Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: scaffold41
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 943458
ACGTcount: A:0.23, C:0.27, G:0.27, T:0.23
Warning! 1 characters in sequence are not A, C, G, or T
File 1 of 5
Found at i:2355 original size:13 final size:12
Alignment explanation
Indices: 2325--2373 Score: 71
Period size: 13 Copynumber: 3.9 Consensus size: 12
2315 ATCGGTTGGC
2325 AAACGAGTCGGG
1 AAACGAGTCGGG
2337 AAACGAGTCGGG
1 AAACGAGTCGGG
*
2349 TAAACGAGTCAGGC
1 -AAACGAGTC-GGG
2363 AAACGAGTCGG
1 AAACGAGTCGG
2374 TTATACTTGA
Statistics
Matches: 34, Mismatches: 1, Indels: 4
0.87 0.03 0.10
Matches are distributed among these distances:
12 14 0.41
13 18 0.53
14 2 0.06
ACGTcount: A:0.35, C:0.18, G:0.37, T:0.10
Consensus pattern (12 bp):
AAACGAGTCGGG
Left flanking sequence: Indices 1825 -- 2324
CCCCTTCAATCCGGTGGCTGTGGTGCTCATGTTGACAAGCCGGTACCCCAGGGCCTCGGCGTTGG
CGTCCACGGCCAGCTCGTTCTTGATGTTGGGCAATTGGGCCACCCCAACCGTCCACTCATCACGA
AGAGTGGGAGCAGCCAGAGGAGAGCTGGCATTTTTAGAGATCGCTGCCGCAGCTGCTAGCGACAG
ATAAAGCCACGCAAACTTCATTGGGGTTTCTAGCAATTCCACGGGTTTTTATAGCGCAATTCTAC
GGGTTTGTAGCGGTCGGGCCGGCCCACCATAGCTCCGCGAAATGGGGGGTACGGAACAATTGCGG
AATAATTGCGGAAGAACAATAGGGCCATTCGGCGATCTCGGATGTAGCTTTTCGAATCAGATATG
CAAGCGCTAACGATAGCACGCTAAAAAGGCCTCTAGGTGGAGAGCTGGGACTGGTTCAGCCTCTG
CGTGGGGCTACAAGCTTCAGCACAACGAACGGTGGATCGGTTGGC
Right flanking sequence: Indices 2374 -- 2873
TTATACTTGAATCGAAATCCCCTCTCTTGCTGCCCCGCATAACAATTGGGGCCGTACGCCCCTGA
ATAGTGGTGTGATGTGTAAGAAGTGAGAAAAATGGTGGTTGATGGGGGTGGAATCCGCAATGACA
ATCGTGTGTTGTCCCCTGGTGAAGCACCCTACCGACAAAGCCAAGACTAGCTATCAATCGGAGTT
ACTAAGCAACCCCTGGCAAAATATGCACGGCACTTTGGTACGGCAGCGAAGATGTTCCGGCAGGC
AATCGGGAATGCCACACCGAGATAATGGACATCGACAGAGTAACAAGTTAACAAAGAGCCCACAA
CGCAAAAAAATAATACAGAAAGTTCGTAAAAATAAAAAATATGCGCAAGCCCGGAATCGAACCAG
GGGCCCAACGATGGCAACGTTGGATTTTACCACTAAACCACTTGCGCGCTCGAAACGACTAAGCC
AAGTAGCTGTTTCTGAAAATTTTTGTTTTGGCTGGTACAAGTAGA
Found at i:2371 original size:26 final size:25
Alignment explanation
Indices: 2325--2373 Score: 80
Period size: 26 Copynumber: 1.9 Consensus size: 25
2315 ATCGGTTGGC
*
2325 AAACGAGTCGGGAAACGAGTCGGGT
1 AAACGAGTCGGCAAACGAGTCGGGT
2350 AAACGAGTCAGGCAAACGAGTCGG
1 AAACGAGTC-GGCAAACGAGTCGG
2374 TTATACTTGA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 9 0.41
26 13 0.59
ACGTcount: A:0.35, C:0.18, G:0.37, T:0.10
Consensus pattern (25 bp):
AAACGAGTCGGCAAACGAGTCGGGT
Left flanking sequence: Indices 1825 -- 2324
CCCCTTCAATCCGGTGGCTGTGGTGCTCATGTTGACAAGCCGGTACCCCAGGGCCTCGGCGTTGG
CGTCCACGGCCAGCTCGTTCTTGATGTTGGGCAATTGGGCCACCCCAACCGTCCACTCATCACGA
AGAGTGGGAGCAGCCAGAGGAGAGCTGGCATTTTTAGAGATCGCTGCCGCAGCTGCTAGCGACAG
ATAAAGCCACGCAAACTTCATTGGGGTTTCTAGCAATTCCACGGGTTTTTATAGCGCAATTCTAC
GGGTTTGTAGCGGTCGGGCCGGCCCACCATAGCTCCGCGAAATGGGGGGTACGGAACAATTGCGG
AATAATTGCGGAAGAACAATAGGGCCATTCGGCGATCTCGGATGTAGCTTTTCGAATCAGATATG
CAAGCGCTAACGATAGCACGCTAAAAAGGCCTCTAGGTGGAGAGCTGGGACTGGTTCAGCCTCTG
CGTGGGGCTACAAGCTTCAGCACAACGAACGGTGGATCGGTTGGC
Right flanking sequence: Indices 2374 -- 2873
TTATACTTGAATCGAAATCCCCTCTCTTGCTGCCCCGCATAACAATTGGGGCCGTACGCCCCTGA
ATAGTGGTGTGATGTGTAAGAAGTGAGAAAAATGGTGGTTGATGGGGGTGGAATCCGCAATGACA
ATCGTGTGTTGTCCCCTGGTGAAGCACCCTACCGACAAAGCCAAGACTAGCTATCAATCGGAGTT
ACTAAGCAACCCCTGGCAAAATATGCACGGCACTTTGGTACGGCAGCGAAGATGTTCCGGCAGGC
AATCGGGAATGCCACACCGAGATAATGGACATCGACAGAGTAACAAGTTAACAAAGAGCCCACAA
CGCAAAAAAATAATACAGAAAGTTCGTAAAAATAAAAAATATGCGCAAGCCCGGAATCGAACCAG
GGGCCCAACGATGGCAACGTTGGATTTTACCACTAAACCACTTGCGCGCTCGAAACGACTAAGCC
AAGTAGCTGTTTCTGAAAATTTTTGTTTTGGCTGGTACAAGTAGA
Found at i:6362 original size:15 final size:15
Alignment explanation
Indices: 6342--6383 Score: 84
Period size: 15 Copynumber: 2.8 Consensus size: 15
6332 AGCTGCCGGG
6342 GATGGAGAGGCTGCA
1 GATGGAGAGGCTGCA
6357 GATGGAGAGGCTGCA
1 GATGGAGAGGCTGCA
6372 GATGGAGAGGCT
1 GATGGAGAGGCT
6384 ACAATTGACG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 27 1.00
ACGTcount: A:0.26, C:0.12, G:0.48, T:0.14
Consensus pattern (15 bp):
GATGGAGAGGCTGCA
Left flanking sequence: Indices 5842 -- 6341
CTTTGACAACAAACTCCACCGACGCATTATTGAGCACTGTGGATCCTCAGGAACTCGGAATACTG
ATTGATAGCTTCTATTCACTGGTTCAGCGAGACAACGCGACGACAGAGTCATACAGTCCCGTCAT
TAACGTTGAAATATCCAAGTCACTTACACCCACTTCGAACAATGCCTCCTCCACGACCATTCACA
GTGGAGTATTAACCCCGTTGGATTCAAGCATGGAGGTGGTGGACACCACTCGCCTAAGAAATTCG
TCTGACTCAGAGTCTACACTTCCACTGGCAAGCTCCACGGGGTTTAGTGGTTTAGTGGCAGCAGA
AGAGGATAGTTTAACGTCCTGGGCGATTGAGACCACTGTGGGAAACGGTACGGATGGCATGATGG
GGGAACCAGCAGGTGATGACGGCGAGGAGCCCATTGGAGACCTGGACGAGGCAGAAATGGAGAAT
TCAGAGGATAGAGACGGAAATGGTTCTGATAACGAAGCTGCCGGG
Right flanking sequence: Indices 6384 -- 6883
ACAATTGACGAGGAGGCTACAATGGATGTAGAGGCTATGCTGGATGCGGAAGTATCAGGTGAGCT
GGATTCGGTGCCACTGGTAACAGAGTTGATGTTCAGTACGTATGGTAACGACTCAACTCCCATCA
CAACCCTGAGTTTGAACACCGTTCTGAAAGCGCTGCTGGGACGCCGAGGCTCTCTGAGTATAAGA
GCCAGTCGCTCTAGTAGCTTTGCAAGCCGTCCAACTGGTTCGGTCAAAAGTTTCTCGCGTGTTTC
TAGCGCCAGGACCCTGTGGAGTAGTCGGGTCATACCGTGGAGTAGTCGGGATACACCGTCTGGCT
GGCGTCCTCTGGGCTCTGGTTTGCGTTTGGGCCCACTGGCTACTCGCGTTGGAGTCCGTTTACTG
GCGACCCGTGTGAGCTTTCCTGGTTCATTAACCTCACAAAGCGTCCTGTTAAAAGAGGTTGAGAC
GTCTGTGTTGTCAAACGAGAGCGCTTCATTCAGCCCTCTGACTAC
Found at i:6417 original size:18 final size:17
Alignment explanation
Indices: 6376--6420 Score: 54
Period size: 18 Copynumber: 2.5 Consensus size: 17
6366 GCTGCAGATG
* *
6376 GAGAGGCTACAATTGAC
1 GAGAGGCTACAATGGAT
6393 GAGGAGGCTACAATGGAT
1 GA-GAGGCTACAATGGAT
6411 GTAGAGGCTA
1 G-AGAGGCTA
6421 TGCTGGATGC
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
17 2 0.08
18 21 0.88
19 1 0.04
ACGTcount: A:0.33, C:0.13, G:0.36, T:0.18
Consensus pattern (17 bp):
GAGAGGCTACAATGGAT
Left flanking sequence: Indices 5876 -- 6375
CACTGTGGATCCTCAGGAACTCGGAATACTGATTGATAGCTTCTATTCACTGGTTCAGCGAGACA
ACGCGACGACAGAGTCATACAGTCCCGTCATTAACGTTGAAATATCCAAGTCACTTACACCCACT
TCGAACAATGCCTCCTCCACGACCATTCACAGTGGAGTATTAACCCCGTTGGATTCAAGCATGGA
GGTGGTGGACACCACTCGCCTAAGAAATTCGTCTGACTCAGAGTCTACACTTCCACTGGCAAGCT
CCACGGGGTTTAGTGGTTTAGTGGCAGCAGAAGAGGATAGTTTAACGTCCTGGGCGATTGAGACC
ACTGTGGGAAACGGTACGGATGGCATGATGGGGGAACCAGCAGGTGATGACGGCGAGGAGCCCAT
TGGAGACCTGGACGAGGCAGAAATGGAGAATTCAGAGGATAGAGACGGAAATGGTTCTGATAACG
AAGCTGCCGGGGATGGAGAGGCTGCAGATGGAGAGGCTGCAGATG
Right flanking sequence: Indices 6421 -- 6920
TGCTGGATGCGGAAGTATCAGGTGAGCTGGATTCGGTGCCACTGGTAACAGAGTTGATGTTCAGT
ACGTATGGTAACGACTCAACTCCCATCACAACCCTGAGTTTGAACACCGTTCTGAAAGCGCTGCT
GGGACGCCGAGGCTCTCTGAGTATAAGAGCCAGTCGCTCTAGTAGCTTTGCAAGCCGTCCAACTG
GTTCGGTCAAAAGTTTCTCGCGTGTTTCTAGCGCCAGGACCCTGTGGAGTAGTCGGGTCATACCG
TGGAGTAGTCGGGATACACCGTCTGGCTGGCGTCCTCTGGGCTCTGGTTTGCGTTTGGGCCCACT
GGCTACTCGCGTTGGAGTCCGTTTACTGGCGACCCGTGTGAGCTTTCCTGGTTCATTAACCTCAC
AAAGCGTCCTGTTAAAAGAGGTTGAGACGTCTGTGTTGTCAAACGAGAGCGCTTCATTCAGCCCT
CTGACTACTTCGTCTCCAAATGGTACCGTGAGTGGCTTCCTCGAC
Found at i:6701 original size:21 final size:21
Alignment explanation
Indices: 6659--6702 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
6649 CCAGGACCCT
*
6659 GTGGAGTAGTCGGGTCATACC
1 GTGGAGTAGTCGGGTCACACC
6680 GTGGAGTAGTCGGGAT-ACACC
1 GTGGAGTAGTCGGG-TCACACC
6701 GT
1 GT
6703 CTGGCTGGCG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 20 0.95
22 1 0.05
ACGTcount: A:0.20, C:0.18, G:0.39, T:0.23
Consensus pattern (21 bp):
GTGGAGTAGTCGGGTCACACC
Left flanking sequence: Indices 6159 -- 6658
GCAGCAGAAGAGGATAGTTTAACGTCCTGGGCGATTGAGACCACTGTGGGAAACGGTACGGATGG
CATGATGGGGGAACCAGCAGGTGATGACGGCGAGGAGCCCATTGGAGACCTGGACGAGGCAGAAA
TGGAGAATTCAGAGGATAGAGACGGAAATGGTTCTGATAACGAAGCTGCCGGGGATGGAGAGGCT
GCAGATGGAGAGGCTGCAGATGGAGAGGCTACAATTGACGAGGAGGCTACAATGGATGTAGAGGC
TATGCTGGATGCGGAAGTATCAGGTGAGCTGGATTCGGTGCCACTGGTAACAGAGTTGATGTTCA
GTACGTATGGTAACGACTCAACTCCCATCACAACCCTGAGTTTGAACACCGTTCTGAAAGCGCTG
CTGGGACGCCGAGGCTCTCTGAGTATAAGAGCCAGTCGCTCTAGTAGCTTTGCAAGCCGTCCAAC
TGGTTCGGTCAAAAGTTTCTCGCGTGTTTCTAGCGCCAGGACCCT
Right flanking sequence: Indices 6703 -- 7202
CTGGCTGGCGTCCTCTGGGCTCTGGTTTGCGTTTGGGCCCACTGGCTACTCGCGTTGGAGTCCGT
TTACTGGCGACCCGTGTGAGCTTTCCTGGTTCATTAACCTCACAAAGCGTCCTGTTAAAAGAGGT
TGAGACGTCTGTGTTGTCAAACGAGAGCGCTTCATTCAGCCCTCTGACTACTTCGTCTCCAAATG
GTACCGTGAGTGGCTTCCTCGACTCTGTACTTACCAAATCTCAGGAAGAAACCGCGAGTAGACTA
GACACTGCTATGTCTGAAGTAACAAGCAGTTTCGTTTCCGTTGCTGAGTCTGTGGCTTCTGAAGG
TCAGCATACACTTCTGTCGCTGGTTTATCCCCTTACTTCCCCACCTTCGTTAACGAACTTGCTCA
GTTTGCACCCTGGGATCCTCTTCGAGGCCATTAGCAATTCTTCAAGGGTTATGCTGGGTCCTTCG
CGAGCAAGCCCGACACGTACTACCGTTCCAGAAGTGCAATCAGGT
Found at i:22501 original size:24 final size:23
Alignment explanation
Indices: 22426--22501 Score: 89
Period size: 24 Copynumber: 3.2 Consensus size: 23
22416 GGCTGCAAGC
22426 GGTCAAACACTGGTTACGAGCGAT
1 GGTCAAAC-CTGGTTACGAGCGAT
* * * *
22450 GGCCAAATCCCGGTTACGAGCAAG
1 GGTCAAA-CCTGGTTACGAGCGAT
22474 GGTCAAAGCCTGGTTACGAGCGAT
1 GGTCAAA-CCTGGTTACGAGCGAT
22498 GGTC
1 GGTC
22502 GAGTAGCTTC
Statistics
Matches: 42, Mismatches: 9, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
24 41 0.98
25 1 0.02
ACGTcount: A:0.26, C:0.24, G:0.32, T:0.18
Consensus pattern (23 bp):
GGTCAAACCTGGTTACGAGCGAT
Left flanking sequence: Indices 21926 -- 22425
TCCCGGAGCCGGTTGACGGCAACGTTGGTGGTGCCGCGGAACCGCCGCTGGTCGAGCGGGGCCCC
GCCCGAGATCACCTGGCTCACCGCACGCAGCATCACCGGGTCATGAGCCCGGGCCTGGTAGCACA
TCCGCACAAGCAACCACACCATCTCGGGACAGTCCACCACCAAGTTGGGCTGCTGGAACCGGAAC
AAGTGGGTCACGGCCTCGGCGGTCTGCGCCAAGAGCGCGTCCGCAAACAGCTTGTCGCTGGTCCG
GGCCAGCGCGTCGATGGCCGCGGTCATGAGCCCGGTGAGGTCGTGCGAGGGGTCCTGGTGGACAC
CCAACCGCGAGTGCTTGCCGTAAACGGCGGCGGTGAGCGTGGCAAGCGTCTGCTGGCACGGGTTG
CGGGCGAGCGCCGCGGTGGCCCGCTCGATGGCCGCGTCCCAGTCGTGGTCAAACCCGGCCGCGAT
CTCTGGCCCGTGGTTACGAGCGATGGTCGAGTACTGGCTGCAAGC
Right flanking sequence: Indices 22502 -- 23001
GAGTAGCTTCGAATGGAGCCAAGCGACCCCACTCCACGGGTTCCCGCGGCTCGGGTGTGGTAGCG
GCGGATCCCGCTGAAGATATCGTCGCTCTCGGCCACCAGCTCCGCCTCTGCCCACCGCAGCTTGT
CCTCGTCACGGCAGAACATCTCCTCCAACACAAGCTCGCGCCGCCGGGGGCCCGTGAGCATGTGG
ATCTCGAGCCCCTGGATACGCGCCACCACCCACAGGTTCGCCAGCATCCCGTAGTCGTTGTCGGT
GGCCATGGGCCCCTTACGGGCCCGGCGAAGCATCCGTCTGCGCTGTTTGGGCGAGAGGGCCAGAG
CCACCACCCCCTCGATCCGGGGGAGCTCGTGGTGGGTGTGCTTGATGTAGGTACGCATCTCCTGG
GCCGCCTTGTACACGTGCTTCTCCAGCTTGCCCTCACAGATCACCACGTACTGCGTCTCGGCCTG
GTTGTGGGGCAGCAGCGGGTGTTCGGGCTCGAGCTCGCTCAAATC
Found at i:23321 original size:4 final size:4
Alignment explanation
Indices: 23312--23337 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
23302 GGTGGAAGGG
23312 GGAA GGAA GGAA GGAA GGAA GGAA GG
1 GGAA GGAA GGAA GGAA GGAA GGAA GG
23338 GAAGAGGAGA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.46, C:0.00, G:0.54, T:0.00
Consensus pattern (4 bp):
GGAA
Left flanking sequence: Indices 22812 -- 23311
GCGAGAGGGCCAGAGCCACCACCCCCTCGATCCGGGGGAGCTCGTGGTGGGTGTGCTTGATGTAG
GTACGCATCTCCTGGGCCGCCTTGTACACGTGCTTCTCCAGCTTGCCCTCACAGATCACCACGTA
CTGCGTCTCGGCCTGGTTGTGGGGCAGCAGCGGGTGTTCGGGCTCGAGCTCGCTCAAATCAAAGA
GCACGAGCTCGGCCATGCCGTAGTCGCGGGCGAGCAACTCGCAGAACTCGCCAACCACCGCGGGA
GCCGCCGGTGGGATCGTGGGAAGCTCGATCTGGGGCTGTTCGGGCTGCGAAGTGGCCTCGTCGCG
GAGATACCACGGGGTGCTGGCTTCCTGGGGGTTGGGGCAGGTGAGCAGAAGGCACCGAGCCGGTG
TGGAGGCCCGGGCCATCCGCAGGGCGGCCGTGGCAACCACACGGAGTCTCGAGGCTAGCATCATC
GGAGGGTGAGACAGTCGCGAAAAGTGCGAAAGATGGGTGGAAGGG
Right flanking sequence: Indices 23338 -- 23837
GAAGAGGAGAAAGATGGGGAAAGGGTAGTGGGAGAAAGTGGTGGGGAGAAAGTGGTGGGGTGGAA
AGGGCTGTGGTTGGGTGTTTTACTTGGGCGGGTGTGTTGGATGGGTGTGGTTAGGTGGGTGTGTT
TAGGTGGGTTTAGGTAGGTGTGGTTTCGGTTGGGTGTGTATCTAGGTGGTGGTGCTTAGATAGGT
AGGGTAGTTTGAGTGACGGTGATGGGGATGCGGTGTGGAAAGGGGAAGGGTGGTGGGGAAAAGGG
GAGAAAGGGTGTGGTTGGGTGTTTGGTGGTTCGGTGTGATTGGGTGGGTGTTATTTAGGTGAGTT
TGTACTCAGGTGGGTGGTGGTTAGAGACATAGATAGTGTAGTCTGAGTAACGGTGATGGGTTGTG
GAGCAGTAGTAAGCATAGAGATGTGGTGGAGTCAAAGGAGACAACAATAAAAATGTGGTAGGAGA
TGGCCTCGGTAACTTTAGTACCACCTCGCTTTGTACCGAGTAGTG
Found at i:23384 original size:14 final size:14
Alignment explanation
Indices: 23367--23397 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
23357 AAAGGGTAGT
23367 GGGAGAAAGTGGTG
1 GGGAGAAAGTGGTG
23381 GGGAGAAAGTGGTG
1 GGGAGAAAGTGGTG
23395 GGG
1 GGG
23398 TGGAAAGGGC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.26, C:0.00, G:0.61, T:0.13
Consensus pattern (14 bp):
GGGAGAAAGTGGTG
Left flanking sequence: Indices 22867 -- 23366
CTTGATGTAGGTACGCATCTCCTGGGCCGCCTTGTACACGTGCTTCTCCAGCTTGCCCTCACAGA
TCACCACGTACTGCGTCTCGGCCTGGTTGTGGGGCAGCAGCGGGTGTTCGGGCTCGAGCTCGCTC
AAATCAAAGAGCACGAGCTCGGCCATGCCGTAGTCGCGGGCGAGCAACTCGCAGAACTCGCCAAC
CACCGCGGGAGCCGCCGGTGGGATCGTGGGAAGCTCGATCTGGGGCTGTTCGGGCTGCGAAGTGG
CCTCGTCGCGGAGATACCACGGGGTGCTGGCTTCCTGGGGGTTGGGGCAGGTGAGCAGAAGGCAC
CGAGCCGGTGTGGAGGCCCGGGCCATCCGCAGGGCGGCCGTGGCAACCACACGGAGTCTCGAGGC
TAGCATCATCGGAGGGTGAGACAGTCGCGAAAAGTGCGAAAGATGGGTGGAAGGGGGAAGGAAGG
AAGGAAGGAAGGAAGGGAAGAGGAGAAAGATGGGGAAAGGGTAGT
Right flanking sequence: Indices 23398 -- 23897
TGGAAAGGGCTGTGGTTGGGTGTTTTACTTGGGCGGGTGTGTTGGATGGGTGTGGTTAGGTGGGT
GTGTTTAGGTGGGTTTAGGTAGGTGTGGTTTCGGTTGGGTGTGTATCTAGGTGGTGGTGCTTAGA
TAGGTAGGGTAGTTTGAGTGACGGTGATGGGGATGCGGTGTGGAAAGGGGAAGGGTGGTGGGGAA
AAGGGGAGAAAGGGTGTGGTTGGGTGTTTGGTGGTTCGGTGTGATTGGGTGGGTGTTATTTAGGT
GAGTTTGTACTCAGGTGGGTGGTGGTTAGAGACATAGATAGTGTAGTCTGAGTAACGGTGATGGG
TTGTGGAGCAGTAGTAAGCATAGAGATGTGGTGGAGTCAAAGGAGACAACAATAAAAATGTGGTA
GGAGATGGCCTCGGTAACTTTAGTACCACCTCGCTTTGTACCGAGTAGTGTGACATCACGCTGAA
AAATGTGGAGTCACGATGGACACAAAGAGAATAAGGGGTTGTGGG
Found at i:23463 original size:14 final size:14
Alignment explanation
Indices: 23432--23476 Score: 58
Period size: 14 Copynumber: 3.3 Consensus size: 14
23422 TTACTTGGGC
23432 GGGTGT-GTT-GGAT
1 GGGTGTGGTTAGG-T
23445 GGGTGTGGTTAGGT
1 GGGTGTGGTTAGGT
*
23459 GGGTGTGTTTAGGT
1 GGGTGTGGTTAGGT
23473 GGGT
1 GGGT
23477 TTAGGTAGGT
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
13 6 0.21
14 21 0.72
15 2 0.07
ACGTcount: A:0.07, C:0.00, G:0.56, T:0.38
Consensus pattern (14 bp):
GGGTGTGGTTAGGT
Left flanking sequence: Indices 22932 -- 23431
TCACCACGTACTGCGTCTCGGCCTGGTTGTGGGGCAGCAGCGGGTGTTCGGGCTCGAGCTCGCTC
AAATCAAAGAGCACGAGCTCGGCCATGCCGTAGTCGCGGGCGAGCAACTCGCAGAACTCGCCAAC
CACCGCGGGAGCCGCCGGTGGGATCGTGGGAAGCTCGATCTGGGGCTGTTCGGGCTGCGAAGTGG
CCTCGTCGCGGAGATACCACGGGGTGCTGGCTTCCTGGGGGTTGGGGCAGGTGAGCAGAAGGCAC
CGAGCCGGTGTGGAGGCCCGGGCCATCCGCAGGGCGGCCGTGGCAACCACACGGAGTCTCGAGGC
TAGCATCATCGGAGGGTGAGACAGTCGCGAAAAGTGCGAAAGATGGGTGGAAGGGGGAAGGAAGG
AAGGAAGGAAGGAAGGGAAGAGGAGAAAGATGGGGAAAGGGTAGTGGGAGAAAGTGGTGGGGAGA
AAGTGGTGGGGTGGAAAGGGCTGTGGTTGGGTGTTTTACTTGGGC
Right flanking sequence: Indices 23477 -- 23976
TTAGGTAGGTGTGGTTTCGGTTGGGTGTGTATCTAGGTGGTGGTGCTTAGATAGGTAGGGTAGTT
TGAGTGACGGTGATGGGGATGCGGTGTGGAAAGGGGAAGGGTGGTGGGGAAAAGGGGAGAAAGGG
TGTGGTTGGGTGTTTGGTGGTTCGGTGTGATTGGGTGGGTGTTATTTAGGTGAGTTTGTACTCAG
GTGGGTGGTGGTTAGAGACATAGATAGTGTAGTCTGAGTAACGGTGATGGGTTGTGGAGCAGTAG
TAAGCATAGAGATGTGGTGGAGTCAAAGGAGACAACAATAAAAATGTGGTAGGAGATGGCCTCGG
TAACTTTAGTACCACCTCGCTTTGTACCGAGTAGTGTGACATCACGCTGAAAAATGTGGAGTCAC
GATGGACACAAAGAGAATAAGGGGTTGTGGGGTACTAGAGGACAGAATGGACGTGGAATTGGAAA
CAGTAGAGAGGATGGCGTATAGTGGGTATGTCCACCACCAGGAGA
Found at i:23982 original size:13 final size:13
Alignment explanation
Indices: 23964--23993 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
23954 TGGGTATGTC
23964 CACCACCAGGAGA
1 CACCACCAGGAGA
23977 CACCACCAGGAGA
1 CACCACCAGGAGA
23990 CACC
1 CACC
23994 CGAGGCAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.37, C:0.43, G:0.20, T:0.00
Consensus pattern (13 bp):
CACCACCAGGAGA
Left flanking sequence: Indices 23464 -- 23963
TGTTTAGGTGGGTTTAGGTAGGTGTGGTTTCGGTTGGGTGTGTATCTAGGTGGTGGTGCTTAGAT
AGGTAGGGTAGTTTGAGTGACGGTGATGGGGATGCGGTGTGGAAAGGGGAAGGGTGGTGGGGAAA
AGGGGAGAAAGGGTGTGGTTGGGTGTTTGGTGGTTCGGTGTGATTGGGTGGGTGTTATTTAGGTG
AGTTTGTACTCAGGTGGGTGGTGGTTAGAGACATAGATAGTGTAGTCTGAGTAACGGTGATGGGT
TGTGGAGCAGTAGTAAGCATAGAGATGTGGTGGAGTCAAAGGAGACAACAATAAAAATGTGGTAG
GAGATGGCCTCGGTAACTTTAGTACCACCTCGCTTTGTACCGAGTAGTGTGACATCACGCTGAAA
AATGTGGAGTCACGATGGACACAAAGAGAATAAGGGGTTGTGGGGTACTAGAGGACAGAATGGAC
GTGGAATTGGAAACAGTAGAGAGGATGGCGTATAGTGGGTATGTC
Right flanking sequence: Indices 23994 -- 24493
CGAGGCAAAATTACCTACTTGATCACAACACCGAGCCATAACCACCCTGTAAGCTCCGACGGCGA
TCTTTTCAACCATCGCAATCTCTCTAACCATCGCAACCTCTCTAACCATCGCAACCTCTCTAACC
ATCGCATTCTCTCTAACCACCGTGATCTTTCCACACCCACCACCAAAACCATCACCCGGTGTCAC
GGTTTTACACCACCCACACCCACAAACAACACTACCCACTAAATACCCTCTAGCACTCACCCACC
CTAATCCCCACACAATCCCCTAACCCCCACGCAATCCCTATTCCCTTCTCATCCCACTTCCCTGT
CCCACTCTCTCATTTGCCACTGTGAGCAACACCGCACCACCATCACACCACAACCCACCACCACC
CACCACCACCCACTCAATGGCACCACCACCGTCTTCCACACACTCCACCACCCCCTACCAACCCC
CACAACCACCTCTTCTCGTCTCCCCACCACCCCGTGGGTCTACAT
Found at i:24087 original size:18 final size:18
Alignment explanation
Indices: 24066--24142 Score: 127
Period size: 18 Copynumber: 4.3 Consensus size: 18
24056 CGATCTTTTC
*
24066 AACCATCGCAATCTCTCT
1 AACCATCGCAACCTCTCT
24084 AACCATCGCAACCTCTCT
1 AACCATCGCAACCTCTCT
24102 AACCATCGCAACCTCTCT
1 AACCATCGCAACCTCTCT
**
24120 AACCATCGCATTCTCTCT
1 AACCATCGCAACCTCTCT
24138 AACCA
1 AACCA
24143 CCGTGATCTT
Statistics
Matches: 56, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 56 1.00
ACGTcount: A:0.29, C:0.42, G:0.05, T:0.25
Consensus pattern (18 bp):
AACCATCGCAACCTCTCT
Left flanking sequence: Indices 23566 -- 24065
TGTGGAAAGGGGAAGGGTGGTGGGGAAAAGGGGAGAAAGGGTGTGGTTGGGTGTTTGGTGGTTCG
GTGTGATTGGGTGGGTGTTATTTAGGTGAGTTTGTACTCAGGTGGGTGGTGGTTAGAGACATAGA
TAGTGTAGTCTGAGTAACGGTGATGGGTTGTGGAGCAGTAGTAAGCATAGAGATGTGGTGGAGTC
AAAGGAGACAACAATAAAAATGTGGTAGGAGATGGCCTCGGTAACTTTAGTACCACCTCGCTTTG
TACCGAGTAGTGTGACATCACGCTGAAAAATGTGGAGTCACGATGGACACAAAGAGAATAAGGGG
TTGTGGGGTACTAGAGGACAGAATGGACGTGGAATTGGAAACAGTAGAGAGGATGGCGTATAGTG
GGTATGTCCACCACCAGGAGACACCACCAGGAGACACCCGAGGCAAAATTACCTACTTGATCACA
ACACCGAGCCATAACCACCCTGTAAGCTCCGACGGCGATCTTTTC
Right flanking sequence: Indices 24143 -- 24642
CCGTGATCTTTCCACACCCACCACCAAAACCATCACCCGGTGTCACGGTTTTACACCACCCACAC
CCACAAACAACACTACCCACTAAATACCCTCTAGCACTCACCCACCCTAATCCCCACACAATCCC
CTAACCCCCACGCAATCCCTATTCCCTTCTCATCCCACTTCCCTGTCCCACTCTCTCATTTGCCA
CTGTGAGCAACACCGCACCACCATCACACCACAACCCACCACCACCCACCACCACCCACTCAATG
GCACCACCACCGTCTTCCACACACTCCACCACCCCCTACCAACCCCCACAACCACCTCTTCTCGT
CTCCCCACCACCCCGTGGGTCTACATTGCGCTATGCGCAAGCAACAACCACCGTAAACCACCACC
CATCCACACACACACACACTCCCCTCTCCCTACCCCACCACCATCCCACCACTATCCCACCACTA
CACTCCCTAACCACCCTACAATCACCCACACCCACTCTCACTCCA
Found at i:24293 original size:18 final size:19
Alignment explanation
Indices: 24252--24291 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
24242 CACTCACCCA
*
24252 CCCTAATCCCCACACAATC
1 CCCTAACCCCCACACAATC
*
24271 CCCTAACCCCCACGCAATC
1 CCCTAACCCCCACACAATC
24290 CC
1 CC
24292 TATTCCCTTC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.28, C:0.57, G:0.03, T:0.12
Consensus pattern (19 bp):
CCCTAACCCCCACACAATC
Left flanking sequence: Indices 23752 -- 24251
GGTGGAGTCAAAGGAGACAACAATAAAAATGTGGTAGGAGATGGCCTCGGTAACTTTAGTACCAC
CTCGCTTTGTACCGAGTAGTGTGACATCACGCTGAAAAATGTGGAGTCACGATGGACACAAAGAG
AATAAGGGGTTGTGGGGTACTAGAGGACAGAATGGACGTGGAATTGGAAACAGTAGAGAGGATGG
CGTATAGTGGGTATGTCCACCACCAGGAGACACCACCAGGAGACACCCGAGGCAAAATTACCTAC
TTGATCACAACACCGAGCCATAACCACCCTGTAAGCTCCGACGGCGATCTTTTCAACCATCGCAA
TCTCTCTAACCATCGCAACCTCTCTAACCATCGCAACCTCTCTAACCATCGCATTCTCTCTAACC
ACCGTGATCTTTCCACACCCACCACCAAAACCATCACCCGGTGTCACGGTTTTACACCACCCACA
CCCACAAACAACACTACCCACTAAATACCCTCTAGCACTCACCCA
Right flanking sequence: Indices 24292 -- 24791
TATTCCCTTCTCATCCCACTTCCCTGTCCCACTCTCTCATTTGCCACTGTGAGCAACACCGCACC
ACCATCACACCACAACCCACCACCACCCACCACCACCCACTCAATGGCACCACCACCGTCTTCCA
CACACTCCACCACCCCCTACCAACCCCCACAACCACCTCTTCTCGTCTCCCCACCACCCCGTGGG
TCTACATTGCGCTATGCGCAAGCAACAACCACCGTAAACCACCACCCATCCACACACACACACAC
TCCCCTCTCCCTACCCCACCACCATCCCACCACTATCCCACCACTACACTCCCTAACCACCCTAC
AATCACCCACACCCACTCTCACTCCACCCGTGTCCCCCACCTTATCCCACCCACCGTCCTGCATC
CGCACCTAGATCGTTGCCTTTACCAACCCCACTACCATGACTGAGAACGACCGGCCGCCGGCCAA
CGACCCGGAGGCCATGGCCTCTCGGTATCTCAAACCCACCCCCGA
Found at i:24379 original size:10 final size:10
Alignment explanation
Indices: 24348--24396 Score: 62
Period size: 10 Copynumber: 4.7 Consensus size: 10
24338 CTGTGAGCAA
24348 CACCGCACCAC
1 CACC-CACCAC
*
24359 CATCACACCAC
1 CA-CCCACCAC
*
24370 AACCCACCAC
1 CACCCACCAC
24380 CACCCACCAC
1 CACCCACCAC
24390 CACCCAC
1 CACCCAC
24397 TCAATGGCAC
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
10 23 0.70
11 9 0.27
12 1 0.03
ACGTcount: A:0.33, C:0.63, G:0.02, T:0.02
Consensus pattern (10 bp):
CACCCACCAC
Left flanking sequence: Indices 23848 -- 24347
CTGAAAAATGTGGAGTCACGATGGACACAAAGAGAATAAGGGGTTGTGGGGTACTAGAGGACAGA
ATGGACGTGGAATTGGAAACAGTAGAGAGGATGGCGTATAGTGGGTATGTCCACCACCAGGAGAC
ACCACCAGGAGACACCCGAGGCAAAATTACCTACTTGATCACAACACCGAGCCATAACCACCCTG
TAAGCTCCGACGGCGATCTTTTCAACCATCGCAATCTCTCTAACCATCGCAACCTCTCTAACCAT
CGCAACCTCTCTAACCATCGCATTCTCTCTAACCACCGTGATCTTTCCACACCCACCACCAAAAC
CATCACCCGGTGTCACGGTTTTACACCACCCACACCCACAAACAACACTACCCACTAAATACCCT
CTAGCACTCACCCACCCTAATCCCCACACAATCCCCTAACCCCCACGCAATCCCTATTCCCTTCT
CATCCCACTTCCCTGTCCCACTCTCTCATTTGCCACTGTGAGCAA
Right flanking sequence: Indices 24397 -- 24896
TCAATGGCACCACCACCGTCTTCCACACACTCCACCACCCCCTACCAACCCCCACAACCACCTCT
TCTCGTCTCCCCACCACCCCGTGGGTCTACATTGCGCTATGCGCAAGCAACAACCACCGTAAACC
ACCACCCATCCACACACACACACACTCCCCTCTCCCTACCCCACCACCATCCCACCACTATCCCA
CCACTACACTCCCTAACCACCCTACAATCACCCACACCCACTCTCACTCCACCCGTGTCCCCCAC
CTTATCCCACCCACCGTCCTGCATCCGCACCTAGATCGTTGCCTTTACCAACCCCACTACCATGA
CTGAGAACGACCGGCCGCCGGCCAACGACCCGGAGGCCATGGCCTCTCGGTATCTCAAACCCACC
CCCGACTACCCCGTGCTCGACTCTGCCCACTGCCTGTGGGACGTGGCGTGGGCCGACTTGCCCGA
GAAGGTCCGAGGCCCCCGGTTCCGGTGTGGGTCCACCGAGTGGCA
Found at i:24604 original size:14 final size:11
Alignment explanation
Indices: 24566--24597 Score: 55
Period size: 11 Copynumber: 2.9 Consensus size: 11
24556 CTCTCCCTAC
*
24566 CCCACCACCAT
1 CCCACCACTAT
24577 CCCACCACTAT
1 CCCACCACTAT
24588 CCCACCACTA
1 CCCACCACTA
24598 CACTCCCTAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.28, C:0.59, G:0.00, T:0.12
Consensus pattern (11 bp):
CCCACCACTAT
Left flanking sequence: Indices 24066 -- 24565
AACCATCGCAATCTCTCTAACCATCGCAACCTCTCTAACCATCGCAACCTCTCTAACCATCGCAT
TCTCTCTAACCACCGTGATCTTTCCACACCCACCACCAAAACCATCACCCGGTGTCACGGTTTTA
CACCACCCACACCCACAAACAACACTACCCACTAAATACCCTCTAGCACTCACCCACCCTAATCC
CCACACAATCCCCTAACCCCCACGCAATCCCTATTCCCTTCTCATCCCACTTCCCTGTCCCACTC
TCTCATTTGCCACTGTGAGCAACACCGCACCACCATCACACCACAACCCACCACCACCCACCACC
ACCCACTCAATGGCACCACCACCGTCTTCCACACACTCCACCACCCCCTACCAACCCCCACAACC
ACCTCTTCTCGTCTCCCCACCACCCCGTGGGTCTACATTGCGCTATGCGCAAGCAACAACCACCG
TAAACCACCACCCATCCACACACACACACACTCCCCTCTCCCTAC
Right flanking sequence: Indices 24598 -- 25097
CACTCCCTAACCACCCTACAATCACCCACACCCACTCTCACTCCACCCGTGTCCCCCACCTTATC
CCACCCACCGTCCTGCATCCGCACCTAGATCGTTGCCTTTACCAACCCCACTACCATGACTGAGA
ACGACCGGCCGCCGGCCAACGACCCGGAGGCCATGGCCTCTCGGTATCTCAAACCCACCCCCGAC
TACCCCGTGCTCGACTCTGCCCACTGCCTGTGGGACGTGGCGTGGGCCGACTTGCCCGAGAAGGT
CCGAGGCCCCCGGTTCCGGTGTGGGTCCACCGAGTGGCAAGTGCTCCTTTTCCCCCGGGGAAACG
GTGGGGGCGGAGCCATGCTGATCTACTTGGAGCCCGAGCCGCCCGCGGGCGACGACTGGGCCATC
TGCGCCGAGTTTGCCTTGGTGCTCGAAAACCCGTCCGATCCCACGGTGTACATGGCCAATGCGCT
GCACCACCGGTTCTCGCCGCAGGAAACCGACTGGGGGTTCTCGCT
Found at i:28390 original size:42 final size:42
Alignment explanation
Indices: 28342--28425 Score: 109
Period size: 42 Copynumber: 2.0 Consensus size: 42
28332 AGCATGTCAG
*
28342 GAGACA-G-ATAGTTACGGAAAGTAGCAATGAAGCATGACAGAA
1 GAGACAGGAATAGTTACAG-AAGTAGCAATGAA-CATGACAGAA
* *
28384 GAGACAGGAATAGTTGCAGAAGTAGCGATGAACATGACAGAA
1 GAGACAGGAATAGTTACAGAAGTAGCAATGAACATGACAGAA
28426 CAAGGAATGA
Statistics
Matches: 37, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
42 16 0.43
43 13 0.35
44 8 0.22
ACGTcount: A:0.44, C:0.12, G:0.30, T:0.14
Consensus pattern (42 bp):
GAGACAGGAATAGTTACAGAAGTAGCAATGAACATGACAGAA
Left flanking sequence: Indices 27842 -- 28341
TGGCGGTGCTTGCCAACAACGACTTGTACACCCGGTTCGGGCCCGCCGCCGGCCCCGAGAAAAAC
CCCGAGGTGGCCGCGGAACTCGAACTCGCGACCACCCACGCGCACGAGGTCAACGTGATTCCGGT
GTTCCACTTCCACAAGAACGTGGCCTACGCGCACGGGGTGCCGTTCGTGGTGCCCGTATACCCCG
ACGAGCTGCTCGAGGACACCCGTGCGCGGTTGGGCCGGCGGTTGGGCATCGGGAAGGACGCGATG
GCCAAGGTGCGGATGGCGCTTGTGGACGGCACCAACGGGGGCTACTTGCCTGCGGAGGCGGTGGT
GTACGACGAGATGCGGCGGATGCCGCCGGATGCTCATGACACCGCGCTTGCGTTGGACCACCCGG
ACCGCACGCTGCGGCGGCAGGGGCTCCCTGGCGGGGGCATCATCATCAAGGAATAGAATAGGACG
GTAGCAGCATGGCAAGAGACAGGACAGTCACAGAAAGCATGTCAG
Right flanking sequence: Indices 28426 -- 28925
CAAGGAATGATCAGAGAATAGGAATGGTAGCGAATGAAAGCACGACAGAACAAGGACAATCACAG
CTGGGTAGCGAGTGAAAGCTTGACAGAAGCTGAGTCAATTGAATAGTTACAGGACGTAGCGAATG
AACGTATGACTGAGGCAAACGGAAACAGTTAGAGGAATAATTACAGAACGTTAGCGCATGACAAG
CGGGAAGAGACAGTTAGAGGAATAGCTACAAAACTCTGGATTGAGCATTATAGGACGTCTAATTT
GTAGGGTTACTTGATGAAACGCTTGTGATTGTACTACGGTCATGAGAGGCTTTCAACAGTTCTTT
TAGAGTTGATAGTAGACTAGTTTTCGGGTACGTGATGGAATAGATTGTGATAAGTCCGTGTGAGC
GGGTACTGTATTGAGCGGGTACTTTTGTGATTAATTAGGCTAGGGAGAAGTAGGTAGAGAGACAT
AACTCGATTCATTCCTATGTTGTGTTTTTGTTAACAACTGGCTAG
Found at i:29113 original size:16 final size:16
Alignment explanation
Indices: 29090--29136 Score: 78
Period size: 16 Copynumber: 3.0 Consensus size: 16
29080 TTTTCACCAA
29090 CCCGTTACCACCTACT
1 CCCGTTACCACCTACT
*
29106 CTCGTTACCACCTACT
1 CCCGTTACCACCTACT
29122 CCCGTTACCA-CTACT
1 CCCGTTACCACCTACT
29137 TTTCAGTACA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
15 5 0.17
16 24 0.83
ACGTcount: A:0.19, C:0.47, G:0.06, T:0.28
Consensus pattern (16 bp):
CCCGTTACCACCTACT
Left flanking sequence: Indices 28590 -- 29089
GAATAATTACAGAACGTTAGCGCATGACAAGCGGGAAGAGACAGTTAGAGGAATAGCTACAAAAC
