Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: scaffold62
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 319057
ACGTcount: A:0.23, C:0.27, G:0.27, T:0.23
Warning! 1 characters in sequence are not A, C, G, or T
Found at i:3127 original size:11 final size:11
Alignment explanation
Indices: 3111--3142 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
3101 CACACTACCA
3111 CAGCACCGACT
1 CAGCACCGACT
3122 CAGCACCGA--
1 CAGCACCGACT
3131 CAGCACCGACT
1 CAGCACCGACT
3142 C
1 C
3143 CACGCCAGCA
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
9 9 0.47
11 10 0.53
ACGTcount: A:0.28, C:0.47, G:0.19, T:0.06
Consensus pattern (11 bp):
CAGCACCGACT
Left flanking sequence: Indices 2611 -- 3110
GAACTACGAGCTGGTGCGGTTCAACCGGGCCGGCGAGATGACCGAGCGGTTGACGGAGGAGGCCG
GGATCGACACAAGCGGGATCGGGAGAGGAGGATCCTCGCGCACGCACGACAAGAAGGAGGAGGAC
GGAGGGGACGCACCACGGGAACACACCAACCCCGCACCCGGGCCCCGTGCCCAAAGCAGTGCCTC
CACCCGCCACGATGTCGACACCAACTTCGACTTGACCAAGGTGTTTGACAAACTCAACCTTGCCC
GGCTGGCGATGGAGGGGATGGACCAGAAGCAGAAGGAAAAGTACGCCAAGAGCGTGGTGGAGGAC
GTGCTCAATTTCATCTAGGTGCGAGCACCTTGCTACGGGTTAGTGTTTGAGATTAGCCATGCACC
TTGGGTGTTACTTCGAGCCCAAAGCTATCACAATGTTGCTGACGTTGTTACAGAACCCCCTCCTC
TACGCGTCTGTTTCAAATAACTTGGCTTGTGCAACCACACTACCA
Right flanking sequence: Indices 3143 -- 3642
CACGCCAGCACAGCACCGGCACCGGGTCACGCCATCCAAAAAACACAACCCCACCGTTCCCTTTC
TCAAATCCGTTTGGATCTTTCCACTCCTTCCCATCCACTGTAGTTTACCAACCTTCCTACTCACC
ACATCCATTTATCCATGCATTCTATTACTGTCTATATATATGCACAAGGGTCTCCAGGACCCGTC
CCAGAACCTTACTCCACCTTGGCGTACTCAATCTTGTAGCCCGGCTCAAAGTACACCTCCTGGCA
GTCCTCGCCGTCGACGCCGTTCTCGTAGATCATCACCCCAAAGTCGATGTGGTCGATCTTCTCGT
CAATCACCACCATGGGTGCGTGCCAGGTGCCGGCACCGTAGGTGACACCCTGGTTGCCGCGGCAC
ACAAAAGCCTTCACCAGCTTGGGGTCAGGCAACTTCTGGTCCAGGTTGGGGTCCAGCGAAGCCAC
AATCACCAAGTAGGCCTTCTTGTCCAGCTGCTCACCCATGGGCAC
Found at i:5643 original size:12 final size:12
Alignment explanation
Indices: 5626--5663 Score: 58
Period size: 12 Copynumber: 3.2 Consensus size: 12
5616 ATATAAGTAT
*
5626 TTGATAGATATG
1 TTGATAGAGATG
5638 TTGATAGAGATG
1 TTGATAGAGATG
*
5650 ATGATAGAGATG
1 TTGATAGAGATG
5662 TT
1 TT
5664 TCCCAGTGTC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.34, C:0.00, G:0.29, T:0.37
Consensus pattern (12 bp):
TTGATAGAGATG
Left flanking sequence: Indices 5126 -- 5625
AGAACGTCGGTGGTCAACTTGGATTCAAGGGGCAACACTCGGGTATCGCGTAAGTCCGCCTGCTC
CCACCGGCTCGCGAGAATTTCCACAGTAATGGTGTCCATGGTTTAGGGGTGGTCGCTACAAACGG
CTGAAGCTCGTTATATATGTGCTTTCTTTGTGGTTCGACAATGTCGTGGTCCTATTCTGGCGGTG
GTCCCACCGTCGATAACGTCACGTGGAGGGTTGCTTTGAATTTAGTACCACCATGTTACTACCAC
CTCATACGACGCAAAACAGAGGGCTACAGGACACTGGAAACCAAGAATGCGATCCTTTTGGTTTG
TAGAGTGCAGTCAGCCTTACGGCTGGTCTAACTACTGGGTGATTTTTCGAAACTTTTTGCAGCCA
GGACCAGACGTTTATTTCCGGCACACGGCATGACTACTGTAGTCGGCAAGGGACCAAGCTGTAGG
AAAGGAGGTATTTATGGGAAAAAAGATATAATGGTATATAAGTAT
Right flanking sequence: Indices 5664 -- 6163
TCCCAGTGTCCCAATCTTCTGTGTAGATTGAATGTTGGAGTCAGCAATGGCCTGGAAATGCCGAT
CTTAGGCTTAAACCACACCTGAACACCTCAAAACAAGATCACGAAACCGACTAGTATCAGGCTTG
TAGTCCGATGACAAGCTTGTATCTGATAAAGGTAGTGAAAGCAGCTCCGAGATACTTTTCAAAAA
CATCTCACTAGATTCCACCTCTCAAACACCTGCCATTTTTCACCTTTTTCACCTTTTTCACCCTT
TTCACTATTTGGCCACGGTCATTAACTGATTCTCTACCCCGCGTTACGCGTCTTGGTCGCTTGTT
TCCAATTCCATCAAAGCCTTTCGATGGCCTTGGGACAATAGCGTCGATCGTTCGTAAATATGTGA
CAATTTCACCCCAACAGCCTCGGGTATAACCACGTACGACCCCACTGCATCCACGTACCATCCGC
TACACCACACCTCTTCGCCCGACTTAAACCCGCCCATTCCGGCCA
Found at i:5916 original size:10 final size:9
Alignment explanation
Indices: 5894--5928 Score: 61
Period size: 9 Copynumber: 3.9 Consensus size: 9
5884 ACACCTGCCA
5894 TTTTTCACC
1 TTTTTCACC
5903 TTTTTCACC
1 TTTTTCACC
5912 TTTTTCACC
1 TTTTTCACC
*
5921 CTTTTCAC
1 TTTTTCAC
5929 TATTTGGCCA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
9 25 1.00
ACGTcount: A:0.11, C:0.34, G:0.00, T:0.54
Consensus pattern (9 bp):
TTTTTCACC
Left flanking sequence: Indices 5394 -- 5893
ACGCAAAACAGAGGGCTACAGGACACTGGAAACCAAGAATGCGATCCTTTTGGTTTGTAGAGTGC
AGTCAGCCTTACGGCTGGTCTAACTACTGGGTGATTTTTCGAAACTTTTTGCAGCCAGGACCAGA
CGTTTATTTCCGGCACACGGCATGACTACTGTAGTCGGCAAGGGACCAAGCTGTAGGAAAGGAGG
TATTTATGGGAAAAAAGATATAATGGTATATAAGTATTTGATAGATATGTTGATAGAGATGATGA
TAGAGATGTTTCCCAGTGTCCCAATCTTCTGTGTAGATTGAATGTTGGAGTCAGCAATGGCCTGG
AAATGCCGATCTTAGGCTTAAACCACACCTGAACACCTCAAAACAAGATCACGAAACCGACTAGT
ATCAGGCTTGTAGTCCGATGACAAGCTTGTATCTGATAAAGGTAGTGAAAGCAGCTCCGAGATAC
TTTTCAAAAACATCTCACTAGATTCCACCTCTCAAACACCTGCCA
Right flanking sequence: Indices 5929 -- 6428
TATTTGGCCACGGTCATTAACTGATTCTCTACCCCGCGTTACGCGTCTTGGTCGCTTGTTTCCAA
TTCCATCAAAGCCTTTCGATGGCCTTGGGACAATAGCGTCGATCGTTCGTAAATATGTGACAATT
TCACCCCAACAGCCTCGGGTATAACCACGTACGACCCCACTGCATCCACGTACCATCCGCTACAC
CACACCTCTTCGCCCGACTTAAACCCGCCCATTCCGGCCATCCCACCTCCCCACCTCACCTTGGT
CCACCCGTTCCCACCCATCCCGATCGGGTAAGCGCACACCACCCGGGCGTGACCACAACACGGAC
GCACCACCCGTCGTCTAATCCCCCCTTTCGCCACCCGAAACGCAGATAGATAGCCCGCCATCCCC
CCGGCCTCCCCACTGAGCCCGTCCACGCCCATGGCGCCCGGTCTCCTCACCAGGGATCCACCCCT
GCACACAACCCATCGCATACATACCACGCCACTGGATCAAACAAC
Found at i:9144 original size:20 final size:19
Alignment explanation
Indices: 9095--9146 Score: 63
Period size: 20 Copynumber: 2.7 Consensus size: 19
9085 GGTGGGTGGT
*
9095 GGTT-AAGGTGGTATCTGG
1 GGTTGAAGGTGGTTTCTGG
9113 GGTTG-AGAGTGGTTTCTGGG
1 GGTTGAAG-GTGGTTTCT-GG
9133 GGTTGAAGGTGGTT
1 GGTTGAAGGTGGTT
9147 GACGTGGATC
Statistics
Matches: 29, Mismatches: 1, Indels: 6
0.81 0.03 0.17
Matches are distributed among these distances:
18 6 0.21
19 8 0.28
20 13 0.45
21 2 0.07
ACGTcount: A:0.13, C:0.04, G:0.48, T:0.35
Consensus pattern (19 bp):
GGTTGAAGGTGGTTTCTGG
Left flanking sequence: Indices 8595 -- 9094
GCCGGCGCGGTGGTGTCGAAGCTCGTGCAGGCGTCGTCGATGATGCTGGCGCGCACCGTCAAGTA
CGTGGCGGTGCCGTTGGCGATCGGGGCGGTGGCGGTGACGCTGTGGTACCTCGTGAGCGACATTC
CCGCGGCGTACCCGCGCAACGTCGCCCGCAAGCTCAAGCGGCAGATCCACTCGATGGAGTACCCG
CACGCCAACGCCACGAGAACCGCGAAGGAGGTGCGCGAGGTGTTGAACTACCCGGCCCGCCAGGT
GCACGCCAACTTCCAGACGAGCTTGGACAAGCGCAAGGCGCAAAAAGAAAAGTTGGAGAAGGAGA
TCGCGGATGCCAACACCAGTTACGCTTACTTCTCGGGGCTCCACCACAAGATTGCTGCCGAGAAG
ACCCAGTTGCAGGGGATCGAGTTGGAGAGAGTCAACACTGTGGATTAATGTATATAGTAATCATG
ATGATATGAAAGAATGGAGGTGGTTGAGGGAGGGTGGTGGGTGGT
Right flanking sequence: Indices 9147 -- 9646
GACGTGGATCAGGGGGTTATTGGTGTTATCAGGTAGTTAGGTGGTATCTGAGGGTTAGCGGTGGT
CTGGGGGTTGACAGGTATCAGGAGGTTTTCGGTGGTACCAGGTGGTTGACGGTGTATCAGGTGGT
TGACGGTGGATCATGTGGTTACCGGTGTTGTGTTTGTGTCACCGCGTGCCTTCGGTGCAACTTTG
AAGGTTTTCTCGCGGGTTGTGGTTTGTGACGTGGTTGCAAAATACCCTTTCGGGAAGCGAGGTGG
CTTTGGTCGGTGAAGAGGAGAGGTAGCGATAAAGTAAGCTGAAAAGGGTTTGCTGTGAACATTGG
AGAATTCAGGTGGCAGTGTATTCATAAGTGTAGATTTGAGACCTTCAGAATGACTTTTAAAGAAA
AGTTGCGTAGCAAATAGAACTCAGTGAAATAGAAGGGTGTTTACGAGGTCCACGTTTATCTGCAA
CCCATTGTTGCGCTCCATAAGCACGGATATCTCTCACTGAGCACC
Found at i:9274 original size:19 final size:19
Alignment explanation
Indices: 9217--9296 Score: 81
Period size: 19 Copynumber: 4.2 Consensus size: 19
9207 GTGGTCTGGG
* *
9217 GGTTGACAG-GTATCAGGA
1 GGTTGACGGTGTATCAGGT
** *
9235 GGTTTTCGGTGGTACCAGGT
1 GGTTGACGGT-GTATCAGGT
9255 GGTTGACGGTGTATCAGGT
1 GGTTGACGGTGTATCAGGT
* *
9274 GGTTGACGGTGGATCATGT
1 GGTTGACGGTGTATCAGGT
9293 GGTT
1 GGTT
9297 ACCGGTGTTG
Statistics
Matches: 50, Mismatches: 10, Indels: 3
0.79 0.16 0.05
Matches are distributed among these distances:
18 6 0.12
19 29 0.58
20 15 0.30
ACGTcount: A:0.16, C:0.11, G:0.41, T:0.31
Consensus pattern (19 bp):
GGTTGACGGTGTATCAGGT
Left flanking sequence: Indices 8717 -- 9216
CGACATTCCCGCGGCGTACCCGCGCAACGTCGCCCGCAAGCTCAAGCGGCAGATCCACTCGATGG
AGTACCCGCACGCCAACGCCACGAGAACCGCGAAGGAGGTGCGCGAGGTGTTGAACTACCCGGCC
CGCCAGGTGCACGCCAACTTCCAGACGAGCTTGGACAAGCGCAAGGCGCAAAAAGAAAAGTTGGA
GAAGGAGATCGCGGATGCCAACACCAGTTACGCTTACTTCTCGGGGCTCCACCACAAGATTGCTG
CCGAGAAGACCCAGTTGCAGGGGATCGAGTTGGAGAGAGTCAACACTGTGGATTAATGTATATAG
TAATCATGATGATATGAAAGAATGGAGGTGGTTGAGGGAGGGTGGTGGGTGGTGGTTAAGGTGGT
ATCTGGGGTTGAGAGTGGTTTCTGGGGGTTGAAGGTGGTTGACGTGGATCAGGGGGTTATTGGTG
TTATCAGGTAGTTAGGTGGTATCTGAGGGTTAGCGGTGGTCTGGG
Right flanking sequence: Indices 9297 -- 9796
ACCGGTGTTGTGTTTGTGTCACCGCGTGCCTTCGGTGCAACTTTGAAGGTTTTCTCGCGGGTTGT
GGTTTGTGACGTGGTTGCAAAATACCCTTTCGGGAAGCGAGGTGGCTTTGGTCGGTGAAGAGGAG
AGGTAGCGATAAAGTAAGCTGAAAAGGGTTTGCTGTGAACATTGGAGAATTCAGGTGGCAGTGTA
TTCATAAGTGTAGATTTGAGACCTTCAGAATGACTTTTAAAGAAAAGTTGCGTAGCAAATAGAAC
TCAGTGAAATAGAAGGGTGTTTACGAGGTCCACGTTTATCTGCAACCCATTGTTGCGCTCCATAA
GCACGGATATCTCTCACTGAGCACCACTTCAGTCCGTCTCGGTCAAGTAAAACGATCCCTGTTTG
CCCGCACAATGGTAACGGCGAATATGCGGGCTAAAACGAGGGGAAATTAGAGCGTTTTGAGCGAT
TGGCACGCCTTTCGCCGTCGGATTATCCCGAAGAGTCCACTAAAA
Found at i:10089 original size:11 final size:11
Alignment explanation
Indices: 10073--10117 Score: 72
Period size: 11 Copynumber: 4.1 Consensus size: 11
10063 CCAACGCCAC
*
10073 CTCTCTTGCTT
1 CTCTCTTTCTT
10084 CTCTCTTTCTT
1 CTCTCTTTCTT
*
10095 TTCTCTTTCTT
1 CTCTCTTTCTT
10106 CTCTCTTTCTT
1 CTCTCTTTCTT
10117 C
1 C
10118 CGTGTATTAC
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
11 31 1.00
ACGTcount: A:0.00, C:0.36, G:0.02, T:0.62
Consensus pattern (11 bp):
CTCTCTTTCTT
Left flanking sequence: Indices 9573 -- 10072
GTGTTTACGAGGTCCACGTTTATCTGCAACCCATTGTTGCGCTCCATAAGCACGGATATCTCTCA
CTGAGCACCACTTCAGTCCGTCTCGGTCAAGTAAAACGATCCCTGTTTGCCCGCACAATGGTAAC
GGCGAATATGCGGGCTAAAACGAGGGGAAATTAGAGCGTTTTGAGCGATTGGCACGCCTTTCGCC
GTCGGATTATCCCGAAGAGTCCACTAAAAATCTGAAAGAATACCCCCGAATTAACTCAACCGTAG
CTCACTGGGACTTCTCTCAAACGTGCCTTGTAACCGCTTTCCTTCGTCCCTCCCTTGCCGCTACC
GGTTATTTTTTATGCACGTCAAACACAAAATCAAGGAATAACCCGATAATTGAGCCCACAGCGGG
GTAGACCAAAATAATGTCTGAGACCCCTCTTGTCGCCTTCTTTTCTCGGACATCTCCCCGCTGCG
GCCCCCAACGGCCCGAACCCGGTGGCATGCAGGCCCCAACGCCAC
Right flanking sequence: Indices 10118 -- 10617
CGTGTATTACCGATTACCTGAATTATATTCTATGCTCTAATCAACGGCTTGGCAACGTTCTCCGG
GCGTAGATCACGTAGACCGTCACAACCAACATCACGAAACAGAGCGCAAAACTGCCCTGGAACAC
CGGCTTGTAGCACCCGTTGCCCAACTCGCACACCCCGTCCACGGCGTGGGCGTCGTAGATCCAGC
CAAACACCTTGTTGAGCACGAAAAGCGTAAAGAACGGGCCCACACAGGTGAGACCCCAGGTGGTC
GAGAACGTCCGCGTGCCAAACTGGTCGGCAATCACCGCCGGGTAGGTGCCAAACACGAGCCCGTA
ACTGCACCCAATCAACGTCAGCGCCACCGAAAGCCAGAACGGGTCGGCCACGTTGACCGCCAGGA
TCAACTGGCCCAGCGCCAACGTGAAGCACGTGAGCACCGACAACCAGAGCCGCGAGTACCCGTGG
GTCTTGTGGATGTAGTCGCTCAAAAACCCCGCGAGCACCCGCCCG
Found at i:13344 original size:20 final size:20
Alignment explanation
Indices: 13321--13358 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
13311 CATATGGACT
13321 GGCCCAGTAGACCATGGATG
1 GGCCCAGTAGACCATGGATG
* *
13341 GGCCTAGTAGACCGTGGA
1 GGCCCAGTAGACCATGGA
13359 ATGGCTGGTC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.24, C:0.24, G:0.37, T:0.16
Consensus pattern (20 bp):
GGCCCAGTAGACCATGGATG
Left flanking sequence: Indices 12821 -- 13320
GTGGCCGAGGTCGAGCCCAGCACCCACCCGCTCGGCGACTTGGCGCTGAACGTGGTCAAGGGCGA
GCCGCTGGCTCCGGAGAACACCACCACGTACCCGGTGCTTGTGCGGGTGACGATGAACGGGACCA
AGCGCGGCGACAAACTGGGCAAAAAGAAGCTTTCGACCGTGGTCGAGGCTCCCCAGATGGAAGAG
TTCTGGGCCACCTACATCGGTGTGCTTCGAGACGGCATGGTGGGGTTGAAACAGACCCAGAAGAA
GAAGAAGAAGGAGAACAAAGTGACGAAGTAGGGACGAAGGGGACTCTAGCCCCAGGCTGGGTTGG
CATCGACACATAACTAATAAATCATTAACGTTTCATTGACTCAGAACCACGCTGGGTGGTATACG
TAGTTGTATATAGTAGACACGGAATGGACTGGCCTAGACCATGGAATGGCTGGCCCAGTATACCA
TGGAATGGCCTGGCCCGATAGGAATGGGCCTAGACCATATGGACT
Right flanking sequence: Indices 13359 -- 13858
ATGGCTGGTCTAGACTCTCCTCATCTGTAGGCGCGTCAACAACTCCGACGCAACAAGGAAACCCA
AGCCCTGCCTATTGGGTCTGTTCCCGCGTGACCTCTGCCGCATCCCTACGTGGAAGCTCGTTTCA
TGTTTGTTTTGGTTAGGTCGTGACCGACCGATAGACGAGCACCCGAAGGAATGCGGTTACCGAGA
ATGCCATTCGTAAATGCACCCGTCGTAATCGCCGTAAATGCACCCGTCGTAATCGCCGTAATGCA
TTAGGGTCGTCAGGACAACAGACGACGGGCGAGCCGTCACACTTACTCCTGTTCGACCATCAACA
TGCCCAGCGGGTAGATGGCCGGCACCTCGCTGATGGCCTCGTCGCGGTGCTCGTTCAACAGGACG
CGTGGCGGGACCGCCAGCACCAACGTGAACCCGTAGTGCATCGTAAAGTTGTGGAACTTGCTGGT
AAACTGCGTCTCGCTCATCTCCAGCGTGGCCGTGCCAAGCAAGCC
Found at i:13594 original size:24 final size:24
Alignment explanation
Indices: 13562--13618 Score: 107
Period size: 24 Copynumber: 2.4 Consensus size: 24
13552 GAATGCCATT
13562 CGTAAATGCACCCGTCGTAATCGC
1 CGTAAATGCACCCGTCGTAATCGC
13586 CGTAAATGCACCCGTCGTAATCGC
1 CGTAAATGCACCCGTCGTAATCGC
13610 CGT-AATGCA
1 CGTAAATGCA
13619 TTAGGGTCGT
Statistics
Matches: 33, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
23 6 0.18
24 27 0.82
ACGTcount: A:0.26, C:0.32, G:0.21, T:0.21
Consensus pattern (24 bp):
CGTAAATGCACCCGTCGTAATCGC
Left flanking sequence: Indices 13062 -- 13561
TGAAACAGACCCAGAAGAAGAAGAAGAAGGAGAACAAAGTGACGAAGTAGGGACGAAGGGGACTC
TAGCCCCAGGCTGGGTTGGCATCGACACATAACTAATAAATCATTAACGTTTCATTGACTCAGAA
CCACGCTGGGTGGTATACGTAGTTGTATATAGTAGACACGGAATGGACTGGCCTAGACCATGGAA
TGGCTGGCCCAGTATACCATGGAATGGCCTGGCCCGATAGGAATGGGCCTAGACCATATGGACTG
GCCCAGTAGACCATGGATGGGCCTAGTAGACCGTGGAATGGCTGGTCTAGACTCTCCTCATCTGT
AGGCGCGTCAACAACTCCGACGCAACAAGGAAACCCAAGCCCTGCCTATTGGGTCTGTTCCCGCG
TGACCTCTGCCGCATCCCTACGTGGAAGCTCGTTTCATGTTTGTTTTGGTTAGGTCGTGACCGAC
CGATAGACGAGCACCCGAAGGAATGCGGTTACCGAGAATGCCATT
Right flanking sequence: Indices 13619 -- 14118
TTAGGGTCGTCAGGACAACAGACGACGGGCGAGCCGTCACACTTACTCCTGTTCGACCATCAACA
TGCCCAGCGGGTAGATGGCCGGCACCTCGCTGATGGCCTCGTCGCGGTGCTCGTTCAACAGGACG
CGTGGCGGGACCGCCAGCACCAACGTGAACCCGTAGTGCATCGTAAAGTTGTGGAACTTGCTGGT
AAACTGCGTCTCGCTCATCTCCAGCGTGGCCGTGCCAAGCAAGCCCCGGTTCACCAACTCCACGT
ACGTGTAGAGGTCCTCGACCTTGCGCTCGCCGTCCATCACCACCTGTTTGCGCGAGCCGTCGCTA
AATTTGACGGCGATGCGGGCTCCCGACGCGTCGTCACGGGCGAACCGGTGGTGGGCCTGGTAGCG
CAACCACTGGTCCTCGGCCTGCTTGCGCTCGCGATGCAACTTCTTGAGCCGGTCCTGCTGCAACA
GCTGCTGGTACGACAAGTCCTGCTGGCGCTTGAGCACCTGGGACA
Found at i:15440 original size:23 final size:23
Alignment explanation
Indices: 15414--15459 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
15404 TAGGACCCTG
15414 GTGTGCCATTCGTAGCTTCTTTC
1 GTGTGCCATTCGTAGCTTCTTTC
* * *
15437 GTGTGTCATTTGTAGTTTCTTTC
1 GTGTGCCATTCGTAGCTTCTTTC
15460 ATATCATTTG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.09, C:0.20, G:0.22, T:0.50
Consensus pattern (23 bp):
GTGTGCCATTCGTAGCTTCTTTC
Left flanking sequence: Indices 14914 -- 15413
GGTTGCGCCCAAACACCCCGTTGATAAGATCCGCTAACGTCATGGGCGATGTCTGAGGTGGTTGT
GGACGGAGTCTTGGTATCGAGGTTAAGGCTGGGGTGTGCGTGGCTGTGTGCAGGCAGGAGTATAA
TTGCCACTGGAACGTTGTGGTAGCTGGGGGGGCGGTGGAAGGGAGAGGTGTAGGGGACGAATAGT
GAGGATGGAATAGATGAAGGGGTTGGAGGGTGGGTTTGCGAGAGATAGAATGTAGAATTTGAGTA
GAATCGTTAGTGGCTGGGGTAATTCAAGAGTAGAACCCTTTTAGGTAGAAGATAGCCAGTTCGGA
GTCGGCTGCTGACGCTAGGTTTCTCACCTGGGTCGAATCAATCCGTAATGATAAACAGAGATGTG
TGAGTACGTGTACGCCCTTGATCTACCGGTTTGATCACGGCCCGAGAGACGGTCACGTGGCCCGT
CTTTGAGTCCTTACCCGTGGTCTAGTCCAAAAACATAGGACCCTG
Right flanking sequence: Indices 15460 -- 15959
ATATCATTTGAAGTTCCTTAGCACTGCGCACACCCACATTACTCGGGTCTCCGGATCATCTTCTA
CATATTCCGCACGATTTTTCCGAAATCCATACAAAAACCAGGATATGGCGAATCGTCGCACTGCC
CGGGTTCGAGTGCAAACGCACGCATCGCCACTGGTGGCTAATGACGTAACATGACCACATAGTGC
CCAACCACTTTATAGTTGCGGTTAGACCAAATGCCACCACGTAACATCACCTCGCAGATTGTCCT
CACAACGAGCAACTCAATTAGCCACCAGGCGCGATGAGACCACGGGGTGGTGAATTGCGCGGGAT
GCAGATACGACTAAGCCAGCAAGCAGGGTGAAGCAAGAGAAACAAGGGAATCGTAGTCTCGTCAT
GATCAAACGGTTTGGCAACACCTTTTCTGTCAGCACGGAGCTCACAGCTACTCTCTATACCTCTA
CCCTTGCTACTCTACAATCTCTACTGAAACACTTTGTTCCACTTG
Found at i:17347 original size:12 final size:12
Alignment explanation
Indices: 17330--17376 Score: 76
Period size: 12 Copynumber: 3.9 Consensus size: 12
17320 GACCAGTCTT
17330 TACGCCCGACCC
1 TACGCCCGACCC
17342 TACGCCCGACCC
1 TACGCCCGACCC
* *
17354 TACACCCGACTC
1 TACGCCCGACCC
17366 TACGCCCGACC
1 TACGCCCGACC
17377 ACGCTTAACC
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 31 1.00
ACGTcount: A:0.19, C:0.55, G:0.15, T:0.11
Consensus pattern (12 bp):
TACGCCCGACCC
Left flanking sequence: Indices 16830 -- 17329
GCGAGCAGGGTGTCACCCAGCAGCACCACCGGCGACGTGGGCAGCCCGCGGAGACGCCTGCCTGC
GCGCCCCTGACCACTCACCTTTCTGTTTGCCGTTGGCTTTGCTGTTTTACCCCTCCAGATAGATG
TTCCAGATCTACCCCTCACTTTTTCTTGACCAGGGTGCGGTAGCACTAAACCCCTATTTCTTCCC
GTCGGACACGCGGACATTGTTCGCGCGGTGGTGCCGGCTGGAGCTCGTATTGGGCCACGGAGTGC
CCTTGGCCCGCGGGGCTGTGGTCCATGCCGTCGTGGTGCGTCGTGGTCCGTAGTCCCGTGGTGCG
TGTCCCGTAGAGGTGCGTGTAGCAACCCTCTCTGTGGCTGAGGTGCGCCAAGCGCAAGCGAACGG
CTAGGCTAGACCAAGCGTGGGTTGCGATAGGGGCGGTCTAGGGGCAGGTCTGGTGTCCCGTTTGG
GTGGTGTTAACTCCCAAACCAGCTCAGCTAAGCCCGACCAGTCTT
Right flanking sequence: Indices 17377 -- 17876
ACGCTTAACCCCCTCCCTTCAGCCGCTGCATTCTTCCCCCTCTTCCCCACGTCTCGAACTAACTA
TTCTTAACACCGGCTTCCGGGCTCAAATCAGGGAGCCCAAGAAAAAAGAACCAAAGCGGGGTCAC
GTCGGGGCTCTGGCGGGGGTGCCAGGCCCAGTGGTGGCCGTGTGTGTCGCCGTTTACCCGTCTAG
ATCTCACCTGGGTTGCTCAGGTGCACCCCCACGCACCCTGCGGGCTCCGCGCCCCGTTGCTGATA
ACATCGCGTCCGACCGACCCGCCTCAGGCCGTGCATGCATGGTATGCAGCCGCTGAGCGCCATAA
GGTGTTTAAATACGGAAAAGTCCCCAAAGTTTAGATCGACGAACGATACCGCACGGACCTGTTTG
ACACATTCTCGATCACCGATCCACCCCGAGACCCATTCTACGCACGCCCAATCCTCGCGTAGTAT
CCCATCGCAACTTGCAAATTTCAGCTACCGCTAAGGCACCAGAGC
Found at i:18030 original size:14 final size:14
Alignment explanation
Indices: 18011--18056 Score: 56
Period size: 14 Copynumber: 3.2 Consensus size: 14
18001 TTCTAACTAG
*
18011 TCCATTTGCTAGTC
1 TCCATTTACTAGTC
*
18025 TCCATTTACTAGTT
1 TCCATTTACTAGTC
*
18039 TCCGTTCTACTAGTC
1 TCCATT-TACTAGTC
18054 TCC
1 TCC
18057 TTTGCTAACG
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
14 17 0.63
15 10 0.37
ACGTcount: A:0.15, C:0.30, G:0.11, T:0.43
Consensus pattern (14 bp):
TCCATTTACTAGTC
Left flanking sequence: Indices 17511 -- 18010
GGGCTCTGGCGGGGGTGCCAGGCCCAGTGGTGGCCGTGTGTGTCGCCGTTTACCCGTCTAGATCT
CACCTGGGTTGCTCAGGTGCACCCCCACGCACCCTGCGGGCTCCGCGCCCCGTTGCTGATAACAT
CGCGTCCGACCGACCCGCCTCAGGCCGTGCATGCATGGTATGCAGCCGCTGAGCGCCATAAGGTG
TTTAAATACGGAAAAGTCCCCAAAGTTTAGATCGACGAACGATACCGCACGGACCTGTTTGACAC
ATTCTCGATCACCGATCCACCCCGAGACCCATTCTACGCACGCCCAATCCTCGCGTAGTATCCCA
TCGCAACTTGCAAATTTCAGCTACCGCTAAGGCACCAGAGCACATCGCACTAGCACGGCGCTGCA
CACCGCACTTCCGCCTATAAATTCCCGCTACCACTGACTAGCAGTAAGCGAATTCTCAGTACTCA
GCTAGCACAGCACGATTGAAACCCGCTAGCCTCCGTTCTAACTAG
Right flanking sequence: Indices 18057 -- 18556
TTTGCTAACGTCTGCTACAGCACACCTAGCACACACTCAGCACACGCTTGGCACACACACACCAA
GCACCCACACACACACACACACACATGTCTACTGTCATCACCAGGACCCAGCCGCCGTCGCGCGC
CACCGTGGCGCTCCCGACGCTACGGTTCCACGCCGAGTGTCTCCTGCTGCTCCTGACCCACTTCC
TCAACGGCGAGTTCGCGCTGTTCCCCACCACCAAGGTGTTGCACCCGCTTCTGCACACCCTGGCG
GAGATCCTGAGCCTCCTCTGCCGGCTCTCCGAGCGGTGCGTGCAGTTGATCACCACCGTCAAGAC
GTTCAACCTCCAGATCGCGCTGTTGGACGACCACCCCGAGGTGGTGGCGTCGCAGCTCGAGGACT
TGATCGAGGTGTTCTTCCACGACCGGTTGCAGCACCTCGTCGATGACATCATCGAGTTGTTGTAC
AAGTACAACATGCAGTTCGACTTCCGCCCGAAGCACTCGCTCAAC
Found at i:18803 original size:10 final size:10
Alignment explanation
Indices: 18787--18853 Score: 62
Period size: 10 Copynumber: 6.2 Consensus size: 10
18777 ACGCCAAAGT
*
18787 ACACGCCATG
1 ACACGCCACG
*
18797 CCACGCCACG
1 ACACGCCACG
18807 ACACGCCACG
1 ACACGCCACG
*
18817 ACACGCCAAAG
1 ACACGCC-ACG
18828 TACACGCCACGAG
1 -ACACGCCAC--G
18841 TACACGCCACG
1 -ACACGCCACG
18852 AC
1 AC
18854 GTATATAATG
Statistics
Matches: 48, Mismatches: 5, Indels: 8
0.79 0.08 0.13
Matches are distributed among these distances:
10 26 0.54
11 4 0.08
12 7 0.15
13 11 0.23
ACGTcount: A:0.31, C:0.45, G:0.19, T:0.04
Consensus pattern (10 bp):
ACACGCCACG
Left flanking sequence: Indices 18287 -- 18786
GTGTTGCACCCGCTTCTGCACACCCTGGCGGAGATCCTGAGCCTCCTCTGCCGGCTCTCCGAGCG
GTGCGTGCAGTTGATCACCACCGTCAAGACGTTCAACCTCCAGATCGCGCTGTTGGACGACCACC
CCGAGGTGGTGGCGTCGCAGCTCGAGGACTTGATCGAGGTGTTCTTCCACGACCGGTTGCAGCAC
CTCGTCGATGACATCATCGAGTTGTTGTACAAGTACAACATGCAGTTCGACTTCCGCCCGAAGCA
CTCGCTCAACGCGGGGCCGTCGTTGCTCCACCTCCAGCGGGTGGTGGGCGGCGCGGTGATGCCGC
CCACCGCGGTGAGCGTCGCCGACTTGGACAACTACCTGTTTGTCGAGCAGGTGCTCCTGGCGCAC
GCGTTCTTGACCCCCGCGGACTTGACGCAGTTGGCGCGGGTGGTGGACCGCATCCAGGCCGCGGG
CGGCGTGTAGGCGCCACGGTACACTCCATGAGTACACGCCAAAGT
Right flanking sequence: Indices 18854 -- 19353
GTATATAATGAATTAACGAGTTATGATCACAAGATGTAGGGAACTGGAGAGGGTGTAGGGAACTG
GGAGAAGTGTAGGAAATTGGAAAAAGGTGTATGGAATTGGGAGAAGTTGCAGGTTGTTGGATGTG
GTGGATGTGGTGGATGTGACTGTTCTGGTTACTTCGGCGCGTTAAGTGGTTGTGGAGGATATGGT
TGTCGAGGTTGTGGAAGTTGTGGAGGTTGTGGTTGTGTTTGTGGCGGTTGTATTAGTTTTGGCTG
TTTTGGACTTGGTGGATTTGATTAGGACTATCCAATGGGTTTATGATCACCTGTGGTGGAAAGAA
GTGGAAGAAATAGTGGTAGCAAGAGACCAGGGGAACAGTGCGAAAACAAGTACCAGTCCCAGCTG
GGGGGCCGCAGGCGGCGCCCCCCAGACCCCCCACCGCCTTCTTGGTGGGTTGTTGTGGCTCTTGG
TTGGATTGACTGGGCTTTTTATTGTGTGTTGGAGTGGTTTATAAT
Found at i:18845 original size:25 final size:23
Alignment explanation
Indices: 18775--18849 Score: 77
Period size: 20 Copynumber: 3.3 Consensus size: 23
18765 CTCCATGAGT
*
18775 ACACGCCAAAGTACACGCCA-TG
1 ACACGCCAAAGTACACGCCACAG
* *
18797 CCACGCC-ACG-ACACGCCAC-G
1 ACACGCCAAAGTACACGCCACAG
18817 ACACGCCAAAGTACACGCCACGAG
1 ACACGCCAAAGTACACGCCAC-AG
18841 TACACGCCA
1 -ACACGCCA
18850 CGACGTATAT
Statistics
Matches: 43, Mismatches: 4, Indels: 9
0.77 0.07 0.16
Matches are distributed among these distances:
20 15 0.35
21 4 0.09
22 15 0.35
24 1 0.02
25 8 0.19
ACGTcount: A:0.33, C:0.43, G:0.19, T:0.05
Consensus pattern (23 bp):
ACACGCCAAAGTACACGCCACAG
Left flanking sequence: Indices 18275 -- 18774
CCCACCACCAAGGTGTTGCACCCGCTTCTGCACACCCTGGCGGAGATCCTGAGCCTCCTCTGCCG
GCTCTCCGAGCGGTGCGTGCAGTTGATCACCACCGTCAAGACGTTCAACCTCCAGATCGCGCTGT
TGGACGACCACCCCGAGGTGGTGGCGTCGCAGCTCGAGGACTTGATCGAGGTGTTCTTCCACGAC
CGGTTGCAGCACCTCGTCGATGACATCATCGAGTTGTTGTACAAGTACAACATGCAGTTCGACTT
CCGCCCGAAGCACTCGCTCAACGCGGGGCCGTCGTTGCTCCACCTCCAGCGGGTGGTGGGCGGCG
CGGTGATGCCGCCCACCGCGGTGAGCGTCGCCGACTTGGACAACTACCTGTTTGTCGAGCAGGTG
CTCCTGGCGCACGCGTTCTTGACCCCCGCGGACTTGACGCAGTTGGCGCGGGTGGTGGACCGCAT
CCAGGCCGCGGGCGGCGTGTAGGCGCCACGGTACACTCCATGAGT
Right flanking sequence: Indices 18850 -- 19349
CGACGTATATAATGAATTAACGAGTTATGATCACAAGATGTAGGGAACTGGAGAGGGTGTAGGGA
ACTGGGAGAAGTGTAGGAAATTGGAAAAAGGTGTATGGAATTGGGAGAAGTTGCAGGTTGTTGGA
TGTGGTGGATGTGGTGGATGTGACTGTTCTGGTTACTTCGGCGCGTTAAGTGGTTGTGGAGGATA
TGGTTGTCGAGGTTGTGGAAGTTGTGGAGGTTGTGGTTGTGTTTGTGGCGGTTGTATTAGTTTTG
GCTGTTTTGGACTTGGTGGATTTGATTAGGACTATCCAATGGGTTTATGATCACCTGTGGTGGAA
AGAAGTGGAAGAAATAGTGGTAGCAAGAGACCAGGGGAACAGTGCGAAAACAAGTACCAGTCCCA
GCTGGGGGGCCGCAGGCGGCGCCCCCCAGACCCCCCACCGCCTTCTTGGTGGGTTGTTGTGGCTC
TTGGTTGGATTGACTGGGCTTTTTATTGTGTGTTGGAGTGGTTTA
Found at i:18928 original size:19 final size:19
Alignment explanation
Indices: 18888--18965 Score: 68
Period size: 19 Copynumber: 4.1 Consensus size: 19
18878 GATCACAAGA
*
18888 TGTAGGGAACT-GGAGAGGG
1 TGTAGGGAACTGGGAGA-AG
18907 TGTAGGGAACTGGGAGAAG
1 TGTAGGGAACTGGGAGAAG
* * * *
18926 TGTAGGAAATTGGAAAAAGG
1 TGTAGGGAACTGGGAGAA-G
* *
18946 TGTATGGAATTGGGAGAAG
1 TGTAGGGAACTGGGAGAAG
18965 T
1 T
18966 TGCAGGTTGT
Statistics
Matches: 48, Mismatches: 9, Indels: 4
0.79 0.15 0.07
Matches are distributed among these distances:
19 28 0.58
20 20 0.42
ACGTcount: A:0.33, C:0.03, G:0.44, T:0.21
Consensus pattern (19 bp):
TGTAGGGAACTGGGAGAAG
Left flanking sequence: Indices 18388 -- 18887
CCTCCAGATCGCGCTGTTGGACGACCACCCCGAGGTGGTGGCGTCGCAGCTCGAGGACTTGATCG
AGGTGTTCTTCCACGACCGGTTGCAGCACCTCGTCGATGACATCATCGAGTTGTTGTACAAGTAC
AACATGCAGTTCGACTTCCGCCCGAAGCACTCGCTCAACGCGGGGCCGTCGTTGCTCCACCTCCA
GCGGGTGGTGGGCGGCGCGGTGATGCCGCCCACCGCGGTGAGCGTCGCCGACTTGGACAACTACC
TGTTTGTCGAGCAGGTGCTCCTGGCGCACGCGTTCTTGACCCCCGCGGACTTGACGCAGTTGGCG
CGGGTGGTGGACCGCATCCAGGCCGCGGGCGGCGTGTAGGCGCCACGGTACACTCCATGAGTACA
CGCCAAAGTACACGCCATGCCACGCCACGACACGCCACGACACGCCAAAGTACACGCCACGAGTA
CACGCCACGACGTATATAATGAATTAACGAGTTATGATCACAAGA
Right flanking sequence: Indices 18966 -- 19465
TGCAGGTTGTTGGATGTGGTGGATGTGGTGGATGTGACTGTTCTGGTTACTTCGGCGCGTTAAGT
GGTTGTGGAGGATATGGTTGTCGAGGTTGTGGAAGTTGTGGAGGTTGTGGTTGTGTTTGTGGCGG
TTGTATTAGTTTTGGCTGTTTTGGACTTGGTGGATTTGATTAGGACTATCCAATGGGTTTATGAT
CACCTGTGGTGGAAAGAAGTGGAAGAAATAGTGGTAGCAAGAGACCAGGGGAACAGTGCGAAAAC
AAGTACCAGTCCCAGCTGGGGGGCCGCAGGCGGCGCCCCCCAGACCCCCCACCGCCTTCTTGGTG
GGTTGTTGTGGCTCTTGGTTGGATTGACTGGGCTTTTTATTGTGTGTTGGAGTGGTTTATAATTC
TATTGACCATGTTGGAGTGGTTTATAATTCTATTGACCAGTTATTGGATGTCGTGTAGTACAATC
GCGCCATTGATAGTTTAGGTGGGTCAGGAACTTACAATTGGGTTA
Found at i:18990 original size:9 final size:9
Alignment explanation
Indices: 18976--19001 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
18966 TGCAGGTTGT
18976 TGGATGTGG
1 TGGATGTGG
18985 TGGATGTGG
1 TGGATGTGG
18994 TGGATGTG
1 TGGATGTG
19002 ACTGTTCTGG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.12, C:0.00, G:0.54, T:0.35
Consensus pattern (9 bp):
TGGATGTGG
Left flanking sequence: Indices 18476 -- 18975
CAGCACCTCGTCGATGACATCATCGAGTTGTTGTACAAGTACAACATGCAGTTCGACTTCCGCCC
GAAGCACTCGCTCAACGCGGGGCCGTCGTTGCTCCACCTCCAGCGGGTGGTGGGCGGCGCGGTGA
TGCCGCCCACCGCGGTGAGCGTCGCCGACTTGGACAACTACCTGTTTGTCGAGCAGGTGCTCCTG
GCGCACGCGTTCTTGACCCCCGCGGACTTGACGCAGTTGGCGCGGGTGGTGGACCGCATCCAGGC
CGCGGGCGGCGTGTAGGCGCCACGGTACACTCCATGAGTACACGCCAAAGTACACGCCATGCCAC
GCCACGACACGCCACGACACGCCAAAGTACACGCCACGAGTACACGCCACGACGTATATAATGAA
TTAACGAGTTATGATCACAAGATGTAGGGAACTGGAGAGGGTGTAGGGAACTGGGAGAAGTGTAG
GAAATTGGAAAAAGGTGTATGGAATTGGGAGAAGTTGCAGGTTGT
Right flanking sequence: Indices 19002 -- 19501
ACTGTTCTGGTTACTTCGGCGCGTTAAGTGGTTGTGGAGGATATGGTTGTCGAGGTTGTGGAAGT
TGTGGAGGTTGTGGTTGTGTTTGTGGCGGTTGTATTAGTTTTGGCTGTTTTGGACTTGGTGGATT
TGATTAGGACTATCCAATGGGTTTATGATCACCTGTGGTGGAAAGAAGTGGAAGAAATAGTGGTA
