Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: scaffold71
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 407752
ACGTcount: A:0.22, C:0.28, G:0.27, T:0.23
File 1 of 3
Found at i:58 original size:21 final size:21
Alignment explanation
Indices: 32--75 Score: 79
Period size: 21 Copynumber: 2.1 Consensus size: 21
22 AGGGCCCGTG
32 GGAGGAGGGCCCGAGGGAGGA
1 GGAGGAGGGCCCGAGGGAGGA
*
53 GGAGGAGGGCCCGGGGGAGGA
1 GGAGGAGGGCCCGAGGGAGGA
74 GG
1 GG
76 CGGCGCCGGC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.20, C:0.14, G:0.66, T:0.00
Consensus pattern (21 bp):
GGAGGAGGGCCCGAGGGAGGA
Left flanking sequence: Indices 1 -- 31
GGGAGGAGGGCCCGTGGGAGGAGGGCCCGTG
Right flanking sequence: Indices 76 -- 575
CGGCGCCGGCGCGCGCGGGAGGGAAGGTGTAGGTGCCGTGGGCGGCGGCGCCAAACGAGGTGGCG
AGCGCGGTGGGCGGGGGGTCGAACAGCGCCGGGGGCGCGGCGGGGCGGTCGAGCGCCTGGGCAAA
CGACCCCACCGACGGGGTCGCCAAGTCGGGGTACGACCCCGCGGGGGTGGCGCCGGCGCCGGCAG
CGCCCCGCTTGTACACGTCGCCCAGCGCCGTCACCCGCAACCCGGGGGAGGGCGCGGGGCGGTCG
TGGGGCAGCAGCGGCGGCGGGTCCAGCGCCGCGCGCACCGGGGGCGGGGGCGTCGGGCGCAGCAA
GTTGAGCAGCAAGTTCTTCATGTTCCTCGACGAGGTCAACAGCAACGGGCGCTTCAGGTGCTTGG
GCAGGTAGTTGACGAGCCCGGGCGGCAGCAACAGCAGCGCCAGGCCCGCCAGCAGCACCAGCAGC
GCCAGCAGCACCAGCGAGATCAGCACCTTGTCGGCCAGGGCCCGG
Found at i:74 original size:15 final size:15
Alignment explanation
Indices: 1--54 Score: 99
Period size: 15 Copynumber: 3.6 Consensus size: 15
1 GGGAGGAGGGCCCGT
1 GGGAGGAGGGCCCGT
16 GGGAGGAGGGCCCGT
1 GGGAGGAGGGCCCGT
*
31 GGGAGGAGGGCCCGA
1 GGGAGGAGGGCCCGT
46 GGGAGGAGG
1 GGGAGGAGG
55 AGGAGGGCCC
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
15 38 1.00
ACGTcount: A:0.17, C:0.17, G:0.63, T:0.04
Consensus pattern (15 bp):
GGGAGGAGGGCCCGT
Left flanking sequence: None
Right flanking sequence: Indices 55 -- 554
AGGAGGGCCCGGGGGAGGAGGCGGCGCCGGCGCGCGCGGGAGGGAAGGTGTAGGTGCCGTGGGCG
GCGGCGCCAAACGAGGTGGCGAGCGCGGTGGGCGGGGGGTCGAACAGCGCCGGGGGCGCGGCGGG
GCGGTCGAGCGCCTGGGCAAACGACCCCACCGACGGGGTCGCCAAGTCGGGGTACGACCCCGCGG
GGGTGGCGCCGGCGCCGGCAGCGCCCCGCTTGTACACGTCGCCCAGCGCCGTCACCCGCAACCCG
GGGGAGGGCGCGGGGCGGTCGTGGGGCAGCAGCGGCGGCGGGTCCAGCGCCGCGCGCACCGGGGG
CGGGGGCGTCGGGCGCAGCAAGTTGAGCAGCAAGTTCTTCATGTTCCTCGACGAGGTCAACAGCA
ACGGGCGCTTCAGGTGCTTGGGCAGGTAGTTGACGAGCCCGGGCGGCAGCAACAGCAGCGCCAGG
CCCGCCAGCAGCACCAGCAGCGCCAGCAGCACCAGCGAGATCAGC
Found at i:520 original size:18 final size:19
Alignment explanation
Indices: 497--544 Score: 64
Period size: 18 Copynumber: 2.6 Consensus size: 19
487 GCGGCAGCAA
*
497 CAGCAGCGCCAGGC-CCGC
1 CAGCAGCACCAGGCACCGC
*
515 CAGCAGCACCA-GCAGCGC
1 CAGCAGCACCAGGCACCGC
533 CAGCAGCACCAG
1 CAGCAGCACCAG
545 CGAGATCAGC
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
17 2 0.08
18 24 0.92
ACGTcount: A:0.25, C:0.46, G:0.29, T:0.00
Consensus pattern (19 bp):
CAGCAGCACCAGGCACCGC
Left flanking sequence: Indices 1 -- 496
GGGAGGAGGGCCCGTGGGAGGAGGGCCCGTGGGAGGAGGGCCCGAGGGAGGAGGAGGAGGGCCCG
GGGGAGGAGGCGGCGCCGGCGCGCGCGGGAGGGAAGGTGTAGGTGCCGTGGGCGGCGGCGCCAAA
CGAGGTGGCGAGCGCGGTGGGCGGGGGGTCGAACAGCGCCGGGGGCGCGGCGGGGCGGTCGAGCG
CCTGGGCAAACGACCCCACCGACGGGGTCGCCAAGTCGGGGTACGACCCCGCGGGGGTGGCGCCG
GCGCCGGCAGCGCCCCGCTTGTACACGTCGCCCAGCGCCGTCACCCGCAACCCGGGGGAGGGCGC
GGGGCGGTCGTGGGGCAGCAGCGGCGGCGGGTCCAGCGCCGCGCGCACCGGGGGCGGGGGCGTCG
GGCGCAGCAAGTTGAGCAGCAAGTTCTTCATGTTCCTCGACGAGGTCAACAGCAACGGGCGCTTC
AGGTGCTTGGGCAGGTAGTTGACGAGCCCGGGCGGCAGCAA
Right flanking sequence: Indices 545 -- 1044
CGAGATCAGCACCTTGTCGGCCAGGGCCCGGGGCAGCAGCATCACCTTCGGGGGCGGGCGCAACT
GGGGCACCGGGGCGTCGTCGCCGCCGCCGCCGCTGGCGACGAAGGGATTGGACATCCGGGAGGGG
GAGGGCGGCTGGGCGGTGTGGAGGAGTATGGTGGTGGGGAGGAACGGGGGAGGGTGGGGCGAGAA
AGAGGAGCGCGGGGGCGGGCGCGGGGCCTAGGACGGGTGGGCTAGGACGGCGCGGACGCGGGGGT
GGGCGCTAGACGCGGGGATGGGCGCTAGAACACTAGGACGGGCGCTAGAACGGGCGCTAGAACAC
GAGGATGGCGCTAGAACGCGAGGATGGGCGCGGGTTGGCACCGGTAGGCACTTGGGCGTGGGGGT
CTGGGGCGCCAGAGGGAGCGCGGAGGAGGGTCGGGCAGCTACGCGGGAGCAGGGGGGTGTAGCGG
GCGCGGGAGCAGGGTTCGCGCGGGGGACAGGGGTGGCGCCGGGGC
Found at i:526 original size:9 final size:9
Alignment explanation
Indices: 514--545 Score: 55
Period size: 9 Copynumber: 3.6 Consensus size: 9
504 GCCAGGCCCG
514 CCAGCAGCA
1 CCAGCAGCA
*
523 CCAGCAGCG
1 CCAGCAGCA
532 CCAGCAGCA
1 CCAGCAGCA
541 CCAGC
1 CCAGC
546 GAGATCAGCA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.28, C:0.47, G:0.25, T:0.00
Consensus pattern (9 bp):
CCAGCAGCA
Left flanking sequence: Indices 14 -- 513
GTGGGAGGAGGGCCCGTGGGAGGAGGGCCCGAGGGAGGAGGAGGAGGGCCCGGGGGAGGAGGCGG
CGCCGGCGCGCGCGGGAGGGAAGGTGTAGGTGCCGTGGGCGGCGGCGCCAAACGAGGTGGCGAGC
GCGGTGGGCGGGGGGTCGAACAGCGCCGGGGGCGCGGCGGGGCGGTCGAGCGCCTGGGCAAACGA
CCCCACCGACGGGGTCGCCAAGTCGGGGTACGACCCCGCGGGGGTGGCGCCGGCGCCGGCAGCGC
CCCGCTTGTACACGTCGCCCAGCGCCGTCACCCGCAACCCGGGGGAGGGCGCGGGGCGGTCGTGG
GGCAGCAGCGGCGGCGGGTCCAGCGCCGCGCGCACCGGGGGCGGGGGCGTCGGGCGCAGCAAGTT
GAGCAGCAAGTTCTTCATGTTCCTCGACGAGGTCAACAGCAACGGGCGCTTCAGGTGCTTGGGCA
GGTAGTTGACGAGCCCGGGCGGCAGCAACAGCAGCGCCAGGCCCG
Right flanking sequence: Indices 546 -- 1045
GAGATCAGCACCTTGTCGGCCAGGGCCCGGGGCAGCAGCATCACCTTCGGGGGCGGGCGCAACTG
GGGCACCGGGGCGTCGTCGCCGCCGCCGCCGCTGGCGACGAAGGGATTGGACATCCGGGAGGGGG
AGGGCGGCTGGGCGGTGTGGAGGAGTATGGTGGTGGGGAGGAACGGGGGAGGGTGGGGCGAGAAA
GAGGAGCGCGGGGGCGGGCGCGGGGCCTAGGACGGGTGGGCTAGGACGGCGCGGACGCGGGGGTG
GGCGCTAGACGCGGGGATGGGCGCTAGAACACTAGGACGGGCGCTAGAACGGGCGCTAGAACACG
AGGATGGCGCTAGAACGCGAGGATGGGCGCGGGTTGGCACCGGTAGGCACTTGGGCGTGGGGGTC
TGGGGCGCCAGAGGGAGCGCGGAGGAGGGTCGGGCAGCTACGCGGGAGCAGGGGGGTGTAGCGGG
CGCGGGAGCAGGGTTCGCGCGGGGGACAGGGGTGGCGCCGGGGCT
Found at i:818 original size:19 final size:19
Alignment explanation
Indices: 794--833 Score: 71
Period size: 19 Copynumber: 2.1 Consensus size: 19
784 GGACGGCGCG
*
794 GACGCGGGGGTGGGCGCTA
1 GACGCGGGGATGGGCGCTA
813 GACGCGGGGATGGGCGCTA
1 GACGCGGGGATGGGCGCTA
832 GA
1 GA
834 ACACTAGGAC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.15, C:0.20, G:0.55, T:0.10
Consensus pattern (19 bp):
GACGCGGGGATGGGCGCTA
Left flanking sequence: Indices 294 -- 793
AGCGCCGTCACCCGCAACCCGGGGGAGGGCGCGGGGCGGTCGTGGGGCAGCAGCGGCGGCGGGTC
CAGCGCCGCGCGCACCGGGGGCGGGGGCGTCGGGCGCAGCAAGTTGAGCAGCAAGTTCTTCATGT
TCCTCGACGAGGTCAACAGCAACGGGCGCTTCAGGTGCTTGGGCAGGTAGTTGACGAGCCCGGGC
GGCAGCAACAGCAGCGCCAGGCCCGCCAGCAGCACCAGCAGCGCCAGCAGCACCAGCGAGATCAG
CACCTTGTCGGCCAGGGCCCGGGGCAGCAGCATCACCTTCGGGGGCGGGCGCAACTGGGGCACCG
GGGCGTCGTCGCCGCCGCCGCCGCTGGCGACGAAGGGATTGGACATCCGGGAGGGGGAGGGCGGC
TGGGCGGTGTGGAGGAGTATGGTGGTGGGGAGGAACGGGGGAGGGTGGGGCGAGAAAGAGGAGCG
CGGGGGCGGGCGCGGGGCCTAGGACGGGTGGGCTAGGACGGCGCG
Right flanking sequence: Indices 834 -- 1333
ACACTAGGACGGGCGCTAGAACGGGCGCTAGAACACGAGGATGGCGCTAGAACGCGAGGATGGGC
GCGGGTTGGCACCGGTAGGCACTTGGGCGTGGGGGTCTGGGGCGCCAGAGGGAGCGCGGAGGAGG
GTCGGGCAGCTACGCGGGAGCAGGGGGGTGTAGCGGGCGCGGGAGCAGGGTTCGCGCGGGGGACA
GGGGTGGCGCCGGGGCTGGGGGAGGAACGGTGTGTGGGCGAGGTGGTGCCAACTGCTGCGAAGTG
CGTGCGAGCGAGGTGCGAGCTCGGTGCGGGACCTTGCGATTTGTGTAGGATCAGAAAAACTAAAA
AATAAACGCACAAACGCGAGCACGACGTGGTGGGGGGGCCAGCGGGGCGGTGGCGGGCCCGCGGC
GGCGCGGGGCAGTGCCACCCGCTCGGGCAGTGCCCGCACAGGTGCCTCGTGGCGGCGGCCGCGGC
GCTGGCCCCGTGCCGCCCCGCTGGTCGGCCCATCAGCCCACCGTG
Found at i:857 original size:12 final size:12
Alignment explanation
Indices: 837--867 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
827 CGCTAGAACA
*
837 CTAGGACGGGCG
1 CTAGAACGGGCG
849 CTAGAACGGGCG
1 CTAGAACGGGCG
861 CTAGAAC
1 CTAGAAC
868 ACGAGGATGG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.26, C:0.26, G:0.39, T:0.10
Consensus pattern (12 bp):
CTAGAACGGGCG
Left flanking sequence: Indices 337 -- 836
GGGGCAGCAGCGGCGGCGGGTCCAGCGCCGCGCGCACCGGGGGCGGGGGCGTCGGGCGCAGCAAG
TTGAGCAGCAAGTTCTTCATGTTCCTCGACGAGGTCAACAGCAACGGGCGCTTCAGGTGCTTGGG
CAGGTAGTTGACGAGCCCGGGCGGCAGCAACAGCAGCGCCAGGCCCGCCAGCAGCACCAGCAGCG
CCAGCAGCACCAGCGAGATCAGCACCTTGTCGGCCAGGGCCCGGGGCAGCAGCATCACCTTCGGG
GGCGGGCGCAACTGGGGCACCGGGGCGTCGTCGCCGCCGCCGCCGCTGGCGACGAAGGGATTGGA
CATCCGGGAGGGGGAGGGCGGCTGGGCGGTGTGGAGGAGTATGGTGGTGGGGAGGAACGGGGGAG
GGTGGGGCGAGAAAGAGGAGCGCGGGGGCGGGCGCGGGGCCTAGGACGGGTGGGCTAGGACGGCG
CGGACGCGGGGGTGGGCGCTAGACGCGGGGATGGGCGCTAGAACA
Right flanking sequence: Indices 868 -- 1367
ACGAGGATGGCGCTAGAACGCGAGGATGGGCGCGGGTTGGCACCGGTAGGCACTTGGGCGTGGGG
GTCTGGGGCGCCAGAGGGAGCGCGGAGGAGGGTCGGGCAGCTACGCGGGAGCAGGGGGGTGTAGC
GGGCGCGGGAGCAGGGTTCGCGCGGGGGACAGGGGTGGCGCCGGGGCTGGGGGAGGAACGGTGTG
TGGGCGAGGTGGTGCCAACTGCTGCGAAGTGCGTGCGAGCGAGGTGCGAGCTCGGTGCGGGACCT
TGCGATTTGTGTAGGATCAGAAAAACTAAAAAATAAACGCACAAACGCGAGCACGACGTGGTGGG
GGGGCCAGCGGGGCGGTGGCGGGCCCGCGGCGGCGCGGGGCAGTGCCACCCGCTCGGGCAGTGCC
CGCACAGGTGCCTCGTGGCGGCGGCCGCGGCGCTGGCCCCGTGCCGCCCCGCTGGTCGGCCCATC
AGCCCACCGTGACTTGTTTCAACGGCATATGTGTCCTGCACACGG
Found at i:860 original size:32 final size:31
Alignment explanation
Indices: 824--887 Score: 101
Period size: 32 Copynumber: 2.0 Consensus size: 31
814 ACGCGGGGAT
*
824 GGGCGCTAGAACACTAGGACGGGCGCTAGAAC
1 GGGCGCTAGAACACGAGGA-GGGCGCTAGAAC
*
856 GGGCGCTAGAACACGAGGATGGCGCTAGAAC
1 GGGCGCTAGAACACGAGGAGGGCGCTAGAAC
887 G
1 G
888 CGAGGATGGG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
31 12 0.40
32 18 0.60
ACGTcount: A:0.28, C:0.23, G:0.39, T:0.09
Consensus pattern (31 bp):
GGGCGCTAGAACACGAGGAGGGCGCTAGAAC
Left flanking sequence: Indices 324 -- 823
GCGGGGCGGTCGTGGGGCAGCAGCGGCGGCGGGTCCAGCGCCGCGCGCACCGGGGGCGGGGGCGT
CGGGCGCAGCAAGTTGAGCAGCAAGTTCTTCATGTTCCTCGACGAGGTCAACAGCAACGGGCGCT
TCAGGTGCTTGGGCAGGTAGTTGACGAGCCCGGGCGGCAGCAACAGCAGCGCCAGGCCCGCCAGC
AGCACCAGCAGCGCCAGCAGCACCAGCGAGATCAGCACCTTGTCGGCCAGGGCCCGGGGCAGCAG
CATCACCTTCGGGGGCGGGCGCAACTGGGGCACCGGGGCGTCGTCGCCGCCGCCGCCGCTGGCGA
CGAAGGGATTGGACATCCGGGAGGGGGAGGGCGGCTGGGCGGTGTGGAGGAGTATGGTGGTGGGG
AGGAACGGGGGAGGGTGGGGCGAGAAAGAGGAGCGCGGGGGCGGGCGCGGGGCCTAGGACGGGTG
GGCTAGGACGGCGCGGACGCGGGGGTGGGCGCTAGACGCGGGGAT
Right flanking sequence: Indices 888 -- 1387
CGAGGATGGGCGCGGGTTGGCACCGGTAGGCACTTGGGCGTGGGGGTCTGGGGCGCCAGAGGGAG
CGCGGAGGAGGGTCGGGCAGCTACGCGGGAGCAGGGGGGTGTAGCGGGCGCGGGAGCAGGGTTCG
CGCGGGGGACAGGGGTGGCGCCGGGGCTGGGGGAGGAACGGTGTGTGGGCGAGGTGGTGCCAACT
GCTGCGAAGTGCGTGCGAGCGAGGTGCGAGCTCGGTGCGGGACCTTGCGATTTGTGTAGGATCAG
AAAAACTAAAAAATAAACGCACAAACGCGAGCACGACGTGGTGGGGGGGCCAGCGGGGCGGTGGC
GGGCCCGCGGCGGCGCGGGGCAGTGCCACCCGCTCGGGCAGTGCCCGCACAGGTGCCTCGTGGCG
GCGGCCGCGGCGCTGGCCCCGTGCCGCCCCGCTGGTCGGCCCATCAGCCCACCGTGACTTGTTTC
AACGGCATATGTGTCCTGCACACGGAAAGTTTCATAATTGCGGCC
Found at i:881 original size:19 final size:19
Alignment explanation
Indices: 857--896 Score: 71
Period size: 19 Copynumber: 2.1 Consensus size: 19
847 CGCTAGAACG
857 GGCGCTAGAACACGAGGAT
1 GGCGCTAGAACACGAGGAT
*
876 GGCGCTAGAACGCGAGGAT
1 GGCGCTAGAACACGAGGAT
895 GG
1 GG
897 GCGCGGGTTG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.28, C:0.20, G:0.42, T:0.10
Consensus pattern (19 bp):
GGCGCTAGAACACGAGGAT
Left flanking sequence: Indices 357 -- 856
TCCAGCGCCGCGCGCACCGGGGGCGGGGGCGTCGGGCGCAGCAAGTTGAGCAGCAAGTTCTTCAT
GTTCCTCGACGAGGTCAACAGCAACGGGCGCTTCAGGTGCTTGGGCAGGTAGTTGACGAGCCCGG
GCGGCAGCAACAGCAGCGCCAGGCCCGCCAGCAGCACCAGCAGCGCCAGCAGCACCAGCGAGATC
AGCACCTTGTCGGCCAGGGCCCGGGGCAGCAGCATCACCTTCGGGGGCGGGCGCAACTGGGGCAC
CGGGGCGTCGTCGCCGCCGCCGCCGCTGGCGACGAAGGGATTGGACATCCGGGAGGGGGAGGGCG
GCTGGGCGGTGTGGAGGAGTATGGTGGTGGGGAGGAACGGGGGAGGGTGGGGCGAGAAAGAGGAG
CGCGGGGGCGGGCGCGGGGCCTAGGACGGGTGGGCTAGGACGGCGCGGACGCGGGGGTGGGCGCT
AGACGCGGGGATGGGCGCTAGAACACTAGGACGGGCGCTAGAACG
Right flanking sequence: Indices 897 -- 1396
GCGCGGGTTGGCACCGGTAGGCACTTGGGCGTGGGGGTCTGGGGCGCCAGAGGGAGCGCGGAGGA
GGGTCGGGCAGCTACGCGGGAGCAGGGGGGTGTAGCGGGCGCGGGAGCAGGGTTCGCGCGGGGGA
CAGGGGTGGCGCCGGGGCTGGGGGAGGAACGGTGTGTGGGCGAGGTGGTGCCAACTGCTGCGAAG
TGCGTGCGAGCGAGGTGCGAGCTCGGTGCGGGACCTTGCGATTTGTGTAGGATCAGAAAAACTAA
AAAATAAACGCACAAACGCGAGCACGACGTGGTGGGGGGGCCAGCGGGGCGGTGGCGGGCCCGCG
GCGGCGCGGGGCAGTGCCACCCGCTCGGGCAGTGCCCGCACAGGTGCCTCGTGGCGGCGGCCGCG
GCGCTGGCCCCGTGCCGCCCCGCTGGTCGGCCCATCAGCCCACCGTGACTTGTTTCAACGGCATA
TGTGTCCTGCACACGGAAAGTTTCATAATTGCGGCCCGGGCTTCA
Found at i:2156 original size:21 final size:22
Alignment explanation
Indices: 2118--2170 Score: 81
Period size: 21 Copynumber: 2.5 Consensus size: 22
2108 ACGCTGTCTA
*
2118 TGCTGTCTTTACCCTTTTTCTC
1 TGCTGTCTCTACCCTTTTTCTC
2140 TGCTGTCTCTA-CCTTTTTCTC
1 TGCTGTCTCTACCCTTTTTCTC
*
2161 CGCTGTCTCT
1 TGCTGTCTCT
2171 TTTCTCCGCT
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
21 19 0.66
22 10 0.34
ACGTcount: A:0.04, C:0.34, G:0.11, T:0.51
Consensus pattern (22 bp):
TGCTGTCTCTACCCTTTTTCTC
Left flanking sequence: Indices 1618 -- 2117
AAAGCCTGCATCCACCGTCGCCAACGCAGCGGGCCTGAGAGTAGTGAGGGGCCGGTTCCGGCGCA
CGGGGCGCGCTGCGGGGCGTCGGGCGCGGTGTCAGGTGGCTAGTGCCGGCTTCGCTGTCTCCTGG
GTGTTCGCTGTCACTGCCTGGGCCCTCCCGGCCGCGGTCCCAGGGTCTGATTGGTTGCAACCGGT
GTCGTGATTCGTCCTGCAGACAGCCCGCCTCATAATATCGATCAAGGCGGGTACCCCTAGGAAAA
TAAGGTTGCAAACGCCTACTACCGTCGCTGGCGAGCGGGCCCGCAGCGACGCGTCAGACGGGGGC
TCCCACGACGAGGGTGGCTAGGTTTTGTTCTTAGGTGGCAGTTTGGAGTCTGTCTCGGTGCTACC
TGCACACCCCTTCCGTTGACATGCTGACGTCGTAATAAAGTTTATCGCCTTAGCGCTGGCCCTAC
TACGTGACTAGTGTACAGTTTTCTTTACGCTGTCTACGCTGTCTA
Right flanking sequence: Indices 2171 -- 2670
TTTCTCCGCTGTCTCTTTTCTCCGCTCTCTACCTCTTCTGTCTGAGCCCATATTAACCGTGCCGG
GCTTGCAGCCAACGGCGCATCACGCCACCCCGTCAGGTTTGGGTTGGTGCTCGCGATGGTTGGCG
GGACAACCGCCGGTTGCACGGTGGGGCCAGCGACGGGGGGATGGCCACCGGTTGCAAGCAACCGT
GGGCTGCCAGGGGTGTCTCGGGCCGTCGCGTGGACGTGTCGACGTGCATATTTTTCGCCCGATCG
GGAAGGAAGACCGAGCTTCGCGCCCAAAACGGCAATGGCCCACCCACAACGGTCGGGCTCGCTAA
CGAGGATTGTTGAGGACGCGGGCTCGGAAAATACGAGTGGAGGGGAGGGGGTGGGAGGTGGAGGT
GTAGTGGAGGTGTAGATGTGTGTGGGTGGGTGTGGTGGAGAATGGATGGGTGGGTATAAAGGGTA
GATGTGTGGATTGGTGTGGATTGGTAGTGGAATGCGTGTGGGTGA
Found at i:2175 original size:16 final size:16
Alignment explanation
Indices: 2154--2196 Score: 86
Period size: 16 Copynumber: 2.7 Consensus size: 16
2144 GTCTCTACCT
2154 TTTTCTCCGCTGTCTC
1 TTTTCTCCGCTGTCTC
2170 TTTTCTCCGCTGTCTC
1 TTTTCTCCGCTGTCTC
2186 TTTTCTCCGCT
1 TTTTCTCCGCT
2197 CTCTACCTCT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 27 1.00
ACGTcount: A:0.00, C:0.37, G:0.12, T:0.51
Consensus pattern (16 bp):
TTTTCTCCGCTGTCTC
Left flanking sequence: Indices 1654 -- 2153
GAGAGTAGTGAGGGGCCGGTTCCGGCGCACGGGGCGCGCTGCGGGGCGTCGGGCGCGGTGTCAGG
TGGCTAGTGCCGGCTTCGCTGTCTCCTGGGTGTTCGCTGTCACTGCCTGGGCCCTCCCGGCCGCG
GTCCCAGGGTCTGATTGGTTGCAACCGGTGTCGTGATTCGTCCTGCAGACAGCCCGCCTCATAAT
ATCGATCAAGGCGGGTACCCCTAGGAAAATAAGGTTGCAAACGCCTACTACCGTCGCTGGCGAGC
GGGCCCGCAGCGACGCGTCAGACGGGGGCTCCCACGACGAGGGTGGCTAGGTTTTGTTCTTAGGT
GGCAGTTTGGAGTCTGTCTCGGTGCTACCTGCACACCCCTTCCGTTGACATGCTGACGTCGTAAT
AAAGTTTATCGCCTTAGCGCTGGCCCTACTACGTGACTAGTGTACAGTTTTCTTTACGCTGTCTA
CGCTGTCTATGCTGTCTTTACCCTTTTTCTCTGCTGTCTCTACCT
Right flanking sequence: Indices 2197 -- 2696
CTCTACCTCTTCTGTCTGAGCCCATATTAACCGTGCCGGGCTTGCAGCCAACGGCGCATCACGCC
ACCCCGTCAGGTTTGGGTTGGTGCTCGCGATGGTTGGCGGGACAACCGCCGGTTGCACGGTGGGG
CCAGCGACGGGGGGATGGCCACCGGTTGCAAGCAACCGTGGGCTGCCAGGGGTGTCTCGGGCCGT
CGCGTGGACGTGTCGACGTGCATATTTTTCGCCCGATCGGGAAGGAAGACCGAGCTTCGCGCCCA
AAACGGCAATGGCCCACCCACAACGGTCGGGCTCGCTAACGAGGATTGTTGAGGACGCGGGCTCG
GAAAATACGAGTGGAGGGGAGGGGGTGGGAGGTGGAGGTGTAGTGGAGGTGTAGATGTGTGTGGG
TGGGTGTGGTGGAGAATGGATGGGTGGGTATAAAGGGTAGATGTGTGGATTGGTGTGGATTGGTA
GTGGAATGCGTGTGGGTGAAATGAATAGTGTTGGTAAATACGCGT
Found at i:2953 original size:9 final size:9
Alignment explanation
Indices: 2939--2976 Score: 76
Period size: 9 Copynumber: 4.2 Consensus size: 9
2929 GCTGTGGATA
2939 GGTGAAGTG
1 GGTGAAGTG
2948 GGTGAAGTG
1 GGTGAAGTG
2957 GGTGAAGTG
1 GGTGAAGTG
2966 GGTGAAGTG
1 GGTGAAGTG
2975 GG
1 GG
2977 AGTGGGGGTA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 29 1.00
ACGTcount: A:0.21, C:0.00, G:0.58, T:0.21
Consensus pattern (9 bp):
GGTGAAGTG
Left flanking sequence: Indices 2439 -- 2938
GACCGAGCTTCGCGCCCAAAACGGCAATGGCCCACCCACAACGGTCGGGCTCGCTAACGAGGATT
GTTGAGGACGCGGGCTCGGAAAATACGAGTGGAGGGGAGGGGGTGGGAGGTGGAGGTGTAGTGGA
GGTGTAGATGTGTGTGGGTGGGTGTGGTGGAGAATGGATGGGTGGGTATAAAGGGTAGATGTGTG
GATTGGTGTGGATTGGTAGTGGAATGCGTGTGGGTGAAATGAATAGTGTTGGTAAATACGCGTAG
ACTAAGTTTTTTGTTTACATTCTTTTGCAGAATATTTGTAATAAGGTATAACAGAAGGAATTCAC
GGGATCCACCGAGGCTAGCAGGCTTATCAGATCCATCAGATCGCTAGCGGTTTTAGTCCGACTAA
ACGGCGGGAAATCCCGGGGTAGCCAGGGGACCCGGGGTAACAATGGGTTTGACGTTATTATTGGT
ACCTGAGTCACGAGACGGCTAAGAGTGTGGCTGTGGCTGTGGATA
Right flanking sequence: Indices 2977 -- 3476
AGTGGGGGTAAAATGGGGGTTAAGTGTGGGTTGAGGGTGGGTTGAAGTGTAAGTTGAAGTGTGGG
CTGGAGTGTAGGGTGAGTATGGCTTCAAGTGGGTGTGGCTTTCCTCACAAATGACTTGAATACCC
TCTGATTCGATATCTGTTGGGTTCTCGCACATGGGACATTTTAGAACCATTCATGCAACGCTGCA
ACCGGTGGCTGCAACCATGAGTTCATGATTGCAGTCATCAGCGACACAGTAGACGCTACAGGGTG
TGTCAAGAATCTCTGGTCATTGCTTACCACTTCGCCCACATTTATAATTCTACTCCAGACCACCT
GTGCTCTACCTCCACACCACCCGTGCTCTTTTTGCTCCAACGTACAGCCTGGTACGACTCAGCAG
TCCAGCACCATGCGATGAGCCCCGGCGGTTGTAGACACGCTACCTCAGACACTTCTCGCCACCAA
TCGAATGATCCTCCGATGCGTCAATGACACTAACCATCTAATTAG
Found at i:3007 original size:11 final size:12
Alignment explanation
Indices: 2993--3055 Score: 58
Period size: 12 Copynumber: 5.3 Consensus size: 12
2983 GGTAAAATGG
2993 GGGTT-AAGTGT
1 GGGTTGAAGTGT
*
3004 GGGTTG-AGGGT
1 GGGTTGAAGTGT
3015 GGGTTGAAGTGT
1 GGGTTGAAGTGT
**
3027 AAGTTGAAGTGT
1 GGGTTGAAGTGT
* *
3039 GGGCTGGAGTGT
1 GGGTTGAAGTGT
3051 AGGGT
1 -GGGT
3056 GAGTATGGCT
Statistics
Matches: 40, Mismatches: 9, Indels: 4
0.75 0.17 0.08
Matches are distributed among these distances:
11 15 0.38
12 22 0.55
13 3 0.08
ACGTcount: A:0.17, C:0.02, G:0.51, T:0.30
Consensus pattern (12 bp):
GGGTTGAAGTGT
Left flanking sequence: Indices 2493 -- 2992
TAACGAGGATTGTTGAGGACGCGGGCTCGGAAAATACGAGTGGAGGGGAGGGGGTGGGAGGTGGA
GGTGTAGTGGAGGTGTAGATGTGTGTGGGTGGGTGTGGTGGAGAATGGATGGGTGGGTATAAAGG
GTAGATGTGTGGATTGGTGTGGATTGGTAGTGGAATGCGTGTGGGTGAAATGAATAGTGTTGGTA
AATACGCGTAGACTAAGTTTTTTGTTTACATTCTTTTGCAGAATATTTGTAATAAGGTATAACAG
AAGGAATTCACGGGATCCACCGAGGCTAGCAGGCTTATCAGATCCATCAGATCGCTAGCGGTTTT
AGTCCGACTAAACGGCGGGAAATCCCGGGGTAGCCAGGGGACCCGGGGTAACAATGGGTTTGACG
TTATTATTGGTACCTGAGTCACGAGACGGCTAAGAGTGTGGCTGTGGCTGTGGATAGGTGAAGTG
GGTGAAGTGGGTGAAGTGGGTGAAGTGGGAGTGGGGGTAAAATGG
Right flanking sequence: Indices 3056 -- 3555
GAGTATGGCTTCAAGTGGGTGTGGCTTTCCTCACAAATGACTTGAATACCCTCTGATTCGATATC
TGTTGGGTTCTCGCACATGGGACATTTTAGAACCATTCATGCAACGCTGCAACCGGTGGCTGCAA
CCATGAGTTCATGATTGCAGTCATCAGCGACACAGTAGACGCTACAGGGTGTGTCAAGAATCTCT
GGTCATTGCTTACCACTTCGCCCACATTTATAATTCTACTCCAGACCACCTGTGCTCTACCTCCA
CACCACCCGTGCTCTTTTTGCTCCAACGTACAGCCTGGTACGACTCAGCAGTCCAGCACCATGCG
ATGAGCCCCGGCGGTTGTAGACACGCTACCTCAGACACTTCTCGCCACCAATCGAATGATCCTCC
GATGCGTCAATGACACTAACCATCTAATTAGTTCACGAGTCACCACGCAAGCACGAACCACGCAA
GCACCCCATAGCCCCTTACAGCACCGCACTTGAGGCGACCGGTTT
Found at i:3315 original size:22 final size:21
Alignment explanation
Indices: 3285--3330 Score: 65
Period size: 22 Copynumber: 2.1 Consensus size: 21
3275 CATTTATAAT
* *
3285 TCTACTCCAGACCACCTGTGC
1 TCTACTCCACACCACCCGTGC
3306 TCTACCTCCACACCACCCGTGC
1 TCTA-CTCCACACCACCCGTGC
3328 TCT
1 TCT
3331 TTTTGCTCCA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 4 0.18
22 18 0.82
ACGTcount: A:0.17, C:0.48, G:0.11, T:0.24
Consensus pattern (21 bp):
TCTACTCCACACCACCCGTGC
Left flanking sequence: Indices 2785 -- 3284
GCTTATCAGATCCATCAGATCGCTAGCGGTTTTAGTCCGACTAAACGGCGGGAAATCCCGGGGTA
GCCAGGGGACCCGGGGTAACAATGGGTTTGACGTTATTATTGGTACCTGAGTCACGAGACGGCTA
AGAGTGTGGCTGTGGCTGTGGATAGGTGAAGTGGGTGAAGTGGGTGAAGTGGGTGAAGTGGGAGT
GGGGGTAAAATGGGGGTTAAGTGTGGGTTGAGGGTGGGTTGAAGTGTAAGTTGAAGTGTGGGCTG
GAGTGTAGGGTGAGTATGGCTTCAAGTGGGTGTGGCTTTCCTCACAAATGACTTGAATACCCTCT
GATTCGATATCTGTTGGGTTCTCGCACATGGGACATTTTAGAACCATTCATGCAACGCTGCAACC
GGTGGCTGCAACCATGAGTTCATGATTGCAGTCATCAGCGACACAGTAGACGCTACAGGGTGTGT
CAAGAATCTCTGGTCATTGCTTACCACTTCGCCCACATTTATAAT
Right flanking sequence: Indices 3331 -- 3830
TTTTGCTCCAACGTACAGCCTGGTACGACTCAGCAGTCCAGCACCATGCGATGAGCCCCGGCGGT
TGTAGACACGCTACCTCAGACACTTCTCGCCACCAATCGAATGATCCTCCGATGCGTCAATGACA
CTAACCATCTAATTAGTTCACGAGTCACCACGCAAGCACGAACCACGCAAGCACCCCATAGCCCC
TTACAGCACCGCACTTGAGGCGACCGGTTTAGCTTTACGAACGGTAGACACCGACAAATATTACC
CCAAGTGGTAAATAATACAACGCACCACTGGCTGCAACGAAGCTCAGAACAATTTATTGTATTTA
ACGACGGTACGTGTCTTTGCTCGATGTTTTTACGAGCCGTTGTTGATTAGAGAGATTGTTGAAGT
GTTCTTCGCAAGCCAATGAAACATGTTCAACACAAGGCAGTGAACATTCTACAGACTAGAGACAA
AACGATGAAGACCCTGCCAGGTCGAAACCTGACGCCTACGTTGTT
Found at i:4401 original size:14 final size:14
Alignment explanation
Indices: 4382--4424 Score: 68
Period size: 14 Copynumber: 3.1 Consensus size: 14
4372 ACTTCCTCAT
4382 CCCAAGCCAATGAA
1 CCCAAGCCAATGAA
4396 CCCAAGCCAATGAA
1 CCCAAGCCAATGAA
* *
4410 CTCAATCCAATGAA
1 CCCAAGCCAATGAA
4424 C
1 C
4425 TTTTTCAGCT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
14 27 1.00
ACGTcount: A:0.42, C:0.35, G:0.12, T:0.12
Consensus pattern (14 bp):
CCCAAGCCAATGAA
Left flanking sequence: Indices 3882 -- 4381
ATGAACACTTGCTCACCCCGAGCCAGTACAGTCGAAGAGGCAAACTATGAAGACCTTGCCCAAGT
CAAAACGGACGCCAAATCTACATGGTTTAATCCATTGGGATGATTACCCGGTGCTTGTTAACACT
TGCTCAACCCGCGATTAACCTACACCCTGGACTAAACTTTGAAGACCCTGCCCAAGTAACCTGAC
GCTCAAACCTACGTTGTTAATTTCATTGACTAATTAGACTACCCAATTAACTTCCTCAACCCAAG
CCAGTGAACATTAAACATCAGGTCAAATCCCGACGCCAAACCTACATTGTTGATTCATTGACCGA
TTAGAGAGCTCGTTAACACGTCCCCAACCCAACCCAATGAACACTTGCTTATCCCAAGCCAGTGA
ACATTCTACAACCTGGAGAAACTATAAGGACCGTTGCCCAGGTCGAACGCCAAACCTGCTTTGTT
ATCATCATTGTTTGATTATCCGGTGCTTGTTATACACTTCCTCAT
Right flanking sequence: Indices 4425 -- 4924
TTTTTCAGCTGGACAAACTATCAAGACCCAGCCCAGGTTCCCCATGACGCTCATATTGTCCCATT
GACTAACCAGAGGGCCCATTCACTCCCAACCCAATGAACACATCCCCCCTGACTCAAACGTCGAT
GAATGTTCATCATCACCCAGAGCCTGACCCCCTCCTACATCGCCCATCGCTCCTACACTTGCCTA
CATCCTCCTTCATTCTCCTCCATTCACCCATCACTTCATCCTCCTACTTTATTGTCTATTCAGTC
GTCCAGGGGCCCAAACTCGCCCTCGAAAATCGTCGCTCCGGCCTTGCGCCGGTTCTCGATCTCCA
CACACTCGTCCATCTCCAACACCGCCTGCGCAGTGGGCCGGTCAAACGGGTTGGGCCGCAACATC
TTCTGCACCAACCGGTCCAAGTTCATCAGGTCCCCCTCAACCAAGAATTGAGGTGCCAGCGCAGG
GATGTCGTCGATGGTCTCGCACGCCTGGCGCGCCGCCACCGCCGG
Found at i:6125 original size:18 final size:18
Alignment explanation
Indices: 6094--6153 Score: 66
Period size: 18 Copynumber: 3.2 Consensus size: 18
6084 TCGGGATTGT
* *
6094 CTCGTAAAGTCTCGGGAC
1 CTCGTAACGACTCGGGAC
*
6112 CTCGTAACGACTCGGAACC
1 CTCGTAACGACTCGGGA-C
6131 TTCTCGTAACGACTCGGGAC
1 --CTCGTAACGACTCGGGAC
6151 CTC
1 CTC
6154 TGAACGTCTC
Statistics
Matches: 35, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
18 17 0.49
19 1 0.03
20 1 0.03
21 16 0.46
ACGTcount: A:0.22, C:0.33, G:0.23, T:0.22
Consensus pattern (18 bp):
CTCGTAACGACTCGGGAC
Left flanking sequence: Indices 5594 -- 6093
CGCCTCGATCTCGCGCTCGATGGCCTTGCGCTCGTGTTTCCCGCGGAGCTGCCGCCGCAGCCGCT
TGATGGCGTACTTCTGGACGTCGCCGCCGCCGTCGGAGCCCAACGTGCACTCGTAGGCCACCAGG
AACTCGCCCAGCCCGATGTAGGCCAAGTTCTTCATCCCGAACTTCAGGATCAAGTGCTCGTCGGC
CTGGATGAGGCCCGGGGGCTTGGCGACGATGGTGGCCTCGGGGTCGTCGCCCGGGTCGTCGTCGA
GCTCGGGGATGCCGTCGATCTCGGCGCCCTTGGGCCGCAACGCCAGTTTCAGGTACATGAGGAGG
TTGGTGGGGGTCAGGGGCTCGTGGTGGGCCGCCACCGCGGGCGGGGCACAGGAGATGTAGAGGTT
TTTGGGGTTCTTTTTCTCGTCGAACGAGCTGGTGGCGGCGAAGAGCGCCAGGTCGAGGGGGGACA
GCGACTCGCGGGTGAACGAGCGGTCTCGGAACGACTCGGGATTGT
Right flanking sequence: Indices 6154 -- 6653
TGAACGTCTCGGAACCGTCTGGGAAAGTCTCGTTGCCTTCTCGGAACGACTCGGAACCTTCTCGG
AACGACTCACCTTCTCGGAACGACCCACGGCCGAGCTCGCGCAACGTCTCCCGCCCAAACGTGTC
GCTGGCCAGCCCGGGAAAGCCTCGGGTGTTCGAGTGGCCATTGCTATCTGGCGAAAACGCACACG
GCGTCAGATGGCTCTTCTTGACCGACTTCGTTGGGGTCTCGGGCACACTAATATTCATATCAAGA
TCCAAGTCCAAATCAATGTGCGGGTGGCGCTTGCCCGTCAGCACCTGCGCCAGCGGCCCCCCGAC
CCGGAAAAGCAGCACCGTGGAGTCGTTCACGAACGTCAGCGTGTTGCGCCCGAGCTCGATCGACA
CTTCCAGCATGTCGTCGTGCTGCGGGGTGGCCGCGTACTTGTCCGCGTACTTGTTGGTGTTGATC
ATCGTCAACGGGTTCTTCTTGATCGGGGTCTCCGGGAGCTTGTGG
Found at i:6136 original size:39 final size:39
Alignment explanation
Indices: 6093--6217 Score: 126
Period size: 39 Copynumber: 3.1 Consensus size: 39
6083 CTCGGGATTG
6093 TCTCGTAAAGTCTCGGGACCTCGTAACGACTCGGAACCT
1 TCTCGTAAAGTCTCGGGACCTCGTAACGACTCGGAACCT
* * * *
6132 TCTCGTAACGACTCGGGACCTC-TGAACGTCTCGGAACCG
1 TCTCGTAAAGTCTCGGGACCTCGT-AACGACTCGGAACCT
* * * * *
6171 TCTGGGAAAGTCTCGTTGCCTTCTCGGAACGACTCGGAACCT
1 TCTCGTAAAGTCTCG-GGAC--CTCGTAACGACTCGGAACCT
6213 TCTCG
1 TCTCG
6218 GAACGACTCA
Statistics
Matches: 67, Mismatches: 14, Indels: 7
0.76 0.16 0.08
Matches are distributed among these distances:
38 1 0.01
39 44 0.66
40 2 0.03
42 20 0.30
ACGTcount: A:0.20, C:0.31, G:0.25, T:0.24
Consensus pattern (39 bp):
TCTCGTAAAGTCTCGGGACCTCGTAACGACTCGGAACCT
Left flanking sequence: Indices 5593 -- 6092
GCGCCTCGATCTCGCGCTCGATGGCCTTGCGCTCGTGTTTCCCGCGGAGCTGCCGCCGCAGCCGC
TTGATGGCGTACTTCTGGACGTCGCCGCCGCCGTCGGAGCCCAACGTGCACTCGTAGGCCACCAG
GAACTCGCCCAGCCCGATGTAGGCCAAGTTCTTCATCCCGAACTTCAGGATCAAGTGCTCGTCGG
CCTGGATGAGGCCCGGGGGCTTGGCGACGATGGTGGCCTCGGGGTCGTCGCCCGGGTCGTCGTCG
AGCTCGGGGATGCCGTCGATCTCGGCGCCCTTGGGCCGCAACGCCAGTTTCAGGTACATGAGGAG
GTTGGTGGGGGTCAGGGGCTCGTGGTGGGCCGCCACCGCGGGCGGGGCACAGGAGATGTAGAGGT
TTTTGGGGTTCTTTTTCTCGTCGAACGAGCTGGTGGCGGCGAAGAGCGCCAGGTCGAGGGGGGAC
AGCGACTCGCGGGTGAACGAGCGGTCTCGGAACGACTCGGGATTG
Right flanking sequence: Indices 6218 -- 6717
GAACGACTCACCTTCTCGGAACGACCCACGGCCGAGCTCGCGCAACGTCTCCCGCCCAAACGTGT
CGCTGGCCAGCCCGGGAAAGCCTCGGGTGTTCGAGTGGCCATTGCTATCTGGCGAAAACGCACAC
GGCGTCAGATGGCTCTTCTTGACCGACTTCGTTGGGGTCTCGGGCACACTAATATTCATATCAAG
ATCCAAGTCCAAATCAATGTGCGGGTGGCGCTTGCCCGTCAGCACCTGCGCCAGCGGCCCCCCGA
CCCGGAAAAGCAGCACCGTGGAGTCGTTCACGAACGTCAGCGTGTTGCGCCCGAGCTCGATCGAC
ACTTCCAGCATGTCGTCGTGCTGCGGGGTGGCCGCGTACTTGTCCGCGTACTTGTTGGTGTTGAT
CATCGTCAACGGGTTCTTCTTGATCGGGGTCTCCGGGAGCTTGTGGGTGGGGTGGGGCGCTGCCA
GCAGCTTTTTCACGAGGCCCAGCAGCTTGAACGCGGTCTGGAGCG
Found at i:6138 original size:21 final size:21
Alignment explanation
Indices: 6112--6242 Score: 121
Period size: 21 Copynumber: 6.5 Consensus size: 21
6102 GTCTCGGGAC
*
6112 CTCGTAACGACTCGGAACCTT
1 CTCGGAACGACTCGGAACCTT
* *
6133 CTCGTAACGACTCGGGACC-T
