Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: C11039
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 197956
ACGTcount: A:0.23, C:0.26, G:0.27, T:0.24
Found at i:3279 original size:15 final size:15
Alignment explanation
Indices: 3259--3287 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
3249 CAGACACTAC
3259 ACCACCTAAACACCT
1 ACCACCTAAACACCT
3274 ACCACCTAAACACC
1 ACCACCTAAACACC
3288 CGCTGCACGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.41, C:0.48, G:0.00, T:0.10
Consensus pattern (15 bp):
ACCACCTAAACACCT
Left flanking sequence: Indices 2759 -- 3258
GGTTCGGTAAGAGTGGGTGGGAGAGCAGTGTTGTGGTGGTCGGTCAGGGGTTTGGCGGGTGCCTG
CGTCACATGGGTTACAGGGGTTGTAGTGACGAGGTAGTAGGCGGGGTGAGTGGAAGGCGAGAGAG
GGAAAGGGGTGGATGCGTAGTTACGTGTGTGCTTACTGGTTGTTGGGTAGGAATTGTGGTGTGTC
GTAGTGTGGGGAATGGTTGCGTGGAGTCCGTGCCTCGGACTACTAACATTCCGCGGAGTAGCGAA
TTTCCTTAGTAGGGCTACAAAGGGCCGATAGGGTGGTTTAGAGTTTAGGGTTCAAGGGTCCGAAT
GGGTGAGATATGGACAGGAACAGAGAATGTGGATGATGTTCGGTAGAGAATGCTTCAATGCTTTA
AAAGTGCTGAGTGTCCGTGATTGACATCAGTACCTCATTGTATGTACATATTGCAGCCAGACACT
ATGGGCACAAGCACATAGTACGCTGCTAACCCCAACAGACACTAC
Right flanking sequence: Indices 3288 -- 3787
CGCTGCACGTAACAATCCACCAACCCACCACCCACTTCCACCTTGTCCTCTAACATTCATACATT
TCTACTCAAGCTTGGTACCCTTGACCACGTACTTCTGGCGCAACTCCTCAAACCCCTTGGTCAAC
TTGAACTTGGTGATCAAGATCTTCTCCAACACAAACCGCGGGCACCACCACAAGATCGTGCCCAT
CAACGTAGCCATGGTGCCACGCAACCGGATAAACGACCCGTTCACCAGGGTGGCCCGGGAAATGT
CGTTGGCCACCTGGCGCGCGTACACCTCGGGCTTCATGGGGCTGTTCTCCTTGGCCATCACCTTG
CGGGCCTCAAACAGCAGCAAGAGCGTCGGGGTGTTGTACAACGAGTCCTTGGGCAACGGACGGGT
GTCGGCAATGTTGGTGTCGACGCCTCCGGTGACAATGTTGAGCACCTTGACGTTGAACGGCTTCA
TCTCCAACCGCAACGTGGCGGCGTACTGGTTGATGGCGGCCTTGG
Found at i:48838 original size:9 final size:9
Alignment explanation
Indices: 48785--48820 Score: 63
Period size: 9 Copynumber: 4.0 Consensus size: 9
48775 CAAAGCCGCC
48785 GCCGCCCAT
1 GCCGCCCAT
48794 GCCGCCCAT
1 GCCGCCCAT
48803 GCCGCCCAT
1 GCCGCCCAT
*
48812 GCCACCCAT
1 GCCGCCCAT
48821 ACCACCGCCC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.14, C:0.56, G:0.19, T:0.11
Consensus pattern (9 bp):
GCCGCCCAT
Left flanking sequence: Indices 48285 -- 48784
TTGTAGTTTATGATCAAGTCACCCTTGCCGCCGGGCGCTTTCAGAATCGGCATACCCTGGTCAGG
GTACCGCAACTTTGTGTTGGGCTGCACGGGGATGCTGCGCAGGATGGGGATCTTGCGCCCATCGA
TAGTGTTCACCTCCTTCGAGAACCCGAGAAGCGACTCCTTGAACGTCAACGGCAAGTTCATCACC
AAGTCGTTCTCTTCGCGCTTGAACACGGGGTCGGGCTTCTCCTCCAACACAAACTGGATAGTCTG
GCGCGCCTGGCACTCCGACTGCCAGTCACCCTCGTTCTTGAAGGTGATCTTGGTGCCGGCCTTCC
AGCCGGGCTTGATCTTAATCTCGATGATCTTGGGCTCGCGGTTGCCACTGGCGTCCTTGCGCAGA
AGCTTCAACTTCTTGGTGGCGCCCTCGTAGATCTCCTTGAGGGTGGCCTTGAGGGGAAGAGTCAC
GGTGTCCGGCTCGGGACGACGGGCCGAGCGACCGCCAAAGCCGCC
Right flanking sequence: Indices 48821 -- 49320
ACCACCGCCCATACCGCCAAAGGAGTGGCCACCGCCAAACCCGTAGTCGTCACCACCTCCCATAC
CGAAACCACCCATCTGGGAGAAAATGTTGAAGGCATCTGCCTGGGAGAACCCGCCCCCACCACCG
CCGGTGCTAAAGTGGAACTGGGGACCACCGGCGCCACCGGCACCAGCGAACGGGTTGCCACCCTC
GGGCCCCAGCGGCGCGTTGCCCCGAGCAGCCTCCAACCCGTAGTCGTCATAAATCTGGCGCTTGT
CCAGGTTCAGCAAAATGTCAAACGCCTCGGAAATCTCTTTAAACTTCTCCAGCGCCTTTTCCTGG
TCGTCGGGATGCTTGTCAGGATGCCATTTGAGCGCCATTTTGCGGTACGCCTTCTTGATCTCGGC
GTCGCTGGCCAGCGAGTCGACGCCCAACAAGTCATAAAGCTTGGTGTCTTTAACCATCTTGGCCT
TTTTCTTAGAATAACTGTCTTGACGTGAGCGCTTCACCTTCGATG
Found at i:51241 original size:11 final size:11
Alignment explanation
Indices: 51210--51266 Score: 62
Period size: 11 Copynumber: 5.2 Consensus size: 11
51200 TCATAATCAT
* *
51210 CCTTCTAAACG
1 CCTTCCAAACA
51221 CCTTCTCAAACA
1 CCTTC-CAAACA
*
51233 CGTTCCAAACA
1 CCTTCCAAACA
*
51244 CCTCCCAAACA
1 CCTTCCAAACA
51255 CCTT-CAAACA
1 CCTTCCAAACA
51265 CC
1 CC
51267 CTCTTAACCA
Statistics
Matches: 39, Mismatches: 6, Indels: 3
0.81 0.12 0.06
Matches are distributed among these distances:
10 8 0.21
11 23 0.59
12 8 0.21
ACGTcount: A:0.33, C:0.44, G:0.04, T:0.19
Consensus pattern (11 bp):
CCTTCCAAACA
Left flanking sequence: Indices 50710 -- 51209
GAGCAAACCAACGGTGAGCACGGTGTAGAGCACAACCTTGCCCACACACGTCTCGCTGGCCTGGG
TAATCAATCCGGTAATAGACATGGTGTATGGAGATGAAAAAGATGGGCGCGCGTCTATCGGAGAT
GTTGGGCTGCGTCCTCGGCACACGAGCCGCGGTTCCTTGGCACAGGGGTAAGGGGGAAGTGTGTG
TGGGGAAGGGATTGGGATGGTGTGGAATCTGGGTGTTTAAGTGTTGCTACTGGTAGTTACTGGCT
CTAGTGGTTGTTGGGTTTGGTGGGTTGTGGGGTCGCGACCGTACTCCGATGTATTGTTAGGGGTG
AAATCTCGTGTAGCCTCCTTGTTTCACGCGACACGGAGGTGGCAGGAACAATTATCGGGGTGAAA
CCGTCAAGGTGTGGAGACGAGAAGGTCGGTCAGCACTGGTACCAAGCCTTGGGTCGATCCTACGC
AATACTTTGAATAAACTAGACTACCCACCAACCTCTCATAATCAT
Right flanking sequence: Indices 51267 -- 51766
CTCTTAACCACCACTCATTGCCACCTCACATCCCTTCCCACTCACCACCTCATCTCAGTGTACAC
GTCCCCAGGTTTGATCGAGGCGTGTTTAGCGCGCGCTAACACGTCGACCATCACTGCCATGAGGA
TTATCGCCGTGTTCATAGCGTTGTTCGCGCTCACGGTGGCGTGGAGCAAGGAGGAGTACGAGATC
TTCTCCGTCAACGACAAGGTCCAGGCCGACCTCGGGCCCACCACCTTCTACGCGTGGCTCAACGT
GTCGCGCAAGGCGCCCTACGCGGAGATCAACAAGGCCTACCGCAAGCTCCTGCGCAAAATCCACC
CGGACAAGTACAAGGGCAAGCAGAAGCGCGAGATGGAGCTCCGCTACCAGACCCTTTCCGTCGTC
GGCAACATTTTGCGCGACAACGACTTGCGCCAGCGGTACGACTACTTTTTGGACCGCGGGTTCCC
