Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: scaffold20
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 668238
ACGTcount: A:0.25, C:0.26, G:0.25, T:0.24
File 1 of 2
Found at i:1091 original size:39 final size:39
Alignment explanation
Indices: 1047--1132 Score: 138
Period size: 39 Copynumber: 2.2 Consensus size: 39
1037 CCTTTCGCAC
*
1047 CTAATAACAGGATG-TAATAAACCTGATAACTAGACGTAA
1 CTAATAAAAGGA-GATAATAAACCTGATAACTAGACGTAA
*
1086 CTAATAAAAGGAGATAATAAACCTGATAACTAGATGTAA
1 CTAATAAAAGGAGATAATAAACCTGATAACTAGACGTAA
1125 CTAATAAA
1 CTAATAAA
1133 GAATTGTTGA
Statistics
Matches: 44, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
38 1 0.02
39 43 0.98
ACGTcount: A:0.50, C:0.13, G:0.14, T:0.23
Consensus pattern (39 bp):
CTAATAAAAGGAGATAATAAACCTGATAACTAGACGTAA
Left flanking sequence: Indices 547 -- 1046
CTCCGGCTAAGGGGTGCTTAATTCATTTTTTCCAACGATGAGAAATGTCAACGTTCGGTAATGCG
AGGAGAAATAATCACGTAAAGTGTAATAGCGGGAATGTTGTCAAGAAACTCAATCAGAAGTCAAA
TAACGTGATCGTTCAGTAGCCCACAATTCTAGTTTGAACCTATCCACAATTCCACAGTTTTCTAC
CAAAACTCCAGTCAATCGACCAATAGTATGAACTTAAAAGTGATTCGGAAAGAAGAGAGATGAAT
TTAGTGGACAAACCTTGGAATTAGATTCATGCCTAAAACCGGCCTAAAACCAAAATTTACTATCA
GCTATCATTCGAAAATTGGATAGCGCATTTAACAGTGCATATGGTACGAAACTGGGGTCAGCGGC
AAACTTCTCACAAGTAGGACTTGAGATGTGTCTGAGTGAGTTACGGCCATTCTCGCTACTTCAGT
GACTCCAACCTCACGTAACTTGCAATAAAGTAGGCCCTTTCGCAC
Right flanking sequence: Indices 1133 -- 1632
GAATTGTTGAAAAACGTTACCAGCCGGTGGGTTAGTTTCCTGCTCGGCAGGAGGGCTAGCCTTAG
GCGGAGGGTCAGTCATAGCAGTCATCCCTATCTGTTCACTGAATCAATGGATAGTCTCAAATATA
GGCTATTCGCTTAATCAATAAACTCACGCTCGAACAGTCGCTGCCTGTGTCCTTGTGCTAGTGCG
ACGGGTAGTAGTATGAATGTCCGAACTATGGGTTTAGCCAGTAGCTGAATTGATCCGTTGGGTTA
ATATGATAGATAAGGCGTATCTTCCTATATGGTCATCCAGGGACTATAGTTCAATACCCTTGTGA
CGTTTCTTTTGGTAACAAGCGGGGTATAGATTACAAGCGAGTACCACACACGTGGTACCGCTAGG
GTAATGGACTATATAACCTTTGTATGACCATATAGCAAAGTACGCCTTAATTATCATGAAATAAC
TTAGGTCAAGGATTCTTTCTCACTGCTTAGCCACGGGTATAGACT
Found at i:1661 original size:23 final size:23
Alignment explanation
Indices: 1631--1674 Score: 88
Period size: 23 Copynumber: 1.9 Consensus size: 23
1621 CGGGTATAGA
1631 CTGATGGCTGCTAACGCTGCGTG
1 CTGATGGCTGCTAACGCTGCGTG
1654 CTGATGGCTGCTAACGCTGCG
1 CTGATGGCTGCTAACGCTGCG
1675 CGCAGCGCAC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.14, C:0.27, G:0.34, T:0.25
Consensus pattern (23 bp):
CTGATGGCTGCTAACGCTGCGTG
Left flanking sequence: Indices 1131 -- 1630
AAGAATTGTTGAAAAACGTTACCAGCCGGTGGGTTAGTTTCCTGCTCGGCAGGAGGGCTAGCCTT
AGGCGGAGGGTCAGTCATAGCAGTCATCCCTATCTGTTCACTGAATCAATGGATAGTCTCAAATA
TAGGCTATTCGCTTAATCAATAAACTCACGCTCGAACAGTCGCTGCCTGTGTCCTTGTGCTAGTG
CGACGGGTAGTAGTATGAATGTCCGAACTATGGGTTTAGCCAGTAGCTGAATTGATCCGTTGGGT
TAATATGATAGATAAGGCGTATCTTCCTATATGGTCATCCAGGGACTATAGTTCAATACCCTTGT
GACGTTTCTTTTGGTAACAAGCGGGGTATAGATTACAAGCGAGTACCACACACGTGGTACCGCTA
GGGTAATGGACTATATAACCTTTGTATGACCATATAGCAAAGTACGCCTTAATTATCATGAAATA
ACTTAGGTCAAGGATTCTTTCTCACTGCTTAGCCACGGGTATAGA
Right flanking sequence: Indices 1675 -- 2174
CGCAGCGCACCGAGAAAATTCTCCCATAGTTACACAAAACTTTACTTTTAGTCAATACAGAAATC
TTTATTACTTACGCCTTAGCAACTTTAGTATCCAACCCATAGTATAGACACCGACGTTGCCCTGT
TAGAACCTAAAACTACTGTAACTCAATTGATTAGAAAAGAACCGCTTAAGACAACAAATATCTCT
CAGCCCTCTTCTACCCAGAACTCTCTCGCGAACGTCAGCTCTATCTTGTTGAATCGCTCGACTGC
CACTGGTCGAATCAGCAAACAGAAGACGTCTTTCCAATAGTTAAAGTAAGATAAATAATAAATCT
TATCTACACCAAAAGGCAGGTATATGATTGAATCAGGAGTGTTTGCCCATCAACCGCTGCAAACG
ATATGCACTCTCAACCATGGCTGACACACCAACATATGGAGAGCCTCCTCCTGCAACTAATACCA
GGTAGCCACTTACTTGGATAACACTACTTTTCACACACCATAGAT
Found at i:25247 original size:21 final size:21
Alignment explanation
Indices: 25223--25270 Score: 78
Period size: 21 Copynumber: 2.3 Consensus size: 21
25213 CCAATACAAG
* *
25223 AAGTAAGGGTATGTTAGGTTA
1 AAGTAAAGGTATGTTAAGTTA
25244 AAGTAAAGGTATGTTAAGTTA
1 AAGTAAAGGTATGTTAAGTTA
25265 AAGTAA
1 AAGTAA
25271 CTTAATGTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.42, C:0.00, G:0.27, T:0.31
Consensus pattern (21 bp):
AAGTAAAGGTATGTTAAGTTA
Left flanking sequence: Indices 24723 -- 25222
TTCACATTCTCAGCAAAGTAAGGGTTCTGAGTCTTGTGGAAGCGCTGCAACTTTTGTACACAGTC
GGCAGTCTGTAATCCCATCAAGAGGAGGAAAAAGGAAACAAACATGTTGTAATGCTTATTCTTCT
GCAAGAAGAAAGTGAAGTCAACAACCTGCTTGCGGACGGCGAACGGAAGAGGTGTCACCAAGACG
AAGAGAAATGACATTTGCGCCACGAGAGTGGCGAAGACGATAGACATTTGAAGCGACATTTCGGG
ACTCCTGCTAATTGAGTTAGTCCTGACGGTAAAAATCAGTGGACCTAATTGATTCAATGAAGATT
TTGGATATAGTTTAGGGATTGGGTCTTGCTGCTTACTTACAGAATAATTCAGTGGCGATATGATT
TTCAGTTCGACACAAGCGCACTTGTTATTGCTATTCGTTAATGCAGGATCGGGGACCACCATATT
TGGTGATAATATTAGAAAATGGCTCTAATTAATGTCCAATACAAG
Right flanking sequence: Indices 25271 -- 25770
CTTAATGTTTTTATCGAAAGTTGCCATCATTAACGGGGAGTGAGTTGCTTCCACCGCAAAAGTAA
GCAACGAATATAATACCGTTATAAGATTTCAGTAACCAGCATTCAAAAGAGGCCACCTCGAATGA
TAGTGAGGCGTTTGTATTTGAATAGATTTGAGGTATTAGGTTAGGTGCGAGAAAATGCGAAAGTA
TCGAAAAACGAACTGTTACGCAAACGGGATTCTTCTCAACGCACACACCGAATCACCTTCGACAG
CTGGGGACTGCGCGAAACAAGAATCTTGGGTCACAACTTCAGTTTTGTTTAAACAACCACCCATG
GCCTCCATTCAAGCAGCTGCCCCTAGCACAGGTAGTCCTGATGCTGAACTCACTGGAGCCAAGCT
GCTCAACGATGAAAGCATTTACCAATGGATATCCGAACTAGTAAACGGCACATCCAACCGCGAAA
GAGCCTTATTGGAACTCGGTAAGAAACGTGAACAATATGATGATC
Found at i:31729 original size:18 final size:15
Alignment explanation
Indices: 31694--31756 Score: 108
Period size: 15 Copynumber: 4.2 Consensus size: 15
31684 TTCCTAAGTT
*
31694 ACAACACTCGTCACA
1 ACAACACTCGGCACA
31709 ACAACACTCGGCACA
1 ACAACACTCGGCACA
31724 ACAACACTCGGCACA
1 ACAACACTCGGCACA
*
31739 ACAACACTCGTCACA
1 ACAACACTCGGCACA
31754 ACA
1 ACA
31757 GCGCAAAACA
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
15 46 1.00
ACGTcount: A:0.41, C:0.40, G:0.10, T:0.10
Consensus pattern (15 bp):
ACAACACTCGGCACA
Left flanking sequence: Indices 31194 -- 31693
CAAGTTGTCAAATTTATCCATTTGAGAAGAATTAAGAACGAGTGTGACACAACGACAGACACAAC
GACACATCGCCATATTATTCCTCGCACTTTTGTGAAATTGAGCCTATGTGCGGATAACTACGACC
ATATGTTGCGAAAGACTTTTGAAATGGATGCCAAATACATATTCAAACAGTTGACTTTCGTTTTT
TATTTCATAAGGACTCGTCTGGAAGCGCCTTGTCTAGTTCTCAACAGAGCCAAAGTTGGTGGTCG
CTTAAATTGTACCGGCAAGCTAAAAAGGTGACACAATGACGTAAATTCCCATGTTTTTCACCTGT
TGGTTACTAACCATGTGTTTGGTTATCACCTGCTGTCTATCAAATTTAAAAGCAGTCGGCGGTTA
AGGAGCAAATCACTCCTCACATAACCACGTACCTGCCTTTTAATGTAGATAAACCTTATTATTTA
TCTCACTTAAACTAATTGATTTGACCATTGGTTTATTCCTAAGTT
Right flanking sequence: Indices 31757 -- 32256
GCGCAAAACACACAGTACCGTGAGTTAGACGATCTAACGAGCTACTGATATTAGGACTATAAGTG
ATTGTGAGGCAAACCATAAACACTCTCAACCATGGCCTGATACGCGAATACCCGAAGACCTCCTC
CACCAACTAATGACCTGGTAACCACTGACCTGGATACTACTCTTCAACAAAAGGTATAGAAGAAC
AGGTCGCGACTAATCTTCCCGCAAGTACCCAGGCCACTCCGCATGGTTAGTGTAACCATTACACT
TTCTATGTTTCTCACCATGTGTTTGCTAGTTTACGTAAATGCACAAGATTTGGATGGAAAACACG
AGGAAAACAAAAGCCAGACCAAAACGGTTGGTGGGTGAAATACCATCATTGGTAGCGAAAAGAGT
AAGAAGCATACAGCGATTCGTCGCAAGTGAGTTTGACATGACCTTGTAGGAGAAGATAGTCAATC
TGACTATTCGAGTAAAATACCACATTAAACACACACTGAGGTTTT
Found at i:33507 original size:124 final size:124
Alignment explanation
Indices: 33284--33516 Score: 421
Period size: 124 Copynumber: 1.9 Consensus size: 124
33274 TCGTTATAAT
*
33284 TCATGATAGATGCAATGGGTTTTTCTCCGATCAACGATTCCCCATATAAGACGCATGCCGTTAAT
1 TCATGACAGATGCAATGGGTTTTTCTCCGATCAACGATTCCCCATATAAGACGCATGCCGTTAAT
* *
33349 TTTCTACGTATTTAGTTAATTTTCAGGAATAGTGAAAAAAAAAACCCATGACCTAGATG
66 TTTCTAAGTATTTAGTTAATTTTCAGGAAAAGTGAAAAAAAAAACCCATGACCTAGATG
* *
33408 TCATGACAGATGCAATGGGTTTTTCTCCGATCAACGGTTCCCCATATACGACGCATGCCGTTAAT
1 TCATGACAGATGCAATGGGTTTTTCTCCGATCAACGATTCCCCATATAAGACGCATGCCGTTAAT
33473 TTTCTAAGTATTTAGTTAATTTTCAGGAAAAGTGAAAAAAAAAA
66 TTTCTAAGTATTTAGTTAATTTTCAGGAAAAGTGAAAAAAAAAA
33517 AACTTAAAAA
Statistics
Matches: 104, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
124 104 1.00
ACGTcount: A:0.33, C:0.18, G:0.17, T:0.31
Consensus pattern (124 bp):
TCATGACAGATGCAATGGGTTTTTCTCCGATCAACGATTCCCCATATAAGACGCATGCCGTTAAT
TTTCTAAGTATTTAGTTAATTTTCAGGAAAAGTGAAAAAAAAAACCCATGACCTAGATG
Left flanking sequence: Indices 32784 -- 33283
GTATTTAATCAATTTGAAGGAAAAGTGAACAAAATCGTGAAAAAAAAGCTAATGTTGTATTATTA
ATGTCTGAACTCGGTCCGTAGAAACTAGAACAGTAAGACGCTAAAATCAACCTGACGCAGGGAGG
TTGTGGTAATAAATTGGGAACTTGTTTGTGAAAGCCGAGGAAATCAAGAATCCAATGTCTTCTTG
ATATTCCTAGGCTCTGAAGTTAGAGAATTACCGATGATGGAATAGCATGAAATCCGATTTCCGTT
GCAGGTGAGAACACTGAGTTTAAATACTACGCCGGGCGTCGGAAACGCCCGTTCCTACAGCACGT
GGGAGGGTGCCGCACCGCAGCCCAGTCCAGCACGTGAGTCTTATTGTCGGAGCCGTACGGGAACG
TGGTCGTCTCAAACTCTAATCTCAAGTCCTGAACCGGAGCGGAATCGGCGTCGCCCACGCGTGTC
CTCAGTGCGCCTAACCTAATAGTACGGGTCTAGAGTCGTTATAAT
Right flanking sequence: Indices 33517 -- 34016
AACTTAAAAAAGTTGCCTGGTTAGCTCAATCGGTAGAGCGTGAGACTCTTAATCTCAAGGCTGCG
GGTTCGAGCCCCGCATCGGGCTTTTTTTTGCGTTACTAACCATTTTATTTGGATGTAAAAGTACT
TCTAGATGCAGTTGATATAATCATAGCCATATCCTTACGAGTCGATTGAAGCAACGCTCACATTA
TTTGCAGTAGATGCCACTTTCTCCTCGTTTGGTGCGTCAAATCCACATTTCGCGTTCACAGCTAT
CCACAAATAATCCTCAGAAGATGAGCAGTCCGGAATGGCGAGATTGCTCTGGTTCGGAAGGACAC
GGTCTAGGTTGTACTGGGCAAGAGATCACACTCGGTACTTCTAAAGGCAACGAAGAAGAGGCCCA
GGTTCACTCGTCAGAGCTAAAATATGGTCATGGAACCTACATTGATGAAGGCAGTATTTGCTCAG
CCAAAGGACCGCAGGTGTTACAGAACCCCTCGTCGCCTGTTATTG
Found at i:95893 original size:12 final size:12
Alignment explanation
Indices: 95876--95901 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
95866 TAGGACGTTC
95876 TTTTTTTCACTT
1 TTTTTTTCACTT
95888 TTTTTTTCACTT
1 TTTTTTTCACTT
95900 TT
1 TT
95902 CCTGAAAATT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.08, C:0.15, G:0.00, T:0.77
Consensus pattern (12 bp):
TTTTTTTCACTT
Left flanking sequence: Indices 95376 -- 95875
ACTCTCTGGTAAAGTGTGTGTTGCAATCTAAAAGAAAATTGAAAAATAAGCCCGATGCGGGGCTC
GAACCCGCAGCCTTGAGATTAAGAGTCTCACGCTCTACCGATTGAGCTAACCAGGCCAACTTTGT
TCCTTTTTTTTCTTTTTTTTAACTTTACCTTTTTTTACTTTTCCTGTAGATCACATTATGCTTAG
CTAAGAACAGGCATGCGTCGTGTAGGGGGAACGTTTGACCGGAGAAAACCCCATTGTGTCTGGAT
GTCCACATGGGACCGATTTTAGAATGACTCTGGTAGGACTCGAACTCGAAAAGGCCCACGAGCAG
CTCGTCGTCAAATGCCTCCTACTATTTCGTTACCTATGGTGGGCCTTCTCCCACCAACCGCTCTA
GTCTGACTGATGTTTTTCTCGTGTTTTACAGTCAGATCTTACGTATCTAAGTACGTAGCTAGCAA
ATTATATGGAAAAAAAAAAAAGAAGTTCGATTTGGTAGGACGTTC
Right flanking sequence: Indices 95902 -- 96401
CCTGAAAATTAACTAAATACTTAAAAAATTAACGGCTTGCGTCTTATATGGGGAACCGTAGATCA
GAGAAAAACCCATTGCATCTTTTTTTGAAAAAGTTTTCCTGGAAACTATATAGAAACCTAGAATA
TTAACATTTTTCCTCGAAAATATCTAACCTAAATAATGGGTGCCTCTTACTCTTTCGTTACCTAT
GGCGGGCCTTCTCCCACCAACCGCTCTGGTCTGGCTGATGTTTTCCTCGTGTTTTATAGTCAGAT
CTTACGTATCTACGTACGTAGTTAACAAATTATATGGAAAAAAAAATACGCCAACTAGCAAATTA
CATGGCAAAAAAAAAAAATCGGCCATTAGAAAGAGGGGATTAAGAGCAAATTGGAATACATCAAG
ACGGGCAGAGGCATGGCATGATCAGATGATCAGAGACCAAAAAACAAAAAAAAATCTCAAAATAT
TCTCAAAAAAACCAAATCAAACAATCCAACCTTGGGCACACTCTC
Found at i:141114 original size:21 final size:22
Alignment explanation
Indices: 141069--141140 Score: 76
Period size: 22 Copynumber: 3.3 Consensus size: 22
141059 GGCACAAGAA
* *
141069 GATGAGACCATGGGCAC-GACTC
1 GATGAGACCACGGGCACAG-CAC
*
141091 GAT-AGACCCCGGGCACAGCAC
1 GATGAGACCACGGGCACAGCAC
* *
141112 GATGAGGCCACGGGCACAGCGC
1 GATGAGACCACGGGCACAGCAC
141134 GATGAGA
1 GATGAGA
141141 TCGCCCCAGA
Statistics
Matches: 41, Mismatches: 7, Indels: 4
0.79 0.13 0.08
Matches are distributed among these distances:
21 16 0.39
22 25 0.61
ACGTcount: A:0.28, C:0.29, G:0.35, T:0.08
Consensus pattern (22 bp):
GATGAGACCACGGGCACAGCAC
Left flanking sequence: Indices 140569 -- 141068
TTGGTTTTCTGACCGATACGTGCCGTAGGGGCTGAGTAACACAGTATAACCCCGGTGTACTAGGC
TGTACGCGGGCGATTCGAGGCTCAAAGACCCGTTGCAGACGCGGACAACCTGTCAAGGTGGGGTG
GAGGGTGGTGTAGAACCCCTTGTATGAACTCATCACATTTGATAGATCGAAAATCAGTTGCAAGG
TCAACTATCAGTTAACAGCTTGTACGGACACGGCTAACACTACATCAATGCGAAGAGGAGTACCA
CGGGGTGCTCAAAACCGATCTTTGTTTACGTTCATGTAAGGCCGGCCATTTATCAAACATTACCA
TGACGGGTTGCAAGAAAAAGGCGTATCACAAGCGCCCACCGGTCACCCTAGTAGAATACGCTGGT
AACCACAGCCATGACGTGGGCGTTGCGCCTTGGTGACGACGGCCAAGACTTGGGGTCCAACCAAG
GTGGTTGCATTGCTGCATAGTTAGCACCCGGAAAAGGCACAAGAA
Right flanking sequence: Indices 141141 -- 141640
TCGCCCCAGAGCAGCATTTACGCCTGTTTTGCCGCGTCCCCTCCACGTGAGACACTTCTACGCTG
TCGCAAGCTAACCTCCTCTCCTACTCACCCCCATCGCCCTGTCAACGACTCGTGTGCCTAGGAAT
TTTTCCTCTTTGAGATGCATACACACGCGTACGAGACCCTGGGTCGCACATCAAGCACGGCCAAC
GGGTGAAACAGGGCACCAGGCAGCGGCCCACGGCGACGCCGCCGCACCGCAACACCCGTAGACAC
ACCCCACCGAACCACCACCCGCAAAGAACCCCCGTCGCCGCGGTGGTTGCTGTTGTTTGCTGGAG
GCATCCGTAAAAAATATCCCCCTGCGACACGTCTGACAACGACCTCACAAAGACACCCCGCCGTT
TTCGGTGGCCACCTCCGCCAGCAAAGCAGCGCCAACCCCACCACCGCCGCCACCGCCGCCGAGGT
CATCCCCACCCTCCGCTCCAGGGTCGTTGCCACTTGCCGCCGGCC
Found at i:143160 original size:21 final size:21
Alignment explanation
Indices: 143134--143189 Score: 103
Period size: 21 Copynumber: 2.7 Consensus size: 21
143124 TGGACGCCGT
143134 CAAGCTCGAGCCCGGCACCAC
1 CAAGCTCGAGCCCGGCACCAC
*
143155 CAAGCTCGAGCCCGGCACCAT
1 CAAGCTCGAGCCCGGCACCAC
143176 CAAGCTCGAGCCCG
1 CAAGCTCGAGCCCG
143190 CTGCCGGGCT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 34 1.00
ACGTcount: A:0.23, C:0.45, G:0.25, T:0.07
Consensus pattern (21 bp):
CAAGCTCGAGCCCGGCACCAC
Left flanking sequence: Indices 142634 -- 143133
TCTGCCAGCTCGTTGCCCGACCCGTTGGCGGCGCTGGAGTTCCACTACCGCCTGCTGGGCCTGTC
GCAGCTGCTGTTGCAGCTGTTGCGCGACGACAACCGCACGTTGCCGCTGGCGACGGCGCCGTCGG
CGCTGGCCGGCGCCACCATTCCCGACGGCGGCCTCCGCCGGTTGAGCGCGCCGGTGTTGCAGGCG
TTGGTGCCCGAGACCCACTCCATCGCCCACTTGCTGCACCTGCCGACGTTTGCCCGCGACCCCAG
CTTTCTGGAGGTGGTGGACACCATGCAGAGCTGCTCCACCGACGACGACGACCACACGCTGTTTG
ACCGCAGCTACATGAGCACGCTGCAGTCGATCATGAACATTTTGAACTCGGCGTCGAACCACAGC
TTGAGCCGGCACGTGGCCGCGGCCCCGCGCGACGAGGTGAAGCTTGAGGACAACATCGCCGTCAA
GCTCGAGGACGACGTCAAGCTGAACGACGCCGGGCTGGACGCCGT
Right flanking sequence: Indices 143190 -- 143689
CTGCCGGGCTTGCCGTCAACAGCGAGCGCCTCCCGCGCGACGCCAGCGCCAAGCTGGAGCTCTCG
ATGCACTCGGACGCCGAGTTCGCCCAGGTGCTGGACGTGGGCCGCGGACACCAGCCGCGGTTGGT
GGAGACGCCGCGCGTGGACAACACCCTGGCCGAGCTGATCCGGTTGCACATGGACTCTGCGTGGA
AGCTCGAGGACTCGCACGACGGCGACTTTGAAGACAACCGCGACGACACCAACGACGTGACCGCG
ATGTCGCGGGCCCCCACCGCGCGCCGTCCGCGCGAGCGCCGCCACCTGTCGTCGCTGGAGCTGTT
TGAGGACGCGCTGGAGGTGTTGGACGACACCCCACCGCGGTCGTTGGACCCGGCACTGGCGCTTG
CGTCGCCGGTGCGGGCCGAGTTTGCCAGCCCGGCCCGCGAGCAGTCGCCCGAGGCACGCCAGCGT
GACGTCACATACGGCACCGAGGTGTCGTCGGCCGACGAGGCGCGC
Found at i:144779 original size:3 final size:3
Alignment explanation
Indices: 144771--144808 Score: 58
Period size: 3 Copynumber: 12.7 Consensus size: 3
144761 GCCCTGGCAA
* *
144771 ACG ACG ACG ACG ACG ACA ACG ACG ACG ACG TCG ACG AC
1 ACG ACG ACG ACG ACG ACG ACG ACG ACG ACG ACG ACG AC
144809 CACGTGGCGC
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.34, C:0.34, G:0.29, T:0.03
Consensus pattern (3 bp):
ACG
Left flanking sequence: Indices 144271 -- 144770
CCACCTCAGCGGCGCCTCGGTGCCCAGCCGGCCCGTCAGCTACCTGCGGCCGCTGGCGGCGCTCC
TGCTGACGCCGCTGTACCTGTTGGAGCCGCCGCTGACCGCGGACAACCCGGCGTCGTTCGCGTAC
CGCCCGCCGGCGACGGCGCCGCGGCGGCTGCGGTTCCGGGTGCCCACGTTCGAGATCGAGCGCAC
GCTGCTGGTGTTGTCGCCCAAGAACATGTACAACCGCGACATCTTCGAGACCCGCCACCTGCTGG
CAGCGCTGCTGATGGCGCCCACCATCACCGGACACGGGCTCAAGACGCTCCCGCTGATGGACGGC
GACGACGTGAAACGGATCTTGCTGGCGAAGCGCGCGCTCACCCAGGACGAGTACACCCACGTCAA
GTTGCGCGGGCCGCTGAAGATGCTGACGGCAGCGGTGCTGCGCCCGCACTTGGCGTACGACTCGT
TGGAGAAACACGCGCTGATCTGCAACTCGCTGTACGCCCTGGCAA
Right flanking sequence: Indices 144809 -- 145308
CACGTGGCGCACGAGGTGATGCGCACGCCGCGCGCGTTGCGCTCGCTGGACCAGTTCTTCCACGA
CTACGACTTGTTCTCGGACGCCCCGGTCAACCTGTTGGACCCGCTGGCCAAGAACTTGCCCGAGC
CCGACGCCGACTTGGTGGCGCCGGCGGCGCCGATGTTCATGTACGCGGACTACCCGTTGGAGGGG
TCCACGGTGATGAACTACGAGCGCACCCGCCCGGGCCAGCCGCCCCAGCCGCATGCTGTGGTGTC
GCCTGAGCCCGCGGTGGTGTCGCCGGTGCCGTCGGACCCGATGCTCTACCGCGCCACCACCCCCG
AGCAGGCGCCGCCGGCACTGCCGCGCAAGCAGCGGTCGCCGCTCAAGGTGGTGGCCAAGAACGGC
GAGCGGATCCGCCGCAAGCCCGTGGGCCCGGTGGAGTTTGGCGCCGCGCGCGAGCCCGAGCAGGT
GGAGGCGCCGGTGGAGGTGGAACAGCCGGCGGAGCAGCCGGTGGA
Found at i:145317 original size:12 final size:12
Alignment explanation
Indices: 145279--145319 Score: 64
Period size: 12 Copynumber: 3.4 Consensus size: 12
145269 CGCCGGTGGA
*
145279 GGTGGAACAGCC
1 GGTGGAGCAGCC
*
145291 GGCGGAGCAGCC
1 GGTGGAGCAGCC
145303 GGTGGAGCAGCC
1 GGTGGAGCAGCC
145315 GGTGG
1 GGTGG
145320 CGGCCGACGA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
12 26 1.00
ACGTcount: A:0.17, C:0.24, G:0.51, T:0.07
Consensus pattern (12 bp):
GGTGGAGCAGCC
Left flanking sequence: Indices 144779 -- 145278
GACGACGACAACGACGACGACGTCGACGACCACGTGGCGCACGAGGTGATGCGCACGCCGCGCGC
GTTGCGCTCGCTGGACCAGTTCTTCCACGACTACGACTTGTTCTCGGACGCCCCGGTCAACCTGT
TGGACCCGCTGGCCAAGAACTTGCCCGAGCCCGACGCCGACTTGGTGGCGCCGGCGGCGCCGATG
TTCATGTACGCGGACTACCCGTTGGAGGGGTCCACGGTGATGAACTACGAGCGCACCCGCCCGGG
CCAGCCGCCCCAGCCGCATGCTGTGGTGTCGCCTGAGCCCGCGGTGGTGTCGCCGGTGCCGTCGG
ACCCGATGCTCTACCGCGCCACCACCCCCGAGCAGGCGCCGCCGGCACTGCCGCGCAAGCAGCGG
TCGCCGCTCAAGGTGGTGGCCAAGAACGGCGAGCGGATCCGCCGCAAGCCCGTGGGCCCGGTGGA
GTTTGGCGCCGCGCGCGAGCCCGAGCAGGTGGAGGCGCCGGTGGA
Right flanking sequence: Indices 145320 -- 145819
CGGCCGACGACGCTGTCGACGACGCGGCCGCTCCGGAAGAGCCCGGGTTGCCCGACCGCGGGCGG
CTCTTCTTCCGGGTGGTGGGGCTCAAGAACGTCGAGCTCCGCGACCCCAAGTCCAAGGACGCCGA
GTTCACCATCACCTTGGACAACGGGGTGCACTGCATCAAGACCGCGCCCTACAAGCTCAACCAGG
CCAACGTGATGGTGGGCAAGGAGTTTGAGCTCACGGTGCTCGACCTGTTGCAGTTCATCTTGACG
CTCAAGATGGCGTACACCAAGCCGCGGGCGCGCCTCGTCGAGGTGAAGCAGAACAAGACCGTCAA
GGCCAAGGGCCGGTTGCTGCGGTTGTTGGGGTCCAAGGAGACCGTCACCACCACCAAGCTCGTCA
ACGAGCCCGTGGACGACCCCTGGGCCACCAAGTTTGCTGCCGACGGGCTGTTTGCCCGGTGCTAC
GTCGACTTGGACCAGTACGAGCACCTGGTGACCGGGTGCGCCGCC
Found at i:146929 original size:17 final size:17
Alignment explanation
Indices: 146907--146945 Score: 60
Period size: 17 Copynumber: 2.3 Consensus size: 17
146897 CCAGTGCCCG
*
146907 TAGGCAACCTTGGAACC
1 TAGGCAACCTTAGAACC
*
146924 TAGGCAACCTTAGAGCC
1 TAGGCAACCTTAGAACC
146941 TAGGC
1 TAGGC
146946 CACTGCTTAT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.28, C:0.28, G:0.26, T:0.18
Consensus pattern (17 bp):
TAGGCAACCTTAGAACC
Left flanking sequence: Indices 146407 -- 146906
CCAGACGTTTGTGCCCCCCGTGGGCGAGGGCATCACCTTTGGCGGCAAGCTGAAGGTGCACTCGG
CGTTCCCGCAAAAGTACAACGGACAGAAGGTGTTGTAGATATGTAACAATAATGATAATGAATCA
GTGATCAGTGAATTAGTGAATCAACTGGTGTGTGGGCGTTGTGTGTCTGAACGACGGCCCATAGA
CAGAGCCAGGGGTGAATAGCCAATTCAGGAGGTGGAGCCAACGCAGGGGTGTCATTAGTCAACTG
GAGTTGAAGCCAACGCAGGGGTGTAGTAGCCAACTGAAGAGTGTCAATGGCTGTTTTATGGATGA
GCGCCACGTCTAGTTGTCTCCTGGCCCCGTTCAGGAGCTATTAAATCACCGTGACCTGTCGTAGT
TAACCACCCCACTATTCGCCATGATTTCAACTGGATACTAAACCCATGCGTTTGGCTCTGTCCCC
AATTCGACTCTACCCCTATTGGAATCTGAAAACCACCAGTGCCCG
Right flanking sequence: Indices 146946 -- 147445
CACTGCTTATGTGCACTCCCCACTCACTGGCTACGCACATAGACAAACGCAGCGGAGGCACACCC
AATGGCGAAATCAGACGACGAGGACGCCTACCTCTACGGGCTGGACGAGGAGCAGCAGCCGCAGC
CTGCGGACGCTCCCGCGGACACCGCCGCGCCCGCCAAAGCCCCGGAACCCGCGGCCGCCGACGAC
GACGACGACGATGAGGAGGAGTACGACGAGTCCGATGACGACATCGACATCATCATCGGGGACGC
GCCGATCACCGCTGCCAGCGGCACCGAGACCGCCACTGAGGGCACCAAGGAGGAGTCTGCCGCGC
CCGCCAGCGGCTCCTCGGCCCAGAAACCGCAGGAGTCGGCGCTGGGCGTCGACGTCAACGCGGTG
GCAGAGTACGAGGGCAAGCCGTTGACCCAGGTGGACTTGGAGACGCTCAAGGAGAAGCCGTGGCG
CGCCCCGGGCGTGGACATCACCGACTACTTCAACTACGGGTTCGA
Found at i:147815 original size:21 final size:22
Alignment explanation
Indices: 147762--147837 Score: 111
Period size: 21 Copynumber: 3.4 Consensus size: 22
147752 CCAGTCCAAG
147762 TTGGTCCTT-GGTTTATTCCTCGAC
1 TTGGTCCTTAGG-TTATTCCT--AC
147786 TTGGTCCTTAGGTTATTCCTAC
1 TTGGTCCTTAGGTTATTCCTAC
147808 TT-GTCCTTAGGTTATTCCTAC
1 TTGGTCCTTAGGTTATTCCTAC
147829 TTGGTCCTT
1 TTGGTCCTT
147838 CTTAGGACTT
Statistics
Matches: 50, Mismatches: 0, Indels: 6
0.89 0.00 0.11
Matches are distributed among these distances:
21 21 0.42
22 10 0.20
24 17 0.34
25 2 0.04
ACGTcount: A:0.11, C:0.24, G:0.18, T:0.47
Consensus pattern (22 bp):
TTGGTCCTTAGGTTATTCCTAC
Left flanking sequence: Indices 147262 -- 147761
CTGCCGCGCCCGCCAGCGGCTCCTCGGCCCAGAAACCGCAGGAGTCGGCGCTGGGCGTCGACGTC
AACGCGGTGGCAGAGTACGAGGGCAAGCCGTTGACCCAGGTGGACTTGGAGACGCTCAAGGAGAA
GCCGTGGCGCGCCCCGGGCGTGGACATCACCGACTACTTCAACTACGGGTTCGACGAGTTCTCGT
GGACGTACTACTGCTCGAAACAGGACAAATTGCGGGGCGAGTTCAATCCCCAGAAGGTGTTTGCG
CAGTTGATGGGCACCAAGCCGGGCTCGGGAGGGCCGCCGATGCCCCCGATGATGGGAATGCCGAT
GATGGCCGGGATGCCGTCGTTCCCGGGCGGAGCGCCCCCTCCGATGCCGTTTGGCCAGTTTGGCC
AGGGAGGCAACTTCCAGATGCCGCCACCGCCGCCGCCGCCGCCTCTGGGAAGAAGATGAGGCGCT
AATGAAAACATGAATTGAAGATACTGCCAACCCAGCCAGTCCAAG
Right flanking sequence: Indices 147838 -- 148337
CTTAGGACTTGGCCTTCCCAGAATGGTCTTTCTTGATCTCCGTGATCGTGTAGCCTACATAAAGC
TCAATCCAATGTAATTCTATACACACCCGTTTCCTACTCCTCGTCCGACTCCTCGTCCGCCTCCT
GCAACCACTTGATGAACGGCTTGGCGGTCTTGCGCACCTTCTTGGACACGTCCTTGGGCACGTAC
TTTTTCAGCACCTTGGTGCCCCAGCTGATGATGACGTCCTCGGACACAATCTCCTTGTCGTAGCA
CTCCATCAACACCTTGTTGACGGCAGGCAAAAGGTCGGGCCGCTCGACGCCAAAGAACCGCTCGA
TGCCCCCCAAGAACGCCTTCTCGAACTCGGAGTCGTTGTTGATCAACTTGCGCAACAAACCCACG
TGGGTGTCCAACTGGGAGACAATGTTGTCGTCAAACAACGCCTGCCCGAGAATCTGCACGGTCTC
GGGGCGCTCGACGATCTCCAAGTCCATGATCTTCTTGTAAATGTC
Found at i:147955 original size:12 final size:12
Alignment explanation
Indices: 147938--147967 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
147928 CCCGTTTCCT
147938 ACTCCTCGTCCG
1 ACTCCTCGTCCG
147950 ACTCCTCGTCCG
1 ACTCCTCGTCCG
*
147962 CCTCCT
1 ACTCCT
147968 GCAACCACTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.07, C:0.53, G:0.13, T:0.27
Consensus pattern (12 bp):
ACTCCTCGTCCG
Left flanking sequence: Indices 147438 -- 147937
GGGTTCGACGAGTTCTCGTGGACGTACTACTGCTCGAAACAGGACAAATTGCGGGGCGAGTTCAA
TCCCCAGAAGGTGTTTGCGCAGTTGATGGGCACCAAGCCGGGCTCGGGAGGGCCGCCGATGCCCC
CGATGATGGGAATGCCGATGATGGCCGGGATGCCGTCGTTCCCGGGCGGAGCGCCCCCTCCGATG
CCGTTTGGCCAGTTTGGCCAGGGAGGCAACTTCCAGATGCCGCCACCGCCGCCGCCGCCGCCTCT
GGGAAGAAGATGAGGCGCTAATGAAAACATGAATTGAAGATACTGCCAACCCAGCCAGTCCAAGT
TGGTCCTTGGTTTATTCCTCGACTTGGTCCTTAGGTTATTCCTACTTGTCCTTAGGTTATTCCTA
CTTGGTCCTTCTTAGGACTTGGCCTTCCCAGAATGGTCTTTCTTGATCTCCGTGATCGTGTAGCC
TACATAAAGCTCAATCCAATGTAATTCTATACACACCCGTTTCCT
Right flanking sequence: Indices 147968 -- 148467
GCAACCACTTGATGAACGGCTTGGCGGTCTTGCGCACCTTCTTGGACACGTCCTTGGGCACGTAC
TTTTTCAGCACCTTGGTGCCCCAGCTGATGATGACGTCCTCGGACACAATCTCCTTGTCGTAGCA
CTCCATCAACACCTTGTTGACGGCAGGCAAAAGGTCGGGCCGCTCGACGCCAAAGAACCGCTCGA
TGCCCCCCAAGAACGCCTTCTCGAACTCGGAGTCGTTGTTGATCAACTTGCGCAACAAACCCACG
TGGGTGTCCAACTGGGAGACAATGTTGTCGTCAAACAACGCCTGCCCGAGAATCTGCACGGTCTC
GGGGCGCTCGACGATCTCCAAGTCCATGATCTTCTTGTAAATGTCCACGTCCAGAGGCAACTTCA
GCTTGTCCTTCTCCGCGTCCTCCAACAACCACTCACCAAAGTCGTTGAACACCTGCTGGTTGTCC
GAAAGCGTCAACCCGTCGAGCTCGCGCGCGCGTCTCGCCACCGCC
Found at i:151274 original size:7 final size:7
Alignment explanation
Indices: 151253--151294 Score: 61
Period size: 7 Copynumber: 6.1 Consensus size: 7
151243 GTACTCGGAG
151253 CACCAGC
1 CACCAGC
151260 CA-CAGC
1 CACCAGC
151266 CACCAGC
1 CACCAGC
151273 CACCAGC
1 CACCAGC
151280 CACTCAGC
1 CAC-CAGC
151288 CA-CAGC
1 CACCAGC
151294 C
1 C
151295 TACTACTAAC
Statistics
Matches: 33, Mismatches: 0, Indels: 5
0.87 0.00 0.13
Matches are distributed among these distances:
6 11 0.33
7 16 0.48
8 6 0.18
ACGTcount: A:0.29, C:0.55, G:0.14, T:0.02
Consensus pattern (7 bp):
CACCAGC
Left flanking sequence: Indices 150753 -- 151252
AAATTTACAGAAATAAAAAGAGTAGGCCAAGAAATATACGAACAACCCATTGCGCTTTGGTTTGT
AGCCTTCCTATTAATAAGGCTAAAACTGGGGGGATTCTCAACTACCTATCCTCATTTTTCGAGAT
ACAGGCGGATCCTAGGGAGATCGCGCATCCCGAGGCGCGTCATGCCGCGTCTACACTTCGAGTCT
AAATTAACCACGCTGCAGACAGAGCGCAGGGCAAGTAAGCATGTATACCAGTGTTTGATACAATT
AGCTATCCATACAAACTTCCCCGGGCTCAATTGCTCGTAAATTACCGATCGGCACCCATTGTTTG
GGTGCCGAAATCTAGTTGGCATGCCGATAATATCGTTCCCCGCTCTCCTGTCTACAGAGCGTTAC
CCGCCCCATAGCCCAGCCGCTGAGATATAAATATGGGTGCTCCCCCCAGATTTTGATTTTTTTTA
TCTACAACTTCCTCAGCCTCCACCATCCGGAGTAAGTACTCGGAG
Right flanking sequence: Indices 151295 -- 151794
TACTACTAACAGACACTAGCCACCCCGGTCACTGGACCTCTATGCTACTGTGATGGTAGCATTGA
GCCACCCGGGGTACCCCAGCCATGGCGCCTTGCTGGGTATGTAGAGTATATAGAGGGGTGGCCAC
CGTCGGCCATCCTGCCGGGTGGGCCGACGACCACTCCGGGGTAGAAGGGTGGCTGACCACGGCCA
CTCTAGTGTAGGGAATGGCTGACCACGGCCATTCTGAGGGGTGGGCCGACAGGTGGCCCCTCCGG
TGTAGGAGGGTAGCTACGGCCAGCCCTGAGTAGGCGGGTGGTCCGACCACGGCCACCGCGGAGTA
GGAGGCGGCTACGGCCAGCGCTCTGTAGGCGGGTGGGCCGGTACGGTCACCCCGATGTAGGAAAC
GGGGTGGGCCCCCTACGGCCCCTCCGTTTTGTGACCTAGGGAGAACCCCCTACGGTCACTAAGGT
TCATGGTCACCGGGGAGAGCCCCCTACGGTCAGTCCGTTTTTTCG
Found at i:152700 original size:21 final size:21
Alignment explanation
Indices: 152674--152717 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
152664 GCAGGCTTCT
*
152674 CGGGACCGGCGACCTT-AGGGG
1 CGGGACCGGC-AACTTCAGGGG
152695 CGGGACCGGCAACTTCAGGGG
1 CGGGACCGGCAACTTCAGGGG
152716 CG
1 CG
152718 ACCTCAGGGG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 4 0.19
21 17 0.81
ACGTcount: A:0.16, C:0.30, G:0.45, T:0.09
Consensus pattern (21 bp):
CGGGACCGGCAACTTCAGGGG
Left flanking sequence: Indices 152174 -- 152673
AGGGATCCAGCAGTGTTAGCATTGCGTGGGTTAACGGCAAGGAATGGTTGCAGATGTTCTACCCG
CGCATCACGAGTAGTGACGTCTTCCAGCCAACTGGCCTGCTCGTCTACAAAGTATTATATGGTCA
ATTTCCGGTAGAATATTTATGTATATACAGCCAGTGTATAGAGGAAAAAAGAATTAAGCCCAACA
ATCTTAACCCATTTACCAAACGAAAGGGTTCAACTTTGGACAAAAAATACCATACCAAGTCAATC
TTGGAAAACGAAACGGAGAAATCAGAAGTGTAACCTTCAAAGATTACATGAAGAGGATTGGGGGA
GGGTGGTCTTACAAGAGCAAACCGACAACCACAATGGCGGCGGCAGTCAACTTGGAAACACCCAT
AATCGAGGCAGAGCCCTCGTAGATAGCAGAAATTTCAGGAGAAGGTTTCTCGACGGCAGCAACTT
CAGGCGCCGGCTTCTCGGGGCCAGCAACCTGGGGAGCAGGCTTCT
Right flanking sequence: Indices 152718 -- 153217
ACCTCAGGGGCGGGCTTAACGGGGCCGGCAACCTCAGGAGCGGGACCAGCGGTCTCGGGGGCAAC
CTCGGGGGCAGGGCCAGCCACCTCAGGGGCAGGCTTCTCTGGGCCAGCAACTTCGGGGGCGGGGT
GCTCGGGGCCAGCAACCACGGGGGCAGCGGTGGGGTGGGTCTCAACACCAGCAAGAGTCTTGGTG
ACGACGGTGGTGTGGTCAGCCTCAGGAACAGGGACGTGAGCGGTTTCGACAACCTCACAGAGCTC
ACACTCGGGAGTAGGCAAAAGAGTGACGGTGGTGGTAACCTTGGGGGCGTGCTCGTCGGTGACAG
TCTGAGGGCCGCAGACGTTGGTGTCGTCACAGATCTCGATGGGCTTGGTAACAGTTACGGTGGGC
TCAGGAGCCTCACACTGGTCACCATGGCAAATCACGTAGACAGTCTTTTCAGCAGCCTTGGTGGG
CTCAGGACGGACACACTTGTCAGCCCCGCAGATAACAGTGACGGT
Found at i:152842 original size:30 final size:30
Alignment explanation
Indices: 152793--152874 Score: 92
Period size: 30 Copynumber: 2.7 Consensus size: 30
152783 CTCGGGGGCA
* * * *
152793 GGGCCAGCCACCTCAGGGGCAGGCTTCTCT
1 GGGCCAGCAACCTCGGGGGCAGGCTGCTCG
* * *
152823 GGGCCAGCAACTTCGGGGGCGGGGTGCTCG
1 GGGCCAGCAACCTCGGGGGCAGGCTGCTCG
*
152853 GGGCCAGCAACCACGGGGGCAG
1 GGGCCAGCAACCTCGGGGGCAG
152875 CGGTGGGGTG
Statistics
Matches: 42, Mismatches: 10, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
