Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: C10871
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 48449
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.22
Found at i:250 original size:23 final size:21
Alignment explanation
Indices: 220--288 Score: 65
Period size: 19 Copynumber: 3.2 Consensus size: 21
210 AATGCATCAG
220 TGAATGCTATCCATTTCCAGCA
1 TGAATGCTATCCATTTCCA-CA
242 TTGAATGCTAT-C-TTT-CACCA
1 -TGAATGCTATCCATTTCCA-CA
262 TGAATGCTA-CCAATTTCCACA
1 TGAATGCTATCC-ATTTCCACA
283 CTGAAT
1 -TGAAT
289 CTCAATACCA
Statistics
Matches: 40, Mismatches: 1, Indels: 11
0.77 0.02 0.21
Matches are distributed among these distances:
19 10 0.25
20 4 0.10
21 8 0.20
22 8 0.20
23 10 0.25
ACGTcount: A:0.29, C:0.26, G:0.12, T:0.33
Consensus pattern (21 bp):
TGAATGCTATCCATTTCCACA
Left flanking sequence: Indices 1 -- 219
CATACGTAACTTATACTTCGACCTTCAAATAGTTATTTTTGAGTGCATTTTTGGACTTCCGGAAT
TTTCTTATTCCGAATAATTATGTAACGACTGTACTCCAGGAGATAACGCGGCAAGTGTCACATCA
AGTGTTACATCACCCGATCCTAGGAGTAGTACATCAAAATCACCGTACTATCGACATGGATTACC
ATTCTACGCTATTTAATGCATCAG
Right flanking sequence: Indices 289 -- 788
CTCAATACCACCCCATACTCTACACCAAGTTGTTCCAGATAATCATTCCCATAGTCATTATATAC
ATTACAAACCCTGCTCGGCTCTTCTTCTGTCTCTCTCCTCAGCAATGGTCAACTTGATACCCTTA
CCCTTGGGCAATGAGATCCAGGGCTTGCTGGCCTCGTCACCGATGATGAAAACGTTGTTCATTCT
GGTGACAAAGGTCTGGTCGCGAGCGTCCTTGATGTGGACCAAGTCAAAACCACCCTGGTGGTGCT
CCTGGTGGACAATGGTGCCGACTCTACCCATGGATCTACCACCGGTAACCATAACCAACTTACCG
GTCTCGAACTTCATGAAGTCGGTCATGCGCCCGGTCTCCAAGTCGATCTTGATGGTGTCGTTGCG
CTTGACCAACGGGTCGGGGTATCTAATGGTACGGCCGTCGTGGGTGATGGCGTAGGGGATACCTC
TCTTGCCGAGACGCACGTCCTTGACCTTGGCCAACTTGTAGGCAG
Found at i:267 original size:19 final size:23
Alignment explanation
Indices: 220--281 Score: 71
Period size: 19 Copynumber: 2.9 Consensus size: 23
210 AATGCATCAG
*
220 TGAATGCTATCCATTTCCAGCAT
1 TGAATGCTATCCATTTCCACCAT
243 TGAATGCTAT-C-TTT-CACCA-
1 TGAATGCTATCCATTTCCACCAT
262 TGAATGCTA-CCAATTTCCAC
1 TGAATGCTATCC-ATTTCCAC
282 ACTGAATCTC
Statistics
Matches: 34, Mismatches: 1, Indels: 9
0.77 0.02 0.20
Matches are distributed among these distances:
19 10 0.29
20 4 0.12
21 6 0.18
22 4 0.12
23 10 0.29
ACGTcount: A:0.27, C:0.27, G:0.11, T:0.34
Consensus pattern (23 bp):
TGAATGCTATCCATTTCCACCAT
Left flanking sequence: Indices 1 -- 219
CATACGTAACTTATACTTCGACCTTCAAATAGTTATTTTTGAGTGCATTTTTGGACTTCCGGAAT
TTTCTTATTCCGAATAATTATGTAACGACTGTACTCCAGGAGATAACGCGGCAAGTGTCACATCA
AGTGTTACATCACCCGATCCTAGGAGTAGTACATCAAAATCACCGTACTATCGACATGGATTACC
ATTCTACGCTATTTAATGCATCAG
Right flanking sequence: Indices 282 -- 781
ACTGAATCTCAATACCACCCCATACTCTACACCAAGTTGTTCCAGATAATCATTCCCATAGTCAT
TATATACATTACAAACCCTGCTCGGCTCTTCTTCTGTCTCTCTCCTCAGCAATGGTCAACTTGAT
ACCCTTACCCTTGGGCAATGAGATCCAGGGCTTGCTGGCCTCGTCACCGATGATGAAAACGTTGT
TCATTCTGGTGACAAAGGTCTGGTCGCGAGCGTCCTTGATGTGGACCAAGTCAAAACCACCCTGG
TGGTGCTCCTGGTGGACAATGGTGCCGACTCTACCCATGGATCTACCACCGGTAACCATAACCAA
CTTACCGGTCTCGAACTTCATGAAGTCGGTCATGCGCCCGGTCTCCAAGTCGATCTTGATGGTGT
CGTTGCGCTTGACCAACGGGTCGGGGTATCTAATGGTACGGCCGTCGTGGGTGATGGCGTAGGGG
ATACCTCTCTTGCCGAGACGCACGTCCTTGACCTTGGCCAACTTG
Found at i:6422 original size:22 final size:22
Alignment explanation
Indices: 6397--6476 Score: 151
Period size: 22 Copynumber: 3.6 Consensus size: 22
6387 GTAAGAGTGG
6397 TAAAGGGTGTGATAAAGTGTGA
1 TAAAGGGTGTGATAAAGTGTGA
6419 TAAAGGGTGTGATAAAGTGTGA
1 TAAAGGGTGTGATAAAGTGTGA
6441 TAAAGGGTGTGATAAAGTGTGA
1 TAAAGGGTGTGATAAAGTGTGA
6463 TAAGAGGGTGTGAT
1 TAA-AGGGTGTGAT
6477 GTAGTCTGTC
Statistics
Matches: 57, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
22 47 0.82
23 10 0.18
ACGTcount: A:0.35, C:0.00, G:0.38, T:0.28
Consensus pattern (22 bp):
TAAAGGGTGTGATAAAGTGTGA
Left flanking sequence: Indices 5897 -- 6396
GTGTGTGGAGACCGGGGAAGCGGTGTTCTTTTTGCGCCAATTGGTTCCGTTCTACGATCTCTTCA
AGTTGTTGTTGTCCGCGTGGTTGTTGGTGCCGATGGTGGCCAAGCTGCTGGAGGTGGACTCCACG
ACGCTGTTTGACGAAACCAAGCAGTGGGCGGCGTTTTCGGAGAACGGGGCCGGGCTCGTGTACTT
TGGCTACATCAAGCCCGCGATCTCGCGCGGTCTAGACCGCGTAGAGTTGCCCAACACGACGCAGA
CGGTGTTTTCGCTGTTCCCCGGCAGTTCCACCGCGGTGGATCTGCTGTATGTGATGGTGTCGCTG
TTGCGGCTGCGGTTGATGGGGCTGCCGCCGGCGGAGCCCGCCGAGGACGAGCTGGTGGTGGAGGT
CGAGGCTCCCGAGACCCCCGTGGCGCCGGCGCCGAAAAAGGGGTGGTTGTGGTAGAGCCTGCCCC
GGCGGCAGGTGTTTTTATAGTAATAGACCCAGGTGGTAAGAGTGG
Right flanking sequence: Indices 6477 -- 6976
GTAGTCTGTCGGTGTGTACGGTTGTGCTTACTGTAGGCAGCCTTGTGTGTCAGTGTCTACGTCAA
GGCTGTCATGTCTGAGGATATTGGGCCATGTCAAGCCAACAAGATCGATGTGTGTTACCACTCGT
ACTGTCTACTTACACGATAACCGTGTTTACTCGTGTTTACCCGTGTTCATGTTTACCCATGTTCA
TGTTTACTCTGTACTTCAGTATCTGTACCCATTGTACATACACAATACATTCCAATCACGCGTCG
GTGGTAGACCCAGACACGTCCTCCTGTCGGATAGGGTCCCTTGATGGCCGTCTACATGTCTGTCT
GTCTGCTACGTAAGCTCACTCAATTAGTTATTCCCCACTACTGTACGTATCACACGTTATCTCAC
ATTTATACAACGTCTCTTAACAAACCTGTGACGACGTACACATCTCACCGCTCACCACTGTCCCA
CACAATCAATCCTATCCCCACATCACCACAGTAGACCACTGTTTA
Found at i:6428 original size:12 final size:12
Alignment explanation
Indices: 6397--6476 Score: 109
Period size: 10 Copynumber: 7.1 Consensus size: 12
6387 GTAAGAGTGG
6397 TAAAGGGTGTGA
1 TAAAGGGTGTGA
6409 TAAA--GTGTGA
1 TAAAGGGTGTGA
6419 TAAAGGGTGTGA
1 TAAAGGGTGTGA
6431 TAAA--GTGTGA
1 TAAAGGGTGTGA
6441 TAAAGGGTGTGA
1 TAAAGGGTGTGA
6453 TAAA--GTGTGA
1 TAAAGGGTGTGA
6463 TAAGAGGGTGTGA
1 TAA-AGGGTGTGA
6476 T
1 T
6477 GTAGTCTGTC
Statistics
Matches: 61, Mismatches: 0, Indels: 13
0.82 0.00 0.18
Matches are distributed among these distances:
10 29 0.48
11 1 0.02
12 24 0.39
13 7 0.11
ACGTcount: A:0.35, C:0.00, G:0.38, T:0.28
Consensus pattern (12 bp):
TAAAGGGTGTGA
Left flanking sequence: Indices 5897 -- 6396
