Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: scaffold92
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 120106
ACGTcount: A:0.24, C:0.26, G:0.25, T:0.24
Found at i:18734 original size:14 final size:14
Alignment explanation
Indices: 18712--18753 Score: 66
Period size: 14 Copynumber: 3.0 Consensus size: 14
18702 AATTCTTCAT
*
18712 GTCCGCTCCTCCGA
1 GTCCTCTCCTCCGA
*
18726 GTCCTCTCCTCTGA
1 GTCCTCTCCTCCGA
18740 GTCCTCTCCTCCGA
1 GTCCTCTCCTCCGA
18754 AGCATCCTTC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
14 25 1.00
ACGTcount: A:0.07, C:0.48, G:0.17, T:0.29
Consensus pattern (14 bp):
GTCCTCTCCTCCGA
Left flanking sequence: Indices 18212 -- 18711
GGGCCGCTCGTACCACAAGTTGTTCAACCCCCCCAAGAAGGACATGACCGATGACATCACCGGCG
AGCCCCTCGTGCAGCGTTCCGACGACAACGAGGCTGCGTTGACCAAGCGGTTGACCACCTACCAC
AAGCAGACCGAGCCCATTGTCGAGTACTACCGCAAGTCGGGCATCTGGTCCGGGATTGACGCGTC
CCAGAAGCCCACCAAGGTGTGGTCGGACATCCTCAAGTGCTTGGGCCAGCAGTAAGTCGCGCTGT
GCGTGGATATGTAGCTGACAATTGTACATATATTTATTATTGCCTATGATTATGGGGTTGTACCG
GTGTAATATATGCTCCGTAAGTGGCTAGCCCATCGTAGTTGCGTATTTCGTTTTTGTTGAGCTCG
CCATCTTGGGCTCTCTCGAGCTCTCGTGTTTCTCAAGAATTTCTTTCTCTCACAAGTTTGAAGAA
GTTCTCTCACAAGTTTTCTCGGCTTCTTCGAGCCCAATTCTTCAT
Right flanking sequence: Indices 18754 -- 19253
AGCATCCTTCTTTATGCTTTACTCCGCTTGGACGGGTGGTGGCCTGCGTCGTCCGCCCCACGCTT
GCGCGACTCGCGGTAGCAGGTGATGTGCATGATTCTGCGCGAGTCGTGCGGGTCGTTGGGCAGCC
GGATGGCGTCGGGCCAGATCCACTCGCCGGTATCGTCGAGGTACTTGGCCTTGATCACCTCGCGA
CAGATAATGCACCGGTTCTCCATGTTCGTAGAATCCTCGGGCACCACCACGTACCCCGGTCCGGG
CGGCAACTCGTCCACCTCCATGGGAGCCGCGTCGGCAGCCGCCGGCTTGTCGGTGGCGTACTCGA
GAAGCACCTCGTCGCGGAACTCGACCCACTCGTAGTCGTCGATGAACCAGTCTCGCAGCTGCACG
TTGAGCTGCTGCGCCTGCTTCGAGTTGATGCGGAAGTGCCAGTCCAAGTGCAACTGCTTGCGCCG
CTCGCCGTCGTCGTCGGTCTCAAACCGCTTGCCGCATTGGTTGCA
Found at i:49413 original size:9 final size:9
Alignment explanation
Indices: 49399--49425 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
49389 GACTTGGCGC
49399 AGGCCAAGG
1 AGGCCAAGG
49408 AGGCCAAGG
1 AGGCCAAGG
49417 AGGCCAAGG
1 AGGCCAAGG
