Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: C10913
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 58816
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Found at i:10077 original size:12 final size:12
Alignment explanation
Indices: 10062--10093 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
10052 ATCATCGTTG
10062 TGATCGTCATCA
1 TGATCGTCATCA
*
10074 TGATCATCATCA
1 TGATCGTCATCA
10086 TGATCGTC
1 TGATCGTC
10094 GTCGTTATCG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.25, C:0.25, G:0.16, T:0.34
Consensus pattern (12 bp):
TGATCGTCATCA
Left flanking sequence: Indices 9562 -- 10061
CCGCATTGTTTGCCTGGCTGGTTTCGCTGTTTCTGTCCGAGCTGTCTCCAGAGCCCCCATTGTTC
AGGTTGCTGGTGGTACCGTCACTGGAGTCCTTGGTGTCAGCGCCGTTTTGCTTGGCACCAGTATC
GTTCTGAGTAGCAGCACTCTTGGGCTCGGCATCGCTATGCTTCGCTTGAGCCTCCTGAGTAGTCT
TGCTGAGGGCGCTTGACTCGGTAGTTCTCGACCGATGACGTTCATCGTCATTGTCGTGGTGGTAG
TCTTGGCCGTTCTTCCAAGGTGTGATGGAAGCCATCGGAATCTGACCGTTACTATCGTCGTACAT
AGAGCTGTAAACCGAAGCCATCGAATCTGCGTAGCTTTGGTCGTTGCCGTATCTGTTGTGGAGGA
TCTTGTCCATCAACGAAGGCTTTGCCGTGTAGTATTTAGTGCCGGCAGACCATTGGATGATATCG
TCATCGTCATCGTCATGGTCGCTGTCGTGATCGTGATCATCGTTG
Right flanking sequence: Indices 10094 -- 10593
GTCGTTATCGTGGTTGTAGTCTTGGCTGTTCTTCCAAGGGGTGATGGATGCCATAGGGATCTTGC
CATTAGTGTCATCGTACATTGAGCTGTACACAGAAACAACCGAGTCGGCGTAGCTCTTGTCGTTG
CCATATCTGTTGTGGAGAATCTTATCCATCAAAGACGGACTGGCCGTGTAGTACTTGGTACCGGC
TGACCATTGGATAAGATCGTCAGCGAGAACAGGAGCGGAAAGAAGAAAGAGTTGGTAAAACATGT
TTGGGTTCTTCGATAATCATGGTGCCTTATATAGTTGAACGCTACTATGTGCGTACAAGTCAAGG
CGTCAACAAGCATGGCAATCTGCAGCTGCTACAACTATTCCAGCCATTAGCTCCACAATTCGCAC
TAATCGGTCAAGGCTGTGCTGGCGTTCTGTGGGGAAACTCCGGTTCTGGTCATCAATATCTGTAA
CTAAGGGACAAGCCCATTGAAGTGACTATGTAGCTCTACTTCCCG
Found at i:58750 original size:26 final size:26
Alignment explanation
Indices: 58714--58816 Score: 197
Period size: 26 Copynumber: 4.0 Consensus size: 26
58704 AAAAAAGAGA
*
58714 TTCTGAGCATTTGCGGTTAGAATCTT
1 TTCTCAGCATTTGCGGTTAGAATCTT
58740 TTCTCAGCATTTGCGGTTAGAATCTT
1 TTCTCAGCATTTGCGGTTAGAATCTT
58766 TTCTCAGCATTTGCGGTTAGAATCTT
1 TTCTCAGCATTTGCGGTTAGAATCTT
58792 TTCTCAGCATTTGCGGTTAGAATCT
1 TTCTCAGCATTTGCGGTTAGAATCT
Statistics
Matches: 76, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
26 76 1.00
ACGTcount: A:0.19, C:0.18, G:0.20, T:0.42
Consensus pattern (26 bp):
TTCTCAGCATTTGCGGTTAGAATCTT
Left flanking sequence: Indices 58214 -- 58713
TCCTAAGAGGACATGTAGTAGTTCAACCGAATTGATTCAGTCTACCAAATAGCAGCCTTCACATT
TAGAATGTTGATCCTATTTAGGCAACAAGTTTCCATGGAATTTGCAAAATTTCGCAATTTTTTCA
TATCATTTTTACGAAATCCTGCGATTTTGCAGTTGAACATGCGTACCAAACAAATAGAGGTCTAT
TACATGCGTCACCGAACAACAAAAGAATTGATTCGAGACCGAGAATAACACCAACAGCGCCTATG
GGGAAAGATCTAACCATACAGACCCGATTTCGAAAAGATTCTACCCACAACCTTTGTGTAAAAGA
TTCTACCCGAATCACACCCAAAGCAAAAAGATTCTAACCAAATGTCAGGTAAAGGTTCTAACCGA
AACACCACCAGGCAGCATTTGCGGTGAGAAAAGGTTCTAACAAAATTGCACCGAATTGCAGAAGG
GTTCTAACCAAGTAGGTCTGGTATAGATTCTAACAAAAAAAGAGA
Right flanking sequence: None
Done.