Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: scaffold54
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 431282
ACGTcount: A:0.24, C:0.26, G:0.26, T:0.24
File 1 of 2
Found at i:70224 original size:24 final size:24
Alignment explanation
Indices: 70174--70224 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
70164 GAAGGAAGAT
* * **
70174 AAGAAAAAGGCCGAAGAGGAGGCG
1 AAGAAAAAAGCCGAAGAAGAGAAG
70198 AAGAAAAAAGCCGAAGAAGAGAAG
1 AAGAAAAAAGCCGAAGAAGAGAAG
70222 AAG
1 AAG
70225 GCAGAAGAGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.55, C:0.10, G:0.35, T:0.00
Consensus pattern (24 bp):
AAGAAAAAAGCCGAAGAAGAGAAG
Left flanking sequence: Indices 69674 -- 70173
CCCTGCTGTACATTGCCGCTTTGAGTGCTGGCTTGACTGGCGAGCGTTTCAGAGATTCTGGAATG
GCGCTGGTGGACCCGGACCACTACATGATGCGCCAGGTCAACGCCCTTTACCAGGATAAGGTTGT
GCATGATCACGACCAAATGTTCTGGCAAGTTGACCTGCGGATGCTGGACGCCGCTGGGAGCATTC
AAATGCCACAATACTATCTTGACAGGTTGAGTGACGAGGAAAAGCCGCTCATTCAGCCATTTGAT
CCTCGTTTCACGTTGGCGATGTACTACGAGGCACTTGTTCGCCAGTTCCAGGAAAAAGGTCGGCC
CAGTGCTAAAGCTCGCAAACTGTTGCTGCAACACGACGCTGAGTTACCTTTCCATTGGGACGATT
GGGCAGACCTCTCTGTGTTGAACAAGTACATTTTGGATAACGAGATAGACAATAGTTGTTCCCTC
ATCGATGCTACCGACGAGGCCGTGAAGTACCATGAGAAGGAAGAT
Right flanking sequence: Indices 70225 -- 70724
GCAGAAGAGGAAGCCAAGAAAAAGGAAGAGCAGAAGCTAAAGGAAGAGGCCGAGCTCAAGGCTCA
GAAAGAGGCAATCGATGCCCAAGTCAATGCATTGGTTGAAGAGAAGTTGAAGGAGGAGGCTCAGC
TTCAAGCTGAAGCCAAGCAGGCCGAGGAAGCGAAGCAAGCCGAAGAAGCGAAGGCTGCGAACGAG
AAGCAGCAAGAGGCGGCTAAATTGGCCAATGAAGTAGCTCAATTGGGTGATGAAGCCAAAAAAGT
TGAGGATGCGAAGGCAAAGGCGGAGGAAGATGCTTTGATTGCAGCTGCTGGGCCTGCTCCAGGAG
AAAATGTCAAGCGTTCAATTTTAGAGAAGCGGACAGGCAACCTCAAAGACACGAAAAAGGCCGAA
GAGTTCTGCTTCTCCCTGGCACAGATGCCAACTGACATTAAAACTGGTAACCGCCGCAATCCCGC
ATTCAATGCTCACGCCTATCCTGGTCGACTGACCAATGAAAAGAT
Found at i:70390 original size:18 final size:18
Alignment explanation
Indices: 70363--70407 Score: 63
Period size: 18 Copynumber: 2.5 Consensus size: 18
70353 GCTTCAAGCT
* * *
70363 GAAGCCAAGCAGGCCGAG
1 GAAGCGAAGCAAGCCGAA
70381 GAAGCGAAGCAAGCCGAA
1 GAAGCGAAGCAAGCCGAA
70399 GAAGCGAAG
1 GAAGCGAAG
70408 GCTGCGAACG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.40, C:0.22, G:0.38, T:0.00
Consensus pattern (18 bp):
GAAGCGAAGCAAGCCGAA
Left flanking sequence: Indices 69863 -- 70362
GCATTCAAATGCCACAATACTATCTTGACAGGTTGAGTGACGAGGAAAAGCCGCTCATTCAGCCA
TTTGATCCTCGTTTCACGTTGGCGATGTACTACGAGGCACTTGTTCGCCAGTTCCAGGAAAAAGG
TCGGCCCAGTGCTAAAGCTCGCAAACTGTTGCTGCAACACGACGCTGAGTTACCTTTCCATTGGG
ACGATTGGGCAGACCTCTCTGTGTTGAACAAGTACATTTTGGATAACGAGATAGACAATAGTTGT
TCCCTCATCGATGCTACCGACGAGGCCGTGAAGTACCATGAGAAGGAAGATAAGAAAAAGGCCGA
AGAGGAGGCGAAGAAAAAAGCCGAAGAAGAGAAGAAGGCAGAAGAGGAAGCCAAGAAAAAGGAAG
AGCAGAAGCTAAAGGAAGAGGCCGAGCTCAAGGCTCAGAAAGAGGCAATCGATGCCCAAGTCAAT
GCATTGGTTGAAGAGAAGTTGAAGGAGGAGGCTCAGCTTCAAGCT
Right flanking sequence: Indices 70408 -- 70907
GCTGCGAACGAGAAGCAGCAAGAGGCGGCTAAATTGGCCAATGAAGTAGCTCAATTGGGTGATGA
AGCCAAAAAAGTTGAGGATGCGAAGGCAAAGGCGGAGGAAGATGCTTTGATTGCAGCTGCTGGGC
CTGCTCCAGGAGAAAATGTCAAGCGTTCAATTTTAGAGAAGCGGACAGGCAACCTCAAAGACACG
AAAAAGGCCGAAGAGTTCTGCTTCTCCCTGGCACAGATGCCAACTGACATTAAAACTGGTAACCG
CCGCAATCCCGCATTCAATGCTCACGCCTATCCTGGTCGACTGACCAATGAAAAGATGATTCTCG
CGGGCAAGCTGCACCTATATCTGTTCTTTGCTCCCCCGGAGGCCATTATTTTTTTAACAGGCGAT
GGTCTCTACCGGGTTAAAACCACTTCGCGCGAGAAGCTTCTCTACAATGGTTTGGTGGAAGACCA
TCTTGATGCTACACGCAATAGTCCCACGGTCGATGTGGTTAAGCT
Found at i:85950 original size:10 final size:11
Alignment explanation
Indices: 85924--85954 Score: 55
Period size: 10 Copynumber: 2.9 Consensus size: 11
85914 TACAACCACA
85924 TTTTCTTGGTC
1 TTTTCTTGGTC
85935 TTTTCTTGGT-
1 TTTTCTTGGTC
85945 TTTTCTTGGT
1 TTTTCTTGGT
85955 ATTGCAACAA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 10 0.50
11 10 0.50
ACGTcount: A:0.00, C:0.13, G:0.19, T:0.68
Consensus pattern (11 bp):
TTTTCTTGGTC
Left flanking sequence: Indices 85424 -- 85923
GGAAATGCCCGTGCATCGCTTAGAATATGTAAATGTACATGTACGCTTGACAACGTGGGTAGGCG
GTTCTTTCTTAGTGGGCTAATATGGGGTTACTCAGGGCAGTCGGTGAGTTAACGCCTGGTTTAAT
CTTTAATTTTTAAGAGTGGGCATGACCGCCCGGGGGCCAGGCGCTTGCGACATTCCCCGCCCTCG
CTACTCAAACAATGGCAATTCTACGTGTGATCAAATAAAATTAACTTTTCAAATCGGATTATGTC
TTTCGTAATCGTTCTCGAAACGGTAAACAGGCACCCCACGTGGGGTCTGGATACAGGAAAAAATC
TGGAGATTCAGCCGTTCCTCAAGCAAGCTAAAGACATTTGCAGCCAGTCCTTAGTAGATTAGCAT
CGACAGGTTGTCAACGAGCTACTTTTCACGCTGTTTTCCTCCTTTTCCCCTTCCGTTCTGTCAAT
TTTCCAATTGAAATGACACACGTGTGGATCTGTGATACAACCACA
Right flanking sequence: Indices 85955 -- 86454
ATTGCAACAAGGAGGCTCATCATCTATAAAAACAGGCAAAAAGACGTAGTAGACTTTCTCATCAC
TAGAAGACACTCGAGTAAAGATGGCCTTGACTCAATTTAACCACATCTTCGCGGTGACGATGATC
TTCGCGTTCTTGGACGCGTGGAACATCGGTGCCAACGATGTTGCCAACTCGTTTGCGTCGTCGGT
GTCGTCTCGTTCACTCAAGTACTGGCAAGCCATGTTGCTTGCGGGTATCTGTGAGTTCTTGGGTG
CTGTGCTTGTCGGTTCGAAGGTTTCGACCGCTATCAGAAACAAGATTGTTGATGTGAAAGCTTTT
GAGGACGAGCCCGCTGTGCTTATGTTGACCATGTCGTGCGCCCTTGTTGGCTCTTCAACCTGGTT
GACTATTGCTACTTCCATCGGTATGCCGGTTTCTACGACCCATTCTATTGTTGGTGGTATTATTG
GTGCAGCGATTGGTGCCAAGGGTCAGAAGAACGTCGTTTGGGGCT
Found at i:91137 original size:19 final size:19
Alignment explanation
Indices: 91113--91190 Score: 138
Period size: 19 Copynumber: 4.1 Consensus size: 19
91103 AAGACCACAA
91113 CGTGGTGGGAGTGTCACGT
1 CGTGGTGGGAGTGTCACGT
*
91132 CGTGGTGGGAGTATCACGT
1 CGTGGTGGGAGTGTCACGT
91151 CGTGGTGGGAGTGTCACGT
1 CGTGGTGGGAGTGTCACGT
*
91170 CGTGGTGGGAGTGCCACGT
1 CGTGGTGGGAGTGTCACGT
91189 CG
1 CG
91191 GAATGAGGAA
Statistics
Matches: 56, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 56 1.00
ACGTcount: A:0.12, C:0.18, G:0.46, T:0.24
Consensus pattern (19 bp):
CGTGGTGGGAGTGTCACGT
Left flanking sequence: Indices 90613 -- 91112
TGGCCTCAAATGGTTCGGGGGAGGGTTGGTTAGTGCTTGGTAATGGATCAGTCGCGTTGTTGTTG
CCCCTTGGACTCGTCTGGAATGGTTTGAGCCCGGCATTAGGCTGTGGCCGGGTCATTTAGGGCTG
GGGTAATCGTGGTGATCTCGATATGCAAGCGCAGGGGACAACGCGCCTGTATGTAAAACAATGAT
AGCGTGACGCGTGAATGGGAAGGAATGGTGGGAGAGTAATTGAGTTGACCAACCAAGCAAGCTTC
GCAGATTTGACAGACTCGTTCTCAAAGTGGCGTTAGAGTCTGTTGGGTTTCTTTTGATACTAGTG
TTATGAGTCTTCCCGTTTAGGATTAATCGCTGATTTAAGAGAAGTATGACAAACGCGTGGCTTGC
ATTAGGTTAAGATCCGGGAGAGTCGAAGTAAAGTCAACAGAGAGTTGAATGTCGTAATGGCTGAA
AAAGTTTTAGAGGATGGATATTTCTATTCTCCAGTAAGACCACAA
Right flanking sequence: Indices 91191 -- 91690
GAATGAGGAATGCATTGGAGGCTGTCAGCGACTTAACGTCCTCTAACTATTGTACTTAGTGACAA
TGACGTTTGGTATCCACAGCGGGGAGCAAAACCAACAGAGGCTACTATGGTAAACGTCATGTGAG
AATAAATGTTGCAGTAATGTTGATTCATTTCACAAATTATAGTTCAGACGAAATATGCAACACTA
AAATTTTGACGGCCGCGGTAGTAAGTATGTTGAAAATTCTGCTTATCTATTCGCTTGTAAGATTC
TGTTACATTAATTACGAAAACCCTTATCATCACCTCGACTGCATATATTGCTCCTTGTAGCCGCT
AAAACCCATCAACCCCAGCGATTCGAAATCGTACGATTCCTAAACGTGGGGTCAAAGCAGCTACG
GGATTGTCCACGATTGACTTCCTGATCTCGAGGATGTTGAGACGGCCTTCTCCGTCGCATGTAGG
TATGGGCTCATTGACTCCCCGCGCCCCTATGCTTGCATCACGAGT
Found at i:101944 original size:15 final size:15
Alignment explanation
Indices: 101921--101950 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
101911 TAAAACCTTG
101921 CACCAAGTTGATCTT
1 CACCAAGTTGATCTT
*
101936 CACCGAGTTGATCTT
1 CACCAAGTTGATCTT
101951 GGAACCGTCG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.23, C:0.27, G:0.17, T:0.33
Consensus pattern (15 bp):
CACCAAGTTGATCTT
Left flanking sequence: Indices 101421 -- 101920
GCCAGCATCATTGACAGCCCCAGATCAACAACCAGTACGGCCAGAGGTGGCGACAGCGTCGTTTG
AATCAGAGAAGAACCATCAGATGACGAACTCTTGAGCCCCACATGTTTGAGAAGACTTTTGACCT
TGTGTTTTGTGCCACTCACCACCAGAGACAGCGGCAGCGTCACGGGAACCAAATCCAGCGATGCG
TCCAGTTCCAGCTCCAGCAGCAGATCGTCACGGAGAGCACCCTCTGGCACGTCCCCATCGTCATC
AGGGAAAAGGTATTGATGCAAAAGTTTCGCTGTGTTCATATCCAACTGCAACTTGAGTGGCTTAA
TGGCCACCTTGGCATTCTCAACAATGGGAATCCCACCGATGGGCTCCAATTTACGCCACAGAATA
TCCACAACAGGATGCTGGCGATGGTGATGATCATTTTGATCAGCTTCGGTATCGATGATTGGTTG
GAGCATTTCAGGGTATACCGCATTACTTTGAAGATTAAAACCTTG
Right flanking sequence: Indices 101951 -- 102450
GGAACCGTCGTAAGCGTCCCACTTATGGAAACGCAAATTGGATAGAGCAATATCCACGAAAGGGT
CACGATCAGGTCCGAGTACGTGCCAAATAATCTGGTCAGCTAAAAAGTCCCAAGCTTGGTGATTT
TTGGAGCGCTGGGCACCCAGGGGAGCTAAATTCAGCAACAGAATGCCCTTGATGATAGCATGCAA
CTCGATTTTTGATCTCGTGATTTCATATTCCAACGCAAGAGCCTCAATCTTCTCGTGGTGATCGA
GAGCCCGGGTGTCAAGCCTCATGAGGATGTTGCTATACTCGCGAAGCTTCTGCTGGAGCTCCAGT
ACTCTGATATCAAGTCCCTCAAAATCCAGACCATCAGCCAACAGAACAACTTTTTCCAAGCGATC
ATTGATCGCGTCCGTGGCATTCTTGGAGTGAATCAAAAGATCAGTGACCACATAAAATATAGTGG
TATACTGACGCAGAGTTGCGTTCAACACAATTTTAGCCAATTGGA
Found at i:142931 original size:17 final size:17
Alignment explanation
Indices: 142909--143016 Score: 164
Period size: 17 Copynumber: 6.4 Consensus size: 17
142899 GCGGTTGCTA
*
142909 CTCTCGTTACACCACTC
1 CTCTCGTTACACCGCTC
*
142926 CTCTCG-TACGCCGCTC
1 CTCTCGTTACACCGCTC
142942 CTCTCGTTACACCGCTC
1 CTCTCGTTACACCGCTC
142959 CTCTCGTTACACCGCTC
1 CTCTCGTTACACCGCTC
*
142976 CTCTCGTTACACCGCTA
1 CTCTCGTTACACCGCTC
* *
142993 CTCTCATAACACCGCTC
1 CTCTCGTTACACCGCTC
143010 CTCTCGT
1 CTCTCGT
143017 ACTACCTCGT
Statistics
Matches: 82, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
16 14 0.17
17 68 0.83
ACGTcount: A:0.14, C:0.46, G:0.11, T:0.29
Consensus pattern (17 bp):
CTCTCGTTACACCGCTC
Left flanking sequence: Indices 142409 -- 142908
CGTTGAGAAACCAGTGCGGCAAGAGCGCCCACCCTATCCAGGTGAGAAGACACGCCCCTGAAATG
ACATAGATGAAGAACCCCTTGTACTCAGCGTGTGGGGTAATGCTCAGCACGGTGACATCGGACTC
ACGAGCTAACTTGTCCAGCGTGGCAATGTCCTTGGTTGTGGCGAGGTTGGAGGAGGAGGCCCATC
CGGGGCGACCAAGGGTGGCTCGTAGACTTAGAAATGACATGGTGGGGGTTTGTCCGGGTTTGTCC
GTTGCACTCGCTGAGCTGAAAAGGTCGTTTCCGTCGCGGTGCGCGCAGGCAAGTGACGTGGACGA
AAGGTGAAGAATAGAGGAGGCAAACACAAGGGTGGTAGTGTATATCTGTAGTGTTGTAACTATAA
ACAAGAACAATGCCCATCAATGGTTCCAATGGCGTACACTGGAACTCGAAAATCCCATCAACCAT
CTCAATCCTAGCGAACCAGGCAACAACTCAGTGTCGCGGTTGCTA
Right flanking sequence: Indices 143017 -- 143516
ACTACCTCGTTTCTTTTATTTATCGTGATATGCTACACCAACTGCTTTCTCGAGCCCTTGAAGAA
CAACTGGACGATGGCGATCTGCAAACCAGCCATCCCCACCATCAACAACACCTCGAGCACCGAGA
AGTAGAAGATCCGCCCCTCGGTCGACCGCACGGTGGCCTCGTTCCGGTTGTTACGGGTCTTGTAG
TAGTTGACGGCGCGCTGCAACGCGTCCAACTGGGAGTCGATCTCCGCCACCGTCAGCTCCATCAG
GGTAACGTGCTTGATGGGCTTGGCGTTGGGCAGCAGCGGCATCTTGGCCGCGTACTGGTTCGACG
CGTCCGAGTCGTGGCTGATCTCAAAGTCAATGATCTTGTCGGCGTAGGACGACATGCCGTTCTTG
AAGCAGAACTCCCACTCGCCCACCTGGTCCGCCTTGAATTGGTAGTCGCCGTTGGACTCCTTGGT
CTTGGAGTATGCAATTTCTCCGTTGGGCTTCTTGATGGTGTAGTC
Found at i:143819 original size:14 final size:13
Alignment explanation
Indices: 143796--143858 Score: 69
Period size: 14 Copynumber: 4.8 Consensus size: 13
143786 AAGGAAGGAC
*
143796 GAGCAAGGAGCGAA
1 GAGCAAGG-GCGTA
143810 GAGCAAGGAGCGTA
1 GAGCAAGG-GCGTA
143824 GAG---GGGCGTA
1 GAGCAAGGGCGTA
143834 GAGCAAGGGGCGTA
1 GAGCAA-GGGCGTA
143848 GAGCAAGGGCG
1 GAGCAAGGGCG
143859 ACGAGATAAG
Statistics
Matches: 44, Mismatches: 1, Indels: 9
0.81 0.02 0.17
Matches are distributed among these distances:
10 8 0.18
11 2 0.05
13 5 0.11
14 29 0.66
ACGTcount: A:0.32, C:0.14, G:0.49, T:0.05
Consensus pattern (13 bp):
GAGCAAGGGCGTA
Left flanking sequence: Indices 143296 -- 143795
TTGGCGTTGGGCAGCAGCGGCATCTTGGCCGCGTACTGGTTCGACGCGTCCGAGTCGTGGCTGAT
CTCAAAGTCAATGATCTTGTCGGCGTAGGACGACATGCCGTTCTTGAAGCAGAACTCCCACTCGC
CCACCTGGTCCGCCTTGAATTGGTAGTCGCCGTTGGACTCCTTGGTCTTGGAGTATGCAATTTCT
CCGTTGGGCTTCTTGATGGTGTAGTCAATGTCGAACGAGCCCCCGTTTTGCACGGCAAAGTAGTA
GCTGAACTGGGTGTTGGGGCGGTCGGTCATGGCGTACCAGCACACCGTCTCCGCCGCACGCAACT
GGAAGGTGAACGGCAGCGCCGCCACCGCGGCCAACATGTAGTAAACAAACCAAATCATAGCCGGT
CAGTGTCGTGTTCGTTGGCTTTTTTTTCACAACACGCGTGTGCACACTGGGCACGGGCGGGGCTG
CGAACGCGACCGCGTCGTAGCAAGGCGACGAGGTAAAGGAAGGAC
Right flanking sequence: Indices 143859 -- 144358
ACGAGATAAGTAGGGCGACGAGGTAAGCAGGGCGACGAGGTAGACAAGGAGCGACGCAAGCTGAA
GAAGGCAAGGTGACGCGGTGTTGGTGGTATGGGCACCGAGGTTATGATTGTCTCGTATGAGAGGT
CACTACGTTTTCTCGCTGTTAGTAGTAAGGACACCGAGAGGTCGATTGTCTCGTCACTGCCTTTC
CTCGCTGTTAATGGATGGACACCGAGGTCGATTGTCGTAACTCTACGTTCCTACACCCTTACTAT
ATGCTCTCATGTATAATGTCTATGTACGGAGTTGGTTCAACATCGCCTGCGCCCGCAAGTAAAGC
TGGTCGGTTTGCCCTTCAGGCATCTCCGGGGGTTCTTCTTCTTCCGCCGTGGCCGGCACAGGCAG
TGCCGTCGGCAAAGCGTCCTTCGTTCGGCGTCTCGTCATTCTGCGTTTCAACTGGTTGACCAGAT
CGTACTCCTTGTCCTGGTCGTCCTGGCGGAGCGCGGCGAGCTTGG
Found at i:143898 original size:17 final size:17
Alignment explanation
Indices: 143853--143900 Score: 78
Period size: 17 Copynumber: 2.8 Consensus size: 17
143843 GCGTAGAGCA
* *
143853 AGGGCGACGAGATAAGT
1 AGGGCGACGAGGTAAGC
143870 AGGGCGACGAGGTAAGC
1 AGGGCGACGAGGTAAGC
143887 AGGGCGACGAGGTA
1 AGGGCGACGAGGTA
143901 GACAAGGAGC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 29 1.00
ACGTcount: A:0.31, C:0.15, G:0.46, T:0.08
Consensus pattern (17 bp):
AGGGCGACGAGGTAAGC
Left flanking sequence: Indices 143353 -- 143852
TGGCTGATCTCAAAGTCAATGATCTTGTCGGCGTAGGACGACATGCCGTTCTTGAAGCAGAACTC
CCACTCGCCCACCTGGTCCGCCTTGAATTGGTAGTCGCCGTTGGACTCCTTGGTCTTGGAGTATG
CAATTTCTCCGTTGGGCTTCTTGATGGTGTAGTCAATGTCGAACGAGCCCCCGTTTTGCACGGCA
AAGTAGTAGCTGAACTGGGTGTTGGGGCGGTCGGTCATGGCGTACCAGCACACCGTCTCCGCCGC
ACGCAACTGGAAGGTGAACGGCAGCGCCGCCACCGCGGCCAACATGTAGTAAACAAACCAAATCA
TAGCCGGTCAGTGTCGTGTTCGTTGGCTTTTTTTTCACAACACGCGTGTGCACACTGGGCACGGG
CGGGGCTGCGAACGCGACCGCGTCGTAGCAAGGCGACGAGGTAAAGGAAGGACGAGCAAGGAGCG
AAGAGCAAGGAGCGTAGAGGGGCGTAGAGCAAGGGGCGTAGAGCA
Right flanking sequence: Indices 143901 -- 144400
GACAAGGAGCGACGCAAGCTGAAGAAGGCAAGGTGACGCGGTGTTGGTGGTATGGGCACCGAGGT
TATGATTGTCTCGTATGAGAGGTCACTACGTTTTCTCGCTGTTAGTAGTAAGGACACCGAGAGGT
CGATTGTCTCGTCACTGCCTTTCCTCGCTGTTAATGGATGGACACCGAGGTCGATTGTCGTAACT
CTACGTTCCTACACCCTTACTATATGCTCTCATGTATAATGTCTATGTACGGAGTTGGTTCAACA
TCGCCTGCGCCCGCAAGTAAAGCTGGTCGGTTTGCCCTTCAGGCATCTCCGGGGGTTCTTCTTCT
TCCGCCGTGGCCGGCACAGGCAGTGCCGTCGGCAAAGCGTCCTTCGTTCGGCGTCTCGTCATTCT
GCGTTTCAACTGGTTGACCAGATCGTACTCCTTGTCCTGGTCGTCCTGGCGGAGCGCGGCGAGCT
TGGACGCAAACGCGTCCTCCGAGTCGGGCAGCTCGGCCACCGGCG
Found at i:146758 original size:33 final size:33
Alignment explanation
Indices: 146721--146783 Score: 99
Period size: 33 Copynumber: 1.9 Consensus size: 33
146711 GGGTTCCCAA
* *
146721 CTGCTTTGGCGGCAGGGTTCCGACGGCCACCGT
1 CTGCTTCGGCGGCAGGGTTCCCACGGCCACCGT
*
146754 CTGCTTCGGTGGCAGGGTTCCCACGGCCAC
1 CTGCTTCGGCGGCAGGGTTCCCACGGCCAC
146784 GGACTTCGGT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
33 27 1.00
ACGTcount: A:0.10, C:0.35, G:0.35, T:0.21
Consensus pattern (33 bp):
CTGCTTCGGCGGCAGGGTTCCCACGGCCACCGT
Left flanking sequence: Indices 146221 -- 146720
GGAGGCGGTGGAGCCAGCGAGCCACCCAAGAAGCCAGGCACGGGTGGAGGTGGTGGTGGTGCACC
CGTCTGGCTCGTCTGGTTCGCGGCCTGACCCGCCTTTTCCTCCAAAAAGGACGGCATCGGTGGAG
GCGGCGGAGGTCCAGCCACAGTGTCCGTGGCGTCCGTCGCGTCGGTGGCTGCCAGGCCCGTCTCC
GTCAGCGTCGCCAGAGACCCCACGCTGGTGTCCAACGCCCGCCCGGCCTTCAGGATGGGCGACAT
GTCCACCGTCTGCGGCGACGCCGTGCCCGAGGTGTCCGCCTGCTTGATGGGCGACAACGCGATCT
CGGTGCGCACCGGGGGTGGAAGCTTGCCCGGCAGCCGGATCGCGCCCAGGTACTGCTTGGGCGGC
AGCGTCCCCACCGCCATCGAGTGGGTGACCTTGGGTGGCAGCGTCCCCACCGCCATCGAGTGTTT
GGACAGGGTGCCGATGGTCACGTGCTTGGGTTGCAGGGTTCCCAA
Right flanking sequence: Indices 146784 -- 147283
GGACTTCGGTGGCTGCGTCCCCGCCTGCTTCGGCGGCAGCGTGCCCACCGCCACCAGGTGCTTCA
CCGGCTCGGCCCGCGCGGGCTCCGGCAGCAGCAGCGGCAGCACGTCGACAAACTGGAACGAGTCG
TCGTGCGGGTTGTGCACCATGCGGCGGGTGCGGCGGCGCTTCTTGTTGTCGCGGCGCGGGTCGGC
GACGCTGTCGAGCCCGCTCGAGTCCGCCTCGCTGCCCACGTCGACAAACGGGTCCGACCCGCCGG
TGGAGGTGCCCGACAGTACCAAGATCGGCTGCGACGCCAGCCCCTTGCCGTCATCGTCGTCGCTG
TCGGCGTCCTCCATGTTGTCGAGCATCAACAGCAACCGGTTGCGGGTTTCCAGCGGGTACTGGCG
TGCCAGCGGCGGCGCGTCGGGCTCGTCGTCCGACACCTCGTAGAACACGATGGGCTGGCTGAGCC
CGGGCGACCCGCGCGGCGACCCGGTGGGCAGCGACGTGCCCAACG
Found at i:146793 original size:30 final size:31
Alignment explanation
Indices: 146722--146796 Score: 82
Period size: 33 Copynumber: 2.4 Consensus size: 31
146712 GGTTCCCAAC
* * *
146722 TGCTTTGGCGGCAGGGTTCCGACGGCCACCG
1 TGCTTCGGTGGCAGGGTTCCCACGGCCACCG
146753 TCTGCTTCGGTGGCAGGGTTCCCACGGCCA-CG
1 --TGCTTCGGTGGCAGGGTTCCCACGGCCACCG
146785 -GACTTCGGTGGC
1 TG-CTTCGGTGGC
146797 TGCGTCCCCG
Statistics
Matches: 38, Mismatches: 3, Indels: 5
0.83 0.07 0.11
Matches are distributed among these distances:
29 1 0.03
30 10 0.26
32 2 0.05
33 25 0.66
ACGTcount: A:0.09, C:0.32, G:0.37, T:0.21
Consensus pattern (31 bp):
TGCTTCGGTGGCAGGGTTCCCACGGCCACCG
Left flanking sequence: Indices 146222 -- 146721
GAGGCGGTGGAGCCAGCGAGCCACCCAAGAAGCCAGGCACGGGTGGAGGTGGTGGTGGTGCACCC
GTCTGGCTCGTCTGGTTCGCGGCCTGACCCGCCTTTTCCTCCAAAAAGGACGGCATCGGTGGAGG
CGGCGGAGGTCCAGCCACAGTGTCCGTGGCGTCCGTCGCGTCGGTGGCTGCCAGGCCCGTCTCCG
TCAGCGTCGCCAGAGACCCCACGCTGGTGTCCAACGCCCGCCCGGCCTTCAGGATGGGCGACATG
TCCACCGTCTGCGGCGACGCCGTGCCCGAGGTGTCCGCCTGCTTGATGGGCGACAACGCGATCTC
GGTGCGCACCGGGGGTGGAAGCTTGCCCGGCAGCCGGATCGCGCCCAGGTACTGCTTGGGCGGCA
GCGTCCCCACCGCCATCGAGTGGGTGACCTTGGGTGGCAGCGTCCCCACCGCCATCGAGTGTTTG
GACAGGGTGCCGATGGTCACGTGCTTGGGTTGCAGGGTTCCCAAC
Right flanking sequence: Indices 146797 -- 147296
TGCGTCCCCGCCTGCTTCGGCGGCAGCGTGCCCACCGCCACCAGGTGCTTCACCGGCTCGGCCCG
CGCGGGCTCCGGCAGCAGCAGCGGCAGCACGTCGACAAACTGGAACGAGTCGTCGTGCGGGTTGT
GCACCATGCGGCGGGTGCGGCGGCGCTTCTTGTTGTCGCGGCGCGGGTCGGCGACGCTGTCGAGC
CCGCTCGAGTCCGCCTCGCTGCCCACGTCGACAAACGGGTCCGACCCGCCGGTGGAGGTGCCCGA
CAGTACCAAGATCGGCTGCGACGCCAGCCCCTTGCCGTCATCGTCGTCGCTGTCGGCGTCCTCCA
TGTTGTCGAGCATCAACAGCAACCGGTTGCGGGTTTCCAGCGGGTACTGGCGTGCCAGCGGCGGC
GCGTCGGGCTCGTCGTCCGACACCTCGTAGAACACGATGGGCTGGCTGAGCCCGGGCGACCCGCG
CGGCGACCCGGTGGGCAGCGACGTGCCCAACGGGCCCGCGTCCTT
Found at i:148192 original size:15 final size:13
Alignment explanation
Indices: 148149--148198 Score: 68
Period size: 12 Copynumber: 3.8 Consensus size: 13
148139 CCTTGATGGA
148149 GTCGTGCTTCA-T
1 GTCGTGCTTCAGT
148161 GTCGTGCTTC-GT
1 GTCGTGCTTCAGT
148173 GTCGTGCTTCGAGCT
1 GTCGTGCTTC-AG-T
148188 GTCGTGCTTCA
1 GTCGTGCTTCA
148199 TGGTGTCGCG
Statistics
Matches: 34, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
12 21 0.62
14 2 0.06
15 11 0.32
ACGTcount: A:0.06, C:0.26, G:0.30, T:0.38
Consensus pattern (13 bp):
GTCGTGCTTCAGT
Left flanking sequence: Indices 147649 -- 148148
AACCGCGGCTGGTCGCGCCGCGTCGACCGCTCGGGCGGCTGGATCAGCTCGGGCAGCGCCACCAC
CAGCGGCGGCGACCACGGGTGCGCCGAGCCCGGCTCGTCGCTGGCGGCACTGGTGTCGATGTCGA
CAAAGTACGACGGCTGCCGCGACCGCAGCTCCGCCAGGTTGCGCCGCAGCAGTGCCCAGTCGGCG
TGCGGTGCCGGTGGCGGCTCCAACAGCTCGGGCACGTTCTCCACCAGCAGCAAGCTGTCGCGGTC
GGAGAGGAACCCGGGCACGGGCGGCGCTGGTGGCGCTGGGAGCGGCTTGTTGATGTGGCCGCGGC
GGCGGCGGCGCTTCTTGGGCTCCTCGGTGCTGGGTGTCTGGCTGAGGTTTTCCTGCAGCAGCACT
GCGTCGACAAACCGCAGGTCCAGCAGGTGGAACGACCCCACCAGCGCCACCCGCGGGTCGTCCAC
CACCCGGTGCGGCGCGCGCAACCCGTCGCGGGCCTCCTTGATGGA
Right flanking sequence: Indices 148199 -- 148698
TGGTGTCGCGGAGCACGTGGATGCCGTACTCGCGGGAGCCCGTGGTGTCGGGCGGGTTTTCGAAT
GCGGGCAGGTCCTTGAACTCGAACGGGTCGTCGAACTCGGGCAGGGCGGGCTGGTCTAGCGAGGA
AGGGTCTTCCGCCCGCTCTTTGAACTCCGCCCGCTCTTTGTACTCCGCCCGCTCTTTAAACTCCG
GCTCCGACTCCTCAAGCCCGTCCACCGTGAGCTCGCGCTCCTCGGCAATCGCCTTGTCAATGGTG
GGCCGCCGGCCAACGCCCAAGCTGCGGGTGGCACTACGGGCACTAAACATCCGCTCCAACTCGTT
GATAAAGTCCGCGCTCACCGCAAACAGCGTGTCGCCCGTCAGCAGCGCCGTCTCCTGGGTGGCCA
TCAGGAACCGCTGCGGCGGGTCGAGCGCGCGCGGGCCGTCCGCCAACATCCGCTGGTAGACGCTC
TCGGTGTGGCACCCGCGGTCGGTGATCTGGTACACCGCCAGGTCG
Found at i:148196 original size:27 final size:24
Alignment explanation
Indices: 148149--148197 Score: 71
Period size: 27 Copynumber: 1.9 Consensus size: 24
148139 CCTTGATGGA
148149 GTCGTGCTTCATGTCGTGCTTCGT
1 GTCGTGCTTCATGTCGTGCTTCGT
148173 GTCGTGCTTCGAGCTGTCGTGCTTC
1 GTCGTGCTTC-A--TGTCGTGCTTC
148198 ATGGTGTCGC
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
24 10 0.45
25 1 0.05
27 11 0.50
ACGTcount: A:0.04, C:0.27, G:0.31, T:0.39
Consensus pattern (24 bp):
GTCGTGCTTCATGTCGTGCTTCGT
Left flanking sequence: Indices 147649 -- 148148
AACCGCGGCTGGTCGCGCCGCGTCGACCGCTCGGGCGGCTGGATCAGCTCGGGCAGCGCCACCAC
CAGCGGCGGCGACCACGGGTGCGCCGAGCCCGGCTCGTCGCTGGCGGCACTGGTGTCGATGTCGA
CAAAGTACGACGGCTGCCGCGACCGCAGCTCCGCCAGGTTGCGCCGCAGCAGTGCCCAGTCGGCG
TGCGGTGCCGGTGGCGGCTCCAACAGCTCGGGCACGTTCTCCACCAGCAGCAAGCTGTCGCGGTC
GGAGAGGAACCCGGGCACGGGCGGCGCTGGTGGCGCTGGGAGCGGCTTGTTGATGTGGCCGCGGC
GGCGGCGGCGCTTCTTGGGCTCCTCGGTGCTGGGTGTCTGGCTGAGGTTTTCCTGCAGCAGCACT
GCGTCGACAAACCGCAGGTCCAGCAGGTGGAACGACCCCACCAGCGCCACCCGCGGGTCGTCCAC
CACCCGGTGCGGCGCGCGCAACCCGTCGCGGGCCTCCTTGATGGA
Right flanking sequence: Indices 148198 -- 148697
ATGGTGTCGCGGAGCACGTGGATGCCGTACTCGCGGGAGCCCGTGGTGTCGGGCGGGTTTTCGAA
TGCGGGCAGGTCCTTGAACTCGAACGGGTCGTCGAACTCGGGCAGGGCGGGCTGGTCTAGCGAGG
AAGGGTCTTCCGCCCGCTCTTTGAACTCCGCCCGCTCTTTGTACTCCGCCCGCTCTTTAAACTCC
GGCTCCGACTCCTCAAGCCCGTCCACCGTGAGCTCGCGCTCCTCGGCAATCGCCTTGTCAATGGT
GGGCCGCCGGCCAACGCCCAAGCTGCGGGTGGCACTACGGGCACTAAACATCCGCTCCAACTCGT
TGATAAAGTCCGCGCTCACCGCAAACAGCGTGTCGCCCGTCAGCAGCGCCGTCTCCTGGGTGGCC
ATCAGGAACCGCTGCGGCGGGTCGAGCGCGCGCGGGCCGTCCGCCAACATCCGCTGGTAGACGCT
CTCGGTGTGGCACCCGCGGTCGGTGATCTGGTACACCGCCAGGTC
Found at i:148205 original size:15 final size:14
Alignment explanation
Indices: 148149--148206 Score: 61
Period size: 12 Copynumber: 4.3 Consensus size: 14
148139 CCTTGATGGA
148149 GTCGTGCTTCA--T
1 GTCGTGCTTCAGGT
148161 GTCGTGCTTC--GT
1 GTCGTGCTTCAGGT
*
148173 GTCGTGCTTCGAGCT
1 GTCGTGCTTC-AGGT
148188 GTCGTGCTTCATGGT
1 GTCGTGCTTCA-GGT
148203 GTCG
1 GTCG
148207 CGGAGCACGT
Statistics
Matches: 39, Mismatches: 2, Indels: 7
0.81 0.04 0.15
Matches are distributed among these distances:
12 21 0.54
14 1 0.03
15 17 0.44
ACGTcount: A:0.05, C:0.24, G:0.33, T:0.38
Consensus pattern (14 bp):
GTCGTGCTTCAGGT
Left flanking sequence: Indices 147649 -- 148148
AACCGCGGCTGGTCGCGCCGCGTCGACCGCTCGGGCGGCTGGATCAGCTCGGGCAGCGCCACCAC
CAGCGGCGGCGACCACGGGTGCGCCGAGCCCGGCTCGTCGCTGGCGGCACTGGTGTCGATGTCGA
CAAAGTACGACGGCTGCCGCGACCGCAGCTCCGCCAGGTTGCGCCGCAGCAGTGCCCAGTCGGCG
TGCGGTGCCGGTGGCGGCTCCAACAGCTCGGGCACGTTCTCCACCAGCAGCAAGCTGTCGCGGTC
GGAGAGGAACCCGGGCACGGGCGGCGCTGGTGGCGCTGGGAGCGGCTTGTTGATGTGGCCGCGGC
GGCGGCGGCGCTTCTTGGGCTCCTCGGTGCTGGGTGTCTGGCTGAGGTTTTCCTGCAGCAGCACT
GCGTCGACAAACCGCAGGTCCAGCAGGTGGAACGACCCCACCAGCGCCACCCGCGGGTCGTCCAC
CACCCGGTGCGGCGCGCGCAACCCGTCGCGGGCCTCCTTGATGGA
Right flanking sequence: Indices 148207 -- 148706
CGGAGCACGTGGATGCCGTACTCGCGGGAGCCCGTGGTGTCGGGCGGGTTTTCGAATGCGGGCAG
GTCCTTGAACTCGAACGGGTCGTCGAACTCGGGCAGGGCGGGCTGGTCTAGCGAGGAAGGGTCTT
CCGCCCGCTCTTTGAACTCCGCCCGCTCTTTGTACTCCGCCCGCTCTTTAAACTCCGGCTCCGAC
TCCTCAAGCCCGTCCACCGTGAGCTCGCGCTCCTCGGCAATCGCCTTGTCAATGGTGGGCCGCCG
GCCAACGCCCAAGCTGCGGGTGGCACTACGGGCACTAAACATCCGCTCCAACTCGTTGATAAAGT
CCGCGCTCACCGCAAACAGCGTGTCGCCCGTCAGCAGCGCCGTCTCCTGGGTGGCCATCAGGAAC
CGCTGCGGCGGGTCGAGCGCGCGCGGGCCGTCCGCCAACATCCGCTGGTAGACGCTCTCGGTGTG
GCACCCGCGGTCGGTGATCTGGTACACCGCCAGGTCGACAAGCGC
Found at i:148359 original size:18 final size:18
Alignment explanation
Indices: 148336--148393 Score: 98
Period size: 18 Copynumber: 3.2 Consensus size: 18
148326 GGAAGGGTCT
148336 TCCGCCCGCTCTTTGAAC
1 TCCGCCCGCTCTTTGAAC
*
148354 TCCGCCCGCTCTTTGTAC
1 TCCGCCCGCTCTTTGAAC
*
148372 TCCGCCCGCTCTTTAAAC
1 TCCGCCCGCTCTTTGAAC
148390 TCCG
1 TCCG
148394 GCTCCGACTC
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
18 37 1.00
ACGTcount: A:0.10, C:0.45, G:0.16, T:0.29
Consensus pattern (18 bp):
TCCGCCCGCTCTTTGAAC
Left flanking sequence: Indices 147836 -- 148335
AGTCGGCGTGCGGTGCCGGTGGCGGCTCCAACAGCTCGGGCACGTTCTCCACCAGCAGCAAGCTG
TCGCGGTCGGAGAGGAACCCGGGCACGGGCGGCGCTGGTGGCGCTGGGAGCGGCTTGTTGATGTG
GCCGCGGCGGCGGCGGCGCTTCTTGGGCTCCTCGGTGCTGGGTGTCTGGCTGAGGTTTTCCTGCA
GCAGCACTGCGTCGACAAACCGCAGGTCCAGCAGGTGGAACGACCCCACCAGCGCCACCCGCGGG
TCGTCCACCACCCGGTGCGGCGCGCGCAACCCGTCGCGGGCCTCCTTGATGGAGTCGTGCTTCAT
GTCGTGCTTCGTGTCGTGCTTCGAGCTGTCGTGCTTCATGGTGTCGCGGAGCACGTGGATGCCGT
ACTCGCGGGAGCCCGTGGTGTCGGGCGGGTTTTCGAATGCGGGCAGGTCCTTGAACTCGAACGGG
TCGTCGAACTCGGGCAGGGCGGGCTGGTCTAGCGAGGAAGGGTCT
Right flanking sequence: Indices 148394 -- 148893
GCTCCGACTCCTCAAGCCCGTCCACCGTGAGCTCGCGCTCCTCGGCAATCGCCTTGTCAATGGTG
GGCCGCCGGCCAACGCCCAAGCTGCGGGTGGCACTACGGGCACTAAACATCCGCTCCAACTCGTT
GATAAAGTCCGCGCTCACCGCAAACAGCGTGTCGCCCGTCAGCAGCGCCGTCTCCTGGGTGGCCA
TCAGGAACCGCTGCGGCGGGTCGAGCGCGCGCGGGCCGTCCGCCAACATCCGCTGGTAGACGCTC
TCGGTGTGGCACCCGCGGTCGGTGATCTGGTACACCGCCAGGTCGACAAGCGCCAACTGGCGCGC
GAGCGCCTGCTCGGACCACCCGGCCCGCGTCAACGCCGCCACCAGGTCAAACACCGCGCGCAAAA
AGTCGTCGTCGTCGCCGGAAAAGTCGCCGTGGGTGCGCTGGAACGTCTGGCGGATCACCAACTTG
AAGCGGTCGTCCAACACCGTCAGCGCCTGCGACACCGCCGCCAGC
Found at i:151189 original size:9 final size:9
Alignment explanation
Indices: 151175--151204 Score: 60
Period size: 9 Copynumber: 3.3 Consensus size: 9
151165 ATGTGCGTAA
151175 TAGGTGCGG
1 TAGGTGCGG
151184 TAGGTGCGG
1 TAGGTGCGG
151193 TAGGTGCGG
1 TAGGTGCGG
151202 TAG
1 TAG
151205 TAGGTGCGAG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.13, C:0.10, G:0.53, T:0.23
Consensus pattern (9 bp):
TAGGTGCGG
Left flanking sequence: Indices 150675 -- 151174
GGGCTTCTGCAGCGACGGGGCCGTGTCGTACCCTAGTGCCGCAAACTGGGCGTCGTCGTCGCCAG
CCGCCATCTGGTGGAAGTTGATGATCGACGCCGACTTGCCAAGCCGTTTTATCCCCTTGGAAAAC
GCCGATTTTCGAGACCCGCGTTCTTCCATGCTATGCGAGGGTATGCGAAACGACGGTTGAGGGTG
GGGGGCGTGTGGGGTAGGAGAAGAGGCGGATCAAACTCGGTTTCGGTGTCGTGTTTGGTATCATT
CAATATTTGTGCGCACCCGCGGGTGGGGCTCGTAACCGCGCGTAGCAAGAGTGGTGGCCGCGAGC
GGTGGACGGTGGGTGGACGGCGGCGGAGGGTGGGGGTTTCGTTTAGGTGTTCTAGATGGTGTGTT
CCGGCGGTTTTTGGTTCTGCTGTTTACGGTGTTTTTGTGTTCCGGTTCGTGGCCGGGGTAGGTTA
GTTGTCGATCATCTGTGGGGGATGAGCATATGAGAATGTGCGTAA
Right flanking sequence: Indices 151205 -- 151704
TAGGTGCGAGTAGTTGCAGTGCTGGCAGTGACAGACACTCCGACATATCCCGGGGAATCCCAGAG
TGCGCGGCTCAGGCGCTCGCTGTTGACCGATCATACAGAACACGTTTGTAGGGAGGCGCCAGGCC
GTGCAGGCGTGTAGAGTGGGTGGGTGGAGTTGGTGAGGAGAGTAGGGTAGGGTACGTAGATGGTA
GAGACACTAGGTACTGCTGGCTGCGGGTGCGGTTGACCTATGTGTCTACAGTCCGGCTAGACCTG
CCTTGTATCTGGGTGTGCCTGGTTAGTAGCCGCGGTCTTTATCCGTTGAAGGCTTGCACTATTTT
AGTCGAGATTGTCCGTATGGGGAAGGCGGACGCATGGCTGACCCGCCTCGGGTTTCATTCTACCT
GCCTTCAACAAGGTGGCCATCCAGCTCCGCAGCTCGATACTCGGTACCTCGCAGGCTCCGATGGA
GGTTGTCCAGGCTTGTGCTCGCCTCGTAAGTTAAATCCGCTTATG
Found at i:152417 original size:12 final size:12
Alignment explanation
Indices: 152400--152463 Score: 101
Period size: 12 Copynumber: 5.3 Consensus size: 12
152390 TCAAAACCAA
152400 ACCAGTGGCAGC
1 ACCAGTGGCAGC
152412 ACCAGTGGCAGC
1 ACCAGTGGCAGC
152424 ACCAGTGGCAGC
1 ACCAGTGGCAGC
**
152436 ACCAACGGCAGC
1 ACCAGTGGCAGC
*
152448 ACAAGTGGCAGC
1 ACCAGTGGCAGC
152460 ACCA
1 ACCA
152464 ACGGCGGAAA
Statistics
Matches: 46, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
12 46 1.00
ACGTcount: A:0.30, C:0.34, G:0.30, T:0.06
