Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: scaffold91
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 81576
ACGTcount: A:0.21, C:0.29, G:0.28, T:0.22
File 1 of 2
Found at i:1099 original size:18 final size:18
Alignment explanation
Indices: 1078--1116 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
1068 CGCGGATCCT
* *
1078 GAAGCACCAGCGGCTCAA
1 GAAGAACCAGCGACTCAA
1096 GAAGAACCAGCGACTCAA
1 GAAGAACCAGCGACTCAA
1114 GAA
1 GAA
1117 AAAGAAGGCG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.41, C:0.28, G:0.26, T:0.05
Consensus pattern (18 bp):
GAAGAACCAGCGACTCAA
Left flanking sequence: Indices 578 -- 1077
CACATTCTGTTGGGCCCGTATGCTATGTTTCACCTCCCATTGGGACAATTTAGACAGAGTAAAGC
CATTAGAGTCAGCCATCAGATAGTCTCAACCACCAGACTACGACTCCACAACAAACACCGATCTA
TCCAGAACCCAAAAAGCCCACCGAAAAAACCTCAATTGCGACCCATTTGCTTGCCCGTCTCATAC
CATTACTCCCCCTTCACACCTACTTCTGGAGTGCTTTGGTTATGAGCACTTCTTGGTATTCGTCA
CGAGCCCGCGGGCTCATCGCACCCATCGCTATCACCAACCCACGCTATCGCCCCACCCATGAGTT
TCTCGTCCAAAAACTCGCAGAAACGGGCTGAGACCTCGGTCAACAAGCTCTTCGCGGGGCTTCTT
CCCCTGGTGGACGTTTCCCTGGCCAAAAACACCGCCAAGACCTCCAAGGGGTCCCAGGCCGAGCA
GTTGGCCCACCAGTTGGCGCCACAGCAGGACTTGGCGCGGATCCT
Right flanking sequence: Indices 1117 -- 1616
AAAGAAGGCGGACCAGCAGAAATACGACAAGCTCGTCAAGTACACCATTGCCCGGCTGAAACGGG
ACAACCTCACCGAGGAGGAGCTGAAGCTTCTCCGCAAGCTTGTCAAGGGCAATTTGCGGGCCATC
AACCGGTTGGGCGAGTACGAGGACCCTGAGATTGAGGACGAGACCGAGGAGCTCGAAGAGGAGTT
GATCCGCGAGCTCGGGCCCAAGGAGTTGACCCGGAAGGTCAAGAAGACGCTTGTCAGTCACCACT
TGAAGCGGAAGACCGCGGTGGACCAGCTGTTTGAGGCCAAGATGGCCCGTGGCGAGGTGGCGGCG
CCTGGGTTGACCCCGGGCTTGGCCCCGGTGGACTACGAGTCGTCGGACGAAGAGGACGAGTAGGG
AGTAAGGGGCATGGAGACGTTGATTTGAGAGATCAGCATGCGAGGTTTGCAAATGGTGCTTGGCT
AGCACGGTGGCCAGGCTAGTACGGTGGCCTTGCTAGTACGGTGTG
Found at i:1590 original size:17 final size:17
Alignment explanation
Indices: 1568--1614 Score: 67
Period size: 17 Copynumber: 2.8 Consensus size: 17
1558 AATGGTGCTT
*
1568 GGCTAGCACGGTGGCCA
1 GGCTAGTACGGTGGCCA
*
1585 GGCTAGTACGGTGGCCT
1 GGCTAGTACGGTGGCCA
*
1602 TGCTAGTACGGTG
1 GGCTAGTACGGTG
1615 TGGCCTGGCA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 27 1.00
ACGTcount: A:0.15, C:0.23, G:0.40, T:0.21
Consensus pattern (17 bp):
GGCTAGTACGGTGGCCA
Left flanking sequence: Indices 1068 -- 1567
CGCGGATCCTGAAGCACCAGCGGCTCAAGAAGAACCAGCGACTCAAGAAAAAGAAGGCGGACCAG
CAGAAATACGACAAGCTCGTCAAGTACACCATTGCCCGGCTGAAACGGGACAACCTCACCGAGGA
GGAGCTGAAGCTTCTCCGCAAGCTTGTCAAGGGCAATTTGCGGGCCATCAACCGGTTGGGCGAGT
ACGAGGACCCTGAGATTGAGGACGAGACCGAGGAGCTCGAAGAGGAGTTGATCCGCGAGCTCGGG
CCCAAGGAGTTGACCCGGAAGGTCAAGAAGACGCTTGTCAGTCACCACTTGAAGCGGAAGACCGC
GGTGGACCAGCTGTTTGAGGCCAAGATGGCCCGTGGCGAGGTGGCGGCGCCTGGGTTGACCCCGG
GCTTGGCCCCGGTGGACTACGAGTCGTCGGACGAAGAGGACGAGTAGGGAGTAAGGGGCATGGAG
ACGTTGATTTGAGAGATCAGCATGCGAGGTTTGCAAATGGTGCTT
Right flanking sequence: Indices 1615 -- 2114
TGGCCTGGCAAACACGGTGGTGGCCTCTTCGGACCGATATCGCGGTCACCAACCAGGATACATGA