GCAAGAGACCAGGGGAACAGTGCGAAAACAAGTACCAGTCCCAGCTGGGGGGCCGCAGGCGGCGC
CCCCCAGACCCCCCACCGCCTTCTTGGTGGGTTGTTGTGGCTCTTGGTTGGATTGACTGGGCTTT
TTATTGTGTGTTGGAGTGGTTTATAATTCTATTGACCATGTTGGAGTGGTTTATAATTCTATTGA
CCAGTTATTGGATGTCGTGTAGTACAATCGCGCCATTGATAGTTTAGGTGGGTCAGGAACTTACA
ATTGGGTTAAGTAGGTAGGCTATTAGCTATGTCATTAGGGTGAGT
Found at i:19085 original size:15 final size:15
Alignment explanation
Indices: 19029--19085 Score: 60
Period size: 15 Copynumber: 3.6 Consensus size: 15
19019 GGCGCGTTAA
*
19029 GTGGTTGTGGAGGAT
1 GTGGTTGTGGAGGTT
* *
19044 ATGGTTGTCGAGGTT
1 GTGGTTGTGGAGGTT
19059 GTGGAAGTTGTGGAGGTT
1 GT-G--GTTGTGGAGGTT
19077 GTGGTTGTG
1 GTGGTTGTG
19086 TTTGTGGCGG
Statistics
Matches: 34, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
15 19 0.56
16 1 0.03
17 1 0.03
18 13 0.38
ACGTcount: A:0.12, C:0.02, G:0.49, T:0.37
Consensus pattern (15 bp):
GTGGTTGTGGAGGTT
Left flanking sequence: Indices 18529 -- 19028
CGACTTCCGCCCGAAGCACTCGCTCAACGCGGGGCCGTCGTTGCTCCACCTCCAGCGGGTGGTGG
GCGGCGCGGTGATGCCGCCCACCGCGGTGAGCGTCGCCGACTTGGACAACTACCTGTTTGTCGAG
CAGGTGCTCCTGGCGCACGCGTTCTTGACCCCCGCGGACTTGACGCAGTTGGCGCGGGTGGTGGA
CCGCATCCAGGCCGCGGGCGGCGTGTAGGCGCCACGGTACACTCCATGAGTACACGCCAAAGTAC
ACGCCATGCCACGCCACGACACGCCACGACACGCCAAAGTACACGCCACGAGTACACGCCACGAC
GTATATAATGAATTAACGAGTTATGATCACAAGATGTAGGGAACTGGAGAGGGTGTAGGGAACTG
GGAGAAGTGTAGGAAATTGGAAAAAGGTGTATGGAATTGGGAGAAGTTGCAGGTTGTTGGATGTG
GTGGATGTGGTGGATGTGACTGTTCTGGTTACTTCGGCGCGTTAA
Right flanking sequence: Indices 19086 -- 19585
TTTGTGGCGGTTGTATTAGTTTTGGCTGTTTTGGACTTGGTGGATTTGATTAGGACTATCCAATG
GGTTTATGATCACCTGTGGTGGAAAGAAGTGGAAGAAATAGTGGTAGCAAGAGACCAGGGGAACA
GTGCGAAAACAAGTACCAGTCCCAGCTGGGGGGCCGCAGGCGGCGCCCCCCAGACCCCCCACCGC
CTTCTTGGTGGGTTGTTGTGGCTCTTGGTTGGATTGACTGGGCTTTTTATTGTGTGTTGGAGTGG
TTTATAATTCTATTGACCATGTTGGAGTGGTTTATAATTCTATTGACCAGTTATTGGATGTCGTG
TAGTACAATCGCGCCATTGATAGTTTAGGTGGGTCAGGAACTTACAATTGGGTTAAGTAGGTAGG
CTATTAGCTATGTCATTAGGGTGAGTAGGTCGTTAGCGTGAGTTATCGTTAGCGTAGGTGGTGGG
TGGGATTGTAGTCAGTTTGTCCTTCCAACGCTCGCGTTGGTTGTC
Found at i:19099 original size:9 final size:9
Alignment explanation
Indices: 19046--19080 Score: 52
Period size: 9 Copynumber: 3.9 Consensus size: 9
19036 TGGAGGATAT
*
19046 GGTTGTCGA
1 GGTTGTGGA
19055 GGTTGTGGA
1 GGTTGTGGA
*
19064 AGTTGTGGA
1 GGTTGTGGA
19073 GGTTGTGG
1 GGTTGTGG
19081 TTGTGTTTGT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
9 23 1.00
ACGTcount: A:0.11, C:0.03, G:0.51, T:0.34
Consensus pattern (9 bp):
GGTTGTGGA
Left flanking sequence: Indices 18546 -- 19045
ACTCGCTCAACGCGGGGCCGTCGTTGCTCCACCTCCAGCGGGTGGTGGGCGGCGCGGTGATGCCG
CCCACCGCGGTGAGCGTCGCCGACTTGGACAACTACCTGTTTGTCGAGCAGGTGCTCCTGGCGCA
CGCGTTCTTGACCCCCGCGGACTTGACGCAGTTGGCGCGGGTGGTGGACCGCATCCAGGCCGCGG
GCGGCGTGTAGGCGCCACGGTACACTCCATGAGTACACGCCAAAGTACACGCCATGCCACGCCAC
GACACGCCACGACACGCCAAAGTACACGCCACGAGTACACGCCACGACGTATATAATGAATTAAC
GAGTTATGATCACAAGATGTAGGGAACTGGAGAGGGTGTAGGGAACTGGGAGAAGTGTAGGAAAT
TGGAAAAAGGTGTATGGAATTGGGAGAAGTTGCAGGTTGTTGGATGTGGTGGATGTGGTGGATGT
GACTGTTCTGGTTACTTCGGCGCGTTAAGTGGTTGTGGAGGATAT
Right flanking sequence: Indices 19081 -- 19580
TTGTGTTTGTGGCGGTTGTATTAGTTTTGGCTGTTTTGGACTTGGTGGATTTGATTAGGACTATC
CAATGGGTTTATGATCACCTGTGGTGGAAAGAAGTGGAAGAAATAGTGGTAGCAAGAGACCAGGG
GAACAGTGCGAAAACAAGTACCAGTCCCAGCTGGGGGGCCGCAGGCGGCGCCCCCCAGACCCCCC
ACCGCCTTCTTGGTGGGTTGTTGTGGCTCTTGGTTGGATTGACTGGGCTTTTTATTGTGTGTTGG
AGTGGTTTATAATTCTATTGACCATGTTGGAGTGGTTTATAATTCTATTGACCAGTTATTGGATG
TCGTGTAGTACAATCGCGCCATTGATAGTTTAGGTGGGTCAGGAACTTACAATTGGGTTAAGTAG
GTAGGCTATTAGCTATGTCATTAGGGTGAGTAGGTCGTTAGCGTGAGTTATCGTTAGCGTAGGTG
GTGGGTGGGATTGTAGTCAGTTTGTCCTTCCAACGCTCGCGTTGG
Found at i:19369 original size:30 final size:30
Alignment explanation
Indices: 19335--19394 Score: 120
Period size: 30 Copynumber: 2.0 Consensus size: 30
19325 TTTTATTGTG
19335 TGTTGGAGTGGTTTATAATTCTATTGACCA
1 TGTTGGAGTGGTTTATAATTCTATTGACCA
19365 TGTTGGAGTGGTTTATAATTCTATTGACCA
1 TGTTGGAGTGGTTTATAATTCTATTGACCA
19395 GTTATTGGAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.23, C:0.10, G:0.23, T:0.43
Consensus pattern (30 bp):
TGTTGGAGTGGTTTATAATTCTATTGACCA
Left flanking sequence: Indices 18835 -- 19334
CACGAGTACACGCCACGACGTATATAATGAATTAACGAGTTATGATCACAAGATGTAGGGAACTG
GAGAGGGTGTAGGGAACTGGGAGAAGTGTAGGAAATTGGAAAAAGGTGTATGGAATTGGGAGAAG
TTGCAGGTTGTTGGATGTGGTGGATGTGGTGGATGTGACTGTTCTGGTTACTTCGGCGCGTTAAG
TGGTTGTGGAGGATATGGTTGTCGAGGTTGTGGAAGTTGTGGAGGTTGTGGTTGTGTTTGTGGCG
GTTGTATTAGTTTTGGCTGTTTTGGACTTGGTGGATTTGATTAGGACTATCCAATGGGTTTATGA
TCACCTGTGGTGGAAAGAAGTGGAAGAAATAGTGGTAGCAAGAGACCAGGGGAACAGTGCGAAAA
CAAGTACCAGTCCCAGCTGGGGGGCCGCAGGCGGCGCCCCCCAGACCCCCCACCGCCTTCTTGGT
GGGTTGTTGTGGCTCTTGGTTGGATTGACTGGGCTTTTTATTGTG
Right flanking sequence: Indices 19395 -- 19894
GTTATTGGATGTCGTGTAGTACAATCGCGCCATTGATAGTTTAGGTGGGTCAGGAACTTACAATT
GGGTTAAGTAGGTAGGCTATTAGCTATGTCATTAGGGTGAGTAGGTCGTTAGCGTGAGTTATCGT
TAGCGTAGGTGGTGGGTGGGATTGTAGTCAGTTTGTCCTTCCAACGCTCGCGTTGGTTGTCCTTC
CAACCCTACCCGCTTAGACACCGTTGATCTCATCGTGATTGTGCTGGGCGTTAGTCTGGCGTGAC
AATGTCTGTCACCCGATTGATCTCATCCACCGGGTGGTCGCTACCAATTGTTCCCGGTATTGTTC
GGTGCACATACCCGCCTAGCATCCCGACAATGGGTGGGAGGGTGAGAGATGACGAGTGGGCTCGT
GGGCTCGTGGGGGACAGGGAAGGGGCCCTGTGTTGAGACCAGCCAACACGTGGACGAGGTAGTTG
TATGTGTGGGCTTTTGTAACCATCCATACTGTTTTCAGTCCGTAA
Found at i:23071 original size:41 final size:41
Alignment explanation
Indices: 22961--23112 Score: 184
Period size: 41 Copynumber: 3.8 Consensus size: 41
22951 ATCGCTTTAT
**
22961 CAAAGTGTCTCTAGAGCGCATCGAGCGGTAATTTCACCAAA
1 CAAAGTGTCTCTAGAGCGCATCGAGCGGTTCTTTCACCAAA
* * * * *
23002 AAAAGTG--TCTAAAACGCATCGACCGGTTCTTTCTCCAAA
1 CAAAGTGTCTCTAGAGCGCATCGAGCGGTTCTTTCACCAAA
*
23041 CAAAGTGTCTCTAGGGCGCATCGAGCGGTTCTTTCACCAAA
1 CAAAGTGTCTCTAGAGCGCATCGAGCGGTTCTTTCACCAAA
* *
23082 -AAGAGTGTCTCTAGGGCGCATCGGGCGGTTC
1 CAA-AGTGTCTCTAGAGCGCATCGAGCGGTTC
23113 GTGGGTGCTT
Statistics
Matches: 94, Mismatches: 14, Indels: 6
0.82 0.12 0.05
Matches are distributed among these distances:
39 32 0.34
40 2 0.02
41 60 0.64
ACGTcount: A:0.27, C:0.25, G:0.24, T:0.24
Consensus pattern (41 bp):
CAAAGTGTCTCTAGAGCGCATCGAGCGGTTCTTTCACCAAA
Left flanking sequence: Indices 22461 -- 22960
CATCTAAACGCTGTAATAATGGACCTGGTTGACTCTCGCTGCCCTGCTTGACCGTATTCCCACCT
TTCGTGGCTATGCCCTTTGGCTCTAAAGTACTACATGCAGGATTTGCAACCACGGCTGAACCCAA
CGGGTGAAAAATACGCCAATCCCGATGGCGTCCCGATTGGTGACGACATACGTGTTCTCGGGCCC
ACTGGGATGGTCCTAGCGATGACCGTTTGAGCTGACGACGGTTTCCGCGTCAAGTGTTTTTGACC
ACCTCTTTTTCAATTACGTCGGATTTAGCAAGAAAAGTCAGACAGAGATGAGCATTGAGGCATCT
TTCAAGAGAAAAAGCTGTGATATGAGCCTATAACCTTCGTGCTCAAATAAAAAGCCTATTAACCT
CGTGGTAATGTCCGTGCTAGTGCCTAATCCGACTCTGAAGGCGACCGTCCAGACCCTACACGTAC
CCTGTCTGCAGCCGTATCAGCCCATTTGCAGCCAGATCGCTTTAT
Right flanking sequence: Indices 23113 -- 23612
GTGGGTGCTTCCACCCTCTACGAGTCGCCCACCTTTACGAGTCGCCCAACCTGCTTCTATAACCC
TCCGTTTCCTATTCACCCTATACAGCCTCTTCTATAATTCTCCGTTACCTATTACCCTATGTAGC
CTCTACCCCTCGTTACCTATTTCCTTCACCCACACCTTCCCCCGGGCTCGGTCCACACTAAACAA
TTCTCCACCATCCCCATCACCTCGTCGAGGCTCATCACCCTCACCTCGGCCCCCCGGTACACCAT
CGCCTTCACCGCAGGACAATACCGAAACACCGAGACAAACGTCGCCCCGTGGATACTCACATAGG
TAATCCCGCCCGCCCCACAGCTCAAGGTCACCGTCAAATCCTTACAGAGGACCTCGCCCCGCAAC
TGGCCGTCGTGGATGCAAAAATTTGCCGGCCGTCGAAACACCCCGAGGCGTTTGAACCGGACCTG
CCACTCCAAAGCGTCGACCGCCAGGTCTGGAAGCTCCCAGTGGGA
Found at i:23246 original size:39 final size:40
Alignment explanation
Indices: 23166--23246 Score: 110
Period size: 40 Copynumber: 2.0 Consensus size: 40
23156 GCCCAACCTG
*
23166 CTTCTATAACCCTCCGTTTCCTATTCACCCTATACAGCCT
1 CTTCTATAACCCTCCGTTACCTATTCACCCTATACAGCCT
** **
23206 CTTCTATAATTCTCCGTTACCTATT-ACCCTATGTAGCCT
1 CTTCTATAACCCTCCGTTACCTATTCACCCTATACAGCCT
23245 CT
1 CT
23247 ACCCCTCGTT
Statistics
Matches: 36, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
39 14 0.39
40 22 0.61
ACGTcount: A:0.20, C:0.36, G:0.06, T:0.38
Consensus pattern (40 bp):
CTTCTATAACCCTCCGTTACCTATTCACCCTATACAGCCT
Left flanking sequence: Indices 22666 -- 23165
TCCTAGCGATGACCGTTTGAGCTGACGACGGTTTCCGCGTCAAGTGTTTTTGACCACCTCTTTTT
CAATTACGTCGGATTTAGCAAGAAAAGTCAGACAGAGATGAGCATTGAGGCATCTTTCAAGAGAA
AAAGCTGTGATATGAGCCTATAACCTTCGTGCTCAAATAAAAAGCCTATTAACCTCGTGGTAATG
TCCGTGCTAGTGCCTAATCCGACTCTGAAGGCGACCGTCCAGACCCTACACGTACCCTGTCTGCA
GCCGTATCAGCCCATTTGCAGCCAGATCGCTTTATCAAAGTGTCTCTAGAGCGCATCGAGCGGTA
ATTTCACCAAAAAAAGTGTCTAAAACGCATCGACCGGTTCTTTCTCCAAACAAAGTGTCTCTAGG
GCGCATCGAGCGGTTCTTTCACCAAAAAGAGTGTCTCTAGGGCGCATCGGGCGGTTCGTGGGTGC
TTCCACCCTCTACGAGTCGCCCACCTTTACGAGTCGCCCAACCTG
Right flanking sequence: Indices 23247 -- 23746
ACCCCTCGTTACCTATTTCCTTCACCCACACCTTCCCCCGGGCTCGGTCCACACTAAACAATTCT
CCACCATCCCCATCACCTCGTCGAGGCTCATCACCCTCACCTCGGCCCCCCGGTACACCATCGCC
TTCACCGCAGGACAATACCGAAACACCGAGACAAACGTCGCCCCGTGGATACTCACATAGGTAAT
CCCGCCCGCCCCACAGCTCAAGGTCACCGTCAAATCCTTACAGAGGACCTCGCCCCGCAACTGGC
CGTCGTGGATGCAAAAATTTGCCGGCCGTCGAAACACCCCGAGGCGTTTGAACCGGACCTGCCAC
TCCAAAGCGTCGACCGCCAGGTCTGGAAGCTCCCAGTGGGAGGGCCAGCCTCCCGTGGGATGCCC
GGGCCCGGCCACGGCCACCGTGCCCGGCACACACGTACAAATGTGGAGCCAGTGGGCTGCTACTC
CCACGGCGAACCCGGTCACAGCAGCCACTACAAGAACATCGAGGA
Found at i:24040 original size:13 final size:13
Alignment explanation
Indices: 24022--24046 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
24012 GACTCAAGTC
24022 TCCAGTCTTCGTT
1 TCCAGTCTTCGTT
24035 TCCAGTCTTCGT
1 TCCAGTCTTCGT
24047 AGTCTCCAGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.08, C:0.32, G:0.16, T:0.44
Consensus pattern (13 bp):
TCCAGTCTTCGTT
Left flanking sequence: Indices 23522 -- 24021
AATTTGCCGGCCGTCGAAACACCCCGAGGCGTTTGAACCGGACCTGCCACTCCAAAGCGTCGACC
GCCAGGTCTGGAAGCTCCCAGTGGGAGGGCCAGCCTCCCGTGGGATGCCCGGGCCCGGCCACGGC
CACCGTGCCCGGCACACACGTACAAATGTGGAGCCAGTGGGCTGCTACTCCCACGGCGAACCCGG
TCACAGCAGCCACTACAAGAACATCGAGGATGGCGTCGCCATAGCTCACTGCAAACCACACGAAC
CCGTCGCTGTCCATGGCCGCTTTTCTGGGGAACCGGGTCCATATATAGTCGCCTATCGATCTTGC
ATGAACAACGGTAGGCCCGGGTTTCTTTACACGGTATTTTTAAGGCATCCTGCTCGTCAATGCAG
AAGTGGGCAAACAAATAAGGACAAGAAAAGCGAAGGGGGTGGACGAAGACAGGCGGAAATATAGA
ATTTGTCTACAGCCTCCCAGATTGAGGTAGATTGAGACTCAAGTC
Right flanking sequence: Indices 24047 -- 24546
AGTCTCCAGTCTTTGTGGTCTCCAGTCCTCGTAGTGTCCAGTCTTTGTAGTCTCCAGTCTCCGCT
GGAAAATCTTGTCTGTGCGTTCTTTAGTGACGTCTTTGTTTTGGTTTTGACGTGGTTCCACTTGT
TCGATTCTGGGACCTGCAGTTATGACGTATGCCATGGCTTGATGAGGGCTTAGGGATTACAAAGT
CCGTCCCCACACCAGCCGCATTCTGCTGTGGCTATTTTCCTACTTTTCTGCTTTCTTTCACACCA
GCACGGCTGACTCTGTCCACCACCCTCGGATCGCAGGTGTTGCATCAAGCCAAGACTGGAATACT
GTACTGGGGTGCTGGATACTGGGATAATTTACTGATACTTTGCTAGGATTTGCTCTATAAAAAAC
GGAATATTTACCACTGGAATTAAGTTGTTAGCGAAAGCATTGGAAAGTGCCTCTCTTTGCGTTTT
CCCATTTCAATTCCACCTCCAAAACTAACTGCTTTTTGACGAATT
Found at i:24056 original size:16 final size:16
Alignment explanation
Indices: 24018--24106 Score: 112
Period size: 16 Copynumber: 5.8 Consensus size: 16
24008 TTGAGACTCA
24018 AGTCTCCAGTCTTCGT
1 AGTCTCCAGTCTTCGT
24034 --T-TCCAGTCTTCGT
1 AGTCTCCAGTCTTCGT
*
24047 AGTCTCCAGTCTTTGT
1 AGTCTCCAGTCTTCGT
* *
24063 GGTCTCCAGTCCTCGT
1 AGTCTCCAGTCTTCGT
* *
24079 AGTGTCCAGTCTTTGT
1 AGTCTCCAGTCTTCGT
24095 AGTCTCCAGTCT
1 AGTCTCCAGTCT
24107 CCGCTGGAAA
Statistics
Matches: 61, Mismatches: 9, Indels: 6
0.80 0.12 0.08
Matches are distributed among these distances:
13 12 0.20
14 1 0.02
15 1 0.02
16 47 0.77
ACGTcount: A:0.11, C:0.29, G:0.20, T:0.39
Consensus pattern (16 bp):
AGTCTCCAGTCTTCGT
Left flanking sequence: Indices 23518 -- 24017
CAAAAATTTGCCGGCCGTCGAAACACCCCGAGGCGTTTGAACCGGACCTGCCACTCCAAAGCGTC
GACCGCCAGGTCTGGAAGCTCCCAGTGGGAGGGCCAGCCTCCCGTGGGATGCCCGGGCCCGGCCA
CGGCCACCGTGCCCGGCACACACGTACAAATGTGGAGCCAGTGGGCTGCTACTCCCACGGCGAAC
CCGGTCACAGCAGCCACTACAAGAACATCGAGGATGGCGTCGCCATAGCTCACTGCAAACCACAC
GAACCCGTCGCTGTCCATGGCCGCTTTTCTGGGGAACCGGGTCCATATATAGTCGCCTATCGATC
TTGCATGAACAACGGTAGGCCCGGGTTTCTTTACACGGTATTTTTAAGGCATCCTGCTCGTCAAT
GCAGAAGTGGGCAAACAAATAAGGACAAGAAAAGCGAAGGGGGTGGACGAAGACAGGCGGAAATA
TAGAATTTGTCTACAGCCTCCCAGATTGAGGTAGATTGAGACTCA
Right flanking sequence: Indices 24107 -- 24606
CCGCTGGAAAATCTTGTCTGTGCGTTCTTTAGTGACGTCTTTGTTTTGGTTTTGACGTGGTTCCA
CTTGTTCGATTCTGGGACCTGCAGTTATGACGTATGCCATGGCTTGATGAGGGCTTAGGGATTAC
AAAGTCCGTCCCCACACCAGCCGCATTCTGCTGTGGCTATTTTCCTACTTTTCTGCTTTCTTTCA
CACCAGCACGGCTGACTCTGTCCACCACCCTCGGATCGCAGGTGTTGCATCAAGCCAAGACTGGA
ATACTGTACTGGGGTGCTGGATACTGGGATAATTTACTGATACTTTGCTAGGATTTGCTCTATAA
AAAACGGAATATTTACCACTGGAATTAAGTTGTTAGCGAAAGCATTGGAAAGTGCCTCTCTTTGC
GTTTTCCCATTTCAATTCCACCTCCAAAACTAACTGCTTTTTGACGAATTTCACTTAAAAATCCG
CTATTAGCTATTCTATAATTCTAGTCAGTTCATATCTCCGTTACA
Found at i:25002 original size:40 final size:40
Alignment explanation
Indices: 24951--25029 Score: 158
Period size: 40 Copynumber: 2.0 Consensus size: 40
24941 ACCACAAATT
24951 AAACTCACAATGTGTCTCAACTGCCTCATATTAACCACTA
1 AAACTCACAATGTGTCTCAACTGCCTCATATTAACCACTA
24991 AAACTCACAATGTGTCTCAACTGCCTCATATTAACCACT
1 AAACTCACAATGTGTCTCAACTGCCTCATATTAACCACT
25030 TCAACCCAAC
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 39 1.00
ACGTcount: A:0.34, C:0.30, G:0.08, T:0.28
Consensus pattern (40 bp):
AAACTCACAATGTGTCTCAACTGCCTCATATTAACCACTA
Left flanking sequence: Indices 24451 -- 24950
TGGAATTAAGTTGTTAGCGAAAGCATTGGAAAGTGCCTCTCTTTGCGTTTTCCCATTTCAATTCC
ACCTCCAAAACTAACTGCTTTTTGACGAATTTCACTTAAAAATCCGCTATTAGCTATTCTATAAT
TCTAGTCAGTTCATATCTCCGTTACATATTTAATAATCGTAATTCAGGAGTACCTAGTAATCTAC
ATATTCACCATATTACAAGAGATTCCGTATCAATAAGAGAACTCAATTAAGAAATAAAGAATCAA
AACTACTACTTTAAATCTCATTTTCCAGTTATCTGGGAACCAATATACATCTTTTTTGCATCTTG
TTTATTGAACCCTTACCCATACTCCACAACTTCCCTGCTCTTAGAACCTCTTGAATTCGCCGCTT
CTCTACTCTTGCCGAAGAGCTAATTGCCTCAGGATTAAACCTGAGATCAGCTTTTACTACAATCC
ACACTTGCGACTCAAGTCCTTACTGGTTCATAGTAACCACAAATT
Right flanking sequence: Indices 25030 -- 25529
TCAACCCAACGAGTCTCACAACACCCTTTAGTAACCCCTACAACCCAATGTGTCTCACATCAGCC
TCATACCACTACAACAATTGTGTCTCTATCCCATACTTCTATAAATACTAAGCGTTCTTCCAGAT
CCCCGCCGAGTAGTGCTTGACAAACGCCAACGGATCGTCAATCTTGCCGTCCTTGGGGATGGCCA
CCTCCAGGGCAAACAGCTTGATGGGCAACACCAAGATGTCCAGCACGAGCTTCGGCTTCTTCAAC
CCGTGGAAGTCCTTCCACAGCATCGCCTGGAACACCAGCGAGAGCACCCAGTCGTTGAAGTAGTG
GAACACCACGTCGGTCCAGAGCCCGGCCCCCGTCCACTTGGAGATCTCCAACTGCTTTTCGTTGG
CGTTCCCGGGCAACGTCAACCGGTCGTCGGGGTTGGGCTGGGCCCGCGCCCGCCGCTGGGTCAGC
TCGACGATCTGGGCAATGGCCTCGCGGAGAATGGGGTGGCCGGGC
Found at i:27301 original size:32 final size:33
Alignment explanation
Indices: 27235--27437 Score: 211
Period size: 32 Copynumber: 6.1 Consensus size: 33
27225 CAAATCCAAT
27235 CTACTAAACCAACCAAATGCTCTCCATTCATATA
1 CTACTAAACCAACCAAATGCTCT-CATTCATATA
*
27269 CTATTAAACCAACCAAATGCTCT-ATTCATATA
1 CTACTAAACCAACCAAATGCTCTCATTCATATA
* * *
27301 CCACTGAACCAACCAAAAT-CTCTTCTTTCATATA
1 CTACTAAACCAACC-AAATGCTC-TCATTCATATA
27335 CTACTAAACCAACCAAATGCTCT-ATTCATATA
1 CTACTAAACCAACCAAATGCTCTCATTCATATA
* * *
27367 CTACTCAA-C--CCATATGCTCTTTCATTCATACA
1 CTACTAAACCAACCAAATGCTC--TCATTCATATA
* * *
27399 CTACTAATCCAACCAATATGCTCTCTATTCGTTTA
1 CTACTAAACCAACCAA-ATGCTCTC-ATTCATATA
27434 CTAC
1 CTAC
27438 CCCTGTTCTA
Statistics
Matches: 140, Mismatches: 17, Indels: 23
0.78 0.09 0.13
Matches are distributed among these distances:
29 9 0.06
31 2 0.01
32 52 0.37
33 11 0.08
34 47 0.34
35 13 0.09
36 6 0.04
ACGTcount: A:0.35, C:0.31, G:0.03, T:0.31
Consensus pattern (33 bp):
CTACTAAACCAACCAAATGCTCTCATTCATATA
Left flanking sequence: Indices 26735 -- 27234
TATTGTGGCTGGTAGATGAAATTCGAGTAAAAAGACGGGAATGTGACGAGAAGGGCCTAGACCAA
ACGGTGTAGCGGTAGACAAGAGGAAGGTAGGTTAAAAAAACTAAAATGAAGTTTATAATTGTTTC
TACCCCGTGTAGACCCCTCTTTGAGCACGCCTAAACATAGTCCGGCTTTGTGGCCCGCCAAGACT
AGGTTGGTCGAGATGGCTTAGCGGTTTACGGAGGTGCTTGGAACCCCTGGGCGGTCACGGCAACA
ATGGGTGGCGATGTGCTTTGATCACAATAGGAGGGTATATAGGCGTGGCTAAGGATATTAGCCGA
GTGGTGGAGCGAAATACGAGATCTGGGAGAAGGAAGTGTGAACCGAGCAATACTTGATTGAGCGA
TTCAACCCGTTTGAGCCAGTACCAACCGTTTGAACTGATAACAACCCGATTGAACCAAAACCAAC
CCGATTGGATGTGCAGTAGGGATACCACCAAGTCCCAAATCCAAT
Right flanking sequence: Indices 27438 -- 27937
CCCTGTTCTACTCAAACTTGATCTCGTTGACGAGCGTCCCAATCGACTCGATCTCCACCTCGACC
TTGTTGCCGTCTCTCAACCACTTGGGCGGGCTGAACGACATACCCACCCCCTCGGGAGTACCGGT
CATAATCACCGTGCCCTGCTCGAGCGTCGTCCCCTGGGACAAAAACTCGATGATCTGGGCCACCG
AGAACAACAAGTCCAGGGTCGAGCTCAGCTGGCGCACCTCACCGTTGACTCTGGTCTCGATCTTG
AGGTTCAGCGAGTCAATGCCCCGCACCAACTGCGGCCCCAACGGAGCGTAGTTGTCAAACAGCTT
CGAGAAGTTCCACTGGGGAACCCCACCCGCGTGGGCCGGGTCCATCTGCCAGGTGCGGGCCAGGA
TGTCGTTGCCCACCGTGTACGCCAACACGTGGTCCAACGCGTCCGCAGCCTTGATGTTCTTGCCC
GTTTTGCCAATCACCACGCAGAGCTCGCCCTCGTAGTCCACCTGG
Found at i:27316 original size:66 final size:66
Alignment explanation
Indices: 27241--27422 Score: 237
Period size: 66 Copynumber: 2.8 Consensus size: 66
27231 CAATCTACTA
* *
27241 AACCAACCAAATGCTCTCCATTCATATACTATTAAACCAACCAAATGCTCTATTCATATACCACT
1 AACCAACCAAATGCTCTTCATTCATATACTACTAAACCAACCAAATGCTCTATTCATATACCACT
*
27306 G
66 C
* *
27307 AACCAACCAAAAT-CTCTTCTTTCATATACTACTAAACCAACCAAATGCTCTATTCATATACTAC
1 AACCAACC-AAATGCTCTTCATTCATATACTACTAAACCAACCAAATGCTCTATTCATATACCAC
27371 TC
65 TC
* * *
27373 AA-C--CCATATGCTCTTTCATTCATACACTACTAATCCAACCAATATGCTCT
1 AACCAACCAAATGCTC-TTCATTCATATACTACTAAACCAACCAA-ATGCTCT
27423 CTATTCGTTT
Statistics
Matches: 103, Mismatches: 9, Indels: 9
0.85 0.07 0.07
Matches are distributed among these distances:
62 3 0.03
63 5 0.05
64 25 0.24
65 8 0.08
66 58 0.56
67 4 0.04
ACGTcount: A:0.36, C:0.31, G:0.03, T:0.30
Consensus pattern (66 bp):
AACCAACCAAATGCTCTTCATTCATATACTACTAAACCAACCAAATGCTCTATTCATATACCACT
C
Left flanking sequence: Indices 26741 -- 27240
GGCTGGTAGATGAAATTCGAGTAAAAAGACGGGAATGTGACGAGAAGGGCCTAGACCAAACGGTG
TAGCGGTAGACAAGAGGAAGGTAGGTTAAAAAAACTAAAATGAAGTTTATAATTGTTTCTACCCC
GTGTAGACCCCTCTTTGAGCACGCCTAAACATAGTCCGGCTTTGTGGCCCGCCAAGACTAGGTTG
GTCGAGATGGCTTAGCGGTTTACGGAGGTGCTTGGAACCCCTGGGCGGTCACGGCAACAATGGGT
GGCGATGTGCTTTGATCACAATAGGAGGGTATATAGGCGTGGCTAAGGATATTAGCCGAGTGGTG
GAGCGAAATACGAGATCTGGGAGAAGGAAGTGTGAACCGAGCAATACTTGATTGAGCGATTCAAC
CCGTTTGAGCCAGTACCAACCGTTTGAACTGATAACAACCCGATTGAACCAAAACCAACCCGATT
GGATGTGCAGTAGGGATACCACCAAGTCCCAAATCCAATCTACTA
Right flanking sequence: Indices 27423 -- 27922
CTATTCGTTTACTACCCCTGTTCTACTCAAACTTGATCTCGTTGACGAGCGTCCCAATCGACTCG
ATCTCCACCTCGACCTTGTTGCCGTCTCTCAACCACTTGGGCGGGCTGAACGACATACCCACCCC
CTCGGGAGTACCGGTCATAATCACCGTGCCCTGCTCGAGCGTCGTCCCCTGGGACAAAAACTCGA
TGATCTGGGCCACCGAGAACAACAAGTCCAGGGTCGAGCTCAGCTGGCGCACCTCACCGTTGACT
CTGGTCTCGATCTTGAGGTTCAGCGAGTCAATGCCCCGCACCAACTGCGGCCCCAACGGAGCGTA
GTTGTCAAACAGCTTCGAGAAGTTCCACTGGGGAACCCCACCCGCGTGGGCCGGGTCCATCTGCC
AGGTGCGGGCCAGGATGTCGTTGCCCACCGTGTACGCCAACACGTGGTCCAACGCGTCCGCAGCC
TTGATGTTCTTGCCCGTTTTGCCAATCACCACGCAGAGCTCGCCC
Found at i:27383 original size:29 final size:30
Alignment explanation
Indices: 27235--27391 Score: 138
Period size: 34 Copynumber: 4.9 Consensus size: 30
27225 CAAATCCAAT
27235 CTACTAAACCAACCAAATGCTCTCCATTCATATA
1 CTACTAAACC-ACCAAATGCTCT---TTCATATA
*
27269 CTATTAAACCAACCAAATGCTCTATTCATATA
1 CTACTAAACC-ACCAAATGCTCT-TTCATATA
* * *
27301 CCACTGAACCAACCAAAATCTCTTCTTTCATATA
1 CTACTAAACC-ACC-AAAT-GC-TCTTTCATATA
27335 CTACTAAACCAACCAAATGCTCTATTCATATA
1 CTACTAAACC-ACCAAATGCTCT-TTCATATA
* *
27367 CTACTCAA-C-CCATATGCTCTTTCAT
1 CTACTAAACCACCAAATGCTCTTTCAT
27392 TCATACACTA
Statistics
Matches: 109, Mismatches: 10, Indels: 14
0.82 0.08 0.11
Matches are distributed among these distances:
28 5 0.05
29 10 0.09
31 4 0.04
32 36 0.33
33 8 0.07
34 43 0.39
35 3 0.03
ACGTcount: A:0.36, C:0.31, G:0.03, T:0.30
Consensus pattern (30 bp):
CTACTAAACCACCAAATGCTCTTTCATATA
Left flanking sequence: Indices 26735 -- 27234
TATTGTGGCTGGTAGATGAAATTCGAGTAAAAAGACGGGAATGTGACGAGAAGGGCCTAGACCAA
ACGGTGTAGCGGTAGACAAGAGGAAGGTAGGTTAAAAAAACTAAAATGAAGTTTATAATTGTTTC
TACCCCGTGTAGACCCCTCTTTGAGCACGCCTAAACATAGTCCGGCTTTGTGGCCCGCCAAGACT
AGGTTGGTCGAGATGGCTTAGCGGTTTACGGAGGTGCTTGGAACCCCTGGGCGGTCACGGCAACA
ATGGGTGGCGATGTGCTTTGATCACAATAGGAGGGTATATAGGCGTGGCTAAGGATATTAGCCGA
GTGGTGGAGCGAAATACGAGATCTGGGAGAAGGAAGTGTGAACCGAGCAATACTTGATTGAGCGA
TTCAACCCGTTTGAGCCAGTACCAACCGTTTGAACTGATAACAACCCGATTGAACCAAAACCAAC
CCGATTGGATGTGCAGTAGGGATACCACCAAGTCCCAAATCCAAT
Right flanking sequence: Indices 27392 -- 27891
TCATACACTACTAATCCAACCAATATGCTCTCTATTCGTTTACTACCCCTGTTCTACTCAAACTT
GATCTCGTTGACGAGCGTCCCAATCGACTCGATCTCCACCTCGACCTTGTTGCCGTCTCTCAACC
ACTTGGGCGGGCTGAACGACATACCCACCCCCTCGGGAGTACCGGTCATAATCACCGTGCCCTGC
TCGAGCGTCGTCCCCTGGGACAAAAACTCGATGATCTGGGCCACCGAGAACAACAAGTCCAGGGT
CGAGCTCAGCTGGCGCACCTCACCGTTGACTCTGGTCTCGATCTTGAGGTTCAGCGAGTCAATGC
CCCGCACCAACTGCGGCCCCAACGGAGCGTAGTTGTCAAACAGCTTCGAGAAGTTCCACTGGGGA
ACCCCACCCGCGTGGGCCGGGTCCATCTGCCAGGTGCGGGCCAGGATGTCGTTGCCCACCGTGTA
CGCCAACACGTGGTCCAACGCGTCCGCAGCCTTGATGTTCTTGCC
Found at i:31791 original size:31 final size:31
Alignment explanation
Indices: 31753--31947 Score: 152
Period size: 31 Copynumber: 6.5 Consensus size: 31
31743 GTACATGCGA
* *
31753 ATTGGCCACTGTCGATGTAGCCAATGTGACC
1 ATTGGCCACTGTCGAAGTAGCCCATGTGACC
* * * *
31784 ATTGGCCATTG-CCAGAGTAGCCCATGCGAAC
1 ATTGGCCACTGTCGA-AGTAGCCCATGTGACC
* * * * *
31815 ATTGGCCACTG-CCATAGTAGCCGAAGCGAAC
1 ATTGGCCACTGTCGA-AGTAGCCCATGTGACC
*
31846 ATTGGCCACTGTAGAAGTAGCCCATGTGACC
1 ATTGGCCACTGTCGAAGTAGCCCATGTGACC
* * *
31877 ATT-G--ACCGTCGAACTAACCCATGTGACC
1 ATTGGCCACTGTCGAAGTAGCCCATGTGACC
* ** *
31905 ATTGG-CACTGTCGAACTAAACCATTTGACC
1 ATTGGCCACTGTCGAAGTAGCCCATGTGACC
31935 ATTGG-CACTGTCG
1 ATTGGCCACTGTCG
31948 GGCCCATTCG
Statistics
Matches: 137, Mismatches: 23, Indels: 9
0.81 0.14 0.05
Matches are distributed among these distances:
28 23 0.17
29 1 0.01
30 37 0.27
31 75 0.55
32 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.24, T:0.23
Consensus pattern (31 bp):
ATTGGCCACTGTCGAAGTAGCCCATGTGACC
Left flanking sequence: Indices 31253 -- 31752
AGAGGTTAAGGCACTCGGTGCTTGATTTAGCGTTTGAGATTGTTTTAGAGCTCTAATTCAGGGTT
AGGATTTTCACCTGCCTTTTTGGTACCTGACTAACAATAGGACAATAGCACTGGGACAAGATTGC
TGGCGGCAAATGCGGGTTGAGATATGCTTTTGACTACGCTGGATGGGGTCACGCCAGCGCAAACG
GAGTTATGGAGGAGATAGGAGGTAGGGTTTGAGTGACGGGTGTAACATAGTGGGAGCAAAAAATG
CATATCGGGGTTAGAACATCGATAAGAGATAAGTGCCTTGAAATTGGAGGAAGCTGGATACGAAA
CATGGGCTAATTCACGGAAGTTCCCAGCCAAGATGATTAGTTAATCAAGCGTAGTCAGGCGGGAG
ATTGTAAGTTTATTTAGCGTGGTCAGGCGGGGGAAACCAAGAGCGTGTATTTACGAAACGTCGAG
CATGTTAGACGACGTCGCGAACACCTAAAAATAGAGTACATGCGA
Right flanking sequence: Indices 31948 -- 32447
GGCCCATTCGACCATTGACAGTGTCGGAACCCACGTAATCATCGGCATTGTCGGCCTGAGCCATT
TCGTATTTCGTCGGCGTTTATTGTGTGTCCAGGGACCGATGCCACAAACAGCATGGGTATTATTC
AGACACCAGACACTCAAAAATTCTAAGCTACTCTATTTCGTCTCCGCACGCTGCACCCCGGTGGC
CAGGGCCTTGGAGTCGTTCAAGTTGATCGGGTTGATCTCCTCCTCGAGCACCATCAGCTCGGGCC
GCAGCATGGGCAGGTACTGGATGCGCTCGTTCTGGAGCTCGGCAATCTCCTTCTTCAACTTGGCC
ACCTCCTTCTCAAACCGCTTGCCAAACACATCGATGTAGTAGGTGGCCCCGTTGTAGCAGGCCCA
GGCATAGACAAAAAACACAAACAACCCACACACGTGCTTGTACTTGAACCAGATGGGACACGGCA
ACATCGTGAGCATCTGGTAGCCAAACTGGATCAACGTGAACGCAC
Found at i:31920 original size:30 final size:30
Alignment explanation
Indices: 31845--31947 Score: 129
Period size: 30 Copynumber: 3.5 Consensus size: 30
31835 CCGAAGCGAA
* * *
31845 CATTGGCCACTGTAGAAGTAGCCCATGTGAC
1 CATTGG-CACTGTCGAACTAACCCATGTGAC
*
31876 CATT-G-ACCGTCGAACTAACCCATGTGAC
1 CATTGGCACTGTCGAACTAACCCATGTGAC
* *
31904 CATTGGCACTGTCGAACTAAACCATTTGAC
1 CATTGGCACTGTCGAACTAACCCATGTGAC
31934 CATTGGCACTGTCG
1 CATTGGCACTGTCG
31948 GGCCCATTCG
Statistics
Matches: 63, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
28 23 0.37
29 1 0.02
30 35 0.56
31 4 0.06
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.24
Consensus pattern (30 bp):
CATTGGCACTGTCGAACTAACCCATGTGAC
Left flanking sequence: Indices 31345 -- 31844
TGACTAACAATAGGACAATAGCACTGGGACAAGATTGCTGGCGGCAAATGCGGGTTGAGATATGC
TTTTGACTACGCTGGATGGGGTCACGCCAGCGCAAACGGAGTTATGGAGGAGATAGGAGGTAGGG
TTTGAGTGACGGGTGTAACATAGTGGGAGCAAAAAATGCATATCGGGGTTAGAACATCGATAAGA
GATAAGTGCCTTGAAATTGGAGGAAGCTGGATACGAAACATGGGCTAATTCACGGAAGTTCCCAG
CCAAGATGATTAGTTAATCAAGCGTAGTCAGGCGGGAGATTGTAAGTTTATTTAGCGTGGTCAGG
CGGGGGAAACCAAGAGCGTGTATTTACGAAACGTCGAGCATGTTAGACGACGTCGCGAACACCTA
AAAATAGAGTACATGCGAATTGGCCACTGTCGATGTAGCCAATGTGACCATTGGCCATTGCCAGA
GTAGCCCATGCGAACATTGGCCACTGCCATAGTAGCCGAAGCGAA
Right flanking sequence: Indices 31948 -- 32447
GGCCCATTCGACCATTGACAGTGTCGGAACCCACGTAATCATCGGCATTGTCGGCCTGAGCCATT
TCGTATTTCGTCGGCGTTTATTGTGTGTCCAGGGACCGATGCCACAAACAGCATGGGTATTATTC
AGACACCAGACACTCAAAAATTCTAAGCTACTCTATTTCGTCTCCGCACGCTGCACCCCGGTGGC
CAGGGCCTTGGAGTCGTTCAAGTTGATCGGGTTGATCTCCTCCTCGAGCACCATCAGCTCGGGCC
GCAGCATGGGCAGGTACTGGATGCGCTCGTTCTGGAGCTCGGCAATCTCCTTCTTCAACTTGGCC
ACCTCCTTCTCAAACCGCTTGCCAAACACATCGATGTAGTAGGTGGCCCCGTTGTAGCAGGCCCA
GGCATAGACAAAAAACACAAACAACCCACACACGTGCTTGTACTTGAACCAGATGGGACACGGCA
ACATCGTGAGCATCTGGTAGCCAAACTGGATCAACGTGAACGCAC
Found at i:31961 original size:26 final size:26
Alignment explanation
Indices: 31925--31974 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
31915 TCGAACTAAA
* *
31925 CCATTTGACCATTGGCACTGTCGGGC
1 CCATTCGACCATTGACACTGTCGGGC
*
31951 CCATTCGACCATTGACAGTGTCGG
1 CCATTCGACCATTGACACTGTCGG
31975 AACCCACGTA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.18, C:0.30, G:0.26, T:0.26
Consensus pattern (26 bp):
CCATTCGACCATTGACACTGTCGGGC