1 CTCGGAACGACTCGGAACCTT
* *
6153 CT--GAACGTCTCGGAACCGT
1 CTCGGAACGACTCGGAACCTT
* * * ***
6172 CTGGGAAAGTCTCGTTGCCTT
1 CTCGGAACGACTCGGAACCTT
6193 CTCGGAACGACTCGGAACCTT
1 CTCGGAACGACTCGGAACCTT
6214 CTCGGAACGACTC---ACCTT
1 CTCGGAACGACTCGGAACCTT
6232 CTCGGAACGAC
1 CTCGGAACGAC
6243 CCACGGCCGA
Statistics
Matches: 92, Mismatches: 15, Indels: 9
0.79 0.13 0.08
Matches are distributed among these distances:
18 28 0.30
19 3 0.03
20 3 0.03
21 58 0.63
ACGTcount: A:0.21, C:0.33, G:0.24, T:0.22
Consensus pattern (21 bp):
CTCGGAACGACTCGGAACCTT
Left flanking sequence: Indices 5612 -- 6111
GATGGCCTTGCGCTCGTGTTTCCCGCGGAGCTGCCGCCGCAGCCGCTTGATGGCGTACTTCTGGA
CGTCGCCGCCGCCGTCGGAGCCCAACGTGCACTCGTAGGCCACCAGGAACTCGCCCAGCCCGATG
TAGGCCAAGTTCTTCATCCCGAACTTCAGGATCAAGTGCTCGTCGGCCTGGATGAGGCCCGGGGG
CTTGGCGACGATGGTGGCCTCGGGGTCGTCGCCCGGGTCGTCGTCGAGCTCGGGGATGCCGTCGA
TCTCGGCGCCCTTGGGCCGCAACGCCAGTTTCAGGTACATGAGGAGGTTGGTGGGGGTCAGGGGC
TCGTGGTGGGCCGCCACCGCGGGCGGGGCACAGGAGATGTAGAGGTTTTTGGGGTTCTTTTTCTC
GTCGAACGAGCTGGTGGCGGCGAAGAGCGCCAGGTCGAGGGGGGACAGCGACTCGCGGGTGAACG
AGCGGTCTCGGAACGACTCGGGATTGTCTCGTAAAGTCTCGGGAC
Right flanking sequence: Indices 6243 -- 6742
CCACGGCCGAGCTCGCGCAACGTCTCCCGCCCAAACGTGTCGCTGGCCAGCCCGGGAAAGCCTCG
GGTGTTCGAGTGGCCATTGCTATCTGGCGAAAACGCACACGGCGTCAGATGGCTCTTCTTGACCG
ACTTCGTTGGGGTCTCGGGCACACTAATATTCATATCAAGATCCAAGTCCAAATCAATGTGCGGG
TGGCGCTTGCCCGTCAGCACCTGCGCCAGCGGCCCCCCGACCCGGAAAAGCAGCACCGTGGAGTC
GTTCACGAACGTCAGCGTGTTGCGCCCGAGCTCGATCGACACTTCCAGCATGTCGTCGTGCTGCG
GGGTGGCCGCGTACTTGTCCGCGTACTTGTTGGTGTTGATCATCGTCAACGGGTTCTTCTTGATC
GGGGTCTCCGGGAGCTTGTGGGTGGGGTGGGGCGCTGCCAGCAGCTTTTTCACGAGGCCCAGCAG
CTTGAACGCGGTCTGGAGCGGCTTGACGAACCGGTACAGCGCGCG
Found at i:6164 original size:18 final size:19
Alignment explanation
Indices: 6104--6165 Score: 74
Period size: 18 Copynumber: 3.3 Consensus size: 19
6094 CTCGTAAAGT
6104 CTCGGGACCTC-GTAACGA
1 CTCGGGACCTCTGTAACGA
*
6122 CTCGGAACCTTCTCGTAACGA
1 CTCGGGACC-TCT-GTAACGA
*
6143 CTCGGGACCTCTG-AACGT
1 CTCGGGACCTCTGTAACGA
6161 CTCGG
1 CTCGG
6166 AACCGTCTGG
Statistics
Matches: 38, Mismatches: 3, Indels: 6
0.81 0.06 0.13
Matches are distributed among these distances:
18 17 0.45
19 3 0.08
20 3 0.08
21 15 0.39
ACGTcount: A:0.19, C:0.34, G:0.26, T:0.21
Consensus pattern (19 bp):
CTCGGGACCTCTGTAACGA
Left flanking sequence: Indices 5604 -- 6103
TCGCGCTCGATGGCCTTGCGCTCGTGTTTCCCGCGGAGCTGCCGCCGCAGCCGCTTGATGGCGTA
CTTCTGGACGTCGCCGCCGCCGTCGGAGCCCAACGTGCACTCGTAGGCCACCAGGAACTCGCCCA
GCCCGATGTAGGCCAAGTTCTTCATCCCGAACTTCAGGATCAAGTGCTCGTCGGCCTGGATGAGG
CCCGGGGGCTTGGCGACGATGGTGGCCTCGGGGTCGTCGCCCGGGTCGTCGTCGAGCTCGGGGAT
GCCGTCGATCTCGGCGCCCTTGGGCCGCAACGCCAGTTTCAGGTACATGAGGAGGTTGGTGGGGG
TCAGGGGCTCGTGGTGGGCCGCCACCGCGGGCGGGGCACAGGAGATGTAGAGGTTTTTGGGGTTC
TTTTTCTCGTCGAACGAGCTGGTGGCGGCGAAGAGCGCCAGGTCGAGGGGGGACAGCGACTCGCG
GGTGAACGAGCGGTCTCGGAACGACTCGGGATTGTCTCGTAAAGT
Right flanking sequence: Indices 6166 -- 6665
AACCGTCTGGGAAAGTCTCGTTGCCTTCTCGGAACGACTCGGAACCTTCTCGGAACGACTCACCT
TCTCGGAACGACCCACGGCCGAGCTCGCGCAACGTCTCCCGCCCAAACGTGTCGCTGGCCAGCCC
GGGAAAGCCTCGGGTGTTCGAGTGGCCATTGCTATCTGGCGAAAACGCACACGGCGTCAGATGGC
TCTTCTTGACCGACTTCGTTGGGGTCTCGGGCACACTAATATTCATATCAAGATCCAAGTCCAAA
TCAATGTGCGGGTGGCGCTTGCCCGTCAGCACCTGCGCCAGCGGCCCCCCGACCCGGAAAAGCAG
CACCGTGGAGTCGTTCACGAACGTCAGCGTGTTGCGCCCGAGCTCGATCGACACTTCCAGCATGT
CGTCGTGCTGCGGGGTGGCCGCGTACTTGTCCGCGTACTTGTTGGTGTTGATCATCGTCAACGGG
TTCTTCTTGATCGGGGTCTCCGGGAGCTTGTGGGTGGGGTGGGGC
Found at i:6241 original size:39 final size:40
Alignment explanation
Indices: 6112--6242 Score: 126
Period size: 39 Copynumber: 3.3 Consensus size: 40
6102 GTCTCGGGAC
* *
6112 CTCGTAACGACTCGGAACCTTCTCGTAACGACTCGGGACC-T
1 CTCGGAACGACTCGGAACCTTCTCGGAACGACTC--GACCTT
* * * * * *
6153 CT--GAACGTCTCGGAACCGTCTGGGAAAGTCTCGTTGCCTT
1 CTCGGAACGACTCGGAACCTTCTCGGAACGACTCG--ACCTT
6193 CTCGGAACGACTCGGAACCTTCTCGGAACGACTC-ACCTT
1 CTCGGAACGACTCGGAACCTTCTCGGAACGACTCGACCTT
6232 CTCGGAACGAC
1 CTCGGAACGAC
6243 CCACGGCCGA
Statistics
Matches: 71, Mismatches: 14, Indels: 12
0.73 0.14 0.12
Matches are distributed among these distances:
37 1 0.01
39 40 0.56
40 3 0.04
41 2 0.03
42 25 0.35
ACGTcount: A:0.21, C:0.33, G:0.24, T:0.22
Consensus pattern (40 bp):
CTCGGAACGACTCGGAACCTTCTCGGAACGACTCGACCTT
Left flanking sequence: Indices 5612 -- 6111
GATGGCCTTGCGCTCGTGTTTCCCGCGGAGCTGCCGCCGCAGCCGCTTGATGGCGTACTTCTGGA
CGTCGCCGCCGCCGTCGGAGCCCAACGTGCACTCGTAGGCCACCAGGAACTCGCCCAGCCCGATG
TAGGCCAAGTTCTTCATCCCGAACTTCAGGATCAAGTGCTCGTCGGCCTGGATGAGGCCCGGGGG
CTTGGCGACGATGGTGGCCTCGGGGTCGTCGCCCGGGTCGTCGTCGAGCTCGGGGATGCCGTCGA
TCTCGGCGCCCTTGGGCCGCAACGCCAGTTTCAGGTACATGAGGAGGTTGGTGGGGGTCAGGGGC
TCGTGGTGGGCCGCCACCGCGGGCGGGGCACAGGAGATGTAGAGGTTTTTGGGGTTCTTTTTCTC
GTCGAACGAGCTGGTGGCGGCGAAGAGCGCCAGGTCGAGGGGGGACAGCGACTCGCGGGTGAACG
AGCGGTCTCGGAACGACTCGGGATTGTCTCGTAAAGTCTCGGGAC
Right flanking sequence: Indices 6243 -- 6742
CCACGGCCGAGCTCGCGCAACGTCTCCCGCCCAAACGTGTCGCTGGCCAGCCCGGGAAAGCCTCG
GGTGTTCGAGTGGCCATTGCTATCTGGCGAAAACGCACACGGCGTCAGATGGCTCTTCTTGACCG
ACTTCGTTGGGGTCTCGGGCACACTAATATTCATATCAAGATCCAAGTCCAAATCAATGTGCGGG
TGGCGCTTGCCCGTCAGCACCTGCGCCAGCGGCCCCCCGACCCGGAAAAGCAGCACCGTGGAGTC
GTTCACGAACGTCAGCGTGTTGCGCCCGAGCTCGATCGACACTTCCAGCATGTCGTCGTGCTGCG
GGGTGGCCGCGTACTTGTCCGCGTACTTGTTGGTGTTGATCATCGTCAACGGGTTCTTCTTGATC
GGGGTCTCCGGGAGCTTGTGGGTGGGGTGGGGCGCTGCCAGCAGCTTTTTCACGAGGCCCAGCAG
CTTGAACGCGGTCTGGAGCGGCTTGACGAACCGGTACAGCGCGCG
Found at i:7773 original size:20 final size:19
Alignment explanation
Indices: 7748--7801 Score: 83
Period size: 20 Copynumber: 2.8 Consensus size: 19
7738 GGGGTAGGGT
7748 AGTGGTAGTGTAGTGTGGGG
1 AGTGGTAGTGT-GTGTGGGG
7768 AGTGGTAGTGGTGTGTGGGG
1 AGTGGTAGT-GTGTGTGGGG
7788 AGTGGTAGTG-GTGT
1 AGTGGTAGTGTGTGT
7802 TTGTGGGGTG
Statistics
Matches: 33, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
18 4 0.12
19 1 0.03
20 26 0.79
21 2 0.06
ACGTcount: A:0.13, C:0.00, G:0.56, T:0.31
Consensus pattern (19 bp):
AGTGGTAGTGTGTGTGGGG
Left flanking sequence: Indices 7248 -- 7747
TTGTGGGGGCGTTTGAACTTGTTGTGGACCCTCGGGGTGCGCTGGGCCACGGGCAGCGACGTGTC
GATGGGCGTGGGGTCGCGCTGAAACCCGTCGATCTCGCCCAAGTCGCCCAAGTCGTCGTGGGGGT
ACAGCTGGAGCAGCAGGTCGATCAGGAGGTTGAGGAACTTCAGCAGGCGCTTGATCAGGCCTGGG
GCTGCGGGACGGGCCCTGGGGGTGGCGTCGAGCGGTGGGTCTGGGTGGCTGGTGGGCCCAGGCGC
GTGGTCGTGCTCTTCCGACAGCTGGGAGCGCAGCAGGCGGTTGTAGCGGAGCCGGGGCCGAACCG
AGAACGGAGGCGACTTGTTGATCTTCTTCGGGGCCTTGGCGAGTTCGTCTGCGATGTCGTCGAGG
ATCAACAGGTTGAACAGGCGCGAGAACTGCCCGTTGGTGAAGTACTCGAGCTCGTCGGAGCGCGG
CAGTGACGTCATGGTGGGAGAGGCGGGGCAGTGGTGGGGTAGGGT
Right flanking sequence: Indices 7802 -- 8301
TTGTGGGGTGTGTTGGTGTTTCAGGTGGTGTTTCGTGGCGTTTCTAGGTGGCTCTGGGTCTCCTG
GTGTTCCTGGAAGAAACGGTGGAGAGGACGTAGAAACGGTGGAAACGGGCTGTCTTTTGGTGAAA
CAGACAGTCTTTTTGGACGGTTTCCTTGAAAAACTCCTCTTGCGTGGTACTCACACAGGTGTGTC
AAACAGTGGCACTGGTTGGTTTGCCTCGAAAGAGCCCTCGGTGTATGGGTATCGGACCGTAAGTA
ACAGTAACACTCCTACGGGCTAGCAGCAAACGCAGCAGCACGTGGCTGGGTCTCAGGTTCTCTCG
TGTCGTGCGGGTGGGTCTCGGAAATGTATCCAGACCTCGTCAGCGATCAGCAGCAAAAAGGCCAA
TCGGCGAGTAAACACAGCAGGTGCGGTCTCAGGTGCGGTTCAGGCGCGGTCTCAGACACAGCAGG
GATACAGCCAAACACTCCGTGTGGGGCCAGCGGTCCAGGGGCGTG
Found at i:8240 original size:11 final size:12
Alignment explanation
Indices: 8209--8246 Score: 60
Period size: 12 Copynumber: 3.2 Consensus size: 12
8199 GTAAACACAG
8209 CAGGTGCGGTCT
1 CAGGTGCGGTCT
8221 CAGGTGCGGT-T
1 CAGGTGCGGTCT
*
8232 CAGGCGCGGTCT
1 CAGGTGCGGTCT
8244 CAG
1 CAG
8247 ACACAGCAGG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
11 10 0.42
12 14 0.58
ACGTcount: A:0.11, C:0.26, G:0.42, T:0.21
Consensus pattern (12 bp):
CAGGTGCGGTCT
Left flanking sequence: Indices 7709 -- 8208
CGTCATGGTGGGAGAGGCGGGGCAGTGGTGGGGTAGGGTAGTGGTAGTGTAGTGTGGGGAGTGGT
AGTGGTGTGTGGGGAGTGGTAGTGGTGTTTGTGGGGTGTGTTGGTGTTTCAGGTGGTGTTTCGTG
GCGTTTCTAGGTGGCTCTGGGTCTCCTGGTGTTCCTGGAAGAAACGGTGGAGAGGACGTAGAAAC
GGTGGAAACGGGCTGTCTTTTGGTGAAACAGACAGTCTTTTTGGACGGTTTCCTTGAAAAACTCC
TCTTGCGTGGTACTCACACAGGTGTGTCAAACAGTGGCACTGGTTGGTTTGCCTCGAAAGAGCCC
TCGGTGTATGGGTATCGGACCGTAAGTAACAGTAACACTCCTACGGGCTAGCAGCAAACGCAGCA
GCACGTGGCTGGGTCTCAGGTTCTCTCGTGTCGTGCGGGTGGGTCTCGGAAATGTATCCAGACCT
CGTCAGCGATCAGCAGCAAAAAGGCCAATCGGCGAGTAAACACAG
Right flanking sequence: Indices 8247 -- 8746
ACACAGCAGGGATACAGCCAAACACTCCGTGTGGGGCCAGCGGTCCAGGGGCGTGGGTTGGGGCC
TCGTGGGTCGCTAGTCTTGCTCTCGCGTGAACGGGCGCTCCGGGCGGGTTCCGTTGCAGGGGCGG
TGCGGGGGGCAAGCAGGGGGCGTGGGTAGCAGGCACGCCTAGTTGTAAGCTCTGGGGACGCACGC
TCGTGGAACGGCGTCGGGTTCAAATGGGGGGGGTGGGTGGTGTTGATTGTTTTGATTTGCACCGC
GAAAAAGTCGATGCGCGTTCGGGGGGTCCCAAGCCACCAGGGCGCGCAAACGGGCTTTTGCCGCG
GAGAACGGCGGTGGAAAACAGGCCCACCGTGTTTGGCGGGCCCGGTTTGCCTACGGTGGGCGCTT
TTTCGCGCCCGGTTGTCTCCGCGGTTCGCGAGCTAGCGGCCCTGTTGTCACCTGTCACGGGCGCG
TCGGTGCGACTGGTCGCAACCCTTGGGTTTGTGTCACCGGCTATC
Found at i:9348 original size:12 final size:12
Alignment explanation
Indices: 9333--9397 Score: 75
Period size: 12 Copynumber: 5.8 Consensus size: 12
9323 GGGCGAAGAG
*
9333 GCGAGCGAGGGA
1 GCGAGCGAAGGA
9345 GCGAGCGAAGGA
1 GCGAGCGAAGGA
9357 GCGAGCGAA-GA
1 GCGAGCGAAGGA
*
9368 -AGAGCGAAGGA
1 GCGAGCGAAGGA
*
9379 --GAGCGAAGAA
1 GCGAGCGAAGGA
9389 GCGAGCGAA
1 GCGAGCGAA
9398 AAAGGCAAGC
Statistics
Matches: 47, Mismatches: 3, Indels: 6
0.84 0.05 0.11
Matches are distributed among these distances:
10 16 0.34
11 4 0.09
12 27 0.57
ACGTcount: A:0.37, C:0.15, G:0.48, T:0.00
Consensus pattern (12 bp):
GCGAGCGAAGGA
Left flanking sequence: Indices 8833 -- 9332
TGGTGGTGTTGGGCCCCTGTCTTGAGCCCGAGGCTTGTTTACCAGGACCCCGATAATAATGGAAG
CGTCGAACCTTAATATGCACGAACCTGTGGGAGCCCGCCCGGAATGTTGGGAAGAGTGGAAGAAT
AGGGGACGGAGATGGGGAGAGGGGACGGAGATGGTGGGAGATGGGGTGGGGAAGTAGGGTGGAGA
AGTGGGCAGAGAGGTGGTGGGTGGGTGGTAGGTCGGTTGTGTGGACTTAAAGACTGGTGGTAGTG
TGCGTGGTTGTGTAGTGCTGTAGCCTGTCCGGCTACTCGTCACCACGTCACTATAGCCGGATGTC
AGATCCACTAAATAACGCGGGTTTAGCCGCACGTGCAGGCAGCGGTGGCCAGTGGGCCCACAGCA
ATAGTAGCAGGCGGGAATGCGTAGCGGTGGTGGCCACGGCTAGTAGCGCTAGCAGTGGCTAGTCA
TGTGACAATGTCGTGACACGACGCAACCGAGCGAAGGGCGAAGAG
Right flanking sequence: Indices 9398 -- 9897
AAAGGCAAGCGAAGCGGGTTACGAGGCGATGGCCAGTTTGCGAAAGGAATGTGTGGAGGGGAATG
TGTGGGATGAGTGGGGATGATTAGTGGTGGGATTGAGTGGGGATGTGTTTAGTGGTTATGGGTAG
AGTGGGTTGAGTGGTGGAGTGGTAGAGTGGGTTTGAGTGGTAGGGTGGGTAGAGTGGTAGAGTGG
GTTTGAGTGGTTGTAGTGGAGGTGTAGGTTTTGTTGTGTAGTGGTTGTGTAGTTGTGTACTGGTT
ATCACACTGTCATTGTTGACTTCGTGAATCACCGACTCCCTATTTGCTCATGACGTTGGTCGACA
CGACGAGATCGTTTTCATGTGCTCCCACGCTCCCCGCTGGTATGCCCCGCTTGGGCCCCGCGTGG
TTATGGCGTGTGTTTCCCACGCCTGATCCGTTTAGCCCTTCTAGAACCCTTGCTGCCTTTCAGGG
TCCAGTCAAACGGTAGAGAACAAAAAAGAAAAGCGGCCACGCTAC
Found at i:9374 original size:10 final size:10
Alignment explanation
Indices: 9359--9389 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
9349 GCGAAGGAGC
9359 GAGCGAAGAA
1 GAGCGAAGAA
*
9369 GAGCGAAGGA
1 GAGCGAAGAA
9379 GAGCGAAGAA
1 GAGCGAAGAA
9389 G
1 G
9390 CGAGCGAAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.45, C:0.10, G:0.45, T:0.00
Consensus pattern (10 bp):
GAGCGAAGAA
Left flanking sequence: Indices 8859 -- 9358
CCCGAGGCTTGTTTACCAGGACCCCGATAATAATGGAAGCGTCGAACCTTAATATGCACGAACCT
GTGGGAGCCCGCCCGGAATGTTGGGAAGAGTGGAAGAATAGGGGACGGAGATGGGGAGAGGGGAC
GGAGATGGTGGGAGATGGGGTGGGGAAGTAGGGTGGAGAAGTGGGCAGAGAGGTGGTGGGTGGGT
GGTAGGTCGGTTGTGTGGACTTAAAGACTGGTGGTAGTGTGCGTGGTTGTGTAGTGCTGTAGCCT
GTCCGGCTACTCGTCACCACGTCACTATAGCCGGATGTCAGATCCACTAAATAACGCGGGTTTAG
CCGCACGTGCAGGCAGCGGTGGCCAGTGGGCCCACAGCAATAGTAGCAGGCGGGAATGCGTAGCG
GTGGTGGCCACGGCTAGTAGCGCTAGCAGTGGCTAGTCATGTGACAATGTCGTGACACGACGCAA
CCGAGCGAAGGGCGAAGAGGCGAGCGAGGGAGCGAGCGAAGGAGC
Right flanking sequence: Indices 9390 -- 9889
CGAGCGAAAAAGGCAAGCGAAGCGGGTTACGAGGCGATGGCCAGTTTGCGAAAGGAATGTGTGGA
GGGGAATGTGTGGGATGAGTGGGGATGATTAGTGGTGGGATTGAGTGGGGATGTGTTTAGTGGTT
ATGGGTAGAGTGGGTTGAGTGGTGGAGTGGTAGAGTGGGTTTGAGTGGTAGGGTGGGTAGAGTGG
TAGAGTGGGTTTGAGTGGTTGTAGTGGAGGTGTAGGTTTTGTTGTGTAGTGGTTGTGTAGTTGTG
TACTGGTTATCACACTGTCATTGTTGACTTCGTGAATCACCGACTCCCTATTTGCTCATGACGTT
GGTCGACACGACGAGATCGTTTTCATGTGCTCCCACGCTCCCCGCTGGTATGCCCCGCTTGGGCC
CCGCGTGGTTATGGCGTGTGTTTCCCACGCCTGATCCGTTTAGCCCTTCTAGAACCCTTGCTGCC
TTTCAGGGTCCAGTCAAACGGTAGAGAACAAAAAAGAAAAGCGGC
Found at i:9384 original size:20 final size:21
Alignment explanation
Indices: 9347--9389 Score: 70
Period size: 20 Copynumber: 2.0 Consensus size: 21
9337 GCGAGGGAGC
9347 GAGCGAAGGAGCGAGCGAAGAA
1 GAGCGAAGGA-CGAGCGAAGAA
9369 GAGCGAAGGA-GAGCGAAGAA
1 GAGCGAAGGACGAGCGAAGAA
9389 G
1 G
9390 CGAGCGAAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
20 11 0.52
22 10 0.48
ACGTcount: A:0.42, C:0.12, G:0.47, T:0.00
Consensus pattern (21 bp):
GAGCGAAGGACGAGCGAAGAA
Left flanking sequence: Indices 8847 -- 9346
CCCTGTCTTGAGCCCGAGGCTTGTTTACCAGGACCCCGATAATAATGGAAGCGTCGAACCTTAAT
ATGCACGAACCTGTGGGAGCCCGCCCGGAATGTTGGGAAGAGTGGAAGAATAGGGGACGGAGATG
GGGAGAGGGGACGGAGATGGTGGGAGATGGGGTGGGGAAGTAGGGTGGAGAAGTGGGCAGAGAGG
TGGTGGGTGGGTGGTAGGTCGGTTGTGTGGACTTAAAGACTGGTGGTAGTGTGCGTGGTTGTGTA
GTGCTGTAGCCTGTCCGGCTACTCGTCACCACGTCACTATAGCCGGATGTCAGATCCACTAAATA
ACGCGGGTTTAGCCGCACGTGCAGGCAGCGGTGGCCAGTGGGCCCACAGCAATAGTAGCAGGCGG
GAATGCGTAGCGGTGGTGGCCACGGCTAGTAGCGCTAGCAGTGGCTAGTCATGTGACAATGTCGT
GACACGACGCAACCGAGCGAAGGGCGAAGAGGCGAGCGAGGGAGC
Right flanking sequence: Indices 9390 -- 9889
CGAGCGAAAAAGGCAAGCGAAGCGGGTTACGAGGCGATGGCCAGTTTGCGAAAGGAATGTGTGGA
GGGGAATGTGTGGGATGAGTGGGGATGATTAGTGGTGGGATTGAGTGGGGATGTGTTTAGTGGTT
ATGGGTAGAGTGGGTTGAGTGGTGGAGTGGTAGAGTGGGTTTGAGTGGTAGGGTGGGTAGAGTGG
TAGAGTGGGTTTGAGTGGTTGTAGTGGAGGTGTAGGTTTTGTTGTGTAGTGGTTGTGTAGTTGTG
TACTGGTTATCACACTGTCATTGTTGACTTCGTGAATCACCGACTCCCTATTTGCTCATGACGTT
GGTCGACACGACGAGATCGTTTTCATGTGCTCCCACGCTCCCCGCTGGTATGCCCCGCTTGGGCC
CCGCGTGGTTATGGCGTGTGTTTCCCACGCCTGATCCGTTTAGCCCTTCTAGAACCCTTGCTGCC
TTTCAGGGTCCAGTCAAACGGTAGAGAACAAAAAAGAAAAGCGGC
Found at i:9539 original size:9 final size:9
Alignment explanation
Indices: 9521--9594 Score: 75
Period size: 8 Copynumber: 8.6 Consensus size: 9
9511 TTAGTGGTTA
9521 TGGGTAGAG
1 TGGGTAGAG
*
9530 TGGGTTGAG
1 TGGGTAGAG
*
9539 T-GGTGGAG
1 TGGGTAGAG
9547 T-GGTAGAG
1 TGGGTAGAG
*
9555 TGGGTTTGAG
1 TGGG-TAGAG
*
9565 T-GGTAGGG
1 TGGGTAGAG
9573 TGGGTAGAG
1 TGGGTAGAG
9582 T-GGTAGAG
1 TGGGTAGAG
9590 TGGGT
1 TGGGT
9595 TTGAGTGGTT
Statistics
Matches: 54, Mismatches: 7, Indels: 8
0.78 0.10 0.12
Matches are distributed among these distances:
8 26 0.48
9 23 0.43
10 5 0.09
ACGTcount: A:0.16, C:0.00, G:0.55, T:0.28
Consensus pattern (9 bp):
TGGGTAGAG
Left flanking sequence: Indices 9021 -- 9520
GTGGAGAAGTGGGCAGAGAGGTGGTGGGTGGGTGGTAGGTCGGTTGTGTGGACTTAAAGACTGGT
GGTAGTGTGCGTGGTTGTGTAGTGCTGTAGCCTGTCCGGCTACTCGTCACCACGTCACTATAGCC
GGATGTCAGATCCACTAAATAACGCGGGTTTAGCCGCACGTGCAGGCAGCGGTGGCCAGTGGGCC
CACAGCAATAGTAGCAGGCGGGAATGCGTAGCGGTGGTGGCCACGGCTAGTAGCGCTAGCAGTGG
CTAGTCATGTGACAATGTCGTGACACGACGCAACCGAGCGAAGGGCGAAGAGGCGAGCGAGGGAG
CGAGCGAAGGAGCGAGCGAAGAAGAGCGAAGGAGAGCGAAGAAGCGAGCGAAAAAGGCAAGCGAA
GCGGGTTACGAGGCGATGGCCAGTTTGCGAAAGGAATGTGTGGAGGGGAATGTGTGGGATGAGTG
GGGATGATTAGTGGTGGGATTGAGTGGGGATGTGTTTAGTGGTTA
Right flanking sequence: Indices 9595 -- 10094
TTGAGTGGTTGTAGTGGAGGTGTAGGTTTTGTTGTGTAGTGGTTGTGTAGTTGTGTACTGGTTAT
CACACTGTCATTGTTGACTTCGTGAATCACCGACTCCCTATTTGCTCATGACGTTGGTCGACACG
ACGAGATCGTTTTCATGTGCTCCCACGCTCCCCGCTGGTATGCCCCGCTTGGGCCCCGCGTGGTT
ATGGCGTGTGTTTCCCACGCCTGATCCGTTTAGCCCTTCTAGAACCCTTGCTGCCTTTCAGGGTC
CAGTCAAACGGTAGAGAACAAAAAAGAAAAGCGGCCACGCTACCGAGGTGCAACCGACGAGTGTC
ACGGCTAGCCGAGAAGTCATTGCCCCGGAACGACGCGTGGGGTGATCGTTCTATTTTGAGTTGCG
CCCGGGGAGAATGGGACGATAAGGTTCACTAGACGATCGGGTCTGGAGAGCGCAGGAACCCGCCT
GGAGGTTGCGGACAGGCGAAGGGGGGTGGGACTGAGCGGAGAGGC
Found at i:9567 original size:18 final size:18
Alignment explanation
Indices: 9544--9603 Score: 95
Period size: 18 Copynumber: 3.4 Consensus size: 18
9534 TTGAGTGGTG
9544 GAGTGGTAGAGTGGGTTT
1 GAGTGGTAGAGTGGGTTT
* *
9562 GAGTGGTAGGGTGGG-TA
1 GAGTGGTAGAGTGGGTTT
9579 GAGTGGTAGAGTGGGTTT
1 GAGTGGTAGAGTGGGTTT
9597 GAGTGGT
1 GAGTGGT
9604 TGTAGTGGAG
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
17 15 0.41
18 22 0.59
ACGTcount: A:0.17, C:0.00, G:0.53, T:0.30
Consensus pattern (18 bp):
GAGTGGTAGAGTGGGTTT
Left flanking sequence: Indices 9044 -- 9543
GTGGGTGGGTGGTAGGTCGGTTGTGTGGACTTAAAGACTGGTGGTAGTGTGCGTGGTTGTGTAGT
GCTGTAGCCTGTCCGGCTACTCGTCACCACGTCACTATAGCCGGATGTCAGATCCACTAAATAAC
GCGGGTTTAGCCGCACGTGCAGGCAGCGGTGGCCAGTGGGCCCACAGCAATAGTAGCAGGCGGGA
ATGCGTAGCGGTGGTGGCCACGGCTAGTAGCGCTAGCAGTGGCTAGTCATGTGACAATGTCGTGA
CACGACGCAACCGAGCGAAGGGCGAAGAGGCGAGCGAGGGAGCGAGCGAAGGAGCGAGCGAAGAA
GAGCGAAGGAGAGCGAAGAAGCGAGCGAAAAAGGCAAGCGAAGCGGGTTACGAGGCGATGGCCAG
TTTGCGAAAGGAATGTGTGGAGGGGAATGTGTGGGATGAGTGGGGATGATTAGTGGTGGGATTGA
GTGGGGATGTGTTTAGTGGTTATGGGTAGAGTGGGTTGAGTGGTG
Right flanking sequence: Indices 9604 -- 10103
TGTAGTGGAGGTGTAGGTTTTGTTGTGTAGTGGTTGTGTAGTTGTGTACTGGTTATCACACTGTC
ATTGTTGACTTCGTGAATCACCGACTCCCTATTTGCTCATGACGTTGGTCGACACGACGAGATCG
TTTTCATGTGCTCCCACGCTCCCCGCTGGTATGCCCCGCTTGGGCCCCGCGTGGTTATGGCGTGT
GTTTCCCACGCCTGATCCGTTTAGCCCTTCTAGAACCCTTGCTGCCTTTCAGGGTCCAGTCAAAC
GGTAGAGAACAAAAAAGAAAAGCGGCCACGCTACCGAGGTGCAACCGACGAGTGTCACGGCTAGC
CGAGAAGTCATTGCCCCGGAACGACGCGTGGGGTGATCGTTCTATTTTGAGTTGCGCCCGGGGAG
AATGGGACGATAAGGTTCACTAGACGATCGGGTCTGGAGAGCGCAGGAACCCGCCTGGAGGTTGC
GGACAGGCGAAGGGGGGTGGGACTGAGCGGAGAGGCGAGAGGGGT
Found at i:10110 original size:27 final size:28
Alignment explanation
Indices: 10057--10116 Score: 95
Period size: 27 Copynumber: 2.2 Consensus size: 28
10047 CCTGGAGGTT
*
10057 GCGGACAGGCGAAGGGGGGTGGGACTGA
1 GCGGACAGGCGAAGAGGGGTGGGACTGA
*
10085 GCGGAGAGGCG-AGAGGGGTGGGACTGA
1 GCGGACAGGCGAAGAGGGGTGGGACTGA
10112 GCGGA
1 GCGGA
10117 AGAAGGGGGG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
27 20 0.67
28 10 0.33
ACGTcount: A:0.22, C:0.13, G:0.58, T:0.07
Consensus pattern (28 bp):
GCGGACAGGCGAAGAGGGGTGGGACTGA
Left flanking sequence: Indices 9557 -- 10056
GGTTTGAGTGGTAGGGTGGGTAGAGTGGTAGAGTGGGTTTGAGTGGTTGTAGTGGAGGTGTAGGT
TTTGTTGTGTAGTGGTTGTGTAGTTGTGTACTGGTTATCACACTGTCATTGTTGACTTCGTGAAT
CACCGACTCCCTATTTGCTCATGACGTTGGTCGACACGACGAGATCGTTTTCATGTGCTCCCACG
CTCCCCGCTGGTATGCCCCGCTTGGGCCCCGCGTGGTTATGGCGTGTGTTTCCCACGCCTGATCC
GTTTAGCCCTTCTAGAACCCTTGCTGCCTTTCAGGGTCCAGTCAAACGGTAGAGAACAAAAAAGA
AAAGCGGCCACGCTACCGAGGTGCAACCGACGAGTGTCACGGCTAGCCGAGAAGTCATTGCCCCG
GAACGACGCGTGGGGTGATCGTTCTATTTTGAGTTGCGCCCGGGGAGAATGGGACGATAAGGTTC
ACTAGACGATCGGGTCTGGAGAGCGCAGGAACCCGCCTGGAGGTT
Right flanking sequence: Indices 10117 -- 10616
AGAAGGGGGGTGGTGTGGGGTGAGCTGAGCAGTGTAGAAACACCGAGCCGGCTGATTGTGTGTGT
CGGGCCAAAAGTGTAAAGAGTAGTGTGATCCAGGTCGATGGTTACCAGGTCATTAGTGGAGTAGG
CTCTCCAGGTATTGGCGTATCAGCCATGGTTAGAAGTGCTTATCGTTTGTCTCAAAATAACTCAT
AGTCCAACTATTGGTAGCTCGTTAAAGTGCCTAACTCACGGTAATGTCAGTCGCTGTTGTGTCTG
TAACGACTACAATCTGAGTGTTGTAACTTCGGAATAAACCAATAGTTGGATCAATAAGTTGAAGG
AAGATAAATAATAAGGCGGAACTACTTTGAAGGCAGGTACGTGGTTAAGTCGGGAGTGGATTGCC
CCTCAACGCTGACTGCTTCTGATTTGATAGACAGCAGGTGATAACCATCGTTAGTTACCAACGGT
ACACGCAGCCAAGGGTATTCATGTTACTCCACCAAAGCTACACCA
Found at i:10131 original size:27 final size:25
Alignment explanation
Indices: 10070--10129 Score: 77
Period size: 27 Copynumber: 2.4 Consensus size: 25
10060 GACAGGCGAA
10070 GGGGGGTGGGACTGAGCGGAGAGGC
1 GGGGGGTGGGACTGAGCGGAGAGGC
**
10095 GAGAGGGGTGGGACTGAGCGGA-AGAA
1 G-G-GGGGTGGGACTGAGCGGAGAGGC
10121 GGGGGGTGG
1 GGGGGGTGG
10130 TGTGGGGTGA
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
24 7 0.23
25 2 0.06
26 4 0.13
27 18 0.58
ACGTcount: A:0.20, C:0.08, G:0.63, T:0.08
Consensus pattern (25 bp):
GGGGGGTGGGACTGAGCGGAGAGGC
Left flanking sequence: Indices 9570 -- 10069
GGGTGGGTAGAGTGGTAGAGTGGGTTTGAGTGGTTGTAGTGGAGGTGTAGGTTTTGTTGTGTAGT
GGTTGTGTAGTTGTGTACTGGTTATCACACTGTCATTGTTGACTTCGTGAATCACCGACTCCCTA
TTTGCTCATGACGTTGGTCGACACGACGAGATCGTTTTCATGTGCTCCCACGCTCCCCGCTGGTA
TGCCCCGCTTGGGCCCCGCGTGGTTATGGCGTGTGTTTCCCACGCCTGATCCGTTTAGCCCTTCT
AGAACCCTTGCTGCCTTTCAGGGTCCAGTCAAACGGTAGAGAACAAAAAAGAAAAGCGGCCACGC
TACCGAGGTGCAACCGACGAGTGTCACGGCTAGCCGAGAAGTCATTGCCCCGGAACGACGCGTGG
GGTGATCGTTCTATTTTGAGTTGCGCCCGGGGAGAATGGGACGATAAGGTTCACTAGACGATCGG
GTCTGGAGAGCGCAGGAACCCGCCTGGAGGTTGCGGACAGGCGAA
Right flanking sequence: Indices 10130 -- 10629
TGTGGGGTGAGCTGAGCAGTGTAGAAACACCGAGCCGGCTGATTGTGTGTGTCGGGCCAAAAGTG
TAAAGAGTAGTGTGATCCAGGTCGATGGTTACCAGGTCATTAGTGGAGTAGGCTCTCCAGGTATT
GGCGTATCAGCCATGGTTAGAAGTGCTTATCGTTTGTCTCAAAATAACTCATAGTCCAACTATTG
GTAGCTCGTTAAAGTGCCTAACTCACGGTAATGTCAGTCGCTGTTGTGTCTGTAACGACTACAAT
CTGAGTGTTGTAACTTCGGAATAAACCAATAGTTGGATCAATAAGTTGAAGGAAGATAAATAATA
AGGCGGAACTACTTTGAAGGCAGGTACGTGGTTAAGTCGGGAGTGGATTGCCCCTCAACGCTGAC
TGCTTCTGATTTGATAGACAGCAGGTGATAACCATCGTTAGTTACCAACGGTACACGCAGCCAAG
GGTATTCATGTTACTCCACCAAAGCTACACCAACGACGTTCTAAG
Found at i:13351 original size:13 final size:13
Alignment explanation
Indices: 13333--13358 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
13323 TGATTCTAGG
13333 CATTGTGTGCAAC
1 CATTGTGTGCAAC
13346 CATTGTGTGCAAC
1 CATTGTGTGCAAC
13359 GAATATATAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.23, G:0.23, T:0.31
Consensus pattern (13 bp):
CATTGTGTGCAAC
Left flanking sequence: Indices 12833 -- 13332
AGAGAGCTTCACATTGATCAGAACTCGGCTCCTGGACGACCTCTAGCCTCGGCATAATTGCTAGT
AGTCAATTGATGGAAAACAGCGAGGATGGCCAATTGGGGACTGAATTGGTTGTACTACGTACTCA
TGAGGCAGTCCGATGGCACGCAACACACCCAATCCACCCATTCGTAAAATCCTTGGACTGTTCCA
CCCTCACGTCACCCTCACGTGCTTCTCACGTGCCGCACACTATAAAACCGCGATGGCTCGAAACG
AAAAACCACCGCCAGAAGATCAGTCTCTTCGAACACCTTCCTTGCCTTTTACCAGGGAGGTCCGG
GGGCTGTCTTTGCTAATGGTGTGTCAGTATTTTTTGGAACTCCCAGCACAATTTTAATTGGCACT
TTTGCCCCGGCTCCGTGTGGACATGGCGTCGTGGCAAAAGTGAGAATTGGAGGAGGGTGGTGGGG
AAGGGAAGAGTAGGGTAGAGCTATGGCGTTGGTGGTGATTCTAGG
Right flanking sequence: Indices 13359 -- 13858
GAATATATACAATATACCCACTACTAGTCGGAGTGCTTGGTCCTACAGTCTCAGCGATGTGAAGG
TGTATTTTTGCGATGAGACGTGTATGGTCGTAAAGTCCTTACTGATGAGCGATTGAATGGCTGTC
TATGGGCCATTTTGTGTTCTCTGGTGCCCACTGAAAGTCTGTGTAGGCTGTTATTGAGCGATGTT
AGGTGTATTTGACTCTTTGACTGAGTGGTGCTCTGGGCTATGGAATCGAGAAGTGGGTTTGAATC
CCGTCAACGAGACACTCTGACTAGTCAACAGTCACACAATCCTATCGCAAAGCTACCCCGTATAC
TGCTTCATCAGGTAAGCCATTTCAACTGTGTAATTCTGTGTAACCTTGTGTAACCCTGTGTACAC
TGTTCCCGTTCAACTTCTCACTGATTATAACATGAAGGTAGGATATAACAATGGACGCTAAAGCG
TTAGCAATAACTACACTAAAAGTTGAAACATAAATCCCTTAACCC
Found at i:14921 original size:11 final size:11
Alignment explanation
Indices: 14907--14932 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
14897 TGGAAGGTGG
14907 GAAGGTGGGAA
1 GAAGGTGGGAA
14918 GAAGGTGGGAA
1 GAAGGTGGGAA
14929 GAAG
1 GAAG
14933 AGAGATTTGG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.38, C:0.00, G:0.54, T:0.08
Consensus pattern (11 bp):
GAAGGTGGGAA
Left flanking sequence: Indices 14407 -- 14906
GCTCGGTGCCGGGAGCCACGAGCCCAGACTCGTCCCGCACGCGGAACTCGCCGAGGTGGCGCTTG
GGCAGCACCCCTGCCCGCTCGAACTTGGCCAAGTCCGCCTCACGGACGTTCTTGAGCTTGTCGAT
CTGGCCAAGCAACACCAGCCAGTACCCGTGGGAGTCCACGGTTTTGTTGGCCACAACCTCACAGT
TGTCGATCTCGATCACCGTGGCGGGATACATCTTCCCCTCCTTGGTGAACCACGACACCATCCCT
CTCTTGACCCCGAGAAGACCGGGACGTCCAAGCAACAGCTTGCGCAAATTCAGCATCTCGAGCGA
GTGGTTGACGGGCGCGGCTGCCGTGCGGATCGAGGGAACCGCATGGATCAGGGTGAGCTGCGCCG
CCCCACGAGTGAACTGCTTTAGCGTCATGGTAGGGTTGGACTTTTTTGATGAAAAATTGCGCTAC
CAGTATGGTGAAAAGTGCGAGAAAAAAAAGATGGGTGGAAGGTGG
Right flanking sequence: Indices 14933 -- 15432
AGAGATTTGGGAGACGGGGATAAGAGAAGATGAGTAGGGGTGTTTGGTGGTGTTTTATGTTATGA
AAAAGTGTTTACTCGAAACTTTTGTTTTGGTGGTGTGTTTCGTGTTTCGATTTGTGCCAATGTAA
ACCGTTTTACCGGATTTTATTGGACTCTCTACTAGTATTCTGGTGCGACTCACAGGAAATTTTCG
TCGGTGAATGGTGTTCGCGCTATGTAGAAAAAGCTCAGTGGAAAGCATGACCAAACATCAGGTGA
TCGGGCCAAATCCCAAAGTGGCCTGGTGCTCTCTTGGCCAGCTCTCTTGACTTGCTCTCTGACCT
GCTCTCTGACCTGCTCTCTTGACCTATTCTCTAGACCAACTCTCCGAATCTGTCTACGTCACCCT
CATTTTTAAACCCTACGTGGTCCACTAGTCTCATTCTCTTTCCCTACAGTGGACTGTTCTATTCG
ACCCGCTCCATGATCGCCATGTCGCCGTTGCAGCATTAGGCACCC
Found at i:15260 original size:12 final size:13
Alignment explanation
Indices: 15219--15282 Score: 87
Period size: 12 Copynumber: 5.1 Consensus size: 13
15209 AGTGGCCTGG
*
15219 TGCTCTCTTGGCC
1 TGCTCTCTTGACC
* *
15232 AGCTCTCTTGACT
1 TGCTCTCTTGACC
15245 TGCTCTC-TGACC
1 TGCTCTCTTGACC
15257 TGCTCTC-TGACC
1 TGCTCTCTTGACC
15269 TGCTCTCTTGACC
1 TGCTCTCTTGACC
15282 T
1 T
15283 ATTCTCTAGA
Statistics
Matches: 45, Mismatches: 5, Indels: 2
0.87 0.10 0.04
Matches are distributed among these distances:
12 23 0.51
13 22 0.49
ACGTcount: A:0.08, C:0.38, G:0.17, T:0.38
Consensus pattern (13 bp):
TGCTCTCTTGACC
Left flanking sequence: Indices 14719 -- 15218
GCATCTCGAGCGAGTGGTTGACGGGCGCGGCTGCCGTGCGGATCGAGGGAACCGCATGGATCAGG
GTGAGCTGCGCCGCCCCACGAGTGAACTGCTTTAGCGTCATGGTAGGGTTGGACTTTTTTGATGA
AAAATTGCGCTACCAGTATGGTGAAAAGTGCGAGAAAAAAAAGATGGGTGGAAGGTGGGAAGGTG
GGAAGAAGGTGGGAAGAAGAGAGATTTGGGAGACGGGGATAAGAGAAGATGAGTAGGGGTGTTTG
GTGGTGTTTTATGTTATGAAAAAGTGTTTACTCGAAACTTTTGTTTTGGTGGTGTGTTTCGTGTT
TCGATTTGTGCCAATGTAAACCGTTTTACCGGATTTTATTGGACTCTCTACTAGTATTCTGGTGC
GACTCACAGGAAATTTTCGTCGGTGAATGGTGTTCGCGCTATGTAGAAAAAGCTCAGTGGAAAGC
ATGACCAAACATCAGGTGATCGGGCCAAATCCCAAAGTGGCCTGG
Right flanking sequence: Indices 15283 -- 15782
ATTCTCTAGACCAACTCTCCGAATCTGTCTACGTCACCCTCATTTTTAAACCCTACGTGGTCCAC
TAGTCTCATTCTCTTTCCCTACAGTGGACTGTTCTATTCGACCCGCTCCATGATCGCCATGTCGC
CGTTGCAGCATTAGGCACCCGACTCACAGCTGTCCCATTATGCGAACCGTAATTCCAACCCTATG
TGACGTGTTTACCTCGGCGACGGTCTAGGCGCATACCGGACTCCATCAGGCGGTCATGTCAGATA
TTTTACGCCCACGCGTGCCAACCCGCCTCGTGGACGGGTAGTTAGCATGTCTGGAGCCATGAAGA
CGGTCTTAACTAGCCCTGGTCGCCATTTTCTGTCTCTCTGTACCCTTTCCTGTCTGCGTTGGTAC
GCCCAGATTATATGTATTGTCTATGTTTATGACTAACAACACGACAAAGATCGTCTCCGTGCCCT
GGTTGCATTAAACTCTCAGACAACGCGGTCGTCAGCCGTTTATAA
Found at i:15280 original size:25 final size:26
Alignment explanation
Indices: 15219--15282 Score: 87
Period size: 25 Copynumber: 2.5 Consensus size: 26
15209 AGTGGCCTGG
* * *
15219 TGCTCTCTTGGCCAGCTCTCTTGACT
