Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: scaffold44
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 500465
ACGTcount: A:0.24, C:0.26, G:0.26, T:0.24
Found at i:11062 original size:12 final size:12
Alignment explanation
Indices: 11045--11082 Score: 58
Period size: 12 Copynumber: 3.2 Consensus size: 12
11035 CTTCGGCGGC
11045 CCGGTGGACGGG
1 CCGGTGGACGGG
*
11057 CCGGTGGATGGG
1 CCGGTGGACGGG
*
11069 CCGGTCGACGGG
1 CCGGTGGACGGG
11081 CC
1 CC
11083 CTCGTAGGTT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.08, C:0.29, G:0.53, T:0.11
Consensus pattern (12 bp):
CCGGTGGACGGG
Left flanking sequence: Indices 10545 -- 11044
TGAGCCGTGTCCGCTGACACAACGGACACTTGTCGAAAACCATGATCCGCTGGACGTGGTCCGGG
AGCTGGGTGTACTCCTCGAGACAGTCGATGAGGTCCTCGGTGGCAAGCTCGTCGCTGTCGACCTT
GTTGAGCTTGACGAGGAACGAGTTGGCCAACAGCTCGGCGTCGGTGCACCCGAGCGTGTCGAGCA
ACAGCACAAGCTCGAAGTAGTCGTATGACTGCAGGTCCGACACCTTGAACTGGTTCAACAAAATG
TGCCAAAAGTGTCGGCGGAGGTCGGCGTACGTTTCGAACCGGGCCCGGATTTTGAGGGTGGACTC
GTGTTTTTCCTCGTACTTGGCCTTCTCGAGCTTGAGCTTCAAGTTGATGGTGACAAAGTTCGAGG
TGTCGTGGTAGGCCGAGGTGATCTTGGCCTTGCGGCGGATCTTCAGCTTGCGCACCTCGTGCACG
AGGTTGTCGTTGTCGAGGAAGGTGATGGTCTGCTGCTTCGGCGGC
Right flanking sequence: Indices 11083 -- 11582
CTCGTAGGTTTTGGGTTCCTCGTCGTCCACCGAGATGGGCTCGCTGTTCTCGCTGACCGGGCCCG
AGGTGTCGTCGAGGGCGTTGATTGCAGGAAACCCCTCGGGCTCGATCTTGGACTCCTCCAGTTTG
CTGGCCTCGATGGCTGCGTTGGGCCGGGCGGTGGCGCGGTCGGTGACGTCGCTCAACGGAATCGA
CACCGCGCCGATCTTGTCGTGGTTGCTGATCAAGTCCTTGTCAAACACCTCGAACCGCACGTCGT
ACCCTACCTCGAACGGGAGCACCTCAAACACAAGGCGCTCGTTGAAGATCGGGTTGAGGGTGTGG
CGCTTCCACGACGTGCGGTAGGTCTTGCGGCCAAACGTCACCACCACAAACGGGTCCACGTCGTA
CGAGGTGCGGGTGACGTTGCGCATCCGCGGCAAGTCCAGGCACAGCACCACCTCCAAGTACAACA
CCCCGTACACCTTGCGGTTCTGGAGCTCGTACTTGGCGGGTTCCT
Found at i:16874 original size:12 final size:12
Alignment explanation
Indices: 16857--16884 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
16847 CCGCACCACC
16857 ACCGCCCCCAAA
1 ACCGCCCCCAAA
16869 ACCGCCCCCAAA
1 ACCGCCCCCAAA
16881 ACCG
1 ACCG
16885 GGCTTCCGCC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.32, C:0.57, G:0.11, T:0.00
Consensus pattern (12 bp):
ACCGCCCCCAAA
Left flanking sequence: Indices 16357 -- 16856
GTGTAGTGCCGCAACTCCGCCAGCGAGTAGGTTTCCGAGAATCGTAAGATACCGACGGACCAATT
GGGTCTCGATCCTTGGTCTCTCGATTTGTTCTCTCGATATTTATGTCTCTTTTTTTGAAATTTCT
CTATTTGCTGTCTCGATCCCTTTTTCGGAGTCTTTGACTCGTGTAATCTTCGTTCTTATTGTGCA
ACCGTTGTCGTTATCGGTCCATGTGCATCAGCGCAACCGGCAAAAATAGTTTAGACTCCAGCCAC
AGATCCACAAGATCTACTCAACCACGTATCGCCAGTGCATCCCCAATGCTCCCCAGCCCCTAACC
CGCTATATAGATAAACTACTGTCCCTCTACTGCCCCACCGCTGCCCCATCGTCCACCACACACCT
CATACTGCGTCAACGTGGGAAGGTTGCGAAAGGTGTGGCCAGCCCCGCCAAACCACCGCCACCGC
CCAACCCACCCGTAATCAACCCCCGTAAACCCGCTCCGCACCACC
Right flanking sequence: Indices 16885 -- 17384
GGCTTCCGCCCGCTTCGACCGGTTTGCCACTCCGTCACGTGAGCACCCGGCGCATAAAATCGCCA
CCCGATTTATTCAACAACACATCCACTACTACTATGGCTGGAGACCACGACGAAAAGCGCCCCCA
CATCGACGCTTCCGGCGAGCAGAAGACCGAGGATAAGACGGCCACCGCCATCTTGCGTCGCAAGA
AAAAGGACAATGCGTTGATTGTCGACGACGCCACCAACGACGACAACTCGATCATCACCATGTCT
CTGAACACGATGGAGCTCTTGCAATTGTTCCGCGGAGACACGGTGTTGGTCAAGGGCAAGAAGCG
CAAGGACACGGTGTTGATTGCCCTTGCCGACGACGACATGGAGGACGGGGTGGCCCGCATCAACC
GTTGTGTCCGTGGCAACTTGCGGGTGCGGTTGGGCGACATCATCACCATCCACCCGTGTCCCGAC
ATCAAATACGCCAACAGAATCCTGGTGTTGCCGCTTGCCGACACC
Found at i:27950 original size:21 final size:21
Alignment explanation
Indices: 27906--27971 Score: 87
Period size: 21 Copynumber: 3.1 Consensus size: 21
27896 CTCGTACAGT
*
27906 TCCGTAGCACATGTTGCTCAAG
1 TCCGTAGCACATGTTG-ACAAG
* *
27928 TCCGTAGCGCGTGTTGACAAG
1 TCCGTAGCACATGTTGACAAG
*
27949 TCCGTAGCACACGTTGACAAG
1 TCCGTAGCACATGTTGACAAG
27970 TC
1 TC
27972 GTAAAACCGT
Statistics
Matches: 38, Mismatches: 6, Indels: 1
0.84 0.13 0.02
Matches are distributed among these distances:
21 24 0.63
22 14 0.37
ACGTcount: A:0.23, C:0.27, G:0.26, T:0.24
Consensus pattern (21 bp):
TCCGTAGCACATGTTGACAAG
Left flanking sequence: Indices 27406 -- 27905
GCATGCCGGCAGCCGCGTCTGCGTCGCGGGACCTTCCGCTTTTTCCCGAGGCGAGCGACTTGACG
GCCCGGGCCAAGAAAAACTAGGTAGATAATAGAATGGTTGCGGTGCATGAAGGCATGTGGAGGGG
GTGGAAACATTAAAGAAGAGAGGAAGTAGAGTTGACATTGCGTAGAGTAGAGGTACGGAGATAGA
GTTGACATACTGAAGTAGAGTTGGGGTACTGAGGTAGATACGGAGCTCGAGTTGACAACCTGAAG
TAGAGTTGTGGTACTGAAGGAGTGGTTACAGAAGTTGATAAGGACAAAAATTTAACCCGAGAAGT
AAACACCCATGAGTACCACAAACACCGGAAGGTCTCGGAAGTGGGACAGAACGGAATACACAATG
GTGGAACCAGGGGAAAACGTCTGACGTTGCTGAGTAATTGAAAGTGAGACATTTCAGGAAAAGAT
ACGTGGGACACCTGTAAACAAACCGTCGCACGCAGCTCGTACAGT
Right flanking sequence: Indices 27972 -- 28471
GTAAAACCGTAACCTCGTACAAAACAAGGGCGCTGTCGCCGTGGTGACTCATCCCGTACACGGCC
CAGTGGGGCTACGGACGCAGACACCCTGCCACCACCGGTGCCTCGCCCGAAATTACGTGACCGTA
ACCGGCCCGAAAGGCGCAGTGACCACGCACCGCCACCACCGCTCCCGTCGCGCCACCCCGCTCCG
GCGCCCCGGTGCTTCCCCGTAGCCTCCCCCGCGTCGGCTCCAGCTTCATGGCTGGCTCGTCGACG
TCCCGGAACGGGCCATGACTGCCGTGCGCCGATATGCACGCGGGCACTCGGCCCAAATGCCTCAA
GACCACCACCACCACCCCCGCCACCGGCGCCAGCCACGCGGGCCCAACCCCACCTCTACACCCGT
CTCTACACCCCGCGCCTCCACCACCTGCCTCGGCCCCTCGCAGCGACGTGTCGCGACCGTTGGCC
CCACCTTATCGCCCCTATTCCCCAGTGATAGCGCGACCTGCACCT
Found at i:109440 original size:18 final size:18
Alignment explanation
Indices: 109419--109478 Score: 86
Period size: 18 Copynumber: 3.3 Consensus size: 18
109409 GGGCTCTCTG
109419 GGCTCTGCT-GGTTCTGGT
1 GGCTCT-CTGGGTTCTGGT
*
109437 GGCTCTCTGGGCTCTGGT
1 GGCTCTCTGGGTTCTGGT
*
109455 GGCTCTCTGGGTGCTGGT
1 GGCTCTCTGGGTTCTGGT
109473 GGCTCT
1 GGCTCT
109479 GCCGGTTCCG
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
17 2 0.05
18 36 0.95
ACGTcount: A:0.00, C:0.25, G:0.40, T:0.35
Consensus pattern (18 bp):
GGCTCTCTGGGTTCTGGT
Left flanking sequence: Indices 108919 -- 109418
TTGAACCCTTTTAAAATCCGCTGTGTTGAAGCCTGCTGTCCCCAGTAAACTGGCTTTTTGTTTTC
TTCTTCCGTCGCCCTTACTTTCAATAGCCTACGCCGTTACGATAGTGTGCCCCTTAACCTTGACC
TAAATTATCCGCGCGGAATGCGCCATGATGTAAGCTCAATTTGCAGCCAGAACCACAGGTCGTCA
ATTTCACAATAGTTCACGACCGGGGCTATGTCTGAATCTTTGTTAGTCGTGTCAGTGGATGAACT
GACAAGGGCCAGCCTTATGCACCATGACATTCAAACAGTAAACAGCCACTTCGCGAATGATATAA
AAGGACGGGGGATGTGCTTGGCAAAAGCCATCAGTAACACACAATGAAGTTTTCTACTGTTTCTT
TCGCTACTTGCCTCGCCATTGCCCTCGCTGCTGAGGACTCTGCCCCCGCCGCTGGCGGTGCTGGT
GCCCCCGCTGCTGGTGGTGACTCCGCCGGCTCCCTGGGCTCTCTG
Right flanking sequence: Indices 109479 -- 109978
GCCGGTTCCGCTGGGTCCTCTGACTCCCTGGGTGCTGGCTCTGGTTCTTCTGGTTCTGGTTCCTC
TGGGGCTGACTCTGGTGCCGCTGCCGCTGCTGCCGAGGGTGCTGCTGACGTCTCGGGTGAGGAGG
CTGGTGCTGCCTCTGGTGCTGCTGCCTCTGGTGCCGCTGGCACTGACGCTGCTGCCGGTACCGCT
GCCGCTGGTGGTGAGACCGACGCCGCTGCTGCTTCTGGCGCTGCTGGTTCTGCTGCTGGTTCTGC
TGCCGGCTCTGCCGCCGCTGACGCCACTGACGCTGCTGCTGGTGCCGACTCTACTGGTGGTCTGT
CCGACCTGTCCGACCTGTCTGGCTTGGGCGGCATGGGTGGCCTGTCCGGTCTGTCCGGTCTGTCT
GGCCTGTCTGGCCTGTCTGGTGACCTGGAGTCCGGTGGCTCTTCTGGCCTGGGTGGTCTCCTCGG
TGGCAGCAGTGCCTCTCCTCTGATCTCTCTGGGTGGTAACGGCAC
Found at i:109448 original size:36 final size:36
Alignment explanation
Indices: 109401--109478 Score: 97
Period size: 36 Copynumber: 2.2 Consensus size: 36
109391 TGACTCCGCC
* * *
109401 GGCTCCCTGGGCTCT-CTGGGCTCTGCT-GGTTCTGGT
1 GGCTCTCTGGGCTCTGGT-GGCTCT-CTGGGTGCTGGT
109437 GGCTCTCTGGGCTCTGGTGGCTCTCTGGGTGCTGGT
1 GGCTCTCTGGGCTCTGGTGGCTCTCTGGGTGCTGGT
109473 GGCTCT
1 GGCTCT
109479 GCCGGTTCCG
Statistics
Matches: 37, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
35 2 0.05
36 34 0.92
37 1 0.03
ACGTcount: A:0.00, C:0.28, G:0.38, T:0.33
Consensus pattern (36 bp):
GGCTCTCTGGGCTCTGGTGGCTCTCTGGGTGCTGGT
Left flanking sequence: Indices 108901 -- 109400
ATGTCCCTGGACTGACATTTGAACCCTTTTAAAATCCGCTGTGTTGAAGCCTGCTGTCCCCAGTA
AACTGGCTTTTTGTTTTCTTCTTCCGTCGCCCTTACTTTCAATAGCCTACGCCGTTACGATAGTG
TGCCCCTTAACCTTGACCTAAATTATCCGCGCGGAATGCGCCATGATGTAAGCTCAATTTGCAGC
CAGAACCACAGGTCGTCAATTTCACAATAGTTCACGACCGGGGCTATGTCTGAATCTTTGTTAGT
CGTGTCAGTGGATGAACTGACAAGGGCCAGCCTTATGCACCATGACATTCAAACAGTAAACAGCC
ACTTCGCGAATGATATAAAAGGACGGGGGATGTGCTTGGCAAAAGCCATCAGTAACACACAATGA
AGTTTTCTACTGTTTCTTTCGCTACTTGCCTCGCCATTGCCCTCGCTGCTGAGGACTCTGCCCCC
GCCGCTGGCGGTGCTGGTGCCCCCGCTGCTGGTGGTGACTCCGCC
Right flanking sequence: Indices 109479 -- 109978
GCCGGTTCCGCTGGGTCCTCTGACTCCCTGGGTGCTGGCTCTGGTTCTTCTGGTTCTGGTTCCTC
TGGGGCTGACTCTGGTGCCGCTGCCGCTGCTGCCGAGGGTGCTGCTGACGTCTCGGGTGAGGAGG
CTGGTGCTGCCTCTGGTGCTGCTGCCTCTGGTGCCGCTGGCACTGACGCTGCTGCCGGTACCGCT
GCCGCTGGTGGTGAGACCGACGCCGCTGCTGCTTCTGGCGCTGCTGGTTCTGCTGCTGGTTCTGC
TGCCGGCTCTGCCGCCGCTGACGCCACTGACGCTGCTGCTGGTGCCGACTCTACTGGTGGTCTGT
CCGACCTGTCCGACCTGTCTGGCTTGGGCGGCATGGGTGGCCTGTCCGGTCTGTCCGGTCTGTCT
GGCCTGTCTGGCCTGTCTGGTGACCTGGAGTCCGGTGGCTCTTCTGGCCTGGGTGGTCTCCTCGG
TGGCAGCAGTGCCTCTCCTCTGATCTCTCTGGGTGGTAACGGCAC
Found at i:109536 original size:15 final size:15
Alignment explanation
Indices: 109513--109546 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
109503 TCCCTGGGTG
*
109513 CTGGCTCTGGTTCTT
1 CTGGCTCTGGTTCCT
*
109528 CTGGTTCTGGTTCCT
1 CTGGCTCTGGTTCCT
109543 CTGG
1 CTGG
109547 GGCTGACTCT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.00, C:0.26, G:0.29, T:0.44
Consensus pattern (15 bp):
CTGGCTCTGGTTCCT
Left flanking sequence: Indices 109013 -- 109512
TACGCCGTTACGATAGTGTGCCCCTTAACCTTGACCTAAATTATCCGCGCGGAATGCGCCATGAT
GTAAGCTCAATTTGCAGCCAGAACCACAGGTCGTCAATTTCACAATAGTTCACGACCGGGGCTAT
GTCTGAATCTTTGTTAGTCGTGTCAGTGGATGAACTGACAAGGGCCAGCCTTATGCACCATGACA
TTCAAACAGTAAACAGCCACTTCGCGAATGATATAAAAGGACGGGGGATGTGCTTGGCAAAAGCC
ATCAGTAACACACAATGAAGTTTTCTACTGTTTCTTTCGCTACTTGCCTCGCCATTGCCCTCGCT
GCTGAGGACTCTGCCCCCGCCGCTGGCGGTGCTGGTGCCCCCGCTGCTGGTGGTGACTCCGCCGG
CTCCCTGGGCTCTCTGGGCTCTGCTGGTTCTGGTGGCTCTCTGGGCTCTGGTGGCTCTCTGGGTG
CTGGTGGCTCTGCCGGTTCCGCTGGGTCCTCTGACTCCCTGGGTG
Right flanking sequence: Indices 109547 -- 110046
GGCTGACTCTGGTGCCGCTGCCGCTGCTGCCGAGGGTGCTGCTGACGTCTCGGGTGAGGAGGCTG
GTGCTGCCTCTGGTGCTGCTGCCTCTGGTGCCGCTGGCACTGACGCTGCTGCCGGTACCGCTGCC
GCTGGTGGTGAGACCGACGCCGCTGCTGCTTCTGGCGCTGCTGGTTCTGCTGCTGGTTCTGCTGC
CGGCTCTGCCGCCGCTGACGCCACTGACGCTGCTGCTGGTGCCGACTCTACTGGTGGTCTGTCCG
ACCTGTCCGACCTGTCTGGCTTGGGCGGCATGGGTGGCCTGTCCGGTCTGTCCGGTCTGTCTGGC
CTGTCTGGCCTGTCTGGTGACCTGGAGTCCGGTGGCTCTTCTGGCCTGGGTGGTCTCCTCGGTGG
CAGCAGTGCCTCTCCTCTGATCTCTCTGGGTGGTAACGGCACTGACTCCAACGCCGCTGGTATGG
TCGGTGTTTCTTCCGGTGGTCTCGCTTTGGTCGCGGCCGTCATGG
Found at i:109633 original size:15 final size:15
Alignment explanation
Indices: 109613--109647 Score: 61
Period size: 15 Copynumber: 2.3 Consensus size: 15
109603 AGGAGGCTGG
109613 TGCTGCCTCTGGTGC
1 TGCTGCCTCTGGTGC
109628 TGCTGCCTCTGGTGC
1 TGCTGCCTCTGGTGC
*
109643 CGCTG
1 TGCTG
109648 GCACTGACGC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.00, C:0.34, G:0.34, T:0.31
Consensus pattern (15 bp):
TGCTGCCTCTGGTGC
Left flanking sequence: Indices 109113 -- 109612
AATTTCACAATAGTTCACGACCGGGGCTATGTCTGAATCTTTGTTAGTCGTGTCAGTGGATGAAC
TGACAAGGGCCAGCCTTATGCACCATGACATTCAAACAGTAAACAGCCACTTCGCGAATGATATA
AAAGGACGGGGGATGTGCTTGGCAAAAGCCATCAGTAACACACAATGAAGTTTTCTACTGTTTCT
TTCGCTACTTGCCTCGCCATTGCCCTCGCTGCTGAGGACTCTGCCCCCGCCGCTGGCGGTGCTGG
TGCCCCCGCTGCTGGTGGTGACTCCGCCGGCTCCCTGGGCTCTCTGGGCTCTGCTGGTTCTGGTG
GCTCTCTGGGCTCTGGTGGCTCTCTGGGTGCTGGTGGCTCTGCCGGTTCCGCTGGGTCCTCTGAC
TCCCTGGGTGCTGGCTCTGGTTCTTCTGGTTCTGGTTCCTCTGGGGCTGACTCTGGTGCCGCTGC
CGCTGCTGCCGAGGGTGCTGCTGACGTCTCGGGTGAGGAGGCTGG
Right flanking sequence: Indices 109648 -- 110147
GCACTGACGCTGCTGCCGGTACCGCTGCCGCTGGTGGTGAGACCGACGCCGCTGCTGCTTCTGGC
GCTGCTGGTTCTGCTGCTGGTTCTGCTGCCGGCTCTGCCGCCGCTGACGCCACTGACGCTGCTGC
TGGTGCCGACTCTACTGGTGGTCTGTCCGACCTGTCCGACCTGTCTGGCTTGGGCGGCATGGGTG
GCCTGTCCGGTCTGTCCGGTCTGTCTGGCCTGTCTGGCCTGTCTGGTGACCTGGAGTCCGGTGGC
TCTTCTGGCCTGGGTGGTCTCCTCGGTGGCAGCAGTGCCTCTCCTCTGATCTCTCTGGGTGGTAA
CGGCACTGACTCCAACGCCGCTGGTATGGTCGGTGTTTCTTCCGGTGGTCTCGCTTTGGTCGCGG
CCGTCATGGGTGCCCTCATCTAAATGCCCCAGTAACTAGTATGTACATTATGAAAGCGCTTATCT
TTACTGGCCCAAGGCTTCTGTCTTCGTAGCATTGTATTTGAACAC
Found at i:109728 original size:12 final size:12
Alignment explanation
Indices: 109713--109741 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
109703 TGCTTCTGGC
109713 GCTGCTGGTTCT
1 GCTGCTGGTTCT
109725 GCTGCTGGTTCT
1 GCTGCTGGTTCT
109737 GCTGC
1 GCTGC
109742 CGGCTCTGCC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.00, C:0.28, G:0.34, T:0.38
Consensus pattern (12 bp):
GCTGCTGGTTCT
Left flanking sequence: Indices 109213 -- 109712
ACAGTAAACAGCCACTTCGCGAATGATATAAAAGGACGGGGGATGTGCTTGGCAAAAGCCATCAG
TAACACACAATGAAGTTTTCTACTGTTTCTTTCGCTACTTGCCTCGCCATTGCCCTCGCTGCTGA
GGACTCTGCCCCCGCCGCTGGCGGTGCTGGTGCCCCCGCTGCTGGTGGTGACTCCGCCGGCTCCC
TGGGCTCTCTGGGCTCTGCTGGTTCTGGTGGCTCTCTGGGCTCTGGTGGCTCTCTGGGTGCTGGT
GGCTCTGCCGGTTCCGCTGGGTCCTCTGACTCCCTGGGTGCTGGCTCTGGTTCTTCTGGTTCTGG
TTCCTCTGGGGCTGACTCTGGTGCCGCTGCCGCTGCTGCCGAGGGTGCTGCTGACGTCTCGGGTG
AGGAGGCTGGTGCTGCCTCTGGTGCTGCTGCCTCTGGTGCCGCTGGCACTGACGCTGCTGCCGGT
ACCGCTGCCGCTGGTGGTGAGACCGACGCCGCTGCTGCTTCTGGC
Right flanking sequence: Indices 109742 -- 110241
CGGCTCTGCCGCCGCTGACGCCACTGACGCTGCTGCTGGTGCCGACTCTACTGGTGGTCTGTCCG
ACCTGTCCGACCTGTCTGGCTTGGGCGGCATGGGTGGCCTGTCCGGTCTGTCCGGTCTGTCTGGC
CTGTCTGGCCTGTCTGGTGACCTGGAGTCCGGTGGCTCTTCTGGCCTGGGTGGTCTCCTCGGTGG
CAGCAGTGCCTCTCCTCTGATCTCTCTGGGTGGTAACGGCACTGACTCCAACGCCGCTGGTATGG
TCGGTGTTTCTTCCGGTGGTCTCGCTTTGGTCGCGGCCGTCATGGGTGCCCTCATCTAAATGCCC
CAGTAACTAGTATGTACATTATGAAAGCGCTTATCTTTACTGGCCCAAGGCTTCTGTCTTCGTAG
CATTGTATTTGAACACGACTCGATGAAATGAACGAAATTGGATTGCGAACTCTCCGTTGGCCGGA
ATCGAGAACAATTCCTGTGAAAACCACCGTGATGCAACGGTGTTC
Found at i:109875 original size:9 final size:9
Alignment explanation
Indices: 109841--109888 Score: 60
Period size: 9 Copynumber: 5.3 Consensus size: 9
109831 GCGGCATGGG
109841 TGGCCTGTC
1 TGGCCTGTC
* *
109850 CGGTCTGTC
1 TGGCCTGTC
* *
109859 CGGTCTGTC
1 TGGCCTGTC
109868 TGGCCTGTC
1 TGGCCTGTC
109877 TGGCCTGTC
1 TGGCCTGTC
109886 TGG
1 TGG
109889 TGACCTGGAG
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
9 35 1.00
ACGTcount: A:0.00, C:0.31, G:0.35, T:0.33
Consensus pattern (9 bp):
TGGCCTGTC
Left flanking sequence: Indices 109341 -- 109840
GAGGACTCTGCCCCCGCCGCTGGCGGTGCTGGTGCCCCCGCTGCTGGTGGTGACTCCGCCGGCTC
CCTGGGCTCTCTGGGCTCTGCTGGTTCTGGTGGCTCTCTGGGCTCTGGTGGCTCTCTGGGTGCTG
GTGGCTCTGCCGGTTCCGCTGGGTCCTCTGACTCCCTGGGTGCTGGCTCTGGTTCTTCTGGTTCT
GGTTCCTCTGGGGCTGACTCTGGTGCCGCTGCCGCTGCTGCCGAGGGTGCTGCTGACGTCTCGGG
TGAGGAGGCTGGTGCTGCCTCTGGTGCTGCTGCCTCTGGTGCCGCTGGCACTGACGCTGCTGCCG
GTACCGCTGCCGCTGGTGGTGAGACCGACGCCGCTGCTGCTTCTGGCGCTGCTGGTTCTGCTGCT
GGTTCTGCTGCCGGCTCTGCCGCCGCTGACGCCACTGACGCTGCTGCTGGTGCCGACTCTACTGG
TGGTCTGTCCGACCTGTCCGACCTGTCTGGCTTGGGCGGCATGGG
Right flanking sequence: Indices 109889 -- 110388
TGACCTGGAGTCCGGTGGCTCTTCTGGCCTGGGTGGTCTCCTCGGTGGCAGCAGTGCCTCTCCTC
TGATCTCTCTGGGTGGTAACGGCACTGACTCCAACGCCGCTGGTATGGTCGGTGTTTCTTCCGGT
GGTCTCGCTTTGGTCGCGGCCGTCATGGGTGCCCTCATCTAAATGCCCCAGTAACTAGTATGTAC
ATTATGAAAGCGCTTATCTTTACTGGCCCAAGGCTTCTGTCTTCGTAGCATTGTATTTGAACACG
ACTCGATGAAATGAACGAAATTGGATTGCGAACTCTCCGTTGGCCGGAATCGAGAACAATTCCTG
TGAAAACCACCGTGATGCAACGGTGTTCAATTTTCACTCTACCGGGTAGTGTTTGGTAGCCCACT
TTCGAACGGCAGGACGCGCGCGCGAAAACTCAAACGTCAATTTCAAGCCATAACATCCAGCATCC
ATGGTGTACACTTCCCCTTCGGTGGTTATTGACAACGGCTCCAAC
Found at i:127976 original size:17 final size:17
Alignment explanation
Indices: 127949--128001 Score: 63
Period size: 17 Copynumber: 3.1 Consensus size: 17
127939 TAACGGGGGT
127949 GAATGAACTGAGTGGAGA
1 GAAT-AACTGAGTGGAGA
127967 GAATAACTGAGTTGG-GA
1 GAATAACTGAG-TGGAGA
* *
127984 GAGTAACTGAGTGAAGA
1 GAATAACTGAGTGGAGA
128001 G
1 G
128002 TGAAGAGATG
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
16 2 0.06
17 22 0.71
18 7 0.23
ACGTcount: A:0.38, C:0.06, G:0.38, T:0.19
Consensus pattern (17 bp):
GAATAACTGAGTGGAGA
Left flanking sequence: Indices 127449 -- 127948
CCAGCACCCGGTGCGGACCCGTTTGATTTTCAGCATTGACGTGATGGTGGTTAGTTCAATCCATG
ACACGTTCGATGCATATCTCGGACTACATGCACACCGGGTGGAGTTGCCCCACAATGGGGGGTAT
TGTTGCAATCAGGGTCGGCGACCCTGGAACAATAGCGGCACGAGATGACGAGATGTGCGGGGCTA
AGTTGCCGGTTGTTCCGTCGGTGTTGGGGGTGGTTCGCGTAATCCCGGCCGCACGGCCATCTCGG
GATTCCGATAAAGTTAACGCATCGTGCATTCGGGGATAATCACCGAAGGGGTAACCGATGCCAGC
GAACCATCGAAGCTAACCACCGAAGGCTCCAGCGAAGTACTATGACAGGGTGCATAATCGTGAAG
GAGCCGGGGTGATAGCTGCGTCAGGCGATTCTGGCGTAGGGTGGGGTGTCTGGTCTGCGCATATG
TTGACTCAATTAGGTTAACCGACAAATAAGGATCGTAACGGGGGT
Right flanking sequence: Indices 128002 -- 128501
TGAAGAGATGATGATTGAGAGAAGAGTGGATAACTGAGTGAATTGAGTGAAGAGTGAAATATACT
GAGTGTAACCGAGTAATCTGAGTGTAACCAAGTAATCTGAGTGTAACCGAGTGATCTGAGTAATA
CTGAGTAAACTGAGTAAACTGAGTAAACTGAGTAAACTGAGTGTTACTGAATATAATTGAATGCA
AATTATTGAAATTTTATCAATAATTTGTTACTGGGTTACTGAGTGTCTGTAGTTGTAACTGCCTC
GCTTAACTGTGTATCTGAGACGTTCGAAACCACCACTACAAACTACTCCACCAGCTCGATATCGT
GTGCGTATTAATACATCTCTCTATGTGAAGAAAAATTACCCTAGTTCCGTCTATTAAAAAAGCTC
ACTTGCCCACAACTTCCCAACCGTCCCCGGTGGTGGCGTTGTCGGCCACCAGCAACTTCTCCAAC
TTCTCCTCCACCGGCTCCTGCTGGGACTCCGGCTGCTCCTGCTTC
Found at i:128089 original size:19 final size:19
Alignment explanation
Indices: 128065--128127 Score: 108
Period size: 19 Copynumber: 3.3 Consensus size: 19
128055 GTGAAATATA
128065 CTGAGTGTAACCGAGTAAT
1 CTGAGTGTAACCGAGTAAT
*
128084 CTGAGTGTAACCAAGTAAT
1 CTGAGTGTAACCGAGTAAT
*
128103 CTGAGTGTAACCGAGTGAT
1 CTGAGTGTAACCGAGTAAT
128122 CTGAGT
1 CTGAGT
128128 AATACTGAGT
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
19 41 1.00
ACGTcount: A:0.30, C:0.16, G:0.27, T:0.27
Consensus pattern (19 bp):
CTGAGTGTAACCGAGTAAT
Left flanking sequence: Indices 127565 -- 128064
ACAATGGGGGGTATTGTTGCAATCAGGGTCGGCGACCCTGGAACAATAGCGGCACGAGATGACGA
GATGTGCGGGGCTAAGTTGCCGGTTGTTCCGTCGGTGTTGGGGGTGGTTCGCGTAATCCCGGCCG
CACGGCCATCTCGGGATTCCGATAAAGTTAACGCATCGTGCATTCGGGGATAATCACCGAAGGGG
TAACCGATGCCAGCGAACCATCGAAGCTAACCACCGAAGGCTCCAGCGAAGTACTATGACAGGGT
GCATAATCGTGAAGGAGCCGGGGTGATAGCTGCGTCAGGCGATTCTGGCGTAGGGTGGGGTGTCT
GGTCTGCGCATATGTTGACTCAATTAGGTTAACCGACAAATAAGGATCGTAACGGGGGTGAATGA
ACTGAGTGGAGAGAATAACTGAGTTGGGAGAGTAACTGAGTGAAGAGTGAAGAGATGATGATTGA
GAGAAGAGTGGATAACTGAGTGAATTGAGTGAAGAGTGAAATATA
Right flanking sequence: Indices 128128 -- 128627
AATACTGAGTAAACTGAGTAAACTGAGTAAACTGAGTAAACTGAGTGTTACTGAATATAATTGAA
TGCAAATTATTGAAATTTTATCAATAATTTGTTACTGGGTTACTGAGTGTCTGTAGTTGTAACTG
CCTCGCTTAACTGTGTATCTGAGACGTTCGAAACCACCACTACAAACTACTCCACCAGCTCGATA
TCGTGTGCGTATTAATACATCTCTCTATGTGAAGAAAAATTACCCTAGTTCCGTCTATTAAAAAA
GCTCACTTGCCCACAACTTCCCAACCGTCCCCGGTGGTGGCGTTGTCGGCCACCAGCAACTTCTC
CAACTTCTCCTCCACCGGCTCCTGCTGGGACTCCGGCTGCTCCTGCTTCGGCTCGTCGTCCTCGT
CGTCGTCGTCCACCGACAACACCGCAAACAGCAGCTGCTTGGGCTTCTCCTCCTGGGGCTTCTTG
GCCTCGGCAGCAGGCTTGCGCGCAGGCAACGCCTGGCCACGCGAC
Found at i:128128 original size:28 final size:27
Alignment explanation
Indices: 128097--128173 Score: 82
Period size: 28 Copynumber: 2.8 Consensus size: 27
128087 AGTGTAACCA
* * *
128097 AGTAATCTGAGTGTAACCGAGTGATCTG
1 AGTAATCTGAGT-AAACCGAGTAAACTG
*
128125 AGTAATACTGAGTAAACTGAGTAAACTG
1 AGTAAT-CTGAGTAAACCGAGTAAACTG
* *
128153 AGTAAACTGAGTAAACTGAGT
1 AGTAATCTGAGTAAACCGAGT
128174 GTTACTGAAT
Statistics
Matches: 43, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
27 15 0.35
28 22 0.51
29 6 0.14
ACGTcount: A:0.38, C:0.12, G:0.25, T:0.26
Consensus pattern (27 bp):
AGTAATCTGAGTAAACCGAGTAAACTG
Left flanking sequence: Indices 127597 -- 128096
CGACCCTGGAACAATAGCGGCACGAGATGACGAGATGTGCGGGGCTAAGTTGCCGGTTGTTCCGT
CGGTGTTGGGGGTGGTTCGCGTAATCCCGGCCGCACGGCCATCTCGGGATTCCGATAAAGTTAAC
GCATCGTGCATTCGGGGATAATCACCGAAGGGGTAACCGATGCCAGCGAACCATCGAAGCTAACC
ACCGAAGGCTCCAGCGAAGTACTATGACAGGGTGCATAATCGTGAAGGAGCCGGGGTGATAGCTG
CGTCAGGCGATTCTGGCGTAGGGTGGGGTGTCTGGTCTGCGCATATGTTGACTCAATTAGGTTAA
CCGACAAATAAGGATCGTAACGGGGGTGAATGAACTGAGTGGAGAGAATAACTGAGTTGGGAGAG
TAACTGAGTGAAGAGTGAAGAGATGATGATTGAGAGAAGAGTGGATAACTGAGTGAATTGAGTGA
AGAGTGAAATATACTGAGTGTAACCGAGTAATCTGAGTGTAACCA
Right flanking sequence: Indices 128174 -- 128673
GTTACTGAATATAATTGAATGCAAATTATTGAAATTTTATCAATAATTTGTTACTGGGTTACTGA
GTGTCTGTAGTTGTAACTGCCTCGCTTAACTGTGTATCTGAGACGTTCGAAACCACCACTACAAA
CTACTCCACCAGCTCGATATCGTGTGCGTATTAATACATCTCTCTATGTGAAGAAAAATTACCCT
AGTTCCGTCTATTAAAAAAGCTCACTTGCCCACAACTTCCCAACCGTCCCCGGTGGTGGCGTTGT
CGGCCACCAGCAACTTCTCCAACTTCTCCTCCACCGGCTCCTGCTGGGACTCCGGCTGCTCCTGC
TTCGGCTCGTCGTCCTCGTCGTCGTCGTCCACCGACAACACCGCAAACAGCAGCTGCTTGGGCTT
CTCCTCCTGGGGCTTCTTGGCCTCGGCAGCAGGCTTGCGCGCAGGCAACGCCTGGCCACGCGACC
AGTCGAGCTCGGGCTCCTTGCGGGCCTCACGGGTCTCCCGCGAGA
Found at i:128139 original size:38 final size:38
Alignment explanation
Indices: 128064--128173 Score: 118
Period size: 38 Copynumber: 2.9 Consensus size: 38
128054 AGTGAAATAT
* **
128064 ACTGAGTGTAACCGAGTAATCTGAGT-GTAACCAAGTAA
1 ACTGAGTGTAACCGAGTAATCTGAGTAAT-ACTGAGTAA
* *
128102 TCTGAGTGTAACCGAGTGATCTGAGTAATACTGAGTAA
1 ACTGAGTGTAACCGAGTAATCTGAGTAATACTGAGTAA
* * *
128140 ACTGAGT-AAACTGAGTAAACTGAGTAA-ACTGAGT
1 ACTGAGTGTAACCGAGTAATCTGAGTAATACTGAGT
128174 GTTACTGAAT
Statistics
Matches: 61, Mismatches: 10, Indels: 4
0.81 0.13 0.05
Matches are distributed among these distances:
36 7 0.11
37 16 0.26
38 37 0.61
39 1 0.02
ACGTcount: A:0.36, C:0.14, G:0.25, T:0.25
Consensus pattern (38 bp):
ACTGAGTGTAACCGAGTAATCTGAGTAATACTGAGTAA
Left flanking sequence: Indices 127564 -- 128063
CACAATGGGGGGTATTGTTGCAATCAGGGTCGGCGACCCTGGAACAATAGCGGCACGAGATGACG
AGATGTGCGGGGCTAAGTTGCCGGTTGTTCCGTCGGTGTTGGGGGTGGTTCGCGTAATCCCGGCC
GCACGGCCATCTCGGGATTCCGATAAAGTTAACGCATCGTGCATTCGGGGATAATCACCGAAGGG
GTAACCGATGCCAGCGAACCATCGAAGCTAACCACCGAAGGCTCCAGCGAAGTACTATGACAGGG
TGCATAATCGTGAAGGAGCCGGGGTGATAGCTGCGTCAGGCGATTCTGGCGTAGGGTGGGGTGTC
TGGTCTGCGCATATGTTGACTCAATTAGGTTAACCGACAAATAAGGATCGTAACGGGGGTGAATG
AACTGAGTGGAGAGAATAACTGAGTTGGGAGAGTAACTGAGTGAAGAGTGAAGAGATGATGATTG
AGAGAAGAGTGGATAACTGAGTGAATTGAGTGAAGAGTGAAATAT
Right flanking sequence: Indices 128174 -- 128673
GTTACTGAATATAATTGAATGCAAATTATTGAAATTTTATCAATAATTTGTTACTGGGTTACTGA
GTGTCTGTAGTTGTAACTGCCTCGCTTAACTGTGTATCTGAGACGTTCGAAACCACCACTACAAA
CTACTCCACCAGCTCGATATCGTGTGCGTATTAATACATCTCTCTATGTGAAGAAAAATTACCCT
AGTTCCGTCTATTAAAAAAGCTCACTTGCCCACAACTTCCCAACCGTCCCCGGTGGTGGCGTTGT
CGGCCACCAGCAACTTCTCCAACTTCTCCTCCACCGGCTCCTGCTGGGACTCCGGCTGCTCCTGC
TTCGGCTCGTCGTCCTCGTCGTCGTCGTCCACCGACAACACCGCAAACAGCAGCTGCTTGGGCTT
CTCCTCCTGGGGCTTCTTGGCCTCGGCAGCAGGCTTGCGCGCAGGCAACGCCTGGCCACGCGACC
AGTCGAGCTCGGGCTCCTTGCGGGCCTCACGGGTCTCCCGCGAGA
Found at i:128143 original size:9 final size:9
Alignment explanation
Indices: 128122--128173 Score: 95
Period size: 9 Copynumber: 5.7 Consensus size: 9
128112 ACCGAGTGAT
128122 CTGAGTAATA
1 CTGAGTAA-A
128132 CTGAGTAAA
1 CTGAGTAAA
128141 CTGAGTAAA
1 CTGAGTAAA
128150 CTGAGTAAA
1 CTGAGTAAA
128159 CTGAGTAAA
1 CTGAGTAAA
128168 CTGAGT
1 CTGAGT
128174 GTTACTGAAT
Statistics
Matches: 42, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
9 34 0.81
10 8 0.19
ACGTcount: A:0.40, C:0.12, G:0.23, T:0.25
Consensus pattern (9 bp):
CTGAGTAAA
Left flanking sequence: Indices 127622 -- 128121
GATGACGAGATGTGCGGGGCTAAGTTGCCGGTTGTTCCGTCGGTGTTGGGGGTGGTTCGCGTAAT
CCCGGCCGCACGGCCATCTCGGGATTCCGATAAAGTTAACGCATCGTGCATTCGGGGATAATCAC
CGAAGGGGTAACCGATGCCAGCGAACCATCGAAGCTAACCACCGAAGGCTCCAGCGAAGTACTAT
GACAGGGTGCATAATCGTGAAGGAGCCGGGGTGATAGCTGCGTCAGGCGATTCTGGCGTAGGGTG
GGGTGTCTGGTCTGCGCATATGTTGACTCAATTAGGTTAACCGACAAATAAGGATCGTAACGGGG
GTGAATGAACTGAGTGGAGAGAATAACTGAGTTGGGAGAGTAACTGAGTGAAGAGTGAAGAGATG
ATGATTGAGAGAAGAGTGGATAACTGAGTGAATTGAGTGAAGAGTGAAATATACTGAGTGTAACC
GAGTAATCTGAGTGTAACCAAGTAATCTGAGTGTAACCGAGTGAT
Right flanking sequence: Indices 128174 -- 128673
GTTACTGAATATAATTGAATGCAAATTATTGAAATTTTATCAATAATTTGTTACTGGGTTACTGA
GTGTCTGTAGTTGTAACTGCCTCGCTTAACTGTGTATCTGAGACGTTCGAAACCACCACTACAAA
CTACTCCACCAGCTCGATATCGTGTGCGTATTAATACATCTCTCTATGTGAAGAAAAATTACCCT
AGTTCCGTCTATTAAAAAAGCTCACTTGCCCACAACTTCCCAACCGTCCCCGGTGGTGGCGTTGT
CGGCCACCAGCAACTTCTCCAACTTCTCCTCCACCGGCTCCTGCTGGGACTCCGGCTGCTCCTGC
TTCGGCTCGTCGTCCTCGTCGTCGTCGTCCACCGACAACACCGCAAACAGCAGCTGCTTGGGCTT
CTCCTCCTGGGGCTTCTTGGCCTCGGCAGCAGGCTTGCGCGCAGGCAACGCCTGGCCACGCGACC
AGTCGAGCTCGGGCTCCTTGCGGGCCTCACGGGTCTCCCGCGAGA
Found at i:130557 original size:9 final size:9
Alignment explanation
Indices: 130543--130576 Score: 50
Period size: 9 Copynumber: 3.8 Consensus size: 9
130533 CGTCCGGCGG
130543 CGCCAGCTC
1 CGCCAGCTC
130552 CGCCAGCTC
1 CGCCAGCTC
*
130561 TGCCAGCTC
1 CGCCAGCTC
*
130570 GGCCAGC
1 CGCCAGC
130577 AGCACCGGCT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
9 23 1.00
ACGTcount: A:0.12, C:0.50, G:0.26, T:0.12
Consensus pattern (9 bp):
CGCCAGCTC
Left flanking sequence: Indices 130043 -- 130542
TGGTGCTCGGCGTACAACTCGAGGATGAACCAGTTAACGATGTCCTGTTTCGAGATGCCCATGAA
CTTCCACCACAACATCTTGGGGAAGCCGCCGTACTTGCGGGTGGCCATGTCGCGCGCGCGGGCCT
CGATGCCGAGGTTGCGGACCTCGGGGTCCTCCATCAACAGCCGCACCCGCTCGCTGGGCGGCACC
AACTCCTGGAGCATCGCCCGCACCAGCGGGTCGTCGCGCAACGCCTCGAGGTCGATGGTGAAGTC
GGACGCGTTGTCGTTGGTGACGTCGTCGTCGGCGCCCGCGGTCTGCTTCTGGTAGTAGTCGCGCT
TGCACATGGGGCAGCACGCCCGCCGCTTGGTGAGCCACGGGTCCAAGCACTCGGCGTGGAACGGG
TGCCCGCACACGAGCCCGCGCACGACATCGTCGTCGTCAAACGGCTCGAGGCAGATGGCACACCC
GCCCAGCGAGAAGTGGAGGGCGTCGCTGGTGCCCTCGTCCGGCGG
Right flanking sequence: Indices 130577 -- 131076
AGCACCGGCTCCACCGGCTCCACCACCGGGTCCGTCACCGTTTTCTCGTTGGTGACCTCGCCCAG
CGGCTCCACCGGGGCCTCGATGATGTCGTCGGGCTCGGCGTGGTCCACCTGGAGCCACTGCTTGT
ATGTCTGGGTGGGGAACAACTCGTCCACCTGGGCCTCGCTCAACTTCTTCATCTTGGCAAACCGC
CCGCGGCGCCGCCGCCCGTTGCGGGTGGTGATGAAGGCGCCGCCGCGAGTCAAAAACCGCTGGTG
GAGCTCGTTGACCAAGTAGTCGTGGTGGCGCCAGATAAACTCCCACTGGGCGTCGCCCTCGTCGT
TGCCGTTGGCAAACGGTAGGGTGCGCCGGTTGAGCAGGTAGACGTGCAACCCGAACTTGGCACGG
ACAAAGTAGCGGAGGGTAAATAGCAAAAAGAGGATGCCGATGGTGCCGCCGATGGCCAGGGCGAT
GACGAAAAACACCTTGGTGTTGCCGCCCAACAGGTACAGCAGCTG
Found at i:133274 original size:12 final size:12
Alignment explanation
Indices: 133257--133287 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
133247 ATCGCCTGGC
133257 CCAGCAAGGACA
1 CCAGCAAGGACA