TAGATAGGTACATGAGACATACTAAGAAACGGTAAATTGAGTTTGAGGCGTAATGTAATCTCACT
TTCTGTTGCGACCCGACTTAGGGTCAGAAGCCAGCTTTGGCGTGGTCCTGGTGGCTGCAACCATA
TGGTGTAAATGTACTGCACATAACAAGTATAATACATTAGGGAACTGTGAAAACTCCGAGGTCAC
TGTGTCGAATAGAAGGTAATGACTACAGTCGATGTGTGTCTTTTGTGGGTAACTAGTACGTTGGT
AAATTTCATATTTACAATAGCTACGACAAATGTGAGTTTTGAAGATATTTGTAGAAAATCTTGGA
TTATACTCCACTGCAATAAAGATGGAAATAGTTTGATCGAAGTTCTATAACGTTTGTGCTCAACA
CTATCATCATTCAGTATTCAACTGTTCTGAATTATCCAACTCATC
Found at i:2456 original size:15 final size:15
Alignment explanation
Indices: 2436--2489 Score: 72
Period size: 15 Copynumber: 3.6 Consensus size: 15
2426 CAATGTGCTA
*
2436 CTACCATCTCAACGT
1 CTACCATCTCAACTT
**
2451 CTACCATCTCTTCTT
1 CTACCATCTCAACTT
2466 CTACCATCTCAACTT
1 CTACCATCTCAACTT
*
2481 CTACAATCT
1 CTACCATCT
2490 TTTAAAAGTT
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
15 33 1.00
ACGTcount: A:0.24, C:0.39, G:0.02, T:0.35
Consensus pattern (15 bp):
CTACCATCTCAACTT
Left flanking sequence: Indices 1936 -- 2435
TGGTAAATTTCATATTTACAATAGCTACGACAAATGTGAGTTTTGAAGATATTTGTAGAAAATCT
TGGATTATACTCCACTGCAATAAAGATGGAAATAGTTTGATCGAAGTTCTATAACGTTTGTGCTC
AACACTATCATCATTCAGTATTCAACTGTTCTGAATTATCCAACTCATCGCTTTATTGACAACCT
TTGGGCCCCATTTATTGGTCAAAAACCTCTCTTCCATCCACGTCCAGCCCAAACGACACATCGTC
CTCGAAATCCAACGGGACATGCAAATGGTCCCAGGACCATGGTGAATGCCGCGAATACAACGAGG
ATCAGCATGCCCCGTACCCTCGATATCAGATTTTTTCAGGATTGTAACTTCTAAATTAGGGTCTT
TCCCGCGACCTCCCACATTTCCATGGACTTTGGCGTACTATGGTCGAACATACCGCTGAATCGAG
GATGGGTTTAGTTTGCCATGTAAGCCGAAACAAATCAATGTGCTA
Right flanking sequence: Indices 2490 -- 2989
TTTAAAAGTTCTGTCACTATTAATCTCTACATAAGTTCTCTACACACCTAACAAAAATCTCTAGT
TATCCCACTATAATGTCATGTCTCATTACTATGCTAGCCTAACTAAAGATCGAGCTTCTGATCGC
CCGGATAGGCGACCGGCTCCGGTACGACTCGTCCTCCGACGGCGGAGAGCCGGCCCCCAGCGTCG
GCGGCAGCGGCTGTTGCGACCGCGGCCGTGGCTGGGACCGTGGAGGCCGTCGCTTCGGCATAAAC
ACCGAGGACGCCAGGGCTGGTCGTTTCCTCTCCGAAACTGGGGTTGCCTGGGCAACAGGGCTCCT
ACCACGGGCCCGCGGAGGCGGTGGTGGTGGCGAATGCAGGGGTGGTGGATGCGGTGGGGGTGGGA
GATCGTCGAGGATGATGACGTCGTCGTCGGATAGACTTGGTTCGGGCTCGGGACGGACTCGAGGC
CGTCTGCGCCGTGGCGGCGACTCTGAGCGCGGGGGAGCCACCACC
Found at i:5973 original size:11 final size:11
Alignment explanation
Indices: 5959--6010 Score: 72
Period size: 11 Copynumber: 4.8 Consensus size: 11
5949 GACACCCAAC
5959 AGACAGAAACA
1 AGACAGAAACA
5970 AGACAG--ACA
1 AGACAGAAACA
*
5979 AGACAGAAAGA
1 AGACAGAAACA
5990 AGACAGAAAACA
1 AGACAG-AAACA
6002 AGACAGAAA
1 AGACAGAAA
6011 ACAGCGGTGG
Statistics
Matches: 36, Mismatches: 2, Indels: 6
0.82 0.05 0.14
Matches are distributed among these distances:
9 9 0.25
11 17 0.47
12 10 0.28
ACGTcount: A:0.63, C:0.15, G:0.21, T:0.00
Consensus pattern (11 bp):
AGACAGAAACA
Left flanking sequence: Indices 5459 -- 5958
GCATGGAGGTTGCATCCGGAGAAAGCTAGCCCGGCTGCTTTTACTGGATTCCGCAAGTGTTTTGC
TGGGTTTTTGACACTATACCGCATCTGGTAATCTACATCGGAAGCTGAAACAAATGAGTACATGG
AAAATGACAGAAAAATATGAAGCAAAAAATTGAGCAAGACGTGGATAAAAGCAGAAAAGACGCTA
TATATTTATGGTTGTTGCCCCACTGATTTAGAGCCACCGCTCGCCCGGTGTCTTTCCCTTTCGCA