1 TGCTCTCTTGACCTGCTCTCTTGACC
15245 TGCTCTC-TGACCTGCTCTC-TGACC
1 TGCTCTCTTGACCTGCTCTCTTGACC
15269 TGCTCTCTTGACCT
1 TGCTCTCTTGACCT
15283 ATTCTCTAGA
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
24 11 0.32
25 16 0.47
26 7 0.21
ACGTcount: A:0.08, C:0.38, G:0.17, T:0.38
Consensus pattern (26 bp):
TGCTCTCTTGACCTGCTCTCTTGACC
Left flanking sequence: Indices 14719 -- 15218
GCATCTCGAGCGAGTGGTTGACGGGCGCGGCTGCCGTGCGGATCGAGGGAACCGCATGGATCAGG
GTGAGCTGCGCCGCCCCACGAGTGAACTGCTTTAGCGTCATGGTAGGGTTGGACTTTTTTGATGA
AAAATTGCGCTACCAGTATGGTGAAAAGTGCGAGAAAAAAAAGATGGGTGGAAGGTGGGAAGGTG
GGAAGAAGGTGGGAAGAAGAGAGATTTGGGAGACGGGGATAAGAGAAGATGAGTAGGGGTGTTTG
GTGGTGTTTTATGTTATGAAAAAGTGTTTACTCGAAACTTTTGTTTTGGTGGTGTGTTTCGTGTT
TCGATTTGTGCCAATGTAAACCGTTTTACCGGATTTTATTGGACTCTCTACTAGTATTCTGGTGC
GACTCACAGGAAATTTTCGTCGGTGAATGGTGTTCGCGCTATGTAGAAAAAGCTCAGTGGAAAGC
ATGACCAAACATCAGGTGATCGGGCCAAATCCCAAAGTGGCCTGG
Right flanking sequence: Indices 15283 -- 15782
ATTCTCTAGACCAACTCTCCGAATCTGTCTACGTCACCCTCATTTTTAAACCCTACGTGGTCCAC
TAGTCTCATTCTCTTTCCCTACAGTGGACTGTTCTATTCGACCCGCTCCATGATCGCCATGTCGC
CGTTGCAGCATTAGGCACCCGACTCACAGCTGTCCCATTATGCGAACCGTAATTCCAACCCTATG
TGACGTGTTTACCTCGGCGACGGTCTAGGCGCATACCGGACTCCATCAGGCGGTCATGTCAGATA
TTTTACGCCCACGCGTGCCAACCCGCCTCGTGGACGGGTAGTTAGCATGTCTGGAGCCATGAAGA
CGGTCTTAACTAGCCCTGGTCGCCATTTTCTGTCTCTCTGTACCCTTTCCTGTCTGCGTTGGTAC
GCCCAGATTATATGTATTGTCTATGTTTATGACTAACAACACGACAAAGATCGTCTCCGTGCCCT
GGTTGCATTAAACTCTCAGACAACGCGGTCGTCAGCCGTTTATAA
Found at i:15288 original size:25 final size:24
Alignment explanation
Indices: 15234--15294 Score: 68
Period size: 25 Copynumber: 2.4 Consensus size: 24
15224 TCTTGGCCAG
* *
15234 CTCTCTTGACTTGCTCTCTGACCTG
1 CTCTC-TGACCTGCTCTCTGACCTA
15259 CTCTCTGACCTGCTCTCTTGACCTA
1 CTCTCTGACCTGCTCTC-TGACCTA
*
15284 TTCTCTAGACC
1 CTCTCT-GACC
15295 AACTCTCCGA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
24 11 0.35
25 16 0.52
26 4 0.13
ACGTcount: A:0.11, C:0.38, G:0.13, T:0.38
Consensus pattern (24 bp):
CTCTCTGACCTGCTCTCTGACCTA
Left flanking sequence: Indices 14734 -- 15233
GGTTGACGGGCGCGGCTGCCGTGCGGATCGAGGGAACCGCATGGATCAGGGTGAGCTGCGCCGCC
CCACGAGTGAACTGCTTTAGCGTCATGGTAGGGTTGGACTTTTTTGATGAAAAATTGCGCTACCA
GTATGGTGAAAAGTGCGAGAAAAAAAAGATGGGTGGAAGGTGGGAAGGTGGGAAGAAGGTGGGAA
GAAGAGAGATTTGGGAGACGGGGATAAGAGAAGATGAGTAGGGGTGTTTGGTGGTGTTTTATGTT
ATGAAAAAGTGTTTACTCGAAACTTTTGTTTTGGTGGTGTGTTTCGTGTTTCGATTTGTGCCAAT
GTAAACCGTTTTACCGGATTTTATTGGACTCTCTACTAGTATTCTGGTGCGACTCACAGGAAATT
TTCGTCGGTGAATGGTGTTCGCGCTATGTAGAAAAAGCTCAGTGGAAAGCATGACCAAACATCAG
GTGATCGGGCCAAATCCCAAAGTGGCCTGGTGCTCTCTTGGCCAG
Right flanking sequence: Indices 15295 -- 15794
AACTCTCCGAATCTGTCTACGTCACCCTCATTTTTAAACCCTACGTGGTCCACTAGTCTCATTCT
CTTTCCCTACAGTGGACTGTTCTATTCGACCCGCTCCATGATCGCCATGTCGCCGTTGCAGCATT
AGGCACCCGACTCACAGCTGTCCCATTATGCGAACCGTAATTCCAACCCTATGTGACGTGTTTAC
CTCGGCGACGGTCTAGGCGCATACCGGACTCCATCAGGCGGTCATGTCAGATATTTTACGCCCAC
GCGTGCCAACCCGCCTCGTGGACGGGTAGTTAGCATGTCTGGAGCCATGAAGACGGTCTTAACTA
GCCCTGGTCGCCATTTTCTGTCTCTCTGTACCCTTTCCTGTCTGCGTTGGTACGCCCAGATTATA
TGTATTGTCTATGTTTATGACTAACAACACGACAAAGATCGTCTCCGTGCCCTGGTTGCATTAAA
CTCTCAGACAACGCGGTCGTCAGCCGTTTATAAATACTGTCTTGT
Found at i:17921 original size:20 final size:20
Alignment explanation
Indices: 17884--17926 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
17874 TTTTATCACT
* *
17884 TTCCGCCCATTTTCACCAAA
1 TTCCGACCAATTTCACCAAA
*
17904 TTCCGACCAATTTGACCAAA
1 TTCCGACCAATTTCACCAAA
17924 TTC
1 TTC
17927 GGATTCAAAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.28, C:0.35, G:0.07, T:0.30
Consensus pattern (20 bp):
TTCCGACCAATTTCACCAAA
Left flanking sequence: Indices 17384 -- 17883
GTGATGACCCACGGACCGCTCCAAATGCCCTTCTTCATCCGAGTTGCAACCCATATCACCAACTA
CGGCGACTTCTCGTACGATTGGCACGCGCTTGTGGCGATGATGGACACCACGCTTGCCCAGGGCG
CACTGTCGCGGGGTCTGGCCCAGTTCCACTTGCTCATATCCCACTCCGGGGACGACTTTCACAAC
AAAGTCTACGACAAGAACCCGGTGGCACTCGCGCTTCTCAACGTGTACGCGGCTTACCAGGTGAT
GTTCCGCGTCTCTGTCGATCCACGGGACAATATCTGGCGGGACTATATGCTCTGGTACCAGCAGC
ACTCGCACCAGGAGTGGTTTGCCTCCTGGGAACCGGCGTTGTTCGAGCTCGTGGTCGAGAAGGGG
TACTTTTTCCCGGCCTATGGAGTTGTGGCAGGCTTCGATCCCGACATTTGTAACATTTTAGAGCA
TTAGTTTAGTGGTTGACTTGCCCAATTTGACAAAATTTTATCACT
Right flanking sequence: Indices 17927 -- 18426
GGATTCAAATCCAGGCGTTTCCACAAAACCCGCCCTTTTCCCCCAGATTCGTCGCCAAGACCCCT
AGCAACCACAAAAACACCCCGACCCGCTGCCAATGTCTCTCGGCCGTTGCCACGTGCATTAATCC
ATCTAAATATCGCTAATCTCGTCGCCAGGGGCGTCAACACAAAACCAAAGAATTTCACCCGTTTG
GGCCGAGGCGCCATCGCTTGCGAATAAGCGAGTAATGGCGCCACGTCCAGGACCTACCCTGTGAA
ATGTCGCCATTGTCACACAATGCCAACGGCTCAGGCGACCCCTGAGTCTGTGCACTCCCCCCACG
ATCACGAGCAGGTGATGCGATAATCCCTGGTTATTTATAGTCCCTGGGGTCGACGACAGCTCGCG
CTGTCGCCCGGAGGTTGCTGGCTACAACGCAACCAGCCGTCTCAGGCAATATTAGCCGGGATTAG
CGATTGTGCCTCATCGGTTCGAAACTAGCCTGTTTCACCGCAAAA
Found at i:20954 original size:8 final size:8
Alignment explanation
Indices: 20936--20992 Score: 56
Period size: 8 Copynumber: 8.0 Consensus size: 8
20926 TATTTACTTA
20936 ACTTATT-
1 ACTTATTC
20943 ACTTATTC
1 ACTTATTC
20951 ACTTA-TC
1 ACTTATTC
*
20958 ACTTATTT
1 ACTTATTC
20966 AC---TTC
1 ACTTATTC
20971 ACTTATTC
1 ACTTATTC
20979 AC--ATTC
1 ACTTATTC
20985 ACTTATTC
1 ACTTATTC
20993 TCTTCGAGCT
Statistics
Matches: 41, Mismatches: 2, Indels: 13
0.73 0.04 0.23
Matches are distributed among these distances:
5 4 0.10
6 6 0.15
7 14 0.34
8 17 0.41
ACGTcount: A:0.26, C:0.25, G:0.00, T:0.49
Consensus pattern (8 bp):
ACTTATTC
Left flanking sequence: Indices 20436 -- 20935
TCGGCGGTGGCCGTCAACATCGGCCAGCTTTTGTTTCAGACCACTGGTTTGGCCTACTACTCGAG
CTACGTCGACCTGTTGGACCGCCTGAGCCCCGACTACCGTATGCTCTCGAACATCCCCGGGAAGC
TGGTGCTCCAGCTGCCCGAGATCATCCGCAAGCTCCCCGAGAGCGTGCGGGGCGACGTCATCGAC
ATCATTTTACGCGCTCTCCACAACGTGTTCTACTTTTGTTTGGCGTTGCTGTTGATGCTGTTTTT
GTGCTCGCTTTTCACCACCAACCTGAAGGTGCCTAAGGACTCCGAGGTGGAGATGAAGCGAAAGG
AAGAGGACGCCGAGGCGTTCAACAGGGCAGAGGAAGCCTCAGTCATGAAGAACGAAGCATAATGA
GCAGGGAGCCATTAATACATAGCATAACGCAATACCCTGAGAAAGTGTAGGTAAATTTAATATAG
TTCGCACCAGGCAAGCCATCTAAGCTAGTATCACTTATTTACTTA
Right flanking sequence: Indices 20993 -- 21492
TCTTCGAGCTTTATTTTGCAGTGCTCGAGTTAGCCTCGCATTGCAGCTTGCCGACGCTATCGCTA
TTTAAGCCCGGTTCCAGTCGTCGCTTCGCTGGCCCTTCCCGCTTGTTGTACCCTTCCACCTCCGC
TTGTGGTATCCCTCCCGCTTACTGTAGCCGTGTCTTCCCACTTTTCAGCTCTTTTGTCCATTGCC
CCATGGGCTCACTTACCCCGGCTTCTACGTGCGTTTTCCTGCCGTCCCGAGCCACGGTGCGTAGA
CCTCGATACCAATTGCTAGGGCCCGATTCGCACACCTTCGGGCAATATCGGAACGACCAGGTGGG
GTCAACCCCCACAACCGTTTAGCGGGCAGAAGTGGGGGGAGGGTATGAGCGTTGGGCCCCACCCG
TCGGACTTCTGTCAATCGGCGTCGGTGGCCATGCATGAGGCGTGGGCCGTGCATGGTTTCCTGTG
CCTTGGAGATTAGCTGCCACCCTGTTCCGTTCGTCCAGAACACGC
Found at i:20956 original size:15 final size:15
Alignment explanation
Indices: 20936--20992 Score: 66
Period size: 15 Copynumber: 4.0 Consensus size: 15
20926 TATTTACTTA
*
20936 ACTTATTACTTATTC
1 ACTTATCACTTATTC
*
20951 ACTTATCACTTATTT
1 ACTTATCACTTATTC
20966 AC-T-TCACTTATTC
1 ACTTATCACTTATTC
*
20979 ACAT-TCACTTATTC
1 ACTTATCACTTATTC
20993 TCTTCGAGCT
Statistics
Matches: 38, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
13 11 0.29
14 12 0.32
15 15 0.39
ACGTcount: A:0.26, C:0.25, G:0.00, T:0.49
Consensus pattern (15 bp):
ACTTATCACTTATTC
Left flanking sequence: Indices 20436 -- 20935
TCGGCGGTGGCCGTCAACATCGGCCAGCTTTTGTTTCAGACCACTGGTTTGGCCTACTACTCGAG
CTACGTCGACCTGTTGGACCGCCTGAGCCCCGACTACCGTATGCTCTCGAACATCCCCGGGAAGC
TGGTGCTCCAGCTGCCCGAGATCATCCGCAAGCTCCCCGAGAGCGTGCGGGGCGACGTCATCGAC
ATCATTTTACGCGCTCTCCACAACGTGTTCTACTTTTGTTTGGCGTTGCTGTTGATGCTGTTTTT
GTGCTCGCTTTTCACCACCAACCTGAAGGTGCCTAAGGACTCCGAGGTGGAGATGAAGCGAAAGG
AAGAGGACGCCGAGGCGTTCAACAGGGCAGAGGAAGCCTCAGTCATGAAGAACGAAGCATAATGA
GCAGGGAGCCATTAATACATAGCATAACGCAATACCCTGAGAAAGTGTAGGTAAATTTAATATAG
TTCGCACCAGGCAAGCCATCTAAGCTAGTATCACTTATTTACTTA
Right flanking sequence: Indices 20993 -- 21492
TCTTCGAGCTTTATTTTGCAGTGCTCGAGTTAGCCTCGCATTGCAGCTTGCCGACGCTATCGCTA
TTTAAGCCCGGTTCCAGTCGTCGCTTCGCTGGCCCTTCCCGCTTGTTGTACCCTTCCACCTCCGC
TTGTGGTATCCCTCCCGCTTACTGTAGCCGTGTCTTCCCACTTTTCAGCTCTTTTGTCCATTGCC
CCATGGGCTCACTTACCCCGGCTTCTACGTGCGTTTTCCTGCCGTCCCGAGCCACGGTGCGTAGA
CCTCGATACCAATTGCTAGGGCCCGATTCGCACACCTTCGGGCAATATCGGAACGACCAGGTGGG
GTCAACCCCCACAACCGTTTAGCGGGCAGAAGTGGGGGGAGGGTATGAGCGTTGGGCCCCACCCG
TCGGACTTCTGTCAATCGGCGTCGGTGGCCATGCATGAGGCGTGGGCCGTGCATGGTTTCCTGTG
CCTTGGAGATTAGCTGCCACCCTGTTCCGTTCGTCCAGAACACGC
Found at i:20965 original size:35 final size:34
Alignment explanation
Indices: 20919--20990 Score: 110
Period size: 35 Copynumber: 2.1 Consensus size: 34
20909 TCTAAGCTAG
20919 TATCACTTATTTACTTAACTTATT-ACTTATTCACT
1 TATCACTTATTTACTTAACTTATTCAC--ATTCACT
*
20954 TATCACTTATTTACTTCACTTATTCACATTCACT
1 TATCACTTATTTACTTAACTTATTCACATTCACT
20988 TAT
1 TAT
20991 TCTCTTCGAG
Statistics
Matches: 35, Mismatches: 1, Indels: 3
0.90 0.03 0.08
Matches are distributed among these distances:
34 10 0.29
35 23 0.66
36 2 0.06
ACGTcount: A:0.28, C:0.22, G:0.00, T:0.50
Consensus pattern (34 bp):
TATCACTTATTTACTTAACTTATTCACATTCACT
Left flanking sequence: Indices 20419 -- 20918
TCTACAAAACGTTCATGTCGGCGGTGGCCGTCAACATCGGCCAGCTTTTGTTTCAGACCACTGGT
TTGGCCTACTACTCGAGCTACGTCGACCTGTTGGACCGCCTGAGCCCCGACTACCGTATGCTCTC
GAACATCCCCGGGAAGCTGGTGCTCCAGCTGCCCGAGATCATCCGCAAGCTCCCCGAGAGCGTGC
GGGGCGACGTCATCGACATCATTTTACGCGCTCTCCACAACGTGTTCTACTTTTGTTTGGCGTTG
CTGTTGATGCTGTTTTTGTGCTCGCTTTTCACCACCAACCTGAAGGTGCCTAAGGACTCCGAGGT
GGAGATGAAGCGAAAGGAAGAGGACGCCGAGGCGTTCAACAGGGCAGAGGAAGCCTCAGTCATGA
AGAACGAAGCATAATGAGCAGGGAGCCATTAATACATAGCATAACGCAATACCCTGAGAAAGTGT
AGGTAAATTTAATATAGTTCGCACCAGGCAAGCCATCTAAGCTAG
Right flanking sequence: Indices 20991 -- 21490
TCTCTTCGAGCTTTATTTTGCAGTGCTCGAGTTAGCCTCGCATTGCAGCTTGCCGACGCTATCGC
TATTTAAGCCCGGTTCCAGTCGTCGCTTCGCTGGCCCTTCCCGCTTGTTGTACCCTTCCACCTCC
GCTTGTGGTATCCCTCCCGCTTACTGTAGCCGTGTCTTCCCACTTTTCAGCTCTTTTGTCCATTG
CCCCATGGGCTCACTTACCCCGGCTTCTACGTGCGTTTTCCTGCCGTCCCGAGCCACGGTGCGTA
GACCTCGATACCAATTGCTAGGGCCCGATTCGCACACCTTCGGGCAATATCGGAACGACCAGGTG
GGGTCAACCCCCACAACCGTTTAGCGGGCAGAAGTGGGGGGAGGGTATGAGCGTTGGGCCCCACC
CGTCGGACTTCTGTCAATCGGCGTCGGTGGCCATGCATGAGGCGTGGGCCGTGCATGGTTTCCTG
TGCCTTGGAGATTAGCTGCCACCCTGTTCCGTTCGTCCAGAACAC
Found at i:20971 original size:20 final size:20
Alignment explanation
Indices: 20919--20976 Score: 63
Period size: 20 Copynumber: 3.1 Consensus size: 20
20909 TCTAAGCTAG
*
20919 TATCACTTATTTACTTAAC-
1 TATCACTTATTTACTTCACT
*
20938 T-T-A-TTACTTA-TTCACT
1 TATCACTTATTTACTTCACT
20954 TATCACTTATTTACTTCACT
1 TATCACTTATTTACTTCACT
20974 TAT
1 TAT
20977 TCACATTCAC
Statistics
Matches: 31, Mismatches: 3, Indels: 9
0.72 0.07 0.21
Matches are distributed among these distances:
15 4 0.13
16 7 0.23
17 2 0.06
18 2 0.06
19 7 0.23
20 9 0.29
ACGTcount: A:0.28, C:0.21, G:0.00, T:0.52
Consensus pattern (20 bp):
TATCACTTATTTACTTCACT
Left flanking sequence: Indices 20419 -- 20918
TCTACAAAACGTTCATGTCGGCGGTGGCCGTCAACATCGGCCAGCTTTTGTTTCAGACCACTGGT
TTGGCCTACTACTCGAGCTACGTCGACCTGTTGGACCGCCTGAGCCCCGACTACCGTATGCTCTC
GAACATCCCCGGGAAGCTGGTGCTCCAGCTGCCCGAGATCATCCGCAAGCTCCCCGAGAGCGTGC
GGGGCGACGTCATCGACATCATTTTACGCGCTCTCCACAACGTGTTCTACTTTTGTTTGGCGTTG
CTGTTGATGCTGTTTTTGTGCTCGCTTTTCACCACCAACCTGAAGGTGCCTAAGGACTCCGAGGT
GGAGATGAAGCGAAAGGAAGAGGACGCCGAGGCGTTCAACAGGGCAGAGGAAGCCTCAGTCATGA
AGAACGAAGCATAATGAGCAGGGAGCCATTAATACATAGCATAACGCAATACCCTGAGAAAGTGT
AGGTAAATTTAATATAGTTCGCACCAGGCAAGCCATCTAAGCTAG
Right flanking sequence: Indices 20977 -- 21476
TCACATTCACTTATTCTCTTCGAGCTTTATTTTGCAGTGCTCGAGTTAGCCTCGCATTGCAGCTT
GCCGACGCTATCGCTATTTAAGCCCGGTTCCAGTCGTCGCTTCGCTGGCCCTTCCCGCTTGTTGT
ACCCTTCCACCTCCGCTTGTGGTATCCCTCCCGCTTACTGTAGCCGTGTCTTCCCACTTTTCAGC
TCTTTTGTCCATTGCCCCATGGGCTCACTTACCCCGGCTTCTACGTGCGTTTTCCTGCCGTCCCG
AGCCACGGTGCGTAGACCTCGATACCAATTGCTAGGGCCCGATTCGCACACCTTCGGGCAATATC
GGAACGACCAGGTGGGGTCAACCCCCACAACCGTTTAGCGGGCAGAAGTGGGGGGAGGGTATGAG
CGTTGGGCCCCACCCGTCGGACTTCTGTCAATCGGCGTCGGTGGCCATGCATGAGGCGTGGGCCG
TGCATGGTTTCCTGTGCCTTGGAGATTAGCTGCCACCCTGTTCCG
Found at i:22037 original size:16 final size:16
Alignment explanation
Indices: 22016--22052 Score: 65
Period size: 16 Copynumber: 2.3 Consensus size: 16
22006 TGGCCCACAA
*
22016 CCAGTGATCCACCGGT
1 CCAGTGATCCACCGGC
22032 CCAGTGATCCACCGGC
1 CCAGTGATCCACCGGC
22048 CCAGT
1 CCAGT
22053 ACTAACCCCA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.19, C:0.41, G:0.24, T:0.16
Consensus pattern (16 bp):
CCAGTGATCCACCGGC
Left flanking sequence: Indices 21516 -- 22015
TAGAGCCGCCACGAGAAATTGGCCGGGTGTTACAACCCACCCCCCGAGCCACAACGGCCGTGGGT
TCCACCTCCGTCAGCCTCGCCCGTGCCTAGGCGAGCTGCAGAGACACGGCAAAAAATAAAGAGGG
GTAGTTATTCCGAGTTCAACCGGGGGATGGCCCCACGTAGCGGGAACCGGTGTCGGCGGCGTCGG
GCTTATAAACGGGCGATCTCTCCGATTCTCCAGCCCCACCAGGTATTTTTCACCCACATCACCCG
ACATCCTTTGCTCCGGGGCTTTACTCCGCTAACGGCGCCGCCGCACATTGTTTAGCATTAAAAAA
TCCTTCAGCCGTTTTATGTCCCATAGCCCCTGTTAGCGATGTCAAATCCAAGTTATCCGTAAGTA
GCCACCCAGAGGCCCTCCCAATGGGGCTGGCAGCGTGGTGGGAGTGGTGCTAGCCCCACATCCAC
CGGCGCTGGCCCAATATCACATGATCCGATGGGGATGGCCCACAA
Right flanking sequence: Indices 22053 -- 22552
ACTAACCCCAGCTTCTGGTATGGAGGAGCGGCACTGATGATTGCCTGTATGTGCACCCACCCGCT
CGATCTCGCCAAGGTCCGGCTCCAGACCGCGGCCAAGCCCGGCCAGGGCCTCATCTCGATGGTTG
TGCAAATCATCCGCAACGAGGGGTTCTTCAAGATCTACCTGGGTCTCTCGGCCCTGTTGCTCCGC
CAGGCCACCTACCTGACCACCCGGTTCGGGGTGTACGAGTACCTCAAAGAATTCTACGTGGGCCA
CTACCACCGCCAGCCCACCACGTTGGTGTTACTCCCGATGTCGATGACGGCAGGCGCCCTCGGTG
GGCTCATTGGCAACCCGCTGGACGTCGTCAACATCCGGATGCAGAACGACAAGGCACTTCCCCTC
GACCAGCGTCGTAACTACCGCAATGTGGTTGACGGTCTCTATAGAATCACCACCACCGAGGGGGT
GGGCTCGCTCTTCCGCGGGTTGGCCCCCAACTTGACCCGTGGCGT
Found at i:23187 original size:16 final size:18
Alignment explanation
Indices: 23166--23204 Score: 55
Period size: 16 Copynumber: 2.3 Consensus size: 18
23156 CCCTGAGTGG
23166 AATGGTGGGTT-GTTG-T
1 AATGGTGGGTTGGTTGTT
*
23182 AATGGTTGGTTGGTTGTT
1 AATGGTGGGTTGGTTGTT
23200 AATGG
1 AATGG
23205 CTGATTGTAC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 10 0.50
17 4 0.20
18 6 0.30
ACGTcount: A:0.15, C:0.00, G:0.41, T:0.44
Consensus pattern (18 bp):
AATGGTGGGTTGGTTGTT
Left flanking sequence: Indices 22666 -- 23165
GCCTCGTGGCCACCACCATCTGTTCGCCCGCGGACGTGGTCAAGACCCGGATCATGAACGCCAAG
GGCAAGAACAGCGGGGCCGTCACCATCCTCATGGACGCGGTGCGCAACGAGGGTCCCGGGTTCAT
GTTCCGGGGGTGGTTGCCGTCGTTCATCCGGTTGGGCCCCCACACCATCGTCACGTTTTTGGCGC
TTGAGCAGTTGCGCAAGTACCGTGTAGGCATGCCCCGGTTGGCGCGGCCGGCGGCGTTGTAGTCA
TTAGCATTAATAGATAATTGAGATAGTTGATGAAGGGTGTGTTACTGCTACTGTAGATGTTGGTT
TACGCGTGTTAGGGTGGTGGTTTTTGGTGGCTTTTGGTGGGTTTTTGATGGCATTCGATGGCTTT
CAACCGTCAAGGGGTGTTTTGTTCTTGTGGTGAGATGGTTGATAGCCTGTTTCAGCTACATGCAT
GGTACGCGTGGTGATTAGGGGGTTATGGCATTGAACCCTGAGTGG
Right flanking sequence: Indices 23205 -- 23704
CTGATTGTACGGGTGGTGAGTAGTACATGGTTAGTTAACTGAATAACAATATTGATATTCATCGA
AATGTTCCCATGTTAGTGAACGTAACGGTAGCACGTTTGTAAGTCAGTTGATACTATCACAAATT
AAGGTCTCATAGTAGCACAACGGGCCCACATCCACAGTCTTCCACTCTCTCGGTTTGAACGATAC
TTTTCGTCGCCAACCCTACACAAACCACAACAGTGGGGCCTTTGCCCACCCAAATAGGCAAATTC
GCCAATTATCGTATTTTCTATGTAATGCGTGTTTAAACCTGGATGTTGTCCAACTCGGCCTTCTC
GAAAGCCTCCTTCTCGGCCTCCAAGATGTAGGGGATCAAGTAGTGGTCGTCCTGCTCGGGCTGGA
CGGCCTTGGCAGGGGGCAACAACTCGTGGGACAAAGCCAACTGGTGGGCAGTGATCTGGCGGTAC
ACACGGGCGTACTTGTCCTCAGCGGGCAAACGGTGGATGGCCTTC
Found at i:29229 original size:11 final size:11
Alignment explanation
Indices: 29215--29240 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
29205 GGTGTGTGTA
29215 GTGGGGGTTTG
1 GTGGGGGTTTG
29226 GTGGGGGTTTG
1 GTGGGGGTTTG
29237 GTGG
1 GTGG
29241 TTGGTGGTGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.00, C:0.00, G:0.65, T:0.35
Consensus pattern (11 bp):
GTGGGGGTTTG
Left flanking sequence: Indices 28715 -- 29214
ACCACGTCGCCCACGCTCAACACGTAGCTAGCAGCCTGGGCGTCGGTGATCTCGGGCGCAAAACC
CAGCACCATCTCGTTGACCTCCACCGAGGTCGGGTGGGCAATCCCCTTCTCGCGCACCAGCTTGA
ACCCCTTGGCAAGCAAACGGGCGATGTAGGAGTCTGTGAGCACGCAGAGCTCGGGGATGGTGGGA
CGCTGCGGGCTCGCGATGAGCTGGCCAGCGTACACAAGGGCTGTCTGGGCGATCTGGCCAGCCAT
GCGGTATTTCTCTAGCACATGGGCGTCCAACACGTTCTTGGTGTGCAACAACACGTCGGCATCGT
CCTGGTGCACCGCTACTTGCATTGTGGGGGGTAGTGGTGGTGGTTGATTTGAGATGAGCTTCGCG
ATGCGAAAATAGGCGGGAGTGTGTAGGGGAAAAGATGAAAGAGGTGAAAAGAAGGGATGATGAGA
GGAGGAGAGGATGTTGTGTGTGTGTGTGTGGTTCTGGTGTGTGTA
Right flanking sequence: Indices 29241 -- 29740
TTGGTGGTGTGGTACTGTGGTTGTTGGTTTTATGGGTGGTTGTATACGGGAGATGGTTTGAGGTT
TGAAAAGTAGTAGAGAAAGTACGCGATAAGTGGAAAAGACAGCGTGGGAGTTGTAAACTGTTGAT
TTGGTGGTATTTCACTATGTGTCTTTCTTTTGAGGTGTTTATCTTGATTGTTCGTCTTTGCTACG
TTGTCTCATCACCGACCCGATTGTGAAAAAATCATGGCAGACAATGGTCGTGAAAAATTTCGAAA
AGACAGGCTAAGAGCCTTTCAAAGTTGATTGGAGTTCTTTGAAGCCTCTCTCGAACACAATTGTG
TAGTCACCCAGCCTTTCAGCCAGCCTTTCAGCTATTGTTAACCCTTTTCTGTGTGGGTTACCACT
GATGGCTTTAAACTAGCTCTCGCTGTAGTTCCACAACCTCACAAAGGTACAACTACATCGAAACT
CCATACAATCCACCCCTCTTTTCACTGGCCTCTTTTCACTGGCCT
Found at i:29590 original size:12 final size:12
Alignment explanation
Indices: 29573--29597 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
29563 GTGTAGTCAC
29573 CCAGCCTTTCAG
1 CCAGCCTTTCAG
29585 CCAGCCTTTCAG
1 CCAGCCTTTCAG
29597 C
1 C
29598 TATTGTTAAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.44, G:0.16, T:0.24
Consensus pattern (12 bp):
CCAGCCTTTCAG
Left flanking sequence: Indices 29073 -- 29572
GTGGTGGTGGTTGATTTGAGATGAGCTTCGCGATGCGAAAATAGGCGGGAGTGTGTAGGGGAAAA
GATGAAAGAGGTGAAAAGAAGGGATGATGAGAGGAGGAGAGGATGTTGTGTGTGTGTGTGTGGTT
CTGGTGTGTGTAGTGGGGGTTTGGTGGGGGTTTGGTGGTTGGTGGTGTGGTACTGTGGTTGTTGG
TTTTATGGGTGGTTGTATACGGGAGATGGTTTGAGGTTTGAAAAGTAGTAGAGAAAGTACGCGAT
AAGTGGAAAAGACAGCGTGGGAGTTGTAAACTGTTGATTTGGTGGTATTTCACTATGTGTCTTTC
TTTTGAGGTGTTTATCTTGATTGTTCGTCTTTGCTACGTTGTCTCATCACCGACCCGATTGTGAA
AAAATCATGGCAGACAATGGTCGTGAAAAATTTCGAAAAGACAGGCTAAGAGCCTTTCAAAGTTG
ATTGGAGTTCTTTGAAGCCTCTCTCGAACACAATTGTGTAGTCAC
Right flanking sequence: Indices 29598 -- 30097
TATTGTTAACCCTTTTCTGTGTGGGTTACCACTGATGGCTTTAAACTAGCTCTCGCTGTAGTTCC
ACAACCTCACAAAGGTACAACTACATCGAAACTCCATACAATCCACCCCTCTTTTCACTGGCCTC
TTTTCACTGGCCTCTTTACGCTCCCCAAACCCCCAAACCACACAACATCCTACCTTTTCCCATTA
ACTACACACTCAAAACTTCTCGCCCTGGATCGTCGCCACCACCCGCCGGGTGTGCTGGTAGGTCC
GGAACTCCATCAAGTAGATCCCCTGCCAGGTGCCGAGCGCCAACCGCCCGTTCTCGATCGGAATC
GTAAGCGACACCCCCACCAACAGCGACTTGACGTGGCCCGGCATGTCGTCGGGACCCTCGTCGTC
GTGGATGTAAAAGTCGCCCTCGGGAGCCACCCGGTCCATCAGCGCCGTCATGTCCTTGCGCACCG
TCGGGTCACAGTTCTCGTTGAGCAGCAACGCCGCCAGGGTGTGCT
Found at i:29729 original size:14 final size:14
Alignment explanation
Indices: 29710--29744 Score: 70
Period size: 14 Copynumber: 2.5 Consensus size: 14
29700 ACAATCCACC
29710 CCTCTTTTCACTGG
1 CCTCTTTTCACTGG
29724 CCTCTTTTCACTGG
1 CCTCTTTTCACTGG
29738 CCTCTTT
1 CCTCTTT
29745 ACGCTCCCCA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.06, C:0.37, G:0.11, T:0.46
Consensus pattern (14 bp):
CCTCTTTTCACTGG
Left flanking sequence: Indices 29210 -- 29709
GTGTAGTGGGGGTTTGGTGGGGGTTTGGTGGTTGGTGGTGTGGTACTGTGGTTGTTGGTTTTATG
GGTGGTTGTATACGGGAGATGGTTTGAGGTTTGAAAAGTAGTAGAGAAAGTACGCGATAAGTGGA
AAAGACAGCGTGGGAGTTGTAAACTGTTGATTTGGTGGTATTTCACTATGTGTCTTTCTTTTGAG
GTGTTTATCTTGATTGTTCGTCTTTGCTACGTTGTCTCATCACCGACCCGATTGTGAAAAAATCA
TGGCAGACAATGGTCGTGAAAAATTTCGAAAAGACAGGCTAAGAGCCTTTCAAAGTTGATTGGAG
TTCTTTGAAGCCTCTCTCGAACACAATTGTGTAGTCACCCAGCCTTTCAGCCAGCCTTTCAGCTA
TTGTTAACCCTTTTCTGTGTGGGTTACCACTGATGGCTTTAAACTAGCTCTCGCTGTAGTTCCAC
AACCTCACAAAGGTACAACTACATCGAAACTCCATACAATCCACC
Right flanking sequence: Indices 29745 -- 30244
ACGCTCCCCAAACCCCCAAACCACACAACATCCTACCTTTTCCCATTAACTACACACTCAAAACT
TCTCGCCCTGGATCGTCGCCACCACCCGCCGGGTGTGCTGGTAGGTCCGGAACTCCATCAAGTAG
ATCCCCTGCCAGGTGCCGAGCGCCAACCGCCCGTTCTCGATCGGAATCGTAAGCGACACCCCCAC
CAACAGCGACTTGACGTGGCCCGGCATGTCGTCGGGACCCTCGTCGTCGTGGATGTAAAAGTCGC
CCTCGGGAGCCACCCGGTCCATCAGCGCCGTCATGTCCTTGCGCACCGTCGGGTCACAGTTCTCG
TTGAGCAGCAACGCCGCCAGGGTGTGCTGCAAAAACAAGTTGACCAACCCCACCTTGTAGTCCTT
GAGCGGAGGCAATTGCTTCATGATCTCGTCGGTGACGAGATACAGCCCCTTCTTGCGGGGAGCCA
AGCTAAACTTCACCTGTTGCCACGACATGGTTTTTCGCACAGCAA
Found at i:30366 original size:15 final size:12
Alignment explanation
Indices: 30328--30377 Score: 100
Period size: 12 Copynumber: 4.2 Consensus size: 12
30318 GGTGGTGAAC
30328 GGTGAGCCTGGT
1 GGTGAGCCTGGT
30340 GGTGAGCCTGGT
1 GGTGAGCCTGGT
30352 GGTGAGCCTGGT
1 GGTGAGCCTGGT
30364 GGTGAGCCTGGT
1 GGTGAGCCTGGT
30376 GG
1 GG
30378 CTATGATGCG
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 38 1.00
ACGTcount: A:0.08, C:0.16, G:0.52, T:0.24
Consensus pattern (12 bp):
GGTGAGCCTGGT
Left flanking sequence: Indices 29828 -- 30327
CCACCACCCGCCGGGTGTGCTGGTAGGTCCGGAACTCCATCAAGTAGATCCCCTGCCAGGTGCCG
AGCGCCAACCGCCCGTTCTCGATCGGAATCGTAAGCGACACCCCCACCAACAGCGACTTGACGTG
GCCCGGCATGTCGTCGGGACCCTCGTCGTCGTGGATGTAAAAGTCGCCCTCGGGAGCCACCCGGT
CCATCAGCGCCGTCATGTCCTTGCGCACCGTCGGGTCACAGTTCTCGTTGAGCAGCAACGCCGCC
AGGGTGTGCTGCAAAAACAAGTTGACCAACCCCACCTTGTAGTCCTTGAGCGGAGGCAATTGCTT
CATGATCTCGTCGGTGACGAGATACAGCCCCTTCTTGCGGGGAGCCAAGCTAAACTTCACCTGTT
GCCACGACATGGTTTTTCGCACAGCAAGGTCGGGTCGGTTGTAGCAAGTGGTGGTACACGTGATG
CGCGGGAGGCTGGTGGTGCGTTGGTGGTGAGCGCTGGTGGTGAAC
Right flanking sequence: Indices 30378 -- 30877
CTATGATGCGAGCGGTGGTTTGAGCGCTGGTGGAGCTGGTGATAATAGAAGGTTGAGCTGCTTAA
TAGAAGTTTGAGCTACCGATTGACGCTGATCGAAGGTTACCTAAACGGGTATAATCGGAGTTTAG
TAGTTGATCTTAGCGAACAGTGCGTTATTGACACTATAGGCTATCTCGGGAGTATTGATTCACGG
ACTCTTTCGTGGAGTACTACTACGGCTCCTGTCACGTCTACTACTTAGGCTACCATCATGGACTA
CTTCAGCTCCTATCTTGGGCAAACATTTTGTAGGCTACCATTTCGTGGACTACCATCTCATGAGC
TAACCTGAGACACCATCCCATACTCTACTGTCACAACCAACACACAAACCCAAAGCTTCTGCTTC
ACCCCGCTCCACTACCTAACGCTCAGAGACTCACTGGTAATCCTTCAATGAGCCCACAACCCTAC
AACCCCACAACCCCAGCTTATCTTCCCTTAATCTCCTCATTCTTT
Found at i:33311 original size:16 final size:17
Alignment explanation
Indices: 33280--33318 Score: 62
Period size: 16 Copynumber: 2.4 Consensus size: 17
33270 GTGTAGAGGT
*
33280 GGTGGGTAGAAAGGTGG
1 GGTGGGAAGAAAGGTGG
33297 GGTGGGAAG-AAGGTGG
1 GGTGGGAAGAAAGGTGG
33313 GGTGGG
1 GGTGGG
33319 TGGTCACGGT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
16 13 0.62
17 8 0.38
ACGTcount: A:0.21, C:0.00, G:0.64, T:0.15
Consensus pattern (17 bp):
GGTGGGAAGAAAGGTGG
Left flanking sequence: Indices 32780 -- 33279
GGCTGTGCGCCTGAAAAATATTGTGCAGGAGGTAAATAAACCACGACATCCGTCATTGCGCGGCA
GCTACAGGAGCCGGGGGGTTGCGGTGTGTATGTGGGCGTGTGGGCGGGAGCCGGTGTGGGTGGCC
GAGCGGGTTGCCCGAGCACCGGGCGCTTTTGCGCTGGCGGGGCTTGGTGCCCCTTGCCAGTCGCG
ATTTTGCCTATTTGGGACGAACAACAACAGTGATCTGGCAACGAAGGTCGCGTCACCCGCGGTGG
CAGGTGGACACAGCCTAGCTGGCGTTTCTTTTGGGCCATTTGGGCCATTGACGGTTGCATTCATT
ACCCTTCCTGATCGGGGCAAATTGGTCGTGTCGCGGTCGCGGTGGCTGGGGGAAGCCCGAGCGCG
AGGCTACGTGTGGCGGTTAAAGACGTAGGGGTGTTGGTTAGGAGACCTGGTGAAGCGGTTTGTAG
AAGTGAAAGGCGATATAGTGGTGAGAAGGGCGTTGGTGTAGAGGT
Right flanking sequence: Indices 33319 -- 33818
TGGTCACGGTTGTTCTCGGGTGGGGCTGCTGGTCGTGTCTAGCTCGCAGCTCAGCCGAGTTCGGC
AGTTTCTTTTTATGGGCAGTTCCCGACACACCGGGCGTGTTTCAGCGAACAGTGGGGCGATAGTG
GGACAAAGAGGCTGTGAGTAGCCGAGTAGACGAGGACGTAGAGTGATAGGGTGGGGGAGCAGTGT
GTGGTAGAGGTGGTGGGGGTGGTGGTGGTGGAGTGGGTAGTACGCGTAGGTGAGTAAACCTTCGC
ACCACGGCTCTTCCAGCTTCTGTTTCACACCCTGTTTCACGCCTCTGATTCGCTGTTTTGGAAAA
ATATTTCAAAATATGTACAATACGAGACTAGTAAACATAGTGCTGTCCATGGCGCAGGAAACGTA
AACAGACACCCCGAGCACCGGAGATGGTAGGAAATGTGACCCCCCGGGCACACGCGTGGGGTGTT
GTGGCGAGCCGGCCGCGTTGACCTGCGGTGGGAGTGTCGTGATGC
Found at i:37209 original size:21 final size:21
Alignment explanation
Indices: 37184--37250 Score: 55
Period size: 21 Copynumber: 3.0 Consensus size: 21
37174 AACGGGAAAA
37184 GAGGGAAGGGAGAAGGGGAAG
1 GAGGGAAGGGAGAAGGGGAAG
*
37205 GAGGGAGAAGGGAAGGAGGGGGAAGG
1 GA-GG-GAAGGG-A-GAAGGGGAA-G
* *
37231 GATGG-AGGGGGAAGGGGAAG
1 GAGGGAAGGGAGAAGGGGAAG
37251 AAGGAAGAGG
Statistics
Matches: 37, Mismatches: 4, Indels: 11
0.71 0.08 0.21
Matches are distributed among these distances:
20 1 0.03
21 10 0.27
22 2 0.05
23 10 0.27
24 2 0.05
25 9 0.24
26 3 0.08
ACGTcount: A:0.34, C:0.00, G:0.64, T:0.01
Consensus pattern (21 bp):
GAGGGAAGGGAGAAGGGGAAG
Left flanking sequence: Indices 36684 -- 37183
GTTGTAGGCAAGGGCACGCCCGAACTTGGGCACGCGGGTGCGGTAGTGGATGCCGCCCTTGGTGT
GGAACTCGAGCAGCCGGTCGTTCTGGAGGTGGACCAGCTTCGTCCAGTCGTGCGAGAGGATGGTG
AAGTCGACGTTCTCGGCGTCGGTGTGGCGCTCGAACTTGAGCGAGAGGTTTTCAAAGTCGTACAC
GTGGATCTGGGGCTTGTAGGTACCCGTGGCCATCGCGAACTGCCCGTCCGGCGTCACTCTGATCC
GGTTCAGCGCCTCGGAGAACTCGAAGTCCTGGAGGAGGTCCACGCGATTGCGGTAATCCACGTCG
TGTTTGAGGTCACGTTTGCGCTTCTTGGCGATCCAGTCGGGAAGCGACCGGGCCACGTTGGTGCC
AGAGATCTGGTACACCGAGATGTCCCCCGCGGTCGTTGATTTGAGCACCATGGCGATAAGATGAG
ATGGAGCGGTTTTATGCGATGACCCGCGGGCTCGAAACGGGAAAA
Right flanking sequence: Indices 37251 -- 37750
AAGGAAGAGGGAGGGGGAGAATGGAATGGAAAGGAGAAGAGAAGAAGAGAGAGAAAAGGAATTTG
AGGGTGACGGGTTGGGGTGGTGGTAGGTTTGTTTGGAAGTGGGCGTAGTGAGTTTATAGGTTTTA
AGAGAAAATAGGTTTAGAAAAGCAAGTAGATGAAGCAAACGTTGTTATGTCATAGAATACACGTT
GTTGACAAACCAGCAAGCTCTCATTTTTCATCCATGTGTGTCATTTTTGCCACTGGATACTCATC
ACTGCCTACGGTAAGGGTCCCAATTATATGCAGGACACGAGCATCATGGAAACATAGTCCCAACG
TACGGGTCTAAACGCGAGATATCGGGGGTTCTGAGACCATAGAGTTGGTATAAAGGGCTTACAGA
GATGAACAAGCGCCTTAGTTTAGCTCCTGACGCGTGCAAACGCGTGGGAAGTGGCAACTGTATTT
GCAGTGCAACCACGGGTATATAGTGCTCAATACGACTCGTAAGCC
Found at i:37219 original size:15 final size:15
Alignment explanation
Indices: 37190--37276 Score: 81
Period size: 15 Copynumber: 5.9 Consensus size: 15
37180 AAAAGAGGGA
37190 AGGGAGAAGGGGAAGG
1 AGGGAGAA-GGGAAGG
37206 AGGGAGAAGGGAAGG
1 AGGGAGAAGGGAAGG
* *
37221 AGGGGGAAGGGATGG
1 AGGGAGAAGGGAAGG
* *
37236 AGGGGGAAGGGGAAGA
1 AGGGAGAA-GGGAAGG
*
37252 AGGAAG-AGGG-AGG
1 AGGGAGAAGGGAAGG
*
37265 -GGGAGAATGGAA
1 AGGGAGAAGGGAA
37277 TGGAAAGGAG
Statistics
Matches: 59, Mismatches: 9, Indels: 8
0.78 0.12 0.11
Matches are distributed among these distances:
12 4 0.07
13 5 0.08
14 4 0.07
15 29 0.49
16 17 0.29
ACGTcount: A:0.37, C:0.00, G:0.61, T:0.02
Consensus pattern (15 bp):
AGGGAGAAGGGAAGG
Left flanking sequence: Indices 36690 -- 37189