TCTGGATTGAGCATTATAGGACGTCTAATTTGTAGGGTTACTTGATGAAACGCTTGTGATTGTAC
TACGGTCATGAGAGGCTTTCAACAGTTCTTTTAGAGTTGATAGTAGACTAGTTTTCGGGTACGTG
ATGGAATAGATTGTGATAAGTCCGTGTGAGCGGGTACTGTATTGAGCGGGTACTTTTGTGATTAA
TTAGGCTAGGGAGAAGTAGGTAGAGAGACATAACTCGATTCATTCCTATGTTGTGTTTTTGTTAA
CAACTGGCTAGGTCAGCATTTGCTCAGGTTATCCACTAGCACGAATCACTCGTGTCTCCTACATA
ATCCCAGTAGACACCAAGATTTACTCGTACTGAAACACAGGATGGACAGCCTACGTAGTATGATA
ACCAACCCTGATCACCCTCTGATCACCTGGTAGCTTTTTCACCAA
Right flanking sequence: Indices 29137 -- 29636
TTTCAGTACATCGCATCACTAGTCCACCATCACTCACACCACACACACCACACACCACACACCAC
ACACCACACATCACCCATGCTGACGGACGTGCTCCAGGCATCGTGGCTACTCCGCGCAGTGGCCC
CGGTGGCCCAGCCCGTCGTCACCGACTTCGTCAACCCGCGCACCCGGCCCCGACGCGGCTACCTG
ACGCTTCTCCGGGTGGCCGACGTCGTGTACCACGACCGCGACTCCAACGACGTGTGGTGTGCGCT
CGCAGACACCACCCACGTCGTGTACGCGCGGTTCCCCTACCGGCCCGCGGTGGCCCGGTTCGAGG
CCACCTACGACCAGCGGTTCACCTACCGGATTCGCGACACCCTCGTGGCTCTCGACCGGGCCCAT
CTCCGGATGTACGCGTCGCTCCCGTTTGCAGCCCCGCGGTTGCCGCCGCCCAAGGGCTACGCGGT
GCTCGAGGTGGAGGCGTTCTCGTTGTTCCTGCGGATGGGCATCCC
Found at i:29185 original size:21 final size:22
Alignment explanation
Indices: 29160--29215 Score: 60
Period size: 23 Copynumber: 2.5 Consensus size: 22
29150 CATCACTAGT
*
29160 CCACCATCACTCACACCACACA
1 CCACCATCACACACACCACACA
*
29182 -CACCACACACCACACACCACACA
1 CCACCA-TCA-CACACACCACACA
29205 CCACACATCAC
1 CCAC-CATCAC
29216 CCATGCTGAC
Statistics
Matches: 27, Mismatches: 3, Indels: 7
0.73 0.08 0.19
Matches are distributed among these distances:
21 5 0.19
22 2 0.07
23 13 0.48
24 5 0.19
25 2 0.07
ACGTcount: A:0.39, C:0.55, G:0.00, T:0.05
Consensus pattern (22 bp):
CCACCATCACACACACCACACA
Left flanking sequence: Indices 28660 -- 29159
ATTGAGCATTATAGGACGTCTAATTTGTAGGGTTACTTGATGAAACGCTTGTGATTGTACTACGG
TCATGAGAGGCTTTCAACAGTTCTTTTAGAGTTGATAGTAGACTAGTTTTCGGGTACGTGATGGA
ATAGATTGTGATAAGTCCGTGTGAGCGGGTACTGTATTGAGCGGGTACTTTTGTGATTAATTAGG
CTAGGGAGAAGTAGGTAGAGAGACATAACTCGATTCATTCCTATGTTGTGTTTTTGTTAACAACT
GGCTAGGTCAGCATTTGCTCAGGTTATCCACTAGCACGAATCACTCGTGTCTCCTACATAATCCC
AGTAGACACCAAGATTTACTCGTACTGAAACACAGGATGGACAGCCTACGTAGTATGATAACCAA
CCCTGATCACCCTCTGATCACCTGGTAGCTTTTTCACCAACCCGTTACCACCTACTCTCGTTACC
ACCTACTCCCGTTACCACTACTTTTCAGTACATCGCATCACTAGT
Right flanking sequence: Indices 29216 -- 29715
CCATGCTGACGGACGTGCTCCAGGCATCGTGGCTACTCCGCGCAGTGGCCCCGGTGGCCCAGCCC
GTCGTCACCGACTTCGTCAACCCGCGCACCCGGCCCCGACGCGGCTACCTGACGCTTCTCCGGGT
GGCCGACGTCGTGTACCACGACCGCGACTCCAACGACGTGTGGTGTGCGCTCGCAGACACCACCC
ACGTCGTGTACGCGCGGTTCCCCTACCGGCCCGCGGTGGCCCGGTTCGAGGCCACCTACGACCAG
CGGTTCACCTACCGGATTCGCGACACCCTCGTGGCTCTCGACCGGGCCCATCTCCGGATGTACGC
GTCGCTCCCGTTTGCAGCCCCGCGGTTGCCGCCGCCCAAGGGCTACGCGGTGCTCGAGGTGGAGG
CGTTCTCGTTGTTCCTGCGGATGGGCATCCCGCCCGCACAGCCGCTCGTGGGGTGGGTCTACGCC
AGCCCGAGCTACGGCGGGGTGGTGGACTACGCGGAGGGAGCGAGG
Found at i:29188 original size:7 final size:7
Alignment explanation
Indices: 29178--29211 Score: 68
Period size: 7 Copynumber: 4.9 Consensus size: 7
29168 ACTCACACCA
29178 CACACAC
1 CACACAC
29185 CACACAC
1 CACACAC
29192 CACACAC
1 CACACAC
29199 CACACAC
1 CACACAC
29206 CACACA
1 CACACA
29212 TCACCCATGC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 27 1.00
ACGTcount: A:0.44, C:0.56, G:0.00, T:0.00
Consensus pattern (7 bp):
CACACAC
Left flanking sequence: Indices 28678 -- 29177
TCTAATTTGTAGGGTTACTTGATGAAACGCTTGTGATTGTACTACGGTCATGAGAGGCTTTCAAC
AGTTCTTTTAGAGTTGATAGTAGACTAGTTTTCGGGTACGTGATGGAATAGATTGTGATAAGTCC
GTGTGAGCGGGTACTGTATTGAGCGGGTACTTTTGTGATTAATTAGGCTAGGGAGAAGTAGGTAG
AGAGACATAACTCGATTCATTCCTATGTTGTGTTTTTGTTAACAACTGGCTAGGTCAGCATTTGC
TCAGGTTATCCACTAGCACGAATCACTCGTGTCTCCTACATAATCCCAGTAGACACCAAGATTTA
CTCGTACTGAAACACAGGATGGACAGCCTACGTAGTATGATAACCAACCCTGATCACCCTCTGAT
CACCTGGTAGCTTTTTCACCAACCCGTTACCACCTACTCTCGTTACCACCTACTCCCGTTACCAC
TACTTTTCAGTACATCGCATCACTAGTCCACCATCACTCACACCA
Right flanking sequence: Indices 29212 -- 29711
TCACCCATGCTGACGGACGTGCTCCAGGCATCGTGGCTACTCCGCGCAGTGGCCCCGGTGGCCCA
GCCCGTCGTCACCGACTTCGTCAACCCGCGCACCCGGCCCCGACGCGGCTACCTGACGCTTCTCC
GGGTGGCCGACGTCGTGTACCACGACCGCGACTCCAACGACGTGTGGTGTGCGCTCGCAGACACC
ACCCACGTCGTGTACGCGCGGTTCCCCTACCGGCCCGCGGTGGCCCGGTTCGAGGCCACCTACGA
CCAGCGGTTCACCTACCGGATTCGCGACACCCTCGTGGCTCTCGACCGGGCCCATCTCCGGATGT
ACGCGTCGCTCCCGTTTGCAGCCCCGCGGTTGCCGCCGCCCAAGGGCTACGCGGTGCTCGAGGTG
GAGGCGTTCTCGTTGTTCCTGCGGATGGGCATCCCGCCCGCACAGCCGCTCGTGGGGTGGGTCTA
CGCCAGCCCGAGCTACGGCGGGGTGGTGGACTACGCGGAGGGAGC
Found at i:29188 original size:14 final size:15
Alignment explanation
Indices: 29171--29210 Score: 64
Period size: 14 Copynumber: 2.7 Consensus size: 15
29161 CACCATCACT
29171 CACACCACACACACCA
1 CACACCACAC-CACCA
29187 CACACCACA-CACCA
1 CACACCACACCACCA
29201 CACACCACAC
1 CACACCACAC
29211 ATCACCCATG
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
14 14 0.61
16 9 0.39
ACGTcount: A:0.42, C:0.57, G:0.00, T:0.00
Consensus pattern (15 bp):
CACACCACACCACCA
Left flanking sequence: Indices 28671 -- 29170
TAGGACGTCTAATTTGTAGGGTTACTTGATGAAACGCTTGTGATTGTACTACGGTCATGAGAGGC
TTTCAACAGTTCTTTTAGAGTTGATAGTAGACTAGTTTTCGGGTACGTGATGGAATAGATTGTGA
TAAGTCCGTGTGAGCGGGTACTGTATTGAGCGGGTACTTTTGTGATTAATTAGGCTAGGGAGAAG
TAGGTAGAGAGACATAACTCGATTCATTCCTATGTTGTGTTTTTGTTAACAACTGGCTAGGTCAG
CATTTGCTCAGGTTATCCACTAGCACGAATCACTCGTGTCTCCTACATAATCCCAGTAGACACCA
AGATTTACTCGTACTGAAACACAGGATGGACAGCCTACGTAGTATGATAACCAACCCTGATCACC
CTCTGATCACCTGGTAGCTTTTTCACCAACCCGTTACCACCTACTCTCGTTACCACCTACTCCCG
TTACCACTACTTTTCAGTACATCGCATCACTAGTCCACCATCACT
Right flanking sequence: Indices 29211 -- 29710
ATCACCCATGCTGACGGACGTGCTCCAGGCATCGTGGCTACTCCGCGCAGTGGCCCCGGTGGCCC
AGCCCGTCGTCACCGACTTCGTCAACCCGCGCACCCGGCCCCGACGCGGCTACCTGACGCTTCTC
CGGGTGGCCGACGTCGTGTACCACGACCGCGACTCCAACGACGTGTGGTGTGCGCTCGCAGACAC
CACCCACGTCGTGTACGCGCGGTTCCCCTACCGGCCCGCGGTGGCCCGGTTCGAGGCCACCTACG
ACCAGCGGTTCACCTACCGGATTCGCGACACCCTCGTGGCTCTCGACCGGGCCCATCTCCGGATG
TACGCGTCGCTCCCGTTTGCAGCCCCGCGGTTGCCGCCGCCCAAGGGCTACGCGGTGCTCGAGGT
GGAGGCGTTCTCGTTGTTCCTGCGGATGGGCATCCCGCCCGCACAGCCGCTCGTGGGGTGGGTCT
ACGCCAGCCCGAGCTACGGCGGGGTGGTGGACTACGCGGAGGGAG
Found at i:29873 original size:10 final size:9
Alignment explanation
Indices: 29843--29885 Score: 59
Period size: 10 Copynumber: 4.6 Consensus size: 9
29833 TGGTGGGGTT
29843 GTTAGTGAG
1 GTTAGTGAG
*
29852 GTCAGTGAG
1 GTTAGTGAG
29861 GTTAGTGGAG
1 GTTAGT-GAG
29871 GTTAGTGAAG
1 GTTAGTG-AG
29881 GTTAG
1 GTTAG
29886 CAAAGACTAG
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
9 14 0.47
10 16 0.53
ACGTcount: A:0.23, C:0.02, G:0.44, T:0.30
Consensus pattern (9 bp):
GTTAGTGAG
Left flanking sequence: Indices 29343 -- 29842
GGTGGCCGACGTCGTGTACCACGACCGCGACTCCAACGACGTGTGGTGTGCGCTCGCAGACACCA
CCCACGTCGTGTACGCGCGGTTCCCCTACCGGCCCGCGGTGGCCCGGTTCGAGGCCACCTACGAC
CAGCGGTTCACCTACCGGATTCGCGACACCCTCGTGGCTCTCGACCGGGCCCATCTCCGGATGTA
CGCGTCGCTCCCGTTTGCAGCCCCGCGGTTGCCGCCGCCCAAGGGCTACGCGGTGCTCGAGGTGG
AGGCGTTCTCGTTGTTCCTGCGGATGGGCATCCCGCCCGCACAGCCGCTCGTGGGGTGGGTCTAC
GCCAGCCCGAGCTACGGCGGGGTGGTGGACTACGCGGAGGGAGCGAGGCAGTTGGAGGAAGACGA
CGACGGGATCTCAGATGGATATAGCTGAAGTTTTGTTGGTTTTAGGTTTGTAATGGATAGGCGTT
TTAGATGAGTGGTGGGGTTAGTGAGTAGTGGTTGGTGGTGGGGTT
Right flanking sequence: Indices 29886 -- 30385
CAAAGACTAGTGGGTGAAGTTAGTGAAGGTTAGTAAAGGGTGATGGTGAGGTTAGTGAGGTTAGT
GAAGCTTAGTGAAGGCTAGTGGTGAAGTTAGTGAAGGTTAGTGAAGGTTAATGGTGAAGTTTCGT
GTGACCTGGTTGACAAGGGTAGCCAGTGATTGCCCAATCTCACCAATTGTCTCCTGTATTCCCCT
CCTCCCCTTCCCACTTCTCTTTTACGCACTCACGTTCCCTTCGCCTCTTCCCCTTTCGGATGCGT
CGTCTAACCACACCCTCTACGCTAACCCCCTCTACCCACTCCAACCACCCTCTACCCCTTACTTT
CGTTATCGTGTATTAGATGCATTAATCGCGGATTCTCAACACAAAGTTGGTGACCACCGCCACAA
GAAGGAAGAAACACAACATCGTAGGCCCAAACCGGTCGTCGTAGGGACCCAGCCCGCGCATACGG
ATGGCCTTGGCACGCCAGTGGTAGGTAACCAACGCATACACCATG
Found at i:29877 original size:19 final size:19
Alignment explanation
Indices: 29843--29885 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
29833 TGGTGGGGTT
29843 GTTAGTGAGGTCAGTG-AG
1 GTTAGTGAGGTCAGTGAAG
*
29861 GTTAGTGGAGGTTAGTGAAG
1 GTTAGT-GAGGTCAGTGAAG
29881 GTTAG
1 GTTAG
29886 CAAAGACTAG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 6 0.27
19 9 0.41
20 7 0.32
ACGTcount: A:0.23, C:0.02, G:0.44, T:0.30
Consensus pattern (19 bp):
GTTAGTGAGGTCAGTGAAG
Left flanking sequence: Indices 29343 -- 29842
GGTGGCCGACGTCGTGTACCACGACCGCGACTCCAACGACGTGTGGTGTGCGCTCGCAGACACCA
CCCACGTCGTGTACGCGCGGTTCCCCTACCGGCCCGCGGTGGCCCGGTTCGAGGCCACCTACGAC
CAGCGGTTCACCTACCGGATTCGCGACACCCTCGTGGCTCTCGACCGGGCCCATCTCCGGATGTA
CGCGTCGCTCCCGTTTGCAGCCCCGCGGTTGCCGCCGCCCAAGGGCTACGCGGTGCTCGAGGTGG
AGGCGTTCTCGTTGTTCCTGCGGATGGGCATCCCGCCCGCACAGCCGCTCGTGGGGTGGGTCTAC
GCCAGCCCGAGCTACGGCGGGGTGGTGGACTACGCGGAGGGAGCGAGGCAGTTGGAGGAAGACGA
CGACGGGATCTCAGATGGATATAGCTGAAGTTTTGTTGGTTTTAGGTTTGTAATGGATAGGCGTT
TTAGATGAGTGGTGGGGTTAGTGAGTAGTGGTTGGTGGTGGGGTT
Right flanking sequence: Indices 29886 -- 30385
CAAAGACTAGTGGGTGAAGTTAGTGAAGGTTAGTAAAGGGTGATGGTGAGGTTAGTGAGGTTAGT
GAAGCTTAGTGAAGGCTAGTGGTGAAGTTAGTGAAGGTTAGTGAAGGTTAATGGTGAAGTTTCGT
GTGACCTGGTTGACAAGGGTAGCCAGTGATTGCCCAATCTCACCAATTGTCTCCTGTATTCCCCT
CCTCCCCTTCCCACTTCTCTTTTACGCACTCACGTTCCCTTCGCCTCTTCCCCTTTCGGATGCGT
CGTCTAACCACACCCTCTACGCTAACCCCCTCTACCCACTCCAACCACCCTCTACCCCTTACTTT
CGTTATCGTGTATTAGATGCATTAATCGCGGATTCTCAACACAAAGTTGGTGACCACCGCCACAA
GAAGGAAGAAACACAACATCGTAGGCCCAAACCGGTCGTCGTAGGGACCCAGCCCGCGCATACGG
ATGGCCTTGGCACGCCAGTGGTAGGTAACCAACGCATACACCATG
Found at i:29919 original size:10 final size:10
Alignment explanation
Indices: 29899--30000 Score: 86
Period size: 10 Copynumber: 10.0 Consensus size: 10
29889 AGACTAGTGG
29899 GTGAA-GTTA
1 GTGAAGGTTA
29908 GTGAAGGTTA
1 GTGAAGGTTA
* *
29918 GTAAAGGGTGATG
1 GTGAA-GGT--TA
29931 GTG-AGGTTA
1 GTGAAGGTTA
29940 GTG-AGGTTA
1 GTGAAGGTTA
*
29949 GTGAAGCTTA
1 GTGAAGGTTA
*
29959 GTGAAGGCTAGTG
1 GTGAAGG-T--TA
29972 GTGAA-GTTA
1 GTGAAGGTTA
29981 GTGAAGGTTA
1 GTGAAGGTTA
29991 GTGAAGGTTA
1 GTGAAGGTTA
30001 ATGGTGAAGT
Statistics
Matches: 76, Mismatches: 8, Indels: 17
0.75 0.08 0.17
Matches are distributed among these distances:
9 24 0.32
10 33 0.43
11 8 0.11
12 2 0.03
13 9 0.12
ACGTcount: A:0.28, C:0.02, G:0.40, T:0.29
Consensus pattern (10 bp):
GTGAAGGTTA
Left flanking sequence: Indices 29399 -- 29898
CAGACACCACCCACGTCGTGTACGCGCGGTTCCCCTACCGGCCCGCGGTGGCCCGGTTCGAGGCC
ACCTACGACCAGCGGTTCACCTACCGGATTCGCGACACCCTCGTGGCTCTCGACCGGGCCCATCT
CCGGATGTACGCGTCGCTCCCGTTTGCAGCCCCGCGGTTGCCGCCGCCCAAGGGCTACGCGGTGC
TCGAGGTGGAGGCGTTCTCGTTGTTCCTGCGGATGGGCATCCCGCCCGCACAGCCGCTCGTGGGG
TGGGTCTACGCCAGCCCGAGCTACGGCGGGGTGGTGGACTACGCGGAGGGAGCGAGGCAGTTGGA
GGAAGACGACGACGGGATCTCAGATGGATATAGCTGAAGTTTTGTTGGTTTTAGGTTTGTAATGG
ATAGGCGTTTTAGATGAGTGGTGGGGTTAGTGAGTAGTGGTTGGTGGTGGGGTTGTTAGTGAGGT
CAGTGAGGTTAGTGGAGGTTAGTGAAGGTTAGCAAAGACTAGTGG
Right flanking sequence: Indices 30001 -- 30500
ATGGTGAAGTTTCGTGTGACCTGGTTGACAAGGGTAGCCAGTGATTGCCCAATCTCACCAATTGT
CTCCTGTATTCCCCTCCTCCCCTTCCCACTTCTCTTTTACGCACTCACGTTCCCTTCGCCTCTTC
CCCTTTCGGATGCGTCGTCTAACCACACCCTCTACGCTAACCCCCTCTACCCACTCCAACCACCC
TCTACCCCTTACTTTCGTTATCGTGTATTAGATGCATTAATCGCGGATTCTCAACACAAAGTTGG
TGACCACCGCCACAAGAAGGAAGAAACACAACATCGTAGGCCCAAACCGGTCGTCGTAGGGACCC
AGCCCGCGCATACGGATGGCCTTGGCACGCCAGTGGTAGGTAACCAACGCATACACCATGGTCAA
CATGGCAATAAACGTAAAGAGCCCGGCAGAAATCCGACCCACCGAGTCACCGAAGTTGAGCAAAC
CCACCCCGAGCGACCCCAAAATCACCGTGAAGTTGAGCCACAGGA
Found at i:29953 original size:41 final size:41
Alignment explanation
Indices: 29899--30000 Score: 134
Period size: 41 Copynumber: 2.5 Consensus size: 41
29889 AGACTAGTGG
* * *
29899 GTGAAGTTAGTGAAGGTTAGTAAAGGGT-GATGGTGAGGTTA
1 GTGAGGTTAGTGAAGGTTAGTAAAGGCTAG-TGGTGAAGTTA
* *
29940 GTGAGGTTAGTGAAGCTTAGTGAAGGCTAGTGGTGAAGTTA
1 GTGAGGTTAGTGAAGGTTAGTAAAGGCTAGTGGTGAAGTTA
29981 GTGAAGGTTAGTGAAGGTTA
1 GTG-AGGTTAGTGAAGGTTA
30001 ATGGTGAAGT
Statistics
Matches: 53, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
41 37 0.70
42 16 0.30
ACGTcount: A:0.28, C:0.02, G:0.40, T:0.29
Consensus pattern (41 bp):
GTGAGGTTAGTGAAGGTTAGTAAAGGCTAGTGGTGAAGTTA
Left flanking sequence: Indices 29399 -- 29898
CAGACACCACCCACGTCGTGTACGCGCGGTTCCCCTACCGGCCCGCGGTGGCCCGGTTCGAGGCC
ACCTACGACCAGCGGTTCACCTACCGGATTCGCGACACCCTCGTGGCTCTCGACCGGGCCCATCT
CCGGATGTACGCGTCGCTCCCGTTTGCAGCCCCGCGGTTGCCGCCGCCCAAGGGCTACGCGGTGC
TCGAGGTGGAGGCGTTCTCGTTGTTCCTGCGGATGGGCATCCCGCCCGCACAGCCGCTCGTGGGG
TGGGTCTACGCCAGCCCGAGCTACGGCGGGGTGGTGGACTACGCGGAGGGAGCGAGGCAGTTGGA
GGAAGACGACGACGGGATCTCAGATGGATATAGCTGAAGTTTTGTTGGTTTTAGGTTTGTAATGG
ATAGGCGTTTTAGATGAGTGGTGGGGTTAGTGAGTAGTGGTTGGTGGTGGGGTTGTTAGTGAGGT
CAGTGAGGTTAGTGGAGGTTAGTGAAGGTTAGCAAAGACTAGTGG
Right flanking sequence: Indices 30001 -- 30500
ATGGTGAAGTTTCGTGTGACCTGGTTGACAAGGGTAGCCAGTGATTGCCCAATCTCACCAATTGT
CTCCTGTATTCCCCTCCTCCCCTTCCCACTTCTCTTTTACGCACTCACGTTCCCTTCGCCTCTTC
CCCTTTCGGATGCGTCGTCTAACCACACCCTCTACGCTAACCCCCTCTACCCACTCCAACCACCC
TCTACCCCTTACTTTCGTTATCGTGTATTAGATGCATTAATCGCGGATTCTCAACACAAAGTTGG
TGACCACCGCCACAAGAAGGAAGAAACACAACATCGTAGGCCCAAACCGGTCGTCGTAGGGACCC
AGCCCGCGCATACGGATGGCCTTGGCACGCCAGTGGTAGGTAACCAACGCATACACCATGGTCAA
CATGGCAATAAACGTAAAGAGCCCGGCAGAAATCCGACCCACCGAGTCACCGAAGTTGAGCAAAC
CCACCCCGAGCGACCCCAAAATCACCGTGAAGTTGAGCCACAGGA
Found at i:29981 original size:32 final size:32
Alignment explanation
Indices: 29940--30011 Score: 108
Period size: 32 Copynumber: 2.2 Consensus size: 32
29930 GGTGAGGTTA
* *
29940 GTGAGGTTAGTGAAGCTTAGTGAAGGCTAGTG
1 GTGAAGTTAGTGAAGCTTAGTGAAGGCTAATG
* *
29972 GTGAAGTTAGTGAAGGTTAGTGAAGGTTAATG
1 GTGAAGTTAGTGAAGCTTAGTGAAGGCTAATG
30004 GTGAAGTT
1 GTGAAGTT
30012 TCGTGTGACC
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
32 36 1.00
ACGTcount: A:0.28, C:0.03, G:0.39, T:0.31
Consensus pattern (32 bp):
GTGAAGTTAGTGAAGCTTAGTGAAGGCTAATG
Left flanking sequence: Indices 29440 -- 29939
CCCGCGGTGGCCCGGTTCGAGGCCACCTACGACCAGCGGTTCACCTACCGGATTCGCGACACCCT
CGTGGCTCTCGACCGGGCCCATCTCCGGATGTACGCGTCGCTCCCGTTTGCAGCCCCGCGGTTGC
CGCCGCCCAAGGGCTACGCGGTGCTCGAGGTGGAGGCGTTCTCGTTGTTCCTGCGGATGGGCATC
CCGCCCGCACAGCCGCTCGTGGGGTGGGTCTACGCCAGCCCGAGCTACGGCGGGGTGGTGGACTA
CGCGGAGGGAGCGAGGCAGTTGGAGGAAGACGACGACGGGATCTCAGATGGATATAGCTGAAGTT
TTGTTGGTTTTAGGTTTGTAATGGATAGGCGTTTTAGATGAGTGGTGGGGTTAGTGAGTAGTGGT
TGGTGGTGGGGTTGTTAGTGAGGTCAGTGAGGTTAGTGGAGGTTAGTGAAGGTTAGCAAAGACTA
GTGGGTGAAGTTAGTGAAGGTTAGTAAAGGGTGATGGTGAGGTTA
Right flanking sequence: Indices 30012 -- 30511
TCGTGTGACCTGGTTGACAAGGGTAGCCAGTGATTGCCCAATCTCACCAATTGTCTCCTGTATTC
CCCTCCTCCCCTTCCCACTTCTCTTTTACGCACTCACGTTCCCTTCGCCTCTTCCCCTTTCGGAT
GCGTCGTCTAACCACACCCTCTACGCTAACCCCCTCTACCCACTCCAACCACCCTCTACCCCTTA
CTTTCGTTATCGTGTATTAGATGCATTAATCGCGGATTCTCAACACAAAGTTGGTGACCACCGCC
ACAAGAAGGAAGAAACACAACATCGTAGGCCCAAACCGGTCGTCGTAGGGACCCAGCCCGCGCAT
ACGGATGGCCTTGGCACGCCAGTGGTAGGTAACCAACGCATACACCATGGTCAACATGGCAATAA
ACGTAAAGAGCCCGGCAGAAATCCGACCCACCGAGTCACCGAAGTTGAGCAAACCCACCCCGAGC
GACCCCAAAATCACCGTGAAGTTGAGCCACAGGAGGAAGGTACGC
Found at i:29983 original size:22 final size:23
Alignment explanation
Indices: 29949--29993 Score: 74
Period size: 22 Copynumber: 2.0 Consensus size: 23
29939 AGTGAGGTTA
29949 GTGAAGCTTAGTGAAGGCTAGTG
1 GTGAAGCTTAGTGAAGGCTAGTG
*
29972 GTGAAG-TTAGTGAAGGTTAGTG
1 GTGAAGCTTAGTGAAGGCTAGTG
29994 AAGGTTAATG
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
22 15 0.71
23 6 0.29
ACGTcount: A:0.27, C:0.04, G:0.40, T:0.29
Consensus pattern (23 bp):
GTGAAGCTTAGTGAAGGCTAGTG
Left flanking sequence: Indices 29449 -- 29948
GCCCGGTTCGAGGCCACCTACGACCAGCGGTTCACCTACCGGATTCGCGACACCCTCGTGGCTCT
CGACCGGGCCCATCTCCGGATGTACGCGTCGCTCCCGTTTGCAGCCCCGCGGTTGCCGCCGCCCA
AGGGCTACGCGGTGCTCGAGGTGGAGGCGTTCTCGTTGTTCCTGCGGATGGGCATCCCGCCCGCA
CAGCCGCTCGTGGGGTGGGTCTACGCCAGCCCGAGCTACGGCGGGGTGGTGGACTACGCGGAGGG
AGCGAGGCAGTTGGAGGAAGACGACGACGGGATCTCAGATGGATATAGCTGAAGTTTTGTTGGTT
TTAGGTTTGTAATGGATAGGCGTTTTAGATGAGTGGTGGGGTTAGTGAGTAGTGGTTGGTGGTGG
GGTTGTTAGTGAGGTCAGTGAGGTTAGTGGAGGTTAGTGAAGGTTAGCAAAGACTAGTGGGTGAA
GTTAGTGAAGGTTAGTAAAGGGTGATGGTGAGGTTAGTGAGGTTA
Right flanking sequence: Indices 29994 -- 30493
AAGGTTAATGGTGAAGTTTCGTGTGACCTGGTTGACAAGGGTAGCCAGTGATTGCCCAATCTCAC
CAATTGTCTCCTGTATTCCCCTCCTCCCCTTCCCACTTCTCTTTTACGCACTCACGTTCCCTTCG
CCTCTTCCCCTTTCGGATGCGTCGTCTAACCACACCCTCTACGCTAACCCCCTCTACCCACTCCA
ACCACCCTCTACCCCTTACTTTCGTTATCGTGTATTAGATGCATTAATCGCGGATTCTCAACACA
AAGTTGGTGACCACCGCCACAAGAAGGAAGAAACACAACATCGTAGGCCCAAACCGGTCGTCGTA
GGGACCCAGCCCGCGCATACGGATGGCCTTGGCACGCCAGTGGTAGGTAACCAACGCATACACCA
TGGTCAACATGGCAATAAACGTAAAGAGCCCGGCAGAAATCCGACCCACCGAGTCACCGAAGTTG
AGCAAACCCACCCCGAGCGACCCCAAAATCACCGTGAAGTTGAGC
Found at i:29990 original size:73 final size:75
Alignment explanation
Indices: 29856--30007 Score: 227
Period size: 73 Copynumber: 2.1 Consensus size: 75
29846 AGTGAGGTCA
*
29856 GTGAGGTTAGTGGAGGTTAGTGAAGGTTAGCAAAGACTAGTGGGTGAAGTTAGTGAAGGTTAGTA
1 GTGAGGTTAGTGGAGGTTAGTGAAGCTTAGCAAAGACTAGTGGGTGAAGTTAGTGAAGGTTAGTA
*
29921 AAGGGTGATG
66 AAGGGTAATG
** * *
29931 GTGAGGTTAGT-GAGGTTAGTGAAGCTTAGTGAAGGCTAGT-GGTGAAGTTAGTGAAGGTTAGTG
1 GTGAGGTTAGTGGAGGTTAGTGAAGCTTAGCAAAGACTAGTGGGTGAAGTTAGTGAAGGTTAGTA
*
29994 AAGGTTAATG
66 AAGGGTAATG
30004 GTGA
1 GTGA
30008 AGTTTCGTGT
Statistics
Matches: 70, Mismatches: 7, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
73 34 0.49
74 25 0.36
75 11 0.16
ACGTcount: A:0.28, C:0.03, G:0.41, T:0.28
Consensus pattern (75 bp):
GTGAGGTTAGTGGAGGTTAGTGAAGCTTAGCAAAGACTAGTGGGTGAAGTTAGTGAAGGTTAGTA
AAGGGTAATG
Left flanking sequence: Indices 29356 -- 29855
GTGTACCACGACCGCGACTCCAACGACGTGTGGTGTGCGCTCGCAGACACCACCCACGTCGTGTA
CGCGCGGTTCCCCTACCGGCCCGCGGTGGCCCGGTTCGAGGCCACCTACGACCAGCGGTTCACCT
ACCGGATTCGCGACACCCTCGTGGCTCTCGACCGGGCCCATCTCCGGATGTACGCGTCGCTCCCG
TTTGCAGCCCCGCGGTTGCCGCCGCCCAAGGGCTACGCGGTGCTCGAGGTGGAGGCGTTCTCGTT
GTTCCTGCGGATGGGCATCCCGCCCGCACAGCCGCTCGTGGGGTGGGTCTACGCCAGCCCGAGCT
ACGGCGGGGTGGTGGACTACGCGGAGGGAGCGAGGCAGTTGGAGGAAGACGACGACGGGATCTCA
GATGGATATAGCTGAAGTTTTGTTGGTTTTAGGTTTGTAATGGATAGGCGTTTTAGATGAGTGGT
GGGGTTAGTGAGTAGTGGTTGGTGGTGGGGTTGTTAGTGAGGTCA
Right flanking sequence: Indices 30008 -- 30507
AGTTTCGTGTGACCTGGTTGACAAGGGTAGCCAGTGATTGCCCAATCTCACCAATTGTCTCCTGT
ATTCCCCTCCTCCCCTTCCCACTTCTCTTTTACGCACTCACGTTCCCTTCGCCTCTTCCCCTTTC
GGATGCGTCGTCTAACCACACCCTCTACGCTAACCCCCTCTACCCACTCCAACCACCCTCTACCC
CTTACTTTCGTTATCGTGTATTAGATGCATTAATCGCGGATTCTCAACACAAAGTTGGTGACCAC
CGCCACAAGAAGGAAGAAACACAACATCGTAGGCCCAAACCGGTCGTCGTAGGGACCCAGCCCGC
GCATACGGATGGCCTTGGCACGCCAGTGGTAGGTAACCAACGCATACACCATGGTCAACATGGCA
ATAAACGTAAAGAGCCCGGCAGAAATCCGACCCACCGAGTCACCGAAGTTGAGCAAACCCACCCC
GAGCGACCCCAAAATCACCGTGAAGTTGAGCCACAGGAGGAAGGT
Found at i:31048 original size:10 final size:10
Alignment explanation
Indices: 31018--31050 Score: 50
Period size: 10 Copynumber: 3.4 Consensus size: 10
31008 TTTAAGCGGT
31018 GGTTGCTGGC
1 GGTTGCTGGC
*
31028 GATTGCT-GC
1 GGTTGCTGGC
31037 GGTTGCTGGC
1 GGTTGCTGGC
31047 GGTT
1 GGTT
31051 AGTTCTCATA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
9 8 0.40
10 12 0.60
ACGTcount: A:0.03, C:0.18, G:0.45, T:0.33
Consensus pattern (10 bp):
GGTTGCTGGC
Left flanking sequence: Indices 30518 -- 31017
GCAAAGAACACCTTGGGCTCGACGCGGGCGGGCAAGGCAATTCGCTTGTTGTTGGCAGACATCGA
AGCTAAGTTTGTGGCGAAAACAGACGGCAATGGCGGCTTATTATCTGACTGCTGCCATTTATTGC
AGTGCGTCACACGTGGGGGGTCCCGGTTAGGGGCCCGGGCAATTTACGAGTCACACGAGGCTAGG
GGAAAGGAGGCTGGCGGGCGGTGGTGGCGGGGTAGGGGGTGTAGAGAGGTGGACGTGGAGTGGGC
GGGCTGCGCTGGTGGCCCCACTGCTCCCAAACCGCACGGTTTGTAAGGTTGCTGTCACTACTTCC
GTGTCTGTCGCGCTGGAAATTAACGGTAGACCGGCTATTAATAGGCCTGCGCACAACACTGGAGC
AGCCGCGTCGGCACGGTGTCTAGCACGTCAATGCGGCTCTGACATCTACGGGGGCCCGTGCCGGA
GGCGATGGGCGTTTACGAGTGGTTTCCCACGGGTGTTTAAGCGGT
Right flanking sequence: Indices 31051 -- 31550
AGTTCTCATATTTCAATGGTGATTTCAACTCTACGGAGACGTGTCTCCGCGATCATGACGATAAC
GCAGTTTGAAAAATATTATAATCATTAAACTTACTGGTTGGTGTGTTGTGGTGACTGAAAAATTC
GCGATGGGTTTTATCGCTGGTGAGTTACCCGCACGTGAGGTTGGTACAGGAAGACGGGCGAGTAC
GTAGGGTTGAGTGGAATGCGAGGATGTGGGGTGGAGTGAAATCGGTGCGAAGAAGGAAATGGAGG
ATTGCGAAACAACCACGCCACTTTGTTATCTACGGAAATGTGCTAACTCCGGCCGGGGAAGCTTC
GCCACGGTAATCCCGTTGGGTTATGTGCAGGACACTAACATCGGGTCAAGATGGTCTCAACGTAA
CCACAATCGAGTAGCTTGACGGGAAAAAACACCGTTGTGTTGGGTAATGGGGCCCAGAGGAAGGC
GGTAGACCTATCCACTTCCTTCTTCTACCCACCTACTTCCTTCTT
Found at i:33733 original size:27 final size:27
Alignment explanation
Indices: 33692--33748 Score: 78
Period size: 27 Copynumber: 2.1 Consensus size: 27
33682 GCACGTGAGC
*
33692 GTGGCGTTTGAGCTGCGCGAGATGGTG
1 GTGGCGCTTGAGCTGCGCGAGATGGTG
* * *
33719 GTGGCGCTTGCGCTGGGCGAGGTGGTG
1 GTGGCGCTTGAGCTGCGCGAGATGGTG
33746 GTG
1 GTG
33749 TGTAGGTTTG
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.07, C:0.16, G:0.53, T:0.25
Consensus pattern (27 bp):
GTGGCGCTTGAGCTGCGCGAGATGGTG
Left flanking sequence: Indices 33192 -- 33691
GGATTCTCCCGGTGACGCCCACCGACTTCTGCTACTTCAACGGGGGCCACGACCCGCACTACTTG
TTCCTCTTGCTGAACTACGGGCTGGTGTACTTGGTCCCGTACTCCACCACCGGGGTGGTTTCTCC
CCTGGACCTCCTTTTGCCGCCGTCGTTGCTGATGGTGGTGCCTCCGGTGACGTTCTCCAAGGTCA
GACAGGCGTCCAGAACCGAGTGGTTCTCGTTGTTGCTGCTGCGCAAGAGCACCGGGGCGCTGGCA
CGGCTGGCGATGCTTTTGCGTGGCGGGATGCCCGCCCACGAGAACCTGACTCCCCGGCCCATTGG
CGCTGACTCCGACGCCCGGCTGATCCTCATCACCGGCCACGAGCACGGGGTGGTGCGGATGCTCG
ACATCTCGCGTGGCGGCCAGCAGACCCCCGAGCTGATGGTCACCATCAACTTGGGCGACTCGTTG
TTCAGCTACGGGCACCCCAAGTACCTCAAGGTGCTGCACGTGAGC
Right flanking sequence: Indices 33749 -- 34248
TGTAGGTTTGGCAAGGCCCACAACCCGACGCCGCCCCAGGGAGTGTGCCAGGTGGACTACAGCCA
GTGCCCGGTCCAGCACGCCAACGAGGACGCCAAGTTGATCAACATCGAGCTGCGCACCGCGGGCA
ACGGCGTGGCCACCTTCATTCCGCTGTTCCTCTTGCAGTTGGCCCTGGGCGAGAACATCACCTGT
GTCAAGATGTGCAACGCAGGCTTCGCGGCGGTGGCGTATCTGACGGGCAGGCTCGTGGTGTGCGA
CATCACCCGCGGCCCCGCCGTCATCTTCAACACCAAGCTGCTCTCCGAGTTCCTTGTGTCGACCG
AAAAGTGCCACGCCACGTGCCTCGAGTTCCTGATCATGGAGTGCGGGCACGACGGGTACTCGCTG
TTGATGCTCCTCGTGGGCACCAACGGCGGCGGCCACTTCTTGCTGTTCAAGGTGGTGCCCATGGG
CAACGGGGGCTGGCTGGTGCAGTTTGAGAACAAGCTGGCCAACCT
Found at i:35796 original size:16 final size:16
Alignment explanation
Indices: 35760--35804 Score: 65
Period size: 16 Copynumber: 2.9 Consensus size: 16
35750 CCTAGCTCAA
*
35760 CTCTTCTCTT-CCCAT
1 CTCTTCTCTTCCCCAC
*
35775 CGCTTCTCTTCCCCAC
1 CTCTTCTCTTCCCCAC
35791 CTCTTCTCTTCCCC
1 CTCTTCTCTTCCCC
35805 CTCTGATCTC
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
15 9 0.35
16 17 0.65
ACGTcount: A:0.04, C:0.53, G:0.02, T:0.40
Consensus pattern (16 bp):
CTCTTCTCTTCCCCAC
Left flanking sequence: Indices 35260 -- 35759
TATATAAGAGAATGGAATCGGAAGGTTAGGAAACTACACTGGATGGATTGGAAGGTTAGGAACTA
CACCAAATAGAATCGAGGTAAGGAACTACACTGAATCGGAAGGTAAGGAAACGAAACCAGTGCAT
TTTGAGTGGAATTACAGGATGTGGCGTGAGTCTGGTTGTCTTCAGTGACTGTTTTGAAGAATTGA
ATTGGTACAGGATTTGCAGCCATTTTGCAACATGTCCTGCGTCTACATTCGTAAACAGATTGGAC
TAGACACAAAGTGGCGGGATGACAAAGGGGGCGTTTTGGTGAAGTAATGGGCAGGGGCGTTCATC
TGACCACTCAAATTGGGTTTCTTTCGAGGTGGTGGCTATGAAGTGCTCCGAAATGATCTAAGGAA
TACCATCCTACGAAACAAACAATCAATAATACAAAGGGAAAGCATTACCAAAAACCACATTTTAA
CCGTTGCCTTTTCTTTACTACCCATTTTCTCCCGACCTAGCTCAA
Right flanking sequence: Indices 35805 -- 36304
CTCTGATCTCTCACGTGACCGCGTTTGTTTACGTCCGATCTCCAAGAAGACCACCTTCAGCCCAC
CACCCACACCCACTACCCACCCCACCATGGCTGATAAGGAGAACATGCTGCCGTTGGCGCTCCGC
CAGGCGCTCCGGCCCGTGGGAAGCTCCCCCTACCGCGCTGGATTGCGCCAATCAACCGCTGAAAA
CAGCCCTGGATCCCCCACCAGAAAGCCCTTGGACGCTGAGCAGAAGTCGCCCCCGGCATTTGATT
TGGAAGGCACGCTTGCCCAGATCGAGCTGCAAACCAAACAAACGGGCATTGACGTCGGCCAGCTC
TGGGAGCGGTCCAAGAACAACAACAACTTTCTCCAGAAGCTCGTGGCCGAGATCGCTGCCTACGC
CAATGAAGTGACCACCGAGGGCAACGCCACCAAGAACGACATCCACAACATTGTAGCGAAGCTCG
ACGACCTTCTGGAGCTCATAAAGACCCCCCAGCCCGAGATCGTGG
Found at i:36419 original size:12 final size:12
Alignment explanation
Indices: 36382--36412 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
36372 CTTAAAAACA
*
36382 GAGAAACAGACC
1 GAGAAACAGACT
36394 GAGAAACAGACT
1 GAGAAACAGACT
36406 GAGAAAC
1 GAGAAAC
36413 CGGCTGACAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.52, C:0.19, G:0.26, T:0.03
Consensus pattern (12 bp):
GAGAAACAGACT
Left flanking sequence: Indices 35882 -- 36381
CTACCCACCCCACCATGGCTGATAAGGAGAACATGCTGCCGTTGGCGCTCCGCCAGGCGCTCCGG
CCCGTGGGAAGCTCCCCCTACCGCGCTGGATTGCGCCAATCAACCGCTGAAAACAGCCCTGGATC
CCCCACCAGAAAGCCCTTGGACGCTGAGCAGAAGTCGCCCCCGGCATTTGATTTGGAAGGCACGC
TTGCCCAGATCGAGCTGCAAACCAAACAAACGGGCATTGACGTCGGCCAGCTCTGGGAGCGGTCC
AAGAACAACAACAACTTTCTCCAGAAGCTCGTGGCCGAGATCGCTGCCTACGCCAATGAAGTGAC
CACCGAGGGCAACGCCACCAAGAACGACATCCACAACATTGTAGCGAAGCTCGACGACCTTCTGG
AGCTCATAAAGACCCCCCAGCCCGAGATCGTGGCGAAGCTAGACCTGCTACAACAGAGGGATAAT
AAGGACATTGACGAGCTAGTGGCTCGTTTAGGGGGCTTAAAAACA
Right flanking sequence: Indices 36413 -- 36912
CGGCTGACATGGGGTCCAAGACCTCGGAAACCATCTTGGAGCAACAAAAGACCATCTCCAAGCAA
CAGGCCACCATCTCCGAGCAGGCGGCGAAGATTGCCGAGTTTGAGCGGGTCTCGGGCTCGTTGGA
CGCGCTCACGGTGAAATACAAGCAGATGAGCGACGCCTACACCGAGAAATACGCCGAGTTCGAGG
CTCTCCACGCGCGGTTTGTAGCGCTCGAGAGCGAGGCCGAGGCGGTGGCGAAGCTTGCGCCGTCC
AAACCGCGGATCGCGTCGTTCTCGGCGTTGAAGAAGTCGTTGTGCGAGCCCGAACCGGTGCCAGA
GAACTAGGGCTACGGTAGCGCTACGGTAGCGAGTTTCATCTGATGAAATTGCGGGGAGCGGACGA
GATAGCATATTGCATGTAATAAACGATTAGGCCAACGGAGCAAGCACCAATGGGAGTAGGCAGTG
TGAATTCGATGCATTAGATGCACCCGATGCTTGGACCGTTCATCG
Found at i:37387 original size:15 final size:15
Alignment explanation
Indices: 37356--37396 Score: 57
Period size: 15 Copynumber: 2.8 Consensus size: 15
37346 GATCCTTATT
*
37356 TCTCTCT-CTATCAA
1 TCTCTCTCCTACCAA
*
37370 TCTTTCTCCTACCAA
1 TCTCTCTCCTACCAA
37385 TCTCTCTCCTAC
1 TCTCTCTCCTAC
37397 AACGAGACTC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
14 6 0.26
15 17 0.74
ACGTcount: A:0.17, C:0.41, G:0.00, T:0.41
Consensus pattern (15 bp):
TCTCTCTCCTACCAA
Left flanking sequence: Indices 36856 -- 37355
GAGTAGGCAGTGTGAATTCGATGCATTAGATGCACCCGATGCTTGGACCGTTCATCGTTTTCAGC
