Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold94

Parameters: 2 7 7 80 10 50 500

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500

Length: 232530
ACGTcount: A:0.22, C:0.28, G:0.28, T:0.21

Warning! 1 characters in sequence are not A, C, G, or T


File 1 of 3

Found at i:4058 original size:11 final size:11

Alignment explanation


    Indices: 4037--4246  Score: 215
    Period size: 11  Copynumber: 18.6  Consensus size: 11

       4027 TCATAGCTCA

                        
       4037 ATAACCCAGGGT
          1 ATAA-CCAGGGT

                       
       4049 ATAACCAGGGT
          1 ATAACCAGGGT

                     * 
       4060 ATAACCAGGCT
          1 ATAACCAGGGT

            *           
       4071 GTAACCCAGGGT
          1 ATAA-CCAGGGT

                        
       4083 ATAACCCAGGGT
          1 ATAA-CCAGGGT

                     ** 
       4095 ATAACCCAGAAT
          1 ATAA-CCAGGGT

                  *     
       4107 AT-ACCCGGGCT
          1 ATAACCAGGG-T

            *        * 
       4118 GTAACCAGGCT
          1 ATAACCAGGGT

                     * 
       4129 ATAACCAGGCT
          1 ATAACCAGGGT

            *   *    * 
       4140 GTAATCAGGCT
          1 ATAACCAGGGT

                     * 
       4151 ATAACCAGGCT
          1 ATAACCAGGGT

            *        * 
       4162 GTAACCAGGCT
          1 ATAACCAGGGT

            *        * 
       4173 GTAACCAGGCT
          1 ATAACCAGGGT

                        
       4184 ATAACCCAGGGT
          1 ATAA-CCAGGGT

                       
       4196 ATAACCAGGGT
          1 ATAACCAGGGT

                       
       4207 ATAACCAGGGT
          1 ATAACCAGGGT

                       
       4218 ATAACCAGGGT
          1 ATAACCAGGGT

                       
       4229 ATAACCAGGGT
          1 ATAACCAGGGT

                   
       4240 ATAACCA
          1 ATAACCA

       4247 CGCTGTTACC


Statistics
Matches: 174,  Mismatches: 20, Indels: 9
        0.86            0.10        0.04

Matches are distributed among these distances:
  10    3  0.02
  11  123  0.71
  12   48  0.28

ACGTcount: A:0.34, C:0.24, G:0.24, T:0.18


Consensus pattern (11 bp):   
ATAACCAGGGT

Left flanking sequence: Indices 3537 -- 4036
CATGAAAGTATCAACCAAACATTCCATACAGCGTTCATGAGGTCTAGACTACTCCAGCTATTTAT
ACCGGAGGCTGCATGGCCGATTGATGGATGAGATTAAATGCATGGTGGAAAAGGGTTACTAGGTG
GAATTTTATTCAGCTCGAAGCAGGAATCTTGGCTTCGACACAATCTATGGACGCCATTCCAGAAG
CTGAATAAAAACTGATTGGTGTCCTGGAAACTCAGTTCTTAAGTTCTACACCCGTTATCCTTCCA
TTTTGATTGACTATATACCAGTACCGTAGTTCCATTTCATTTCTCATTATTGTAAAGCAATTCAA
TTTTGGGCAAGCGTCGAGGATGAGTGAGAGACAAAGTGACAGTAGAAAAAACACCGTGAGCAGAG
AGCCTTTGCTACTCATGGTCGCTGTTGGAAGCACCGACCATTCACGTTGGTGAACTTCACAGCTC
AACCAGGCTGTCGCTGTGGGCCATCTGCGGTGACTTCATAGCTCA


Right flanking sequence: Indices 4247 -- 4746
CGCTGTTACCAGGCATCACTGTTCGGTGCCACCTCCGGTGGACCTCACTGCTCAATAACCACGCT
GTCACCAGGCTTCGCTGTTCGGTGCCACCTCCGGTGGACCTCACCGCTCAATAACCACGCTGCCA
CCAAGCGTCGCTGTTCGGTGCCACCTCCGGTGGACCTCACAGCTCACTTCAACCCCAACTCAATA
TCCGCATCGATACAAAGACACGGGGTGTCCAGCGAACAAAACCCACAGTTGGCCCGCCGCCGCCG
CGACGAGCTGCTCAGGTCGTCCTTCAGCAGCACCGTGTGGATCTTCACCCCGTACTCGTCCTCCG
CCAACAAGTTCGTGATCTCGTTCCCCCCGGCCGCGGTGGTCTCCAAAATCATCCGGTCCACCACG
TCGTTGTCCAAGATCAAGTCGATGTCGCCCAGCAGCGGCTCGTCCACTGCAAACGGCGGCGGTGC
TGGTGCGGCCGCCACCACCTCGTCGGAGATCTTCGAGAAACTCCG



Found at i:4335 original size:61 final size:61

Alignment explanation


    Indices: 4240--4422  Score: 294
    Period size: 61  Copynumber: 3.0  Consensus size: 61

       4230 TAACCAGGGT

                         *          *                              *     
       4240 ATAACCACGCTGTTACCAGGCATCACTGTTCGGTGCCACCTCCGGTGGACCTCACTGCTCA
          1 ATAACCACGCTGTCACCAGGCATCGCTGTTCGGTGCCACCTCCGGTGGACCTCACAGCTCA

                                 *                                 *     
       4301 ATAACCACGCTGTCACCAGGCTTCGCTGTTCGGTGCCACCTCCGGTGGACCTCACCGCTCA
          1 ATAACCACGCTGTCACCAGGCATCGCTGTTCGGTGCCACCTCCGGTGGACCTCACAGCTCA

                        *     *  *                                       
       4362 ATAACCACGCTGCCACCAAGCGTCGCTGTTCGGTGCCACCTCCGGTGGACCTCACAGCTCA
          1 ATAACCACGCTGTCACCAGGCATCGCTGTTCGGTGCCACCTCCGGTGGACCTCACAGCTCA

       4423 CTTCAACCCC


Statistics
Matches: 114,  Mismatches: 8, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  61  114  1.00

ACGTcount: A:0.19, C:0.38, G:0.22, T:0.21


Consensus pattern (61 bp):   
ATAACCACGCTGTCACCAGGCATCGCTGTTCGGTGCCACCTCCGGTGGACCTCACAGCTCA

Left flanking sequence: Indices 3740 -- 4239
AAACTGATTGGTGTCCTGGAAACTCAGTTCTTAAGTTCTACACCCGTTATCCTTCCATTTTGATT
GACTATATACCAGTACCGTAGTTCCATTTCATTTCTCATTATTGTAAAGCAATTCAATTTTGGGC
AAGCGTCGAGGATGAGTGAGAGACAAAGTGACAGTAGAAAAAACACCGTGAGCAGAGAGCCTTTG
CTACTCATGGTCGCTGTTGGAAGCACCGACCATTCACGTTGGTGAACTTCACAGCTCAACCAGGC
TGTCGCTGTGGGCCATCTGCGGTGACTTCATAGCTCAATAACCCAGGGTATAACCAGGGTATAAC
CAGGCTGTAACCCAGGGTATAACCCAGGGTATAACCCAGAATATACCCGGGCTGTAACCAGGCTA
TAACCAGGCTGTAATCAGGCTATAACCAGGCTGTAACCAGGCTGTAACCAGGCTATAACCCAGGG
TATAACCAGGGTATAACCAGGGTATAACCAGGGTATAACCAGGGT


Right flanking sequence: Indices 4423 -- 4922
CTTCAACCCCAACTCAATATCCGCATCGATACAAAGACACGGGGTGTCCAGCGAACAAAACCCAC
AGTTGGCCCGCCGCCGCCGCGACGAGCTGCTCAGGTCGTCCTTCAGCAGCACCGTGTGGATCTTC
ACCCCGTACTCGTCCTCCGCCAACAAGTTCGTGATCTCGTTCCCCCCGGCCGCGGTGGTCTCCAA
AATCATCCGGTCCACCACGTCGTTGTCCAAGATCAAGTCGATGTCGCCCAGCAGCGGCTCGTCCA
CTGCAAACGGCGGCGGTGCTGGTGCGGCCGCCACCACCTCGTCGGAGATCTTCGAGAAACTCCGG
GCGGGCGCCCTCACCGGGCGGGCCTCCACCTTCGCCTTGGTCTTGTACTTGGCGCGGAGGTCCAA
GTAGTGGTTGATCTGCGAGTTGACCCACAGCTCGTGCTCCTCCTTGGGCGCCAACGGGCGCTTGG
CCGCCAGGTTCAAGATGCTCAGCAGCTTGTTGAGGTAGGCCAAGA



Found at i:5412 original size:9 final size:9

Alignment explanation


    Indices: 5387--5432  Score: 74
    Period size: 9  Copynumber: 5.1  Consensus size: 9

       5377 CTTAGCACCT

                     
       5387 CCGTTCGCA
          1 CCGTTCGCA

              **     
       5396 CCACTCGCA
          1 CCGTTCGCA

                     
       5405 CCGTTCGCA
          1 CCGTTCGCA

                     
       5414 CCGTTCGCA
          1 CCGTTCGCA

                     
       5423 CCGTTCGCA
          1 CCGTTCGCA

             
       5432 C
          1 C

       5433 TGACACCGTG


Statistics
Matches: 33,  Mismatches: 4, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
   9   33  1.00

ACGTcount: A:0.13, C:0.48, G:0.20, T:0.20


Consensus pattern (9 bp):   
CCGTTCGCA

Left flanking sequence: Indices 4887 -- 5386
TCAAGATGCTCAGCAGCTTGTTGAGGTAGGCCAAGAACTTGTTCAAGTCGTTGATGTTGTTGATG
GCGTCCAACAGGTCGGGGAACGCCAGCGGCGGTGCCACGGGCGCGGTGGCCAAGAGCAGCGCCGT
TCCCTGGGGGGTGTTGGTGGCCAGGGTGGTCATGAACGGCTTCAGCTTGATGACCCCCGGGGGCG
ACGACGGGGTGCGGAGGGCGTCGAAGGTGATGACCCCCAGCTTGACGAACGAGAGTTCTTTGATC
TGGTTGGTGATGACCTCGATGTAGTTGCGGATGAGCTCCTGTTCCTTGAGCTTGGCGAGGTAGCC
CATCTTGAGCTCGGCCACCTCCAGGGAGATGGGCCCGGGGGGAAGGGCGAGCGGCGGCGACGGCG
CGGGGGACGCCAGGGGAGAGGCGGCACCGTGCGAACTGGTTCCGTTCGTACTGGTACCATTGGCA
CCAACACCGTTCGAACTGGCACCGTTGGCACCGATCTTAGCACCT


Right flanking sequence: Indices 5433 -- 5932
TGACACCGTGCGCGCCTCCGTTCGCACTGGCACCGTTCACACTACCATTCGCACCGTTCGCACCA
CTCACTCCTCCGTTCCCACTCGCAGTCACTCCTCCACTCCCTCCGCCCACACTCCGCGCGAGCAC
CCGCGGGGCCTCGGGCACCGGCAGCAGCGCCAGCGTCGTCATCGCACTGCTCTTGGGCTTGACCT
TGGCCTTGACCTCCGGGGGCTCCTTCTTGACCTTGGCGCGCTTCTTGGGGCTCGGCTTGGCCGCG
GTCTTCTCCTCGGAGGTGGGCTTGCGCCCCGGGCGCGGGCGCGGGGGCAACACCCACCGCTTCAG
GGTGTTGAGCAGCAGCACCAACAGGTCCAGCAACAGCAGCTGCATCGGCACCAGCTTCAGCACCA
GTGCCAGGAACGGGATCTTCATCGGGGCCATCGCGGGTTTCGGGGCGATCGCGGGGCAGATCTTG
GGGTACTTGGCCCGCGGCGGGGGCGGGCGCGCCGCGAGAGGCATC



Found at i:6332 original size:6 final size:6

Alignment explanation


    Indices: 6316--6374  Score: 55
    Period size: 6  Copynumber: 9.8  Consensus size: 6

       6306 AAGTGCGGGT

                   *             *    *        *    *      *      *
       6316 GGTGCG AGTGCG GGTGCG AGTGCC GGTGCG AGTGCC GGTGCT GGTGCC
          1 GGTGCG GGTGCG GGTGCG GGTGCG GGTGCG GGTGCG GGTGCG GGTGCG

                        
       6364 GGTGCG GGTGC
          1 GGTGCG GGTGC

       6375 TCGAGCTCCG


Statistics
Matches: 41,  Mismatches: 12, Indels: 0
        0.77            0.23        0.00

Matches are distributed among these distances:
   6   41  1.00

ACGTcount: A:0.05, C:0.22, G:0.54, T:0.19


Consensus pattern (6 bp):   
GGTGCG

Left flanking sequence: Indices 5816 -- 6315
AGCACCAGTGCCAGGAACGGGATCTTCATCGGGGCCATCGCGGGTTTCGGGGCGATCGCGGGGCA
GATCTTGGGGTACTTGGCCCGCGGCGGGGGCGGGCGCGCCGCGAGAGGCATCTGGTGGCCGGCAC
CAGACGGCGGGGGGGCCGCTGCCCCCGGGGCGGCGGGGCGGGCCCGGGCGATGGCGGTCGGGGCC
GGGGGCGCTGGCGGGGCAGACAGGGGTTGCAGGGCCAGGCCGGGCAGGCCGGCCGGCCTTCGTGC
TATCGGGGACGGTCCCTTGGGGTCGACGTCCATGGCTAAGCTTTGCGACCGGGGCTGCTAGTGGT
TCGGGTCCGATATCTGGGGTCAAATTTTCGCGGTGCTAAAATCCCGCGGTCTCATAACCGTAGGG
GCGACCCGGGTGCACCACCCGGTGCGGCGCGGGCCCGCGCGCACAACTGGGGGGCCGGCGCCGGG
GGGCTCCGCATGTACGAGCCAGGCAGCGACGGGGCAAGTGCGGGT


Right flanking sequence: Indices 6375 -- 6874
TCGAGCTCCGCTGGCGGAGGCCACGCGCCACACCGAGATGAACCACCTCCAGTCGCAGATGAAGC
AGTTGGAGACCAACGTGGCCAAGATGGCCGGGCACATCCGCACGATGTGCCAGCAGTACGAGCTG
ATCGAGCAGATGGGGAAGCTCCACGGGGCGTACTTTATGGCGAGCCACCGGGTGTTTGAGTCGGA
TAACTTTGACAGTGAGGAAGGGAAGGGAGGAAGAGGAGGGTAAGGAGGAGAGAGAGAGGGAGGAG
TGGAGAGGGGAGAGGGGAGACGAGAGGGTGATGGGGGAAGACTCTGTTTAATTCGTGAGCTAAGG
TCTTGACTCTTTTGACTCGGTGTTCTTCCTTTCCTCACGTTCCCTTCCCGTTCCTTTTGGTTGTT
TACTTTTGATCTCGTAAACCACCCGGGTGGCTCCGACTCGTGACCGCTGCGGGCGACCCCATGGG
TGACCAGGTGGTCACCAGGGCTCCTCCGTCTACTTCGCGGCCTCC



Found at i:6333 original size:12 final size:12

Alignment explanation


    Indices: 6316--6374  Score: 84
    Period size: 12  Copynumber: 4.9  Consensus size: 12

       6306 AAGTGCGGGT

                       *
       6316 GGTGCGAGTGCG
          1 GGTGCGAGTGCC

                        
       6328 GGTGCGAGTGCC
          1 GGTGCGAGTGCC

                        
       6340 GGTGCGAGTGCC
          1 GGTGCGAGTGCC

                         
       6352 GGTGCTG-GTGCC
          1 GGTGC-GAGTGCC

                  *    
       6364 GGTGCGGGTGC
          1 GGTGCGAGTGC

       6375 TCGAGCTCCG


Statistics
Matches: 44,  Mismatches: 1, Indels: 4
        0.90            0.02        0.08

Matches are distributed among these distances:
  11    1  0.02
  12   42  0.95
  13    1  0.02

ACGTcount: A:0.05, C:0.22, G:0.54, T:0.19


Consensus pattern (12 bp):   
GGTGCGAGTGCC

Left flanking sequence: Indices 5816 -- 6315
AGCACCAGTGCCAGGAACGGGATCTTCATCGGGGCCATCGCGGGTTTCGGGGCGATCGCGGGGCA
GATCTTGGGGTACTTGGCCCGCGGCGGGGGCGGGCGCGCCGCGAGAGGCATCTGGTGGCCGGCAC
CAGACGGCGGGGGGGCCGCTGCCCCCGGGGCGGCGGGGCGGGCCCGGGCGATGGCGGTCGGGGCC
GGGGGCGCTGGCGGGGCAGACAGGGGTTGCAGGGCCAGGCCGGGCAGGCCGGCCGGCCTTCGTGC
TATCGGGGACGGTCCCTTGGGGTCGACGTCCATGGCTAAGCTTTGCGACCGGGGCTGCTAGTGGT
TCGGGTCCGATATCTGGGGTCAAATTTTCGCGGTGCTAAAATCCCGCGGTCTCATAACCGTAGGG
GCGACCCGGGTGCACCACCCGGTGCGGCGCGGGCCCGCGCGCACAACTGGGGGGCCGGCGCCGGG
GGGCTCCGCATGTACGAGCCAGGCAGCGACGGGGCAAGTGCGGGT


Right flanking sequence: Indices 6375 -- 6874
TCGAGCTCCGCTGGCGGAGGCCACGCGCCACACCGAGATGAACCACCTCCAGTCGCAGATGAAGC
AGTTGGAGACCAACGTGGCCAAGATGGCCGGGCACATCCGCACGATGTGCCAGCAGTACGAGCTG
ATCGAGCAGATGGGGAAGCTCCACGGGGCGTACTTTATGGCGAGCCACCGGGTGTTTGAGTCGGA
TAACTTTGACAGTGAGGAAGGGAAGGGAGGAAGAGGAGGGTAAGGAGGAGAGAGAGAGGGAGGAG
TGGAGAGGGGAGAGGGGAGACGAGAGGGTGATGGGGGAAGACTCTGTTTAATTCGTGAGCTAAGG
TCTTGACTCTTTTGACTCGGTGTTCTTCCTTTCCTCACGTTCCCTTCCCGTTCCTTTTGGTTGTT
TACTTTTGATCTCGTAAACCACCCGGGTGGCTCCGACTCGTGACCGCTGCGGGCGACCCCATGGG
TGACCAGGTGGTCACCAGGGCTCCTCCGTCTACTTCGCGGCCTCC



Found at i:6614 original size:19 final size:18

Alignment explanation


    Indices: 6583--6634  Score: 54
    Period size: 18  Copynumber: 2.8  Consensus size: 18

       6573 CTTTGACAGT

                                
       6583 GAGGAAGGGAAGGGAGGA-A
          1 GAGG-AGGGAA-GGAGGAGA

                               
       6602 GAGGAGGGTAAGGAGGAGA
          1 GAGGAGGG-AAGGAGGAGA

                           
       6621 GAGAGAGGG-AGGAG
          1 GAG-GAGGGAAGGAG

       6635 TGGAGAGGGG


Statistics
Matches: 30,  Mismatches: 0, Indels: 7
        0.81            0.00        0.19

Matches are distributed among these distances:
  18   15  0.50
  19   10  0.33
  20    5  0.17

ACGTcount: A:0.38, C:0.00, G:0.60, T:0.02


Consensus pattern (18 bp):   
GAGGAGGGAAGGAGGAGA

Left flanking sequence: Indices 6083 -- 6582
GACGGTCCCTTGGGGTCGACGTCCATGGCTAAGCTTTGCGACCGGGGCTGCTAGTGGTTCGGGTC
CGATATCTGGGGTCAAATTTTCGCGGTGCTAAAATCCCGCGGTCTCATAACCGTAGGGGCGACCC
GGGTGCACCACCCGGTGCGGCGCGGGCCCGCGCGCACAACTGGGGGGCCGGCGCCGGGGGGCTCC
GCATGTACGAGCCAGGCAGCGACGGGGCAAGTGCGGGTGGTGCGAGTGCGGGTGCGAGTGCCGGT
GCGAGTGCCGGTGCTGGTGCCGGTGCGGGTGCTCGAGCTCCGCTGGCGGAGGCCACGCGCCACAC
CGAGATGAACCACCTCCAGTCGCAGATGAAGCAGTTGGAGACCAACGTGGCCAAGATGGCCGGGC
ACATCCGCACGATGTGCCAGCAGTACGAGCTGATCGAGCAGATGGGGAAGCTCCACGGGGCGTAC
TTTATGGCGAGCCACCGGGTGTTTGAGTCGGATAACTTTGACAGT


Right flanking sequence: Indices 6635 -- 7134
TGGAGAGGGGAGAGGGGAGACGAGAGGGTGATGGGGGAAGACTCTGTTTAATTCGTGAGCTAAGG
TCTTGACTCTTTTGACTCGGTGTTCTTCCTTTCCTCACGTTCCCTTCCCGTTCCTTTTGGTTGTT
TACTTTTGATCTCGTAAACCACCCGGGTGGCTCCGACTCGTGACCGCTGCGGGCGACCCCATGGG
TGACCAGGTGGTCACCAGGGCTCCTCCGTCTACTTCGCGGCCTCCTCCTCCGGTGGGCCCTCCCG
CGGTGCCTCCTGTGGGCCTCCGCGTGCCCGTTGTCCAGACGGCGTCCGGTCGCTGGCGATGGCGT
CATCGCGCGTATCGCCTGAGAAGAAGAGACGAGCGACGGAGACGAGCGAAACGAAGGAATGGGTT
TTAATAGGTTTGTATGAGTAATAGTAATTGTATGGAATTTTCATAGAAATTGTGTTTTTCACTAG
TTTTACGTTTTTGGTTGGCATTGGTAGTGCTGACTTGCGTGCCCT



Found at i:7563 original size:21 final size:22

Alignment explanation


    Indices: 7534--7585  Score: 63
    Period size: 21  Copynumber: 2.5  Consensus size: 22

       7524 GTGAGGCCAG

                *        *        
       7534 AGACAAGAGTAAGGCCAGA-CA
          1 AGACCAGAGTAAGACCAGAGCA

                                * 
       7555 AGACCAGAG-AAGACCAGAGTA
          1 AGACCAGAGTAAGACCAGAGCA

                      
       7576 AGACCAGAGT
          1 AGACCAGAGT

       7586 GGACAACGTT


Statistics
Matches: 26,  Mismatches: 3, Indels: 3
        0.81            0.09        0.09

Matches are distributed among these distances:
  20    8  0.31
  21   18  0.69

ACGTcount: A:0.46, C:0.19, G:0.29, T:0.06


Consensus pattern (22 bp):   
AGACCAGAGTAAGACCAGAGCA

Left flanking sequence: Indices 7034 -- 7533
TTGTATGAGTAATAGTAATTGTATGGAATTTTCATAGAAATTGTGTTTTTCACTAGTTTTACGTT
TTTGGTTGGCATTGGTAGTGCTGACTTGCGTGCCCTGGTTGGTCCAGTGTGGGAGCAATAGCAAA
TAGACTATGGGTGGTGAAGTCATTGAACATCAGTTGGAGTGATTGAGACTAATTCGAGACTGCGA
TTAGAACAAATCCTGTTACAAAAACGATAATGTTAGCCCTATAGATTACCTAGAACCCTCCCTCC
CTTGGCTCGGTGGCTACCTCATCAGGTGTCTCAGATCGGGGCTATACGCAGGACATCTGATAAAG
CAATACTAAGGCAGCACAAAGAAGAGGTGATCCGGGGTGGTATGAGCTGATCCGGCTGAGTACCG
GTGGCATTGAAGGGGTGAAAAGCAGATGAGTTGTTCGCTTCGCTGTGGTCTGGACTTTTCTCAGT
CTGTGGTTGTCGTTGGGGCCCTCGACTAGTAGCAAGTGAGGCCAG


Right flanking sequence: Indices 7586 -- 8085
GGACAACGTTCCATCTGGTGATCGAGTAGGTAGAGCTGTGCTGGCCTCAAGTCTACATCTATTCA
CCACAGACAGAGTAGATAATCGAGTTGATCCACTGGTATGGCCTCTTCCATGGCTGGTTGATTTA
TTAAATCAGGGCAGTAACTAACCAATGCTCGGGCAACCCGATAGAGACGTAGTCAGAGGACAATT
GAGACGTATCCAATGAGACATACCTAGAAAACACACCCAGTGAGACGTACCATTGGTTCGGCTTC
CACTTGACACCAACCACTCAATTTACCCAATGACTGCTTTCACCTATCTCTCCAACCATCACACT
ACCATACCACACTAACAAACCAACTCCTAACCCTAACACCAATCCTCCACTCTTTACCAGTTTCA
ACCTTTTCAATCTCTACTCTTCTTCATCACATCTATCCTTCCCTTCATTTCACCTCCCATCCTCC
TCCCATCCTCATTCCTTCCTTCTTTCCTTCCTTCTTCCCCCTATC



Found at i:7567 original size:10 final size:11

Alignment explanation


    Indices: 7534--7585  Score: 63
    Period size: 10  Copynumber: 4.9  Consensus size: 11

       7524 GTGAGGCCAG

                *      
       7534 AGACAAGAGTA
          1 AGACCAGAGTA

              *      * 
       7545 AGGCCAGA-CA
          1 AGACCAGAGTA

                       
       7555 AGACCAGAG-A
          1 AGACCAGAGTA

                       
       7565 AGACCAGAGTA
          1 AGACCAGAGTA

                      
       7576 AGACCAGAGT
          1 AGACCAGAGT

       7586 GGACAACGTT


Statistics
Matches: 35,  Mismatches: 4, Indels: 4
        0.81            0.09        0.09

Matches are distributed among these distances:
  10   18  0.51
  11   17  0.49

ACGTcount: A:0.46, C:0.19, G:0.29, T:0.06


Consensus pattern (11 bp):   
AGACCAGAGTA

Left flanking sequence: Indices 7034 -- 7533
TTGTATGAGTAATAGTAATTGTATGGAATTTTCATAGAAATTGTGTTTTTCACTAGTTTTACGTT
TTTGGTTGGCATTGGTAGTGCTGACTTGCGTGCCCTGGTTGGTCCAGTGTGGGAGCAATAGCAAA
TAGACTATGGGTGGTGAAGTCATTGAACATCAGTTGGAGTGATTGAGACTAATTCGAGACTGCGA
TTAGAACAAATCCTGTTACAAAAACGATAATGTTAGCCCTATAGATTACCTAGAACCCTCCCTCC
CTTGGCTCGGTGGCTACCTCATCAGGTGTCTCAGATCGGGGCTATACGCAGGACATCTGATAAAG
CAATACTAAGGCAGCACAAAGAAGAGGTGATCCGGGGTGGTATGAGCTGATCCGGCTGAGTACCG
GTGGCATTGAAGGGGTGAAAAGCAGATGAGTTGTTCGCTTCGCTGTGGTCTGGACTTTTCTCAGT
CTGTGGTTGTCGTTGGGGCCCTCGACTAGTAGCAAGTGAGGCCAG


Right flanking sequence: Indices 7586 -- 8085
GGACAACGTTCCATCTGGTGATCGAGTAGGTAGAGCTGTGCTGGCCTCAAGTCTACATCTATTCA
CCACAGACAGAGTAGATAATCGAGTTGATCCACTGGTATGGCCTCTTCCATGGCTGGTTGATTTA
TTAAATCAGGGCAGTAACTAACCAATGCTCGGGCAACCCGATAGAGACGTAGTCAGAGGACAATT
GAGACGTATCCAATGAGACATACCTAGAAAACACACCCAGTGAGACGTACCATTGGTTCGGCTTC
CACTTGACACCAACCACTCAATTTACCCAATGACTGCTTTCACCTATCTCTCCAACCATCACACT
ACCATACCACACTAACAAACCAACTCCTAACCCTAACACCAATCCTCCACTCTTTACCAGTTTCA
ACCTTTTCAATCTCTACTCTTCTTCATCACATCTATCCTTCCCTTCATTTCACCTCCCATCCTCC
TCCCATCCTCATTCCTTCCTTCTTTCCTTCCTTCTTCCCCCTATC



Found at i:8069 original size:12 final size:12

Alignment explanation


    Indices: 8052--8076  Score: 50
    Period size: 12  Copynumber: 2.1  Consensus size: 12

       8042 CCCATCCTCA

                        
       8052 TTCCTTCCTTCT
          1 TTCCTTCCTTCT

                        
       8064 TTCCTTCCTTCT
          1 TTCCTTCCTTCT

             
       8076 T
          1 T

       8077 CCCCCTATCT


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   13  1.00

ACGTcount: A:0.00, C:0.40, G:0.00, T:0.60


Consensus pattern (12 bp):   
TTCCTTCCTTCT

Left flanking sequence: Indices 7552 -- 8051
ACAAGACCAGAGAAGACCAGAGTAAGACCAGAGTGGACAACGTTCCATCTGGTGATCGAGTAGGT
AGAGCTGTGCTGGCCTCAAGTCTACATCTATTCACCACAGACAGAGTAGATAATCGAGTTGATCC
ACTGGTATGGCCTCTTCCATGGCTGGTTGATTTATTAAATCAGGGCAGTAACTAACCAATGCTCG
GGCAACCCGATAGAGACGTAGTCAGAGGACAATTGAGACGTATCCAATGAGACATACCTAGAAAA
CACACCCAGTGAGACGTACCATTGGTTCGGCTTCCACTTGACACCAACCACTCAATTTACCCAAT
GACTGCTTTCACCTATCTCTCCAACCATCACACTACCATACCACACTAACAAACCAACTCCTAAC
CCTAACACCAATCCTCCACTCTTTACCAGTTTCAACCTTTTCAATCTCTACTCTTCTTCATCACA
TCTATCCTTCCCTTCATTTCACCTCCCATCCTCCTCCCATCCTCA


Right flanking sequence: Indices 8077 -- 8576
CCCCCTATCTTTTTCCATTCTTCCTTCCTTTCTCTCCCTCCTCCCTCCTCTTGCTGGTGTGCATA
CTCCGATCGCTGGCCTCCGCACCGCACCGCCCTCCGCACTGTCGCACCCACTGCACCCACTGCTC
CCACGCCACCCCTCAATTAACCCCCCTCCCCCCCTTCCCCCCCCAATTGACCTTCCCTGCATCGC
CCCTACGCACCCCTCCCCATCCCCTCCCCACCCCATCACCTTCCCATGGGCATTCTCAACGACCA
GGACCGGGAAAAGGTCAAGCGGCACATCCCCAAGGCCGCCAACAAGATCATCGACGCCACGGTGG
CCCGGCTCTACATCGCCTACCCGGACCACCTGGCGTGGCAGTACACGGGGCTCGTCGGCGCCATC
GCCCTCGTCGACGACCTCGTGGGGCACACCTTCTTCCTCAAGATGGTGGACATCTTGGGCAACCA
GGGCGTGGTGTGGGACCAGGAGCTCTACGTCAACTTCGAGTACAA



Found at i:8109 original size:12 final size:11

Alignment explanation


    Indices: 8052--8106  Score: 51
    Period size: 11  Copynumber: 4.9  Consensus size: 11

       8042 CCCATCCTCA

                       
       8052 TTCCTTCCTTC
          1 TTCCTTCCTTC

                        
       8063 TTTCCTTCCTTC
          1 -TTCCTTCCTTC

                 *      
       8075 TTCC-CCCTATC
          1 TTCCTTCCT-TC

               *        
       8086 TT-TTTCCATTC
          1 TTCCTTCC-TTC

                      
       8097 TTCCTTCCTT
          1 TTCCTTCCTT

       8107 TCTCTCCCTC


Statistics
Matches: 35,  Mismatches: 4, Indels: 9
        0.73            0.08        0.19

Matches are distributed among these distances:
  10    3  0.09
  11   16  0.46
  12   16  0.46

ACGTcount: A:0.04, C:0.42, G:0.00, T:0.55


Consensus pattern (11 bp):   
TTCCTTCCTTC

Left flanking sequence: Indices 7552 -- 8051
ACAAGACCAGAGAAGACCAGAGTAAGACCAGAGTGGACAACGTTCCATCTGGTGATCGAGTAGGT
AGAGCTGTGCTGGCCTCAAGTCTACATCTATTCACCACAGACAGAGTAGATAATCGAGTTGATCC
ACTGGTATGGCCTCTTCCATGGCTGGTTGATTTATTAAATCAGGGCAGTAACTAACCAATGCTCG
GGCAACCCGATAGAGACGTAGTCAGAGGACAATTGAGACGTATCCAATGAGACATACCTAGAAAA
CACACCCAGTGAGACGTACCATTGGTTCGGCTTCCACTTGACACCAACCACTCAATTTACCCAAT
GACTGCTTTCACCTATCTCTCCAACCATCACACTACCATACCACACTAACAAACCAACTCCTAAC
CCTAACACCAATCCTCCACTCTTTACCAGTTTCAACCTTTTCAATCTCTACTCTTCTTCATCACA
TCTATCCTTCCCTTCATTTCACCTCCCATCCTCCTCCCATCCTCA


Right flanking sequence: Indices 8107 -- 8606
TCTCTCCCTCCTCCCTCCTCTTGCTGGTGTGCATACTCCGATCGCTGGCCTCCGCACCGCACCGC
CCTCCGCACTGTCGCACCCACTGCACCCACTGCTCCCACGCCACCCCTCAATTAACCCCCCTCCC
CCCCTTCCCCCCCCAATTGACCTTCCCTGCATCGCCCCTACGCACCCCTCCCCATCCCCTCCCCA
CCCCATCACCTTCCCATGGGCATTCTCAACGACCAGGACCGGGAAAAGGTCAAGCGGCACATCCC
CAAGGCCGCCAACAAGATCATCGACGCCACGGTGGCCCGGCTCTACATCGCCTACCCGGACCACC
TGGCGTGGCAGTACACGGGGCTCGTCGGCGCCATCGCCCTCGTCGACGACCTCGTGGGGCACACC
TTCTTCCTCAAGATGGTGGACATCTTGGGCAACCAGGGCGTGGTGTGGGACCAGGAGCTCTACGT
CAACTTCGAGTACAACCAGGACCGCAAGTTCTTCCACACCTTCGA



Found at i:9126 original size:15 final size:15

Alignment explanation


    Indices: 9106--9140  Score: 70
    Period size: 15  Copynumber: 2.3  Consensus size: 15

       9096 CGACTCGTCG

                           
       9106 AGCCCCGCCCCCGCC
          1 AGCCCCGCCCCCGCC

                           
       9121 AGCCCCGCCCCCGCC
          1 AGCCCCGCCCCCGCC

                 
       9136 AGCCC
          1 AGCCC

       9141 GGCGCAGCAC


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   20  1.00

ACGTcount: A:0.09, C:0.71, G:0.20, T:0.00


Consensus pattern (15 bp):   
AGCCCCGCCCCCGCC

Left flanking sequence: Indices 8606 -- 9105
AGATCGAGGACTGCCTCGTGGGGCTCCTCTTCGAGGACACCAAGGACGCCGCCCACTTCTACAAG
AAGGTGTGCACCCGCACCAAGCACGCGCTGAAGGCCACCGCCAACAACAAGAACGCGGTGGCGCT
CCGGCTGCGCGCGGCCCCGGCGGCGCCCTCGGTGGGCACCCGCGGCGAGCGCGTGGACGCCGCCA
CGGGGGAGCGCCAGCGCTTTGCCCGCGGGGTGTTGTACTACGACGACGTGCCGCCCCCCGAGTGG
CGGCTGTTGTACAGCGAGCTTGCGGCCGCGGGCATTTCCGAGGACATGATTGCCGACAACCGCCA
GTTCATCAAGGACTACATTGCCCAGCAGGGCGGCCCCCTCGTGGGGTTGGAGCCCCCGATCCCGC
GCCGCCACGCCCAGCCGTCGCCCCCGGTGAGCGCCAGCGGCAGCACGAAAAAGAAGGCGCCGCCG
CCGCCGCCCCCGGGCGCGCCCAGCGGCCCCGCCAGCGACTCGTCG


Right flanking sequence: Indices 9141 -- 9640
GGCGCAGCACCGGTTGCCCCCGCAGCACCTGGCGGCGCCCACCCCGACCCACAGCGCGGCCGCCC
CGCCGCCGCCCCCGGTGGCGGCGCCGGCCTCCAGCGGCCTGGACCCGCTGGCGCTGGCGAGCCCC
GAGCCCACCCCGCAGCGCACGCCGTCGTCGCGGTTCCGGGTGCCGCCCCCGTTGTCGACGGCGCC
CACGGTGTCCGGGGCCCGCGACCGCCCGCTCCCAGACTTGCCCCAGCTGCCGCAGTCGCCGGCGG
GGCACCCGTCGCTCCCGGCTCGAGGACCTGCGCCGCCGCCCCGGGGCAACGCCCCGCCAGCACCG
CCGCCGCGCAACGCGTCGGGGCCACCGCCCCCACCGCCGCGGGCACGCAACGCCACGGGGCAGGC
AGCACCTCCGCCGCCTCCTCCCCGGGCGCGGGGAGCGGTGCCTCCTCCGCCACCGCGAGCCACGC
AGGCGGCACCAGTCCAACCCCAGCCCACGGCGCCCCAGACCCCGG



Found at i:9633 original size:15 final size:15

Alignment explanation


    Indices: 9613--9662  Score: 57
    Period size: 15  Copynumber: 3.1  Consensus size: 15

       9603 ACCAGTCCAA

                           
       9613 CCCCAGCCCACGGCG
          1 CCCCAGCCCACGGCG

                               
       9628 CCCCAGACCC-CGGTGCAG
          1 CCCCAG-CCCAC-G-GC-G

                           
       9646 CCCCAGCCCACGGCG
          1 CCCCAGCCCACGGCG

              
       9661 CC
          1 CC

       9663 GCAGGCGCAC


Statistics
Matches: 30,  Mismatches: 0, Indels: 10
        0.75            0.00        0.25

Matches are distributed among these distances:
  15   10  0.33
  16    6  0.20
  17    6  0.20
  18    8  0.27

ACGTcount: A:0.14, C:0.58, G:0.26, T:0.02


Consensus pattern (15 bp):   
CCCCAGCCCACGGCG

Left flanking sequence: Indices 9113 -- 9612
CCCCCGCCAGCCCCGCCCCCGCCAGCCCGGCGCAGCACCGGTTGCCCCCGCAGCACCTGGCGGCG
CCCACCCCGACCCACAGCGCGGCCGCCCCGCCGCCGCCCCCGGTGGCGGCGCCGGCCTCCAGCGG
CCTGGACCCGCTGGCGCTGGCGAGCCCCGAGCCCACCCCGCAGCGCACGCCGTCGTCGCGGTTCC
GGGTGCCGCCCCCGTTGTCGACGGCGCCCACGGTGTCCGGGGCCCGCGACCGCCCGCTCCCAGAC
TTGCCCCAGCTGCCGCAGTCGCCGGCGGGGCACCCGTCGCTCCCGGCTCGAGGACCTGCGCCGCC
GCCCCGGGGCAACGCCCCGCCAGCACCGCCGCCGCGCAACGCGTCGGGGCCACCGCCCCCACCGC
CGCGGGCACGCAACGCCACGGGGCAGGCAGCACCTCCGCCGCCTCCTCCCCGGGCGCGGGGAGCG
GTGCCTCCTCCGCCACCGCGAGCCACGCAGGCGGCACCAGTCCAA


Right flanking sequence: Indices 9663 -- 10162
GCAGGCGCACCAGATGCCGCCGCCGCCCCCGGCGCGCAACGTCCCTCCGCCGCCAGCACAGGCAC
CTCAGCAGGCAGCGGTGCCTCCTCCTCCTCAGCAGACAGGGGGGGTACCCCCACCTCCTCCTCCC
ATGCCTCCGTCCATGCAGGCACCTCCCGCCGGAGGCAGCGCCCCTCCGCCGCCGCCGCCGTTACC
CCCGGCCGGCGCGGGCGGCCCCCCTCCTCCTCCCCCGCCGATGCCAGCGATCGGCGGCGACTCCG
GCCCGGCCCCGCCGCTCCCCCAGGTGGACGGCGGGCGCGACGCGTTGTTGGCGCTGATCCGGGGC
GCTGGGGGCATAGGGGCTTTGAAAAAGACCGACAAGTCGCAGTTGGAGCGGCCCAACGTGTTGTT
GGCGGAGGCCCGGGGCGAGCCCGTGGCGCCGCCGCCCAGCAGTGGCCCCGGAGGCGGCGGGGGCG
GGCTTGCCGATGCGTTAGCGGCTGCGTTGAGCCAGCGCAAGAACA



Found at i:10740 original size:13 final size:13

Alignment explanation


    Indices: 10733--10786  Score: 99
    Period size: 13  Copynumber: 4.2  Consensus size: 13

      10723 TTTGGTGGTT

                         
      10733 TTCGTTGGTAGTG
          1 TTCGTTGGTAGTG

                         
      10746 TTCGTTGGTAGTG
          1 TTCGTTGGTAGTG

                         
      10759 TTCGTTGGTAGTG
          1 TTCGTTGGTAGTG

                      *  
      10772 TTCGTTGGTAATG
          1 TTCGTTGGTAGTG

              
      10785 TT
          1 TT

      10787 TTCGATGGTA


Statistics
Matches: 40,  Mismatches: 1, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
  13   40  1.00

ACGTcount: A:0.09, C:0.07, G:0.35, T:0.48


Consensus pattern (13 bp):   
TTCGTTGGTAGTG

Left flanking sequence: Indices 10233 -- 10732
TGTAGGTTTGTAGGTGGTGGGTCTGTAGTGACTGGGGGAGCGAGTTTGAGTTGAGGGTTAAAGAG
TTGACCAGGGTGGTAAGTGGACTGGTTTGTGTTTAAGAGAACGTTCACGAATGTTCGCTGTTTGT
GGTGTTTGTGCAGAGGTGGACATTTGACAAGTATTTTTGTTAGAGAGTGAGCAAATCCATACTCA
CGGTAGTTAAAATGTGATCATTCAACACCAACTGAGTGTAAAAAAAATACAATAAAAGAGTTGTT
TCGCCACTTCTCTTATTTTATCAATGGCTACACCCCTCTTTCGTTTATACGTCGCTTGTATCCCC
AAAACCTTGCTGCCTATTCTGAACGTCCCATGCACGAGTCTGCAAGACCCGCATATGGTTGCAAA
TATGAGTATTTACTGTCCTATATGTATGCTGTGAGCAGTAGGCCTAAGGCTCTATCTGTCTCCGA
TATGAGTTTGCTTTTTAAAAGACTTTTCCGTTTGCTTTGGTGGTT


Right flanking sequence: Indices 10787 -- 11286
TTCGATGGTAGTGGTTTCTTTCTGGCCATCGCCAACCCATTTCGCCACGCTGTCCCCTCTTCTAG
TGTCGTATCATGTCCATCAACTCCAACTCGTCGTCTATCTGCTTCCCCGCAAGCGCCTGGGCCGC
CATCACCCGCGCTTTGTCCACGATAGGCACGATCTTGAACGGGCTCCACCCCTGGCGGTCGTGGT
ACTCGTTGATCCGCTGGTACCGCTCGATGATCTCCTCGATCACCTCGTCCCGCTCCACCATGATC
CCGTCCGCCACCTCCACCTGGTCCCACTCGTCGGGCAATCCACACGTAGCCCACTGGGAGTCGGA
GTAGATCCGGGCTGGTCGGTTGTAGGTGCCCAGGTCCATGGCACCGCAGATATCCCGCACAGCAC
GGTGGAGCGCCCCCAACGACAAGTTGAGACTCAGCATCACCGTGGTGGTCAACGGGTTGATCACC
AACAACAACTGGCTGACGTTTCTGGGGTCGTTGGGGCCGTAGTCC



Found at i:10753 original size:26 final size:26

Alignment explanation


    Indices: 10724--10799  Score: 107
    Period size: 26  Copynumber: 2.8  Consensus size: 26

      10714 TCCGTTTGCT

                 *                    
      10724 TTGGTGGTTTTCGTTGGTAGTGTTCG
          1 TTGGTAGTTTTCGTTGGTAGTGTTCG

                    *                 
      10750 TTGGTAGTGTTCGTTGGTAGTGTTCG
          1 TTGGTAGTTTTCGTTGGTAGTGTTCG

                           *        
      10776 TTGGTAATGTTTTCGATGGTAGTG
          1 TTGGT-A-GTTTTCGTTGGTAGTG

      10800 GTTTCTTTCT


Statistics
Matches: 44,  Mismatches: 4, Indels: 2
        0.88            0.08        0.04

Matches are distributed among these distances:
  26   29  0.66
  27    1  0.02
  28   14  0.32

ACGTcount: A:0.09, C:0.07, G:0.37, T:0.47


Consensus pattern (26 bp):   
TTGGTAGTTTTCGTTGGTAGTGTTCG

Left flanking sequence: Indices 10224 -- 10723
TTGGTGGTTTGTAGGTTTGTAGGTGGTGGGTCTGTAGTGACTGGGGGAGCGAGTTTGAGTTGAGG
GTTAAAGAGTTGACCAGGGTGGTAAGTGGACTGGTTTGTGTTTAAGAGAACGTTCACGAATGTTC
GCTGTTTGTGGTGTTTGTGCAGAGGTGGACATTTGACAAGTATTTTTGTTAGAGAGTGAGCAAAT
CCATACTCACGGTAGTTAAAATGTGATCATTCAACACCAACTGAGTGTAAAAAAAATACAATAAA
AGAGTTGTTTCGCCACTTCTCTTATTTTATCAATGGCTACACCCCTCTTTCGTTTATACGTCGCT
TGTATCCCCAAAACCTTGCTGCCTATTCTGAACGTCCCATGCACGAGTCTGCAAGACCCGCATAT
GGTTGCAAATATGAGTATTTACTGTCCTATATGTATGCTGTGAGCAGTAGGCCTAAGGCTCTATC
TGTCTCCGATATGAGTTTGCTTTTTAAAAGACTTTTCCGTTTGCT


Right flanking sequence: Indices 10800 -- 11299
GTTTCTTTCTGGCCATCGCCAACCCATTTCGCCACGCTGTCCCCTCTTCTAGTGTCGTATCATGT
CCATCAACTCCAACTCGTCGTCTATCTGCTTCCCCGCAAGCGCCTGGGCCGCCATCACCCGCGCT
TTGTCCACGATAGGCACGATCTTGAACGGGCTCCACCCCTGGCGGTCGTGGTACTCGTTGATCCG
CTGGTACCGCTCGATGATCTCCTCGATCACCTCGTCCCGCTCCACCATGATCCCGTCCGCCACCT
CCACCTGGTCCCACTCGTCGGGCAATCCACACGTAGCCCACTGGGAGTCGGAGTAGATCCGGGCT
GGTCGGTTGTAGGTGCCCAGGTCCATGGCACCGCAGATATCCCGCACAGCACGGTGGAGCGCCCC
CAACGACAAGTTGAGACTCAGCATCACCGTGGTGGTCAACGGGTTGATCACCAACAACAACTGGC
TGACGTTTCTGGGGTCGTTGGGGCCGTAGTCCACGCCTATCCCGG



Found at i:12245 original size:12 final size:12

Alignment explanation


    Indices: 12238--12267  Score: 51
    Period size: 12  Copynumber: 2.5  Consensus size: 12

      12228 ACACCAGTAC

                        
      12238 GCAAACCAATAA
          1 GCAAACCAATAA

                     *  
      12250 GCAAACCAACAA
          1 GCAAACCAATAA

                  
      12262 GCAAAC
          1 GCAAAC

      12268 ACTGTTGTTA


Statistics
Matches: 17,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  12   17  1.00

ACGTcount: A:0.57, C:0.30, G:0.10, T:0.03


Consensus pattern (12 bp):   
GCAAACCAATAA

Left flanking sequence: Indices 11738 -- 12237
CGTCACCATTGCTTTGCCCTCGTTACCGGAACTGGCGTAATCCCCGTTTCCGTTCAGCCGTGCAC
GCATCGACCGGGTTTAAGCCTGAAAGAAACCCGTGAACACGAGCCCCGCGCGATTGGCAAGATTG
GCAACGGTACGACAGAGAAGGTTTATTTTGGCCGGTCCAGATGCTTGCTGTTCCTTGCGTGACAA
TCGGACCGCTTGCTATGTTTGTCATGGCTTGTACATTGTTCGGACGGTCTACGCTTTGATTGTAA
CTGATCGGGGCTTTGCCCTGGGCATTTGTCGAAAAGGGGTGGTAGGCAGGTGGACCCTGGGGATG
ACCACCGTGGGGTGGGTACGGAGGCTAATTTTGGTAGGGTGTTGCCTGCTTTGGATCGAAAAGGA
ACTAAGGAGGCTGGAACCGACGGATGCCAAACGCGATTACTAAGCTTGTGGCCAATGGACCGGTG
TCTGGGGCTTAGGTCACCACAAGCAACCAACAGGTACACCAGTAC