GTGTGTGGAGACCGGGGAAGCGGTGTTCTTTTTGCGCCAATTGGTTCCGTTCTACGATCTCTTCA
AGTTGTTGTTGTCCGCGTGGTTGTTGGTGCCGATGGTGGCCAAGCTGCTGGAGGTGGACTCCACG
ACGCTGTTTGACGAAACCAAGCAGTGGGCGGCGTTTTCGGAGAACGGGGCCGGGCTCGTGTACTT
TGGCTACATCAAGCCCGCGATCTCGCGCGGTCTAGACCGCGTAGAGTTGCCCAACACGACGCAGA
CGGTGTTTTCGCTGTTCCCCGGCAGTTCCACCGCGGTGGATCTGCTGTATGTGATGGTGTCGCTG
TTGCGGCTGCGGTTGATGGGGCTGCCGCCGGCGGAGCCCGCCGAGGACGAGCTGGTGGTGGAGGT
CGAGGCTCCCGAGACCCCCGTGGCGCCGGCGCCGAAAAAGGGGTGGTTGTGGTAGAGCCTGCCCC
GGCGGCAGGTGTTTTTATAGTAATAGACCCAGGTGGTAAGAGTGG
Right flanking sequence: Indices 6477 -- 6976
GTAGTCTGTCGGTGTGTACGGTTGTGCTTACTGTAGGCAGCCTTGTGTGTCAGTGTCTACGTCAA
GGCTGTCATGTCTGAGGATATTGGGCCATGTCAAGCCAACAAGATCGATGTGTGTTACCACTCGT
ACTGTCTACTTACACGATAACCGTGTTTACTCGTGTTTACCCGTGTTCATGTTTACCCATGTTCA
TGTTTACTCTGTACTTCAGTATCTGTACCCATTGTACATACACAATACATTCCAATCACGCGTCG
GTGGTAGACCCAGACACGTCCTCCTGTCGGATAGGGTCCCTTGATGGCCGTCTACATGTCTGTCT
GTCTGCTACGTAAGCTCACTCAATTAGTTATTCCCCACTACTGTACGTATCACACGTTATCTCAC
ATTTATACAACGTCTCTTAACAAACCTGTGACGACGTACACATCTCACCGCTCACCACTGTCCCA
CACAATCAATCCTATCCCCACATCACCACAGTAGACCACTGTTTA
Found at i:6661 original size:16 final size:16
Alignment explanation
Indices: 6640--6678 Score: 69
Period size: 16 Copynumber: 2.4 Consensus size: 16
6630 TGTTTACTCG
*
6640 TGTTTACCCGTGTTCA
1 TGTTTACCCATGTTCA
6656 TGTTTACCCATGTTCA
1 TGTTTACCCATGTTCA
6672 TGTTTAC
1 TGTTTAC
6679 TCTGTACTTC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.15, C:0.23, G:0.15, T:0.46
Consensus pattern (16 bp):
TGTTTACCCATGTTCA
Left flanking sequence: Indices 6140 -- 6639
GCCCAACACGACGCAGACGGTGTTTTCGCTGTTCCCCGGCAGTTCCACCGCGGTGGATCTGCTGT
ATGTGATGGTGTCGCTGTTGCGGCTGCGGTTGATGGGGCTGCCGCCGGCGGAGCCCGCCGAGGAC
GAGCTGGTGGTGGAGGTCGAGGCTCCCGAGACCCCCGTGGCGCCGGCGCCGAAAAAGGGGTGGTT
GTGGTAGAGCCTGCCCCGGCGGCAGGTGTTTTTATAGTAATAGACCCAGGTGGTAAGAGTGGTAA
AGGGTGTGATAAAGTGTGATAAAGGGTGTGATAAAGTGTGATAAAGGGTGTGATAAAGTGTGATA
AGAGGGTGTGATGTAGTCTGTCGGTGTGTACGGTTGTGCTTACTGTAGGCAGCCTTGTGTGTCAG
TGTCTACGTCAAGGCTGTCATGTCTGAGGATATTGGGCCATGTCAAGCCAACAAGATCGATGTGT
GTTACCACTCGTACTGTCTACTTACACGATAACCGTGTTTACTCG
Right flanking sequence: Indices 6679 -- 7178
TCTGTACTTCAGTATCTGTACCCATTGTACATACACAATACATTCCAATCACGCGTCGGTGGTAG
ACCCAGACACGTCCTCCTGTCGGATAGGGTCCCTTGATGGCCGTCTACATGTCTGTCTGTCTGCT
ACGTAAGCTCACTCAATTAGTTATTCCCCACTACTGTACGTATCACACGTTATCTCACATTTATA
CAACGTCTCTTAACAAACCTGTGACGACGTACACATCTCACCGCTCACCACTGTCCCACACAATC
AATCCTATCCCCACATCACCACAGTAGACCACTGTTTACCCCATCCACTATAGACTCCCATTTTC
CATCTCCACATAGACCCCATCTCTTACATCCCTCCGATCTCTTGCTTCTCTTACATCCATCCCAT
TTCTTACATCCCTCCCATCTCTTACATCCCTCCCATCTCTCACTTCCCTCCCTTTCTTTCAACGC
CCCATCCTTACAATCCCCCATCCTTTCATCTCTCCCCCATCTCTC
Found at i:7033 original size:26 final size:26
Alignment explanation
Indices: 6982--7033 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
6972 GTTTACCCCA
*
6982 TCCACTATAGACTCCCATTTTCCATC
1 TCCACTATAGACTCCCATTTTACATC
7008 TCCAC-ATAGAC-CCCATCTCTTACATC
1 TCCACTATAGACTCCCAT-T-TTACATC
7034 CCTCCGATCT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
24 5 0.22
25 7 0.30
26 11 0.48
ACGTcount: A:0.25, C:0.40, G:0.04, T:0.31
Consensus pattern (26 bp):
TCCACTATAGACTCCCATTTTACATC
Left flanking sequence: Indices 6482 -- 6981
CTGTCGGTGTGTACGGTTGTGCTTACTGTAGGCAGCCTTGTGTGTCAGTGTCTACGTCAAGGCTG
TCATGTCTGAGGATATTGGGCCATGTCAAGCCAACAAGATCGATGTGTGTTACCACTCGTACTGT
CTACTTACACGATAACCGTGTTTACTCGTGTTTACCCGTGTTCATGTTTACCCATGTTCATGTTT
ACTCTGTACTTCAGTATCTGTACCCATTGTACATACACAATACATTCCAATCACGCGTCGGTGGT
AGACCCAGACACGTCCTCCTGTCGGATAGGGTCCCTTGATGGCCGTCTACATGTCTGTCTGTCTG
CTACGTAAGCTCACTCAATTAGTTATTCCCCACTACTGTACGTATCACACGTTATCTCACATTTA
TACAACGTCTCTTAACAAACCTGTGACGACGTACACATCTCACCGCTCACCACTGTCCCACACAA
TCAATCCTATCCCCACATCACCACAGTAGACCACTGTTTACCCCA
Right flanking sequence: Indices 7034 -- 7533
CCTCCGATCTCTTGCTTCTCTTACATCCATCCCATTTCTTACATCCCTCCCATCTCTTACATCCC
TCCCATCTCTCACTTCCCTCCCTTTCTTTCAACGCCCCATCCTTACAATCCCCCATCCTTTCATC
TCTCCCCCATCTCTCCCCCCTACATTCCTCCTTACTATCGTGTATGCTGCTATTTACAAGTTGAG
GTACTTTGCCACCGCGGCGCGGTCGTCGGCGGTGTCGAGGGCCGCGGTGTGGGCCGCCACCCGCA
GCGCGCGGGCCTTCTGCTGGTGCTTGGGCACAAACGCGTTCGGGAGCACCGTGGGCTGGTACAAC
CCGTCAAACGCCTCGCGCGGCTTGTGGGCGTCGGCGCCCACGCGGTTCTTTTCGAGGATCGCCTT
CATCTCCTCCACGTGGTCGCGCTCGCCCTCCTCCACGAGCTTGGGGTCGACCTCGGGCCACACAA
ACGGCTCGGCCATGTCGATCGTCATCTTCTTGTACTGGGGCCCGC
Found at i:7075 original size:18 final size:18
Alignment explanation
Indices: 7050--7120 Score: 106
Period size: 18 Copynumber: 3.9 Consensus size: 18
7040 ATCTCTTGCT
*
7050 TCTCTTACATCCATCCCA
1 TCTCTTACATCCCTCCCA
*
7068 TTTCTTACATCCCTCCCA
1 TCTCTTACATCCCTCCCA
7086 TCTCTTACATCCCTCCCA
1 TCTCTTACATCCCTCCCA
* *
7104 TCTCTCACTTCCCTCCC
1 TCTCTTACATCCCTCCC
7121 TTTCTTTCAA
Statistics
Matches: 48, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 48 1.00
ACGTcount: A:0.15, C:0.49, G:0.00, T:0.35
Consensus pattern (18 bp):
TCTCTTACATCCCTCCCA
Left flanking sequence: Indices 6550 -- 7049
TGTCTGAGGATATTGGGCCATGTCAAGCCAACAAGATCGATGTGTGTTACCACTCGTACTGTCTA
CTTACACGATAACCGTGTTTACTCGTGTTTACCCGTGTTCATGTTTACCCATGTTCATGTTTACT
CTGTACTTCAGTATCTGTACCCATTGTACATACACAATACATTCCAATCACGCGTCGGTGGTAGA
CCCAGACACGTCCTCCTGTCGGATAGGGTCCCTTGATGGCCGTCTACATGTCTGTCTGTCTGCTA
CGTAAGCTCACTCAATTAGTTATTCCCCACTACTGTACGTATCACACGTTATCTCACATTTATAC
AACGTCTCTTAACAAACCTGTGACGACGTACACATCTCACCGCTCACCACTGTCCCACACAATCA
ATCCTATCCCCACATCACCACAGTAGACCACTGTTTACCCCATCCACTATAGACTCCCATTTTCC
ATCTCCACATAGACCCCATCTCTTACATCCCTCCGATCTCTTGCT
Right flanking sequence: Indices 7121 -- 7620
TTTCTTTCAACGCCCCATCCTTACAATCCCCCATCCTTTCATCTCTCCCCCATCTCTCCCCCCTA