49426 CAGCAGAGAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.33, C:0.22, G:0.44, T:0.00
Consensus pattern (9 bp):
AGGCCAAGG
Left flanking sequence: Indices 48899 -- 49398
TTTGCTGATTCTCGTCACCGACTCCGAGCTGCTGGTGAAGAACGCCGCTGACATTTTGGACCGGT
TGATCAAGGATATTGTCAGCGCCAAGGCCACCAACTACGTGCTGATCTTGCACCAGAACGAGCCC
GCCACCGACATCAAGCTGCACTTGGTCGACGCTGACGGCGTGGCCATCCAGATCAACCACCCCCA
GGACACCGAGAAGGCGTTCAGTCTCCCCAAGTTCATTCCGACGTTGCTTGAGCGGATGTACGTGT
TGGACCCGTACCTGAAGAAGTTCATGTTGCTGTGGCTCGAGTTGTTTGACGACATCCCGACCCTT
GAGTTGGTGCTGTTTTTGCCCAACTTTTTGGAGCCGCTCATCAAGTTCATGATGAACTCGGCCCC
GGCTGACGTGCGGATGGAGACCGAAAACGTGCTCAACATGTTCTTGCACGAGGTCCAGGCAATCT
CGCGGGCGAAATTGGACAAGCGGCGTCGGCACCGCGACTTGGCGC
Right flanking sequence: Indices 49426 -- 49925
CAGCAGAGAAAAAGTCCAAGGACGATGTGTCGTCACGCGACTCGGCAGATGACACCGCTGGCGAC
ACCCTGGTGGCGCTGATCGCGCTGACGCTGACCACGGTGATCCGTCCGCAGACCGAGGCCCTGGA
CGATGACGACGACGACACGTCGTTTGTGGCGGGACAGGACATCTACTTGGACTACGCGGCGATGA
TCGAGATCCTCTTGCCGTTCTTGCCGTTTGCAAATAGTAAGCGGACCGCGGTGGACACCCTGGGC
GAGCCCCACGAGATCACGGTGGTGATCCAGCAGACAGCGTTGACGTGGTTGCAGCTGATTCTCGC
CATCCTGCCGCTGGGGTTTGTCAACCTCTTACCCACATGCATTGAGATTGTCGTCAAGAACATTG
CGGCCACCGAGCACGACAAGGATTACGAGTTGCGCAACCAGTACCTCGAGCTCAACGAGGGGCTC
GAGCAGGTGGTGGTGCAGATGAAGGAGTGCTCGCCCGAGCTGCAA
Found at i:63667 original size:11 final size:11
Alignment explanation
Indices: 63651--63675 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
63641 TTCCCTGCTC
63651 AAAGACGTGGA
1 AAAGACGTGGA
63662 AAAGACGTGGA
1 AAAGACGTGGA
63673 AAA
1 AAA
63676 CACTGGGCGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.52, C:0.08, G:0.32, T:0.08
Consensus pattern (11 bp):
AAAGACGTGGA
Left flanking sequence: Indices 63151 -- 63650
GTCGAGCTAGTTATGGACTCTGAAAAAAAGGGGCATTCCCCTATGTAATTATACGGCATGAAATG
TGAGAAAGATTATTGTAGGTTGGATGACAGAGTGTTAAAGTAGATACGAGAAAGGAAATCCCGTC
TTTGTCCATCAGGTGATCGTTATTGTTACTTTATGTGGCGCTATTTTGACCTGCATACAGCCCCA
AGATCTAACCCCTGAAGTGTACCCCTGTCACCTGGCAATTCTCCTGAAACCAAACCTGACAGTTT
CAGGCATTGTTTACCTGTTCGTGGCCATCTCCTGCAAAAAGTAATACCCCAACACCCCACTTTTC