Right flanking sequence: Indices 12268 -- 12767
ACTGTTGTTATTGGCTGTTCGTCTCTAGCTACCCAATTTTGGTCACCTTTTATTTTAATTTTCAG
CAGTCCACGGTACTAAATGTCATTAGCTCGATGACCTAAAGCAACAATCAATGCAACCCGGAAAC
TAGCTCGCTAGACAAAAAAGCTATTAAAAAGCTATGCAACTCAGCTCTACTCTCTTCTTCAGCTC
TACCCATCAGCTCTACTCATCAGCTCTATCACTTCACAGCTCTACCTTTTCATCAGCTCTACCTT
TCATCAGCTCTCTTCATGCTAATATGCTATTGTCTATGCTAATGCTAATGCTAATTAATGTCTTA
GCCATGCTAAATAATGTCTTAGCCATGCTAAATAAAGTCTTAGCCATGCTAATCGTCTCTAACCC
TGCTTCAAAAGCTTCTGAAGAGCCCCCATCCCGGCCACCGCCTTCACCAAGTCGTCGTGGCCCAC
GTTCAACTTGATCACGCGGTTGCCGAGCTCGGCCAGCGTCTCCAT



Found at i:12472 original size:13 final size:13

Alignment explanation


    Indices: 12456--12490  Score: 61
    Period size: 13  Copynumber: 2.7  Consensus size: 13

      12446 ACTCTCTTCT

                         
      12456 TCAGCTCTACCCA
          1 TCAGCTCTACCCA

                      *  
      12469 TCAGCTCTACTCA
          1 TCAGCTCTACCCA

                     
      12482 TCAGCTCTA
          1 TCAGCTCTA

      12491 TCACTTCACA


Statistics
Matches: 21,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  13   21  1.00

ACGTcount: A:0.23, C:0.40, G:0.09, T:0.29


Consensus pattern (13 bp):   
TCAGCTCTACCCA

Left flanking sequence: Indices 11956 -- 12455
ATGGCTTGTACATTGTTCGGACGGTCTACGCTTTGATTGTAACTGATCGGGGCTTTGCCCTGGGC
ATTTGTCGAAAAGGGGTGGTAGGCAGGTGGACCCTGGGGATGACCACCGTGGGGTGGGTACGGAG
GCTAATTTTGGTAGGGTGTTGCCTGCTTTGGATCGAAAAGGAACTAAGGAGGCTGGAACCGACGG
ATGCCAAACGCGATTACTAAGCTTGTGGCCAATGGACCGGTGTCTGGGGCTTAGGTCACCACAAG
CAACCAACAGGTACACCAGTACGCAAACCAATAAGCAAACCAACAAGCAAACACTGTTGTTATTG
GCTGTTCGTCTCTAGCTACCCAATTTTGGTCACCTTTTATTTTAATTTTCAGCAGTCCACGGTAC
TAAATGTCATTAGCTCGATGACCTAAAGCAACAATCAATGCAACCCGGAAACTAGCTCGCTAGAC
AAAAAAGCTATTAAAAAGCTATGCAACTCAGCTCTACTCTCTTCT


Right flanking sequence: Indices 12491 -- 12990
TCACTTCACAGCTCTACCTTTTCATCAGCTCTACCTTTCATCAGCTCTCTTCATGCTAATATGCT
ATTGTCTATGCTAATGCTAATGCTAATTAATGTCTTAGCCATGCTAAATAATGTCTTAGCCATGC
TAAATAAAGTCTTAGCCATGCTAATCGTCTCTAACCCTGCTTCAAAAGCTTCTGAAGAGCCCCCA
TCCCGGCCACCGCCTTCACCAAGTCGTCGTGGCCCACGTTCAACTTGATCACGCGGTTGCCGAGC
TCGGCCAGCGTCTCCATCTTCGCCTTCTTCACGGGAGCCGCCAACAACACCACCGCCTGCGACTC
CAACGCCGCCACCACCTCCAAGAACTCGCTGCGTTTGAGCGTGGCCACCAAGTTCTCGCCGTAGT
CGGCTACAATGCCCCGGTAGAAGCTGTAGAACTCGTGCACAGACCCCAGGGCAAACCGCGAGAGC
ACACAGAGCACCAGCTTCTGGAGCATGTTGAGCAGCTCGAGCTTG



Found at i:12521 original size:17 final size:16

Alignment explanation


    Indices: 12438--12538  Score: 92
    Period size: 16  Copynumber: 6.5  Consensus size: 16

      12428 GCTATGCAAC

                             *
      12438 TCAGCTCTACTCTCTTCT
          1 TCAGCTCTAC-CT-TTCA

                            
      12456 TCAGCTCTACC---CA
          1 TCAGCTCTACCTTTCA

                            
      12469 TCAGCTCTA-C--TCA
          1 TCAGCTCTACCTTTCA

                              
      12482 TCAGCTCTATCAC-TTCA
          1 TCAGCTCTA-C-CTTTCA

                             
      12499 -CAGCTCTACCTTTTCA
          1 TCAGCTCTACC-TTTCA

                            
      12515 TCAGCTCTACCTTTCA
          1 TCAGCTCTACCTTTCA

                    
      12531 TCAGCTCT
          1 TCAGCTCT

      12539 CTTCATGCTA


Statistics
Matches: 74,  Mismatches: 1, Indels: 18
        0.80            0.01        0.19

Matches are distributed among these distances:
  12    1  0.01
  13   21  0.28
  14    1  0.01
  15    1  0.01
  16   26  0.35
  17   14  0.19
  18   10  0.14

ACGTcount: A:0.19, C:0.39, G:0.07, T:0.36


Consensus pattern (16 bp):   
TCAGCTCTACCTTTCA

Left flanking sequence: Indices 11938 -- 12437
CCGCTTGCTATGTTTGTCATGGCTTGTACATTGTTCGGACGGTCTACGCTTTGATTGTAACTGAT
CGGGGCTTTGCCCTGGGCATTTGTCGAAAAGGGGTGGTAGGCAGGTGGACCCTGGGGATGACCAC
CGTGGGGTGGGTACGGAGGCTAATTTTGGTAGGGTGTTGCCTGCTTTGGATCGAAAAGGAACTAA
GGAGGCTGGAACCGACGGATGCCAAACGCGATTACTAAGCTTGTGGCCAATGGACCGGTGTCTGG
GGCTTAGGTCACCACAAGCAACCAACAGGTACACCAGTACGCAAACCAATAAGCAAACCAACAAG
CAAACACTGTTGTTATTGGCTGTTCGTCTCTAGCTACCCAATTTTGGTCACCTTTTATTTTAATT
TTCAGCAGTCCACGGTACTAAATGTCATTAGCTCGATGACCTAAAGCAACAATCAATGCAACCCG
GAAACTAGCTCGCTAGACAAAAAAGCTATTAAAAAGCTATGCAAC


Right flanking sequence: Indices 12539 -- 13038
CTTCATGCTAATATGCTATTGTCTATGCTAATGCTAATGCTAATTAATGTCTTAGCCATGCTAAA
TAATGTCTTAGCCATGCTAAATAAAGTCTTAGCCATGCTAATCGTCTCTAACCCTGCTTCAAAAG
CTTCTGAAGAGCCCCCATCCCGGCCACCGCCTTCACCAAGTCGTCGTGGCCCACGTTCAACTTGA
TCACGCGGTTGCCGAGCTCGGCCAGCGTCTCCATCTTCGCCTTCTTCACGGGAGCCGCCAACAAC
ACCACCGCCTGCGACTCCAACGCCGCCACCACCTCCAAGAACTCGCTGCGTTTGAGCGTGGCCAC
CAAGTTCTCGCCGTAGTCGGCTACAATGCCCCGGTAGAAGCTGTAGAACTCGTGCACAGACCCCA
GGGCAAACCGCGAGAGCACACAGAGCACCAGCTTCTGGAGCATGTTGAGCAGCTCGAGCTTGGAG
GCAGTGGACACCCCAAACGCCAGCGCACACACCTTGGCCATGTGG



Found at i:12536 original size:33 final size:31

Alignment explanation


    Indices: 12438--12538  Score: 97
    Period size: 33  Copynumber: 3.3  Consensus size: 31

      12428 GCTATGCAAC

                             *               
      12438 TCAGCTCTACTCTCTTCTTCAGCTCTACC--CA
          1 TCAGCTCTAC-CT-TTCATCAGCTCTACCTTCA

                                             
      12469 TCAGCTCTA-C--TCATCAGCTCTATCACTTCA
          1 TCAGCTCTACCTTTCATCAGCTCTA-C-CTTCA

                                             
      12499 -CAGCTCTACCTTTTCATCAGCTCTACCTTTCA
          1 TCAGCTCTACC-TTTCATCAGCTCTACC-TTCA

                    
      12531 TCAGCTCT
          1 TCAGCTCT

      12539 CTTCATGCTA


Statistics
Matches: 59,  Mismatches: 1, Indels: 18
        0.76            0.01        0.23

Matches are distributed among these distances:
  26   11  0.19
  27    1  0.02
  28    1  0.02
  29    9  0.15
  30    3  0.05
  31   10  0.17
  32    5  0.08
  33   19  0.32

ACGTcount: A:0.19, C:0.39, G:0.07, T:0.36


Consensus pattern (31 bp):   
TCAGCTCTACCTTTCATCAGCTCTACCTTCA

Left flanking sequence: Indices 11938 -- 12437
CCGCTTGCTATGTTTGTCATGGCTTGTACATTGTTCGGACGGTCTACGCTTTGATTGTAACTGAT
CGGGGCTTTGCCCTGGGCATTTGTCGAAAAGGGGTGGTAGGCAGGTGGACCCTGGGGATGACCAC
CGTGGGGTGGGTACGGAGGCTAATTTTGGTAGGGTGTTGCCTGCTTTGGATCGAAAAGGAACTAA
GGAGGCTGGAACCGACGGATGCCAAACGCGATTACTAAGCTTGTGGCCAATGGACCGGTGTCTGG
GGCTTAGGTCACCACAAGCAACCAACAGGTACACCAGTACGCAAACCAATAAGCAAACCAACAAG
CAAACACTGTTGTTATTGGCTGTTCGTCTCTAGCTACCCAATTTTGGTCACCTTTTATTTTAATT
TTCAGCAGTCCACGGTACTAAATGTCATTAGCTCGATGACCTAAAGCAACAATCAATGCAACCCG
GAAACTAGCTCGCTAGACAAAAAAGCTATTAAAAAGCTATGCAAC


Right flanking sequence: Indices 12539 -- 13038
CTTCATGCTAATATGCTATTGTCTATGCTAATGCTAATGCTAATTAATGTCTTAGCCATGCTAAA
TAATGTCTTAGCCATGCTAAATAAAGTCTTAGCCATGCTAATCGTCTCTAACCCTGCTTCAAAAG
CTTCTGAAGAGCCCCCATCCCGGCCACCGCCTTCACCAAGTCGTCGTGGCCCACGTTCAACTTGA
TCACGCGGTTGCCGAGCTCGGCCAGCGTCTCCATCTTCGCCTTCTTCACGGGAGCCGCCAACAAC
ACCACCGCCTGCGACTCCAACGCCGCCACCACCTCCAAGAACTCGCTGCGTTTGAGCGTGGCCAC
CAAGTTCTCGCCGTAGTCGGCTACAATGCCCCGGTAGAAGCTGTAGAACTCGTGCACAGACCCCA
GGGCAAACCGCGAGAGCACACAGAGCACCAGCTTCTGGAGCATGTTGAGCAGCTCGAGCTTGGAG
GCAGTGGACACCCCAAACGCCAGCGCACACACCTTGGCCATGTGG



Found at i:12601 original size:21 final size:21

Alignment explanation


    Indices: 12575--12644  Score: 122
    Period size: 21  Copynumber: 3.3  Consensus size: 21

      12565 GCTAATGCTA

                   *             
      12575 ATGCTAATTAATGTCTTAGCC
          1 ATGCTAAATAATGTCTTAGCC

                                 
      12596 ATGCTAAATAATGTCTTAGCC
          1 ATGCTAAATAATGTCTTAGCC

                       *         
      12617 ATGCTAAATAAAGTCTTAGCC
          1 ATGCTAAATAATGTCTTAGCC

                   
      12638 ATGCTAA
          1 ATGCTAA

      12645 TCGTCTCTAA


Statistics
Matches: 47,  Mismatches: 2, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  21   47  1.00

ACGTcount: A:0.34, C:0.19, G:0.14, T:0.33


Consensus pattern (21 bp):   
ATGCTAAATAATGTCTTAGCC

Left flanking sequence: Indices 12075 -- 12574
TGGGTACGGAGGCTAATTTTGGTAGGGTGTTGCCTGCTTTGGATCGAAAAGGAACTAAGGAGGCT
GGAACCGACGGATGCCAAACGCGATTACTAAGCTTGTGGCCAATGGACCGGTGTCTGGGGCTTAG
GTCACCACAAGCAACCAACAGGTACACCAGTACGCAAACCAATAAGCAAACCAACAAGCAAACAC
TGTTGTTATTGGCTGTTCGTCTCTAGCTACCCAATTTTGGTCACCTTTTATTTTAATTTTCAGCA
GTCCACGGTACTAAATGTCATTAGCTCGATGACCTAAAGCAACAATCAATGCAACCCGGAAACTA
GCTCGCTAGACAAAAAAGCTATTAAAAAGCTATGCAACTCAGCTCTACTCTCTTCTTCAGCTCTA
CCCATCAGCTCTACTCATCAGCTCTATCACTTCACAGCTCTACCTTTTCATCAGCTCTACCTTTC
ATCAGCTCTCTTCATGCTAATATGCTATTGTCTATGCTAATGCTA


Right flanking sequence: Indices 12645 -- 13144
TCGTCTCTAACCCTGCTTCAAAAGCTTCTGAAGAGCCCCCATCCCGGCCACCGCCTTCACCAAGT
CGTCGTGGCCCACGTTCAACTTGATCACGCGGTTGCCGAGCTCGGCCAGCGTCTCCATCTTCGCC
TTCTTCACGGGAGCCGCCAACAACACCACCGCCTGCGACTCCAACGCCGCCACCACCTCCAAGAA
CTCGCTGCGTTTGAGCGTGGCCACCAAGTTCTCGCCGTAGTCGGCTACAATGCCCCGGTAGAAGC
TGTAGAACTCGTGCACAGACCCCAGGGCAAACCGCGAGAGCACACAGAGCACCAGCTTCTGGAGC
ATGTTGAGCAGCTCGAGCTTGGAGGCAGTGGACACCCCAAACGCCAGCGCACACACCTTGGCCAT
GTGGCTGATCAGCACCGGGCGCACCTCGGGCACGGCAAACGGGGTCGCCTGGGCCATCCACTCGC
GCTCCACCGCGTCCACCGCCTGGTAGCAGATGTCGAGGGCCTTGC



Found at i:14145 original size:9 final size:9

Alignment explanation


    Indices: 14133--14157  Score: 50
    Period size: 9  Copynumber: 2.8  Consensus size: 9

      14123 AGGAGACAGT

                     
      14133 GGAGGAGAC
          1 GGAGGAGAC

                     
      14142 GGAGGAGAC
          1 GGAGGAGAC

                   
      14151 GGAGGAG
          1 GGAGGAG

      14158 GAACCAGCCT


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   9   16  1.00

ACGTcount: A:0.32, C:0.08, G:0.60, T:0.00


Consensus pattern (9 bp):   
GGAGGAGAC

Left flanking sequence: Indices 13633 -- 14132
TGGCCCACGCTGTTCGGGAACACCTTGCGGATGATCTCCTGGAACACCAACTCGGGGCTCCGCAC
AATCATGCAGTTGAGCAGCACCACCCGCACCGGGGTCGCCCCGACGGCGATCTCCTCGGGGGCGG
CCCCGGAGCGGAGGTGTGCCAAGGTGTGGTGGAGCTGGGCGGTCTTGCCCGTGCCCGGGGGCCCC
AGGATGTAGAGGGTCAGCGAGGTGTTGGTGGCCACGGTGTTGGCGAGGAACTGGGTGAGCTCCTT
GGCCTCGGTTTCGCGCCCGGTCAAGTGGGGCTTCTGCGAGTCGTCGAGGAATCCCCGTTGGAAGA
GGGTCTTTGCCTCGGCGTAGATCGCGGGCACCGAGCCCTGGTGCCGGGTCGGGGTCGACGGCGGG
GTCGCGGGCGACGGGGTGAACCCGCGGTGCCGGGTCGGGGTGGGCACCCCCTTTTTGCGGGGCGT
GCGCGAGGGAGTGAGGAGGCCAGCAGGAGTGGAGGAGGAGACAGT


Right flanking sequence: Indices 14158 -- 14657
GAACCAGCCTCGAGATCAGCCTCGGGACCAGCCTCGAGGCCAATCGCCGAGCTTGGCGGCGACGG
CTCGTCCTGGGCGTCAGCCAACATCTCAGCCACCGCCCGTTTGCGCGAGGAACCGGCCTCGGGCG
TGAACGGGGTGTGTCTGGTGGCCTTGGTGGGGGTGGACACCGGGGTGGTGTTGGAGCGGTCTCTT
AACACACGAGTCATGGAGGAGGATGCTGAGGAGGGTGAGGAGGTATCGGTAAGGTGTTGAGCCAA
GTGAATGAATCAATGGTGGTGCCTGTGGTGGATCCCCGTGGGTGAGCTGGTGGTCTTTTTCCCAA
GAAATGGTAAAGAATGGGAAAACTAGCAAACGGATGCTTTATACCTCCTGCGGGATATTTTTTCG
CAGCCGACGCGTTTCATTTACGACGCGTCGCGTCCGGTGCTGGCTGAAAAACGCGGTGCAACGCG
GTGTGAGTAGGGGAGAAAACGCGGTGCGACTAGGGTTGGAGAGGA



Found at i:14177 original size:12 final size:12

Alignment explanation


    Indices: 14160--14195  Score: 54
    Period size: 12  Copynumber: 3.0  Consensus size: 12

      14150 CGGAGGAGGA

                        
      14160 ACCAGCCTCGAG
          1 ACCAGCCTCGAG

             *        * 
      14172 ATCAGCCTCGGG
          1 ACCAGCCTCGAG

                        
      14184 ACCAGCCTCGAG
          1 ACCAGCCTCGAG

      14196 GCCAATCGCC


Statistics
Matches: 20,  Mismatches: 4, Indels: 0
        0.83            0.17        0.00

Matches are distributed among these distances:
  12   20  1.00

ACGTcount: A:0.22, C:0.39, G:0.28, T:0.11


Consensus pattern (12 bp):   
ACCAGCCTCGAG

Left flanking sequence: Indices 13660 -- 14159
CGGATGATCTCCTGGAACACCAACTCGGGGCTCCGCACAATCATGCAGTTGAGCAGCACCACCCG
CACCGGGGTCGCCCCGACGGCGATCTCCTCGGGGGCGGCCCCGGAGCGGAGGTGTGCCAAGGTGT
GGTGGAGCTGGGCGGTCTTGCCCGTGCCCGGGGGCCCCAGGATGTAGAGGGTCAGCGAGGTGTTG
GTGGCCACGGTGTTGGCGAGGAACTGGGTGAGCTCCTTGGCCTCGGTTTCGCGCCCGGTCAAGTG
GGGCTTCTGCGAGTCGTCGAGGAATCCCCGTTGGAAGAGGGTCTTTGCCTCGGCGTAGATCGCGG
GCACCGAGCCCTGGTGCCGGGTCGGGGTCGACGGCGGGGTCGCGGGCGACGGGGTGAACCCGCGG
TGCCGGGTCGGGGTGGGCACCCCCTTTTTGCGGGGCGTGCGCGAGGGAGTGAGGAGGCCAGCAGG
AGTGGAGGAGGAGACAGTGGAGGAGACGGAGGAGACGGAGGAGGA


Right flanking sequence: Indices 14196 -- 14695
GCCAATCGCCGAGCTTGGCGGCGACGGCTCGTCCTGGGCGTCAGCCAACATCTCAGCCACCGCCC
GTTTGCGCGAGGAACCGGCCTCGGGCGTGAACGGGGTGTGTCTGGTGGCCTTGGTGGGGGTGGAC
ACCGGGGTGGTGTTGGAGCGGTCTCTTAACACACGAGTCATGGAGGAGGATGCTGAGGAGGGTGA
GGAGGTATCGGTAAGGTGTTGAGCCAAGTGAATGAATCAATGGTGGTGCCTGTGGTGGATCCCCG
TGGGTGAGCTGGTGGTCTTTTTCCCAAGAAATGGTAAAGAATGGGAAAACTAGCAAACGGATGCT
TTATACCTCCTGCGGGATATTTTTTCGCAGCCGACGCGTTTCATTTACGACGCGTCGCGTCCGGT
GCTGGCTGAAAAACGCGGTGCAACGCGGTGTGAGTAGGGGAGAAAACGCGGTGCGACTAGGGTTG
GAGAGGAAGGAGGAGGAGGAAAGGGAGAGGTGGTGGACAGTGCAT



Found at i:14938 original size:8 final size:9

Alignment explanation


    Indices: 14899--14939  Score: 50
    Period size: 8  Copynumber: 4.7  Consensus size: 9

      14889 TTCGTATGTA

                     *
      14899 CCTATCTAAA
          1 CCTAT-TAAG

                     
      14909 CCTATTAAG
          1 CCTATTAAG

                     
      14918 CCTATT-AG
          1 CCTATTAAG

                     
      14926 CCTATTAAG
          1 CCTATTAAG

                  
      14935 -CTATT
          1 CCTATT

      14940 GTCTGAGCTT


Statistics
Matches: 29,  Mismatches: 1, Indels: 4
        0.85            0.03        0.12

Matches are distributed among these distances:
   8   13  0.45
   9   11  0.38
  10    5  0.17

ACGTcount: A:0.32, C:0.24, G:0.07, T:0.37


Consensus pattern (9 bp):   
CCTATTAAG

Left flanking sequence: Indices 14399 -- 14898
CGGTAAGGTGTTGAGCCAAGTGAATGAATCAATGGTGGTGCCTGTGGTGGATCCCCGTGGGTGAG
CTGGTGGTCTTTTTCCCAAGAAATGGTAAAGAATGGGAAAACTAGCAAACGGATGCTTTATACCT
CCTGCGGGATATTTTTTCGCAGCCGACGCGTTTCATTTACGACGCGTCGCGTCCGGTGCTGGCTG
AAAAACGCGGTGCAACGCGGTGTGAGTAGGGGAGAAAACGCGGTGCGACTAGGGTTGGAGAGGAA
GGAGGAGGAGGAAAGGGAGAGGTGGTGGACAGTGCATAAAGTCAAACGGTGTAGTGGAGCAAACA
GCACAGGTAGGCACATAGTGGGGTGTAGTATTATGGGATGGGTGAGATGGATAGATGATAGATTA
GGTGGTTTTCAAGGATGCGATGGTAGGATTGATGATCCCATTTTATGATCCACGCACCCACTTTT
CTCGCTGGGTCTGACATTATCGATTTCTCCGTCAATTCGTATGTA


Right flanking sequence: Indices 14940 -- 15439
GTCTGAGCTTCTAGCATCTTTCATCGTACGAGCTCCTAGGACCAGCCTAAAACCCGCTTCAAACC
GAGACACGGACTCCTTACTCAAAACTAAAAGCCAGCCTGGGTCTTTTCACTGTAGCTCTTTAACC
CACCTTTCTATTCCACCCATCTCTCTCCTCTCTCTTCCCTCACTCTCCCTCGTTAATCTCAAACT
GCTTCAACACCTTGGTCAACACCGGGTTCTTGCGGGCCACCATGTACAAGTCCGCGGGCTCCACC
ACCAGGCGGCCCGCGTGCGTGGCAAAAAGCTCCAAGTCCGCCCCGGTGTTGACGATCTGGTTATA
TACGAGCTCCACGAGGGCCGCAGTGAACGACGGGGTGGCGATGACTGGGGCGACGTCGGAGCCCA
TGGTGGCCATCTTGCGCTCGACCATCTGTGCCACCATGAGGTACACCGCCAGCTTGAGTTGTTCG
TTGCTCATTTTGGGTGGTGTGGGGCTGGGTGTGGCTGGGTGGGTT



Found at i:15876 original size:12 final size:11

Alignment explanation


    Indices: 15832--15867  Score: 63
    Period size: 11  Copynumber: 3.2  Consensus size: 11

      15822 TAGAGACTGT

                       
      15832 TTCAGAGGCTG
          1 TTCAGAGGCTG

                       
      15843 TTCAGAGGCTG
          1 TTCAGAGGCTG

                        
      15854 TTCTAGAGGCTG
          1 TTC-AGAGGCTG

              
      15866 TT
          1 TT

      15868 TCAAAGGCTT


Statistics
Matches: 24,  Mismatches: 0, Indels: 1
        0.96            0.00        0.04

Matches are distributed among these distances:
  11   14  0.58
  12   10  0.42

ACGTcount: A:0.17, C:0.17, G:0.33, T:0.33


Consensus pattern (11 bp):   
TTCAGAGGCTG

Left flanking sequence: Indices 15332 -- 15831
GTGGCCATCTTGCGCTCGACCATCTGTGCCACCATGAGGTACACCGCCAGCTTGAGTTGTTCGTT
GCTCATTTTGGGTGGTGTGGGGCTGGGTGTGGCTGGGTGGGTTGATGGGTAGGGATGGTTGGTGG
TGGACACGGGCTCGCAACGAAGAGACGTGTAGCGGGTAGACTCTACGGGCTCACAATGGAGAAGG
CAGCAGGGCACGTAACGCAGTTTTGGTTGACGGTTGGGGCAGGGCACCCAACCGGGGATCTTGTG
ATAGGGGCAGCCTCCGATGATCTGGAGAGGGGCAGCGGCCGAGACGGAGGCGGGGAGCCACGCGA
TGGCACAAGGAGCGAGAGGAGGCTGGTAGTGGTGGTGGTGGTGGTCGGTGGCTATTGAGTACAAA
TTGTTGTCGCACTTCAGGTTGGGAGGGAGAGACGAGGCAGTAGGGGAGAAGGTAGACGCTAGTGG
TGGGGTATAGCATGGGTTTTAGCTCTGAGTAGAGTTAGAGACTGT


Right flanking sequence: Indices 15868 -- 16367
TCAAAGGCTTGTGGGCTTTATGAAATCTCTAATCCTCGTTCCTACTGAGGCCTTAGTAAGCCCAT
GGTAACCCTTTGAGACTCCATAAAGTACCAATAACACTCCTCAATCTACACTTTCTTGGGCAAAC
CGTACCAATTACACCTCCATGAGCATAAAAACACCCCCACCAACCCCCTCTACCACGCCACCCGA
TCCCAGCCCCATCGTCACCGATTGCCTCGGCAACCTCCGGGCGGCAACGGCAAACAGCAAGAACC
GGAGCCGACAGCCAGAGAAGAGCAATTGGCCACGGCCAGCGCACCAGAACACCCCAAATAGCACT
CTTAGCATTTGCCACAACCCAGTGCACCCCATTTAAGCTTTGAACTACGCTAACCTCTACCCAAA
TTTTTCAACCGCCATGGCCCAATCGGGTAAATTACATGAGTCCATCGCACTAAAGGAGGTCTCCG
CGTTCGCCGGTGGCTCGGCACCACCCAGGCACACCTCCCCACACC



Found at i:16365 original size:10 final size:10

Alignment explanation


    Indices: 16352--16387  Score: 63
    Period size: 10  Copynumber: 3.6  Consensus size: 10

      16342 ACCACCCAGG

                      
      16352 CACACCTCCC
          1 CACACCTCCC

                      
      16362 CACACCTCCC
          1 CACACCTCCC

                    * 
      16372 CACACCTCTC
          1 CACACCTCCC

                  
      16382 CACACC
          1 CACACC

      16388 CCCACCACCC


Statistics
Matches: 25,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  10   25  1.00

ACGTcount: A:0.22, C:0.67, G:0.00, T:0.11


Consensus pattern (10 bp):   
CACACCTCCC

Left flanking sequence: Indices 15852 -- 16351
TGTTCTAGAGGCTGTTTCAAAGGCTTGTGGGCTTTATGAAATCTCTAATCCTCGTTCCTACTGAG
GCCTTAGTAAGCCCATGGTAACCCTTTGAGACTCCATAAAGTACCAATAACACTCCTCAATCTAC
ACTTTCTTGGGCAAACCGTACCAATTACACCTCCATGAGCATAAAAACACCCCCACCAACCCCCT
CTACCACGCCACCCGATCCCAGCCCCATCGTCACCGATTGCCTCGGCAACCTCCGGGCGGCAACG
GCAAACAGCAAGAACCGGAGCCGACAGCCAGAGAAGAGCAATTGGCCACGGCCAGCGCACCAGAA
CACCCCAAATAGCACTCTTAGCATTTGCCACAACCCAGTGCACCCCATTTAAGCTTTGAACTACG
CTAACCTCTACCCAAATTTTTCAACCGCCATGGCCCAATCGGGTAAATTACATGAGTCCATCGCA
CTAAAGGAGGTCTCCGCGTTCGCCGGTGGCTCGGCACCACCCAGG


Right flanking sequence: Indices 16388 -- 16887
CCCACCACCCGCCACCGTCCGCCATGGACGTTCCCGATCTTCCGTCGGCTCCACCTGCCTCCATT
GCTCTCACCCAACAATCGCCACCGGCCACCGCCATTGTCTACCCCACTGGATCTAGTCTGACCCC
TACCCTTCCCCCATAGCCACTCTACGCCCTCCTTCCTTCTACACCTCATCCTGCCCGACTTCTCC
CTAACCCCTCCTCCGTGGTGCCGCGCCAATTGCTTTTTTCGGACCATACCGTTGATCGGTCTCCA
CACGCAGCACCGACGCACCCACGAGCACTGCACCCTCACCAGCACCGCACACCTTCTGCACCGAG
TCCGCACCACTCGCACGAGCATCCACGCCAGTCCACCAGGCCACCAATCCAGTGAGTGAAAGCCG
AGCGACAGCCGAGTGTAGCCGAGACCCCTAGCCGAGAACACAAGAGCTGCGCTGTGATCCACGCA
ACCCCGGTTACCGTCCTATTATCTGGTCTACTGGTATACCGCGTT



Found at i:16942 original size:9 final size:9

Alignment explanation


    Indices: 16928--16985  Score: 89
    Period size: 9  Copynumber: 6.4  Consensus size: 9

      16918 TGCACCAGTG

                     
      16928 CAGTGCAAC
          1 CAGTGCAAC

                     
      16937 CAGTGCAAC
          1 CAGTGCAAC

                     
      16946 CAGTGCAAC
          1 CAGTGCAAC

                     
      16955 CAGTGCAAC
          1 CAGTGCAAC

            *        
      16964 GAGTGCAAC
          1 CAGTGCAAC

              *     *
      16973 CATTGCAAT
          1 CAGTGCAAC

                
      16982 CAGT
          1 CAGT

      16986 CAGTGCACCA


Statistics
Matches: 44,  Mismatches: 5, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
   9   44  1.00

ACGTcount: A:0.33, C:0.29, G:0.22, T:0.16


Consensus pattern (9 bp):   
CAGTGCAAC

Left flanking sequence: Indices 16428 -- 16927
TCCGTCGGCTCCACCTGCCTCCATTGCTCTCACCCAACAATCGCCACCGGCCACCGCCATTGTCT
ACCCCACTGGATCTAGTCTGACCCCTACCCTTCCCCCATAGCCACTCTACGCCCTCCTTCCTTCT
ACACCTCATCCTGCCCGACTTCTCCCTAACCCCTCCTCCGTGGTGCCGCGCCAATTGCTTTTTTC
GGACCATACCGTTGATCGGTCTCCACACGCAGCACCGACGCACCCACGAGCACTGCACCCTCACC
AGCACCGCACACCTTCTGCACCGAGTCCGCACCACTCGCACGAGCATCCACGCCAGTCCACCAGG
CCACCAATCCAGTGAGTGAAAGCCGAGCGACAGCCGAGTGTAGCCGAGACCCCTAGCCGAGAACA
CAAGAGCTGCGCTGTGATCCACGCAACCCCGGTTACCGTCCTATTATCTGGTCTACTGGTATACC
GCGTTCATTCCTTGGTGCCCTCAAGTGATAAAGTGTGCACCAGTG


Right flanking sequence: Indices 16986 -- 17485
CAGTGCACCAGTACAACCATTGCAATCAGTCAGTGCACCAGTACAACCAGTACAATTGAACAGTT
CTACAAAGAGCACCCTTGATTGTTCGTCCCAAACACGAACTATAACTTAGTGAACCGGGTCACAT
ATCCACTTGGTTCCTCACTTGGTTGTTAGACTTCCACCTGGACATCCACCTGGTAATATCCTATA
TCCACCTGGTGACACCCACCAGAACATCCATACACCTGGTTTTTCACCTGGTTTTTCACCTGGTT
TTTCACCTGGTTTCAACCACCTGGTAATACCACCAACCCATACTACACCTCCCCCACTCCCCCTC
ATGAGCAAATCACGCGTGGGGCTCTCCTACCTGCTCGGGGACCTGGACGACCTCGGCAACCATAT
CCTCCCCGTCAACTGTCTCACGGTGGCCGGGCACTCGCTCGTCACCGGCGGCCGTGACGGGTGCG
TCAAGCGGTGGACCATGGGCGCACCCGGTGCCGCACACTCCGGCA



Found at i:17005 original size:30 final size:31

Alignment explanation


    Indices: 16923--17034  Score: 137
    Period size: 30  Copynumber: 3.8  Consensus size: 31

      16913 AAGTGTGCAC

                              *      *      
      16923 CAGTGCAGTGCAACCAGTGCAACCAGTGCAA-
          1 CAGT-CAGTGCAACCAGTACAACCATTGCAAT

                         *   *             
      16954 C---CAGTGCAACGAGTGCAACCATTGCAAT
          1 CAGTCAGTGCAACCAGTACAACCATTGCAAT

                                           
      16982 CAGTCAGTGC-ACCAGTACAACCATTGCAAT
          1 CAGTCAGTGCAACCAGTACAACCATTGCAAT

                                    
      17012 CAGTCAGTGC-ACCAGTACAACCA
          1 CAGTCAGTGCAACCAGTACAACCA

      17035 GTACAATTGA


Statistics
Matches: 73,  Mismatches: 4, Indels: 9
        0.85            0.05        0.10

Matches are distributed among these distances:
  27   24  0.33
  28    1  0.01
  30   41  0.56
  31    7  0.10

ACGTcount: A:0.33, C:0.30, G:0.21, T:0.16


Consensus pattern (31 bp):   
CAGTCAGTGCAACCAGTACAACCATTGCAAT

Left flanking sequence: Indices 16423 -- 16922
GATCTTCCGTCGGCTCCACCTGCCTCCATTGCTCTCACCCAACAATCGCCACCGGCCACCGCCAT
TGTCTACCCCACTGGATCTAGTCTGACCCCTACCCTTCCCCCATAGCCACTCTACGCCCTCCTTC
CTTCTACACCTCATCCTGCCCGACTTCTCCCTAACCCCTCCTCCGTGGTGCCGCGCCAATTGCTT
TTTTCGGACCATACCGTTGATCGGTCTCCACACGCAGCACCGACGCACCCACGAGCACTGCACCC
TCACCAGCACCGCACACCTTCTGCACCGAGTCCGCACCACTCGCACGAGCATCCACGCCAGTCCA
CCAGGCCACCAATCCAGTGAGTGAAAGCCGAGCGACAGCCGAGTGTAGCCGAGACCCCTAGCCGA
GAACACAAGAGCTGCGCTGTGATCCACGCAACCCCGGTTACCGTCCTATTATCTGGTCTACTGGT
ATACCGCGTTCATTCCTTGGTGCCCTCAAGTGATAAAGTGTGCAC


Right flanking sequence: Indices 17035 -- 17534
GTACAATTGAACAGTTCTACAAAGAGCACCCTTGATTGTTCGTCCCAAACACGAACTATAACTTA
GTGAACCGGGTCACATATCCACTTGGTTCCTCACTTGGTTGTTAGACTTCCACCTGGACATCCAC
CTGGTAATATCCTATATCCACCTGGTGACACCCACCAGAACATCCATACACCTGGTTTTTCACCT
GGTTTTTCACCTGGTTTTTCACCTGGTTTCAACCACCTGGTAATACCACCAACCCATACTACACC
TCCCCCACTCCCCCTCATGAGCAAATCACGCGTGGGGCTCTCCTACCTGCTCGGGGACCTGGACG
ACCTCGGCAACCATATCCTCCCCGTCAACTGTCTCACGGTGGCCGGGCACTCGCTCGTCACCGGC
GGCCGTGACGGGTGCGTCAAGCGGTGGACCATGGGCGCACCCGGTGCCGCACACTCCGGCACCGC
GGTGCCTCCGCCGCCGCTCACGCCCTACGACGACGACTTGGACAC



Found at i:17230 original size:12 final size:12

Alignment explanation


    Indices: 17213--17258  Score: 92
    Period size: 12  Copynumber: 3.8  Consensus size: 12

      17203 AACATCCATA

                        
      17213 CACCTGGTTTTT
          1 CACCTGGTTTTT

                        
      17225 CACCTGGTTTTT
          1 CACCTGGTTTTT

                        
      17237 CACCTGGTTTTT
          1 CACCTGGTTTTT

                      
      17249 CACCTGGTTT
          1 CACCTGGTTT

      17259 CAACCACCTG


Statistics
Matches: 34,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   34  1.00

ACGTcount: A:0.09, C:0.26, G:0.17, T:0.48


Consensus pattern (12 bp):   
CACCTGGTTTTT

Left flanking sequence: Indices 16713 -- 17212
TCCGCACCACTCGCACGAGCATCCACGCCAGTCCACCAGGCCACCAATCCAGTGAGTGAAAGCCG
AGCGACAGCCGAGTGTAGCCGAGACCCCTAGCCGAGAACACAAGAGCTGCGCTGTGATCCACGCA
ACCCCGGTTACCGTCCTATTATCTGGTCTACTGGTATACCGCGTTCATTCCTTGGTGCCCTCAAG
TGATAAAGTGTGCACCAGTGCAGTGCAACCAGTGCAACCAGTGCAACCAGTGCAACGAGTGCAAC
CATTGCAATCAGTCAGTGCACCAGTACAACCATTGCAATCAGTCAGTGCACCAGTACAACCAGTA
CAATTGAACAGTTCTACAAAGAGCACCCTTGATTGTTCGTCCCAAACACGAACTATAACTTAGTG
AACCGGGTCACATATCCACTTGGTTCCTCACTTGGTTGTTAGACTTCCACCTGGACATCCACCTG
GTAATATCCTATATCCACCTGGTGACACCCACCAGAACATCCATA


Right flanking sequence: Indices 17259 -- 17758
CAACCACCTGGTAATACCACCAACCCATACTACACCTCCCCCACTCCCCCTCATGAGCAAATCAC
GCGTGGGGCTCTCCTACCTGCTCGGGGACCTGGACGACCTCGGCAACCATATCCTCCCCGTCAAC
TGTCTCACGGTGGCCGGGCACTCGCTCGTCACCGGCGGCCGTGACGGGTGCGTCAAGCGGTGGAC
CATGGGCGCACCCGGTGCCGCACACTCCGGCACCGCGGTGCCTCCGCCGCCGCTCACGCCCTACG
ACGACGACTTGGACACCGAGCTCTTGCGGCTCGAACAGGCGGTCCTGGGCCGCCCGCTCCCCCAC
GGACGCTGGCAACCGCCCGGGCTCACCGTCGAGCTGCTGTACCCCGTCCACTTCGACTGGGTCAA
CGATGTGCACGCGGTGTCCGACCAGGCCATTGTGCTGTGCCTGCTGGACCTTTCCATGAAGATCG
TGGGGGCGCTGGGAGCCGTCCACAAGTTCGCCAACGCCCACACCG



Found at i:23050 original size:16 final size:16

Alignment explanation


    Indices: 23011--23051  Score: 57
    Period size: 16  Copynumber: 2.6  Consensus size: 16

      23001 AAAAGATTGA

                            
      23011 AGTCCTCGTCACCCTG
          1 AGTCCTCGTCACCCTG

                       *     
      23027 AG-CTCTCGTCCCCCTG
          1 AGTC-CTCGTCACCCTG

                     
      23043 AGTCCTCGT
          1 AGTCCTCGT

      23052 TTCTTTGAGC


Statistics
Matches: 22,  Mismatches: 1, Indels: 4
        0.81            0.04        0.15

Matches are distributed among these distances:
  15    1  0.05
  16   20  0.91
  17    1  0.05

ACGTcount: A:0.10, C:0.44, G:0.20, T:0.27


Consensus pattern (16 bp):   
AGTCCTCGTCACCCTG

Left flanking sequence: Indices 22511 -- 23010
AGTACTGCTCCACCACGGCCAGTAGCCACGAGATCTACCTCGGGTGGTCGGTGCTTTTCACGTTT
TTCGTTACCATGATGTTTGGTGCTCTCTTTGCCTACACCCCCGAGGTGTTCTACTCGAAGATTCG
CGGGACCGGAGTGGGCCTAGCACTGATCTTCTTCCGCATCATGGGGGTGATTCTGCCGGTGGTGG
CCATCTACGCCGACTTTGAGACGTGGCGGCCGGTGTACATTTGTGGAGCGATGTTTCTTGGGGCC
GGAGTACTGGTGCTCTTGTTTCCATTCCAGCCCCACAACCAACACGCTATTTAGTGCAGGGTCCA
TTAACAACTGGATGGTTTGAAGCCTTCTGAGGTATGACAAAACCCACCTTCTGGGTTATGACACC
ATCAATAGCCAACCAATAATCCATAGCCCACTCATACGGGTAGATCGTAAAATGTGGTCAGTAAT
GTAAATTTTCCACTCTAGCTAGTACCATGTAGAACAAAAGATTGA


Right flanking sequence: Indices 23052 -- 23551
TTCTTTGAGCCATTGTTACCCAAGCCCTCATCACCTGAGTCCTCGTCACCCCAACAACCTGTCTT
CTCCACCTTCCCCTATCTTTGCCGCCAGGGGAGCCACAAGCGAGACAAACGCAAACACCCACGGA
GGACAAAACCGTCCAAAAATAACACCCCAATTGCACACCAGCTACCAAAACCACGCCAATCGCAC
CTTTTTCTGCTCCCCCCTTGGCCATTTCCTCCAACACGGCCACCCCTTTCTGCAACCACCTGCCT
AATCCGGCCCGGTTACGAGCCCACAACCACAAGCCCACCACGAGCCCTGTGCCGCAACCACCCAT
AACGATCCAACCCACCCCTCCACCACCATGACTTTCGAAACTACTGCTGAGATCGCTCAATTCGG
TGGCACGCTCCACAAATTGACCCACGAGTCCCGCGAAACGGGCACCAAGATGGACGTCAACGTGT
TCGTCCCGGGCTCGGCTACCTCCGCCGTCCCGGTGCTCCTCTACC



Found at i:24293 original size:21 final size:21

Alignment explanation


    Indices: 24268--24379  Score: 120
    Period size: 21  Copynumber: 5.4  Consensus size: 21

      24258 CAAGTAGAGT

                               * 
      24268 AAATGAAGAAAGAGTAGGTGG
          1 AAATGAAGAAAGAGTAGGTAG

                       *         
      24289 AAATGAAGAAACAGTAGGTAG
          1 AAATGAAGAAAGAGTAGGTAG

                 *   *          * 
      24310 AAATGGAGCTAAGA-T-GGTGG
          1 AAATGAAG-AAAGAGTAGGTAG

            * *  *      *        
      24330 GATTGTAGAAAGGGTAGGTAG
          1 AAATGAAGAAAGAGTAGGTAG

                                 
      24351 AAATGAAGAAAGAGTAGGTAG
          1 AAATGAAGAAAGAGTAGGTAG

                    
      24372 AAATGAAG
          1 AAATGAAG

      24380 CTAGGATGGT


Statistics
Matches: 72,  Mismatches: 16, Indels: 6
        0.77            0.17        0.06

Matches are distributed among these distances:
  19    3  0.04
  20   10  0.14
  21   56  0.78
  22    3  0.04

ACGTcount: A:0.46, C:0.02, G:0.36, T:0.17


Consensus pattern (21 bp):   
AAATGAAGAAAGAGTAGGTAG

Left flanking sequence: Indices 23768 -- 24267
ATGTGCACAAGGAGCTCCAGGAGGAGCTCAAGAAGCACTTTTCCCAGTTGGACTTTGGCAACATC
GCCATCACGGGCCACTCCATGGGTGGCTACGGGGCCCTTGCGGGCTTCTTGAAGAACCCTGGCCA
CTACAAGTCGGTGAGTGCGTTTGCTCCCATCGCCAACCCGAGCCAGTGTCCCTGGGGAGAGAAGT
GCTTTGGCAACTACTTGGGCAGCGACAAGAAGAAGTGGGAGGAGTACGACCCCACGGTGCTTGTG
GCGTCGTACCTGGGTGACAAGCCTGCGATCTTGATCCACCAGGGGAGCAAGGACGGGTTCTACTG
CAACGAGCCCAAGCAGTTGAAGCCCGAGAACTTCAAGCTGGCGGCGGAGAAGGCCGGGTTTGAGG
TGTCGTTGAACGTGGTGGACGGGTACGACCACAGCTACTTTTTTATTTCGTCGTTTGTCGAGGAC
CACGCCAAGCACCATGCCAAGTACTTGGGGTTGAGCAAGTAGAGT


Right flanking sequence: Indices 24380 -- 24879
CTAGGATGGTGGATTGTAGAAAGGGTGGTTGACTTAGACGGGACTGGTCAAAGTAACACGAAGTA
AGGCGGGGTTGTAGTGAAGGCATGGTCAGAGCTGGATGATCCATGGCCCGTCACCACAGTAGCAA
TCACCACCGTAGCGATCACCACAGTAGCGAACTTTACAGAAACTCCCTCCAGACGACTTGAATGA
AGAGTCTATAACCACCGTGATGGATATAGACGAGACCCGTAAACGTGTCGTTACACACAAAATAT
GCGATGGTCAAATTAGGGGCGACCAATCCAAAATCAATGAAGTTTGCCTAAAGCTTTTCATACCC
AAATACTTGTTCTCCCAACTCACACACACGTTTTCAACCGTCCTTCTCATACCCACCCCGACGGT
TCCATTAACCTCACGTCTTGGAGAACTTCGTAACAACAGGCAGCCCAGTATTCGAGTTGACTGCT
ATAGCCGTAACATTCAGAAATCTGCTTGTGGAGCTTGATCAAACT



Found at i:24371 original size:62 final size:61

Alignment explanation


    Indices: 24274--24405  Score: 210
    Period size: 62  Copynumber: 2.1  Consensus size: 61

      24264 GAGTAAATGA

                  *      *                           *                    
      24274 AGAAAGAGTAGGTGGAAATGAAGAAACAGTAGGTAGAAATGGAGCTAAGATGGTGGGATTGT
          1 AGAAAGGGTAGGTAGAAATGAAGAAACAGTAGGTAGAAATGAAGCTAAGATGGT-GGATTGT

                                      *                    *             
      24336 AGAAAGGGTAGGTAGAAATGAAGAAAGAGTAGGTAGAAATGAAGCTAGGATGGTGGATTGT
          1 AGAAAGGGTAGGTAGAAATGAAGAAACAGTAGGTAGAAATGAAGCTAAGATGGTGGATTGT

                     
      24397 AGAAAGGGT
          1 AGAAAGGGT

      24406 GGTTGACTTA


Statistics
Matches: 65,  Mismatches: 5, Indels: 1
        0.92            0.07        0.01

Matches are distributed among these distances:
  61   16  0.25
  62   49  0.75

ACGTcount: A:0.41, C:0.02, G:0.38, T:0.19


Consensus pattern (61 bp):   
AGAAAGGGTAGGTAGAAATGAAGAAACAGTAGGTAGAAATGAAGCTAAGATGGTGGATTGT

Left flanking sequence: Indices 23774 -- 24273
ACAAGGAGCTCCAGGAGGAGCTCAAGAAGCACTTTTCCCAGTTGGACTTTGGCAACATCGCCATC
ACGGGCCACTCCATGGGTGGCTACGGGGCCCTTGCGGGCTTCTTGAAGAACCCTGGCCACTACAA
GTCGGTGAGTGCGTTTGCTCCCATCGCCAACCCGAGCCAGTGTCCCTGGGGAGAGAAGTGCTTTG
GCAACTACTTGGGCAGCGACAAGAAGAAGTGGGAGGAGTACGACCCCACGGTGCTTGTGGCGTCG
TACCTGGGTGACAAGCCTGCGATCTTGATCCACCAGGGGAGCAAGGACGGGTTCTACTGCAACGA
GCCCAAGCAGTTGAAGCCCGAGAACTTCAAGCTGGCGGCGGAGAAGGCCGGGTTTGAGGTGTCGT
TGAACGTGGTGGACGGGTACGACCACAGCTACTTTTTTATTTCGTCGTTTGTCGAGGACCACGCC
AAGCACCATGCCAAGTACTTGGGGTTGAGCAAGTAGAGTAAATGA


