sallet_2.scaffold.fasta.s86.2.7.7.80.10.50.500.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold95
Parameters: 2 7 7 80 10 50 500
Length:  274956

Tables:   1   

This is table  1  of  1  ( 61 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1383--1427	18	2.5	18	92	0	72	35	4	48	11	1.59
4497--4528	14	2.3	14	100	0	64	21	65	12	0	1.25
7289--7325	12	2.9	12	92	8	56	27	32	13	27	1.94
13938--13974	11	2.9	14	76	23	53	32	0	59	8	1.27
14119--14158	21	1.9	21	94	0	71	12	25	35	27	1.92
15007--15041	13	2.7	13	90	0	61	25	8	57	8	1.57
15436--15479	18	2.4	18	96	0	79	36	34	0	29	1.58
15641--15693	12	4.2	14	86	13	64	15	62	7	15	1.53
17144--17169	12	2.2	12	100	0	52	53	7	30	7	1.57
18059--18084	9	2.9	9	100	0	52	34	46	11	7	1.69
18387--18437	21	2.4	21	84	12	61	13	50	27	7	1.69
19414--19445	15	2.1	15	100	0	64	18	28	40	12	1.87
19585--19628	21	2.0	22	86	4	63	13	43	29	13	1.83
19808--19909	15	6.6	15	88	10	152	28	12	50	7	1.68
19997--20038	22	1.9	22	90	9	68	9	2	59	28	1.41
20164--20201	9	4.2	9	100	0	76	10	21	44	23	1.83
20197--20233	9	4.1	9	100	0	74	0	32	45	21	1.52
20168--20252	18	4.5	19	77	16	79	7	25	44	22	1.78
20341--20382	16	2.7	15	85	10	50	7	0	57	35	1.26
20361--20398	13	2.9	13	96	0	67	10	0	50	39	1.37
20362--20404	13	3.3	13	80	6	52	11	0	48	39	1.40
20487--20528	7	6.0	7	82	0	57	16	19	23	40	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20672--20727	27	2.1	26	93	3	94	16	17	21	44	1.86
20820--20873	17	3.2	17	84	7	74	11	25	27	35	1.90
20906--20944	16	2.4	16	82	0	51	17	28	15	38	1.91
20946--21010	33	1.9	34	84	3	87	7	38	3	50	1.47
21054--21099	12	3.8	12	83	11	58	26	52	4	17	1.63
21309--21349	21	2.0	21	90	0	64	12	34	2	51	1.52
21305--21362	12	5.1	12	75	12	59	15	32	1	50	1.55
21861--21916	11	5.1	11	76	6	51	55	33	3	7	1.45
21867--21916	22	2.3	22	82	6	66	54	36	4	6	1.44
21928--21960	15	2.2	15	94	0	57	75	15	9	0	1.03
22059--22134	22	3.5	22	89	1	100	47	42	1	9	1.44
24731--24775	11	4.1	11	94	0	81	11	17	44	26	1.82
24991--25040	14	3.5	14	91	2	82	40	34	6	20	1.77
25300--25332	16	1.9	18	88	11	52	3	45	12	39	1.57
25880--25919	21	1.9	21	89	0	62	12	37	35	15	1.85
26019--26070	12	4.2	12	87	7	77	15	17	51	15	1.76
26623--26674	22	2.3	23	74	9	54	21	40	19	19	1.92
26704--26749	18	2.6	18	80	16	60	26	52	15	6	1.67
34703--34737	16	2.2	16	94	0	61	20	8	54	17	1.68
36884--36927	15	2.9	15	100	0	88	40	18	20	20	1.91
36939--36993	12	4.7	11	84	10	65	20	40	20	20	1.92
36939--36998	23	2.5	24	83	5	86	23	36	18	21	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37864--37902	20	2.0	20	89	0	60	25	25	10	38	1.87
41293--41335	22	2.0	22	85	0	59	18	2	51	27	1.59
42698--42738	14	3.1	14	76	16	52	9	60	4	24	1.47
42698--42753	25	2.3	25	90	3	87	10	58	7	23	1.56
43207--43243	13	2.8	13	95	0	65	16	32	21	29	1.95
47082--47115	14	2.4	14	100	0	68	0	0	52	47	1.00
104593--104653	20	3.0	20	100	0	122	34	19	14	31	1.92
119457--119488	11	2.9	11	100	0	64	43	9	28	18	1.81
160098--160127	15	2.0	15	93	0	51	13	50	23	13	1.77
172122--172174	27	2.0	27	96	0	97	18	41	28	11	1.85
173895--173929	12	2.9	12	91	0	52	25	37	37	0	1.57
233893--233952	12	5.0	12	87	4	77	20	36	26	16	1.93
233893--233959	24	2.8	24	76	13	59	20	40	23	14	1.90
248743--248776	15	2.3	15	94	0	59	0	52	0	47	1.00
270662--270886	48	4.7	48	84	2	265	34	32	16	16	1.92
271145--271176	15	2.1	15	100	0	64	0	56	25	18	1.42
271193--271250	15	3.9	15	95	0	98	27	32	25	13	1.94

Tables:   1

The End!