GAAGTGGAAGGGCACCACCTACTTGTACAGTCGCTACCGCCCCGG
Found at i:66742 original size:60 final size:60
Alignment explanation
Indices: 66649--67008 Score: 612
Period size: 60 Copynumber: 6.0 Consensus size: 60
66639 CGGTGTCACG
* *
66649 CTTCGTCTTGGAAGGCCTCTTCAGCGTAGTGGGCTCAGGGTCACATGGGGTCAGAGTGGT
1 CTTCGTCTTAGAAGGCCTCTTCAGCGTAGTGGGCTCAGGGTCACACGGGGTCAGAGTGGT
* *
66709 CTTCGTCTTAGATGGCCTGTTCAGCGTAGTGGGCTCAGGGTCACACGGGGTCAGAGTGGT
1 CTTCGTCTTAGAAGGCCTCTTCAGCGTAGTGGGCTCAGGGTCACACGGGGTCAGAGTGGT
*
66769 CTTCGTCTTAGACGGCCTCTTCAGCGTAGTGGGCTCAGGGTCACACGGGGTCAGAGTGGT
1 CTTCGTCTTAGAAGGCCTCTTCAGCGTAGTGGGCTCAGGGTCACACGGGGTCAGAGTGGT
*
66829 CTTCGTCTTAGATGGCCTCTTCAGCGTAGTGGGCTCAGGGTCACACGGGGTCAGAGTGGT
1 CTTCGTCTTAGAAGGCCTCTTCAGCGTAGTGGGCTCAGGGTCACACGGGGTCAGAGTGGT
* *
66889 CTTCGTCTTGGAAGGCTTCTTCAGCGTAGTGGGCTCAGGGTCACACGGGGTCAGAGTGGT
1 CTTCGTCTTAGAAGGCCTCTTCAGCGTAGTGGGCTCAGGGTCACACGGGGTCAGAGTGGT
* * * *
66949 CTTCGTCTTAGAAGGCTTCTTCAGGGTGGTGGGCTCAGGGTCACACGGGGTCAGGGTGGT
1 CTTCGTCTTAGAAGGCCTCTTCAGCGTAGTGGGCTCAGGGTCACACGGGGTCAGAGTGGT
67009 TGATTTAGTC
Statistics
Matches: 286, Mismatches: 14, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
60 286 1.00
ACGTcount: A:0.15, C:0.22, G:0.37, T:0.26
Consensus pattern (60 bp):
CTTCGTCTTAGAAGGCCTCTTCAGCGTAGTGGGCTCAGGGTCACACGGGGTCAGAGTGGT
Left flanking sequence: Indices 66149 -- 66648
CCGTGGTCACCATCAGTTTAGGTGCCATCTCCAGTTGGTTCATGAGAGAGCATACTCTTCACACG
ACTATGAACCGTGATTGATTTGAAGCGAAATCATTTATAGAATACCTTCTACAGAATCACATCGA
ATTTGTGGAATTTTTTCCGTTTTCATACTTGCCTCAGTTGTAACCTAAATCCTGTCTCGGCCACA
ACCATGAAGGGAACAGTCATGAAACTCGTGCATGGAGTTGTGACGACTCAAAAAGGTTGAATTAT
GGATTATGACTGATTCTACAAATTGAAGTGGGCTATAGCTAATCTGTGTTATTCCATACTGATGT
ATATAATAAAGATAGCTATTTTTGGTTCATAGAGATTGATATGATGGTTTCAATTGAGCATTCAT
ATCATCTTCTACGCAGTCACAATCACGGTGGGAGTAGGAGCTGTCACAGTTTCGGTGACAACACC
TGTGCAAGTCAGACAAGTTTTCGTGGAGGTGGTCTCGGTGTCACG
Right flanking sequence: Indices 67009 -- 67508
TGATTTAGTCTTGTCCTTAGTGGTCTTAGTCTTAGTTTTCGTCTTAGTTTGGGTGGTCTCAGTAG
TCAAAGTCAGGGGAATGGTCGAAGTAGGCTGGGTCAGTGTGGTGGTGGGCTTAGTCAGCTCGCCT
GGGAACCACCCCCACGTAGAAGTCGTTGTCTTGTAAATAATTGTAATATGGGTCGGAGTATTGAC
CACGGGAGGCGGCTTGATAACGACAGGCGGCTTGACGACAGGCGGTTGAATAACCACAGGCGGCT
GAACAACAACAGGTGGCTTATAAACAGGGTAACAATTCAAAAGCCAATTGTAGAGAAAACCAAAA
GTAGCATCAGCCTTTGCTTCGGCCTTTGCCTCTGCGTTTGCTTCAGCAGTAACGATGCCGGCTGC
GGACACGAGAAGAATAGCTTTGGAAAATTGCATCTCAATTGACTAAGGAAGTTTTTAGGAATATT
GTGTATTTATAGGTGATCCTGTTGCAATCTTCCTAAACAGTTTTA
Found at i:67231 original size:18 final size:18
Alignment explanation
Indices: 67210--67268 Score: 72
Period size: 18 Copynumber: 3.4 Consensus size: 18
67200 TGACCACGGG
67210 AGGCGGCTTGATAACGAC
1 AGGCGGCTTGATAACGAC
67228 AGGCGGCTTG---ACGAC
1 AGGCGGCTTGATAACGAC
*
67243 AGGCGG-TTGAATAACCAC
1 AGGCGGCTTG-ATAACGAC
67261 AGGCGGCT
1 AGGCGGCT
67269 GAACAACAAC
Statistics
Matches: 35, Mismatches: 1, Indels: 9
0.78 0.02 0.20
Matches are distributed among these distances:
14 3 0.09
15 11 0.31
18 20 0.57
19 1 0.03
ACGTcount: A:0.25, C:0.24, G:0.36, T:0.15
Consensus pattern (18 bp):
AGGCGGCTTGATAACGAC
Left flanking sequence: Indices 66710 -- 67209
TTCGTCTTAGATGGCCTGTTCAGCGTAGTGGGCTCAGGGTCACACGGGGTCAGAGTGGTCTTCGT
CTTAGACGGCCTCTTCAGCGTAGTGGGCTCAGGGTCACACGGGGTCAGAGTGGTCTTCGTCTTAG
ATGGCCTCTTCAGCGTAGTGGGCTCAGGGTCACACGGGGTCAGAGTGGTCTTCGTCTTGGAAGGC
TTCTTCAGCGTAGTGGGCTCAGGGTCACACGGGGTCAGAGTGGTCTTCGTCTTAGAAGGCTTCTT
CAGGGTGGTGGGCTCAGGGTCACACGGGGTCAGGGTGGTTGATTTAGTCTTGTCCTTAGTGGTCT
TAGTCTTAGTTTTCGTCTTAGTTTGGGTGGTCTCAGTAGTCAAAGTCAGGGGAATGGTCGAAGTA
GGCTGGGTCAGTGTGGTGGTGGGCTTAGTCAGCTCGCCTGGGAACCACCCCCACGTAGAAGTCGT
TGTCTTGTAAATAATTGTAATATGGGTCGGAGTATTGACCACGGG
Right flanking sequence: Indices 67269 -- 67768
GAACAACAACAGGTGGCTTATAAACAGGGTAACAATTCAAAAGCCAATTGTAGAGAAAACCAAAA
GTAGCATCAGCCTTTGCTTCGGCCTTTGCCTCTGCGTTTGCTTCAGCAGTAACGATGCCGGCTGC
GGACACGAGAAGAATAGCTTTGGAAAATTGCATCTCAATTGACTAAGGAAGTTTTTAGGAATATT
GTGTATTTATAGGTGATCCTGTTGCAATCTTCCTAAACAGTTTTAGTTGATTTTAGTCGATTAAC
GGCACGGCTGAGCCTTGACGCTCATCCGACGTTCCAAAGAAGGAAGGTTGGACTCGTATTGGGAA
ACCAAGTAGGCACGCTCAACAGCCTCGTAAAAACTTCACCCACGACGTTGAGCTTCCTGGAACCT
TCTATGAAGAGTGTTTGCCCTCGTCATTGAGGACATCGTCAACGATGACGAAGCTGATGAATGTG
TCATGGATTGAGACCTAAATCGTTTTTGCTGACTGTATCGTAAAT
Found at i:67243 original size:15 final size:14
Alignment explanation
Indices: 67223--67252 Score: 51
Period size: 15 Copynumber: 2.1 Consensus size: 14
67213 CGGCTTGATA
67223 ACGACAGGCGGCTTG
1 ACGACAGGCGG-TTG
67238 ACGACAGGCGGTTG
1 ACGACAGGCGGTTG
67252 A
1 A
67253 ATAACCACAG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 4 0.27
15 11 0.73
ACGTcount: A:0.23, C:0.23, G:0.40, T:0.13
Consensus pattern (14 bp):
ACGACAGGCGGTTG
Left flanking sequence: Indices 66723 -- 67222
GCCTGTTCAGCGTAGTGGGCTCAGGGTCACACGGGGTCAGAGTGGTCTTCGTCTTAGACGGCCTC
TTCAGCGTAGTGGGCTCAGGGTCACACGGGGTCAGAGTGGTCTTCGTCTTAGATGGCCTCTTCAG
CGTAGTGGGCTCAGGGTCACACGGGGTCAGAGTGGTCTTCGTCTTGGAAGGCTTCTTCAGCGTAG
TGGGCTCAGGGTCACACGGGGTCAGAGTGGTCTTCGTCTTAGAAGGCTTCTTCAGGGTGGTGGGC