Right flanking sequence: Indices 24406 -- 24905
GGTTGACTTAGACGGGACTGGTCAAAGTAACACGAAGTAAGGCGGGGTTGTAGTGAAGGCATGGT
CAGAGCTGGATGATCCATGGCCCGTCACCACAGTAGCAATCACCACCGTAGCGATCACCACAGTA
GCGAACTTTACAGAAACTCCCTCCAGACGACTTGAATGAAGAGTCTATAACCACCGTGATGGATA
TAGACGAGACCCGTAAACGTGTCGTTACACACAAAATATGCGATGGTCAAATTAGGGGCGACCAA
TCCAAAATCAATGAAGTTTGCCTAAAGCTTTTCATACCCAAATACTTGTTCTCCCAACTCACACA
CACGTTTTCAACCGTCCTTCTCATACCCACCCCGACGGTTCCATTAACCTCACGTCTTGGAGAAC
TTCGTAACAACAGGCAGCCCAGTATTCGAGTTGACTGCTATAGCCGTAACATTCAGAAATCTGCT
TGTGGAGCTTGATCAAACTTTTCCAGTCATCAAGGCCAACCTCGA



Found at i:24538 original size:15 final size:15

Alignment explanation


    Indices: 24495--24539  Score: 72
    Period size: 15  Copynumber: 3.0  Consensus size: 15

      24485 CCATGGCCCG

                         * 
      24495 TCACCACAGTAGCAA
          1 TCACCACAGTAGCGA

                   *       
      24510 TCACCACCGTAGCGA
          1 TCACCACAGTAGCGA

                           
      24525 TCACCACAGTAGCGA
          1 TCACCACAGTAGCGA

      24540 ACTTTACAGA


Statistics
Matches: 27,  Mismatches: 3, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  15   27  1.00

ACGTcount: A:0.33, C:0.36, G:0.18, T:0.13


Consensus pattern (15 bp):   
TCACCACAGTAGCGA

Left flanking sequence: Indices 23995 -- 24494
AAGTGGGAGGAGTACGACCCCACGGTGCTTGTGGCGTCGTACCTGGGTGACAAGCCTGCGATCTT
GATCCACCAGGGGAGCAAGGACGGGTTCTACTGCAACGAGCCCAAGCAGTTGAAGCCCGAGAACT
TCAAGCTGGCGGCGGAGAAGGCCGGGTTTGAGGTGTCGTTGAACGTGGTGGACGGGTACGACCAC
AGCTACTTTTTTATTTCGTCGTTTGTCGAGGACCACGCCAAGCACCATGCCAAGTACTTGGGGTT
GAGCAAGTAGAGTAAATGAAGAAAGAGTAGGTGGAAATGAAGAAACAGTAGGTAGAAATGGAGCT
AAGATGGTGGGATTGTAGAAAGGGTAGGTAGAAATGAAGAAAGAGTAGGTAGAAATGAAGCTAGG
ATGGTGGATTGTAGAAAGGGTGGTTGACTTAGACGGGACTGGTCAAAGTAACACGAAGTAAGGCG
GGGTTGTAGTGAAGGCATGGTCAGAGCTGGATGATCCATGGCCCG


Right flanking sequence: Indices 24540 -- 25039
ACTTTACAGAAACTCCCTCCAGACGACTTGAATGAAGAGTCTATAACCACCGTGATGGATATAGA
CGAGACCCGTAAACGTGTCGTTACACACAAAATATGCGATGGTCAAATTAGGGGCGACCAATCCA
AAATCAATGAAGTTTGCCTAAAGCTTTTCATACCCAAATACTTGTTCTCCCAACTCACACACACG
TTTTCAACCGTCCTTCTCATACCCACCCCGACGGTTCCATTAACCTCACGTCTTGGAGAACTTCG
TAACAACAGGCAGCCCAGTATTCGAGTTGACTGCTATAGCCGTAACATTCAGAAATCTGCTTGTG
GAGCTTGATCAAACTTTTCCAGTCATCAAGGCCAACCTCGAGGACGACGCTTTCGTGGACTACAC
GTTACAAATGAAGAAAGAATTTGAAGGTGGGCCAGATCGATCTCGACATGACGCATTCCATTTTG
AACAAGGCGAAAAGATTGACGAAGTTGAAAGTGAATACCAATGGA



Found at i:32940 original size:12 final size:12

Alignment explanation


    Indices: 32923--32952  Score: 60
    Period size: 12  Copynumber: 2.5  Consensus size: 12

      32913 GGCAATGGCA

                        
      32923 CTGCAACAAGCC
          1 CTGCAACAAGCC

                        
      32935 CTGCAACAAGCC
          1 CTGCAACAAGCC

                  
      32947 CTGCAA
          1 CTGCAA

      32953 AATGACTCTT


Statistics
Matches: 18,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   18  1.00

ACGTcount: A:0.33, C:0.40, G:0.17, T:0.10


Consensus pattern (12 bp):   
CTGCAACAAGCC

Left flanking sequence: Indices 32423 -- 32922
CCAGCTTATGGAATCAAAGTACCGACGATTCAATGGGATCACAATCTCGAGATGGCCATTGTGAC
TCAACCTATGTGATGCACTATACCACCATGCAAGTTAAGGTTTCGCGAACTTCCACCACAGATCA
TCAAAAGTAACGAGTAGCCCCTGTGATGAATCGGTATTCTCATGGCACTATATTATACAGACCGT
GTTAACAGAGAAGAATTTCTTTTCACTGTTTCCTACCTATTGAACAGCTCCATTCTTCGCTAATG
CAGGGGCGACTTGACGCGTACGGGTGATTTTCGGTTTTAGTGAGGTATGGACGCGATGCGCTTAA
CCGTTGTGCAGTTGCATGGGCCCCTGGAGGAACTCTACCCGGGAAGGGAGCGCAAATCTCTTCAA
AAGCTTATTATTGGGGTAGTATGGGGGAAGAAGAGCTACCGTGGTGGATAGGAGCGCAAGAAGTC
GCGTCACCGGTGGACCACTTTCCAATACCAAGAGGGGCAATGGCA


Right flanking sequence: Indices 32953 -- 33452
AATGACTCTTCTCTTTAGTAACACCGTGTGAAGTAGGGTGGATTCTTGGTGAATACACTTCTGGT
ACCTTCCCGTTCAATGCATACGGTCTGGACATGCAGTCGCCATTGAATCACCCTAGACTCGTCCA
TAAGCTAAATTCACACGCATTCTCATACAAATACCCACAGTCATACACATACCCATACTCATACA
TGCCCACACACCATTAACAGTCTGCTGTTACCATCCTTTATACCACTCTCAAGTCTCCTGCACAC
AACACCACCCATCCATACCTGGCCCAATTCCCCACGCCCAGGGCCAAAACAAACCCACGACCAGC
ATCCACCCAGCTCTCTAACCCCTCCACAACCCCCAAACAGCAGTCACCTACTCAATTGCTCCCCG
TTCTCTCCCCCTCCCCCTGTCTCTCCGCCTCCACCACATCCTCCCCACCACCCTCGTTATCTCCT
GCACACAACCGAACGCACCACCGTCTTATACCACCAGCCTCACCA



Found at i:33128 original size:18 final size:18

Alignment explanation


    Indices: 33104--33147  Score: 61
    Period size: 18  Copynumber: 2.4  Consensus size: 18

      33094 CACACGCATT

                              
      33104 CTCATACAAATACCCACA
          1 CTCATACAAATACCCACA

            *       *       * 
      33122 GTCATACACATACCCATA
          1 CTCATACAAATACCCACA

                    
      33140 CTCATACA
          1 CTCATACA

      33148 TGCCCACACA


Statistics
Matches: 22,  Mismatches: 4, Indels: 0
        0.85            0.15        0.00

Matches are distributed among these distances:
  18   22  1.00

ACGTcount: A:0.41, C:0.36, G:0.02, T:0.20


Consensus pattern (18 bp):   
CTCATACAAATACCCACA

Left flanking sequence: Indices 32604 -- 33103
ATTATACAGACCGTGTTAACAGAGAAGAATTTCTTTTCACTGTTTCCTACCTATTGAACAGCTCC
ATTCTTCGCTAATGCAGGGGCGACTTGACGCGTACGGGTGATTTTCGGTTTTAGTGAGGTATGGA
CGCGATGCGCTTAACCGTTGTGCAGTTGCATGGGCCCCTGGAGGAACTCTACCCGGGAAGGGAGC
GCAAATCTCTTCAAAAGCTTATTATTGGGGTAGTATGGGGGAAGAAGAGCTACCGTGGTGGATAG
GAGCGCAAGAAGTCGCGTCACCGGTGGACCACTTTCCAATACCAAGAGGGGCAATGGCACTGCAA
CAAGCCCTGCAACAAGCCCTGCAAAATGACTCTTCTCTTTAGTAACACCGTGTGAAGTAGGGTGG
ATTCTTGGTGAATACACTTCTGGTACCTTCCCGTTCAATGCATACGGTCTGGACATGCAGTCGCC
ATTGAATCACCCTAGACTCGTCCATAAGCTAAATTCACACGCATT


Right flanking sequence: Indices 33148 -- 33647
TGCCCACACACCATTAACAGTCTGCTGTTACCATCCTTTATACCACTCTCAAGTCTCCTGCACAC
AACACCACCCATCCATACCTGGCCCAATTCCCCACGCCCAGGGCCAAAACAAACCCACGACCAGC
ATCCACCCAGCTCTCTAACCCCTCCACAACCCCCAAACAGCAGTCACCTACTCAATTGCTCCCCG
TTCTCTCCCCCTCCCCCTGTCTCTCCGCCTCCACCACATCCTCCCCACCACCCTCGTTATCTCCT
GCACACAACCGAACGCACCACCGTCTTATACCACCAGCCTCACCACCCCTTCCATCCCCCCATGA
CCCTGCCCGCGTCCTGGCGCCAGTTCCAGCTCTATGACTTCACTCCCATCCGCGACCCCAACCTG
CTGGAGACCGAGCTGCTGCTCTTTTCCGACGCCCTGGTGCTGGCAATCAACGCCCTGGGGGACAC
CCTCCTCGTAGCCGACCACAACGCCTACGTCAAGCTCGTGCTGAT



Found at i:36409 original size:51 final size:49

Alignment explanation


    Indices: 36333--36434  Score: 152
    Period size: 51  Copynumber: 2.0  Consensus size: 49

      36323 TGGTGGAAGC

                                                    *        
      36333 AGAGTAGAATGAGGAGAGTGGAGTTGGAAGCAGAGTAGAATAGGAGCAG
          1 AGAGTAGAATGAGGAGAGTGGAGTTGGAAGCAGAGTAGAAAAGGAGCAG

                                                            *   
      36382 AGAGTAGAATGGAAGCG-GAGTGGAGTTGGAAGCAGAGTAGAAAAGGATCAG
          1 AGAGTAGAAT-G-AG-GAGAGTGGAGTTGGAAGCAGAGTAGAAAAGGAGCAG

              
      36433 AG
          1 AG

      36435 TAGACTGGTG


Statistics
Matches: 48,  Mismatches: 2, Indels: 4
        0.89            0.04        0.07

Matches are distributed among these distances:
  49   10  0.21
  50    1  0.02
  51   36  0.75
  52    1  0.02

ACGTcount: A:0.39, C:0.05, G:0.42, T:0.14


Consensus pattern (49 bp):   
AGAGTAGAATGAGGAGAGTGGAGTTGGAAGCAGAGTAGAAAAGGAGCAG

Left flanking sequence: Indices 35833 -- 36332
TGCCTCACCGAGAACGGGCAGGAGTTTGTCCCGCTCGGGCTCGTGAAGGACCTCTTGATCGACCA
CTTGGAGCAGCAGCAGCGCGAGATCACCACGAACTCAAAGCTCATCGAGAACTACGAGCAGGAGC
TGCTGGCCAACTCGCTCAAGCTCACCGAGCTCACCAAGAAGCCGTTCGTCATCCAGAACACCAAG
TGCAGCGAGTGCAACCAGCGGCTCGAGTTCCCCGTGGTCCACTTCAAGTGCAAGCACTCGTACCA
CCAGAAGTGTCTTTCGAACAACCTTGTGGCCACGCTGGCGGTGGTGAACGGGGGGCGGGTGCTGG
ACGAAAGCCACTGTCCCAAGTGCTTCCAGGTGGTGGACGAGCCGCGCAACTTTGACAGTCGGGAC
GAGATCGAGGTGTTTGACAGTTCGTTGGCGCAGGCGGACGACAAGTTCAAGGTGGTGAGCGATTA
CTTTGGGCGTGGAGTGATGGATTCCGATGCCACGTTGGTGGAAGC


Right flanking sequence: Indices 36435 -- 36934
TAGACTGGTGGATATAGAGATGAATAGAGACACACGGCTGATCACGTCAAAAAGTTAGACACCGG
ATCAGAGAAAACGCACGGGAGTCACTGGAAATCTGTAGGTTTCCGCAAGACGAACCTACCACACC
AGCATATGCCATGCTAGATTGTGGGTTTGTGTCTTCCTTTTGGTAGTCATTTGAACATTTTCGTT
ACTGTCTGGCCAACCACGCTTCAATCGAGCCAATAGCCTACGAACCATTGTGAACTACTCCCGAT
ATCTCAGTCTAAGCCCCTGCGTTGTTTTGTGTCTCCGTGTAGTCCTTTAGAGAAATACGAGTCTG
CTGAATAATCGAGAAACAACGGTTCGAAACCAAGAGAAGCAAAAGACTTTGCGTATAACGAAGAG
CAGATCGTGGATAGATGCGTTTACGCCTTCTCTTTCACACCCTGAGTCTTGTTTGCCTCGCGGTC
ACTGATTGTCGTCTTATCGTTTACCTCGTTTTCGCTCAAGTAACG



Found at i:37435 original size:18 final size:18

Alignment explanation


    Indices: 37403--37437  Score: 52
    Period size: 18  Copynumber: 1.9  Consensus size: 18

      37393 GGTGACCCAA

                     **       
      37403 TTTCGAACATGTTGCAAG
          1 TTTCGAACAAATTGCAAG

                             
      37421 TTTCGAACAAATTGCAA
          1 TTTCGAACAAATTGCAA

      37438 TTCGATTCTT


Statistics
Matches: 15,  Mismatches: 2, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  18   15  1.00

ACGTcount: A:0.34, C:0.17, G:0.17, T:0.31


Consensus pattern (18 bp):   
TTTCGAACAAATTGCAAG

Left flanking sequence: Indices 36903 -- 37402
TTATCGTTTACCTCGTTTTCGCTCAAGTAACGTGGTCATGACCTGATACGAGGTCCTTAAATAGC
CTGGATTACCAGCACAATCTTTACCGATGCCTTCTTTGCACGCTCGCGACACATACCGCAACACG
TTCCCCGCCTACTGGTTTGCCTGGCTTGCCCTCATTGGGGTGTTCATCGTGCTTGGGGTGCTCTG
GGAGTACTTGAAGCGACGACGGAGAACCGTGAACGTGGTCCAGGTTCCACCGGTTCAACCAATGC
CCCCAATGCTGCCCATGCCGCCGGTAGTCGAGGTGCAACACGTTTTCCCGAACCAGAAGATTTCG
GAGCCTGCTCCAGCGTACTCGAGGTACTAGGCTGACAATTCAGTCAGGGCGTCTCCCCAACGTGA
CCCATTCTCGGAAGGGCCAGATGAGCCAACCACACAAATTCTGCAACGTGAGCCCTCCAAAAAGC
TGGTTCGACGATTTATTGATTCAATGAGCCTCTGAGGTGACCCAA


Right flanking sequence: Indices 37438 -- 37937
TTCGATTCTTGATAGACCCAAGATTAGAAACCACACACTGTCAAATAAAAGTTAAATTCTGCTTA
CCTTTGCCGCCACTCTATAGGGCCATCTTCCCCCACAATTGTAGTCACCCAGACAGGCTCACTAG
TTTTTCCGGGCCAGAAAATAAACACCCCACTTGTCGGACATTCACGCCATTCCGCGCACCTTGTG
CCGAGCCTGGATTTCCCGAGAATTTTTCCATGGTTCGATCTGAGCGGTGTCTGTTTTGGGTGAAT
GTCGCTTTCGTATTTTGGTAGGTGGCTATTGTTGTAGAATTTGCACCCACCGATTGTGGGGTGAA
AAAACCCCACATTTGGAAACGCGCAGAGATAATAGGTAAAATCAATCGGGGAAAATCTCATGTGA
TGTTTGCGATGGTGTGTCATTTTTAGTGCTGTCAAGAAAGTGCATCGTCCATTAGGTGTAGACGA
CGATAATTAGCGAGAAATTGAACAGAGACAAATTGAAGAGTCTGA



Found at i:42571 original size:31 final size:31

Alignment explanation


    Indices: 42533--42620  Score: 140
    Period size: 31  Copynumber: 2.8  Consensus size: 31

      42523 ATTAAGGTTT

                    *                      
      42533 CATTCCTGCAACTACTCGTAGTTAGTGGCTA
          1 CATTCCTGTAACTACTCGTAGTTAGTGGCTA

                                    *      
      42564 CATTCCTGTAACTACTCGTAGTTAATGGCTA
          1 CATTCCTGTAACTACTCGTAGTTAGTGGCTA

                      *               
      42595 CATTCCTGTAGCTACCTCGTAGTTAG
          1 CATTCCTGTAACTA-CTCGTAGTTAG

      42621 ACTACCGTAT


Statistics
Matches: 52,  Mismatches: 4, Indels: 1
        0.91            0.07        0.02

Matches are distributed among these distances:
  31   42  0.81
  32   10  0.19

ACGTcount: A:0.23, C:0.25, G:0.18, T:0.34


Consensus pattern (31 bp):   
CATTCCTGTAACTACTCGTAGTTAGTGGCTA

Left flanking sequence: Indices 42033 -- 42532
TGGCGTGCCAGATGCCCTTGTTCATGCCATTCCCGTGGAGAAAGACGAGGTTGACGGGCTGGGCC
GGCTGGGTGGCCGCGGTGTACTTGCGGTAGCAGATCTCGAGCGTGTCGCCCTCGCAGGCCACCAG
CCCAGCCTCTCTGCCGCCCACTGCGGCCACGGTGACGGTTCTGTAGCTGTAGAGCTCTGACTTCT
CGGGCACCAACGGCATAATCGGTGGATGGCTGATCGCTTACATGTGATAATGGTGTGCATAGACT
ACGACACCGACCACCGACTGACCGACCGGTGCGATCTGGAATCAGGGTCAGGAGTCAAGGGGTTA
AAGGCTCCGTTTGAGGTTTTCTTGTCGTTCTTAGCCGTGGTGGATTTCTTATTCAGATCGAATGG
TACGAAATGCCGTATGGAATTAAATGGAGATCAGTAGTCATTAGTCGGGAGACTCTATTTTACAG
TTTGACAGTATCCAGGAATGTAGCTTATGTAACCGATTAAGGTTT


Right flanking sequence: Indices 42621 -- 43120
ACTACCGTATTTGGTTAGATGCATAATTGGTATATGGAGCCAACACCGACTACACCCGGACGACA
CACCCGTGCTTGAGGCTCATGGTAAGTAGAAGCGTCTTGAGCGGGGGGTACACGCCGTCGCTGGC
GTCCTGGAGCGTGGGAAACTCCTGGAGCAACCGCACTACTACATACGCTATCTGAGTAAGGGCAA
ACTGCTGGCCTAGACACACCCGGGGCCCGCCATTAAACGGAAGATACGCCCACCCGAGCCTCTTG
GTGCGGTCGTCGAGCCAGCGCGACGGGTCAAACACCTCAGCGTCCGCCCCGTAGTACCTGGGGTC
CCGGTGCATGAGGTAGGCCGAGTAGGTGACGTTGGAGCCCTTGGGCACGTAGGCAGGCTGCAGCC
CGTCCCCGCCACCGCGGGGCAACGTGGTGGCCACGCGGTTGAAGCGGGCGTTCTCGAACACGATG
GGGTAGAGCCGGAGCGTCTCGGAAACCACCGCCTGGAGGTACTTG



Found at i:44232 original size:12 final size:12

Alignment explanation


    Indices: 44223--44267  Score: 63
    Period size: 12  Copynumber: 3.8  Consensus size: 12

      44213 CCCAGGGGTG

                        
      44223 GTCTCTGGGGCC
          1 GTCTCTGGGGCC

            *           
      44235 ATCTCTGGGGCC
          1 GTCTCTGGGGCC

                     *  
      44247 GTCTCTGGGACC
          1 GTCTCTGGGGCC

                *    
      44259 GTCTTTGGG
          1 GTCTCTGGG

      44268 TTGTAAGGTG


Statistics
Matches: 29,  Mismatches: 4, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  12   29  1.00

ACGTcount: A:0.04, C:0.29, G:0.38, T:0.29


Consensus pattern (12 bp):   
GTCTCTGGGGCC

Left flanking sequence: Indices 43723 -- 44222
CGGACGCAACATCGCCCGCGAGTGTTTCCACCCGTCCCCGTCCAAGGTGAACACGCCGTCGCCCA
AAAGGGGTGCGAACTGGGCGTGGCGTTTGCCTAGGCCAAACTCCGAGAATTGGGTCAGGAGGATG
GCCTTGACGTTTTCGGGGTCGGTGGTCACGATCACGTCAGCCCCCGACACTTTCATCCGCACCGT
CTGCCGGGTGGGGTTGTCCACCACCATCTGGCTTCCGAACTCGAGGTAGTCGCCCCGGTCGGCCA
TTTTTGCGAGCACATACATGTTTTTAAAGCCGAAGCAGTGGTCAATGGCGGCGCGGGGAGGGCTC
GCTGCGCCCAACCGGCGGGCCTGCCACCGGTGGTACGCGGTGGAGACCGCCCAGTAGGCGAGGAC
CGCAACTATGACTAAGCCAATCATGGTACTAAGAGTAAGCGAAAAATGCGAATAGTAGTAGAAGA
TAGGGTGGAAAAGGGTTGGATAAGGAGAGAGTGGACCCAGGGGTG


Right flanking sequence: Indices 44268 -- 44767
TTGTAAGGTGTTTTGGTAGGGTGGCTCAACCTGTGCCTAGCTCTTCGTACGCATTTTGCCTTGCC
TTGACGTTCATTATGCGTGGATGTCGCGTGCGTGTTGGTGGCACAGAGTGCTCCAAGGCGTCAAA
ATGGGGCTTAAACCACGGTCATCGCGAGCGTTGAATGAACAAGAGCGGGGTCTTTGTGGAGTACG
TGATCGATCGCTTTGGGCTAGTGACAGAAATAGCACCATAAACACCATAAAAATAGACCCACTAC
AGAAATAGAACCACCTGTGCGGGCACAAAGCACGCGCGGCCCAAAATAGAACTCGCGTGCCCCAG
GCTAGCCCAAGCCCCACGTCCAACAAGTGGACGGCACCGGCGCATCTCGGCTTAGACGTCGCCTA
GGTACGCCCTAGGCTATTTGTAGCGATAACGGGGCCTCCAAACCTCCACAAACGGAAGAACAATG
CCCGGTGAAAATTAGCGCGAATTACGGACGCACCGTGGTCGTCTA



Found at i:44918 original size:9 final size:9

Alignment explanation


    Indices: 44906--44937  Score: 55
    Period size: 9  Copynumber: 3.6  Consensus size: 9

      44896 GGCTTACACG

                   * 
      44906 GGTGGCACC
          1 GGTGGCATC

                     
      44915 GGTGGCATC
          1 GGTGGCATC

                     
      44924 GGTGGCATC
          1 GGTGGCATC

                 
      44933 GGTGG
          1 GGTGG

      44938 AGTTTGGTCA


Statistics
Matches: 22,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
   9   22  1.00

ACGTcount: A:0.09, C:0.22, G:0.50, T:0.19


Consensus pattern (9 bp):   
GGTGGCATC

Left flanking sequence: Indices 44406 -- 44905
TAAACCACGGTCATCGCGAGCGTTGAATGAACAAGAGCGGGGTCTTTGTGGAGTACGTGATCGAT
CGCTTTGGGCTAGTGACAGAAATAGCACCATAAACACCATAAAAATAGACCCACTACAGAAATAG
AACCACCTGTGCGGGCACAAAGCACGCGCGGCCCAAAATAGAACTCGCGTGCCCCAGGCTAGCCC
AAGCCCCACGTCCAACAAGTGGACGGCACCGGCGCATCTCGGCTTAGACGTCGCCTAGGTACGCC
CTAGGCTATTTGTAGCGATAACGGGGCCTCCAAACCTCCACAAACGGAAGAACAATGCCCGGTGA
AAATTAGCGCGAATTACGGACGCACCGTGGTCGTCTAAAGTTGTTCGTGAATGACTCTACGCTTT
GTGGGGACCCTTGAGACACGTCTGTCCCAATAACGTACGATGTAAGCCACGCGTTCCCGACAACA
GACACCATCGGGACCCGCCTCGGGGCCACAAGCACGGCTTACACG


Right flanking sequence: Indices 44938 -- 45437
AGTTTGGTCACCTCGCGCTATTGTTCTTGTGGTATTGTTCCACGTGGGGTCCACGTTGGGTCCTG
CAGCTGCAAGCACGATAGCGAAACGCTCTTGTGGGAAACCAGAAGGGAAACCGTTCGAACGAGGG
CTTCTCGTGGACCTGCCATCGCGTGCGGCCACCCGTGTCGGATTGCCCGACGTGTTTTCCCCTCT
TCTCTTACTCCACTTTCCTTTCTGGATGACGTCAATGCATCTCACGTCACATAATGTCATAATGT
CTCATGTCTATTAGGTTCCAGCCCGATCAACGGGCACTATATCACAGTAATATACACAGCGGGAC
GGGATTAAACCTCGCCCGCCTTCTCGTCGCGGCGCTGGCGACACTGGCACTTGGCCCGCACCATC
TGGACGAGCAACAACACCACGAAAAACCCGATGGCGGCCCACTGGACCTCCGGCTTCGCAAAAAC
GCACGGGCTCTCCTTCGCGGACTCGATCTTGGTACACGCGGTACC



Found at i:46506 original size:8 final size:8

Alignment explanation


    Indices: 46495--46530  Score: 58
    Period size: 8  Copynumber: 4.8  Consensus size: 8

      46485 GAATCCACTG

                    
      46495 CTCCACCA
          1 CTCCACCA

                    
      46503 CTCCACCA
          1 CTCCACCA

                    
      46511 CT-C-CCA
          1 CTCCACCA

                    
      46517 CTCCACCA
          1 CTCCACCA

                  
      46525 CTCCAC
          1 CTCCAC

      46531 TACGCGATCT


Statistics
Matches: 26,  Mismatches: 0, Indels: 4
        0.87            0.00        0.13

Matches are distributed among these distances:
   6    5  0.19
   7    2  0.08
   8   19  0.73

ACGTcount: A:0.22, C:0.64, G:0.00, T:0.14


Consensus pattern (8 bp):   
CTCCACCA

Left flanking sequence: Indices 45995 -- 46494
GTGTGCAGTATAGGGTGGGCATCACCCAGTGGTGGAGGCTGCGAACAAAGGCGGGGAGATTGACG
AGGGCTTAGGGGACTCGTGTGACCACCGAAGGCTCGCTTCCAAGGCGAGACGTGAACCGGGGCGG
TTAGGGTTTACGAGGTTTGCTATTCTTGTATTGGGCGATTACGAGGTGGTGTGGTGTGGGTGGTG
TGGAAAGTTGAGTGTTGGCCTGGTGTTGGACTGGTTGTAGTTGCAGTGGTGCGTTCGGTGCGTTC
AGTGGTAGGTGTAGTTGCCAGGGTTTCCTCAAAGGGTTTTGGCCTTTGTTCTCTACGTCTCTTTA
CCTATTACCCTTTTCGATCATTTTTCTACCCCACTATTCGTCAATGCGATAAGGGACCACAAAGC
CCCGTTGACAACAGCGGCAATTACAATCAGGCATTGTAACTGAAAACAACACAGACATTCCAGAG
TGAAACAGGAACAAGAGCACCGTCAACCACCCAGCGAATCCACTG


Right flanking sequence: Indices 46531 -- 47030
TACGCGATCTCCCCCTTGATGCCAAGCAATCGAACAATGTACATGCCAAGCACGATCCCGTAATT
CAGACGATCGTTCGATATCTTGACCACATCCACTCACCACACTTGTCACCACACTCCACACTCCA
CACTCTACATCACATTCTCTAGCTCATTAATTCATATTATATAGCTAACTTACAACAACAAGGCA
CCAGCCAAGCCGACGGCACCAACGGCCATGCCGAGGGTACCAGCACCAGCGCCGGAGGACGAGGA
CTTCTTGTCCTTGTCGTCACCGTCACCGCCAGCAGCGGAAGCGGCCTTGGAGGTGGCAGCAGAAG
CACCGGACTTGACGTCAGAGACGGCGTCACCAGCCTTGGAGGTGATCTTGTCCTTGGTGTCCTGG
TCGTCACCGTCGTCGTCGGCGAAGGCAATAGCAACGAAAGCAGCAAAAACGGGGGTGAAGAACTT
CATATTTGATGAGGAATGTAGAGGGGGCCGGCTATCCTTTTTATA



Found at i:46519 original size:14 final size:14

Alignment explanation


    Indices: 46500--46528  Score: 58
    Period size: 14  Copynumber: 2.1  Consensus size: 14

      46490 CACTGCTCCA

                          
      46500 CCACTCCACCACTC
          1 CCACTCCACCACTC

                          
      46514 CCACTCCACCACTC
          1 CCACTCCACCACTC

             
      46528 C
          1 C

      46529 ACTACGCGAT


Statistics
Matches: 15,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  14   15  1.00

ACGTcount: A:0.21, C:0.66, G:0.00, T:0.14


Consensus pattern (14 bp):   
CCACTCCACCACTC

Left flanking sequence: Indices 46000 -- 46499
CAGTATAGGGTGGGCATCACCCAGTGGTGGAGGCTGCGAACAAAGGCGGGGAGATTGACGAGGGC
TTAGGGGACTCGTGTGACCACCGAAGGCTCGCTTCCAAGGCGAGACGTGAACCGGGGCGGTTAGG
GTTTACGAGGTTTGCTATTCTTGTATTGGGCGATTACGAGGTGGTGTGGTGTGGGTGGTGTGGAA
AGTTGAGTGTTGGCCTGGTGTTGGACTGGTTGTAGTTGCAGTGGTGCGTTCGGTGCGTTCAGTGG
TAGGTGTAGTTGCCAGGGTTTCCTCAAAGGGTTTTGGCCTTTGTTCTCTACGTCTCTTTACCTAT
TACCCTTTTCGATCATTTTTCTACCCCACTATTCGTCAATGCGATAAGGGACCACAAAGCCCCGT
TGACAACAGCGGCAATTACAATCAGGCATTGTAACTGAAAACAACACAGACATTCCAGAGTGAAA
CAGGAACAAGAGCACCGTCAACCACCCAGCGAATCCACTGCTCCA


Right flanking sequence: Indices 46529 -- 47028
ACTACGCGATCTCCCCCTTGATGCCAAGCAATCGAACAATGTACATGCCAAGCACGATCCCGTAA
TTCAGACGATCGTTCGATATCTTGACCACATCCACTCACCACACTTGTCACCACACTCCACACTC
CACACTCTACATCACATTCTCTAGCTCATTAATTCATATTATATAGCTAACTTACAACAACAAGG
CACCAGCCAAGCCGACGGCACCAACGGCCATGCCGAGGGTACCAGCACCAGCGCCGGAGGACGAG
GACTTCTTGTCCTTGTCGTCACCGTCACCGCCAGCAGCGGAAGCGGCCTTGGAGGTGGCAGCAGA
AGCACCGGACTTGACGTCAGAGACGGCGTCACCAGCCTTGGAGGTGATCTTGTCCTTGGTGTCCT
GGTCGTCACCGTCGTCGTCGGCGAAGGCAATAGCAACGAAAGCAGCAAAAACGGGGGTGAAGAAC
TTCATATTTGATGAGGAATGTAGAGGGGGCCGGCTATCCTTTTTA



Found at i:47458 original size:12 final size:12

Alignment explanation


    Indices: 47441--47465  Score: 50
    Period size: 12  Copynumber: 2.1  Consensus size: 12

      47431 GGAAGCGAGT

                        
      47441 TGGTAGAGGTGG
          1 TGGTAGAGGTGG

                        
      47453 TGGTAGAGGTGG
          1 TGGTAGAGGTGG

             
      47465 T
          1 T

      47466 AGAGGTGGTA


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   13  1.00

ACGTcount: A:0.16, C:0.00, G:0.56, T:0.28


Consensus pattern (12 bp):   
TGGTAGAGGTGG

Left flanking sequence: Indices 46941 -- 47440
GAAGGCAATAGCAACGAAAGCAGCAAAAACGGGGGTGAAGAACTTCATATTTGATGAGGAATGTA
GAGGGGGCCGGCTATCCTTTTTATAGTTGAAATTTGCCACTGATTGATCGCTTATGTAAATACTT
TGCTATTTACAGTTGCTAAGCAACCGGCGAGATCGAGCCCAGAAATCGAGAAAAAAAAGCTGGGA
AAAGGAACCACGGCCAATTGACCCAAGAAAAATGGTTTGCCGGGTGTCTCGTGGCGAGATCGGGG
CTTATTCGGGGCTCAATCGTCGGGTTGGCCGCTGGTGTCACCAGTGACACACCCATGACGTAATG
CCTGCACAGAGCCACTCCCCTATTCACCTTTGCTATCGCTGGTTGTGGGGGAACCAAAGAGGGGT
GGGGCTGTGAAACGGCTTGAGCTTGCTCATTGCACGGCGTTAACCGAATGTGTCGAACACAGAGT
TGCCAAGACCGAGGTACGAGGAGACGAATTGTAACGGAAGCGAGT


Right flanking sequence: Indices 47466 -- 47965
AGAGGTGGTAGAGGTGGCCTACACACCCGATGACGCAAACCCGAGGCGTAGGCCCGTAGCATTCC
CGGTAAAATTGCTCGGAATGTGGGCTCGGTATTGTCAATGTTGCTCCCAGTCGTCGCGGGTCAGG
TGATGGACGCACCGCTTCGGTGTGGGGAGGTGGGATGACGCGTTGTTCATGGCGACCGCCCAGGT
GGGCTTCGCACTTTTCTTTTCGTTCCATCGTTAAACCCTATTTGGGTTCTATTTAAGGTGTCCTA
TTTGGGGTGTCCCAATCGGGGTGTTCCCAATCGGGCATGGTCTAAAGCTTGTTCTTCGTTTGTTC
TTCGTATCGCGTGCTATTAATCTATAAGTCGTAATCATTAGTGCTGGTTCTTGGCGGCCTCCTGC
TCGTCCAAATACTTCTTCCACTCGGGCACCGGGGCCGGCTGCTTCTTCTTGATCTCGTTGTCTCT
GATCGTAAGCAACAACGTGCCCAAAAGCAACACCACCGAGATGGC



Found at i:47463 original size:9 final size:9

Alignment explanation


    Indices: 47451--47482  Score: 64
    Period size: 9  Copynumber: 3.6  Consensus size: 9

      47441 TGGTAGAGGT

                     
      47451 GGTGGTAGA
          1 GGTGGTAGA

                     
      47460 GGTGGTAGA
          1 GGTGGTAGA

                     
      47469 GGTGGTAGA
          1 GGTGGTAGA

                 
      47478 GGTGG
          1 GGTGG

      47483 CCTACACACC


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   9   23  1.00

ACGTcount: A:0.19, C:0.00, G:0.59, T:0.22


Consensus pattern (9 bp):   
GGTGGTAGA

Left flanking sequence: Indices 46951 -- 47450
GCAACGAAAGCAGCAAAAACGGGGGTGAAGAACTTCATATTTGATGAGGAATGTAGAGGGGGCCG
GCTATCCTTTTTATAGTTGAAATTTGCCACTGATTGATCGCTTATGTAAATACTTTGCTATTTAC
AGTTGCTAAGCAACCGGCGAGATCGAGCCCAGAAATCGAGAAAAAAAAGCTGGGAAAAGGAACCA
CGGCCAATTGACCCAAGAAAAATGGTTTGCCGGGTGTCTCGTGGCGAGATCGGGGCTTATTCGGG
GCTCAATCGTCGGGTTGGCCGCTGGTGTCACCAGTGACACACCCATGACGTAATGCCTGCACAGA
GCCACTCCCCTATTCACCTTTGCTATCGCTGGTTGTGGGGGAACCAAAGAGGGGTGGGGCTGTGA
AACGGCTTGAGCTTGCTCATTGCACGGCGTTAACCGAATGTGTCGAACACAGAGTTGCCAAGACC
GAGGTACGAGGAGACGAATTGTAACGGAAGCGAGTTGGTAGAGGT


Right flanking sequence: Indices 47483 -- 47982
CCTACACACCCGATGACGCAAACCCGAGGCGTAGGCCCGTAGCATTCCCGGTAAAATTGCTCGGA
ATGTGGGCTCGGTATTGTCAATGTTGCTCCCAGTCGTCGCGGGTCAGGTGATGGACGCACCGCTT
CGGTGTGGGGAGGTGGGATGACGCGTTGTTCATGGCGACCGCCCAGGTGGGCTTCGCACTTTTCT
TTTCGTTCCATCGTTAAACCCTATTTGGGTTCTATTTAAGGTGTCCTATTTGGGGTGTCCCAATC
GGGGTGTTCCCAATCGGGCATGGTCTAAAGCTTGTTCTTCGTTTGTTCTTCGTATCGCGTGCTAT
TAATCTATAAGTCGTAATCATTAGTGCTGGTTCTTGGCGGCCTCCTGCTCGTCCAAATACTTCTT
CCACTCGGGCACCGGGGCCGGCTGCTTCTTCTTGATCTCGTTGTCTCTGATCGTAAGCAACAACG
TGCCCAAAAGCAACACCACCGAGATGGCCTGGGCGTAGACACGCG



Found at i:47746 original size:14 final size:15

Alignment explanation


    Indices: 47729--47760  Score: 57
    Period size: 15  Copynumber: 2.2  Consensus size: 15

      47719 TGTCCTATTT

                           
      47729 GGGGTG-TCCCAATC
          1 GGGGTGTTCCCAATC

                           
      47743 GGGGTGTTCCCAATC
          1 GGGGTGTTCCCAATC

               
      47758 GGG
          1 GGG

      47761 CATGGTCTAA


Statistics
Matches: 17,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  14    6  0.35
  15   11  0.65

ACGTcount: A:0.12, C:0.25, G:0.41, T:0.22


Consensus pattern (15 bp):   
GGGGTGTTCCCAATC

Left flanking sequence: Indices 47229 -- 47728
CCGCTGGTGTCACCAGTGACACACCCATGACGTAATGCCTGCACAGAGCCACTCCCCTATTCACC
TTTGCTATCGCTGGTTGTGGGGGAACCAAAGAGGGGTGGGGCTGTGAAACGGCTTGAGCTTGCTC
ATTGCACGGCGTTAACCGAATGTGTCGAACACAGAGTTGCCAAGACCGAGGTACGAGGAGACGAA
TTGTAACGGAAGCGAGTTGGTAGAGGTGGTGGTAGAGGTGGTAGAGGTGGTAGAGGTGGCCTACA
CACCCGATGACGCAAACCCGAGGCGTAGGCCCGTAGCATTCCCGGTAAAATTGCTCGGAATGTGG
GCTCGGTATTGTCAATGTTGCTCCCAGTCGTCGCGGGTCAGGTGATGGACGCACCGCTTCGGTGT
GGGGAGGTGGGATGACGCGTTGTTCATGGCGACCGCCCAGGTGGGCTTCGCACTTTTCTTTTCGT
TCCATCGTTAAACCCTATTTGGGTTCTATTTAAGGTGTCCTATTT


Right flanking sequence: Indices 47761 -- 48260
CATGGTCTAAAGCTTGTTCTTCGTTTGTTCTTCGTATCGCGTGCTATTAATCTATAAGTCGTAAT
CATTAGTGCTGGTTCTTGGCGGCCTCCTGCTCGTCCAAATACTTCTTCCACTCGGGCACCGGGGC
CGGCTGCTTCTTCTTGATCTCGTTGTCTCTGATCGTAAGCAACAACGTGCCCAAAAGCAACACCA
CCGAGATGGCCTGGGCGTAGACACGCGCCTGGACAATCTTCTGGGCCTTGGTCATGTAGCGGTCG
CGGTTGACGAGGGTCCACGAGCCCCAGAGCGACGCGGCCCACGCGCCCACAATCAACGGGTACTT
GTACTCGTTCACCTGGTGGATGAGCTTCTCCAGCTCCGTCAACTGCGCCATCAACTGCTCCTTCT
CCTCCAGCATTTTCCGCAAGTGCGAGCCCTGGTACTTTTCCTTGTCGAACGAGAGCGAGCCGTCG
TCGGCGTAGAACGCAGCCACACCGATGGTGGGGGTGGCAAACAAC



Found at i:49781 original size:12 final size:12

Alignment explanation


    Indices: 49760--49791  Score: 55
    Period size: 12  Copynumber: 2.7  Consensus size: 12

      49750 AATCGAATGA

                        
      49760 AGCAATTGAAAG
          1 AGCAATTGAAAG

               *        
      49772 AGCCATTGAAAG
          1 AGCAATTGAAAG

                    
      49784 AGCAATTG
          1 AGCAATTG

      49792 GCCACAAGAA


Statistics
Matches: 18,  Mismatches: 2, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  12   18  1.00

ACGTcount: A:0.44, C:0.12, G:0.25, T:0.19


Consensus pattern (12 bp):   
AGCAATTGAAAG

Left flanking sequence: Indices 49260 -- 49759
TGGGCAGTGCCTGGGCATTGCCTTACACCACGGTGGATCCCGCGACTTTCTGCCAGTGGTGTGCC
TTAGACTACGCACGATGACGTGGGTGGTGGCCAGCAACGGAACTGGGCTTCGAACGGGGATTGAT
GCTGTCTATCAGCCATGCACAATGACAGCCGTGGCGCAACGCATGTTGGGACCGCAAAGGTGGTT
GCTGTTTCAGGGACAACGTGGTGGCAGGTGATAAGGTCACGGCAGGCGTAGATTATGCGGTAAGC
AGCCTTGTGAGATAGGCAGTTGTGCTGATAGCCGTTGTGGCTGATAGGTCGTGGCTGATAGGCTG
TTGTGGCTGCTTGGCAAATAGCTTATGGATGCGACTGGGTGACTGGGTCTAATGCGACTGGGTGC
CACTGGACCCATTGTGACTGGCCACTGGACGCACTGATTTACGCTCGTGTGCTTATCACACTCAA
TGGCCATTGTTAGTGCGAAATGGCTGCAAAATGAAAATCGAATGA


Right flanking sequence: Indices 49792 -- 50291
GCCACAAGAAGTGAAAATCAACGTCACAAAGAGAACAATATGTGGGCAATACCGCGTCTGCGTCC
ACCACACCACCTAAATTTGGATTTAATTGTGAGTTTGTTATGCGTAACTAGATAGACACTCAAGT
CTGATAGAAGTGGACGACCTAAACCAATACCTAAAATTAAAGGTGAAAATCTAAATATAGCTGGT
AATGTATGTTCAATTTCAATTCTACTCTCATAACACCCACAGCGGTTGCATTGCTATCCCTAGCA
TCAGTACTGCTTGTTTCTCCTGCACGTCTTTTATATGGTTTACAACAAAAGTACCGTAACCACAC
GTTCAATGCAATTTAAGCTATCGTTCTTGTTGGGCAGGGTTACTCATTGCATGCTGTGATCATGA
CTTATGTGTAGTTTATCTCTGAATTGTCATATTTACTTTTGTATCCCTGACATTACTCCCCTTCA
TAACCTTCTTCTACTATTAATAATTCACAAGGTAAGCACCAGTGT



Found at i:51688 original size:42 final size:44

Alignment explanation


    Indices: 51637--51740  Score: 121
    Period size: 42  Copynumber: 2.5  Consensus size: 44

      51627 GGAACCGGGT

                                   *   *                 
      51637 AAAC-TAGGGT-GCTTTTGGGTTGAA-TCTGGGGTGGTAGGAGTC
          1 AAACGTAGGGTCG-TTTTGGGTTCAACCCTGGGGTGGTAGGAGTC

                                            *       *   
      51679 AAA-GTAGGGTCGTTTTGGG-TCAACCCTGGGTTGGTAGGGGTC
          1 AAACGTAGGGTCGTTTTGGGTTCAACCCTGGGGTGGTAGGAGTC

                                 
      51721 AAACG-AGGGTCGTTTTGGGT
          1 AAACGTAGGGTCGTTTTGGGT

      51741 CAAACTAGGG


Statistics
Matches: 53,  Mismatches: 4, Indels: 9
        0.80            0.06        0.14

Matches are distributed among these distances:
  41    3  0.06
  42   48  0.91
  43    2  0.04

ACGTcount: A:0.18, C:0.12, G:0.40, T:0.30


Consensus pattern (44 bp):   
AAACGTAGGGTCGTTTTGGGTTCAACCCTGGGGTGGTAGGAGTC

Left flanking sequence: Indices 51137 -- 51636
ACCGGCCCACGTTGAACGTCTTGAGCACCGTGCCCAGCGCGATGTCCACCAACTCCGCGCTCATG
TTCTTGACCCGCACCACCATCCCCACAAACTCCATGGTGACGAGGGTGGGCCGGTTGATCAGGAA
CGCCAGGTCGGTGATGGGCACCAGCGGGGCCAGCAGCTGCAGAGCCAGCCGGTGCATCGCGGCAA
AGTCGTTCTTGTTGAACCCCTGGGCCGGGCTCATCGGGGCTACCGGGACCGCAGCCTGGTTGTAG
TGCCCCAGGCGCACCGGGAGCTTGCGGAACTTCCAGTTGTTGTTGACGACCGTGGCCACCAAGAG
CTCGGGGTGGGTGCCTACCTGGCACACGATGCGGTCGTTGATGCGGGGGGTGACGAGCTTTTTCG
CCAGGAGGAGCTTGAGGTGTTTGGCGGGGGCCAGGGCCACCAGGGATGACTGGGCGAGGGGGGTG
GCGGAGAAATCGGGCGAACCAGGGTGGTTTTTGGTGGAACCGGGT


Right flanking sequence: Indices 51741 -- 52240
CAAACTAGGGTCGTTTGGGGTCAAACGAGGGTCGCTATGGTCCAAAACCGGGTCGTTTTCGCTCA
AAATAGCACTTTCCGGGGTCAAACCACCGAGTTTCTGCTCGTTTTGGCCCAAACCAGCACGGTTA
GGGCTCAAACCAGCGAGTTTCGACTCGTTTCCACCAACTTTCAGCTCATTTCCACCAACTCTCGG
CTCATTTCCACCAAGCTTCGGCTCATTTCCTCTCCCCTCCCCCTCAAACACCTTCAACATGTCCT
GCACCTTGATCGCCCCCTCCTGGCACAGCACCGTCACCAAGTGGCCCAGCTCCACCACCACCACC
ATCTCCTCCTTCTGCAACTTGGCCATCTCGTCCGTCTCCGGAAAATTCCCGTTGATCGCCAGCGA
CACCGACGTCAAACTCGCCGCCAGCCCGCGCCGCAGCCCACCCACGCGGCCCCGGTGCTTCTTCT
GCATCACCTTACGGGCCAAGAACCCGGGCACCGTCCGGCGCCGGA



Found at i:51700 original size:21 final size:21

Alignment explanation


    Indices: 51676--51774  Score: 78
    Period size: 21  Copynumber: 4.7  Consensus size: 21

      51666 GGTGGTAGGA

                              *  
      51676 GTCAAAGTAGGGTCGTTTTGG
          1 GTCAAAGTAGGGTCGTTTGGG

                  **      * * *   
      51697 GTCAACCCT-GGGTTGGTAGGG
          1 GTCAA-AGTAGGGTCGTTTGGG

                               *  
      51718 GTCAAACG-AGGGTCGTTTTGG
          1 GTCAAA-GTAGGGTCGTTTGGG

                  *              
      51739 GTCAAACTAGGGTCGTTTGGG
          1 GTCAAAGTAGGGTCGTTTGGG

                            
      51760 GTCAAACG-AGGGTCG
          1 GTCAAA-GTAGGGTCG

      51775 CTATGGTCCA


Statistics
Matches: 58,  Mismatches: 15, Indels: 10
        0.70            0.18        0.12