Left flanking sequence: Indices 31425 -- 31924
ATGGGGTCACGCCAGCGCAAACGGAGTTATGGAGGAGATAGGAGGTAGGGTTTGAGTGACGGGTG
TAACATAGTGGGAGCAAAAAATGCATATCGGGGTTAGAACATCGATAAGAGATAAGTGCCTTGAA
ATTGGAGGAAGCTGGATACGAAACATGGGCTAATTCACGGAAGTTCCCAGCCAAGATGATTAGTT
AATCAAGCGTAGTCAGGCGGGAGATTGTAAGTTTATTTAGCGTGGTCAGGCGGGGGAAACCAAGA
GCGTGTATTTACGAAACGTCGAGCATGTTAGACGACGTCGCGAACACCTAAAAATAGAGTACATG
CGAATTGGCCACTGTCGATGTAGCCAATGTGACCATTGGCCATTGCCAGAGTAGCCCATGCGAAC
ATTGGCCACTGCCATAGTAGCCGAAGCGAACATTGGCCACTGTAGAAGTAGCCCATGTGACCATT
GACCGTCGAACTAACCCATGTGACCATTGGCACTGTCGAACTAAA
Right flanking sequence: Indices 31975 -- 32474
AACCCACGTAATCATCGGCATTGTCGGCCTGAGCCATTTCGTATTTCGTCGGCGTTTATTGTGTG
TCCAGGGACCGATGCCACAAACAGCATGGGTATTATTCAGACACCAGACACTCAAAAATTCTAAG
CTACTCTATTTCGTCTCCGCACGCTGCACCCCGGTGGCCAGGGCCTTGGAGTCGTTCAAGTTGAT
CGGGTTGATCTCCTCCTCGAGCACCATCAGCTCGGGCCGCAGCATGGGCAGGTACTGGATGCGCT
CGTTCTGGAGCTCGGCAATCTCCTTCTTCAACTTGGCCACCTCCTTCTCAAACCGCTTGCCAAAC
ACATCGATGTAGTAGGTGGCCCCGTTGTAGCAGGCCCAGGCATAGACAAAAAACACAAACAACCC
ACACACGTGCTTGTACTTGAACCAGATGGGACACGGCAACATCGTGAGCATCTGGTAGCCAAACT
GGATCAACGTGAACGCACCAATCTGCATCCAGTTGTACGGCAACC
Found at i:34260 original size:19 final size:19
Alignment explanation
Indices: 34236--34319 Score: 98
Period size: 19 Copynumber: 4.4 Consensus size: 19
34226 TTTCATCTTC
34236 CTTCTTCACATTCTCTCTA
1 CTTCTTCACATTCTCTCTA
*
34255 CTTCTTCATCTTTC-CTCTA
1 CTTCTTCA-CATTCTCTCTA
**
34274 CTTCTTCGTATTCTCTCTA
1 CTTCTTCACATTCTCTCTA
* *
34293 TTTCTTCAGATTCTCTCTA
1 CTTCTTCACATTCTCTCTA
34312 CTTTCTTC
1 C-TTCTTC
34320 TTCATTCTAC
Statistics
Matches: 54, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
18 3 0.06
19 41 0.76
20 10 0.19
ACGTcount: A:0.12, C:0.33, G:0.02, T:0.52
Consensus pattern (19 bp):
CTTCTTCACATTCTCTCTA
Left flanking sequence: Indices 33736 -- 34235
GGCCAGCGCAGGCCTCGCTTAGCTCCGGGGTCACTCAGAAAAAGTCCGAGGTAACAATGACGATG
AGATGGCGATGGGAGAGGACAACAAAGAAAGGGATTAGAGGTGAGTGAATAGAAAGTGTGGGAAT
TGAAGCGCAGAGCCGTCTGGAGCTCCATTGGCCCTCCGTTTCCTCGTCTGTTGCTTGCTTCTCGA
CATACGTCACATGTGGCGTATGTTCTTTGCATACGCACGGCTGGGACCGATGACAGCCAGTCACG
GGCGCGACATGGGCAGTTTGTGTTGAGACACGCCCAAAGTACCCCATCGCCACAAAAGTGTATTC
GTGACCCCGACCAGAATGTCCCAATGCGTCAGCTGGACGAGCAACTGACAGAAAACGGTAGCAAT
GGCTGCAACTGCATGCGAAAGCAAAGATAATGTGAGATAGCGTATTGCAGCCAAATAACAACTCG
AGCAATTTCAGCTAGCTATAGCTTGAGGTGTGACTTTTCATCTTC
Right flanking sequence: Indices 34320 -- 34819
TTCATTCTACCTCTACTTTCACCCTTTTCAATCGGTTTTCGAACAAACTTACCGTAGTTTTAAAA
TTATTTCTTCGATATTTGGCGAACAGTTCCAGTGGGCTGAAACATTTTGTACTTATTTTGATATC
AGATATATCTTCATTTTCTAAATGCAAAACCCATTTTTATATTTAAGGTCAACTGTATTAGTAAA
TTTGGATTTATATGTCATCTATTTATATGTCATCTACTTCTTTATCTTTTCTCTACTGTCATCTT
TATCTTCCTCTACTTCCTTCTTCCCCTCCCTCTACTTCTTCTCTCTACATCTCTCCATTATAACC
TTCATTACTAGTCATTCTATGCATCATTAAGCCTTCTATTACCATGGTGGCCCGGCTAAAGCGAC
ACCAAGTGGCGCTGCATCGCCTCAAAATTATACATCTTCTTGTTGTTCTTGCCCTCGTCGACAAA
CGGGTGCTCCTGGTTGTAGTTGTAGCACTCCAAGATCGCATCGCA
Found at i:34311 original size:38 final size:38
Alignment explanation
Indices: 34236--34337 Score: 98
Period size: 38 Copynumber: 2.6 Consensus size: 38
34226 TTTCATCTTC
**
34236 CTTCTTCACATTCTCTCTACTTCTTCATCTTTCCTCTA
1 CTTCTTCACATTCTCTCTACTTCTTCAGATTTCCTCTA
** *
34274 CTTCTTCGTATTCTCTCTATTTCTTCAGA-TTCTCTCTA
1 CTTCTTCACATTCTCTCTACTTCTTCAGATTTC-CTCTA
*
34312 CTTTCTTCTTCATTCTACCTCTACTT
1 C-TTCTTC-ACATTCT--CTCTACTT
34338 TCACCCTTTT
Statistics
Matches: 51, Mismatches: 8, Indels: 6
0.78 0.12 0.09
Matches are distributed among these distances:
37 3 0.06
38 30 0.59
39 6 0.12
40 5 0.10
42 7 0.14
ACGTcount: A:0.13, C:0.33, G:0.02, T:0.52
Consensus pattern (38 bp):
CTTCTTCACATTCTCTCTACTTCTTCAGATTTCCTCTA
Left flanking sequence: Indices 33736 -- 34235
GGCCAGCGCAGGCCTCGCTTAGCTCCGGGGTCACTCAGAAAAAGTCCGAGGTAACAATGACGATG
AGATGGCGATGGGAGAGGACAACAAAGAAAGGGATTAGAGGTGAGTGAATAGAAAGTGTGGGAAT
TGAAGCGCAGAGCCGTCTGGAGCTCCATTGGCCCTCCGTTTCCTCGTCTGTTGCTTGCTTCTCGA
CATACGTCACATGTGGCGTATGTTCTTTGCATACGCACGGCTGGGACCGATGACAGCCAGTCACG
GGCGCGACATGGGCAGTTTGTGTTGAGACACGCCCAAAGTACCCCATCGCCACAAAAGTGTATTC
GTGACCCCGACCAGAATGTCCCAATGCGTCAGCTGGACGAGCAACTGACAGAAAACGGTAGCAAT
GGCTGCAACTGCATGCGAAAGCAAAGATAATGTGAGATAGCGTATTGCAGCCAAATAACAACTCG
AGCAATTTCAGCTAGCTATAGCTTGAGGTGTGACTTTTCATCTTC
Right flanking sequence: Indices 34338 -- 34837
TCACCCTTTTCAATCGGTTTTCGAACAAACTTACCGTAGTTTTAAAATTATTTCTTCGATATTTG
GCGAACAGTTCCAGTGGGCTGAAACATTTTGTACTTATTTTGATATCAGATATATCTTCATTTTC
TAAATGCAAAACCCATTTTTATATTTAAGGTCAACTGTATTAGTAAATTTGGATTTATATGTCAT
CTATTTATATGTCATCTACTTCTTTATCTTTTCTCTACTGTCATCTTTATCTTCCTCTACTTCCT
TCTTCCCCTCCCTCTACTTCTTCTCTCTACATCTCTCCATTATAACCTTCATTACTAGTCATTCT
ATGCATCATTAAGCCTTCTATTACCATGGTGGCCCGGCTAAAGCGACACCAAGTGGCGCTGCATC
GCCTCAAAATTATACATCTTCTTGTTGTTCTTGCCCTCGTCGACAAACGGGTGCTCCTGGTTGTA
GTTGTAGCACTCCAAGATCGCATCGCACACCCGGTGCACCAGCTC
Found at i:34323 original size:23 final size:22
Alignment explanation
Indices: 34244--34339 Score: 68
Period size: 19 Copynumber: 4.8 Consensus size: 22
34234 TCCTTCTTCA
*
34244 CATTCT-CTCTAC-TTCTTCAT
1 CATTCTACTCTACTTTCTTCTT
* *
34264 C-TT-TCCTCTAC-TTCTTCGT
1 CATTCTACTCTACTTTCTTCTT
*
34283 -ATTCT-CTCTA-TTTCTTC-A
1 CATTCTACTCTACTTTCTTCTT
*
34301 GATTCT-CTCTACTTTCTTCTT
1 CATTCTACTCTACTTTCTTCTT
34322 CATTCTACCTCTACTTTC
1 CATTCTA-CTCTACTTTC
34340 ACCCTTTTCA
Statistics
Matches: 63, Mismatches: 4, Indels: 15
0.77 0.05 0.18
Matches are distributed among these distances:
18 1 0.02
19 38 0.60
20 9 0.14
21 5 0.08
23 10 0.16
ACGTcount: A:0.12, C:0.33, G:0.02, T:0.52
Consensus pattern (22 bp):
CATTCTACTCTACTTTCTTCTT
Left flanking sequence: Indices 33744 -- 34243
CAGGCCTCGCTTAGCTCCGGGGTCACTCAGAAAAAGTCCGAGGTAACAATGACGATGAGATGGCG
ATGGGAGAGGACAACAAAGAAAGGGATTAGAGGTGAGTGAATAGAAAGTGTGGGAATTGAAGCGC
AGAGCCGTCTGGAGCTCCATTGGCCCTCCGTTTCCTCGTCTGTTGCTTGCTTCTCGACATACGTC
ACATGTGGCGTATGTTCTTTGCATACGCACGGCTGGGACCGATGACAGCCAGTCACGGGCGCGAC
ATGGGCAGTTTGTGTTGAGACACGCCCAAAGTACCCCATCGCCACAAAAGTGTATTCGTGACCCC
GACCAGAATGTCCCAATGCGTCAGCTGGACGAGCAACTGACAGAAAACGGTAGCAATGGCTGCAA
CTGCATGCGAAAGCAAAGATAATGTGAGATAGCGTATTGCAGCCAAATAACAACTCGAGCAATTT
CAGCTAGCTATAGCTTGAGGTGTGACTTTTCATCTTCCTTCTTCA
Right flanking sequence: Indices 34340 -- 34839
ACCCTTTTCAATCGGTTTTCGAACAAACTTACCGTAGTTTTAAAATTATTTCTTCGATATTTGGC
GAACAGTTCCAGTGGGCTGAAACATTTTGTACTTATTTTGATATCAGATATATCTTCATTTTCTA
AATGCAAAACCCATTTTTATATTTAAGGTCAACTGTATTAGTAAATTTGGATTTATATGTCATCT
ATTTATATGTCATCTACTTCTTTATCTTTTCTCTACTGTCATCTTTATCTTCCTCTACTTCCTTC
TTCCCCTCCCTCTACTTCTTCTCTCTACATCTCTCCATTATAACCTTCATTACTAGTCATTCTAT
GCATCATTAAGCCTTCTATTACCATGGTGGCCCGGCTAAAGCGACACCAAGTGGCGCTGCATCGC
CTCAAAATTATACATCTTCTTGTTGTTCTTGCCCTCGTCGACAAACGGGTGCTCCTGGTTGTAGT
TGTAGCACTCCAAGATCGCATCGCACACCCGGTGCACCAGCTCAA
Found at i:34540 original size:15 final size:15
Alignment explanation
Indices: 34520--34550 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
34510 GTAAATTTGG
34520 ATTTATATGTCATCT
1 ATTTATATGTCATCT
34535 ATTTATATGTCATCT
1 ATTTATATGTCATCT
34550 A
1 A
34551 CTTCTTTATC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.29, C:0.13, G:0.06, T:0.52
Consensus pattern (15 bp):
ATTTATATGTCATCT
Left flanking sequence: Indices 34020 -- 34519
GAGACACGCCCAAAGTACCCCATCGCCACAAAAGTGTATTCGTGACCCCGACCAGAATGTCCCAA
TGCGTCAGCTGGACGAGCAACTGACAGAAAACGGTAGCAATGGCTGCAACTGCATGCGAAAGCAA
AGATAATGTGAGATAGCGTATTGCAGCCAAATAACAACTCGAGCAATTTCAGCTAGCTATAGCTT
GAGGTGTGACTTTTCATCTTCCTTCTTCACATTCTCTCTACTTCTTCATCTTTCCTCTACTTCTT
CGTATTCTCTCTATTTCTTCAGATTCTCTCTACTTTCTTCTTCATTCTACCTCTACTTTCACCCT
TTTCAATCGGTTTTCGAACAAACTTACCGTAGTTTTAAAATTATTTCTTCGATATTTGGCGAACA
GTTCCAGTGGGCTGAAACATTTTGTACTTATTTTGATATCAGATATATCTTCATTTTCTAAATGC
AAAACCCATTTTTATATTTAAGGTCAACTGTATTAGTAAATTTGG
Right flanking sequence: Indices 34551 -- 35050
CTTCTTTATCTTTTCTCTACTGTCATCTTTATCTTCCTCTACTTCCTTCTTCCCCTCCCTCTACT
TCTTCTCTCTACATCTCTCCATTATAACCTTCATTACTAGTCATTCTATGCATCATTAAGCCTTC
TATTACCATGGTGGCCCGGCTAAAGCGACACCAAGTGGCGCTGCATCGCCTCAAAATTATACATC
TTCTTGTTGTTCTTGCCCTCGTCGACAAACGGGTGCTCCTGGTTGTAGTTGTAGCACTCCAAGAT
CGCATCGCACACCCGGTGCACCAGCTCAAGCAGCAACTGGAAGTGGAACGCAATCCGGCCCCCCA
TAAGCTTGACCCCGTGCTTGTGGCCCATCTCCACAAGGTACCCTGCATCCATCCCGTTGCGCTTG
AGGTCAATGAACACGAAATTGGTGTCGACAGGCCCCTCCAAGGCAATCCCGTGGTCGGTGCAGAA
CTTGCCCACAATCAGCGCATACTTGTGCGCCTGCTTGATCTTGTC
Found at i:34601 original size:22 final size:23
Alignment explanation
Indices: 34551--34601 Score: 61
Period size: 22 Copynumber: 2.3 Consensus size: 23
34541 ATGTCATCTA
*
34551 CTTCTTTATCTTTTCTCTACTGT
1 CTTCTTTATCTTTCCTCTACTGT
*
34574 CATCTTTATC-TTCCTCTACT-T
1 CTTCTTTATCTTTCCTCTACTGT
34595 CCTTCTT
1 -CTTCTT
34602 CCCCTCCCTC
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
21 1 0.04
22 14 0.58
23 9 0.38
ACGTcount: A:0.10, C:0.31, G:0.02, T:0.57
Consensus pattern (23 bp):
CTTCTTTATCTTTCCTCTACTGT
Left flanking sequence: Indices 34051 -- 34550
AAGTGTATTCGTGACCCCGACCAGAATGTCCCAATGCGTCAGCTGGACGAGCAACTGACAGAAAA
CGGTAGCAATGGCTGCAACTGCATGCGAAAGCAAAGATAATGTGAGATAGCGTATTGCAGCCAAA
TAACAACTCGAGCAATTTCAGCTAGCTATAGCTTGAGGTGTGACTTTTCATCTTCCTTCTTCACA
TTCTCTCTACTTCTTCATCTTTCCTCTACTTCTTCGTATTCTCTCTATTTCTTCAGATTCTCTCT
ACTTTCTTCTTCATTCTACCTCTACTTTCACCCTTTTCAATCGGTTTTCGAACAAACTTACCGTA
GTTTTAAAATTATTTCTTCGATATTTGGCGAACAGTTCCAGTGGGCTGAAACATTTTGTACTTAT
TTTGATATCAGATATATCTTCATTTTCTAAATGCAAAACCCATTTTTATATTTAAGGTCAACTGT
ATTAGTAAATTTGGATTTATATGTCATCTATTTATATGTCATCTA
Right flanking sequence: Indices 34602 -- 35101
CCCCTCCCTCTACTTCTTCTCTCTACATCTCTCCATTATAACCTTCATTACTAGTCATTCTATGC
ATCATTAAGCCTTCTATTACCATGGTGGCCCGGCTAAAGCGACACCAAGTGGCGCTGCATCGCCT
CAAAATTATACATCTTCTTGTTGTTCTTGCCCTCGTCGACAAACGGGTGCTCCTGGTTGTAGTTG
TAGCACTCCAAGATCGCATCGCACACCCGGTGCACCAGCTCAAGCAGCAACTGGAAGTGGAACGC
AATCCGGCCCCCCATAAGCTTGACCCCGTGCTTGTGGCCCATCTCCACAAGGTACCCTGCATCCA
TCCCGTTGCGCTTGAGGTCAATGAACACGAAATTGGTGTCGACAGGCCCCTCCAAGGCAATCCCG
TGGTCGGTGCAGAACTTGCCCACAATCAGCGCATACTTGTGCGCCTGCTTGATCTTGTCAAAGTT
GTCGTCAATGGCACAGATCGCCATCAGGGTGACAATGCCAGCTTG
Found at i:37073 original size:8 final size:8
Alignment explanation
Indices: 37043--37103 Score: 54
Period size: 8 Copynumber: 7.9 Consensus size: 8
37033 AAATAATGTG
37043 TGTATGAA
1 TGTATGAA
* *
37051 TGTGTTAA
1 TGTATGAA
37059 T-TATGAA
1 TGTATGAA
37066 TGTATGAA
1 TGTATGAA
* *
37074 TGTACGAT
1 TGTATGAA
*
37082 TGAATGAA
1 TGTATGAA
*
37090 TGTACGAA
1 TGTATGAA
37098 T-TATGA
1 TGTATGA
37104 TTATCTAGTA
Statistics
Matches: 40, Mismatches: 12, Indels: 3
0.73 0.22 0.05
Matches are distributed among these distances:
7 9 0.22
8 31 0.77
ACGTcount: A:0.36, C:0.03, G:0.23, T:0.38
Consensus pattern (8 bp):
TGTATGAA
Left flanking sequence: Indices 36543 -- 37042
AGGCTGACGGGGCTTACCACTAGTGACTCTTGATTACAAACAGCCGTTGCGATCGCGTGTTCTCG
CCGTGGGCTCACCCAACAGCCCAACACCCTGGGTCGCCTTGGTTGCCGTGGCTCTTAACGGCAAC
CCTATCGCTTTTTTTAGCAATTTTTCCGAAGAATAGGGGCGGCCGCCTGTTGCGAGCGCGGGAGC
AAGGGTCCCGTTGTGAGCCCGCGTCAGGTACCCAAACGGGCTGCGAGGGCGCGATCATCACCAGC
AATTGGCTGGGGGGACCGCAAGTGGCTCCGCAAGCGTGGTGGGTATTTAAGTAGTGGAGTCTCGT
AGGTGGCACGCGACATGAGTAACAAGCCCGTTTCAGATCCGCCTCGCAATTGGCTCAATGCCAAG
CCCATACCTACGAAACTTCGGAAACAGAGCGTAGGTGAGCTGTGGGCTAGTTCTGCCAGTGGCTC
GCCTCCAAGTGTGTTGCCTTTTGGCAACCGGTTTTAAATAATGTG
Right flanking sequence: Indices 37104 -- 37603
TTATCTAGTACTTAGAATTGGAGACAATTGAAGTGCTAGGGCTCTGAACTTTTGGGCAATGTAAA
GTATAAGTGTGTATTGTCAGCAGTACTGACTGAAACCCATTAAGCACATTAATTCCTCGAAACTC
TTGTTTCGCTACGTCCAAGAATCTCAATTTTTAGCCTGGCTTTGATCCCGTACTGGGCACAACGG
TACGACGTATGGCCATAAATTCCCCGTAAGACAAACATGGCAATACTATCCCCGTCCCACCGAGT
TCAGGCAATGGCCCAGACACAAACGAGCTGAAGAACACCTACCCAAAAGCAGCATCTGCTTATGG
CCACATTCTTGACTCTTTCCACGATCTCCAGAAGCGATAGTCGTTTTCACCAACTAGGCTCTATC
CACTTACTCCCTTCTACGCCCTACTCCCTTCTACGCCCTACTCCCTTCTACGCCCATACTCCTGT
CTACGTACTCCTGTTGGCTCCCAAGTACCTGGATATGCATCTAAC
Found at i:37520 original size:17 final size:17
Alignment explanation
Indices: 37498--37555 Score: 107
Period size: 17 Copynumber: 3.4 Consensus size: 17
37488 TCTATCCACT
37498 TACTCCCTTCTACGCCC
1 TACTCCCTTCTACGCCC
37515 TACTCCCTTCTACGCCC
1 TACTCCCTTCTACGCCC
37532 TACTCCCTTCTACGCCC
1 TACTCCCTTCTACGCCC
37549 ATACTCC
1 -TACTCC
37556 TGTCTACGTA
Statistics
Matches: 40, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
17 34 0.85
18 6 0.15
ACGTcount: A:0.14, C:0.52, G:0.05, T:0.29
Consensus pattern (17 bp):
TACTCCCTTCTACGCCC
Left flanking sequence: Indices 36998 -- 37497
GCCTCCAAGTGTGTTGCCTTTTGGCAACCGGTTTTAAATAATGTGTGTATGAATGTGTTAATTAT
GAATGTATGAATGTACGATTGAATGAATGTACGAATTATGATTATCTAGTACTTAGAATTGGAGA
CAATTGAAGTGCTAGGGCTCTGAACTTTTGGGCAATGTAAAGTATAAGTGTGTATTGTCAGCAGT
ACTGACTGAAACCCATTAAGCACATTAATTCCTCGAAACTCTTGTTTCGCTACGTCCAAGAATCT
CAATTTTTAGCCTGGCTTTGATCCCGTACTGGGCACAACGGTACGACGTATGGCCATAAATTCCC
CGTAAGACAAACATGGCAATACTATCCCCGTCCCACCGAGTTCAGGCAATGGCCCAGACACAAAC
GAGCTGAAGAACACCTACCCAAAAGCAGCATCTGCTTATGGCCACATTCTTGACTCTTTCCACGA
TCTCCAGAAGCGATAGTCGTTTTCACCAACTAGGCTCTATCCACT
Right flanking sequence: Indices 37556 -- 38055
TGTCTACGTACTCCTGTTGGCTCCCAAGTACCTGGATATGCATCTAACCAAATACGGTAGCCATC
CAACTACGAGGTAGTTACAGGAATGTAAACCTTATTGGTTACATAAAATACTTCCCCGGATACTG
TTAAACTACACAGAATAGAGTCTCCCGACTCTTGGGATCTCCATCGATTTCCATTTTAACCACAT
TTCGTACCCTTCGATCTGAGTGAGAAATCCACCATGGCTAAGAACGACTCGAAATTCACCAACAG
TACCTTCAGCCCCTTGGCTACTGACCCTGAAGTCGGGTCGCAACAACACCCTTTTACGCTTCACC
CCTTCAACCACCTCCATCCTACTTCTTTATTGTCTATAAATCCTCTTTCTCCTCCTTGCCAAACG
GCGCAAAGTCGCTCCGAATGTCATGCTTCCACCCCGAGTTCACACTGAAATTGCGGCTGTGCAGC
GCCGTCCGCTGCTCCTCGCTGGCCCAGATGTTCGTCAGCCCCGTG
Found at i:37541 original size:34 final size:35
Alignment explanation
Indices: 37498--37563 Score: 109
Period size: 34 Copynumber: 1.9 Consensus size: 35
37488 TCTATCCACT
37498 TACTCCCTTCTACGCCC-TACTCCCT-TCTACGCCC
1 TACTCCCTTCTACGCCCATACT-CCTGTCTACGCCC
37532 TACTCCCTTCTACGCCCATACTCCTGTCTACG
1 TACTCCCTTCTACGCCCATACTCCTGTCTACG
37564 TACTCCTGTT
Statistics
Matches: 30, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
34 20 0.67
35 10 0.33
ACGTcount: A:0.14, C:0.48, G:0.08, T:0.30
Consensus pattern (35 bp):
TACTCCCTTCTACGCCCATACTCCTGTCTACGCCC
Left flanking sequence: Indices 36998 -- 37497
GCCTCCAAGTGTGTTGCCTTTTGGCAACCGGTTTTAAATAATGTGTGTATGAATGTGTTAATTAT
GAATGTATGAATGTACGATTGAATGAATGTACGAATTATGATTATCTAGTACTTAGAATTGGAGA
CAATTGAAGTGCTAGGGCTCTGAACTTTTGGGCAATGTAAAGTATAAGTGTGTATTGTCAGCAGT
ACTGACTGAAACCCATTAAGCACATTAATTCCTCGAAACTCTTGTTTCGCTACGTCCAAGAATCT
CAATTTTTAGCCTGGCTTTGATCCCGTACTGGGCACAACGGTACGACGTATGGCCATAAATTCCC
CGTAAGACAAACATGGCAATACTATCCCCGTCCCACCGAGTTCAGGCAATGGCCCAGACACAAAC
GAGCTGAAGAACACCTACCCAAAAGCAGCATCTGCTTATGGCCACATTCTTGACTCTTTCCACGA
TCTCCAGAAGCGATAGTCGTTTTCACCAACTAGGCTCTATCCACT
Right flanking sequence: Indices 37564 -- 38063
TACTCCTGTTGGCTCCCAAGTACCTGGATATGCATCTAACCAAATACGGTAGCCATCCAACTACG
AGGTAGTTACAGGAATGTAAACCTTATTGGTTACATAAAATACTTCCCCGGATACTGTTAAACTA
CACAGAATAGAGTCTCCCGACTCTTGGGATCTCCATCGATTTCCATTTTAACCACATTTCGTACC
CTTCGATCTGAGTGAGAAATCCACCATGGCTAAGAACGACTCGAAATTCACCAACAGTACCTTCA
GCCCCTTGGCTACTGACCCTGAAGTCGGGTCGCAACAACACCCTTTTACGCTTCACCCCTTCAAC
CACCTCCATCCTACTTCTTTATTGTCTATAAATCCTCTTTCTCCTCCTTGCCAAACGGCGCAAAG
TCGCTCCGAATGTCATGCTTCCACCCCGAGTTCACACTGAAATTGCGGCTGTGCAGCGCCGTCCG
CTGCTCCTCGCTGGCCCAGATGTTCGTCAGCCCCGTGTTGACCGC
Found at i:38789 original size:33 final size:33
Alignment explanation
Indices: 38752--38841 Score: 108
Period size: 33 Copynumber: 2.7 Consensus size: 33
38742 GGAGGCCACG
* * * *
38752 GGCTCGAACTGGGTGGGTTCGAACAGCGACTTT
1 GGCTCAAACTGGGTAGGCTCAAACAGCGACTTT
*
38785 GGCTCAAACTGGTTAGGCTCAAACAGCGACTTT
1 GGCTCAAACTGGGTAGGCTCAAACAGCGACTTT
* **
38818 GGCTCATACTGCTTAGGCTCAAAC
1 GGCTCAAACTGGGTAGGCTCAAAC
38842 TGGTTAGGCT
Statistics
Matches: 50, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 50 1.00
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.24
Consensus pattern (33 bp):
GGCTCAAACTGGGTAGGCTCAAACAGCGACTTT
Left flanking sequence: Indices 38252 -- 38751
GCGCCAGCGGCTGCGGGTACGGCCGGGCCAAAAGGTCCTGGTCCAACTGGATCAGGTCGAGCAGG
TCCGGGATGGGCTGGGCGAGCGCGGGCGAGAGCTTCATCGCCTCGTGCACGCTCAGAATGGTCCC
CAGCGCCAGCCGGACCCCCGTGGGGCCCAGCGCCAGCCTGACACCCGCGGTCCCGATGGGAATCT
GGGCAATCGGCGACCGGGGCCGCGAGTTGATCGCCTGGAGCACCTCGGCAGACGCGAGCGACAGC
TGCTGGGCCATCAACGGGGTGCCGTCCTGGCCGTAGACCCAGTCGTAGCCCGAAAACTGCGACCC
CACGGGCGACACCACCGAGGGAGCCAACCCGAGCGACAGGAGCCCGTCCACCAGCTCGAACCGCG
TGTGGTTGGACACCGAGATGGGTGCCAGCCGCTGGGGCTCCAAGTAGCTCAGCGAGCCCAGCGGC
ACCGCCAGCATGCTCGGAGCAAACGGGCTGGGCCCGGAGGCCACG
Right flanking sequence: Indices 38842 -- 39341
TGGTTAGGCTCAAACTTGGGCTCAAACGACTTTGGCTCAAACAGGGTGTTAGGGTCATATCTCTG
ACCCACCGGGTCAAACTGCGCGGAGGCCATCGGCGCCACGGGGTCGTAGCCCGTGCCCAGCGTGT
CAAACACCCCCAGACTGTTGGCGTCGAAGCTGAAACTGGCGTCGTAGCCCGCGTTCTGCCCGTAC
ACCTCGTCGTAGCTCGCCACCCGCTTGCCCAGACCGTAGCCCTCGGGCGAAAGACCCTTCTGGTA
CTTTTTCTTGGGCAACGGGTCGCCAAAGTCGCAGCTGGCCTGGTAGTCGGTGATCTTTTGCGGGC
GGTACCCCGGGTCTCTGCTCGCCCGCGCCAACTCGAGGCTCTGGAAGATGGCCACGTACTTTTTG
ACCTCCTGGCGGTACACCCGGCGCCACTTCTCCTCGTCGGCCGCCACCTGGTCCGCCTGGTCGCC
CAACTCGGCCGCGTGGGCGATCCGGACTATGTCGCCGCCGTCGAG
Found at i:38805 original size:15 final size:15
Alignment explanation
Indices: 38785--38857 Score: 83
Period size: 15 Copynumber: 4.7 Consensus size: 15
38775 CAGCGACTTT
38785 GGCTCAAACTGGTTA
1 GGCTCAAACTGGTTA
* *
38800 GGCTCAAACAGCGACTTT
1 GGCTCAAACTG-G--TTA
* *
38818 GGCTCATACTGCTTA
1 GGCTCAAACTGGTTA
38833 GGCTCAAACTGGTTA
1 GGCTCAAACTGGTTA
38848 GGCTCAAACT
1 GGCTCAAACT
38858 TGGGCTCAAA
Statistics
Matches: 47, Mismatches: 8, Indels: 6
0.77 0.13 0.10
Matches are distributed among these distances:
15 35 0.74
16 1 0.02
18 11 0.23
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (15 bp):
GGCTCAAACTGGTTA
Left flanking sequence: Indices 38285 -- 38784
GGTCCTGGTCCAACTGGATCAGGTCGAGCAGGTCCGGGATGGGCTGGGCGAGCGCGGGCGAGAGC
TTCATCGCCTCGTGCACGCTCAGAATGGTCCCCAGCGCCAGCCGGACCCCCGTGGGGCCCAGCGC
CAGCCTGACACCCGCGGTCCCGATGGGAATCTGGGCAATCGGCGACCGGGGCCGCGAGTTGATCG
CCTGGAGCACCTCGGCAGACGCGAGCGACAGCTGCTGGGCCATCAACGGGGTGCCGTCCTGGCCG
TAGACCCAGTCGTAGCCCGAAAACTGCGACCCCACGGGCGACACCACCGAGGGAGCCAACCCGAG
CGACAGGAGCCCGTCCACCAGCTCGAACCGCGTGTGGTTGGACACCGAGATGGGTGCCAGCCGCT
GGGGCTCCAAGTAGCTCAGCGAGCCCAGCGGCACCGCCAGCATGCTCGGAGCAAACGGGCTGGGC
CCGGAGGCCACGGGCTCGAACTGGGTGGGTTCGAACAGCGACTTT
Right flanking sequence: Indices 38858 -- 39357
TGGGCTCAAACGACTTTGGCTCAAACAGGGTGTTAGGGTCATATCTCTGACCCACCGGGTCAAAC
TGCGCGGAGGCCATCGGCGCCACGGGGTCGTAGCCCGTGCCCAGCGTGTCAAACACCCCCAGACT
GTTGGCGTCGAAGCTGAAACTGGCGTCGTAGCCCGCGTTCTGCCCGTACACCTCGTCGTAGCTCG
CCACCCGCTTGCCCAGACCGTAGCCCTCGGGCGAAAGACCCTTCTGGTACTTTTTCTTGGGCAAC
GGGTCGCCAAAGTCGCAGCTGGCCTGGTAGTCGGTGATCTTTTGCGGGCGGTACCCCGGGTCTCT
GCTCGCCCGCGCCAACTCGAGGCTCTGGAAGATGGCCACGTACTTTTTGACCTCCTGGCGGTACA
CCCGGCGCCACTTCTCCTCGTCGGCCGCCACCTGGTCCGCCTGGTCGCCCAACTCGGCCGCGTGG
GCGATCCGGACTATGTCGCCGCCGTCGAGCGCCTGGCGGATCGCC
Found at i:38823 original size:18 final size:18
Alignment explanation
Indices: 38773--38823 Score: 63
Period size: 15 Copynumber: 3.0 Consensus size: 18
38763 GGTGGGTTCG
38773 AACAGCGACTTTGGCTCA
1 AACAGCGACTTTGGCTCA
* *
38791 AACTG-G--TTAGGCTCA
1 AACAGCGACTTTGGCTCA
38806 AACAGCGACTTTGGCTCA
1 AACAGCGACTTTGGCTCA
38824 TACTGCTTAG
Statistics
Matches: 26, Mismatches: 4, Indels: 6
0.72 0.11 0.17
Matches are distributed among these distances:
15 12 0.46
16 1 0.04
17 1 0.04
18 12 0.46
ACGTcount: A:0.27, C:0.25, G:0.24, T:0.24
Consensus pattern (18 bp):
AACAGCGACTTTGGCTCA
Left flanking sequence: Indices 38273 -- 38772
GCCGGGCCAAAAGGTCCTGGTCCAACTGGATCAGGTCGAGCAGGTCCGGGATGGGCTGGGCGAGC
GCGGGCGAGAGCTTCATCGCCTCGTGCACGCTCAGAATGGTCCCCAGCGCCAGCCGGACCCCCGT
GGGGCCCAGCGCCAGCCTGACACCCGCGGTCCCGATGGGAATCTGGGCAATCGGCGACCGGGGCC
GCGAGTTGATCGCCTGGAGCACCTCGGCAGACGCGAGCGACAGCTGCTGGGCCATCAACGGGGTG
CCGTCCTGGCCGTAGACCCAGTCGTAGCCCGAAAACTGCGACCCCACGGGCGACACCACCGAGGG
AGCCAACCCGAGCGACAGGAGCCCGTCCACCAGCTCGAACCGCGTGTGGTTGGACACCGAGATGG
GTGCCAGCCGCTGGGGCTCCAAGTAGCTCAGCGAGCCCAGCGGCACCGCCAGCATGCTCGGAGCA
AACGGGCTGGGCCCGGAGGCCACGGGCTCGAACTGGGTGGGTTCG
Right flanking sequence: Indices 38824 -- 39323
TACTGCTTAGGCTCAAACTGGTTAGGCTCAAACTTGGGCTCAAACGACTTTGGCTCAAACAGGGT
GTTAGGGTCATATCTCTGACCCACCGGGTCAAACTGCGCGGAGGCCATCGGCGCCACGGGGTCGT
AGCCCGTGCCCAGCGTGTCAAACACCCCCAGACTGTTGGCGTCGAAGCTGAAACTGGCGTCGTAG
CCCGCGTTCTGCCCGTACACCTCGTCGTAGCTCGCCACCCGCTTGCCCAGACCGTAGCCCTCGGG
CGAAAGACCCTTCTGGTACTTTTTCTTGGGCAACGGGTCGCCAAAGTCGCAGCTGGCCTGGTAGT
CGGTGATCTTTTGCGGGCGGTACCCCGGGTCTCTGCTCGCCCGCGCCAACTCGAGGCTCTGGAAG
ATGGCCACGTACTTTTTGACCTCCTGGCGGTACACCCGGCGCCACTTCTCCTCGTCGGCCGCCAC
CTGGTCCGCCTGGTCGCCCAACTCGGCCGCGTGGGCGATCCGGAC
Found at i:40568 original size:13 final size:13
Alignment explanation
Indices: 40552--40597 Score: 67
Period size: 13 Copynumber: 3.6 Consensus size: 13
40542 GTGGTGGGCT
40552 GTGGTGGGCTGTG
1 GTGGTGGGCTGTG
*
40565 GTGGTGGGCTATG
1 GTGGTGGGCTGTG
*
40578 GTGGTGGG-GGTG
1 GTGGTGGGCTGTG
40590 GTGGTGGG
1 GTGGTGGG
40598 GGTGGTTTTT
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
12 10 0.33
13 20 0.67
ACGTcount: A:0.02, C:0.04, G:0.65, T:0.28
Consensus pattern (13 bp):
GTGGTGGGCTGTG
Left flanking sequence: Indices 40052 -- 40551
CGGGCATCAGCTTCGTGCGGAAGCCCAGCACCCCGTTGACCGCCACCACCTCGACACACACCCGA
CGGTCCCGGGGCACGTTCCGGAGCCGGCACTGGCTCTTGCCGGCCACCGCGGCCACTTCGAGCCC
GTCCACAAGCACCACGTAGTACTGGTCGCCGCCAGAGACCTCCCAGTGCATCACCACGCCGTCGG
AGCCGATGGCATCTATGCAAACTTGGGGCATCGGTGGGAGATCGAGCCCGATGCCCAGGATATCC
GTCGGGAGCACAAGCAAACGGACTAGCCGGTACACTAGCCATGTGAGGGCAAGCCCCGTGGTCAC
CACCTCAAACATCGTGGGTGGGTGTGGCGTGCAAGACTCGCTGGAGAGACGACTGGTTTGTGTCT
CGGTTAGAGATCTTTTTTGACGTACCAGTCGCACGATCGATGTGGGGAGTTGGAAGGACGAGTGC
GAAGGGGGATTGTAGAGGGTGGTTTACTGCGGGCTGTGGTGGGCT
Right flanking sequence: Indices 40598 -- 41097
GGTGGTTTTTTAAACTGGTTTTTACCTGGTTTTTACCTGGTTTCTACGGGTGGTTTTTGGTTTTC
TACGCGTGTGTATAGGGCCGGTGTTTGGTCCGTGGTGGGCCCACTACTGCGAACGGTAGGGCTTA
GCACAGAGCCTCGGTTGTGCGTGGAAGGGGGTGCGGACGACGGCGAGGGTCGTGGGTCGCGTGGT
GTGGGGTTTTGCGACACTTGCGGCGGCACGCGTTGGGTGGAGGCGTGGGGTGTATGCGTAGGGTA
TAGGCGTGAGGCTATTGGTAGGGACAAGACGGTGAGAAAGGGGAGAATTTTGGGGAAACCGGGCG
AAAAAACGGGCGGAATAGGGTAATTAGGGGCAGAAGAAGAGAGAGGGGGCATCGAGTTGCGTGTT
TTGGTAGAAGGTGCTTGAGTTAGTTTATAGTAGGGCGTTGGTTGTCTTGGTGCATTTGCGCTATT
TTGGTCGCAGAGTGAGACCCAAGGCCACCGTGTAAGCGGAGACGA
Found at i:40581 original size:10 final size:10
Alignment explanation
Indices: 40537--40568 Score: 64
Period size: 10 Copynumber: 3.2 Consensus size: 10
40527 GGTTTACTGC
40537 GGGCTGTGGT
1 GGGCTGTGGT
40547 GGGCTGTGGT
1 GGGCTGTGGT
40557 GGGCTGTGGT
1 GGGCTGTGGT
40567 GG
1 GG
40569 TGGGCTATGG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 22 1.00
ACGTcount: A:0.00, C:0.09, G:0.62, T:0.28
Consensus pattern (10 bp):
GGGCTGTGGT
Left flanking sequence: Indices 40037 -- 40536
CGGGCTGGATGTACACGGGCATCAGCTTCGTGCGGAAGCCCAGCACCCCGTTGACCGCCACCACC
TCGACACACACCCGACGGTCCCGGGGCACGTTCCGGAGCCGGCACTGGCTCTTGCCGGCCACCGC
GGCCACTTCGAGCCCGTCCACAAGCACCACGTAGTACTGGTCGCCGCCAGAGACCTCCCAGTGCA
TCACCACGCCGTCGGAGCCGATGGCATCTATGCAAACTTGGGGCATCGGTGGGAGATCGAGCCCG
ATGCCCAGGATATCCGTCGGGAGCACAAGCAAACGGACTAGCCGGTACACTAGCCATGTGAGGGC
AAGCCCCGTGGTCACCACCTCAAACATCGTGGGTGGGTGTGGCGTGCAAGACTCGCTGGAGAGAC
GACTGGTTTGTGTCTCGGTTAGAGATCTTTTTTGACGTACCAGTCGCACGATCGATGTGGGGAGT
TGGAAGGACGAGTGCGAAGGGGGATTGTAGAGGGTGGTTTACTGC
Right flanking sequence: Indices 40569 -- 41068
TGGGCTATGGTGGTGGGGGTGGTGGTGGGGGTGGTTTTTTAAACTGGTTTTTACCTGGTTTTTAC
CTGGTTTCTACGGGTGGTTTTTGGTTTTCTACGCGTGTGTATAGGGCCGGTGTTTGGTCCGTGGT
GGGCCCACTACTGCGAACGGTAGGGCTTAGCACAGAGCCTCGGTTGTGCGTGGAAGGGGGTGCGG
ACGACGGCGAGGGTCGTGGGTCGCGTGGTGTGGGGTTTTGCGACACTTGCGGCGGCACGCGTTGG
GTGGAGGCGTGGGGTGTATGCGTAGGGTATAGGCGTGAGGCTATTGGTAGGGACAAGACGGTGAG
AAAGGGGAGAATTTTGGGGAAACCGGGCGAAAAAACGGGCGGAATAGGGTAATTAGGGGCAGAAG
AAGAGAGAGGGGGCATCGAGTTGCGTGTTTTGGTAGAAGGTGCTTGAGTTAGTTTATAGTAGGGC
GTTGGTTGTCTTGGTGCATTTGCGCTATTTTGGTCGCAGAGTGAG
Found at i:40626 original size:11 final size:11
Alignment explanation
Indices: 40612--40640 Score: 58
Period size: 11 Copynumber: 2.6 Consensus size: 11
40602 GTTTTTTAAA
40612 CTGGTTTTTAC
1 CTGGTTTTTAC
40623 CTGGTTTTTAC
1 CTGGTTTTTAC
40634 CTGGTTT
1 CTGGTTT
40641 CTACGGGTGG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.07, C:0.17, G:0.21, T:0.55
Consensus pattern (11 bp):
CTGGTTTTTAC
Left flanking sequence: Indices 40112 -- 40611
CCCGACGGTCCCGGGGCACGTTCCGGAGCCGGCACTGGCTCTTGCCGGCCACCGCGGCCACTTCG
AGCCCGTCCACAAGCACCACGTAGTACTGGTCGCCGCCAGAGACCTCCCAGTGCATCACCACGCC
GTCGGAGCCGATGGCATCTATGCAAACTTGGGGCATCGGTGGGAGATCGAGCCCGATGCCCAGGA
TATCCGTCGGGAGCACAAGCAAACGGACTAGCCGGTACACTAGCCATGTGAGGGCAAGCCCCGTG
GTCACCACCTCAAACATCGTGGGTGGGTGTGGCGTGCAAGACTCGCTGGAGAGACGACTGGTTTG
TGTCTCGGTTAGAGATCTTTTTTGACGTACCAGTCGCACGATCGATGTGGGGAGTTGGAAGGACG
AGTGCGAAGGGGGATTGTAGAGGGTGGTTTACTGCGGGCTGTGGTGGGCTGTGGTGGGCTGTGGT
GGTGGGCTATGGTGGTGGGGGTGGTGGTGGGGGTGGTTTTTTAAA
Right flanking sequence: Indices 40641 -- 41140
CTACGGGTGGTTTTTGGTTTTCTACGCGTGTGTATAGGGCCGGTGTTTGGTCCGTGGTGGGCCCA
CTACTGCGAACGGTAGGGCTTAGCACAGAGCCTCGGTTGTGCGTGGAAGGGGGTGCGGACGACGG
CGAGGGTCGTGGGTCGCGTGGTGTGGGGTTTTGCGACACTTGCGGCGGCACGCGTTGGGTGGAGG
CGTGGGGTGTATGCGTAGGGTATAGGCGTGAGGCTATTGGTAGGGACAAGACGGTGAGAAAGGGG
