequence: Indices 363243 -- 363742
CAGGGTGTCGCGCCCGAGCACCCCGTAGTCGTTGGAGCCCCACAGCCACACGTTGTTCTCCAGGT
CCAACACCAACGTGTGCATCCCGCCCGCGGCAAAGTCCACCGCGGCAATGTCCTTGCCGTTGGCC
TGTCCGAGGGCCGGTGGCAGCACAAACGGGTTCTTTCGCGGGCGCTTGACCTCCTTGGTCTTGGC
CTCGGGCCCAAGGCCCAACTCGCACATCGCACCGGTGCCCCAGACAAACACATCGAGCGGGGTGG
TTTTGGGCTTGGGGATGTCGTTGACGTCGGGCAAGCGGCCGTACAGGTGGAGGAGCGCCAGAGCC
AGCGGCACCACCACCTTCAGCCGCTTGCGGGGCGCCGGCAGCGCCAGTCTCAGCAGGTTTCTCTT
GGGAGGCATGTTGTTTAGTTTTCGTGCGAGCAATGAGAAGAGAAGAGAAGAGAAGAGAAGAGCTA
GAAAGGAGGGAGTAAGGAGAATGGTTAGTTGATGAGGGTGAAATA
Right flanking sequence: Indices 363851 -- 364350
TGTGTGGGTAGACATGTAGGTATGTTGTATTGTTGTGGTTATGCCAGGCTTAAAATTGTAGAAGC
ACAGTCAAGGTGGCACGATTACGAATGAAGCCATGCCAGCCAGACAACGCCATCCGCAGATGTAA
CCGGCTCGGAATGTCGTTCGGCTGGCTCTGACGCGAGATCAGTCATTGGGGGAGAATCTTACGAT
CTTTTGCCACAAAACGGAATATTTTGCAAAATCGGAAAATCTGGAATATCTGGATTATCTGCTGG
CCACACCCACGTCTGACACCGGTCACAGCTAGTCTATTTCACTTTGACAGCTGAACCGGCGGTGC
TTCTCTGCGCCATGCAGGACGCAACGGGCCGTATGGAAGCAACCGCCCACGGCTCGGGGTAGCAC
CTGCTGACGGCTGAATAATCAACACATCGGTGATTCACACCGGTGACTCACCCCAGTGCCGCCCC
GTCCCGCTGGCCCGGACCCCGTGGCTCGCCGCTGGCCCGGATGAC
Found at i:363785 original size:8 final size:8
Alignment explanation
Indices: 363772--363807 Score: 63
Period size: 8 Copynumber: 4.5 Consensus size: 8
363762 GTGTGGTTGA
363772 TGTGTGGT
1 TGTGTGGT
363780 TGTGTGGT
1 TGTGTGGT
*
363788 TGTGTGTT
1 TGTGTGGT
363796 TGTGTGGT
1 TGTGTGGT
363804 TGTG
1 TGTG
363808 CTGTGGTTAT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
8 26 1.00
ACGTcount: A:0.00, C:0.00, G:0.47, T:0.53
Consensus pattern (8 bp):
TGTGTGGT
Left flanking sequence: Indices 363272 -- 363771
CGTTGGAGCCCCACAGCCACACGTTGTTCTCCAGGTCCAACACCAACGTGTGCATCCCGCCCGCG
GCAAAGTCCACCGCGGCAATGTCCTTGCCGTTGGCCTGTCCGAGGGCCGGTGGCAGCACAAACGG
GTTCTTTCGCGGGCGCTTGACCTCCTTGGTCTTGGCCTCGGGCCCAAGGCCCAACTCGCACATCG
CACCGGTGCCCCAGACAAACACATCGAGCGGGGTGGTTTTGGGCTTGGGGATGTCGTTGACGTCG
GGCAAGCGGCCGTACAGGTGGAGGAGCGCCAGAGCCAGCGGCACCACCACCTTCAGCCGCTTGCG
GGGCGCCGGCAGCGCCAGTCTCAGCAGGTTTCTCTTGGGAGGCATGTTGTTTAGTTTTCGTGCGA
GCAATGAGAAGAGAAGAGAAGAGAAGAGAAGAGCTAGAAAGGAGGGAGTAAGGAGAATGGTTAGT
TGATGAGGGTGAAATATGGTTGTTGTGTGGTTGATGTGTGGTTGA
Right flanking sequence: Indices 363808 -- 364307
CTGTGGTTATGCTGTGCTGTGTTGTTATGTTGTGTGGTTGTGTTGTGTGGGTAGACATGTAGGTA
TGTTGTATTGTTGTGGTTATGCCAGGCTTAAAATTGTAGAAGCACAGTCAAGGTGGCACGATTAC
GAATGAAGCCATGCCAGCCAGACAACGCCATCCGCAGATGTAACCGGCTCGGAATGTCGTTCGGC
TGGCTCTGACGCGAGATCAGTCATTGGGGGAGAATCTTACGATCTTTTGCCACAAAACGGAATAT
TTTGCAAAATCGGAAAATCTGGAATATCTGGATTATCTGCTGGCCACACCCACGTCTGACACCGG
TCACAGCTAGTCTATTTCACTTTGACAGCTGAACCGGCGGTGCTTCTCTGCGCCATGCAGGACGC
AACGGGCCGTATGGAAGCAACCGCCCACGGCTCGGGGTAGCACCTGCTGACGGCTGAATAATCAA
CACATCGGTGATTCACACCGGTGACTCACCCCAGTGCCGCCCCGT
Done.