133269 CCAGCAAGGACA
1 CCAGCAAGGACA
133281 CCAGCAA
1 CCAGCAA
133288 AACGACTCTC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.42, C:0.35, G:0.23, T:0.00
Consensus pattern (12 bp):
CCAGCAAGGACA
Left flanking sequence: Indices 132757 -- 133256
GCGATGGCAATTATTTTACGCCGTGTCACTGGCGCTACCTAAGGCTGTCGATGCGAAGCCCTGCG
GTCTCGAATGGTAAACAAATGATCTTGTAGCGCTGGGATATACGACCAGTGGCTATTGCGATGAG
CGACGACCTCGCGGAGCTTTTTGTGTCAGAAGTAGGCTACGAATCTGGTGCGCTGTGGGGTTGTC
ACCTGACACGTCAGTGAATGGCATTTTTCAGTGGGGCATCTGTCGGTCCGCACCTGACACCGGAG
TCGAACCGACTTTAGTAGTTTGTAGCAAGATTTCAGCAAAAACAGTCGAAATTCTGTGGAATGTC
TTAGCGAGTGCCTCAAAAGTGTCAGTGCTAAAGAACCTGATGGGCATCCACCCTGTCGTAAATCT
CCGCTCGTATATTGGAGGATGCAAGATGACATGGGAGATGTGGGGTTCTTCGTAAAGCGATGAGC
TCAATGGACCTCTGCATCGACGTCACTGGAATGATATCGCCTGGC
Right flanking sequence: Indices 133288 -- 133787
AACGACTCTCAGCCTAACGCGGCCAATCAGCCTCTACAGATTCTCTATCTACAGATTCTCTACTG
ATAGGATCGTAATATTACATCATTATATGTGTACAAGTAAGCAAGCGCTTCATACTTGCGAATCG
GGGGCTATTTTTGAGCACGCTCCCGGCGTAGTTCCTGGATGTGGTCATCCCATTTCGTCAACAAC
TCGTCGCTGCGTCGATGGAGCTGGAACAGGTCCGGGTACTCAAGATCCGGGTCTTTGACAATGCA
TTTGAGCACCTTATGAATCTTTGTCTGTCGTAATAAGTCGGTGGAGACCGGGAAGTCTGCCAACT
TGTTCAAAATGAACCGGGCCATGCTGAGCTCGTCGGCAGTGGGTGGCTTGAGCCCCAGGGTGTCT
TTCGGGGTGGTGGGTTGGTTGCGTTGGATCAAACTGCGCTGCAACTTGATGCGACATTGCCATAA
CTGCTTCTGGATGTCCTCTTCCGACGGGGGTTTTTCGGTTTTCGG
Found at i:133340 original size:15 final size:15
Alignment explanation
Indices: 133320--133349 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
133310 CCAATCAGCC
133320 TCTACAGATTCTCTA
1 TCTACAGATTCTCTA
133335 TCTACAGATTCTCTA
1 TCTACAGATTCTCTA
133350 CTGATAGGAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.27, C:0.27, G:0.07, T:0.40
Consensus pattern (15 bp):
TCTACAGATTCTCTA
Left flanking sequence: Indices 132820 -- 133319
CGGTCTCGAATGGTAAACAAATGATCTTGTAGCGCTGGGATATACGACCAGTGGCTATTGCGATG
AGCGACGACCTCGCGGAGCTTTTTGTGTCAGAAGTAGGCTACGAATCTGGTGCGCTGTGGGGTTG
TCACCTGACACGTCAGTGAATGGCATTTTTCAGTGGGGCATCTGTCGGTCCGCACCTGACACCGG
AGTCGAACCGACTTTAGTAGTTTGTAGCAAGATTTCAGCAAAAACAGTCGAAATTCTGTGGAATG
TCTTAGCGAGTGCCTCAAAAGTGTCAGTGCTAAAGAACCTGATGGGCATCCACCCTGTCGTAAAT
CTCCGCTCGTATATTGGAGGATGCAAGATGACATGGGAGATGTGGGGTTCTTCGTAAAGCGATGA
GCTCAATGGACCTCTGCATCGACGTCACTGGAATGATATCGCCTGGCCCAGCAAGGACACCAGCA
AGGACACCAGCAAAACGACTCTCAGCCTAACGCGGCCAATCAGCC
Right flanking sequence: Indices 133350 -- 133849
CTGATAGGATCGTAATATTACATCATTATATGTGTACAAGTAAGCAAGCGCTTCATACTTGCGAA
TCGGGGGCTATTTTTGAGCACGCTCCCGGCGTAGTTCCTGGATGTGGTCATCCCATTTCGTCAAC
AACTCGTCGCTGCGTCGATGGAGCTGGAACAGGTCCGGGTACTCAAGATCCGGGTCTTTGACAAT
GCATTTGAGCACCTTATGAATCTTTGTCTGTCGTAATAAGTCGGTGGAGACCGGGAAGTCTGCCA
ACTTGTTCAAAATGAACCGGGCCATGCTGAGCTCGTCGGCAGTGGGTGGCTTGAGCCCCAGGGTG
TCTTTCGGGGTGGTGGGTTGGTTGCGTTGGATCAAACTGCGCTGCAACTTGATGCGACATTGCCA
TAACTGCTTCTGGATGTCCTCTTCCGACGGGGGTTTTTCGGTTTTCGGTTTCTTGGCGTTGGCGG
CGGCGGCGTCGCCCTTCCTCTTGCCATTTCGCGGTGGTGTCGGGG
Found at i:135077 original size:10 final size:10
Alignment explanation
Indices: 135064--135108 Score: 63
Period size: 10 Copynumber: 4.5 Consensus size: 10
135054 TATCCACAGC
135064 AATACCCAGT
1 AATACCCAGT
135074 AATACCCAGT
1 AATACCCAGT
*
135084 AATACCTAGT
1 AATACCCAGT
* *
135094 AATACACAAT
1 AATACCCAGT
135104 AATAC
1 AATAC
135109 ACAGCCATCC
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
10 31 1.00
ACGTcount: A:0.47, C:0.24, G:0.07, T:0.22
Consensus pattern (10 bp):
AATACCCAGT
Left flanking sequence: Indices 134564 -- 135063
GAACCGGCAAGGAAAAGGGGTCAATTGCTCACAGTGTCGTTGGCGTCGGGTCGAAAAACAATAAG
GCGCGAGAGATTCACCGCCTGGCTGTATGCACTCCAACGCCGCCCATCGGAAGGGGCCACCACCC
ACGGCGGCGGGCCGGGCGCTGGCGGGCTCGGGTGCGGATGTTTGTGGAGGCCTGTTCCGGATCGG
ACGCGGGCACGTTGGTCAGCGCCCGGCTTTTGTGTGTGTTTTCCGTGGACCGCGGAACGGGCTCG
GGCCACCACCGGCTTTTGCGTCCGGCGGGCAGAACCACCGCAATTTGGTGGCCGGGGTGTGTCGG
GTGCCGGGACCGCACGGGCAATTGCCGGGTGACTCGTCGCGGTGTTGGATGGCTGAGGGCGTGGC
CCGTGCATCCAGCCTGAAACGCACCAGGCACGCAGTACAATGGCTGCCATGGCGGATGAGATATA
CAATAAAGTACACAGAAATACCAGTGATACACAGCTATCCACAGC
Right flanking sequence: Indices 135109 -- 135608
ACAGCCATCCACAGTAGTATACACAGCTGTCGTCTAAAGGCCCCCACCGTCTGCGTCCGGCACTT
GCTGCATGTCATAGATTTTTTCGAGCGATTTGCAACCACAGAGGGTCATGGAACCAAAGGCTGAC
GACCCCAGGGGACACGATGCGGCGCCGGCGTTGCATAATGTCCCGTCGGACATCATCCCGTTGAT
GCAATCCAAGGGGAAAAAGGACGACTTTTTCTGCGATTTGACCCCCGAAAATGACCCTCGCCGCG
ACGCTCAGGTAGCCGAGATCGTCGAGTATTTCCCGCCCCCGGTGCCACCGGAGGCGCCCGACCAC
GACGCGGTCCAGATCCCGTTCATCTGGCCCCCGCCCCCGGTGGTCAACCCCGACACCCTTCCCTA
CTCGCTTTCGCAGTTCAAAACGAAGTTGGACCGGTTCGTCAAGCTCCTGAAACTCGACCGCGGGC
GCACCGGGTCCCGCAAGGGCAAGGAAGACGGGTTGCGGTACGTGT
Found at i:136158 original size:15 final size:14
Alignment explanation
Indices: 136140--136206 Score: 75
Period size: 15 Copynumber: 4.7 Consensus size: 14
136130 AGACCGACCA
136140 TGGCCACACCGTCTC
1 TGGCCACACCGTC-C
* *
136155 TGGCTACACCGGCC
1 TGGCCACACCGTCC
136169 TCGGCCACACCGTCCC
1 T-GGCCACACCGT-CC
136185 TGGCCACACC--CC
1 TGGCCACACCGTCC
136197 TGGCCACACC
1 TGGCCACACC
136207 CGCCCACACC
Statistics
Matches: 46, Mismatches: 4, Indels: 7
0.81 0.07 0.12
Matches are distributed among these distances:
12 12 0.26
14 2 0.04
15 29 0.63
16 3 0.07
ACGTcount: A:0.15, C:0.51, G:0.21, T:0.13
Consensus pattern (14 bp):
TGGCCACACCGTCC
Left flanking sequence: Indices 135640 -- 136139
CTTCATGCCGTACCCGCTCCAGGCCCACCTCGGGCTGTTGACGCCAGCAGAGGTGTTTCGCGCCA
TGCTCGACGCCAACGACAACTTGCCGCGCATCGACATGGTGGTGGCGTCGGCGGCCGGGCTGCTA
GCGGACATCAACAACCAGGTGGCGCACGAGGGGTTCGACCGGGCCCACTTCGACGCGGTGATCCA
CCAGCGCATCCAGGAGGCCAAGGCCCGCGACAGCCACGAGGCCGACTTTGGCGGGATTGACACCC
GCGACTACGTGGACGAGTTGGCCGGGCCGCTTGCGGCGCACCGCGACTGGACCGAGACCGAGGCG
TGGGCGCGGGTGCAGCTGAAGCCGAGCTACGCCCGCAAGCGCGCGCTGCCCAGCGAGGCTCCCGC
GGCCAAGCGGCGGGCCCATGCCACAACAACGGTTCACGCAACACCGTCCCACGCGGCCATGGCAC
TGTCCCACGCTGCCACATCACCCCTCGCGGCCACAAGACCGACCA
Right flanking sequence: Indices 136207 -- 136706
CGCCCACACCGTCCCGGGCGAGTTGGAGCCCGCACCCGCCACCACCCTCGCGGAAACCCCGCTCG
CCGACGTGTTGTCGGTGTCACGGGACATCACCTACGCCAACGGCATGTTCCGCGAGCGGCGGCGG
CGCGAGTTGGTGGCGGCCGCCAACGAGATCAACGCGTTCCACGACACCCACGCCCACGACCTCTT
CTGCGCCCGCAAGCACGCGCTCCAGCAGCGGTTGCACGGGCTCCAGCAGCTGCGGATCGGGTTTG
GCGACACCCGGACCGGGTGCGACGACTTGGCCCGGTACCACCGCACCCTCCTGCTCGAGCGCGAC
GACCAGTTGGTGCGGTTGAAGCTCGGGTACAACTACGAGGTGCTCAAGGCGCTGCTGGCGTTCTA
CCAGGACTCGCACCGGGTGTACCGCGACTACGTGGCCCTCATGACAAACAAGCTCGGCAAGCTCA
GGCACTTCTTCGAGTACCAGCAGCGGGTGGGCGCGGCGGCCATGG
Found at i:136177 original size:30 final size:27
Alignment explanation
Indices: 136140--136206 Score: 89
Period size: 30 Copynumber: 2.4 Consensus size: 27
136130 AGACCGACCA
* *
136140 TGGCCACACCGTCTCTGGCTACACCGGCC
1 TGGCCACACCGTCCCTGGCCACACC--CC
136169 TCGGCCACACCGTCCCTGGCCACACCCC
1 T-GGCCACACCGTCCCTGGCCACACCCC
136197 TGGCCACACC
1 TGGCCACACC
136207 CGCCCACACC
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
27 9 0.26
28 3 0.09
29 1 0.03
30 22 0.63
ACGTcount: A:0.15, C:0.51, G:0.21, T:0.13
Consensus pattern (27 bp):
TGGCCACACCGTCCCTGGCCACACCCC
Left flanking sequence: Indices 135640 -- 136139
CTTCATGCCGTACCCGCTCCAGGCCCACCTCGGGCTGTTGACGCCAGCAGAGGTGTTTCGCGCCA
TGCTCGACGCCAACGACAACTTGCCGCGCATCGACATGGTGGTGGCGTCGGCGGCCGGGCTGCTA
GCGGACATCAACAACCAGGTGGCGCACGAGGGGTTCGACCGGGCCCACTTCGACGCGGTGATCCA
CCAGCGCATCCAGGAGGCCAAGGCCCGCGACAGCCACGAGGCCGACTTTGGCGGGATTGACACCC
GCGACTACGTGGACGAGTTGGCCGGGCCGCTTGCGGCGCACCGCGACTGGACCGAGACCGAGGCG
TGGGCGCGGGTGCAGCTGAAGCCGAGCTACGCCCGCAAGCGCGCGCTGCCCAGCGAGGCTCCCGC
GGCCAAGCGGCGGGCCCATGCCACAACAACGGTTCACGCAACACCGTCCCACGCGGCCATGGCAC
TGTCCCACGCTGCCACATCACCCCTCGCGGCCACAAGACCGACCA
Right flanking sequence: Indices 136207 -- 136706
CGCCCACACCGTCCCGGGCGAGTTGGAGCCCGCACCCGCCACCACCCTCGCGGAAACCCCGCTCG
CCGACGTGTTGTCGGTGTCACGGGACATCACCTACGCCAACGGCATGTTCCGCGAGCGGCGGCGG
CGCGAGTTGGTGGCGGCCGCCAACGAGATCAACGCGTTCCACGACACCCACGCCCACGACCTCTT
CTGCGCCCGCAAGCACGCGCTCCAGCAGCGGTTGCACGGGCTCCAGCAGCTGCGGATCGGGTTTG
GCGACACCCGGACCGGGTGCGACGACTTGGCCCGGTACCACCGCACCCTCCTGCTCGAGCGCGAC
GACCAGTTGGTGCGGTTGAAGCTCGGGTACAACTACGAGGTGCTCAAGGCGCTGCTGGCGTTCTA
CCAGGACTCGCACCGGGTGTACCGCGACTACGTGGCCCTCATGACAAACAAGCTCGGCAAGCTCA
GGCACTTCTTCGAGTACCAGCAGCGGGTGGGCGCGGCGGCCATGG
Found at i:136199 original size:12 final size:12
Alignment explanation
Indices: 136182--136207 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
136172 GCCACACCGT
136182 CCCTGGCCACAC
1 CCCTGGCCACAC
136194 CCCTGGCCACAC
1 CCCTGGCCACAC
136206 CC
1 CC
136208 GCCCACACCG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.15, C:0.62, G:0.15, T:0.08
Consensus pattern (12 bp):
CCCTGGCCACAC
Left flanking sequence: Indices 135682 -- 136181
GCCAGCAGAGGTGTTTCGCGCCATGCTCGACGCCAACGACAACTTGCCGCGCATCGACATGGTGG
TGGCGTCGGCGGCCGGGCTGCTAGCGGACATCAACAACCAGGTGGCGCACGAGGGGTTCGACCGG
GCCCACTTCGACGCGGTGATCCACCAGCGCATCCAGGAGGCCAAGGCCCGCGACAGCCACGAGGC
CGACTTTGGCGGGATTGACACCCGCGACTACGTGGACGAGTTGGCCGGGCCGCTTGCGGCGCACC
GCGACTGGACCGAGACCGAGGCGTGGGCGCGGGTGCAGCTGAAGCCGAGCTACGCCCGCAAGCGC
GCGCTGCCCAGCGAGGCTCCCGCGGCCAAGCGGCGGGCCCATGCCACAACAACGGTTCACGCAAC
ACCGTCCCACGCGGCCATGGCACTGTCCCACGCTGCCACATCACCCCTCGCGGCCACAAGACCGA
CCATGGCCACACCGTCTCTGGCTACACCGGCCTCGGCCACACCGT
Right flanking sequence: Indices 136208 -- 136707
GCCCACACCGTCCCGGGCGAGTTGGAGCCCGCACCCGCCACCACCCTCGCGGAAACCCCGCTCGC
CGACGTGTTGTCGGTGTCACGGGACATCACCTACGCCAACGGCATGTTCCGCGAGCGGCGGCGGC
GCGAGTTGGTGGCGGCCGCCAACGAGATCAACGCGTTCCACGACACCCACGCCCACGACCTCTTC
TGCGCCCGCAAGCACGCGCTCCAGCAGCGGTTGCACGGGCTCCAGCAGCTGCGGATCGGGTTTGG
CGACACCCGGACCGGGTGCGACGACTTGGCCCGGTACCACCGCACCCTCCTGCTCGAGCGCGACG
ACCAGTTGGTGCGGTTGAAGCTCGGGTACAACTACGAGGTGCTCAAGGCGCTGCTGGCGTTCTAC
CAGGACTCGCACCGGGTGTACCGCGACTACGTGGCCCTCATGACAAACAAGCTCGGCAAGCTCAG
GCACTTCTTCGAGTACCAGCAGCGGGTGGGCGCGGCGGCCATGGC
Found at i:176554 original size:13 final size:13
Alignment explanation
Indices: 176538--176562 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
176528 AGAAAACAGA
176538 AAAAAAAAAGAAG
1 AAAAAAAAAGAAG
176551 AAAAAAAAAGAA
1 AAAAAAAAAGAA
176563 ATGAGGAAAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00
Consensus pattern (13 bp):
AAAAAAAAAGAAG
Left flanking sequence: Indices 176038 -- 176537
GCGTCTTTGATGATTGAGATCACCGCGTCTAACGTTGTGGGGAAAATTTTTTTGGTCATGGAGTG
GTAAAATGCAGGTTGAGATGTCGTTCCTTTTTCCGTGAACTTGTTGCGAGATCCGAAGAGGAGAA
GAGAGGTCCGAAGGATGCGCCACTTTACCAAGCAAACAATGTAACTACCTGGCATTCAAAATGGT
TCAACTTACGTTTCGGAGAAGGTCTTAACTCGTGGTTCTAAGTTTTGTCGGCGTCTGCCTCACAC
GCTACTGCAAGCCCCATTTCTTTTTTTCTTTTTTTCTCTTCCTGCTGATTTGGACCATTCGCGCG
TTCTAAGCGATAGCGCCGGTTGATATCTACAAGTAGACTAAGCTTACACACACATGGGTCGGGAG
TGAACTTCAAAAAAGACGCTTGACATGACTCAGTGATTGTTCAAGTTACAGGTCGAACGCCGAAG
ACCTCGGCCCACAACTCGGGTCAATGACCGAATTTAGAAAACAGA
Right flanking sequence: Indices 176563 -- 177062
ATGAGGAAAGAAACAGATGCAGTGCGCTTTTATAAAAGGCAAAACATCCCAGGATGAAGATCCAT
ACCCCAAATTAAATGTCACTTTACCACCCCTCATCACGTTCTATGAGTCTGCGGGTCAATTGTTT
GACTCCACATGATGAAATCGCAGTTAAGAAAGATGTCGCGCCTTATCCCCAATTCGCGGTCCAGA
CAACGATCTTGTCCCCACCATTGTCTCCATACCAAAGACTGCTGCTGATCTCCACCCCGATTACC
GAGCCCAAGCTGTATCTCAACAACCGTGAATTCAAGTTAGAGAATCACCAGGACTACAAACTCAC
CATCAGCGCTTGGGGAAATTTAACTCCAAACTACAAACAATCGGTCGCGCGCTTTTTAGGCGAGT
ATGCGGTTTTGAGCCAACTGCAGCGTCACGAAACCATTGCACGTAAGCATTTGAAACGTCGTCTT
GCACCCGCTGCCTCTGTGGCGACTGAGCTGGACACTGATTTCAGT
Found at i:198767 original size:28 final size:28
Alignment explanation
Indices: 198727--198825 Score: 135
Period size: 28 Copynumber: 3.4 Consensus size: 28
198717 CGCCAAGGAT
198727 GCCTAGTTTTTACACTGCCTCCACCGAC
1 GCCTAGTTTTTACACTGCCTCCACCGAC
198755 GCCTAGTTTTTACACTGCCTCCACCGAC
1 GCCTAGTTTTTACACTGCCTCCACCGAC
* * * *
198783 GCCTAGTTCTTACACCGCCACCACCCCCACC
1 GCCTAGTTTTTACACTGCCTCCA--CCGA-C
198814 GCCTAGTTTTTA
1 GCCTAGTTTTTA
198826 TAGTTTAAGA
Statistics
Matches: 63, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
28 48 0.76
30 3 0.05
31 12 0.19
ACGTcount: A:0.18, C:0.41, G:0.13, T:0.27
Consensus pattern (28 bp):
GCCTAGTTTTTACACTGCCTCCACCGAC
Left flanking sequence: Indices 198227 -- 198726
CTGGTGGCGGCCGACCACCTGACGGCGGACTTGTTGCCCAACTTGAAGGAGGGGTTCGACCCCAA
GGCCAAGTTCAAGCACGCCATCGAGATCGTCAAGCTCAACAACCGCATTGCCAAGTTGAAGTCGA
TGCAGACCGACGAGGACGACGACCCCACCGAGATCGGGTTCTTCGACCTGGACGGGTCGGTGGTG
AACCCGCCGCCCGACCACGACGACCAGCTGCTGCGCGGGTCGGCGCTTGACTCGTGGCTGACGCT
TCTGAACTCGCTCTCGAAGGTGGCCCAGGTGGACGACGAGTCCAAGCTGCTGTTGTCCAACGAGA
AGGCCCCGACCAAGAACAAGGCCGCGGCCGGGGCGTTTATCCAGTTGGTGCAGGCGGCCAGCACC
AACCGCGACCGGGTGTTGTCGTACCAGGACGGCAAGGGCGGGAAGGACGCGAAGGGCGCTGCCGC
TACCGACGCTGCCACCACGGATGCCTAGTTTCTACCGCCAAGGAT
Right flanking sequence: Indices 198826 -- 199325
TAGTTTAAGATTGAATCAATAACCCGTTGGTGTGTCTTGGTGTTTTTGGTGTTTTTGGTGCGTTT
TTCCGCCCCGCACCCTGTGCGAGGCTGCGAAATTTGACGCGCGAAAAATCACCGCCAACAACATC
GGGCATGGACACGAGCTGGCTAGACCGGCCCGACAAGACGGAGGAGGCCAAGGGCACCTTCGAGG
AGATCCGCGACTGCATATACACCGGGAAGCAGTTGGGCAACCTGGGCCAGGCCGAGCACATGCTG
TGCCAGTGCAGCGAGGAGTGGCTGGCCAAGGGCAAGCGGAACATGGCGTGTGGCGAGCGGCTGGG
GTGCATCAACCGCGCCACCCTGGTGGAGTGCATCGACGGCGGCGCCTGTGGCGACCGGTGCCGCA
ACCAGCGGTTCCAGCGGCACCAGTACGCGCCGCTCGCGGTGGTGGACGCGGGCCAGAAGGGGTAC
GGGGTGCGGGCCCAGGCGGCCATCAAGCAGGGCACGTTCATCTAC
Found at i:198892 original size:11 final size:9
Alignment explanation
Indices: 198852--198885 Score: 50
Period size: 9 Copynumber: 3.7 Consensus size: 9
198842 CAATAACCCG
*
198852 TTGGTGTGTC
1 TTGGTGT-TT
198862 TTGGTGTTT
1 TTGGTGTTT
198871 TTGGTGTTT
1 TTGGTGTTT
198880 TTGGTG
1 TTGGTG
198886 CGTTTTTCCG
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
9 16 0.70
10 7 0.30
ACGTcount: A:0.00, C:0.03, G:0.38, T:0.59
Consensus pattern (9 bp):
TTGGTGTTT
Left flanking sequence: Indices 198352 -- 198851
GTCGATGCAGACCGACGAGGACGACGACCCCACCGAGATCGGGTTCTTCGACCTGGACGGGTCGG
TGGTGAACCCGCCGCCCGACCACGACGACCAGCTGCTGCGCGGGTCGGCGCTTGACTCGTGGCTG
ACGCTTCTGAACTCGCTCTCGAAGGTGGCCCAGGTGGACGACGAGTCCAAGCTGCTGTTGTCCAA
CGAGAAGGCCCCGACCAAGAACAAGGCCGCGGCCGGGGCGTTTATCCAGTTGGTGCAGGCGGCCA
GCACCAACCGCGACCGGGTGTTGTCGTACCAGGACGGCAAGGGCGGGAAGGACGCGAAGGGCGCT
GCCGCTACCGACGCTGCCACCACGGATGCCTAGTTTCTACCGCCAAGGATGCCTAGTTTTTACAC
TGCCTCCACCGACGCCTAGTTTTTACACTGCCTCCACCGACGCCTAGTTCTTACACCGCCACCAC
CCCCACCGCCTAGTTTTTATAGTTTAAGATTGAATCAATAACCCG
Right flanking sequence: Indices 198886 -- 199385
CGTTTTTCCGCCCCGCACCCTGTGCGAGGCTGCGAAATTTGACGCGCGAAAAATCACCGCCAACA
ACATCGGGCATGGACACGAGCTGGCTAGACCGGCCCGACAAGACGGAGGAGGCCAAGGGCACCTT
CGAGGAGATCCGCGACTGCATATACACCGGGAAGCAGTTGGGCAACCTGGGCCAGGCCGAGCACA
TGCTGTGCCAGTGCAGCGAGGAGTGGCTGGCCAAGGGCAAGCGGAACATGGCGTGTGGCGAGCGG
CTGGGGTGCATCAACCGCGCCACCCTGGTGGAGTGCATCGACGGCGGCGCCTGTGGCGACCGGTG
CCGCAACCAGCGGTTCCAGCGGCACCAGTACGCGCCGCTCGCGGTGGTGGACGCGGGCCAGAAGG
GGTACGGGGTGCGGGCCCAGGCGGCCATCAAGCAGGGCACGTTCATCTACGAGTACATCGGCGAG
GTCATCCCCGAGGACGAGTTCCGCCAGCGCATGGTGGCGTACGAC
Found at i:201273 original size:32 final size:32
Alignment explanation
Indices: 201193--201315 Score: 133
Period size: 32 Copynumber: 3.8 Consensus size: 32
201183 GGTACTATGA
* * **
201193 TATTCATGGGTACCCTATTCGGTACTATGCTATGC
1 TATTCATGGGCACCCTACTC-G-ACCCTGCTAT-C
* *
201228 TATTCATGTGCACCCTACTCAACCCTGCTATC
1 TATTCATGGGCACCCTACTCGACCCTGCTATC
**
201260 TATTCATGGGCACCCTACTCGACCCTAATATC
1 TATTCATGGGCACCCTACTCGACCCTGCTATC
201292 TATTCAT-GG-ACCCTACTCGACCCT
1 TATTCATGGGCACCCTACTCGACCCT
201316 AATATTGGAC
Statistics
Matches: 78, Mismatches: 10, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
30 15 0.19
31 2 0.03
32 36 0.46
33 8 0.10
35 17 0.22
ACGTcount: A:0.22, C:0.33, G:0.14, T:0.32
Consensus pattern (32 bp):
TATTCATGGGCACCCTACTCGACCCTGCTATC
Left flanking sequence: Indices 200693 -- 201192
GGAGCAGCGGCTTGCGGCCAAGCGCGAGAAACACCGGCTCATGGCCCAGGGCAAGAAGGGCAAGG
CGACGCCGCAGCAGCAGTGGGTGCGGGTGTTGGCCAAGCACGTGCCCAACATGATCCGCAAGTAC
GAGCTGGAGGTGGGCCACGACAACATCAAGGGGTGTGGGCGCGACATCGTCAACCAGTTGGCGGA
GAAGGAGGTGAAAAAGGGCAACGAGCCGCCGGCGGAGTTGGACGACAAGCGCCTCAAAAAGATGA
AGGTGTACTCCAAGGAGTTTATGGACAAGTTCCGCAAGAAGCTCGCTGCCAAAAAGCACCGGCGG
CGGGCCACCGACAATGGCGACGAGCCGCCGGCGAAGCGGGCCAAGCCCGATGCATGAAAATGCTT
GTAATATACGTCAAACTAACGGCCTGTCTAGGTGCACGCGGCTACGCGGCACTATACTATTGTGC
ACCTACTCGGCACTTCTATTCATGTGCACCTACTCGGTACTATGA
Right flanking sequence: Indices 201316 -- 201815
AATATTGGACCCTACTCGATCCTAATAACTATTCATGTGCACCCTCGACCCTAATAACTATTCAT
CCCTACTCGACCCTAATAACAATTCCACCATAACCATTCCTGTGCACCTTCTCGGCACCATAACT
ATTCCACCATAACTATTCATGTGCATCTACTCAGCACCTACTCGGCACTCGACACCTACTCGACA
CCTACACCCTAACTATTCATGTGTTTATGCAAATACTCATATCTCGTTAGCCTACTTGCGCTCGA
GGAGCTCGGGCAAATGCTCAATCGACTCCGACCCAAAGATGATCTGGTACGTCGACTCAAACAAC
GGGAACTCCGACACCTTGCCGGTGTTGACAAGGAGCTCGTGCACCTCCTTGGCGGTGATGATCCC
CTGCGACAGCTGCCCGTTCAACAACTTCTTCTCGGCCTCCGCCGCCAGCGACCCGGTCTCGGCCA
TGTAGCGGCCCACCTTGACGTTACGCCCGCCCAGGCAGGTGGTGA
Found at i:201326 original size:23 final size:23
Alignment explanation
Indices: 201298--201342 Score: 81
Period size: 23 Copynumber: 2.0 Consensus size: 23
201288 TATCTATTCA
201298 TGGACCCTACTCGACCCTAATAT
1 TGGACCCTACTCGACCCTAATAT
*
201321 TGGACCCTACTCGATCCTAATA
1 TGGACCCTACTCGACCCTAATA
201343 ACTATTCATG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.27, C:0.33, G:0.13, T:0.27
Consensus pattern (23 bp):
TGGACCCTACTCGACCCTAATAT
Left flanking sequence: Indices 200798 -- 201297
CGTGCCCAACATGATCCGCAAGTACGAGCTGGAGGTGGGCCACGACAACATCAAGGGGTGTGGGC
GCGACATCGTCAACCAGTTGGCGGAGAAGGAGGTGAAAAAGGGCAACGAGCCGCCGGCGGAGTTG
GACGACAAGCGCCTCAAAAAGATGAAGGTGTACTCCAAGGAGTTTATGGACAAGTTCCGCAAGAA
GCTCGCTGCCAAAAAGCACCGGCGGCGGGCCACCGACAATGGCGACGAGCCGCCGGCGAAGCGGG
CCAAGCCCGATGCATGAAAATGCTTGTAATATACGTCAAACTAACGGCCTGTCTAGGTGCACGCG
GCTACGCGGCACTATACTATTGTGCACCTACTCGGCACTTCTATTCATGTGCACCTACTCGGTAC
TATGATATTCATGGGTACCCTATTCGGTACTATGCTATGCTATTCATGTGCACCCTACTCAACCC
TGCTATCTATTCATGGGCACCCTACTCGACCCTAATATCTATTCA
Right flanking sequence: Indices 201343 -- 201842
ACTATTCATGTGCACCCTCGACCCTAATAACTATTCATCCCTACTCGACCCTAATAACAATTCCA
CCATAACCATTCCTGTGCACCTTCTCGGCACCATAACTATTCCACCATAACTATTCATGTGCATC
TACTCAGCACCTACTCGGCACTCGACACCTACTCGACACCTACACCCTAACTATTCATGTGTTTA
TGCAAATACTCATATCTCGTTAGCCTACTTGCGCTCGAGGAGCTCGGGCAAATGCTCAATCGACT
CCGACCCAAAGATGATCTGGTACGTCGACTCAAACAACGGGAACTCCGACACCTTGCCGGTGTTG
ACAAGGAGCTCGTGCACCTCCTTGGCGGTGATGATCCCCTGCGACAGCTGCCCGTTCAACAACTT
CTTCTCGGCCTCCGCCGCCAGCGACCCGGTCTCGGCCATGTAGCGGCCCACCTTGACGTTACGCC
CGCCCAGGCAGGTGGTGATCAAGTCGGCAACACCCGCCAGCTCCT
Found at i:201396 original size:56 final size:52
Alignment explanation
Indices: 201269--201405 Score: 152
Period size: 53 Copynumber: 2.5 Consensus size: 52
201259 CTATTCATGG
*
201269 GCACCCTACTCGACCCTAATATCTATTCATGGACCCTACTCGACCCTAATATT
1 GCACCCTACTCGACCCTAATAACTATTCATGGACCC-ACTCGACCCTAATATT
* *
201322 GGACCCTACTCGATCCTAATAACTATTCATGTG-CACC-CTCGACCCTAATAACTAT
1 GCACCCTACTCGACCCTAATAACTATTCATG-GAC-CCACTCGACCCTAAT-A-T-T
* *
201377 TCATCCCTACTCGACCCTAATAACAATTC
1 GCA-CCCTACTCGACCCTAATAACTATTC
201406 CACCATAACC
Statistics
Matches: 71, Mismatches: 7, Indels: 9
0.82 0.08 0.10
Matches are distributed among these distances:
52 12 0.17
53 30 0.42
54 4 0.06
55 2 0.03
56 23 0.32
ACGTcount: A:0.28, C:0.35, G:0.09, T:0.28
Consensus pattern (52 bp):
GCACCCTACTCGACCCTAATAACTATTCATGGACCCACTCGACCCTAATATT
Left flanking sequence: Indices 200769 -- 201268
CAGCAGTGGGTGCGGGTGTTGGCCAAGCACGTGCCCAACATGATCCGCAAGTACGAGCTGGAGGT
GGGCCACGACAACATCAAGGGGTGTGGGCGCGACATCGTCAACCAGTTGGCGGAGAAGGAGGTGA
AAAAGGGCAACGAGCCGCCGGCGGAGTTGGACGACAAGCGCCTCAAAAAGATGAAGGTGTACTCC
AAGGAGTTTATGGACAAGTTCCGCAAGAAGCTCGCTGCCAAAAAGCACCGGCGGCGGGCCACCGA
CAATGGCGACGAGCCGCCGGCGAAGCGGGCCAAGCCCGATGCATGAAAATGCTTGTAATATACGT
CAAACTAACGGCCTGTCTAGGTGCACGCGGCTACGCGGCACTATACTATTGTGCACCTACTCGGC
ACTTCTATTCATGTGCACCTACTCGGTACTATGATATTCATGGGTACCCTATTCGGTACTATGCT
ATGCTATTCATGTGCACCCTACTCAACCCTGCTATCTATTCATGG
Right flanking sequence: Indices 201406 -- 201905
CACCATAACCATTCCTGTGCACCTTCTCGGCACCATAACTATTCCACCATAACTATTCATGTGCA
TCTACTCAGCACCTACTCGGCACTCGACACCTACTCGACACCTACACCCTAACTATTCATGTGTT
TATGCAAATACTCATATCTCGTTAGCCTACTTGCGCTCGAGGAGCTCGGGCAAATGCTCAATCGA
CTCCGACCCAAAGATGATCTGGTACGTCGACTCAAACAACGGGAACTCCGACACCTTGCCGGTGT
TGACAAGGAGCTCGTGCACCTCCTTGGCGGTGATGATCCCCTGCGACAGCTGCCCGTTCAACAAC
TTCTTCTCGGCCTCCGCCGCCAGCGACCCGGTCTCGGCCATGTAGCGGCCCACCTTGACGTTACG
CCCGCCCAGGCAGGTGGTGATCAAGTCGGCAACACCCGCCAGCTCCTGGGTGAACGTCTGCGCCC
GCGAGTCGGGGAAGAACGTTTCCGAGAACTTGACGGTCTCGAGAA
Found at i:201455 original size:14 final size:14
Alignment explanation
Indices: 201436--201463 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
201426 ACCTTCTCGG
201436 CACCATAACTATTC
1 CACCATAACTATTC
201450 CACCATAACTATTC
1 CACCATAACTATTC
201464 ATGTGCATCT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.36, G:0.00, T:0.29
Consensus pattern (14 bp):
CACCATAACTATTC
Left flanking sequence: Indices 200936 -- 201435
GCGCCTCAAAAAGATGAAGGTGTACTCCAAGGAGTTTATGGACAAGTTCCGCAAGAAGCTCGCTG
CCAAAAAGCACCGGCGGCGGGCCACCGACAATGGCGACGAGCCGCCGGCGAAGCGGGCCAAGCCC
GATGCATGAAAATGCTTGTAATATACGTCAAACTAACGGCCTGTCTAGGTGCACGCGGCTACGCG
GCACTATACTATTGTGCACCTACTCGGCACTTCTATTCATGTGCACCTACTCGGTACTATGATAT
TCATGGGTACCCTATTCGGTACTATGCTATGCTATTCATGTGCACCCTACTCAACCCTGCTATCT
ATTCATGGGCACCCTACTCGACCCTAATATCTATTCATGGACCCTACTCGACCCTAATATTGGAC
CCTACTCGATCCTAATAACTATTCATGTGCACCCTCGACCCTAATAACTATTCATCCCTACTCGA
CCCTAATAACAATTCCACCATAACCATTCCTGTGCACCTTCTCGG
Right flanking sequence: Indices 201464 -- 201963
ATGTGCATCTACTCAGCACCTACTCGGCACTCGACACCTACTCGACACCTACACCCTAACTATTC
ATGTGTTTATGCAAATACTCATATCTCGTTAGCCTACTTGCGCTCGAGGAGCTCGGGCAAATGCT
CAATCGACTCCGACCCAAAGATGATCTGGTACGTCGACTCAAACAACGGGAACTCCGACACCTTG
CCGGTGTTGACAAGGAGCTCGTGCACCTCCTTGGCGGTGATGATCCCCTGCGACAGCTGCCCGTT
CAACAACTTCTTCTCGGCCTCCGCCGCCAGCGACCCGGTCTCGGCCATGTAGCGGCCCACCTTGA
CGTTACGCCCGCCCAGGCAGGTGGTGATCAAGTCGGCAACACCCGCCAGCTCCTGGGTGAACGTC
TGCGCCCGCGAGTCGGGGAAGAACGTTTCCGAGAACTTGACGGTCTCGAGAAGCCCCACGCGCAT
AATGGCCGCCTTGGCGTTGTCGCCCCACCCGAGGCCCTCGACAAA
Found at i:201483 original size:44 final size:44
Alignment explanation
Indices: 201396--201483 Score: 122
Period size: 44 Copynumber: 2.0 Consensus size: 44
201386 CTCGACCCTA
* * *
201396 ATAACAATTCCACCATAACCATTCCTGTGCACCTTCTCGGCACC
1 ATAACAATTCCACCATAACCATTCATGTGCACCTACTCAGCACC
* * *
201440 ATAACTATTCCACCATAACTATTCATGTGCATCTACTCAGCACC
1 ATAACAATTCCACCATAACCATTCATGTGCACCTACTCAGCACC
201484 TACTCGGCAC
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
44 38 1.00
ACGTcount: A:0.30, C:0.35, G:0.08, T:0.27
Consensus pattern (44 bp):
ATAACAATTCCACCATAACCATTCATGTGCACCTACTCAGCACC
Left flanking sequence: Indices 200896 -- 201395
TGAAAAAGGGCAACGAGCCGCCGGCGGAGTTGGACGACAAGCGCCTCAAAAAGATGAAGGTGTAC
TCCAAGGAGTTTATGGACAAGTTCCGCAAGAAGCTCGCTGCCAAAAAGCACCGGCGGCGGGCCAC
CGACAATGGCGACGAGCCGCCGGCGAAGCGGGCCAAGCCCGATGCATGAAAATGCTTGTAATATA
CGTCAAACTAACGGCCTGTCTAGGTGCACGCGGCTACGCGGCACTATACTATTGTGCACCTACTC
GGCACTTCTATTCATGTGCACCTACTCGGTACTATGATATTCATGGGTACCCTATTCGGTACTAT
GCTATGCTATTCATGTGCACCCTACTCAACCCTGCTATCTATTCATGGGCACCCTACTCGACCCT
AATATCTATTCATGGACCCTACTCGACCCTAATATTGGACCCTACTCGATCCTAATAACTATTCA
TGTGCACCCTCGACCCTAATAACTATTCATCCCTACTCGACCCTA
Right flanking sequence: Indices 201484 -- 201983
TACTCGGCACTCGACACCTACTCGACACCTACACCCTAACTATTCATGTGTTTATGCAAATACTC
ATATCTCGTTAGCCTACTTGCGCTCGAGGAGCTCGGGCAAATGCTCAATCGACTCCGACCCAAAG
ATGATCTGGTACGTCGACTCAAACAACGGGAACTCCGACACCTTGCCGGTGTTGACAAGGAGCTC
GTGCACCTCCTTGGCGGTGATGATCCCCTGCGACAGCTGCCCGTTCAACAACTTCTTCTCGGCCT
CCGCCGCCAGCGACCCGGTCTCGGCCATGTAGCGGCCCACCTTGACGTTACGCCCGCCCAGGCAG
GTGGTGATCAAGTCGGCAACACCCGCCAGCTCCTGGGTGAACGTCTGCGCCCGCGAGTCGGGGAA
GAACGTTTCCGAGAACTTGACGGTCTCGAGAAGCCCCACGCGCATAATGGCCGCCTTGGCGTTGT
CGCCCCACCCGAGGCCCTCGACAAAGCCCACCGCAAGCGCCACAA
Found at i:203815 original size:11 final size:11
Alignment explanation
Indices: 203794--203846 Score: 79
Period size: 11 Copynumber: 4.8 Consensus size: 11
203784 CGTATTTTTC
*
203794 ACGGTGCTACA
1 ACGGAGCTACA
*
203805 ACAGAGCTACA
1 ACGGAGCTACA
*
203816 ACGGGGCTACA
1 ACGGAGCTACA
203827 ACGGAGCTACA
1 ACGGAGCTACA
203838 ACGGAGCTA
1 ACGGAGCTA
203847 AAAGAATGGT
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
11 37 1.00
ACGTcount: A:0.34, C:0.26, G:0.28, T:0.11
Consensus pattern (11 bp):
ACGGAGCTACA
Left flanking sequence: Indices 203294 -- 203793
AACCGTTGCGGCGCACCGATGGTCGCCGTTCATGCGATCTTTCCGATATCAGTTTGTCCGAGAGG
CGCCACCGCCCTCTGCCGAGGTTCAACTTTTGCCACAAACCGGTGTCGGATTTAGCCTTTTCCGT
AGCACCCATATTTTTGAGGATCTGCTCGCGGAAACGTCTCTATTTTTATCACCATCTGGTGTCGG
GGTGATTACGATCTCTCGATCTTCTCCGTCCCACTGACGTAACAGAATTTTTCAAATGCTTCCGA
ACGGCTCAGATTCCCGTGCGTATATGCAAGGAGGACGGTTAGTTACGTCACACCCGTTGGCTACT
CAGGGACCCCTTCCACCGAGACGCGGATCTGCTCGATCATATGCTTGTGATTCTGGCCACCTCCA
CGCCACAAAGAGGCGGACACAAACACGCGCGCACTTTTCGGTCGCGCACGACGTCTGCCACAAAG
TGGTACGCGCACGAAGCACATAAGGGTCGTGCTAGCGTATTTTTC
Right flanking sequence: Indices 203847 -- 204346
AAAGAATGGTATAAACACCAAAAACACCTTTTATCGCCCAATTTTTCAATCAACCTGTTTGGTAG
GCATAAACCTCCGGGTAAGCCCGCTCCACCCCCACTGCCAGTGGCCTCCACGCACCCGTGAGCTC
ACCTCGCGCACGTCGTGCTGCAAGAGCCGTGCGCGTCCCACCATTTTGACAGCCAGCGAAGTGGA
GAAAAACGACTTGTATACAATGGCAGAATACAGCTCACAAACCGTTGCCCAACTAAAGGAATTGC
TTAAGGAACGGGGGCTTGCCACCGATGGCAAGAAGGCTGACCTTGTCAAGCGGTTGGAGGACGCC
GACGGTGCGCAGCCGGGCGAGCAGCCTGCTGCACCTGCTGAGGCGGCTCCCGAGCCCGTGGCGGA
GGCTCCCGCGGCCGAGGCGCCCGCAGAGGAGGCCAACGGAGCTGAGCAGCCGGCGGAGCCCGTGG
CCGCCACCGAGGAGACTGCCCCCGCCGAGGCTGAGAAGCCCGTGG
Found at i:204255 original size:21 final size:21
Alignment explanation
Indices: 204216--204255 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
204206 CTGCTGAGGC
*
204216 GGCTCCCGAGCCCGTGGCGGA
1 GGCTCCCGAGCCCGAGGCGGA
* *
204237 GGCTCCCGCGGCCGAGGCG
1 GGCTCCCGAGCCCGAGGCG
204256 CCCGCAGAGG
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.07, C:0.40, G:0.45, T:0.07
Consensus pattern (21 bp):
GGCTCCCGAGCCCGAGGCGGA