AGAATTTTGGGGAAACCGGGCGAAAAAACGGGCGGAATAGGGTAATTAGGGGCAGAAGAAGAGAG
AGGGGGCATCGAGTTGCGTGTTTTGGTAGAAGGTGCTTGAGTTAGTTTATAGTAGGGCGTTGGTT
GTCTTGGTGCATTTGCGCTATTTTGGTCGCAGAGTGAGACCCAAGGCCACCGTGTAAGCGGAGAC
GACCAGAGTGGGGGCGGGACGCTAGTCCATGCTAGCCACTCGCGC
Found at i:41429 original size:23 final size:24
Alignment explanation
Indices: 41369--41437 Score: 81
Period size: 23 Copynumber: 2.9 Consensus size: 24
41359 CGGACTGATT
*
41369 GAAGCTCATTCAGCTTAGACACA-CA
1 GAAGCTCAATCAG--TAGACACATCA
*
41394 AAAGC-CAATCAGTAGACACATC-
1 GAAGCTCAATCAGTAGACACATCA
41416 GAAGCTCAATCAGTAGACACAT
1 GAAGCTCAATCAGTAGACACAT
41438 GGTTGTTGTC
Statistics
Matches: 39, Mismatches: 3, Indels: 6
0.81 0.06 0.12
Matches are distributed among these distances:
22 12 0.31
23 17 0.44
24 6 0.15
25 4 0.10
ACGTcount: A:0.41, C:0.26, G:0.16, T:0.17
Consensus pattern (24 bp):
GAAGCTCAATCAGTAGACACATCA
Left flanking sequence: Indices 40869 -- 41368
CTATTGGTAGGGACAAGACGGTGAGAAAGGGGAGAATTTTGGGGAAACCGGGCGAAAAAACGGGC
GGAATAGGGTAATTAGGGGCAGAAGAAGAGAGAGGGGGCATCGAGTTGCGTGTTTTGGTAGAAGG
TGCTTGAGTTAGTTTATAGTAGGGCGTTGGTTGTCTTGGTGCATTTGCGCTATTTTGGTCGCAGA
GTGAGACCCAAGGCCACCGTGTAAGCGGAGACGACCAGAGTGGGGGCGGGACGCTAGTCCATGCT
AGCCACTCGCGCTCGCTAGCCACATCGCGCCTCATCACTGGTCTACTTGGTTCCTGACACAATGC
CAACCGTTGCCAAGATTTATGCAAAGTAAGCCCTATTGTCAGCAACGGAGATCGTAGACAGTGGT
GGATGGATGCCAAGAACCAGAACAGGCAATTGTGTGATCTAGGAAAGCGGGCTATTGGTTTGTTG
TATGTCAAATCTGGGTACATTCGTAAATTTTCAACCGGACTGATT
Right flanking sequence: Indices 41438 -- 41937
GGTTGTTGTCAACCATGATCGTTTGGTTGTCTCAAGTTCATCATCACCCCTTCAGCCACCCTACG
ATTTATCTTCACTTTGTAACCACCCTATCCGCCACAGTCCCTACAACATTAGTCAGCTGTGGTGG
GCCCCACTGTGGCAACCAGCCCCTAGTATAAAACGAGCCATCCTCAGTCTCTCCTACTCCCCAAC
TCTCTACTACCATGGCCACCTACCGCTCCGGCTACTCCGACATCTTCGAACCCGCGAACCTCCAC
TTGGCTGGGGGAAAGGTCGAAACTCTCGACATCGAAGAACACCGCAAAACGGTCAAGTACCCCCA
GTACCTCGTGCCCACCCCGAAAGACGAAGCAGGGAAGTTTCCCCGGATCGAGAACCCGGGCTGGC
AAAATAAAGATCGCGGTCACTTTGGCGACAGCTCCTTCAAGCACTTGTTCCCCAAGGGACAGGAT
GCGTACGCCAAGTTTGACTTGTCTCCCGACCTCGGTACTGAGATC
Found at i:49262 original size:12 final size:12
Alignment explanation
Indices: 49245--49274 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
49235 GCGACGGCAA
49245 CGCCAGCAGCGC
1 CGCCAGCAGCGC
*
49257 CGCCAGCAGGGC
1 CGCCAGCAGCGC
49269 CGCCAG
1 CGCCAG
49275 TTTCACAGGG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.17, C:0.47, G:0.37, T:0.00
Consensus pattern (12 bp):
CGCCAGCAGCGC
Left flanking sequence: Indices 48745 -- 49244
GAGAATGTGGTAGGTGTAGTGTAGAGTCATTTCTGACAATTGTGTAGTCAATGCTTTCTAAAGAG
TGCTTTGCAACCTGTCTCAGGCTGTGAAATCGGTTTTTGCTATTTTTGTACAGCCCGTTTAGCCG
CCGAATGAGGGCGGAAAGAGCCCCCCCAAACGGTGTAATTGGGACTGTAGCCCTTTTAAATCATC
TCCACAACTCGGAGGTACACATGTTCACCCAAACGTCCTACCTTTACACCCAATTTATGCCGTAT
CTCATCATTTCGTAAATACATTCGCTTAACCGAATCACTCCACTCATCGTTTCACCAAACACATA
GCTCTTGTCTTAAAATTCTCGCTTTCTCTGCTTCCCAATTGCTCCGCCCCCCACCTTCTAATTCC
CACCTTCTGCTTCCCATCTCTCACTCAATCCCTACCCTTTACTTATCTCATTTATTGTCACGATG
CAAATCAGTCTACAACTGGGCCACCAGCAGCTTGCGCGACGGCAA
Right flanking sequence: Indices 49275 -- 49774
TTTCACAGGGCTGCCCGGCTCCTCGGCCTGCTCCTCAAACAAGTGCACGTATTTCTGCACCTTGC
CCACCTTGATGTACTTGAGCCGCTTGTTGTCCTTGATGTACCGTGGCACCAGCGCCAGGTCGTGC
AAGGCCTCGTGGATCTCAAACTCGGCGAGCGCGGCGCTCATCAGCGTCCGCAACGGCCGCCGGGG
CAGTTTGAACAGCAGATTCCGCGTGAGCGGCTGCGACCGCGTCTGGGGCAGTGGCGGCACCGACA
CCGTGGGCAGCTGAGGCTTGGAGCTGTCGGTGGTGTTGTGGCGGGTGGTGGGACGCAACACCGAC
CGGCTGGGAAGCCGGAACAGCTGGCGGGTCGCCAGAGTCGGCGGTTCCAACGCCAGAGGATCGGC
CTTCGAGTTCAGCCGCGACCGGGCCCACGAGGGGACAAAGTCGTCGTCGTCGTCGGCTCCGGGGG
TCTGTGGAAGCCTCACCGGGCGCAACAGCTTGGTGGGCGTGCCTG
Found at i:50338 original size:21 final size:21
Alignment explanation
Indices: 50314--50391 Score: 81
Period size: 21 Copynumber: 3.9 Consensus size: 21
50304 TTGCTCGTGG
* *
50314 AGCTCGTGCGCTTGTAACCGT
1 AGCTCGTGCTCTTGTAGCCGT
* *
50335 AG--C-TGCTCTTTTAGCTGT
1 AGCTCGTGCTCTTGTAGCCGT
*
50353 AGCTCGTGCTCCTGTAGCCGT
1 AGCTCGTGCTCTTGTAGCCGT
*
50374 AGCTCGTGCTCTCGTAGC
1 AGCTCGTGCTCTTGTAGC
50392 GGCAGCCCCG
Statistics
Matches: 45, Mismatches: 9, Indels: 6
0.75 0.15 0.10
Matches are distributed among these distances:
18 13 0.29
19 1 0.02
20 1 0.02
21 30 0.67
ACGTcount: A:0.12, C:0.29, G:0.27, T:0.32
Consensus pattern (21 bp):
AGCTCGTGCTCTTGTAGCCGT
Left flanking sequence: Indices 49814 -- 50313
AGCCCGGAGCGACGTCGTCGTAGTTGCACTCGACCTCGTTCAAGTCGTCCAAGAGGAGGTACTCT
GGATGGTGCTTGACGGCAGCGGGAGCCGCGAGCGCGGGCGACAGCGTGTAGCTGTCGTTGTGGCG
CATGTTGGAGGGGTCGGCAATGAACGTCTGTTTCGGCAGCGGGAGAAGCGTCAGCACCAGTGACA
GCAGCGCCATCGGGGCTGGGGCCCGGGCGGGAGCTGGAGCAAGCACGGGTGCGGGGGCGAGGCCC
ACCAGTTTGTCTAACGGTGGGTTCTCGGGTGTCGTGAGAGGTTTGGAGGTGGGAGGAGAGTCTGT
GGTGGGAGGAGGTTTCAGGTGGTGTTTCAGAGTGTCGGAGTGGGGGGCGTCGTGTTTCAGAGTGT
CCGGGTGGGGGTGGTGGGGGGCATGTTTCAGCTCGTGTTTCAGAGGTGGCAAGTGACTTTGGGCT
GGTAGCTCGAAGCCTTGGACGGGCGGCTCGAGCTTTTGCTCGTGG
Right flanking sequence: Indices 50392 -- 50891
GGCAGCCCCGGCTGCTCGTGCTCCTGTCTCAGGTCGTGTCTCAGAAGCCCACCCTTGACATTCTC
GCGTTCCTCGTAGTCAAACGGATCAAACCCCACAAACACCTTGTCCAACGGGTCGTCGTCCCCCA
ACGTCAGGTCAGACATGTCGCGCGGCTCGTCGTCGTCACTGGGCGCCTCAGACCCGCTCAGGCAC
CCGTCCAACATCCACAACTCGGGGAAGTCGCTCCCGGCCGCCGGCGGCACGGGACTGCTCGCCAA
CGACGGCACTGGCAGCTCGGTGTCCATGTGGTGCAACTGGTTGGCAAACACCACCTCGATGTACG
CCAGAATCAGCGCCACCAACTCGGGATGCCACCCAGCCAAGAGGCTGTAGTGGTTGTCCTCGAGA
TACTGCACCCGCACAGCGTCTCCCACCACGAATTGGAGCACCTTGAGCGTGACCACCACCACAAA
CAGCTCCAGCTCGGGCAAGTCGTCGTGGCGGAACACGGCGTGGGC
Found at i:52325 original size:18 final size:18
Alignment explanation
Indices: 52302--52427 Score: 198
Period size: 18 Copynumber: 7.0 Consensus size: 18
52292 AGACTACTGA
* *
52302 GTGGACTACCCAGTCTGT
1 GTGGACCACCCAGTCTGC
52320 GTGGACCACCCAGTCTGC
1 GTGGACCACCCAGTCTGC
52338 GTGGACCACCCAGTCTGC
1 GTGGACCACCCAGTCTGC
52356 GTGGACCACCCAGTCTGC
1 GTGGACCACCCAGTCTGC
*
52374 GTGGACCACCCAGTCTGT
1 GTGGACCACCCAGTCTGC
* *
52392 GTGGATCACCCAGTCCGC
1 GTGGACCACCCAGTCTGC
*
52410 GTGTACCACCCAGTCTGC
1 GTGGACCACCCAGTCTGC
52428 TTGGTCCCAG
Statistics
Matches: 99, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 99 1.00
ACGTcount: A:0.17, C:0.37, G:0.27, T:0.20
Consensus pattern (18 bp):
GTGGACCACCCAGTCTGC
Left flanking sequence: Indices 51802 -- 52301
CATCGGCAACAACGACACGCCGCTCTACGAGCTCGAGTTTGCCAGTTTCAAGCTGGTGGGCGGGG
TGGGCCAGTTCCCCCCTAATGTCCGCGAGTTGTTGCCGTTCATAGCCAACCTGCTGTTGGACCTC
CTCGAGGAGCTCCAGTGGAGCGCGCCCCAGTTCTACTTGGGCAAGGTCGACCTGTTCTCCGGGTA
CCTGGTGGCGGGCTACATCACCCAGGGGAACGTGCGGTTGGTGTTGGTGTACGACAAGAGCGACG
ACGGGCTGATCCGCCAGTTCTTCTACGAGGTGAACGAGTTGTACGTCAAGTGCTTAATGAACCCG
TTCTACGCCGTCAACCAGCCGTTGACGTCGCCGGACTTTGACATGAAGGTGAAGCAGGTGGGGCG
CAAGTACTTGTAACCGCTGGCACGGTGAAGAGAGTAGCGAAGACATGGTGTGCTGTCGACTGGGA
AGGTGCGCACTGCTGGTTAGGTAGTCAACACTAGGAGACTACTGA
Right flanking sequence: Indices 52428 -- 52927
TTGGTCCCAGACCTACTCAAGGACATGGAAACTTATAGTTGAAGGAGAAATCATAGAATTAACAC
AACGATACCTTACACAAAGTTAAAATCATTTTGGATGGGGTAAGAAGCCACCCTCGAAGTAGACT
CCCTTGTGCGTGAACCCACCGCGGTTGTTCGGTGTGTTGGCAGCCACAGCACACTGGTCAAACAC
CTCGAGATTGATGATCCCGGTGTAGTTGTGAGACCCGCCACCTTGGAACCGTGGCCGCTTGAAGA
AAACCTTGCCGTAGCTCTGGCACCCGCGGGTCTCGGGGGTCTTTTTGTCTCCGTTGTACTTGTAG
TACTCGAGCCATTGGGCTGCCAGCCCCTTGAGACCACTCTCGCTGGTGTAGAACAGGGCAATGTA
GACCCGTGTTCCGTCGGGCTCCACCAAGGTGCCGACCCACCGGTGGCGGCCGCCCTCCGTGGCCA
CCAACTCCAGTTCGATCCTGTACCAGGTATCGAATCGCCACGGGT
Found at i:54434 original size:11 final size:11
Alignment explanation
Indices: 54420--54470 Score: 102
Period size: 11 Copynumber: 4.6 Consensus size: 11
54410 ACATTCTTGA
54420 CACATCACCAG
1 CACATCACCAG
54431 CACATCACCAG
1 CACATCACCAG
54442 CACATCACCAG
1 CACATCACCAG
54453 CACATCACCAG
1 CACATCACCAG
54464 CACATCA
1 CACATCA
54471 TTTGCACACG
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 40 1.00
ACGTcount: A:0.37, C:0.45, G:0.08, T:0.10
Consensus pattern (11 bp):
CACATCACCAG
Left flanking sequence: Indices 53920 -- 54419
ACCTGAGACTCCCGCTTCACCGACCTACCATATCCACATCAACAAGGACAAAGAGATTCATCTCC
TCACCCATCTTGTCCACGAAGTCAAGGCCCTCCACGCAACCCAGCAAAAGATCCACGCTGAGATC
ACAGACTTGAGACAACAAGTAAACCCTCCCAAGGATCACGAGGCCCTTCTGCAGCTGGAGAAGAC
TAGTGACAAAGCCAAACCTGCTGAAAAACTCCTGTATTACATGAATGCGTTGTTGCTTCTGATGC
TTGCCGTGATGCTCCTCATGGTTGCCGGGTTTGAGTATCTCAAGCGGTCAGAGCCCAAGACCCCG
GAAGCGCAGCTTTTACCGATTTAGCGCCGCAGCTGGATACAACAAATGAGATATGTTAACGATTA
TAACCTAAAAATAGATGATGAACAGATTTCTTACAACATTGCCCGTTAGTTTCGTTGATAAACAA
TTTGTCCCGTATTGAATCTATGGCACATTCATGACACATTCTTGA
Right flanking sequence: Indices 54471 -- 54970
TTTGCACACGAAGCATTGATTACCCCTTGAACATCAGCAAAACGTCAGTATAACACGGTAAAACA
TCACTAGAGCAGCAGTACAGCATCAGAACAACACCAAGATGAGCACAATATCAGAACATCACACT
TCATATTCAAAACTTGCCATACCACCGCAACACAGACCACAACTATAACACCACTATAACACCAC
TACAACACCACTTGAACACCACTTGAACACCACTAGAACCTCACAACCCCACAACACCACAACAA
AACCACTCATCACGCCTTATCCCTTCTTACTAAACTCTTTTTTCCTTCTTACGATTCTCTTTTCC
CTTTCTTTCTTCTCTTTTCCCTTTCTTTCTTCCTTTCTACTATATACATATCACCTACTTCTCCT
CGTCCTTGGCCTCCTCCTCCAACACCTTATCGGTGGCAATCGACCAGTTACCGTCAGCCCCCTGG
ACCAAGATCCCCTGGTCGCGCAAGGTGACAAACATGTCCTGGGGC
Found at i:54704 original size:11 final size:11
Alignment explanation
Indices: 54642--54704 Score: 81
Period size: 11 Copynumber: 5.7 Consensus size: 11
54632 ACAGACCACA
*
54642 ACTATAACACC
1 ACTAGAACACC
*
54653 ACTATAACACC
1 ACTAGAACACC
*
54664 ACTACAACACC
1 ACTAGAACACC
*
54675 ACTTGAACACC
1 ACTAGAACACC
*
54686 ACTTGAACACC
1 ACTAGAACACC
54697 ACTAGAAC
1 ACTAGAAC
54705 CTCACAACCC
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
11 48 1.00
ACGTcount: A:0.43, C:0.37, G:0.05, T:0.16
Consensus pattern (11 bp):
ACTAGAACACC
Left flanking sequence: Indices 54142 -- 54641
ACTCCTGTATTACATGAATGCGTTGTTGCTTCTGATGCTTGCCGTGATGCTCCTCATGGTTGCCG
GGTTTGAGTATCTCAAGCGGTCAGAGCCCAAGACCCCGGAAGCGCAGCTTTTACCGATTTAGCGC
CGCAGCTGGATACAACAAATGAGATATGTTAACGATTATAACCTAAAAATAGATGATGAACAGAT
TTCTTACAACATTGCCCGTTAGTTTCGTTGATAAACAATTTGTCCCGTATTGAATCTATGGCACA
TTCATGACACATTCTTGACACATCACCAGCACATCACCAGCACATCACCAGCACATCACCAGCAC
ATCATTTGCACACGAAGCATTGATTACCCCTTGAACATCAGCAAAACGTCAGTATAACACGGTAA
AACATCACTAGAGCAGCAGTACAGCATCAGAACAACACCAAGATGAGCACAATATCAGAACATCA
CACTTCATATTCAAAACTTGCCATACCACCGCAACACAGACCACA
Right flanking sequence: Indices 54705 -- 55204
CTCACAACCCCACAACACCACAACAAAACCACTCATCACGCCTTATCCCTTCTTACTAAACTCTT
TTTTCCTTCTTACGATTCTCTTTTCCCTTTCTTTCTTCTCTTTTCCCTTTCTTTCTTCCTTTCTA
CTATATACATATCACCTACTTCTCCTCGTCCTTGGCCTCCTCCTCCAACACCTTATCGGTGGCAA
TCGACCAGTTACCGTCAGCCCCCTGGACCAAGATCCCCTGGTCGCGCAAGGTGACAAACATGTCC
TGGGGCACCCACCCGCCGGTGGCAGCAAACGGCTGCGACCCAAGGTCCAACTGGTACTCCTCCAA
CCGCGTCAGAATGTCGGTGATCATGTCCTTGGTGTACTTGATGGGGAACTGCGGGTCCTCGGTGT
TGCAGAGCTGGTTGGCCACGTACAGCTCCCACATGGGCTGCAAGCTCACAATGGCGTTCTCGGCG
TACAAGTAGTCGCGGTCGTTCTTGATGTCAAGCACCGCGGTGTAC
Found at i:54808 original size:20 final size:20
Alignment explanation
Indices: 54785--54831 Score: 87
Period size: 20 Copynumber: 2.4 Consensus size: 20
54775 CTTCTTACGA
54785 TTCTCTTTTCCCTTTCTTTC
1 TTCTCTTTTCCCTTTCTTTC
54805 TTCTCTTTTCCCTTTCTTTC
1 TTCTCTTTTCCCTTTCTTTC
54825 TTC-CTTT
1 TTCTCTTT
54832 CTACTATATA
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
19 4 0.15
20 23 0.85
ACGTcount: A:0.00, C:0.34, G:0.00, T:0.66
Consensus pattern (20 bp):
TTCTCTTTTCCCTTTCTTTC
Left flanking sequence: Indices 54285 -- 54784
AACAAATGAGATATGTTAACGATTATAACCTAAAAATAGATGATGAACAGATTTCTTACAACATT
GCCCGTTAGTTTCGTTGATAAACAATTTGTCCCGTATTGAATCTATGGCACATTCATGACACATT
CTTGACACATCACCAGCACATCACCAGCACATCACCAGCACATCACCAGCACATCATTTGCACAC
GAAGCATTGATTACCCCTTGAACATCAGCAAAACGTCAGTATAACACGGTAAAACATCACTAGAG
CAGCAGTACAGCATCAGAACAACACCAAGATGAGCACAATATCAGAACATCACACTTCATATTCA
AAACTTGCCATACCACCGCAACACAGACCACAACTATAACACCACTATAACACCACTACAACACC
ACTTGAACACCACTTGAACACCACTAGAACCTCACAACCCCACAACACCACAACAAAACCACTCA
TCACGCCTTATCCCTTCTTACTAAACTCTTTTTTCCTTCTTACGA
Right flanking sequence: Indices 54832 -- 55331
CTACTATATACATATCACCTACTTCTCCTCGTCCTTGGCCTCCTCCTCCAACACCTTATCGGTGG
CAATCGACCAGTTACCGTCAGCCCCCTGGACCAAGATCCCCTGGTCGCGCAAGGTGACAAACATG
TCCTGGGGCACCCACCCGCCGGTGGCAGCAAACGGCTGCGACCCAAGGTCCAACTGGTACTCCTC
CAACCGCGTCAGAATGTCGGTGATCATGTCCTTGGTGTACTTGATGGGGAACTGCGGGTCCTCGG
TGTTGCAGAGCTGGTTGGCCACGTACAGCTCCCACATGGGCTGCAAGCTCACAATGGCGTTCTCG
GCGTACAAGTAGTCGCGGTCGTTCTTGATGTCAAGCACCGCGGTGTACGGCGCCTTGAGCGCCTT
GATGTGCGGCAGCGCCACCGCAATCAAGTCGTGGCGCCGCTGGTTCAACCCCACCTCCCACATGC
GCTCGTTGCGCGTCTTGAAGTACATGAACTTGTACTGGGCCTGCT
Found at i:56771 original size:9 final size:9
Alignment explanation
Indices: 56759--56805 Score: 51
Period size: 9 Copynumber: 5.1 Consensus size: 9
56749 AGTTTTCGGA
56759 GAAGGGTGG
1 GAAGGGTGG
56768 GAAGGGT-G
1 GAAGGGTGG
56776 GAAGGGTGG
1 GAAGGGTGG
*
56785 AAAGGGATGG
1 GAAGGG-TGG
*
56795 AAAGGGGTGG
1 GAA-GGGTGG
56805 G
1 G
56806 GGTGTGGTGT
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
8 8 0.24
9 13 0.39
10 9 0.27
11 3 0.09
ACGTcount: A:0.28, C:0.00, G:0.62, T:0.11
Consensus pattern (9 bp):
GAAGGGTGG
Left flanking sequence: Indices 56259 -- 56758
CGCCCTCGTTGAGGATGATCTTGTAGATGCGGTGGTGCTTGCCCTCGTGGATGGACGCAATCAGC
TTGAGCGACCCGCCGTGGGCGCCCACGAGCGCCTGGACGTTGCTGTCCAAGTAGCGGATCCCGGC
GTCGGCCCGAGGGGGCAAAAGGCCCTCCTGGCCCTTGAGCAGCTTCACCACGTCGGTGATGCCCT
CGATCAGGAACTTGGTGTTGCGCCGAGCCTTCTCAAGCTTGTCGTTGGTCAACCACAGGCCCCAG
GTGTACTCGAAGAACGAGGTGCGCTGGGGGTCGGCCTCGTCGTGGAGGCGGGTGAAAACTTCCTT
CGGGGCCTCGGAAACGAAGCGGCGGGCCACGAGGGAGGCAGCGGGAGCGGCCACACGGGTGCGGG
CGACTGCGTGGCGCGCGACACGGGCGGAGCGGGCTAGTCTGAGCATGGTGATGATGATTTTTCAG
CAAGCGCGAAAAGGAGCGAAAGGTGGAGAAGTCGGAGTTTTCGGA
Right flanking sequence: Indices 56806 -- 57305
GGTGTGGTGTTTCCAGATTTCTTGGTTGGAATAGGGGATGTGTGTGGTGGAGTTGAGAGATTGTG
ACGATGGTGATGGGTGGTGGAGATTATGTACGGTGATGTAAGGAAAAGGGATGAAGATGGGATGA
ATTGAGGGGGGAAGTGTGGATTGAATGAAATTGATAGTATGGTCTGGTGTTTTAGGAACAGTTGA
TGGATCGGATTTTGCTTGTATTCATCGTGTTTAACCTGCTATTCTCTTCTCGTTGGGGCGATTTG
TGTCAGCTGTCACGGCAAGGGTCTATTATTAGCACTGTGACATTGTGACAAGCCACACCGATGAC
CATTGGGTTATGCCAACCTGTTCAATGGAACTTTGTCACATTTACTACGCAATTGGACCACTTCA
ACGGTCATCTTCAATAGGTCATCGAAACTAGTTCGAACCAGTTCGAAACCAGTTCGAGGTAGTTA
AATAGTAATGAGTGTCAATACGGACTATTTTAAAACATAGACTGC
Found at i:56781 original size:17 final size:18
Alignment explanation
Indices: 56759--56796 Score: 60
Period size: 17 Copynumber: 2.2 Consensus size: 18
56749 AGTTTTCGGA
*
56759 GAAGGGTGGGAAGGG-TG
1 GAAGGGTGGAAAGGGATG
56776 GAAGGGTGGAAAGGGATG
1 GAAGGGTGGAAAGGGATG
56794 GAA
1 GAA
56797 AGGGGTGGGG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 14 0.74
18 5 0.26
ACGTcount: A:0.32, C:0.00, G:0.58, T:0.11
Consensus pattern (18 bp):
GAAGGGTGGAAAGGGATG
Left flanking sequence: Indices 56259 -- 56758
CGCCCTCGTTGAGGATGATCTTGTAGATGCGGTGGTGCTTGCCCTCGTGGATGGACGCAATCAGC
TTGAGCGACCCGCCGTGGGCGCCCACGAGCGCCTGGACGTTGCTGTCCAAGTAGCGGATCCCGGC
GTCGGCCCGAGGGGGCAAAAGGCCCTCCTGGCCCTTGAGCAGCTTCACCACGTCGGTGATGCCCT
CGATCAGGAACTTGGTGTTGCGCCGAGCCTTCTCAAGCTTGTCGTTGGTCAACCACAGGCCCCAG
GTGTACTCGAAGAACGAGGTGCGCTGGGGGTCGGCCTCGTCGTGGAGGCGGGTGAAAACTTCCTT
CGGGGCCTCGGAAACGAAGCGGCGGGCCACGAGGGAGGCAGCGGGAGCGGCCACACGGGTGCGGG
CGACTGCGTGGCGCGCGACACGGGCGGAGCGGGCTAGTCTGAGCATGGTGATGATGATTTTTCAG
CAAGCGCGAAAAGGAGCGAAAGGTGGAGAAGTCGGAGTTTTCGGA
Right flanking sequence: Indices 56797 -- 57296
AGGGGTGGGGGTGTGGTGTTTCCAGATTTCTTGGTTGGAATAGGGGATGTGTGTGGTGGAGTTGA
GAGATTGTGACGATGGTGATGGGTGGTGGAGATTATGTACGGTGATGTAAGGAAAAGGGATGAAG
ATGGGATGAATTGAGGGGGGAAGTGTGGATTGAATGAAATTGATAGTATGGTCTGGTGTTTTAGG
AACAGTTGATGGATCGGATTTTGCTTGTATTCATCGTGTTTAACCTGCTATTCTCTTCTCGTTGG
GGCGATTTGTGTCAGCTGTCACGGCAAGGGTCTATTATTAGCACTGTGACATTGTGACAAGCCAC
ACCGATGACCATTGGGTTATGCCAACCTGTTCAATGGAACTTTGTCACATTTACTACGCAATTGG
ACCACTTCAACGGTCATCTTCAATAGGTCATCGAAACTAGTTCGAACCAGTTCGAAACCAGTTCG
AGGTAGTTAAATAGTAATGAGTGTCAATACGGACTATTTTAAAAC
Found at i:57245 original size:11 final size:11
Alignment explanation
Indices: 57217--57252 Score: 56
Period size: 11 Copynumber: 3.4 Consensus size: 11
57207 CAATAGGTCA
*
57217 TCGAAACTAGT
1 TCGAAACCAGT
57228 TCG-AACCAGT
1 TCGAAACCAGT
57238 TCGAAACCAGT
1 TCGAAACCAGT
57249 TCGA
1 TCGA
57253 GGTAGTTAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
10 9 0.39
11 14 0.61
ACGTcount: A:0.33, C:0.25, G:0.19, T:0.22
Consensus pattern (11 bp):
TCGAAACCAGT
Left flanking sequence: Indices 56717 -- 57216
GCGCGAAAAGGAGCGAAAGGTGGAGAAGTCGGAGTTTTCGGAGAAGGGTGGGAAGGGTGGAAGGG
TGGAAAGGGATGGAAAGGGGTGGGGGTGTGGTGTTTCCAGATTTCTTGGTTGGAATAGGGGATGT
GTGTGGTGGAGTTGAGAGATTGTGACGATGGTGATGGGTGGTGGAGATTATGTACGGTGATGTAA
GGAAAAGGGATGAAGATGGGATGAATTGAGGGGGGAAGTGTGGATTGAATGAAATTGATAGTATG
GTCTGGTGTTTTAGGAACAGTTGATGGATCGGATTTTGCTTGTATTCATCGTGTTTAACCTGCTA
TTCTCTTCTCGTTGGGGCGATTTGTGTCAGCTGTCACGGCAAGGGTCTATTATTAGCACTGTGAC
ATTGTGACAAGCCACACCGATGACCATTGGGTTATGCCAACCTGTTCAATGGAACTTTGTCACAT
TTACTACGCAATTGGACCACTTCAACGGTCATCTTCAATAGGTCA
Right flanking sequence: Indices 57253 -- 57752
GGTAGTTAAATAGTAATGAGTGTCAATACGGACTATTTTAAAACATAGACTGCCTCATATGTTGG
CCAGAAAGTATACCAACTCCTGCTTTTACCCTTGGTTGGCGCACTGTGAAGCACGGCTGAAGTCG
AGATCGGCTACCCGCTAGACCTACCTCGATGTGATCAACTGTGCTCATGATGTCAAAACTCCACT
TACCGGACCCAATTGACGACCACCACTGGTCTCCTCGCCCCACTAAACACTCCTACACACCACAA
ACTAGATTCCACACAGCCACGCCCACGCTACCCCACATTTCGCCACGCGGTGACACCTAAATACG
ACCAAATACGACCCACCATCTCGATCGTACCATCACTCGGTCACGATCGGGCACGATCTGCTAGG
GTCCTGTTCCTGCGCCGAAGCCTGTCACCGTCACTGCCATGTAACAAACACATTCAACACGTTCG
CATGTCCCATAGCGAACCCACCTCTAGAACTCGCCTCTACTAGGA
Found at i:57758 original size:13 final size:14
Alignment explanation
Indices: 57742--57774 Score: 50
Period size: 15 Copynumber: 2.4 Consensus size: 14
57732 TAGAACTCGC
57742 CTCT-ACTAGGATA
1 CTCTCACTAGGATA
57755 CTCTCCACTAGGATA
1 CTCT-CACTAGGATA
57770 CTCTC
1 CTCTC
57775 CCCACTTCAG
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
13 4 0.22
14 1 0.06
15 13 0.72
ACGTcount: A:0.24, C:0.33, G:0.12, T:0.30
Consensus pattern (14 bp):
CTCTCACTAGGATA
Left flanking sequence: Indices 57242 -- 57741
AACCAGTTCGAGGTAGTTAAATAGTAATGAGTGTCAATACGGACTATTTTAAAACATAGACTGCC
TCATATGTTGGCCAGAAAGTATACCAACTCCTGCTTTTACCCTTGGTTGGCGCACTGTGAAGCAC
GGCTGAAGTCGAGATCGGCTACCCGCTAGACCTACCTCGATGTGATCAACTGTGCTCATGATGTC
AAAACTCCACTTACCGGACCCAATTGACGACCACCACTGGTCTCCTCGCCCCACTAAACACTCCT
ACACACCACAAACTAGATTCCACACAGCCACGCCCACGCTACCCCACATTTCGCCACGCGGTGAC
ACCTAAATACGACCAAATACGACCCACCATCTCGATCGTACCATCACTCGGTCACGATCGGGCAC
GATCTGCTAGGGTCCTGTTCCTGCGCCGAAGCCTGTCACCGTCACTGCCATGTAACAAACACATT
CAACACGTTCGCATGTCCCATAGCGAACCCACCTCTAGAACTCGC
Right flanking sequence: Indices 57775 -- 58274
CCCACTTCAGTCCTCTCCTTCACTAGGATACTATCCCCACCTCAGCCCACCCCAACCCTCCTGAA
ACAAGTTCATTACTATAAATAATGCACACTCAGCTGTTGTCCATGAGCTCGCCGGCCCGGTTCCC
GCCATGCTGTTCCCAGAGCCGCATCCGCTCCCCGAAGGCGATTTCCTCCCCGTGGTTGTCGCCAG
TGTCGCCGTCCTTCATCGCCGTGGTCAGCTGAAGACTGGTGGCCAGCTGAGCCACCCGGCTGTCG
TCGCTGGCCTGGCGTTTCAATAGTGCGGCAATGGTGTACTGGGAGGGGCCGTGGCGGTGCACGTT
GCGGCCCTCAATGCCGTCCTTGGTGGCCACCGTCGACTTGCACAGCATTGTCAGCGCCCGCAGCA
GCGGTCGCAGCGGCAGGCTGATTTCCATATCGTCGTCCATGGTGGTTAGATGATGCTACTGAAAT
GGTTGCGGTCATGATGTTGACGGTCGCCAAAAGAAACGAGAAAGA
Found at i:57766 original size:15 final size:15
Alignment explanation
Indices: 57746--57775 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
57736 ACTCGCCTCT
57746 ACTAGGATACTCTCC
1 ACTAGGATACTCTCC
57761 ACTAGGATACTCTCC
1 ACTAGGATACTCTCC
57776 CCACTTCAGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.27, C:0.33, G:0.13, T:0.27
Consensus pattern (15 bp):
ACTAGGATACTCTCC
Left flanking sequence: Indices 57246 -- 57745
AGTTCGAGGTAGTTAAATAGTAATGAGTGTCAATACGGACTATTTTAAAACATAGACTGCCTCAT
ATGTTGGCCAGAAAGTATACCAACTCCTGCTTTTACCCTTGGTTGGCGCACTGTGAAGCACGGCT
GAAGTCGAGATCGGCTACCCGCTAGACCTACCTCGATGTGATCAACTGTGCTCATGATGTCAAAA
CTCCACTTACCGGACCCAATTGACGACCACCACTGGTCTCCTCGCCCCACTAAACACTCCTACAC
ACCACAAACTAGATTCCACACAGCCACGCCCACGCTACCCCACATTTCGCCACGCGGTGACACCT
AAATACGACCAAATACGACCCACCATCTCGATCGTACCATCACTCGGTCACGATCGGGCACGATC
TGCTAGGGTCCTGTTCCTGCGCCGAAGCCTGTCACCGTCACTGCCATGTAACAAACACATTCAAC
ACGTTCGCATGTCCCATAGCGAACCCACCTCTAGAACTCGCCTCT
Right flanking sequence: Indices 57776 -- 58275
CCACTTCAGTCCTCTCCTTCACTAGGATACTATCCCCACCTCAGCCCACCCCAACCCTCCTGAAA
CAAGTTCATTACTATAAATAATGCACACTCAGCTGTTGTCCATGAGCTCGCCGGCCCGGTTCCCG
CCATGCTGTTCCCAGAGCCGCATCCGCTCCCCGAAGGCGATTTCCTCCCCGTGGTTGTCGCCAGT
GTCGCCGTCCTTCATCGCCGTGGTCAGCTGAAGACTGGTGGCCAGCTGAGCCACCCGGCTGTCGT
CGCTGGCCTGGCGTTTCAATAGTGCGGCAATGGTGTACTGGGAGGGGCCGTGGCGGTGCACGTTG
CGGCCCTCAATGCCGTCCTTGGTGGCCACCGTCGACTTGCACAGCATTGTCAGCGCCCGCAGCAG
CGGTCGCAGCGGCAGGCTGATTTCCATATCGTCGTCCATGGTGGTTAGATGATGCTACTGAAATG
GTTGCGGTCATGATGTTGACGGTCGCCAAAAGAAACGAGAAAGAC
Found at i:59294 original size:12 final size:12
Alignment explanation
Indices: 59277--59313 Score: 74
Period size: 12 Copynumber: 3.1 Consensus size: 12
59267 CAAGTACTCC
59277 CGCAATCTCCAT
1 CGCAATCTCCAT
59289 CGCAATCTCCAT
1 CGCAATCTCCAT
59301 CGCAATCTCCAT
1 CGCAATCTCCAT
59313 C
1 C
59314 CCCACACATC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 25 1.00
ACGTcount: A:0.24, C:0.43, G:0.08, T:0.24
Consensus pattern (12 bp):
CGCAATCTCCAT
Left flanking sequence: Indices 58777 -- 59276
AGCCCCGCCGTGATAATGCCGTGCATGGAGGATGCGCCAGTCGTCTCGCTTGCAGCTGGCTGCGA
CGGCGAGTAACCGGGGACTGCTGTATGGAAGGAAGCACCCGCCTATCGAAGGCGGGAACACGAGA
AAAGAAAAGGGGCGGTGGTTGTTTTGGGGACGAGTTGGAGGGCGTGGTGGTGGGCCAGCCATTGT
TCGCAGGGCTAGCACGACTAAAGTTTAAGCACAAAACTCGTATACCACCGCAATGCGTCTGGGCA
TGATTGGCTCATCATATGAAAAGCATGCGACCCCACAAAGTAGAGCATGGGGTGAACGCACGAGT
CGTACGGGTTGAGTAGGGCTGGGCAGAGGACCGCCACACGTGAAAGTTACTAGTCGCTACCGGCA
CGATACGTACGCCCAGTGCGCACTGGGCTACGGTACCGGGACGTTACCGGTATACTCGCCTGATG
CTACGAATGATCTACCTACGGGAATTAACATCCAACAAGTACTCC
Right flanking sequence: Indices 59314 -- 59813
CCCACACATCACATCCCCACCAGTTCTCTAATTCATTTATATCCACCTCATTCCATTCCTCACTT
CTCACACGCCCACCCAAATCATACTCACCCAAACCACCCACCCAAACCACCCATCCAAACCACAC
CCAACCAACACGTCCACACCCACTCACCCACTAACACACTAACCCACTACTCTCACATCCACACA
CCACCCACATAAACCCTTCTTTCACCCCTCTTTCACCCTTCTTTCTACCCTTTCCACCCTCTCTT
TCCATTTTCATACTCTCGTATGCATCCATCCCGACGTCTCGGTTCCCTGCATGCCACCTCGCAAA
TACGAAAGCCCCGTCCATCACCCCATCGCACCCATCACACCCACCACGCCCCACGTCCCCACCGC
ATCACCCACCCACCAACCCCCGCCTCCTGCTAATCCCCCTGACCACCGTCCTTCCCCATTATTTT
TACCCTCCACATGCGCTGGGCGCACCAGTGCAGTACCTACCGATA
Found at i:59422 original size:13 final size:13
Alignment explanation
Indices: 59404--59441 Score: 67
Period size: 13 Copynumber: 2.9 Consensus size: 13
59394 AAATCATACT
59404 CACCCAAACCACC
1 CACCCAAACCACC
59417 CACCCAAACCACC
1 CACCCAAACCACC
*
59430 CATCCAAACCAC
1 CACCCAAACCAC
59442 ACCCAACCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.39, C:0.58, G:0.00, T:0.03
Consensus pattern (13 bp):
CACCCAAACCACC
Left flanking sequence: Indices 58904 -- 59403
AGAAAAGAAAAGGGGCGGTGGTTGTTTTGGGGACGAGTTGGAGGGCGTGGTGGTGGGCCAGCCAT
TGTTCGCAGGGCTAGCACGACTAAAGTTTAAGCACAAAACTCGTATACCACCGCAATGCGTCTGG
GCATGATTGGCTCATCATATGAAAAGCATGCGACCCCACAAAGTAGAGCATGGGGTGAACGCACG
AGTCGTACGGGTTGAGTAGGGCTGGGCAGAGGACCGCCACACGTGAAAGTTACTAGTCGCTACCG
GCACGATACGTACGCCCAGTGCGCACTGGGCTACGGTACCGGGACGTTACCGGTATACTCGCCTG
ATGCTACGAATGATCTACCTACGGGAATTAACATCCAACAAGTACTCCCGCAATCTCCATCGCAA
TCTCCATCGCAATCTCCATCCCCACACATCACATCCCCACCAGTTCTCTAATTCATTTATATCCA
CCTCATTCCATTCCTCACTTCTCACACGCCCACCCAAATCATACT
Right flanking sequence: Indices 59442 -- 59941
ACCCAACCAACACGTCCACACCCACTCACCCACTAACACACTAACCCACTACTCTCACATCCACA
CACCACCCACATAAACCCTTCTTTCACCCCTCTTTCACCCTTCTTTCTACCCTTTCCACCCTCTC
TTTCCATTTTCATACTCTCGTATGCATCCATCCCGACGTCTCGGTTCCCTGCATGCCACCTCGCA
AATACGAAAGCCCCGTCCATCACCCCATCGCACCCATCACACCCACCACGCCCCACGTCCCCACC
GCATCACCCACCCACCAACCCCCGCCTCCTGCTAATCCCCCTGACCACCGTCCTTCCCCATTATT
TTTACCCTCCACATGCGCTGGGCGCACCAGTGCAGTACCTACCGATATTATTAAGCGGGTTAAAC
CCTCCCCGCGCGCACCTGAGCCAGTTTAAAAGGTGGGTGAGAAAAGACTTTTACCACCCTATCGT
GCTGATCGCCACCGACTGCGCCCTGTTCGTGTTGCACGCCGTGTT
Found at i:59547 original size:22 final size:21
Alignment explanation
Indices: 59521--59575 Score: 67
Period size: 22 Copynumber: 2.5 Consensus size: 21
59511 ACCCACATAA
*
59521 ACCCTTCTTTC-ACCCCTCTTTC
1 ACCCTTCTTTCTA-CCCT-TTCC
59543 ACCCTTCTTTCTACCCTTTCC
1 ACCCTTCTTTCTACCCTTTCC
59564 ACCCTCTCTTTC
1 ACCCT-TCTTTC
59576 CATTTTCATA
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
21 8 0.27
22 21 0.70
23 1 0.03
ACGTcount: A:0.09, C:0.49, G:0.00, T:0.42
Consensus pattern (21 bp):
ACCCTTCTTTCTACCCTTTCC
Left flanking sequence: Indices 59021 -- 59520
GCAATGCGTCTGGGCATGATTGGCTCATCATATGAAAAGCATGCGACCCCACAAAGTAGAGCATG
GGGTGAACGCACGAGTCGTACGGGTTGAGTAGGGCTGGGCAGAGGACCGCCACACGTGAAAGTTA
CTAGTCGCTACCGGCACGATACGTACGCCCAGTGCGCACTGGGCTACGGTACCGGGACGTTACCG
GTATACTCGCCTGATGCTACGAATGATCTACCTACGGGAATTAACATCCAACAAGTACTCCCGCA
ATCTCCATCGCAATCTCCATCGCAATCTCCATCCCCACACATCACATCCCCACCAGTTCTCTAAT
TCATTTATATCCACCTCATTCCATTCCTCACTTCTCACACGCCCACCCAAATCATACTCACCCAA
ACCACCCACCCAAACCACCCATCCAAACCACACCCAACCAACACGTCCACACCCACTCACCCACT
AACACACTAACCCACTACTCTCACATCCACACACCACCCACATAA
Right flanking sequence: Indices 59576 -- 60075
CATTTTCATACTCTCGTATGCATCCATCCCGACGTCTCGGTTCCCTGCATGCCACCTCGCAAATA
CGAAAGCCCCGTCCATCACCCCATCGCACCCATCACACCCACCACGCCCCACGTCCCCACCGCAT
CACCCACCCACCAACCCCCGCCTCCTGCTAATCCCCCTGACCACCGTCCTTCCCCATTATTTTTA
CCCTCCACATGCGCTGGGCGCACCAGTGCAGTACCTACCGATATTATTAAGCGGGTTAAACCCTC