Matches are distributed among these distances:
  21   57  0.98
  22    1  0.02

ACGTcount: A:0.19, C:0.15, G:0.39, T:0.26


Consensus pattern (21 bp):   
GTCAAAGTAGGGTCGTTTGGG

Left flanking sequence: Indices 51176 -- 51675
CGATGTCCACCAACTCCGCGCTCATGTTCTTGACCCGCACCACCATCCCCACAAACTCCATGGTG
ACGAGGGTGGGCCGGTTGATCAGGAACGCCAGGTCGGTGATGGGCACCAGCGGGGCCAGCAGCTG
CAGAGCCAGCCGGTGCATCGCGGCAAAGTCGTTCTTGTTGAACCCCTGGGCCGGGCTCATCGGGG
CTACCGGGACCGCAGCCTGGTTGTAGTGCCCCAGGCGCACCGGGAGCTTGCGGAACTTCCAGTTG
TTGTTGACGACCGTGGCCACCAAGAGCTCGGGGTGGGTGCCTACCTGGCACACGATGCGGTCGTT
GATGCGGGGGGTGACGAGCTTTTTCGCCAGGAGGAGCTTGAGGTGTTTGGCGGGGGCCAGGGCCA
CCAGGGATGACTGGGCGAGGGGGGTGGCGGAGAAATCGGGCGAACCAGGGTGGTTTTTGGTGGAA
CCGGGTAAACTAGGGTGCTTTTGGGTTGAATCTGGGGTGGTAGGA


Right flanking sequence: Indices 51775 -- 52274
CTATGGTCCAAAACCGGGTCGTTTTCGCTCAAAATAGCACTTTCCGGGGTCAAACCACCGAGTTT
CTGCTCGTTTTGGCCCAAACCAGCACGGTTAGGGCTCAAACCAGCGAGTTTCGACTCGTTTCCAC
CAACTTTCAGCTCATTTCCACCAACTCTCGGCTCATTTCCACCAAGCTTCGGCTCATTTCCTCTC
CCCTCCCCCTCAAACACCTTCAACATGTCCTGCACCTTGATCGCCCCCTCCTGGCACAGCACCGT
CACCAAGTGGCCCAGCTCCACCACCACCACCATCTCCTCCTTCTGCAACTTGGCCATCTCGTCCG
TCTCCGGAAAATTCCCGTTGATCGCCAGCGACACCGACGTCAAACTCGCCGCCAGCCCGCGCCGC
AGCCCACCCACGCGGCCCCGGTGCTTCTTCTGCATCACCTTACGGGCCAAGAACCCGGGCACCGT
CCGGCGCCGGAAGAACGACTCCAACACCCGGGCCCCCAGCGCCAA



Found at i:51741 original size:42 final size:41

Alignment explanation


    Indices: 51662--51774  Score: 138
    Period size: 42  Copynumber: 2.7  Consensus size: 41

      51652 TGGGTTGAAT

                 *       *                            *
      51662 CTGGGGTGGTAGGAGTCAAA-GTAGGGTCGTTTTGGGTCAACC
          1 CTGGGTTGGTAGGGGTCAAACG-AGGGTCGTTTTGGGTCAA-A

                                                     
      51704 CTGGGTTGGTAGGGGTCAAACGAGGGTCGTTTTGGGTCAAA
          1 CTGGGTTGGTAGGGGTCAAACGAGGGTCGTTTTGGGTCAAA

                   * * *                  
      51745 CTAGGGTCGTTTGGGGTCAAACGAGGGTCG
          1 CT-GGGTTGGTAGGGGTCAAACGAGGGTCG

      51775 CTATGGTCCA


Statistics
Matches: 63,  Mismatches: 6, Indels: 4
        0.86            0.08        0.05

Matches are distributed among these distances:
  41    2  0.03
  42   60  0.95
  43    1  0.02

ACGTcount: A:0.19, C:0.14, G:0.42, T:0.26


Consensus pattern (41 bp):   
CTGGGTTGGTAGGGGTCAAACGAGGGTCGTTTTGGGTCAAA

Left flanking sequence: Indices 51162 -- 51661
CACCGTGCCCAGCGCGATGTCCACCAACTCCGCGCTCATGTTCTTGACCCGCACCACCATCCCCA
CAAACTCCATGGTGACGAGGGTGGGCCGGTTGATCAGGAACGCCAGGTCGGTGATGGGCACCAGC
GGGGCCAGCAGCTGCAGAGCCAGCCGGTGCATCGCGGCAAAGTCGTTCTTGTTGAACCCCTGGGC
CGGGCTCATCGGGGCTACCGGGACCGCAGCCTGGTTGTAGTGCCCCAGGCGCACCGGGAGCTTGC
GGAACTTCCAGTTGTTGTTGACGACCGTGGCCACCAAGAGCTCGGGGTGGGTGCCTACCTGGCAC
ACGATGCGGTCGTTGATGCGGGGGGTGACGAGCTTTTTCGCCAGGAGGAGCTTGAGGTGTTTGGC
GGGGGCCAGGGCCACCAGGGATGACTGGGCGAGGGGGGTGGCGGAGAAATCGGGCGAACCAGGGT
GGTTTTTGGTGGAACCGGGTAAACTAGGGTGCTTTTGGGTTGAAT


Right flanking sequence: Indices 51775 -- 52274
CTATGGTCCAAAACCGGGTCGTTTTCGCTCAAAATAGCACTTTCCGGGGTCAAACCACCGAGTTT
CTGCTCGTTTTGGCCCAAACCAGCACGGTTAGGGCTCAAACCAGCGAGTTTCGACTCGTTTCCAC
CAACTTTCAGCTCATTTCCACCAACTCTCGGCTCATTTCCACCAAGCTTCGGCTCATTTCCTCTC
CCCTCCCCCTCAAACACCTTCAACATGTCCTGCACCTTGATCGCCCCCTCCTGGCACAGCACCGT
CACCAAGTGGCCCAGCTCCACCACCACCACCATCTCCTCCTTCTGCAACTTGGCCATCTCGTCCG
TCTCCGGAAAATTCCCGTTGATCGCCAGCGACACCGACGTCAAACTCGCCGCCAGCCCGCGCCGC
AGCCCACCCACGCGGCCCCGGTGCTTCTTCTGCATCACCTTACGGGCCAAGAACCCGGGCACCGT
CCGGCGCCGGAAGAACGACTCCAACACCCGGGCCCCCAGCGCCAA



Found at i:51786 original size:21 final size:20

Alignment explanation


    Indices: 51716--51774  Score: 91
    Period size: 21  Copynumber: 2.9  Consensus size: 20

      51706 GGGTTGGTAG

                                 
      51716 GGGTCAAACGAGGGTCGTTTT
          1 GGGTCAAACGAGGGTCG-TTT

                     *          
      51737 GGGTCAAACTAGGGTCGTTT
          1 GGGTCAAACGAGGGTCGTTT

                              
      51757 GGGGTCAAACGAGGGTCG
          1 -GGGTCAAACGAGGGTCG

      51775 CTATGGTCCA


Statistics
Matches: 35,  Mismatches: 2, Indels: 2
        0.90            0.05        0.05

Matches are distributed among these distances:
  20    3  0.09
  21   32  0.91

ACGTcount: A:0.20, C:0.15, G:0.41, T:0.24


Consensus pattern (20 bp):   
GGGTCAAACGAGGGTCGTTT

Left flanking sequence: Indices 51216 -- 51715
CACCATCCCCACAAACTCCATGGTGACGAGGGTGGGCCGGTTGATCAGGAACGCCAGGTCGGTGA
TGGGCACCAGCGGGGCCAGCAGCTGCAGAGCCAGCCGGTGCATCGCGGCAAAGTCGTTCTTGTTG
AACCCCTGGGCCGGGCTCATCGGGGCTACCGGGACCGCAGCCTGGTTGTAGTGCCCCAGGCGCAC
CGGGAGCTTGCGGAACTTCCAGTTGTTGTTGACGACCGTGGCCACCAAGAGCTCGGGGTGGGTGC
CTACCTGGCACACGATGCGGTCGTTGATGCGGGGGGTGACGAGCTTTTTCGCCAGGAGGAGCTTG
AGGTGTTTGGCGGGGGCCAGGGCCACCAGGGATGACTGGGCGAGGGGGGTGGCGGAGAAATCGGG
CGAACCAGGGTGGTTTTTGGTGGAACCGGGTAAACTAGGGTGCTTTTGGGTTGAATCTGGGGTGG
TAGGAGTCAAAGTAGGGTCGTTTTGGGTCAACCCTGGGTTGGTAG


Right flanking sequence: Indices 51775 -- 52274
CTATGGTCCAAAACCGGGTCGTTTTCGCTCAAAATAGCACTTTCCGGGGTCAAACCACCGAGTTT
CTGCTCGTTTTGGCCCAAACCAGCACGGTTAGGGCTCAAACCAGCGAGTTTCGACTCGTTTCCAC
CAACTTTCAGCTCATTTCCACCAACTCTCGGCTCATTTCCACCAAGCTTCGGCTCATTTCCTCTC
CCCTCCCCCTCAAACACCTTCAACATGTCCTGCACCTTGATCGCCCCCTCCTGGCACAGCACCGT
CACCAAGTGGCCCAGCTCCACCACCACCACCATCTCCTCCTTCTGCAACTTGGCCATCTCGTCCG
TCTCCGGAAAATTCCCGTTGATCGCCAGCGACACCGACGTCAAACTCGCCGCCAGCCCGCGCCGC
AGCCCACCCACGCGGCCCCGGTGCTTCTTCTGCATCACCTTACGGGCCAAGAACCCGGGCACCGT
CCGGCGCCGGAAGAACGACTCCAACACCCGGGCCCCCAGCGCCAA



Found at i:51912 original size:21 final size:21

Alignment explanation


    Indices: 51888--51965  Score: 88
    Period size: 21  Copynumber: 3.7  Consensus size: 21

      51878 AACCAGCGAG

                     *           
      51888 TTTCGACTCGTTTCCACCAAC
          1 TTTCGACTCATTTCCACCAAC

                                  
      51909 TTTC-AGCTCATTTCCACCAAC
          1 TTTCGA-CTCATTTCCACCAAC

             *   *                
      51930 TCTCGGCTCATTTCCACCAAGC
          1 TTTCGACTCATTTCCACCAA-C

                 *         
      51952 -TTCGGCTCATTTCC
          1 TTTCGACTCATTTCC

      51966 TCTCCCCTCC


Statistics
Matches: 50,  Mismatches: 4, Indels: 6
        0.83            0.07        0.10

Matches are distributed among these distances:
  20    1  0.02
  21   48  0.96
  22    1  0.02

ACGTcount: A:0.18, C:0.38, G:0.10, T:0.33


Consensus pattern (21 bp):   
TTTCGACTCATTTCCACCAAC

Left flanking sequence: Indices 51388 -- 51887
TGGTTGTAGTGCCCCAGGCGCACCGGGAGCTTGCGGAACTTCCAGTTGTTGTTGACGACCGTGGC
CACCAAGAGCTCGGGGTGGGTGCCTACCTGGCACACGATGCGGTCGTTGATGCGGGGGGTGACGA
GCTTTTTCGCCAGGAGGAGCTTGAGGTGTTTGGCGGGGGCCAGGGCCACCAGGGATGACTGGGCG
AGGGGGGTGGCGGAGAAATCGGGCGAACCAGGGTGGTTTTTGGTGGAACCGGGTAAACTAGGGTG
CTTTTGGGTTGAATCTGGGGTGGTAGGAGTCAAAGTAGGGTCGTTTTGGGTCAACCCTGGGTTGG
TAGGGGTCAAACGAGGGTCGTTTTGGGTCAAACTAGGGTCGTTTGGGGTCAAACGAGGGTCGCTA
TGGTCCAAAACCGGGTCGTTTTCGCTCAAAATAGCACTTTCCGGGGTCAAACCACCGAGTTTCTG
CTCGTTTTGGCCCAAACCAGCACGGTTAGGGCTCAAACCAGCGAG


Right flanking sequence: Indices 51966 -- 52465
TCTCCCCTCCCCCTCAAACACCTTCAACATGTCCTGCACCTTGATCGCCCCCTCCTGGCACAGCA
CCGTCACCAAGTGGCCCAGCTCCACCACCACCACCATCTCCTCCTTCTGCAACTTGGCCATCTCG
TCCGTCTCCGGAAAATTCCCGTTGATCGCCAGCGACACCGACGTCAAACTCGCCGCCAGCCCGCG
CCGCAGCCCACCCACGCGGCCCCGGTGCTTCTTCTGCATCACCTTACGGGCCAAGAACCCGGGCA
CCGTCCGGCGCCGGAAGAACGACTCCAACACCCGGGCCCCCAGCGCCAACGGCCCCCGGATTTCT
CCGGGAAGGGGGCTCTCCCACGAGAAACGCAACTGTTTGCGCTCGAAGCACCGCGCCACCCCGGC
ACGGAAGTTGAACAACACCACGTAGTTGCCGTCGTCCAGGATGTTGACGTGGTTGACGGGCCAGA
ACGGCTCCTCGCCCTCCACGGGGGAGATGGTGATGGGGGGGCTGC



Found at i:52811 original size:15 final size:15

Alignment explanation


    Indices: 52791--52820  Score: 51
    Period size: 15  Copynumber: 2.0  Consensus size: 15

      52781 ACGGGGGCGC

                           
      52791 GGAGAGGGAAGAGGA
          1 GGAGAGGGAAGAGGA

                     *     
      52806 GGAGAGGGAGGAGGA
          1 GGAGAGGGAAGAGGA

      52821 ACCTGAGGAA


Statistics
Matches: 14,  Mismatches: 1, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  15   14  1.00

ACGTcount: A:0.37, C:0.00, G:0.63, T:0.00


Consensus pattern (15 bp):   
GGAGAGGGAAGAGGA

Left flanking sequence: Indices 52291 -- 52790
CCGGGAAGGGGGCTCTCCCACGAGAAACGCAACTGTTTGCGCTCGAAGCACCGCGCCACCCCGGC
ACGGAAGTTGAACAACACCACGTAGTTGCCGTCGTCCAGGATGTTGACGTGGTTGACGGGCCAGA
ACGGCTCCTCGCCCTCCACGGGGGAGATGGTGATGGGGGGGCTGCCCGGGCTGAGCGGCAGCCAG
ATACAGATGGTGCGGTCGAGCGAGATGGTGACGATGAACAGCGTGTGGCAGTTGGTTTTGATCAG
GATGATGTCTAGCGTGCCGGGCTTCGTCTCGAGGTCGATGGTGTTGAACTGGCGCTGGGGCTCGA
CAAAGTCGTCGTCGTGGGGCGCGTCGTCGCGGGCCAGGCGCGGGAACGTGAGCCGGAAGATGATG
AGGGCGATGGCCAGCACGAACATCACGATCAGGGCGAGCTCGATGTAGTAGAGCCAGGTGTGCGA
CGACCGGAGCGGGGTCGGGGCGGCGATGCGCACCCACGGGGGCGC


Right flanking sequence: Indices 52821 -- 53320
ACCTGAGGAACCAGAGGAACCAAAGTCAAACTCCCCCACGAGCGCCACCCCGCCCTCGCGCGCCA
ACCGGTGCGGCACCACCACCAACCAGTGCACCATCATCGCCACCACCAACCCGGCCAACGCAGCC
ACACGGAGACCGTCGTGGTCCGCCAGCCCCACCGTGACGAACCACTGGGACCACCCGGGGTTGCG
CCGCGCAAGAAAGCGCAGCACGGGGTTCGCCAGCGCCATCGCGTCCTCGGGCACCGCCTCGTCGT
CGGAGTCGACGGCCACGAGGGGCTCGCCCACGCGGTCGACGGTGCGTTTGACGTCGACGACGATG
GCCGCGGCCATGAAGGTGGCGCCAAGCACAAAGTCCACCACCAGCGCCACCACGAGCGACACGAG
GAGCCGGTCGAGCTTGGCGAGCCCCAGGGCGAGGAGGGTGGCGGGGGCGGCGAACGACGGGTGGA
GAGAGGAGGGGGAAGAGGGGGAGGGGGAAGAGGAAGAAGAGGAGG



Found at i:53300 original size:15 final size:15

Alignment explanation


    Indices: 53280--53308  Score: 58
    Period size: 15  Copynumber: 1.9  Consensus size: 15

      53270 GGTGGAGAGA

                           
      53280 GGAGGGGGAAGAGGG
          1 GGAGGGGGAAGAGGG

                          
      53295 GGAGGGGGAAGAGG
          1 GGAGGGGGAAGAGG

      53309 AAGAAGAGGA


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   14  1.00

ACGTcount: A:0.28, C:0.00, G:0.72, T:0.00


Consensus pattern (15 bp):   
GGAGGGGGAAGAGGG

Left flanking sequence: Indices 52780 -- 53279
CACGGGGGCGCGGAGAGGGAAGAGGAGGAGAGGGAGGAGGAACCTGAGGAACCAGAGGAACCAAA
GTCAAACTCCCCCACGAGCGCCACCCCGCCCTCGCGCGCCAACCGGTGCGGCACCACCACCAACC
AGTGCACCATCATCGCCACCACCAACCCGGCCAACGCAGCCACACGGAGACCGTCGTGGTCCGCC
AGCCCCACCGTGACGAACCACTGGGACCACCCGGGGTTGCGCCGCGCAAGAAAGCGCAGCACGGG
GTTCGCCAGCGCCATCGCGTCCTCGGGCACCGCCTCGTCGTCGGAGTCGACGGCCACGAGGGGCT
CGCCCACGCGGTCGACGGTGCGTTTGACGTCGACGACGATGGCCGCGGCCATGAAGGTGGCGCCA
AGCACAAAGTCCACCACCAGCGCCACCACGAGCGACACGAGGAGCCGGTCGAGCTTGGCGAGCCC
CAGGGCGAGGAGGGTGGCGGGGGCGGCGAACGACGGGTGGAGAGA


Right flanking sequence: Indices 53309 -- 53808
AAGAAGAGGAGGGAATGTCTCCGAGTCCTCCACTCACTCCTCCACTCACTCCTCCACTCACACCA
CCCACACCTCCCACACCACTCAACACCGTCAACACCTTCACCACCGCAAGCGCCGCCGCCAACCG
CGCCACCTGCACCACCACCCGCTTCACAAGCACCCCGGAGCTGTAGTACCGGTACAAGCGCTTGT
GCACCGGGAACAGCTCGGCGTAGTTGTCGGTGAGCAAGCCCACCCCCGCAAAGAACAGCGGCAGC
ATCGCGAGCGTCACCACAAACACGTAGAGCAACATGTTGGCCACCAGCGTCGGCTCGTCGCGGGT
GAGCCCGGCGGCCTCCACCACGTTGATCAGCAGCAGCGCCACCAAGAGCGTCTGGGTGATCCAGC
ACATCATGAGGATCAGGGTGCAGAAGAGCTTGTGCTGGTTGGTGAGGCACAAGTACACATACACA
TGGTAGGCCCCGAGCGCGCACAACACCGCCCACCCGAGCGCCAGC



Found at i:53351 original size:12 final size:12

Alignment explanation


    Indices: 53334--53369  Score: 72
    Period size: 12  Copynumber: 3.0  Consensus size: 12

      53324 TGTCTCCGAG

                        
      53334 TCCTCCACTCAC
          1 TCCTCCACTCAC

                        
      53346 TCCTCCACTCAC
          1 TCCTCCACTCAC

                        
      53358 TCCTCCACTCAC
          1 TCCTCCACTCAC

      53370 ACCACCCACA


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   24  1.00

ACGTcount: A:0.17, C:0.58, G:0.00, T:0.25


Consensus pattern (12 bp):   
TCCTCCACTCAC

Left flanking sequence: Indices 52834 -- 53333
GAGGAACCAAAGTCAAACTCCCCCACGAGCGCCACCCCGCCCTCGCGCGCCAACCGGTGCGGCAC
CACCACCAACCAGTGCACCATCATCGCCACCACCAACCCGGCCAACGCAGCCACACGGAGACCGT
CGTGGTCCGCCAGCCCCACCGTGACGAACCACTGGGACCACCCGGGGTTGCGCCGCGCAAGAAAG
CGCAGCACGGGGTTCGCCAGCGCCATCGCGTCCTCGGGCACCGCCTCGTCGTCGGAGTCGACGGC
CACGAGGGGCTCGCCCACGCGGTCGACGGTGCGTTTGACGTCGACGACGATGGCCGCGGCCATGA
AGGTGGCGCCAAGCACAAAGTCCACCACCAGCGCCACCACGAGCGACACGAGGAGCCGGTCGAGC
TTGGCGAGCCCCAGGGCGAGGAGGGTGGCGGGGGCGGCGAACGACGGGTGGAGAGAGGAGGGGGA
AGAGGGGGAGGGGGAAGAGGAAGAAGAGGAGGGAATGTCTCCGAG


Right flanking sequence: Indices 53370 -- 53869
ACCACCCACACCTCCCACACCACTCAACACCGTCAACACCTTCACCACCGCAAGCGCCGCCGCCA
ACCGCGCCACCTGCACCACCACCCGCTTCACAAGCACCCCGGAGCTGTAGTACCGGTACAAGCGC
TTGTGCACCGGGAACAGCTCGGCGTAGTTGTCGGTGAGCAAGCCCACCCCCGCAAAGAACAGCGG
CAGCATCGCGAGCGTCACCACAAACACGTAGAGCAACATGTTGGCCACCAGCGTCGGCTCGTCGC
GGGTGAGCCCGGCGGCCTCCACCACGTTGATCAGCAGCAGCGCCACCAAGAGCGTCTGGGTGATC
CAGCACATCATGAGGATCAGGGTGCAGAAGAGCTTGTGCTGGTTGGTGAGGCACAAGTACACATA
CACATGGTAGGCCCCGAGCGCGCACAACACCGCCCACCCGAGCGCCAGCGACACCCACGCCGCCG
CGGTGGCGGTGCCGGCCTCGGTGGCGTAGAACCCCACAAACTGGC



Found at i:53384 original size:24 final size:24

Alignment explanation


    Indices: 53334--53384  Score: 59
    Period size: 24  Copynumber: 2.1  Consensus size: 24

      53324 TGTCTCCGAG

                        *  *    *   
      53334 TCCTCCACTCACTCCTCCACTCAC
          1 TCCTCCACTCACACCCCCACACAC

                                     
      53358 TCCTCCACTCACACCACCCACAC-C
          1 TCCTCCACTCACACC-CCCACACAC

               
      53382 TCC
          1 TCC

      53385 CACACCACTC


Statistics
Matches: 23,  Mismatches: 3, Indels: 2
        0.82            0.11        0.07

Matches are distributed among these distances:
  24   18  0.78
  25    5  0.22

ACGTcount: A:0.20, C:0.61, G:0.00, T:0.20


Consensus pattern (24 bp):   
TCCTCCACTCACACCCCCACACAC

Left flanking sequence: Indices 52834 -- 53333
GAGGAACCAAAGTCAAACTCCCCCACGAGCGCCACCCCGCCCTCGCGCGCCAACCGGTGCGGCAC
CACCACCAACCAGTGCACCATCATCGCCACCACCAACCCGGCCAACGCAGCCACACGGAGACCGT
CGTGGTCCGCCAGCCCCACCGTGACGAACCACTGGGACCACCCGGGGTTGCGCCGCGCAAGAAAG
CGCAGCACGGGGTTCGCCAGCGCCATCGCGTCCTCGGGCACCGCCTCGTCGTCGGAGTCGACGGC
CACGAGGGGCTCGCCCACGCGGTCGACGGTGCGTTTGACGTCGACGACGATGGCCGCGGCCATGA
AGGTGGCGCCAAGCACAAAGTCCACCACCAGCGCCACCACGAGCGACACGAGGAGCCGGTCGAGC
TTGGCGAGCCCCAGGGCGAGGAGGGTGGCGGGGGCGGCGAACGACGGGTGGAGAGAGGAGGGGGA
AGAGGGGGAGGGGGAAGAGGAAGAAGAGGAGGGAATGTCTCCGAG


Right flanking sequence: Indices 53385 -- 53884
CACACCACTCAACACCGTCAACACCTTCACCACCGCAAGCGCCGCCGCCAACCGCGCCACCTGCA
CCACCACCCGCTTCACAAGCACCCCGGAGCTGTAGTACCGGTACAAGCGCTTGTGCACCGGGAAC
AGCTCGGCGTAGTTGTCGGTGAGCAAGCCCACCCCCGCAAAGAACAGCGGCAGCATCGCGAGCGT
CACCACAAACACGTAGAGCAACATGTTGGCCACCAGCGTCGGCTCGTCGCGGGTGAGCCCGGCGG
CCTCCACCACGTTGATCAGCAGCAGCGCCACCAAGAGCGTCTGGGTGATCCAGCACATCATGAGG
ATCAGGGTGCAGAAGAGCTTGTGCTGGTTGGTGAGGCACAAGTACACATACACATGGTAGGCCCC
GAGCGCGCACAACACCGCCCACCCGAGCGCCAGCGACACCCACGCCGCCGCGGTGGCGGTGCCGG
CCTCGGTGGCGTAGAACCCCACAAACTGGCGGAGGAGGCCCGGGT



Found at i:56352 original size:14 final size:14

Alignment explanation


    Indices: 56333--56359  Score: 54
    Period size: 14  Copynumber: 1.9  Consensus size: 14

      56323 CGTGGCTGGG

                          
      56333 GCAAACGGCGTTGC
          1 GCAAACGGCGTTGC

                         
      56347 GCAAACGGCGTTG
          1 GCAAACGGCGTTG

      56360 GTTTTGTGTC


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  14   13  1.00

ACGTcount: A:0.22, C:0.26, G:0.37, T:0.15


Consensus pattern (14 bp):   
GCAAACGGCGTTGC

Left flanking sequence: Indices 55833 -- 56332
ACCCTGCGGTAGCCGAAGATGTTCCATATTTTCCGGGGTTTTGACGAGAACCAAGAAAAACGCAA
GGTTGTTGCAGTAGGCGATCGTCCGACGCCCGCACGGCGCCGCGGTGGTCCCGGTGGCGTGTCTG
GCGGGCGCCCCGGCCGGGTGGGTTTATAATTAGCAACTGGTGGTAGCCGTTTCAACCGTTGGGTC
CCGAGCACGCTCCGAAAAGCAGGTGGACCCGACAAGCAGCACTAACCCCGGCAGGGTGGAATTGT
CGGGAGCTGAAGAGGCAGTGCTGGCGGAGCTGACATTGCTGGCGTAATTAGGTTTTATTTCTGGT
TTTTTTTTTGGTTTTTAGGTATTTTGGTTGTTTGGCTTTCGGTCTATCTCGTATCTCGGGTTTAT
CCCGGGACTATCGCGGGCCCAGTTTCACGTCGTTTCAGGCCAATGCCACAGAAGCGACCGCGGGG
TTTGTGGTCGCCGGTGGACTCCGAGCGGCCGGGAACGTGGCTGGG


Right flanking sequence: Indices 56360 -- 56859
GTTTTGTGTCTGGAGGGAGGCAGACACCGGATCGACGGTTAGGTAGACGAGACGAGGCGGAGAAA
AGAGGGTGGGGGAAATTGGTGGGGAAGAGATGGGGAAAAGAAGGAAGCGGGTGGAATGGGGCTAT
GGAGTGGTTGAGAGACGAGTAGTGAGTGCTGAGAGCTGGGTAGTGGTGCTGGGTGGGCTATTGTT
CGGGTGTTCCTGACGCTAGTCTATTGTTGTGGCTCATTGTTACCAGTAGGGCAAGGGTCCCGGGC
ACGGGGGCTTATTAGACTACACAAAGCGTAATTGTAATTAGAGGTTGGAACGGTGGGGAAGCACA
CAAAGCGGAGCATAAAGCGGGGGCTCACAAAGCGGTGGAAGCTCACAAAGCGGTGGAAACGCACA
AAGGTGGGTGGGGGTGTGGAGGGAGAAACGGGTGAACGGGTGAACGGATGGAGCGGATGGAAAGG
GTGGAACGAGTAGAGGGTGGAAAGGGTGGAAGGGTGGTATTTGGG



Found at i:56718 original size:15 final size:17

Alignment explanation


    Indices: 56698--56741  Score: 65
    Period size: 18  Copynumber: 2.6  Consensus size: 17

      56688 AGCGGAGCAT

                             
      56698 AAAGCGG-GG-GCTCAC
          1 AAAGCGGTGGAGCTCAC

                              
      56713 AAAGCGGTGGAAGCTCAC
          1 AAAGCGGTGG-AGCTCAC

                       
      56731 AAAGCGGTGGA
          1 AAAGCGGTGGA

      56742 AACGCACAAA


Statistics
Matches: 26,  Mismatches: 0, Indels: 4
        0.87            0.00        0.13

Matches are distributed among these distances:
  15    7  0.27
  16    2  0.08
  17    1  0.04
  18   16  0.62

ACGTcount: A:0.32, C:0.20, G:0.39, T:0.09


Consensus pattern (17 bp):   
AAAGCGGTGGAGCTCAC

Left flanking sequence: Indices 56198 -- 56697
GGTCTATCTCGTATCTCGGGTTTATCCCGGGACTATCGCGGGCCCAGTTTCACGTCGTTTCAGGC
CAATGCCACAGAAGCGACCGCGGGGTTTGTGGTCGCCGGTGGACTCCGAGCGGCCGGGAACGTGG
CTGGGGCAAACGGCGTTGCGCAAACGGCGTTGGTTTTGTGTCTGGAGGGAGGCAGACACCGGATC
GACGGTTAGGTAGACGAGACGAGGCGGAGAAAAGAGGGTGGGGGAAATTGGTGGGGAAGAGATGG
GGAAAAGAAGGAAGCGGGTGGAATGGGGCTATGGAGTGGTTGAGAGACGAGTAGTGAGTGCTGAG
AGCTGGGTAGTGGTGCTGGGTGGGCTATTGTTCGGGTGTTCCTGACGCTAGTCTATTGTTGTGGC
TCATTGTTACCAGTAGGGCAAGGGTCCCGGGCACGGGGGCTTATTAGACTACACAAAGCGTAATT
GTAATTAGAGGTTGGAACGGTGGGGAAGCACACAAAGCGGAGCAT


Right flanking sequence: Indices 56742 -- 57241
AACGCACAAAGGTGGGTGGGGGTGTGGAGGGAGAAACGGGTGAACGGGTGAACGGATGGAGCGGA
TGGAAAGGGTGGAACGAGTAGAGGGTGGAAAGGGTGGAAGGGTGGTATTTGGGACTGGTGGGTGG
TGTGGATGAGAGCTACGGGTGGCTATGAAGGATTGGCGGCTGGGATTAGCAGAGATTGGCACGAT
TGGCGGTGGCTTGGTGGAGGTGACCCTAGTGGATTTGGTAGATTGTGTGGAATTTTTGAAAAATT
GTGGAAAGGGTACAAAGGACGCCTCTTGCCATGCCGTGGAGCGGCGCGGTGGCTCAGAGATATAG
TGGTTAGAGCCTAAGGCGGATGCTGGTTGGTTGGTGGGGTGAAGGTACGGTTAGGGTTCAATGGG
AAGAATTGAGGTATTGGGAAGGGTGATACAGGAGAATATGTGTAGTCTGGCGATGCTTGGGGTAT
AGGAGCCACATTTGGTGGCATTGGCAGCTTTGGCATTCACAGTGT



Found at i:56730 original size:18 final size:18

Alignment explanation


    Indices: 56707--56752  Score: 74
    Period size: 18  Copynumber: 2.6  Consensus size: 18

      56697 TAAAGCGGGG

                              
      56707 GCTCACAAAGCGGTGGAA
          1 GCTCACAAAGCGGTGGAA

                              
      56725 GCTCACAAAGCGGTGGAA
          1 GCTCACAAAGCGGTGGAA

            * *       
      56743 ACGCACAAAG
          1 GCTCACAAAG

      56753 GTGGGTGGGG


Statistics
Matches: 26,  Mismatches: 2, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  18   26  1.00

ACGTcount: A:0.37, C:0.24, G:0.30, T:0.09


Consensus pattern (18 bp):   
GCTCACAAAGCGGTGGAA

Left flanking sequence: Indices 56207 -- 56706
CGTATCTCGGGTTTATCCCGGGACTATCGCGGGCCCAGTTTCACGTCGTTTCAGGCCAATGCCAC
AGAAGCGACCGCGGGGTTTGTGGTCGCCGGTGGACTCCGAGCGGCCGGGAACGTGGCTGGGGCAA
ACGGCGTTGCGCAAACGGCGTTGGTTTTGTGTCTGGAGGGAGGCAGACACCGGATCGACGGTTAG
GTAGACGAGACGAGGCGGAGAAAAGAGGGTGGGGGAAATTGGTGGGGAAGAGATGGGGAAAAGAA
GGAAGCGGGTGGAATGGGGCTATGGAGTGGTTGAGAGACGAGTAGTGAGTGCTGAGAGCTGGGTA
GTGGTGCTGGGTGGGCTATTGTTCGGGTGTTCCTGACGCTAGTCTATTGTTGTGGCTCATTGTTA
CCAGTAGGGCAAGGGTCCCGGGCACGGGGGCTTATTAGACTACACAAAGCGTAATTGTAATTAGA
GGTTGGAACGGTGGGGAAGCACACAAAGCGGAGCATAAAGCGGGG


Right flanking sequence: Indices 56753 -- 57252
GTGGGTGGGGGTGTGGAGGGAGAAACGGGTGAACGGGTGAACGGATGGAGCGGATGGAAAGGGTG
GAACGAGTAGAGGGTGGAAAGGGTGGAAGGGTGGTATTTGGGACTGGTGGGTGGTGTGGATGAGA
GCTACGGGTGGCTATGAAGGATTGGCGGCTGGGATTAGCAGAGATTGGCACGATTGGCGGTGGCT
TGGTGGAGGTGACCCTAGTGGATTTGGTAGATTGTGTGGAATTTTTGAAAAATTGTGGAAAGGGT
ACAAAGGACGCCTCTTGCCATGCCGTGGAGCGGCGCGGTGGCTCAGAGATATAGTGGTTAGAGCC
TAAGGCGGATGCTGGTTGGTTGGTGGGGTGAAGGTACGGTTAGGGTTCAATGGGAAGAATTGAGG
TATTGGGAAGGGTGATACAGGAGAATATGTGTAGTCTGGCGATGCTTGGGGTATAGGAGCCACAT
TTGGTGGCATTGGCAGCTTTGGCATTCACAGTGTTGGACTTGTTC



Found at i:57826 original size:11 final size:11

Alignment explanation


    Indices: 57806--57849  Score: 70
    Period size: 11  Copynumber: 4.0  Consensus size: 11

      57796 TATGCTCAGA

                       
      57806 GATCTAAGCTC
          1 GATCTAAGCTC

                 *     
      57817 GATCTCAGCTC
          1 GATCTAAGCTC

                      *
      57828 GATCTAAGCTA
          1 GATCTAAGCTC

                       
      57839 GATCTAAGCTC
          1 GATCTAAGCTC

      57850 TGAAACTCCC


Statistics
Matches: 29,  Mismatches: 4, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  11   29  1.00

ACGTcount: A:0.27, C:0.27, G:0.18, T:0.27


Consensus pattern (11 bp):   
GATCTAAGCTC

Left flanking sequence: Indices 57306 -- 57805
AGAAAAGAGCAAAGAGAAAAAGAGCAAACCAGCGACAAGCATAGTTTCTGAAGAGAAAAGCGTTT
TCAAGTGGTTTCCAGCATTATGGAGGGTACCACGAAGCGAGATGTCCTCGGTAGTCCGATGAAGA
TGTCCATTGTGATGGTTGACACACTCTAATCTCATTAAAGTTCCGTTGAGAAGTACAGAACAGAG
TTCCTGTTGGAAGTGTCATTTAATCCGTAACCGTATTTCATACCTTCGATCTGAGTAGAAATCTT
CGACGGCTAAGAATGAGAAGATATCCAACAAGGGGCCAAAGCCGAGTCGCAACATAAGCCTTCAG
CCAAAGTAGAAAAAATTGAGTAGTTGAAACACAACCGATAGACTAATCCTCCGGCAGATCCCACG
TCAGATCCTATGGCTCGATGATCTCCGATTCACGATGGCTGATCTTCCATTCCCTAATCCCCTTG
ATCACCCCCTGTACGCTGATCGTGTTGATCAGTCGTATGCTCAGA


Right flanking sequence: Indices 57850 -- 58349
TGAAACTCCCCACTAAAAAACCATACGTAGTAAATTGAGACCCAAAAAACAATCAAAACCCACTA
TTGAAAACCCGGTGTCCGCGACACCGTGCTGCCGTGGAAGGCTTAGCTATTGATCCCTTGCAGAT
ACGAGTCTCACTTCCGAGCCACTCGTTGTTCACCAAACGAATGGTTTAGATGTACTAAATGAGCT
CAATTGAAAACTCTCAGGCGACCAGAAGCTTAAACACTAATGACCACCAACTACTTGCTACATCA
CCTACTCCATTGTCTCTCATGGCTCATTGTCCCACTTTAACCACACATGACATCTATTGTTTGAT
CAGAAGAAGTTCTTTACGAGCCTTCCCGAACCTTCCCGAACCACTTCAACAACCACTTCTACAAC
ACTTCTACAACACTTCTACAACCACTCCCACTCTAACCACCACCACAAAACAACCAAACCACAAC
CTCAAACACAATTCCAACCACACTCCCTCTCACCACACCACCCCT



Found at i:58228 original size:12 final size:12

Alignment explanation


    Indices: 58213--58265  Score: 83
    Period size: 11  Copynumber: 4.6  Consensus size: 12

      58203 AACCTTCCCG

                     *  
      58213 AACCACTTCAAC
          1 AACCACTTCTAC

                        
      58225 AACCACTTCTAC
          1 AACCACTTCTAC

                        
      58237 AA-CACTTCTAC
          1 AACCACTTCTAC

                        
      58248 AA-CACTTCTAC
          1 AACCACTTCTAC

                   
      58259 AACCACT
          1 AACCACT

      58266 CCCACTCTAA


Statistics
Matches: 39,  Mismatches: 1, Indels: 2
        0.93            0.02        0.05

Matches are distributed among these distances:
  11   22  0.56
  12   17  0.44

ACGTcount: A:0.38, C:0.40, G:0.00, T:0.23


Consensus pattern (12 bp):   
AACCACTTCTAC

Left flanking sequence: Indices 57713 -- 58212
ATGATCTCCGATTCACGATGGCTGATCTTCCATTCCCTAATCCCCTTGATCACCCCCTGTACGCT
GATCGTGTTGATCAGTCGTATGCTCAGAGATCTAAGCTCGATCTCAGCTCGATCTAAGCTAGATC
TAAGCTCTGAAACTCCCCACTAAAAAACCATACGTAGTAAATTGAGACCCAAAAAACAATCAAAA
CCCACTATTGAAAACCCGGTGTCCGCGACACCGTGCTGCCGTGGAAGGCTTAGCTATTGATCCCT
TGCAGATACGAGTCTCACTTCCGAGCCACTCGTTGTTCACCAAACGAATGGTTTAGATGTACTAA
ATGAGCTCAATTGAAAACTCTCAGGCGACCAGAAGCTTAAACACTAATGACCACCAACTACTTGC
TACATCACCTACTCCATTGTCTCTCATGGCTCATTGTCCCACTTTAACCACACATGACATCTATT
GTTTGATCAGAAGAAGTTCTTTACGAGCCTTCCCGAACCTTCCCG


Right flanking sequence: Indices 58266 -- 58765
CCCACTCTAACCACCACCACAAAACAACCAAACCACAACCTCAAACACAATTCCAACCACACTCC
CTCTCACCACACCACCCCTCACTACCCCACCCCTTACCCTACACTCCTCACGTTTAAATCCCCTG
TGACGTTCTTAGTCGTAAGGAAGTCTATTCAACGTTGCCAGCTGGTAGCACCTTCTCCTACCTGG
CTAATTCTACTACATCCTCGATTCCACCACTTCTAATAGCCTTACCACCTATCAATACCCCCCAT
CAGTCTTTCAACACCATTCACACTAATCAACCCCTGATTCAATCACATACACCCTTCTCATACAT
CTTCTCATACATCCCTCATACATCTTCTTCCTATTCTCACATCTTCTCCTATTCTCACATCTTCT
TCCTATTCTCACATCTTCTTCCTATGCTCACATCTTCTCCTATTCTCACATCTTCTCCTATTCTC
ACATCTTCTTCCTATTCTCACATCTTCTTCCTATTCTCACATCTT



Found at i:58596 original size:12 final size:12

Alignment explanation


    Indices: 58579--58618  Score: 64
    Period size: 12  Copynumber: 3.4  Consensus size: 12

      58569 CACATACACC

                        
      58579 CTTCTCATACAT
          1 CTTCTCATACAT

                        
      58591 CTTCTCATACAT
          1 CTTCTCATACAT

              *         
      58603 C-CCTCATACAT
          1 CTTCTCATACAT

                 
      58614 CTTCT
          1 CTTCT

      58619 TCCTATTCTC


Statistics
Matches: 25,  Mismatches: 2, Indels: 2
        0.86            0.07        0.07

Matches are distributed among these distances:
  11   10  0.40
  12   15  0.60

ACGTcount: A:0.23, C:0.38, G:0.00, T:0.40


Consensus pattern (12 bp):   
CTTCTCATACAT

Left flanking sequence: Indices 58079 -- 58578
CACTAATGACCACCAACTACTTGCTACATCACCTACTCCATTGTCTCTCATGGCTCATTGTCCCA
CTTTAACCACACATGACATCTATTGTTTGATCAGAAGAAGTTCTTTACGAGCCTTCCCGAACCTT
CCCGAACCACTTCAACAACCACTTCTACAACACTTCTACAACACTTCTACAACCACTCCCACTCT
AACCACCACCACAAAACAACCAAACCACAACCTCAAACACAATTCCAACCACACTCCCTCTCACC
ACACCACCCCTCACTACCCCACCCCTTACCCTACACTCCTCACGTTTAAATCCCCTGTGACGTTC
TTAGTCGTAAGGAAGTCTATTCAACGTTGCCAGCTGGTAGCACCTTCTCCTACCTGGCTAATTCT
ACTACATCCTCGATTCCACCACTTCTAATAGCCTTACCACCTATCAATACCCCCCATCAGTCTTT
CAACACCATTCACACTAATCAACCCCTGATTCAATCACATACACC


Right flanking sequence: Indices 58619 -- 59118
TCCTATTCTCACATCTTCTCCTATTCTCACATCTTCTTCCTATTCTCACATCTTCTTCCTATGCT
CACATCTTCTCCTATTCTCACATCTTCTCCTATTCTCACATCTTCTTCCTATTCTCACATCTTCT
TCCTATTCTCACATCTTCTTCCTATTCTCACATCTTCTTCCTATTCTCACACCTTCTTCAATTCT
CACATCTCCTTCAATTCTTCTTACATCATCTTCTCTACTTACCCAACGTCGTAATGTTCAACAGG
TTCATCTGCAAGATCAAATCGTCAATCTTCAGGTCCAACTGGCCCTCGGCATACTCGTCCCGCGA
CTGCGGGTCCAAGTGCTGCTGCACCTGGGCCAACCGGGCGTACCCCTCGGTGCAAAACCGCATCT
GGATCTTGACCAACGCCTCGAACGACGGGTCGTAGAACGGGACCCGGAGCGCAATCAACTGCGGG
AGCTCCGCCTTCAACTGCTCGTTCAAGTCGTCGTAGATGTCCTTG



Found at i:58610 original size:11 final size:12

Alignment explanation


    Indices: 58582--58615  Score: 52
    Period size: 11  Copynumber: 2.9  Consensus size: 12

      58572 ATACACCCTT

                       *
      58582 CTCATACATCTT
          1 CTCATACATCTC

                        
      58594 CTCATACATC-C
          1 CTCATACATCTC

                       
      58605 CTCATACATCT
          1 CTCATACATCT

      58616 TCTTCCTATT


Statistics
Matches: 20,  Mismatches: 1, Indels: 2
        0.87            0.04        0.09

Matches are distributed among these distances:
  11   10  0.50
  12   10  0.50

ACGTcount: A:0.26, C:0.38, G:0.00, T:0.35


Consensus pattern (12 bp):   
CTCATACATCTC

Left flanking sequence: Indices 58082 -- 58581
TAATGACCACCAACTACTTGCTACATCACCTACTCCATTGTCTCTCATGGCTCATTGTCCCACTT
TAACCACACATGACATCTATTGTTTGATCAGAAGAAGTTCTTTACGAGCCTTCCCGAACCTTCCC
GAACCACTTCAACAACCACTTCTACAACACTTCTACAACACTTCTACAACCACTCCCACTCTAAC
CACCACCACAAAACAACCAAACCACAACCTCAAACACAATTCCAACCACACTCCCTCTCACCACA
CCACCCCTCACTACCCCACCCCTTACCCTACACTCCTCACGTTTAAATCCCCTGTGACGTTCTTA
GTCGTAAGGAAGTCTATTCAACGTTGCCAGCTGGTAGCACCTTCTCCTACCTGGCTAATTCTACT
ACATCCTCGATTCCACCACTTCTAATAGCCTTACCACCTATCAATACCCCCCATCAGTCTTTCAA
CACCATTCACACTAATCAACCCCTGATTCAATCACATACACCCTT


Right flanking sequence: Indices 58616 -- 59115
TCTTCCTATTCTCACATCTTCTCCTATTCTCACATCTTCTTCCTATTCTCACATCTTCTTCCTAT
GCTCACATCTTCTCCTATTCTCACATCTTCTCCTATTCTCACATCTTCTTCCTATTCTCACATCT
TCTTCCTATTCTCACATCTTCTTCCTATTCTCACATCTTCTTCCTATTCTCACACCTTCTTCAAT
TCTCACATCTCCTTCAATTCTTCTTACATCATCTTCTCTACTTACCCAACGTCGTAATGTTCAAC
AGGTTCATCTGCAAGATCAAATCGTCAATCTTCAGGTCCAACTGGCCCTCGGCATACTCGTCCCG
CGACTGCGGGTCCAAGTGCTGCTGCACCTGGGCCAACCGGGCGTACCCCTCGGTGCAAAACCGCA
TCTGGATCTTGACCAACGCCTCGAACGACGGGTCGTAGAACGGGACCCGGAGCGCAATCAACTGC
GGGAGCTCCGCCTTCAACTGCTCGTTCAAGTCGTCGTAGATGTCC



Found at i:58634 original size:19 final size:19

Alignment explanation


    Indices: 58610--58825  Score: 368
    Period size: 19  Copynumber: 11.6  Consensus size: 19

      58600 CATCCCTCAT

                               
      58610 ACATCTTCTTCCTATTCTC
          1 ACATCTTCTTCCTATTCTC

                               
      58629 ACATCTTC-TCCTATTCTC
          1 ACATCTTCTTCCTATTCTC

                               
      58647 ACATCTTCTTCCTATTCTC
          1 ACATCTTCTTCCTATTCTC

                           *   
      58666 ACATCTTCTTCCTATGCTC
          1 ACATCTTCTTCCTATTCTC

                               
      58685 ACATCTTC-TCCTATTCTC
          1 ACATCTTCTTCCTATTCTC

                               
      58703 ACATCTTC-TCCTATTCTC
          1 ACATCTTCTTCCTATTCTC

                               
      58721 ACATCTTCTTCCTATTCTC
          1 ACATCTTCTTCCTATTCTC

                               
      58740 ACATCTTCTTCCTATTCTC
          1 ACATCTTCTTCCTATTCTC

                               
      58759 ACATCTTCTTCCTATTCTC
          1 ACATCTTCTTCCTATTCTC

                               
      58778 ACATCTTCTTCCTATTCTC
          1 ACATCTTCTTCCTATTCTC

               *        *      
      58797 ACACCTTCTT-CAATTCTC
          1 ACATCTTCTTCCTATTCTC

                  *    
      58815 ACATCTCCTTC
          1 ACATCTTCTTC

      58826 AATTCTTCTT


Statistics
Matches: 188,  Mismatches: 6, Indels: 6
        0.94            0.03        0.03