30 42 1.00
ACGTcount: A:0.15, C:0.32, G:0.43, T:0.11
Consensus pattern (30 bp):
GGGCCAGCAACCTCGGGGGCAGGCTGCTCG
Left flanking sequence: Indices 152293 -- 152792
TTATATGGTCAATTTCCGGTAGAATATTTATGTATATACAGCCAGTGTATAGAGGAAAAAAGAAT
TAAGCCCAACAATCTTAACCCATTTACCAAACGAAAGGGTTCAACTTTGGACAAAAAATACCATA
CCAAGTCAATCTTGGAAAACGAAACGGAGAAATCAGAAGTGTAACCTTCAAAGATTACATGAAGA
GGATTGGGGGAGGGTGGTCTTACAAGAGCAAACCGACAACCACAATGGCGGCGGCAGTCAACTTG
GAAACACCCATAATCGAGGCAGAGCCCTCGTAGATAGCAGAAATTTCAGGAGAAGGTTTCTCGAC
GGCAGCAACTTCAGGCGCCGGCTTCTCGGGGCCAGCAACCTGGGGAGCAGGCTTCTCGGGACCGG
CGACCTTAGGGGCGGGACCGGCAACTTCAGGGGCGACCTCAGGGGCGGGCTTAACGGGGCCGGCA
ACCTCAGGAGCGGGACCAGCGGTCTCGGGGGCAACCTCGGGGGCA
Right flanking sequence: Indices 152875 -- 153374
CGGTGGGGTGGGTCTCAACACCAGCAAGAGTCTTGGTGACGACGGTGGTGTGGTCAGCCTCAGGA
ACAGGGACGTGAGCGGTTTCGACAACCTCACAGAGCTCACACTCGGGAGTAGGCAAAAGAGTGAC
GGTGGTGGTAACCTTGGGGGCGTGCTCGTCGGTGACAGTCTGAGGGCCGCAGACGTTGGTGTCGT
CACAGATCTCGATGGGCTTGGTAACAGTTACGGTGGGCTCAGGAGCCTCACACTGGTCACCATGG
CAAATCACGTAGACAGTCTTTTCAGCAGCCTTGGTGGGCTCAGGACGGACACACTTGTCAGCCCC
GCAGATAACAGTGACGGTCTCCACGGGTACCTCAGGAACCACGATCTCGGACTCGGCAAGAGGAG
TGGGGCAGGGCTTCAACTCGGTCGTCTCCTTGGTGTGGCAGGCAGCAGCCTCGCAGGTGACGGTC
TGGGTAACGTGGTGGGTCAACTCGACGTAGTGGGTGATCACCTTA
Found at i:153587 original size:30 final size:30
Alignment explanation
Indices: 153546--153859 Score: 565
Period size: 30 Copynumber: 10.5 Consensus size: 30
153536 CGAAGCCTCG
*
153546 GCAGAGGTCTCCTCAGCGGGGGCAGACTCA
1 GCAGGGGTCTCCTCAGCGGGGGCAGACTCA
* *
153576 GCAGGGGTCTCCTCAGCAGAGGCAGACTCA
1 GCAGGGGTCTCCTCAGCGGGGGCAGACTCA
153606 GCAGGGGTCTCCTCAGCGGGGGCAGACTCA
1 GCAGGGGTCTCCTCAGCGGGGGCAGACTCA
153636 GCAGGGGTCTCCTCAGCGGGGGCAGACTCA
1 GCAGGGGTCTCCTCAGCGGGGGCAGACTCA
*
153666 GCAGGGGTCTCCTCAGCAGGGGCAGACTCA
1 GCAGGGGTCTCCTCAGCGGGGGCAGACTCA
153696 GCAGGGGTCTCCTCAGCGGGGGCAGACTCA
1 GCAGGGGTCTCCTCAGCGGGGGCAGACTCA
153726 GCAGGGGTCTCCTCAGCGGGGGCAGACTCA
1 GCAGGGGTCTCCTCAGCGGGGGCAGACTCA
153756 GCAGGGGTCTCCTCAGCGGGGGCAGACTCA
1 GCAGGGGTCTCCTCAGCGGGGGCAGACTCA
153786 GCAGGGGTCTCCTCAGCGGGGGCAGACTCA
1 GCAGGGGTCTCCTCAGCGGGGGCAGACTCA
* * *
153816 GCAGGGGTCTCCTCAGCAGGGGCAGATTCG
1 GCAGGGGTCTCCTCAGCGGGGGCAGACTCA
153846 GCAGGGGTCTCCTC
1 GCAGGGGTCTCCTC
153860 GGGGGAGGGG
Statistics
Matches: 274, Mismatches: 10, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
30 274 1.00
ACGTcount: A:0.18, C:0.30, G:0.39, T:0.14
Consensus pattern (30 bp):
GCAGGGGTCTCCTCAGCGGGGGCAGACTCA
Left flanking sequence: Indices 153046 -- 153545
GAGGGCCGCAGACGTTGGTGTCGTCACAGATCTCGATGGGCTTGGTAACAGTTACGGTGGGCTCA
GGAGCCTCACACTGGTCACCATGGCAAATCACGTAGACAGTCTTTTCAGCAGCCTTGGTGGGCTC
AGGACGGACACACTTGTCAGCCCCGCAGATAACAGTGACGGTCTCCACGGGTACCTCAGGAACCA
CGATCTCGGACTCGGCAAGAGGAGTGGGGCAGGGCTTCAACTCGGTCGTCTCCTTGGTGTGGCAG
GCAGCAGCCTCGCAGGTGACGGTCTGGGTAACGTGGTGGGTCAACTCGACGTAGTGGGTGATCAC
CTTACCCTCAGAGGAAGTCTTGGAGACGTGACAAGGCACACCAGTGGTGATGGTCTTAGTCTTGC
AGGCCTTCTCACACTCAACGGTAACGATCTTCTTAGTGATCTGAGTGACGGTCTCAGTTTCGATC
TCAACGGGGGCCAGAGGAGAAGCAGTCACAGAAGGCGAAGCCTCG
Right flanking sequence: Indices 153860 -- 154359
GGGGGAGGGGGAAGCCTCGGCGTTAATGACGGGAAGCTTGCTGGTACCAATGGGCTGGACAGTAG
ATCTAGTCACCGTAACAGTAGGAGTCTCCACAGTAGTGATGGTAATGGTAGAGCATCCCGATTCC
GAAGCGGAAGTGATGGGAGAGCTGGGAGAAGGGGCAACAGTGGGAGAAGGAGATTCGGAAGAAGA
TGTAGGAACAATGCTGGTCGACGAAGATTCTTCAGAAGGCGAAGGCAGGGCCTCGACAGAAGAAG
AAGTCAAAGAAGACGAAGAAGACGAAGAAGACGACTCAACAGTCAGAGACTCAACAGTCAGAGAA
GAGGACAGGGTGCTAGCAGGGACCTGAACCAACACAGTCTCAGTAATTCCAGTAGTCTGGGGGTG
AGGCAAAGTGGTCACATCGGTGGTGGTACCGGTCCAGGTGGTGGTGATCACCTTCTGGGCGTTAC
CATTACCATAAGGGTCAGAGTCCTTGTACGGATTCCAGCCAACAA
Found at i:154138 original size:9 final size:9
Alignment explanation
Indices: 154116--154153 Score: 58
Period size: 9 Copynumber: 4.2 Consensus size: 9
154106 CTCGACAGAA
*
154116 GAAGAAGTC
1 GAAGAAGAC
*
154125 AAAGAAGAC
1 GAAGAAGAC
154134 GAAGAAGAC
1 GAAGAAGAC
154143 GAAGAAGAC
1 GAAGAAGAC
154152 GA
1 GA
154154 CTCAACAGTC
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.55, C:0.11, G:0.32, T:0.03
Consensus pattern (9 bp):
GAAGAAGAC
Left flanking sequence: Indices 153616 -- 154115
CCTCAGCGGGGGCAGACTCAGCAGGGGTCTCCTCAGCGGGGGCAGACTCAGCAGGGGTCTCCTCA
GCAGGGGCAGACTCAGCAGGGGTCTCCTCAGCGGGGGCAGACTCAGCAGGGGTCTCCTCAGCGGG
GGCAGACTCAGCAGGGGTCTCCTCAGCGGGGGCAGACTCAGCAGGGGTCTCCTCAGCGGGGGCAG
ACTCAGCAGGGGTCTCCTCAGCAGGGGCAGATTCGGCAGGGGTCTCCTCGGGGGAGGGGGAAGCC
TCGGCGTTAATGACGGGAAGCTTGCTGGTACCAATGGGCTGGACAGTAGATCTAGTCACCGTAAC
AGTAGGAGTCTCCACAGTAGTGATGGTAATGGTAGAGCATCCCGATTCCGAAGCGGAAGTGATGG
GAGAGCTGGGAGAAGGGGCAACAGTGGGAGAAGGAGATTCGGAAGAAGATGTAGGAACAATGCTG
GTCGACGAAGATTCTTCAGAAGGCGAAGGCAGGGCCTCGACAGAA
Right flanking sequence: Indices 154154 -- 154653
CTCAACAGTCAGAGACTCAACAGTCAGAGAAGAGGACAGGGTGCTAGCAGGGACCTGAACCAACA
CAGTCTCAGTAATTCCAGTAGTCTGGGGGTGAGGCAAAGTGGTCACATCGGTGGTGGTACCGGTC
CAGGTGGTGGTGATCACCTTCTGGGCGTTACCATTACCATAAGGGTCAGAGTCCTTGTACGGATT
CCAGCCAACAAACGTTCTTTGACCCTGGGTGCCATATCTACCAGCGCACTTGGCTTTGTTAATGT
AGATAATATGGTCAGCGTTCAGCGAAGTGTAACCCGTGAGCACAGCACGAGCACCCTTGGGCAAG
TCGCCATACTTCCAGGTAATCAATTTGGGAGTACAGGTGAAGCCCAGGGTAACGACGTCAGCAGT
GAGGGGAGCAAACCAAGGGGTCATGCTGGTGGCAAACCCAGCAACCACCTTAGAACAGTCGAAGG
ACGCCTTTTGGGTGTCAAGCTCCATGGACAAAATACCTTCGGTAC
Found at i:154172 original size:15 final size:15
Alignment explanation
Indices: 154152--154183 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
154142 CGAAGAAGAC
154152 GACTCAACAGTCAGA
1 GACTCAACAGTCAGA
154167 GACTCAACAGTCAGA
1 GACTCAACAGTCAGA
154182 GA
1 GA
154184 AGAGGACAGG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.41, C:0.25, G:0.22, T:0.12
Consensus pattern (15 bp):
GACTCAACAGTCAGA
Left flanking sequence: Indices 153652 -- 154151
CGGGGGCAGACTCAGCAGGGGTCTCCTCAGCAGGGGCAGACTCAGCAGGGGTCTCCTCAGCGGGG
GCAGACTCAGCAGGGGTCTCCTCAGCGGGGGCAGACTCAGCAGGGGTCTCCTCAGCGGGGGCAGA
CTCAGCAGGGGTCTCCTCAGCGGGGGCAGACTCAGCAGGGGTCTCCTCAGCAGGGGCAGATTCGG
CAGGGGTCTCCTCGGGGGAGGGGGAAGCCTCGGCGTTAATGACGGGAAGCTTGCTGGTACCAATG
GGCTGGACAGTAGATCTAGTCACCGTAACAGTAGGAGTCTCCACAGTAGTGATGGTAATGGTAGA
GCATCCCGATTCCGAAGCGGAAGTGATGGGAGAGCTGGGAGAAGGGGCAACAGTGGGAGAAGGAG
ATTCGGAAGAAGATGTAGGAACAATGCTGGTCGACGAAGATTCTTCAGAAGGCGAAGGCAGGGCC
TCGACAGAAGAAGAAGTCAAAGAAGACGAAGAAGACGAAGAAGAC
Right flanking sequence: Indices 154184 -- 154683
AGAGGACAGGGTGCTAGCAGGGACCTGAACCAACACAGTCTCAGTAATTCCAGTAGTCTGGGGGT
GAGGCAAAGTGGTCACATCGGTGGTGGTACCGGTCCAGGTGGTGGTGATCACCTTCTGGGCGTTA
CCATTACCATAAGGGTCAGAGTCCTTGTACGGATTCCAGCCAACAAACGTTCTTTGACCCTGGGT
GCCATATCTACCAGCGCACTTGGCTTTGTTAATGTAGATAATATGGTCAGCGTTCAGCGAAGTGT
AACCCGTGAGCACAGCACGAGCACCCTTGGGCAAGTCGCCATACTTCCAGGTAATCAATTTGGGA
GTACAGGTGAAGCCCAGGGTAACGACGTCAGCAGTGAGGGGAGCAAACCAAGGGGTCATGCTGGT
GGCAAACCCAGCAACCACCTTAGAACAGTCGAAGGACGCCTTTTGGGTGTCAAGCTCCATGGACA
AAATACCTTCGGTACCACCCTCGCCGTCACAGTCAAGACCAATCA
Found at i:179382 original size:18 final size:18
Alignment explanation
Indices: 179359--179432 Score: 114
Period size: 18 Copynumber: 4.1 Consensus size: 18
179349 TCCCAACGAC
179359 GCGGT-GCCATCCGAGCTG
1 GCGGTGGCC-TCCGAGCTG
179377 GCGGTGGCCTCCGAGCTG
1 GCGGTGGCCTCCGAGCTG
*
179395 GCGGTGGCCTCCGAACTG
1 GCGGTGGCCTCCGAGCTG
*
179413 GCGGTGGCCACCGAGCTG
1 GCGGTGGCCTCCGAGCTG
179431 GC
1 GC
179433 TGCCCCCGTG
Statistics
Matches: 52, Mismatches: 3, Indels: 2
0.91 0.05 0.04
Matches are distributed among these distances:
18 49 0.94
19 3 0.06
ACGTcount: A:0.09, C:0.34, G:0.42, T:0.15
Consensus pattern (18 bp):
GCGGTGGCCTCCGAGCTG
Left flanking sequence: Indices 178859 -- 179358
GCAGGTGCTCGGCTAAGGCGAGATCGCTGAGACTAGCGTCGGTAATTTCGGTGGCAGTTGCCCAA
TGGAGCAAGAGCGCAAGCCACACCCATCGTAGTGAGGTCATGGTCGCAGATGTGCTGGCTGCACC
CGCTCAAAACGGCTTGTGCAGATCTCGGTGCGCGCGCCATCAGTGCCAAATCCGGGATCGGAACC
AGCGACCCCGAGGGCCCTGGACACAAATGGCGCTTCGTATAAAATGATTAAGGTATGTCCGAATA
GCTAGTTCGCTAATGAAATCTGTGTTGTTTTTGGCTGCCCCTGCCGTGGCGTTGCCCACGCTTGT
CGCAACCCTGATCGATACCACCACCTGTGACTCGTGTGTGGTGGTGCCCACGCTGTTCCGCTACA
CCAACTCGTCGTCGGTGGTCACTCTGGCCTCGGTGCCAGAGGTACCGGTGAGCAGTGCTGAGGAA
AACGCTGGCCTTGTTGCCCCTACCGAGACCGAGCTTCCCAACGAC
Right flanking sequence: Indices 179433 -- 179932
TGCCCCCGTGCCCACGGAGCCCGTGTTCAACAACGCCACCCTGGGGGACATCACCGAATATGAAA
CCTTCCAGTCCACCGAGACCGTGTGCTCAGGGTCGGTGTGCGACGTCACTACCAACGAGTACTTG
CGGTCGACGGTGATTACCACCATCGACGGGATCTTGACTACCATCGTCACCGCGTTGCCCCAGAC
CACCACCGCGTCCACCCTGGAGCCTCCTGTGGCTGGGGGTGCCGCGCCTGCCGAGTCCGAGTTGA
CCACCTTGACTACCACCAAGGACAACCAGGTCACCGTGCTCACCACCTACGTGCCGCGTCCGTCG
GAAGAGGAAGTAATTTCCTACGTCACCGAGTACGACGACACCACCGAGCAAGTGGTGGTGACCAA
CGTTGAGGAGACGGTGGTCTACATCACCCAGTGCGACAACGGGGTGTGCTCGCAGGTGGCCTCGA
CCTCCAAGGTCACCAAGACCTCTACCGAGGAACACAAAGTTACCA
Found at i:197004 original size:9 final size:9
Alignment explanation
Indices: 196986--197020 Score: 52
Period size: 9 Copynumber: 3.9 Consensus size: 9
196976 TCGAGAACTG
196986 GCACGAGAC
1 GCACGAGAC
*
196995 GCAAGAGAC
1 GCACGAGAC
*
197004 GCGCGAGAC
1 GCACGAGAC
197013 GCACGAGA
1 GCACGAGA
197021 ACTTACACTT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
9 22 1.00
ACGTcount: A:0.34, C:0.29, G:0.37, T:0.00
Consensus pattern (9 bp):
GCACGAGAC
Left flanking sequence: Indices 196486 -- 196985
TATCTGACATCACCAGTTCCAAATGACTGAGGAACACACGTGATCACACTTGAAAACTACGCGAA
AACCCCAGTTCAGACTTACCTTTGCACAACATGACCGATCACAACCAGCGCGATAGCTATCGCGG
GCGCGGGAACAGTGGAAGCACTGGTTACCGTGAGTCTTCACAGGGACGCTATCGAGACCGTGATT
CAGGCTATCACGGACGTGAACGTGGCGGCCGCCGGGAATCCTACCAAGACCGGAACACGCACTCT
GGCCATACTGGAGGAAGCCACGATGGTTACTACGACCGGCCCGCGTACGAGCGTTCTGGAAGCAC
TCTGCGCTATAGTTCCCAGTCTCTGACCCATGACCGCCCTCCGCATCGACGCGAGCATCGAAAGG
ATGATCGCAGAGATAGCCGTGACAGACCTGACCATCACAGACGAGATAGTTACAGAGACAACCAC
AGGGATAGTCACGATCGCCGCGAGTCTCATGACCATCGAGAACTG
Right flanking sequence: Indices 197021 -- 197520
ACTTACACTTCATGAGCGCAACCCACTGGCTCTATCGCAAAAGCCAAGACCCACCGCACCTAAAT
CCAGCAACTCACCAACCGCTCACAATCCCTGGGTTTCACAATTTAGTATTAAGGACCCTAGGCTC
CAAAACAGTTTGGAAAGCTCACAAACCCAGATCCTCGAGCTTAATGCTCGGCTAACTGCCTTAAA
TGAATCCCGCGCAAAAGCCATGAACTCGCTCAACAACTACCAACGTTTGGCAACGAAGGAACAGC
TATCCATCCAACTCCAGAACGACAAGGTGGAAGAATTGGCGCTTATGTAAATATGAAGTATGACT
ATCGACATAATGGAATACTATGCGATTTACGTATGGAGGTGGTGATACACCCCAAGGCAGAGAAT
CAAACCGTTTCTTGGGGTTTCTCAGGGTTTCTAGGGGTGTGTCTTGCGCGCAGATTTATGCGGCG
CGCTAGATAACACTTTAATTCTACCATAGCCTCGATCGACATGTA
Found at i:221807 original size:12 final size:12
Alignment explanation
Indices: 221787--221818 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
221777 CAACGACTTT
221787 GCCCAGGCGCAG
1 GCCCAGGCGCAG
*
221799 GCGCAGGCGCAG
1 GCCCAGGCGCAG
221811 GCCCAGGC
1 GCCCAGGC
221819 CCAAGCTCAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.16, C:0.41, G:0.44, T:0.00
Consensus pattern (12 bp):
GCCCAGGCGCAG
Left flanking sequence: Indices 221287 -- 221786
TTGACCTGCTGATTATCACTGATGAGAAAAAGTTGCTCAACCTGAACCTGCGCCGCGAAAGAACC
AAGTTCGGGAATTATAAGGTGTGTCAACGATGTCGTGAAAACGATAAGATTCGTCGCACAAACCT
CGAGAAGATGGGTAACTGCAACAGATGTGCGAAGCAGCTTGACCATGGTGATGTCGGGAAACACA
AGGTGTGCAGCAACTGCCGCCTGCGAAAGAAGAAGCTTCTGCAACTGGGCCCGCTGGGCCGGGAG
TCGCTTCTGGGCCCGCTGGGCGGCCCCGGTATGCCTCACTTGGGCATGGCCGGCAAGCCTGTGCT
CGGTGGAATGCCTCAGCTGATGCACGTTTTGGACAACCTGATGCTTCTGAACATTCCTCACCATT
TACCCCAGCCTACAGAAAACTTGATTGCCGCCGCCCTGGTTGCTGCCGGGGCCGAGGTGATGGGC
CAGGGGCTGTATGTACTGGTACCTCTTACCCAGTACAACGACTTT
Right flanking sequence: Indices 221819 -- 222318
CCAAGCTCAACAACAGTACAGTCACAATCTGGCGTTGGCTGCGGCCCAGCAGCAGCAGTATCTGC
AGCAAATGCAGATGCAGCAACAGGGCATGCACCAACAGAGACCCCAGTGATAGAGTTTGTTTTTT
GTTTAAGTATCAATGTACTATATTTATGTTTATCTACCTGAAATGAGAGCCTACCAGAGACACGT
TGATGGCGCTGCCACGAAGCATGGTTTTGAACACAGTACACTATTATGACCAAGGAAGGAAGGTG
GTGTCTCAACTGCGGTCACCTCGCACCGACTAGTCAAAAGTACATCATCCCATGCTTCTTATCTA
CGTAACGAAGGTGTCTTGAATGCGTCATTAATGAAGGAGCACTCATGGCTCATGTGCAGATGTGA
TTGGCTTTAGAAGAGTATCTTCGAAGCTCACTGAACTCCGTAATCTTCCTATTCACCCCTTTCAA
CAGTTCAATATTCACAGGGTTTTGAGCGCGGACAATCAGGGGCAA
Found at i:226098 original size:9 final size:9
Alignment explanation
Indices: 226086--226117 Score: 64
Period size: 9 Copynumber: 3.6 Consensus size: 9
226076 TTGTTGTGTT
226086 TGCTGGTTC
1 TGCTGGTTC
226095 TGCTGGTTC
1 TGCTGGTTC
226104 TGCTGGTTC
1 TGCTGGTTC
226113 TGCTG
1 TGCTG
226118 TTGACGCATC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 23 1.00
ACGTcount: A:0.00, C:0.22, G:0.34, T:0.44
Consensus pattern (9 bp):
TGCTGGTTC
Left flanking sequence: Indices 225586 -- 226085
TGGGATCTCCAAACGAAGGCAGTGCCGAGGTGATAGCGGGTGATTGAGTCATCGGAGAACCCTGC
GGCATTGGCAGCGGTTGAACCATGGGCAGGGAGTGTTTCTGTGCCACATTACCACCTTGCGCACT
GGGAGTCCCAGCCTGAGCACCACCGGCCTGGTTTTGTTGCTGCTGCTGGGCACGCATCGCCATGA
TTTGGTTCTTCATATCGAGCCCGAGACGTTGGTACTTGTGTTGACGAACCTTGTACTCCACAAGT
TCACGCTCAATCTGTTGCAATTGCTCAGGGGTTGGATTAGCCAGCTTTCGTTGTTCGAGAATAAG
TATGCGCTGTTGAACATCCTGGATGTTGCGACGAATCATGTTGAACAGCTCCATCAGCACCGGAA
GCCGCGTTTGACCTTGTCCACCCTGGGCTGCCTGGGTTTGTCCCCGAACAGCCTGAGCCTGACCA
GGCTGAGATGGGGTCATGACCGAAGCGTCAGGGCTTTGTTGTGTT
Right flanking sequence: Indices 226118 -- 226617
TTGACGCATCCGCAACTGCTGCATCTGCTGTGGGGTCATTTGCATCCCTTGGCCACCCTGCATAC
CTCCCAGCGGTTGCTGGCGCATTTGCATCGATGGGGACTGACCAACAGCCTGTCTTTGCTGCTGT
TGCTGCTGCTGCTGCGGCTGTTGTTGCAGTTGTGGTTGGGCATACTGTTGCTGCAGTTGGCCCTG
GTTCTGGCCAGTCTGACCACCCTGCTGAGCCTGAGCGCGCTGCTGTTGTTGGTATTGCATCAAAA
TCTGACGAATTTTGGCAGCTTGTTGGCGGTGCTTCTGGCGCGCAGCTTCATCAGTCGCTTGTTGG
GCGCGTTGTTCTTCGACCCTCATCAGTTGAATCAATTTAGGAATATGCTGCGCTTGGATGTTAAT
CACTCGCCGGGGGGCTTGCCCTTCGGAGGCTTGACCGGCCCCACCTGCACCAAATTGCCCCCCTC
CATTCATGTTCATGTTACCCTGGTTGTTCATAGGGCCTCTTTGGG
Found at i:241430 original size:27 final size:27
Alignment explanation
Indices: 241400--241465 Score: 78
Period size: 27 Copynumber: 2.4 Consensus size: 27
241390 CACCACCTTG
*
241400 ACCCCAAGTCAGATTACCACCTTTGTT
1 ACCCCAAGACAGATTACCACCTTTGTT
* * *
241427 ACCCCAGGACAGGTTGCCACCTTTGTT
1 ACCCCAAGACAGATTACCACCTTTGTT
* *
241454 GCCCCATGACAG
1 ACCCCAAGACAG
241466 GTTGCCGCCT
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 33 1.00
ACGTcount: A:0.23, C:0.35, G:0.18, T:0.24
Consensus pattern (27 bp):
ACCCCAAGACAGATTACCACCTTTGTT
Left flanking sequence: Indices 240900 -- 241399
TTTTCTCGTATTCTACAGTCAGATCTTCCGTATCTAAGTACGTAGTTAGCAAATTATATGGAAAA
AAAAAAAATAACAATCGAATCGGCAACTATACACATATAATAGCCCTCTTCATATGTACATAAGT
CTCGCACTAAGTTAGTAAAACTTTCGTTTTCAATTGATTGATTCATTGGACCATTAAATAAGCTT
AGAAGGTAATCCCTGCAAACGTCTGGAGGATTGAAAACAGAGTAGATTTAAAGCAATCAATCCAT
TTGACCAGACTGCGTAAAGCGAAGTCATCGTAGAAAGCATTCAGACACGAACAGGATAGCACGAG
TCAGGTAACAGCACTGGGAAGGGACTTGTATGGTGATCTACACCGAATCTACTTTCATTTCCGTT
TATATATATTTGTTTGGATTATAAGAGTATAAATACATTTGCAGTCATGAACCCCACGTTGAATT
GTTACCGCGGTCCTTCTTACCCCAAGTCAGGCCACCACCACCTTG
Right flanking sequence: Indices 241466 -- 241965
GTTGCCGCCTTTATTGCCGGATCCCCACGTCAGTCCGCCTCCTTTGTCATTGTTGGCACCCCACG
TCAGTGTGCCACCTTGGTTAGCAGACCCCCAAGTCAGGGTGCCCCCTTGGTTGGAGGCACCCCAT
GTCAGGCTACCACCCTGGTTTCCAGAACCCCAGGTCAGATTGCCACCTGACGCACCCCATGCCAG
CTGGTTGCCACCAGATGCACCCCAAGTGGATTGGTTGCCCGACCCCCAAGCCAGTTTTTCGCCTC
CACCCCACTGTGAAACGTTGCCCAGGGAAAAGGCAGGGGTCCGACCACCACCCGGGTTACCTCCC
CAAGCAGTTCCGCCACCAGCAGCAGGAGTGGCACCTCCGTTCCAAGCCAGTCTGCCGCCCAGAGC
ATAGGCGCGCGAACCTCCTTGTTGTTGCGGCTCCGCGCTTTGGGCAGGTCCGCCAATGAAGCGAA
CGTATGGAATTGCCTGACCTCTAATGAGAACATTGAGCTTGTTCT
Found at i:241466 original size:27 final size:27
Alignment explanation
Indices: 241416--241483 Score: 100
Period size: 27 Copynumber: 2.5 Consensus size: 27
241406 AGTCAGATTA
*
241416 CCACCTTTGTTACCCCAGGACAGGTTG
1 CCACCTTTGTTGCCCCAGGACAGGTTG
*
241443 CCACCTTTGTTGCCCCATGACAGGTTG
1 CCACCTTTGTTGCCCCAGGACAGGTTG
* *
241470 CCGCCTTTATTGCC
1 CCACCTTTGTTGCC
241484 GGATCCCCAC
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 37 1.00
ACGTcount: A:0.15, C:0.35, G:0.21, T:0.29
Consensus pattern (27 bp):
CCACCTTTGTTGCCCCAGGACAGGTTG
Left flanking sequence: Indices 240916 -- 241415
AGTCAGATCTTCCGTATCTAAGTACGTAGTTAGCAAATTATATGGAAAAAAAAAAAATAACAATC
GAATCGGCAACTATACACATATAATAGCCCTCTTCATATGTACATAAGTCTCGCACTAAGTTAGT
AAAACTTTCGTTTTCAATTGATTGATTCATTGGACCATTAAATAAGCTTAGAAGGTAATCCCTGC
AAACGTCTGGAGGATTGAAAACAGAGTAGATTTAAAGCAATCAATCCATTTGACCAGACTGCGTA
AAGCGAAGTCATCGTAGAAAGCATTCAGACACGAACAGGATAGCACGAGTCAGGTAACAGCACTG
GGAAGGGACTTGTATGGTGATCTACACCGAATCTACTTTCATTTCCGTTTATATATATTTGTTTG
GATTATAAGAGTATAAATACATTTGCAGTCATGAACCCCACGTTGAATTGTTACCGCGGTCCTTC
TTACCCCAAGTCAGGCCACCACCACCTTGACCCCAAGTCAGATTA
Right flanking sequence: Indices 241484 -- 241983
GGATCCCCACGTCAGTCCGCCTCCTTTGTCATTGTTGGCACCCCACGTCAGTGTGCCACCTTGGT
TAGCAGACCCCCAAGTCAGGGTGCCCCCTTGGTTGGAGGCACCCCATGTCAGGCTACCACCCTGG
TTTCCAGAACCCCAGGTCAGATTGCCACCTGACGCACCCCATGCCAGCTGGTTGCCACCAGATGC
ACCCCAAGTGGATTGGTTGCCCGACCCCCAAGCCAGTTTTTCGCCTCCACCCCACTGTGAAACGT
TGCCCAGGGAAAAGGCAGGGGTCCGACCACCACCCGGGTTACCTCCCCAAGCAGTTCCGCCACCA
GCAGCAGGAGTGGCACCTCCGTTCCAAGCCAGTCTGCCGCCCAGAGCATAGGCGCGCGAACCTCC
TTGTTGTTGCGGCTCCGCGCTTTGGGCAGGTCCGCCAATGAAGCGAACGTATGGAATTGCCTGAC
CTCTAATGAGAACATTGAGCTTGTTCTTGTCCACTTTGATTCGTT
Found at i:241594 original size:33 final size:34
Alignment explanation
Indices: 241520--241615 Score: 97
Period size: 33 Copynumber: 2.9 Consensus size: 34
241510 TGTCATTGTT
* *
241520 GGCACCCCACGTCAGTGTGCCACCTTGGTTAGCA
1 GGCACCCCAAGTCAGGGTGCCACCTTGGTTAGCA
* * *
241554 GAC-CCCCAAGTCAGGGTGCCCCCTTGGTT-GGA
1 GGCACCCCAAGTCAGGGTGCCACCTTGGTTAGCA
* * * *
241586 GGCACCCCATGTCAGGCTACCACCCTGGTT
1 GGCACCCCAAGTCAGGGTGCCACCTTGGTT
241616 TCCAGAACCC
Statistics
Matches: 50, Mismatches: 11, Indels: 3
0.78 0.17 0.05
Matches are distributed among these distances:
32 4 0.08
33 44 0.88
34 2 0.04
ACGTcount: A:0.17, C:0.36, G:0.27, T:0.20
Consensus pattern (34 bp):
GGCACCCCAAGTCAGGGTGCCACCTTGGTTAGCA
Left flanking sequence: Indices 241020 -- 241519
GTACATAAGTCTCGCACTAAGTTAGTAAAACTTTCGTTTTCAATTGATTGATTCATTGGACCATT
AAATAAGCTTAGAAGGTAATCCCTGCAAACGTCTGGAGGATTGAAAACAGAGTAGATTTAAAGCA
ATCAATCCATTTGACCAGACTGCGTAAAGCGAAGTCATCGTAGAAAGCATTCAGACACGAACAGG
ATAGCACGAGTCAGGTAACAGCACTGGGAAGGGACTTGTATGGTGATCTACACCGAATCTACTTT
CATTTCCGTTTATATATATTTGTTTGGATTATAAGAGTATAAATACATTTGCAGTCATGAACCCC
ACGTTGAATTGTTACCGCGGTCCTTCTTACCCCAAGTCAGGCCACCACCACCTTGACCCCAAGTC
AGATTACCACCTTTGTTACCCCAGGACAGGTTGCCACCTTTGTTGCCCCATGACAGGTTGCCGCC
TTTATTGCCGGATCCCCACGTCAGTCCGCCTCCTTTGTCATTGTT
Right flanking sequence: Indices 241616 -- 242115
TCCAGAACCCCAGGTCAGATTGCCACCTGACGCACCCCATGCCAGCTGGTTGCCACCAGATGCAC
CCCAAGTGGATTGGTTGCCCGACCCCCAAGCCAGTTTTTCGCCTCCACCCCACTGTGAAACGTTG
CCCAGGGAAAAGGCAGGGGTCCGACCACCACCCGGGTTACCTCCCCAAGCAGTTCCGCCACCAGC
AGCAGGAGTGGCACCTCCGTTCCAAGCCAGTCTGCCGCCCAGAGCATAGGCGCGCGAACCTCCTT
GTTGTTGCGGCTCCGCGCTTTGGGCAGGTCCGCCAATGAAGCGAACGTATGGAATTGCCTGACCT
CTAATGAGAACATTGAGCTTGTTCTTGTCCACTTTGATTCGTTTCAGTTTAGTATGGAGCTCAAT
CGTGGCGACGGTATCAGTAGAGTCAACCACCTTACCCATCAACCCTTTGTAAACCCCCAGGGTAA
CAGAAACATCCTTCTGAATCAACTTGTCGCGGCCACCTCGGAAAG
Found at i:285639 original size:9 final size:9
Alignment explanation
Indices: 285625--285650 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
285615 TATAAAACTA
285625 AAGCCGCAC
1 AAGCCGCAC
285634 AAGCCGCAC
1 AAGCCGCAC
285643 AAGCCGCA
1 AAGCCGCA
285651 TCTGCACAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.35, C:0.42, G:0.23, T:0.00
Consensus pattern (9 bp):
AAGCCGCAC
Left flanking sequence: Indices 285125 -- 285624
ATCGAGTTACATTAGCTGAGATAAGTCCTCCTCGCAAACGTAAGCGGAGCCCTATGAACTCGCCC
ATAAAGAAACATCAGAAAATTGGCCAAATCCCTCGCCTTAGCTCCGGGCCCCTCTTACTAAAGTC
GGGAACCCAACTGCCAATGTCTCAACTGATCTTACCTCAAATTTCGAGAGACTCAAGATGTCAAG
ATTGGGAAACAGGGCGATGTGAGAATTCAAATTACGCTTTTGATGCCTCGCTTATGTCCACCCCG
ATCAAATGCTCCAATGAAATTGATCATTGGTGGTTTGACGAGCAGTCTTCACCAATGAAAGAGCT
AGCCTTCTCTCAAAGCATCCCGCAATTTTCTGGTCCCGAAGCTCATTCACAACTTTCGGAATCAG
GTCATTTTTTTAGCTCAAGACCACACACCAGAGCAATCGAAGATTACTTCAACCCGAACTTGGAT
CTCTTTTGGGACTAAATAGTCGTATGTCAAATGAATATAAAACTA
Right flanking sequence: Indices 285651 -- 286150
TCTGCACAATCCTGAGGGCGAAGCGCGGTAAAAACACGGTACCGTGATAACGTAATCGCTTACGC
AATAGTGTTCTGAAAAGACGAATTTCGTGAGGTGAGCCGTCAAGGGGTGCCAGACTCTGGACGAC
CTGTTCCTCTTGTGGTTTTCCGAGTGCCAGTTGGTGCCGCTGGAGAACCCTTGCCACATGTTGGA
CAGGTTAAAGACCTGGGCTCGCAACGTTTTGTATGGATTACGTTATCACGGTGCCGTGTTTTTAC
CGCCCTTCCCTGAGGGCGAACAAAAAAATTCAACCAGTTCACCAATCGACGCTGCTATGTTATTC
TTCTCGTTCTTCAAGACGCTTGTCGATCAGGAGGTGACAGTGGAATTGAAAAACGACATTGAAAT
TAAGGGAACGTTGAAGCTGGTTGATCAATTTTTGAATTTGAAACTCGACAATGTGTCCTGCGCGA
ATCAGATAAAGTATCCTCATTTGGGTTCCGTGAAAACATTATTCA
Found at i:292355 original size:18 final size:18
Alignment explanation
Indices: 292303--292356 Score: 63
Period size: 18 Copynumber: 3.0 Consensus size: 18
292293 TGAGTCGACT
*
292303 TCTTGTCATCGTCCTTCG
1 TCTTGTCATCGTCCTTGG
* *
292321 TCTTGTCATCATTCTTGG
1 TCTTGTCATCGTCCTTGG
* *
292339 TTTTGTCGTCGTCCTTGG
1 TCTTGTCATCGTCCTTGG
292357 ACTTAGACTC
Statistics
Matches: 29, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
18 29 1.00
ACGTcount: A:0.06, C:0.26, G:0.20, T:0.48
Consensus pattern (18 bp):
TCTTGTCATCGTCCTTGG
Left flanking sequence: Indices 291803 -- 292302
GTATCAACAAGGGTCACTTGTACAACAACACCAAGGCTGGCAGAAGAAAGACCTGGAAGAGACAG
AACACTTTGTCTTTGTGGAGATACAGAAAGTAAATGTCTTAACCTTTTGGTTGGGATATTTTCTA
AGCTGCGGTTTAATTTGTATAGGTTATAAACAGCTCTTCATAATTTCGTTAGGACCCAGGTGTTT
CCCTACCATGTCGCACAACTGCTGCCATAGAGTGGATCACGCGTGGAATCATCAAATTTAAAAAT
CCTACTGAATGTTAACTAGGCTCCGTTCCATTAAATCAAATCATTTCTATTCTAGACAATCGTCG
AAATCTCACCAGGAGACTTACATCAACAATAAAGCAACAGCGCCAACCGCAACGCCGTAAGGAGC
GTAGGCACCGGCAGCACCATTGTGAGAGTTCTCAGAGTTGACGGAATTGACAGACATAAGAGCAA
CGTCCGCTTGAGAAAGAACCGACTCCAACGGACTTTGAGTCGACT
Right flanking sequence: Indices 292357 -- 292856
ACTTAGACTCCTTAGGGGCTTCCGTGACTCCAGCACCAGCGGCACCATCGCCATTGGAGTCTTCC
GTTTTGGCAGGGGCATCGCCACCACCACCGTTACCTGTATCAAGTCTCAGGGCCCAAGGCAATTT
CAGAGCGAAACTTTTGAGCTCACCCACGTCAACATTGGAGTCGTCTAACAATGTGGTGTAAGAGT
CATCGGTGTAAGTTTGTACCTGGAAAGCCAACAGAGTAAGCTCCGCAGGTGGGTTGGCAGTAGCT
AAAAAGTCGATGTAAGACTTGGGGTTGGCCTTAAAATCAGTCACCAAAGCAGTCAAGAAGGCAAC
ATCACCTTCGTTAGCAGCCAAAGCCAAGGAGGCAGTCAATGCGAGATACACAGGCAAGTAGAACA
TGACGCGATAGAGTGTTTGGGCGGCGGATGTCTTATTATGTACTTTTTATGTACCCACCAGTAAT
TCAGATGCCATTGCCTATTTAGGAAATATCTCTGTGGGGATAAAT
Found at i:302206 original size:12 final size:12
Alignment explanation
Indices: 302183--302215 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
302173 ATAAAGTCTC
302183 CTTGGG-TTTTA
1 CTTGGGTTTTTA
302194 CTTGGGTTTTTA
1 CTTGGGTTTTTA
*
302206 CATGGGTTTT
1 CTTGGGTTTT
302216 CCCTGAATTG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
11 6 0.30
12 14 0.70
ACGTcount: A:0.09, C:0.09, G:0.27, T:0.55
Consensus pattern (12 bp):
CTTGGGTTTTTA
Left flanking sequence: Indices 301683 -- 302182
ATAGTTGTGCAGTTCTGAGTATATGAATGGCAATGGGAGTACTCGGGAGTTAGTGCGGATAGCCA
GTCGTCAATTGGCGTGTCGCAAGCGTAATAACCTAAGGATCGGGTTAGGGGATCCTCAATGGGTG
GGCAAAGTTCTCAAATATTGGGGCGTGCGCAGCCCAATCATTTGTGCGTAGCGATAGTCGGCAAC
CACGCCTTCACAACTACACCGGCAAAACTATTGAAAGAAGTGTTGGTTTATTCTTTGGAGACATC
TAAAGTTATAACTAACTGTTCTCAAAGCTCTCTGGTTTAACTCGTTTCTTGTTGTATTGTCAGTT
TCGTCATTGGTCAAGGTTAAGCATATTTTGACAGCGTTGCTATCGTTTGCGAGTGACGTTTTGCC
TCGATCTGGTTCGAAGCGTTTGCTCGCTGAGGGGAAGAATCACAGCCGAGAATACTCAAGTCTAA
TAAAAAAGTCAGGGAAAACCCAAGTAAAGTCCCAAATAAAGTCTC
Right flanking sequence: Indices 302216 -- 302715
CCCTGAATTGACCTCTTGAACCTCCTGACGGTTTTACAATTCTACTAGAATTTCAAAAGGAGCAT
GACTAGGTACCATCCAGCTTTTTGGATGTGATGACCTCACCGCTTGCTTTTACGGGAAGAACCAA
GCGTCTAACGCACGACTGAATTTCGTAACTCAGTGCCATCTATTTGCAAGGACCGACTGCCTAAA
TGGGAAGGGTGTAGTGCTGCAAACGACTTTGCGTTTGAAATTTTTCAATCGATCTTATGGAAAGT
GCTTAGATGAATGATGCTTAGATGAATGATATTTTCTAATCGTACATTACACTATGTATACATTT
AAGCAGTGGTGGCCTTCTTGGCAGCCTCAGTGGGGGCAACCTTTCTGTCCTGGTTGAATCTCTTT
CTCTGGGGAGGAGTTCTAATCTTTCTGTCCTGTCTAGATCTGACTCTGACAATTCTGGCGTGAAT
GGCACACGACACACAGTAGTGCAACTTGTTGTACAACTTAGGCAA
Found at i:302495 original size:15 final size:15
Alignment explanation
Indices: 302475--302505 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
302465 TTATGGAAAG
302475 TGCTTAGATGAATGA
1 TGCTTAGATGAATGA
302490 TGCTTAGATGAATGA
1 TGCTTAGATGAATGA
302505 T
1 T
302506 ATTTTCTAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.32, C:0.06, G:0.26, T:0.35
Consensus pattern (15 bp):
TGCTTAGATGAATGA
Left flanking sequence: Indices 301975 -- 302474
TGGTTTAACTCGTTTCTTGTTGTATTGTCAGTTTCGTCATTGGTCAAGGTTAAGCATATTTTGAC
AGCGTTGCTATCGTTTGCGAGTGACGTTTTGCCTCGATCTGGTTCGAAGCGTTTGCTCGCTGAGG
GGAAGAATCACAGCCGAGAATACTCAAGTCTAATAAAAAAGTCAGGGAAAACCCAAGTAAAGTCC
CAAATAAAGTCTCCTTGGGTTTTACTTGGGTTTTTACATGGGTTTTCCCTGAATTGACCTCTTGA
ACCTCCTGACGGTTTTACAATTCTACTAGAATTTCAAAAGGAGCATGACTAGGTACCATCCAGCT
TTTTGGATGTGATGACCTCACCGCTTGCTTTTACGGGAAGAACCAAGCGTCTAACGCACGACTGA
ATTTCGTAACTCAGTGCCATCTATTTGCAAGGACCGACTGCCTAAATGGGAAGGGTGTAGTGCTG
CAAACGACTTTGCGTTTGAAATTTTTCAATCGATCTTATGGAAAG
Right flanking sequence: Indices 302506 -- 303005
ATTTTCTAATCGTACATTACACTATGTATACATTTAAGCAGTGGTGGCCTTCTTGGCAGCCTCAG
TGGGGGCAACCTTTCTGTCCTGGTTGAATCTCTTTCTCTGGGGAGGAGTTCTAATCTTTCTGTCC
TGTCTAGATCTGACTCTGACAATTCTGGCGTGAATGGCACACGACACACAGTAGTGCAACTTGTT
GTACAACTTAGGCAAGGCGTACTCCTTGTAGACGGAGGCGTCAGACAAGTCTCTGACGGCGGCGG
CCTCAACCATGTTTCTGATGGTCACACGCTTGATGGCCTTGTCCTTAGGGACACATCTGGCACAG
TTCAAACATCTGACAGGGTTGACGTGGCCTCTACCCTTCTTGTTTCTGCCGGAGGATTTTCTCTT
CTTGGACATGTTGTGTTGAGAGAGTGTAGAAAAAAATTCACTTATTCATACGGGAGGAAGCCTCT
GTCGCGCACAGTGTATAAGTCACGTGTATAGAGGTCTCAAACCCT
Found at i:360201 original size:18 final size:17
Alignment explanation
Indices: 360180--360221 Score: 57
Period size: 18 Copynumber: 2.4 Consensus size: 17
360170 TGCCGCTGAA
360180 CCAGCCGATGCCGATGGG
1 CCAGCCG-TGCCGATGGG
*
360198 CCAGCCCGTGTCGATGGG
1 CCAG-CCGTGCCGATGGG
360216 CCAGCC
1 CCAGCC
360222 AGCGTCGCTT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
17 2 0.09
18 17 0.77
19 3 0.14
ACGTcount: A:0.14, C:0.38, G:0.36, T:0.12
Consensus pattern (17 bp):
CCAGCCGTGCCGATGGG
Left flanking sequence: Indices 359680 -- 360179
GCGTTGGGGCTCCCCACCATGGAGCTGTTGACTCTACCGCTGACGGCGATCGACATCCCGTCGCT
GCTGCCGCAGCCCCGCCCCCGTGTGCGTTCGGGGCTGTTGTTTCTGACCAACCTGATCTGGAACG
ACGGAGCCCCAGGTTCGCTGCCTCAGCTGGTGCGTCTGTTTGAGCCGGATCAGCCGTTTTTGGCG
GTGCCGCTGGATGCTCCTCACCAGCGTAACCGGTCCTACACCACCACCGGTGCCCAAATGCCGCC
CCAGCCCTACTCGTTGTTGGAGCTGATTGGCGGTTCCCGGGTGCTGCCCTTTGCCAGCACTCTGA
ACAAGACCGACGTCAACGCGTTGTTGGACTCGCTCATGCTGAACATCAACGACCCAGGCTACTCT