Left flanking sequence: Indices 203716 -- 204215
ACTTTTCGGTCGCGCACGACGTCTGCCACAAAGTGGTACGCGCACGAAGCACATAAGGGTCGTGC
TAGCGTATTTTTCACGGTGCTACAACAGAGCTACAACGGGGCTACAACGGAGCTACAACGGAGCT
AAAAGAATGGTATAAACACCAAAAACACCTTTTATCGCCCAATTTTTCAATCAACCTGTTTGGTA
GGCATAAACCTCCGGGTAAGCCCGCTCCACCCCCACTGCCAGTGGCCTCCACGCACCCGTGAGCT
CACCTCGCGCACGTCGTGCTGCAAGAGCCGTGCGCGTCCCACCATTTTGACAGCCAGCGAAGTGG
AGAAAAACGACTTGTATACAATGGCAGAATACAGCTCACAAACCGTTGCCCAACTAAAGGAATTG
CTTAAGGAACGGGGGCTTGCCACCGATGGCAAGAAGGCTGACCTTGTCAAGCGGTTGGAGGACGC
CGACGGTGCGCAGCCGGGCGAGCAGCCTGCTGCACCTGCTGAGGC
Right flanking sequence: Indices 204256 -- 204755
CCCGCAGAGGAGGCCAACGGAGCTGAGCAGCCGGCGGAGCCCGTGGCCGCCACCGAGGAGACTGC
CCCCGCCGAGGCTGAGAAGCCCGTGGAAGAGAAGCCCGCCCCGAAGGTGTTGTCGCCCGAGGAGC
GCAAGCTGTTGGCGGTGGACTTGTTGAAGAAAAAGATTGCCCGTGCCCAGAAGTTCGGCAACGAG
GAGGGTGCCGAGGCTGCCCGCAAGGACCTCGCGCGGGTGGAGAAGTTTGGCGTGGACCCGGGCAC
CGCGTTGGCGGAGGAGATTGGCCTCGTGGACAAACAGTTGGGGAGCGAGTTGCGTGCCGGGCGTG
ACCGCAAGCACAAGGGAAAACGCGGGTTCAAGGGTAAATAAATCATTGTATTACTAGACAGTACG
AAGTCACAAAGAATAGCACGAGTCACCACGAATAGTACGAGTGGTAGCACAAGTTACCACGAAAA
GTTGTAGCGAAGTCACCACGAGGTTGTAGCACGAGTCACCACGGG
Found at i:204671 original size:19 final size:19
Alignment explanation
Indices: 204647--204687 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
204637 GACAGTACGA
204647 AGTCACAAAGAATAGCACG
1 AGTCACAAAGAATAGCACG
* * *
204666 AGTCACCACGAATAGTACG
1 AGTCACAAAGAATAGCACG
204685 AGT
1 AGT
204688 GGTAGCACAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.41, C:0.22, G:0.22, T:0.15
Consensus pattern (19 bp):
AGTCACAAAGAATAGCACG
Left flanking sequence: Indices 204147 -- 204646
CCTTGTCAAGCGGTTGGAGGACGCCGACGGTGCGCAGCCGGGCGAGCAGCCTGCTGCACCTGCTG
AGGCGGCTCCCGAGCCCGTGGCGGAGGCTCCCGCGGCCGAGGCGCCCGCAGAGGAGGCCAACGGA
GCTGAGCAGCCGGCGGAGCCCGTGGCCGCCACCGAGGAGACTGCCCCCGCCGAGGCTGAGAAGCC
CGTGGAAGAGAAGCCCGCCCCGAAGGTGTTGTCGCCCGAGGAGCGCAAGCTGTTGGCGGTGGACT
TGTTGAAGAAAAAGATTGCCCGTGCCCAGAAGTTCGGCAACGAGGAGGGTGCCGAGGCTGCCCGC
AAGGACCTCGCGCGGGTGGAGAAGTTTGGCGTGGACCCGGGCACCGCGTTGGCGGAGGAGATTGG
CCTCGTGGACAAACAGTTGGGGAGCGAGTTGCGTGCCGGGCGTGACCGCAAGCACAAGGGAAAAC
GCGGGTTCAAGGGTAAATAAATCATTGTATTACTAGACAGTACGA
Right flanking sequence: Indices 204688 -- 205187
GGTAGCACAAGTTACCACGAAAAGTTGTAGCGAAGTCACCACGAGGTTGTAGCACGAGTCACCAC
GGGTAGATAGCACGAATCACCATGGATAGTCATAGCACGAGCCACCTTGGATAGCTCGAGTTACC
ACGAATAGTTGTAGCACTCGTCGAAAAACGCGGTTTCCAACTCCACCGCCTTGGTGAACGCCTGT
TCACACTCGGACGGGTTGCCAGGGGCCACCCGGTCCACCTCGGCCTCCAAAAACGCCACCCAGCC
CTCGAAGTCGGCGCCGGCGTGGAGATCGATCCACATCTGGTGCTTGTAGGCCAAAGTGCGACTGG
TGGCCGCCTTGTTGTAGAGGGGCCATTCCACGTACACCTTCTCCATCACCCACAAGAACGTCACG
AGCTCGAGGTAGGACTCGCAGTCAAACGTCAAGTAGCGGAGGTACTCGAGGTACTCCTTTACCTT
AGGCAACACCAACTGCGACGGCCCCTTGGTGCCCGCGGCCTCCAA
Found at i:204739 original size:22 final size:22
Alignment explanation
Indices: 204711--204753 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 22
204701 ACCACGAAAA
204711 GTTGTAGCGA-AGTCACCACGAG
1 GTTGTAGC-ACAGTCACCACGAG
204733 GTTGTAGCACGAGTCACCACG
1 GTTGTAGCAC-AGTCACCACG
204754 GGTAGATAGC
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 1 0.05
22 8 0.42
23 10 0.53
ACGTcount: A:0.26, C:0.26, G:0.30, T:0.19
Consensus pattern (22 bp):
GTTGTAGCACAGTCACCACGAG
Left flanking sequence: Indices 204211 -- 204710
GAGGCGGCTCCCGAGCCCGTGGCGGAGGCTCCCGCGGCCGAGGCGCCCGCAGAGGAGGCCAACGG
AGCTGAGCAGCCGGCGGAGCCCGTGGCCGCCACCGAGGAGACTGCCCCCGCCGAGGCTGAGAAGC
CCGTGGAAGAGAAGCCCGCCCCGAAGGTGTTGTCGCCCGAGGAGCGCAAGCTGTTGGCGGTGGAC
TTGTTGAAGAAAAAGATTGCCCGTGCCCAGAAGTTCGGCAACGAGGAGGGTGCCGAGGCTGCCCG
CAAGGACCTCGCGCGGGTGGAGAAGTTTGGCGTGGACCCGGGCACCGCGTTGGCGGAGGAGATTG
GCCTCGTGGACAAACAGTTGGGGAGCGAGTTGCGTGCCGGGCGTGACCGCAAGCACAAGGGAAAA
CGCGGGTTCAAGGGTAAATAAATCATTGTATTACTAGACAGTACGAAGTCACAAAGAATAGCACG
AGTCACCACGAATAGTACGAGTGGTAGCACAAGTTACCACGAAAA
Right flanking sequence: Indices 204754 -- 205253
GGTAGATAGCACGAATCACCATGGATAGTCATAGCACGAGCCACCTTGGATAGCTCGAGTTACCA
CGAATAGTTGTAGCACTCGTCGAAAAACGCGGTTTCCAACTCCACCGCCTTGGTGAACGCCTGTT
CACACTCGGACGGGTTGCCAGGGGCCACCCGGTCCACCTCGGCCTCCAAAAACGCCACCCAGCCC
TCGAAGTCGGCGCCGGCGTGGAGATCGATCCACATCTGGTGCTTGTAGGCCAAAGTGCGACTGGT
GGCCGCCTTGTTGTAGAGGGGCCATTCCACGTACACCTTCTCCATCACCCACAAGAACGTCACGA
GCTCGAGGTAGGACTCGCAGTCAAACGTCAAGTAGCGGAGGTACTCGAGGTACTCCTTTACCTTA
GGCAACACCAACTGCGACGGCCCCTTGGTGCCCGCGGCCTCCAACTCGCCAAGCACCCGGTGGAA
GTAGTCGTTCTCGTCGTGCAGCACAAACCCGATCTGCTTGCCCAA
Found at i:204751 original size:23 final size:23
Alignment explanation
Indices: 204721--204798 Score: 77
Period size: 23 Copynumber: 3.3 Consensus size: 23
204711 GTTGTAGCGA
*
204721 AGTCACCACGAGGTTG-TAGCACG
1 AGTCACCACG-GGTAGATAGCACG
204744 AGTCACCACGGGTAGATAGCACG
1 AGTCACCACGGGTAGATAGCACG
* * *
204767 AATCACCATGGATAGTCATAGCACG
1 AGTCACCACGGGTAG--ATAGCACG
*
204792 AGCCACC
1 AGTCACC
204799 TTGGATAGCT
Statistics
Matches: 46, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
22 4 0.09
23 29 0.63
25 13 0.28
ACGTcount: A:0.31, C:0.28, G:0.26, T:0.15
Consensus pattern (23 bp):
AGTCACCACGGGTAGATAGCACG
Left flanking sequence: Indices 204221 -- 204720
CCGAGCCCGTGGCGGAGGCTCCCGCGGCCGAGGCGCCCGCAGAGGAGGCCAACGGAGCTGAGCAG
CCGGCGGAGCCCGTGGCCGCCACCGAGGAGACTGCCCCCGCCGAGGCTGAGAAGCCCGTGGAAGA
GAAGCCCGCCCCGAAGGTGTTGTCGCCCGAGGAGCGCAAGCTGTTGGCGGTGGACTTGTTGAAGA
AAAAGATTGCCCGTGCCCAGAAGTTCGGCAACGAGGAGGGTGCCGAGGCTGCCCGCAAGGACCTC
GCGCGGGTGGAGAAGTTTGGCGTGGACCCGGGCACCGCGTTGGCGGAGGAGATTGGCCTCGTGGA
CAAACAGTTGGGGAGCGAGTTGCGTGCCGGGCGTGACCGCAAGCACAAGGGAAAACGCGGGTTCA
AGGGTAAATAAATCATTGTATTACTAGACAGTACGAAGTCACAAAGAATAGCACGAGTCACCACG
AATAGTACGAGTGGTAGCACAAGTTACCACGAAAAGTTGTAGCGA
Right flanking sequence: Indices 204799 -- 205298
TTGGATAGCTCGAGTTACCACGAATAGTTGTAGCACTCGTCGAAAAACGCGGTTTCCAACTCCAC
CGCCTTGGTGAACGCCTGTTCACACTCGGACGGGTTGCCAGGGGCCACCCGGTCCACCTCGGCCT
CCAAAAACGCCACCCAGCCCTCGAAGTCGGCGCCGGCGTGGAGATCGATCCACATCTGGTGCTTG
TAGGCCAAAGTGCGACTGGTGGCCGCCTTGTTGTAGAGGGGCCATTCCACGTACACCTTCTCCAT
CACCCACAAGAACGTCACGAGCTCGAGGTAGGACTCGCAGTCAAACGTCAAGTAGCGGAGGTACT
CGAGGTACTCCTTTACCTTAGGCAACACCAACTGCGACGGCCCCTTGGTGCCCGCGGCCTCCAAC
TCGCCAAGCACCCGGTGGAAGTAGTCGTTCTCGTCGTGCAGCACAAACCCGATCTGCTTGCCCAA
GCGGATGGCCGACCCGGCGTCGTCGCAGAGCGCGAGGGCCTTGCC
Found at i:204790 original size:25 final size:23
Alignment explanation
Indices: 204737--204806 Score: 77
Period size: 25 Copynumber: 3.0 Consensus size: 23
204727 CACGAGGTTG
* *
204737 TAGCACGAGTCACCACGGGTAGA
1 TAGCACGAGTCACCATGGATAGA
*
204760 TAGCACGAATCACCATGGATAGTCA
1 TAGCACGAGTCACCATGGATAG--A
* *
204785 TAGCACGAGCCACCTTGGATAG
1 TAGCACGAGTCACCATGGATAG
204807 CTCGAGTTAC
Statistics
Matches: 39, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
23 19 0.49
25 20 0.51
ACGTcount: A:0.31, C:0.26, G:0.26, T:0.17
Consensus pattern (23 bp):
TAGCACGAGTCACCATGGATAGA
Left flanking sequence: Indices 204237 -- 204736
GGCTCCCGCGGCCGAGGCGCCCGCAGAGGAGGCCAACGGAGCTGAGCAGCCGGCGGAGCCCGTGG
CCGCCACCGAGGAGACTGCCCCCGCCGAGGCTGAGAAGCCCGTGGAAGAGAAGCCCGCCCCGAAG
GTGTTGTCGCCCGAGGAGCGCAAGCTGTTGGCGGTGGACTTGTTGAAGAAAAAGATTGCCCGTGC
CCAGAAGTTCGGCAACGAGGAGGGTGCCGAGGCTGCCCGCAAGGACCTCGCGCGGGTGGAGAAGT
TTGGCGTGGACCCGGGCACCGCGTTGGCGGAGGAGATTGGCCTCGTGGACAAACAGTTGGGGAGC
GAGTTGCGTGCCGGGCGTGACCGCAAGCACAAGGGAAAACGCGGGTTCAAGGGTAAATAAATCAT
TGTATTACTAGACAGTACGAAGTCACAAAGAATAGCACGAGTCACCACGAATAGTACGAGTGGTA
GCACAAGTTACCACGAAAAGTTGTAGCGAAGTCACCACGAGGTTG
Right flanking sequence: Indices 204807 -- 205306
CTCGAGTTACCACGAATAGTTGTAGCACTCGTCGAAAAACGCGGTTTCCAACTCCACCGCCTTGG
TGAACGCCTGTTCACACTCGGACGGGTTGCCAGGGGCCACCCGGTCCACCTCGGCCTCCAAAAAC
GCCACCCAGCCCTCGAAGTCGGCGCCGGCGTGGAGATCGATCCACATCTGGTGCTTGTAGGCCAA
AGTGCGACTGGTGGCCGCCTTGTTGTAGAGGGGCCATTCCACGTACACCTTCTCCATCACCCACA
AGAACGTCACGAGCTCGAGGTAGGACTCGCAGTCAAACGTCAAGTAGCGGAGGTACTCGAGGTAC
TCCTTTACCTTAGGCAACACCAACTGCGACGGCCCCTTGGTGCCCGCGGCCTCCAACTCGCCAAG
CACCCGGTGGAAGTAGTCGTTCTCGTCGTGCAGCACAAACCCGATCTGCTTGCCCAAGCGGATGG
CCGACCCGGCGTCGTCGCAGAGCGCGAGGGCCTTGCCCATCACGT
Found at i:221674 original size:18 final size:19
Alignment explanation
Indices: 221648--221771 Score: 80
Period size: 18 Copynumber: 6.6 Consensus size: 19
221638 TTCGTAGACT
*
221648 ATCACTAGCTATTGAAGGT
1 ATCACTAGCTATTGAAGGA
221667 AT-ACTAGCTA-TGAAGGA
1 ATCACTAGCTATTGAAGGA
* **
221684 ATCACCAGCTATTCAGTTCTGGA
1 ATCACTAGCTATT--G--AAGGA
*
221707 ATCACTAGCTA-TGAAGGC
1 ATCACTAGCTATTGAAGGA
* *
221725 A-CACTAGCTAATTGTAGGC
1 ATCACTAGCT-ATTGAAGGA
* *
221744 A-CACTAGTTATTGAAGGC
1 ATCACTAGCTATTGAAGGA
221762 A-CACTAGCTA
1 ATCACTAGCTA
221772 ATCGTAGGTA
Statistics
Matches: 85, Mismatches: 12, Indels: 17
0.75 0.11 0.15
Matches are distributed among these distances:
17 16 0.19
18 36 0.42
19 17 0.20
20 1 0.01
21 1 0.01
22 1 0.01
23 13 0.15
ACGTcount: A:0.33, C:0.20, G:0.20, T:0.27
Consensus pattern (19 bp):
ATCACTAGCTATTGAAGGA
Left flanking sequence: Indices 221148 -- 221647
GCGGGCCCGGGTGCGAGGCGACCGGTCGGGCTTGAAGCGGAACGCGGCCACCAGCGGCAGGCCGG
CGCCTCTGGCGGGCGGCGGGGTGGAGTGGTCGCGCAGCGGGTCCGCGGCCGGGGTGCCCGAGCGT
GGCAGCACCAGGCCGGTGTCCAGCCGGAGCAACGAGCTCAAGTTGGACTTTGGGGCGGATGTCGG
CGGGTTTGTGTGGGGGCGGTCGGCGGCGGCGTCCAGCGTCAGCACCTGGGGCGATGCTTTTAACA
GGAGGTCCATCGCGGCAATTGGCTATCCGCTACTGGCGCTCGAGCTTCCTGGCAGCACGAAGTAG
GCAGTACGAAGTGGACGGTGGCCCCACGGCGTGCCGCTACCGAGATTTCCTCGGTCACTCATGCA
GGCGCGGAGCGGCTACGCCAAGGGGCCGTTAGGTGCGGGGAGGTGGAGGCGCACTAGCTAGAAGG
AACACTATAAGGCCTAGCTATGCGCAAGCACACTATTCGTAGACT
Right flanking sequence: Indices 221772 -- 222271
ATCGTAGGTAATCATTAGCTAATCAGCTCATCAACCAATAGCTATTGAAGGCATACTAGCTATTC
AGTCCATTACTAGCTATTCTGTTCAATGACTAGCTATTCTGTTCAATGGCAATGATGTTAGCGTA
TGTACTAGCTATTCAGTTAATTCGAAGGAATCACTAGATATTCGAAGGAATCACTAGCTATTCAT
GGCACACTAGCTATTCATGGCATTCGCTAGCTGTTCAGTTCATTTACCAGCTGTTCATTTCATCA
ACCACTAACTATTCTGTTCTTCAATCACTAGCTATTCAGTTATGGAATCAGTAGAACCCTCTCGC
CCGCTTTTGCCATCATTTCCACCCCAGCAAAAAGCGTTGGGGGGTCTGGGGGGCGCCGCTTGCGG
CCCCCCAGCCCAGTATACCCCTATATTCTCTGGTGGTTTGGTATGATGCTGGTAGTCAACGCTTA
ATTTATTCAGTCAATCACTAGCTATTTAATTATGGCAATGATTAG
Found at i:221745 original size:19 final size:19
Alignment explanation
Indices: 221709--221773 Score: 91
Period size: 18 Copynumber: 3.6 Consensus size: 19
221699 GTTCTGGAAT
221709 CACTAGCT-A-TGAAGGCA
1 CACTAGCTAATTGAAGGCA
*
221726 CACTAGCTAATTGTAGGCA
1 CACTAGCTAATTGAAGGCA
*
221745 CACTAG-TTATTGAAGGCA
1 CACTAGCTAATTGAAGGCA
221763 CACTAGCTAAT
1 CACTAGCTAAT
221774 CGTAGGTAAT
Statistics
Matches: 41, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
17 8 0.20
18 17 0.41
19 16 0.39
ACGTcount: A:0.34, C:0.22, G:0.20, T:0.25
Consensus pattern (19 bp):
CACTAGCTAATTGAAGGCA
Left flanking sequence: Indices 221209 -- 221708
CCGGCGCCTCTGGCGGGCGGCGGGGTGGAGTGGTCGCGCAGCGGGTCCGCGGCCGGGGTGCCCGA
GCGTGGCAGCACCAGGCCGGTGTCCAGCCGGAGCAACGAGCTCAAGTTGGACTTTGGGGCGGATG
TCGGCGGGTTTGTGTGGGGGCGGTCGGCGGCGGCGTCCAGCGTCAGCACCTGGGGCGATGCTTTT
AACAGGAGGTCCATCGCGGCAATTGGCTATCCGCTACTGGCGCTCGAGCTTCCTGGCAGCACGAA
GTAGGCAGTACGAAGTGGACGGTGGCCCCACGGCGTGCCGCTACCGAGATTTCCTCGGTCACTCA
TGCAGGCGCGGAGCGGCTACGCCAAGGGGCCGTTAGGTGCGGGGAGGTGGAGGCGCACTAGCTAG
AAGGAACACTATAAGGCCTAGCTATGCGCAAGCACACTATTCGTAGACTATCACTAGCTATTGAA
GGTATACTAGCTATGAAGGAATCACCAGCTATTCAGTTCTGGAAT
Right flanking sequence: Indices 221774 -- 222273
CGTAGGTAATCATTAGCTAATCAGCTCATCAACCAATAGCTATTGAAGGCATACTAGCTATTCAG
TCCATTACTAGCTATTCTGTTCAATGACTAGCTATTCTGTTCAATGGCAATGATGTTAGCGTATG
TACTAGCTATTCAGTTAATTCGAAGGAATCACTAGATATTCGAAGGAATCACTAGCTATTCATGG
CACACTAGCTATTCATGGCATTCGCTAGCTGTTCAGTTCATTTACCAGCTGTTCATTTCATCAAC
CACTAACTATTCTGTTCTTCAATCACTAGCTATTCAGTTATGGAATCAGTAGAACCCTCTCGCCC
GCTTTTGCCATCATTTCCACCCCAGCAAAAAGCGTTGGGGGGTCTGGGGGGCGCCGCTTGCGGCC
CCCCAGCCCAGTATACCCCTATATTCTCTGGTGGTTTGGTATGATGCTGGTAGTCAACGCTTAAT
TTATTCAGTCAATCACTAGCTATTTAATTATGGCAATGATTAGAT
Found at i:221764 original size:37 final size:36
Alignment explanation
Indices: 221709--221779 Score: 115
Period size: 37 Copynumber: 1.9 Consensus size: 36
221699 GTTCTGGAAT
*
221709 CACTAGCTATGAAGGCACACTAGCTAATTGTAGGCA
1 CACTAGCTATGAAGGCACACTAGCTAATCGTAGGCA
*
221745 CACTAGTTATTGAAGGCACACTAGCTAATCGTAGG
1 CACTAGCTA-TGAAGGCACACTAGCTAATCGTAGG
221780 TAATCATTAG
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
36 8 0.25
37 24 0.75
ACGTcount: A:0.32, C:0.21, G:0.23, T:0.24
Consensus pattern (36 bp):
CACTAGCTATGAAGGCACACTAGCTAATCGTAGGCA
Left flanking sequence: Indices 221209 -- 221708
CCGGCGCCTCTGGCGGGCGGCGGGGTGGAGTGGTCGCGCAGCGGGTCCGCGGCCGGGGTGCCCGA
GCGTGGCAGCACCAGGCCGGTGTCCAGCCGGAGCAACGAGCTCAAGTTGGACTTTGGGGCGGATG
TCGGCGGGTTTGTGTGGGGGCGGTCGGCGGCGGCGTCCAGCGTCAGCACCTGGGGCGATGCTTTT
AACAGGAGGTCCATCGCGGCAATTGGCTATCCGCTACTGGCGCTCGAGCTTCCTGGCAGCACGAA
GTAGGCAGTACGAAGTGGACGGTGGCCCCACGGCGTGCCGCTACCGAGATTTCCTCGGTCACTCA
TGCAGGCGCGGAGCGGCTACGCCAAGGGGCCGTTAGGTGCGGGGAGGTGGAGGCGCACTAGCTAG
AAGGAACACTATAAGGCCTAGCTATGCGCAAGCACACTATTCGTAGACTATCACTAGCTATTGAA
GGTATACTAGCTATGAAGGAATCACCAGCTATTCAGTTCTGGAAT
Right flanking sequence: Indices 221780 -- 222279
TAATCATTAGCTAATCAGCTCATCAACCAATAGCTATTGAAGGCATACTAGCTATTCAGTCCATT
ACTAGCTATTCTGTTCAATGACTAGCTATTCTGTTCAATGGCAATGATGTTAGCGTATGTACTAG
CTATTCAGTTAATTCGAAGGAATCACTAGATATTCGAAGGAATCACTAGCTATTCATGGCACACT
AGCTATTCATGGCATTCGCTAGCTGTTCAGTTCATTTACCAGCTGTTCATTTCATCAACCACTAA
CTATTCTGTTCTTCAATCACTAGCTATTCAGTTATGGAATCAGTAGAACCCTCTCGCCCGCTTTT
GCCATCATTTCCACCCCAGCAAAAAGCGTTGGGGGGTCTGGGGGGCGCCGCTTGCGGCCCCCCAG
CCCAGTATACCCCTATATTCTCTGGTGGTTTGGTATGATGCTGGTAGTCAACGCTTAATTTATTC
AGTCAATCACTAGCTATTTAATTATGGCAATGATTAGATACAGAA
Found at i:221870 original size:20 final size:20
Alignment explanation
Indices: 221826--221884 Score: 84
Period size: 20 Copynumber: 3.0 Consensus size: 20
221816 TTGAAGGCAT
* * *
221826 ACTAGCTATTCAG-TCCATT
1 ACTAGCTATTCTGTTCAATG
221845 ACTAGCTATTCTGTTCAATG
1 ACTAGCTATTCTGTTCAATG
221865 ACTAGCTATTCTGTTCAATG
1 ACTAGCTATTCTGTTCAATG
221885 GCAATGATGT
Statistics
Matches: 36, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
19 12 0.33
20 24 0.67
ACGTcount: A:0.25, C:0.22, G:0.14, T:0.39
Consensus pattern (20 bp):
ACTAGCTATTCTGTTCAATG
Left flanking sequence: Indices 221326 -- 221825
TTTGGGGCGGATGTCGGCGGGTTTGTGTGGGGGCGGTCGGCGGCGGCGTCCAGCGTCAGCACCTG
GGGCGATGCTTTTAACAGGAGGTCCATCGCGGCAATTGGCTATCCGCTACTGGCGCTCGAGCTTC
CTGGCAGCACGAAGTAGGCAGTACGAAGTGGACGGTGGCCCCACGGCGTGCCGCTACCGAGATTT
CCTCGGTCACTCATGCAGGCGCGGAGCGGCTACGCCAAGGGGCCGTTAGGTGCGGGGAGGTGGAG
GCGCACTAGCTAGAAGGAACACTATAAGGCCTAGCTATGCGCAAGCACACTATTCGTAGACTATC
ACTAGCTATTGAAGGTATACTAGCTATGAAGGAATCACCAGCTATTCAGTTCTGGAATCACTAGC
TATGAAGGCACACTAGCTAATTGTAGGCACACTAGTTATTGAAGGCACACTAGCTAATCGTAGGT
AATCATTAGCTAATCAGCTCATCAACCAATAGCTATTGAAGGCAT
Right flanking sequence: Indices 221885 -- 222384
GCAATGATGTTAGCGTATGTACTAGCTATTCAGTTAATTCGAAGGAATCACTAGATATTCGAAGG
AATCACTAGCTATTCATGGCACACTAGCTATTCATGGCATTCGCTAGCTGTTCAGTTCATTTACC
AGCTGTTCATTTCATCAACCACTAACTATTCTGTTCTTCAATCACTAGCTATTCAGTTATGGAAT
CAGTAGAACCCTCTCGCCCGCTTTTGCCATCATTTCCACCCCAGCAAAAAGCGTTGGGGGGTCTG
GGGGGCGCCGCTTGCGGCCCCCCAGCCCAGTATACCCCTATATTCTCTGGTGGTTTGGTATGATG
CTGGTAGTCAACGCTTAATTTATTCAGTCAATCACTAGCTATTTAATTATGGCAATGATTAGATA
CAGAAGGCACACTGGTTATCCGAAGGCACACTAGCTATTCGCACACTATCTGTCATTACTAGCTA
TTCAATTATGGTAACCTGGCTATTCGATTATGGCAAACTAGCTAC
Found at i:221946 original size:20 final size:20
Alignment explanation
Indices: 221921--221964 Score: 79
Period size: 20 Copynumber: 2.2 Consensus size: 20
221911 TATTCAGTTA
221921 ATTCGAAGGAATCACTAGAT
1 ATTCGAAGGAATCACTAGAT
*
221941 ATTCGAAGGAATCACTAGCT
1 ATTCGAAGGAATCACTAGAT
221961 ATTC
1 ATTC
221965 ATGGCACACT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.36, C:0.18, G:0.18, T:0.27
Consensus pattern (20 bp):
ATTCGAAGGAATCACTAGAT
Left flanking sequence: Indices 221421 -- 221920
GGCAATTGGCTATCCGCTACTGGCGCTCGAGCTTCCTGGCAGCACGAAGTAGGCAGTACGAAGTG
GACGGTGGCCCCACGGCGTGCCGCTACCGAGATTTCCTCGGTCACTCATGCAGGCGCGGAGCGGC
TACGCCAAGGGGCCGTTAGGTGCGGGGAGGTGGAGGCGCACTAGCTAGAAGGAACACTATAAGGC
CTAGCTATGCGCAAGCACACTATTCGTAGACTATCACTAGCTATTGAAGGTATACTAGCTATGAA
GGAATCACCAGCTATTCAGTTCTGGAATCACTAGCTATGAAGGCACACTAGCTAATTGTAGGCAC
ACTAGTTATTGAAGGCACACTAGCTAATCGTAGGTAATCATTAGCTAATCAGCTCATCAACCAAT
AGCTATTGAAGGCATACTAGCTATTCAGTCCATTACTAGCTATTCTGTTCAATGACTAGCTATTC
TGTTCAATGGCAATGATGTTAGCGTATGTACTAGCTATTCAGTTA
Right flanking sequence: Indices 221965 -- 222464
ATGGCACACTAGCTATTCATGGCATTCGCTAGCTGTTCAGTTCATTTACCAGCTGTTCATTTCAT
CAACCACTAACTATTCTGTTCTTCAATCACTAGCTATTCAGTTATGGAATCAGTAGAACCCTCTC
GCCCGCTTTTGCCATCATTTCCACCCCAGCAAAAAGCGTTGGGGGGTCTGGGGGGCGCCGCTTGC
GGCCCCCCAGCCCAGTATACCCCTATATTCTCTGGTGGTTTGGTATGATGCTGGTAGTCAACGCT
TAATTTATTCAGTCAATCACTAGCTATTTAATTATGGCAATGATTAGATACAGAAGGCACACTGG
TTATCCGAAGGCACACTAGCTATTCGCACACTATCTGTCATTACTAGCTATTCAATTATGGTAAC
CTGGCTATTCGATTATGGCAAACTAGCTACTCTGTTTCGATGGCAATCACTACTCTGTTTCAATC
ACTAAAGTTAGCGTATGTACTAGCTATTCAGTTATGGAATCACTA
Found at i:222003 original size:20 final size:18
Alignment explanation
Indices: 221953--221988 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
221943 TCGAAGGAAT
221953 CACTAGCTATTCATGGCA
1 CACTAGCTATTCATGGCA
221971 CACTAGCTATTCATGGCA
1 CACTAGCTATTCATGGCA
221989 TTCGCTAGCT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.28
Consensus pattern (18 bp):
CACTAGCTATTCATGGCA
Left flanking sequence: Indices 221453 -- 221952
TTCCTGGCAGCACGAAGTAGGCAGTACGAAGTGGACGGTGGCCCCACGGCGTGCCGCTACCGAGA
TTTCCTCGGTCACTCATGCAGGCGCGGAGCGGCTACGCCAAGGGGCCGTTAGGTGCGGGGAGGTG
GAGGCGCACTAGCTAGAAGGAACACTATAAGGCCTAGCTATGCGCAAGCACACTATTCGTAGACT
ATCACTAGCTATTGAAGGTATACTAGCTATGAAGGAATCACCAGCTATTCAGTTCTGGAATCACT
AGCTATGAAGGCACACTAGCTAATTGTAGGCACACTAGTTATTGAAGGCACACTAGCTAATCGTA
GGTAATCATTAGCTAATCAGCTCATCAACCAATAGCTATTGAAGGCATACTAGCTATTCAGTCCA
TTACTAGCTATTCTGTTCAATGACTAGCTATTCTGTTCAATGGCAATGATGTTAGCGTATGTACT
AGCTATTCAGTTAATTCGAAGGAATCACTAGATATTCGAAGGAAT
Right flanking sequence: Indices 221989 -- 222488
TTCGCTAGCTGTTCAGTTCATTTACCAGCTGTTCATTTCATCAACCACTAACTATTCTGTTCTTC
AATCACTAGCTATTCAGTTATGGAATCAGTAGAACCCTCTCGCCCGCTTTTGCCATCATTTCCAC
CCCAGCAAAAAGCGTTGGGGGGTCTGGGGGGCGCCGCTTGCGGCCCCCCAGCCCAGTATACCCCT
ATATTCTCTGGTGGTTTGGTATGATGCTGGTAGTCAACGCTTAATTTATTCAGTCAATCACTAGC
TATTTAATTATGGCAATGATTAGATACAGAAGGCACACTGGTTATCCGAAGGCACACTAGCTATT
CGCACACTATCTGTCATTACTAGCTATTCAATTATGGTAACCTGGCTATTCGATTATGGCAAACT
AGCTACTCTGTTTCGATGGCAATCACTACTCTGTTTCAATCACTAAAGTTAGCGTATGTACTAGC
TATTCAGTTATGGAATCACTAGTTATTTGAAGGTACACTAGCTAT
Found at i:222035 original size:20 final size:20
Alignment explanation
Indices: 221995--222035 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
221985 GGCATTCGCT
**
221995 AGCTGTTCAGTTCATTTACC
1 AGCTGTTCAGTTCATCAACC
*
222015 AGCTGTTCATTTCATCAACC
1 AGCTGTTCAGTTCATCAACC
222035 A
1 A
222036 CTAACTATTC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.24, C:0.27, G:0.12, T:0.37
Consensus pattern (20 bp):
AGCTGTTCAGTTCATCAACC
Left flanking sequence: Indices 221495 -- 221994
CCCACGGCGTGCCGCTACCGAGATTTCCTCGGTCACTCATGCAGGCGCGGAGCGGCTACGCCAAG
GGGCCGTTAGGTGCGGGGAGGTGGAGGCGCACTAGCTAGAAGGAACACTATAAGGCCTAGCTATG
CGCAAGCACACTATTCGTAGACTATCACTAGCTATTGAAGGTATACTAGCTATGAAGGAATCACC
AGCTATTCAGTTCTGGAATCACTAGCTATGAAGGCACACTAGCTAATTGTAGGCACACTAGTTAT
TGAAGGCACACTAGCTAATCGTAGGTAATCATTAGCTAATCAGCTCATCAACCAATAGCTATTGA
AGGCATACTAGCTATTCAGTCCATTACTAGCTATTCTGTTCAATGACTAGCTATTCTGTTCAATG
GCAATGATGTTAGCGTATGTACTAGCTATTCAGTTAATTCGAAGGAATCACTAGATATTCGAAGG
AATCACTAGCTATTCATGGCACACTAGCTATTCATGGCATTCGCT
Right flanking sequence: Indices 222036 -- 222535
CTAACTATTCTGTTCTTCAATCACTAGCTATTCAGTTATGGAATCAGTAGAACCCTCTCGCCCGC
TTTTGCCATCATTTCCACCCCAGCAAAAAGCGTTGGGGGGTCTGGGGGGCGCCGCTTGCGGCCCC
CCAGCCCAGTATACCCCTATATTCTCTGGTGGTTTGGTATGATGCTGGTAGTCAACGCTTAATTT
ATTCAGTCAATCACTAGCTATTTAATTATGGCAATGATTAGATACAGAAGGCACACTGGTTATCC
GAAGGCACACTAGCTATTCGCACACTATCTGTCATTACTAGCTATTCAATTATGGTAACCTGGCT
ATTCGATTATGGCAAACTAGCTACTCTGTTTCGATGGCAATCACTACTCTGTTTCAATCACTAAA
GTTAGCGTATGTACTAGCTATTCAGTTATGGAATCACTAGTTATTTGAAGGTACACTAGCTATTC
AAACACACTAGCTATTCATTACGGATCACTCGGTCTCAATGGCAA
Found at i:222383 original size:22 final size:22
Alignment explanation
Indices: 222332--222383 Score: 68
Period size: 22 Copynumber: 2.4 Consensus size: 22
222322 ATCTGTCATT
*
222332 ACTAGCTATTCAATTATGGTAA
1 ACTAGCTATTCAATTATGGCAA
* * *
222354 CCTGGCTATTCGATTATGGCAA
1 ACTAGCTATTCAATTATGGCAA
222376 ACTAGCTA
1 ACTAGCTA
222384 CTCTGTTTCG
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.31, C:0.19, G:0.17, T:0.33
Consensus pattern (22 bp):
ACTAGCTATTCAATTATGGCAA
Left flanking sequence: Indices 221832 -- 222331
TATTCAGTCCATTACTAGCTATTCTGTTCAATGACTAGCTATTCTGTTCAATGGCAATGATGTTA
GCGTATGTACTAGCTATTCAGTTAATTCGAAGGAATCACTAGATATTCGAAGGAATCACTAGCTA
TTCATGGCACACTAGCTATTCATGGCATTCGCTAGCTGTTCAGTTCATTTACCAGCTGTTCATTT
CATCAACCACTAACTATTCTGTTCTTCAATCACTAGCTATTCAGTTATGGAATCAGTAGAACCCT
CTCGCCCGCTTTTGCCATCATTTCCACCCCAGCAAAAAGCGTTGGGGGGTCTGGGGGGCGCCGCT
TGCGGCCCCCCAGCCCAGTATACCCCTATATTCTCTGGTGGTTTGGTATGATGCTGGTAGTCAAC
GCTTAATTTATTCAGTCAATCACTAGCTATTTAATTATGGCAATGATTAGATACAGAAGGCACAC
TGGTTATCCGAAGGCACACTAGCTATTCGCACACTATCTGTCATT
Right flanking sequence: Indices 222384 -- 222883
CTCTGTTTCGATGGCAATCACTACTCTGTTTCAATCACTAAAGTTAGCGTATGTACTAGCTATTC
AGTTATGGAATCACTAGTTATTTGAAGGTACACTAGCTATTCAAACACACTAGCTATTCATTACG
GATCACTCGGTCTCAATGGCAATCACCAACTTGCCGTGGGCCTTGCCCGCGGTCAACCGCGCAAA
CGCCTCGCCAAACGCCGGGAACTCGTAGATCTGGTCAATGTCCACCTTGAGCTTGCCGGCCTTCA
TCTGCGCCAACGCCGCGGCCACACTGGCGGCGGACGGCTCCCCCAACACCACGTGGTACCCGCGG
CTCGCCAACCCCATCCACAGCGCCGCCGCCCGCATCACCGGCCACGCCATCGCGGGGATCATCGA
CCGGATCAGGTCGCGTGCGGTGTCGACCTTGCGGCACCCCAGCAACGCGTAGTAGCCGCCCGTGG
GCGCCACGATGGCGTCCAAGTGGCCCACCAAGTCCAGGCTGCCGA
Found at i:222399 original size:25 final size:23
Alignment explanation
Indices: 222369--222415 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 23
222359 CTATTCGATT
222369 ATGGCAAACTAGCTACTCTGTTTCG
1 ATGGCAAAC-A-CTACTCTGTTTCG
*
222394 ATGGCAATCACTACTCTGTTTC
1 ATGGCAAACACTACTCTGTTTC
222416 AATCACTAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 12 0.57
24 1 0.05
25 8 0.38
ACGTcount: A:0.23, C:0.26, G:0.17, T:0.34
Consensus pattern (23 bp):
ATGGCAAACACTACTCTGTTTCG
Left flanking sequence: Indices 221869 -- 222368
GCTATTCTGTTCAATGGCAATGATGTTAGCGTATGTACTAGCTATTCAGTTAATTCGAAGGAATC
ACTAGATATTCGAAGGAATCACTAGCTATTCATGGCACACTAGCTATTCATGGCATTCGCTAGCT
GTTCAGTTCATTTACCAGCTGTTCATTTCATCAACCACTAACTATTCTGTTCTTCAATCACTAGC
TATTCAGTTATGGAATCAGTAGAACCCTCTCGCCCGCTTTTGCCATCATTTCCACCCCAGCAAAA
AGCGTTGGGGGGTCTGGGGGGCGCCGCTTGCGGCCCCCCAGCCCAGTATACCCCTATATTCTCTG
GTGGTTTGGTATGATGCTGGTAGTCAACGCTTAATTTATTCAGTCAATCACTAGCTATTTAATTA
TGGCAATGATTAGATACAGAAGGCACACTGGTTATCCGAAGGCACACTAGCTATTCGCACACTAT
CTGTCATTACTAGCTATTCAATTATGGTAACCTGGCTATTCGATT
Right flanking sequence: Indices 222416 -- 222915
AATCACTAAAGTTAGCGTATGTACTAGCTATTCAGTTATGGAATCACTAGTTATTTGAAGGTACA
CTAGCTATTCAAACACACTAGCTATTCATTACGGATCACTCGGTCTCAATGGCAATCACCAACTT
GCCGTGGGCCTTGCCCGCGGTCAACCGCGCAAACGCCTCGCCAAACGCCGGGAACTCGTAGATCT
GGTCAATGTCCACCTTGAGCTTGCCGGCCTTCATCTGCGCCAACGCCGCGGCCACACTGGCGGCG
GACGGCTCCCCCAACACCACGTGGTACCCGCGGCTCGCCAACCCCATCCACAGCGCCGCCGCCCG
CATCACCGGCCACGCCATCGCGGGGATCATCGACCGGATCAGGTCGCGTGCGGTGTCGACCTTGC
GGCACCCCAGCAACGCGTAGTAGCCGCCCGTGGGCGCCACGATGGCGTCCAAGTGGCCCACCAAG
TCCAGGCTGCCGATGCAGTCAAACACGTAGTCGAACGGGCCCATC
Found at i:224514 original size:11 final size:12
Alignment explanation
Indices: 224483--224527 Score: 58
Period size: 11 Copynumber: 3.9 Consensus size: 12
224473 ACGTGAAAAC
*
224483 GTAACGGGAGAC
1 GTAACGGGAGAT
*
224495 GGAAC-GGAGAT
1 GTAACGGGAGAT
224506 GTAA-GGGAGAT
1 GTAACGGGAGAT
224517 GTAACGGGAGA
1 GTAACGGGAGA
224528 CGTCGGGGGG
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
11 18 0.64
12 10 0.36
ACGTcount: A:0.36, C:0.09, G:0.44, T:0.11
Consensus pattern (12 bp):
GTAACGGGAGAT
Left flanking sequence: Indices 223983 -- 224482
CCCCAGACGAGTGCGATGAGTCTTCCCGCGGGGTACGCGTTCCGCCGGGTACAGAAAAGCGACTA
CCAGAACAACTACCTCGAGACCCTCAAGGGGTTGACGGTGGTGGGGGACATTCCCCAGGCGCACT
TTGACCAGACGATCGACTTCTGGAACCAGCTGCCACACGTGTACAACAACATGGTGGTGACCGAC
GCCGGCGGGCGGGTGGTGGCCACGGGGAACCTCGTCGTGGAGCAGAAAATGATCCACCACTGCGG
GCGGGTGGGGCACATCGAGGACATCGCGGTGTCGGCGGACCAGCAGGGCAAGCAGTTGGGCAAGT
TGTTGATCCTGCTGTTGCTCGAGATTGCCCGCCGCGAGAAGTGCTACAAGGTGATTTTGGACTGT
GACCCGAAGAACGTGGGGTTTTACGAGAAGTGCGGCATGGCGCAGTGCGGGGTAGAAATGTCGAT
TCGCTATGACAAATAGACTCTAAATAGACAAGCGAACGTGAAAAC
Right flanking sequence: Indices 224528 -- 225027
CGTCGGGGGGAAAACGCAACGGGATACGCAACGTGAGACGTAACGAGGGAGGCGTAACGAGGGAG
ACGTAACGAGGGAGACGTAACGAGGGAGACGTAACGAGGGACGTAACGAGGAGTAGACGTAACCA
GGAGGCTATTTGTCGAGGGCCTCGAGCGACACCACCGAGCTGCCGCGCACCACCGTGGACCCGAT
GCTGATTTTGTCTCCCAAAGGGTCCTGGCTGATGGCGTCGACCACGGTGATGTTGAGGAACACGT
CGTAGCCCTTGAGCACCCCGACCACCTTGCGGTTGCCGCGGAGGCCCACGGACACGTTTTTGTCC
AAGTACTGGTTGTTAGTAGGGGAGGAGTTGAGGAGGTGGCTGGGTTGAGGTGGCTGGGTTGAGGT
GGCTGGAGTTGAGGAGGTGAAGTTGAGGAGGTGGAGTCGAGGAGGTGGAGTCGAGGAGGTGGAGT
TGAGGAGGTGGAGTTGAGGAGGTGGCTGAGTAGATTGGAGTGGTT
Found at i:224585 original size:14 final size:14
Alignment explanation
Indices: 224562--224655 Score: 147
Period size: 14 Copynumber: 6.7 Consensus size: 14
224552 TACGCAACGT
224562 GAGACGTAACGAGG
1 GAGACGTAACGAGG
*
224576 GAGGCGTAACGAGG
1 GAGACGTAACGAGG
224590 GAGACGTAACGAGG
1 GAGACGTAACGAGG
224604 GAGACGTAACGAGG
1 GAGACGTAACGAGG
224618 GAGACGTAACGA-G
1 GAGACGTAACGAGG
224631 G-GACGTAACGAGG
1 GAGACGTAACGAGG
224644 AGTAGACGTAAC
1 -G-AGACGTAAC
224656 CAGGAGGCTA
Statistics
Matches: 74, Mismatches: 2, Indels: 6
0.90 0.02 0.07
Matches are distributed among these distances:
12 10 0.14
13 3 0.04
14 53 0.72
16 8 0.11
ACGTcount: A:0.35, C:0.15, G:0.41, T:0.09
Consensus pattern (14 bp):
GAGACGTAACGAGG