CATTCCTCCTTACTATCGTGTATGCTGCTATTTACAAGTTGAGGTACTTTGCCACCGCGGCGCGG
TCGTCGGCGGTGTCGAGGGCCGCGGTGTGGGCCGCCACCCGCAGCGCGCGGGCCTTCTGCTGGTG
CTTGGGCACAAACGCGTTCGGGAGCACCGTGGGCTGGTACAACCCGTCAAACGCCTCGCGCGGCT
TGTGGGCGTCGGCGCCCACGCGGTTCTTTTCGAGGATCGCCTTCATCTCCTCCACGTGGTCGCGC
TCGCCCTCCTCCACGAGCTTGGGGTCGACCTCGGGCCACACAAACGGCTCGGCCATGTCGATCGT
CATCTTCTTGTACTGGGGCCCGCGGTACCGCGCGTAGTCGTCGCCGCTGCGGTTGAACCGCGCGT
GCAACAACTGCACCGTCACGTTGAGCGCCCGCAACCCGTACACGT
Found at i:11896 original size:8 final size:8
Alignment explanation
Indices: 11872--11919 Score: 50
Period size: 8 Copynumber: 6.2 Consensus size: 8
11862 GAGGAGGGAG
11872 GGGGAGAA
1 GGGGAGAA
11880 GGAGGGAGAA
1 -G-GGGAGAA
11890 GGGGAGAA
1 GGGGAGAA
11898 --GG-GAA
1 GGGGAGAA
11903 -GGGAGAA
1 GGGGAGAA
11910 GGGGAGAA
1 GGGGAGAA
11918 GG
1 GG
11920 AAAGAAGGAA
Statistics
Matches: 35, Mismatches: 0, Indels: 9
0.80 0.00 0.20
Matches are distributed among these distances:
5 3 0.09
6 4 0.11
7 3 0.09
8 16 0.46
9 2 0.06
10 7 0.20
ACGTcount: A:0.38, C:0.00, G:0.62, T:0.00
Consensus pattern (8 bp):
GGGGAGAA
Left flanking sequence: Indices 11372 -- 11871
GGTGTTCTTTGGGCCCACCTACTACCAGCGGTTGCGGCACATGGTCGACGACAAGATCCACGCGC
GGGCCCGTGGTCCGGTGCAGGTGCTTACCCGGCAGCCGGTGGAGGGTCGGTCGCGTGACGGTGGG
TTGCGGTTCGGTGAAATGGAGCGTGATTGTATGATTGCCCACGGTGCCGCCGGCTTCTTGAAGGA
GCGGTTGATGGAGGCGTCCGACGCGTTCCGGGTGCACATCTGCGGGTCGTGTGGGTTGATGTCGG
TGATTGCCAACCTCAAGAAGAACCAGTTTGAGTGTCGGTCGTGCAAGAACAAGACGAACATTTAC
CAGATCCACATTCCCTATGCCGCCAAGTTGTTGTTCCAGGAGTTGATGGCGATGAACATCTCGCC
GCGGTTGTACACCGAGCGCCTGGGGGTGTCGGTGAGAGTCTAAACTGTATAATTAATAGAGACAA
GGGCGACCTTGCAACGAATAGAAAAGGAAAAGGAAGAGGAGGGAG
Right flanking sequence: Indices 11920 -- 12419
AAAGAAGGAAAGAAGGGATGAAGGGATGAAGGAAAGAAGGAAAGAAAGGGTTATTGCAAATTAAT
TCTAAAATAAGCGACTATTTAAACTCTGACAATGCCTTTCAAACCGGTACAATTTCTCGTCTATT
CAGGTGTTAGACTTAAGCCTTTGCACTGATGCGCATATCGCCAAATAGTTTGTCTACCACTTGCT
TTTCATGAAAGTGCTAATGTGAACGAACAAGATACCAATGGCGGGTGGCAACCGTCACAAAATTG
TCTGAGCACATACAATGCCCTGCCACCGCTTTCAAACTGGAAAACGGCCGGTTTGACGGTCCCCT
CTGTGACCAGAGGTGGCCATGCTACATCCAAGTGCTAAACATCGCGCCCAGCCGAAAACACACGC
GCTTGCTTACCACGCTTGTTTACCACGATTGTCTACCTCAGTCCCAGTTACTACACCCGCCGCTT
TGGAGTTTTAGGTTGATTTCCCGGGTTTTCTCCAAAGCGGTTGGC
Found at i:11905 original size:20 final size:19
Alignment explanation
Indices: 11859--11919 Score: 83
Period size: 20 Copynumber: 3.3 Consensus size: 19
11849 AAAGGAAAAG
11859 GAAGAGGAGGGAG--GGGGA
1 GAAG-GGAGGGAGAAGGGGA
11877 GAA-GGAGGGAGAAGGGGA
1 GAAGGGAGGGAGAAGGGGA
11895 GAAGGGAAGGGAGAAGGGGA
1 GAAGGG-AGGGAGAAGGGGA
11915 GAAGG
1 GAAGG
11920 AAAGAAGGAA
Statistics
Matches: 39, Mismatches: 0, Indels: 6
0.87 0.00 0.13
Matches are distributed among these distances:
16 8 0.21
18 11 0.28
19 2 0.05
20 18 0.46
ACGTcount: A:0.38, C:0.00, G:0.62, T:0.00
Consensus pattern (19 bp):
GAAGGGAGGGAGAAGGGGA
Left flanking sequence: Indices 11359 -- 11858
AGTTGATGGCGCAGGTGTTCTTTGGGCCCACCTACTACCAGCGGTTGCGGCACATGGTCGACGAC
AAGATCCACGCGCGGGCCCGTGGTCCGGTGCAGGTGCTTACCCGGCAGCCGGTGGAGGGTCGGTC
GCGTGACGGTGGGTTGCGGTTCGGTGAAATGGAGCGTGATTGTATGATTGCCCACGGTGCCGCCG
GCTTCTTGAAGGAGCGGTTGATGGAGGCGTCCGACGCGTTCCGGGTGCACATCTGCGGGTCGTGT
GGGTTGATGTCGGTGATTGCCAACCTCAAGAAGAACCAGTTTGAGTGTCGGTCGTGCAAGAACAA
GACGAACATTTACCAGATCCACATTCCCTATGCCGCCAAGTTGTTGTTCCAGGAGTTGATGGCGA
TGAACATCTCGCCGCGGTTGTACACCGAGCGCCTGGGGGTGTCGGTGAGAGTCTAAACTGTATAA
TTAATAGAGACAAGGGCGACCTTGCAACGAATAGAAAAGGAAAAG
Right flanking sequence: Indices 11920 -- 12419
AAAGAAGGAAAGAAGGGATGAAGGGATGAAGGAAAGAAGGAAAGAAAGGGTTATTGCAAATTAAT
TCTAAAATAAGCGACTATTTAAACTCTGACAATGCCTTTCAAACCGGTACAATTTCTCGTCTATT
CAGGTGTTAGACTTAAGCCTTTGCACTGATGCGCATATCGCCAAATAGTTTGTCTACCACTTGCT
TTTCATGAAAGTGCTAATGTGAACGAACAAGATACCAATGGCGGGTGGCAACCGTCACAAAATTG
TCTGAGCACATACAATGCCCTGCCACCGCTTTCAAACTGGAAAACGGCCGGTTTGACGGTCCCCT
CTGTGACCAGAGGTGGCCATGCTACATCCAAGTGCTAAACATCGCGCCCAGCCGAAAACACACGC
GCTTGCTTACCACGCTTGTTTACCACGATTGTCTACCTCAGTCCCAGTTACTACACCCGCCGCTT
TGGAGTTTTAGGTTGATTTCCCGGGTTTTCTCCAAAGCGGTTGGC
Found at i:11925 original size:8 final size:8
Alignment explanation
Indices: 11914--11965 Score: 68
Period size: 8 Copynumber: 6.5 Consensus size: 8
11904 GGAGAAGGGG
11914 AGAAGGAA
1 AGAAGGAA
11922 AGAAGGAA
1 AGAAGGAA
*
11930 AGAAGGGA
1 AGAAGGAA
* *
11938 TGAAGGGA
1 AGAAGGAA
*
11946 TGAAGGAA
1 AGAAGGAA
11954 AGAAGGAA
1 AGAAGGAA
11962 AGAA
1 AGAA
11966 AGGGTTATTG
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
8 40 1.00
ACGTcount: A:0.56, C:0.00, G:0.40, T:0.04
Consensus pattern (8 bp):
AGAAGGAA
Left flanking sequence: Indices 11414 -- 11913
GGTCGACGACAAGATCCACGCGCGGGCCCGTGGTCCGGTGCAGGTGCTTACCCGGCAGCCGGTGG
AGGGTCGGTCGCGTGACGGTGGGTTGCGGTTCGGTGAAATGGAGCGTGATTGTATGATTGCCCAC
GGTGCCGCCGGCTTCTTGAAGGAGCGGTTGATGGAGGCGTCCGACGCGTTCCGGGTGCACATCTG
CGGGTCGTGTGGGTTGATGTCGGTGATTGCCAACCTCAAGAAGAACCAGTTTGAGTGTCGGTCGT
GCAAGAACAAGACGAACATTTACCAGATCCACATTCCCTATGCCGCCAAGTTGTTGTTCCAGGAG
TTGATGGCGATGAACATCTCGCCGCGGTTGTACACCGAGCGCCTGGGGGTGTCGGTGAGAGTCTA
AACTGTATAATTAATAGAGACAAGGGCGACCTTGCAACGAATAGAAAAGGAAAAGGAAGAGGAGG
GAGGGGGAGAAGGAGGGAGAAGGGGAGAAGGGAAGGGAGAAGGGG
Right flanking sequence: Indices 11966 -- 12465
AGGGTTATTGCAAATTAATTCTAAAATAAGCGACTATTTAAACTCTGACAATGCCTTTCAAACCG
GTACAATTTCTCGTCTATTCAGGTGTTAGACTTAAGCCTTTGCACTGATGCGCATATCGCCAAAT
AGTTTGTCTACCACTTGCTTTTCATGAAAGTGCTAATGTGAACGAACAAGATACCAATGGCGGGT
GGCAACCGTCACAAAATTGTCTGAGCACATACAATGCCCTGCCACCGCTTTCAAACTGGAAAACG
GCCGGTTTGACGGTCCCCTCTGTGACCAGAGGTGGCCATGCTACATCCAAGTGCTAAACATCGCG
CCCAGCCGAAAACACACGCGCTTGCTTACCACGCTTGTTTACCACGATTGTCTACCTCAGTCCCA
GTTACTACACCCGCCGCTTTGGAGTTTTAGGTTGATTTCCCGGGTTTTCTCCAAAGCGGTTGGCG