TCCCTATTGTTTGTAGTCCCACCTACGCGACGCGATCGAAAAATCTCCACGTATAGGTTGCAACC
AAAGCATGCGATTCCCCCAGTTATTGGTTGGGTCCCTTTTGGCTGGTGTCTTGGCACACGAAGAG
CCTGGTCCGCAACTGATTCCCAACCTTCTCCATGTTTCCCTGCTC
Right flanking sequence: Indices 63676 -- 64175
CACTGGGCGACGTCAGGTTCGACAACGGACGGCTCCTAGTGAAAAATGGTGCTATCTGGTCGAAA
CAAGCACTTACCGGCAGTGACAAAGAGTGGACGGCCGAGTTCATTTTCCGTTCGCTGGGTACGAG
CGCCGACTCGGCTAATGATTTGACTAATGGGTTGGCATTGTGGTTAACTACCGAAATGGAGTCGG
ACACTCTGAACTTCGGGGGTCCAGCTAAGTATGACGGGTTTCAGATCCTTCTTAATGCCGGCTCC
GACATCCGTGGCATTGCCGTCTACAACTCGGATGGCTTTTCGCAACTGGTGCCCCAGACTCGGTT
CCTGATCGGCGACTGCAAGTTCAACTATCTTGATCTGATGGTTCCGTTCACAATTCGGGTGCTGT
ACCTGGATGCGCAGAGTATTTTCAAGGTCCAGATCGACAACAATCTCTGTTTCCGGACCGATCAA
ATCCGGATCCCCCCCGGACAACAGTACAAGTTGGGTATGCTGGCC
Found at i:94740 original size:15 final size:16
Alignment explanation
Indices: 94720--94749 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
94710 CGTCGGACTC
94720 GTCGTCCACC-CCTCA
1 GTCGTCCACCACCTCA
94735 GTCGTCCACCACCTC
1 GTCGTCCACCACCTC
94750 CTCTTCGTCC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 10 0.71
16 4 0.29
ACGTcount: A:0.13, C:0.53, G:0.13, T:0.20
Consensus pattern (16 bp):
GTCGTCCACCACCTCA
Left flanking sequence: Indices 94220 -- 94719
AACCAGAAGCGTGACACTGGTTCCGATATCGGGGCTGACATTGCCAACGCGGTGATGGGCGCCAT
GTTCAAGCGTGACGACACGGCCGCTGGCGGCGATGGTGACGACACTGCTGAGGCTGCTGCCACCA
CTATTGCGTCTACCCTGACCGACCCCGCTATCATCGAGGCCACCGACTTGTTCTCGCTGCTTGTC
GGCACTGCTCCCGCTCCCTCTGCGGCCGAGCCCTCCTCTCTGGCTGGCGGCAACGTGTTGGACGA
CTTGTTCGGCGACGTTGTTGGGCCCAACCCTACCACCTCGGGCACCAACGGCTCTGCCGAGGCCA
CTGCCTCCACCGGCTCCGGTTCGCTCTTGGATGACTTGTTCGGTGACTTGTTTGACTCGTCTCCC
TCCAACTCCACCCTGACCCCTAAGGACACCACCGACTCCTCCTCGGACTCTGGCTCCGACAACTT
CTTTGGTGACCTTTTGGACCTGATCTTTGGCACCTCGTCGGACTC
Right flanking sequence: Indices 94750 -- 95249
CTCTTCGTCCGGCGGTTCGCTTATTGACGAGATTATTGGTCTTGTCGGTGACGTTCTCTCCTCGC
TCTTTGCTCACTCTGGTGACTGGATCTCCGAGTTGTTGGAGGACTTGTTCGGTGGCTCTTCCCTG
GGCACCCTGGCCTCTGGCGACTTTTCTTTCGGTTCGTTGATTGGCGGTATCTTTGAGCTGATCAT
CGACTCGTTGTTCGGTGGCCTGCTGCTGTCGGGTACTTCGCTGACCACTGCCAACTCTGTGTTCG