CCCGCGCGCACCTGAGCCAGTTTAAAAGGTGGGTGAGAAAAGACTTTTACCACCCTATCGTGCTG
ATCGCCACCGACTGCGCCCTGTTCGTGTTGCACGCCGTGTTATGAATGGCAAAGCCGCAGCCCAA
CCCCGCCAGCACAAGGCGCAAGCACACCAACCTGAAGCTCGGGTGTGCCAACTGCAAACGGAAGA
AGATCCGGTGCGATGAAACGCTTCCCCAGTGTGGCAAGTGTGCTC
Found at i:59560 original size:12 final size:11
Alignment explanation
Indices: 59521--59560 Score: 62
Period size: 11 Copynumber: 3.5 Consensus size: 11
59511 ACCCACATAA
59521 ACCCTTCTTTC
1 ACCCTTCTTTC
*
59532 ACCCCTCTTTC
1 ACCCTTCTTTC
59543 ACCCTTCTTTC
1 ACCCTTCTTTC
59554 TACCCTT
1 -ACCCTT
59561 TCCACCCTCT
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
11 20 0.77
12 6 0.23
ACGTcount: A:0.10, C:0.47, G:0.00, T:0.42
Consensus pattern (11 bp):
ACCCTTCTTTC
Left flanking sequence: Indices 59021 -- 59520
GCAATGCGTCTGGGCATGATTGGCTCATCATATGAAAAGCATGCGACCCCACAAAGTAGAGCATG
GGGTGAACGCACGAGTCGTACGGGTTGAGTAGGGCTGGGCAGAGGACCGCCACACGTGAAAGTTA
CTAGTCGCTACCGGCACGATACGTACGCCCAGTGCGCACTGGGCTACGGTACCGGGACGTTACCG
GTATACTCGCCTGATGCTACGAATGATCTACCTACGGGAATTAACATCCAACAAGTACTCCCGCA
ATCTCCATCGCAATCTCCATCGCAATCTCCATCCCCACACATCACATCCCCACCAGTTCTCTAAT
TCATTTATATCCACCTCATTCCATTCCTCACTTCTCACACGCCCACCCAAATCATACTCACCCAA
ACCACCCACCCAAACCACCCATCCAAACCACACCCAACCAACACGTCCACACCCACTCACCCACT
AACACACTAACCCACTACTCTCACATCCACACACCACCCACATAA
Right flanking sequence: Indices 59561 -- 60060
TCCACCCTCTCTTTCCATTTTCATACTCTCGTATGCATCCATCCCGACGTCTCGGTTCCCTGCAT
GCCACCTCGCAAATACGAAAGCCCCGTCCATCACCCCATCGCACCCATCACACCCACCACGCCCC
ACGTCCCCACCGCATCACCCACCCACCAACCCCCGCCTCCTGCTAATCCCCCTGACCACCGTCCT
TCCCCATTATTTTTACCCTCCACATGCGCTGGGCGCACCAGTGCAGTACCTACCGATATTATTAA
GCGGGTTAAACCCTCCCCGCGCGCACCTGAGCCAGTTTAAAAGGTGGGTGAGAAAAGACTTTTAC
CACCCTATCGTGCTGATCGCCACCGACTGCGCCCTGTTCGTGTTGCACGCCGTGTTATGAATGGC
AAAGCCGCAGCCCAACCCCGCCAGCACAAGGCGCAAGCACACCAACCTGAAGCTCGGGTGTGCCA
ACTGCAAACGGAAGAAGATCCGGTGCGATGAAACGCTTCCCCAGT
Found at i:64396 original size:14 final size:14
Alignment explanation
Indices: 64377--64421 Score: 54
Period size: 14 Copynumber: 3.2 Consensus size: 14
64367 CCCTTCAACT
*
64377 AACTTCGTAGCTCG
1 AACTTCATAGCTCG
64391 AACTTCATAGCTCG
1 AACTTCATAGCTCG
* * *
64405 AGCTTCTTAACTCG
1 AACTTCATAGCTCG
64419 AAC
1 AAC
64422 CTAGTTTGAC
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
14 26 1.00
ACGTcount: A:0.27, C:0.29, G:0.16, T:0.29
Consensus pattern (14 bp):
AACTTCATAGCTCG
Left flanking sequence: Indices 63877 -- 64376
GACTCCCCGATCGCGCTTGTGTTGTTGCAGATGGCGTCGCTGTACACCGAGGTGGCGCTCGCGCG
GTTGGACCAGGACAAGCTGATCACCGCCGTCAACGCCAAGTTGGTGCTGGTGCTCAACGACGAGT
TCATCCGCGTCAACGAGTTGCGCAAAAAGGTGTACGCGGCCCGGGCCGAGTTTGATGCGTTGAGA
GCGGTGCACAAGGACGACGAGGAAAACGAGGAGTTGATTGCCAAGGAGGACAACTTGGTGCTGGC
GACCGAGGTGGCGGTGGTGGAAATGAAGCAGTTGTTGCAGCCGCTGCAGAACGTCAACTTGTTGA
AGCAGGCGGTGCAGGCGCAGGTGGACTTCCACCAGGCCGCGGCCAAGAAGTTGGCGGCGCTCATG
GAGTCGATCGACAACATCGATATCAAGGACGACGAGTGATTAATAGCAATGCGCATGTAATAGAG
GTGTGTAGTGGTTCGGAAGGGCCTAGAAGGATACACCCTTCAACT
Right flanking sequence: Indices 64422 -- 64921
CTAGTTTGACTACTGCGTGTTCTCAGACCAGAATTAAATACAGCAATGAGAGATTCTACATCTAG
CGAAGAGAGCCAAGACGAATATAACCTTTGTAGATGAAATTTTTACGGTTCAATCCAGTAAGAAC
CTTGGGATTACTACCTTCCTGGGTCACAGCCTCAACCTCTGACGCCTTGCTTTTTGGCCTTCTTT
CTCGACTGCCAGTAGCCCTTGTTCTTACGCTTTCTCGACAGCTGCTCGCTTGCAACCGTCAGCAC
TTTAGGCTCCTGGTGCGTTTCCTCAACCTCGACAAGTGCCTTTTTCTTTACCATGTCGAACGGTG
TGTCGTCAAGCCACGCCATGCACAAGTTGTTGGGTTTCGATTCGAGTGATTTTTTGAAACATTGT
TGGCTGCCTCGGTCGAAGCACGAATAGTACATTCGTGCATATCCTGTCATGAGATGGCGAAGACT
TTTCATTTGGGAAAACCATGAAATCGGCATAATAGGCCCAGAGTC
Found at i:72071 original size:9 final size:9
Alignment explanation
Indices: 72057--72104 Score: 50
Period size: 9 Copynumber: 5.8 Consensus size: 9
72047 GTTAAGACTG
72057 TCTGTGGGC
1 TCTGTGGGC
72066 TCTGTGGG-
1 TCTGTGGGC
*
72074 TGT-TGGGC
1 TCTGTGGGC
72082 TCTGTGGG-
1 TCTGTGGGC
*
72090 TGT-TGGGC
1 TCTGTGGGC
72098 TCTGTGG
1 TCTGTGG
72105 CTGCTGGTTG
Statistics
Matches: 31, Mismatches: 4, Indels: 8
0.72 0.09 0.19
Matches are distributed among these distances:
7 8 0.26
8 8 0.26
9 15 0.48
ACGTcount: A:0.00, C:0.15, G:0.48, T:0.38
Consensus pattern (9 bp):
TCTGTGGGC
Left flanking sequence: Indices 71557 -- 72056
GTTGTCGCCGCTCAGGCCCACTGCTGGCAGCTGGCCCGTGCGCGACTTGTTGACACAGTAGTTGT
AGACGGCGGTGTAGCAATTCATGTACATGTTGGCGGTGACGCCCTGGTCGCCCTGGGACCCGAGA
ATGTGCTCGAGTCCGGGTTGGATGAACGTCCAGGTCGCTGCCAAGTCGCTAGCCACGGGGAACGA
CGACATGATCTGGGTTGGGTGTGGGAGAAATTCGTTTTCTGGTGCGAAGGTGCGGCTTAGTGGCG
AGGCGGCGATGGTGGTGGGGCCGGTGGGGGTGGTGGTCGGGAGCTGGAGGCAGTGTGGATGTGGT
TGGGGAGAAGTGGATGGCTACGCTGGCTAGGTTTGGCGTTGTTTTGGGCGTGGTGGTGGGTGTAG
TTGGTGGACGTGTTCGATCATTTACGAGGAATATAGTACGACAAAAGTGGTTGGGTATGTGAGGG
AATGTAGGTGGGAAAAGAAACAGGGTTATTTGTTTGTTAAGACTG
Right flanking sequence: Indices 72105 -- 72604
CTGCTGGTTGGTGTTGTCTAACGGAAGTAACCTACCATAGGCATTTGTCACATAGACAATTTACG
ATTGCATTCAATTGGCTTGGCAGTGGACCATACTTGTCACATGTACCGTAAAACAATTGTTACGG
AAGTAGCTTCTACTACTGGCACCCACGTCTACCAACATAAGTACAACAACCAACTAAGTCTCGAG
CGTAGCCATTACACAAGCACAACGAACCGTCAACGTCCCGAGCCTAGCCACGCCAGACCTAACCA
CCTTCTGCTACGTCCTCACGTCGCCGTGCTACGCCCTGCTTCTCTCCACATCCCCTCTATATAAA
CCCCCGTAGCCACCAGCCCCCCAATGATCTCGCCGTTGGCCATTGTCGCAGGCATCCTCGCCGTC
GGCGTTCTCCTGACCCTCAAGCTCCTGGTGCTAGAGATCCGCACCCGCAAGTCGTCCCTCTCCTA
CGACAACCCTCTGGTGTACGCCCAGGACCACGTCACCAGCATCGA
Found at i:72082 original size:16 final size:16
Alignment explanation
Indices: 72061--72104 Score: 88
Period size: 16 Copynumber: 2.8 Consensus size: 16
72051 AGACTGTCTG
72061 TGGGCTCTGTGGGTGT
1 TGGGCTCTGTGGGTGT
72077 TGGGCTCTGTGGGTGT
1 TGGGCTCTGTGGGTGT
72093 TGGGCTCTGTGG
1 TGGGCTCTGTGG
72105 CTGCTGGTTG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 28 1.00
ACGTcount: A:0.00, C:0.14, G:0.50, T:0.36
Consensus pattern (16 bp):
TGGGCTCTGTGGGTGT
Left flanking sequence: Indices 71561 -- 72060
TCGCCGCTCAGGCCCACTGCTGGCAGCTGGCCCGTGCGCGACTTGTTGACACAGTAGTTGTAGAC
GGCGGTGTAGCAATTCATGTACATGTTGGCGGTGACGCCCTGGTCGCCCTGGGACCCGAGAATGT
GCTCGAGTCCGGGTTGGATGAACGTCCAGGTCGCTGCCAAGTCGCTAGCCACGGGGAACGACGAC
ATGATCTGGGTTGGGTGTGGGAGAAATTCGTTTTCTGGTGCGAAGGTGCGGCTTAGTGGCGAGGC
GGCGATGGTGGTGGGGCCGGTGGGGGTGGTGGTCGGGAGCTGGAGGCAGTGTGGATGTGGTTGGG
GAGAAGTGGATGGCTACGCTGGCTAGGTTTGGCGTTGTTTTGGGCGTGGTGGTGGGTGTAGTTGG
TGGACGTGTTCGATCATTTACGAGGAATATAGTACGACAAAAGTGGTTGGGTATGTGAGGGAATG
TAGGTGGGAAAAGAAACAGGGTTATTTGTTTGTTAAGACTGTCTG
Right flanking sequence: Indices 72105 -- 72604
CTGCTGGTTGGTGTTGTCTAACGGAAGTAACCTACCATAGGCATTTGTCACATAGACAATTTACG
ATTGCATTCAATTGGCTTGGCAGTGGACCATACTTGTCACATGTACCGTAAAACAATTGTTACGG
AAGTAGCTTCTACTACTGGCACCCACGTCTACCAACATAAGTACAACAACCAACTAAGTCTCGAG
CGTAGCCATTACACAAGCACAACGAACCGTCAACGTCCCGAGCCTAGCCACGCCAGACCTAACCA
CCTTCTGCTACGTCCTCACGTCGCCGTGCTACGCCCTGCTTCTCTCCACATCCCCTCTATATAAA
CCCCCGTAGCCACCAGCCCCCCAATGATCTCGCCGTTGGCCATTGTCGCAGGCATCCTCGCCGTC
GGCGTTCTCCTGACCCTCAAGCTCCTGGTGCTAGAGATCCGCACCCGCAAGTCGTCCCTCTCCTA
CGACAACCCTCTGGTGTACGCCCAGGACCACGTCACCAGCATCGA
Found at i:74866 original size:19 final size:18
Alignment explanation
Indices: 74842--74905 Score: 62
Period size: 18 Copynumber: 3.6 Consensus size: 18
74832 TTGTGGCCGA
74842 GCTTGCAGCTCTTTAGGCT
1 GCTTGCA-CTCTTTAGGCT
*
74861 GCTTGCACTCTTGAGG--
1 GCTTGCACTCTTTAGGCT
*
74877 GC-TGTAGCTCTTTAGGCT
1 GCTTGCA-CTCTTTAGGCT
*
74895 GTTTGCACTCT
1 GCTTGCACTCT
74906 AGGGCTGCTT
Statistics
Matches: 36, Mismatches: 5, Indels: 9
0.72 0.10 0.18
Matches are distributed among these distances:
15 3 0.08
16 10 0.28
18 13 0.36
19 10 0.28
ACGTcount: A:0.11, C:0.25, G:0.27, T:0.38
Consensus pattern (18 bp):
GCTTGCACTCTTTAGGCT
Left flanking sequence: Indices 74342 -- 74841
GACATTTTCACCCTGTCGACGGTGCTGTCGCTGTTGGCGGAGCTGCAGTTGCACCGCGAGATCGT
GCTGGGCATCTCGTACCCCGTGGGATTTGCGTGCCACGACGGAGACGCCCCCTACCTGGAGATCA
CCTACACCCACAAGCTCCAGGGGTGCTTGGACCTGATGCAGGCCGCTCACAACCCGCACCACTTT
TTGAATATCACCAAGAGAGGGCAGGTGGCGGTGTTGGGCACCTCCGGAAACGACGAGACGTTCAT
TGTGGCCAACATCGAGCACCTTTGTTTGGCGCAAATCGACGCTGTGCTCGCCAAGGCCGGGCTGC
GACCGGTGATGGTAGACGTGGGCCAGTTGGGTAACGCCGAGTACGAGCTGAAGCTTGCCAAGATG
CGCCACGTGTTGGCCCTGGGAGCCCATGTGGTTGGTGTGATGGTGGACTCCGGTGAGGAGTACGA
CTTGCCCACCGAGTACATTGAGAACACCCCGCGGTTTGTGGCCGA
Right flanking sequence: Indices 74906 -- 75405
AGGGCTGCTTGGCTTTAGTATTTATGTAACGATGATAGACGACCATAGAGAAGTAATGGGGTGTG
GTGGTTTAGGGGTATGTGACAGGTGGCCCTTGAACCAGGTGCTCGTAGGCGGCGAGCGATTTGAG
TTCCTGGAATTCAGACCACCTGATCGGATAGAACTCAGACATGTGTCATTTGAGAAGGTCAGATA
GACGGTTAGATCATGTGAAAGTGAGGTGGACAGTTCATTTGCTAACTACCAAGTCGTATTCTATT
GGAGTGAATTCATGTGAAAGAGACGACCGATTCATTCCTGCGGTCTATAATGGTATGAGCAAACT
CTCAGGAGAGACCAATGGAATTACAACGAATCACAACGGTTATAACGAAAATACAATCCTTACAA
TGATAATACAACCCTTACAACGAAAGTCAAACCTTTTAATGAAAAAATAACCCTTACAACGAAGA
ATAACCCTTACAACGATTTACAACCCTCGAATATACAACACTGAC
Found at i:74891 original size:34 final size:32
Alignment explanation
Indices: 74848--74912 Score: 103
Period size: 34 Copynumber: 2.0 Consensus size: 32
74838 CCGAGCTTGC
74848 AGCTCTTTAGGCTGCTTGCACTCTTGAGGGCTGT
1 AGCTCTTTAGGCTGCTTGCACTC-T-AGGGCTGT
*
74882 AGCTCTTTAGGCTGTTTGCACTCTAGGGCTG
1 AGCTCTTTAGGCTGCTTGCACTCTAGGGCTG
74913 CTTGGCTTTA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
32 7 0.23
33 1 0.03
34 22 0.73
ACGTcount: A:0.12, C:0.23, G:0.29, T:0.35
Consensus pattern (32 bp):
AGCTCTTTAGGCTGCTTGCACTCTAGGGCTGT
Left flanking sequence: Indices 74348 -- 74847
TTCACCCTGTCGACGGTGCTGTCGCTGTTGGCGGAGCTGCAGTTGCACCGCGAGATCGTGCTGGG
CATCTCGTACCCCGTGGGATTTGCGTGCCACGACGGAGACGCCCCCTACCTGGAGATCACCTACA
CCCACAAGCTCCAGGGGTGCTTGGACCTGATGCAGGCCGCTCACAACCCGCACCACTTTTTGAAT
ATCACCAAGAGAGGGCAGGTGGCGGTGTTGGGCACCTCCGGAAACGACGAGACGTTCATTGTGGC
CAACATCGAGCACCTTTGTTTGGCGCAAATCGACGCTGTGCTCGCCAAGGCCGGGCTGCGACCGG
TGATGGTAGACGTGGGCCAGTTGGGTAACGCCGAGTACGAGCTGAAGCTTGCCAAGATGCGCCAC
GTGTTGGCCCTGGGAGCCCATGTGGTTGGTGTGATGGTGGACTCCGGTGAGGAGTACGACTTGCC
CACCGAGTACATTGAGAACACCCCGCGGTTTGTGGCCGAGCTTGC
Right flanking sequence: Indices 74913 -- 75412
CTTGGCTTTAGTATTTATGTAACGATGATAGACGACCATAGAGAAGTAATGGGGTGTGGTGGTTT
AGGGGTATGTGACAGGTGGCCCTTGAACCAGGTGCTCGTAGGCGGCGAGCGATTTGAGTTCCTGG
AATTCAGACCACCTGATCGGATAGAACTCAGACATGTGTCATTTGAGAAGGTCAGATAGACGGTT
AGATCATGTGAAAGTGAGGTGGACAGTTCATTTGCTAACTACCAAGTCGTATTCTATTGGAGTGA
ATTCATGTGAAAGAGACGACCGATTCATTCCTGCGGTCTATAATGGTATGAGCAAACTCTCAGGA
GAGACCAATGGAATTACAACGAATCACAACGGTTATAACGAAAATACAATCCTTACAATGATAAT
ACAACCCTTACAACGAAAGTCAAACCTTTTAATGAAAAAATAACCCTTACAACGAAGAATAACCC
TTACAACGATTTACAACCCTCGAATATACAACACTGACCCCCATC
Found at i:84598 original size:21 final size:21
Alignment explanation
Indices: 84572--84633 Score: 92
Period size: 21 Copynumber: 3.0 Consensus size: 21
84562 CGAATATTCG
84572 GAAAGAAGAGGAGTATGGATT
1 GAAAGAAGAGGAGTATGGATT
*
84593 GAAAGAAGATGAGTATGGATT
1 GAAAGAAGAGGAGTATGGATT
84614 GAAA-AGAGAGG-GTATGGATT
1 GAAAGA-AGAGGAGTATGGATT
84634 AAACAGAGGA
Statistics
Matches: 38, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
20 10 0.26
21 28 0.74
ACGTcount: A:0.42, C:0.00, G:0.37, T:0.21
Consensus pattern (21 bp):
GAAAGAAGAGGAGTATGGATT
Left flanking sequence: Indices 84072 -- 84571
GCCACCCGCAGTTCGACTTGGCCAACTTTTTGCAGCCGTACGTGTTGCCCAACCAGTTGGTCAAC
TTGTTGTACAAGCCGTACAAGACCGACATGGGCCGCGAAAACCCAGAGTCGCAGGCACAGGTGAT
CAAGGTGTTGAAGTTGTACATGTCCAAGTACGAAGGGCTGTGGGACCCCGCTGACCCCAAGAACA
ACCCGCTCGACTTGCGGGTTGTGGGCGATGTGTTTGGGTTGTTGCGGTTGTGTGTCATTTCCCAG
GGTATTGCCATGCGGGTGAAGAAGGGGGTGGCGTCGCTGGCCAACGCCTCTGGGTTTGCCCTGTT
GTACCCGTACTTGTCGCAGCTTGCGATGGAGTCGATCGAGGGCGACAAGGGGACGAAGTTGTAGC
ATGAATAAACATTAGGAAAGTTTGAAAGGTAGGTGGGTGTGATTAGTGGACTCAGTAGTCTGAAT
ACTAAGGTTTGTGGATTCTTTGATGGTGAACCTCACGAATATTCG
Right flanking sequence: Indices 84634 -- 85133
AAACAGAGGAAGAGTGGTTGTTGTCAGCAAGTTTGCTAGATAATATGTACCAATGTTTTCCATCC
ATACTGTGAATTATTTCACTTAGCGCATATATACGATGTGGTACATCGACCCATGATATCTCCAT
TATACCCACTTTAAATCACCTATTCGACTGCCTCGCTCACCATACAACACACCATACACCCACCA
CGAATCACAGTCTCCGTAAACATTATCTCACCCCCACTTCCACTTTCGCACGCTTTACATCTTTT
TCATACGATTTCGCAGCCATCACCATGTCCGAGCCGTTAACCACCCACACCCGCCCCGCCACCGA
CGCGTTGATCACTGTCCGCATCATCAAGTCGTTCCCCTACCGCAATGTCAAGAACCTTGTGGTGC
CCCGAATCAACTTGAAGGAGACCACCCCGGCACAGCTCCTCGAGCAGATCCAGAAACGCATCGAC
ACCGAGGGCGGGCTCCGCCCGTACCGCAACGTGGCGTACGACACG
Found at i:84641 original size:20 final size:19
Alignment explanation
Indices: 84573--84641 Score: 66
Period size: 21 Copynumber: 3.3 Consensus size: 19
84563 GAATATTCGG
*
84573 AAAGAAGAGGAGTATGGATTG
1 AAAG-AGAGG-GTATGGATTA
*
84594 AAAGAAGATGAGTATGGATTGA
1 AAAG-AGA-GGGTATGGATT-A
84616 AAAGAGAGGGTATGGATTA
1 AAAGAGAGGGTATGGATTA
84635 AACAGAG
1 AA-AGAG
84642 GAAGAGTGGT
Statistics
Matches: 42, Mismatches: 3, Indels: 7
0.81 0.06 0.13
Matches are distributed among these distances:
19 3 0.07
20 14 0.33
21 20 0.48
22 5 0.12
ACGTcount: A:0.45, C:0.01, G:0.35, T:0.19
Consensus pattern (19 bp):
AAAGAGAGGGTATGGATTA
Left flanking sequence: Indices 84073 -- 84572
CCACCCGCAGTTCGACTTGGCCAACTTTTTGCAGCCGTACGTGTTGCCCAACCAGTTGGTCAACT
TGTTGTACAAGCCGTACAAGACCGACATGGGCCGCGAAAACCCAGAGTCGCAGGCACAGGTGATC
AAGGTGTTGAAGTTGTACATGTCCAAGTACGAAGGGCTGTGGGACCCCGCTGACCCCAAGAACAA
CCCGCTCGACTTGCGGGTTGTGGGCGATGTGTTTGGGTTGTTGCGGTTGTGTGTCATTTCCCAGG
GTATTGCCATGCGGGTGAAGAAGGGGGTGGCGTCGCTGGCCAACGCCTCTGGGTTTGCCCTGTTG
TACCCGTACTTGTCGCAGCTTGCGATGGAGTCGATCGAGGGCGACAAGGGGACGAAGTTGTAGCA
TGAATAAACATTAGGAAAGTTTGAAAGGTAGGTGGGTGTGATTAGTGGACTCAGTAGTCTGAATA
CTAAGGTTTGTGGATTCTTTGATGGTGAACCTCACGAATATTCGG
Right flanking sequence: Indices 84642 -- 85141
GAAGAGTGGTTGTTGTCAGCAAGTTTGCTAGATAATATGTACCAATGTTTTCCATCCATACTGTG
AATTATTTCACTTAGCGCATATATACGATGTGGTACATCGACCCATGATATCTCCATTATACCCA
CTTTAAATCACCTATTCGACTGCCTCGCTCACCATACAACACACCATACACCCACCACGAATCAC
AGTCTCCGTAAACATTATCTCACCCCCACTTCCACTTTCGCACGCTTTACATCTTTTTCATACGA
TTTCGCAGCCATCACCATGTCCGAGCCGTTAACCACCCACACCCGCCCCGCCACCGACGCGTTGA
TCACTGTCCGCATCATCAAGTCGTTCCCCTACCGCAATGTCAAGAACCTTGTGGTGCCCCGAATC
AACTTGAAGGAGACCACCCCGGCACAGCTCCTCGAGCAGATCCAGAAACGCATCGACACCGAGGG
CGGGCTCCGCCCGTACCGCAACGTGGCGTACGACACGTTGAAGAC
Found at i:88171 original size:12 final size:12
Alignment explanation
Indices: 88154--88196 Score: 59
Period size: 12 Copynumber: 3.6 Consensus size: 12
88144 TTAACCTTCG
88154 AGGAAATAAGTA
1 AGGAAATAAGTA
*
88166 AGGAAATTAGTA
1 AGGAAATAAGTA
* *
88178 AGGAAAGAAGCA
1 AGGAAATAAGTA
88190 AGGAAAT
1 AGGAAAT
88197 GGAAGTAAAC
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
12 26 1.00
ACGTcount: A:0.56, C:0.02, G:0.28, T:0.14
Consensus pattern (12 bp):
AGGAAATAAGTA
Left flanking sequence: Indices 87654 -- 88153
CGGCACCCCTGCCACCACCTCGCAGATGGCCAAGGATGTCACCACTTTCCTCAACTGGGCCGCCG
AGCCCGAGCACGACGAGCGTAAGAAGTGGGGTTTGAAGGCGCTCATTGTGGTGTCGTCCCTCTAC
TTGATCTCGATCTACGTCAAGAAGTTCAAGTGGCAACCCATCAAGAACAGAAAGTTCAGATTTGA
CCCCCCCAACAAGAAGAAGTAAGCGTACTTCGTCCCCCAGTTAGTTGGCTTCATCATCCGGCCAA
TGTAAATACGTCATTTATCATATGTGAACCAATAGATTCATACTATAAAAAATAAAAAGTTTGAG
TGAATGCGGTGTTAGGGTGTGTTTTAGTGTAGTTTTTAATGGTGTTTTGTGGTGTTTTGATTGGT
TTGAGGACGAGTGTAGGGAATTGTGGAGTAGATCAAGATTGTGAAATTTTATCGAAAATTGGTGA
AAAATTGGAAGAACAGCAGTTAGCATTCGAGAGAGTTAACCTTCG
Right flanking sequence: Indices 88197 -- 88696
GGAAGTAAACAAAGACATTATTTCCAATAAGAACTGAACACTTCAAAGGCACCGTTTAGCTTTTA
GACTCAAACCGTTTGTTAGCATACCTTATCCAGCCAATGTATGCAATCACAGATCAGCCACATAA
GCAGGGCATCATTATGTAATCAAGTAGTGTTTTGATTGTCCCGGGGCTTCCGAACACCAACCACC
CCGCCTCTCTGTCAGCGGTGCTGTACTTCCGTTGGACTCATCAAAATCCCTCACCAGCAGCATTT
ACTACACCTCAGTTTCATAGTTTTCACAAATTTCACCACACACCCCTGCCACCACCGCATGTTAA
TCCCCGCTTACTGTGCATCGTTCAAAAACGCTTTCTTCCTCATCTCATACTAATGTCTGCGTTAG
GCTAGTGGCAGACAACGGCAGCGTGAACCCCTTGCGCTATTTATAATGTACTCGGAACTATGTCT
CGGATATACCTTCATCCCCCCGAAGGTCCGGAGATTAGCCTACCG
Found at i:92969 original size:9 final size:9
Alignment explanation
Indices: 92955--93082 Score: 170
Period size: 9 Copynumber: 14.4 Consensus size: 9
92945 TACCTCAACG
92955 TATCAACAA
1 TATCAACAA
92964 TATCAACAA
1 TATCAACAA
*
92973 TATCAACAT
1 TATCAACAA
92982 TATCAACAA
1 TATCAACAA
92991 TATCAAC-A
1 TATCAACAA
92999 TATCAACAA
1 TATCAACAA
93008 TATCAACAA
1 TATCAACAA
*
93017 CATCAACAA
1 TATCAACAA
* *
93026 CATCAACAT
1 TATCAACAA
*
93035 TATCAAAAA
1 TATCAACAA
93044 TATC-ACAA
1 TATCAACAA
* *
93052 CATCAACAT
1 TATCAACAA
93061 TATCAACAA
1 TATCAACAA
*
93070 TATCCACAA
1 TATCAACAA
93079 TATC
1 TATC
93083 TCATCATTAT
Statistics
Matches: 104, Mismatches: 13, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
8 14 0.13
9 90 0.87
ACGTcount: A:0.52, C:0.25, G:0.00, T:0.23
Consensus pattern (9 bp):
TATCAACAA
Left flanking sequence: Indices 92455 -- 92954
GTTCAACGTCATGGACGTGCCCCAGCCCGTCCAGCCCCACGACAGCGCTCCTCCTGCCGACGACA
TCTACCTCGCCCGCGACCTGCCGCTGGACTTTTTTGCCCTGTTGCTGGGTCCCCAGCTGGTGAAG
TTTGGCGGGTTCCCTCGCAAGCCCGACGACATTGTGCCTGTGATGCCCGCCAACCAGCTTGCGCG
GGTGATTCCGTTGTCGCTGGAGGTGAAGGCGGAGCTCAGCCAGTTGAACGAGAAGATCTACTACG
ACTTGCGCAACAACTTTGTCGATATCAACGACTACTGTGCCTTCTACACCAGTTTGGAGCACATT
CTACACGAGTTGATGGACTACATCAACCAGGGGTAACCCATTATTTATTAGCCTGGCTGCTACTA
TTTATTTCTGTCCGTGGTGTCACGAGGCAGTATGTATTTATACAAACTATGCTTGATATCAAGAG
TCGTTAGTTCCATCCAAATAGGATTGGGTCAACAGTACCTCAACG
Right flanking sequence: Indices 93083 -- 93582
TCATCATTATCTCAATATCTCAACATCTCAACATCTCACCATCTCACTATCTCACCATCTCACCA
TCTCATTTCGTCGCTATCTCATTTCGTCGCTCATTGTCACTACTCTCGCCTATCCTTCCACATAT
ATTCATGCTACCTAGTTGCCAATGTTGAGAATGCCCTTGCGGTCGTAGACACCAGGACACCGGAG
ATACGGGTCCAACGCAATGTAGTTGTTCAGGAGCAACGTGCCCAACCCGATCTTCTCCTCCAAGT
ACTTCAGCAGCACCTCGGGGTTGGTACACTCCACCCACCGGCGGGTGGCGTCGAGGAACCGCATG
TACAACACGTCCCGCTCGCGCATGAGCCGGGCGTAGGTGGCGTCTCTGTCCTTGGGCGGGAGGTC
GTCGCCCTGCTGGGGCTTCGGGTAGTCGGGACCCAGCCCGTCGGTGCCGCCAAACAGCACGGGAA
TGTCCTCCTTGGGGATGAACCGGTTGATCTCCTTGAAGTTCTTGC
Found at i:93003 original size:44 final size:44
Alignment explanation
Indices: 92949--93082 Score: 171
Period size: 44 Copynumber: 3.0 Consensus size: 44
92939 CAACAGTACC
* *
92949 TCAACGTATCAACAATATCAACAATATCAACATTATCAACAATA
1 TCAACATATCAACAATATCAACAATATCAACAATATCAACAATA
* * *
92993 TCAACATATCAACAATATCAACAACATCAACAACATCAACATTA
1 TCAACATATCAACAATATCAACAATATCAACAATATCAACAATA
* * * *
93037 TCAAAAATATC-ACAACATCAACATTATCAACAATATCCACAATA
1 TC-AACATATCAACAATATCAACAATATCAACAATATCAACAATA
93081 TC
1 TC
93083 TCATCATTAT
Statistics
Matches: 77, Mismatches: 12, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
44 70 0.91
45 7 0.09
ACGTcount: A:0.51, C:0.25, G:0.01, T:0.23
Consensus pattern (44 bp):
TCAACATATCAACAATATCAACAATATCAACAATATCAACAATA
Left flanking sequence: Indices 92449 -- 92948
CGACTTGTTCAACGTCATGGACGTGCCCCAGCCCGTCCAGCCCCACGACAGCGCTCCTCCTGCCG
ACGACATCTACCTCGCCCGCGACCTGCCGCTGGACTTTTTTGCCCTGTTGCTGGGTCCCCAGCTG
GTGAAGTTTGGCGGGTTCCCTCGCAAGCCCGACGACATTGTGCCTGTGATGCCCGCCAACCAGCT
TGCGCGGGTGATTCCGTTGTCGCTGGAGGTGAAGGCGGAGCTCAGCCAGTTGAACGAGAAGATCT
ACTACGACTTGCGCAACAACTTTGTCGATATCAACGACTACTGTGCCTTCTACACCAGTTTGGAG
CACATTCTACACGAGTTGATGGACTACATCAACCAGGGGTAACCCATTATTTATTAGCCTGGCTG
CTACTATTTATTTCTGTCCGTGGTGTCACGAGGCAGTATGTATTTATACAAACTATGCTTGATAT
CAAGAGTCGTTAGTTCCATCCAAATAGGATTGGGTCAACAGTACC
Right flanking sequence: Indices 93083 -- 93582
TCATCATTATCTCAATATCTCAACATCTCAACATCTCACCATCTCACTATCTCACCATCTCACCA
TCTCATTTCGTCGCTATCTCATTTCGTCGCTCATTGTCACTACTCTCGCCTATCCTTCCACATAT
ATTCATGCTACCTAGTTGCCAATGTTGAGAATGCCCTTGCGGTCGTAGACACCAGGACACCGGAG
ATACGGGTCCAACGCAATGTAGTTGTTCAGGAGCAACGTGCCCAACCCGATCTTCTCCTCCAAGT
ACTTCAGCAGCACCTCGGGGTTGGTACACTCCACCCACCGGCGGGTGGCGTCGAGGAACCGCATG
TACAACACGTCCCGCTCGCGCATGAGCCGGGCGTAGGTGGCGTCTCTGTCCTTGGGCGGGAGGTC
GTCGCCCTGCTGGGGCTTCGGGTAGTCGGGACCCAGCCCGTCGGTGCCGCCAAACAGCACGGGAA
TGTCCTCCTTGGGGATGAACCGGTTGATCTCCTTGAAGTTCTTGC
Found at i:93013 original size:53 final size:53
Alignment explanation
Indices: 92955--93082 Score: 186
Period size: 53 Copynumber: 2.4 Consensus size: 53
92945 TACCTCAACG
* *
92955 TATCAACAATATCAACAATATCAACATTATCAACAATATCA-ACATATCAACAA
1 TATCAACAATATCAACAATATCAACATTATCAAAAATATCACA-ACATCAACAA
* * *
93008 TATCAACAACATCAACAACATCAACATTATCAAAAATATCACAACATCAACAT
1 TATCAACAATATCAACAATATCAACATTATCAAAAATATCACAACATCAACAA
*
93061 TATCAACAATATCCACAATATC
1 TATCAACAATATCAACAATATC
93083 TCATCATTAT
Statistics
Matches: 66, Mismatches: 8, Indels: 2
0.87 0.11 0.03
Matches are distributed among these distances:
53 65 0.98
54 1 0.02
ACGTcount: A:0.52, C:0.25, G:0.00, T:0.23
Consensus pattern (53 bp):
TATCAACAATATCAACAATATCAACATTATCAAAAATATCACAACATCAACAA
Left flanking sequence: Indices 92455 -- 92954
GTTCAACGTCATGGACGTGCCCCAGCCCGTCCAGCCCCACGACAGCGCTCCTCCTGCCGACGACA
TCTACCTCGCCCGCGACCTGCCGCTGGACTTTTTTGCCCTGTTGCTGGGTCCCCAGCTGGTGAAG
TTTGGCGGGTTCCCTCGCAAGCCCGACGACATTGTGCCTGTGATGCCCGCCAACCAGCTTGCGCG
GGTGATTCCGTTGTCGCTGGAGGTGAAGGCGGAGCTCAGCCAGTTGAACGAGAAGATCTACTACG
ACTTGCGCAACAACTTTGTCGATATCAACGACTACTGTGCCTTCTACACCAGTTTGGAGCACATT
CTACACGAGTTGATGGACTACATCAACCAGGGGTAACCCATTATTTATTAGCCTGGCTGCTACTA
TTTATTTCTGTCCGTGGTGTCACGAGGCAGTATGTATTTATACAAACTATGCTTGATATCAAGAG
TCGTTAGTTCCATCCAAATAGGATTGGGTCAACAGTACCTCAACG
Right flanking sequence: Indices 93083 -- 93582
TCATCATTATCTCAATATCTCAACATCTCAACATCTCACCATCTCACTATCTCACCATCTCACCA
TCTCATTTCGTCGCTATCTCATTTCGTCGCTCATTGTCACTACTCTCGCCTATCCTTCCACATAT
ATTCATGCTACCTAGTTGCCAATGTTGAGAATGCCCTTGCGGTCGTAGACACCAGGACACCGGAG
ATACGGGTCCAACGCAATGTAGTTGTTCAGGAGCAACGTGCCCAACCCGATCTTCTCCTCCAAGT
ACTTCAGCAGCACCTCGGGGTTGGTACACTCCACCCACCGGCGGGTGGCGTCGAGGAACCGCATG
TACAACACGTCCCGCTCGCGCATGAGCCGGGCGTAGGTGGCGTCTCTGTCCTTGGGCGGGAGGTC
GTCGCCCTGCTGGGGCTTCGGGTAGTCGGGACCCAGCCCGTCGGTGCCGCCAAACAGCACGGGAA
TGTCCTCCTTGGGGATGAACCGGTTGATCTCCTTGAAGTTCTTGC
Found at i:93103 original size:8 final size:8
Alignment explanation
Indices: 93076--93136 Score: 50
Period size: 8 Copynumber: 7.2 Consensus size: 8
93066 ACAATATCCA
93076 CAATATCT
1 CAATATCT
93084 CATCATTATCT
1 CA--A-TATCT
93095 CAATATCT
1 CAATATCT
*
93103 CAACATCT
1 CAATATCT
*
93111 CAACATCT
1 CAATATCT
**
93119 CACCATCT
1 CAATATCT
*
93127 CACTATCT
1 CAATATCT
93135 CA
1 CA
93137 CCATCTCACC
Statistics
Matches: 47, Mismatches: 3, Indels: 6
0.84 0.05 0.11
Matches are distributed among these distances:
8 38 0.81
9 1 0.02
10 1 0.02
11 7 0.15
ACGTcount: A:0.33, C:0.34, G:0.00, T:0.33
Consensus pattern (8 bp):
CAATATCT
Left flanking sequence: Indices 92576 -- 93075
CTGGTGAAGTTTGGCGGGTTCCCTCGCAAGCCCGACGACATTGTGCCTGTGATGCCCGCCAACCA
GCTTGCGCGGGTGATTCCGTTGTCGCTGGAGGTGAAGGCGGAGCTCAGCCAGTTGAACGAGAAGA
TCTACTACGACTTGCGCAACAACTTTGTCGATATCAACGACTACTGTGCCTTCTACACCAGTTTG
GAGCACATTCTACACGAGTTGATGGACTACATCAACCAGGGGTAACCCATTATTTATTAGCCTGG
CTGCTACTATTTATTTCTGTCCGTGGTGTCACGAGGCAGTATGTATTTATACAAACTATGCTTGA
TATCAAGAGTCGTTAGTTCCATCCAAATAGGATTGGGTCAACAGTACCTCAACGTATCAACAATA
TCAACAATATCAACATTATCAACAATATCAACATATCAACAATATCAACAACATCAACAACATCA
ACATTATCAAAAATATCACAACATCAACATTATCAACAATATCCA
Right flanking sequence: Indices 93137 -- 93636
CCATCTCACCATCTCATTTCGTCGCTATCTCATTTCGTCGCTCATTGTCACTACTCTCGCCTATC
CTTCCACATATATTCATGCTACCTAGTTGCCAATGTTGAGAATGCCCTTGCGGTCGTAGACACCA
GGACACCGGAGATACGGGTCCAACGCAATGTAGTTGTTCAGGAGCAACGTGCCCAACCCGATCTT
CTCCTCCAAGTACTTCAGCAGCACCTCGGGGTTGGTACACTCCACCCACCGGCGGGTGGCGTCGA
GGAACCGCATGTACAACACGTCCCGCTCGCGCATGAGCCGGGCGTAGGTGGCGTCTCTGTCCTTG
GGCGGGAGGTCGTCGCCCTGCTGGGGCTTCGGGTAGTCGGGACCCAGCCCGTCGGTGCCGCCAAA
CAGCACGGGAATGTCCTCCTTGGGGATGAACCGGTTGATCTCCTTGAAGTTCTTGCAGAAGTGGA
TCTTGGCCGCCACCCCGGGGTCGATCCAGTGCTTGATGATGTTCC
Found at i:93137 original size:8 final size:8
Alignment explanation
Indices: 93099--93152 Score: 81
Period size: 8 Copynumber: 6.8 Consensus size: 8
93089 TTATCTCAAT
*
93099 ATCTCAAC
1 ATCTCACC
*
93107 ATCTCAAC
1 ATCTCACC
93115 ATCTCACC
1 ATCTCACC
*
93123 ATCTCACT
1 ATCTCACC
93131 ATCTCACC
1 ATCTCACC
93139 ATCTCACC
1 ATCTCACC
93147 ATCTCA
1 ATCTCA
93153 TTTCGTCGCT
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
8 43 1.00
ACGTcount: A:0.30, C:0.43, G:0.00, T:0.28
Consensus pattern (8 bp):
ATCTCACC
Left flanking sequence: Indices 92599 -- 93098
TCGCAAGCCCGACGACATTGTGCCTGTGATGCCCGCCAACCAGCTTGCGCGGGTGATTCCGTTGT
CGCTGGAGGTGAAGGCGGAGCTCAGCCAGTTGAACGAGAAGATCTACTACGACTTGCGCAACAAC
TTTGTCGATATCAACGACTACTGTGCCTTCTACACCAGTTTGGAGCACATTCTACACGAGTTGAT
GGACTACATCAACCAGGGGTAACCCATTATTTATTAGCCTGGCTGCTACTATTTATTTCTGTCCG
TGGTGTCACGAGGCAGTATGTATTTATACAAACTATGCTTGATATCAAGAGTCGTTAGTTCCATC
CAAATAGGATTGGGTCAACAGTACCTCAACGTATCAACAATATCAACAATATCAACATTATCAAC
AATATCAACATATCAACAATATCAACAACATCAACAACATCAACATTATCAAAAATATCACAACA
TCAACATTATCAACAATATCCACAATATCTCATCATTATCTCAAT
Right flanking sequence: Indices 93153 -- 93652
TTTCGTCGCTATCTCATTTCGTCGCTCATTGTCACTACTCTCGCCTATCCTTCCACATATATTCA
TGCTACCTAGTTGCCAATGTTGAGAATGCCCTTGCGGTCGTAGACACCAGGACACCGGAGATACG
GGTCCAACGCAATGTAGTTGTTCAGGAGCAACGTGCCCAACCCGATCTTCTCCTCCAAGTACTTC
AGCAGCACCTCGGGGTTGGTACACTCCACCCACCGGCGGGTGGCGTCGAGGAACCGCATGTACAA
CACGTCCCGCTCGCGCATGAGCCGGGCGTAGGTGGCGTCTCTGTCCTTGGGCGGGAGGTCGTCGC
CCTGCTGGGGCTTCGGGTAGTCGGGACCCAGCCCGTCGGTGCCGCCAAACAGCACGGGAATGTCC
TCCTTGGGGATGAACCGGTTGATCTCCTTGAAGTTCTTGCAGAAGTGGATCTTGGCCGCCACCCC
GGGGTCGATCCAGTGCTTGATGATGTTCCACACGGTGGAGAAGAT
Found at i:93145 original size:16 final size:16
Alignment explanation
Indices: 93091--93152 Score: 81
Period size: 16 Copynumber: 3.9 Consensus size: 16
93081 TCTCATCATT