ATTGCCTTACTAGGTACTCACCCTACCTGTAGTCTAAGAATACCTTGAGAACTTTTGTATGGGAA
GAAACTGAAATTTCAAGTATTTGACTTGCTCCGCTGCCACTATTCTGCATTGCCACTGGTCCTGT
TCTTCACTACAAGGACCACTAATCATCACTTAGAGTGGTTCAACCAACGTGGAACACTTGTCATC
ACTCTACCCTAACTATTTCAGTTTCCCTAAAGCACCAAACTCGTATTCCTGAAACAAACGCCACT
CATCTCGACACCTCATACCATTCCTCTACCCATTCGCTAAAATCACAACAGGCCAGTAAACAACA
ACCTTCGTATCTCTTGATAGATCATAACCACTATTCCACCCACCACAATCAGCACGATCCGTCTC
ACCGACACAGTGTATACACCGAACCTTAAACCTATGATCCTTATT
Right flanking sequence: Indices 37397 -- 37896
AACGAGACTCTTCCATACGATCATTACTATTGCCAGCGTTTCATCCCTCTACTAGTCTCTCACTA
ACCAGATCCCCTACTACACCCAAATCACCACCAAATCACCACCCACCACTCACAACCACCTCCTT
CTCCTCCCCCCTCTACACCCAGCACACTCACGCCTCCCTCCATCCCTCCTCACACCTCTCCTCCG
CTTATACTCTCCTCACGCACACCCGATCCACCGATAAGCCGTTCCACCCACACCAACTCCACCAT
TCCCCACCAAAACCCTAAAAAAACCCACCCAAACCCAAAACCACCCCCACCACACCACGACCACC
CTACCACCGCACCACACCACTCCCCCACCACCCCCACTCCGCCGCTGGTTCCCCCACCCATCCAC
CCCACCACCTCTTTTCGGCGCGCGATGTCTGCCGATTTTCGACGCAGCCAGATTCAGTGGGGCGA
CTATGGACTTTGACAACTACCTGCTGCTACCAACGTGTCCCCACT
Found at i:38324 original size:12 final size:12
Alignment explanation
Indices: 38307--38345 Score: 78
Period size: 12 Copynumber: 3.2 Consensus size: 12
38297 CAATGGTTTT
38307 TCCGGTGCCTCC
1 TCCGGTGCCTCC
38319 TCCGGTGCCTCC
1 TCCGGTGCCTCC
38331 TCCGGTGCCTCC
1 TCCGGTGCCTCC
38343 TCC
1 TCC
38346 TCCGATGCCG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 27 1.00
ACGTcount: A:0.00, C:0.51, G:0.23, T:0.26
Consensus pattern (12 bp):
TCCGGTGCCTCC
Left flanking sequence: Indices 37807 -- 38306
CGCGATGTCTGCCGATTTTCGACGCAGCCAGATTCAGTGGGGCGACTATGGACTTTGACAACTAC
CTGCTGCTACCAACGTGTCCCCACTTGGCGCAGGTGTTGGCCAAGGCGCGTGACAACGTGCTCAC
CACCTACCGCCAGGCGGTGCTGATCACCCAGCTCCTGCACGCGCTGCGGTGCACCTCGCGCAAGG
ACCAGCTGGAGGTGCCCACGGCGAAGTTGGTGCGGATGAAGACGGCGGCACTCGCGTGCTCGGAG
TGCCAGGTGTACCACGAGTGCAACTACATCTGTCTCCAGTGCCCGCATGTGGGGTGCGATGTGCA
CACCCGCGCCCACTTCAAGAGCAACCACCACATGTTTGGCATTGATCTGGGGTGTGGGGTGATGT
ACTGCTTTGCCTGCGACGCCTACACCAACCACGACGCCCTAGACTCCCTCCGGCTAGGGAGATCG
GGCCCTGCGGCCAACGGCTCCGCCAACGGAGGGGCCAATGGTTTT
Right flanking sequence: Indices 38346 -- 38845
TCCGATGCCGCCGGGTACACCGATCCGGCGCCACGGGCGATGGCGGGCCTCAAGGGGTTTGTCAA
CCTTGGCGCCACCTGCTTCATGCTGCTGATTCTCCAGACGCTCATCCACAACCCGCTCATGAAGC
ACTACTTCGTCAACAACGACCTCCACTACTTCAACTGCCCGAAAAACAAAGCATTCTTGGTGAGC
CAGCTGGTGGACGAGGGCAACGCCTGCATCACCTGTGCCCTCGACAACATCTTCACTCTGTTCTA
CACGCTGGCGCTGCCCGAGGGGTTTGGGTTGACCCATTTGTTGCTGACGGCGTGGTACAAAAACA
ACCTGCTCGCGGGGTTCCAGGAGCAGGACGCGCACGAGTTCTGGCAGTTTATGCTCAACGAGATC
CACCTGGACCACGAGCTCATTCTGGAGGTGGCCAACGGGCACTTCAAGCGCGACCCCGACGAGCA
GTGTGCGTGTGCGACCCACACCACGTTTGGCGGGTTGTTGGAGCT
Found at i:38344 original size:15 final size:14
Alignment explanation
Indices: 38314--38354 Score: 50
Period size: 15 Copynumber: 3.0 Consensus size: 14
38304 TTTTCCGGTG
38314 CCTCCTCCGGTG--
1 CCTCCTCCGGTGCC
38326 CCTCCTCCGGTGCC
1 CCTCCTCCGGTGCC
*
38340 TCCTCCTCCGATGCC
1 -CCTCCTCCGGTGCC
38355 GCCGGGTACA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
12 12 0.48
15 13 0.52
ACGTcount: A:0.02, C:0.54, G:0.20, T:0.24
Consensus pattern (14 bp):
CCTCCTCCGGTGCC
Left flanking sequence: Indices 37814 -- 38313
TCTGCCGATTTTCGACGCAGCCAGATTCAGTGGGGCGACTATGGACTTTGACAACTACCTGCTGC
TACCAACGTGTCCCCACTTGGCGCAGGTGTTGGCCAAGGCGCGTGACAACGTGCTCACCACCTAC
CGCCAGGCGGTGCTGATCACCCAGCTCCTGCACGCGCTGCGGTGCACCTCGCGCAAGGACCAGCT
GGAGGTGCCCACGGCGAAGTTGGTGCGGATGAAGACGGCGGCACTCGCGTGCTCGGAGTGCCAGG
TGTACCACGAGTGCAACTACATCTGTCTCCAGTGCCCGCATGTGGGGTGCGATGTGCACACCCGC
GCCCACTTCAAGAGCAACCACCACATGTTTGGCATTGATCTGGGGTGTGGGGTGATGTACTGCTT
TGCCTGCGACGCCTACACCAACCACGACGCCCTAGACTCCCTCCGGCTAGGGAGATCGGGCCCTG
CGGCCAACGGCTCCGCCAACGGAGGGGCCAATGGTTTTTCCGGTG
Right flanking sequence: Indices 38355 -- 38854
GCCGGGTACACCGATCCGGCGCCACGGGCGATGGCGGGCCTCAAGGGGTTTGTCAACCTTGGCGC
CACCTGCTTCATGCTGCTGATTCTCCAGACGCTCATCCACAACCCGCTCATGAAGCACTACTTCG
TCAACAACGACCTCCACTACTTCAACTGCCCGAAAAACAAAGCATTCTTGGTGAGCCAGCTGGTG
GACGAGGGCAACGCCTGCATCACCTGTGCCCTCGACAACATCTTCACTCTGTTCTACACGCTGGC
GCTGCCCGAGGGGTTTGGGTTGACCCATTTGTTGCTGACGGCGTGGTACAAAAACAACCTGCTCG
CGGGGTTCCAGGAGCAGGACGCGCACGAGTTCTGGCAGTTTATGCTCAACGAGATCCACCTGGAC
CACGAGCTCATTCTGGAGGTGGCCAACGGGCACTTCAAGCGCGACCCCGACGAGCAGTGTGCGTG
TGCGACCCACACCACGTTTGGCGGGTTGTTGGAGCTGCGGATCCG
Found at i:42449 original size:18 final size:18
Alignment explanation
Indices: 42428--42470 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
42418 GACGAGCAAG
42428 AGCAAGGCCA-CGAAAACC
1 AGCAAGGCCAGC-AAAACC
*
42446 AGCAAGACCAGCAAAACC
1 AGCAAGGCCAGCAAAACC
42464 AGCAAGG
1 AGCAAGG
42471 GCACATCCAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
18 21 0.95
19 1 0.05
ACGTcount: A:0.47, C:0.30, G:0.23, T:0.00
Consensus pattern (18 bp):
AGCAAGGCCAGCAAAACC
Left flanking sequence: Indices 41928 -- 42427
ACTCAAGGCAAACTCAAGTATTCGAAAATGAAGCAAGGGATATCTATTCAACCGCTCTTTCCTAC
CATCGCCACCAATCACCCCCCCTCTCCTACCTCCCGTGTTTGTGGCGGTGGCGTATGAGCCGCAC
TTGCGAGGCGAAAAAATCTGACCAAACACCACCCAAACACCCAGGCACCATGAGTCCAGCGCCCA
AGAGCCCCATGAAGCTCACCACAGACCAAAAGGGGCTGTTCACCGAGGAGGAGATCTTGATCGGG
TGCAAAGTGTGGGCGCTCAAGGACGGAGAGCACCGACTAGCCGAGATCCTCCAGGAGCACGTCAA
ACGAGGCAAAAAGGTGTACTATGTCCACTACCAGGAGTACAACAAGCGGTTGGACGAGTGGATCT
CCGCCGACCGCATCGACATGAACCGCCAGCTCATCCTTCCCGAGGTGAAGGTCGAGGAGGACAAA
AAGAAAAAGACGCTGAAGTCAAACCCCCCGGGGAAGACGAGCAAG
Right flanking sequence: Indices 42471 -- 42970
GCACATCCAAGGGCCCGTCGAAGGGACCGTCGAAGGACACCCCCGACGAAGAACTGCCCGCGCTC
GAGGAGGACGAGCTCGATCTCGAAAACTTGAACGTCCAGGGGTTGAAACGCGCAGGCGAAGAAGT
GCTGCGCGAAGAGGAGATCAAGAAGTTGCGCACATCCGGGTCCATGACCCAGAACCACCTGGAGG
TGTCGCGGGTGCGAAATCTCGGGACGATCATTCTCGGAGAACACATTTGCGAGCCGTGGTACTTC
TCGCCGTACCCTATTGAGCTCACAGAATGCGACGAAATTTACATCTGTGACTTCTCGCTTTGTTA
TTTTGGTAGCAAAAAGGAGTACGAGCGGTTCAGAAAGAAGTGTCTGATGACCCACCCGCCCGGGA
ACGAGATCTACCGCGATTCCAAGGTGCTGTTCTGGGAGATCGACGGGCGCAAACAGCGTACGTGG
TGCCGCAACTTGTGTCTTCTTTCCAAACTCTTTTTGGACCACAAA
Found at i:43735 original size:22 final size:22
Alignment explanation
Indices: 43700--43865 Score: 137
Period size: 22 Copynumber: 7.7 Consensus size: 22
43690 GTGGTCTTGG
* *
43700 CATGCTTCAGTGGCCTTTTTGA
1 CATGTTTCAGTGGCCTATTTGA
* * *
43722 CATGTTTTAATGGCCTAATTGA
1 CATGTTTCAGTGGCCTATTTGA
* * *
43744 CATGCTTCAGTGTCTTATTTGA
1 CATGTTTCAGTGGCCTATTTGA
43766 CATGTTTCAGTGGCCTATTTGA
1 CATGTTTCAGTGGCCTATTTGA
* *
43788 CACG-CT-AGT-GCCT-TATTGA
1 CATGTTTCAGTGGCCTAT-TTGA
* * *
43807 CATGCTTCAAT-GCCTTATTTTA
1 CATGTTTCAGTGGCC-TATTTGA
*
43829 CATG-CTCAGTGGCCTATTTGA
1 CATGTTTCAGTGGCCTATTTGA
*
43850 CATGCTTCAGTGGCCT
1 CATGTTTCAGTGGCCT
43866 TGACATGCCT
Statistics
Matches: 113, Mismatches: 24, Indels: 14
0.75 0.16 0.09
Matches are distributed among these distances:
18 1 0.01
19 11 0.10
20 4 0.04
21 20 0.18
22 76 0.67
23 1 0.01
ACGTcount: A:0.19, C:0.22, G:0.20, T:0.39
Consensus pattern (22 bp):
CATGTTTCAGTGGCCTATTTGA
Left flanking sequence: Indices 43200 -- 43699
AGCCGCTCTCGGACTTGGGGTTGTTGTCGTACCGTGCGTTCTGGACCGACACGCTCGTCAAGCTT
CTCGTCGAGCGCAACAACCCGCAGTTGTACAAAAAGAACAACCCCGACGACCTGGACGACGAGGA
GCACCCCAAGGCGCTGTCGCTGGAGATCACCATCGAGGAGATCACGTCCATCACCTGCATGACCA
CCACCGACATTCTCCACACCCTCACCACGCTCCAGATCTTGCGCTACTACAAGGGCCAGCACATC
ATCGTCATCACCGACCAGATCATGGCGATTTACGAGAAGCTCATCAAGAAGATCAAGGAGAAGAA
GAAACACGAGTTGGACCACCGCAAGCTCAGCTGGACGCCGCCGTTGTTCACGGCCAACCAGTTGC
GCTTCGGGTGGTAATTAATGATAACGATCTAATAGACATAATAGTATTTGTGACACGATTAGGTG
TGGTTTAGTACGAGCCACAATATTGACATGCTTGAGTGGTCTTGG
Right flanking sequence: Indices 43866 -- 44365
TGACATGCCTTAGTGGCATTTGACATTCCCTACTTGACACGCTGCATCACCTATCAAGTCATGCA
AGCGAAGGTTGGATATGCAACACGATAAGGCAGCTGCCGCGGAGCGCCGGTGCTGAGCCCCCGAT
CGGCAGACACATCACCAAAGGGTCGCCGGGTATCGTCGATACGCCAACCGAGGGTTCGTGTTCTA
TTTTTTCGATTGTGTGCATATTTGCAGCCGTTTGCAGCCGTGCCATGACACAAACAGCCTACGCC
AGTTTACTGTCTGTGTTATTGTCTCATTTAAATCAAAAGTCCTGGAAGTACTCCTGGTACGGGTC
GTCCCCACCAGCGCCGTAGTCCAACTGCTCCTCGGGGTAGTGGTCAAACAACGACGAGTCACCGA
CACCAGCGATGATGGGCGGCTCGTAGGGGGTCTCGATGTCCTTGGCAAGCAACTTTTCCCACACC
ACCTCGGCAAACCACGGGTGGTTGCGGATGTCAGCAGGCCCGTTC
Found at i:43751 original size:44 final size:42
Alignment explanation
Indices: 43700--43865 Score: 165
Period size: 44 Copynumber: 3.9 Consensus size: 42
43690 GTGGTCTTGG
* *
43700 CATGCTTCAGTGGCCTTTTTGACATGTTTTAATGGCCTAATTGA
1 CATGC-TCAGT-GCCTTTTTGACATGTTTCAATGGCCTATTTGA
* *
43744 CATGCTTCAGTGTCTTATTTGACATGTTTCAGTGGCCTATTTGA
1 CATGC-TCAGTGCCTT-TTTGACATGTTTCAATGGCCTATTTGA
* * * *
43788 CACGCT-AGTGCCTTATTGACATGCTTCAAT-GCCTTATTTTA
1 CATGCTCAGTGCCTTTTTGACATGTTTCAATGGCC-TATTTGA
* * *
43829 CATGCTCAGTGGCCTATTTGACATGCTTCAGTGGCCT
1 CATGCTCAGT-GCCTTTTTGACATGTTTCAATGGCCT
43866 TGACATGCCT
Statistics
Matches: 103, Mismatches: 14, Indels: 11
0.80 0.11 0.09
Matches are distributed among these distances:
40 3 0.03
41 24 0.23
42 10 0.10
43 24 0.23
44 42 0.41
ACGTcount: A:0.19, C:0.22, G:0.20, T:0.39
Consensus pattern (42 bp):
CATGCTCAGTGCCTTTTTGACATGTTTCAATGGCCTATTTGA
Left flanking sequence: Indices 43200 -- 43699
AGCCGCTCTCGGACTTGGGGTTGTTGTCGTACCGTGCGTTCTGGACCGACACGCTCGTCAAGCTT
CTCGTCGAGCGCAACAACCCGCAGTTGTACAAAAAGAACAACCCCGACGACCTGGACGACGAGGA
GCACCCCAAGGCGCTGTCGCTGGAGATCACCATCGAGGAGATCACGTCCATCACCTGCATGACCA
CCACCGACATTCTCCACACCCTCACCACGCTCCAGATCTTGCGCTACTACAAGGGCCAGCACATC
ATCGTCATCACCGACCAGATCATGGCGATTTACGAGAAGCTCATCAAGAAGATCAAGGAGAAGAA
GAAACACGAGTTGGACCACCGCAAGCTCAGCTGGACGCCGCCGTTGTTCACGGCCAACCAGTTGC
GCTTCGGGTGGTAATTAATGATAACGATCTAATAGACATAATAGTATTTGTGACACGATTAGGTG
TGGTTTAGTACGAGCCACAATATTGACATGCTTGAGTGGTCTTGG
Right flanking sequence: Indices 43866 -- 44365
TGACATGCCTTAGTGGCATTTGACATTCCCTACTTGACACGCTGCATCACCTATCAAGTCATGCA
AGCGAAGGTTGGATATGCAACACGATAAGGCAGCTGCCGCGGAGCGCCGGTGCTGAGCCCCCGAT
CGGCAGACACATCACCAAAGGGTCGCCGGGTATCGTCGATACGCCAACCGAGGGTTCGTGTTCTA
TTTTTTCGATTGTGTGCATATTTGCAGCCGTTTGCAGCCGTGCCATGACACAAACAGCCTACGCC
AGTTTACTGTCTGTGTTATTGTCTCATTTAAATCAAAAGTCCTGGAAGTACTCCTGGTACGGGTC
GTCCCCACCAGCGCCGTAGTCCAACTGCTCCTCGGGGTAGTGGTCAAACAACGACGAGTCACCGA
CACCAGCGATGATGGGCGGCTCGTAGGGGGTCTCGATGTCCTTGGCAAGCAACTTTTCCCACACC
ACCTCGGCAAACCACGGGTGGTTGCGGATGTCAGCAGGCCCGTTC
Found at i:43807 original size:63 final size:62
Alignment explanation
Indices: 43734--43851 Score: 182
Period size: 63 Copynumber: 1.9 Consensus size: 62
43724 TGTTTTAATG
* * *
43734 GCCTAATTGACATGCTTCAGTGTCTTATTTGACATGTTTCAGTGGCCTATTTGACACGCTAGT
1 GCCTAATTGACATGCTTCAATGCCTTATTTGACATG-CTCAGTGGCCTATTTGACACGCTAGT
* *
43797 GCCTTATTGACATGCTTCAATGCCTTATTTTACATGCTCAGTGGCCTATTTGACA
1 GCCTAATTGACATGCTTCAATGCCTTATTTGACATGCTCAGTGGCCTATTTGACA
43852 TGCTTCAGTG
Statistics
Matches: 50, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
62 18 0.36
63 32 0.64
ACGTcount: A:0.21, C:0.22, G:0.19, T:0.38
Consensus pattern (62 bp):
GCCTAATTGACATGCTTCAATGCCTTATTTGACATGCTCAGTGGCCTATTTGACACGCTAGT
Left flanking sequence: Indices 43234 -- 43733
TGCGTTCTGGACCGACACGCTCGTCAAGCTTCTCGTCGAGCGCAACAACCCGCAGTTGTACAAAA
AGAACAACCCCGACGACCTGGACGACGAGGAGCACCCCAAGGCGCTGTCGCTGGAGATCACCATC
GAGGAGATCACGTCCATCACCTGCATGACCACCACCGACATTCTCCACACCCTCACCACGCTCCA
GATCTTGCGCTACTACAAGGGCCAGCACATCATCGTCATCACCGACCAGATCATGGCGATTTACG
AGAAGCTCATCAAGAAGATCAAGGAGAAGAAGAAACACGAGTTGGACCACCGCAAGCTCAGCTGG
ACGCCGCCGTTGTTCACGGCCAACCAGTTGCGCTTCGGGTGGTAATTAATGATAACGATCTAATA
GACATAATAGTATTTGTGACACGATTAGGTGTGGTTTAGTACGAGCCACAATATTGACATGCTTG
AGTGGTCTTGGCATGCTTCAGTGGCCTTTTTGACATGTTTTAATG
Right flanking sequence: Indices 43852 -- 44351
TGCTTCAGTGGCCTTGACATGCCTTAGTGGCATTTGACATTCCCTACTTGACACGCTGCATCACC
TATCAAGTCATGCAAGCGAAGGTTGGATATGCAACACGATAAGGCAGCTGCCGCGGAGCGCCGGT
GCTGAGCCCCCGATCGGCAGACACATCACCAAAGGGTCGCCGGGTATCGTCGATACGCCAACCGA
GGGTTCGTGTTCTATTTTTTCGATTGTGTGCATATTTGCAGCCGTTTGCAGCCGTGCCATGACAC
AAACAGCCTACGCCAGTTTACTGTCTGTGTTATTGTCTCATTTAAATCAAAAGTCCTGGAAGTAC
TCCTGGTACGGGTCGTCCCCACCAGCGCCGTAGTCCAACTGCTCCTCGGGGTAGTGGTCAAACAA
CGACGAGTCACCGACACCAGCGATGATGGGCGGCTCGTAGGGGGTCTCGATGTCCTTGGCAAGCA
ACTTTTCCCACACCACCTCGGCAAACCACGGGTGGTTGCGGATGT
Found at i:43870 original size:19 final size:20
Alignment explanation
Indices: 43677--43891 Score: 113
Period size: 22 Copynumber: 10.3 Consensus size: 20
43667 AGCCACAATA
* *
43677 TTGACATGCTTGAGTGGTC-
1 TTGACATGCTTCAGTGGCCT
*
43696 TTGGCATGCTTCAGTGGCCTTT
1 TTGACATGCTTCAGTGGCC--T
* * *
43718 TTGACATGTTTTAATGGCCT
1 TTGACATGCTTCAGTGGCCT
* *
43738 AATTGACATGCTTCAGTGTCTTAT
1 --TTGACATGCTTCAGTGGC--CT
*
43762 TTGACATGTTTCAGTGGCCTAT
1 TTGACATGCTTCAGTGGCC--T
*
43784 TTGACACGC-T-AGT-GCCTT
1 TTGACATGCTTCAGTGGCC-T
*
43802 ATTGACATGCTTCAAT-GCCTTAT
1 -TTGACATGCTTCAGTGGCC---T
*
43825 TTTACATGC-TCAGTGGCCTAT
1 TTGACATGCTTCAGTGGCC--T
43846 TTGACATGCTTCAGTGGCC-
1 TTGACATGCTTCAGTGGCCT
*
43865 TTGACATGCCTT-AGTGGCAT
1 TTGACATG-CTTCAGTGGCCT
43885 TTGACAT
1 TTGACAT
43892 TCCCTACTTG
Statistics
Matches: 153, Mismatches: 25, Indels: 35
0.72 0.12 0.16
Matches are distributed among these distances:
18 1 0.01
19 41 0.27
20 15 0.10
21 21 0.14
22 73 0.48
23 1 0.01
24 1 0.01
ACGTcount: A:0.19, C:0.20, G:0.22, T:0.39
Consensus pattern (20 bp):
TTGACATGCTTCAGTGGCCT
Left flanking sequence: Indices 43177 -- 43676
GCACAAGATCGGGCTGCCGGAGAAGCCGCTCTCGGACTTGGGGTTGTTGTCGTACCGTGCGTTCT
GGACCGACACGCTCGTCAAGCTTCTCGTCGAGCGCAACAACCCGCAGTTGTACAAAAAGAACAAC
CCCGACGACCTGGACGACGAGGAGCACCCCAAGGCGCTGTCGCTGGAGATCACCATCGAGGAGAT
CACGTCCATCACCTGCATGACCACCACCGACATTCTCCACACCCTCACCACGCTCCAGATCTTGC
GCTACTACAAGGGCCAGCACATCATCGTCATCACCGACCAGATCATGGCGATTTACGAGAAGCTC
ATCAAGAAGATCAAGGAGAAGAAGAAACACGAGTTGGACCACCGCAAGCTCAGCTGGACGCCGCC
GTTGTTCACGGCCAACCAGTTGCGCTTCGGGTGGTAATTAATGATAACGATCTAATAGACATAAT
AGTATTTGTGACACGATTAGGTGTGGTTTAGTACGAGCCACAATA
Right flanking sequence: Indices 43892 -- 44391
TCCCTACTTGACACGCTGCATCACCTATCAAGTCATGCAAGCGAAGGTTGGATATGCAACACGAT
AAGGCAGCTGCCGCGGAGCGCCGGTGCTGAGCCCCCGATCGGCAGACACATCACCAAAGGGTCGC
CGGGTATCGTCGATACGCCAACCGAGGGTTCGTGTTCTATTTTTTCGATTGTGTGCATATTTGCA
GCCGTTTGCAGCCGTGCCATGACACAAACAGCCTACGCCAGTTTACTGTCTGTGTTATTGTCTCA
TTTAAATCAAAAGTCCTGGAAGTACTCCTGGTACGGGTCGTCCCCACCAGCGCCGTAGTCCAACT
GCTCCTCGGGGTAGTGGTCAAACAACGACGAGTCACCGACACCAGCGATGATGGGCGGCTCGTAG
GGGGTCTCGATGTCCTTGGCAAGCAACTTTTCCCACACCACCTCGGCAAACCACGGGTGGTTGCG
GATGTCAGCAGGCCCGTTCTGCAAGTTGCCCAACCGCCGGGTCAA
Found at i:44987 original size:18 final size:18
Alignment explanation
Indices: 44964--45005 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
44954 TTGGTGTGCT
*
44964 CCACCTGCTTCATCTTCA
1 CCACCTGCTGCATCTTCA
*
44982 CCACCTGCTGCTTCTTCA
1 CCACCTGCTGCATCTTCA
*
45000 ACACCT
1 CCACCT
45006 TGATGGCGTA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.17, C:0.45, G:0.07, T:0.31
Consensus pattern (18 bp):
CCACCTGCTGCATCTTCA
Left flanking sequence: Indices 44464 -- 44963
CGAAAGGATCTTTTCGTAGGTCTTCATCGGCGTCAGGTCGTAGAACGGGGTGTACCCGGCCAACA
TCTCAAAGATAAGCACCCCCAACAGCCACCAGTCGACACTCTTGTTGTAGGGCTTGGTGGTGATC
ACCTCCGGGGCAATGTAGTCGGGGGTCCCGCACAACGTCCACGTGACCGTGCTCACCTCCTTGGC
AAAACCAAAGTCGGTGATTTTGATGTGCCCGTTGCGGTCAAGCAAAATGTTTTCGGGCTTCAAGT
CGCGGTAGATGATGTTGTGCGAGTGCAAGTACTCCAACGCAAGCGTCACCTCGGCAGCATAGAAC
TTGGCCACCGGGTTGGGGAACCGCTGCAGCTTGCGCAAAAGCGAAAACAACTCGCCTCCCTCGAT
GTAGTCCATCACCATAAACAAGTTTTTCGCGTCCTGGAAGGTGCCCCACATCCGGATGAGAAACG
GGTGCTCCACCAACTTCAACATCCGCCGCTCGTCGTTGGTGTGCT
Right flanking sequence: Indices 45006 -- 45505
TGATGGCGTAGTAGCGGCCATTGTGCACACTGCGCACCAAGTGCACCCGGCCAAACAGCCCCGTG
CCCAAGGTCCGCATGATGGCAAAGTCGGTCAACAGGTACTTGCCCTTGGACACCGTCAGCCGCTG
GGGCAACAACAGAGCCTGGATGGCGTCCTGGGCCGCCAGCGTGGCCAGTTGTGCCGCTACGTGGC
CCAGGGGCACGGTGGCAGCGTCCGTCAGTGCCTGGGTGGTGGCTGCACCCGCTTCGGGGGTAAAC
CCGGTTCCCTGGGACACCAAGTGGGTTTGTTGCTGCTGCGGCGGCGACTGCTGCGGGTGGGCAGC
CTGCGGCTGCTGGTAGTACGCCATGTCCTTCAGTTGTTGGTTTTGCGGCGGGTTCTTAGTGATGT
TTGTGAGCTTTTTCAACAAATTTGTCATGGTAGCCTCTCGAGGCGAGAGAGCAAACTAACGCGAG
GGGAACAGGAGGTAGCGAGGGCTCAGGGTCAACCAATTGACGGGA
Found at i:46202 original size:16 final size:16
Alignment explanation
Indices: 46178--46253 Score: 86
Period size: 16 Copynumber: 4.9 Consensus size: 16
46168 GCTCGCAATG
* *
46178 GGAGGTGGAGATGTCC
1 GGAGATGGAAATGTCC
* *
46194 GGAGATGGAGATGTAC
1 GGAGATGGAAATGTCC
46210 GGAGATGGAAATG-CAC
1 GGAGATGGAAATGTC-C
46226 GGAGATGGAAATG--C
1 GGAGATGGAAATGTCC
46240 GGAGATGGAAATGT
1 GGAGATGGAAATGT
46254 AGGTGGAGAT
Statistics
Matches: 54, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
14 14 0.26
16 40 0.74
ACGTcount: A:0.32, C:0.08, G:0.43, T:0.17
Consensus pattern (16 bp):
GGAGATGGAAATGTCC
Left flanking sequence: Indices 45678 -- 46177
TTCGCTAAGCGTGGGTGGCGCAATTGATGTGGGTTGCGGTGGGAGCAAGTGGTGGATTTGTGGGG
GTGGTGTGGGGTGGCGGATGTGTGTAATTTAGGTAGGTTTTGGTGGGGTGGAGGATGGAAACCGG
TAATTGGCCGGTGGCGTGGTGGCTTGGGCTCGTTAGGCAGACACCACACGCGGTGACACTTCAGC
CAACGGTTGCGAACTGACGTGGGCCCGCATGATAATAGAAGCAACAGAGGGGCTTGGGTGGGTTA
AAGTTGGCCCCAGGTGGGGTGAGACCAGGAGAGTTTGGTTTTGGGGGGTAAGGTTACGGGTGGAT
TGTAAAGGTTGTAAATGCTTCGAAAGTGAGTGGGTTACAGGTGTGCTTGTGTCACCTGGGAATGT
TCTGTGGCGTTAGGGAAGCATTTTTACGAGACCAAAGAGCGGTGGTGAGTGGGAAGGTGCCATTG
AGACGGTCCAGCCGTGGCTGGGTGACAGCACCAGGGCTCGCAATG
Right flanking sequence: Indices 46254 -- 46753
AGGTGGAGATGTGGAGATGCTACGTGGAGGTTTGCGGAATGAGTCGTCACTAGTACAGAATGGTA
CTGGGTACGCAAAAAGGGGACGCTAGGCTGCATGCCCAACACAGTATACTACACTCATAGTAACA
AACGTACCACCTACGATCGCAACACCCAAACACTCACAAAATGCCAGCGAGCCTACAGTCTTCGG
CCCTACAGTCTCCGTAGCGGATTTACCGGCTCCACCTGTCCATGCCCTCTCACTCTACAGCAACA
CTGCTCCCCGTAGGATACCACCTCCTATACCAGCAACCGCCTCTACGTCCCGGTTCAACGGCGCA
TCGCATTATACACATCGCATCATCTACCCCAGGTTACTCGTGTCGAGCCACCGCACTCAGCCGCC
TCACTCAGCACGGCTACCACCCAATCGCCCAACCCTAGTCCCTATCGCCACATCCCGTCACCCGA
GCTTTTTGCTCGCTCCCCTGGGCTCACACCCCTCACAGCCTCGGG
Found at i:46264 original size:32 final size:31
Alignment explanation
Indices: 46193--46252 Score: 95
Period size: 30 Copynumber: 1.9 Consensus size: 31
46183 TGGAGATGTC
*
46193 CGGAGATGGAGATGTACGGAGATGGAAATGCA
1 CGGAGATGGAAATG-ACGGAGATGGAAATGCA
46225 CGGAGATGGAAATG-CGGAGATGGAAATG
1 CGGAGATGGAAATGACGGAGATGGAAATG
46253 TAGGTGGAGA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
30 14 0.52
32 13 0.48
ACGTcount: A:0.35, C:0.08, G:0.42, T:0.15
Consensus pattern (31 bp):
CGGAGATGGAAATGACGGAGATGGAAATGCA
Left flanking sequence: Indices 45693 -- 46192
TGGCGCAATTGATGTGGGTTGCGGTGGGAGCAAGTGGTGGATTTGTGGGGGTGGTGTGGGGTGGC
GGATGTGTGTAATTTAGGTAGGTTTTGGTGGGGTGGAGGATGGAAACCGGTAATTGGCCGGTGGC
GTGGTGGCTTGGGCTCGTTAGGCAGACACCACACGCGGTGACACTTCAGCCAACGGTTGCGAACT
GACGTGGGCCCGCATGATAATAGAAGCAACAGAGGGGCTTGGGTGGGTTAAAGTTGGCCCCAGGT
GGGGTGAGACCAGGAGAGTTTGGTTTTGGGGGGTAAGGTTACGGGTGGATTGTAAAGGTTGTAAA
TGCTTCGAAAGTGAGTGGGTTACAGGTGTGCTTGTGTCACCTGGGAATGTTCTGTGGCGTTAGGG
AAGCATTTTTACGAGACCAAAGAGCGGTGGTGAGTGGGAAGGTGCCATTGAGACGGTCCAGCCGT
GGCTGGGTGACAGCACCAGGGCTCGCAATGGGAGGTGGAGATGTC
Right flanking sequence: Indices 46253 -- 46752
TAGGTGGAGATGTGGAGATGCTACGTGGAGGTTTGCGGAATGAGTCGTCACTAGTACAGAATGGT
ACTGGGTACGCAAAAAGGGGACGCTAGGCTGCATGCCCAACACAGTATACTACACTCATAGTAAC
AAACGTACCACCTACGATCGCAACACCCAAACACTCACAAAATGCCAGCGAGCCTACAGTCTTCG
GCCCTACAGTCTCCGTAGCGGATTTACCGGCTCCACCTGTCCATGCCCTCTCACTCTACAGCAAC
ACTGCTCCCCGTAGGATACCACCTCCTATACCAGCAACCGCCTCTACGTCCCGGTTCAACGGCGC
ATCGCATTATACACATCGCATCATCTACCCCAGGTTACTCGTGTCGAGCCACCGCACTCAGCCGC
CTCACTCAGCACGGCTACCACCCAATCGCCCAACCCTAGTCCCTATCGCCACATCCCGTCACCCG
AGCTTTTTGCTCGCTCCCCTGGGCTCACACCCCTCACAGCCTCGG
Found at i:46269 original size:26 final size:29
Alignment explanation
Indices: 46195--46272 Score: 81
Period size: 26 Copynumber: 2.7 Consensus size: 29
46185 GAGATGTCCG
46195 GAGATGGAGATGTACGGAGATGGAAATGCAC
1 GAGATGGAGATGT--GGAGATGGAAATGCAC
* * *
46226 GGAGATGGAAATGCGGAGATGGAAATGTA-
1 -GAGATGGAGATGTGGAGATGGAAATGCAC
46255 G-G-TGGAGATGTGGAGATG
1 GAGATGGAGATGTGGAGATG
46273 CTACGTGGAG
Statistics
Matches: 41, Mismatches: 5, Indels: 6
0.79 0.10 0.12
Matches are distributed among these distances:
26 14 0.34
27 1 0.02
28 1 0.02
30 14 0.34
32 11 0.27
ACGTcount: A:0.33, C:0.05, G:0.44, T:0.18
Consensus pattern (29 bp):
GAGATGGAGATGTGGAGATGGAAATGCAC
Left flanking sequence: Indices 45695 -- 46194
GCGCAATTGATGTGGGTTGCGGTGGGAGCAAGTGGTGGATTTGTGGGGGTGGTGTGGGGTGGCGG
ATGTGTGTAATTTAGGTAGGTTTTGGTGGGGTGGAGGATGGAAACCGGTAATTGGCCGGTGGCGT
GGTGGCTTGGGCTCGTTAGGCAGACACCACACGCGGTGACACTTCAGCCAACGGTTGCGAACTGA
CGTGGGCCCGCATGATAATAGAAGCAACAGAGGGGCTTGGGTGGGTTAAAGTTGGCCCCAGGTGG
GGTGAGACCAGGAGAGTTTGGTTTTGGGGGGTAAGGTTACGGGTGGATTGTAAAGGTTGTAAATG
CTTCGAAAGTGAGTGGGTTACAGGTGTGCTTGTGTCACCTGGGAATGTTCTGTGGCGTTAGGGAA
GCATTTTTACGAGACCAAAGAGCGGTGGTGAGTGGGAAGGTGCCATTGAGACGGTCCAGCCGTGG
CTGGGTGACAGCACCAGGGCTCGCAATGGGAGGTGGAGATGTCCG
Right flanking sequence: Indices 46273 -- 46772
CTACGTGGAGGTTTGCGGAATGAGTCGTCACTAGTACAGAATGGTACTGGGTACGCAAAAAGGGG
ACGCTAGGCTGCATGCCCAACACAGTATACTACACTCATAGTAACAAACGTACCACCTACGATCG
CAACACCCAAACACTCACAAAATGCCAGCGAGCCTACAGTCTTCGGCCCTACAGTCTCCGTAGCG
GATTTACCGGCTCCACCTGTCCATGCCCTCTCACTCTACAGCAACACTGCTCCCCGTAGGATACC
ACCTCCTATACCAGCAACCGCCTCTACGTCCCGGTTCAACGGCGCATCGCATTATACACATCGCA
TCATCTACCCCAGGTTACTCGTGTCGAGCCACCGCACTCAGCCGCCTCACTCAGCACGGCTACCA
CCCAATCGCCCAACCCTAGTCCCTATCGCCACATCCCGTCACCCGAGCTTTTTGCTCGCTCCCCT
GGGCTCACACCCCTCACAGCCTCGGGCATCCGGAGCCGACATATA
Found at i:49443 original size:19 final size:19
Alignment explanation
Indices: 49421--49472 Score: 95
Period size: 19 Copynumber: 2.7 Consensus size: 19
49411 AGAGGTTGTA
49421 CTTTCGCGTAGGCTCCCTT
1 CTTTCGCGTAGGCTCCCTT
*
49440 CTTTCGCGTAGGGTCCCTT
1 CTTTCGCGTAGGCTCCCTT
49459 CTTTCGCGTAGGCT
1 CTTTCGCGTAGGCT
49473 GCTTCTATTT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 31 1.00
ACGTcount: A:0.06, C:0.33, G:0.25, T:0.37
Consensus pattern (19 bp):
CTTTCGCGTAGGCTCCCTT
Left flanking sequence: Indices 48921 -- 49420
GCCCGATGACGTGCCTGGAGGCGAGGAGATCGACGGGAAGCGGTACAAGTTCATGAACAACCACT
GGTTGATCACGGCGTTGGCGGCGCTTATCTGGCTCTTTATTCTGGTGTTGAACGTGTACGCCATC
GTCGACATGGCCCGGAACGGGGTTGCGGGCTAGGACATTATGCATTGAGGACCACCTCTCGAGAG
GTCGGACAGTCTAACTACATAGGAATATATTACAAGTGAGAGTTAACGGGGGATAGGGATAACGG
ATGACATGAGGCGATACCTTATGGGAGCCAATCTCCACGGGTATGTATTTTTCTGGTAATTCTAT
CAGACTTACGCGTAGTGGCGTACGGATACCAGGCAGATCGATTGATTCGACATGACACAAAATCA
AATCGATCGGGGACCTACCTATACCTTCATCTGGATCTCACCGGCACGTGTACGTCATCCAGTGT
GTGTCTCTGCAAACTTGACAAAATGCCGTCAGTGTAGAGGTTGTA
Right flanking sequence: Indices 49473 -- 49972
GCTTCTATTTTTAGACTGCTGGCTACACCGTTTGCCTGCCAAGTCGTGCCAAGAGACGTACTCGT
AAACTCGTTCCAGAAAGAGTCTAGGCCTACCCTTGCTTATTGTCGTACGTCTAACGTTTTCACAT
GGGCTTGGCACAGACACTGCCAATTACCCAATACAATTTCCAATATGCAACCAACCACTCCAAAC
CACTTCCCCTCTGAAAGATCTACTCTCTATTCAATAAATACTTCTAGTTCTCAAGGAAATCCTTG
ATGTTGGCGCCATCGGCCTCCACGATCGCCTGGATCTTGCGGTGGATGTCCGAGTAGTCGTTGAA
CTCTGTGTAGGGAATCCCCTCGCGCTTGGAGTAGATGATCAAGTCCTTGCCGTGCTTGGCAAGCA
ACAAGTTGGTCTCCTTGGCCGCCAGGATGTCGGAAACACCGTCGCCAGCGTAGAACAACAACGTG
CTCTTGTCCACCTGGTTGCGCGCCAAGTACTCCCGGATCAGCTTC
Found at i:50932 original size:7 final size:7
Alignment explanation
Indices: 50920--50968 Score: 62
Period size: 7 Copynumber: 6.9 Consensus size: 7
50910 TTCTGTGTAC
50920 CTTCTTT
1 CTTCTTT
50927 CTTCTTT
1 CTTCTTT
50934 CTTCTTT
1 CTTCTTT
*
50941 CTTCCTT
1 CTTCTTT
*
50948 CTTCCTT
1 CTTCTTT
*
50955 CTTCCTT
1 CTTCTTT
50962 CTCTCTT
1 CT-TCTT
50969 CGTCTCTTCA
Statistics
Matches: 39, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
7 36 0.92
8 3 0.08
ACGTcount: A:0.00, C:0.37, G:0.00, T:0.63
Consensus pattern (7 bp):
CTTCTTT
Left flanking sequence: Indices 50420 -- 50919
GGCTGTGTAGACGTAGTCATAGTGGTGCTGAACGTTGGGAAAAGTTGGGTAAACCGGTTTGGAAA
CTGAAAAGTTGGCCATGCCTGCTGACGTCATCGGGCCCACCGGGCCCGCCAGGTTTGGCGGACTA
CCCGGTCAGGTGAGAGTCAGGTGTCCACGGGTGCGGCGACAGAGGCGGCTACGTTGAGCCACCGC
CAGGGCCACTACCGTGGGGCGCCCGGGGTCGGCTCGGCCACATGCAGGCGGCCGGCAGTTTCCGC
TTGCTTGCGGTGACGTGGCCGCCAGTTTTGTGGGAGCGTGCGGTTGCTTATGTATAGGGGGTGAA
AAATACCCGCCTTGGGACAAACGTGTTGATGCGGTGTCACAAGTCAAAGCGTGGTTTAGTGTTTT
GACTTTGGTAGTTTGTGTCCATTTCTTCAATCATTTGTGCTATTTCTATTGCTTACCTTTTCCTT
CGCTTTCAACCTTCTCTTCCACTCTTCTTTTACTCTTCTGTGTAC
Right flanking sequence: Indices 50969 -- 51468
CGTCTCTTCATTGTCTGTCTTTCTCAAGTCCACTGTCCCACCTACCGCCTCAGGCGTTTCAGCCA
CACCGTCAGGGCTCGAACACGCTTAGCCACTGGATCTCGAATCACAGGTAATCGCACGTTAGATT
GCTTTGATCTCGCCAACAAAGTACGACCCCTCGCGCCTACCCCAGCAATCCACCCCGGACCTCGT
AGCTGCTGGATGCTGCCTCCACCCCACTGACAGCAGCGTGCCGTCGTAAACCACCGCCCGCCCCT
GGACCCGCAGCACGTGTATGACATCATCGTGAATAGATCATCGAAACCTTAGTACGATCCCAGGC
AGCCAGGCACAATGCCGGCATAAACCTTGCTGCCCCAGCAAGCCAGCCCGCCCTACACGTTCAGT
AGCCCGTAAAAATCCACCCCTACACCCGTTCCTACGCCCATCGGCTCGGCCGGCCCTTTTTGCCG
CCCGGCCGCGACCGCGTTCGTTGGCATATTGTTGAGGCAACCGAA
Found at i:50937 original size:14 final size:14
Alignment explanation
Indices: 50920--50968 Score: 71
Period size: 14 Copynumber: 3.4 Consensus size: 14
50910 TTCTGTGTAC
*
50920 CTTCTTTCTTCTTT
1 CTTCTTTCTTCCTT
50934 CTTCTTTCTTCCTT
1 CTTCTTTCTTCCTT
*
50948 CTTCCTTCTTCCTT
1 CTTCTTTCTTCCTT
50962 CTCTCTT
1 CT-TCTT
50969 CGTCTCTTCA
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
14 28 0.90
15 3 0.10
ACGTcount: A:0.00, C:0.37, G:0.00, T:0.63
Consensus pattern (14 bp):
CTTCTTTCTTCCTT
Left flanking sequence: Indices 50420 -- 50919
GGCTGTGTAGACGTAGTCATAGTGGTGCTGAACGTTGGGAAAAGTTGGGTAAACCGGTTTGGAAA
CTGAAAAGTTGGCCATGCCTGCTGACGTCATCGGGCCCACCGGGCCCGCCAGGTTTGGCGGACTA
CCCGGTCAGGTGAGAGTCAGGTGTCCACGGGTGCGGCGACAGAGGCGGCTACGTTGAGCCACCGC
CAGGGCCACTACCGTGGGGCGCCCGGGGTCGGCTCGGCCACATGCAGGCGGCCGGCAGTTTCCGC
TTGCTTGCGGTGACGTGGCCGCCAGTTTTGTGGGAGCGTGCGGTTGCTTATGTATAGGGGGTGAA
AAATACCCGCCTTGGGACAAACGTGTTGATGCGGTGTCACAAGTCAAAGCGTGGTTTAGTGTTTT
GACTTTGGTAGTTTGTGTCCATTTCTTCAATCATTTGTGCTATTTCTATTGCTTACCTTTTCCTT
CGCTTTCAACCTTCTCTTCCACTCTTCTTTTACTCTTCTGTGTAC
Right flanking sequence: Indices 50969 -- 51468