Consensus pattern (12 bp):
ACCAGTGGCAGC
Left flanking sequence: Indices 151900 -- 152399
AGGGCTCGTCATGTCATCGTGCTTGACATTCTCTTGTGATTTGTTTTAGGTTGGTTTGGTCGCAA
ACAATCGGGTTTCCGAGTATAATTGCAAAACTTGTAGCGAAAATGTAGTGCGTCTTCAATGCTGG
AAGAAGAGATGATGGCGTACTATAATTACTCTATTGTTCCGAATAGGTTTACATTATACCCCACG
CCATTGATCGCCTCTGTTGCAATCCAGCTGCTCCTACGGTACACGTCAACCGAACGCTGAGCAGT
GCTTCAAGATACATGAAATTATTTACAGACACGGAGGACAGTTGTCATCATGCCACGTATCTACC
TCAACACTCGAGCCCTGGACTTATTTCATCTGGCATCAAATAAGCCCAAACTGGAGAACACCCCA
TACAGCTGTTAAATTTGGATGTTCTGCCAAATAGGTTTATGACACATGTCTAGACGATCAAGTCC
TGCATTCTACATGTTTTGATCACACAGAACAAGGATCAAAACCAA
Right flanking sequence: Indices 152464 -- 152963
ACGGCGGAAATCTGTTGTTATATCTTGGTTGTTTTAGCCAGCGACCAGCGTGTGTGGCCTTTCCA
GTTTCTTGATCACAGCTTTTTTCGCACGGCCACTCAGCAATTACACGCGATCCCACGAACTTCTA
GCGCTTTTCTTACCCTCGCACTAAACTTCGCGCGAAGGAATTTTGTTTACCATGTCTGCTACACG
CCAACTGCTGCTACAAGACTTCTTCAGCATAAAAAAAGCAGTGGCCGCCCCCAAAAAGGAGGTCA
AAAAGGAAACAGTGGTCATTGATCTCGATAAAGACTACGATGTGGCCAAACCAGCGTCGCAACCG
CTTCCAAAACGCGTCCTTCTGCCGCCGCGACGCGTCACCAAGGTCAGCCGCACCAGCAGTATGCT
AATGCTGGGCCTGTTCGAAGGGTTTGACGACGACGGCCCGCTGCTGCTGGATGCTTACGACACGC
TGATAGAGGTGTTGAACTATAGCAACGACCATCTCGCCGCCTGGG
Found at i:157056 original size:51 final size:52
Alignment explanation
Indices: 156917--157071 Score: 152
Period size: 51 Copynumber: 3.0 Consensus size: 52
156907 TAGCAGTAGT
* * * *
156917 GAGCCCGAGCCCGAGCCCACTACTGAGTCTGAGGTACCCTTGCCTCCCACCA
1 GAGCCTGAACCCGAGCCCACTACTGAATCTGAGGTACCCTTGCCTTCCACCA
** * * * * * *
156969 GTGAGCCTGAACAAGAACCCACTATTGAGA-CCGAGGTGCCTTTGCCTTCTACC-
1 --GAGCCTGAACCCGAGCCCACTACTGA-ATCTGAGGTACCCTTGCCTTCCACCA
*
157022 GAGCCTGAACCCGAGCCCACTACTGAATCTGAGGTCCCCTTGCCTTCCAC
1 GAGCCTGAACCCGAGCCCACTACTGAATCTGAGGTACCCTTGCCTTCCAC
157072 GAGCGTGCCT
Statistics
Matches: 79, Mismatches: 20, Indels: 7
0.75 0.19 0.07
Matches are distributed among these distances:
50 1 0.01
51 40 0.51
54 38 0.48
ACGTcount: A:0.21, C:0.37, G:0.22, T:0.19
Consensus pattern (52 bp):
GAGCCTGAACCCGAGCCCACTACTGAATCTGAGGTACCCTTGCCTTCCACCA
Left flanking sequence: Indices 156417 -- 156916
TGAATGCCGATTCCGACGGTAACGGAAATGCCCAAAAGGTCATCACTTCTACGTGGACTGGTACG
ACTACTATGGTTACTACGTTGAACCCAGCACCTTCTGGCGCCATTGGTGTCACCGAAACTGTTAT
CGTCAACGTGCCTGGGCCCAGTACTGCTGAGTCCACCACGACCACTTCTTCGACGACTACCACCA
CTCCCACTCCCGAACCGACTACCAGTGCCTCGCCCACCCCCTTGTCCAGCAGCACGCCCCCTCCC
ACTACCTCAAGCCTGAGCTCGACTACCTCGTCTACCACTTCTTCGACTACTTCTTCGTCGACCAC
TTCTCTCCCTAAACCGACCACCACTTCGGTCGTGCCCACAACTTCCCTGAGCTCGTCTCAGTCCG
CCACTTCTAACACTAGCTCCGAGCTGTGTATTTCGGTTACCGTTACTGAAGTTGTGACCCCCACG
GTTACTGAAACCGTGTTCCCCACTCTCCTGCCTTCTAGCAGTAGT
Right flanking sequence: Indices 157072 -- 157571
GAGCGTGCCTGCTCCTGAACCCGAACCTACCACTGAATCCGAAGTGCCGTTGCCTTCTTCCAGTG
AAACCGTGCCTGAGCCCGAACCTACCACTGTAACCGAGGTACCTTTGCCTTCTACCAGCGTGCCC
GTGCCTGAGCCCGAGCCCACTACGGTGACCGAGGTGCCCTTGCCGTCGGAGAGTGTTCCTGTCCC
CGAACCTGAACCCACTACCGAGACCGAGGTTCCTTTGCCTTCCACCAGCGTGCCCGTGCCCGAGC
CTGAGCCCACTACTGTGACAGAGGTGCCCTTGCCCTCTGAAAGTGAGCCTGTCCCCGAACCCGAG
CCCACTACCGAGGCCGAGGTCCCCTTGCCTTCCACTAGTGCACATGTGCCTGAGCCTGAACCTAC
TACGAAGACTGAAGTGCCCTTACCTTCCGAGAGTGTACCCGCCCCCGAGCCCGAGCAGCCCGAGC
CCACACCTGAGCCTGAGCAGCCGAAGCCTGAGCCCGAGCAGCCCG
Found at i:157204 original size:60 final size:60
Alignment explanation
Indices: 157024--157215 Score: 181
Period size: 60 Copynumber: 3.2 Consensus size: 60
157014 CTTCTACCGA
* * * * * * * * *
157024 GCCTGAACCCGAGCCCACTACTGAATCTGAGGTCCCCTTGCCTTCCACGAGCGTGCCTGCT
1 GCCTGAGCCCGAACCTACCACTGAATCCGAGGTACCCTTGCCTTCTACCAGCGTGCCCG-T
* * * * * * ***
157085 -CCTGAACCCGAACCTACCACTGAATCCGAAGTGCCGTTGCCTTCTTCCAGTGAAACCGT
1 GCCTGAGCCCGAACCTACCACTGAATCCGAGGTACCCTTGCCTTCTACCAGCGTGCCCGT
*
157144 GCCTGAGCCCGAACCTACCACTGTAA-CCGAGGTACCTTTGCCTTCTACCAGCGTGCCCGT
1 GCCTGAGCCCGAACCTACCACTG-AATCCGAGGTACCCTTGCCTTCTACCAGCGTGCCCGT
157204 GCCTGAGCCCGA
1 GCCTGAGCCCGA
157216 GCCCACTACG
Statistics
Matches: 105, Mismatches: 24, Indels: 5
0.78 0.18 0.04
Matches are distributed among these distances:
59 1 0.01
60 102 0.97
61 2 0.02
ACGTcount: A:0.19, C:0.38, G:0.22, T:0.21
Consensus pattern (60 bp):
GCCTGAGCCCGAACCTACCACTGAATCCGAGGTACCCTTGCCTTCTACCAGCGTGCCCGT
Left flanking sequence: Indices 156524 -- 157023
ATTGGTGTCACCGAAACTGTTATCGTCAACGTGCCTGGGCCCAGTACTGCTGAGTCCACCACGAC
CACTTCTTCGACGACTACCACCACTCCCACTCCCGAACCGACTACCAGTGCCTCGCCCACCCCCT
TGTCCAGCAGCACGCCCCCTCCCACTACCTCAAGCCTGAGCTCGACTACCTCGTCTACCACTTCT
TCGACTACTTCTTCGTCGACCACTTCTCTCCCTAAACCGACCACCACTTCGGTCGTGCCCACAAC
TTCCCTGAGCTCGTCTCAGTCCGCCACTTCTAACACTAGCTCCGAGCTGTGTATTTCGGTTACCG
TTACTGAAGTTGTGACCCCCACGGTTACTGAAACCGTGTTCCCCACTCTCCTGCCTTCTAGCAGT
AGTGAGCCCGAGCCCGAGCCCACTACTGAGTCTGAGGTACCCTTGCCTCCCACCAGTGAGCCTGA
ACAAGAACCCACTATTGAGACCGAGGTGCCTTTGCCTTCTACCGA
Right flanking sequence: Indices 157216 -- 157715
GCCCACTACGGTGACCGAGGTGCCCTTGCCGTCGGAGAGTGTTCCTGTCCCCGAACCTGAACCCA
CTACCGAGACCGAGGTTCCTTTGCCTTCCACCAGCGTGCCCGTGCCCGAGCCTGAGCCCACTACT
GTGACAGAGGTGCCCTTGCCCTCTGAAAGTGAGCCTGTCCCCGAACCCGAGCCCACTACCGAGGC
CGAGGTCCCCTTGCCTTCCACTAGTGCACATGTGCCTGAGCCTGAACCTACTACGAAGACTGAAG
TGCCCTTACCTTCCGAGAGTGTACCCGCCCCCGAGCCCGAGCAGCCCGAGCCCACACCTGAGCCT
GAGCAGCCGAAGCCTGAGCCCGAGCAGCCCGAGCCCACACCTGAGCCTGAGCAGCCGAAGCCTGA
GCCCGAGCAGCCCGAGCCCACGCCCGAGCCTGAGCAGCCGAAGCCCGAGCCCGAGCAGCCCCAGC
CCGAGCCTGAGCAGCCGAAGCCTGAGCCCGAGCAGCCCAAGCCCG
Found at i:157233 original size:60 final size:60
Alignment explanation
Indices: 157052--157365 Score: 204
Period size: 60 Copynumber: 5.2 Consensus size: 60
157042 TACTGAATCT
* * * * * *
157052 GAGGTCCCCTTGCCTTCCACGAGCGTG-CC-TGCTCCTGAACCCGAACCTACCACTG-AATCC
1 GAGGTGCCCTTGCCTTCCACCAGCGTGCCCGTGC-CC-GAGCCCGAACCCACTACTGTGA-CC
* * ** * *** * * * *
157112 GAAGTGCCGTTGCCTTCTTCCAGTGAAACCGTGCCTGAGCCCGAACCTACCACTGTAACC
1 GAGGTGCCCTTGCCTTCCACCAGCGTGCCCGTGCCCGAGCCCGAACCCACTACTGTGACC
* * * * * *
157172 GAGGTACCTTTGCCTTCTACCAGCGTGCCCGTGCCTGAGCCCGAGCCCACTACGGTGACC
1 GAGGTGCCCTTGCCTTCCACCAGCGTGCCCGTGCCCGAGCCCGAACCCACTACTGTGACC
* * * * * * * * * * *
157232 GAGGTGCCCTTGCCGTCGGA-GAGTGTTCCTGTCCCCGAACCTGAACCCACTACCGAGACC
1 GAGGTGCCCTTGCCTTC-CACCAGCGTGCCCGTGCCCGAGCCCGAACCCACTACTGTGACC
* * * * *
157292 GAGGTTCCTTTGCCTTCCACCAGCGTGCCCGTGCCCGAGCCTGAGCCCACTACTGTGACA
1 GAGGTGCCCTTGCCTTCCACCAGCGTGCCCGTGCCCGAGCCCGAACCCACTACTGTGACC
157352 GAGGTGCCCTTGCC
1 GAGGTGCCCTTGCC
157366 CTCTGAAAGT
Statistics
Matches: 194, Mismatches: 55, Indels: 10
0.75 0.21 0.04
Matches are distributed among these distances:
59 1 0.01
60 184 0.95
61 6 0.03
62 3 0.02
ACGTcount: A:0.17, C:0.38, G:0.25, T:0.20
Consensus pattern (60 bp):
GAGGTGCCCTTGCCTTCCACCAGCGTGCCCGTGCCCGAGCCCGAACCCACTACTGTGACC
Left flanking sequence: Indices 156552 -- 157051
ACGTGCCTGGGCCCAGTACTGCTGAGTCCACCACGACCACTTCTTCGACGACTACCACCACTCCC
ACTCCCGAACCGACTACCAGTGCCTCGCCCACCCCCTTGTCCAGCAGCACGCCCCCTCCCACTAC
CTCAAGCCTGAGCTCGACTACCTCGTCTACCACTTCTTCGACTACTTCTTCGTCGACCACTTCTC
TCCCTAAACCGACCACCACTTCGGTCGTGCCCACAACTTCCCTGAGCTCGTCTCAGTCCGCCACT
TCTAACACTAGCTCCGAGCTGTGTATTTCGGTTACCGTTACTGAAGTTGTGACCCCCACGGTTAC
TGAAACCGTGTTCCCCACTCTCCTGCCTTCTAGCAGTAGTGAGCCCGAGCCCGAGCCCACTACTG
AGTCTGAGGTACCCTTGCCTCCCACCAGTGAGCCTGAACAAGAACCCACTATTGAGACCGAGGTG
CCTTTGCCTTCTACCGAGCCTGAACCCGAGCCCACTACTGAATCT
Right flanking sequence: Indices 157366 -- 157865
CTCTGAAAGTGAGCCTGTCCCCGAACCCGAGCCCACTACCGAGGCCGAGGTCCCCTTGCCTTCCA
CTAGTGCACATGTGCCTGAGCCTGAACCTACTACGAAGACTGAAGTGCCCTTACCTTCCGAGAGT
GTACCCGCCCCCGAGCCCGAGCAGCCCGAGCCCACACCTGAGCCTGAGCAGCCGAAGCCTGAGCC
CGAGCAGCCCGAGCCCACACCTGAGCCTGAGCAGCCGAAGCCTGAGCCCGAGCAGCCCGAGCCCA
CGCCCGAGCCTGAGCAGCCGAAGCCCGAGCCCGAGCAGCCCCAGCCCGAGCCTGAGCAGCCGAAG
CCTGAGCCCGAGCAGCCCAAGCCCGAACCCGAGCAACCTCAACCGGAGCCCGAAGTTACCAACAC
GTTAACGGTCACTATCCACCCTCCCATTGAGACTGAGCTCCCTCCCCCTGTGAACACCGTCCCCG
AGGCCCCGGCTCCGGAGGTGCCAGAACAAACCGTTGTTCCTGGCG
Found at i:157389 original size:60 final size:59
Alignment explanation
Indices: 157211--157425 Score: 196
Period size: 60 Copynumber: 3.6 Consensus size: 59
157201 CGTGCCTGAG
* * * *
157211 CCCGAGCCCACTACGGTGACCGAGGTGCCCTTGCCGTCGGAGAGTGTTCCTGTCCCCGAA
1 CCCGAGCCCACTACCGTGACCGAGGTGCCCTTGCCCTC-GAAAGTGTGCCTGTCCCCGAA
* * * * * * * * * * * *
157271 CCTGAACCCACTACCGAGACCGAGGTTCCTTTGCCTTCCACCAGCGTGCCCGTGCCCGAG
1 CCCGAGCCCACTACCGTGACCGAGGTGCCCTTGCCCTCGA-AAGTGTGCCTGTCCCCGAA
* * * *
157331 CCTGAGCCCACTACTGTGACAGAGGTGCCCTTGCCCTCTGAAAGTGAGCCTGTCCCCGAA
1 CCCGAGCCCACTACCGTGACCGAGGTGCCCTTGCCCTC-GAAAGTGTGCCTGTCCCCGAA
* * *
157391 CCCGAGCCCACTACCGAGGCCGAGGTCCCCTTGCC
1 CCCGAGCCCACTACCGTGACCGAGGTGCCCTTGCC
157426 TTCCACTAGT
Statistics
Matches: 119, Mismatches: 34, Indels: 4
0.76 0.22 0.03
Matches are distributed among these distances:
59 1 0.01
60 117 0.98
61 1 0.01
ACGTcount: A:0.17, C:0.40, G:0.26, T:0.18
Consensus pattern (59 bp):
CCCGAGCCCACTACCGTGACCGAGGTGCCCTTGCCCTCGAAAGTGTGCCTGTCCCCGAA
Left flanking sequence: Indices 156711 -- 157210
CCACTTCTTCGACTACTTCTTCGTCGACCACTTCTCTCCCTAAACCGACCACCACTTCGGTCGTG
CCCACAACTTCCCTGAGCTCGTCTCAGTCCGCCACTTCTAACACTAGCTCCGAGCTGTGTATTTC
GGTTACCGTTACTGAAGTTGTGACCCCCACGGTTACTGAAACCGTGTTCCCCACTCTCCTGCCTT
CTAGCAGTAGTGAGCCCGAGCCCGAGCCCACTACTGAGTCTGAGGTACCCTTGCCTCCCACCAGT
GAGCCTGAACAAGAACCCACTATTGAGACCGAGGTGCCTTTGCCTTCTACCGAGCCTGAACCCGA
GCCCACTACTGAATCTGAGGTCCCCTTGCCTTCCACGAGCGTGCCTGCTCCTGAACCCGAACCTA
CCACTGAATCCGAAGTGCCGTTGCCTTCTTCCAGTGAAACCGTGCCTGAGCCCGAACCTACCACT
GTAACCGAGGTACCTTTGCCTTCTACCAGCGTGCCCGTGCCTGAG
Right flanking sequence: Indices 157426 -- 157925
TTCCACTAGTGCACATGTGCCTGAGCCTGAACCTACTACGAAGACTGAAGTGCCCTTACCTTCCG
AGAGTGTACCCGCCCCCGAGCCCGAGCAGCCCGAGCCCACACCTGAGCCTGAGCAGCCGAAGCCT
GAGCCCGAGCAGCCCGAGCCCACACCTGAGCCTGAGCAGCCGAAGCCTGAGCCCGAGCAGCCCGA
GCCCACGCCCGAGCCTGAGCAGCCGAAGCCCGAGCCCGAGCAGCCCCAGCCCGAGCCTGAGCAGC
CGAAGCCTGAGCCCGAGCAGCCCAAGCCCGAACCCGAGCAACCTCAACCGGAGCCCGAAGTTACC
AACACGTTAACGGTCACTATCCACCCTCCCATTGAGACTGAGCTCCCTCCCCCTGTGAACACCGT
CCCCGAGGCCCCGGCTCCGGAGGTGCCAGAACAAACCGTTGTTCCTGGCGAACCGCCGGTGAGCC
CCGAGGTGCCACCCATGGAGGAAGCACCTGCTCCTGAGCCTGAAC
Found at i:157446 original size:120 final size:119
Alignment explanation
Indices: 157169--157465 Score: 362
Period size: 120 Copynumber: 2.5 Consensus size: 119
157159 TACCACTGTA
* * * * *
157169 ACCGAGGTACCTTTGCCTTCTACCAGCGTGCCCGTGCCTGAGCCCGAGCCCACTACGGTGACCGA
1 ACCGAGGTCCCCTTGCCTTCCACCA-CGTGCCCGTGCCTGAGCCTGAGCCCACTACGGTGACAGA
* * ** *
157234 GGTGCCCTTGCCGTCGGAGAGTGTTCCTGTCCCCGAACCTGAACCCACTACCGAG
65 GGTGCCCTTGCCCTCGGAAAGTGAGCCTGTCCCCGAACCCGAACCCACTACCGAG
* * * *
157289 ACCGAGGTTCCTTTGCCTTCCACCAGCGTGCCCGTGCCCGAGCCTGAGCCCACTACTGTGACAGA
1 ACCGAGGTCCCCTTGCCTTCCACCA-CGTGCCCGTGCCTGAGCCTGAGCCCACTACGGTGACAGA
* *
157354 GGTGCCCTTGCCCTCTGAAAGTGAGCCTGTCCCCGAACCCGAGCCCACTACCGAG
65 GGTGCCCTTGCCCTCGGAAAGTGAGCCTGTCCCCGAACCCGAACCCACTACCGAG
* * * * *
157409 GCCGAGGTCCCCTTGCCTTCCACTA-GTGCACATGTGCCTGAGCCTGAACCTACTACG
1 ACCGAGGTCCCCTTGCCTTCCACCACGTGC-C-CGTGCCTGAGCCTGAGCCCACTACG
157466 AAGACTGAAG
Statistics
Matches: 153, Mismatches: 22, Indels: 4
0.85 0.12 0.02
Matches are distributed among these distances:
118 4 0.03
119 1 0.01
120 148 0.97
ACGTcount: A:0.17, C:0.38, G:0.25, T:0.20
Consensus pattern (119 bp):
ACCGAGGTCCCCTTGCCTTCCACCACGTGCCCGTGCCTGAGCCTGAGCCCACTACGGTGACAGAG
GTGCCCTTGCCCTCGGAAAGTGAGCCTGTCCCCGAACCCGAACCCACTACCGAG
Left flanking sequence: Indices 156669 -- 157168
CCCCTCCCACTACCTCAAGCCTGAGCTCGACTACCTCGTCTACCACTTCTTCGACTACTTCTTCG
TCGACCACTTCTCTCCCTAAACCGACCACCACTTCGGTCGTGCCCACAACTTCCCTGAGCTCGTC
TCAGTCCGCCACTTCTAACACTAGCTCCGAGCTGTGTATTTCGGTTACCGTTACTGAAGTTGTGA
CCCCCACGGTTACTGAAACCGTGTTCCCCACTCTCCTGCCTTCTAGCAGTAGTGAGCCCGAGCCC
GAGCCCACTACTGAGTCTGAGGTACCCTTGCCTCCCACCAGTGAGCCTGAACAAGAACCCACTAT
TGAGACCGAGGTGCCTTTGCCTTCTACCGAGCCTGAACCCGAGCCCACTACTGAATCTGAGGTCC
CCTTGCCTTCCACGAGCGTGCCTGCTCCTGAACCCGAACCTACCACTGAATCCGAAGTGCCGTTG
CCTTCTTCCAGTGAAACCGTGCCTGAGCCCGAACCTACCACTGTA
Right flanking sequence: Indices 157466 -- 157965
AAGACTGAAGTGCCCTTACCTTCCGAGAGTGTACCCGCCCCCGAGCCCGAGCAGCCCGAGCCCAC
ACCTGAGCCTGAGCAGCCGAAGCCTGAGCCCGAGCAGCCCGAGCCCACACCTGAGCCTGAGCAGC
CGAAGCCTGAGCCCGAGCAGCCCGAGCCCACGCCCGAGCCTGAGCAGCCGAAGCCCGAGCCCGAG
CAGCCCCAGCCCGAGCCTGAGCAGCCGAAGCCTGAGCCCGAGCAGCCCAAGCCCGAACCCGAGCA
ACCTCAACCGGAGCCCGAAGTTACCAACACGTTAACGGTCACTATCCACCCTCCCATTGAGACTG
AGCTCCCTCCCCCTGTGAACACCGTCCCCGAGGCCCCGGCTCCGGAGGTGCCAGAACAAACCGTT
GTTCCTGGCGAACCGCCGGTGAGCCCCGAGGTGCCACCCATGGAGGAAGCACCTGCTCCTGAGCC
TGAACAGCCCACATTTGTGCCGTCCGCTCCTGCTCCGAGCAACCC
Found at i:157508 original size:120 final size:118
Alignment explanation
Indices: 157169--157517 Score: 360
Period size: 120 Copynumber: 2.9 Consensus size: 118
157159 TACCACTGTA
* * * * *
157169 ACCGAGGTACCTTTGCCTTCTACCAGCGTGCCCGTGCCTGAGCCCGAGCCCACTACGGTGACCGA
1 ACCGAGGTCCCCTTGCCTTCCACCA-CGTGCCCGTGCCTGAGCCTGAGCCCACTAC-GTGACAGA
* * * * *
157234 GGTGCCCTTGCCGTCGGAGAGTGTTCCTGTCCCCGAACCTGAACCCACTACCGAG
64 GGTGCCCTTGCCCTCCGAGAGTGTACCTGTCCCCGAACCCGAGCCCACTACCGAG
* * *
157289 ACCGAGGTTCCTTTGCCTTCCACCAGCGTGCCCGTGCCCGAGCCTGAGCCCACTACTGTGACAGA
1 ACCGAGGTCCCCTTGCCTTCCACCA-CGTGCCCGTGCCTGAGCCTGAGCCCACTAC-GTGACAGA
* *
157354 GGTGCCCTTGCCCTCTGAAAGTG-AGCCTGTCCCCGAACCCGAGCCCACTACCGAG
64 GGTGCCCTTGCCCTCCGAGAGTGTA-CCTGTCCCCGAACCCGAGCCCACTACCGAG
* * * * * * *
157409 GCCGAGGTCCCCTTGCCTTCCACTA-GTGCACATGTGCCTGAGCCTGAACCTACTACGAAGACTG
1 ACCGAGGTCCCCTTGCCTTCCACCACGTGC-C-CGTGCCTGAGCCTGAGCCCACTACG-TGACAG
* * * * * *
157473 AAGTGCCCTTACCTTCCGAGAGTGTACCCGCCCCCGAGCCCGAGC
63 AGGTGCCCTTGCCCTCCGAGAGTGTACCTGTCCCCGAACCCGAGC
157518 AGCCCGAGCC
Statistics
Matches: 194, Mismatches: 30, Indels: 10
0.83 0.13 0.04
Matches are distributed among these distances:
118 4 0.02
119 2 0.01
120 187 0.96
121 1 0.01
ACGTcount: A:0.18, C:0.38, G:0.25, T:0.19
Consensus pattern (118 bp):
ACCGAGGTCCCCTTGCCTTCCACCACGTGCCCGTGCCTGAGCCTGAGCCCACTACGTGACAGAGG
TGCCCTTGCCCTCCGAGAGTGTACCTGTCCCCGAACCCGAGCCCACTACCGAG
Left flanking sequence: Indices 156669 -- 157168
CCCCTCCCACTACCTCAAGCCTGAGCTCGACTACCTCGTCTACCACTTCTTCGACTACTTCTTCG
TCGACCACTTCTCTCCCTAAACCGACCACCACTTCGGTCGTGCCCACAACTTCCCTGAGCTCGTC
TCAGTCCGCCACTTCTAACACTAGCTCCGAGCTGTGTATTTCGGTTACCGTTACTGAAGTTGTGA
CCCCCACGGTTACTGAAACCGTGTTCCCCACTCTCCTGCCTTCTAGCAGTAGTGAGCCCGAGCCC
GAGCCCACTACTGAGTCTGAGGTACCCTTGCCTCCCACCAGTGAGCCTGAACAAGAACCCACTAT
TGAGACCGAGGTGCCTTTGCCTTCTACCGAGCCTGAACCCGAGCCCACTACTGAATCTGAGGTCC
CCTTGCCTTCCACGAGCGTGCCTGCTCCTGAACCCGAACCTACCACTGAATCCGAAGTGCCGTTG
CCTTCTTCCAGTGAAACCGTGCCTGAGCCCGAACCTACCACTGTA
Right flanking sequence: Indices 157518 -- 158017
AGCCCGAGCCCACACCTGAGCCTGAGCAGCCGAAGCCTGAGCCCGAGCAGCCCGAGCCCACACCT
GAGCCTGAGCAGCCGAAGCCTGAGCCCGAGCAGCCCGAGCCCACGCCCGAGCCTGAGCAGCCGAA
GCCCGAGCCCGAGCAGCCCCAGCCCGAGCCTGAGCAGCCGAAGCCTGAGCCCGAGCAGCCCAAGC
CCGAACCCGAGCAACCTCAACCGGAGCCCGAAGTTACCAACACGTTAACGGTCACTATCCACCCT
CCCATTGAGACTGAGCTCCCTCCCCCTGTGAACACCGTCCCCGAGGCCCCGGCTCCGGAGGTGCC
AGAACAAACCGTTGTTCCTGGCGAACCGCCGGTGAGCCCCGAGGTGCCACCCATGGAGGAAGCAC
CTGCTCCTGAGCCTGAACAGCCCACATTTGTGCCGTCCGCTCCTGCTCCGAGCAACCCTGTGGAG
ATTCCCGAGTACACTGGTATGGCAAACATGAAGTCGACCAACGTT
Found at i:157538 original size:21 final size:21
Alignment explanation
Indices: 157514--157586 Score: 51
Period size: 21 Copynumber: 3.2 Consensus size: 21
157504 CCCCGAGCCC
157514 GAGCAGCCCGAGCCCACACCT
1 GAGCAGCCCGAGCCCACACCT
*
157535 GAGCCTGAGCAGCCGAAGCCTGAGC-CC-
1 GAG-C--AGC--CCG-AGCC-CA-CACCT
157562 GAGCAGCCCGAGCCCACACCT
1 GAGCAGCCCGAGCCCACACCT
157583 GAGC
1 GAGC
157587 CTGAGCAGCC
Statistics
Matches: 40, Mismatches: 2, Indels: 20
0.65 0.03 0.32
Matches are distributed among these distances:
19 1 0.03
20 3 0.08
21 11 0.28
22 4 0.10
24 6 0.15
26 4 0.10
27 7 0.17
28 3 0.08
29 1 0.03
ACGTcount: A:0.23, C:0.42, G:0.29, T:0.05
Consensus pattern (21 bp):
GAGCAGCCCGAGCCCACACCT
Left flanking sequence: Indices 157014 -- 157513
CTTCTACCGAGCCTGAACCCGAGCCCACTACTGAATCTGAGGTCCCCTTGCCTTCCACGAGCGTG
CCTGCTCCTGAACCCGAACCTACCACTGAATCCGAAGTGCCGTTGCCTTCTTCCAGTGAAACCGT
GCCTGAGCCCGAACCTACCACTGTAACCGAGGTACCTTTGCCTTCTACCAGCGTGCCCGTGCCTG
AGCCCGAGCCCACTACGGTGACCGAGGTGCCCTTGCCGTCGGAGAGTGTTCCTGTCCCCGAACCT
GAACCCACTACCGAGACCGAGGTTCCTTTGCCTTCCACCAGCGTGCCCGTGCCCGAGCCTGAGCC
CACTACTGTGACAGAGGTGCCCTTGCCCTCTGAAAGTGAGCCTGTCCCCGAACCCGAGCCCACTA
CCGAGGCCGAGGTCCCCTTGCCTTCCACTAGTGCACATGTGCCTGAGCCTGAACCTACTACGAAG
ACTGAAGTGCCCTTACCTTCCGAGAGTGTACCCGCCCCCGAGCCC
Right flanking sequence: Indices 157587 -- 158086
CTGAGCAGCCGAAGCCTGAGCCCGAGCAGCCCGAGCCCACGCCCGAGCCTGAGCAGCCGAAGCCC
GAGCCCGAGCAGCCCCAGCCCGAGCCTGAGCAGCCGAAGCCTGAGCCCGAGCAGCCCAAGCCCGA
ACCCGAGCAACCTCAACCGGAGCCCGAAGTTACCAACACGTTAACGGTCACTATCCACCCTCCCA
TTGAGACTGAGCTCCCTCCCCCTGTGAACACCGTCCCCGAGGCCCCGGCTCCGGAGGTGCCAGAA
CAAACCGTTGTTCCTGGCGAACCGCCGGTGAGCCCCGAGGTGCCACCCATGGAGGAAGCACCTGC
TCCTGAGCCTGAACAGCCCACATTTGTGCCGTCCGCTCCTGCTCCGAGCAACCCTGTGGAGATTC
CCGAGTACACTGGTATGGCAAACATGAAGTCGACCAACGTTTTGGTGGCTTTGGTGGCTATCTTC
GCAATGGCGATTTAGTCAGTATACCCCTAATTAGTTTGTTGTATA
Found at i:157539 original size:27 final size:27
Alignment explanation
Indices: 157508--157682 Score: 136
Period size: 27 Copynumber: 7.1 Consensus size: 27
157498 ACCCGCCCCC
*
157508 GAGCCCGAGCAGCCCGAGCCCACACCT
1 GAGCCCGAGCAGCCCGAGCCCACGCCT
*
157535 GAGCCTGAGCAG-CCGA----A-GCCT
1 GAGCCCGAGCAGCCCGAGCCCACGCCT
*
157556 GAGCCCGAGCAGCCCGAGCCCACACCT
1 GAGCCCGAGCAGCCCGAGCCCACGCCT
*
157583 GAGCCTGAGCAG-CCGA----A-GCCT
1 GAGCCCGAGCAGCCCGAGCCCACGCCT
*
157604 GAGCCCGAGCAGCCCGAGCCCACGCCC
1 GAGCCCGAGCAGCCCGAGCCCACGCCT
* *
157631 GAGCCTGAGCAG-CCGA----A-GCCC
1 GAGCCCGAGCAGCCCGAGCCCACGCCT
*
157652 GAGCCCGAGCAGCCCCAGCCCGA-GCCT
1 GAGCCCGAGCAGCCCGAGCCC-ACGCCT
157679 GAGC
1 GAGC
157683 AGCCGAAGCC
Statistics
Matches: 118, Mismatches: 12, Indels: 36
0.71 0.07 0.22
Matches are distributed among these distances:
21 43 0.36
22 14 0.12
26 14 0.12
27 47 0.40
ACGTcount: A:0.22, C:0.43, G:0.30, T:0.05
Consensus pattern (27 bp):
GAGCCCGAGCAGCCCGAGCCCACGCCT
Left flanking sequence: Indices 157008 -- 157507
CTTTGCCTTCTACCGAGCCTGAACCCGAGCCCACTACTGAATCTGAGGTCCCCTTGCCTTCCACG
AGCGTGCCTGCTCCTGAACCCGAACCTACCACTGAATCCGAAGTGCCGTTGCCTTCTTCCAGTGA
AACCGTGCCTGAGCCCGAACCTACCACTGTAACCGAGGTACCTTTGCCTTCTACCAGCGTGCCCG
TGCCTGAGCCCGAGCCCACTACGGTGACCGAGGTGCCCTTGCCGTCGGAGAGTGTTCCTGTCCCC
GAACCTGAACCCACTACCGAGACCGAGGTTCCTTTGCCTTCCACCAGCGTGCCCGTGCCCGAGCC
TGAGCCCACTACTGTGACAGAGGTGCCCTTGCCCTCTGAAAGTGAGCCTGTCCCCGAACCCGAGC
CCACTACCGAGGCCGAGGTCCCCTTGCCTTCCACTAGTGCACATGTGCCTGAGCCTGAACCTACT
ACGAAGACTGAAGTGCCCTTACCTTCCGAGAGTGTACCCGCCCCC
Right flanking sequence: Indices 157683 -- 158182
AGCCGAAGCCTGAGCCCGAGCAGCCCAAGCCCGAACCCGAGCAACCTCAACCGGAGCCCGAAGTT
ACCAACACGTTAACGGTCACTATCCACCCTCCCATTGAGACTGAGCTCCCTCCCCCTGTGAACAC
CGTCCCCGAGGCCCCGGCTCCGGAGGTGCCAGAACAAACCGTTGTTCCTGGCGAACCGCCGGTGA
GCCCCGAGGTGCCACCCATGGAGGAAGCACCTGCTCCTGAGCCTGAACAGCCCACATTTGTGCCG
TCCGCTCCTGCTCCGAGCAACCCTGTGGAGATTCCCGAGTACACTGGTATGGCAAACATGAAGTC
GACCAACGTTTTGGTGGCTTTGGTGGCTATCTTCGCAATGGCGATTTAGTCAGTATACCCCTAAT
TAGTTTGTTGTATAGATAGAAAAGTTCTGAATGATTTGTGTTATGAAAGACGTAAAGTGTGTCGC
AGAAGACTTCGAAACGCCTTGTTACTAGAGAATTTCGATTATGAA
Found at i:157579 original size:48 final size:48
Alignment explanation
Indices: 157508--157714 Score: 327
Period size: 48 Copynumber: 4.4 Consensus size: 48
157498 ACCCGCCCCC
157508 GAGCCCGAGCAGCCCGAGCCCACACCTGAGCCTGAGCAGCCGAAGCCT
1 GAGCCCGAGCAGCCCGAGCCCACACCTGAGCCTGAGCAGCCGAAGCCT
157556 GAGCCCGAGCAGCCCGAGCCCACACCTGAGCCTGAGCAGCCGAAGCCT
1 GAGCCCGAGCAGCCCGAGCCCACACCTGAGCCTGAGCAGCCGAAGCCT
* * *
157604 GAGCCCGAGCAGCCCGAGCCCACGCCCGAGCCTGAGCAGCCGAAGCCC
1 GAGCCCGAGCAGCCCGAGCCCACACCTGAGCCTGAGCAGCCGAAGCCT
*
157652 GAGCCCGAGCAGCCCCAG----C-CC-GAGCCTGAGCAGCCGAAGCCT
1 GAGCCCGAGCAGCCCGAGCCCACACCTGAGCCTGAGCAGCCGAAGCCT
*
157694 GAGCCCGAGCAGCCCAAGCCC
1 GAGCCCGAGCAGCCCGAGCCC
157715 GAACCCGAGC
Statistics
Matches: 150, Mismatches: 6, Indels: 9
0.91 0.04 0.05
Matches are distributed among these distances:
42 37 0.25
43 2 0.01
44 1 0.01
48 110 0.73
ACGTcount: A:0.22, C:0.43, G:0.30, T:0.04
Consensus pattern (48 bp):
GAGCCCGAGCAGCCCGAGCCCACACCTGAGCCTGAGCAGCCGAAGCCT
Left flanking sequence: Indices 157008 -- 157507
CTTTGCCTTCTACCGAGCCTGAACCCGAGCCCACTACTGAATCTGAGGTCCCCTTGCCTTCCACG
AGCGTGCCTGCTCCTGAACCCGAACCTACCACTGAATCCGAAGTGCCGTTGCCTTCTTCCAGTGA
AACCGTGCCTGAGCCCGAACCTACCACTGTAACCGAGGTACCTTTGCCTTCTACCAGCGTGCCCG
TGCCTGAGCCCGAGCCCACTACGGTGACCGAGGTGCCCTTGCCGTCGGAGAGTGTTCCTGTCCCC
GAACCTGAACCCACTACCGAGACCGAGGTTCCTTTGCCTTCCACCAGCGTGCCCGTGCCCGAGCC
TGAGCCCACTACTGTGACAGAGGTGCCCTTGCCCTCTGAAAGTGAGCCTGTCCCCGAACCCGAGC
CCACTACCGAGGCCGAGGTCCCCTTGCCTTCCACTAGTGCACATGTGCCTGAGCCTGAACCTACT
ACGAAGACTGAAGTGCCCTTACCTTCCGAGAGTGTACCCGCCCCC
Right flanking sequence: Indices 157715 -- 158214
GAACCCGAGCAACCTCAACCGGAGCCCGAAGTTACCAACACGTTAACGGTCACTATCCACCCTCC
CATTGAGACTGAGCTCCCTCCCCCTGTGAACACCGTCCCCGAGGCCCCGGCTCCGGAGGTGCCAG
AACAAACCGTTGTTCCTGGCGAACCGCCGGTGAGCCCCGAGGTGCCACCCATGGAGGAAGCACCT
GCTCCTGAGCCTGAACAGCCCACATTTGTGCCGTCCGCTCCTGCTCCGAGCAACCCTGTGGAGAT
TCCCGAGTACACTGGTATGGCAAACATGAAGTCGACCAACGTTTTGGTGGCTTTGGTGGCTATCT
TCGCAATGGCGATTTAGTCAGTATACCCCTAATTAGTTTGTTGTATAGATAGAAAAGTTCTGAAT
GATTTGTGTTATGAAAGACGTAAAGTGTGTCGCAGAAGACTTCGAAACGCCTTGTTACTAGAGAA
TTTCGATTATGAACTTAAATGAAATCATACTCTTTTGGAACATAC
Found at i:157671 original size:15 final size:15
Alignment explanation
Indices: 157647--157676 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
157637 GAGCAGCCGA
*
157647 AGCCCGAGCCCGAGC
1 AGCCCCAGCCCGAGC
157662 AGCCCCAGCCCGAGC
1 AGCCCCAGCCCGAGC
157677 CTGAGCAGCC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.20, C:0.50, G:0.30, T:0.00
Consensus pattern (15 bp):
AGCCCCAGCCCGAGC
Left flanking sequence: Indices 157147 -- 157646
TGAGCCCGAACCTACCACTGTAACCGAGGTACCTTTGCCTTCTACCAGCGTGCCCGTGCCTGAGC
CCGAGCCCACTACGGTGACCGAGGTGCCCTTGCCGTCGGAGAGTGTTCCTGTCCCCGAACCTGAA
CCCACTACCGAGACCGAGGTTCCTTTGCCTTCCACCAGCGTGCCCGTGCCCGAGCCTGAGCCCAC
TACTGTGACAGAGGTGCCCTTGCCCTCTGAAAGTGAGCCTGTCCCCGAACCCGAGCCCACTACCG
AGGCCGAGGTCCCCTTGCCTTCCACTAGTGCACATGTGCCTGAGCCTGAACCTACTACGAAGACT
GAAGTGCCCTTACCTTCCGAGAGTGTACCCGCCCCCGAGCCCGAGCAGCCCGAGCCCACACCTGA
GCCTGAGCAGCCGAAGCCTGAGCCCGAGCAGCCCGAGCCCACACCTGAGCCTGAGCAGCCGAAGC
CTGAGCCCGAGCAGCCCGAGCCCACGCCCGAGCCTGAGCAGCCGA
Right flanking sequence: Indices 157677 -- 158176
CTGAGCAGCCGAAGCCTGAGCCCGAGCAGCCCAAGCCCGAACCCGAGCAACCTCAACCGGAGCCC
GAAGTTACCAACACGTTAACGGTCACTATCCACCCTCCCATTGAGACTGAGCTCCCTCCCCCTGT
GAACACCGTCCCCGAGGCCCCGGCTCCGGAGGTGCCAGAACAAACCGTTGTTCCTGGCGAACCGC
CGGTGAGCCCCGAGGTGCCACCCATGGAGGAAGCACCTGCTCCTGAGCCTGAACAGCCCACATTT
GTGCCGTCCGCTCCTGCTCCGAGCAACCCTGTGGAGATTCCCGAGTACACTGGTATGGCAAACAT
GAAGTCGACCAACGTTTTGGTGGCTTTGGTGGCTATCTTCGCAATGGCGATTTAGTCAGTATACC
CCTAATTAGTTTGTTGTATAGATAGAAAAGTTCTGAATGATTTGTGTTATGAAAGACGTAAAGTG
TGTCGCAGAAGACTTCGAAACGCCTTGTTACTAGAGAATTTCGAT
Found at i:157721 original size:21 final size:21
Alignment explanation
Indices: 157535--157743 Score: 150
Period size: 21 Copynumber: 9.4 Consensus size: 21
157525 GCCCACACCT
* * *
157535 GAGCCTGAGCAGCCGAAGCCT
1 GAGCCCGAGCAGCCCAAGCCC
*
157556 GAGCCCGAGCAGCCCGAGCCCACACC
1 GAGCCCGAGCAGCCCAAG----C-CC
* * *
157582 TGAGCCTGAGCAGCCGAAGCCT
1 -GAGCCCGAGCAGCCCAAGCCC
157604 GAGCCCGAGCAGCCCGAGCCCACGCCC
1 GAGCCCGAGCAGCCC-A----A-GCCC
* *
157631 GAGCCTGAGCAGCCGAAGCCC
1 GAGCCCGAGCAGCCCAAGCCC
*
157652 GAGCCCGAGCAGCCCCAGCCC
1 GAGCCCGAGCAGCCCAAGCCC
* * *
157673 GAGCCTGAGCAGCCGAAGCCT
1 GAGCCCGAGCAGCCCAAGCCC
157694 GAGCCCGAGCAGCCCAAGCCC
1 GAGCCCGAGCAGCCCAAGCCC
* * *
157715 GAACCCGAGCAACCTCAA-CCG
1 GAGCCCGAGCAGCC-CAAGCCC
157736 GAGCCCGA
1 GAGCCCGA
157744 AGTTACCAAC
Statistics
Matches: 148, Mismatches: 27, Indels: 26
0.74 0.13 0.13
Matches are distributed among these distances:
21 106 0.72
22 6 0.04
23 1 0.01
25 1 0.01
26 3 0.02
27 31 0.21
ACGTcount: A:0.23, C:0.43, G:0.30, T:0.04
Consensus pattern (21 bp):
GAGCCCGAGCAGCCCAAGCCC
Left flanking sequence: Indices 157035 -- 157534
AGCCCACTACTGAATCTGAGGTCCCCTTGCCTTCCACGAGCGTGCCTGCTCCTGAACCCGAACCT
ACCACTGAATCCGAAGTGCCGTTGCCTTCTTCCAGTGAAACCGTGCCTGAGCCCGAACCTACCAC
TGTAACCGAGGTACCTTTGCCTTCTACCAGCGTGCCCGTGCCTGAGCCCGAGCCCACTACGGTGA
CCGAGGTGCCCTTGCCGTCGGAGAGTGTTCCTGTCCCCGAACCTGAACCCACTACCGAGACCGAG
GTTCCTTTGCCTTCCACCAGCGTGCCCGTGCCCGAGCCTGAGCCCACTACTGTGACAGAGGTGCC
CTTGCCCTCTGAAAGTGAGCCTGTCCCCGAACCCGAGCCCACTACCGAGGCCGAGGTCCCCTTGC
CTTCCACTAGTGCACATGTGCCTGAGCCTGAACCTACTACGAAGACTGAAGTGCCCTTACCTTCC
GAGAGTGTACCCGCCCCCGAGCCCGAGCAGCCCGAGCCCACACCT
Right flanking sequence: Indices 157744 -- 158243
AGTTACCAACACGTTAACGGTCACTATCCACCCTCCCATTGAGACTGAGCTCCCTCCCCCTGTGA
ACACCGTCCCCGAGGCCCCGGCTCCGGAGGTGCCAGAACAAACCGTTGTTCCTGGCGAACCGCCG
GTGAGCCCCGAGGTGCCACCCATGGAGGAAGCACCTGCTCCTGAGCCTGAACAGCCCACATTTGT
GCCGTCCGCTCCTGCTCCGAGCAACCCTGTGGAGATTCCCGAGTACACTGGTATGGCAAACATGA
AGTCGACCAACGTTTTGGTGGCTTTGGTGGCTATCTTCGCAATGGCGATTTAGTCAGTATACCCC
TAATTAGTTTGTTGTATAGATAGAAAAGTTCTGAATGATTTGTGTTATGAAAGACGTAAAGTGTG
TCGCAGAAGACTTCGAAACGCCTTGTTACTAGAGAATTTCGATTATGAACTTAAATGAAATCATA
CTCTTTTGGAACATACAATGACAACGCGATTGTACAGTTACTGTA
Found at i:158295 original size:16 final size:16
Alignment explanation
Indices: 158274--158305 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
158264 ATAAGTCTCC
158274 GCATTGAAATAGCTTT
1 GCATTGAAATAGCTTT
158290 GCATTGAAATAGCTTT
1 GCATTGAAATAGCTTT
158306 AACGCAATCA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.31, C:0.12, G:0.19, T:0.38
Consensus pattern (16 bp):
GCATTGAAATAGCTTT
Left flanking sequence: Indices 157774 -- 158273
CCCTCCCATTGAGACTGAGCTCCCTCCCCCTGTGAACACCGTCCCCGAGGCCCCGGCTCCGGAGG
TGCCAGAACAAACCGTTGTTCCTGGCGAACCGCCGGTGAGCCCCGAGGTGCCACCCATGGAGGAA
GCACCTGCTCCTGAGCCTGAACAGCCCACATTTGTGCCGTCCGCTCCTGCTCCGAGCAACCCTGT
GGAGATTCCCGAGTACACTGGTATGGCAAACATGAAGTCGACCAACGTTTTGGTGGCTTTGGTGG
CTATCTTCGCAATGGCGATTTAGTCAGTATACCCCTAATTAGTTTGTTGTATAGATAGAAAAGTT
CTGAATGATTTGTGTTATGAAAGACGTAAAGTGTGTCGCAGAAGACTTCGAAACGCCTTGTTACT
AGAGAATTTCGATTATGAACTTAAATGAAATCATACTCTTTTGGAACATACAATGACAACGCGAT
TGTACAGTTACTGTACCATCTTATTCTGTTCATAAATAAGTCTCC
Right flanking sequence: Indices 158306 -- 158805
AACGCAATCATCAAAGCAGTATGCGCATTTCCAGCGAGACTACTCTACGATTACGGAGATGCAGT
AGTGCTCTTCACGGTGAATTCGAATGTGATTGTCAGGTTCAAATGCAACCATTCTCTACAACCGG