GGCAAGGGCACGCCCGAACTTGGGCACGCGGGTGCGGTAGTGGATGCCGCCCTTGGTGTGGAACT
CGAGCAGCCGGTCGTTCTGGAGGTGGACCAGCTTCGTCCAGTCGTGCGAGAGGATGGTGAAGTCG
ACGTTCTCGGCGTCGGTGTGGCGCTCGAACTTGAGCGAGAGGTTTTCAAAGTCGTACACGTGGAT
CTGGGGCTTGTAGGTACCCGTGGCCATCGCGAACTGCCCGTCCGGCGTCACTCTGATCCGGTTCA
GCGCCTCGGAGAACTCGAAGTCCTGGAGGAGGTCCACGCGATTGCGGTAATCCACGTCGTGTTTG
AGGTCACGTTTGCGCTTCTTGGCGATCCAGTCGGGAAGCGACCGGGCCACGTTGGTGCCAGAGAT
CTGGTACACCGAGATGTCCCCCGCGGTCGTTGATTTGAGCACCATGGCGATAAGATGAGATGGAG
CGGTTTTATGCGATGACCCGCGGGCTCGAAACGGGAAAAGAGGGA
Right flanking sequence: Indices 37277 -- 37776
TGGAAAGGAGAAGAGAAGAAGAGAGAGAAAAGGAATTTGAGGGTGACGGGTTGGGGTGGTGGTAG
GTTTGTTTGGAAGTGGGCGTAGTGAGTTTATAGGTTTTAAGAGAAAATAGGTTTAGAAAAGCAAG
TAGATGAAGCAAACGTTGTTATGTCATAGAATACACGTTGTTGACAAACCAGCAAGCTCTCATTT
TTCATCCATGTGTGTCATTTTTGCCACTGGATACTCATCACTGCCTACGGTAAGGGTCCCAATTA
TATGCAGGACACGAGCATCATGGAAACATAGTCCCAACGTACGGGTCTAAACGCGAGATATCGGG
GGTTCTGAGACCATAGAGTTGGTATAAAGGGCTTACAGAGATGAACAAGCGCCTTAGTTTAGCTC
CTGACGCGTGCAAACGCGTGGGAAGTGGCAACTGTATTTGCAGTGCAACCACGGGTATATAGTGC
TCAATACGACTCGTAAGCCGTAAAGCAACGAAGAACGCAGGCGTT
Found at i:39493 original size:33 final size:33
Alignment explanation
Indices: 39471--39547 Score: 88
Period size: 30 Copynumber: 2.4 Consensus size: 33
39461 CGAGGAGAAC
*
39471 GAAGAGGAGAACGAGGCGGAGAAAGAGAACGAA
1 GAAGACGAGAACGAGGCGGAGAAAGAGAACGAA
* *
39504 GAAGACGAGAAC--GG-GGAGGAAGAGAACGTA
1 GAAGACGAGAACGAGGCGGAGAAAGAGAACGAA
* *
39534 GAGGAAGAGAACGA
1 GAAGACGAGAACGA
39548 CGGAGAGAAG
Statistics
Matches: 37, Mismatches: 5, Indels: 5
0.79 0.11 0.11
Matches are distributed among these distances:
30 24 0.65
31 2 0.05
33 11 0.30
ACGTcount: A:0.47, C:0.09, G:0.43, T:0.01
Consensus pattern (33 bp):
GAAGACGAGAACGAGGCGGAGAAAGAGAACGAA
Left flanking sequence: Indices 38971 -- 39470
TGTTGGACAACCTGAACCAGGTGCTCCGCAACTCGGTGGTGGAGGCGTGTGGCAACATCGCAGTC
GACATGCTCGCGCTGGACCGCGACGCCGACGACGCCGACCCCGCGGTGGACGGGCTTTTGGACTT
GCTCCAGGAGCGGGTGTGCGATCTGAACCCGTTTGTGCGGCTGAAGGCGTTCCAGGCGCTCGCCA
AGATCGTGGCGCTTCCGGTGAAGCTTCCCCAGCGGCGGTTGGCGCTCGTGGCGCTTGCGGTGAGG
CTGTTGGACGACAAGCTGACGTTTGTGCGGCGCCACGCCATCAAGCTCTTGGCGGCGCTGATGCT
CAACCACCAGTTCCTGCCGAGCCGGTTGGAGCTGGCGGTGTGGAAGGCGCGGTTGGAGGCGGCGG
AGAAGGAGTTTGACGAGCTCACGGGCGAGGTGGACGCGGCGCAGCGGGCGTTCTTGCACCAGGAG
GGCGAGATGATGGACATAGACGAGGAGGGGGAGAACGAGGAGAAC
Right flanking sequence: Indices 39548 -- 40047
CGGAGAGAAGGGGGACGAGAACCAGGTGGAAGACGGCGAGCCCGTCCAGAACTCGAACCCGGTTC
CCAACCCGCTCACGCTCTTGCCCAACTACGAGGACATCATGCGGGCCAAGCTCCAGGTGCTGTAC
CTCACCGACGCGTGTGCGTTCATCGACGCCATCCACGCCGCCATCACCGTGCTCGAACGGCTCCT
TTTCTCGAAAAACAAGTTGGAAACCCTCGAGGCGATGGACTTTTTGGTGCTCGCGGACGCCTACG
GCATCAGCGCGGCTGCCAACGGGATCCGCAAGATGCTCCACTTGGTGTGGTCCAAGGCCACCTCG
GAGGAGGGGAAGCTGGTGCCCGCCCACCTCATCGACTGCTACCGCGAGCTCTTTCTCCAGCCGCC
GCCCGAGGTGGCTCTGGCGGAGCAGGCGGCCTACGTGGCCAAGAACTTGATCCAGCTCACCGAGG
GCGCGCTGGCGCTGGACTTGGCGTCGCTCGAGAAGCTCTTGGGGA
Found at i:39528 original size:15 final size:15
Alignment explanation
Indices: 39493--39546 Score: 63
Period size: 15 Copynumber: 3.6 Consensus size: 15
39483 GAGGCGGAGA
* *
39493 AAGAGAACGAAGAAG
1 AAGAGAACGGAGAGG
* *
39508 ACGAGAACGGGGAGG
1 AAGAGAACGGAGAGG
*
39523 AAGAGAACGTAGAGG
1 AAGAGAACGGAGAGG
39538 AAGAGAACG
1 AAGAGAACG
39547 ACGGAGAGAA
Statistics
Matches: 32, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
15 32 1.00
ACGTcount: A:0.48, C:0.09, G:0.41, T:0.02
Consensus pattern (15 bp):
AAGAGAACGGAGAGG
Left flanking sequence: Indices 38993 -- 39492
GCTCCGCAACTCGGTGGTGGAGGCGTGTGGCAACATCGCAGTCGACATGCTCGCGCTGGACCGCG
ACGCCGACGACGCCGACCCCGCGGTGGACGGGCTTTTGGACTTGCTCCAGGAGCGGGTGTGCGAT
CTGAACCCGTTTGTGCGGCTGAAGGCGTTCCAGGCGCTCGCCAAGATCGTGGCGCTTCCGGTGAA
GCTTCCCCAGCGGCGGTTGGCGCTCGTGGCGCTTGCGGTGAGGCTGTTGGACGACAAGCTGACGT
TTGTGCGGCGCCACGCCATCAAGCTCTTGGCGGCGCTGATGCTCAACCACCAGTTCCTGCCGAGC
CGGTTGGAGCTGGCGGTGTGGAAGGCGCGGTTGGAGGCGGCGGAGAAGGAGTTTGACGAGCTCAC
GGGCGAGGTGGACGCGGCGCAGCGGGCGTTCTTGCACCAGGAGGGCGAGATGATGGACATAGACG
AGGAGGGGGAGAACGAGGAGAACGAAGAGGAGAACGAGGCGGAGA
Right flanking sequence: Indices 39547 -- 40046
ACGGAGAGAAGGGGGACGAGAACCAGGTGGAAGACGGCGAGCCCGTCCAGAACTCGAACCCGGTT
CCCAACCCGCTCACGCTCTTGCCCAACTACGAGGACATCATGCGGGCCAAGCTCCAGGTGCTGTA
CCTCACCGACGCGTGTGCGTTCATCGACGCCATCCACGCCGCCATCACCGTGCTCGAACGGCTCC
TTTTCTCGAAAAACAAGTTGGAAACCCTCGAGGCGATGGACTTTTTGGTGCTCGCGGACGCCTAC
GGCATCAGCGCGGCTGCCAACGGGATCCGCAAGATGCTCCACTTGGTGTGGTCCAAGGCCACCTC
GGAGGAGGGGAAGCTGGTGCCCGCCCACCTCATCGACTGCTACCGCGAGCTCTTTCTCCAGCCGC
CGCCCGAGGTGGCTCTGGCGGAGCAGGCGGCCTACGTGGCCAAGAACTTGATCCAGCTCACCGAG
GGCGCGCTGGCGCTGGACTTGGCGTCGCTCGAGAAGCTCTTGGGG
Found at i:39544 original size:30 final size:30
Alignment explanation
Indices: 39453--39546 Score: 82
Period size: 30 Copynumber: 3.0 Consensus size: 30
39443 AGACGAGGAG
* * *
39453 GGGGAGAACGAGGA-GAACGAAGAGGAGAAC
1 GGGGAGAAAGAGAACGAA-GAAGAAGAGAAC
*
39483 GAGGCGGAGAAAGAGAACGAAGAAGACGAGAAC
1 --GG-GGAGAAAGAGAACGAAGAAGAAGAGAAC
* * *
39516 GGGGAGGAAGAGAACGTAGAGGAAGAGAAC
1 GGGGAGAAAGAGAACGAAGAAGAAGAGAAC
39546 G
1 G
39547 ACGGAGAGAA
Statistics
Matches: 53, Mismatches: 7, Indels: 6
0.80 0.11 0.09
Matches are distributed among these distances:
30 25 0.47
31 2 0.04
32 2 0.04
33 21 0.40
34 3 0.06
ACGTcount: A:0.45, C:0.10, G:0.45, T:0.01
Consensus pattern (30 bp):
GGGGAGAAAGAGAACGAAGAAGAAGAGAAC
Left flanking sequence: Indices 38953 -- 39452
TGGCCGCCGTCAAGCAGTTGTTGGACAACCTGAACCAGGTGCTCCGCAACTCGGTGGTGGAGGCG
TGTGGCAACATCGCAGTCGACATGCTCGCGCTGGACCGCGACGCCGACGACGCCGACCCCGCGGT
GGACGGGCTTTTGGACTTGCTCCAGGAGCGGGTGTGCGATCTGAACCCGTTTGTGCGGCTGAAGG
CGTTCCAGGCGCTCGCCAAGATCGTGGCGCTTCCGGTGAAGCTTCCCCAGCGGCGGTTGGCGCTC
GTGGCGCTTGCGGTGAGGCTGTTGGACGACAAGCTGACGTTTGTGCGGCGCCACGCCATCAAGCT
CTTGGCGGCGCTGATGCTCAACCACCAGTTCCTGCCGAGCCGGTTGGAGCTGGCGGTGTGGAAGG
CGCGGTTGGAGGCGGCGGAGAAGGAGTTTGACGAGCTCACGGGCGAGGTGGACGCGGCGCAGCGG
GCGTTCTTGCACCAGGAGGGCGAGATGATGGACATAGACGAGGAG
Right flanking sequence: Indices 39547 -- 40046
ACGGAGAGAAGGGGGACGAGAACCAGGTGGAAGACGGCGAGCCCGTCCAGAACTCGAACCCGGTT
CCCAACCCGCTCACGCTCTTGCCCAACTACGAGGACATCATGCGGGCCAAGCTCCAGGTGCTGTA
CCTCACCGACGCGTGTGCGTTCATCGACGCCATCCACGCCGCCATCACCGTGCTCGAACGGCTCC
TTTTCTCGAAAAACAAGTTGGAAACCCTCGAGGCGATGGACTTTTTGGTGCTCGCGGACGCCTAC
GGCATCAGCGCGGCTGCCAACGGGATCCGCAAGATGCTCCACTTGGTGTGGTCCAAGGCCACCTC
GGAGGAGGGGAAGCTGGTGCCCGCCCACCTCATCGACTGCTACCGCGAGCTCTTTCTCCAGCCGC
CGCCCGAGGTGGCTCTGGCGGAGCAGGCGGCCTACGTGGCCAAGAACTTGATCCAGCTCACCGAG
GGCGCGCTGGCGCTGGACTTGGCGTCGCTCGAGAAGCTCTTGGGG
Found at i:43179 original size:9 final size:9
Alignment explanation
Indices: 43162--43203 Score: 75
Period size: 9 Copynumber: 4.7 Consensus size: 9
43152 GAGTTATCGT
*
43162 TGTCATTGC
1 TGTCGTTGC
43171 TGTCGTTGC
1 TGTCGTTGC
43180 TGTCGTTGC
1 TGTCGTTGC
43189 TGTCGTTGC
1 TGTCGTTGC
43198 TGTCGT
1 TGTCGT
43204 CGTTGTCGTC
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
9 32 1.00
ACGTcount: A:0.02, C:0.21, G:0.31, T:0.45
Consensus pattern (9 bp):
TGTCGTTGC
Left flanking sequence: Indices 42662 -- 43161
ATGTGCGGCTGAACAGAGAAGCCATGCTAAAGACGCAGCCAGATCTCCAGAGGGACCCAAGACAA
TCAAACTCAGTTGTTTCGTTGATCAACGCTTGATAGTTTGCCTTTAATTACACTAGTTATATTTC
AACAATAGCTGCTCTCCAACTTTTCTTGGCTTTGGTTGCCTTTAAGGTTTCACAAAACCGAAGTG
TGACCTATTGTTCCGGCAAATGCAGGGGTTTAGCCGGATTAGTTATTCCAAGTCCGTGAGCTAAG
CCTTCCATGTCACAGCAGATCGCATGGGATTTGCAGCCACTAAATCTGGGACAAAAGCTAGGTAC
TACCAGAAAAGCTAACCAATTGGAATTTTGTCGCTGGCCCTACTCACCTGAACTTTACAATCATC
ATAAATTCAATATGTCAAGGATTACAACAAATAGAGTCCAGCTCCAATAGCGGCGGCACCGTACA
CTAGCCCGGCGACCGAGTTGACGCCAGCACCGTTAGAGTTATCGT
Right flanking sequence: Indices 43204 -- 43703
CGTTGTCGTCGTTGTCGTCGTTGTCGTCGTTATCATTTCCATCATCACCCTCATTATCCTCAGTT
TCTTCCCTGTCCACAGGGTTTGTGGCCTCCACCTGGTCCTCGAGTCCCAACGCAGAAGCGAACGA
GGGGTCCAAACTAGTTGCAGTAATCGAGTCAAAGGGCACGCTACCGGAGAAGTAGCTGTACATCT
GACTATAGTACAGCATCATCGCACCTGTGTAAGCAGTGTCCAGCCCGGAAACCATGCCGACAAAT
TGCTCGAGATTCTCGGGGTCAATGGTGATATAGGTGGTACCGTCCTCGACCTTGATGGGATCAGC
ACAGAAAACAACGGGTAAGAGTAGCAAGTAGGAAAGCATGGTGGAGTGGAGGAAGAGGAACCACG
GCCTTATATAGCTCTCGCCAGCTCAATCAGGGAGGCGAGTTACGTCATGAGACAGTCGCTTGGAG
CATTTGGTACAGATTGGAAGAACGGGTTTTGTGGGGTTGAGACGA
Found at i:43210 original size:9 final size:9
Alignment explanation
Indices: 43198--43234 Score: 74
Period size: 9 Copynumber: 4.1 Consensus size: 9
43188 CTGTCGTTGC
43198 TGTCGTCGT
1 TGTCGTCGT
43207 TGTCGTCGT
1 TGTCGTCGT
43216 TGTCGTCGT
1 TGTCGTCGT
43225 TGTCGTCGT
1 TGTCGTCGT
43234 T
1 T
43235 ATCATTTCCA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 28 1.00
ACGTcount: A:0.00, C:0.22, G:0.32, T:0.46
Consensus pattern (9 bp):
TGTCGTCGT
Left flanking sequence: Indices 42698 -- 43197
AGCCAGATCTCCAGAGGGACCCAAGACAATCAAACTCAGTTGTTTCGTTGATCAACGCTTGATAG
TTTGCCTTTAATTACACTAGTTATATTTCAACAATAGCTGCTCTCCAACTTTTCTTGGCTTTGGT
TGCCTTTAAGGTTTCACAAAACCGAAGTGTGACCTATTGTTCCGGCAAATGCAGGGGTTTAGCCG
GATTAGTTATTCCAAGTCCGTGAGCTAAGCCTTCCATGTCACAGCAGATCGCATGGGATTTGCAG
CCACTAAATCTGGGACAAAAGCTAGGTACTACCAGAAAAGCTAACCAATTGGAATTTTGTCGCTG
GCCCTACTCACCTGAACTTTACAATCATCATAAATTCAATATGTCAAGGATTACAACAAATAGAG
TCCAGCTCCAATAGCGGCGGCACCGTACACTAGCCCGGCGACCGAGTTGACGCCAGCACCGTTAG
AGTTATCGTTGTCATTGCTGTCGTTGCTGTCGTTGCTGTCGTTGC
Right flanking sequence: Indices 43235 -- 43734
ATCATTTCCATCATCACCCTCATTATCCTCAGTTTCTTCCCTGTCCACAGGGTTTGTGGCCTCCA
CCTGGTCCTCGAGTCCCAACGCAGAAGCGAACGAGGGGTCCAAACTAGTTGCAGTAATCGAGTCA
AAGGGCACGCTACCGGAGAAGTAGCTGTACATCTGACTATAGTACAGCATCATCGCACCTGTGTA
AGCAGTGTCCAGCCCGGAAACCATGCCGACAAATTGCTCGAGATTCTCGGGGTCAATGGTGATAT
AGGTGGTACCGTCCTCGACCTTGATGGGATCAGCACAGAAAACAACGGGTAAGAGTAGCAAGTAG
GAAAGCATGGTGGAGTGGAGGAAGAGGAACCACGGCCTTATATAGCTCTCGCCAGCTCAATCAGG
GAGGCGAGTTACGTCATGAGACAGTCGCTTGGAGCATTTGGTACAGATTGGAAGAACGGGTTTTG
TGGGGTTGAGACGAAGGTTGCACGAACTGCCGACGCAAAAGGCAA
Found at i:43210 original size:18 final size:18
Alignment explanation
Indices: 43171--43230 Score: 84
Period size: 18 Copynumber: 3.3 Consensus size: 18
43161 TTGTCATTGC
* *
43171 TGTCGTTGCTGTCGTTGC
1 TGTCGTTGCTGTCGTCGT
43189 TGTCGTTGCTGTCGTCGT
1 TGTCGTTGCTGTCGTCGT
* *
43207 TGTCGTCGTTGTCGTCGT
1 TGTCGTTGCTGTCGTCGT
43225 TGTCGT
1 TGTCGT
43231 CGTTATCATT
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 38 1.00
ACGTcount: A:0.00, C:0.22, G:0.33, T:0.45
Consensus pattern (18 bp):
TGTCGTTGCTGTCGTCGT
Left flanking sequence: Indices 42671 -- 43170
TGAACAGAGAAGCCATGCTAAAGACGCAGCCAGATCTCCAGAGGGACCCAAGACAATCAAACTCA
GTTGTTTCGTTGATCAACGCTTGATAGTTTGCCTTTAATTACACTAGTTATATTTCAACAATAGC
TGCTCTCCAACTTTTCTTGGCTTTGGTTGCCTTTAAGGTTTCACAAAACCGAAGTGTGACCTATT
GTTCCGGCAAATGCAGGGGTTTAGCCGGATTAGTTATTCCAAGTCCGTGAGCTAAGCCTTCCATG
TCACAGCAGATCGCATGGGATTTGCAGCCACTAAATCTGGGACAAAAGCTAGGTACTACCAGAAA
AGCTAACCAATTGGAATTTTGTCGCTGGCCCTACTCACCTGAACTTTACAATCATCATAAATTCA
ATATGTCAAGGATTACAACAAATAGAGTCCAGCTCCAATAGCGGCGGCACCGTACACTAGCCCGG
CGACCGAGTTGACGCCAGCACCGTTAGAGTTATCGTTGTCATTGC
Right flanking sequence: Indices 43231 -- 43730
CGTTATCATTTCCATCATCACCCTCATTATCCTCAGTTTCTTCCCTGTCCACAGGGTTTGTGGCC
TCCACCTGGTCCTCGAGTCCCAACGCAGAAGCGAACGAGGGGTCCAAACTAGTTGCAGTAATCGA
GTCAAAGGGCACGCTACCGGAGAAGTAGCTGTACATCTGACTATAGTACAGCATCATCGCACCTG
TGTAAGCAGTGTCCAGCCCGGAAACCATGCCGACAAATTGCTCGAGATTCTCGGGGTCAATGGTG
ATATAGGTGGTACCGTCCTCGACCTTGATGGGATCAGCACAGAAAACAACGGGTAAGAGTAGCAA
GTAGGAAAGCATGGTGGAGTGGAGGAAGAGGAACCACGGCCTTATATAGCTCTCGCCAGCTCAAT
CAGGGAGGCGAGTTACGTCATGAGACAGTCGCTTGGAGCATTTGGTACAGATTGGAAGAACGGGT
TTTGTGGGGTTGAGACGAAGGTTGCACGAACTGCCGACGCAAAAG
Found at i:43219 original size:27 final size:27
Alignment explanation
Indices: 43158--43234 Score: 91
Period size: 27 Copynumber: 2.9 Consensus size: 27
43148 GTTAGAGTTA
* * *
43158 TCGTTGTCATTGCTGTCGTTGCTGTCG
1 TCGTTGTCGTTGCTGTCGTCGTTGTCG
* *
43185 TTGCTGTCGTTGCTGTCGTCGTTGTCG
1 TCGTTGTCGTTGCTGTCGTCGTTGTCG
* *
43212 TCGTTGTCGTCGTTGTCGTCGTT
1 TCGTTGTCGTTGCTGTCGTCGTT
43235 ATCATTTCCA
Statistics
Matches: 41, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 41 1.00
ACGTcount: A:0.01, C:0.22, G:0.31, T:0.45
Consensus pattern (27 bp):
TCGTTGTCGTTGCTGTCGTCGTTGTCG
Left flanking sequence: Indices 42658 -- 43157
TATAATGTGCGGCTGAACAGAGAAGCCATGCTAAAGACGCAGCCAGATCTCCAGAGGGACCCAAG
ACAATCAAACTCAGTTGTTTCGTTGATCAACGCTTGATAGTTTGCCTTTAATTACACTAGTTATA
TTTCAACAATAGCTGCTCTCCAACTTTTCTTGGCTTTGGTTGCCTTTAAGGTTTCACAAAACCGA
AGTGTGACCTATTGTTCCGGCAAATGCAGGGGTTTAGCCGGATTAGTTATTCCAAGTCCGTGAGC
TAAGCCTTCCATGTCACAGCAGATCGCATGGGATTTGCAGCCACTAAATCTGGGACAAAAGCTAG
GTACTACCAGAAAAGCTAACCAATTGGAATTTTGTCGCTGGCCCTACTCACCTGAACTTTACAAT
CATCATAAATTCAATATGTCAAGGATTACAACAAATAGAGTCCAGCTCCAATAGCGGCGGCACCG
TACACTAGCCCGGCGACCGAGTTGACGCCAGCACCGTTAGAGTTA
Right flanking sequence: Indices 43235 -- 43734
ATCATTTCCATCATCACCCTCATTATCCTCAGTTTCTTCCCTGTCCACAGGGTTTGTGGCCTCCA
CCTGGTCCTCGAGTCCCAACGCAGAAGCGAACGAGGGGTCCAAACTAGTTGCAGTAATCGAGTCA
AAGGGCACGCTACCGGAGAAGTAGCTGTACATCTGACTATAGTACAGCATCATCGCACCTGTGTA
AGCAGTGTCCAGCCCGGAAACCATGCCGACAAATTGCTCGAGATTCTCGGGGTCAATGGTGATAT
AGGTGGTACCGTCCTCGACCTTGATGGGATCAGCACAGAAAACAACGGGTAAGAGTAGCAAGTAG
GAAAGCATGGTGGAGTGGAGGAAGAGGAACCACGGCCTTATATAGCTCTCGCCAGCTCAATCAGG
GAGGCGAGTTACGTCATGAGACAGTCGCTTGGAGCATTTGGTACAGATTGGAAGAACGGGTTTTG
TGGGGTTGAGACGAAGGTTGCACGAACTGCCGACGCAAAAGGCAA
Found at i:46256 original size:30 final size:32
Alignment explanation
Indices: 46220--46294 Score: 82
Period size: 33 Copynumber: 2.4 Consensus size: 32
46210 TCCGGGTCCT
*
46220 CCGCCTGAGTTTGAC-G-CTCCGCTGGGACCG
1 CCGCCTGAGTTCGACGGCCTCCGCTGGGACCG
* *
46250 CCGCCTGACTTCGACGGGCCTCCGCTGGGCCCG
1 CCGCCTGAGTTCGAC-GGCCTCCGCTGGGACCG
* *
46283 CCCCCGGAGTTC
1 CCGCCTGAGTTC
46295 AGTGCTCCTC
Statistics
Matches: 36, Mismatches: 6, Indels: 3
0.80 0.13 0.07
Matches are distributed among these distances:
30 13 0.36
32 1 0.03
33 22 0.61
ACGTcount: A:0.08, C:0.43, G:0.32, T:0.17
Consensus pattern (32 bp):
CCGCCTGAGTTCGACGGCCTCCGCTGGGACCG
Left flanking sequence: Indices 45720 -- 46219
TTGACGAGGCGTTTGTGCCCAAGGGCTACCAGCAGGTGTTTTCGGAGACCCAGATCCAGTACCGC
CTGGTGGTGGGCAAGGAGTACGGGGTGTGCAAGTGCAACTTCTGTGTGGCTGAGCGCCACGGGAT
GCTCGACTCGCTCGAGGGGGCCATGGAGAACATGTCGATGAACCCGAAGGGCCACCCGGAGAAGG
GCGGGCACCACGGGCAGGCAGGCCACCAGGGAGGCTACGAGAAGAGCGGCCAGGCCCCTGGGTAC
GAGAAGAGCGGCCACCAGGCCCCGGGCTACCACCAGGGCGGGTTTGACTCGACGCTCTCGGAGAA
GGAGCGCATGAAACGCCACTACGAGCAACAGCAGGGCGACTTCAAGCCTCCTGGAGGCGCGCCTC
CGGGCCACCTGGATGCCCCACCGCCCTCAGGCCCGCCTCCCGAGTTCAGTGCGCCGTCGGGCCCA
CCGCCCGACATGGACTCTAAGGGTGGAGCTCCGCCTCCGGGTCCT
Right flanking sequence: Indices 46295 -- 46794
AGTGCTCCTCCGGGCCCGCCTCCGGAGAAGGACTTTGCTCCGCCTCCCGGGCCGCCTCCCGGGAC
CGAGTCGTCGTCGTCGTTTGCCCCGCCTCCAGGCCCGCCTCCAGGGGTGAGCTCTGTGCGAGGGG
CTCCTGCGCTTCCGCCTGGGTACGCCAACGTCGGTGGCCAGCTGGGCGGGTGGCTCCAGCTCTCG
CTGTCGTACCCACACAAGTGCGACGTGTCGCTGCCCAACCGGTGCGAGTGTAGAGGTACTACGGG
CTGCGGTGGTGGTGCTCCGTCGTGTAGAGCTGGTAAGTTGACTCTTGGCGAGGAGAAGCTCAGCT
GGTTCCACCGGATGAGACGATAAATAGAAAATGAAACGAGAGAACGATTAGAGAGGGGAAACTGA
GAAACGGTCTTTGAATTTTTTTTTGCTCTGTGAAGGGCAACTGAAGGTAGCCCAAATGGTAATTA
TCGTTGACTTCTAAATCTCGCTCGAGTGTCTTCCACACCGAATGC
Found at i:46955 original size:22 final size:22
Alignment explanation
Indices: 46930--46991 Score: 124
Period size: 22 Copynumber: 2.8 Consensus size: 22
46920 TGATCTATAG
46930 CAATCTCCTGTGTGACCTGTAA
1 CAATCTCCTGTGTGACCTGTAA
46952 CAATCTCCTGTGTGACCTGTAA
1 CAATCTCCTGTGTGACCTGTAA
46974 CAATCTCCTGTGTGACCT
1 CAATCTCCTGTGTGACCT
46992 ATACTCCCAC
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 40 1.00
ACGTcount: A:0.21, C:0.29, G:0.18, T:0.32
Consensus pattern (22 bp):
CAATCTCCTGTGTGACCTGTAA
Left flanking sequence: Indices 46430 -- 46929
GCGCTTCCGCCTGGGTACGCCAACGTCGGTGGCCAGCTGGGCGGGTGGCTCCAGCTCTCGCTGTC
GTACCCACACAAGTGCGACGTGTCGCTGCCCAACCGGTGCGAGTGTAGAGGTACTACGGGCTGCG
GTGGTGGTGCTCCGTCGTGTAGAGCTGGTAAGTTGACTCTTGGCGAGGAGAAGCTCAGCTGGTTC
CACCGGATGAGACGATAAATAGAAAATGAAACGAGAGAACGATTAGAGAGGGGAAACTGAGAAAC
GGTCTTTGAATTTTTTTTTGCTCTGTGAAGGGCAACTGAAGGTAGCCCAAATGGTAATTATCGTT
GACTTCTAAATCTCGCTCGAGTGTCTTCCACACCGAATGCTTGAACAAGCCTGCAAATTTAACTC
TTAGTGACTAACCTACCATATATCTGGAGAATGACCAGATCGTAAACAGAGTTGATTTAGAACAT
GCCTGAATTATGCACAATGTCACTCGTGCATTTGGTGATCTATAG
Right flanking sequence: Indices 46992 -- 47491
ATACTCCCACCACACCATACTTTATGCATTTATTGAACAATCGATGTTTTACGTAGTCGTCTACT
CTATGCTACCGGTCGCCAGCGACTCATGTAAACTGCTCTCCGCCCGAGAACAACTGCACAATACA
CTGGTAGAACGGCTCCCGGTGCACCACCTGGTCGAAATTGAACTCAGCGACGCGGTTGGGGAATG
CCCGTTTCAACCAGTACACCAACCGGTCGCGCTCAAGGGTAAACTTGCCCGGGAACTCCTTGTAG
CAGGCAGCCCGCTCCTTGTACTTGGAGATGAAGCTCAACACCAGCTGGCCCGACCGCGGCTTGGT
CCCGAGCCACACTTGCATGTGGTGCAAGTCCTCGTCGTAGAAGTGCTTGTACCGGAACAAGTACT
CGATGAACTCGGGCCACAGCGGCAGCAGCTCGAGCCCCTGGCGCATCACGTCGCCAAGGTAGCCG
GTTCCGTAGAAGCCCCAGTAGTGGAACGGAACCTGGGCTGCCATG
Found at i:48249 original size:10 final size:10
Alignment explanation
Indices: 48236--48351 Score: 94
Period size: 10 Copynumber: 11.6 Consensus size: 10
48226 AAGGTGACAC
48236 GAGGTAACCG
1 GAGGTAACCG
**
48246 GAGGTAATGG
1 GAGGTAACCG
48256 GAGG-ATACCG
1 GAGGTA-ACCG
**
48266 GAGGTAATGG
1 GAGGTAACCG
48276 GAGGCT-ACCG
1 GAGG-TAACCG
**
48286 GAGGTAATGG
1 GAGGTAACCG
48296 GAGG-ATACCG
1 GAGGTA-ACCG
**
48306 GAGGTAATGG
1 GAGGTAACCG
48316 GAGGTAACCG
1 GAGGTAACCG
**
48326 GAGGTAATGG
1 GAGGTAACCG
48336 GAGGTAACCG
1 GAGGTAACCG
48346 GAGGTA
1 GAGGTA
48352 TTGGGAGGAT
Statistics
Matches: 80, Mismatches: 20, Indels: 12
0.71 0.18 0.11
Matches are distributed among these distances:
9 3 0.04
10 74 0.93
11 3 0.04
ACGTcount: A:0.29, C:0.11, G:0.45, T:0.15
Consensus pattern (10 bp):
GAGGTAACCG
Left flanking sequence: Indices 47736 -- 48235
CGCTGATGTCCTGTTTTAGCAACCGGATCACGTCCTGGGAGTCCGCTGAGTGCGGTCCTCCGCTG
CTGGAGAGCGAGCTGCCCCCGTTAAGCACGCTCATCCGGAGCTGGGGGGTCAGTTGGAGCAGCAA
ATGGGTGCTGTGGTGGCTGCGAGCGAGGGTGGTGGTGGTGCCATTGGCGGGGGTGTTGGCGACGG
CGCGCTTTAGAAGCACGATCTCGTCTTGTTGAGCACAGAGGAGCTGTTCAAGGGCCTCTACACGC
TTGGCAAGCAGGGCAGACAGCTCCAGAGGAGGGGAGTGGGTTGCGGTGGGCAACTGGTCGATGGC
TGGGAGTGGTAACAGACCCTGGCCCAGACGGGATTGGTCGGGAATGAGCGTGGCCTTCATGGCAC
GCTCGGACTGGGTGATGGTGGCCACGGTGGGTGGGGTGTCCTTGGAAGTGCCAAAAAGGGTCCCT
GTGGTGTTCTAGGAGGGTTACCTGAGGGAGTGGTCAAGGTGACAC
Right flanking sequence: Indices 48352 -- 48851
TTGGGAGGATACCGGAGAAACTGGAAGATACGTGGATCACCAGAGGAACAACCGGAGAAAACGGT
TCGGATGGAAAGTGACCCGAGATCAGACAAGCAAGGATCCTGGCACAAAGAGTGAGGTGACCGGA
GAACTCCTATAAACCAGATCTGTCGGGAACAGCGGTGACGATCCTGAGGTGAGGTGACTTCGGGA
GCACAAAGCTACTCGGTTGGCGGGTCCGTGGAGGGGTGGAATCAATAGCGAACACTGAGATGGGA
CTTTTCACAAGAGCCTCAGCAAAACGCGTAGGAAAACCGATCTGGCGTGGAATCTGAGTCGTCTG
AACACAAGGGCCTGATCGGGTGATCGGAAAGGACAAGCACCACGGTCACGGGGGGAGGTGGAATC
GACGCGAGAACCTAGCACGTAAAACGAGCAATAAGAAAACCTCTACGGTGCGCACGACTGCCTCG
GCGTTCATGCACTCTAGATGGGGTGTAGCCACGTCCACGCGGTAG
Found at i:48259 original size:20 final size:20
Alignment explanation
Indices: 48236--48368 Score: 193
Period size: 20 Copynumber: 6.7 Consensus size: 20
48226 AAGGTGACAC
48236 GAGGTAACCGGAGGTAATGG
1 GAGGTAACCGGAGGTAATGG
48256 GAGG-ATACCGGAGGTAATGG
1 GAGGTA-ACCGGAGGTAATGG
48276 GAGGCT-ACCGGAGGTAATGG
1 GAGG-TAACCGGAGGTAATGG
48296 GAGG-ATACCGGAGGTAATGG
1 GAGGTA-ACCGGAGGTAATGG
48316 GAGGTAACCGGAGGTAATGG
1 GAGGTAACCGGAGGTAATGG
*
48336 GAGGTAACCGGAGGTATTGG
1 GAGGTAACCGGAGGTAATGG
48356 GAGG-ATACCGGAG
1 GAGGTA-ACCGGAG
48369 AAACTGGAAG
Statistics
Matches: 105, Mismatches: 1, Indels: 14
0.88 0.01 0.12
Matches are distributed among these distances:
19 2 0.02
20 102 0.97
21 1 0.01
ACGTcount: A:0.29, C:0.11, G:0.45, T:0.15
Consensus pattern (20 bp):
GAGGTAACCGGAGGTAATGG
Left flanking sequence: Indices 47736 -- 48235
CGCTGATGTCCTGTTTTAGCAACCGGATCACGTCCTGGGAGTCCGCTGAGTGCGGTCCTCCGCTG
CTGGAGAGCGAGCTGCCCCCGTTAAGCACGCTCATCCGGAGCTGGGGGGTCAGTTGGAGCAGCAA
ATGGGTGCTGTGGTGGCTGCGAGCGAGGGTGGTGGTGGTGCCATTGGCGGGGGTGTTGGCGACGG
CGCGCTTTAGAAGCACGATCTCGTCTTGTTGAGCACAGAGGAGCTGTTCAAGGGCCTCTACACGC
TTGGCAAGCAGGGCAGACAGCTCCAGAGGAGGGGAGTGGGTTGCGGTGGGCAACTGGTCGATGGC
TGGGAGTGGTAACAGACCCTGGCCCAGACGGGATTGGTCGGGAATGAGCGTGGCCTTCATGGCAC
GCTCGGACTGGGTGATGGTGGCCACGGTGGGTGGGGTGTCCTTGGAAGTGCCAAAAAGGGTCCCT
GTGGTGTTCTAGGAGGGTTACCTGAGGGAGTGGTCAAGGTGACAC
Right flanking sequence: Indices 48369 -- 48868
AAACTGGAAGATACGTGGATCACCAGAGGAACAACCGGAGAAAACGGTTCGGATGGAAAGTGACC
CGAGATCAGACAAGCAAGGATCCTGGCACAAAGAGTGAGGTGACCGGAGAACTCCTATAAACCAG
ATCTGTCGGGAACAGCGGTGACGATCCTGAGGTGAGGTGACTTCGGGAGCACAAAGCTACTCGGT
TGGCGGGTCCGTGGAGGGGTGGAATCAATAGCGAACACTGAGATGGGACTTTTCACAAGAGCCTC
AGCAAAACGCGTAGGAAAACCGATCTGGCGTGGAATCTGAGTCGTCTGAACACAAGGGCCTGATC
GGGTGATCGGAAAGGACAAGCACCACGGTCACGGGGGGAGGTGGAATCGACGCGAGAACCTAGCA
CGTAAAACGAGCAATAAGAAAACCTCTACGGTGCGCACGACTGCCTCGGCGTTCATGCACTCTAG
ATGGGGTGTAGCCACGTCCACGCGGTAGCTTAGCGACTGATTATT
Found at i:48310 original size:60 final size:60
Alignment explanation
Indices: 48242--48368 Score: 213
Period size: 60 Copynumber: 2.1 Consensus size: 60
48232 ACACGAGGTA
48242 ACCGGAGGTAATGGGAGG-ATACCGGAGGTAATGGGAGGCT-ACCGGAGGTAATGGGAGGAT
1 ACCGGAGGTAATGGGAGGTA-ACCGGAGGTAATGGGAGG-TAACCGGAGGTAATGGGAGGAT
*
48302 ACCGGAGGTAATGGGAGGTAACCGGAGGTAATGGGAGGTAACCGGAGGTATTGGGAGGAT
1 ACCGGAGGTAATGGGAGGTAACCGGAGGTAATGGGAGGTAACCGGAGGTAATGGGAGGAT
48362 ACCGGAG
1 ACCGGAG
48369 AAACTGGAAG
Statistics
Matches: 64, Mismatches: 1, Indels: 4
0.93 0.01 0.06
Matches are distributed among these distances:
59 1 0.02
60 62 0.97
61 1 0.02
ACGTcount: A:0.28, C:0.12, G:0.45, T:0.15
Consensus pattern (60 bp):
ACCGGAGGTAATGGGAGGTAACCGGAGGTAATGGGAGGTAACCGGAGGTAATGGGAGGAT
Left flanking sequence: Indices 47742 -- 48241
TGTCCTGTTTTAGCAACCGGATCACGTCCTGGGAGTCCGCTGAGTGCGGTCCTCCGCTGCTGGAG
AGCGAGCTGCCCCCGTTAAGCACGCTCATCCGGAGCTGGGGGGTCAGTTGGAGCAGCAAATGGGT
GCTGTGGTGGCTGCGAGCGAGGGTGGTGGTGGTGCCATTGGCGGGGGTGTTGGCGACGGCGCGCT
TTAGAAGCACGATCTCGTCTTGTTGAGCACAGAGGAGCTGTTCAAGGGCCTCTACACGCTTGGCA
AGCAGGGCAGACAGCTCCAGAGGAGGGGAGTGGGTTGCGGTGGGCAACTGGTCGATGGCTGGGAG
TGGTAACAGACCCTGGCCCAGACGGGATTGGTCGGGAATGAGCGTGGCCTTCATGGCACGCTCGG
ACTGGGTGATGGTGGCCACGGTGGGTGGGGTGTCCTTGGAAGTGCCAAAAAGGGTCCCTGTGGTG
TTCTAGGAGGGTTACCTGAGGGAGTGGTCAAGGTGACACGAGGTA
Right flanking sequence: Indices 48369 -- 48868
AAACTGGAAGATACGTGGATCACCAGAGGAACAACCGGAGAAAACGGTTCGGATGGAAAGTGACC
CGAGATCAGACAAGCAAGGATCCTGGCACAAAGAGTGAGGTGACCGGAGAACTCCTATAAACCAG
ATCTGTCGGGAACAGCGGTGACGATCCTGAGGTGAGGTGACTTCGGGAGCACAAAGCTACTCGGT
TGGCGGGTCCGTGGAGGGGTGGAATCAATAGCGAACACTGAGATGGGACTTTTCACAAGAGCCTC
AGCAAAACGCGTAGGAAAACCGATCTGGCGTGGAATCTGAGTCGTCTGAACACAAGGGCCTGATC
GGGTGATCGGAAAGGACAAGCACCACGGTCACGGGGGGAGGTGGAATCGACGCGAGAACCTAGCA
CGTAAAACGAGCAATAAGAAAACCTCTACGGTGCGCACGACTGCCTCGGCGTTCATGCACTCTAG
ATGGGGTGTAGCCACGTCCACGCGGTAGCTTAGCGACTGATTATT
Found at i:51673 original size:12 final size:12
Alignment explanation
Indices: 51658--51682 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
51648 TTAAGTAGTG
51658 ACCCTGAGTATT
1 ACCCTGAGTATT
51670 ACCCTGAGTATT
1 ACCCTGAGTATT
51682 A
1 A
51683 GTTACACCAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.28, C:0.24, G:0.16, T:0.32
Consensus pattern (12 bp):
ACCCTGAGTATT
Left flanking sequence: Indices 51158 -- 51657
AGATCGAACAATTAGGATCGTATGAAACCGTAGGGCAAAAAATGCTCTCCGAATTCTTGAGCACG
GTTCAAGTATACGTATGATCCTCGCAGATTATTTCGTATCTTGCTGTGCGAAACTTCTGCATACC
CACGAACTCGCGCTGGTTTGGAACCCTTGAAAAGGCGCAAGTCCTCCGCAATATACGCATTAATG
TACAGAAACAATACAGGCTGTGTGGGATAGCAGTAACCATCGGTCCATAGTGATCCAATTGATTG
GTTTAGCCAATTCAATAAGTGTAAGACTAACAATTCCATATTATGCATGCTGTTCAAGACTCGGG
AACCATTCTCCGAATGAAATACGCCGGTGACTTTAGATTAAAACTGCTGATGATTTCTCAAAGAG
GCATTTGACGTGACCTGAAACGAAAAACATTCTATTTTCGCAGCCGACACGAGTATAGATTAAGG
TTCTACGATGTTGGATTATGTCATTGAGTAGTATCTTAAGTAGTG
Right flanking sequence: Indices 51683 -- 52182
GTTACACCACTTCAGCGTCTACGATTTAAATGGTCTTTACTTGAAGACCAACGCTTTTGAAGCAT
TCCGCGTTCCTTCTATTTTTTTTTGCCTGGGTGGAGTATATTTTTGGAGTTCGTCCCTGGAAAAT
AATCATTTAGTCCGAACATCGCACCCTCCGAAATGCACCCCTGAGATCCCAAGGCTTAGCATGGT
GGGGAACCATGTACTACTGAATTATTGCAACTACTTGCTTTTGCTTTCCACGTCACACTAGTAGA
TTTTCAGTCTCAGCCTCTCTGGTTTGCAGCCCTGGTGTGACATCAGACTACAGCGTATGAATAAC
GTGGGCACTTCACACGTTACAAGAGACGTAGGTGGCTGGTTTAGTACGTCTACACATGCATAGTA
AACCTTGAGTTTCTTCGGTACTTCCCATAAACCTCAGTTCAGCGATATCTAATTCCCCAGCCAAG
TCCGCTCGCACGTCAAGATGCGACGTAACCACCGGATTAAATTTA
Found at i:75032 original size:24 final size:23
Alignment explanation
Indices: 74988--75033 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 23
74978 TCCTTTTTCG
*
74988 TCAAAGTGGGGTAGAGCTTTGGT
1 TCAAAGTGGGGTAGAGATTTGGT
75011 TCAAAGGTGGGG-AGAAGATTTGG
1 TCAAA-GTGGGGTAG-AGATTTGG
75034 GGGTTGCAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
23 7 0.35
24 13 0.65
ACGTcount: A:0.26, C:0.07, G:0.41, T:0.26
Consensus pattern (23 bp):
TCAAAGTGGGGTAGAGATTTGGT
Left flanking sequence: Indices 74488 -- 74987
GTTTTTGCGATTTACCGAAAGCTCCTACACTCCGGAGACTCCGTAGTTAGTCATTTCCAACACAA
ACCTTCCTTTGTGGCCTACCCCAGGATGGTCTGATAATACGTCATACACTTGAAGCTTAAGTGCC
ACACGGCTCGAAACAGAAATAATACACGGAGAATGAGCCACGGGGTAGCACCTACCGCCGAGACG
CGTAATTTCACGGGGTCACCCTACTTTTGCCGGTGTGGGGGTCACCCGGAGCAGCCACACGTGGA
TTCTGATTGTCAACCCCACCTTCTGCATCAGTTGTTATTGTGACGTTGGGTCGAGCTCGAAAATG
GGGTTGCAGTAGCCACAAGAACGAGTATCTAGTCAGCAGACTAAGGCTTGCCATCTTGAATCCCC
CAGCCGGATTAACTCTTAACGGTGCCAAGGTCTTGGCGTTCGTAATCGGATGCCGGCCCGGTCGC
GGCGACGCCGTTCACTCGAAACCCAAGGGTTGATTTCCTTTTTCG
Right flanking sequence: Indices 75034 -- 75533
GGGTTGCAAAACGAAACACTTTCGGGTATAAAAGAATCGGGTCATTTCGGTAAAATCGTAAATCC
ACATCGACACTATGGTTAAGGGAATCTCAACCTTTTTGGCTCGGTTCCATTTGGGACCCGATCAC
TCTCCACCCCAGATCTATAACTGGACTCTTTACATGTGTATGTTCGTGTTCGGTATTTTGGGCAG
TGCCAGAGGGTATGATGAAGGCAATGTTGCGGGCAGCATTGCTCAGAAGTCTTTCAAGGACCGGT
TCATCAACACTGAGGACGAACAGTCTAATATCACGTCGATGGTGCAGCTCGGTTCCATCCCCGGA
GCTATGCTTGCCATGTTCACTGTTGACTATTTTGGCCGGGTTCGTTGTTTGCAAATCATTTGCGT
GATTTGGATTGTGGGTACCGTGATTCAGCTTACGTCCAAGGACATCGGGCAGTTGTACGCTGGTC
GGATTATTGAAGGTCTTGCTATCGGTCATACCACCACAATTGGTC