CGTCTCTTCATTGTCTGTCTTTCTCAAGTCCACTGTCCCACCTACCGCCTCAGGCGTTTCAGCCA
CACCGTCAGGGCTCGAACACGCTTAGCCACTGGATCTCGAATCACAGGTAATCGCACGTTAGATT
GCTTTGATCTCGCCAACAAAGTACGACCCCTCGCGCCTACCCCAGCAATCCACCCCGGACCTCGT
AGCTGCTGGATGCTGCCTCCACCCCACTGACAGCAGCGTGCCGTCGTAAACCACCGCCCGCCCCT
GGACCCGCAGCACGTGTATGACATCATCGTGAATAGATCATCGAAACCTTAGTACGATCCCAGGC
AGCCAGGCACAATGCCGGCATAAACCTTGCTGCCCCAGCAAGCCAGCCCGCCCTACACGTTCAGT
AGCCCGTAAAAATCCACCCCTACACCCGTTCCTACGCCCATCGGCTCGGCCGGCCCTTTTTGCCG
CCCGGCCGCGACCGCGTTCGTTGGCATATTGTTGAGGCAACCGAA
Found at i:67730 original size:15 final size:15
Alignment explanation
Indices: 67710--67887 Score: 219
Period size: 15 Copynumber: 12.2 Consensus size: 15
67700 AAGAGTGGTG
67710 ATCAGAGAATAGGCC
1 ATCAGAGAATAGGCC
67725 ATCAGAGAATAGGCC
1 ATCAGAGAATAGGCC
67740 ATC--AGAATAGGCC
1 ATCAGAGAATAGGCC
67753 ATC--AG---A-GCC
1 ATCAGAGAATAGGCC
67762 ATCAGAGAATAGGCC
1 ATCAGAGAATAGGCC
* *
67777 ATCAAAGAAGAGGCC
1 ATCAGAGAATAGGCC
67792 ATCAGAGAATAGGCC
1 ATCAGAGAATAGGCC
*
67807 ATCAGAGCCATCAGAGCC
1 ATCAGAG-AAT-AG-GCC
67825 ATCAGAGAATAGGCC
1 ATCAGAGAATAGGCC
* *
67840 ATCAAAGAAGAGGCC
1 ATCAGAGAATAGGCC
67855 ATCAGAGAATAGGCC
1 ATCAGAGAATAGGCC
*
67870 ATCAGAGAATAAGCC
1 ATCAGAGAATAGGCC
67885 ATC
1 ATC
67888 TGAAGAATTA
Statistics
Matches: 143, Mismatches: 11, Indels: 18
0.83 0.06 0.10
Matches are distributed among these distances:
9 6 0.04
10 1 0.01
11 2 0.01
13 15 0.10
14 1 0.01
15 100 0.70
16 4 0.03
17 4 0.03
18 10 0.07
ACGTcount: A:0.40, C:0.22, G:0.25, T:0.12
Consensus pattern (15 bp):
ATCAGAGAATAGGCC
Left flanking sequence: Indices 67210 -- 67709
CCAGGTGGACAGCCACAACATCGTCGAGCAGAACGACGCCGACAAGCCGTTCGACAAGGTGTTTG
GCGACATTTCCGAGAAGATCTACGACGAGGTCAACGCCGAGGTGAACAAGTACGTGCCCAAGAAG
TGGCGCCAGGCGGCGGAGGACTTGGTGACGCCCAAGGAGTACGAGTTCACCGAGCGGGTGCAGCC
CGAGACCGAGCGCGAGGCCGCGGTGAACACCATCATCAACTTGATCCCCTATCTCCCGTTGTCGC
GGTTCACCGCGTGGCTCGACAAGATCTACGGGTTGATTGCGGTGCTGAGCCCCAGCGAGCGGTTG
TACTTGCTGCGGTCGTTGTGGGTGGTGATTGGGATGTCGCTTGACCTCAACCGGTGCGAGTTGGC
GTACCCGTGGTGGTACGAGAAGGTGCGGATGCCCGAGAACAAGCCGTTCATGTCGAAGTTTTAGA
GTCTATAGAGAATGATGAAGTAATGTGTAGTAGCTAAGAGTGGTG
Right flanking sequence: Indices 67888 -- 68387
TGAAGAATTAAATTGAGCCATGTTCAATAAGCAGGTTCTCTGGGCTTTTGGCAGCGTAGTTCGGA
GAGCCAGATATGAAGTGATCCGGGTATAACCACTCAACGCGTTTACCAATGGAGCTTTTGAGCTA
GTTTCGTGACTATGTCCAACCGTAGAAGCCCATCCTTCTTCAAACGTGGACTCTCCACCTATTAC
TACCACACCACTACGTGTATGCAATTCGACTATATATATGCTAGATTGTCCAAGTACAACTTCTT
CTCGAGGTTCCGCCGACACGTCTGGGTGTCGCGGTGGCGCTTCAACGCGTCCTTGCGGGCAAAAC
CCTTGCCACACAAGTCGCAGATATTAGGTGGTTGCACCAAGTGCTGTTTTTCGTGGCGCTTCAAG
TCCAGCAGGCGCCTGAACCCCTGCGAGCACTTGGGACACTGGAACTTGCGCTCCTCGTCGTAAGC
GTCGTAGTCGTTCGACAGCGGAGGCAGCTGGGCCACCGGAGGGGG
Found at i:67764 original size:9 final size:9
Alignment explanation
Indices: 67750--67831 Score: 58
Period size: 9 Copynumber: 10.1 Consensus size: 9
67740 ATCAGAATAG
67750 GCCATCAGA
1 GCCATCAGA
67759 GCCATCAGA
1 GCCATCAGA
*
67768 G-AAT-AG-
1 GCCATCAGA
*
67774 GCCATCAAA
1 GCCATCAGA
67783 G--A--AGA
1 GCCATCAGA
67788 GGCCATCAGA
1 -GCCATCAGA
*
67798 G-AAT-AG-
1 GCCATCAGA
67804 GCCATCAGA
1 GCCATCAGA
67813 GCCATCAGA
1 GCCATCAGA
67822 GCCATCAGA
1 GCCATCAGA
67831 G
1 G
67832 AATAGGCCAT
Statistics
Matches: 56, Mismatches: 6, Indels: 22
0.67 0.07 0.26
Matches are distributed among these distances:
5 2 0.04
6 3 0.05
7 9 0.16
8 8 0.14
9 31 0.55
10 3 0.05
ACGTcount: A:0.38, C:0.26, G:0.26, T:0.11
Consensus pattern (9 bp):
GCCATCAGA
Left flanking sequence: Indices 67250 -- 67749
GACAAGCCGTTCGACAAGGTGTTTGGCGACATTTCCGAGAAGATCTACGACGAGGTCAACGCCGA
GGTGAACAAGTACGTGCCCAAGAAGTGGCGCCAGGCGGCGGAGGACTTGGTGACGCCCAAGGAGT
ACGAGTTCACCGAGCGGGTGCAGCCCGAGACCGAGCGCGAGGCCGCGGTGAACACCATCATCAAC
TTGATCCCCTATCTCCCGTTGTCGCGGTTCACCGCGTGGCTCGACAAGATCTACGGGTTGATTGC
GGTGCTGAGCCCCAGCGAGCGGTTGTACTTGCTGCGGTCGTTGTGGGTGGTGATTGGGATGTCGC
TTGACCTCAACCGGTGCGAGTTGGCGTACCCGTGGTGGTACGAGAAGGTGCGGATGCCCGAGAAC
AAGCCGTTCATGTCGAAGTTTTAGAGTCTATAGAGAATGATGAAGTAATGTGTAGTAGCTAAGAG
TGGTGATCAGAGAATAGGCCATCAGAGAATAGGCCATCAGAATAG
Right flanking sequence: Indices 67832 -- 68331
AATAGGCCATCAAAGAAGAGGCCATCAGAGAATAGGCCATCAGAGAATAAGCCATCTGAAGAATT
AAATTGAGCCATGTTCAATAAGCAGGTTCTCTGGGCTTTTGGCAGCGTAGTTCGGAGAGCCAGAT
ATGAAGTGATCCGGGTATAACCACTCAACGCGTTTACCAATGGAGCTTTTGAGCTAGTTTCGTGA
CTATGTCCAACCGTAGAAGCCCATCCTTCTTCAAACGTGGACTCTCCACCTATTACTACCACACC
ACTACGTGTATGCAATTCGACTATATATATGCTAGATTGTCCAAGTACAACTTCTTCTCGAGGTT
CCGCCGACACGTCTGGGTGTCGCGGTGGCGCTTCAACGCGTCCTTGCGGGCAAAACCCTTGCCAC
ACAAGTCGCAGATATTAGGTGGTTGCACCAAGTGCTGTTTTTCGTGGCGCTTCAAGTCCAGCAGG
CGCCTGAACCCCTGCGAGCACTTGGGACACTGGAACTTGCGCTCC
Found at i:67772 original size:37 final size:38
Alignment explanation
Indices: 67722--67798 Score: 129
Period size: 37 Copynumber: 2.0 Consensus size: 38
67712 CAGAGAATAG
*
67722 GCCATCAGAGAATAGGCCATC-AGAATAGGCCATCAGA
1 GCCATCAGAGAATAGGCCATCAAGAAGAGGCCATCAGA
67759 GCCATCAGAGAATAGGCCATCAAAGAAGAGGCCATCAGA
1 GCCATCAGAGAATAGGCCATC-AAGAAGAGGCCATCAGA
67798 G
1 G
67799 AATAGGCCAT
Statistics
Matches: 37, Mismatches: 1, Indels: 2
0.93 0.03 0.05
Matches are distributed among these distances:
37 21 0.57
39 16 0.43
ACGTcount: A:0.39, C:0.23, G:0.26, T:0.12
Consensus pattern (38 bp):
GCCATCAGAGAATAGGCCATCAAGAAGAGGCCATCAGA
Left flanking sequence: Indices 67222 -- 67721
CCACAACATCGTCGAGCAGAACGACGCCGACAAGCCGTTCGACAAGGTGTTTGGCGACATTTCCG
AGAAGATCTACGACGAGGTCAACGCCGAGGTGAACAAGTACGTGCCCAAGAAGTGGCGCCAGGCG
GCGGAGGACTTGGTGACGCCCAAGGAGTACGAGTTCACCGAGCGGGTGCAGCCCGAGACCGAGCG
CGAGGCCGCGGTGAACACCATCATCAACTTGATCCCCTATCTCCCGTTGTCGCGGTTCACCGCGT
GGCTCGACAAGATCTACGGGTTGATTGCGGTGCTGAGCCCCAGCGAGCGGTTGTACTTGCTGCGG
TCGTTGTGGGTGGTGATTGGGATGTCGCTTGACCTCAACCGGTGCGAGTTGGCGTACCCGTGGTG
GTACGAGAAGGTGCGGATGCCCGAGAACAAGCCGTTCATGTCGAAGTTTTAGAGTCTATAGAGAA
TGATGAAGTAATGTGTAGTAGCTAAGAGTGGTGATCAGAGAATAG
Right flanking sequence: Indices 67799 -- 68298
AATAGGCCATCAGAGCCATCAGAGCCATCAGAGAATAGGCCATCAAAGAAGAGGCCATCAGAGAA
TAGGCCATCAGAGAATAAGCCATCTGAAGAATTAAATTGAGCCATGTTCAATAAGCAGGTTCTCT
GGGCTTTTGGCAGCGTAGTTCGGAGAGCCAGATATGAAGTGATCCGGGTATAACCACTCAACGCG
TTTACCAATGGAGCTTTTGAGCTAGTTTCGTGACTATGTCCAACCGTAGAAGCCCATCCTTCTTC
AAACGTGGACTCTCCACCTATTACTACCACACCACTACGTGTATGCAATTCGACTATATATATGC
TAGATTGTCCAAGTACAACTTCTTCTCGAGGTTCCGCCGACACGTCTGGGTGTCGCGGTGGCGCT
TCAACGCGTCCTTGCGGGCAAAACCCTTGCCACACAAGTCGCAGATATTAGGTGGTTGCACCAAG
TGCTGTTTTTCGTGGCGCTTCAAGTCCAGCAGGCGCCTGAACCCC
Found at i:67775 original size:24 final size:24
Alignment explanation
Indices: 67743--67822 Score: 106
Period size: 24 Copynumber: 3.1 Consensus size: 24
67733 ATAGGCCATC
67743 AGAATAGGCCATCAGAGCCATCAG
1 AGAATAGGCCATCAGAGCCATCAG
67767 AGAATAGGCCATCAAAGAAGAGGCCATCAG
1 AGAATAGGCCATC-----AGA-GCCATCAG
67797 AGAATAGGCCATCAGAGCCATCAG
1 AGAATAGGCCATCAGAGCCATCAG
67821 AG
1 AG
67823 CCATCAGAGA
Statistics
Matches: 50, Mismatches: 0, Indels: 12
0.81 0.00 0.19
Matches are distributed among these distances:
24 23 0.46
25 3 0.06
29 3 0.06
30 21 0.42
ACGTcount: A:0.40, C:0.23, G:0.26, T:0.11
Consensus pattern (24 bp):
AGAATAGGCCATCAGAGCCATCAG
Left flanking sequence: Indices 67243 -- 67742
CGACGCCGACAAGCCGTTCGACAAGGTGTTTGGCGACATTTCCGAGAAGATCTACGACGAGGTCA
ACGCCGAGGTGAACAAGTACGTGCCCAAGAAGTGGCGCCAGGCGGCGGAGGACTTGGTGACGCCC
AAGGAGTACGAGTTCACCGAGCGGGTGCAGCCCGAGACCGAGCGCGAGGCCGCGGTGAACACCAT
CATCAACTTGATCCCCTATCTCCCGTTGTCGCGGTTCACCGCGTGGCTCGACAAGATCTACGGGT
TGATTGCGGTGCTGAGCCCCAGCGAGCGGTTGTACTTGCTGCGGTCGTTGTGGGTGGTGATTGGG
ATGTCGCTTGACCTCAACCGGTGCGAGTTGGCGTACCCGTGGTGGTACGAGAAGGTGCGGATGCC
CGAGAACAAGCCGTTCATGTCGAAGTTTTAGAGTCTATAGAGAATGATGAAGTAATGTGTAGTAG
CTAAGAGTGGTGATCAGAGAATAGGCCATCAGAGAATAGGCCATC
Right flanking sequence: Indices 67823 -- 68322
CCATCAGAGAATAGGCCATCAAAGAAGAGGCCATCAGAGAATAGGCCATCAGAGAATAAGCCATC
TGAAGAATTAAATTGAGCCATGTTCAATAAGCAGGTTCTCTGGGCTTTTGGCAGCGTAGTTCGGA
GAGCCAGATATGAAGTGATCCGGGTATAACCACTCAACGCGTTTACCAATGGAGCTTTTGAGCTA
GTTTCGTGACTATGTCCAACCGTAGAAGCCCATCCTTCTTCAAACGTGGACTCTCCACCTATTAC
TACCACACCACTACGTGTATGCAATTCGACTATATATATGCTAGATTGTCCAAGTACAACTTCTT
CTCGAGGTTCCGCCGACACGTCTGGGTGTCGCGGTGGCGCTTCAACGCGTCCTTGCGGGCAAAAC
CCTTGCCACACAAGTCGCAGATATTAGGTGGTTGCACCAAGTGCTGTTTTTCGTGGCGCTTCAAG
TCCAGCAGGCGCCTGAACCCCTGCGAGCACTTGGGACACTGGAAC
Found at i:67838 original size:63 final size:63
Alignment explanation
Indices: 67710--67876 Score: 280
Period size: 63 Copynumber: 2.6 Consensus size: 63
67700 AAGAGTGGTG
* *
67710 ATCAGAGAATAGGCCATCAGAGAATAGGCCATCAGAATAGGCCATCAGAGCCATCAGAGAATAGG
1 ATCAAAGAAGAGGCCATCAGAGAATAGGCCATCAG---A-GCCATCAGAGCCATCAGAGAATAGG
67775 CC
62 CC
67777 ATCAAAGAAGAGGCCATCAGAGAATAGGCCATCAGAGCCATCAGAGCCATCAGAGAATAGGCC
1 ATCAAAGAAGAGGCCATCAGAGAATAGGCCATCAGAGCCATCAGAGCCATCAGAGAATAGGCC
67840 ATCAAAGAAGAGGCCATCAGAGAATAGGCCATCAGAG
1 ATCAAAGAAGAGGCCATCAGAGAATAGGCCATCAGAG
67877 AATAAGCCAT
Statistics
Matches: 98, Mismatches: 2, Indels: 4
0.94 0.02 0.04
Matches are distributed among these distances:
63 64 0.65
64 1 0.01
67 33 0.34
ACGTcount: A:0.40, C:0.22, G:0.26, T:0.12
Consensus pattern (63 bp):
ATCAAAGAAGAGGCCATCAGAGAATAGGCCATCAGAGCCATCAGAGCCATCAGAGAATAGGCC
Left flanking sequence: Indices 67210 -- 67709
CCAGGTGGACAGCCACAACATCGTCGAGCAGAACGACGCCGACAAGCCGTTCGACAAGGTGTTTG
GCGACATTTCCGAGAAGATCTACGACGAGGTCAACGCCGAGGTGAACAAGTACGTGCCCAAGAAG
TGGCGCCAGGCGGCGGAGGACTTGGTGACGCCCAAGGAGTACGAGTTCACCGAGCGGGTGCAGCC
CGAGACCGAGCGCGAGGCCGCGGTGAACACCATCATCAACTTGATCCCCTATCTCCCGTTGTCGC
GGTTCACCGCGTGGCTCGACAAGATCTACGGGTTGATTGCGGTGCTGAGCCCCAGCGAGCGGTTG
TACTTGCTGCGGTCGTTGTGGGTGGTGATTGGGATGTCGCTTGACCTCAACCGGTGCGAGTTGGC
GTACCCGTGGTGGTACGAGAAGGTGCGGATGCCCGAGAACAAGCCGTTCATGTCGAAGTTTTAGA
GTCTATAGAGAATGATGAAGTAATGTGTAGTAGCTAAGAGTGGTG
Right flanking sequence: Indices 67877 -- 68376
AATAAGCCATCTGAAGAATTAAATTGAGCCATGTTCAATAAGCAGGTTCTCTGGGCTTTTGGCAG
CGTAGTTCGGAGAGCCAGATATGAAGTGATCCGGGTATAACCACTCAACGCGTTTACCAATGGAG
CTTTTGAGCTAGTTTCGTGACTATGTCCAACCGTAGAAGCCCATCCTTCTTCAAACGTGGACTCT
CCACCTATTACTACCACACCACTACGTGTATGCAATTCGACTATATATATGCTAGATTGTCCAAG
TACAACTTCTTCTCGAGGTTCCGCCGACACGTCTGGGTGTCGCGGTGGCGCTTCAACGCGTCCTT
GCGGGCAAAACCCTTGCCACACAAGTCGCAGATATTAGGTGGTTGCACCAAGTGCTGTTTTTCGT
GGCGCTTCAAGTCCAGCAGGCGCCTGAACCCCTGCGAGCACTTGGGACACTGGAACTTGCGCTCC
TCGTCGTAAGCGTCGTAGTCGTTCGACAGCGGAGGCAGCTGGGCC
Found at i:70278 original size:13 final size:13
Alignment explanation
Indices: 70260--70286 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
70250 CATTGTTACC
70260 AATCAATCTGATA
1 AATCAATCTGATA
70273 AATCAATCTGATA
1 AATCAATCTGATA
70286 A
1 A
70287 GCTAGAGAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.48, C:0.15, G:0.07, T:0.30
Consensus pattern (13 bp):
AATCAATCTGATA
Left flanking sequence: Indices 69760 -- 70259
CGAATGCATCAATCGCCGGAGGGGAGGTGTCAGCGATCGGAGCTACGATTAGCAGGTGAAAATAG
CGTTTGATAACAATCGGAAAGAATCTGGTACCGATCTAGCGGTTCGTATTGAGTTTTGTGCTAGT
AGAGAGCCCCCATCCTGTCAACGTGGGCAGACGTTAAACGTCACGGTAGGCCGCGAACCTTCGAT
TGATGTATTAATAAGGTATGGTAGTATTTTTATCTATCACGGTAGCGGAGGCTCATTAGTTTGAA
TAGTGGTTATCGGTGGCTTAAACCAGACATTTTTTGAGGTCTTTAGTGAGGAGGCATACTCTGAG
AGGCATATTATCCTAAAAGGGCATATTTTGAGGGGACACACTGGATGTCCCGCCGGGGTCTCGCC
CCACAACTGGCCACTGAGTAGAAAAGAACACAAGGGCTGTGTCCATAGCAGTAGCTAGTTGGGAG
GATTAAGATCTTCTTGTACACTCGCCAGATTTCTCCATTGTTACC
Right flanking sequence: Indices 70287 -- 70786
GCTAGAGAAAAATCTCAGCGCTCAGAGCGCACGCAAAATCTCCAAGAAATAGACCAACCTCGTGT
ATACTACCCCCGCCAACGTGCCTTTACTTTTGCATTCTTCTCTTCCCGAATCTGAGCCGCACGGT
GTGCGGCTTGATATTTTTCACGATCCAGTGACTCATGTAGAGCATGGACTACCCCAAGACCAAGA
GTTACAGTCGGAACGCCATCTCGGAGATTCTTCCGCTCGATCCCGAGCTGATCCAAGAGATAATT
GACTATGCGCTAAGTCTCAAGAACGCTGCTGCGATTGAAAACCATTTAATCGACATTTTGGGCCA
GTCGGAGCTTGCTCTTCGGTTCGTTTCCCGGTTTCTCGAGCTCAAGAAGGAAGAAGAAGAGACGC
TACGTGCCAAGCAAGAGAAGCTACGCGAGAAATTGGCGCTGAAACCGGCGATTCCGGAGGCTCCC
CCATCGAAAACCCATCCGGCCTGGAAAGATCCTGTGGAACCGGTA
Found at i:72843 original size:6 final size:6
Alignment explanation
Indices: 72832--72915 Score: 51
Period size: 6 Copynumber: 14.0 Consensus size: 6
72822 TCACTGCTGA
* * ** * ** *
72832 CAAGTC CAAGTC CGACTC CAAGTC TGACTC CAAGTC TGACTC CAAGTC
1 CAAGTC CAAGTC CAAGTC CAAGTC CAAGTC CAAGTC CAAGTC CAAGTC
* * * * *
72880 GAAGTC CGAGTC TAAGTC CGAGTC CAAGAC CAAGTC
1 CAAGTC CAAGTC CAAGTC CAAGTC CAAGTC CAAGTC
72916 TGACGGCAAG
Statistics
Matches: 52, Mismatches: 26, Indels: 0
0.67 0.33 0.00
Matches are distributed among these distances:
6 52 1.00
ACGTcount: A:0.29, C:0.32, G:0.20, T:0.19
Consensus pattern (6 bp):
CAAGTC
Left flanking sequence: Indices 72332 -- 72831
GCTCGGCAGCGTGAATCGATCCCTGACGAAATCGTGACCCTTATCTCTCGCCTGTAGTGCCACAT
TTCCCCAGTTTTTATTTCAGCCGTACCATGTGGGGTATGTCACAAGAGCTTTTCACGAGCGAACA
ATGCAGCTCAGCCACGGGTATAAATAATGGACGCTTCCTCGGGTGTTGGGCCAATGCTTTCGCTT
TCTATTTTTGCCCTTGTTGCTGTGGCCGTGGCCCAGGACGTTTACACTATTGAGGACGGTGAGAC
CTTCGTGTTGGTCAAGCCTGAGGACGCCACCAAGATGATGGGCCAGTACGGCTTTGGCGACGCCA
CTGCCGGGTTGAAGTACTACTCGTCGCTTTACGAGCAGTACGACGGCAAGATCCCCTTCGGTACC
CTCACTGCTAAGATCTACGAGGACGCGGGTCTTGCCACCGCTGTCGAGGAGTTTGCCTCCGTCTC
CGACTTGTCTGGGTTGTCGTCGCTTGTGGACTCTGTCACTGCTGA
Right flanking sequence: Indices 72916 -- 73415
TGACGGCAAGTCCGAGTCCAACGCGGCTGCCGTTGGTGGTATGGCTGCTGGCGCCATTGGTGCCA
TCGCCGGGATCTTGCTTTTGTAGTTCAATCAACAGACTGTAGGATCAATAGACTGTAGGATCGAC
AAACCGTAGGATCGACAAACCGTGTAAAAAATGTACAGTAGTGTTCTATGTAGGTAGCCGTGCTA
GGGCTAATGCTATGCTATCGACGCATTCTCCGCTTGAATCTCGCGGTTCTCGGGTCGTTTATCTT
CAACCGCTGGTAGTTCCGGCTCACGGGCGCCACCCCGTTCTTCACTGGCGCCGGGCGTTTGTACT
CAAACTCGTCCTCCAGCTCCAGCTCCTCCTTGTCCAGCGCGTCCACCTGGGTGTTGAGTTTGCGC
TTTTGGCGGAGGATGTCCTCTGTTTTGACTTCCACCTCCTTGGTGCTTTCTTTGATGCGGTCGAG
CTCGGCGTGGATGTCCTTGCCGTCCAACGACGCGCCCGTCTCGGC
Found at i:72853 original size:12 final size:12
Alignment explanation
Indices: 72836--72879 Score: 79
Period size: 12 Copynumber: 3.7 Consensus size: 12
72826 TGCTGACAAG
*
72836 TCCAAGTCCGAC
1 TCCAAGTCTGAC
72848 TCCAAGTCTGAC
1 TCCAAGTCTGAC
72860 TCCAAGTCTGAC
1 TCCAAGTCTGAC
72872 TCCAAGTC
1 TCCAAGTC
72880 GAAGTCCGAG
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
12 31 1.00
ACGTcount: A:0.25, C:0.36, G:0.16, T:0.23
Consensus pattern (12 bp):
TCCAAGTCTGAC
Left flanking sequence: Indices 72336 -- 72835
GGCAGCGTGAATCGATCCCTGACGAAATCGTGACCCTTATCTCTCGCCTGTAGTGCCACATTTCC
CCAGTTTTTATTTCAGCCGTACCATGTGGGGTATGTCACAAGAGCTTTTCACGAGCGAACAATGC
AGCTCAGCCACGGGTATAAATAATGGACGCTTCCTCGGGTGTTGGGCCAATGCTTTCGCTTTCTA
TTTTTGCCCTTGTTGCTGTGGCCGTGGCCCAGGACGTTTACACTATTGAGGACGGTGAGACCTTC
GTGTTGGTCAAGCCTGAGGACGCCACCAAGATGATGGGCCAGTACGGCTTTGGCGACGCCACTGC
CGGGTTGAAGTACTACTCGTCGCTTTACGAGCAGTACGACGGCAAGATCCCCTTCGGTACCCTCA
CTGCTAAGATCTACGAGGACGCGGGTCTTGCCACCGCTGTCGAGGAGTTTGCCTCCGTCTCCGAC
TTGTCTGGGTTGTCGTCGCTTGTGGACTCTGTCACTGCTGACAAG
Right flanking sequence: Indices 72880 -- 73379
GAAGTCCGAGTCTAAGTCCGAGTCCAAGACCAAGTCTGACGGCAAGTCCGAGTCCAACGCGGCTG
CCGTTGGTGGTATGGCTGCTGGCGCCATTGGTGCCATCGCCGGGATCTTGCTTTTGTAGTTCAAT
CAACAGACTGTAGGATCAATAGACTGTAGGATCGACAAACCGTAGGATCGACAAACCGTGTAAAA
AATGTACAGTAGTGTTCTATGTAGGTAGCCGTGCTAGGGCTAATGCTATGCTATCGACGCATTCT
CCGCTTGAATCTCGCGGTTCTCGGGTCGTTTATCTTCAACCGCTGGTAGTTCCGGCTCACGGGCG
CCACCCCGTTCTTCACTGGCGCCGGGCGTTTGTACTCAAACTCGTCCTCCAGCTCCAGCTCCTCC
TTGTCCAGCGCGTCCACCTGGGTGTTGAGTTTGCGCTTTTGGCGGAGGATGTCCTCTGTTTTGAC
TTCCACCTCCTTGGTGCTTTCTTTGATGCGGTCGAGCTCGGCGTG
Found at i:72891 original size:24 final size:24
Alignment explanation
Indices: 72833--72936 Score: 86
Period size: 24 Copynumber: 4.3 Consensus size: 24
72823 CACTGCTGAC
*
72833 AAGTCCAAGTCCGACTCCAAGTCTG
1 AAGTCCAAGTCTGACTCCAAGTC-G
*
72858 -ACTCCAAGTCTGACTCCAAGTCG
1 AAGTCCAAGTCTGACTCCAAGTCG
* * * * *
72881 AAGTCCGAGTCTAAGTCCGAGTCC
1 AAGTCCAAGTCTGACTCCAAGTCG
* **
72905 AAGACCAAGTCTGACGGCAAGTCCG
1 AAGTCCAAGTCTGACTCCAAGT-CG
72930 -AGTCCAA
1 AAGTCCAA
72937 CGCGGCTGCC
Statistics
Matches: 60, Mismatches: 17, Indels: 5
0.73 0.21 0.06
Matches are distributed among these distances:
23 1 0.02
24 58 0.97
25 1 0.02
ACGTcount: A:0.29, C:0.31, G:0.22, T:0.18
Consensus pattern (24 bp):
AAGTCCAAGTCTGACTCCAAGTCG
Left flanking sequence: Indices 72333 -- 72832
CTCGGCAGCGTGAATCGATCCCTGACGAAATCGTGACCCTTATCTCTCGCCTGTAGTGCCACATT
TCCCCAGTTTTTATTTCAGCCGTACCATGTGGGGTATGTCACAAGAGCTTTTCACGAGCGAACAA
TGCAGCTCAGCCACGGGTATAAATAATGGACGCTTCCTCGGGTGTTGGGCCAATGCTTTCGCTTT
CTATTTTTGCCCTTGTTGCTGTGGCCGTGGCCCAGGACGTTTACACTATTGAGGACGGTGAGACC
TTCGTGTTGGTCAAGCCTGAGGACGCCACCAAGATGATGGGCCAGTACGGCTTTGGCGACGCCAC
TGCCGGGTTGAAGTACTACTCGTCGCTTTACGAGCAGTACGACGGCAAGATCCCCTTCGGTACCC
TCACTGCTAAGATCTACGAGGACGCGGGTCTTGCCACCGCTGTCGAGGAGTTTGCCTCCGTCTCC
GACTTGTCTGGGTTGTCGTCGCTTGTGGACTCTGTCACTGCTGAC
Right flanking sequence: Indices 72937 -- 73436
CGCGGCTGCCGTTGGTGGTATGGCTGCTGGCGCCATTGGTGCCATCGCCGGGATCTTGCTTTTGT
AGTTCAATCAACAGACTGTAGGATCAATAGACTGTAGGATCGACAAACCGTAGGATCGACAAACC
GTGTAAAAAATGTACAGTAGTGTTCTATGTAGGTAGCCGTGCTAGGGCTAATGCTATGCTATCGA
CGCATTCTCCGCTTGAATCTCGCGGTTCTCGGGTCGTTTATCTTCAACCGCTGGTAGTTCCGGCT
CACGGGCGCCACCCCGTTCTTCACTGGCGCCGGGCGTTTGTACTCAAACTCGTCCTCCAGCTCCA
GCTCCTCCTTGTCCAGCGCGTCCACCTGGGTGTTGAGTTTGCGCTTTTGGCGGAGGATGTCCTCT
GTTTTGACTTCCACCTCCTTGGTGCTTTCTTTGATGCGGTCGAGCTCGGCGTGGATGTCCTTGCC
GTCCAACGACGCGCCCGTCTCGGCCATCCCCCGGGGTTTGATGCG
Found at i:72927 original size:30 final size:30
Alignment explanation
Indices: 72849--72936 Score: 88
Period size: 30 Copynumber: 2.9 Consensus size: 30
72839 AAGTCCGACT
* * * *
72849 CCAAGTCTGACTCCAAGTCTGACTCCAAGT
1 CCAAGTCTGACGCCAAGTCCGAGTCCAAGA
* * *
72879 CGAAGTCCGA-GTCTAAGTCCGAGTCCAAGA
1 CCAAGTCTGACG-CCAAGTCCGAGTCCAAGA
*
72909 CCAAGTCTGACGGCAAGTCCGAGTCCAA
1 CCAAGTCTGACGCCAAGTCCGAGTCCAA
72937 CGCGGCTGCC
Statistics
Matches: 45, Mismatches: 11, Indels: 4
0.75 0.18 0.07
Matches are distributed among these distances:
30 44 0.98
31 1 0.02
ACGTcount: A:0.28, C:0.31, G:0.23, T:0.18
Consensus pattern (30 bp):
CCAAGTCTGACGCCAAGTCCGAGTCCAAGA
Left flanking sequence: Indices 72349 -- 72848
GATCCCTGACGAAATCGTGACCCTTATCTCTCGCCTGTAGTGCCACATTTCCCCAGTTTTTATTT
CAGCCGTACCATGTGGGGTATGTCACAAGAGCTTTTCACGAGCGAACAATGCAGCTCAGCCACGG
GTATAAATAATGGACGCTTCCTCGGGTGTTGGGCCAATGCTTTCGCTTTCTATTTTTGCCCTTGT
TGCTGTGGCCGTGGCCCAGGACGTTTACACTATTGAGGACGGTGAGACCTTCGTGTTGGTCAAGC
CTGAGGACGCCACCAAGATGATGGGCCAGTACGGCTTTGGCGACGCCACTGCCGGGTTGAAGTAC
TACTCGTCGCTTTACGAGCAGTACGACGGCAAGATCCCCTTCGGTACCCTCACTGCTAAGATCTA
CGAGGACGCGGGTCTTGCCACCGCTGTCGAGGAGTTTGCCTCCGTCTCCGACTTGTCTGGGTTGT
CGTCGCTTGTGGACTCTGTCACTGCTGACAAGTCCAAGTCCGACT
Right flanking sequence: Indices 72937 -- 73436
CGCGGCTGCCGTTGGTGGTATGGCTGCTGGCGCCATTGGTGCCATCGCCGGGATCTTGCTTTTGT
AGTTCAATCAACAGACTGTAGGATCAATAGACTGTAGGATCGACAAACCGTAGGATCGACAAACC
GTGTAAAAAATGTACAGTAGTGTTCTATGTAGGTAGCCGTGCTAGGGCTAATGCTATGCTATCGA
CGCATTCTCCGCTTGAATCTCGCGGTTCTCGGGTCGTTTATCTTCAACCGCTGGTAGTTCCGGCT
CACGGGCGCCACCCCGTTCTTCACTGGCGCCGGGCGTTTGTACTCAAACTCGTCCTCCAGCTCCA
GCTCCTCCTTGTCCAGCGCGTCCACCTGGGTGTTGAGTTTGCGCTTTTGGCGGAGGATGTCCTCT
GTTTTGACTTCCACCTCCTTGGTGCTTTCTTTGATGCGGTCGAGCTCGGCGTGGATGTCCTTGCC
GTCCAACGACGCGCCCGTCTCGGCCATCCCCCGGGGTTTGATGCG
Found at i:73033 original size:16 final size:16
Alignment explanation
Indices: 73008--73058 Score: 66
Period size: 16 Copynumber: 3.2 Consensus size: 16
72998 TTGTAGTTCA
73008 ATCAACAGACTGTAGG
1 ATCAACAGACTGTAGG
*
73024 ATCAATAGACTGTAGG
1 ATCAACAGACTGTAGG
* * *
73040 ATCGACAAACCGTAGG
1 ATCAACAGACTGTAGG
73056 ATC
1 ATC
73059 GACAAACCGT
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
16 30 1.00
ACGTcount: A:0.37, C:0.20, G:0.24, T:0.20
Consensus pattern (16 bp):
ATCAACAGACTGTAGG
Left flanking sequence: Indices 72508 -- 73007
TGGGCCAATGCTTTCGCTTTCTATTTTTGCCCTTGTTGCTGTGGCCGTGGCCCAGGACGTTTACA
CTATTGAGGACGGTGAGACCTTCGTGTTGGTCAAGCCTGAGGACGCCACCAAGATGATGGGCCAG
TACGGCTTTGGCGACGCCACTGCCGGGTTGAAGTACTACTCGTCGCTTTACGAGCAGTACGACGG
CAAGATCCCCTTCGGTACCCTCACTGCTAAGATCTACGAGGACGCGGGTCTTGCCACCGCTGTCG
AGGAGTTTGCCTCCGTCTCCGACTTGTCTGGGTTGTCGTCGCTTGTGGACTCTGTCACTGCTGAC
AAGTCCAAGTCCGACTCCAAGTCTGACTCCAAGTCTGACTCCAAGTCGAAGTCCGAGTCTAAGTC
CGAGTCCAAGACCAAGTCTGACGGCAAGTCCGAGTCCAACGCGGCTGCCGTTGGTGGTATGGCTG
CTGGCGCCATTGGTGCCATCGCCGGGATCTTGCTTTTGTAGTTCA
Right flanking sequence: Indices 73059 -- 73558
GACAAACCGTGTAAAAAATGTACAGTAGTGTTCTATGTAGGTAGCCGTGCTAGGGCTAATGCTAT
GCTATCGACGCATTCTCCGCTTGAATCTCGCGGTTCTCGGGTCGTTTATCTTCAACCGCTGGTAG
TTCCGGCTCACGGGCGCCACCCCGTTCTTCACTGGCGCCGGGCGTTTGTACTCAAACTCGTCCTC
CAGCTCCAGCTCCTCCTTGTCCAGCGCGTCCACCTGGGTGTTGAGTTTGCGCTTTTGGCGGAGGA
TGTCCTCTGTTTTGACTTCCACCTCCTTGGTGCTTTCTTTGATGCGGTCGAGCTCGGCGTGGATG
TCCTTGCCGTCCAACGACGCGCCCGTCTCGGCCATCCCCCGGGGTTTGATGCGCCAGTTACGCGT
CGTGCGCTTCTGGGTCTGTGCTCGCTTTCTCTTCACCGGGCTCCCCTCGGTTGCGGGCTCCTCGT
CCTCCTCTTCCTCTTGGTCGCTCTCCATTTTGAGCACGTTGCCGT
Found at i:73059 original size:16 final size:16
Alignment explanation
Indices: 73035--73068 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
73025 TCAATAGACT
73035 GTAGGATCGACAAACC
1 GTAGGATCGACAAACC
73051 GTAGGATCGACAAACC
1 GTAGGATCGACAAACC
73067 GT
1 GT
73069 GTAAAAAATG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.35, C:0.24, G:0.26, T:0.15
Consensus pattern (16 bp):
GTAGGATCGACAAACC
Left flanking sequence: Indices 72535 -- 73034
TGCCCTTGTTGCTGTGGCCGTGGCCCAGGACGTTTACACTATTGAGGACGGTGAGACCTTCGTGT
TGGTCAAGCCTGAGGACGCCACCAAGATGATGGGCCAGTACGGCTTTGGCGACGCCACTGCCGGG
TTGAAGTACTACTCGTCGCTTTACGAGCAGTACGACGGCAAGATCCCCTTCGGTACCCTCACTGC
TAAGATCTACGAGGACGCGGGTCTTGCCACCGCTGTCGAGGAGTTTGCCTCCGTCTCCGACTTGT
CTGGGTTGTCGTCGCTTGTGGACTCTGTCACTGCTGACAAGTCCAAGTCCGACTCCAAGTCTGAC
TCCAAGTCTGACTCCAAGTCGAAGTCCGAGTCTAAGTCCGAGTCCAAGACCAAGTCTGACGGCAA
GTCCGAGTCCAACGCGGCTGCCGTTGGTGGTATGGCTGCTGGCGCCATTGGTGCCATCGCCGGGA
TCTTGCTTTTGTAGTTCAATCAACAGACTGTAGGATCAATAGACT
Right flanking sequence: Indices 73069 -- 73568
GTAAAAAATGTACAGTAGTGTTCTATGTAGGTAGCCGTGCTAGGGCTAATGCTATGCTATCGACG
CATTCTCCGCTTGAATCTCGCGGTTCTCGGGTCGTTTATCTTCAACCGCTGGTAGTTCCGGCTCA
CGGGCGCCACCCCGTTCTTCACTGGCGCCGGGCGTTTGTACTCAAACTCGTCCTCCAGCTCCAGC
TCCTCCTTGTCCAGCGCGTCCACCTGGGTGTTGAGTTTGCGCTTTTGGCGGAGGATGTCCTCTGT
TTTGACTTCCACCTCCTTGGTGCTTTCTTTGATGCGGTCGAGCTCGGCGTGGATGTCCTTGCCGT
CCAACGACGCGCCCGTCTCGGCCATCCCCCGGGGTTTGATGCGCCAGTTACGCGTCGTGCGCTTC
TGGGTCTGTGCTCGCTTTCTCTTCACCGGGCTCCCCTCGGTTGCGGGCTCCTCGTCCTCCTCTTC
CTCTTGGTCGCTCTCCATTTTGAGCACGTTGCCGTCCTCGTCCTT
Found at i:74686 original size:12 final size:12
Alignment explanation
Indices: 74669--74695 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
74659 TTAGAGTCGT
74669 CAGCGGACGAGG
1 CAGCGGACGAGG
74681 CAGCGGACGAGG
1 CAGCGGACGAGG
74693 CAG
1 CAG
74696 ACTCCTTGGC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.26, C:0.26, G:0.48, T:0.00
Consensus pattern (12 bp):
CAGCGGACGAGG
Left flanking sequence: Indices 74169 -- 74668
GTTAATGAGACGCGTCGCGCTGATGCGTACAGGCGTTAAGAGCACGAACCGATGGGAGCGTAAAA
GGCATCAAAGCGGTGTAAATAGAAATAGAATAGTTGGGATGGTAATTGTCATTTTTGAGAGGGAT
AGTGTAGATGGTGGCGATATCGTGGACTCCGGTAGCCACCCACATTTCGATTGTCTATGGTTGAA
AAAAAGCTCACAAGACGACTAGCCTTTTAGACCATTATGGCCTCTACGATGTGTGGAGTACACCT
AGGCGGTACCATCCCGTTACCATCCACTTGTATTACTTGGATTACCTCAGGTTTCCAGTGCACCC
GTTCGCACCCGTTGCCGGTGCTCGCACACAGCACCTATGTGCCTACAACACTCACTTTTAACATC
CATTAAACGTATGCAAGGTATATAACATTAGAAGAGGGCCATGATCATGGCAGCCACCGCGGCGG
AACCGGCGCCGGCGACGGCAGCACCGTTGCCCGACTTAGAGTCGT
Right flanking sequence: Indices 74696 -- 75195
ACTCCTTGGCGGAAGAGGCCTTGGACTTGGCAGAAGACTCAGCCTTGGAGGCCTCGGACTTGACA
GAGCTCGACTCGTCGGCGTCGGTGGCAGAGGCAAGGGCAGACAGGGCCAGCTTGGTCACGGAAGC
AAGTTCCGACAGGGCCTCGGCGGTGGCGGAAGAAAGCTCCGAAGCAGCAGACTCCTTGTCAGACT
CAGCGGACGAAGCAGCGGACTCGGCAACAGCGGCAGACGAGGCGGCAGCAGAGATGTCCGAAGCA
GAAGCAGCGGCCACCACGTCGGTACCGATGGTGGTGGTGTAGTAGTTACCCCAGGGGATCGAGCC
CAGGTACTGGTCGTACATCGACGAGTACAAGGCGACCTGGGCGGGGATCAGGGCCAGGGGGAAGT
CACCGTTCAGCACGAGGTACGACGAGAAAGCCTCGGGAGACATGGTCAAGTAGGGGGTCTCAGAG
AGCGCGGCAGCCACCTCGTCAGCGTTGGTGGGCACCACCAAGGCG
Found at i:76290 original size:14 final size:14
Alignment explanation
Indices: 76255--76408 Score: 168
Period size: 14 Copynumber: 11.1 Consensus size: 14
76245 GCAGACACGA
*
76255 TGAGCTGGGTGAAG
1 TGAGCTGGGCGAAG
*
76269 TGAG--GGGCAAAG
1 TGAGCTGGGCGAAG
**
76281 TGAGCTGGGCGGGG
1 TGAGCTGGGCGAAG
*
76295 TGAGCTGGGCGGAG
1 TGAGCTGGGCGAAG
**
76309 TGAGCTAAGCGAAG
1 TGAGCTGGGCGAAG
* *
76323 TGAGTTGGGCGAAA
1 TGAGCTGGGCGAAG
* *
76337 TGAGTTGGGCGAAA
1 TGAGCTGGGCGAAG
*
76351 TGAGTTGGGCGAAG
1 TGAGCTGGGCGAAG
76365 TGAGCTGGGCGAAG
1 TGAGCTGGGCGAAG
*
76379 TGAACTGGGCGAAG
1 TGAGCTGGGCGAAG
*
76393 TGAACTGGGCGAAG
1 TGAGCTGGGCGAAG
76407 TG
1 TG
76409 CCAATTGTAG
Statistics
Matches: 122, Mismatches: 16, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
12 10 0.08
14 112 0.92
ACGTcount: A:0.24, C:0.11, G:0.48, T:0.17
Consensus pattern (14 bp):
TGAGCTGGGCGAAG
Left flanking sequence: Indices 75755 -- 76254
CGAAGCGGCTAATATAAATGTCGCAAGCGAGGGCTGGGTTAAATTGGCTGCATTCGTTTCGTGGG
GTTGCGTGGGCCTCGACGAGGTCGTTCGTCAATTAAGGTTTACGAGGCATCAACGGCGGCTATGC
ACGTGACCGAGCTAGGCGAAATTAGCCCATATTTAGCCATGGCAGAAATTGTCAAAGCTTAAAGG
CTGGGGTGGCTGCAGGTTCCAGGATAGGGGTGTAAGGAACGGGTGACCAAGTGCATGATGGAAGG
TGGGTTTGAGGAACGGTTTGGGTAACGGACTAGTTGTGAGGATAACGCGATTGTAAGACTTTTTG
TAGTTGATAGTGTGTTCTTGATAGTCTGTTTTTGACAGGTTCGTCGTCTCTTAGACCGCACGTCT
CTGCTAGTGACGCCCTGGACTGCTTCTATATTTGACTGCAGTGTCGTAGTATGGGGAAGGTGATA
CGATTGACCGGATTATCGTTGATCCGAATTTCTGGGCAGACACGA
Right flanking sequence: Indices 76409 -- 76908
CCAATTGTAGTCCTACGGCGGTTGGAATAGAGCGTGGTGGTTACAGGTACGTACCTATACTTCGT
ACTGAGGGGGCAAGTCTTTGCCATCGGTTGGTGGGTATGTCTGAGGAGTGCTTTCGGCTGGTGGA
TAGGTTTGAGGAGCCGAAGGCACCGAAGGCACCGAAGGCTCTGCCAGAGTGCCCTCCGCAGCTTC
TGTGGTGTACTCTAACCGGTCCAACGGCGAGTCGGGGACGCTCTTCGACACGTACTTCGCCTTGG
ACACCCGCAACGTGCCCTGCCACACCCCGTCCACCCACAACTCGCCATAGTAGACTTTCGGGCTC