CAACATTTGAAGCGCTGTGTGCCCAGTGTTGAGATGGCGGCAATTGAACGCTTAACAATGCTTAA
TGAGTCAATCTTATCGTATATAATTGCAGCGCAGAACGCAATTCGGCTGGGACCAGGCAGCATAC
ATGCAAACTTCACAAAGAACAAAATCACCTGGGCTGAGAAACACAATCCATATCATTCAATCTTG
TACTTTGCCAATTTTCAACTTTGGAGCCCTTCTGCCGATTGTAAATGTCCTACTAGCCAAATTTG
CTATGGCAGATGACGTAATCACACTCGATTTTTCATCTACTCATTAGACGGAAGTTGCCTAAGCG
TACAAGATGTCGGGCGAACTAGGATGCAATGGGTTTCCCGTGCTG
Found at i:166533 original size:30 final size:30
Alignment explanation
Indices: 166497--166571 Score: 141
Period size: 30 Copynumber: 2.5 Consensus size: 30
166487 ACCTTCTGTG
166497 GAGGCTTCCGAGGAGGTTGTGCCATCGGCT
1 GAGGCTTCCGAGGAGGTTGTGCCATCGGCT
166527 GAGGCTTCCGAGGAGGTTGTGCCATCGGCT
1 GAGGCTTCCGAGGAGGTTGTGCCATCGGCT
*
166557 GAGGCGTCCGAGGAG
1 GAGGCTTCCGAGGAG
166572 CCTGTCCCCT
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
30 44 1.00
ACGTcount: A:0.15, C:0.23, G:0.43, T:0.20
Consensus pattern (30 bp):
GAGGCTTCCGAGGAGGTTGTGCCATCGGCT
Left flanking sequence: Indices 165997 -- 166496
GGTTTGCCGACCCTATCTACCCCAACCTTGCTCCTTGTGCCCAGAAGTGCTTGGAGGACAACAAG
GACACCGGTAAGACTCCCTGCCCCTACTGGGACACTGGCTGTTTGTGCGTGATGCCCCAGTTTGC
CAACCCTATTGCCGACTGTATTGCTGCTCAGTGTGTCAACTCTGACGTCAAGCAGATGTCTGACG
CTGCCGTCAACGCCTGTTCTGCCGCTGGCGTGTGGGACCCTTTCTGGATGATCTCCGCGCCCCAG
AAGGAGGCTTTGGCCGCTGCTGCCGCTAAGCCTGCCACCACTACTTCCACTTCGGAGGCTCCCAC
TTCCACCTCTGCCGCTCCTGCTCCTACTTCGACCTCTGAGTCTCCCGTGGAGACTACTCCGGCCG
CCCCGGAAACTACCGAAGCTCCTGAGACCACCACGGCTCCCGAGCCCACCGCTAACGAGGTTGAC
ACTGGTGTTGTTGCTCCCGAGTCTGCTGAGCCTGAACCTTCTGTG
Right flanking sequence: Indices 166572 -- 167071
CCTGTCCCCTCTGCCGAGGCCTCCGCTGAGCCTTCTCAGGGGGCTTCTGCCGAAGAGTCTGCCAA
CGGCACCGTTGCCCCCGAGTCCACTTCCTCCGATAACGCTATCTCGTCTGCGATGGTTCCCCCTC
CCGCCGGTAACGTCACCGTTACTGAGGACAAGACCGTTACTGACATTGTCTTCTACTGCCCCGAG
ACCACCACCGTCACCTTGACCAAGTGTGACACCGTGTGCCAGCCCGTCGAGACCGTGTGCGAGCC
CGGTACCGTCACCGTGACTGGTACTTGTGTTGTTCCCGGTGACTACACTCCCGCCACCAAGGGCC
AGGAGACTGTCACCGTTGCCCCTCCCGCTCCTAAGCCCACCAAGGCTGCTCCTATTAAGGTTTCT
TCTGCCGAGGAGAAGCCCGCTCCTACTGTTGCCGGCGAGAACAAGCCTGCTCCTACCGTCGCTGA
TGTGACGAAGACCGCTGTTCCCACTGTTGCTCCTGAAATTGAGCA
Found at i:171116 original size:6 final size:6
Alignment explanation
Indices: 171105--171179 Score: 96
Period size: 6 Copynumber: 12.5 Consensus size: 6
171095 CCTGTCAAGT
* * *
171105 GAGGAA GAGGAA GAGCAA GAGGAA GAGCAA GAGGAA GAGCAA GAGGAA
1 GAGGAA GAGGAA GAGGAA GAGGAA GAGGAA GAGGAA GAGGAA GAGGAA
* * *
171153 GAGCAA GAGGAA GAGCAA GAAGAA GAG
1 GAGGAA GAGGAA GAGGAA GAGGAA GAG
171180 CAAGTTGAAG
Statistics
Matches: 57, Mismatches: 12, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
6 57 1.00
ACGTcount: A:0.51, C:0.07, G:0.43, T:0.00
Consensus pattern (6 bp):
GAGGAA
Left flanking sequence: Indices 170605 -- 171104
GTAACGGGCGCAACCGAGGCAACTGCGTGCTAACCACTGTGGTTGGTGCGATATTGCTATTGTCC
CTATTAGCCGCATGCTCCCGTCGGCTAACTTTACTCTTTGTCCCGATGTATATTGCCGCCATAGC
AAGACGACGCCCCCTACTGAGAACAAGTGGTACCATTTACCCCTAATGATGTTCACCACACGCAA
GATTCAAGGAGTACCACAATACGAAAAACAATAGACGGTTGTGTAAATGTAAATACCCGCATTGG
TATAGCCGCCCCGTCACGTGCGAAGATCATCGTTAGTAGTGTGAGGCAACGGTTACAATCATGGT
CGAGACAAAACGGGGAAAACGCATCGTGGTAAAGAACTCGATCCAGCATGCGAGGAACCAAACAC
AACATCAAACACTTAAGCGGAGAGTCGAGCCGGTGATCGAGCCCGTATCTGATCACAAGCGCTTG
AAGGCAAGCGAGAAGCCTGCGTTAATCCCGACCTACCTGTCAAGT
Right flanking sequence: Indices 171180 -- 171679
CAAGTTGAAGAAAAGGTGGACAAAGTCGACGAAACAGAGACTACACAGCCAAATAGCCCCACCAG
CGACGAGCGAAGCAAATATGATCATTCAGATGCATCTGAAGATGACGACGAAGCTGATTCATCAA
GCGACGAAGAGGATCTTGCAGCAATCCAGGCTGAACTCGAGAAAACTGAAGAACAGCGGAAGCTG
CTCAACAACGCGACCCAAGTGTCCACCACCCGCAAACGCTCATCATGGCGGGACACTCCGTACAC
ACGTCCCGAGACCAATGAGTCCCCTAAAGAAACCAACTACGACACAAGTGTGATCAACTCCGAAC
GACACAAGGAATTTCTTCGGAAGTATATCAGGTAACAGGCATTCGACCTAGAGGGAGCGGGTCCT
CCCATAGATTTATAGAGGCATAACATAAATTAGTCATAATCATTACAAACTGTTCAAAAGCTTAT
TGAACTGGGACTGGATGTCTTGCTCCGCCAGTTCAGCAAACACGA
Found at i:171190 original size:12 final size:12
Alignment explanation
Indices: 171109--171183 Score: 141
Period size: 12 Copynumber: 6.2 Consensus size: 12
171099 TCAAGTGAGG
171109 AAGAGGAAGAGC
1 AAGAGGAAGAGC
171121 AAGAGGAAGAGC
1 AAGAGGAAGAGC
171133 AAGAGGAAGAGC
1 AAGAGGAAGAGC
171145 AAGAGGAAGAGC
1 AAGAGGAAGAGC
171157 AAGAGGAAGAGC
1 AAGAGGAAGAGC
*
171169 AAGAAGAAGAGC
1 AAGAGGAAGAGC
171181 AAG
1 AAG
171184 TTGAAGAAAA
Statistics
Matches: 62, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
12 62 1.00
ACGTcount: A:0.52, C:0.08, G:0.40, T:0.00
Consensus pattern (12 bp):
AAGAGGAAGAGC
Left flanking sequence: Indices 170609 -- 171108
CGGGCGCAACCGAGGCAACTGCGTGCTAACCACTGTGGTTGGTGCGATATTGCTATTGTCCCTAT
TAGCCGCATGCTCCCGTCGGCTAACTTTACTCTTTGTCCCGATGTATATTGCCGCCATAGCAAGA
CGACGCCCCCTACTGAGAACAAGTGGTACCATTTACCCCTAATGATGTTCACCACACGCAAGATT
CAAGGAGTACCACAATACGAAAAACAATAGACGGTTGTGTAAATGTAAATACCCGCATTGGTATA
GCCGCCCCGTCACGTGCGAAGATCATCGTTAGTAGTGTGAGGCAACGGTTACAATCATGGTCGAG
ACAAAACGGGGAAAACGCATCGTGGTAAAGAACTCGATCCAGCATGCGAGGAACCAAACACAACA
TCAAACACTTAAGCGGAGAGTCGAGCCGGTGATCGAGCCCGTATCTGATCACAAGCGCTTGAAGG
CAAGCGAGAAGCCTGCGTTAATCCCGACCTACCTGTCAAGTGAGG
Right flanking sequence: Indices 171184 -- 171683
TTGAAGAAAAGGTGGACAAAGTCGACGAAACAGAGACTACACAGCCAAATAGCCCCACCAGCGAC
GAGCGAAGCAAATATGATCATTCAGATGCATCTGAAGATGACGACGAAGCTGATTCATCAAGCGA
CGAAGAGGATCTTGCAGCAATCCAGGCTGAACTCGAGAAAACTGAAGAACAGCGGAAGCTGCTCA
ACAACGCGACCCAAGTGTCCACCACCCGCAAACGCTCATCATGGCGGGACACTCCGTACACACGT
CCCGAGACCAATGAGTCCCCTAAAGAAACCAACTACGACACAAGTGTGATCAACTCCGAACGACA
CAAGGAATTTCTTCGGAAGTATATCAGGTAACAGGCATTCGACCTAGAGGGAGCGGGTCCTCCCA
TAGATTTATAGAGGCATAACATAAATTAGTCATAATCATTACAAACTGTTCAAAAGCTTATTGAA
CTGGGACTGGATGTCTTGCTCCGCCAGTTCAGCAAACACGAGTTT
Found at i:176164 original size:12 final size:12
Alignment explanation
Indices: 176149--176181 Score: 57
Period size: 12 Copynumber: 2.8 Consensus size: 12
176139 CGGTGCTGCC
176149 GCTGGTGCCGCT
1 GCTGGTGCCGCT
*
176161 GCTGGTGCCGTT
1 GCTGGTGCCGCT
176173 GCTGGTGCC
1 GCTGGTGCC
176182 ACCGGAGCTG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.00, C:0.30, G:0.42, T:0.27
Consensus pattern (12 bp):
GCTGGTGCCGCT
Left flanking sequence: Indices 175649 -- 176148
GACTGGACGTTGGGACTAACGGACCTACTGGAACCACGGGCAATACTGGTGCTACTGGCGCTACT
GGAACCCACGGCAAGACGACTGGCGCTACTGGTGCCACCGGCAATACTGCTGCTACTGGCGCCAC
CGGTGCTCAGGGTAAGGGCTCAGGTTCGCATGGAAAGACTGCTGCCGCCGGTGCTACTGCCGGTG
CTGCTGCTGGAACTGCCGCTGGCTCCAAGAATGCTAAGTCTGAGGAAAAGAAGGAGAAGTCTGGT
CGTCGTTTGTCCAACTTTTTTAGCAAGAAAGACAAGAAGAAGAACAAGGACACCTCCAAGGGCGA
AGTGGCCTCTCCTGACTCCAACCGTGACATCCAAAAGGGTGGTGGCGGCAACGTTGACCTCTCCA
ATTTGCAGTCGACCAAGGGTGTTGTGCATCAAGCTGGTCGTGGCCAGTACGATGTTGAGGGTCAC
CATCTTGACGACCACACTGCTCGTGTCAACAAAACCGGTGCTGCC
Right flanking sequence: Indices 176182 -- 176681
ACCGGAGCTGCTGTTCTCAGTAACAGAGGTGAAGGTCAGGGCCGCGTTGACGACCCTGCCGTGGG
CACCAGCGGTTCTGGTGTAGTGAAGAACGCGGTTAGTGGGTCTACTTTGGGTCAGCAACAAATCA
CGGGACACCGTGTTGATGAGCCTTCTACTGCTGGTGTTGGTACCGGTCGTGATGGTTACACTGAC
ACCAACGACCTTGGTGTCAGCGGCGAGGCTGTTAACCCTAAATTGGGTGGCCGCGATGCCAATGA
TGGCCGTGGCGGTATTGGTGGTGCTGGATTGAACCAAGGCAGCCGACACAATGATGCTGGATACC
ACGATGCTGATGCTGGCGTTGGTGGTGCTGGATACAACGCCTACGACAAGAGCCGGAGAAACACC
GAGCCTGAGACGTTTTACGACACCAACGACCATCCTGCGGAGGGCCAGTACAATGTTGCTGGTAC
CCCTGGGGACCGCAACGTTACTGACGTGAACGAAAACTACGAGAC
Found at i:227427 original size:13 final size:13
Alignment explanation
Indices: 227409--227437 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
227399 GGCTGCAAAC
227409 ATGGGGAAGGTGA
1 ATGGGGAAGGTGA
227422 ATGGGGAAGGTGA
1 ATGGGGAAGGTGA
227435 ATG
1 ATG
227438 AGAAGATACG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.31, C:0.00, G:0.52, T:0.17
Consensus pattern (13 bp):
ATGGGGAAGGTGA
Left flanking sequence: Indices 226909 -- 227408
GGAGAATATGCTTGAAACGAGCATCATACTTGGATCCCTGGGACTCCAATTCGCTGATCTCCCGT
CCTAATGTACGGTGCTTCTCAAGATCGATAGTTTTGGCCCGCAAGTCATCGTTGATATCCACCAA
TTGTCCCACCAATGTGTCAAGGCCGTCGTCGTCAAAGCTACCAACCTTGGCTGAGAGCTGTTTGA
GCGTAGACTCAAATTTAGCAATGTCCTCCACGATGGGAAGCTTTTGGAAGCCAGAGGGGGCCGGT
GGGGTACCCCCGACAAGCGCCAGCGCTGGACGGGGTCCCGCGGCGGCCTGCGGGTTCAACAGCAG
CAGAACATACCCTGCAGAAGGGGTGGGAGAGCGTGCCAACTGTGGTAGCCGCGTGGATGAGCCTA
CCCGAGACACCGGGACTGACTTGTCCTTCTTTGGGAGCATGGTATCTTAGTTGATGGTCGAGTGA
AAATACTGGGTATTGTACAGGAGGGTGTCGCGACTGGCTGCAAAC
Right flanking sequence: Indices 227438 -- 227937
AGAAGATACGGACAGGCGACCAGATGACCTGGTTGTGTTGGATTCAGGTTTTCTTGGTTTATATA
GTATTTGATAGTTGGCAAGCCCGGTTTTCAAGGCACTGTAAAGGAGATTCCGATTTTGAGTTTGA
GACGTCAGGACCACTCCCAGATACTGTGAACTTAGAAATTCGGAAGCGTTGATTCTTGTACAGAC
TGGGTTAATAGTTTAGCGGGTCTTTTCTGGTGGTGCTTTTGTTGGACACTGAAGTCTCTATTACG
AGATTGGGAAGCAGCAAAAAAGAACGGAAACGGCTCTGGAAGTATACTCTGCGCGTTCCATTGGG
TGAGACACATGGGAGCACAGCCTAGCAATAACTTGAAGGCACGTACCGAGGGATACCATTCTGCA
CTCCGGACGCAACAATAGAAAGCTTAATATAGTGACATACTAACATCACCGAACAGGATAGAATG
GACATCAGTTCGTAATTCAAGCAAATCGTTGGAATGCTACTTGCC
Found at i:236622 original size:12 final size:12
Alignment explanation
Indices: 236605--236636 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
236595 TGGTGCCATC
236605 GTTGGCGGTGTT
1 GTTGGCGGTGTT
236617 GTTGGCGGTGTT
1 GTTGGCGGTGTT
*
236629 GCTGGCGG
1 GTTGGCGG
236637 ATTCCTTTTG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.00, C:0.12, G:0.53, T:0.34
Consensus pattern (12 bp):
GTTGGCGGTGTT
Left flanking sequence: Indices 236105 -- 236604
GTCTGGTCAAGAATACAGATCAGTTCATGACCCCCTCGCTCTGTGCTGACATGTGCAAGGGCTCC
GCATACACTGCCATTCAGGACCAGAAATGCTACTGTTTGCTGCTGAAACCCAGCGGCAACGGCGG
CACTTGTGACACGGTTTGCCCCGGTTATGGCGATCTAAAATGCGGGGGCCAGTCTTCTTTCAGTA
TCTTCCAAATCGGCGAGGACGACGGTGCCACCGAGCCCCTGTCAAGCAAAGACGAGCCGTCTTCC
ACAAAACCTCTGACTCACGCGGAAAGCAAGACCTCTGCTCTGCCGACCAAGTCCGAAGTGGGGAC
CACTGTCACCGACTCCCCGTCCAAGCTGACCCAGACCGTCATCACCACTGCTGTCACCTCGGGTG
ACCTGGTGGTCACCATCTACCAAACTCTGAACGTGGCCCACCCGACGTCGCTGCTGCTGCTGAGC
TCCAAGGATGACGAACCTAAGAAGAAGAGCAACACTGGTGCCATC
Right flanking sequence: Indices 236637 -- 237136
ATTCCTTTTGGCTCTCGCTGCGTTCTTTTTCATCCGCTGGAGACGCAACCGAGACTACGATGAGG
ACGACGAGGAGTACGACTTTGGTCCCGAAAAGGGCACGTTTGACGCTGTGGGCATTGGTCGTGGC
AACACTGCCAAGGGCCTGAAGCGCTCCAGAGCCGGCCCTCTCGACATGCCGATGGCAAACCCGTT
TGACCACCCATCTGACCCGCGAACTACTGGCGGAGTCACCCCGAACTTGCCCCTGGACCCGCGCA
TGAACCCTGTGATGATGGGTCGTAGCCGGTTGTCAGAAGACCTGTTGGCAGATAACGCTGACTAC
TCGCGGAAGATTCTCCACGTAGCTAACCCCGATGGGCTATAGCCGAGTCGCGTGAACACGCGTAG
ACCGTGACATTTCCGGTTTTGAACCGGCTTGCTTTTTATGGGTTTTAGGGCAGGGCTAGGATACA
GCCCCTCATGAGACCATCACCGCTATTGAGGATACATATACAATT
Found at i:243753 original size:17 final size:17
Alignment explanation
Indices: 243731--243800 Score: 140
Period size: 17 Copynumber: 4.1 Consensus size: 17
243721 TTATAGTGAA
243731 TCAAAACAATCATCTAT
1 TCAAAACAATCATCTAT
243748 TCAAAACAATCATCTAT
1 TCAAAACAATCATCTAT
243765 TCAAAACAATCATCTAT
1 TCAAAACAATCATCTAT
243782 TCAAAACAATCATCTAT
1 TCAAAACAATCATCTAT
243799 TC
1 TC
243801 GTTACCTAAA
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 53 1.00
ACGTcount: A:0.46, C:0.24, G:0.00, T:0.30
Consensus pattern (17 bp):
TCAAAACAATCATCTAT
Left flanking sequence: Indices 243231 -- 243730
GCAATAAACAACATTAAGAAGAGAAGGGAACTTAACGCCAACAACGATCGTTGTTGAAGTTCTAG
CATTACAGATACCTGTAAAGGGATTATGACACATGAGAAGACCCAGGCGCAAGAAAGAGGCTCTA
AAAGAGACTCTAATTGACACTAAAAGAGACACTTTTGCTGACATACAACGTTCCATGTCAAGATT
AGCCGACATTCGCTTCAATTGCGGTCGCCAAATATGGAAAGTCTCCCGCCCTAGATGCGATAACC
TACATGACATTGCCATCCGCAAAACAGGAAACTCACGCCTCGCCCAACAAGTATAAATAACCATC
CAAGTTCCATATTCCCCATCATCTCAATCATGGCCGCTCAAAACACTCGCACTAACAACAAGGAT
GGCAAGGACAACTACGACCTTCCCATCCAGGTCCACAACTTCTGTGTCATCGGCTAACGCGGTTC
GCATTCACATGAAGTTTTTCCCCCGGCGGTTTTATTTATAGTGAA
Right flanking sequence: Indices 243801 -- 244300
GTTACCTAAAGTAGGGGGAGTACATGTTCCAGATCTTCTGCATCAACCGGAGCTTCGTCTCAACC
TTGAACCGCGCGTTGTTCAAGTCGTTGAGGTCGCCGACGTACTGCAGCCACAACGGCTTCGGAAT
CAACGGGCGCGAGATAATCATCAAATTGAGCACCTCCACCAACAAGTCGCCCTCGCAGAACTCGC
CGTCGCTGGTGCGCACCAAGTAGTTTTCAATGGCATTCAACAGCCGCAAGCACAACATCGTCACC
TGCTTGCCGTCGACCATCAACGGCTTGGCACGGAACATCCAGCCCCACAACTTGTACAAGGCGAA
GGCCAGCGGCAGCGCCGACACCACCCCAAACAACAACTGCTGCAGCTTAAGCAACTTGTCGATCC
CGGTGATGGCGAGCCCGCCGTCGACCTTCGTCTTTTGCAACTGGATCAACAAACTGCGCACAAGG
TCGCCCGACGCCAAGCTGCGGAGCGGGCGGCGGATCTCCTGCTCG
Found at i:245096 original size:21 final size:21
Alignment explanation
Indices: 245055--245098 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
245045 AGCGCGACCC
*
245055 GCCACACCCGGAGGGCAAACT
1 GCCACACCCGGACGGCAAACT
*
245076 GCCACACCCGTGCCGGC-AACT
1 GCCACACCCG-GACGGCAAACT
245097 GC
1 GC
245099 TGGATGTAGA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 16 0.80
22 4 0.20
ACGTcount: A:0.23, C:0.43, G:0.27, T:0.07
Consensus pattern (21 bp):
GCCACACCCGGACGGCAAACT
Left flanking sequence: Indices 244555 -- 245054
CCACGCCACGTAGTCGCGCCAGTTGGTGGTGACCTGCTCGGTGAGCCGTGGCCCGTACCAGAGCG
CAACGATGATCACCGGCCAGTACCGCAGCCACACCCGTGGGGGCGCTGTCCGCCAGAGCCGCTGC
GGCGCCAGCGACTCCGACGCGATGACGTCATCGATGATCTGCAACACCCGCTGGTTGGCGTTGGC
GGCCGGGTTGGTGATGCCGAGCGCCGCCTCCATCGCCACCACCACCGCGGGGGTGTGGGTGTAGT
CGTCGACCTTGACCAAGCCGTCGATGATCGCCAGGTTGGCCTCGATCTGGCCCTTGATGTCGGCG
ATGCGGGCGCCAATGTCGCTGGCGGCAATAGTGATCGGCATGCGGAAAGCCGCCTTCGTGCGGCG
CCAGGCCAGCTGGGGGCGGAGAATGGTGTCCACGGGGTTCAACCGCACCAAGTCCTGGTGCCACA
CGTTGCCCATGGTCTCCAACAACGAGTTGTACAGCAGCGCGACCC
Right flanking sequence: Indices 245099 -- 245598
TGGATGTAGAACACCAACCGGTTCATCGACGAGCCATTGACCCCCTCCCAGTACGCCAACTGCAG
CTTGAGCACAAGCGTGTTGTAGATGACGTTGTTGGAGTGCGCTGCCGCCGCCGCAAGCACCCCGT
AGGTGTCCACGGCCCTGCTCACGTCGCGCGGCGGCTCCGGGTGCTCGATAAAGACCGAGCGGAGC
TTTTGGAGGTTGGCCTCGGCTAGGGGAAACTCGTGGCTGTCGTCTCCGAGGCCCAAATCGTCGTA
CACCACGCGCAACACCGCCAAGTCCGACGGTTTTGCCGTTTCGTGGCTGGCGAGCACCAATTGCG
CGGTGGCGTCGTTGGCGGCGTCGAGCAGCGAGTCGATGCGGCGCGAGATCACGCTGTTGCGGGAT
ATCTCCCGCCACACCTGGTTCTGGGAGAGCCCCGCCTGGTAGAGCTTCATATCGTACGGTTGGTT
GCGGTGGGCGCGCTTATATAGGGGCCGGGCTCGTGTGCGGTGGGC
Found at i:245658 original size:14 final size:14
Alignment explanation
Indices: 245639--245673 Score: 70
Period size: 14 Copynumber: 2.5 Consensus size: 14
245629 CAGGGGTGTA
245639 GGCGGGGCGTAGGC
1 GGCGGGGCGTAGGC
245653 GGCGGGGCGTAGGC
1 GGCGGGGCGTAGGC
245667 GGCGGGG
1 GGCGGGG
245674 AGCATAGACG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.06, C:0.20, G:0.69, T:0.06
Consensus pattern (14 bp):
GGCGGGGCGTAGGC
Left flanking sequence: Indices 245139 -- 245638
CCCCCTCCCAGTACGCCAACTGCAGCTTGAGCACAAGCGTGTTGTAGATGACGTTGTTGGAGTGC
GCTGCCGCCGCCGCAAGCACCCCGTAGGTGTCCACGGCCCTGCTCACGTCGCGCGGCGGCTCCGG
GTGCTCGATAAAGACCGAGCGGAGCTTTTGGAGGTTGGCCTCGGCTAGGGGAAACTCGTGGCTGT
CGTCTCCGAGGCCCAAATCGTCGTACACCACGCGCAACACCGCCAAGTCCGACGGTTTTGCCGTT
TCGTGGCTGGCGAGCACCAATTGCGCGGTGGCGTCGTTGGCGGCGTCGAGCAGCGAGTCGATGCG
GCGCGAGATCACGCTGTTGCGGGATATCTCCCGCCACACCTGGTTCTGGGAGAGCCCCGCCTGGT
AGAGCTTCATATCGTACGGTTGGTTGCGGTGGGCGCGCTTATATAGGGGCCGGGCTCGTGTGCGG
TGGGCAGATCACGATGGGGCGATGGGAGGTGGCGGCAGGGGTGTA
Right flanking sequence: Indices 245674 -- 246173
AGCATAGACGGTGGGGAGCGTAAAGGGTAGGTAGCGTAGACGAGTGGGATGGGCGGTGTGTGATG
GTGAGGCTTGTTGAAGGCTGTGGTGTACGGAAATCGAGGACTGAGACAAAAATAGAGAGCATGAG
AAAACGGGAGACGAACGGGATGAACGGGATGAACCGGGTAATTGGCTCAATGGCAGTACGAGTGC
TGGAAGAGTGGTGTCAGCGGTAGAATCGAGTGGTCTACGATCACCTGTGCCTGGGACCCAGTCTA
TCTCTAGTCTATTTCTATTCGGTTACTAGTCTCAAACATGTAGTCAGAATCCCACGCTATAGCCA
TAAAAGCAACCAAAAGGATCCCAAAAAAGACACCACTACCCTCAGCACAACCCTCTTAACACCCC
CAACCCCACCACAGCCACTCACCACCCGCGCAAGGGCTCTACGTTGGGACCATGAATACCATATG
TTAGTGTCCTGCATATAACCTCGGAGTACCCCACGTCCGTTCGAA
Found at i:246191 original size:13 final size:13
Alignment explanation
Indices: 246173--246216 Score: 63
Period size: 13 Copynumber: 3.5 Consensus size: 13
246163 GTCCGTTCGA
*
246173 ATACCCCACGTTC
1 ATACCCCACGTCC
246186 ATACCCCACGTCC
1 ATACCCCACGTCC
*
246199 A-AACCCACGTCC
1 ATACCCCACGTCC
246211 ATACCC
1 ATACCC
246217 ACTTCCACAC
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
12 11 0.41
13 16 0.59
ACGTcount: A:0.27, C:0.50, G:0.07, T:0.16
Consensus pattern (13 bp):
ATACCCCACGTCC
Left flanking sequence: Indices 245673 -- 246172
GAGCATAGACGGTGGGGAGCGTAAAGGGTAGGTAGCGTAGACGAGTGGGATGGGCGGTGTGTGAT
GGTGAGGCTTGTTGAAGGCTGTGGTGTACGGAAATCGAGGACTGAGACAAAAATAGAGAGCATGA
GAAAACGGGAGACGAACGGGATGAACGGGATGAACCGGGTAATTGGCTCAATGGCAGTACGAGTG
CTGGAAGAGTGGTGTCAGCGGTAGAATCGAGTGGTCTACGATCACCTGTGCCTGGGACCCAGTCT
ATCTCTAGTCTATTTCTATTCGGTTACTAGTCTCAAACATGTAGTCAGAATCCCACGCTATAGCC
ATAAAAGCAACCAAAAGGATCCCAAAAAAGACACCACTACCCTCAGCACAACCCTCTTAACACCC
CCAACCCCACCACAGCCACTCACCACCCGCGCAAGGGCTCTACGTTGGGACCATGAATACCATAT
GTTAGTGTCCTGCATATAACCTCGGAGTACCCCACGTCCGTTCGA
Right flanking sequence: Indices 246217 -- 246716
ACTTCCACACGAAAACTACGTCCTGTAAGAGTACCACGCCCATACTTCTTCCCTACTTCTTCCCC
TACTTCTATGCAATGTATTACCGGAGGTCGCTATTTATCTGGCTCTCGTGGTGGATGCGCTTGTT
CAAGTTCTCGATGTCCTCCTTGAGCGACGCCTCCTCCACCGTCTTCACAAGCTCCTTGGTGCACT
TGGCAATGTCAAACGAGATCCCCGCCAACCGCTGCTTGAAGTTCTTGTCGGCGTAGTCGGCGTCG
GTCTTGTCGGCCAGCGGCTTGCACAACACCTTCATCCGGGTCTCGCAGTCCTCGAGCGACCGCAC
CACCCACAGCCCGTGCTCCTTGAGCAGCGCGTTGCGCGTCTGGTTCATCAGGGTGTTGGTGGCCT
CGGTCATCTGCGAGATCACCTCGGCGATTGCCTGCGAGTTCTGCCGCAACTCGCCGCGGGTGGCG
TCGGGCTTCTTGATCGCCAGCAACAACAGCTGGATCGTCAGGATC
Found at i:246207 original size:12 final size:12
Alignment explanation
Indices: 246190--246223 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
246180 ACGTTCATAC
246190 CCCACGTCCAAA
1 CCCACGTCCAAA
*
246202 CCCACGTCCATA
1 CCCACGTCCAAA
*
246214 CCCACTTCCA
1 CCCACGTCCA
246224 CACGAAAACT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.26, C:0.53, G:0.06, T:0.15
Consensus pattern (12 bp):
CCCACGTCCAAA
Left flanking sequence: Indices 245690 -- 246189
AGCGTAAAGGGTAGGTAGCGTAGACGAGTGGGATGGGCGGTGTGTGATGGTGAGGCTTGTTGAAG
GCTGTGGTGTACGGAAATCGAGGACTGAGACAAAAATAGAGAGCATGAGAAAACGGGAGACGAAC
GGGATGAACGGGATGAACCGGGTAATTGGCTCAATGGCAGTACGAGTGCTGGAAGAGTGGTGTCA
GCGGTAGAATCGAGTGGTCTACGATCACCTGTGCCTGGGACCCAGTCTATCTCTAGTCTATTTCT
ATTCGGTTACTAGTCTCAAACATGTAGTCAGAATCCCACGCTATAGCCATAAAAGCAACCAAAAG
GATCCCAAAAAAGACACCACTACCCTCAGCACAACCCTCTTAACACCCCCAACCCCACCACAGCC
ACTCACCACCCGCGCAAGGGCTCTACGTTGGGACCATGAATACCATATGTTAGTGTCCTGCATAT
AACCTCGGAGTACCCCACGTCCGTTCGAATACCCCACGTTCATAC
Right flanking sequence: Indices 246224 -- 246723
CACGAAAACTACGTCCTGTAAGAGTACCACGCCCATACTTCTTCCCTACTTCTTCCCCTACTTCT
ATGCAATGTATTACCGGAGGTCGCTATTTATCTGGCTCTCGTGGTGGATGCGCTTGTTCAAGTTC
TCGATGTCCTCCTTGAGCGACGCCTCCTCCACCGTCTTCACAAGCTCCTTGGTGCACTTGGCAAT
GTCAAACGAGATCCCCGCCAACCGCTGCTTGAAGTTCTTGTCGGCGTAGTCGGCGTCGGTCTTGT
CGGCCAGCGGCTTGCACAACACCTTCATCCGGGTCTCGCAGTCCTCGAGCGACCGCACCACCCAC
AGCCCGTGCTCCTTGAGCAGCGCGTTGCGCGTCTGGTTCATCAGGGTGTTGGTGGCCTCGGTCAT
CTGCGAGATCACCTCGGCGATTGCCTGCGAGTTCTGCCGCAACTCGCCGCGGGTGGCGTCGGGCT
TCTTGATCGCCAGCAACAACAGCTGGATCGTCAGGATCACCTGGT
Found at i:246275 original size:11 final size:12
Alignment explanation
Indices: 246259--246288 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
246249 ACCACGCCCA
246259 TACTTCTT-CCC
1 TACTTCTTCCCC
246270 TACTTCTTCCCC
1 TACTTCTTCCCC
246282 TACTTCT
1 TACTTCT
246289 ATGCAATGTA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 8 0.44
12 10 0.56
ACGTcount: A:0.10, C:0.43, G:0.00, T:0.47
Consensus pattern (12 bp):
TACTTCTTCCCC
Left flanking sequence: Indices 245759 -- 246258
TGGTGTACGGAAATCGAGGACTGAGACAAAAATAGAGAGCATGAGAAAACGGGAGACGAACGGGA
TGAACGGGATGAACCGGGTAATTGGCTCAATGGCAGTACGAGTGCTGGAAGAGTGGTGTCAGCGG
TAGAATCGAGTGGTCTACGATCACCTGTGCCTGGGACCCAGTCTATCTCTAGTCTATTTCTATTC
GGTTACTAGTCTCAAACATGTAGTCAGAATCCCACGCTATAGCCATAAAAGCAACCAAAAGGATC
CCAAAAAAGACACCACTACCCTCAGCACAACCCTCTTAACACCCCCAACCCCACCACAGCCACTC
ACCACCCGCGCAAGGGCTCTACGTTGGGACCATGAATACCATATGTTAGTGTCCTGCATATAACC
TCGGAGTACCCCACGTCCGTTCGAATACCCCACGTTCATACCCCACGTCCAAACCCACGTCCATA
CCCACTTCCACACGAAAACTACGTCCTGTAAGAGTACCACGCCCA
Right flanking sequence: Indices 246289 -- 246788
ATGCAATGTATTACCGGAGGTCGCTATTTATCTGGCTCTCGTGGTGGATGCGCTTGTTCAAGTTC
TCGATGTCCTCCTTGAGCGACGCCTCCTCCACCGTCTTCACAAGCTCCTTGGTGCACTTGGCAAT
GTCAAACGAGATCCCCGCCAACCGCTGCTTGAAGTTCTTGTCGGCGTAGTCGGCGTCGGTCTTGT
CGGCCAGCGGCTTGCACAACACCTTCATCCGGGTCTCGCAGTCCTCGAGCGACCGCACCACCCAC
AGCCCGTGCTCCTTGAGCAGCGCGTTGCGCGTCTGGTTCATCAGGGTGTTGGTGGCCTCGGTCAT
CTGCGAGATCACCTCGGCGATTGCCTGCGAGTTCTGCCGCAACTCGCCGCGGGTGGCGTCGGGCT
TCTTGATCGCCAGCAACAACAGCTGGATCGTCAGGATCACCTGGTCGGTGTGGTGCTCCAAGTAC
AACAACACCTGCGTCAACGTGTTGTCGGGGTTTTCGATGTCGAAG
Found at i:246876 original size:9 final size:9
Alignment explanation
Indices: 246864--246889 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
246854 CATCTCGTCC
246864 TCCAGCTCG
1 TCCAGCTCG
246873 TCCAGCTCG
1 TCCAGCTCG
246882 TCCAGCTC
1 TCCAGCTC
246890 CTCGTCCAGC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.12, C:0.46, G:0.19, T:0.23
Consensus pattern (9 bp):
TCCAGCTCG
Left flanking sequence: Indices 246364 -- 246863
CCTTGAGCGACGCCTCCTCCACCGTCTTCACAAGCTCCTTGGTGCACTTGGCAATGTCAAACGAG
ATCCCCGCCAACCGCTGCTTGAAGTTCTTGTCGGCGTAGTCGGCGTCGGTCTTGTCGGCCAGCGG
CTTGCACAACACCTTCATCCGGGTCTCGCAGTCCTCGAGCGACCGCACCACCCACAGCCCGTGCT
CCTTGAGCAGCGCGTTGCGCGTCTGGTTCATCAGGGTGTTGGTGGCCTCGGTCATCTGCGAGATC
ACCTCGGCGATTGCCTGCGAGTTCTGCCGCAACTCGCCGCGGGTGGCGTCGGGCTTCTTGATCGC
CAGCAACAACAGCTGGATCGTCAGGATCACCTGGTCGGTGTGGTGCTCCAAGTACAACAACACCT
GCGTCAACGTGTTGTCGGGGTTTTCGATGTCGAAGTCGTCGATGTTGAACGTGGCTGCGGCCATC
GACTTGCGGTACTCCTGTCGCTGGCGCGCGCTGTCCATCTCGTCC
Right flanking sequence: Indices 246890 -- 247389
CTCGTCCAGCTCCTCCTCGGACTCCTCCTCCTCCAGCTCCTCCTCGGACTCCTCCTCCTCCAGTT
CGTCCTCGGACTCGTCCAGCTCGTCCTCCAGCTCCTCTTCCAGGGTAGTGGCGGCGTCGATCTGG
ACCCGTTTCTGCACCTTGGGCGACAGCGTGGCGGCTGCCAGCTTGAGGATGGGCAGCGCGCGCGG
CGAGCTCTGCGAGAGCTTGCGGGTGGCCTCCTGGGCGGCGCGGCCGAGCCTGGGCGACGTGGTGG
ACGCAGCAGCGTGGGCCACGGCGTCTGCGCGTGCTGCTCTCGCGGCCTCCTTGGCCTGGACGTCG
CGGGCTCGCTGCTCGCGCTCCTCGCGGGCACGTTCTTCGCGGGCTCGCTCCTCACGGGCCTGCTC
TTCGCGGAGCCGGGCCTTGCGGGCCGCGCTCTCCTTGCGCATGAGCCGGGCCTGCTCCGCGTCGC
GCTCAGCCTGCTCGGCCTCACGGGCCTCACGGGCCTCACGGGCCT
Found at i:246881 original size:21 final size:21
Alignment explanation
Indices: 246851--246907 Score: 60
Period size: 21 Copynumber: 2.7 Consensus size: 21
246841 GGCGCGCGCT
* *
246851 GTCCATCTCGTCCTCCAGCTC
1 GTCCAGCTCGTCCTCCACCTC
** *
246872 GTCCAGCTCGTCCAGCTCCTC
1 GTCCAGCTCGTCCTCCACCTC
*
246893 GTCCAGCTCCTCCTC
1 GTCCAGCTCGTCCTC
246908 GGACTCCTCC
Statistics
Matches: 28, Mismatches: 8, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.09, C:0.49, G:0.16, T:0.26
Consensus pattern (21 bp):
GTCCAGCTCGTCCTCCACCTC
Left flanking sequence: Indices 246351 -- 246850
TTCTCGATGTCCTCCTTGAGCGACGCCTCCTCCACCGTCTTCACAAGCTCCTTGGTGCACTTGGC
AATGTCAAACGAGATCCCCGCCAACCGCTGCTTGAAGTTCTTGTCGGCGTAGTCGGCGTCGGTCT
TGTCGGCCAGCGGCTTGCACAACACCTTCATCCGGGTCTCGCAGTCCTCGAGCGACCGCACCACC
CACAGCCCGTGCTCCTTGAGCAGCGCGTTGCGCGTCTGGTTCATCAGGGTGTTGGTGGCCTCGGT
CATCTGCGAGATCACCTCGGCGATTGCCTGCGAGTTCTGCCGCAACTCGCCGCGGGTGGCGTCGG
GCTTCTTGATCGCCAGCAACAACAGCTGGATCGTCAGGATCACCTGGTCGGTGTGGTGCTCCAAG
TACAACAACACCTGCGTCAACGTGTTGTCGGGGTTTTCGATGTCGAAGTCGTCGATGTTGAACGT
GGCTGCGGCCATCGACTTGCGGTACTCCTGTCGCTGGCGCGCGCT
Right flanking sequence: Indices 246908 -- 247407
GGACTCCTCCTCCTCCAGCTCCTCCTCGGACTCCTCCTCCTCCAGTTCGTCCTCGGACTCGTCCA
GCTCGTCCTCCAGCTCCTCTTCCAGGGTAGTGGCGGCGTCGATCTGGACCCGTTTCTGCACCTTG
GGCGACAGCGTGGCGGCTGCCAGCTTGAGGATGGGCAGCGCGCGCGGCGAGCTCTGCGAGAGCTT
GCGGGTGGCCTCCTGGGCGGCGCGGCCGAGCCTGGGCGACGTGGTGGACGCAGCAGCGTGGGCCA
CGGCGTCTGCGCGTGCTGCTCTCGCGGCCTCCTTGGCCTGGACGTCGCGGGCTCGCTGCTCGCGC
TCCTCGCGGGCACGTTCTTCGCGGGCTCGCTCCTCACGGGCCTGCTCTTCGCGGAGCCGGGCCTT
GCGGGCCGCGCTCTCCTTGCGCATGAGCCGGGCCTGCTCCGCGTCGCGCTCAGCCTGCTCGGCCT
CACGGGCCTCACGGGCCTCACGGGCCTCACGGGCCTTTTGCTCAC
Found at i:246893 original size:12 final size:12
Alignment explanation
Indices: 246878--246904 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
246868 GCTCGTCCAG
246878 CTCGTCCAGCTC
1 CTCGTCCAGCTC
246890 CTCGTCCAGCTC
1 CTCGTCCAGCTC
246902 CTC
1 CTC
246905 CTCGGACTCC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.07, C:0.52, G:0.15, T:0.26
Consensus pattern (12 bp):
CTCGTCCAGCTC
Left flanking sequence: Indices 246378 -- 246877
TCCTCCACCGTCTTCACAAGCTCCTTGGTGCACTTGGCAATGTCAAACGAGATCCCCGCCAACCG
CTGCTTGAAGTTCTTGTCGGCGTAGTCGGCGTCGGTCTTGTCGGCCAGCGGCTTGCACAACACCT
TCATCCGGGTCTCGCAGTCCTCGAGCGACCGCACCACCCACAGCCCGTGCTCCTTGAGCAGCGCG
TTGCGCGTCTGGTTCATCAGGGTGTTGGTGGCCTCGGTCATCTGCGAGATCACCTCGGCGATTGC
CTGCGAGTTCTGCCGCAACTCGCCGCGGGTGGCGTCGGGCTTCTTGATCGCCAGCAACAACAGCT
GGATCGTCAGGATCACCTGGTCGGTGTGGTGCTCCAAGTACAACAACACCTGCGTCAACGTGTTG
TCGGGGTTTTCGATGTCGAAGTCGTCGATGTTGAACGTGGCTGCGGCCATCGACTTGCGGTACTC
CTGTCGCTGGCGCGCGCTGTCCATCTCGTCCTCCAGCTCGTCCAG
Right flanking sequence: Indices 246905 -- 247404
CTCGGACTCCTCCTCCTCCAGCTCCTCCTCGGACTCCTCCTCCTCCAGTTCGTCCTCGGACTCGT
CCAGCTCGTCCTCCAGCTCCTCTTCCAGGGTAGTGGCGGCGTCGATCTGGACCCGTTTCTGCACC
TTGGGCGACAGCGTGGCGGCTGCCAGCTTGAGGATGGGCAGCGCGCGCGGCGAGCTCTGCGAGAG
CTTGCGGGTGGCCTCCTGGGCGGCGCGGCCGAGCCTGGGCGACGTGGTGGACGCAGCAGCGTGGG
CCACGGCGTCTGCGCGTGCTGCTCTCGCGGCCTCCTTGGCCTGGACGTCGCGGGCTCGCTGCTCG
CGCTCCTCGCGGGCACGTTCTTCGCGGGCTCGCTCCTCACGGGCCTGCTCTTCGCGGAGCCGGGC
CTTGCGGGCCGCGCTCTCCTTGCGCATGAGCCGGGCCTGCTCCGCGTCGCGCTCAGCCTGCTCGG
CCTCACGGGCCTCACGGGCCTCACGGGCCTCACGGGCCTTTTGCT
Found at i:246907 original size:15 final size:15
Alignment explanation
Indices: 246887--246935 Score: 59
Period size: 15 Copynumber: 3.5 Consensus size: 15
246877 GCTCGTCCAG
246887 CTCCTCGTCCAGCTC
1 CTCCTCGTCCAGCTC
*
246902 CTCCTCG--GA-CTC
1 CTCCTCGTCCAGCTC
*
246914 CTCCTCCTCCAGCTC
1 CTCCTCGTCCAGCTC
246929 CTCCTCG
1 CTCCTCG
246936 GACTCCTCCT
Statistics
Matches: 27, Mismatches: 4, Indels: 6
0.73 0.11 0.16
Matches are distributed among these distances:
12 9 0.33
13 1 0.04
14 1 0.04
15 16 0.59
ACGTcount: A:0.06, C:0.55, G:0.12, T:0.27
Consensus pattern (15 bp):
CTCCTCGTCCAGCTC
Left flanking sequence: Indices 246387 -- 246886
GTCTTCACAAGCTCCTTGGTGCACTTGGCAATGTCAAACGAGATCCCCGCCAACCGCTGCTTGAA
GTTCTTGTCGGCGTAGTCGGCGTCGGTCTTGTCGGCCAGCGGCTTGCACAACACCTTCATCCGGG
TCTCGCAGTCCTCGAGCGACCGCACCACCCACAGCCCGTGCTCCTTGAGCAGCGCGTTGCGCGTC
TGGTTCATCAGGGTGTTGGTGGCCTCGGTCATCTGCGAGATCACCTCGGCGATTGCCTGCGAGTT
CTGCCGCAACTCGCCGCGGGTGGCGTCGGGCTTCTTGATCGCCAGCAACAACAGCTGGATCGTCA
GGATCACCTGGTCGGTGTGGTGCTCCAAGTACAACAACACCTGCGTCAACGTGTTGTCGGGGTTT