Left flanking sequence: Indices 224062 -- 224561
TCGAGACCCTCAAGGGGTTGACGGTGGTGGGGGACATTCCCCAGGCGCACTTTGACCAGACGATC
GACTTCTGGAACCAGCTGCCACACGTGTACAACAACATGGTGGTGACCGACGCCGGCGGGCGGGT
GGTGGCCACGGGGAACCTCGTCGTGGAGCAGAAAATGATCCACCACTGCGGGCGGGTGGGGCACA
TCGAGGACATCGCGGTGTCGGCGGACCAGCAGGGCAAGCAGTTGGGCAAGTTGTTGATCCTGCTG
TTGCTCGAGATTGCCCGCCGCGAGAAGTGCTACAAGGTGATTTTGGACTGTGACCCGAAGAACGT
GGGGTTTTACGAGAAGTGCGGCATGGCGCAGTGCGGGGTAGAAATGTCGATTCGCTATGACAAAT
AGACTCTAAATAGACAAGCGAACGTGAAAACGTAACGGGAGACGGAACGGAGATGTAAGGGAGAT
GTAACGGGAGACGTCGGGGGGAAAACGCAACGGGATACGCAACGT
Right flanking sequence: Indices 224656 -- 225155
CAGGAGGCTATTTGTCGAGGGCCTCGAGCGACACCACCGAGCTGCCGCGCACCACCGTGGACCCG
ATGCTGATTTTGTCTCCCAAAGGGTCCTGGCTGATGGCGTCGACCACGGTGATGTTGAGGAACAC
GTCGTAGCCCTTGAGCACCCCGACCACCTTGCGGTTGCCGCGGAGGCCCACGGACACGTTTTTGT
CCAAGTACTGGTTGTTAGTAGGGGAGGAGTTGAGGAGGTGGCTGGGTTGAGGTGGCTGGGTTGAG
GTGGCTGGAGTTGAGGAGGTGAAGTTGAGGAGGTGGAGTCGAGGAGGTGGAGTCGAGGAGGTGGA
GTTGAGGAGGTGGAGTTGAGGAGGTGGCTGAGTAGATTGGAGTGGTTTGGGTGGATTGGTTTGAA
AATGGGTGGGAATAATAGGGTAGATGGGGTGGATGGGTGGATGGGTGGATGGGTGATGGGTGATG
GGAGGATGGGTGGATGGGAATAGTTTGGTTCTCATTCAAATAGAC
Found at i:224941 original size:14 final size:14
Alignment explanation
Indices: 224876--225007 Score: 158
Period size: 14 Copynumber: 9.1 Consensus size: 14
224866 TAGTAGGGGA
224876 GGAGTTGAGGAGGT
1 GGAGTTGAGGAGGT
* *
224890 GGCTGGGTTGAGGTGGCT
1 -G--GAGTTGAGGAGG-T
*
224908 GG-GTTGAGGTGGCT
1 GGAGTTGAGGAGG-T
224922 GGAGTTGAGGAGGT
1 GGAGTTGAGGAGGT
*
224936 GAAGTTGAGGAGGT
1 GGAGTTGAGGAGGT
*
224950 GGAGTCGAGGAGGT
1 GGAGTTGAGGAGGT
*
224964 GGAGTCGAGGAGGT
1 GGAGTTGAGGAGGT
224978 GGAGTTGAGGAGGT
1 GGAGTTGAGGAGGT
224992 GGAGTTGAGGAGGT
1 GGAGTTGAGGAGGT
225006 GG
1 GG
225008 CTGAGTAGAT
Statistics
Matches: 106, Mismatches: 7, Indels: 9
0.87 0.06 0.07
Matches are distributed among these distances:
14 83 0.78
15 11 0.10
17 11 0.10
18 1 0.01
ACGTcount: A:0.18, C:0.04, G:0.57, T:0.21
Consensus pattern (14 bp):
GGAGTTGAGGAGGT
Left flanking sequence: Indices 224376 -- 224875
CCGAAGAACGTGGGGTTTTACGAGAAGTGCGGCATGGCGCAGTGCGGGGTAGAAATGTCGATTCG
CTATGACAAATAGACTCTAAATAGACAAGCGAACGTGAAAACGTAACGGGAGACGGAACGGAGAT
GTAAGGGAGATGTAACGGGAGACGTCGGGGGGAAAACGCAACGGGATACGCAACGTGAGACGTAA
CGAGGGAGGCGTAACGAGGGAGACGTAACGAGGGAGACGTAACGAGGGAGACGTAACGAGGGACG
TAACGAGGAGTAGACGTAACCAGGAGGCTATTTGTCGAGGGCCTCGAGCGACACCACCGAGCTGC
CGCGCACCACCGTGGACCCGATGCTGATTTTGTCTCCCAAAGGGTCCTGGCTGATGGCGTCGACC
ACGGTGATGTTGAGGAACACGTCGTAGCCCTTGAGCACCCCGACCACCTTGCGGTTGCCGCGGAG
GCCCACGGACACGTTTTTGTCCAAGTACTGGTTGTTAGTAGGGGA
Right flanking sequence: Indices 225008 -- 225507
CTGAGTAGATTGGAGTGGTTTGGGTGGATTGGTTTGAAAATGGGTGGGAATAATAGGGTAGATGG
GGTGGATGGGTGGATGGGTGGATGGGTGATGGGTGATGGGAGGATGGGTGGATGGGAATAGTTTG
GTTCTCATTCAAATAGACACTCCTGGGAATAGTTTGCTCCTTATTCAATAGACACTCCGGTGAAC
GACCATCAACCAGCCTGCACCGTACATACCGTTTTGAGTTCGGGTTCAGACAACATGGCGGTGGT
GATGTTCTCGGCGCGACCATCTCTATCACGCACCGGTGCGGCTCAAAAGTAAACAAACATGAGCG
ACTTTGAGCCGGTGTCCGACATCGACGGGTCTGCGTCCGACGACCAGGCAGTGACCGACGCCGGC
GCGGCCGCCATCCGCGACGAGGCCAACAGGCTCTCCCTCGCCAAAACCCGCCGCGACGAGTTGTT
GGCCCGCAAGGCCCAGTTGGAATCAGCCGTGCTCGACGCCCAGCT
Found at i:225085 original size:8 final size:8
Alignment explanation
Indices: 225072--225128 Score: 91
Period size: 8 Copynumber: 7.4 Consensus size: 8
225062 AGGGTAGATG
225072 GGGTGGAT
1 GGGTGGAT
225080 GGGTGGAT
1 GGGTGGAT
225088 GGGTGGAT
1 GGGTGGAT
225096 GGGT-GAT
1 GGGTGGAT
225103 GGGT-GAT
1 GGGTGGAT
*
225110 GGGAGGAT
1 GGGTGGAT
225118 GGGTGGAT
1 GGGTGGAT
225126 GGG
1 GGG
225129 AATAGTTTGG
Statistics
Matches: 46, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
7 13 0.28
8 33 0.72
ACGTcount: A:0.14, C:0.00, G:0.63, T:0.23
Consensus pattern (8 bp):
GGGTGGAT
Left flanking sequence: Indices 224572 -- 225071
GAGGGAGGCGTAACGAGGGAGACGTAACGAGGGAGACGTAACGAGGGAGACGTAACGAGGGACGT
AACGAGGAGTAGACGTAACCAGGAGGCTATTTGTCGAGGGCCTCGAGCGACACCACCGAGCTGCC
GCGCACCACCGTGGACCCGATGCTGATTTTGTCTCCCAAAGGGTCCTGGCTGATGGCGTCGACCA
CGGTGATGTTGAGGAACACGTCGTAGCCCTTGAGCACCCCGACCACCTTGCGGTTGCCGCGGAGG
CCCACGGACACGTTTTTGTCCAAGTACTGGTTGTTAGTAGGGGAGGAGTTGAGGAGGTGGCTGGG
TTGAGGTGGCTGGGTTGAGGTGGCTGGAGTTGAGGAGGTGAAGTTGAGGAGGTGGAGTCGAGGAG
GTGGAGTCGAGGAGGTGGAGTTGAGGAGGTGGAGTTGAGGAGGTGGCTGAGTAGATTGGAGTGGT
TTGGGTGGATTGGTTTGAAAATGGGTGGGAATAATAGGGTAGATG
Right flanking sequence: Indices 225129 -- 225628
AATAGTTTGGTTCTCATTCAAATAGACACTCCTGGGAATAGTTTGCTCCTTATTCAATAGACACT
CCGGTGAACGACCATCAACCAGCCTGCACCGTACATACCGTTTTGAGTTCGGGTTCAGACAACAT
GGCGGTGGTGATGTTCTCGGCGCGACCATCTCTATCACGCACCGGTGCGGCTCAAAAGTAAACAA
ACATGAGCGACTTTGAGCCGGTGTCCGACATCGACGGGTCTGCGTCCGACGACCAGGCAGTGACC
GACGCCGGCGCGGCCGCCATCCGCGACGAGGCCAACAGGCTCTCCCTCGCCAAAACCCGCCGCGA
CGAGTTGTTGGCCCGCAAGGCCCAGTTGGAATCAGCCGTGCTCGACGCCCAGCTCAAGGCCCGCG
AGCGCGAAGAGAAGCCCGATTCGGTGGCGCCGGGCATTCCCGCAGTGTCCATCCCCCACTACGGG
CCCACCGCCCAACTGCTAGGGGTCTTCCCGCTGACCAACTGGGAC
Found at i:225118 original size:30 final size:33
Alignment explanation
Indices: 225063--225128 Score: 102
Period size: 30 Copynumber: 2.1 Consensus size: 33
225053 GGGAATAATA
*
225063 GGGTAGATGGGGTGGATGGGTGGATGGGTGGAT
1 GGGTAGATGGGGTGGATGGGAGGATGGGTGGAT
225096 GGGT-GAT-GGGT-GATGGGAGGATGGGTGGAT
1 GGGTAGATGGGGTGGATGGGAGGATGGGTGGAT
225126 GGG
1 GGG
225129 AATAGTTTGG
Statistics
Matches: 32, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
30 21 0.66
31 4 0.12
32 3 0.09
33 4 0.12
ACGTcount: A:0.15, C:0.00, G:0.62, T:0.23
Consensus pattern (33 bp):
GGGTAGATGGGGTGGATGGGAGGATGGGTGGAT
Left flanking sequence: Indices 224563 -- 225062
AGACGTAACGAGGGAGGCGTAACGAGGGAGACGTAACGAGGGAGACGTAACGAGGGAGACGTAAC
GAGGGACGTAACGAGGAGTAGACGTAACCAGGAGGCTATTTGTCGAGGGCCTCGAGCGACACCAC
CGAGCTGCCGCGCACCACCGTGGACCCGATGCTGATTTTGTCTCCCAAAGGGTCCTGGCTGATGG
CGTCGACCACGGTGATGTTGAGGAACACGTCGTAGCCCTTGAGCACCCCGACCACCTTGCGGTTG
CCGCGGAGGCCCACGGACACGTTTTTGTCCAAGTACTGGTTGTTAGTAGGGGAGGAGTTGAGGAG
GTGGCTGGGTTGAGGTGGCTGGGTTGAGGTGGCTGGAGTTGAGGAGGTGAAGTTGAGGAGGTGGA
GTCGAGGAGGTGGAGTCGAGGAGGTGGAGTTGAGGAGGTGGAGTTGAGGAGGTGGCTGAGTAGAT
TGGAGTGGTTTGGGTGGATTGGTTTGAAAATGGGTGGGAATAATA
Right flanking sequence: Indices 225129 -- 225628
AATAGTTTGGTTCTCATTCAAATAGACACTCCTGGGAATAGTTTGCTCCTTATTCAATAGACACT
CCGGTGAACGACCATCAACCAGCCTGCACCGTACATACCGTTTTGAGTTCGGGTTCAGACAACAT
GGCGGTGGTGATGTTCTCGGCGCGACCATCTCTATCACGCACCGGTGCGGCTCAAAAGTAAACAA
ACATGAGCGACTTTGAGCCGGTGTCCGACATCGACGGGTCTGCGTCCGACGACCAGGCAGTGACC
GACGCCGGCGCGGCCGCCATCCGCGACGAGGCCAACAGGCTCTCCCTCGCCAAAACCCGCCGCGA
CGAGTTGTTGGCCCGCAAGGCCCAGTTGGAATCAGCCGTGCTCGACGCCCAGCTCAAGGCCCGCG
AGCGCGAAGAGAAGCCCGATTCGGTGGCGCCGGGCATTCCCGCAGTGTCCATCCCCCACTACGGG
CCCACCGCCCAACTGCTAGGGGTCTTCCCGCTGACCAACTGGGAC
Found at i:225195 original size:35 final size:36
Alignment explanation
Indices: 225125--225195 Score: 108
Period size: 36 Copynumber: 2.0 Consensus size: 36
225115 GATGGGTGGA
* *
225125 TGGGAATAGTTTGGTTCTCATTCAAATAGACACTCC
1 TGGGAATAGTTTGCTCCTCATTCAAATAGACACTCC
*
225161 TGGGAATAGTTTGCTCCTTATTC-AATAGACACTCC
1 TGGGAATAGTTTGCTCCTCATTCAAATAGACACTCC
225196 GGTGAACGAC
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
35 12 0.38
36 20 0.62
ACGTcount: A:0.27, C:0.21, G:0.18, T:0.34
Consensus pattern (36 bp):
TGGGAATAGTTTGCTCCTCATTCAAATAGACACTCC
Left flanking sequence: Indices 224625 -- 225124
AACGAGGGACGTAACGAGGAGTAGACGTAACCAGGAGGCTATTTGTCGAGGGCCTCGAGCGACAC
CACCGAGCTGCCGCGCACCACCGTGGACCCGATGCTGATTTTGTCTCCCAAAGGGTCCTGGCTGA
TGGCGTCGACCACGGTGATGTTGAGGAACACGTCGTAGCCCTTGAGCACCCCGACCACCTTGCGG
TTGCCGCGGAGGCCCACGGACACGTTTTTGTCCAAGTACTGGTTGTTAGTAGGGGAGGAGTTGAG
GAGGTGGCTGGGTTGAGGTGGCTGGGTTGAGGTGGCTGGAGTTGAGGAGGTGAAGTTGAGGAGGT
GGAGTCGAGGAGGTGGAGTCGAGGAGGTGGAGTTGAGGAGGTGGAGTTGAGGAGGTGGCTGAGTA
GATTGGAGTGGTTTGGGTGGATTGGTTTGAAAATGGGTGGGAATAATAGGGTAGATGGGGTGGAT
GGGTGGATGGGTGGATGGGTGATGGGTGATGGGAGGATGGGTGGA
Right flanking sequence: Indices 225196 -- 225695
GGTGAACGACCATCAACCAGCCTGCACCGTACATACCGTTTTGAGTTCGGGTTCAGACAACATGG
CGGTGGTGATGTTCTCGGCGCGACCATCTCTATCACGCACCGGTGCGGCTCAAAAGTAAACAAAC
ATGAGCGACTTTGAGCCGGTGTCCGACATCGACGGGTCTGCGTCCGACGACCAGGCAGTGACCGA
CGCCGGCGCGGCCGCCATCCGCGACGAGGCCAACAGGCTCTCCCTCGCCAAAACCCGCCGCGACG
AGTTGTTGGCCCGCAAGGCCCAGTTGGAATCAGCCGTGCTCGACGCCCAGCTCAAGGCCCGCGAG
CGCGAAGAGAAGCCCGATTCGGTGGCGCCGGGCATTCCCGCAGTGTCCATCCCCCACTACGGGCC
CACCGCCCAACTGCTAGGGGTCTTCCCGCTGACCAACTGGGACGAGCGGCTCGCGTACATCCGCA
AGTTCATGCCCGACATCGACGTCGAGGACGTGCACCACACGTACG
Found at i:226495 original size:17 final size:17
Alignment explanation
Indices: 226473--226644 Score: 135
Period size: 17 Copynumber: 10.4 Consensus size: 17
226463 AATGAGTTTA
226473 CAGTCACG-GATCGATAC
1 CAGTCACGAG-TCGATAC
226490 CAGTCACGAGTCGATA-
1 CAGTCACGAGTCGATAC
* * *
226506 CAGCCACTAGTCGGTAC
1 CAGTCACGAGTCGATAC
* * *
226523 CGGTCACCAGTCCATAC
1 CAGTCACGAGTCGATAC
* *
226540 GAGT-ACGAGTGGATAC
1 CAGTCACGAGTCGATAC
* *
226556 CAGTTTA-GAGTTGATAC
1 CAG-TCACGAGTCGATAC
*
226573 CAGTTTA-GAGTCGATAC
1 CAG-TCACGAGTCGATAC
226590 CAGT-ACGAGTCGATAC
1 CAGTCACGAGTCGATAC
226606 CAGT-ACGAGTCGATA-
1 CAGTCACGAGTCGATAC
* *
226621 CAGTCACCAGTCGGTAC
1 CAGTCACGAGTCGATAC
*
226638 CGGTCAC
1 CAGTCAC
226645 TCGTTCAAAC
Statistics
Matches: 129, Mismatches: 19, Indels: 14
0.80 0.12 0.09
Matches are distributed among these distances:
15 5 0.04
16 59 0.46
17 63 0.49
18 2 0.02
ACGTcount: A:0.28, C:0.26, G:0.25, T:0.21
Consensus pattern (17 bp):
CAGTCACGAGTCGATAC
Left flanking sequence: Indices 225973 -- 226472
GGTGGCTCCAAAGCCGTATCCCGAGGCGTCCAAGTACGACAACCTCGTGGTGTACGCGCTGCTCA
AGAGCAAGTCGCTGATGTCGTTTGACGTGACGACGTCCGACCCGCCGACAACCCACCAGGTGACG
CTTCTTTGGCACACGCGGATAGGCGACACCGTTACTGGTGACAGTGTGCGGGATCTCTCGCTTCT
GGTGGTGCAAAAGGACACCAATGTGTATCTCGCGGGGGCCAACGAGTTGTTTGCGGCGTCGCTCG
AGAAGCACGACAACGTGGTGGACGCCGTGGCCAACGTGGTGGAGCAATTGTTTAACGTGAAGCTA
CTAGAGTCGTGAGGTTATCAGAGAAGATGGAGACGAGTCATGGAATCAGGTTTGGTTAGCCATAG
TTACAGGTAAACCAGGTACCACCTAACCACTGTGCTTACCAATGACGATATTACGGTTAGAGAAT
ACCGGTCGACTTCACAATACGCGAAGACCACCGTTAATGAGTTTA
Right flanking sequence: Indices 226645 -- 227144
TCGTTCAAACCATCCACTCGTAAACCATTCACTCGTAAACCATTCACTCGTAAACCATTCAACCA
CATCAGCCATCTCTAGACACTACACCGCTGGTACCCTTATCATTATCAACACTACTACATAACAC
TAATAGATCACTACCGTGCATTCCCGTTGTGGGGTGCTAGTGCGAAACGCGGGTGCGCGGCAGCC
AATCATCTGACAGAATTCTCATCCTGCGTGCAGGCCAACCAGTGAGGGCCCGAATTTTCGCGGGA
AATTTTCAAGGTTTGCGAGACAACAGACCCATATTCAATCATGTCGTCGTTTATGATCAGAAGAA
GTCTTTCCACTCTTATCCCCCCTAAGATCGCTTCGGCTAAGGTGAGTAGCCACGCCCATTTGAGA
GACCCTGGCCAATGAGCTTCCCTGTCAAGACCATCCCATTGAGCGACGAGAACGGTTGAACCAGA
TTGAACGGTTGAACCGATTGAACTGTTGAACCAGATTGTTCGACC
Found at i:226633 original size:16 final size:16
Alignment explanation
Indices: 226483--226621 Score: 113
Period size: 16 Copynumber: 8.4 Consensus size: 16
226473 CAGTCACGGA
226483 TCGATACCAGTCACGAG
1 TCGATACCAGT-ACGAG
* *
226500 TCGATA-CAGCCACTAG
1 TCGATACCAG-TACGAG
* * *
226516 TCGGTACCGGTCACCAG
1 TCGATACCAGT-ACGAG
* *
226533 TCCATACGAGTACGAG
1 TCGATACCAGTACGAG
*
226549 TGGATACCAGTTTA-GAG
1 TCGATACCAG--TACGAG
*
226566 TTGATACCAGTTTA-GAG
1 TCGATACCAG--TACGAG
226583 TCGATACCAGTACGAG
1 TCGATACCAGTACGAG
226599 TCGATACCAGTACGAG
1 TCGATACCAGTACGAG
226615 TCGATAC
1 TCGATAC
226622 AGTCACCAGT
Statistics
Matches: 100, Mismatches: 16, Indels: 13
0.78 0.12 0.10
Matches are distributed among these distances:
15 2 0.02
16 49 0.49
17 47 0.47
18 2 0.02
ACGTcount: A:0.29, C:0.24, G:0.24, T:0.22
Consensus pattern (16 bp):
TCGATACCAGTACGAG
Left flanking sequence: Indices 225983 -- 226482
AAGCCGTATCCCGAGGCGTCCAAGTACGACAACCTCGTGGTGTACGCGCTGCTCAAGAGCAAGTC
GCTGATGTCGTTTGACGTGACGACGTCCGACCCGCCGACAACCCACCAGGTGACGCTTCTTTGGC
ACACGCGGATAGGCGACACCGTTACTGGTGACAGTGTGCGGGATCTCTCGCTTCTGGTGGTGCAA
AAGGACACCAATGTGTATCTCGCGGGGGCCAACGAGTTGTTTGCGGCGTCGCTCGAGAAGCACGA
CAACGTGGTGGACGCCGTGGCCAACGTGGTGGAGCAATTGTTTAACGTGAAGCTACTAGAGTCGT
GAGGTTATCAGAGAAGATGGAGACGAGTCATGGAATCAGGTTTGGTTAGCCATAGTTACAGGTAA
ACCAGGTACCACCTAACCACTGTGCTTACCAATGACGATATTACGGTTAGAGAATACCGGTCGAC
TTCACAATACGCGAAGACCACCGTTAATGAGTTTACAGTCACGGA
Right flanking sequence: Indices 226622 -- 227121
AGTCACCAGTCGGTACCGGTCACTCGTTCAAACCATCCACTCGTAAACCATTCACTCGTAAACCA
TTCACTCGTAAACCATTCAACCACATCAGCCATCTCTAGACACTACACCGCTGGTACCCTTATCA
TTATCAACACTACTACATAACACTAATAGATCACTACCGTGCATTCCCGTTGTGGGGTGCTAGTG
CGAAACGCGGGTGCGCGGCAGCCAATCATCTGACAGAATTCTCATCCTGCGTGCAGGCCAACCAG
TGAGGGCCCGAATTTTCGCGGGAAATTTTCAAGGTTTGCGAGACAACAGACCCATATTCAATCAT
GTCGTCGTTTATGATCAGAAGAAGTCTTTCCACTCTTATCCCCCCTAAGATCGCTTCGGCTAAGG
TGAGTAGCCACGCCCATTTGAGAGACCCTGGCCAATGAGCTTCCCTGTCAAGACCATCCCATTGA
GCGACGAGAACGGTTGAACCAGATTGAACGGTTGAACCGATTGAA
Found at i:226671 original size:15 final size:15
Alignment explanation
Indices: 226641--226705 Score: 103
Period size: 15 Copynumber: 4.2 Consensus size: 15
226631 TCGGTACCGG
226641 TCACTCGTTCAAACCAT
1 TCACTCG-T-AAACCAT
*
226658 CCACTCGTAAACCAT
1 TCACTCGTAAACCAT
226673 TCACTCGTAAACCAT
1 TCACTCGTAAACCAT
226688 TCACTCGTAAACCAT
1 TCACTCGTAAACCAT
226703 TCA
1 TCA
226706 ACCACATCAG
Statistics
Matches: 46, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
15 39 0.85
16 1 0.02
17 6 0.13
ACGTcount: A:0.32, C:0.35, G:0.06, T:0.26
Consensus pattern (15 bp):
TCACTCGTAAACCAT
Left flanking sequence: Indices 226141 -- 226640
TGACAGTGTGCGGGATCTCTCGCTTCTGGTGGTGCAAAAGGACACCAATGTGTATCTCGCGGGGG
CCAACGAGTTGTTTGCGGCGTCGCTCGAGAAGCACGACAACGTGGTGGACGCCGTGGCCAACGTG
GTGGAGCAATTGTTTAACGTGAAGCTACTAGAGTCGTGAGGTTATCAGAGAAGATGGAGACGAGT
CATGGAATCAGGTTTGGTTAGCCATAGTTACAGGTAAACCAGGTACCACCTAACCACTGTGCTTA
CCAATGACGATATTACGGTTAGAGAATACCGGTCGACTTCACAATACGCGAAGACCACCGTTAAT
GAGTTTACAGTCACGGATCGATACCAGTCACGAGTCGATACAGCCACTAGTCGGTACCGGTCACC
AGTCCATACGAGTACGAGTGGATACCAGTTTAGAGTTGATACCAGTTTAGAGTCGATACCAGTAC
GAGTCGATACCAGTACGAGTCGATACAGTCACCAGTCGGTACCGG
Right flanking sequence: Indices 226706 -- 227205
ACCACATCAGCCATCTCTAGACACTACACCGCTGGTACCCTTATCATTATCAACACTACTACATA
ACACTAATAGATCACTACCGTGCATTCCCGTTGTGGGGTGCTAGTGCGAAACGCGGGTGCGCGGC
AGCCAATCATCTGACAGAATTCTCATCCTGCGTGCAGGCCAACCAGTGAGGGCCCGAATTTTCGC
GGGAAATTTTCAAGGTTTGCGAGACAACAGACCCATATTCAATCATGTCGTCGTTTATGATCAGA
AGAAGTCTTTCCACTCTTATCCCCCCTAAGATCGCTTCGGCTAAGGTGAGTAGCCACGCCCATTT
GAGAGACCCTGGCCAATGAGCTTCCCTGTCAAGACCATCCCATTGAGCGACGAGAACGGTTGAAC
CAGATTGAACGGTTGAACCGATTGAACTGTTGAACCAGATTGTTCGACCGTCCACAAGCACGTTC
ACGTACACGTTCAAGACAAATATTCCTTGTGTTTCCTAAGCATTC
Found at i:227120 original size:17 final size:18
Alignment explanation
Indices: 227084--227137 Score: 92
Period size: 18 Copynumber: 3.1 Consensus size: 18
227074 TGAGCGACGA
227084 GAACGGTTGAACCAGATT
1 GAACGGTTGAACCAGATT
227102 GAACGGTTGAACC-GATT
1 GAACGGTTGAACCAGATT
*
227119 GAACTGTTGAACCAGATT
1 GAACGGTTGAACCAGATT
227137 G
1 G
227138 TTCGACCGTC
Statistics
Matches: 34, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
17 16 0.47
18 18 0.53
ACGTcount: A:0.31, C:0.17, G:0.28, T:0.24
Consensus pattern (18 bp):
GAACGGTTGAACCAGATT
Left flanking sequence: Indices 226584 -- 227083
CGATACCAGTACGAGTCGATACCAGTACGAGTCGATACAGTCACCAGTCGGTACCGGTCACTCGT
TCAAACCATCCACTCGTAAACCATTCACTCGTAAACCATTCACTCGTAAACCATTCAACCACATC
AGCCATCTCTAGACACTACACCGCTGGTACCCTTATCATTATCAACACTACTACATAACACTAAT
AGATCACTACCGTGCATTCCCGTTGTGGGGTGCTAGTGCGAAACGCGGGTGCGCGGCAGCCAATC
ATCTGACAGAATTCTCATCCTGCGTGCAGGCCAACCAGTGAGGGCCCGAATTTTCGCGGGAAATT
TTCAAGGTTTGCGAGACAACAGACCCATATTCAATCATGTCGTCGTTTATGATCAGAAGAAGTCT
TTCCACTCTTATCCCCCCTAAGATCGCTTCGGCTAAGGTGAGTAGCCACGCCCATTTGAGAGACC
CTGGCCAATGAGCTTCCCTGTCAAGACCATCCCATTGAGCGACGA
Right flanking sequence: Indices 227138 -- 227637
TTCGACCGTCCACAAGCACGTTCACGTACACGTTCAAGACAAATATTCCTTGTGTTTCCTAAGCA
TTCCAAGCTCATCTACCCCCACACATCCCTGCTCCCTGCCATTGCCAGGCCTTCCCCACGCACAT
ACTAACTATCCAGAACTTGGGCTCCAACCCCAACGCCAAGAGAATGCAGGAGGTTGTTTCCTTCT
ACAAGAAGCTCCCCCAGGGTGCCGCCCCTGCCCCCAAGAAGCCCACTACTCCCTGGGGCAAGTAC
AAGGCTGCCTACTTTGACGGTGACAACGCTTCTGGCAAGCCTTTGCTCCACTTGGCCGTGGCCAT
TGTTGTGTTGGGCTACACCTGGGAGTACAACTCGCACTTGAAGCACCACCACTAAGCATGCTGCT
TCCGCAGAGCAAGGGTCCCATCTCGCCGTCGCGCGCTAGCATCCCCTTGTGACGCCTGGAATAAT
ATATACATATATTTATACACATTTCGAAGAACCCCTGGGGCGCCC
Found at i:228278 original size:12 final size:12
Alignment explanation
Indices: 228257--228300 Score: 54
Period size: 12 Copynumber: 3.7 Consensus size: 12
228247 ACCGAAATTC
*
228257 CCACCTACCTTT
1 CCACCCACCTTT
228269 CCACCCACCTTT
1 CCACCCACCTTT
*
228281 CCACTCA-CTTT
1 CCACCCACCTTT
228292 CTCACCCAC
1 C-CACCCAC
228301 TTCTCACCCA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
11 5 0.19
12 22 0.81
ACGTcount: A:0.18, C:0.55, G:0.00, T:0.27
Consensus pattern (12 bp):
CCACCCACCTTT
Left flanking sequence: Indices 227757 -- 228256
ATGTGACATCCGAGTTGCGGTCTTGGCTGCGATTGTGTCACCGGCTATTGCCAACGATTGTAGGC
GGGAGGGCAATGCTGGATCCGCGGCTCGCTTCCCGCGGTCCCTGAGTGCACAAGAATGAGCACCA
CAAACGTGCTTGGCGATTATCGCGTGCTGATACCGCATGGGGAACATTCCGTGCCTCGGTAGGAG
GCCCAGTGCTCGTGTGGACACGTTCGGAGGCGGCCCGCACGAGCGTGTCGGGGTTATGCACAGTG
TTATCATGCTCCACAGCCGACGATGACTCACGGGTTACGGTGACTCGTATTGTATGTATGCAATT
GCTGGAGTACCACGTATGTATCAATCGAGTTGCCAACCTTCTGGGATTTATTTCTGTCACTTGAG
CCAATAAGCCAGTAACGTACCTATCAATTTACCATTGTCTATGCGCTAAGCTATTACTTCTCCTA
CATATCTTTACACCCATTTTCCCACCCACAATTCCACCGAAATTC
Right flanking sequence: Indices 228301 -- 228800
TTCTCACCCACGTCCACCCACATCCCTACCCATTTCTACCCACTTTCTCACCCACTTTCTCACAT
TCCTACTATTTTCCCACATTTCCATTCTCCCCCACACCACCCACTTTTTCCACCCACTTTTCCAC
CCAATTCTCCACCCAATTCTCCACCCACTTTTCCACCCACTTCTCCGCCCACTCTCCACACACTT
TTCCCACCCATAACCACCCTACCCACCCTAAACCCCTATCCCACCTTCACCTCTTAGTACCACAT
TGCTGGGCCCTACATCGGAGCAACGCTCGGGGAACCCGGAACCGACCACCGCCATCACCTCTCAC
TTACCCCTGGTTTTACTGCCGACACTGTAGCCAAGCTGTAGCCACGTTGGCTGGGCAACACGCGC
CCCGCACGCGCCACCGCCCGCCACCTACACCCGTCTACACCGGGCCGCCGAGCCGCTGAGCCGCT
GCCACGAAACCGGACCCGTCGTCGTTCCGCGGGCCGGGCAATTGT
Found at i:228301 original size:12 final size:12
Alignment explanation
Indices: 228265--228363 Score: 88
Period size: 12 Copynumber: 8.8 Consensus size: 12
228255 TCCCACCTAC
228265 CTTTC-CACCCA
1 CTTTCTCACCCA
*
228276 CCTTTC-CACTCA
1 -CTTTCTCACCCA
228288 CTTTCTCACCCA
1 CTTTCTCACCCA
228300 C-TTCTCACCCA
1 CTTTCTCACCCA
*
228311 C-GTC-CACCCA
1 CTTTCTCACCCA
* *
228321 C-ATCCCTACCCA
1 CTTTCTC-ACCCA
228333 -TTTCT-ACCCA
1 CTTTCTCACCCA
228343 CTTTCTCACCCA
1 CTTTCTCACCCA
228355 CTTTCTCAC
1 CTTTCTCAC
228364 ATTCCTACTA
Statistics
Matches: 75, Mismatches: 6, Indels: 12
0.81 0.06 0.13
Matches are distributed among these distances:
10 14 0.19
11 24 0.32
12 37 0.49
ACGTcount: A:0.18, C:0.52, G:0.01, T:0.29
Consensus pattern (12 bp):
CTTTCTCACCCA
Left flanking sequence: Indices 227765 -- 228264
TCCGAGTTGCGGTCTTGGCTGCGATTGTGTCACCGGCTATTGCCAACGATTGTAGGCGGGAGGGC
AATGCTGGATCCGCGGCTCGCTTCCCGCGGTCCCTGAGTGCACAAGAATGAGCACCACAAACGTG
CTTGGCGATTATCGCGTGCTGATACCGCATGGGGAACATTCCGTGCCTCGGTAGGAGGCCCAGTG
CTCGTGTGGACACGTTCGGAGGCGGCCCGCACGAGCGTGTCGGGGTTATGCACAGTGTTATCATG
CTCCACAGCCGACGATGACTCACGGGTTACGGTGACTCGTATTGTATGTATGCAATTGCTGGAGT
ACCACGTATGTATCAATCGAGTTGCCAACCTTCTGGGATTTATTTCTGTCACTTGAGCCAATAAG
CCAGTAACGTACCTATCAATTTACCATTGTCTATGCGCTAAGCTATTACTTCTCCTACATATCTT
TACACCCATTTTCCCACCCACAATTCCACCGAAATTCCCACCTAC
Right flanking sequence: Indices 228364 -- 228863
ATTCCTACTATTTTCCCACATTTCCATTCTCCCCCACACCACCCACTTTTTCCACCCACTTTTCC
ACCCAATTCTCCACCCAATTCTCCACCCACTTTTCCACCCACTTCTCCGCCCACTCTCCACACAC
TTTTCCCACCCATAACCACCCTACCCACCCTAAACCCCTATCCCACCTTCACCTCTTAGTACCAC
ATTGCTGGGCCCTACATCGGAGCAACGCTCGGGGAACCCGGAACCGACCACCGCCATCACCTCTC
ACTTACCCCTGGTTTTACTGCCGACACTGTAGCCAAGCTGTAGCCACGTTGGCTGGGCAACACGC
GCCCCGCACGCGCCACCGCCCGCCACCTACACCCGTCTACACCGGGCCGCCGAGCCGCTGAGCCG
CTGCCACGAAACCGGACCCGTCGTCGTTCCGCGGGCCGGGCAATTGTCGGACGATACCCCTGACC
ACCGTCCGAGCGACTCCCAGCAGTTTAGCCTAGACACGTATTTTT
Found at i:228428 original size:12 final size:12
Alignment explanation
Indices: 228402--228505 Score: 111
Period size: 12 Copynumber: 8.6 Consensus size: 12
228392 CTCCCCCACA
*
228402 CCACCCACTTTTT
1 CCACCCAC-TTCT
*
228415 CCACCCACTTTT
1 CCACCCACTTCT
*
228427 CCACCCAATTCT
1 CCACCCACTTCT
*
228439 CCACCCAATTCT
1 CCACCCACTTCT
*
228451 CCACCCACTTTT
1 CCACCCACTTCT
228463 CCACCCACTTCT
1 CCACCCACTTCT
*
228475 CCGCCCAC-TCT
1 CCACCCACTTCT
* *
228486 CCACACACTTTT
1 CCACCCACTTCT
228498 CCCACCCA
1 -CCACCCA
228506 TAACCACCCT
Statistics
Matches: 79, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
11 9 0.11
12 56 0.71
13 14 0.18
ACGTcount: A:0.19, C:0.53, G:0.01, T:0.27
Consensus pattern (12 bp):
CCACCCACTTCT
Left flanking sequence: Indices 227902 -- 228401
ATTATCGCGTGCTGATACCGCATGGGGAACATTCCGTGCCTCGGTAGGAGGCCCAGTGCTCGTGT
GGACACGTTCGGAGGCGGCCCGCACGAGCGTGTCGGGGTTATGCACAGTGTTATCATGCTCCACA
GCCGACGATGACTCACGGGTTACGGTGACTCGTATTGTATGTATGCAATTGCTGGAGTACCACGT
ATGTATCAATCGAGTTGCCAACCTTCTGGGATTTATTTCTGTCACTTGAGCCAATAAGCCAGTAA
CGTACCTATCAATTTACCATTGTCTATGCGCTAAGCTATTACTTCTCCTACATATCTTTACACCC
ATTTTCCCACCCACAATTCCACCGAAATTCCCACCTACCTTTCCACCCACCTTTCCACTCACTTT
CTCACCCACTTCTCACCCACGTCCACCCACATCCCTACCCATTTCTACCCACTTTCTCACCCACT
TTCTCACATTCCTACTATTTTCCCACATTTCCATTCTCCCCCACA
Right flanking sequence: Indices 228506 -- 229005
TAACCACCCTACCCACCCTAAACCCCTATCCCACCTTCACCTCTTAGTACCACATTGCTGGGCCC
TACATCGGAGCAACGCTCGGGGAACCCGGAACCGACCACCGCCATCACCTCTCACTTACCCCTGG
TTTTACTGCCGACACTGTAGCCAAGCTGTAGCCACGTTGGCTGGGCAACACGCGCCCCGCACGCG
CCACCGCCCGCCACCTACACCCGTCTACACCGGGCCGCCGAGCCGCTGAGCCGCTGCCACGAAAC
CGGACCCGTCGTCGTTCCGCGGGCCGGGCAATTGTCGGACGATACCCCTGACCACCGTCCGAGCG
ACTCCCAGCAGTTTAGCCTAGACACGTATTTTTCGCCAGCCACTTCGCATCCTACACGAAAAACA
CACCTCGAACCCCCGCTACCCGACAAGTAGAGCTGTTAATTGCCGCTGGAGCTGTTGTTGTTTCA
AGCGTACCTAGGCTCCTACTGTGTGTGACCCGCTCCCTCTGTCCC
Found at i:228460 original size:36 final size:35
Alignment explanation
Indices: 228414--228505 Score: 130
Period size: 36 Copynumber: 2.6 Consensus size: 35
228404 ACCCACTTTT
*
228414 TCCACCCACTTTTCCACCCAATTCTCCACCCAATTC
1 TCCACCCACTTTTCCACCCAATTCTCCACCC-ACTC
* *
228450 TCCACCCACTTTTCCACCCACTTCTCCGCCCACTC
1 TCCACCCACTTTTCCACCCAATTCTCCACCCACTC
*
228485 TCCACACACTTTTCCCACCCA
1 TCCACCCACTTTT-CCACCCA
228506 TAACCACCCT
Statistics
Matches: 51, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
35 15 0.29
36 36 0.71
ACGTcount: A:0.20, C:0.53, G:0.01, T:0.26
Consensus pattern (35 bp):
TCCACCCACTTTTCCACCCAATTCTCCACCCACTC
Left flanking sequence: Indices 227914 -- 228413
TGATACCGCATGGGGAACATTCCGTGCCTCGGTAGGAGGCCCAGTGCTCGTGTGGACACGTTCGG
AGGCGGCCCGCACGAGCGTGTCGGGGTTATGCACAGTGTTATCATGCTCCACAGCCGACGATGAC
TCACGGGTTACGGTGACTCGTATTGTATGTATGCAATTGCTGGAGTACCACGTATGTATCAATCG
AGTTGCCAACCTTCTGGGATTTATTTCTGTCACTTGAGCCAATAAGCCAGTAACGTACCTATCAA
TTTACCATTGTCTATGCGCTAAGCTATTACTTCTCCTACATATCTTTACACCCATTTTCCCACCC
ACAATTCCACCGAAATTCCCACCTACCTTTCCACCCACCTTTCCACTCACTTTCTCACCCACTTC
TCACCCACGTCCACCCACATCCCTACCCATTTCTACCCACTTTCTCACCCACTTTCTCACATTCC
TACTATTTTCCCACATTTCCATTCTCCCCCACACCACCCACTTTT
Right flanking sequence: Indices 228506 -- 229005
TAACCACCCTACCCACCCTAAACCCCTATCCCACCTTCACCTCTTAGTACCACATTGCTGGGCCC
TACATCGGAGCAACGCTCGGGGAACCCGGAACCGACCACCGCCATCACCTCTCACTTACCCCTGG
TTTTACTGCCGACACTGTAGCCAAGCTGTAGCCACGTTGGCTGGGCAACACGCGCCCCGCACGCG
CCACCGCCCGCCACCTACACCCGTCTACACCGGGCCGCCGAGCCGCTGAGCCGCTGCCACGAAAC
CGGACCCGTCGTCGTTCCGCGGGCCGGGCAATTGTCGGACGATACCCCTGACCACCGTCCGAGCG
ACTCCCAGCAGTTTAGCCTAGACACGTATTTTTCGCCAGCCACTTCGCATCCTACACGAAAAACA
CACCTCGAACCCCCGCTACCCGACAAGTAGAGCTGTTAATTGCCGCTGGAGCTGTTGTTGTTTCA
AGCGTACCTAGGCTCCTACTGTGTGTGACCCGCTCCCTCTGTCCC
Found at i:228540 original size:18 final size:20
Alignment explanation
Indices: 228497--228540 Score: 58
Period size: 18 Copynumber: 2.4 Consensus size: 20
228487 CACACACTTT
*
228497 TCCCACCCATAACCACCCTA
1 TCCCACCCATAAACACCCTA
228517 -CCCACCC-TAAAC-CCCTA
1 TCCCACCCATAAACACCCTA
228534 TCCCACC
1 TCCCACC
228541 TTCACCTCTT
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
17 5 0.23
18 10 0.45
19 7 0.32
ACGTcount: A:0.27, C:0.59, G:0.00, T:0.14
Consensus pattern (20 bp):
TCCCACCCATAAACACCCTA
Left flanking sequence: Indices 227997 -- 228496
TGTCGGGGTTATGCACAGTGTTATCATGCTCCACAGCCGACGATGACTCACGGGTTACGGTGACT
CGTATTGTATGTATGCAATTGCTGGAGTACCACGTATGTATCAATCGAGTTGCCAACCTTCTGGG
ATTTATTTCTGTCACTTGAGCCAATAAGCCAGTAACGTACCTATCAATTTACCATTGTCTATGCG
CTAAGCTATTACTTCTCCTACATATCTTTACACCCATTTTCCCACCCACAATTCCACCGAAATTC
CCACCTACCTTTCCACCCACCTTTCCACTCACTTTCTCACCCACTTCTCACCCACGTCCACCCAC
ATCCCTACCCATTTCTACCCACTTTCTCACCCACTTTCTCACATTCCTACTATTTTCCCACATTT
CCATTCTCCCCCACACCACCCACTTTTTCCACCCACTTTTCCACCCAATTCTCCACCCAATTCTC
CACCCACTTTTCCACCCACTTCTCCGCCCACTCTCCACACACTTT
Right flanking sequence: Indices 228541 -- 229040
TTCACCTCTTAGTACCACATTGCTGGGCCCTACATCGGAGCAACGCTCGGGGAACCCGGAACCGA
CCACCGCCATCACCTCTCACTTACCCCTGGTTTTACTGCCGACACTGTAGCCAAGCTGTAGCCAC
GTTGGCTGGGCAACACGCGCCCCGCACGCGCCACCGCCCGCCACCTACACCCGTCTACACCGGGC
CGCCGAGCCGCTGAGCCGCTGCCACGAAACCGGACCCGTCGTCGTTCCGCGGGCCGGGCAATTGT
CGGACGATACCCCTGACCACCGTCCGAGCGACTCCCAGCAGTTTAGCCTAGACACGTATTTTTCG
CCAGCCACTTCGCATCCTACACGAAAAACACACCTCGAACCCCCGCTACCCGACAAGTAGAGCTG
TTAATTGCCGCTGGAGCTGTTGTTGTTTCAAGCGTACCTAGGCTCCTACTGTGTGTGACCCGCTC
CCTCTGTCCCCGGGTTTTCTGTTTGCCACTGCATCTACGTGGCCG
Found at i:229450 original size:18 final size:18
Alignment explanation
Indices: 229427--229483 Score: 96
Period size: 18 Copynumber: 3.2 Consensus size: 18
229417 ACGGGGTGGA
229427 CAGGCTGGATACTCTGGT
1 CAGGCTGGATACTCTGGT
*
229445 CAGGCTGGATACTCTGGA
1 CAGGCTGGATACTCTGGT
*
229463 CTGGCTGGATACTCTGGT
1 CAGGCTGGATACTCTGGT
229481 CAG
1 CAG
229484 TCCGCCTATT
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 35 1.00
ACGTcount: A:0.18, C:0.23, G:0.33, T:0.26
Consensus pattern (18 bp):
CAGGCTGGATACTCTGGT
Left flanking sequence: Indices 228927 -- 229426
GCTGTTAATTGCCGCTGGAGCTGTTGTTGTTTCAAGCGTACCTAGGCTCCTACTGTGTGTGACCC