TCCACACTGGTGTGTGGAGTGCATATAACCCTGGACTTTGAGGTT
Found at i:11942 original size:24 final size:23
Alignment explanation
Indices: 11906--11959 Score: 72
Period size: 24 Copynumber: 2.3 Consensus size: 23
11896 AAGGGAAGGG
11906 AGAAGGGGAGAAGGAAAGAAGGAA
1 AGAA-GGGAGAAGGAAAGAAGGAA
* *
11930 AGAAGGGATGAAGGGATGAAGGAA
1 AGAAGGGA-GAAGGAAAGAAGGAA
11954 AGAAGG
1 AGAAGG
11960 AAAGAAAGGG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
23 4 0.15
24 23 0.85
ACGTcount: A:0.50, C:0.00, G:0.46, T:0.04
Consensus pattern (23 bp):
AGAAGGGAGAAGGAAAGAAGGAA
Left flanking sequence: Indices 11406 -- 11905
CGGCACATGGTCGACGACAAGATCCACGCGCGGGCCCGTGGTCCGGTGCAGGTGCTTACCCGGCA
GCCGGTGGAGGGTCGGTCGCGTGACGGTGGGTTGCGGTTCGGTGAAATGGAGCGTGATTGTATGA
TTGCCCACGGTGCCGCCGGCTTCTTGAAGGAGCGGTTGATGGAGGCGTCCGACGCGTTCCGGGTG
CACATCTGCGGGTCGTGTGGGTTGATGTCGGTGATTGCCAACCTCAAGAAGAACCAGTTTGAGTG
TCGGTCGTGCAAGAACAAGACGAACATTTACCAGATCCACATTCCCTATGCCGCCAAGTTGTTGT
TCCAGGAGTTGATGGCGATGAACATCTCGCCGCGGTTGTACACCGAGCGCCTGGGGGTGTCGGTG
AGAGTCTAAACTGTATAATTAATAGAGACAAGGGCGACCTTGCAACGAATAGAAAAGGAAAAGGA
AGAGGAGGGAGGGGGAGAAGGAGGGAGAAGGGGAGAAGGGAAGGG
Right flanking sequence: Indices 11960 -- 12459
AAAGAAAGGGTTATTGCAAATTAATTCTAAAATAAGCGACTATTTAAACTCTGACAATGCCTTTC
AAACCGGTACAATTTCTCGTCTATTCAGGTGTTAGACTTAAGCCTTTGCACTGATGCGCATATCG
CCAAATAGTTTGTCTACCACTTGCTTTTCATGAAAGTGCTAATGTGAACGAACAAGATACCAATG
GCGGGTGGCAACCGTCACAAAATTGTCTGAGCACATACAATGCCCTGCCACCGCTTTCAAACTGG
AAAACGGCCGGTTTGACGGTCCCCTCTGTGACCAGAGGTGGCCATGCTACATCCAAGTGCTAAAC
ATCGCGCCCAGCCGAAAACACACGCGCTTGCTTACCACGCTTGTTTACCACGATTGTCTACCTCA
GTCCCAGTTACTACACCCGCCGCTTTGGAGTTTTAGGTTGATTTCCCGGGTTTTCTCCAAAGCGG
TTGGCGTCCACACTGGTGTGTGGAGTGCATATAACCCTGGACTTT
Found at i:11951 original size:32 final size:31
Alignment explanation
Indices: 11900--11965 Score: 107
Period size: 32 Copynumber: 2.1 Consensus size: 31
11890 GGGGAGAAGG
11900 GAAGGGAGAAGGGGAGAAGGAAAGAAGGAAA
1 GAAGGGAGAAGGGGAGAAGGAAAGAAGGAAA
11931 GAAGGGATGAA-GGGATGAAGGAAAGAAGGAAA
1 GAAGGGA-GAAGGGGA-GAAGGAAAGAAGGAAA
11963 GAA
1 GAA
11966 AGGGTTATTG
Statistics
Matches: 33, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
31 11 0.33
32 22 0.67
ACGTcount: A:0.52, C:0.00, G:0.45, T:0.03
Consensus pattern (31 bp):
GAAGGGAGAAGGGGAGAAGGAAAGAAGGAAA
Left flanking sequence: Indices 11400 -- 11899
CGGTTGCGGCACATGGTCGACGACAAGATCCACGCGCGGGCCCGTGGTCCGGTGCAGGTGCTTAC
CCGGCAGCCGGTGGAGGGTCGGTCGCGTGACGGTGGGTTGCGGTTCGGTGAAATGGAGCGTGATT
GTATGATTGCCCACGGTGCCGCCGGCTTCTTGAAGGAGCGGTTGATGGAGGCGTCCGACGCGTTC
CGGGTGCACATCTGCGGGTCGTGTGGGTTGATGTCGGTGATTGCCAACCTCAAGAAGAACCAGTT
TGAGTGTCGGTCGTGCAAGAACAAGACGAACATTTACCAGATCCACATTCCCTATGCCGCCAAGT
TGTTGTTCCAGGAGTTGATGGCGATGAACATCTCGCCGCGGTTGTACACCGAGCGCCTGGGGGTG
TCGGTGAGAGTCTAAACTGTATAATTAATAGAGACAAGGGCGACCTTGCAACGAATAGAAAAGGA
AAAGGAAGAGGAGGGAGGGGGAGAAGGAGGGAGAAGGGGAGAAGG
Right flanking sequence: Indices 11966 -- 12465
AGGGTTATTGCAAATTAATTCTAAAATAAGCGACTATTTAAACTCTGACAATGCCTTTCAAACCG
GTACAATTTCTCGTCTATTCAGGTGTTAGACTTAAGCCTTTGCACTGATGCGCATATCGCCAAAT
AGTTTGTCTACCACTTGCTTTTCATGAAAGTGCTAATGTGAACGAACAAGATACCAATGGCGGGT
GGCAACCGTCACAAAATTGTCTGAGCACATACAATGCCCTGCCACCGCTTTCAAACTGGAAAACG
GCCGGTTTGACGGTCCCCTCTGTGACCAGAGGTGGCCATGCTACATCCAAGTGCTAAACATCGCG
CCCAGCCGAAAACACACGCGCTTGCTTACCACGCTTGTTTACCACGATTGTCTACCTCAGTCCCA
GTTACTACACCCGCCGCTTTGGAGTTTTAGGTTGATTTCCCGGGTTTTCTCCAAAGCGGTTGGCG
TCCACACTGGTGTGTGGAGTGCATATAACCCTGGACTTTGAGGTT
Found at i:12768 original size:21 final size:21
Alignment explanation
Indices: 12742--12781 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
12732 CCGTTTGCCA
12742 CCCGTTTGTCTTCCCATTTCT
1 CCCGTTTGTCTTCCCATTTCT
12763 CCCGTTTGTCTTCCCATTT
1 CCCGTTTGTCTTCCCATTT
12782 ATCTCCCTGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.05, C:0.38, G:0.10, T:0.47
Consensus pattern (21 bp):
CCCGTTTGTCTTCCCATTTCT
Left flanking sequence: Indices 12242 -- 12741
CCTCTGTGACCAGAGGTGGCCATGCTACATCCAAGTGCTAAACATCGCGCCCAGCCGAAAACACA
CGCGCTTGCTTACCACGCTTGTTTACCACGATTGTCTACCTCAGTCCCAGTTACTACACCCGCCG
CTTTGGAGTTTTAGGTTGATTTCCCGGGTTTTCTCCAAAGCGGTTGGCGTCCACACTGGTGTGTG
GAGTGCATATAACCCTGGACTTTGAGGTTGGGCAACTCGTGGTCCAGCGGGCACTTTGAGTCGGT
AAACAACGCTAACCTCGCTCTCAGTGACCAGAGCCATCACCCTGACGCCGCTTCGACGCTTAAAA
AAATTTCGGGAAAGCAGGGCTCTGGTAAACTTCTGTTCGTATAAGAAACGTCACGTGATATGAGT
CACTTGATACTAACAAATCCAATCCCAGTCAGTGAACCAGGTACTCCCCGAAGCGTTACTAGCCA
CCCCTCCACGGCTGTCAAGCTTCCTCTTTTGCCTTCCGTTTGCCA
Right flanking sequence: Indices 12782 -- 13281
ATCTCCCTGTTACCTTCCCGTCCCAACCCATTCAATCAGTTCCCACCCCTACACCCCAAAACACT
TTCTTATATGTCGTTAACTATGTACAATCATGCTACTGCAAAAACTTCTCGCGCAACTCCTTGGC
CCGCTCCTCGTGCTGCTCCAACTGAGCAATCTTCTCCTTGACCTCGCCCGCCTCGTCGGCAAACG
CAATCAAGTTCTCCTTGTACGGGTGGTCGTCCCCGTCGTACACCTTCAACCGGTCCATACGCACA
AGCCGCAACTTGTTCTTGGGGATCATCCCCTTGACGGCCCGACGCAAAATCTCGCCGTGGCCCTT
GTTGGCGATCATCCGGTCCATGGGGATCAAATTAAGCGAGCCCGGACGCGTGGTGTGCGACCAGT
AGGTCTTTTCCGTCATTTTGTTGCCGCTGACCTTGAGATGGGCACAGTTGGTCACCACCACGTAG
TCGCCGTGGTCGCGGTTGGGGGAGAAGGTGGGCTTGTGCTTGCCG
Found at i:14855 original size:12 final size:12
Alignment explanation
Indices: 14821--14859 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
14811 GACAGGGCCG
14821 CTAGCACCACCA
1 CTAGCACCACCA
* *
14833 CCAGCAACACCA
1 CTAGCACCACCA
*
14845 CTAGCTCCACCA
1 CTAGCACCACCA
14857 CTA
1 CTA
14860 ATCTTAGTGT
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.33, C:0.49, G:0.08, T:0.10
Consensus pattern (12 bp):
CTAGCACCACCA
Left flanking sequence: Indices 14321 -- 14820
AGACTCATCACCAGAAGAAACAAAGTCAGAACTATCGCAAACCCCATTCCCCACTTAACCATGAA