TCAGGGTCACACGGGGTCAGGGTGGTTGATTTAGTCTTGTCCTTAGTGGTCTTAGTCTTAGTTTT
CGTCTTAGTTTGGGTGGTCTCAGTAGTCAAAGTCAGGGGAATGGTCGAAGTAGGCTGGGTCAGTG
TGGTGGTGGGCTTAGTCAGCTCGCCTGGGAACCACCCCCACGTAGAAGTCGTTGTCTTGTAAATA
ATTGTAATATGGGTCGGAGTATTGACCACGGGAGGCGGCTTGATA
Right flanking sequence: Indices 67253 -- 67752
ATAACCACAGGCGGCTGAACAACAACAGGTGGCTTATAAACAGGGTAACAATTCAAAAGCCAATT
GTAGAGAAAACCAAAAGTAGCATCAGCCTTTGCTTCGGCCTTTGCCTCTGCGTTTGCTTCAGCAG
TAACGATGCCGGCTGCGGACACGAGAAGAATAGCTTTGGAAAATTGCATCTCAATTGACTAAGGA
AGTTTTTAGGAATATTGTGTATTTATAGGTGATCCTGTTGCAATCTTCCTAAACAGTTTTAGTTG
ATTTTAGTCGATTAACGGCACGGCTGAGCCTTGACGCTCATCCGACGTTCCAAAGAAGGAAGGTT
GGACTCGTATTGGGAAACCAAGTAGGCACGCTCAACAGCCTCGTAAAAACTTCACCCACGACGTT
GAGCTTCCTGGAACCTTCTATGAAGAGTGTTTGCCCTCGTCATTGAGGACATCGTCAACGATGAC
GAAGCTGATGAATGTGTCATGGATTGAGACCTAAATCGTTTTTGC
Found at i:67271 original size:18 final size:18
Alignment explanation
Indices: 67241--67286 Score: 56
Period size: 18 Copynumber: 2.6 Consensus size: 18
67231 CGGCTTGACG
* * *
67241 ACAGGCGGTTGAATAACC
1 ACAGGCGGCTGAACAACA
67259 ACAGGCGGCTGAACAACA
1 ACAGGCGGCTGAACAACA
*
67277 ACAGGTGGCT
1 ACAGGCGGCT
67287 TATAAACAGG
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.33, C:0.24, G:0.30, T:0.13
Consensus pattern (18 bp):
ACAGGCGGCTGAACAACA
Left flanking sequence: Indices 66741 -- 67240
GCTCAGGGTCACACGGGGTCAGAGTGGTCTTCGTCTTAGACGGCCTCTTCAGCGTAGTGGGCTCA
GGGTCACACGGGGTCAGAGTGGTCTTCGTCTTAGATGGCCTCTTCAGCGTAGTGGGCTCAGGGTC
ACACGGGGTCAGAGTGGTCTTCGTCTTGGAAGGCTTCTTCAGCGTAGTGGGCTCAGGGTCACACG
GGGTCAGAGTGGTCTTCGTCTTAGAAGGCTTCTTCAGGGTGGTGGGCTCAGGGTCACACGGGGTC
AGGGTGGTTGATTTAGTCTTGTCCTTAGTGGTCTTAGTCTTAGTTTTCGTCTTAGTTTGGGTGGT
CTCAGTAGTCAAAGTCAGGGGAATGGTCGAAGTAGGCTGGGTCAGTGTGGTGGTGGGCTTAGTCA
GCTCGCCTGGGAACCACCCCCACGTAGAAGTCGTTGTCTTGTAAATAATTGTAATATGGGTCGGA
GTATTGACCACGGGAGGCGGCTTGATAACGACAGGCGGCTTGACG
Right flanking sequence: Indices 67287 -- 67786
TATAAACAGGGTAACAATTCAAAAGCCAATTGTAGAGAAAACCAAAAGTAGCATCAGCCTTTGCT
TCGGCCTTTGCCTCTGCGTTTGCTTCAGCAGTAACGATGCCGGCTGCGGACACGAGAAGAATAGC
TTTGGAAAATTGCATCTCAATTGACTAAGGAAGTTTTTAGGAATATTGTGTATTTATAGGTGATC
CTGTTGCAATCTTCCTAAACAGTTTTAGTTGATTTTAGTCGATTAACGGCACGGCTGAGCCTTGA
CGCTCATCCGACGTTCCAAAGAAGGAAGGTTGGACTCGTATTGGGAAACCAAGTAGGCACGCTCA
ACAGCCTCGTAAAAACTTCACCCACGACGTTGAGCTTCCTGGAACCTTCTATGAAGAGTGTTTGC
CCTCGTCATTGAGGACATCGTCAACGATGACGAAGCTGATGAATGTGTCATGGATTGAGACCTAA
ATCGTTTTTGCTGACTGTATCGTAAATTGAAAATACAATAAGACA
Found at i:71554 original size:24 final size:24
Alignment explanation
Indices: 71464--71547 Score: 111
Period size: 24 Copynumber: 3.6 Consensus size: 24
71454 GGGGGGTATT
*
71464 AGTAGTTTTTGT-TT-TT-GTCGA
1 AGTAGTTTTCGTCTTCTTGGTCGA
* *
71485 TGTAGTTTTCGTCTTCTTGGTTGA
1 AGTAGTTTTCGTCTTCTTGGTCGA
71509 AGTAGTTTTCGTCTTCTTGGTCGA
1 AGTAGTTTTCGTCTTCTTGGTCGA
*
71533 AGTAGTCTTCGTCTT
1 AGTAGTTTTCGTCTT
71548 AGTGGTCTTC
Statistics
Matches: 54, Mismatches: 6, Indels: 3
0.86 0.10 0.05
Matches are distributed among these distances:
21 10 0.19
22 2 0.04
23 2 0.04
24 40 0.74
ACGTcount: A:0.12, C:0.13, G:0.24, T:0.51
Consensus pattern (24 bp):
AGTAGTTTTCGTCTTCTTGGTCGA
Left flanking sequence: Indices 70964 -- 71463
TTCCGCTTGTGGAAAGCTTGAGGGCGACCGCCAAGAATCTATCCAAGGCGGTGGAGTGCTCCTAT
TGCGTGGGTACTGCCCCTTGCAAGTGCATCAGGCCATCTTCGATTATTTATTGACGAGGTGCAGA
AGCACATTCAATCTCTCCACCAACATTGCTATTTCAAAAAGCCCCGTTGTTTGTTATAATTAACG
AGGAGGTGTTCTTCCTGGATCAGAATCGATCCGGAGTTCGTGTTGCATAAAAGTTTACGAAAAAA
ACTCCATGTTAAGTTGAAGGCTTCGATTGGTCATGTGTTCGTAAGCGTCTTCATAAAATTCCAGA
TTGAAGAGTGAACATCCTCATTACAAATTGCCTACTTTCTAATTTTTCTTCTCCAGGTCATAAAA
TCAACTAAACATTCAATACATTAAAAATACAGAACGGTCACAGTTTCAGTAGGAGTGGGAGCAGT
CACGGTGTAAGTGGTTGTCCCCTCACAAGTGGGTTGGGGGGTATT
Right flanking sequence: Indices 71548 -- 72047
AGTGGTCTTCTCGACTGGGGGCTTACATTTCCAAGGGAAAAGGAAGCAGTAGAGCTGACCGAAAG
TCGGGTCAGCAGTAGCTTCAGCCGCAACAAAACTAGCGCCAGCAACGGCGAGGACAACCTTGAAG
AATTGCATAATCAGTGTCGAAATTTCGAAAGGGAAATCGGAGACTTATAAGTATTTGTGTTTTTC
ATTTATCACTAATTATAGTTGAACAACGGTGCTGATGTGCCTGTTCACTCAGCTAATATTACCAA
AGAGGTAATTCCGGGGTCGGATTTGGAATCCAAATTCCTAAATTAGATTCATTTATGGGTCTTCA
GAGAGACGCTCGAAAGGCAAATGTCCTGAAACCCTTGAGGGTTTCACTAAACTCAAGGACTCCAA
CAGAGTTCTGGTGTGCTCAAGCGAAGTTGAATAGCTTAGTTAGCGGGGGATCTTTCCCTCGACCC
AAATCGTTGTCCGGAGATCTCAATTTAAAGAGAAGAATCGAACGA
Found at i:129327 original size:24 final size:24
Alignment explanation
Indices: 129295--129354 Score: 102
Period size: 24 Copynumber: 2.5 Consensus size: 24
129285 CGTCATCGTC
*
129295 GTCTGCGGGTTCTTGGTGCTGCTT
1 GTCTGCGGGTTCTTCGTGCTGCTT
129319 GTCTGCGGGTTCTTCGTGCTGCTT
1 GTCTGCGGGTTCTTCGTGCTGCTT
*
129343 GTATGCGGGTTC
1 GTCTGCGGGTTC
129355 CTCCGCAACG
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 34 1.00
ACGTcount: A:0.02, C:0.22, G:0.37, T:0.40
Consensus pattern (24 bp):
GTCTGCGGGTTCTTCGTGCTGCTT
Left flanking sequence: Indices 128795 -- 129294
GCCTGGGGGAACAGTTGGAGTGCTGAACCTATGGCCCGCTCGAGGTCATCGTCCAGCAGCGACGG
TGCTCGCTGCTCAAACACCAGGGTGAGCGCAGCCAGAATCGCGCTGGAAAGGTCGTCCTCGTCGG