CCGGCACCCCGGTTGCGGTCACAGACAATTTCGGGCCCGTCGCCGGGGGCCGACTCGTTCATGGC
TCTGCAGTACTACCAGCTGCTGGTGGTGCCCGTGATGCCGCTGAA
Right flanking sequence: Indices 360222 -- 360721
AGCGTCGCTTTCGCAGCCTTCGATGCCGCTCCTTCCCCAGCTCCAACAACCTCCTCAGCCACAGC
AGTCCCAGCTGCAGCCCATGTACCCCCTGCAACCACTGCCTCCCCAGCTCATCGACGACTTTAAT
CTTTCCCAGGTCGCCATCACCACCAACTTTGACAATCCCAACTTGGGCCCCACCAAGCACATTTT
GCTTGACAATTTGCCTCAATTCATCAACCTGGCCAAGCTTTTTCTGATTTTGAACTCGCTGTTGG
GCAACCAGCGCCAATTTGGTGGCATCCGCTCGGTGCGATTGGCTGCAATCAACGCGCTGAAGCTC
GCGTTGGTTGAGTGCTCCAACGTGGACACGGCCATGCTGCTCAAGGCCAGCTTCAACCATGTTGA
GTTTGTACCTGGTGTCGTTCTTTACGTGGCATTTGCCAAGGTTACCGATCTTGATGCCTCTAGCG
GTAACGGTTCTGCTGGAGCTGAGTCTTATGGGGGTCAGTCGGCCC
Found at i:360228 original size:18 final size:18
Alignment explanation
Indices: 360191--360228 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
360181 CAGCCGATGC
* *
360191 CGATGGGCCAGCCCGTGT
1 CGATGGGCCAGCCAGCGT
360209 CGATGGGCCAGCCAGCGT
1 CGATGGGCCAGCCAGCGT
360227 CG
1 CG
360229 CTTTCGCAGC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.13, C:0.34, G:0.39, T:0.13
Consensus pattern (18 bp):
CGATGGGCCAGCCAGCGT
Left flanking sequence: Indices 359691 -- 360190
CCCCACCATGGAGCTGTTGACTCTACCGCTGACGGCGATCGACATCCCGTCGCTGCTGCCGCAGC
CCCGCCCCCGTGTGCGTTCGGGGCTGTTGTTTCTGACCAACCTGATCTGGAACGACGGAGCCCCA
GGTTCGCTGCCTCAGCTGGTGCGTCTGTTTGAGCCGGATCAGCCGTTTTTGGCGGTGCCGCTGGA
TGCTCCTCACCAGCGTAACCGGTCCTACACCACCACCGGTGCCCAAATGCCGCCCCAGCCCTACT
CGTTGTTGGAGCTGATTGGCGGTTCCCGGGTGCTGCCCTTTGCCAGCACTCTGAACAAGACCGAC
GTCAACGCGTTGTTGGACTCGCTCATGCTGAACATCAACGACCCAGGCTACTCTCCGGCACCCCG
GTTGCGGTCACAGACAATTTCGGGCCCGTCGCCGGGGGCCGACTCGTTCATGGCTCTGCAGTACT
ACCAGCTGCTGGTGGTGCCCGTGATGCCGCTGAACCAGCCGATGC
Right flanking sequence: Indices 360229 -- 360728
CTTTCGCAGCCTTCGATGCCGCTCCTTCCCCAGCTCCAACAACCTCCTCAGCCACAGCAGTCCCA
GCTGCAGCCCATGTACCCCCTGCAACCACTGCCTCCCCAGCTCATCGACGACTTTAATCTTTCCC
AGGTCGCCATCACCACCAACTTTGACAATCCCAACTTGGGCCCCACCAAGCACATTTTGCTTGAC
AATTTGCCTCAATTCATCAACCTGGCCAAGCTTTTTCTGATTTTGAACTCGCTGTTGGGCAACCA
GCGCCAATTTGGTGGCATCCGCTCGGTGCGATTGGCTGCAATCAACGCGCTGAAGCTCGCGTTGG
TTGAGTGCTCCAACGTGGACACGGCCATGCTGCTCAAGGCCAGCTTCAACCATGTTGAGTTTGTA
CCTGGTGTCGTTCTTTACGTGGCATTTGCCAAGGTTACCGATCTTGATGCCTCTAGCGGTAACGG
TTCTGCTGGAGCTGAGTCTTATGGGGGTCAGTCGGCCCCACTGAG
Found at i:362331 original size:9 final size:9
Alignment explanation
Indices: 362326--362350 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
362316 ACCGCAGCAC
362326 CAGCAGCCT
1 CAGCAGCCT
362335 CAGCAGCCT
1 CAGCAGCCT
362344 CAGCAGC
1 CAGCAGC
362351 AAAGCCAACA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.24, C:0.44, G:0.24, T:0.08
Consensus pattern (9 bp):
CAGCAGCCT
Left flanking sequence: Indices 361826 -- 362325
ACAAGCTTGCCAACCTCACTATTCTCAAGATAGTGAACAACCGCCTGGACCCGATACTGAAACGC
GCTGTGTTGGATGCTCTTTTCGGGCCTTTTGATCCCAACAGCGACTTTGCATACCCAACGCCCAC
GAGACTTTTGGAATCGATTCTTGCTGAGAGTCATGACCACAACCCTGCTGGCCCCTTGTTCGTCT
ACAAGCTCGTTTCGAACCCAGTGGCGTTGCAGTTGGGTGATGACCCGCGTGTCAATGGTCGCTAT
CTGGAGTTTGCCATCGCGCAAGTGAAGCGTGTGTTGTTGGAGCTGAACATTGCTAACTTGCAGCC
GTATAAGAAGCTCATGGAAGAGGTAGGGTTGCCTATCTCTCGCTTGGGGCGTTCTTCTCTGGTTG
GCGCACCCTCGGGATCTCGTCGTGGCAAACGCATGGGTCAGGGCTCGCGCAATGGGCATAAAGGC
TATGGCAATGGCTATTACGAGCACCAGGGTCAGCAACCGCAGCAC
Right flanking sequence: Indices 362351 -- 362850
AAAGCCAACAGCAATACTCGCAGCAGTATCAGCAGCAACAATACCCGGCGGGCCCGATGCACGTT
TTGTCTCACCAACAACAGCAACAACAACAACCAGTCTACATGCAACAACCCCAACCGCCTCAAGT
GGCGAACGACAAGCAGCCGTCGCAGCAGGACATGGCAGTCATGAAGCAGTTGGAGCAACTTTCGT
TGAGTTCAGCTGCCATGGGGTACAACTCCAATCCTGGTACACCCACCGTGAACAAGCATCCAAGT
CAATTCTGACACTGGGAGAGAGATGAAATGACGAGACACCAAAAGAATAAAAAAGCAAAAAAATA
CGACGGAACGGACAAGTAAATATAGTAAGTAATAGGTAATATGCATTTCAATAGTATACACAATA
AACTCCCATAACCAATCTACTATCATTAAAATAATTTCGTTTATTGCTAGAAAAAACGGGACTTA
CCCGGCAAAATTCAACGCTAAACAAAACCTACACGTCCATAGTGT
Found at i:376946 original size:24 final size:24
Alignment explanation
Indices: 376919--376978 Score: 66
Period size: 24 Copynumber: 2.5 Consensus size: 24
376909 GGGATGATGG
* **
376919 GACAGCGGTCTCGACAGTGGCCTT
1 GACAGCGGTCGCGACAGTGGCCGA
* * *
376943 GACAGAGGACGCGACAGTGGTCGA
1 GACAGCGGTCGCGACAGTGGCCGA
376967 GACAGCGGTCGC
1 GACAGCGGTCGC
376979 AGTTGGCGTC
Statistics
Matches: 28, Mismatches: 8, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.22, C:0.27, G:0.38, T:0.13
Consensus pattern (24 bp):
GACAGCGGTCGCGACAGTGGCCGA
Left flanking sequence: Indices 376419 -- 376918
CCGCAGGAGTCACCGGCTGCTGGCTCTTGGTGAGGGCAAGCTGTACACAACCGATAAACGACATG
AACAAGTACTCGGTCAGCCGGTTTGTGGCGAGCTCCTGTTTGAACTGAGGATTAAGCATTTTGTT
GTAGAGTTCAAGGAGGGACCGGCGAGTGGCGTCGTCAACCAGGGTGTCTTGCTTCACGGCGATGG
TGCGTAATCGCTCTTCGAGGTCTTTGATAGTCGATGATGAAAGCTTGCTGTCCTTGGTAGGTGTG
GCCGGTGTCATCGGAGGTGGGGTGGGAGCAGCCACCACTGTGGGGGCTGTGAACCGGATGTTGTT
GGCGTACTCAAGAACAAGCACTTGAAGCACCGCCATGTAGAGCTCCTGAAGTTCCACCCCATCGT
AGTCGTCGTCGTGCGCCACCACCAGCAGCATCAGATTTGTGTGGCCCGGGATCTCGCTTAACGGA
CGCAGTCCCGGGATCTGCGACACAGGACGCGAGCTGGGATGATGG
Right flanking sequence: Indices 376979 -- 377478
AGTTGGCGTCGGGGCGTGGTTGCGGTTCGTGCCCGGCCATCAGAGGGGTACGCGTCGTAGTCGCC
AGAGACGTGACGACTGTGTGTACCGTTCATGGGTGGAAGGAATGCAAAGGGTGGTCTCGCTTTGA
GCAAGGGAAGAGACCGTGACGTTAATGAATGTACACTGTAGGAAACGTCGGCAGCAGACACCTAA
TGCGGGAACTCGCCACGTTAGGAGACGAGACACACGGAGTAAAAGACGGAAAAGTCGAGGAGTTT
TCGACGGCTTCCAGTAAGCTGACAAGCTGGCACGTGTGTAAAAGGAGTGCTAGGGGTCCCCGGAT
CGCAACCGCTGGTATGTTTGGGTGTCAGGTGGAGAAAACCTGCAACGCGCTGCTGCAGATCAGAT
TAGTGGTTGCCCGCAAAAGTTTAAAATAGGTCACGATGGGTAAGCGCGTGACGCGAGTGCCGATT
GTGAGAAGGTGTACGTAGCTGGAGTGGGTGTAGAGCTGTACCTAC
Found at i:389633 original size:51 final size:51
Alignment explanation
Indices: 389571--389723 Score: 261
Period size: 51 Copynumber: 3.0 Consensus size: 51
389561 CGGACTCGGA
*
389571 AGCACCAGACTCCTCGGCGGCAGAGCCGGAGGCGTCAGCACCAGACTCCTC
1 AGCACCAGACTCCTCGGCGGCAGAGCCGGAAGCGTCAGCACCAGACTCCTC
*
389622 AGCACCAGACTCCTCGGCGGCAGAGCCGGAAGCGTCAGCACCGGACTCCTC
1 AGCACCAGACTCCTCGGCGGCAGAGCCGGAAGCGTCAGCACCAGACTCCTC
* * *
389673 AGCACCGGACTCCTCGGCGGCAGAGCCAGAAGCCTCAGCACCAGACTCCTC
1 AGCACCAGACTCCTCGGCGGCAGAGCCGGAAGCGTCAGCACCAGACTCCTC
389724 GGCGGCGGAG
Statistics
Matches: 96, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
51 96 1.00
ACGTcount: A:0.22, C:0.40, G:0.28, T:0.10
Consensus pattern (51 bp):
AGCACCAGACTCCTCGGCGGCAGAGCCGGAAGCGTCAGCACCAGACTCCTC
Left flanking sequence: Indices 389071 -- 389570
GTGGCGTGGTTTCGGATAGACGTATTGTCGGTTCTAGAAGAATAATATAACCGCGCCACAGTTGC
CACAGAGAACAATAAGTGAAATAGGTAAACATTAGACGAAAGCAACCCAGCGAACCCAGCACTGC
CTCTTGTTTTCTTTTCCAGCAAGATGGGCCCACGTTGTTGAGCTGCGCATGCTCGCTAGCCCCAC
GTTTTTACTTTTCCGAGTTTACCGCGCGTCACCCCGCCCAGATCGATGCATACCGGGCCTACCCC
TTGCAACCTCCATTTATCGTGCTTCAATTTATCAAATTAAGTCTTATTAATTATACAGTTTTAAA
CTTACAACAACAAGGCACCGGCAACAGCGCCGACGAAAGCCATACCGTAAGTGAAGGGAGCGATA
GCGGCGGCACCGGAACCGTCACCGGAACCGTTGGAGCCGTTACCCTTACCACCACCAGTGGAGTT
GGAGCCAGAGCCGCCACCAACACCGGCGCCGGCACCGGACTCGGA
Right flanking sequence: Indices 389724 -- 390223
GGCGGCGGAGCCAGACTCCTCAGCACCGGTAGCGGCGGCGGACTCGGCGCCAGACTCACCAGCAC
CAGCAGCAGACTCAACGCCAGAGGCACCGGCCTCACCAAGAGACTCGGCACCAGAGGCACCAGCA
CCAGCGGCGGAAGTCACGGCGGCGGCAACATCGGTAGTGTCGTTGTCGTCAGCGCGAGCGAAGGC
GGCGATAGCAGAAACAGCCAAAACTTGAGTGAACTTCATTGTAGATACTGAATTAAAAAAACCAT
GAGACTGGTAGCTTTTTATATTCAAAAACCAGACCCTCCACCACCACACTCGCCTAAAAATATTA
TATTTTTTCGGTACTTCCCCTGTTTTGAGCGTCGTTCATATGCTCAAAAGAGGTAAATTGAAAAC
GCGTGCAGAAGGCACGGTGGGTCGTGGTCGTGTCGACTGTGGGGTGAAGCGCGGTTTGATCACTC
CTGTCGACACGTCTGACAAATATCTGGTTTTGTTTTCGTATCTGG
Found at i:389645 original size:15 final size:15
Alignment explanation
Indices: 389605--389636 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
389595 GCCGGAGGCG
389605 TCAGCACCAGACTCC
1 TCAGCACCAGACTCC
389620 TCAGCACCAGACTCC
1 TCAGCACCAGACTCC
389635 TC
1 TC
389637 GGCGGCAGAG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.25, C:0.47, G:0.12, T:0.16
Consensus pattern (15 bp):
TCAGCACCAGACTCC
Left flanking sequence: Indices 389105 -- 389604
TAGAAGAATAATATAACCGCGCCACAGTTGCCACAGAGAACAATAAGTGAAATAGGTAAACATTA
GACGAAAGCAACCCAGCGAACCCAGCACTGCCTCTTGTTTTCTTTTCCAGCAAGATGGGCCCACG
TTGTTGAGCTGCGCATGCTCGCTAGCCCCACGTTTTTACTTTTCCGAGTTTACCGCGCGTCACCC
CGCCCAGATCGATGCATACCGGGCCTACCCCTTGCAACCTCCATTTATCGTGCTTCAATTTATCA
AATTAAGTCTTATTAATTATACAGTTTTAAACTTACAACAACAAGGCACCGGCAACAGCGCCGAC
GAAAGCCATACCGTAAGTGAAGGGAGCGATAGCGGCGGCACCGGAACCGTCACCGGAACCGTTGG
AGCCGTTACCCTTACCACCACCAGTGGAGTTGGAGCCAGAGCCGCCACCAACACCGGCGCCGGCA
CCGGACTCGGAAGCACCAGACTCCTCGGCGGCAGAGCCGGAGGCG
Right flanking sequence: Indices 389637 -- 390136
GGCGGCAGAGCCGGAAGCGTCAGCACCGGACTCCTCAGCACCGGACTCCTCGGCGGCAGAGCCAG
AAGCCTCAGCACCAGACTCCTCGGCGGCGGAGCCAGACTCCTCAGCACCGGTAGCGGCGGCGGAC
TCGGCGCCAGACTCACCAGCACCAGCAGCAGACTCAACGCCAGAGGCACCGGCCTCACCAAGAGA
CTCGGCACCAGAGGCACCAGCACCAGCGGCGGAAGTCACGGCGGCGGCAACATCGGTAGTGTCGT
TGTCGTCAGCGCGAGCGAAGGCGGCGATAGCAGAAACAGCCAAAACTTGAGTGAACTTCATTGTA
GATACTGAATTAAAAAAACCATGAGACTGGTAGCTTTTTATATTCAAAAACCAGACCCTCCACCA
CCACACTCGCCTAAAAATATTATATTTTTTCGGTACTTCCCCTGTTTTGAGCGTCGTTCATATGC
TCAAAAGAGGTAAATTGAAAACGCGTGCAGAAGGCACGGTGGGTC
Found at i:389674 original size:15 final size:15
Alignment explanation
Indices: 389656--389687 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
389646 GCCGGAAGCG
389656 TCAGCACCGGACTCC
1 TCAGCACCGGACTCC
389671 TCAGCACCGGACTCC
1 TCAGCACCGGACTCC
389686 TC
1 TC
389688 GGCGGCAGAG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.19, C:0.47, G:0.19, T:0.16
Consensus pattern (15 bp):
TCAGCACCGGACTCC
Left flanking sequence: Indices 389156 -- 389655
ATAGGTAAACATTAGACGAAAGCAACCCAGCGAACCCAGCACTGCCTCTTGTTTTCTTTTCCAGC
AAGATGGGCCCACGTTGTTGAGCTGCGCATGCTCGCTAGCCCCACGTTTTTACTTTTCCGAGTTT
ACCGCGCGTCACCCCGCCCAGATCGATGCATACCGGGCCTACCCCTTGCAACCTCCATTTATCGT
GCTTCAATTTATCAAATTAAGTCTTATTAATTATACAGTTTTAAACTTACAACAACAAGGCACCG
GCAACAGCGCCGACGAAAGCCATACCGTAAGTGAAGGGAGCGATAGCGGCGGCACCGGAACCGTC
ACCGGAACCGTTGGAGCCGTTACCCTTACCACCACCAGTGGAGTTGGAGCCAGAGCCGCCACCAA
CACCGGCGCCGGCACCGGACTCGGAAGCACCAGACTCCTCGGCGGCAGAGCCGGAGGCGTCAGCA
CCAGACTCCTCAGCACCAGACTCCTCGGCGGCAGAGCCGGAAGCG
Right flanking sequence: Indices 389688 -- 390187
GGCGGCAGAGCCAGAAGCCTCAGCACCAGACTCCTCGGCGGCGGAGCCAGACTCCTCAGCACCGG
TAGCGGCGGCGGACTCGGCGCCAGACTCACCAGCACCAGCAGCAGACTCAACGCCAGAGGCACCG
GCCTCACCAAGAGACTCGGCACCAGAGGCACCAGCACCAGCGGCGGAAGTCACGGCGGCGGCAAC
ATCGGTAGTGTCGTTGTCGTCAGCGCGAGCGAAGGCGGCGATAGCAGAAACAGCCAAAACTTGAG
TGAACTTCATTGTAGATACTGAATTAAAAAAACCATGAGACTGGTAGCTTTTTATATTCAAAAAC
CAGACCCTCCACCACCACACTCGCCTAAAAATATTATATTTTTTCGGTACTTCCCCTGTTTTGAG
CGTCGTTCATATGCTCAAAAGAGGTAAATTGAAAACGCGTGCAGAAGGCACGGTGGGTCGTGGTC
GTGTCGACTGTGGGGTGAAGCGCGGTTTGATCACTCCTGTCGACA
Found at i:389720 original size:36 final size:36
Alignment explanation
Indices: 389669--389750 Score: 128
Period size: 36 Copynumber: 2.3 Consensus size: 36
389659 GCACCGGACT
*
389669 CCTCAGCACCGGACTCCTCGGCGGCAGAGCCAGAAG
1 CCTCAGCACCAGACTCCTCGGCGGCAGAGCCAGAAG
* **
389705 CCTCAGCACCAGACTCCTCGGCGGCGGAGCCAGACT
1 CCTCAGCACCAGACTCCTCGGCGGCAGAGCCAGAAG
389741 CCTCAGCACC
1 CCTCAGCACC
389751 GGTAGCGGCG
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
36 42 1.00
ACGTcount: A:0.21, C:0.43, G:0.27, T:0.10
Consensus pattern (36 bp):
CCTCAGCACCAGACTCCTCGGCGGCAGAGCCAGAAG
Left flanking sequence: Indices 389169 -- 389668
AGACGAAAGCAACCCAGCGAACCCAGCACTGCCTCTTGTTTTCTTTTCCAGCAAGATGGGCCCAC
GTTGTTGAGCTGCGCATGCTCGCTAGCCCCACGTTTTTACTTTTCCGAGTTTACCGCGCGTCACC
CCGCCCAGATCGATGCATACCGGGCCTACCCCTTGCAACCTCCATTTATCGTGCTTCAATTTATC
AAATTAAGTCTTATTAATTATACAGTTTTAAACTTACAACAACAAGGCACCGGCAACAGCGCCGA
CGAAAGCCATACCGTAAGTGAAGGGAGCGATAGCGGCGGCACCGGAACCGTCACCGGAACCGTTG
GAGCCGTTACCCTTACCACCACCAGTGGAGTTGGAGCCAGAGCCGCCACCAACACCGGCGCCGGC
ACCGGACTCGGAAGCACCAGACTCCTCGGCGGCAGAGCCGGAGGCGTCAGCACCAGACTCCTCAG
CACCAGACTCCTCGGCGGCAGAGCCGGAAGCGTCAGCACCGGACT
Right flanking sequence: Indices 389751 -- 390250
GGTAGCGGCGGCGGACTCGGCGCCAGACTCACCAGCACCAGCAGCAGACTCAACGCCAGAGGCAC
CGGCCTCACCAAGAGACTCGGCACCAGAGGCACCAGCACCAGCGGCGGAAGTCACGGCGGCGGCA
ACATCGGTAGTGTCGTTGTCGTCAGCGCGAGCGAAGGCGGCGATAGCAGAAACAGCCAAAACTTG
AGTGAACTTCATTGTAGATACTGAATTAAAAAAACCATGAGACTGGTAGCTTTTTATATTCAAAA
ACCAGACCCTCCACCACCACACTCGCCTAAAAATATTATATTTTTTCGGTACTTCCCCTGTTTTG
AGCGTCGTTCATATGCTCAAAAGAGGTAAATTGAAAACGCGTGCAGAAGGCACGGTGGGTCGTGG
TCGTGTCGACTGTGGGGTGAAGCGCGGTTTGATCACTCCTGTCGACACGTCTGACAAATATCTGG
TTTTGTTTTCGTATCTGGAACCGAGTATTCCGGCAACATCCTCGG
Found at i:394470 original size:9 final size:9
Alignment explanation
Indices: 394458--394499 Score: 57
Period size: 9 Copynumber: 4.7 Consensus size: 9
394448 CGGTGGTATG
394458 CGTGGTGGT
1 CGTGGTGGT
*
394467 CGTGGCGGT
1 CGTGGTGGT
*
394476 CGTGGCGGT
1 CGTGGTGGT
*
394485 CGTGGTGGC
1 CGTGGTGGT
394494 CGTGGT
1 CGTGGT
394500 CGTGGTGCCA
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 30 1.00
ACGTcount: A:0.00, C:0.19, G:0.55, T:0.26
Consensus pattern (9 bp):
CGTGGTGGT
Left flanking sequence: Indices 393958 -- 394457
TCAAACAAGAGCAACAGCAGCCCCCGAATCAGTCGCCATTCCAGTTCCAACCCAAGCAGGAACAA
CAACAACAACAGCCCCAAGGCCAACAGCCAGTGCTGCAACAGCAGCTTCAACAAGCGGATGCTGA
AATCGCCAAGTTGAAGCAGATGAACGCTGCTGCCGATGCGGGCCAGCCGGGTCCCATCACCGATG
ACGAAAAGCGAGACATCGATTCGAGACTGGTGTACGTGGGGAACGTCGACTACGAGGCCGGCCCC
GTCGAGTTGCAACAAATCTTCTCCGCGGTTGGTGTAGTCCAGCGTGTCACCATCTTGACTAACAA
AGCCACTGGGCAGCCCAAAGGGTTTGCTTATTTGGAGTTCGCCGAGCCCTCGAGCGTGGGACGTG
CTGTCCAGGAGTTGGACGGCACAATGTTGCGGGATCGTGCTCTCAAGGTGAACGCGAAGCGTACG
AACATTCCTGGCATCTCCACCACCAACCGCGGTCGCGGTGGTATG
Right flanking sequence: Indices 394500 -- 394999
CGTGGTGCCATGCGTGGCCGTGGCCGTTTCCAGCCCTACTAAGGTTTCATTAATATTGTATTATA
AATTATTACGATTCTGACTTTCATGAAAGGTTGTATTCTACTTGGAGGCGCTCTTGGCAGCTTGT
GTACGAGCGTAGGTGTCAGCAACTAACTTCAGCATGGCTTTTTTGCCGTCGTCACGTTCAAGACC
CATCACCACCCCGCGTACGTCGCCCTCCTTCTGGCTCTGGTCCATTTTATACTTGCATTGCCACT
CCCCGATCTCAATCTCTAACCCAATAATCGCTTTCTTCATGATCGAGGTGTACTTTTCCGGCGCA
TCACTCACCTTCCAGGGGGTAGCCCGGCTCTTCTCCTCTTGGGTCGTGAGGGACTCAAGTGCGTG
GTTCAAAAAGTCTAGTGTGTCCACGACACGAGAGGTGCCCTTGATGTGAGCTGACGCAAAGCACC
AAGTCGGGACTGCTTTATGCGTCGCAGGCTTCGTCTCTTCATACC
Found at i:424391 original size:21 final size:21
Alignment explanation
Indices: 424367--424406 Score: 64
Period size: 21 Copynumber: 1.9 Consensus size: 21
424357 GTGTCGTCAT
424367 TTTCTTCCTCGGC-CTCTTCAC
1 TTTCTTCCTC-GCTCTCTTCAC
424388 TTTCTTCCTCGCTCTCTTC
1 TTTCTTCCTCGCTCTCTTC
424407 TTCGCTCTCT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 2 0.11
21 16 0.89
ACGTcount: A:0.03, C:0.42, G:0.07, T:0.47
Consensus pattern (21 bp):
TTTCTTCCTCGCTCTCTTCAC
Left flanking sequence: Indices 423867 -- 424366
GGTGGTGTCAACCTTAGCATCCACCAATGCTTGCTTCAATTGGGTGCCAAACAGGTCGTTCCCGA
CATTGCCAACCATCCGGACTTTGGTCTCCGAACAGGCGTTGAGTCGGGCAGTGGCCAAAGCCTCA
TTGAGACCCTTGCCGCCCAAATGGTTTTCGAAAGCGTCCGCTTGGTACGTCTCCCCTCCAGCAGG
AACCTTCTTGGTGAATGTGACCAAGTCATAATTGAGAGACCCAACGATAGTGATGCGCGACATGT
TGGTTTCTTTAGGTTCTTTCGCAAGATATATTCCGAAGTTGAAGTATATGCAGTTCCCCCACATC
TCAGAATCTGGGGCGGTAAAATTATGATATATTGAAAATTATACAGAAACGTCGCTATCTTCAGA
ATCAGACGTTTCAGACTCTTTCGTTTTGTTTACGGACTTGATGGCTTCACCGATGGCTTCATCAG
TCTCGTTCTCCTCACCTTCGTCGTCTTCTTCGTCAGTGTCGTCAT
Right flanking sequence: Indices 424407 -- 424906
TTCGCTCTCTTCCTCCTCTGAGCTTCCGAAAAACTCGTCAAGTGACTGTAACCTGTACCCATTGG
TTTCCAGGCTTGAAGTCTTGACGGGGATCTCTTGGTTTAAAAGAGTCTTCCGGCGAATCGCTTCC
GCAGCGGATATACCTCCACCAAAGCCAGTTAGAGGGGGCGACAGTGATCGTGAACGTTTCAGCAT
AGGTTCCAGCTTCAAATGAGAGCTCAACGTGTTGGATATAACCTCGGTTTCCGTTCTAATCTCAG
CTGGTGGAAGCAGTTCGGGGTCTGCCCATTCTGGCACCGCCAGCATGAACAGGTCTCGGGGCTCA
GCAGCCATAGGCACCAGTTTCGGAACCTGTAAGAAAAGTGAGGCAAGCTTCAGTTGTTTCGTACC
CTTCAAGAGCACATTGAGCATGCGAGCACGATCACGGGTGTCATAGCTAGAATCGTACTTGGCCA
AGTGAAGTACGTGGTTGAACATCTTGTGAATACGCAGCTGTTCAA
Found at i:424411 original size:12 final size:12
Alignment explanation
Indices: 424390--424425 Score: 56
Period size: 12 Copynumber: 3.1 Consensus size: 12
424380 CTCTTCACTT
424390 TCTTCCTCGCTC
1 TCTTCCTCGCTC
*
424402 TCTTCTTCGCTC
1 TCTTCCTCGCTC
424414 TCTTCCTC-CTC
1 TCTTCCTCGCTC
424425 T
1 T
424426 GAGCTTCCGA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
11 4 0.18
12 18 0.82
ACGTcount: A:0.00, C:0.47, G:0.06, T:0.47
Consensus pattern (12 bp):
TCTTCCTCGCTC
Left flanking sequence: Indices 423890 -- 424389
CCAATGCTTGCTTCAATTGGGTGCCAAACAGGTCGTTCCCGACATTGCCAACCATCCGGACTTTG
GTCTCCGAACAGGCGTTGAGTCGGGCAGTGGCCAAAGCCTCATTGAGACCCTTGCCGCCCAAATG
GTTTTCGAAAGCGTCCGCTTGGTACGTCTCCCCTCCAGCAGGAACCTTCTTGGTGAATGTGACCA
AGTCATAATTGAGAGACCCAACGATAGTGATGCGCGACATGTTGGTTTCTTTAGGTTCTTTCGCA
AGATATATTCCGAAGTTGAAGTATATGCAGTTCCCCCACATCTCAGAATCTGGGGCGGTAAAATT
ATGATATATTGAAAATTATACAGAAACGTCGCTATCTTCAGAATCAGACGTTTCAGACTCTTTCG
TTTTGTTTACGGACTTGATGGCTTCACCGATGGCTTCATCAGTCTCGTTCTCCTCACCTTCGTCG
TCTTCTTCGTCAGTGTCGTCATTTTCTTCCTCGGCCTCTTCACTT
Right flanking sequence: Indices 424426 -- 424925
GAGCTTCCGAAAAACTCGTCAAGTGACTGTAACCTGTACCCATTGGTTTCCAGGCTTGAAGTCTT
GACGGGGATCTCTTGGTTTAAAAGAGTCTTCCGGCGAATCGCTTCCGCAGCGGATATACCTCCAC
CAAAGCCAGTTAGAGGGGGCGACAGTGATCGTGAACGTTTCAGCATAGGTTCCAGCTTCAAATGA
GAGCTCAACGTGTTGGATATAACCTCGGTTTCCGTTCTAATCTCAGCTGGTGGAAGCAGTTCGGG
GTCTGCCCATTCTGGCACCGCCAGCATGAACAGGTCTCGGGGCTCAGCAGCCATAGGCACCAGTT
TCGGAACCTGTAAGAAAAGTGAGGCAAGCTTCAGTTGTTTCGTACCCTTCAAGAGCACATTGAGC
ATGCGAGCACGATCACGGGTGTCATAGCTAGAATCGTACTTGGCCAAGTGAAGTACGTGGTTGAA
CATCTTGTGAATACGCAGCTGTTCAACAACGTCCGGAAGCTGGTC
Found at i:424417 original size:24 final size:23
Alignment explanation
Indices: 424381--424425 Score: 63
Period size: 24 Copynumber: 1.9 Consensus size: 23
424371 TTCCTCGGCC
*
424381 TCTTCACTTTCTTCCTCGCTCTCT
1 TCTTCACTCTCTTCCTC-CTCTCT
*
424405 TCTTCGCTCTCTTCCTCCTCT
1 TCTTCACTCTCTTCCTCCTCT
424426 GAGCTTCCGA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 4 0.21
24 15 0.79
ACGTcount: A:0.02, C:0.44, G:0.04, T:0.49
Consensus pattern (23 bp):
TCTTCACTCTCTTCCTCCTCTCT
Left flanking sequence: Indices 423881 -- 424380
TAGCATCCACCAATGCTTGCTTCAATTGGGTGCCAAACAGGTCGTTCCCGACATTGCCAACCATC
CGGACTTTGGTCTCCGAACAGGCGTTGAGTCGGGCAGTGGCCAAAGCCTCATTGAGACCCTTGCC
GCCCAAATGGTTTTCGAAAGCGTCCGCTTGGTACGTCTCCCCTCCAGCAGGAACCTTCTTGGTGA
ATGTGACCAAGTCATAATTGAGAGACCCAACGATAGTGATGCGCGACATGTTGGTTTCTTTAGGT
TCTTTCGCAAGATATATTCCGAAGTTGAAGTATATGCAGTTCCCCCACATCTCAGAATCTGGGGC
GGTAAAATTATGATATATTGAAAATTATACAGAAACGTCGCTATCTTCAGAATCAGACGTTTCAG
ACTCTTTCGTTTTGTTTACGGACTTGATGGCTTCACCGATGGCTTCATCAGTCTCGTTCTCCTCA
CCTTCGTCGTCTTCTTCGTCAGTGTCGTCATTTTCTTCCTCGGCC
Right flanking sequence: Indices 424426 -- 424925
GAGCTTCCGAAAAACTCGTCAAGTGACTGTAACCTGTACCCATTGGTTTCCAGGCTTGAAGTCTT
GACGGGGATCTCTTGGTTTAAAAGAGTCTTCCGGCGAATCGCTTCCGCAGCGGATATACCTCCAC
CAAAGCCAGTTAGAGGGGGCGACAGTGATCGTGAACGTTTCAGCATAGGTTCCAGCTTCAAATGA
GAGCTCAACGTGTTGGATATAACCTCGGTTTCCGTTCTAATCTCAGCTGGTGGAAGCAGTTCGGG
GTCTGCCCATTCTGGCACCGCCAGCATGAACAGGTCTCGGGGCTCAGCAGCCATAGGCACCAGTT
TCGGAACCTGTAAGAAAAGTGAGGCAAGCTTCAGTTGTTTCGTACCCTTCAAGAGCACATTGAGC
ATGCGAGCACGATCACGGGTGTCATAGCTAGAATCGTACTTGGCCAAGTGAAGTACGTGGTTGAA
CATCTTGTGAATACGCAGCTGTTCAACAACGTCCGGAAGCTGGTC
Found at i:433028 original size:9 final size:9
Alignment explanation
Indices: 433011--433053 Score: 68
Period size: 9 Copynumber: 4.8 Consensus size: 9
433001 GTCTGTTGAC
*
433011 GCTGCTGCT
1 GCTGTTGCT
433020 GCTGTTGCT
1 GCTGTTGCT
*
433029 GTTGTTGCT
1 GCTGTTGCT
433038 GCTGTTGCT
1 GCTGTTGCT
433047 GCTGTTG
1 GCTGTTG
433054 TTGAGCCAAC
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 31 1.00
ACGTcount: A:0.00, C:0.21, G:0.35, T:0.44
Consensus pattern (9 bp):
GCTGTTGCT
Left flanking sequence: Indices 432511 -- 433010
ATCGAAGAGCGCATTCGTATGATGGCCGGTAGGGTTTTCACACCCGCGGGCGTTATGGTTGTCAA
GCGGGTTTTGCAAATGTAGATGCTCTCTTACGTTGCCTATTATCGTTGTTCAGGAGTTGGGAATA
TCCCATGAGTCTATTATGGGCCGTGCCCTGTGCCTAATATACAAAAAATCGATGGTTCACCGCTT
ACCCCCCATTAACTGTGATAACAATTGCGACGACGTCGACTGGGCACCACCGGTGGGGCTGTTGT
CAAACGTAGGCTGGGGGTAAACTTGGGGAGCCCCTTTACCGCCGGCAAACAAGCCGGGAGGAGGT
GGCGTCAGCGTCTGGGCGCGGTCGTTCATGCGCAACATGTTGACTTGAGGGGGAGGCTGTTTTTG
CGCCTGCTGTTGTAACTGCATCAACAACATTTGCTGTTGTTGAGGGTGCATCTTCTGTTGCTCCA
TTTGTAACTGTTGCAACTGCTGCTGCTGCAATGAGGTCTGTTGAC
Right flanking sequence: Indices 433054 -- 433553
TTGAGCCAACAACTGGGTGATCGGGTGGTTGGCGTAGGCCAAATGGTAGTTTTTGATCGGACGGA
ACAAAAAGCGTTCAATCACCACCCGCGCACGCTCAGCATCGTCGCCGGATGCCGTGGGTTTGGAG
CTATCAAACCCAAACATCGGTAATCTTGGAGTGTCCAGTTTGAATGTCACAGGCTCGGCAGTGCC
TTCGTGAAGAGCATGCAATTGATCGGCAGCATGGTCCAAAAAGTGGGCAGCCAGATCGTCGTCGA
TGTCAATGTCGTCCGGCAATAAGACCAGCTCCTTATTTCCACGTTTCGTACGCTGTTTGGGGGCC
TCGCGCTTTTGCTTGTCCTTAAAAATCTCCCCGAGAGTAGGGAAGGCTGCCAGGTTGGCAAGTGT
CAGATTCTCGGGAGCCGGCAGAGACGTGGCCAGCTGGGCGTCGCCTGCAGCCCAGTGTGCCGTCG
CGGGAAGGGCCACCTGGGGAGGAGGCAGCTGAGCCGGCTCCTCGT
Found at i:436217 original size:21 final size:21
Alignment explanation
Indices: 436161--436219 Score: 66
Period size: 21 Copynumber: 2.8 Consensus size: 21
436151 TGGGAGTAGT
436161 TCTGGCCCAGCGAGTAGTTGC
1 TCTGGCCCAGCGAGTAGTTGC
* * *
436182 TCTGTCCC-GAAGAGTAGTTGT
1 TCTGGCCCAG-CGAGTAGTTGC
*
436203 TTTGGCCCAGCGAGTAG
1 TCTGGCCCAGCGAGTAG
436220 CCACCTCTGC
Statistics
Matches: 30, Mismatches: 6, Indels: 4
0.75 0.15 0.10
Matches are distributed among these distances:
20 1 0.03
21 28 0.93
22 1 0.03
ACGTcount: A:0.17, C:0.24, G:0.32, T:0.27
Consensus pattern (21 bp):
TCTGGCCCAGCGAGTAGTTGC
Left flanking sequence: Indices 435661 -- 436160
GGGTGCACTCATCACCTCTGCTCCGCAACCTCCATATCCATGTAATGACCAAGGACTTCTACACC
CCATGTATGAAGAACAAGAAGCACTACAACTCGTTCACCACGCCGTTTTTCGTGCCCTTCCACAA
ATTGGCTCCACAGGCCAATGACGACAGTGACGACGAAGCGGGCTCTTCTCCGTCACCAGAGCCCG
AGTCGCTATTAAAAGGCAAATTGAGGTGTAGCTACTGCTTCACCAACTTTGACAATAGCTTTGCG
AGTTTGAAGAAGCACCTTCAAAAGGAGTACCAACGTAAATACGGTGACTTTGGAGTTGACCCAAC
CAAATTGGTAGCCAACGGTCGATAAGTTCCGATCTGTACATATTAGATTGACCCAAAAATAACTC
TATATTCATACAATACCATTATTTAACATCGACACATCACCGCTGCAGGTAGCGGTCATTGGAGT
AGCCCTGGGTGGGTCCCTGGTAGTTACTTTGGCCTTGGGAGTAGT
Right flanking sequence: Indices 436220 -- 436719
CCACCTCTGCCTCCGCCGTACCCGGGTCCACCTCCACGCCCACGCCCACGCCCACCGTAGCCTCC
ACGACCGCCTCTGTAGCCGCCACGGCCTCCGTAGCCGCCATCGTCACCAAAGCCACCATGGCCTC
CTTGGTACCCACCGCGGTTGTTGTAGCCTCCACGGCCTCCACGCCCGTTGTAGCCACCACGACCA
CCATAGTTGCCCTGAGTTCGGGCCTGCTGTTGGTGCTGCTGGTACTCATCGGTGTGGTGCTCCTT
CTGGGTGGACATGGCCCGGTACCCGCCACGATGCATCGAGTAAGTCATGAAAAACTGACTGCCTT
GGGGACCCATGTTGACGTAGTCATTAGGGGGTGGGCCCTGGAACCGCCCGCGGCCACGTTGGTTT
CTCTCCTGATACTTCACAGCATTGATGTCATCCTGATTAAGTGCGGGCGTGTGGCAAATGTATCC
CGTGAGCAACATTGACTTGCCAGGCTTCTTGGGGGGAAACCGGTA
Found at i:486531 original size:45 final size:45
Alignment explanation
Indices: 486461--486609 Score: 153
Period size: 45 Copynumber: 3.4 Consensus size: 45
486451 TCTGTCGTTG
* * * * *
486461 CGACCGTAGTTGTCGCGGCCACCACCGTAGCCACCCTGGTTACCA
1 CGACCATAGTCGTCACGGCCGCCACCGTAGCCGCCCTGGTTACCA
*
486506 CGACCATAGTCGTCACGGCCGCCACCGTAGCCGCCCTGGTTGCCA
1 CGACCATAGTCGTCACGGCCGCCACCGTAGCCGCCCTGGTTACCA
* * ** *
486551 CGGCCATAATCGT--C-G-CGACCACCAAAGCCGCCCTGGTTACCG
1 CGACCATAGTCGTCACGGCCG-CCACCGTAGCCGCCCTGGTTACCA
*
486593 CGACCGTAGTCGTCACG
1 CGACCATAGTCGTCACG
486610 TCTGTCATTA
Statistics
Matches: 85, Mismatches: 15, Indels: 8
0.79 0.14 0.07
Matches are distributed among these distances:
41 2 0.02
42 31 0.36
43 1 0.01
44 1 0.01
45 50 0.59
ACGTcount: A:0.18, C:0.40, G:0.26, T:0.16
Consensus pattern (45 bp):
CGACCATAGTCGTCACGGCCGCCACCGTAGCCGCCCTGGTTACCA
Left flanking sequence: Indices 485961 -- 486460
ATAGATCTCGCGAGGATGTACCTTGGGAGCGTTTGCAGCGGGTTGAATAACTTTAAACAACTTGG
TTTCAACTTCCACGAGGCTTGTGACCGGGCGGGGCACCAGCACCTCTTGCTTGGGATGAACCGCC
ATAGCAATTGAGGGGCCCTTGCGAGGAGCAACAACAGAGTCATTCAAACCAATTCTGATCATGAC
TAGTAGAAGATGCGAAAACCATTCGCATGGTTTAGCTAGTTATGTGTGTTCCCCTCCTTGTGGTT
GACCACAATCAATTTGCAGCCAAAATTCGCAGCCACTTTACATGCCGGAATGAAACAAGCTGTTG
CACAATACCACCGTAGACACAAACCTAGGTTCGCAAATCTCCGTAAATGAAACATGATTGATTGA
TCGGGAAATAAAGCTTGACAGCTCTATGCCCCGATATTTGGGATCTTTTTTCACGCAGTTATATG
TATAATTCGTTTCATTTCATTTCATATACTTAGTATCTGTCGTTG
Right flanking sequence: Indices 486610 -- 487109
TCTGTCATTACCATAGCCACCACTGTTGTAGTTGTCACGTCTGTCACCGCCGTGGTGACGGCCCT
CGTCACGACCGCCAAAGCCACCGTGGTCACCACGGCCGTAGTCGTCGCGTCTGTCGTCGCGTCTG
TCGCCGTAGCCACCGTGGCCACCTTGGCCACCCTGGCCGTACTTGTGCTCGTCTCTGCGGTCTTC
CCACGCGTCCTCAACCTTGTTAGCGGCAATGGCACCGCCAATGGCACCGACGATTTTGCCGAGAG
TACCGTGGCTCTGGCCACCGACCTTGTCACCGGCATAACCGCCGGCCAAGCCACCGCCAACGGTG
GCTAAGAAACCACGCTCACCATCCTGCTGCTGGCCACCCTGCTGGTTGGACTGTCTCGGGTTGTA
TTCACCTTGGTCACCGGAGGAGTAAAATTCGTTAGCAGACATAATTGAGCAGAAATCAAATAGCT
TTCACAACGTGTTATTTTTGCAATTTATACCCGTGGTGGCGACGA
Found at i:486732 original size:12 final size:12
Alignment explanation
Indices: 486715--486742 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
486705 CACGGCCGTA
486715 GTCGTCGCGTCT
1 GTCGTCGCGTCT
486727 GTCGTCGCGTCT
1 GTCGTCGCGTCT
486739 GTCG
1 GTCG
486743 CCGTAGCCAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.00, C:0.32, G:0.36, T:0.32
Consensus pattern (12 bp):
GTCGTCGCGTCT
Left flanking sequence: Indices 486215 -- 486714
GTGGTTGACCACAATCAATTTGCAGCCAAAATTCGCAGCCACTTTACATGCCGGAATGAAACAAG
CTGTTGCACAATACCACCGTAGACACAAACCTAGGTTCGCAAATCTCCGTAAATGAAACATGATT
GATTGATCGGGAAATAAAGCTTGACAGCTCTATGCCCCGATATTTGGGATCTTTTTTCACGCAGT
TATATGTATAATTCGTTTCATTTCATTTCATATACTTAGTATCTGTCGTTGCGACCGTAGTTGTC
GCGGCCACCACCGTAGCCACCCTGGTTACCACGACCATAGTCGTCACGGCCGCCACCGTAGCCGC
CCTGGTTGCCACGGCCATAATCGTCGCGACCACCAAAGCCGCCCTGGTTACCGCGACCGTAGTCG
TCACGTCTGTCATTACCATAGCCACCACTGTTGTAGTTGTCACGTCTGTCACCGCCGTGGTGACG
GCCCTCGTCACGACCGCCAAAGCCACCGTGGTCACCACGGCCGTA
Right flanking sequence: Indices 486743 -- 487242
CCGTAGCCACCGTGGCCACCTTGGCCACCCTGGCCGTACTTGTGCTCGTCTCTGCGGTCTTCCCA
CGCGTCCTCAACCTTGTTAGCGGCAATGGCACCGCCAATGGCACCGACGATTTTGCCGAGAGTAC
CGTGGCTCTGGCCACCGACCTTGTCACCGGCATAACCGCCGGCCAAGCCACCGCCAACGGTGGCT
AAGAAACCACGCTCACCATCCTGCTGCTGGCCACCCTGCTGGTTGGACTGTCTCGGGTTGTATTC
ACCTTGGTCACCGGAGGAGTAAAATTCGTTAGCAGACATAATTGAGCAGAAATCAAATAGCTTTC
ACAACGTGTTATTTTTGCAATTTATACCCGTGGTGGCGACGACCCCTGTCCCTTACGCGCAATTA
CGTCACTGGAAAGAATGCTTGGAATGTAAGTACGATGAAAATGCGTTAGTATTTCGACGAATCAT
GCATGGTTTTTCTTGGCACCGATGGTCTGGGGCATTTTACGGGCA
Found at i:502849 original size:11 final size:11
Alignment explanation
Indices: 502833--502873 Score: 57
Period size: 11 Copynumber: 3.8 Consensus size: 11
502823 CTATTATATA
502833 CCCTTCTACTT