TCTTACAACCAATAGCTAGACTTACCATCAATCCAACTGAACGCAGTCTTATAATACAAAACTCC
TATAAACCTATGCATGCAAATCGATTAGTCGTCGGTCAAGTCGATCACCTCGACCGAGGACTTCT
GGGCGGGCTCGTGGAGGCTCAACCGCGCCATGCCCGACGGCGAGGCAAACGCGGGCGACTCGGTG
GCCGACCGCGGCGACGGGAGGGTTTCGATGGTGTCGGGGCCCACCTCGATGCCGAGAATCAGCGT
GTACCGCTGGCGCTTGTTGGAGCCGACGTCGGTGGCCGACGGGCGCTTGGGGGACGCAGGGCGGA
CCGGAGCGGTGCCAGAGGTGGCCTGGGCCGTGGACTTGGGCCCGTTGGGCCGGGTGTTTTCTGTG
CTCGGGCCCGAGGCGGAGGCGTTGCTGGACCCAGTGACAGGGCCG
Right flanking sequence: Indices 14860 -- 15359
ATCTTAGTGTTAGTGCCAGCACCTCCACCGCCACCTGAAGCTGCCGCCGTCATCTGTGTACTGGG
TCGGTTCGCCGCCTTAGCCTGGGCTGGGTTAGAGGCCTGCCCTGGGTTCGTGGCCTGCCCAAGCT
GCGGCGAGCTGGCGTGCCCCATCGTCGGTGACTTGCTGTGTCCAGTCACCGGCGAGTTTCCCGCC
GAGTGGCCCGTGGACTTCTTCCGGCTGTTGAGGTACTTCAACATCTGAGTAACGTTGTCAAGCAT
GTCTCGCCAGTACAGCATCGAAAAGTCCGCGTTTCGGGGGAGATAGAAGTACGCCTTCTCGCGGT
TGGCCCGGTTGTAGCACTCGGTCAACTGGCGGGCGCGGTCCAGGTGGATCTTGGCCCGCTGGCCC
AACACCTCGGTGGTCTCGGGCCGGAGCTCGAGCGCCGCGGTGATCCACGCAAACCGCTTCTCGAG
GGCGTCGAGGTTGGCACTGGCGAGCTCGCTCTGGAGCCGCCGCAC
Found at i:14969 original size:18 final size:18
Alignment explanation
Indices: 14948--14984 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
14938 TTAGCCTGGG
14948 CTGGGTTAGAGGCCTGCC
1 CTGGGTTAGAGGCCTGCC
* *
14966 CTGGGTTCGTGGCCTGCC
1 CTGGGTTAGAGGCCTGCC
14984 C
1 C
14985 AAGCTGCGGC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.05, C:0.32, G:0.38, T:0.24
Consensus pattern (18 bp):
CTGGGTTAGAGGCCTGCC
Left flanking sequence: Indices 14448 -- 14947
TCCTATAAACCTATGCATGCAAATCGATTAGTCGTCGGTCAAGTCGATCACCTCGACCGAGGACT
TCTGGGCGGGCTCGTGGAGGCTCAACCGCGCCATGCCCGACGGCGAGGCAAACGCGGGCGACTCG
GTGGCCGACCGCGGCGACGGGAGGGTTTCGATGGTGTCGGGGCCCACCTCGATGCCGAGAATCAG
CGTGTACCGCTGGCGCTTGTTGGAGCCGACGTCGGTGGCCGACGGGCGCTTGGGGGACGCAGGGC
GGACCGGAGCGGTGCCAGAGGTGGCCTGGGCCGTGGACTTGGGCCCGTTGGGCCGGGTGTTTTCT
GTGCTCGGGCCCGAGGCGGAGGCGTTGCTGGACCCAGTGACAGGGCCGCTAGCACCACCACCAGC
AACACCACTAGCTCCACCACTAATCTTAGTGTTAGTGCCAGCACCTCCACCGCCACCTGAAGCTG
CCGCCGTCATCTGTGTACTGGGTCGGTTCGCCGCCTTAGCCTGGG
Right flanking sequence: Indices 14985 -- 15484
AAGCTGCGGCGAGCTGGCGTGCCCCATCGTCGGTGACTTGCTGTGTCCAGTCACCGGCGAGTTTC
CCGCCGAGTGGCCCGTGGACTTCTTCCGGCTGTTGAGGTACTTCAACATCTGAGTAACGTTGTCA
AGCATGTCTCGCCAGTACAGCATCGAAAAGTCCGCGTTTCGGGGGAGATAGAAGTACGCCTTCTC
GCGGTTGGCCCGGTTGTAGCACTCGGTCAACTGGCGGGCGCGGTCCAGGTGGATCTTGGCCCGCT
GGCCCAACACCTCGGTGGTCTCGGGCCGGAGCTCGAGCGCCGCGGTGATCCACGCAAACCGCTTC
TCGAGGGCGTCGAGGTTGGCACTGGCGAGCTCGCTCTGGAGCCGCCGCACGGCGTTGATGGCCTC
CTCGGCCGCGTGCTGGTGCTCCGGGGTGTCCTCGCGGAGCACCCGCTGGAGCCGCCGCTGGAACG
ACTCGAGCGCGTGGTGGTAGTCGCGTTGCTTCTCCTTGCTGGCGC
Found at i:15622 original size:15 final size:15
Alignment explanation
Indices: 15604--15660 Score: 89
Period size: 15 Copynumber: 3.8 Consensus size: 15
15594 TGACGGTTGG
15604 GCCTGTGCTGGCTGT
1 GCCTGTGCTGGCTGT
15619 GCCTGTGCTGGCTGT
1 GCCTGTGCTGGCTGT
15634 GCCTGTGCTGG-TGGT
1 GCCTGTGCTGGCT-GT
*
15649 GCCTGTGTTGGC
1 GCCTGTGCTGGC
15661 GGGGCCTGCG
Statistics
Matches: 39, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
14 1 0.03
15 38 0.97
ACGTcount: A:0.00, C:0.25, G:0.42, T:0.33
Consensus pattern (15 bp):
GCCTGTGCTGGCTGT
Left flanking sequence: Indices 15104 -- 15603
TAACGTTGTCAAGCATGTCTCGCCAGTACAGCATCGAAAAGTCCGCGTTTCGGGGGAGATAGAAG
TACGCCTTCTCGCGGTTGGCCCGGTTGTAGCACTCGGTCAACTGGCGGGCGCGGTCCAGGTGGAT
CTTGGCCCGCTGGCCCAACACCTCGGTGGTCTCGGGCCGGAGCTCGAGCGCCGCGGTGATCCACG
CAAACCGCTTCTCGAGGGCGTCGAGGTTGGCACTGGCGAGCTCGCTCTGGAGCCGCCGCACGGCG
TTGATGGCCTCCTCGGCCGCGTGCTGGTGCTCCGGGGTGTCCTCGCGGAGCACCCGCTGGAGCCG
CCGCTGGAACGACTCGAGCGCGTGGTGGTAGTCGCGTTGCTTCTCCTTGCTGGCGCGCTGCTGCT
CGGAGTAGGCGACCTTGAGCCGGTCGACCTCGGGGGTCGTTTTGGGCACTGTGCTGGCCAGGGTG
GCACCGGGTGGCCCTGGTGGAGCAGCTGACGGTTGTGACGGTTGG
Right flanking sequence: Indices 15661 -- 16160
GGGGCCTGCGCCTGTGCCACGGGCTGTTGGGAAACGCCCGCTTTTGATCCACTCGATGGGAAGGC
CGCGGCCGTGGGGGGTTTATTAGCCATCGAGGGGCTCGGCACGTTGGAGCTGGCGTTGGCCACCG
GGCTCGCCGACAGCGCGGCGCGGTGGTTGCTGGGTCTCCGGGCCAACGGGACGTCGTCGTCGGAC
TCGTCGCGCATCAGCACGTCCGCGTCGCCTGGCGGCGGTGCACGGCCGTTGGCCTGTCCGTTGGG
TGGTTGCGGAGCGGGCGGTGGTGCCACCACGGGGGACGTGGTGGGCAGCGCCTGCTCGCCCGCGT
GGGAGGTTCCCAGGGGTGCTGGTGGGCGAGGACGGCGGATGAACACGTCGGCGGGCTTGCGGGCC
ACGTGCCGGTGGTGCGGCGCCTGCGCCGGCTGTTTAGGCGGGTGTGACTGGATGGGCGGGTGTGA
CTGACTGGGTGAGGTAGTTTGAGGCTGGTGAGGCTGATTGGGCTG
Found at i:15667 original size:15 final size:15
Alignment explanation
Indices: 15604--15668 Score: 85
Period size: 15 Copynumber: 4.3 Consensus size: 15
15594 TGACGGTTGG
*
15604 GCCTGTGCTGGCTGT
1 GCCTGTGCTGGCGGT
*
15619 GCCTGTGCTGGCTGT
1 GCCTGTGCTGGCGGT
*
15634 GCCTGTGCTGGTGGT
1 GCCTGTGCTGGCGGT
* *
15649 GCCTGTGTTGGCGGG
1 GCCTGTGCTGGCGGT
15664 GCCTG
1 GCCTG
15669 CGCCTGTGCC
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 45 1.00
ACGTcount: A:0.00, C:0.25, G:0.45, T:0.31
Consensus pattern (15 bp):
GCCTGTGCTGGCGGT
Left flanking sequence: Indices 15104 -- 15603
TAACGTTGTCAAGCATGTCTCGCCAGTACAGCATCGAAAAGTCCGCGTTTCGGGGGAGATAGAAG
TACGCCTTCTCGCGGTTGGCCCGGTTGTAGCACTCGGTCAACTGGCGGGCGCGGTCCAGGTGGAT
CTTGGCCCGCTGGCCCAACACCTCGGTGGTCTCGGGCCGGAGCTCGAGCGCCGCGGTGATCCACG
CAAACCGCTTCTCGAGGGCGTCGAGGTTGGCACTGGCGAGCTCGCTCTGGAGCCGCCGCACGGCG
TTGATGGCCTCCTCGGCCGCGTGCTGGTGCTCCGGGGTGTCCTCGCGGAGCACCCGCTGGAGCCG
CCGCTGGAACGACTCGAGCGCGTGGTGGTAGTCGCGTTGCTTCTCCTTGCTGGCGCGCTGCTGCT
CGGAGTAGGCGACCTTGAGCCGGTCGACCTCGGGGGTCGTTTTGGGCACTGTGCTGGCCAGGGTG
GCACCGGGTGGCCCTGGTGGAGCAGCTGACGGTTGTGACGGTTGG
Right flanking sequence: Indices 15669 -- 16168
CGCCTGTGCCACGGGCTGTTGGGAAACGCCCGCTTTTGATCCACTCGATGGGAAGGCCGCGGCCG