ATTTGCGCTTAGGCACGGCTGCTGATGGCTTTGGGAGGTTGGGGCGGGCCTGAGAGTCTCGCTGG
GGAGAGCGGTATGCAGGCACAGGAGCTGCCTTCGGAGGACTGGGGACAGAGAACTTTTCCTTTTC
GGCGGGTTGCTGGGGCCCCAGAAGCTCGGGGAACGCTTTGAATGCATCGCCAATCGCGCCCATGA
GATCATCATCCTCACCCTCGTCGTTTGCGGGCTGAGCTGGCGACTGCGTAAGCTCGCGGAACGCG
TCCTGAATCGCTGCGTCGAGCTCGGGCGATTCCGTGGGCTTTTTGGGTTCGGGCAGCCGCAGGAT
CTGGCGGAGAGCATCGCCAATGGCCCCTGCTAAGTCGTCATCGTC
Right flanking sequence: Indices 129355 -- 129854
CTCCGCAACGGGTGGGGTTGGTTCCTTGGGTTCCTTCCCCTTGGCGGGCTCTGGTGCCTGATGAG
GGGGCAGAGGGAGGTCTTGGAGGTCGCGGAACGCGTCACCGATTGCCCCCTTGAGATCGTCCGAG
TCTGAATGCGCGTCTTTGCTCGCATGCTCCTCGTCCTTTTCCGCGGGTGGGTCGTCCTCTTTGAA
CTCTGCTCCAAACTGCTTGAACGCATCACCAATGGCTCCCTCTAGGTCGAGGTCCATGTCATCGT
CCTTGTGTGGCTCCTCCTGGTGCTCACTGTGCACATGGGCATCCTCCTCTGTGTGCTCTGGCATA
TCGATATCGATCTCGGGGTGTTTATCGATCTCAGGCTCGGGCTCAGGCTCTTTCTGCGGAGCAAT
CTCGGCAAAGGCGTCGCCGATGGCTGCATCCAAGTCAAACTCCTCGTGGTCCTGCTCTGCTTTGT
GGTAGTCGTCCTGGTGGTAGTCCTGTTTCTCGTAGTGGTGCTCGG
Found at i:138071 original size:33 final size:33
Alignment explanation
Indices: 138025--138143 Score: 154
Period size: 33 Copynumber: 3.7 Consensus size: 33
138015 TCGGTAATAT
138025 AAGGTAGTCTAGAGTTCCAATAGTGAATTACTG
1 AAGGTAGTCTAGAGTTCCAATAGTGAATTACTG
* * *
138058 AGGGTAGTTTAGAGTTCCAATTGTGAATTACTG
1 AAGGTAGTCTAGAGTTCCAATAGTGAATTACTG
* *
138091 AAGGTAGTCTAAAGTTCCAATA--GAATCACTG
1 AAGGTAGTCTAGAGTTCCAATAGTGAATTACTG
* *
138122 AAGGTAGT-TAGGGTTTCAATAG
1 AAGGTAGTCTAGAGTTCCAATAG
138144 CAATTGCTTT
Statistics
Matches: 74, Mismatches: 11, Indels: 4
0.83 0.12 0.04
Matches are distributed among these distances:
30 10 0.14
31 16 0.22
33 48 0.65
ACGTcount: A:0.33, C:0.11, G:0.25, T:0.31
Consensus pattern (33 bp):
AAGGTAGTCTAGAGTTCCAATAGTGAATTACTG
Left flanking sequence: Indices 137525 -- 138024
ACGACGGCCTCAGGCTCGGCACCGGGATCAAGCAGGAGTCCGCCACCCGCGACGTCGTCCAGAAG
CTGTTCCTCGCCGCCCACTCGCCCCACTGCGAGATCATCAAGCCCGGTGCCGAGCACGGCGACGT
CTACAAGGGTCTGCCGCCCAAGATCCAGGTGTTGACCGAGACCAAGATCGGGCGCAAAACCGTCA
CCAAAGTCACCGAGTTTGAGCGGTTCTTCATCAAGCCCACCGCGCTTGCCGACGAGCTCAAGGCC
AAGTGCCAGGGGCTGGCCACCATCCACGAGTGTGTCCAGAACCCCAAGCTCCAGGAGGTGCAGAT
CCAGGGCCCGCACGGGCCGGCGATTGTCGAGTTGCTCAAGCTGAAGGGGGTGCCAGTGTCGTTCA
TCAAGTTCGAGGACAAGCTGAGAAAGAAGAGAAAGAGGTAGCGTTCTGGTAGTTGCTTTGGGAAG
AATAGGTAGTCTAGAGTTTCAATAGTATATTACATTCGGTAATAT
Right flanking sequence: Indices 138144 -- 138643
CAATTGCTTTCGGTCTATCTCTCCAATATTACAAAAAAGTAGTCTATAGCGTTCCATTAGTATAT
TACATTCGTTAGTCGTGTTACAACATGATCTCGATCACGTTGTGGTAGGGACCCGCGCGGACAAA
CGCCAGGCGGGTCTGGGGATTGATGTTGAGTTTCTGGGCAGGCACCCCCTCGGGATACACGTGGG
CGTTCTTGCACTGGCGGATGTCGATGTAGGTCAAGGGAGCACGCCCCGAGATGAGCGCGTCCACG
CCCGCACGGGTGACGCGGATACACCCCTTGACAATGAGTTTTTCGAGCTTGGTAAGCAGCATCAG
CACCGCCACGAGCAGCAGGTCCAGCACCGCCAGCCCGCAGAACAGGAGGTCGAGCTCGCGCAACT
GGTGGCACCCCATGGCCAACACCTCCACCAGCACGTCCAGCAACGCGCAGCAGAAGTTGAGGTCC
AAGATCTCGAGGTTCTGGCACAGCAGCGCCAACGCAATGATGGCC
Found at i:152521 original size:21 final size:21
Alignment explanation
Indices: 152491--152894 Score: 147
Period size: 21 Copynumber: 19.2 Consensus size: 21
152481 TGGTGTCACC
* *
152491 TCGCCTCTGTACTCGCCTACG
1 TCGCCGCTGTACTCGCCGACG
* *
152512 TCGCCGCTGTACTCTCCCACG
1 TCGCCGCTGTACTCGCCGACG
*
152533 TC-CC-CTTCGTACTCGCCTACG
1 TCGCCGC-T-GTACTCGCCGACG
*
152554 TCGCC-CTCGTAC-AGCCCGACG
1 TCGCCGCT-GTACTCG-CCGACG
* *
152575 TCTCCCCTGTACAGTC-CC-ACG
1 TCGCCGCTGTAC--TCGCCGACG
* *
152596 TCTCCTCTGTACTCGCCGACG
1 TCGCCGCTGTACTCGCCGACG
*
152617 TC-CC-CTTCGTACAGTC-CC-ACC
1 TCGCCGC-T-GTAC--TCGCCGACG
*
152638 TCGCCTCTGTACTCGCCGACG
1 TCGCCGCTGTACTCGCCGACG
*
152659 TCGCCGTCT-TAC-AGCCCGACG
1 TCGCCG-CTGTACTCG-CCGACG
* *
152680 TCGCCGCTGTACTCGCCCACT
1 TCGCCGCTGTACTCGCCGACG
*
152701 TCGCCG-TCGTACTCGCCTACG
1 TCGCCGCT-GTACTCGCCGACG
* *
152722 TCGCCG-TCGTACTCCCCCACG
1 TCGCCGCT-GTACTCGCCGACG
*
152743 -CTGCCG-TCGTACTCGCCTACG
1 TC-GCCGCT-GTACTCGCCGACG
*
152764 TCGCC-CAGCTACTCGCCGACG
1 TCGCCGCTG-TACTCGCCGACG
* *
152785 TCGCCTTCT-TAC-AGCCCGACG
1 TCGCC-GCTGTACTCG-CCGACG
* * * *
152806 TCGCCG-TCCTAC-AGCCCCACC
1 TCGCCGCT-GTACTCG-CCGACG
* *
152827 TCTCCTCTGTAC-CTGCCGACG
1 TCGCCGCTGTACTC-GCCGACG
*
152848 -CTGCCGCTGTACTCGCCCACG
1 TC-GCCGCTGTACTCGCCGACG
152869 TCGCCG-TCGTAC-CTGCCGACG
1 TCGCCGCT-GTACTC-GCCGACG
152890 TCGCC
1 TCGCC
152895 TTCCTACAGC
Statistics
Matches: 304, Mismatches: 40, Indels: 78
0.72 0.09 0.18
Matches are distributed among these distances:
19 7 0.02
20 21 0.07
21 252 0.83
22 20 0.07
23 4 0.01
ACGTcount: A:0.11, C:0.47, G:0.20, T:0.22
Consensus pattern (21 bp):
TCGCCGCTGTACTCGCCGACG
Left flanking sequence: Indices 151991 -- 152490
ACGTGATGACCTCGCGCGGCCACTTGATGGCCATCACCCGTCACGGTATCAACCGTGCCGACACT
GGTGCCCTCATGCGTTGTTCGTTCGAGGAAACAGTCGAAATCTTGCTTGACGCCGCTGCCACGGC
CGAGCTCGACGACTGTCGCGGTATTTCCGAGAACGTCATGCTTGGTCAGATGGCGCCGTTGGGTA
CCGGTGCGTTTGACGTCATGGTGGACGACAACATGCTTCAGGAGGCGCCTGGCGTCACTGTCGAG
GGCGAGTACGAGGATGGCGGTGCCACCCCGTACCGCGACTACGACATGGAGGACGACAAGATCCA
GTTCGACGAGGGTGGTGCGTTCTCGCCCATCCACACCGCCCAGGTGGGCGAGTCCGGTGGGTTGA