GCTCTAACGCCAAGAAGTGCTGCTGCTCGCCCAAGTTCAAGGCCAAGCGCAACCAGCAGAAGCGG
ATGCTCAAGAAGATTGTCCAGGCCAAGGTTTCTCACAACATGGCCAAGCGCGACGTCTTGGTGGC
GAAGCGTGACACCTTGGCGCGCCGCATGGTGGCTGACGCCTTGATGAAGAGAATGGCGGAGTTGT
AATAGACCTAATATCCATAGCATTTTGTACAATAATACAGTTAGA
Found at i:97360 original size:6 final size:6
Alignment explanation
Indices: 97349--97387 Score: 57
Period size: 6 Copynumber: 7.0 Consensus size: 6
97339 GTCCAACCTG
97349 AGCTCC AGCTCC AGCT-C --CTCC AGCTCC AGCTCC AGCTCC
1 AGCTCC AGCTCC AGCTCC AGCTCC AGCTCC AGCTCC AGCTCC
97388 TCCAGCGTGG
Statistics
Matches: 30, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
3 2 0.07
4 1 0.03
5 1 0.03
6 26 0.87
ACGTcount: A:0.15, C:0.51, G:0.15, T:0.18
Consensus pattern (6 bp):
AGCTCC
Left flanking sequence: Indices 96849 -- 97348
GGCACTTGCTAAACAATATTCACTTCCACCCGAACTTGTTTGCCCTTTTAGGAAGGTATCTCCAC
CCAGCGCTCACAACGTTACCCAATACGGTTCGAGTTTTTCTACCCAGTATGGGTAAAAGACATAA
GCCGTTATATATAGATGTAGGCGGTCCCCGGGGCCCAAAAAAACTTAGCTTCGTCCACTTACCTT
ATTCCGTCTAGTGCTGGTGTTCTCCGCTCGCTATGAGACTCAACAGCTTGACCTTGGTGACGATG
GCAGCCGTGGTGGCTGCCTCCGAGAAACGAGGGTTCCTTGACTCGCTTTTTGGCTCCTCGTCCGG
CGACCTGGCTCCGGCTGCTGCCCCCCAAGCTGCGGCGGTCGAGCCTGCGGCTGCCCCGGCGGCCG
CTCCCGCTGACGCCGCTGCCCCCGTCGACGCTGCTGCTGCTGCCGACCCGGTGGCCGTGGCTGCT
TCGAGCCTGTTGCTGCTGCTGCTGCTGCTGCTCTTGTCCAACCTG
Right flanking sequence: Indices 97388 -- 97887
TCCAGCGTGGTGCTCACCCTGATTCCCGCGTTGACCCTGCTGAAGCCCGCTCGTTCTACCGTGGC
TCCTGCCCTCTTTGGTGCTTCGTCTGACGAGCTCCCTCAAGATGCGGCTTTCGCTGCTGAGGATG
TTTCCTCCACTGCTGCTGCGTCCTCCGCGGCCGCTTCGTCTGCGCTTGAGTCCAGTGCGGCTGCT
TCTTCTGAGGCTGCTTCGTCGGCTGAGCCCTCTGCCACTGAGGCCTCCTCCACTAAGGGCTTCTT
GGAGGGGTTGTTTGCGGCGGACGAAACCGACACTGCTGCATCTTCGGGTGCCTCCTCCCTGGCGG
CTGCGTCGTCGCTGGCGGCCTCGCTGGCTGCCTCGTCTGCTGCTTCGTCGGCTGCTTCTTCCGCT
ACCTCGCTGGGTGTCTCTTCTTCTGAGGCCTCCTCCGAGCTGGCCTCTGCCTCCTCCTCCGCCGC
TGAGTCCTCTGCTTCCGACGAGGACGAGTACTGCGATGAGGAGTC
Found at i:97373 original size:21 final size:21
Alignment explanation
Indices: 97349--97393 Score: 90
Period size: 21 Copynumber: 2.1 Consensus size: 21