TGGGGGGTTTATTAGCCATCGAGGGGCTCGGCACGTTGGAGCTGGCGTTGGCCACCGGGCTCGCC
GACAGCGCGGCGCGGTGGTTGCTGGGTCTCCGGGCCAACGGGACGTCGTCGTCGGACTCGTCGCG
CATCAGCACGTCCGCGTCGCCTGGCGGCGGTGCACGGCCGTTGGCCTGTCCGTTGGGTGGTTGCG
GAGCGGGCGGTGGTGCCACCACGGGGGACGTGGTGGGCAGCGCCTGCTCGCCCGCGTGGGAGGTT
CCCAGGGGTGCTGGTGGGCGAGGACGGCGGATGAACACGTCGGCGGGCTTGCGGGCCACGTGCCG
GTGGTGCGGCGCCTGCGCCGGCTGTTTAGGCGGGTGTGACTGGATGGGCGGGTGTGACTGACTGG
GTGAGGTAGTTTGAGGCTGGTGAGGCTGATTGGGCTGGTGAGAGT
Found at i:16240 original size:21 final size:21
Alignment explanation
Indices: 16214--16289 Score: 107
Period size: 21 Copynumber: 3.6 Consensus size: 21
16204 TTGACCTGAG
*
16214 GCTGGTTGCCTGGGTTAGCCT
1 GCTGGTTGCCTGGGTTAGCCA
* *
16235 GCTGGTTGCCTTGGTTAACCA
1 GCTGGTTGCCTGGGTTAGCCA
*
16256 GCTGGTTGCCTGAGTTAGCCA
1 GCTGGTTGCCTGGGTTAGCCA
*
16277 GGTGGTTGCCTGG
1 GCTGGTTGCCTGG
16290 AGCCTGCTGG
Statistics
Matches: 47, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 47 1.00
ACGTcount: A:0.09, C:0.22, G:0.37, T:0.32
Consensus pattern (21 bp):
GCTGGTTGCCTGGGTTAGCCA
Left flanking sequence: Indices 15714 -- 16213
CGATGGGAAGGCCGCGGCCGTGGGGGGTTTATTAGCCATCGAGGGGCTCGGCACGTTGGAGCTGG
CGTTGGCCACCGGGCTCGCCGACAGCGCGGCGCGGTGGTTGCTGGGTCTCCGGGCCAACGGGACG
TCGTCGTCGGACTCGTCGCGCATCAGCACGTCCGCGTCGCCTGGCGGCGGTGCACGGCCGTTGGC
CTGTCCGTTGGGTGGTTGCGGAGCGGGCGGTGGTGCCACCACGGGGGACGTGGTGGGCAGCGCCT
GCTCGCCCGCGTGGGAGGTTCCCAGGGGTGCTGGTGGGCGAGGACGGCGGATGAACACGTCGGCG
GGCTTGCGGGCCACGTGCCGGTGGTGCGGCGCCTGCGCCGGCTGTTTAGGCGGGTGTGACTGGAT
GGGCGGGTGTGACTGACTGGGTGAGGTAGTTTGAGGCTGGTGAGGCTGATTGGGCTGGTGAGAGT
GGTGAAGCTGATTAGGCTGGTTCACGTGATGAGGGTTGACCTGAG
Right flanking sequence: Indices 16290 -- 16789
AGCCTGCTGGCTAACCTGGTTGGGCGACAGCTGCCCAGACTGACCAGACTGACTCTTGACTTGTT
GAGTAGACCCAGGCACTGGCGGTGATCCCCGGTTGTGGAAGATCGAAGGCAACGTGTGCGAATGG
GGAGCCATCGGCGACTGGGTGTCTGGCCGGTGCATCCCGTTCATTCCAGCGAGTGGCGGGTTGGT
GGCGCCTGGCGTCAACAAGTACGGCGAGCCTGGGACTGGCGGCAGACGCATCATCCCGTCGGGAA
GCGGAGCAAGGGGAAACTGTGGGTTGGGAAGCCCCTGGGGGAATCCTGTGCTGATGTGAGGCAAG
TGGGGCCGTGGGTGGTGTGTCGAGGCGTGTGACAGCGGGGCCTGGGCCCGGTGAGTCTGAGTGAG
AGGCTGGGGAGGGTTGGCCACTTGGGTGGGATGAGTGTGGAGGGGAGGCAGATGGGCCGGCAGCT
GCGCAAACGGCTGGGTGGCCACAGGGTTCAATGGGTTGGTCAGCG
Found at i:16886 original size:21 final size:21
Alignment explanation
Indices: 16857--16940 Score: 78
Period size: 21 Copynumber: 4.0 Consensus size: 21
16847 GGTTAGAGCC
* *
16857 TCGATTCTCGTTTGCCAGGTT
1 TCGAATCTCGTTCGCCAGGTT
* *
16878 TCGAATCTCGCTCACCAGGTT
1 TCGAATCTCGTTCGCCAGGTT
* * *
16899 TCGCATCTCGTTCGTCAAGTT
1 TCGAATCTCGTTCGCCAGGTT
* * *
16920 TCGATTCTCGCTCGCCCGGTT
1 TCGAATCTCGTTCGCCAGGTT
16941 ATTCTCGTTA
Statistics
Matches: 48, Mismatches: 15, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
21 48 1.00
ACGTcount: A:0.12, C:0.31, G:0.21, T:0.36
Consensus pattern (21 bp):
TCGAATCTCGTTCGCCAGGTT
Left flanking sequence: Indices 16357 -- 16856
GTAGACCCAGGCACTGGCGGTGATCCCCGGTTGTGGAAGATCGAAGGCAACGTGTGCGAATGGGG
AGCCATCGGCGACTGGGTGTCTGGCCGGTGCATCCCGTTCATTCCAGCGAGTGGCGGGTTGGTGG
CGCCTGGCGTCAACAAGTACGGCGAGCCTGGGACTGGCGGCAGACGCATCATCCCGTCGGGAAGC
GGAGCAAGGGGAAACTGTGGGTTGGGAAGCCCCTGGGGGAATCCTGTGCTGATGTGAGGCAAGTG
GGGCCGTGGGTGGTGTGTCGAGGCGTGTGACAGCGGGGCCTGGGCCCGGTGAGTCTGAGTGAGAG
GCTGGGGAGGGTTGGCCACTTGGGTGGGATGAGTGTGGAGGGGAGGCAGATGGGCCGGCAGCTGC
GCAAACGGCTGGGTGGCCACAGGGTTCAATGGGTTGGTCAGCGGGCTCGCCAGAGAGTTCAGCGG
GTTCGCCGGGTTCGAGCGTTGGTGCTCGATTGCCAGGTTAGAGCC
Right flanking sequence: Indices 16941 -- 17440
ATTCTCGTTATTCACGTTCGCCAGGTTATTCTCGCTCGCCGCCTGCGGGAACTGGATCACCCCGC
CCTCCATGGGCTCGTCGTCGTCGCTGTCAAGACACACCACCTCCGTGACCTTGGGCGGCGGTCGC
TTCGGCGCCGTTTCCCCGTCGGAGCCCAGGTCGTCGTCCGAGTCGTCCACCGCGTCCGCCACCCA
CGTCCCGTCCGCGTTCACCGTCACCAGCTCGGTTCGGTCGTCCACCACCTTCATGATGTCGACAA
AGTACTCCAGGAGCGCCAACAGCTCGAGCGTCACCTGGCGGTTGCAGTGGGGACACTTCCACGAC
GGCAACTGGAGCTGCAGCTGGAGATAAACCTCGGCGTCAAAGCACTGCGGGTGCGAGCACTGGGT
CAGCTTGACGGGGTACTTCATCCGCACAAACAGCAACGGGTCCCGGAGCAGCACCAGCAGCGTGC
CCACCTCGATGTCGTCGTCGCCGTTGGCCCGGATGGCGTCGATGG
Found at i:16953 original size:27 final size:27
Alignment explanation
Indices: 16923--16974 Score: 77
Period size: 27 Copynumber: 1.9 Consensus size: 27
16913 TCAAGTTTCG
* *
16923 ATTCTCGCTCGCCCGGTTATTCTCGTT
1 ATTCACGCTCGCCAGGTTATTCTCGTT
*
16950 ATTCACGTTCGCCAGGTTATTCTCG
1 ATTCACGCTCGCCAGGTTATTCTCG
16975 CTCGCCGCCT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.12, C:0.31, G:0.19, T:0.38
Consensus pattern (27 bp):
ATTCACGCTCGCCAGGTTATTCTCGTT
Left flanking sequence: Indices 16423 -- 16922
GCCATCGGCGACTGGGTGTCTGGCCGGTGCATCCCGTTCATTCCAGCGAGTGGCGGGTTGGTGGC
GCCTGGCGTCAACAAGTACGGCGAGCCTGGGACTGGCGGCAGACGCATCATCCCGTCGGGAAGCG
GAGCAAGGGGAAACTGTGGGTTGGGAAGCCCCTGGGGGAATCCTGTGCTGATGTGAGGCAAGTGG
GGCCGTGGGTGGTGTGTCGAGGCGTGTGACAGCGGGGCCTGGGCCCGGTGAGTCTGAGTGAGAGG
CTGGGGAGGGTTGGCCACTTGGGTGGGATGAGTGTGGAGGGGAGGCAGATGGGCCGGCAGCTGCG
CAAACGGCTGGGTGGCCACAGGGTTCAATGGGTTGGTCAGCGGGCTCGCCAGAGAGTTCAGCGGG
TTCGCCGGGTTCGAGCGTTGGTGCTCGATTGCCAGGTTAGAGCCTCGATTCTCGTTTGCCAGGTT
TCGAATCTCGCTCACCAGGTTTCGCATCTCGTTCGTCAAGTTTCG
Right flanking sequence: Indices 16975 -- 17474
CTCGCCGCCTGCGGGAACTGGATCACCCCGCCCTCCATGGGCTCGTCGTCGTCGCTGTCAAGACA
CACCACCTCCGTGACCTTGGGCGGCGGTCGCTTCGGCGCCGTTTCCCCGTCGGAGCCCAGGTCGT
CGTCCGAGTCGTCCACCGCGTCCGCCACCCACGTCCCGTCCGCGTTCACCGTCACCAGCTCGGTT
CGGTCGTCCACCACCTTCATGATGTCGACAAAGTACTCCAGGAGCGCCAACAGCTCGAGCGTCAC
CTGGCGGTTGCAGTGGGGACACTTCCACGACGGCAACTGGAGCTGCAGCTGGAGATAAACCTCGG
CGTCAAAGCACTGCGGGTGCGAGCACTGGGTCAGCTTGACGGGGTACTTCATCCGCACAAACAGC
AACGGGTCCCGGAGCAGCACCAGCAGCGTGCCCACCTCGATGTCGTCGTCGCCGTTGGCCCGGAT
GGCGTCGATGGTGGCCTGGCGCGAGATCGCCGGGTGGGCAACAAT