ACCCGCTCCAAGAGCGTGGGGTTGGCGAAAACCTGTTTCTCGAAAATGACCTCGGGCAACACCCG
GTCGAGGGCGTCCTGGACGTCCGCCATCGAGGTGTTCGGGGTGCGCTTGTGGAGCTCGTAGTAGT
AGGTGCCAAACTTGCCCCTTCTGGGGTATTTGAGGCCCCACCCAT
Found at i:76566 original size:9 final size:9
Alignment explanation
Indices: 76552--76577 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
76542 GTTTGAGGAG
76552 CCGAAGGCA
1 CCGAAGGCA
76561 CCGAAGGCA
1 CCGAAGGCA
76570 CCGAAGGC
1 CCGAAGGC
76578 TCTGCCAGAG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.31, C:0.35, G:0.35, T:0.00
Consensus pattern (9 bp):
CCGAAGGCA
Left flanking sequence: Indices 76052 -- 76551
GAGGATAACGCGATTGTAAGACTTTTTGTAGTTGATAGTGTGTTCTTGATAGTCTGTTTTTGACA
GGTTCGTCGTCTCTTAGACCGCACGTCTCTGCTAGTGACGCCCTGGACTGCTTCTATATTTGACT
GCAGTGTCGTAGTATGGGGAAGGTGATACGATTGACCGGATTATCGTTGATCCGAATTTCTGGGC
AGACACGATGAGCTGGGTGAAGTGAGGGGCAAAGTGAGCTGGGCGGGGTGAGCTGGGCGGAGTGA
GCTAAGCGAAGTGAGTTGGGCGAAATGAGTTGGGCGAAATGAGTTGGGCGAAGTGAGCTGGGCGA
AGTGAACTGGGCGAAGTGAACTGGGCGAAGTGCCAATTGTAGTCCTACGGCGGTTGGAATAGAGC
GTGGTGGTTACAGGTACGTACCTATACTTCGTACTGAGGGGGCAAGTCTTTGCCATCGGTTGGTG
GGTATGTCTGAGGAGTGCTTTCGGCTGGTGGATAGGTTTGAGGAG
Right flanking sequence: Indices 76578 -- 77077
TCTGCCAGAGTGCCCTCCGCAGCTTCTGTGGTGTACTCTAACCGGTCCAACGGCGAGTCGGGGAC
GCTCTTCGACACGTACTTCGCCTTGGACACCCGCAACGTGCCCTGCCACACCCCGTCCACCCACA
ACTCGCCATAGTAGACTTTCGGGCTCACCCGCTCCAAGAGCGTGGGGTTGGCGAAAACCTGTTTC
TCGAAAATGACCTCGGGCAACACCCGGTCGAGGGCGTCCTGGACGTCCGCCATCGAGGTGTTCGG
GGTGCGCTTGTGGAGCTCGTAGTAGTAGGTGCCAAACTTGCCCCTTCTGGGGTATTTGAGGCCCC
ACCCATGGCGAGCCTGGCAGAACTGGGCTAGAGCAGACACCCCGCTGCACACGCAGAGGGCGATA
ACTATAACTAAAAACCACATTGGTTCCGGGGTGGGTGTTCGGAGCTTTTAAGTGGCGGTACGACA
TTTCCGGTACCTGATCCATTGTTCGCCAGCGCCACAATAAAAAGG
Found at i:77887 original size:17 final size:17
Alignment explanation
Indices: 77867--77903 Score: 65
Period size: 17 Copynumber: 2.2 Consensus size: 17
77857 CCACCCATCT
*
77867 CTTTTAACCACCTTCCC
1 CTTTTAACCACCTACCC
77884 CTTTTAACCACCTACCC
1 CTTTTAACCACCTACCC
77901 CTT
1 CTT
77904 AAACGCCTCA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.19, C:0.46, G:0.00, T:0.35
Consensus pattern (17 bp):
CTTTTAACCACCTACCC
Left flanking sequence: Indices 77367 -- 77866
CCAGATCAGCGATCAGATTTATTAGAGTTTCACCAGGGATCTCTGGCCGCAGCACCCTTCTAAGC
CTCTAGACCGTCACTCCAAACACAAAATTGTTTCTCAATTATTCCATAGTCCAAACGTGTAAGCA
CCCATAGTTAGATACCAGCTACCAGTTCGCCAAGTTAAACTCCGCTACCAGTTCGCCGTCAGATC
GGTCAGACGACCATGCAGTCGTAGTAGAATAGCCCATGGTCTGTTAACACACCCAATCGCCATAT
GCCTTTCCACCCGAGCTAATAATAGTCAATTCCATAGAACACTTGGTCGACACCAACTGTCCATA
GCTTGCCTACTCCATGACCCACTTCCTAGTTCCCCTGGCGAATTACATAAAGTGTCTGTTTAGTT
CTACGTAAGTTGGTCTGCGGTTCGGGTCTATTGCAGAATAGTTACAACCAGAGCACTCCAGAACT
AAACCACTGCGAGACTACCATACAATCGAACAGCCCCACCCATCT
Right flanking sequence: Indices 77904 -- 78403
AAACGCCTCACCCTTCAAACACCCTATCCCACACCTCCTCTACCATACAAAAATCTAGTTCACGT
GTCTTAGCAAACTCCTATTAACATATCGTGCTCTACTTAGTAGCTCCTAACCCTACTTGGTAAGC
TCCTTGACAATCGCCGCCTTCACCTTGTCCACCAGCGCCTCGTCAATCAAGTTGATGCGCTTCTC
CTTGGTCGACAACGCCTTGAGCTCGGCCGGAAGCACGTCCTTCTCAAACAGGTACCCGTCAAAGC
TCGAGAGCGCCATGTCCACCACCTCGGAGAACTTGGCCGGGTGCGCGGTGGACAACGAGATGTAG
TGCGCGCCCGCGCCGTCCTTCTGGAACCGCTGGGTGGTGTGCACCCCGATGGCGGTGTGCGGGTC
GATCACGTACTGGTGGTCGCCGTACACCTGTTTGATGGTGGCCACGGTCTCCTCGTTGGTGACCC
GCGCCAGCCCAAACAACTGGCGCGCGGCCCCGACCACCTCCTCGG
Found at i:84120 original size:12 final size:12
Alignment explanation
Indices: 84103--84133 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
84093 AGGCAAAGAG
84103 GAGGGAGGCAGA
1 GAGGGAGGCAGA
*
84115 GAGGGAGGCCGA
1 GAGGGAGGCAGA
84127 GAGGGAG
1 GAGGGAG
84134 CACATGGCGC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.29, C:0.10, G:0.61, T:0.00
Consensus pattern (12 bp):
GAGGGAGGCAGA
Left flanking sequence: Indices 83603 -- 84102
ACCCGGTGCACCGACGCAACAAACAAGAGGTGGTGTTGGAGCGGTGGTTGGTGGAGTTTGACGCG
GGCGACGGCGACGAGGTCGAGTTGCCCCTCGTGTACAAGCAGGCCATTGTGCTTTTCCGGTGCTT
GTACGCGCTTGTCCGGCTCATGCCGTGTGCCCAGTTGGTGCGTGCCAACGCGCTCCGGGTGCACA
CCAAGGTGGTGGACGGCCGCCGCACCATCAGCTCCAAGGGGCGGATCGGGCTCTCGAAGCCGCTT
TGGGAGAGCAAAGCCGACGACCACATGGGCCATAAAGCGTTCAAGCCGGTGGCGACCCCGGTGGG
CACGCTCCGAGTGCTGGTGGCGTTCCGCACCCAGGCCCGGTTTGTGTTGGAGACCACAGAGAGCG
CCAGGGCCCACGAAGACGTGCGCGAGCACACCGGTGCTGTGCGCGAAAAGAGCCACAGTCCCACC
ACGGGTGCGGCAGAGGGAAAGAAGGTGGGTGGAATAGGCAAAGAG
Right flanking sequence: Indices 84134 -- 84633
CACATGGCGCCGACCCAAAGCAGACAGCAAGACACGAGCACGGAGGAAAAGAGGAGGTGCGGGAG
GAGGCACGCGAGGGTGCGGAGCCCAGACCGCGCAGAGAGTCCTTCCGCCGGGAAGGCTCGGGGCC
CGTCCGGAGCTCAGACGCCATCGACCGCCGCAGCCGCGAGGGCAACCCCCACGTGATCGCCGTAG
CGGGCCGCCGGAGCTCCGAGGGCCCCGAGCTGGTCCCCATGGCGCCCCACCCCTCGCTCGGGCAC
GACCACCCCCACCAGCCCCACTCGGTGCTGAACAACGCCACCAGCCAGCCCATCGCCATGCGGCT
GCCCATCCAGCCGTTCCGGATCGGGAGCATGAGCACGTCGCCCCCGCTCGCGTCGCTGGCCACGC
CGCCAGCGATGGAGCGACGGGTCCTGATCGCTCTGAACCGGCTGAACGCGCTGTTGGCGGCGATG
CTCCGCCAGCAACGCAACTCTCAGCTGCTGGCCACGCTGGGCATC
Found at i:85214 original size:9 final size:9
Alignment explanation
Indices: 85200--85225 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
85190 TGTTTGAAGA
85200 CGACGACGG
1 CGACGACGG
85209 CGACGACGG
1 CGACGACGG
85218 CGACGACG
1 CGACGACG
85226 CGGCTCTGCA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.23, C:0.35, G:0.42, T:0.00
Consensus pattern (9 bp):
CGACGACGG
Left flanking sequence: Indices 84700 -- 85199
AACAACACCCCCAGGTTCTCGCTGCTGTTTGGGCTGCGCACCCGGCGGCTCAGCAGGCCCCAGGA
CCTGTTGCTCGGCACGCTGGCCGGGCTGGCGTCGCTGACACCGGGCCTGGGGCTTTATTTGGACG
GAGACTCCGACGACATCTCGGGGTTCGTCCGGATGATCGACAGCAAGAGCGAGCTCCGGTTCGGG
GCGCCGCTGACGCTGGCAGACCCCTTGAACAAGTTCGCCTCGCTCCGGGCCCACCACGCCCAGTT
GAGCGACTCCGTCAACCTGTTGTACTCGCTGCGCAAGCTTCTGAACCACTCGCACAACTCGCACC
TGCCGCCCGGGAGCTATCCCGAGGCGTCGCAGTTTCCCCTGATCACCGCCCGGCTCGACGGGCAC
ACCGAGGAGCCCACGCCCGTTCCCCTGCCGCCAGCTGCGGCCCCTGCGCCCGTGGTGGCCGGGTT
GGCCACCACCCCGCGCCACATCCACTACGAGAACGTGTTTGAAGA
Right flanking sequence: Indices 85226 -- 85725
CGGCTCTGCAGGTCAGCAAGCGCGCGGTGAGCCGTGGCGACGACGACGACGACTTGCTTTTCACC
ATGAGTGACATGAACCTCGCACAAAGTAAAAACTAGACACTGCATTGGAATTTATAGAAATAGAG
AGATAGTTCGTGGATGCGTGGAGGGAGGGGTTGGTGGTTGAATTAGGAGGTGGAGATTGGGTCAG
GTATTTAAAGGGTATTGCGGTTTGATATGGGGAGTTTTACGGTTTGATATAATACGTATTGATTT
GATATAGGTACGGTTTCATGTAAGAAGTATTCGGTATTCTAAGCTAGTTTGAGTTTAGAGACTGT
GACTACAAGGCTAGCAAGAAGGTTTTTGCCTACAAATTAAGCGTATTTTTCATTTCTCTGTTGGC
TGGTTTCGCTATTTTTTCCGGTGCTGTGGCTTGGTTCCAAGCTGACGCTTTTACCTTTTAGGTTT
GTTCCATGCATGGACGTGCAATTTACGAAGCGGTGGTATTGTTAG
Found at i:86075 original size:11 final size:11
Alignment explanation
Indices: 86059--86108 Score: 57
Period size: 11 Copynumber: 4.6 Consensus size: 11
86049 CTTAAAACTT
*
86059 AAAACTTACTC
1 AAAACTCACTC
*
86070 AAAACTTACT-
1 AAAACTCACTC
*
86080 TAAACTCACTC
1 AAAACTCACTC
*
86091 AAAACTCACTT
1 AAAACTCACTC
86102 AAAACTC
1 AAAACTC
86109 TAACCATCTC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
10 8 0.24
11 26 0.76
ACGTcount: A:0.46, C:0.28, G:0.00, T:0.26
Consensus pattern (11 bp):
AAAACTCACTC
Left flanking sequence: Indices 85559 -- 86058
GGCTAGCAAGAAGGTTTTTGCCTACAAATTAAGCGTATTTTTCATTTCTCTGTTGGCTGGTTTCG
CTATTTTTTCCGGTGCTGTGGCTTGGTTCCAAGCTGACGCTTTTACCTTTTAGGTTTGTTCCATG
CATGGACGTGCAATTTACGAAGCGGTGGTATTGTTAGGACAATAGTGGAAAAGTGGTGGATAGTT
GTGTTGTCTAAAGAGTACAGAGTGTGGTTGTCGGAAAATGGTTTATGTTTATGTTTTTAGTAAGT
TCTACGGATTAATCTTTTTCGGTTGTCTGGTAATAATCATGCGTAAGTTAGAAATCTAATCGTAG
AAGAACAGAGTGCTTCTGCCCCAATGACTCTCCAGATTCTGATCAGCGTCAAGCGTTCACTTGCG
TCTCGATGGCCGATCACCTATTTTGTAGCAATAAATCATTGAGTCAATCATAGAATCTACTACTA
GTTCACCTCGAAATTGGTACCTTCAATGTCTATTACTTAAAACTT
Right flanking sequence: Indices 86109 -- 86608
TAACCATCTCGAAATCCCACCTGTCGATGCTTTTCTGTCGATGCTTTCTCCATGTTTGTTTCGTA
TCTGATGCTATAACGGCCTGAATATATGCTTGTGCCTCGAGCCAGATATCTCACTGGCCCGTACG
GCCTTAATAAGTAACTGGTGGTTTTAGCCGGCTAACCAGCTAGCACTTCGACCAACGATCAGGCC
CCGTGCCTTCAGCCGTGCCTTCAGACCCGTGCCAGCCTCCCTGTTGCAATCAACTTCTTGTGCAA
GTCAGTCCTACTTTTTCAACCACTCAGGGGCAAACTCGCCCTGCACCATCACACTACCAATATCA
AAGTTCTCAATCAACAACTCCACCCCCAACCGGCCCCCACGGGCCCCGGTAAACCTCCGGTACTC
CTCACTGACACTGGCCAAGTTCCACCCCTCCAACCGGCGCAAGCACCCGATCACGGTGCCGGTGC
GGTGCCGGCCCATGCCACAGCACACCAACACCGGGTACACCCGTT
Found at i:86090 original size:21 final size:21
Alignment explanation
Indices: 86055--86104 Score: 73
Period size: 21 Copynumber: 2.3 Consensus size: 21
86045 ATTACTTAAA
* *
86055 ACTTAAAACTTACTCAAAACTT
1 ACTT-AAACTCACTCAAAACTC
86077 ACTTAAACTCACTCAAAACTC
1 ACTTAAACTCACTCAAAACTC
86098 ACTTAAA
1 ACTTAAA
86105 ACTCTAACCA
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
21 22 0.85
22 4 0.15
ACGTcount: A:0.46, C:0.26, G:0.00, T:0.28
Consensus pattern (21 bp):
ACTTAAACTCACTCAAAACTC
Left flanking sequence: Indices 85555 -- 86054
ACAAGGCTAGCAAGAAGGTTTTTGCCTACAAATTAAGCGTATTTTTCATTTCTCTGTTGGCTGGT
TTCGCTATTTTTTCCGGTGCTGTGGCTTGGTTCCAAGCTGACGCTTTTACCTTTTAGGTTTGTTC
CATGCATGGACGTGCAATTTACGAAGCGGTGGTATTGTTAGGACAATAGTGGAAAAGTGGTGGAT
AGTTGTGTTGTCTAAAGAGTACAGAGTGTGGTTGTCGGAAAATGGTTTATGTTTATGTTTTTAGT
AAGTTCTACGGATTAATCTTTTTCGGTTGTCTGGTAATAATCATGCGTAAGTTAGAAATCTAATC
GTAGAAGAACAGAGTGCTTCTGCCCCAATGACTCTCCAGATTCTGATCAGCGTCAAGCGTTCACT
TGCGTCTCGATGGCCGATCACCTATTTTGTAGCAATAAATCATTGAGTCAATCATAGAATCTACT
ACTAGTTCACCTCGAAATTGGTACCTTCAATGTCTATTACTTAAA
Right flanking sequence: Indices 86105 -- 86604
ACTCTAACCATCTCGAAATCCCACCTGTCGATGCTTTTCTGTCGATGCTTTCTCCATGTTTGTTT
CGTATCTGATGCTATAACGGCCTGAATATATGCTTGTGCCTCGAGCCAGATATCTCACTGGCCCG
TACGGCCTTAATAAGTAACTGGTGGTTTTAGCCGGCTAACCAGCTAGCACTTCGACCAACGATCA
GGCCCCGTGCCTTCAGCCGTGCCTTCAGACCCGTGCCAGCCTCCCTGTTGCAATCAACTTCTTGT
GCAAGTCAGTCCTACTTTTTCAACCACTCAGGGGCAAACTCGCCCTGCACCATCACACTACCAAT
ATCAAAGTTCTCAATCAACAACTCCACCCCCAACCGGCCCCCACGGGCCCCGGTAAACCTCCGGT
ACTCCTCACTGACACTGGCCAAGTTCCACCCCTCCAACCGGCGCAAGCACCCGATCACGGTGCCG
GTGCGGTGCCGGCCCATGCCACAGCACACCAACACCGGGTACACC
Found at i:86148 original size:14 final size:14
Alignment explanation
Indices: 86129--86155 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
86119 GAAATCCCAC
86129 CTGTCGATGCTTTT
1 CTGTCGATGCTTTT
86143 CTGTCGATGCTTT
1 CTGTCGATGCTTT
86156 CTCCATGTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.07, C:0.22, G:0.22, T:0.48
Consensus pattern (14 bp):
CTGTCGATGCTTTT
Left flanking sequence: Indices 85629 -- 86128
TTTTCCGGTGCTGTGGCTTGGTTCCAAGCTGACGCTTTTACCTTTTAGGTTTGTTCCATGCATGG
ACGTGCAATTTACGAAGCGGTGGTATTGTTAGGACAATAGTGGAAAAGTGGTGGATAGTTGTGTT
GTCTAAAGAGTACAGAGTGTGGTTGTCGGAAAATGGTTTATGTTTATGTTTTTAGTAAGTTCTAC
GGATTAATCTTTTTCGGTTGTCTGGTAATAATCATGCGTAAGTTAGAAATCTAATCGTAGAAGAA
CAGAGTGCTTCTGCCCCAATGACTCTCCAGATTCTGATCAGCGTCAAGCGTTCACTTGCGTCTCG
ATGGCCGATCACCTATTTTGTAGCAATAAATCATTGAGTCAATCATAGAATCTACTACTAGTTCA
CCTCGAAATTGGTACCTTCAATGTCTATTACTTAAAACTTAAAACTTACTCAAAACTTACTTAAA
CTCACTCAAAACTCACTTAAAACTCTAACCATCTCGAAATCCCAC
Right flanking sequence: Indices 86156 -- 86655
CTCCATGTTTGTTTCGTATCTGATGCTATAACGGCCTGAATATATGCTTGTGCCTCGAGCCAGAT
ATCTCACTGGCCCGTACGGCCTTAATAAGTAACTGGTGGTTTTAGCCGGCTAACCAGCTAGCACT
TCGACCAACGATCAGGCCCCGTGCCTTCAGCCGTGCCTTCAGACCCGTGCCAGCCTCCCTGTTGC
AATCAACTTCTTGTGCAAGTCAGTCCTACTTTTTCAACCACTCAGGGGCAAACTCGCCCTGCACC
ATCACACTACCAATATCAAAGTTCTCAATCAACAACTCCACCCCCAACCGGCCCCCACGGGCCCC
GGTAAACCTCCGGTACTCCTCACTGACACTGGCCAAGTTCCACCCCTCCAACCGGCGCAAGCACC
CGATCACGGTGCCGGTGCGGTGCCGGCCCATGCCACAGCACACCAACACCGGGTACACCCGTTTG
TCACAGAGGATTTCAAGCGCCCGTTTGATGGTGGGCTCGTTGAGC
Found at i:86335 original size:14 final size:13
Alignment explanation
Indices: 86303--86336 Score: 52
Period size: 12 Copynumber: 2.6 Consensus size: 13
86293 ACGATCAGGC
86303 CCCGTGCCTTCAG
1 CCCGTGCCTTCAG
86316 -CCGTGCCTTCAG
1 CCCGTGCCTTCAG
86328 ACCCGTGCC
1 -CCCGTGCC
86337 AGCCTCCCTG
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
12 12 0.63
14 7 0.37
ACGTcount: A:0.09, C:0.47, G:0.24, T:0.21
Consensus pattern (13 bp):
CCCGTGCCTTCAG
Left flanking sequence: Indices 85803 -- 86302
TATGTTTTTAGTAAGTTCTACGGATTAATCTTTTTCGGTTGTCTGGTAATAATCATGCGTAAGTT
AGAAATCTAATCGTAGAAGAACAGAGTGCTTCTGCCCCAATGACTCTCCAGATTCTGATCAGCGT
CAAGCGTTCACTTGCGTCTCGATGGCCGATCACCTATTTTGTAGCAATAAATCATTGAGTCAATC
ATAGAATCTACTACTAGTTCACCTCGAAATTGGTACCTTCAATGTCTATTACTTAAAACTTAAAA
CTTACTCAAAACTTACTTAAACTCACTCAAAACTCACTTAAAACTCTAACCATCTCGAAATCCCA
CCTGTCGATGCTTTTCTGTCGATGCTTTCTCCATGTTTGTTTCGTATCTGATGCTATAACGGCCT
GAATATATGCTTGTGCCTCGAGCCAGATATCTCACTGGCCCGTACGGCCTTAATAAGTAACTGGT
GGTTTTAGCCGGCTAACCAGCTAGCACTTCGACCAACGATCAGGC
Right flanking sequence: Indices 86337 -- 86836
AGCCTCCCTGTTGCAATCAACTTCTTGTGCAAGTCAGTCCTACTTTTTCAACCACTCAGGGGCAA
ACTCGCCCTGCACCATCACACTACCAATATCAAAGTTCTCAATCAACAACTCCACCCCCAACCGG
CCCCCACGGGCCCCGGTAAACCTCCGGTACTCCTCACTGACACTGGCCAAGTTCCACCCCTCCAA
CCGGCGCAAGCACCCGATCACGGTGCCGGTGCGGTGCCGGCCCATGCCACAGCACACCAACACCG
GGTACACCCGTTTGTCACAGAGGATTTCAAGCGCCCGTTTGATGGTGGGCTCGTTGAGCGCGTCC
CAGGGGTTCATCAGGTCGGCCCCAAAGTCGTTGATGCCCAAGAACTCGATGTTGACGCCGCCCGC
AGAGCACCAGTCCAACAACTCGTCGGAGGGCTCCTCCGACGCGAGCCAGATGATGGTTTTGAGGT
GGAGCTGGGCCAAAAACGACTGGTTGATGGCCAGCGGCTGGCCCA
Found at i:87052 original size:8 final size:8
Alignment explanation
Indices: 87035--87078 Score: 58
Period size: 8 Copynumber: 5.9 Consensus size: 8
87025 GTGGGTAGAG
*
87035 GGTGTGGT
1 GGTGTAGT
87043 GGTGTAGT
1 GGTGTAGT
87051 GGTGTAGT
1 GGTGTAGT
87059 GGTGT-GT
1 GGTGTAGT
87066 GGTGT-GT
1 GGTGTAGT
87073 GG-GTAG
1 GGTGTAG
87079 AGGGTATGTG
Statistics
Matches: 34, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
6 2 0.06
7 12 0.35
8 20 0.59
ACGTcount: A:0.07, C:0.00, G:0.57, T:0.36
Consensus pattern (8 bp):
GGTGTAGT
Left flanking sequence: Indices 86535 -- 87034
GCGCAAGCACCCGATCACGGTGCCGGTGCGGTGCCGGCCCATGCCACAGCACACCAACACCGGGT
ACACCCGTTTGTCACAGAGGATTTCAAGCGCCCGTTTGATGGTGGGCTCGTTGAGCGCGTCCCAG
GGGTTCATCAGGTCGGCCCCAAAGTCGTTGATGCCCAAGAACTCGATGTTGACGCCGCCCGCAGA
GCACCAGTCCAACAACTCGTCGGAGGGCTCCTCCGACGCGAGCCAGATGATGGTTTTGAGGTGGA
GCTGGGCCAAAAACGACTGGTTGATGGCCAGCGGCTGGCCCAGCCGGTAGAGCTGGCGCTCCACG
GGACAGAAGTTGAGCGGGGGGATGATCCGCTCCTCGGGTGGCGCGCTGACTTTGCGGGGCATGGG
TGTGCTCGTGGTCGTGGACATGGAGGAGGAGGCACAGGTTTTTTCCGAGCCTCACTGGTGGGGAG
AACGGAGCGGGTAGCGGGAGCGTGGGTAGTGAAAGGTGGGTAGAG
Right flanking sequence: Indices 87079 -- 87578
AGGGTATGTGATTGCGTGGCTGTTTGGTTGTTTGGGTTTTTTTGGTTTAAGGTTGTAGGTTAGGT
ATGTGTGGTGTGTTGGACTTATCGGAGAAAAGAAGGATAGTAGAGGATCGAAGGGGTGGATAGTG
GAGCAGAGAGAAGGTGGAGAGCAGGTGTAGAGTATGTGGAAGAGCATAGAGAGCTGGTGGATATC
AGGCGGGAGATAGCTGGTGAGAGTCGATGTGACTTGTTCGTTTACTATGCGGTGGTTGTTAAAAC
CGACGAATAGTTAATTGAGACAATGGTGGGGAATGGTTTAGGTGCGGACAAGTGGTCCACGAACA
GGTCACGAGAAGGTCTAGGTATCTAACCAGGGATGGTTCATGTTGCGAGCTGACTTCAGGAGCAG
AAGCCAAGGGCCAAAGGCACCGTTGGTGAGTTTTTGTCATTCTTCGCTATGGAGGCTTTCTTACT
CAGATCAGGTACGCAACACGGTTATGGAAGTAGGTGGAAGTCCAA
Found at i:88580 original size:14 final size:14
Alignment explanation
Indices: 88533--88626 Score: 95
Period size: 14 Copynumber: 6.8 Consensus size: 14
88523 CATTCTGTAT
*
88533 GACC-ATCTATGGT
1 GACCAATCTATGGC
88546 GACCAATCGGTATGGC
1 GACCAATC--TATGGC
* * *
88562 TACCAATTTCTGGC
1 GACCAATCTATGGC
88576 GACCAA--TATGGC
1 GACCAATCTATGGC
*
88588 GACCAATCTGTGGC
1 GACCAATCTATGGC
*
88602 GACCAATCTATTGC
1 GACCAATCTATGGC
88616 GACCAATCTAT
1 GACCAATCTAT
88627 ATGGCTCTCG
Statistics
Matches: 67, Mismatches: 9, Indels: 9
0.79 0.11 0.11
Matches are distributed among these distances:
12 11 0.16
13 4 0.06
14 41 0.61
16 11 0.16
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.26
Consensus pattern (14 bp):
GACCAATCTATGGC
Left flanking sequence: Indices 88033 -- 88532
GTCAAGAGCTTCCCTGATCCGCTTCCCCCTGACCTGATCCGCTTCCTCCCCTGGCTATCCTAGCT
TTCATACATTGTCATACTTCGTAATACTGAAACACCGGGTCGTTAGAATCGTCCTCGGGCGGAGT
GACGGTGGTGTCGCGGGTGTTGTCCTTCATCGGTGTCTGGTCAACTTGGCTGGTAGCTTGTTTGT
GAATGTAGCGTCAAAACAAGGCAATGGCTCGTGGTTCTGGTGGCCGTGGCCTCCTTATATCCTCC
CCGGGGTGTCTCCCGGGGGTACCCCGCATTTCACACAATCGCCAGAAAGCAATAACGGTGGGGTG
AAGTGGTCCCACTGGTAGAGCAACGTGACGGAGCGTACTGTGATTCGATGGAGATACGGTGGGCT
GCGCAGTGGGGTGGTTATTGGGCTACTTGGCAAGTGACCATGAAGACTGGGTCGGAAGACACTAT
GCGAAGAGGGTCAAATGCCTGCTACATGGCCAGACCATTCTGTAT
Right flanking sequence: Indices 88627 -- 89126
ATGGCTCTCGAGACTTTTCAAGCCTCCTCGAGACACCAGAGTTTCTTTTGGCGGGCCTTCCCGAC
TGGCACGAACAAGGCCCCTTTTATACATGTCGCACCGATAAGGACTCGATAAGGCAAGGGAGCAA
AAGAAAGGTGGGGAATCACCTGGGAGTGAAGATGAAGGGGTTGTGTTGGTTGGTGAAAGTGGCTC
CACTCGTGGTGGTGGTAACATGGTACCCCTTGCGACCACCAATTACTAAGTTCTCCCAAATCTAA
GCAAGCACCGTGGATCTGTAGCACGGGACGAAGGTCTAGAACAATGCCTGGTGCCAGCGGTCCAT
TGATGCAGATTTACGTTGCCTAAAGTTCTTGGTTCACCGAATTGCGAGGCTGACCACCCCTATGT
AATCAGCCGCCGTGAGGGGCTGGGATGCTCCAATCCTGTCAGGGGATAGCAGAGACGAAATCAGA
CAGATAAAAACCAATACAGGAAAACTAGTCGAAAAAATCTAGAGA
Found at i:88585 original size:26 final size:26
Alignment explanation
Indices: 88556--88624 Score: 84
Period size: 26 Copynumber: 2.6 Consensus size: 26
88546 GACCAATCGG
* *
88556 TATGGCTACCAATTTCTGGCGACCAA
1 TATGGCGACCAATCTCTGGCGACCAA
*
88582 TATGGCGACCAATCTGTGGCGACCAA
1 TATGGCGACCAATCTCTGGCGACCAA
*
88608 TCTATTGCGACCAATCT
1 --TATGGCGACCAATCT
88625 ATATGGCTCT
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
26 23 0.62
28 14 0.38
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.26
Consensus pattern (26 bp):
TATGGCGACCAATCTCTGGCGACCAA
Left flanking sequence: Indices 88056 -- 88555
TCCCCCTGACCTGATCCGCTTCCTCCCCTGGCTATCCTAGCTTTCATACATTGTCATACTTCGTA
ATACTGAAACACCGGGTCGTTAGAATCGTCCTCGGGCGGAGTGACGGTGGTGTCGCGGGTGTTGT
CCTTCATCGGTGTCTGGTCAACTTGGCTGGTAGCTTGTTTGTGAATGTAGCGTCAAAACAAGGCA
ATGGCTCGTGGTTCTGGTGGCCGTGGCCTCCTTATATCCTCCCCGGGGTGTCTCCCGGGGGTACC
CCGCATTTCACACAATCGCCAGAAAGCAATAACGGTGGGGTGAAGTGGTCCCACTGGTAGAGCAA
CGTGACGGAGCGTACTGTGATTCGATGGAGATACGGTGGGCTGCGCAGTGGGGTGGTTATTGGGC
TACTTGGCAAGTGACCATGAAGACTGGGTCGGAAGACACTATGCGAAGAGGGTCAAATGCCTGCT
ACATGGCCAGACCATTCTGTATGACCATCTATGGTGACCAATCGG
Right flanking sequence: Indices 88625 -- 89124
ATATGGCTCTCGAGACTTTTCAAGCCTCCTCGAGACACCAGAGTTTCTTTTGGCGGGCCTTCCCG
ACTGGCACGAACAAGGCCCCTTTTATACATGTCGCACCGATAAGGACTCGATAAGGCAAGGGAGC
AAAAGAAAGGTGGGGAATCACCTGGGAGTGAAGATGAAGGGGTTGTGTTGGTTGGTGAAAGTGGC
TCCACTCGTGGTGGTGGTAACATGGTACCCCTTGCGACCACCAATTACTAAGTTCTCCCAAATCT
AAGCAAGCACCGTGGATCTGTAGCACGGGACGAAGGTCTAGAACAATGCCTGGTGCCAGCGGTCC
ATTGATGCAGATTTACGTTGCCTAAAGTTCTTGGTTCACCGAATTGCGAGGCTGACCACCCCTAT
GTAATCAGCCGCCGTGAGGGGCTGGGATGCTCCAATCCTGTCAGGGGATAGCAGAGACGAAATCA
GACAGATAAAAACCAATACAGGAAAACTAGTCGAAAAAATCTAGA
Found at i:89378 original size:3 final size:3
Alignment explanation
Indices: 89372--89432 Score: 61
Period size: 3 Copynumber: 19.3 Consensus size: 3
89362 GCCTTCTTCT
*
89372 CTC CTC CTC TCTC CTC CTTC C-C CTC TCTC CTC CTC CTC CTC TTTC CTC
1 CTC CTC CTC -CTC CTC C-TC CTC CTC -CTC CTC CTC CTC CTC -CTC CTC
*
89420 CTC TTC CTC CTC C
1 CTC CTC CTC CTC C
89433 CACTCAAGTG
Statistics
Matches: 49, Mismatches: 4, Indels: 10
0.78 0.06 0.16
Matches are distributed among these distances:
2 2 0.04
3 36 0.73
4 11 0.22
ACGTcount: A:0.00, C:0.61, G:0.00, T:0.39
Consensus pattern (3 bp):
CTC
Left flanking sequence: Indices 88872 -- 89371
TTCTCCCAAATCTAAGCAAGCACCGTGGATCTGTAGCACGGGACGAAGGTCTAGAACAATGCCTG
GTGCCAGCGGTCCATTGATGCAGATTTACGTTGCCTAAAGTTCTTGGTTCACCGAATTGCGAGGC
TGACCACCCCTATGTAATCAGCCGCCGTGAGGGGCTGGGATGCTCCAATCCTGTCAGGGGATAGC
AGAGACGAAATCAGACAGATAAAAACCAATACAGGAAAACTAGTCGAAAAAATCTAGAGAACACC
TTATAGAGATGAAGATCAAATAAAGATGGGCATACGCCCATAAATACTCTATAAGTTTATGGGCC
CCACACTAACCCCTCCCTGATTTGATCTACCATCGTACTTGCTTCGATCTAATTTTCCCGCTATC
TGTGCGAGCTCGCACCTAGACCACACAATACACTTCTCTGTCCATATTCTCTAACCATTGTCACT
AACTAGTCTCCATTGAATATCTTTCTATCATAATTGCCTTCTTCT
Right flanking sequence: Indices 89433 -- 89932
CACTCAAGTGCGGCGCATCGCATCAACAAAAAACACACCACTACCACATCGATGTTTGGCGCTAC
TCCTGGAGCCAACAAGGGGTTCTCCTTTGGCGGCGGCTCTTCCAACACCGCCAGCTCCGGTGGCA
ACCTCTTCGGTGGCGCGTCCAACTCCACAGCGCCCGCGTCGGGTGGGCTTTTCGGCAACAACAAC
TCCTCGAACGCCTCCTCGGGAGGAGGCCTCTTTGGCAACAACAACTCCGGCACCTCCAATGCCTC
CTCCGGAGGAGGCCTCTTTGGCAGCAACAACAACACCACCAATGCCTCGAGCACCACCCAGTCCG
GGGGCCTCTTTGGCAACAACAATAACACCCTGGGCGGGTTTGGCGCCAACGCCAGCAAACCCGGC
CTTTTTGGTGGCGCCTCCAACACCACCACCAACGCTGCTCCCGCTCTGGGTGGGCTCTTTGGCAA
CAACGCCGCCAAGCCCGCCACCACCGGGTTCGGTGCCTCCTCCTC
Found at i:89398 original size:16 final size:17
Alignment explanation
Indices: 89373--89431 Score: 77
Period size: 16 Copynumber: 3.5 Consensus size: 17
89363 CCTTCTTCTC
89373 TCCTCCTCTCTCCTCCT
1 TCCTCCTCTCTCCTCCT
89390 TCC-CCTCTCTCCTCC-
1 TCCTCCTCTCTCCTCCT
*
89405 TCCTCCTCTTTCCTCCTCT
1 TCCTCCTCTCTCCT-C-CT
89424 TCCTCCTC
1 TCCTCCTC
89432 CCACTCAAGT
Statistics
Matches: 37, Mismatches: 1, Indels: 6
0.84 0.02 0.14
Matches are distributed among these distances:
15 3 0.08
16 21 0.57
17 4 0.11
18 1 0.03
19 8 0.22
ACGTcount: A:0.00, C:0.59, G:0.00, T:0.41
Consensus pattern (17 bp):
TCCTCCTCTCTCCTCCT
Left flanking sequence: Indices 88873 -- 89372
TCTCCCAAATCTAAGCAAGCACCGTGGATCTGTAGCACGGGACGAAGGTCTAGAACAATGCCTGG
TGCCAGCGGTCCATTGATGCAGATTTACGTTGCCTAAAGTTCTTGGTTCACCGAATTGCGAGGCT
GACCACCCCTATGTAATCAGCCGCCGTGAGGGGCTGGGATGCTCCAATCCTGTCAGGGGATAGCA
GAGACGAAATCAGACAGATAAAAACCAATACAGGAAAACTAGTCGAAAAAATCTAGAGAACACCT
TATAGAGATGAAGATCAAATAAAGATGGGCATACGCCCATAAATACTCTATAAGTTTATGGGCCC
CACACTAACCCCTCCCTGATTTGATCTACCATCGTACTTGCTTCGATCTAATTTTCCCGCTATCT
GTGCGAGCTCGCACCTAGACCACACAATACACTTCTCTGTCCATATTCTCTAACCATTGTCACTA
ACTAGTCTCCATTGAATATCTTTCTATCATAATTGCCTTCTTCTC
Right flanking sequence: Indices 89432 -- 89931
CCACTCAAGTGCGGCGCATCGCATCAACAAAAAACACACCACTACCACATCGATGTTTGGCGCTA
CTCCTGGAGCCAACAAGGGGTTCTCCTTTGGCGGCGGCTCTTCCAACACCGCCAGCTCCGGTGGC
AACCTCTTCGGTGGCGCGTCCAACTCCACAGCGCCCGCGTCGGGTGGGCTTTTCGGCAACAACAA
CTCCTCGAACGCCTCCTCGGGAGGAGGCCTCTTTGGCAACAACAACTCCGGCACCTCCAATGCCT
CCTCCGGAGGAGGCCTCTTTGGCAGCAACAACAACACCACCAATGCCTCGAGCACCACCCAGTCC
GGGGGCCTCTTTGGCAACAACAATAACACCCTGGGCGGGTTTGGCGCCAACGCCAGCAAACCCGG
CCTTTTTGGTGGCGCCTCCAACACCACCACCAACGCTGCTCCCGCTCTGGGTGGGCTCTTTGGCA
ACAACGCCGCCAAGCCCGCCACCACCGGGTTCGGTGCCTCCTCCT
Found at i:89739 original size:48 final size:48
Alignment explanation
Indices: 89617--89740 Score: 149
Period size: 51 Copynumber: 2.5 Consensus size: 48
89607 GGGCTTTTCG
* * * *
89617 GCAACAACAACTCCTCGAACGCCTCCTCGGGAGGAGGCCTCTTTGGCA
1 GCAACAACAACACCTCCAATGCCTCCTCCGGAGGAGGCCTCTTTGGCA
* **
89665 ACAACAACTCCGGCACCTCCAATGCCTCCTCCGGAGGAGGCCTCTTTGGCA
1 GCAACAA---CAACACCTCCAATGCCTCCTCCGGAGGAGGCCTCTTTGGCA
*
89716 GCAACAACAACACCACCAATGCCTC
1 GCAACAACAACACCTCCAATGCCTC
89741 GAGCACCACC
Statistics
Matches: 62, Mismatches: 11, Indels: 6
0.78 0.14 0.08
Matches are distributed among these distances:
48 21 0.34
51 41 0.66
ACGTcount: A:0.26, C:0.39, G:0.20, T:0.15
Consensus pattern (48 bp):
GCAACAACAACACCTCCAATGCCTCCTCCGGAGGAGGCCTCTTTGGCA
Left flanking sequence: Indices 89117 -- 89616
AATCTAGAGAACACCTTATAGAGATGAAGATCAAATAAAGATGGGCATACGCCCATAAATACTCT
ATAAGTTTATGGGCCCCACACTAACCCCTCCCTGATTTGATCTACCATCGTACTTGCTTCGATCT
AATTTTCCCGCTATCTGTGCGAGCTCGCACCTAGACCACACAATACACTTCTCTGTCCATATTCT
CTAACCATTGTCACTAACTAGTCTCCATTGAATATCTTTCTATCATAATTGCCTTCTTCTCTCCT
CCTCTCTCCTCCTTCCCCTCTCTCCTCCTCCTCCTCTTTCCTCCTCTTCCTCCTCCCACTCAAGT
GCGGCGCATCGCATCAACAAAAAACACACCACTACCACATCGATGTTTGGCGCTACTCCTGGAGC
CAACAAGGGGTTCTCCTTTGGCGGCGGCTCTTCCAACACCGCCAGCTCCGGTGGCAACCTCTTCG
GTGGCGCGTCCAACTCCACAGCGCCCGCGTCGGGTGGGCTTTTCG
Right flanking sequence: Indices 89741 -- 90240
GAGCACCACCCAGTCCGGGGGCCTCTTTGGCAACAACAATAACACCCTGGGCGGGTTTGGCGCCA
ACGCCAGCAAACCCGGCCTTTTTGGTGGCGCCTCCAACACCACCACCAACGCTGCTCCCGCTCTG
GGTGGGCTCTTTGGCAACAACGCCGCCAAGCCCGCCACCACCGGGTTCGGTGCCTCCTCCTCCAC
CACCAATTCCGGTGGTCTCTTTGGCAACAAGCCCGCGGCGCTGGGGGGCCTCTTCGGCAATACCG
GGGGCACCACCGGGGGCACCACCGGCACTTCCGGGGGTCTCTTTGGCAACAACACCACCAACACC
GCCAACACCACCGCCAACACCGCAGGCAACACGTCTGGGGGTCTCTTTGGTGCTAAACCCGCGTC
TGGAGGCCTTTTTGGTGGCTCCACCGCCAACAACAACACCTCAGGCGGGCTCTTCGGGTCAAAAC
CCGCGGCCCTGGGGGGTCTTTTCGGCTCTACAACCACAGGCCAAC
Found at i:90012 original size:12 final size:12
Alignment explanation
Indices: 89997--90025 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
89987 CTTCGGCAAT
89997 ACCGGGGGCACC
1 ACCGGGGGCACC
90009 ACCGGGGGCACC
1 ACCGGGGGCACC
90021 ACCGG
1 ACCGG
90026 CACTTCCGGG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.17, C:0.41, G:0.41, T:0.00
Consensus pattern (12 bp):
ACCGGGGGCACC
Left flanking sequence: Indices 89497 -- 89996
CTCCTGGAGCCAACAAGGGGTTCTCCTTTGGCGGCGGCTCTTCCAACACCGCCAGCTCCGGTGGC
AACCTCTTCGGTGGCGCGTCCAACTCCACAGCGCCCGCGTCGGGTGGGCTTTTCGGCAACAACAA
CTCCTCGAACGCCTCCTCGGGAGGAGGCCTCTTTGGCAACAACAACTCCGGCACCTCCAATGCCT
CCTCCGGAGGAGGCCTCTTTGGCAGCAACAACAACACCACCAATGCCTCGAGCACCACCCAGTCC
GGGGGCCTCTTTGGCAACAACAATAACACCCTGGGCGGGTTTGGCGCCAACGCCAGCAAACCCGG
CCTTTTTGGTGGCGCCTCCAACACCACCACCAACGCTGCTCCCGCTCTGGGTGGGCTCTTTGGCA
ACAACGCCGCCAAGCCCGCCACCACCGGGTTCGGTGCCTCCTCCTCCACCACCAATTCCGGTGGT
CTCTTTGGCAACAAGCCCGCGGCGCTGGGGGGCCTCTTCGGCAAT
Right flanking sequence: Indices 90026 -- 90525
CACTTCCGGGGGTCTCTTTGGCAACAACACCACCAACACCGCCAACACCACCGCCAACACCGCAG
GCAACACGTCTGGGGGTCTCTTTGGTGCTAAACCCGCGTCTGGAGGCCTTTTTGGTGGCTCCACC
GCCAACAACAACACCTCAGGCGGGCTCTTCGGGTCAAAACCCGCGGCCCTGGGGGGTCTTTTCGG
CTCTACAACCACAGGCCAACAGCCGGCCCAGCCAGCAGCCCAGCAGTCCACCGGGCTCTTTGGCA
ACCTGGCTGCCAACAAAAACTCGACGGCTCCGCTGTATGCGTGGACCCAGCCCCCGGTGGCAGTA
GCCCAGCAGCCCACAGCGCTGGGGGGGACCACAGCGTCGGTCCACACCTACACCCCGGCGATCCA
CGACCAGCTCGTGAAAATCTCCGAGCAGTGGGACCCGCTGCTGGCCCGCTGTGTGATCAAAACCC
ACCTCTACAACAAGTTCACCGACGAGCAGATGGCGTACTTGATGG
Found at i:90077 original size:12 final size:12
Alignment explanation
Indices: 90062--90086 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
90052 ACACCACCAA
90062 CACCGCCAACAC
1 CACCGCCAACAC
90074 CACCGCCAACAC
1 CACCGCCAACAC
90086 C
1 C