TCGATGTCGAAGTCGTCGATGTTGAACGTGGCTGCGGCCATCGACTTGCGGTACTCCTGTCGCTG
GCGCGCGCTGTCCATCTCGTCCTCCAGCTCGTCCAGCTCGTCCAG
Right flanking sequence: Indices 246936 -- 247435
GACTCCTCCTCCTCCAGTTCGTCCTCGGACTCGTCCAGCTCGTCCTCCAGCTCCTCTTCCAGGGT
AGTGGCGGCGTCGATCTGGACCCGTTTCTGCACCTTGGGCGACAGCGTGGCGGCTGCCAGCTTGA
GGATGGGCAGCGCGCGCGGCGAGCTCTGCGAGAGCTTGCGGGTGGCCTCCTGGGCGGCGCGGCCG
AGCCTGGGCGACGTGGTGGACGCAGCAGCGTGGGCCACGGCGTCTGCGCGTGCTGCTCTCGCGGC
CTCCTTGGCCTGGACGTCGCGGGCTCGCTGCTCGCGCTCCTCGCGGGCACGTTCTTCGCGGGCTC
GCTCCTCACGGGCCTGCTCTTCGCGGAGCCGGGCCTTGCGGGCCGCGCTCTCCTTGCGCATGAGC
CGGGCCTGCTCCGCGTCGCGCTCAGCCTGCTCGGCCTCACGGGCCTCACGGGCCTCACGGGCCTC
ACGGGCCTTTTGCTCACGAGCCTCAGCCTGGGCCTTCTCACGAGC
Found at i:246914 original size:12 final size:12
Alignment explanation
Indices: 246899--246946 Score: 51
Period size: 12 Copynumber: 3.8 Consensus size: 12
246889 CCTCGTCCAG
246899 CTCCTCCTCGGA
1 CTCCTCCTCGGA
**
246911 CTCCTCCTCCTCCA
1 CTCCTCCT-C-GGA
246925 GCTCCTCCTCGGA
1 -CTCCTCCTCGGA
246938 CTCCTCCTC
1 CTCCTCCTC
246947 CTCCAGTTCG
Statistics
Matches: 29, Mismatches: 4, Indels: 6
0.74 0.10 0.15
Matches are distributed among these distances:
12 17 0.59
13 2 0.07
14 2 0.07
15 8 0.28
ACGTcount: A:0.06, C:0.56, G:0.10, T:0.27
Consensus pattern (12 bp):
CTCCTCCTCGGA
Left flanking sequence: Indices 246399 -- 246898
TCCTTGGTGCACTTGGCAATGTCAAACGAGATCCCCGCCAACCGCTGCTTGAAGTTCTTGTCGGC
GTAGTCGGCGTCGGTCTTGTCGGCCAGCGGCTTGCACAACACCTTCATCCGGGTCTCGCAGTCCT
CGAGCGACCGCACCACCCACAGCCCGTGCTCCTTGAGCAGCGCGTTGCGCGTCTGGTTCATCAGG
GTGTTGGTGGCCTCGGTCATCTGCGAGATCACCTCGGCGATTGCCTGCGAGTTCTGCCGCAACTC
GCCGCGGGTGGCGTCGGGCTTCTTGATCGCCAGCAACAACAGCTGGATCGTCAGGATCACCTGGT
CGGTGTGGTGCTCCAAGTACAACAACACCTGCGTCAACGTGTTGTCGGGGTTTTCGATGTCGAAG
TCGTCGATGTTGAACGTGGCTGCGGCCATCGACTTGCGGTACTCCTGTCGCTGGCGCGCGCTGTC
CATCTCGTCCTCCAGCTCGTCCAGCTCGTCCAGCTCCTCGTCCAG
Right flanking sequence: Indices 246947 -- 247446
CTCCAGTTCGTCCTCGGACTCGTCCAGCTCGTCCTCCAGCTCCTCTTCCAGGGTAGTGGCGGCGT
CGATCTGGACCCGTTTCTGCACCTTGGGCGACAGCGTGGCGGCTGCCAGCTTGAGGATGGGCAGC
GCGCGCGGCGAGCTCTGCGAGAGCTTGCGGGTGGCCTCCTGGGCGGCGCGGCCGAGCCTGGGCGA
CGTGGTGGACGCAGCAGCGTGGGCCACGGCGTCTGCGCGTGCTGCTCTCGCGGCCTCCTTGGCCT
GGACGTCGCGGGCTCGCTGCTCGCGCTCCTCGCGGGCACGTTCTTCGCGGGCTCGCTCCTCACGG
GCCTGCTCTTCGCGGAGCCGGGCCTTGCGGGCCGCGCTCTCCTTGCGCATGAGCCGGGCCTGCTC
CGCGTCGCGCTCAGCCTGCTCGGCCTCACGGGCCTCACGGGCCTCACGGGCCTCACGGGCCTTTT
GCTCACGAGCCTCAGCCTGGGCCTTCTCACGAGCCTCAGCTTCAG
Found at i:246944 original size:15 final size:15
Alignment explanation
Indices: 246899--246949 Score: 63
Period size: 15 Copynumber: 3.6 Consensus size: 15
246889 CCTCGTCCAG
246899 CTCCTCCTCGGACTC
1 CTCCTCCTCGGACTC
**
246914 CTCCTCCTC---CAG
1 CTCCTCCTCGGACTC
246926 CTCCTCCTCGGACTC
1 CTCCTCCTCGGACTC
246941 CTCCTCCTC
1 CTCCTCCTC
246950 CAGTTCGTCC
Statistics
Matches: 29, Mismatches: 4, Indels: 6
0.74 0.10 0.15
Matches are distributed among these distances:
12 10 0.34
15 19 0.66
ACGTcount: A:0.06, C:0.57, G:0.10, T:0.27
Consensus pattern (15 bp):
CTCCTCCTCGGACTC
Left flanking sequence: Indices 246399 -- 246898
TCCTTGGTGCACTTGGCAATGTCAAACGAGATCCCCGCCAACCGCTGCTTGAAGTTCTTGTCGGC
GTAGTCGGCGTCGGTCTTGTCGGCCAGCGGCTTGCACAACACCTTCATCCGGGTCTCGCAGTCCT
CGAGCGACCGCACCACCCACAGCCCGTGCTCCTTGAGCAGCGCGTTGCGCGTCTGGTTCATCAGG
GTGTTGGTGGCCTCGGTCATCTGCGAGATCACCTCGGCGATTGCCTGCGAGTTCTGCCGCAACTC
GCCGCGGGTGGCGTCGGGCTTCTTGATCGCCAGCAACAACAGCTGGATCGTCAGGATCACCTGGT
CGGTGTGGTGCTCCAAGTACAACAACACCTGCGTCAACGTGTTGTCGGGGTTTTCGATGTCGAAG
TCGTCGATGTTGAACGTGGCTGCGGCCATCGACTTGCGGTACTCCTGTCGCTGGCGCGCGCTGTC
CATCTCGTCCTCCAGCTCGTCCAGCTCGTCCAGCTCCTCGTCCAG
Right flanking sequence: Indices 246950 -- 247449
CAGTTCGTCCTCGGACTCGTCCAGCTCGTCCTCCAGCTCCTCTTCCAGGGTAGTGGCGGCGTCGA
TCTGGACCCGTTTCTGCACCTTGGGCGACAGCGTGGCGGCTGCCAGCTTGAGGATGGGCAGCGCG
CGCGGCGAGCTCTGCGAGAGCTTGCGGGTGGCCTCCTGGGCGGCGCGGCCGAGCCTGGGCGACGT
GGTGGACGCAGCAGCGTGGGCCACGGCGTCTGCGCGTGCTGCTCTCGCGGCCTCCTTGGCCTGGA
CGTCGCGGGCTCGCTGCTCGCGCTCCTCGCGGGCACGTTCTTCGCGGGCTCGCTCCTCACGGGCC
TGCTCTTCGCGGAGCCGGGCCTTGCGGGCCGCGCTCTCCTTGCGCATGAGCCGGGCCTGCTCCGC
GTCGCGCTCAGCCTGCTCGGCCTCACGGGCCTCACGGGCCTCACGGGCCTCACGGGCCTTTTGCT
CACGAGCCTCAGCCTGGGCCTTCTCACGAGCCTCAGCTTCAGCCT
Found at i:246966 original size:27 final size:27
Alignment explanation
Indices: 246887--246967 Score: 135
Period size: 27 Copynumber: 3.0 Consensus size: 27
246877 GCTCGTCCAG
*
246887 CTCCTCGTCCAGCTCCTCCTCGGACTC
1 CTCCTCCTCCAGCTCCTCCTCGGACTC
246914 CTCCTCCTCCAGCTCCTCCTCGGACTC
1 CTCCTCCTCCAGCTCCTCCTCGGACTC
* *
246941 CTCCTCCTCCAGTTCGTCCTCGGACTC
1 CTCCTCCTCCAGCTCCTCCTCGGACTC
246968 GTCCAGCTCG
Statistics
Matches: 51, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 51 1.00
ACGTcount: A:0.07, C:0.52, G:0.14, T:0.27
Consensus pattern (27 bp):
CTCCTCCTCCAGCTCCTCCTCGGACTC
Left flanking sequence: Indices 246387 -- 246886
GTCTTCACAAGCTCCTTGGTGCACTTGGCAATGTCAAACGAGATCCCCGCCAACCGCTGCTTGAA
GTTCTTGTCGGCGTAGTCGGCGTCGGTCTTGTCGGCCAGCGGCTTGCACAACACCTTCATCCGGG
TCTCGCAGTCCTCGAGCGACCGCACCACCCACAGCCCGTGCTCCTTGAGCAGCGCGTTGCGCGTC
TGGTTCATCAGGGTGTTGGTGGCCTCGGTCATCTGCGAGATCACCTCGGCGATTGCCTGCGAGTT
CTGCCGCAACTCGCCGCGGGTGGCGTCGGGCTTCTTGATCGCCAGCAACAACAGCTGGATCGTCA
GGATCACCTGGTCGGTGTGGTGCTCCAAGTACAACAACACCTGCGTCAACGTGTTGTCGGGGTTT
TCGATGTCGAAGTCGTCGATGTTGAACGTGGCTGCGGCCATCGACTTGCGGTACTCCTGTCGCTG
GCGCGCGCTGTCCATCTCGTCCTCCAGCTCGTCCAGCTCGTCCAG
Right flanking sequence: Indices 246968 -- 247467
GTCCAGCTCGTCCTCCAGCTCCTCTTCCAGGGTAGTGGCGGCGTCGATCTGGACCCGTTTCTGCA
CCTTGGGCGACAGCGTGGCGGCTGCCAGCTTGAGGATGGGCAGCGCGCGCGGCGAGCTCTGCGAG
AGCTTGCGGGTGGCCTCCTGGGCGGCGCGGCCGAGCCTGGGCGACGTGGTGGACGCAGCAGCGTG
GGCCACGGCGTCTGCGCGTGCTGCTCTCGCGGCCTCCTTGGCCTGGACGTCGCGGGCTCGCTGCT
CGCGCTCCTCGCGGGCACGTTCTTCGCGGGCTCGCTCCTCACGGGCCTGCTCTTCGCGGAGCCGG
GCCTTGCGGGCCGCGCTCTCCTTGCGCATGAGCCGGGCCTGCTCCGCGTCGCGCTCAGCCTGCTC
GGCCTCACGGGCCTCACGGGCCTCACGGGCCTCACGGGCCTTTTGCTCACGAGCCTCAGCCTGGG
CCTTCTCACGAGCCTCAGCTTCAGCCTCGGCTTTAGCCTCGGCCT
Found at i:247265 original size:30 final size:30
Alignment explanation
Indices: 247230--247286 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
247220 TCGCTGCTCG
* *
247230 CGCTCCTCGCGGGCAC-GTTCTTCGCGGGCT
1 CGCTCCTCACGGGC-CTGCTCTTCGCGGGCT
247260 CGCTCCTCACGGGCCTGCTCTTCGCGG
1 CGCTCCTCACGGGCCTGCTCTTCGCGG
247287 AGCCGGGCCT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 1 0.04
30 23 0.96
ACGTcount: A:0.04, C:0.42, G:0.32, T:0.23
Consensus pattern (30 bp):
CGCTCCTCACGGGCCTGCTCTTCGCGGGCT
Left flanking sequence: Indices 246730 -- 247229
GGTGCTCCAAGTACAACAACACCTGCGTCAACGTGTTGTCGGGGTTTTCGATGTCGAAGTCGTCG
ATGTTGAACGTGGCTGCGGCCATCGACTTGCGGTACTCCTGTCGCTGGCGCGCGCTGTCCATCTC
GTCCTCCAGCTCGTCCAGCTCGTCCAGCTCCTCGTCCAGCTCCTCCTCGGACTCCTCCTCCTCCA
GCTCCTCCTCGGACTCCTCCTCCTCCAGTTCGTCCTCGGACTCGTCCAGCTCGTCCTCCAGCTCC
TCTTCCAGGGTAGTGGCGGCGTCGATCTGGACCCGTTTCTGCACCTTGGGCGACAGCGTGGCGGC
TGCCAGCTTGAGGATGGGCAGCGCGCGCGGCGAGCTCTGCGAGAGCTTGCGGGTGGCCTCCTGGG
CGGCGCGGCCGAGCCTGGGCGACGTGGTGGACGCAGCAGCGTGGGCCACGGCGTCTGCGCGTGCT
GCTCTCGCGGCCTCCTTGGCCTGGACGTCGCGGGCTCGCTGCTCG
Right flanking sequence: Indices 247287 -- 247786
AGCCGGGCCTTGCGGGCCGCGCTCTCCTTGCGCATGAGCCGGGCCTGCTCCGCGTCGCGCTCAGC
CTGCTCGGCCTCACGGGCCTCACGGGCCTCACGGGCCTCACGGGCCTTTTGCTCACGAGCCTCAG
CCTGGGCCTTCTCACGAGCCTCAGCTTCAGCCTCGGCTTTAGCCTCGGCCTCAGCTTCACGGGCC
TTACGCGCGTCCTGCTCACGGGCGTCCTCCGCGGCCTGGGCCTCCATCTCCTCGCGCACGTCCTC
CTCGTACTCGTAGTCCAGGTCCAGCAGCTCGTCCTTCTTGAGGATCGGCGGCTCGTTCTCCGCCA
GCACGTGGCTGTAGGTCAGCGCCCGCTTAGGCACGTCCGAGAACAACAGCTTGTCGGCGGTGGTG
GTCTCGTCGGCCTCGTCCACCTGGTTGCCGTGCGGCAGCGTGTGCGCCGTCAGCACGTGGTCGGC
CAGCTCGAAGGTCAGGTTCTCGAGCGGCTCCACCTCCAGCTCCGC
Found at i:247272 original size:15 final size:15
Alignment explanation
Indices: 247230--247286 Score: 53
Period size: 15 Copynumber: 3.8 Consensus size: 15
247220 TCGCTGCTCG
247230 CGCTCCTCGCGGGCA
1 CGCTCCTCGCGGGCA
* * *
247245 CGTTCTTCGCGGGCT
1 CGCTCCTCGCGGGCA
*
247260 CGCTCCTCACGGGC-
1 CGCTCCTCGCGGGCA
*
247274 CTGCTCTTCGCGG
1 C-GCTCCTCGCGG
247287 AGCCGGGCCT
Statistics
Matches: 33, Mismatches: 8, Indels: 2
0.77 0.19 0.05
Matches are distributed among these distances:
14 1 0.03
15 32 0.97
ACGTcount: A:0.04, C:0.42, G:0.32, T:0.23
Consensus pattern (15 bp):
CGCTCCTCGCGGGCA
Left flanking sequence: Indices 246730 -- 247229
GGTGCTCCAAGTACAACAACACCTGCGTCAACGTGTTGTCGGGGTTTTCGATGTCGAAGTCGTCG
ATGTTGAACGTGGCTGCGGCCATCGACTTGCGGTACTCCTGTCGCTGGCGCGCGCTGTCCATCTC
GTCCTCCAGCTCGTCCAGCTCGTCCAGCTCCTCGTCCAGCTCCTCCTCGGACTCCTCCTCCTCCA
GCTCCTCCTCGGACTCCTCCTCCTCCAGTTCGTCCTCGGACTCGTCCAGCTCGTCCTCCAGCTCC
TCTTCCAGGGTAGTGGCGGCGTCGATCTGGACCCGTTTCTGCACCTTGGGCGACAGCGTGGCGGC
TGCCAGCTTGAGGATGGGCAGCGCGCGCGGCGAGCTCTGCGAGAGCTTGCGGGTGGCCTCCTGGG
CGGCGCGGCCGAGCCTGGGCGACGTGGTGGACGCAGCAGCGTGGGCCACGGCGTCTGCGCGTGCT
GCTCTCGCGGCCTCCTTGGCCTGGACGTCGCGGGCTCGCTGCTCG
Right flanking sequence: Indices 247287 -- 247786
AGCCGGGCCTTGCGGGCCGCGCTCTCCTTGCGCATGAGCCGGGCCTGCTCCGCGTCGCGCTCAGC
CTGCTCGGCCTCACGGGCCTCACGGGCCTCACGGGCCTCACGGGCCTTTTGCTCACGAGCCTCAG
CCTGGGCCTTCTCACGAGCCTCAGCTTCAGCCTCGGCTTTAGCCTCGGCCTCAGCTTCACGGGCC
TTACGCGCGTCCTGCTCACGGGCGTCCTCCGCGGCCTGGGCCTCCATCTCCTCGCGCACGTCCTC
CTCGTACTCGTAGTCCAGGTCCAGCAGCTCGTCCTTCTTGAGGATCGGCGGCTCGTTCTCCGCCA
GCACGTGGCTGTAGGTCAGCGCCCGCTTAGGCACGTCCGAGAACAACAGCTTGTCGGCGGTGGTG
GTCTCGTCGGCCTCGTCCACCTGGTTGCCGTGCGGCAGCGTGTGCGCCGTCAGCACGTGGTCGGC
CAGCTCGAAGGTCAGGTTCTCGAGCGGCTCCACCTCCAGCTCCGC
Found at i:247415 original size:9 final size:9
Alignment explanation
Indices: 247358--247398 Score: 82
Period size: 9 Copynumber: 4.6 Consensus size: 9
247348 CAGCCTGCTC
247358 GGCCTCACG
1 GGCCTCACG
247367 GGCCTCACG
1 GGCCTCACG
247376 GGCCTCACG
1 GGCCTCACG
247385 GGCCTCACG
1 GGCCTCACG
247394 GGCCT
1 GGCCT
247399 TTTGCTCACG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 32 1.00
ACGTcount: A:0.10, C:0.44, G:0.34, T:0.12
Consensus pattern (9 bp):
GGCCTCACG
Left flanking sequence: Indices 246858 -- 247357
TCGTCCTCCAGCTCGTCCAGCTCGTCCAGCTCCTCGTCCAGCTCCTCCTCGGACTCCTCCTCCTC
CAGCTCCTCCTCGGACTCCTCCTCCTCCAGTTCGTCCTCGGACTCGTCCAGCTCGTCCTCCAGCT
CCTCTTCCAGGGTAGTGGCGGCGTCGATCTGGACCCGTTTCTGCACCTTGGGCGACAGCGTGGCG
GCTGCCAGCTTGAGGATGGGCAGCGCGCGCGGCGAGCTCTGCGAGAGCTTGCGGGTGGCCTCCTG
GGCGGCGCGGCCGAGCCTGGGCGACGTGGTGGACGCAGCAGCGTGGGCCACGGCGTCTGCGCGTG
CTGCTCTCGCGGCCTCCTTGGCCTGGACGTCGCGGGCTCGCTGCTCGCGCTCCTCGCGGGCACGT
TCTTCGCGGGCTCGCTCCTCACGGGCCTGCTCTTCGCGGAGCCGGGCCTTGCGGGCCGCGCTCTC
CTTGCGCATGAGCCGGGCCTGCTCCGCGTCGCGCTCAGCCTGCTC
Right flanking sequence: Indices 247399 -- 247898
TTTGCTCACGAGCCTCAGCCTGGGCCTTCTCACGAGCCTCAGCTTCAGCCTCGGCTTTAGCCTCG
GCCTCAGCTTCACGGGCCTTACGCGCGTCCTGCTCACGGGCGTCCTCCGCGGCCTGGGCCTCCAT
CTCCTCGCGCACGTCCTCCTCGTACTCGTAGTCCAGGTCCAGCAGCTCGTCCTTCTTGAGGATCG
GCGGCTCGTTCTCCGCCAGCACGTGGCTGTAGGTCAGCGCCCGCTTAGGCACGTCCGAGAACAAC
AGCTTGTCGGCGGTGGTGGTCTCGTCGGCCTCGTCCACCTGGTTGCCGTGCGGCAGCGTGTGCGC
CGTCAGCACGTGGTCGGCCAGCTCGAAGGTCAGGTTCTCGAGCGGCTCCACCTCCAGCTCCGCGT
CCTCGTCCAGCTGCTCGCGCACCGGCAGCGTCTTGAGCAGCACCCCGCGCGCCACCATGGCGTTG
GCCTGCTCCAAGTTCTTGATCAGCATCGTGCGCAGCGGCGGCTCG
Found at i:247449 original size:24 final size:24
Alignment explanation
Indices: 247403--247449 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
247393 GGGCCTTTTG
**
247403 CTCACGAGCCTCAGCCTGGGCCTT
1 CTCACGAGCCTCAGCCTCAGCCTT
*
247427 CTCACGAGCCTCAGCTTCAGCCT
1 CTCACGAGCCTCAGCCTCAGCCT
247450 CGGCTTTAGC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.15, C:0.43, G:0.21, T:0.21
Consensus pattern (24 bp):
CTCACGAGCCTCAGCCTCAGCCTT
Left flanking sequence: Indices 246903 -- 247402
TCCTCGGACTCCTCCTCCTCCAGCTCCTCCTCGGACTCCTCCTCCTCCAGTTCGTCCTCGGACTC
GTCCAGCTCGTCCTCCAGCTCCTCTTCCAGGGTAGTGGCGGCGTCGATCTGGACCCGTTTCTGCA
CCTTGGGCGACAGCGTGGCGGCTGCCAGCTTGAGGATGGGCAGCGCGCGCGGCGAGCTCTGCGAG
AGCTTGCGGGTGGCCTCCTGGGCGGCGCGGCCGAGCCTGGGCGACGTGGTGGACGCAGCAGCGTG
GGCCACGGCGTCTGCGCGTGCTGCTCTCGCGGCCTCCTTGGCCTGGACGTCGCGGGCTCGCTGCT
CGCGCTCCTCGCGGGCACGTTCTTCGCGGGCTCGCTCCTCACGGGCCTGCTCTTCGCGGAGCCGG
GCCTTGCGGGCCGCGCTCTCCTTGCGCATGAGCCGGGCCTGCTCCGCGTCGCGCTCAGCCTGCTC
GGCCTCACGGGCCTCACGGGCCTCACGGGCCTCACGGGCCTTTTG
Right flanking sequence: Indices 247450 -- 247949
CGGCTTTAGCCTCGGCCTCAGCTTCACGGGCCTTACGCGCGTCCTGCTCACGGGCGTCCTCCGCG
GCCTGGGCCTCCATCTCCTCGCGCACGTCCTCCTCGTACTCGTAGTCCAGGTCCAGCAGCTCGTC
CTTCTTGAGGATCGGCGGCTCGTTCTCCGCCAGCACGTGGCTGTAGGTCAGCGCCCGCTTAGGCA
CGTCCGAGAACAACAGCTTGTCGGCGGTGGTGGTCTCGTCGGCCTCGTCCACCTGGTTGCCGTGC
GGCAGCGTGTGCGCCGTCAGCACGTGGTCGGCCAGCTCGAAGGTCAGGTTCTCGAGCGGCTCCAC
CTCCAGCTCCGCGTCCTCGTCCAGCTGCTCGCGCACCGGCAGCGTCTTGAGCAGCACCCCGCGCG
CCACCATGGCGTTGGCCTGCTCCAAGTTCTTGATCAGCATCGTGCGCAGCGGCGGCTCGTCGATG
TTGCGCACCACGATCAGCTTGCGCTTGTCGTCGGAGACGGCTTCC
Found at i:247463 original size:12 final size:12
Alignment explanation
Indices: 247433--247471 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
247423 CCTTCTCACG
*
247433 AGCCTCAGCTTC
1 AGCCTCGGCTTC
*
247445 AGCCTCGGCTTT
1 AGCCTCGGCTTC
*
247457 AGCCTCGGCCTC
1 AGCCTCGGCTTC
247469 AGC
1 AGC
247472 TTCACGGGCC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.13, C:0.41, G:0.23, T:0.23
Consensus pattern (12 bp):
AGCCTCGGCTTC
Left flanking sequence: Indices 246933 -- 247432
TCGGACTCCTCCTCCTCCAGTTCGTCCTCGGACTCGTCCAGCTCGTCCTCCAGCTCCTCTTCCAG
GGTAGTGGCGGCGTCGATCTGGACCCGTTTCTGCACCTTGGGCGACAGCGTGGCGGCTGCCAGCT
TGAGGATGGGCAGCGCGCGCGGCGAGCTCTGCGAGAGCTTGCGGGTGGCCTCCTGGGCGGCGCGG
CCGAGCCTGGGCGACGTGGTGGACGCAGCAGCGTGGGCCACGGCGTCTGCGCGTGCTGCTCTCGC
GGCCTCCTTGGCCTGGACGTCGCGGGCTCGCTGCTCGCGCTCCTCGCGGGCACGTTCTTCGCGGG
CTCGCTCCTCACGGGCCTGCTCTTCGCGGAGCCGGGCCTTGCGGGCCGCGCTCTCCTTGCGCATG
AGCCGGGCCTGCTCCGCGTCGCGCTCAGCCTGCTCGGCCTCACGGGCCTCACGGGCCTCACGGGC
CTCACGGGCCTTTTGCTCACGAGCCTCAGCCTGGGCCTTCTCACG
Right flanking sequence: Indices 247472 -- 247971
TTCACGGGCCTTACGCGCGTCCTGCTCACGGGCGTCCTCCGCGGCCTGGGCCTCCATCTCCTCGC
GCACGTCCTCCTCGTACTCGTAGTCCAGGTCCAGCAGCTCGTCCTTCTTGAGGATCGGCGGCTCG
TTCTCCGCCAGCACGTGGCTGTAGGTCAGCGCCCGCTTAGGCACGTCCGAGAACAACAGCTTGTC
GGCGGTGGTGGTCTCGTCGGCCTCGTCCACCTGGTTGCCGTGCGGCAGCGTGTGCGCCGTCAGCA
CGTGGTCGGCCAGCTCGAAGGTCAGGTTCTCGAGCGGCTCCACCTCCAGCTCCGCGTCCTCGTCC
AGCTGCTCGCGCACCGGCAGCGTCTTGAGCAGCACCCCGCGCGCCACCATGGCGTTGGCCTGCTC
CAAGTTCTTGATCAGCATCGTGCGCAGCGGCGGCTCGTCGATGTTGCGCACCACGATCAGCTTGC
GCTTGTCGTCGGAGACGGCTTCCGGCGCCGCCTCCTCGGGCTGCG
Found at i:248352 original size:30 final size:30
Alignment explanation
Indices: 248316--248484 Score: 171
Period size: 30 Copynumber: 5.4 Consensus size: 30
248306 CAGGTGGGTG
*
248316 GGCAGGCCCATTTGGGTGTGAGGGATGGTA
1 GGCAGGCCCATTTGGGTCTGAGGGATGGTA
** * *
248346 GGCAGGCCCATTTGGCGGGT-CGGGATAGTA
1 GGCAGGCCCATTTGG-GTCTGAGGGATGGTA
248376 GGCAGGCCCATTTGGCGAGTCTGAGGGATGGTA
1 GGCAGGCCCATTT-G-G-GTCTGAGGGATGGTA
*
248409 GGCAGGCCCATCTGCTGGGTCTGAGGAATGGTA
1 GGCAGGCCCAT-T--TGGGTCTGAGGGATGGTA
* * *
248442 GGCAGGCCCTTTTGAGCCTG-GGGAATGGTA
1 GGCAGGCCCATTTGGGTCTGAGGG-ATGGTA
248472 GGCAGGCCCATTT
1 GGCAGGCCCATTT
248485 TTTGAGCTTG
Statistics
Matches: 117, Mismatches: 14, Indels: 16
0.80 0.10 0.11
Matches are distributed among these distances:
29 2 0.02
30 60 0.51
31 4 0.03
32 4 0.03
33 43 0.37
34 2 0.02
35 1 0.01
36 1 0.01
ACGTcount: A:0.17, C:0.20, G:0.41, T:0.22
Consensus pattern (30 bp):
GGCAGGCCCATTTGGGTCTGAGGGATGGTA
Left flanking sequence: Indices 247816 -- 248315
GCGTCTTGAGCAGCACCCCGCGCGCCACCATGGCGTTGGCCTGCTCCAAGTTCTTGATCAGCATC
GTGCGCAGCGGCGGCTCGTCGATGTTGCGCACCACGATCAGCTTGCGCTTGTCGTCGGAGACGGC
TTCCGGCGCCGCCTCCTCGGGCTGCGGGCCCGACACCGCGCGCTTGAACATCAGGAAGAAGCCCT
TGGACTCCAGCTTGGCCAGCAGCAGCAGTTCCACCAGCAGCTGCGACGTGGTGCGCTTCATGGGC
GGGGCAAACTCCTGCTGGTACTGCTGGGTGGGTGTGGGTGCCAACGGGAGCGGCTTGGTCACCGG
CAGCTGTGCCAGCCCGGGGGTGCCAATGAGCGGTTGCGACGTCAGCCGTGGCACGGTTTGCGACA
CAATCAGCAGCGCCGGCGCTGAGAACTGGGTCAGCGCCAGCTTGGGCACGGCGCGAGGAGCGTGG
GACGGGGTGGGGCCCATGGTGGGCAGGTTCAGGCCCAGGTGGGTG
Right flanking sequence: Indices 248485 -- 248984
TTTGAGCTTGTGGAATCGTAGGCAGCCCTCTCACCTCCTTCTTGCCTATCCGCAACGGCTTCACC
CCGGCAAACGCCAGGTTCACCGTCAGCTCCACCGTCTTGACCCCCGCCACCAACCGCTCGTTCAA
CGTGTCCTGGCGCAACTTGGCCACCGCACAGAGGTCCGCCACCGCAAACAGCACCTCCAGCACTG
CCCGCTCCACCACCGCGCGCGGCACGAGCACCGGGTACACCGCGTAGTAGCGGGTGGCGGTCAAC
GCAAAGTTGACGGCAGCACGCACCCCCTGCGCGTGCTCGCTGGTGTTGTACTGGTGGTTCTCGCC
CTGGGCCGCCACCTCGGTCGCAAGCACCGCGAGCTTGGCCACCTTGTCGAACAACACGTCGACGT
CGGCCGCGGTGGGCAGGTGCATTGCCACGAGGAACAGCTCGATCAACGCGTGGCAGTCTGCCACC
AACTTGATCAGCACGAGCCCGTGTCCGCTCACGAGCAGCTGCAAG
Found at i:248412 original size:63 final size:64
Alignment explanation
Indices: 248316--248484 Score: 208
Period size: 63 Copynumber: 2.7 Consensus size: 64
248306 CAGGTGGGTG
*
248316 GGCAGGCCCATTTGG-GTGTGAGGGATGGTAGGCAGGCCCATTTGGC-GGGTC-G-GG-ATAGTA
1 GGCAGGCCCATTTGGAGTCTGAGGGATGGTAGGCAGGCCCATTT-GCTGGGTCTGAGGAATAGTA
* *
248376 GGCAGGCCCATTTGGCGAGTCTGAGGGATGGTAGGCAGGCCCATCTGCTGGGTCTGAGGAATGGT
1 GGCAGGCCCATTT-G-GAGTCTGAGGGATGGTAGGCAGGCCCATTTGCTGGGTCTGAGGAATAGT
248441 A
64 A
* *
248442 GGCAGGCCC-TTTTGAGCCTG-GGGAATGGTAGGCAGGCCCATTT
1 GGCAGGCCCATTTGGAGTCTGAGGG-ATGGTAGGCAGGCCCATTT
248485 TTTGAGCTTG
Statistics
Matches: 95, Mismatches: 6, Indels: 13
0.83 0.05 0.11
Matches are distributed among these distances:
60 13 0.14
61 1 0.01
62 6 0.06
63 55 0.58
64 1 0.01
65 5 0.05
66 14 0.15
ACGTcount: A:0.17, C:0.20, G:0.41, T:0.22
Consensus pattern (64 bp):
GGCAGGCCCATTTGGAGTCTGAGGGATGGTAGGCAGGCCCATTTGCTGGGTCTGAGGAATAGTA
Left flanking sequence: Indices 247816 -- 248315
GCGTCTTGAGCAGCACCCCGCGCGCCACCATGGCGTTGGCCTGCTCCAAGTTCTTGATCAGCATC
GTGCGCAGCGGCGGCTCGTCGATGTTGCGCACCACGATCAGCTTGCGCTTGTCGTCGGAGACGGC
TTCCGGCGCCGCCTCCTCGGGCTGCGGGCCCGACACCGCGCGCTTGAACATCAGGAAGAAGCCCT
TGGACTCCAGCTTGGCCAGCAGCAGCAGTTCCACCAGCAGCTGCGACGTGGTGCGCTTCATGGGC
GGGGCAAACTCCTGCTGGTACTGCTGGGTGGGTGTGGGTGCCAACGGGAGCGGCTTGGTCACCGG
CAGCTGTGCCAGCCCGGGGGTGCCAATGAGCGGTTGCGACGTCAGCCGTGGCACGGTTTGCGACA
CAATCAGCAGCGCCGGCGCTGAGAACTGGGTCAGCGCCAGCTTGGGCACGGCGCGAGGAGCGTGG
GACGGGGTGGGGCCCATGGTGGGCAGGTTCAGGCCCAGGTGGGTG
Right flanking sequence: Indices 248485 -- 248984
TTTGAGCTTGTGGAATCGTAGGCAGCCCTCTCACCTCCTTCTTGCCTATCCGCAACGGCTTCACC
CCGGCAAACGCCAGGTTCACCGTCAGCTCCACCGTCTTGACCCCCGCCACCAACCGCTCGTTCAA
CGTGTCCTGGCGCAACTTGGCCACCGCACAGAGGTCCGCCACCGCAAACAGCACCTCCAGCACTG
CCCGCTCCACCACCGCGCGCGGCACGAGCACCGGGTACACCGCGTAGTAGCGGGTGGCGGTCAAC
GCAAAGTTGACGGCAGCACGCACCCCCTGCGCGTGCTCGCTGGTGTTGTACTGGTGGTTCTCGCC
CTGGGCCGCCACCTCGGTCGCAAGCACCGCGAGCTTGGCCACCTTGTCGAACAACACGTCGACGT
CGGCCGCGGTGGGCAGGTGCATTGCCACGAGGAACAGCTCGATCAACGCGTGGCAGTCTGCCACC
AACTTGATCAGCACGAGCCCGTGTCCGCTCACGAGCAGCTGCAAG
Found at i:248488 original size:33 final size:33
Alignment explanation
Indices: 248340--248509 Score: 129
Period size: 33 Copynumber: 5.3 Consensus size: 33
248330 GGTGTGAGGG
* ** *
248340 ATGGTAGGCAGGCCCATTTG--GCGGGTCGGG-
1 ATGGTAGGCAGGCCCATTTGTTGAGCCTGGGGA
* ** *
248370 ATAGTAGGCAGGCCCATTTGGCGAGTCTGAGGG-
1 ATGGTAGGCAGGCCCATTTGTTGAGCCTG-GGGA
* * * * *
248403 ATGGTAGGCAGGCCCATCTGCTGGGTCTGAGGA
1 ATGGTAGGCAGGCCCATTTGTTGAGCCTGGGGA
248436 ATGGTAGGCAGGCCC--TT-TTGAGCCTGGGGA
1 ATGGTAGGCAGGCCCATTTGTTGAGCCTGGGGA
* * *
248466 ATGGTAGGCAGGCCCATTTTTTGAGCTTGTGGA
1 ATGGTAGGCAGGCCCATTTGTTGAGCCTGGGGA
*
248499 ATCGTAGGCAG
1 ATGGTAGGCAG
248510 CCCTCTCACC
Statistics
Matches: 114, Mismatches: 19, Indels: 11
0.79 0.13 0.08
Matches are distributed among these distances:
30 43 0.38
31 1 0.01
32 7 0.06
33 63 0.55
ACGTcount: A:0.18, C:0.19, G:0.39, T:0.24
Consensus pattern (33 bp):
ATGGTAGGCAGGCCCATTTGTTGAGCCTGGGGA
Left flanking sequence: Indices 247840 -- 248339
CCACCATGGCGTTGGCCTGCTCCAAGTTCTTGATCAGCATCGTGCGCAGCGGCGGCTCGTCGATG
TTGCGCACCACGATCAGCTTGCGCTTGTCGTCGGAGACGGCTTCCGGCGCCGCCTCCTCGGGCTG
CGGGCCCGACACCGCGCGCTTGAACATCAGGAAGAAGCCCTTGGACTCCAGCTTGGCCAGCAGCA
GCAGTTCCACCAGCAGCTGCGACGTGGTGCGCTTCATGGGCGGGGCAAACTCCTGCTGGTACTGC
TGGGTGGGTGTGGGTGCCAACGGGAGCGGCTTGGTCACCGGCAGCTGTGCCAGCCCGGGGGTGCC
AATGAGCGGTTGCGACGTCAGCCGTGGCACGGTTTGCGACACAATCAGCAGCGCCGGCGCTGAGA
ACTGGGTCAGCGCCAGCTTGGGCACGGCGCGAGGAGCGTGGGACGGGGTGGGGCCCATGGTGGGC
AGGTTCAGGCCCAGGTGGGTGGGCAGGCCCATTTGGGTGTGAGGG
Right flanking sequence: Indices 248510 -- 249009
CCCTCTCACCTCCTTCTTGCCTATCCGCAACGGCTTCACCCCGGCAAACGCCAGGTTCACCGTCA
GCTCCACCGTCTTGACCCCCGCCACCAACCGCTCGTTCAACGTGTCCTGGCGCAACTTGGCCACC
GCACAGAGGTCCGCCACCGCAAACAGCACCTCCAGCACTGCCCGCTCCACCACCGCGCGCGGCAC
GAGCACCGGGTACACCGCGTAGTAGCGGGTGGCGGTCAACGCAAAGTTGACGGCAGCACGCACCC
CCTGCGCGTGCTCGCTGGTGTTGTACTGGTGGTTCTCGCCCTGGGCCGCCACCTCGGTCGCAAGC
ACCGCGAGCTTGGCCACCTTGTCGAACAACACGTCGACGTCGGCCGCGGTGGGCAGGTGCATTGC
CACGAGGAACAGCTCGATCAACGCGTGGCAGTCTGCCACCAACTTGATCAGCACGAGCCCGTGTC
CGCTCACGAGCAGCTGCAAGTGGCTCTTGGGCGGTGCCGCGGCGT
Found at i:250966 original size:12 final size:14
Alignment explanation
Indices: 250905--250965 Score: 99
Period size: 14 Copynumber: 4.5 Consensus size: 14
250895 GGGTGTAGCA
250905 GTAGGTGTGAATCT
1 GTAGGTGTGAATCT
250919 GTAGGTGTGAATCT
1 GTAGGTGTGAATCT
250933 GTAGGTGTGAATCT
1 GTAGGTGTGAATCT
*
250947 GTA-G-GTGAAACT
1 GTAGGTGTGAATCT
250959 GTAGGTG
1 GTAGGTG
250966 AGCAGCGTGC
Statistics
Matches: 44, Mismatches: 1, Indels: 4
0.90 0.02 0.08
Matches are distributed among these distances:
12 10 0.23
13 2 0.05
14 32 0.73
ACGTcount: A:0.23, C:0.07, G:0.38, T:0.33
Consensus pattern (14 bp):
GTAGGTGTGAATCT
Left flanking sequence: Indices 250405 -- 250904
TCAACACCTTGTAGTGGTGCACTAGGTCTTTGTCACTCATCTGCCCAGGTGGTGTGACGGGTTCT
AGTTTCAGGGAAGGTCGGTGGGAGCGTGGTTGGTTGATGATTTCTCCAGACGCGCTTTTTCAGCC
AGAATTTTACTGCAGCCAGCCTTCGGGTGTGTGCAGGAGGCGGATCAGGTGTGAGGATCCCGATC
TGGGCTTATCAGGGGTGGCGGGTCGGTTGGGTCGGGTGGGGTCGGGCGCGGTGGGGCACGGTGGG
GTGTGGTTGGGTTCGGTTGGGTGGTGTCGGGGTGCCCTGTCGCTTGTTAGTGTCTGCTTAATTGG
GTATTTTAGAGGTGCGAGGTAGTGCGAAGTAGGGTAGTGAGGTGAGTAGTAGGTAGGGGGTAGTG
GGGACGAGAGAGAGGGAGAATGTGGGATAGATAGTAGGTCAGAGTAGTGTGGGTATGGTGTGGTA
GTTAGTGTGTGTGTGTGTGATACAGTAGGGCGAGTGGGTGTAGCA
Right flanking sequence: Indices 250966 -- 251465
AGCAGCGTGCGAAGCCAGTGTGAACAGGTTCAGTGGAGCAGTGAGAGGCCGGGTAAAGCCAGTGT
GCCCAATTAACCTACTATTACACCCATTCTCCGCGTCTACCACCAGCGTTTACGAGCGTCGCCAC
GGCGATGCGTTGCCAGGTGGCTTCCAACGGTTGCGGTATGACGCGTCGTGGTACCACCCGGCCAA
CAATGGGTTCGCTGTGGCTCGCTCGCCATTGTCTCCCACAGCACCCCGACAATAGCACGCTGCCG
TTGTCTCCAGACACGACGCGCCAGGGTGAACCACGTCTATTGTGGGCTGAAACTCCCTCATCCCG
ATTGTGCTTGGTGGTCCCTGTCGCCTATAACCGCGGTGCGTGTATTGTCGGCAAATTTTCTGCAG
AGTACATATTTCACAGGCCGCGAAGGGTCGGTGTTTACGCATGGGGCCCGCCACCGCGCCGGCTC
GAGCAGGAACCCGTGTCTACCACGGTGGGGCACCGTGGGGTACCG
Found at i:262115 original size:26 final size:26
Alignment explanation
Indices: 262066--262118 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
262056 GTATGGAGAT
** * *
262066 TGGGTTGTGGTAGGTTGGTGGTTACG
1 TGGGTTGTGGTACCTAGGTAGTTACG
262092 TGGGTTGTGGTACCTAGGTAGTTACG
1 TGGGTTGTGGTACCTAGGTAGTTACG
262118 T
1 T
262119 AGGTGGTTAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.11, C:0.08, G:0.43, T:0.38
Consensus pattern (26 bp):
TGGGTTGTGGTACCTAGGTAGTTACG
Left flanking sequence: Indices 261566 -- 262065
CAGCAGCGGCCTTGGCGTCCTTGGGAGCCTTGTCGCCCTTATCCAGGGTGCCCGTTGCCCTCGAG
AACGCCGCGGTGATCAAGATGAGATACGAGGTGTTGAGGAAGAGCGACCGGTTCATCTTGTAGAC
ATTGACAAGACGTAGCGCCAAGTCCGTCGTCGGCGAGGTCGCGGGAGTCGCCATGGTCGCTGGTC
TCTGATACAGAGGGAGTTTTGCTGTTTTTTTCCTGATAACGCACCGTTGACCGAGGGCAACCTGG
GCTAGTGTGGGGTTGTATGCACGAAGGCCCGAGAGCCACGGTAGGGCGGGGACGGGGTCTGCGGG
TAGGGGCTGGTGCGGTGTGGTGGTCTGGGGGGTCGGGTGCCACGTGGGAGCGCGGGATCGGTGCT
TTGGTTGTGTTGACCGTTGCGATCTGCCTAATAGGGTTTAGCGATTTGACGTCGGGTAGACACGG
GGTTTCGGCAGTCGCGGTTTGGTGGGAAGGGTGGGGTATGGAGAT
Right flanking sequence: Indices 262119 -- 262618
AGGTGGTTACCCGTTGTTATTACGTTGTTTGTGTGAATTGGGTGTTCAGTGGTTTGAATTGAGAG
CTTGGGTGTGCCGTGCGGCCTATTAGTGCACAGTTACAGTGTCGTTTCGAGTTGACGATACCGAG
GAACAGTGCACTCTAACCAAGTGAGCCTCCTAAGAGGCTTTGATCGCACAATAACGCGCTTTGGT
CGCACAATAACACCAAGGCCCTGGTCAACACCAAGGGCCCTGGTCTTCGTTGAAGTCTATACACT
CTGTAACCTGTGTAAACCCTCGCCCGACATTGCAATCCCGATTAGTCATTAATGTCGGCACCTCG
ATGACGCATGGTAATTAATGGCTCTCCCTGAACTCCCGTACTACTCGGTGGTCTTCACCAGCACC
ACCACCGCCGACATCGATGTACAGCACTACGAAAACTTCTCCACCATAATGATGTTTCTCGCCAA
GCTGATGCCGGGCTTTCTTGGCGTGGACTCTGCCCGCGACGACAA
Found at i:262311 original size:21 final size:21
Alignment explanation
Indices: 262285--262324 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
262275 CTCCTAAGAG
262285 GCTTTGATCGCACAATAACGC
1 GCTTTGATCGCACAATAACGC
*
262306 GCTTTGGTCGCACAATAAC
1 GCTTTGATCGCACAATAAC
262325 ACCAAGGCCC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.25
Consensus pattern (21 bp):
GCTTTGATCGCACAATAACGC
Left flanking sequence: Indices 261785 -- 262284
TTTTTTTCCTGATAACGCACCGTTGACCGAGGGCAACCTGGGCTAGTGTGGGGTTGTATGCACGA
AGGCCCGAGAGCCACGGTAGGGCGGGGACGGGGTCTGCGGGTAGGGGCTGGTGCGGTGTGGTGGT
CTGGGGGGTCGGGTGCCACGTGGGAGCGCGGGATCGGTGCTTTGGTTGTGTTGACCGTTGCGATC
TGCCTAATAGGGTTTAGCGATTTGACGTCGGGTAGACACGGGGTTTCGGCAGTCGCGGTTTGGTG
GGAAGGGTGGGGTATGGAGATTGGGTTGTGGTAGGTTGGTGGTTACGTGGGTTGTGGTACCTAGG
TAGTTACGTAGGTGGTTACCCGTTGTTATTACGTTGTTTGTGTGAATTGGGTGTTCAGTGGTTTG
AATTGAGAGCTTGGGTGTGCCGTGCGGCCTATTAGTGCACAGTTACAGTGTCGTTTCGAGTTGAC
GATACCGAGGAACAGTGCACTCTAACCAAGTGAGCCTCCTAAGAG
Right flanking sequence: Indices 262325 -- 262824
ACCAAGGCCCTGGTCAACACCAAGGGCCCTGGTCTTCGTTGAAGTCTATACACTCTGTAACCTGT
GTAAACCCTCGCCCGACATTGCAATCCCGATTAGTCATTAATGTCGGCACCTCGATGACGCATGG
TAATTAATGGCTCTCCCTGAACTCCCGTACTACTCGGTGGTCTTCACCAGCACCACCACCGCCGA
CATCGATGTACAGCACTACGAAAACTTCTCCACCATAATGATGTTTCTCGCCAAGCTGATGCCGG
GCTTTCTTGGCGTGGACTCTGCCCGCGACGACAAATTGGGCATCACCGTGAGCTACTGGCAGGAC
CTCGAGAGCATCCGCCAGTGGAAGCAGCAGGGCGACCACAAATTGGCCCAGGAAGCAGGCAAGGC
CGAGTTCTACAAGTCGTACACTGTACGCGTGGCCAAGGTCGAGCGCCAGTACTCTTTTGAGAAAT
AAGCACCGTAAGGCACTAGTGTATTGTTGATCGTAAAACCCGAAT
Found at i:262345 original size:18 final size:19
Alignment explanation
Indices: 262322--262358 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
262312 GTCGCACAAT
262322 AACACCAA-GGCCCTGGTC
1 AACACCAAGGGCCCTGGTC
262340 AACACCAAGGGCCCTGGTC
1 AACACCAAGGGCCCTGGTC
262359 TTCGTTGAAG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 8 0.44
19 10 0.56
ACGTcount: A:0.27, C:0.38, G:0.24, T:0.11
Consensus pattern (19 bp):
AACACCAAGGGCCCTGGTC
Left flanking sequence: Indices 261822 -- 262321
CTGGGCTAGTGTGGGGTTGTATGCACGAAGGCCCGAGAGCCACGGTAGGGCGGGGACGGGGTCTG