Matches are distributed among these distances:
  18   68  0.36
  19  120  0.64

ACGTcount: A:0.17, C:0.38, G:0.00, T:0.45


Consensus pattern (19 bp):   
ACATCTTCTTCCTATTCTC

Left flanking sequence: Indices 58110 -- 58609
CCTACTCCATTGTCTCTCATGGCTCATTGTCCCACTTTAACCACACATGACATCTATTGTTTGAT
CAGAAGAAGTTCTTTACGAGCCTTCCCGAACCTTCCCGAACCACTTCAACAACCACTTCTACAAC
ACTTCTACAACACTTCTACAACCACTCCCACTCTAACCACCACCACAAAACAACCAAACCACAAC
CTCAAACACAATTCCAACCACACTCCCTCTCACCACACCACCCCTCACTACCCCACCCCTTACCC
TACACTCCTCACGTTTAAATCCCCTGTGACGTTCTTAGTCGTAAGGAAGTCTATTCAACGTTGCC
AGCTGGTAGCACCTTCTCCTACCTGGCTAATTCTACTACATCCTCGATTCCACCACTTCTAATAG
CCTTACCACCTATCAATACCCCCCATCAGTCTTTCAACACCATTCACACTAATCAACCCCTGATT
CAATCACATACACCCTTCTCATACATCTTCTCATACATCCCTCAT


Right flanking sequence: Indices 58826 -- 59325
AATTCTTCTTACATCATCTTCTCTACTTACCCAACGTCGTAATGTTCAACAGGTTCATCTGCAAG
ATCAAATCGTCAATCTTCAGGTCCAACTGGCCCTCGGCATACTCGTCCCGCGACTGCGGGTCCAA
GTGCTGCTGCACCTGGGCCAACCGGGCGTACCCCTCGGTGCAAAACCGCATCTGGATCTTGACCA
ACGCCTCGAACGACGGGTCGTAGAACGGGACCCGGAGCGCAATCAACTGCGGGAGCTCCGCCTTC
AACTGCTCGTTCAAGTCGTCGTAGATGTCCTTGGCGATCGTCAACTCCTTCTCCGCCGCCGGAAG
CTTGCCCGCGTCCTTGGCGGGCTTGTCGATGAGCTTGCGCACCTTGGCCTTGGCCTGCTCGAGGT
CGGTCTTCTTGTGCTCGCGCTTCTTGATCGCCAGGTCGATCTCGGTGAAGTAGTTGGCGAACTTG
GTGACGGGGTCCAACACCGTCTCGCGGAAGGGGCCGTCGATCTGC



Found at i:58674 original size:56 final size:56

Alignment explanation


    Indices: 58610--58825  Score: 371
    Period size: 56  Copynumber: 3.9  Consensus size: 56

      58600 CATCCCTCAT

                                                                    
      58610 ACATCTTCTTCCTATTCTCACATCTTCTCCTATTCTCACATCTTCTTCCTATTCTC
          1 ACATCTTCTTCCTATTCTCACATCTTCTCCTATTCTCACATCTTCTTCCTATTCTC

                           *                                        
      58666 ACATCTTCTTCCTATGCTCACATCTTCTCCTATTCTCACATCTTC-TCCTATTCTC
          1 ACATCTTCTTCCTATTCTCACATCTTCTCCTATTCTCACATCTTCTTCCTATTCTC

                                                                     
      58721 ACATCTTCTTCCTATTCTCACATCTTCTTCCTATTCTCACATCTTCTTCCTATTCTC
          1 ACATCTTCTTCCTATTCTCACATCTTC-TCCTATTCTCACATCTTCTTCCTATTCTC

                                  *     * *            *    
      58778 ACATCTTCTTCCTATTCTCACACCTTCTTCAATTCTCACATCTCCTTC
          1 ACATCTTCTTCCTATTCTCACATCTTCTCCTATTCTCACATCTTCTTC

      58826 AATTCTTCTT


Statistics
Matches: 152,  Mismatches: 6, Indels: 4
        0.94            0.04        0.02

Matches are distributed among these distances:
  55   36  0.24
  56   80  0.53
  57   36  0.24

ACGTcount: A:0.17, C:0.38, G:0.00, T:0.45


Consensus pattern (56 bp):   
ACATCTTCTTCCTATTCTCACATCTTCTCCTATTCTCACATCTTCTTCCTATTCTC

Left flanking sequence: Indices 58110 -- 58609
CCTACTCCATTGTCTCTCATGGCTCATTGTCCCACTTTAACCACACATGACATCTATTGTTTGAT
CAGAAGAAGTTCTTTACGAGCCTTCCCGAACCTTCCCGAACCACTTCAACAACCACTTCTACAAC
ACTTCTACAACACTTCTACAACCACTCCCACTCTAACCACCACCACAAAACAACCAAACCACAAC
CTCAAACACAATTCCAACCACACTCCCTCTCACCACACCACCCCTCACTACCCCACCCCTTACCC
TACACTCCTCACGTTTAAATCCCCTGTGACGTTCTTAGTCGTAAGGAAGTCTATTCAACGTTGCC
AGCTGGTAGCACCTTCTCCTACCTGGCTAATTCTACTACATCCTCGATTCCACCACTTCTAATAG
CCTTACCACCTATCAATACCCCCCATCAGTCTTTCAACACCATTCACACTAATCAACCCCTGATT
CAATCACATACACCCTTCTCATACATCTTCTCATACATCCCTCAT


Right flanking sequence: Indices 58826 -- 59325
AATTCTTCTTACATCATCTTCTCTACTTACCCAACGTCGTAATGTTCAACAGGTTCATCTGCAAG
ATCAAATCGTCAATCTTCAGGTCCAACTGGCCCTCGGCATACTCGTCCCGCGACTGCGGGTCCAA
GTGCTGCTGCACCTGGGCCAACCGGGCGTACCCCTCGGTGCAAAACCGCATCTGGATCTTGACCA
ACGCCTCGAACGACGGGTCGTAGAACGGGACCCGGAGCGCAATCAACTGCGGGAGCTCCGCCTTC
AACTGCTCGTTCAAGTCGTCGTAGATGTCCTTGGCGATCGTCAACTCCTTCTCCGCCGCCGGAAG
CTTGCCCGCGTCCTTGGCGGGCTTGTCGATGAGCTTGCGCACCTTGGCCTTGGCCTGCTCGAGGT
CGGTCTTCTTGTGCTCGCGCTTCTTGATCGCCAGGTCGATCTCGGTGAAGTAGTTGGCGAACTTG
GTGACGGGGTCCAACACCGTCTCGCGGAAGGGGCCGTCGATCTGC



Found at i:58702 original size:74 final size:75

Alignment explanation


    Indices: 58610--58825  Score: 373
    Period size: 74  Copynumber: 2.9  Consensus size: 75

      58600 CATCCCTCAT

                                                                             
      58610 ACATCTTCTTCCTATTCTCACATCTTCTCCTATTCTCACATCTTCTTCCTATTCTCACATCTTCT
          1 ACATCTTCTTCCTATTCTCACATCTTCTCCTATTCTCACATCTTCTTCCTATTCTCACATCTTCT

                      
      58675 TCCTATGCTC
         66 TCCTATGCTC

                                                                             
      58685 ACATCTTC-TCCTATTCTCACATCTTCTCCTATTCTCACATCTTCTTCCTATTCTCACATCTTCT
          1 ACATCTTCTTCCTATTCTCACATCTTCTCCTATTCTCACATCTTCTTCCTATTCTCACATCTTCT

                  *   
      58749 TCCTATTCTC
         66 TCCTATGCTC

                                                     *        *            * 
      58759 ACATCTTCTTCCTATTCTCACATCTTCTTCCTATTCTCACACCTTCTT-CAATTCTCACATCTCC
          1 ACATCTTCTTCCTATTCTCACATCTTC-TCCTATTCTCACATCTTCTTCCTATTCTCACATCTTC

               
      58823 TTC
         65 TTC

      58826 AATTCTTCTT


Statistics
Matches: 135,  Mismatches: 4, Indels: 4
        0.94            0.03        0.03

Matches are distributed among these distances:
  74   73  0.54
  75   43  0.32
  76   19  0.14

ACGTcount: A:0.17, C:0.38, G:0.00, T:0.45


Consensus pattern (75 bp):   
ACATCTTCTTCCTATTCTCACATCTTCTCCTATTCTCACATCTTCTTCCTATTCTCACATCTTCT
TCCTATGCTC

Left flanking sequence: Indices 58110 -- 58609
CCTACTCCATTGTCTCTCATGGCTCATTGTCCCACTTTAACCACACATGACATCTATTGTTTGAT
CAGAAGAAGTTCTTTACGAGCCTTCCCGAACCTTCCCGAACCACTTCAACAACCACTTCTACAAC
ACTTCTACAACACTTCTACAACCACTCCCACTCTAACCACCACCACAAAACAACCAAACCACAAC
CTCAAACACAATTCCAACCACACTCCCTCTCACCACACCACCCCTCACTACCCCACCCCTTACCC
TACACTCCTCACGTTTAAATCCCCTGTGACGTTCTTAGTCGTAAGGAAGTCTATTCAACGTTGCC
AGCTGGTAGCACCTTCTCCTACCTGGCTAATTCTACTACATCCTCGATTCCACCACTTCTAATAG
CCTTACCACCTATCAATACCCCCCATCAGTCTTTCAACACCATTCACACTAATCAACCCCTGATT
CAATCACATACACCCTTCTCATACATCTTCTCATACATCCCTCAT


Right flanking sequence: Indices 58826 -- 59325
AATTCTTCTTACATCATCTTCTCTACTTACCCAACGTCGTAATGTTCAACAGGTTCATCTGCAAG
ATCAAATCGTCAATCTTCAGGTCCAACTGGCCCTCGGCATACTCGTCCCGCGACTGCGGGTCCAA
GTGCTGCTGCACCTGGGCCAACCGGGCGTACCCCTCGGTGCAAAACCGCATCTGGATCTTGACCA
ACGCCTCGAACGACGGGTCGTAGAACGGGACCCGGAGCGCAATCAACTGCGGGAGCTCCGCCTTC
AACTGCTCGTTCAAGTCGTCGTAGATGTCCTTGGCGATCGTCAACTCCTTCTCCGCCGCCGGAAG
CTTGCCCGCGTCCTTGGCGGGCTTGTCGATGAGCTTGCGCACCTTGGCCTTGGCCTGCTCGAGGT
CGGTCTTCTTGTGCTCGCGCTTCTTGATCGCCAGGTCGATCTCGGTGAAGTAGTTGGCGAACTTG
GTGACGGGGTCCAACACCGTCTCGCGGAAGGGGCCGTCGATCTGC



Found at i:59680 original size:12 final size:13

Alignment explanation


    Indices: 59663--59695  Score: 59
    Period size: 12  Copynumber: 2.6  Consensus size: 13

      59653 GTGAAGGGAA

                         
      59663 GAAAGTGGAGT-G
          1 GAAAGTGGAGTGG

                         
      59675 GAAAGTGGAGTGG
          1 GAAAGTGGAGTGG

                    
      59688 GAAAGTGG
          1 GAAAGTGG

      59696 TAAAGGACTG


Statistics
Matches: 20,  Mismatches: 0, Indels: 1
        0.95            0.00        0.05

Matches are distributed among these distances:
  12   11  0.55
  13    9  0.45

ACGTcount: A:0.33, C:0.00, G:0.52, T:0.15


Consensus pattern (13 bp):   
GAAAGTGGAGTGG

Left flanking sequence: Indices 59163 -- 59662
CTTGGCGGGCTTGTCGATGAGCTTGCGCACCTTGGCCTTGGCCTGCTCGAGGTCGGTCTTCTTGT
GCTCGCGCTTCTTGATCGCCAGGTCGATCTCGGTGAAGTAGTTGGCGAACTTGGTGACGGGGTCC
AACACCGTCTCGCGGAAGGGGCCGTCGATCTGCTTGACGGTCTCCTCGTCAAAGTCCTTGACCGT
CTGGAGGTACACGTTGCCCACCTGCGAGTACTGGGTGCCCTGGGTGCCCTCCTCGTAGAGGTTGG
ACACGATCCCGGCGATGGTGACCTGGGCCGCGGTCACGGCGCGGAGCGCGTCCAAGTAGCCCTTG
GACGCCTTCTGGAGGCCCTGCCCGGCCTTGCGGAGCGTCTGGTACCGCCGCTCCTCGATGTCAAA
GTCCTTGTCCATCGTCTTGTCCACGGCCTTGACCAGCAACTGGCCCCCGGCACGGGTGACGGCCT
TCTTGAACCCGTTCCACGACATGGCGGGGTTCTGAGTGAAGGGAA


Right flanking sequence: Indices 59696 -- 60195
TAAAGGACTGGTTATGGAACCGTCCTGGTGCTAGTGGTGGTGTGAAGAACTGGTCAATGGAACCG
TCCTGGTGTGTGTGGTGTGGTGTGCTGACCTGGTGCTGTTTGGTGACCTGGTGTGCTAGTGGTGT
GCAGTGGTGTGCGGTGGGAGACCTGGTGGTCGGATTACTGGCTACGCCGCAACCGAACGTGCGAA
AACCCGTGACCGGGGTGGGCGGGTCGACGAGCTACGGGGGCGGGTCAATTGGTGGAGAGACGGTG
GAGAGGGGTTTAGACGAGGAAGAGTAGGGGGTGACGCCGGCTATTTATAGACGGGGGGCGCGGGG
GCGGCCTGGGGTGGCGTGTTTGCCGGCCCCCATGCACTGGGGGAACAGGAATGGGGTGTCCTGCA
GGTGGGCAGACTGGAGGAATGGAGTGAGGGCGGTGAGCGCGACTAGCGAGACAGCACCAGGATAG
CACCGAGCCGGCACAGCACAGACACAACAAGGAAGGCAATAAGCT



Found at i:59833 original size:10 final size:10

Alignment explanation


    Indices: 59809--59842  Score: 50
    Period size: 10  Copynumber: 3.3  Consensus size: 10

      59799 TTTGGTGACC

                       
      59809 TGGTGTGCTAG
          1 TGGTGTGC-AG

                      
      59820 TGGTGTGCAG
          1 TGGTGTGCAG

                    * 
      59830 TGGTGTGCGG
          1 TGGTGTGCAG

               
      59840 TGG
          1 TGG

      59843 GAGACCTGGT


Statistics
Matches: 22,  Mismatches: 1, Indels: 1
        0.92            0.04        0.04

Matches are distributed among these distances:
  10   14  0.64
  11    8  0.36

ACGTcount: A:0.06, C:0.09, G:0.53, T:0.32


Consensus pattern (10 bp):   
TGGTGTGCAG

Left flanking sequence: Indices 59309 -- 59808
AGGGGCCGTCGATCTGCTTGACGGTCTCCTCGTCAAAGTCCTTGACCGTCTGGAGGTACACGTTG
CCCACCTGCGAGTACTGGGTGCCCTGGGTGCCCTCCTCGTAGAGGTTGGACACGATCCCGGCGAT
GGTGACCTGGGCCGCGGTCACGGCGCGGAGCGCGTCCAAGTAGCCCTTGGACGCCTTCTGGAGGC
CCTGCCCGGCCTTGCGGAGCGTCTGGTACCGCCGCTCCTCGATGTCAAAGTCCTTGTCCATCGTC
TTGTCCACGGCCTTGACCAGCAACTGGCCCCCGGCACGGGTGACGGCCTTCTTGAACCCGTTCCA
CGACATGGCGGGGTTCTGAGTGAAGGGAAGAAAGTGGAGTGGAAAGTGGAGTGGGAAAGTGGTAA
AGGACTGGTTATGGAACCGTCCTGGTGCTAGTGGTGGTGTGAAGAACTGGTCAATGGAACCGTCC
TGGTGTGTGTGGTGTGGTGTGCTGACCTGGTGCTGTTTGGTGACC


Right flanking sequence: Indices 59843 -- 60342
GAGACCTGGTGGTCGGATTACTGGCTACGCCGCAACCGAACGTGCGAAAACCCGTGACCGGGGTG
GGCGGGTCGACGAGCTACGGGGGCGGGTCAATTGGTGGAGAGACGGTGGAGAGGGGTTTAGACGA
GGAAGAGTAGGGGGTGACGCCGGCTATTTATAGACGGGGGGCGCGGGGGCGGCCTGGGGTGGCGT
GTTTGCCGGCCCCCATGCACTGGGGGAACAGGAATGGGGTGTCCTGCAGGTGGGCAGACTGGAGG
AATGGAGTGAGGGCGGTGAGCGCGACTAGCGAGACAGCACCAGGATAGCACCGAGCCGGCACAGC
ACAGACACAACAAGGAAGGCAATAAGCTACCAAGCTATTAGAAGCTACCAAATCAACACACAAGC
CAGATAAAGCCAGATCAAGACAGAACAAGTCCGATCAAGACAGACCAAGTCAGATCAAGACAGCT
AATAACTCACACTACAAACACACTCCGTCGTCATCCACCATGTCC



Found at i:60256 original size:10 final size:10

Alignment explanation


    Indices: 60228--60295  Score: 64
    Period size: 10  Copynumber: 6.8  Consensus size: 10

      60218 AATCAACACA

                *     
      60228 CAAGCCAGAT
          1 CAAGACAGAT

            *   *     
      60238 AAAGCCAGAT
          1 CAAGACAGAT

                     *
      60248 CAAGACAGAA
          1 CAAGACAGAT

                * *   
      60258 CAAGTCCGAT
          1 CAAGACAGAT

                     *
      60268 CAAGACAGAC
          1 CAAGACAGAT

                *     
      60278 CAAGTCAGAT
          1 CAAGACAGAT

                    
      60288 CAAGACAG
          1 CAAGACAG

      60296 CTAATAACTC


Statistics
Matches: 45,  Mismatches: 13, Indels: 0
        0.78            0.22        0.00

Matches are distributed among these distances:
  10   45  1.00

ACGTcount: A:0.46, C:0.25, G:0.21, T:0.09


Consensus pattern (10 bp):   
CAAGACAGAT

Left flanking sequence: Indices 59728 -- 60227
AGTGGTGGTGTGAAGAACTGGTCAATGGAACCGTCCTGGTGTGTGTGGTGTGGTGTGCTGACCTG
GTGCTGTTTGGTGACCTGGTGTGCTAGTGGTGTGCAGTGGTGTGCGGTGGGAGACCTGGTGGTCG
GATTACTGGCTACGCCGCAACCGAACGTGCGAAAACCCGTGACCGGGGTGGGCGGGTCGACGAGC
TACGGGGGCGGGTCAATTGGTGGAGAGACGGTGGAGAGGGGTTTAGACGAGGAAGAGTAGGGGGT
GACGCCGGCTATTTATAGACGGGGGGCGCGGGGGCGGCCTGGGGTGGCGTGTTTGCCGGCCCCCA
TGCACTGGGGGAACAGGAATGGGGTGTCCTGCAGGTGGGCAGACTGGAGGAATGGAGTGAGGGCG
GTGAGCGCGACTAGCGAGACAGCACCAGGATAGCACCGAGCCGGCACAGCACAGACACAACAAGG
AAGGCAATAAGCTACCAAGCTATTAGAAGCTACCAAATCAACACA


Right flanking sequence: Indices 60296 -- 60795
CTAATAACTCACACTACAAACACACTCCGTCGTCATCCACCATGTCCAAAGAAGCCAAGATCGAC
GAGATCACCGAGCTCAAGGCCAAGATCGCCAGCCTCGTGGCCAACATCCGCGACGCCCGTGCCGT
GTGCACAAAGTACGACCGCGACAACGACTACCTCCAGGACTACGTGGGGTCGGTGATGAAGTCGG
GCGACTTATAGTGGATGAAGGGTGTTGAGAGGCTATAGTTTCTATGGACTACACAGCTATAAGCT
ATTGACTACACCTTAGTCCAAACGGAAATAAGCCATAGGCTATGCTATAGGCTATGCTATAGGCT
CTACCCTTAACCAATGGGCACTGCTGCGAGCCGCCCGCCCCCGGGGCCGCCCCACTGGCGGAGGG
TGTCGCGGGTCACCTGCATGTCGCGCCACTGGCGCGGGTGGTGCACGAGCACCGCCGCGGCGTAG
GCGGAGGCGCCTGCCCACGCGCCGAGCGCCGGCCGGAGGCGCGCC



Found at i:60607 original size:12 final size:12

Alignment explanation


    Indices: 60590--60620  Score: 62
    Period size: 12  Copynumber: 2.6  Consensus size: 12

      60580 GAAATAAGCC

                        
      60590 ATAGGCTATGCT
          1 ATAGGCTATGCT

                        
      60602 ATAGGCTATGCT
          1 ATAGGCTATGCT

                   
      60614 ATAGGCT
          1 ATAGGCT

      60621 CTACCCTTAA


Statistics
Matches: 19,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   19  1.00

ACGTcount: A:0.26, C:0.16, G:0.26, T:0.32


Consensus pattern (12 bp):   
ATAGGCTATGCT

Left flanking sequence: Indices 60090 -- 60589
GGCAGACTGGAGGAATGGAGTGAGGGCGGTGAGCGCGACTAGCGAGACAGCACCAGGATAGCACC
GAGCCGGCACAGCACAGACACAACAAGGAAGGCAATAAGCTACCAAGCTATTAGAAGCTACCAAA
TCAACACACAAGCCAGATAAAGCCAGATCAAGACAGAACAAGTCCGATCAAGACAGACCAAGTCA
GATCAAGACAGCTAATAACTCACACTACAAACACACTCCGTCGTCATCCACCATGTCCAAAGAAG
CCAAGATCGACGAGATCACCGAGCTCAAGGCCAAGATCGCCAGCCTCGTGGCCAACATCCGCGAC
GCCCGTGCCGTGTGCACAAAGTACGACCGCGACAACGACTACCTCCAGGACTACGTGGGGTCGGT
GATGAAGTCGGGCGACTTATAGTGGATGAAGGGTGTTGAGAGGCTATAGTTTCTATGGACTACAC
AGCTATAAGCTATTGACTACACCTTAGTCCAAACGGAAATAAGCC


Right flanking sequence: Indices 60621 -- 61120
CTACCCTTAACCAATGGGCACTGCTGCGAGCCGCCCGCCCCCGGGGCCGCCCCACTGGCGGAGGG
TGTCGCGGGTCACCTGCATGTCGCGCCACTGGCGCGGGTGGTGCACGAGCACCGCCGCGGCGTAG
GCGGAGGCGCCTGCCCACGCGCCGAGCGCCGGCCGGAGGCGCGCCCCGGGCACCCGCGCCACCAC
CCGGGGGCCGAGCGCCGCGAGGTCGCCGGCGACGATGACGGCGCCGGTCACGGGGCGGAGGGTGT
CGATGGGGAGCCGGGCCACCACCAGGTTTATAGCGGTAGCTATGTCAGTACAGAGAGCGTCGACG
CCAGCGTCGGAGTGTAGGGGCAGGGGGGAAGGCAGGGGAGCAGGCAGGGGGGAAGGCAGGGGGAT
TTCTGCGGAGAGAGTGGCGAGGTAGCGGTCGAGGTTGGCTTCGTCAGCGAGGAAGGTGTCCTCGA
GGGGGGAGGTGTGCGTGGGGGAGGTGTTGGGTACCGTAGTGGTGG



Found at i:60981 original size:12 final size:12

Alignment explanation


    Indices: 60964--61008  Score: 72
    Period size: 12  Copynumber: 3.8  Consensus size: 12

      60954 GGAGTGTAGG

                        
      60964 GGCAGGGGGGAA
          1 GGCAGGGGGGAA

                    * * 
      60976 GGCAGGGGAGCA
          1 GGCAGGGGGGAA

                        
      60988 GGCAGGGGGGAA
          1 GGCAGGGGGGAA

                     
      61000 GGCAGGGGG
          1 GGCAGGGGG

      61009 ATTTCTGCGG


Statistics
Matches: 29,  Mismatches: 4, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  12   29  1.00

ACGTcount: A:0.22, C:0.11, G:0.67, T:0.00


Consensus pattern (12 bp):   
GGCAGGGGGGAA

Left flanking sequence: Indices 60464 -- 60963
ACTACGTGGGGTCGGTGATGAAGTCGGGCGACTTATAGTGGATGAAGGGTGTTGAGAGGCTATAG
TTTCTATGGACTACACAGCTATAAGCTATTGACTACACCTTAGTCCAAACGGAAATAAGCCATAG
GCTATGCTATAGGCTATGCTATAGGCTCTACCCTTAACCAATGGGCACTGCTGCGAGCCGCCCGC
CCCCGGGGCCGCCCCACTGGCGGAGGGTGTCGCGGGTCACCTGCATGTCGCGCCACTGGCGCGGG
TGGTGCACGAGCACCGCCGCGGCGTAGGCGGAGGCGCCTGCCCACGCGCCGAGCGCCGGCCGGAG
GCGCGCCCCGGGCACCCGCGCCACCACCCGGGGGCCGAGCGCCGCGAGGTCGCCGGCGACGATGA
CGGCGCCGGTCACGGGGCGGAGGGTGTCGATGGGGAGCCGGGCCACCACCAGGTTTATAGCGGTA
GCTATGTCAGTACAGAGAGCGTCGACGCCAGCGTCGGAGTGTAGG


Right flanking sequence: Indices 61009 -- 61508
ATTTCTGCGGAGAGAGTGGCGAGGTAGCGGTCGAGGTTGGCTTCGTCAGCGAGGAAGGTGTCCTC
GAGGGGGGAGGTGTGCGTGGGGGAGGTGTTGGGTACCGTAGTGGTGGGATCGGTGGTGGGATCAG
TAGTGGTGGGATCAGTAGTGGGATCGGTAGGTGAAGTGGATATAGTGGGTGTGGTAATAGTTGGC
GTGGTAGAGGTTGGTGCGGTAGTTGGCGTGGTAACAGTTGGCGTGGTAACAATTGGTGTCGTAAC
GGTTGGTGTCGTAACAGTCGGATTGCCTGTAGTGGGTGTAACCAGTGTATTAGCTTCATCCGTGG
CCCTCCCCTCCTCCTCACATGTGCGGGCGTAGTGCAACCACTCTCGAGTAGCACTACACCCGCAC
TCCTCACCCGCGATCTCACGGAGGTCCACCACCGCCGCCACCCGGGTGCACCGCCACCCCGTCTC
CACCACAAGCGCCGCGGTGGCGCCCAGCCCCACCGCCACCGCAAG



Found at i:61128 original size:27 final size:27

Alignment explanation


    Indices: 61111--61168  Score: 89
    Period size: 27  Copynumber: 2.1  Consensus size: 27

      61101 GTTGGGTACC

                                       
      61111 GTAGTGGTGGGATCGGTGGTGGGATCA
          1 GTAGTGGTGGGATCGGTGGTGGGATCA

                          *  *        *
      61138 GTAGTGGTGGGATCAGTAGTGGGATCG
          1 GTAGTGGTGGGATCGGTGGTGGGATCA

                
      61165 GTAG
          1 GTAG

      61169 GTGAAGTGGA


Statistics
Matches: 28,  Mismatches: 3, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  27   28  1.00

ACGTcount: A:0.17, C:0.07, G:0.50, T:0.26


Consensus pattern (27 bp):   
GTAGTGGTGGGATCGGTGGTGGGATCA

Left flanking sequence: Indices 60611 -- 61110
GCTATAGGCTCTACCCTTAACCAATGGGCACTGCTGCGAGCCGCCCGCCCCCGGGGCCGCCCCAC
TGGCGGAGGGTGTCGCGGGTCACCTGCATGTCGCGCCACTGGCGCGGGTGGTGCACGAGCACCGC
CGCGGCGTAGGCGGAGGCGCCTGCCCACGCGCCGAGCGCCGGCCGGAGGCGCGCCCCGGGCACCC
GCGCCACCACCCGGGGGCCGAGCGCCGCGAGGTCGCCGGCGACGATGACGGCGCCGGTCACGGGG
CGGAGGGTGTCGATGGGGAGCCGGGCCACCACCAGGTTTATAGCGGTAGCTATGTCAGTACAGAG
AGCGTCGACGCCAGCGTCGGAGTGTAGGGGCAGGGGGGAAGGCAGGGGAGCAGGCAGGGGGGAAG
GCAGGGGGATTTCTGCGGAGAGAGTGGCGAGGTAGCGGTCGAGGTTGGCTTCGTCAGCGAGGAAG
GTGTCCTCGAGGGGGGAGGTGTGCGTGGGGGAGGTGTTGGGTACC


Right flanking sequence: Indices 61169 -- 61668
GTGAAGTGGATATAGTGGGTGTGGTAATAGTTGGCGTGGTAGAGGTTGGTGCGGTAGTTGGCGTG
GTAACAGTTGGCGTGGTAACAATTGGTGTCGTAACGGTTGGTGTCGTAACAGTCGGATTGCCTGT
AGTGGGTGTAACCAGTGTATTAGCTTCATCCGTGGCCCTCCCCTCCTCCTCACATGTGCGGGCGT
AGTGCAACCACTCTCGAGTAGCACTACACCCGCACTCCTCACCCGCGATCTCACGGAGGTCCACC
ACCGCCGCCACCCGGGTGCACCGCCACCCCGTCTCCACCACAAGCGCCGCGGTGGCGCCCAGCCC
CACCGCCACCGCAAGCGCCAGCGGCACCCACGTCACCGACTTCACCCGGAGGTGCACCAACAACG
CGTCGAGAATGGCGAGCTTGGTGGGGTTGGCAAACTGGTGGTCCACCACCACCACCCGGTACTTG
TGTGGCAGCACCATGAGGTGGTGGTAGAAGGTGTCGTACACCGCG



Found at i:61131 original size:12 final size:12

Alignment explanation


    Indices: 61114--61171  Score: 62
    Period size: 12  Copynumber: 4.5  Consensus size: 12

      61104 GGGTACCGTA

                        
      61114 GTGGTGGGATCG
          1 GTGGTGGGATCG

                         
      61126 GTGGTGGGATCAG
          1 GTGGTGGGATC-G

                         *
      61139 TAGTGGTGGGATCA
          1 --GTGGTGGGATCG

              *         
      61153 GTAGTGGGATCG
          1 GTGGTGGGATCG

                   
      61165 GTAGGTG
          1 GT-GGTG

      61172 AAGTGGATAT


Statistics
Matches: 38,  Mismatches: 4, Indels: 7
        0.78            0.08        0.14

Matches are distributed among these distances:
  12   23  0.61
  13    4  0.11
  15   11  0.29

ACGTcount: A:0.16, C:0.07, G:0.52, T:0.26


Consensus pattern (12 bp):   
GTGGTGGGATCG

Left flanking sequence: Indices 60614 -- 61113
ATAGGCTCTACCCTTAACCAATGGGCACTGCTGCGAGCCGCCCGCCCCCGGGGCCGCCCCACTGG
CGGAGGGTGTCGCGGGTCACCTGCATGTCGCGCCACTGGCGCGGGTGGTGCACGAGCACCGCCGC
GGCGTAGGCGGAGGCGCCTGCCCACGCGCCGAGCGCCGGCCGGAGGCGCGCCCCGGGCACCCGCG
CCACCACCCGGGGGCCGAGCGCCGCGAGGTCGCCGGCGACGATGACGGCGCCGGTCACGGGGCGG
AGGGTGTCGATGGGGAGCCGGGCCACCACCAGGTTTATAGCGGTAGCTATGTCAGTACAGAGAGC
GTCGACGCCAGCGTCGGAGTGTAGGGGCAGGGGGGAAGGCAGGGGAGCAGGCAGGGGGGAAGGCA
GGGGGATTTCTGCGGAGAGAGTGGCGAGGTAGCGGTCGAGGTTGGCTTCGTCAGCGAGGAAGGTG
TCCTCGAGGGGGGAGGTGTGCGTGGGGGAGGTGTTGGGTACCGTA


Right flanking sequence: Indices 61172 -- 61671
AAGTGGATATAGTGGGTGTGGTAATAGTTGGCGTGGTAGAGGTTGGTGCGGTAGTTGGCGTGGTA
ACAGTTGGCGTGGTAACAATTGGTGTCGTAACGGTTGGTGTCGTAACAGTCGGATTGCCTGTAGT
GGGTGTAACCAGTGTATTAGCTTCATCCGTGGCCCTCCCCTCCTCCTCACATGTGCGGGCGTAGT
GCAACCACTCTCGAGTAGCACTACACCCGCACTCCTCACCCGCGATCTCACGGAGGTCCACCACC
GCCGCCACCCGGGTGCACCGCCACCCCGTCTCCACCACAAGCGCCGCGGTGGCGCCCAGCCCCAC
CGCCACCGCAAGCGCCAGCGGCACCCACGTCACCGACTTCACCCGGAGGTGCACCAACAACGCGT
CGAGAATGGCGAGCTTGGTGGGGTTGGCAAACTGGTGGTCCACCACCACCACCCGGTACTTGTGT
GGCAGCACCATGAGGTGGTGGTAGAAGGTGTCGTACACCGCGCGC



Found at i:61144 original size:15 final size:15

Alignment explanation


    Indices: 61111--61159  Score: 77
    Period size: 15  Copynumber: 3.5  Consensus size: 15

      61101 GTTGGGTACC

                           
      61111 GTAGTGGTGGGATC-
          1 GTAGTGGTGGGATCA

                           
      61125 G--GTGGTGGGATCA
          1 GTAGTGGTGGGATCA

                           
      61138 GTAGTGGTGGGATCA
          1 GTAGTGGTGGGATCA

                   
      61153 GTAGTGG
          1 GTAGTGG

      61160 GATCGGTAGG


Statistics
Matches: 32,  Mismatches: 0, Indels: 5
        0.86            0.00        0.14

Matches are distributed among these distances:
  12   11  0.34
  13    1  0.03
  14    1  0.03
  15   19  0.59

ACGTcount: A:0.16, C:0.06, G:0.51, T:0.27


Consensus pattern (15 bp):   
GTAGTGGTGGGATCA

Left flanking sequence: Indices 60611 -- 61110
GCTATAGGCTCTACCCTTAACCAATGGGCACTGCTGCGAGCCGCCCGCCCCCGGGGCCGCCCCAC
TGGCGGAGGGTGTCGCGGGTCACCTGCATGTCGCGCCACTGGCGCGGGTGGTGCACGAGCACCGC
CGCGGCGTAGGCGGAGGCGCCTGCCCACGCGCCGAGCGCCGGCCGGAGGCGCGCCCCGGGCACCC
GCGCCACCACCCGGGGGCCGAGCGCCGCGAGGTCGCCGGCGACGATGACGGCGCCGGTCACGGGG
CGGAGGGTGTCGATGGGGAGCCGGGCCACCACCAGGTTTATAGCGGTAGCTATGTCAGTACAGAG
AGCGTCGACGCCAGCGTCGGAGTGTAGGGGCAGGGGGGAAGGCAGGGGAGCAGGCAGGGGGGAAG
GCAGGGGGATTTCTGCGGAGAGAGTGGCGAGGTAGCGGTCGAGGTTGGCTTCGTCAGCGAGGAAG
GTGTCCTCGAGGGGGGAGGTGTGCGTGGGGGAGGTGTTGGGTACC


Right flanking sequence: Indices 61160 -- 61659
GATCGGTAGGTGAAGTGGATATAGTGGGTGTGGTAATAGTTGGCGTGGTAGAGGTTGGTGCGGTA
GTTGGCGTGGTAACAGTTGGCGTGGTAACAATTGGTGTCGTAACGGTTGGTGTCGTAACAGTCGG
ATTGCCTGTAGTGGGTGTAACCAGTGTATTAGCTTCATCCGTGGCCCTCCCCTCCTCCTCACATG
TGCGGGCGTAGTGCAACCACTCTCGAGTAGCACTACACCCGCACTCCTCACCCGCGATCTCACGG
AGGTCCACCACCGCCGCCACCCGGGTGCACCGCCACCCCGTCTCCACCACAAGCGCCGCGGTGGC
GCCCAGCCCCACCGCCACCGCAAGCGCCAGCGGCACCCACGTCACCGACTTCACCCGGAGGTGCA
CCAACAACGCGTCGAGAATGGCGAGCTTGGTGGGGTTGGCAAACTGGTGGTCCACCACCACCACC
CGGTACTTGTGTGGCAGCACCATGAGGTGGTGGTAGAAGGTGTCG



Found at i:61216 original size:15 final size:13

Alignment explanation


    Indices: 61197--61252  Score: 51
    Period size: 15  Copynumber: 4.1  Consensus size: 13

      61187 GTGTGGTAAT

                         
      61197 AGTTGGCGTGGTA
          1 AGTTGGCGTGGTA

                    * *    
      61210 GAGGTTGGTGCGGT-
          1 -A-GTTGGCGTGGTA

                          
      61224 AGTTGGCGTGGTAA
          1 AGTTGGCGTGGT-A

                          
      61238 CAGTTGGCGTGGTA
          1 -AGTTGGCGTGGTA

             
      61252 A
          1 A

      61253 CAATTGGTGT


Statistics
Matches: 34,  Mismatches: 4, Indels: 9
        0.72            0.09        0.19

Matches are distributed among these distances:
  12    9  0.26
  13    2  0.06
  14    2  0.06
  15   21  0.62

ACGTcount: A:0.16, C:0.09, G:0.46, T:0.29


Consensus pattern (13 bp):   
AGTTGGCGTGGTA

Left flanking sequence: Indices 60697 -- 61196
ACCTGCATGTCGCGCCACTGGCGCGGGTGGTGCACGAGCACCGCCGCGGCGTAGGCGGAGGCGCC
TGCCCACGCGCCGAGCGCCGGCCGGAGGCGCGCCCCGGGCACCCGCGCCACCACCCGGGGGCCGA
GCGCCGCGAGGTCGCCGGCGACGATGACGGCGCCGGTCACGGGGCGGAGGGTGTCGATGGGGAGC
CGGGCCACCACCAGGTTTATAGCGGTAGCTATGTCAGTACAGAGAGCGTCGACGCCAGCGTCGGA
GTGTAGGGGCAGGGGGGAAGGCAGGGGAGCAGGCAGGGGGGAAGGCAGGGGGATTTCTGCGGAGA
GAGTGGCGAGGTAGCGGTCGAGGTTGGCTTCGTCAGCGAGGAAGGTGTCCTCGAGGGGGGAGGTG
TGCGTGGGGGAGGTGTTGGGTACCGTAGTGGTGGGATCGGTGGTGGGATCAGTAGTGGTGGGATC
AGTAGTGGGATCGGTAGGTGAAGTGGATATAGTGGGTGTGGTAAT


Right flanking sequence: Indices 61253 -- 61752
CAATTGGTGTCGTAACGGTTGGTGTCGTAACAGTCGGATTGCCTGTAGTGGGTGTAACCAGTGTA
TTAGCTTCATCCGTGGCCCTCCCCTCCTCCTCACATGTGCGGGCGTAGTGCAACCACTCTCGAGT
AGCACTACACCCGCACTCCTCACCCGCGATCTCACGGAGGTCCACCACCGCCGCCACCCGGGTGC
ACCGCCACCCCGTCTCCACCACAAGCGCCGCGGTGGCGCCCAGCCCCACCGCCACCGCAAGCGCC
AGCGGCACCCACGTCACCGACTTCACCCGGAGGTGCACCAACAACGCGTCGAGAATGGCGAGCTT
GGTGGGGTTGGCAAACTGGTGGTCCACCACCACCACCCGGTACTTGTGTGGCAGCACCATGAGGT
GGTGGTAGAAGGTGTCGTACACCGCGCGCCCCACGGCGCCGGGGTCGTCCACGTCGAGCCAGTGG
CGGGTGTCGTCGGGGTAGCGCGCGGCGGCGGCGGCCCACTGGGGG



Found at i:61251 original size:27 final size:27

Alignment explanation


    Indices: 61196--61251  Score: 69
    Period size: 27  Copynumber: 2.1  Consensus size: 27

      61186 GGTGTGGTAA

                            *     *    
      61196 TAGTTGGCGTGGTAGAGGTTGGTGCGG
          1 TAGTTGGCGTGGTAGAAGTTGGCGCGG

                                     *  
      61223 TAGTTGGCGTGGTA-ACAGTTGGCGTGG
          1 TAGTTGGCGTGGTAGA-AGTTGGCGCGG

              
      61250 TA
          1 TA

      61252 ACAATTGGTG


Statistics
Matches: 25,  Mismatches: 3, Indels: 2
        0.83            0.10        0.07

Matches are distributed among these distances:
  26    1  0.04
  27   24  0.96

ACGTcount: A:0.14, C:0.09, G:0.46, T:0.30


Consensus pattern (27 bp):   
TAGTTGGCGTGGTAGAAGTTGGCGCGG

Left flanking sequence: Indices 60696 -- 61195
CACCTGCATGTCGCGCCACTGGCGCGGGTGGTGCACGAGCACCGCCGCGGCGTAGGCGGAGGCGC
CTGCCCACGCGCCGAGCGCCGGCCGGAGGCGCGCCCCGGGCACCCGCGCCACCACCCGGGGGCCG
AGCGCCGCGAGGTCGCCGGCGACGATGACGGCGCCGGTCACGGGGCGGAGGGTGTCGATGGGGAG
CCGGGCCACCACCAGGTTTATAGCGGTAGCTATGTCAGTACAGAGAGCGTCGACGCCAGCGTCGG
AGTGTAGGGGCAGGGGGGAAGGCAGGGGAGCAGGCAGGGGGGAAGGCAGGGGGATTTCTGCGGAG
AGAGTGGCGAGGTAGCGGTCGAGGTTGGCTTCGTCAGCGAGGAAGGTGTCCTCGAGGGGGGAGGT
GTGCGTGGGGGAGGTGTTGGGTACCGTAGTGGTGGGATCGGTGGTGGGATCAGTAGTGGTGGGAT
CAGTAGTGGGATCGGTAGGTGAAGTGGATATAGTGGGTGTGGTAA


Right flanking sequence: Indices 61252 -- 61751
ACAATTGGTGTCGTAACGGTTGGTGTCGTAACAGTCGGATTGCCTGTAGTGGGTGTAACCAGTGT
ATTAGCTTCATCCGTGGCCCTCCCCTCCTCCTCACATGTGCGGGCGTAGTGCAACCACTCTCGAG
TAGCACTACACCCGCACTCCTCACCCGCGATCTCACGGAGGTCCACCACCGCCGCCACCCGGGTG
CACCGCCACCCCGTCTCCACCACAAGCGCCGCGGTGGCGCCCAGCCCCACCGCCACCGCAAGCGC
CAGCGGCACCCACGTCACCGACTTCACCCGGAGGTGCACCAACAACGCGTCGAGAATGGCGAGCT
TGGTGGGGTTGGCAAACTGGTGGTCCACCACCACCACCCGGTACTTGTGTGGCAGCACCATGAGG
TGGTGGTAGAAGGTGTCGTACACCGCGCGCCCCACGGCGCCGGGGTCGTCCACGTCGAGCCAGTG
GCGGGTGTCGTCGGGGTAGCGCGCGGCGGCGGCGGCCCACTGGGG



Found at i:61253 original size:15 final size:15

Alignment explanation


    Indices: 61224--61286  Score: 72
    Period size: 15  Copynumber: 4.2  Consensus size: 15

      61214 TTGGTGCGGT

                     *     
      61224 AGTTGGCGTGGTAAC
          1 AGTTGGCGTCGTAAC

                     *     
      61239 AGTTGGCGTGGTAAC
          1 AGTTGGCGTCGTAAC

             *    *        
      61254 AATTGGTGTCGTAAC
          1 AGTTGGCGTCGTAAC

            *     *        
      61269 GGTTGGTGTCGTAAC
          1 AGTTGGCGTCGTAAC

               
      61284 AGT
          1 AGT

      61287 CGGATTGCCT


Statistics
Matches: 42,  Mismatches: 6, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  15   42  1.00

ACGTcount: A:0.21, C:0.13, G:0.37, T:0.30


Consensus pattern (15 bp):   
AGTTGGCGTCGTAAC

Left flanking sequence: Indices 60724 -- 61223
TGGTGCACGAGCACCGCCGCGGCGTAGGCGGAGGCGCCTGCCCACGCGCCGAGCGCCGGCCGGAG
GCGCGCCCCGGGCACCCGCGCCACCACCCGGGGGCCGAGCGCCGCGAGGTCGCCGGCGACGATGA
CGGCGCCGGTCACGGGGCGGAGGGTGTCGATGGGGAGCCGGGCCACCACCAGGTTTATAGCGGTA
GCTATGTCAGTACAGAGAGCGTCGACGCCAGCGTCGGAGTGTAGGGGCAGGGGGGAAGGCAGGGG
AGCAGGCAGGGGGGAAGGCAGGGGGATTTCTGCGGAGAGAGTGGCGAGGTAGCGGTCGAGGTTGG
CTTCGTCAGCGAGGAAGGTGTCCTCGAGGGGGGAGGTGTGCGTGGGGGAGGTGTTGGGTACCGTA
GTGGTGGGATCGGTGGTGGGATCAGTAGTGGTGGGATCAGTAGTGGGATCGGTAGGTGAAGTGGA
TATAGTGGGTGTGGTAATAGTTGGCGTGGTAGAGGTTGGTGCGGT


Right flanking sequence: Indices 61287 -- 61786
CGGATTGCCTGTAGTGGGTGTAACCAGTGTATTAGCTTCATCCGTGGCCCTCCCCTCCTCCTCAC
ATGTGCGGGCGTAGTGCAACCACTCTCGAGTAGCACTACACCCGCACTCCTCACCCGCGATCTCA
CGGAGGTCCACCACCGCCGCCACCCGGGTGCACCGCCACCCCGTCTCCACCACAAGCGCCGCGGT
GGCGCCCAGCCCCACCGCCACCGCAAGCGCCAGCGGCACCCACGTCACCGACTTCACCCGGAGGT
GCACCAACAACGCGTCGAGAATGGCGAGCTTGGTGGGGTTGGCAAACTGGTGGTCCACCACCACC
ACCCGGTACTTGTGTGGCAGCACCATGAGGTGGTGGTAGAAGGTGTCGTACACCGCGCGCCCCAC
GGCGCCGGGGTCGTCCACGTCGAGCCAGTGGCGGGTGTCGTCGGGGTAGCGCGCGGCGGCGGCGG
CCCACTGGGGGCGGAGGTGTGCGGCGACGGAGTCGCGCTGGGCCG



Found at i:61970 original size:6 final size:6

Alignment explanation


    Indices: 61953--61988  Score: 63
    Period size: 6  Copynumber: 5.8  Consensus size: 6

      61943 GTTTGGTGGT

                                                     
      61953 GGTGTG GTGTGTG GGTGTG GGTGTG GGTGTG GGTGT
          1 GGTGTG G-GTGTG GGTGTG GGTGTG GGTGTG GGTGT

      61989 ATGTGTGGTG


Statistics
Matches: 29,  Mismatches: 0, Indels: 2
        0.94            0.00        0.06

Matches are distributed among these distances:
   6   23  0.79
   7    6  0.21

ACGTcount: A:0.00, C:0.00, G:0.64, T:0.36


Consensus pattern (6 bp):   
GGTGTG

Left flanking sequence: Indices 61453 -- 61952
CACCCCGTCTCCACCACAAGCGCCGCGGTGGCGCCCAGCCCCACCGCCACCGCAAGCGCCAGCGG
CACCCACGTCACCGACTTCACCCGGAGGTGCACCAACAACGCGTCGAGAATGGCGAGCTTGGTGG
GGTTGGCAAACTGGTGGTCCACCACCACCACCCGGTACTTGTGTGGCAGCACCATGAGGTGGTGG
TAGAAGGTGTCGTACACCGCGCGCCCCACGGCGCCGGGGTCGTCCACGTCGAGCCAGTGGCGGGT
GTCGTCGGGGTAGCGCGCGGCGGCGGCGGCCCACTGGGGGCGGAGGTGTGCGGCGACGGAGTCGC
GCTGGGCCGGGGTGAGCAGGGCGTCGTCGAGCCCGAGGAAGGAGGGGGCCCGCGGGGGATGGTGG
GGGCGCCCCCGGTAGCGGGTGGTGGTGGGGAGGGGCGTGCCTGCGACCCCGGCGTTGATGTACCG
GGGGGTGATCTCGAGGATTATCACCTCGGACATGGGTTTGGTGGT


Right flanking sequence: Indices 61989 -- 62488
ATGTGTGGTGCGCGCGGAGGAAGAGTGGAGGGAGACAGGTGGAGTGAGACGAGGTGGAAAGAAAG
AAAAAAGGAGGAAGGAAGAGAAAAGGAGGAGAGAGAGAAGAGGAGGAAGGAAGAGACAAGGAGGA
GAGAAGAGAGGAGAGAAGAGAGGAGAGAAGAGAGGAGAGAAGAGAGGAGAGAAGAGAGAAAAGGG
GGAGGGGAGCGAAAAGAAACACGAGAGGAGAGAGGCGGGGAAGACGAGTAGATTCAGTGAAAGGG
TGAAGGTAAAATGAGCGTGGAAGTTGTTGCAAAACTGAAGATTGCGAGGTATACATCGTTACAAA
TCCCTCTACATCTTGTGTACCATGTGTTTCATATCGAGGCCTACATGCGTTCAATTGATCTGTTT
GATGTGTTGATAGTCCCTTCCTTTGCGTAGAAAACGTAAACTCATACTTTCACTTCAGTCACCCT
CGTTGTTATGCGGCAATTGACTAAGTTTACCATATCCAAGGGCAA