97339 GTCCAACCTG
97349 AGCTCCAGCTCCAGCTCCTCC
1 AGCTCCAGCTCCAGCTCCTCC
97370 AGCTCCAGCTCCAGCTCCTCC
1 AGCTCCAGCTCCAGCTCCTCC
97391 AGC
1 AGC
97394 GTGGTGCTCA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.16, C:0.51, G:0.16, T:0.18
Consensus pattern (21 bp):
AGCTCCAGCTCCAGCTCCTCC
Left flanking sequence: Indices 96849 -- 97348
GGCACTTGCTAAACAATATTCACTTCCACCCGAACTTGTTTGCCCTTTTAGGAAGGTATCTCCAC
CCAGCGCTCACAACGTTACCCAATACGGTTCGAGTTTTTCTACCCAGTATGGGTAAAAGACATAA
GCCGTTATATATAGATGTAGGCGGTCCCCGGGGCCCAAAAAAACTTAGCTTCGTCCACTTACCTT
ATTCCGTCTAGTGCTGGTGTTCTCCGCTCGCTATGAGACTCAACAGCTTGACCTTGGTGACGATG
GCAGCCGTGGTGGCTGCCTCCGAGAAACGAGGGTTCCTTGACTCGCTTTTTGGCTCCTCGTCCGG
CGACCTGGCTCCGGCTGCTGCCCCCCAAGCTGCGGCGGTCGAGCCTGCGGCTGCCCCGGCGGCCG
CTCCCGCTGACGCCGCTGCCCCCGTCGACGCTGCTGCTGCTGCCGACCCGGTGGCCGTGGCTGCT
TCGAGCCTGTTGCTGCTGCTGCTGCTGCTGCTCTTGTCCAACCTG
Right flanking sequence: Indices 97394 -- 97893
GTGGTGCTCACCCTGATTCCCGCGTTGACCCTGCTGAAGCCCGCTCGTTCTACCGTGGCTCCTGC
CCTCTTTGGTGCTTCGTCTGACGAGCTCCCTCAAGATGCGGCTTTCGCTGCTGAGGATGTTTCCT
CCACTGCTGCTGCGTCCTCCGCGGCCGCTTCGTCTGCGCTTGAGTCCAGTGCGGCTGCTTCTTCT
GAGGCTGCTTCGTCGGCTGAGCCCTCTGCCACTGAGGCCTCCTCCACTAAGGGCTTCTTGGAGGG
GTTGTTTGCGGCGGACGAAACCGACACTGCTGCATCTTCGGGTGCCTCCTCCCTGGCGGCTGCGT
CGTCGCTGGCGGCCTCGCTGGCTGCCTCGTCTGCTGCTTCGTCGGCTGCTTCTTCCGCTACCTCG
CTGGGTGTCTCTTCTTCTGAGGCCTCCTCCGAGCTGGCCTCTGCCTCCTCCTCCGCCGCTGAGTC
CTCTGCTTCCGACGAGGACGAGTACTGCGATGAGGAGTCGGGCTC
Found at i:97393 original size:15 final size:15
Alignment explanation
Indices: 97351--97381 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
97341 CCAACCTGAG
97351 CTCCAGCTCCAGCTC
1 CTCCAGCTCCAGCTC
97366 CTCCAGCTCCAGCTC
1 CTCCAGCTCCAGCTC
97381 C
1 C
97382 AGCTCCTCCA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.13, C:0.55, G:0.13, T:0.19
Consensus pattern (15 bp):
CTCCAGCTCCAGCTC
Left flanking sequence: Indices 96851 -- 97350
CACTTGCTAAACAATATTCACTTCCACCCGAACTTGTTTGCCCTTTTAGGAAGGTATCTCCACCC
AGCGCTCACAACGTTACCCAATACGGTTCGAGTTTTTCTACCCAGTATGGGTAAAAGACATAAGC