Found at i:18992 original size:24 final size:24
Alignment explanation
Indices: 18965--19010 Score: 76
Period size: 24 Copynumber: 1.9 Consensus size: 24
18955 TCGGTGTTTG
18965 TTTGTACAGTAGT-TTAATCAGTGA
1 TTTGTACAGTAGTATT-ATCAGTGA
18989 TTTGTACAGTAGTATTATCAGT
1 TTTGTACAGTAGTATTATCAGT
19011 CGTATATACG
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
24 19 0.90
25 2 0.10
ACGTcount: A:0.28, C:0.09, G:0.20, T:0.43
Consensus pattern (24 bp):
TTTGTACAGTAGTATTATCAGTGA
Left flanking sequence: Indices 18465 -- 18964
GCGGTTGTGGCGTCTGTTTGTGTTTCTGGCGGCGGGGGGCCCGTTTGCTTCGGGCCTCGGACGCG
CGGGGTGGGGTGTTTGGTCAGCTGATCGGAGGGGTGGGGCAGCACGGGTGGTGGAAACGGAAGGA
AAACGGTGGTTGTAGGTTGCTGAAAGTGTTGGGGCTTTGAAAACTGAGAAAAAAGTGGGATTAGG
GGTAATCTTCAGCACGTAGTTGGCACCCACAACTACTCAAAGCAATTTTCACCCCTTGCAGATTC
GGGCAGTATGGTGGAGTGGTTAACACGTAGGGTGCAGGTCCCTATGCCCTTTGGGCGCGCAGGTT
CGAACCCTGCTGCTGTCGATCTTTTTTGCCGCCGGAACGAACATCGATGGTTGCTGGAGGTAGTG
ACCGTGCTATTTGCCAAAAGCAAATCTGAACGGGCGATTTAGACCTCTGGTGGTACTCTTTTTGC
TGCCATCGCAGAGTACACGAAATGAGTTAACCCAATCGGTGTTTG
Right flanking sequence: Indices 19011 -- 19510
CGTATATACGTGCCTTTCTAGAGTCGGCTGGTGCTCTGGCTGCAACTAATGGCACCTCCAGTTTG
GTATGACCAGGTTCTGGCTGAAATGTGCTCTGTTAGCCGTTCTGTCTCTGTGCTGACTGGCTGGC
CCTTACCAAACCTGTGCCCTAAGTAAACGTAGCCACCCCAAGCAACGCGGCCGCGTTCCGCGCGT
TCAACTTGGTCTCGGGAGCCCGCTTGGGCGGTTCGTCCGTCTGCAACAGCCGGAACGTCCGTGAC
AGCCACGCGTCGCCCTCCGCATCCTGCGACTGCGGCAAGTTGTGCTTCAACAGCGACAAGTTGTC
CCGGTTCAACCGCGAGAGCCCGCCCTTGGCGTCCACCAACCGCACGTCCAACCGAATGGCCTCCA
AGTGCTTCAAGAGCTGGCGGTGGTGCGCCACCTTCCGCAAGGTGTACGCCTTGAGCAACTGCTTC
ACCTTGTGGTCGGCAAAGTCAATCACCTCCTGCCGCTCGCACAAC
Found at i:20860 original size:11 final size:11
Alignment explanation
Indices: 20824--20863 Score: 53
Period size: 11 Copynumber: 3.6 Consensus size: 11
20814 GGTGGTGGTT
20824 AGGTGGTGAGC
1 AGGTGGTGAGC
* *
20835 ACGTGGTGGGC
1 AGGTGGTGAGC
*
20846 AGGTGGTGAGT
1 AGGTGGTGAGC
20857 AGGTGGT
1 AGGTGGT
20864 TTTCCAACCG
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
11 24 1.00
ACGTcount: A:0.15, C:0.07, G:0.55, T:0.23
Consensus pattern (11 bp):
AGGTGGTGAGC
Left flanking sequence: Indices 20324 -- 20823
GAGTAGGTGCGTCTCACGTCCTTGTACACCTTCAGACGGAACTTGGGGAGGCCCTGGACAGCCAC
GCTGAACTTGACGATGGGGTTGCCGGGCTTGTTGCGCTCGACGGCGGTGATTTTGAACTTGAGCA
GGTACTTGGCAAACCGCTCGGGTACGAGTTTGCGGAGCATTGGCTCGGCCACGAGGTCTGGGGCT
CCCGTGGGTGCCTGGGGCTCGGCCTGGGGTGCTGGCTGGTCCACCACGGGCTCGGACGCCGGCTG
CTCGGGCTGTGGGGCCATTGACGGTGCAGCGAGCGGCTGTGTGTCCTCGGGCTCTGCAAACGGGT
TGTTGTTTTCGAATTCGTCGTCGTATGGTAGGGCCATGGTGACGGTTGGGGTGGGGGTTCGTGGC
TTGAATTATGCGATTGCCTGCATGGGGTGGCAACAGTGAGGTGAGAGGACGGAATGAGAAGAGAG
GTGGGTAGGGACACGGGGTGGAAGTAGATCGGTGTGGTGGTGGTT
Right flanking sequence: Indices 20864 -- 21363
TTTCCAACCGGAGCGAGGCTGTGGTTCGTGGTCATCTGGTACCACGGTGAGTAGTAGATGTAACC
GAAGGCTGGATACCCAGGTGGAGCAGTGATCTAAGGGACCCACTGCTATACCCTTACGTCCCTTC
CCTTCCTTCCCCTATCCACACTAGCCCCACCCACACTCGAACTCGGTACCTACTGACCCACTCTC
CAATCCCCACACACATCCACTTTTTGCACAAATTCAGCACAATCTGCCAAAACCTACCATTAAAG
TATTCGTCTATTACTATGCTTCACTCTCGTCCGAGTCCAACACAATCAACCCGGCCTGCGACGTC
TGCGAGTCAGAGTCCACGCTATCGTCCGGGGTGTCCATCTCGGCGATCTCGACGTTGTCCCGCAC
AAAGAACTCGTCGATCGACGTGGGCACCTTGACCTCGAGCTTCTCGTCAAACGCCAGCTCAAGCG
TGTAGTACAACATCACCAGCGTCCGCGGCGACCCCGTCTGCTCGT
Found at i:20862 original size:22 final size:22
Alignment explanation
Indices: 20814--20863 Score: 64
Period size: 22 Copynumber: 2.3 Consensus size: 22
20804 AGATCGGTGT
**
20814 GGTGGTGGTTAGGTGGTGAGCA
1 GGTGGTGGGCAGGTGGTGAGCA
* *
20836 CGTGGTGGGCAGGTGGTGAGTA
1 GGTGGTGGGCAGGTGGTGAGCA
20858 GGTGGT
1 GGTGGT
20864 TTTCCAACCG
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.12, C:0.06, G:0.56, T:0.26
Consensus pattern (22 bp):
GGTGGTGGGCAGGTGGTGAGCA
Left flanking sequence: Indices 20314 -- 20813
GACCACCTCCGAGTAGGTGCGTCTCACGTCCTTGTACACCTTCAGACGGAACTTGGGGAGGCCCT
GGACAGCCACGCTGAACTTGACGATGGGGTTGCCGGGCTTGTTGCGCTCGACGGCGGTGATTTTG
AACTTGAGCAGGTACTTGGCAAACCGCTCGGGTACGAGTTTGCGGAGCATTGGCTCGGCCACGAG
GTCTGGGGCTCCCGTGGGTGCCTGGGGCTCGGCCTGGGGTGCTGGCTGGTCCACCACGGGCTCGG
ACGCCGGCTGCTCGGGCTGTGGGGCCATTGACGGTGCAGCGAGCGGCTGTGTGTCCTCGGGCTCT
GCAAACGGGTTGTTGTTTTCGAATTCGTCGTCGTATGGTAGGGCCATGGTGACGGTTGGGGTGGG
GGTTCGTGGCTTGAATTATGCGATTGCCTGCATGGGGTGGCAACAGTGAGGTGAGAGGACGGAAT
GAGAAGAGAGGTGGGTAGGGACACGGGGTGGAAGTAGATCGGTGT
Right flanking sequence: Indices 20864 -- 21363
TTTCCAACCGGAGCGAGGCTGTGGTTCGTGGTCATCTGGTACCACGGTGAGTAGTAGATGTAACC
GAAGGCTGGATACCCAGGTGGAGCAGTGATCTAAGGGACCCACTGCTATACCCTTACGTCCCTTC
CCTTCCTTCCCCTATCCACACTAGCCCCACCCACACTCGAACTCGGTACCTACTGACCCACTCTC
CAATCCCCACACACATCCACTTTTTGCACAAATTCAGCACAATCTGCCAAAACCTACCATTAAAG
TATTCGTCTATTACTATGCTTCACTCTCGTCCGAGTCCAACACAATCAACCCGGCCTGCGACGTC
TGCGAGTCAGAGTCCACGCTATCGTCCGGGGTGTCCATCTCGGCGATCTCGACGTTGTCCCGCAC
AAAGAACTCGTCGATCGACGTGGGCACCTTGACCTCGAGCTTCTCGTCAAACGCCAGCTCAAGCG
TGTAGTACAACATCACCAGCGTCCGCGGCGACCCCGTCTGCTCGT
Found at i:39244 original size:14 final size:15
Alignment explanation
Indices: 39227--39256 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
39217 GTGGTGGAGA
39227 GGTGGTTA-CGAGGG
1 GGTGGTTACCGAGGG
39241 GGTGGTTACCGAGGG
1 GGTGGTTACCGAGGG
39256 G
1 G
39257 TGGGGGTGCT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 8 0.53
15 7 0.47
ACGTcount: A:0.13, C:0.10, G:0.57, T:0.20
Consensus pattern (15 bp):
GGTGGTTACCGAGGG
Left flanking sequence: Indices 38727 -- 39226
GGTGGGAGCAGGCCGGGTTCTCGTGCAAACGGGGTGAGTTGCAAGTGTGGTTTTTTTTGATGCTG
GGTGTGTATGAGTGTCGTGCTTCGCCGATGCCTAATCAAAACAACGCGAACGCGCTTGTTTTTTA
CCAGACGAGTTGCGACGCGGGCGGGACTACAGCAGAGCGAAAAAAGAGCTGGCACCCGGGAAAGG