* *
93091 ATCTCAATATCTCAAC
1 ATCTCACTATCTCACC
93107 ATCTCAAC-ATCTCACC
1 ATCTC-ACTATCTCACC
93123 ATCTCACTATCTCACC
1 ATCTCACTATCTCACC
*
93139 ATCTCACCATCTCA
1 ATCTCACTATCTCA
93153 TTTCGTCGCT
Statistics
Matches: 41, Mismatches: 3, Indels: 4
0.85 0.06 0.08
Matches are distributed among these distances:
15 2 0.05
16 38 0.93
17 1 0.02
ACGTcount: A:0.31, C:0.40, G:0.00, T:0.29
Consensus pattern (16 bp):
ATCTCACTATCTCACC
Left flanking sequence: Indices 92591 -- 93090
GGGTTCCCTCGCAAGCCCGACGACATTGTGCCTGTGATGCCCGCCAACCAGCTTGCGCGGGTGAT
TCCGTTGTCGCTGGAGGTGAAGGCGGAGCTCAGCCAGTTGAACGAGAAGATCTACTACGACTTGC
GCAACAACTTTGTCGATATCAACGACTACTGTGCCTTCTACACCAGTTTGGAGCACATTCTACAC
GAGTTGATGGACTACATCAACCAGGGGTAACCCATTATTTATTAGCCTGGCTGCTACTATTTATT
TCTGTCCGTGGTGTCACGAGGCAGTATGTATTTATACAAACTATGCTTGATATCAAGAGTCGTTA
GTTCCATCCAAATAGGATTGGGTCAACAGTACCTCAACGTATCAACAATATCAACAATATCAACA
TTATCAACAATATCAACATATCAACAATATCAACAACATCAACAACATCAACATTATCAAAAATA
TCACAACATCAACATTATCAACAATATCCACAATATCTCATCATT
Right flanking sequence: Indices 93153 -- 93652
TTTCGTCGCTATCTCATTTCGTCGCTCATTGTCACTACTCTCGCCTATCCTTCCACATATATTCA
TGCTACCTAGTTGCCAATGTTGAGAATGCCCTTGCGGTCGTAGACACCAGGACACCGGAGATACG
GGTCCAACGCAATGTAGTTGTTCAGGAGCAACGTGCCCAACCCGATCTTCTCCTCCAAGTACTTC
AGCAGCACCTCGGGGTTGGTACACTCCACCCACCGGCGGGTGGCGTCGAGGAACCGCATGTACAA
CACGTCCCGCTCGCGCATGAGCCGGGCGTAGGTGGCGTCTCTGTCCTTGGGCGGGAGGTCGTCGC
CCTGCTGGGGCTTCGGGTAGTCGGGACCCAGCCCGTCGGTGCCGCCAAACAGCACGGGAATGTCC
TCCTTGGGGATGAACCGGTTGATCTCCTTGAAGTTCTTGCAGAAGTGGATCTTGGCCGCCACCCC
GGGGTCGATCCAGTGCTTGATGATGTTCCACACGGTGGAGAAGAT
Found at i:93166 original size:16 final size:16
Alignment explanation
Indices: 93147--93178 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
93137 CCATCTCACC
93147 ATCTCATTTCGTCGCT
1 ATCTCATTTCGTCGCT
93163 ATCTCATTTCGTCGCT
1 ATCTCATTTCGTCGCT
93179 CATTGTCACT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.12, C:0.31, G:0.12, T:0.44
Consensus pattern (16 bp):
ATCTCATTTCGTCGCT
Left flanking sequence: Indices 92647 -- 93146
GCGGGTGATTCCGTTGTCGCTGGAGGTGAAGGCGGAGCTCAGCCAGTTGAACGAGAAGATCTACT
ACGACTTGCGCAACAACTTTGTCGATATCAACGACTACTGTGCCTTCTACACCAGTTTGGAGCAC
ATTCTACACGAGTTGATGGACTACATCAACCAGGGGTAACCCATTATTTATTAGCCTGGCTGCTA
CTATTTATTTCTGTCCGTGGTGTCACGAGGCAGTATGTATTTATACAAACTATGCTTGATATCAA
GAGTCGTTAGTTCCATCCAAATAGGATTGGGTCAACAGTACCTCAACGTATCAACAATATCAACA
ATATCAACATTATCAACAATATCAACATATCAACAATATCAACAACATCAACAACATCAACATTA
TCAAAAATATCACAACATCAACATTATCAACAATATCCACAATATCTCATCATTATCTCAATATC
TCAACATCTCAACATCTCACCATCTCACTATCTCACCATCTCACC
Right flanking sequence: Indices 93179 -- 93678
CATTGTCACTACTCTCGCCTATCCTTCCACATATATTCATGCTACCTAGTTGCCAATGTTGAGAA
TGCCCTTGCGGTCGTAGACACCAGGACACCGGAGATACGGGTCCAACGCAATGTAGTTGTTCAGG
AGCAACGTGCCCAACCCGATCTTCTCCTCCAAGTACTTCAGCAGCACCTCGGGGTTGGTACACTC
CACCCACCGGCGGGTGGCGTCGAGGAACCGCATGTACAACACGTCCCGCTCGCGCATGAGCCGGG
CGTAGGTGGCGTCTCTGTCCTTGGGCGGGAGGTCGTCGCCCTGCTGGGGCTTCGGGTAGTCGGGA
CCCAGCCCGTCGGTGCCGCCAAACAGCACGGGAATGTCCTCCTTGGGGATGAACCGGTTGATCTC
CTTGAAGTTCTTGCAGAAGTGGATCTTGGCCGCCACCCCGGGGTCGATCCAGTGCTTGATGATGT
TCCACACGGTGGAGAAGATCCACGGCGCGTTGTAGATGATCAAGA
Found at i:96202 original size:16 final size:16
Alignment explanation
Indices: 96181--96225 Score: 63
Period size: 16 Copynumber: 2.8 Consensus size: 16
96171 CGTCGTTCGC
* *
96181 TACCACCAAACCATTG
1 TACCACCAAACCACTA
96197 TACCACCAAACCACTA
1 TACCACCAAACCACTA
*
96213 TACTACCAAACCA
1 TACCACCAAACCA
96226 AACCATCAGA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 26 1.00
ACGTcount: A:0.42, C:0.40, G:0.02, T:0.16
Consensus pattern (16 bp):
TACCACCAAACCACTA
Left flanking sequence: Indices 95681 -- 96180
TGGCTGCTGCCCAAAGCGACCATCGCGGTTATCTATGCACGTGCGCATGCTTGGAATTCGGGTTC
CAAATAATATTCGACGAACACGGTTGCAGATACGATCGGGCCATCGCTTAGGGCTAACGGTGGCC
AGATCGTCCGGGCGAAGATCGGGGGCAAGCGTGTGAAGAATTGGGCGATTTGCAAACGGTTTGGT
TTTGTGACCTCGGCAAGCTGCGGGGAGGTGACAATAGTGGACGCTCGTAATCGCAGGAGCGGGGG
ATAGGGGTGGAAAAGACACGCAGTGAGTGTGATAATTCCGGGTGCGTTCCCCAGAGTTTAGCTAG
ATAGTGTACTTGACGTGCTGGTAGGGGAAGGATTTGCTATGTGCTATTTACTGTGTTTAATCGGT
TTAGGTGAAGGACTATTGCTAGTTTCGAGTCAAACCGCCCAACGATCGCTGCTGCTCCATTGTGC
CACTCAAACCCCGATTAAGCCAGTCTTTCCTCTTTCGTCGTTCGC
Right flanking sequence: Indices 96226 -- 96725
AACCATCAGACCGCAAACTACTATACCAAGAAATCACTATTACACCAGATCACCAGATCACTAGA
CCACCAAACCAATGTATCACCAAACCAACAACCACACCACTACACCACTCTACCACTCTACCACT
ACACCACTACCACTATACCACTATACCACCAACTCACCTTACCAAATTACCAAACCATCAAACCA
TCAAAGCACCAAAATACTATACTACTTACCACTATACTACCTATTACTATACTACCTAACAACTA
CACCACCAATCCACTATACCACCACCAAACCATTACACCACCAAACCATTACACCACTACCACAA
CCACAAGCACTCTACTTCTTTTCTTCTATTCCACCCCTTCAATACGGTTCATAAATCACTATTTA
TCAATATCTAGTCGTATAAAAACTAATTGGCCACCGTCAAGGTACCATTACGGTCATAAAGGCCC
GGGTTCCGAATATACGGGTCCAAGGCAATGTAGTTGTTCAGGAGC
Found at i:96337 original size:8 final size:8
Alignment explanation
Indices: 96324--96384 Score: 58
Period size: 8 Copynumber: 7.9 Consensus size: 8
96314 ACCAACAACC
96324 ACACCACT
1 ACACCACT
96332 ACACCACT
1 ACACCACT
96340 -CTACCACT
1 AC-ACCACT
96348 -CTACCACT
1 AC-ACCACT
96356 ACACCACT
1 ACACCACT
96364 --ACCACT
1 ACACCACT
*
96370 ATACCACT
1 ACACCACT
*
96378 ATACCAC
1 ACACCAC
96385 CAACTCACCT
Statistics
Matches: 49, Mismatches: 0, Indels: 8
0.86 0.00 0.14
Matches are distributed among these distances:
6 6 0.12
7 1 0.02
8 41 0.84
9 1 0.02
ACGTcount: A:0.34, C:0.48, G:0.00, T:0.18
Consensus pattern (8 bp):
ACACCACT
Left flanking sequence: Indices 95824 -- 96323
GAAGATCGGGGGCAAGCGTGTGAAGAATTGGGCGATTTGCAAACGGTTTGGTTTTGTGACCTCGG
CAAGCTGCGGGGAGGTGACAATAGTGGACGCTCGTAATCGCAGGAGCGGGGGATAGGGGTGGAAA
AGACACGCAGTGAGTGTGATAATTCCGGGTGCGTTCCCCAGAGTTTAGCTAGATAGTGTACTTGA
CGTGCTGGTAGGGGAAGGATTTGCTATGTGCTATTTACTGTGTTTAATCGGTTTAGGTGAAGGAC
TATTGCTAGTTTCGAGTCAAACCGCCCAACGATCGCTGCTGCTCCATTGTGCCACTCAAACCCCG
ATTAAGCCAGTCTTTCCTCTTTCGTCGTTCGCTACCACCAAACCATTGTACCACCAAACCACTAT
ACTACCAAACCAAACCATCAGACCGCAAACTACTATACCAAGAAATCACTATTACACCAGATCAC
CAGATCACTAGACCACCAAACCAATGTATCACCAAACCAACAACC
Right flanking sequence: Indices 96385 -- 96884
CAACTCACCTTACCAAATTACCAAACCATCAAACCATCAAAGCACCAAAATACTATACTACTTAC
CACTATACTACCTATTACTATACTACCTAACAACTACACCACCAATCCACTATACCACCACCAAA
CCATTACACCACCAAACCATTACACCACTACCACAACCACAAGCACTCTACTTCTTTTCTTCTAT
TCCACCCCTTCAATACGGTTCATAAATCACTATTTATCAATATCTAGTCGTATAAAAACTAATTG
GCCACCGTCAAGGTACCATTACGGTCATAAAGGCCCGGGTTCCGAATATACGGGTCCAAGGCAAT
GTAGTTGTTCAGGAGCGCAATATTAAGGGCAATGCGCTCGCGCAAGTACCCCTCGCTCTCCTCGG
GGTCAATCGCCTCCACCCACTTGATCAGCGCCGAAAGGTACTTCATCAAGAGGTTGTCGCGCTCG
ATGCGGAGCCGGCGGTACTCGCGGTCCTTGGTCTTGGGCGGCCAC
Found at i:96365 original size:14 final size:14
Alignment explanation
Indices: 96321--96378 Score: 54
Period size: 14 Copynumber: 4.5 Consensus size: 14
96311 CAAACCAACA
96321 ACCAC-ACCACTAC
1 ACCACTACCACTAC
*
96334 ACCACT-CTAC--C
1 ACCACTACCACTAC
*
96345 A-CTCTACCACTAC
1 ACCACTACCACTAC
*
96358 ACCACTACCACTAT
1 ACCACTACCACTAC
96372 ACCACTA
1 ACCACTA
96379 TACCACCAAC
Statistics
Matches: 35, Mismatches: 5, Indels: 9
0.71 0.10 0.18
Matches are distributed among these distances:
10 3 0.09
11 5 0.14
13 10 0.29
14 17 0.49
ACGTcount: A:0.34, C:0.48, G:0.00, T:0.17
Consensus pattern (14 bp):
ACCACTACCACTAC
Left flanking sequence: Indices 95821 -- 96320
GGCGAAGATCGGGGGCAAGCGTGTGAAGAATTGGGCGATTTGCAAACGGTTTGGTTTTGTGACCT
CGGCAAGCTGCGGGGAGGTGACAATAGTGGACGCTCGTAATCGCAGGAGCGGGGGATAGGGGTGG
AAAAGACACGCAGTGAGTGTGATAATTCCGGGTGCGTTCCCCAGAGTTTAGCTAGATAGTGTACT
TGACGTGCTGGTAGGGGAAGGATTTGCTATGTGCTATTTACTGTGTTTAATCGGTTTAGGTGAAG
GACTATTGCTAGTTTCGAGTCAAACCGCCCAACGATCGCTGCTGCTCCATTGTGCCACTCAAACC
CCGATTAAGCCAGTCTTTCCTCTTTCGTCGTTCGCTACCACCAAACCATTGTACCACCAAACCAC
TATACTACCAAACCAAACCATCAGACCGCAAACTACTATACCAAGAAATCACTATTACACCAGAT
CACCAGATCACTAGACCACCAAACCAATGTATCACCAAACCAACA
Right flanking sequence: Indices 96379 -- 96878
TACCACCAACTCACCTTACCAAATTACCAAACCATCAAACCATCAAAGCACCAAAATACTATACT
ACTTACCACTATACTACCTATTACTATACTACCTAACAACTACACCACCAATCCACTATACCACC
ACCAAACCATTACACCACCAAACCATTACACCACTACCACAACCACAAGCACTCTACTTCTTTTC
TTCTATTCCACCCCTTCAATACGGTTCATAAATCACTATTTATCAATATCTAGTCGTATAAAAAC
TAATTGGCCACCGTCAAGGTACCATTACGGTCATAAAGGCCCGGGTTCCGAATATACGGGTCCAA
GGCAATGTAGTTGTTCAGGAGCGCAATATTAAGGGCAATGCGCTCGCGCAAGTACCCCTCGCTCT
CCTCGGGGTCAATCGCCTCCACCCACTTGATCAGCGCCGAAAGGTACTTCATCAAGAGGTTGTCG
CGCTCGATGCGGAGCCGGCGGTACTCGCGGTCCTTGGTCTTGGGC
Found at i:96383 original size:22 final size:22
Alignment explanation
Indices: 96341--96384 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
96331 TACACCACTC
*
96341 TACCACTCTACCACTACACCAC
1 TACCACTATACCACTACACCAC
*
96363 TACCACTATACCACTATACCAC
1 TACCACTATACCACTACACCAC
96385 CAACTCACCT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.34, C:0.45, G:0.00, T:0.20
Consensus pattern (22 bp):
TACCACTATACCACTACACCAC
Left flanking sequence: Indices 95841 -- 96340
GTGTGAAGAATTGGGCGATTTGCAAACGGTTTGGTTTTGTGACCTCGGCAAGCTGCGGGGAGGTG
ACAATAGTGGACGCTCGTAATCGCAGGAGCGGGGGATAGGGGTGGAAAAGACACGCAGTGAGTGT
GATAATTCCGGGTGCGTTCCCCAGAGTTTAGCTAGATAGTGTACTTGACGTGCTGGTAGGGGAAG
GATTTGCTATGTGCTATTTACTGTGTTTAATCGGTTTAGGTGAAGGACTATTGCTAGTTTCGAGT
CAAACCGCCCAACGATCGCTGCTGCTCCATTGTGCCACTCAAACCCCGATTAAGCCAGTCTTTCC
TCTTTCGTCGTTCGCTACCACCAAACCATTGTACCACCAAACCACTATACTACCAAACCAAACCA
TCAGACCGCAAACTACTATACCAAGAAATCACTATTACACCAGATCACCAGATCACTAGACCACC
AAACCAATGTATCACCAAACCAACAACCACACCACTACACCACTC
Right flanking sequence: Indices 96385 -- 96884
CAACTCACCTTACCAAATTACCAAACCATCAAACCATCAAAGCACCAAAATACTATACTACTTAC
CACTATACTACCTATTACTATACTACCTAACAACTACACCACCAATCCACTATACCACCACCAAA
CCATTACACCACCAAACCATTACACCACTACCACAACCACAAGCACTCTACTTCTTTTCTTCTAT
TCCACCCCTTCAATACGGTTCATAAATCACTATTTATCAATATCTAGTCGTATAAAAACTAATTG
GCCACCGTCAAGGTACCATTACGGTCATAAAGGCCCGGGTTCCGAATATACGGGTCCAAGGCAAT
GTAGTTGTTCAGGAGCGCAATATTAAGGGCAATGCGCTCGCGCAAGTACCCCTCGCTCTCCTCGG
GGTCAATCGCCTCCACCCACTTGATCAGCGCCGAAAGGTACTTCATCAAGAGGTTGTCGCGCTCG
ATGCGGAGCCGGCGGTACTCGCGGTCCTTGGTCTTGGGCGGCCAC
Found at i:96456 original size:15 final size:15
Alignment explanation
Indices: 96436--96478 Score: 59
Period size: 15 Copynumber: 2.9 Consensus size: 15
96426 GCACCAAAAT
*
96436 ACTATACTACTTACC
1 ACTATACTACCTACC
**
96451 ACTATACTACCTATT
1 ACTATACTACCTACC
96466 ACTATACTACCTA
1 ACTATACTACCTA
96479 ACAACTACAC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 25 1.00
ACGTcount: A:0.35, C:0.30, G:0.00, T:0.35
Consensus pattern (15 bp):
ACTATACTACCTACC
Left flanking sequence: Indices 95936 -- 96435
GGGGGATAGGGGTGGAAAAGACACGCAGTGAGTGTGATAATTCCGGGTGCGTTCCCCAGAGTTTA
GCTAGATAGTGTACTTGACGTGCTGGTAGGGGAAGGATTTGCTATGTGCTATTTACTGTGTTTAA
TCGGTTTAGGTGAAGGACTATTGCTAGTTTCGAGTCAAACCGCCCAACGATCGCTGCTGCTCCAT
TGTGCCACTCAAACCCCGATTAAGCCAGTCTTTCCTCTTTCGTCGTTCGCTACCACCAAACCATT
GTACCACCAAACCACTATACTACCAAACCAAACCATCAGACCGCAAACTACTATACCAAGAAATC
ACTATTACACCAGATCACCAGATCACTAGACCACCAAACCAATGTATCACCAAACCAACAACCAC
ACCACTACACCACTCTACCACTCTACCACTACACCACTACCACTATACCACTATACCACCAACTC
ACCTTACCAAATTACCAAACCATCAAACCATCAAAGCACCAAAAT
Right flanking sequence: Indices 96479 -- 96978
ACAACTACACCACCAATCCACTATACCACCACCAAACCATTACACCACCAAACCATTACACCACT
ACCACAACCACAAGCACTCTACTTCTTTTCTTCTATTCCACCCCTTCAATACGGTTCATAAATCA
CTATTTATCAATATCTAGTCGTATAAAAACTAATTGGCCACCGTCAAGGTACCATTACGGTCATA
AAGGCCCGGGTTCCGAATATACGGGTCCAAGGCAATGTAGTTGTTCAGGAGCGCAATATTAAGGG
CAATGCGCTCGCGCAAGTACCCCTCGCTCTCCTCGGGGTCAATCGCCTCCACCCACTTGATCAGC
GCCGAAAGGTACTTCATCAAGAGGTTGTCGCGCTCGATGCGGAGCCGGCGGTACTCGCGGTCCTT
GGTCTTGGGCGGCCACTGGTCGCCAGCACGCGGCACCGGGTACTGGCCGCCCATCAGCGCCCGCC
CGCCGTGCTCCACCGGAATGAACTCGGGGTCGACGTGGGCACAGA
Found at i:96501 original size:16 final size:16
Alignment explanation
Indices: 96482--96542 Score: 68
Period size: 16 Copynumber: 3.6 Consensus size: 16
96472 CTACCTAACA
*
96482 ACTACACCACCAATCC
1 ACTACACCACCAAACC
96498 ACTATACCACCACCAAACC
1 AC--TA-CACCACCAAACC
*
96517 ATTACACCACCAAACC
1 ACTACACCACCAAACC
*
96533 ATTACACCAC
1 ACTACACCAC
96543 TACCACAACC
Statistics
Matches: 40, Mismatches: 2, Indels: 6
0.83 0.04 0.12
Matches are distributed among these distances:
16 24 0.60
17 2 0.05
18 2 0.05
19 12 0.30
ACGTcount: A:0.41, C:0.46, G:0.00, T:0.13
Consensus pattern (16 bp):
ACTACACCACCAAACC
Left flanking sequence: Indices 95982 -- 96481
GTGCGTTCCCCAGAGTTTAGCTAGATAGTGTACTTGACGTGCTGGTAGGGGAAGGATTTGCTATG
TGCTATTTACTGTGTTTAATCGGTTTAGGTGAAGGACTATTGCTAGTTTCGAGTCAAACCGCCCA
ACGATCGCTGCTGCTCCATTGTGCCACTCAAACCCCGATTAAGCCAGTCTTTCCTCTTTCGTCGT
TCGCTACCACCAAACCATTGTACCACCAAACCACTATACTACCAAACCAAACCATCAGACCGCAA
ACTACTATACCAAGAAATCACTATTACACCAGATCACCAGATCACTAGACCACCAAACCAATGTA
TCACCAAACCAACAACCACACCACTACACCACTCTACCACTCTACCACTACACCACTACCACTAT
ACCACTATACCACCAACTCACCTTACCAAATTACCAAACCATCAAACCATCAAAGCACCAAAATA
CTATACTACTTACCACTATACTACCTATTACTATACTACCTAACA
Right flanking sequence: Indices 96543 -- 97042
TACCACAACCACAAGCACTCTACTTCTTTTCTTCTATTCCACCCCTTCAATACGGTTCATAAATC
ACTATTTATCAATATCTAGTCGTATAAAAACTAATTGGCCACCGTCAAGGTACCATTACGGTCAT
AAAGGCCCGGGTTCCGAATATACGGGTCCAAGGCAATGTAGTTGTTCAGGAGCGCAATATTAAGG
GCAATGCGCTCGCGCAAGTACCCCTCGCTCTCCTCGGGGTCAATCGCCTCCACCCACTTGATCAG
CGCCGAAAGGTACTTCATCAAGAGGTTGTCGCGCTCGATGCGGAGCCGGCGGTACTCGCGGTCCT
TGGTCTTGGGCGGCCACTGGTCGCCAGCACGCGGCACCGGGTACTGGCCGCCCATCAGCGCCCGC
CCGCCGTGCTCCACCGGAATGAACTCGGGGTCGACGTGGGCACAGAACTCGTTGTAGCTCTTGAT
AAAGTGGATCTTCAGCGCCACCACCGGGTCCAACCAGTGCTTGAT
Found at i:96510 original size:19 final size:19
Alignment explanation
Indices: 96486--96554 Score: 63
Period size: 19 Copynumber: 3.7 Consensus size: 19
96476 CTAACAACTA
* *
96486 CACCACCAATCCACTATAC
1 CACCACCAAACCACTACAC
*
96505 CACCACCAAACCA-T-TA-
1 CACCACCAAACCACTACAC
*
96521 CACCACCAAACCATTACAC
1 CACCACCAAACCACTACAC
*
96540 CACTACCACAACCAC
1 CACCACCA-AACCAC
96555 AAGCACTCTA
Statistics
Matches: 42, Mismatches: 4, Indels: 7
0.79 0.08 0.13
Matches are distributed among these distances:
16 13 0.31
17 3 0.07
18 2 0.05
19 19 0.45
20 5 0.12
ACGTcount: A:0.41, C:0.48, G:0.00, T:0.12
Consensus pattern (19 bp):
CACCACCAAACCACTACAC
Left flanking sequence: Indices 95986 -- 96485
GTTCCCCAGAGTTTAGCTAGATAGTGTACTTGACGTGCTGGTAGGGGAAGGATTTGCTATGTGCT
ATTTACTGTGTTTAATCGGTTTAGGTGAAGGACTATTGCTAGTTTCGAGTCAAACCGCCCAACGA
TCGCTGCTGCTCCATTGTGCCACTCAAACCCCGATTAAGCCAGTCTTTCCTCTTTCGTCGTTCGC
TACCACCAAACCATTGTACCACCAAACCACTATACTACCAAACCAAACCATCAGACCGCAAACTA
CTATACCAAGAAATCACTATTACACCAGATCACCAGATCACTAGACCACCAAACCAATGTATCAC
CAAACCAACAACCACACCACTACACCACTCTACCACTCTACCACTACACCACTACCACTATACCA
CTATACCACCAACTCACCTTACCAAATTACCAAACCATCAAACCATCAAAGCACCAAAATACTAT
ACTACTTACCACTATACTACCTATTACTATACTACCTAACAACTA
Right flanking sequence: Indices 96555 -- 97054
AAGCACTCTACTTCTTTTCTTCTATTCCACCCCTTCAATACGGTTCATAAATCACTATTTATCAA
TATCTAGTCGTATAAAAACTAATTGGCCACCGTCAAGGTACCATTACGGTCATAAAGGCCCGGGT
TCCGAATATACGGGTCCAAGGCAATGTAGTTGTTCAGGAGCGCAATATTAAGGGCAATGCGCTCG
CGCAAGTACCCCTCGCTCTCCTCGGGGTCAATCGCCTCCACCCACTTGATCAGCGCCGAAAGGTA
CTTCATCAAGAGGTTGTCGCGCTCGATGCGGAGCCGGCGGTACTCGCGGTCCTTGGTCTTGGGCG
GCCACTGGTCGCCAGCACGCGGCACCGGGTACTGGCCGCCCATCAGCGCCCGCCCGCCGTGCTCC
ACCGGAATGAACTCGGGGTCGACGTGGGCACAGAACTCGTTGTAGCTCTTGATAAAGTGGATCTT
CAGCGCCACCACCGGGTCCAACCAGTGCTTGATCACGCTCCACAC
Found at i:96542 original size:35 final size:36
Alignment explanation
Indices: 96484--96553 Score: 97
Period size: 35 Copynumber: 2.0 Consensus size: 36
96474 ACCTAACAAC
* *
96484 TACACCACCAATCCACTATACCACCACCA-AACCAT
1 TACACCACCAAACCACTACACCACCACCACAACCAT
* *
96519 TACACCACCAAACCATTACACCACTACCACAACCA
1 TACACCACCAAACCACTACACCACCACCACAACCA
96554 CAAGCACTCT
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
35 25 0.83
36 5 0.17
ACGTcount: A:0.41, C:0.46, G:0.00, T:0.13
Consensus pattern (36 bp):
TACACCACCAAACCACTACACCACCACCACAACCAT
Left flanking sequence: Indices 95984 -- 96483
GCGTTCCCCAGAGTTTAGCTAGATAGTGTACTTGACGTGCTGGTAGGGGAAGGATTTGCTATGTG
CTATTTACTGTGTTTAATCGGTTTAGGTGAAGGACTATTGCTAGTTTCGAGTCAAACCGCCCAAC
GATCGCTGCTGCTCCATTGTGCCACTCAAACCCCGATTAAGCCAGTCTTTCCTCTTTCGTCGTTC
GCTACCACCAAACCATTGTACCACCAAACCACTATACTACCAAACCAAACCATCAGACCGCAAAC
TACTATACCAAGAAATCACTATTACACCAGATCACCAGATCACTAGACCACCAAACCAATGTATC
ACCAAACCAACAACCACACCACTACACCACTCTACCACTCTACCACTACACCACTACCACTATAC
CACTATACCACCAACTCACCTTACCAAATTACCAAACCATCAAACCATCAAAGCACCAAAATACT
ATACTACTTACCACTATACTACCTATTACTATACTACCTAACAAC
Right flanking sequence: Indices 96554 -- 97053
CAAGCACTCTACTTCTTTTCTTCTATTCCACCCCTTCAATACGGTTCATAAATCACTATTTATCA
ATATCTAGTCGTATAAAAACTAATTGGCCACCGTCAAGGTACCATTACGGTCATAAAGGCCCGGG
TTCCGAATATACGGGTCCAAGGCAATGTAGTTGTTCAGGAGCGCAATATTAAGGGCAATGCGCTC
GCGCAAGTACCCCTCGCTCTCCTCGGGGTCAATCGCCTCCACCCACTTGATCAGCGCCGAAAGGT
ACTTCATCAAGAGGTTGTCGCGCTCGATGCGGAGCCGGCGGTACTCGCGGTCCTTGGTCTTGGGC
GGCCACTGGTCGCCAGCACGCGGCACCGGGTACTGGCCGCCCATCAGCGCCCGCCCGCCGTGCTC
CACCGGAATGAACTCGGGGTCGACGTGGGCACAGAACTCGTTGTAGCTCTTGATAAAGTGGATCT
TCAGCGCCACCACCGGGTCCAACCAGTGCTTGATCACGCTCCACA
Found at i:100238 original size:11 final size:11
Alignment explanation
Indices: 100226--100273 Score: 62
Period size: 11 Copynumber: 4.5 Consensus size: 11
100216 GCTATGCTCG
*
100226 GAGCAGACTCG
1 GAGCAGACTCA
100237 GAGC-GACTCA
1 GAGCAGACTCA
100247 GAGCAGACTCA
1 GAGCAGACTCA
*
100258 CAGCAGACTCA
1 GAGCAGACTCA
*
100269 CAGCA
1 GAGCA
100274 CCCGCTCCTC
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
10 9 0.26
11 25 0.74
ACGTcount: A:0.33, C:0.31, G:0.27, T:0.08
Consensus pattern (11 bp):
GAGCAGACTCA
Left flanking sequence: Indices 99726 -- 100225
ACCCTCCACTTGGTTCTCAGATTGAGAGGTGGTGGTAAGAAGAGAAAGAAGAAGGTCTACACCAC
CCCCAAGAAGATCAAGCACAAGCACAGAAAGCACAAGTTGGCTGTCTTGACTTACTACAAGGTTG
ACGGTGAGGGCCGTGTCGAGAGACTCAAGCGTGAGTGTCCCGCTTCCACCTGTGGTGCCGGTGTC
TTCATGGCCAACATGAAGGACAGACAGTACTGCGGTAAGTGCCACTTGACCTTGAAGGCTAACTA
AGTTATGTATTAATCGATGTTAGTACTCAGAAATGTGTAGAGCGTAGGACTGGGTAGAGTCTAGA
CCAGCAAAGCCCCGATGCTGATCTGATCTAACTCCGATGCGTTCCATTGTGTATGTGGCATGTGG
ACTGGTTTGGTGCACGGTGTGGGTAGAGGCCCTGATGTGAGTCTAGATTCAGGTTCCAGATAAAG
GCTCCAAATACAGGCTAGACCAAAGACAGTCTTTAGCTATGCTCG
Right flanking sequence: Indices 100274 -- 100773
CCCGCTCCTCAGACAGTCACCTCTCTTTCGTGACCACCATCTCCATCCTCTTCCCCTTTCAGTAG
CCACCTTACCAAAACAGACCGACCACGGACACCATGTAAGCCTCGAGGCGCCAGCTCGGACTCCG
CTGACTCCGTCCTGACACTCCCCGACGTTTTCCGCCCGTTTCTCGCCTCTTTCCGCGTCTTTTCT
GCCCGGTGTCTACTCCACTTCTCGCACCCTACTCGCGTACCTCCCCGCGCATACCCCACCACCAC
GGCCTTTGAACGCCTATCCAGAACCAGTAGCGTGTCAATTGCCTAAACAAGGTAACTCTGGCCCC
AACCACCGCCTTCCCCGACACTCCACACCCGCGGCAGCGCCAAATCGTGCCACTTCACCCGTCCC
CCTGTCGCATACCATGGGACGATATTTTTCGGTAGTCGCAACCACACACCATGTTACGCTTTGCC
CGAGGTCTTGCCACCCGGACGTTACAGGACGTGGTGATCATTGGC
Found at i:103602 original size:20 final size:20
Alignment explanation
Indices: 103589--103648 Score: 111
Period size: 20 Copynumber: 3.0 Consensus size: 20
103579 TGATCTCTAG
103589 GCTTATCAAGTGATCTACAA
1 GCTTATCAAGTGATCTACAA
*
103609 GCTTATCAAGCGATCTACAA
1 GCTTATCAAGTGATCTACAA
103629 GCTTATCAAGTGATCTACAA
1 GCTTATCAAGTGATCTACAA
103649 CCTATCCTCG
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.35, C:0.22, G:0.15, T:0.28
Consensus pattern (20 bp):
GCTTATCAAGTGATCTACAA
Left flanking sequence: Indices 103089 -- 103588
GATGCACTTGGGCACCTACAAGAAGTTGGCCGCGGAGGGAGTGCACCAGTACTTGGTGCAGCCCG
GTATCTTCACGCTGTTTTCGTTCTTCCAGTTCCTCAACGTGTTCACCTACTACGGGATGATGATG
TTGTTTTACATTGCGCGGTGGTTGGGATCGCCCATCCACAACATTAGCGGCTACATTGCAGCCAA
CGCCCCCGTCAAGTGTGCTACTACCGAGGGGATGCCCCAGGACGAGAAGGTGGGCTCTGCCAGCA
ACCGGCGCGGCCAGGAGTACGTGATGTACCTGGACGTGGATCCTACGGGGGCGGAGGACGTGGTG
GGGTACTTGGACACCCTCACCAAGGAGTGGGACGACGCCTTGCGCGACCAGATCGCTCCTACGAG
AATACATTAGGTTAATATATGGTTAAGAGTAATTTGGGGTGTGAGAATTCCGTGCTGGTGTCTGG
GGTATCCAGGTAGCCCTTGTAGCCTGTATAGCCAGTGATCTCTAG
Right flanking sequence: Indices 103649 -- 104148
CCTATCCTCGTATCTTGTTCATCACCAGAACCAGTCACGTGGGCCCATCAGCCACAGCCACCAGC
ACTCCCACGTGTTGACTCGGCCATACACTCTTCCACCCCTCTCCATCCCCTCTTTACCCGTTATC
CAACCACTCTCCACCTCTCCCCACTCAATCCCACCACACTTGCGCACCATCGCGCACAACGTGTC
TCGCTGCCCACAATAACACTATTGTGACCCTAACGTCATCCTATTGAATTATTTGATAACCACAT
TAAACACACTCCTAAACTTAGCCCCACCGCTCCACCCAACCATCACACCCGCTCCCAATGCCCGA
CGTGTCTCCACATCGTCAAAAGCAACCCCCGTTTCACGTGGTACGTGGCAGTCCCCGTAGCCATC
AATGACTGCAAAAGGCGCGCGCCAAAATTGAAAAACTATTGACGTGTCGCTCATGAAGATCTGGA
TAGCCCTCTTCCTCCACGCGCTCGTGGTGCTAGCAAAGGACTACT
Found at i:107340 original size:14 final size:14
Alignment explanation
Indices: 107321--107407 Score: 174
Period size: 14 Copynumber: 6.2 Consensus size: 14
107311 AAGGAGTAGA
107321 AGAGTAGAGATGGT
1 AGAGTAGAGATGGT
107335 AGAGTAGAGATGGT
1 AGAGTAGAGATGGT
107349 AGAGTAGAGATGGT
1 AGAGTAGAGATGGT
107363 AGAGTAGAGATGGT
1 AGAGTAGAGATGGT
107377 AGAGTAGAGATGGT
1 AGAGTAGAGATGGT
107391 AGAGTAGAGATGGT
1 AGAGTAGAGATGGT
107405 AGA
1 AGA
107408 AGGAGCAGAT
Statistics
Matches: 73, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 73 1.00
ACGTcount: A:0.37, C:0.00, G:0.43, T:0.21
Consensus pattern (14 bp):
AGAGTAGAGATGGT
Left flanking sequence: Indices 106821 -- 107320
TTTGTTGGAGCTCCACGGCGAGGGCCACTTGTTCGCTGGCCAAGACGTTGCCCAGCTCCAGAAGC
CGTTTGTCATGGACGCTTCGTACCCGCTGCGGATCGAGGAGGACCCCTACGAGCACTTGGCGGAG
ACCGAGAAGCTCCTCCAGGGATTGGGGCTCTCCACCTCGTTGCCCGAGCGCCAGGCCATCAGACG
GTTGTCCCAGCTCATTGGGATCCGCTCTGCCCGGTTGTCGGTGTGTGGGATCGCTGCTGCGTGCA
CTAAGCGTGGCTACAAGTCGGGTCACTGTGCGGCCGACGGGTCGCTCTACAACAAGTACCCGCGG
TTTGCTGAGCGGGCAGCCCGGGGGTTGCGGGACATCTTTGAGTGGGCCGACGACATTGAGGACCC
GATCACCATTGTCCACGCCCAAGACGGGCTGGGGGTGGGTGCTGCGGTGATTGCCGCGTTGACCC
AGCAACGGTTGGACAGGGGCCAGTCGGTGGGCGAAAAGGAGTAGA
Right flanking sequence: Indices 107408 -- 107907
AGGAGCAGATGCTAGACAGTTTAATATGACATAGACAGTACTAACGGGGTGGAGATCGATGAAAG
AGTCAATTCGATTGATTGAACACAAGCTGACTAAAATAGACAGTTTGAGTGTTTCCCATAGAAAG
TCGTCATACAAAGTTGTTTCAGTTCCCAGGATCATCTCATACCCCACAAGCTACACTCGGAGTGA
CGTAGAATTGAGTCAAGTTTCCAATAGAAGACTCAGAGCCGGAGCTGCGTCATATCCACACACTC
ACACATTGTAGACTCATAGAATCATTCCCTTTTTCGATCTCCACTGACGAGCCTACACAAAGCAA
GCCTCCGCAGCACGACCTACCACCCAACATGAGACGCGTATATTATAAATAGTACAGGTTCGGAA
TCCAGTTCCAAACGAAGGCTAGTCAGAAATACAGGCCAGGGGTCCCACAGGACAACGTTTAGGTT
CTCAGCTACGCTGGGCCTACACGGACGAGAAGTGGTCGCGCGGGT
Found at i:109820 original size:20 final size:20
Alignment explanation
Indices: 109797--109836 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
109787 TTGTAGCTTG
*
109797 TTGTGGGTCACTGTAGCTCA
1 TTGTGGGTAACTGTAGCTCA
* *
109817 TTGTGGTTAATTGTAGCTCA
1 TTGTGGGTAACTGTAGCTCA
109837 CTGTAACTCT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.17, C:0.15, G:0.28, T:0.40
Consensus pattern (20 bp):
TTGTGGGTAACTGTAGCTCA
Left flanking sequence: Indices 109297 -- 109796
CGTGCCGCTTGAGGTACCTCCGCGTCTTTTCGATCACCTCGGGGGTGATGTCCTCGATGGCCATC
CCCAGCGGGAGCATCGCGAGCTCGCCCGACAGGTCCAGGTGGTCGGTGCCAAACTCGGACTCCGA
GGCCAGGTCGTGGCCCGAGCGGTCCACTGGGTGCGCCACCTCGTCCTCGAACCCGAGCTCGCCCG
TGTCGTCCTCGTCGTCGGACTTGAGGGAAAACCGGTGCTCGGGCTCAACGGGGGTGGCTAGGCGC
GTGGGCTCGGGGGTGTCCAACTTCGGCCGCTTCGCCAGCGCCTGTTCCACCTCGGTGTCCGAGTC
CACCAACACGATATCGTCCCCCTTGGTAGCCATGGCGAGACGTGGGGCGCGCGGCGTTAGATAGA
CGTAGTCACGTGGTGGGAGAAGTGGGCTAGTGCGACGATACGGTGGAGAGTAGGTGATTGGGTTG
TCTAGTTTAGTTTGGTTCGTTGGAGTTGTAGCTCGTTGTAGCTTG
Right flanking sequence: Indices 109837 -- 110336
CTGTAACTCTTCTGGTTTACTGTGATTGTGTACTGTGGTGTGGTGACACAACCGTGTCTGTTTAC
AGTAGACGTGACGCGTGGGGTGATCGGGTCAGGTGCTCACACGACACCACCCAACCAACCACCCA
ACCACACAACACAACACCCTCTACAACCCCCTTGACCCGTCCCGTCCCCCCACCCGGCCCAATGC
CACCGTCCACACCTCTTCCTCCATTTTTCACTCCTGCACACTCCCGCGTGTTTATCTGTCGTTGC
CCAGACCGTCGCTTCCCATGCCATTATACAAGGAAGAAAACTACCTCGTGATCCACCCGGGGTCC
GAGTGGACGCTCTTTTCCTACGGGATCCAGGACCAGCTCGCGCCGCCGCAGTACAAGGTGCCGCT
GCGCGTTTACGCGCGCGCACTGGCCGACAAGACCGAGTACCGTCCGGTGGCCACCGACGGGTTCC
ACGAGGTGGCTCCCATCGTCAAGGGCCGGTTGGTGGAGGTGGACG
Found at i:109976 original size:20 final size:20
Alignment explanation
Indices: 109947--109985 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
109937 CTCACACGAC
*
109947 ACCACCCAAC-CAACCACCCA
1 ACCACACAACACAA-CACCCA
109967 ACCACACAACACAACACCC
1 ACCACACAACACAACACCC
109986 TCTACAACCC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 14 0.82
21 3 0.18
ACGTcount: A:0.44, C:0.56, G:0.00, T:0.00
Consensus pattern (20 bp):
ACCACACAACACAACACCCA
Left flanking sequence: Indices 109447 -- 109946
GGTCCACTGGGTGCGCCACCTCGTCCTCGAACCCGAGCTCGCCCGTGTCGTCCTCGTCGTCGGAC
TTGAGGGAAAACCGGTGCTCGGGCTCAACGGGGGTGGCTAGGCGCGTGGGCTCGGGGGTGTCCAA
CTTCGGCCGCTTCGCCAGCGCCTGTTCCACCTCGGTGTCCGAGTCCACCAACACGATATCGTCCC
CCTTGGTAGCCATGGCGAGACGTGGGGCGCGCGGCGTTAGATAGACGTAGTCACGTGGTGGGAGA
AGTGGGCTAGTGCGACGATACGGTGGAGAGTAGGTGATTGGGTTGTCTAGTTTAGTTTGGTTCGT
TGGAGTTGTAGCTCGTTGTAGCTTGTTGTGGGTCACTGTAGCTCATTGTGGTTAATTGTAGCTCA
CTGTAACTCTTCTGGTTTACTGTGATTGTGTACTGTGGTGTGGTGACACAACCGTGTCTGTTTAC
AGTAGACGTGACGCGTGGGGTGATCGGGTCAGGTGCTCACACGAC
Right flanking sequence: Indices 109986 -- 110485
TCTACAACCCCCTTGACCCGTCCCGTCCCCCCACCCGGCCCAATGCCACCGTCCACACCTCTTCC
TCCATTTTTCACTCCTGCACACTCCCGCGTGTTTATCTGTCGTTGCCCAGACCGTCGCTTCCCAT
GCCATTATACAAGGAAGAAAACTACCTCGTGATCCACCCGGGGTCCGAGTGGACGCTCTTTTCCT
ACGGGATCCAGGACCAGCTCGCGCCGCCGCAGTACAAGGTGCCGCTGCGCGTTTACGCGCGCGCA
CTGGCCGACAAGACCGAGTACCGTCCGGTGGCCACCGACGGGTTCCACGAGGTGGCTCCCATCGT