CGTTATATATAGATGTAGGCGGTCCCCGGGGCCCAAAAAAACTTAGCTTCGTCCACTTACCTTAT
TCCGTCTAGTGCTGGTGTTCTCCGCTCGCTATGAGACTCAACAGCTTGACCTTGGTGACGATGGC
AGCCGTGGTGGCTGCCTCCGAGAAACGAGGGTTCCTTGACTCGCTTTTTGGCTCCTCGTCCGGCG
ACCTGGCTCCGGCTGCTGCCCCCCAAGCTGCGGCGGTCGAGCCTGCGGCTGCCCCGGCGGCCGCT
CCCGCTGACGCCGCTGCCCCCGTCGACGCTGCTGCTGCTGCCGACCCGGTGGCCGTGGCTGCTTC
GAGCCTGTTGCTGCTGCTGCTGCTGCTGCTCTTGTCCAACCTGAG
Right flanking sequence: Indices 97382 -- 97881
AGCTCCTCCAGCGTGGTGCTCACCCTGATTCCCGCGTTGACCCTGCTGAAGCCCGCTCGTTCTAC
CGTGGCTCCTGCCCTCTTTGGTGCTTCGTCTGACGAGCTCCCTCAAGATGCGGCTTTCGCTGCTG
AGGATGTTTCCTCCACTGCTGCTGCGTCCTCCGCGGCCGCTTCGTCTGCGCTTGAGTCCAGTGCG
GCTGCTTCTTCTGAGGCTGCTTCGTCGGCTGAGCCCTCTGCCACTGAGGCCTCCTCCACTAAGGG
CTTCTTGGAGGGGTTGTTTGCGGCGGACGAAACCGACACTGCTGCATCTTCGGGTGCCTCCTCCC
TGGCGGCTGCGTCGTCGCTGGCGGCCTCGCTGGCTGCCTCGTCTGCTGCTTCGTCGGCTGCTTCT
TCCGCTACCTCGCTGGGTGTCTCTTCTTCTGAGGCCTCCTCCGAGCTGGCCTCTGCCTCCTCCTC
CGCCGCTGAGTCCTCTGCTTCCGACGAGGACGAGTACTGCGATGA
Found at i:98472 original size:12 final size:12
Alignment explanation
Indices: 98455--98491 Score: 65
Period size: 12 Copynumber: 3.1 Consensus size: 12
98445 CCGACGAGCC
98455 CAACCCTACCGG
1 CAACCCTACCGG
98467 CAACCCTACCGG
1 CAACCCTACCGG
*
98479 CAACCCCACCGG
1 CAACCCTACCGG
98491 C
1 C
98492 GGTCCCAAGC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 24 1.00
ACGTcount: A:0.24, C:0.54, G:0.16, T:0.05
Consensus pattern (12 bp):
CAACCCTACCGG
Left flanking sequence: Indices 97955 -- 98454
CTTTTCCCCACTACCCTGGCTCCTCTGTCCACCGACAACGAGACCGGGATCGTGGCCCCTGGCGA
AGGCAACTCGTCCGCTCCTGCTTCTTCGGGTGCTTCGTCGGCTGAATCTTCTGCCTCGGACGAGG
ACGAGTACTGCGAAGAGTCTGACGAGCCCACGGTGGCTCCCACCGAGATCCCCACCACCGGTATC
CCCACGCTTTTCCCCACTACCTCTGACACTGGGCTCGTGATGCCTACCTATGGTAACTCTTCTGA
CACGGGGCTTGTGATGCCCACTTTCGGCAACTCGCTGGTGGTGCCCACTGACACTCCGTCGCTGT
TGCTGCTGCCCTACACTAACTCTTCGCTGACGGTTTCCGACGACGACGAGTACTGTGAGGAGCTG
ACGGAGGAGGGGCCCACTGGAACCGATATCACTAATGGTGGTACCGCGGCCCCCACCGACGGCCC
GGCGTCGACTGACGACGAGGACGAGTGGTGCGAGACCGACGAGCC
Right flanking sequence: Indices 98492 -- 98991
GGTCCCAAGCCCACCTCCGATGGCGGCATTGTCGACCAGACTACCGACGACGAGGACGAGGACTG
