Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: C7445

Parameters: 2 7 7 80 10 50 500

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 361

Length: 603
ACGTcount: A:0.41, C:0.13, G:0.07, T:0.40


Found at i:543 original size:24 final size:24

Alignment explanation


    Indices: 506--582  Score: 74
    Period size: 24  Copynumber: 3.4  Consensus size: 24

        496 TAATATTTAT

                              *    *
        506 ATAATA-ATAT-TATTATTATTAT
          1 ATAATATATATATATTATCATTAA

                 * *                
        528 ATAATTTTTATATATTATCATTAA
          1 ATAATATATATATATTATCATTAA

                                     
        552 ATAATATATATATA-TAT-ATATAA
          1 ATAATATATATATATTATCAT-TAA

                     
        575 AT-ATATAT
          1 ATAATATAT

        583 TTAAATATTC


Statistics
Matches: 46,  Mismatches: 6, Indels: 6
        0.79            0.10        0.10

Matches are distributed among these distances:
  22   13  0.28
  23   11  0.24
  24   22  0.48

ACGTcount: A:0.48, C:0.01, G:0.00, T:0.51


Consensus pattern (24 bp):   
ATAATATATATATATTATCATTAA

Left flanking sequence: Indices 6 -- 505
CAACATTGTTATATTGTGACATTATTTAGTTACAGCAATAGCCCCTATAACCGATAATATTAAAA
TTATACCTGTAATTATTAATAATATTGCATATTCTGTATATAATTGTGTTCCAACTATAACTAAT
TCATTTCATACTGTCTCTTTTTCCATAACAATACCAAATGTATCATAAGTTAAATCTAAAGGAAT
TAAACATATTATTAATATTGTTATTATTAATGGTGATATATTTCCTTCTGGTGTATAATCAATTT
TTAATAATGATAAAATAAATAAGAATAAAATAGCAATAGCTCCTACATAAATTAATACATATAAA
ATTCCCATTAATACATATCCCTGACTATATAAACATATAGCTGTACTTACGAATAATACAATTAA
ACATAAAATACTTTGTACAGGTGATAAAATACTAATAGCTAATAAACTACTAATACCACTAATTA
AATTCATCCCTTTTGGGATATATTTATCTTATTTTTAATATTTAT


Right flanking sequence: Indices 583 -- 603
TTAAATATTCTATAATATTTC



Found at i:587 original size:12 final size:12

Alignment explanation


    Indices: 549--590  Score: 59
    Period size: 12  Copynumber: 3.6  Consensus size: 12

        539 ATATTATCAT

                        
        549 TAAATA-ATATA
          1 TAAATATATATA

              *         
        560 TATATATATATA
          1 TAAATATATATA

                       *
        572 TAAATATATATT
          1 TAAATATATATA

                   
        584 TAAATAT
          1 TAAATAT

        591 TCTATAATAT


Statistics
Matches: 27,  Mismatches: 3, Indels: 1
        0.87            0.10        0.03

Matches are distributed among these distances:
  11    5  0.19
  12   22  0.81

ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45


Consensus pattern (12 bp):   
TAAATATATATA

Left flanking sequence: Indices 49 -- 548
CCTATAACCGATAATATTAAAATTATACCTGTAATTATTAATAATATTGCATATTCTGTATATAA
TTGTGTTCCAACTATAACTAATTCATTTCATACTGTCTCTTTTTCCATAACAATACCAAATGTAT
CATAAGTTAAATCTAAAGGAATTAAACATATTATTAATATTGTTATTATTAATGGTGATATATTT
CCTTCTGGTGTATAATCAATTTTTAATAATGATAAAATAAATAAGAATAAAATAGCAATAGCTCC
TACATAAATTAATACATATAAAATTCCCATTAATACATATCCCTGACTATATAAACATATAGCTG
TACTTACGAATAATACAATTAAACATAAAATACTTTGTACAGGTGATAAAATACTAATAGCTAAT
AAACTACTAATACCACTAATTAAATTCATCCCTTTTGGGATATATTTATCTTATTTTTAATATTT
ATATAATAATATTATTATTATTATATAATTTTTATATATTATCAT


Right flanking sequence: Indices 591 -- 603
TCTATAATATTTC


Done.