CGGGTAGGGGCTGGTGCGGTGTGGTGGTCTGGGGGGTCGGGTGCCACGTGGGAGCGCGGGATCGG
TGCTTTGGTTGTGTTGACCGTTGCGATCTGCCTAATAGGGTTTAGCGATTTGACGTCGGGTAGAC
ACGGGGTTTCGGCAGTCGCGGTTTGGTGGGAAGGGTGGGGTATGGAGATTGGGTTGTGGTAGGTT
GGTGGTTACGTGGGTTGTGGTACCTAGGTAGTTACGTAGGTGGTTACCCGTTGTTATTACGTTGT
TTGTGTGAATTGGGTGTTCAGTGGTTTGAATTGAGAGCTTGGGTGTGCCGTGCGGCCTATTAGTG
CACAGTTACAGTGTCGTTTCGAGTTGACGATACCGAGGAACAGTGCACTCTAACCAAGTGAGCCT
CCTAAGAGGCTTTGATCGCACAATAACGCGCTTTGGTCGCACAAT
Right flanking sequence: Indices 262359 -- 262858
TTCGTTGAAGTCTATACACTCTGTAACCTGTGTAAACCCTCGCCCGACATTGCAATCCCGATTAG
TCATTAATGTCGGCACCTCGATGACGCATGGTAATTAATGGCTCTCCCTGAACTCCCGTACTACT
CGGTGGTCTTCACCAGCACCACCACCGCCGACATCGATGTACAGCACTACGAAAACTTCTCCACC
ATAATGATGTTTCTCGCCAAGCTGATGCCGGGCTTTCTTGGCGTGGACTCTGCCCGCGACGACAA
ATTGGGCATCACCGTGAGCTACTGGCAGGACCTCGAGAGCATCCGCCAGTGGAAGCAGCAGGGCG
ACCACAAATTGGCCCAGGAAGCAGGCAAGGCCGAGTTCTACAAGTCGTACACTGTACGCGTGGCC
AAGGTCGAGCGCCAGTACTCTTTTGAGAAATAAGCACCGTAAGGCACTAGTGTATTGTTGATCGT
AAAACCCGAATATACAAACTCTAGATACTAGGCCGGCGACCGCCG
Found at i:268244 original size:16 final size:16
Alignment explanation
Indices: 268223--268283 Score: 113
Period size: 16 Copynumber: 3.8 Consensus size: 16
268213 AAAAATACCC
*
268223 CATACATCCAAACACA
1 CATACATCTAAACACA
268239 CATACATCTAAACACA
1 CATACATCTAAACACA
268255 CATACATCTAAACACA
1 CATACATCTAAACACA
268271 CATACATCTAAAC
1 CATACATCTAAAC
268284 CACTAACCCT
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
16 44 1.00
ACGTcount: A:0.49, C:0.33, G:0.00, T:0.18
Consensus pattern (16 bp):
CATACATCTAAACACA
Left flanking sequence: Indices 267723 -- 268222
GTGTGCGGCTGTTTGAGAGCCTGTTGAAAAATGTGTCGCAGTTTGAATGTGTGCCTGTACATAGT
GTTGGTTGGGTTAGGGAGCTCCTGACCAACAAATGGTTTGTTTCGTGCGGCTTAGAATCTGAAAG
AGGGGCAGGGCCGGAGAACACATGAGGGGTAGCATCGCGGGGCCGGTCGACACGACAAACGATCG
TCGAGCCTCCGGAGATAAGCAGGCGTAGTGGGACGCAGCGGGCGGTAATTGGATTTAACCTGGGT
GCGTCACAATAGGCTGGTGATGGCGGAGATAGACTCCGAGACGACGCGTAATGAGACGATGGTCT
TGGCGTGACTAAAGCGATCTACACAAACAGACAATTAAGAGTTATCACAGACAATTATTCACCAC
AGCAGTTACAAACACAGACAATTACTGAAACCAAACGAGTTAAACCACAGCCAACAAACCACCAC
ATACATAAACCACCACAAACGTCTACCACGAACATAAAAATACCC
Right flanking sequence: Indices 268284 -- 268783
CACTAACCCTATCTAACACCCTCCAAACTACTAACCCCCCATACCATCCCAACAATTCCACTATC
TCTCCTATTGTACCATAACCACCTGACCCGTAACCTCCACCTCACCTCCACCTCACCTCCACCTC
GTCCACCTCACATCACCCCCGCATCACCTCCACATCACCCACTGCGCGTCTGATGCCTTGCCTTC
AGCCACGTAATTACCATTCGCCTCTAATTACCGTTCGCCACCTCTCGAAACGAACCCCGCCCCCG
TATATACCTGCCGCCACCACGTAACTGGACGATCGCCGTTGCCTGGCTGCGGTTACGAGCGCACC
AATCGCGGCGACCCGTTTCCAGGGTCATGTATTACGTCGAGGCACGTCATTGTTTTTTACAGGGC
ACCAATCGGGATCGCGGGAAAGCGCCGTGACCCAGGGCAGGGCCCACCACCACCGCAGCCACCGT
AGCCACCCACCACCTCTGCCACCCCGTCGCGGGCCGCCCGCTCGG
Found at i:268397 original size:11 final size:11
Alignment explanation
Indices: 268381--268413 Score: 66
Period size: 11 Copynumber: 3.0 Consensus size: 11
268371 CTGACCCGTA
268381 ACCTCCACCTC
1 ACCTCCACCTC
268392 ACCTCCACCTC
1 ACCTCCACCTC
268403 ACCTCCACCTC
1 ACCTCCACCTC
268414 GTCCACCTCA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.18, C:0.64, G:0.00, T:0.18
Consensus pattern (11 bp):
ACCTCCACCTC
Left flanking sequence: Indices 267881 -- 268380
GTAGCATCGCGGGGCCGGTCGACACGACAAACGATCGTCGAGCCTCCGGAGATAAGCAGGCGTAG
TGGGACGCAGCGGGCGGTAATTGGATTTAACCTGGGTGCGTCACAATAGGCTGGTGATGGCGGAG
ATAGACTCCGAGACGACGCGTAATGAGACGATGGTCTTGGCGTGACTAAAGCGATCTACACAAAC
AGACAATTAAGAGTTATCACAGACAATTATTCACCACAGCAGTTACAAACACAGACAATTACTGA
AACCAAACGAGTTAAACCACAGCCAACAAACCACCACATACATAAACCACCACAAACGTCTACCA
CGAACATAAAAATACCCCATACATCCAAACACACATACATCTAAACACACATACATCTAAACACA
CATACATCTAAACCACTAACCCTATCTAACACCCTCCAAACTACTAACCCCCCATACCATCCCAA
CAATTCCACTATCTCTCCTATTGTACCATAACCACCTGACCCGTA
Right flanking sequence: Indices 268414 -- 268913
GTCCACCTCACATCACCCCCGCATCACCTCCACATCACCCACTGCGCGTCTGATGCCTTGCCTTC
AGCCACGTAATTACCATTCGCCTCTAATTACCGTTCGCCACCTCTCGAAACGAACCCCGCCCCCG
TATATACCTGCCGCCACCACGTAACTGGACGATCGCCGTTGCCTGGCTGCGGTTACGAGCGCACC
AATCGCGGCGACCCGTTTCCAGGGTCATGTATTACGTCGAGGCACGTCATTGTTTTTTACAGGGC
ACCAATCGGGATCGCGGGAAAGCGCCGTGACCCAGGGCAGGGCCCACCACCACCGCAGCCACCGT
AGCCACCCACCACCTCTGCCACCCCGTCGCGGGCCGCCCGCTCGGACTTTACCGTCGCCCCAGAA
ATTTTTTCGCGGAGACGCAGTTCCCCACACTTCGCTGGGCGTACCCCACCTGAATCACAACCCGA
GACGGCACGAGAGGGGTTGGCGAGGGGACGGAGCAAAGCCATATG
Found at i:268400 original size:6 final size:6
Alignment explanation
Indices: 268381--268413 Score: 52
Period size: 6 Copynumber: 5.8 Consensus size: 6
268371 CTGACCCGTA
268381 ACCTCC ACCT-C ACCTCC ACCT-C ACCTCC ACCTC
1 ACCTCC ACCTCC ACCTCC ACCTCC ACCTCC ACCTC
268414 GTCCACCTCA
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
5 10 0.40
6 15 0.60
ACGTcount: A:0.18, C:0.64, G:0.00, T:0.18
Consensus pattern (6 bp):
ACCTCC
Left flanking sequence: Indices 267881 -- 268380
GTAGCATCGCGGGGCCGGTCGACACGACAAACGATCGTCGAGCCTCCGGAGATAAGCAGGCGTAG
TGGGACGCAGCGGGCGGTAATTGGATTTAACCTGGGTGCGTCACAATAGGCTGGTGATGGCGGAG
ATAGACTCCGAGACGACGCGTAATGAGACGATGGTCTTGGCGTGACTAAAGCGATCTACACAAAC
AGACAATTAAGAGTTATCACAGACAATTATTCACCACAGCAGTTACAAACACAGACAATTACTGA
AACCAAACGAGTTAAACCACAGCCAACAAACCACCACATACATAAACCACCACAAACGTCTACCA
CGAACATAAAAATACCCCATACATCCAAACACACATACATCTAAACACACATACATCTAAACACA
CATACATCTAAACCACTAACCCTATCTAACACCCTCCAAACTACTAACCCCCCATACCATCCCAA
CAATTCCACTATCTCTCCTATTGTACCATAACCACCTGACCCGTA
Right flanking sequence: Indices 268414 -- 268913
GTCCACCTCACATCACCCCCGCATCACCTCCACATCACCCACTGCGCGTCTGATGCCTTGCCTTC
AGCCACGTAATTACCATTCGCCTCTAATTACCGTTCGCCACCTCTCGAAACGAACCCCGCCCCCG
TATATACCTGCCGCCACCACGTAACTGGACGATCGCCGTTGCCTGGCTGCGGTTACGAGCGCACC
AATCGCGGCGACCCGTTTCCAGGGTCATGTATTACGTCGAGGCACGTCATTGTTTTTTACAGGGC
ACCAATCGGGATCGCGGGAAAGCGCCGTGACCCAGGGCAGGGCCCACCACCACCGCAGCCACCGT
AGCCACCCACCACCTCTGCCACCCCGTCGCGGGCCGCCCGCTCGGACTTTACCGTCGCCCCAGAA
ATTTTTTCGCGGAGACGCAGTTCCCCACACTTCGCTGGGCGTACCCCACCTGAATCACAACCCGA
GACGGCACGAGAGGGGTTGGCGAGGGGACGGAGCAAAGCCATATG
Found at i:273057 original size:21 final size:21
Alignment explanation
Indices: 273014--273057 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 21
273004 TATGTGGGAA
*
273014 TGGTAGGCGTGGGACGAAGAT
1 TGGTAGGCGTGGGACAAAGAT
* * *
273035 TGGTTGGCGTGGGATAAATAT
1 TGGTAGGCGTGGGACAAAGAT
273056 TG
1 TG
273058 AATGCGTATG
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.23, C:0.07, G:0.43, T:0.27
Consensus pattern (21 bp):
TGGTAGGCGTGGGACAAAGAT
Left flanking sequence: Indices 272514 -- 273013
AGTAGTCTGGCGTATTCAACAAACGGTGGGACATTCCTCAGATCTCTGTCTCAATTGAAAACAAA
TATCGGAAACTAGGAACTTTCCAGCCCCACCACTACCCCCAAGAAAGAACCTAAACACATAATAA
GATCTCTGCTTGTCAATGACCCTCTCCACCACCCACCAGAGCCAACAACTCCGTCACCACTGCAA
CAGCAAATGTCGCAAATACCCCGGTTTTTCGCTGCCACCAGGAGGTCTTGTGAGTTAAGGCCACC
AGCAAAGAAGCGTTGGGGGGTCTGGGGGGCGCCGCTTGCGGCCCCCCAGCAGCAAGCCACGCGTT
GATGGCAGACAATAGGTGAAAATTGCTGTGGGATGAAGATTGAAGACGTATGGTGGTCGAACTGC
GTGGGATGAAGAATAACGGTGTCGAATGGGTGCAAAATGTTAGCTTGGGAGGTGGAGGGTGTATC
TTAGGTCTGGGAAGATGACAATGATCAGCGTGGGATATGTGGGAA
Right flanking sequence: Indices 273058 -- 273557
AATGCGTATGGCGTATGGCATTGTGTGCGTAGACAGAGGGTTGCAGTCGTGGGTGGGTGCAAATC
TTGGGCGTGGGATGAAGAATGAGGGGTATGGTGGTTGTGGGCGACATGGTGAAACCTGTAGGTGG
GGTATGTGACCATGGCAGGCGTGGATTGGTGAGAATTGTAGGCTTAGTTGGAGTAGCCTCGTGCG
CAGGCTGGCCTACAATCTTGGCGTACATTCGTGGGATGGCTTACGATTATTTTGGACGTCGTGAT
CGTGGAGATCGTGGCATATGATTCTAGACGTACGATCGCAGGCAAGATCGTGGCACATGATTATG
GACGTACGATCGTAGGAAAGATCGTGGCATATGATTACGGACGTACGATCTTCCGCGTACGATCT
TGGGCGTACGATCGTGGCCTGGGGTGAGGACGAAGGGGGTGGCTGTGATGGTACGAGGTATTTTA
TCGGTACCCCTGGGGACGGGGTGGAGAGGTGGGGTGGCGAGGTGG
Found at i:273366 original size:39 final size:39
Alignment explanation
Indices: 273323--273432 Score: 159
Period size: 39 Copynumber: 2.8 Consensus size: 39
273313 GTGATCGTGG
* *
273323 AGATCGTGGCATATGATTCTAGACGTACGATCGCAGGCA
1 AGATCGTGGCATATGATTCTGGACGTACGATCGCAGGAA
* * *
273362 AGATCGTGGCACATGATTATGGACGTACGATCGTAGGAA
1 AGATCGTGGCATATGATTCTGGACGTACGATCGCAGGAA
273401 AGATCGTGGCATATGATTAC-GGACGTACGATC
1 AGATCGTGGCATATGATT-CTGGACGTACGATC
273433 TTCCGCGTAC
Statistics
Matches: 63, Mismatches: 7, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
39 63 1.00
ACGTcount: A:0.29, C:0.18, G:0.29, T:0.24
Consensus pattern (39 bp):
AGATCGTGGCATATGATTCTGGACGTACGATCGCAGGAA
Left flanking sequence: Indices 272823 -- 273322
CAGCAAGCCACGCGTTGATGGCAGACAATAGGTGAAAATTGCTGTGGGATGAAGATTGAAGACGT
ATGGTGGTCGAACTGCGTGGGATGAAGAATAACGGTGTCGAATGGGTGCAAAATGTTAGCTTGGG
AGGTGGAGGGTGTATCTTAGGTCTGGGAAGATGACAATGATCAGCGTGGGATATGTGGGAATGGT
AGGCGTGGGACGAAGATTGGTTGGCGTGGGATAAATATTGAATGCGTATGGCGTATGGCATTGTG
TGCGTAGACAGAGGGTTGCAGTCGTGGGTGGGTGCAAATCTTGGGCGTGGGATGAAGAATGAGGG
GTATGGTGGTTGTGGGCGACATGGTGAAACCTGTAGGTGGGGTATGTGACCATGGCAGGCGTGGA
TTGGTGAGAATTGTAGGCTTAGTTGGAGTAGCCTCGTGCGCAGGCTGGCCTACAATCTTGGCGTA
CATTCGTGGGATGGCTTACGATTATTTTGGACGTCGTGATCGTGG
Right flanking sequence: Indices 273433 -- 273932
TTCCGCGTACGATCTTGGGCGTACGATCGTGGCCTGGGGTGAGGACGAAGGGGGTGGCTGTGATG
GTACGAGGTATTTTATCGGTACCCCTGGGGACGGGGTGGAGAGGTGGGGTGGCGAGGTGGGGTGG
AGGTGGGATGGTACAGTAAAAAACAGAAAAGTGGTAGGAAAAGGCAGAAAAGTGGTAGAAAAAAG
CAGAATGCTGCGAGGAAGCAGGGAATTACCCGTTTGGGCGGGCCTACGTCGTACCTGTGGGAGTG
TGTACAAACAGTCGATAGACCCGACTGACAACGACTAGTTCCATTGTCGTCGTAAACCATAGTGT
CCTGGGCTTTATAGCGTGCTGCCGACGTGTTATTGTGGGCTGTGCCCGTGTCCGACAAAACCTGT
GTCCAAGCCCATCGACTGTTCTTTCGTCCTGTGTCCGGGCCATCGAAGGTTGTAGTGTTCGGTCA
GTGTGTCCAGTGCGTGTCCAGTGCGTGTCCCGTGCGTGTCACCGT
Found at i:273443 original size:14 final size:14
Alignment explanation
Indices: 273424--273460 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
273414 TGATTACGGA
273424 CGTACGATCTTCCG
1 CGTACGATCTTCCG
**
273438 CGTACGATCTTGGG
1 CGTACGATCTTCCG
273452 CGTACGATC
1 CGTACGATC
273461 GTGGCCTGGG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.16, C:0.30, G:0.27, T:0.27
Consensus pattern (14 bp):
CGTACGATCTTCCG
Left flanking sequence: Indices 272924 -- 273423
GTCGAATGGGTGCAAAATGTTAGCTTGGGAGGTGGAGGGTGTATCTTAGGTCTGGGAAGATGACA
ATGATCAGCGTGGGATATGTGGGAATGGTAGGCGTGGGACGAAGATTGGTTGGCGTGGGATAAAT
ATTGAATGCGTATGGCGTATGGCATTGTGTGCGTAGACAGAGGGTTGCAGTCGTGGGTGGGTGCA
AATCTTGGGCGTGGGATGAAGAATGAGGGGTATGGTGGTTGTGGGCGACATGGTGAAACCTGTAG
GTGGGGTATGTGACCATGGCAGGCGTGGATTGGTGAGAATTGTAGGCTTAGTTGGAGTAGCCTCG
TGCGCAGGCTGGCCTACAATCTTGGCGTACATTCGTGGGATGGCTTACGATTATTTTGGACGTCG
TGATCGTGGAGATCGTGGCATATGATTCTAGACGTACGATCGCAGGCAAGATCGTGGCACATGAT
TATGGACGTACGATCGTAGGAAAGATCGTGGCATATGATTACGGA
Right flanking sequence: Indices 273461 -- 273960
GTGGCCTGGGGTGAGGACGAAGGGGGTGGCTGTGATGGTACGAGGTATTTTATCGGTACCCCTGG
GGACGGGGTGGAGAGGTGGGGTGGCGAGGTGGGGTGGAGGTGGGATGGTACAGTAAAAAACAGAA
AAGTGGTAGGAAAAGGCAGAAAAGTGGTAGAAAAAAGCAGAATGCTGCGAGGAAGCAGGGAATTA
CCCGTTTGGGCGGGCCTACGTCGTACCTGTGGGAGTGTGTACAAACAGTCGATAGACCCGACTGA
CAACGACTAGTTCCATTGTCGTCGTAAACCATAGTGTCCTGGGCTTTATAGCGTGCTGCCGACGT
GTTATTGTGGGCTGTGCCCGTGTCCGACAAAACCTGTGTCCAAGCCCATCGACTGTTCTTTCGTC
CTGTGTCCGGGCCATCGAAGGTTGTAGTGTTCGGTCAGTGTGTCCAGTGCGTGTCCAGTGCGTGT
CCCGTGCGTGTCACCGTGTCCTGTGCGAGTCATCGTCGCACCCTG
Found at i:273548 original size:13 final size:13
Alignment explanation
Indices: 273530--273564 Score: 61
Period size: 13 Copynumber: 2.7 Consensus size: 13
273520 CCCTGGGGAC
273530 GGGGTGGAGAGGT
1 GGGGTGGAGAGGT
*
273543 GGGGTGGCGAGGT
1 GGGGTGGAGAGGT
273556 GGGGTGGAG
1 GGGGTGGAG
273565 GTGGGATGGT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.11, C:0.03, G:0.71, T:0.14
Consensus pattern (13 bp):
GGGGTGGAGAGGT
Left flanking sequence: Indices 273030 -- 273529
AAGATTGGTTGGCGTGGGATAAATATTGAATGCGTATGGCGTATGGCATTGTGTGCGTAGACAGA
GGGTTGCAGTCGTGGGTGGGTGCAAATCTTGGGCGTGGGATGAAGAATGAGGGGTATGGTGGTTG
TGGGCGACATGGTGAAACCTGTAGGTGGGGTATGTGACCATGGCAGGCGTGGATTGGTGAGAATT
GTAGGCTTAGTTGGAGTAGCCTCGTGCGCAGGCTGGCCTACAATCTTGGCGTACATTCGTGGGAT
GGCTTACGATTATTTTGGACGTCGTGATCGTGGAGATCGTGGCATATGATTCTAGACGTACGATC
GCAGGCAAGATCGTGGCACATGATTATGGACGTACGATCGTAGGAAAGATCGTGGCATATGATTA
CGGACGTACGATCTTCCGCGTACGATCTTGGGCGTACGATCGTGGCCTGGGGTGAGGACGAAGGG
GGTGGCTGTGATGGTACGAGGTATTTTATCGGTACCCCTGGGGAC
Right flanking sequence: Indices 273565 -- 274064
GTGGGATGGTACAGTAAAAAACAGAAAAGTGGTAGGAAAAGGCAGAAAAGTGGTAGAAAAAAGCA
GAATGCTGCGAGGAAGCAGGGAATTACCCGTTTGGGCGGGCCTACGTCGTACCTGTGGGAGTGTG
TACAAACAGTCGATAGACCCGACTGACAACGACTAGTTCCATTGTCGTCGTAAACCATAGTGTCC
TGGGCTTTATAGCGTGCTGCCGACGTGTTATTGTGGGCTGTGCCCGTGTCCGACAAAACCTGTGT
CCAAGCCCATCGACTGTTCTTTCGTCCTGTGTCCGGGCCATCGAAGGTTGTAGTGTTCGGTCAGT
GTGTCCAGTGCGTGTCCAGTGCGTGTCCCGTGCGTGTCACCGTGTCCTGTGCGAGTCATCGTCGC
ACCCTGTGCCTACTTCCAGTGTCCCGGTGTGTCTAATTTCATGCCTCCCAGCGACGCGATGAGTG
GTTACCCAACATTTGCCCCGCGGTCCCCCAGTACGTCACTGTTCC
Found at i:273610 original size:21 final size:21
Alignment explanation
Indices: 273580--273632 Score: 81
Period size: 21 Copynumber: 2.6 Consensus size: 21
273570 ATGGTACAGT
273580 AAAAAA-CAGAAAAGTGGTAG
1 AAAAAAGCAGAAAAGTGGTAG
* *
273600 GAAAAGGCAGAAAAGTGGTAG
1 AAAAAAGCAGAAAAGTGGTAG
273621 AAAAAAGCAGAA
1 AAAAAAGCAGAA
273633 TGCTGCGAGG
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
20 4 0.14
21 24 0.86
ACGTcount: A:0.58, C:0.06, G:0.28, T:0.08
Consensus pattern (21 bp):
AAAAAAGCAGAAAAGTGGTAG
Left flanking sequence: Indices 273080 -- 273579
GTGTGCGTAGACAGAGGGTTGCAGTCGTGGGTGGGTGCAAATCTTGGGCGTGGGATGAAGAATGA
GGGGTATGGTGGTTGTGGGCGACATGGTGAAACCTGTAGGTGGGGTATGTGACCATGGCAGGCGT
GGATTGGTGAGAATTGTAGGCTTAGTTGGAGTAGCCTCGTGCGCAGGCTGGCCTACAATCTTGGC
GTACATTCGTGGGATGGCTTACGATTATTTTGGACGTCGTGATCGTGGAGATCGTGGCATATGAT
TCTAGACGTACGATCGCAGGCAAGATCGTGGCACATGATTATGGACGTACGATCGTAGGAAAGAT
CGTGGCATATGATTACGGACGTACGATCTTCCGCGTACGATCTTGGGCGTACGATCGTGGCCTGG
GGTGAGGACGAAGGGGGTGGCTGTGATGGTACGAGGTATTTTATCGGTACCCCTGGGGACGGGGT
GGAGAGGTGGGGTGGCGAGGTGGGGTGGAGGTGGGATGGTACAGT
Right flanking sequence: Indices 273633 -- 274132
TGCTGCGAGGAAGCAGGGAATTACCCGTTTGGGCGGGCCTACGTCGTACCTGTGGGAGTGTGTAC
AAACAGTCGATAGACCCGACTGACAACGACTAGTTCCATTGTCGTCGTAAACCATAGTGTCCTGG
GCTTTATAGCGTGCTGCCGACGTGTTATTGTGGGCTGTGCCCGTGTCCGACAAAACCTGTGTCCA
AGCCCATCGACTGTTCTTTCGTCCTGTGTCCGGGCCATCGAAGGTTGTAGTGTTCGGTCAGTGTG
TCCAGTGCGTGTCCAGTGCGTGTCCCGTGCGTGTCACCGTGTCCTGTGCGAGTCATCGTCGCACC
CTGTGCCTACTTCCAGTGTCCCGGTGTGTCTAATTTCATGCCTCCCAGCGACGCGATGAGTGGTT
ACCCAACATTTGCCCCGCGGTCCCCCAGTACGTCACTGTTCCATCCGCTTCGAAGCAGTCTTTCC
GCCACAGTTTAGGCTTTTAAGCAGAGATAGGAGTTACTAGATCAC
Found at i:273904 original size:11 final size:11
Alignment explanation
Indices: 273890--273927 Score: 67
Period size: 11 Copynumber: 3.5 Consensus size: 11
273880 TTCGGTCAGT
273890 GTGTCCAGTGC
1 GTGTCCAGTGC
273901 GTGTCCAGTGC
1 GTGTCCAGTGC
*
273912 GTGTCCCGTGC
1 GTGTCCAGTGC
273923 GTGTC
1 GTGTC
273928 ACCGTGTCCT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
11 26 1.00
ACGTcount: A:0.05, C:0.29, G:0.37, T:0.29
Consensus pattern (11 bp):
GTGTCCAGTGC
Left flanking sequence: Indices 273390 -- 273889
GATCGTAGGAAAGATCGTGGCATATGATTACGGACGTACGATCTTCCGCGTACGATCTTGGGCGT
ACGATCGTGGCCTGGGGTGAGGACGAAGGGGGTGGCTGTGATGGTACGAGGTATTTTATCGGTAC
CCCTGGGGACGGGGTGGAGAGGTGGGGTGGCGAGGTGGGGTGGAGGTGGGATGGTACAGTAAAAA
ACAGAAAAGTGGTAGGAAAAGGCAGAAAAGTGGTAGAAAAAAGCAGAATGCTGCGAGGAAGCAGG
GAATTACCCGTTTGGGCGGGCCTACGTCGTACCTGTGGGAGTGTGTACAAACAGTCGATAGACCC
GACTGACAACGACTAGTTCCATTGTCGTCGTAAACCATAGTGTCCTGGGCTTTATAGCGTGCTGC
CGACGTGTTATTGTGGGCTGTGCCCGTGTCCGACAAAACCTGTGTCCAAGCCCATCGACTGTTCT
TTCGTCCTGTGTCCGGGCCATCGAAGGTTGTAGTGTTCGGTCAGT
Right flanking sequence: Indices 273928 -- 274427
ACCGTGTCCTGTGCGAGTCATCGTCGCACCCTGTGCCTACTTCCAGTGTCCCGGTGTGTCTAATT
TCATGCCTCCCAGCGACGCGATGAGTGGTTACCCAACATTTGCCCCGCGGTCCCCCAGTACGTCA
CTGTTCCATCCGCTTCGAAGCAGTCTTTCCGCCACAGTTTAGGCTTTTAAGCAGAGATAGGAGTT
ACTAGATCACCGGGGGATCGCAACAATCATGGGGTACACAACAAGGCGCATTGTTGAGCCCATGT
GTGGGATCGACAAATTTCACCGTCTAGCAGCGGACTCGTAGATACTCGACGCAAATGCAAAAGCA
ATCAGGGGTAACTGACGACGACGCGGCGGCCCGGTTTCGCTGCCGACGCCGCCACGCAGGCCACG
GGTCCAACAAAGAAAATTAGAGTTTGACCGGGGCTATATGTAGAATAACGGGCGATGCGGTGTCG
CCAAACAACAATCGATCGTTCGACCACCCCCCAGAATGGGGTGAT
Found at i:273935 original size:19 final size:19
Alignment explanation
Indices: 273911--273947 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
273901 GTGTCCAGTG
*
273911 CGTGTCCCGTGCGTGTCAC
1 CGTGTCCCGTGCGAGTCAC
*
273930 CGTGTCCTGTGCGAGTCA
1 CGTGTCCCGTGCGAGTCA
273948 TCGTCGCACC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.08, C:0.32, G:0.32, T:0.27
Consensus pattern (19 bp):
CGTGTCCCGTGCGAGTCAC
Left flanking sequence: Indices 273411 -- 273910
ATATGATTACGGACGTACGATCTTCCGCGTACGATCTTGGGCGTACGATCGTGGCCTGGGGTGAG
GACGAAGGGGGTGGCTGTGATGGTACGAGGTATTTTATCGGTACCCCTGGGGACGGGGTGGAGAG
GTGGGGTGGCGAGGTGGGGTGGAGGTGGGATGGTACAGTAAAAAACAGAAAAGTGGTAGGAAAAG
GCAGAAAAGTGGTAGAAAAAAGCAGAATGCTGCGAGGAAGCAGGGAATTACCCGTTTGGGCGGGC
CTACGTCGTACCTGTGGGAGTGTGTACAAACAGTCGATAGACCCGACTGACAACGACTAGTTCCA
TTGTCGTCGTAAACCATAGTGTCCTGGGCTTTATAGCGTGCTGCCGACGTGTTATTGTGGGCTGT
GCCCGTGTCCGACAAAACCTGTGTCCAAGCCCATCGACTGTTCTTTCGTCCTGTGTCCGGGCCAT
CGAAGGTTGTAGTGTTCGGTCAGTGTGTCCAGTGCGTGTCCAGTG
Right flanking sequence: Indices 273948 -- 274447
TCGTCGCACCCTGTGCCTACTTCCAGTGTCCCGGTGTGTCTAATTTCATGCCTCCCAGCGACGCG
ATGAGTGGTTACCCAACATTTGCCCCGCGGTCCCCCAGTACGTCACTGTTCCATCCGCTTCGAAG
CAGTCTTTCCGCCACAGTTTAGGCTTTTAAGCAGAGATAGGAGTTACTAGATCACCGGGGGATCG
CAACAATCATGGGGTACACAACAAGGCGCATTGTTGAGCCCATGTGTGGGATCGACAAATTTCAC
CGTCTAGCAGCGGACTCGTAGATACTCGACGCAAATGCAAAAGCAATCAGGGGTAACTGACGACG
ACGCGGCGGCCCGGTTTCGCTGCCGACGCCGCCACGCAGGCCACGGGTCCAACAAAGAAAATTAG
AGTTTGACCGGGGCTATATGTAGAATAACGGGCGATGCGGTGTCGCCAAACAACAATCGATCGTT
CGACCACCCCCCAGAATGGGGTGATGCGGTAGAGGCCACCCCCGT
Found at i:277500 original size:16 final size:16
Alignment explanation
Indices: 277479--277589 Score: 136
Period size: 16 Copynumber: 7.1 Consensus size: 16
277469 AATGTCATTG
*
277479 TGGCTAGTACGATACC
1 TGGCTAATACGATACC
*
277495 TGGCTAATAAGATACC
1 TGGCTAATACGATACC
277511 TGGCTAATACGATACC
1 TGGCTAATACGATACC
* *
277527 TGGCTACTAGGATACC
1 TGGCTAATACGATACC
* *
277543 TGGCTACTAGGATACC
1 TGGCTAATACGATACC
*
277559 TGGCT-A-CCGATACC
1 TGGCTAATACGATACC
*
277573 TGGCTAGTACGATACC
1 TGGCTAATACGATACC
277589 T
1 T
277590 ACCTGGCTCG
Statistics
Matches: 83, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
14 11 0.13
16 72 0.87
ACGTcount: A:0.27, C:0.25, G:0.23, T:0.25
Consensus pattern (16 bp):
TGGCTAATACGATACC
Left flanking sequence: Indices 276979 -- 277478
CTCGCACCTGGAGCAGAAGCGCCGCAAGTTGTGCAAGTTGGCGTACGAGCGGTGTTTGCGGCTCA
TCATCGACATTGACAAGTTCAACGCGTTGCCGCCCAAGTCGGCGGACGAGCGCCCGCTGAAGCTG
AAGCGTGCGCGCGTCAACAAGGACGGGTTGCCCAACTTGCTGAAGCACACGGCGTTGATCCGCAT
CTCCAACGAAATCACCACCATCCAGGGCAAGAACGAGCAGTTGAAGCGGTTGCTCGCGCAGTACC
TGTGAACCCCCCACGCTTATGACTAACGAAGGACATTTATAGAATAGGAAGACGATAATAGAACG
CGGATACAGGGAAAGGTGTAGTGAGTGGGTGGTGGGTAGTGGTAGTGGGTGGCTAGGTGGGTGGC
TGTGGCTAGGGATTACCGGGCCAAGTGGCTAATAACGGGATACGAGCAGGAGCTGGTGGCTAGTA
GAGGAAGCTAGTCTGGCCAGGCAGTGTTTGGCTGCAATGTCATTG
Right flanking sequence: Indices 277590 -- 278089
ACCTGGCTCGTTTCAACCTACCAGTAGCTCTAATCGAGCATATATGCCTGCTATTGTGGATTGTA
ATTGTAGTATCTGTAGCTTCGTAACTGTCTTTCCTATCTTCACTTTACCGCTCACCCCTTCATTA
CCCCTTTTCTTCCACCACTGACCTCCGAACCAGTCCCCATTCGTCGCGCTAGCCTGATTTTGTGA
CGGAATACACCTCTCCTCGATACGACGCCCTGCGACCCCTGAACACCGCTTGCATTGTGAGGTCA
CACCATTGATGGCGTGCCTTAATATAGGAGATAGTTACGATAAACCCCGTAACGTGCATAAATCT
ATGGGGGAGCTGCAGCGCGGTGGTGCTGCTGTCCAGGCGCCAGGGAGCAAAAAGAGACTTTAATT
TCTTTGTGGCCGGGCTATGTGCCCGAATGATCTGCAGCATCCTCGGTAAGTGGCACGTCGAGTGG
CCCCGCCACCTGTTTCATCTATATGAAATGACGTGGCGGGGTGCA
Found at i:277531 original size:48 final size:46
Alignment explanation
Indices: 277479--277589 Score: 159
Period size: 48 Copynumber: 2.4 Consensus size: 46
277469 AATGTCATTG
277479 TGGCTAGTACGATACCTGGCTAATAAGATACCTGGCTAATACGATACC
1 TGGCTAGTACGATACCTGGCTAATAAGATACCTGGCT-A-ACGATACC
* * * * *
277527 TGGCTACTAGGATACCTGGCTACTAGGATACCTGGCTACCGATACC
1 TGGCTAGTACGATACCTGGCTAATAAGATACCTGGCTAACGATACC
277573 TGGCTAGTACGATACCT
1 TGGCTAGTACGATACCT
277590 ACCTGGCTCG
Statistics
Matches: 56, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
46 22 0.39
47 1 0.02
48 33 0.59
ACGTcount: A:0.27, C:0.25, G:0.23, T:0.25
Consensus pattern (46 bp):
TGGCTAGTACGATACCTGGCTAATAAGATACCTGGCTAACGATACC
Left flanking sequence: Indices 276979 -- 277478
CTCGCACCTGGAGCAGAAGCGCCGCAAGTTGTGCAAGTTGGCGTACGAGCGGTGTTTGCGGCTCA
TCATCGACATTGACAAGTTCAACGCGTTGCCGCCCAAGTCGGCGGACGAGCGCCCGCTGAAGCTG
AAGCGTGCGCGCGTCAACAAGGACGGGTTGCCCAACTTGCTGAAGCACACGGCGTTGATCCGCAT
CTCCAACGAAATCACCACCATCCAGGGCAAGAACGAGCAGTTGAAGCGGTTGCTCGCGCAGTACC
TGTGAACCCCCCACGCTTATGACTAACGAAGGACATTTATAGAATAGGAAGACGATAATAGAACG
CGGATACAGGGAAAGGTGTAGTGAGTGGGTGGTGGGTAGTGGTAGTGGGTGGCTAGGTGGGTGGC
TGTGGCTAGGGATTACCGGGCCAAGTGGCTAATAACGGGATACGAGCAGGAGCTGGTGGCTAGTA
GAGGAAGCTAGTCTGGCCAGGCAGTGTTTGGCTGCAATGTCATTG
Right flanking sequence: Indices 277590 -- 278089
ACCTGGCTCGTTTCAACCTACCAGTAGCTCTAATCGAGCATATATGCCTGCTATTGTGGATTGTA
ATTGTAGTATCTGTAGCTTCGTAACTGTCTTTCCTATCTTCACTTTACCGCTCACCCCTTCATTA
CCCCTTTTCTTCCACCACTGACCTCCGAACCAGTCCCCATTCGTCGCGCTAGCCTGATTTTGTGA
CGGAATACACCTCTCCTCGATACGACGCCCTGCGACCCCTGAACACCGCTTGCATTGTGAGGTCA
CACCATTGATGGCGTGCCTTAATATAGGAGATAGTTACGATAAACCCCGTAACGTGCATAAATCT
ATGGGGGAGCTGCAGCGCGGTGGTGCTGCTGTCCAGGCGCCAGGGAGCAAAAAGAGACTTTAATT
TCTTTGTGGCCGGGCTATGTGCCCGAATGATCTGCAGCATCCTCGGTAAGTGGCACGTCGAGTGG
CCCCGCCACCTGTTTCATCTATATGAAATGACGTGGCGGGGTGCA
Found at i:279139 original size:13 final size:12
Alignment explanation
Indices: 279123--279179 Score: 71
Period size: 13 Copynumber: 4.7 Consensus size: 12
279113 TCTCTTCATG
279123 TACACTCTTACTC
1 TACACTCTT-CTC
279136 TACACTCTTTCTC
1 TACACTC-TTCTC
279149 TACACTCTTC-C
1 TACACTCTTCTC
* *
279160 TAAACTCTCCTC
1 TACACTCTTCTC
279172 TACACTCT
1 TACACTCT
279180 ATTCAAAGAC
Statistics
Matches: 39, Mismatches: 3, Indels: 5
0.83 0.06 0.11
Matches are distributed among these distances:
11 9 0.23
12 11 0.28
13 17 0.44
14 2 0.05
ACGTcount: A:0.21, C:0.40, G:0.00, T:0.39
Consensus pattern (12 bp):
TACACTCTTCTC
Left flanking sequence: Indices 278623 -- 279122
CTCGGTAGAGGTTATGCTGGAATATGCGGACTCGTTTGAGCAAATGGCCGGGGTCTCGCCTCGCA
AACCGCAATCGTCGGGAGGGTCCGCGAGATACGAGGGAACACGCCACCGGGAGATCGGCACGGCA
ACTTACGGCTAACCCCGCCGGGTAATGTGGGACGGGGGTCAAGTGGAACCGATGGAAGGTTTGGT
GTATTGTCTCGGTTTTGTATTTTTTGTGGAATCTTGCCCAATTTGGGGAGAAAGTGGTTGTAGCA
GGGAGGAACGGTGTGGAACTCGCGTGGACGAGTGGCGTGAGACATAGTGTTGGAATGTTTCTAGT
GTCAATTGGGTTTCATAATAATGGAGGTTGGAGGGGTGATAGTCTTCCAGCCAATAGATTACACG
CATATGGGTGACTAAGCCATGGTTCATCTGAGTATGAGCCCTCTTCTGAATCAACGCAAGAACTG
CAAACAATGTCACATTCCTTTCATACCAATTCTTCTCTCTTCATG
Right flanking sequence: Indices 279180 -- 279679
ATTCAAAGACATTCCGAGCTCTTTCCGCGGATCACCACAACCCACCAAACAATACCCCAGTAGGA
CAACCAAACCAACCACACAATACACCACACATTACACCACACAATCAACCACACACTACACAACT
ACACAACCACACAACCATCCACACCACCCAACCACACCACCTATCCGAACACCACCCAAATGCCC
ACCTCTACACGTCCCATCACCACTTACACGCGTTTTTCACGCGTTGAAAATCACCTCCACCAACA
TGCCTCCCCCGATACCCAAGTCGCTCGAGAGCCACCCAGCGCACCAGTTGAGCATCGGGCTGCCC
GAGATGGTGGCGTCGCTTGCCAGGCTCCACCCGGTGACGCTTCCCAACCACGGCAGTCTCCAGAC
CGACGCCCTCGTGGCGTTGCGGACGCTGCCCACCTACATCTACGTGGTGCTGTGGTTGTACCAGT
GTCGCGGCTACATCAAGCTCCACAACGAGTACTTTGACGTGGACA
Found at i:279152 original size:26 final size:23
Alignment explanation
Indices: 279123--279179 Score: 69
Period size: 23 Copynumber: 2.3 Consensus size: 23
279113 TCTCTTCATG
* *
279123 TACACTCTTACTCTACACTCTTTCTC
1 TACACTCTT-C-CTAAACTC-TCCTC
279149 TACACTCTTCCTAAACTCTCCTC
1 TACACTCTTCCTAAACTCTCCTC
279172 TACACTCT
1 TACACTCT
279180 ATTCAAAGAC
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
23 12 0.41
24 7 0.24
25 1 0.03
26 9 0.31
ACGTcount: A:0.21, C:0.40, G:0.00, T:0.39
Consensus pattern (23 bp):
TACACTCTTCCTAAACTCTCCTC
Left flanking sequence: Indices 278623 -- 279122
CTCGGTAGAGGTTATGCTGGAATATGCGGACTCGTTTGAGCAAATGGCCGGGGTCTCGCCTCGCA
AACCGCAATCGTCGGGAGGGTCCGCGAGATACGAGGGAACACGCCACCGGGAGATCGGCACGGCA
ACTTACGGCTAACCCCGCCGGGTAATGTGGGACGGGGGTCAAGTGGAACCGATGGAAGGTTTGGT
GTATTGTCTCGGTTTTGTATTTTTTGTGGAATCTTGCCCAATTTGGGGAGAAAGTGGTTGTAGCA
GGGAGGAACGGTGTGGAACTCGCGTGGACGAGTGGCGTGAGACATAGTGTTGGAATGTTTCTAGT
GTCAATTGGGTTTCATAATAATGGAGGTTGGAGGGGTGATAGTCTTCCAGCCAATAGATTACACG
CATATGGGTGACTAAGCCATGGTTCATCTGAGTATGAGCCCTCTTCTGAATCAACGCAAGAACTG
CAAACAATGTCACATTCCTTTCATACCAATTCTTCTCTCTTCATG
Right flanking sequence: Indices 279180 -- 279679
ATTCAAAGACATTCCGAGCTCTTTCCGCGGATCACCACAACCCACCAAACAATACCCCAGTAGGA
CAACCAAACCAACCACACAATACACCACACATTACACCACACAATCAACCACACACTACACAACT
ACACAACCACACAACCATCCACACCACCCAACCACACCACCTATCCGAACACCACCCAAATGCCC
ACCTCTACACGTCCCATCACCACTTACACGCGTTTTTCACGCGTTGAAAATCACCTCCACCAACA
TGCCTCCCCCGATACCCAAGTCGCTCGAGAGCCACCCAGCGCACCAGTTGAGCATCGGGCTGCCC
GAGATGGTGGCGTCGCTTGCCAGGCTCCACCCGGTGACGCTTCCCAACCACGGCAGTCTCCAGAC
CGACGCCCTCGTGGCGTTGCGGACGCTGCCCACCTACATCTACGTGGTGCTGTGGTTGTACCAGT
GTCGCGGCTACATCAAGCTCCACAACGAGTACTTTGACGTGGACA
Found at i:279273 original size:12 final size:12
Alignment explanation
Indices: 279256--279305 Score: 66
Period size: 12 Copynumber: 4.2 Consensus size: 12
279246 AACCAAACCA
279256 ACCACACAATAC
1 ACCACACAATAC
*
279268 ACCACACATTAC
1 ACCACACAATAC
279280 ACCACACAAT-C
1 ACCACACAATAC
*
279291 AACCACACACTAC
1 -ACCACACAATAC
279304 AC
1 AC
279306 AACTACACAA
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
11 1 0.03
12 31 0.94
13 1 0.03
ACGTcount: A:0.46, C:0.44, G:0.00, T:0.10
Consensus pattern (12 bp):
ACCACACAATAC
Left flanking sequence: Indices 278756 -- 279255
TACGGCTAACCCCGCCGGGTAATGTGGGACGGGGGTCAAGTGGAACCGATGGAAGGTTTGGTGTA
TTGTCTCGGTTTTGTATTTTTTGTGGAATCTTGCCCAATTTGGGGAGAAAGTGGTTGTAGCAGGG
AGGAACGGTGTGGAACTCGCGTGGACGAGTGGCGTGAGACATAGTGTTGGAATGTTTCTAGTGTC
AATTGGGTTTCATAATAATGGAGGTTGGAGGGGTGATAGTCTTCCAGCCAATAGATTACACGCAT
ATGGGTGACTAAGCCATGGTTCATCTGAGTATGAGCCCTCTTCTGAATCAACGCAAGAACTGCAA
ACAATGTCACATTCCTTTCATACCAATTCTTCTCTCTTCATGTACACTCTTACTCTACACTCTTT
CTCTACACTCTTCCTAAACTCTCCTCTACACTCTATTCAAAGACATTCCGAGCTCTTTCCGCGGA
TCACCACAACCCACCAAACAATACCCCAGTAGGACAACCAAACCA
Right flanking sequence: Indices 279306 -- 279805
AACTACACAACCACACAACCATCCACACCACCCAACCACACCACCTATCCGAACACCACCCAAAT
GCCCACCTCTACACGTCCCATCACCACTTACACGCGTTTTTCACGCGTTGAAAATCACCTCCACC
AACATGCCTCCCCCGATACCCAAGTCGCTCGAGAGCCACCCAGCGCACCAGTTGAGCATCGGGCT