CATCACCGACGAGCCCGAGCCCACTGGTGGCGTTAAGCCCACCGACGGGCCTGGCCCCAAGCCCA
CCGGCAACCCGCCTGTGGTTACTGACGACGAGGACGAGGACTGCGACCCCGTTACCCTCATCACT
ACTCATTACACTACCACCACCCAGACGATTATCTGCCAGAACGGCGGGTGCCAGCACCACGACGT
GGTTACCGTTATTACCACCGTGTGCCCTGAGCCCACTCCTGGCCAGCCGTTGCCCTGGGAGACCG
ATGAGGAGGACTGCCCTGACTACACTTTGCCTGGTCCTGGCCCCACTCCTGGTGGTGGCTCTGGC
TCCGGCTCCGGCTGGGGCTCTGGTTCCGGCGAGGAGGAAGAGTGCGACGACGTCACCGTGTACCC
GGCTCCCACTGGTGGGTCCGGCCTGGGTTCGCTGTGGGGTGGCTC
Found at i:111582 original size:12 final size:12
Alignment explanation
Indices: 111567--111598 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
111557 ATCATCGTTG
111567 TGATCGTCATCA
1 TGATCGTCATCA
*
111579 TGATCATCATCA
1 TGATCGTCATCA
111591 TGATCGTC
1 TGATCGTC
111599 GTCGTTATCG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.25, C:0.25, G:0.16, T:0.34
Consensus pattern (12 bp):
TGATCGTCATCA
Left flanking sequence: Indices 111067 -- 111566
CATTGTTTGCCTGGCTGGTTTCGCTGTTTCTGTCCGAGCTGTCTCCAGAGCCCCCATTGTTCAGG
TTGCTGGTGGTACCGTCACTGGAGTCCTTGGTGTCAGCGCCGTTTTGCTTGGCACCAGTATCGTT
CTGAGTAGCAGCACTCTTGGGCTCGGCATCGCTATGCTTCGCTTGAGCCTCCTGAGTAGTCTTGC
TGAGGGCGCTTGACTCGGTACGAGTTCTCGACCGATGACGTTCATCGTCATTGTCGTGGTGGTAG
TCTTGGCCGTTCTTCCAAGGTGTGATGGAAGCCATCGGAATCTGACCGTTACTATCGTCGTACAT
AGAGCTGTAAACCGAAGCCATCGAATCTGCGTAGCTTTGGTCGTTGCCGTATCTGTTGTGGAGGA
TCTTGTCCATCAACGAAGGCTTTGCCGTGTAGTATTTAGTGCCGGCAGACCATTGGATGATATCG
TCATCGTCATCGTCATGGTCGCTGTCGTGATCGTGATCATCGTTG
Right flanking sequence: Indices 111599 -- 112098
GTCGTTATCGTGGTTGTAGTCTTGGCTGTTCTTCCAAGGGGTGATGGATGCCATAGGGATCTTGC
CATTAGTGTCATCGTACATTGAGCTGTACACAGAAACAACCGAGTCGGCGTAGCTCTTGTCGTTG
CCATATCTGTTGTGGAGAATCTTATCCATCAAAGACGGACTGGCCGTGTAGTACTTGGTACCGGC
TGACCATTGGATAAGATCGTCAGCGAGAACAGGAGCGGAAAGAAGAAAGAGTTGGTAAAACATGT
TTGGGTTCTTCGATAATCATGGTGCCTTATATAGTTGAACGCTACTATGTGCGTACAAGTCAAGG
CGTCAACAAGCATGGCAATCTGCAGCTGCTACAACTATTCCAGCCATTAGCTCCACAATTCGCAC
TAATCGGTCAAGGCTGTGCTGGCGTTCTGTGGGGAAACTCCGGTTCTGGTCATCAATATCTGTAA
CTAAGGGACAAGCCCATTGAAGTGACTATGTAGCTCTACTTCCCG
Done.