CTTCGTACGGAGGCATGCCTCAGCTGCCTGGGGCGGCCACGTCGCCGTTCAACTTCCCGACTTCG
CCGTCGTTCCTGGGAGCTACGCTGCCGGGTTACGGTGGTGTCACC
Right flanking sequence: Indices 152895 -- 153394
TTCCTACAGCCCGACGTCGCCTTCGTACCTGCCGACGCTGCCGCAGTACCTGCCCACGTCGCCGC
AGTACAGCCCCACTCTGCCCAGCTACTCGCCTGGGTCGCCGCAGTACACCCCTCCGGAGCCCAAG
AAGGAAGAGGAAAAGTAACCTGTTTGATGATTGTACTATTAAAACCAAAAAAATGCACTAATACT
TCATATAGAAATTCACGAAACATTAATCATTTTGGTGTACAATCAACATAGTAGATCACTTCTTA
CATACCGTGGCGTGGTCAACGAACGCTTCATACGACGGACAGAACTGCTCGCACGCCTTACAAAA
CCCGGGTTTCTCGGCCCCTCCGTTCCTGATTGCATTGTAGTGGACAGTCATGTGTCGTTTTAGGG
TGTAGGGGCGGCTGAACCGTGGCGTGGTACAAATTGGGTTGTTTTCGTGGTAAAACGGGCAAACG
TTGGACCCCAGAGACTTATTTTGCTCCACTTGCACATTCTTACTA
Found at i:152546 original size:42 final size:42
Alignment explanation
Indices: 152499--152786 Score: 211
Period size: 42 Copynumber: 6.9 Consensus size: 42
152489 CCTCGCCTCT
* *
152499 GTACTCGCCTACGTCGCCGCTGTACTCTCCCACGTCCCCTTC
1 GTACTCGCCTACGTCGCCGCTGTACTCGCCCACGTCCCCGTC
* *
152541 GTACTCGCCTACGTCGCC-CTCGTAC-AGCCCGACGTCTCCCCT-
1 GTACTCGCCTACGTCGCCGCT-GTACTCGCCC-ACGTC-CCCGTC
* * * *
152583 GTACAGTC-CC-ACGTCTCCTCTGTACTCGCCGACGTCCCCTTC
1 GTAC--TCGCCTACGTCGCCGCTGTACTCGCCCACGTCCCCGTC
* * * *
152625 GTACAGTC-CC-ACCTCGCCTCTGTACTCGCCGACGTCGCCGTC
1 GTAC--TCGCCTACGTCGCCGCTGTACTCGCCCACGTCCCCGTC
* * * * *
152667 TTAC-AGCCCGACGTCGCCGCTGTACTCGCCCACTTCGCCGTC
1 GTACTCG-CCTACGTCGCCGCTGTACTCGCCCACGTCCCCGTC
* *
152709 GTACTCGCCTACGTCGCCG-TCGTACTCCCCCACG-CTGCCGTC
1 GTACTCGCCTACGTCGCCGCT-GTACTCGCCCACGTC-CCCGTC
* *
152751 GTACTCGCCTACGTCGCC-CAGCTACTCGCCGACGTC
1 GTACTCGCCTACGTCGCCGCTG-TACTCGCCCACGTC
152787 GCCTTCTTAC
Statistics
Matches: 204, Mismatches: 25, Indels: 33
0.78 0.10 0.13
Matches are distributed among these distances:
41 14 0.07
42 175 0.86
43 13 0.06
44 2 0.01
ACGTcount: A:0.11, C:0.46, G:0.20, T:0.23
Consensus pattern (42 bp):
GTACTCGCCTACGTCGCCGCTGTACTCGCCCACGTCCCCGTC
Left flanking sequence: Indices 151999 -- 152498
ACCTCGCGCGGCCACTTGATGGCCATCACCCGTCACGGTATCAACCGTGCCGACACTGGTGCCCT
CATGCGTTGTTCGTTCGAGGAAACAGTCGAAATCTTGCTTGACGCCGCTGCCACGGCCGAGCTCG
ACGACTGTCGCGGTATTTCCGAGAACGTCATGCTTGGTCAGATGGCGCCGTTGGGTACCGGTGCG
TTTGACGTCATGGTGGACGACAACATGCTTCAGGAGGCGCCTGGCGTCACTGTCGAGGGCGAGTA
CGAGGATGGCGGTGCCACCCCGTACCGCGACTACGACATGGAGGACGACAAGATCCAGTTCGACG
AGGGTGGTGCGTTCTCGCCCATCCACACCGCCCAGGTGGGCGAGTCCGGTGGGTTGACTTCGTAC
GGAGGCATGCCTCAGCTGCCTGGGGCGGCCACGTCGCCGTTCAACTTCCCGACTTCGCCGTCGTT
CCTGGGAGCTACGCTGCCGGGTTACGGTGGTGTCACCTCGCCTCT
Right flanking sequence: Indices 152787 -- 153286
GCCTTCTTACAGCCCGACGTCGCCGTCCTACAGCCCCACCTCTCCTCTGTACCTGCCGACGCTGC
CGCTGTACTCGCCCACGTCGCCGTCGTACCTGCCGACGTCGCCTTCCTACAGCCCGACGTCGCCT
TCGTACCTGCCGACGCTGCCGCAGTACCTGCCCACGTCGCCGCAGTACAGCCCCACTCTGCCCAG
CTACTCGCCTGGGTCGCCGCAGTACACCCCTCCGGAGCCCAAGAAGGAAGAGGAAAAGTAACCTG
TTTGATGATTGTACTATTAAAACCAAAAAAATGCACTAATACTTCATATAGAAATTCACGAAACA
TTAATCATTTTGGTGTACAATCAACATAGTAGATCACTTCTTACATACCGTGGCGTGGTCAACGA
ACGCTTCATACGACGGACAGAACTGCTCGCACGCCTTACAAAACCCGGGTTTCTCGGCCCCTCCG
TTCCTGATTGCATTGTAGTGGACAGTCATGTGTCGTTTTAGGGTG
Found at i:152678 original size:63 final size:64
Alignment explanation
Indices: 152611--152880 Score: 194
Period size: 63 Copynumber: 4.3 Consensus size: 64
152601 TCTGTACTCG
*
152611 CCGACGTC-CCCTTCGTACAGTCCCACCTCGCCTCTGTACTCGCCGACGTCGCCGTCTTACAGC
1 CCGACGTCGCCCGTCGTACAGTCCCACCTCGCCTCTGTACTCGCCGACGTCGCCGTCTTACAGC
* * * * *
152674 CCGACGTCG-CCG-CTGTACTCG-CCCACTTCGCCGTC-GTACTCGCCTACGTCGCCGTCGTACT
1 CCGACGTCGCCCGTC-GTAC-AGTCCCACCTCGCC-TCTGTACTCGCCGACGTCGCCGTCTTACA
*
152735 CC
63 GC
* * * *
152737 CCCACG-CTG-CCGTCGTAC--TCGCCTACGTCGCC-CAGCTACTCGCCGACGTCGCCTTCTTAC
1 CCGACGTC-GCCCGTCGTACAGTC-CC-ACCTCGCCTCTG-TACTCGCCGACGTCGCCGTCTTAC
152797 AGC
62 AGC
* * *
152800 CCGACGTCG-CCGTCCTACAGCCCCACCTCTCCTCTGTAC-CTGCCGACG-CTGCCG-CTGTACT
1 CCGACGTCGCCCGTCGTACAGTCCCACCTCGCCTCTGTACTC-GCCGACGTC-GCCGTCT-TAC-
*
152861 CGC
62 AGC
152864 CC-ACGTCG-CCGTCGTAC
1 CCGACGTCGCCCGTCGTAC
152881 CTGCCGACGT
Statistics
Matches: 165, Mismatches: 23, Indels: 38
0.73 0.10 0.17
Matches are distributed among these distances:
61 2 0.01
62 9 0.05
63 140 0.85
64 13 0.08
65 1 0.01
ACGTcount: A:0.11, C:0.47, G:0.21, T:0.21
Consensus pattern (64 bp):
CCGACGTCGCCCGTCGTACAGTCCCACCTCGCCTCTGTACTCGCCGACGTCGCCGTCTTACAGC
Left flanking sequence: Indices 152111 -- 152610
CTGCCACGGCCGAGCTCGACGACTGTCGCGGTATTTCCGAGAACGTCATGCTTGGTCAGATGGCG
CCGTTGGGTACCGGTGCGTTTGACGTCATGGTGGACGACAACATGCTTCAGGAGGCGCCTGGCGT
CACTGTCGAGGGCGAGTACGAGGATGGCGGTGCCACCCCGTACCGCGACTACGACATGGAGGACG
ACAAGATCCAGTTCGACGAGGGTGGTGCGTTCTCGCCCATCCACACCGCCCAGGTGGGCGAGTCC
GGTGGGTTGACTTCGTACGGAGGCATGCCTCAGCTGCCTGGGGCGGCCACGTCGCCGTTCAACTT
CCCGACTTCGCCGTCGTTCCTGGGAGCTACGCTGCCGGGTTACGGTGGTGTCACCTCGCCTCTGT
ACTCGCCTACGTCGCCGCTGTACTCTCCCACGTCCCCTTCGTACTCGCCTACGTCGCCCTCGTAC
AGCCCGACGTCTCCCCTGTACAGTCCCACGTCTCCTCTGTACTCG
Right flanking sequence: Indices 152881 -- 153380
CTGCCGACGTCGCCTTCCTACAGCCCGACGTCGCCTTCGTACCTGCCGACGCTGCCGCAGTACCT