GTTTCATCTCAGGGTTTTGTTCGAGGCGGCCCTAAGCCCGAAGAGTACCGAAACAAAGGTCGAAG
CGGGTGAACTCCCACCATGTGACAATTAGTGTCGGCAGCGTCGCCGCTGGGGCTGAACAAAGCAA
TTTTTGACGACAGGAAGCGCAGTGACACGACTGCCAAATGGGACGATCGTGGCTGGATCGGGAAA
GGCACCACAGATCGTGGAGAAAGGCAGGTGTAGATGACACCCAAC
Right flanking sequence: Indices 6011 -- 6510
ACAGCGGTGGGTAGTGTTAACGCCGTAAAACCGGTTTTAAGTCACCACCTGACCCAGAGTAACCA
GAGTTTGGGCGTTTCCTCATGAAACAATGACGAGGCACTTCGAGTGCCCATCGTGCGTGGCGTGG
TTCGCTCCCCGCCTCCAATTTACACGGCATTTCCAGCGCTAATGTTGGAGCGATGTCCACCTGAT
GTTTCATCCACGTCCTGCTCTCTTAAAGTTTCGTCTGTTCAATTCATGGCTGCAAATATCTCAAT
ACCACCCAAGAACATCCCAATACTGCCCAAAAACCGCCCAAAAACCGCCCAAAAACCGCCCAAAA
ACTGACCAATACACCCAATAACCACCCAAACCACCACCAAAACTCCCAATACACCCAATAATCAC
CCAATAACCACCAAAACCACCAAAACCACCTCTCACCATTAGCCTGAAATTAGCTTTTCTTAATA
TTACATATAGTACAAATGCTGTGGCCGGAGCCTACCGTCTGTGGG
Found at i:5984 original size:20 final size:21
Alignment explanation
Indices: 5959--6010 Score: 70
Period size: 20 Copynumber: 2.4 Consensus size: 21
5949 GACACCCAAC
5959 AGACAGAAACAAGACAG-ACA
1 AGACAGAAACAAGACAGAACA
*
5979 AGACAGAAAGAAGACAGAAAACA
1 AGACAGAAACAAGACAG--AACA
6002 AGACAGAAA
1 AGACAGAAA
6011 ACAGCGGTGG
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
20 16 0.57
23 12 0.43
ACGTcount: A:0.63, C:0.15, G:0.21, T:0.00
Consensus pattern (21 bp):
AGACAGAAACAAGACAGAACA
Left flanking sequence: Indices 5459 -- 5958
GCATGGAGGTTGCATCCGGAGAAAGCTAGCCCGGCTGCTTTTACTGGATTCCGCAAGTGTTTTGC
TGGGTTTTTGACACTATACCGCATCTGGTAATCTACATCGGAAGCTGAAACAAATGAGTACATGG
AAAATGACAGAAAAATATGAAGCAAAAAATTGAGCAAGACGTGGATAAAAGCAGAAAAGACGCTA
TATATTTATGGTTGTTGCCCCACTGATTTAGAGCCACCGCTCGCCCGGTGTCTTTCCCTTTCGCA
GTTTCATCTCAGGGTTTTGTTCGAGGCGGCCCTAAGCCCGAAGAGTACCGAAACAAAGGTCGAAG
CGGGTGAACTCCCACCATGTGACAATTAGTGTCGGCAGCGTCGCCGCTGGGGCTGAACAAAGCAA
TTTTTGACGACAGGAAGCGCAGTGACACGACTGCCAAATGGGACGATCGTGGCTGGATCGGGAAA
GGCACCACAGATCGTGGAGAAAGGCAGGTGTAGATGACACCCAAC
Right flanking sequence: Indices 6011 -- 6510
ACAGCGGTGGGTAGTGTTAACGCCGTAAAACCGGTTTTAAGTCACCACCTGACCCAGAGTAACCA
GAGTTTGGGCGTTTCCTCATGAAACAATGACGAGGCACTTCGAGTGCCCATCGTGCGTGGCGTGG
TTCGCTCCCCGCCTCCAATTTACACGGCATTTCCAGCGCTAATGTTGGAGCGATGTCCACCTGAT
GTTTCATCCACGTCCTGCTCTCTTAAAGTTTCGTCTGTTCAATTCATGGCTGCAAATATCTCAAT
ACCACCCAAGAACATCCCAATACTGCCCAAAAACCGCCCAAAAACCGCCCAAAAACCGCCCAAAA
ACTGACCAATACACCCAATAACCACCCAAACCACCACCAAAACTCCCAATACACCCAATAATCAC
CCAATAACCACCAAAACCACCAAAACCACCTCTCACCATTAGCCTGAAATTAGCTTTTCTTAATA
TTACATATAGTACAAATGCTGTGGCCGGAGCCTACCGTCTGTGGG
Found at i:6344 original size:11 final size:11
Alignment explanation
Indices: 6295--6337 Score: 86
Period size: 11 Copynumber: 3.9 Consensus size: 11
6285 TCCCAATACT
6295 GCCCAAAAACC
1 GCCCAAAAACC
6306 GCCCAAAAACC
1 GCCCAAAAACC
6317 GCCCAAAAACC
1 GCCCAAAAACC
6328 GCCCAAAAAC
1 GCCCAAAAAC
6338 TGACCAATAC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 32 1.00
ACGTcount: A:0.47, C:0.44, G:0.09, T:0.00
Consensus pattern (11 bp):