90087 GCAGGCAACA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.60, G:0.08, T:0.00
Consensus pattern (12 bp):
CACCGCCAACAC
Left flanking sequence: Indices 89562 -- 90061
AACCTCTTCGGTGGCGCGTCCAACTCCACAGCGCCCGCGTCGGGTGGGCTTTTCGGCAACAACAA
CTCCTCGAACGCCTCCTCGGGAGGAGGCCTCTTTGGCAACAACAACTCCGGCACCTCCAATGCCT
CCTCCGGAGGAGGCCTCTTTGGCAGCAACAACAACACCACCAATGCCTCGAGCACCACCCAGTCC
GGGGGCCTCTTTGGCAACAACAATAACACCCTGGGCGGGTTTGGCGCCAACGCCAGCAAACCCGG
CCTTTTTGGTGGCGCCTCCAACACCACCACCAACGCTGCTCCCGCTCTGGGTGGGCTCTTTGGCA
ACAACGCCGCCAAGCCCGCCACCACCGGGTTCGGTGCCTCCTCCTCCACCACCAATTCCGGTGGT
CTCTTTGGCAACAAGCCCGCGGCGCTGGGGGGCCTCTTCGGCAATACCGGGGGCACCACCGGGGG
CACCACCGGCACTTCCGGGGGTCTCTTTGGCAACAACACCACCAA
Right flanking sequence: Indices 90087 -- 90586
GCAGGCAACACGTCTGGGGGTCTCTTTGGTGCTAAACCCGCGTCTGGAGGCCTTTTTGGTGGCTC
CACCGCCAACAACAACACCTCAGGCGGGCTCTTCGGGTCAAAACCCGCGGCCCTGGGGGGTCTTT
TCGGCTCTACAACCACAGGCCAACAGCCGGCCCAGCCAGCAGCCCAGCAGTCCACCGGGCTCTTT
GGCAACCTGGCTGCCAACAAAAACTCGACGGCTCCGCTGTATGCGTGGACCCAGCCCCCGGTGGC
AGTAGCCCAGCAGCCCACAGCGCTGGGGGGGACCACAGCGTCGGTCCACACCTACACCCCGGCGA
TCCACGACCAGCTCGTGAAAATCTCCGAGCAGTGGGACCCGCTGCTGGCCCGCTGTGTGATCAAA
ACCCACCTCTACAACAAGTTCACCGACGAGCAGATGGCGTACTTGATGGCCCAGCCACGGCCAGC
GCTGGAGACCCCCGAGGAGTGGGACGAGGCGATGGCACACCGTCC
Found at i:90077 original size:21 final size:21
Alignment explanation
Indices: 90047--90088 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
90037 GTCTCTTTGG
90047 CAACAACACCACCAACACCGC
1 CAACAACACCACCAACACCGC
* *
90068 CAACACCACCGCCAACACCGC
1 CAACAACACCACCAACACCGC
90089 AGGCAACACG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.38, C:0.55, G:0.07, T:0.00
Consensus pattern (21 bp):
CAACAACACCACCAACACCGC
Left flanking sequence: Indices 89547 -- 90046
GCCAGCTCCGGTGGCAACCTCTTCGGTGGCGCGTCCAACTCCACAGCGCCCGCGTCGGGTGGGCT
TTTCGGCAACAACAACTCCTCGAACGCCTCCTCGGGAGGAGGCCTCTTTGGCAACAACAACTCCG
GCACCTCCAATGCCTCCTCCGGAGGAGGCCTCTTTGGCAGCAACAACAACACCACCAATGCCTCG
AGCACCACCCAGTCCGGGGGCCTCTTTGGCAACAACAATAACACCCTGGGCGGGTTTGGCGCCAA
CGCCAGCAAACCCGGCCTTTTTGGTGGCGCCTCCAACACCACCACCAACGCTGCTCCCGCTCTGG
GTGGGCTCTTTGGCAACAACGCCGCCAAGCCCGCCACCACCGGGTTCGGTGCCTCCTCCTCCACC
ACCAATTCCGGTGGTCTCTTTGGCAACAAGCCCGCGGCGCTGGGGGGCCTCTTCGGCAATACCGG
GGGCACCACCGGGGGCACCACCGGCACTTCCGGGGGTCTCTTTGG
Right flanking sequence: Indices 90089 -- 90588
AGGCAACACGTCTGGGGGTCTCTTTGGTGCTAAACCCGCGTCTGGAGGCCTTTTTGGTGGCTCCA
CCGCCAACAACAACACCTCAGGCGGGCTCTTCGGGTCAAAACCCGCGGCCCTGGGGGGTCTTTTC
GGCTCTACAACCACAGGCCAACAGCCGGCCCAGCCAGCAGCCCAGCAGTCCACCGGGCTCTTTGG
CAACCTGGCTGCCAACAAAAACTCGACGGCTCCGCTGTATGCGTGGACCCAGCCCCCGGTGGCAG
TAGCCCAGCAGCCCACAGCGCTGGGGGGGACCACAGCGTCGGTCCACACCTACACCCCGGCGATC
CACGACCAGCTCGTGAAAATCTCCGAGCAGTGGGACCCGCTGCTGGCCCGCTGTGTGATCAAAAC
CCACCTCTACAACAAGTTCACCGACGAGCAGATGGCGTACTTGATGGCCCAGCCACGGCCAGCGC
TGGAGACCCCCGAGGAGTGGGACGAGGCGATGGCACACCGTCCTG
Found at i:91225 original size:23 final size:24
Alignment explanation
Indices: 91196--91251 Score: 87
Period size: 24 Copynumber: 2.4 Consensus size: 24
91186 TAGCGTAGGT
*
91196 TGTGTTTGGGG-TGTTTGTGGCGG
1 TGTGTTTGGGGATGTTTATGGCGG
91219 TGTGTTTGGGGATGTTTATGGCGG
1 TGTGTTTGGGGATGTTTATGGCGG
*
91243 TGTGGTTGG
1 TGTGTTTGG
91252 AGGTTGCAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
23 11 0.37
24 19 0.63
ACGTcount: A:0.04, C:0.04, G:0.50, T:0.43
Consensus pattern (24 bp):
TGTGTTTGGGGATGTTTATGGCGG
Left flanking sequence: Indices 90696 -- 91195
CTGGACCGCCAGGACCAGTTGCTGGCCAAGCACGACTTGGACAACGCCACCCGGCTCCAGCGGGC
GCGTGCCCGCCACACCACGCTTGAGCGGAGGCTTTTGAGGCTTGCCACGGTGTTGGCGGCGCTCA
AGTTGAAGGGGTACCCGCTTTTGCCCGAGGAAGAGGAGATTGCCCGCCAGTTTGACCGGTTGAAC
GCTCAGTTGACCAACACCCAGCTGCCGGTGGCTCGTATTCTGGACTTGCTGGCCCGGTTGGCGGT
GTTGAAGCAGCGGGCGGACGCGTTGAACCTGGAGTTGGACTCGCAGTTGGCTGAGGCCCCGGCGC
CGCCGGCCAAGGACGAGCCGCTGGCGCACGAGGTGGTGCCCAAGTTGACGCGGGTGTTATTGGAA
CAGCAGATCGGGTTGAACTATCTTAACGAGTTGGTGGAGAAGGACACGGTGGCGGTGAGTAAAAA
GTTGTGATAGAATAGATATTGATAATTCGGATGAGTAGCGTAGGT
Right flanking sequence: Indices 91252 -- 91751
AGGTTGCAAATTTCCCTTTTGGGACGGGTGGCGTGTTACAGCTGTGCGGGTGAGTGGAGGGGAGG
GGGAAGTTTTACGTTGGCCTTCTAGATGTTGAGGACTAGTTAGGATACCAGGGAGGGGTGTTCGT
TCTTTCAGTCAAAGGGAGTTCTTCACTGGCTACCAAAATGAGCGGGAAGCATTCGAATACTGCGG
AATGGTCACAAAAACGTCTCCACAGTTAGCTATAAACGCATATATTGAAGGTTTACAGCTGAAAG
CAAGTGGTCAGTTACCACCGTGTGGAGATAACTTGGAATCACAACGACTTGCTTTGGGGTAGATG
GCGTGTGTATACCACGTTTCTCAAAAAGTCGTGTCCCAGATAAATATGAACGTGCCCGAAAAACA
AAATTAGTCCTACATGCGAGTGCTCTAGCTGAAGCCTCCCTCACAAGACTGTAATCTCTTACCCT
CTTGTATGTGCAAGAATCCGTTTCGCGCGTATGTGGTGAGGGTAA
Found at i:97858 original size:14 final size:14
Alignment explanation
Indices: 97839--97867 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
97829 AATGCGTCAC
97839 AGGGCTGCGAACCG
1 AGGGCTGCGAACCG
97853 AGGGCTGCGAACCG
1 AGGGCTGCGAACCG
97867 A
1 A
97868 TAGGGAAGGG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.24, C:0.28, G:0.41, T:0.07
Consensus pattern (14 bp):
AGGGCTGCGAACCG
Left flanking sequence: Indices 97339 -- 97838
GGACCCCTCGGGAGAGCTCACACCCGGGATGGTAGCGGCCCACCGCGGAGCCTGCACCTTGACGT
CGTCGTAGAAGTCGCGGAACTCGCCCTTGCCAAACCGCAGCAGCTCTTTTTCCGCAACCACCGGG
TGGTTGGTGATGGTGTCGTTGACCGAGGCCAACACCGCCAAAAGGGCTTTGATCACCGGGGTGTC
GGCACAGCTGGGGTCGTTGTTGACCAAGCCCTCGGCCAGGTCCTGGAGGGCCTCGACGAACTCGA
CCACGAGGTTGTAGGTGGCCAGGTCGACCCACTTTTCGAGATCCTGTGGGGTGACGATTCGCTTC
TCGGGTATCATAGCGGGTACGGGGGAAATGTGTGTGAAAAATTGGTTGGGGTGAAACTTTGGGTG
GAATAGGGGGTGGCTGTGGGCTGGTTTGGTTCTGGAAGCCGGGGGTGGTGGTGGTGTTCGCTGTC
GAGGTTGTTGCAGTTGGCTCACGATTTGGAAGGCAAATGCGTCAC
Right flanking sequence: Indices 97868 -- 98367
TAGGGAAGGGATAGAAGGGTGGGAAGAAAGGGCGGTTAGGAGGCGAGTTAGGAGTACAAGGGGTT
TTATTGGGGTTGAGTGGGCTGGGTGTACGGTTTTCTTGTGTATTTTCTTGTCTAGGTAGATAGTT
TGGAAGGCCCCCTACAGTTTGCATTCCATGGCTATGACGTAATGGATAGTCACCACGTAAGACAA
CGCGTCAGCTGTTGACTAAAACAAATGAACCTTCAAGGAAGTGTTCACTGTAACCTCGTGATGTG
TTACAATACTCTCGCCCAAACATCAATGGCCCACAAACATTGACACAGACTGTAGACACACCAAC
TCTGACCACCCACCAACACCAACCGCAATGCCAACCATCAACACCAATACTACAAGCTAAACCCA
CTGACACCACCCCCACTACCCCACTACCAACACTACCAACACTACCAACACTACCACTACCACCC
CTACCAGATTCCACACCCCATCTCCACCCCTCACTCGACCTCTCC
Found at i:98291 original size:9 final size:9
Alignment explanation
Indices: 98279--98313 Score: 70
Period size: 9 Copynumber: 3.9 Consensus size: 9
98269 CCCACTACCC
98279 CACTACCAA
1 CACTACCAA
98288 CACTACCAA
1 CACTACCAA
98297 CACTACCAA
1 CACTACCAA
98306 CACTACCA
1 CACTACCA
98314 CTACCACCCC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.43, C:0.46, G:0.00, T:0.11
Consensus pattern (9 bp):
CACTACCAA
Left flanking sequence: Indices 97779 -- 98278
GTGGTGTTCGCTGTCGAGGTTGTTGCAGTTGGCTCACGATTTGGAAGGCAAATGCGTCACAGGGC
TGCGAACCGAGGGCTGCGAACCGATAGGGAAGGGATAGAAGGGTGGGAAGAAAGGGCGGTTAGGA
GGCGAGTTAGGAGTACAAGGGGTTTTATTGGGGTTGAGTGGGCTGGGTGTACGGTTTTCTTGTGT
ATTTTCTTGTCTAGGTAGATAGTTTGGAAGGCCCCCTACAGTTTGCATTCCATGGCTATGACGTA
ATGGATAGTCACCACGTAAGACAACGCGTCAGCTGTTGACTAAAACAAATGAACCTTCAAGGAAG
TGTTCACTGTAACCTCGTGATGTGTTACAATACTCTCGCCCAAACATCAATGGCCCACAAACATT
GACACAGACTGTAGACACACCAACTCTGACCACCCACCAACACCAACCGCAATGCCAACCATCAA
CACCAATACTACAAGCTAAACCCACTGACACCACCCCCACTACCC
Right flanking sequence: Indices 98314 -- 98813
CTACCACCCCTACCAGATTCCACACCCCATCTCCACCCCTCACTCGACCTCTCCCACGTGACCAC
CACCTCACGTGGATCGTTCCTTCTCCATACCACCACCATGTCCACCGACCCTTCGCCAGCGCCCA
GGCGCTCCGGACGCAACCGCCCGTCCCACCAGCAGTTCCAGGTGTACAAGTCCAAGGGCAAGGTG
GTTCTGAACATCATGGACCTCTTGCCGGGGCTCAACGACATCCTGGACGCGTTCGAGGCGTTACC
GTTGGATATCGTGAAATATTTCACCCTCTTGAAGGAGATCGATGCCAAGTGCATCAACACGGTGC
CCCAGATCAACACGCTCATTGAGCGATATGTGGCTGACCTCCACCGCAACGGGACTGTGGACGAT
GGGTTGAGCGAGGGCACAGAGCAAGGCTCGGAGCCAGCGACCGAGGCCAGTGAGCAGGCTGGGGG
GGCCGCTGACCAGCCAGACGAGTCAGCCACCGACTCCACTTCCGC
Found at i:98328 original size:15 final size:15
Alignment explanation
Indices: 98278--98319 Score: 57
Period size: 18 Copynumber: 2.6 Consensus size: 15
98268 CCCCACTACC
98278 CCACTACCAACACTA
1 CCACTACCAACACTA
98293 CCAACACTACCAACACTA
1 -C--CACTACCAACACTA
98311 CCACTACCA
1 CCACTACCA
98320 CCCCTACCAG
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
15 8 0.33
16 1 0.04
17 1 0.04
18 14 0.58
ACGTcount: A:0.40, C:0.48, G:0.00, T:0.12
Consensus pattern (15 bp):
CCACTACCAACACTA
Left flanking sequence: Indices 97778 -- 98277
GGTGGTGTTCGCTGTCGAGGTTGTTGCAGTTGGCTCACGATTTGGAAGGCAAATGCGTCACAGGG
CTGCGAACCGAGGGCTGCGAACCGATAGGGAAGGGATAGAAGGGTGGGAAGAAAGGGCGGTTAGG
AGGCGAGTTAGGAGTACAAGGGGTTTTATTGGGGTTGAGTGGGCTGGGTGTACGGTTTTCTTGTG
TATTTTCTTGTCTAGGTAGATAGTTTGGAAGGCCCCCTACAGTTTGCATTCCATGGCTATGACGT
AATGGATAGTCACCACGTAAGACAACGCGTCAGCTGTTGACTAAAACAAATGAACCTTCAAGGAA
GTGTTCACTGTAACCTCGTGATGTGTTACAATACTCTCGCCCAAACATCAATGGCCCACAAACAT
TGACACAGACTGTAGACACACCAACTCTGACCACCCACCAACACCAACCGCAATGCCAACCATCA
ACACCAATACTACAAGCTAAACCCACTGACACCACCCCCACTACC
Right flanking sequence: Indices 98320 -- 98819
CCCCTACCAGATTCCACACCCCATCTCCACCCCTCACTCGACCTCTCCCACGTGACCACCACCTC
ACGTGGATCGTTCCTTCTCCATACCACCACCATGTCCACCGACCCTTCGCCAGCGCCCAGGCGCT
CCGGACGCAACCGCCCGTCCCACCAGCAGTTCCAGGTGTACAAGTCCAAGGGCAAGGTGGTTCTG
AACATCATGGACCTCTTGCCGGGGCTCAACGACATCCTGGACGCGTTCGAGGCGTTACCGTTGGA
TATCGTGAAATATTTCACCCTCTTGAAGGAGATCGATGCCAAGTGCATCAACACGGTGCCCCAGA
TCAACACGCTCATTGAGCGATATGTGGCTGACCTCCACCGCAACGGGACTGTGGACGATGGGTTG
AGCGAGGGCACAGAGCAAGGCTCGGAGCCAGCGACCGAGGCCAGTGAGCAGGCTGGGGGGGCCGC
TGACCAGCCAGACGAGTCAGCCACCGACTCCACTTCCGCCAACAG
Found at i:101398 original size:19 final size:18
Alignment explanation
Indices: 101376--101428 Score: 61
Period size: 19 Copynumber: 2.8 Consensus size: 18
101366 CCTAGGGTGG
*
101376 TTACACACTACTAGGTTGC
1 TTACACAC-ACTAGGTTAC
* *
101395 TTACCCACAACTAGGTTAT
1 TTACACAC-ACTAGGTTAC
101414 TTACACACACTAGGT
1 TTACACACACTAGGT
101429 CGTTTATCTG
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
18 7 0.24
19 22 0.76
ACGTcount: A:0.30, C:0.26, G:0.13, T:0.30
Consensus pattern (18 bp):
TTACACACACTAGGTTAC
Left flanking sequence: Indices 100876 -- 101375
CAGCCACCACCGAGGGTGTAGGCCAACGAGTGACCCAAGTTGCCAATGAGGTTGAGGGCCCAGGG
GATAATGAAAAGACCCTCGGCCTGGGCCTCGGGAGCAGCAGCGGGGGCAGCCAGCACGGTGGCGG
CGATGGCAATGGCAGAGATGGCGGTGGAGAACTTCATTAGGGCTGGAGAAAAGCCAGAAACCCGA
GGAGGTATTTATAGTTGGGACGGCTACAAGGGTTCGGCAACCCAAGGCCACCCACGTTTGCCTGG
GTTCCCCTTTTGGGTGGGTTCTATGCTGAAAAAGGGTTTGCAGCCACAAAACGGCTCGTGTTTGT
GCTACTTCGTTAGACGATCAGCAAGGGGAGATCATGTAGAGAAGAAAGCAGGGGGGGAGGAAGCT
ACCGTTGAAGATAATACACAGATCACCTTGGGTTGGCTTTTGAGAAGACAAAATACTAGAGGAAT
ATGTACACTACTCCTTGTCGTATCGGGTGAGCGATCCTAGGGTGG
Right flanking sequence: Indices 101429 -- 101928
CGTTTATCTGCTGTTTGAGAGTATATTTTGAGTATATTCTCTCTTATTTTGGGCTTGGCGGGCGG
TCCCGTGTGATCGCGAACCTGCTCGAAGAGGGGCTATAGAGGGGCAATAGAAGGGCTACAGAGAG
GATGGCTGCAAAATCCCGAAGTGGCCAATTCACCACCAGGAGGCTGAACAGACACCACTTGTATT
TTACCGTATCTGGTTCATAGCTACCACTGTTTCTACCCCCTTTACCCGCCCGTTATCCGTAATCA
AACCGCCTCTCGAGCTGTCACAAAACCGCGACGGGTGCCCGATTGGGTCACCATTGCGAACACGA
GCAAGCCCGGTCCAGAGACTTAGACGACGGACACGGAGGGCTCGTGCCAGCGTCATTGTGCCACT
CTCATGTCCTAGTTGTCTCGTCAACCATCCCTCGGACTTATGAGCCCATTCGCCACAAAAGTAAG
GTTTAGCTAGACGAAGCAGGCTCAAGCAGGCTGAAGCAGGCTGAG
Found at i:101926 original size:10 final size:10
Alignment explanation
Indices: 101896--101944 Score: 64
Period size: 10 Copynumber: 5.0 Consensus size: 10
101886 TTAGCTAGAC
101896 GAAGCAGGCT
1 GAAGCAGGCT
*
101906 CAAGCAGGCT
1 GAAGCAGGCT
101916 GAAGCAGGCT
1 GAAGCAGGCT
*
101926 G-AGCAGGCC
1 GAAGCAGGCT
*
101935 GAAACAGGCT
1 GAAGCAGGCT
101945 CGGTAGAGCC
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
9 8 0.24
10 25 0.76
ACGTcount: A:0.31, C:0.24, G:0.37, T:0.08
Consensus pattern (10 bp):
GAAGCAGGCT
Left flanking sequence: Indices 101396 -- 101895
TACCCACAACTAGGTTATTTACACACACTAGGTCGTTTATCTGCTGTTTGAGAGTATATTTTGAG
TATATTCTCTCTTATTTTGGGCTTGGCGGGCGGTCCCGTGTGATCGCGAACCTGCTCGAAGAGGG
GCTATAGAGGGGCAATAGAAGGGCTACAGAGAGGATGGCTGCAAAATCCCGAAGTGGCCAATTCA
CCACCAGGAGGCTGAACAGACACCACTTGTATTTTACCGTATCTGGTTCATAGCTACCACTGTTT
CTACCCCCTTTACCCGCCCGTTATCCGTAATCAAACCGCCTCTCGAGCTGTCACAAAACCGCGAC
GGGTGCCCGATTGGGTCACCATTGCGAACACGAGCAAGCCCGGTCCAGAGACTTAGACGACGGAC
ACGGAGGGCTCGTGCCAGCGTCATTGTGCCACTCTCATGTCCTAGTTGTCTCGTCAACCATCCCT
CGGACTTATGAGCCCATTCGCCACAAAAGTAAGGTTTAGCTAGAC
Right flanking sequence: Indices 101945 -- 102444
CGGTAGAGCCATCGAGCGTTAGTTTAAACGCACTATTACCCTAAAGCCCACTTGGAATATAGGGC
CCTACGCACGCTGCGTAGCCGCGTCGTTTCAGCTATTTATAGGTCGGGTTAGGCAGACACTTTGT
CGTGAGCGACGGGGATCTGCAGGGTGATTGGCTGGTTCTTCTAGACTGTTCTGTGACGGTTCCAC
AGACGGTCATTGTTGCGTCGTCTCGGCTATGGTTGCAAAAGGAGTTATGGTGATAACTCCGGTCG
GGTCCCCGGTAAGTGCCTCGACCAACAAAACGCTACGCTTGTGACGAAAGCACTTGAACTACAGC
ATTTTTGACTACAGCACTTCCGACCGTGGCACTTTCCCGCCTCATCGCAGGCACAACCAGAGATC
CCCCTGGGCCACACCGCTCTCTTGGCACAGTGCCGATCTCGCAAAAATTAATGCTACAATTAATG
CTTCCGGACAGAGCTCTTACTGCGATTTGCGACGTAGGCCAGCCA
Found at i:101932 original size:19 final size:20
Alignment explanation
Indices: 101895--101945 Score: 68
Period size: 19 Copynumber: 2.6 Consensus size: 20
101885 TTTAGCTAGA
101895 CGAAGCAGGCTCAAGCAGGC
1 CGAAGCAGGCTCAAGCAGGC
* *
101915 TGAAGCAGGCT-GAGCAGGC
1 CGAAGCAGGCTCAAGCAGGC
*
101934 CGAAACAGGCTC
1 CGAAGCAGGCTC
101946 GGTAGAGCCA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
19 16 0.62
20 10 0.38
ACGTcount: A:0.29, C:0.27, G:0.35, T:0.08
Consensus pattern (20 bp):
CGAAGCAGGCTCAAGCAGGC
Left flanking sequence: Indices 101395 -- 101894
TTACCCACAACTAGGTTATTTACACACACTAGGTCGTTTATCTGCTGTTTGAGAGTATATTTTGA
GTATATTCTCTCTTATTTTGGGCTTGGCGGGCGGTCCCGTGTGATCGCGAACCTGCTCGAAGAGG
GGCTATAGAGGGGCAATAGAAGGGCTACAGAGAGGATGGCTGCAAAATCCCGAAGTGGCCAATTC
ACCACCAGGAGGCTGAACAGACACCACTTGTATTTTACCGTATCTGGTTCATAGCTACCACTGTT
TCTACCCCCTTTACCCGCCCGTTATCCGTAATCAAACCGCCTCTCGAGCTGTCACAAAACCGCGA
CGGGTGCCCGATTGGGTCACCATTGCGAACACGAGCAAGCCCGGTCCAGAGACTTAGACGACGGA
CACGGAGGGCTCGTGCCAGCGTCATTGTGCCACTCTCATGTCCTAGTTGTCTCGTCAACCATCCC
TCGGACTTATGAGCCCATTCGCCACAAAAGTAAGGTTTAGCTAGA
Right flanking sequence: Indices 101946 -- 102445
GGTAGAGCCATCGAGCGTTAGTTTAAACGCACTATTACCCTAAAGCCCACTTGGAATATAGGGCC
CTACGCACGCTGCGTAGCCGCGTCGTTTCAGCTATTTATAGGTCGGGTTAGGCAGACACTTTGTC
GTGAGCGACGGGGATCTGCAGGGTGATTGGCTGGTTCTTCTAGACTGTTCTGTGACGGTTCCACA
GACGGTCATTGTTGCGTCGTCTCGGCTATGGTTGCAAAAGGAGTTATGGTGATAACTCCGGTCGG
GTCCCCGGTAAGTGCCTCGACCAACAAAACGCTACGCTTGTGACGAAAGCACTTGAACTACAGCA
TTTTTGACTACAGCACTTCCGACCGTGGCACTTTCCCGCCTCATCGCAGGCACAACCAGAGATCC
CCCTGGGCCACACCGCTCTCTTGGCACAGTGCCGATCTCGCAAAAATTAATGCTACAATTAATGC
TTCCGGACAGAGCTCTTACTGCGATTTGCGACGTAGGCCAGCCAC
Found at i:103024 original size:14 final size:14
Alignment explanation
Indices: 102993--103079 Score: 108
Period size: 14 Copynumber: 6.4 Consensus size: 14
102983 AGCCGAGGGT
*
102993 CAGTAGGGCAG-GG
1 CAGTAGAGCAGAGG
*
103006 GAGTAGAGCAGAGG
1 CAGTAGAGCAGAGG
103020 CAGTAGAGCAGAGG
1 CAGTAGAGCAGAGG
103034 CAGT--AGCAGAGG
1 CAGTAGAGCAGAGG
103046 CAGTAGAGCAGAGG
1 CAGTAGAGCAGAGG
* *
103060 CTGTAGAACAGAGG
1 CAGTAGAGCAGAGG
*
103074 CTGTAG
1 CAGTAG
103080 CAGTGAAGCA
Statistics
Matches: 66, Mismatches: 5, Indels: 5
0.87 0.07 0.07
Matches are distributed among these distances:
12 12 0.18
13 9 0.14
14 45 0.68
ACGTcount: A:0.32, C:0.14, G:0.44, T:0.10
Consensus pattern (14 bp):
CAGTAGAGCAGAGG
Left flanking sequence: Indices 102493 -- 102992
TGTGGCTAGATGTGCCTGTTTGGGCCATTTTCACGTGAAGATTGAGAAAAGCAACGGACCGGTTA
AACGACGCTGCCGAAGCAATTCGCACATGTCCGTGCCACGGCAACCCTACGACGGCCCTGACGGC
CCTGGTGTTAGCGCCATCACCACCGGGAGACCCGTTGTAGCCCGGCCCCCTGGTGGTGCGGCAGA
TCTGGCGCACCTTCCGGCACTGACAGCAGGTGCGGTGCTGCCGTCACTGCGAACAATAGCACCGG
TGTGTAATTAGACGATGAGGGAAAAAGAGGTAGACAGAGGACAAAGACGAAGCAGGTAGTTAGTG
GGCACGACTGGGGCAGATCACCCATAGAGCCCTGGTTGCAAACACCATCGCAGCGGACAATGCAC
CAGCGCCAAGGATGCGAAGGTTTCGCGTAGCCTCGGCCCTGTAGCCGCTGCACGGACCCTGCCGT
AGGGCGCCTTGAACAGGACATGGATCTAGCCGGTGAGCCGAGGGT
Right flanking sequence: Indices 103080 -- 103579
CAGTGAAGCAGTAGAGATAAAGCAGTCATTCAGTCATTACTAAGGCAGGCATTGGCACGTAGGGG
ACGGCAACCCCAGAAGAGGCTTACGAGGTGGTGGCTATCGGAGGAGAAAGTGGTGTTGGAGGAGA
AAGTGGTGGAATTAGAGGGAAATTGGTGGAATTAGAGGAAAGTGGTGGCTATTGGTGGCTATTGG
AGGGGAACGTCGGGGCAAGTCATCGGGTCCACCAGCCGTGTGAAGTGGGCACACGGATTAGAGCA
GGTTTACGACCACCGCCGTGACCAACCCCACGATGTCGTCAAAAGCAACAGAGCCATTCGGCCAC
TTTCAAGTGATTTGCGGTGCCATGCAAGCCCTGTCCTTGAGCCCGGTAAAAAATACTGAAATAAT
ACCGGAGAAGGCCCGACACTAGGAGGTCACGGTGGTGCTGTGGCCGGGGTTACTGGGAGAGTGGT
GATGGTAGAGAGAAGATGTAGAGAGAAGAGGTAGAGAGAAGAGGT
Found at i:103047 original size:26 final size:26
Alignment explanation
Indices: 103012--103079 Score: 100
Period size: 26 Copynumber: 2.5 Consensus size: 26
103002 AGGGGAGTAG
103012 AGCAGAGGCAGTAGAGCAGAGGCAGT
1 AGCAGAGGCAGTAGAGCAGAGGCAGT
*
103038 AGCAGAGGCAGTAGAGCAGAGGCTGT
1 AGCAGAGGCAGTAGAGCAGAGGCAGT
*
103064 AGAACAGAGGCTGTAG
1 AG--CAGAGGCAGTAG
103080 CAGTGAAGCA
Statistics
Matches: 38, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
26 27 0.71
28 11 0.29
ACGTcount: A:0.34, C:0.15, G:0.41, T:0.10
Consensus pattern (26 bp):
AGCAGAGGCAGTAGAGCAGAGGCAGT
Left flanking sequence: Indices 102512 -- 103011
TTGGGCCATTTTCACGTGAAGATTGAGAAAAGCAACGGACCGGTTAAACGACGCTGCCGAAGCAA
TTCGCACATGTCCGTGCCACGGCAACCCTACGACGGCCCTGACGGCCCTGGTGTTAGCGCCATCA
CCACCGGGAGACCCGTTGTAGCCCGGCCCCCTGGTGGTGCGGCAGATCTGGCGCACCTTCCGGCA
CTGACAGCAGGTGCGGTGCTGCCGTCACTGCGAACAATAGCACCGGTGTGTAATTAGACGATGAG
GGAAAAAGAGGTAGACAGAGGACAAAGACGAAGCAGGTAGTTAGTGGGCACGACTGGGGCAGATC
ACCCATAGAGCCCTGGTTGCAAACACCATCGCAGCGGACAATGCACCAGCGCCAAGGATGCGAAG
GTTTCGCGTAGCCTCGGCCCTGTAGCCGCTGCACGGACCCTGCCGTAGGGCGCCTTGAACAGGAC
ATGGATCTAGCCGGTGAGCCGAGGGTCAGTAGGGCAGGGGAGTAG
Right flanking sequence: Indices 103080 -- 103579
CAGTGAAGCAGTAGAGATAAAGCAGTCATTCAGTCATTACTAAGGCAGGCATTGGCACGTAGGGG
ACGGCAACCCCAGAAGAGGCTTACGAGGTGGTGGCTATCGGAGGAGAAAGTGGTGTTGGAGGAGA
AAGTGGTGGAATTAGAGGGAAATTGGTGGAATTAGAGGAAAGTGGTGGCTATTGGTGGCTATTGG
AGGGGAACGTCGGGGCAAGTCATCGGGTCCACCAGCCGTGTGAAGTGGGCACACGGATTAGAGCA
GGTTTACGACCACCGCCGTGACCAACCCCACGATGTCGTCAAAAGCAACAGAGCCATTCGGCCAC
TTTCAAGTGATTTGCGGTGCCATGCAAGCCCTGTCCTTGAGCCCGGTAAAAAATACTGAAATAAT
ACCGGAGAAGGCCCGACACTAGGAGGTCACGGTGGTGCTGTGGCCGGGGTTACTGGGAGAGTGGT
GATGGTAGAGAGAAGATGTAGAGAGAAGAGGTAGAGAGAAGAGGT
Found at i:103052 original size:40 final size:40
Alignment explanation
Indices: 103007--103082 Score: 125
Period size: 40 Copynumber: 1.9 Consensus size: 40
102997 AGGGCAGGGG
*
103007 AGTAGAGCAGAGGCAGTAGAGCAGAGGCAGTAGCAGAGGC
1 AGTAGAGCAGAGGCAGTAGAACAGAGGCAGTAGCAGAGGC
* *
103047 AGTAGAGCAGAGGCTGTAGAACAGAGGCTGTAGCAG
1 AGTAGAGCAGAGGCAGTAGAACAGAGGCAGTAGCAG
103083 TGAAGCAGTA
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 33 1.00
ACGTcount: A:0.34, C:0.14, G:0.41, T:0.11
Consensus pattern (40 bp):
AGTAGAGCAGAGGCAGTAGAACAGAGGCAGTAGCAGAGGC
Left flanking sequence: Indices 102507 -- 103006
CCTGTTTGGGCCATTTTCACGTGAAGATTGAGAAAAGCAACGGACCGGTTAAACGACGCTGCCGA
AGCAATTCGCACATGTCCGTGCCACGGCAACCCTACGACGGCCCTGACGGCCCTGGTGTTAGCGC
CATCACCACCGGGAGACCCGTTGTAGCCCGGCCCCCTGGTGGTGCGGCAGATCTGGCGCACCTTC
CGGCACTGACAGCAGGTGCGGTGCTGCCGTCACTGCGAACAATAGCACCGGTGTGTAATTAGACG
ATGAGGGAAAAAGAGGTAGACAGAGGACAAAGACGAAGCAGGTAGTTAGTGGGCACGACTGGGGC
AGATCACCCATAGAGCCCTGGTTGCAAACACCATCGCAGCGGACAATGCACCAGCGCCAAGGATG
CGAAGGTTTCGCGTAGCCTCGGCCCTGTAGCCGCTGCACGGACCCTGCCGTAGGGCGCCTTGAAC
AGGACATGGATCTAGCCGGTGAGCCGAGGGTCAGTAGGGCAGGGG
Right flanking sequence: Indices 103083 -- 103582
TGAAGCAGTAGAGATAAAGCAGTCATTCAGTCATTACTAAGGCAGGCATTGGCACGTAGGGGACG
GCAACCCCAGAAGAGGCTTACGAGGTGGTGGCTATCGGAGGAGAAAGTGGTGTTGGAGGAGAAAG
TGGTGGAATTAGAGGGAAATTGGTGGAATTAGAGGAAAGTGGTGGCTATTGGTGGCTATTGGAGG
GGAACGTCGGGGCAAGTCATCGGGTCCACCAGCCGTGTGAAGTGGGCACACGGATTAGAGCAGGT
TTACGACCACCGCCGTGACCAACCCCACGATGTCGTCAAAAGCAACAGAGCCATTCGGCCACTTT
CAAGTGATTTGCGGTGCCATGCAAGCCCTGTCCTTGAGCCCGGTAAAAAATACTGAAATAATACC
GGAGAAGGCCCGACACTAGGAGGTCACGGTGGTGCTGTGGCCGGGGTTACTGGGAGAGTGGTGAT
GGTAGAGAGAAGATGTAGAGAGAAGAGGTAGAGAGAAGAGGTGTT
Found at i:103081 original size:26 final size:26
Alignment explanation
Indices: 103007--103082 Score: 84
Period size: 26 Copynumber: 2.8 Consensus size: 26
102997 AGGGCAGGGG
103007 AGTAGAGCAGAGGCAGTAGAGCAGAGGC
1 AGTAGA-CAGAGGCAGTA-AGCAGAGGC
103035 AGTAG-CAGAGGCAGTAGAGCAGAGGC
1 AGTAGACAGAGGCAGTA-AGCAGAGGC
* *
103061 TGTAGAACAGAGGCTGT-AGCAG
1 AGTAG-ACAGAGGCAGTAAGCAG
103083 TGAAGCAGTA
Statistics
Matches: 44, Mismatches: 2, Indels: 6
0.85 0.04 0.12
Matches are distributed among these distances:
26 30 0.68
28 14 0.32
ACGTcount: A:0.34, C:0.14, G:0.41, T:0.11
Consensus pattern (26 bp):
AGTAGACAGAGGCAGTAAGCAGAGGC
Left flanking sequence: Indices 102507 -- 103006
CCTGTTTGGGCCATTTTCACGTGAAGATTGAGAAAAGCAACGGACCGGTTAAACGACGCTGCCGA
AGCAATTCGCACATGTCCGTGCCACGGCAACCCTACGACGGCCCTGACGGCCCTGGTGTTAGCGC
CATCACCACCGGGAGACCCGTTGTAGCCCGGCCCCCTGGTGGTGCGGCAGATCTGGCGCACCTTC
CGGCACTGACAGCAGGTGCGGTGCTGCCGTCACTGCGAACAATAGCACCGGTGTGTAATTAGACG
ATGAGGGAAAAAGAGGTAGACAGAGGACAAAGACGAAGCAGGTAGTTAGTGGGCACGACTGGGGC
AGATCACCCATAGAGCCCTGGTTGCAAACACCATCGCAGCGGACAATGCACCAGCGCCAAGGATG
CGAAGGTTTCGCGTAGCCTCGGCCCTGTAGCCGCTGCACGGACCCTGCCGTAGGGCGCCTTGAAC
AGGACATGGATCTAGCCGGTGAGCCGAGGGTCAGTAGGGCAGGGG
Right flanking sequence: Indices 103083 -- 103582
TGAAGCAGTAGAGATAAAGCAGTCATTCAGTCATTACTAAGGCAGGCATTGGCACGTAGGGGACG
GCAACCCCAGAAGAGGCTTACGAGGTGGTGGCTATCGGAGGAGAAAGTGGTGTTGGAGGAGAAAG
TGGTGGAATTAGAGGGAAATTGGTGGAATTAGAGGAAAGTGGTGGCTATTGGTGGCTATTGGAGG
GGAACGTCGGGGCAAGTCATCGGGTCCACCAGCCGTGTGAAGTGGGCACACGGATTAGAGCAGGT
TTACGACCACCGCCGTGACCAACCCCACGATGTCGTCAAAAGCAACAGAGCCATTCGGCCACTTT
CAAGTGATTTGCGGTGCCATGCAAGCCCTGTCCTTGAGCCCGGTAAAAAATACTGAAATAATACC
GGAGAAGGCCCGACACTAGGAGGTCACGGTGGTGCTGTGGCCGGGGTTACTGGGAGAGTGGTGAT
GGTAGAGAGAAGATGTAGAGAGAAGAGGTAGAGAGAAGAGGTGTT
Found at i:103255 original size:19 final size:20
Alignment explanation
Indices: 103203--103257 Score: 85
Period size: 20 Copynumber: 2.8 Consensus size: 20
103193 AGTGGTGTTG
103203 GAGGAGAAAGTGGTGGAATTA
1 GAGG-GAAAGTGGTGGAATTA
*
103224 GAGGGAAATTGGTGGAATTA
1 GAGGGAAAGTGGTGGAATTA
103244 GA-GGAAAGTGGTGG
1 GAGGGAAAGTGGTGG
103258 CTATTGGTGG
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
19 11 0.34
20 17 0.53
21 4 0.12
ACGTcount: A:0.35, C:0.00, G:0.45, T:0.20
Consensus pattern (20 bp):
GAGGGAAAGTGGTGGAATTA
Left flanking sequence: Indices 102703 -- 103202
GGCACTGACAGCAGGTGCGGTGCTGCCGTCACTGCGAACAATAGCACCGGTGTGTAATTAGACGA
TGAGGGAAAAAGAGGTAGACAGAGGACAAAGACGAAGCAGGTAGTTAGTGGGCACGACTGGGGCA
GATCACCCATAGAGCCCTGGTTGCAAACACCATCGCAGCGGACAATGCACCAGCGCCAAGGATGC
GAAGGTTTCGCGTAGCCTCGGCCCTGTAGCCGCTGCACGGACCCTGCCGTAGGGCGCCTTGAACA
GGACATGGATCTAGCCGGTGAGCCGAGGGTCAGTAGGGCAGGGGAGTAGAGCAGAGGCAGTAGAG
CAGAGGCAGTAGCAGAGGCAGTAGAGCAGAGGCTGTAGAACAGAGGCTGTAGCAGTGAAGCAGTA
GAGATAAAGCAGTCATTCAGTCATTACTAAGGCAGGCATTGGCACGTAGGGGACGGCAACCCCAG
AAGAGGCTTACGAGGTGGTGGCTATCGGAGGAGAAAGTGGTGTTG
Right flanking sequence: Indices 103258 -- 103757
CTATTGGTGGCTATTGGAGGGGAACGTCGGGGCAAGTCATCGGGTCCACCAGCCGTGTGAAGTGG
GCACACGGATTAGAGCAGGTTTACGACCACCGCCGTGACCAACCCCACGATGTCGTCAAAAGCAA
CAGAGCCATTCGGCCACTTTCAAGTGATTTGCGGTGCCATGCAAGCCCTGTCCTTGAGCCCGGTA
AAAAATACTGAAATAATACCGGAGAAGGCCCGACACTAGGAGGTCACGGTGGTGCTGTGGCCGGG
GTTACTGGGAGAGTGGTGATGGTAGAGAGAAGATGTAGAGAGAAGAGGTAGAGAGAAGAGGTGTT
GTGGTGTGGTGTTGTGGTGGGTGGAAGGTGGATTGATTATGGGTTGGTTGCGAACGTTTCGTTCA
GTTGTTGCTTCTGTTATTGTAGTTATTATCTGATCGCTCAATTCCCTGTTGGGTGCTCGTCACAT
TCCATCTAAGTGCCAATTATCTCGGTGGTGTAGATCTTTACTAAA
Found at i:103572 original size:15 final size:13
Alignment explanation
Indices: 103538--103579 Score: 75
Period size: 13 Copynumber: 3.2 Consensus size: 13
103528 GAGTGGTGAT
103538 GGTAGAGAGAAGA
1 GGTAGAGAGAAGA
*
103551 TGTAGAGAGAAGA
1 GGTAGAGAGAAGA
103564 GGTAGAGAGAAGA
1 GGTAGAGAGAAGA
103577 GGT
1 GGT
103580 GTTGTGGTGT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
13 27 1.00
ACGTcount: A:0.43, C:0.00, G:0.45, T:0.12
Consensus pattern (13 bp):
GGTAGAGAGAAGA
Left flanking sequence: Indices 103038 -- 103537
AGCAGAGGCAGTAGAGCAGAGGCTGTAGAACAGAGGCTGTAGCAGTGAAGCAGTAGAGATAAAGC
AGTCATTCAGTCATTACTAAGGCAGGCATTGGCACGTAGGGGACGGCAACCCCAGAAGAGGCTTA
CGAGGTGGTGGCTATCGGAGGAGAAAGTGGTGTTGGAGGAGAAAGTGGTGGAATTAGAGGGAAAT
TGGTGGAATTAGAGGAAAGTGGTGGCTATTGGTGGCTATTGGAGGGGAACGTCGGGGCAAGTCAT
CGGGTCCACCAGCCGTGTGAAGTGGGCACACGGATTAGAGCAGGTTTACGACCACCGCCGTGACC
AACCCCACGATGTCGTCAAAAGCAACAGAGCCATTCGGCCACTTTCAAGTGATTTGCGGTGCCAT
GCAAGCCCTGTCCTTGAGCCCGGTAAAAAATACTGAAATAATACCGGAGAAGGCCCGACACTAGG
AGGTCACGGTGGTGCTGTGGCCGGGGTTACTGGGAGAGTGGTGAT
Right flanking sequence: Indices 103580 -- 104079
GTTGTGGTGTGGTGTTGTGGTGGGTGGAAGGTGGATTGATTATGGGTTGGTTGCGAACGTTTCGT
TCAGTTGTTGCTTCTGTTATTGTAGTTATTATCTGATCGCTCAATTCCCTGTTGGGTGCTCGTCA
CATTCCATCTAAGTGCCAATTATCTCGGTGGTGTAGATCTTTACTAAAAGGGCCATCCAATACGG
CACGGCCACTCGTATAGGTGCTCGGCAAATTGACCAGGTGCGCTGCCATCGTCTGGGTACACGCA
ACCGATCGTCTGGTTACGGGCCAATCGTCTGGATTTCGCCCGGCTCGGTCAATTGGTCTAGAACG
GGCTAGTATTGTTAGCGCTTAGCTCACCGACACTACATTCCACTCACGATACTCCACTATACTGT
ATTCCACTCACTTATTCTCAACCACACCCACTAATCCACTCCTACTACACTCCTACTATCCACTA
CTATCCACTCCAATTGACTCCAACTGCATCCTCTCTCCGTCCTTT
Found at i:104535 original size:12 final size:12
Alignment explanation
Indices: 104517--104563 Score: 67
Period size: 12 Copynumber: 3.8 Consensus size: 12
104507 CAGCCATCCA
104517 CTCTGCTCCCTC
1 CTCTGCTCCCTC
*
104529 TTCTGCTCCCTC
1 CTCTGCTCCCTC
104541 CTCTGCTCCCTAC
1 CTCTGCTCCCT-C
*
104554 CACTGCTCCC
1 CTCTGCTCCC
104564 AACCACTGCT
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
12 21 0.68
13 10 0.32
ACGTcount: A:0.04, C:0.55, G:0.09, T:0.32
Consensus pattern (12 bp):
CTCTGCTCCCTC
Left flanking sequence: Indices 104017 -- 104516
CACTCCTACTATCCACTACTATCCACTCCAATTGACTCCAACTGCATCCTCTCTCCGTCCTTTCT
GTGTCACAATGTGCCCGTGTCGATCTTCACCTCTCGCGCCTCCACCCTTCTCACACCTCACCTTC