1 CCCTTCTACTT
*
502844 CCCTTCCACTT
1 CCCTTCTACTT
*
502855 CCCTT-TATTT
1 CCCTTCTACTT
502865 CCCTTCTAC
1 CCCTTCTAC
502874 CTTCATCCCT
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
10 8 0.32
11 17 0.68
ACGTcount: A:0.10, C:0.46, G:0.00, T:0.44
Consensus pattern (11 bp):
CCCTTCTACTT
Left flanking sequence: Indices 502333 -- 502832
ATGAGTCGCCTTGATGGTGATGTGTGCGATCACGTTTAGTGTTATTGTGGTGTATAAACGTGTAC
GATCAAGTAGCTTTAGTGCTTGACTCTCTACGTGTGCCATCAAGTCGGTGTAGTGTTATTGAGGT
GGATACGCGTGTAAGATCAAGTAGCTAGTGCTATACTGGTACATCTATGCGTGTACGATCGGGGA
GCTTGGTGCTTTTCCGATACATCACTGCGTATACCGTCGATTCGCTTTGGAGTTATTTTGATGTA
TCTCCATCAAGTCGCTTTAGTGCTATTATGTCTTCGCTTCAGTGCTATTCTGAAGACTTTTCGCT
TCAGTGCTATTGATGTATCTTCGCTTTAGTGTTATTCGCATCACTTCCTGTACCGTACAGGCGGG
TATAATCTATCACATTATGTAGGTAAGATACTCACAACCCTTCTGTACACAACCCGCTTCGTGTA
CCATTGCCAGTACCGTTTCCCATGCCAGAATACCACTATTATATA
Right flanking sequence: Indices 502874 -- 503373
CTTCATCCCTCGCACTCACATCGTCTAATCTTCAACCCTACCAAACCTACCAAACCATCCTAAAT
AAACCCTATTTCGGAAACCACCCAAACACCACCAATTGCAACTACTCAATTGCACCCCAAACCGT
AAACTCCACACCACAACCAACCTCCATCCCCCCTTCCCCCTGCTTGCTCTTGCTCGTCCCAGCCG
CACTGTGCTCAATTTTTCTTTGTTTTCGCACATCCCATTCGAGATCATCAACATGTTCAACCAGC
TGCTGAGTGGCTTTGGCGGGTTTGGCCAGAGCAATGCCGGTTCGGGCAGTCCGTTTGGCGCGGCA
CTGAACACAAACAACACCAGCCCGTTCGGTGGAGGCAACACCGGCGGCTCGGGGTTGTTTGGCGC
CAGCAACACCCTGACGTTTGGCAACCCGTCAGCGAGCACAGGGGCGTTTGGCAGCGCTGGGGCCA
CCAACACCAGCCCGTTTGGCGCGGCCAACAACAACACCGCCTCCA
Found at i:503822 original size:24 final size:24
Alignment explanation
Indices: 503790--503841 Score: 95
Period size: 24 Copynumber: 2.2 Consensus size: 24
503780 CGCGTTTGGC
*
503790 GGCAACACCTCCACCAACGCGTTT
1 GGCAACACCTCCAACAACGCGTTT
503814 GGCAACACCTCCAACAACGCGTTT
1 GGCAACACCTCCAACAACGCGTTT
503838 GGCA
1 GGCA
503842 GCTCCAACTC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.27, C:0.38, G:0.19, T:0.15
Consensus pattern (24 bp):
GGCAACACCTCCAACAACGCGTTT
Left flanking sequence: Indices 503290 -- 503789
CGTCAGCGAGCACAGGGGCGTTTGGCAGCGCTGGGGCCACCAACACCAGCCCGTTTGGCGCGGCC
AACAACAACACCGCCTCCAACACCGGGTTTTTCGGCAACTCCAACGCAGGAACCGCCACCAGCCC
GTTTGGCGGCGCCAGCACGTTTGGAGCGGGCGCAGCCACCACCAACCAGGGCACAGCTGTCAAGC
CGTTTGCTCCGTTTGTGGAGAAGGAGGCCAACAACACCAGCACCACCTTTGAAAACATCTGTGCC
ATGCCCGAGTACAAAAACTTTTCGTTTGAGGAGTTGCGGTGCAAGGACTACGAGCAGGGCCGGCG
CTACGGCACGGGCAACACCGGTGGCTTTGGCGGGCTGAGCGGGTTTGGCGCCTCCACCACCTCGC
TGGGCTTCGGAGGGTCCAACGCCTTTGGCAGCACCACGGGCACCCTGGGGTTTGGCCAGCAGTCC
AACACCCTCAACAAGCCGTTTGGCCAGACGGGCAGCGCGTTTGGC
Right flanking sequence: Indices 503842 -- 504341
GCTCCAACTCGACGTTTGGCCAGAACAACAACCAGCAGTCCTCCGGGTTTGGCGGGTCGCTGGGG
GGCTTTGGCGCCTCCACCAACACCAACGCGTCGTCGGGCGGGTTTGGCAGTGCGTTTGGTGCCAG
CAAGCCCGCGTTTGGCGCCAGCTCGAGCGGGTTTGGCGCCTCCAACACCTCTGGGTTTGGCAGCG
GCAACAACGCGCTAGGCGGCAGCTCGGGCTTTGGCAACACCGCCAACAACGCGTTTGGCAGCACC
AACAGCGGCTCGGGCGGGTTGTTTGGCCAGAACAACACCGCGTCGACGGGCGGCGGCATCTTTGG
CAACAACAACACCAGCACGTTTGGCGCCAACAACAACACCCAGACCAACGCGTTTGGCGCCTCCA
ACACCGGGTCCGGCGGGTTTGGCGCGTCGGCGGGCGGGTTCGGCCAGAACTCGCTGAATGCATTT
GGCCAGAACAAGCCGTCGGGCGGGTTGTTTGGCAACAACACCAAC
Found at i:503846 original size:21 final size:22
Alignment explanation
Indices: 503794--503849 Score: 69
Period size: 24 Copynumber: 2.5 Consensus size: 22
503784 TTTGGCGGCA
*
503794 ACACCTCCACCAACGCGTTTGG
1 ACACCTCCAACAACGCGTTTGG
503816 CAACACCTCCAACAACGCGTTTGG
1 --ACACCTCCAACAACGCGTTTGG
*
503840 -CAGCTCCAAC
1 ACACCTCCAAC
503850 TCGACGTTTG
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
21 9 0.30
24 21 0.70
ACGTcount: A:0.27, C:0.41, G:0.16, T:0.16
Consensus pattern (22 bp):
ACACCTCCAACAACGCGTTTGG
Left flanking sequence: Indices 503294 -- 503793
AGCGAGCACAGGGGCGTTTGGCAGCGCTGGGGCCACCAACACCAGCCCGTTTGGCGCGGCCAACA
ACAACACCGCCTCCAACACCGGGTTTTTCGGCAACTCCAACGCAGGAACCGCCACCAGCCCGTTT
GGCGGCGCCAGCACGTTTGGAGCGGGCGCAGCCACCACCAACCAGGGCACAGCTGTCAAGCCGTT
TGCTCCGTTTGTGGAGAAGGAGGCCAACAACACCAGCACCACCTTTGAAAACATCTGTGCCATGC
CCGAGTACAAAAACTTTTCGTTTGAGGAGTTGCGGTGCAAGGACTACGAGCAGGGCCGGCGCTAC
GGCACGGGCAACACCGGTGGCTTTGGCGGGCTGAGCGGGTTTGGCGCCTCCACCACCTCGCTGGG
CTTCGGAGGGTCCAACGCCTTTGGCAGCACCACGGGCACCCTGGGGTTTGGCCAGCAGTCCAACA
CCCTCAACAAGCCGTTTGGCCAGACGGGCAGCGCGTTTGGCGGCA
Right flanking sequence: Indices 503850 -- 504349
TCGACGTTTGGCCAGAACAACAACCAGCAGTCCTCCGGGTTTGGCGGGTCGCTGGGGGGCTTTGG
CGCCTCCACCAACACCAACGCGTCGTCGGGCGGGTTTGGCAGTGCGTTTGGTGCCAGCAAGCCCG
CGTTTGGCGCCAGCTCGAGCGGGTTTGGCGCCTCCAACACCTCTGGGTTTGGCAGCGGCAACAAC
GCGCTAGGCGGCAGCTCGGGCTTTGGCAACACCGCCAACAACGCGTTTGGCAGCACCAACAGCGG
CTCGGGCGGGTTGTTTGGCCAGAACAACACCGCGTCGACGGGCGGCGGCATCTTTGGCAACAACA
ACACCAGCACGTTTGGCGCCAACAACAACACCCAGACCAACGCGTTTGGCGCCTCCAACACCGGG
TCCGGCGGGTTTGGCGCGTCGGCGGGCGGGTTCGGCCAGAACTCGCTGAATGCATTTGGCCAGAA
CAAGCCGTCGGGCGGGTTGTTTGGCAACAACACCAACACCAACAC
Found at i:504451 original size:48 final size:46
Alignment explanation
Indices: 504315--504461 Score: 168
Period size: 45 Copynumber: 3.3 Consensus size: 46
504305 CAAGCCGTCG
*
504315 GGCGGGTTGTTTGGCAACAACACCAACA---CCAAC-AC-TCTGGGC
1 GGCGGGTTGTTTGGCAACAACA-CAACACCGCCAACAACACCTGGGC
* *
504357 GGTGGGTTGTTTGGCAGC-AC-CAACACCGCCAACAACAACCTGGGC
1 GGCGGGTTGTTTGGCAACAACACAACACCGCCAACAAC-ACCTGGGC
*
504402 GGCGGGTTGTTTGGCAACAACAACAACACCGCCAACAACACCT--CC
1 GGCGGGTTGTTTGGCAACAAC-ACAACACCGCCAACAACACCTGGGC
504447 GGCGGGTTGTTTGGC
1 GGCGGGTTGTTTGGC
504462 CAGAACAAGC
Statistics
Matches: 90, Mismatches: 6, Indels: 15
0.81 0.05 0.14
Matches are distributed among these distances:
39 5 0.06
41 2 0.02
42 21 0.23
43 2 0.02
45 38 0.42
46 2 0.02
47 4 0.04
48 16 0.18
ACGTcount: A:0.24, C:0.31, G:0.28, T:0.17
Consensus pattern (46 bp):
GGCGGGTTGTTTGGCAACAACACAACACCGCCAACAACACCTGGGC
Left flanking sequence: Indices 503815 -- 504314
GCAACACCTCCAACAACGCGTTTGGCAGCTCCAACTCGACGTTTGGCCAGAACAACAACCAGCAG
TCCTCCGGGTTTGGCGGGTCGCTGGGGGGCTTTGGCGCCTCCACCAACACCAACGCGTCGTCGGG
CGGGTTTGGCAGTGCGTTTGGTGCCAGCAAGCCCGCGTTTGGCGCCAGCTCGAGCGGGTTTGGCG
CCTCCAACACCTCTGGGTTTGGCAGCGGCAACAACGCGCTAGGCGGCAGCTCGGGCTTTGGCAAC
ACCGCCAACAACGCGTTTGGCAGCACCAACAGCGGCTCGGGCGGGTTGTTTGGCCAGAACAACAC
CGCGTCGACGGGCGGCGGCATCTTTGGCAACAACAACACCAGCACGTTTGGCGCCAACAACAACA
CCCAGACCAACGCGTTTGGCGCCTCCAACACCGGGTCCGGCGGGTTTGGCGCGTCGGCGGGCGGG
TTCGGCCAGAACTCGCTGAATGCATTTGGCCAGAACAAGCCGTCG
Right flanking sequence: Indices 504462 -- 504961
CAGAACAAGCCTGCGGCGTCGGGCGGGTTGTTTGGCAGCAGCAACACCGCGTCCAACCTGGGCGG
AGGCTTGTTTGGTAACAACAACAACACCAACACCAACACCGGCGGCGGGTTGTTTGGCAACAACA
ACTCCAGCGGCACCAGCGGCGGGCTTTTCGGCGCCAACAACAACAACAACAACAACACCGCCAAC
ACCGCGTCCGGCGGGCTTTTCGGCGCCAAGCCGGCGGCGCCGTCGGGCGGCGGGCTTTTCGGCTC
CAACAACAACACCACCGCCACCACCGGCGGCGGGTTGTTTGGCAGCAACAACACCAACACCGCCA
CCAACACCGGCGGCGGCCTCTTTGGCGCGAAGCCGGCAGCGCTGGGCGGGTTGTTTGGCGGCCAG
CAGCAGCAGCAGCAACCGGCGGCCGCCAACACCGCGGCCCTCAACCAGCAGGGCCAGCAGGCGTT
GGTCAACATCAACCTGGCCAACCCCTACGGGTCCAACCCGTTGTT
Found at i:504544 original size:123 final size:125
Alignment explanation
Indices: 504360--504584 Score: 328
Period size: 123 Copynumber: 1.8 Consensus size: 125
504350 TCTGGGCGGT
* *
504360 GGGTTGTTTGGCAGCACCAACACCGCCAACAACAACCTGGGCGGCGGGTTGTTTGGCAACAACAA
1 GGGTTGTTTGGCAGCACCAACACCGCCAAC-ACAACCTGGGCGGAGGCTTGTTTGGCAACAACAA
** *
504425 CAACACCGCCAACAACACCTCCGGCGGGTTGTTTGGCCAGAACAAGCCTGCGGCGTCGGGC
65 CAACACCAACAACAACACCGCCGGCGGGTTGTTTGGCCAGAACAAGCCTGCGGCGTCGGGC
* ** *
504486 GGGTTGTTTGGCAGCAGCAACACCG-CGTC-CAACCTGGGCGGAGGCTTGTTTGGTAACAACAAC
1 GGGTTGTTTGGCAGCACCAACACCGCCAACACAACCTGGGCGGAGGCTTGTTTGGCAACAACAAC
* *
504549 AACACCAACACCAACACCGGCGGCGGGTTGTTTGGC
66 AACACCAACAACAACACCGCCGGCGGGTTGTTTGGC
504585 AACAACAACT
Statistics
Matches: 88, Mismatches: 11, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
123 62 0.70
125 2 0.02
126 24 0.27
ACGTcount: A:0.24, C:0.30, G:0.30, T:0.16
Consensus pattern (125 bp):
GGGTTGTTTGGCAGCACCAACACCGCCAACACAACCTGGGCGGAGGCTTGTTTGGCAACAACAAC
AACACCAACAACAACACCGCCGGCGGGTTGTTTGGCCAGAACAAGCCTGCGGCGTCGGGC
Left flanking sequence: Indices 503860 -- 504359
GCCAGAACAACAACCAGCAGTCCTCCGGGTTTGGCGGGTCGCTGGGGGGCTTTGGCGCCTCCACC
AACACCAACGCGTCGTCGGGCGGGTTTGGCAGTGCGTTTGGTGCCAGCAAGCCCGCGTTTGGCGC
CAGCTCGAGCGGGTTTGGCGCCTCCAACACCTCTGGGTTTGGCAGCGGCAACAACGCGCTAGGCG
GCAGCTCGGGCTTTGGCAACACCGCCAACAACGCGTTTGGCAGCACCAACAGCGGCTCGGGCGGG
TTGTTTGGCCAGAACAACACCGCGTCGACGGGCGGCGGCATCTTTGGCAACAACAACACCAGCAC
GTTTGGCGCCAACAACAACACCCAGACCAACGCGTTTGGCGCCTCCAACACCGGGTCCGGCGGGT
TTGGCGCGTCGGCGGGCGGGTTCGGCCAGAACTCGCTGAATGCATTTGGCCAGAACAAGCCGTCG
GGCGGGTTGTTTGGCAACAACACCAACACCAACACTCTGGGCGGT
Right flanking sequence: Indices 504585 -- 505084
AACAACAACTCCAGCGGCACCAGCGGCGGGCTTTTCGGCGCCAACAACAACAACAACAACAACAC
CGCCAACACCGCGTCCGGCGGGCTTTTCGGCGCCAAGCCGGCGGCGCCGTCGGGCGGCGGGCTTT
TCGGCTCCAACAACAACACCACCGCCACCACCGGCGGCGGGTTGTTTGGCAGCAACAACACCAAC
ACCGCCACCAACACCGGCGGCGGCCTCTTTGGCGCGAAGCCGGCAGCGCTGGGCGGGTTGTTTGG
CGGCCAGCAGCAGCAGCAGCAACCGGCGGCCGCCAACACCGCGGCCCTCAACCAGCAGGGCCAGC
AGGCGTTGGTCAACATCAACCTGGCCAACCCCTACGGGTCCAACCCGTTGTTTGTGCTGCTCCTG
GACGCAGCGGCCGCGCGCGCCGGCGGGCCCAAGGCTTCGTCCACGAAAAAGCCGGTGACGTTGCT
GGGCACCCGCAAGGTGGTGCCGCTCTTCCGGGCCACCGCGTCGGT
Found at i:504630 original size:123 final size:122
Alignment explanation
Indices: 504360--504630 Score: 278
Period size: 123 Copynumber: 2.2 Consensus size: 122
504350 TCTGGGCGGT
* ** * *
504360 GGGTTGTTTGGCAGCACCAACACCGCCAACAACAACCTGGGCGGCGGGTTGTTTGGCAACAACAA
1 GGGTTGTTCGGCAGCA-CAACACCG-CGTC--CAACCTGGGCGGAGGCTTGTTTGGCAACAACAA
** * * * * **
504425 CAACACCGCCAACAACACCTCCGGCGGGTTGTTTGGCCAGAACAAGCCTGCGGCGTCGGGC
62 CAACACCAACAACAACACCGCCGGCGGGTTGTTTGGCAACAACAAGCCAGCGGCACCGGGC
* *
504486 GGGTTGTTTGGCAGCAGCAACACCGCGTCCAACCTGGGCGGAGGCTTGTTTGGTAACAACAACAA
1 GGGTTGTTCGGCAGCA-CAACACCGCGTCCAACCTGGGCGGAGGCTTGTTTGGCAACAACAACAA
* * *
504551 CACCAACACCAACACCGGCGGCGGGTTGTTTGGCAACAACAACTCCAGCGGCACCAGCGGC
65 CACCAACAACAACACCGCCGGCGGGTTGTTTGGCAACAACAA-GCCAGCGGCACC-G-GGC
504612 GGGCTT-TTCGGC-GC-CAACA
1 GGG-TTGTTCGGCAGCACAACA
504631 ACAACAACAA
Statistics
Matches: 123, Mismatches: 18, Indels: 11
0.81 0.12 0.07
Matches are distributed among these distances:
123 73 0.59
124 8 0.07
125 5 0.04
126 35 0.28
127 2 0.02
ACGTcount: A:0.24, C:0.31, G:0.29, T:0.15
Consensus pattern (122 bp):
GGGTTGTTCGGCAGCACAACACCGCGTCCAACCTGGGCGGAGGCTTGTTTGGCAACAACAACAAC
ACCAACAACAACACCGCCGGCGGGTTGTTTGGCAACAACAAGCCAGCGGCACCGGGC
Left flanking sequence: Indices 503860 -- 504359
GCCAGAACAACAACCAGCAGTCCTCCGGGTTTGGCGGGTCGCTGGGGGGCTTTGGCGCCTCCACC
AACACCAACGCGTCGTCGGGCGGGTTTGGCAGTGCGTTTGGTGCCAGCAAGCCCGCGTTTGGCGC
CAGCTCGAGCGGGTTTGGCGCCTCCAACACCTCTGGGTTTGGCAGCGGCAACAACGCGCTAGGCG
GCAGCTCGGGCTTTGGCAACACCGCCAACAACGCGTTTGGCAGCACCAACAGCGGCTCGGGCGGG
TTGTTTGGCCAGAACAACACCGCGTCGACGGGCGGCGGCATCTTTGGCAACAACAACACCAGCAC
GTTTGGCGCCAACAACAACACCCAGACCAACGCGTTTGGCGCCTCCAACACCGGGTCCGGCGGGT
TTGGCGCGTCGGCGGGCGGGTTCGGCCAGAACTCGCTGAATGCATTTGGCCAGAACAAGCCGTCG
GGCGGGTTGTTTGGCAACAACACCAACACCAACACTCTGGGCGGT
Right flanking sequence: Indices 504631 -- 505130
ACAACAACAACAACAACACCGCCAACACCGCGTCCGGCGGGCTTTTCGGCGCCAAGCCGGCGGCG
CCGTCGGGCGGCGGGCTTTTCGGCTCCAACAACAACACCACCGCCACCACCGGCGGCGGGTTGTT
TGGCAGCAACAACACCAACACCGCCACCAACACCGGCGGCGGCCTCTTTGGCGCGAAGCCGGCAG
CGCTGGGCGGGTTGTTTGGCGGCCAGCAGCAGCAGCAGCAACCGGCGGCCGCCAACACCGCGGCC
CTCAACCAGCAGGGCCAGCAGGCGTTGGTCAACATCAACCTGGCCAACCCCTACGGGTCCAACCC
GTTGTTTGTGCTGCTCCTGGACGCAGCGGCCGCGCGCGCCGGCGGGCCCAAGGCTTCGTCCACGA
AAAAGCCGGTGACGTTGCTGGGCACCCGCAAGGTGGTGCCGCTCTTCCGGGCCACCGCGTCGGTG
CGGGTGGCCCCCGAGCCCACCGCCAAGCCGCAGGCAGGCGCGCTG
Found at i:506769 original size:6 final size:6
Alignment explanation
Indices: 506760--506836 Score: 75
Period size: 6 Copynumber: 12.8 Consensus size: 6
506750 GCAGCAGCAG
* * * * *
506760 CAGGCC CAGGCC CAGGCC CAGGCC CAAGCC CAAGCC CAGGCG CAAGCG
1 CAGGCC CAGGCC CAGGCC CAGGCC CAGGCC CAGGCC CAGGCC CAGGCC
* *
506808 CAAGCC CAGGCC CA-GCAA CAGGCC CAGGC
1 CAGGCC CAGGCC CAGGC-C CAGGCC CAGGC
506837 ACAACAACAG
Statistics
Matches: 61, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
5 2 0.03
6 57 0.93
7 2 0.03
ACGTcount: A:0.25, C:0.45, G:0.30, T:0.00
Consensus pattern (6 bp):
CAGGCC
Left flanking sequence: Indices 506260 -- 506759
TCGGAGGGTGGTATATTTTCTCGACGGGAGGAGGAGGGAGACCCCGTAGCCACCAGGGGCCCCGC
GGACCCAGCGCCGCCGGACACCGTGTAGACCCGCCATTGTGCCGCCCGGCCACCTGCGCGCACCC
CGTAGCCCGGCTGCCCGCACCACTCGTGCCCGTGCCCGTCGAGCCCGTGCCCGCCGCCCAGCCAT
ATTTTCTCACCTCCAAATCAGCAAAAAAAAATAAACAAAACACCATGAGCTACGAAGGCTACCCA
AAAGAGGACCAGGGCCAACACCCGCAGCGGTTCTACACACTGCCCATGGTGAACATGCAGCCCAG
CTACCAGCAGGGCCAGCAGTACTACCAGCAGAACCAGGGCCAGCTGGTGTACCCGCACCACATGT
ACCAGCAACCCGGCCAGCCGAGCCCGCAACAGGCCCAGCAGCTGCTGCAGTACAACGGCTACTAC
GACCAGCAGCCGAGCCAGCAGCAGTACCTCTACCAGCAGCAGCAG
Right flanking sequence: Indices 506837 -- 507336
ACAACAACAGGCCCAGACCACCAGCCCCAACGCCACCTACCAGTACCCGCAGTACCAGCTGCAGC
AGACCCAGCAGCAGCAGCTGGTGTACTACAACCCGCCGCCGCACTTGGCCCACCACTTGCCGCAC
TTGGCCGGGCAGTACGCCCCGATGGTGGCCCAGGCCCAGCCACAGCAGCCCCAGGTCAAGTACGA
GACGCCCCAGGCCCCGGCGGTGGCCCAGCCTCCACAGCAGCCGGCAGCCACGCCAGCGCCGCCCG
CGGCCGCGGCCCACGTCCCCACCCAAACACCGACCCCGGTGCAGCAGGCACCGCTGACCCTGCAC
ACCCAGCCGGTGATCTACCTGAACATCCCGCAGCGGTTGCAGCGGATCTTGCCCGCACCGCCGTT
GGCCCGCGCACCCACCCGGCCCGACGTCAACCTGGGGGTGTCGCAGAAGCGCGCCAAGCGCAAGT
CCAAGTTCTCCAAGCACCAGGACGACTTGATCGTGCTGTTGAAGA
Found at i:506781 original size:18 final size:18
Alignment explanation
Indices: 506760--506821 Score: 88
Period size: 18 Copynumber: 3.4 Consensus size: 18
506750 GCAGCAGCAG
* *
506760 CAGGCCCAGGCCCAGGCC
1 CAGGCCCAAGCCCAAGCC
506778 CAGGCCCAAGCCCAAGCC
1 CAGGCCCAAGCCCAAGCC
* *
506796 CAGGCGCAAGCGCAAGCC
1 CAGGCCCAAGCCCAAGCC
506814 CAGGCCCA
1 CAGGCCCA
506822 GCAACAGGCC
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 39 1.00
ACGTcount: A:0.24, C:0.47, G:0.29, T:0.00
Consensus pattern (18 bp):
CAGGCCCAAGCCCAAGCC
Left flanking sequence: Indices 506260 -- 506759
TCGGAGGGTGGTATATTTTCTCGACGGGAGGAGGAGGGAGACCCCGTAGCCACCAGGGGCCCCGC
GGACCCAGCGCCGCCGGACACCGTGTAGACCCGCCATTGTGCCGCCCGGCCACCTGCGCGCACCC
CGTAGCCCGGCTGCCCGCACCACTCGTGCCCGTGCCCGTCGAGCCCGTGCCCGCCGCCCAGCCAT
ATTTTCTCACCTCCAAATCAGCAAAAAAAAATAAACAAAACACCATGAGCTACGAAGGCTACCCA
AAAGAGGACCAGGGCCAACACCCGCAGCGGTTCTACACACTGCCCATGGTGAACATGCAGCCCAG
CTACCAGCAGGGCCAGCAGTACTACCAGCAGAACCAGGGCCAGCTGGTGTACCCGCACCACATGT
ACCAGCAACCCGGCCAGCCGAGCCCGCAACAGGCCCAGCAGCTGCTGCAGTACAACGGCTACTAC
GACCAGCAGCCGAGCCAGCAGCAGTACCTCTACCAGCAGCAGCAG
Right flanking sequence: Indices 506822 -- 507321
GCAACAGGCCCAGGCACAACAACAGGCCCAGACCACCAGCCCCAACGCCACCTACCAGTACCCGC
AGTACCAGCTGCAGCAGACCCAGCAGCAGCAGCTGGTGTACTACAACCCGCCGCCGCACTTGGCC
CACCACTTGCCGCACTTGGCCGGGCAGTACGCCCCGATGGTGGCCCAGGCCCAGCCACAGCAGCC
CCAGGTCAAGTACGAGACGCCCCAGGCCCCGGCGGTGGCCCAGCCTCCACAGCAGCCGGCAGCCA
CGCCAGCGCCGCCCGCGGCCGCGGCCCACGTCCCCACCCAAACACCGACCCCGGTGCAGCAGGCA
CCGCTGACCCTGCACACCCAGCCGGTGATCTACCTGAACATCCCGCAGCGGTTGCAGCGGATCTT
GCCCGCACCGCCGTTGGCCCGCGCACCCACCCGGCCCGACGTCAACCTGGGGGTGTCGCAGAAGC
GCGCCAAGCGCAAGTCCAAGTTCTCCAAGCACCAGGACGACTTGA
Found at i:506832 original size:18 final size:17
Alignment explanation
Indices: 506760--506852 Score: 69
Period size: 18 Copynumber: 5.2 Consensus size: 17
506750 GCAGCAGCAG
*
506760 CAGGCCCAGGCCCAGGCC
1 CAGGCCCA-GCACAGGCC
* *
506778 CAGGCCCAAGCCCAAGCC
1 CAGGCCC-AGCACAGGCC
* * *
506796 CAGGCGCAAGCGCAAGCC
1 CAGGC-CCAGCACAGGCC
506814 CAGGCCCAGCAACAGGCC
1 CAGGCCCAGC-ACAGGCC
* *
506832 CAGGCACAACAACAGGCC
1 CAGGCCCAGC-ACAGGCC
506850 CAG
1 CAG
506853 ACCACCAGCC
Statistics
Matches: 64, Mismatches: 8, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
17 4 0.06
18 58 0.91
19 2 0.03
ACGTcount: A:0.28, C:0.44, G:0.28, T:0.00
Consensus pattern (17 bp):
CAGGCCCAGCACAGGCC
Left flanking sequence: Indices 506260 -- 506759
TCGGAGGGTGGTATATTTTCTCGACGGGAGGAGGAGGGAGACCCCGTAGCCACCAGGGGCCCCGC
GGACCCAGCGCCGCCGGACACCGTGTAGACCCGCCATTGTGCCGCCCGGCCACCTGCGCGCACCC
CGTAGCCCGGCTGCCCGCACCACTCGTGCCCGTGCCCGTCGAGCCCGTGCCCGCCGCCCAGCCAT
ATTTTCTCACCTCCAAATCAGCAAAAAAAAATAAACAAAACACCATGAGCTACGAAGGCTACCCA
AAAGAGGACCAGGGCCAACACCCGCAGCGGTTCTACACACTGCCCATGGTGAACATGCAGCCCAG
CTACCAGCAGGGCCAGCAGTACTACCAGCAGAACCAGGGCCAGCTGGTGTACCCGCACCACATGT
ACCAGCAACCCGGCCAGCCGAGCCCGCAACAGGCCCAGCAGCTGCTGCAGTACAACGGCTACTAC
GACCAGCAGCCGAGCCAGCAGCAGTACCTCTACCAGCAGCAGCAG
Right flanking sequence: Indices 506853 -- 507352
ACCACCAGCCCCAACGCCACCTACCAGTACCCGCAGTACCAGCTGCAGCAGACCCAGCAGCAGCA
GCTGGTGTACTACAACCCGCCGCCGCACTTGGCCCACCACTTGCCGCACTTGGCCGGGCAGTACG
CCCCGATGGTGGCCCAGGCCCAGCCACAGCAGCCCCAGGTCAAGTACGAGACGCCCCAGGCCCCG
GCGGTGGCCCAGCCTCCACAGCAGCCGGCAGCCACGCCAGCGCCGCCCGCGGCCGCGGCCCACGT
CCCCACCCAAACACCGACCCCGGTGCAGCAGGCACCGCTGACCCTGCACACCCAGCCGGTGATCT
ACCTGAACATCCCGCAGCGGTTGCAGCGGATCTTGCCCGCACCGCCGTTGGCCCGCGCACCCACC
CGGCCCGACGTCAACCTGGGGGTGTCGCAGAAGCGCGCCAAGCGCAAGTCCAAGTTCTCCAAGCA
CCAGGACGACTTGATCGTGCTGTTGAAGAAAAAGGGCAAGCTGTG
Found at i:507874 original size:24 final size:24
Alignment explanation
Indices: 507847--507924 Score: 76
Period size: 24 Copynumber: 3.4 Consensus size: 24
507837 CTTCCCCAGT
507847 ACCAGCAGCAGCCGATGCAGCACC
1 ACCAGCAGCAGCCGATGCAGCACC
*
507871 ACCAGC--C-GCCGCA-GCAGCCCC
1 ACCAGCAGCAGCCG-ATGCAGCACC
* *
507892 ACCAGCAGCAGCAGATGC-CCTACC
1 ACCAGCAGCAGCCGATGCAGC-ACC
507916 ACCAGCAGC
1 ACCAGCAGC
507925 GCGCGGGGAT
Statistics
Matches: 44, Mismatches: 4, Indels: 12
0.73 0.07 0.20
Matches are distributed among these distances:
21 17 0.39
22 2 0.05
23 3 0.07
24 22 0.50
ACGTcount: A:0.27, C:0.46, G:0.23, T:0.04
Consensus pattern (24 bp):
ACCAGCAGCAGCCGATGCAGCACC
Left flanking sequence: Indices 507347 -- 507846
GCTGTGGGTGGAGATCGCCGAGATCTCGGGGGTGGGGCTGTACCTCGCGGCCCGCAACCGCTACC
AGGTGATTGTCGGCCAGCAGGGCAACAACAACCTGAGCCTGTGGAACGCGCAGGACAAGGTCAAC
TTGCAGAACCTCGTGGACGCGGGCGAGCTCGAAAAGTGGCGGTTCATCCTGTTGGAGCTCAACAA
GGCCACCAACAAGAACTTCAGCGACGTCGAGTGCCGCGAGCTCGTGCGGGTGATGTTCTGGCAGA
ACCCGCTGCTGTTCACCATCAACGAGGACACCATTCTCGAGTGCGAAAAGGAAAAGAAGATCACC
GAGAAGGCAATGGAGCACGCGCAGCAGAAGAAGAAGACCGACGGCGGCGACGTCAAGGAGGAGGC
CAAGGACGAGCAGCGGGGCGCGCCGGCGCCGGCCCCGCCCGCTCCGGTGGCTCCACAGACGATGC
AGCAGCAGCCGCCGCTCCAGCAGCAGCCGCTGTATCTTCCCCAGT
Right flanking sequence: Indices 507925 -- 508424
GCGCGGGGATCCCGCCGCAGCAGATGCCGTACTACAACAAGCCCTACTAATAGACCCGATGTATA
ACTATGTATTAATTAATCAGTAATAGGAGGGTGGGGGTAGAGGTGGTAGCGGGCTGGTGGTACAT
ACTAATGATAATGCTATGAACAATGAATGCTACAGTGATACTATGAACACGCAATGCTGTGGTGA
ATATGATGAATACTACAACGAATATAGCGTTGATACAACACGGTACCAGCTGGGGGGCCGCAGGC
GGCGCCCCCCAGACCCCCCACCGCTTTCTTGGTGGGTTGTGATACTATTTTGTTTGTATCATTTT
GATGATTTCTATCTTGGAGTCTATTTTGGAGTCTATTTTGGAGTCTATTTTGGAGTCTATTTTGG
AGTCTATTGTGGAATCTATTTTGGCATCTTTTGAATTCTATATTGGAGTCTTTTATAGTCTTTGG
AGTCGGTTCCAGCTGGGGGGCCGCAGGCGGCGCCCCCCCAAACCC
Found at i:507911 original size:21 final size:21
Alignment explanation
Indices: 507847--507924 Score: 68
Period size: 21 Copynumber: 3.6 Consensus size: 21
507837 CTTCCCCAGT
*
507847 ACCAGCAGCAGCCGATGCAGCACC
1 ACCAGCAGCAGCAGATGC--C-CC
* *
507871 ACCAGCCGCCGCAGCA-GCCCC
1 ACCAGCAGCAGCAG-ATGCCCC
*
507892 ACCAGCAGCAGCAGATGCCCT
1 ACCAGCAGCAGCAGATGCCCC
*
507913 ACCACCAGCAGC
1 ACCAGCAGCAGC
507925 GCGCGGGGAT
Statistics
Matches: 45, Mismatches: 7, Indels: 7
0.76 0.12 0.12
Matches are distributed among these distances:
20 1 0.02
21 29 0.64
22 1 0.02
24 13 0.29
25 1 0.02
ACGTcount: A:0.27, C:0.46, G:0.23, T:0.04
Consensus pattern (21 bp):
ACCAGCAGCAGCAGATGCCCC
Left flanking sequence: Indices 507347 -- 507846
GCTGTGGGTGGAGATCGCCGAGATCTCGGGGGTGGGGCTGTACCTCGCGGCCCGCAACCGCTACC
AGGTGATTGTCGGCCAGCAGGGCAACAACAACCTGAGCCTGTGGAACGCGCAGGACAAGGTCAAC
TTGCAGAACCTCGTGGACGCGGGCGAGCTCGAAAAGTGGCGGTTCATCCTGTTGGAGCTCAACAA
GGCCACCAACAAGAACTTCAGCGACGTCGAGTGCCGCGAGCTCGTGCGGGTGATGTTCTGGCAGA
ACCCGCTGCTGTTCACCATCAACGAGGACACCATTCTCGAGTGCGAAAAGGAAAAGAAGATCACC
GAGAAGGCAATGGAGCACGCGCAGCAGAAGAAGAAGACCGACGGCGGCGACGTCAAGGAGGAGGC
CAAGGACGAGCAGCGGGGCGCGCCGGCGCCGGCCCCGCCCGCTCCGGTGGCTCCACAGACGATGC
AGCAGCAGCCGCCGCTCCAGCAGCAGCCGCTGTATCTTCCCCAGT
Right flanking sequence: Indices 507925 -- 508424
GCGCGGGGATCCCGCCGCAGCAGATGCCGTACTACAACAAGCCCTACTAATAGACCCGATGTATA
ACTATGTATTAATTAATCAGTAATAGGAGGGTGGGGGTAGAGGTGGTAGCGGGCTGGTGGTACAT
ACTAATGATAATGCTATGAACAATGAATGCTACAGTGATACTATGAACACGCAATGCTGTGGTGA
ATATGATGAATACTACAACGAATATAGCGTTGATACAACACGGTACCAGCTGGGGGGCCGCAGGC
GGCGCCCCCCAGACCCCCCACCGCTTTCTTGGTGGGTTGTGATACTATTTTGTTTGTATCATTTT
GATGATTTCTATCTTGGAGTCTATTTTGGAGTCTATTTTGGAGTCTATTTTGGAGTCTATTTTGG
AGTCTATTGTGGAATCTATTTTGGCATCTTTTGAATTCTATATTGGAGTCTTTTATAGTCTTTGG
AGTCGGTTCCAGCTGGGGGGCCGCAGGCGGCGCCCCCCCAAACCC
Found at i:508343 original size:12 final size:12
Alignment explanation
Indices: 508257--508338 Score: 137
Period size: 12 Copynumber: 6.8 Consensus size: 12
508247 TTTGATGATT
*
508257 TCTATCTTGGAG
1 TCTATTTTGGAG
508269 TCTATTTTGGAG
1 TCTATTTTGGAG
508281 TCTATTTTGGAG
1 TCTATTTTGGAG
508293 TCTATTTTGGAG
1 TCTATTTTGGAG
508305 TCTATTTTGGAG
1 TCTATTTTGGAG
* *
508317 TCTATTGTGGAA
1 TCTATTTTGGAG
508329 TCTATTTTGG
1 TCTATTTTGG
508339 CATCTTTTGA
Statistics
Matches: 66, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 66 1.00
ACGTcount: A:0.17, C:0.10, G:0.24, T:0.49
Consensus pattern (12 bp):
TCTATTTTGGAG
Left flanking sequence: Indices 507757 -- 508256
CGCCGGCGCCGGCCCCGCCCGCTCCGGTGGCTCCACAGACGATGCAGCAGCAGCCGCCGCTCCAG
CAGCAGCCGCTGTATCTTCCCCAGTACCAGCAGCAGCCGATGCAGCACCACCAGCCGCCGCAGCA
GCCCCACCAGCAGCAGCAGATGCCCTACCACCAGCAGCGCGCGGGGATCCCGCCGCAGCAGATGC
CGTACTACAACAAGCCCTACTAATAGACCCGATGTATAACTATGTATTAATTAATCAGTAATAGG
AGGGTGGGGGTAGAGGTGGTAGCGGGCTGGTGGTACATACTAATGATAATGCTATGAACAATGAA
TGCTACAGTGATACTATGAACACGCAATGCTGTGGTGAATATGATGAATACTACAACGAATATAG
CGTTGATACAACACGGTACCAGCTGGGGGGCCGCAGGCGGCGCCCCCCAGACCCCCCACCGCTTT
CTTGGTGGGTTGTGATACTATTTTGTTTGTATCATTTTGATGATT
Right flanking sequence: Indices 508339 -- 508838
CATCTTTTGAATTCTATATTGGAGTCTTTTATAGTCTTTGGAGTCGGTTCCAGCTGGGGGGCCGC
AGGCGGCGCCCCCCCAAACCCCCCACCGCTTTCTTGGTGGGTTGTGATACGATTACGGTTGTATT
ATTTTGATAGTTCTATTTTGGAGTGTTTTGAAGTCTATTTTGAAGTCTTTCGAAGTCTATTTTGG
AGTCTGTTTGGGAGTCTATTTTGGAGTATCGGAGTCTTTCGGAGTATAGTGCAGTCTTTTGGAGT
CCATTGTGGAGCCTATTATGGTGTCTTTCGAAGTCTATTTTGAAGTCTATTTTGGTGCGTACTAT
TATGTTAATTTCTGTTTTGAAAAATACTTATTTATATTTGTATTTGATAATACTATAAATATTAT
GAACGCTACGGACCGTTGTCGTATAACCACATATTCCACTTGCATGTATGCTTTCTGGATAGACG
CTTGGTAGACGCCTTTCGACACCTCTTTTCGGACACTTTAGACCT
Found at i:508498 original size:24 final size:22
Alignment explanation
Indices: 508470--508560 Score: 110
Period size: 22 Copynumber: 4.0 Consensus size: 22
508460 GGTTGTATTA
*
508470 TTTTGATAGTTCTATTTTGGAGTG
1 TTTTGA-AG-TCTATTTTGGAGTC
*
508494 TTTTGAAGTCTATTTTGAAGTC
1 TTTTGAAGTCTATTTTGGAGTC
*
508516 TTTCGAAGTCTATTTTGGAGTC
1 TTTTGAAGTCTATTTTGGAGTC
*
508538 TGTTTGGGAGTCTATTTTGGAGT
1 T-TTT-GAAGTCTATTTTGGAGT
508561 ATCGGAGTCT
Statistics
Matches: 59, Mismatches: 6, Indels: 4
0.86 0.09 0.06
Matches are distributed among these distances:
22 33 0.56
23 4 0.07
24 22 0.37
ACGTcount: A:0.18, C:0.08, G:0.25, T:0.49
Consensus pattern (22 bp):
TTTTGAAGTCTATTTTGGAGTC
Left flanking sequence: Indices 507970 -- 508469
ACTAATAGACCCGATGTATAACTATGTATTAATTAATCAGTAATAGGAGGGTGGGGGTAGAGGTG
GTAGCGGGCTGGTGGTACATACTAATGATAATGCTATGAACAATGAATGCTACAGTGATACTATG
AACACGCAATGCTGTGGTGAATATGATGAATACTACAACGAATATAGCGTTGATACAACACGGTA
CCAGCTGGGGGGCCGCAGGCGGCGCCCCCCAGACCCCCCACCGCTTTCTTGGTGGGTTGTGATAC
TATTTTGTTTGTATCATTTTGATGATTTCTATCTTGGAGTCTATTTTGGAGTCTATTTTGGAGTC
TATTTTGGAGTCTATTTTGGAGTCTATTGTGGAATCTATTTTGGCATCTTTTGAATTCTATATTG
GAGTCTTTTATAGTCTTTGGAGTCGGTTCCAGCTGGGGGGCCGCAGGCGGCGCCCCCCCAAACCC
CCCACCGCTTTCTTGGTGGGTTGTGATACGATTACGGTTGTATTA
Right flanking sequence: Indices 508561 -- 509060
ATCGGAGTCTTTCGGAGTATAGTGCAGTCTTTTGGAGTCCATTGTGGAGCCTATTATGGTGTCTT
TCGAAGTCTATTTTGAAGTCTATTTTGGTGCGTACTATTATGTTAATTTCTGTTTTGAAAAATAC
TTATTTATATTTGTATTTGATAATACTATAAATATTATGAACGCTACGGACCGTTGTCGTATAAC
CACATATTCCACTTGCATGTATGCTTTCTGGATAGACGCTTGGTAGACGCCTTTCGACACCTCTT
TTCGGACACTTTAGACCTTTCTGAGACACCATCTTCTTAGACACCTTATCTAAGAAACCTTTTCT
TAGACATCTATTTTCTAATTCCATTGTGTCTGTTCACAGACGTTCTCTGCGTAAACAGAACCGTT
GCAACCATTCATAAACACACCGTTGCAACCATTCGTAAACACAACCGTTGCAACCATTCGTAACC
GTTGCAACCATCCATTGTGTAGGGTTACCCCACAATAATACTCGT
Found at i:508511 original size:12 final size:12
Alignment explanation
Indices: 508468--508556 Score: 69
Period size: 12 Copynumber: 7.6 Consensus size: 12
508458 ACGGTTGTAT
508468 TATTTTGATAGTTC
1 TATTTTGA-AG-TC
*
508482 TATTTTGGAG--
1 TATTTTGAAGTC
*
508492 TGTTTTGAAGTC
1 TATTTTGAAGTC
508504 TATTTTGAAGTC
1 TATTTTGAAGTC
*
508516 --TTTCGAAGTC
1 TATTTTGAAGTC
*
508526 TATTTTGGAGTC
1 TATTTTGAAGTC
* * *
508538 TGTTTGGGAGTC
1 TATTTTGAAGTC
508550 TATTTTG
1 TATTTTG
508557 GAGTATCGGA
Statistics
Matches: 60, Mismatches: 11, Indels: 10
0.74 0.14 0.12
Matches are distributed among these distances:
10 17 0.28
12 34 0.57
13 2 0.03
14 7 0.12
ACGTcount: A:0.18, C:0.08, G:0.24, T:0.51
Consensus pattern (12 bp):
TATTTTGAAGTC
Left flanking sequence: Indices 507968 -- 508467
CTACTAATAGACCCGATGTATAACTATGTATTAATTAATCAGTAATAGGAGGGTGGGGGTAGAGG
TGGTAGCGGGCTGGTGGTACATACTAATGATAATGCTATGAACAATGAATGCTACAGTGATACTA
TGAACACGCAATGCTGTGGTGAATATGATGAATACTACAACGAATATAGCGTTGATACAACACGG
TACCAGCTGGGGGGCCGCAGGCGGCGCCCCCCAGACCCCCCACCGCTTTCTTGGTGGGTTGTGAT
ACTATTTTGTTTGTATCATTTTGATGATTTCTATCTTGGAGTCTATTTTGGAGTCTATTTTGGAG
TCTATTTTGGAGTCTATTTTGGAGTCTATTGTGGAATCTATTTTGGCATCTTTTGAATTCTATAT
TGGAGTCTTTTATAGTCTTTGGAGTCGGTTCCAGCTGGGGGGCCGCAGGCGGCGCCCCCCCAAAC
CCCCCACCGCTTTCTTGGTGGGTTGTGATACGATTACGGTTGTAT
Right flanking sequence: Indices 508557 -- 509056
GAGTATCGGAGTCTTTCGGAGTATAGTGCAGTCTTTTGGAGTCCATTGTGGAGCCTATTATGGTG
TCTTTCGAAGTCTATTTTGAAGTCTATTTTGGTGCGTACTATTATGTTAATTTCTGTTTTGAAAA
ATACTTATTTATATTTGTATTTGATAATACTATAAATATTATGAACGCTACGGACCGTTGTCGTA
TAACCACATATTCCACTTGCATGTATGCTTTCTGGATAGACGCTTGGTAGACGCCTTTCGACACC
TCTTTTCGGACACTTTAGACCTTTCTGAGACACCATCTTCTTAGACACCTTATCTAAGAAACCTT
TTCTTAGACATCTATTTTCTAATTCCATTGTGTCTGTTCACAGACGTTCTCTGCGTAAACAGAAC
CGTTGCAACCATTCATAAACACACCGTTGCAACCATTCGTAAACACAACCGTTGCAACCATTCGT
AACCGTTGCAACCATCCATTGTGTAGGGTTACCCCACAATAATAC
Found at i:508559 original size:12 final size:12
Alignment explanation
Indices: 508480--508560 Score: 71
Period size: 12 Copynumber: 7.1 Consensus size: 12