GCCCAAAAACC
Left flanking sequence: Indices 5795 -- 6294
CCACCATGTGACAATTAGTGTCGGCAGCGTCGCCGCTGGGGCTGAACAAAGCAATTTTTGACGAC
AGGAAGCGCAGTGACACGACTGCCAAATGGGACGATCGTGGCTGGATCGGGAAAGGCACCACAGA
TCGTGGAGAAAGGCAGGTGTAGATGACACCCAACAGACAGAAACAAGACAGACAAGACAGAAAGA
AGACAGAAAACAAGACAGAAAACAGCGGTGGGTAGTGTTAACGCCGTAAAACCGGTTTTAAGTCA
CCACCTGACCCAGAGTAACCAGAGTTTGGGCGTTTCCTCATGAAACAATGACGAGGCACTTCGAG
TGCCCATCGTGCGTGGCGTGGTTCGCTCCCCGCCTCCAATTTACACGGCATTTCCAGCGCTAATG
TTGGAGCGATGTCCACCTGATGTTTCATCCACGTCCTGCTCTCTTAAAGTTTCGTCTGTTCAATT
CATGGCTGCAAATATCTCAATACCACCCAAGAACATCCCAATACT
Right flanking sequence: Indices 6338 -- 6837
TGACCAATACACCCAATAACCACCCAAACCACCACCAAAACTCCCAATACACCCAATAATCACCC
AATAACCACCAAAACCACCAAAACCACCTCTCACCATTAGCCTGAAATTAGCTTTTCTTAATATT
ACATATAGTACAAATGCTGTGGCCGGAGCCTACCGTCTGTGGGCGTGGAGCTTGCAAAGCAACCG
CATAAGCTGTCTGTCCGACATCTGGGGCGCCGTCAGCGCGACGAACGCCGCGAGCCGCCGGTCGA
TGGTGGGCTCGATCTCGTGCTCGATCTTGTCGCTCACCACGTTGAAAATGGCGTCCACCTCGTGG
CACCGCTGGCCCAACTCGTCGACTATGGCGTCGATGTCCTGCAGACGAGCAGTGGCCTCCAGGGC
ACGCAACCTGTTGAGCGCCGCCTGGGCCTCAGGTGGCACCACCGGGTGGGGCGCAGGCACCGGGG
TGGCCCCGAGCGCGCCCACTGCACGCACCGCCTGGTCGCGGCGGG
Found at i:6344 original size:22 final size:22
Alignment explanation
Indices: 6292--6344 Score: 88
Period size: 22 Copynumber: 2.4 Consensus size: 22
6282 ACATCCCAAT
6292 ACTGCCCAAAAACCGCCCAAAA
1 ACTGCCCAAAAACCGCCCAAAA
*
6314 ACCGCCCAAAAACCGCCCAAAA
1 ACTGCCCAAAAACCGCCCAAAA
*
6336 ACTGACCAA
1 ACTGCCCAA
6345 TACACCCAAT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.45, C:0.42, G:0.09, T:0.04
Consensus pattern (22 bp):
ACTGCCCAAAAACCGCCCAAAA
Left flanking sequence: Indices 5792 -- 6291
CTCCCACCATGTGACAATTAGTGTCGGCAGCGTCGCCGCTGGGGCTGAACAAAGCAATTTTTGAC
GACAGGAAGCGCAGTGACACGACTGCCAAATGGGACGATCGTGGCTGGATCGGGAAAGGCACCAC
AGATCGTGGAGAAAGGCAGGTGTAGATGACACCCAACAGACAGAAACAAGACAGACAAGACAGAA
AGAAGACAGAAAACAAGACAGAAAACAGCGGTGGGTAGTGTTAACGCCGTAAAACCGGTTTTAAG
TCACCACCTGACCCAGAGTAACCAGAGTTTGGGCGTTTCCTCATGAAACAATGACGAGGCACTTC
GAGTGCCCATCGTGCGTGGCGTGGTTCGCTCCCCGCCTCCAATTTACACGGCATTTCCAGCGCTA
ATGTTGGAGCGATGTCCACCTGATGTTTCATCCACGTCCTGCTCTCTTAAAGTTTCGTCTGTTCA
ATTCATGGCTGCAAATATCTCAATACCACCCAAGAACATCCCAAT
Right flanking sequence: Indices 6345 -- 6844
TACACCCAATAACCACCCAAACCACCACCAAAACTCCCAATACACCCAATAATCACCCAATAACC
ACCAAAACCACCAAAACCACCTCTCACCATTAGCCTGAAATTAGCTTTTCTTAATATTACATATA
GTACAAATGCTGTGGCCGGAGCCTACCGTCTGTGGGCGTGGAGCTTGCAAAGCAACCGCATAAGC
TGTCTGTCCGACATCTGGGGCGCCGTCAGCGCGACGAACGCCGCGAGCCGCCGGTCGATGGTGGG
CTCGATCTCGTGCTCGATCTTGTCGCTCACCACGTTGAAAATGGCGTCCACCTCGTGGCACCGCT
GGCCCAACTCGTCGACTATGGCGTCGATGTCCTGCAGACGAGCAGTGGCCTCCAGGGCACGCAAC
CTGTTGAGCGCCGCCTGGGCCTCAGGTGGCACCACCGGGTGGGGCGCAGGCACCGGGGTGGCCCC
GAGCGCGCCCACTGCACGCACCGCCTGGTCGCGGCGGGAGCTCGC
Found at i:6361 original size:11 final size:11
Alignment explanation
Indices: 6267--6430 Score: 63
Period size: 11 Copynumber: 16.0 Consensus size: 11
6257 GCAAATATCT