CAAGGGCCGGTTGGTGGAGGTGGACGCGTTCAACTACCTCCTCAAGGTGATTTTGCAGCTGGTGA
TTGCCAACCACCCCGCCGTCACCATCAGTTCCATCCCGTTGCTCATGGTGGTGCCGGCGTTACTG
TGGACGCGGGCGCTGGTGGAGTACGTGACCAAGTACGTGGTGGAG
Found at i:112391 original size:130 final size:130
Alignment explanation
Indices: 112158--112417 Score: 520
Period size: 130 Copynumber: 2.0 Consensus size: 130
112148 GCGTACTTGT
112158 TCTGGTAAACGTTGGAGTGGACCACGGTGAGCGTCTCCAAAAACGCCTGGAGAGAAGGCGAAAGA
1 TCTGGTAAACGTTGGAGTGGACCACGGTGAGCGTCTCCAAAAACGCCTGGAGAGAAGGCGAAAGA
112223 CGACGGTAGGCCTCTCTCAAGTCGATAAATACCGTGTCCCCGCCCGAAGGTGGCGCCTCCAACGC
66 CGACGGTAGGCCTCTCTCAAGTCGATAAATACCGTGTCCCCGCCCGAAGGTGGCGCCTCCAACGC
112288 TCTGGTAAACGTTGGAGTGGACCACGGTGAGCGTCTCCAAAAACGCCTGGAGAGAAGGCGAAAGA
1 TCTGGTAAACGTTGGAGTGGACCACGGTGAGCGTCTCCAAAAACGCCTGGAGAGAAGGCGAAAGA
112353 CGACGGTAGGCCTCTCTCAAGTCGATAAATACCGTGTCCCCGCCCGAAGGTGGCGCCTCCAACGC
66 CGACGGTAGGCCTCTCTCAAGTCGATAAATACCGTGTCCCCGCCCGAAGGTGGCGCCTCCAACGC
112418 CACAAAGAAC
Statistics
Matches: 130, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
130 130 1.00
ACGTcount: A:0.25, C:0.28, G:0.30, T:0.16
Consensus pattern (130 bp):
TCTGGTAAACGTTGGAGTGGACCACGGTGAGCGTCTCCAAAAACGCCTGGAGAGAAGGCGAAAGA
CGACGGTAGGCCTCTCTCAAGTCGATAAATACCGTGTCCCCGCCCGAAGGTGGCGCCTCCAACGC
Left flanking sequence: Indices 111658 -- 112157
TAAAGAAATGGTCTAGTTCACTTCTAGGTTCTCCAACTGCTGGCGGGCTTCCTCGTAGGTCTGCG
CTGTGCCGTTCTCCTGCTGTAAAGCAGCGTTCTCTTCGGGGGAGTTGCCGTCGCCATCCCCGATC
ACGTCGTTGTAGGGTCGCTCTCCCAACACCGTGATCCGGTAGTGGTGCCGGTGGCCCGTGGCCTG
GCGCAAAAAGTCTAGGGTAGCAGTGTGGACAAGGAACCGGTTGTCCCAGGCAATCACCGCCTTCA
GGTCGGTGCCCTGGTGCAGAGCTCTCACCTGGAACTCGGGGTTGTTCAAGGCGTGGTCAACCAAA
AAGTTGAGGATGAAGTCCAGCTCCTCACGCTTCACCCCGTCAATTCGCTGGATGAATTCTTGGGA
AAAGTACAACGACTTTTCTCCGGTCACTGGGTGGACCCTGACCAACGGATGCTTTGTGTACAAGT
CGCCCGACACCCGTTTGGGCTGGCCGCGGAGCTCGGCGTACTTGT
Right flanking sequence: Indices 112418 -- 112917
CACAAAGAACGAGAACGACGCGGGATACTTCTCGAAACTGACGTCGGAGTGCCAACTGATCCCCT
TAGTAGTGTCCTTAAAGGTCTCCGTGTAGCGACTGTCATCTGAGCTGCTGTTGCGGAAGGTTGTG
AACAACTCGGGGTAGTCCTCTGCGGAATAGCTCACGGGGTGGACGTGCAACGGCCCGTAGTACTC
ACCGAACTCTTTTGCAAACTGGGGACCCTGGTCGCGGAAATCCTGATTGCGGAACACCACTAACC
CACGGGTCTCCAAGTAGAGGGCAAGGTCGTCCTTGGCGGGTCCGGTGAGCTGGCTCAACTGGAAC
AGGCGATCTACAATCTCGGTTCCAAGGTCAGGCAGCAAGTCGAACTTTTCGTAGGCACTCTCGCC
CTTAGGGAACAAGTTGGCGAAGTCCTTGGAGGCGAAGTGGCCACGATCGTTAGCATAGTGCTTGG
GGTTGGTGAATTGGCGGTACTTGCCCACCTCCGCCGGCTTCGTAG
Found at i:114892 original size:11 final size:11
Alignment explanation
Indices: 114869--114958 Score: 80
Period size: 11 Copynumber: 8.5 Consensus size: 11
114859 TCCACCAGCT
114869 CACTAGATTCTC
1 CACTAG-TTCTC
*
114881 CATTAGTTCTC
1 CACTAGTTCTC
114892 CACTAGTTCTC
1 CACTAGTTCTC
* *
114903 CACTGGCTCTC
1 CACTAGTTCTC
*
114914 CA-GA-TTCTC
1 CACTAGTTCTC
*
114923 CACTAGCTCTC
1 CACTAGTTCTC
*
114934 CA-GA-TTCTC
1 CACTAGTTCTC
*
114943 CACTAGCTCTC
1 CACTAGTTCTC
114954 CACTA
1 CACTA
114959 CCTTCTCGTC
Statistics
Matches: 61, Mismatches: 13, Indels: 9
0.73 0.16 0.11
Matches are distributed among these distances:
9 12 0.20
10 3 0.05
11 41 0.67
12 5 0.08
ACGTcount: A:0.20, C:0.38, G:0.10, T:0.32
Consensus pattern (11 bp):
CACTAGTTCTC
Left flanking sequence: Indices 114369 -- 114868
GTACGACTACCAGCGCCAGGGCATCATCAACTACCAGCAGGTGTTGACGGTGATCAAGGCGGTGT
ACAAGATGGTGGGCCCGATGGTGGAGTTGCCCAAGGACGAGGCCACCCCCGAGGCCCGCGCGGAG
AAGTTCTTTGTGCTCTTGAAGAAGAACCCGGAGTCGGACTCCATCAACTTGGACGAGTTCCGCAA
GTTGGCCAAGGTCGACCCCACCGTGCTCAAGGCGTTGAGCGCGTACGAAGGCTGGATTTAATGCA
TTTATGATAGCAACGATACACCCGCTAGTCGGTAATAGTACATTAACATACACATATGATGAATG
GCTGGCCACGGGCCAGGTCCACGGTAGGATACTCAAACGTACCAAGATGAGCGCCAGTCCACTGG
CGTATCTTGTCATGCGATCTCTGTGATCGTTCTTCGATCACCACTATTCTCTGCTCTTTTTCATT
AGCATTCCACTGATTTTCCACCAGCTCACTGGGTTTCCACCAGCT
Right flanking sequence: Indices 114959 -- 115458
CCTTCTCGTCTGGCTTTGTGGCCCTGGGTAGCTTTATTGCTGTCCTTCCACTGCCTCAAGCAACC
CGTCCAAGAGGTCGTCCACCTCCGAGATCGCCACCCCGGTACATATGCTCACCACCTTCTTGAAC
TTCAGCGTCAACTCCAGGTAGTCCATCAACAGCTGGAGCTCGGCGTCCATGCGCGCATTCACCTG
TTTGTACGCGGCAATGCGGGCCTTGAGGATCGGGGTGGGCTGCAACGACAACAGCCCGGGCGAAA
TGTCGTCTACGGGCTCGCCCTTGACGAGCCGCAGGTGCAACTCGGGAATGATGTACGGGTCGTCC
ACCGACCCCTCGAGCTCGGGCAAGTCCTTGGCGTCCAGGTCCAAGAGCTGGAGCTTGTCGGTGAG
GTTGGCCATCTGCAACTTGAGGTTGTCGAGCTCGGCCAACCGGTCGCACAACAGCTTGAGCATGA
ACCGGTTGTTGGCGGTGACGATGGTGGCGTCGTGGAGCAGTTGGT
Found at i:114923 original size:20 final size:20
Alignment explanation
Indices: 114859--114955 Score: 113
Period size: 20 Copynumber: 4.8 Consensus size: 20
114849 TCACTGGGTT
* * *
114859 TCCACCAGCTCACTAGATTC
1 TCCACTAGCTCTCCAGATTC
* * *
114879 TCCATTAGTTCTCCACTAGTTC
1 TCCACTAGCTCTCCA-GA-TTC
*
114901 TCCACTGGCTCTCCAGATTC
1 TCCACTAGCTCTCCAGATTC
114921 TCCACTAGCTCTCCAGATTC
1 TCCACTAGCTCTCCAGATTC
114941 TCCACTAGCTCTCCA
1 TCCACTAGCTCTCCA
114956 CTACCTTCTC
Statistics
Matches: 64, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
20 47 0.73
21 2 0.03
22 15 0.23
ACGTcount: A:0.20, C:0.39, G:0.10, T:0.31
Consensus pattern (20 bp):
TCCACTAGCTCTCCAGATTC
Left flanking sequence: Indices 114359 -- 114858
CGTTCAAGATGTACGACTACCAGCGCCAGGGCATCATCAACTACCAGCAGGTGTTGACGGTGATC
AAGGCGGTGTACAAGATGGTGGGCCCGATGGTGGAGTTGCCCAAGGACGAGGCCACCCCCGAGGC
CCGCGCGGAGAAGTTCTTTGTGCTCTTGAAGAAGAACCCGGAGTCGGACTCCATCAACTTGGACG
AGTTCCGCAAGTTGGCCAAGGTCGACCCCACCGTGCTCAAGGCGTTGAGCGCGTACGAAGGCTGG
ATTTAATGCATTTATGATAGCAACGATACACCCGCTAGTCGGTAATAGTACATTAACATACACAT
ATGATGAATGGCTGGCCACGGGCCAGGTCCACGGTAGGATACTCAAACGTACCAAGATGAGCGCC
AGTCCACTGGCGTATCTTGTCATGCGATCTCTGTGATCGTTCTTCGATCACCACTATTCTCTGCT
CTTTTTCATTAGCATTCCACTGATTTTCCACCAGCTCACTGGGTT
Right flanking sequence: Indices 114956 -- 115455
CTACCTTCTCGTCTGGCTTTGTGGCCCTGGGTAGCTTTATTGCTGTCCTTCCACTGCCTCAAGCA
ACCCGTCCAAGAGGTCGTCCACCTCCGAGATCGCCACCCCGGTACATATGCTCACCACCTTCTTG
AACTTCAGCGTCAACTCCAGGTAGTCCATCAACAGCTGGAGCTCGGCGTCCATGCGCGCATTCAC
CTGTTTGTACGCGGCAATGCGGGCCTTGAGGATCGGGGTGGGCTGCAACGACAACAGCCCGGGCG
AAATGTCGTCTACGGGCTCGCCCTTGACGAGCCGCAGGTGCAACTCGGGAATGATGTACGGGTCG
TCCACCGACCCCTCGAGCTCGGGCAAGTCCTTGGCGTCCAGGTCCAAGAGCTGGAGCTTGTCGGT
GAGGTTGGCCATCTGCAACTTGAGGTTGTCGAGCTCGGCCAACCGGTCGCACAACAGCTTGAGCA
TGAACCGGTTGTTGGCGGTGACGATGGTGGCGTCGTGGAGCAGTT
Found at i:120542 original size:26 final size:28
Alignment explanation
Indices: 120496--120611 Score: 186
Period size: 26 Copynumber: 4.2 Consensus size: 28
120486 ACAAACAACA
*
120496 ACACCAACACCACCAACACCAACACCAAC
1 ACACCAACACCAAC-ACACCAACACCAAC
120525 ACACCAACACC-A-ACACCAACACCAAC
1 ACACCAACACCAACACACCAACACCAAC
120551 ACACCAACACCAACACACCAACACC-A-
1 ACACCAACACCAACACACCAACACCAAC
120577 ACACCAACACCAACACACCAACACCAAC
1 ACACCAACACCAACACACCAACACCAAC
120605 ACACCAA
1 ACACCAA
120612 TAAAAGGGGG
Statistics
Matches: 82, Mismatches: 1, Indels: 9
0.89 0.01 0.10
Matches are distributed among these distances:
26 50 0.61
27 3 0.04
28 18 0.22
29 11 0.13
ACGTcount: A:0.50, C:0.50, G:0.00, T:0.00
Consensus pattern (28 bp):
ACACCAACACCAACACACCAACACCAAC
Left flanking sequence: Indices 119996 -- 120495
CTAACAAATTTCAGAAGTCTGCATGTAAAAACGGCCCCCTCTAACAAACGACCATCCCCCTATAC
GACGAGCTATACGACAAAGACTTTACGAGCATTACATAACACGTTATGTTAGCCGCTTTACGAGC
TATATGGCCTAATGCGGCTTACACGTCGTGTGATCTGGGTCACGTGACTTTACCGTTGATACCGT
AGATAGCGTTGATTATAGGGAACCTGTATATATCCTATATATTACAAGAAGCCCCCAGTACGGCT
TCAGGGTAGCCCGCTCATGCAGGCTACTCCGAAGGCGCACCCAGTGCTTAACTAAACAATTATAG
AAACCCGGATTGGATACCAATGGCACAACCAACAGGGGGAAAAAACGGCGCCAATGGCACCCGAT
CCAACGAATCGAATCGGATACCACTGACACCACCAACAGGGGGAAAAGGAGCCATTGGCATCCAA
CCCTTAAAACAACAGCAACAGCAACAGCAACAGCAACAAACAACA
Right flanking sequence: Indices 120612 -- 121111
TAAAAGGGGGTGGTACCGCTAGTACTTCTGATATCGTCTCCCATATGGCAAAGGAAGCGAAGCCC
AGAGGCTTGCAACTCCCCGCGCCGACCACGGGATGGTTCTGTGGCGATACCGCCCATCCTGACGC
TAGATTGCACCTCCCACCTCCCGGCCCGTCGGCCATCGAGTAGAAGCATGCAACTGCACATGTCA
GGACTGTTCGAGGACCCGTAGCTGGTAGGTGGCCAACCTACCAGTAACAAACCCTGTCACCAGAC
CAACAGACGCTGAGCCACCACCATGGCGCGAAGCGCCAACGGATAATGACCCTGCCGAGAAATTC
CATCAGAAGTACCAGCAGCACCGAGGCTGTGGTGAGCAAGTATCACCACGCTAACGACAAGCTTT
GATTGTAGCCTCCTTGGGGGGATTTTTTTCCCCCATCTTCTTTGATTTTCTTTTTGCTTGTCGCT
GCCTTCCGTAGTAACGGGATTGGAGCCGGGCTTGCGGGGTGCAAG
Found at i:120564 original size:40 final size:40
Alignment explanation
Indices: 120489--120611 Score: 219
Period size: 40 Copynumber: 3.0 Consensus size: 40
120479 AACAGCAACA
* *
120489 AACAACAACACCAACACCACCAACACCAACACCAACACACC
1 AACACCAACACCAACACCAAC-ACACCAACACCAACACACC
120530 AACACCAACACCAACACCAACACACCAACACCAACACACC
1 AACACCAACACCAACACCAACACACCAACACCAACACACC
120570 AACACCAACACCAACACCAACACACCAACACCAACACACC
1 AACACCAACACCAACACCAACACACCAACACCAACACACC
120610 AA
1 AA
120612 TAAAAGGGGG
Statistics
Matches: 80, Mismatches: 2, Indels: 1
0.96 0.02 0.01
Matches are distributed among these distances:
40 61 0.76
41 19 0.24
ACGTcount: A:0.51, C:0.49, G:0.00, T:0.00
Consensus pattern (40 bp):
AACACCAACACCAACACCAACACACCAACACCAACACACC
Left flanking sequence: Indices 119989 -- 120488
GCCCCCTCTAACAAATTTCAGAAGTCTGCATGTAAAAACGGCCCCCTCTAACAAACGACCATCCC
CCTATACGACGAGCTATACGACAAAGACTTTACGAGCATTACATAACACGTTATGTTAGCCGCTT
TACGAGCTATATGGCCTAATGCGGCTTACACGTCGTGTGATCTGGGTCACGTGACTTTACCGTTG
ATACCGTAGATAGCGTTGATTATAGGGAACCTGTATATATCCTATATATTACAAGAAGCCCCCAG
TACGGCTTCAGGGTAGCCCGCTCATGCAGGCTACTCCGAAGGCGCACCCAGTGCTTAACTAAACA
ATTATAGAAACCCGGATTGGATACCAATGGCACAACCAACAGGGGGAAAAAACGGCGCCAATGGC
ACCCGATCCAACGAATCGAATCGGATACCACTGACACCACCAACAGGGGGAAAAGGAGCCATTGG
CATCCAACCCTTAAAACAACAGCAACAGCAACAGCAACAGCAACA
Right flanking sequence: Indices 120612 -- 121111
TAAAAGGGGGTGGTACCGCTAGTACTTCTGATATCGTCTCCCATATGGCAAAGGAAGCGAAGCCC
AGAGGCTTGCAACTCCCCGCGCCGACCACGGGATGGTTCTGTGGCGATACCGCCCATCCTGACGC
TAGATTGCACCTCCCACCTCCCGGCCCGTCGGCCATCGAGTAGAAGCATGCAACTGCACATGTCA
GGACTGTTCGAGGACCCGTAGCTGGTAGGTGGCCAACCTACCAGTAACAAACCCTGTCACCAGAC
CAACAGACGCTGAGCCACCACCATGGCGCGAAGCGCCAACGGATAATGACCCTGCCGAGAAATTC
CATCAGAAGTACCAGCAGCACCGAGGCTGTGGTGAGCAAGTATCACCACGCTAACGACAAGCTTT
GATTGTAGCCTCCTTGGGGGGATTTTTTTCCCCCATCTTCTTTGATTTTCTTTTTGCTTGTCGCT
GCCTTCCGTAGTAACGGGATTGGAGCCGGGCTTGCGGGGTGCAAG
Found at i:120606 original size:6 final size:6
Alignment explanation
Indices: 120460--120606 Score: 142
Period size: 6 Copynumber: 24.0 Consensus size: 6
120450 ACCCTTAAAA
* * * * *
120460 CAACAG CAACAG CAACAG CAACAG CAACA- -AACAA CAACAC CAACA-
1 CAACAC CAACAC CAACAC CAACAC CAACAC CAACAC CAACAC CAACAC
120505 C--CAC CAACAC CAACAC CAACACAC CAACAC CAACAC CAACAC CAACACAC
1 CAACAC CAACAC CAACAC C-A-ACAC CAACAC CAACAC CAACAC C-A-ACAC
120555 CAACAC CAACACAC CAACAC CAACAC CAACAC CAACACAC CAACAC CAACAC
1 CAACAC C-A-ACAC CAACAC CAACAC CAACAC C-A-ACAC CAACAC CAACAC
120607 ACCAATAAAA
Statistics
Matches: 127, Mismatches: 1, Indels: 26
0.82 0.01 0.17
Matches are distributed among these distances:
3 2 0.02
4 5 0.04
5 1 0.01
6 91 0.72
7 8 0.06
8 20 0.16
ACGTcount: A:0.51, C:0.46, G:0.03, T:0.00
Consensus pattern (6 bp):
CAACAC
Left flanking sequence: Indices 119960 -- 120459
TACGATCACGTGACCTACTATGGAAACCGGCCCCCTCTAACAAATTTCAGAAGTCTGCATGTAAA
AACGGCCCCCTCTAACAAACGACCATCCCCCTATACGACGAGCTATACGACAAAGACTTTACGAG
CATTACATAACACGTTATGTTAGCCGCTTTACGAGCTATATGGCCTAATGCGGCTTACACGTCGT
GTGATCTGGGTCACGTGACTTTACCGTTGATACCGTAGATAGCGTTGATTATAGGGAACCTGTAT
ATATCCTATATATTACAAGAAGCCCCCAGTACGGCTTCAGGGTAGCCCGCTCATGCAGGCTACTC
CGAAGGCGCACCCAGTGCTTAACTAAACAATTATAGAAACCCGGATTGGATACCAATGGCACAAC
CAACAGGGGGAAAAAACGGCGCCAATGGCACCCGATCCAACGAATCGAATCGGATACCACTGACA
CCACCAACAGGGGGAAAAGGAGCCATTGGCATCCAACCCTTAAAA
Right flanking sequence: Indices 120607 -- 121106
ACCAATAAAAGGGGGTGGTACCGCTAGTACTTCTGATATCGTCTCCCATATGGCAAAGGAAGCGA
AGCCCAGAGGCTTGCAACTCCCCGCGCCGACCACGGGATGGTTCTGTGGCGATACCGCCCATCCT
GACGCTAGATTGCACCTCCCACCTCCCGGCCCGTCGGCCATCGAGTAGAAGCATGCAACTGCACA
TGTCAGGACTGTTCGAGGACCCGTAGCTGGTAGGTGGCCAACCTACCAGTAACAAACCCTGTCAC
CAGACCAACAGACGCTGAGCCACCACCATGGCGCGAAGCGCCAACGGATAATGACCCTGCCGAGA
AATTCCATCAGAAGTACCAGCAGCACCGAGGCTGTGGTGAGCAAGTATCACCACGCTAACGACAA
GCTTTGATTGTAGCCTCCTTGGGGGGATTTTTTTCCCCCATCTTCTTTGATTTTCTTTTTGCTTG
TCGCTGCCTTCCGTAGTAACGGGATTGGAGCCGGGCTTGCGGGGT
Found at i:163831 original size:59 final size:59
Alignment explanation
Indices: 163726--163858 Score: 196
Period size: 59 Copynumber: 2.3 Consensus size: 59
163716 ATGCAAATAC
* *
163726 AGTCAGA-GAATTGAATTGTGAGTAGAGGATTACTAGGCAATCGAGTGTTTAATTCGACA
1 AGTCAGATG-ATTGAATTGTGAGTAGAGGATAACTAGACAATCGAGTGTTTAATTCGACA
* * *
163785 AGTCAGATGATTGAATTGTGAGTAGAGGATAACTCGACAATTGAGTGTTTAGTTCGACA
1 AGTCAGATGATTGAATTGTGAGTAGAGGATAACTAGACAATCGAGTGTTTAATTCGACA
*
163844 ATTCAGATGATTGAA
1 AGTCAGATGATTGAA
163859 GAGGGAGTCT
Statistics
Matches: 67, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
59 66 0.99
60 1 0.01
ACGTcount: A:0.34, C:0.10, G:0.26, T:0.30
Consensus pattern (59 bp):
AGTCAGATGATTGAATTGTGAGTAGAGGATAACTAGACAATCGAGTGTTTAATTCGACA
Left flanking sequence: Indices 163226 -- 163725
ATGGTAGCAACTCGATGAAGTTTCTCACTATTTTGACGGCAATTGCCGCTGTTGTTGCCGAGGTG
ACTGACCTCGAGATTGACATCACCAAGAAGGTGCCTGCTGCCGCGTGCAAGCGTAAGGCCAAGGA
CGGTGACACCGTTTCCGTGCACTACGCGGGCCGTCTTGAGGACGGCACCCAATTTGATGCGTCGT
ACGACCGGGGCCAGCCTATTTCCTTCGTGTTGGGTGAGGGGAGAGTCATTCAGGGGTGGGAACAG
GGTATCCAGGGCATGTGTGTTGGTGAGAAGCGCAAGTTGACCATCCCTCCCCACTTGGGCTACGG
TTCTGGCGGTGTTGGCCCCATTCCTCCGAACTCCGTGCTCATTTTTGACACCGAGTTGGTGGACA
TTGCTGGTGGCTACGATGACGAGGAAGAGGAGGAGGAGCAGAACTTGCAGGCCGAGGACATGTTG
GAGGCCAACGCCGAGTTCAAGGACGAATTGTAAATATGCAAATAC
Right flanking sequence: Indices 163859 -- 164358
GAGGGAGTCTTTTGCTACAAGTCTCACGTACTGCTACACGTTGTAAATATTGGATATTGTATTAA
GTCTCTGATTAAATGTGAAATGAAAATGCAAATAAGGAGAGGCGAACTCCGGAAGGTAGGCAATG
CCATTAGTGCTTGTCCATCTCGGGGGAGTAGGCGTACTTGGAGAACGCTCTAATTCTCGCACCGT
AGAAGTAGAAAGCGTAGGGAATGAGGCAGCAAGCCAAGGCAATGAACGCCATCATCGTGGAAGCC
CACTGGTTACCCATCTTGTGGTACATCTGGATGGTGAACAAGGGGACACACGCACCCCAAATCGA
CCGCACGAACGTCTTGGCAGCCAAGGCAGATGCGGCGTAATGCTGGTAAGAGTCAACAATGTAGT
TGTTGGCGGGGTTGTACAACGAGGTGAACCCGAAGCCACAGGCAAGACCCGAGAAACAAGGACCG
GCCCACGAGATGTGAGGGTAAGAAGACCAGGCGAAGGGGAACAAA
Found at i:164373 original size:14 final size:15
Alignment explanation
Indices: 164349--164377 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
164339 ACCAGGCGAA
164349 GGGGAACAAACCAGC
1 GGGGAACAAACCAGC
164364 GGGG-ACAAACCAGC
1 GGGGAACAAACCAGC
164378 AGGCAATCAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.38, C:0.28, G:0.34, T:0.00
Consensus pattern (15 bp):
GGGGAACAAACCAGC
Left flanking sequence: Indices 163849 -- 164348
GATGATTGAAGAGGGAGTCTTTTGCTACAAGTCTCACGTACTGCTACACGTTGTAAATATTGGAT
ATTGTATTAAGTCTCTGATTAAATGTGAAATGAAAATGCAAATAAGGAGAGGCGAACTCCGGAAG
GTAGGCAATGCCATTAGTGCTTGTCCATCTCGGGGGAGTAGGCGTACTTGGAGAACGCTCTAATT
CTCGCACCGTAGAAGTAGAAAGCGTAGGGAATGAGGCAGCAAGCCAAGGCAATGAACGCCATCAT
CGTGGAAGCCCACTGGTTACCCATCTTGTGGTACATCTGGATGGTGAACAAGGGGACACACGCAC
CCCAAATCGACCGCACGAACGTCTTGGCAGCCAAGGCAGATGCGGCGTAATGCTGGTAAGAGTCA
ACAATGTAGTTGTTGGCGGGGTTGTACAACGAGGTGAACCCGAAGCCACAGGCAAGACCCGAGAA
ACAAGGACCGGCCCACGAGATGTGAGGGTAAGAAGACCAGGCGAA
Right flanking sequence: Indices 164378 -- 164877
AGGCAATCATCATGGGGATCAAACGCAACTCGGGCGGGGGCATCTCACCCCGGTCACGGTAGACC
TGGGCACGCTTGTTGTAGTCCGTGTTGAACCAGGGCGCAACAACCGACGACAAGATCACACCGAC
ACCAATGGGGATAAACATCACACCGGTCATCGAGGCGTTAAAGCCCTTGTCCTCCTGGTAGATGA
CAGGGTAGGCAAAGAAGAACATGTACAACAAACCGTAGACAACGGACATGTAGATGGTGATCAAG
AACACAATGAGCTCAGACAACAACGCAAACGGACGCAACAAAGAGTGCTTAGCTGTCTCCTTAAA
AGACATAGGCTTCAACTCAGCGAAGGTACGGTAGCGGGCATCGCCAGTCTTCTTTCTAAGACGAG
AAGCACGTCTCTTCAAGATGGTACCGGCGTGGGTCTCAGGCATCAAGGGCACCACAAGGGCGTAG
GTGAAACCAGCGACAATCAAAAAGGTCCAGTAAACCCATCTCCAG
Found at i:170064 original size:9 final size:9
Alignment explanation
Indices: 170052--170081 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
170042 CAAAGCCGCC
170052 GCCGCCCAT
1 GCCGCCCAT
170061 GCCGCCCAT
1 GCCGCCCAT
*
170070 GCCACCCAT
1 GCCGCCCAT
170079 GCC
1 GCC
170082 ACTGCCCATA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.13, C:0.57, G:0.20, T:0.10
Consensus pattern (9 bp):
GCCGCCCAT
Left flanking sequence: Indices 169552 -- 170051
TTGTAGTTTATGATCAAGTCACCCTTGCCGCCGGGCGCTTTCAGAATCGGCATACCCTGGTCAGG
GTACCGCAACTTTGTGTTGGGCTGCACGGGGATGCTGCGCAGGATGGGGATCTTGCGCCCATCGA
TAGTGTTCACCTCCTTCGAGAACCCGAGAAGCGACTCCTTGAACGTCAATGGCAAGTTCATCACC
AAGTCGTTCTCTTCGCGCTTGAACACGGGGTCGGGCTTCTCCTCCAACACAAACTGGATAGTCTG
GCGCGCCTGGCACTCCGACTGCCAGTCACCCTCGTTCTTGAAGGTGATCTTGGTGCCGGCCTTCC
AGCCGGGCTTGATCTTGATCTCGATGATCTTGGGCTCGCGGTTGCCACTGGCGTCCTTGCGCAGA
AGCTTCAACTTCTTGGTGGCGCCCTCGTAGATCTCCTTGAGGGTGGCCTTGAGGGGAAGAGTCAC
GGTGTCCGGCTCAGGACGACGGGCCGAGCGACCGCCAAAGCCGCC
Right flanking sequence: Indices 170082 -- 170581
ACTGCCCATACCGCCAAAGGAGTGGCCACCGCCAAATCCGTAGTCGTCACCACCTCCCATACCAA
AACCACCCATCTGGGAGAAAATGTTGAAGGCATCTGCCTGGGAGAACCCGCCCCCACCACCGCCG
GTGCTAAAGTGGAACTGGGGACCGCCGGCGCCACCGGCACCAGCGAACGGGTTGCCACCCTCGGG
CCCCAGCGGCGCGTTGCCCCGAGCAGCCTCCAACCCATAGTCGTCGTAAATCTGGCGCTTGTCCA
GGTTCAGCAAAATGTCAAACGCCTCGGAAATCTCTTTGAACTTCTCCAGCGCCTTTTCCTGGTCG
TCGGGATGCTTGTCAGGATGCCATTTGAGCGCCATTTTGCGGTACGCCTTCTTGATCTCGGCGTC
GCTGGCCAGCGAGTCGACGCCCAACAAGTCATAAAGCTTGGTGTCTTTAACCATCTTGGCCTTTT
TCTTAGAATAACTGTCTTGACGTGAGCGCTTCACCTTCGATGCAA
Found at i:188015 original size:60 final size:60
Alignment explanation
Indices: 187918--188277 Score: 639
Period size: 60 Copynumber: 6.0 Consensus size: 60
187908 CAGTGTCACG
* * *
187918 CTTCGTCTTGGAAGGCCTCTTCAGCGTAGTGGTCTCAGGGTCACATGGGGTCAGAGTGGT
1 CTTCGTCTTAGAAGGCCTCTTCAGCGTAGTGGGCTCAGGGTCACACGGGGTCAGAGTGGT
*
187978 CTTCGTCTTAGAAGGCCTCTTCAGCGTAGTGGGCTCAGGGTCACATGGGGTCAGAGTGGT
1 CTTCGTCTTAGAAGGCCTCTTCAGCGTAGTGGGCTCAGGGTCACACGGGGTCAGAGTGGT
*
188038 CTTCGTCTTAGAAGGCCTCTTCAGCGTAGTGGGCTCAGGGTCACATGGGGTCAGAGTGGT
1 CTTCGTCTTAGAAGGCCTCTTCAGCGTAGTGGGCTCAGGGTCACACGGGGTCAGAGTGGT
188098 CTTCGTCTTAGAAGGCCTCTTCAGCGTAGTGGGCTCAGGGTCACACGGGGTCAGAGTGGT
1 CTTCGTCTTAGAAGGCCTCTTCAGCGTAGTGGGCTCAGGGTCACACGGGGTCAGAGTGGT
188158 CTTCGTCTTAGAAGGCCTCTTCAGCGTAGTGGGCTCAGGGTCACACGGGGTCAGAGTGGT
1 CTTCGTCTTAGAAGGCCTCTTCAGCGTAGTGGGCTCAGGGTCACACGGGGTCAGAGTGGT
* * * *
188218 CTTCGTCTTAGAAGGCTTCTTCAGGGTGGTGGGCTCAGGGTCACACGGGGTCAGGGTGGT
1 CTTCGTCTTAGAAGGCCTCTTCAGCGTAGTGGGCTCAGGGTCACACGGGGTCAGAGTGGT
188278 TGTTTTAGTC
Statistics
Matches: 293, Mismatches: 7, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
60 293 1.00
ACGTcount: A:0.16, C:0.22, G:0.36, T:0.26
Consensus pattern (60 bp):
CTTCGTCTTAGAAGGCCTCTTCAGCGTAGTGGGCTCAGGGTCACACGGGGTCAGAGTGGT
Left flanking sequence: Indices 187418 -- 187917
CCGTGGTCACCATCAGTTTAGGTGCCATCTCCAGTTGGTTCATGAGAGAGCATACTCTTCACACG
ACTATGAACCGTGATTGATTTGAACCGAAATCATTTATAGAATACCTTCTACAGAATCACATCGA
ATTTGTGGAATTTTTTCCGTTTTCATACTTGCCTCAGTTGTAACCTAAATCCTGTCTCGGCCACA
ACCATGAAGGGAACAGTCATGAAACTCGTGCATGGAGTTGTGACGACTCAAAAAGGTTGAATTAT
GGATTATGACTGATTCTACAAATTGAAGTGGGCTATAGCTAATCTGTGATATTCCATACTGATGT
ATATAATAAAGATAGCTATTTTTGGTTCATAGAGATTGATATGATTGTTTCAATTGAGCATTCAT
ATCATCTTCTACGCAGTCACAATCACGGTGGGAGTAGGAGCTGTCACAGTTTCGGTGACAACACC
TGTGCAAGTCAGACAAGTTTTCGTGGAGGTGGTCTCAGTGTCACG
Right flanking sequence: Indices 188278 -- 188777
TGTTTTAGTCTTGTCCTTAGTGGTCTTAGTCTTAGTTTTCGTCTTAGTTTGGGTGGTCTCAGTAG
TCAAAGTCAGGGGAATGGTCGAAGTAGGCTGGGTCAGTGTGGTGGTGGGCTTAGTCAGCTCGCCT
GGGAACCACCCCCACGTAGAAGTCGTTGTCTTGTAAATAATTGTAATATGGGTCGGAGTATTGAC
CACGGGAGGCGGCTTGATAACGACAGGCGGCTTGACGACAGGCGGCTTGACGACAGGCGGTTGAA
TAACCACAGGCGGCTGAACAACAACAGGTGGCTTATAAACAGGGTAACAATTCAAAAGCCAATTG
TAGAGAAAACCAAAAGTAGCATCAGCCTTTGCTTCGGCCTTTGCCTCTGCGTTTGCTTCAGCAGT
AACGATGCCGGCTGCGGACACGAGAAGAATAGCTTTGGAAAATTGCATCTCAATTGACTAAGGAA
GTTTTTAGGAATATTGTGTATTTATAGGTGATCCTGTTGCAATCT
Found at i:188512 original size:15 final size:15
Alignment explanation
Indices: 188492--188536 Score: 83
Period size: 15 Copynumber: 3.1 Consensus size: 15
188482 CGGCTTGATA
188492 ACGACAGGCGGCTTG
1 ACGACAGGCGGCTTG
188507 ACGACAGGCGGCTTG
1 ACGACAGGCGGCTTG
188522 ACGACAGGCGG-TTG
1 ACGACAGGCGGCTTG
188536 A
1 A
188537 ATAACCACAG
Statistics
Matches: 30, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
14 4 0.13
15 26 0.87
ACGTcount: A:0.22, C:0.24, G:0.40, T:0.13
Consensus pattern (15 bp):
ACGACAGGCGGCTTG
Left flanking sequence: Indices 187992 -- 188491
GCCTCTTCAGCGTAGTGGGCTCAGGGTCACATGGGGTCAGAGTGGTCTTCGTCTTAGAAGGCCTC
TTCAGCGTAGTGGGCTCAGGGTCACATGGGGTCAGAGTGGTCTTCGTCTTAGAAGGCCTCTTCAG
CGTAGTGGGCTCAGGGTCACACGGGGTCAGAGTGGTCTTCGTCTTAGAAGGCCTCTTCAGCGTAG
TGGGCTCAGGGTCACACGGGGTCAGAGTGGTCTTCGTCTTAGAAGGCTTCTTCAGGGTGGTGGGC
TCAGGGTCACACGGGGTCAGGGTGGTTGTTTTAGTCTTGTCCTTAGTGGTCTTAGTCTTAGTTTT
CGTCTTAGTTTGGGTGGTCTCAGTAGTCAAAGTCAGGGGAATGGTCGAAGTAGGCTGGGTCAGTG
TGGTGGTGGGCTTAGTCAGCTCGCCTGGGAACCACCCCCACGTAGAAGTCGTTGTCTTGTAAATA
ATTGTAATATGGGTCGGAGTATTGACCACGGGAGGCGGCTTGATA
Right flanking sequence: Indices 188537 -- 189036
ATAACCACAGGCGGCTGAACAACAACAGGTGGCTTATAAACAGGGTAACAATTCAAAAGCCAATT
GTAGAGAAAACCAAAAGTAGCATCAGCCTTTGCTTCGGCCTTTGCCTCTGCGTTTGCTTCAGCAG
TAACGATGCCGGCTGCGGACACGAGAAGAATAGCTTTGGAAAATTGCATCTCAATTGACTAAGGA
AGTTTTTAGGAATATTGTGTATTTATAGGTGATCCTGTTGCAATCTTCCTAAACAGTTTTAGTTG
ATTTTAGTCGATTAACGGCACGGCTGAGCCTTGACGCTCATCCGACGTTCCAAAGAAGGAAGGTT
GGACTCGTATTGGGAAACCAAGTAGGCACGCTCAACAGCCTCGTAAAAACTTCACCCACGACGTT
GAGCTTTCTGGAACCTTCTATGAAGAGTGTTTGCCCTCGTCATTGAGGACATCGTCAACGATGAC
GAAGCTGATGAATGTGTCATGGATTGAGACCTAAATCGTTTTTGC
Found at i:188548 original size:18 final size:18
Alignment explanation
Indices: 188525--188570 Score: 56
Period size: 18 Copynumber: 2.6 Consensus size: 18
188515 CGGCTTGACG
* * *
188525 ACAGGCGGTTGAATAACC
1 ACAGGCGGCTGAACAACA
188543 ACAGGCGGCTGAACAACA
1 ACAGGCGGCTGAACAACA
*
188561 ACAGGTGGCT
1 ACAGGCGGCT
188571 TATAAACAGG
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.33, C:0.24, G:0.30, T:0.13
Consensus pattern (18 bp):
ACAGGCGGCTGAACAACA
Left flanking sequence: Indices 188025 -- 188524
GGGTCAGAGTGGTCTTCGTCTTAGAAGGCCTCTTCAGCGTAGTGGGCTCAGGGTCACATGGGGTC
AGAGTGGTCTTCGTCTTAGAAGGCCTCTTCAGCGTAGTGGGCTCAGGGTCACACGGGGTCAGAGT
GGTCTTCGTCTTAGAAGGCCTCTTCAGCGTAGTGGGCTCAGGGTCACACGGGGTCAGAGTGGTCT
TCGTCTTAGAAGGCTTCTTCAGGGTGGTGGGCTCAGGGTCACACGGGGTCAGGGTGGTTGTTTTA
GTCTTGTCCTTAGTGGTCTTAGTCTTAGTTTTCGTCTTAGTTTGGGTGGTCTCAGTAGTCAAAGT
CAGGGGAATGGTCGAAGTAGGCTGGGTCAGTGTGGTGGTGGGCTTAGTCAGCTCGCCTGGGAACC
ACCCCCACGTAGAAGTCGTTGTCTTGTAAATAATTGTAATATGGGTCGGAGTATTGACCACGGGA
GGCGGCTTGATAACGACAGGCGGCTTGACGACAGGCGGCTTGACG
Right flanking sequence: Indices 188571 -- 189070
TATAAACAGGGTAACAATTCAAAAGCCAATTGTAGAGAAAACCAAAAGTAGCATCAGCCTTTGCT
TCGGCCTTTGCCTCTGCGTTTGCTTCAGCAGTAACGATGCCGGCTGCGGACACGAGAAGAATAGC
TTTGGAAAATTGCATCTCAATTGACTAAGGAAGTTTTTAGGAATATTGTGTATTTATAGGTGATC
CTGTTGCAATCTTCCTAAACAGTTTTAGTTGATTTTAGTCGATTAACGGCACGGCTGAGCCTTGA
CGCTCATCCGACGTTCCAAAGAAGGAAGGTTGGACTCGTATTGGGAAACCAAGTAGGCACGCTCA
ACAGCCTCGTAAAAACTTCACCCACGACGTTGAGCTTTCTGGAACCTTCTATGAAGAGTGTTTGC
CCTCGTCATTGAGGACATCGTCAACGATGACGAAGCTGATGAATGTGTCATGGATTGAGACCTAA
ATCGTTTTTGCTGACTGTATCGTAAATTGAAAACACAATAAGACA
Found at i:192831 original size:24 final size:24
Alignment explanation
Indices: 192741--192824 Score: 111
Period size: 24 Copynumber: 3.6 Consensus size: 24
192731 GGGGGGTATT
*
192741 AGTAGTTTTTGT-TT-TT-GTCGA
1 AGTAGTTTTCGTCTTCTTGGTCGA
* *
192762 TGTAGTTTTCGTCTTCTTGGTTGA
1 AGTAGTTTTCGTCTTCTTGGTCGA
192786 AGTAGTTTTCGTCTTCTTGGTCGA
1 AGTAGTTTTCGTCTTCTTGGTCGA
*
192810 AGTAGTCTTCGTCTT
1 AGTAGTTTTCGTCTT
192825 AGTGGTCTTC
Statistics
Matches: 54, Mismatches: 6, Indels: 3
0.86 0.10 0.05
Matches are distributed among these distances:
21 10 0.19
22 2 0.04
23 2 0.04
24 40 0.74
ACGTcount: A:0.12, C:0.13, G:0.24, T:0.51
Consensus pattern (24 bp):
AGTAGTTTTCGTCTTCTTGGTCGA
Left flanking sequence: Indices 192241 -- 192740
TTCCGCTTGTGGAAAGCCTGAGGGCGACCGCCAAGAATCTATCCAAGGCGGTGGAGTGCTCCTAT
TGCGTGGGTACTGCCCCTTGCAAGTGCATCAGGCCATCTTCGATTATTTATTGACGAGGTGCAGA
AGCACATTCAATCTCTCCACCAACATTGCTATTTCAAAAACCCCGTTGTTTGTTCTTAATTAACG
AGTAGGTGTTCTTCCTGGATCAGAATCGATCCGGAGTTCGTGTTACAAAAAAGTTTACGAAAAAA
ACTCCATGTTAAGTTGAAGGCTTCGATTGGTCATGTGTTCGTAAGCGTCTTCATAAAATTCCAGA
TTGAAGAGTGAACATCCTCATTACAAATTGCCTACTTTTTAATTTTTCTTCTCCAGGTCATAAAA
TCAACTAAACATTCAATACATTAAAAATACAGAACGGTCACAGTTTCAGTAGGAGTGGGAGCGGT
CACGGTGTAAGTGGTTGTCCCCTCACAAGTGGGTTGGGGGGTATT
Right flanking sequence: Indices 192825 -- 193324
AGTGGTCTTCTCGACTGGGGGCTTACATTTCCAAGGGAAAAGGAAGCAGTAGAGCTGACCGAAAG
TCGGGTCAGCAGTAGCTTCAGCCGCAACAAAACTAGCGCCAGCAACGGCGAGGACAACCTTGAAG
AATTGCATAATCAGTGTCGAAATTTCGAAAGGGAAATCGGAGACTTATAAGTATTTGTGTTTTTC
ATTTATCACTAATTATAGTTGAACAACGGTGCTGATGTGCCTGTTCACTCAGCTAATATTACCAA
AGAGGTAATTCCGGGGTCGGATTTGGAATCCAAATTCCTAAATTAGATTCATTTAGGGGTCTTCA
GAGAGACGCTCGAAAGACAAATGTCCTGAAACCCTTGAGGGTTTCACTAAACTAAGGACTCCAAC
AGAGTTCTGGTGTGCTCAAGCGAAGTTGAATAGCTTAGTTAGCGGGGGATCTTTCCCTCGACCCA
AATCGTTGTCCGGAGATCTCAATTTAAAGAGAAGAATCGAACGAG
Found at i:250582 original size:24 final size:24
Alignment explanation
Indices: 250550--250608 Score: 100
Period size: 24 Copynumber: 2.5 Consensus size: 24
250540 ATCATCGTCT
250550 TCTGCGGGTTCTTCGTGCTGCTTG
1 TCTGCGGGTTCTTCGTGCTGCTTG
*
250574 TCTGGGGGTTCTTCGTGCTGCTTG
1 TCTGCGGGTTCTTCGTGCTGCTTG
*
250598 TATGCGGGTTC