Found at i:84678 original size:42 final size:42
Alignment explanation
Indices: 84612--84706 Score: 127
Period size: 42 Copynumber: 2.2 Consensus size: 42
84602 TAGTGAAGAC
* * *
84612 TTGAGCGAAACAACGTCATCGATCGTCACACAGTCAACTGATA
1 TTGAG-GAAACAACATCAGCGATCGTCACACAGTCAACGGATA
* * *
84655 TTGAGGAATCAACATCAGCGATCGTCACACAGTCATCGGATG
1 TTGAGGAAACAACATCAGCGATCGTCACACAGTCAACGGATA
84697 TTGAGGAAAC
1 TTGAGGAAAC
84707 TACTTCAGAG
Statistics
Matches: 45, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
42 40 0.89
43 5 0.11
ACGTcount: A:0.34, C:0.23, G:0.22, T:0.21
Consensus pattern (42 bp):
TTGAGGAAACAACATCAGCGATCGTCACACAGTCAACGGATA
Left flanking sequence: Indices 84112 -- 84611
TATCCGAAATTTCAACCTCACGATCGTCTGAAAACACTGAAACCCCTTCTTCTAGTGAGTCGGAT
AGTTTGAGCAATTCTAGTGAGCTGGGTTTAACTGAGCTGGCTAGTGAGCTTGGTTCTACAGAAAC
GTCCTCAGCTTTAGATGAAACTTCCTCCGCTAGTACAGACCTCGAGCTGGAGTCAGAGGACTACT
ACAGCACGGCAAGCTTTACTCTGGAATCCCAGTCGTTGGTAGATGAGGAGTCTACAACAGGACAG
GACTCTAGCAAGGAAGTCAGTTCAGTAACCATTTCCCCGTCATCTAGTATTGAGGAGTCAACTTC
GGCTTTGACTACGAGCGTGGAAGAACTGTCTTGGGTCAGTGAATCAACGGAAGACCAAGATTGGC
ACACAGAAACAAGCTCGACTACTGACTCCCTGTCCTCTAATACTTCGGAACTGACCATGACGGAG
GAGGAGTTGTCTTCTGCCTTGAGCGTGTCTTCAAGTAGTGAAGAC
Right flanking sequence: Indices 84707 -- 85206
TACTTCAGAGCTGGTTACAAGTAATGAAGATCTGTCGTCCGTGACTAGTGCGTCTACACTGGGGC
AAAATTCGAGTTCCGATAGTATTTCTTCTACGATTACTCTGTCTTCCCATGCTGAGGGTTCGACG
ACACAACCAACTACGAACCAGGGAGAGCTGCTGTCTTCTACCCCGATTGCTCCTACTTCTTCATC
TCTGGGGTACACGACCCCATGGCAAGTTTCAAGTGATCTGTCGGCCACTACGATCGGAACAGGAC
AATTGAGCTCTTCTTCTGAATTTGAAGAGTCACCCCTGGAACAATCATTATGGGGCACTAATTCT
CTTGAGACCGAAGATTGGACGCTGATTGAAGAATCATCCGAGAGCTCTATTGCTGAAGAGTCGAC
TATGGATTCGGTTGATAGTGTGAGTTTCTCAACTCTTGATAAGAGTTCTTCTCTGGTCCCAGGCT
CGACTTTGAACTCGTTCTCGAGTAACGAGATTCCTACGGCTTCCT
Found at i:85491 original size:78 final size:78
Alignment explanation
Indices: 85362--85638 Score: 428
Period size: 78 Copynumber: 3.6 Consensus size: 78
85352 AGAAGGCACA
* * **
85362 TCAAGTATTGGGGAATTCAGCTCGACACTGTCTGAGGAGCAAGAAAGTGCATCGGATGCCCTGCT
1 TCAAGTATTGGAGAATTCAGCTCGACGCTGTCTGAGGAGCAAGTGAGTGCATCGGATGCCCTGCT
** *
85427 AAACGCCACTTCG
66 GGACGCCACTTCT
* * *
85440 TCAAGTATTGGAGAGTTCAGTTTGACGCTGTCTGAGGAGCAAGTGAGTGCATCGGATGCCCTGCT
1 TCAAGTATTGGAGAATTCAGCTCGACGCTGTCTGAGGAGCAAGTGAGTGCATCGGATGCCCTGCT
85505 GGACGCCACTTCT
66 GGACGCCACTTCT
* *
85518 TCAAGTATTGGAGAATTCAGCTCGACGCTGTCTGGGGAGCAAGTGAGTGCATCGGATGCCCTGCG
1 TCAAGTATTGGAGAATTCAGCTCGACGCTGTCTGAGGAGCAAGTGAGTGCATCGGATGCCCTGCT
85583 GGACGCCACTTCT
66 GGACGCCACTTCT
* *
85596 TCAAGTATTGAAGAATTCAGTTCGACGCTGTCTGAGGAGCAAG
1 TCAAGTATTGGAGAATTCAGCTCGACGCTGTCTGAGGAGCAAG
85639 AAAGTCCTGT
Statistics
Matches: 181, Mismatches: 18, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
78 181 1.00
ACGTcount: A:0.24, C:0.22, G:0.30, T:0.24
Consensus pattern (78 bp):
TCAAGTATTGGAGAATTCAGCTCGACGCTGTCTGAGGAGCAAGTGAGTGCATCGGATGCCCTGCT
GGACGCCACTTCT
Left flanking sequence: Indices 84862 -- 85361
AGCTGCTGTCTTCTACCCCGATTGCTCCTACTTCTTCATCTCTGGGGTACACGACCCCATGGCAA
GTTTCAAGTGATCTGTCGGCCACTACGATCGGAACAGGACAATTGAGCTCTTCTTCTGAATTTGA
AGAGTCACCCCTGGAACAATCATTATGGGGCACTAATTCTCTTGAGACCGAAGATTGGACGCTGA
TTGAAGAATCATCCGAGAGCTCTATTGCTGAAGAGTCGACTATGGATTCGGTTGATAGTGTGAGT
TTCTCAACTCTTGATAAGAGTTCTTCTCTGGTCCCAGGCTCGACTTTGAACTCGTTCTCGAGTAA
CGAGATTCCTACGGCTTCCTCAACCGATTCCATTTCACCTAATACCAGCCCCACAGAGAGTGAAG
ACTCTACTGCAAGAGACGAGAGCTCTACGCTAGGTAATGATGGCGAGATAAGTTCGGAGTCGGTT
TCAAGTGAAGCGAGCTTGACAACGCCCTCCAATTCAGAAGGCACA
Right flanking sequence: Indices 85639 -- 86138
AAAGTCCTGTTACATCGACTGTCGGCCCGGCTTCAAATTTGAGTACAGGTCTGGGGCACCCGAGT
TCGGGAAATACTTCAGATCTCACAGAGTCTGCTTTAGTATCCCCGCTTCTGGACGAAAATCTGTC
TTCCTCTGATTCGTCCCAATTGTCTTTCACTGCTGAACAGACGCTGCGTGGGACAGAGGAAACGG
ATACTTTCGCGACTGATGTCACATCCATTTCGCATACTATAGCGACCTCCCTGGACTCGGGTGAT
CAGAGCCCAACTCGGCAGGAAACCATTGTTGACTCAGTTGTGGTGACTTCATTCTTCGAGACGCA
GTGCCCAGAATGTACTTCGTTCACAACTAGTTGGAAAACCACAAATGACGGTGTGGAAGAGACAT
ACACGGGTATAGTTGGTGTTACCACCGATGAGAATGGAACCTTATCTTCGTTCACCTCAACTCTA
GTTGAGTCTGACGCGAAATGTCCCGCTTGCAGTGGCCAAATCACC
Found at i:87646 original size:15 final size:15
Alignment explanation
Indices: 87611--87646 Score: 51
Period size: 12 Copynumber: 2.6 Consensus size: 15
87601 GCCCCCCCGA
87611 AACAGCAGCAGAGAC
1 AACAGCAGCAGAGAC
87626 --CA-CAGCAGAGAC
1 AACAGCAGCAGAGAC
87638 AACAGCAGC
1 AACAGCAGC
87647 CCCAGCAGCA
Statistics
Matches: 18, Mismatches: 0, Indels: 6
0.75 0.00 0.25
Matches are distributed among these distances:
12 10 0.56
13 2 0.11
14 2 0.11
15 4 0.22
ACGTcount: A:0.44, C:0.31, G:0.25, T:0.00
Consensus pattern (15 bp):
AACAGCAGCAGAGAC
Left flanking sequence: Indices 87111 -- 87610
CGCTAAACAAATCTCTCATAACGGCTCTAAGCCACAGGTCACAATAACGGTTTCCTAATCCGGTG
ACGGGTTGCATACTGTCAAAACATAGGCACGGCCTAAATCTCACGGTTACGTCAGAGGGTCGCCA
CATAAGAAGAGCAGGCTGCCCTAGTCAGCCTCACTTCTTATTTCCGTTTGCGCGTCGCCTGCGCC
CCGGTAGCAAAGCCTTGCTGTCGGTCATCATTCTTTGCTATAGCCCGGTGGGCACATGCAGAATC
TAAATAATAATAGAGACGGATCACTCATGTCGGTGAAGTTTGCCTCTGTAATTTCACGCATAAAA
TTTGGAATATTTACCCTTATTCACCACTTGAGTTGATCGATTTCCACTAAAACTACACGCATCAT
GGGCACCCAAGAACCTCCCTCCTACAATGAAGTGATGAGCCTGCCCGGCCAGGGCCTGTCTCGTC
CTGCGAGACAGCCCCAGCCTAGCAGAAAGCAGCAGGCCCCCCCGA
Right flanking sequence: Indices 87647 -- 88146
CCCAGCAGCAGTACCACCAGCCTCAGCAACACCATCAGCAGCAGTATCAGCAGCCTCAGCATCCC
TACCAACAGCCGCATCACCCCCAGCAAGCCCACCACGGCCAGCAAAAGTACTACACGGGCCAACC
AGGCCAGCACCGCGTGTATGTCCAACAGGCCCAGCCCATCTATGTGCAGCAGCCAGCTCCCCAGC
AAGATGATGGGTGCTGTGCTTCATGTTGCTGCGCCTGTTGTGCAGCATGCTGTGCAATCTTGACA
TGTGGTATCATTATTTGAGTGGAATGATACACAATGGTGATACCGTGGGATGGTCCTGGTGATCC
CGGCAGGCGCGGGATTGAATCGAACAGTGCAATCTAGCATAATATATAGCTAATCTTCATGTTAA
TACCATCATCATTAAGGAGAACTTTTGTAGCTCCAAGACATACAGCTTGTTTTACCGAGACTCGG
TTTCATCTGTCAAACCTGACACATGCAAAACTCCCAATCAAACGT
Found at i:95052 original size:11 final size:11
Alignment explanation
Indices: 95036--95152 Score: 87
Period size: 11 Copynumber: 10.6 Consensus size: 11
95026 TCCAACCTTG
95036 CTCTTACCATC
1 CTCTTACCATC
95047 CTCTTACCATC
1 CTCTTACCATC
95058 CTCCTT-CC-TCC
1 CT-CTTACCAT-C
95069 CTCTTACC-TCC
1 CTCTTACCAT-C
* *
95080 CTCCTACCTTC
1 CTCTTACCATC
* *
95091 CTCCTACCTTC
1 CTCTTACCATC
* *
95102 CTCCTACCTTC
1 CTCTTACCATC
** *
95113 CTCCAACCAAC
1 CTCTTACCATC
*
95124 CTCTTACCCTC
1 CTCTTACCATC
*
95135 CTCTTACCCTC
1 CTCTTACCATC
95146 CTCTTAC
1 CTCTTAC
95153 TCTCCTCTCT
Statistics
Matches: 94, Mismatches: 8, Indels: 8
0.85 0.07 0.07
Matches are distributed among these distances:
10 4 0.04
11 86 0.91
12 4 0.04
ACGTcount: A:0.13, C:0.53, G:0.00, T:0.34
Consensus pattern (11 bp):
CTCTTACCATC
Left flanking sequence: Indices 94536 -- 95035
GCTGGTGCCATGTGGTGGAACATGACGCGCGGGGGTGATGGGATGCTTTACGTAAACCATGGGAA
TACGTCCAGCACGCTTGATTCGTGTTTAGGTTGGGTACACTGGCCTGGGCTTTTGGTGTCTCTTT
TACCGAGACAAGTACGATACTGATACGAGAAGCTTGTTGATTTGTAACTCAATGACACTTTGTGT
ATTTTTAGAAGCAATTGAAGTGTTGGTTCTATTGAACAGGGTGGGGTTTTGCGTTCAAAGATAGC
GTAGGTCATATTTGTGTGGGTTTGGATTTTTAGTCCCAAGTCTGTTGTAGGCTTAATCAACAGGC
CAGAACCTGGTGGCCATCCTCATCGGTTTTGACTCGTTTTGAAACCGTCCTCTATATTTCTCTCA
TTTTCAGAAATCTACGGCTGTTTACTTTCCTCTCCCTCATTCAAACCTTCATCACCGAGTTTGGT
TTTTAAGTCACTTCACCATGTTCTTCCACCTATCCTCCAACCTTG
Right flanking sequence: Indices 95153 -- 95652
TCTCCTCTCTCTTTCGCTTGTCTATTCCTATTTACATGCTACCACACCTTCCACCACGGCTTGTT
CTGCTTCTCCACCGCCTCAATCTCTGCCAACTGCGCCTGGGCAGCCTTCACTTGCTCCGCCACCT
GCTTCGGCGTGGCCTCATCGAACAACTCCTCGTCCACCAAGTTGATGGACAAGTTGCGCTGGTCC
TTCTCAAGAGGAGACCCGATACGACCAGTCTTCCAGATGGGGTCCTGCGACAGCGACGTCTTCTT
GACAATCTCCATAAGCGCCTGCTGCTCCTTGCGACGGAGAGCCCGGCCCTGCTCGTACTCAGCCC
TCACCTCCGGAGAGAATCGGGAAATCAACTCCTCGTCGGTGGGGGTGGTGTAGATGTAGAGCAAC
ACCCCCGTGCCGATGATACACCCGCCAGCAAAATACACGCGCGCCCACCGGTACCAGAGCGGTTT
GGTAGACATGGTTGGGGTCAGGTCGTGGTGGTTTGCGATTTGAGG
Found at i:95059 original size:33 final size:32
Alignment explanation
Indices: 95022--95148 Score: 119
Period size: 33 Copynumber: 3.8 Consensus size: 32
95012 TCTTCCACCT
* * *
95022 ATCCTCCAACCTTGCTCTTACCATCCTCTTACC
1 ATCCTCCTACCTTCCTCTTACC-TCCTCCTACC
* *
95055 ATCCTCCTTCCTCCCTCTTACCTCCCTCCTACC
1 ATCCTCCTACCTTCCTCTTACCT-CCTCCTACC
* * *
95088 TTCCTCCTACCTTCCTCCTACCTTCCTCCAACC
1 ATCCTCCTACCTTCCTCTTACC-TCCTCCTACC
* * *
95121 AACCTCTTACCCTCCTCTTACCCTCCTC
1 ATCCTCCTACCTTCCTCTTA-CCTCCTC
95149 TTACTCTCCT
Statistics
Matches: 76, Mismatches: 15, Indels: 6
0.78 0.15 0.06
Matches are distributed among these distances:
32 1 0.01
33 72 0.95
34 3 0.04
ACGTcount: A:0.13, C:0.53, G:0.01, T:0.33
Consensus pattern (32 bp):
ATCCTCCTACCTTCCTCTTACCTCCTCCTACC
Left flanking sequence: Indices 94522 -- 95021
CAATCGGAGCAAATGCTGGTGCCATGTGGTGGAACATGACGCGCGGGGGTGATGGGATGCTTTAC
GTAAACCATGGGAATACGTCCAGCACGCTTGATTCGTGTTTAGGTTGGGTACACTGGCCTGGGCT
TTTGGTGTCTCTTTTACCGAGACAAGTACGATACTGATACGAGAAGCTTGTTGATTTGTAACTCA
ATGACACTTTGTGTATTTTTAGAAGCAATTGAAGTGTTGGTTCTATTGAACAGGGTGGGGTTTTG
CGTTCAAAGATAGCGTAGGTCATATTTGTGTGGGTTTGGATTTTTAGTCCCAAGTCTGTTGTAGG
CTTAATCAACAGGCCAGAACCTGGTGGCCATCCTCATCGGTTTTGACTCGTTTTGAAACCGTCCT
CTATATTTCTCTCATTTTCAGAAATCTACGGCTGTTTACTTTCCTCTCCCTCATTCAAACCTTCA
TCACCGAGTTTGGTTTTTAAGTCACTTCACCATGTTCTTCCACCT
Right flanking sequence: Indices 95149 -- 95648
TTACTCTCCTCTCTCTTTCGCTTGTCTATTCCTATTTACATGCTACCACACCTTCCACCACGGCT
TGTTCTGCTTCTCCACCGCCTCAATCTCTGCCAACTGCGCCTGGGCAGCCTTCACTTGCTCCGCC
ACCTGCTTCGGCGTGGCCTCATCGAACAACTCCTCGTCCACCAAGTTGATGGACAAGTTGCGCTG
GTCCTTCTCAAGAGGAGACCCGATACGACCAGTCTTCCAGATGGGGTCCTGCGACAGCGACGTCT
TCTTGACAATCTCCATAAGCGCCTGCTGCTCCTTGCGACGGAGAGCCCGGCCCTGCTCGTACTCA
GCCCTCACCTCCGGAGAGAATCGGGAAATCAACTCCTCGTCGGTGGGGGTGGTGTAGATGTAGAG
CAACACCCCCGTGCCGATGATACACCCGCCAGCAAAATACACGCGCGCCCACCGGTACCAGAGCG
GTTTGGTAGACATGGTTGGGGTCAGGTCGTGGTGGTTTGCGATTT
Found at i:115590 original size:23 final size:22
Alignment explanation
Indices: 115540--115625 Score: 129
Period size: 22 Copynumber: 3.9 Consensus size: 22
115530 TTCAGAGCTA
*
115540 TTACTCCAAATTGCTCGTTC-T
1 TTACTCCAAATTGCTTGTTCAT
115561 TTAACTCCAAATTGCTTTGTTCAT
1 TT-ACTCCAAATTGC-TTGTTCAT
115585 TTACTCCAAATTGCTTGTTCAT
1 TTACTCCAAATTGCTTGTTCAT
*
115607 TAACTCCAAATTGCTTGTT
1 TTACTCCAAATTGCTTGTT
115626 ATTATTCTTG
Statistics
Matches: 60, Mismatches: 2, Indels: 5
0.90 0.03 0.07
Matches are distributed among these distances:
21 2 0.03
22 38 0.63
23 17 0.28
24 3 0.05
ACGTcount: A:0.23, C:0.23, G:0.09, T:0.44
Consensus pattern (22 bp):
TTACTCCAAATTGCTTGTTCAT
Left flanking sequence: Indices 115040 -- 115539
CCCAGTGCTACCGGCTTGTGAACCAGGCGATCTTGCAGTTGCGAGACCAGACCACGTACACCGGG
GCTCCCCACGCTCCGGTGGACTTGGAGAGCCTTGACTACGACAGCTCGCCCATTGAGTTCTACGA
CGACGACGACGAGGTCCAGGTGTATGTGCCGGAGGAGCCTGCTCCCGTGAGCGACGACGAGGAAG
AGGAGGTGGAGGACGTCAGCGACGAGGAGACGACGTTGGAGCTGAAGTTGGAGCGCGTGGTGAAG
CTCTGGGCGGTGACCGAGCAGCGGATGGCGGACTTGAACATCCGGGACCTCACGAGGGTGGACGC
TACGGCGTGACGGCAGGACCGTAAAATAGTAATGAATGGTATGGTTAGGTAGTAGGGGGGACAGG
GGGGCGAAAGCTGAGTCGTTTGAGTCTAAAGCTGAGATTATGAGTTGGCTAGAGCCTACTTTGAG
AGGTATATATGGGGTCTTGGTGAGCCAGTATGCCATTCAGAGCTA
Right flanking sequence: Indices 115626 -- 116125
ATTATTCTTGTCTCAAGCTTCAATATTGTTTGGGCTAAAATCTCCAATCCACTTAGCTTCACCCT
GTGTCCGGCCAGTAACCATGTGGGGTCACCTAGTGACTGCAGAACAAGGGTCCAACACAATCGAT
CGTCGATCCACCCACATACCACCAATCAACTCTCATCAACCTCTGTTCCTACCACTCAAACTCTC
ATCATCCTCTGTTCCTACCAATTAAACCCCCATCAACCTCTCCCTGTTCCTAAAATCTCCTTTCT
AATGTCTATTCCTAAATCACAATCACCACGTCAATCACGTTGCCGGTCTCGATCCCCGTCTGGCT
CAAGTAGCGCTCGCCCTCCGTCACCTCCTCGTCCTTGTTGTTGTACACCACCACCTCCACCGGCT
CCCTCTTGTTCTCGGGGCCATACAAGTCCAGCTCGCGCCACAACGTCACCACCCGCTTCCGCAAG
TGGTCTACAGTACACCCGTACTCCGGCTGTTTCGACGAGTCAAAG
Found at i:115819 original size:31 final size:31
Alignment explanation
Indices: 115776--115861 Score: 120
Period size: 31 Copynumber: 2.8 Consensus size: 31
115766 CCCACATACC
115776 ACCAATC-AACTCTCATCAACCTCTGTTCCT
1 ACCAATCAAACTCTCATCAACCTCTGTTCCT
* *
115806 ACCACTCAAACTCTCATCATCCTCTGTTCCT
1 ACCAATCAAACTCTCATCAACCTCTGTTCCT
* * *
115837 ACCAATTAAACCCCCATCAACCTCT
1 ACCAATCAAACTCTCATCAACCTCT
115862 CCCTGTTCCT
Statistics
Matches: 48, Mismatches: 7, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
30 6 0.12
31 42 0.88
ACGTcount: A:0.28, C:0.42, G:0.02, T:0.28
Consensus pattern (31 bp):
ACCAATCAAACTCTCATCAACCTCTGTTCCT
Left flanking sequence: Indices 115276 -- 115775
CTGAAGTTGGAGCGCGTGGTGAAGCTCTGGGCGGTGACCGAGCAGCGGATGGCGGACTTGAACAT
CCGGGACCTCACGAGGGTGGACGCTACGGCGTGACGGCAGGACCGTAAAATAGTAATGAATGGTA
TGGTTAGGTAGTAGGGGGGACAGGGGGGCGAAAGCTGAGTCGTTTGAGTCTAAAGCTGAGATTAT
GAGTTGGCTAGAGCCTACTTTGAGAGGTATATATGGGGTCTTGGTGAGCCAGTATGCCATTCAGA
GCTATTACTCCAAATTGCTCGTTCTTTAACTCCAAATTGCTTTGTTCATTTACTCCAAATTGCTT
GTTCATTAACTCCAAATTGCTTGTTATTATTCTTGTCTCAAGCTTCAATATTGTTTGGGCTAAAA
TCTCCAATCCACTTAGCTTCACCCTGTGTCCGGCCAGTAACCATGTGGGGTCACCTAGTGACTGC
AGAACAAGGGTCCAACACAATCGATCGTCGATCCACCCACATACC
Right flanking sequence: Indices 115862 -- 116361
CCCTGTTCCTAAAATCTCCTTTCTAATGTCTATTCCTAAATCACAATCACCACGTCAATCACGTT
GCCGGTCTCGATCCCCGTCTGGCTCAAGTAGCGCTCGCCCTCCGTCACCTCCTCGTCCTTGTTGT
TGTACACCACCACCTCCACCGGCTCCCTCTTGTTCTCGGGGCCATACAAGTCCAGCTCGCGCCAC
AACGTCACCACCCGCTTCCGCAAGTGGTCTACAGTACACCCGTACTCCGGCTGTTTCGACGAGTC
AAAGTCCTCCGGAGAAAACTCGAGGTGGTACTTGACAAACTGGTCCCGGTCAAAAACCTTTTTTC
CGAGGTCGTTGAGCTCGGACCAATTGGAAATCAGCGGCATCGGGATCACCCCCTTCAGCCTCCGC
TTGAGCGTGTAGTACTCGGTGACCCCGTCCTTGGCCCGGGCCACGTTGAGCCGCACGTAGACATG
GGCACAATGGACGGGGATCTCGGTGAAAATGTGTTTCGCGTGGTA
Found at i:117194 original size:13 final size:13
Alignment explanation
Indices: 117176--117200 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
117166 CCATACTCTA
117176 CCAAAATAACCTC
1 CCAAAATAACCTC
117189 CCAAAATAACCT
1 CCAAAATAACCT
117201 TCGTAGTCCT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.36, G:0.00, T:0.16
Consensus pattern (13 bp):
CCAAAATAACCTC
Left flanking sequence: Indices 116676 -- 117175
CGGGCCCGGGGGGTGGTTGGTGGTTGGGAATGCGGTGGAAGGTGCACGCGGCGTGGCGGGTGGGC
GTGGAGAGTGTTTAAATCGTTTCTTGTGGTGAAACTGGCGCTGGAATTTGACGCGTGGCTGGTAT
AGGGGTAACGAGGGGAAACGAGGGTGTCACCCGGTCTGACTCAAGACTGCGCCGGATCAAAGCTG
CGGGTGGCTGCGGGAGGCACTTTCATATGAGATTCGTAAACCCCAAAGTGTCTGTTTCGCAATTG
ACCTGTTTCCGGGGGAATTATCCGGTGCCTGTTCGTTGTCGGTTGTGGTCCTGCATATTACTGGA
TACCGTGGAAGGAGAATGGACCGTAGCTGGGACGCGTTGCCTTAGCTATTTCAGGTTGAATCTGG
GGCTAGTCAGGGGCGTTTGCAAATGTAAACACGTTAGCTGGGCGTTTCCCCACACGCTAGATCTC
CAACGGCGCAAACCTTGTGATAGACCCTGTAAATCCCATACTCTA
Right flanking sequence: Indices 117201 -- 117700
TCGTAGTCCTGTGTTTTTGCTCTTCTCTACCTGCCTCGGGCCTCGTCCAAACGCGCTCTACCCTC
TGGTGGGCCCATGGCTCCCAGGCACGGTCTCCGCGTTCCTGTCGGACAATCAAGGCTTCCGGCTG
TCTGAAGTGTCTGAAAGGGGTGTTTTATATCTACAACAGGAAACATGTACAATACCAGATCAGAC
CCCCTTGTTCTAGAACGGATATGCCCCGTTGGTCCGCGATTTGCACCAGTATGCGCCGTGCCATT
GTTTCGGTGACTCTGATGTAACTGTGGCTGTCGCGACCCCTATTGGGACCAGAGACGACCCCGTC
AGTGTAGCCTGTCACCAAGCCGTGACGAGTAGCCCCGGCGACTTTTCGCCCTGAAAATACTCGGT
TGACCTTACATGGACGTTTCCTCGTCTCCTACGGTGCCGCTCGTAAGCCTCGGTTCTACCGTTCT
TACCCCACGTTTGCCCCTCCCAAAGCTTATCCCTGTTTTGCCCGT
Found at i:119865 original size:15 final size:15
Alignment explanation
Indices: 119845--119888 Score: 61
Period size: 15 Copynumber: 2.9 Consensus size: 15
119835 CGTACCAGGG
119845 GTACCTGGGGAGCCA
1 GTACCTGGGGAGCCA
*
119860 GTACCTGGGCAGCCA
1 GTACCTGGGGAGCCA
* *
119875 GTGCCAGGGGAGCC
1 GTACCTGGGGAGCC
119889 CCTACGGCAG
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
15 25 1.00
ACGTcount: A:0.18, C:0.30, G:0.41, T:0.11
Consensus pattern (15 bp):
GTACCTGGGGAGCCA
Left flanking sequence: Indices 119345 -- 119844
GCCCCGCCCCCGAAGACCGCGCCCACCACGCTCCCGGTGCCGCCCGAGCTCGTGGGCCTCTACGA
CACCGCGTTGTTCCAGCTCGTCAAGGTGCTGGTGCTGCAGCGGGTGTGGGCGATCTTGAAAAACT
ATACCGGGAACGGCGACCAGTTTGTGCGGCGGATCGTGAAGAAGTTTGGCCGGTACACGCCGTTG
CGGGCGCTCCGGTTGCTCACCGAGGACCAGGTCCAGGTGCACGGGCTGCAGCTGTTCCAGCAGGT
GTACAACACCCAGATCGAGCTCAAGTACGGCGCGATGGCGTTGCCCCAGGAGCAGTTTGAGTGTG
TGTTGATGCTCGTCAAGTTTGCGCCGCGGCTCCGCGACGAGGTGGTGTACCACCTCGAGGACAAC
CAGTTGGCGTGGACGATGTACAACGTGTGCCAGTACATGGACCGTCGCGAGCCGCCGCGCCAGCA
GTACCAGTACCAGCAGCCCAAGGCGCCGCTGCACCCGTACCAGGG
Right flanking sequence: Indices 119889 -- 120388
CCTACGGCAGCCAATACTCGCAACCGGACCCTGCGCCGCCGGCTCGGCCGCAGGGGAAGCGAGCG
ATCTCGATCCGGCTGTTTGGCCGGCGTTCTTGTAAGAACCAGTGATTTGCATAGAGTACCAAGTA
CCAAGTACCAATGGTACGTATTTACGGAATGGATAATAGAGGAAAGGGAATTGTAGGTGAAAGGG
AGAAACTGGGTGGAGAATGGTGGAAGCGGGCTAGGAGCGGGCTGGGATGGCTCAATTGAGGTTAG
AAGATAGAGAAGTTAGGCTGGTTTGAGACTTAAGAGTTGGCTTTTTTTCTGTTATTTTATTCTGT
ATTCTATTAGCTGGTTCTATGAACCTGGCTAGATATATGGAAATACAAGAAGAACCACACCAAAC
ACACCAACCCACCAAACTGATCACAGTTTCTGTTCATCCATCACCAGTCAACCACACACACCAAC
ACGTTATAGCGATGCATAATCAATTACTTCAATTGAATCCTGTTT
Found at i:120459 original size:15 final size:15
Alignment explanation
Indices: 120439--120469 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
120429 CTATACCACT
120439 ACCACTAACACTACC
1 ACCACTAACACTACC
*
120454 ACCACTACCACTACC
1 ACCACTAACACTACC
120469 A
1 A
120470 AATAGAATTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.39, C:0.48, G:0.00, T:0.13
Consensus pattern (15 bp):
ACCACTAACACTACC
Left flanking sequence: Indices 119939 -- 120438
CAGGGGAAGCGAGCGATCTCGATCCGGCTGTTTGGCCGGCGTTCTTGTAAGAACCAGTGATTTGC
ATAGAGTACCAAGTACCAAGTACCAATGGTACGTATTTACGGAATGGATAATAGAGGAAAGGGAA
TTGTAGGTGAAAGGGAGAAACTGGGTGGAGAATGGTGGAAGCGGGCTAGGAGCGGGCTGGGATGG
CTCAATTGAGGTTAGAAGATAGAGAAGTTAGGCTGGTTTGAGACTTAAGAGTTGGCTTTTTTTCT
GTTATTTTATTCTGTATTCTATTAGCTGGTTCTATGAACCTGGCTAGATATATGGAAATACAAGA
AGAACCACACCAAACACACCAACCCACCAAACTGATCACAGTTTCTGTTCATCCATCACCAGTCA
ACCACACACACCAACACGTTATAGCGATGCATAATCAATTACTTCAATTGAATCCTGTTTAATGG
TTTGGTATGTTTTACGTACTATCTCATCACCTACCCTATACCACT
Right flanking sequence: Indices 120470 -- 120969
AATAGAATTTCCCCACGCAAAAGCGTTGGGGGGGTCTGGGGGGGCGCCGCCTGCGGCCCCCCCAG
CTATCATACAACAATCAACCCTTTTCTCACCGAGTGTAATATTGGCATCATTACTCTGAGCATTC
TCACACACAGTATTAAACCCTACAATTATCTGATTTGGATTCCTCAATTACCTTCATCTGTTACT
TTATTGGTTGTGTTGGTGAATGAGTGGTTGGTTTGAGTGTTTTCCTGAGGATTTGCAGCCATTGA
GTGGAATTGTCAGTCGGTGTCAGAAACAAAGTAGAATTGATAAGAATAGAGGAGAATTTGATAAT
AACAGAGATGAAGATAAGAAGGGATAAGAATGGATAAGAAAATGGATCAATTGAGCGCATTAGTT
ACGGGCAAATAGACTGAAATAGTCAACCAACTCTAGAAGATAAACCTTTACAACTACGACAACCA
CTACAATCACACAACCATCTTTCCACCCATTGGACCAATCCGACC
Found at i:120801 original size:21 final size:20
Alignment explanation
Indices: 120762--120801 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
120752 GAAACAAAGT
*
120762 AGAATTGATAAGAATAGAGG
1 AGAATTGATAAGAACAGAGG
*
120782 AGAATTTGATAATAACAGAG
1 AGAA-TTGATAAGAACAGAG
120802 ATGAAGATAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.50, C:0.03, G:0.25, T:0.23
Consensus pattern (20 bp):
AGAATTGATAAGAACAGAGG
Left flanking sequence: Indices 120262 -- 120761
GAAGAACCACACCAAACACACCAACCCACCAAACTGATCACAGTTTCTGTTCATCCATCACCAGT
CAACCACACACACCAACACGTTATAGCGATGCATAATCAATTACTTCAATTGAATCCTGTTTAAT
GGTTTGGTATGTTTTACGTACTATCTCATCACCTACCCTATACCACTACCACTAACACTACCACC
ACTACCACTACCAAATAGAATTTCCCCACGCAAAAGCGTTGGGGGGGTCTGGGGGGGCGCCGCCT
GCGGCCCCCCCAGCTATCATACAACAATCAACCCTTTTCTCACCGAGTGTAATATTGGCATCATT
ACTCTGAGCATTCTCACACACAGTATTAAACCCTACAATTATCTGATTTGGATTCCTCAATTACC
TTCATCTGTTACTTTATTGGTTGTGTTGGTGAATGAGTGGTTGGTTTGAGTGTTTTCCTGAGGAT
TTGCAGCCATTGAGTGGAATTGTCAGTCGGTGTCAGAAACAAAGT
Right flanking sequence: Indices 120802 -- 121301
ATGAAGATAAGAAGGGATAAGAATGGATAAGAAAATGGATCAATTGAGCGCATTAGTTACGGGCA
AATAGACTGAAATAGTCAACCAACTCTAGAAGATAAACCTTTACAACTACGACAACCACTACAAT
CACACAACCATCTTTCCACCCATTGGACCAATCCGACCAATTGTCACGTCTGAAAAAGGTGAAAA
ATGCTGACCATCATCTTGCATAACCCATGACCTCCAAAGCCTATTTGTTGCTTTTAGCCCGATCG
GTACACGGCCACCGCCCGATACGAGGCTTTTCCGCGGTCACCAGACCGAAACGCCGCGTCCGCGC
CCCCCACCACGGGTCGGGACTTGGGCTACCGCCCGATCCATCGGCCCTTCCTTTTCCGTCGCTTT
TCCGTTGCTGGTGGGGCTCAAACTGGGTTAGGGGTAGACGCCAACCCCTCTGCCACCCCTCTCGA
TGACCCATTAGTCATCGCCCGGAGTTGTTCCGGAACTTTCGCCGT
Found at i:121707 original size:24 final size:24
Alignment explanation
Indices: 121679--121753 Score: 73
Period size: 24 Copynumber: 3.1 Consensus size: 24
121669 CTCCGTCGTG
121679 CTCCCGGTCCTCCTCCTCTCGGTC
1 CTCCCGGTCCTCCTCCTCTCGGTC
** *
121703 CTCCCCTTCCTCCTCCTCGTC-CTC
1 CTCCCGGTCCTCCTCCTC-TCGGTC
* *
121727 CTCCTGGTCC-CCTCCCCTCGTGTC
1 CTCCCGGTCCTCCTCCTCTCG-GTC
121751 CTC
1 CTC
121754 TCCGCTCCCC
Statistics
Matches: 40, Mismatches: 8, Indels: 6
0.74 0.15 0.11
Matches are distributed among these distances:
22 2 0.05
23 6 0.15
24 30 0.75
25 2 0.05
ACGTcount: A:0.00, C:0.57, G:0.12, T:0.31
Consensus pattern (24 bp):
CTCCCGGTCCTCCTCCTCTCGGTC
Left flanking sequence: Indices 121179 -- 121678
TTTCCGTCGCTTTTCCGTTGCTGGTGGGGCTCAAACTGGGTTAGGGGTAGACGCCAACCCCTCTG
CCACCCCTCTCGATGACCCATTAGTCATCGCCCGGAGTTGTTCCGGAACTTTCGCCGTCGCACCG
CTCCGAGACCCGGCCGGGTTCGCCTGTCTTGGCACCCCCGACCGGCTCTCGGAGTTTCTGAGTTC
CTCACTCCGGCCTTGACAGCAAGTGTTGCAGTAACCTGCTTACGTAACCCGGACGCCAAACGGGA
CGGTGGGTGATGGTGGCTTATATAGCGGATGCCACCCGGGTATGGCTACAGTGGTGGTGGTGCGA
TGGTCCATGGGCCAACCGGGCCCTGGGACTTGGCGTGGCCCGATCGGGGTTTGGGCGGCTCGGAT
TTGTTTGTGACACGTAACGGAAATAGACGAGCGCATACGTGGCAGCGTGTAGGCCGATGTGCTCC
CTGAGCCCCCCACAGCCCCCTCTCGCGCACGCAGCCTCCGTCGTG
Right flanking sequence: Indices 121754 -- 122253
TCCGCTCCCCAGCCATACTCCCCCACCCGCCTCCACCCCAGATCGCGCCCACCGCGCTCGCGCTG
CGCTCTGTGCACCCCACCACGCACGCACCACGCACGCACCGCGCGCGCCGCAGGGGACGCGTTAA
CACCACCTCACCCTCTTGGACACCATTTCCCACCATATAGACTTCCAGGCAGTGTCCCACCCCCC
AAATGGCCGTCCACAAGGCACTAGTCCTCTTGAGCTGTACATTCTTGGGCCTCGTGTGCGGGACC
CTCTACCTCTTTTCGCTGTACCTGCCCCAGCTCGCCAGCAGGCTCGGGTACTCTGCCACCGACCT
GCTGACGATGGTGTTGTGTGGCACCGTCGGGGTGGCGGTGGCCGGCCCCGTGGTCGGGGCGCTCG
TTGACCGCCGCGGCTACCTGTTGGCGGTGGTGCTCGGGGCGGCGTTGATCGTGTGCTCCTACGCG
GTGTTGCACCGCCAGTATGTGCGGGGCGAGCCCGCGGCACTGGTG
Found at i:121849 original size:11 final size:11
Alignment explanation
Indices: 121833--121858 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
121823 CTGTGCACCC
121833 CACCACGCACG
1 CACCACGCACG
121844 CACCACGCACG
1 CACCACGCACG
121855 CACC
1 CACC
121859 GCGCGCGCCG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.27, C:0.58, G:0.15, T:0.00
Consensus pattern (11 bp):
CACCACGCACG
Left flanking sequence: Indices 121333 -- 121832
TGTCTTGGCACCCCCGACCGGCTCTCGGAGTTTCTGAGTTCCTCACTCCGGCCTTGACAGCAAGT
GTTGCAGTAACCTGCTTACGTAACCCGGACGCCAAACGGGACGGTGGGTGATGGTGGCTTATATA
GCGGATGCCACCCGGGTATGGCTACAGTGGTGGTGGTGCGATGGTCCATGGGCCAACCGGGCCCT
GGGACTTGGCGTGGCCCGATCGGGGTTTGGGCGGCTCGGATTTGTTTGTGACACGTAACGGAAAT
AGACGAGCGCATACGTGGCAGCGTGTAGGCCGATGTGCTCCCTGAGCCCCCCACAGCCCCCTCTC
GCGCACGCAGCCTCCGTCGTGCTCCCGGTCCTCCTCCTCTCGGTCCTCCCCTTCCTCCTCCTCGT
CCTCCTCCTGGTCCCCTCCCCTCGTGTCCTCTCCGCTCCCCAGCCATACTCCCCCACCCGCCTCC
ACCCCAGATCGCGCCCACCGCGCTCGCGCTGCGCTCTGTGCACCC
Right flanking sequence: Indices 121859 -- 122358
GCGCGCGCCGCAGGGGACGCGTTAACACCACCTCACCCTCTTGGACACCATTTCCCACCATATAG
ACTTCCAGGCAGTGTCCCACCCCCCAAATGGCCGTCCACAAGGCACTAGTCCTCTTGAGCTGTAC
ATTCTTGGGCCTCGTGTGCGGGACCCTCTACCTCTTTTCGCTGTACCTGCCCCAGCTCGCCAGCA
GGCTCGGGTACTCTGCCACCGACCTGCTGACGATGGTGTTGTGTGGCACCGTCGGGGTGGCGGTG
GCCGGCCCCGTGGTCGGGGCGCTCGTTGACCGCCGCGGCTACCTGTTGGCGGTGGTGCTCGGGGC
GGCGTTGATCGTGTGCTCCTACGCGGTGTTGCACCGCCAGTATGTGCGGGGCGAGCCCGCGGCAC
TGGTGCCGCTCAGTGCCGGGGCCATGTTCTTGGTCGGGTGCGGGCTGACCTTCATCAACCTGGCG
ACGATCAAGTGTGCTGCCGTGTGCTTCCCTGCCATCCGGGGCATT
Found at i:123434 original size:6 final size:6
Alignment explanation
Indices: 123423--123461 Score: 51
Period size: 6 Copynumber: 6.2 Consensus size: 6
123413 GGTAATGTTG
*
123423 AGGTGT AGGTGT GAGGTGT AAGTGT GAGGTGT AGGTGT A
1 AGGTGT AGGTGT -AGGTGT AGGTGT -AGGTGT AGGTGT A
123462 CAGAATGTGA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
6 18 0.62
7 11 0.38
ACGTcount: A:0.21, C:0.00, G:0.49, T:0.31
Consensus pattern (6 bp):
AGGTGT
Left flanking sequence: Indices 122923 -- 123422
GGCTACGTGGGGCAGGCGTCGCAGTTGTGGGTGACGCTGGTGGCACACGGGGTGCTGTACGGGTT
CCTCTTTTGCATGATGCCGTTGCTAGTCGGCGACACGTTTGGGTTGGCGCAGTTCTCCTACAACT
GGGGCATCGTCAACTTGGCGCCCATCGTGCCCAGCTACGTGCTCACGCTGTGGTTCGGGCGGGTC
TACGACCTGCTGCTGGAGGAGGTGCCGCACACCGAGATGGTGGACGGCGCCCCCGTCACGGTGAC
GTCATTGCAGTGTGTGCGCGGGGTGGCGTGCTACGCACGGGTGTTCAGTGTGACCACCGTGGTGG
CCGTGGTGGCGGTTGCGGTGGCGATGGTGGCGGTGACGAAGCGGACGGCCCGGCGCGCCGCGTAG
GGGTGAGCCCCCAGCATTAGCATAGGCCCTGGCCAGATACCTTATAGACTAATGGATAATAGAAT
GGGTGTGGGTGTAAATGGGTGTGGGAGGGTGTTGGGGTAATGTTG
Right flanking sequence: Indices 123462 -- 123961
CAGAATGTGAGGGTGAAGGGGTAGTTGAGACTAAATACCGCCCAGTTTGGGGTAGAATGGGTCTT
TAGTCCATGGCTTATCTGGTGAGTAGATCTGTTGAGTGGACTCTTTATTCACCTAAAGACATTAC
AAGTCAGGTTTGCAAGAATTGGACTTATTCGGCCACTTCGTCACAGATAATTATCTTCGAGTCGT
TTCAAATAGGCATGGAAACGAGGTAAGGTAGAAATCCATCCCCTTGTGATCAAACAACCGTCTTG
GGGAAGAGTAGGGTAATAAGGAACAATTGAAACAATTCTACTTGGGTTAGGTGTAGCGTGTGGCT
GGTGTGTGAGTGTAGTCTGTGGGTGTAGGTTGTGGGTGTAGGGTCTGACTGGTTGAAGGTTGTAA
AGGGACGTGAGAAAGAGAAGTCGTTTATGGTATTGGGTGGTGTGAGGGATGGTTTACAAATTGGG
AAGGGTGGTGTGGTGTAAGAGTGGGGTGGGGGTGTGTGTGAATTA
Found at i:123439 original size:13 final size:13
Alignment explanation
Indices: 123421--123460 Score: 71
Period size: 13 Copynumber: 3.1 Consensus size: 13
123411 GGGGTAATGT
123421 TGAGGTGTAGGTG
1 TGAGGTGTAGGTG
*
123434 TGAGGTGTAAGTG
1 TGAGGTGTAGGTG
123447 TGAGGTGTAGGTG
1 TGAGGTGTAGGTG
123460 T
1 T
123461 ACAGAATGTG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.17, C:0.00, G:0.50, T:0.33
Consensus pattern (13 bp):
TGAGGTGTAGGTG
Left flanking sequence: Indices 122921 -- 123420
GGGGCTACGTGGGGCAGGCGTCGCAGTTGTGGGTGACGCTGGTGGCACACGGGGTGCTGTACGGG
TTCCTCTTTTGCATGATGCCGTTGCTAGTCGGCGACACGTTTGGGTTGGCGCAGTTCTCCTACAA
CTGGGGCATCGTCAACTTGGCGCCCATCGTGCCCAGCTACGTGCTCACGCTGTGGTTCGGGCGGG
TCTACGACCTGCTGCTGGAGGAGGTGCCGCACACCGAGATGGTGGACGGCGCCCCCGTCACGGTG
ACGTCATTGCAGTGTGTGCGCGGGGTGGCGTGCTACGCACGGGTGTTCAGTGTGACCACCGTGGT
GGCCGTGGTGGCGGTTGCGGTGGCGATGGTGGCGGTGACGAAGCGGACGGCCCGGCGCGCCGCGT
AGGGGTGAGCCCCCAGCATTAGCATAGGCCCTGGCCAGATACCTTATAGACTAATGGATAATAGA