6267 CAAT-ACCACC
1 CAATAACCACC
*
6277 CAAGAA-CATCC
1 CAATAACCA-CC
**
6288 CAAT-ACTGCC
1 CAATAACCACC
* *
6298 CAAAAACCGCC
1 CAATAACCACC
* *
6309 CAAAAACCGCC
1 CAATAACCACC
* *
6320 CAAAAACCGCC
1 CAATAACCACC
* *
6331 CAAAAACTGA-C
1 CAATAAC-CACC
6342 CAAT-A-CACC
1 CAATAACCACC
6351 CAATAACCACC
1 CAATAACCACC
6362 C-A-AACCACCAC
1 CAATAACCA-C-C
*
6373 CAA-AA-CTCC
1 CAATAACCACC
6382 CAAT-A-CACC
1 CAATAACCACC
*
6391 CAATAATCACC
1 CAATAACCACC
6402 CAATAACCA-C
1 CAATAACCACC
6412 CAA-AACCA-C
1 CAATAACCACC
6421 CAA-AACCACC
1 CAATAACCACC
6431 TCTCACCATT
Statistics
Matches: 126, Mismatches: 13, Indels: 30
0.75 0.08 0.18
Matches are distributed among these distances:
8 1 0.01
9 36 0.29
10 22 0.17
11 64 0.51
12 3 0.02
ACGTcount: A:0.46, C:0.43, G:0.04, T:0.07
Consensus pattern (11 bp):
CAATAACCACC
Left flanking sequence: Indices 5767 -- 6266
CGAAACAAAGGTCGAAGCGGGTGAACTCCCACCATGTGACAATTAGTGTCGGCAGCGTCGCCGCT
GGGGCTGAACAAAGCAATTTTTGACGACAGGAAGCGCAGTGACACGACTGCCAAATGGGACGATC
GTGGCTGGATCGGGAAAGGCACCACAGATCGTGGAGAAAGGCAGGTGTAGATGACACCCAACAGA
CAGAAACAAGACAGACAAGACAGAAAGAAGACAGAAAACAAGACAGAAAACAGCGGTGGGTAGTG
TTAACGCCGTAAAACCGGTTTTAAGTCACCACCTGACCCAGAGTAACCAGAGTTTGGGCGTTTCC
TCATGAAACAATGACGAGGCACTTCGAGTGCCCATCGTGCGTGGCGTGGTTCGCTCCCCGCCTCC
AATTTACACGGCATTTCCAGCGCTAATGTTGGAGCGATGTCCACCTGATGTTTCATCCACGTCCT
GCTCTCTTAAAGTTTCGTCTGTTCAATTCATGGCTGCAAATATCT
Right flanking sequence: Indices 6431 -- 6930
TCTCACCATTAGCCTGAAATTAGCTTTTCTTAATATTACATATAGTACAAATGCTGTGGCCGGAG
CCTACCGTCTGTGGGCGTGGAGCTTGCAAAGCAACCGCATAAGCTGTCTGTCCGACATCTGGGGC
GCCGTCAGCGCGACGAACGCCGCGAGCCGCCGGTCGATGGTGGGCTCGATCTCGTGCTCGATCTT
GTCGCTCACCACGTTGAAAATGGCGTCCACCTCGTGGCACCGCTGGCCCAACTCGTCGACTATGG
CGTCGATGTCCTGCAGACGAGCAGTGGCCTCCAGGGCACGCAACCTGTTGAGCGCCGCCTGGGCC
TCAGGTGGCACCACCGGGTGGGGCGCAGGCACCGGGGTGGCCCCGAGCGCGCCCACTGCACGCAC
CGCCTGGTCGCGGCGGGAGCTCGCAAGCGCCTCCCATTCGCGGATCTCCGCTTCCAAACGGGCCA
CCTCGGCCTCGTAGTAGGCGATCATCTCGTAGTTGCGCTGGTTGT
Found at i:6364 original size:20 final size:19
Alignment explanation
Indices: 6341--6406 Score: 64
Period size: 20 Copynumber: 3.3 Consensus size: 19
6331 CAAAAACTGA
6341 CCAATACACCCAATAACCAC
1 CCAATACACCCAATAA-CAC
*
6361 CCAA-ACCACCACCAA-AACTC
1 CCAATA-CA-C-CCAATAACAC
6381 CCAATACACCCAATAATCAC
1 CCAATACACCCAATAA-CAC
6401 CCAATA
1 CCAATA
6407 ACCACCAAAA
Statistics
Matches: 38, Mismatches: 2, Indels: 12
0.73 0.04 0.23
Matches are distributed among these distances:
18 4 0.11
19 4 0.11
20 22 0.58
21 4 0.11
22 4 0.11
ACGTcount: A:0.45, C:0.44, G:0.00, T:0.11
Consensus pattern (19 bp):
CCAATACACCCAATAACAC
Left flanking sequence: Indices 5841 -- 6340
CAAAGCAATTTTTGACGACAGGAAGCGCAGTGACACGACTGCCAAATGGGACGATCGTGGCTGGA
TCGGGAAAGGCACCACAGATCGTGGAGAAAGGCAGGTGTAGATGACACCCAACAGACAGAAACAA
GACAGACAAGACAGAAAGAAGACAGAAAACAAGACAGAAAACAGCGGTGGGTAGTGTTAACGCCG
TAAAACCGGTTTTAAGTCACCACCTGACCCAGAGTAACCAGAGTTTGGGCGTTTCCTCATGAAAC