508470 TTTTGATAGT
508480 TCTATTTTGGAG
1 TCTATTTTGGAG
* *
508492 --TGTTTTGAAG
1 TCTATTTTGGAG
*
508502 TCTATTTTGAAG
1 TCTATTTTGGAG
* *
508514 TC--TTTCGAAG
1 TCTATTTTGGAG
508524 TCTATTTTGGAG
1 TCTATTTTGGAG
* *
508536 TCTGTTTGGGAG
1 TCTATTTTGGAG
508548 TCTATTTTGGAG
1 TCTATTTTGGAG
508560 T
1 T
508561 ATCGGAGTCT
Statistics
Matches: 55, Mismatches: 10, Indels: 8
0.75 0.14 0.11
Matches are distributed among these distances:
10 17 0.31
12 38 0.69
ACGTcount: A:0.17, C:0.09, G:0.26, T:0.48
Consensus pattern (12 bp):
TCTATTTTGGAG
Left flanking sequence: Indices 507980 -- 508479
CCGATGTATAACTATGTATTAATTAATCAGTAATAGGAGGGTGGGGGTAGAGGTGGTAGCGGGCT
GGTGGTACATACTAATGATAATGCTATGAACAATGAATGCTACAGTGATACTATGAACACGCAAT
GCTGTGGTGAATATGATGAATACTACAACGAATATAGCGTTGATACAACACGGTACCAGCTGGGG
GGCCGCAGGCGGCGCCCCCCAGACCCCCCACCGCTTTCTTGGTGGGTTGTGATACTATTTTGTTT
GTATCATTTTGATGATTTCTATCTTGGAGTCTATTTTGGAGTCTATTTTGGAGTCTATTTTGGAG
TCTATTTTGGAGTCTATTGTGGAATCTATTTTGGCATCTTTTGAATTCTATATTGGAGTCTTTTA
TAGTCTTTGGAGTCGGTTCCAGCTGGGGGGCCGCAGGCGGCGCCCCCCCAAACCCCCCACCGCTT
TCTTGGTGGGTTGTGATACGATTACGGTTGTATTATTTTGATAGT
Right flanking sequence: Indices 508561 -- 509060
ATCGGAGTCTTTCGGAGTATAGTGCAGTCTTTTGGAGTCCATTGTGGAGCCTATTATGGTGTCTT
TCGAAGTCTATTTTGAAGTCTATTTTGGTGCGTACTATTATGTTAATTTCTGTTTTGAAAAATAC
TTATTTATATTTGTATTTGATAATACTATAAATATTATGAACGCTACGGACCGTTGTCGTATAAC
CACATATTCCACTTGCATGTATGCTTTCTGGATAGACGCTTGGTAGACGCCTTTCGACACCTCTT
TTCGGACACTTTAGACCTTTCTGAGACACCATCTTCTTAGACACCTTATCTAAGAAACCTTTTCT
TAGACATCTATTTTCTAATTCCATTGTGTCTGTTCACAGACGTTCTCTGCGTAAACAGAACCGTT
GCAACCATTCATAAACACACCGTTGCAACCATTCGTAAACACAACCGTTGCAACCATTCGTAACC
GTTGCAACCATCCATTGTGTAGGGTTACCCCACAATAATACTCGT
Found at i:508570 original size:44 final size:43
Alignment explanation
Indices: 508480--508570 Score: 103
Period size: 44 Copynumber: 2.1 Consensus size: 43
508470 TTTTGATAGT
* *
508480 TCTATTTTGGAGTGTTTTGAAGTCTATTTTGAAGTCTTTCGAAG
1 TCTATTTTGGAGTGTTTGGAAGTCTATTTTGAAG-CTATCGAAG
* * *
508524 TCTATTTTGGAGTCTGTTTGGGAGTCTATTTTGGAG-TATCGGAG
1 TCTATTTTGGAG--TGTTTGGAAGTCTATTTTGAAGCTATCGAAG
508568 TCT
1 TCT
508571 TTCGGAGTAT
Statistics
Matches: 40, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
44 21 0.52
46 19 0.47
ACGTcount: A:0.18, C:0.10, G:0.26, T:0.46
Consensus pattern (43 bp):
TCTATTTTGGAGTGTTTGGAAGTCTATTTTGAAGCTATCGAAG
Left flanking sequence: Indices 507980 -- 508479
CCGATGTATAACTATGTATTAATTAATCAGTAATAGGAGGGTGGGGGTAGAGGTGGTAGCGGGCT
GGTGGTACATACTAATGATAATGCTATGAACAATGAATGCTACAGTGATACTATGAACACGCAAT
GCTGTGGTGAATATGATGAATACTACAACGAATATAGCGTTGATACAACACGGTACCAGCTGGGG
GGCCGCAGGCGGCGCCCCCCAGACCCCCCACCGCTTTCTTGGTGGGTTGTGATACTATTTTGTTT
GTATCATTTTGATGATTTCTATCTTGGAGTCTATTTTGGAGTCTATTTTGGAGTCTATTTTGGAG
TCTATTTTGGAGTCTATTGTGGAATCTATTTTGGCATCTTTTGAATTCTATATTGGAGTCTTTTA
TAGTCTTTGGAGTCGGTTCCAGCTGGGGGGCCGCAGGCGGCGCCCCCCCAAACCCCCCACCGCTT
TCTTGGTGGGTTGTGATACGATTACGGTTGTATTATTTTGATAGT
Right flanking sequence: Indices 508571 -- 509070
TTCGGAGTATAGTGCAGTCTTTTGGAGTCCATTGTGGAGCCTATTATGGTGTCTTTCGAAGTCTA
TTTTGAAGTCTATTTTGGTGCGTACTATTATGTTAATTTCTGTTTTGAAAAATACTTATTTATAT
TTGTATTTGATAATACTATAAATATTATGAACGCTACGGACCGTTGTCGTATAACCACATATTCC
ACTTGCATGTATGCTTTCTGGATAGACGCTTGGTAGACGCCTTTCGACACCTCTTTTCGGACACT
TTAGACCTTTCTGAGACACCATCTTCTTAGACACCTTATCTAAGAAACCTTTTCTTAGACATCTA
TTTTCTAATTCCATTGTGTCTGTTCACAGACGTTCTCTGCGTAAACAGAACCGTTGCAACCATTC
ATAAACACACCGTTGCAACCATTCGTAAACACAACCGTTGCAACCATTCGTAACCGTTGCAACCA
TCCATTGTGTAGGGTTACCCCACAATAATACTCGTGGCTCTGATA
Found at i:508645 original size:12 final size:12
Alignment explanation
Indices: 508628--508652 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
508618 GGTGTCTTTC
508628 GAAGTCTATTTT
1 GAAGTCTATTTT
508640 GAAGTCTATTTT
1 GAAGTCTATTTT
508652 G
1 G
508653 GTGCGTACTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.08, G:0.20, T:0.48
Consensus pattern (12 bp):
GAAGTCTATTTT
Left flanking sequence: Indices 508128 -- 508627
AATACTACAACGAATATAGCGTTGATACAACACGGTACCAGCTGGGGGGCCGCAGGCGGCGCCCC
CCAGACCCCCCACCGCTTTCTTGGTGGGTTGTGATACTATTTTGTTTGTATCATTTTGATGATTT
CTATCTTGGAGTCTATTTTGGAGTCTATTTTGGAGTCTATTTTGGAGTCTATTTTGGAGTCTATT
GTGGAATCTATTTTGGCATCTTTTGAATTCTATATTGGAGTCTTTTATAGTCTTTGGAGTCGGTT
CCAGCTGGGGGGCCGCAGGCGGCGCCCCCCCAAACCCCCCACCGCTTTCTTGGTGGGTTGTGATA
CGATTACGGTTGTATTATTTTGATAGTTCTATTTTGGAGTGTTTTGAAGTCTATTTTGAAGTCTT
TCGAAGTCTATTTTGGAGTCTGTTTGGGAGTCTATTTTGGAGTATCGGAGTCTTTCGGAGTATAG
TGCAGTCTTTTGGAGTCCATTGTGGAGCCTATTATGGTGTCTTTC
Right flanking sequence: Indices 508653 -- 509152
GTGCGTACTATTATGTTAATTTCTGTTTTGAAAAATACTTATTTATATTTGTATTTGATAATACT
ATAAATATTATGAACGCTACGGACCGTTGTCGTATAACCACATATTCCACTTGCATGTATGCTTT
CTGGATAGACGCTTGGTAGACGCCTTTCGACACCTCTTTTCGGACACTTTAGACCTTTCTGAGAC
ACCATCTTCTTAGACACCTTATCTAAGAAACCTTTTCTTAGACATCTATTTTCTAATTCCATTGT
GTCTGTTCACAGACGTTCTCTGCGTAAACAGAACCGTTGCAACCATTCATAAACACACCGTTGCA
ACCATTCGTAAACACAACCGTTGCAACCATTCGTAACCGTTGCAACCATCCATTGTGTAGGGTTA
CCCCACAATAATACTCGTGGCTCTGATAATACTCGTGGCTCTAATACTCGTGGCTCCAATAATAC
TCGTGGCTCTGATAATACTCGTGGCTCTAATACTCGTGGCTCCAA
Found at i:508974 original size:24 final size:25
Alignment explanation
Indices: 508937--509009 Score: 121
Period size: 24 Copynumber: 3.0 Consensus size: 25
508927 GTTCTCTGCG
*
508937 TAAACAGAACCGTTGCAACCATTCA
1 TAAACACAACCGTTGCAACCATTCA
*
508962 TAAACAC-ACCGTTGCAACCATTCG
1 TAAACACAACCGTTGCAACCATTCA
508986 TAAACACAACCGTTGCAACCATTC
1 TAAACACAACCGTTGCAACCATTC
509010 GTAACCGTTG
Statistics
Matches: 45, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
24 23 0.51
25 22 0.49
ACGTcount: A:0.37, C:0.32, G:0.11, T:0.21
Consensus pattern (25 bp):
TAAACACAACCGTTGCAACCATTCA
Left flanking sequence: Indices 508437 -- 508936
TTGGTGGGTTGTGATACGATTACGGTTGTATTATTTTGATAGTTCTATTTTGGAGTGTTTTGAAG
TCTATTTTGAAGTCTTTCGAAGTCTATTTTGGAGTCTGTTTGGGAGTCTATTTTGGAGTATCGGA
GTCTTTCGGAGTATAGTGCAGTCTTTTGGAGTCCATTGTGGAGCCTATTATGGTGTCTTTCGAAG
TCTATTTTGAAGTCTATTTTGGTGCGTACTATTATGTTAATTTCTGTTTTGAAAAATACTTATTT
ATATTTGTATTTGATAATACTATAAATATTATGAACGCTACGGACCGTTGTCGTATAACCACATA
TTCCACTTGCATGTATGCTTTCTGGATAGACGCTTGGTAGACGCCTTTCGACACCTCTTTTCGGA
CACTTTAGACCTTTCTGAGACACCATCTTCTTAGACACCTTATCTAAGAAACCTTTTCTTAGACA
TCTATTTTCTAATTCCATTGTGTCTGTTCACAGACGTTCTCTGCG
Right flanking sequence: Indices 509010 -- 509509
GTAACCGTTGCAACCATCCATTGTGTAGGGTTACCCCACAATAATACTCGTGGCTCTGATAATAC
TCGTGGCTCTAATACTCGTGGCTCCAATAATACTCGTGGCTCTGATAATACTCGTGGCTCTAATA
CTCGTGGCTCCAATAATACTCGTGGCTCTAATAATACTCGTAGCACAGCTCTAATAATACTCGTA
GCACGGCTGTAATACTCGTAGCCCATGTCGCACCCATTATTTATTAACTACTCGCAATCTTCCGC
TCCACCACATCGATCTTGTCCTGGGGCAGCTGCTTCTTGTCGGTCCGCGACCCCACCCGGATGTC
CAGCTGGATGCGCACCACCCCCAGCTGGTGGAGTGCCTCGTGGAACCGCCCAATCAACTCCATCA
CCTCGCTCCACGGCCCCTCGATGGTGGTGCCCGCGGAGTGGAGGGTGGTGTGCAACGGCAGCTCG
CGCGCCATCCGGGTCACGAGCGTCACCTCGTCCAGCACCAGCGCC
Found at i:509003 original size:25 final size:25
Alignment explanation
Indices: 508935--509013 Score: 133
Period size: 25 Copynumber: 3.2 Consensus size: 25
508925 ACGTTCTCTG
*
508935 CGTAAACAGAACCGTTGCAACCATT
1 CGTAAACACAACCGTTGCAACCATT
*
508960 CATAAACAC-ACCGTTGCAACCATT
1 CGTAAACACAACCGTTGCAACCATT
508984 CGTAAACACAACCGTTGCAACCATT
1 CGTAAACACAACCGTTGCAACCATT
509009 CGTAA
1 CGTAA
509014 CCGTTGCAAC
Statistics
Matches: 50, Mismatches: 3, Indels: 2
0.91 0.05 0.04
Matches are distributed among these distances:
24 23 0.46
25 27 0.54
ACGTcount: A:0.37, C:0.30, G:0.13, T:0.20
Consensus pattern (25 bp):
CGTAAACACAACCGTTGCAACCATT
Left flanking sequence: Indices 508435 -- 508934
TCTTGGTGGGTTGTGATACGATTACGGTTGTATTATTTTGATAGTTCTATTTTGGAGTGTTTTGA
AGTCTATTTTGAAGTCTTTCGAAGTCTATTTTGGAGTCTGTTTGGGAGTCTATTTTGGAGTATCG
GAGTCTTTCGGAGTATAGTGCAGTCTTTTGGAGTCCATTGTGGAGCCTATTATGGTGTCTTTCGA
AGTCTATTTTGAAGTCTATTTTGGTGCGTACTATTATGTTAATTTCTGTTTTGAAAAATACTTAT
TTATATTTGTATTTGATAATACTATAAATATTATGAACGCTACGGACCGTTGTCGTATAACCACA
TATTCCACTTGCATGTATGCTTTCTGGATAGACGCTTGGTAGACGCCTTTCGACACCTCTTTTCG
GACACTTTAGACCTTTCTGAGACACCATCTTCTTAGACACCTTATCTAAGAAACCTTTTCTTAGA
CATCTATTTTCTAATTCCATTGTGTCTGTTCACAGACGTTCTCTG
Right flanking sequence: Indices 509014 -- 509513
CCGTTGCAACCATCCATTGTGTAGGGTTACCCCACAATAATACTCGTGGCTCTGATAATACTCGT
GGCTCTAATACTCGTGGCTCCAATAATACTCGTGGCTCTGATAATACTCGTGGCTCTAATACTCG
TGGCTCCAATAATACTCGTGGCTCTAATAATACTCGTAGCACAGCTCTAATAATACTCGTAGCAC
GGCTGTAATACTCGTAGCCCATGTCGCACCCATTATTTATTAACTACTCGCAATCTTCCGCTCCA
CCACATCGATCTTGTCCTGGGGCAGCTGCTTCTTGTCGGTCCGCGACCCCACCCGGATGTCCAGC
TGGATGCGCACCACCCCCAGCTGGTGGAGTGCCTCGTGGAACCGCCCAATCAACTCCATCACCTC
GCTCCACGGCCCCTCGATGGTGGTGCCCGCGGAGTGGAGGGTGGTGTGCAACGGCAGCTCGCGCG
CCATCCGGGTCACGAGCGTCACCTCGTCCAGCACCAGCGCCAGCC
Found at i:509073 original size:18 final size:18
Alignment explanation
Indices: 509049--509203 Score: 187
Period size: 18 Copynumber: 8.7 Consensus size: 18
509039 GTTACCCCAC
509049 AATAATACTCGTGGCTCT
1 AATAATACTCGTGGCTCT
*
509067 GATAATACTCGTGGCTC-
1 AATAATACTCGTGGCTCT
*
509084 --TAATACTCGTGGCTCC
1 AATAATACTCGTGGCTCT
509100 AATAATACTCGTGGCTCT
1 AATAATACTCGTGGCTCT
*
509118 GATAATACTCGTGGCTC-
1 AATAATACTCGTGGCTCT
*
509135 --TAATACTCGTGGCTCC
1 AATAATACTCGTGGCTCT
509151 AATAATACTCGTGGCTCT
1 AATAATACTCGTGGCTCT
509169 AATAATACTCGTAGCACAGCTCT
1 AATAATACTCGT-G----GCTCT
509192 AATAATACTCGT
1 AATAATACTCGT
509204 AGCACGGCTG
Statistics
Matches: 122, Mismatches: 4, Indels: 17
0.85 0.03 0.12
Matches are distributed among these distances:
15 30 0.25
18 74 0.61
19 1 0.01
23 17 0.14
ACGTcount: A:0.27, C:0.25, G:0.17, T:0.31
Consensus pattern (18 bp):
AATAATACTCGTGGCTCT
Left flanking sequence: Indices 508549 -- 509048
CTATTTTGGAGTATCGGAGTCTTTCGGAGTATAGTGCAGTCTTTTGGAGTCCATTGTGGAGCCTA
TTATGGTGTCTTTCGAAGTCTATTTTGAAGTCTATTTTGGTGCGTACTATTATGTTAATTTCTGT
TTTGAAAAATACTTATTTATATTTGTATTTGATAATACTATAAATATTATGAACGCTACGGACCG
TTGTCGTATAACCACATATTCCACTTGCATGTATGCTTTCTGGATAGACGCTTGGTAGACGCCTT
TCGACACCTCTTTTCGGACACTTTAGACCTTTCTGAGACACCATCTTCTTAGACACCTTATCTAA
GAAACCTTTTCTTAGACATCTATTTTCTAATTCCATTGTGTCTGTTCACAGACGTTCTCTGCGTA
AACAGAACCGTTGCAACCATTCATAAACACACCGTTGCAACCATTCGTAAACACAACCGTTGCAA
CCATTCGTAACCGTTGCAACCATCCATTGTGTAGGGTTACCCCAC
Right flanking sequence: Indices 509204 -- 509703
AGCACGGCTGTAATACTCGTAGCCCATGTCGCACCCATTATTTATTAACTACTCGCAATCTTCCG
CTCCACCACATCGATCTTGTCCTGGGGCAGCTGCTTCTTGTCGGTCCGCGACCCCACCCGGATGT
CCAGCTGGATGCGCACCACCCCCAGCTGGTGGAGTGCCTCGTGGAACCGCCCAATCAACTCCATC
ACCTCGCTCCACGGCCCCTCGATGGTGGTGCCCGCGGAGTGGAGGGTGGTGTGCAACGGCAGCTC
GCGCGCCATCCGGGTCACGAGCGTCACCTCGTCCAGCACCAGCGCCAGCCCGGTGCCAATGGGGA
TAATACAGACGTCAGCAAGACAGTGGAGATCAACCATGGTCAGATGTGGATTTTGCCGCGCGTAA
ATAATACTGTATGGTCGACATATAGGCGTGGACGCAACCATACCCGGACAATTAGATCCATCAAC
AGCACATCAACAGCACACGGTGCATCAACCCACTTGCCACCACTA
Found at i:509093 original size:33 final size:34
Alignment explanation
Indices: 509050--509180 Score: 180
Period size: 33 Copynumber: 3.9 Consensus size: 34
509040 TTACCCCACA
*
509050 ATAATACTCGTGGCTCTGATAATACTCGTGGCTC
1 ATAATACTCGTGGCTCTAATAATACTCGTGGCTC
*
509084 -TAATACTCGTGGCTCCAATAATACTCGTGGCTC
1 ATAATACTCGTGGCTCTAATAATACTCGTGGCTC
509117 TGATAATACTCGTGGCTC---TAATACTCGTGGCTCC
1 --ATAATACTCGTGGCTCTAATAATACTCGTGGCT-C
509151 AATAATACTCGTGGCTCTAATAATACTCGT
1 -ATAATACTCGTGGCTCTAATAATACTCGT
509181 AGCACAGCTC
Statistics
Matches: 87, Mismatches: 3, Indels: 12
0.85 0.03 0.12
Matches are distributed among these distances:
33 61 0.70
34 1 0.01
36 25 0.29
ACGTcount: A:0.25, C:0.24, G:0.18, T:0.32
Consensus pattern (34 bp):
ATAATACTCGTGGCTCTAATAATACTCGTGGCTC
Left flanking sequence: Indices 508550 -- 509049
TATTTTGGAGTATCGGAGTCTTTCGGAGTATAGTGCAGTCTTTTGGAGTCCATTGTGGAGCCTAT
TATGGTGTCTTTCGAAGTCTATTTTGAAGTCTATTTTGGTGCGTACTATTATGTTAATTTCTGTT
TTGAAAAATACTTATTTATATTTGTATTTGATAATACTATAAATATTATGAACGCTACGGACCGT
TGTCGTATAACCACATATTCCACTTGCATGTATGCTTTCTGGATAGACGCTTGGTAGACGCCTTT
CGACACCTCTTTTCGGACACTTTAGACCTTTCTGAGACACCATCTTCTTAGACACCTTATCTAAG
AAACCTTTTCTTAGACATCTATTTTCTAATTCCATTGTGTCTGTTCACAGACGTTCTCTGCGTAA
ACAGAACCGTTGCAACCATTCATAAACACACCGTTGCAACCATTCGTAAACACAACCGTTGCAAC
CATTCGTAACCGTTGCAACCATCCATTGTGTAGGGTTACCCCACA
Right flanking sequence: Indices 509181 -- 509680
AGCACAGCTCTAATAATACTCGTAGCACGGCTGTAATACTCGTAGCCCATGTCGCACCCATTATT
TATTAACTACTCGCAATCTTCCGCTCCACCACATCGATCTTGTCCTGGGGCAGCTGCTTCTTGTC
GGTCCGCGACCCCACCCGGATGTCCAGCTGGATGCGCACCACCCCCAGCTGGTGGAGTGCCTCGT
GGAACCGCCCAATCAACTCCATCACCTCGCTCCACGGCCCCTCGATGGTGGTGCCCGCGGAGTGG
AGGGTGGTGTGCAACGGCAGCTCGCGCGCCATCCGGGTCACGAGCGTCACCTCGTCCAGCACCAG
CGCCAGCCCGGTGCCAATGGGGATAATACAGACGTCAGCAAGACAGTGGAGATCAACCATGGTCA
GATGTGGATTTTGCCGCGCGTAAATAATACTGTATGGTCGACATATAGGCGTGGACGCAACCATA
CCCGGACAATTAGATCCATCAACAGCACATCAACAGCACACGGTG
Found at i:509124 original size:51 final size:51
Alignment explanation
Indices: 509048--509180 Score: 257
Period size: 51 Copynumber: 2.6 Consensus size: 51
509038 GGTTACCCCA
509048 CAATAATACTCGTGGCTCTGATAATACTCGTGGCTCTAATACTCGTGGCTC
1 CAATAATACTCGTGGCTCTGATAATACTCGTGGCTCTAATACTCGTGGCTC
509099 CAATAATACTCGTGGCTCTGATAATACTCGTGGCTCTAATACTCGTGGCTC
1 CAATAATACTCGTGGCTCTGATAATACTCGTGGCTCTAATACTCGTGGCTC
*
509150 CAATAATACTCGTGGCTCTAATAATACTCGT
1 CAATAATACTCGTGGCTCTGATAATACTCGT
509181 AGCACAGCTC
Statistics
Matches: 81, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
51 81 1.00
ACGTcount: A:0.26, C:0.25, G:0.18, T:0.32
Consensus pattern (51 bp):
CAATAATACTCGTGGCTCTGATAATACTCGTGGCTCTAATACTCGTGGCTC
Left flanking sequence: Indices 508548 -- 509047
TCTATTTTGGAGTATCGGAGTCTTTCGGAGTATAGTGCAGTCTTTTGGAGTCCATTGTGGAGCCT
ATTATGGTGTCTTTCGAAGTCTATTTTGAAGTCTATTTTGGTGCGTACTATTATGTTAATTTCTG
TTTTGAAAAATACTTATTTATATTTGTATTTGATAATACTATAAATATTATGAACGCTACGGACC
GTTGTCGTATAACCACATATTCCACTTGCATGTATGCTTTCTGGATAGACGCTTGGTAGACGCCT
TTCGACACCTCTTTTCGGACACTTTAGACCTTTCTGAGACACCATCTTCTTAGACACCTTATCTA
AGAAACCTTTTCTTAGACATCTATTTTCTAATTCCATTGTGTCTGTTCACAGACGTTCTCTGCGT
AAACAGAACCGTTGCAACCATTCATAAACACACCGTTGCAACCATTCGTAAACACAACCGTTGCA
ACCATTCGTAACCGTTGCAACCATCCATTGTGTAGGGTTACCCCA
Right flanking sequence: Indices 509181 -- 509680
AGCACAGCTCTAATAATACTCGTAGCACGGCTGTAATACTCGTAGCCCATGTCGCACCCATTATT
TATTAACTACTCGCAATCTTCCGCTCCACCACATCGATCTTGTCCTGGGGCAGCTGCTTCTTGTC
GGTCCGCGACCCCACCCGGATGTCCAGCTGGATGCGCACCACCCCCAGCTGGTGGAGTGCCTCGT
GGAACCGCCCAATCAACTCCATCACCTCGCTCCACGGCCCCTCGATGGTGGTGCCCGCGGAGTGG
AGGGTGGTGTGCAACGGCAGCTCGCGCGCCATCCGGGTCACGAGCGTCACCTCGTCCAGCACCAG
CGCCAGCCCGGTGCCAATGGGGATAATACAGACGTCAGCAAGACAGTGGAGATCAACCATGGTCA
GATGTGGATTTTGCCGCGCGTAAATAATACTGTATGGTCGACATATAGGCGTGGACGCAACCATA
CCCGGACAATTAGATCCATCAACAGCACATCAACAGCACACGGTG
Found at i:509190 original size:23 final size:23
Alignment explanation
Indices: 509164--509218 Score: 92
Period size: 23 Copynumber: 2.4 Consensus size: 23
509154 AATACTCGTG
509164 GCTCTAATAATACTCGTAGCACA
1 GCTCTAATAATACTCGTAGCACA
*
509187 GCTCTAATAATACTCGTAGCACG
1 GCTCTAATAATACTCGTAGCACA
*
509210 GCTGTAATA
1 GCTCTAATA
509219 CTCGTAGCCC
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
23 30 1.00
ACGTcount: A:0.33, C:0.24, G:0.16, T:0.27
Consensus pattern (23 bp):
GCTCTAATAATACTCGTAGCACA
Left flanking sequence: Indices 508664 -- 509163
TATGTTAATTTCTGTTTTGAAAAATACTTATTTATATTTGTATTTGATAATACTATAAATATTAT
GAACGCTACGGACCGTTGTCGTATAACCACATATTCCACTTGCATGTATGCTTTCTGGATAGACG
CTTGGTAGACGCCTTTCGACACCTCTTTTCGGACACTTTAGACCTTTCTGAGACACCATCTTCTT
AGACACCTTATCTAAGAAACCTTTTCTTAGACATCTATTTTCTAATTCCATTGTGTCTGTTCACA
GACGTTCTCTGCGTAAACAGAACCGTTGCAACCATTCATAAACACACCGTTGCAACCATTCGTAA
ACACAACCGTTGCAACCATTCGTAACCGTTGCAACCATCCATTGTGTAGGGTTACCCCACAATAA
TACTCGTGGCTCTGATAATACTCGTGGCTCTAATACTCGTGGCTCCAATAATACTCGTGGCTCTG
ATAATACTCGTGGCTCTAATACTCGTGGCTCCAATAATACTCGTG
Right flanking sequence: Indices 509219 -- 509718
CTCGTAGCCCATGTCGCACCCATTATTTATTAACTACTCGCAATCTTCCGCTCCACCACATCGAT
CTTGTCCTGGGGCAGCTGCTTCTTGTCGGTCCGCGACCCCACCCGGATGTCCAGCTGGATGCGCA
CCACCCCCAGCTGGTGGAGTGCCTCGTGGAACCGCCCAATCAACTCCATCACCTCGCTCCACGGC
CCCTCGATGGTGGTGCCCGCGGAGTGGAGGGTGGTGTGCAACGGCAGCTCGCGCGCCATCCGGGT
CACGAGCGTCACCTCGTCCAGCACCAGCGCCAGCCCGGTGCCAATGGGGATAATACAGACGTCAG
CAAGACAGTGGAGATCAACCATGGTCAGATGTGGATTTTGCCGCGCGTAAATAATACTGTATGGT
CGACATATAGGCGTGGACGCAACCATACCCGGACAATTAGATCCATCAACAGCACATCAACAGCA
CACGGTGCATCAACCCACTTGCCACCACTAGCCACCCATCGACCA
Found at i:509219 original size:20 final size:23
Alignment explanation
Indices: 509167--509226 Score: 81
Period size: 23 Copynumber: 2.7 Consensus size: 23
509157 ACTCGTGGCT
*
509167 CTAATAATACTCGTAGCACAGCT
1 CTAATAATACTCGTAGCACAGCG
509190 CTAATAATACTCGTAGCAC-G-G
1 CTAATAATACTCGTAGCACAGCG
*
509211 CT-GTAATACTCGTAGC
1 CTAATAATACTCGTAGC
509227 CCATGTCGCA
Statistics
Matches: 35, Mismatches: 2, Indels: 3
0.88 0.05 0.08
Matches are distributed among these distances:
20 13 0.37
21 2 0.06
22 1 0.03
23 19 0.54
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.27
Consensus pattern (23 bp):
CTAATAATACTCGTAGCACAGCG
Left flanking sequence: Indices 508667 -- 509166
GTTAATTTCTGTTTTGAAAAATACTTATTTATATTTGTATTTGATAATACTATAAATATTATGAA
CGCTACGGACCGTTGTCGTATAACCACATATTCCACTTGCATGTATGCTTTCTGGATAGACGCTT
GGTAGACGCCTTTCGACACCTCTTTTCGGACACTTTAGACCTTTCTGAGACACCATCTTCTTAGA
CACCTTATCTAAGAAACCTTTTCTTAGACATCTATTTTCTAATTCCATTGTGTCTGTTCACAGAC
GTTCTCTGCGTAAACAGAACCGTTGCAACCATTCATAAACACACCGTTGCAACCATTCGTAAACA
CAACCGTTGCAACCATTCGTAACCGTTGCAACCATCCATTGTGTAGGGTTACCCCACAATAATAC
TCGTGGCTCTGATAATACTCGTGGCTCTAATACTCGTGGCTCCAATAATACTCGTGGCTCTGATA
ATACTCGTGGCTCTAATACTCGTGGCTCCAATAATACTCGTGGCT
Right flanking sequence: Indices 509227 -- 509726
CCATGTCGCACCCATTATTTATTAACTACTCGCAATCTTCCGCTCCACCACATCGATCTTGTCCT
GGGGCAGCTGCTTCTTGTCGGTCCGCGACCCCACCCGGATGTCCAGCTGGATGCGCACCACCCCC
AGCTGGTGGAGTGCCTCGTGGAACCGCCCAATCAACTCCATCACCTCGCTCCACGGCCCCTCGAT
GGTGGTGCCCGCGGAGTGGAGGGTGGTGTGCAACGGCAGCTCGCGCGCCATCCGGGTCACGAGCG
TCACCTCGTCCAGCACCAGCGCCAGCCCGGTGCCAATGGGGATAATACAGACGTCAGCAAGACAG
TGGAGATCAACCATGGTCAGATGTGGATTTTGCCGCGCGTAAATAATACTGTATGGTCGACATAT
AGGCGTGGACGCAACCATACCCGGACAATTAGATCCATCAACAGCACATCAACAGCACACGGTGC
ATCAACCCACTTGCCACCACTAGCCACCCATCGACCATGACCGAC
Found at i:511078 original size:12 final size:12
Alignment explanation
Indices: 511037--511071 Score: 61
Period size: 12 Copynumber: 2.9 Consensus size: 12
511027 AGATAGGGGC
511037 CAAGTTGGAGGA
1 CAAGTTGGAGGA
*
511049 CAAGTAGGAGGA
1 CAAGTTGGAGGA
511061 CAAGTTGGAGG
1 CAAGTTGGAGG
511072 GCGAGTTTGT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.34, C:0.09, G:0.43, T:0.14
Consensus pattern (12 bp):
CAAGTTGGAGGA
Left flanking sequence: Indices 510537 -- 511036
TATGACGTAACCGAGATAATATGGTTATGATCGAGGTGGACGAGGTCGGGATCGTACACGAAAAT
ATCGGGGAATCTCCCGTCAAAAATAAACACTGAGTGGTTTACGACGGTTTCGTAGGGGCCTCCTG
CAGATGCGAGGGGTCCATCTCGGGAACGCGATCGTGCCCGTCGTAGTGGGGTGTCGGGAACCATC
TGGAGGTGGTTCACCGCAGGATACCAAGATCGATTCCGACCGGGACTGGCGCGATGCAGGGACGA
ACTTGCCCCGCATGAATATTTTCCCACGGAGGCGTCGGGGAAAGGTTAAACGGGAGAAGACGCCG
ACGGCGGTGGTGGGCGGGAAAATAGCACAAGGCGGAGGCATCGGGCATCTGGGTGCGGCCAGGGG
GCGTTTACCTGGGTGGAGGTTTGACAGGACAGGGCCTAGGCGGTGGATTGGCTGCAAACTGCCAC
AAAGTGGGATTGCGTCATGGACGGCCAGGAATGCGAGATAGGGGC
Right flanking sequence: Indices 511072 -- 511571
GCGAGTTTGTAGGGAGACTTCTAGCATTGGGGAAAGAAGAGGAAGGGTGGTTGGTCTTTAATTAT
CAGACGCTCGATTAGCGACGGGTGGCTCTGACGTATGGTTTACAGTATGCACCCTGCGAACTAGC
CGCCAACTACGCAGTCACCATAGTCGCCACTCAGACAGTACCCAGACCCACCAATCAGTCAGTAC
CGAGACCCACCAATCAGCTACAGACCCAGACTCAGATCCAGACCCACACCACTGTAACTACACTC
CACCGTAGCTACACATCGTTGTAGCTACACACCGCTGTAACTACACACCACTGTAACTACACACC
ACCGTAGCTAAAAATCACCCAATCTCCATCCCCACCACCCAGTCTCCATCCCCGCCACCCTCTCC
ACCTCAACCACCCATCCATCCCCACCACTCATCCACAATCTCCACCCCTCCACCGTCACCACCAC
TCATCCACCATCTCCACTTATCACCATCCCTACGCTCTCCACACC
Found at i:511259 original size:24 final size:24
Alignment explanation
Indices: 511232--511297 Score: 89
Period size: 24 Copynumber: 2.7 Consensus size: 24
511222 TAGTCGCCAC
511232 TCAGACAGTACCCAGACCCACCAA
1 TCAGACAGTACCCAGACCCACCAA
* *
511256 TCAGTCAGTACCGAGACCCACCAA
1 TCAGACAGTACCCAGACCCACCAA
511280 TCAGCTACAG-ACCCAGAC
1 TCAG--ACAGTACCCAGAC
511298 TCAGATCCAG
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
24 26 0.72
25 7 0.19
26 3 0.08
ACGTcount: A:0.35, C:0.39, G:0.15, T:0.11
Consensus pattern (24 bp):
TCAGACAGTACCCAGACCCACCAA
Left flanking sequence: Indices 510732 -- 511231
TGGAGGTGGTTCACCGCAGGATACCAAGATCGATTCCGACCGGGACTGGCGCGATGCAGGGACGA
ACTTGCCCCGCATGAATATTTTCCCACGGAGGCGTCGGGGAAAGGTTAAACGGGAGAAGACGCCG
ACGGCGGTGGTGGGCGGGAAAATAGCACAAGGCGGAGGCATCGGGCATCTGGGTGCGGCCAGGGG
GCGTTTACCTGGGTGGAGGTTTGACAGGACAGGGCCTAGGCGGTGGATTGGCTGCAAACTGCCAC
AAAGTGGGATTGCGTCATGGACGGCCAGGAATGCGAGATAGGGGCCAAGTTGGAGGACAAGTAGG
AGGACAAGTTGGAGGGCGAGTTTGTAGGGAGACTTCTAGCATTGGGGAAAGAAGAGGAAGGGTGG
TTGGTCTTTAATTATCAGACGCTCGATTAGCGACGGGTGGCTCTGACGTATGGTTTACAGTATGC
ACCCTGCGAACTAGCCGCCAACTACGCAGTCACCATAGTCGCCAC
Right flanking sequence: Indices 511298 -- 511797
TCAGATCCAGACCCACACCACTGTAACTACACTCCACCGTAGCTACACATCGTTGTAGCTACACA
CCGCTGTAACTACACACCACTGTAACTACACACCACCGTAGCTAAAAATCACCCAATCTCCATCC
CCACCACCCAGTCTCCATCCCCGCCACCCTCTCCACCTCAACCACCCATCCATCCCCACCACTCA
TCCACAATCTCCACCCCTCCACCGTCACCACCACTCATCCACCATCTCCACTTATCACCATCCCT
ACGCTCTCCACACCACCACCCTCTCCATGTCCTCCACCCACCCTACATTCCCACCACGCTCTCCA
CCCCCCCTTCCACCTCCTTCCCCCTCCGCCTTCCCCCTCCTCGGACTTGGGTTTGCAGCCCGGCC
CGTGCGGCGCGCACCGCACTTTTCCACCCAAATTGCTACCAGTTGCCACCAACGAAATATCTCAA
AATGTCTAGTGCCATGCAAGTGGATAGCCCCGAGATCGACGAAGG
Found at i:511343 original size:16 final size:16
Alignment explanation
Indices: 511311--511406 Score: 102
Period size: 16 Copynumber: 6.0 Consensus size: 16
511301 GATCCAGACC
*
511311 CACACCACTGTAACTA
1 CACACCACTGTAGCTA
* *
511327 CACTCCACCGTAGCTA
1 CACACCACTGTAGCTA
* **
511343 CACATCGTTGTAGCTA
1 CACACCACTGTAGCTA
* *
511359 CACACCGCTGTAACTA
1 CACACCACTGTAGCTA
*
511375 CACACCACTGTAACTA
1 CACACCACTGTAGCTA
*
511391 CACACCACCGTAGCTA
1 CACACCACTGTAGCTA
511407 AAAATCACCC
Statistics
Matches: 66, Mismatches: 14, Indels: 0
0.82 0.17 0.00
Matches are distributed among these distances:
16 66 1.00
ACGTcount: A:0.31, C:0.38, G:0.11, T:0.20
Consensus pattern (16 bp):
CACACCACTGTAGCTA
Left flanking sequence: Indices 510811 -- 511310
AATATTTTCCCACGGAGGCGTCGGGGAAAGGTTAAACGGGAGAAGACGCCGACGGCGGTGGTGGG
CGGGAAAATAGCACAAGGCGGAGGCATCGGGCATCTGGGTGCGGCCAGGGGGCGTTTACCTGGGT
GGAGGTTTGACAGGACAGGGCCTAGGCGGTGGATTGGCTGCAAACTGCCACAAAGTGGGATTGCG
TCATGGACGGCCAGGAATGCGAGATAGGGGCCAAGTTGGAGGACAAGTAGGAGGACAAGTTGGAG
GGCGAGTTTGTAGGGAGACTTCTAGCATTGGGGAAAGAAGAGGAAGGGTGGTTGGTCTTTAATTA
TCAGACGCTCGATTAGCGACGGGTGGCTCTGACGTATGGTTTACAGTATGCACCCTGCGAACTAG
CCGCCAACTACGCAGTCACCATAGTCGCCACTCAGACAGTACCCAGACCCACCAATCAGTCAGTA
CCGAGACCCACCAATCAGCTACAGACCCAGACTCAGATCCAGACC
Right flanking sequence: Indices 511407 -- 511906
AAAATCACCCAATCTCCATCCCCACCACCCAGTCTCCATCCCCGCCACCCTCTCCACCTCAACCA
CCCATCCATCCCCACCACTCATCCACAATCTCCACCCCTCCACCGTCACCACCACTCATCCACCA
TCTCCACTTATCACCATCCCTACGCTCTCCACACCACCACCCTCTCCATGTCCTCCACCCACCCT
ACATTCCCACCACGCTCTCCACCCCCCCTTCCACCTCCTTCCCCCTCCGCCTTCCCCCTCCTCGG
ACTTGGGTTTGCAGCCCGGCCCGTGCGGCGCGCACCGCACTTTTCCACCCAAATTGCTACCAGTT
GCCACCAACGAAATATCTCAAAATGTCTAGTGCCATGCAAGTGGATAGCCCCGAGATCGACGAAG
GGCTCTACTCGCGTCAATTGTATGTGCTCGGCAAGGAGGCCATGCTCAAAATGCAGGCGGCCAAC
GTGCTCGTGGTGGGGCTCAAGGGCCTCGGAGTCGAGATCGCCAAG
Found at i:511404 original size:48 final size:48
Alignment explanation
Indices: 511311--511406 Score: 120
Period size: 48 Copynumber: 2.0 Consensus size: 48
511301 GATCCAGACC
* * * ***
511311 CACACCACTGTAACTACACTCCACCGTAGCTACACATCGTTGTAGCTA
1 CACACCACTGTAACTACACACCACCGTAACTACACACCACCGTAGCTA
* *
511359 CACACCGCTGTAACTACACACCACTGTAACTACACACCACCGTAGCTA
1 CACACCACTGTAACTACACACCACCGTAACTACACACCACCGTAGCTA
511407 AAAATCACCC
Statistics
Matches: 40, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
48 40 1.00
ACGTcount: A:0.31, C:0.38, G:0.11, T:0.20
Consensus pattern (48 bp):
CACACCACTGTAACTACACACCACCGTAACTACACACCACCGTAGCTA
Left flanking sequence: Indices 510811 -- 511310
AATATTTTCCCACGGAGGCGTCGGGGAAAGGTTAAACGGGAGAAGACGCCGACGGCGGTGGTGGG
CGGGAAAATAGCACAAGGCGGAGGCATCGGGCATCTGGGTGCGGCCAGGGGGCGTTTACCTGGGT
GGAGGTTTGACAGGACAGGGCCTAGGCGGTGGATTGGCTGCAAACTGCCACAAAGTGGGATTGCG
TCATGGACGGCCAGGAATGCGAGATAGGGGCCAAGTTGGAGGACAAGTAGGAGGACAAGTTGGAG
GGCGAGTTTGTAGGGAGACTTCTAGCATTGGGGAAAGAAGAGGAAGGGTGGTTGGTCTTTAATTA
TCAGACGCTCGATTAGCGACGGGTGGCTCTGACGTATGGTTTACAGTATGCACCCTGCGAACTAG
CCGCCAACTACGCAGTCACCATAGTCGCCACTCAGACAGTACCCAGACCCACCAATCAGTCAGTA
CCGAGACCCACCAATCAGCTACAGACCCAGACTCAGATCCAGACC
Right flanking sequence: Indices 511407 -- 511906
AAAATCACCCAATCTCCATCCCCACCACCCAGTCTCCATCCCCGCCACCCTCTCCACCTCAACCA
CCCATCCATCCCCACCACTCATCCACAATCTCCACCCCTCCACCGTCACCACCACTCATCCACCA
TCTCCACTTATCACCATCCCTACGCTCTCCACACCACCACCCTCTCCATGTCCTCCACCCACCCT
ACATTCCCACCACGCTCTCCACCCCCCCTTCCACCTCCTTCCCCCTCCGCCTTCCCCCTCCTCGG
ACTTGGGTTTGCAGCCCGGCCCGTGCGGCGCGCACCGCACTTTTCCACCCAAATTGCTACCAGTT
GCCACCAACGAAATATCTCAAAATGTCTAGTGCCATGCAAGTGGATAGCCCCGAGATCGACGAAG
GGCTCTACTCGCGTCAATTGTATGTGCTCGGCAAGGAGGCCATGCTCAAAATGCAGGCGGCCAAC
GTGCTCGTGGTGGGGCTCAAGGGCCTCGGAGTCGAGATCGCCAAG
Found at i:511462 original size:18 final size:19
Alignment explanation
Indices: 511412--511494 Score: 84
Period size: 20 Copynumber: 4.4 Consensus size: 19
511402 AGCTAAAAAT
511412 CACCCAATCTCCATCCCCAC
1 CACCC-ATCTCCATCCCCAC
*
511432 CACCCAGTCTCCATCCCCGC
1 CACCCA-TCTCCATCCCCAC
*
511452 CACCC-TCTCCA-CCTCAAC
1 CACCCATCTCCATCC-CCAC
511470 CACCCA--TCCATCCCCAC
1 CACCCATCTCCATCCCCAC
*
511487 CACTCATC
1 CACCCATC
511495 CACAATCTCC
Statistics
Matches: 52, Mismatches: 5, Indels: 13
0.74 0.07 0.19
Matches are distributed among these distances:
17 14 0.27
18 15 0.29
19 1 0.02
20 22 0.42
ACGTcount: A:0.22, C:0.60, G:0.02, T:0.16
Consensus pattern (19 bp):
CACCCATCTCCATCCCCAC
Left flanking sequence: Indices 510912 -- 511411
GGGTGCGGCCAGGGGGCGTTTACCTGGGTGGAGGTTTGACAGGACAGGGCCTAGGCGGTGGATTG
GCTGCAAACTGCCACAAAGTGGGATTGCGTCATGGACGGCCAGGAATGCGAGATAGGGGCCAAGT
TGGAGGACAAGTAGGAGGACAAGTTGGAGGGCGAGTTTGTAGGGAGACTTCTAGCATTGGGGAAA
GAAGAGGAAGGGTGGTTGGTCTTTAATTATCAGACGCTCGATTAGCGACGGGTGGCTCTGACGTA
TGGTTTACAGTATGCACCCTGCGAACTAGCCGCCAACTACGCAGTCACCATAGTCGCCACTCAGA
CAGTACCCAGACCCACCAATCAGTCAGTACCGAGACCCACCAATCAGCTACAGACCCAGACTCAG