ATGGGTGTGGGTGTAAATGGGTGTGGGAGGGTGTTGGGGTAATGT
Right flanking sequence: Indices 123461 -- 123960
ACAGAATGTGAGGGTGAAGGGGTAGTTGAGACTAAATACCGCCCAGTTTGGGGTAGAATGGGTCT
TTAGTCCATGGCTTATCTGGTGAGTAGATCTGTTGAGTGGACTCTTTATTCACCTAAAGACATTA
CAAGTCAGGTTTGCAAGAATTGGACTTATTCGGCCACTTCGTCACAGATAATTATCTTCGAGTCG
TTTCAAATAGGCATGGAAACGAGGTAAGGTAGAAATCCATCCCCTTGTGATCAAACAACCGTCTT
GGGGAAGAGTAGGGTAATAAGGAACAATTGAAACAATTCTACTTGGGTTAGGTGTAGCGTGTGGC
TGGTGTGTGAGTGTAGTCTGTGGGTGTAGGTTGTGGGTGTAGGGTCTGACTGGTTGAAGGTTGTA
AAGGGACGTGAGAAAGAGAAGTCGTTTATGGTATTGGGTGGTGTGAGGGATGGTTTACAAATTGG
GAAGGGTGGTGTGGTGTAAGAGTGGGGTGGGGGTGTGTGTGAATT
Found at i:123828 original size:13 final size:14
Alignment explanation
Indices: 123791--123833 Score: 54
Period size: 13 Copynumber: 3.1 Consensus size: 14
123781 GTGGCTGGTG
*
123791 TGTGAGTGTA-GTC
1 TGTGGGTGTAGGTC
123804 TGTGGGTGTAGGT-
1 TGTGGGTGTAGGTC
123817 TGTGGGTGTAGGGTC
1 TGTGGGTGTA-GGTC
123832 TG
1 TG
123834 ACTGGTTGAA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
13 19 0.73
14 5 0.19
15 2 0.08
ACGTcount: A:0.09, C:0.05, G:0.49, T:0.37
Consensus pattern (14 bp):
TGTGGGTGTAGGTC
Left flanking sequence: Indices 123291 -- 123790
GACGGCCCGGCGCGCCGCGTAGGGGTGAGCCCCCAGCATTAGCATAGGCCCTGGCCAGATACCTT
ATAGACTAATGGATAATAGAATGGGTGTGGGTGTAAATGGGTGTGGGAGGGTGTTGGGGTAATGT
TGAGGTGTAGGTGTGAGGTGTAAGTGTGAGGTGTAGGTGTACAGAATGTGAGGGTGAAGGGGTAG
TTGAGACTAAATACCGCCCAGTTTGGGGTAGAATGGGTCTTTAGTCCATGGCTTATCTGGTGAGT
AGATCTGTTGAGTGGACTCTTTATTCACCTAAAGACATTACAAGTCAGGTTTGCAAGAATTGGAC
TTATTCGGCCACTTCGTCACAGATAATTATCTTCGAGTCGTTTCAAATAGGCATGGAAACGAGGT
AAGGTAGAAATCCATCCCCTTGTGATCAAACAACCGTCTTGGGGAAGAGTAGGGTAATAAGGAAC
AATTGAAACAATTCTACTTGGGTTAGGTGTAGCGTGTGGCTGGTG
Right flanking sequence: Indices 123834 -- 124333
ACTGGTTGAAGGTTGTAAAGGGACGTGAGAAAGAGAAGTCGTTTATGGTATTGGGTGGTGTGAGG
GATGGTTTACAAATTGGGAAGGGTGGTGTGGTGTAAGAGTGGGGTGGGGGTGTGTGTGAATTAGA
CGTGAATGTAGAGACAATTGGGTGGTTCGATGGATGAGGATTAGACGAAGGACGAAAGAAAGGAC
GGCTGAGATCAATTGATGGGGTTGGTACTGGCCATAATTGAGGCAATTGAATCTCTCCTCCATAG
GTATTGAGTCTGTCCTCGTTAGTTGTGAATAAGTCTGTCTGCGTAATACCACCATCGCAAGGGAT
ACGTCCCATCGCAAGGGATACATCCCGTCGCAAGAAGACGTCTGAATATACCACCATGTACACCA
TTTAAACTCTTGGCATTTCTGAGTATACTGCCATGTACACCACTTATGCTCCATATGGCATTTCT
GATCTTCGTATGCCACCATATACACCTCTTAACCCACTTCAAAGT
Found at i:124169 original size:19 final size:19
Alignment explanation
Indices: 124145--124192 Score: 78
Period size: 19 Copynumber: 2.5 Consensus size: 19
124135 CGTAATACCA
*
124145 CCATCGCAAGGGATACGTC
1 CCATCGCAAGGGATACATC
124164 CCATCGCAAGGGATACATC
1 CCATCGCAAGGGATACATC
*
124183 CCGTCGCAAG
1 CCATCGCAAG
124193 AAGACGTCTG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
19 27 1.00
ACGTcount: A:0.27, C:0.33, G:0.25, T:0.15
Consensus pattern (19 bp):
CCATCGCAAGGGATACATC
Left flanking sequence: Indices 123645 -- 124144
TCTTCGAGTCGTTTCAAATAGGCATGGAAACGAGGTAAGGTAGAAATCCATCCCCTTGTGATCAA
ACAACCGTCTTGGGGAAGAGTAGGGTAATAAGGAACAATTGAAACAATTCTACTTGGGTTAGGTG
TAGCGTGTGGCTGGTGTGTGAGTGTAGTCTGTGGGTGTAGGTTGTGGGTGTAGGGTCTGACTGGT
TGAAGGTTGTAAAGGGACGTGAGAAAGAGAAGTCGTTTATGGTATTGGGTGGTGTGAGGGATGGT
TTACAAATTGGGAAGGGTGGTGTGGTGTAAGAGTGGGGTGGGGGTGTGTGTGAATTAGACGTGAA
TGTAGAGACAATTGGGTGGTTCGATGGATGAGGATTAGACGAAGGACGAAAGAAAGGACGGCTGA
GATCAATTGATGGGGTTGGTACTGGCCATAATTGAGGCAATTGAATCTCTCCTCCATAGGTATTG
AGTCTGTCCTCGTTAGTTGTGAATAAGTCTGTCTGCGTAATACCA
Right flanking sequence: Indices 124193 -- 124692
AAGACGTCTGAATATACCACCATGTACACCATTTAAACTCTTGGCATTTCTGAGTATACTGCCAT
GTACACCACTTATGCTCCATATGGCATTTCTGATCTTCGTATGCCACCATATACACCTCTTAACC
CACTTCAAAGTTATTCCTGTATTCTAATAATCAAAGTAGTACTGGCTGGGCACCTGGCACCGGAG
ACACACGTAGATGTTGAGCTTGCGGTCAACGAGACGGGCCACGTCCTGGTCGAGCTGCTGCTTGC
ACGTAATACACCGGACAATCAGCGACATTGGTGGAGAAGCAGCTGTGTGGTGGGGTAGGGAGTGA
ATACACAGCGACGCGGGTGAGAGCAATGGCTATTAATACTGCTGAAAGGGCTGCTGAAAGGAGCT
GCTGAAAGGAGAAACGTGAATGGTTGGGCGGCAGGAAGGCGGCAGGCGGCTATTATATTCTGTCA
CCTGCATTTCCCCTAATTACGTGCTTTAAACTGAGGTAGGGAAGG
Found at i:124585 original size:13 final size:13
Alignment explanation
Indices: 124556--124593 Score: 69
Period size: 13 Copynumber: 3.0 Consensus size: 13
124546 GCTATTAATA
124556 CTGCTGAAAGG-G
1 CTGCTGAAAGGAG
124568 CTGCTGAAAGGAG
1 CTGCTGAAAGGAG
124581 CTGCTGAAAGGAG
1 CTGCTGAAAGGAG
124594 AAACGTGAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
12 11 0.44
13 14 0.56
ACGTcount: A:0.29, C:0.16, G:0.39, T:0.16
Consensus pattern (13 bp):
CTGCTGAAAGGAG
Left flanking sequence: Indices 124056 -- 124555
CTGGCCATAATTGAGGCAATTGAATCTCTCCTCCATAGGTATTGAGTCTGTCCTCGTTAGTTGTG
AATAAGTCTGTCTGCGTAATACCACCATCGCAAGGGATACGTCCCATCGCAAGGGATACATCCCG
TCGCAAGAAGACGTCTGAATATACCACCATGTACACCATTTAAACTCTTGGCATTTCTGAGTATA
CTGCCATGTACACCACTTATGCTCCATATGGCATTTCTGATCTTCGTATGCCACCATATACACCT
CTTAACCCACTTCAAAGTTATTCCTGTATTCTAATAATCAAAGTAGTACTGGCTGGGCACCTGGC
ACCGGAGACACACGTAGATGTTGAGCTTGCGGTCAACGAGACGGGCCACGTCCTGGTCGAGCTGC
TGCTTGCACGTAATACACCGGACAATCAGCGACATTGGTGGAGAAGCAGCTGTGTGGTGGGGTAG
GGAGTGAATACACAGCGACGCGGGTGAGAGCAATGGCTATTAATA
Right flanking sequence: Indices 124594 -- 125093
AAACGTGAATGGTTGGGCGGCAGGAAGGCGGCAGGCGGCTATTATATTCTGTCACCTGCATTTCC
CCTAATTACGTGCTTTAAACTGAGGTAGGGAAGGAACTGCGATTTGGAAAACGGAGATCAAAAAG
ATTAGCCATTCTGGGCGGTGTGGTGTGTGTCTGGCGGGTTGCCTTGGCCTGGGATTGGCACTTTG
TGGGCTTTAGTCGATCGTGTGCCTGGGCTAGACGAGCGCTAGAGTGCAGCGAAGTGCAGCGCACC
GCCTAGCCTGTTTCAGAGTAGCGGAAACCCAGTGCTTTGGGACATAAACGTACACACACCACACA
CAAACCACACACACACACCACACGTGGACATAGGCGGAGGCAGAAGATAGCAATCAAGCCTTGGA
TAAGCTTGCTGCATTGCTCAAGCTGGTTGGCGAGTTCGAAATGTCGCCAACTAGAGGGCTTCGAT
CAACGCTTAACCTTAATTCCCGATTGGGAAAGAGAGGGCCCATGT
Found at i:125984 original size:13 final size:12
Alignment explanation
Indices: 125965--126007 Score: 68
Period size: 13 Copynumber: 3.4 Consensus size: 12
125955 TCAAGTAAGC
125965 GAGAGGTGGGCT
1 GAGAGGTGGGCT
125977 GTAGAGGTGGGCT
1 G-AGAGGTGGGCT
125990 GAAGAGGTGGGCT
1 G-AGAGGTGGGCT
126003 GAGAG
1 GAGAG
126008 CGGTTGGTTG
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
12 5 0.17
13 24 0.83
ACGTcount: A:0.21, C:0.07, G:0.56, T:0.16
Consensus pattern (12 bp):
GAGAGGTGGGCT
Left flanking sequence: Indices 125465 -- 125964
TCACTACAAGACGTCTTGGTTTATTTTGTCTATCATTCAAAGTATATTCCGTGCTTTTTTCGAAG
GAAGCCATTTCCAACACAATAATCGCCGACTCCTACGCAACGGTAGCTACTTTACAGGATGGATC
ATCACAACAATCGATCCTCCTTATTCTCTTGTTCGTATGCATTAACTATCGACACTTGAAGGGGA
TCGTAGGGGGGTTCTTGCAAATCCGGCACAGGTAGTACCCGGGCTTTCTCGAAATCTCACGGGCA
CCCCGGATATCGATCCACTCGCTACAGATCAGACAACGAACAACTTTTTTGACACCCATGGCTTG
GAAACTACCACTCGAGATTGGTGGTATTTATACACCGCCAGGATGTTAGACGACAGTGGTAGCGT
TGGGTGAGGCAGCTAGCCGACCCAGAAGTGTTTACGAATCGGTCTGGTAGGACTCATAATATGGG
TACTCGGGGACATAAAAACAAACATGGACGCAGGGTCAAGTAAGC
Right flanking sequence: Indices 126008 -- 126507
CGGTTGGTTGTAGAACAAGGTAGATACCAGAGCTGAAGCATCTTGGTACGCTAGTGGCTTGACAA
CTGAATTCTTACCTGAGAATTGGAGGCATTCATTTTTGCAATCCCATGGAAATTTTGCAACTATC
CAAGCAAAGTAGGACACAAATGCTTACCACATTGGAAGTGATGTGCATACCACTCGAGTTTCTGG
TTTGACGATAAGACGAGGGACCCGAGGATAGTCGGATTTCCCCGCTCTCGAGAGCTAAAACTGAG
GTGGTATTAGATTTAGTGGAGAAAAAGCCCTACGAGCCATGAAGACAGGCATTAGCTAAAAGAAA
TGAAGAACATTGTACTTGATAAGCACTGGCTGGAAATAAGCCAGGGCGTTGCCCAAACCTCTCGC
TGAGTTCAAAGCACTACCATCAAGATACCAACTCTCACATCATGTACCACAGCCAATTGAGTAGC
CAGGGGATAATTGGCCATAATGGTGACTACTATGCCTCTATACTT
Found at i:126546 original size:18 final size:18
Alignment explanation
Indices: 126525--126577 Score: 74
Period size: 18 Copynumber: 3.0 Consensus size: 18
126515 TCACCTCCCT
126525 CTCCTCCCTCGCCTCTCC
1 CTCCTCCCTCGCCTCTCC
*
126543 CTCC-CCACTCGCCTCTTC
1 CTCCTCC-CTCGCCTCTCC
126561 CTCCTCCC-CGCCTCTCC
1 CTCCTCCCTCGCCTCTCC
126578 TCTTCAAACC
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
17 10 0.32
18 19 0.61
19 2 0.06
ACGTcount: A:0.02, C:0.66, G:0.06, T:0.26
Consensus pattern (18 bp):
CTCCTCCCTCGCCTCTCC
Left flanking sequence: Indices 126025 -- 126524
AGGTAGATACCAGAGCTGAAGCATCTTGGTACGCTAGTGGCTTGACAACTGAATTCTTACCTGAG
AATTGGAGGCATTCATTTTTGCAATCCCATGGAAATTTTGCAACTATCCAAGCAAAGTAGGACAC
AAATGCTTACCACATTGGAAGTGATGTGCATACCACTCGAGTTTCTGGTTTGACGATAAGACGAG
GGACCCGAGGATAGTCGGATTTCCCCGCTCTCGAGAGCTAAAACTGAGGTGGTATTAGATTTAGT
GGAGAAAAAGCCCTACGAGCCATGAAGACAGGCATTAGCTAAAAGAAATGAAGAACATTGTACTT
GATAAGCACTGGCTGGAAATAAGCCAGGGCGTTGCCCAAACCTCTCGCTGAGTTCAAAGCACTAC
CATCAAGATACCAACTCTCACATCATGTACCACAGCCAATTGAGTAGCCAGGGGATAATTGGCCA
TAATGGTGACTACTATGCCTCTATACTTCCTCTCGTCACCTCCCT
Right flanking sequence: Indices 126578 -- 127077
TCTTCAAACCATTACCTACTCACCCCGTCCCACACACACCACCCCAATACACCTTCTACACCACC
CTGCACAACCCCCCACGCCCCGTTCGCCAATTGCTTGGCTCCACCGCCGCCAAGTCCTCGTCGAC
TTTCACCCACTATATACACTCCCCACCACCATCCTCCTCACTCATGTTGGTCCTCCCTCACACGC
CTCCGCTACCACGGGATGAGCCCAAACTCCCCAATCGCGACGCTGTAGTAGCGGCGGCTGCTCAA
GGCACCGCCAACTACTCGCACTGCCTCAAGTACCTCACGGCGCTAGAGCACTACCTCGACCAGGT
GTGGACCCTGGAGGCCTCCGCCACCCTCACCAAGAGCCCCTGGATTGACCGGGCCCAGGTGCTTG
TGCGAGAAGAGGTGAAGTCTCCCTCCGACACCCTCCGGAGGGGCCTCCTGAAGTTGTCAATTACT
CCCTCGGAGGAGGGAGACGAAACCCAGGAAATCAAAGGCATAACC
Found at i:136686 original size:11 final size:11
Alignment explanation
Indices: 136650--136680 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
136640 TGTGACGGTT
136650 AAGGGTTTGAG
1 AAGGGTTTGAG
*
136661 AAGAGTTTGAG
1 AAGGGTTTGAG
136672 AAGGGTTTG
1 AAGGGTTTG
136681 GAAAGGATGG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.29, C:0.00, G:0.42, T:0.29
Consensus pattern (11 bp):
AAGGGTTTGAG
Left flanking sequence: Indices 136150 -- 136649
CCAAGCTCAATTTGGCGGTGGTGCCCGGTGTCAAGGCCAAAAAGGGCAAGAAGGGCAAGGTTTTC
GTGGACGACCACGACCTGTTGTTGATGAAGCGGCTTGTGCTGTCGATCAACGACAAGTATGACAC
CGTTAACGAGTCCAAGTTGGAGAAACTGAAGCGGTTGGAGGAGTTGCGGGCACTCAAGCGCGAGG
AAATGGAGCGCAAGGAGCAGGCCAAGCACGACAAGTTGGAGGGCAAGAAGAGTGAGTTGAAGCTG
AAGGCGCTGGCGGCGCGGGCGGCCCGGCGGAAGCACGCGAAGGAGCGCGAGAGAGAGGAAGCGGC
CGAGGCCGAGAAGCCCGCGAAGAAGCGGAAGAAGGTGGCGTTTGCCTAGGTGGGCGTTTGTAGCA
TTAATGGTATGGTCATGGATTAGTTGTTAGTGAGCTGGTTGCAAAAGCTGCGACCACTTTCCCAA
AGGGGAAAGGTGTAGGGTGGGTTTAGCGAGGAGGGTGTGACGGTT
Right flanking sequence: Indices 136681 -- 137180
GAAAGGATGGAGTTGTAGAGAGGGGTGCTATGTAGTGTTGGCTAGTTGGTTATGTGGAACACGTA
CCATTATAGCAATTCTCCAACCCCGTACTTTATCTCCTATTCTGTTAGCGGCAAACTTTTAGAGT
CGTTTCAATATACGGTACATCCCAGACCGTTCACCAGACTCGCGTACGCAAGGCACTACAGTAAT
CAACCACAGCTCACAATTAGACCCGCATTCTTCCATTTTGCCCTTCGTCTCCAACTACCTCCGTT
TCCTATCACCCTTTCATTGCCTCCTCTACATCTTCTTAGCCGAGTGTCCTGCATCCACGCCACCA
GAGGTCATCTACCTCCACACTACGGCTGACTCTGAGCATCTCCAGAGAGCACAAAACCACACTGA
GATCACACCGAACCTCCACTATCCCCACCACCTTGCACCCACCCACCAGCTTGCTCGCACCCACC
CACGCCGCCTACCCCTCCAATCATCGCTGTTGCGAGCCTTGGCCA
Found at i:137115 original size:18 final size:18
Alignment explanation
Indices: 137094--137135 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
137084 CTCCACTATC
137094 CCCACCACCTTGCACCCA
1 CCCACCACCTTGCACCCA
* * *
137112 CCCACCAGCTTGCTCGCA
1 CCCACCACCTTGCACCCA
137130 CCCACC
1 CCCACC
137136 CACGCCGCCT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.19, C:0.60, G:0.10, T:0.12
Consensus pattern (18 bp):
CCCACCACCTTGCACCCA
Left flanking sequence: Indices 136594 -- 137093
CACTTTCCCAAAGGGGAAAGGTGTAGGGTGGGTTTAGCGAGGAGGGTGTGACGGTTAAGGGTTTG
AGAAGAGTTTGAGAAGGGTTTGGAAAGGATGGAGTTGTAGAGAGGGGTGCTATGTAGTGTTGGCT
AGTTGGTTATGTGGAACACGTACCATTATAGCAATTCTCCAACCCCGTACTTTATCTCCTATTCT
GTTAGCGGCAAACTTTTAGAGTCGTTTCAATATACGGTACATCCCAGACCGTTCACCAGACTCGC
GTACGCAAGGCACTACAGTAATCAACCACAGCTCACAATTAGACCCGCATTCTTCCATTTTGCCC
TTCGTCTCCAACTACCTCCGTTTCCTATCACCCTTTCATTGCCTCCTCTACATCTTCTTAGCCGA
GTGTCCTGCATCCACGCCACCAGAGGTCATCTACCTCCACACTACGGCTGACTCTGAGCATCTCC
AGAGAGCACAAAACCACACTGAGATCACACCGAACCTCCACTATC
Right flanking sequence: Indices 137136 -- 137635
CACGCCGCCTACCCCTCCAATCATCGCTGTTGCGAGCCTTGGCCACGCGCGGAACACTTCCCTTA
CAGTCGCCACACCCAACCCCAGTGTCTTCCTAGCGCCTCCATTTCCTGTTTATGCACGGAACTGG
GTGGTACACTATAGCTATTGATGCCCCCACAGACTACGACGACTACCGTACCCTGTCTGTTGCCA
TCGAAACCATCGATCCCTCCCAAATGAACGCTCCCGTGACGGCTCTGGTGGTCTGTGAGGGCACA
GTGCGGCTCTACCGCGAGTTCCTGAACGTTGCTGGCCCTGATATGGGTCTTGCTGGCCCTCCACT
GTACCCTGGCTCTGCCATTGACCCCTCCGAACCCCGGTCTGAGCCCACTATAGGGGCCCTCTCCG
CGAAAAATGGCAAACGACGGACGCTGTCGGTGTCCAAGCCGCCTCCGACGAGTGCTGACGTGACT
TCAGAGGCAATGGTGGCCATCGTAGCGATACCCAACTACTTTACT
Found at i:141818 original size:13 final size:15
Alignment explanation
Indices: 141784--141826 Score: 86
Period size: 15 Copynumber: 2.9 Consensus size: 15
141774 TATCCAATGT
141784 CCTCTCTTCCCGTGC
1 CCTCTCTTCCCGTGC
141799 CCTCTCTTCCCGTGC
1 CCTCTCTTCCCGTGC
141814 CCTCTCTTCCCGT
1 CCTCTCTTCCCGT
141827 AGACCACCTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 28 1.00
ACGTcount: A:0.00, C:0.53, G:0.12, T:0.35
Consensus pattern (15 bp):
CCTCTCTTCCCGTGC
Left flanking sequence: Indices 141284 -- 141783
TTGTAGGAGTTGTATAGTGTAGAGAGCTCGGCCGATGGTTTTAGCCCGTTTTGGAGAGCTGTACG
ACGCTGTAGTACGTCATCCAGTGGTAAAAAATAGAAGCTTTGGTTCACTGGTGATGGGACTAGTG
TCAGGGGTAATCTGTTGGAGGTAAGCTGTTAGAGGTTTTAAAGCCTTGCATCTACCAATTCTAGT
ACCAATTGGCTGTTCCACAGGACCCGGACCCCACGGGTCCCAAAGTGAGCGTTGATGAAATGATA
GCCAAAGCCCGTGACGAGATAAGTAACAACAAATATTTTACTTCGTTTCCCTACGTGGCTCTGGT
GGTCTGAACCTTGCAGCTGGGCCCATCATCTCAATCGACCTCTAATATCTAGCCATCTCTAGTCT
AGTTCCCCTCTGGCGGATTACATATCTCACACCAGTGACATCATCACCGACCAAACCATATAACA
CACCCCCACATTCAAAAGTCATACTAGCCACCCACTATCCAATGT
Right flanking sequence: Indices 141827 -- 142326
AGACCACCTTCCCGTTATCTCCCATCTCCCATTTCCACGTGACCTCCGTCACATGGCCCCATCGC
GATGAGACAAAAATCCATCGCAGCTAATCACGGTATGGGTGAACTCAAGAAGAGCGAGGAGGCGT
TCCCGCGTGGGGGAGGCACCGCGTTGACTCCCCTAGAGCTTAAGGAGATCCACAACGAGGCCGCC
CGTGACGTGTTGTTTGAGACCCAGGCGGCTCCGCTGAAAAAGCGTCCGGCAAAGGCGCTCCCAGC
CAAGAAGAAGGCGAAAAAGGCCGCTGCCGAGGCCGACGAAGACGAGGCCATGGCTGTCGAGCACT
TGTGGCCCCGCAACTTGGTGCCTGGCACCCCGGTGCTCGGCCAGGTGGCCCAGATCACCCGTCTT
GAGCTTGCCCTCGCGATCGGGGACAACCTCATCGGGTACGTGCCCATCACCCAGATCTCGCCCCA
GGTGACTGCGGCGGTCGAGGCGTACGAGCAGGAGGGTGGCGAAGA
Found at i:141838 original size:30 final size:30
Alignment explanation
Indices: 141784--141841 Score: 82
Period size: 30 Copynumber: 1.9 Consensus size: 30
141774 TATCCAATGT
* *
141784 CCTCTCTTCCCGTGCCCTCTCTTCCCGTGC
1 CCTCTCTTCCCGTGACCACTCTTCCCGTGC
141814 CCTCTCTTCCCGTAGACCAC-CTTCCCGT
1 CCTCTCTTCCCGT-GACCACTCTTCCCGT
141842 TATCTCCCAT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
30 21 0.84
31 4 0.16
ACGTcount: A:0.05, C:0.52, G:0.12, T:0.31
Consensus pattern (30 bp):
CCTCTCTTCCCGTGACCACTCTTCCCGTGC
Left flanking sequence: Indices 141284 -- 141783
TTGTAGGAGTTGTATAGTGTAGAGAGCTCGGCCGATGGTTTTAGCCCGTTTTGGAGAGCTGTACG
ACGCTGTAGTACGTCATCCAGTGGTAAAAAATAGAAGCTTTGGTTCACTGGTGATGGGACTAGTG
TCAGGGGTAATCTGTTGGAGGTAAGCTGTTAGAGGTTTTAAAGCCTTGCATCTACCAATTCTAGT
ACCAATTGGCTGTTCCACAGGACCCGGACCCCACGGGTCCCAAAGTGAGCGTTGATGAAATGATA
GCCAAAGCCCGTGACGAGATAAGTAACAACAAATATTTTACTTCGTTTCCCTACGTGGCTCTGGT
GGTCTGAACCTTGCAGCTGGGCCCATCATCTCAATCGACCTCTAATATCTAGCCATCTCTAGTCT
AGTTCCCCTCTGGCGGATTACATATCTCACACCAGTGACATCATCACCGACCAAACCATATAACA
CACCCCCACATTCAAAAGTCATACTAGCCACCCACTATCCAATGT
Right flanking sequence: Indices 141842 -- 142341
TATCTCCCATCTCCCATTTCCACGTGACCTCCGTCACATGGCCCCATCGCGATGAGACAAAAATC
CATCGCAGCTAATCACGGTATGGGTGAACTCAAGAAGAGCGAGGAGGCGTTCCCGCGTGGGGGAG
GCACCGCGTTGACTCCCCTAGAGCTTAAGGAGATCCACAACGAGGCCGCCCGTGACGTGTTGTTT
GAGACCCAGGCGGCTCCGCTGAAAAAGCGTCCGGCAAAGGCGCTCCCAGCCAAGAAGAAGGCGAA
AAAGGCCGCTGCCGAGGCCGACGAAGACGAGGCCATGGCTGTCGAGCACTTGTGGCCCCGCAACT
TGGTGCCTGGCACCCCGGTGCTCGGCCAGGTGGCCCAGATCACCCGTCTTGAGCTTGCCCTCGCG
ATCGGGGACAACCTCATCGGGTACGTGCCCATCACCCAGATCTCGCCCCAGGTGACTGCGGCGGT
CGAGGCGTACGAGCAGGAGGGTGGCGAAGACGATGAAGACGCCCG
Found at i:142756 original size:24 final size:24
Alignment explanation
Indices: 142701--142746 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
142691 GTCCAGGCCG
* * *
142701 AGAAGGCCGAGGACAAGAAGGAAA
1 AGAAGGACAAGGACAAGAAAGAAA
142725 AGAAGGACAAGGACAAGAAAGA
1 AGAAGGACAAGGACAAGAAAGA
142747 CAGCAAGGAC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.54, C:0.11, G:0.35, T:0.00
Consensus pattern (24 bp):
AGAAGGACAAGGACAAGAAAGAAA
Left flanking sequence: Indices 142201 -- 142700
CCAGATCACCCGTCTTGAGCTTGCCCTCGCGATCGGGGACAACCTCATCGGGTACGTGCCCATCA
CCCAGATCTCGCCCCAGGTGACTGCGGCGGTCGAGGCGTACGAGCAGGAGGGTGGCGAAGACGAT
GAAGACGCCCGCTTGCCCGAATTGACCAAGCTTTTCAAGGTGGGCCAGTGGGTGATGGCCCGGGT
CACCACCAACACCATCACCGACAAGAGTGCTGCGAAGAAGACGCTTGAAATGACGATCGAGCCCG
AGGCCGTCAACCAGGGGATCGAGCCCGTGGACGTGGCCGCCCCCAACGTCATCCAGTGCTCGGTG
GCCCTGGTGGAGGACCACGGTTACATCATGACCCCGGGCATCGGGGCGCTCTCGGCATTCATCCC
GCACAAACAGGTGGCTGAGCCGCTTGCCGTGGGCTCGGTGGTGATGTGTGAAGTGCTGCTGGCCA
CCGCCAGAGCCGTCACCGTGCGCCCGGCCCGCGGGGTCCAGGCCG
Right flanking sequence: Indices 142747 -- 143246
CAGCAAGGACGCCAAGGACACCAACGCCGTGGTCACCATCTCGTCTGTTGACGCGATCCACCCCG
GTCAGGTGATCGATGCCCTTGTCGCCGAGGTGTCCGACCAGGGCCTCGGGCTCCGGGCGTTCGGG
CTCGTGGATGCGCTGGTCTCGTACGCTCAGATGCACTGCTGGACGGAGTTGGCGGCCCAGTTTGG
CGTGGGCAACCCCGTCAAGGCCCGTATTTTGGCGGTGCTTACCAAGAACGGGCAAAAGAAGCTCG
TGTTGTCGCTTCTCCCGCAGGTGCTCGGGCTCAACAACGAGCTTGGCACCGACACCGCCCTCGAG
GCGTTCTCGTACGGCCACAAGTTCGACGAGGTGCCCGTGGTGGCGGTCGACGACGACTTTTTGTA
CGTCAAGCTCGGCGCCGGCTACTACGGCGAGGTGCACCGGTCGCAGACCGACGCCAAGCACGTGG
GTGTGGTGGGTATCGAGTACCGTGTGGGCACCGCCCACCCCGCGC
Found at i:151296 original size:13 final size:13
Alignment explanation
Indices: 151278--151338 Score: 92
Period size: 13 Copynumber: 4.9 Consensus size: 13
151268 GATACCGTTT
151278 CCTACGAGGTCAG
1 CCTACGAGGTCAG
151291 CCTACGAGGTCAG
1 CCTACGAGGTCAG
151304 CCTA--AGGTCAG
1 CCTACGAGGTCAG
151315 -CTACGAGGTCAG
1 CCTACGAGGTCAG
*
151327 CTTACGAGGTCA
1 CCTACGAGGTCA
151339 ACTCCCACGA
Statistics
Matches: 44, Mismatches: 1, Indels: 6
0.86 0.02 0.12
Matches are distributed among these distances:
10 3 0.07
11 7 0.16
12 7 0.16
13 27 0.61
ACGTcount: A:0.25, C:0.28, G:0.30, T:0.18
Consensus pattern (13 bp):
CCTACGAGGTCAG
Left flanking sequence: Indices 150778 -- 151277
TGCTGGTGTCGCTGCAGCCCCCGCAGCTGCAGCAGGGGCTGGGAGACCGCATTTTTGTGTTTGCG
AAGGAGCTGTTGGAGATGATTGGCAAGTTGACGCTGGTGTTGAACCAGCAGTTGGAGATGGCCGA
GCTGTGGATCGGCGACGAGGAGCCCGAGGACGACGGGTTTGCCACCCCGCGTGCCCACACCCCTG
GGAACACCCCGGGAGCGACGACGCCAGGGCCCGTGTACAAGGACTTGTCGCGGGCGGACTCGCAG
CTGACGCTCGCCACGGCGCTGCTGACGCCGCCCAAACGCATTTCCATCGACGACTTGACCCAGTC
GTGACTGCATTATGTTCATAGACGGCGAGCAATACACGGCCTAGCTGGAGGGGGTGTGGTTCTGG
TTGACTCGTGCGGTTTACCCAGGGGTTTACAAGGCTAGTTTGGTTTACAGGTGGCTGTGATTGAC
ATGCTTACCTGGTGGCCATTCCGTGATTGGAAGAAGATACCGTTT
Right flanking sequence: Indices 151339 -- 151838
ACTCCCACGACGCTTGCATCGCTAACCACTTCCTCCTACGGCTGGCTCTCCTACCCCACCCCACA
CTCTGCTCCACCAGATGCCTGCAGCATACGACATTGCTAGGTTGCTTAGATACACACTAGATTCA
GGACAACACATTGTAGACCCGTCGAGCGGACTTCCACCGGGGTGTAATTGCCGTGTCGGTTGTGC
ATATACGCTGTGCGCCGTGCGCGATCACATGTGCAAATGTGTGGGGTTTGCAGCGGGGTACTGAG
GCCTCCGTGGTTGGCCTCGCTCTAGCAAGAGGATGTCGGTGTCGGGCGGGGTGGTGGCTTGTGCA
CGGCGTTCGTCGGACACGGCTCCACGCCCAAAGCAATCTCCGCACCCCGCTTGTGGCGTGGTTGG
TCACCTTCTGCGCGTTACGGGTGTAGTGCCAGACAATGGTTAGTTCCATCGGAGGTGGGGTACGT
CCACCGGCGTCGGAGCTCGGGGCTACGGGAAGCAAACACCAGCGC
Found at i:158654 original size:9 final size:9
Alignment explanation
Indices: 158642--158674 Score: 57
Period size: 9 Copynumber: 3.7 Consensus size: 9
158632 TTTCGCCTTT
158642 TTCACCTGC
1 TTCACCTGC
158651 TTCACCTGC
1 TTCACCTGC
*
158660 TTCACCGGC
1 TTCACCTGC
158669 TTCACC
1 TTCACC
158675 ACCTTCTTAG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
9 23 1.00
ACGTcount: A:0.12, C:0.45, G:0.12, T:0.30
Consensus pattern (9 bp):
TTCACCTGC
Left flanking sequence: Indices 158142 -- 158641
TTTGCTGTAGCTTAACGTAGCCAGGAGTAGTGTCAGGCAACGTCATGCCAGACACACATACATTC
CCGATCTGAAGCTCAGGGGCGTTGTCAACAGAAAGACTACATCTATAAATACCAGAACTTCTGCT
CCTTGGTATCAGATTCCCCCACCGTAACATGTGTGGAGCCCGCGTTATCAGCACAGGCCCGGGAC
CGTCCCGCTCGTCGGGGGGTTCGGCCCACCGTGACACGCGTAGAGCCCGTCTCGTCTCCTTTAGA
TTACCTGACCCACCGCGACCGCCTGCGGGGGGAGACCACTGTTGCGTGTGTGGAACCCGCATTCC
CGCCAAATGCACCCGGGTGGTGGGCAAAACCAAAACCTTCCCTGTTTGCGACGACTGTTCCCACT
CACCTGCGAGTGTGTTCAGAAGAATAGTGACACCCTAGAGTGACGGTTTATAGTAATACATGCGA
TGCTATGCTGAGTTTTCCTTTGCCTTGGCGGGCTTTTTCGCCTTT
Right flanking sequence: Indices 158675 -- 159174
ACCTTCTTAGCCGGTTTCTTTGCCTTCTTCACCAGCTTGTGAACTGGTTGTTTCGAGATGTTCGA
GAGAGCGTGGATGCGAGCCATGTGCGAGTTTTCTTGAGGAGCCTTGGTTTCCGTAACCTCTTCTT
TAGTCTCCCCTTTCTCACTCTTAGACTCTTCACCCTTGGAGTCTTGCTCCATGCCTTTTTCTACA
CCGTCCTCGACAAGCGGGATCGCCGTCACCTCGGCAGCCACCCCGATCGTCGACACCGTAAGCTC
GTCAAAATCGATCACCACGTCCTTGACGTACTCCAGAATGTCCACCTGCGACACCTGCAGGCTCA
ACTTGTTCAAGTGCCGGGCTACCTGGCCTGCCAGCCTGCCCTTACCGTTGGCTATAGTCAAGTGG
AACACGTGGTTCTCGTTCGGCTCCGCCGTCTCGCCTCCGTGGAGAGCAGCGGTCTCGTTGATCAA
CCGCATGATCTGTCTAAACACCGGCTGCTCGCCCACTTCCACCGC
Found at i:158680 original size:18 final size:18
Alignment explanation
Indices: 158642--158680 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
158632 TTTCGCCTTT
* **
158642 TTCACCTGCTTCACCTGC
1 TTCACCGGCTTCACCACC
158660 TTCACCGGCTTCACCACC
1 TTCACCGGCTTCACCACC
158678 TTC
1 TTC
158681 TTAGCCGGTT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.13, C:0.46, G:0.10, T:0.31
Consensus pattern (18 bp):
TTCACCGGCTTCACCACC
Left flanking sequence: Indices 158142 -- 158641
TTTGCTGTAGCTTAACGTAGCCAGGAGTAGTGTCAGGCAACGTCATGCCAGACACACATACATTC
CCGATCTGAAGCTCAGGGGCGTTGTCAACAGAAAGACTACATCTATAAATACCAGAACTTCTGCT
CCTTGGTATCAGATTCCCCCACCGTAACATGTGTGGAGCCCGCGTTATCAGCACAGGCCCGGGAC
CGTCCCGCTCGTCGGGGGGTTCGGCCCACCGTGACACGCGTAGAGCCCGTCTCGTCTCCTTTAGA
TTACCTGACCCACCGCGACCGCCTGCGGGGGGAGACCACTGTTGCGTGTGTGGAACCCGCATTCC
CGCCAAATGCACCCGGGTGGTGGGCAAAACCAAAACCTTCCCTGTTTGCGACGACTGTTCCCACT
CACCTGCGAGTGTGTTCAGAAGAATAGTGACACCCTAGAGTGACGGTTTATAGTAATACATGCGA
TGCTATGCTGAGTTTTCCTTTGCCTTGGCGGGCTTTTTCGCCTTT
Right flanking sequence: Indices 158681 -- 159180
TTAGCCGGTTTCTTTGCCTTCTTCACCAGCTTGTGAACTGGTTGTTTCGAGATGTTCGAGAGAGC
GTGGATGCGAGCCATGTGCGAGTTTTCTTGAGGAGCCTTGGTTTCCGTAACCTCTTCTTTAGTCT
CCCCTTTCTCACTCTTAGACTCTTCACCCTTGGAGTCTTGCTCCATGCCTTTTTCTACACCGTCC
TCGACAAGCGGGATCGCCGTCACCTCGGCAGCCACCCCGATCGTCGACACCGTAAGCTCGTCAAA
ATCGATCACCACGTCCTTGACGTACTCCAGAATGTCCACCTGCGACACCTGCAGGCTCAACTTGT
TCAAGTGCCGGGCTACCTGGCCTGCCAGCCTGCCCTTACCGTTGGCTATAGTCAAGTGGAACACG
TGGTTCTCGTTCGGCTCCGCCGTCTCGCCTCCGTGGAGAGCAGCGGTCTCGTTGATCAACCGCAT
GATCTGTCTAAACACCGGCTGCTCGCCCACTTCCACCGCGAGATA
Found at i:161558 original size:10 final size:10
Alignment explanation
Indices: 161543--161589 Score: 94
Period size: 10 Copynumber: 4.7 Consensus size: 10
161533 GTGTGGTAGG
161543 AGAGTGGTGA
1 AGAGTGGTGA
161553 AGAGTGGTGA
1 AGAGTGGTGA
161563 AGAGTGGTGA
1 AGAGTGGTGA
161573 AGAGTGGTGA
1 AGAGTGGTGA
161583 AGAGTGG
1 AGAGTGG
161590 AGAGTGGAGA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 37 1.00
ACGTcount: A:0.30, C:0.00, G:0.51, T:0.19
Consensus pattern (10 bp):
AGAGTGGTGA
Left flanking sequence: Indices 161043 -- 161542
ATGGTGGCGCAGATGCTTGCTGACTTGAAGACCAGTGACGACACCACCCAGAAACGCATTTTGGG
GGTGGTTGCGCCTCTCACGAAAAACAAGCGCGAGCTTGTCGAGTACTACCCGTGGTTAGGAGACG
GTGCGCGCCAGCGGTTGTTCAACGCGTTGGAGGACGACAAGCGGAGCGACGACACCCCCCAGGAG
GAGGTGTCCTCGTATCTCCAGAAGCGGGTTCCGGAGGAGGTGGAGAACCCCGAGTTCAAGCGGTA
CTTCGTGCTGCTTGTGGACTTGCACGAGCGCGACGAGCTGTTGCGGGCCAACCCCGAGTTCTTGG
AGTGGTTGGCGAGCCAGGTGCAGAAGCGCCAGGGCGACGGGCTGGAGTTTAGCCACGAGATGTTG
CGGGCCCGCCACGAGGTGTTCGGCAACCCCATGGGGATGCGCAAGGCGATGGCCGACGAGCTTTA
GAGTATCAGGAATACAATAGAACAGTAAGAGAGTAGTGTGGTAGG
Right flanking sequence: Indices 161590 -- 162089
AGAGTGGAGAGTGGAGAGTGGAGAGTGGAGAGTGGAGAGTGGAGAGTGGTATAAGAGTGGTAAGA
GTGGTGTAAGAGTGGTTTGAGAGAAGATCCACGTTGGGGTTCCGGAAATTGATTACAGTGGTTCA
GTTAGGACGAGTTAACTATGGAAACTTCGCTACGTACGACATGCGACTTTATGCCATGGAACAAG
ACTGGGACGCGAAGATATCAAATGCGACTTGCCACAATGCCATGCAACGTAGGCAGCTTATGTCT
TTTTGGCCAGAGCAACCGCGAGAGCGATGTAATTGTAGCTTCCACCCGAGAGCCTTCAGTGAGCC
ACCAGTGAGCCACCAGTGAGCCACCAGAGCCACCAGAGCCACCAGAGCCACCAGAGCCACCAGAG
CCACCAGAGAGCCACCACCAACACACCCGTTCACTTCGAAACCACCTTACATTCCCGAACTGAGA
CACTACCATTCCTAGTAATATCGTTCGATCCCTCGCTTACAATCA
Found at i:161595 original size:7 final size:7
Alignment explanation
Indices: 161583--161638 Score: 112
Period size: 7 Copynumber: 8.0 Consensus size: 7
161573 AGAGTGGTGA
161583 AGAGTGG
1 AGAGTGG
161590 AGAGTGG
1 AGAGTGG
161597 AGAGTGG
1 AGAGTGG
161604 AGAGTGG
1 AGAGTGG
161611 AGAGTGG
1 AGAGTGG
161618 AGAGTGG
1 AGAGTGG
161625 AGAGTGG
1 AGAGTGG
161632 AGAGTGG
1 AGAGTGG
161639 TATAAGAGTG
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 49 1.00
ACGTcount: A:0.29, C:0.00, G:0.57, T:0.14
Consensus pattern (7 bp):
AGAGTGG
Left flanking sequence: Indices 161083 -- 161582
ACACCACCCAGAAACGCATTTTGGGGGTGGTTGCGCCTCTCACGAAAAACAAGCGCGAGCTTGTC
GAGTACTACCCGTGGTTAGGAGACGGTGCGCGCCAGCGGTTGTTCAACGCGTTGGAGGACGACAA
GCGGAGCGACGACACCCCCCAGGAGGAGGTGTCCTCGTATCTCCAGAAGCGGGTTCCGGAGGAGG
TGGAGAACCCCGAGTTCAAGCGGTACTTCGTGCTGCTTGTGGACTTGCACGAGCGCGACGAGCTG
TTGCGGGCCAACCCCGAGTTCTTGGAGTGGTTGGCGAGCCAGGTGCAGAAGCGCCAGGGCGACGG
GCTGGAGTTTAGCCACGAGATGTTGCGGGCCCGCCACGAGGTGTTCGGCAACCCCATGGGGATGC
GCAAGGCGATGGCCGACGAGCTTTAGAGTATCAGGAATACAATAGAACAGTAAGAGAGTAGTGTG
GTAGGAGAGTGGTGAAGAGTGGTGAAGAGTGGTGAAGAGTGGTGA
Right flanking sequence: Indices 161639 -- 162138
TATAAGAGTGGTAAGAGTGGTGTAAGAGTGGTTTGAGAGAAGATCCACGTTGGGGTTCCGGAAAT
TGATTACAGTGGTTCAGTTAGGACGAGTTAACTATGGAAACTTCGCTACGTACGACATGCGACTT
TATGCCATGGAACAAGACTGGGACGCGAAGATATCAAATGCGACTTGCCACAATGCCATGCAACG
TAGGCAGCTTATGTCTTTTTGGCCAGAGCAACCGCGAGAGCGATGTAATTGTAGCTTCCACCCGA
GAGCCTTCAGTGAGCCACCAGTGAGCCACCAGTGAGCCACCAGAGCCACCAGAGCCACCAGAGCC
ACCAGAGCCACCAGAGCCACCAGAGAGCCACCACCAACACACCCGTTCACTTCGAAACCACCTTA
CATTCCCGAACTGAGACACTACCATTCCTAGTAATATCGTTCGATCCCTCGCTTACAATCACCAC
ACTACCATCGTTCGATCGACGCAGGTCCAGGTCCCCCTTCCCGTT
Found at i:161657 original size:20 final size:20
Alignment explanation
Indices: 161632--161670 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
161622 TGGAGAGTGG
161632 AGAGTGGTATAAGAGTGGTA
1 AGAGTGGTATAAGAGTGGTA
*