1 TCTGCGGGTTC
250609 CTCCGCAACG
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 32 1.00
ACGTcount: A:0.02, C:0.22, G:0.36, T:0.41
Consensus pattern (24 bp):
TCTGCGGGTTCTTCGTGCTGCTTG
Left flanking sequence: Indices 250050 -- 250549
CCTGAGGGAACAGTTGGAGTGCTGAGCCTATGGCCCGCTCGAGGTCGTCGTCCAGCAGCGACGGT
GCTCGCTGCTCAAACACCAGGGTGAGCGCAGCCAGAATCGCGCTGGAAAGGTCGTCCTCGTCAGA
TTTGCGCTTAGGCACGGCTGCTGATGGCTTCGGGAGGTTGGGGCGGGCCTGAGAGTCTCGCTGGG
GAGAGCGGTATGCAGGCACAGGAGCTGCCTTCGGAGGACTGGGGACGGAGAACTTTTCCTTTTCG
GCGGGCTGTTGGGGGCCCAGAAGCTCGGGGAACGCTTTGAATGCATCGCCAATCGCGCCCATGAG
ATCGTCATCCTCACCCTCGTCGTTTGCGGGCTGAGCTGGCGACTGCGTAAGCTCGCGGAACGCGT
CCTGGATCGCTGCGTCGAGCTCGGGCGATTCCGTGGGCTTTTTGGGTTCGGGCAGCCGCAGGATC
TGGCGGAGAGCGTCGCCAATGGCCCCTGCTAAGTCATCATCGTCT
Right flanking sequence: Indices 250609 -- 251108
CTCCGCAACGGGTGGGGTTGGTTCCTTGGGTTCCTTCTCCTTGGCGGGCTCTGGTGCCTGATGAG
GGGGCAGAGGGAGGTCTTGGAGGTCGCGGAACGCGTCACCAATTGCCCCCTTGAGATCGTCCGAG
TCTGAATGTGCGTCTTTGCTCGCATGCTCCTCGTCCTTTTCGGGTGGGTCGTCCTCTTTGAACTC
TGCACCAAACTGCTTGAACGCATCACCAATGGCTCCCTCTAGGTCGAGGTCCATGTCATCGTCCT
TGTGTGGCTCCTCCTGGTGCTCACTGTGCACATGGGCATCCTCCTCTGGGTGCTCTGGCATATCG
ATATCGATCTCGGGGTGTTTATCGCTCTCAGGCTCCGGCTCAGGCTCTTTCTGCGGAGCAATCTC
GGCAAAGGCGTCGCCGATGGCTGCATCCAAGTCAAACTCCTCATGGTCCTGCTCTTCTTTGTGGT
AGTCGTCCTGGTGGTAGTCCTGTTTCTCGTAGTGGTGCTCGGGCT
Found at i:266109 original size:12 final size:12
Alignment explanation
Indices: 266089--266122 Score: 59
Period size: 12 Copynumber: 2.8 Consensus size: 12
266079 GCGAACTTGA
*
266089 TGGTACAACGGG
1 TGGTGCAACGGG
266101 TGGTGCAACGGG
1 TGGTGCAACGGG
266113 TGGTGCAACG
1 TGGTGCAACG
266123 ATGTTGTTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.21, C:0.18, G:0.44, T:0.18
Consensus pattern (12 bp):
TGGTGCAACGGG
Left flanking sequence: Indices 265589 -- 266088
GTTCAACCGCGACTACTGGGCGTACTTTGAGGACTTTGCCCGTCGTCTTACGCAAAAGTACGACG
ATGTGCGCATCATGACCGGTCCTCTTTACCTTCCCAAGTTGTGTGAGGACGGCAAGTACCGTGTA
ACCTACGAGATGATTGGGTCTCCCCCCAACGTGGCCGTGCCCACCCACTTCTTCAAGTTGGTGGT
GGGCGAGCGTCGTGGCGCCGACTCCGTGGCGGTGGCGGCGTTTGTCATGCCCAACGACGTCATCA
ACAACACCGACCCCTTGACCAAGTTCCAGGTGCCCGTGGAGGCGCTTGAGCGGTCGCTGGGGCTC
GAGTTGTTGCAAAAATTGCCTCCCAACAAGAAGCGTGACTTGTGCCGGGAGGTCAAGTGCGATAT
CATCGTGCGGGAGTTCCCCAAGCAGGCCAACAATCTCATTGGCAAGGCGTAGGCTTATAGAATTA
TAGAATGCATATGAACGGATAATGGTGGTGTAGGTGCGAACTTGA
Right flanking sequence: Indices 266123 -- 266622
ATGTTGTTTTCAAGTGTGGTGTGGTTCCTGTGTCGTAAAGTGTGCGTGGGGTGCCGTTGTTGGCG
TGATTCGAACTTGGGAGTGTCCTCCGGTGGTCCTCCTCCCGGTTCTATTTGACACATTTTTCACG
GATATTACCAAATCCGTGAAAAGTATCAAAGCTAAATGTATTACCCTAAAGTGGTGAACGGCGGG
AAACAAAACCTTCTGCTGCCACGCCTACACCAGCGTTCTTCGAAACCACCACGCCGCAGCCCCTT
CTCCGCCTCTTCCACCCTACTCTCCGAAGAACTCGATGGAAGCTTTGCCAGTCGCGCACGCGGCG
CATAAATACGCACGGTGTATCCTCCACCCCCCAATAGACAATGCCGAATCTGATCGTTTACTTTG
ACCTCACCCGGGCGGGCGAGCCCGAGGGCCGCGTTGTGTTTGAGTTGTTTGACGATGTGGTTCCC
AAAACCGCCGAGAACTTCCGGGCTTTGTGCACCGGCGAAAAGGGA
Found at i:273699 original size:21 final size:21
Alignment explanation
Indices: 273669--274072 Score: 147
Period size: 21 Copynumber: 19.2 Consensus size: 21
273659 TGGTGTCACC
* *
273669 TCGCCTCTGTACTCGCCTACG
1 TCGCCGCTGTACTCGCCGACG
* *
273690 TCGCCGCTGTACTCTCCCACG
1 TCGCCGCTGTACTCGCCGACG
*
273711 TC-CC-CTTCGTACTCGCCTACG
1 TCGCCGC-T-GTACTCGCCGACG
*
273732 TCGCC-CTCGTAC-AGCCCGACG
1 TCGCCGCT-GTACTCG-CCGACG
* *
273753 TCTCCCCTGTACAGTC-CC-ACG
1 TCGCCGCTGTAC--TCGCCGACG
* *
273774 TCTCCTCTGTACTCGCCGACG
1 TCGCCGCTGTACTCGCCGACG
*
273795 TC-CC-CTTCGTACAGTC-CC-ACC
1 TCGCCGC-T-GTAC--TCGCCGACG
*
273816 TCGCCTCTGTACTCGCCGACG
1 TCGCCGCTGTACTCGCCGACG
*
273837 TCGCCGTCT-TAC-AGCCCGACG
1 TCGCCG-CTGTACTCG-CCGACG
* *
273858 TCGCCGCTGTACTCGCCCACT
1 TCGCCGCTGTACTCGCCGACG
*
273879 TCGCCG-TCGTACTCGCCTACG
1 TCGCCGCT-GTACTCGCCGACG
* *
273900 TCGCCG-TCGTACTCCCCCACG
1 TCGCCGCT-GTACTCGCCGACG
*
273921 -CTGCCG-TCGTACTCGCCTACG
1 TC-GCCGCT-GTACTCGCCGACG
*
273942 TCGCC-CAGCTACTCGCCGACG
1 TCGCCGCTG-TACTCGCCGACG
* *
273963 TCGCCTTCT-TAC-AGCCCGACG
1 TCGCC-GCTGTACTCG-CCGACG
* * * *
273984 TCGCCG-TCCTAC-AGCCCCACC
1 TCGCCGCT-GTACTCG-CCGACG
* *
274005 TCTCCTCTGTAC-CTGCCGACG
1 TCGCCGCTGTACTC-GCCGACG
*
274026 -CTGCCGCTGTACTCGCCCACG
1 TC-GCCGCTGTACTCGCCGACG
274047 TCGCCG-TCGTAC-CTGCCGACG
1 TCGCCGCT-GTACTC-GCCGACG
274068 TCGCC
1 TCGCC
274073 TTCCTACAGC
Statistics
Matches: 304, Mismatches: 40, Indels: 78
0.72 0.09 0.18
Matches are distributed among these distances:
19 7 0.02
20 21 0.07
21 252 0.83
22 20 0.07
23 4 0.01
ACGTcount: A:0.11, C:0.47, G:0.20, T:0.22
Consensus pattern (21 bp):
TCGCCGCTGTACTCGCCGACG
Left flanking sequence: Indices 273169 -- 273668
ACGTGATGACCTCGCGCGGCCACTTGATGGCCATCACCCGTCACGGTATCAACCGTGCCGACACT
GGTGCCCTCATGCGTTGTTCGTTCGAGGAAACCGTCGAAATCTTGCTTGACGCCGCTGCCACGGC
CGAGCTCGACGACTGTCGCGGTATCTCCGAGAACGTCATGCTTGGTCAGATGGCGCCTTTGGGTA
CCGGTGCGTTTGACGTCATGGTGGACGACAACATGCTCCAGGAGGCGCCTGGCGTCACTGTCGAG
GGTGAGTACGAGGATGGCGGTGCCACCCCGTACCGCGACTACGACATGGAGGACGACAAGATCCA
GTTCGACGAGGGTGGTGCGTTCTCGCCCATCCACACCGCCCAGGTGGGCGAGTCCGGTGGGTTGA
CTTCGTACGGAGGCATGCCTCAGCTGCCTGGGGCGGCCACGTCGCCGTTCAACTTCCCGACTTCG
CCGTCGTTCCTGGGAGCTACGCTGCCGGGTTACGGTGGTGTCACC
Right flanking sequence: Indices 274073 -- 274572
TTCCTACAGCCCGACGTCGCCTTCGTACCTGCCGACGCTGCCGCAGTACCTGCCCACGTCGCCGC
AGTACAGCCCCACTCTGCCCAGCTACTCGCCTGGGTCGCCGCAGTACACCCCTCCGGAGCCCAAG
AAGGAAGAGGAAAAGTAACCTGTTTGATGATTGTACTATTAAAACCAAAAAAATGCACTAATACT
TCATATAGAAATTCACGAAACATTAATCATTTTGGTGTACAATCAACATAGTAGATCACTTCTTA
CATACCGTGGCGTGGTCAACGAACGCTTCATACGACGGACAGAACTGCTCACAAGCCTTACAAAA
CCCGGGTTTCTCGGCCCCTCCGTTCCTGATTGCATTGTAGTGGACAGTCATGTGTCGTTTTAGGG
TGTAGGGGCGGCTGAACCGTGGCGTGGTACAAATTGGGTTGTTTTCGTGGTAAAACGGGCAAACA
TTGGAGCCCAGAGACTTAGTTTGCTCCACTTGCACATTCTTGGGA
Found at i:273724 original size:42 final size:42
Alignment explanation
Indices: 273677--273964 Score: 211
Period size: 42 Copynumber: 6.9 Consensus size: 42
273667 CCTCGCCTCT
* *
273677 GTACTCGCCTACGTCGCCGCTGTACTCTCCCACGTCCCCTTC
1 GTACTCGCCTACGTCGCCGCTGTACTCGCCCACGTCCCCGTC
* *
273719 GTACTCGCCTACGTCGCC-CTCGTAC-AGCCCGACGTCTCCCCT-
1 GTACTCGCCTACGTCGCCGCT-GTACTCGCCC-ACGTC-CCCGTC
* * * *
273761 GTACAGTC-CC-ACGTCTCCTCTGTACTCGCCGACGTCCCCTTC
1 GTAC--TCGCCTACGTCGCCGCTGTACTCGCCCACGTCCCCGTC
* * * *
273803 GTACAGTC-CC-ACCTCGCCTCTGTACTCGCCGACGTCGCCGTC
1 GTAC--TCGCCTACGTCGCCGCTGTACTCGCCCACGTCCCCGTC
* * * * *
273845 TTAC-AGCCCGACGTCGCCGCTGTACTCGCCCACTTCGCCGTC
1 GTACTCG-CCTACGTCGCCGCTGTACTCGCCCACGTCCCCGTC
* *
273887 GTACTCGCCTACGTCGCCG-TCGTACTCCCCCACG-CTGCCGTC
1 GTACTCGCCTACGTCGCCGCT-GTACTCGCCCACGTC-CCCGTC
* *
273929 GTACTCGCCTACGTCGCC-CAGCTACTCGCCGACGTC
1 GTACTCGCCTACGTCGCCGCTG-TACTCGCCCACGTC
273965 GCCTTCTTAC
Statistics
Matches: 204, Mismatches: 25, Indels: 33
0.78 0.10 0.13
Matches are distributed among these distances:
41 14 0.07
42 175 0.86
43 13 0.06
44 2 0.01
ACGTcount: A:0.11, C:0.46, G:0.20, T:0.23
Consensus pattern (42 bp):
GTACTCGCCTACGTCGCCGCTGTACTCGCCCACGTCCCCGTC
Left flanking sequence: Indices 273177 -- 273676
ACCTCGCGCGGCCACTTGATGGCCATCACCCGTCACGGTATCAACCGTGCCGACACTGGTGCCCT
CATGCGTTGTTCGTTCGAGGAAACCGTCGAAATCTTGCTTGACGCCGCTGCCACGGCCGAGCTCG
ACGACTGTCGCGGTATCTCCGAGAACGTCATGCTTGGTCAGATGGCGCCTTTGGGTACCGGTGCG
TTTGACGTCATGGTGGACGACAACATGCTCCAGGAGGCGCCTGGCGTCACTGTCGAGGGTGAGTA
CGAGGATGGCGGTGCCACCCCGTACCGCGACTACGACATGGAGGACGACAAGATCCAGTTCGACG
AGGGTGGTGCGTTCTCGCCCATCCACACCGCCCAGGTGGGCGAGTCCGGTGGGTTGACTTCGTAC
GGAGGCATGCCTCAGCTGCCTGGGGCGGCCACGTCGCCGTTCAACTTCCCGACTTCGCCGTCGTT
CCTGGGAGCTACGCTGCCGGGTTACGGTGGTGTCACCTCGCCTCT
Right flanking sequence: Indices 273965 -- 274464
GCCTTCTTACAGCCCGACGTCGCCGTCCTACAGCCCCACCTCTCCTCTGTACCTGCCGACGCTGC
CGCTGTACTCGCCCACGTCGCCGTCGTACCTGCCGACGTCGCCTTCCTACAGCCCGACGTCGCCT
TCGTACCTGCCGACGCTGCCGCAGTACCTGCCCACGTCGCCGCAGTACAGCCCCACTCTGCCCAG
CTACTCGCCTGGGTCGCCGCAGTACACCCCTCCGGAGCCCAAGAAGGAAGAGGAAAAGTAACCTG
TTTGATGATTGTACTATTAAAACCAAAAAAATGCACTAATACTTCATATAGAAATTCACGAAACA
TTAATCATTTTGGTGTACAATCAACATAGTAGATCACTTCTTACATACCGTGGCGTGGTCAACGA
ACGCTTCATACGACGGACAGAACTGCTCACAAGCCTTACAAAACCCGGGTTTCTCGGCCCCTCCG
TTCCTGATTGCATTGTAGTGGACAGTCATGTGTCGTTTTAGGGTG
Found at i:273856 original size:63 final size:64
Alignment explanation
Indices: 273789--274058 Score: 194
Period size: 63 Copynumber: 4.3 Consensus size: 64
273779 TCTGTACTCG
*
273789 CCGACGTC-CCCTTCGTACAGTCCCACCTCGCCTCTGTACTCGCCGACGTCGCCGTCTTACAGC
1 CCGACGTCGCCCGTCGTACAGTCCCACCTCGCCTCTGTACTCGCCGACGTCGCCGTCTTACAGC
* * * * *
273852 CCGACGTCG-CCG-CTGTACTCG-CCCACTTCGCCGTC-GTACTCGCCTACGTCGCCGTCGTACT
1 CCGACGTCGCCCGTC-GTAC-AGTCCCACCTCGCC-TCTGTACTCGCCGACGTCGCCGTCTTACA
*
273913 CC
63 GC
* * * *
273915 CCCACG-CTG-CCGTCGTAC--TCGCCTACGTCGCC-CAGCTACTCGCCGACGTCGCCTTCTTAC
1 CCGACGTC-GCCCGTCGTACAGTC-CC-ACCTCGCCTCTG-TACTCGCCGACGTCGCCGTCTTAC
273975 AGC
62 AGC
* * *
273978 CCGACGTCG-CCGTCCTACAGCCCCACCTCTCCTCTGTAC-CTGCCGACG-CTGCCG-CTGTACT
1 CCGACGTCGCCCGTCGTACAGTCCCACCTCGCCTCTGTACTC-GCCGACGTC-GCCGTCT-TAC-
*
274039 CGC
62 AGC
274042 CC-ACGTCG-CCGTCGTAC
1 CCGACGTCGCCCGTCGTAC
274059 CTGCCGACGT
Statistics
Matches: 165, Mismatches: 23, Indels: 38
0.73 0.10 0.17
Matches are distributed among these distances:
61 2 0.01
62 9 0.05
63 140 0.85
64 13 0.08
65 1 0.01
ACGTcount: A:0.11, C:0.47, G:0.21, T:0.21
Consensus pattern (64 bp):
CCGACGTCGCCCGTCGTACAGTCCCACCTCGCCTCTGTACTCGCCGACGTCGCCGTCTTACAGC
Left flanking sequence: Indices 273289 -- 273788
CTGCCACGGCCGAGCTCGACGACTGTCGCGGTATCTCCGAGAACGTCATGCTTGGTCAGATGGCG
CCTTTGGGTACCGGTGCGTTTGACGTCATGGTGGACGACAACATGCTCCAGGAGGCGCCTGGCGT
CACTGTCGAGGGTGAGTACGAGGATGGCGGTGCCACCCCGTACCGCGACTACGACATGGAGGACG
ACAAGATCCAGTTCGACGAGGGTGGTGCGTTCTCGCCCATCCACACCGCCCAGGTGGGCGAGTCC
GGTGGGTTGACTTCGTACGGAGGCATGCCTCAGCTGCCTGGGGCGGCCACGTCGCCGTTCAACTT
CCCGACTTCGCCGTCGTTCCTGGGAGCTACGCTGCCGGGTTACGGTGGTGTCACCTCGCCTCTGT
ACTCGCCTACGTCGCCGCTGTACTCTCCCACGTCCCCTTCGTACTCGCCTACGTCGCCCTCGTAC
AGCCCGACGTCTCCCCTGTACAGTCCCACGTCTCCTCTGTACTCG
Right flanking sequence: Indices 274059 -- 274558
CTGCCGACGTCGCCTTCCTACAGCCCGACGTCGCCTTCGTACCTGCCGACGCTGCCGCAGTACCT
GCCCACGTCGCCGCAGTACAGCCCCACTCTGCCCAGCTACTCGCCTGGGTCGCCGCAGTACACCC
CTCCGGAGCCCAAGAAGGAAGAGGAAAAGTAACCTGTTTGATGATTGTACTATTAAAACCAAAAA
AATGCACTAATACTTCATATAGAAATTCACGAAACATTAATCATTTTGGTGTACAATCAACATAG
TAGATCACTTCTTACATACCGTGGCGTGGTCAACGAACGCTTCATACGACGGACAGAACTGCTCA
CAAGCCTTACAAAACCCGGGTTTCTCGGCCCCTCCGTTCCTGATTGCATTGTAGTGGACAGTCAT
GTGTCGTTTTAGGGTGTAGGGGCGGCTGAACCGTGGCGTGGTACAAATTGGGTTGTTTTCGTGGT
AAAACGGGCAAACATTGGAGCCCAGAGACTTAGTTTGCTCCACTT
Found at i:273988 original size:105 final size:106
Alignment explanation
Indices: 273669--274100 Score: 328
Period size: 105 Copynumber: 4.1 Consensus size: 106
273659 TGGTGTCACC
* *
273669 TCGCCTCTGTACTCGCCTACGTCGCCG-CTGTACTCTCCCACG-TCCCCTTC-GTACTCGCCTAC
1 TCGCCTC-GTACTCGCCTACGTCGCCGTCTGTACTCTCCCACGCTCGCCGTCTGTACTCGCCTAC
* * *
273731 GTCGCCCTCGTACAGCCCGACGTCTCCCCTGTACAGTCCCACG
65 GTCGCCGTCGTACAGCCCGACGTCGCCTCTGTACAG-CCCACG
* * * * ** *
273774 TCTCCTCTGTACTCGCCGACGTCCCCTTC-GTACAGTCCCAC-CTCGCC-TCTGTACTCGCCGAC
1 TCGCCTC-GTACTCGCCTACGTCGCCGTCTGTACTCTCCCACGCTCGCCGTCTGTACTCGCCTAC
* * * *
273836 GTCGCCGTCTTACAGCCCGACGTCGCCGCTGTACTCGCCCACT
65 GTCGCCGTCGTACAGCCCGACGTCGCCTCTGTAC-AGCCCACG
*
273879 TCGCCGTCGTACTCGCCTACGTCGCCGTC-GTACTCCCCCACGCT-GCCGTC-GTACTCGCCTAC
1 TCGCC-TCGTACTCGCCTACGTCGCCGTCTGTACTCTCCCACGCTCGCCGTCTGTACTCGCCTAC
*
273941 GTCGCC--CAGCTAC-TCGCCGACGTCGCCTTCT-TACAGCCCGACG
65 GTCGCCGTC-G-TACAGC-CCGACGTCGCC-TCTGTACAGCCC-ACG
* * * * * * *
273984 TCGCCGTCCTAC-AGCCCCACCTCTCC-TCTGTAC-CTGCCGACGCT-GCCG-CTGTACTCGCCC
1 TCGCC-TCGTACTCG-CCTACGTCGCCGTCTGTACTCT-CCCACGCTCGCCGTCTGTACTCGCCT
* *
274044 ACGTCGCCGTCGTACCTG-CCGACGTCGCCT-TCCTACAGCCCGACG
63 ACGTCGCCGTCGTA-CAGCCCGACGTCGCCTCT-GTACAGCCC-ACG
274089 TCGCCTTCGTAC
1 TCGCC-TCGTAC
274101 CTGCCGACGC
Statistics
Matches: 267, Mismatches: 38, Indels: 44
0.77 0.11 0.13
Matches are distributed among these distances:
103 2 0.01
104 13 0.05
105 239 0.90
106 12 0.04
107 1 0.00
ACGTcount: A:0.11, C:0.46, G:0.20, T:0.22
Consensus pattern (106 bp):
TCGCCTCGTACTCGCCTACGTCGCCGTCTGTACTCTCCCACGCTCGCCGTCTGTACTCGCCTACG
TCGCCGTCGTACAGCCCGACGTCGCCTCTGTACAGCCCACG
Left flanking sequence: Indices 273169 -- 273668
ACGTGATGACCTCGCGCGGCCACTTGATGGCCATCACCCGTCACGGTATCAACCGTGCCGACACT
GGTGCCCTCATGCGTTGTTCGTTCGAGGAAACCGTCGAAATCTTGCTTGACGCCGCTGCCACGGC
CGAGCTCGACGACTGTCGCGGTATCTCCGAGAACGTCATGCTTGGTCAGATGGCGCCTTTGGGTA
CCGGTGCGTTTGACGTCATGGTGGACGACAACATGCTCCAGGAGGCGCCTGGCGTCACTGTCGAG
GGTGAGTACGAGGATGGCGGTGCCACCCCGTACCGCGACTACGACATGGAGGACGACAAGATCCA
GTTCGACGAGGGTGGTGCGTTCTCGCCCATCCACACCGCCCAGGTGGGCGAGTCCGGTGGGTTGA
CTTCGTACGGAGGCATGCCTCAGCTGCCTGGGGCGGCCACGTCGCCGTTCAACTTCCCGACTTCG
CCGTCGTTCCTGGGAGCTACGCTGCCGGGTTACGGTGGTGTCACC
Right flanking sequence: Indices 274101 -- 274600
CTGCCGACGCTGCCGCAGTACCTGCCCACGTCGCCGCAGTACAGCCCCACTCTGCCCAGCTACTC
GCCTGGGTCGCCGCAGTACACCCCTCCGGAGCCCAAGAAGGAAGAGGAAAAGTAACCTGTTTGAT
GATTGTACTATTAAAACCAAAAAAATGCACTAATACTTCATATAGAAATTCACGAAACATTAATC
ATTTTGGTGTACAATCAACATAGTAGATCACTTCTTACATACCGTGGCGTGGTCAACGAACGCTT
CATACGACGGACAGAACTGCTCACAAGCCTTACAAAACCCGGGTTTCTCGGCCCCTCCGTTCCTG
ATTGCATTGTAGTGGACAGTCATGTGTCGTTTTAGGGTGTAGGGGCGGCTGAACCGTGGCGTGGT
ACAAATTGGGTTGTTTTCGTGGTAAAACGGGCAAACATTGGAGCCCAGAGACTTAGTTTGCTCCA
CTTGCACATTCTTGGGATTAGCTTCCCGCTCCAAGTTGGTGGCCC
Found at i:274024 original size:42 final size:42
Alignment explanation
Indices: 273978--274109 Score: 130
Period size: 42 Copynumber: 3.1 Consensus size: 42
273968 TTCTTACAGC
* *
273978 CCGACGTCGCCGTCCTACAGCCCCACCTCTCCTCTGTACCTG
1 CCGACGTCGCCGTCCTACAGCCCCACGTCGCCTCTGTACCTG
* *
274020 CCGACG-CTGCCG-CTGTAC-TCGCCCACGTCGCCGTC-GTACCTG
1 CCGACGTC-GCCGTC-CTACAGC-CCCACGTCGCC-TCTGTACCTG
* *
274062 CCGACGTCGCCTTCCTACAGCCCGACGTCGCCT-TCGTACCTG
1 CCGACGTCGCCGTCCTACAGCCCCACGTCGCCTCT-GTACCTG
274104 CCGACG
1 CCGACG
274110 CTGCCGCAGT
Statistics
Matches: 73, Mismatches: 8, Indels: 18
0.74 0.08 0.18
Matches are distributed among these distances:
41 4 0.05
42 64 0.88
43 5 0.07
ACGTcount: A:0.11, C:0.47, G:0.22, T:0.20
Consensus pattern (42 bp):
CCGACGTCGCCGTCCTACAGCCCCACGTCGCCTCTGTACCTG
Left flanking sequence: Indices 273478 -- 273977
AGGACGACAAGATCCAGTTCGACGAGGGTGGTGCGTTCTCGCCCATCCACACCGCCCAGGTGGGC
GAGTCCGGTGGGTTGACTTCGTACGGAGGCATGCCTCAGCTGCCTGGGGCGGCCACGTCGCCGTT
CAACTTCCCGACTTCGCCGTCGTTCCTGGGAGCTACGCTGCCGGGTTACGGTGGTGTCACCTCGC
CTCTGTACTCGCCTACGTCGCCGCTGTACTCTCCCACGTCCCCTTCGTACTCGCCTACGTCGCCC
TCGTACAGCCCGACGTCTCCCCTGTACAGTCCCACGTCTCCTCTGTACTCGCCGACGTCCCCTTC
GTACAGTCCCACCTCGCCTCTGTACTCGCCGACGTCGCCGTCTTACAGCCCGACGTCGCCGCTGT
ACTCGCCCACTTCGCCGTCGTACTCGCCTACGTCGCCGTCGTACTCCCCCACGCTGCCGTCGTAC
TCGCCTACGTCGCCCAGCTACTCGCCGACGTCGCCTTCTTACAGC
Right flanking sequence: Indices 274110 -- 274609
CTGCCGCAGTACCTGCCCACGTCGCCGCAGTACAGCCCCACTCTGCCCAGCTACTCGCCTGGGTC
GCCGCAGTACACCCCTCCGGAGCCCAAGAAGGAAGAGGAAAAGTAACCTGTTTGATGATTGTACT
ATTAAAACCAAAAAAATGCACTAATACTTCATATAGAAATTCACGAAACATTAATCATTTTGGTG
TACAATCAACATAGTAGATCACTTCTTACATACCGTGGCGTGGTCAACGAACGCTTCATACGACG
GACAGAACTGCTCACAAGCCTTACAAAACCCGGGTTTCTCGGCCCCTCCGTTCCTGATTGCATTG
TAGTGGACAGTCATGTGTCGTTTTAGGGTGTAGGGGCGGCTGAACCGTGGCGTGGTACAAATTGG
GTTGTTTTCGTGGTAAAACGGGCAAACATTGGAGCCCAGAGACTTAGTTTGCTCCACTTGCACAT
TCTTGGGATTAGCTTCCCGCTCCAAGTTGGTGGCCCTCTTTAACT
Found at i:274078 original size:84 final size:82
Alignment explanation
Indices: 273852--274136 Score: 260
Period size: 84 Copynumber: 3.4 Consensus size: 82
273842 GTCTTACAGC
* * * * **
273852 CCGACGTCGCCGCTGTACTCGCCCACTTCGCCGTCGTACTCGCCTACGTCGCCGTCGTACTCCCC
1 CCGACGTCGCCGCAGTACTCGCCCACGTCGCCGTCGTACT-GCCGACGTCGCCGTCCTACAGCCC
*
273917 CACGCTGCCGTC-GTA-CTCG
65 CAC-CT-CCCTCTGTACCT-G
* * * * *
273936 CCTACGTCGCC-CAGCTACTCGCCGACGTCGCCTTCTTACAGCCCGACGTCGCCGTCCTACAGCC
1 CCGACGTCGCCGCAG-TACTCGCCCACGTCGCCGTCGTACTG-CCGACGTCGCCGTCCTACAGCC
274000 CCACCTCTCCTCTGTACCTG
64 CCACCTC-CCTCTGTACCTG
* *
274020 CCGACG-CTGCCGCTGTACTCGCCCACGTCGCCGTCGTACCTGCCGACGTCGCCTTCCTACAGCC
1 CCGACGTC-GCCGCAGTACTCGCCCACGTCGCCGTCGTA-CTGCCGACGTCGCCGTCCTACAGCC
* *
274084 CGACGTCGCCT-TCGTACCTG
64 CCACCTC-CCTCT-GTACCTG
274104 CCGACG-CTGCCGCAGTAC-CTGCCCACGTCGCCG
1 CCGACGTC-GCCGCAGTACTC-GCCCACGTCGCCG
274137 CAGTACAGCC
Statistics
Matches: 168, Mismatches: 23, Indels: 20
0.80 0.11 0.09
Matches are distributed among these distances:
82 1 0.01
83 11 0.07
84 150 0.89
85 6 0.04
ACGTcount: A:0.11, C:0.47, G:0.22, T:0.20
Consensus pattern (82 bp):
CCGACGTCGCCGCAGTACTCGCCCACGTCGCCGTCGTACTGCCGACGTCGCCGTCCTACAGCCCC
ACCTCCCTCTGTACCTG
Left flanking sequence: Indices 273352 -- 273851
CGCCTTTGGGTACCGGTGCGTTTGACGTCATGGTGGACGACAACATGCTCCAGGAGGCGCCTGGC
GTCACTGTCGAGGGTGAGTACGAGGATGGCGGTGCCACCCCGTACCGCGACTACGACATGGAGGA
CGACAAGATCCAGTTCGACGAGGGTGGTGCGTTCTCGCCCATCCACACCGCCCAGGTGGGCGAGT
CCGGTGGGTTGACTTCGTACGGAGGCATGCCTCAGCTGCCTGGGGCGGCCACGTCGCCGTTCAAC
TTCCCGACTTCGCCGTCGTTCCTGGGAGCTACGCTGCCGGGTTACGGTGGTGTCACCTCGCCTCT
GTACTCGCCTACGTCGCCGCTGTACTCTCCCACGTCCCCTTCGTACTCGCCTACGTCGCCCTCGT
ACAGCCCGACGTCTCCCCTGTACAGTCCCACGTCTCCTCTGTACTCGCCGACGTCCCCTTCGTAC
AGTCCCACCTCGCCTCTGTACTCGCCGACGTCGCCGTCTTACAGC
Right flanking sequence: Indices 274137 -- 274636
CAGTACAGCCCCACTCTGCCCAGCTACTCGCCTGGGTCGCCGCAGTACACCCCTCCGGAGCCCAA
GAAGGAAGAGGAAAAGTAACCTGTTTGATGATTGTACTATTAAAACCAAAAAAATGCACTAATAC
TTCATATAGAAATTCACGAAACATTAATCATTTTGGTGTACAATCAACATAGTAGATCACTTCTT
ACATACCGTGGCGTGGTCAACGAACGCTTCATACGACGGACAGAACTGCTCACAAGCCTTACAAA
ACCCGGGTTTCTCGGCCCCTCCGTTCCTGATTGCATTGTAGTGGACAGTCATGTGTCGTTTTAGG
GTGTAGGGGCGGCTGAACCGTGGCGTGGTACAAATTGGGTTGTTTTCGTGGTAAAACGGGCAAAC
ATTGGAGCCCAGAGACTTAGTTTGCTCCACTTGCACATTCTTGGGATTAGCTTCCCGCTCCAAGT
TGGTGGCCCTCTTTAACTTCTTTGTAGGTCGCTCGGGAGCTTTCT
Found at i:274107 original size:21 final size:21
Alignment explanation
Indices: 274044--274135 Score: 91
Period size: 21 Copynumber: 4.4 Consensus size: 21
274034 GTACTCGCCC
*
274044 ACGTCGCCGTCGTACCTGCCG
1 ACGTCGCCTTCGTACCTGCCG
* *
274065 ACGTCGCCTTCCTA-CAGCCCG
1 ACGTCGCCTTCGTACCTG-CCG
274086 ACGTCGCCTTCGTACCTGCCG
1 ACGTCGCCTTCGTACCTGCCG
* *
274107 ACG-CTGCC-GCAGTACCTGCCC
1 ACGTC-GCCTTC-GTACCTGCCG
274128 ACGTCGCC
1 ACGTCGCC
274136 GCAGTACAGC
Statistics
Matches: 59, Mismatches: 7, Indels: 10
0.78 0.09 0.13
Matches are distributed among these distances:
20 4 0.07
21 52 0.88
22 3 0.05
ACGTcount: A:0.12, C:0.46, G:0.24, T:0.18
Consensus pattern (21 bp):
ACGTCGCCTTCGTACCTGCCG
Left flanking sequence: Indices 273544 -- 274043
AGTCCGGTGGGTTGACTTCGTACGGAGGCATGCCTCAGCTGCCTGGGGCGGCCACGTCGCCGTTC
AACTTCCCGACTTCGCCGTCGTTCCTGGGAGCTACGCTGCCGGGTTACGGTGGTGTCACCTCGCC
TCTGTACTCGCCTACGTCGCCGCTGTACTCTCCCACGTCCCCTTCGTACTCGCCTACGTCGCCCT
CGTACAGCCCGACGTCTCCCCTGTACAGTCCCACGTCTCCTCTGTACTCGCCGACGTCCCCTTCG
TACAGTCCCACCTCGCCTCTGTACTCGCCGACGTCGCCGTCTTACAGCCCGACGTCGCCGCTGTA
CTCGCCCACTTCGCCGTCGTACTCGCCTACGTCGCCGTCGTACTCCCCCACGCTGCCGTCGTACT
CGCCTACGTCGCCCAGCTACTCGCCGACGTCGCCTTCTTACAGCCCGACGTCGCCGTCCTACAGC
CCCACCTCTCCTCTGTACCTGCCGACGCTGCCGCTGTACTCGCCC
Right flanking sequence: Indices 274136 -- 274635
GCAGTACAGCCCCACTCTGCCCAGCTACTCGCCTGGGTCGCCGCAGTACACCCCTCCGGAGCCCA
AGAAGGAAGAGGAAAAGTAACCTGTTTGATGATTGTACTATTAAAACCAAAAAAATGCACTAATA
CTTCATATAGAAATTCACGAAACATTAATCATTTTGGTGTACAATCAACATAGTAGATCACTTCT
TACATACCGTGGCGTGGTCAACGAACGCTTCATACGACGGACAGAACTGCTCACAAGCCTTACAA
AACCCGGGTTTCTCGGCCCCTCCGTTCCTGATTGCATTGTAGTGGACAGTCATGTGTCGTTTTAG
GGTGTAGGGGCGGCTGAACCGTGGCGTGGTACAAATTGGGTTGTTTTCGTGGTAAAACGGGCAAA
CATTGGAGCCCAGAGACTTAGTTTGCTCCACTTGCACATTCTTGGGATTAGCTTCCCGCTCCAAG
TTGGTGGCCCTCTTTAACTTCTTTGTAGGTCGCTCGGGAGCTTTC
Found at i:274132 original size:42 final size:40
Alignment explanation
Indices: 274013--274136 Score: 142
Period size: 42 Copynumber: 3.0 Consensus size: 40
274003 CCTCTCCTCT
274013 GTACCTGCCGACGCTGCCGCTGTACTCGCCCACGTCGCCGTC
1 GTACCTGCCGACGCTGCCGC-GTACT-GCCCACGTCGCCGTC
* * * *
274055 GTACCTGCCGACG-TCGCCTTCCTACAGCCCGACGTCGCCTTC
1 GTACCTGCCGACGCT-GCC-GCGTACTGCCC-ACGTCGCCGTC
274097 GTACCTGCCGACGCTGCCGCAGTACCTGCCCACGTCGCCG
1 GTACCTGCCGACGCTGCCGC-GTA-CTGCCCACGTCGCCG
274137 CAGTACAGCC
Statistics
Matches: 68, Mismatches: 8, Indels: 12
0.77 0.09 0.14
Matches are distributed among these distances:
41 6 0.09
42 55 0.81
43 7 0.10
ACGTcount: A:0.11, C:0.45, G:0.25, T:0.19
Consensus pattern (40 bp):
GTACCTGCCGACGCTGCCGCGTACTGCCCACGTCGCCGTC
Left flanking sequence: Indices 273513 -- 274012
TTCTCGCCCATCCACACCGCCCAGGTGGGCGAGTCCGGTGGGTTGACTTCGTACGGAGGCATGCC
TCAGCTGCCTGGGGCGGCCACGTCGCCGTTCAACTTCCCGACTTCGCCGTCGTTCCTGGGAGCTA
CGCTGCCGGGTTACGGTGGTGTCACCTCGCCTCTGTACTCGCCTACGTCGCCGCTGTACTCTCCC
ACGTCCCCTTCGTACTCGCCTACGTCGCCCTCGTACAGCCCGACGTCTCCCCTGTACAGTCCCAC
GTCTCCTCTGTACTCGCCGACGTCCCCTTCGTACAGTCCCACCTCGCCTCTGTACTCGCCGACGT
CGCCGTCTTACAGCCCGACGTCGCCGCTGTACTCGCCCACTTCGCCGTCGTACTCGCCTACGTCG
CCGTCGTACTCCCCCACGCTGCCGTCGTACTCGCCTACGTCGCCCAGCTACTCGCCGACGTCGCC
TTCTTACAGCCCGACGTCGCCGTCCTACAGCCCCACCTCTCCTCT
Right flanking sequence: Indices 274137 -- 274636
CAGTACAGCCCCACTCTGCCCAGCTACTCGCCTGGGTCGCCGCAGTACACCCCTCCGGAGCCCAA
GAAGGAAGAGGAAAAGTAACCTGTTTGATGATTGTACTATTAAAACCAAAAAAATGCACTAATAC
TTCATATAGAAATTCACGAAACATTAATCATTTTGGTGTACAATCAACATAGTAGATCACTTCTT
ACATACCGTGGCGTGGTCAACGAACGCTTCATACGACGGACAGAACTGCTCACAAGCCTTACAAA
ACCCGGGTTTCTCGGCCCCTCCGTTCCTGATTGCATTGTAGTGGACAGTCATGTGTCGTTTTAGG
GTGTAGGGGCGGCTGAACCGTGGCGTGGTACAAATTGGGTTGTTTTCGTGGTAAAACGGGCAAAC
ATTGGAGCCCAGAGACTTAGTTTGCTCCACTTGCACATTCTTGGGATTAGCTTCCCGCTCCAAGT
TGGTGGCCCTCTTTAACTTCTTTGTAGGTCGCTCGGGAGCTTTCT
Found at i:274136 original size:21 final size:20
Alignment explanation
Indices: 274013--274142 Score: 79
Period size: 21 Copynumber: 6.2 Consensus size: 20
274003 CCTCTCCTCT
*
274013 GTACCTGCCGACG-CTGCCGC
1 GTACCTGCCCACGTC-GCCGC
274033 TGTA-CTCGCCCACGTCGCCGTC
1 -GTACCT-GCCCACGTCGCCG-C
* *
274055 GTACCTGCCGACGTCGCCTTC
1 GTACCTGCCCACGTCGCC-GC
* * *
274076 CTA-CAGCCCGACGTCGCCTTC
1 GTACCTGCCC-ACGTCGCC-GC
*
274097 GTACCTGCCGACG-CTGCCGC
1 GTACCTGCCCACGTC-GCCGC
274117 AGTACCTGCCCACGTCGCCGC
1 -GTACCTGCCCACGTCGCCGC
274138 AGTAC
1 -GTAC
274143 AGCCCCACTC
Statistics
Matches: 88, Mismatches: 11, Indels: 20
0.74 0.09 0.17
Matches are distributed among these distances:
20 8 0.09
21 71 0.81
22 9 0.10
ACGTcount: A:0.12, C:0.45, G:0.25, T:0.18
Consensus pattern (20 bp):
GTACCTGCCCACGTCGCCGC
Left flanking sequence: Indices 273513 -- 274012
TTCTCGCCCATCCACACCGCCCAGGTGGGCGAGTCCGGTGGGTTGACTTCGTACGGAGGCATGCC
TCAGCTGCCTGGGGCGGCCACGTCGCCGTTCAACTTCCCGACTTCGCCGTCGTTCCTGGGAGCTA
CGCTGCCGGGTTACGGTGGTGTCACCTCGCCTCTGTACTCGCCTACGTCGCCGCTGTACTCTCCC
ACGTCCCCTTCGTACTCGCCTACGTCGCCCTCGTACAGCCCGACGTCTCCCCTGTACAGTCCCAC
GTCTCCTCTGTACTCGCCGACGTCCCCTTCGTACAGTCCCACCTCGCCTCTGTACTCGCCGACGT
CGCCGTCTTACAGCCCGACGTCGCCGCTGTACTCGCCCACTTCGCCGTCGTACTCGCCTACGTCG
CCGTCGTACTCCCCCACGCTGCCGTCGTACTCGCCTACGTCGCCCAGCTACTCGCCGACGTCGCC
TTCTTACAGCCCGACGTCGCCGTCCTACAGCCCCACCTCTCCTCT
Right flanking sequence: Indices 274143 -- 274642
AGCCCCACTCTGCCCAGCTACTCGCCTGGGTCGCCGCAGTACACCCCTCCGGAGCCCAAGAAGGA
AGAGGAAAAGTAACCTGTTTGATGATTGTACTATTAAAACCAAAAAAATGCACTAATACTTCATA
TAGAAATTCACGAAACATTAATCATTTTGGTGTACAATCAACATAGTAGATCACTTCTTACATAC
CGTGGCGTGGTCAACGAACGCTTCATACGACGGACAGAACTGCTCACAAGCCTTACAAAACCCGG
GTTTCTCGGCCCCTCCGTTCCTGATTGCATTGTAGTGGACAGTCATGTGTCGTTTTAGGGTGTAG
GGGCGGCTGAACCGTGGCGTGGTACAAATTGGGTTGTTTTCGTGGTAAAACGGGCAAACATTGGA
GCCCAGAGACTTAGTTTGCTCCACTTGCACATTCTTGGGATTAGCTTCCCGCTCCAAGTTGGTGG
CCCTCTTTAACTTCTTTGTAGGTCGCTCGGGAGCTTTCTCAACGT
Found at i:275274 original size:12 final size:12
Alignment explanation
Indices: 275257--275282 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
275247 CTTCTGGTTA
275257 GCGGGGGCAGCG
1 GCGGGGGCAGCG
275269 GCGGGGGCAGCG
1 GCGGGGGCAGCG
275281 GC
1 GC
275283 AGTGTTAGAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.08, C:0.27, G:0.65, T:0.00
Consensus pattern (12 bp):
GCGGGGGCAGCG
Left flanking sequence: Indices 274757 -- 275256
GGTCGTCAAGCAGTGCCAACCGAGCATCAACCGAGTCCTGCCATTGAGAAATAAGAGTGAACTGC
GTCATGACCAGCAAATTTTCCTTTTCGTCAGCGGGCTTAAGAGGTACTAGGGTGCGAGCCATAGC
CGTGGAGTGCAATTACATCTGAGATACCTACCCCTTTTATAGTAAGTTATCACGCTTACCTGTCC
GTCGCGTCTCACTTACCAAAACGGTATGCATCATCCCACGCGCGGGGAGCACACCTGAGGTGCAA
AAATACAACACGAAGAATCTAGAACAATCATTAATTCCAATAACGCTGGACTACAGTATTTCTAA
AACGTGTTGTATTATATTGCGTGTCTATGGCCAATAACCAAGGTATCGCAATCTATAAATTATAT
CAACCGAAACTAACTCAACGGGTATGCTAATGTACAAAGAAGGAGAATGGGATCCAGTCCCAATA
CCAGTCTAACTAATTTAGTACATGGTTCTTCTCTTCTTCTGGTTA
Right flanking sequence: Indices 275283 -- 275782
AGTGTTAGAGTTGCCACCGAACAAGCCAAGGACAAAGTCAATGAGAGCCTTGAAGATGTTACCAA
TGTTCTCGCCCAACCACTTGAGAGCAGCGTCAATCAAGCCGGCGTTCTTAGCCCACTGGTAGAGG
GTCTGCACCAACGACCAGATGTAAGAAGAAGCCTGCTGCAACAAAGACCAGAACTGGTCAGGGTT
GGTCTTGATCCAGTTGACAACCCACGAGAAGACAGACTGGATGATACCAGAGTTCCACACGGCGG
AGACAATGTTGGCCAAGATCTCGCCGAAGTTGATGTCATCTCTGGCCATCAAGCCAGCGAACTCG
TCAACCATCTCGTGGACCTCACGCTTCTGGTTAGAACCACCGGTCAACATGTTGAGGACGGTGTT
GATACCCTCCTTCACCAAGTTCCAGATGGCGGACTGCAAGCCCTGGTCAGTGACCAACTTGTTGA
AGATGTTCTGCAACAAACCAGAGTTCCAGATGGCAGAAATCAAGT
Done.