TCGCCTCCACTTTGCCGCCTCCATTACCTCACCTCGCAGTGGCTAAATGCCTCACTACCCCATCG
GCCTACCTCCCTCTCTTTCACCCCTCCCCCTTTCTCCTACCTCCACCATCTCCTCTCACACCACC
CTACGCGTCTGCTCGTGTGCTGTCGCGGTGACGTCGCACCGCCTCAAAAATTTTCTATTGTGCGC
GGCTAAAAACTACGGCATCGTCGCTGGGCTAGTGGACAGTCGGCGGTGCCAAAAAATAACGCGCG
TGGTGCAACCCCACCGCACCAGCACCAGAAGCACAGTGGCCTGCTCCACAACCCCCACCATCTCC
CTCTGCTGCGCCCACAAAACCACCAAACAAACCGCCAGCCATCCA
Right flanking sequence: Indices 104564 -- 105063
AACCACTGCTCCCCCTGTCCCCCACTCTTCCCTCTCCTCTCCCTCCTCTCCCGTCCTCCCCTCCC
CACCGAATTACACAGCAACGGCGCCCACCCGCCGATATTTTCTGGTTGCGCACCTCGCAAGTAAA
TTTCAAGTCGACGGCGCGGGTACAAATAGCACTGAGTGCGGACGAAAAACAATCTTCACCTCTGC
GCACCCCGGAGCACCCTCGAGCACACCCCCGTTCGAGTCACTGAGCGATGTTGAAGGAATACAAA
CTAGTGGTTGTGGGCGGCGGCGGCGTCGGCAAGCTGGCGTTGACGATCCAGCTCATCCAGCTGCA
CTTTGTCGACGAGTACGACCCCACCATCGAGGACCTGTACCGCAAGCAGTGCACCATCGACGACG
ACCAGGTGTTGCTCGATGTGCTCGACACCGCCGGGCAGGAGGAGTACCTGGCAATGCGCGAGCAG
TACATGCGCACCGGCGAGGGGTTTCTTCTAGTGTACCTGATCAAC
Found at i:104561 original size:13 final size:13
Alignment explanation
Indices: 104531--104576 Score: 67
Period size: 13 Copynumber: 3.6 Consensus size: 13
104521 GCTCCCTCTT
*
104531 CTGCTCCCT-CCT
1 CTGCTCCCTACCA
104543 CTGCTCCCTACCA
1 CTGCTCCCTACCA
*
104556 CTGCTCCCAACCA
1 CTGCTCCCTACCA
104569 CTGCTCCC
1 CTGCTCCC
104577 CCTGTCCCCC
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
12 9 0.29
13 22 0.71
ACGTcount: A:0.11, C:0.57, G:0.09, T:0.24
Consensus pattern (13 bp):
CTGCTCCCTACCA
Left flanking sequence: Indices 104031 -- 104530
ACTACTATCCACTCCAATTGACTCCAACTGCATCCTCTCTCCGTCCTTTCTGTGTCACAATGTGC
CCGTGTCGATCTTCACCTCTCGCGCCTCCACCCTTCTCACACCTCACCTTCTCGCCTCCACTTTG
CCGCCTCCATTACCTCACCTCGCAGTGGCTAAATGCCTCACTACCCCATCGGCCTACCTCCCTCT
CTTTCACCCCTCCCCCTTTCTCCTACCTCCACCATCTCCTCTCACACCACCCTACGCGTCTGCTC
GTGTGCTGTCGCGGTGACGTCGCACCGCCTCAAAAATTTTCTATTGTGCGCGGCTAAAAACTACG
GCATCGTCGCTGGGCTAGTGGACAGTCGGCGGTGCCAAAAAATAACGCGCGTGGTGCAACCCCAC
CGCACCAGCACCAGAAGCACAGTGGCCTGCTCCACAACCCCCACCATCTCCCTCTGCTGCGCCCA
CAAAACCACCAAACAAACCGCCAGCCATCCACTCTGCTCCCTCTT
Right flanking sequence: Indices 104577 -- 105076
CCTGTCCCCCACTCTTCCCTCTCCTCTCCCTCCTCTCCCGTCCTCCCCTCCCCACCGAATTACAC
AGCAACGGCGCCCACCCGCCGATATTTTCTGGTTGCGCACCTCGCAAGTAAATTTCAAGTCGACG
GCGCGGGTACAAATAGCACTGAGTGCGGACGAAAAACAATCTTCACCTCTGCGCACCCCGGAGCA
CCCTCGAGCACACCCCCGTTCGAGTCACTGAGCGATGTTGAAGGAATACAAACTAGTGGTTGTGG
GCGGCGGCGGCGTCGGCAAGCTGGCGTTGACGATCCAGCTCATCCAGCTGCACTTTGTCGACGAG
TACGACCCCACCATCGAGGACCTGTACCGCAAGCAGTGCACCATCGACGACGACCAGGTGTTGCT
CGATGTGCTCGACACCGCCGGGCAGGAGGAGTACCTGGCAATGCGCGAGCAGTACATGCGCACCG
GCGAGGGGTTTCTTCTAGTGTACCTGATCAACTCCCGCAACCTGT
Found at i:105318 original size:3 final size:3
Alignment explanation
Indices: 105312--105350 Score: 51
Period size: 3 Copynumber: 13.0 Consensus size: 3
105302 GTGACGACGG
* * *
105312 GGC GGC GGC GGC GGC GGC GGC GCC CGC GGC GGT GGC GGC
1 GGC GGC GGC GGC GGC GGC GGC GGC GGC GGC GGC GGC GGC
105351 CCCGGTGGCG
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.00, C:0.36, G:0.62, T:0.03
Consensus pattern (3 bp):
GGC
Left flanking sequence: Indices 104812 -- 105311
AAGGAATACAAACTAGTGGTTGTGGGCGGCGGCGGCGTCGGCAAGCTGGCGTTGACGATCCAGCT
CATCCAGCTGCACTTTGTCGACGAGTACGACCCCACCATCGAGGACCTGTACCGCAAGCAGTGCA
CCATCGACGACGACCAGGTGTTGCTCGATGTGCTCGACACCGCCGGGCAGGAGGAGTACCTGGCA
ATGCGCGAGCAGTACATGCGCACCGGCGAGGGGTTTCTTCTAGTGTACCTGATCAACTCCCGCAA
CCTGTTGGAGGAGTTGGCGGCGTTCTACGAGCAGATTTTGCGGGTCAAGGACGCGGACCTGGTGC
CGGTGCTTGTGGTGGGCAACAAGTGCGACCTCGAGATCGAGCGCCAGGTGCTGTTTGAGGAGGGC
CAGGCGCTCGCCAAGCGGTTCGGGTGCAAGTTTTTGGAGACCCTGGCCAAGCAGCGCATCAACGT
CGAGGAGGCGTTCTTTGACTTGGTGCGGCTGATCCGTGACGACGG
Right flanking sequence: Indices 105351 -- 105850
CCCGGTGGCGGCCCTGCTGGCGGAGCCGGTGCCCGCGGCCGCGCCCCAGGCGCCCCCCGCGGCGG
AGGCCCCCGCGGCGGAGGAGCCCGCGAAGGAGGCGCGCCCCCAGAAGCGCAAGGAGCAGGCGGCG
GCGCCCGCGGCCGAGCCCAAGGAGAAGTCGGGGTGCTGTGTGATTGTGTAGCGGGGGAGGCACTG
AGCTGGCGTCCCGGTTAATAATACTGTTTATGTTAAGGCATGGAATTAGAGAATGAGGGTGTGGT
TGGTGTGGGTAGTTGGTGTGTGTGTATGTGTTGTGGTGTGGGTGTGCTGTTGGGGTATTTGTCTG
GCTGGTGTATTTGCCTGGCTGGTGTGGATGTTTCGTTGGTGGTGTGATTGTAGTTGGTTAGCTTT
TGTAGCTGGTTGCTTATTGTAGCTGGTTGGCTATTGTGTTGGTGTATTCTCTGTTCGGGTGAGTG
TGGGTTGGTGAGCTGGGCAGGTGAGTGTAGGATGTTAAGAGTGAG
Found at i:105361 original size:18 final size:18
Alignment explanation
Indices: 105319--105354 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
105309 CGGGGCGGCG
105319 GCGGCGGCGGCGGCGCCC
1 GCGGCGGCGGCGGCGCCC
*
105337 GCGGCGGTGGCGGC-CCC
1 GCGGCGGCGGCGGCGCCC
105354 G
1 G
105355 GTGGCGGCCC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 4 0.24
18 13 0.76
ACGTcount: A:0.00, C:0.42, G:0.56, T:0.03
Consensus pattern (18 bp):
GCGGCGGCGGCGGCGCCC
Left flanking sequence: Indices 104819 -- 105318
ACAAACTAGTGGTTGTGGGCGGCGGCGGCGTCGGCAAGCTGGCGTTGACGATCCAGCTCATCCAG
CTGCACTTTGTCGACGAGTACGACCCCACCATCGAGGACCTGTACCGCAAGCAGTGCACCATCGA
CGACGACCAGGTGTTGCTCGATGTGCTCGACACCGCCGGGCAGGAGGAGTACCTGGCAATGCGCG
AGCAGTACATGCGCACCGGCGAGGGGTTTCTTCTAGTGTACCTGATCAACTCCCGCAACCTGTTG
GAGGAGTTGGCGGCGTTCTACGAGCAGATTTTGCGGGTCAAGGACGCGGACCTGGTGCCGGTGCT
TGTGGTGGGCAACAAGTGCGACCTCGAGATCGAGCGCCAGGTGCTGTTTGAGGAGGGCCAGGCGC
TCGCCAAGCGGTTCGGGTGCAAGTTTTTGGAGACCCTGGCCAAGCAGCGCATCAACGTCGAGGAG
GCGTTCTTTGACTTGGTGCGGCTGATCCGTGACGACGGGGCGGCG
Right flanking sequence: Indices 105355 -- 105854
GTGGCGGCCCTGCTGGCGGAGCCGGTGCCCGCGGCCGCGCCCCAGGCGCCCCCCGCGGCGGAGGC
CCCCGCGGCGGAGGAGCCCGCGAAGGAGGCGCGCCCCCAGAAGCGCAAGGAGCAGGCGGCGGCGC
CCGCGGCCGAGCCCAAGGAGAAGTCGGGGTGCTGTGTGATTGTGTAGCGGGGGAGGCACTGAGCT
GGCGTCCCGGTTAATAATACTGTTTATGTTAAGGCATGGAATTAGAGAATGAGGGTGTGGTTGGT
GTGGGTAGTTGGTGTGTGTGTATGTGTTGTGGTGTGGGTGTGCTGTTGGGGTATTTGTCTGGCTG
GTGTATTTGCCTGGCTGGTGTGGATGTTTCGTTGGTGGTGTGATTGTAGTTGGTTAGCTTTTGTA
GCTGGTTGCTTATTGTAGCTGGTTGGCTATTGTGTTGGTGTATTCTCTGTTCGGGTGAGTGTGGG
TTGGTGAGCTGGGCAGGTGAGTGTAGGATGTTAAGAGTGAGTTGG
Found at i:105424 original size:15 final size:15
Alignment explanation
Indices: 105404--105433 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
105394 CCCCAGGCGC
105404 CCCCCGCGGCGGAGG
1 CCCCCGCGGCGGAGG
105419 CCCCCGCGGCGGAGG
1 CCCCCGCGGCGGAGG
105434 AGCCCGCGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.07, C:0.47, G:0.47, T:0.00
Consensus pattern (15 bp):
CCCCCGCGGCGGAGG
Left flanking sequence: Indices 104904 -- 105403
CGACCCCACCATCGAGGACCTGTACCGCAAGCAGTGCACCATCGACGACGACCAGGTGTTGCTCG
ATGTGCTCGACACCGCCGGGCAGGAGGAGTACCTGGCAATGCGCGAGCAGTACATGCGCACCGGC
GAGGGGTTTCTTCTAGTGTACCTGATCAACTCCCGCAACCTGTTGGAGGAGTTGGCGGCGTTCTA
CGAGCAGATTTTGCGGGTCAAGGACGCGGACCTGGTGCCGGTGCTTGTGGTGGGCAACAAGTGCG
ACCTCGAGATCGAGCGCCAGGTGCTGTTTGAGGAGGGCCAGGCGCTCGCCAAGCGGTTCGGGTGC
AAGTTTTTGGAGACCCTGGCCAAGCAGCGCATCAACGTCGAGGAGGCGTTCTTTGACTTGGTGCG
GCTGATCCGTGACGACGGGGCGGCGGCGGCGGCGGCGGCGCCCGCGGCGGTGGCGGCCCCGGTGG
CGGCCCTGCTGGCGGAGCCGGTGCCCGCGGCCGCGCCCCAGGCGC
Right flanking sequence: Indices 105434 -- 105933
AGCCCGCGAAGGAGGCGCGCCCCCAGAAGCGCAAGGAGCAGGCGGCGGCGCCCGCGGCCGAGCCC
AAGGAGAAGTCGGGGTGCTGTGTGATTGTGTAGCGGGGGAGGCACTGAGCTGGCGTCCCGGTTAA
TAATACTGTTTATGTTAAGGCATGGAATTAGAGAATGAGGGTGTGGTTGGTGTGGGTAGTTGGTG
TGTGTGTATGTGTTGTGGTGTGGGTGTGCTGTTGGGGTATTTGTCTGGCTGGTGTATTTGCCTGG
CTGGTGTGGATGTTTCGTTGGTGGTGTGATTGTAGTTGGTTAGCTTTTGTAGCTGGTTGCTTATT
GTAGCTGGTTGGCTATTGTGTTGGTGTATTCTCTGTTCGGGTGAGTGTGGGTTGGTGAGCTGGGC
AGGTGAGTGTAGGATGTTAAGAGTGAGTTGGTGAGCGTATGCTTGTTAATTGTAAGATGATGTCA
ATATCGCAGCTGGTGTCCTCTGGGTGATATGTTAGTAGCCTTCCA
Found at i:105439 original size:15 final size:15
Alignment explanation
Indices: 105405--105441 Score: 56
Period size: 15 Copynumber: 2.5 Consensus size: 15
105395 CCCAGGCGCC
*
105405 CCCCGCGGCGGAGGC
1 CCCCGCGGCGGAGGA
105420 CCCCGCGGCGGAGGA
1 CCCCGCGGCGGAGGA
*
105435 GCCCGCG
1 CCCCGCG
105442 AAGGAGGCGC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.08, C:0.46, G:0.46, T:0.00
Consensus pattern (15 bp):
CCCCGCGGCGGAGGA
Left flanking sequence: Indices 104905 -- 105404
GACCCCACCATCGAGGACCTGTACCGCAAGCAGTGCACCATCGACGACGACCAGGTGTTGCTCGA
TGTGCTCGACACCGCCGGGCAGGAGGAGTACCTGGCAATGCGCGAGCAGTACATGCGCACCGGCG
AGGGGTTTCTTCTAGTGTACCTGATCAACTCCCGCAACCTGTTGGAGGAGTTGGCGGCGTTCTAC
GAGCAGATTTTGCGGGTCAAGGACGCGGACCTGGTGCCGGTGCTTGTGGTGGGCAACAAGTGCGA
CCTCGAGATCGAGCGCCAGGTGCTGTTTGAGGAGGGCCAGGCGCTCGCCAAGCGGTTCGGGTGCA
AGTTTTTGGAGACCCTGGCCAAGCAGCGCATCAACGTCGAGGAGGCGTTCTTTGACTTGGTGCGG
CTGATCCGTGACGACGGGGCGGCGGCGGCGGCGGCGGCGCCCGCGGCGGTGGCGGCCCCGGTGGC
GGCCCTGCTGGCGGAGCCGGTGCCCGCGGCCGCGCCCCAGGCGCC
Right flanking sequence: Indices 105442 -- 105941
AAGGAGGCGCGCCCCCAGAAGCGCAAGGAGCAGGCGGCGGCGCCCGCGGCCGAGCCCAAGGAGAA
GTCGGGGTGCTGTGTGATTGTGTAGCGGGGGAGGCACTGAGCTGGCGTCCCGGTTAATAATACTG
TTTATGTTAAGGCATGGAATTAGAGAATGAGGGTGTGGTTGGTGTGGGTAGTTGGTGTGTGTGTA
TGTGTTGTGGTGTGGGTGTGCTGTTGGGGTATTTGTCTGGCTGGTGTATTTGCCTGGCTGGTGTG
GATGTTTCGTTGGTGGTGTGATTGTAGTTGGTTAGCTTTTGTAGCTGGTTGCTTATTGTAGCTGG
TTGGCTATTGTGTTGGTGTATTCTCTGTTCGGGTGAGTGTGGGTTGGTGAGCTGGGCAGGTGAGT
GTAGGATGTTAAGAGTGAGTTGGTGAGCGTATGCTTGTTAATTGTAAGATGATGTCAATATCGCA
GCTGGTGTCCTCTGGGTGATATGTTAGTAGCCTTCCATTGGTTCT
Found at i:105687 original size:17 final size:17
Alignment explanation
Indices: 105665--105700 Score: 63
Period size: 17 Copynumber: 2.1 Consensus size: 17
105655 TGCTGTTGGG
*
105665 GTATTTGTCTGGCTGGT
1 GTATTTGCCTGGCTGGT
105682 GTATTTGCCTGGCTGGT
1 GTATTTGCCTGGCTGGT
105699 GT
1 GT
105701 GGATGTTTCG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.06, C:0.14, G:0.36, T:0.44
Consensus pattern (17 bp):
GTATTTGCCTGGCTGGT
Left flanking sequence: Indices 105165 -- 105664
CCTCGAGATCGAGCGCCAGGTGCTGTTTGAGGAGGGCCAGGCGCTCGCCAAGCGGTTCGGGTGCA
AGTTTTTGGAGACCCTGGCCAAGCAGCGCATCAACGTCGAGGAGGCGTTCTTTGACTTGGTGCGG
CTGATCCGTGACGACGGGGCGGCGGCGGCGGCGGCGGCGCCCGCGGCGGTGGCGGCCCCGGTGGC
GGCCCTGCTGGCGGAGCCGGTGCCCGCGGCCGCGCCCCAGGCGCCCCCCGCGGCGGAGGCCCCCG
CGGCGGAGGAGCCCGCGAAGGAGGCGCGCCCCCAGAAGCGCAAGGAGCAGGCGGCGGCGCCCGCG
GCCGAGCCCAAGGAGAAGTCGGGGTGCTGTGTGATTGTGTAGCGGGGGAGGCACTGAGCTGGCGT
CCCGGTTAATAATACTGTTTATGTTAAGGCATGGAATTAGAGAATGAGGGTGTGGTTGGTGTGGG
TAGTTGGTGTGTGTGTATGTGTTGTGGTGTGGGTGTGCTGTTGGG
Right flanking sequence: Indices 105701 -- 106200
GGATGTTTCGTTGGTGGTGTGATTGTAGTTGGTTAGCTTTTGTAGCTGGTTGCTTATTGTAGCTG
GTTGGCTATTGTGTTGGTGTATTCTCTGTTCGGGTGAGTGTGGGTTGGTGAGCTGGGCAGGTGAG
TGTAGGATGTTAAGAGTGAGTTGGTGAGCGTATGCTTGTTAATTGTAAGATGATGTCAATATCGC
AGCTGGTGTCCTCTGGGTGATATGTTAGTAGCCTTCCATTGGTTCTACCACTGTTGACACTTCAA
TTGTACCCTTGCTCTCACCCACATTGAAACGTTCAATTGCACTGTTCCAATCATCGTTACTGTTT
TTTTGACGTTTATCGGACACTGCTACCTTGACGTCTTTAACCTTGACACCCCTACCTGACACTAC
TACCTGACACTCCACCTGACACTACTACCTGACACGCCTACCTGACACCGTTCCTTGACACGTTC
CTCAACGTTGACACCTTCGACAATGGGACAATGTGTTGACAGGTG
Found at i:105775 original size:17 final size:16
Alignment explanation
Indices: 105722--105777 Score: 67
Period size: 17 Copynumber: 3.3 Consensus size: 16
105712 TGGTGGTGTG
*
105722 ATTGTAGTTGGTTAGCT
1 ATTGTAGCTGGTT-GCT
*
105739 TTTGTAGCTGGTTGCTT
1 ATTGTAGCTGGTTGC-T
105756 ATTGTAGCTGGTTGGCT
1 ATTGTAGCTGGTT-GCT
105773 ATTGT
1 ATTGT
105778 GTTGGTGTAT
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
16 2 0.06
17 30 0.88
18 2 0.06
ACGTcount: A:0.12, C:0.09, G:0.30, T:0.48
Consensus pattern (16 bp):
ATTGTAGCTGGTTGCT
Left flanking sequence: Indices 105222 -- 105721
CGGGTGCAAGTTTTTGGAGACCCTGGCCAAGCAGCGCATCAACGTCGAGGAGGCGTTCTTTGACT
TGGTGCGGCTGATCCGTGACGACGGGGCGGCGGCGGCGGCGGCGGCGCCCGCGGCGGTGGCGGCC
CCGGTGGCGGCCCTGCTGGCGGAGCCGGTGCCCGCGGCCGCGCCCCAGGCGCCCCCCGCGGCGGA
GGCCCCCGCGGCGGAGGAGCCCGCGAAGGAGGCGCGCCCCCAGAAGCGCAAGGAGCAGGCGGCGG
CGCCCGCGGCCGAGCCCAAGGAGAAGTCGGGGTGCTGTGTGATTGTGTAGCGGGGGAGGCACTGA
GCTGGCGTCCCGGTTAATAATACTGTTTATGTTAAGGCATGGAATTAGAGAATGAGGGTGTGGTT
GGTGTGGGTAGTTGGTGTGTGTGTATGTGTTGTGGTGTGGGTGTGCTGTTGGGGTATTTGTCTGG
CTGGTGTATTTGCCTGGCTGGTGTGGATGTTTCGTTGGTGGTGTG
Right flanking sequence: Indices 105778 -- 106277
GTTGGTGTATTCTCTGTTCGGGTGAGTGTGGGTTGGTGAGCTGGGCAGGTGAGTGTAGGATGTTA
AGAGTGAGTTGGTGAGCGTATGCTTGTTAATTGTAAGATGATGTCAATATCGCAGCTGGTGTCCT
CTGGGTGATATGTTAGTAGCCTTCCATTGGTTCTACCACTGTTGACACTTCAATTGTACCCTTGC
TCTCACCCACATTGAAACGTTCAATTGCACTGTTCCAATCATCGTTACTGTTTTTTTGACGTTTA
TCGGACACTGCTACCTTGACGTCTTTAACCTTGACACCCCTACCTGACACTACTACCTGACACTC
CACCTGACACTACTACCTGACACGCCTACCTGACACCGTTCCTTGACACGTTCCTCAACGTTGAC
ACCTTCGACAATGGGACAATGTGTTGACAGGTGTTGACAGGTGTTGACACTGAGCACATTAGACT
GAGCACATTACATTGACCACATTAGGAGCATTAGACTGGGCAATT
Found at i:106087 original size:13 final size:13
Alignment explanation
Indices: 106069--106138 Score: 97
Period size: 13 Copynumber: 5.5 Consensus size: 13
106059 TCTTTAACCT
*
106069 TGACACCCCTACC
1 TGACACTCCTACC
*
106082 TGACACTACTACC
1 TGACACTCCTACC
106095 TGACACTCC-ACC
1 TGACACTCCTACC
*
106107 TGACACTACTACC
1 TGACACTCCTACC
*
106120 TGACACGCCTACC
1 TGACACTCCTACC
106133 TGACAC
1 TGACAC
106139 CGTTCCTTGA
Statistics
Matches: 50, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
12 11 0.22
13 39 0.78
ACGTcount: A:0.27, C:0.44, G:0.10, T:0.19
Consensus pattern (13 bp):
TGACACTCCTACC
Left flanking sequence: Indices 105569 -- 106068
CTGTTTATGTTAAGGCATGGAATTAGAGAATGAGGGTGTGGTTGGTGTGGGTAGTTGGTGTGTGT
GTATGTGTTGTGGTGTGGGTGTGCTGTTGGGGTATTTGTCTGGCTGGTGTATTTGCCTGGCTGGT
GTGGATGTTTCGTTGGTGGTGTGATTGTAGTTGGTTAGCTTTTGTAGCTGGTTGCTTATTGTAGC
TGGTTGGCTATTGTGTTGGTGTATTCTCTGTTCGGGTGAGTGTGGGTTGGTGAGCTGGGCAGGTG
AGTGTAGGATGTTAAGAGTGAGTTGGTGAGCGTATGCTTGTTAATTGTAAGATGATGTCAATATC
GCAGCTGGTGTCCTCTGGGTGATATGTTAGTAGCCTTCCATTGGTTCTACCACTGTTGACACTTC
AATTGTACCCTTGCTCTCACCCACATTGAAACGTTCAATTGCACTGTTCCAATCATCGTTACTGT
TTTTTTGACGTTTATCGGACACTGCTACCTTGACGTCTTTAACCT
Right flanking sequence: Indices 106139 -- 106638
CGTTCCTTGACACGTTCCTCAACGTTGACACCTTCGACAATGGGACAATGTGTTGACAGGTGTTG
ACAGGTGTTGACACTGAGCACATTAGACTGAGCACATTACATTGACCACATTAGGAGCATTAGAC
TGGGCAATTAGACACTGCTGCATTTCACCACACCACACACCAATACTGTTTACACCGTGTCCACT
ATTCCACGTTCGTATCTCATTCCTACACCGTGCCAGATCGTCCCTTTGTTCTTCACGCAATTGCT
CCCACGCCGTGTTGGGTCAATGCATCGACCCCCATGCATTGGTGGGTGCGTGGTGCTGCGGGAGG
TGCGGTGTCCTGCTGGGGCCATGCGGGCGGTGATGCGCCCGTGCGGTGCGGTGCTGGTGCCAGGA
CCCGATGCGACGGCGAGCAAATTGCCCGCCGGGACTGGCAGGTGCTGTGGCCGTCGTAGCTCGTG
GCGAAACAACGGGTAGGTGGACCCGGTGGTTGCCGCAGGCGGACA
Found at i:106109 original size:25 final size:26
Alignment explanation
Indices: 106069--106138 Score: 115
Period size: 25 Copynumber: 2.7 Consensus size: 26
106059 TCTTTAACCT
106069 TGACACCCCTACCTGACACTACTACC
1 TGACACCCCTACCTGACACTACTACC
*
106095 TGACACTCC-ACCTGACACTACTACC
1 TGACACCCCTACCTGACACTACTACC
*
106120 TGACACGCCTACCTGACAC
1 TGACACCCCTACCTGACAC
106139 CGTTCCTTGA
Statistics
Matches: 41, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
25 24 0.59
26 17 0.41
ACGTcount: A:0.27, C:0.44, G:0.10, T:0.19
Consensus pattern (26 bp):
TGACACCCCTACCTGACACTACTACC
Left flanking sequence: Indices 105569 -- 106068
CTGTTTATGTTAAGGCATGGAATTAGAGAATGAGGGTGTGGTTGGTGTGGGTAGTTGGTGTGTGT
GTATGTGTTGTGGTGTGGGTGTGCTGTTGGGGTATTTGTCTGGCTGGTGTATTTGCCTGGCTGGT
GTGGATGTTTCGTTGGTGGTGTGATTGTAGTTGGTTAGCTTTTGTAGCTGGTTGCTTATTGTAGC
TGGTTGGCTATTGTGTTGGTGTATTCTCTGTTCGGGTGAGTGTGGGTTGGTGAGCTGGGCAGGTG
AGTGTAGGATGTTAAGAGTGAGTTGGTGAGCGTATGCTTGTTAATTGTAAGATGATGTCAATATC
GCAGCTGGTGTCCTCTGGGTGATATGTTAGTAGCCTTCCATTGGTTCTACCACTGTTGACACTTC
AATTGTACCCTTGCTCTCACCCACATTGAAACGTTCAATTGCACTGTTCCAATCATCGTTACTGT
TTTTTTGACGTTTATCGGACACTGCTACCTTGACGTCTTTAACCT
Right flanking sequence: Indices 106139 -- 106638
CGTTCCTTGACACGTTCCTCAACGTTGACACCTTCGACAATGGGACAATGTGTTGACAGGTGTTG
ACAGGTGTTGACACTGAGCACATTAGACTGAGCACATTACATTGACCACATTAGGAGCATTAGAC
TGGGCAATTAGACACTGCTGCATTTCACCACACCACACACCAATACTGTTTACACCGTGTCCACT
ATTCCACGTTCGTATCTCATTCCTACACCGTGCCAGATCGTCCCTTTGTTCTTCACGCAATTGCT
CCCACGCCGTGTTGGGTCAATGCATCGACCCCCATGCATTGGTGGGTGCGTGGTGCTGCGGGAGG
TGCGGTGTCCTGCTGGGGCCATGCGGGCGGTGATGCGCCCGTGCGGTGCGGTGCTGGTGCCAGGA
CCCGATGCGACGGCGAGCAAATTGCCCGCCGGGACTGGCAGGTGCTGTGGCCGTCGTAGCTCGTG
GCGAAACAACGGGTAGGTGGACCCGGTGGTTGCCGCAGGCGGACA
Found at i:106203 original size:10 final size:10
Alignment explanation
Indices: 106188--106216 Score: 58
Period size: 10 Copynumber: 2.9 Consensus size: 10
106178 ATGGGACAAT
106188 GTGTTGACAG
1 GTGTTGACAG
106198 GTGTTGACAG
1 GTGTTGACAG
106208 GTGTTGACA
1 GTGTTGACA
106217 CTGAGCACAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.21, C:0.10, G:0.38, T:0.31
Consensus pattern (10 bp):
GTGTTGACAG
Left flanking sequence: Indices 105688 -- 106187
GCCTGGCTGGTGTGGATGTTTCGTTGGTGGTGTGATTGTAGTTGGTTAGCTTTTGTAGCTGGTTG
CTTATTGTAGCTGGTTGGCTATTGTGTTGGTGTATTCTCTGTTCGGGTGAGTGTGGGTTGGTGAG
CTGGGCAGGTGAGTGTAGGATGTTAAGAGTGAGTTGGTGAGCGTATGCTTGTTAATTGTAAGATG
ATGTCAATATCGCAGCTGGTGTCCTCTGGGTGATATGTTAGTAGCCTTCCATTGGTTCTACCACT
GTTGACACTTCAATTGTACCCTTGCTCTCACCCACATTGAAACGTTCAATTGCACTGTTCCAATC
ATCGTTACTGTTTTTTTGACGTTTATCGGACACTGCTACCTTGACGTCTTTAACCTTGACACCCC
TACCTGACACTACTACCTGACACTCCACCTGACACTACTACCTGACACGCCTACCTGACACCGTT
CCTTGACACGTTCCTCAACGTTGACACCTTCGACAATGGGACAAT
Right flanking sequence: Indices 106217 -- 106716
CTGAGCACATTAGACTGAGCACATTACATTGACCACATTAGGAGCATTAGACTGGGCAATTAGAC
ACTGCTGCATTTCACCACACCACACACCAATACTGTTTACACCGTGTCCACTATTCCACGTTCGT
ATCTCATTCCTACACCGTGCCAGATCGTCCCTTTGTTCTTCACGCAATTGCTCCCACGCCGTGTT
GGGTCAATGCATCGACCCCCATGCATTGGTGGGTGCGTGGTGCTGCGGGAGGTGCGGTGTCCTGC
TGGGGCCATGCGGGCGGTGATGCGCCCGTGCGGTGCGGTGCTGGTGCCAGGACCCGATGCGACGG
CGAGCAAATTGCCCGCCGGGACTGGCAGGTGCTGTGGCCGTCGTAGCTCGTGGCGAAACAACGGG
TAGGTGGACCCGGTGGTTGCCGCAGGCGGACAATAGGCCTGCCTCAGCATTTCTTGGCCCGAGAT
CCTTCCTGTGGCTCGACAATCCGTCGAGGATCGGGGCAATTGCGT
Found at i:106235 original size:14 final size:14
Alignment explanation
Indices: 106216--106257 Score: 57
Period size: 14 Copynumber: 3.0 Consensus size: 14
106206 AGGTGTTGAC
106216 ACTGAGCACATTAG
1 ACTGAGCACATTAG
*
106230 ACTGAGCACATTAC
1 ACTGAGCACATTAG
* *
106244 ATTGACCACATTAG
1 ACTGAGCACATTAG
106258 GAGCATTAGA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
14 24 1.00
ACGTcount: A:0.36, C:0.24, G:0.17, T:0.24
Consensus pattern (14 bp):
ACTGAGCACATTAG
Left flanking sequence: Indices 105716 -- 106215
GGTGTGATTGTAGTTGGTTAGCTTTTGTAGCTGGTTGCTTATTGTAGCTGGTTGGCTATTGTGTT
GGTGTATTCTCTGTTCGGGTGAGTGTGGGTTGGTGAGCTGGGCAGGTGAGTGTAGGATGTTAAGA
GTGAGTTGGTGAGCGTATGCTTGTTAATTGTAAGATGATGTCAATATCGCAGCTGGTGTCCTCTG
GGTGATATGTTAGTAGCCTTCCATTGGTTCTACCACTGTTGACACTTCAATTGTACCCTTGCTCT
CACCCACATTGAAACGTTCAATTGCACTGTTCCAATCATCGTTACTGTTTTTTTGACGTTTATCG
GACACTGCTACCTTGACGTCTTTAACCTTGACACCCCTACCTGACACTACTACCTGACACTCCAC
CTGACACTACTACCTGACACGCCTACCTGACACCGTTCCTTGACACGTTCCTCAACGTTGACACC
TTCGACAATGGGACAATGTGTTGACAGGTGTTGACAGGTGTTGAC
Right flanking sequence: Indices 106258 -- 106757
GAGCATTAGACTGGGCAATTAGACACTGCTGCATTTCACCACACCACACACCAATACTGTTTACA
CCGTGTCCACTATTCCACGTTCGTATCTCATTCCTACACCGTGCCAGATCGTCCCTTTGTTCTTC
ACGCAATTGCTCCCACGCCGTGTTGGGTCAATGCATCGACCCCCATGCATTGGTGGGTGCGTGGT
GCTGCGGGAGGTGCGGTGTCCTGCTGGGGCCATGCGGGCGGTGATGCGCCCGTGCGGTGCGGTGC
TGGTGCCAGGACCCGATGCGACGGCGAGCAAATTGCCCGCCGGGACTGGCAGGTGCTGTGGCCGT
CGTAGCTCGTGGCGAAACAACGGGTAGGTGGACCCGGTGGTTGCCGCAGGCGGACAATAGGCCTG
CCTCAGCATTTCTTGGCCCGAGATCCTTCCTGTGGCTCGACAATCCGTCGAGGATCGGGGCAATT
GCGTCGGAGAACCGGCCAGTAGCACGGACAGCGTCCCGTTTCCGC
Found at i:107377 original size:13 final size:13
Alignment explanation
Indices: 107359--107383 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
107349 AGCACGGTCT
107359 AGCACGAAGCACA
1 AGCACGAAGCACA
107372 AGCACGAAGCAC
1 AGCACGAAGCAC
107384 GCAAGCGTGA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.32, G:0.24, T:0.00
Consensus pattern (13 bp):
AGCACGAAGCACA
Left flanking sequence: Indices 106859 -- 107358
TCTGCACCGACAGCCCGGCTCCAACGCCTCCCCAAGCCTCCCACGGCAGGGAAAGGGTCTCCGAG
CCATTGTGGTGGCGCCACGAAGCTTGGCGCTGGCCGGGTCGACCTCTACATTCCGACGCACCGGG
CGATGCTCCGGACGCACCCGGTGCATGAGGTCCCGTCATTGGCTGGCGCTAAGCCATACCCCAGC
GCAGGAAGAGGGAGTATGGGGGGTCACTGACGCTTGGGTGGTGTCTGCTGTGTGGTGTCTGCTAT
TTTTCTTTGTTGTGTTGTGGGTTGGTTGCTATTTTTAGTACCTCGCACTTACCCCGGTGTTATTG
GCCCGTTTCACGGTGATTCACCTCCGGACCAACCCCGGCACAGCAAACGGACACGTTGGTCGGTG
CTGTGGCCACCTGGCAACCCATTGGGTGTGGTGCGGGGACTGGGTGGGGCTGCCCGAATAAGCTT
TCGCTTGTTACTGCCCAGTCCTTGGCCAACATTGGAGCACGGTCT
Right flanking sequence: Indices 107384 -- 107883
GCAAGCGTGAAGCTAGCGTGAAGCATGCTAGCGTGTGGGGTAGGCTGTGCATCAGCAGCGAAGGC
GTGCACCAGCACTACCTCGAGGTAGGGCCGTGAAAGCGGGGAGATGTAGGTTGGAGCGGGCCAGG
AGCTACAGTGGGGCCTGGGTGCTACAGTCGGGCCTGGATGCTACGCAGTGGGCCTGAAAAAAGCA
GCGGAGTCTCGCGTACCCGATACACACCCAGGGACATGTGAATTCGGCAACGGACAGCTGCCAGA
ATCAGCTGTTTCCACCCTGTAGACTTCTGTACCTTTTCTTTTGATTATGTCCAGTATTATCTACC
GCCATGCAAAGCCCCGAAAATACGCCAAGAACTAGTCCCTCGTGCTACCGCCATCTGTAGGGTTT
GAGACGATCCTGTGATTTTCCTGGGCCTCTCAGGCTAGTGCACCCGGTAGGGCGGTGTGCAACAT
GTGGGCTAAAAAATACGCCTGCAAGGAATACGTCAGGCGAGGAGA
Found at i:107569 original size:20 final size:19
Alignment explanation
Indices: 107505--107557 Score: 72
Period size: 19 Copynumber: 2.8 Consensus size: 19
107495 TAGGTTGGAG
*
107505 CGGGCCAGGA-GCTACAGT
1 CGGGCCTGGATGCTACAGT
* *
107523 GGGGCCTGGGTGCTACAGT
1 CGGGCCTGGATGCTACAGT
107542 CGGGCCTGGATGCTAC
1 CGGGCCTGGATGCTAC
107558 GCAGTGGGCC
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
18 7 0.24
19 22 0.76
ACGTcount: A:0.15, C:0.26, G:0.42, T:0.17
Consensus pattern (19 bp):
CGGGCCTGGATGCTACAGT
Left flanking sequence: Indices 107005 -- 107504
CCCGGTGCATGAGGTCCCGTCATTGGCTGGCGCTAAGCCATACCCCAGCGCAGGAAGAGGGAGTA
TGGGGGGTCACTGACGCTTGGGTGGTGTCTGCTGTGTGGTGTCTGCTATTTTTCTTTGTTGTGTT
GTGGGTTGGTTGCTATTTTTAGTACCTCGCACTTACCCCGGTGTTATTGGCCCGTTTCACGGTGA
TTCACCTCCGGACCAACCCCGGCACAGCAAACGGACACGTTGGTCGGTGCTGTGGCCACCTGGCA
ACCCATTGGGTGTGGTGCGGGGACTGGGTGGGGCTGCCCGAATAAGCTTTCGCTTGTTACTGCCC
AGTCCTTGGCCAACATTGGAGCACGGTCTAGCACGAAGCACAAGCACGAAGCACGCAAGCGTGAA
GCTAGCGTGAAGCATGCTAGCGTGTGGGGTAGGCTGTGCATCAGCAGCGAAGGCGTGCACCAGCA
CTACCTCGAGGTAGGGCCGTGAAAGCGGGGAGATGTAGGTTGGAG
Right flanking sequence: Indices 107558 -- 108057
GCAGTGGGCCTGAAAAAAGCAGCGGAGTCTCGCGTACCCGATACACACCCAGGGACATGTGAATT
CGGCAACGGACAGCTGCCAGAATCAGCTGTTTCCACCCTGTAGACTTCTGTACCTTTTCTTTTGA
TTATGTCCAGTATTATCTACCGCCATGCAAAGCCCCGAAAATACGCCAAGAACTAGTCCCTCGTG
CTACCGCCATCTGTAGGGTTTGAGACGATCCTGTGATTTTCCTGGGCCTCTCAGGCTAGTGCACC
CGGTAGGGCGGTGTGCAACATGTGGGCTAAAAAATACGCCTGCAAGGAATACGTCAGGCGAGGAG
ATTGCTTCTTCAAGCGAAGGGGACGGGATAGGGTGCTAGTAGTAGCGGGGGGCGTTTTTGTGTGT
GGTTGGGTTGCTGGTGGAGCCCGGTGGCTTTCGGTGGGTGGCCTTCTTTGCGCCAGGTTCCGGAG
ATCCACCCGTATTCCATGCATGAGCGGAACCGGCCGTGGAAGCTC
Found at i:108568 original size:16 final size:16
Alignment explanation
Indices: 108533--108596 Score: 76
Period size: 16 Copynumber: 4.1 Consensus size: 16
108523 CCTCGAACCT
*
108533 ACTGAACGAC-TCGTG
1 ACTGAACGACACCGTG
*
108548 CCTGAACGACACCGTG
1 ACTGAACGACACCGTG
*
108564 ACTGAACGAGACCGTG
1 ACTGAACGACACCGTG
* *
108580 ACTGAACAACTCCGTG
1 ACTGAACGACACCGTG
108596 A
1 A
108597 GATACAGATT
Statistics
Matches: 41, Mismatches: 7, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
15 9 0.22
16 32 0.78
ACGTcount: A:0.30, C:0.30, G:0.25, T:0.16
Consensus pattern (16 bp):
ACTGAACGACACCGTG
Left flanking sequence: Indices 108033 -- 108532
TGAGCGGAACCGGCCGTGGAAGCTCGCGGGACGAGGAAGCACGGCGGGGAAAAATGAAACTACCA
CGGGGGACGCGAGTGAGTTGGTACGGGTATTTTTGGGTGGCATTTTGGTGGCATTCTGGGGTCTG
GCACTCACCAAGGGGGATTGATGAATTTATCGACGAAACATTGTTCATCGCTGAAAAATAGTTGT
TTCCTCCCCAGAGCCCGAAAAAAAATCATCCCAGTCAACAAGCAGGTGTGTGGACTCGTTTTACA
GCTGAGTTAAGGGTTTGAGTCCCACCGTTCTTTAGTTTGGCGGTGATTCTAACCGCTCGACTACC
ACTCTTGGTATCAAGAAGTTGACAGCCGGCAGGAGTCTAAGGATGATCAAAATTCCAGATGATCA
ATTTCTGCATTGAAAGAGTGTTTGGCTTCTTTCTCCGTCCCTCTCTTTTCGGTTATGGCCTGGGT
CACGATGTCTATTGATATAAAGAGTTGATCGACTACCTCGAACCT
Right flanking sequence: Indices 108597 -- 109096
GATACAGATTCACAAATGTGAAGGTGCCAATCCTTGACACAACGTCTGTTCAACAGTCTGATTGC
GGTCCATTGATCAAAATTTGTCCGAATCGAGATGAAGGTAAAGACCCTCTAAAGACCTAGTATTA
ATTACTGGACAATGGAAGAGTGGCTTCACCCCATGGCAAACAAACCCTTCAGTACCGTTCCAGGC
CGTGGCTCCACCCACCACATCCTAAACTTCTTATGGTCAACTCACATTCTCCCCACTAGCCACAC
ACAACCCAACTCACCACCCAACCACCCAATTCACCACTTACCACCCACCCTAACCCCTCACTGAC
TCCCATTCCCCTCCATTCGCACCCCAAACACCCAATTGCCACACATCCCAACTCGTCTACACCCC
CCACCTCGTCTACACCCCACTCCCCATCTCGTCTTCCCCCTCCTACAAATTCCCAAACCATACAT
CCATTAATTAATAAAGTGAAACACGATAAAGTGCAAGATCAAACT
Found at i:108989 original size:18 final size:18
Alignment explanation
Indices: 108968--109004 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
108958 TGCCACACAT
108968 CCCAACTCGTCTACACCC
1 CCCAACTCGTCTACACCC
*
108986 CCCACCTCGTCTACACCC
1 CCCAACTCGTCTACACCC
109004 C
1 C
109005 ACTCCCCATC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.19, C:0.59, G:0.05, T:0.16
Consensus pattern (18 bp):
CCCAACTCGTCTACACCC
Left flanking sequence: Indices 108468 -- 108967
TTTTCGGTTATGGCCTGGGTCACGATGTCTATTGATATAAAGAGTTGATCGACTACCTCGAACCT
ACTGAACGACTCGTGCCTGAACGACACCGTGACTGAACGAGACCGTGACTGAACAACTCCGTGAG
ATACAGATTCACAAATGTGAAGGTGCCAATCCTTGACACAACGTCTGTTCAACAGTCTGATTGCG
GTCCATTGATCAAAATTTGTCCGAATCGAGATGAAGGTAAAGACCCTCTAAAGACCTAGTATTAA
TTACTGGACAATGGAAGAGTGGCTTCACCCCATGGCAAACAAACCCTTCAGTACCGTTCCAGGCC
GTGGCTCCACCCACCACATCCTAAACTTCTTATGGTCAACTCACATTCTCCCCACTAGCCACACA
CAACCCAACTCACCACCCAACCACCCAATTCACCACTTACCACCCACCCTAACCCCTCACTGACT
CCCATTCCCCTCCATTCGCACCCCAAACACCCAATTGCCACACAT
Right flanking sequence: Indices 109005 -- 109504
ACTCCCCATCTCGTCTTCCCCCTCCTACAAATTCCCAAACCATACATCCATTAATTAATAAAGTG
AAACACGATAAAGTGCAAGATCAAACTGGCAAACACAAACTCGCCAAACACGTAGTTGTTGGCCT
CCTCCTTGGGCAGGTCCACCACCTGCAACCGCAACAGCACCGCCAACACAAACTGGCCCACACAC
GAGATAAACCCGCCCAAGAACGCGTTGAAAGGGAAGTCCCCCACCACAATCACGTACACGAACTG
GAGCACCCCCAACAACACGAGAAACGCCAAAAACGTGTCGATCAACTGGAGCCTCGGGGTCAATG
TCTTGACGTAGTCGTTGTAGGTGAGCTGGAAGGCGGAGAACACCTCGGACATCTGCTGGGACGCC