AATGACGAGGCACTTCGAGTGCCCATCGTGCGTGGCGTGGTTCGCTCCCCGCCTCCAATTTACAC
GGCATTTCCAGCGCTAATGTTGGAGCGATGTCCACCTGATGTTTCATCCACGTCCTGCTCTCTTA
AAGTTTCGTCTGTTCAATTCATGGCTGCAAATATCTCAATACCACCCAAGAACATCCCAATACTG
CCCAAAAACCGCCCAAAAACCGCCCAAAAACCGCCCAAAAACTGA
Right flanking sequence: Indices 6407 -- 6906
ACCACCAAAACCACCAAAACCACCTCTCACCATTAGCCTGAAATTAGCTTTTCTTAATATTACAT
ATAGTACAAATGCTGTGGCCGGAGCCTACCGTCTGTGGGCGTGGAGCTTGCAAAGCAACCGCATA
AGCTGTCTGTCCGACATCTGGGGCGCCGTCAGCGCGACGAACGCCGCGAGCCGCCGGTCGATGGT
GGGCTCGATCTCGTGCTCGATCTTGTCGCTCACCACGTTGAAAATGGCGTCCACCTCGTGGCACC
GCTGGCCCAACTCGTCGACTATGGCGTCGATGTCCTGCAGACGAGCAGTGGCCTCCAGGGCACGC
AACCTGTTGAGCGCCGCCTGGGCCTCAGGTGGCACCACCGGGTGGGGCGCAGGCACCGGGGTGGC
CCCGAGCGCGCCCACTGCACGCACCGCCTGGTCGCGGCGGGAGCTCGCAAGCGCCTCCCATTCGC
GGATCTCCGCTTCCAAACGGGCCACCTCGGCCTCGTAGTAGGCGA
Found at i:6385 original size:40 final size:39
Alignment explanation
Indices: 6341--6417 Score: 120
Period size: 40 Copynumber: 1.9 Consensus size: 39
6331 CAAAAACTGA
6341 CCAATACACCCAATAACCACCCAA-ACCACCACCAAAACTC
1 CCAATACACCCAATAACCACCCAATA--ACCACCAAAACTC
*
6381 CCAATACACCCAATAATCACCCAATAACCACCAAAAC
1 CCAATACACCCAATAACCACCCAATAACCACCAAAAC
6418 CACCAAAACC
Statistics
Matches: 35, Mismatches: 1, Indels: 3
0.90 0.03 0.08
Matches are distributed among these distances:
39 11 0.31
40 23 0.66
41 1 0.03
ACGTcount: A:0.47, C:0.44, G:0.00, T:0.09
Consensus pattern (39 bp):
CCAATACACCCAATAACCACCCAATAACCACCAAAACTC
Left flanking sequence: Indices 5841 -- 6340
CAAAGCAATTTTTGACGACAGGAAGCGCAGTGACACGACTGCCAAATGGGACGATCGTGGCTGGA
TCGGGAAAGGCACCACAGATCGTGGAGAAAGGCAGGTGTAGATGACACCCAACAGACAGAAACAA
GACAGACAAGACAGAAAGAAGACAGAAAACAAGACAGAAAACAGCGGTGGGTAGTGTTAACGCCG
TAAAACCGGTTTTAAGTCACCACCTGACCCAGAGTAACCAGAGTTTGGGCGTTTCCTCATGAAAC
AATGACGAGGCACTTCGAGTGCCCATCGTGCGTGGCGTGGTTCGCTCCCCGCCTCCAATTTACAC
GGCATTTCCAGCGCTAATGTTGGAGCGATGTCCACCTGATGTTTCATCCACGTCCTGCTCTCTTA
AAGTTTCGTCTGTTCAATTCATGGCTGCAAATATCTCAATACCACCCAAGAACATCCCAATACTG
CCCAAAAACCGCCCAAAAACCGCCCAAAAACCGCCCAAAAACTGA
Right flanking sequence: Indices 6418 -- 6917
CACCAAAACCACCTCTCACCATTAGCCTGAAATTAGCTTTTCTTAATATTACATATAGTACAAAT
GCTGTGGCCGGAGCCTACCGTCTGTGGGCGTGGAGCTTGCAAAGCAACCGCATAAGCTGTCTGTC
CGACATCTGGGGCGCCGTCAGCGCGACGAACGCCGCGAGCCGCCGGTCGATGGTGGGCTCGATCT
CGTGCTCGATCTTGTCGCTCACCACGTTGAAAATGGCGTCCACCTCGTGGCACCGCTGGCCCAAC
TCGTCGACTATGGCGTCGATGTCCTGCAGACGAGCAGTGGCCTCCAGGGCACGCAACCTGTTGAG
CGCCGCCTGGGCCTCAGGTGGCACCACCGGGTGGGGCGCAGGCACCGGGGTGGCCCCGAGCGCGC
CCACTGCACGCACCGCCTGGTCGCGGCGGGAGCTCGCAAGCGCCTCCCATTCGCGGATCTCCGCT
TCCAAACGGGCCACCTCGGCCTCGTAGTAGGCGATCATCTCGTAG
Found at i:7496 original size:12 final size:12
Alignment explanation
Indices: 7479--7520 Score: 59
Period size: 12 Copynumber: 3.5 Consensus size: 12
7469 TTGGGTCTGG
7479 GCCTTCGAGGCA
1 GCCTTCGAGGCA
*
7491 GTCTTCGAGGCA
1 GCCTTCGAGGCA
7503 GCCTTCGA-GCGA
1 GCCTTCGAGGC-A
7515 GCCTTC
1 GCCTTC
7521 AGACGGGTCT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