CGCGGTATTTATGTTGGCCGTGGCGAAAAAAGCTCTGGGAAATGAATGACCTCGACGGGAGGGTT
TTGGGAGGAGGGTGGTGGTTTTGTCTGGTTATAAGCCCGGATAGGTTACAATATGCGCAATCGCC
AAAGGTACGGTGGTGGCGCTCGTGACTGGGTGAAATTGGCGATCCATTGTTGCAGGCGATATATC
GGGAGCGACGTAGCCCGGGGCTGTCGCTGGCGCCCCCCGACGCGTGGGGATGCACGTAGGCGGCT
GGCTGTAGGTAATTACGCGTGGTGTGGGTGGGGTGGTGGTGGAGA
Right flanking sequence: Indices 39257 -- 39756
TGGGGGTGCTGGGTCAGGTGGGGGTGTCAATACGAGAGCAATGATAATATGCCTGGTGCGGGGTT
GTCGGGGCTACCTTTGTTTTGATTGCGGACGGGTGAAATTTGATCGCCGTTAGGTTACATGCATG
TAAATCGCGTGGCTGCAGGGTGGACGACGAGACGTGGAGCCACTCCTTACATAATTGACAGACGT
GTCGGTTTTGGCATCACGGTTGTAGAGAGGAAGTGGTGATGAGGTGGCTTTGGCACGGTCACACT
ACCGTTCGGGGGGGCGTTGGAGAGCGCAATTGGTACAAAACTCTAAATGGCAATTTCGTGCTTTG
GCTGCAAAATTTTGTGAAAAGGTGGAAAGAGTGGGGAGTGTGAGGAAAATGCAGTTTGGGGATGA
ATAGGGTGAAAGGTAAGCGGAGGGGCCGTAGCAAACTGAACAGGGACAATTCGGGGTAGAAATCA
GTAGGAGTCGTGAGCGATCGGGGTACTGTACAGAGAACCTTCGCT
Found at i:42293 original size:13 final size:13
Alignment explanation
Indices: 42275--42305 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
42265 ATTTGCATGT
*
42275 TTCGAGCTATCAG
1 TTCGAGCGATCAG
42288 TTCGAGCGATCAG
1 TTCGAGCGATCAG
42301 TTCGA
1 TTCGA
42306 TTCCATGTCA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.23, C:0.23, G:0.26, T:0.29
Consensus pattern (13 bp):
TTCGAGCGATCAG
Left flanking sequence: Indices 41775 -- 42274
CTCTCAACAGTTTTAGTCATTAGCATAATTTGATTCGGTCTGAGTAAACTCACAGGGCGAACTCT
TTGATAATGGATACATGACTTTTCTCATCGAGGTCCGAAGTTGGCCGTGGGCACTATTATCGGGC
TCTCAGAGCACCGGGAGTAGCCATTAGGCCCCAATACAATTATACTGATTGATGTTAGTCAGCCT
GGCTAGCAGCCCCTTCCAGCAGCTCCCAACCTTGGCCGAGCCACCTAAAACATAGACACCATCCT
CACTGGGAGTTGCAAAATCCGTGAAAACCATCAATACCCATGGGCTGTGAAGTTTGGTCTTCGAC
CGCATTCGGTATGTGCGTAAAATGTACGGATATACGAGAACGTCAAGACGCTGAGAGGGATAAAC
ACACGTTCTGGCAAATACGTCACGACTATCTGGGTGGGATGAGCGCACGTGTTGGCGAGTACGTC
GTGTATTATGTATTCTTTACTTCTTTAGGACAACGATTTGCATGT
Right flanking sequence: Indices 42306 -- 42805
TTCCATGTCAGGCTGTGAGTTCTCACCAGTTCTATCACCACTAAACAGGGGAAAACACTCGCTTG
CCATCGAGAGTCTAATAAACAAGGCACTGGAGACTGTACGACACAAGTGACAAAATGATCCGAAT
AACGCTGGAAACTTCTCTACGTCCCTCGCATCTAGTCCACCCCTCCACGTTCTTATCCTTTTCTT
TCATAATTACTACATACGACCGGGCACCCTGTTTGTCTATCCGCGGCCCGGTGTCCGGCCGTCCA
TTAGTCCCTAGTGTCTGGCACTTTTGGGTTTTTCGGTGATGAAGCCGCCGTTGACGTTGTTGACC
TCAAAGTCGTTGTCCTTTAATCGCCGCTCCAACTTCTCCCGCTGCAACTCGCGCCATCTCGTCAA
CTTCAGGTACTCGTGCAACTTGAACCCAAACACTTTGGGGACATACATTTGTTTCAGGTGGATGG
GGATGGCCTGGGGGAAGTTTTGGAAGAACATGGCCGGGAACGACG
Found at i:43507 original size:18 final size:18
Alignment explanation
Indices: 43484--43519 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
43474 GTGGTGTGCG
* *
43484 GTGGGTGTTGAGTGGGGT
1 GTGGGTGGTGAATGGGGT
43502 GTGGGTGGTGAATGGGGT
1 GTGGGTGGTGAATGGGGT
43520 AACCAGCAAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.08, C:0.00, G:0.61, T:0.31
Consensus pattern (18 bp):
GTGGGTGGTGAATGGGGT
Left flanking sequence: Indices 42984 -- 43483
ATACTTTTCAAACATTTTGTTAAGGCCCCGCAGCGTCAAGATGTACCGGGCGTGGATGAGCCCGT
AGAGCATGCGGGCGTTCTGCTCCAACTGCTCGCGGATTTCTTGCGGGTGCAGCTCGATGTCGACA
ATGTCGGTGATGATGTCGATCAACGCTGGTAGCCGCAGCACCTCCTGGTTCAACCCGGTCAAGTT
GAAGCGGTCGCGGATGTACTCGTCATCGATGTCGCAGAAGTACTCGTTGCCCTTGATGCCCAAGA
ACAAGTCGATCCAGTACTCAGTGAATTCCGACAGGGTGTCGGCCACGTATTCGTCTCCCATGTTG
TGGGAAGGTTGGGGTCGGAGGGTGTGTCGCGAAGATGAGGATCGAAGTTTTTCGTGAGAGGGTGA
AAAGTGGGAAGACCACGGTGGTGTGGCGGGAGTGGGGAGAGCGGTGGTGGGGCTAGAAGGGGTAG
TAGAGGTAGTACGGGTAGTAGTTGGGGTTGTGTTAGTGGTGTGCG
Right flanking sequence: Indices 43520 -- 44019
AACCAGCAATAGTGAGAAAAGAGTGTAAGCGAGTGGTGGTAAGGGAAGGTGAAGAAAAAAGAGAG
CGGTGGGTGAGTGATGGGGAGAGCGATGGGAGAGAATGGTTGGCTGCGAAGGGAAACACACTCAT
GTCATCATAAGAGCTTTAAGTAGGATTTTAACTAAGCAATGGTACCCGGTTGTGGAACTCCGAGG
GCCACAACGGAACACCGAACACGAAAAAGTTTATTGGCCCGAAGTGAAAGCTAGTGGTATATTGT
CTACAATCACCAGCGGGGTTATAATCCACTCGTCTATAGCTGATGACCCGAGGCAACTAAAGACT
GTGATAGCTTACTGACCCTGGTCGTAAAGGGTTCAATTGGGTCACTTCACTACTACTTGATATTC
TGCTACCAGGCTTCATTACTTCTTTCTTTTCTCTACGATTGTAACCGTCACTTCCGCAGTATTCA
CGGTCAACCACCAGCCACAGCCACCAAAAGAACGTTCGAGTACCC
Found at i:44210 original size:13 final size:13
Alignment explanation
Indices: 44192--44226 Score: 52
Period size: 13 Copynumber: 2.7 Consensus size: 13
44182 ACACCCCAAC
* *
44192 AACCACCTACGCA
1 AACCACCAACACA
44205 AACCACCAACACA
1 AACCACCAACACA
44218 AACCACCAA
1 AACCACCAA
44227 ACCGTAATCA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.49, C:0.46, G:0.03, T:0.03
Consensus pattern (13 bp):
AACCACCAACACA
Left flanking sequence: Indices 43692 -- 44191
TACCCGGTTGTGGAACTCCGAGGGCCACAACGGAACACCGAACACGAAAAAGTTTATTGGCCCGA
AGTGAAAGCTAGTGGTATATTGTCTACAATCACCAGCGGGGTTATAATCCACTCGTCTATAGCTG
ATGACCCGAGGCAACTAAAGACTGTGATAGCTTACTGACCCTGGTCGTAAAGGGTTCAATTGGGT
CACTTCACTACTACTTGATATTCTGCTACCAGGCTTCATTACTTCTTTCTTTTCTCTACGATTGT
AACCGTCACTTCCGCAGTATTCACGGTCAACCACCAGCCACAGCCACCAAAAGAACGTTCGAGTA
CCCAAACAAAGACAACTCAGGCCACAAAATTCACCAGTGACTCCAATTGACCAGCCCAATCGGCA
ATCTTTACCGGCAACCACACTCAACCCCACCATACCTCACCGTTCCCTACTTTTCACCCACCTCA
CCACTGTAAAACCATCGCGCACGGTTACCACCACCACACCCCAAC
Right flanking sequence: Indices 44227 -- 44726
ACCGTAATCAAAACTACCCAGTAACCCCCCTACTGACCCAATTGCCTACCTAGCCCACTCCCACA
CCCCCAGTCTCTCTCTCCCACACCCACCCACCACCTCATACTTCGCGGCTTTTTCACGCGTATCC
TCTCCACCATGCAGTTGACACTCGTTGACACGGAGCCCGGGGTGCAAACCGTGGACGCCAACAGC
AGCTATGTTGTTGCGGGTGGCCACCAGCTCCAGCTCATCCCCACGTCACTGCTTTCTCCCGAAAC
CACCACCACCAAGGGCACGGCCACCGTGGTCCCCCACCCTAGGGAAATCGTCATCGCCCGGTTGC
GTCCCACCAACAACCAGGTGGTATATGCCGACTCTGCTGGGGAGATCTGGTTCTACGACATCGAC
GACACCTCTGTCCCGCTTCCCCAGCCGCGCAAATTGTACCCGTTGGTGGACCGGCCCGCGACCCT
CGTGGTGGCTCTCGACTGGGAGCCGTGTGGGCACATATTTGCATT
Done.