GCCCGAGATGGTGGCGTCGCTTGCCAGGCTCCACCCGGTGACGCTTCCCAACCACGGCAGTCTCC
AGACCGACGCCCTCGTGGCGTTGCGGACGCTGCCCACCTACATCTACGTGGTGCTGTGGTTGTAC
CAGTGTCGCGGCTACATCAAGCTCCACAACGAGTACTTTGACGTGGACATCTTTGAGCTCGAGTT
GTTGGACCATTTTCCCCTGACCACCTACCTCATGTCGCTGGCAGACTACGATGCCGACGCTCCGA
ACAACTTGTTCATCACCAAGTTGAAGCTGGCACTCATCACCTGTT
Found at i:279283 original size:24 final size:24
Alignment explanation
Indices: 279256--279322 Score: 77
Period size: 24 Copynumber: 2.8 Consensus size: 24
279246 AACCAAACCA
*
279256 ACCACACAAT-ACACCACACATTAC
1 ACCACACAATCA-ACCACACACTAC
279280 ACCACACAATCAACCACACACTAC
1 ACCACACAATCAACCACACACTAC
*
279304 ACAACTAC-A-CAACCACACA
1 ACCAC-ACAATCAACCACACA
279323 ACCATCCACA
Statistics
Matches: 39, Mismatches: 2, Indels: 5
0.85 0.04 0.11
Matches are distributed among these distances:
23 10 0.26
24 26 0.67
25 3 0.08
ACGTcount: A:0.48, C:0.43, G:0.00, T:0.09
Consensus pattern (24 bp):
ACCACACAATCAACCACACACTAC
Left flanking sequence: Indices 278756 -- 279255
TACGGCTAACCCCGCCGGGTAATGTGGGACGGGGGTCAAGTGGAACCGATGGAAGGTTTGGTGTA
TTGTCTCGGTTTTGTATTTTTTGTGGAATCTTGCCCAATTTGGGGAGAAAGTGGTTGTAGCAGGG
AGGAACGGTGTGGAACTCGCGTGGACGAGTGGCGTGAGACATAGTGTTGGAATGTTTCTAGTGTC
AATTGGGTTTCATAATAATGGAGGTTGGAGGGGTGATAGTCTTCCAGCCAATAGATTACACGCAT
ATGGGTGACTAAGCCATGGTTCATCTGAGTATGAGCCCTCTTCTGAATCAACGCAAGAACTGCAA
ACAATGTCACATTCCTTTCATACCAATTCTTCTCTCTTCATGTACACTCTTACTCTACACTCTTT
CTCTACACTCTTCCTAAACTCTCCTCTACACTCTATTCAAAGACATTCCGAGCTCTTTCCGCGGA
TCACCACAACCCACCAAACAATACCCCAGTAGGACAACCAAACCA
Right flanking sequence: Indices 279323 -- 279822
ACCATCCACACCACCCAACCACACCACCTATCCGAACACCACCCAAATGCCCACCTCTACACGTC
CCATCACCACTTACACGCGTTTTTCACGCGTTGAAAATCACCTCCACCAACATGCCTCCCCCGAT
ACCCAAGTCGCTCGAGAGCCACCCAGCGCACCAGTTGAGCATCGGGCTGCCCGAGATGGTGGCGT
CGCTTGCCAGGCTCCACCCGGTGACGCTTCCCAACCACGGCAGTCTCCAGACCGACGCCCTCGTG
GCGTTGCGGACGCTGCCCACCTACATCTACGTGGTGCTGTGGTTGTACCAGTGTCGCGGCTACAT
CAAGCTCCACAACGAGTACTTTGACGTGGACATCTTTGAGCTCGAGTTGTTGGACCATTTTCCCC
TGACCACCTACCTCATGTCGCTGGCAGACTACGATGCCGACGCTCCGAACAACTTGTTCATCACC
AAGTTGAAGCTGGCACTCATCACCTGTTTGCAGCAGCAGAAGTTG
Found at i:279312 original size:8 final size:8
Alignment explanation
Indices: 279290--279346 Score: 55
Period size: 8 Copynumber: 7.1 Consensus size: 8
279280 ACCACACAAT
279290 CAACCACA
1 CAACCACA
*
279298 C-ACTACA
1 CAACCACA
*
279305 CAACTACA
1 CAACCACA
279313 CAACCACA
1 CAACCACA
279321 CAACCATC-
1 CAACCA-CA
*
279329 CACACCACC
1 CA-ACCACA
279338 CAACCACA
1 CAACCACA
279346 C
1 C
279347 CACCTATCCG
Statistics
Matches: 42, Mismatches: 3, Indels: 8
0.79 0.06 0.15
Matches are distributed among these distances:
7 6 0.14
8 29 0.69
9 7 0.17
ACGTcount: A:0.44, C:0.51, G:0.00, T:0.05
Consensus pattern (8 bp):
CAACCACA
Left flanking sequence: Indices 278790 -- 279289
GTCAAGTGGAACCGATGGAAGGTTTGGTGTATTGTCTCGGTTTTGTATTTTTTGTGGAATCTTGC
CCAATTTGGGGAGAAAGTGGTTGTAGCAGGGAGGAACGGTGTGGAACTCGCGTGGACGAGTGGCG
TGAGACATAGTGTTGGAATGTTTCTAGTGTCAATTGGGTTTCATAATAATGGAGGTTGGAGGGGT
GATAGTCTTCCAGCCAATAGATTACACGCATATGGGTGACTAAGCCATGGTTCATCTGAGTATGA
GCCCTCTTCTGAATCAACGCAAGAACTGCAAACAATGTCACATTCCTTTCATACCAATTCTTCTC
TCTTCATGTACACTCTTACTCTACACTCTTTCTCTACACTCTTCCTAAACTCTCCTCTACACTCT
ATTCAAAGACATTCCGAGCTCTTTCCGCGGATCACCACAACCCACCAAACAATACCCCAGTAGGA
CAACCAAACCAACCACACAATACACCACACATTACACCACACAAT
Right flanking sequence: Indices 279347 -- 279846
CACCTATCCGAACACCACCCAAATGCCCACCTCTACACGTCCCATCACCACTTACACGCGTTTTT
CACGCGTTGAAAATCACCTCCACCAACATGCCTCCCCCGATACCCAAGTCGCTCGAGAGCCACCC
AGCGCACCAGTTGAGCATCGGGCTGCCCGAGATGGTGGCGTCGCTTGCCAGGCTCCACCCGGTGA
CGCTTCCCAACCACGGCAGTCTCCAGACCGACGCCCTCGTGGCGTTGCGGACGCTGCCCACCTAC
ATCTACGTGGTGCTGTGGTTGTACCAGTGTCGCGGCTACATCAAGCTCCACAACGAGTACTTTGA
CGTGGACATCTTTGAGCTCGAGTTGTTGGACCATTTTCCCCTGACCACCTACCTCATGTCGCTGG
CAGACTACGATGCCGACGCTCCGAACAACTTGTTCATCACCAAGTTGAAGCTGGCACTCATCACC
TGTTTGCAGCAGCAGAAGTTGTCGCTGTTGGCCAACTTTGAGCGG
Found at i:279341 original size:25 final size:27
Alignment explanation
Indices: 279313--279368 Score: 80
Period size: 25 Copynumber: 2.1 Consensus size: 27
279303 CACAACTACA
279313 CAACCACACAACC-ATCC-ACACCACC
1 CAACCACACAACCTATCCAACACCACC
*
279338 CAACCACACCACCTATCCGAACACCACC
1 CAACCACACAACCTATCC-AACACCACC
279366 CAA
1 CAA
279369 ATGCCCACCT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
25 12 0.44
26 4 0.15
28 11 0.41
ACGTcount: A:0.39, C:0.54, G:0.02, T:0.05
Consensus pattern (27 bp):
CAACCACACAACCTATCCAACACCACC
Left flanking sequence: Indices 278813 -- 279312
TTGGTGTATTGTCTCGGTTTTGTATTTTTTGTGGAATCTTGCCCAATTTGGGGAGAAAGTGGTTG
TAGCAGGGAGGAACGGTGTGGAACTCGCGTGGACGAGTGGCGTGAGACATAGTGTTGGAATGTTT
CTAGTGTCAATTGGGTTTCATAATAATGGAGGTTGGAGGGGTGATAGTCTTCCAGCCAATAGATT
ACACGCATATGGGTGACTAAGCCATGGTTCATCTGAGTATGAGCCCTCTTCTGAATCAACGCAAG
AACTGCAAACAATGTCACATTCCTTTCATACCAATTCTTCTCTCTTCATGTACACTCTTACTCTA
CACTCTTTCTCTACACTCTTCCTAAACTCTCCTCTACACTCTATTCAAAGACATTCCGAGCTCTT
TCCGCGGATCACCACAACCCACCAAACAATACCCCAGTAGGACAACCAAACCAACCACACAATAC
ACCACACATTACACCACACAATCAACCACACACTACACAACTACA
Right flanking sequence: Indices 279369 -- 279868
ATGCCCACCTCTACACGTCCCATCACCACTTACACGCGTTTTTCACGCGTTGAAAATCACCTCCA
CCAACATGCCTCCCCCGATACCCAAGTCGCTCGAGAGCCACCCAGCGCACCAGTTGAGCATCGGG
CTGCCCGAGATGGTGGCGTCGCTTGCCAGGCTCCACCCGGTGACGCTTCCCAACCACGGCAGTCT
CCAGACCGACGCCCTCGTGGCGTTGCGGACGCTGCCCACCTACATCTACGTGGTGCTGTGGTTGT
ACCAGTGTCGCGGCTACATCAAGCTCCACAACGAGTACTTTGACGTGGACATCTTTGAGCTCGAG
TTGTTGGACCATTTTCCCCTGACCACCTACCTCATGTCGCTGGCAGACTACGATGCCGACGCTCC
GAACAACTTGTTCATCACCAAGTTGAAGCTGGCACTCATCACCTGTTTGCAGCAGCAGAAGTTGT
CGCTGTTGGCCAACTTTGAGCGGGTGGTGCGCCTGTGGTTCGGGG
Found at i:279346 original size:13 final size:13
Alignment explanation
Indices: 279313--279350 Score: 51
Period size: 13 Copynumber: 3.0 Consensus size: 13
279303 CACAACTACA
*
279313 CAACCACA-CAAC
1 CAACCACACCACC
*
279325 CATCCACACCACC
1 CAACCACACCACC
279338 CAACCACACCACC
1 CAACCACACCACC
279351 TATCCGAACA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
12 7 0.32
13 15 0.68
ACGTcount: A:0.39, C:0.58, G:0.00, T:0.03
Consensus pattern (13 bp):
CAACCACACCACC
Left flanking sequence: Indices 278813 -- 279312
TTGGTGTATTGTCTCGGTTTTGTATTTTTTGTGGAATCTTGCCCAATTTGGGGAGAAAGTGGTTG
TAGCAGGGAGGAACGGTGTGGAACTCGCGTGGACGAGTGGCGTGAGACATAGTGTTGGAATGTTT
CTAGTGTCAATTGGGTTTCATAATAATGGAGGTTGGAGGGGTGATAGTCTTCCAGCCAATAGATT
ACACGCATATGGGTGACTAAGCCATGGTTCATCTGAGTATGAGCCCTCTTCTGAATCAACGCAAG
AACTGCAAACAATGTCACATTCCTTTCATACCAATTCTTCTCTCTTCATGTACACTCTTACTCTA
CACTCTTTCTCTACACTCTTCCTAAACTCTCCTCTACACTCTATTCAAAGACATTCCGAGCTCTT
TCCGCGGATCACCACAACCCACCAAACAATACCCCAGTAGGACAACCAAACCAACCACACAATAC
ACCACACATTACACCACACAATCAACCACACACTACACAACTACA
Right flanking sequence: Indices 279351 -- 279850
TATCCGAACACCACCCAAATGCCCACCTCTACACGTCCCATCACCACTTACACGCGTTTTTCACG
CGTTGAAAATCACCTCCACCAACATGCCTCCCCCGATACCCAAGTCGCTCGAGAGCCACCCAGCG
CACCAGTTGAGCATCGGGCTGCCCGAGATGGTGGCGTCGCTTGCCAGGCTCCACCCGGTGACGCT
TCCCAACCACGGCAGTCTCCAGACCGACGCCCTCGTGGCGTTGCGGACGCTGCCCACCTACATCT
ACGTGGTGCTGTGGTTGTACCAGTGTCGCGGCTACATCAAGCTCCACAACGAGTACTTTGACGTG
GACATCTTTGAGCTCGAGTTGTTGGACCATTTTCCCCTGACCACCTACCTCATGTCGCTGGCAGA
CTACGATGCCGACGCTCCGAACAACTTGTTCATCACCAAGTTGAAGCTGGCACTCATCACCTGTT
TGCAGCAGCAGAAGTTGTCGCTGTTGGCCAACTTTGAGCGGGTGG
Found at i:281800 original size:14 final size:14
Alignment explanation
Indices: 281726--281805 Score: 106
Period size: 14 Copynumber: 5.7 Consensus size: 14
281716 AGCTACAAAA
281726 AGGGTTAGCTAAAG
1 AGGGTTAGCTAAAG
** *
281740 AGGGGAAGCTTAAG
1 AGGGTTAGCTAAAG
281754 AGGGTTAGCTAAAG
1 AGGGTTAGCTAAAG
** *
281768 AGGGGAAGCTTAAG
1 AGGGTTAGCTAAAG
281782 AGGGTTAGCTAAAG
1 AGGGTTAGCTAAAG
281796 AGGGTTAGCT
1 AGGGTTAGCT
281806 TCAATGGAGG
Statistics
Matches: 54, Mismatches: 12, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
14 54 1.00
ACGTcount: A:0.34, C:0.07, G:0.39, T:0.20
Consensus pattern (14 bp):
AGGGTTAGCTAAAG
Left flanking sequence: Indices 281226 -- 281725
GTGGGTGTTGCGGACGGTGCTAGGGTCTGCCAGGGTAGCGTGGAGAGTGTCCAAGGGTCTGTTTC
GATTCATGCAAGTGAAGCCGACACGGAATTCGGAGAGGAACGGCGGAGGAGATGCAGGGTGGTTG
GTTCACGAGAAGGAATTGTGGAGTAGATGTGTCAGGGGTGGGAACACGGAACGGGTTCGCTCAGG
GGTGACTTTTAGGTACTCGCCAGTACTTGATCCCGCGTGTAGACACGTCCACGTGCGTTAGTTAG
CATGTCTTAGTGGAATTCGGAGTATGTCAATTTTTACCAGGTATCTTGTAGAAACAAAAGCTGAT
GATGTCACCGGCAGCGTTCACACGATTGACGTTGCGGGGCTCATTAGGATCCACCTGCTTTGTAT
TCGGTCGAGTGTTTGGTTGAGAACCAGCCAGCATGCCCACCAGCCAACCAGCCAGCCAGCCAGCT
TACGCAAAGTACCACCGCAAACTGGTTGAAATAAAAGCTACAAAA
Right flanking sequence: Indices 281806 -- 282305
TCAATGGAGGGAAGTTCGGTATGTTTTGAAAGGTGTCATGGAAGCTTCCCGCGTTCAATTGGTGG
AAAGCTTCGCCGTGCCACGACCTTCCAACCCTGCAGAACCTCGAATCCCATCGGGCCTCCACAAT
GGACCGTTTTGTAACACATCTTTGTTGGGCTTCGCTAGGTCTACACAAAACAGGGCTTAGTTCGT
ATATCTGCATGCGATGCGTTCGGATCCCCACTAGTCAGACTAGCCGCTCTAGACCCAGGGGTACT
GCCGATCGGGTTGGCTGGGTTATTGTAGGGTGGTGGTGGCAGTTCGTTGGAGGTAGCAAACGCGG
AACCGATCCAACAATTGAGCAGCAAACGTGGAAACTGATCCAGCAATTGAGCAGTCAGTTGCACG
CGAGGAACTACTATGACTTAGCCAGCACCGCCCATTTCGGGGTCCATTGAGCAACAGCGACGAAG
CTAACTCTAAAGATTCTGTAGACGACACCACGTATCGTTCTACAC
Found at i:281806 original size:28 final size:28
Alignment explanation
Indices: 281726--281799 Score: 148
Period size: 28 Copynumber: 2.6 Consensus size: 28
281716 AGCTACAAAA
281726 AGGGTTAGCTAAAGAGGGGAAGCTTAAG
1 AGGGTTAGCTAAAGAGGGGAAGCTTAAG
281754 AGGGTTAGCTAAAGAGGGGAAGCTTAAG
1 AGGGTTAGCTAAAGAGGGGAAGCTTAAG
281782 AGGGTTAGCTAAAGAGGG
1 AGGGTTAGCTAAAGAGGG
281800 TTAGCTTCAA
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 46 1.00
ACGTcount: A:0.35, C:0.07, G:0.41, T:0.18
Consensus pattern (28 bp):
AGGGTTAGCTAAAGAGGGGAAGCTTAAG
Left flanking sequence: Indices 281226 -- 281725
GTGGGTGTTGCGGACGGTGCTAGGGTCTGCCAGGGTAGCGTGGAGAGTGTCCAAGGGTCTGTTTC
GATTCATGCAAGTGAAGCCGACACGGAATTCGGAGAGGAACGGCGGAGGAGATGCAGGGTGGTTG
GTTCACGAGAAGGAATTGTGGAGTAGATGTGTCAGGGGTGGGAACACGGAACGGGTTCGCTCAGG
GGTGACTTTTAGGTACTCGCCAGTACTTGATCCCGCGTGTAGACACGTCCACGTGCGTTAGTTAG
CATGTCTTAGTGGAATTCGGAGTATGTCAATTTTTACCAGGTATCTTGTAGAAACAAAAGCTGAT
GATGTCACCGGCAGCGTTCACACGATTGACGTTGCGGGGCTCATTAGGATCCACCTGCTTTGTAT
TCGGTCGAGTGTTTGGTTGAGAACCAGCCAGCATGCCCACCAGCCAACCAGCCAGCCAGCCAGCT
TACGCAAAGTACCACCGCAAACTGGTTGAAATAAAAGCTACAAAA
Right flanking sequence: Indices 281800 -- 282299
TTAGCTTCAATGGAGGGAAGTTCGGTATGTTTTGAAAGGTGTCATGGAAGCTTCCCGCGTTCAAT
TGGTGGAAAGCTTCGCCGTGCCACGACCTTCCAACCCTGCAGAACCTCGAATCCCATCGGGCCTC
CACAATGGACCGTTTTGTAACACATCTTTGTTGGGCTTCGCTAGGTCTACACAAAACAGGGCTTA
GTTCGTATATCTGCATGCGATGCGTTCGGATCCCCACTAGTCAGACTAGCCGCTCTAGACCCAGG
GGTACTGCCGATCGGGTTGGCTGGGTTATTGTAGGGTGGTGGTGGCAGTTCGTTGGAGGTAGCAA
ACGCGGAACCGATCCAACAATTGAGCAGCAAACGTGGAAACTGATCCAGCAATTGAGCAGTCAGT
TGCACGCGAGGAACTACTATGACTTAGCCAGCACCGCCCATTTCGGGGTCCATTGAGCAACAGCG
ACGAAGCTAACTCTAAAGATTCTGTAGACGACACCACGTATCGTT
Found at i:282155 original size:31 final size:32
Alignment explanation
Indices: 282120--282184 Score: 96
Period size: 32 Copynumber: 2.1 Consensus size: 32
282110 CGTTGGAGGT
282120 AGCAAACGCGG-AACCGATCCAACAATTGAGC
1 AGCAAACGCGGAAACCGATCCAACAATTGAGC
* * *
282151 AGCAAACGTGGAAACTGATCCAGCAATTGAGC
1 AGCAAACGCGGAAACCGATCCAACAATTGAGC
282183 AG
1 AG
282185 TCAGTTGCAC
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
31 10 0.33
32 20 0.67
ACGTcount: A:0.38, C:0.25, G:0.25, T:0.12
Consensus pattern (32 bp):
AGCAAACGCGGAAACCGATCCAACAATTGAGC
Left flanking sequence: Indices 281620 -- 282119
TCGAGTGTTTGGTTGAGAACCAGCCAGCATGCCCACCAGCCAACCAGCCAGCCAGCCAGCTTACG
CAAAGTACCACCGCAAACTGGTTGAAATAAAAGCTACAAAAAGGGTTAGCTAAAGAGGGGAAGCT
TAAGAGGGTTAGCTAAAGAGGGGAAGCTTAAGAGGGTTAGCTAAAGAGGGTTAGCTTCAATGGAG
GGAAGTTCGGTATGTTTTGAAAGGTGTCATGGAAGCTTCCCGCGTTCAATTGGTGGAAAGCTTCG
CCGTGCCACGACCTTCCAACCCTGCAGAACCTCGAATCCCATCGGGCCTCCACAATGGACCGTTT
TGTAACACATCTTTGTTGGGCTTCGCTAGGTCTACACAAAACAGGGCTTAGTTCGTATATCTGCA
TGCGATGCGTTCGGATCCCCACTAGTCAGACTAGCCGCTCTAGACCCAGGGGTACTGCCGATCGG
GTTGGCTGGGTTATTGTAGGGTGGTGGTGGCAGTTCGTTGGAGGT
Right flanking sequence: Indices 282185 -- 282684
TCAGTTGCACGCGAGGAACTACTATGACTTAGCCAGCACCGCCCATTTCGGGGTCCATTGAGCAA
CAGCGACGAAGCTAACTCTAAAGATTCTGTAGACGACACCACGTATCGTTCTACACAACTGCTAC
ATCACCCTCATCACATTACCCCTTACCATAACCACACAAAAATCACCCTTTACCGCATTTCATCC
CTTACCACTGTAACATTGTATTACCACTCCCCGTTTCACCCCCTGTGCACACATTCCCGTTTCCC
GCCCTCCCCATTGGCTCCATTCCCAACCAGCCACGCCGTTGACGTCTCAGACACTGTGGCTTAGC
TCGGGCGCACGGTGCGTCCGGTCGCGTCGCATCGTGCTCTTCATCCCCGGCTAATGGATCTGTCC
TGCTGCGCCCACCATCGCTTACGCCCCTGTTGCTTGCGCCATGCCTAGCCGGGGGTGCGGCTGAC
TCGTCCACCGCAGTTCCCGCCAGCCAAAAACACAAAAACCACCTC
Found at i:283865 original size:30 final size:30
Alignment explanation
Indices: 283818--283921 Score: 136
Period size: 30 Copynumber: 3.5 Consensus size: 30
283808 GGCGATGCTC
* *
283818 AACCTGGCCCAGTCCGGGCACCCAACCCAA
1 AACCAGGCCCAGCCCGGGCACCCAACCCAA
*
283848 AACCAGGCTCAGCCCGGGCACCCAACCCAA
1 AACCAGGCCCAGCCCGGGCACCCAACCCAA
* * * *
283878 AACCAGGCCCAACCCGGACAACCAACGCAA
1 AACCAGGCCCAGCCCGGGCACCCAACCCAA
*
283908 AACCTGGCCCAGCC
1 AACCAGGCCCAGCC
283922 ATTGCAAAAC
Statistics
Matches: 64, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 64 1.00
ACGTcount: A:0.31, C:0.46, G:0.19, T:0.04
Consensus pattern (30 bp):
AACCAGGCCCAGCCCGGGCACCCAACCCAA
Left flanking sequence: Indices 283318 -- 283817
ACCACTATCTTCCTCCCTCTGGTTTGCAGCCCGCGGCCGCCCCTGATCAGACGCGTTTAATTGCC
AGCGTTTGCGTAGTGCACACAGCCCGCGGGCGTCTGCCCAAAACGCTATTGAAATCAAGGTTTTT
GTCGCTCATTCCCTCACCCCAGACGGCTGCTACCACAATGAACGAGGGCGCACGCACCCACCCGC
ACCAGGGCGCCGGGTCCCACTACTCGGTGTCGCTGCTGGTGTACCTGGTGGGGGACGACGAGTTC
AACTTCGACGAACAGCCGCTTGCCCGCGACCCGGTGATGATGGACAACATCGAGGAGGAGGAGGA
GGTGGTGGAGGAGGAGGCTCCGAAGGTGGACGCCTACGCCACCACGATGGCTCGGGCCGCGGCCA
ACGGCGACCTTCCGCCGGCTGACCCGCACCCGCAGGACACCATTCCCCCCACCGCTCCCCAGACG
CTCGCCCATGCCCAGTACCAGGCCCAGCCCGGGCAGGCGATGCTC
Right flanking sequence: Indices 283922 -- 284421
ATTGCAAAACCAGGCCCAGCCAATGCAGAACCAGGCCCAGTTAACCCAAAATCTGGGCCAGCCAA
CGCAAAACGCCCAACCCGGGCAGACCACGCAAAACATGGCCCCCTCCGAGCTCAACTCCAAGTTC
CAGCGGCTCCTGATGACCCTCCAGCAGCTGAAAACCAACAACCGCTCGCAGGCGTTCATGCTGAA
CTTCCAGCTGAACGTGGACAAGGCCGCGGCCGAGTACGACGGCGAACGCGACAAGCGCGCGCTGT
ACTACCTGCGGATCCACCGCCCGCCGCTGGACGAGGCCCTGCTGGTGCTGCTGGCGGAACTGGCC
CCCCAGCCCACCAGCCAGCCCCAGCCTCCGCTGCCCACGACGCCGCTGCCCGAGGTGCCGGTGCG
CCAGGACCTCGTGGCCAAGTACGAGCAGTTGCAGACCACCGACGCCCAGGTGCTGGCCCGTGACG
CCAACGACTTGTACATTGGCGGTGCTGCCGGGCTGGCGCTCACGC
Found at i:283992 original size:21 final size:21
Alignment explanation
Indices: 283899--283994 Score: 93
Period size: 21 Copynumber: 4.6 Consensus size: 21
283889 ACCCGGACAA
*
283899 CCAACGCAAAACCTGGCCCAG
1 CCAACGCAAAACCAGGCCCAG
**
283920 CCATTGCAAAACCAGGCCCAG
1 CCAACGCAAAACCAGGCCCAG
* *
283941 CCAATGCAGAACCAGGCCCAG
1 CCAACGCAAAACCAGGCCCAG
** * * * *
283962 TTAACCCAAAATCTGGGCCAG
1 CCAACGCAAAACCAGGCCCAG
283983 CCAACGCAAAAC
1 CCAACGCAAAAC
283995 GCCCAACCCG
Statistics
Matches: 58, Mismatches: 17, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
21 58 1.00
ACGTcount: A:0.35, C:0.38, G:0.19, T:0.08
Consensus pattern (21 bp):
CCAACGCAAAACCAGGCCCAG
Left flanking sequence: Indices 283399 -- 283898
ACACAGCCCGCGGGCGTCTGCCCAAAACGCTATTGAAATCAAGGTTTTTGTCGCTCATTCCCTCA
CCCCAGACGGCTGCTACCACAATGAACGAGGGCGCACGCACCCACCCGCACCAGGGCGCCGGGTC
CCACTACTCGGTGTCGCTGCTGGTGTACCTGGTGGGGGACGACGAGTTCAACTTCGACGAACAGC
CGCTTGCCCGCGACCCGGTGATGATGGACAACATCGAGGAGGAGGAGGAGGTGGTGGAGGAGGAG
GCTCCGAAGGTGGACGCCTACGCCACCACGATGGCTCGGGCCGCGGCCAACGGCGACCTTCCGCC
GGCTGACCCGCACCCGCAGGACACCATTCCCCCCACCGCTCCCCAGACGCTCGCCCATGCCCAGT
ACCAGGCCCAGCCCGGGCAGGCGATGCTCAACCTGGCCCAGTCCGGGCACCCAACCCAAAACCAG
GCTCAGCCCGGGCACCCAACCCAAAACCAGGCCCAACCCGGACAA
Right flanking sequence: Indices 283995 -- 284494
GCCCAACCCGGGCAGACCACGCAAAACATGGCCCCCTCCGAGCTCAACTCCAAGTTCCAGCGGCT
CCTGATGACCCTCCAGCAGCTGAAAACCAACAACCGCTCGCAGGCGTTCATGCTGAACTTCCAGC
TGAACGTGGACAAGGCCGCGGCCGAGTACGACGGCGAACGCGACAAGCGCGCGCTGTACTACCTG
CGGATCCACCGCCCGCCGCTGGACGAGGCCCTGCTGGTGCTGCTGGCGGAACTGGCCCCCCAGCC
CACCAGCCAGCCCCAGCCTCCGCTGCCCACGACGCCGCTGCCCGAGGTGCCGGTGCGCCAGGACC
TCGTGGCCAAGTACGAGCAGTTGCAGACCACCGACGCCCAGGTGCTGGCCCGTGACGCCAACGAC
TTGTACATTGGCGGTGCTGCCGGGCTGGCGCTCACGCCGCAGGCGGCCCGGCCCGACGACGAGTT
GCTGGACCTGGGCCTGCTGTTTGGCGACGACGACGACGACTTGCT
Found at i:294153 original size:16 final size:16
Alignment explanation
Indices: 294121--294176 Score: 62
Period size: 16 Copynumber: 3.5 Consensus size: 16
294111 CGCCTATCCC
*
294121 CTACCATCCCCTCTCTT
1 CTACCA-CCCTTCTCTT
294138 CTACCACCCTTCTCTT
1 CTACCACCCTTCTCTT
*
294154 CTTCCACCCATTC-C-T
1 CTACCACCC-TTCTCTT
294169 CTACCACC
1 CTACCACC
294177 TCTGTTCCAA
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
15 8 0.23
16 18 0.51
17 9 0.26
ACGTcount: A:0.14, C:0.54, G:0.00, T:0.32
Consensus pattern (16 bp):
CTACCACCCTTCTCTT
Left flanking sequence: Indices 293621 -- 294120
CTGGAACTGGTTCACTAGCTGGTGGGTTCGGGTAAACGACATGGAGATGGGGGTGTATGGGGTAG
GAGCGGTTTGTGCGGGAAAAGTGAAGGTTCAGGGGTGTTGTGGTGGTCTTCAGGTGGTTCTTAGT
GGTTTCTGATAAGCTTCTGGTGGGGTGTGTGGTTGTGGATGGCCTTCTGGCGGTGCCGGCCTTGC
GAGTGAGATTTGTTGCGTTGGATGCATAGTGCGATAGAGGTGGTGGCGGGTGGGGATAGGGTGTC
GCGTGGGGGTTAGACGGGCTTGAGAGAGGTGCTTGGGAGCTAGGAGGGTATGCCTTTTGAATTGT
TGACCCAATGTGTGGTGGTTATGTTTTTAGTTGAGGTATCTATCTGTGTAGTGACTGTCTGTGCA
GTGTGAGTTTGTAGACAACCAAAACCAGGGCCGGTGCCAAAAAAGACTACAGTACCTACGCTTAC
TGAGGGTTTGAGCCAACTCTCTACAAAATTCAACTCGCCTATCCC
Right flanking sequence: Indices 294177 -- 294676
TCTGTTCCAAACCGCACGAGACCACCAAGCAAAACCTAGAACCACACCACAAACACCCACACGTA
GAAAAACGACCATCTACACCTGTACCCTTCTAGCACCATCCACCCACACACACACCCCCTTTCCA
CCTCCTCGTTCCCGGACTCCTGCCTACACTCCTGCTGCATAGTGGCGAAAATCAACGCGCTTACC
CAGTTCCTGTGCAATTGGCCTTCCAACCCATAAACCATGTCACGCCGATACGACTCGCGAACCAC
CATCTTCTCCCCCGAGGGCCGTCTCTACCAGGTGGAGTACGCGCAAGAGGCCATTTCCAACGCCG
GAACCGCGCTTGGGATCCTCCTGAAGGAGGGTGTGGTTCTTGCCTGTGAAAAGAAGGTGACACTG
AAGCTTTTGGACAACGACGGGCTGGCGGAGAAATTGTACGTTGTCGACGACCACATGGTGGTGGC
CGTTGCTGGGATGACCGCTGACGCCACCATTCTCGTCAACAACGC
Found at i:295309 original size:10 final size:10
Alignment explanation
Indices: 295279--295327 Score: 62
Period size: 10 Copynumber: 4.7 Consensus size: 10
295269 TAGTGCGGAC
295279 GTGGTGGTGAA
1 GTGGTGGT-AA
*
295290 TTGGTGGTAA
1 GTGGTGGTAA
*
295300 GTGGTCGTAA
1 GTGGTGGTAA
295310 GTGGTGGTGAA
1 GTGGTGGT-AA
295321 GTGGTGG
1 GTGGTGG
295328 ATGGTATGAG
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
10 17 0.52
11 16 0.48
ACGTcount: A:0.16, C:0.02, G:0.51, T:0.31
Consensus pattern (10 bp):
GTGGTGGTAA
Left flanking sequence: Indices 294779 -- 295278
CGGTGGGTTGCGTCCGTTCGGTGTGTCTTTCCTCTACGCCGGCTACGACGACCGCTACGAGTTCC
AGTTGTACCTGCTGAACCCGTCGGGCAACTTTTCTGGGTGGCGTGCCACTTCGATCGGGGCCAAC
AACCTGGCTGCGCAGACGCTTTTGAAGAAGGACTACTCTGACGACATCGGGTTGAAGGATGCGTG
CTTGTTGGCGGTCAAGGTGCTTCTGAAAACCATGGACCTGCTGAACTTGAACTCGGACAAGGTGG
AGTTTGCCACGTTGCTGATGGGCAAGGACGGCAAGCCCTTGCATAAGTTGTGGCTGGCCAAGGAC
ATCGACGCCCTTATTAAGGACCTGGGGGTGTTGGACGAGAAGGACAGCGAGGAGTAATGAATACA
TGATATGATAGAGAATGCGGTGTGGGCGGTAGTTTGTAATTTTGACAGAAGAGTAATTCTTGAGT
GGTGGCGTAAGTAATTGTTTAGCAGTGTGGTGAAGTAGTGCGGAC
Right flanking sequence: Indices 295328 -- 295827
ATGGTATGAGCCCTGATGCCAGTGGCGTCTGCTTACCAAATGTGAGACATCCCACCCAGCCGTTG
AAGCTGTAATTACGTGCAGGGTCCCGGCTTAGGTGTAATTGTCGGGAATAGCTGGTGTGGGTGGC
TAGAGTCGGTCAAGGGCTAGTACTTGAACATTCACTCTCTTTGAGTGTAGTGATTATATAAAGTT
GAATACAGAGTAACAGAGTACGTGAGTTGGAAGAGACACACAATGTCTACGTATTACCTGGTCAG
AGACACAGAAATACCAAAAACAAGGCGATTCTGCTAGCCATTTCCCTTCTTAAGCTAACCCATTC
ATCCCAAAGCCGCGCCATCGCGGCGCTCGTAAATATGCAAATGGCTCAGGTCCCGACACAACCCG
CAAACTGCACCATGCAACGTGTAACTCACACCCACTTTAATCCAACTCCCTCGGAGCCCTTCCTT
ACAACTCTACGCCCCCTTTCCTTATCGTTTCTCCCGGTCCCTTCT
Found at i:296094 original size:12 final size:12
Alignment explanation
Indices: 296077--296114 Score: 58
Period size: 12 Copynumber: 3.2 Consensus size: 12
296067 CTCGGGGGGT
* *
296077 GACCGCGACCGG
1 GACCGCGACAGA
296089 GACCGCGACAGA
1 GACCGCGACAGA
296101 GACCGCGACAGA
1 GACCGCGACAGA
296113 GA
1 GA
296115 ACGTGACCGA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
12 24 1.00
ACGTcount: A:0.29, C:0.34, G:0.37, T:0.00
Consensus pattern (12 bp):
GACCGCGACAGA
Left flanking sequence: Indices 295577 -- 296076
TACCTGGTCAGAGACACAGAAATACCAAAAACAAGGCGATTCTGCTAGCCATTTCCCTTCTTAAG
CTAACCCATTCATCCCAAAGCCGCGCCATCGCGGCGCTCGTAAATATGCAAATGGCTCAGGTCCC
GACACAACCCGCAAACTGCACCATGCAACGTGTAACTCACACCCACTTTAATCCAACTCCCTCGG
AGCCCTTCCTTACAACTCTACGCCCCCTTTCCTTATCGTTTCTCCCGGTCCCTTCTCTCCCTTTC
TCCCTCCACTCCCTGTGTACAACCGCACAGAAAAAATTATAAAAAACAAGACCGTTACACCCAGA
ACCTCCCCACGCTAACAGGCCCACACACGCGCAACCCACGCGAAACCACGCATTAATCCAACCCC
ATACCCACTGAAAGCCCCACTGGACACACCGCCAGCTCTTTCCCACCCATTTCCAGCCCTCCATG
TCGTATAACCGCGGCAGTTCCTACTACGGGCGCTACTCGGGGGGT
Right flanking sequence: Indices 296115 -- 296614
ACGTGACCGAGGAGAGAAGAAGTACGAGGGCAGCTCTGGCAGCAGCCCTGCCGACCGCGACCGCG
ACCGCGACCGAGACCGAGGTTCGTACCGCCGTGACTACTACGGAGGCTACCGAGGCTCAGGCAGC
GCAGGCAGCGCCGGTCTGAGCAGCAGCAACCCGTCGCTGAAGTACTACAAGTACGACCGAGACCG
AGAGCCGCGCGAACGCGACCGCGACCGCGACTCGGGCTCGTTTTACCGGGGAAAGTACGATAGCT
ACCCTGGCAAGCACCATCTGCGGTACGACCTGCGCTACGACAAGTACGAGCGGTACTCTGGCAGC
TCCGGGGGCCGCGAAACCAACACAGACTCGTACAAACCGCGCAAATCCAAGGACCGCGACGGCAA
GCCCAAGGAGCGCGAGGGGAAGCCCAAGGATGGCCGCAGCGACTATGACCGGCGTTCCTCGGGCT
ATGGCGACGACCGCCGACTGCTGGATCCACCGCGCAGACCGCAAG
Found at i:296197 original size:6 final size:6
Alignment explanation
Indices: 296166--296195 Score: 51
Period size: 6 Copynumber: 5.0 Consensus size: 6
296156 GCAGCCCTGC
*
296166 CGACCG CGACCG CGACCG CGACCG AGACCG
1 CGACCG CGACCG CGACCG CGACCG CGACCG
296196 AGGTTCGTAC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.20, C:0.47, G:0.33, T:0.00
Consensus pattern (6 bp):
CGACCG
Left flanking sequence: Indices 295666 -- 296165
GCCATCGCGGCGCTCGTAAATATGCAAATGGCTCAGGTCCCGACACAACCCGCAAACTGCACCAT
GCAACGTGTAACTCACACCCACTTTAATCCAACTCCCTCGGAGCCCTTCCTTACAACTCTACGCC
CCCTTTCCTTATCGTTTCTCCCGGTCCCTTCTCTCCCTTTCTCCCTCCACTCCCTGTGTACAACC
GCACAGAAAAAATTATAAAAAACAAGACCGTTACACCCAGAACCTCCCCACGCTAACAGGCCCAC
ACACGCGCAACCCACGCGAAACCACGCATTAATCCAACCCCATACCCACTGAAAGCCCCACTGGA
CACACCGCCAGCTCTTTCCCACCCATTTCCAGCCCTCCATGTCGTATAACCGCGGCAGTTCCTAC
TACGGGCGCTACTCGGGGGGTGACCGCGACCGGGACCGCGACAGAGACCGCGACAGAGAACGTGA
CCGAGGAGAGAAGAAGTACGAGGGCAGCTCTGGCAGCAGCCCTGC
Right flanking sequence: Indices 296196 -- 296695
AGGTTCGTACCGCCGTGACTACTACGGAGGCTACCGAGGCTCAGGCAGCGCAGGCAGCGCCGGTC
TGAGCAGCAGCAACCCGTCGCTGAAGTACTACAAGTACGACCGAGACCGAGAGCCGCGCGAACGC
GACCGCGACCGCGACTCGGGCTCGTTTTACCGGGGAAAGTACGATAGCTACCCTGGCAAGCACCA
TCTGCGGTACGACCTGCGCTACGACAAGTACGAGCGGTACTCTGGCAGCTCCGGGGGCCGCGAAA
CCAACACAGACTCGTACAAACCGCGCAAATCCAAGGACCGCGACGGCAAGCCCAAGGAGCGCGAG
GGGAAGCCCAAGGATGGCCGCAGCGACTATGACCGGCGTTCCTCGGGCTATGGCGACGACCGCCG
ACTGCTGGATCCACCGCGCAGACCGCAAGCCTCGCTGGGAGAGCGCCGACCGTCCTACGAGGGCC
GTCGTCGCGGCAGTGGAAACAGCATTAAGGAGGAGCACGACGACG
Found at i:296510 original size:21 final size:21
Alignment explanation
Indices: 296486--296534 Score: 71
Period size: 21 Copynumber: 2.3 Consensus size: 21
296476 CCGCGCAAAT
296486 CCAAGGACCGCGACGGCAAGC
1 CCAAGGACCGCGACGGCAAGC
* * *
296507 CCAAGGAGCGCGAGGGGAAGC
1 CCAAGGACCGCGACGGCAAGC
296528 CCAAGGA
1 CCAAGGA
296535 TGGCCGCAGC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.31, C:0.31, G:0.39, T:0.00
Consensus pattern (21 bp):
CCAAGGACCGCGACGGCAAGC
Left flanking sequence: Indices 295986 -- 296485
CTGGACACACCGCCAGCTCTTTCCCACCCATTTCCAGCCCTCCATGTCGTATAACCGCGGCAGTT
CCTACTACGGGCGCTACTCGGGGGGTGACCGCGACCGGGACCGCGACAGAGACCGCGACAGAGAA
CGTGACCGAGGAGAGAAGAAGTACGAGGGCAGCTCTGGCAGCAGCCCTGCCGACCGCGACCGCGA
CCGCGACCGAGACCGAGGTTCGTACCGCCGTGACTACTACGGAGGCTACCGAGGCTCAGGCAGCG
CAGGCAGCGCCGGTCTGAGCAGCAGCAACCCGTCGCTGAAGTACTACAAGTACGACCGAGACCGA
GAGCCGCGCGAACGCGACCGCGACCGCGACTCGGGCTCGTTTTACCGGGGAAAGTACGATAGCTA
CCCTGGCAAGCACCATCTGCGGTACGACCTGCGCTACGACAAGTACGAGCGGTACTCTGGCAGCT
CCGGGGGCCGCGAAACCAACACAGACTCGTACAAACCGCGCAAAT
Right flanking sequence: Indices 296535 -- 297034
TGGCCGCAGCGACTATGACCGGCGTTCCTCGGGCTATGGCGACGACCGCCGACTGCTGGATCCAC
CGCGCAGACCGCAAGCCTCGCTGGGAGAGCGCCGACCGTCCTACGAGGGCCGTCGTCGCGGCAGT
GGAAACAGCATTAAGGAGGAGCACGACGACGAGCGCCGGCGCAGCACGGACGAGGTGCCCAAGGG
CCCGCTGGGAGCGAAGTCCAAGGAGCGCCCGAAGGAGAAACGAGACGGGCGTGATAGTCGCGACG
GTCGAGATGGTCGAGATGGTCGAGATGGTCGTGACGGCCGCGAAAACCGTGAAGTTCGCGAAAAC
CGTGATAAGAGGAAGGAGAAGGGACGGCCAGAGAGACTGGATAGACCGGAAAGGCTGGATAGACC
TGAAAGACTGGATAGACCGGAAAGACTGGATAGACCTGAGCGTCTGGAACTGAAACCTGAGCCGA
GAGATCCCCCCAGAGAGCCCGGTTCTCGCGATATCCTGAGGGTTA
Found at i:296806 original size:9 final size:9
Alignment explanation
Indices: 296794--296825 Score: 64
Period size: 9 Copynumber: 3.6 Consensus size: 9
296784 TAGTCGCGAC
296794 GGTCGAGAT
1 GGTCGAGAT
296803 GGTCGAGAT
1 GGTCGAGAT
296812 GGTCGAGAT
1 GGTCGAGAT
296821 GGTCG
1 GGTCG
296826 TGACGGCCGC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 23 1.00
ACGTcount: A:0.19, C:0.12, G:0.47, T:0.22
Consensus pattern (9 bp):
GGTCGAGAT
Left flanking sequence: Indices 296294 -- 296793
AGTACGACCGAGACCGAGAGCCGCGCGAACGCGACCGCGACCGCGACTCGGGCTCGTTTTACCGG
GGAAAGTACGATAGCTACCCTGGCAAGCACCATCTGCGGTACGACCTGCGCTACGACAAGTACGA
GCGGTACTCTGGCAGCTCCGGGGGCCGCGAAACCAACACAGACTCGTACAAACCGCGCAAATCCA
AGGACCGCGACGGCAAGCCCAAGGAGCGCGAGGGGAAGCCCAAGGATGGCCGCAGCGACTATGAC
CGGCGTTCCTCGGGCTATGGCGACGACCGCCGACTGCTGGATCCACCGCGCAGACCGCAAGCCTC
GCTGGGAGAGCGCCGACCGTCCTACGAGGGCCGTCGTCGCGGCAGTGGAAACAGCATTAAGGAGG
AGCACGACGACGAGCGCCGGCGCAGCACGGACGAGGTGCCCAAGGGCCCGCTGGGAGCGAAGTCC
AAGGAGCGCCCGAAGGAGAAACGAGACGGGCGTGATAGTCGCGAC
Right flanking sequence: Indices 296826 -- 297325
TGACGGCCGCGAAAACCGTGAAGTTCGCGAAAACCGTGATAAGAGGAAGGAGAAGGGACGGCCAG
AGAGACTGGATAGACCGGAAAGGCTGGATAGACCTGAAAGACTGGATAGACCGGAAAGACTGGAT
AGACCTGAGCGTCTGGAACTGAAACCTGAGCCGAGAGATCCCCCCAGAGAGCCCGGTTCTCGCGA
TATCCTGAGGGTTACGTCACGAGAGGTGCCGAAGGAAGTGAAGGACGAGAAGAAGGAGCCTGTTA
AGGAGTCGAAGGAGCCAACGGAGCCCGTTAAGGAGTCAAAGGAGCCTGCCAAGCTACTGGAACCC
AAGGAGCTGCTACGAAAAGCGGACGACCCGAAGGATGCCAAGGATTTGAAGGATGCTAAGGATTT
GAAGGATCCGAAGGCTCCTGTATCAACCGAGTCTGCGAAGTCAAAGCCCTTGGAAGCTACCAAAT
CTGACGTTCTCGACTCGGCTGGCGTTGAGACAACCAAGCCTACTG
Found at i:296807 original size:18 final size:18
Alignment explanation
Indices: 296770--296831 Score: 70
Period size: 18 Copynumber: 3.4 Consensus size: 18