11 2 0.07
12 25 0.93
ACGTcount: A:0.14, C:0.33, G:0.31, T:0.21
Consensus pattern (12 bp):
GCCTTCGAGGCA
Left flanking sequence: Indices 6979 -- 7478
TGGGGCGGGTTTTTGTCGCGCCCAACTGGAGCCGGTGCTCCACGAGCCCCGTCTTGAGCTCCCGG
AGCACCGCCTTGGTCACCAGCTGCGCCGTCTGGTCGTCGGGGTCGCTCCGGGGCGCCTCGAGGTC
CAACTGGCGCACCTGCTGCTTGAGCAGCCACACCACCATCTGGGTGAGTTTCTCCTGGGGGCTGA
GGTTGGCGTCCAAGTGCTTGTGGAAGTCCTGGGGGAGCACGTCCGGGTGGAGGTCCAGGTCGAGC
CCGAGGGTGGAGAGGCGCTTGCCCCGGTTGTGGTACGACGAGCGCCGGCGGAGCCCCGGGTGGGG
GGTGGTGCCCGTGGTGGGCGGGTGTGCGGGAGGTGCGGAGGAAAGAGGGGCGGTGCCCGGTGCGG
GGTATGGTTGGCGCACGGGCAGTGAGAACGTCGCTGGGGGGAGGGAGGAGGCGGGGATCGCCTGG
GTCGGGGGGAGTGAGAGAACCTGGGAGGCATGGGGTTGGGTCTGG
Right flanking sequence: Indices 7521 -- 8020
AGACGGGTCTTCGAGGGAGCCTTGGTTACCTCCGCGGGAGCCTTGGTTGCCTCCGCGGGAGTCTT
CGAGACTGCTTTCGAAGCAGCTTTTGAGGGCTGCGACGATTGCGAAGGGGCCTGGGACGGAATCA
CCTGGGTCGGTGGGAGCGACTCGGAGAAGCTCTCGTCGGCCGGGGGGTAGTCGTAGTCGTCCATG
GGCTCGGGCGAGTACGGGGCCGCCTGGGGCGACGGAGGGGCACGAGGTGCACGCACCTCCTCGCG
GGGTTTGGCCGCCTCCCTCGGGGGCTCCGTCGCCTTCGCCTGGGCCCGCTTGGCGGCCTGGCTCC
GTTTCGACGGCGTCTTCAGCACCTTCAGCACCTTCCCCTTGGACACCACGTTCACCTCCCACTCC
TCCTCCGTCATCGAGTAGCTCTCGCTGGCGCCAGGCCCTGGCAGAAGCCGGAGCCTCGGGAGCAC
CGACCGCAACCGCAGGAGACTGCCGCCCGTTCTGGGGGCTGCTGG
Found at i:7561 original size:21 final size:21
Alignment explanation
Indices: 7535--7581 Score: 85
Period size: 21 Copynumber: 2.2 Consensus size: 21
7525 GGGTCTTCGA
7535 GGGAGCCTTGGTTACCTCCGC
1 GGGAGCCTTGGTTACCTCCGC
*
7556 GGGAGCCTTGGTTGCCTCCGC
1 GGGAGCCTTGGTTACCTCCGC
7577 GGGAG
1 GGGAG
7582 TCTTCGAGAC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.09, C:0.30, G:0.40, T:0.21
Consensus pattern (21 bp):
GGGAGCCTTGGTTACCTCCGC
Left flanking sequence: Indices 7035 -- 7534
AGCTCCCGGAGCACCGCCTTGGTCACCAGCTGCGCCGTCTGGTCGTCGGGGTCGCTCCGGGGCGC
CTCGAGGTCCAACTGGCGCACCTGCTGCTTGAGCAGCCACACCACCATCTGGGTGAGTTTCTCCT
GGGGGCTGAGGTTGGCGTCCAAGTGCTTGTGGAAGTCCTGGGGGAGCACGTCCGGGTGGAGGTCC
AGGTCGAGCCCGAGGGTGGAGAGGCGCTTGCCCCGGTTGTGGTACGACGAGCGCCGGCGGAGCCC
CGGGTGGGGGGTGGTGCCCGTGGTGGGCGGGTGTGCGGGAGGTGCGGAGGAAAGAGGGGCGGTGC
CCGGTGCGGGGTATGGTTGGCGCACGGGCAGTGAGAACGTCGCTGGGGGGAGGGAGGAGGCGGGG
ATCGCCTGGGTCGGGGGGAGTGAGAGAACCTGGGAGGCATGGGGTTGGGTCTGGGCCTTCGAGGC
AGTCTTCGAGGCAGCCTTCGAGCGAGCCTTCAGACGGGTCTTCGA
Right flanking sequence: Indices 7582 -- 8081
TCTTCGAGACTGCTTTCGAAGCAGCTTTTGAGGGCTGCGACGATTGCGAAGGGGCCTGGGACGGA
ATCACCTGGGTCGGTGGGAGCGACTCGGAGAAGCTCTCGTCGGCCGGGGGGTAGTCGTAGTCGTC
CATGGGCTCGGGCGAGTACGGGGCCGCCTGGGGCGACGGAGGGGCACGAGGTGCACGCACCTCCT
CGCGGGGTTTGGCCGCCTCCCTCGGGGGCTCCGTCGCCTTCGCCTGGGCCCGCTTGGCGGCCTGG
CTCCGTTTCGACGGCGTCTTCAGCACCTTCAGCACCTTCCCCTTGGACACCACGTTCACCTCCCA
CTCCTCCTCCGTCATCGAGTAGCTCTCGCTGGCGCCAGGCCCTGGCAGAAGCCGGAGCCTCGGGA
GCACCGACCGCAACCGCAGGAGACTGCCGCCCGTTCTGGGGGCTGCTGGCCGGGCGGGTGCCTGG
CCCGGTGTTGGTTTGAGTGTCGGTGCTTTGCGTGGTTTGGCACGG
Found at i:8125 original size:15 final size:15
Alignment explanation
Indices: 8107--8165 Score: 100