161652 AGAGTGGTGTAAGAGTGGT
1 AGAGTGGTATAAGAGTGGT
161671 TTGAGAGAAG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.31, C:0.00, G:0.44, T:0.26
Consensus pattern (20 bp):
AGAGTGGTATAAGAGTGGTA
Left flanking sequence: Indices 161132 -- 161631
CAAGCGCGAGCTTGTCGAGTACTACCCGTGGTTAGGAGACGGTGCGCGCCAGCGGTTGTTCAACG
CGTTGGAGGACGACAAGCGGAGCGACGACACCCCCCAGGAGGAGGTGTCCTCGTATCTCCAGAAG
CGGGTTCCGGAGGAGGTGGAGAACCCCGAGTTCAAGCGGTACTTCGTGCTGCTTGTGGACTTGCA
CGAGCGCGACGAGCTGTTGCGGGCCAACCCCGAGTTCTTGGAGTGGTTGGCGAGCCAGGTGCAGA
AGCGCCAGGGCGACGGGCTGGAGTTTAGCCACGAGATGTTGCGGGCCCGCCACGAGGTGTTCGGC
AACCCCATGGGGATGCGCAAGGCGATGGCCGACGAGCTTTAGAGTATCAGGAATACAATAGAACA
GTAAGAGAGTAGTGTGGTAGGAGAGTGGTGAAGAGTGGTGAAGAGTGGTGAAGAGTGGTGAAGAG
TGGAGAGTGGAGAGTGGAGAGTGGAGAGTGGAGAGTGGAGAGTGG
Right flanking sequence: Indices 161671 -- 162170
TTGAGAGAAGATCCACGTTGGGGTTCCGGAAATTGATTACAGTGGTTCAGTTAGGACGAGTTAAC
TATGGAAACTTCGCTACGTACGACATGCGACTTTATGCCATGGAACAAGACTGGGACGCGAAGAT
ATCAAATGCGACTTGCCACAATGCCATGCAACGTAGGCAGCTTATGTCTTTTTGGCCAGAGCAAC
CGCGAGAGCGATGTAATTGTAGCTTCCACCCGAGAGCCTTCAGTGAGCCACCAGTGAGCCACCAG
TGAGCCACCAGAGCCACCAGAGCCACCAGAGCCACCAGAGCCACCAGAGCCACCAGAGAGCCACC
ACCAACACACCCGTTCACTTCGAAACCACCTTACATTCCCGAACTGAGACACTACCATTCCTAGT
AATATCGTTCGATCCCTCGCTTACAATCACCACACTACCATCGTTCGATCGACGCAGGTCCAGGT
CCCCCTTCCCGTTTGAGTTTCCCCTCCAGGACCCCGCAACGGCCA
Found at i:161677 original size:11 final size:10
Alignment explanation
Indices: 161632--161671 Score: 55
Period size: 11 Copynumber: 3.9 Consensus size: 10
161622 TGGAGAGTGG
161632 AGAGTGGTATA
1 AGAGTGGT-TA
161643 AGAGTGG-TA
1 AGAGTGGTTA
161652 AGAGTGGTGTA
1 AGAGTGGT-TA
161663 AGAGTGGTT
1 AGAGTGGTT
161672 TGAGAGAAGA
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
9 9 0.33
10 1 0.04
11 17 0.63
ACGTcount: A:0.30, C:0.00, G:0.42, T:0.28
Consensus pattern (10 bp):
AGAGTGGTTA
Left flanking sequence: Indices 161132 -- 161631
CAAGCGCGAGCTTGTCGAGTACTACCCGTGGTTAGGAGACGGTGCGCGCCAGCGGTTGTTCAACG
CGTTGGAGGACGACAAGCGGAGCGACGACACCCCCCAGGAGGAGGTGTCCTCGTATCTCCAGAAG
CGGGTTCCGGAGGAGGTGGAGAACCCCGAGTTCAAGCGGTACTTCGTGCTGCTTGTGGACTTGCA
CGAGCGCGACGAGCTGTTGCGGGCCAACCCCGAGTTCTTGGAGTGGTTGGCGAGCCAGGTGCAGA
AGCGCCAGGGCGACGGGCTGGAGTTTAGCCACGAGATGTTGCGGGCCCGCCACGAGGTGTTCGGC
AACCCCATGGGGATGCGCAAGGCGATGGCCGACGAGCTTTAGAGTATCAGGAATACAATAGAACA
GTAAGAGAGTAGTGTGGTAGGAGAGTGGTGAAGAGTGGTGAAGAGTGGTGAAGAGTGGTGAAGAG
TGGAGAGTGGAGAGTGGAGAGTGGAGAGTGGAGAGTGGAGAGTGG
Right flanking sequence: Indices 161672 -- 162171
TGAGAGAAGATCCACGTTGGGGTTCCGGAAATTGATTACAGTGGTTCAGTTAGGACGAGTTAACT
ATGGAAACTTCGCTACGTACGACATGCGACTTTATGCCATGGAACAAGACTGGGACGCGAAGATA
TCAAATGCGACTTGCCACAATGCCATGCAACGTAGGCAGCTTATGTCTTTTTGGCCAGAGCAACC
GCGAGAGCGATGTAATTGTAGCTTCCACCCGAGAGCCTTCAGTGAGCCACCAGTGAGCCACCAGT
GAGCCACCAGAGCCACCAGAGCCACCAGAGCCACCAGAGCCACCAGAGCCACCAGAGAGCCACCA
CCAACACACCCGTTCACTTCGAAACCACCTTACATTCCCGAACTGAGACACTACCATTCCTAGTA
ATATCGTTCGATCCCTCGCTTACAATCACCACACTACCATCGTTCGATCGACGCAGGTCCAGGTC
CCCCTTCCCGTTTGAGTTTCCCCTCCAGGACCCCGCAACGGCCAG
Found at i:161924 original size:22 final size:22
Alignment explanation
Indices: 161906--161996 Score: 103
Period size: 18 Copynumber: 4.6 Consensus size: 22
161896 CGAGAGCCTT
161906 CAGTGAGCCACCAGTGAGCCAC
1 CAGTGAGCCACCAGTGAGCCAC
161928 CAGTGAGCCACCA--GAGCCAC
1 CAGTGAGCCACCAGTGAGCCAC
161948 CA--GAGCCACCA--GAGCCAC
1 CAGTGAGCCACCAGTGAGCCAC
161966 CA--GAGCCACCA--GAGCCAC
1 CAGTGAGCCACCAGTGAGCCAC
*
161984 CAGAGAGCCACCA
1 CAGTGAGCCACCA
161997 CCAACACACC
Statistics
Matches: 67, Mismatches: 0, Indels: 6
0.92 0.00 0.08
Matches are distributed among these distances:
18 36 0.54
20 18 0.27
22 13 0.19
ACGTcount: A:0.32, C:0.41, G:0.24, T:0.03
Consensus pattern (22 bp):
CAGTGAGCCACCAGTGAGCCAC
Left flanking sequence: Indices 161406 -- 161905
GGGCTGGAGTTTAGCCACGAGATGTTGCGGGCCCGCCACGAGGTGTTCGGCAACCCCATGGGGAT
GCGCAAGGCGATGGCCGACGAGCTTTAGAGTATCAGGAATACAATAGAACAGTAAGAGAGTAGTG
TGGTAGGAGAGTGGTGAAGAGTGGTGAAGAGTGGTGAAGAGTGGTGAAGAGTGGAGAGTGGAGAG
TGGAGAGTGGAGAGTGGAGAGTGGAGAGTGGAGAGTGGTATAAGAGTGGTAAGAGTGGTGTAAGA
GTGGTTTGAGAGAAGATCCACGTTGGGGTTCCGGAAATTGATTACAGTGGTTCAGTTAGGACGAG
TTAACTATGGAAACTTCGCTACGTACGACATGCGACTTTATGCCATGGAACAAGACTGGGACGCG
AAGATATCAAATGCGACTTGCCACAATGCCATGCAACGTAGGCAGCTTATGTCTTTTTGGCCAGA
GCAACCGCGAGAGCGATGTAATTGTAGCTTCCACCCGAGAGCCTT
Right flanking sequence: Indices 161997 -- 162496
CCAACACACCCGTTCACTTCGAAACCACCTTACATTCCCGAACTGAGACACTACCATTCCTAGTA
ATATCGTTCGATCCCTCGCTTACAATCACCACACTACCATCGTTCGATCGACGCAGGTCCAGGTC
CCCCTTCCCGTTTGAGTTTCCCCTCCAGGACCCCGCAACGGCCAGATCTCCGCAACGGCCTCCAC
CCCGAGCATTCACAAGCCCGCTGCACGACCCCAGACCAGGCCCGACAACGGCGTTTGTCCACCCG
ACCCGCATACCCCAAGTGGGGAAGCCACCTTTTCGCGCGCAAAGGTGAACCGAGGTTATGCAAGA
TAGCGGCTACGTCAACGTTCACAGGTAATTGTAGTGTGACAGGGTCCGAGTCGGGCTCCACGGTG
TCGGTGGTCGGCCAAAACGGGTCGGGAAACCAACCCATCGGGGGCGGTCTACGCGGACACTGGTC
CCGATGGACCACTCTGCGCCGAGCAGCCGACGGACCAGGCTCGGC
Found at i:161996 original size:11 final size:9
Alignment explanation
Indices: 161910--161988 Score: 122
Period size: 9 Copynumber: 8.3 Consensus size: 9
161900 AGCCTTCAGT
161910 GAGCCACCA
1 GAGCCACCA
161919 GTGAGCCACCA
1 --GAGCCACCA
161930 GTGAGCCACCA
1 --GAGCCACCA
161941 GAGCCACCA
1 GAGCCACCA
161950 GAGCCACCA
1 GAGCCACCA
161959 GAGCCACCA
1 GAGCCACCA
161968 GAGCCACCA
1 GAGCCACCA
161977 GAGCCACCA
1 GAGCCACCA
161986 GAG
1 GAG
161989 AGCCACCACC
Statistics
Matches: 68, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
9 48 0.71
11 20 0.29
ACGTcount: A:0.32, C:0.41, G:0.25, T:0.03
Consensus pattern (9 bp):
GAGCCACCA
Left flanking sequence: Indices 161410 -- 161909
TGGAGTTTAGCCACGAGATGTTGCGGGCCCGCCACGAGGTGTTCGGCAACCCCATGGGGATGCGC
AAGGCGATGGCCGACGAGCTTTAGAGTATCAGGAATACAATAGAACAGTAAGAGAGTAGTGTGGT
AGGAGAGTGGTGAAGAGTGGTGAAGAGTGGTGAAGAGTGGTGAAGAGTGGAGAGTGGAGAGTGGA
GAGTGGAGAGTGGAGAGTGGAGAGTGGAGAGTGGTATAAGAGTGGTAAGAGTGGTGTAAGAGTGG
TTTGAGAGAAGATCCACGTTGGGGTTCCGGAAATTGATTACAGTGGTTCAGTTAGGACGAGTTAA
CTATGGAAACTTCGCTACGTACGACATGCGACTTTATGCCATGGAACAAGACTGGGACGCGAAGA
TATCAAATGCGACTTGCCACAATGCCATGCAACGTAGGCAGCTTATGTCTTTTTGGCCAGAGCAA
CCGCGAGAGCGATGTAATTGTAGCTTCCACCCGAGAGCCTTCAGT
Right flanking sequence: Indices 161989 -- 162488
AGCCACCACCAACACACCCGTTCACTTCGAAACCACCTTACATTCCCGAACTGAGACACTACCAT
TCCTAGTAATATCGTTCGATCCCTCGCTTACAATCACCACACTACCATCGTTCGATCGACGCAGG
TCCAGGTCCCCCTTCCCGTTTGAGTTTCCCCTCCAGGACCCCGCAACGGCCAGATCTCCGCAACG
GCCTCCACCCCGAGCATTCACAAGCCCGCTGCACGACCCCAGACCAGGCCCGACAACGGCGTTTG
TCCACCCGACCCGCATACCCCAAGTGGGGAAGCCACCTTTTCGCGCGCAAAGGTGAACCGAGGTT
ATGCAAGATAGCGGCTACGTCAACGTTCACAGGTAATTGTAGTGTGACAGGGTCCGAGTCGGGCT
CCACGGTGTCGGTGGTCGGCCAAAACGGGTCGGGAAACCAACCCATCGGGGGCGGTCTACGCGGA
CACTGGTCCCGATGGACCACTCTGCGCCGAGCAGCCGACGGACCA
Found at i:164585 original size:23 final size:23
Alignment explanation
Indices: 164553--164611 Score: 100
Period size: 23 Copynumber: 2.6 Consensus size: 23
164543 ATGTATGTAG
164553 TTTTGCAGCCATTTGCAGCCACT
1 TTTTGCAGCCATTTGCAGCCACT
*
164576 TTTTGAAGCCATTTGCAGCCACT
1 TTTTGCAGCCATTTGCAGCCACT
*
164599 GTTTGCAGCCATT
1 TTTTGCAGCCATT
164612 GCAACCAACA
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 33 1.00
ACGTcount: A:0.19, C:0.27, G:0.19, T:0.36
Consensus pattern (23 bp):
TTTTGCAGCCATTTGCAGCCACT
Left flanking sequence: Indices 164053 -- 164552
TTGTCGAGACCATCTTCTCCGAGGAGGGTTTGTTGCCCGAGTGGTTGGACGACTTGGACAAGGTT
GTCGGCCGGTTGAACACCATCCGCCAGAAGTTGTACGACAACTTGGACAAGCTGGCCACCAACTG
GGACCACTTGTTGAAGCAGCGCGGTATGTTTGTCTACACCGGGTTGTCGCAGGAGCAGATGGTGC
GTTTGCGCAACGAGTACTCGGTGTACGCCACTGAGGACGGCCGGTTCTCCATCTCCGGGATCAAC
GACAACAACGTTGCCTACTTGGCCAACGCCATTAACGAGGTGGTCAAGACGACTAAAAAGTAATG
GATTAATGATTATGATAGAGCAATATATGCGAAAGAGTACGAAACGTAGTGTGGTAAGGTGAGGT
TTGAAAGCCATTTGACCGAGTTGATATACCAGAGCTTTTCCGAGGCAGGTGATTCTAGAAACCAG
GTTGCAAAACAGATGTTGTAGACGTTACTTCTATTATGTATGTAG
Right flanking sequence: Indices 164612 -- 165111
GCAACCAACAACAATTTCAATGCAAAGTCCTAAAACCAGTGCTTTATTCCAACATTGCTCAAGCG
AGAGGCTTTCCCATTCTCTTGGACTCGTCCTCCTCCTTCGCCGTCTTCTCCTTTCCGTGGGCAAC
AAACGAGTTGTAACCCCAGTTGGTCACACTAAAGAAGTACTGGCGCTGGTAGGGCTCCAACTCGG
TGCCATTGCGCAACCGCTCAGGCAAGTCGGGGTTGGACGTGTAGTACCGGGCGAACGCCACCAAC
GTACGGTCGTTGGCGGTGTCAGCAAGCACCTCCGACCAGTCAGGCATATCGTACGAGTACAGAGC
CCGCACCAAAGTGCCTCGCCACACCGCAGGCACCCAGTCCATGGGCTGCATCGACACGTCGTCCG
TCTGGTCGGAACGAGGACCCACCACAGACACATACGCAAGCTGGTTGCCCTTGTCGGCCCGGTGC
TGAAGCTCACCAAGCACGTAGCCATACTGCACCAGCGGGTGGACA
Found at i:164603 original size:13 final size:12
Alignment explanation
Indices: 164553--164609 Score: 59
Period size: 10 Copynumber: 4.9 Consensus size: 12
164543 ATGTATGTAG
164553 TTTTGCAGCCA-
1 TTTTGCAGCCAC
164564 -TTTGCAGCCAC
1 TTTTGCAGCCAC
*
164575 TTTTTGAAGCCA-
1 -TTTTGCAGCCAC
164587 -TTTGCAGCCAC
1 TTTTGCAGCCAC
164598 TGTTTGCAGCCA
1 T-TTTGCAGCCA
164610 TTGCAACCAA
Statistics
Matches: 38, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
10 19 0.50
13 19 0.50
ACGTcount: A:0.19, C:0.28, G:0.19, T:0.33
Consensus pattern (12 bp):
TTTTGCAGCCAC
Left flanking sequence: Indices 164053 -- 164552
TTGTCGAGACCATCTTCTCCGAGGAGGGTTTGTTGCCCGAGTGGTTGGACGACTTGGACAAGGTT
GTCGGCCGGTTGAACACCATCCGCCAGAAGTTGTACGACAACTTGGACAAGCTGGCCACCAACTG
GGACCACTTGTTGAAGCAGCGCGGTATGTTTGTCTACACCGGGTTGTCGCAGGAGCAGATGGTGC
GTTTGCGCAACGAGTACTCGGTGTACGCCACTGAGGACGGCCGGTTCTCCATCTCCGGGATCAAC
GACAACAACGTTGCCTACTTGGCCAACGCCATTAACGAGGTGGTCAAGACGACTAAAAAGTAATG
GATTAATGATTATGATAGAGCAATATATGCGAAAGAGTACGAAACGTAGTGTGGTAAGGTGAGGT
TTGAAAGCCATTTGACCGAGTTGATATACCAGAGCTTTTCCGAGGCAGGTGATTCTAGAAACCAG
GTTGCAAAACAGATGTTGTAGACGTTACTTCTATTATGTATGTAG
Right flanking sequence: Indices 164610 -- 165109
TTGCAACCAACAACAATTTCAATGCAAAGTCCTAAAACCAGTGCTTTATTCCAACATTGCTCAAG
CGAGAGGCTTTCCCATTCTCTTGGACTCGTCCTCCTCCTTCGCCGTCTTCTCCTTTCCGTGGGCA
ACAAACGAGTTGTAACCCCAGTTGGTCACACTAAAGAAGTACTGGCGCTGGTAGGGCTCCAACTC
GGTGCCATTGCGCAACCGCTCAGGCAAGTCGGGGTTGGACGTGTAGTACCGGGCGAACGCCACCA
ACGTACGGTCGTTGGCGGTGTCAGCAAGCACCTCCGACCAGTCAGGCATATCGTACGAGTACAGA
GCCCGCACCAAAGTGCCTCGCCACACCGCAGGCACCCAGTCCATGGGCTGCATCGACACGTCGTC
CGTCTGGTCGGAACGAGGACCCACCACAGACACATACGCAAGCTGGTTGCCCTTGTCGGCCCGGT
GCTGAAGCTCACCAAGCACGTAGCCATACTGCACCAGCGGGTGGA
Found at i:166266 original size:12 final size:12
Alignment explanation
Indices: 166214--166377 Score: 111
Period size: 12 Copynumber: 14.0 Consensus size: 12
166204 GAGTCAGTCG
*
166214 TAGACC-CCACC
1 TAGACCTCCACT
*
166225 TAAACCTCCACT
1 TAGACCTCCACT
*
166237 TGGACC-CCACT
1 TAGACCTCCACT
*
166248 GAGACCTCCACT
1 TAGACCTCCACT
* *
166260 TATACCTCCACC
1 TAGACCTCCACT
*
166272 TAGACCTCCACC
1 TAGACCTCCACT
*
166284 TAGACCTCCACC
1 TAGACCTCCACT
* * *
166296 TAGATCACCACC
1 TAGACCTCCACT
* * * *
166308 TAAAACTCTACC
1 TAGACCTCCACT
*
166320 TAAACCTCCACT
1 TAGACCTCCACT
*
166332 AAGACCTCCAC-
1 TAGACCTCCACT
*
166343 -CGACCTCCACT
1 TAGACCTCCACT
* *
166354 GAGACCTCCACG
1 TAGACCTCCACT
*
166366 AAGACCTCCACT
1 TAGACCTCCACT
166378 CCCACCCCAC
Statistics
Matches: 123, Mismatches: 26, Indels: 7
0.79 0.17 0.04
Matches are distributed among these distances:
10 9 0.07
11 14 0.11
12 100 0.81
ACGTcount: A:0.29, C:0.45, G:0.09, T:0.18
Consensus pattern (12 bp):
TAGACCTCCACT
Left flanking sequence: Indices 165714 -- 166213
GTCGTAGTACTGCAACATCAAGTCCGTGGGCACATGGTCCTGGGAGTTGCGGACCCGGGTCGTAG
GAGCGTATGCTACGCGGTGTGCAAGCTGGTTGCGACCAACCTTGATCGGTTGGAAAACTTTGGTG
TCGCCAAGCGGTTTGTTAGTAGCCATACGTCGGAGGAACTGTTTCATTGACGAGTGCCCCCGCAG
ACTACTTTATATATTTGTCTCGGTTACTAAGCATTTCTTAGCCGTCGGCAGCGTGCATAACGGAG
AGCAGTTGCTAGCGCGGGCACGTCGGGTTTGTCCCGATGGGGATGCAGGGTGCATACCGAGTGGA
AGGTAGATGCGCAGGGTGAATTTACAATAGCATCCCTTGTGGTAGCGAAGGAATGTTCTGGACCG
GACGCAAAGCACCTAATTGGGTTCGCTTAGGACCCCTTCGGCATAATGCGATGCAAAGTGACCGT
TGGAGACGAGTTTACGTGTGGTGATCCGAATCACTGAGTCAGTCG
Right flanking sequence: Indices 166378 -- 166877
CCCACCCCACCTCACCAGAACTAATACTTCAACATTAATACAAAACAATTACATATTTTACACCG
CGTGGCCACTGTAGTTGCCTGAGATCAAGTTACGCACCACAGGCACCTCGTTCCCGCCAGCAAGC
ACGGTAACGTTCTTCCCCGGAGGCTCGTGGATCTGGAACTTGATCTGGACCCCCAGCTCGTGCTC
GGAAGCCACGCCAGAGGTCATGAACCGCGCCATGAGCTTCTCCTCGGCAGCACCCGAGCCGCCAA
GCGCTAACGGGCTGGTGTAGCGCCACGTCAACCGGTTTTTGTCCTTGTTGAACGACCCGTGCGGC
GACAGCTTGGCCCCCAGCACCTCGACGTCGTTGTTCAACGCCACGGTGATCACGAGGTTCTCCAC
CACGATCTTCTCCGTCACCAGCGGGTCGGGCCGCACCACGATGATGAGCAGGGCCTGGTGGGCCT
CGTACTTCCAGATCTGCGAGATCGTGAGCGGCACCAGCGCCTCGG
Found at i:166276 original size:24 final size:24
Alignment explanation
Indices: 166214--166377 Score: 149
Period size: 24 Copynumber: 7.0 Consensus size: 24
166204 GAGTCAGTCG
*
166214 TAGACC-CCACCTAAACCTCCACT
1 TAGACCTCCACCTAGACCTCCACT
*
166237 TGGACC-CCA-CTGAGACCTCCACT
1 TAGACCTCCACCT-AGACCTCCACT
* *
166260 TATACCTCCACCTAGACCTCCACC
1 TAGACCTCCACCTAGACCTCCACT
* * *
166284 TAGACCTCCACCTAGATCACCACC
1 TAGACCTCCACCTAGACCTCCACT
* * * *
166308 TAAAACTCTACCTAAACCTCCACT
1 TAGACCTCCACCTAGACCTCCACT
*
166332 AAGACCTCCACC--GACCTCCACT
1 TAGACCTCCACCTAGACCTCCACT
* **
166354 GAGACCTCCACGAAGACCTCCACT
1 TAGACCTCCACCTAGACCTCCACT
166378 CCCACCCCAC
Statistics
Matches: 114, Mismatches: 22, Indels: 9
0.79 0.15 0.06
Matches are distributed among these distances:
22 21 0.18
23 22 0.19
24 69 0.61
25 2 0.02
ACGTcount: A:0.29, C:0.45, G:0.09, T:0.18
Consensus pattern (24 bp):
TAGACCTCCACCTAGACCTCCACT
Left flanking sequence: Indices 165714 -- 166213
GTCGTAGTACTGCAACATCAAGTCCGTGGGCACATGGTCCTGGGAGTTGCGGACCCGGGTCGTAG
GAGCGTATGCTACGCGGTGTGCAAGCTGGTTGCGACCAACCTTGATCGGTTGGAAAACTTTGGTG
TCGCCAAGCGGTTTGTTAGTAGCCATACGTCGGAGGAACTGTTTCATTGACGAGTGCCCCCGCAG
ACTACTTTATATATTTGTCTCGGTTACTAAGCATTTCTTAGCCGTCGGCAGCGTGCATAACGGAG
AGCAGTTGCTAGCGCGGGCACGTCGGGTTTGTCCCGATGGGGATGCAGGGTGCATACCGAGTGGA
AGGTAGATGCGCAGGGTGAATTTACAATAGCATCCCTTGTGGTAGCGAAGGAATGTTCTGGACCG
GACGCAAAGCACCTAATTGGGTTCGCTTAGGACCCCTTCGGCATAATGCGATGCAAAGTGACCGT
TGGAGACGAGTTTACGTGTGGTGATCCGAATCACTGAGTCAGTCG
Right flanking sequence: Indices 166378 -- 166877
CCCACCCCACCTCACCAGAACTAATACTTCAACATTAATACAAAACAATTACATATTTTACACCG
CGTGGCCACTGTAGTTGCCTGAGATCAAGTTACGCACCACAGGCACCTCGTTCCCGCCAGCAAGC
ACGGTAACGTTCTTCCCCGGAGGCTCGTGGATCTGGAACTTGATCTGGACCCCCAGCTCGTGCTC
GGAAGCCACGCCAGAGGTCATGAACCGCGCCATGAGCTTCTCCTCGGCAGCACCCGAGCCGCCAA
GCGCTAACGGGCTGGTGTAGCGCCACGTCAACCGGTTTTTGTCCTTGTTGAACGACCCGTGCGGC
GACAGCTTGGCCCCCAGCACCTCGACGTCGTTGTTCAACGCCACGGTGATCACGAGGTTCTCCAC
CACGATCTTCTCCGTCACCAGCGGGTCGGGCCGCACCACGATGATGAGCAGGGCCTGGTGGGCCT
CGTACTTCCAGATCTGCGAGATCGTGAGCGGCACCAGCGCCTCGG
Found at i:166292 original size:36 final size:36
Alignment explanation
Indices: 166249--166376 Score: 127
Period size: 36 Copynumber: 3.6 Consensus size: 36
166239 GACCCCACTG
*
166249 AGACCTCCACTTATACCTCCACCTAGACCTCCACCT
1 AGACCTCCACTTAGACCTCCACCTAGACCTCCACCT
* * * * * *
166285 AGACCTCCACCTAGATCACCACCTAAAACTCTACCT
1 AGACCTCCACTTAGACCTCCACCTAGACCTCCACCT
* *
166321 AAACCTCCACTAAGACCTCCACC--GACCTCCA-CT
1 AGACCTCCACTTAGACCTCCACCTAGACCTCCACCT
**
166354 GAGACCTCCACGAAGACCTCCAC
1 -AGACCTCCACTTAGACCTCCAC
166377 TCCCACCCCA
Statistics
Matches: 74, Mismatches: 17, Indels: 4
0.78 0.18 0.04
Matches are distributed among these distances:
33 2 0.03
34 25 0.34
36 47 0.64
ACGTcount: A:0.30, C:0.45, G:0.08, T:0.17
Consensus pattern (36 bp):
AGACCTCCACTTAGACCTCCACCTAGACCTCCACCT
Left flanking sequence: Indices 165749 -- 166248
GGTCCTGGGAGTTGCGGACCCGGGTCGTAGGAGCGTATGCTACGCGGTGTGCAAGCTGGTTGCGA
CCAACCTTGATCGGTTGGAAAACTTTGGTGTCGCCAAGCGGTTTGTTAGTAGCCATACGTCGGAG
GAACTGTTTCATTGACGAGTGCCCCCGCAGACTACTTTATATATTTGTCTCGGTTACTAAGCATT
TCTTAGCCGTCGGCAGCGTGCATAACGGAGAGCAGTTGCTAGCGCGGGCACGTCGGGTTTGTCCC
GATGGGGATGCAGGGTGCATACCGAGTGGAAGGTAGATGCGCAGGGTGAATTTACAATAGCATCC
CTTGTGGTAGCGAAGGAATGTTCTGGACCGGACGCAAAGCACCTAATTGGGTTCGCTTAGGACCC
CTTCGGCATAATGCGATGCAAAGTGACCGTTGGAGACGAGTTTACGTGTGGTGATCCGAATCACT
GAGTCAGTCGTAGACCCCACCTAAACCTCCACTTGGACCCCACTG
Right flanking sequence: Indices 166377 -- 166876
TCCCACCCCACCTCACCAGAACTAATACTTCAACATTAATACAAAACAATTACATATTTTACACC
GCGTGGCCACTGTAGTTGCCTGAGATCAAGTTACGCACCACAGGCACCTCGTTCCCGCCAGCAAG
CACGGTAACGTTCTTCCCCGGAGGCTCGTGGATCTGGAACTTGATCTGGACCCCCAGCTCGTGCT
CGGAAGCCACGCCAGAGGTCATGAACCGCGCCATGAGCTTCTCCTCGGCAGCACCCGAGCCGCCA
AGCGCTAACGGGCTGGTGTAGCGCCACGTCAACCGGTTTTTGTCCTTGTTGAACGACCCGTGCGG
CGACAGCTTGGCCCCCAGCACCTCGACGTCGTTGTTCAACGCCACGGTGATCACGAGGTTCTCCA
CCACGATCTTCTCCGTCACCAGCGGGTCGGGCCGCACCACGATGATGAGCAGGGCCTGGTGGGCC
TCGTACTTCCAGATCTGCGAGATCGTGAGCGGCACCAGCGCCTCG
Found at i:166348 original size:22 final size:22
Alignment explanation
Indices: 166323--166364 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
166313 CTCTACCTAA
166323 ACCTCCACTAAGACCTCCACCG
1 ACCTCCACTAAGACCTCCACCG
*
166345 ACCTCCACTGAGACCTCCAC
1 ACCTCCACTAAGACCTCCAC
166365 GAAGACCTCC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.26, C:0.50, G:0.10, T:0.14
Consensus pattern (22 bp):
ACCTCCACTAAGACCTCCACCG
Left flanking sequence: Indices 165823 -- 166322
ATCGGTTGGAAAACTTTGGTGTCGCCAAGCGGTTTGTTAGTAGCCATACGTCGGAGGAACTGTTT
CATTGACGAGTGCCCCCGCAGACTACTTTATATATTTGTCTCGGTTACTAAGCATTTCTTAGCCG
TCGGCAGCGTGCATAACGGAGAGCAGTTGCTAGCGCGGGCACGTCGGGTTTGTCCCGATGGGGAT
GCAGGGTGCATACCGAGTGGAAGGTAGATGCGCAGGGTGAATTTACAATAGCATCCCTTGTGGTA
GCGAAGGAATGTTCTGGACCGGACGCAAAGCACCTAATTGGGTTCGCTTAGGACCCCTTCGGCAT
AATGCGATGCAAAGTGACCGTTGGAGACGAGTTTACGTGTGGTGATCCGAATCACTGAGTCAGTC
GTAGACCCCACCTAAACCTCCACTTGGACCCCACTGAGACCTCCACTTATACCTCCACCTAGACC
TCCACCTAGACCTCCACCTAGATCACCACCTAAAACTCTACCTAA
Right flanking sequence: Indices 166365 -- 166864
GAAGACCTCCACTCCCACCCCACCTCACCAGAACTAATACTTCAACATTAATACAAAACAATTAC
ATATTTTACACCGCGTGGCCACTGTAGTTGCCTGAGATCAAGTTACGCACCACAGGCACCTCGTT
CCCGCCAGCAAGCACGGTAACGTTCTTCCCCGGAGGCTCGTGGATCTGGAACTTGATCTGGACCC
CCAGCTCGTGCTCGGAAGCCACGCCAGAGGTCATGAACCGCGCCATGAGCTTCTCCTCGGCAGCA
CCCGAGCCGCCAAGCGCTAACGGGCTGGTGTAGCGCCACGTCAACCGGTTTTTGTCCTTGTTGAA
CGACCCGTGCGGCGACAGCTTGGCCCCCAGCACCTCGACGTCGTTGTTCAACGCCACGGTGATCA
CGAGGTTCTCCACCACGATCTTCTCCGTCACCAGCGGGTCGGGCCGCACCACGATGATGAGCAGG
GCCTGGTGGGCCTCGTACTTCCAGATCTGCGAGATCGTGAGCGGC
Found at i:167749 original size:18 final size:18
Alignment explanation
Indices: 167726--167794 Score: 108
Period size: 18 Copynumber: 4.0 Consensus size: 18
167716 GCCAAACGAC
167726 GGCACTCTGTCCTGGCTG
1 GGCACTCTGTCCTGGCTG
167744 GGCACTCTGTCCTGGCTG
1 GGCACTCTGTCCTGGCTG
167762 GGCACTCTGTCCT-GC--
1 GGCACTCTGTCCTGGCTG
*
167777 GACACTCTGTCCTGGCTG
1 GGCACTCTGTCCTGGCTG
167795 AAACGCCGGT
Statistics
Matches: 47, Mismatches: 1, Indels: 6
0.87 0.02 0.11
Matches are distributed among these distances:
15 12 0.26
16 2 0.04
17 2 0.04
18 31 0.66
ACGTcount: A:0.07, C:0.35, G:0.30, T:0.28
Consensus pattern (18 bp):
GGCACTCTGTCCTGGCTG
Left flanking sequence: Indices 167226 -- 167725
ACACCCCCGTGTCCTGGGCGGTCAACTGGGTGGGGATCACCAGGTTACGCGTGGCAGGGAGCCCG
TGGAACATCTCCAGCGCCACCCGGGGCTTGGACGCCATCGAGCGCGAGCTGTCGGGCCCCACAGG
GTCCAGCGACGGCGCCAGCAGCGCCAGCGGAGGCGCAGAGAACGGATCGGAGCCCGGCGCCAGCG
ACGCCTCGGTGGTCTCGGTCAGCGTCTTGGCGTCCTGGCCCATCACCCCGATGGTGGCCGCACCA
AGCGCAGCCGTGCCGGCCGCCGCAGCACCGAGCACCCCGGTGGAGGGGCCCAGCGACGACTGGGC
AAACGCCAGCGGGTCCTTGGCGTCGTGGAACGGCGCCAGCGCGTCGCCGTCGTACCCGGGCGGGT
CCAGCGGGAGGTTCTTGTGGTCCAAGCCCGGGATCTCGGTGGAGCCCACCTCGGGACCCACGTGG
ATCTGCGGCTGCTGGCTGGCCCGCTCGGTCCCCTGGCCAAACGAC
Right flanking sequence: Indices 167795 -- 168294
AAACGCCGGTCCTGGCCCGGACGGTCGTCTCTGCCGCTCAACGAGCCTCGCTGGCCCGCCTGGCC
CTCGTGGTGGACCACCTTGCGCGACGGGGGCGGCGGAGGAGCCGCCTTCAGCCCGCGCTTGGCCT
GGGGCGACCCCAACTCGTGCTCGATGTTGGGCTCCGGAAGGCCCTCGTCGCCGTGCTCAAACGAG
AACTTCAGGTCGCGAGCCTCGGGGTACAAACCCGCGTTCGGGTTGCGGGAGGCGTGCTGCGGGGT
GTTGATGTCGTGGCGTTTGAGCATCAGCAACCGGTTCGGGTCCAGGTCCGACGACTCGTCCAGCA
GCTCCAGCTCGTGGTACTCGACGAAGTTGGGCGACGAGTCTGCGGCGGCGACGGCGGCGGCGGTG
GTGGGGGTGAACGGGGTCAGGAACGAGTCCTCGGGCACCGGGGTGGCGCGGTCGTGCTCGAAGGG
GGCCTTGGACAGCGCCAGCGGGATCGGCGGCGGGTTGGAGGGCTT
Found at i:167788 original size:33 final size:35
Alignment explanation
Indices: 167726--167794 Score: 106
Period size: 33 Copynumber: 2.0 Consensus size: 35
167716 GCCAAACGAC
*
167726 GGCACTCTGTCCTGGCTGGGCACTCTGTCCTGGCTG
1 GGCACTCTGTCCTGGC-GGACACTCTGTCCTGGCTG
167762 GGCACTCTGTCCT-GC-GACACTCTGTCCTGGCTG
1 GGCACTCTGTCCTGGCGGACACTCTGTCCTGGCTG
167795 AAACGCCGGT
Statistics
Matches: 32, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
33 17 0.53
35 2 0.06
36 13 0.41
ACGTcount: A:0.07, C:0.35, G:0.30, T:0.28
Consensus pattern (35 bp):
GGCACTCTGTCCTGGCGGACACTCTGTCCTGGCTG
Left flanking sequence: Indices 167226 -- 167725
ACACCCCCGTGTCCTGGGCGGTCAACTGGGTGGGGATCACCAGGTTACGCGTGGCAGGGAGCCCG
TGGAACATCTCCAGCGCCACCCGGGGCTTGGACGCCATCGAGCGCGAGCTGTCGGGCCCCACAGG
GTCCAGCGACGGCGCCAGCAGCGCCAGCGGAGGCGCAGAGAACGGATCGGAGCCCGGCGCCAGCG
ACGCCTCGGTGGTCTCGGTCAGCGTCTTGGCGTCCTGGCCCATCACCCCGATGGTGGCCGCACCA
AGCGCAGCCGTGCCGGCCGCCGCAGCACCGAGCACCCCGGTGGAGGGGCCCAGCGACGACTGGGC
AAACGCCAGCGGGTCCTTGGCGTCGTGGAACGGCGCCAGCGCGTCGCCGTCGTACCCGGGCGGGT
CCAGCGGGAGGTTCTTGTGGTCCAAGCCCGGGATCTCGGTGGAGCCCACCTCGGGACCCACGTGG
ATCTGCGGCTGCTGGCTGGCCCGCTCGGTCCCCTGGCCAAACGAC
Right flanking sequence: Indices 167795 -- 168294
AAACGCCGGTCCTGGCCCGGACGGTCGTCTCTGCCGCTCAACGAGCCTCGCTGGCCCGCCTGGCC
CTCGTGGTGGACCACCTTGCGCGACGGGGGCGGCGGAGGAGCCGCCTTCAGCCCGCGCTTGGCCT
GGGGCGACCCCAACTCGTGCTCGATGTTGGGCTCCGGAAGGCCCTCGTCGCCGTGCTCAAACGAG
AACTTCAGGTCGCGAGCCTCGGGGTACAAACCCGCGTTCGGGTTGCGGGAGGCGTGCTGCGGGGT
GTTGATGTCGTGGCGTTTGAGCATCAGCAACCGGTTCGGGTCCAGGTCCGACGACTCGTCCAGCA
GCTCCAGCTCGTGGTACTCGACGAAGTTGGGCGACGAGTCTGCGGCGGCGACGGCGGCGGCGGTG
GTGGGGGTGAACGGGGTCAGGAACGAGTCCTCGGGCACCGGGGTGGCGCGGTCGTGCTCGAAGGG
GGCCTTGGACAGCGCCAGCGGGATCGGCGGCGGGTTGGAGGGCTT
Found at i:168364 original size:21 final size:21
Alignment explanation
Indices: 168340--168379 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
168330 TCTGTTGGGA
*
168340 CTGAAGGGGTTGGTTCTGGCT
1 CTGAAGGGGCTGGTTCTGGCT
168361 CTGAAGGGGCTGGTTCTGG
1 CTGAAGGGGCTGGTTCTGG
168380 TTGAAGCCCT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.10, C:0.15, G:0.45, T:0.30
Consensus pattern (21 bp):
CTGAAGGGGCTGGTTCTGGCT
Left flanking sequence: Indices 167840 -- 168339
CCTCGCTGGCCCGCCTGGCCCTCGTGGTGGACCACCTTGCGCGACGGGGGCGGCGGAGGAGCCGC
CTTCAGCCCGCGCTTGGCCTGGGGCGACCCCAACTCGTGCTCGATGTTGGGCTCCGGAAGGCCCT
CGTCGCCGTGCTCAAACGAGAACTTCAGGTCGCGAGCCTCGGGGTACAAACCCGCGTTCGGGTTG
CGGGAGGCGTGCTGCGGGGTGTTGATGTCGTGGCGTTTGAGCATCAGCAACCGGTTCGGGTCCAG
GTCCGACGACTCGTCCAGCAGCTCCAGCTCGTGGTACTCGACGAAGTTGGGCGACGAGTCTGCGG
CGGCGACGGCGGCGGCGGTGGTGGGGGTGAACGGGGTCAGGAACGAGTCCTCGGGCACCGGGGTG
GCGCGGTCGTGCTCGAAGGGGGCCTTGGACAGCGCCAGCGGGATCGGCGGCGGGTTGGAGGGCTT
TTGCGAGAGCGAGCGCGGCTGGTTTTCCGAGAAGCTCTGTTGGGA
Right flanking sequence: Indices 168380 -- 168879
TTGAAGCCCTGGTTTTGGCCTTGTTGACCTTGGAAACCCTGGTTCTGGCCCTGGAAGCCCTGGTT
TTGGCCTTGTTGACCCTGGAAGCCCTGGTTTTGACCCTGGAAGCCCTGGTTCTGGTTTTGGAAAC
CCTGGTTTTGGCCCTGTTGACCCTGGAAACCCTGGTTCTGGCCCTGCTGGCCCTTAAAACCTTCC
CCGTGCTCCACGTCGTCCAACCCGTCCTTCTCGTGGCCCTCCACGGGCGTCCCAAAAGCACTGCT
ATCGCCAAACTCCCCACCCACCTGGGGCGTCGCAGGCAACAGGTTGTTGTTGCCAGGCACCAACG
GAGCCTGCAGCGCCAGCATGGGCGGAAGCGGCTTGCCTCGGCCCGGGATCAACTCCGGCTGGCTG
AACGGGTCGTTCTCCTGCTTGGCCAGCTCTCTCTCGGGGTGTCTGTCGTCGTCGTGGCCATGGTG
GGCCGCGTAGCCAGCAGCTCCAACAGCGCCGGCCCCCGCAGCCAC
Found at i:168422 original size:30 final size:30
Alignment explanation
Indices: 168382--168477 Score: 111
Period size: 30 Copynumber: 3.5 Consensus size: 30
168372 GGTTCTGGTT
*
168382 GAAGCCCTGGTTTTGGCCTTGTTGACCTTG
1 GAAGCCCTGGTTTTGGCCTTGTTGACCCTG
*
168412 GAAACCCTGG--TT---C-TG--G-CCCTG
1 GAAGCCCTGGTTTTGGCCTTGTTGACCCTG
168433 GAAGCCCTGGTTTTGGCCTTGTTGACCCTG
1 GAAGCCCTGGTTTTGGCCTTGTTGACCCTG
168463 GAAGCCCTGGTTTTG
1 GAAGCCCTGGTTTTG
168478 ACCCTGGAAG
Statistics
Matches: 54, Mismatches: 3, Indels: 18
0.72 0.04 0.24
Matches are distributed among these distances:
21 13 0.24
22 1 0.02
23 2 0.04
24 2 0.04
25 1 0.02
26 1 0.02
27 2 0.04
28 2 0.04
29 1 0.02
30 29 0.54
ACGTcount: A:0.11, C:0.26, G:0.30, T:0.32
Consensus pattern (30 bp):
GAAGCCCTGGTTTTGGCCTTGTTGACCCTG
Left flanking sequence: Indices 167882 -- 168381
GACGGGGGCGGCGGAGGAGCCGCCTTCAGCCCGCGCTTGGCCTGGGGCGACCCCAACTCGTGCTC
GATGTTGGGCTCCGGAAGGCCCTCGTCGCCGTGCTCAAACGAGAACTTCAGGTCGCGAGCCTCGG
GGTACAAACCCGCGTTCGGGTTGCGGGAGGCGTGCTGCGGGGTGTTGATGTCGTGGCGTTTGAGC
ATCAGCAACCGGTTCGGGTCCAGGTCCGACGACTCGTCCAGCAGCTCCAGCTCGTGGTACTCGAC
GAAGTTGGGCGACGAGTCTGCGGCGGCGACGGCGGCGGCGGTGGTGGGGGTGAACGGGGTCAGGA
ACGAGTCCTCGGGCACCGGGGTGGCGCGGTCGTGCTCGAAGGGGGCCTTGGACAGCGCCAGCGGG
ATCGGCGGCGGGTTGGAGGGCTTTTGCGAGAGCGAGCGCGGCTGGTTTTCCGAGAAGCTCTGTTG
GGACTGAAGGGGTTGGTTCTGGCTCTGAAGGGGCTGGTTCTGGTT
Right flanking sequence: Indices 168478 -- 168977
ACCCTGGAAGCCCTGGTTCTGGTTTTGGAAACCCTGGTTTTGGCCCTGTTGACCCTGGAAACCCT
GGTTCTGGCCCTGCTGGCCCTTAAAACCTTCCCCGTGCTCCACGTCGTCCAACCCGTCCTTCTCG
TGGCCCTCCACGGGCGTCCCAAAAGCACTGCTATCGCCAAACTCCCCACCCACCTGGGGCGTCGC
AGGCAACAGGTTGTTGTTGCCAGGCACCAACGGAGCCTGCAGCGCCAGCATGGGCGGAAGCGGCT
TGCCTCGGCCCGGGATCAACTCCGGCTGGCTGAACGGGTCGTTCTCCTGCTTGGCCAGCTCTCTC
TCGGGGTGTCTGTCGTCGTCGTGGCCATGGTGGGCCGCGTAGCCAGCAGCTCCAACAGCGCCGGC
CCCCGCAGCCACCGCGCCTGCGGCAGCCCCGTGGCCTCGGCCCTTGCGCAGGGTCAGACGAGAAG
GACCACCGGTCAGCGCCGTCACCAACAGCGCGTCCTCAGGGATCG
Found at i:168440 original size:21 final size:21
Alignment explanation
Indices: 168410--168450 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
168400 TTGTTGACCT
168410 TGGAAACCCTGGTTCTGGCCC
1 TGGAAACCCTGGTTCTGGCCC
* *
168431 TGGAAGCCCTGGTTTTGGCC
1 TGGAAACCCTGGTTCTGGCC
168451 TTGTTGACCC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.12, C:0.29, G:0.32, T:0.27
Consensus pattern (21 bp):
TGGAAACCCTGGTTCTGGCCC
Left flanking sequence: Indices 167910 -- 168409
GCCCGCGCTTGGCCTGGGGCGACCCCAACTCGTGCTCGATGTTGGGCTCCGGAAGGCCCTCGTCG
CCGTGCTCAAACGAGAACTTCAGGTCGCGAGCCTCGGGGTACAAACCCGCGTTCGGGTTGCGGGA
GGCGTGCTGCGGGGTGTTGATGTCGTGGCGTTTGAGCATCAGCAACCGGTTCGGGTCCAGGTCCG