296760 GAAGGAGAAA
* * *
296770 CGAGACGGGCGTGATAGT
1 CGAGACGGTCGAGATGGT
*
296788 CGCGACGGTCGAGATGGT
1 CGAGACGGTCGAGATGGT
*
296806 CGAGATGGTCGAGATGGT
1 CGAGACGGTCGAGATGGT
*
296824 CGTGACGG
1 CGAGACGG
296832 CCGCGAAAAC
Statistics
Matches: 36, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
18 36 1.00
ACGTcount: A:0.19, C:0.18, G:0.45, T:0.18
Consensus pattern (18 bp):
CGAGACGGTCGAGATGGT
Left flanking sequence: Indices 296270 -- 296769
GCAACCCGTCGCTGAAGTACTACAAGTACGACCGAGACCGAGAGCCGCGCGAACGCGACCGCGAC
CGCGACTCGGGCTCGTTTTACCGGGGAAAGTACGATAGCTACCCTGGCAAGCACCATCTGCGGTA
CGACCTGCGCTACGACAAGTACGAGCGGTACTCTGGCAGCTCCGGGGGCCGCGAAACCAACACAG
ACTCGTACAAACCGCGCAAATCCAAGGACCGCGACGGCAAGCCCAAGGAGCGCGAGGGGAAGCCC
AAGGATGGCCGCAGCGACTATGACCGGCGTTCCTCGGGCTATGGCGACGACCGCCGACTGCTGGA
TCCACCGCGCAGACCGCAAGCCTCGCTGGGAGAGCGCCGACCGTCCTACGAGGGCCGTCGTCGCG
GCAGTGGAAACAGCATTAAGGAGGAGCACGACGACGAGCGCCGGCGCAGCACGGACGAGGTGCCC
AAGGGCCCGCTGGGAGCGAAGTCCAAGGAGCGCCCGAAGGAGAAA
Right flanking sequence: Indices 296832 -- 297331
CCGCGAAAACCGTGAAGTTCGCGAAAACCGTGATAAGAGGAAGGAGAAGGGACGGCCAGAGAGAC
TGGATAGACCGGAAAGGCTGGATAGACCTGAAAGACTGGATAGACCGGAAAGACTGGATAGACCT
GAGCGTCTGGAACTGAAACCTGAGCCGAGAGATCCCCCCAGAGAGCCCGGTTCTCGCGATATCCT
GAGGGTTACGTCACGAGAGGTGCCGAAGGAAGTGAAGGACGAGAAGAAGGAGCCTGTTAAGGAGT
CGAAGGAGCCAACGGAGCCCGTTAAGGAGTCAAAGGAGCCTGCCAAGCTACTGGAACCCAAGGAG
CTGCTACGAAAAGCGGACGACCCGAAGGATGCCAAGGATTTGAAGGATGCTAAGGATTTGAAGGA
TCCGAAGGCTCCTGTATCAACCGAGTCTGCGAAGTCAAAGCCCTTGGAAGCTACCAAATCTGACG
TTCTCGACTCGGCTGGCGTTGAGACAACCAAGCCTACTGAGCCTA
Found at i:296919 original size:18 final size:18
Alignment explanation
Indices: 296893--296960 Score: 118
Period size: 18 Copynumber: 3.8 Consensus size: 18
296883 ACGGCCAGAG
296893 AGACTGGATAGACCGGAA
1 AGACTGGATAGACCGGAA
* *
296911 AGGCTGGATAGACCTGAA
1 AGACTGGATAGACCGGAA
296929 AGACTGGATAGACCGGAA
1 AGACTGGATAGACCGGAA
296947 AGACTGGATAGACC
1 AGACTGGATAGACC
296961 TGAGCGTCTG
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 46 1.00
ACGTcount: A:0.37, C:0.18, G:0.32, T:0.13
Consensus pattern (18 bp):
AGACTGGATAGACCGGAA
Left flanking sequence: Indices 296393 -- 296892
TGCGGTACGACCTGCGCTACGACAAGTACGAGCGGTACTCTGGCAGCTCCGGGGGCCGCGAAACC
AACACAGACTCGTACAAACCGCGCAAATCCAAGGACCGCGACGGCAAGCCCAAGGAGCGCGAGGG
GAAGCCCAAGGATGGCCGCAGCGACTATGACCGGCGTTCCTCGGGCTATGGCGACGACCGCCGAC
TGCTGGATCCACCGCGCAGACCGCAAGCCTCGCTGGGAGAGCGCCGACCGTCCTACGAGGGCCGT
CGTCGCGGCAGTGGAAACAGCATTAAGGAGGAGCACGACGACGAGCGCCGGCGCAGCACGGACGA
GGTGCCCAAGGGCCCGCTGGGAGCGAAGTCCAAGGAGCGCCCGAAGGAGAAACGAGACGGGCGTG
ATAGTCGCGACGGTCGAGATGGTCGAGATGGTCGAGATGGTCGTGACGGCCGCGAAAACCGTGAA
GTTCGCGAAAACCGTGATAAGAGGAAGGAGAAGGGACGGCCAGAG
Right flanking sequence: Indices 296961 -- 297460
TGAGCGTCTGGAACTGAAACCTGAGCCGAGAGATCCCCCCAGAGAGCCCGGTTCTCGCGATATCC
TGAGGGTTACGTCACGAGAGGTGCCGAAGGAAGTGAAGGACGAGAAGAAGGAGCCTGTTAAGGAG
TCGAAGGAGCCAACGGAGCCCGTTAAGGAGTCAAAGGAGCCTGCCAAGCTACTGGAACCCAAGGA
GCTGCTACGAAAAGCGGACGACCCGAAGGATGCCAAGGATTTGAAGGATGCTAAGGATTTGAAGG
ATCCGAAGGCTCCTGTATCAACCGAGTCTGCGAAGTCAAAGCCCTTGGAAGCTACCAAATCTGAC
GTTCTCGACTCGGCTGGCGTTGAGACAACCAAGCCTACTGAGCCTACTAAGCCGGAGACCGCTAA
GCTGCTACCGAAGCCCTCCGACGCTGCGCTGGAACAGCCTGTGAAACAGTCCACTGAGGACGCGA
AGCCAGCCAAGGAAGATGAGCCGAGGCCGCTGGTTGAACCGAAGG
Found at i:296941 original size:9 final size:9
Alignment explanation
Indices: 296893--296959 Score: 64
Period size: 9 Copynumber: 7.4 Consensus size: 9
296883 ACGGCCAGAG
296893 AGACTGGAT
1 AGACTGGAT
* *
296902 AGACCGGAA
1 AGACTGGAT
*
296911 AGGCTGGAT
1 AGACTGGAT
*
296920 AGACCT-GAA
1 AGA-CTGGAT
296929 AGACTGGAT
1 AGACTGGAT
* *
296938 AGACCGGAA
1 AGACTGGAT
296947 AGACTGGAT
1 AGACTGGAT
296956 AGAC
1 AGAC
296960 CTGAGCGTCT
Statistics
Matches: 44, Mismatches: 12, Indels: 4
0.73 0.20 0.07
Matches are distributed among these distances:
8 2 0.05
9 40 0.91
10 2 0.05
ACGTcount: A:0.37, C:0.16, G:0.33, T:0.13
Consensus pattern (9 bp):
AGACTGGAT
Left flanking sequence: Indices 296393 -- 296892
TGCGGTACGACCTGCGCTACGACAAGTACGAGCGGTACTCTGGCAGCTCCGGGGGCCGCGAAACC
AACACAGACTCGTACAAACCGCGCAAATCCAAGGACCGCGACGGCAAGCCCAAGGAGCGCGAGGG
GAAGCCCAAGGATGGCCGCAGCGACTATGACCGGCGTTCCTCGGGCTATGGCGACGACCGCCGAC
TGCTGGATCCACCGCGCAGACCGCAAGCCTCGCTGGGAGAGCGCCGACCGTCCTACGAGGGCCGT
CGTCGCGGCAGTGGAAACAGCATTAAGGAGGAGCACGACGACGAGCGCCGGCGCAGCACGGACGA
GGTGCCCAAGGGCCCGCTGGGAGCGAAGTCCAAGGAGCGCCCGAAGGAGAAACGAGACGGGCGTG
ATAGTCGCGACGGTCGAGATGGTCGAGATGGTCGAGATGGTCGTGACGGCCGCGAAAACCGTGAA
GTTCGCGAAAACCGTGATAAGAGGAAGGAGAAGGGACGGCCAGAG
Right flanking sequence: Indices 296960 -- 297459
CTGAGCGTCTGGAACTGAAACCTGAGCCGAGAGATCCCCCCAGAGAGCCCGGTTCTCGCGATATC
CTGAGGGTTACGTCACGAGAGGTGCCGAAGGAAGTGAAGGACGAGAAGAAGGAGCCTGTTAAGGA
GTCGAAGGAGCCAACGGAGCCCGTTAAGGAGTCAAAGGAGCCTGCCAAGCTACTGGAACCCAAGG
AGCTGCTACGAAAAGCGGACGACCCGAAGGATGCCAAGGATTTGAAGGATGCTAAGGATTTGAAG
GATCCGAAGGCTCCTGTATCAACCGAGTCTGCGAAGTCAAAGCCCTTGGAAGCTACCAAATCTGA
CGTTCTCGACTCGGCTGGCGTTGAGACAACCAAGCCTACTGAGCCTACTAAGCCGGAGACCGCTA
AGCTGCTACCGAAGCCCTCCGACGCTGCGCTGGAACAGCCTGTGAAACAGTCCACTGAGGACGCG
AAGCCAGCCAAGGAAGATGAGCCGAGGCCGCTGGTTGAACCGAAG
Found at i:296972 original size:36 final size:36
Alignment explanation
Indices: 296893--296963 Score: 133
Period size: 36 Copynumber: 2.0 Consensus size: 36
296883 ACGGCCAGAG
*
296893 AGACTGGATAGACCGGAAAGGCTGGATAGACCTGAA
1 AGACTGGATAGACCGGAAAGACTGGATAGACCTGAA
296929 AGACTGGATAGACCGGAAAGACTGGATAGACCTGA
1 AGACTGGATAGACCGGAAAGACTGGATAGACCTGA
296964 GCGTCTGGAA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 34 1.00
ACGTcount: A:0.37, C:0.17, G:0.32, T:0.14
Consensus pattern (36 bp):
AGACTGGATAGACCGGAAAGACTGGATAGACCTGAA
Left flanking sequence: Indices 296393 -- 296892
TGCGGTACGACCTGCGCTACGACAAGTACGAGCGGTACTCTGGCAGCTCCGGGGGCCGCGAAACC
AACACAGACTCGTACAAACCGCGCAAATCCAAGGACCGCGACGGCAAGCCCAAGGAGCGCGAGGG
GAAGCCCAAGGATGGCCGCAGCGACTATGACCGGCGTTCCTCGGGCTATGGCGACGACCGCCGAC
TGCTGGATCCACCGCGCAGACCGCAAGCCTCGCTGGGAGAGCGCCGACCGTCCTACGAGGGCCGT
CGTCGCGGCAGTGGAAACAGCATTAAGGAGGAGCACGACGACGAGCGCCGGCGCAGCACGGACGA
GGTGCCCAAGGGCCCGCTGGGAGCGAAGTCCAAGGAGCGCCCGAAGGAGAAACGAGACGGGCGTG
ATAGTCGCGACGGTCGAGATGGTCGAGATGGTCGAGATGGTCGTGACGGCCGCGAAAACCGTGAA
GTTCGCGAAAACCGTGATAAGAGGAAGGAGAAGGGACGGCCAGAG
Right flanking sequence: Indices 296964 -- 297463
GCGTCTGGAACTGAAACCTGAGCCGAGAGATCCCCCCAGAGAGCCCGGTTCTCGCGATATCCTGA
GGGTTACGTCACGAGAGGTGCCGAAGGAAGTGAAGGACGAGAAGAAGGAGCCTGTTAAGGAGTCG
AAGGAGCCAACGGAGCCCGTTAAGGAGTCAAAGGAGCCTGCCAAGCTACTGGAACCCAAGGAGCT
GCTACGAAAAGCGGACGACCCGAAGGATGCCAAGGATTTGAAGGATGCTAAGGATTTGAAGGATC
CGAAGGCTCCTGTATCAACCGAGTCTGCGAAGTCAAAGCCCTTGGAAGCTACCAAATCTGACGTT
CTCGACTCGGCTGGCGTTGAGACAACCAAGCCTACTGAGCCTACTAAGCCGGAGACCGCTAAGCT
GCTACCGAAGCCCTCCGACGCTGCGCTGGAACAGCCTGTGAAACAGTCCACTGAGGACGCGAAGC
CAGCCAAGGAAGATGAGCCGAGGCCGCTGGTTGAACCGAAGGCCG
Found at i:297116 original size:30 final size:30
Alignment explanation
Indices: 297075--297131 Score: 96
Period size: 30 Copynumber: 1.9 Consensus size: 30
297065 ACGAGAAGAA
* *
297075 GGAGCCTGTTAAGGAGTCGAAGGAGCCAAC
1 GGAGCCCGTTAAGGAGTCAAAGGAGCCAAC
297105 GGAGCCCGTTAAGGAGTCAAAGGAGCC
1 GGAGCCCGTTAAGGAGTCAAAGGAGCC
297132 TGCCAAGCTA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.37, T:0.12
Consensus pattern (30 bp):
GGAGCCCGTTAAGGAGTCAAAGGAGCCAAC
Left flanking sequence: Indices 296575 -- 297074
GACGACCGCCGACTGCTGGATCCACCGCGCAGACCGCAAGCCTCGCTGGGAGAGCGCCGACCGTC
CTACGAGGGCCGTCGTCGCGGCAGTGGAAACAGCATTAAGGAGGAGCACGACGACGAGCGCCGGC
GCAGCACGGACGAGGTGCCCAAGGGCCCGCTGGGAGCGAAGTCCAAGGAGCGCCCGAAGGAGAAA
CGAGACGGGCGTGATAGTCGCGACGGTCGAGATGGTCGAGATGGTCGAGATGGTCGTGACGGCCG
CGAAAACCGTGAAGTTCGCGAAAACCGTGATAAGAGGAAGGAGAAGGGACGGCCAGAGAGACTGG
ATAGACCGGAAAGGCTGGATAGACCTGAAAGACTGGATAGACCGGAAAGACTGGATAGACCTGAG
CGTCTGGAACTGAAACCTGAGCCGAGAGATCCCCCCAGAGAGCCCGGTTCTCGCGATATCCTGAG
GGTTACGTCACGAGAGGTGCCGAAGGAAGTGAAGGACGAGAAGAA
Right flanking sequence: Indices 297132 -- 297631
TGCCAAGCTACTGGAACCCAAGGAGCTGCTACGAAAAGCGGACGACCCGAAGGATGCCAAGGATT
TGAAGGATGCTAAGGATTTGAAGGATCCGAAGGCTCCTGTATCAACCGAGTCTGCGAAGTCAAAG
CCCTTGGAAGCTACCAAATCTGACGTTCTCGACTCGGCTGGCGTTGAGACAACCAAGCCTACTGA
GCCTACTAAGCCGGAGACCGCTAAGCTGCTACCGAAGCCCTCCGACGCTGCGCTGGAACAGCCTG
TGAAACAGTCCACTGAGGACGCGAAGCCAGCCAAGGAAGATGAGCCGAGGCCGCTGGTTGAACCG
AAGGCCGCTGGTGAGGAGGCTACCAAGGCGAAGGAGGCTGAGACAAAGGAGGCTACCAAGGTAAA
GGAGGCTACCGACGCGAAGGAGACTACCGAGGCGGAGAAGACTACCGGGGTGAAGGCGTCTACTG
AGGCGAAAAAGGACGCTACTAAGGACACTCAGGATGCTACAAAGC
Found at i:297203 original size:18 final size:18
Alignment explanation
Indices: 297180--297222 Score: 77
Period size: 18 Copynumber: 2.4 Consensus size: 18
297170 CGGACGACCC
297180 GAAGGATGCCAAGGATTT
1 GAAGGATGCCAAGGATTT
*
297198 GAAGGATGCTAAGGATTT
1 GAAGGATGCCAAGGATTT
297216 GAAGGAT
1 GAAGGAT
297223 CCGAAGGCTC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.35, C:0.07, G:0.35, T:0.23
Consensus pattern (18 bp):
GAAGGATGCCAAGGATTT
Left flanking sequence: Indices 296680 -- 297179
GAGGAGCACGACGACGAGCGCCGGCGCAGCACGGACGAGGTGCCCAAGGGCCCGCTGGGAGCGAA
GTCCAAGGAGCGCCCGAAGGAGAAACGAGACGGGCGTGATAGTCGCGACGGTCGAGATGGTCGAG
ATGGTCGAGATGGTCGTGACGGCCGCGAAAACCGTGAAGTTCGCGAAAACCGTGATAAGAGGAAG
GAGAAGGGACGGCCAGAGAGACTGGATAGACCGGAAAGGCTGGATAGACCTGAAAGACTGGATAG
ACCGGAAAGACTGGATAGACCTGAGCGTCTGGAACTGAAACCTGAGCCGAGAGATCCCCCCAGAG
AGCCCGGTTCTCGCGATATCCTGAGGGTTACGTCACGAGAGGTGCCGAAGGAAGTGAAGGACGAG
AAGAAGGAGCCTGTTAAGGAGTCGAAGGAGCCAACGGAGCCCGTTAAGGAGTCAAAGGAGCCTGC
CAAGCTACTGGAACCCAAGGAGCTGCTACGAAAAGCGGACGACCC
Right flanking sequence: Indices 297223 -- 297722
CCGAAGGCTCCTGTATCAACCGAGTCTGCGAAGTCAAAGCCCTTGGAAGCTACCAAATCTGACGT
TCTCGACTCGGCTGGCGTTGAGACAACCAAGCCTACTGAGCCTACTAAGCCGGAGACCGCTAAGC
TGCTACCGAAGCCCTCCGACGCTGCGCTGGAACAGCCTGTGAAACAGTCCACTGAGGACGCGAAG
CCAGCCAAGGAAGATGAGCCGAGGCCGCTGGTTGAACCGAAGGCCGCTGGTGAGGAGGCTACCAA
GGCGAAGGAGGCTGAGACAAAGGAGGCTACCAAGGTAAAGGAGGCTACCGACGCGAAGGAGACTA
CCGAGGCGGAGAAGACTACCGGGGTGAAGGCGTCTACTGAGGCGAAAAAGGACGCTACTAAGGAC
ACTCAGGATGCTACAAAGCCCGATGTAGTCCCCAAGGATCTTAAGGACCTGGAGGCCCTGAAGCC
CCAGGAACCCCAAGAGCCTGTGAAGGTAGCAAAAACCCCTTCGAA
Found at i:297229 original size:18 final size:17
Alignment explanation
Indices: 297180--297229 Score: 64
Period size: 18 Copynumber: 2.8 Consensus size: 17
297170 CGGACGACCC
297180 GAAGGATGCCAAGGATTT
1 GAAGGAT-CCAAGGATTT
*
297198 GAAGGATGCTAAGGATTT
1 GAAGGAT-CCAAGGATTT
297216 GAAGGATCCGAAGG
1 GAAGGATCC-AAGG
297230 CTCCTGTATC
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
17 1 0.03
18 28 0.97
ACGTcount: A:0.34, C:0.10, G:0.36, T:0.20
Consensus pattern (17 bp):
GAAGGATCCAAGGATTT
Left flanking sequence: Indices 296680 -- 297179
GAGGAGCACGACGACGAGCGCCGGCGCAGCACGGACGAGGTGCCCAAGGGCCCGCTGGGAGCGAA
GTCCAAGGAGCGCCCGAAGGAGAAACGAGACGGGCGTGATAGTCGCGACGGTCGAGATGGTCGAG
ATGGTCGAGATGGTCGTGACGGCCGCGAAAACCGTGAAGTTCGCGAAAACCGTGATAAGAGGAAG
GAGAAGGGACGGCCAGAGAGACTGGATAGACCGGAAAGGCTGGATAGACCTGAAAGACTGGATAG
ACCGGAAAGACTGGATAGACCTGAGCGTCTGGAACTGAAACCTGAGCCGAGAGATCCCCCCAGAG
AGCCCGGTTCTCGCGATATCCTGAGGGTTACGTCACGAGAGGTGCCGAAGGAAGTGAAGGACGAG
AAGAAGGAGCCTGTTAAGGAGTCGAAGGAGCCAACGGAGCCCGTTAAGGAGTCAAAGGAGCCTGC
CAAGCTACTGGAACCCAAGGAGCTGCTACGAAAAGCGGACGACCC
Right flanking sequence: Indices 297230 -- 297729
CTCCTGTATCAACCGAGTCTGCGAAGTCAAAGCCCTTGGAAGCTACCAAATCTGACGTTCTCGAC
TCGGCTGGCGTTGAGACAACCAAGCCTACTGAGCCTACTAAGCCGGAGACCGCTAAGCTGCTACC
GAAGCCCTCCGACGCTGCGCTGGAACAGCCTGTGAAACAGTCCACTGAGGACGCGAAGCCAGCCA
AGGAAGATGAGCCGAGGCCGCTGGTTGAACCGAAGGCCGCTGGTGAGGAGGCTACCAAGGCGAAG
GAGGCTGAGACAAAGGAGGCTACCAAGGTAAAGGAGGCTACCGACGCGAAGGAGACTACCGAGGC
GGAGAAGACTACCGGGGTGAAGGCGTCTACTGAGGCGAAAAAGGACGCTACTAAGGACACTCAGG
ATGCTACAAAGCCCGATGTAGTCCCCAAGGATCTTAAGGACCTGGAGGCCCTGAAGCCCCAGGAA
CCCCAAGAGCCTGTGAAGGTAGCAAAAACCCCTTCGAATGACTCG
Found at i:297493 original size:18 final size:18
Alignment explanation
Indices: 297470--297593 Score: 83
Period size: 18 Copynumber: 7.1 Consensus size: 18
297460 GCCGCTGGTG
*
297470 AGGAGGCTACCAAGGCGA
1 AGGAGGCTACCGAGGCGA
* *
297488 AGGAGGCT---GAGACAA
1 AGGAGGCTACCGAGGCGA
* **
297503 AGGAGGCTACCAAGGTAA
1 AGGAGGCTACCGAGGCGA
*
297521 AGGAGGCTACCGACGCGA
1 AGGAGGCTACCGAGGCGA
* *
297539 AGGAGACTACCGAGGCGG
1 AGGAGGCTACCGAGGCGA
* * * *
297557 AGAAGACTACCGGGGTGA
1 AGGAGGCTACCGAGGCGA
* * *
297575 AGGCGTCTACTGAGGCGA
1 AGGAGGCTACCGAGGCGA
297593 A
1 A
297594 AAAGGACGCT
Statistics
Matches: 80, Mismatches: 23, Indels: 6
0.73 0.21 0.06
Matches are distributed among these distances:
15 12 0.15
18 68 0.85
ACGTcount: A:0.32, C:0.20, G:0.39, T:0.09
Consensus pattern (18 bp):
AGGAGGCTACCGAGGCGA
Left flanking sequence: Indices 296970 -- 297469
GGAACTGAAACCTGAGCCGAGAGATCCCCCCAGAGAGCCCGGTTCTCGCGATATCCTGAGGGTTA
CGTCACGAGAGGTGCCGAAGGAAGTGAAGGACGAGAAGAAGGAGCCTGTTAAGGAGTCGAAGGAG
CCAACGGAGCCCGTTAAGGAGTCAAAGGAGCCTGCCAAGCTACTGGAACCCAAGGAGCTGCTACG
AAAAGCGGACGACCCGAAGGATGCCAAGGATTTGAAGGATGCTAAGGATTTGAAGGATCCGAAGG
CTCCTGTATCAACCGAGTCTGCGAAGTCAAAGCCCTTGGAAGCTACCAAATCTGACGTTCTCGAC
TCGGCTGGCGTTGAGACAACCAAGCCTACTGAGCCTACTAAGCCGGAGACCGCTAAGCTGCTACC
GAAGCCCTCCGACGCTGCGCTGGAACAGCCTGTGAAACAGTCCACTGAGGACGCGAAGCCAGCCA
AGGAAGATGAGCCGAGGCCGCTGGTTGAACCGAAGGCCGCTGGTG
Right flanking sequence: Indices 297594 -- 298093
AAAGGACGCTACTAAGGACACTCAGGATGCTACAAAGCCCGATGTAGTCCCCAAGGATCTTAAGG
ACCTGGAGGCCCTGAAGCCCCAGGAACCCCAAGAGCCTGTGAAGGTAGCAAAAACCCCTTCGAAT
GACTCGAAAGACCCTCCCAAAGACTTGCAAGCCCCTCCCAAAGACTCACAAGCCCCTCCCAAAGA
CTCACAAGCCCCTCCCAAAGACCTCAGTGCCACCTCCACCGCTCCCAAGGAGCCCCCGTCTGCCG
CCTCTAAGCCCCTGGACGCCCCCAAAGCCTCCAAACCCACCACGCCAGACAACAAGCCGTCCGGA
AAACCAGCCGAGCCCGTCTCGAAACCAATTGAAGCCAAGGAGACCCCAAAACTGGCTCCTTCGCC
CAAGCTGGCCCCAAAACTGGCTCCGTCTCCAAAACTGGTGCCCAAGCAGGCTCCCAACCCGACGC
CCGCGCCGTCTACTCCCGGTCCCAAGACCAAGAAGTCCTTCTCCG
Found at i:297748 original size:21 final size:21
Alignment explanation
Indices: 297735--297810 Score: 134
Period size: 21 Copynumber: 3.6 Consensus size: 21
297725 ACTCGAAAGA
**
297735 CCCTCCCAAAGACTTGCAAGC
1 CCCTCCCAAAGACTCACAAGC
297756 CCCTCCCAAAGACTCACAAGC
1 CCCTCCCAAAGACTCACAAGC
297777 CCCTCCCAAAGACTCACAAGC
1 CCCTCCCAAAGACTCACAAGC
297798 CCCTCCCAAAGAC
1 CCCTCCCAAAGAC
297811 CTCAGTGCCA
Statistics
Matches: 53, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 53 1.00
ACGTcount: A:0.32, C:0.47, G:0.11, T:0.11
Consensus pattern (21 bp):
CCCTCCCAAAGACTCACAAGC
Left flanking sequence: Indices 297235 -- 297734
GTATCAACCGAGTCTGCGAAGTCAAAGCCCTTGGAAGCTACCAAATCTGACGTTCTCGACTCGGC
TGGCGTTGAGACAACCAAGCCTACTGAGCCTACTAAGCCGGAGACCGCTAAGCTGCTACCGAAGC
CCTCCGACGCTGCGCTGGAACAGCCTGTGAAACAGTCCACTGAGGACGCGAAGCCAGCCAAGGAA
GATGAGCCGAGGCCGCTGGTTGAACCGAAGGCCGCTGGTGAGGAGGCTACCAAGGCGAAGGAGGC
TGAGACAAAGGAGGCTACCAAGGTAAAGGAGGCTACCGACGCGAAGGAGACTACCGAGGCGGAGA
AGACTACCGGGGTGAAGGCGTCTACTGAGGCGAAAAAGGACGCTACTAAGGACACTCAGGATGCT
ACAAAGCCCGATGTAGTCCCCAAGGATCTTAAGGACCTGGAGGCCCTGAAGCCCCAGGAACCCCA
AGAGCCTGTGAAGGTAGCAAAAACCCCTTCGAATGACTCGAAAGA
Right flanking sequence: Indices 297811 -- 298310
CTCAGTGCCACCTCCACCGCTCCCAAGGAGCCCCCGTCTGCCGCCTCTAAGCCCCTGGACGCCCC
CAAAGCCTCCAAACCCACCACGCCAGACAACAAGCCGTCCGGAAAACCAGCCGAGCCCGTCTCGA
AACCAATTGAAGCCAAGGAGACCCCAAAACTGGCTCCTTCGCCCAAGCTGGCCCCAAAACTGGCT
CCGTCTCCAAAACTGGTGCCCAAGCAGGCTCCCAACCCGACGCCCGCGCCGTCTACTCCCGGTCC
CAAGACCAAGAAGTCCTTCTCCGAGTACAAGCTGCTGCTCAAGGACCGCGAGCCCAAGCTCGAGG
CCACCCCGGCGCTTGCCCAGCCAGACCTGTCGTTTGACACCCTGGCACTTTCTCCCGTCAAGGAC
CAGCCCGCGCCCGACGACTACTTCCACAACATGGGCCGGTCCGACGTCGATCTGGACACAGAAAC
CGTGCCCGCTGACCTGCCGCCCCGGGTCAAGAACGCCAAGAAGCT
Found at i:299628 original size:9 final size:9
Alignment explanation
Indices: 299614--299684 Score: 115
Period size: 9 Copynumber: 7.9 Consensus size: 9
299604 GCCGGAGGCT
299614 AAAGCTGAC
1 AAAGCTGAC
*
299623 AAAGCTGAA
1 AAAGCTGAC
*
299632 AAAGCTGAA
1 AAAGCTGAC
299641 AAAGCTGAC
1 AAAGCTGAC
299650 AAAGCTGAC
1 AAAGCTGAC
299659 AAAGCTGAC
1 AAAGCTGAC
*
299668 AAAGCTGAA
1 AAAGCTGAC
299677 AAAGCTGA
1 AAAGCTGA
299685 GGCTGAGGAG
Statistics
Matches: 59, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
9 59 1.00
ACGTcount: A:0.49, C:0.17, G:0.23, T:0.11
Consensus pattern (9 bp):
AAAGCTGAC
Left flanking sequence: Indices 299114 -- 299613
TGCTCTTCTTGGCTGCCCGGAACGGCCACGCCGAGTTGGTGGACATCATCCTTGGGCTCGACCTG
CTGGACTTTTCGTTGGACACCGAGAACGACTGCGGAGTGACGGTGTTGTTGGCGAGTGTGGGCCG
CGACCACGTGGACGTGGTGGAGCTGTTGCTCTCCAAGGGCGCTGACCCGTTCAAGGTGCGGGCGG
CTGACCAGCGCAACGCGTTGCAGATTGCCCAGGCGGCCATCAAGTACAACCCGCACGAGGTGGCG
CTTATCCAGCAGTACATGGAGAAACGGACCAAGTTGAAGCTGAGAGTGAGCTCGAGAGCTGGCTC
GCGGGCGCCGTCGATTGCTCCGCTGGAAGGGAGCGACGAGGAGGAGCAGGAGATTGTGGTGGCCA
AGCGGAGACGCGTGGAGAAGAAGGGAGAGGCTGATACCAAGGAAGATGCTGGCGCTAAGGCTGAA
GAGACCGAAGCCAAGGCGGAGGCAAAGACTGACAGGCCGGAGGCT
Right flanking sequence: Indices 299685 -- 300184
GGCTGAGGAGGCTGAACCAAAGGTGGACTCCGTTGATCCCAAGCCTGAGGCCGGTTCAGACCCTT
CTGAGCCCAAAACTGACCATGCTCGATCCGACAAGACCGACCACCACGAGGAGCCTCCTCGCCCC
AAACGAGTGCGTTCCGAAGCTGACCACGACGAGCACGTCATCAAGCGAGTACGCTCAGAGACCCT
GGAGCATCCCAAGCTGCTGCTGCCGTCGCCAGCTCCCGAGCACCACCCACAGCACCAGCGCGATG
CCGACGAGGCCAGAGCGTGGCAGCGAAAGCAGGAGCTCAAGAAGCAGGCCCGGCGTGACATGTTC
CTCAAGGCCGAGCGCGAGAAGGAACGCTTGCGCCACGAAGCCGAGATCGAGCAGCGCGAAGCAGA
GAAGCGTCGGGCCCACGAGCGTGAGGCTGAGCGCGAGCGGCAGGCTGAGGAAGCCGAGAACAAGA
GCAAGCTTGTGCAGCAGCAGCGGGTCGGGTTGCGGCGCCAGCTCA
Found at i:311890 original size:16 final size:16
Alignment explanation
Indices: 311869--311903 Score: 70
Period size: 16 Copynumber: 2.2 Consensus size: 16
311859 TACTTCAATT
311869 GAGGAATCAGCTTCGG
1 GAGGAATCAGCTTCGG
311885 GAGGAATCAGCTTCGG
1 GAGGAATCAGCTTCGG
311901 GAG
1 GAG
311904 ATCCCCTAGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.26, C:0.17, G:0.40, T:0.17
Consensus pattern (16 bp):
GAGGAATCAGCTTCGG
Left flanking sequence: Indices 311369 -- 311868
GTCTGGTTGTACTAATTCAATAAGTGCCGTAGAACCTTCTCGTACTCTAGCAAATGACGAAGTAA
GTTTATTAATACATATCACAATTCCCAAACGCGACAGCGCTATTTTCATCCTGACAAGTACAAGG
GCCATCATTCACGATTTTGCACAGGCCAATTTTCTTCCCATCGCCATTTTCAACGTAAACACCCC
AAGCGTCTTCACCTTCTGGCCAAATGTTCAACCATTTGCTGTCGCCATCTCTAGGGTCCTCAAAC
CTCCCAAAAAGTGCAGATTTCCACCAATTGTCTGCATCGTAAAACACTTTTTTTCCCTTTCTTTG
ACAAGCCGTCATACAACCATTTTCATCATCAACAGTAGCGTAGCATCCTTTGCCCCCCATAGGGA
GCCACAACCCATAATTCGTCATCCACAACTTAATATTTTCGGCGGCAAACACAGAAGGGACTAAA
GCTAACGCTAAGATTGCAAATTTCATAGTTGTATATACTTCAATT
Right flanking sequence: Indices 311904 -- 312403
ATCCCCTAGTATTTATGACTCTAAGCAAAACACATCCCGTAATAGAAGCAAACAGTTACATCCCT
TCAATGTTTCTACACGTCGTTTACAACGTCATGAAACATATATTGATGTATTAATGGTGCAGTCT
TGTTTGTGTCGTCTCTCGTAATATTCGTCATGAAGCATAACCAATTCCACCTTGCAGAGTGTTTC
AAGTTAAAAAGTTACAAAACAAAAAAGAAATTGTGAATTTCTTGTATCTCATTCAAACGGATCTG
AATGATTGGTCGGTTCCGAACGTGCGCAGTAAAATACTTGGTCTATAATTAGATCTCGTATATTT
CGTCATGACGCAGGTGAGATTTATTTGGGAGTTGTGGCTATGTGCCTTGCTTCCGCTATCTAAGA
AACTGTATGGAACTGTTCCATGATAATTCGAATCAATGCTGTGTGGAATTAATTGGGTTGGAGAT
CTCTTTGGTTGCCATTGCATGATTAGTGCTTGTGATTGCTCATAA
Found at i:318788 original size:18 final size:17
Alignment explanation
Indices: 318748--318790 Score: 59
Period size: 17 Copynumber: 2.5 Consensus size: 17
318738 AAGTTGGTCG
*
318748 GGTCAGTTGAGTGGAGA
1 GGTCAGTTGAGTGCAGA
318765 GGTCAGTTGAGTGACAGA
1 GGTCAGTTGAGTG-CAGA
*
318783 GTTCAGTT
1 GGTCAGTT
318791 CTGAGTGAAG
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 13 0.57
18 10 0.43
ACGTcount: A:0.23, C:0.09, G:0.40, T:0.28
Consensus pattern (17 bp):
GGTCAGTTGAGTGCAGA
Left flanking sequence: Indices 318248 -- 318747
GGTGGTAGCGCAATACTCGAGGTAGTACCAAACATACGACGAAAAGTAAAAACTACGCAATTCGT
AGTTTAAAAGGTATCTTACAGTTTCCAACTTCTCATCCCATCCTTCCTTCCAGCCCACTCCCTAT
CCCCTTCCTTTCTTCCCACATCTCTCCACCCATCTTCCCACCTTCTCACTTCTCACTCATCTCTT
GGTAGCGCCCACATGCTGTACCGGCTCGAGTTGAAGGTACCCTTCGAGACGGCCCGCCAGGCGGA
GATCGCCCGCGACACCTTGCGCCCCGACCCCGTGCTCAAGGACCACGAGACCAGCATCGAGTACG
CCGCCGTCGACTCGGTGTTGGTGGTGACGTTCTCGGGGATCTCGGACCGGGTGATTCGAGTGGCG
ATTCTGAACTGCATCGACAACATCAAGGTGATTATCGAGACGATGGACGTGTTTGACGGGAAGAA
AGACGTCAAGTGGGAGGTTGAGCCGCTGGAGGAGTAAGTTGGTCG
Right flanking sequence: Indices 318791 -- 319290
CTGAGTGAAGTTCAGTTCTGAGTGAAGTTTACTTCTTGTTGTCCTGGCAGCCCACCTCCAATCAG
CGTCCAAACTCTCGCTGGTTTGCTGACCTATTACCACTCATCTCCACTATCCCCACTATCTAGAC
TATACACAATTTACGACGAACAAGTGTAGCAATGGTTTAACTACAAGCCATACCAAACACTCTGA
GCGATACCACGTTACTCCGAGCCCTTTAGCACTCCAATCGTATACTTTCGTCGCTTCCACCACCC
CTCCTTAACCACCACCACCACCCCCACCCCTTCCCCACCCGTTACGAGCCCCCGCCTACTTAATC
GCGAAATCCATAGACCCACCATGGCTCCCAGCAAGCGTATCCACACCGGCGCCGACTTGGCGGCG
TTCCAGCGCTCGCAGGCCCTCGCCAGGCTCCAGCGCACCCTCCTCCGCACCATTGAGAAGATCAA
GGGCCGCCTGGTGCCCCACGACGTCCTCAATCCCAACATCGTCAC
Found at i:318804 original size:17 final size:17
Alignment explanation
Indices: 318782--318819 Score: 76
Period size: 17 Copynumber: 2.2 Consensus size: 17
318772 TGAGTGACAG
318782 AGTTCAGTTCTGAGTGA
1 AGTTCAGTTCTGAGTGA
318799 AGTTCAGTTCTGAGTGA
1 AGTTCAGTTCTGAGTGA
318816 AGTT
1 AGTT
318820 TACTTCTTGT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.24, C:0.11, G:0.29, T:0.37
Consensus pattern (17 bp):
AGTTCAGTTCTGAGTGA
Left flanking sequence: Indices 318282 -- 318781
TACGACGAAAAGTAAAAACTACGCAATTCGTAGTTTAAAAGGTATCTTACAGTTTCCAACTTCTC
ATCCCATCCTTCCTTCCAGCCCACTCCCTATCCCCTTCCTTTCTTCCCACATCTCTCCACCCATC
TTCCCACCTTCTCACTTCTCACTCATCTCTTGGTAGCGCCCACATGCTGTACCGGCTCGAGTTGA
AGGTACCCTTCGAGACGGCCCGCCAGGCGGAGATCGCCCGCGACACCTTGCGCCCCGACCCCGTG
CTCAAGGACCACGAGACCAGCATCGAGTACGCCGCCGTCGACTCGGTGTTGGTGGTGACGTTCTC
GGGGATCTCGGACCGGGTGATTCGAGTGGCGATTCTGAACTGCATCGACAACATCAAGGTGATTA
TCGAGACGATGGACGTGTTTGACGGGAAGAAAGACGTCAAGTGGGAGGTTGAGCCGCTGGAGGAG
TAAGTTGGTCGGGTCAGTTGAGTGGAGAGGTCAGTTGAGTGACAG
Right flanking sequence: Indices 318820 -- 319319
TACTTCTTGTTGTCCTGGCAGCCCACCTCCAATCAGCGTCCAAACTCTCGCTGGTTTGCTGACCT
ATTACCACTCATCTCCACTATCCCCACTATCTAGACTATACACAATTTACGACGAACAAGTGTAG
CAATGGTTTAACTACAAGCCATACCAAACACTCTGAGCGATACCACGTTACTCCGAGCCCTTTAG
CACTCCAATCGTATACTTTCGTCGCTTCCACCACCCCTCCTTAACCACCACCACCACCCCCACCC
CTTCCCCACCCGTTACGAGCCCCCGCCTACTTAATCGCGAAATCCATAGACCCACCATGGCTCCC
AGCAAGCGTATCCACACCGGCGCCGACTTGGCGGCGTTCCAGCGCTCGCAGGCCCTCGCCAGGCT
CCAGCGCACCCTCCTCCGCACCATTGAGAAGATCAAGGGCCGCCTGGTGCCCCACGACGTCCTCA
ATCCCAACATCGTCACCCGCGACCACCGCACCTCCGCCAAATTAG
Found at i:318826 original size:17 final size:17
Alignment explanation
Indices: 318782--318826 Score: 63
Period size: 17 Copynumber: 2.6 Consensus size: 17
318772 TGAGTGACAG
*
318782 AGTTCAGTTCTGAGTGA
1 AGTTCACTTCTGAGTGA
*
318799 AGTTCAGTTCTGAGTGA
1 AGTTCACTTCTGAGTGA
*
318816 AGTTTACTTCT
1 AGTTCACTTCT
318827 TGTTGTCCTG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
17 26 1.00
ACGTcount: A:0.22, C:0.13, G:0.24, T:0.40
Consensus pattern (17 bp):
AGTTCACTTCTGAGTGA
Left flanking sequence: Indices 318282 -- 318781
TACGACGAAAAGTAAAAACTACGCAATTCGTAGTTTAAAAGGTATCTTACAGTTTCCAACTTCTC
ATCCCATCCTTCCTTCCAGCCCACTCCCTATCCCCTTCCTTTCTTCCCACATCTCTCCACCCATC
TTCCCACCTTCTCACTTCTCACTCATCTCTTGGTAGCGCCCACATGCTGTACCGGCTCGAGTTGA
AGGTACCCTTCGAGACGGCCCGCCAGGCGGAGATCGCCCGCGACACCTTGCGCCCCGACCCCGTG
CTCAAGGACCACGAGACCAGCATCGAGTACGCCGCCGTCGACTCGGTGTTGGTGGTGACGTTCTC
GGGGATCTCGGACCGGGTGATTCGAGTGGCGATTCTGAACTGCATCGACAACATCAAGGTGATTA
TCGAGACGATGGACGTGTTTGACGGGAAGAAAGACGTCAAGTGGGAGGTTGAGCCGCTGGAGGAG
TAAGTTGGTCGGGTCAGTTGAGTGGAGAGGTCAGTTGAGTGACAG
Right flanking sequence: Indices 318827 -- 319326
TGTTGTCCTGGCAGCCCACCTCCAATCAGCGTCCAAACTCTCGCTGGTTTGCTGACCTATTACCA
CTCATCTCCACTATCCCCACTATCTAGACTATACACAATTTACGACGAACAAGTGTAGCAATGGT
TTAACTACAAGCCATACCAAACACTCTGAGCGATACCACGTTACTCCGAGCCCTTTAGCACTCCA
ATCGTATACTTTCGTCGCTTCCACCACCCCTCCTTAACCACCACCACCACCCCCACCCCTTCCCC
ACCCGTTACGAGCCCCCGCCTACTTAATCGCGAAATCCATAGACCCACCATGGCTCCCAGCAAGC
GTATCCACACCGGCGCCGACTTGGCGGCGTTCCAGCGCTCGCAGGCCCTCGCCAGGCTCCAGCGC
ACCCTCCTCCGCACCATTGAGAAGATCAAGGGCCGCCTGGTGCCCCACGACGTCCTCAATCCCAA
CATCGTCACCCGCGACCACCGCACCTCCGCCAAATTAGCGTTCGC
Found at i:320635 original size:22 final size:22
Alignment explanation
Indices: 320607--320651 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
320597 GGAAAAACAC
*
320607 GAAAGAAAACGGATGACAGAGA
1 GAAAGAAAACGGATGACACAGA
*
320629 GAAAGAAAACGGGTGACACAGA
1 GAAAGAAAACGGATGACACAGA
320651 G
1 G
320652 TGAACAGAGA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.51, C:0.11, G:0.33, T:0.04
Consensus pattern (22 bp):
GAAAGAAAACGGATGACACAGA
Left flanking sequence: Indices 320107 -- 320606
CGGCCGCCCGTTGCCCGAGCTGGAACCGCCGGCGGACGCGCTGGCGACAATGGCGCCCACCCACA
CCACCCGCAGCAACATCCTGATGACAGCCGCTCCCTGGGCACGGCGCTAGCCACGGCGCGGCCAC
CACGCTGGTGCTACCCGCCTCCGTCCCGCCTGTATGCACGCCACGCTCGGTGCCTGACAAGGGTG
CATGCCCGATGGGGTGACCAGGGCACGTTGCAGGGGTTGCAGGCCAGTGGTGCAACGGACAGTGG
GCGATGTGGGGCACCGATCTGGGCAATTGGCTGGGGCCACTGCATGTGGTTTTGGGCCCCACCGA
CCAGCCAGTTATGACCAAGTCCGGCCCGGATATACGAGGTGTCCCGAAACGGACTGGCAGCCAGA
TGAAACTCCGAAAAAAGACGAGAAAATATGTAGCTCAGATGAAGATAGACACACAATAGAGGCGA
AAAACGGGTGAAAGGGTGAAATAAGGAAGAAAAACGGAAAAACAC
Right flanking sequence: Indices 320652 -- 321151
TGAACAGAGAGAAAGCCCATTGCGGTGGGCCCGTAGAGCGCCACAGCGCACGCATTGGCCCCCAT
ACCCGAAAACGCAACCCGCCGTAGCCCCGCTATTTTTAACTCAGCCCCACTTCCCCTCTGGGAAG
CGGTCCCAGCAGTGGAAATCCTCGCATCCAACGGTACCCAGGGTGTCTCCACCACCGTCCACCGT
TCCCACCCACCCCCCTGCACCACCGCCTTCCGTGCTGGCGACCACCCCACTATTCCATTGTGGGC
CGGTTTCGACGCACGCATAATAACTCGCAGATACCCAGCTTTTTCGTGGAGAACGGAGGTGTGGG
TTCCGAAGACACGGGCGCCGCCACCGCCACACCCACGCCCGCGAGACACGATGGCCATCCACCAC
TGTCCTCTCCACCCCGTAGCCCCACCACCTACCCACCTCCTCCTTCTCCCGCTCGCCCCACCCAG
TTCCTTCCCGTTCCCCGCGACCGGCACACAAGCCCGCATGCCCAC
Found at i:323522 original size:33 final size:32
Alignment explanation
Indices: 323438--323526 Score: 115
Period size: 33 Copynumber: 2.7 Consensus size: 32
323428 TTTCTTTGCA
* *
323438 TTCTTCGTTTCTCTCCTTCTTTGGTTTTTCTCG
1 TTCTTCGTTTCTCTCGTTC-TTCGTTTTTCTCG
** *
323471 GCCTTCGGTTCTCTCGTTCTTCGTTTTTCTCG
1 TTCTTCGTTTCTCTCGTTCTTCGTTTTTCTCG
323503 TTCTTCGTTTCTCTGCGTTCTTCG
1 TTCTTCGTTTCTCT-CGTTCTTCG
323527 GTGCTTATGC
Statistics
Matches: 47, Mismatches: 8, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
32 23 0.49
33 24 0.51
ACGTcount: A:0.00, C:0.29, G:0.16, T:0.55
Consensus pattern (32 bp):
TTCTTCGTTTCTCTCGTTCTTCGTTTTTCTCG
Left flanking sequence: Indices 322938 -- 323437
GACTGGAAGCGCATGGGGCTCGAGTACGTCAAGGCGCGCCAGTTGCTGTTGAAGCGCGCGTATCC
CGACAAGTTCAAGAACGGCGCCAACCCGTTTGAGAGCGAGCTGGCCAAGTTGACGCGCCCGTTGC