GCTCCCTCTGTCCCCGGGTTTTCTGTTTGCCACTGCATCTACGTGGCCGTTATCGCTGAGTTTGC
TCCCCAGCCGTTGCCCAGCTAATCCCCATCCTCGATGGACGCCCCCGCGGTAGAACCGTCGTATG
GCGGCGGCGCCTCGGGCCAGGCGCCGTCCCACGCCCACTCGGCCCAGGCCCAGCAAAAGAACCAA
CCCGCCACCGCCCGCATGCTCCGGCTGGTCAGCGGCACCCTACGCAGCCGCGAGGACCAGAGCCG
GGTGCTGGGCGGGTCTGGCGACGGGTCCAATGGCTCGTTGAAGCGCGAGTTGTTGCCGCCCGCGG
GCCAGGCGCCGCCGTGGGGCCCGGCCCGCCGCCCGTCGCAGCTGTCGCTGCAGTATCTGGGGGGG
AAGAACCCCCGGAGCATTGCTGAAGAAGAGGTGGAACGGGGTGGA
Right flanking sequence: Indices 229484 -- 229983
TCCGCCTATTCTGGTCAATCTGGTCAATCTGGCCATTCCGGTCAAAACCATTCCAGCCACTCTGG
CCAACCAAGCCAATCCCATGGTCATGCTGCTCACGGCCAGTCTAGCCACGGCCACGGCCAATCTG
GTTACCACGGCCAATCTGGTCATTCTGGCCAATCTGGCCATGGCCACGGCCATTCTGGCCACTCT
CATGCCCAGCCTCACCAGGGATCGCAACCTGTACCTGGCCAGGCTACCCCAGCCCAGCCCACTGG
CCAGCCTACCGGCCAGCCCACCGGCCAACCCACCCAGTCCACCACCCCCGGCAAGACCACCCCTG
GCCAGACCGACCCCTCCCAGCCCTCCAAGCGCCAGCAACAGTTCCACCGCAAGTCGATCGGCGAC
TGGGACTTCATCCGCACCATCGGCGCCGGGCTGATGGGCAAGGTCAAACTAGCATTCCACAAACA
ACTGCACGAGATCTGCGCCGTCAAAATCATCCCGCGCGCCGCCAA
Found at i:229497 original size:36 final size:36
Alignment explanation
Indices: 229423--229497 Score: 96
Period size: 36 Copynumber: 2.1 Consensus size: 36
229413 TGGAACGGGG
* *
229423 TGGACAGGCTGGATACTCTGGTCAGGCTGGATACTC
1 TGGACAGGCTGGATACTCTGGTCAGGCCGCATACTC
* * * *
229459 TGGACTGGCTGGATACTCTGGTCAGTCCGCCTATTC
1 TGGACAGGCTGGATACTCTGGTCAGGCCGCATACTC
229495 TGG
1 TGG
229498 TCAATCTGGT
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
36 33 1.00
ACGTcount: A:0.16, C:0.24, G:0.32, T:0.28
Consensus pattern (36 bp):
TGGACAGGCTGGATACTCTGGTCAGGCCGCATACTC
Left flanking sequence: Indices 228923 -- 229422
TAGAGCTGTTAATTGCCGCTGGAGCTGTTGTTGTTTCAAGCGTACCTAGGCTCCTACTGTGTGTG
ACCCGCTCCCTCTGTCCCCGGGTTTTCTGTTTGCCACTGCATCTACGTGGCCGTTATCGCTGAGT
TTGCTCCCCAGCCGTTGCCCAGCTAATCCCCATCCTCGATGGACGCCCCCGCGGTAGAACCGTCG
TATGGCGGCGGCGCCTCGGGCCAGGCGCCGTCCCACGCCCACTCGGCCCAGGCCCAGCAAAAGAA
CCAACCCGCCACCGCCCGCATGCTCCGGCTGGTCAGCGGCACCCTACGCAGCCGCGAGGACCAGA
GCCGGGTGCTGGGCGGGTCTGGCGACGGGTCCAATGGCTCGTTGAAGCGCGAGTTGTTGCCGCCC
GCGGGCCAGGCGCCGCCGTGGGGCCCGGCCCGCCGCCCGTCGCAGCTGTCGCTGCAGTATCTGGG
GGGGAAGAACCCCCGGAGCATTGCTGAAGAAGAGGTGGAACGGGG
Right flanking sequence: Indices 229498 -- 229997
TCAATCTGGTCAATCTGGCCATTCCGGTCAAAACCATTCCAGCCACTCTGGCCAACCAAGCCAAT
CCCATGGTCATGCTGCTCACGGCCAGTCTAGCCACGGCCACGGCCAATCTGGTTACCACGGCCAA
TCTGGTCATTCTGGCCAATCTGGCCATGGCCACGGCCATTCTGGCCACTCTCATGCCCAGCCTCA
CCAGGGATCGCAACCTGTACCTGGCCAGGCTACCCCAGCCCAGCCCACTGGCCAGCCTACCGGCC
AGCCCACCGGCCAACCCACCCAGTCCACCACCCCCGGCAAGACCACCCCTGGCCAGACCGACCCC
TCCCAGCCCTCCAAGCGCCAGCAACAGTTCCACCGCAAGTCGATCGGCGACTGGGACTTCATCCG
CACCATCGGCGCCGGGCTGATGGGCAAGGTCAAACTAGCATTCCACAAACAACTGCACGAGATCT
GCGCCGTCAAAATCATCCCGCGCGCCGCCAAGCTCTACCAGCGGG
Found at i:229749 original size:12 final size:12
Alignment explanation
Indices: 229732--229777 Score: 65
Period size: 12 Copynumber: 3.8 Consensus size: 12
229722 CTACCCCAGC
*
229732 CCAGCCCACTGG
1 CCAGCCCACCGG
*
229744 CCAGCCTACCGG
1 CCAGCCCACCGG
229756 CCAGCCCACCGG
1 CCAGCCCACCGG
*
229768 CCAACCCACC
1 CCAGCCCACC
229778 CAGTCCACCA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
12 30 1.00
ACGTcount: A:0.20, C:0.57, G:0.20, T:0.04
Consensus pattern (12 bp):
CCAGCCCACCGG
Left flanking sequence: Indices 229232 -- 229731
AGCCGCGAGGACCAGAGCCGGGTGCTGGGCGGGTCTGGCGACGGGTCCAATGGCTCGTTGAAGCG
CGAGTTGTTGCCGCCCGCGGGCCAGGCGCCGCCGTGGGGCCCGGCCCGCCGCCCGTCGCAGCTGT
CGCTGCAGTATCTGGGGGGGAAGAACCCCCGGAGCATTGCTGAAGAAGAGGTGGAACGGGGTGGA
CAGGCTGGATACTCTGGTCAGGCTGGATACTCTGGACTGGCTGGATACTCTGGTCAGTCCGCCTA
TTCTGGTCAATCTGGTCAATCTGGCCATTCCGGTCAAAACCATTCCAGCCACTCTGGCCAACCAA
GCCAATCCCATGGTCATGCTGCTCACGGCCAGTCTAGCCACGGCCACGGCCAATCTGGTTACCAC
GGCCAATCTGGTCATTCTGGCCAATCTGGCCATGGCCACGGCCATTCTGGCCACTCTCATGCCCA
GCCTCACCAGGGATCGCAACCTGTACCTGGCCAGGCTACCCCAGC
Right flanking sequence: Indices 229778 -- 230277
CAGTCCACCACCCCCGGCAAGACCACCCCTGGCCAGACCGACCCCTCCCAGCCCTCCAAGCGCCA
GCAACAGTTCCACCGCAAGTCGATCGGCGACTGGGACTTCATCCGCACCATCGGCGCCGGGCTGA
TGGGCAAGGTCAAACTAGCATTCCACAAACAACTGCACGAGATCTGCGCCGTCAAAATCATCCCG
CGCGCCGCCAAGCTCTACCAGCGGGCCCACGCCGCCGACCCGCCGCCCGCGCTGCCGCAGGAGGC
GATGCAGCGCCAGAAGGAGTTCGAGAAGGAGATGGCCCGCGACAAACGCACCATCCGCGAGGGCG
CGCTCGGGCGGCTCCTCTTCCACCCGTTCATCTGCCGGTTGTACGAGATGGTACCGATGACCAAC
CACTACTACATGTTGTTTGAGTACGTCGAGGGCGGGCAGATGCTCGACTACATCGTCGCCCACGG
ACTGCTCAAGGAAAAGCACGCCCGCAAGTTTGCCCGCGGCATCGC
Found at i:229823 original size:16 final size:15
Alignment explanation
Indices: 229784--229823 Score: 53
Period size: 15 Copynumber: 2.6 Consensus size: 15
229774 CACCCAGTCC
*
229784 ACCACCCCCGGCAAG
1 ACCACCCCTGGCAAG
*
229799 ACCACCCCTGGCCAG
1 ACCACCCCTGGCAAG
229814 ACCGACCCCT
1 ACC-ACCCCT
229824 CCCAGCCCTC
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 16 0.73
16 6 0.27
ACGTcount: A:0.23, C:0.55, G:0.17, T:0.05
Consensus pattern (15 bp):
ACCACCCCTGGCAAG
Left flanking sequence: Indices 229284 -- 229783
GCTCGTTGAAGCGCGAGTTGTTGCCGCCCGCGGGCCAGGCGCCGCCGTGGGGCCCGGCCCGCCGC
CCGTCGCAGCTGTCGCTGCAGTATCTGGGGGGGAAGAACCCCCGGAGCATTGCTGAAGAAGAGGT
GGAACGGGGTGGACAGGCTGGATACTCTGGTCAGGCTGGATACTCTGGACTGGCTGGATACTCTG
GTCAGTCCGCCTATTCTGGTCAATCTGGTCAATCTGGCCATTCCGGTCAAAACCATTCCAGCCAC
TCTGGCCAACCAAGCCAATCCCATGGTCATGCTGCTCACGGCCAGTCTAGCCACGGCCACGGCCA
ATCTGGTTACCACGGCCAATCTGGTCATTCTGGCCAATCTGGCCATGGCCACGGCCATTCTGGCC
ACTCTCATGCCCAGCCTCACCAGGGATCGCAACCTGTACCTGGCCAGGCTACCCCAGCCCAGCCC
ACTGGCCAGCCTACCGGCCAGCCCACCGGCCAACCCACCCAGTCC
Right flanking sequence: Indices 229824 -- 230323
CCCAGCCCTCCAAGCGCCAGCAACAGTTCCACCGCAAGTCGATCGGCGACTGGGACTTCATCCGC
ACCATCGGCGCCGGGCTGATGGGCAAGGTCAAACTAGCATTCCACAAACAACTGCACGAGATCTG
CGCCGTCAAAATCATCCCGCGCGCCGCCAAGCTCTACCAGCGGGCCCACGCCGCCGACCCGCCGC
CCGCGCTGCCGCAGGAGGCGATGCAGCGCCAGAAGGAGTTCGAGAAGGAGATGGCCCGCGACAAA
CGCACCATCCGCGAGGGCGCGCTCGGGCGGCTCCTCTTCCACCCGTTCATCTGCCGGTTGTACGA
GATGGTACCGATGACCAACCACTACTACATGTTGTTTGAGTACGTCGAGGGCGGGCAGATGCTCG
ACTACATCGTCGCCCACGGACTGCTCAAGGAAAAGCACGCCCGCAAGTTTGCCCGCGGCATCGCG
CTGGCGCTCGAGTACTGCCACCGCAACAACGTGGTGCACCGCGAC
Found at i:231077 original size:18 final size:18
Alignment explanation
Indices: 231054--231092 Score: 69
Period size: 18 Copynumber: 2.2 Consensus size: 18
231044 CGCGCGCAGA
*
231054 AGGAGAAGGCGGCGGTGG
1 AGGAGAAGGCGGCGGCGG
231072 AGGAGAAGGCGGCGGCGG
1 AGGAGAAGGCGGCGGCGG
231090 AGG
1 AGG
231093 CCAAGCCGGC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.23, C:0.13, G:0.62, T:0.03
Consensus pattern (18 bp):
AGGAGAAGGCGGCGGCGG
Left flanking sequence: Indices 230554 -- 231053
CCAGCTGGTGCTGGTGCTCCACGAGAAGATCAAAAAGGGCCACGTCGAGTACCCGGCGTTCTTGC
TGCGCGAGTGTGTGCTGTTGTTGCTGCGGATGCTTGTGGTGGACCCTGCCAAGCGCGCGTCGCTC
TACGAGGTGATGAACCACCCGTGGATGAACAAGGGCTACGAGCACAAGGTGCTGCTGTACTTGCC
CAAGCGCACGCCGTTGCGGTTGCCGCTCGACCCCGACATCGTCAAGACGATTGCCCTGTTTGACC
TCGGGCTGGTGGCGCTGATCACCGACGAGCTCACCGCGGTGTTGACGCTGGTGGAGTACCAGATG
AGCTGCGAGAACTGGCAGAAGCTTGCGGACCAGGGCCGCGACTACGCGCTGGCGCTGAACGCCCA
CCTCTTGCCCGACCCCACCGGCGGGTTCCACCCGTTGATTCTGATCTACTTTTTGGTGGACGAGA
TGAAGAAGCGCAAAAAGGCCAAGGAGGATGCCATTCGCGCGCAGA
Right flanking sequence: Indices 231093 -- 231592
CCAAGCCGGCGATTACTACGCTGCCGCCGGAGGCGGTGGAGGCGGAGGCGGCGTCACGGGCTGGA
GCCGTTGGTTTGGTTGCCGCAGCGGCCGGTTCTGTGCCCGGCCCGGCCACCGGAGTGCCTGGTTC
TGTGCCCGGCGCCATTCCTGGTTCTGTGCCCGGACCCATTCCCACCGGGCCTACTGGGCCTACTG
GACCTGCTGGATCCATTCCCACTGGTTCCACGGGACCCACGGGACCCATTTCCACCGGTCCTGGA
CCCATTCCCGGCCCCATCCCCACCAACCGCGACCCCATTCCCACCCGCGAACCCGTGGTGGCCAA
CACCGCCAACCCAGCCCACCTCGCCGCCACCCCACCGCTCGCGGGCCCGGTGCGGCTGCAGACGC
TCACCCGCAAGCCCCCCGTGGGCCTGCCCGAGCTGGTGGCCACCCCCACCATGGTGCACACGCCT
CGCGCCCACCCGCTGCCGTCGGCCCGCTCGCCCGCCTCGCCCGAC
Found at i:231242 original size:24 final size:24
Alignment explanation
Indices: 231215--231264 Score: 84
Period size: 24 Copynumber: 2.1 Consensus size: 24
231205 CACCGGAGTG
231215 CCTGGTTCTGTGCCCGG-CGCCATT
1 CCTGGTTCTGTGCCCGGAC-CCATT
231239 CCTGGTTCTGTGCCCGGACCCATT
1 CCTGGTTCTGTGCCCGGACCCATT
231263 CC
1 CC
231265 CACCGGGCCT
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
24 24 0.96
25 1 0.04
ACGTcount: A:0.06, C:0.40, G:0.26, T:0.28
Consensus pattern (24 bp):
CCTGGTTCTGTGCCCGGACCCATT
Left flanking sequence: Indices 230715 -- 231214
AGGGCTACGAGCACAAGGTGCTGCTGTACTTGCCCAAGCGCACGCCGTTGCGGTTGCCGCTCGAC
CCCGACATCGTCAAGACGATTGCCCTGTTTGACCTCGGGCTGGTGGCGCTGATCACCGACGAGCT
CACCGCGGTGTTGACGCTGGTGGAGTACCAGATGAGCTGCGAGAACTGGCAGAAGCTTGCGGACC
AGGGCCGCGACTACGCGCTGGCGCTGAACGCCCACCTCTTGCCCGACCCCACCGGCGGGTTCCAC
CCGTTGATTCTGATCTACTTTTTGGTGGACGAGATGAAGAAGCGCAAAAAGGCCAAGGAGGATGC
CATTCGCGCGCAGAAGGAGAAGGCGGCGGTGGAGGAGAAGGCGGCGGCGGAGGCCAAGCCGGCGA
TTACTACGCTGCCGCCGGAGGCGGTGGAGGCGGAGGCGGCGTCACGGGCTGGAGCCGTTGGTTTG
GTTGCCGCAGCGGCCGGTTCTGTGCCCGGCCCGGCCACCGGAGTG
Right flanking sequence: Indices 231265 -- 231764
CACCGGGCCTACTGGGCCTACTGGACCTGCTGGATCCATTCCCACTGGTTCCACGGGACCCACGG
GACCCATTTCCACCGGTCCTGGACCCATTCCCGGCCCCATCCCCACCAACCGCGACCCCATTCCC
ACCCGCGAACCCGTGGTGGCCAACACCGCCAACCCAGCCCACCTCGCCGCCACCCCACCGCTCGC
GGGCCCGGTGCGGCTGCAGACGCTCACCCGCAAGCCCCCCGTGGGCCTGCCCGAGCTGGTGGCCA
CCCCCACCATGGTGCACACGCCTCGCGCCCACCCGCTGCCGTCGGCCCGCTCGCCCGCCTCGCCC
GACGACGTGCGGTCGCAGCGCACCGCCCACCGCCACACCGCCATCGTCGGCAACTCGCCCGAGCC
CGGCGAGGACCCGGGCAAGAACGACATCAACGTCATCACCCTGCCCGGCCCAGACACCCCGAGCA
AACGCACCACGGTGCGGCTGGGCCAGATCCTGGGCTCGCGGCTGC
Found at i:231945 original size:21 final size:21
Alignment explanation
Indices: 231920--231971 Score: 95
Period size: 21 Copynumber: 2.5 Consensus size: 21
231910 GATGGCGGAG
231920 CCGGTGCCGCGGTTCAACGAC
1 CCGGTGCCGCGGTTCAACGAC
231941 CCGGTGCCGCGGTTCAACGAC
1 CCGGTGCCGCGGTTCAACGAC
*
231962 CCAGTGCCGC
1 CCGGTGCCGC
231972 CCGAGGAGCC
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.13, C:0.40, G:0.33, T:0.13
Consensus pattern (21 bp):
CCGGTGCCGCGGTTCAACGAC
Left flanking sequence: Indices 231420 -- 231919
CCGCCAACCCAGCCCACCTCGCCGCCACCCCACCGCTCGCGGGCCCGGTGCGGCTGCAGACGCTC
ACCCGCAAGCCCCCCGTGGGCCTGCCCGAGCTGGTGGCCACCCCCACCATGGTGCACACGCCTCG
CGCCCACCCGCTGCCGTCGGCCCGCTCGCCCGCCTCGCCCGACGACGTGCGGTCGCAGCGCACCG
CCCACCGCCACACCGCCATCGTCGGCAACTCGCCCGAGCCCGGCGAGGACCCGGGCAAGAACGAC
ATCAACGTCATCACCCTGCCCGGCCCAGACACCCCGAGCAAACGCACCACGGTGCGGCTGGGCCA
GATCCTGGGCTCGCGGCTGCTGCCGCTGCTGGGCCTCGACGACGTGTTCCGCGCGTTGGACGCCA
ACCCGGAGATCGCACCGTTGCTGTTCCCGGAGCCCGTGCACAACCCGGGCGACTACGGGCCCGAC
TACGACTACGGCGCCGCACCGCAGTTGGCGCTGCCGATGGCGGAG
Right flanking sequence: Indices 231972 -- 232471
CCGAGGAGCCGCTGCTGCCCGCCAGAGGCGGCATCAACAACTTGTTGCGGCGGTTGTCGAGCAAG
CGGCGGCCCACACTGCCCACAGCGGACGGCTCGCCACGCAAGGACCCGCTCGTGCGCCGCGGCGT
GCTGATGAAGGTGACGGCCAAGGAGAAAATCAACCCGCCCGCAGACAAGTGGCGCCAGGGCCCGC
GCAAGCTGGGCCACCACCGGTCGCACCTGCTGAAGGGCGCCCACGGGTTCGTCCCCGTGGAGTAC
TTGCCGCCGTTGCCCAACATCCTGACGCTGTCGCACGGGCTGGGGTCGTCGGCAGCCAACCTGGC
GTCGCCCAGCTACGTGGCCACTCCCGGCTACGGCAACAGCCTCCAGGTGCCCGGCGTGGCGCCGC
TGGCGCTGTTGCGGCGCAAGTTCCACCCCACCGCCCGGGCCAAGTCCGTGGGCGGGCACATCCGC
AAGGACCTGTACGGGCTGCGGGTGCCGCGCGAGGGGTTGGCGGGC
Found at i:233697 original size:15 final size:15
Alignment explanation
Indices: 233622--233715 Score: 77
Period size: 15 Copynumber: 6.3 Consensus size: 15
233612 TGGGGGGGGG
*
233622 TTGGAAGCGGAGAGG
1 TTGGAAGCGGAGAGA
*
233637 TTGAAAGCGGAGAGA
1 TTGGAAGCGGAGAGA
*
233652 TTGGGTAGC-GAG-G-
1 TT-GGAAGCGGAGAGA
* * *
233665 TTGGGTAGCGGTGTGA
1 TT-GGAAGCGGAGAGA
233681 TTGGAAGCGGAGAGA
1 TTGGAAGCGGAGAGA
*
233696 TTGGATAGCGGAGAGG
1 TTGGA-AGCGGAGAGA
233712 TTGG
1 TTGG
233716 GTAGCGGTGT
Statistics
Matches: 65, Mismatches: 9, Indels: 9
0.78 0.11 0.11
Matches are distributed among these distances:
13 9 0.14
14 3 0.05
15 34 0.52
16 19 0.29
ACGTcount: A:0.24, C:0.06, G:0.49, T:0.20
Consensus pattern (15 bp):
TTGGAAGCGGAGAGA
Left flanking sequence: Indices 233122 -- 233621
CAACGGCGACAACACCCAGATGCCGCCGCTGACGCCCGCAGCCGCCAAGGCGATGCGTGGGTTTG
CCGACGACGTCGACCTCACCGACGACTCCGATGCGTTCCGTGCCCACCTCGCGCCGGTGCCGGTG
ATCGACGACTCCATCGACCTGATCAACGGGCTCGCGGTGCAGGGCGGGTCCGACATGTTGATCTC
GTCGCGGATCGAGCAGCGGGCGCGCCACCAGCACCTGTCGCTGGTGCTGTCGACGCTGAAGCAGC
CGGTGCGGCGCACCCCCGTCAACTTCCAGATCGAGATCGTCAAGGTGCCCATTCTCAACTTGCAC
GCGCTCATTCTCAAAAAGATTGTCGGCAACACCTGGAACTACAAGCACTTGGCCGACCGCATCAT
CGGCGACTTGAACTTGTAGCGTTTTTGTTTAGTTTTTATATCGGGATATGGTCGTGTACTGGTGA
CTACCTATTGAATGAACGAATTATCAGGAGAATAGTGGGGGGGGG
Right flanking sequence: Indices 233716 -- 234215
GTAGCGGTGTGATTAGCGAGTTGGCTAGTTCAGTAGGCATCAGCGAGCATCAGCGAGCATCAGCG
AGGCATCAGCGAGCATTCGATAAGCGAGGCTGAGATCGAGATTCGATTAGCGAGGCTTTAGCGAG
GCTAACGCGGGCTTATTGCGCAAACGGCTGGTGCAACAAGTCCTGGAACCACCGCTCGGGCCGCT
TGCGGCAGTTGCAGCAGTAGTGTTTGCACATGGTGCACTTGTCGACGTGGTCGCCGCACTGCGGG
CAGTGGTGCCCGGTCTGGATGTGGTAGGTGCAGCACTCGCAAATCGGGCACTGGGTCATTGGTGC
CAGGAGGCTGGTGGCGCATTATATAGTGGGCAACGCGTCGGACAGACACGAGCGGGGAAGATGAG
TGGTGGGGTACGTCAATGTTACCCATTGAGCGTGCTGTCACTGGTGCGTTACCGAGCCGACACTT
TCCCCCTGGCGACATTTTTAGGCAGTGACAATAATTCAAGGAGAT
Found at i:233727 original size:47 final size:44
Alignment explanation
Indices: 233641--233729 Score: 142
Period size: 47 Copynumber: 2.0 Consensus size: 44
233631 GAGAGGTTGA
*
233641 AAGCGGAGAGATTGGGTAGCGAGGTTGGGTAGCGGTGTGATTGG
1 AAGCGGAGAGATTGGATAGCGAGGTTGGGTAGCGGTGTGATTGG
233685 AAGCGGAGAGATTGGATAGCGGAGAGGTTGGGTAGCGGTGTGATT
1 AAGCGGAGAGATTGGATAGC---GAGGTTGGGTAGCGGTGTGATT
233730 AGCGAGTTGG
Statistics
Matches: 41, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
44 19 0.46
47 22 0.54
ACGTcount: A:0.22, C:0.07, G:0.48, T:0.22
Consensus pattern (44 bp):
AAGCGGAGAGATTGGATAGCGAGGTTGGGTAGCGGTGTGATTGG
Left flanking sequence: Indices 233141 -- 233640
ATGCCGCCGCTGACGCCCGCAGCCGCCAAGGCGATGCGTGGGTTTGCCGACGACGTCGACCTCAC
CGACGACTCCGATGCGTTCCGTGCCCACCTCGCGCCGGTGCCGGTGATCGACGACTCCATCGACC
TGATCAACGGGCTCGCGGTGCAGGGCGGGTCCGACATGTTGATCTCGTCGCGGATCGAGCAGCGG
GCGCGCCACCAGCACCTGTCGCTGGTGCTGTCGACGCTGAAGCAGCCGGTGCGGCGCACCCCCGT
CAACTTCCAGATCGAGATCGTCAAGGTGCCCATTCTCAACTTGCACGCGCTCATTCTCAAAAAGA
TTGTCGGCAACACCTGGAACTACAAGCACTTGGCCGACCGCATCATCGGCGACTTGAACTTGTAG
CGTTTTTGTTTAGTTTTTATATCGGGATATGGTCGTGTACTGGTGACTACCTATTGAATGAACGA
ATTATCAGGAGAATAGTGGGGGGGGGTTGGAAGCGGAGAGGTTGA
Right flanking sequence: Indices 233730 -- 234229
AGCGAGTTGGCTAGTTCAGTAGGCATCAGCGAGCATCAGCGAGCATCAGCGAGGCATCAGCGAGC
ATTCGATAAGCGAGGCTGAGATCGAGATTCGATTAGCGAGGCTTTAGCGAGGCTAACGCGGGCTT
ATTGCGCAAACGGCTGGTGCAACAAGTCCTGGAACCACCGCTCGGGCCGCTTGCGGCAGTTGCAG
CAGTAGTGTTTGCACATGGTGCACTTGTCGACGTGGTCGCCGCACTGCGGGCAGTGGTGCCCGGT
CTGGATGTGGTAGGTGCAGCACTCGCAAATCGGGCACTGGGTCATTGGTGCCAGGAGGCTGGTGG
CGCATTATATAGTGGGCAACGCGTCGGACAGACACGAGCGGGGAAGATGAGTGGTGGGGTACGTC
AATGTTACCCATTGAGCGTGCTGTCACTGGTGCGTTACCGAGCCGACACTTTCCCCCTGGCGACA
TTTTTAGGCAGTGACAATAATTCAAGGAGATGAGAGATTCCGGGA
Found at i:233765 original size:10 final size:10
Alignment explanation
Indices: 233752--233796 Score: 81
Period size: 10 Copynumber: 4.4 Consensus size: 10
233742 AGTTCAGTAG
233752 GCATCAGCGA
1 GCATCAGCGA
233762 GCATCAGCGA
1 GCATCAGCGA
233772 GCATCAGCGA
1 GCATCAGCGA
233782 GGCATCAGCGA
1 -GCATCAGCGA
233793 GCAT
1 GCAT
233797 TCGATAAGCG
Statistics
Matches: 34, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
10 24 0.71
11 10 0.29
ACGTcount: A:0.29, C:0.29, G:0.31, T:0.11
Consensus pattern (10 bp):
GCATCAGCGA
Left flanking sequence: Indices 233252 -- 233751
ATCGACGACTCCATCGACCTGATCAACGGGCTCGCGGTGCAGGGCGGGTCCGACATGTTGATCTC
GTCGCGGATCGAGCAGCGGGCGCGCCACCAGCACCTGTCGCTGGTGCTGTCGACGCTGAAGCAGC
CGGTGCGGCGCACCCCCGTCAACTTCCAGATCGAGATCGTCAAGGTGCCCATTCTCAACTTGCAC
GCGCTCATTCTCAAAAAGATTGTCGGCAACACCTGGAACTACAAGCACTTGGCCGACCGCATCAT
CGGCGACTTGAACTTGTAGCGTTTTTGTTTAGTTTTTATATCGGGATATGGTCGTGTACTGGTGA
CTACCTATTGAATGAACGAATTATCAGGAGAATAGTGGGGGGGGGTTGGAAGCGGAGAGGTTGAA
AGCGGAGAGATTGGGTAGCGAGGTTGGGTAGCGGTGTGATTGGAAGCGGAGAGATTGGATAGCGG
AGAGGTTGGGTAGCGGTGTGATTAGCGAGTTGGCTAGTTCAGTAG
Right flanking sequence: Indices 233797 -- 234296
TCGATAAGCGAGGCTGAGATCGAGATTCGATTAGCGAGGCTTTAGCGAGGCTAACGCGGGCTTAT
TGCGCAAACGGCTGGTGCAACAAGTCCTGGAACCACCGCTCGGGCCGCTTGCGGCAGTTGCAGCA
GTAGTGTTTGCACATGGTGCACTTGTCGACGTGGTCGCCGCACTGCGGGCAGTGGTGCCCGGTCT
GGATGTGGTAGGTGCAGCACTCGCAAATCGGGCACTGGGTCATTGGTGCCAGGAGGCTGGTGGCG
CATTATATAGTGGGCAACGCGTCGGACAGACACGAGCGGGGAAGATGAGTGGTGGGGTACGTCAA
TGTTACCCATTGAGCGTGCTGTCACTGGTGCGTTACCGAGCCGACACTTTCCCCCTGGCGACATT
TTTAGGCAGTGACAATAATTCAAGGAGATGAGAGATTCCGGGAAATAGCTAAGGAGATATAAGGA
GACTCAAGAGATATAAGGAGACTCGGAAATATCCCAAGAGATATC
Found at i:233788 original size:21 final size:20
Alignment explanation
Indices: 233752--233796 Score: 81
Period size: 21 Copynumber: 2.2 Consensus size: 20
233742 AGTTCAGTAG
233752 GCATCAGCGAGCATCAGCGA
1 GCATCAGCGAGCATCAGCGA
233772 GCATCAGCGAGGCATCAGCGA
1 GCATCAGCGA-GCATCAGCGA
233793 GCAT
1 GCAT
233797 TCGATAAGCG
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
20 10 0.42
21 14 0.58
ACGTcount: A:0.29, C:0.29, G:0.31, T:0.11
Consensus pattern (20 bp):
GCATCAGCGAGCATCAGCGA
Left flanking sequence: Indices 233252 -- 233751
ATCGACGACTCCATCGACCTGATCAACGGGCTCGCGGTGCAGGGCGGGTCCGACATGTTGATCTC
GTCGCGGATCGAGCAGCGGGCGCGCCACCAGCACCTGTCGCTGGTGCTGTCGACGCTGAAGCAGC
CGGTGCGGCGCACCCCCGTCAACTTCCAGATCGAGATCGTCAAGGTGCCCATTCTCAACTTGCAC
GCGCTCATTCTCAAAAAGATTGTCGGCAACACCTGGAACTACAAGCACTTGGCCGACCGCATCAT
CGGCGACTTGAACTTGTAGCGTTTTTGTTTAGTTTTTATATCGGGATATGGTCGTGTACTGGTGA
CTACCTATTGAATGAACGAATTATCAGGAGAATAGTGGGGGGGGGTTGGAAGCGGAGAGGTTGAA
AGCGGAGAGATTGGGTAGCGAGGTTGGGTAGCGGTGTGATTGGAAGCGGAGAGATTGGATAGCGG
AGAGGTTGGGTAGCGGTGTGATTAGCGAGTTGGCTAGTTCAGTAG
Right flanking sequence: Indices 233797 -- 234296
TCGATAAGCGAGGCTGAGATCGAGATTCGATTAGCGAGGCTTTAGCGAGGCTAACGCGGGCTTAT
TGCGCAAACGGCTGGTGCAACAAGTCCTGGAACCACCGCTCGGGCCGCTTGCGGCAGTTGCAGCA
GTAGTGTTTGCACATGGTGCACTTGTCGACGTGGTCGCCGCACTGCGGGCAGTGGTGCCCGGTCT
GGATGTGGTAGGTGCAGCACTCGCAAATCGGGCACTGGGTCATTGGTGCCAGGAGGCTGGTGGCG
CATTATATAGTGGGCAACGCGTCGGACAGACACGAGCGGGGAAGATGAGTGGTGGGGTACGTCAA
TGTTACCCATTGAGCGTGCTGTCACTGGTGCGTTACCGAGCCGACACTTTCCCCCTGGCGACATT
TTTAGGCAGTGACAATAATTCAAGGAGATGAGAGATTCCGGGAAATAGCTAAGGAGATATAAGGA
GACTCAAGAGATATAAGGAGACTCGGAAATATCCCAAGAGATATC
Found at i:234471 original size:18 final size:18
Alignment explanation
Indices: 234448--234527 Score: 85
Period size: 18 Copynumber: 4.6 Consensus size: 18
234438 AGATATTTAG
234448 GTAGACCTTGAAATCTAT
1 GTAGACCTTGAAATCTAT
* * *
234466 GTAGACCTTGATATATTT
1 GTAGACCTTGAAATCTAT
* * *
234484 ATAAACC-TGATATC--T
1 GTAGACCTTGAAATCTAT
234499 GTAGACCTTGAAATCTAT
1 GTAGACCTTGAAATCTAT
234517 GTAGACCTTGA
1 GTAGACCTTGA
234528 TATATCTATA
Statistics
Matches: 50, Mismatches: 9, Indels: 6
0.77 0.14 0.09
Matches are distributed among these distances:
15 6 0.12
16 6 0.12
17 6 0.12
18 32 0.64
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.35
Consensus pattern (18 bp):
GTAGACCTTGAAATCTAT
Left flanking sequence: Indices 233948 -- 234447
CTTGTCGACGTGGTCGCCGCACTGCGGGCAGTGGTGCCCGGTCTGGATGTGGTAGGTGCAGCACT
CGCAAATCGGGCACTGGGTCATTGGTGCCAGGAGGCTGGTGGCGCATTATATAGTGGGCAACGCG
TCGGACAGACACGAGCGGGGAAGATGAGTGGTGGGGTACGTCAATGTTACCCATTGAGCGTGCTG
TCACTGGTGCGTTACCGAGCCGACACTTTCCCCCTGGCGACATTTTTAGGCAGTGACAATAATTC
AAGGAGATGAGAGATTCCGGGAAATAGCTAAGGAGATATAAGGAGACTCAAGAGATATAAGGAGA
CTCGGAAATATCCCAAGAGATATCTAGACTTCAGAAACGTTTCAGGAATATTCAGAGATTTTGAA
AAAGATTGAGAGATATCCAGAGACTTGGTAGAAACTATAAGATTTCCAGAGACTCTGAAAATTTA
GTTGATATTTAGATATCGAGACTCACAGAATACTAAGATATTTAG
Right flanking sequence: Indices 234528 -- 235027
TATATCTATAGACCTAACATCCGTAGACCTTGACATCAACGTAGACCTTGACATTTACGCAATAC
GAGCGTTTAAACCTTAACTGTCGCACCCTACAATCGCACCCCATACAATCGCTCCCCCATACTTA
CTAAGCAGTTTATTGCTACATGCGTACCCTACATCATGCGTCGTCCTGGGTGGGGTTTTTCGCGT
AGAAGAAGTTGACCCCAAGCAACTTGGAACCAGCCCCGTTCTTGGCAATCCAGTCGCGAACGCCC
AGACCAGCGATCCCCGTGCCCCAGTTGGGCCGGTCCTTCGGGGCCGCCTCGGAGCCAAACTGGGC
GCCCGCGGCCTGCTTGTACAACAAAAACACATACCGGTGCTTCCCCGTGTTGGGCGGCGGCGCCG
GACCCTCGTAGGGCACCAATTGTAGCCCCAGACCCGGGTCGATGGTGTGGATGACGTCATCCTCC
AGCTTGGGAGGCGACAACTTGATGTCGGCCGCCACCCAGTGGCAG
Found at i:234517 original size:51 final size:51
Alignment explanation
Indices: 234448--234578 Score: 190
Period size: 51 Copynumber: 2.6 Consensus size: 51
234438 AGATATTTAG
* * * *
234448 GTAGACCTTGAAATCTATGTAGACCTTGATATATTTATAAACCTGATATCT
1 GTAGACCTTGAAATCTATGTAGACCTTGATATATCTATAAACCTAACATCC
*
234499 GTAGACCTTGAAATCTATGTAGACCTTGATATATCTATAGACCTAACATCC
1 GTAGACCTTGAAATCTATGTAGACCTTGATATATCTATAAACCTAACATCC
* * *
234550 GTAGACCTTGACATCAACGTAGACCTTGA
1 GTAGACCTTGAAATCTATGTAGACCTTGA
234579 CATTTACGCA
Statistics
Matches: 72, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
51 72 1.00
ACGTcount: A:0.33, C:0.20, G:0.15, T:0.32
Consensus pattern (51 bp):
GTAGACCTTGAAATCTATGTAGACCTTGATATATCTATAAACCTAACATCC
Left flanking sequence: Indices 233948 -- 234447
CTTGTCGACGTGGTCGCCGCACTGCGGGCAGTGGTGCCCGGTCTGGATGTGGTAGGTGCAGCACT
CGCAAATCGGGCACTGGGTCATTGGTGCCAGGAGGCTGGTGGCGCATTATATAGTGGGCAACGCG
TCGGACAGACACGAGCGGGGAAGATGAGTGGTGGGGTACGTCAATGTTACCCATTGAGCGTGCTG
TCACTGGTGCGTTACCGAGCCGACACTTTCCCCCTGGCGACATTTTTAGGCAGTGACAATAATTC
AAGGAGATGAGAGATTCCGGGAAATAGCTAAGGAGATATAAGGAGACTCAAGAGATATAAGGAGA
CTCGGAAATATCCCAAGAGATATCTAGACTTCAGAAACGTTTCAGGAATATTCAGAGATTTTGAA
AAAGATTGAGAGATATCCAGAGACTTGGTAGAAACTATAAGATTTCCAGAGACTCTGAAAATTTA
GTTGATATTTAGATATCGAGACTCACAGAATACTAAGATATTTAG
Right flanking sequence: Indices 234579 -- 235078
CATTTACGCAATACGAGCGTTTAAACCTTAACTGTCGCACCCTACAATCGCACCCCATACAATCG
CTCCCCCATACTTACTAAGCAGTTTATTGCTACATGCGTACCCTACATCATGCGTCGTCCTGGGT
GGGGTTTTTCGCGTAGAAGAAGTTGACCCCAAGCAACTTGGAACCAGCCCCGTTCTTGGCAATCC
AGTCGCGAACGCCCAGACCAGCGATCCCCGTGCCCCAGTTGGGCCGGTCCTTCGGGGCCGCCTCG
GAGCCAAACTGGGCGCCCGCGGCCTGCTTGTACAACAAAAACACATACCGGTGCTTCCCCGTGTT
GGGCGGCGGCGCCGGACCCTCGTAGGGCACCAATTGTAGCCCCAGACCCGGGTCGATGGTGTGGA
TGACGTCATCCTCCAGCTTGGGAGGCGACAACTTGATGTCGGCCGCCACCCAGTGGCAGTACTCC
AGCCACTTGTGGTCTTGGTTCGAGGGGGCGTCGGGGTCGGTGAAC
Found at i:234539 original size:18 final size:17
Alignment explanation
Indices: 234449--234542 Score: 79
Period size: 18 Copynumber: 5.4 Consensus size: 17
234439 GATATTTAGG
234449 TAGACCTTGAA-ATCTA
1 TAGACCTTGAATATCTA
*
234465 TGTAGACCTTGATATATTTA
1 --TAGACCTTGA-ATATCTA
* *
234485 TAAACC-TG-ATATCTG
1 TAGACCTTGAATATCTA
234500 TAGACCTTGAA-ATCTA
1 TAGACCTTGAATATCTA
234516 TGTAGACCTTGATATATCTA
1 --TAGACCTTGA-ATATCTA
234536 TAGACCT
1 TAGACCT
234543 AACATCCGTA
Statistics
Matches: 62, Mismatches: 6, Indels: 16
0.74 0.07 0.19
Matches are distributed among these distances:
15 10 0.16
16 6 0.10
17 3 0.05
18 32 0.52
19 2 0.03
20 9 0.15
ACGTcount: A:0.33, C:0.17, G:0.14, T:0.36
Consensus pattern (17 bp):
TAGACCTTGAATATCTA
Left flanking sequence: Indices 233949 -- 234448
TTGTCGACGTGGTCGCCGCACTGCGGGCAGTGGTGCCCGGTCTGGATGTGGTAGGTGCAGCACTC
GCAAATCGGGCACTGGGTCATTGGTGCCAGGAGGCTGGTGGCGCATTATATAGTGGGCAACGCGT
CGGACAGACACGAGCGGGGAAGATGAGTGGTGGGGTACGTCAATGTTACCCATTGAGCGTGCTGT
CACTGGTGCGTTACCGAGCCGACACTTTCCCCCTGGCGACATTTTTAGGCAGTGACAATAATTCA
AGGAGATGAGAGATTCCGGGAAATAGCTAAGGAGATATAAGGAGACTCAAGAGATATAAGGAGAC
TCGGAAATATCCCAAGAGATATCTAGACTTCAGAAACGTTTCAGGAATATTCAGAGATTTTGAAA
AAGATTGAGAGATATCCAGAGACTTGGTAGAAACTATAAGATTTCCAGAGACTCTGAAAATTTAG
TTGATATTTAGATATCGAGACTCACAGAATACTAAGATATTTAGG
Right flanking sequence: Indices 234543 -- 235042
AACATCCGTAGACCTTGACATCAACGTAGACCTTGACATTTACGCAATACGAGCGTTTAAACCTT
AACTGTCGCACCCTACAATCGCACCCCATACAATCGCTCCCCCATACTTACTAAGCAGTTTATTG
CTACATGCGTACCCTACATCATGCGTCGTCCTGGGTGGGGTTTTTCGCGTAGAAGAAGTTGACCC
CAAGCAACTTGGAACCAGCCCCGTTCTTGGCAATCCAGTCGCGAACGCCCAGACCAGCGATCCCC
GTGCCCCAGTTGGGCCGGTCCTTCGGGGCCGCCTCGGAGCCAAACTGGGCGCCCGCGGCCTGCTT
GTACAACAAAAACACATACCGGTGCTTCCCCGTGTTGGGCGGCGGCGCCGGACCCTCGTAGGGCA
CCAATTGTAGCCCCAGACCCGGGTCGATGGTGTGGATGACGTCATCCTCCAGCTTGGGAGGCGAC
AACTTGATGTCGGCCGCCACCCAGTGGCAGTACTCCAGCCACTTG
Found at i:234652 original size:16 final size:15
Alignment explanation
Indices: 234613--234654 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
234603 ACCTTAACTG
234613 TCGCA-CCC-TACAA
1 TCGCACCCCATACAA
234626 TCGCACCCCATACAA
1 TCGCACCCCATACAA
*
234641 TCGCTCCCCCATAC
1 TCGC-ACCCCATAC
234655 TTACTAAGCA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
13 5 0.20
14 3 0.12
15 9 0.36
16 8 0.32
ACGTcount: A:0.26, C:0.50, G:0.07, T:0.17
Consensus pattern (15 bp):
TCGCACCCCATACAA
Left flanking sequence: Indices 234113 -- 234612
GTACGTCAATGTTACCCATTGAGCGTGCTGTCACTGGTGCGTTACCGAGCCGACACTTTCCCCCT
GGCGACATTTTTAGGCAGTGACAATAATTCAAGGAGATGAGAGATTCCGGGAAATAGCTAAGGAG
ATATAAGGAGACTCAAGAGATATAAGGAGACTCGGAAATATCCCAAGAGATATCTAGACTTCAGA
AACGTTTCAGGAATATTCAGAGATTTTGAAAAAGATTGAGAGATATCCAGAGACTTGGTAGAAAC
TATAAGATTTCCAGAGACTCTGAAAATTTAGTTGATATTTAGATATCGAGACTCACAGAATACTA
AGATATTTAGGTAGACCTTGAAATCTATGTAGACCTTGATATATTTATAAACCTGATATCTGTAG
ACCTTGAAATCTATGTAGACCTTGATATATCTATAGACCTAACATCCGTAGACCTTGACATCAAC
GTAGACCTTGACATTTACGCAATACGAGCGTTTAAACCTTAACTG
Right flanking sequence: Indices 234655 -- 235154
TTACTAAGCAGTTTATTGCTACATGCGTACCCTACATCATGCGTCGTCCTGGGTGGGGTTTTTCG
CGTAGAAGAAGTTGACCCCAAGCAACTTGGAACCAGCCCCGTTCTTGGCAATCCAGTCGCGAACG
CCCAGACCAGCGATCCCCGTGCCCCAGTTGGGCCGGTCCTTCGGGGCCGCCTCGGAGCCAAACTG
GGCGCCCGCGGCCTGCTTGTACAACAAAAACACATACCGGTGCTTCCCCGTGTTGGGCGGCGGCG
CCGGACCCTCGTAGGGCACCAATTGTAGCCCCAGACCCGGGTCGATGGTGTGGATGACGTCATCC
TCCAGCTTGGGAGGCGACAACTTGATGTCGGCCGCCACCCAGTGGCAGTACTCCAGCCACTTGTG
GTCTTGGTTCGAGGGGGCGTCGGGGTCGGTGAACACCACAAGAAACTTGTCGTTGGGGTTCAATT
TCTCGGTGGTGCCGTCCTGGTTGGGGCTGTTCAACGTGAACAGAA
Found at i:235632 original size:10 final size:10
Alignment explanation
Indices: 235590--235624 Score: 61
Period size: 10 Copynumber: 3.5 Consensus size: 10
235580 CTGGATTGGT
*
235590 TTGGACTGAA
1 TTGGGCTGAA
235600 TTGGGCTGAA
1 TTGGGCTGAA
235610 TTGGGCTGAA
1 TTGGGCTGAA