ACGACTCGTCCAGCAGCTCCAGCTCGTGGTACTCGACGAAGTTGGGCGACGAGTCTGCGGCGGCG
ACGGCGGCGGCGGTGGTGGGGGTGAACGGGGTCAGGAACGAGTCCTCGGGCACCGGGGTGGCGCG
GTCGTGCTCGAAGGGGGCCTTGGACAGCGCCAGCGGGATCGGCGGCGGGTTGGAGGGCTTTTGCG
AGAGCGAGCGCGGCTGGTTTTCCGAGAAGCTCTGTTGGGACTGAAGGGGTTGGTTCTGGCTCTGA
AGGGGCTGGTTCTGGTTGAAGCCCTGGTTTTGGCCTTGTTGACCT
Right flanking sequence: Indices 168451 -- 168950
TTGTTGACCCTGGAAGCCCTGGTTTTGACCCTGGAAGCCCTGGTTCTGGTTTTGGAAACCCTGGT
TTTGGCCCTGTTGACCCTGGAAACCCTGGTTCTGGCCCTGCTGGCCCTTAAAACCTTCCCCGTGC
TCCACGTCGTCCAACCCGTCCTTCTCGTGGCCCTCCACGGGCGTCCCAAAAGCACTGCTATCGCC
AAACTCCCCACCCACCTGGGGCGTCGCAGGCAACAGGTTGTTGTTGCCAGGCACCAACGGAGCCT
GCAGCGCCAGCATGGGCGGAAGCGGCTTGCCTCGGCCCGGGATCAACTCCGGCTGGCTGAACGGG
TCGTTCTCCTGCTTGGCCAGCTCTCTCTCGGGGTGTCTGTCGTCGTCGTGGCCATGGTGGGCCGC
GTAGCCAGCAGCTCCAACAGCGCCGGCCCCCGCAGCCACCGCGCCTGCGGCAGCCCCGTGGCCTC
GGCCCTTGCGCAGGGTCAGACGAGAAGGACCACCGGTCAGCGCCG
Found at i:168443 original size:51 final size:51
Alignment explanation
Indices: 168382--168495 Score: 192
Period size: 51 Copynumber: 2.2 Consensus size: 51
168372 GGTTCTGGTT
* *
168382 GAAGCCCTGGTTTTGGCCTTGTTGACCTTGGAAACCCTGGTTCTGGCCCTG
1 GAAGCCCTGGTTTTGGCCTTGTTGACCCTGGAAACCCTGGTTCTGACCCTG
* *
168433 GAAGCCCTGGTTTTGGCCTTGTTGACCCTGGAAGCCCTGGTTTTGACCCTG
1 GAAGCCCTGGTTTTGGCCTTGTTGACCCTGGAAACCCTGGTTCTGACCCTG
168484 GAAGCCCTGGTT
1 GAAGCCCTGGTT
168496 CTGGTTTTGG
Statistics
Matches: 59, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
51 59 1.00
ACGTcount: A:0.12, C:0.27, G:0.30, T:0.31
Consensus pattern (51 bp):
GAAGCCCTGGTTTTGGCCTTGTTGACCCTGGAAACCCTGGTTCTGACCCTG
Left flanking sequence: Indices 167882 -- 168381
GACGGGGGCGGCGGAGGAGCCGCCTTCAGCCCGCGCTTGGCCTGGGGCGACCCCAACTCGTGCTC
GATGTTGGGCTCCGGAAGGCCCTCGTCGCCGTGCTCAAACGAGAACTTCAGGTCGCGAGCCTCGG
GGTACAAACCCGCGTTCGGGTTGCGGGAGGCGTGCTGCGGGGTGTTGATGTCGTGGCGTTTGAGC
ATCAGCAACCGGTTCGGGTCCAGGTCCGACGACTCGTCCAGCAGCTCCAGCTCGTGGTACTCGAC
GAAGTTGGGCGACGAGTCTGCGGCGGCGACGGCGGCGGCGGTGGTGGGGGTGAACGGGGTCAGGA
ACGAGTCCTCGGGCACCGGGGTGGCGCGGTCGTGCTCGAAGGGGGCCTTGGACAGCGCCAGCGGG
ATCGGCGGCGGGTTGGAGGGCTTTTGCGAGAGCGAGCGCGGCTGGTTTTCCGAGAAGCTCTGTTG
GGACTGAAGGGGTTGGTTCTGGCTCTGAAGGGGCTGGTTCTGGTT
Right flanking sequence: Indices 168496 -- 168995
CTGGTTTTGGAAACCCTGGTTTTGGCCCTGTTGACCCTGGAAACCCTGGTTCTGGCCCTGCTGGC
CCTTAAAACCTTCCCCGTGCTCCACGTCGTCCAACCCGTCCTTCTCGTGGCCCTCCACGGGCGTC
CCAAAAGCACTGCTATCGCCAAACTCCCCACCCACCTGGGGCGTCGCAGGCAACAGGTTGTTGTT
GCCAGGCACCAACGGAGCCTGCAGCGCCAGCATGGGCGGAAGCGGCTTGCCTCGGCCCGGGATCA
ACTCCGGCTGGCTGAACGGGTCGTTCTCCTGCTTGGCCAGCTCTCTCTCGGGGTGTCTGTCGTCG
TCGTGGCCATGGTGGGCCGCGTAGCCAGCAGCTCCAACAGCGCCGGCCCCCGCAGCCACCGCGCC
TGCGGCAGCCCCGTGGCCTCGGCCCTTGCGCAGGGTCAGACGAGAAGGACCACCGGTCAGCGCCG
TCACCAACAGCGCGTCCTCAGGGATCGCCCCCACGTCGCCGGTGT
Found at i:168478 original size:21 final size:21
Alignment explanation
Indices: 168454--168495 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
168444 TTTGGCCTTG
168454 TTGACCCTGGAAGCCCTGGTT
1 TTGACCCTGGAAGCCCTGGTT
168475 TTGACCCTGGAAGCCCTGGTT
1 TTGACCCTGGAAGCCCTGGTT
168496 CTGGTTTTGG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.14, C:0.29, G:0.29, T:0.29
Consensus pattern (21 bp):
TTGACCCTGGAAGCCCTGGTT
Left flanking sequence: Indices 167954 -- 168453
GGCTCCGGAAGGCCCTCGTCGCCGTGCTCAAACGAGAACTTCAGGTCGCGAGCCTCGGGGTACAA
ACCCGCGTTCGGGTTGCGGGAGGCGTGCTGCGGGGTGTTGATGTCGTGGCGTTTGAGCATCAGCA
ACCGGTTCGGGTCCAGGTCCGACGACTCGTCCAGCAGCTCCAGCTCGTGGTACTCGACGAAGTTG
GGCGACGAGTCTGCGGCGGCGACGGCGGCGGCGGTGGTGGGGGTGAACGGGGTCAGGAACGAGTC
CTCGGGCACCGGGGTGGCGCGGTCGTGCTCGAAGGGGGCCTTGGACAGCGCCAGCGGGATCGGCG
GCGGGTTGGAGGGCTTTTGCGAGAGCGAGCGCGGCTGGTTTTCCGAGAAGCTCTGTTGGGACTGA
AGGGGTTGGTTCTGGCTCTGAAGGGGCTGGTTCTGGTTGAAGCCCTGGTTTTGGCCTTGTTGACC
TTGGAAACCCTGGTTCTGGCCCTGGAAGCCCTGGTTTTGGCCTTG
Right flanking sequence: Indices 168496 -- 168995
CTGGTTTTGGAAACCCTGGTTTTGGCCCTGTTGACCCTGGAAACCCTGGTTCTGGCCCTGCTGGC
CCTTAAAACCTTCCCCGTGCTCCACGTCGTCCAACCCGTCCTTCTCGTGGCCCTCCACGGGCGTC
CCAAAAGCACTGCTATCGCCAAACTCCCCACCCACCTGGGGCGTCGCAGGCAACAGGTTGTTGTT
GCCAGGCACCAACGGAGCCTGCAGCGCCAGCATGGGCGGAAGCGGCTTGCCTCGGCCCGGGATCA
ACTCCGGCTGGCTGAACGGGTCGTTCTCCTGCTTGGCCAGCTCTCTCTCGGGGTGTCTGTCGTCG
TCGTGGCCATGGTGGGCCGCGTAGCCAGCAGCTCCAACAGCGCCGGCCCCCGCAGCCACCGCGCC
TGCGGCAGCCCCGTGGCCTCGGCCCTTGCGCAGGGTCAGACGAGAAGGACCACCGGTCAGCGCCG
TCACCAACAGCGCGTCCTCAGGGATCGCCCCCACGTCGCCGGTGT
Found at i:168486 original size:72 final size:72
Alignment explanation
Indices: 168403--168555 Score: 216
Period size: 72 Copynumber: 2.1 Consensus size: 72
168393 TTTGGCCTTG
* * * *
168403 TTGACCTTGGAAACCCTGGTTCTGGCCCTGGAAGCCCTGGTTTTGGCCTTGTTGACCCTGGAAGC
1 TTGACCCTGGAAACCCTGGTTCTGGCCCTGGAAACCCTGGTTTTGGCCCTGTTGACCCTGGAAAC
168468 CCTGGTT
66 CCTGGTT
* ***
168475 TTGACCCTGGAAGCCCTGGTTCTGGTTTTGGAAACCCTGGTTTTGGCCCTGTTGACCCTGGAAAC
1 TTGACCCTGGAAACCCTGGTTCTGGCCCTGGAAACCCTGGTTTTGGCCCTGTTGACCCTGGAAAC
168540 CCTGGTT
66 CCTGGTT
* *
168547 CTGGCCCTG
1 TTGACCCTG
168556 CTGGCCCTTA
Statistics
Matches: 71, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
72 71 1.00
ACGTcount: A:0.12, C:0.28, G:0.29, T:0.31
Consensus pattern (72 bp):
TTGACCCTGGAAACCCTGGTTCTGGCCCTGGAAACCCTGGTTTTGGCCCTGTTGACCCTGGAAAC
CCTGGTT
Left flanking sequence: Indices 167903 -- 168402
GCCTTCAGCCCGCGCTTGGCCTGGGGCGACCCCAACTCGTGCTCGATGTTGGGCTCCGGAAGGCC
CTCGTCGCCGTGCTCAAACGAGAACTTCAGGTCGCGAGCCTCGGGGTACAAACCCGCGTTCGGGT
TGCGGGAGGCGTGCTGCGGGGTGTTGATGTCGTGGCGTTTGAGCATCAGCAACCGGTTCGGGTCC
AGGTCCGACGACTCGTCCAGCAGCTCCAGCTCGTGGTACTCGACGAAGTTGGGCGACGAGTCTGC
GGCGGCGACGGCGGCGGCGGTGGTGGGGGTGAACGGGGTCAGGAACGAGTCCTCGGGCACCGGGG
TGGCGCGGTCGTGCTCGAAGGGGGCCTTGGACAGCGCCAGCGGGATCGGCGGCGGGTTGGAGGGC
TTTTGCGAGAGCGAGCGCGGCTGGTTTTCCGAGAAGCTCTGTTGGGACTGAAGGGGTTGGTTCTG
GCTCTGAAGGGGCTGGTTCTGGTTGAAGCCCTGGTTTTGGCCTTG
Right flanking sequence: Indices 168556 -- 169055
CTGGCCCTTAAAACCTTCCCCGTGCTCCACGTCGTCCAACCCGTCCTTCTCGTGGCCCTCCACGG
GCGTCCCAAAAGCACTGCTATCGCCAAACTCCCCACCCACCTGGGGCGTCGCAGGCAACAGGTTG
TTGTTGCCAGGCACCAACGGAGCCTGCAGCGCCAGCATGGGCGGAAGCGGCTTGCCTCGGCCCGG
GATCAACTCCGGCTGGCTGAACGGGTCGTTCTCCTGCTTGGCCAGCTCTCTCTCGGGGTGTCTGT
CGTCGTCGTGGCCATGGTGGGCCGCGTAGCCAGCAGCTCCAACAGCGCCGGCCCCCGCAGCCACC
GCGCCTGCGGCAGCCCCGTGGCCTCGGCCCTTGCGCAGGGTCAGACGAGAAGGACCACCGGTCAG
CGCCGTCACCAACAGCGCGTCCTCAGGGATCGCCCCCACGTCGCCGGTGTGCTTCTTGTCCTTCT
TCTTGCGGCCAAAGATCAGCCCCACCTTCAGCTTCAACAGCTTTT
Found at i:168492 original size:30 final size:30
Alignment explanation
Indices: 168427--168493 Score: 84
Period size: 30 Copynumber: 2.2 Consensus size: 30
168417 CCTGGTTCTG
* *
168427 GCCCTGGAAGCCCTGGTTTTGGCCTTGTTGA
1 GCCCTGGAAGCCCTGGTTTTGACCCTG-TGA
168458 -CCCTGGAAGCCCTGGTTTTGACCCTG-GAA
1 GCCCTGGAAGCCCTGGTTTTGACCCTGTG-A
168487 GCCCTGG
1 GCCCTGG
168494 TTCTGGTTTT
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
28 1 0.03
29 1 0.03
30 30 0.94
ACGTcount: A:0.12, C:0.30, G:0.31, T:0.27
Consensus pattern (30 bp):
GCCCTGGAAGCCCTGGTTTTGACCCTGTGA
Left flanking sequence: Indices 167927 -- 168426
GGCGACCCCAACTCGTGCTCGATGTTGGGCTCCGGAAGGCCCTCGTCGCCGTGCTCAAACGAGAA
CTTCAGGTCGCGAGCCTCGGGGTACAAACCCGCGTTCGGGTTGCGGGAGGCGTGCTGCGGGGTGT
TGATGTCGTGGCGTTTGAGCATCAGCAACCGGTTCGGGTCCAGGTCCGACGACTCGTCCAGCAGC
TCCAGCTCGTGGTACTCGACGAAGTTGGGCGACGAGTCTGCGGCGGCGACGGCGGCGGCGGTGGT
GGGGGTGAACGGGGTCAGGAACGAGTCCTCGGGCACCGGGGTGGCGCGGTCGTGCTCGAAGGGGG
CCTTGGACAGCGCCAGCGGGATCGGCGGCGGGTTGGAGGGCTTTTGCGAGAGCGAGCGCGGCTGG
TTTTCCGAGAAGCTCTGTTGGGACTGAAGGGGTTGGTTCTGGCTCTGAAGGGGCTGGTTCTGGTT
GAAGCCCTGGTTTTGGCCTTGTTGACCTTGGAAACCCTGGTTCTG
Right flanking sequence: Indices 168494 -- 168993
TTCTGGTTTTGGAAACCCTGGTTTTGGCCCTGTTGACCCTGGAAACCCTGGTTCTGGCCCTGCTG
GCCCTTAAAACCTTCCCCGTGCTCCACGTCGTCCAACCCGTCCTTCTCGTGGCCCTCCACGGGCG
TCCCAAAAGCACTGCTATCGCCAAACTCCCCACCCACCTGGGGCGTCGCAGGCAACAGGTTGTTG
TTGCCAGGCACCAACGGAGCCTGCAGCGCCAGCATGGGCGGAAGCGGCTTGCCTCGGCCCGGGAT
CAACTCCGGCTGGCTGAACGGGTCGTTCTCCTGCTTGGCCAGCTCTCTCTCGGGGTGTCTGTCGT
CGTCGTGGCCATGGTGGGCCGCGTAGCCAGCAGCTCCAACAGCGCCGGCCCCCGCAGCCACCGCG
CCTGCGGCAGCCCCGTGGCCTCGGCCCTTGCGCAGGGTCAGACGAGAAGGACCACCGGTCAGCGC
CGTCACCAACAGCGCGTCCTCAGGGATCGCCCCCACGTCGCCGGT
Found at i:168512 original size:51 final size:51
Alignment explanation
Indices: 168382--168514 Score: 140
Period size: 51 Copynumber: 2.6 Consensus size: 51
168372 GGTTCTGGTT
* *** * *
168382 GAAGCCCTGGTTTTGGCCTTGTTGACCTTGGAAACCCTGGTTCTGGCCCTG
1 GAAGCCCTGGTTCTGGCCTTGGAAACCCTGGAAACCCTGGTTCTGACCCTG
* *** * *
168433 GAAGCCCTGGTTTTGGCCTTGTTGACCCTGGAAGCCCTGGTTTTGACCCTG
1 GAAGCCCTGGTTCTGGCCTTGGAAACCCTGGAAACCCTGGTTCTGACCCTG
**
168484 GAAGCCCTGGTTCTGGTTTTGGAAACCCTGG
1 GAAGCCCTGGTTCTGGCCTTGGAAACCCTGG
168515 TTTTGGCCCT
Statistics
Matches: 72, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
51 72 1.00
ACGTcount: A:0.13, C:0.26, G:0.30, T:0.31
Consensus pattern (51 bp):
GAAGCCCTGGTTCTGGCCTTGGAAACCCTGGAAACCCTGGTTCTGACCCTG
Left flanking sequence: Indices 167882 -- 168381
GACGGGGGCGGCGGAGGAGCCGCCTTCAGCCCGCGCTTGGCCTGGGGCGACCCCAACTCGTGCTC
GATGTTGGGCTCCGGAAGGCCCTCGTCGCCGTGCTCAAACGAGAACTTCAGGTCGCGAGCCTCGG
GGTACAAACCCGCGTTCGGGTTGCGGGAGGCGTGCTGCGGGGTGTTGATGTCGTGGCGTTTGAGC
ATCAGCAACCGGTTCGGGTCCAGGTCCGACGACTCGTCCAGCAGCTCCAGCTCGTGGTACTCGAC
GAAGTTGGGCGACGAGTCTGCGGCGGCGACGGCGGCGGCGGTGGTGGGGGTGAACGGGGTCAGGA
ACGAGTCCTCGGGCACCGGGGTGGCGCGGTCGTGCTCGAAGGGGGCCTTGGACAGCGCCAGCGGG
ATCGGCGGCGGGTTGGAGGGCTTTTGCGAGAGCGAGCGCGGCTGGTTTTCCGAGAAGCTCTGTTG
GGACTGAAGGGGTTGGTTCTGGCTCTGAAGGGGCTGGTTCTGGTT
Right flanking sequence: Indices 168515 -- 169014
TTTTGGCCCTGTTGACCCTGGAAACCCTGGTTCTGGCCCTGCTGGCCCTTAAAACCTTCCCCGTG
CTCCACGTCGTCCAACCCGTCCTTCTCGTGGCCCTCCACGGGCGTCCCAAAAGCACTGCTATCGC
CAAACTCCCCACCCACCTGGGGCGTCGCAGGCAACAGGTTGTTGTTGCCAGGCACCAACGGAGCC
TGCAGCGCCAGCATGGGCGGAAGCGGCTTGCCTCGGCCCGGGATCAACTCCGGCTGGCTGAACGG
GTCGTTCTCCTGCTTGGCCAGCTCTCTCTCGGGGTGTCTGTCGTCGTCGTGGCCATGGTGGGCCG
CGTAGCCAGCAGCTCCAACAGCGCCGGCCCCCGCAGCCACCGCGCCTGCGGCAGCCCCGTGGCCT
CGGCCCTTGCGCAGGGTCAGACGAGAAGGACCACCGGTCAGCGCCGTCACCAACAGCGCGTCCTC
AGGGATCGCCCCCACGTCGCCGGTGTGCTTCTTGTCCTTCTTCTT
Found at i:168570 original size:30 final size:30
Alignment explanation
Indices: 168506--168570 Score: 85
Period size: 30 Copynumber: 2.2 Consensus size: 30
168496 CTGGTTTTGG
* * *
168506 AAACCCTGGTTTTGGCCCTGTTGACCCTGG
1 AAACCCTGGTTCTGGCCCTGCTGACCCTGA
* *
168536 AAACCCTGGTTCTGGCCCTGCTGGCCCTTA
1 AAACCCTGGTTCTGGCCCTGCTGACCCTGA
168566 AAACC
1 AAACC
168571 TTCCCCGTGC
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.17, C:0.34, G:0.23, T:0.26
Consensus pattern (30 bp):
AAACCCTGGTTCTGGCCCTGCTGACCCTGA
Left flanking sequence: Indices 168006 -- 168505
CCTCGGGGTACAAACCCGCGTTCGGGTTGCGGGAGGCGTGCTGCGGGGTGTTGATGTCGTGGCGT
TTGAGCATCAGCAACCGGTTCGGGTCCAGGTCCGACGACTCGTCCAGCAGCTCCAGCTCGTGGTA
CTCGACGAAGTTGGGCGACGAGTCTGCGGCGGCGACGGCGGCGGCGGTGGTGGGGGTGAACGGGG
TCAGGAACGAGTCCTCGGGCACCGGGGTGGCGCGGTCGTGCTCGAAGGGGGCCTTGGACAGCGCC
AGCGGGATCGGCGGCGGGTTGGAGGGCTTTTGCGAGAGCGAGCGCGGCTGGTTTTCCGAGAAGCT
CTGTTGGGACTGAAGGGGTTGGTTCTGGCTCTGAAGGGGCTGGTTCTGGTTGAAGCCCTGGTTTT
GGCCTTGTTGACCTTGGAAACCCTGGTTCTGGCCCTGGAAGCCCTGGTTTTGGCCTTGTTGACCC
TGGAAGCCCTGGTTTTGACCCTGGAAGCCCTGGTTCTGGTTTTGG
Right flanking sequence: Indices 168571 -- 169070
TTCCCCGTGCTCCACGTCGTCCAACCCGTCCTTCTCGTGGCCCTCCACGGGCGTCCCAAAAGCAC
TGCTATCGCCAAACTCCCCACCCACCTGGGGCGTCGCAGGCAACAGGTTGTTGTTGCCAGGCACC
AACGGAGCCTGCAGCGCCAGCATGGGCGGAAGCGGCTTGCCTCGGCCCGGGATCAACTCCGGCTG
GCTGAACGGGTCGTTCTCCTGCTTGGCCAGCTCTCTCTCGGGGTGTCTGTCGTCGTCGTGGCCAT
GGTGGGCCGCGTAGCCAGCAGCTCCAACAGCGCCGGCCCCCGCAGCCACCGCGCCTGCGGCAGCC
CCGTGGCCTCGGCCCTTGCGCAGGGTCAGACGAGAAGGACCACCGGTCAGCGCCGTCACCAACAG
CGCGTCCTCAGGGATCGCCCCCACGTCGCCGGTGTGCTTCTTGTCCTTCTTCTTGCGGCCAAAGA
TCAGCCCCACCTTCAGCTTCAACAGCTTTTTGTCCTTCTCCTTGC
Found at i:170784 original size:14 final size:15
Alignment explanation
Indices: 170759--170821 Score: 85
Period size: 14 Copynumber: 4.3 Consensus size: 15
170749 TGCAAAAGTC
*
170759 GAGCTGGTCTAATTG
1 GAGCTGGTCTAATAG
170774 GAGCT-GTCTAATAG
1 GAGCTGGTCTAATAG
170788 GAGCT-GTCTAATAG
1 GAGCTGGTCTAATAG
* *
170802 GAGCTGGTATAATTG
1 GAGCTGGTCTAATAG
170817 GAGCT
1 GAGCT
170822 TTTATCACCG
Statistics
Matches: 44, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
14 27 0.61
15 17 0.39
ACGTcount: A:0.25, C:0.13, G:0.32, T:0.30
Consensus pattern (15 bp):
GAGCTGGTCTAATAG
Left flanking sequence: Indices 170259 -- 170758
ATGGTGCTTTCGGGGTTCCCGCCCGGTTCCGGGTGGCTGGGCGAGTCGAGCCGGCACCGGTGGGT
GCGCCGGGCTCGCAACGCAAAGTGTCGTGGGTCGATCAGCAACCAAGACAATGGAGGGTGGCGGA
GGAAGAGGGGTTGGGTGGAGGGGTTGGACGGAGGTAGTAGAGGGGTTGGACAGTGGGGTGGATAC
GCGGGTAGGCGAAGCGGGGTAGAGAGCGAGGGTTTGGTGCTGAGTGTAGAAGAGACCTTGGTTGC
AGTGGTGCAGTTTTACGAGACATTGTAGCGTTGGTTGTCTGGTGTGCCAACAGGTGACCGGCAAA
TCGTGTTATCCAGTGGTGGTAGGGTTTATGTGAGTTTGGGTTGGTTGACGGCCCAAATGACGCTG
TCTGATGGTTCCGACGTTTAGCACCATTAGACCGACTAACGAGCCTACTGACGAAAATAGCCAGG
TATACGATGCTACCGAGAAGGGACAAAAGATCGCCTGCAAAAGTC
Right flanking sequence: Indices 170822 -- 171321
TTTATCACCGAACTACTATGCCCACTTGCCTTGCCCTACACCTTTTTCCAACAGACTGCTTGTCC
ACCCTTATTACCATACCATCCATTAATTAATTACAAGATCACTCCTTAGCACTCAAGCTGTTCTC
CTCGCTCGTCTCGTTCACGGGAGCAGGCACCCCAGCGCCAGCACTAGAGGCAACCGCCTGGAGCT
TAGCCACCCGGGCCGTGGTCAGCCGCAACGGCTCGATCACGTACGCAGTCAGGTCGGAGTCCTTG
TACTGCTTCATCTCCCCGGACTCCTCGTCGTAGTAGGTAAACTCGCCGATCTGGGCCAAGTCGGT
GCCCATAAGCTCCTCGTCCTCGTGGAGACGGATCCGCAAGAAGGGGATCCGGTCCATGGCTAGGA
GCAAAATCAGGGTCACCACGAACGACCACGCGGCCACAGACACCGAGGCCGCCAACTGGTAGCCC
AACTGCTTCCAGTGGTGGTTCATCCACCCACCAAGAATACGAGCC
Found at i:170814 original size:29 final size:29
Alignment explanation
Indices: 170759--170821 Score: 83
Period size: 29 Copynumber: 2.2 Consensus size: 29
170749 TGCAAAAGTC
* *
170759 GAGCTGGTCTAATTGGAGCTGTCTAATAG
1 GAGCTGGTCTAATAGGAGCTGTATAATAG
*
170788 GAGCT-GTCTAATAGGAGCTGGTATAATTG
1 GAGCTGGTCTAATAGGAGCT-GTATAATAG
170817 GAGCT
1 GAGCT
170822 TTTATCACCG
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
28 13 0.43
29 17 0.57
ACGTcount: A:0.25, C:0.13, G:0.32, T:0.30
Consensus pattern (29 bp):
GAGCTGGTCTAATAGGAGCTGTATAATAG
Left flanking sequence: Indices 170259 -- 170758
ATGGTGCTTTCGGGGTTCCCGCCCGGTTCCGGGTGGCTGGGCGAGTCGAGCCGGCACCGGTGGGT
GCGCCGGGCTCGCAACGCAAAGTGTCGTGGGTCGATCAGCAACCAAGACAATGGAGGGTGGCGGA
GGAAGAGGGGTTGGGTGGAGGGGTTGGACGGAGGTAGTAGAGGGGTTGGACAGTGGGGTGGATAC
GCGGGTAGGCGAAGCGGGGTAGAGAGCGAGGGTTTGGTGCTGAGTGTAGAAGAGACCTTGGTTGC
AGTGGTGCAGTTTTACGAGACATTGTAGCGTTGGTTGTCTGGTGTGCCAACAGGTGACCGGCAAA
TCGTGTTATCCAGTGGTGGTAGGGTTTATGTGAGTTTGGGTTGGTTGACGGCCCAAATGACGCTG
TCTGATGGTTCCGACGTTTAGCACCATTAGACCGACTAACGAGCCTACTGACGAAAATAGCCAGG
TATACGATGCTACCGAGAAGGGACAAAAGATCGCCTGCAAAAGTC
Right flanking sequence: Indices 170822 -- 171321
TTTATCACCGAACTACTATGCCCACTTGCCTTGCCCTACACCTTTTTCCAACAGACTGCTTGTCC
ACCCTTATTACCATACCATCCATTAATTAATTACAAGATCACTCCTTAGCACTCAAGCTGTTCTC
CTCGCTCGTCTCGTTCACGGGAGCAGGCACCCCAGCGCCAGCACTAGAGGCAACCGCCTGGAGCT
TAGCCACCCGGGCCGTGGTCAGCCGCAACGGCTCGATCACGTACGCAGTCAGGTCGGAGTCCTTG
TACTGCTTCATCTCCCCGGACTCCTCGTCGTAGTAGGTAAACTCGCCGATCTGGGCCAAGTCGGT
GCCCATAAGCTCCTCGTCCTCGTGGAGACGGATCCGCAAGAAGGGGATCCGGTCCATGGCTAGGA
GCAAAATCAGGGTCACCACGAACGACCACGCGGCCACAGACACCGAGGCCGCCAACTGGTAGCCC
AACTGCTTCCAGTGGTGGTTCATCCACCCACCAAGAATACGAGCC
Found at i:173725 original size:15 final size:16
Alignment explanation
Indices: 173705--173751 Score: 60
Period size: 19 Copynumber: 2.8 Consensus size: 16
173695 TGTCTTGCTT
173705 GTTGCTCTCAAGC-CC
1 GTTGCTCTCAAGCGCC
173720 GTTGCTCTCAAGCTCTGCC
1 GTTGCTCTCAAG--C-GCC
173739 GTTGCTCTCAAGC
1 GTTGCTCTCAAGC
173752 TCTGCCGTTG
Statistics
Matches: 28, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
15 12 0.43
17 2 0.07
19 14 0.50
ACGTcount: A:0.13, C:0.36, G:0.21, T:0.30
Consensus pattern (16 bp):
GTTGCTCTCAAGCGCC
Left flanking sequence: Indices 173205 -- 173704
TTGCTTTTGACTGTCGGCCACGCAGCCAGCGACCCGCAAATCCGCCTGGCTGCTTGGTGAAGTTT
TGACGAAAATGCCGCCACCAGGCTAAGCGACTGTAGCGACGACACGACCACTGCCGTCACACGCA
GAGAACCGTCGGTGCGTTAATGTGTCCTGCTTGGTAGTAGGGTTGCGGGTCTCTTTGCGTCATTG
TCACGGCAACGATCAACAATACTTGATCTGGCAGCGACATGCAAAGGCAGTTTAGGCGAGGGACA
GTGTCTTGCGACTAAGTATAGTTAAAGTTAGAGCAGCGGCAAGGAGCCACAGTATGGCACACGAA
GCTTAACTGAGTCGGAGATGGATATTGGAGGGGTTGCAACCAGACAGAGAATCAGAGCTAGGAAC
AGTGACGGGAGACATTTTAATGGCAACAATCATGAGACAGGTTAACATTTAGGAGACAGGTTGCG
GCCTAGCATTCGAAGTAGCTAGCGTTTGCTCCCACTGTCTTGCTT
Right flanking sequence: Indices 173752 -- 174251
TCTGCCGTTGCCACTTATGACCCCTCGCTCCTGTTGCTGTTGGTTTAACCTTACATTACCTACAC
TCTAAGCTTAACTCTAGTCGTGCTGAAGGTGCACTCGAGTATGAGTGGTTGCCCCATGACGTAAC
CACGGCCTTTGTGTCAAACCTAGTTTGCCGTCGGTTTAGTGGCCGCGGGACAAGGCCACCAGGGC
TAAAGCCACCGCTGATCATGTAGCCCCACGCGAGTGATACATCATGCCGGTCTAGCGACATGCAG
AGGGTGTCGAGATCCATTCGCCGTACCCTCTCGCCTCGACCATCCGCATTGGGTGGTACCTACGC
ATAGGTGGCTTAGACACCATAGGACCTTAACCAACAATACGATGCGGTATGGGGCACAGTGCGCT
GAGCTCGAGGAGCCCGGTCCTTTGCTCTGCTTGTGGCATTCCACCCGACCGCATTCCGCATTGTG
ACTGTGTTCAGTGCGGCCATCACAAAGCAGCTCGTCAATGGGGAT
Found at i:173742 original size:19 final size:19
Alignment explanation
Indices: 173718--173762 Score: 90
Period size: 19 Copynumber: 2.4 Consensus size: 19
173708 GCTCTCAAGC
173718 CCGTTGCTCTCAAGCTCTG
1 CCGTTGCTCTCAAGCTCTG
173737 CCGTTGCTCTCAAGCTCTG
1 CCGTTGCTCTCAAGCTCTG
173756 CCGTTGC
1 CCGTTGC
173763 CACTTATGAC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 26 1.00
ACGTcount: A:0.09, C:0.38, G:0.22, T:0.31
Consensus pattern (19 bp):
CCGTTGCTCTCAAGCTCTG
Left flanking sequence: Indices 173218 -- 173717
TCGGCCACGCAGCCAGCGACCCGCAAATCCGCCTGGCTGCTTGGTGAAGTTTTGACGAAAATGCC
GCCACCAGGCTAAGCGACTGTAGCGACGACACGACCACTGCCGTCACACGCAGAGAACCGTCGGT
GCGTTAATGTGTCCTGCTTGGTAGTAGGGTTGCGGGTCTCTTTGCGTCATTGTCACGGCAACGAT
CAACAATACTTGATCTGGCAGCGACATGCAAAGGCAGTTTAGGCGAGGGACAGTGTCTTGCGACT
AAGTATAGTTAAAGTTAGAGCAGCGGCAAGGAGCCACAGTATGGCACACGAAGCTTAACTGAGTC
GGAGATGGATATTGGAGGGGTTGCAACCAGACAGAGAATCAGAGCTAGGAACAGTGACGGGAGAC
ATTTTAATGGCAACAATCATGAGACAGGTTAACATTTAGGAGACAGGTTGCGGCCTAGCATTCGA
AGTAGCTAGCGTTTGCTCCCACTGTCTTGCTTGTTGCTCTCAAGC
Right flanking sequence: Indices 173763 -- 174262
CACTTATGACCCCTCGCTCCTGTTGCTGTTGGTTTAACCTTACATTACCTACACTCTAAGCTTAA
CTCTAGTCGTGCTGAAGGTGCACTCGAGTATGAGTGGTTGCCCCATGACGTAACCACGGCCTTTG
TGTCAAACCTAGTTTGCCGTCGGTTTAGTGGCCGCGGGACAAGGCCACCAGGGCTAAAGCCACCG
CTGATCATGTAGCCCCACGCGAGTGATACATCATGCCGGTCTAGCGACATGCAGAGGGTGTCGAG
ATCCATTCGCCGTACCCTCTCGCCTCGACCATCCGCATTGGGTGGTACCTACGCATAGGTGGCTT
AGACACCATAGGACCTTAACCAACAATACGATGCGGTATGGGGCACAGTGCGCTGAGCTCGAGGA
GCCCGGTCCTTTGCTCTGCTTGTGGCATTCCACCCGACCGCATTCCGCATTGTGACTGTGTTCAG
TGCGGCCATCACAAAGCAGCTCGTCAATGGGGATGTAACTTTGGC
Found at i:174465 original size:16 final size:16
Alignment explanation
Indices: 174446--174485 Score: 55
Period size: 16 Copynumber: 2.6 Consensus size: 16
174436 ACTTTTACAC
174446 TCTACCACCCCACCAG
1 TCTACCACCCCACCAG
* *
174462 TCTACTACTCCACCAG
1 TCTACCACCCCACCAG
174478 TCT-CCACC
1 TCTACCACC
174486 ACTCTACCAC
Statistics
Matches: 20, Mismatches: 4, Indels: 1
0.80 0.16 0.04
Matches are distributed among these distances:
15 3 0.15
16 17 0.85
ACGTcount: A:0.23, C:0.53, G:0.05, T:0.20
Consensus pattern (16 bp):
TCTACCACCCCACCAG
Left flanking sequence: Indices 173946 -- 174445
CTAAAGCCACCGCTGATCATGTAGCCCCACGCGAGTGATACATCATGCCGGTCTAGCGACATGCA
GAGGGTGTCGAGATCCATTCGCCGTACCCTCTCGCCTCGACCATCCGCATTGGGTGGTACCTACG
CATAGGTGGCTTAGACACCATAGGACCTTAACCAACAATACGATGCGGTATGGGGCACAGTGCGC
TGAGCTCGAGGAGCCCGGTCCTTTGCTCTGCTTGTGGCATTCCACCCGACCGCATTCCGCATTGT
GACTGTGTTCAGTGCGGCCATCACAAAGCAGCTCGTCAATGGGGATGTAACTTTGGCACTGAAAC
GGCGCAAAAGTTGTTGCGAGCGAGGCGTAGCGAGCCAGGTGGCGTGGTGGCAAGGCTGTGTGCCA
TTTACACTGTCAGTCTGTTTCAGTATGAGCACGGAATGACACAACTGCTGCTTTGCGTCTCCAGC
CGAGACTGACACTTGCCTGGTCTAATACTGCGCCCACTTTTACAC
Right flanking sequence: Indices 174486 -- 174985
ACTCTACCACTCAACCCTTACCACCCTACCCTACCACTCACCCACCGCGACATTATCACATTTCC
GCTCCATTCTCCAGCATTCTCTCAACCACTCCACCAACTCCACCACGCTCCTCCACTGCGTGCCC
CACCCGCAAGCACCTCCTACACCACCCTATTGTTTGTCCCCCACATTCCCGGTATTATTGCCTTC
CCAATCGGGCAAACAATGGTCGTTCCACGACGGTGTTTCAATCAGTCGTCCCCGTGGCCCGCGAC
CGTCCCCCCACTTCTCCACCCCTCTTGGCCTCGCTCCCGTCTTCGTTCGCGTCGTGTCGTTTGTT
CACATTGTAGTTGCTATGCATGCTGTACGCCAAACCTTAACTCTCGCCTAGTTGCCCTTACCGAT
TTTGTCCTCTGTCGCCTGCACACCCACCGCCCTCGTAATAGACACCCTTACATGGTACTTGTACA
TGAACGTCTGCATAAAAACCGTTGGTTGCGGTTGTGGTACAGCAT
Found at i:175657 original size:13 final size:13
Alignment explanation
Indices: 175617--175671 Score: 58
Period size: 13 Copynumber: 4.3 Consensus size: 13
175607 TAGCTCTTCG
*
175617 TCCACTCACTCTC
1 TCCACTCACTCTT
*
175630 TCCA-TTACTCTT
1 TCCACTCACTCTT
*
175642 TCCACTCACGCTT
1 TCCACTCACTCTT
* *
175655 TCCACCCACTCTA
1 TCCACTCACTCTT
175668 TCCA
1 TCCA
175672 TTAGCTTCCC
Statistics
Matches: 34, Mismatches: 7, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
12 10 0.29
13 24 0.71
ACGTcount: A:0.18, C:0.47, G:0.02, T:0.33
Consensus pattern (13 bp):
TCCACTCACTCTT
Left flanking sequence: Indices 175117 -- 175616
CCCGACGCTCCACACAAAAGGCGGCGGCGTGGTCCCGTTCTGTAGCCTGCGCTGCCATCTCTGCA
CCATCTGCACCTGTGGCCACTGCGCTAGACAAGCATCGCAGTAGCACCGGGGGCACGGTGGGTGG
GCTACGGGGTGGTGGCGACGAGATTGCTACCGAGGCCCAAAGTGACGGGTCCCGACTTTGCAATG
AGGGATTTTTTGGCGGGATTCCGTCGCCCTTTCCCGAGCAATTGCGACAAATTTTCGCGATGAGC
TGGTGTAGTGGAAGGTGGTGGAGATGGTCGTCTGGTGCGATCGTGGAGAAGGCCATTGTTCTAGG
CACTGTGAGGCGCCGGTAAGCAATGTTCTGAGCTTGCTACGTAGCCTACCAGACGGTCATCACAG
ACCACTCTAGATAGTAAAATTACCCGAACTCTCCGCTCGCTCTCTACTTGCTCTCTACTAGCTCT
CTTCACCTAACGACTGGCTCTCTTCCACTCTCTGCTAGCTCTTCG
Right flanking sequence: Indices 175672 -- 176171
TTAGCTTCCCTTCCAACCACTCTCTTCTCTCCACTCACCCACAAACTCTTCCCAACCACTCCACT
CTTACTCAATTATGTATATTTAATAGTACATTATCAGCGCAAAGGCCGCCCAGACACCCGAACTC
TATCACCAACATTAGAGCACCCGTGCCACCCTCGCGCCCAGTGTTGGGTCGTAAAGGCAAATAAA
AAACATCAGTCAATGCAAATGGAACCACGGCGGCAGGTTATTTTTTTTTCTTTTTTGGTGCCCCC
GTAACCCCGAACCAAACTCGCTCCTCTACTTCTCCTCGTCCTTCTTGGCGTCGGCCGCAGGCTGC
TGGGGCGTGCCCAGCGCCGGCTGTTGCGGGGTGCCCAGCGGCTGCTGGGGCGTGCCCGACACCGG
CTGTTGAGGAGTGCCCAGCGCCGCCGCCTGGGGCTGCTGCGGCGCCTGCCCGTACAGGTAGCCGT
ACATCTGGGTGCCCTGGTTGTAGGCCAGGTAGTTCGGGGCCAGCG
Found at i:176019 original size:24 final size:24
Alignment explanation
Indices: 175991--176084 Score: 90
Period size: 24 Copynumber: 4.0 Consensus size: 24
175981 GTCGGCCGCA
175991 GGCTGCTGGGGCGTGCCCAGCGCC
1 GGCTGCTGGGGCGTGCCCAGCGCC
*
176015 GGCTGTTGCGGG-GTGCCCA--G-C
1 GGCTGCTG-GGGCGTGCCCAGCGCC
*
176036 GGCTGCTGGGGCGTGCCC-GACACC
1 GGCTGCTGGGGCGTGCCCAG-CGCC
* * *
176060 GGCTGTTGAGGAGTGCCCAGCGCC
1 GGCTGCTGGGGCGTGCCCAGCGCC
176084 G
1 G
176085 CCGCCTGGGG
Statistics
Matches: 56, Mismatches: 7, Indels: 14
0.73 0.09 0.18
Matches are distributed among these distances:
20 3 0.05
21 14 0.25
22 1 0.02
24 34 0.61
25 4 0.07
ACGTcount: A:0.07, C:0.33, G:0.45, T:0.15
Consensus pattern (24 bp):
GGCTGCTGGGGCGTGCCCAGCGCC
Left flanking sequence: Indices 175491 -- 175990
CAGACGGTCATCACAGACCACTCTAGATAGTAAAATTACCCGAACTCTCCGCTCGCTCTCTACTT
GCTCTCTACTAGCTCTCTTCACCTAACGACTGGCTCTCTTCCACTCTCTGCTAGCTCTTCGTCCA
CTCACTCTCTCCATTACTCTTTCCACTCACGCTTTCCACCCACTCTATCCATTAGCTTCCCTTCC
AACCACTCTCTTCTCTCCACTCACCCACAAACTCTTCCCAACCACTCCACTCTTACTCAATTATG
TATATTTAATAGTACATTATCAGCGCAAAGGCCGCCCAGACACCCGAACTCTATCACCAACATTA
GAGCACCCGTGCCACCCTCGCGCCCAGTGTTGGGTCGTAAAGGCAAATAAAAAACATCAGTCAAT
GCAAATGGAACCACGGCGGCAGGTTATTTTTTTTTCTTTTTTGGTGCCCCCGTAACCCCGAACCA
AACTCGCTCCTCTACTTCTCCTCGTCCTTCTTGGCGTCGGCCGCA
Right flanking sequence: Indices 176085 -- 176584
CCGCCTGGGGCTGCTGCGGCGCCTGCCCGTACAGGTAGCCGTACATCTGGGTGCCCTGGTTGTAG
GCCAGGTAGTTCGGGGCCAGCGACCCGGCGTACGGCTGCTGCTGGTAGTACAGCGCGTTCTGGTA
GTACGGCTGCTGCTGCGTCTGCTGCTGCCCGTACCCCTGGTACATCTTCATCGGGTCCGCCTGGG
TCTGCGCCGCGGGCTGCGACGGCAGCGCGTGCGACTGCGACCCGTTGGAGTACAGCGCGTACTCC
AGCAGCGACTGCGGCGCGGTGCCCTGGTAGAACAGCGCCTGCTGGGTGGGCGGGGTCAGCAGCGC
CGCCTTGACGGCACCGGCGGTGTTGGGGGTGACCCCGGTCTGGATCACCCGCTTGATGTCGCGCA
CAAACAACGGGTACAACAAGTCGACGATCCCCTCGCGCTGGGCCATGGCAAGCGCCCGCTCAAAC
GGAATCCACACCCCCTTCAAGTGCATCAGCCCGATCTTGACCACG
Found at i:176062 original size:45 final size:45
Alignment explanation
Indices: 175991--176081 Score: 139
Period size: 45 Copynumber: 2.0 Consensus size: 45
175981 GTCGGCCGCA
* * *
175991 GGCTGCTGGGGCGTGCCCAGCGCCGGCTGTTGCGGGGTGCCCAGC
1 GGCTGCTGGGGCGTGCCCAGCACCGGCTGTTGAGGAGTGCCCAGC
176036 GGCTGCTGGGGCGTGCCC-GACACCGGCTGTTGAGGAGTGCCCAGC
1 GGCTGCTGGGGCGTGCCCAG-CACCGGCTGTTGAGGAGTGCCCAGC
176081 G
1 G
176082 CCGCCGCCTG
Statistics
Matches: 42, Mismatches: 3, Indels: 2
0.89 0.06 0.04
Matches are distributed among these distances:
44 1 0.02
45 41 0.98
ACGTcount: A:0.08, C:0.32, G:0.45, T:0.15
Consensus pattern (45 bp):
GGCTGCTGGGGCGTGCCCAGCACCGGCTGTTGAGGAGTGCCCAGC
Left flanking sequence: Indices 175491 -- 175990
CAGACGGTCATCACAGACCACTCTAGATAGTAAAATTACCCGAACTCTCCGCTCGCTCTCTACTT
GCTCTCTACTAGCTCTCTTCACCTAACGACTGGCTCTCTTCCACTCTCTGCTAGCTCTTCGTCCA
CTCACTCTCTCCATTACTCTTTCCACTCACGCTTTCCACCCACTCTATCCATTAGCTTCCCTTCC
AACCACTCTCTTCTCTCCACTCACCCACAAACTCTTCCCAACCACTCCACTCTTACTCAATTATG
TATATTTAATAGTACATTATCAGCGCAAAGGCCGCCCAGACACCCGAACTCTATCACCAACATTA
GAGCACCCGTGCCACCCTCGCGCCCAGTGTTGGGTCGTAAAGGCAAATAAAAAACATCAGTCAAT
GCAAATGGAACCACGGCGGCAGGTTATTTTTTTTTCTTTTTTGGTGCCCCCGTAACCCCGAACCA
AACTCGCTCCTCTACTTCTCCTCGTCCTTCTTGGCGTCGGCCGCA
Right flanking sequence: Indices 176082 -- 176581
CCGCCGCCTGGGGCTGCTGCGGCGCCTGCCCGTACAGGTAGCCGTACATCTGGGTGCCCTGGTTG
TAGGCCAGGTAGTTCGGGGCCAGCGACCCGGCGTACGGCTGCTGCTGGTAGTACAGCGCGTTCTG
GTAGTACGGCTGCTGCTGCGTCTGCTGCTGCCCGTACCCCTGGTACATCTTCATCGGGTCCGCCT
GGGTCTGCGCCGCGGGCTGCGACGGCAGCGCGTGCGACTGCGACCCGTTGGAGTACAGCGCGTAC
TCCAGCAGCGACTGCGGCGCGGTGCCCTGGTAGAACAGCGCCTGCTGGGTGGGCGGGGTCAGCAG
CGCCGCCTTGACGGCACCGGCGGTGTTGGGGGTGACCCCGGTCTGGATCACCCGCTTGATGTCGC
GCACAAACAACGGGTACAACAAGTCGACGATCCCCTCGCGCTGGGCCATGGCAAGCGCCCGCTCA
AACGGAATCCACACCCCCTTCAAGTGCATCAGCCCGATCTTGACC
Done.