Found at i:61982 original size:18 final size:19

Alignment explanation


    Indices: 61953--61998  Score: 67
    Period size: 18  Copynumber: 2.5  Consensus size: 19

      61943 GTTTGGTGGT

                               
      61953 GGTGTGGTGTGTGGGTGTG
          1 GGTGTGGTGTGTGGGTGTG

                              *
      61972 GGTGTGG-GTGTGGGTGTA
          1 GGTGTGGTGTGTGGGTGTG

            *        
      61990 TGTGTGGTG
          1 GGTGTGGTG

      61999 CGCGCGGAGG


Statistics
Matches: 24,  Mismatches: 2, Indels: 2
        0.86            0.07        0.07

Matches are distributed among these distances:
  18   16  0.67
  19    8  0.33

ACGTcount: A:0.02, C:0.00, G:0.61, T:0.37


Consensus pattern (19 bp):   
GGTGTGGTGTGTGGGTGTG

Left flanking sequence: Indices 61453 -- 61952
CACCCCGTCTCCACCACAAGCGCCGCGGTGGCGCCCAGCCCCACCGCCACCGCAAGCGCCAGCGG
CACCCACGTCACCGACTTCACCCGGAGGTGCACCAACAACGCGTCGAGAATGGCGAGCTTGGTGG
GGTTGGCAAACTGGTGGTCCACCACCACCACCCGGTACTTGTGTGGCAGCACCATGAGGTGGTGG
TAGAAGGTGTCGTACACCGCGCGCCCCACGGCGCCGGGGTCGTCCACGTCGAGCCAGTGGCGGGT
GTCGTCGGGGTAGCGCGCGGCGGCGGCGGCCCACTGGGGGCGGAGGTGTGCGGCGACGGAGTCGC
GCTGGGCCGGGGTGAGCAGGGCGTCGTCGAGCCCGAGGAAGGAGGGGGCCCGCGGGGGATGGTGG
GGGCGCCCCCGGTAGCGGGTGGTGGTGGGGAGGGGCGTGCCTGCGACCCCGGCGTTGATGTACCG
GGGGGTGATCTCGAGGATTATCACCTCGGACATGGGTTTGGTGGT


Right flanking sequence: Indices 61999 -- 62498
CGCGCGGAGGAAGAGTGGAGGGAGACAGGTGGAGTGAGACGAGGTGGAAAGAAAGAAAAAAGGAG
GAAGGAAGAGAAAAGGAGGAGAGAGAGAAGAGGAGGAAGGAAGAGACAAGGAGGAGAGAAGAGAG
GAGAGAAGAGAGGAGAGAAGAGAGGAGAGAAGAGAGGAGAGAAGAGAGAAAAGGGGGAGGGGAGC
GAAAAGAAACACGAGAGGAGAGAGGCGGGGAAGACGAGTAGATTCAGTGAAAGGGTGAAGGTAAA
ATGAGCGTGGAAGTTGTTGCAAAACTGAAGATTGCGAGGTATACATCGTTACAAATCCCTCTACA
TCTTGTGTACCATGTGTTTCATATCGAGGCCTACATGCGTTCAATTGATCTGTTTGATGTGTTGA
TAGTCCCTTCCTTTGCGTAGAAAACGTAAACTCATACTTTCACTTCAGTCACCCTCGTTGTTATG
CGGCAATTGACTAAGTTTACCATATCCAAGGGCAAAAAACGGTCC



Found at i:61994 original size:12 final size:12

Alignment explanation


    Indices: 61953--61996  Score: 52
    Period size: 12  Copynumber: 3.6  Consensus size: 12

      61943 GTTTGGTGGT

                        *
      61953 GGTGTGGTGTGTG
          1 GGTGTGG-GTGTA

                       *
      61966 GGTGTGGGTGTG
          1 GGTGTGGGTGTA

                        
      61978 GGTGTGGGTGTA
          1 GGTGTGGGTGTA

            *      
      61990 TGTGTGG
          1 GGTGTGG

      61997 TGCGCGCGGA


Statistics
Matches: 29,  Mismatches: 2, Indels: 1
        0.91            0.06        0.03

Matches are distributed among these distances:
  12   22  0.76
  13    7  0.24

ACGTcount: A:0.02, C:0.00, G:0.61, T:0.36


Consensus pattern (12 bp):   
GGTGTGGGTGTA

Left flanking sequence: Indices 61453 -- 61952
CACCCCGTCTCCACCACAAGCGCCGCGGTGGCGCCCAGCCCCACCGCCACCGCAAGCGCCAGCGG
CACCCACGTCACCGACTTCACCCGGAGGTGCACCAACAACGCGTCGAGAATGGCGAGCTTGGTGG
GGTTGGCAAACTGGTGGTCCACCACCACCACCCGGTACTTGTGTGGCAGCACCATGAGGTGGTGG
TAGAAGGTGTCGTACACCGCGCGCCCCACGGCGCCGGGGTCGTCCACGTCGAGCCAGTGGCGGGT
GTCGTCGGGGTAGCGCGCGGCGGCGGCGGCCCACTGGGGGCGGAGGTGTGCGGCGACGGAGTCGC
GCTGGGCCGGGGTGAGCAGGGCGTCGTCGAGCCCGAGGAAGGAGGGGGCCCGCGGGGGATGGTGG
GGGCGCCCCCGGTAGCGGGTGGTGGTGGGGAGGGGCGTGCCTGCGACCCCGGCGTTGATGTACCG
GGGGGTGATCTCGAGGATTATCACCTCGGACATGGGTTTGGTGGT


Right flanking sequence: Indices 61997 -- 62496
TGCGCGCGGAGGAAGAGTGGAGGGAGACAGGTGGAGTGAGACGAGGTGGAAAGAAAGAAAAAAGG
AGGAAGGAAGAGAAAAGGAGGAGAGAGAGAAGAGGAGGAAGGAAGAGACAAGGAGGAGAGAAGAG
AGGAGAGAAGAGAGGAGAGAAGAGAGGAGAGAAGAGAGGAGAGAAGAGAGAAAAGGGGGAGGGGA
GCGAAAAGAAACACGAGAGGAGAGAGGCGGGGAAGACGAGTAGATTCAGTGAAAGGGTGAAGGTA
AAATGAGCGTGGAAGTTGTTGCAAAACTGAAGATTGCGAGGTATACATCGTTACAAATCCCTCTA
CATCTTGTGTACCATGTGTTTCATATCGAGGCCTACATGCGTTCAATTGATCTGTTTGATGTGTT
GATAGTCCCTTCCTTTGCGTAGAAAACGTAAACTCATACTTTCACTTCAGTCACCCTCGTTGTTA
TGCGGCAATTGACTAAGTTTACCATATCCAAGGGCAAAAAACGGT



Found at i:62032 original size:14 final size:15

Alignment explanation


    Indices: 62013--62046  Score: 52
    Period size: 14  Copynumber: 2.3  Consensus size: 15

      62003 CGGAGGAAGA

                           
      62013 GTGGAGGGAGAC-AG
          1 GTGGAGGGAGACGAG

                  *        
      62027 GTGGAGTGAGACGAG
          1 GTGGAGGGAGACGAG

                 
      62042 GTGGA
          1 GTGGA

      62047 AAGAAAGAAA


Statistics
Matches: 18,  Mismatches: 1, Indels: 1
        0.90            0.05        0.05

Matches are distributed among these distances:
  14   11  0.61
  15    7  0.39

ACGTcount: A:0.26, C:0.06, G:0.56, T:0.12


Consensus pattern (15 bp):   
GTGGAGGGAGACGAG

Left flanking sequence: Indices 61513 -- 62012
AGCGGCACCCACGTCACCGACTTCACCCGGAGGTGCACCAACAACGCGTCGAGAATGGCGAGCTT
GGTGGGGTTGGCAAACTGGTGGTCCACCACCACCACCCGGTACTTGTGTGGCAGCACCATGAGGT
GGTGGTAGAAGGTGTCGTACACCGCGCGCCCCACGGCGCCGGGGTCGTCCACGTCGAGCCAGTGG
CGGGTGTCGTCGGGGTAGCGCGCGGCGGCGGCGGCCCACTGGGGGCGGAGGTGTGCGGCGACGGA
GTCGCGCTGGGCCGGGGTGAGCAGGGCGTCGTCGAGCCCGAGGAAGGAGGGGGCCCGCGGGGGAT
GGTGGGGGCGCCCCCGGTAGCGGGTGGTGGTGGGGAGGGGCGTGCCTGCGACCCCGGCGTTGATG
TACCGGGGGGTGATCTCGAGGATTATCACCTCGGACATGGGTTTGGTGGTGGTGTGGTGTGTGGG
TGTGGGTGTGGGTGTGGGTGTATGTGTGGTGCGCGCGGAGGAAGA


Right flanking sequence: Indices 62047 -- 62546
AAGAAAGAAAAAAGGAGGAAGGAAGAGAAAAGGAGGAGAGAGAGAAGAGGAGGAAGGAAGAGACA
AGGAGGAGAGAAGAGAGGAGAGAAGAGAGGAGAGAAGAGAGGAGAGAAGAGAGGAGAGAAGAGAG
AAAAGGGGGAGGGGAGCGAAAAGAAACACGAGAGGAGAGAGGCGGGGAAGACGAGTAGATTCAGT
GAAAGGGTGAAGGTAAAATGAGCGTGGAAGTTGTTGCAAAACTGAAGATTGCGAGGTATACATCG
TTACAAATCCCTCTACATCTTGTGTACCATGTGTTTCATATCGAGGCCTACATGCGTTCAATTGA
TCTGTTTGATGTGTTGATAGTCCCTTCCTTTGCGTAGAAAACGTAAACTCATACTTTCACTTCAG
TCACCCTCGTTGTTATGCGGCAATTGACTAAGTTTACCATATCCAAGGGCAAAAAACGGTCCACA
AGCACAATATCCCATTGCAATTTCTCTCTAGTGAACTCAGCTTTC



Found at i:62077 original size:18 final size:17

Alignment explanation


    Indices: 62051--62127  Score: 84
    Period size: 18  Copynumber: 4.4  Consensus size: 17

      62041 GGTGGAAAGA

                *             
      62051 AAGAAAAAAGGAGGAAGG
          1 AAGAGAAAAGGAGG-AGG

                             
      62069 AAGAGAAAAGGAGGA-G
          1 AAGAGAAAAGGAGGAGG

                    *          
      62085 AGAGAGAAGAGGAGGAAGG
          1 A-AGAGAAAAGGAGG-AGG

                  *           
      62104 AAGAGACAAGGAGGAGAG
          1 AAGAGAAAAGGAGGAG-G

                  
      62122 AAGAGA
          1 AAGAGA

      62128 GGAGAGAAGA


Statistics
Matches: 51,  Mismatches: 4, Indels: 8
        0.81            0.06        0.13

Matches are distributed among these distances:
  16    2  0.04
  17   15  0.29
  18   32  0.63
  19    2  0.04

ACGTcount: A:0.55, C:0.01, G:0.44, T:0.00


Consensus pattern (17 bp):   
AAGAGAAAAGGAGGAGG

Left flanking sequence: Indices 61551 -- 62050
CAACAACGCGTCGAGAATGGCGAGCTTGGTGGGGTTGGCAAACTGGTGGTCCACCACCACCACCC
GGTACTTGTGTGGCAGCACCATGAGGTGGTGGTAGAAGGTGTCGTACACCGCGCGCCCCACGGCG
CCGGGGTCGTCCACGTCGAGCCAGTGGCGGGTGTCGTCGGGGTAGCGCGCGGCGGCGGCGGCCCA
CTGGGGGCGGAGGTGTGCGGCGACGGAGTCGCGCTGGGCCGGGGTGAGCAGGGCGTCGTCGAGCC
CGAGGAAGGAGGGGGCCCGCGGGGGATGGTGGGGGCGCCCCCGGTAGCGGGTGGTGGTGGGGAGG
GGCGTGCCTGCGACCCCGGCGTTGATGTACCGGGGGGTGATCTCGAGGATTATCACCTCGGACAT
GGGTTTGGTGGTGGTGTGGTGTGTGGGTGTGGGTGTGGGTGTGGGTGTATGTGTGGTGCGCGCGG
AGGAAGAGTGGAGGGAGACAGGTGGAGTGAGACGAGGTGGAAAGA


Right flanking sequence: Indices 62128 -- 62627
GGAGAGAAGAGAGGAGAGAAGAGAGGAGAGAAGAGAGGAGAGAAGAGAGAAAAGGGGGAGGGGAG
CGAAAAGAAACACGAGAGGAGAGAGGCGGGGAAGACGAGTAGATTCAGTGAAAGGGTGAAGGTAA
AATGAGCGTGGAAGTTGTTGCAAAACTGAAGATTGCGAGGTATACATCGTTACAAATCCCTCTAC
ATCTTGTGTACCATGTGTTTCATATCGAGGCCTACATGCGTTCAATTGATCTGTTTGATGTGTTG
ATAGTCCCTTCCTTTGCGTAGAAAACGTAAACTCATACTTTCACTTCAGTCACCCTCGTTGTTAT
GCGGCAATTGACTAAGTTTACCATATCCAAGGGCAAAAAACGGTCCACAAGCACAATATCCCATT
GCAATTTCTCTCTAGTGAACTCAGCTTTCTCTCGTATCGCACATATCCCGCATGTCGCCAAAACC
CCGCAAACGTATAAAATCAAATCTACGAGCCAAAAAACTTATATA



Found at i:62131 original size:12 final size:12

Alignment explanation


    Indices: 62059--62176  Score: 140
    Period size: 12  Copynumber: 10.2  Consensus size: 12

      62049 GAAAGAAAAA

                        
      62059 AGGAG-GAAG-G
          1 AGGAGAGAAGAG

             *    *     
      62069 AAGAGAAAAG-G
          1 AGGAGAGAAGAG

                          
      62080 AGGAGAGAGAGAAG
          1 AGGAGAGA-AG-AG

                        
      62094 AGGAG-GAAG-G
          1 AGGAGAGAAGAG

             *    *     
      62104 AAGAGACAAG-G
          1 AGGAGAGAAGAG

                        
      62115 AGGAGAGAAGAG
          1 AGGAGAGAAGAG

                        
      62127 AGGAGAGAAGAG
          1 AGGAGAGAAGAG

                        
      62139 AGGAGAGAAGAG
          1 AGGAGAGAAGAG

                        
      62151 AGGAGAGAAGAG
          1 AGGAGAGAAGAG

                        
      62163 AGGAGAGAAGAG
          1 AGGAGAGAAGAG

              
      62175 AG
          1 AG

      62177 AAAAGGGGGA


Statistics
Matches: 94,  Mismatches: 8, Indels: 10
        0.84            0.07        0.09

Matches are distributed among these distances:
  10    9  0.10
  11   22  0.23
  12   55  0.59
  13    2  0.02
  14    6  0.06

ACGTcount: A:0.50, C:0.01, G:0.49, T:0.00


Consensus pattern (12 bp):   
AGGAGAGAAGAG

Left flanking sequence: Indices 61559 -- 62058
CGTCGAGAATGGCGAGCTTGGTGGGGTTGGCAAACTGGTGGTCCACCACCACCACCCGGTACTTG
TGTGGCAGCACCATGAGGTGGTGGTAGAAGGTGTCGTACACCGCGCGCCCCACGGCGCCGGGGTC
GTCCACGTCGAGCCAGTGGCGGGTGTCGTCGGGGTAGCGCGCGGCGGCGGCGGCCCACTGGGGGC
GGAGGTGTGCGGCGACGGAGTCGCGCTGGGCCGGGGTGAGCAGGGCGTCGTCGAGCCCGAGGAAG
GAGGGGGCCCGCGGGGGATGGTGGGGGCGCCCCCGGTAGCGGGTGGTGGTGGGGAGGGGCGTGCC
TGCGACCCCGGCGTTGATGTACCGGGGGGTGATCTCGAGGATTATCACCTCGGACATGGGTTTGG
TGGTGGTGTGGTGTGTGGGTGTGGGTGTGGGTGTGGGTGTATGTGTGGTGCGCGCGGAGGAAGAG
TGGAGGGAGACAGGTGGAGTGAGACGAGGTGGAAAGAAAGAAAAA


Right flanking sequence: Indices 62177 -- 62676
AAAAGGGGGAGGGGAGCGAAAAGAAACACGAGAGGAGAGAGGCGGGGAAGACGAGTAGATTCAGT
GAAAGGGTGAAGGTAAAATGAGCGTGGAAGTTGTTGCAAAACTGAAGATTGCGAGGTATACATCG
TTACAAATCCCTCTACATCTTGTGTACCATGTGTTTCATATCGAGGCCTACATGCGTTCAATTGA
TCTGTTTGATGTGTTGATAGTCCCTTCCTTTGCGTAGAAAACGTAAACTCATACTTTCACTTCAG
TCACCCTCGTTGTTATGCGGCAATTGACTAAGTTTACCATATCCAAGGGCAAAAAACGGTCCACA
AGCACAATATCCCATTGCAATTTCTCTCTAGTGAACTCAGCTTTCTCTCGTATCGCACATATCCC
GCATGTCGCCAAAACCCCGCAAACGTATAAAATCAAATCTACGAGCCAAAAAACTTATATAAGCC
TCACAATGACCACTCCTTGTACCCTGCTGTGCCCCAGAACCTGTG



Found at i:62178 original size:7 final size:7

Alignment explanation


    Indices: 62085--62178  Score: 70
    Period size: 7  Copynumber: 15.1  Consensus size: 7

      62075 AAAGGAGGAG

                   
      62085 AGAGAGA
          1 AGAGAGA

                   
      62092 AGAG-GA
          1 AGAGAGA

            *       
      62098 GGA-AGGA
          1 AGAGA-GA

                 * 
      62105 AGAGACA
          1 AGAGAGA

                   
      62112 AG-GAG-
          1 AGAGAGA

                   
      62117 -GAGAGA
          1 AGAGAGA

                   
      62123 AGAGAG-
          1 AGAGAGA

                   
      62129 -GAGAGA
          1 AGAGAGA

                   
      62135 AGAGAG-
          1 AGAGAGA

                   
      62141 -GAGAGA
          1 AGAGAGA

                   
      62147 AGAGAG-
          1 AGAGAGA

                   
      62153 -GAGAGA
          1 AGAGAGA

                   
      62159 AGAGAG-
          1 AGAGAGA

                   
      62165 -GAGAGA
          1 AGAGAGA

                   
      62171 AGAGAGA
          1 AGAGAGA

             
      62178 A
          1 A

      62179 AAGGGGGAGG


Statistics
Matches: 69,  Mismatches: 4, Indels: 28
        0.68            0.04        0.28

Matches are distributed among these distances:
   4    1  0.01
   5   23  0.33
   6    6  0.09
   7   38  0.55
   8    1  0.01

ACGTcount: A:0.51, C:0.01, G:0.48, T:0.00


Consensus pattern (7 bp):   
AGAGAGA

Left flanking sequence: Indices 61585 -- 62084
TTGGCAAACTGGTGGTCCACCACCACCACCCGGTACTTGTGTGGCAGCACCATGAGGTGGTGGTA
GAAGGTGTCGTACACCGCGCGCCCCACGGCGCCGGGGTCGTCCACGTCGAGCCAGTGGCGGGTGT
CGTCGGGGTAGCGCGCGGCGGCGGCGGCCCACTGGGGGCGGAGGTGTGCGGCGACGGAGTCGCGC
TGGGCCGGGGTGAGCAGGGCGTCGTCGAGCCCGAGGAAGGAGGGGGCCCGCGGGGGATGGTGGGG
GCGCCCCCGGTAGCGGGTGGTGGTGGGGAGGGGCGTGCCTGCGACCCCGGCGTTGATGTACCGGG
GGGTGATCTCGAGGATTATCACCTCGGACATGGGTTTGGTGGTGGTGTGGTGTGTGGGTGTGGGT
GTGGGTGTGGGTGTATGTGTGGTGCGCGCGGAGGAAGAGTGGAGGGAGACAGGTGGAGTGAGACG
AGGTGGAAAGAAAGAAAAAAGGAGGAAGGAAGAGAAAAGGAGGAG


Right flanking sequence: Indices 62179 -- 62678
AAGGGGGAGGGGAGCGAAAAGAAACACGAGAGGAGAGAGGCGGGGAAGACGAGTAGATTCAGTGA
AAGGGTGAAGGTAAAATGAGCGTGGAAGTTGTTGCAAAACTGAAGATTGCGAGGTATACATCGTT
ACAAATCCCTCTACATCTTGTGTACCATGTGTTTCATATCGAGGCCTACATGCGTTCAATTGATC
TGTTTGATGTGTTGATAGTCCCTTCCTTTGCGTAGAAAACGTAAACTCATACTTTCACTTCAGTC
ACCCTCGTTGTTATGCGGCAATTGACTAAGTTTACCATATCCAAGGGCAAAAAACGGTCCACAAG
CACAATATCCCATTGCAATTTCTCTCTAGTGAACTCAGCTTTCTCTCGTATCGCACATATCCCGC
ATGTCGCCAAAACCCCGCAAACGTATAAAATCAAATCTACGAGCCAAAAAACTTATATAAGCCTC
ACAATGACCACTCCTTGTACCCTGCTGTGCCCCAGAACCTGTGCT



Found at i:62915 original size:8 final size:8

Alignment explanation


    Indices: 62902--63040  Score: 59
    Period size: 8  Copynumber: 17.6  Consensus size: 8

      62892 ACTAACACTA

                    
      62902 CCATACTT
          1 CCATACTT

                    
      62910 CCATACTT
          1 CCATACTT

                   *
      62918 CCATAC-A
          1 CCATACTT

                    *
      62925 CCAATACTA
          1 CC-ATACTT

                    
      62934 CCATA--T
          1 CCATACTT

                 * *
      62940 CCATAATA
          1 CCATACTT

              *   * 
      62948 CCGTACAT
          1 CCATACTT

                   *
      62956 CCATACTA
          1 CCATACTT

                * * 
      62964 CCATGCAT
          1 CCATACTT

                  **
      62972 CCATACCA
          1 CCATACTT

                  * 
      62980 CCATACAT
          1 CCATACTT

                  **
      62988 CCATACCA
          1 CCATACTT

                    
      62996 CCATACTT
          1 CCATACTT

              *   **
      63004 CCGTACCA
          1 CCATACTT

             *   *  
      63012 CAATAATT
          1 CCATACTT

                   *
      63020 CCATACTA
          1 CCATACTT

                  * 
      63028 CCATACAT
          1 CCATACTT

                 
      63036 CCATA
          1 CCATA

      63041 TTATCACACT


Statistics
Matches: 92,  Mismatches: 35, Indels: 8
        0.68            0.26        0.06

Matches are distributed among these distances:
   6    5  0.05
   7    2  0.02
   8   82  0.89
   9    3  0.03

ACGTcount: A:0.35, C:0.37, G:0.02, T:0.25


Consensus pattern (8 bp):   
CCATACTT

Left flanking sequence: Indices 62402 -- 62901
TGCGTAGAAAACGTAAACTCATACTTTCACTTCAGTCACCCTCGTTGTTATGCGGCAATTGACTA
AGTTTACCATATCCAAGGGCAAAAAACGGTCCACAAGCACAATATCCCATTGCAATTTCTCTCTA
GTGAACTCAGCTTTCTCTCGTATCGCACATATCCCGCATGTCGCCAAAACCCCGCAAACGTATAA
AATCAAATCTACGAGCCAAAAAACTTATATAAGCCTCACAATGACCACTCCTTGTACCCTGCTGT
GCCCCAGAACCTGTGCTTGTGCGTGCAAGTGCTTGTCGTACCCCTACACCGGCCCCACGTCCTGC
TGTTGTGGTTGCAAAACCCCATGATCTATACGATTCAGAATAAAAGTGGAAGCACCAATAAAGGC
TTTCACTTCTCACCAGGTCTGTGTGTTAGTACCAGCGTGGTTCACACCCAAAACTATACTTCATT
TTCACCACAGGCTGCAAATTGCCCAATGCGGACAGACTAACACTA


Right flanking sequence: Indices 63041 -- 63540
TTATCACACTTCCACACTACCATTTTAAGAAAGGACTTCGTTATTTAAGATATGGAGATAGAAAA
GCGGTTTTAAATGATAATGAACATCTATACATCAATAAGTCCATACTTTCTTACCATTGTACTTC
CATACATCCACACTACCACACTCCCATACTACCACACTCCCATACTACCACACTCCCATACTACC
ATCCTTATACCATTACCTATAAAAGATCCAAGTCCGGATCGTCCACGTCCATCAACTCGGCCGCT
TGCGGCTTGTTCTTCTCGTGGAGCTTCTGGTACTCCAACAACTGCTCGTAGTTCCACACCGACAC
CCCCTCCTGGTCCTTCGGGTTCACCGGCTGCGCCAACGTCCGCAAAAACTTCTTGGCAGTAGCCA
ACGCCACGTCCGTCGACAAGTTAGTGTCCGAATCGTTCAACGCCTGGGCAATCCATTTCGGAAGC
TGGTTCTTTTTCCGGGCAAACCGCCGGTCCGCCAACACCATGATC



Found at i:62923 original size:16 final size:16

Alignment explanation


    Indices: 62898--63063  Score: 142
    Period size: 16  Copynumber: 10.5  Consensus size: 16

      62888 ACAGACTAAC

                      *     
      62898 ACTACCATACTTCCAT
          1 ACTACCATACATCCAT

               *             
      62914 ACTTCCATACA-CCAAT
          1 ACTACCATACATCC-AT

                            
      62930 ACTACCAT--ATCCAT
          1 ACTACCATACATCCAT

             *    *         
      62944 AATACCGTACATCCAT
          1 ACTACCATACATCCAT

                    *       
      62960 ACTACCATGCATCCAT
          1 ACTACCATACATCCAT

              *             
      62976 ACCACCATACATCCAT
          1 ACTACCATACATCCAT

              *       *   * 
      62992 ACCACCATACTTCCGT
          1 ACTACCATACATCCAT

              *  *           
      63008 ACCACAATA-ATTCCAT
          1 ACTACCATACA-TCCAT

                            
      63024 ACTACCATACATCCAT
          1 ACTACCATACATCCAT

             *  *  *  *    *
      63040 ATTATCACACTTCCAC
          1 ACTACCATACATCCAT

                    
      63056 ACTACCAT
          1 ACTACCAT

      63064 TTTAAGAAAG


Statistics
Matches: 119,  Mismatches: 25, Indels: 12
        0.76            0.16        0.08

Matches are distributed among these distances:
  14    9  0.08
  15    4  0.03
  16  105  0.88
  17    1  0.01

ACGTcount: A:0.35, C:0.37, G:0.02, T:0.26


Consensus pattern (16 bp):   
ACTACCATACATCCAT

Left flanking sequence: Indices 62398 -- 62897
CCTTTGCGTAGAAAACGTAAACTCATACTTTCACTTCAGTCACCCTCGTTGTTATGCGGCAATTG
ACTAAGTTTACCATATCCAAGGGCAAAAAACGGTCCACAAGCACAATATCCCATTGCAATTTCTC
TCTAGTGAACTCAGCTTTCTCTCGTATCGCACATATCCCGCATGTCGCCAAAACCCCGCAAACGT
ATAAAATCAAATCTACGAGCCAAAAAACTTATATAAGCCTCACAATGACCACTCCTTGTACCCTG
CTGTGCCCCAGAACCTGTGCTTGTGCGTGCAAGTGCTTGTCGTACCCCTACACCGGCCCCACGTC
CTGCTGTTGTGGTTGCAAAACCCCATGATCTATACGATTCAGAATAAAAGTGGAAGCACCAATAA
AGGCTTTCACTTCTCACCAGGTCTGTGTGTTAGTACCAGCGTGGTTCACACCCAAAACTATACTT
CATTTTCACCACAGGCTGCAAATTGCCCAATGCGGACAGACTAAC


Right flanking sequence: Indices 63064 -- 63563
TTTAAGAAAGGACTTCGTTATTTAAGATATGGAGATAGAAAAGCGGTTTTAAATGATAATGAACA
TCTATACATCAATAAGTCCATACTTTCTTACCATTGTACTTCCATACATCCACACTACCACACTC
CCATACTACCACACTCCCATACTACCACACTCCCATACTACCATCCTTATACCATTACCTATAAA
AGATCCAAGTCCGGATCGTCCACGTCCATCAACTCGGCCGCTTGCGGCTTGTTCTTCTCGTGGAG
CTTCTGGTACTCCAACAACTGCTCGTAGTTCCACACCGACACCCCCTCCTGGTCCTTCGGGTTCA
CCGGCTGCGCCAACGTCCGCAAAAACTTCTTGGCAGTAGCCAACGCCACGTCCGTCGACAAGTTA
GTGTCCGAATCGTTCAACGCCTGGGCAATCCATTTCGGAAGCTGGTTCTTTTTCCGGGCAAACCG
CCGGTCCGCCAACACCATGATCCCGTAGTCGTCCTTGCCGCGGAG



Found at i:62931 original size:24 final size:23

Alignment explanation


    Indices: 62901--63005  Score: 79
    Period size: 24  Copynumber: 4.5  Consensus size: 23

      62891 GACTAACACT

                                   
      62901 ACCATACTTCCATACTTCCATAC
          1 ACCATACTTCCATACTTCCATAC

                     *              *
      62924 ACCAATACTACCATA--TCCATAAT
          1 ACC-ATACTTCCATACTTCCAT-AC

               *   *        *    * 
      62947 ACCGTACATCCATACTACCATGC
          1 ACCATACTTCCATACTTCCATAC

                    **      *        
      62970 ATCCATACCACCATACATCCATACC
          1 A-CCATACTTCCATACTTCCATA-C

                       
      62995 ACCATACTTCC
          1 ACCATACTTCC

      63006 GTACCACAAT


Statistics
Matches: 60,  Mismatches: 16, Indels: 11
        0.69            0.18        0.13

Matches are distributed among these distances:
  22   13  0.22
  23    8  0.13
  24   37  0.62
  25    2  0.03

ACGTcount: A:0.34, C:0.39, G:0.02, T:0.25


Consensus pattern (23 bp):   
ACCATACTTCCATACTTCCATAC

Left flanking sequence: Indices 62401 -- 62900
TTGCGTAGAAAACGTAAACTCATACTTTCACTTCAGTCACCCTCGTTGTTATGCGGCAATTGACT
AAGTTTACCATATCCAAGGGCAAAAAACGGTCCACAAGCACAATATCCCATTGCAATTTCTCTCT
AGTGAACTCAGCTTTCTCTCGTATCGCACATATCCCGCATGTCGCCAAAACCCCGCAAACGTATA
AAATCAAATCTACGAGCCAAAAAACTTATATAAGCCTCACAATGACCACTCCTTGTACCCTGCTG
TGCCCCAGAACCTGTGCTTGTGCGTGCAAGTGCTTGTCGTACCCCTACACCGGCCCCACGTCCTG
CTGTTGTGGTTGCAAAACCCCATGATCTATACGATTCAGAATAAAAGTGGAAGCACCAATAAAGG
CTTTCACTTCTCACCAGGTCTGTGTGTTAGTACCAGCGTGGTTCACACCCAAAACTATACTTCAT
TTTCACCACAGGCTGCAAATTGCCCAATGCGGACAGACTAACACT


Right flanking sequence: Indices 63006 -- 63505
GTACCACAATAATTCCATACTACCATACATCCATATTATCACACTTCCACACTACCATTTTAAGA
AAGGACTTCGTTATTTAAGATATGGAGATAGAAAAGCGGTTTTAAATGATAATGAACATCTATAC
ATCAATAAGTCCATACTTTCTTACCATTGTACTTCCATACATCCACACTACCACACTCCCATACT
ACCACACTCCCATACTACCACACTCCCATACTACCATCCTTATACCATTACCTATAAAAGATCCA
AGTCCGGATCGTCCACGTCCATCAACTCGGCCGCTTGCGGCTTGTTCTTCTCGTGGAGCTTCTGG
TACTCCAACAACTGCTCGTAGTTCCACACCGACACCCCCTCCTGGTCCTTCGGGTTCACCGGCTG
CGCCAACGTCCGCAAAAACTTCTTGGCAGTAGCCAACGCCACGTCCGTCGACAAGTTAGTGTCCG
AATCGTTCAACGCCTGGGCAATCCATTTCGGAAGCTGGTTCTTTT



Found at i:63189 original size:8 final size:8

Alignment explanation


    Indices: 63178--63236  Score: 64
    Period size: 8  Copynumber: 7.4  Consensus size: 8

      63168 TTCCATACAT

                    
      63178 CCACACTA
          1 CCACACTA

                   *
      63186 CCACACTC
          1 CCACACTA

               *    
      63194 CCATACTA
          1 CCACACTA

                   *
      63202 CCACACTC
          1 CCACACTA

               *    
      63210 CCATACTA
          1 CCACACTA

                   *
      63218 CCACACTC
          1 CCACACTA

               *    
      63226 CCATACTA
          1 CCACACTA

               
      63234 CCA
          1 CCA

      63237 TCCTTATACC


Statistics
Matches: 40,  Mismatches: 11, Indels: 0
        0.78            0.22        0.00

Matches are distributed among these distances:
   8   40  1.00

ACGTcount: A:0.32, C:0.51, G:0.00, T:0.17


Consensus pattern (8 bp):   
CCACACTA

Left flanking sequence: Indices 62678 -- 63177
TTGTGCGTGCAAGTGCTTGTCGTACCCCTACACCGGCCCCACGTCCTGCTGTTGTGGTTGCAAAA
CCCCATGATCTATACGATTCAGAATAAAAGTGGAAGCACCAATAAAGGCTTTCACTTCTCACCAG
GTCTGTGTGTTAGTACCAGCGTGGTTCACACCCAAAACTATACTTCATTTTCACCACAGGCTGCA
AATTGCCCAATGCGGACAGACTAACACTACCATACTTCCATACTTCCATACACCAATACTACCAT
ATCCATAATACCGTACATCCATACTACCATGCATCCATACCACCATACATCCATACCACCATACT
TCCGTACCACAATAATTCCATACTACCATACATCCATATTATCACACTTCCACACTACCATTTTA
AGAAAGGACTTCGTTATTTAAGATATGGAGATAGAAAAGCGGTTTTAAATGATAATGAACATCTA
TACATCAATAAGTCCATACTTTCTTACCATTGTACTTCCATACAT


Right flanking sequence: Indices 63237 -- 63736
TCCTTATACCATTACCTATAAAAGATCCAAGTCCGGATCGTCCACGTCCATCAACTCGGCCGCTT
GCGGCTTGTTCTTCTCGTGGAGCTTCTGGTACTCCAACAACTGCTCGTAGTTCCACACCGACACC
CCCTCCTGGTCCTTCGGGTTCACCGGCTGCGCCAACGTCCGCAAAAACTTCTTGGCAGTAGCCAA
CGCCACGTCCGTCGACAAGTTAGTGTCCGAATCGTTCAACGCCTGGGCAATCCATTTCGGAAGCT
GGTTCTTTTTCCGGGCAAACCGCCGGTCCGCCAACACCATGATCCCGTAGTCGTCCTTGCCGCGG
AGAACCCGCCCCAAGCACTGGGCTGCGTGTCGCATGGCATCGAAACTGAGGTAGTCGTTCTCGCG
GATCTGGAAGTGGTCGCGCATAAACTCCAACCGGGCCTTGAGGATCCGCAGCTCGGTGTACTGGA
AGGGAATGCCGATCATGAGCACGGTGCGCCCGTAGTGGTGGTCGA



Found at i:63203 original size:16 final size:16

Alignment explanation


    Indices: 63182--63236  Score: 110
    Period size: 16  Copynumber: 3.4  Consensus size: 16

      63172 ATACATCCAC

                            
      63182 ACTACCACACTCCCAT
          1 ACTACCACACTCCCAT

                            
      63198 ACTACCACACTCCCAT
          1 ACTACCACACTCCCAT

                            
      63214 ACTACCACACTCCCAT
          1 ACTACCACACTCCCAT

                   
      63230 ACTACCA
          1 ACTACCA

      63237 TCCTTATACC


Statistics
Matches: 39,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  16   39  1.00

ACGTcount: A:0.33, C:0.49, G:0.00, T:0.18


Consensus pattern (16 bp):   
ACTACCACACTCCCAT

Left flanking sequence: Indices 62682 -- 63181
GCGTGCAAGTGCTTGTCGTACCCCTACACCGGCCCCACGTCCTGCTGTTGTGGTTGCAAAACCCC
ATGATCTATACGATTCAGAATAAAAGTGGAAGCACCAATAAAGGCTTTCACTTCTCACCAGGTCT
GTGTGTTAGTACCAGCGTGGTTCACACCCAAAACTATACTTCATTTTCACCACAGGCTGCAAATT
GCCCAATGCGGACAGACTAACACTACCATACTTCCATACTTCCATACACCAATACTACCATATCC
ATAATACCGTACATCCATACTACCATGCATCCATACCACCATACATCCATACCACCATACTTCCG
TACCACAATAATTCCATACTACCATACATCCATATTATCACACTTCCACACTACCATTTTAAGAA
AGGACTTCGTTATTTAAGATATGGAGATAGAAAAGCGGTTTTAAATGATAATGAACATCTATACA
TCAATAAGTCCATACTTTCTTACCATTGTACTTCCATACATCCAC


Right flanking sequence: Indices 63237 -- 63736
TCCTTATACCATTACCTATAAAAGATCCAAGTCCGGATCGTCCACGTCCATCAACTCGGCCGCTT
GCGGCTTGTTCTTCTCGTGGAGCTTCTGGTACTCCAACAACTGCTCGTAGTTCCACACCGACACC
CCCTCCTGGTCCTTCGGGTTCACCGGCTGCGCCAACGTCCGCAAAAACTTCTTGGCAGTAGCCAA
CGCCACGTCCGTCGACAAGTTAGTGTCCGAATCGTTCAACGCCTGGGCAATCCATTTCGGAAGCT
GGTTCTTTTTCCGGGCAAACCGCCGGTCCGCCAACACCATGATCCCGTAGTCGTCCTTGCCGCGG
AGAACCCGCCCCAAGCACTGGGCTGCGTGTCGCATGGCATCGAAACTGAGGTAGTCGTTCTCGCG
GATCTGGAAGTGGTCGCGCATAAACTCCAACCGGGCCTTGAGGATCCGCAGCTCGGTGTACTGGA
AGGGAATGCCGATCATGAGCACGGTGCGCCCGTAGTGGTGGTCGA



Found at i:65768 original size:34 final size:35

Alignment explanation


    Indices: 65706--65771  Score: 91
    Period size: 34  Copynumber: 1.9  Consensus size: 35

      65696 ATGAAGTAAA

                                   *           
      65706 GGAAGGAGAGAAGGAAAAAAGGATGAAGGGAAGGG
          1 GGAAGGAGAGAAGGAAAAAAGGAGGAAGGGAAGGG

                             *               
      65741 GGAAGGA-AGAAGG-AAGAAGGAAGGAAGGGAA
          1 GGAAGGAGAGAAGGAAAAAAGG-AGGAAGGGAA

      65772 AGTAAAGGGT


Statistics
Matches: 28,  Mismatches: 2, Indels: 3
        0.85            0.06        0.09

Matches are distributed among these distances:
  33    6  0.21
  34   15  0.54
  35    7  0.25

ACGTcount: A:0.50, C:0.00, G:0.48, T:0.02


Consensus pattern (35 bp):   
GGAAGGAGAGAAGGAAAAAAGGAGGAAGGGAAGGG

Left flanking sequence: Indices 65206 -- 65705
TCCACGGTGTTGCCCTTGCGCTCCTTGGAGATGGTGGGGTGGAGACAGAGGTTTTTTCGCAGGGT
GAGCCCGAGCCCCCGGAACTCTTCCTCGTAGCCGAGCTCGCTGGTGCGGTAGGCCATGAGCTTGT
GGAGCTCGATAAGCGCCTTCTCGATCTCGGACATCGTACGCAGGCAGTAGACGATTTTGCGGTGC
TCGGGGTAGTGCATCTGGTAGGCGACGGTGAGCGAGAGAAGCGACACCGTCTTGCCGGTGCCCGA
GGGCATTTCTAGGATGCAGTTGCCTCCGACGTCGAGGGTCTTTTTGATGTCGGACATGTATGCGT
ACTGCTCCGGGTAGATCCGTGGGTACGGAAAGAGCACGGGGAGGTCGTCAATGAAGAACTTCATG
ACGGGGGTGGGGGGAGATTGGGATGGGGGTTGGGTGGGTGGGGTGGTTGGCGATGGGTTAGTGAT
TGGTAGATCGAGCCGCACGCGAATAAGAAGGGGGGATGAAGTAAA


Right flanking sequence: Indices 65772 -- 66271
AGTAAAGGGTATGAAGGGTGAGAAGAGAGTGGAAGACGGAAAAGAAGGGTGGTGGGGAGTGGTTT
TTAGGGTTATAGGGTGGGAGTGGTTTTATAGTGACTGTGGAGGTTCTAGGCCCAGGGTCTTTGGC
GTAGACAGTGCTGACAAATACGACACGAGGGGAATGTGGAAGTGTGCAGCTGAAGCGGGATTGAC
GAGTCGTATAGATCTGGTTGGGTTGTTTTGGGCAGTGTTGAGAATGCTGTCAATGAACCATCAAA
GGTCATGGAGATGATCCCTTGCGCGAGTGTATAACCTAAAAATAACTAGGCCTAGTTTGATGACT
GGTTGCGAATTAAGGTTATACCTTGTAGTAGCTGCCAAGAACTAATTCGATACCCGCTTCTCTCT
CGATTGTGTGGGTAAGATCTGACTGTGGTATCCAGGCATAATGTAGTCCGTCCGAAACATCACAG
TTGTGACTGCAATCAGTCAATTGACTTAAGAGAATAAAGCTAGCA



Found at i:66841 original size:15 final size:16

Alignment explanation


    Indices: 66795--66845  Score: 72
    Period size: 15  Copynumber: 3.4  Consensus size: 16

      66785 ATCTCATCAT

                            
      66795 CCAT-CTCTTCGCCTA
          1 CCATCCTCTTCGCCTA

             *              
      66810 CAAT-CTCTTCGCCTA
          1 CCATCCTCTTCGCCTA

                            
      66825 CCATCCT-TTCGCCTA
          1 CCATCCTCTTCGCCTA

                  
      66840 CCATCC
          1 CCATCC

      66846 CATGTAGCCA


Statistics
Matches: 33,  Mismatches: 2, Indels: 2
        0.89            0.05        0.05

Matches are distributed among these distances:
  15   31  0.94
  16    2  0.06

ACGTcount: A:0.16, C:0.47, G:0.06, T:0.31


Consensus pattern (16 bp):   
CCATCCTCTTCGCCTA

Left flanking sequence: Indices 66295 -- 66794
AAGCCACGGTCTGGACAAGTTGTTTTCAAGTGGCTCGGTGGCAATGCGTCTATACCATTTCCCTA
AGTACTGACTATCCACCACCATCTACGAGACCCGTAGTCCACAACTGCATTGACTCAAATACCAA
TGCCTAAGAAACGCGTATGACCCACAGCATCTCGTTAACTCTCCACATCCTCGTTTGGTAACACT
CACCCACCGACCCGCATCGTACAATTCGGGTGGTATATGCGTATACCACGCGTACTTTGTTACCC
CTTTGGGACGGCAAAGACACACCTTCAACTATTTAAAAGCCAGTTCGCTCAGAATCCCGTTTTGT
AACCACGGCTCTCCCACCCAGATCTCTGTCCGCATAACGTCTTGCAACCCCACGGGCACGACCCT
TGCAACCACCTGAATGTTCTTCCGCCATTGCATCCATTTGCCTTACCAGTTCTACTACACTTCCC
GTCTGACTCATTCATCTGGATCTCATCGTCTCCTAATCTCATCAT


Right flanking sequence: Indices 66846 -- 67345
CATGTAGCCAAACCCCTAGTTCGTTACTTCTATTCCTCCTAATCCTCTACTCACTCTATTCTCTC
CACCCTATTCTCTCCACCCTACTCTCCACCCTACTTGCTAAATTTATCACGGATCAACGCCGCCA
ACTTCGGGTAGATAATGTCCAGGGTGTTGCCCAGCACCGTGTGCAACACCCCCTTCTGGGCGTAG
TACTGCTTCAACGGAGCCAACTCGCGGTTGTACGTGTCCAACCGCTTCTGGAACACCGCCGCGGT
GTCGTCATCGCGCTTGGTAAGCGGTTCCCCGGTGATATCATCGCGAAACGGGGTCTTGGGCGGGT
TGTAGTCCAAGTTGTACACGCGGCCCAGGTCCACATGCACCCACCGGGCCTCGATCCGCTCGAGG
ATCACGTTCTGGTCCACGTCGAGCTCCACCACCATGTTCAAGTCCTTGTCGCGGGGATGCAACAG
CTCGTCCAACTGGTGGGCCTGGTTCAAGGTGCGGGGGAAGCCATC



Found at i:66920 original size:14 final size:14

Alignment explanation


    Indices: 66901--66943  Score: 72
    Period size: 14  Copynumber: 3.2  Consensus size: 14

      66891 TCTACTCACT

                          
      66901 CTATTCTCTCCACC
          1 CTATTCTCTCCACC

                          
      66915 CTATTCTCTCCACC
          1 CTATTCTCTCCACC

                          
      66929 CTA--CTCTCCACC
          1 CTATTCTCTCCACC

               
      66941 CTA
          1 CTA

      66944 CTTGCTAAAT


Statistics
Matches: 29,  Mismatches: 0, Indels: 2
        0.94            0.00        0.06

Matches are distributed among these distances:
  12   12  0.41
  14   17  0.59

ACGTcount: A:0.16, C:0.51, G:0.00, T:0.33


Consensus pattern (14 bp):   
CTATTCTCTCCACC

Left flanking sequence: Indices 66401 -- 66900
CAACTGCATTGACTCAAATACCAATGCCTAAGAAACGCGTATGACCCACAGCATCTCGTTAACTC
TCCACATCCTCGTTTGGTAACACTCACCCACCGACCCGCATCGTACAATTCGGGTGGTATATGCG
TATACCACGCGTACTTTGTTACCCCTTTGGGACGGCAAAGACACACCTTCAACTATTTAAAAGCC
AGTTCGCTCAGAATCCCGTTTTGTAACCACGGCTCTCCCACCCAGATCTCTGTCCGCATAACGTC
TTGCAACCCCACGGGCACGACCCTTGCAACCACCTGAATGTTCTTCCGCCATTGCATCCATTTGC
CTTACCAGTTCTACTACACTTCCCGTCTGACTCATTCATCTGGATCTCATCGTCTCCTAATCTCA
TCATCCATCTCTTCGCCTACAATCTCTTCGCCTACCATCCTTTCGCCTACCATCCCATGTAGCCA
AACCCCTAGTTCGTTACTTCTATTCCTCCTAATCCTCTACTCACT


Right flanking sequence: Indices 66944 -- 67443
CTTGCTAAATTTATCACGGATCAACGCCGCCAACTTCGGGTAGATAATGTCCAGGGTGTTGCCCA
GCACCGTGTGCAACACCCCCTTCTGGGCGTAGTACTGCTTCAACGGAGCCAACTCGCGGTTGTAC
GTGTCCAACCGCTTCTGGAACACCGCCGCGGTGTCGTCATCGCGCTTGGTAAGCGGTTCCCCGGT
GATATCATCGCGAAACGGGGTCTTGGGCGGGTTGTAGTCCAAGTTGTACACGCGGCCCAGGTCCA
CATGCACCCACCGGGCCTCGATCCGCTCGAGGATCACGTTCTGGTCCACGTCGAGCTCCACCACC
ATGTTCAAGTCCTTGTCGCGGGGATGCAACAGCTCGTCCAACTGGTGGGCCTGGTTCAAGGTGCG
GGGGAAGCCATCGAGCAAGAACAGCGCGCTGGGCGACGACCCCGCCCACCGCGGGTTGAGCAAGT
GGCCCGTGATCAACGCGATCATCGTGCGGTCCGGCACCAACTCCC



Found at i:66935 original size:12 final size:12

Alignment explanation


    Indices: 66906--66945  Score: 62
    Period size: 12  Copynumber: 3.2  Consensus size: 12