ATCCAGACCCACACCACTGTAACTACACTCCACCGTAGCTACACATCGTTGTAGCTACACACCGC
TGTAACTACACACCACTGTAACTACACACCACCGTAGCTAAAAAT
Right flanking sequence: Indices 511495 -- 511994
CACAATCTCCACCCCTCCACCGTCACCACCACTCATCCACCATCTCCACTTATCACCATCCCTAC
GCTCTCCACACCACCACCCTCTCCATGTCCTCCACCCACCCTACATTCCCACCACGCTCTCCACC
CCCCCTTCCACCTCCTTCCCCCTCCGCCTTCCCCCTCCTCGGACTTGGGTTTGCAGCCCGGCCCG
TGCGGCGCGCACCGCACTTTTCCACCCAAATTGCTACCAGTTGCCACCAACGAAATATCTCAAAA
TGTCTAGTGCCATGCAAGTGGATAGCCCCGAGATCGACGAAGGGCTCTACTCGCGTCAATTGTAT
GTGCTCGGCAAGGAGGCCATGCTCAAAATGCAGGCGGCCAACGTGCTCGTGGTGGGGCTCAAGGG
CCTCGGAGTCGAGATCGCCAAGAACGTGGCCCTCGCCGGAGTCAAGCTGTTGGACTTGTACGACC
CGCTGACGGTGTCGGTGGGCGACTTGAGCGCCCAGTTTTTCTTGT
Found at i:511533 original size:20 final size:20
Alignment explanation
Indices: 511477--511543 Score: 68
Period size: 20 Copynumber: 3.5 Consensus size: 20
511467 AACCACCCAT
*
511477 CCATCCCCACCACTCATCCA
1 CCATCACCACCACTCATCCA
* *
511497 CAATCTCCACC-C-C-TCCA
1 CCATCACCACCACTCATCCA
*
511514 CCGTCACCACCACTCATCCA
1 CCATCACCACCACTCATCCA
*
511534 CCATCTCCAC
1 CCATCACCAC
511544 TTATCACCAT
Statistics
Matches: 37, Mismatches: 7, Indels: 6
0.74 0.14 0.12
Matches are distributed among these distances:
17 12 0.32
18 2 0.05
19 2 0.05
20 21 0.57
ACGTcount: A:0.24, C:0.58, G:0.01, T:0.16
Consensus pattern (20 bp):
CCATCACCACCACTCATCCA
Left flanking sequence: Indices 510977 -- 511476
GCTGCAAACTGCCACAAAGTGGGATTGCGTCATGGACGGCCAGGAATGCGAGATAGGGGCCAAGT
TGGAGGACAAGTAGGAGGACAAGTTGGAGGGCGAGTTTGTAGGGAGACTTCTAGCATTGGGGAAA
GAAGAGGAAGGGTGGTTGGTCTTTAATTATCAGACGCTCGATTAGCGACGGGTGGCTCTGACGTA
TGGTTTACAGTATGCACCCTGCGAACTAGCCGCCAACTACGCAGTCACCATAGTCGCCACTCAGA
CAGTACCCAGACCCACCAATCAGTCAGTACCGAGACCCACCAATCAGCTACAGACCCAGACTCAG
ATCCAGACCCACACCACTGTAACTACACTCCACCGTAGCTACACATCGTTGTAGCTACACACCGC
TGTAACTACACACCACTGTAACTACACACCACCGTAGCTAAAAATCACCCAATCTCCATCCCCAC
CACCCAGTCTCCATCCCCGCCACCCTCTCCACCTCAACCACCCAT
Right flanking sequence: Indices 511544 -- 512043
TTATCACCATCCCTACGCTCTCCACACCACCACCCTCTCCATGTCCTCCACCCACCCTACATTCC
CACCACGCTCTCCACCCCCCCTTCCACCTCCTTCCCCCTCCGCCTTCCCCCTCCTCGGACTTGGG
TTTGCAGCCCGGCCCGTGCGGCGCGCACCGCACTTTTCCACCCAAATTGCTACCAGTTGCCACCA
ACGAAATATCTCAAAATGTCTAGTGCCATGCAAGTGGATAGCCCCGAGATCGACGAAGGGCTCTA
CTCGCGTCAATTGTATGTGCTCGGCAAGGAGGCCATGCTCAAAATGCAGGCGGCCAACGTGCTCG
TGGTGGGGCTCAAGGGCCTCGGAGTCGAGATCGCCAAGAACGTGGCCCTCGCCGGAGTCAAGCTG
TTGGACTTGTACGACCCGCTGACGGTGTCGGTGGGCGACTTGAGCGCCCAGTTTTTCTTGTCCGA
GGACGATGTCGGCTCCACCACCCGCGCAGCCGCCACCCGGCCCCG
Found at i:511543 original size:17 final size:17
Alignment explanation
Indices: 511486--511554 Score: 50
Period size: 17 Copynumber: 3.9 Consensus size: 17
511476 TCCATCCCCA
*
511486 CCACTCATCCACAATCT
1 CCACTCATCCACCATCT
* * * *
511503 CCACCCCTCCACCGTCACCA
1 CCACTCATCCA-C--CATCT
511523 CCACTCATCCACCATCT
1 CCACTCATCCACCATCT
*
511540 CCACTTAT-CACCATC
1 CCACTCATCCACCATC
511555 CCTACGCTCT
Statistics
Matches: 39, Mismatches: 10, Indels: 7
0.70 0.18 0.12
Matches are distributed among these distances:
16 7 0.18
17 19 0.49
18 1 0.03
19 1 0.03
20 11 0.28
ACGTcount: A:0.25, C:0.54, G:0.01, T:0.20
Consensus pattern (17 bp):
CCACTCATCCACCATCT
Left flanking sequence: Indices 510986 -- 511485
TGCCACAAAGTGGGATTGCGTCATGGACGGCCAGGAATGCGAGATAGGGGCCAAGTTGGAGGACA
AGTAGGAGGACAAGTTGGAGGGCGAGTTTGTAGGGAGACTTCTAGCATTGGGGAAAGAAGAGGAA
GGGTGGTTGGTCTTTAATTATCAGACGCTCGATTAGCGACGGGTGGCTCTGACGTATGGTTTACA
GTATGCACCCTGCGAACTAGCCGCCAACTACGCAGTCACCATAGTCGCCACTCAGACAGTACCCA
GACCCACCAATCAGTCAGTACCGAGACCCACCAATCAGCTACAGACCCAGACTCAGATCCAGACC
CACACCACTGTAACTACACTCCACCGTAGCTACACATCGTTGTAGCTACACACCGCTGTAACTAC
ACACCACTGTAACTACACACCACCGTAGCTAAAAATCACCCAATCTCCATCCCCACCACCCAGTC
TCCATCCCCGCCACCCTCTCCACCTCAACCACCCATCCATCCCCA
Right flanking sequence: Indices 511555 -- 512054
CCTACGCTCTCCACACCACCACCCTCTCCATGTCCTCCACCCACCCTACATTCCCACCACGCTCT
CCACCCCCCCTTCCACCTCCTTCCCCCTCCGCCTTCCCCCTCCTCGGACTTGGGTTTGCAGCCCG
GCCCGTGCGGCGCGCACCGCACTTTTCCACCCAAATTGCTACCAGTTGCCACCAACGAAATATCT
CAAAATGTCTAGTGCCATGCAAGTGGATAGCCCCGAGATCGACGAAGGGCTCTACTCGCGTCAAT
TGTATGTGCTCGGCAAGGAGGCCATGCTCAAAATGCAGGCGGCCAACGTGCTCGTGGTGGGGCTC
AAGGGCCTCGGAGTCGAGATCGCCAAGAACGTGGCCCTCGCCGGAGTCAAGCTGTTGGACTTGTA
CGACCCGCTGACGGTGTCGGTGGGCGACTTGAGCGCCCAGTTTTTCTTGTCCGAGGACGATGTCG
GCTCCACCACCCGCGCAGCCGCCACCCGGCCCCGCTTGGCCGAGC
Found at i:511656 original size:13 final size:13
Alignment explanation
Indices: 511638--511662 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
511628 CCTTCCACCT
511638 CCTTCCCCCTCCG
1 CCTTCCCCCTCCG
511651 CCTTCCCCCTCC
1 CCTTCCCCCTCC
511663 TCGGACTTGG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.00, C:0.72, G:0.04, T:0.24
Consensus pattern (13 bp):
CCTTCCCCCTCCG
Left flanking sequence: Indices 511138 -- 511637
AGACGCTCGATTAGCGACGGGTGGCTCTGACGTATGGTTTACAGTATGCACCCTGCGAACTAGCC
GCCAACTACGCAGTCACCATAGTCGCCACTCAGACAGTACCCAGACCCACCAATCAGTCAGTACC
GAGACCCACCAATCAGCTACAGACCCAGACTCAGATCCAGACCCACACCACTGTAACTACACTCC
ACCGTAGCTACACATCGTTGTAGCTACACACCGCTGTAACTACACACCACTGTAACTACACACCA
CCGTAGCTAAAAATCACCCAATCTCCATCCCCACCACCCAGTCTCCATCCCCGCCACCCTCTCCA
CCTCAACCACCCATCCATCCCCACCACTCATCCACAATCTCCACCCCTCCACCGTCACCACCACT
CATCCACCATCTCCACTTATCACCATCCCTACGCTCTCCACACCACCACCCTCTCCATGTCCTCC
ACCCACCCTACATTCCCACCACGCTCTCCACCCCCCCTTCCACCT
Right flanking sequence: Indices 511663 -- 512162
TCGGACTTGGGTTTGCAGCCCGGCCCGTGCGGCGCGCACCGCACTTTTCCACCCAAATTGCTACC
AGTTGCCACCAACGAAATATCTCAAAATGTCTAGTGCCATGCAAGTGGATAGCCCCGAGATCGAC
GAAGGGCTCTACTCGCGTCAATTGTATGTGCTCGGCAAGGAGGCCATGCTCAAAATGCAGGCGGC
CAACGTGCTCGTGGTGGGGCTCAAGGGCCTCGGAGTCGAGATCGCCAAGAACGTGGCCCTCGCCG
GAGTCAAGCTGTTGGACTTGTACGACCCGCTGACGGTGTCGGTGGGCGACTTGAGCGCCCAGTTT
TTCTTGTCCGAGGACGATGTCGGCTCCACCACCCGCGCAGCCGCCACCCGGCCCCGCTTGGCCGA
GCTCAACGCCTACGTGCCCATTGGCGAGGCCCCCGACTTGCTGGAGGAGACCCTTGGCCGCTACA
AGTGCGTGGTCATCACCGAGGGGGTGCTGCTTGCCGAGGCCGTGC
Found at i:512734 original size:12 final size:12
Alignment explanation
Indices: 512719--512744 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
512709 AGCAGGTGTT
512719 GGAGCTTGCCGA
1 GGAGCTTGCCGA
512731 GGAGCTTGCCGA
1 GGAGCTTGCCGA
512743 GG
1 GG
512745 GCCACGTGAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.15, C:0.23, G:0.46, T:0.15
Consensus pattern (12 bp):
GGAGCTTGCCGA
Left flanking sequence: Indices 512219 -- 512718
GGGCTTTTCGGCCAGTTGTTTGTTGACTTTGGCGCCAAGTTCACCATCGTCGACCAGACGGGCGA
GGAGCCCAAGACAGGCTTGGTGTCGGACGTGGAGACCGACTCGGGCACCGTGCTGACCCTCGGCG
ACGACGCGCGCCACGGGCTCGAGGACGGCGACTACGTCAAGTTCACCGAGATCGAGGGGGTGCCC
GAGCTCAACAGCGGCGAGCCGTACCGGGTAACGGTGTTGGGCCCCTACGCGTTCAAGATCGACGT
GGCCGACAAGTCCGCCAAATACGTCAAAGGCGGCATCTGGACCCAGGTCAAAATGCCCAAGGAGG
TCCAGTTCGAGCTGATGGAGGAGCAGATGCGCGACCCCGCTTACGTCATCAGCGACTTTGCCAAG
ATGGAGCGCCCGGCCCAGTTGCACGTGGGCTTCCAGGCGCTCGACGCGTTCGAGCAGAAGCACTC
GCGGTTGCCGCACCCCCACAACGCCGACGACGCCGAGCAGGTGTT
Right flanking sequence: Indices 512745 -- 513244
GCCACGTGACCCTGGTGGACAAGGCGTTGATCAAGGAGTTGGCGTTTGAGGCGCGTGGCGAGTTG
CCGGCGATGTGCGCGTTCTACGGCGGGCTCATTGCCCAAGAGGTGCTCAAGAACGTGCTGTCCAA
GTTTGGCCCGGTGATGCAGTGGCTCTACTTTGACCTGTTGGAGCTGTTGCCCGACCACACCCAGT
TCCCGCGCACCGCCGCCACCACGGCGCCGCGCCAGCTGCGGTACGACGCCCAGGTGGCGGTGTTT
GGCCAGGCGTTCCACGACAAGCTCGCCAACTTGCGGGTGTTTCTCGTGGGCAGCGGCGCCATCGG
GTGCGAGATGCTCAAGAACTGGGCGATGATGGGGCTCGGGCTGGGTGCTGACGGGCGCATCACCG
TCACCGACAACGACCTGATCGAGAAGCTGAACCTCAACCGCCAGTTTTTGTTCCGCCCGAAGGAC
GTGGGCAAGAACAAGCTGGAGGTGGCGGCCGCCGCCGTTGCCGCG
Found at i:524235 original size:21 final size:21
Alignment explanation
Indices: 524202--524250 Score: 55
Period size: 21 Copynumber: 2.3 Consensus size: 21
524192 CGCTGCGGTT
*
524202 GCCCCC-AATGACGCTGCCGAC
1 GCCCCCGAA-GACGCCGCCGAC
* *
524223 GCTCCCGAAGACGCCGCGGAC
1 GCCCCCGAAGACGCCGCCGAC
524244 GCCCCCG
1 GCCCCCG
524251 CCCCACCCGC
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
21 21 0.91
22 2 0.09
ACGTcount: A:0.16, C:0.49, G:0.29, T:0.06
Consensus pattern (21 bp):
GCCCCCGAAGACGCCGCCGAC
Left flanking sequence: Indices 523702 -- 524201
CTACAACCACGTGATGGCGTCGTCCGCGCGATACTATTGTGCTGAAGGTGTAGTCGATGCTGAGA
ATCCGTTGCCCCACCATATACGCACTCACCAATTGCACCGGTGGTACTTGGGCGAGTCCCAGCCC
GCTCTCGAATGCGAGGGTTACCGCGATACTATAGGCAAATACACAACCTAACAGCTAGACAACAG
CGACAACCACAGGCTATTTTGTCTGCACACTCTGTTACACGATTACGCCTTCTCGTAAGTTGACG
CGAAAATTGTTTGAGACGCGTACCATGAAGCGAGGGGTGACGATAGACGAGTTCTTCAGTCTGAA
CAAGAAACCAAAGAGGGCGAATGGCTCCAAGCCCGCCAAGGCCACTGCAGCGGCTCCCCCGAAAA
CGAGTGAGCCCGCTAGTGGCAAAGAGAATGAGATGCCCACTGAAGACGTGGACAACGCCCATAAA
GTCGCGGACTCTACAGAGGACACACCACAAGATGACGCTGCGGTT
Right flanking sequence: Indices 524251 -- 524750
CCCCACCCGCCACCTCCTACGCCGCCTACTGCAAAAAGTACAACTTCGACAAGGCCAAGTGGATC
AAGAGCCTCAGTGCCGAAGAGCGCCAGCTCTTGGCCACCGAGATCAACTATCTCCACATCACCTG
GCTCGTGTTTCTCCACAAAGAGCTCACGAAGCCCTACTTTCTCCAGCTCAAGCGGTTCCTCAAGC
AGCAGAAAGCCACCATTTTCCCCGCCAACAACCAGATCTACTCGTGGTCGCACCTCACGCCTCTT
CCCAACGTAAAGTGTCTTGTGATGGGCCAGGACCCCTACCACAACTTCAACCAGGCCCACGGGCT
TGCGTTTTCGGTGTTGGAGCCCACGAGACCGCCGCCGTCGCTCCAGAACATCTACAAAACCATCG
CCATCGACTACCCCAGCTTCGTCAACCCGGCCCCCACCGGCACCCGCACGCCAGGTGGCGGCAAT
TTGACGTGCTGGGCCGAACGGGGGGTGCTCATGCTCAATGCGTGT
Found at i:529826 original size:12 final size:12
Alignment explanation
Indices: 529791--529903 Score: 94
Period size: 12 Copynumber: 9.9 Consensus size: 12
529781 GTGCTTGGGC
529791 GAGTGGCCATTG
1 GAGTGGCCATTG
* *
529803 GGGTGG---TCG
1 GAGTGGCCATTG
529812 GAGTGGCCATTG
1 GAGTGGCCATTG
529824 GAGTGGCCATTG
1 GAGTGGCCATTG
* **
529836 GGGTGGTTATTG
1 GAGTGGCCATTG
* *
529848 CAGTCGCCATTG
1 GAGTGGCCATTG
*
529860 GTGTGG-C--TG
1 GAGTGGCCATTG
529869 GAGTGGCCATTG
1 GAGTGGCCATTG
*
529881 GCGTGGCCATTG
1 GAGTGGCCATTG
*
529893 GCGTGGCCATT
1 GAGTGGCCATT
529904 CAATTGGTTA
Statistics
Matches: 78, Mismatches: 17, Indels: 12
0.73 0.16 0.11
Matches are distributed among these distances:
9 14 0.18
10 1 0.01
11 1 0.01
12 62 0.79
ACGTcount: A:0.12, C:0.18, G:0.43, T:0.27
Consensus pattern (12 bp):
GAGTGGCCATTG
Left flanking sequence: Indices 529291 -- 529790
TGACGGGCGGGTTGTCGACAAACGACTGCGAAAGCGCAAAGTTGAGGTTGAGGGGCCGGAGCCCG
AACAACGCCAAGTGGCGGCTCAAAAGCGCCTCCTGCAACGCAGTGAGCTTCAGTGCGTGTTCCAT
GAGCTCGCAGCCGCCGGCCATGGCGGCGCCAAACTCGAGCGCGGCCTGGAAGGTGGTGTTGCCCA
CGCCCGAGCCCAAGTCGTAGAACTTCTGGTTGGGACGCAACCCCACTTTTTCGAGCACCTCCGAG
GTGAACGACGGGAGGAGCTCGCCGTACACCTCGGCGGTGAACGACTTGTAGGCACGGAGCTTGCG
TGAGTTGGTCAGCACCACGCGGGCGTACACCCGGAGGAGGATCTGTTGCAGGACAAACCGCGAGA
GCGAGGTTTTCAGCTGGAGGCGATGGAAGAGCGCTGTGTAGAAGTCGTCGGGGAGGTCGATGACC
TCGGAGTCCACCACGTTGGTTGGCTCTGCGACCCCGTGCTTGGGC
Right flanking sequence: Indices 529904 -- 530403
CAATTGGTTAGACCCGTTCAAATAATCAGACCCGTTCAACTGGTCAGACCCGCTCTTTTGGCCAG
ACCCGTACAGTTCTTCAGACCCCTCCCACTGCACCCGCCCGTACGCAGGCGACAACGCCTCGCCC
ACCACGTCCGCGTACCACATCTCCAACACAAGCTCGCCCGCCGTCAACGGCGGCGCCTCCGCCTC
CGCACAGTACAACCGCTTGAGCTCGCGGTTCAAGTCCGCGTCGCCCCGGGCGTGGATCGCGTGCA
CCTCGGCCCGGTTGGGCGACATCACCAACATCAACGCGTTCCAGGTGTCGATCACCCGCACAAAC
CACGCCATGTCCAGCGCCTCCACCGCGTTCTCCAACAGCTGGCAGAACCCCATCACCTCGTACTG
GATCCGCGCACACCCGTCAAAGTACAACCCGCAGTGGATCTGCATCAACTTGACGATCTCGTACA
CGGGGTCCAACTCGTTCAGCTTGGGCTGGCACAACACAAACAGCT
Found at i:529950 original size:18 final size:18
Alignment explanation
Indices: 529902--529955 Score: 63
Period size: 18 Copynumber: 3.0 Consensus size: 18
529892 GGCGTGGCCA
* *
529902 TTCAATTGGTTAGACCCG
1 TTCAAATGGTCAGACCCG
**
529920 TTCAAATAATCAGACCCG
1 TTCAAATGGTCAGACCCG
*
529938 TTCAACTGGTCAGACCCG
1 TTCAAATGGTCAGACCCG
529956 CTCTTTTGGC
Statistics
Matches: 29, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
18 29 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.26
Consensus pattern (18 bp):
TTCAAATGGTCAGACCCG
Left flanking sequence: Indices 529402 -- 529901
GCTTCAGTGCGTGTTCCATGAGCTCGCAGCCGCCGGCCATGGCGGCGCCAAACTCGAGCGCGGCC
TGGAAGGTGGTGTTGCCCACGCCCGAGCCCAAGTCGTAGAACTTCTGGTTGGGACGCAACCCCAC
TTTTTCGAGCACCTCCGAGGTGAACGACGGGAGGAGCTCGCCGTACACCTCGGCGGTGAACGACT
TGTAGGCACGGAGCTTGCGTGAGTTGGTCAGCACCACGCGGGCGTACACCCGGAGGAGGATCTGT
TGCAGGACAAACCGCGAGAGCGAGGTTTTCAGCTGGAGGCGATGGAAGAGCGCTGTGTAGAAGTC
GTCGGGGAGGTCGATGACCTCGGAGTCCACCACGTTGGTTGGCTCTGCGACCCCGTGCTTGGGCG
AGTGGCCATTGGGGTGGTCGGAGTGGCCATTGGAGTGGCCATTGGGGTGGTTATTGCAGTCGCCA
TTGGTGTGGCTGGAGTGGCCATTGGCGTGGCCATTGGCGTGGCCA
Right flanking sequence: Indices 529956 -- 530455
CTCTTTTGGCCAGACCCGTACAGTTCTTCAGACCCCTCCCACTGCACCCGCCCGTACGCAGGCGA
CAACGCCTCGCCCACCACGTCCGCGTACCACATCTCCAACACAAGCTCGCCCGCCGTCAACGGCG
GCGCCTCCGCCTCCGCACAGTACAACCGCTTGAGCTCGCGGTTCAAGTCCGCGTCGCCCCGGGCG
TGGATCGCGTGCACCTCGGCCCGGTTGGGCGACATCACCAACATCAACGCGTTCCAGGTGTCGAT
CACCCGCACAAACCACGCCATGTCCAGCGCCTCCACCGCGTTCTCCAACAGCTGGCAGAACCCCA
TCACCTCGTACTGGATCCGCGCACACCCGTCAAAGTACAACCCGCAGTGGATCTGCATCAACTTG
ACGATCTCGTACACGGGGTCCAACTCGTTCAGCTTGGGCTGGCACAACACAAACAGCTCGTAGTG
CTGCGGGTACATCAAGAACCGCACCTTGACGGTGTTCAGCTCGTT
Found at i:531815 original size:12 final size:13
Alignment explanation
Indices: 531780--531815 Score: 58
Period size: 12 Copynumber: 2.9 Consensus size: 13
531770 CTTCGGGTCC
531780 AGTCTCAGCT-CT
1 AGTCTCAGCTCCT
531792 AGTCTCAGCTCCT
1 AGTCTCAGCTCCT
531805 -GTCTCAGCTCC
1 AGTCTCAGCTCC
531816 AGTGACTCCA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
12 21 0.91
13 2 0.09
ACGTcount: A:0.14, C:0.39, G:0.17, T:0.31
Consensus pattern (13 bp):
AGTCTCAGCTCCT
Left flanking sequence: Indices 531280 -- 531779
GCTCGCGCAGCAGCGGGGCGCCCGTGGCGAGTGCCAGCCACTTGGCCTCGTACACGAGCTCCTCG
GTGGCGTTTTTGAACCGCGGGCGCGGGCCACACACGAACTGGGTCTCGTGGAACCGCAGCTCCAA
GTACGGGCGCAGGCGGAACGGGAAGTGCGGCGCCAACGTGTCGAAGTCCACGCCCTGCTCCACCC
CGCGCTTCATCACCACTTTCTCGCCGTAGGTGAAGTCGGGCTCGCCGTAGCGGGTGCGGGCCACC
TCCACCAAGTCGGCCATGCGGTACTGGCGGTAGACGTCGCGCACGGCGGTGCGGGTCAAGTCGTT
TTTAAGGAGGTACTCGAGCGGTTCCGGGTCGAACTCGTCGTCCACGGGCTCGGGACGGGGCGGAG
ACGCTGGGAGCGGCGGCACCTGCGACACTTTGTACACGGGTTTAGGCAGGTTGGGCTGTTGAAGC
ATGGGTTTGGCCTGTTTGGGCTGTTTGTGCGCGAGCTTCGGGTCC
Right flanking sequence: Indices 531816 -- 532315
AGTGACTCCAGCTCCAGTTTGACGGCCTGACTCAGCAACACGATCGGGCTGGGCCGGGGAACGCC
CGGTTTCATCCGCAAGACAAAGGTTTTGCGCAGGGGTGCTCCTGTGAACCACAGCAGCTGGCGGG
CCTTTTCGAGCAAGTAGCCGGCAGCCTCGCCCTTGCGGACCTTGGGCCGCGCCAGGAGCCCCGCG
AGCTGCAACTGGCGAATCAACTCGATGCACTCGGCAAAGGTGTGCTTCGGAACGAAAAAGTGGAG
CCGGGTCCGGCTCGGCCACCGCTCGGGACAGTAGCGGTCGATGGTGACCACGGTGTCGATGTCCT
GGGCCAGCCACTGCCCGAGCTGGGCCCGCGCACGCTCCACCAACCCGTGGTCGTACCCGGCGATG
TCGCCGTCCTCGTTGAGCACGTCGTGGATGTCCGCGGGGGACTTGCTGGAGTAGACGGCGTAGAA
GACGGCAAACTGCTGGTAGGCCCAGTCACGCACCTCCGGGGGCAC
Found at i:532675 original size:10 final size:10
Alignment explanation
Indices: 532656--532708 Score: 97
Period size: 10 Copynumber: 5.3 Consensus size: 10
532646 GGGATTGGCG
532656 GGTGTAGGGT
1 GGTGTAGGGT
*
532666 GGTTTAGGGT
1 GGTGTAGGGT
532676 GGTGTAGGGT
1 GGTGTAGGGT
532686 GGTGTAGGGT
1 GGTGTAGGGT
532696 GGTGTAGGGT
1 GGTGTAGGGT
532706 GGT
1 GGT
532709 ACTGTGGTGA
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 41 1.00
ACGTcount: A:0.09, C:0.00, G:0.58, T:0.32
Consensus pattern (10 bp):
GGTGTAGGGT
Left flanking sequence: Indices 532156 -- 532655
CGAGCTGGGCCCGCGCACGCTCCACCAACCCGTGGTCGTACCCGGCGATGTCGCCGTCCTCGTTG
AGCACGTCGTGGATGTCCGCGGGGGACTTGCTGGAGTAGACGGCGTAGAAGACGGCAAACTGCTG
GTAGGCCCAGTCACGCACCTCCGGGGGCACCAGTGCCCACACCTGTTCTGTGGTGAGCATCTTGG
CCTCCATCTCGGCGAGGAGCGATGGCGGATCGTCCACGAGGTCTGCCACGGGGCGGGTGCCGGGG
GGCAGCACGTAGTGGGGCACCACCTCGTCCTTCTCGTCGGTCAGGTGGTCGGACGTGTCCGGGGT
GAACCTTTCGGGGGACTGTTCCAACTTGGGGGAAAACACGTCCATCGTACGTCAACCACCTTTTT
CACCACGGCTTTTGTTTTGAATCGGATTACGCGCGCGCGTCCGACGTGATGGAGAGCGAGGCGCG
TGGGTGGTGGGGAGTGGTGGGGGGTGGCGTGCGTGGGGATTGGCG
Right flanking sequence: Indices 532709 -- 533208
ACTGTGGTGAGAGTGGGTGGTATAGGGTGAGAGTGGGGTGTGCTTAGTGGTTCACTGGTGTACTG
ATTATTTGATCTTATCAGACGCGTGACAGGAAAAGAACCGGGCCTGTTGCTGTGGGCGATGGTCA
CGGTTGCGGAGTGGGCGACATGAGGGGTAGGACAAGGACGTGGGGTGGCCAAGGTTGTGGAGGGA
TAGAGGGGTAGGACCGTTTTGTGGGGAGGACCAAGTTGTGGGGAGGACCAAGTTGTGGGGTAGCC
ACGTTGTGGAGGACCATGTCGTGGAGAACCACGTTGTGGGGTAACCACGTACGGTAGAACCATGT
CGTAGGGCACAAGCCATGATGGGTCACCACGTTGTGGGGTAGGACCATGTTGTAGGGTAGTAGCT
AATTGTATGGTGCTAGCCACGATGTACGGTATAAGTGTTGTCTAGGGCACTAGCCATAAGCAAGT
TAATGGTATTACCCAATTGCATGGTAATAGTCAATTGTATGGAAT
Found at i:532739 original size:20 final size:20
Alignment explanation
Indices: 532659--532748 Score: 85
Period size: 20 Copynumber: 4.4 Consensus size: 20
532649 ATTGGCGGGT
* *
532659 GTAGGGTGGTTTAGGGTGGT
1 GTAGGGTGGTATAGGGTGGA
* *
532679 GTAGGGTGGTGTAGGGTGGT
1 GTAGGGTGGTATAGGGTGGA
532699 GTAGGGTGGTACT-GTGGTGAGA
1 GTAGGGTGGTA-TAG-GGTG-GA
532721 GT-GGGTGGTATAGGGTGAGA
1 GTAGGGTGGTATAGGGTG-GA
*
532741 GTGGGGTG
1 GTAGGGTG
532749 TGCTTAGTGG
Statistics
Matches: 62, Mismatches: 3, Indels: 9
0.84 0.04 0.12
Matches are distributed among these distances:
20 40 0.65
21 19 0.31
22 3 0.05
ACGTcount: A:0.13, C:0.01, G:0.57, T:0.29
Consensus pattern (20 bp):
GTAGGGTGGTATAGGGTGGA
Left flanking sequence: Indices 532159 -- 532658
GCTGGGCCCGCGCACGCTCCACCAACCCGTGGTCGTACCCGGCGATGTCGCCGTCCTCGTTGAGC
ACGTCGTGGATGTCCGCGGGGGACTTGCTGGAGTAGACGGCGTAGAAGACGGCAAACTGCTGGTA
GGCCCAGTCACGCACCTCCGGGGGCACCAGTGCCCACACCTGTTCTGTGGTGAGCATCTTGGCCT
CCATCTCGGCGAGGAGCGATGGCGGATCGTCCACGAGGTCTGCCACGGGGCGGGTGCCGGGGGGC
AGCACGTAGTGGGGCACCACCTCGTCCTTCTCGTCGGTCAGGTGGTCGGACGTGTCCGGGGTGAA
CCTTTCGGGGGACTGTTCCAACTTGGGGGAAAACACGTCCATCGTACGTCAACCACCTTTTTCAC
CACGGCTTTTGTTTTGAATCGGATTACGCGCGCGCGTCCGACGTGATGGAGAGCGAGGCGCGTGG
GTGGTGGGGAGTGGTGGGGGGTGGCGTGCGTGGGGATTGGCGGGT
Right flanking sequence: Indices 532749 -- 533248
TGCTTAGTGGTTCACTGGTGTACTGATTATTTGATCTTATCAGACGCGTGACAGGAAAAGAACCG
GGCCTGTTGCTGTGGGCGATGGTCACGGTTGCGGAGTGGGCGACATGAGGGGTAGGACAAGGACG
TGGGGTGGCCAAGGTTGTGGAGGGATAGAGGGGTAGGACCGTTTTGTGGGGAGGACCAAGTTGTG
GGGAGGACCAAGTTGTGGGGTAGCCACGTTGTGGAGGACCATGTCGTGGAGAACCACGTTGTGGG
GTAACCACGTACGGTAGAACCATGTCGTAGGGCACAAGCCATGATGGGTCACCACGTTGTGGGGT
AGGACCATGTTGTAGGGTAGTAGCTAATTGTATGGTGCTAGCCACGATGTACGGTATAAGTGTTG
TCTAGGGCACTAGCCATAAGCAAGTTAATGGTATTACCCAATTGCATGGTAATAGTCAATTGTAT
GGAATCAGTCAATTCTGGTACTAGCCACGGTGTAGGGCATGAGTG
Found at i:532935 original size:17 final size:17
Alignment explanation
Indices: 532922--532963 Score: 84
Period size: 17 Copynumber: 2.5 Consensus size: 17
532912 TAGGACCGTT
532922 TTGTGGGGAGGACCAAG
1 TTGTGGGGAGGACCAAG
532939 TTGTGGGGAGGACCAAG
1 TTGTGGGGAGGACCAAG
532956 TTGTGGGG
1 TTGTGGGG
532964 TAGCCACGTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 25 1.00
ACGTcount: A:0.19, C:0.10, G:0.50, T:0.21
Consensus pattern (17 bp):
TTGTGGGGAGGACCAAG
Left flanking sequence: Indices 532422 -- 532921
ACGTAGTGGGGCACCACCTCGTCCTTCTCGTCGGTCAGGTGGTCGGACGTGTCCGGGGTGAACCT
TTCGGGGGACTGTTCCAACTTGGGGGAAAACACGTCCATCGTACGTCAACCACCTTTTTCACCAC
GGCTTTTGTTTTGAATCGGATTACGCGCGCGCGTCCGACGTGATGGAGAGCGAGGCGCGTGGGTG
GTGGGGAGTGGTGGGGGGTGGCGTGCGTGGGGATTGGCGGGTGTAGGGTGGTTTAGGGTGGTGTA
GGGTGGTGTAGGGTGGTGTAGGGTGGTACTGTGGTGAGAGTGGGTGGTATAGGGTGAGAGTGGGG
TGTGCTTAGTGGTTCACTGGTGTACTGATTATTTGATCTTATCAGACGCGTGACAGGAAAAGAAC
CGGGCCTGTTGCTGTGGGCGATGGTCACGGTTGCGGAGTGGGCGACATGAGGGGTAGGACAAGGA
CGTGGGGTGGCCAAGGTTGTGGAGGGATAGAGGGGTAGGACCGTT
Right flanking sequence: Indices 532964 -- 533463
TAGCCACGTTGTGGAGGACCATGTCGTGGAGAACCACGTTGTGGGGTAACCACGTACGGTAGAAC
CATGTCGTAGGGCACAAGCCATGATGGGTCACCACGTTGTGGGGTAGGACCATGTTGTAGGGTAG
TAGCTAATTGTATGGTGCTAGCCACGATGTACGGTATAAGTGTTGTCTAGGGCACTAGCCATAAG
CAAGTTAATGGTATTACCCAATTGCATGGTAATAGTCAATTGTATGGAATCAGTCAATTCTGGTA
CTAGCCACGGTGTAGGGCATGAGTGTTGTTTAGGGTACTAGCCATAGACTAGTCGATTAGATGGC
AACAATTGATTGTCTGGTACTAGTCAATTGTATGGTAATAGTCAATTGTATGAAACTAGTCAATT
TTGGTCCTACAAGCAGCTAAGCCGGACCGTATCCCCTGTGCTCCTTCAGTCGTGGGTAGCTGTTG
GTGGGCTTAAAATGTTGGTTACCTCACCCACCCACTTTCACATCG
Found at i:532976 original size:16 final size:15
Alignment explanation
Indices: 532922--533018 Score: 70
Period size: 17 Copynumber: 6.1 Consensus size: 15
532912 TAGGACCGTT
*
532922 TTGTGGGGAGGACCAAG
1 TTGTGGGGA--ACCACG
*
532939 TTGTGGGGAGGACCAAG
1 TTGTGGGGA--ACCACG
*
532956 TTGTGGGGTAGCCACG
1 TTGTGGGG-AACCACG
*
532972 TTGTGGAGG-ACCATG
1 TTGTGG-GGAACCACG
* *
532987 TCGTGGAGAACCACG
1 TTGTGGGGAACCACG
533002 TTGTGGGGTAACCACG
1 TTGTGGGG-AACCACG
533018 T
1 T
533019 ACGGTAGAAC
Statistics
Matches: 67, Mismatches: 9, Indels: 9
0.79 0.11 0.11
Matches are distributed among these distances:
14 1 0.01
15 20 0.30
16 18 0.27
17 27 0.40
18 1 0.01
ACGTcount: A:0.21, C:0.16, G:0.41, T:0.22
Consensus pattern (15 bp):
TTGTGGGGAACCACG
Left flanking sequence: Indices 532422 -- 532921
ACGTAGTGGGGCACCACCTCGTCCTTCTCGTCGGTCAGGTGGTCGGACGTGTCCGGGGTGAACCT
TTCGGGGGACTGTTCCAACTTGGGGGAAAACACGTCCATCGTACGTCAACCACCTTTTTCACCAC
GGCTTTTGTTTTGAATCGGATTACGCGCGCGCGTCCGACGTGATGGAGAGCGAGGCGCGTGGGTG
GTGGGGAGTGGTGGGGGGTGGCGTGCGTGGGGATTGGCGGGTGTAGGGTGGTTTAGGGTGGTGTA
GGGTGGTGTAGGGTGGTGTAGGGTGGTACTGTGGTGAGAGTGGGTGGTATAGGGTGAGAGTGGGG
TGTGCTTAGTGGTTCACTGGTGTACTGATTATTTGATCTTATCAGACGCGTGACAGGAAAAGAAC
CGGGCCTGTTGCTGTGGGCGATGGTCACGGTTGCGGAGTGGGCGACATGAGGGGTAGGACAAGGA
CGTGGGGTGGCCAAGGTTGTGGAGGGATAGAGGGGTAGGACCGTT
Right flanking sequence: Indices 533019 -- 533518
ACGGTAGAACCATGTCGTAGGGCACAAGCCATGATGGGTCACCACGTTGTGGGGTAGGACCATGT
TGTAGGGTAGTAGCTAATTGTATGGTGCTAGCCACGATGTACGGTATAAGTGTTGTCTAGGGCAC
TAGCCATAAGCAAGTTAATGGTATTACCCAATTGCATGGTAATAGTCAATTGTATGGAATCAGTC
AATTCTGGTACTAGCCACGGTGTAGGGCATGAGTGTTGTTTAGGGTACTAGCCATAGACTAGTCG
ATTAGATGGCAACAATTGATTGTCTGGTACTAGTCAATTGTATGGTAATAGTCAATTGTATGAAA
CTAGTCAATTTTGGTCCTACAAGCAGCTAAGCCGGACCGTATCCCCTGTGCTCCTTCAGTCGTGG
GTAGCTGTTGGTGGGCTTAAAATGTTGGTTACCTCACCCACCCACTTTCACATCGTACATCATAC
ACCACCAATACCACCAAAACCCAACACACTACAACTGCCACACTC
Found at i:532983 original size:31 final size:30
Alignment explanation
Indices: 532945--533007 Score: 81
Period size: 31 Copynumber: 2.1 Consensus size: 30
532935 CAAGTTGTGG
* * *
532945 GGAGGACCAAGTTGTGGGGTAGCCACGTTGT
1 GGAGGACCAAGTCGTGGAG-AACCACGTTGT
*
532976 GGAGGACCATGTCGTGGAGAACCACGTTGT
1 GGAGGACCAAGTCGTGGAGAACCACGTTGT
533006 GG
1 GG
533008 GGTAACCACG
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
30 12 0.43
31 16 0.57
ACGTcount: A:0.21, C:0.17, G:0.41, T:0.21
Consensus pattern (30 bp):
GGAGGACCAAGTCGTGGAGAACCACGTTGT
Left flanking sequence: Indices 532445 -- 532944
CTTCTCGTCGGTCAGGTGGTCGGACGTGTCCGGGGTGAACCTTTCGGGGGACTGTTCCAACTTGG
GGGAAAACACGTCCATCGTACGTCAACCACCTTTTTCACCACGGCTTTTGTTTTGAATCGGATTA
CGCGCGCGCGTCCGACGTGATGGAGAGCGAGGCGCGTGGGTGGTGGGGAGTGGTGGGGGGTGGCG
TGCGTGGGGATTGGCGGGTGTAGGGTGGTTTAGGGTGGTGTAGGGTGGTGTAGGGTGGTGTAGGG
TGGTACTGTGGTGAGAGTGGGTGGTATAGGGTGAGAGTGGGGTGTGCTTAGTGGTTCACTGGTGT
ACTGATTATTTGATCTTATCAGACGCGTGACAGGAAAAGAACCGGGCCTGTTGCTGTGGGCGATG
GTCACGGTTGCGGAGTGGGCGACATGAGGGGTAGGACAAGGACGTGGGGTGGCCAAGGTTGTGGA
GGGATAGAGGGGTAGGACCGTTTTGTGGGGAGGACCAAGTTGTGG
Right flanking sequence: Indices 533008 -- 533507
GGTAACCACGTACGGTAGAACCATGTCGTAGGGCACAAGCCATGATGGGTCACCACGTTGTGGGG
TAGGACCATGTTGTAGGGTAGTAGCTAATTGTATGGTGCTAGCCACGATGTACGGTATAAGTGTT
GTCTAGGGCACTAGCCATAAGCAAGTTAATGGTATTACCCAATTGCATGGTAATAGTCAATTGTA
TGGAATCAGTCAATTCTGGTACTAGCCACGGTGTAGGGCATGAGTGTTGTTTAGGGTACTAGCCA
TAGACTAGTCGATTAGATGGCAACAATTGATTGTCTGGTACTAGTCAATTGTATGGTAATAGTCA
ATTGTATGAAACTAGTCAATTTTGGTCCTACAAGCAGCTAAGCCGGACCGTATCCCCTGTGCTCC
TTCAGTCGTGGGTAGCTGTTGGTGGGCTTAAAATGTTGGTTACCTCACCCACCCACTTTCACATC
GTACATCATACACCACCAATACCACCAAAACCCAACACACTACAA
Found at i:533007 original size:15 final size:15
Alignment explanation
Indices: 532967--533018 Score: 59
Period size: 15 Copynumber: 3.4 Consensus size: 15
532957 TGTGGGGTAG
*
532967 CCACGTTGTGGAGGA
1 CCACGTTGTGGAGAA
* *
532982 CCATGTCGTGGAGAA
1 CCACGTTGTGGAGAA
*
532997 CCACGTTGTGGGGTAA
1 CCACGTTGTGGAG-AA
533013 CCACGT
1 CCACGT
533019 ACGGTAGAAC
Statistics
Matches: 30, Mismatches: 6, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
15 22 0.73
16 8 0.27
ACGTcount: A:0.21, C:0.23, G:0.35, T:0.21
Consensus pattern (15 bp):
CCACGTTGTGGAGAA
Left flanking sequence: Indices 532467 -- 532966
GACGTGTCCGGGGTGAACCTTTCGGGGGACTGTTCCAACTTGGGGGAAAACACGTCCATCGTACG
TCAACCACCTTTTTCACCACGGCTTTTGTTTTGAATCGGATTACGCGCGCGCGTCCGACGTGATG
GAGAGCGAGGCGCGTGGGTGGTGGGGAGTGGTGGGGGGTGGCGTGCGTGGGGATTGGCGGGTGTA
GGGTGGTTTAGGGTGGTGTAGGGTGGTGTAGGGTGGTGTAGGGTGGTACTGTGGTGAGAGTGGGT
GGTATAGGGTGAGAGTGGGGTGTGCTTAGTGGTTCACTGGTGTACTGATTATTTGATCTTATCAG
ACGCGTGACAGGAAAAGAACCGGGCCTGTTGCTGTGGGCGATGGTCACGGTTGCGGAGTGGGCGA
CATGAGGGGTAGGACAAGGACGTGGGGTGGCCAAGGTTGTGGAGGGATAGAGGGGTAGGACCGTT
TTGTGGGGAGGACCAAGTTGTGGGGAGGACCAAGTTGTGGGGTAG
Right flanking sequence: Indices 533019 -- 533518
ACGGTAGAACCATGTCGTAGGGCACAAGCCATGATGGGTCACCACGTTGTGGGGTAGGACCATGT
TGTAGGGTAGTAGCTAATTGTATGGTGCTAGCCACGATGTACGGTATAAGTGTTGTCTAGGGCAC
TAGCCATAAGCAAGTTAATGGTATTACCCAATTGCATGGTAATAGTCAATTGTATGGAATCAGTC
AATTCTGGTACTAGCCACGGTGTAGGGCATGAGTGTTGTTTAGGGTACTAGCCATAGACTAGTCG
ATTAGATGGCAACAATTGATTGTCTGGTACTAGTCAATTGTATGGTAATAGTCAATTGTATGAAA
CTAGTCAATTTTGGTCCTACAAGCAGCTAAGCCGGACCGTATCCCCTGTGCTCCTTCAGTCGTGG
GTAGCTGTTGGTGGGCTTAAAATGTTGGTTACCTCACCCACCCACTTTCACATCGTACATCATAC
ACCACCAATACCACCAAAACCCAACACACTACAACTGCCACACTC
Found at i:533031 original size:46 final size:46
Alignment explanation
Indices: 532945--533036 Score: 114
Period size: 46 Copynumber: 2.0 Consensus size: 46
532935 CAAGTTGTGG
* * * *
532945 GGAGGACCAAGTTGTGGGGTAGCCACGTTGTGGAGGACCATGTCGT
1 GGAGAACCAAGTTGTGGGGTAACCACGTCGTGGAGAACCATGTCGT
* *
532991 GGAGAACCACGTTGTGGGGTAACCACGTACG-GTAGAACCATGTCGT
1 GGAGAACCAAGTTGTGGGGTAACCACGT-CGTGGAGAACCATGTCGT
533037 AGGGCACAAG
Statistics
Matches: 39, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
46 38 0.97
47 1 0.03
ACGTcount: A:0.23, C:0.20, G:0.37, T:0.21
Consensus pattern (46 bp):
GGAGAACCAAGTTGTGGGGTAACCACGTCGTGGAGAACCATGTCGT
Left flanking sequence: Indices 532445 -- 532944
CTTCTCGTCGGTCAGGTGGTCGGACGTGTCCGGGGTGAACCTTTCGGGGGACTGTTCCAACTTGG
GGGAAAACACGTCCATCGTACGTCAACCACCTTTTTCACCACGGCTTTTGTTTTGAATCGGATTA
CGCGCGCGCGTCCGACGTGATGGAGAGCGAGGCGCGTGGGTGGTGGGGAGTGGTGGGGGGTGGCG
TGCGTGGGGATTGGCGGGTGTAGGGTGGTTTAGGGTGGTGTAGGGTGGTGTAGGGTGGTGTAGGG
TGGTACTGTGGTGAGAGTGGGTGGTATAGGGTGAGAGTGGGGTGTGCTTAGTGGTTCACTGGTGT
ACTGATTATTTGATCTTATCAGACGCGTGACAGGAAAAGAACCGGGCCTGTTGCTGTGGGCGATG
GTCACGGTTGCGGAGTGGGCGACATGAGGGGTAGGACAAGGACGTGGGGTGGCCAAGGTTGTGGA
GGGATAGAGGGGTAGGACCGTTTTGTGGGGAGGACCAAGTTGTGG