GCCCACGTCGCCGCAGTACAGCCCCACTCTGCCCAGCTACTCGCCTGGGTCGCCGCAGTACACCC
CTCCGGAGCCCAAGAAGGAAGAGGAAAAGTAACCTGTTTGATGATTGTACTATTAAAACCAAAAA
AATGCACTAATACTTCATATAGAAATTCACGAAACATTAATCATTTTGGTGTACAATCAACATAG
TAGATCACTTCTTACATACCGTGGCGTGGTCAACGAACGCTTCATACGACGGACAGAACTGCTCG
CACGCCTTACAAAACCCGGGTTTCTCGGCCCCTCCGTTCCTGATTGCATTGTAGTGGACAGTCAT
GTGTCGTTTTAGGGTGTAGGGGCGGCTGAACCGTGGCGTGGTACAAATTGGGTTGTTTTCGTGGT
AAAACGGGCAAACGTTGGACCCCAGAGACTTATTTTGCTCCACTT
Found at i:152810 original size:105 final size:106
Alignment explanation
Indices: 152491--152922 Score: 328
Period size: 105 Copynumber: 4.1 Consensus size: 106
152481 TGGTGTCACC
* *
152491 TCGCCTCTGTACTCGCCTACGTCGCCG-CTGTACTCTCCCACG-TCCCCTTC-GTACTCGCCTAC
1 TCGCCTC-GTACTCGCCTACGTCGCCGTCTGTACTCTCCCACGCTCGCCGTCTGTACTCGCCTAC
* * *
152553 GTCGCCCTCGTACAGCCCGACGTCTCCCCTGTACAGTCCCACG
65 GTCGCCGTCGTACAGCCCGACGTCGCCTCTGTACAG-CCCACG
* * * * ** *
152596 TCTCCTCTGTACTCGCCGACGTCCCCTTC-GTACAGTCCCAC-CTCGCC-TCTGTACTCGCCGAC
1 TCGCCTC-GTACTCGCCTACGTCGCCGTCTGTACTCTCCCACGCTCGCCGTCTGTACTCGCCTAC
* * * *
152658 GTCGCCGTCTTACAGCCCGACGTCGCCGCTGTACTCGCCCACT
65 GTCGCCGTCGTACAGCCCGACGTCGCCTCTGTAC-AGCCCACG
*
152701 TCGCCGTCGTACTCGCCTACGTCGCCGTC-GTACTCCCCCACGCT-GCCGTC-GTACTCGCCTAC
1 TCGCC-TCGTACTCGCCTACGTCGCCGTCTGTACTCTCCCACGCTCGCCGTCTGTACTCGCCTAC
*
152763 GTCGCC--CAGCTAC-TCGCCGACGTCGCCTTCT-TACAGCCCGACG
65 GTCGCCGTC-G-TACAGC-CCGACGTCGCC-TCTGTACAGCCC-ACG
* * * * * * *
152806 TCGCCGTCCTAC-AGCCCCACCTCTCC-TCTGTAC-CTGCCGACGCT-GCCG-CTGTACTCGCCC
1 TCGCC-TCGTACTCG-CCTACGTCGCCGTCTGTACTCT-CCCACGCTCGCCGTCTGTACTCGCCT
* *
152866 ACGTCGCCGTCGTACCTG-CCGACGTCGCCT-TCCTACAGCCCGACG
63 ACGTCGCCGTCGTA-CAGCCCGACGTCGCCTCT-GTACAGCCC-ACG
152911 TCGCCTTCGTAC
1 TCGCC-TCGTAC
152923 CTGCCGACGC
Statistics
Matches: 267, Mismatches: 38, Indels: 44
0.77 0.11 0.13
Matches are distributed among these distances:
103 2 0.01
104 13 0.05
105 239 0.90
106 12 0.04
107 1 0.00
ACGTcount: A:0.11, C:0.46, G:0.20, T:0.22
Consensus pattern (106 bp):
TCGCCTCGTACTCGCCTACGTCGCCGTCTGTACTCTCCCACGCTCGCCGTCTGTACTCGCCTACG
TCGCCGTCGTACAGCCCGACGTCGCCTCTGTACAGCCCACG
Left flanking sequence: Indices 151991 -- 152490
ACGTGATGACCTCGCGCGGCCACTTGATGGCCATCACCCGTCACGGTATCAACCGTGCCGACACT
GGTGCCCTCATGCGTTGTTCGTTCGAGGAAACAGTCGAAATCTTGCTTGACGCCGCTGCCACGGC
CGAGCTCGACGACTGTCGCGGTATTTCCGAGAACGTCATGCTTGGTCAGATGGCGCCGTTGGGTA
CCGGTGCGTTTGACGTCATGGTGGACGACAACATGCTTCAGGAGGCGCCTGGCGTCACTGTCGAG
GGCGAGTACGAGGATGGCGGTGCCACCCCGTACCGCGACTACGACATGGAGGACGACAAGATCCA
GTTCGACGAGGGTGGTGCGTTCTCGCCCATCCACACCGCCCAGGTGGGCGAGTCCGGTGGGTTGA
CTTCGTACGGAGGCATGCCTCAGCTGCCTGGGGCGGCCACGTCGCCGTTCAACTTCCCGACTTCG
CCGTCGTTCCTGGGAGCTACGCTGCCGGGTTACGGTGGTGTCACC
Right flanking sequence: Indices 152923 -- 153422
CTGCCGACGCTGCCGCAGTACCTGCCCACGTCGCCGCAGTACAGCCCCACTCTGCCCAGCTACTC
GCCTGGGTCGCCGCAGTACACCCCTCCGGAGCCCAAGAAGGAAGAGGAAAAGTAACCTGTTTGAT
GATTGTACTATTAAAACCAAAAAAATGCACTAATACTTCATATAGAAATTCACGAAACATTAATC
ATTTTGGTGTACAATCAACATAGTAGATCACTTCTTACATACCGTGGCGTGGTCAACGAACGCTT
CATACGACGGACAGAACTGCTCGCACGCCTTACAAAACCCGGGTTTCTCGGCCCCTCCGTTCCTG
ATTGCATTGTAGTGGACAGTCATGTGTCGTTTTAGGGTGTAGGGGCGGCTGAACCGTGGCGTGGT
ACAAATTGGGTTGTTTTCGTGGTAAAACGGGCAAACGTTGGACCCCAGAGACTTATTTTGCTCCA
CTTGCACATTCTTACTAGCTTCCCGCTCCACGCTGGTGGCCTTTT
Found at i:152846 original size:42 final size:42
Alignment explanation
Indices: 152800--152931 Score: 130
Period size: 42 Copynumber: 3.1 Consensus size: 42
152790 TTCTTACAGC
* *
152800 CCGACGTCGCCGTCCTACAGCCCCACCTCTCCTCTGTACCTG
1 CCGACGTCGCCGTCCTACAGCCCCACGTCGCCTCTGTACCTG
* *
152842 CCGACG-CTGCCG-CTGTAC-TCGCCCACGTCGCCGTC-GTACCTG
1 CCGACGTC-GCCGTC-CTACAGC-CCCACGTCGCC-TCTGTACCTG
* *
152884 CCGACGTCGCCTTCCTACAGCCCGACGTCGCCT-TCGTACCTG
1 CCGACGTCGCCGTCCTACAGCCCCACGTCGCCTCT-GTACCTG
152926 CCGACG
1 CCGACG
152932 CTGCCGCAGT
Statistics
Matches: 73, Mismatches: 8, Indels: 18
0.74 0.08 0.18
Matches are distributed among these distances:
41 4 0.05
42 64 0.88
43 5 0.07
ACGTcount: A:0.11, C:0.47, G:0.22, T:0.20
Consensus pattern (42 bp):
CCGACGTCGCCGTCCTACAGCCCCACGTCGCCTCTGTACCTG
Left flanking sequence: Indices 152300 -- 152799
AGGACGACAAGATCCAGTTCGACGAGGGTGGTGCGTTCTCGCCCATCCACACCGCCCAGGTGGGC
GAGTCCGGTGGGTTGACTTCGTACGGAGGCATGCCTCAGCTGCCTGGGGCGGCCACGTCGCCGTT
CAACTTCCCGACTTCGCCGTCGTTCCTGGGAGCTACGCTGCCGGGTTACGGTGGTGTCACCTCGC
CTCTGTACTCGCCTACGTCGCCGCTGTACTCTCCCACGTCCCCTTCGTACTCGCCTACGTCGCCC
TCGTACAGCCCGACGTCTCCCCTGTACAGTCCCACGTCTCCTCTGTACTCGCCGACGTCCCCTTC
GTACAGTCCCACCTCGCCTCTGTACTCGCCGACGTCGCCGTCTTACAGCCCGACGTCGCCGCTGT
ACTCGCCCACTTCGCCGTCGTACTCGCCTACGTCGCCGTCGTACTCCCCCACGCTGCCGTCGTAC
TCGCCTACGTCGCCCAGCTACTCGCCGACGTCGCCTTCTTACAGC
Right flanking sequence: Indices 152932 -- 153431
CTGCCGCAGTACCTGCCCACGTCGCCGCAGTACAGCCCCACTCTGCCCAGCTACTCGCCTGGGTC
GCCGCAGTACACCCCTCCGGAGCCCAAGAAGGAAGAGGAAAAGTAACCTGTTTGATGATTGTACT
ATTAAAACCAAAAAAATGCACTAATACTTCATATAGAAATTCACGAAACATTAATCATTTTGGTG
TACAATCAACATAGTAGATCACTTCTTACATACCGTGGCGTGGTCAACGAACGCTTCATACGACG