      66896 TCACTCTATT

                        
      66906 CTCTCCACCCTA
          1 CTCTCCACCCTA

                          
      66918 TTCTCTCCACCCTA
          1 --CTCTCCACCCTA

                        
      66932 CTCTCCACCCTA
          1 CTCTCCACCCTA

              
      66944 CT
          1 CT

      66946 TGCTAAATTT


Statistics
Matches: 26,  Mismatches: 0, Indels: 2
        0.93            0.00        0.07

Matches are distributed among these distances:
  12   14  0.54
  14   12  0.46

ACGTcount: A:0.15, C:0.55, G:0.00, T:0.30


Consensus pattern (12 bp):   
CTCTCCACCCTA

Left flanking sequence: Indices 66406 -- 66905
GCATTGACTCAAATACCAATGCCTAAGAAACGCGTATGACCCACAGCATCTCGTTAACTCTCCAC
ATCCTCGTTTGGTAACACTCACCCACCGACCCGCATCGTACAATTCGGGTGGTATATGCGTATAC
CACGCGTACTTTGTTACCCCTTTGGGACGGCAAAGACACACCTTCAACTATTTAAAAGCCAGTTC
GCTCAGAATCCCGTTTTGTAACCACGGCTCTCCCACCCAGATCTCTGTCCGCATAACGTCTTGCA
ACCCCACGGGCACGACCCTTGCAACCACCTGAATGTTCTTCCGCCATTGCATCCATTTGCCTTAC
CAGTTCTACTACACTTCCCGTCTGACTCATTCATCTGGATCTCATCGTCTCCTAATCTCATCATC
CATCTCTTCGCCTACAATCTCTTCGCCTACCATCCTTTCGCCTACCATCCCATGTAGCCAAACCC
CTAGTTCGTTACTTCTATTCCTCCTAATCCTCTACTCACTCTATT


Right flanking sequence: Indices 66946 -- 67445
TGCTAAATTTATCACGGATCAACGCCGCCAACTTCGGGTAGATAATGTCCAGGGTGTTGCCCAGC
ACCGTGTGCAACACCCCCTTCTGGGCGTAGTACTGCTTCAACGGAGCCAACTCGCGGTTGTACGT
GTCCAACCGCTTCTGGAACACCGCCGCGGTGTCGTCATCGCGCTTGGTAAGCGGTTCCCCGGTGA
TATCATCGCGAAACGGGGTCTTGGGCGGGTTGTAGTCCAAGTTGTACACGCGGCCCAGGTCCACA
TGCACCCACCGGGCCTCGATCCGCTCGAGGATCACGTTCTGGTCCACGTCGAGCTCCACCACCAT
GTTCAAGTCCTTGTCGCGGGGATGCAACAGCTCGTCCAACTGGTGGGCCTGGTTCAAGGTGCGGG
GGAAGCCATCGAGCAAGAACAGCGCGCTGGGCGACGACCCCGCCCACCGCGGGTTGAGCAAGTGG
CCCGTGATCAACGCGATCATCGTGCGGTCCGGCACCAACTCCCCG



Found at i:67917 original size:20 final size:20

Alignment explanation


    Indices: 67901--67996  Score: 122
    Period size: 20  Copynumber: 4.8  Consensus size: 20

      67891 GGCGTAGAAG

                       *        
      67901 AAGAGAGCAGGGTGTAGACA
          1 AAGAGAGCAGGATGTAGACA

                        *       *
      67921 ACA-AGAGCAGGGTGTAGACG
          1 A-AGAGAGCAGGATGTAGACA

                                
      67941 AAGAGAGCAGGATGTAGACA
          1 AAGAGAGCAGGATGTAGACA

                               *
      67961 AAGAGAGCAGGATGTAGACG
          1 AAGAGAGCAGGATGTAGACA

            *      *        
      67981 TAGAGAGTAGGATGTA
          1 AAGAGAGCAGGATGTA

      67997 AGTAAATTCG


Statistics
Matches: 68,  Mismatches: 6, Indels: 4
        0.87            0.08        0.05

Matches are distributed among these distances:
  19    1  0.01
  20   66  0.97
  21    1  0.01

ACGTcount: A:0.40, C:0.09, G:0.39, T:0.12


Consensus pattern (20 bp):   
AAGAGAGCAGGATGTAGACA

Left flanking sequence: Indices 67401 -- 67900
CCCGTGATCAACGCGATCATCGTGCGGTCCGGCACCAACTCCCCGTTTTGGATATACTGGGCGGC
CTCGCGGCCAATCGCCGAGTGCTCGGCCATCTCGTGGCGCAAAATGTCCCCCAGCAGCACGGGGT
TGATCAGGGGGAACTCCTTGAGGAGCCGCAGCGTCTGGGTGCCCTTGCCCGAGCCCGGAGCGCCC
AAGAGAAGGAGACGGAGGGGGCGCACAAGTGACATGGACCGGTGGGCATGTGTCGCGATTTTTCA
ACGAGGTTGCTAACTCCGGTCCGCTGGTCCGAGGGGGTTGGGTGGGTGTTACAAAGGGGATCAAA
GTGAAGGAAATAGAGAGTTTGGGAAGTTGGCGGGGCGGCAGATGGCCCGTTTCTTTTGGCGCCCC
CGTGCATTCGGATCGGTTGGCGAGATCGCGTCGGCCGTAACGAGCTGTCACAAAGGGGTGGGGAT
GCGAGGCGTGGCTGAGAAGTCTGGTAGATGAGCGAGGCGTAGAAG


Right flanking sequence: Indices 67997 -- 68496
AGTAAATTCGGATGGTGGTGTGTCTGTATCGGAAGAACGAGACCGTGGACGGGCTAGTATGTGCA
TTGGCTATTCGATACTACTTTTGGACATGCGATAATCAAAACGCTATTGACGGATGATCAGGCTT
GGAATTGTTGATCCTGCAATGCTGAACACGTAGATAAGCTGGTCTAGTTTGACATCCTAAAAGTT
TAATCCACTTCAAGAGCGATTTGACCCTCTTTGAAGTGAGGTCTTCGCAGGCGTAGGGTTGGATC
AACTCCAATGCTGATTCAAACCTTAGCGAATCCACTGTTTCCCGAGACGTTTCCAACAATCAACC
TCGATAGCATGAACACGCCAGAGTGGTCGTCTGGTTCGAAGTCTACACAGCGACTGCTTTTGATC
GCTAAAACCTGTTATCAGCCTTGTTGATGCCTATTCTACCAACTAAAGGCTTTGGTTGCCTTGAT
TCTAGCAAGAATCCATCTCACGTCAAATTGAAGATAAACGATGGT



Found at i:67949 original size:40 final size:40

Alignment explanation


    Indices: 67894--67996  Score: 145
    Period size: 40  Copynumber: 2.6  Consensus size: 40

      67884 TGAGCGAGGC

                 *            *                    * 
      67894 GTAGAAGAAGAGAGCAGGGTGTAGACAACA-AGAGCAGGGT
          1 GTAGACGAAGAGAGCAGGATGTAGACAA-AGAGAGCAGGAT

                                                    
      67934 GTAGACGAAGAGAGCAGGATGTAGACAAAGAGAGCAGGAT
          1 GTAGACGAAGAGAGCAGGATGTAGACAAAGAGAGCAGGAT

                   *      *        
      67974 GTAGACGTAGAGAGTAGGATGTA
          1 GTAGACGAAGAGAGCAGGATGTA

      67997 AGTAAATTCG


Statistics
Matches: 57,  Mismatches: 5, Indels: 2
        0.89            0.08        0.03

Matches are distributed among these distances:
  39    1  0.02
  40   56  0.98

ACGTcount: A:0.40, C:0.09, G:0.39, T:0.13


Consensus pattern (40 bp):   
GTAGACGAAGAGAGCAGGATGTAGACAAAGAGAGCAGGAT

Left flanking sequence: Indices 67394 -- 67893
CAAGTGGCCCGTGATCAACGCGATCATCGTGCGGTCCGGCACCAACTCCCCGTTTTGGATATACT
GGGCGGCCTCGCGGCCAATCGCCGAGTGCTCGGCCATCTCGTGGCGCAAAATGTCCCCCAGCAGC
ACGGGGTTGATCAGGGGGAACTCCTTGAGGAGCCGCAGCGTCTGGGTGCCCTTGCCCGAGCCCGG
AGCGCCCAAGAGAAGGAGACGGAGGGGGCGCACAAGTGACATGGACCGGTGGGCATGTGTCGCGA
TTTTTCAACGAGGTTGCTAACTCCGGTCCGCTGGTCCGAGGGGGTTGGGTGGGTGTTACAAAGGG
GATCAAAGTGAAGGAAATAGAGAGTTTGGGAAGTTGGCGGGGCGGCAGATGGCCCGTTTCTTTTG
GCGCCCCCGTGCATTCGGATCGGTTGGCGAGATCGCGTCGGCCGTAACGAGCTGTCACAAAGGGG
TGGGGATGCGAGGCGTGGCTGAGAAGTCTGGTAGATGAGCGAGGC


Right flanking sequence: Indices 67997 -- 68496
AGTAAATTCGGATGGTGGTGTGTCTGTATCGGAAGAACGAGACCGTGGACGGGCTAGTATGTGCA
TTGGCTATTCGATACTACTTTTGGACATGCGATAATCAAAACGCTATTGACGGATGATCAGGCTT
GGAATTGTTGATCCTGCAATGCTGAACACGTAGATAAGCTGGTCTAGTTTGACATCCTAAAAGTT
TAATCCACTTCAAGAGCGATTTGACCCTCTTTGAAGTGAGGTCTTCGCAGGCGTAGGGTTGGATC
AACTCCAATGCTGATTCAAACCTTAGCGAATCCACTGTTTCCCGAGACGTTTCCAACAATCAACC
TCGATAGCATGAACACGCCAGAGTGGTCGTCTGGTTCGAAGTCTACACAGCGACTGCTTTTGATC
GCTAAAACCTGTTATCAGCCTTGTTGATGCCTATTCTACCAACTAAAGGCTTTGGTTGCCTTGAT
TCTAGCAAGAATCCATCTCACGTCAAATTGAAGATAAACGATGGT



Found at i:68734 original size:12 final size:12

Alignment explanation


    Indices: 68714--68760  Score: 67
    Period size: 12  Copynumber: 3.9  Consensus size: 12

      68704 TTCAAATCCA

                *       
      68714 CATCCAAGTACT
          1 CATCTAAGTACT

            *           
      68726 TATCTAAGTACT
          1 CATCTAAGTACT

                       *
      68738 CATCTAAGTACA
          1 CATCTAAGTACT

                       
      68750 CATCTAAGTAC
          1 CATCTAAGTAC

      68761 ATCCACAGTA


Statistics
Matches: 31,  Mismatches: 4, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  12   31  1.00

ACGTcount: A:0.36, C:0.26, G:0.09, T:0.30


Consensus pattern (12 bp):   
CATCTAAGTACT

Left flanking sequence: Indices 68214 -- 68713
GACCCTCTTTGAAGTGAGGTCTTCGCAGGCGTAGGGTTGGATCAACTCCAATGCTGATTCAAACC
TTAGCGAATCCACTGTTTCCCGAGACGTTTCCAACAATCAACCTCGATAGCATGAACACGCCAGA
GTGGTCGTCTGGTTCGAAGTCTACACAGCGACTGCTTTTGATCGCTAAAACCTGTTATCAGCCTT
GTTGATGCCTATTCTACCAACTAAAGGCTTTGGTTGCCTTGATTCTAGCAAGAATCCATCTCACG
TCAAATTGAAGATAAACGATGGTCTAGTCGCAGATCCATGTACCATTGTATCTCAAATCGGTACT
CCACAATGGCGCAACAACGACACTCAGCGACCCCAACTCCAACTTTGGATGATCCAAAGGCTCTA
GTCTCAAGAATAGACCAATTTTGGTTGGGCTCATACCACTTAGACACAATACACTCCACAACGTC
CCATTCAGACAGATCGAAAGAGATCTAAATACACATTCAAATCCA


Right flanking sequence: Indices 68761 -- 69260
ATCCACAGTATAGAAGGTCAAATCTACAGCAAGCTCAAATCACCGCCAAAAACCTCGTGGACTCC
CATCAACTTCACTACTCCACATTAAATCCACTACTCCTCATTGAATCCACTACTCCACATTTAAT
CCACCACTGGTCATTAAACTCCTCATTTACACCACCAAACCACCAAAATATCATTAATACATTAT
AATACATCACTCGTCGTCGTCGGAGTCGATGATCCGCCGCCGCTTGCGCTCCTCCTTGTACTTGT
CCGCCCCGGCCTCCTTGACCCGCTTCAACCGCTCGGCCCGCTCATCCTGGTCGTCTTCTTCCTCT
TCCTCCTCTTCCTCCTCTTCCACCTCCTCATCATCACCAGCCACGAAGTCGTCCTCCTCGTCGTA
CTCGTCGTCGCCGTAGGTCCGGGCAAACCGCAGGTACAGCGGCTCCGCGGGCAGCCCGGCCCGCT
CGCGGCGCCGGTCCTCCTGCGCGCGTCGCTTCAGCTCCATCTGCC



Found at i:68859 original size:19 final size:19

Alignment explanation


    Indices: 68835--68894  Score: 93
    Period size: 19  Copynumber: 3.2  Consensus size: 19

      68825 CCATCAACTT

                               
      68835 CACTACTCCACATTAAATC
          1 CACTACTCCACATTAAATC

                     *    *    
      68854 CACTACTCCTCATTGAATC
          1 CACTACTCCACATTAAATC

                          *    
      68873 CACTACTCCACATTTAATC
          1 CACTACTCCACATTAAATC

               
      68892 CAC
          1 CAC

      68895 CACTGGTCAT


Statistics
Matches: 37,  Mismatches: 4, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  19   37  1.00

ACGTcount: A:0.32, C:0.38, G:0.02, T:0.28


Consensus pattern (19 bp):   
CACTACTCCACATTAAATC

Left flanking sequence: Indices 68335 -- 68834
CACGCCAGAGTGGTCGTCTGGTTCGAAGTCTACACAGCGACTGCTTTTGATCGCTAAAACCTGTT
ATCAGCCTTGTTGATGCCTATTCTACCAACTAAAGGCTTTGGTTGCCTTGATTCTAGCAAGAATC
CATCTCACGTCAAATTGAAGATAAACGATGGTCTAGTCGCAGATCCATGTACCATTGTATCTCAA
ATCGGTACTCCACAATGGCGCAACAACGACACTCAGCGACCCCAACTCCAACTTTGGATGATCCA
AAGGCTCTAGTCTCAAGAATAGACCAATTTTGGTTGGGCTCATACCACTTAGACACAATACACTC
CACAACGTCCCATTCAGACAGATCGAAAGAGATCTAAATACACATTCAAATCCACATCCAAGTAC
TTATCTAAGTACTCATCTAAGTACACATCTAAGTACATCCACAGTATAGAAGGTCAAATCTACAG
CAAGCTCAAATCACCGCCAAAAACCTCGTGGACTCCCATCAACTT


Right flanking sequence: Indices 68895 -- 69394
CACTGGTCATTAAACTCCTCATTTACACCACCAAACCACCAAAATATCATTAATACATTATAATA
CATCACTCGTCGTCGTCGGAGTCGATGATCCGCCGCCGCTTGCGCTCCTCCTTGTACTTGTCCGC
CCCGGCCTCCTTGACCCGCTTCAACCGCTCGGCCCGCTCATCCTGGTCGTCTTCTTCCTCTTCCT
CCTCTTCCTCCTCTTCCACCTCCTCATCATCACCAGCCACGAAGTCGTCCTCCTCGTCGTACTCG
TCGTCGCCGTAGGTCCGGGCAAACCGCAGGTACAGCGGCTCCGCGGGCAGCCCGGCCCGCTCGCG
GCGCCGGTCCTCCTGCGCGCGTCGCTTCAGCTCCATCTGCCTCCGGAGCTTCAACGTCTTGCGCT
CGTTCTCCTCCGCCATCCGCTGCTTGAGCAACGGGTCGTCATTACTAATAGTATTGAGGATCTTG
TCCTTCTTCTGGATGCTCTTGACCGCCTGGGTGAGCCGCCGGTGG



Found at i:69092 original size:9 final size:9

Alignment explanation


    Indices: 69074--69111  Score: 58
    Period size: 9  Copynumber: 4.2  Consensus size: 9

      69064 ATCCTGGTCG

                 *   
      69074 TCTTCTTCC
          1 TCTTCCTCC

                     
      69083 TCTTCCTCC
          1 TCTTCCTCC

                     
      69092 TCTTCCTCC
          1 TCTTCCTCC

                  *  
      69101 TCTTCCACC
          1 TCTTCCTCC

              
      69110 TC
          1 TC

      69112 CTCATCATCA


Statistics
Matches: 27,  Mismatches: 2, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
   9   27  1.00

ACGTcount: A:0.03, C:0.53, G:0.00, T:0.45


Consensus pattern (9 bp):   
TCTTCCTCC

Left flanking sequence: Indices 68574 -- 69073
ACTCCAACTTTGGATGATCCAAAGGCTCTAGTCTCAAGAATAGACCAATTTTGGTTGGGCTCATA
CCACTTAGACACAATACACTCCACAACGTCCCATTCAGACAGATCGAAAGAGATCTAAATACACA
TTCAAATCCACATCCAAGTACTTATCTAAGTACTCATCTAAGTACACATCTAAGTACATCCACAG
TATAGAAGGTCAAATCTACAGCAAGCTCAAATCACCGCCAAAAACCTCGTGGACTCCCATCAACT
TCACTACTCCACATTAAATCCACTACTCCTCATTGAATCCACTACTCCACATTTAATCCACCACT
GGTCATTAAACTCCTCATTTACACCACCAAACCACCAAAATATCATTAATACATTATAATACATC
ACTCGTCGTCGTCGGAGTCGATGATCCGCCGCCGCTTGCGCTCCTCCTTGTACTTGTCCGCCCCG
GCCTCCTTGACCCGCTTCAACCGCTCGGCCCGCTCATCCTGGTCG


Right flanking sequence: Indices 69112 -- 69611
CTCATCATCACCAGCCACGAAGTCGTCCTCCTCGTCGTACTCGTCGTCGCCGTAGGTCCGGGCAA
ACCGCAGGTACAGCGGCTCCGCGGGCAGCCCGGCCCGCTCGCGGCGCCGGTCCTCCTGCGCGCGT
CGCTTCAGCTCCATCTGCCTCCGGAGCTTCAACGTCTTGCGCTCGTTCTCCTCCGCCATCCGCTG
CTTGAGCAACGGGTCGTCATTACTAATAGTATTGAGGATCTTGTCCTTCTTCTGGATGCTCTTGA
CCGCCTGGGTGAGCCGCCGGTGGGTGCTGGTGAGCGTCAGCGCCGGCAAGAGACTCACGCTCTTC
AGCACCAACAGGTCTGCCTGGAGCATGTCGTGGTCGTCGTGCAGCCGCACGAGCCACTGGTCGGT
CACGGGGATCTGCTTGAAGTCAAAGAGCTCCAGCCCGATCTTGAGCAGCACCAGCCCGTCGTCCC
ACTCGACAAAGTGGGCGTTGCTCTGCTTGATGATGTCCTGGCCCT



Found at i:70610 original size:40 final size:41

Alignment explanation


    Indices: 70555--70650  Score: 124
    Period size: 41  Copynumber: 2.4  Consensus size: 41

      70545 TTAATGTATC

                                  *                   
      70555 GTAGC-GGTGGAACAAAGGCA-GAGCTATGGAAATTGGCAAT
          1 GTAGCAGG-GGAACAAAGGCATAAGCTATGGAAATTGGCAAT

                                   *               * 
      70595 GTAGCAGGGGAACAAAGGCATAATCTATGGAAATTGGCATT
          1 GTAGCAGGGGAACAAAGGCATAAGCTATGGAAATTGGCAAT

              *    *       
      70636 GTGGCAGCGGAACAA
          1 GTAGCAGGGGAACAA

      70651 TGGGTTTATT


Statistics
Matches: 49,  Mismatches: 5, Indels: 3
        0.86            0.09        0.05

Matches are distributed among these distances:
  40   17  0.35
  41   32  0.65

ACGTcount: A:0.35, C:0.14, G:0.33, T:0.18


Consensus pattern (41 bp):   
GTAGCAGGGGAACAAAGGCATAAGCTATGGAAATTGGCAAT

Left flanking sequence: Indices 70055 -- 70554
GTGGATGTAGAGGCGGTGGTGGAGATGACTGCTGGGGAGGCCGCAAGCGGCGCCCCCCCAGTCCC
CCCCCACCGCTTGTTCTGGTGGGTGGTGATGGGTGGTGGTGGGTAATGGTTGGTGAGAGGTGAAG
AGAAGACGTGGGATGGTGGAGGTTTTGTGGGAAGGTGGGTGAGTTAGGGGAGTAGGTGGATGGTG
GTAGAGTGGTGTGTGAGAGTGTAGCGATGGGTTAGAGATTAGAGTTCGAACGGGTACCTACGCGT
TGTACGGCCCGTTGCTTTACCTGTTTGGTTTGTTTTCGCACTGGTTACCAGATGCCTGTAGTTTG
AGAGCTTTAAAGACGCGGTAAAGTCTACTTTCTGTGCATGTTTCATGATCTAGAGTGTGGTGCTA
TGTAGCGTGATGCCAAGTAATCTTCACAGATCGCCGTAGGGCCTGTTTCAGGCTTTGTTGGTAAC
ATGTCGTAGATCGCGGTGGTACAAGTGAAACGCATTTAATGTATC


Right flanking sequence: Indices 70651 -- 71150
TGGGTTTATTGCACTCGAATCGACAACCAGTGGCGGCTCGGGCTCACGACAGGGTCGATGAGACG
AACATACAACGGATATAATGGTAGCAGAGTAGCGACGAGGGTAACCAATAGCGCGAGATCGATAA
TCTAAGATGGAATTGGCTACAATAGGTTGTTTACCACGGAAGGTAGCGTGATTGGTGGATAAGAA
GAAGTGATCGAAGCTTTGGGGTTCTGAAAGTCGATAGTAGAGCCACGAAAGCATCGACAGTAGAG
CTACGAGATAGTAGAGCTACGAAACCATTGATAGTAGAGCTAGCATCGAGCTACGACAGTAACGT
TGACAACCTGTAGCGAGCAAACTAGTCCCAGCCAAGATGGCATTGAGCCTACTACACGCTCGCTA
CCCATACCCAACTACTGTTCAATTCCAACCCACCACCTGGTACTCACAAATCTCTTGACGATCCT
ACCATTCCCACCTTATCGGCTATCACCAACCACCAGTCAACACCA



Found at i:70933 original size:39 final size:39

Alignment explanation


    Indices: 70878--70952  Score: 114
    Period size: 39  Copynumber: 1.9  Consensus size: 39

      70868 TCTGAAAGTC

                              *                    
      70878 GATAGTAGAGCCACGAAAGCATCGACAGTAGAGCTACGA
          1 GATAGTAGAGCCACGAAACCATCGACAGTAGAGCTACGA

                       *          *  *          
      70917 GATAGTAGAGCTACGAAACCATTGATAGTAGAGCTA
          1 GATAGTAGAGCCACGAAACCATCGACAGTAGAGCTA

      70953 GCATCGAGCT


Statistics
Matches: 32,  Mismatches: 4, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  39   32  1.00

ACGTcount: A:0.39, C:0.17, G:0.27, T:0.17


Consensus pattern (39 bp):   
GATAGTAGAGCCACGAAACCATCGACAGTAGAGCTACGA

Left flanking sequence: Indices 70378 -- 70877
TGAGAGCTTTAAAGACGCGGTAAAGTCTACTTTCTGTGCATGTTTCATGATCTAGAGTGTGGTGC
TATGTAGCGTGATGCCAAGTAATCTTCACAGATCGCCGTAGGGCCTGTTTCAGGCTTTGTTGGTA
ACATGTCGTAGATCGCGGTGGTACAAGTGAAACGCATTTAATGTATCGTAGCGGTGGAACAAAGG
CAGAGCTATGGAAATTGGCAATGTAGCAGGGGAACAAAGGCATAATCTATGGAAATTGGCATTGT
GGCAGCGGAACAATGGGTTTATTGCACTCGAATCGACAACCAGTGGCGGCTCGGGCTCACGACAG
GGTCGATGAGACGAACATACAACGGATATAATGGTAGCAGAGTAGCGACGAGGGTAACCAATAGC
GCGAGATCGATAATCTAAGATGGAATTGGCTACAATAGGTTGTTTACCACGGAAGGTAGCGTGAT
TGGTGGATAAGAAGAAGTGATCGAAGCTTTGGGGTTCTGAAAGTC


Right flanking sequence: Indices 70953 -- 71452
GCATCGAGCTACGACAGTAACGTTGACAACCTGTAGCGAGCAAACTAGTCCCAGCCAAGATGGCA
TTGAGCCTACTACACGCTCGCTACCCATACCCAACTACTGTTCAATTCCAACCCACCACCTGGTA
CTCACAAATCTCTTGACGATCCTACCATTCCCACCTTATCGGCTATCACCAACCACCAGTCAACA
CCACCCACCAGAACAAGCGGTGGGGGGGTCTGGGGGGGCGCCGCTTGCGGCCCCCCCAGCAGCCA
TCTCCACGATCTCCACCCTGTCTACGTCCACGAAACCCGCTTCTCCACACCATAATTACAATCAC
TCATGGTCCACATTATCCCATTGTCCACAATGGTTGCCACCAACCACCCAGACCACCCGCCTCTG
TCCCAGTCTCACCCGCCTCTGTCCCAGTCTCGCCCGCGTCCATTATCGCCTGCGTGACCCGCCAT
GCCTCGCGTGTTCCACCGTAAAATACCCCATACAGATTCCATAAA



Found at i:71356 original size:21 final size:21

Alignment explanation


    Indices: 71331--71379  Score: 89
    Period size: 21  Copynumber: 2.3  Consensus size: 21

      71321 CCACCCAGAC

                                 
      71331 CACCCGCCTCTGTCCCAGTCT
          1 CACCCGCCTCTGTCCCAGTCT

                                 
      71352 CACCCGCCTCTGTCCCAGTCT
          1 CACCCGCCTCTGTCCCAGTCT

             *     
      71373 CGCCCGC
          1 CACCCGC

      71380 GTCCATTATC


Statistics
Matches: 27,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  21   27  1.00

ACGTcount: A:0.08, C:0.55, G:0.16, T:0.20


Consensus pattern (21 bp):   
CACCCGCCTCTGTCCCAGTCT

Left flanking sequence: Indices 70831 -- 71330
ATTGGTGGATAAGAAGAAGTGATCGAAGCTTTGGGGTTCTGAAAGTCGATAGTAGAGCCACGAAA
GCATCGACAGTAGAGCTACGAGATAGTAGAGCTACGAAACCATTGATAGTAGAGCTAGCATCGAG
CTACGACAGTAACGTTGACAACCTGTAGCGAGCAAACTAGTCCCAGCCAAGATGGCATTGAGCCT
ACTACACGCTCGCTACCCATACCCAACTACTGTTCAATTCCAACCCACCACCTGGTACTCACAAA
TCTCTTGACGATCCTACCATTCCCACCTTATCGGCTATCACCAACCACCAGTCAACACCACCCAC
CAGAACAAGCGGTGGGGGGGTCTGGGGGGGCGCCGCTTGCGGCCCCCCCAGCAGCCATCTCCACG
ATCTCCACCCTGTCTACGTCCACGAAACCCGCTTCTCCACACCATAATTACAATCACTCATGGTC
CACATTATCCCATTGTCCACAATGGTTGCCACCAACCACCCAGAC


Right flanking sequence: Indices 71380 -- 71879
GTCCATTATCGCCTGCGTGACCCGCCATGCCTCGCGTGTTCCACCGTAAAATACCCCATACAGAT
TCCATAAAGGGTCCGCCTAAGCCACCGATCCTAAGCCACCGAATCCCTGGTACCCTGGCACCCTG
AGCATACCCTGAGCACACCCACTACGCTACACCACCCACACCACCCACTCAATCCACTCCACCCA
CACCCAAACCGCCACACTCCATTGTCTGTGAAATTGCCCACAATGGCCGCGGTCTAGCCCCTGAG
ATGGAATCACGCTAATTACGCTAAATATAGCCAACAATGGCATCACCCGAAGTGACCCATTGTGC
GTCCTCACACCACCAATGGCCCACCATCACCCACCACCACCCACCACCACCCTCGCCTGACCTCT
ACCAACTACCACCCCCACCTACGCCCCTGATCGGCCACGCATCCGCGCCCTAGGCACCACCACAC
AACCATTTGCCACCACGCCAATCCACACCGCCAATCGACGCCGCC



Found at i:71479 original size:14 final size:14

Alignment explanation


    Indices: 71460--71486  Score: 54
    Period size: 14  Copynumber: 1.9  Consensus size: 14

      71450 AAAGGGTCCG

                          
      71460 CCTAAGCCACCGAT
          1 CCTAAGCCACCGAT

                         
      71474 CCTAAGCCACCGA
          1 CCTAAGCCACCGA

      71487 ATCCCTGGTA


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  14   13  1.00

ACGTcount: A:0.30, C:0.44, G:0.15, T:0.11


Consensus pattern (14 bp):   
CCTAAGCCACCGAT

Left flanking sequence: Indices 70960 -- 71459
GCTACGACAGTAACGTTGACAACCTGTAGCGAGCAAACTAGTCCCAGCCAAGATGGCATTGAGCC
TACTACACGCTCGCTACCCATACCCAACTACTGTTCAATTCCAACCCACCACCTGGTACTCACAA
ATCTCTTGACGATCCTACCATTCCCACCTTATCGGCTATCACCAACCACCAGTCAACACCACCCA
CCAGAACAAGCGGTGGGGGGGTCTGGGGGGGCGCCGCTTGCGGCCCCCCCAGCAGCCATCTCCAC
GATCTCCACCCTGTCTACGTCCACGAAACCCGCTTCTCCACACCATAATTACAATCACTCATGGT
CCACATTATCCCATTGTCCACAATGGTTGCCACCAACCACCCAGACCACCCGCCTCTGTCCCAGT
CTCACCCGCCTCTGTCCCAGTCTCGCCCGCGTCCATTATCGCCTGCGTGACCCGCCATGCCTCGC
GTGTTCCACCGTAAAATACCCCATACAGATTCCATAAAGGGTCCG


Right flanking sequence: Indices 71487 -- 71986
ATCCCTGGTACCCTGGCACCCTGAGCATACCCTGAGCACACCCACTACGCTACACCACCCACACC
ACCCACTCAATCCACTCCACCCACACCCAAACCGCCACACTCCATTGTCTGTGAAATTGCCCACA
ATGGCCGCGGTCTAGCCCCTGAGATGGAATCACGCTAATTACGCTAAATATAGCCAACAATGGCA
TCACCCGAAGTGACCCATTGTGCGTCCTCACACCACCAATGGCCCACCATCACCCACCACCACCC
ACCACCACCCTCGCCTGACCTCTACCAACTACCACCCCCACCTACGCCCCTGATCGGCCACGCAT
CCGCGCCCTAGGCACCACCACACAACCATTTGCCACCACGCCAATCCACACCGCCAATCGACGCC
GCCCGAAGACGCCGCCGTCGTCCGCGCATTGTCCTCTGGCACCGCGCCATTGTTCGCCACACCCA
CGCCATTGTTCGTCGCACCTACCCTGGTACCCCTATTTAGCCTCG



Found at i:71739 original size:10 final size:10

Alignment explanation


    Indices: 71724--71756  Score: 57
    Period size: 10  Copynumber: 3.3  Consensus size: 10

      71714 CCACCAATGG

                   *  
      71724 CCCACCATCA
          1 CCCACCACCA

                      
      71734 CCCACCACCA
          1 CCCACCACCA

                      
      71744 CCCACCACCA
          1 CCCACCACCA

               
      71754 CCC
          1 CCC

      71757 TCGCCTGACC


Statistics
Matches: 22,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  10   22  1.00

ACGTcount: A:0.27, C:0.70, G:0.00, T:0.03


Consensus pattern (10 bp):   
CCCACCACCA

Left flanking sequence: Indices 71224 -- 71723
TCCACCCTGTCTACGTCCACGAAACCCGCTTCTCCACACCATAATTACAATCACTCATGGTCCAC
ATTATCCCATTGTCCACAATGGTTGCCACCAACCACCCAGACCACCCGCCTCTGTCCCAGTCTCA
CCCGCCTCTGTCCCAGTCTCGCCCGCGTCCATTATCGCCTGCGTGACCCGCCATGCCTCGCGTGT
TCCACCGTAAAATACCCCATACAGATTCCATAAAGGGTCCGCCTAAGCCACCGATCCTAAGCCAC
CGAATCCCTGGTACCCTGGCACCCTGAGCATACCCTGAGCACACCCACTACGCTACACCACCCAC
ACCACCCACTCAATCCACTCCACCCACACCCAAACCGCCACACTCCATTGTCTGTGAAATTGCCC
ACAATGGCCGCGGTCTAGCCCCTGAGATGGAATCACGCTAATTACGCTAAATATAGCCAACAATG
GCATCACCCGAAGTGACCCATTGTGCGTCCTCACACCACCAATGG


Right flanking sequence: Indices 71757 -- 72256
TCGCCTGACCTCTACCAACTACCACCCCCACCTACGCCCCTGATCGGCCACGCATCCGCGCCCTA
GGCACCACCACACAACCATTTGCCACCACGCCAATCCACACCGCCAATCGACGCCGCCCGAAGAC
GCCGCCGTCGTCCGCGCATTGTCCTCTGGCACCGCGCCATTGTTCGCCACACCCACGCCATTGTT
CGTCGCACCTACCCTGGTACCCCTATTTAGCCTCGTCTCGGACTGCGCCTACCTCGACCAACCAC
CCGTGCAGCAACCGCCTGCAGACAGCCCGTGGGCAACCCGGTGCATGGGACGTTGACGGCAACGG
TGGCCGCCTTGGCAATCGCCGGCGGGTTGTGCCACCACCTGGCCTGCGTGCTTCGCCTCTGTTTA
CCTGCGGTCTGCGCCCCGTAATGGCGTGCGTGCCAAGCCATCGGACCCGCAGCAACGGGCTGGCA
ACGGTTGGCAACGGTGGGCACCGCCAGCTCCGCGACGGTTGGGCC



Found at i:72501 original size:23 final size:23

Alignment explanation


    Indices: 72457--72501  Score: 56
    Period size: 23  Copynumber: 2.0  Consensus size: 23

      72447 GCCAGGTGGT

                 *       *         
      72457 GGTGGTGGGTGGTGGTGGGGCCA
          1 GGTGGCGGGTGGTCGTGGGGCCA

                                   
      72480 GGTGGCGGGTGG-CGTGGTGGCC
          1 GGTGGCGGGTGGTCGTGG-GGCC

      72502 GTACGGTCGT


Statistics
Matches: 19,  Mismatches: 2, Indels: 2
        0.83            0.09        0.09

Matches are distributed among these distances:
  22    4  0.21
  23   15  0.79

ACGTcount: A:0.02, C:0.13, G:0.64, T:0.20


Consensus pattern (23 bp):   
GGTGGCGGGTGGTCGTGGGGCCA

Left flanking sequence: Indices 71957 -- 72456
CACCTACCCTGGTACCCCTATTTAGCCTCGTCTCGGACTGCGCCTACCTCGACCAACCACCCGTG
CAGCAACCGCCTGCAGACAGCCCGTGGGCAACCCGGTGCATGGGACGTTGACGGCAACGGTGGCC
GCCTTGGCAATCGCCGGCGGGTTGTGCCACCACCTGGCCTGCGTGCTTCGCCTCTGTTTACCTGC
GGTCTGCGCCCCGTAATGGCGTGCGTGCCAAGCCATCGGACCCGCAGCAACGGGCTGGCAACGGT
TGGCAACGGTGGGCACCGCCAGCTCCGCGACGGTTGGGCCCGCACAAAGCCCCCGGCTACGCCGT
GCCCACACGCCGTCGATTGCGGTGGGCCCGGTGGCGGCAGGGTGGTTGCCCGATGTTCATAACCG
GGCGCGTAAACACAAAGCCCTTGCCACTGCGTCGTCAATGCAGCACGAAGCGAGCACGGCGTGCG
GAAGGTGTAGAAGCGTGGCGTGGGTGGGTAGCGTGGCCAGGTGGT


Right flanking sequence: Indices 72502 -- 73001
GTACGGTCGTCGGGTGGCGTTTTGGTGGGCGTTTCACTCCTTTCTTTTGTCACCCGCCTGACCCT
ACGCGTTCTAAACCAGAGCCTACTGAAATAACAACCAAAAAAACCACCAAAAAAACCACCAAAAA
AACCAAAAAAAACCACCAGAAACCACCAGAAAACCACCAAAAACCACCAAAAAAACCACACCCAC
ACCACAACCACCACCCCACCTCTCTGTAACCAACCCTAAGCAACCTCTTCATTCGTCTACCACCC
CACCACCTCTCGCCATGTCTCCACCCACCTTCCCCTCCGGTCTAGACGTTTATTTTTACACGCGC
CCTGCACACTGCACGGGTCTTTTTTCTCTTCATCACCAGGCTTGGGCTGCCAACACAGTTGTCAT
GAGCCACTCGTCGAGCCCCTCCAACCGGAATTCGATATTTGGCTGGGTCAAGAACCTCAAGCGCG
GGCTGGTGATGCTGCTGGACTCGGTCAACGAGATCCTGGACCCGG



Found at i:72617 original size:12 final size:12

Alignment explanation


    Indices: 72600--72690  Score: 115
    Period size: 12  Copynumber: 8.2  Consensus size: 12

      72590 TGAAATAACA

                        
      72600 ACCAAAAAAACC
          1 ACCAAAAAAACC

                        
      72612 ACCAAAAAAACC
          1 ACCAAAAAAACC

                        
      72624 ACCAAAAAAACC
          1 ACCAAAAAAACC

                        
      72636 A--AAAAAAACC
          1 ACCAAAAAAACC

                  *     
      72646 ACC--AGAAACC
          1 ACCAAAAAAACC

                 *      
      72656 ACC-AGAAAACC
          1 ACCAAAAAAACC

                        
      72667 ACC--AAAAACC
          1 ACCAAAAAAACC

                        
      72677 ACCAAAAAAACC
          1 ACCAAAAAAACC

              
      72689 AC
          1 AC

      72691 ACCCACACCA


Statistics
Matches: 70,  Mismatches: 4, Indels: 10
        0.83            0.05        0.12

Matches are distributed among these distances:
  10   28  0.40
  11    8  0.11
  12   34  0.49

ACGTcount: A:0.64, C:0.34, G:0.02, T:0.00


Consensus pattern (12 bp):   
ACCAAAAAAACC

Left flanking sequence: Indices 72100 -- 72599
CCGGCGGGTTGTGCCACCACCTGGCCTGCGTGCTTCGCCTCTGTTTACCTGCGGTCTGCGCCCCG
TAATGGCGTGCGTGCCAAGCCATCGGACCCGCAGCAACGGGCTGGCAACGGTTGGCAACGGTGGG
CACCGCCAGCTCCGCGACGGTTGGGCCCGCACAAAGCCCCCGGCTACGCCGTGCCCACACGCCGT
CGATTGCGGTGGGCCCGGTGGCGGCAGGGTGGTTGCCCGATGTTCATAACCGGGCGCGTAAACAC
AAAGCCCTTGCCACTGCGTCGTCAATGCAGCACGAAGCGAGCACGGCGTGCGGAAGGTGTAGAAG
CGTGGCGTGGGTGGGTAGCGTGGCCAGGTGGTGGTGGTGGGTGGTGGTGGGGCCAGGTGGCGGGT
GGCGTGGTGGCCGTACGGTCGTCGGGTGGCGTTTTGGTGGGCGTTTCACTCCTTTCTTTTGTCAC
CCGCCTGACCCTACGCGTTCTAAACCAGAGCCTACTGAAATAACA


Right flanking sequence: Indices 72691 -- 73190
ACCCACACCACAACCACCACCCCACCTCTCTGTAACCAACCCTAAGCAACCTCTTCATTCGTCTA
CCACCCCACCACCTCTCGCCATGTCTCCACCCACCTTCCCCTCCGGTCTAGACGTTTATTTTTAC
ACGCGCCCTGCACACTGCACGGGTCTTTTTTCTCTTCATCACCAGGCTTGGGCTGCCAACACAGT
TGTCATGAGCCACTCGTCGAGCCCCTCCAACCGGAATTCGATATTTGGCTGGGTCAAGAACCTCA
AGCGCGGGCTGGTGATGCTGCTGGACTCGGTCAACGAGATCCTGGACCCGGAGTTCAGCGACCAC
AGCCCCACCAAGGAACACATGGTGCCCCCCCAGTCCATCCCCATTCCCCAGTCCCAGGGGGCGCT
GGACTTCAACTTCGCCCTGCTGCCGTTGCTGCCCCGGGCCCTGGAGTTTTTGCGCCCGCTTTTGC
ACCACAAACTGCGGCTGCTGACCAACGTCAACACCCCCCGCGGCC



Found at i:72624 original size:21 final size:22

Alignment explanation


    Indices: 72599--72691  Score: 104
    Period size: 21  Copynumber: 4.3  Consensus size: 22

      72589 CTGAAATAAC

                                  
      72599 AACCA-AAAAAACCACCAAAAA
          1 AACCACAAAAAACCACCAAAAA

                                    
      72620 AACCACCAAAAAA--ACCAAAAAA
          1 AACCA-CAAAAAACCACC-AAAAA

                  * *          *  
      72642 AACCACCAGAAACCACC-AGAA
          1 AACCACAAAAAACCACCAAAAA

                  *               
      72663 AACCACCAAAAACCACCAAAAA
          1 AACCACAAAAAACCACCAAAAA

                   
      72685 AACCACA
          1 AACCACA

      72692 CCCACACCAC


Statistics
Matches: 60,  Mismatches: 6, Indels: 11
        0.78            0.08        0.14

Matches are distributed among these distances:
  21   32  0.53
  22   19  0.32
  23    9  0.15

ACGTcount: A:0.65, C:0.33, G:0.02, T:0.00


Consensus pattern (22 bp):   
AACCACAAAAAACCACCAAAAA

Left flanking sequence: Indices 72099 -- 72598
GCCGGCGGGTTGTGCCACCACCTGGCCTGCGTGCTTCGCCTCTGTTTACCTGCGGTCTGCGCCCC
GTAATGGCGTGCGTGCCAAGCCATCGGACCCGCAGCAACGGGCTGGCAACGGTTGGCAACGGTGG
GCACCGCCAGCTCCGCGACGGTTGGGCCCGCACAAAGCCCCCGGCTACGCCGTGCCCACACGCCG
TCGATTGCGGTGGGCCCGGTGGCGGCAGGGTGGTTGCCCGATGTTCATAACCGGGCGCGTAAACA
CAAAGCCCTTGCCACTGCGTCGTCAATGCAGCACGAAGCGAGCACGGCGTGCGGAAGGTGTAGAA
GCGTGGCGTGGGTGGGTAGCGTGGCCAGGTGGTGGTGGTGGGTGGTGGTGGGGCCAGGTGGCGGG
TGGCGTGGTGGCCGTACGGTCGTCGGGTGGCGTTTTGGTGGGCGTTTCACTCCTTTCTTTTGTCA
CCCGCCTGACCCTACGCGTTCTAAACCAGAGCCTACTGAAATAAC


Right flanking sequence: Indices 72692 -- 73191
CCCACACCACAACCACCACCCCACCTCTCTGTAACCAACCCTAAGCAACCTCTTCATTCGTCTAC
CACCCCACCACCTCTCGCCATGTCTCCACCCACCTTCCCCTCCGGTCTAGACGTTTATTTTTACA
CGCGCCCTGCACACTGCACGGGTCTTTTTTCTCTTCATCACCAGGCTTGGGCTGCCAACACAGTT
GTCATGAGCCACTCGTCGAGCCCCTCCAACCGGAATTCGATATTTGGCTGGGTCAAGAACCTCAA
GCGCGGGCTGGTGATGCTGCTGGACTCGGTCAACGAGATCCTGGACCCGGAGTTCAGCGACCACA
GCCCCACCAAGGAACACATGGTGCCCCCCCAGTCCATCCCCATTCCCCAGTCCCAGGGGGCGCTG
GACTTCAACTTCGCCCTGCTGCCGTTGCTGCCCCGGGCCCTGGAGTTTTTGCGCCCGCTTTTGCA
CCACAAACTGCGGCTGCTGACCAACGTCAACACCCCCCGCGGCCG



Found at i:72630 original size:10 final size:10

Alignment explanation


    Indices: 72605--72684  Score: 88
    Period size: 10  Copynumber: 7.5  Consensus size: 10

      72595 TAACAACCAA

                      
      72605 AAAAACCACC
          1 AAAAACCACC

                        
      72615 AAAAAAACCACC
          1 --AAAAACCACC

                      **
      72627 AAAAAAACCAAA
          1 --AAAAACCACC

                      
      72639 AAAAACCACC
          1 AAAAACCACC

             *        
      72649 AGAAACCACC
          1 AAAAACCACC

                       
      72659 AGAAAACCACC
          1 A-AAAACCACC

                      
      72670 AAAAACCACC
          1 AAAAACCACC

                 
      72680 AAAAA
          1 AAAAA

      72685 AACCACACCC


Statistics
Matches: 61,  Mismatches: 6, Indels: 4
        0.86            0.08        0.06

Matches are distributed among these distances:
  10   32  0.52
  11    9  0.15
  12   20  0.33

ACGTcount: A:0.65, C:0.33, G:0.03, T:0.00


Consensus pattern (10 bp):   
AAAAACCACC

Left flanking sequence: Indices 72105 -- 72604
GGGTTGTGCCACCACCTGGCCTGCGTGCTTCGCCTCTGTTTACCTGCGGTCTGCGCCCCGTAATG
GCGTGCGTGCCAAGCCATCGGACCCGCAGCAACGGGCTGGCAACGGTTGGCAACGGTGGGCACCG
CCAGCTCCGCGACGGTTGGGCCCGCACAAAGCCCCCGGCTACGCCGTGCCCACACGCCGTCGATT
GCGGTGGGCCCGGTGGCGGCAGGGTGGTTGCCCGATGTTCATAACCGGGCGCGTAAACACAAAGC
CCTTGCCACTGCGTCGTCAATGCAGCACGAAGCGAGCACGGCGTGCGGAAGGTGTAGAAGCGTGG
CGTGGGTGGGTAGCGTGGCCAGGTGGTGGTGGTGGGTGGTGGTGGGGCCAGGTGGCGGGTGGCGT
GGTGGCCGTACGGTCGTCGGGTGGCGTTTTGGTGGGCGTTTCACTCCTTTCTTTTGTCACCCGCC
TGACCCTACGCGTTCTAAACCAGAGCCTACTGAAATAACAACCAA


Right flanking sequence: Indices 72685 -- 73184
AACCACACCCACACCACAACCACCACCCCACCTCTCTGTAACCAACCCTAAGCAACCTCTTCATT
CGTCTACCACCCCACCACCTCTCGCCATGTCTCCACCCACCTTCCCCTCCGGTCTAGACGTTTAT
TTTTACACGCGCCCTGCACACTGCACGGGTCTTTTTTCTCTTCATCACCAGGCTTGGGCTGCCAA
CACAGTTGTCATGAGCCACTCGTCGAGCCCCTCCAACCGGAATTCGATATTTGGCTGGGTCAAGA
ACCTCAAGCGCGGGCTGGTGATGCTGCTGGACTCGGTCAACGAGATCCTGGACCCGGAGTTCAGC
GACCACAGCCCCACCAAGGAACACATGGTGCCCCCCCAGTCCATCCCCATTCCCCAGTCCCAGGG
GGCGCTGGACTTCAACTTCGCCCTGCTGCCGTTGCTGCCCCGGGCCCTGGAGTTTTTGCGCCCGC
TTTTGCACCACAAACTGCGGCTGCTGACCAACGTCAACACCCCCC



Found at i:72701 original size:44 final size:44

Alignment explanation


    Indices: 72607--72690  Score: 118
    Period size: 43  Copynumber: 1.9  Consensus size: 44

      72597 ACAACCAAAA

                                                       *
      72607 AAACCACCAAAAAAACCACCAAAAAAACCAAAAAAAACCACCAG
          1 AAACCACCAAAAAAACCACCAAAAAAACCAAAAAAAACCACCAC

                      *               *               
      72651 AAACCACC-AGAAAACCACCAAAAACCACC-AAAAAAACCAC
          1 AAACCACCAAAAAAACCACCAAAAA-AACCAAAAAAAACCAC

      72691 ACCCACACCA


Statistics
Matches: 37,  Mismatches: 2, Indels: 3
        0.88            0.05        0.07