Right flanking sequence: Indices 533037 -- 533536
AGGGCACAAGCCATGATGGGTCACCACGTTGTGGGGTAGGACCATGTTGTAGGGTAGTAGCTAAT
TGTATGGTGCTAGCCACGATGTACGGTATAAGTGTTGTCTAGGGCACTAGCCATAAGCAAGTTAA
TGGTATTACCCAATTGCATGGTAATAGTCAATTGTATGGAATCAGTCAATTCTGGTACTAGCCAC
GGTGTAGGGCATGAGTGTTGTTTAGGGTACTAGCCATAGACTAGTCGATTAGATGGCAACAATTG
ATTGTCTGGTACTAGTCAATTGTATGGTAATAGTCAATTGTATGAAACTAGTCAATTTTGGTCCT
ACAAGCAGCTAAGCCGGACCGTATCCCCTGTGCTCCTTCAGTCGTGGGTAGCTGTTGGTGGGCTT
AAAATGTTGGTTACCTCACCCACCCACTTTCACATCGTACATCATACACCACCAATACCACCAAA
ACCCAACACACTACAACTGCCACACTCTAGGCGTTGGGGGGGTCT
Found at i:533085 original size:18 final size:18
Alignment explanation
Indices: 533059--533093 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
533049 ATGATGGGTC
*
533059 ACCACGTTGTGGGGTAGG
1 ACCACGTTGTAGGGTAGG
*
533077 ACCATGTTGTAGGGTAG
1 ACCACGTTGTAGGGTAG
533094 TAGCTAATTG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.20, C:0.14, G:0.40, T:0.26
Consensus pattern (18 bp):
ACCACGTTGTAGGGTAGG
Left flanking sequence: Indices 532559 -- 533058
GTTTTGAATCGGATTACGCGCGCGCGTCCGACGTGATGGAGAGCGAGGCGCGTGGGTGGTGGGGA
GTGGTGGGGGGTGGCGTGCGTGGGGATTGGCGGGTGTAGGGTGGTTTAGGGTGGTGTAGGGTGGT
GTAGGGTGGTGTAGGGTGGTACTGTGGTGAGAGTGGGTGGTATAGGGTGAGAGTGGGGTGTGCTT
AGTGGTTCACTGGTGTACTGATTATTTGATCTTATCAGACGCGTGACAGGAAAAGAACCGGGCCT
GTTGCTGTGGGCGATGGTCACGGTTGCGGAGTGGGCGACATGAGGGGTAGGACAAGGACGTGGGG
TGGCCAAGGTTGTGGAGGGATAGAGGGGTAGGACCGTTTTGTGGGGAGGACCAAGTTGTGGGGAG
GACCAAGTTGTGGGGTAGCCACGTTGTGGAGGACCATGTCGTGGAGAACCACGTTGTGGGGTAAC
CACGTACGGTAGAACCATGTCGTAGGGCACAAGCCATGATGGGTC
Right flanking sequence: Indices 533094 -- 533593
TAGCTAATTGTATGGTGCTAGCCACGATGTACGGTATAAGTGTTGTCTAGGGCACTAGCCATAAG
CAAGTTAATGGTATTACCCAATTGCATGGTAATAGTCAATTGTATGGAATCAGTCAATTCTGGTA
CTAGCCACGGTGTAGGGCATGAGTGTTGTTTAGGGTACTAGCCATAGACTAGTCGATTAGATGGC
AACAATTGATTGTCTGGTACTAGTCAATTGTATGGTAATAGTCAATTGTATGAAACTAGTCAATT
TTGGTCCTACAAGCAGCTAAGCCGGACCGTATCCCCTGTGCTCCTTCAGTCGTGGGTAGCTGTTG
GTGGGCTTAAAATGTTGGTTACCTCACCCACCCACTTTCACATCGTACATCATACACCACCAATA
CCACCAAAACCCAACACACTACAACTGCCACACTCTAGGCGTTGGGGGGGTCTGGGGGGGCGCCG
CTCGCGGCCCCCCCAGCTACAATTCCAGCTTATGTGACCCCACGC
Found at i:533198 original size:18 final size:18
Alignment explanation
Indices: 533177--533217 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
533167 TGGTATTACC
533177 CAATTGCATGGTAAT-AGT
1 CAATTGCATGG-AATCAGT
*
533195 CAATTGTATGGAATCAGT
1 CAATTGCATGGAATCAGT
533213 CAATT
1 CAATT
533218 CTGGTACTAG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 3 0.14
18 18 0.86
ACGTcount: A:0.34, C:0.12, G:0.20, T:0.34
Consensus pattern (18 bp):
CAATTGCATGGAATCAGT
Left flanking sequence: Indices 532677 -- 533176
GTGTAGGGTGGTGTAGGGTGGTGTAGGGTGGTACTGTGGTGAGAGTGGGTGGTATAGGGTGAGAG
TGGGGTGTGCTTAGTGGTTCACTGGTGTACTGATTATTTGATCTTATCAGACGCGTGACAGGAAA
AGAACCGGGCCTGTTGCTGTGGGCGATGGTCACGGTTGCGGAGTGGGCGACATGAGGGGTAGGAC
AAGGACGTGGGGTGGCCAAGGTTGTGGAGGGATAGAGGGGTAGGACCGTTTTGTGGGGAGGACCA
AGTTGTGGGGAGGACCAAGTTGTGGGGTAGCCACGTTGTGGAGGACCATGTCGTGGAGAACCACG
TTGTGGGGTAACCACGTACGGTAGAACCATGTCGTAGGGCACAAGCCATGATGGGTCACCACGTT
GTGGGGTAGGACCATGTTGTAGGGTAGTAGCTAATTGTATGGTGCTAGCCACGATGTACGGTATA
AGTGTTGTCTAGGGCACTAGCCATAAGCAAGTTAATGGTATTACC
Right flanking sequence: Indices 533218 -- 533717
CTGGTACTAGCCACGGTGTAGGGCATGAGTGTTGTTTAGGGTACTAGCCATAGACTAGTCGATTA
GATGGCAACAATTGATTGTCTGGTACTAGTCAATTGTATGGTAATAGTCAATTGTATGAAACTAG
TCAATTTTGGTCCTACAAGCAGCTAAGCCGGACCGTATCCCCTGTGCTCCTTCAGTCGTGGGTAG
CTGTTGGTGGGCTTAAAATGTTGGTTACCTCACCCACCCACTTTCACATCGTACATCATACACCA
CCAATACCACCAAAACCCAACACACTACAACTGCCACACTCTAGGCGTTGGGGGGGTCTGGGGGG
GCGCCGCTCGCGGCCCCCCCAGCTACAATTCCAGCTTATGTGACCCCACGCTGTAGAGTCTAAGC
ATTGTGTAGGGTACTAGCTATAGACTAGCCAATTGTATAGCAATAGTCAATTGTATGATACTAAC
CATTATGGTCTAGCCACGTTTCAGGCACATGCCACGTTTCAGAGA
Found at i:533318 original size:18 final size:18
Alignment explanation
Indices: 533297--533353 Score: 78
Period size: 18 Copynumber: 3.2 Consensus size: 18
533287 GCAACAATTG
*
533297 ATTGTCTGGTACTAGTCA
1 ATTGTATGGTACTAGTCA
*
533315 ATTGTATGGTAATAGTCA
1 ATTGTATGGTACTAGTCA
**
533333 ATTGTATGAAACTAGTCA
1 ATTGTATGGTACTAGTCA
533351 ATT
1 ATT
533354 TTGGTCCTAC
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 34 1.00
ACGTcount: A:0.32, C:0.11, G:0.19, T:0.39
Consensus pattern (18 bp):
ATTGTATGGTACTAGTCA
Left flanking sequence: Indices 532797 -- 533296
TGACAGGAAAAGAACCGGGCCTGTTGCTGTGGGCGATGGTCACGGTTGCGGAGTGGGCGACATGA
GGGGTAGGACAAGGACGTGGGGTGGCCAAGGTTGTGGAGGGATAGAGGGGTAGGACCGTTTTGTG
GGGAGGACCAAGTTGTGGGGAGGACCAAGTTGTGGGGTAGCCACGTTGTGGAGGACCATGTCGTG
GAGAACCACGTTGTGGGGTAACCACGTACGGTAGAACCATGTCGTAGGGCACAAGCCATGATGGG
TCACCACGTTGTGGGGTAGGACCATGTTGTAGGGTAGTAGCTAATTGTATGGTGCTAGCCACGAT
GTACGGTATAAGTGTTGTCTAGGGCACTAGCCATAAGCAAGTTAATGGTATTACCCAATTGCATG
GTAATAGTCAATTGTATGGAATCAGTCAATTCTGGTACTAGCCACGGTGTAGGGCATGAGTGTTG
TTTAGGGTACTAGCCATAGACTAGTCGATTAGATGGCAACAATTG
Right flanking sequence: Indices 533354 -- 533853
TTGGTCCTACAAGCAGCTAAGCCGGACCGTATCCCCTGTGCTCCTTCAGTCGTGGGTAGCTGTTG
GTGGGCTTAAAATGTTGGTTACCTCACCCACCCACTTTCACATCGTACATCATACACCACCAATA
CCACCAAAACCCAACACACTACAACTGCCACACTCTAGGCGTTGGGGGGGTCTGGGGGGGCGCCG
CTCGCGGCCCCCCCAGCTACAATTCCAGCTTATGTGACCCCACGCTGTAGAGTCTAAGCATTGTG
TAGGGTACTAGCTATAGACTAGCCAATTGTATAGCAATAGTCAATTGTATGATACTAACCATTAT
GGTCTAGCCACGTTTCAGGCACATGCCACGTTTCAGAGATCTATCTAGGAGTAGGACAGTGGTTA
TGGAACTCACGATACAACGCATCCCCATGGTACGGTTATGTATCTAGTCGCGTCTAGAAACCTTT
AGTCTAGCGTTACCATTAGCACCCTTATGTCCACCCATCCCTCTC
Found at i:536695 original size:12 final size:13
Alignment explanation
Indices: 536678--536759 Score: 80
Period size: 12 Copynumber: 6.4 Consensus size: 13
536668 CACTCTTTCT
536678 TTGACC-CTCCCA
1 TTGACCTCTCCCA
*
536690 TTGACC-CTCTCA
1 TTGACCTCTCCCA
*
536702 TTGACCTTTTCCCA
1 TTGACC-TCTCCCA
*
536716 TTGACCTTTCCCA
1 TTGACCTCTCCCA
* *
536729 TTGACC-CTCTCT
1 TTGACCTCTCCCA
536741 TTGACCATCTCCCA
1 TTGACC-TCTCCCA
536755 TTGAC
1 TTGAC
536760 TACTTCTATT
Statistics
Matches: 58, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
12 26 0.45
13 13 0.22
14 19 0.33
ACGTcount: A:0.16, C:0.40, G:0.09, T:0.35
Consensus pattern (13 bp):
TTGACCTCTCCCA
Left flanking sequence: Indices 536178 -- 536677
CCGGAGGCGACCGCAGCGGGTCGTTGCCCTTGAGACTGGCGGAGGACGAGGTGTCGCCGTCGCCT
TTGCCCCAGGGCATCCAGTTCAGTCGGCCCATGTGTTTGGTTGCTGTGGTGGGAGCTAAATTTGG
TTGCAGTTTGCTTGTGATATCTCCGCATTTCCTCTGGACCCACGCACGCTATTAACGTTGGGTGG
GTCATAACCAGCGAAAAAATAAACAGAGGTGGGATAGAAGGTAGGGTGGAGGGTGATAGAGGAGT
AGAGTGTGTCAATTGGTATGGCCTAGGCAATTGTAGTTGGCTATGGTGTTTGGTTGCGTTTTCTT
AGTTACGATCGTTGGCCAGTGCTGGGCGGGCCCAACAGGCTGACCTCTCACATGGCACTCGTGGC
TAATGATTGCCCAAACCGGACATGGTGCGAGCATACAATAAGGCAACGAGGTCGCTTCTTTCCGG
GAGAGGGCATTGTTTCTGTTATCAGTAATTCCATTCACTCTTTCT
Right flanking sequence: Indices 536760 -- 537259
TACTTCTATTGCCTTCCGATTGCCACTTCCACTCACGTGCGCAGTCACGTGCCGCGCACGATAAC
CCACCACCACCACCAGTAACCCACCGAGACATGCTGGTGATCTTAGCCCTGGCCGGGTACGACCA
CACCATCCGGTTCTGGGACGCGCTCACGGGCGTGTGTTCCCGGACAATTCTGCACACCGACTCCC
AGGTCAACCGGTTGGAAATCACCAACGACAAGCGCTTTTTGGCCGCCGCCGGGCACATGTACGTG
CGGCTCTACGACATCCGCCAGGGCGGAGCAAGCACGCTGGGTACCCACGGGGCCGCGGGCGGGCA
GGGCTCGGCGGCGGCGTCGGGCCTGCTGGCCAACAACAACAACTCGCAGGCGGTGATGACGTTCG
AGGGCCACACGCTGAACGTGACGCTGTTGCAGTTCCAGGTGGAAAACAAGTGGATGGTGACGCTG
CTGGAGGACGGAATGGTCAAGGTGTGGGACGTGCGCGCGCCGCTG
Found at i:536727 original size:13 final size:13
Alignment explanation
Indices: 536685--536734 Score: 66
Period size: 13 Copynumber: 3.8 Consensus size: 13
536675 TCTTTGACCC
*
536685 TCCCATTGACC-C
1 TCCCATTGACCTT
*
536697 TCTCATTGACCTTT
1 TCCCATTGACC-TT
536711 TCCCATTGACCTT
1 TCCCATTGACCTT
536724 TCCCATTGACC
1 TCCCATTGACC
536735 CTCTCTTTGA
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
12 10 0.30
13 13 0.39
14 10 0.30
ACGTcount: A:0.16, C:0.40, G:0.08, T:0.36
Consensus pattern (13 bp):
TCCCATTGACCTT
Left flanking sequence: Indices 536185 -- 536684
CGACCGCAGCGGGTCGTTGCCCTTGAGACTGGCGGAGGACGAGGTGTCGCCGTCGCCTTTGCCCC
AGGGCATCCAGTTCAGTCGGCCCATGTGTTTGGTTGCTGTGGTGGGAGCTAAATTTGGTTGCAGT
TTGCTTGTGATATCTCCGCATTTCCTCTGGACCCACGCACGCTATTAACGTTGGGTGGGTCATAA
CCAGCGAAAAAATAAACAGAGGTGGGATAGAAGGTAGGGTGGAGGGTGATAGAGGAGTAGAGTGT
GTCAATTGGTATGGCCTAGGCAATTGTAGTTGGCTATGGTGTTTGGTTGCGTTTTCTTAGTTACG
ATCGTTGGCCAGTGCTGGGCGGGCCCAACAGGCTGACCTCTCACATGGCACTCGTGGCTAATGAT
TGCCCAAACCGGACATGGTGCGAGCATACAATAAGGCAACGAGGTCGCTTCTTTCCGGGAGAGGG
CATTGTTTCTGTTATCAGTAATTCCATTCACTCTTTCTTTGACCC
Right flanking sequence: Indices 536735 -- 537234
CTCTCTTTGACCATCTCCCATTGACTACTTCTATTGCCTTCCGATTGCCACTTCCACTCACGTGC
GCAGTCACGTGCCGCGCACGATAACCCACCACCACCACCAGTAACCCACCGAGACATGCTGGTGA
TCTTAGCCCTGGCCGGGTACGACCACACCATCCGGTTCTGGGACGCGCTCACGGGCGTGTGTTCC
CGGACAATTCTGCACACCGACTCCCAGGTCAACCGGTTGGAAATCACCAACGACAAGCGCTTTTT
GGCCGCCGCCGGGCACATGTACGTGCGGCTCTACGACATCCGCCAGGGCGGAGCAAGCACGCTGG
GTACCCACGGGGCCGCGGGCGGGCAGGGCTCGGCGGCGGCGTCGGGCCTGCTGGCCAACAACAAC
AACTCGCAGGCGGTGATGACGTTCGAGGGCCACACGCTGAACGTGACGCTGTTGCAGTTCCAGGT
GGAAAACAAGTGGATGGTGACGCTGCTGGAGGACGGAATGGTCAA
Found at i:536731 original size:39 final size:39
Alignment explanation
Indices: 536685--536759 Score: 123
Period size: 39 Copynumber: 1.9 Consensus size: 39
536675 TCTTTGACCC
* *
536685 TCCCATTGACCCTCTCATTGACCTTTTCCCATTGACCTT
1 TCCCATTGACCCTCTCATTGACCATCTCCCATTGACCTT
*
536724 TCCCATTGACCCTCTCTTTGACCATCTCCCATTGAC
1 TCCCATTGACCCTCTCATTGACCATCTCCCATTGAC
536760 TACTTCTATT
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 33 1.00
ACGTcount: A:0.16, C:0.40, G:0.08, T:0.36
Consensus pattern (39 bp):
TCCCATTGACCCTCTCATTGACCATCTCCCATTGACCTT
Left flanking sequence: Indices 536185 -- 536684
CGACCGCAGCGGGTCGTTGCCCTTGAGACTGGCGGAGGACGAGGTGTCGCCGTCGCCTTTGCCCC
AGGGCATCCAGTTCAGTCGGCCCATGTGTTTGGTTGCTGTGGTGGGAGCTAAATTTGGTTGCAGT
TTGCTTGTGATATCTCCGCATTTCCTCTGGACCCACGCACGCTATTAACGTTGGGTGGGTCATAA
CCAGCGAAAAAATAAACAGAGGTGGGATAGAAGGTAGGGTGGAGGGTGATAGAGGAGTAGAGTGT
GTCAATTGGTATGGCCTAGGCAATTGTAGTTGGCTATGGTGTTTGGTTGCGTTTTCTTAGTTACG
ATCGTTGGCCAGTGCTGGGCGGGCCCAACAGGCTGACCTCTCACATGGCACTCGTGGCTAATGAT
TGCCCAAACCGGACATGGTGCGAGCATACAATAAGGCAACGAGGTCGCTTCTTTCCGGGAGAGGG
CATTGTTTCTGTTATCAGTAATTCCATTCACTCTTTCTTTGACCC
Right flanking sequence: Indices 536760 -- 537259
TACTTCTATTGCCTTCCGATTGCCACTTCCACTCACGTGCGCAGTCACGTGCCGCGCACGATAAC
CCACCACCACCACCAGTAACCCACCGAGACATGCTGGTGATCTTAGCCCTGGCCGGGTACGACCA
CACCATCCGGTTCTGGGACGCGCTCACGGGCGTGTGTTCCCGGACAATTCTGCACACCGACTCCC
AGGTCAACCGGTTGGAAATCACCAACGACAAGCGCTTTTTGGCCGCCGCCGGGCACATGTACGTG
CGGCTCTACGACATCCGCCAGGGCGGAGCAAGCACGCTGGGTACCCACGGGGCCGCGGGCGGGCA
GGGCTCGGCGGCGGCGTCGGGCCTGCTGGCCAACAACAACAACTCGCAGGCGGTGATGACGTTCG
AGGGCCACACGCTGAACGTGACGCTGTTGCAGTTCCAGGTGGAAAACAAGTGGATGGTGACGCTG
CTGGAGGACGGAATGGTCAAGGTGTGGGACGTGCGCGCGCCGCTG
Found at i:538008 original size:16 final size:16
Alignment explanation
Indices: 537987--538030 Score: 79
Period size: 16 Copynumber: 2.8 Consensus size: 16
537977 ACTGGTTTTC
537987 GCCGGGTTGGTAGTCA
1 GCCGGGTTGGTAGTCA
*
538003 GCCGGGTTGGTTGTCA
1 GCCGGGTTGGTAGTCA
538019 GCCGGGTTGGTA
1 GCCGGGTTGGTA
538031 ATCGACCGAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 26 1.00
ACGTcount: A:0.09, C:0.18, G:0.45, T:0.27
Consensus pattern (16 bp):
GCCGGGTTGGTAGTCA
Left flanking sequence: Indices 537487 -- 537986
CGTGTGGAAGATGCACAACCAAAAGGACACCACCCAGTTGACGCCGGTGACCAAGTTCCGGCTGC
ACTCCAAGTACATCACCCGGGTGTTGTTGCTGACGGACATGAAGCACTTGGCCACCTGTAGTGCC
GACCACACCGCGCGCATCTGGCTGGCGGAGCAGAACTTCAAGTTGGAGACGACGTTGCAGGGCCA
CCAGCGGTGGGTGTGGGACTGTGCGTTCAGCGCGGACTCGGCGTACTTGGTGACGGCGTGTTCCG
ACCACTACGTGCGGTTGTGGGACTTGTCCAACTCGGAGACGGTGCGGCAGTACAACGGGCACCAC
AAGGGGGCGGTGTGCGTGGCGTTGAACGATGTGTGAGAGAATGGTAGTGGTCTACAAGGGAGAAA
TAGCGAGATGTTTATCGAGCGAGTGGTCTACAATTGGTTTCGAGAAATATCCAGGCGAGATGGTA
ATCGAGCGAGATGGTATTTGAGTTGGTAATCAGCCACTGGTTTTC
Right flanking sequence: Indices 538031 -- 538530
ATCGACCGAAAACGTACTCAAGCCTGTTAGTCAATCGAGTGGGTAGCAAGTGAGGTGGTGAACAA
GCGAGGTGGTAAGTGATATATTTACCAAACGAGGTGGTAATCGAGAAGGTAAGTGAGATAGTCAC
CAAGAGAGGTAAGTGGGTTGATAATCATCCTAATTGGTAAGCATATGCGTTGGTAATGTACCGGT
ATGGCAAGTGAGTTGATAATTTGATAAGCAAGCTGATCATCCGAACCTATCAGACTACCCAGCTC
GTTACGCCCAATGCTTCTTCATGAGTCCTACTACTTGACTTCTGAACCACTGCGATCATTCTCAC
CTTCTGTCATTCCCACCTGCCATCATTCCCATTTTTTCCACCTTCCAATTACCACCTTCCCATTA
CCACCTTCCCATTACCACCTGCCCTTTTCACCGCCTGCCATCTAAACCACCCACCATTCACCCTG
CGTCTTAACCATCCCACACGCATCCAACCACCCAACCACCCTCCC
Found at i:538412 original size:14 final size:14
Alignment explanation
Indices: 538393--538440 Score: 87
Period size: 14 Copynumber: 3.4 Consensus size: 14
538383 CCCATTTTTT
*
538393 CCACCTTCCAATTA
1 CCACCTTCCCATTA
538407 CCACCTTCCCATTA
1 CCACCTTCCCATTA
538421 CCACCTTCCCATTA
1 CCACCTTCCCATTA
538435 CCACCT
1 CCACCT
538441 GCCCTTTTCA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
14 33 1.00
ACGTcount: A:0.23, C:0.50, G:0.00, T:0.27
Consensus pattern (14 bp):
CCACCTTCCCATTA
Left flanking sequence: Indices 537893 -- 538392
GAGCGAGTGGTCTACAATTGGTTTCGAGAAATATCCAGGCGAGATGGTAATCGAGCGAGATGGTA
TTTGAGTTGGTAATCAGCCACTGGTTTTCGCCGGGTTGGTAGTCAGCCGGGTTGGTTGTCAGCCG
GGTTGGTAATCGACCGAAAACGTACTCAAGCCTGTTAGTCAATCGAGTGGGTAGCAAGTGAGGTG
GTGAACAAGCGAGGTGGTAAGTGATATATTTACCAAACGAGGTGGTAATCGAGAAGGTAAGTGAG
ATAGTCACCAAGAGAGGTAAGTGGGTTGATAATCATCCTAATTGGTAAGCATATGCGTTGGTAAT
GTACCGGTATGGCAAGTGAGTTGATAATTTGATAAGCAAGCTGATCATCCGAACCTATCAGACTA
CCCAGCTCGTTACGCCCAATGCTTCTTCATGAGTCCTACTACTTGACTTCTGAACCACTGCGATC
ATTCTCACCTTCTGTCATTCCCACCTGCCATCATTCCCATTTTTT
Right flanking sequence: Indices 538441 -- 538940
GCCCTTTTCACCGCCTGCCATCTAAACCACCCACCATTCACCCTGCGTCTTAACCATCCCACACG
CATCCAACCACCCAACCACCCTCCCACTAACCACCCCACCATTCAACCTGCCACTCATTCCCCCT
ACCCTCATTATGCATGCATTCCAAACCGTGCTATAAAAATCCTATATAAATGACCCGTTATAAAT
ATTCTATCCAAAAAAGTTTTCCACCTTGGCTTCGTAGTTGAGGAGCACGTCGTTGGGAACACCAC
CCACGCCGTCGTCCTTGCCACCGCCAGTGGCACTGTCGATACCAAGAGAAAAGTCCATCAAGTCA
ACGGTGCCAAACAGCAAGTTGCCACTCAGCGCGTCGGCGCCGCCGTCGCCCGAGGGCTCGCCCGC
ACCGTCGCCGTGGGCAAAGTCCTCGATCGCCACCGGAGCGTCGCCAATGTCGTCCACGGGATGCA
GCATCTGCGCCTCGGGAGCCGGTGCTGGTGCGTGCCGCGGGGTGC
Found at i:538419 original size:31 final size:31
Alignment explanation
Indices: 538381--538448 Score: 81
Period size: 28 Copynumber: 2.3 Consensus size: 31
538371 CCTGCCATCA
*
538381 TTCCCATTTTTTCCACCTTCCAATTACCACC
1 TTCCCATTTTTACCACCTTCCAATTACCACC
*
538412 TTCCCA---TTACCACCTTCCCATTACCACC
1 TTCCCATTTTTACCACCTTCCAATTACCACC
*
538440 TGCCC-TTTT
1 TTCCCATTTT
538449 CACCGCCTGC
Statistics
Matches: 31, Mismatches: 3, Indels: 7
0.76 0.07 0.17
Matches are distributed among these distances:
28 24 0.77
30 1 0.03
31 6 0.19
ACGTcount: A:0.18, C:0.44, G:0.01, T:0.37
Consensus pattern (31 bp):
TTCCCATTTTTACCACCTTCCAATTACCACC
Left flanking sequence: Indices 537881 -- 538380
GAGATGTTTATCGAGCGAGTGGTCTACAATTGGTTTCGAGAAATATCCAGGCGAGATGGTAATCG
AGCGAGATGGTATTTGAGTTGGTAATCAGCCACTGGTTTTCGCCGGGTTGGTAGTCAGCCGGGTT
GGTTGTCAGCCGGGTTGGTAATCGACCGAAAACGTACTCAAGCCTGTTAGTCAATCGAGTGGGTA
GCAAGTGAGGTGGTGAACAAGCGAGGTGGTAAGTGATATATTTACCAAACGAGGTGGTAATCGAG
AAGGTAAGTGAGATAGTCACCAAGAGAGGTAAGTGGGTTGATAATCATCCTAATTGGTAAGCATA
TGCGTTGGTAATGTACCGGTATGGCAAGTGAGTTGATAATTTGATAAGCAAGCTGATCATCCGAA
CCTATCAGACTACCCAGCTCGTTACGCCCAATGCTTCTTCATGAGTCCTACTACTTGACTTCTGA
ACCACTGCGATCATTCTCACCTTCTGTCATTCCCACCTGCCATCA
Right flanking sequence: Indices 538449 -- 538948
CACCGCCTGCCATCTAAACCACCCACCATTCACCCTGCGTCTTAACCATCCCACACGCATCCAAC
CACCCAACCACCCTCCCACTAACCACCCCACCATTCAACCTGCCACTCATTCCCCCTACCCTCAT
TATGCATGCATTCCAAACCGTGCTATAAAAATCCTATATAAATGACCCGTTATAAATATTCTATC
CAAAAAAGTTTTCCACCTTGGCTTCGTAGTTGAGGAGCACGTCGTTGGGAACACCACCCACGCCG
TCGTCCTTGCCACCGCCAGTGGCACTGTCGATACCAAGAGAAAAGTCCATCAAGTCAACGGTGCC
AAACAGCAAGTTGCCACTCAGCGCGTCGGCGCCGCCGTCGCCCGAGGGCTCGCCCGCACCGTCGC
CGTGGGCAAAGTCCTCGATCGCCACCGGAGCGTCGCCAATGTCGTCCACGGGATGCAGCATCTGC
GCCTCGGGAGCCGGTGCTGGTGCGTGCCGCGGGGTGCGGTGGGCC
Found at i:543292 original size:14 final size:14
Alignment explanation
Indices: 543273--543304 Score: 64
Period size: 14 Copynumber: 2.3 Consensus size: 14
543263 GGTGGACTCG
543273 GTAGACTATTTGGT
1 GTAGACTATTTGGT
543287 GTAGACTATTTGGT
1 GTAGACTATTTGGT
543301 GTAG
1 GTAG
543305 CTGCTAGTGT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.22, C:0.06, G:0.31, T:0.41
Consensus pattern (14 bp):
GTAGACTATTTGGT
Left flanking sequence: Indices 542773 -- 543272
GGACACCGGGGTGTTTGTCAAGGCCAACGACTCCACCATCGGGTTGTTGGGCTACATCGCGCCCT
ACATCATGGTGGGCGAGCCTCTGCACGCGCTGGTGCGTAAGTTGTTCCAGAAGCGGGGCCGCTAC
ACCACCCCCGAGGGCGAGGTGGCCAAGCTCGACAACAACCAGGCGGTGGAGGACAAGTTCGAGGA
CGACTTGGGGCTCATCTGTATCGAGGACGTCATTCACGAGTTGACTTCGTTGAGCGACAACTTCA
ACACCATCACCCTGTGGTTGTTGCCGTTCAAGTTGAACGCCCCCGTCAACGGGTGGTCCCCGCGG
GCTAAGCTCGCCAAGTTGATGCATCAAGAAGCCAACAAGCGGTCGATCTCGATGGCGCGCGACTT
CCGGTTGCAGGAGGTCGACGACATCGATGGCATTATTGAAACTCAAAACTAATCTCTGTACACTA
GCAATTAAGGTTATCTGGAATGAACATCTCATTAAGGTGGACTCG
Right flanking sequence: Indices 543305 -- 543804
CTGCTAGTGTGGCTAGTGTGGCTAGTGTAGCTACTTGTGTAGACTTATTTAGTCTACCTACTTGT
GTAGCTAGCTACTTTTTGCACCCAAGTGCGGCTTATGCAAAGATGTTCTAATGACTATACGAGTT
CTCTCTTCAACCGCAAAAGGTTCTTGCGGTCACGCTCGAGCTGCTTGCGCTCGATCTTGGCCATG
GCTGCCAACCGGATGCGTTCGCCGTACTTGTAGCACATGATGGGGTACCCGATCAACAACAACGC
AATCAACCCGCACATGGTGTTGCTCCACCCGTACCCCATCAGCGCGTACATCTTCGGGGCAAACA
ACGGGAAGGTGAAGCCAAAGAGCGACCGGAACATCGCGGCCGCGGCCACCGTCAGCGCCGAGAAG
TTGATGATGATCTCGGTGCCCTCGTCGTTGCGGGTGCGGTGAATCAGCATGTCAATAAAGTAGGA
CTGACTCAGCTGGAACAAGCACACAAGCCCAAACGCAAACAACCC
Found at i:543321 original size:9 final size:9
Alignment explanation
Indices: 543307--543337 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
543297 TGGTGTAGCT
543307 GCTAGTGTG
1 GCTAGTGTG
543316 GCTAGTGTG
1 GCTAGTGTG
*
543325 GCTAGTGTA
1 GCTAGTGTG
543334 GCTA
1 GCTA
543338 CTTGTGTAGA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.16, C:0.13, G:0.39, T:0.32
Consensus pattern (9 bp):
GCTAGTGTG
Left flanking sequence: Indices 542807 -- 543306
ACCATCGGGTTGTTGGGCTACATCGCGCCCTACATCATGGTGGGCGAGCCTCTGCACGCGCTGGT
GCGTAAGTTGTTCCAGAAGCGGGGCCGCTACACCACCCCCGAGGGCGAGGTGGCCAAGCTCGACA
ACAACCAGGCGGTGGAGGACAAGTTCGAGGACGACTTGGGGCTCATCTGTATCGAGGACGTCATT
CACGAGTTGACTTCGTTGAGCGACAACTTCAACACCATCACCCTGTGGTTGTTGCCGTTCAAGTT
GAACGCCCCCGTCAACGGGTGGTCCCCGCGGGCTAAGCTCGCCAAGTTGATGCATCAAGAAGCCA
ACAAGCGGTCGATCTCGATGGCGCGCGACTTCCGGTTGCAGGAGGTCGACGACATCGATGGCATT
ATTGAAACTCAAAACTAATCTCTGTACACTAGCAATTAAGGTTATCTGGAATGAACATCTCATTA
AGGTGGACTCGGTAGACTATTTGGTGTAGACTATTTGGTGTAGCT
Right flanking sequence: Indices 543338 -- 543837
CTTGTGTAGACTTATTTAGTCTACCTACTTGTGTAGCTAGCTACTTTTTGCACCCAAGTGCGGCT
TATGCAAAGATGTTCTAATGACTATACGAGTTCTCTCTTCAACCGCAAAAGGTTCTTGCGGTCAC
GCTCGAGCTGCTTGCGCTCGATCTTGGCCATGGCTGCCAACCGGATGCGTTCGCCGTACTTGTAG
CACATGATGGGGTACCCGATCAACAACAACGCAATCAACCCGCACATGGTGTTGCTCCACCCGTA
CCCCATCAGCGCGTACATCTTCGGGGCAAACAACGGGAAGGTGAAGCCAAAGAGCGACCGGAACA
TCGCGGCCGCGGCCACCGTCAGCGCCGAGAAGTTGATGATGATCTCGGTGCCCTCGTCGTTGCGG
GTGCGGTGAATCAGCATGTCAATAAAGTAGGACTGACTCAGCTGGAACAAGCACACAAGCCCAAA
CGCAAACAACCCCAGCCCGATCCCGGGCATGATCCAGTGGAGTCT
Found at i:584324 original size:12 final size:12
Alignment explanation
Indices: 584303--584346 Score: 79
Period size: 12 Copynumber: 3.7 Consensus size: 12
584293 TTCGTTATTT
*
584303 TCGTCTTCTTCG
1 TCGTCCTCTTCG
584315 TCGTCCTCTTCG
1 TCGTCCTCTTCG
584327 TCGTCCTCTTCG
1 TCGTCCTCTTCG
584339 TCGTCCTC
1 TCGTCCTC
584347 GTTTTCACTC
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
12 31 1.00
ACGTcount: A:0.00, C:0.41, G:0.16, T:0.43
Consensus pattern (12 bp):
TCGTCCTCTTCG
Left flanking sequence: Indices 583803 -- 584302
CCAACTGGTCCAAATCGAGCTGTTTCTTTCGCCCCTTGCCCTTGGTGCGAACCGTACGGGTCAAT
GGCGGGTCCGACGACTGGAACGACTTGTTGGAGGCAAGCGTCATGAGCATGTCCAAGTTCTCGTC
GTCGAAGCTGTCGTCGGAGTCGGACTCTGACGAGGTCTCAGAGATGTAGACGTCCGAGTAGTCGG
GCTGGTCGTCCACGGGCTGCAGAGCGAGGAGATCTCCGCACATGTACTTGAGGAAGCTCTGGAAG
CGGGCGGGCAGGACTCCGTTCCCACACACGTACTCGTAGAGCTCGTCTTCGTCGATCCAGGCAAA
ACTGGTGTCGTCGCCACTGAGGTCAACGTTGCGGAGGTAGTACTGGTTGGTGATGCCAAACCGCA
CGTTGGTGATGGAGATGGAGGACACGTCAAACGCGAAGTCGTCCGGGTGGAACCCGTACTCCGGA
GTGGGGTCCTCAGCCTCGTCGTTTTCTTCGTCATTTTCGTTATTT
Right flanking sequence: Indices 584347 -- 584846
GTTTTCACTCTCAGCCATCTCATCAAAGTTCGTCTCGCTGTCGTAGACATCGTCGTCGTCGGAAG
CCACCCCACCCATGATGTTCTGAATGTAGTCGCGGTAGCCCACTTCCTCGTCTGAGTCCACCTGG
TCCTCGATCACCAACTCCGGAAGCTTCAGGGCCCGAACCCGCAGAGCCCGCTCAAGCTGTCCAAA
GTCGACCACGGGGCCGTCGTCGGTCATGGTGGTGCGCAAAAGCGTTTTTCCCACAGCAAAGTAGG
GGTCGTGCTCAAGCGTGTTGAACCGAATCGCCTTCAGTTTGTTGGGACGCTCGTAGCTCACCTCG
CGACACTCCCGCACAAGCGAGGGGTCGGGCTGGTCGTCCATGATGAGCACGTCGTCAAGGTCGAT
CTCGGTGGTCTCAGCCGGGATTTGCAGAGTCTCTTCCGCCATTTCTTCGTCCGCCTCATCGTCCT
CGTCCTTGGATTCACTCACCTCCTTCTGAGATTCACTGTCCATTA
Found at i:585453 original size:16 final size:16
Alignment explanation
Indices: 585432--585480 Score: 71
Period size: 16 Copynumber: 3.1 Consensus size: 16
585422 ACATAGCTGC
* *
585432 TTGAATAGTGAACTTT
1 TTGAATAGTGTACTTG
585448 TTGAATAGTGTACTTG
1 TTGAATAGTGTACTTG
*
585464 TTGATTAGTGTACTTG
1 TTGAATAGTGTACTTG
585480 T
1 T
585481 AGATTGGGTA
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 30 1.00
ACGTcount: A:0.24, C:0.06, G:0.22, T:0.47
Consensus pattern (16 bp):
TTGAATAGTGTACTTG
Left flanking sequence: Indices 584932 -- 585431
CTCCCGCCGAAGCCTCAGGGCCTCCACTTGCTTGTACAATTCTGCGCTCGGGTCATACACGTGTT
TGGCCTTGACAAACTCCACGGGCCGCAGACGCAACAGCTTGCGCATCGTTTGCTCGGTGTGGCTC
GCGGTGTACTCAGCCTCCTGGGCCATCCGTCCGGGCCGGCGTCCGTAGTACGCAAACGTGTTTGG
CTTGGGCTCCGATAAGTCGTCGAACTCGGGCATGGCGTGTCGAACCGGGGCTCCCGGACGCTTCT
TTTTCTGGGGGTTGGGCCGTCCATAGTTTGAGCGGGCCTTGCCACGGCTACTCAGACCACCACGT
CCTCCTCGCCTTCCTTTTCCTCGTCCTGGCATGGGTGGTTTGCCGTTGATCTATGAGTTAGGTTG
ATATGCAGGCGCGATGTCACTTGCGAAGCTTGAGCCGCACCAACGGCTGCAACGGAGTACGGGCG
AGATAACGATTACGACGGCAGGTTCTACGAAACAGACATAGCTGC
Right flanking sequence: Indices 585481 -- 585980
AGATTGGGTATTTATCGGTAGACTTTGGACTCTTTAGTAGTCTCTCCAGTACCACCACACGTTGT
GCAATCTGCCGGTGCTAAGGTTCTCGAGCTGCTTGAACGCGTGCTCGGAGAGGTCAATCAGGTTG
ATGTCGCACCCCTCACAGATGTCGGCGACCCGGACAGTCACCAGCTTGTCCCAGTGGTTCACCAC
GAGGTACTGGTTGTTGCACATCCAGGCGTCGTTGGGGTTGGCAGGGGCACCCAAGCTGTTCCAGA
GCTGGCGCGAGATGGCCACAAAGTCGTCGTTTTGGGTGTCGAGGTCCTGTCCGCAGGCACCCAAA
CCACCCTGGTAGTAGGTGACATCGCCCCACCGGTCGTCGCGTCTCTTGGCGAGCAGACCGTCAGA
GTCCACGGGCTGCGAAAACGCCAAGGAAGCAAGGGAAGAGAGAGTAGCGAGCGAGAGTTTCATGG
TGGGTGGAGACAAAGCCCAGGATGCCAGCCCATTTTATAGCAAAA
Found at i:585485 original size:16 final size:16
Alignment explanation
Indices: 585453--585485 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
585443 ACTTTTTGAA
*
585453 TAGTGTACTTGTTGAT
1 TAGTGTACTTGTAGAT
585469 TAGTGTACTTGTAGAT
1 TAGTGTACTTGTAGAT
585485 T
1 T
585486 GGGTATTTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.21, C:0.06, G:0.24, T:0.48
Consensus pattern (16 bp):
TAGTGTACTTGTAGAT
Left flanking sequence: Indices 584953 -- 585452
CTCCACTTGCTTGTACAATTCTGCGCTCGGGTCATACACGTGTTTGGCCTTGACAAACTCCACGG
GCCGCAGACGCAACAGCTTGCGCATCGTTTGCTCGGTGTGGCTCGCGGTGTACTCAGCCTCCTGG
GCCATCCGTCCGGGCCGGCGTCCGTAGTACGCAAACGTGTTTGGCTTGGGCTCCGATAAGTCGTC
GAACTCGGGCATGGCGTGTCGAACCGGGGCTCCCGGACGCTTCTTTTTCTGGGGGTTGGGCCGTC
CATAGTTTGAGCGGGCCTTGCCACGGCTACTCAGACCACCACGTCCTCCTCGCCTTCCTTTTCCT
CGTCCTGGCATGGGTGGTTTGCCGTTGATCTATGAGTTAGGTTGATATGCAGGCGCGATGTCACT
TGCGAAGCTTGAGCCGCACCAACGGCTGCAACGGAGTACGGGCGAGATAACGATTACGACGGCAG
GTTCTACGAAACAGACATAGCTGCTTGAATAGTGAACTTTTTGAA
Right flanking sequence: Indices 585486 -- 585985
GGGTATTTATCGGTAGACTTTGGACTCTTTAGTAGTCTCTCCAGTACCACCACACGTTGTGCAAT
CTGCCGGTGCTAAGGTTCTCGAGCTGCTTGAACGCGTGCTCGGAGAGGTCAATCAGGTTGATGTC
GCACCCCTCACAGATGTCGGCGACCCGGACAGTCACCAGCTTGTCCCAGTGGTTCACCACGAGGT
ACTGGTTGTTGCACATCCAGGCGTCGTTGGGGTTGGCAGGGGCACCCAAGCTGTTCCAGAGCTGG
CGCGAGATGGCCACAAAGTCGTCGTTTTGGGTGTCGAGGTCCTGTCCGCAGGCACCCAAACCACC
CTGGTAGTAGGTGACATCGCCCCACCGGTCGTCGCGTCTCTTGGCGAGCAGACCGTCAGAGTCCA
CGGGCTGCGAAAACGCCAAGGAAGCAAGGGAAGAGAGAGTAGCGAGCGAGAGTTTCATGGTGGGT
GGAGACAAAGCCCAGGATGCCAGCCCATTTTATAGCAAAAGCCAG
Found at i:587650 original size:21 final size:21
Alignment explanation
Indices: 587621--587663 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
587611 TTGGTGGCCG
587621 GCAGAGCCTTGGGAGCGGGCA
1 GCAGAGCCTTGGGAGCGGGCA
* * *
587642 GCAGCGCCTTGGGTGCTGGCA
1 GCAGAGCCTTGGGAGCGGGCA
587663 G
1 G
587664 TTCCCGTTTG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.14, C:0.26, G:0.47, T:0.14
Consensus pattern (21 bp):
GCAGAGCCTTGGGAGCGGGCA
Left flanking sequence: Indices 587121 -- 587620
GAGCCCGAGCCAGTGGGTCTTCTTCTGCGAGAGCAGCGTCCGCAACGCCTCGCGCTGGTCGTGGG
AAAGCAGCTCGAGCGTGGCCACGAGCTCGGGCCGCTTGGGAAGGCCCGGGTTGGGCGACGGCGAC
GGCGCGTGCGCCAGATACGCCACTTCCTTGGGCCGTTTGTCGACAAACTCGCGTTCTAGCAGCGG
GGTGAGCTTTTCTGGTGGTGCTAGCGACGGCGACGCTGCCGCCGACACCGGGGTGGCCCCGCGGA
TGCCGAGCCCGGCCAACTTGACCGGCAGTTTGAGCTTGTTTTTGAGCCGCAGCCGGTAGTGGGCA
GGGTCTATGGTGATGCGAACGAGAAAGCGTGGTTTCAGCGCGTCCATCTGGTTGATGAACTTGAC
CGAGGGCTTGGAGGGCCGCGGCAGCAGCGACTTGGGCGCCGGCAGCAGCAGTTTGGGAAGCGGCA
GGGCCACCGACTTGGGCACGGGCAGAGCCACCAGCTTGGTGGCCG
Right flanking sequence: Indices 587664 -- 588163
TTCCCGTTTGGGCAGCGGAGGCAGGGTTAGCGGCTTTTCGGGGGGCAGCACCGAGAACATGGGGG
GTAGGGTGGGCAGGAGGAGCGACATTGGCTCGCCCGACAGGTCGTCCTCGCGCTTGGGAAGCGTG
GGCAGCAAGATCGGCGGAAGCTCTCCCGACTCCTGGTAGGCGTGGATGAGGGCGTCCAAGTTCCA
CAGTTTCTTCGGGGCCAGGGCCACCGGCGGCGCCTTGGCCCGCTTGGCGCCCGCCAGGTACACCG
CTGGTGTTCGTTTGGGCTTGGCGGGTTTGCTTTCGCTGAAGATGGACGACTTCATTGTGCCATAG
CGGGCTACGCGGGCGGGTGGAAAATATGTGTGGGGTGCGAGCCGGTGGGACGGCGGCGGGGCGGG
TGGCCGGTGGGAGAGGGTGGGTGGTGTGGGGGACGTGTGGAGTGGTTAGTTTAGAGGTTTTTAGG
CGATTTGGGTGGTGTTTACGTGGGTGGGTGTTGTTTAGGTTGTGT
Found at i:588148 original size:19 final size:20
Alignment explanation
Indices: 588124--588169 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 20
588114 TTAGGCGATT
588124 TGGGTGGTGTTTACG-TGGG
1 TGGGTGGTGTTTACGTTGGG
* * *
588143 TGGGTGTTGTTTAGGTTGTG
1 TGGGTGGTGTTTACGTTGGG
588163 TGGGTGG
1 TGGGTGG
588170 AGGTGACTGT
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
19 13 0.59
20 9 0.41
ACGTcount: A:0.04, C:0.02, G:0.52, T:0.41
Consensus pattern (20 bp):
TGGGTGGTGTTTACGTTGGG
Left flanking sequence: Indices 587624 -- 588123
GAGCCTTGGGAGCGGGCAGCAGCGCCTTGGGTGCTGGCAGTTCCCGTTTGGGCAGCGGAGGCAGG
GTTAGCGGCTTTTCGGGGGGCAGCACCGAGAACATGGGGGGTAGGGTGGGCAGGAGGAGCGACAT