GACAGAACTGCTCGCACGCCTTACAAAACCCGGGTTTCTCGGCCCCTCCGTTCCTGATTGCATTG
TAGTGGACAGTCATGTGTCGTTTTAGGGTGTAGGGGCGGCTGAACCGTGGCGTGGTACAAATTGG
GTTGTTTTCGTGGTAAAACGGGCAAACGTTGGACCCCAGAGACTTATTTTGCTCCACTTGCACAT
TCTTACTAGCTTCCCGCTCCACGCTGGTGGCCTTTTTTAATTTCT
Found at i:152900 original size:84 final size:82
Alignment explanation
Indices: 152674--152958 Score: 260
Period size: 84 Copynumber: 3.4 Consensus size: 82
152664 GTCTTACAGC
* * * * **
152674 CCGACGTCGCCGCTGTACTCGCCCACTTCGCCGTCGTACTCGCCTACGTCGCCGTCGTACTCCCC
1 CCGACGTCGCCGCAGTACTCGCCCACGTCGCCGTCGTACT-GCCGACGTCGCCGTCCTACAGCCC
*
152739 CACGCTGCCGTC-GTA-CTCG
65 CAC-CT-CCCTCTGTACCT-G
* * * * *
152758 CCTACGTCGCC-CAGCTACTCGCCGACGTCGCCTTCTTACAGCCCGACGTCGCCGTCCTACAGCC
1 CCGACGTCGCCGCAG-TACTCGCCCACGTCGCCGTCGTACTG-CCGACGTCGCCGTCCTACAGCC
152822 CCACCTCTCCTCTGTACCTG
64 CCACCTC-CCTCTGTACCTG
* *
152842 CCGACG-CTGCCGCTGTACTCGCCCACGTCGCCGTCGTACCTGCCGACGTCGCCTTCCTACAGCC
1 CCGACGTC-GCCGCAGTACTCGCCCACGTCGCCGTCGTA-CTGCCGACGTCGCCGTCCTACAGCC
* *
152906 CGACGTCGCCT-TCGTACCTG
64 CCACCTC-CCTCT-GTACCTG
152926 CCGACG-CTGCCGCAGTAC-CTGCCCACGTCGCCG
1 CCGACGTC-GCCGCAGTACTC-GCCCACGTCGCCG
152959 CAGTACAGCC
Statistics
Matches: 168, Mismatches: 23, Indels: 20
0.80 0.11 0.09
Matches are distributed among these distances:
82 1 0.01
83 11 0.07
84 150 0.89
85 6 0.04
ACGTcount: A:0.11, C:0.47, G:0.22, T:0.20
Consensus pattern (82 bp):
CCGACGTCGCCGCAGTACTCGCCCACGTCGCCGTCGTACTGCCGACGTCGCCGTCCTACAGCCCC
ACCTCCCTCTGTACCTG
Left flanking sequence: Indices 152174 -- 152673
CGCCGTTGGGTACCGGTGCGTTTGACGTCATGGTGGACGACAACATGCTTCAGGAGGCGCCTGGC
GTCACTGTCGAGGGCGAGTACGAGGATGGCGGTGCCACCCCGTACCGCGACTACGACATGGAGGA
CGACAAGATCCAGTTCGACGAGGGTGGTGCGTTCTCGCCCATCCACACCGCCCAGGTGGGCGAGT
CCGGTGGGTTGACTTCGTACGGAGGCATGCCTCAGCTGCCTGGGGCGGCCACGTCGCCGTTCAAC
TTCCCGACTTCGCCGTCGTTCCTGGGAGCTACGCTGCCGGGTTACGGTGGTGTCACCTCGCCTCT
GTACTCGCCTACGTCGCCGCTGTACTCTCCCACGTCCCCTTCGTACTCGCCTACGTCGCCCTCGT
ACAGCCCGACGTCTCCCCTGTACAGTCCCACGTCTCCTCTGTACTCGCCGACGTCCCCTTCGTAC
AGTCCCACCTCGCCTCTGTACTCGCCGACGTCGCCGTCTTACAGC
Right flanking sequence: Indices 152959 -- 153458
CAGTACAGCCCCACTCTGCCCAGCTACTCGCCTGGGTCGCCGCAGTACACCCCTCCGGAGCCCAA
GAAGGAAGAGGAAAAGTAACCTGTTTGATGATTGTACTATTAAAACCAAAAAAATGCACTAATAC
TTCATATAGAAATTCACGAAACATTAATCATTTTGGTGTACAATCAACATAGTAGATCACTTCTT
ACATACCGTGGCGTGGTCAACGAACGCTTCATACGACGGACAGAACTGCTCGCACGCCTTACAAA
ACCCGGGTTTCTCGGCCCCTCCGTTCCTGATTGCATTGTAGTGGACAGTCATGTGTCGTTTTAGG
GTGTAGGGGCGGCTGAACCGTGGCGTGGTACAAATTGGGTTGTTTTCGTGGTAAAACGGGCAAAC
GTTGGACCCCAGAGACTTATTTTGCTCCACTTGCACATTCTTACTAGCTTCCCGCTCCACGCTGG
TGGCCTTTTTTAATTTCTTGGTAGGTCGCTCGTGAGCTTTCTCAA
Found at i:152929 original size:21 final size:21
Alignment explanation
Indices: 152866--152957 Score: 91
Period size: 21 Copynumber: 4.4 Consensus size: 21
152856 GTACTCGCCC
*
152866 ACGTCGCCGTCGTACCTGCCG
1 ACGTCGCCTTCGTACCTGCCG
* *
152887 ACGTCGCCTTCCTA-CAGCCCG
1 ACGTCGCCTTCGTACCTG-CCG
152908 ACGTCGCCTTCGTACCTGCCG
1 ACGTCGCCTTCGTACCTGCCG
* *
152929 ACG-CTGCC-GCAGTACCTGCCC
1 ACGTC-GCCTTC-GTACCTGCCG
152950 ACGTCGCC
1 ACGTCGCC
152958 GCAGTACAGC
Statistics
Matches: 59, Mismatches: 7, Indels: 10
0.78 0.09 0.13
Matches are distributed among these distances:
20 4 0.07
21 52 0.88
22 3 0.05
ACGTcount: A:0.12, C:0.46, G:0.24, T:0.18
Consensus pattern (21 bp):
ACGTCGCCTTCGTACCTGCCG
Left flanking sequence: Indices 152366 -- 152865
AGTCCGGTGGGTTGACTTCGTACGGAGGCATGCCTCAGCTGCCTGGGGCGGCCACGTCGCCGTTC
AACTTCCCGACTTCGCCGTCGTTCCTGGGAGCTACGCTGCCGGGTTACGGTGGTGTCACCTCGCC
TCTGTACTCGCCTACGTCGCCGCTGTACTCTCCCACGTCCCCTTCGTACTCGCCTACGTCGCCCT
CGTACAGCCCGACGTCTCCCCTGTACAGTCCCACGTCTCCTCTGTACTCGCCGACGTCCCCTTCG
TACAGTCCCACCTCGCCTCTGTACTCGCCGACGTCGCCGTCTTACAGCCCGACGTCGCCGCTGTA
CTCGCCCACTTCGCCGTCGTACTCGCCTACGTCGCCGTCGTACTCCCCCACGCTGCCGTCGTACT
CGCCTACGTCGCCCAGCTACTCGCCGACGTCGCCTTCTTACAGCCCGACGTCGCCGTCCTACAGC
CCCACCTCTCCTCTGTACCTGCCGACGCTGCCGCTGTACTCGCCC
Right flanking sequence: Indices 152958 -- 153457
GCAGTACAGCCCCACTCTGCCCAGCTACTCGCCTGGGTCGCCGCAGTACACCCCTCCGGAGCCCA
AGAAGGAAGAGGAAAAGTAACCTGTTTGATGATTGTACTATTAAAACCAAAAAAATGCACTAATA
CTTCATATAGAAATTCACGAAACATTAATCATTTTGGTGTACAATCAACATAGTAGATCACTTCT
TACATACCGTGGCGTGGTCAACGAACGCTTCATACGACGGACAGAACTGCTCGCACGCCTTACAA
AACCCGGGTTTCTCGGCCCCTCCGTTCCTGATTGCATTGTAGTGGACAGTCATGTGTCGTTTTAG
GGTGTAGGGGCGGCTGAACCGTGGCGTGGTACAAATTGGGTTGTTTTCGTGGTAAAACGGGCAAA
CGTTGGACCCCAGAGACTTATTTTGCTCCACTTGCACATTCTTACTAGCTTCCCGCTCCACGCTG
GTGGCCTTTTTTAATTTCTTGGTAGGTCGCTCGTGAGCTTTCTCA
Found at i:152954 original size:42 final size:40
Alignment explanation
Indices: 152835--152958 Score: 142
Period size: 42 Copynumber: 3.0 Consensus size: 40
152825 CCTCTCCTCT
152835 GTACCTGCCGACGCTGCCGCTGTACTCGCCCACGTCGCCGTC
1 GTACCTGCCGACGCTGCCGC-GTACT-GCCCACGTCGCCGTC
* * * *
152877 GTACCTGCCGACG-TCGCCTTCCTACAGCCCGACGTCGCCTTC
1 GTACCTGCCGACGCT-GCC-GCGTACTGCCC-ACGTCGCCGTC
152919 GTACCTGCCGACGCTGCCGCAGTACCTGCCCACGTCGCCG