GCGGGAGTCTTGGATTTGACTGCCTTGACGGGGACGGAGCCCTTGGCAGCGGCTTTGGACATGGT
CTTGACGTGTCGAAGCGGGCGAAAAATGCGCGTAAGTGGTGGTGG
Found at i:109870 original size:13 final size:13
Alignment explanation
Indices: 109852--109929 Score: 102
Period size: 13 Copynumber: 6.0 Consensus size: 13
109842 GCGCTCAGTC
*
109852 ATAATCAACCGTG
1 ATAATCAACCGTA
* *
109865 ATAATCACCCTTA
1 ATAATCAACCGTA
109878 ATAATCAACCGTA
1 ATAATCAACCGTA
*
109891 ATAATCAACCGTT
1 ATAATCAACCGTA
* *
109904 GTAGTCAACCGTA
1 ATAATCAACCGTA
109917 ATAATCAACCGTA
1 ATAATCAACCGTA
109930 CATACGGATT
Statistics
Matches: 54, Mismatches: 11, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
13 54 1.00
ACGTcount: A:0.40, C:0.24, G:0.10, T:0.26
Consensus pattern (13 bp):
ATAATCAACCGTA
Left flanking sequence: Indices 109352 -- 109851
GAGCTGGAAGGCGGAGAACACCTCGGACATCTGCTGGGACGCCGCGGGAGTCTTGGATTTGACTG
CCTTGACGGGGACGGAGCCCTTGGCAGCGGCTTTGGACATGGTCTTGACGTGTCGAAGCGGGCGA
AAAATGCGCGTAAGTGGTGGTGGGGGGACGGTCGTGTGGCGGTCGCGGGCGGACAATGGGGACGG
AAGGGGGGATTGGGGGGTGGTATGGGGTTGTAGGGTGCTCTACGGTGGTATTGGTTGGGGTATTA
GTGGTTTTCAGGAGGTTCGGGCGCGTTTTTGGTGGGTGACGCGTGTGGGTGGGTGTTTGGAGGCT
GTGGTGGAACTTTCGCAGGGACGGGTAGTGATGAGAATTGACAGTGATGGTACTGCTAGAAGCGT
TGGGTGTAATAATAGAGACGTTGGGGTGGTCAATGGCAAGGTAGCAGAATTGTCCGGTTGCGGAA
TATTTGCTCAGTTAGTGGTTTACATGTCTGTTACAGCGCTCAGTC
Right flanking sequence: Indices 109930 -- 110429
CATACGGATTATTAGGAAGCAAACACGCTCTAACCAGCTCGTGGCCGACATCCTTCAACCTAGCA
ACCGCCCTTCACCCCCATAAATACCCACCACTCACTTACCAGTAAATCACTCGTACATACCTCAC
CTTCAACTACATCACTCACCTACCACTACATCGCTCACCTGCCACTACATCACTCTACTCCACTA
CATGTCTGACCTTATCGTGATAACGCCACTCGGGGAAACTTACGATCGCCGCGGCCACCCGTCAC
GGCTATTCCTCCGATCCTTCCACTCAACCCATGGCACCATGGGCCAGTCACACAAACGTGTCAGT
CACAAAACGTGTCTGGTTACACCAACCGCCATCTCCACGACCCAATTGCAATTTCACCTAGATTC
CCATTCTACACTCTTACTTTCGAACTCTTCTCATCCACATCAACCTTACCTTCCTAAACTTCTCC
GCTAAATATTTCTCTCGTCTTCCCAGCCGTCTCCTCTTCGCGCTC
Found at i:109919 original size:39 final size:39
Alignment explanation
Indices: 109852--109929 Score: 113
Period size: 39 Copynumber: 2.0 Consensus size: 39
109842 GCGCTCAGTC
* *
109852 ATAATCAACCGTGATAATCACCCTTAATAATCAACCGTA
1 ATAATCAACCGTGATAATCAACCGTAATAATCAACCGTA
*
109891 ATAATCAACCGTTG-TAGTCAACCGTAATAATCAACCGTA
1 ATAATCAACCG-TGATAATCAACCGTAATAATCAACCGTA
109930 CATACGGATT
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
39 33 0.94
40 2 0.06
ACGTcount: A:0.40, C:0.24, G:0.10, T:0.26
Consensus pattern (39 bp):
ATAATCAACCGTGATAATCAACCGTAATAATCAACCGTA
Left flanking sequence: Indices 109352 -- 109851
GAGCTGGAAGGCGGAGAACACCTCGGACATCTGCTGGGACGCCGCGGGAGTCTTGGATTTGACTG
CCTTGACGGGGACGGAGCCCTTGGCAGCGGCTTTGGACATGGTCTTGACGTGTCGAAGCGGGCGA
AAAATGCGCGTAAGTGGTGGTGGGGGGACGGTCGTGTGGCGGTCGCGGGCGGACAATGGGGACGG
AAGGGGGGATTGGGGGGTGGTATGGGGTTGTAGGGTGCTCTACGGTGGTATTGGTTGGGGTATTA
GTGGTTTTCAGGAGGTTCGGGCGCGTTTTTGGTGGGTGACGCGTGTGGGTGGGTGTTTGGAGGCT
GTGGTGGAACTTTCGCAGGGACGGGTAGTGATGAGAATTGACAGTGATGGTACTGCTAGAAGCGT
TGGGTGTAATAATAGAGACGTTGGGGTGGTCAATGGCAAGGTAGCAGAATTGTCCGGTTGCGGAA
TATTTGCTCAGTTAGTGGTTTACATGTCTGTTACAGCGCTCAGTC
Right flanking sequence: Indices 109930 -- 110429
CATACGGATTATTAGGAAGCAAACACGCTCTAACCAGCTCGTGGCCGACATCCTTCAACCTAGCA
ACCGCCCTTCACCCCCATAAATACCCACCACTCACTTACCAGTAAATCACTCGTACATACCTCAC
CTTCAACTACATCACTCACCTACCACTACATCGCTCACCTGCCACTACATCACTCTACTCCACTA
CATGTCTGACCTTATCGTGATAACGCCACTCGGGGAAACTTACGATCGCCGCGGCCACCCGTCAC
GGCTATTCCTCCGATCCTTCCACTCAACCCATGGCACCATGGGCCAGTCACACAAACGTGTCAGT
CACAAAACGTGTCTGGTTACACCAACCGCCATCTCCACGACCCAATTGCAATTTCACCTAGATTC
CCATTCTACACTCTTACTTTCGAACTCTTCTCATCCACATCAACCTTACCTTCCTAAACTTCTCC
GCTAAATATTTCTCTCGTCTTCCCAGCCGTCTCCTCTTCGCGCTC
Found at i:110077 original size:19 final size:19
Alignment explanation
Indices: 110055--110127 Score: 87
Period size: 19 Copynumber: 3.9 Consensus size: 19
110045 TCGTACATAC
* *
110055 CTCACCTTCAACTACATCA
1 CTCACCTACCACTACATCA
*
110074 CTCACCTACCACTACATCG
1 CTCACCTACCACTACATCA
*
110093 CTCACCTGCCACTACATCA
1 CTCACCTACCACTACATCA
110112 CTCTA-CT-CCACTACAT
1 CTC-ACCTACCACTACAT
110128 GTCTGACCTT
Statistics
Matches: 48, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
18 9 0.19
19 38 0.79
20 1 0.02
ACGTcount: A:0.27, C:0.45, G:0.03, T:0.25
Consensus pattern (19 bp):
CTCACCTACCACTACATCA
Left flanking sequence: Indices 109555 -- 110054
ATTGGGGGGTGGTATGGGGTTGTAGGGTGCTCTACGGTGGTATTGGTTGGGGTATTAGTGGTTTT
CAGGAGGTTCGGGCGCGTTTTTGGTGGGTGACGCGTGTGGGTGGGTGTTTGGAGGCTGTGGTGGA
ACTTTCGCAGGGACGGGTAGTGATGAGAATTGACAGTGATGGTACTGCTAGAAGCGTTGGGTGTA
ATAATAGAGACGTTGGGGTGGTCAATGGCAAGGTAGCAGAATTGTCCGGTTGCGGAATATTTGCT
CAGTTAGTGGTTTACATGTCTGTTACAGCGCTCAGTCATAATCAACCGTGATAATCACCCTTAAT
AATCAACCGTAATAATCAACCGTTGTAGTCAACCGTAATAATCAACCGTACATACGGATTATTAG
GAAGCAAACACGCTCTAACCAGCTCGTGGCCGACATCCTTCAACCTAGCAACCGCCCTTCACCCC
CATAAATACCCACCACTCACTTACCAGTAAATCACTCGTACATAC
Right flanking sequence: Indices 110128 -- 110627
GTCTGACCTTATCGTGATAACGCCACTCGGGGAAACTTACGATCGCCGCGGCCACCCGTCACGGC
TATTCCTCCGATCCTTCCACTCAACCCATGGCACCATGGGCCAGTCACACAAACGTGTCAGTCAC
AAAACGTGTCTGGTTACACCAACCGCCATCTCCACGACCCAATTGCAATTTCACCTAGATTCCCA
TTCTACACTCTTACTTTCGAACTCTTCTCATCCACATCAACCTTACCTTCCTAAACTTCTCCGCT
AAATATTTCTCTCGTCTTCCCAGCCGTCTCCTCTTCGCGCTCGGTGTTTGCCTCGATCCCTCCGT
TAGCAGCACGGGTCTCTCCGCATCCTGATCCAGCCGTGATCAGGTTGGAACCCCGTAGTCCACCA
CACGTAGCCCCCAGGAAAACACCCGTTCCACCAACTTCGCGGCCCCTCTGGTCTTCGCCTCGAAC
CACCACCCGTTCCCGGTCCCCCGCCATTTGCCACCAACCCCACTT
Found at i:110090 original size:38 final size:37
Alignment explanation
Indices: 110055--110127 Score: 103
Period size: 38 Copynumber: 1.9 Consensus size: 37
110045 TCGTACATAC
*
110055 CTCACCTTCAACTACATCACTC-ACCTACCACTACATCG
1 CTCACCTGCAACTACATCACTCTA-CT-CCACTACATCG
*
110093 CTCACCTGCCACTACATCACTCTACTCCACTACAT
1 CTCACCTGCAACTACATCACTCTACTCCACTACAT
110128 GTCTGACCTT
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
37 9 0.28
38 22 0.69
39 1 0.03
ACGTcount: A:0.27, C:0.45, G:0.03, T:0.25
Consensus pattern (37 bp):
CTCACCTGCAACTACATCACTCTACTCCACTACATCG
Left flanking sequence: Indices 109555 -- 110054
ATTGGGGGGTGGTATGGGGTTGTAGGGTGCTCTACGGTGGTATTGGTTGGGGTATTAGTGGTTTT
CAGGAGGTTCGGGCGCGTTTTTGGTGGGTGACGCGTGTGGGTGGGTGTTTGGAGGCTGTGGTGGA
ACTTTCGCAGGGACGGGTAGTGATGAGAATTGACAGTGATGGTACTGCTAGAAGCGTTGGGTGTA
ATAATAGAGACGTTGGGGTGGTCAATGGCAAGGTAGCAGAATTGTCCGGTTGCGGAATATTTGCT
CAGTTAGTGGTTTACATGTCTGTTACAGCGCTCAGTCATAATCAACCGTGATAATCACCCTTAAT
AATCAACCGTAATAATCAACCGTTGTAGTCAACCGTAATAATCAACCGTACATACGGATTATTAG
GAAGCAAACACGCTCTAACCAGCTCGTGGCCGACATCCTTCAACCTAGCAACCGCCCTTCACCCC
CATAAATACCCACCACTCACTTACCAGTAAATCACTCGTACATAC
Right flanking sequence: Indices 110128 -- 110627
GTCTGACCTTATCGTGATAACGCCACTCGGGGAAACTTACGATCGCCGCGGCCACCCGTCACGGC
TATTCCTCCGATCCTTCCACTCAACCCATGGCACCATGGGCCAGTCACACAAACGTGTCAGTCAC
AAAACGTGTCTGGTTACACCAACCGCCATCTCCACGACCCAATTGCAATTTCACCTAGATTCCCA
TTCTACACTCTTACTTTCGAACTCTTCTCATCCACATCAACCTTACCTTCCTAAACTTCTCCGCT
AAATATTTCTCTCGTCTTCCCAGCCGTCTCCTCTTCGCGCTCGGTGTTTGCCTCGATCCCTCCGT
TAGCAGCACGGGTCTCTCCGCATCCTGATCCAGCCGTGATCAGGTTGGAACCCCGTAGTCCACCA
CACGTAGCCCCCAGGAAAACACCCGTTCCACCAACTTCGCGGCCCCTCTGGTCTTCGCCTCGAAC
CACCACCCGTTCCCGGTCCCCCGCCATTTGCCACCAACCCCACTT
Found at i:110264 original size:16 final size:17
Alignment explanation
Indices: 110234--110267 Score: 61
Period size: 16 Copynumber: 2.1 Consensus size: 17
110224 CACCATGGGC
110234 CAGTCACACAAACGTGT
1 CAGTCACACAAACGTGT
110251 CAGTCACA-AAACGTGT
1 CAGTCACACAAACGTGT
110267 C
1 C
110268 TGGTTACACC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 9 0.53
17 8 0.47
ACGTcount: A:0.35, C:0.29, G:0.18, T:0.18
Consensus pattern (17 bp):
CAGTCACACAAACGTGT
Left flanking sequence: Indices 109734 -- 110233
AGAAGCGTTGGGTGTAATAATAGAGACGTTGGGGTGGTCAATGGCAAGGTAGCAGAATTGTCCGG
TTGCGGAATATTTGCTCAGTTAGTGGTTTACATGTCTGTTACAGCGCTCAGTCATAATCAACCGT
GATAATCACCCTTAATAATCAACCGTAATAATCAACCGTTGTAGTCAACCGTAATAATCAACCGT
ACATACGGATTATTAGGAAGCAAACACGCTCTAACCAGCTCGTGGCCGACATCCTTCAACCTAGC
AACCGCCCTTCACCCCCATAAATACCCACCACTCACTTACCAGTAAATCACTCGTACATACCTCA
CCTTCAACTACATCACTCACCTACCACTACATCGCTCACCTGCCACTACATCACTCTACTCCACT
ACATGTCTGACCTTATCGTGATAACGCCACTCGGGGAAACTTACGATCGCCGCGGCCACCCGTCA
CGGCTATTCCTCCGATCCTTCCACTCAACCCATGGCACCATGGGC
Right flanking sequence: Indices 110268 -- 110767
TGGTTACACCAACCGCCATCTCCACGACCCAATTGCAATTTCACCTAGATTCCCATTCTACACTC
TTACTTTCGAACTCTTCTCATCCACATCAACCTTACCTTCCTAAACTTCTCCGCTAAATATTTCT
CTCGTCTTCCCAGCCGTCTCCTCTTCGCGCTCGGTGTTTGCCTCGATCCCTCCGTTAGCAGCACG
GGTCTCTCCGCATCCTGATCCAGCCGTGATCAGGTTGGAACCCCGTAGTCCACCACACGTAGCCC
CCAGGAAAACACCCGTTCCACCAACTTCGCGGCCCCTCTGGTCTTCGCCTCGAACCACCACCCGT
TCCCGGTCCCCCGCCATTTGCCACCAACCCCACTTGGTCACTAATTGCTTGGTCCGCGCTCGCAA
CCGCAGCCAGTCGCCTCCCTAGCACCTCAGAAAAACTCGCACAGCTGATGGCACCTCCCATGACT
GGAACTTGTGTCAGCACCATCAAGTGCCTTGGGGTGGCCTCGCTC
Found at i:111432 original size:19 final size:19
Alignment explanation
Indices: 111408--111452 Score: 65
Period size: 19 Copynumber: 2.4 Consensus size: 19
111398 GTGTGTTGAG
*
111408 GAGGTGCAAGAGGTTTCAA-
1 GAGGTGCAAG-GGGTTCAAT
111427 GAGGTGCAAGGGGTTCAAT
1 GAGGTGCAAGGGGTTCAAT
111446 GAGGTGC
1 GAGGTGC
111453 GAGGAGTGTA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
18 7 0.29
19 17 0.71
ACGTcount: A:0.27, C:0.11, G:0.42, T:0.20
Consensus pattern (19 bp):
GAGGTGCAAGGGGTTCAAT
Left flanking sequence: Indices 110908 -- 111407
GATCGCCCTGGGGTTGTTCTACACCGCGTACACCTACTCGCCTCCCTTCGAGAAGCACCCCTACT
TAATCTACTCGGGTTTGCTGGCAGCATTGGCCGGGCTCGGAGTGTGGTACGGCTACCCGAAGCCT
GGGTGCCACTGCCGCAAGCTGCACCGCACCACCTCCTCCTCCGTGAAGGCTCCCTCCGCCTCGGC
GGAACAGCTTGACAAGAGCTACGTCCATGTGTCGGACGAGGACCTGAGCGTAGTGCTGACGCCCT
CGCTGACCACTCCTTCGCTGCCCCAGTTGGCTCTGAACGAGGAGGAGTCTGCGATCGACACCGAG
GTGCTGCAGACGTTGTTGAAGAAGAAGGTCACCACCACTTTGGACAAGGCGGTGGTGGGCTACAC
GTTCTCGGGCGCGGTGGCGGCTGTCGGGTTTGTGTTGGGAGCGATCGGGGTGTTGGGCGATCTCT
ACTAGTTTGTATAAATGTATGATAGCAAGCGATGGGTGTGTTGAG
Right flanking sequence: Indices 111453 -- 111952
GAGGAGTGTAGGGAGGTGCGAGGTGCAGAGTGGTAGGGTAAGACCTTCGAGCGTGGGTCGCGATG
GTTGTCGCTGGTTGGCCCCATCGTCGGGTCGGGGGTGGCGTGTTGTAACTTTTTGCCATCACTAA
TTATACCAACTTTTGCTACAATTCCTGTAATTTTGGAAAAGTTCTGGGAAACCAGCCAAGTTGGG
GTAGGTGGATGGTTCAACTCGCAGGTTGGGTATTGTAAAATGCTCAGTACAAGATTAGCGTCAAG
TAGAGACGTAGGTCTGGCAGCCACGGAGGAAATGAAATAAACACACCATGTGAAGTACCCATCCT
AGTTTACGCCCAACGCAAATACGTACGTTCGGTAACCCTGATAATGGTTCGATCGAGGCCTTTGG
GTGGTGTTTCAGAATACTCAGCCCATTCTACCAGCTAAAACACCCTACAATGAGCGTACGACGCA
CGCTAACTCAGACCCACTTCACTCAAACGCGTTTCCCCATTGTAC
Found at i:112087 original size:12 final size:12
Alignment explanation
Indices: 112070--112095 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
112060 TCCCCCATAC
112070 CCACCCTGCCTA
1 CCACCCTGCCTA
112082 CCACCCTGCCTA
1 CCACCCTGCCTA
112094 CC
1 CC
112096 CACCGCCTAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.15, C:0.62, G:0.08, T:0.15
Consensus pattern (12 bp):
CCACCCTGCCTA
Left flanking sequence: Indices 111570 -- 112069
TTGCCATCACTAATTATACCAACTTTTGCTACAATTCCTGTAATTTTGGAAAAGTTCTGGGAAAC
CAGCCAAGTTGGGGTAGGTGGATGGTTCAACTCGCAGGTTGGGTATTGTAAAATGCTCAGTACAA
GATTAGCGTCAAGTAGAGACGTAGGTCTGGCAGCCACGGAGGAAATGAAATAAACACACCATGTG
AAGTACCCATCCTAGTTTACGCCCAACGCAAATACGTACGTTCGGTAACCCTGATAATGGTTCGA
TCGAGGCCTTTGGGTGGTGTTTCAGAATACTCAGCCCATTCTACCAGCTAAAACACCCTACAATG
AGCGTACGACGCACGCTAACTCAGACCCACTTCACTCAAACGCGTTTCCCCATTGTACTGCTCAA
CTCCAAAATCATCCTAGCGTAGCTCTCGTAAGTAAAAGCAAACGCTTGTCTTTCCCCACCCCACC
TGACCTCACTGCCGTCCTCTGTTCTCCGTCCTACTTCCCCCATAC
Right flanking sequence: Indices 112096 -- 112595
CACCGCCTACCCTCCGCCTACCCACACCTGCACACAGCCCGCACCATCCAGCTTGCAAAAACCAA
CATCAAAACAACCTTGCCACAGCTGCGGCACGGGTGTAATGATATTCCAGCGCGAGGGCCAGCCG
CTCGACATATATATCGATGGTAACGACGACCACTACCGGTTGCTCACCGAACACGTGGAAACCAA
CGGGGGAAACGTGGTTCCGCGCCCGTCCCCGTCCCTGATCACCGTGGCTCTGCGTCCGCGCGGAG
GAGACGTCCGAGGCGACTGGGTAATGGACCTGGTCCAGGGTGGGGTGATGCTTCCCCTCGACCAG
TACGTCACAGTGGACCCCCGGGTGGCTGCCCAGGCGATGGCGTTGGCGGCAGTAGAGGCACGCCA
TGCAAAGCCCGGGCCCAGGGGACACAACAAGTTCACCGAGGAGAAGGACGCGTACATTTTGGAAC
GGGTTCGAGAACAACCGAAAATGCGCAAGCTGTTGCAGTTCTACA
Found at i:112105 original size:11 final size:12
Alignment explanation
Indices: 112067--112120 Score: 60
Period size: 11 Copynumber: 4.6 Consensus size: 12
112057 ACTTCCCCCA
112067 TACCCACCCTGCC
1 TACCCA-CCTGCC
112080 TA-CCACCCTGCC
1 TACCCA-CCTGCC
112092 TACCCACC-GCC
1 TACCCACCTGCC
*
112103 TACCCTCC-GCC
1 TACCCACCTGCC
112114 TACCCAC
1 TACCCAC
112121 ACCTGCACAC
Statistics
Matches: 38, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
11 19 0.50
12 14 0.37
13 5 0.13
ACGTcount: A:0.17, C:0.61, G:0.07, T:0.15
Consensus pattern (12 bp):
TACCCACCTGCC
Left flanking sequence: Indices 111567 -- 112066
TTTTTGCCATCACTAATTATACCAACTTTTGCTACAATTCCTGTAATTTTGGAAAAGTTCTGGGA
AACCAGCCAAGTTGGGGTAGGTGGATGGTTCAACTCGCAGGTTGGGTATTGTAAAATGCTCAGTA
CAAGATTAGCGTCAAGTAGAGACGTAGGTCTGGCAGCCACGGAGGAAATGAAATAAACACACCAT
GTGAAGTACCCATCCTAGTTTACGCCCAACGCAAATACGTACGTTCGGTAACCCTGATAATGGTT
CGATCGAGGCCTTTGGGTGGTGTTTCAGAATACTCAGCCCATTCTACCAGCTAAAACACCCTACA
ATGAGCGTACGACGCACGCTAACTCAGACCCACTTCACTCAAACGCGTTTCCCCATTGTACTGCT
CAACTCCAAAATCATCCTAGCGTAGCTCTCGTAAGTAAAAGCAAACGCTTGTCTTTCCCCACCCC
ACCTGACCTCACTGCCGTCCTCTGTTCTCCGTCCTACTTCCCCCA
Right flanking sequence: Indices 112121 -- 112620
ACCTGCACACAGCCCGCACCATCCAGCTTGCAAAAACCAACATCAAAACAACCTTGCCACAGCTG
CGGCACGGGTGTAATGATATTCCAGCGCGAGGGCCAGCCGCTCGACATATATATCGATGGTAACG
ACGACCACTACCGGTTGCTCACCGAACACGTGGAAACCAACGGGGGAAACGTGGTTCCGCGCCCG
TCCCCGTCCCTGATCACCGTGGCTCTGCGTCCGCGCGGAGGAGACGTCCGAGGCGACTGGGTAAT
GGACCTGGTCCAGGGTGGGGTGATGCTTCCCCTCGACCAGTACGTCACAGTGGACCCCCGGGTGG
CTGCCCAGGCGATGGCGTTGGCGGCAGTAGAGGCACGCCATGCAAAGCCCGGGCCCAGGGGACAC
AACAAGTTCACCGAGGAGAAGGACGCGTACATTTTGGAACGGGTTCGAGAACAACCGAAAATGCG
CAAGCTGTTGCAGTTCTACAAAGAGTTGGCCGAGACCGAGGTGTT
Found at i:113942 original size:16 final size:16
Alignment explanation
Indices: 113921--113957 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
113911 CCGACGGGGA
113921 ATTCCGCGAGACGCCC
1 ATTCCGCGAGACGCCC
**
113937 ATTCCGCTTGACGCCC
1 ATTCCGCGAGACGCCC
113953 ATTCC
1 ATTCC
113958 ACCAGTTGCC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.16, C:0.43, G:0.19, T:0.22
Consensus pattern (16 bp):
ATTCCGCGAGACGCCC
Left flanking sequence: Indices 113421 -- 113920
TGATGCCCATCGACACCCAGATGGTGGCGCTGCAGCTGTTGCGGTACTTGCCCGAAGAGGTCACC
GTGGACGATTTGGTGGCCACCGAGGTCCAGCCGTCGCAGTTGGCGGCCACCGCCCTGGCGATCGT
CGAGGCCGACAACATCGCCAGCGAGTTGGAACAGGCGGGGTTCACCGCGGGGTACGTCGAGCATA
TACGTCTCATGTGCTCGGACGACCGCTACGTGATCCAGAACTACTTGCACCGGGTGGCTCCTTTG
CTCTGTGGTGCCCAGGAGGCGCTCGATGCGGTGGTGAGACCGGACTTGCCCCACATGTGGACGCT
CGACGAGGACCGCGAGTTGGTGCGCAAGGACAAGCGCGACATGACCAACCCGGAGACGTTACGGT
TCGACTATTTGATGGAGAACGCGGAGTTGATCGACCCCAAAATATTTCAGTAGCTCGTCTGTCGC
CATGGCAACCTCTGCACCACGCCACTCACCGGAGCCCGACGGGGA
Right flanking sequence: Indices 113958 -- 114457
ACCAGTTGCCGCTTTGGGCACAGGCATTCGTCGTCTATGTACTATCATGAGACCATAATTAATAA
GCAATGCACATCTAATCACAAACAAACCTGCCGGCGATCGGCATCGCAATCATCGCCTTAGCAGC
AACTACCCCAATCAAGCAATCGGATTGTTTACCATCTACGATTTAGTGAGATCGGTTACGAGTCC
TGGGTATTGTTTGTTTACGTTTGTTGCAAAAGAAACGAACCGCGTTTCAGCTGCAACGCAAGCCA
AGCGAACGCCTTAGACTAGTCCTAGAGGATATAAAAGCGGTGGATCCGCCTTTCTTCAAGGATCT
TGTGACCACACTGGTCAAGGTTTAGTTAAATCGAAAAACTATACTGCTCCGCTTTGTGTAAGATT
GTAGACACCCCTACGGCACCTGCGACGCGTCGCGAGATAAGTTTTTTTTTTCAGTCGTGTCTAAA
ACAAAAAAACCTGTATTAACCAATAATGAAGAGAAGTAAAAAGCC
Found at i:121847 original size:16 final size:17
Alignment explanation
Indices: 121787--121857 Score: 58
Period size: 18 Copynumber: 4.2 Consensus size: 17
121777 CCGAAAAATC
*
121787 CCCTTT-ACACCCTAAA
1 CCCTTTCACACCCTATA
* *
121803 TCCCCTTCACATCCT-TAA
1 -CCCTTTCACACCCTAT-A
*
121821 CCTCCTTCACACCCT-TA
1 CC-CTTTCACACCCTATA
121838 CCCTTTCACACCCTATA
1 CCCTTTCACACCCTATA
121855 CCC
1 CCC
121858 CTTGACACCA
Statistics
Matches: 45, Mismatches: 5, Indels: 8
0.78 0.09 0.14
Matches are distributed among these distances:
16 11 0.24
17 15 0.33
18 19 0.42
ACGTcount: A:0.23, C:0.49, G:0.00, T:0.28
Consensus pattern (17 bp):
CCCTTTCACACCCTATA
Left flanking sequence: Indices 121287 -- 121786
TGGAGATAAGCAATTGATATTTTTTACCCGCTGGAAAAAACCCGGAATTACAATTCCACGATCGG
GCCGGTATCGGCAGCACGAAAAATGACACGATTCAACGGAAACGCAGACACCATCGCCGAAATCT
TTACTGGTGATGGTGGCGACGGTTTATCATAGCGGTCCGTGTGAGGACGCAGTTTGAGCGAATCA
GAGAGGGGTTGTTTGTCATTGCTGAATTAGGCAATTACGCGCAAGATTATGGCCAGCCACAGAGA
TAAGGACTAGCAACCGGAGCACCGGGTAATTAGCAGTTGGCAACGCGAGCCAGCCACGGCAAAAT
CACCTCAAGGACCTGGTAACGATTTCTAGCATCCACGCTCTGGAATCCCCTGAGCAGCCGGAATA
CGCCGTAATACGCACCTGCTCGTAAACCTCATAAATCACAGTAGACCCATTCCCCATGTCAACCC
CTGTCAACCCCTTCACTAAAAATTCACATTCAGGCCCGAAAAATC
Right flanking sequence: Indices 121858 -- 122357
CTTGACACCATCCCACACACCCTAAAACACCTCCATTCTCTATAAACTCAACACGTTATACAACA
GTTTCAACCGGTTGAACCGTACCATGTTGGTCACCTCGCGGTGCTGCAACATCTTTAGCGTTTTA
AGCTCCAGCTCCAACAACAACTCCTCCTCGTGGCCCTTGACGTCCTCACGGTCGCACTTGGCCAA
GAGAATCTTGTGGTCGTCCTTGAACTCGTCGATCCGTGCCAACACCTGCGCCATGTCAAACATGA
GCAGCGACCGCAACGCGTCGTAGGCGTGCCGGGGGTTGTGGCGGAACAAAAAGAACGTCTTCATC
GCCGCCCGGTCCGCCGACCGCGGCACCTCCTGGATCTCCACCATGTTCATCATGATCAACTTGTA
GAGCTCGTTGCGCACCGTCTTCTCCCGGAGCAACACCGCGTTCAGGATCAGCTTCTCGTCGCCCA
CCTTCTGTGCCTTGAGACACCGGAGCACCCGGAACGCGTTGTCGC
Found at i:121865 original size:17 final size:16
Alignment explanation
Indices: 121804--121866 Score: 72
Period size: 17 Copynumber: 3.8 Consensus size: 16
121794 CACCCTAAAT
*
121804 CCCCTTCACATCCTTAA
1 CCCCTTCACACCCTT-A
121821 CCTCCTTCACACCCTTA
1 CC-CCTTCACACCCTTA
*
121838 CCCTTTCACACCCTATA
1 CCCCTTCACACCCT-TA
*
121855 CCCCTTGACACC
1 CCCCTTCACACC
121867 ATCCCACACA
Statistics
Matches: 40, Mismatches: 4, Indels: 4
0.83 0.08 0.08
Matches are distributed among these distances:
16 11 0.28
17 17 0.43
18 12 0.30
ACGTcount: A:0.21, C:0.51, G:0.02, T:0.27
Consensus pattern (16 bp):
CCCCTTCACACCCTTA
Left flanking sequence: Indices 121304 -- 121803
TATTTTTTACCCGCTGGAAAAAACCCGGAATTACAATTCCACGATCGGGCCGGTATCGGCAGCAC
GAAAAATGACACGATTCAACGGAAACGCAGACACCATCGCCGAAATCTTTACTGGTGATGGTGGC
GACGGTTTATCATAGCGGTCCGTGTGAGGACGCAGTTTGAGCGAATCAGAGAGGGGTTGTTTGTC
ATTGCTGAATTAGGCAATTACGCGCAAGATTATGGCCAGCCACAGAGATAAGGACTAGCAACCGG
AGCACCGGGTAATTAGCAGTTGGCAACGCGAGCCAGCCACGGCAAAATCACCTCAAGGACCTGGT
AACGATTTCTAGCATCCACGCTCTGGAATCCCCTGAGCAGCCGGAATACGCCGTAATACGCACCT
GCTCGTAAACCTCATAAATCACAGTAGACCCATTCCCCATGTCAACCCCTGTCAACCCCTTCACT
AAAAATTCACATTCAGGCCCGAAAAATCCCCTTTACACCCTAAAT
Right flanking sequence: Indices 121867 -- 122366
ATCCCACACACCCTAAAACACCTCCATTCTCTATAAACTCAACACGTTATACAACAGTTTCAACC
GGTTGAACCGTACCATGTTGGTCACCTCGCGGTGCTGCAACATCTTTAGCGTTTTAAGCTCCAGC
TCCAACAACAACTCCTCCTCGTGGCCCTTGACGTCCTCACGGTCGCACTTGGCCAAGAGAATCTT
GTGGTCGTCCTTGAACTCGTCGATCCGTGCCAACACCTGCGCCATGTCAAACATGAGCAGCGACC
GCAACGCGTCGTAGGCGTGCCGGGGGTTGTGGCGGAACAAAAAGAACGTCTTCATCGCCGCCCGG
TCCGCCGACCGCGGCACCTCCTGGATCTCCACCATGTTCATCATGATCAACTTGTAGAGCTCGTT
GCGCACCGTCTTCTCCCGGAGCAACACCGCGTTCAGGATCAGCTTCTCGTCGCCCACCTTCTGTG
CCTTGAGACACCGGAGCACCCGGAACGCGTTGTCGCCAAACGTCG
Found at i:123763 original size:10 final size:10
Alignment explanation
Indices: 123748--123797 Score: 73
Period size: 10 Copynumber: 5.0 Consensus size: 10
123738 GGTTTACGGT
123748 GGTGGGATGG
1 GGTGGGATGG
123758 GGTGGGATGG
1 GGTGGGATGG
123768 GGTGGGATGG
1 GGTGGGATGG
* *
123778 GGTGGGGTTG
1 GGTGGGATGG
*
123788 GGTGGAATGG
1 GGTGGGATGG
123798 TGTTGGTTTA
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
10 35 1.00
ACGTcount: A:0.10, C:0.00, G:0.68, T:0.22
Consensus pattern (10 bp):
GGTGGGATGG
Left flanking sequence: Indices 123248 -- 123747
GTCTGGTCGGAGAGGCCTCCGTCGGGGCCACAGTAGTCGGCGATCTTCACCGACCCATTCGCAAG
CACGTTCTGGACGATCTGGGCGGCGTCGGACCCGTAGCGGGCCTGCACGTGGGCGATGATGTCGC
CAGCGTGGAGCAATACGTACAATCCCTCGGGGTTGAACAGGTAGACCACGTCCTTCTTCAGCTGC
CAGTAGAACAAGCAGTTGAGCTGGGTCAACAGCACCACTGCCAGCCGGGTGGCCTTGGCTCCGAG
GCCCGTCTTGTGGCTGATCTCGCGCACGGTAAGGCGCCCGTACGAGGCTAGCGCCTCTACGACCT
TGGCGCCGGGGTCGCCGAGGTAGAGGCGGGCCACCGTGGCAAAGAGCCGGTGGTCCGGGGGCTGT
GGTGGGTACCCCGGTTGTGGATGCTGGGTCATGGTGATGAGTGCGATGAGCGAAATTTGATGTGG
TTGTGAGGTGGGTGAAGGGGAGAAGAGGTGGGGTGGGTTTACGGT
Right flanking sequence: Indices 123798 -- 124297
TGTTGGTTTATCGGGCTGGTGGGTGTGTGTGGCTAGAGTGTGGAAGGATGTGTGGATCAGGGTCG
ATCGGAGGCGGGGAAGGAAGAAGGAGGGAGAAAGATGGAAAGGGAAGGGAAGAGATGGGAAGGGA
AAAGAAGGGGATAGAGTGGTTTGGGGATTGGGTGGTTAGAGGGGGTGGTGTTGGATCACGCGTGG
TGTGGGTAATGGTGTAGATAGGGTTGGTGTAGGTGGTTGTTTGGTGATGCGGTTGATGTAGTGCG
ACAGTGGTGAGGCAGGGTTAAGGGGTCAAGAGGGGGTAGGGCATGTAGTAAGGGTGCTGGGGTTG
TGTAGAGGGCGCAATTGGACTAGACTGTTGTGTTTCCTGGGCTGCCAGTGTGGTGCTTGGTTGAT
TTTTCACCCCCTGATCCAGCCCTAGTTGATGACGTAATGAGAGAGAGAGAGAGAGAAAGATGATT
TGGCAGTAGCAATACCCGAACGTGTGGAAGTAGGCTTATTGAAGG
Found at i:123784 original size:5 final size:5
Alignment explanation
Indices: 123748--123792 Score: 54
Period size: 5 Copynumber: 9.0 Consensus size: 5
123738 GGTTTACGGT
* * * *
123748 GGTGG GATGG GGTGG GATGG GGTGG GATGG GGTGG GGTTG GGTGG
1 GGTGG GGTGG GGTGG GGTGG GGTGG GGTGG GGTGG GGTGG GGTGG
123793 AATGGTGTTG
Statistics
Matches: 32, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
5 32 1.00
ACGTcount: A:0.07, C:0.00, G:0.71, T:0.22
Consensus pattern (5 bp):
GGTGG
Left flanking sequence: Indices 123248 -- 123747
GTCTGGTCGGAGAGGCCTCCGTCGGGGCCACAGTAGTCGGCGATCTTCACCGACCCATTCGCAAG
CACGTTCTGGACGATCTGGGCGGCGTCGGACCCGTAGCGGGCCTGCACGTGGGCGATGATGTCGC
CAGCGTGGAGCAATACGTACAATCCCTCGGGGTTGAACAGGTAGACCACGTCCTTCTTCAGCTGC
CAGTAGAACAAGCAGTTGAGCTGGGTCAACAGCACCACTGCCAGCCGGGTGGCCTTGGCTCCGAG
GCCCGTCTTGTGGCTGATCTCGCGCACGGTAAGGCGCCCGTACGAGGCTAGCGCCTCTACGACCT
TGGCGCCGGGGTCGCCGAGGTAGAGGCGGGCCACCGTGGCAAAGAGCCGGTGGTCCGGGGGCTGT
GGTGGGTACCCCGGTTGTGGATGCTGGGTCATGGTGATGAGTGCGATGAGCGAAATTTGATGTGG
TTGTGAGGTGGGTGAAGGGGAGAAGAGGTGGGGTGGGTTTACGGT
Right flanking sequence: Indices 123793 -- 124292
AATGGTGTTGGTTTATCGGGCTGGTGGGTGTGTGTGGCTAGAGTGTGGAAGGATGTGTGGATCAG
GGTCGATCGGAGGCGGGGAAGGAAGAAGGAGGGAGAAAGATGGAAAGGGAAGGGAAGAGATGGGA
AGGGAAAAGAAGGGGATAGAGTGGTTTGGGGATTGGGTGGTTAGAGGGGGTGGTGTTGGATCACG
CGTGGTGTGGGTAATGGTGTAGATAGGGTTGGTGTAGGTGGTTGTTTGGTGATGCGGTTGATGTA
GTGCGACAGTGGTGAGGCAGGGTTAAGGGGTCAAGAGGGGGTAGGGCATGTAGTAAGGGTGCTGG
GGTTGTGTAGAGGGCGCAATTGGACTAGACTGTTGTGTTTCCTGGGCTGCCAGTGTGGTGCTTGG
TTGATTTTTCACCCCCTGATCCAGCCCTAGTTGATGACGTAATGAGAGAGAGAGAGAGAGAAAGA
TGATTTGGCAGTAGCAATACCCGAACGTGTGGAAGTAGGCTTATT
Found at i:123934 original size:20 final size:20
Alignment explanation
Indices: 123891--123934 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
123881 AGAAGGAGGG
*
123891 AGAA-AGATGGAAAGGGAAG
1 AGAAGAGATGGAAAGGGAAA
* *
123910 GGAAGAGATGGGAAGGGAAA
1 AGAAGAGATGGAAAGGGAAA
123930 AGAAG
1 AGAAG
123935 GGGATAGAGT
Statistics
Matches: 20, Mismatches: 4, Indels: 1
0.80 0.16 0.04
Matches are distributed among these distances:
19 3 0.15
20 17 0.85
ACGTcount: A:0.50, C:0.00, G:0.45, T:0.05
Consensus pattern (20 bp):
AGAAGAGATGGAAAGGGAAA
Left flanking sequence: Indices 123391 -- 123890
TACGTACAATCCCTCGGGGTTGAACAGGTAGACCACGTCCTTCTTCAGCTGCCAGTAGAACAAGC
AGTTGAGCTGGGTCAACAGCACCACTGCCAGCCGGGTGGCCTTGGCTCCGAGGCCCGTCTTGTGG
CTGATCTCGCGCACGGTAAGGCGCCCGTACGAGGCTAGCGCCTCTACGACCTTGGCGCCGGGGTC
GCCGAGGTAGAGGCGGGCCACCGTGGCAAAGAGCCGGTGGTCCGGGGGCTGTGGTGGGTACCCCG
GTTGTGGATGCTGGGTCATGGTGATGAGTGCGATGAGCGAAATTTGATGTGGTTGTGAGGTGGGT
GAAGGGGAGAAGAGGTGGGGTGGGTTTACGGTGGTGGGATGGGGTGGGATGGGGTGGGATGGGGT
GGGGTTGGGTGGAATGGTGTTGGTTTATCGGGCTGGTGGGTGTGTGTGGCTAGAGTGTGGAAGGA
TGTGTGGATCAGGGTCGATCGGAGGCGGGGAAGGAAGAAGGAGGG
Right flanking sequence: Indices 123935 -- 124434
GGGATAGAGTGGTTTGGGGATTGGGTGGTTAGAGGGGGTGGTGTTGGATCACGCGTGGTGTGGGT
AATGGTGTAGATAGGGTTGGTGTAGGTGGTTGTTTGGTGATGCGGTTGATGTAGTGCGACAGTGG
TGAGGCAGGGTTAAGGGGTCAAGAGGGGGTAGGGCATGTAGTAAGGGTGCTGGGGTTGTGTAGAG
GGCGCAATTGGACTAGACTGTTGTGTTTCCTGGGCTGCCAGTGTGGTGCTTGGTTGATTTTTCAC
CCCCTGATCCAGCCCTAGTTGATGACGTAATGAGAGAGAGAGAGAGAGAAAGATGATTTGGCAGT
AGCAATACCCGAACGTGTGGAAGTAGGCTTATTGAAGGAAGTAGGCTTATTTAAGGTTCATGTTT
TTCTTCTGACAGCTAAAGCTGGCTTCTGGCCCAACTGTGTTGAGTGACACAATCCTATGACACGA
GTATAGTCCACGACTGTACACACTGTACACGACTGTTGATCACCC
Found at i:124301 original size:18 final size:18
Alignment explanation
Indices: 124278--124315 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
124268 CCGAACGTGT
124278 GGAAGTAGGCTTATTGAA
1 GGAAGTAGGCTTATTGAA
*
124296 GGAAGTAGGCTTATTTAA
1 GGAAGTAGGCTTATTGAA
124314 GG
1 GG
124316 TTCATGTTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.32, C:0.05, G:0.34, T:0.29
Consensus pattern (18 bp):
GGAAGTAGGCTTATTGAA
Left flanking sequence: Indices 123778 -- 124277
GGTGGGGTTGGGTGGAATGGTGTTGGTTTATCGGGCTGGTGGGTGTGTGTGGCTAGAGTGTGGAA
GGATGTGTGGATCAGGGTCGATCGGAGGCGGGGAAGGAAGAAGGAGGGAGAAAGATGGAAAGGGA
AGGGAAGAGATGGGAAGGGAAAAGAAGGGGATAGAGTGGTTTGGGGATTGGGTGGTTAGAGGGGG
TGGTGTTGGATCACGCGTGGTGTGGGTAATGGTGTAGATAGGGTTGGTGTAGGTGGTTGTTTGGT
GATGCGGTTGATGTAGTGCGACAGTGGTGAGGCAGGGTTAAGGGGTCAAGAGGGGGTAGGGCATG
TAGTAAGGGTGCTGGGGTTGTGTAGAGGGCGCAATTGGACTAGACTGTTGTGTTTCCTGGGCTGC
CAGTGTGGTGCTTGGTTGATTTTTCACCCCCTGATCCAGCCCTAGTTGATGACGTAATGAGAGAG
AGAGAGAGAGAAAGATGATTTGGCAGTAGCAATACCCGAACGTGT
Right flanking sequence: Indices 124316 -- 124815
TTCATGTTTTTCTTCTGACAGCTAAAGCTGGCTTCTGGCCCAACTGTGTTGAGTGACACAATCCT
ATGACACGAGTATAGTCCACGACTGTACACACTGTACACGACTGTTGATCACCCACCATTACTCA
AACCTTAACGTTTAGTCTAGGCGCTGAAAGAAGGGAACGGCCAAACCTACGCTCAGATCAGCACG
CCTGCTTAACCTAACAAGCTTCACTACCTTTTCTCCACCATTTTACAACTGACGAGAACCAATCG
ATTGCCTCTATAACCTCTCTCGTCCTCCATTCCACCATTCCACCATTTCTTCATTCCTCCATTCC
CTCCCTCTCCCTCCCTCTCCCTCCCACTTCCTCCCTCTCTTTCCCACTTCCTCCCCTCTCCTCCC
TTCCTTTTCTCTTTCGCAACGCTACCGAAAAATCATCACCACCCCACCACCTCCACCCCATGGTC
AAAACCGAGCTCAAGGCGGCCAAACAGGCCATTGAGAGCAACGAC
Done.