TGGCTCGCCCGACAGGTCGTCCTCGCGCTTGGGAAGCGTGGGCAGCAAGATCGGCGGAAGCTCTC
CCGACTCCTGGTAGGCGTGGATGAGGGCGTCCAAGTTCCACAGTTTCTTCGGGGCCAGGGCCACC
GGCGGCGCCTTGGCCCGCTTGGCGCCCGCCAGGTACACCGCTGGTGTTCGTTTGGGCTTGGCGGG
TTTGCTTTCGCTGAAGATGGACGACTTCATTGTGCCATAGCGGGCTACGCGGGCGGGTGGAAAAT
ATGTGTGGGGTGCGAGCCGGTGGGACGGCGGCGGGGCGGGTGGCCGGTGGGAGAGGGTGGGTGGT
GTGGGGGACGTGTGGAGTGGTTAGTTTAGAGGTTTTTAGGCGATT
Right flanking sequence: Indices 588170 -- 588669
AGGTGACTGTCTCGGTGTCTCATTTCAGCCACAAAAGCGTGTATGCTCGTGGGCCGAAAGGGATA
GTATTAGCGGTCGGGCGAGATGGGCCCATGGCTGCGAGAGCGCGGAGGACGGGTGGTAGAGGATG
TAGTACGGTGGCGGGGGCCTGTGTGCATTGTTAGTAAGGTACGACGGCTCTTTTGCAGTACTAGA
CAAGGCTACATAAGCGAGAACACGGACAAGCGCACAAGCGCACCAGCGCACTAGCAGACCAGCAG
ACCAGCAAGCCAACACATCACTACACTATCACACTATCACACTTCCGTGCAACCGCCCACACCAC
TCTACCGGCCTACACCTTTCAACCCTCCACCTTCCACTCTCACTCCGTCTCTTCCTGCGCATAAA
ACCGATGCACCACACATCCCACCACCATGAAGCTGTACGAAGTGACCCCAGCCAAGCTAGGTAAG
AAGCGCCCCGCACCCAAGGACGTGCCCGGTAAGGAATGGCCCCCC
Found at i:590059 original size:9 final size:9
Alignment explanation
Indices: 590047--590176 Score: 80
Period size: 9 Copynumber: 14.4 Consensus size: 9
590037 GAAGCAATTA
590047 AGGCCATTG
1 AGGCCATTG
590056 AGGCCATTG
1 AGGCCATTG
*
590065 AGACCATTG
1 AGGCCATTG
* *
590074 AGACCAATG
1 AGGCCATTG
* * *
590083 AGACTAGTG
1 AGGCCATTG
* **
590092 AAGCTGTTG
1 AGGCCATTG
590101 AGGCCATTG
1 AGGCCATTG
*
590110 AAGCCATTG
1 AGGCCATTG
*
590119 AAGCCATTG
1 AGGCCATTG
* *
590128 AGGCTAATG
1 AGGCCATTG
* *
590137 AGGCTAATG
1 AGGCCATTG
*
590146 GGGCCATTG
1 AGGCCATTG
* *
590155 ACGCGATTG
1 AGGCCATTG
**
590164 AATCCATTG
1 AGGCCATTG
590173 AGGC
1 AGGC
590177 TAATGAGGCA
Statistics
Matches: 95, Mismatches: 26, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
9 95 1.00
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.22
Consensus pattern (9 bp):
AGGCCATTG
Left flanking sequence: Indices 589547 -- 590046
CCAAGCACCAGAAACTCGTGTTCAACTTGCAGGAGCGGTTGTTTACGCTTCTGTCGCAGATGGCG
GCGCTCGAGTACCACCTGTACTTTGACGGTCTCAAGCGGTTTGTCCAGATGTCGAAGGACCGCAA
CGTGCCGCTCGCGGGGCTTACGGCGACCCGGATGTCCCACAAGTTCCGTGTCCGGTCGCTCGCAG
CGATGACGGCCGCTTACCGCAAGTTGGGTGCGGCTTTCATTGAGCACGAGCTTGGGCTCGAGGGA
GGCGAGTTGGAAAAGTTTTTGCGGAAGGAAAAGCTCGAGGGGTACGTGCAAGCGGGCGAGCTCGA
CTGTGTGGCGTGTCGCCAGCCGCTCCTGAGCCTAGTGGCCAGCCCGCTGTTTGCGAAGGTGGACA
TCAAGGGCCAGCGATAATACTAACCAGCAGGAAGAAGATAGCACTCAAGAAGGATCTAAGCATGG
AAGGCTAAGAAAGAAGATAAGGGATTGAAGCAATTGAAGCAATTA
Right flanking sequence: Indices 590177 -- 590676
TAATGAGGCAACGAGGCAACGAGGCAATGAGGCAAATGAGGCAAATGAGGCGATTATGGCCATCG
AGGCCATTGAAACCAGGTAAGTGTATGACAGATTGAAGAAGTTCAAAGGGATTCCGAGAAAAAGG
GATAGCAATTGAGAGGAGACCAAACAAATGAAGGCAATTGTGACACGGTAATTGCTAATCCCTTG
CAACCCAGCCAAATACGCCGATGCCAACCCTGATTACCGTGGAATGAAACCACACCACATACAAA
CTACGTTGAAACCACCAGGGCCCTAACCATATCTAGACCTCCTATATTAATTCACTATCTAATCG
AGCGACGGGCCGATCGCCATGATCGCAAAGTTGTTTTTGTTGCCGTCATCGGTGTTGTCCATGTA
GAACTGGATCTTCTCCGCCACCTTGGGGTCGGAAATGAGGTGGTTGTTCTCCGCAGTGCACTCTC
CAAGGTCGACAGGGCCCGCACGACGCCCGTCCAACTCGTACAAAT
Found at i:590139 original size:36 final size:36
Alignment explanation
Indices: 590112--590185 Score: 85
Period size: 36 Copynumber: 2.1 Consensus size: 36
590102 GGCCATTGAA
* * *
590112 GCCATTGAAGCCATTGAGGCTAATGAGGCTAATGGG
1 GCCATTGAAGCCATTGAAGCCAATGAGGCTAATGAG
* * * *
590148 GCCATTGACGCGATTGAATCCATTGAGGCTAATGAG
1 GCCATTGAAGCCATTGAAGCCAATGAGGCTAATGAG
590184 GC
1 GC
590186 AACGAGGCAA
Statistics
Matches: 31, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
36 31 1.00
ACGTcount: A:0.27, C:0.19, G:0.31, T:0.23
Consensus pattern (36 bp):
GCCATTGAAGCCATTGAAGCCAATGAGGCTAATGAG
Left flanking sequence: Indices 589612 -- 590111
GCGCTCGAGTACCACCTGTACTTTGACGGTCTCAAGCGGTTTGTCCAGATGTCGAAGGACCGCAA
CGTGCCGCTCGCGGGGCTTACGGCGACCCGGATGTCCCACAAGTTCCGTGTCCGGTCGCTCGCAG
CGATGACGGCCGCTTACCGCAAGTTGGGTGCGGCTTTCATTGAGCACGAGCTTGGGCTCGAGGGA
GGCGAGTTGGAAAAGTTTTTGCGGAAGGAAAAGCTCGAGGGGTACGTGCAAGCGGGCGAGCTCGA
CTGTGTGGCGTGTCGCCAGCCGCTCCTGAGCCTAGTGGCCAGCCCGCTGTTTGCGAAGGTGGACA
TCAAGGGCCAGCGATAATACTAACCAGCAGGAAGAAGATAGCACTCAAGAAGGATCTAAGCATGG
AAGGCTAAGAAAGAAGATAAGGGATTGAAGCAATTGAAGCAATTAAGGCCATTGAGGCCATTGAG
ACCATTGAGACCAATGAGACTAGTGAAGCTGTTGAGGCCATTGAA
Right flanking sequence: Indices 590186 -- 590685
AACGAGGCAACGAGGCAATGAGGCAAATGAGGCAAATGAGGCGATTATGGCCATCGAGGCCATTG
AAACCAGGTAAGTGTATGACAGATTGAAGAAGTTCAAAGGGATTCCGAGAAAAAGGGATAGCAAT
TGAGAGGAGACCAAACAAATGAAGGCAATTGTGACACGGTAATTGCTAATCCCTTGCAACCCAGC
CAAATACGCCGATGCCAACCCTGATTACCGTGGAATGAAACCACACCACATACAAACTACGTTGA
AACCACCAGGGCCCTAACCATATCTAGACCTCCTATATTAATTCACTATCTAATCGAGCGACGGG
CCGATCGCCATGATCGCAAAGTTGTTTTTGTTGCCGTCATCGGTGTTGTCCATGTAGAACTGGAT
CTTCTCCGCCACCTTGGGGTCGGAAATGAGGTGGTTGTTCTCCGCAGTGCACTCTCCAAGGTCGA
CAGGGCCCGCACGACGCCCGTCCAACTCGTACAAATGGCCGTCCC
Found at i:590183 original size:9 final size:8
Alignment explanation
Indices: 590171--590227 Score: 69
Period size: 9 Copynumber: 6.8 Consensus size: 8
590161 TTGAATCCAT
590171 TGAGGCTAA
1 TGAGGC-AA
590180 TGAGGCAA
1 TGAGGCAA
*
590188 CGAGGCAA
1 TGAGGCAA
*
590196 CGAGGCAA
1 TGAGGCAA
590204 TGAGGCAAA
1 TGAGGC-AA
590213 TGAGGCAAA
1 TGAGGC-AA
590222 TGAGGC
1 TGAGGC
590228 GATTATGGCC
Statistics
Matches: 45, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
8 22 0.49
9 23 0.51
ACGTcount: A:0.37, C:0.16, G:0.37, T:0.11
Consensus pattern (8 bp):
TGAGGCAA
Left flanking sequence: Indices 589671 -- 590170
CCGCAACGTGCCGCTCGCGGGGCTTACGGCGACCCGGATGTCCCACAAGTTCCGTGTCCGGTCGC
TCGCAGCGATGACGGCCGCTTACCGCAAGTTGGGTGCGGCTTTCATTGAGCACGAGCTTGGGCTC
GAGGGAGGCGAGTTGGAAAAGTTTTTGCGGAAGGAAAAGCTCGAGGGGTACGTGCAAGCGGGCGA
GCTCGACTGTGTGGCGTGTCGCCAGCCGCTCCTGAGCCTAGTGGCCAGCCCGCTGTTTGCGAAGG
TGGACATCAAGGGCCAGCGATAATACTAACCAGCAGGAAGAAGATAGCACTCAAGAAGGATCTAA
GCATGGAAGGCTAAGAAAGAAGATAAGGGATTGAAGCAATTGAAGCAATTAAGGCCATTGAGGCC
ATTGAGACCATTGAGACCAATGAGACTAGTGAAGCTGTTGAGGCCATTGAAGCCATTGAAGCCAT
TGAGGCTAATGAGGCTAATGGGGCCATTGACGCGATTGAATCCAT
Right flanking sequence: Indices 590228 -- 590727
GATTATGGCCATCGAGGCCATTGAAACCAGGTAAGTGTATGACAGATTGAAGAAGTTCAAAGGGA
TTCCGAGAAAAAGGGATAGCAATTGAGAGGAGACCAAACAAATGAAGGCAATTGTGACACGGTAA
TTGCTAATCCCTTGCAACCCAGCCAAATACGCCGATGCCAACCCTGATTACCGTGGAATGAAACC
ACACCACATACAAACTACGTTGAAACCACCAGGGCCCTAACCATATCTAGACCTCCTATATTAAT
TCACTATCTAATCGAGCGACGGGCCGATCGCCATGATCGCAAAGTTGTTTTTGTTGCCGTCATCG
GTGTTGTCCATGTAGAACTGGATCTTCTCCGCCACCTTGGGGTCGGAAATGAGGTGGTTGTTCTC
CGCAGTGCACTCTCCAAGGTCGACAGGGCCCGCACGACGCCCGTCCAACTCGTACAAATGGCCGT
CCCCACCCTTGATATAGGTAATAAAGTGGAGCTCCACGCTGGCCT
Found at i:590194 original size:8 final size:8
Alignment explanation
Indices: 590181--590211 Score: 53
Period size: 8 Copynumber: 3.9 Consensus size: 8
590171 TGAGGCTAAT
590181 GAGGCAAC
1 GAGGCAAC
590189 GAGGCAAC
1 GAGGCAAC
*
590197 GAGGCAAT
1 GAGGCAAC
590205 GAGGCAA
1 GAGGCAA
590212 ATGAGGCAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
8 22 1.00
ACGTcount: A:0.39, C:0.19, G:0.39, T:0.03
Consensus pattern (8 bp):
GAGGCAAC
Left flanking sequence: Indices 589681 -- 590180
CCGCTCGCGGGGCTTACGGCGACCCGGATGTCCCACAAGTTCCGTGTCCGGTCGCTCGCAGCGAT
GACGGCCGCTTACCGCAAGTTGGGTGCGGCTTTCATTGAGCACGAGCTTGGGCTCGAGGGAGGCG
AGTTGGAAAAGTTTTTGCGGAAGGAAAAGCTCGAGGGGTACGTGCAAGCGGGCGAGCTCGACTGT
GTGGCGTGTCGCCAGCCGCTCCTGAGCCTAGTGGCCAGCCCGCTGTTTGCGAAGGTGGACATCAA
GGGCCAGCGATAATACTAACCAGCAGGAAGAAGATAGCACTCAAGAAGGATCTAAGCATGGAAGG
CTAAGAAAGAAGATAAGGGATTGAAGCAATTGAAGCAATTAAGGCCATTGAGGCCATTGAGACCA
TTGAGACCAATGAGACTAGTGAAGCTGTTGAGGCCATTGAAGCCATTGAAGCCATTGAGGCTAAT
GAGGCTAATGGGGCCATTGACGCGATTGAATCCATTGAGGCTAAT
Right flanking sequence: Indices 590212 -- 590711
ATGAGGCAAATGAGGCGATTATGGCCATCGAGGCCATTGAAACCAGGTAAGTGTATGACAGATTG
AAGAAGTTCAAAGGGATTCCGAGAAAAAGGGATAGCAATTGAGAGGAGACCAAACAAATGAAGGC
AATTGTGACACGGTAATTGCTAATCCCTTGCAACCCAGCCAAATACGCCGATGCCAACCCTGATT
ACCGTGGAATGAAACCACACCACATACAAACTACGTTGAAACCACCAGGGCCCTAACCATATCTA
GACCTCCTATATTAATTCACTATCTAATCGAGCGACGGGCCGATCGCCATGATCGCAAAGTTGTT
TTTGTTGCCGTCATCGGTGTTGTCCATGTAGAACTGGATCTTCTCCGCCACCTTGGGGTCGGAAA
TGAGGTGGTTGTTCTCCGCAGTGCACTCTCCAAGGTCGACAGGGCCCGCACGACGCCCGTCCAAC
TCGTACAAATGGCCGTCCCCACCCTTGATATAGGTAATAAAGTGG
Found at i:593321 original size:13 final size:13
Alignment explanation
Indices: 593303--593329 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
593293 CTGAATGATA
593303 TTAATTGTAACTG
1 TTAATTGTAACTG
593316 TTAATTGTAACTG
1 TTAATTGTAACTG
593329 T
1 T
593330 GTAACTTTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.07, G:0.15, T:0.48
Consensus pattern (13 bp):
TTAATTGTAACTG
Left flanking sequence: Indices 592803 -- 593302
CTCTACCCGCCGCAGGAGTGGTTGGCGCAGAGAACCCGGCTTTCTGCCGGCCCCATCCCCGGGAA
CAACTTCCGCCCGTACTTGGACAACCTGCCGGTGCGTCCCTACGCGGCGGTGCCCACCAACGACC
AGCTCACGTTGTTCATCAACGCCACCATGTACCGTCCGTTCGGCACCAATGTCGGCACCAAGCAG
TGGTACCAGGCGTTTGAGCACGTGATGGCGGGAGCTGGCGGTAAGCCCCACTGGGCCAAGAACTT
CATCGGGTTGGACGGGCCCCACAACTCGGCGGAGAACCAGCAGGGCCAGCTCAGCTACGGGGGCA
AGCCCTTCTACACGATGAACGGGTTTAAGCCGGTGATGGGGGACTGGTTTGGCGAGAACTTGGTC
CGCTTCAATGCGGTGCGACGCCAGACCGATCCCGAAGGCGTGTTTATGTCGGGGAAGCCCTGGGC
TGTCCGGAATGGGATCATTTAGAGTGGGGTAGTAGCTGAATGATA
Right flanking sequence: Indices 593330 -- 593829
GTAACTTTTAGCGGTATTAACTGTTAACGGTGGTAACTGCTAACGGTATCAACTGCTAACTGTGT
AACTATGTTGACTGTACAGTGGGACTGTGTTAATTGTGTGGAACTAGCCATCTCTGTGGTCGTTT
CAGTGTCTATTTTAGTCAGTCTCGTTTCAACCAATTTCACCTACGTGATCCCTCGTTTCTCTTTG
TCCCTCCCTTTGTTCCTGGATCGTCGTACCGTCGTATAGATCACCGCGCCCATCGACGCGTTTCC
CGCCCGGGTTGCCGCGCAATGACCCCGGAAACACCGCCAGCAACCCATTCGCCACCCAAACAACG
CCCCCCCACGCTCCACTTCCCGTTTCCCCGGCCTTCCCTGGCCCATCCGCCCTCGTACACGTCGT
AACCACGCGCACACGTGATCTGATCGTTTAAAAATTGAGTAGCGGGCTCTTTTTCACCTCTAGAC
AACATGGGCAAGGTTGGTCAATTACTAGCACACCCAACAGAGCTT
Found at i:593360 original size:16 final size:16
Alignment explanation
Indices: 593341--593389 Score: 62
Period size: 16 Copynumber: 3.1 Consensus size: 16
593331 TAACTTTTAG
*
593341 CGGTATTAACTGTTAA
1 CGGTATTAACTGCTAA
**
593357 CGGTGGTAACTGCTAA
1 CGGTATTAACTGCTAA
*
593373 CGGTATCAACTGCTAA
1 CGGTATTAACTGCTAA
593389 C
1 C
593390 TGTGTAACTA
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
16 27 1.00
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.29
Consensus pattern (16 bp):
CGGTATTAACTGCTAA
Left flanking sequence: Indices 592841 -- 593340
GCTTTCTGCCGGCCCCATCCCCGGGAACAACTTCCGCCCGTACTTGGACAACCTGCCGGTGCGTC
CCTACGCGGCGGTGCCCACCAACGACCAGCTCACGTTGTTCATCAACGCCACCATGTACCGTCCG
TTCGGCACCAATGTCGGCACCAAGCAGTGGTACCAGGCGTTTGAGCACGTGATGGCGGGAGCTGG
CGGTAAGCCCCACTGGGCCAAGAACTTCATCGGGTTGGACGGGCCCCACAACTCGGCGGAGAACC
AGCAGGGCCAGCTCAGCTACGGGGGCAAGCCCTTCTACACGATGAACGGGTTTAAGCCGGTGATG
GGGGACTGGTTTGGCGAGAACTTGGTCCGCTTCAATGCGGTGCGACGCCAGACCGATCCCGAAGG
CGTGTTTATGTCGGGGAAGCCCTGGGCTGTCCGGAATGGGATCATTTAGAGTGGGGTAGTAGCTG
AATGATATTAATTGTAACTGTTAATTGTAACTGTGTAACTTTTAG
Right flanking sequence: Indices 593390 -- 593889
TGTGTAACTATGTTGACTGTACAGTGGGACTGTGTTAATTGTGTGGAACTAGCCATCTCTGTGGT
CGTTTCAGTGTCTATTTTAGTCAGTCTCGTTTCAACCAATTTCACCTACGTGATCCCTCGTTTCT
CTTTGTCCCTCCCTTTGTTCCTGGATCGTCGTACCGTCGTATAGATCACCGCGCCCATCGACGCG
TTTCCCGCCCGGGTTGCCGCGCAATGACCCCGGAAACACCGCCAGCAACCCATTCGCCACCCAAA
CAACGCCCCCCCACGCTCCACTTCCCGTTTCCCCGGCCTTCCCTGGCCCATCCGCCCTCGTACAC
GTCGTAACCACGCGCACACGTGATCTGATCGTTTAAAAATTGAGTAGCGGGCTCTTTTTCACCTC
TAGACAACATGGGCAAGGTTGGTCAATTACTAGCACACCCAACAGAGCTTGTGGCCGTGGTGCAG
CTCTTGTGGTTCCGGTTGCCCATGCACCCGCAGAACCTCAAGGAC
Found at i:599083 original size:12 final size:12
Alignment explanation
Indices: 599066--599127 Score: 81
Period size: 12 Copynumber: 5.2 Consensus size: 12
599056 TGTGGGGGAG
*
599066 AGGTGGGAAGGC
1 AGGTGGGAAGGT
599078 AGGTGGGAAGGT
1 AGGTGGGAAGGT
599090 AGGTGAGGAA-GT
1 AGGTG-GGAAGGT
*
599102 AGGTGGGGAGGT
1 AGGTGGGAAGGT
*
599114 AGGTAGGAAGGT
1 AGGTGGGAAGGT
599126 AG
1 AG
599128 ATGAATGAGT
Statistics
Matches: 44, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
11 3 0.07
12 37 0.84
13 4 0.09
ACGTcount: A:0.27, C:0.02, G:0.56, T:0.15
Consensus pattern (12 bp):
AGGTGGGAAGGT
Left flanking sequence: Indices 598566 -- 599065
GGGGTGGCGAGCTGGGGGGTGGAGCCCCAGGGTGTAGCGGTAGCACAGGGGGCTCGTGTAACCTT
GCTAAAGGTGGGGAGCCACCCGCATAATTAAGGTTTATTTTCGGTTAGGGGGAGACGGCTACAAG
GCTCGCGGGGATCGTCGCCTAGGCATCGATCGATGGGGAGGGGTGGGCGGTGTCCGCACGTGTGG
CTGGCCTGCTGTTTCGGCGGGTCCCGTGTCTGCGTGCATGCGGCTGGCCGCGGACACCGTGCTTC
TTCACATGGGAACAAAAGTGCTGCCAAAAGAAAGACCCTACTGCACGTCAAAGTGGGGAGCTGTT
GGTGCGAAGCCTAAATGGGACCAATCACGTGGAGGAGGTAGGGGCTTGGGTGAAACGCCCATTGT
CGGCGAGGGAGCGATCTTGTGTTGTGGGGGTGGGGTAGGTTGACGCTGACGATCTGGATGGATCT
GGAGATCGTGTATTGTGATCATGTAAAAAAGGAAGTGTGGGGGAG
Right flanking sequence: Indices 599128 -- 599627
ATGAATGAGTTGGTATGTGGGAGGTATGTGGGAAGGTAGGTGTGTAAGTGGGTGTGTAAGTGAGT
GTGTGAGTTTGTATGTGGGGAGACAGGTGGGAAGGTAGGTAAGTGAGTTGTTGGGTAAGTGAGTC
TAATAGAAGTGGGTGTTCAGGATGGGTGGGTATGTGATCAGGTTGGGTGGGTATGTGGTCAGGTT
GGCGGGTGAGTGAGCAGGTTGGGTTGATCATTGAGTCGGTCGAGATAGCTGTATAACTAGGTTGG
TAGAGGCTGGTCGAGCCACTCTTTCGCTGTAGCCTTGCAGTCTCTAACACCGCTCAAACACCCGG
TACAAACCCGGAAGATCGGCCACCTCGATGATGTCCCCACTAAGCAGCTTCGGCGCCAAAAGCCG
CAGCCGGAGCGCAGGAAACAACACGTTCTCCATCAACGCGTTGAGCTCGGGGTCCACCTCGTGGC
TCGGCGCAGGCAAGTACATGAGCGCCACCTGGCGCATGATCTGCC
Found at i:599181 original size:12 final size:12
Alignment explanation
Indices: 599166--599196 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
599156 TGGGAAGGTA
599166 GGTGTGTAAGTG
1 GGTGTGTAAGTG
599178 GGTGTGTAAGTG
1 GGTGTGTAAGTG
*
599190 AGTGTGT
1 GGTGTGT
599197 GAGTTTGTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.16, C:0.00, G:0.48, T:0.35
Consensus pattern (12 bp):
GGTGTGTAAGTG
Left flanking sequence: Indices 598666 -- 599165
TATTTTCGGTTAGGGGGAGACGGCTACAAGGCTCGCGGGGATCGTCGCCTAGGCATCGATCGATG
GGGAGGGGTGGGCGGTGTCCGCACGTGTGGCTGGCCTGCTGTTTCGGCGGGTCCCGTGTCTGCGT
GCATGCGGCTGGCCGCGGACACCGTGCTTCTTCACATGGGAACAAAAGTGCTGCCAAAAGAAAGA
CCCTACTGCACGTCAAAGTGGGGAGCTGTTGGTGCGAAGCCTAAATGGGACCAATCACGTGGAGG
AGGTAGGGGCTTGGGTGAAACGCCCATTGTCGGCGAGGGAGCGATCTTGTGTTGTGGGGGTGGGG
TAGGTTGACGCTGACGATCTGGATGGATCTGGAGATCGTGTATTGTGATCATGTAAAAAAGGAAG
TGTGGGGGAGAGGTGGGAAGGCAGGTGGGAAGGTAGGTGAGGAAGTAGGTGGGGAGGTAGGTAGG
AAGGTAGATGAATGAGTTGGTATGTGGGAGGTATGTGGGAAGGTA
Right flanking sequence: Indices 599197 -- 599696
GAGTTTGTATGTGGGGAGACAGGTGGGAAGGTAGGTAAGTGAGTTGTTGGGTAAGTGAGTCTAAT
AGAAGTGGGTGTTCAGGATGGGTGGGTATGTGATCAGGTTGGGTGGGTATGTGGTCAGGTTGGCG
GGTGAGTGAGCAGGTTGGGTTGATCATTGAGTCGGTCGAGATAGCTGTATAACTAGGTTGGTAGA
GGCTGGTCGAGCCACTCTTTCGCTGTAGCCTTGCAGTCTCTAACACCGCTCAAACACCCGGTACA
AACCCGGAAGATCGGCCACCTCGATGATGTCCCCACTAAGCAGCTTCGGCGCCAAAAGCCGCAGC
CGGAGCGCAGGAAACAACACGTTCTCCATCAACGCGTTGAGCTCGGGGTCCACCTCGTGGCTCGG
CGCAGGCAAGTACATGAGCGCCACCTGGCGCATGATCTGCCGCAAACACGTCTTTTCGTCCGAGT
AGTCGACAAGCCCCAACCGGTAGAAAAACCGGGGGAGCTTGGCGG
Found at i:599251 original size:64 final size:63
Alignment explanation
Indices: 599133--599256 Score: 149
Period size: 64 Copynumber: 2.0 Consensus size: 63
599123 GGTAGATGAA
** * ** *
599133 TGAGTTGGTATGTGGGAGGTATGTGGGAAGGTAGGTGTGTAAGTGGGTGTGTAAGTGAGTGTG
1 TGAGTTGGTATGTGGGAGACAGGTGGGAAGGTAGGTAAGTAAGTGGGTGGGTAAGTGAGTGTG
* * * *
599196 TGAGTTTGTATGTGGGGAGACAGGTGGGAAGGTAGGTAAGTGAGTTGTTGGGTAAGTGAGT
1 TGAGTTGGTATGT-GGGAGACAGGTGGGAAGGTAGGTAAGTAAGTGGGTGGGTAAGTGAGT
599257 CTAATAGAAG
Statistics
Matches: 50, Mismatches: 10, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
63 12 0.24
64 38 0.76
ACGTcount: A:0.21, C:0.01, G:0.48, T:0.31
Consensus pattern (63 bp):
TGAGTTGGTATGTGGGAGACAGGTGGGAAGGTAGGTAAGTAAGTGGGTGGGTAAGTGAGTGTG
Left flanking sequence: Indices 598633 -- 599132
TAAAGGTGGGGAGCCACCCGCATAATTAAGGTTTATTTTCGGTTAGGGGGAGACGGCTACAAGGC
TCGCGGGGATCGTCGCCTAGGCATCGATCGATGGGGAGGGGTGGGCGGTGTCCGCACGTGTGGCT
GGCCTGCTGTTTCGGCGGGTCCCGTGTCTGCGTGCATGCGGCTGGCCGCGGACACCGTGCTTCTT
CACATGGGAACAAAAGTGCTGCCAAAAGAAAGACCCTACTGCACGTCAAAGTGGGGAGCTGTTGG
TGCGAAGCCTAAATGGGACCAATCACGTGGAGGAGGTAGGGGCTTGGGTGAAACGCCCATTGTCG
GCGAGGGAGCGATCTTGTGTTGTGGGGGTGGGGTAGGTTGACGCTGACGATCTGGATGGATCTGG
AGATCGTGTATTGTGATCATGTAAAAAAGGAAGTGTGGGGGAGAGGTGGGAAGGCAGGTGGGAAG
GTAGGTGAGGAAGTAGGTGGGGAGGTAGGTAGGAAGGTAGATGAA
Right flanking sequence: Indices 599257 -- 599756
CTAATAGAAGTGGGTGTTCAGGATGGGTGGGTATGTGATCAGGTTGGGTGGGTATGTGGTCAGGT
TGGCGGGTGAGTGAGCAGGTTGGGTTGATCATTGAGTCGGTCGAGATAGCTGTATAACTAGGTTG
GTAGAGGCTGGTCGAGCCACTCTTTCGCTGTAGCCTTGCAGTCTCTAACACCGCTCAAACACCCG
GTACAAACCCGGAAGATCGGCCACCTCGATGATGTCCCCACTAAGCAGCTTCGGCGCCAAAAGCC
GCAGCCGGAGCGCAGGAAACAACACGTTCTCCATCAACGCGTTGAGCTCGGGGTCCACCTCGTGG
CTCGGCGCAGGCAAGTACATGAGCGCCACCTGGCGCATGATCTGCCGCAAACACGTCTTTTCGTC
CGAGTAGTCGACAAGCCCCAACCGGTAGAAAAACCGGGGGAGCTTGGCGGGCGACGGCGCCACCT
GCTCCAAGAGCATGGGCAACAGCGTGACTGCACCGTTGTCAAGCC
Found at i:599304 original size:21 final size:21
Alignment explanation
Indices: 599274--599346 Score: 87
Period size: 21 Copynumber: 3.5 Consensus size: 21
599264 AAGTGGGTGT
*
599274 TCAGGATGGGTGGGTATGTGA
1 TCAGGTTGGGTGGGTATGTGA
*
599295 TCAGGTTGGGTGGGTATGTGG
1 TCAGGTTGGGTGGGTATGTGA
*
599316 TCAGGTT-GGCGGGTGA-GTGA
1 TCAGGTTGGGTGGGT-ATGTGA
*
599336 GCAGGTTGGGT
1 TCAGGTTGGGT
599347 TGATCATTGA
Statistics
Matches: 44, Mismatches: 6, Indels: 4
0.81 0.11 0.07
Matches are distributed among these distances:
20 15 0.34
21 29 0.66
ACGTcount: A:0.14, C:0.07, G:0.51, T:0.29
Consensus pattern (21 bp):
TCAGGTTGGGTGGGTATGTGA
Left flanking sequence: Indices 598774 -- 599273
TCGGCGGGTCCCGTGTCTGCGTGCATGCGGCTGGCCGCGGACACCGTGCTTCTTCACATGGGAAC
AAAAGTGCTGCCAAAAGAAAGACCCTACTGCACGTCAAAGTGGGGAGCTGTTGGTGCGAAGCCTA
AATGGGACCAATCACGTGGAGGAGGTAGGGGCTTGGGTGAAACGCCCATTGTCGGCGAGGGAGCG
ATCTTGTGTTGTGGGGGTGGGGTAGGTTGACGCTGACGATCTGGATGGATCTGGAGATCGTGTAT
TGTGATCATGTAAAAAAGGAAGTGTGGGGGAGAGGTGGGAAGGCAGGTGGGAAGGTAGGTGAGGA
AGTAGGTGGGGAGGTAGGTAGGAAGGTAGATGAATGAGTTGGTATGTGGGAGGTATGTGGGAAGG
TAGGTGTGTAAGTGGGTGTGTAAGTGAGTGTGTGAGTTTGTATGTGGGGAGACAGGTGGGAAGGT
AGGTAAGTGAGTTGTTGGGTAAGTGAGTCTAATAGAAGTGGGTGT
Right flanking sequence: Indices 599347 -- 599846
TGATCATTGAGTCGGTCGAGATAGCTGTATAACTAGGTTGGTAGAGGCTGGTCGAGCCACTCTTT
CGCTGTAGCCTTGCAGTCTCTAACACCGCTCAAACACCCGGTACAAACCCGGAAGATCGGCCACC
TCGATGATGTCCCCACTAAGCAGCTTCGGCGCCAAAAGCCGCAGCCGGAGCGCAGGAAACAACAC
GTTCTCCATCAACGCGTTGAGCTCGGGGTCCACCTCGTGGCTCGGCGCAGGCAAGTACATGAGCG
CCACCTGGCGCATGATCTGCCGCAAACACGTCTTTTCGTCCGAGTAGTCGACAAGCCCCAACCGG
TAGAAAAACCGGGGGAGCTTGGCGGGCGACGGCGCCACCTGCTCCAAGAGCATGGGCAACAGCGT
GACTGCACCGTTGTCAAGCCCCAAGTTGAAGTACTCGGCAAACATCGGCGCCATTGCCGTGATGT
TGGCAATCACGTCGGCTAGGGGCACGTCCTCGCCAGCCATCGGCT
Found at i:601595 original size:16 final size:17
Alignment explanation
Indices: 601564--601637 Score: 58
Period size: 20 Copynumber: 3.9 Consensus size: 17
601554 TTCACCCTTG
601564 ACACCCTGATACACACAC
1 ACACCCTGATA-ACACAC
*
601582 ACACCCTGATACACATCCGAT
1 ACACCCTGATA-ACA--C-AC
*
601603 ACACCCTGATAACACCC
1 ACACCCTGATAACACAC
601620 TGACTACCCTGATAACAC
1 --AC-ACCCTGATAACAC
601638 CCTGTCTACC
Statistics
Matches: 47, Mismatches: 3, Indels: 10
0.78 0.05 0.17
Matches are distributed among these distances:
18 16 0.34
19 2 0.04
20 17 0.36
21 12 0.26
ACGTcount: A:0.35, C:0.41, G:0.08, T:0.16
Consensus pattern (17 bp):
ACACCCTGATAACACAC
Left flanking sequence: Indices 601064 -- 601563
AGGGCCTCGCCGCGGAACCCGTAGGTGCCGATGGTCTGCAAGTCGTCGAACGTCGCGAGCTTCAG
CGTGGCAAACCGCTGGCACAACAACGGGAGGTCGTCCCGCGCGATCCCGCTGCCGTCGTCGCTGA
TCTTCATCATCTTGAGCCCGCCGTCCTTGACCACGATCTCGATGTGGCGGGCTCCAGCGTCGATA
GCGTTCTCCAACATCTCCTTGAGGGCATTGGCGGGCCGCACAATCACTTCGCCCGCGGCAATGCG
GTTGATCACCTGCTCGCTGAGCGGTTGGATGGCCATGGACGCGTCGCACTGCGATCGAACTAACT
ACAAAGACTACTAACTACTAGGAACAGTCCACTGGTTAACTCGGTATTGCTAGGTGTGCTAGGGA
TCTTGGAACCAGCTTGTTGAACAGCTCAGCTACTGGCTTTACACACACGAGGTTCTATTGGCATT
GGTACATTGTTCGCTCCTTTGATAACCACCCGTGGTTCACCCTTG
Right flanking sequence: Indices 601638 -- 602137
CCTGTCTACCCTGATAACACCCAGATTACCCTGATAACACCCAGATACACCCGATACACACCCGA
TACACACCCGATACACACCCGATACACACCCTAACTAGCCCATCCTTAATCCACACCATCCACAT
GTCCAACCAACGCAATGACATCGTCCACGACTACGACAGCATCCAGGAGAAGCTTTCCAAGGGCG
CCACCGACACCCTCAGTGCCCGCGACCTCGAGAAGCACTTGATCGACGACCTCGAGCAGGCATGG
CTGCGCACCCAGAAGACCAAGGACATGTACTTGTACTCCAAGGACTCGCACGCGGTCAAGGGGGT
GCTGAAGTTTGCCGCCGACAACGCCCAGAACCTCAAGTTTTCCGGCGAGGGGCTCACCATCACCC
CTACCGAGGTGGTGAAGATGCTCAAGCGGTACATGGGGAACCCCGAGGAGATCGCCGAGGACGAG
GAGCCCACAGAGGCGATGTTCAACATGAACAACTGGCTCGCGCTC
Found at i:601617 original size:11 final size:11
Alignment explanation
Indices: 601582--601734 Score: 102
Period size: 11 Copynumber: 14.6 Consensus size: 11
601572 ATACACACAC
601582 ACACCCTGATA
1 ACACCCTGATA
*
601593 CACATCC-GAT-
1 -ACACCCTGATA
601603 ACACCCTGATA
1 ACACCCTGATA
601614 ACACCCTG---
1 ACACCCTGATA
601622 ACTACCCTGATA
1 AC-ACCCTGATA
601634 ACACCCTG-T-
1 ACACCCTGATA
601643 -CTACCCTGATA
1 AC-ACCCTGATA
*
601654 ACACCCAGAT-
1 ACACCCTGATA
*
601664 -TACCCTGATA
1 ACACCCTGATA
*
601674 ACACCCAGAT-
1 ACACCCTGATA
601684 ACACCC-GATA
1 ACACCCTGATA
601694 CACACCC-GATA
1 -ACACCCTGATA
601705 CACACCC-GATA
1 -ACACCCTGATA
601716 CACACCC-GATA
1 -ACACCCTGATA
601727 CACACCCT
1 -ACACCCT
601735 AACTAGCCCA
Statistics
Matches: 119, Mismatches: 7, Indels: 30
0.76 0.04 0.19
Matches are distributed among these distances:
8 3 0.03
9 27 0.23
10 11 0.09
11 70 0.59
12 8 0.07
ACGTcount: A:0.33, C:0.41, G:0.09, T:0.16
Consensus pattern (11 bp):
ACACCCTGATA
Left flanking sequence: Indices 601082 -- 601581
CCGTAGGTGCCGATGGTCTGCAAGTCGTCGAACGTCGCGAGCTTCAGCGTGGCAAACCGCTGGCA
CAACAACGGGAGGTCGTCCCGCGCGATCCCGCTGCCGTCGTCGCTGATCTTCATCATCTTGAGCC
CGCCGTCCTTGACCACGATCTCGATGTGGCGGGCTCCAGCGTCGATAGCGTTCTCCAACATCTCC
TTGAGGGCATTGGCGGGCCGCACAATCACTTCGCCCGCGGCAATGCGGTTGATCACCTGCTCGCT
GAGCGGTTGGATGGCCATGGACGCGTCGCACTGCGATCGAACTAACTACAAAGACTACTAACTAC
TAGGAACAGTCCACTGGTTAACTCGGTATTGCTAGGTGTGCTAGGGATCTTGGAACCAGCTTGTT
GAACAGCTCAGCTACTGGCTTTACACACACGAGGTTCTATTGGCATTGGTACATTGTTCGCTCCT
TTGATAACCACCCGTGGTTCACCCTTGACACCCTGATACACACAC
Right flanking sequence: Indices 601735 -- 602234
AACTAGCCCATCCTTAATCCACACCATCCACATGTCCAACCAACGCAATGACATCGTCCACGACT
ACGACAGCATCCAGGAGAAGCTTTCCAAGGGCGCCACCGACACCCTCAGTGCCCGCGACCTCGAG
AAGCACTTGATCGACGACCTCGAGCAGGCATGGCTGCGCACCCAGAAGACCAAGGACATGTACTT
GTACTCCAAGGACTCGCACGCGGTCAAGGGGGTGCTGAAGTTTGCCGCCGACAACGCCCAGAACC
TCAAGTTTTCCGGCGAGGGGCTCACCATCACCCCTACCGAGGTGGTGAAGATGCTCAAGCGGTAC
ATGGGGAACCCCGAGGAGATCGCCGAGGACGAGGAGCCCACAGAGGCGATGTTCAACATGAACAA
CTGGCTCGCGCTCGGGACGCTTTTCTACCAGCACTCGCCTCGTCCCGTCGGGATCGACTTTTTGA
ACGGTCCCCTCGAGACCGAGCGAAGGCGTGTGGGGCCCCGCACAC
Found at i:601630 original size:20 final size:20
Alignment explanation
Indices: 601605--601679 Score: 123
Period size: 20 Copynumber: 3.8 Consensus size: 20
601595 CATCCGATAC
601605 ACCCTGATAACACCCTGACT
1 ACCCTGATAACACCCTGACT
*
601625 ACCCTGATAACACCCTGTCT
1 ACCCTGATAACACCCTGACT
* *
601645 ACCCTGATAACACCCAGATT
1 ACCCTGATAACACCCTGACT
601665 ACCCTGATAACACCC
1 ACCCTGATAACACCC
601680 AGATACACCC
Statistics
Matches: 51, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 51 1.00
ACGTcount: A:0.31, C:0.40, G:0.09, T:0.20
Consensus pattern (20 bp):
ACCCTGATAACACCCTGACT
Left flanking sequence: Indices 601105 -- 601604
GTCGTCGAACGTCGCGAGCTTCAGCGTGGCAAACCGCTGGCACAACAACGGGAGGTCGTCCCGCG
CGATCCCGCTGCCGTCGTCGCTGATCTTCATCATCTTGAGCCCGCCGTCCTTGACCACGATCTCG
ATGTGGCGGGCTCCAGCGTCGATAGCGTTCTCCAACATCTCCTTGAGGGCATTGGCGGGCCGCAC
AATCACTTCGCCCGCGGCAATGCGGTTGATCACCTGCTCGCTGAGCGGTTGGATGGCCATGGACG
CGTCGCACTGCGATCGAACTAACTACAAAGACTACTAACTACTAGGAACAGTCCACTGGTTAACT
CGGTATTGCTAGGTGTGCTAGGGATCTTGGAACCAGCTTGTTGAACAGCTCAGCTACTGGCTTTA
CACACACGAGGTTCTATTGGCATTGGTACATTGTTCGCTCCTTTGATAACCACCCGTGGTTCACC
CTTGACACCCTGATACACACACACACCCTGATACACATCCGATAC
Right flanking sequence: Indices 601680 -- 602179
AGATACACCCGATACACACCCGATACACACCCGATACACACCCGATACACACCCTAACTAGCCCA
TCCTTAATCCACACCATCCACATGTCCAACCAACGCAATGACATCGTCCACGACTACGACAGCAT
CCAGGAGAAGCTTTCCAAGGGCGCCACCGACACCCTCAGTGCCCGCGACCTCGAGAAGCACTTGA
TCGACGACCTCGAGCAGGCATGGCTGCGCACCCAGAAGACCAAGGACATGTACTTGTACTCCAAG
GACTCGCACGCGGTCAAGGGGGTGCTGAAGTTTGCCGCCGACAACGCCCAGAACCTCAAGTTTTC
CGGCGAGGGGCTCACCATCACCCCTACCGAGGTGGTGAAGATGCTCAAGCGGTACATGGGGAACC
CCGAGGAGATCGCCGAGGACGAGGAGCCCACAGAGGCGATGTTCAACATGAACAACTGGCTCGCG
CTCGGGACGCTTTTCTACCAGCACTCGCCTCGTCCCGTCGGGATC
Found at i:601693 original size:20 final size:19
Alignment explanation
Indices: 601582--601729 Score: 106
Period size: 20 Copynumber: 7.2 Consensus size: 19
601572 ATACACACAC
*
601582 ACACCCTGATACACATCCGAT
1 ACACCC-GATA-ACACCCGAT
601603 ACACCCTGATAACACCCTGACT
1 ACACCC-GATAACACCC-GA-T
*
601625 AC-CCTGATAACACCCTG-T
1 ACACCCGATAACACCC-GAT
601643 -CTACCCTGATAACACCCAGATT
1 AC-ACCC-GATAACACCC-GA-T
*
601665 AC-CCTGATAACACCCAGAT
1 ACACCCGATAACACCC-GAT
601684 ACACCCGATACACACCCGAT
1 ACACCCGATA-ACACCCGAT
601704 ACACACCCGATACACACCCGAT
1 --ACACCCGATA-ACACCCGAT
601726 ACAC
1 ACAC
601730 ACCCTAACTA
Statistics
Matches: 109, Mismatches: 6, Indels: 25
0.78 0.04 0.18
Matches are distributed among these distances:
17 1 0.01
18 1 0.01
19 5 0.05
20 54 0.50
21 23 0.21
22 24 0.22
23 1 0.01
ACGTcount: A:0.34, C:0.41, G:0.09, T:0.16
Consensus pattern (19 bp):
ACACCCGATAACACCCGAT
Left flanking sequence: Indices 601082 -- 601581
CCGTAGGTGCCGATGGTCTGCAAGTCGTCGAACGTCGCGAGCTTCAGCGTGGCAAACCGCTGGCA
CAACAACGGGAGGTCGTCCCGCGCGATCCCGCTGCCGTCGTCGCTGATCTTCATCATCTTGAGCC
CGCCGTCCTTGACCACGATCTCGATGTGGCGGGCTCCAGCGTCGATAGCGTTCTCCAACATCTCC
TTGAGGGCATTGGCGGGCCGCACAATCACTTCGCCCGCGGCAATGCGGTTGATCACCTGCTCGCT
GAGCGGTTGGATGGCCATGGACGCGTCGCACTGCGATCGAACTAACTACAAAGACTACTAACTAC
TAGGAACAGTCCACTGGTTAACTCGGTATTGCTAGGTGTGCTAGGGATCTTGGAACCAGCTTGTT
GAACAGCTCAGCTACTGGCTTTACACACACGAGGTTCTATTGGCATTGGTACATTGTTCGCTCCT
TTGATAACCACCCGTGGTTCACCCTTGACACCCTGATACACACAC
Right flanking sequence: Indices 601730 -- 602229
ACCCTAACTAGCCCATCCTTAATCCACACCATCCACATGTCCAACCAACGCAATGACATCGTCCA
CGACTACGACAGCATCCAGGAGAAGCTTTCCAAGGGCGCCACCGACACCCTCAGTGCCCGCGACC
TCGAGAAGCACTTGATCGACGACCTCGAGCAGGCATGGCTGCGCACCCAGAAGACCAAGGACATG
TACTTGTACTCCAAGGACTCGCACGCGGTCAAGGGGGTGCTGAAGTTTGCCGCCGACAACGCCCA
GAACCTCAAGTTTTCCGGCGAGGGGCTCACCATCACCCCTACCGAGGTGGTGAAGATGCTCAAGC
GGTACATGGGGAACCCCGAGGAGATCGCCGAGGACGAGGAGCCCACAGAGGCGATGTTCAACATG
AACAACTGGCTCGCGCTCGGGACGCTTTTCTACCAGCACTCGCCTCGTCCCGTCGGGATCGACTT
TTTGAACGGTCCCCTCGAGACCGAGCGAAGGCGTGTGGGGCCCCG
Done.