TGGTTCCCGGGCTGCCGCTGGCGGAGCGTGCGTTGATGACGCCCGGCGACCTTGGCTCGTTGCTG
GAGGCGCAGGAGGTGCTCAACACCGAGGACTACATCCTGTTCAAGTTGGGCCTGGTGGGGGTGGA
CGACGACGAGGAGGAGGAACAGTATCCGTTGACGCTCCGCGGCACGTCGGTGCCGCCGGACTCGG
ACTAATTATAGTACAGTACGTATCTAGAAAAGTAAGTATGTTTTAGGCGGTAGATGGCGGGTAGA
CGTGGGTGGTGGAGGCTGGGGTAACGCGGTTGGGGTGACAAGGAGTAGGCTCGTTAATTGGTGTG
GTGTTTCTCTGTGTTCGGTTTTTGTGCGTTTTTCGTTTCTTTGCA
Right flanking sequence: Indices 323527 -- 324026
GTGCTTATGCAAGGGCCCCGTGGGAAAAGAAGGTACCGTTTGGGGCGGGAAAAGCTGGAAGACCA
CTTGGCAACGGGCCCTCGTTTTGATCGTGTGTGTCAGCAACCGGGCTCGGCTGCTCGGCTTCGGC
GATGAGGTTTAATCGGCCAGTTGCACGCTATGTTCCCGTTCCCATGCATAAAAAATACTCGTGTA
TGACTTAACGGGATACGAGGCGAACACATTGGGACGCCTGTCCCCGCCACGGGGCAGTGTTGTGG
CTGAAACGGCGACAGTTAAACATACCGGGTGTCTACTGGCGCACCAAATAATGACCACACTCGTA
CCTCGCTAGTCTCGTATACGTACGTGACACGCTATTGTTCTTACAAGCAGGCTCCGGCCAGCAAA
ACGAGCCCTCGTGTTTGAGGTCACTGGAGACTTCGTATCCGACGCGTTTTGTGACCCACCCCTAG
GTATAAAGCCTCGGCGGGGCCAGCTAACTCTCAAATGCAATCTAC
Found at i:323523 original size:17 final size:16
Alignment explanation
Indices: 323419--323526 Score: 99
Period size: 16 Copynumber: 6.6 Consensus size: 16
323409 GGTTTTTGTG
* *
323419 CGTTTTTCGTTTCTTT
1 CGTTCTTCGTTTCTCT
*
323435 GCATTCTTCGTTTCTCT
1 -CGTTCTTCGTTTCTCT
* * *
323452 CCTTCTTTGGTTTTTCT
1 CGTTC-TTCGTTTCTCT
** *
323469 CGGCCTTCGGTTCTCT
1 CGTTCTTCGTTTCTCT
*
323485 CGTTCTTCGTTTTTCT
1 CGTTCTTCGTTTCTCT
323501 CGTTCTTCGTTTCTCT
1 CGTTCTTCGTTTCTCT
323517 GCGTTCTTCG
1 -CGTTCTTCG
323527 GTGCTTATGC
Statistics
Matches: 72, Mismatches: 17, Indels: 4
0.77 0.18 0.04
Matches are distributed among these distances:
16 39 0.54
17 33 0.46
ACGTcount: A:0.01, C:0.28, G:0.16, T:0.56
Consensus pattern (16 bp):
CGTTCTTCGTTTCTCT
Left flanking sequence: Indices 322919 -- 323418
GCGGTTGCTGGACCTCTTGGACTGGAAGCGCATGGGGCTCGAGTACGTCAAGGCGCGCCAGTTGC
TGTTGAAGCGCGCGTATCCCGACAAGTTCAAGAACGGCGCCAACCCGTTTGAGAGCGAGCTGGCC
AAGTTGACGCGCCCGTTGCTGGTTCCCGGGCTGCCGCTGGCGGAGCGTGCGTTGATGACGCCCGG
CGACCTTGGCTCGTTGCTGGAGGCGCAGGAGGTGCTCAACACCGAGGACTACATCCTGTTCAAGT
TGGGCCTGGTGGGGGTGGACGACGACGAGGAGGAGGAACAGTATCCGTTGACGCTCCGCGGCACG
TCGGTGCCGCCGGACTCGGACTAATTATAGTACAGTACGTATCTAGAAAAGTAAGTATGTTTTAG
GCGGTAGATGGCGGGTAGACGTGGGTGGTGGAGGCTGGGGTAACGCGGTTGGGGTGACAAGGAGT
AGGCTCGTTAATTGGTGTGGTGTTTCTCTGTGTTCGGTTTTTGTG
Right flanking sequence: Indices 323527 -- 324026
GTGCTTATGCAAGGGCCCCGTGGGAAAAGAAGGTACCGTTTGGGGCGGGAAAAGCTGGAAGACCA
CTTGGCAACGGGCCCTCGTTTTGATCGTGTGTGTCAGCAACCGGGCTCGGCTGCTCGGCTTCGGC
GATGAGGTTTAATCGGCCAGTTGCACGCTATGTTCCCGTTCCCATGCATAAAAAATACTCGTGTA
TGACTTAACGGGATACGAGGCGAACACATTGGGACGCCTGTCCCCGCCACGGGGCAGTGTTGTGG
CTGAAACGGCGACAGTTAAACATACCGGGTGTCTACTGGCGCACCAAATAATGACCACACTCGTA
CCTCGCTAGTCTCGTATACGTACGTGACACGCTATTGTTCTTACAAGCAGGCTCCGGCCAGCAAA
ACGAGCCCTCGTGTTTGAGGTCACTGGAGACTTCGTATCCGACGCGTTTTGTGACCCACCCCTAG
GTATAAAGCCTCGGCGGGGCCAGCTAACTCTCAAATGCAATCTAC
Found at i:326378 original size:12 final size:12
Alignment explanation
Indices: 326361--326389 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
326351 CGAATTTGGA
326361 GTGTCGAAATAG
1 GTGTCGAAATAG
326373 GTGTCGAAATAG
1 GTGTCGAAATAG
326385 GTGTC
1 GTGTC
326390 TCAGAGACTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.28, C:0.10, G:0.34, T:0.28
Consensus pattern (12 bp):
GTGTCGAAATAG
Left flanking sequence: Indices 325861 -- 326360
GTTCAATTCGCCGTTCGCCCCTTGTTTTTACCTGGTCTGACGGTGTCCTTTTGCGGTCTCGTGTT
CCCATGCCCTGATCTATCGATTACAATCTGAGCGCTTCAAGCACGGGCGTGTGGTCTAGTGGTAT
GATACCTCCTTAGGGTGGAGGTGGTCCGGCGTTCAATTCGCCGCTCGCCCCGTTTTTTTGCTTTT
TGGTTTGCCAGGCGGGTTCCGACGTGTTCGAGCCATGTCCGTTGTGGCCTTTATTTTTCCGTTTT
CGTTCGCTGGCGTTTAGCCGAAACTTTAGTGGGACCCTTCGAAAAAAGTATATAAGGACCGAGTG
GGTCGTAGGGATCGTCGATCATCATGCATCCCATGCGTGTAGCACAGCTGAGCGTGTAGTAGTGA
ATGAGGTCATGTAGTGAAAATAGTCACCTGGTAAAGGACACCGCCATTCCACGGTTCTTTTGCCG
GGTTCAACGCCCACACTTTTCTTGACGTATCGTGTCGAATTTGGA
Right flanking sequence: Indices 326390 -- 326889
TCAGAGACTTTCAAGTATGAGTTTCTTCTTAAATTGAAAATTTTGCTAATATTTCATGAACACAC
TCATGAACACACTTTCTTCAAATCGTCACAGTACAAAAAGTAAGCTAATAACTCACACTAGGGTT
TACCCGTGTAAAAACTCCATATACCAGGTTATGCATCTTACCAAACAGTAGCCATCTAACTATGA
GGTAGTTATTAAACATGTCAGACTTCGCATCTGATTGTAATGAAGAAGTAAGCACAAATGACTGC
CCTTCAGTAATGAGATTATCGAATTTCAATAAACTTTAGGCTAAAGAGACAGGAATGTAGACCTT
AATAGGTTACGCAACCTGTAACCCGGGGTATTGTTACACTGTATAGGATATAGTCTCCCGATTAT
TGCGACCATTGGGAACTTCATCAAATTTCATAACCGCATTTCGTATCCTTCGATCTGAGTAAGAA
CTCTACCATGGTTAAGAAATCCACCATGGCTAAGAAACCATGGCA
Found at i:326460 original size:12 final size:12
Alignment explanation
Indices: 326443--326467 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
326433 TGCTAATATT
326443 TCATGAACACAC
1 TCATGAACACAC
326455 TCATGAACACAC
1 TCATGAACACAC
326467 T
1 T
326468 TTCTTCAAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.32, G:0.08, T:0.20
Consensus pattern (12 bp):
TCATGAACACAC
Left flanking sequence: Indices 325943 -- 326442
CGATTACAATCTGAGCGCTTCAAGCACGGGCGTGTGGTCTAGTGGTATGATACCTCCTTAGGGTG
GAGGTGGTCCGGCGTTCAATTCGCCGCTCGCCCCGTTTTTTTGCTTTTTGGTTTGCCAGGCGGGT
TCCGACGTGTTCGAGCCATGTCCGTTGTGGCCTTTATTTTTCCGTTTTCGTTCGCTGGCGTTTAG
CCGAAACTTTAGTGGGACCCTTCGAAAAAAGTATATAAGGACCGAGTGGGTCGTAGGGATCGTCG
ATCATCATGCATCCCATGCGTGTAGCACAGCTGAGCGTGTAGTAGTGAATGAGGTCATGTAGTGA
AAATAGTCACCTGGTAAAGGACACCGCCATTCCACGGTTCTTTTGCCGGGTTCAACGCCCACACT
TTTCTTGACGTATCGTGTCGAATTTGGAGTGTCGAAATAGGTGTCGAAATAGGTGTCTCAGAGAC
TTTCAAGTATGAGTTTCTTCTTAAATTGAAAATTTTGCTAATATT
Right flanking sequence: Indices 326468 -- 326967
TTCTTCAAATCGTCACAGTACAAAAAGTAAGCTAATAACTCACACTAGGGTTTACCCGTGTAAAA
ACTCCATATACCAGGTTATGCATCTTACCAAACAGTAGCCATCTAACTATGAGGTAGTTATTAAA
CATGTCAGACTTCGCATCTGATTGTAATGAAGAAGTAAGCACAAATGACTGCCCTTCAGTAATGA
GATTATCGAATTTCAATAAACTTTAGGCTAAAGAGACAGGAATGTAGACCTTAATAGGTTACGCA
ACCTGTAACCCGGGGTATTGTTACACTGTATAGGATATAGTCTCCCGATTATTGCGACCATTGGG
AACTTCATCAAATTTCATAACCGCATTTCGTATCCTTCGATCTGAGTAAGAACTCTACCATGGTT
AAGAAATCCACCATGGCTAAGAAACCATGGCAGAACGACTAGAAACTCACCAACGGTGCATTTCA
CCAACGGTGCATTTCACCAACGGTGCCTTTAACTCCTTTCTGATC
Found at i:326862 original size:18 final size:18
Alignment explanation
Indices: 326839--326881 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
326829 TCGATCTGAG
* * *
326839 TAAGAACTCTACCATGGT
1 TAAGAAATCCACCATGGC
326857 TAAGAAATCCACCATGGC
1 TAAGAAATCCACCATGGC
326875 TAAGAAA
1 TAAGAAA
326882 CCATGGCAGA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.42, C:0.21, G:0.16, T:0.21
Consensus pattern (18 bp):
TAAGAAATCCACCATGGC
Left flanking sequence: Indices 326339 -- 326838
GACGTATCGTGTCGAATTTGGAGTGTCGAAATAGGTGTCGAAATAGGTGTCTCAGAGACTTTCAA
GTATGAGTTTCTTCTTAAATTGAAAATTTTGCTAATATTTCATGAACACACTCATGAACACACTT
TCTTCAAATCGTCACAGTACAAAAAGTAAGCTAATAACTCACACTAGGGTTTACCCGTGTAAAAA
CTCCATATACCAGGTTATGCATCTTACCAAACAGTAGCCATCTAACTATGAGGTAGTTATTAAAC
ATGTCAGACTTCGCATCTGATTGTAATGAAGAAGTAAGCACAAATGACTGCCCTTCAGTAATGAG
ATTATCGAATTTCAATAAACTTTAGGCTAAAGAGACAGGAATGTAGACCTTAATAGGTTACGCAA
CCTGTAACCCGGGGTATTGTTACACTGTATAGGATATAGTCTCCCGATTATTGCGACCATTGGGA
ACTTCATCAAATTTCATAACCGCATTTCGTATCCTTCGATCTGAG
Right flanking sequence: Indices 326882 -- 327381
CCATGGCAGAACGACTAGAAACTCACCAACGGTGCATTTCACCAACGGTGCATTTCACCAACGGT
GCCTTTAACTCCTTTCTGATCCTGAAGTCTGGTCGCAAAACTAGCGTGGCTCCTACACCCCTTCG
ACAATTGTCTATTCTAGATGCTAAAAGTTACTATTCATCATAGCCCGGACGTCTGCGCCCGCCAG
GGGGACCAAGTCGCCCCCCTCGTCGTGGTTCACCACCGGCAGCCCGATCTGGTGCTTGCTCGCGG
GCTTGTACGTGGGCTTGCGCGCAATCCCCGTGGGGTTGATCATCGCCACCAGGTTGCGCGCCATC
TGGGTCGCCGAGAGCACCGGCCCGTTGTCGGTGTCGGCCCACGGCTGCTGCATCTCCGGGTTGGC
CACCGCCACCGGCCCCTGGGCCCGCTTGGACCGCGGCACCTGGCCGAAGTCGGTGTATGTCTGGA
GCGTCAGCAGCCGGATGTCCAGCGCCGTGGGGATGGGCTGCGGGG
Found at i:326925 original size:16 final size:16
Alignment explanation
Indices: 326904--326948 Score: 90
Period size: 16 Copynumber: 2.8 Consensus size: 16
326894 GACTAGAAAC
326904 TCACCAACGGTGCATT
1 TCACCAACGGTGCATT
326920 TCACCAACGGTGCATT
1 TCACCAACGGTGCATT
326936 TCACCAACGGTGC
1 TCACCAACGGTGC
326949 CTTTAACTCC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 29 1.00
ACGTcount: A:0.24, C:0.33, G:0.20, T:0.22
Consensus pattern (16 bp):
TCACCAACGGTGCATT
Left flanking sequence: Indices 326404 -- 326903
GTATGAGTTTCTTCTTAAATTGAAAATTTTGCTAATATTTCATGAACACACTCATGAACACACTT
TCTTCAAATCGTCACAGTACAAAAAGTAAGCTAATAACTCACACTAGGGTTTACCCGTGTAAAAA
CTCCATATACCAGGTTATGCATCTTACCAAACAGTAGCCATCTAACTATGAGGTAGTTATTAAAC
ATGTCAGACTTCGCATCTGATTGTAATGAAGAAGTAAGCACAAATGACTGCCCTTCAGTAATGAG
ATTATCGAATTTCAATAAACTTTAGGCTAAAGAGACAGGAATGTAGACCTTAATAGGTTACGCAA
CCTGTAACCCGGGGTATTGTTACACTGTATAGGATATAGTCTCCCGATTATTGCGACCATTGGGA
ACTTCATCAAATTTCATAACCGCATTTCGTATCCTTCGATCTGAGTAAGAACTCTACCATGGTTA
AGAAATCCACCATGGCTAAGAAACCATGGCAGAACGACTAGAAAC
Right flanking sequence: Indices 326949 -- 327448
CTTTAACTCCTTTCTGATCCTGAAGTCTGGTCGCAAAACTAGCGTGGCTCCTACACCCCTTCGAC
AATTGTCTATTCTAGATGCTAAAAGTTACTATTCATCATAGCCCGGACGTCTGCGCCCGCCAGGG
GGACCAAGTCGCCCCCCTCGTCGTGGTTCACCACCGGCAGCCCGATCTGGTGCTTGCTCGCGGGC
TTGTACGTGGGCTTGCGCGCAATCCCCGTGGGGTTGATCATCGCCACCAGGTTGCGCGCCATCTG
GGTCGCCGAGAGCACCGGCCCGTTGTCGGTGTCGGCCCACGGCTGCTGCATCTCCGGGTTGGCCA
CCGCCACCGGCCCCTGGGCCCGCTTGGACCGCGGCACCTGGCCGAAGTCGGTGTATGTCTGGAGC
GTCAGCAGCCGGATGTCCAGCGCCGTGGGGATGGGCTGCGGGGTGAACTGCGGGTGGCCCTCGAA
CGCGGGACTCAGCAACTCGTACCCGTTGGGCGAGTACTCGACGGG
Found at i:327507 original size:12 final size:12
Alignment explanation
Indices: 327486--327525 Score: 62
Period size: 12 Copynumber: 3.3 Consensus size: 12
327476 GTCCGGGTAC
*
327486 CCGTCGAACTGG
1 CCGTCAAACTGG
327498 CCGTCAAACTGG
1 CCGTCAAACTGG
*
327510 CCGTCAAACTGC
1 CCGTCAAACTGG
327522 CCGT
1 CCGT
327526 TGAACTGGTG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
12 26 1.00
ACGTcount: A:0.20, C:0.38, G:0.25, T:0.17
Consensus pattern (12 bp):
CCGTCAAACTGG
Left flanking sequence: Indices 326986 -- 327485
ACTAGCGTGGCTCCTACACCCCTTCGACAATTGTCTATTCTAGATGCTAAAAGTTACTATTCATC
ATAGCCCGGACGTCTGCGCCCGCCAGGGGGACCAAGTCGCCCCCCTCGTCGTGGTTCACCACCGG
CAGCCCGATCTGGTGCTTGCTCGCGGGCTTGTACGTGGGCTTGCGCGCAATCCCCGTGGGGTTGA
TCATCGCCACCAGGTTGCGCGCCATCTGGGTCGCCGAGAGCACCGGCCCGTTGTCGGTGTCGGCC
CACGGCTGCTGCATCTCCGGGTTGGCCACCGCCACCGGCCCCTGGGCCCGCTTGGACCGCGGCAC
CTGGCCGAAGTCGGTGTATGTCTGGAGCGTCAGCAGCCGGATGTCCAGCGCCGTGGGGATGGGCT
GCGGGGTGAACTGCGGGTGGCCCTCGAACGCGGGACTCAGCAACTCGTACCCGTTGGGCGAGTAC
TCGACGGGCTGCCCGTTGTACGCGGCCACCTGGGGGTCCGGGTAC
Right flanking sequence: Indices 327526 -- 328025
TGAACTGGTGTTGCTGGTCAAACTGGGCGTTTTGCCCGTCAAACTGGTTCAGCTCATTAAACTCC
TGGTGCTGCCCAAACTGGTTCTGCCCGTTAAACTGGTTCTGCCCGTTAAACTGGTTCTGCCCGTC
AAACTGGGCCGTCTGCGCAGCCTGCGGCGAGTCGCCCGCGGGGTACACGCTCAGCGCCGTCGTCA
TGCGTTTGTCGAGGCCCAACGCCGGCAACGGAGGCTCCGGGCTCGTGGGGTCCTTGCCCTTGTCA
AAGTACACCCGGTACACCAGCTTCATCCGCTGGATCTCCTCCTCCTGCTCGTGGGTGAGCTCCTG
CTCCTCGTCGGAGTCGTTGGCCAACAAGTTGAACAGCAGGATCCGCGGCAGCTTGCGGGGCCGCG
GGAGCTCGTCGCGGGGCTCGGCCGCCAACCCAGACTGCTCGGCCGCCGCCAGCGCGTGCCGCAAG
TGCAGCAGCACCAGCACCGCGCGGTGCATGTTGTCGATCAGCTTC
Found at i:327622 original size:36 final size:35
Alignment explanation
Indices: 327565--327660 Score: 97
Period size: 36 Copynumber: 2.7 Consensus size: 35
327555 TTTTGCCCGT
* * *
327565 CAAACTGGTTCAGCTCATTAAACTCCTGGTGCTGCC
1 CAAACTGGTTCTGCCCGTTAAACT-CTGGTGCTGCC
*
327601 CAAACTGGTTCTGCCCGTTAAA--CTGGTTCTGCC
1 CAAACTGGTTCTGCCCGTTAAACTCTGGTGCTGCC
*
327634 CGTTAAACTGGTTCTGCCCGTCAAACT
1 C---AAACTGGTTCTGCCCGTTAAACT
327661 GGGCCGTCTG
Statistics
Matches: 50, Mismatches: 5, Indels: 8
0.79 0.08 0.13
Matches are distributed among these distances:
33 11 0.22
36 39 0.78
ACGTcount: A:0.21, C:0.30, G:0.20, T:0.29
Consensus pattern (35 bp):
CAAACTGGTTCTGCCCGTTAAACTCTGGTGCTGCC
Left flanking sequence: Indices 327065 -- 327564
TGCGCCCGCCAGGGGGACCAAGTCGCCCCCCTCGTCGTGGTTCACCACCGGCAGCCCGATCTGGT
GCTTGCTCGCGGGCTTGTACGTGGGCTTGCGCGCAATCCCCGTGGGGTTGATCATCGCCACCAGG
TTGCGCGCCATCTGGGTCGCCGAGAGCACCGGCCCGTTGTCGGTGTCGGCCCACGGCTGCTGCAT
CTCCGGGTTGGCCACCGCCACCGGCCCCTGGGCCCGCTTGGACCGCGGCACCTGGCCGAAGTCGG
TGTATGTCTGGAGCGTCAGCAGCCGGATGTCCAGCGCCGTGGGGATGGGCTGCGGGGTGAACTGC
GGGTGGCCCTCGAACGCGGGACTCAGCAACTCGTACCCGTTGGGCGAGTACTCGACGGGCTGCCC
GTTGTACGCGGCCACCTGGGGGTCCGGGTACCCGTCGAACTGGCCGTCAAACTGGCCGTCAAACT
GCCCGTTGAACTGGTGTTGCTGGTCAAACTGGGCGTTTTGCCCGT
Right flanking sequence: Indices 327661 -- 328160
GGGCCGTCTGCGCAGCCTGCGGCGAGTCGCCCGCGGGGTACACGCTCAGCGCCGTCGTCATGCGT
TTGTCGAGGCCCAACGCCGGCAACGGAGGCTCCGGGCTCGTGGGGTCCTTGCCCTTGTCAAAGTA
CACCCGGTACACCAGCTTCATCCGCTGGATCTCCTCCTCCTGCTCGTGGGTGAGCTCCTGCTCCT
CGTCGGAGTCGTTGGCCAACAAGTTGAACAGCAGGATCCGCGGCAGCTTGCGGGGCCGCGGGAGC
TCGTCGCGGGGCTCGGCCGCCAACCCAGACTGCTCGGCCGCCGCCAGCGCGTGCCGCAAGTGCAG
CAGCACCAGCACCGCGCGGTGCATGTTGTCGATCAGCTTCTGCAGCAACTCGCGCAGGGCAAACT
CGTCGATGCGCAGGTCGTCGTCGGGCCGGCGCGAGTTCTGGCGCCGCGGCGTCAGCGAGCCCAGC
TCGAATGTGAAGTGGCTGACGTCGTCGTCGTCGTCGTCGTCGTCG
Found at i:327623 original size:18 final size:18
Alignment explanation
Indices: 327602--327662 Score: 113
Period size: 18 Copynumber: 3.4 Consensus size: 18
327592 GGTGCTGCCC
327602 AAACTGGTTCTGCCCGTT
1 AAACTGGTTCTGCCCGTT
327620 AAACTGGTTCTGCCCGTT
1 AAACTGGTTCTGCCCGTT
*
327638 AAACTGGTTCTGCCCGTC
1 AAACTGGTTCTGCCCGTT
327656 AAACTGG
1 AAACTGG
327663 GCCGTCTGCG
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
18 42 1.00
ACGTcount: A:0.20, C:0.28, G:0.23, T:0.30
Consensus pattern (18 bp):
AAACTGGTTCTGCCCGTT
Left flanking sequence: Indices 327102 -- 327601
TGGTTCACCACCGGCAGCCCGATCTGGTGCTTGCTCGCGGGCTTGTACGTGGGCTTGCGCGCAAT
CCCCGTGGGGTTGATCATCGCCACCAGGTTGCGCGCCATCTGGGTCGCCGAGAGCACCGGCCCGT
TGTCGGTGTCGGCCCACGGCTGCTGCATCTCCGGGTTGGCCACCGCCACCGGCCCCTGGGCCCGC
TTGGACCGCGGCACCTGGCCGAAGTCGGTGTATGTCTGGAGCGTCAGCAGCCGGATGTCCAGCGC
CGTGGGGATGGGCTGCGGGGTGAACTGCGGGTGGCCCTCGAACGCGGGACTCAGCAACTCGTACC
CGTTGGGCGAGTACTCGACGGGCTGCCCGTTGTACGCGGCCACCTGGGGGTCCGGGTACCCGTCG
AACTGGCCGTCAAACTGGCCGTCAAACTGCCCGTTGAACTGGTGTTGCTGGTCAAACTGGGCGTT
TTGCCCGTCAAACTGGTTCAGCTCATTAAACTCCTGGTGCTGCCC
Right flanking sequence: Indices 327663 -- 328162
GCCGTCTGCGCAGCCTGCGGCGAGTCGCCCGCGGGGTACACGCTCAGCGCCGTCGTCATGCGTTT
GTCGAGGCCCAACGCCGGCAACGGAGGCTCCGGGCTCGTGGGGTCCTTGCCCTTGTCAAAGTACA
CCCGGTACACCAGCTTCATCCGCTGGATCTCCTCCTCCTGCTCGTGGGTGAGCTCCTGCTCCTCG
TCGGAGTCGTTGGCCAACAAGTTGAACAGCAGGATCCGCGGCAGCTTGCGGGGCCGCGGGAGCTC
GTCGCGGGGCTCGGCCGCCAACCCAGACTGCTCGGCCGCCGCCAGCGCGTGCCGCAAGTGCAGCA
GCACCAGCACCGCGCGGTGCATGTTGTCGATCAGCTTCTGCAGCAACTCGCGCAGGGCAAACTCG
TCGATGCGCAGGTCGTCGTCGGGCCGGCGCGAGTTCTGGCGCCGCGGCGTCAGCGAGCCCAGCTC
GAATGTGAAGTGGCTGACGTCGTCGTCGTCGTCGTCGTCGTCGGT
Found at i:328143 original size:3 final size:3
Alignment explanation
Indices: 328135--328160 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
328125 AAGTGGCTGA
328135 CGT CGT CGT CGT CGT CGT CGT CGT CG
1 CGT CGT CGT CGT CGT CGT CGT CGT CG
328161 GTGTACTCGG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.00, C:0.35, G:0.35, T:0.31
Consensus pattern (3 bp):
CGT
Left flanking sequence: Indices 327635 -- 328134
GTTAAACTGGTTCTGCCCGTCAAACTGGGCCGTCTGCGCAGCCTGCGGCGAGTCGCCCGCGGGGT
ACACGCTCAGCGCCGTCGTCATGCGTTTGTCGAGGCCCAACGCCGGCAACGGAGGCTCCGGGCTC
GTGGGGTCCTTGCCCTTGTCAAAGTACACCCGGTACACCAGCTTCATCCGCTGGATCTCCTCCTC
CTGCTCGTGGGTGAGCTCCTGCTCCTCGTCGGAGTCGTTGGCCAACAAGTTGAACAGCAGGATCC
GCGGCAGCTTGCGGGGCCGCGGGAGCTCGTCGCGGGGCTCGGCCGCCAACCCAGACTGCTCGGCC
GCCGCCAGCGCGTGCCGCAAGTGCAGCAGCACCAGCACCGCGCGGTGCATGTTGTCGATCAGCTT
CTGCAGCAACTCGCGCAGGGCAAACTCGTCGATGCGCAGGTCGTCGTCGGGCCGGCGCGAGTTCT
GGCGCCGCGGCGTCAGCGAGCCCAGCTCGAATGTGAAGTGGCTGA
Right flanking sequence: Indices 328161 -- 328660
GTGTACTCGGCGGGGGCCCCGAGCGTGGGCGGTTGCTGGAGCTTGTCGTCAAACGGCAGCAACTC
CTTGCGGGCGTCGGACAACCGCAGGCCCGAGCTCAACTGGGTCCCCTGCAGCGCCAGGTGGACCA
TTTCGCCCTGCGACAGCACCTGGTCCGCGGCCGCGGGGGTGGCCAACAGCTCCGACACCTGGCGC
GAGTGCTGGGCGCCGCTGAGGTGGGAGAGCGTCAGCGAGAGCCGCGGCTTCAGTGCCATGTACAG
CTGGCGGCCGCCGTCGGGGAACTGGCGCAAGTAGTCGTTCAACGAGAGCTTCAGCTCGGTGGCGT
CGGCCATCGGGAGGAACAGCTGGAGCGGGTCGCTGGTGGTGACCGACCCCGCCAGCTGGTTGTGT
TGCGGGTGGTGGTACATGGCCGCGGGCTTTTCCATCTCGCCCGACGAGTGGGACCCGTGGTCGAA
CGGGTTGGGCCCCTGGCCGGCGTAGGCCTTGGCGTACTCGGGCAC
Found at i:329047 original size:22 final size:22
Alignment explanation
Indices: 329017--329090 Score: 125
Period size: 22 Copynumber: 3.5 Consensus size: 22
329007 AGTCTGGTTA
329017 AAAAACCGTGTGGAAACTAGTC
1 AAAAACCGTGTGGAAACTAGTC
*
329039 AGAAACCGTGT--AAACTAGTC
1 AAAAACCGTGTGGAAACTAGTC
329059 AAAAACCGTGTGGAAACTAGTC
1 AAAAACCGTGTGGAAACTAGTC
329081 AAAAACCGTG
1 AAAAACCGTG
329091 GATCCTCGTC
Statistics
Matches: 48, Mismatches: 2, Indels: 4
0.89 0.04 0.07
Matches are distributed among these distances:
20 19 0.40
22 29 0.60
ACGTcount: A:0.42, C:0.19, G:0.22, T:0.18
Consensus pattern (22 bp):
AAAAACCGTGTGGAAACTAGTC
Left flanking sequence: Indices 328517 -- 329016
GCTGGTGGTGACCGACCCCGCCAGCTGGTTGTGTTGCGGGTGGTGGTACATGGCCGCGGGCTTTT
CCATCTCGCCCGACGAGTGGGACCCGTGGTCGAACGGGTTGGGCCCCTGGCCGGCGTAGGCCTTG
GCGTACTCGGGCACCCCGTAGCCCTTGTAGTCGGGCAACGCGGTGACATCGCCCGTCTCGTCAAA
GTCCGGGTCGTGCTCCAGCATCTCTTTCTTGTCCTTGCGGTAGTTGCGCCACAAAAAGAACCCGA
GCACCATGCAGATGACCACCACCGGCACACACACCGACACCGCGATGGTGGCGGCGTTGTCGTGC
ACGGGGGTTTCGCAGTCGGGGGTGTTGGGGTGCTTTTTGCACTCGTCGGCGTCCAGGGCCCGTTT
TATCAATGAGATGAACATGGGGGTTATTGGGTTGAAGCGGGAAAGTGCTTTCTGGGAACTGGTTA
ACTGCTAACTGGTCAAGTTAGCGGGAAACAGTAGAAGTCTGGTTA
Right flanking sequence: Indices 329091 -- 329590
GATCCTCGTCAAAAAAAACCTGTCAAAAAGAACCAGGTTAAATTCGCCAGAAGGTTTAAAAGAGC
CTAACGAAAAACAGCCAAAAACAGTCAAAAACGACTAAAAAGTAAATCAGCCAAAAACAGCCAAA
AGGTGAAAAAAGCCAAAAATCAGTCAAAAATTCAGCTAGAACACCAAGAGGTTAACAGCAGAGCC
AAGGGTGTAACCAGATTGTCTCAGCGAGTGTGAAAGCCGGTTTCGGGGAACTAAAATAGCTAGCC
AGCGGGTGGAAGCTAGGGTCTGGACGGTTTGTAGAACGCCGAGCGCCAGTCCAGGTCAAAAACAG
CTCTTGCGAGGTAGAAAAGCAAATAAACAAACACGGGGCAGTCTCTGGGACGCGGGTTTGCTTGT
GGTGTGGCTTTCAGGGGGGTTAAAGGCGCGAGGTCTAGCGTCTTGTTCCAAGCAGCGGACAGTCG
CAGGAGCAACTAATAAACGAAGGTGGGAGGGTCGGGGGGGTCGCT
Found at i:330336 original size:11 final size:11
Alignment explanation
Indices: 330320--330348 Score: 58
Period size: 11 Copynumber: 2.6 Consensus size: 11
330310 GAGGATTGCT
330320 CGTATCGCACG
1 CGTATCGCACG
330331 CGTATCGCACG
1 CGTATCGCACG
330342 CGTATCG
1 CGTATCG
330349 GGAGACGCGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.17, C:0.34, G:0.28, T:0.21
Consensus pattern (11 bp):
CGTATCGCACG
Left flanking sequence: Indices 329820 -- 330319
GTGGGCTACGGTGTTTTTGTGGTGGCTTTTGCTGGTTTTCCGGCGGCTCTGGCGTGGTTTTGGGC
CGGTTTCCCGACGGGCTCGCTGGTGTCTGCGTGCTCGTAACCAGACGCGTACACAAATAGGGGAG
GCAGGGGAGGCGGGCTAAATGCCGGTGCCTGCTTGGGCGGTTACGTCAGAGGAGGCTGCTGGGGG
TGGTGGGGCGTTCTGGGGGCGCTCTGGGGGGCGGACCACCTGATCCATCGCAAATTCCCACCTGA
GACACTGAAATTCCGCGCGTCTTGGCTCTGCTTACTCCAGGGCTTGACCGTGGGCTTATGCAAAT
GCCGTCCCATGCCTGCATGATTCAGAAAATTTAGCTATTTAACTGTGGTGTGTGCACACCACGGC
CCGAATGGGGTTAAATTGGAGTAGGGGTTGCGGAGGCAGTTGGCAATGGCAGGGGACAGGGGCTA
CATTCCGAGGTGGGTGCGGGCCCCCGGTGGTGGTGGAGGATTGCT
Right flanking sequence: Indices 330349 -- 330848
GGAGACGCGAGACCACGCGTAGCCTGATCAAAGGGGGCTGGTTGATAGGTGGAAGCGAGAGTGCA
GGGAAGGGGTGATGGGGTGGTAATAGGGGTGGTAATAGAGTGGTGGGAGACTGTGGAGGTGGTTG
TAGAGGGTTGTTGGACGGGGAGTTCCGTGGTAGCAATAGGGGTTTGTTTGTTTGTTTGTGTAGAT
TACGAGTTTACGAGTGAATGGCTCGGGCATTTGGCTAATGGCGGCTAAAGTGGCTTGGGACACTA
GTGACCGATGGCACAAAGCAGACGCGGTTTTGTGGTGAGCGGTAGGTCGCATGACAGACAGCGAA
CGGGTGAGTGGGGGGATGAGGGGATGAGTGAGGGGGATGGGGTGATGGGGGATGAGGTGATGAAG
GGATTGGCGGGATTGGCGGATTAGCAGGAGGGACATGTACGTGGTTTACGATGGTAGAGGTGTCT
TACAGGACTAGTGGGAAGAAGTTGAGTTGGGTTATTGTGATCTTC
Found at i:330444 original size:12 final size:12
Alignment explanation
Indices: 330427--330451 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
330417 AAGGGGTGAT
330427 GGGGTGGTAATA
1 GGGGTGGTAATA
330439 GGGGTGGTAATA
1 GGGGTGGTAATA
330451 G
1 G
330452 AGTGGTGGGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.00, G:0.52, T:0.24
Consensus pattern (12 bp):
GGGGTGGTAATA
Left flanking sequence: Indices 329927 -- 330426
AGACGCGTACACAAATAGGGGAGGCAGGGGAGGCGGGCTAAATGCCGGTGCCTGCTTGGGCGGTT
ACGTCAGAGGAGGCTGCTGGGGGTGGTGGGGCGTTCTGGGGGCGCTCTGGGGGGCGGACCACCTG
ATCCATCGCAAATTCCCACCTGAGACACTGAAATTCCGCGCGTCTTGGCTCTGCTTACTCCAGGG
CTTGACCGTGGGCTTATGCAAATGCCGTCCCATGCCTGCATGATTCAGAAAATTTAGCTATTTAA
CTGTGGTGTGTGCACACCACGGCCCGAATGGGGTTAAATTGGAGTAGGGGTTGCGGAGGCAGTTG
GCAATGGCAGGGGACAGGGGCTACATTCCGAGGTGGGTGCGGGCCCCCGGTGGTGGTGGAGGATT
GCTCGTATCGCACGCGTATCGCACGCGTATCGGGAGACGCGAGACCACGCGTAGCCTGATCAAAG
GGGGCTGGTTGATAGGTGGAAGCGAGAGTGCAGGGAAGGGGTGAT
Right flanking sequence: Indices 330452 -- 330951
AGTGGTGGGAGACTGTGGAGGTGGTTGTAGAGGGTTGTTGGACGGGGAGTTCCGTGGTAGCAATA
GGGGTTTGTTTGTTTGTTTGTGTAGATTACGAGTTTACGAGTGAATGGCTCGGGCATTTGGCTAA
TGGCGGCTAAAGTGGCTTGGGACACTAGTGACCGATGGCACAAAGCAGACGCGGTTTTGTGGTGA
GCGGTAGGTCGCATGACAGACAGCGAACGGGTGAGTGGGGGGATGAGGGGATGAGTGAGGGGGAT
GGGGTGATGGGGGATGAGGTGATGAAGGGATTGGCGGGATTGGCGGATTAGCAGGAGGGACATGT
ACGTGGTTTACGATGGTAGAGGTGTCTTACAGGACTAGTGGGAAGAAGTTGAGTTGGGTTATTGT
GATCTTCAAGGAAGTTGAATTAACTTTGTTTTGAAGTCCGAGACCCCAGGAGTGACTTTTGTTTG
TTTTTAGTTATGGCTCCGTCATTTTATTGCGTATAGATATGAGGT
Found at i:330710 original size:21 final size:20
Alignment explanation
Indices: 330678--330720 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 20
330668 AGCGAACGGG
330678 TGAGTGGGGGGATGAGGG-GA
1 TGAGTGGGGGGATG-GGGTGA
330698 TGAGTGAGGGGGATGGGGTGA
1 TGAGTG-GGGGGATGGGGTGA
330719 TG
1 TG
330721 GGGGATGAGG
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
20 9 0.43
21 12 0.57
ACGTcount: A:0.19, C:0.00, G:0.63, T:0.19
Consensus pattern (20 bp):
TGAGTGGGGGGATGGGGTGA
Left flanking sequence: Indices 330178 -- 330677
GCTATTTAACTGTGGTGTGTGCACACCACGGCCCGAATGGGGTTAAATTGGAGTAGGGGTTGCGG
AGGCAGTTGGCAATGGCAGGGGACAGGGGCTACATTCCGAGGTGGGTGCGGGCCCCCGGTGGTGG
TGGAGGATTGCTCGTATCGCACGCGTATCGCACGCGTATCGGGAGACGCGAGACCACGCGTAGCC
TGATCAAAGGGGGCTGGTTGATAGGTGGAAGCGAGAGTGCAGGGAAGGGGTGATGGGGTGGTAAT
AGGGGTGGTAATAGAGTGGTGGGAGACTGTGGAGGTGGTTGTAGAGGGTTGTTGGACGGGGAGTT
CCGTGGTAGCAATAGGGGTTTGTTTGTTTGTTTGTGTAGATTACGAGTTTACGAGTGAATGGCTC
GGGCATTTGGCTAATGGCGGCTAAAGTGGCTTGGGACACTAGTGACCGATGGCACAAAGCAGACG
CGGTTTTGTGGTGAGCGGTAGGTCGCATGACAGACAGCGAACGGG
Right flanking sequence: Indices 330721 -- 331220
GGGGATGAGGTGATGAAGGGATTGGCGGGATTGGCGGATTAGCAGGAGGGACATGTACGTGGTTT
ACGATGGTAGAGGTGTCTTACAGGACTAGTGGGAAGAAGTTGAGTTGGGTTATTGTGATCTTCAA
GGAAGTTGAATTAACTTTGTTTTGAAGTCCGAGACCCCAGGAGTGACTTTTGTTTGTTTTTAGTT
ATGGCTCCGTCATTTTATTGCGTATAGATATGAGGTGGTATTGTTTACCTGGTAGTTTGCAACCA
TGGTTATATGCAGGCCGCCAACATCAGGGAAAGATGGTCCCAACGTATGGCCCATTGGAGGGTTC
TACAGAGAAATAAAGTTGGGGAACCTTTTGGTTTGCCTGCCATAAACCTCACTGTTGCTTTATTT
TCTCCGTCATAGCTTTCATTTTTCAGTTCTTTTCACCATCAACACGCACCAATCTCGCTAAAGAC
CACACAACCAAACAACACCTACACCCATCAAAAAACCCCAAATCC
Found at i:330725 original size:15 final size:15
Alignment explanation
Indices: 330682--330735 Score: 58
Period size: 15 Copynumber: 3.7 Consensus size: 15
330672 AACGGGTGAG
*
330682 TGGGGGGATGAGGGGA
1 TGGGGTGATG-GGGGA
*
330698 T-GAGTGA-GGGGGA
1 TGGGGTGATGGGGGA
330711 TGGGGTGATGGGGGA
1 TGGGGTGATGGGGGA
*
330726 TGAGGTGATG
1 TGGGGTGATG
330736 AAGGGATTGG
Statistics
Matches: 32, Mismatches: 4, Indels: 5
0.78 0.10 0.12
Matches are distributed among these distances:
13 6 0.19
14 6 0.19
15 19 0.59
16 1 0.03
ACGTcount: A:0.19, C:0.00, G:0.63, T:0.19
Consensus pattern (15 bp):
TGGGGTGATGGGGGA
Left flanking sequence: Indices 330182 -- 330681
TTTAACTGTGGTGTGTGCACACCACGGCCCGAATGGGGTTAAATTGGAGTAGGGGTTGCGGAGGC
AGTTGGCAATGGCAGGGGACAGGGGCTACATTCCGAGGTGGGTGCGGGCCCCCGGTGGTGGTGGA
GGATTGCTCGTATCGCACGCGTATCGCACGCGTATCGGGAGACGCGAGACCACGCGTAGCCTGAT
CAAAGGGGGCTGGTTGATAGGTGGAAGCGAGAGTGCAGGGAAGGGGTGATGGGGTGGTAATAGGG
GTGGTAATAGAGTGGTGGGAGACTGTGGAGGTGGTTGTAGAGGGTTGTTGGACGGGGAGTTCCGT
GGTAGCAATAGGGGTTTGTTTGTTTGTTTGTGTAGATTACGAGTTTACGAGTGAATGGCTCGGGC
ATTTGGCTAATGGCGGCTAAAGTGGCTTGGGACACTAGTGACCGATGGCACAAAGCAGACGCGGT
TTTGTGGTGAGCGGTAGGTCGCATGACAGACAGCGAACGGGTGAG
Right flanking sequence: Indices 330736 -- 331235
AAGGGATTGGCGGGATTGGCGGATTAGCAGGAGGGACATGTACGTGGTTTACGATGGTAGAGGTG
TCTTACAGGACTAGTGGGAAGAAGTTGAGTTGGGTTATTGTGATCTTCAAGGAAGTTGAATTAAC
TTTGTTTTGAAGTCCGAGACCCCAGGAGTGACTTTTGTTTGTTTTTAGTTATGGCTCCGTCATTT
TATTGCGTATAGATATGAGGTGGTATTGTTTACCTGGTAGTTTGCAACCATGGTTATATGCAGGC
CGCCAACATCAGGGAAAGATGGTCCCAACGTATGGCCCATTGGAGGGTTCTACAGAGAAATAAAG
TTGGGGAACCTTTTGGTTTGCCTGCCATAAACCTCACTGTTGCTTTATTTTCTCCGTCATAGCTT
TCATTTTTCAGTTCTTTTCACCATCAACACGCACCAATCTCGCTAAAGACCACACAACCAAACAA
CACCTACACCCATCAAAAAACCCCAAATCCCCACTCTAAACACCA
Found at i:331284 original size:21 final size:19
Alignment explanation
Indices: 331258--331313 Score: 58
Period size: 21 Copynumber: 2.8 Consensus size: 19
331248 ACCACTCCAA
331258 CCCACCCATCGTCCACCTCC
1 CCCACCCATCGTCCACC-CC
* *
331278 CCACACCTATCTTCCACCCC
1 CC-CACCCATCGTCCACCCC
* *
331298 CCTACCCTTCGTCCAC
1 CCCACCCATCGTCCAC
331314 ACCCATTCCT
Statistics
Matches: 29, Mismatches: 6, Indels: 3
0.76 0.16 0.08
Matches are distributed among these distances:
19 10 0.34
20 6 0.21
21 13 0.45
ACGTcount: A:0.16, C:0.61, G:0.04, T:0.20
Consensus pattern (19 bp):
CCCACCCATCGTCCACCCC
Left flanking sequence: Indices 330758 -- 331257
ATTAGCAGGAGGGACATGTACGTGGTTTACGATGGTAGAGGTGTCTTACAGGACTAGTGGGAAGA
AGTTGAGTTGGGTTATTGTGATCTTCAAGGAAGTTGAATTAACTTTGTTTTGAAGTCCGAGACCC
CAGGAGTGACTTTTGTTTGTTTTTAGTTATGGCTCCGTCATTTTATTGCGTATAGATATGAGGTG
GTATTGTTTACCTGGTAGTTTGCAACCATGGTTATATGCAGGCCGCCAACATCAGGGAAAGATGG
TCCCAACGTATGGCCCATTGGAGGGTTCTACAGAGAAATAAAGTTGGGGAACCTTTTGGTTTGCC
TGCCATAAACCTCACTGTTGCTTTATTTTCTCCGTCATAGCTTTCATTTTTCAGTTCTTTTCACC
ATCAACACGCACCAATCTCGCTAAAGACCACACAACCAAACAACACCTACACCCATCAAAAAACC
CCAAATCCCCACTCTAAACACCAACGCACTACACTACCACTCCAA
Right flanking sequence: Indices 331314 -- 331813
ACCCATTCCTTCCACCATCACCAAGCCGCATGAGCCGCACCAAAACATCACCATCACCAACCCCA
CCCATCCACCACACCCCACCACAATGCCGCTCGCAGAAAAGTACCTGATGGATATACCGCACGTG
ACGGCGGTGGAGCTCCCCCTCCACGTCAACAACCCCGACCGGGCCGTGGACATGCTTGGCGGACG
CAAACGGGTGGCCCAGGTGATCAACCACCGGGACAAGCTGGCCACCGCGATGAGCCACACGCCAT
TGGGCAACGTGCTCGAGCTCAAGCTCCGCCCGAAAGACCCCTTCCACCACCCTGTGCAGCTGCTG
TTCCTGGGGCTCGAGAAAGTGCTCCTCAAGGTGTCGGTGCCCAAGTCGCAGTTGCCCGAGAACTA
CAAGGACAAACCGCTCGCGGAGGTGCTTGCGGGCACCCGGTACAAGGTCCAGCCGGTGGCCATTG
TCGACAAGACCTACAGCTTCAAGCTGATTGCCGACTTCCAGGTGC
Done.