235620 TTGGG
1 TTGGG
235625 TTGGATTGCC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
10 24 1.00
ACGTcount: A:0.20, C:0.09, G:0.40, T:0.31
Consensus pattern (10 bp):
TTGGGCTGAA
Left flanking sequence: Indices 235090 -- 235589
CTTGTCGTTGGGGTTCAATTTCTCGGTGGTGCCGTCCTGGTTGGGGCTGTTCAACGTGAACAGAA
TCGACGGCACCTGCTGGGTGGCGTCGACCGCCAACTCGTTGCCAAGGGTCACCTTGTTCTCCGGC
AGGTACTCCACCAGGAGAAGGCCCTGGGTGTCGAATTTGTCAATCACATCCGGCACCACCTGGTG
CTTGGTGTAGCTGTCGTTGAGCAGCTGGGAAATCGTGATCAACCGGCGCACCCGGGGCACCCGAG
GCATTGACCGGGCCACACTAACACAACTCCGCCAATTCATCATCGCAATTCACTCACGGCTGGTG
GTAGGTTCAAGAGGTTTTTCGACCTGTGCTGCACCTTACTGGAGCAATCGCGCAACTATTGTTGG
TAGCGCGTGCATTGCATGATTCGGGCTGGGGTTGCGAGCCAGCCCTGTGGCTGCAAACGGGTGGA
AGGGGGTGGAGTGCGTTACACCAGATTGGCATGGGCTGGATTGGT
Right flanking sequence: Indices 235625 -- 236124
TTGGATTGCCCGGTATCCTTTGTATCATATGGTTTTTTACGGAAAAATCGGTATAAGGTATCCAC
TGAGAATCCCGCAACTGAGACACTATGTGAATGATCTATGTGCATATAGTACACTATCTGGAAGA
CTCGGGTATTGGCACCACCGTCCGGTCCGGGAATCTTATTTATAGAATAGTTACAGTATAATACA
TTGCGGAAGCTGTGCGTAGCGACAGCCTTCGGGTTTTCGCCAGGTGGCTGGCCCTCCTCAGGGTT
GGTGGTGGTTAGGCGTACTCGTCGTTGGCACCGTCGCGCGCAGTGTTGGTGGCCTCGTATCCGGG
CTGCGACGGCGACGCAGACCCTTCAAACCGGCCCTCGGGCGCGTACTCGCCAGACTCCTTTTTGA
CTCCGTTGGTGTACTGGGCGTCGCCCGCGGGCTCGGGGTGGGCGGCGTTGCCCTCCTGCTGGTAG
TCAAACGACTCAAACTCGTACCGCTGCTGCGGCTGGCCTGCGTCC
Found at i:235632 original size:20 final size:20
Alignment explanation
Indices: 235585--235632 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
235575 ATGGGCTGGA
*
235585 TTGGTTTGGACTGAATTGGG
1 TTGGATTGGACTGAATTGGG
* * *
235605 CTGAATTGGGCTGAATTGGG
1 TTGGATTGGACTGAATTGGG
235625 TTGGATTG
1 TTGGATTG
235633 CCCGGTATCC
Statistics
Matches: 22, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.17, C:0.06, G:0.40, T:0.38
Consensus pattern (20 bp):
TTGGATTGGACTGAATTGGG
Left flanking sequence: Indices 235085 -- 235584
AGAAACTTGTCGTTGGGGTTCAATTTCTCGGTGGTGCCGTCCTGGTTGGGGCTGTTCAACGTGAA
CAGAATCGACGGCACCTGCTGGGTGGCGTCGACCGCCAACTCGTTGCCAAGGGTCACCTTGTTCT
CCGGCAGGTACTCCACCAGGAGAAGGCCCTGGGTGTCGAATTTGTCAATCACATCCGGCACCACC
TGGTGCTTGGTGTAGCTGTCGTTGAGCAGCTGGGAAATCGTGATCAACCGGCGCACCCGGGGCAC
CCGAGGCATTGACCGGGCCACACTAACACAACTCCGCCAATTCATCATCGCAATTCACTCACGGC
TGGTGGTAGGTTCAAGAGGTTTTTCGACCTGTGCTGCACCTTACTGGAGCAATCGCGCAACTATT
GTTGGTAGCGCGTGCATTGCATGATTCGGGCTGGGGTTGCGAGCCAGCCCTGTGGCTGCAAACGG
GTGGAAGGGGGTGGAGTGCGTTACACCAGATTGGCATGGGCTGGA
Right flanking sequence: Indices 235633 -- 236132
CCCGGTATCCTTTGTATCATATGGTTTTTTACGGAAAAATCGGTATAAGGTATCCACTGAGAATC
CCGCAACTGAGACACTATGTGAATGATCTATGTGCATATAGTACACTATCTGGAAGACTCGGGTA
TTGGCACCACCGTCCGGTCCGGGAATCTTATTTATAGAATAGTTACAGTATAATACATTGCGGAA
GCTGTGCGTAGCGACAGCCTTCGGGTTTTCGCCAGGTGGCTGGCCCTCCTCAGGGTTGGTGGTGG
TTAGGCGTACTCGTCGTTGGCACCGTCGCGCGCAGTGTTGGTGGCCTCGTATCCGGGCTGCGACG
GCGACGCAGACCCTTCAAACCGGCCCTCGGGCGCGTACTCGCCAGACTCCTTTTTGACTCCGTTG
GTGTACTGGGCGTCGCCCGCGGGCTCGGGGTGGGCGGCGTTGCCCTCCTGCTGGTAGTCAAACGA
CTCAAACTCGTACCGCTGCTGCGGCTGGCCTGCGTCCAAGTTGTC
Found at i:237311 original size:18 final size:18
Alignment explanation
Indices: 237284--237318 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
237274 CACCTCGTTG
*
237284 CCTTCTCACCTACGCTCC
1 CCTTCCCACCTACGCTCC
237302 CCTTCCCACCTACGCTC
1 CCTTCCCACCTACGCTC
237319 ACCTATCCGC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.11, C:0.57, G:0.06, T:0.26
Consensus pattern (18 bp):
CCTTCCCACCTACGCTCC
Left flanking sequence: Indices 236784 -- 237283
AAAAAACAGGAGCTGCGAAAACGTTTGGATTCGTGGGGTATCGCGATAAAACACAAAGCAACGTA
GGGGCTAGGGAGCCTGGGCTGGGATTTAGGGGGATGCGCGCAGCGAGATGTATTCTCCGTTATCG
GAGTCAAATTCTTTCGCCAGCTCCTGCAACTGACGGTGCGCCGTTGCGCCCGGTGGTGGTTCTGG
TACGCGCACGACGGTACGGGACGTTTCAGGAGGCGGAAGGGTGTGGGTTTGGTTGGGGTGGGTGC
AATCAGCGGAGGTTGAGGCTAATTGGAGAGTATTGGAGCTTATTTTAGAGTGTTAAGTAGTGTTT
TCTGTCTTTCGTTAATTCTAGAATGGGTTCATATTCTTCATTACTAATAGTCACGATTGGAGGTA
ACCTGTGCTTTAACCCACTCTTCTTACGTAGGCCCTTTTCTCCTAAGTCCTCCTCTCACCTAGCT
CCTCCCCCCACCTCGTTCCCTTACACGTTCACTTCCACCTCGTTG
Right flanking sequence: Indices 237319 -- 237818
ACCTATCCGCAGTTTGACGTATTATTCTCAGATCGCAACCTCGCTAAGCTGCTAAGCTGCGCAAG
AAACGTTTCCGCCACCACGGGTCTGCTAAATACCCACTCGTACTGCTCTGTAACACATCCCCACC
CTCTCCCTCCACCCTTAGTGTCCTCGCTAAGCGTCGTAAAAAGTCCCTGCAGGCCGGGCTACGCA
CACACTAGCGAATTGATCGATTCGCGTACAACACTGCCACCACTAGTCCCTGGCTCTTCCACCAC
CTCTGCACGGGTACTGAATCCACTCGCCTTACACACCGCCCTTTCGCTTTCCACCACCACTCACA
CCGCATCACATCCACCATGGCTTCTGTGAGTGAACAACTTTTGGAGGCGGCCCGTCGGGACAACA
CCGAGCTTCTCCTCGAGGTGAGAGCGCTGGTGAACGACGAGCCCAAGCTCGCCGACTTGATCAAC
ACCACCACCGAGCAGGTGACCATGAACTCGCCATTGCACTTGGCG
Found at i:241284 original size:20 final size:20
Alignment explanation
Indices: 241254--241307 Score: 74
Period size: 20 Copynumber: 2.7 Consensus size: 20
241244 GGGGTGTATC
*
241254 GGCTATCTAGACTGGGTTCAA
1 GGCTGTCTAGACTGGGTT-AA
*
241275 GG-TGTCTAGACTGGGTTTA
1 GGCTGTCTAGACTGGGTTAA
241294 GGCTGTCTAGACTG
1 GGCTGTCTAGACTG
241308 AGTATGGATG
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
19 3 0.10
20 25 0.83
21 2 0.07
ACGTcount: A:0.19, C:0.17, G:0.33, T:0.31
Consensus pattern (20 bp):
GGCTGTCTAGACTGGGTTAA
Left flanking sequence: Indices 240754 -- 241253
TAAAAAAGCGAAAGCGGGCGAAAAGGGGAAAAAACAATGCCTGCGCTACCGCCACAGGTGGAGGC
CGAGGGTGGCCGGGGGAAGCGCGGGAGAGTGGTGGTTCGGTTCAGTGTAGAGTAGGCGTGGCGGG
GGACACGGGTCGTATGGGGTATTGTGAGGAGATCTTCTCGGTTATTCACGCTACGGGATGGCCCC
GCCCTAGGGAGCGGGTGGAACTAGGCGGTTCCGCGCGCAGAAGCCGGTGGAACCGAGCAAACTGC
CCACGGCGGTCTCTCCCGCGCCCACGCAGCCTTCGTTTCGCTTTTCGTTACGTTGTTATTATCTC
TAGCTAATGGGGTGGACGCGTCGCGTGGCGCTACTTTTCGCCCTCGTAGTCACTGAAAAAACTCT
GCGTGATGCAGCCTGTAAGCCCAGATCTAGGCGATATGTGGGCCCGAGGCGGGGTGTAGGCTGAG
TGTGACTGGGTCTGAGCTGAGTATAGGTTGAATATGGGGTGTATC
Right flanking sequence: Indices 241308 -- 241807
AGTATGGATGTCTAGGCTGAGTGTGGGCTATCTAGACTGAGTATGGCTATCTAGACTGAGTGTAC
GCTATCGAGGCTGAGTATAGACTATCTACACTGGGTCTACACTCAATCCAGACAACCCTTAGGCC
AACCCACGCCCTCTTAAGCTACACTACTTCCGCGACCGTGCCGTCTCGGGACGGAGCAAGCTCAC
GGCTCGGCCCTTATCGCTAGTGTAAACCAACCTCTCGGGCCCCATCCACGCCGCCAACGCGCACG
ACGTAGTGGTGGCAGACTCGGGCACCTCGTACACGAGCCCGGTGCCCCGGTAGACACGGGTGTTG
GCACGGCCGTCGAAGCTGACCGCCAACAACCCGTCCTCGTTGATGTCCACCGCAGACACGGGCTC
GTCGACGTCGGCAAGCACCTGGTCGTGCCCCAACGTGCGCAGCTCCCAGTAACTCACCGCACCGT
CGTTGGAGCCCACCGCGATGGTCTTGCCCAGCGGAGCAAGCGCCA
Found at i:241347 original size:20 final size:19
Alignment explanation
Indices: 241279--241405 Score: 101
Period size: 20 Copynumber: 6.5 Consensus size: 19
241269 GTTCAAGGTG
* * *
241279 TCTAGACTGGGTTTAGGCTG
1 TCTAGACTGAGTAT-GGCTA
* *
241299 TCTAGACTGAGTATGGATG
1 TCTAGACTGAGTATGGCTA
* *
241318 TCTAGGCTGAGTGTGGGCTA
1 TCTAGACTGAGTAT-GGCTA
241338 TCTAGACTGAGTATGGCTA
1 TCTAGACTGAGTATGGCTA
* *
241357 TCTAGACTGAGTGTACGCTA
1 TCTAGACTGAGTAT-GGCTA
* * *
241377 TCGAGGCTGAGTATAGACTA
1 TCTAGACTGAGTAT-GGCTA
*
241397 TCTACACTG
1 TCTAGACTG
241406 GGTCTACACT
Statistics
Matches: 86, Mismatches: 19, Indels: 4
0.79 0.17 0.04
Matches are distributed among these distances:
19 34 0.40
20 52 0.60
ACGTcount: A:0.23, C:0.17, G:0.30, T:0.31
Consensus pattern (19 bp):
TCTAGACTGAGTATGGCTA
Left flanking sequence: Indices 240779 -- 241278
GGGAAAAAACAATGCCTGCGCTACCGCCACAGGTGGAGGCCGAGGGTGGCCGGGGGAAGCGCGGG
AGAGTGGTGGTTCGGTTCAGTGTAGAGTAGGCGTGGCGGGGGACACGGGTCGTATGGGGTATTGT
GAGGAGATCTTCTCGGTTATTCACGCTACGGGATGGCCCCGCCCTAGGGAGCGGGTGGAACTAGG
CGGTTCCGCGCGCAGAAGCCGGTGGAACCGAGCAAACTGCCCACGGCGGTCTCTCCCGCGCCCAC
GCAGCCTTCGTTTCGCTTTTCGTTACGTTGTTATTATCTCTAGCTAATGGGGTGGACGCGTCGCG
TGGCGCTACTTTTCGCCCTCGTAGTCACTGAAAAAACTCTGCGTGATGCAGCCTGTAAGCCCAGA
TCTAGGCGATATGTGGGCCCGAGGCGGGGTGTAGGCTGAGTGTGACTGGGTCTGAGCTGAGTATA
GGTTGAATATGGGGTGTATCGGCTATCTAGACTGGGTTCAAGGTG
Right flanking sequence: Indices 241406 -- 241905
GGTCTACACTCAATCCAGACAACCCTTAGGCCAACCCACGCCCTCTTAAGCTACACTACTTCCGC
GACCGTGCCGTCTCGGGACGGAGCAAGCTCACGGCTCGGCCCTTATCGCTAGTGTAAACCAACCT
CTCGGGCCCCATCCACGCCGCCAACGCGCACGACGTAGTGGTGGCAGACTCGGGCACCTCGTACA
CGAGCCCGGTGCCCCGGTAGACACGGGTGTTGGCACGGCCGTCGAAGCTGACCGCCAACAACCCG
TCCTCGTTGATGTCCACCGCAGACACGGGCTCGTCGACGTCGGCAAGCACCTGGTCGTGCCCCAA
CGTGCGCAGCTCCCAGTAACTCACCGCACCGTCGTTGGAGCCCACCGCGATGGTCTTGCCCAGCG
GAGCAAGCGCCACCGCGGTACACGCGGACCGGTGGCGCTCCAACAGCCCGATCTTGACCACCTTG
TTTAACGTGTTGAGCTCGTACACCGCGGTGGACCCGTCCTGGCTC
Found at i:241369 original size:39 final size:39
Alignment explanation
Indices: 241279--241405 Score: 137
Period size: 39 Copynumber: 3.2 Consensus size: 39
241269 GTTCAAGGTG
* * * * *
241279 TCTAGACTGGGTTTAGGCTGTCTAGACTGAGTATGGATG
1 TCTAGACTGAGTGTAGGCTATCTAGACTGAGTATGGCTA
* *
241318 TCTAGGCTGAGTGTGGGCTATCTAGACTGAGTATGGCTA
1 TCTAGACTGAGTGTAGGCTATCTAGACTGAGTATGGCTA
* * * *
241357 TCTAGACTGAGTGTACGCTATCGAGGCTGAGTATAGACTA
1 TCTAGACTGAGTGTAGGCTATCTAGACTGAGTAT-GGCTA
*
241397 TCTACACTG
1 TCTAGACTG
241406 GGTCTACACT
Statistics
Matches: 73, Mismatches: 14, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
39 61 0.84
40 12 0.16
ACGTcount: A:0.23, C:0.17, G:0.30, T:0.31
Consensus pattern (39 bp):
TCTAGACTGAGTGTAGGCTATCTAGACTGAGTATGGCTA
Left flanking sequence: Indices 240779 -- 241278
GGGAAAAAACAATGCCTGCGCTACCGCCACAGGTGGAGGCCGAGGGTGGCCGGGGGAAGCGCGGG
AGAGTGGTGGTTCGGTTCAGTGTAGAGTAGGCGTGGCGGGGGACACGGGTCGTATGGGGTATTGT
GAGGAGATCTTCTCGGTTATTCACGCTACGGGATGGCCCCGCCCTAGGGAGCGGGTGGAACTAGG
CGGTTCCGCGCGCAGAAGCCGGTGGAACCGAGCAAACTGCCCACGGCGGTCTCTCCCGCGCCCAC
GCAGCCTTCGTTTCGCTTTTCGTTACGTTGTTATTATCTCTAGCTAATGGGGTGGACGCGTCGCG
TGGCGCTACTTTTCGCCCTCGTAGTCACTGAAAAAACTCTGCGTGATGCAGCCTGTAAGCCCAGA
TCTAGGCGATATGTGGGCCCGAGGCGGGGTGTAGGCTGAGTGTGACTGGGTCTGAGCTGAGTATA
GGTTGAATATGGGGTGTATCGGCTATCTAGACTGGGTTCAAGGTG
Right flanking sequence: Indices 241406 -- 241905
GGTCTACACTCAATCCAGACAACCCTTAGGCCAACCCACGCCCTCTTAAGCTACACTACTTCCGC
GACCGTGCCGTCTCGGGACGGAGCAAGCTCACGGCTCGGCCCTTATCGCTAGTGTAAACCAACCT
CTCGGGCCCCATCCACGCCGCCAACGCGCACGACGTAGTGGTGGCAGACTCGGGCACCTCGTACA
CGAGCCCGGTGCCCCGGTAGACACGGGTGTTGGCACGGCCGTCGAAGCTGACCGCCAACAACCCG
TCCTCGTTGATGTCCACCGCAGACACGGGCTCGTCGACGTCGGCAAGCACCTGGTCGTGCCCCAA
CGTGCGCAGCTCCCAGTAACTCACCGCACCGTCGTTGGAGCCCACCGCGATGGTCTTGCCCAGCG
GAGCAAGCGCCACCGCGGTACACGCGGACCGGTGGCGCTCCAACAGCCCGATCTTGACCACCTTG
TTTAACGTGTTGAGCTCGTACACCGCGGTGGACCCGTCCTGGCTC
Found at i:246715 original size:9 final size:9
Alignment explanation
Indices: 246701--246734 Score: 50
Period size: 9 Copynumber: 3.8 Consensus size: 9
246691 ACGGTGACAA
246701 CCAGCAGGG
1 CCAGCAGGG
246710 CCAGCAGGG
1 CCAGCAGGG
**
246719 CCAGTGGGG
1 CCAGCAGGG
246728 CCAGCAG
1 CCAGCAG
246735 CCTCAGCAGT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.21, C:0.32, G:0.44, T:0.03
Consensus pattern (9 bp):
CCAGCAGGG
Left flanking sequence: Indices 246201 -- 246700
CCTCCGGGTTCCCCTGGACCCCCCTTAGTCACGGTGGCGGCCCCCGAGCCTCCGGCCCCCAAGCG
GACGGAGTCGGAGGAGCCTGCTACGGCTTCTACGTCCAGCTCCACCCAAGAGCAGTCCACGGACT
CAGCTCCTGTCCAGGACACCAACTCGATTTTGCTGCGGTTGGCGTCGTTGGCACAGACGACTAAA
TCTCCCCAGTCTGCTACTGCGAACCCTGTGGCGTCTGACGCCAACTCGATTCTCTCACAATTGAG
CATGTTGAGTGGGTCCCAGTCGCAACCCTCTTCTCAGCAGCAGCAAGACCCCAGCCAGTTGTTGG
GGGCGTTGCAGCTGTTGTCTTCTAACCAGCAATCTAGCCAGTATTCTCAACCTAGCTCCTTGCCT
CCTGTACCCCAAACTGGTTGCCTGTACAACCAGCAGGGCCTGGCCTTGCGTGGGGGCCGCTCGCC
TCCCCGGTACAACCGTGACCGTTCTCCCACGAGATACGGTGACAA
Right flanking sequence: Indices 246735 -- 247234
CCTCAGCAGTGGGGCCAGCAGCAACAGCAGCAACCCCCGCAGCAGCAGCAACAGCAGCAGCGCGG
TCGTCCCGGTAAGCCTCCGGCGGAGATTAACCAGCCGGGCGAGCCGCACTACCGCCCTCGTAACG
TTGGTTTTGACCCCAGTATTGCCCAGGGGTCGTTTAAAGTGCTTAGTCGTACTCTCTTCATTGGT
GGTGTGCCTCGCGGCATGGACGAAAACGGTCTCTCTGATGTTTTGCGGCCGTTTGCCGAGACTCA
GTCCATTATTATGAACCTGGAGCGCAAGCACGCGTTCGTCAAGGTGTACCTGCGTAGGGAAGCGG
AGCAGGTGATCAGTCTGTTCAACAAGGATGGTCTGTTGCCGCTCCGCACTCGGTGGGGTGTAGGT
TTTGGTCCCCGTGACTGTTGCAACTATCAGCACGGTGTGCTGGTGATTCCTATTCTGCGGTTGAC
GGACGCTGACCGCACCTGGGTTGTGTCTGCCCAATGGGGTGGCAC
Found at i:246762 original size:9 final size:9
Alignment explanation
Indices: 246750--246793 Score: 52
Period size: 9 Copynumber: 4.9 Consensus size: 9
246740 GCAGTGGGGC
246750 CAGCAGCAA
1 CAGCAGCAA
246759 CAGCAGCAA
1 CAGCAGCAA
** * *
246768 CCCCCGCAG
1 CAGCAGCAA
246777 CAGCAGCAA
1 CAGCAGCAA
246786 CAGCAGCA
1 CAGCAGCA
246794 GCGCGGTCGT
Statistics
Matches: 27, Mismatches: 8, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
9 27 1.00
ACGTcount: A:0.36, C:0.41, G:0.23, T:0.00
Consensus pattern (9 bp):
CAGCAGCAA
Left flanking sequence: Indices 246250 -- 246749
CTCCGGCCCCCAAGCGGACGGAGTCGGAGGAGCCTGCTACGGCTTCTACGTCCAGCTCCACCCAA
GAGCAGTCCACGGACTCAGCTCCTGTCCAGGACACCAACTCGATTTTGCTGCGGTTGGCGTCGTT
GGCACAGACGACTAAATCTCCCCAGTCTGCTACTGCGAACCCTGTGGCGTCTGACGCCAACTCGA
TTCTCTCACAATTGAGCATGTTGAGTGGGTCCCAGTCGCAACCCTCTTCTCAGCAGCAGCAAGAC
CCCAGCCAGTTGTTGGGGGCGTTGCAGCTGTTGTCTTCTAACCAGCAATCTAGCCAGTATTCTCA
ACCTAGCTCCTTGCCTCCTGTACCCCAAACTGGTTGCCTGTACAACCAGCAGGGCCTGGCCTTGC
GTGGGGGCCGCTCGCCTCCCCGGTACAACCGTGACCGTTCTCCCACGAGATACGGTGACAACCAG
CAGGGCCAGCAGGGCCAGTGGGGCCAGCAGCCTCAGCAGTGGGGC
Right flanking sequence: Indices 246794 -- 247293
GCGCGGTCGTCCCGGTAAGCCTCCGGCGGAGATTAACCAGCCGGGCGAGCCGCACTACCGCCCTC
GTAACGTTGGTTTTGACCCCAGTATTGCCCAGGGGTCGTTTAAAGTGCTTAGTCGTACTCTCTTC
ATTGGTGGTGTGCCTCGCGGCATGGACGAAAACGGTCTCTCTGATGTTTTGCGGCCGTTTGCCGA
GACTCAGTCCATTATTATGAACCTGGAGCGCAAGCACGCGTTCGTCAAGGTGTACCTGCGTAGGG
AAGCGGAGCAGGTGATCAGTCTGTTCAACAAGGATGGTCTGTTGCCGCTCCGCACTCGGTGGGGT
GTAGGTTTTGGTCCCCGTGACTGTTGCAACTATCAGCACGGTGTGCTGGTGATTCCTATTCTGCG
GTTGACGGACGCTGACCGCACCTGGGTTGTGTCTGCCCAATGGGGTGGCACCGGTGGCGAGCCTT
TGAACAGCGGGATGGTTATTGACGAGCCCGATATCGAAATTGGTA
Found at i:246762 original size:21 final size:21
Alignment explanation
Indices: 246720--246764 Score: 72
Period size: 21 Copynumber: 2.1 Consensus size: 21
246710 CCAGCAGGGC
**
246720 CAGTGGGGCCAGCAGCCTCAG
1 CAGTGGGGCCAGCAGCAACAG
246741 CAGTGGGGCCAGCAGCAACAG
1 CAGTGGGGCCAGCAGCAACAG
246762 CAG
1 CAG
246765 CAACCCCCGC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.24, C:0.31, G:0.38, T:0.07
Consensus pattern (21 bp):
CAGTGGGGCCAGCAGCAACAG
Left flanking sequence: Indices 246220 -- 246719
CCCCCTTAGTCACGGTGGCGGCCCCCGAGCCTCCGGCCCCCAAGCGGACGGAGTCGGAGGAGCCT
GCTACGGCTTCTACGTCCAGCTCCACCCAAGAGCAGTCCACGGACTCAGCTCCTGTCCAGGACAC
CAACTCGATTTTGCTGCGGTTGGCGTCGTTGGCACAGACGACTAAATCTCCCCAGTCTGCTACTG
CGAACCCTGTGGCGTCTGACGCCAACTCGATTCTCTCACAATTGAGCATGTTGAGTGGGTCCCAG
TCGCAACCCTCTTCTCAGCAGCAGCAAGACCCCAGCCAGTTGTTGGGGGCGTTGCAGCTGTTGTC
TTCTAACCAGCAATCTAGCCAGTATTCTCAACCTAGCTCCTTGCCTCCTGTACCCCAAACTGGTT
GCCTGTACAACCAGCAGGGCCTGGCCTTGCGTGGGGGCCGCTCGCCTCCCCGGTACAACCGTGAC
CGTTCTCCCACGAGATACGGTGACAACCAGCAGGGCCAGCAGGGC
Right flanking sequence: Indices 246765 -- 247264
CAACCCCCGCAGCAGCAGCAACAGCAGCAGCGCGGTCGTCCCGGTAAGCCTCCGGCGGAGATTAA
CCAGCCGGGCGAGCCGCACTACCGCCCTCGTAACGTTGGTTTTGACCCCAGTATTGCCCAGGGGT
CGTTTAAAGTGCTTAGTCGTACTCTCTTCATTGGTGGTGTGCCTCGCGGCATGGACGAAAACGGT
CTCTCTGATGTTTTGCGGCCGTTTGCCGAGACTCAGTCCATTATTATGAACCTGGAGCGCAAGCA
CGCGTTCGTCAAGGTGTACCTGCGTAGGGAAGCGGAGCAGGTGATCAGTCTGTTCAACAAGGATG
GTCTGTTGCCGCTCCGCACTCGGTGGGGTGTAGGTTTTGGTCCCCGTGACTGTTGCAACTATCAG
CACGGTGTGCTGGTGATTCCTATTCTGCGGTTGACGGACGCTGACCGCACCTGGGTTGTGTCTGC
CCAATGGGGTGGCACCGGTGGCGAGCCTTTGAACAGCGGGATGGT
Found at i:268484 original size:12 final size:12
Alignment explanation
Indices: 268467--268501 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
268457 GGCACCGGCT
*
268467 CCTGCCGCTGCG
1 CCTGCCGCCGCG
268479 CCTGCCGCCGCG
1 CCTGCCGCCGCG
*
268491 CCCGCCGCCGC
1 CCTGCCGCCGC
268502 TCCGGTAGCT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.00, C:0.60, G:0.31, T:0.09
Consensus pattern (12 bp):
CCTGCCGCCGCG
Left flanking sequence: Indices 267967 -- 268466
AATACAACTTGAGCAACAGCGCCACGCAATAGATGTCGCCGTCTTTGACGCTGCTGTCCTCGATG
TTGCTGCCAACAAGCAAGTAGTTCGTGTACTTCTGGTCAATCTGCTCGCGCAAGTGGGTCACGGT
AGACTTGTTCCCCGACGTCCGGTACAACCCCTCGATATCAAGGCCGTACTGCTCGACCACCTCCA
TACATCTCTTCACCACCAACGGGACGTTGTCGATGCCGGCAAACTGGATCACCTCCTCAATGGAC
ACCCCAAATGTCGGCTGCGCAAGACTGTACGGCTTCGGTCCGGTAAGCTCAGGCGACGCCGAGGG
GTCGAGCGACGAGTACATCTGCGAAGGGGGCTGGATGGAGCTGGCGTTGTCGTGGTCCAGCTCGG
CGGTGGGGTACGGGGCCGTCAGCGTGGACTGGTTGCCGTTGTAGTTGGACTGGTTGTAGCTGTTG
CCATAGTCCCCGTCGCGGTACGACGAAGCCGCAGCGGCACCGGCT
Right flanking sequence: Indices 268502 -- 269001
TCCGGTAGCTGCCGATGTAGATCCGGAGTTGTAGCTCAGGGACTTGCCGTACGGCAGCGCACCCA
TCGAGGTTGTCAGCGCCGAAGGAGCCAGGGAGGTGTTGGGCGGCGGTTGTGAAGCGGTGGGCGCC
AGCAGAGGAGTAGAGGACGACGAAAAGTTGCGTTGGCCCTCGCTCTTATTAAGAAAAGGTTTGGG
TTGAGAGTGGGACTGCATCTTTCCGAGGGACGGGTGGACCACGTACTCCACCGGTTGCATCAGCT
TTTGCAGCGCCGGCGACCGCTCGTGCTTCATCAAATAGTCGTACAAGTCGCGCTCGTTGTCCACC
AGGGACGCGATGTCCTTCAACAGCGGCTTGCCCTCCTGCAACGGCACCGCCAACACTCCTGAGTT
CATGATCAAGTTCTCGTTCCAGGTGACGTACTTTTGCAACTGCAAGTTCATGGCGATGTCCATCT
GCAAAATCAAGTCCTTGAGCTTTTTCAGGTTGGTGGGACGGTGGA
Found at i:314381 original size:18 final size:18
Alignment explanation
Indices: 314359--314404 Score: 58
Period size: 18 Copynumber: 2.6 Consensus size: 18
314349 GGCTGGCCAC
*
314359 GGCCACTCCTCTGGGGGCT
1 GGCCACTCCGCTGGGGG-T
*
314378 -GCCACACCGCTGGGGGT
1 GGCCACTCCGCTGGGGGT
314395 GGCCACTCCG
1 GGCCACTCCG
314405 GTGCCTGGTG
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
17 1 0.04
18 22 0.96
ACGTcount: A:0.09, C:0.39, G:0.37, T:0.15
Consensus pattern (18 bp):
GGCCACTCCGCTGGGGGT
Left flanking sequence: Indices 313859 -- 314358
CCGCCCACCGAGGTGACGGCTGGCGCGGTGTTGCCCAACGTGGCCTACCCGAAGCTGACGTTCCC
CATAGAGTTGCGGCTTGACAACGTGGTACTGAAGTCAGGCGAACGACGCTGGCGCATGCGTAAGC
TCGCGTGGAAGATGGAGGAAAACGTCAAGGTGGCGGCCCATGTGTGTGACAAGCACAAGCACAAA
CTCGAGTCCGCAGAGGACTATGAGCGCAAGTCCAAGTTGTACGGCCCCAAGGAACAGGCGGCCAA
GGGCAACTTGCACCACCTGACCATCCAGACCGGGGTGGTGTTGACGCGCAACCCGCTGCAGTACG
TCGACCGCAACTCGCCGCCGCCCGAGGAGGGGAACCGTGACGTCGTAATTGACGACGGTGAAAAC
GAGCAGCCTCGCACCAACATTGCCGATGTCCACAACTCGTTCGTGGAGGATTTTATCCGCTACGG
GTACCGCACCAACCTGGGTGCCACCACCCCGTCTGGGCTGGCCAC
Right flanking sequence: Indices 314405 -- 314904
GTGCCTGGTGCAGCAGCCAGCACCCCGATTGGCGCTGCTGCTGTGGCCAACCGGATGCGCCGGTT
CCGCCACCCGGACCAGCCTCCCGTGCCTGCTGCCTTCACCGACGACGGCCTGGAGAGATTGTACC
TCGAGGAAACACGGGTGGTGCGCCATGGCGAGATCAAGAGCGGGTGGAAGCTGGATTTCTCCAAC
CGCGGCAAGGTTGAGATGGTGGCCCACATCGACATCAACGACTTTTTCACCGGCTGGCACAAGCC
AGTTACCACCAAAAGCAGCTTGGATGACAACCGCACCGACATGGTGCACCAGAACGCCCGGCTGA
TTGCCAATGTGGCGTGCGACATCGACGACCCCACCTTGGGTATCTTTGTCACCCACACGCTCGTG
GTGGAGGTAGTAGTTGCAGAGGAAGTGATTCACGACGTCAACAAAAGGCCGGCCCTCAAGAAGAC
TCGTTCGCTGGCTCTGCAAGTGCTGATGGACATCGACGGTCCCGA
Found at i:332084 original size:3 final size:3
Alignment explanation
Indices: 332076--332131 Score: 76
Period size: 3 Copynumber: 18.7 Consensus size: 3
332066 TTCATTGTCT
* * *
332076 TCG TCG TCG TCG TCG TCG TCG TCG TCT TCC TCA TCG TCG TCG TCG TCG
1 TCG TCG TCG TCG TCG TCG TCG TCG TCG TCG TCG TCG TCG TCG TCG TCG
*
332124 TCT TCG TC
1 TCG TCG TC
332132 TTTGTTGTCT
Statistics
Matches: 47, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
3 47 1.00
ACGTcount: A:0.02, C:0.36, G:0.25, T:0.38
Consensus pattern (3 bp):
TCG
Left flanking sequence: Indices 331576 -- 332075
CACCCTGTGGTGTGTTCGGCACTTTTGATCAACTGAAGTCCACCTCGCTTAAGACCACCGACAAC
GATTTTCTGATCCAATACACCGATGACTCCAGCGCCTTTGGCCAATTCGTCCATGACACAATCAC
TTTTGGTGGTGACGGTCTCACGGTGAAGGAAGCTGAATTCGCTGTGGCTAACGAGACCCACAACA
ACACGGTGGGTGTCTTTGGTCTCTCCTACTCCGGTCTCACGAACGGTGAGCGTAAATACACCACC
ATCCCCGAGATGATGAAAGAACAGGGGCTCATCAACCGTGTGGCCTACTCCGTCAACCTCATTAA
AGGCAAGGGTGGCCACCTCTTGTTTGGTGCCATTGATAAGGCTAAGTTTTCAGGGGAGTTGCGCG
CTGTGCCCGTTCTTCTGTCTGGTGGGGTTTACAAGACCCAGACTGTTCTTTTGACTGGTATTACC
GTTCACGGAGGTAACGTCACTGATGACACCTCGTCTTCATTGTCT
Right flanking sequence: Indices 332132 -- 332631
TTTGTTGTCTCTGCTGTCTTCTAGCCTGTCATCCTCCTCCCTTTCGTCGACCGTGGAAATCCCCT
CGTCGTCGTCCATTATTGATACCCCATCCTCATCCTCCAGTGTTGACGTGCCGTCGTCATCAATT
GACGTGACCTCTTCTTCCATCGAGAATGTTCCCTCGTCCTCTCTGAATGTTGAAATTCCGTCCTC
ATCCTCCAGCGTCGACGTTCCCTCGTCATCCATTGACGTAGCCTCTTCTTCCACCGAGAATGTTC
CCTCGTCCTCTCTGATTGTTGACATCCCGTCCTCTTCTCCCATTGAGAGTGTTCCCACATCGATT
GTGGACATCCTGTCCTCTTCGATCATTGACATCCCCTCAACATCTTCGAACGTGGAGATCCCGTC
GTCGTCTTTGACTGTCGGCATCCCATCAACGTCGTCTGCAATTGAGACCCCTTTTACCCCTTCGT
CGTCTATTGTTATCACAAGCGAGGGTGTTCCTACTTCCATCGTTT
Found at i:332330 original size:99 final size:99
Alignment explanation
Indices: 332223--332425 Score: 309
Period size: 99 Copynumber: 2.1 Consensus size: 99
332213 TGATACCCCA
* * * *
332223 TCCTCATCCTCCAGTGTTGACGTGCCGTCGTCATCAATTGACGT-GACCTCTTCTTCCATCGAGA
1 TCCTCATCCTCCAGCGTCGACGTGCCCTCGTCATCAATTGACGTAG-CCTCTTCTTCCACCGAGA
*
332287 ATGTTCCCTCGTCCTCTCTGAATGTTGAAATTCCG
65 ATGTTCCCTCGTCCTCTCTGAATGTTGAAATCCCG
* *
332322 TCCTCATCCTCCAGCGTCGACGTTCCCTCGTCATCCATTGACGTAGCCTCTTCTTCCACCGAGAA
1 TCCTCATCCTCCAGCGTCGACGTGCCCTCGTCATCAATTGACGTAGCCTCTTCTTCCACCGAGAA
* *
332387 TGTTCCCTCGTCCTCTCTGATTGTTGACATCCCG
66 TGTTCCCTCGTCCTCTCTGAATGTTGAAATCCCG
332421 TCCTC
1 TCCTC
332426 TTCTCCCATT
Statistics
Matches: 94, Mismatches: 9, Indels: 2
0.90 0.09 0.02
Matches are distributed among these distances:
99 93 0.99
100 1 0.01
ACGTcount: A:0.15, C:0.35, G:0.17, T:0.33
Consensus pattern (99 bp):
TCCTCATCCTCCAGCGTCGACGTGCCCTCGTCATCAATTGACGTAGCCTCTTCTTCCACCGAGAA
TGTTCCCTCGTCCTCTCTGAATGTTGAAATCCCG
Left flanking sequence: Indices 331723 -- 332222
TCACGGTGAAGGAAGCTGAATTCGCTGTGGCTAACGAGACCCACAACAACACGGTGGGTGTCTTT
GGTCTCTCCTACTCCGGTCTCACGAACGGTGAGCGTAAATACACCACCATCCCCGAGATGATGAA
AGAACAGGGGCTCATCAACCGTGTGGCCTACTCCGTCAACCTCATTAAAGGCAAGGGTGGCCACC
TCTTGTTTGGTGCCATTGATAAGGCTAAGTTTTCAGGGGAGTTGCGCGCTGTGCCCGTTCTTCTG
TCTGGTGGGGTTTACAAGACCCAGACTGTTCTTTTGACTGGTATTACCGTTCACGGAGGTAACGT
CACTGATGACACCTCGTCTTCATTGTCTTCGTCGTCGTCGTCGTCGTCGTCGTCTTCCTCATCGT
CGTCGTCGTCGTCTTCGTCTTTGTTGTCTCTGCTGTCTTCTAGCCTGTCATCCTCCTCCCTTTCG
TCGACCGTGGAAATCCCCTCGTCGTCGTCCATTATTGATACCCCA
Right flanking sequence: Indices 332426 -- 332925
TTCTCCCATTGAGAGTGTTCCCACATCGATTGTGGACATCCTGTCCTCTTCGATCATTGACATCC
CCTCAACATCTTCGAACGTGGAGATCCCGTCGTCGTCTTTGACTGTCGGCATCCCATCAACGTCG
TCTGCAATTGAGACCCCTTTTACCCCTTCGTCGTCTATTGTTATCACAAGCGAGGGTGTTCCTAC
TTCCATCGTTTCATCCTCGGACTTGCTGCTGTTGGTTGGCACAAGCACCCCTTCCACCTTGGAGG
ACCCTACTTCCGCTTCCCTGGCCACCTCTTTGGTTCTGCCATTGCCCTCGAGTGGTCTGTGCTCC
ACGGTTACTGAGACTGAGATTTACACTCCCACGGTGACTGTCACCCAACCTGCTCCCTCTGGAGA
GCAGGCTCCTACGAACCCCATCAACGCGGAGGACACAACCGTGCCCGGTGTGTCTTCGCTGAGTG
TTCCTCTGTACCACACCACAATCGGTGACCCCAAGAGCCTCACCA
Found at i:354796 original size:9 final size:9
Alignment explanation
Indices: 354782--354882 Score: 57
Period size: 9 Copynumber: 11.2 Consensus size: 9
354772 CATCTGCGGC
*
354782 GGTACCGGT
1 GGTACCAGT
354791 GGTACCAGT
1 GGTACCAGT
354800 GGTACCA-T
1 GGTACCAGT
354808 GAGTACCAGT
1 G-GTACCAGT
*
354818 AGTACCA-T
1 GGTACCAGT
*
354826 GAGCACCAGT
1 G-GTACCAGT
*
354836 AGTACC-GT
1 GGTACCAGT
*
354844 GAGTACCGGT
1 G-GTACCAGT
* * *
354854 AGTGCCGGT
1 GGTACCAGT
354863 GGTACC-GT
1 GGTACCAGT
*
354871 GGGCACCAGT
1 -GGTACCAGT
354881 GG
1 GG
354883 CACCGTGGGT
Statistics
Matches: 72, Mismatches: 12, Indels: 16
0.72 0.12 0.16
Matches are distributed among these distances:
8 7 0.10
9 59 0.82
10 6 0.08
ACGTcount: A:0.22, C:0.24, G:0.35, T:0.20
Consensus pattern (9 bp):
GGTACCAGT
Left flanking sequence: Indices 354282 -- 354781
CGAGCCATTGTGAAGAATCCAGAGATCTTGATCTTAGATGAGGCCTTCTCGTGTATGGATAACAT
GGACGTAATGTCCAGGTGTCATGACATCGTTGCCAAAGATCTCCCAGATACCACTGTGCTTTCGA
TTGGCCATTTAGATTGGGAATTGGCTCATTATGACTTCATGGTACATCTTTTGGGCAATGACGCT
CGTGAGTATAAACTTTATCGTGCCCCGTAAATACTATAGACATTGCACTCCTTATAATTTTGATG
ATCACCAAATCTGCTTTCATTTTTGGAAAATGTGTAAAATTTGTAAAAATTCCCCAAGGCTTCGC
TCGACATCGATTTGTGAAGAGTTCGAACTCTACAAATGGCGATTGAATTAATGAACATATATTTC
TTTTTTTTGGTTTAAAACACAAAGTATCACAACATAATACAAATTTAAAGGGTGTCCTCGATCTT
ATCCTTGATCTTCTCAAAGAAACCCTTCTTCTCACCATCTGCGGC
Right flanking sequence: Indices 354883 -- 355382
CACCGTGGGTGCCGGAAGACTCGTACGAGCCAGGCACGTTCACGTTGTCACGACCAGTGGCACCA
GTGGCACCAACACCATGACCGGTAGTACCAGTGGCACCAACACCGTGACCAGTGGTGCCGGTGGT
TCCAGTAGTCCCAGAGTGGTGACCAGAACCCACAGCACCAGCAGCGGCACCAGCCTTACCGGCAA
GACCGCCTTGGTTAGAGTCGCCGTAAAGCTTCTCTTGGTCCTTAGCAGCCTCGTAGCGCAGGCCA
GCGGAAGTGATGTGACCAGTCGAGCCAACACCGTGACCGGTGGACCCAACACCGTGACCAGCGGA
ACCAACACCGGTGGAACCAACACCGTGGCCAGTGGTACCAGTGGTACCAGAGTGGTGACCAGAGC
CCATGGCCCCAGCAGCAGCACCGGCCTTACCGGCAAGACCGCCCTGGTTAGAGTCGCCGTAAAGC
TTCTCTTGGTCCTTAGCGTTCTCGTAACGCTGGCCAGCGGAAGAG
Found at i:354805 original size:18 final size:18
Alignment explanation
Indices: 354783--354856 Score: 87
Period size: 18 Copynumber: 4.1 Consensus size: 18
354773 ATCTGCGGCG
*
354783 GTACCGGTG-GTACCAGTG
1 GTACC-GTGAGTACCAGTA
*
354801 GTACCATGAGTACCAGTA
1 GTACCGTGAGTACCAGTA
* *
354819 GTACCATGAGCACCAGTA
1 GTACCGTGAGTACCAGTA
*
354837 GTACCGTGAGTACCGGTA
1 GTACCGTGAGTACCAGTA
354855 GT
1 GT
354857 GCCGGTGGTA
Statistics
Matches: 49, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
17 2 0.04
18 47 0.96
ACGTcount: A:0.26, C:0.23, G:0.30, T:0.22
Consensus pattern (18 bp):
GTACCGTGAGTACCAGTA
Left flanking sequence: Indices 354283 -- 354782
GAGCCATTGTGAAGAATCCAGAGATCTTGATCTTAGATGAGGCCTTCTCGTGTATGGATAACATG
GACGTAATGTCCAGGTGTCATGACATCGTTGCCAAAGATCTCCCAGATACCACTGTGCTTTCGAT
TGGCCATTTAGATTGGGAATTGGCTCATTATGACTTCATGGTACATCTTTTGGGCAATGACGCTC
GTGAGTATAAACTTTATCGTGCCCCGTAAATACTATAGACATTGCACTCCTTATAATTTTGATGA
TCACCAAATCTGCTTTCATTTTTGGAAAATGTGTAAAATTTGTAAAAATTCCCCAAGGCTTCGCT
CGACATCGATTTGTGAAGAGTTCGAACTCTACAAATGGCGATTGAATTAATGAACATATATTTCT
TTTTTTTGGTTTAAAACACAAAGTATCACAACATAATACAAATTTAAAGGGTGTCCTCGATCTTA
TCCTTGATCTTCTCAAAGAAACCCTTCTTCTCACCATCTGCGGCG
Right flanking sequence: Indices 354857 -- 355356
GCCGGTGGTACCGTGGGCACCAGTGGCACCGTGGGTGCCGGAAGACTCGTACGAGCCAGGCACGT
TCACGTTGTCACGACCAGTGGCACCAGTGGCACCAACACCATGACCGGTAGTACCAGTGGCACCA
ACACCGTGACCAGTGGTGCCGGTGGTTCCAGTAGTCCCAGAGTGGTGACCAGAACCCACAGCACC
AGCAGCGGCACCAGCCTTACCGGCAAGACCGCCTTGGTTAGAGTCGCCGTAAAGCTTCTCTTGGT