Matches are distributed among these distances:
  43   26  0.70
  44   11  0.30

ACGTcount: A:0.63, C:0.35, G:0.02, T:0.00


Consensus pattern (44 bp):   
AAACCACCAAAAAAACCACCAAAAAAACCAAAAAAAACCACCAC

Left flanking sequence: Indices 72107 -- 72606
GTTGTGCCACCACCTGGCCTGCGTGCTTCGCCTCTGTTTACCTGCGGTCTGCGCCCCGTAATGGC
GTGCGTGCCAAGCCATCGGACCCGCAGCAACGGGCTGGCAACGGTTGGCAACGGTGGGCACCGCC
AGCTCCGCGACGGTTGGGCCCGCACAAAGCCCCCGGCTACGCCGTGCCCACACGCCGTCGATTGC
GGTGGGCCCGGTGGCGGCAGGGTGGTTGCCCGATGTTCATAACCGGGCGCGTAAACACAAAGCCC
TTGCCACTGCGTCGTCAATGCAGCACGAAGCGAGCACGGCGTGCGGAAGGTGTAGAAGCGTGGCG
TGGGTGGGTAGCGTGGCCAGGTGGTGGTGGTGGGTGGTGGTGGGGCCAGGTGGCGGGTGGCGTGG
TGGCCGTACGGTCGTCGGGTGGCGTTTTGGTGGGCGTTTCACTCCTTTCTTTTGTCACCCGCCTG
ACCCTACGCGTTCTAAACCAGAGCCTACTGAAATAACAACCAAAA


Right flanking sequence: Indices 72691 -- 73190
ACCCACACCACAACCACCACCCCACCTCTCTGTAACCAACCCTAAGCAACCTCTTCATTCGTCTA
CCACCCCACCACCTCTCGCCATGTCTCCACCCACCTTCCCCTCCGGTCTAGACGTTTATTTTTAC
ACGCGCCCTGCACACTGCACGGGTCTTTTTTCTCTTCATCACCAGGCTTGGGCTGCCAACACAGT
TGTCATGAGCCACTCGTCGAGCCCCTCCAACCGGAATTCGATATTTGGCTGGGTCAAGAACCTCA
AGCGCGGGCTGGTGATGCTGCTGGACTCGGTCAACGAGATCCTGGACCCGGAGTTCAGCGACCAC
AGCCCCACCAAGGAACACATGGTGCCCCCCCAGTCCATCCCCATTCCCCAGTCCCAGGGGGCGCT
GGACTTCAACTTCGCCCTGCTGCCGTTGCTGCCCCGGGCCCTGGAGTTTTTGCGCCCGCTTTTGC
ACCACAAACTGCGGCTGCTGACCAACGTCAACACCCCCCGCGGCC



Found at i:75254 original size:14 final size:14

Alignment explanation


    Indices: 75235--75262  Score: 56
    Period size: 14  Copynumber: 2.0  Consensus size: 14

      75225 TCAACGGTAC

                          
      75235 CAAACCAGAACGCT
          1 CAAACCAGAACGCT

                          
      75249 CAAACCAGAACGCT
          1 CAAACCAGAACGCT

      75263 TTATACCGCT


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  14   14  1.00

ACGTcount: A:0.43, C:0.36, G:0.14, T:0.07


Consensus pattern (14 bp):   
CAAACCAGAACGCT

Left flanking sequence: Indices 74735 -- 75234
TGGCTTTGGGAACCAGTAGGGTCTGAAAATTGTATTGGAAGGTTTATTTGGTAGGGGAGAGTTGG
TGGATTGGATTGTTGGAGCTTTTTTGGAGCTTGGAGCCTTGAGTTGTGATATATTTCTTCTCGAT
CTGATAGGATCTTAGTGTTTGGCCGGGGTCGATTACATCGTAAAGTAATGGCAGTAAAGGCACTT
TGGACGAAGCTCTGTCTTTAGGTAGTACAGTACCTTTGAACAAGAGTGGCTGATAGAACCTGAAC
CCTGGTTAGTTTTTTTTCTGGCATGGTGGATATATGGCATTGATTGTAGACCCTGGCTGGTAGGC
AGATCTCAGCACGAAAGTACAATGGACGGGAAAAAGTCACCCAAGCCAACAATTTAGACTACAGA
CAATTCAGATAGTTCTCAAAAAGTGTTAAAAAGACAGTAACAGTGACTGCTGCTAATCAGTGTGT
TTTACGTCGTACCTGTCTCTGGTAAACAATACCAGTCAACGGTAC


Right flanking sequence: Indices 75263 -- 75762
TTATACCGCTAGTCCTTTCAGCTGGTTCAGTGCATCCCCTTCCTGTCCCAAACATCTATCCTCCT
AACCTTCACTTCCCTTTCTCATCCTGTTTCCCCATTTCTTTCAATTCTTCTCTTCCATCTTCCCT
TCCCTTCCTTCTTTTCGCAGCCATTCGCACTCATCTCACCACACCCACCACCACCACCACCACTT
CCCTACACTCCCACACTCGCCATGGACCGACGAAGGCTTGTGGGACCACCCAACCTGATCACCCC
CGTGGTCGGGATCAGCCTGAACCCCGCAGACATCGCCACCGACCCCGCGTGCGACCCCCAGCTGG
ACAAGTTTTTCATCCAGGCCGGGAACATCGACAACGCCAACGGGTCGTGCTACATGGAAATCGGC
AACGGAGCCATCACGTTGGCATGCCTGGTGTTTGGCCCGCGCCCCATCAACAACAGCTTCATCAA
CAAGGCGCTGTTTCTGGTGGAAACCAAGTTTCTTCCCAATGTGCC



Found at i:76436 original size:21 final size:21

Alignment explanation


    Indices: 76406--76453  Score: 69
    Period size: 21  Copynumber: 2.3  Consensus size: 21

      76396 GGAAGAGTTG

                 *     *         
      76406 ATGGAAGGTGGGGTAGTGTTA
          1 ATGGACGGTGGAGTAGTGTTA

                                 
      76427 ATGGACGGTGGAGTAGTGTTA
          1 ATGGACGGTGGAGTAGTGTTA

             *    
      76448 AAGGAC
          1 ATGGAC

      76454 AGTGAGGTTG


Statistics
Matches: 24,  Mismatches: 3, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  21   24  1.00

ACGTcount: A:0.27, C:0.04, G:0.44, T:0.25


Consensus pattern (21 bp):   
ATGGACGGTGGAGTAGTGTTA

Left flanking sequence: Indices 75906 -- 76405
TTGTGCTGGTGATTGCATGTGCTGAGGAGGTGCTGCTCTTGCGGTTGGCGCTGTGGATGGTCAAC
TGTGCGCTGGTGGCGCTTGTCAACGCCGAGATCGAGGTGCGGGACGTGGTTACCAGTGCCCTGGC
CGAGCTGCTGTTGGCGAGCTTCATGACGATGGCTGACGACGCCATTGTGGGGTTGTGGCTCGAGG
GGGACGCCGACAAGGTGGACGAGAGCTTGGATGCGTGTCTCGCCCAGGCCCAGGCCATCAGAGCC
AACATCAACCAGTACTTGTTGAACGAGGCATAGGAAGGTGAAAATGACAGAAAAAGATGAAAGAA
GGTAGTGAGGTTTTACGATGTGACAGTGGACATGGAGCTTTCTAGGCTGTCTGTTATTGAAGGTT
TCACGAAGGATTCACGAAGGAGTCTTTTGTCTCTAATGGAGAGAGACTCACGGGCACTGTTTGAG
TGCCTATCTGTACGTATTATAATAAACCAGTAATAGGAAGAGTTG


Right flanking sequence: Indices 76454 -- 76953
AGTGAGGTTGTTTGTAGTGCTTGCCTTTTCGCTGATAGCTGGTCTTCCATTTGATTGAACTCTGC
CTACACTTGGAAGAATACTCGAAAATGATGTGTTCACTTAATCAAACACATAAAAGCCAAAGGGG
GTGGAGATTCTAAAGGCCCTTAAAGACTACCATGAGGTCTTTTGCTAACCTTAGGGCCTAACACG
TCAACTTCCTCAAACCTTGTGGCTTCCAAGACTGTGGGCCTTTTAACAAAATGAAAGCCAGTAAA
CGGCCAAAGAAACATCCGAACCATGCCTTCCACCTTTGACACCAATTCTTCGGTGACAATTCCTT
TCCAAACACCCTGCTTGGGTCTACGTTGGAACCTTGTTGGCTTGACCTTGGTGACCTGCATATAA
CTCACCACCAGATTGCCCAAGATAAGCCAAATCCACCGTTGACAGTGCCAGGGTCAATTGCCCTA
TGTCGCCCCTATTTCTCAATTGCCAATTGCCAAACGCACAACCTC



Found at i:78151 original size:15 final size:15

Alignment explanation


    Indices: 78133--78184  Score: 86
    Period size: 15  Copynumber: 3.5  Consensus size: 15

      78123 ATAGTAGCGG

                           
      78133 GAGGCTAGAGACGGA
          1 GAGGCTAGAGACGGA

                       *   
      78148 GAGGCTAGAGAGGGA
          1 GAGGCTAGAGACGGA

                         * 
      78163 GAGGCTAGAGACGAA
          1 GAGGCTAGAGACGGA

                   
      78178 GAGGCTA
          1 GAGGCTA

      78185 TCTCAGGGGT


Statistics
Matches: 34,  Mismatches: 3, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
  15   34  1.00

ACGTcount: A:0.35, C:0.12, G:0.46, T:0.08


Consensus pattern (15 bp):   
GAGGCTAGAGACGGA

Left flanking sequence: Indices 77633 -- 78132
AGAGCGTGGACTATATGAACACAGTACAGCTAGTGCACAAGTTTATCGCCGAGACGTATAGCGCT
GATCTGCTCAACATCGCCATCCAGGACGGCCCCGAGCTGGGCCAGCTGGTGCCCCATCTACACAC
CCACATCATCCCCCGGTACAAGGCCGACGGGTGGGGGGACAACATTTATAAGGACCTAGAGAGTA
GTGACATGGAGGAGCAGTACCGCGAGTTTTTCGCCCGCAAGAAGCACTGGAAGACGACCCACGAC
GACGAGCTCGATCAGCTGGACGACGAGCGCCACAACCGCACAGAGGCGGAGATGGCCAAGGAGGC
GACGTGGCTCGGAGAAAAGCTCCAGGTGTTTTTTGAAAAGCAGATGCGCCAGCGGGAACAGGACC
AGATGGCGGTCAACTTTGATTTTGACCGGATATACAGCGACAAGAGCTACTAGAGGCTATAGATT
ATAGAGGATGAGACAGGTAGGAGTGAGAGCGAGGGATAGTAGCGG


Right flanking sequence: Indices 78185 -- 78684
TCTCAGGGGTATTTAATTGGAATGTTTAGTCATGCACGTGGTGGGGTATGTAGTGGTATGTGGGT
GGTATGTGGGTGGTCTCGTCTACGCGTTTCAGGACTGAGGGACATAAAGGTAAACAGTGGGAATA
GGGGTAAGGCAGGATAGGGGTCGTAAGGGGTCGAGTGGTGTTACAATTGGCCATCAGTACCAGCC
GTAATAATTGCTCGAATACCAAACAGCACTAGGTAGCTAAAACAGTGACCACCAAAATAACAAAC
CAAACAACCAAGAAACAAACCAAGAAACAAACAAATAAACCAGGAAACAAACCAGATATCAACCT
CATCAATTCGCTCACCAACTTTATCCCATCACATCGTATTCCTCCACCACCCTATTCTCACCTAC
CACCTCTCACCCACCACCTACATAGCGTAACTTTTTCGCCGCACGCACCATGGCCGACGCTCCCC
TCGACGAGATCCAATGGAAGCTGCCCGAGTTCATCCAGGAGCGGG



Found at i:78253 original size:11 final size:11

Alignment explanation


    Indices: 78237--78263  Score: 54
    Period size: 11  Copynumber: 2.5  Consensus size: 11

      78227 GGGGTATGTA

                       
      78237 GTGGTATGTGG
          1 GTGGTATGTGG

                       
      78248 GTGGTATGTGG
          1 GTGGTATGTGG

                 
      78259 GTGGT
          1 GTGGT

      78264 CTCGTCTACG


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  11   16  1.00

ACGTcount: A:0.07, C:0.00, G:0.56, T:0.37


Consensus pattern (11 bp):   
GTGGTATGTGG

Left flanking sequence: Indices 77737 -- 78236
GGCCAGCTGGTGCCCCATCTACACACCCACATCATCCCCCGGTACAAGGCCGACGGGTGGGGGGA
CAACATTTATAAGGACCTAGAGAGTAGTGACATGGAGGAGCAGTACCGCGAGTTTTTCGCCCGCA
AGAAGCACTGGAAGACGACCCACGACGACGAGCTCGATCAGCTGGACGACGAGCGCCACAACCGC
ACAGAGGCGGAGATGGCCAAGGAGGCGACGTGGCTCGGAGAAAAGCTCCAGGTGTTTTTTGAAAA
GCAGATGCGCCAGCGGGAACAGGACCAGATGGCGGTCAACTTTGATTTTGACCGGATATACAGCG
ACAAGAGCTACTAGAGGCTATAGATTATAGAGGATGAGACAGGTAGGAGTGAGAGCGAGGGATAG
TAGCGGGAGGCTAGAGACGGAGAGGCTAGAGAGGGAGAGGCTAGAGACGAAGAGGCTATCTCAGG
GGTATTTAATTGGAATGTTTAGTCATGCACGTGGTGGGGTATGTA


Right flanking sequence: Indices 78264 -- 78763
CTCGTCTACGCGTTTCAGGACTGAGGGACATAAAGGTAAACAGTGGGAATAGGGGTAAGGCAGGA
TAGGGGTCGTAAGGGGTCGAGTGGTGTTACAATTGGCCATCAGTACCAGCCGTAATAATTGCTCG
AATACCAAACAGCACTAGGTAGCTAAAACAGTGACCACCAAAATAACAAACCAAACAACCAAGAA
ACAAACCAAGAAACAAACAAATAAACCAGGAAACAAACCAGATATCAACCTCATCAATTCGCTCA
CCAACTTTATCCCATCACATCGTATTCCTCCACCACCCTATTCTCACCTACCACCTCTCACCCAC
CACCTACATAGCGTAACTTTTTCGCCGCACGCACCATGGCCGACGCTCCCCTCGACGAGATCCAA
TGGAAGCTGCCCGAGTTCATCCAGGAGCGGGGTCTCCACACGGGTAACGTGCTTGAGTACTTCCT
GCTCTCCCCGTTCTACGACCGGACCTCCAACAACCAGATCCTCAC



Found at i:78496 original size:12 final size:12

Alignment explanation


    Indices: 78446--78476  Score: 55
    Period size: 12  Copynumber: 2.7  Consensus size: 12

      78436 ATAACAAACC

                        
      78446 AAAC-AACCAAG
          1 AAACAAACCAAG

                        
      78457 AAACAAACCAAG
          1 AAACAAACCAAG

                    
      78469 AAACAAAC
          1 AAACAAAC

      78477 AAATAAACCA


Statistics
Matches: 19,  Mismatches: 0, Indels: 1
        0.95            0.00        0.05

Matches are distributed among these distances:
  11    4  0.21
  12   15  0.79

ACGTcount: A:0.68, C:0.26, G:0.06, T:0.00


Consensus pattern (12 bp):   
AAACAAACCAAG

Left flanking sequence: Indices 77946 -- 78445
GGCCAAGGAGGCGACGTGGCTCGGAGAAAAGCTCCAGGTGTTTTTTGAAAAGCAGATGCGCCAGC
GGGAACAGGACCAGATGGCGGTCAACTTTGATTTTGACCGGATATACAGCGACAAGAGCTACTAG
AGGCTATAGATTATAGAGGATGAGACAGGTAGGAGTGAGAGCGAGGGATAGTAGCGGGAGGCTAG
AGACGGAGAGGCTAGAGAGGGAGAGGCTAGAGACGAAGAGGCTATCTCAGGGGTATTTAATTGGA
ATGTTTAGTCATGCACGTGGTGGGGTATGTAGTGGTATGTGGGTGGTATGTGGGTGGTCTCGTCT
ACGCGTTTCAGGACTGAGGGACATAAAGGTAAACAGTGGGAATAGGGGTAAGGCAGGATAGGGGT
CGTAAGGGGTCGAGTGGTGTTACAATTGGCCATCAGTACCAGCCGTAATAATTGCTCGAATACCA
AACAGCACTAGGTAGCTAAAACAGTGACCACCAAAATAACAAACC


Right flanking sequence: Indices 78477 -- 78976
AAATAAACCAGGAAACAAACCAGATATCAACCTCATCAATTCGCTCACCAACTTTATCCCATCAC
ATCGTATTCCTCCACCACCCTATTCTCACCTACCACCTCTCACCCACCACCTACATAGCGTAACT
TTTTCGCCGCACGCACCATGGCCGACGCTCCCCTCGACGAGATCCAATGGAAGCTGCCCGAGTTC
ATCCAGGAGCGGGGTCTCCACACGGGTAACGTGCTTGAGTACTTCCTGCTCTCCCCGTTCTACGA
CCGGACCTCCAACAACCAGATCCTCACGATGCAGTTCCAGTTCCAGCAGATCCAGATACCCCCGG
GGGTGTCGTTCCACCAGTACTTCCAGAACCGGCTCGCGGAGATGACGGGGATCGAGTTCATCGTG
GCCTACACCCGCGAGCCCGACTTCTGGATCATCCGCAAGCAGAACCGGCTGGACCCGAAACGGGC
AGACACCCTCGCGGACTACTACGTGATCGGAGCCAACATCTACCA



Found at i:79623 original size:28 final size:28

Alignment explanation


    Indices: 79599--79702  Score: 111
    Period size: 28  Copynumber: 3.8  Consensus size: 28

      79589 TGAACTACCC

                                     * *
      79599 TAATAACGAAGTACGAACCAGACTAACG
          1 TAATAACGAAGTACGAACCAGACTAGCA

                 *       *    *  *      
      79627 TAATAGCG-AGTATGAACAAGGCTAGCA
          1 TAATAACGAAGTACGAACCAGACTAGCA

                  *              *      
      79654 TAATAATGAAGTACGAACCAGGCTAGCA
          1 TAATAACGAAGTACGAACCAGACTAGCA

                  *      *       
      79682 TAATAATGAAGTATGAACCAG
          1 TAATAACGAAGTACGAACCAG

      79703 TGAGTGGGTA


Statistics
Matches: 64,  Mismatches: 11, Indels: 2
        0.83            0.14        0.03

Matches are distributed among these distances:
  27   20  0.31
  28   44  0.69

ACGTcount: A:0.44, C:0.16, G:0.21, T:0.18


Consensus pattern (28 bp):   
TAATAACGAAGTACGAACCAGACTAGCA

Left flanking sequence: Indices 79099 -- 79598
ACAACAACAGCGCGGTGCGAAAACCCGCTACGACGCCAGCGCTGACGGCGTTGGCCCCGCTGAAG
CTGGCCACCAGCTACTTGGCCACCCCCCTTCCCGGAGCCACCCCGGCCGGGATCTCCACCGGGGT
GGGCACCAACCCCCCGTCCACAAACAACGGGTCGATGGCGACGTCGCTGGCGATCGAGATCACCG
CGGGGGCGTTTGACAACCTCTTGGGCAACGTGATCTCGCTGCTGAACTTTGGAGGTGCCCTGACC
ACCTCCAACATCAGTTTCAACGGGCTGAGCACCAGTGCGGTGGACTTGCCGAGCGAGGGCGATGC
CACGAGCATATACCTCGACGACATTCCGTTGTACGGGAAGGGGTCGACGGTGGAGATGTTGGGGT
TGAAGTTGAACCCGGACTTAGAGAGTAGCTAGCATAATAACGAGTACGAACCAGGCTGACGTGAT
AGCGAGTATGAACAGGCTAACGAAATGGCGATGTATGAACTACCC


Right flanking sequence: Indices 79703 -- 80202
TGAGTGGGTAGAACCATTGAAGTGGGTAGGAACAAGTGAAGTGGGTAGTTTTTGACTAAGTGGAA
GTGGAGGAGAATAGGTGATCAGAATCGGTGATCGTGGTAGAATTGTGGTCACTTAGGTGGATGAA
GAGAAGCATCCCTGTTCTTTGTGGGTTCTTTGTGCTAACCTTTTTTTGGGCTTTTTTAATAGACA
CGCTGTTTTGCCCTACCAGTTTTATACTATCTAGGTAGACTCTAATCGGTAACTATTTTTACTAC
AATACATGGTATCGAGTTGAAACCATTTTCCTGTGCTTATTCTTTCTCAGTTTACGTCATTGACT
TAGAAGATGTCTAAGTCTAAAGCACTGTCTAGATGAAGCCAACAAACGCCAATTACTAATTGAAA
GGCATTGGCATTAAACCTGATCACTCTATCGTAGACGTCTTCTCTAGAATCACCTGCTCAATAAT
CACCTTCCTTTACTTATCTCTTTTCTTCGTTTCACTTCTTCCTTC



Found at i:79742 original size:19 final size:19

Alignment explanation


    Indices: 79696--79750  Score: 78
    Period size: 19  Copynumber: 3.0  Consensus size: 19

      79686 AATGAAGTAT

                               
      79696 GAACCAGTG-AGTGGGTA-
          1 GAACCAGTGAAGTGGGTAG

                  *            
      79713 GAACCATTGAAGTGGGTAG
          1 GAACCAGTGAAGTGGGTAG

                *              
      79732 GAACAAGTGAAGTGGGTAG
          1 GAACCAGTGAAGTGGGTAG

      79751 TTTTTGACTA


Statistics
Matches: 33,  Mismatches: 3, Indels: 2
        0.87            0.08        0.05

Matches are distributed among these distances:
  17    8  0.24
  18    8  0.24
  19   17  0.52

ACGTcount: A:0.33, C:0.09, G:0.40, T:0.18


Consensus pattern (19 bp):   
GAACCAGTGAAGTGGGTAG

Left flanking sequence: Indices 79196 -- 79695
CGGAGCCACCCCGGCCGGGATCTCCACCGGGGTGGGCACCAACCCCCCGTCCACAAACAACGGGT
CGATGGCGACGTCGCTGGCGATCGAGATCACCGCGGGGGCGTTTGACAACCTCTTGGGCAACGTG
ATCTCGCTGCTGAACTTTGGAGGTGCCCTGACCACCTCCAACATCAGTTTCAACGGGCTGAGCAC
CAGTGCGGTGGACTTGCCGAGCGAGGGCGATGCCACGAGCATATACCTCGACGACATTCCGTTGT
ACGGGAAGGGGTCGACGGTGGAGATGTTGGGGTTGAAGTTGAACCCGGACTTAGAGAGTAGCTAG
CATAATAACGAGTACGAACCAGGCTGACGTGATAGCGAGTATGAACAGGCTAACGAAATGGCGAT
GTATGAACTACCCTAATAACGAAGTACGAACCAGACTAACGTAATAGCGAGTATGAACAAGGCTA
GCATAATAATGAAGTACGAACCAGGCTAGCATAATAATGAAGTAT


Right flanking sequence: Indices 79751 -- 80250
TTTTTGACTAAGTGGAAGTGGAGGAGAATAGGTGATCAGAATCGGTGATCGTGGTAGAATTGTGG
TCACTTAGGTGGATGAAGAGAAGCATCCCTGTTCTTTGTGGGTTCTTTGTGCTAACCTTTTTTTG
GGCTTTTTTAATAGACACGCTGTTTTGCCCTACCAGTTTTATACTATCTAGGTAGACTCTAATCG
GTAACTATTTTTACTACAATACATGGTATCGAGTTGAAACCATTTTCCTGTGCTTATTCTTTCTC
AGTTTACGTCATTGACTTAGAAGATGTCTAAGTCTAAAGCACTGTCTAGATGAAGCCAACAAACG
CCAATTACTAATTGAAAGGCATTGGCATTAAACCTGATCACTCTATCGTAGACGTCTTCTCTAGA
ATCACCTGCTCAATAATCACCTTCCTTTACTTATCTCTTTTCTTCGTTTCACTTCTTCCTTCTCT
TCATTCCCCACGCGACCATCCCTACACGCCACATAACCCCACCAC



Found at i:80854 original size:15 final size:15

Alignment explanation


    Indices: 80836--80903  Score: 102
    Period size: 15  Copynumber: 4.5  Consensus size: 15

      80826 AAGGGCGAGG

                           
      80836 AGGGCAAGGACGCCA
          1 AGGGCAAGGACGCCA

                           
      80851 AGGGCAAGGACGCCA
          1 AGGGCAAGGACGCCA

                            
      80866 AGGGCAAGGACAG-CA
          1 AGGGCAAGGAC-GCCA

                *     *    
      80881 AGGGTAAGGAGGCCA
          1 AGGGCAAGGACGCCA

                    
      80896 AGGGCAAG
          1 AGGGCAAG

      80904 AACGAGCCCA


Statistics
Matches: 48,  Mismatches: 3, Indels: 4
        0.87            0.05        0.07

Matches are distributed among these distances:
  14    1  0.02
  15   46  0.96
  16    1  0.02

ACGTcount: A:0.35, C:0.21, G:0.43, T:0.01


Consensus pattern (15 bp):   
AGGGCAAGGACGCCA

Left flanking sequence: Indices 80336 -- 80835
CCCACAAACACCACCACCCTACCCCCGTTTCCCCGTCCCACCACCCGTCCCCTTCCCCACTGTCG
CACTAAACCAAATTTTTCAGCCATCTCCCACCACNGCTTTTAACAACTTTACCAAGGTTCCCCTC
GCCAACGCCGGGCTGGCGGACTTGTCTGCCTGGCAGTTGACCCCCGAGCAGCAGGCGTTGGCCTC
GCAGTACACCACGTTGGCCCTGCGTGTCGACGAGCCCGACACCTTGGTGTCGTTGAACGACACCT
TGAGACTGAAGACGTTCATTGCGGGCAACGTGCCGCTGAAGGCGGACTTTGCGATGTTTGAGCGG
GTGTACGAGGTTGCTCCCAAGTGGACTGCTGCCTCGGACATTGCCAAATACCGCCACATCTTGCG
CTGGGTCGACCTCGTGCAGAACGTGCTCGTGGAGGTGCCCACCAAGGTTGAGATCAACTACGACG
TGGAGCTCCCCAGAGAGGTGAAGGAGAAGAAGAAGAAGGGCGAGG


Right flanking sequence: Indices 80904 -- 81403
AACGAGCCCAAGGAGGCCAAGGGGGCCAAGGGGCCCCAGGGCGAGATCTCGGAGGAGGAGAAGCA
GCGCAGAGCCGAGCAGGCCAAGGCCAAGAAGGAGGCTAAGGCCAAGGCCAAGGCTGAGGCCGCGG
CCAAGACCGCAGCCGCCGCCGTGCCCCCCAACCCCGGGATGATCGACTTCCGGGTCGGGTACATC
GAGAAGGCGGTCAAGCACCCCGATGCCGACGCGCTCTACGTGCTGACCATCCAGATGGGCGACGA
GGAGGGCCCCCGGACGGTGTGCTCCGGGTTGGTGCGCTACATCCCCTTGGAGGAGATGCAGCAGC
GGTACGTGGTCACCGTGGCCAACTTGAAGCCCGTCACCATGCGTGGGATCAAGCTGTGTGCGATG
GTGTTGTGTGCGCTGACCGAGGACAAGGTGGAGTTTGTCAACCCCCCCGAGGGTTCGAAGCCCGG
CGACAAGATCTTTTTCGAGGGCTACGATGCCGAGCCCGAGAAGCA



Found at i:82281 original size:11 final size:11

Alignment explanation


    Indices: 82265--82289  Score: 50
    Period size: 11  Copynumber: 2.3  Consensus size: 11

      82255 CCACCACATT

                       
      82265 GTCCCAACCTA
          1 GTCCCAACCTA

                       
      82276 GTCCCAACCTA
          1 GTCCCAACCTA

               
      82287 GTC
          1 GTC

      82290 TCACTAAACC


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  11   14  1.00

ACGTcount: A:0.24, C:0.44, G:0.12, T:0.20


Consensus pattern (11 bp):   
GTCCCAACCTA

Left flanking sequence: Indices 81765 -- 82264
TCTGCGTCTAAGTCTGAGTCTGAGGTGATGGATGCTTCTGACGGTCGCTTCTGTGGCAGTCGCTT
CTGTGACGTTCGTTTCTGTAATGGTCGTTTTTGTTACAGTCGTGACATTCGCTCTGTGAGGGACA
TTTGCCTTTGTGTACCTCGAGGGTTTATTGTCCCTGGCACTGTATCGAATAAGCCCTATTGACCC
TGCAAGCACTCCAGACATTGTGACAGTGATAATTTATTCCACGCACTATAACCGATTTTTTGTGA
TTCTTCACACCCTCGCTTAGGCTGGGCCCATCCCCGGTTGTGTCACAAGACCGGCTCCCCAGCGT
GACCCTTGCCACAAAATACGTCAATGGGCCCACCGGTGGAAAATAATCGAGGCTGAAGTACGTTT
ATATAAGCGACAGTTTCTCAGATGACAATTCAGCTTACTCCACAATTACGCTTGTTTCACAATAC
GCATACGTCACAACGGGGCTAAACCGTAATAATAACCACCACATT


Right flanking sequence: Indices 82290 -- 82789
TCACTAAACCTTATCGTGACGTATTTATGCCTCGGGTTTATACCTAGTTGGTTAATGCTGTGCAT
AAGCCAAGAAATACCCCAGACCACCCACGCCACCCGCTTCCCGTGCATGAAAATAATACAATGAT
AATTACTTTCGATCAGTTTATTCATAACTCATACTATGTCTATTAGGTATTATTAGGGGTGCCGA
AGCACATGATGCGTGCCTAGGCACGGGGAGCAGCAGCGGCGGAGTTGCCCTCTGCGGTTCTGACC
TCGGACTTGACGTCCTGGCCCTCAGCAGCCTTCTCCTCGTCCTCGGCCTGGGCCTCGTCGGGGGC
CTGGCCCATCTGCTTCAACAAGTCACGGATGTCGATCGAGTACTTGGACTTGACTCTCTTCTTCT
CACCGCGGTAGTAGAAGTACAACGGCACGGGGATCAAGATCGCAGCGAGACACCCAACAAGCGTG
GACGCCCACTTGACCTCCAAGTTGACAAACATCTGGCGGGTGAAC



Found at i:85670 original size:14 final size:13

Alignment explanation


    Indices: 85607--85685  Score: 74
    Period size: 12  Copynumber: 6.2  Consensus size: 13

      85597 GCAACGTGGG

                          
      85607 AGAGAAGAGGAG-A
          1 AGAGAAGA-GAGCA

            *    *       
      85620 GGAGAGGAGAGCA
          1 AGAGAAGAGAGCA

             *  *        
      85633 ATAGGA-AGAGCA
          1 AGAGAAGAGAGCA

                *        
      85645 AGAGGA-AGAGCA
          1 AGAGAAGAGAGCA

                          
      85657 AGAGAACGAGAGCA
          1 AGAGAA-GAGAGCA

                         
      85671 AGAGAAGAGAGCA
          1 AGAGAAGAGAGCA

              
      85684 AG
          1 AG

      85686 GGATCACAAT


Statistics
Matches: 55,  Mismatches: 8, Indels: 6
        0.80            0.12        0.09

Matches are distributed among these distances:
  12   25  0.45
  13   18  0.33
  14   12  0.22

ACGTcount: A:0.49, C:0.08, G:0.42, T:0.01


Consensus pattern (13 bp):   
AGAGAAGAGAGCA

Left flanking sequence: Indices 85107 -- 85606
GTACCTGTGCCCAACAGACGCACCCGGGGTTTCCGGATTCAGTGCTATATAAAGCTGGGGCACGA
GACCTAGGGGTTGCCGAAACTGCGTGTGGGTGGTGCAGCGAATTACACTCGCCGGCGAATGGTCG
GCAAACCCGTAGGCTGGGGTGGTTAGTAGCGGGGACCGGAAAAAACCGTTGGCGATCCAGAGTGC
ATGGAGTAGAGACGGGTCAGGAGTGGGTGGTTGGAGAGGTAGGCGGTGGTGGCTGAGCCTGGTGA
TGGGTCGGGACGAGCTACCGGGTGTTTATAAGCGGGATTCGTAAGCGGTAAACGTGTCCGCGAAC
GGCGATGGCGCCACTGGCTGTTGCGTGTAGCCCGTTTTGGGCGAGGCACGGCGGATAATAAGATC
GAATGACAGGGCCAAGCGACCAGCAAGTGAATGTGGGTGAAAAGAAACCGGCGTGCATGTGAGGT
GGACAGTGTGGTTGCGTTGGTTTGTGACACCAGGGGCAACGTGGG


Right flanking sequence: Indices 85686 -- 86185
GGATCACAATTAAGGTTATCACCCACTCCACAAAGACACCAGAGGGTGGTGTCATGACGACAACC
GGTGCCATGATCGCCAACCGTTTTTTCTCTGTGTATAGCGAGTTACACCTAATCCGAGCCATCCG
CCTGGTCATGTGTCTGGACCAGCGTGAACCAATCACCACCCCCCGCGGTCCGCCTAGCCAGCCTG
GGCATGCTACGACTCACCGCTAACCGTGTCTACTTACGGAAGTCACCTGATCACACCGCGACCGA
TCCAGCTGGACCCTTTTATGAGCCAACCTAGACCAATCACCACCGCGCAAGCTTCCACCAAACAC
ATCCAAGTAGACCACCCCTAGTAGACCACCCATAATAGACCACCACTACCACTCCTACCACTCTT
ACCACTCTTACACCCCTACTAAACCACCCCTAATCACCCCCTCTACCACTCCATGCCCCTATCCC
AGATCACCGATCTTGATCACCGATCACCTATCACCTTCTTCCCTC



Found at i:85759 original size:18 final size:19

Alignment explanation


    Indices: 85733--85770  Score: 51
    Period size: 18  Copynumber: 2.1  Consensus size: 19

      85723 ACCAGAGGGT

                *              
      85733 GGTGTCATGA-CGACAACC
          1 GGTGCCATGATCGACAACC

                         *     
      85751 GGTGCCATGATCGCCAACC
          1 GGTGCCATGATCGACAACC

             
      85770 G
          1 G

      85771 TTTTTTCTCT


Statistics
Matches: 17,  Mismatches: 2, Indels: 1
        0.85            0.10        0.05

Matches are distributed among these distances:
  18    9  0.53
  19    8  0.47

ACGTcount: A:0.24, C:0.32, G:0.29, T:0.16


Consensus pattern (19 bp):   
GGTGCCATGATCGACAACC

Left flanking sequence: Indices 85233 -- 85732
GTCGGCAAACCCGTAGGCTGGGGTGGTTAGTAGCGGGGACCGGAAAAAACCGTTGGCGATCCAGA
GTGCATGGAGTAGAGACGGGTCAGGAGTGGGTGGTTGGAGAGGTAGGCGGTGGTGGCTGAGCCTG
GTGATGGGTCGGGACGAGCTACCGGGTGTTTATAAGCGGGATTCGTAAGCGGTAAACGTGTCCGC
GAACGGCGATGGCGCCACTGGCTGTTGCGTGTAGCCCGTTTTGGGCGAGGCACGGCGGATAATAA
GATCGAATGACAGGGCCAAGCGACCAGCAAGTGAATGTGGGTGAAAAGAAACCGGCGTGCATGTG
AGGTGGACAGTGTGGTTGCGTTGGTTTGTGACACCAGGGGCAACGTGGGAGAGAAGAGGAGAGGA
GAGGAGAGCAATAGGAAGAGCAAGAGGAAGAGCAAGAGAACGAGAGCAAGAGAAGAGAGCAAGGG
ATCACAATTAAGGTTATCACCCACTCCACAAAGACACCAGAGGGT


Right flanking sequence: Indices 85771 -- 86270
TTTTTTCTCTGTGTATAGCGAGTTACACCTAATCCGAGCCATCCGCCTGGTCATGTGTCTGGACC
AGCGTGAACCAATCACCACCCCCCGCGGTCCGCCTAGCCAGCCTGGGCATGCTACGACTCACCGC
TAACCGTGTCTACTTACGGAAGTCACCTGATCACACCGCGACCGATCCAGCTGGACCCTTTTATG
AGCCAACCTAGACCAATCACCACCGCGCAAGCTTCCACCAAACACATCCAAGTAGACCACCCCTA
GTAGACCACCCATAATAGACCACCACTACCACTCCTACCACTCTTACCACTCTTACACCCCTACT
AAACCACCCCTAATCACCCCCTCTACCACTCCATGCCCCTATCCCAGATCACCGATCTTGATCAC
CGATCACCTATCACCTTCTTCCCTCCGATCACCTATCACCTTCTTCCTCCGATCACCTATCACCT
GTCTTCCCCAGTTCCACCATTCCCTCATTCCTCCATTCTTCTCGC



Found at i:86035 original size:14 final size:14

Alignment explanation


    Indices: 86016--86054  Score: 60
    Period size: 14  Copynumber: 2.8  Consensus size: 14

      86006 AACACATCCA

                        * 
      86016 AGTAGACCACCCCT
          1 AGTAGACCACCCAT

                          
      86030 AGTAGACCACCCAT
          1 AGTAGACCACCCAT

             *         
      86044 AATAGACCACC
          1 AGTAGACCACC

      86055 ACTACCACTC


Statistics
Matches: 23,  Mismatches: 2, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
  14   23  1.00

ACGTcount: A:0.36, C:0.38, G:0.13, T:0.13


Consensus pattern (14 bp):   
AGTAGACCACCCAT

Left flanking sequence: Indices 85516 -- 86015
CCAGCAAGTGAATGTGGGTGAAAAGAAACCGGCGTGCATGTGAGGTGGACAGTGTGGTTGCGTTG
GTTTGTGACACCAGGGGCAACGTGGGAGAGAAGAGGAGAGGAGAGGAGAGCAATAGGAAGAGCAA
GAGGAAGAGCAAGAGAACGAGAGCAAGAGAAGAGAGCAAGGGATCACAATTAAGGTTATCACCCA
CTCCACAAAGACACCAGAGGGTGGTGTCATGACGACAACCGGTGCCATGATCGCCAACCGTTTTT
TCTCTGTGTATAGCGAGTTACACCTAATCCGAGCCATCCGCCTGGTCATGTGTCTGGACCAGCGT
GAACCAATCACCACCCCCCGCGGTCCGCCTAGCCAGCCTGGGCATGCTACGACTCACCGCTAACC
GTGTCTACTTACGGAAGTCACCTGATCACACCGCGACCGATCCAGCTGGACCCTTTTATGAGCCA
ACCTAGACCAATCACCACCGCGCAAGCTTCCACCAAACACATCCA


Right flanking sequence: Indices 86055 -- 86554
ACTACCACTCCTACCACTCTTACCACTCTTACACCCCTACTAAACCACCCCTAATCACCCCCTCT
ACCACTCCATGCCCCTATCCCAGATCACCGATCTTGATCACCGATCACCTATCACCTTCTTCCCT
CCGATCACCTATCACCTTCTTCCTCCGATCACCTATCACCTGTCTTCCCCAGTTCCACCATTCCC
TCATTCCTCCATTCTTCTCGCCCGCCACGGTGCTTCCCCACAACCCTACACTCCCCATAGCCTGA
TTACACCGCCCTCCACCGCCTTGGCCCCGCAACCGGCCAGCCATAACTCCGATCGTACCTCGTAT
AACCCAACGCGAATCAAATCCCGGGAGGACCACCAGACCACACAAGGCCAGACACACAAAACCGC
CACACCACGCCTACCTCTTCCATTCACCACTCCACCCCTCCACCCTCCACCGCTCCACATCCCAC
TCCACCCCACACCACCCACACCACCCACACTCATCCCACCCCACA



Found at i:86083 original size:9 final size:9

Alignment explanation


    Indices: 86057--86086  Score: 51
    Period size: 9  Copynumber: 3.3  Consensus size: 9

      86047 AGACCACCAC

                    *
      86057 TACCACTCC
          1 TACCACTCT

                     
      86066 TACCACTCT
          1 TACCACTCT

                     
      86075 TACCACTCT
          1 TACCACTCT

               
      86084 TAC
          1 TAC

      86087 ACCCCTACTA


Statistics
Matches: 20,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
   9   20  1.00

ACGTcount: A:0.23, C:0.47, G:0.00, T:0.30


Consensus pattern (9 bp):   
TACCACTCT

Left flanking sequence: Indices 85557 -- 86056
GAGGTGGACAGTGTGGTTGCGTTGGTTTGTGACACCAGGGGCAACGTGGGAGAGAAGAGGAGAGG
AGAGGAGAGCAATAGGAAGAGCAAGAGGAAGAGCAAGAGAACGAGAGCAAGAGAAGAGAGCAAGG
GATCACAATTAAGGTTATCACCCACTCCACAAAGACACCAGAGGGTGGTGTCATGACGACAACCG
GTGCCATGATCGCCAACCGTTTTTTCTCTGTGTATAGCGAGTTACACCTAATCCGAGCCATCCGC
CTGGTCATGTGTCTGGACCAGCGTGAACCAATCACCACCCCCCGCGGTCCGCCTAGCCAGCCTGG
GCATGCTACGACTCACCGCTAACCGTGTCTACTTACGGAAGTCACCTGATCACACCGCGACCGAT
CCAGCTGGACCCTTTTATGAGCCAACCTAGACCAATCACCACCGCGCAAGCTTCCACCAAACACA
TCCAAGTAGACCACCCCTAGTAGACCACCCATAATAGACCACCAC


Right flanking sequence: Indices 86087 -- 86586
ACCCCTACTAAACCACCCCTAATCACCCCCTCTACCACTCCATGCCCCTATCCCAGATCACCGAT
CTTGATCACCGATCACCTATCACCTTCTTCCCTCCGATCACCTATCACCTTCTTCCTCCGATCAC
CTATCACCTGTCTTCCCCAGTTCCACCATTCCCTCATTCCTCCATTCTTCTCGCCCGCCACGGTG
CTTCCCCACAACCCTACACTCCCCATAGCCTGATTACACCGCCCTCCACCGCCTTGGCCCCGCAA
CCGGCCAGCCATAACTCCGATCGTACCTCGTATAACCCAACGCGAATCAAATCCCGGGAGGACCA
CCAGACCACACAAGGCCAGACACACAAAACCGCCACACCACGCCTACCTCTTCCATTCACCACTC
CACCCCTCCACCCTCCACCGCTCCACATCCCACTCCACCCCACACCACCCACACCACCCACACTC
ATCCCACCCCACACTGACTCAGTTGACTCAGTTGCGAGCCCGCAC



Found at i:86190 original size:25 final size:25

Alignment explanation


    Indices: 86160--86233  Score: 132
    Period size: 25  Copynumber: 3.0  Consensus size: 25

      86150 ATCTTGATCA

                                     
      86160 CCGATCACCTATCACCTTCTTCCCT
          1 CCGATCACCTATCACCTTCTTCCCT

                                     
      86185 CCGATCACCTATCACCTTCTT-CCT
          1 CCGATCACCTATCACCTTCTTCCCT

                                     
      86209 CCGATCACCTATCACCTGTCTTCCC
          1 CCGATCACCTATCACCT-TCTTCCC

      86234 CAGTTCCACC


Statistics
Matches: 47,  Mismatches: 0, Indels: 3
        0.94            0.00        0.06

Matches are distributed among these distances:
  24   20  0.43
  25   25  0.53
  26    2  0.04

ACGTcount: A:0.16, C:0.47, G:0.05, T:0.31


Consensus pattern (25 bp):   
CCGATCACCTATCACCTTCTTCCCT

Left flanking sequence: Indices 85660 -- 86159
GAACGAGAGCAAGAGAAGAGAGCAAGGGATCACAATTAAGGTTATCACCCACTCCACAAAGACAC
CAGAGGGTGGTGTCATGACGACAACCGGTGCCATGATCGCCAACCGTTTTTTCTCTGTGTATAGC
GAGTTACACCTAATCCGAGCCATCCGCCTGGTCATGTGTCTGGACCAGCGTGAACCAATCACCAC
CCCCCGCGGTCCGCCTAGCCAGCCTGGGCATGCTACGACTCACCGCTAACCGTGTCTACTTACGG
AAGTCACCTGATCACACCGCGACCGATCCAGCTGGACCCTTTTATGAGCCAACCTAGACCAATCA
CCACCGCGCAAGCTTCCACCAAACACATCCAAGTAGACCACCCCTAGTAGACCACCCATAATAGA
CCACCACTACCACTCCTACCACTCTTACCACTCTTACACCCCTACTAAACCACCCCTAATCACCC
CCTCTACCACTCCATGCCCCTATCCCAGATCACCGATCTTGATCA


Right flanking sequence: Indices 86234 -- 86733
CAGTTCCACCATTCCCTCATTCCTCCATTCTTCTCGCCCGCCACGGTGCTTCCCCACAACCCTAC
ACTCCCCATAGCCTGATTACACCGCCCTCCACCGCCTTGGCCCCGCAACCGGCCAGCCATAACTC
CGATCGTACCTCGTATAACCCAACGCGAATCAAATCCCGGGAGGACCACCAGACCACACAAGGCC
AGACACACAAAACCGCCACACCACGCCTACCTCTTCCATTCACCACTCCACCCCTCCACCCTCCA
CCGCTCCACATCCCACTCCACCCCACACCACCCACACCACCCACACTCATCCCACCCCACACTGA
CTCAGTTGACTCAGTTGCGAGCCCGCACCCCACCAGCCCACCAATCACAGCACGCCAAGTCTCGA
TCGGCCCATCCGCCCCCCACCCGGGTTCGTCCGCCACCACCACACGTCACCACCCGCCCCACAAC
ACACCCCCCCAACCCACCCACCTCTCGAGCCCACCCAATCGCCCC



Found at i:86494 original size:15 final size:16

Alignment explanation


    Indices: 86469--86502  Score: 52
    Period size: 15  Copynumber: 2.2  Consensus size: 16

      86459 CTCTTCCATT

                            
      86469 CACCACTCCACCCCTC
          1 CACCACTCCACCCCTC

                        *   
      86485 CACC-CTCCACCGCTC
          1 CACCACTCCACCCCTC

               
      86500 CAC
          1 CAC

      86503 ATCCCACTCC


Statistics
Matches: 17,  Mismatches: 1, Indels: 1
        0.89            0.05        0.05

Matches are distributed among these distances:
  15   13  0.76
  16    4  0.24

ACGTcount: A:0.18, C:0.68, G:0.03, T:0.12


Consensus pattern (16 bp):   
CACCACTCCACCCCTC

Left flanking sequence: Indices 85969 -- 86468
CAACCTAGACCAATCACCACCGCGCAAGCTTCCACCAAACACATCCAAGTAGACCACCCCTAGTA
GACCACCCATAATAGACCACCACTACCACTCCTACCACTCTTACCACTCTTACACCCCTACTAAA
CCACCCCTAATCACCCCCTCTACCACTCCATGCCCCTATCCCAGATCACCGATCTTGATCACCGA
TCACCTATCACCTTCTTCCCTCCGATCACCTATCACCTTCTTCCTCCGATCACCTATCACCTGTC
TTCCCCAGTTCCACCATTCCCTCATTCCTCCATTCTTCTCGCCCGCCACGGTGCTTCCCCACAAC
CCTACACTCCCCATAGCCTGATTACACCGCCCTCCACCGCCTTGGCCCCGCAACCGGCCAGCCAT
AACTCCGATCGTACCTCGTATAACCCAACGCGAATCAAATCCCGGGAGGACCACCAGACCACACA
AGGCCAGACACACAAAACCGCCACACCACGCCTACCTCTTCCATT


Right flanking sequence: Indices 86503 -- 87002
ATCCCACTCCACCCCACACCACCCACACCACCCACACTCATCCCACCCCACACTGACTCAGTTGA
CTCAGTTGCGAGCCCGCACCCCACCAGCCCACCAATCACAGCACGCCAAGTCTCGATCGGCCCAT
CCGCCCCCCACCCGGGTTCGTCCGCCACCACCACACGTCACCACCCGCCCCACAACACACCCCCC
CAACCCACCCACCTCTCGAGCCCACCCAATCGCCCCACTATTTCTCGGCGTTACCCCACACTGCG
TTACGTAAGCGAACTCCGAAACGCGCCCGAACACTATAAAAAGGATCGCGCCATATCCCTTGCCA
CCAAAATGTCAACCACTTTTGGCAACGACGAGCACTTGCCGCGGTTGCCGGTGCCGCTGTTGCAG
CTGACGGCGCGCCAGTTGCTCGGCGCGCTCAAACCGTTGCTCCTGGGCGAAGAATTCATGGACGT
GTACGCAGAGCTGGCCCAGTTCGAGGCAGACCCGACGGTCCAGTT




Done.