1 GTACCTGCCGACGCTGCCGC-GTA-CTGCCCACGTCGCCG
152959 CAGTACAGCC
Statistics
Matches: 68, Mismatches: 8, Indels: 12
0.77 0.09 0.14
Matches are distributed among these distances:
41 6 0.09
42 55 0.81
43 7 0.10
ACGTcount: A:0.11, C:0.45, G:0.25, T:0.19
Consensus pattern (40 bp):
GTACCTGCCGACGCTGCCGCGTACTGCCCACGTCGCCGTC
Left flanking sequence: Indices 152335 -- 152834
TTCTCGCCCATCCACACCGCCCAGGTGGGCGAGTCCGGTGGGTTGACTTCGTACGGAGGCATGCC
TCAGCTGCCTGGGGCGGCCACGTCGCCGTTCAACTTCCCGACTTCGCCGTCGTTCCTGGGAGCTA
CGCTGCCGGGTTACGGTGGTGTCACCTCGCCTCTGTACTCGCCTACGTCGCCGCTGTACTCTCCC
ACGTCCCCTTCGTACTCGCCTACGTCGCCCTCGTACAGCCCGACGTCTCCCCTGTACAGTCCCAC
GTCTCCTCTGTACTCGCCGACGTCCCCTTCGTACAGTCCCACCTCGCCTCTGTACTCGCCGACGT
CGCCGTCTTACAGCCCGACGTCGCCGCTGTACTCGCCCACTTCGCCGTCGTACTCGCCTACGTCG
CCGTCGTACTCCCCCACGCTGCCGTCGTACTCGCCTACGTCGCCCAGCTACTCGCCGACGTCGCC
TTCTTACAGCCCGACGTCGCCGTCCTACAGCCCCACCTCTCCTCT
Right flanking sequence: Indices 152959 -- 153458
CAGTACAGCCCCACTCTGCCCAGCTACTCGCCTGGGTCGCCGCAGTACACCCCTCCGGAGCCCAA
GAAGGAAGAGGAAAAGTAACCTGTTTGATGATTGTACTATTAAAACCAAAAAAATGCACTAATAC
TTCATATAGAAATTCACGAAACATTAATCATTTTGGTGTACAATCAACATAGTAGATCACTTCTT
ACATACCGTGGCGTGGTCAACGAACGCTTCATACGACGGACAGAACTGCTCGCACGCCTTACAAA
ACCCGGGTTTCTCGGCCCCTCCGTTCCTGATTGCATTGTAGTGGACAGTCATGTGTCGTTTTAGG
GTGTAGGGGCGGCTGAACCGTGGCGTGGTACAAATTGGGTTGTTTTCGTGGTAAAACGGGCAAAC
GTTGGACCCCAGAGACTTATTTTGCTCCACTTGCACATTCTTACTAGCTTCCCGCTCCACGCTGG
TGGCCTTTTTTAATTTCTTGGTAGGTCGCTCGTGAGCTTTCTCAA
Found at i:152958 original size:21 final size:20
Alignment explanation
Indices: 152835--152964 Score: 79
Period size: 21 Copynumber: 6.2 Consensus size: 20
152825 CCTCTCCTCT
*
152835 GTACCTGCCGACG-CTGCCGC
1 GTACCTGCCCACGTC-GCCGC
152855 TGTA-CTCGCCCACGTCGCCGTC
1 -GTACCT-GCCCACGTCGCCG-C
* *
152877 GTACCTGCCGACGTCGCCTTC
1 GTACCTGCCCACGTCGCC-GC
* * *
152898 CTA-CAGCCCGACGTCGCCTTC
1 GTACCTGCCC-ACGTCGCC-GC
*
152919 GTACCTGCCGACG-CTGCCGC
1 GTACCTGCCCACGTC-GCCGC
152939 AGTACCTGCCCACGTCGCCGC
1 -GTACCTGCCCACGTCGCCGC
152960 AGTAC
1 -GTAC
152965 AGCCCCACTC
Statistics
Matches: 88, Mismatches: 11, Indels: 20
0.74 0.09 0.17
Matches are distributed among these distances:
20 8 0.09
21 71 0.81
22 9 0.10
ACGTcount: A:0.12, C:0.45, G:0.25, T:0.18
Consensus pattern (20 bp):
GTACCTGCCCACGTCGCCGC
Left flanking sequence: Indices 152335 -- 152834
TTCTCGCCCATCCACACCGCCCAGGTGGGCGAGTCCGGTGGGTTGACTTCGTACGGAGGCATGCC
TCAGCTGCCTGGGGCGGCCACGTCGCCGTTCAACTTCCCGACTTCGCCGTCGTTCCTGGGAGCTA
CGCTGCCGGGTTACGGTGGTGTCACCTCGCCTCTGTACTCGCCTACGTCGCCGCTGTACTCTCCC
ACGTCCCCTTCGTACTCGCCTACGTCGCCCTCGTACAGCCCGACGTCTCCCCTGTACAGTCCCAC
GTCTCCTCTGTACTCGCCGACGTCCCCTTCGTACAGTCCCACCTCGCCTCTGTACTCGCCGACGT
CGCCGTCTTACAGCCCGACGTCGCCGCTGTACTCGCCCACTTCGCCGTCGTACTCGCCTACGTCG
CCGTCGTACTCCCCCACGCTGCCGTCGTACTCGCCTACGTCGCCCAGCTACTCGCCGACGTCGCC
TTCTTACAGCCCGACGTCGCCGTCCTACAGCCCCACCTCTCCTCT
Right flanking sequence: Indices 152965 -- 153464
AGCCCCACTCTGCCCAGCTACTCGCCTGGGTCGCCGCAGTACACCCCTCCGGAGCCCAAGAAGGA
AGAGGAAAAGTAACCTGTTTGATGATTGTACTATTAAAACCAAAAAAATGCACTAATACTTCATA
TAGAAATTCACGAAACATTAATCATTTTGGTGTACAATCAACATAGTAGATCACTTCTTACATAC
CGTGGCGTGGTCAACGAACGCTTCATACGACGGACAGAACTGCTCGCACGCCTTACAAAACCCGG
GTTTCTCGGCCCCTCCGTTCCTGATTGCATTGTAGTGGACAGTCATGTGTCGTTTTAGGGTGTAG
GGGCGGCTGAACCGTGGCGTGGTACAAATTGGGTTGTTTTCGTGGTAAAACGGGCAAACGTTGGA
CCCCAGAGACTTATTTTGCTCCACTTGCACATTCTTACTAGCTTCCCGCTCCACGCTGGTGGCCT
TTTTTAATTTCTTGGTAGGTCGCTCGTGAGCTTTCTCAACGTCAC
Found at i:154093 original size:12 final size:12
Alignment explanation
Indices: 154076--154101 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
154066 CTTCTGGTTA
154076 GCGGGGGCAGCG
1 GCGGGGGCAGCG
154088 GCGGGGGCAGCG
1 GCGGGGGCAGCG
154100 GC
1 GC
154102 AGTGTTAGAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.08, C:0.27, G:0.65, T:0.00
Consensus pattern (12 bp):
GCGGGGGCAGCG
Left flanking sequence: Indices 153576 -- 154075
GGTCGTCAAGCAGCGCCAACAGGGCATCAACCGAGTCCTGCCATTGAGAAATAAGAGTGAACTGC
GTCATGACCAGCAAATTTTCCTTTTCGTCAGCGGGCTTAAGAGGTACTAGGGTGCGAGCCATAGC
CGTGGAGTGCAATTACATCTGAGATACCTACCCCTTTTATAGTAAGTTATCACGCTTTCCTGTCC
GTCGCGTCTCACTTACCAAAACGGTATGCATCATCCCACGCGCGGGGAGCACACCTGAGGTGCAA
AAATACAACACGAAGAATCTAGAACAATCATTAGTTCCAATAACGCTGGACTACAGTATTTCTAA
AACGTGTTGTATTATATTGCGTGTCTATGGCCAATAACCAAGGTATCGCAATCTATAAATTATAT
CAACCGAAACTAACTCAACGGGTATGCTAATGTACAAAGAAGGAGAATGGGATCCAGTCCCAATA
CCAGTCTAACTAATTTAGTACATGGTTCTTCTCTTCTTCTGGTTA
Right flanking sequence: Indices 154102 -- 154601
AGTGTTAGAGTTGCCACCGAACAAGCCAAGGACAAAGTCAATGAGAGCCTTGAAGATGTTACCAA
TGTTCTCGCCCAACCACTTGAGAGCAGCGTCAATCAAGCCGGCGTTCTTAGCCCACTGGTAGAGG
GTCTGCACCAACGACCAGATGTAAGAAGAAGCCTGCTGCAACAAAGACCAGAACTGGTCAGGGTT
GGTCTTGATCCAGTTGACAACCCACGAGAAGACAGACTGGATGATACCAGAGTTCCACACGGCGG
AGACAATGTTGGCCAAGATCTCGCCGAAGTTGATGTCATCTCTGGCCATCAAGCCAGCGAACTCG
TCAACCATCTCGTGGACCTCACGCTTCTGGTTAGAACCACCGGTCAACATGTTGAGGACGGTGTT
GATACCCTCCTTCACCAAGTTCCAGATGGCGGACTGCAAGCCCTGGTCAGTGACCAACTTGTTGA
AGATGTTCTGCAACAAACCAGAGTTCCAGATGGCAGAAATCAAGT
Done.