CCTTAGCAGCCTCGTAGCGCAGGCCAGCGGAAGTGATGTGACCAGTCGAGCCAACACCGTGACCG
GTGGACCCAACACCGTGACCAGCGGAACCAACACCGGTGGAACCAACACCGTGGCCAGTGGTACC
AGTGGTACCAGAGTGGTGACCAGAGCCCATGGCCCCAGCAGCAGCACCGGCCTTACCGGCAAGAC
CGCCCTGGTTAGAGTCGCCGTAAAGCTTCTCTTGGTCCTTAGCGT
Found at i:355242 original size:21 final size:21
Alignment explanation
Indices: 355154--355217 Score: 83
Period size: 21 Copynumber: 3.0 Consensus size: 21
355144 CGGAAGTGAT
* *
355154 GTGACCAGTCGAGCCAACACC
1 GTGACCAGTGGAACCAACACC
* *
355175 GTGACCGGTGGACCCAACACC
1 GTGACCAGTGGAACCAACACC
*
355196 GTGACCAGCGGAACCAACACC
1 GTGACCAGTGGAACCAACACC
355217 G
1 G
355218 GTGGAACCAA
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 37 1.00
ACGTcount: A:0.28, C:0.38, G:0.27, T:0.08
Consensus pattern (21 bp):
GTGACCAGTGGAACCAACACC
Left flanking sequence: Indices 354654 -- 355153
TTAATGAACATATATTTCTTTTTTTTGGTTTAAAACACAAAGTATCACAACATAATACAAATTTA
AAGGGTGTCCTCGATCTTATCCTTGATCTTCTCAAAGAAACCCTTCTTCTCACCATCTGCGGCGG
TACCGGTGGTACCAGTGGTACCATGAGTACCAGTAGTACCATGAGCACCAGTAGTACCGTGAGTA
CCGGTAGTGCCGGTGGTACCGTGGGCACCAGTGGCACCGTGGGTGCCGGAAGACTCGTACGAGCC
AGGCACGTTCACGTTGTCACGACCAGTGGCACCAGTGGCACCAACACCATGACCGGTAGTACCAG
TGGCACCAACACCGTGACCAGTGGTGCCGGTGGTTCCAGTAGTCCCAGAGTGGTGACCAGAACCC
ACAGCACCAGCAGCGGCACCAGCCTTACCGGCAAGACCGCCTTGGTTAGAGTCGCCGTAAAGCTT
CTCTTGGTCCTTAGCAGCCTCGTAGCGCAGGCCAGCGGAAGTGAT
Right flanking sequence: Indices 355218 -- 355717
GTGGAACCAACACCGTGGCCAGTGGTACCAGTGGTACCAGAGTGGTGACCAGAGCCCATGGCCCC
AGCAGCAGCACCGGCCTTACCGGCAAGACCGCCCTGGTTAGAGTCGCCGTAAAGCTTCTCTTGGT
CCTTAGCGTTCTCGTAACGCTGGCCAGCGGAAGAGTGGTGGCCAGTAGAGCCAACACCGTGACCG
GTGGAACCAACACCAGTGGAGCCAACACCGTGGCCAGTGGAGCCAACACCAGTGGAACCAACACC
AGTGGAACCAACACCAGTGGAACCAACACCGCGACCAGTAGAGCCAACACCACCAGCGCCGGAAG
GGGCGTACTCACCAGTGGAGCTCACACCGGTGGAACCAACACCAGTGGTACCAGAGTGGTGCCCA
GAGTGGTGACCAGAGCCCATGGCACCGGCAGCAGCACCGGCCTTACCGGCAAGACCGCCCTGGTT
AGAGTCGCCGTAAAGCTTCTCTTGGTCCTTAGCGTTCTCGTAACG
Found at i:355426 original size:231 final size:231
Alignment explanation
Indices: 355008--355426 Score: 653
Period size: 231 Copynumber: 1.8 Consensus size: 231
354998 AGTGGTGCCG
* * *
355008 GTGGTTCCAGTAGTCCCAGAGTGGTGACCAGAACCCACAGCACCAGCAGCGGCACCAGCCTTACC
1 GTGGTACCAGTAGTACCAGAGTGGTGACCAGAACCCACAGCACCAGCAGCAGCACCAGCCTTACC
* *
355073 GGCAAGACCGCCTTGGTTAGAGTCGCCGTAAAGCTTCTCTTGGTCCTTAGCAGCCTCGTAGCGCA
66 GGCAAGACCGCCCTGGTTAGAGTCGCCGTAAAGCTTCTCTTGGTCCTTAGCAGCCTCGTAACGCA
* * *
355138 GGCCAGCGGAAGTGATGTGACCAGTCGAGCCAACACCGTGACCGGTGGACCCAACACCGTGACCA
131 GGCCAGCGGAAGAGATGTGACCAGTAGAGCCAACACCGTGACCGGTGGAACCAACACCGTGACCA
355203 GCGGAACCAACACCGGTGGAACCAACACCGTGGCCA
196 GCGGAACCAACACCGGTGGAACCAACACCGTGGCCA
* * ** * *
355239 GTGGTACCAGTGGTACCAGAGTGGTGACCAGAGCCCATGGCCCCAGCAGCAGCACCGGCCTTACC
1 GTGGTACCAGTAGTACCAGAGTGGTGACCAGAACCCACAGCACCAGCAGCAGCACCAGCCTTACC
*
355304 GGCAAGACCGCCCTGGTTAGAGTCGCCGTAAAGCTTCTCTTGGTCCTTAGC-GTTCTCGTAACGC
66 GGCAAGACCGCCCTGGTTAGAGTCGCCGTAAAGCTTCTCTTGGTCCTTAGCAG-CCTCGTAACGC
* *
355368 TGGCCAGCGGAAGAG-TGGTGGCCAGTAGAGCCAACACCGTGACCGGTGGAACCAACACC
130 AGGCCAGCGGAAGAGAT-GTGACCAGTAGAGCCAACACCGTGACCGGTGGAACCAACACC
355427 AGTGGAGCCA
Statistics
Matches: 169, Mismatches: 17, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
230 2 0.01
231 167 0.99
ACGTcount: A:0.23, C:0.32, G:0.29, T:0.16
Consensus pattern (231 bp):
GTGGTACCAGTAGTACCAGAGTGGTGACCAGAACCCACAGCACCAGCAGCAGCACCAGCCTTACC
GGCAAGACCGCCCTGGTTAGAGTCGCCGTAAAGCTTCTCTTGGTCCTTAGCAGCCTCGTAACGCA
GGCCAGCGGAAGAGATGTGACCAGTAGAGCCAACACCGTGACCGGTGGAACCAACACCGTGACCA
GCGGAACCAACACCGGTGGAACCAACACCGTGGCCA
Left flanking sequence: Indices 354508 -- 355007
TACTATAGACATTGCACTCCTTATAATTTTGATGATCACCAAATCTGCTTTCATTTTTGGAAAAT
GTGTAAAATTTGTAAAAATTCCCCAAGGCTTCGCTCGACATCGATTTGTGAAGAGTTCGAACTCT
ACAAATGGCGATTGAATTAATGAACATATATTTCTTTTTTTTGGTTTAAAACACAAAGTATCACA
ACATAATACAAATTTAAAGGGTGTCCTCGATCTTATCCTTGATCTTCTCAAAGAAACCCTTCTTC
TCACCATCTGCGGCGGTACCGGTGGTACCAGTGGTACCATGAGTACCAGTAGTACCATGAGCACC
AGTAGTACCGTGAGTACCGGTAGTGCCGGTGGTACCGTGGGCACCAGTGGCACCGTGGGTGCCGG
AAGACTCGTACGAGCCAGGCACGTTCACGTTGTCACGACCAGTGGCACCAGTGGCACCAACACCA
TGACCGGTAGTACCAGTGGCACCAACACCGTGACCAGTGGTGCCG
Right flanking sequence: Indices 355427 -- 355926
AGTGGAGCCAACACCGTGGCCAGTGGAGCCAACACCAGTGGAACCAACACCAGTGGAACCAACAC
CAGTGGAACCAACACCGCGACCAGTAGAGCCAACACCACCAGCGCCGGAAGGGGCGTACTCACCA
GTGGAGCTCACACCGGTGGAACCAACACCAGTGGTACCAGAGTGGTGCCCAGAGTGGTGACCAGA
GCCCATGGCACCGGCAGCAGCACCGGCCTTACCGGCAAGACCGCCCTGGTTAGAGTCGCCGTAAA
GCTTCTCTTGGTCCTTAGCGTTCTCGTAACGCTGGCCAGCGGAAGAGTGGTGGCCAGTAGAGCCA
ACACCGTGACCGGTGGAACCAACACCAGTGGAACCAACACCGTGACCGGTGGAACCAACACCAGT
GGAGCCAACACCGGTAGAACCGACACCGTGGCCAGTAGTACCAGTGGAACCAAGACCAGAGTGCT
TGTTGTGCTCGTGGGAAGCAAGACCAGCACCACCAGCACCGGCAG
Found at i:355436 original size:36 final size:36
Alignment explanation
Indices: 355389--355529 Score: 159
Period size: 36 Copynumber: 4.1 Consensus size: 36
355379 AGAGTGGTGG
* * *
355389 CCAGTAGAGCCAACACCGTGACCGGTGGAACCAACA
1 CCAGTGGAACCAACACCGTGACCAGTGGAACCAACA
* * *
355425 CCAGTGGAGCCAACACCGTGGCCAGTGGAGCCAACA
1 CCAGTGGAACCAACACCGTGACCAGTGGAACCAACA
355461 CCAGTGGAACC-A-A-C---ACCAGTGGAACCAACA
1 CCAGTGGAACCAACACCGTGACCAGTGGAACCAACA
* * *
355491 CCAGTGGAACCAACACCGCGACCAGTAGAGCCAACA
1 CCAGTGGAACCAACACCGTGACCAGTGGAACCAACA
355527 CCA
1 CCA
355530 CCAGCGCCGG
Statistics
Matches: 90, Mismatches: 9, Indels: 12
0.81 0.08 0.11
Matches are distributed among these distances:
30 25 0.28
31 1 0.01
32 1 0.01
33 2 0.02
34 1 0.01
35 1 0.01
36 59 0.66
ACGTcount: A:0.34, C:0.35, G:0.24, T:0.07
Consensus pattern (36 bp):
CCAGTGGAACCAACACCGTGACCAGTGGAACCAACA
Left flanking sequence: Indices 354889 -- 355388
GGGTGCCGGAAGACTCGTACGAGCCAGGCACGTTCACGTTGTCACGACCAGTGGCACCAGTGGCA
CCAACACCATGACCGGTAGTACCAGTGGCACCAACACCGTGACCAGTGGTGCCGGTGGTTCCAGT
AGTCCCAGAGTGGTGACCAGAACCCACAGCACCAGCAGCGGCACCAGCCTTACCGGCAAGACCGC
CTTGGTTAGAGTCGCCGTAAAGCTTCTCTTGGTCCTTAGCAGCCTCGTAGCGCAGGCCAGCGGAA
GTGATGTGACCAGTCGAGCCAACACCGTGACCGGTGGACCCAACACCGTGACCAGCGGAACCAAC
ACCGGTGGAACCAACACCGTGGCCAGTGGTACCAGTGGTACCAGAGTGGTGACCAGAGCCCATGG
CCCCAGCAGCAGCACCGGCCTTACCGGCAAGACCGCCCTGGTTAGAGTCGCCGTAAAGCTTCTCT
TGGTCCTTAGCGTTCTCGTAACGCTGGCCAGCGGAAGAGTGGTGG
Right flanking sequence: Indices 355530 -- 356029
CCAGCGCCGGAAGGGGCGTACTCACCAGTGGAGCTCACACCGGTGGAACCAACACCAGTGGTACC
AGAGTGGTGCCCAGAGTGGTGACCAGAGCCCATGGCACCGGCAGCAGCACCGGCCTTACCGGCAA
GACCGCCCTGGTTAGAGTCGCCGTAAAGCTTCTCTTGGTCCTTAGCGTTCTCGTAACGCTGGCCA
GCGGAAGAGTGGTGGCCAGTAGAGCCAACACCGTGACCGGTGGAACCAACACCAGTGGAACCAAC
ACCGTGACCGGTGGAACCAACACCAGTGGAGCCAACACCGGTAGAACCGACACCGTGGCCAGTAG
TACCAGTGGAACCAAGACCAGAGTGCTTGTTGTGCTCGTGGGAAGCAAGACCAGCACCACCAGCA
CCGGCAGCGGCACCACCCGCGGCGTACTCGCCAGCGTGGGAACCGTGGGTACCGTGGGTACCGTG
AGTACCAGTAGTACCATGGGTGCCGGTAGCGCCGTGAGTACCAGT
Found at i:355437 original size:15 final size:15
Alignment explanation
Indices: 355413--355507 Score: 118
Period size: 15 Copynumber: 5.9 Consensus size: 15
355403 ACCGTGACCG
355413 GTGGAACCAACACCA
1 GTGGAACCAACACCA
*
355428 GTGGAGCCAACACCGTGGCCA
1 GTGGAACCAACA------CCA
*
355449 GTGGAGCCAACACCA
1 GTGGAACCAACACCA
355464 GTGGAACCAACACCA
1 GTGGAACCAACACCA
355479 GTGGAACCAACACCA
1 GTGGAACCAACACCA
355494 GTGGAACCAACACC
1 GTGGAACCAACACC
355508 GCGACCAGTA
Statistics
Matches: 72, Mismatches: 2, Indels: 12
0.84 0.02 0.14
Matches are distributed among these distances:
15 57 0.79
21 15 0.21
ACGTcount: A:0.35, C:0.34, G:0.24, T:0.07
Consensus pattern (15 bp):
GTGGAACCAACACCA
Left flanking sequence: Indices 354913 -- 355412
CAGGCACGTTCACGTTGTCACGACCAGTGGCACCAGTGGCACCAACACCATGACCGGTAGTACCA
GTGGCACCAACACCGTGACCAGTGGTGCCGGTGGTTCCAGTAGTCCCAGAGTGGTGACCAGAACC
CACAGCACCAGCAGCGGCACCAGCCTTACCGGCAAGACCGCCTTGGTTAGAGTCGCCGTAAAGCT
TCTCTTGGTCCTTAGCAGCCTCGTAGCGCAGGCCAGCGGAAGTGATGTGACCAGTCGAGCCAACA
CCGTGACCGGTGGACCCAACACCGTGACCAGCGGAACCAACACCGGTGGAACCAACACCGTGGCC
AGTGGTACCAGTGGTACCAGAGTGGTGACCAGAGCCCATGGCCCCAGCAGCAGCACCGGCCTTAC
CGGCAAGACCGCCCTGGTTAGAGTCGCCGTAAAGCTTCTCTTGGTCCTTAGCGTTCTCGTAACGC
TGGCCAGCGGAAGAGTGGTGGCCAGTAGAGCCAACACCGTGACCG
Right flanking sequence: Indices 355508 -- 356007
GCGACCAGTAGAGCCAACACCACCAGCGCCGGAAGGGGCGTACTCACCAGTGGAGCTCACACCGG
TGGAACCAACACCAGTGGTACCAGAGTGGTGCCCAGAGTGGTGACCAGAGCCCATGGCACCGGCA
GCAGCACCGGCCTTACCGGCAAGACCGCCCTGGTTAGAGTCGCCGTAAAGCTTCTCTTGGTCCTT
AGCGTTCTCGTAACGCTGGCCAGCGGAAGAGTGGTGGCCAGTAGAGCCAACACCGTGACCGGTGG
AACCAACACCAGTGGAACCAACACCGTGACCGGTGGAACCAACACCAGTGGAGCCAACACCGGTA
GAACCGACACCGTGGCCAGTAGTACCAGTGGAACCAAGACCAGAGTGCTTGTTGTGCTCGTGGGA
AGCAAGACCAGCACCACCAGCACCGGCAGCGGCACCACCCGCGGCGTACTCGCCAGCGTGGGAAC
CGTGGGTACCGTGGGTACCGTGAGTACCAGTAGTACCATGGGTGC
Found at i:355451 original size:21 final size:21
Alignment explanation
Indices: 355385--355467 Score: 79
Period size: 21 Copynumber: 4.2 Consensus size: 21
355375 CGGAAGAGTG
*
355385 GTGGCCAGTAGAGCCAACACC
1 GTGGCCAGTGGAGCCAACACC
* * *
355406 GTGACCGGTGGAACCAACA--
1 GTGGCCAGTGGAGCCAACACC
355425 ----CCAGTGGAGCCAACACC
1 GTGGCCAGTGGAGCCAACACC
355442 GTGGCCAGTGGAGCCAACACC
1 GTGGCCAGTGGAGCCAACACC
355463 AGTGG
1 -GTGG
355468 AACCAACACC
Statistics
Matches: 49, Mismatches: 6, Indels: 13
0.72 0.09 0.19
Matches are distributed among these distances:
15 13 0.27
21 32 0.65
22 4 0.08
ACGTcount: A:0.28, C:0.31, G:0.31, T:0.10
Consensus pattern (21 bp):
GTGGCCAGTGGAGCCAACACC
Left flanking sequence: Indices 354885 -- 355384
CCGTGGGTGCCGGAAGACTCGTACGAGCCAGGCACGTTCACGTTGTCACGACCAGTGGCACCAGT
GGCACCAACACCATGACCGGTAGTACCAGTGGCACCAACACCGTGACCAGTGGTGCCGGTGGTTC
CAGTAGTCCCAGAGTGGTGACCAGAACCCACAGCACCAGCAGCGGCACCAGCCTTACCGGCAAGA
CCGCCTTGGTTAGAGTCGCCGTAAAGCTTCTCTTGGTCCTTAGCAGCCTCGTAGCGCAGGCCAGC
GGAAGTGATGTGACCAGTCGAGCCAACACCGTGACCGGTGGACCCAACACCGTGACCAGCGGAAC
CAACACCGGTGGAACCAACACCGTGGCCAGTGGTACCAGTGGTACCAGAGTGGTGACCAGAGCCC
ATGGCCCCAGCAGCAGCACCGGCCTTACCGGCAAGACCGCCCTGGTTAGAGTCGCCGTAAAGCTT
CTCTTGGTCCTTAGCGTTCTCGTAACGCTGGCCAGCGGAAGAGTG
Right flanking sequence: Indices 355468 -- 355967
AACCAACACCAGTGGAACCAACACCAGTGGAACCAACACCGCGACCAGTAGAGCCAACACCACCA
GCGCCGGAAGGGGCGTACTCACCAGTGGAGCTCACACCGGTGGAACCAACACCAGTGGTACCAGA
GTGGTGCCCAGAGTGGTGACCAGAGCCCATGGCACCGGCAGCAGCACCGGCCTTACCGGCAAGAC
CGCCCTGGTTAGAGTCGCCGTAAAGCTTCTCTTGGTCCTTAGCGTTCTCGTAACGCTGGCCAGCG
GAAGAGTGGTGGCCAGTAGAGCCAACACCGTGACCGGTGGAACCAACACCAGTGGAACCAACACC
GTGACCGGTGGAACCAACACCAGTGGAGCCAACACCGGTAGAACCGACACCGTGGCCAGTAGTAC
CAGTGGAACCAAGACCAGAGTGCTTGTTGTGCTCGTGGGAAGCAAGACCAGCACCACCAGCACCG
GCAGCGGCACCACCCGCGGCGTACTCGCCAGCGTGGGAACCGTGG
Found at i:355481 original size:231 final size:227
Alignment explanation
Indices: 355014--355487 Score: 578
Period size: 231 Copynumber: 2.1 Consensus size: 227
355004 GCCGGTGGTT
* * *
355014 CCAGTAGTCCCAGAGTGGTGACCAGAACCCACAGCACCAGCAGCGGCACCAGCCTTACCGGCAAG
1 CCAGTGGTACCAGAGTGGTGACCAGAACCCACAGCACCAGCAGCAGCACCAGCCTTACCGGCAAG
* *
355079 ACCGCCTTGGTTAGAGTCGCCGTAAAGCTTCTCTTGGTCCTTAGCAGCCTCGTAGCGCAGGCCAG
66 ACCGCCCTGGTTAGAGTCGCCGTAAAGCTTCTCTTGGTCCTTAGCAGCCTCGTAACGCAGGCCAG
* * * *
355144 CGGAAGTGATGTGACCAGTCGAGCCAACACCGTGACCGGTGGACCCAACACCGTGACCAGCGGAA
131 CGGAAGAGATGTGACCAGTAGAGCCAACACCGTGACCGGTGGAACCAACACCGTGACCAAC-G-A
* **
355209 CCAACACCGGTGGAACCAACACCGTGGCCAGTGGTA
194 CCAACACCAGTGGAACCAACACCGTGGCCA--GACA
* ** * *
355245 CCAGTGGTACCAGAGTGGTGACCAGAGCCCATGGCCCCAGCAGCAGCACCGGCCTTACCGGCAAG
1 CCAGTGGTACCAGAGTGGTGACCAGAACCCACAGCACCAGCAGCAGCACCAGCCTTACCGGCAAG
* *
355310 ACCGCCCTGGTTAGAGTCGCCGTAAAGCTTCTCTTGGTCCTTAGC-GTTCTCGTAACGCTGGCCA
66 ACCGCCCTGGTTAGAGTCGCCGTAAAGCTTCTCTTGGTCCTTAGCAG-CCTCGTAACGCAGGCCA
*
355374 GCGGAAGAG-TGGTGGCCAGTAGAGCCAACACCGTGACCGGTGGAACCAACACCAGTGGAGCCAA
130 GCGGAAGAGAT-GTGACCAGTAGAGCCAACACCGTGACCGGTGGAACCAACACC-GT-GA-CCAA
**** *
355438 C-ACCGTGGCCAGTGGAGCCAACACCAGTGGAACCA-ACA
191 CGACCAACACCAGTGGAACCAACACC-GTGG--CCAGACA
*
355476 CCAGTGGAACCA
1 CCAGTGGTACCA
355488 ACACCAGTGG
Statistics
Matches: 209, Mismatches: 26, Indels: 16
0.83 0.10 0.06
Matches are distributed among these distances:
230 2 0.01
231 192 0.92
232 6 0.03
233 2 0.01
234 7 0.03
ACGTcount: A:0.25, C:0.32, G:0.29, T:0.14
Consensus pattern (227 bp):
CCAGTGGTACCAGAGTGGTGACCAGAACCCACAGCACCAGCAGCAGCACCAGCCTTACCGGCAAG
ACCGCCCTGGTTAGAGTCGCCGTAAAGCTTCTCTTGGTCCTTAGCAGCCTCGTAACGCAGGCCAG
CGGAAGAGATGTGACCAGTAGAGCCAACACCGTGACCGGTGGAACCAACACCGTGACCAACGACC
AACACCAGTGGAACCAACACCGTGGCCAGACA
Left flanking sequence: Indices 354514 -- 355013
AGACATTGCACTCCTTATAATTTTGATGATCACCAAATCTGCTTTCATTTTTGGAAAATGTGTAA
AATTTGTAAAAATTCCCCAAGGCTTCGCTCGACATCGATTTGTGAAGAGTTCGAACTCTACAAAT
GGCGATTGAATTAATGAACATATATTTCTTTTTTTTGGTTTAAAACACAAAGTATCACAACATAA
TACAAATTTAAAGGGTGTCCTCGATCTTATCCTTGATCTTCTCAAAGAAACCCTTCTTCTCACCA
TCTGCGGCGGTACCGGTGGTACCAGTGGTACCATGAGTACCAGTAGTACCATGAGCACCAGTAGT
ACCGTGAGTACCGGTAGTGCCGGTGGTACCGTGGGCACCAGTGGCACCGTGGGTGCCGGAAGACT
CGTACGAGCCAGGCACGTTCACGTTGTCACGACCAGTGGCACCAGTGGCACCAACACCATGACCG
GTAGTACCAGTGGCACCAACACCGTGACCAGTGGTGCCGGTGGTT
Right flanking sequence: Indices 355488 -- 355987
ACACCAGTGGAACCAACACCGCGACCAGTAGAGCCAACACCACCAGCGCCGGAAGGGGCGTACTC
ACCAGTGGAGCTCACACCGGTGGAACCAACACCAGTGGTACCAGAGTGGTGCCCAGAGTGGTGAC
CAGAGCCCATGGCACCGGCAGCAGCACCGGCCTTACCGGCAAGACCGCCCTGGTTAGAGTCGCCG
TAAAGCTTCTCTTGGTCCTTAGCGTTCTCGTAACGCTGGCCAGCGGAAGAGTGGTGGCCAGTAGA
GCCAACACCGTGACCGGTGGAACCAACACCAGTGGAACCAACACCGTGACCGGTGGAACCAACAC
CAGTGGAGCCAACACCGGTAGAACCGACACCGTGGCCAGTAGTACCAGTGGAACCAAGACCAGAG
TGCTTGTTGTGCTCGTGGGAAGCAAGACCAGCACCACCAGCACCGGCAGCGGCACCACCCGCGGC
GTACTCGCCAGCGTGGGAACCGTGGGTACCGTGGGTACCGTGAGT
Found at i:355610 original size:12 final size:12
Alignment explanation
Indices: 355586--355622 Score: 58
Period size: 12 Copynumber: 3.2 Consensus size: 12
355576 AACCAACACC
355586 AGTGGT-ACCAG
1 AGTGGTGACCAG
*
355597 AGTGGTGCCCAG
1 AGTGGTGACCAG
355609 AGTGGTGACCAG
1 AGTGGTGACCAG
355621 AG
1 AG
355623 CCCATGGCAC
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
11 6 0.26
12 17 0.74
ACGTcount: A:0.24, C:0.19, G:0.41, T:0.16
Consensus pattern (12 bp):
AGTGGTGACCAG
Left flanking sequence: Indices 355086 -- 355585
TGGTTAGAGTCGCCGTAAAGCTTCTCTTGGTCCTTAGCAGCCTCGTAGCGCAGGCCAGCGGAAGT
GATGTGACCAGTCGAGCCAACACCGTGACCGGTGGACCCAACACCGTGACCAGCGGAACCAACAC
CGGTGGAACCAACACCGTGGCCAGTGGTACCAGTGGTACCAGAGTGGTGACCAGAGCCCATGGCC
CCAGCAGCAGCACCGGCCTTACCGGCAAGACCGCCCTGGTTAGAGTCGCCGTAAAGCTTCTCTTG
GTCCTTAGCGTTCTCGTAACGCTGGCCAGCGGAAGAGTGGTGGCCAGTAGAGCCAACACCGTGAC
CGGTGGAACCAACACCAGTGGAGCCAACACCGTGGCCAGTGGAGCCAACACCAGTGGAACCAACA
CCAGTGGAACCAACACCAGTGGAACCAACACCGCGACCAGTAGAGCCAACACCACCAGCGCCGGA
AGGGGCGTACTCACCAGTGGAGCTCACACCGGTGGAACCAACACC
Right flanking sequence: Indices 355623 -- 356122
CCCATGGCACCGGCAGCAGCACCGGCCTTACCGGCAAGACCGCCCTGGTTAGAGTCGCCGTAAAG
CTTCTCTTGGTCCTTAGCGTTCTCGTAACGCTGGCCAGCGGAAGAGTGGTGGCCAGTAGAGCCAA
CACCGTGACCGGTGGAACCAACACCAGTGGAACCAACACCGTGACCGGTGGAACCAACACCAGTG
GAGCCAACACCGGTAGAACCGACACCGTGGCCAGTAGTACCAGTGGAACCAAGACCAGAGTGCTT
GTTGTGCTCGTGGGAAGCAAGACCAGCACCACCAGCACCGGCAGCGGCACCACCCGCGGCGTACT
CGCCAGCGTGGGAACCGTGGGTACCGTGGGTACCGTGAGTACCAGTAGTACCATGGGTGCCGGTA
GCGCCGTGAGTACCAGTGGCACCATGAGTGCCACGGTTGGTGTCAGAAGAGCTCGACTTGTTACC
ACTCAAAGCACCAACAGCCGCGCCAACCTTACCAGCAACACCGCC
Found at i:355775 original size:21 final size:21
Alignment explanation
Indices: 355749--355813 Score: 88
Period size: 21 Copynumber: 3.4 Consensus size: 21
355739 GCCAGTAGAG
355749 CCAACACCGTGACCGGTGGAA
1 CCAACACCGTGACCGGTGGAA
355770 CCAACACC---A---GTGGAA
1 CCAACACCGTGACCGGTGGAA
355785 CCAACACCGTGACCGGTGGAA
1 CCAACACCGTGACCGGTGGAA
355806 CCAACACC
1 CCAACACC
355814 AGTGGAGCCA
Statistics
Matches: 38, Mismatches: 0, Indels: 12
0.76 0.00 0.24
Matches are distributed among these distances:
15 14 0.37
18 2 0.05
21 22 0.58
ACGTcount: A:0.32, C:0.37, G:0.23, T:0.08
Consensus pattern (21 bp):
CCAACACCGTGACCGGTGGAA
Left flanking sequence: Indices 355249 -- 355748
TGGTACCAGAGTGGTGACCAGAGCCCATGGCCCCAGCAGCAGCACCGGCCTTACCGGCAAGACCG
CCCTGGTTAGAGTCGCCGTAAAGCTTCTCTTGGTCCTTAGCGTTCTCGTAACGCTGGCCAGCGGA
AGAGTGGTGGCCAGTAGAGCCAACACCGTGACCGGTGGAACCAACACCAGTGGAGCCAACACCGT
GGCCAGTGGAGCCAACACCAGTGGAACCAACACCAGTGGAACCAACACCAGTGGAACCAACACCG
CGACCAGTAGAGCCAACACCACCAGCGCCGGAAGGGGCGTACTCACCAGTGGAGCTCACACCGGT
GGAACCAACACCAGTGGTACCAGAGTGGTGCCCAGAGTGGTGACCAGAGCCCATGGCACCGGCAG
CAGCACCGGCCTTACCGGCAAGACCGCCCTGGTTAGAGTCGCCGTAAAGCTTCTCTTGGTCCTTA
GCGTTCTCGTAACGCTGGCCAGCGGAAGAGTGGTGGCCAGTAGAG
Right flanking sequence: Indices 355814 -- 356313
AGTGGAGCCAACACCGGTAGAACCGACACCGTGGCCAGTAGTACCAGTGGAACCAAGACCAGAGT
GCTTGTTGTGCTCGTGGGAAGCAAGACCAGCACCACCAGCACCGGCAGCGGCACCACCCGCGGCG
TACTCGCCAGCGTGGGAACCGTGGGTACCGTGGGTACCGTGAGTACCAGTAGTACCATGGGTGCC
GGTAGCGCCGTGAGTACCAGTGGCACCATGAGTGCCACGGTTGGTGTCAGAAGAGCTCGACTTGT
TACCACTCAAAGCACCAACAGCCGCGCCAACCTTACCAGCAACACCGCCTTGGTTGGTCTCACCA
AACTCCTTCTGCTCCTCCTTGGCAATCTTGAACTTGTCGGTGGCCGAAGAAGCCTGCGCAGATTC
GGGACCACCAATACCGGAGGATCCAGAGCCAGCGTTAGGACCAGCATTGGCCATAGCGCCAGCGG
CAGCACCAGCCTTACCGGACTTGCCAGTAGGGTTCGAGGCACCCT
Found at i:355784 original size:15 final size:15
Alignment explanation
Indices: 355764--355847 Score: 71
Period size: 15 Copynumber: 5.3 Consensus size: 15
355754 ACCGTGACCG
355764 GTGGAACCAACACCA
1 GTGGAACCAACACCA
355779 GTGGAACCAACACCGTGA
1 GTGGAACCAACACC---A
355797 CCGGTGGAACCAACACCA
1 ---GTGGAACCAACACCA
* *
355815 GTGGAGCCAACACCG
1 GTGGAACCAACACCA
* *
355830 GTAGAACCGACACC-
1 GTGGAACCAACACCA
355844 GTGG
1 GTGG
355848 CCAGTAGTAC
Statistics
Matches: 57, Mismatches: 6, Indels: 13
0.75 0.08 0.17
Matches are distributed among these distances:
14 3 0.05
15 38 0.67
18 2 0.04
21 14 0.25
ACGTcount: A:0.32, C:0.32, G:0.27, T:0.08
Consensus pattern (15 bp):
GTGGAACCAACACCA
Left flanking sequence: Indices 355264 -- 355763
GACCAGAGCCCATGGCCCCAGCAGCAGCACCGGCCTTACCGGCAAGACCGCCCTGGTTAGAGTCG
CCGTAAAGCTTCTCTTGGTCCTTAGCGTTCTCGTAACGCTGGCCAGCGGAAGAGTGGTGGCCAGT
AGAGCCAACACCGTGACCGGTGGAACCAACACCAGTGGAGCCAACACCGTGGCCAGTGGAGCCAA
CACCAGTGGAACCAACACCAGTGGAACCAACACCAGTGGAACCAACACCGCGACCAGTAGAGCCA
ACACCACCAGCGCCGGAAGGGGCGTACTCACCAGTGGAGCTCACACCGGTGGAACCAACACCAGT
GGTACCAGAGTGGTGCCCAGAGTGGTGACCAGAGCCCATGGCACCGGCAGCAGCACCGGCCTTAC
CGGCAAGACCGCCCTGGTTAGAGTCGCCGTAAAGCTTCTCTTGGTCCTTAGCGTTCTCGTAACGC
TGGCCAGCGGAAGAGTGGTGGCCAGTAGAGCCAACACCGTGACCG
Right flanking sequence: Indices 355848 -- 356347
CCAGTAGTACCAGTGGAACCAAGACCAGAGTGCTTGTTGTGCTCGTGGGAAGCAAGACCAGCACC
ACCAGCACCGGCAGCGGCACCACCCGCGGCGTACTCGCCAGCGTGGGAACCGTGGGTACCGTGGG
TACCGTGAGTACCAGTAGTACCATGGGTGCCGGTAGCGCCGTGAGTACCAGTGGCACCATGAGTG
CCACGGTTGGTGTCAGAAGAGCTCGACTTGTTACCACTCAAAGCACCAACAGCCGCGCCAACCTT
ACCAGCAACACCGCCTTGGTTGGTCTCACCAAACTCCTTCTGCTCCTCCTTGGCAATCTTGAACT
TGTCGGTGGCCGAAGAAGCCTGCGCAGATTCGGGACCACCAATACCGGAGGATCCAGAGCCAGCG
TTAGGACCAGCATTGGCCATAGCGCCAGCGGCAGCACCAGCCTTACCGGACTTGCCAGTAGGGTT
CGAGGCACCCTGCATCTGCTGTTGGTTCTTAGCCTCTTCAAACCG
Found at i:355789 original size:36 final size:36
Alignment explanation
Indices: 355740--355829 Score: 162
Period size: 36 Copynumber: 2.5 Consensus size: 36
355730 AGAGTGGTGG
*
355740 CCAGTAGAGCCAACACCGTGACCGGTGGAACCAACA
1 CCAGTGGAGCCAACACCGTGACCGGTGGAACCAACA
*
355776 CCAGTGGAACCAACACCGTGACCGGTGGAACCAACA
1 CCAGTGGAGCCAACACCGTGACCGGTGGAACCAACA
355812 CCAGTGGAGCCAACACCG
1 CCAGTGGAGCCAACACCG
355830 GTAGAACCGA
Statistics
Matches: 51, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
36 51 1.00
ACGTcount: A:0.32, C:0.34, G:0.26, T:0.08
Consensus pattern (36 bp):
CCAGTGGAGCCAACACCGTGACCGGTGGAACCAACA
Left flanking sequence: Indices 355240 -- 355739
TGGTACCAGTGGTACCAGAGTGGTGACCAGAGCCCATGGCCCCAGCAGCAGCACCGGCCTTACCG
GCAAGACCGCCCTGGTTAGAGTCGCCGTAAAGCTTCTCTTGGTCCTTAGCGTTCTCGTAACGCTG
GCCAGCGGAAGAGTGGTGGCCAGTAGAGCCAACACCGTGACCGGTGGAACCAACACCAGTGGAGC
CAACACCGTGGCCAGTGGAGCCAACACCAGTGGAACCAACACCAGTGGAACCAACACCAGTGGAA
CCAACACCGCGACCAGTAGAGCCAACACCACCAGCGCCGGAAGGGGCGTACTCACCAGTGGAGCT
CACACCGGTGGAACCAACACCAGTGGTACCAGAGTGGTGCCCAGAGTGGTGACCAGAGCCCATGG
CACCGGCAGCAGCACCGGCCTTACCGGCAAGACCGCCCTGGTTAGAGTCGCCGTAAAGCTTCTCT
TGGTCCTTAGCGTTCTCGTAACGCTGGCCAGCGGAAGAGTGGTGG
Right flanking sequence: Indices 355830 -- 356329
GTAGAACCGACACCGTGGCCAGTAGTACCAGTGGAACCAAGACCAGAGTGCTTGTTGTGCTCGTG
GGAAGCAAGACCAGCACCACCAGCACCGGCAGCGGCACCACCCGCGGCGTACTCGCCAGCGTGGG
AACCGTGGGTACCGTGGGTACCGTGAGTACCAGTAGTACCATGGGTGCCGGTAGCGCCGTGAGTA
CCAGTGGCACCATGAGTGCCACGGTTGGTGTCAGAAGAGCTCGACTTGTTACCACTCAAAGCACC
AACAGCCGCGCCAACCTTACCAGCAACACCGCCTTGGTTGGTCTCACCAAACTCCTTCTGCTCCT
CCTTGGCAATCTTGAACTTGTCGGTGGCCGAAGAAGCCTGCGCAGATTCGGGACCACCAATACCG
GAGGATCCAGAGCCAGCGTTAGGACCAGCATTGGCCATAGCGCCAGCGGCAGCACCAGCCTTACC
GGACTTGCCAGTAGGGTTCGAGGCACCCTGCATCTGCTGTTGGTT
Found at i:355968 original size:9 final size:9
Alignment explanation
Indices: 355954--355990 Score: 56
Period size: 9 Copynumber: 4.1 Consensus size: 9
355944 TACTCGCCAG
*
355954 CGTGGGAAC
1 CGTGGGTAC
355963 CGTGGGTAC
1 CGTGGGTAC
355972 CGTGGGTAC
1 CGTGGGTAC
*
355981 CGTGAGTAC
1 CGTGGGTAC
355990 C
1 C
355991 AGTAGTACCA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.16, C:0.24, G:0.41, T:0.19
Consensus pattern (9 bp):
CGTGGGTAC
Left flanking sequence: Indices 355454 -- 355953
GCCAACACCAGTGGAACCAACACCAGTGGAACCAACACCAGTGGAACCAACACCGCGACCAGTAG
AGCCAACACCACCAGCGCCGGAAGGGGCGTACTCACCAGTGGAGCTCACACCGGTGGAACCAACA
CCAGTGGTACCAGAGTGGTGCCCAGAGTGGTGACCAGAGCCCATGGCACCGGCAGCAGCACCGGC
CTTACCGGCAAGACCGCCCTGGTTAGAGTCGCCGTAAAGCTTCTCTTGGTCCTTAGCGTTCTCGT
AACGCTGGCCAGCGGAAGAGTGGTGGCCAGTAGAGCCAACACCGTGACCGGTGGAACCAACACCA
GTGGAACCAACACCGTGACCGGTGGAACCAACACCAGTGGAGCCAACACCGGTAGAACCGACACC
GTGGCCAGTAGTACCAGTGGAACCAAGACCAGAGTGCTTGTTGTGCTCGTGGGAAGCAAGACCAG
CACCACCAGCACCGGCAGCGGCACCACCCGCGGCGTACTCGCCAG
Right flanking sequence: Indices 355991 -- 356490
AGTAGTACCATGGGTGCCGGTAGCGCCGTGAGTACCAGTGGCACCATGAGTGCCACGGTTGGTGT
CAGAAGAGCTCGACTTGTTACCACTCAAAGCACCAACAGCCGCGCCAACCTTACCAGCAACACCG
CCTTGGTTGGTCTCACCAAACTCCTTCTGCTCCTCCTTGGCAATCTTGAACTTGTCGGTGGCCGA
AGAAGCCTGCGCAGATTCGGGACCACCAATACCGGAGGATCCAGAGCCAGCGTTAGGACCAGCAT
TGGCCATAGCGCCAGCGGCAGCACCAGCCTTACCGGACTTGCCAGTAGGGTTCGAGGCACCCTGC
ATCTGCTGTTGGTTCTTAGCCTCTTCAAACCGCAGGCTCTTCTCACCAGCCTTGGCACCGGCCTT
TTCAGTCATACCATGAGGCTGAGCGTTCCCGTGGTTGTGTTCCTGACCCATGGCCTCCTTGAAGC
GACCAGTTTTAGAATCGTCGTAACCAGTGGACCCAGTGTTGCCGT
Found at i:355998 original size:18 final size:18
Alignment explanation
Indices: 355977--356029 Score: 52
Period size: 18 Copynumber: 2.9 Consensus size: 18
355967 GGTACCGTGG
355977 GTACCGTGAGTACCAGTA
1 GTACCGTGAGTACCAGTA
* * * *
355995 GTACCATGGGTGCCGGTA
1 GTACCGTGAGTACCAGTA
**
356013 GCGCCGTGAGTACCAGT
1 GTACCGTGAGTACCAGT
356030 GGCACCATGA
Statistics
Matches: 25, Mismatches: 10, Indels: 0
0.71 0.29 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.21, C:0.25, G:0.34, T:0.21
Consensus pattern (18 bp):
GTACCGTGAGTACCAGTA
Left flanking sequence: Indices 355477 -- 355976
CAGTGGAACCAACACCAGTGGAACCAACACCGCGACCAGTAGAGCCAACACCACCAGCGCCGGAA
GGGGCGTACTCACCAGTGGAGCTCACACCGGTGGAACCAACACCAGTGGTACCAGAGTGGTGCCC
AGAGTGGTGACCAGAGCCCATGGCACCGGCAGCAGCACCGGCCTTACCGGCAAGACCGCCCTGGT
TAGAGTCGCCGTAAAGCTTCTCTTGGTCCTTAGCGTTCTCGTAACGCTGGCCAGCGGAAGAGTGG
TGGCCAGTAGAGCCAACACCGTGACCGGTGGAACCAACACCAGTGGAACCAACACCGTGACCGGT
GGAACCAACACCAGTGGAGCCAACACCGGTAGAACCGACACCGTGGCCAGTAGTACCAGTGGAAC
CAAGACCAGAGTGCTTGTTGTGCTCGTGGGAAGCAAGACCAGCACCACCAGCACCGGCAGCGGCA
CCACCCGCGGCGTACTCGCCAGCGTGGGAACCGTGGGTACCGTGG
Right flanking sequence: Indices 356030 -- 356529
GGCACCATGAGTGCCACGGTTGGTGTCAGAAGAGCTCGACTTGTTACCACTCAAAGCACCAACAG
CCGCGCCAACCTTACCAGCAACACCGCCTTGGTTGGTCTCACCAAACTCCTTCTGCTCCTCCTTG
GCAATCTTGAACTTGTCGGTGGCCGAAGAAGCCTGCGCAGATTCGGGACCACCAATACCGGAGGA
TCCAGAGCCAGCGTTAGGACCAGCATTGGCCATAGCGCCAGCGGCAGCACCAGCCTTACCGGACT
TGCCAGTAGGGTTCGAGGCACCCTGCATCTGCTGTTGGTTCTTAGCCTCTTCAAACCGCAGGCTC
TTCTCACCAGCCTTGGCACCGGCCTTTTCAGTCATACCATGAGGCTGAGCGTTCCCGTGGTTGTG
TTCCTGACCCATGGCCTCCTTGAAGCGACCAGTTTTAGAATCGTCGTAACCAGTGGACCCAGTGT
TGCCGTAGGCGCCAGTGTTACCGACACCATGGCCAGTAGAACCAA
Found at i:356535 original size:15 final size:15
Alignment explanation
Indices: 356517--356563 Score: 76
Period size: 15 Copynumber: 3.1 Consensus size: 15
356507 GACACCATGG
356517 CCAGTAGAACCAACA
1 CCAGTAGAACCAACA
*
356532 CCAGTCGAACCAACA
1 CCAGTAGAACCAACA
*
356547 CCAGTAGAACCGACA
1 CCAGTAGAACCAACA
356562 CC
1 CC
356564 GTGGCCAGTG
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
15 29 1.00
ACGTcount: A:0.40, C:0.38, G:0.15, T:0.06
Consensus pattern (15 bp):
CCAGTAGAACCAACA
Left flanking sequence: Indices 356017 -- 356516
CGTGAGTACCAGTGGCACCATGAGTGCCACGGTTGGTGTCAGAAGAGCTCGACTTGTTACCACTC
AAAGCACCAACAGCCGCGCCAACCTTACCAGCAACACCGCCTTGGTTGGTCTCACCAAACTCCTT
CTGCTCCTCCTTGGCAATCTTGAACTTGTCGGTGGCCGAAGAAGCCTGCGCAGATTCGGGACCAC
CAATACCGGAGGATCCAGAGCCAGCGTTAGGACCAGCATTGGCCATAGCGCCAGCGGCAGCACCA
GCCTTACCGGACTTGCCAGTAGGGTTCGAGGCACCCTGCATCTGCTGTTGGTTCTTAGCCTCTTC
AAACCGCAGGCTCTTCTCACCAGCCTTGGCACCGGCCTTTTCAGTCATACCATGAGGCTGAGCGT
TCCCGTGGTTGTGTTCCTGACCCATGGCCTCCTTGAAGCGACCAGTTTTAGAATCGTCGTAACCA
GTGGACCCAGTGTTGCCGTAGGCGCCAGTGTTACCGACACCATGG
Right flanking sequence: Indices 356564 -- 357063
GTGGCCAGTGGAGCCAACACCGGTAGAACCGACACCGTGGCCAGTAGTACCAGTGGAACCAAGAC
CAGAGTGCTTGTTGTGCTCGTGGGCAGCGAGACCAGCACCACCAGCACCGGCAGCGGCACCACCC
GCAGCGTACTCACCAGCGTGAGAGCCATGGCCAGTGCCAGTGTGGCCAGTGCCAGTGTGGCCCGA
AGAAGTGTTCGAGGAGTCACCCAAACCAACCTTCTCCTTGACCTTGTCCATAAGAGACGGGTCGT
CCTTGTTAGAAGGAGCGCTGTACTGGTTGGTGCCACGAGAGTCAACGCCCGCGGATCCATGGCCA
GTCGTAGAGGTGGGGTAGTTGGAGTGACCCAAGTTACCCTCGGTCTTACCGTATTGACCAGTAGA
ACCAACACCGTGGCCAGTAGAACCAACACCAGAGTGCTTGTGGTGCTCGTGAGAAGCAAGACCAG
CAGCACCAGCGCCAGCAGCGGCGCCACCAGCAGCGTACTCACCAG
Found at i:356572 original size:36 final size:36
Alignment explanation
Indices: 356532--356608 Score: 127
Period size: 36 Copynumber: 2.1 Consensus size: 36
356522 AGAACCAACA
356532 CCAGTCGAACCAACACCAGTAGAACCGACACCGTGG
1 CCAGTCGAACCAACACCAGTAGAACCGACACCGTGG
* * *
356568 CCAGTGGAGCCAACACCGGTAGAACCGACACCGTGG
1 CCAGTCGAACCAACACCAGTAGAACCGACACCGTGG
356604 CCAGT
1 CCAGT
356609 AGTACCAGTG
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
36 38 1.00
ACGTcount: A:0.30, C:0.35, G:0.26, T:0.09
Consensus pattern (36 bp):
CCAGTCGAACCAACACCAGTAGAACCGACACCGTGG
Left flanking sequence: Indices 356032 -- 356531
CACCATGAGTGCCACGGTTGGTGTCAGAAGAGCTCGACTTGTTACCACTCAAAGCACCAACAGCC
GCGCCAACCTTACCAGCAACACCGCCTTGGTTGGTCTCACCAAACTCCTTCTGCTCCTCCTTGGC
AATCTTGAACTTGTCGGTGGCCGAAGAAGCCTGCGCAGATTCGGGACCACCAATACCGGAGGATC
CAGAGCCAGCGTTAGGACCAGCATTGGCCATAGCGCCAGCGGCAGCACCAGCCTTACCGGACTTG
CCAGTAGGGTTCGAGGCACCCTGCATCTGCTGTTGGTTCTTAGCCTCTTCAAACCGCAGGCTCTT
CTCACCAGCCTTGGCACCGGCCTTTTCAGTCATACCATGAGGCTGAGCGTTCCCGTGGTTGTGTT
CCTGACCCATGGCCTCCTTGAAGCGACCAGTTTTAGAATCGTCGTAACCAGTGGACCCAGTGTTG
CCGTAGGCGCCAGTGTTACCGACACCATGGCCAGTAGAACCAACA
Right flanking sequence: Indices 356609 -- 357108
AGTACCAGTGGAACCAAGACCAGAGTGCTTGTTGTGCTCGTGGGCAGCGAGACCAGCACCACCAG
CACCGGCAGCGGCACCACCCGCAGCGTACTCACCAGCGTGAGAGCCATGGCCAGTGCCAGTGTGG
CCAGTGCCAGTGTGGCCCGAAGAAGTGTTCGAGGAGTCACCCAAACCAACCTTCTCCTTGACCTT
GTCCATAAGAGACGGGTCGTCCTTGTTAGAAGGAGCGCTGTACTGGTTGGTGCCACGAGAGTCAA
CGCCCGCGGATCCATGGCCAGTCGTAGAGGTGGGGTAGTTGGAGTGACCCAAGTTACCCTCGGTC
TTACCGTATTGACCAGTAGAACCAACACCGTGGCCAGTAGAACCAACACCAGAGTGCTTGTGGTG
CTCGTGAGAAGCAAGACCAGCAGCACCAGCGCCAGCAGCGGCGCCACCAGCAGCGTACTCACCAG
CGTGGCCGTGAGAACCGTGCTCACGGTTCAAGTTGACGTCGTCAA
Found at i:356741 original size:15 final size:15
Alignment explanation
Indices: 356721--356755 Score: 70
Period size: 15 Copynumber: 2.3 Consensus size: 15
356711 GTGAGAGCCA
356721 TGGCCAGTGCCAGTG
1 TGGCCAGTGCCAGTG
356736 TGGCCAGTGCCAGTG
1 TGGCCAGTGCCAGTG
356751 TGGCC
1 TGGCC
356756 CGAAGAAGTG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.11, C:0.29, G:0.40, T:0.20
Consensus pattern (15 bp):
TGGCCAGTGCCAGTG
Left flanking sequence: Indices 356221 -- 356720
AGGATCCAGAGCCAGCGTTAGGACCAGCATTGGCCATAGCGCCAGCGGCAGCACCAGCCTTACCG
GACTTGCCAGTAGGGTTCGAGGCACCCTGCATCTGCTGTTGGTTCTTAGCCTCTTCAAACCGCAG
GCTCTTCTCACCAGCCTTGGCACCGGCCTTTTCAGTCATACCATGAGGCTGAGCGTTCCCGTGGT
TGTGTTCCTGACCCATGGCCTCCTTGAAGCGACCAGTTTTAGAATCGTCGTAACCAGTGGACCCA
GTGTTGCCGTAGGCGCCAGTGTTACCGACACCATGGCCAGTAGAACCAACACCAGTCGAACCAAC
ACCAGTAGAACCGACACCGTGGCCAGTGGAGCCAACACCGGTAGAACCGACACCGTGGCCAGTAG
TACCAGTGGAACCAAGACCAGAGTGCTTGTTGTGCTCGTGGGCAGCGAGACCAGCACCACCAGCA
CCGGCAGCGGCACCACCCGCAGCGTACTCACCAGCGTGAGAGCCA
Right flanking sequence: Indices 356756 -- 357255
CGAAGAAGTGTTCGAGGAGTCACCCAAACCAACCTTCTCCTTGACCTTGTCCATAAGAGACGGGT
CGTCCTTGTTAGAAGGAGCGCTGTACTGGTTGGTGCCACGAGAGTCAACGCCCGCGGATCCATGG
CCAGTCGTAGAGGTGGGGTAGTTGGAGTGACCCAAGTTACCCTCGGTCTTACCGTATTGACCAGT
AGAACCAACACCGTGGCCAGTAGAACCAACACCAGAGTGCTTGTGGTGCTCGTGAGAAGCAAGAC
CAGCAGCACCAGCGCCAGCAGCGGCGCCACCAGCAGCGTACTCACCAGCGTGGCCGTGAGAACCG
TGCTCACGGTTCAAGTTGACGTCGTCAACGCCGCGTGTAACACCCTCGACACCACGATCGTGTTG
AGCGTGGGAGCGGTCGCCACGAAGCTCCTCTCTAGCATGCTCAAACTTGCGCTCAGCATCAAGCT
TGTGCTCTCTGACGATACCTTCATGACGGTGGTCACGAGCTTCCG
Found at i:357459 original size:12 final size:12
Alignment explanation
Indices: 357439--357570 Score: 120
Period size: 12 Copynumber: 10.5 Consensus size: 12
357429 TGCGAACCGG
*
357439 CAACACCGGAAC
1 CAACACCAGAAC
* *
357451 CAACTCCGGAAC
1 CAACACCAGAAC
357463 CAACACCAGAAC
1 CAACACCAGAAC
357475 CAACACCAGAAC
1 CAACACCAGAAC
*
357487 CAACACCAGAGC
1 CAACACCAGAAC
357499 CAACACCAGAACCGGCGC
1 CAACACCAGAA------C
* *
357517 CAACACCGGCAC
1 CAACACCAGAAC
* *
357529 CAGCACCAGAGC
1 CAACACCAGAAC
*
357541 CAACACCAGAGC
1 CAACACCAGAAC
*
357553 CAACACCAGAGC
1 CAACACCAGAAC
357565 CAACAC
1 CAACAC
357571 TGGAACCAGC
Statistics
Matches: 102, Mismatches: 12, Indels: 12
0.81 0.10 0.10
Matches are distributed among these distances:
12 92 0.90
18 10 0.10
ACGTcount: A:0.40, C:0.43, G:0.16, T:0.01
Consensus pattern (12 bp):
CAACACCAGAAC
Left flanking sequence: Indices 356939 -- 357438
GTATTGACCAGTAGAACCAACACCGTGGCCAGTAGAACCAACACCAGAGTGCTTGTGGTGCTCGT
GAGAAGCAAGACCAGCAGCACCAGCGCCAGCAGCGGCGCCACCAGCAGCGTACTCACCAGCGTGG
CCGTGAGAACCGTGCTCACGGTTCAAGTTGACGTCGTCAACGCCGCGTGTAACACCCTCGACACC
ACGATCGTGTTGAGCGTGGGAGCGGTCGCCACGAAGCTCCTCTCTAGCATGCTCAAACTTGCGCT
CAGCATCAAGCTTGTGCTCTCTGACGATACCTTCATGACGGTGGTCACGAGCTTCCGCGTTAGGG
TACTCCTGTCTGAATCTAGAAGACTCGACAGTCCCATCAGGACCAGTGGTCATGTTGTCATAGGC
ACGTTGACCGCCACCAACGTTGGTAGCAGAACCAACACCAGCACCCTCGTAGGGAGTCGATTGAC
CAGCATTCACCCCGGAGGTGGAGTGACCAAGACCTTGCGAACCGG
Right flanking sequence: Indices 357571 -- 358070
TGGAACCAGCAGTGTTGCCAACACCAGCACCAGTGGCGTTGGTGTCTCTGTGGCCCTCATCGGTG
ATCCCAGCCTGCTTAGCGAGGCCTTGGATGTCACCAGCCTGACCAGGGCCACTAGTGGACCCACC
GACGTCTTGACCGGTCGAACCCAACGGAGCACCACCCTTGGGACCCTTAGGGGGAGCACCAGGGG
TTTGCTGTTGATGTTTAGGCAATCTGTTGGCGCCAGGAATATCAGTCAAGTCTTCCGTACCAGTT
TCTTGATTGTAGGCAGACATGATTATGGATTCGACTGACAATGTCTTTGCTACTTATATACTCCC
ACAAATTCCGCTACATTGCGGTTGTCGAATCCAGGTTAGGTTGCTTTGCTGTGATCCGCCGCTAA
CTCCAAGGTGATTGCTTCCACATTCCCCGCTACACCACCGAGTCACCACCTTCACAGAGACAGAA
TTGGTTCGGAAAAAATCCAGACGTACTCTATGCATTGCAATTGAC
Found at i:357549 original size:18 final size:18
Alignment explanation
Indices: 357485--357561 Score: 59
Period size: 18 Copynumber: 4.3 Consensus size: 18
357475 CAACACCAGA
*
357485 ACCAACACCAGAGCCAAC
1 ACCAGCACCAGAGCCAAC
* * *
357503 ACCAGAACCGGCGCCAAC
1 ACCAGCACCAGAGCCAAC
*
357521 ACCGGCACCAGCA-CCAGA-
1 ACCAGCACCAG-AGCCA-AC
* *
357539 GCCAACACCAGAGCCAAC
1 ACCAGCACCAGAGCCAAC
357557 ACCAG
1 ACCAG
357562 AGCCAACACT
Statistics
Matches: 42, Mismatches: 13, Indels: 8
0.67 0.21 0.13
Matches are distributed among these distances:
17 2 0.05
18 39 0.93
19 1 0.02
ACGTcount: A:0.38, C:0.44, G:0.18, T:0.00
Consensus pattern (18 bp):
ACCAGCACCAGAGCCAAC
Left flanking sequence: Indices 356985 -- 357484
GAGTGCTTGTGGTGCTCGTGAGAAGCAAGACCAGCAGCACCAGCGCCAGCAGCGGCGCCACCAGC
AGCGTACTCACCAGCGTGGCCGTGAGAACCGTGCTCACGGTTCAAGTTGACGTCGTCAACGCCGC
GTGTAACACCCTCGACACCACGATCGTGTTGAGCGTGGGAGCGGTCGCCACGAAGCTCCTCTCTA
GCATGCTCAAACTTGCGCTCAGCATCAAGCTTGTGCTCTCTGACGATACCTTCATGACGGTGGTC
ACGAGCTTCCGCGTTAGGGTACTCCTGTCTGAATCTAGAAGACTCGACAGTCCCATCAGGACCAG
TGGTCATGTTGTCATAGGCACGTTGACCGCCACCAACGTTGGTAGCAGAACCAACACCAGCACCC
TCGTAGGGAGTCGATTGACCAGCATTCACCCCGGAGGTGGAGTGACCAAGACCTTGCGAACCGGC
AACACCGGAACCAACTCCGGAACCAACACCAGAACCAACACCAGA
Right flanking sequence: Indices 357562 -- 358061
AGCCAACACTGGAACCAGCAGTGTTGCCAACACCAGCACCAGTGGCGTTGGTGTCTCTGTGGCCC
TCATCGGTGATCCCAGCCTGCTTAGCGAGGCCTTGGATGTCACCAGCCTGACCAGGGCCACTAGT
GGACCCACCGACGTCTTGACCGGTCGAACCCAACGGAGCACCACCCTTGGGACCCTTAGGGGGAG
CACCAGGGGTTTGCTGTTGATGTTTAGGCAATCTGTTGGCGCCAGGAATATCAGTCAAGTCTTCC
GTACCAGTTTCTTGATTGTAGGCAGACATGATTATGGATTCGACTGACAATGTCTTTGCTACTTA
TATACTCCCACAAATTCCGCTACATTGCGGTTGTCGAATCCAGGTTAGGTTGCTTTGCTGTGATC
CGCCGCTAACTCCAAGGTGATTGCTTCCACATTCCCCGCTACACCACCGAGTCACCACCTTCACA
GAGACAGAATTGGTTCGGAAAAAATCCAGACGTACTCTATGCATT
Found at i:361117 original size:20 final size:20
Alignment explanation
Indices: 361088--361125 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
361078 GCTACTATGG
*
361088 CAATCTACCGTCATAACAAT
1 CAATCGACCGTCATAACAAT
361108 CAATCGACCGTCATAACA
1 CAATCGACCGTCATAACA
361126 TTAAGTGGTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.39, C:0.32, G:0.08, T:0.21
Consensus pattern (20 bp):
CAATCGACCGTCATAACAAT
Left flanking sequence: Indices 360588 -- 361087
TATATATTACTATGGAGGGAGTATAAAATAAGTTTATAACTTCATGTGGTCGTACTACCACCACA
TCAGTAGGTTGGACTCAACCACACTTCAATTTTGCAGCAAAAGTGCGCTACCGTCTTTCGCACGC
AGCCGTCCACAGTTGGTCTCTGGGGGCGCGCACGCACTCGTGTACAGTCAACGTTTATCGCAATT
AATCTATCCACCACTGTCTAACTTCCCATATCAATCATGAGTTTGTCAGACGAACAGGTAAGTTA
TTGCAAAGGGGAGGCATCATACTGACGGAAGGATCCATAGTCCTTTGTCAGGTCGATTGGCACTG
TCACAGTATCAAGAGCGGGGTCGTCATTCACAGAACACCACCACCTATCGCATCATTTGAGGTCA
ATTGAACCAAGAGACACGATTGTGTATGGTTGATTCGTGGAATCCAAGCTCCGATTCTCTTGTTT
CGAGGGACGTGGTCAACACACCCTTATCAATGATTGCTACTATGG
Right flanking sequence: Indices 361126 -- 361625
TTAAGTGGTTCGGTTGACTTGCATTCAAGTACACCTTATTGGCCTAAGTTCCCCAATCCCACCAA
TATTTCAATTACTAACTTAATGTAGGTCAAGCTGGAGCTTGCCAAGATGCAAGGCTTTATCAAGA
AGGAGGCCGAAGAAAAGGCGAAGGAGATTCGGCTCAAAGCAGATGAGGAATATGAAATTGAGAAG
GCACTGATTGTCCGCAGCGAGCTGGCAGCAATTGATGCCAGTTACCAACAGAAGCTCAAAAAGGC
TCTGCTTGCTCAACAAATCCAAAAGTCAACGTTGGCAAACAAGACGAGATTACGCATTCTTGGCA
CAAAGGAAGAGGTGTTGGAGGATTTGTTTGAGGACGCCGCCAAAGAGTTGGAGAAACTTGTGAAG
GACGACAAGCGTTACGGCGCTGTGTTAGCGTTATTGATTGAGGAGGGGTTGCTTGCATTGTTGGA
ACCCACTGTCAATGTTAACGTACGCAAGGTTCACGTTGACTTGGC
Found at i:368847 original size:36 final size:38
Alignment explanation
Indices: 368807--368880 Score: 98
Period size: 39 Copynumber: 2.0 Consensus size: 38
368797 GACTCCAAGT
*
368807 CTGACGACAAGGAC-GG-CGATGACGACAAGAAGACCA
1 CTGACGACAAGAACAGGACGATGACGACAAGAAGACCA
* *
368843 CTGACGGCAAGAACAAGGACGGTGACGACAAGAAGACC
1 CTGACGACAAGAAC-AGGACGATGACGACAAGAAGACC
368881 GACTCCAAGG
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
36 12 0.38
38 2 0.06
39 18 0.56
ACGTcount: A:0.39, C:0.24, G:0.31, T:0.05
Consensus pattern (38 bp):
CTGACGACAAGAACAGGACGATGACGACAAGAAGACCA
Left flanking sequence: Indices 368307 -- 368806
CTCGGTCATTGCTGCCGACTCCGAGTCTAAGGACGCTAAGGAGGGTTCCACCAAGGACGAGGAGG
TTGTCACCCCCACCAACACCGCCAAGTCGGTCGCTGTCGAGACCATCTCCGGTGAGGAGGATGCC
ATCACCGTCACCGTTGACCCTACTGGCACTGGTGTTGACATCAACCAGTTCTCCGCCTTGTACAA
CGGCCCTTACTCCTCCGACATGGTTTCCTACGCTCTGTACCTCGCTGGTGTTGGTTTCGATGCCT
CCAAAATTGAGCTGATGTTGACCAAGGCTTACCGTTACGGCTCTGACCAGATCCAGGACCAGTCC
TCGTACGACAGTGCCTTGTCCCAGTGGGTCATTGTCCAGGATGCCGACGTGTCTGACCGTGCCAC
CAGATCTTACTCCTTCAAACCCGAGGAGACTGAGTTGATGACTTTCTCCGACGAGGAGGCCGCCT
CGAGATACTTGGCTACCCACAAGGAGGGCGACGACGACTCCAAGT
Right flanking sequence: Indices 368881 -- 369380
GACTCCAAGGACGGTGACAAGTCCAAGTCCGACGGTGGTGCTGACTCCACTGACTCCAAGTCGGA
GAAGGACGGTGCTATGTCGTTTGCTGCCCCCATCGGTGCCGCTCTCGGTGCCATTGCCGTGGCTT
TGTTGTAAGTGGACTAGACGCCACTAAACTTTGAGCTAGCGCCCTGTTTATGGCAGGTCAGCTGC
TTCCGTGTTTTATACCTATGGATTGGGTTACTTAATCATAATAATGAATAATGATAGAATTATCG
TAGAACCATGCGATGGTTGCCATATATACCTATTATCCGTCCTAGCGGATGAACTTGAAGTACAC
TACCAACATCAAGAACAACGACACCCCACCAATGACGGCGTACTGCTTGATCATTGCGTCTAGAT
TGATGCGTTGGGCGCGCTTGCGGTATTTGAGAGAGTCACTCTTCAACAGAGATGACAAGTCCGAC
ATTTTGTCCAACAGATCCCCCCGATACAACAAGTCTTCGATGTTC
Found at i:381762 original size:15 final size:15
Alignment explanation
Indices: 381742--381771 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
381732 CGTGGTGACA
381742 AAGCTCGCAGACACC
1 AAGCTCGCAGACACC
381757 AAGCTCGCAGACACC
1 AAGCTCGCAGACACC
381772 CGTGCCCCCT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.33, C:0.40, G:0.20, T:0.07
Consensus pattern (15 bp):
AAGCTCGCAGACACC
Left flanking sequence: Indices 381242 -- 381741
GCCAGCCACGGCCGCGGGGGTCGGCGACAAATCAAAATAGCCGACAATGGCGAATGGGCTGGCCA
TCCGTTGGGGCTTGGTCTCGACTCAAGTAGCTCGTAATTTACGACCCATTTACGTTGATTGACTT
GCAAGTGCAATTAGACCAATATGCTATCTCTGGTTTCAAACAGCTGTTGCATTCCCCTACAGATC
TTGATCAGGTGTACCTTGCATCCTGATGGGAGCGCAAAAGCAACGTGAATCCCGGTCCATACGCC
GACACGTACTGACACGTACCGGTGTGGTTAAATTAGTAGACTACACGAACCGTCACTTGAGGGCG
TTCTTCATTTTGTAGCGATGGTACCCGACAGTCCTGGGGCAAATAGCTGAGTAGACTCAAGAGCC
GCACGCACCGCTTGAGATTGTCCAAACCAGAGTAGTGTTACCACCCAAGCTACAAGATGGGGTTA
CGAGAAGACACATTGCTTCTCCAATTGAAGAATGCCGTGGTGACA
Right flanking sequence: Indices 381772 -- 382271
CGTGCCCCCTCTGCACCGTCAATCGGGCGCAAGGAGGAGTCCAGATACCCCGACGAGAAGGTGTT
TTACCATGGTGAAGCGCCGTGGGACCAAAAACCGGAGGGCCAGCGCACGAAGAAACGGGTATTGG
TGCCTGCAATTGTCGCGCTTTCACTCTGTGCCTTTTACGGAGTTCGCCACCTTTGTTGAAGACAC
AGCTATTCGCCGAGCAGAGACAAAACCCAGCATAACATGTTCTTATGGCGACCATGACACCCCTT
GTGACCGAGAACGCTTCCCCGGATCCTCTATCATGCCGTCCCTAACTTTGAGGACCACATTTATA
GAAGTCAAATTACATGCATGATTGAATCACATTGGTGTGAATTGTAGAGACAGCCAGACCGGACT
GATCGGATACGATACTACAGACGAAAAGCTGCTCAACACACCCATATTTTCAATAGCTCGTTTGT
CTTGGTGTCTTTTGTGTAGTTTTGTAGCAAGCACGGCGCAAGTCT
Found at i:393258 original size:21 final size:21
Alignment explanation
Indices: 393234--393273 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
393224 GATCCCGACT
393234 ATGACGAATATGACTACGAAG
1 ATGACGAATATGACTACGAAG
* *
393255 ATGATGAGTATGACTACGA
1 ATGACGAATATGACTACGA
393274 CGCTCAATAC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.40, C:0.12, G:0.25, T:0.23
Consensus pattern (21 bp):
ATGACGAATATGACTACGAAG
Left flanking sequence: Indices 392734 -- 393233
GGAAGCCACCTCCCACGTGCTTGTCGAGAAGACTGGAAAGAAGGGGAAGATCGGCCGTCTGGCCG
TGGTGACAAAGTCTGAGCTCGACCAGGAGCTTGCAAACGCAATTTCCGCCAACGAAGGTCAGGCC
GCTCAGTACGGTATTATGTTCGATGATTCCAAGTACAACTACATGCAGCATTTAAAGCCTATCGG
CGAGGGTGACATGTTCATTGAAGCCCAGGGCGACAAGAAAAAGAAAGAACTTGATCTCGATGAAT
TATTTGACGACAGCCAGTTGCCTCAGGAGGCACAGCGTCCCCGTGGGTTTGTACCCCGCACCGAT
GTCTACGAGTCGATTCCGCTCGAATTACGTGGGTTCCAGCCCGATATGGACCCGCGATTGCGTGA
AGTGTTAGAGGCTCTTGAAGACGAAGAGTATGTCGAAGAGGAAGCTGGCGACATGTTTGATGATT
TGTTAGATGGCGGTGAGGCTGACGAAGACGACTTTGATCCCGACT
Right flanking sequence: Indices 393274 -- 393773
CGCTCAATACGCTAACTACACGGAGCCCGCAGACCACCAAGCACTTTATAACCCTGGTGAGGCCC
CTGAGGATTTCGATGCCCCCTATAACCCGGGCGAGGCCCCTGAGGACGTTGCGGCTCCGGCGATG
GACTGGAGCGATTTTGCCAAGTTCAAAAAGGAGACCAAGAACGAAACAAATGACTTTGACTCTGA
TGACGACTTCGAGGACGAAGAGGAAGACGCCGTGGGAGACTTGCCGAACATCGCCGGTAAGAAGA
ACAAAACGAAACAGCGCAAGAAAAAAGGTGCCATGACCGATACCCTGTCGTTTTCGATGTCTTCC
CTGGCCTTATTCCGCACCGAAGGGCTTGCTTTGTTGGATGACCGGTTTGAAAAGATTGCCAAAGA
CTATGACGCTCCCGAGAAGGAAGAGGACTACCAGGAATTCAAGATGGAGAACGAGCGAGGTGACC
TCGAAGACCTTCTTGACGACTTCTTGGACAACTTTGAGCTTGAGG
Found at i:470638 original size:13 final size:13
Alignment explanation
Indices: 470620--470647 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
470610 GGCGCAGCGT
470620 GGTATTGTTGGCC
1 GGTATTGTTGGCC
470633 GGTATTGTTGGCC
1 GGTATTGTTGGCC
470646 GG
1 GG
470648 CAACGGGCCT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.07, C:0.14, G:0.43, T:0.36
Consensus pattern (13 bp):
GGTATTGTTGGCC
Left flanking sequence: Indices 470120 -- 470619
GCCGTGGGCGTAGTACCCGCGTGGCAGGGTGCCTCCGCGGAGGGTGCTGAGGTTCTGGTTGGTGA
GGGGGAACTCGGTGTTGCGGCGGTTCATCCGCCGGCTCTCGTGTGACATCTCCGATGGGGGTCAC
TTGTTCACGCCGCTGGTTACCTCGAGATCAATCGCGACAACCGTACCTTAATTCTCACAGTATTT
GCGCTTGGTTGCCGTGGGCCGGTATATAGGCGATGGTACATCTGACTCGCGTCAGGGCTGCCGGG
GACAGTGGCACCACGCGCCAGCGCAGTGGCCCGCCGTGAAGCCGCCCAGGTTGCCGTCCGGCGAC
AGACACGTGGTGCTTTTCTACTGCTTGAGCGGCCTCCGGGTCGTTCCCGGGTGGTCACCGGGCTT
ATCTTGGGGCCAGGGATCGCAACCTCGCTAAATTTTCACCGTTGTCAACGGGACGGGCGTGGGGC
TTTGTGCGACATCCGAGCGGGAGGGTTGCCAAATGGGCGCAGCGT
Right flanking sequence: Indices 470648 -- 471147
CAACGGGCCTGTGGCTATTGTTTGGCGGTGGGTCTCGCTTAGCCGTGTAACCGCGCATTGCCATG
CTAAAAAATAGATCAATACGCCTGCGGACAAGCGTTTTCTTTGTGGCACTTGCTGGGGGCTTTGA
TGAGTCGAGCAGCTGGGCTTGGGCCTGGTGCTTCGACCAAAGAAACCTTCGCTTGCTGCTCGATC
AGCGAACCCTTGCAGATTCTTGGCTGCTCTGGGCAACCTGTCGTGTGCTCGTTATGCGCCCACCT
GTATCGCGGGGTATCCATGCATGTATTAGTCTATAGTTAATTCGTTGATGATGTCTTCCGCCAGG
TAGCGGTTGCCCAAGGGCTGTCTCTCGGTGTTTTCGTGCACAGGCCACGTCATCCCCGGGGCAGA
GCCTCGCAAGGTGACGATGCAACCGTAGCACAAGTCCACCGGGGTGTCGAGCTGGGCCTCGGGCT
GGGTGTGGGCAGCAAGGTAGGCCTCGTAGTTGGCGCGGTCCTCGT
Found at i:472373 original size:16 final size:16
Alignment explanation
Indices: 472349--472398 Score: 64
Period size: 16 Copynumber: 3.1 Consensus size: 16
472339 GAAAACTTTG
* *
472349 GTTAGTGGTATCTTGA
1 GTTAATGGTACCTTGA
*
472365 GTTAATGGTACCTTGG
1 GTTAATGGTACCTTGA
*
472381 GTTGATGGTACCTTGA
1 GTTAATGGTACCTTGA
472397 GT
1 GT
472399 GGTACCTTTC
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
16 29 1.00
ACGTcount: A:0.18, C:0.10, G:0.32, T:0.40
Consensus pattern (16 bp):
GTTAATGGTACCTTGA
Left flanking sequence: Indices 471849 -- 472348
ACAGGGGCAAACCGCGCCAACATCCGCGCCAACTCATCCGCCACCGGCTTATCGCGGTCCTCCTG
CTCGATCACCACCACTACCACCTCGTAACCGGTACGTCCCTGATAGTTCTGGTGCTGTTCCAAAA
GCATCGATCCCACGCAGTCGGCCAACACGAGGGAGCTGAGCCCGCCCGACACCGCGAGAAGCACC
CGTGTCTTGGTGTTGACCGGCCCGTTTTTGTCGTAGCGGACTTTGTAGCGCTCGGAGAGCATCAG
CTTGCGTTGTTTGCCGCGAATGAAGCGGACAAAGCACTCGCCACAGTAGTTGTCTTTGCGGGCAT
TAAGCACCGCGGGGTGTTCTTTGCACCGGTCGCAAACGACGTCGTGGCCTTCGAGCCACTCGATC
GCTGACAACGGCATGGAAGGTGGTGTTTGCAGCCGCGAGATGCCCCTGCAGATAGCTATGAAGTG
TGGTGGAATGATAGAGGTGATAGTGACAACTGAATGAAAACTTTG
Right flanking sequence: Indices 472399 -- 472898
GGTACCTTTCTAGTTGACTTGACGTTTATGTGTCTTCATTTCACGTTGACCTTCTCTCTTTTTAG
ATTCAGGTGGTCGAGTCTTACTAACCACACGGTGTTCATTCCGCTATGACAGATTGTTGCAGAAG
TAACCCTACAGATCACCCCGTCTCCATCTACACCACCACCCTCGATTCACACACCACCAAATCCG
TCTACTGTCCTTATTCCGTCTACTGTCCTTGTCCCTGCCAACGTCACCCGTGATCTTTTCGCACT
GCGTAATCACACCAAAACCCGGGCAACCATGAGTGGAGAGCCAGAACCCGCGAGCGCCGTGGACG
CCAAGGCCACCCCTGAAACCCCAGCCAAGCCGATCCCCGACCGCATCAAAAACCACAAGTTCGAC
AAACTCGACGATGGCGAGGTCGAGCTCGACAAGACCAAGGTGTCGTTCACCAAGGACGGCGAGTA
CAAGTTCTACCCCGACAAACCGGAAAACCACCGCCACAAGTACCG
Found at i:473251 original size:30 final size:30
Alignment explanation
Indices: 473216--473289 Score: 139
Period size: 30 Copynumber: 2.5 Consensus size: 30
473206 TAGTGCCTGT
473216 TGTTGTAATAGTCTACTGTTGCAATGGTGC
1 TGTTGTAATAGTCTACTGTTGCAATGGTGC
*
473246 TGTTGTAGTAGTCTACTGTTGCAATGGTGC
1 TGTTGTAATAGTCTACTGTTGCAATGGTGC
473276 TGTTGTAATAGTCT
1 TGTTGTAATAGTCT
473290 CTACTATTGC
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
30 42 1.00
ACGTcount: A:0.19, C:0.12, G:0.27, T:0.42
Consensus pattern (30 bp):
TGTTGTAATAGTCTACTGTTGCAATGGTGC
Left flanking sequence: Indices 472716 -- 473215
CGTGGACGCCAAGGCCACCCCTGAAACCCCAGCCAAGCCGATCCCCGACCGCATCAAAAACCACA
AGTTCGACAAACTCGACGATGGCGAGGTCGAGCTCGACAAGACCAAGGTGTCGTTCACCAAGGAC
GGCGAGTACAAGTTCTACCCCGACAAACCGGAAAACCACCGCCACAAGTACCGGTGGTCGTCCAA
GGAGGCAAGCAAGTTCTACGACCCGTGCGAGCAGCTGCGCCAGGCGTCGATGGACTGCGTGTTGC
GCAACCGCGAGGACCGGTTAGTGTGCCAGGAGTTCTTTGACGCCTACCGCGAGTGCAAGAAGGAT
TTCTTCCGCAAGAAGAAGATGGACAAGCGCGACGGCGTCAAGGGCTGGAACTTCTGGCGGTAGCC
TTGCGGTGTCGCTAATAGTTAGGTAGTGTCAATTCTGGGGATCTAGTGTCTTGCGGTATTGTCTA
CTGTTGCGATGTTGCAATAGTGTTCACTGTTGCGATAGTGCCTGT
Right flanking sequence: Indices 473290 -- 473789
CTACTATTGCAGTAGTGTCTATTGTCTAGTGGTGTCACTAGTGTCTTGTCTGTGTAGTGGGATCG
ACCCACATCGTGTATATAGGGTATCATTTACATCGTTAAATCATTTCGTACTCGGGCTGGCCGCT
GCCAAACGCACACCGCCCGTCCACCATGCCCACGAGATTGAGCACGTCGGAGCCCGCGTCGGGCT
CGGCGGGTTCGGCGTCGCTGTCGTCGCCGCCAAGACCCGCGAGATCGTCCACGAGCTCGTCGTTC
GGCGAGAACATGCGCTCGCGCGAGGTGGCCGTCCACGTACGCGAGAGCCCGAGGCTGGTTTCGGT
GTGACTGAGGCGGTTGTTGAGGAAGGGGAGGGTGTTGTGCACCTGCACCTCGCCGGTCTTGCGGT
TGAGCGAGCACAACAACACCGTGGTGCTCACCGGCCGGCGGGTGTGGTAGCGGTAGAGGTGGTGG
GTGGGCTCGCGCCCGTTGGTGGCGTACAGCGCCTCGTCCGCCGCA
Found at i:481153 original size:14 final size:14
Alignment explanation
Indices: 481134--481162 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
481124 ACTGCCGTTG
481134 TTTTGTTGCACTAC
1 TTTTGTTGCACTAC
481148 TTTTGTTGCACTAC
1 TTTTGTTGCACTAC
481162 T
1 T
481163 GTTGCTGCTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.14, C:0.21, G:0.14, T:0.52
Consensus pattern (14 bp):
TTTTGTTGCACTAC
Left flanking sequence: Indices 480634 -- 481133
GCTGGCTTTGTGCCCATGACCTGCCCGTGCACTACTTGCTGATCTCGTTGTGCGTCGGAGCCCCA
TACTTCCGTTCTTGGAAACCATAACAATGCAAGTGCTAACGCGAGTAATTAACCAAAACGATCAA
ACACAAGGACCAAAAGCGGTCTAGCCCGTATAGAGAGTCTGTCACGCTATGCACCAACCAATTGT
GTCACGCCCCGTCGACCAATAGCCACCCGAATCTCAGATCAACCCAGATCGCTGCACGTCAACCA
GCGCACTATTTTTGTGCGAATTTCAACCTTTGCAGCCCAACGCAGTCAGCCAGCCAAGCACCAAA
ACACGTAGAACAGTATAAATAGCGGGCGTTGCAGCGGTTATTCTTCACTCATCTCAACTGGCTTT
GCCTCTCTCCTCTCCCGGTATTGGGTTGACGCGGCGACGGGACTGGTCCTCTCGTCGCTGTGGAC
AATCAGGTCACTCTACCGCGAGAGGAAGGGTGTGCACTGCCGTTG
Right flanking sequence: Indices 481163 -- 481662
GTTGCTGCTGTTGATCTAGACGCTGAACCTATTCAAACTCGCCGGGCACCTGTTTTGACACCTTG
AGGGGGGTGTCTCAACACCAAGGTGCCCGGCCCATTTCGTTCCTAAACAAAAAAACCCAAAAAAA
TATTCAATTCAATTGCTTTTCCGCCCATGCCCGGTCTAGCAACGCTCTGCGCATCGGGCGTCCCG
ATGTCGTACATTCAAGGCACCAATTGGTCACTGGTGTCTTAGTCCTTTCCTGGAACAGCGGGCCC
AGGGAGCTCTACTGACAAACCGTGGCGGCCACCCGTTAGCACCTTCTCGTTAGTGGCGAGACGCA
AACCGTGACCCCACCTAGTATTGTTACCCCTGACCCCGCTGCCGCTTGGACGTGGACGCGCCGGT
GCGCGAGCGACGCGAACCCGAGGCCTCGGGGCCCAACATGAAAACATATATACTGGAAATAAAAA
ACTTGCCTAAAACGCCAAATTCACTTCTGTAACCGCCGCTGGCCC
Found at i:492701 original size:9 final size:9
Alignment explanation
Indices: 492687--492783 Score: 140
Period size: 9 Copynumber: 10.8 Consensus size: 9
492677 AGTCCTTCTT
492687 CTTCTTGTC
1 CTTCTTGTC
*
492696 CTTCTTCTC
1 CTTCTTGTC
492705 CTTCTTGTC
1 CTTCTTGTC
*
492714 CTTCTTTTC
1 CTTCTTGTC
*
492723 CTTCTTCTC
1 CTTCTTGTC
*
492732 CTTCTTTTC
1 CTTCTTGTC
492741 CTTCTTGTC
1 CTTCTTGTC
*
492750 CTTCTTCTC
1 CTTCTTGTC
492759 CTTCTTGTC
1 CTTCTTGTC
*
492768 CTTCTTCTC
1 CTTCTTGTC
492777 CTTCTTG
1 CTTCTTG
492784 GCGGGCTTCT
Statistics
Matches: 78, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
9 78 1.00
ACGTcount: A:0.00, C:0.37, G:0.05, T:0.58
Consensus pattern (9 bp):
CTTCTTGTC
Left flanking sequence: Indices 492187 -- 492686
TGACAATGACATGGCCTGCGACTTCTGGGCCGGGCTCCGCGAGACTCCGGTCGAGCAGCAGCCGT
CAAAGATAGTGGGGGTGTTCGAGAACATGCAGGCAGTGGACTATCTCGACGACGATGACGTGACG
CCGACGCAGGTGTGTGCTGTGGTTGTGTTGGCGATTGCAGACCCCGCATGGTTTGCCCAGTACAC
CCACATCAATGACTACTTCCGCAAACAGGTGAACGAATTTGTTGCCAATTTCCCCAAGGTGTGGG
AAGGCAATGATCAACCCAAGTACAAAGACGGCAAAACCGTTTTTGAGTGGGCCTTGGCGGCCATG
GACCTCGCCACCAGCCCCGAGTCGGAGACTTACGAGTTGTACGAGGGCAGTGAGCAGTGGCTTGC
CAGCTGCGACGAGCTCAAGACCCAGTTGCGCAAGTTTGTCTAGTAATACGTCGTTGTTTATTCAA
TAGTTAATGTACACGGGAAATGGGGTTGAACGATTAGTCCTTCTT
Right flanking sequence: Indices 492784 -- 493283
GCGGGCTTCTCGTCCTCGTCCTCGTCGTCGGACTCGGCCTTTCTCTTCTTGGAAGGCTTCTCCTC
CACCTCGTCGATGAGGTCGCCCATCAGCACACCGGCCAAGGCCACGGCCTCCTTGATGGCGTCGG
CGTTCTTCATGGGGGCGGCACCGGTGTCGTAGAAGTTCAATCTGTCCTCAACCTGCTTTTTGAGC
ACTTGACCGTAGGCGGTGGTGGGGACGTCGGAGTAGTTGTCAATTCTCGAGGCAAGCGAGCACTT
GTTGGCCAAGTACCGCGAAATTCTCCCCTTGTTCTTGGCAGAGGCCTTGCCAATGAAAGACGAGT
GGTAGATCAACCCATACTTGGGGGTGTTACCCTTGGTCTTGAGGGCTCTGAACAACGCCTTCTCC
GCACCGAGAATCTGCACGGTGGAAGCGGCCTGCTTGGACAAGTTGGTCAACGAACCGGCGTGCGA
GATCAACCGGGCACCCACCACCTCACCAATGAGGGTGGACAAGTT
Found at i:492708 original size:18 final size:18
Alignment explanation
Indices: 492681--492783 Score: 170
Period size: 18 Copynumber: 5.7 Consensus size: 18
492671 ACGATTAGTC
*
492681 CTTCTTCTTCTTGTCCTT
1 CTTCTCCTTCTTGTCCTT
492699 CTTCTCCTTCTTGTCCTT
1 CTTCTCCTTCTTGTCCTT
* *
492717 CTTTTCCTTCTTCTCCTT
1 CTTCTCCTTCTTGTCCTT
*
492735 CTTTTCCTTCTTGTCCTT
1 CTTCTCCTTCTTGTCCTT
492753 CTTCTCCTTCTTGTCCTT
1 CTTCTCCTTCTTGTCCTT
492771 CTTCTCCTTCTTG
1 CTTCTCCTTCTTG
492784 GCGGGCTTCT
Statistics
Matches: 80, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 80 1.00
ACGTcount: A:0.00, C:0.37, G:0.05, T:0.58
Consensus pattern (18 bp):
CTTCTCCTTCTTGTCCTT
Left flanking sequence: Indices 492181 -- 492680
CCCATTTGACAATGACATGGCCTGCGACTTCTGGGCCGGGCTCCGCGAGACTCCGGTCGAGCAGC
AGCCGTCAAAGATAGTGGGGGTGTTCGAGAACATGCAGGCAGTGGACTATCTCGACGACGATGAC
GTGACGCCGACGCAGGTGTGTGCTGTGGTTGTGTTGGCGATTGCAGACCCCGCATGGTTTGCCCA
GTACACCCACATCAATGACTACTTCCGCAAACAGGTGAACGAATTTGTTGCCAATTTCCCCAAGG
TGTGGGAAGGCAATGATCAACCCAAGTACAAAGACGGCAAAACCGTTTTTGAGTGGGCCTTGGCG
GCCATGGACCTCGCCACCAGCCCCGAGTCGGAGACTTACGAGTTGTACGAGGGCAGTGAGCAGTG
GCTTGCCAGCTGCGACGAGCTCAAGACCCAGTTGCGCAAGTTTGTCTAGTAATACGTCGTTGTTT
ATTCAATAGTTAATGTACACGGGAAATGGGGTTGAACGATTAGTC
Right flanking sequence: Indices 492784 -- 493283
GCGGGCTTCTCGTCCTCGTCCTCGTCGTCGGACTCGGCCTTTCTCTTCTTGGAAGGCTTCTCCTC
CACCTCGTCGATGAGGTCGCCCATCAGCACACCGGCCAAGGCCACGGCCTCCTTGATGGCGTCGG
CGTTCTTCATGGGGGCGGCACCGGTGTCGTAGAAGTTCAATCTGTCCTCAACCTGCTTTTTGAGC
ACTTGACCGTAGGCGGTGGTGGGGACGTCGGAGTAGTTGTCAATTCTCGAGGCAAGCGAGCACTT
GTTGGCCAAGTACCGCGAAATTCTCCCCTTGTTCTTGGCAGAGGCCTTGCCAATGAAAGACGAGT
GGTAGATCAACCCATACTTGGGGGTGTTACCCTTGGTCTTGAGGGCTCTGAACAACGCCTTCTCC
GCACCGAGAATCTGCACGGTGGAAGCGGCCTGCTTGGACAAGTTGGTCAACGAACCGGCGTGCGA
GATCAACCGGGCACCCACCACCTCACCAATGAGGGTGGACAAGTT
Found at i:492724 original size:27 final size:27
Alignment explanation
Indices: 492687--492782 Score: 165
Period size: 27 Copynumber: 3.6 Consensus size: 27
492677 AGTCCTTCTT
492687 CTTCTTGTCCTTCTTCTCCTTCTTGTC
1 CTTCTTGTCCTTCTTCTCCTTCTTGTC
* *
492714 CTTCTTTTCCTTCTTCTCCTTCTTTTC
1 CTTCTTGTCCTTCTTCTCCTTCTTGTC
492741 CTTCTTGTCCTTCTTCTCCTTCTTGTC
1 CTTCTTGTCCTTCTTCTCCTTCTTGTC
*
492768 CTTCTTCTCCTTCTT
1 CTTCTTGTCCTTCTT
492783 GGCGGGCTTC
Statistics
Matches: 64, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 64 1.00
ACGTcount: A:0.00, C:0.38, G:0.04, T:0.58
Consensus pattern (27 bp):
CTTCTTGTCCTTCTTCTCCTTCTTGTC
Left flanking sequence: Indices 492187 -- 492686
TGACAATGACATGGCCTGCGACTTCTGGGCCGGGCTCCGCGAGACTCCGGTCGAGCAGCAGCCGT
CAAAGATAGTGGGGGTGTTCGAGAACATGCAGGCAGTGGACTATCTCGACGACGATGACGTGACG
CCGACGCAGGTGTGTGCTGTGGTTGTGTTGGCGATTGCAGACCCCGCATGGTTTGCCCAGTACAC
CCACATCAATGACTACTTCCGCAAACAGGTGAACGAATTTGTTGCCAATTTCCCCAAGGTGTGGG
AAGGCAATGATCAACCCAAGTACAAAGACGGCAAAACCGTTTTTGAGTGGGCCTTGGCGGCCATG
GACCTCGCCACCAGCCCCGAGTCGGAGACTTACGAGTTGTACGAGGGCAGTGAGCAGTGGCTTGC
CAGCTGCGACGAGCTCAAGACCCAGTTGCGCAAGTTTGTCTAGTAATACGTCGTTGTTTATTCAA
TAGTTAATGTACACGGGAAATGGGGTTGAACGATTAGTCCTTCTT
Right flanking sequence: Indices 492783 -- 493282
GGCGGGCTTCTCGTCCTCGTCCTCGTCGTCGGACTCGGCCTTTCTCTTCTTGGAAGGCTTCTCCT
CCACCTCGTCGATGAGGTCGCCCATCAGCACACCGGCCAAGGCCACGGCCTCCTTGATGGCGTCG
GCGTTCTTCATGGGGGCGGCACCGGTGTCGTAGAAGTTCAATCTGTCCTCAACCTGCTTTTTGAG
CACTTGACCGTAGGCGGTGGTGGGGACGTCGGAGTAGTTGTCAATTCTCGAGGCAAGCGAGCACT
TGTTGGCCAAGTACCGCGAAATTCTCCCCTTGTTCTTGGCAGAGGCCTTGCCAATGAAAGACGAG
TGGTAGATCAACCCATACTTGGGGGTGTTACCCTTGGTCTTGAGGGCTCTGAACAACGCCTTCTC
CGCACCGAGAATCTGCACGGTGGAAGCGGCCTGCTTGGACAAGTTGGTCAACGAACCGGCGTGCG
AGATCAACCGGGCACCCACCACCTCACCAATGAGGGTGGACAAGT
Done.