Period size: 15 Copynumber: 3.9 Consensus size: 15
8097 GGTGGTAATG
*
8107 GTGTGGGTGGTGCTT
1 GTGTAGGTGGTGCTT
8122 GTGTAGGTGGTGCTT
1 GTGTAGGTGGTGCTT
*
8137 GTGTAGGTGGTGCCT
1 GTGTAGGTGGTGCTT
8152 GTGTAGGTGGTGCT
1 GTGTAGGTGGTGCT
8166 CGTGGAGCTC
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 41 1.00
ACGTcount: A:0.05, C:0.08, G:0.49, T:0.37
Consensus pattern (15 bp):
GTGTAGGTGGTGCTT
Left flanking sequence: Indices 7607 -- 8106
TTTTGAGGGCTGCGACGATTGCGAAGGGGCCTGGGACGGAATCACCTGGGTCGGTGGGAGCGACT
CGGAGAAGCTCTCGTCGGCCGGGGGGTAGTCGTAGTCGTCCATGGGCTCGGGCGAGTACGGGGCC
GCCTGGGGCGACGGAGGGGCACGAGGTGCACGCACCTCCTCGCGGGGTTTGGCCGCCTCCCTCGG
GGGCTCCGTCGCCTTCGCCTGGGCCCGCTTGGCGGCCTGGCTCCGTTTCGACGGCGTCTTCAGCA
CCTTCAGCACCTTCCCCTTGGACACCACGTTCACCTCCCACTCCTCCTCCGTCATCGAGTAGCTC
TCGCTGGCGCCAGGCCCTGGCAGAAGCCGGAGCCTCGGGAGCACCGACCGCAACCGCAGGAGACT
GCCGCCCGTTCTGGGGGCTGCTGGCCGGGCGGGTGCCTGGCCCGGTGTTGGTTTGAGTGTCGGTG
CTTTGCGTGGTTTGGCACGGACCGGTGAAAGTGCGGGTGGTAATG
Right flanking sequence: Indices 8166 -- 8665
CGTGGAGCTCGGGGTGCTCGTGGTGCTCGTGTGGGTGCGGGTGCTGGCTGCACTTGTGTAGGTGC
TGGCGTGGGTATCTGTGCTTGTGTCGGTGCAGGTGCGGGTGCGGACACTTTGGGTGGTGCCTTTT
TGCGACGCTTCGGGGAAGGACCACTGTCAGCGGGCTCAGTGGGCTCGGTGAGCTCGGTGGGCACA
CCGGAAGCCGTCGTGTCTTGCGTCTGTGCTGGTGGCAACGGTTGCTTCCTCGGTCTACCGCGTTT
CTTCGGCTCCGTTGGTGGAACCGTGGATGGGAGCGGGTTTTTCCTCGGGCGTCCACGCTTTTTAG
GCGTGGGTGTGTCTGTGCTGGCACCGGTGGCCTTGTCTGCACCGGTGGCCTTATCTGCACTGGAC
TTGTCTGCACTGGTAGTTTTCTTCTCACTGGTGGCCTTCGCACTGGTCTTCTTTGGACTGGTCTT
CTTTGGACTGGTCTTCTTTGGACTGGCCTTCTTTGCACTGGCCTT
Found at i:8131 original size:30 final size:30
Alignment explanation
Indices: 8097--8162 Score: 87
Period size: 30 Copynumber: 2.2 Consensus size: 30
8087 TGAAAGTGCG
* *
8097 GGTGGTAATGGTGTGGGTGGTGCTTGTGTA
1 GGTGGTAATGGTGTAGGTGGTGCCTGTGTA
** *
8127 GGTGGTGCTTGTGTAGGTGGTGCCTGTGTA
1 GGTGGTAATGGTGTAGGTGGTGCCTGTGTA
8157 GGTGGT
1 GGTGGT
8163 GCTCGTGGAG
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.08, C:0.06, G:0.50, T:0.36
Consensus pattern (30 bp):
GGTGGTAATGGTGTAGGTGGTGCCTGTGTA
Left flanking sequence: Indices 7597 -- 8096
TCGAAGCAGCTTTTGAGGGCTGCGACGATTGCGAAGGGGCCTGGGACGGAATCACCTGGGTCGGT
GGGAGCGACTCGGAGAAGCTCTCGTCGGCCGGGGGGTAGTCGTAGTCGTCCATGGGCTCGGGCGA
GTACGGGGCCGCCTGGGGCGACGGAGGGGCACGAGGTGCACGCACCTCCTCGCGGGGTTTGGCCG
CCTCCCTCGGGGGCTCCGTCGCCTTCGCCTGGGCCCGCTTGGCGGCCTGGCTCCGTTTCGACGGC
GTCTTCAGCACCTTCAGCACCTTCCCCTTGGACACCACGTTCACCTCCCACTCCTCCTCCGTCAT
CGAGTAGCTCTCGCTGGCGCCAGGCCCTGGCAGAAGCCGGAGCCTCGGGAGCACCGACCGCAACC
GCAGGAGACTGCCGCCCGTTCTGGGGGCTGCTGGCCGGGCGGGTGCCTGGCCCGGTGTTGGTTTG
AGTGTCGGTGCTTTGCGTGGTTTGGCACGGACCGGTGAAAGTGCG
Right flanking sequence: Indices 8163 -- 8662
GCTCGTGGAGCTCGGGGTGCTCGTGGTGCTCGTGTGGGTGCGGGTGCTGGCTGCACTTGTGTAGG
TGCTGGCGTGGGTATCTGTGCTTGTGTCGGTGCAGGTGCGGGTGCGGACACTTTGGGTGGTGCCT
TTTTGCGACGCTTCGGGGAAGGACCACTGTCAGCGGGCTCAGTGGGCTCGGTGAGCTCGGTGGGC
ACACCGGAAGCCGTCGTGTCTTGCGTCTGTGCTGGTGGCAACGGTTGCTTCCTCGGTCTACCGCG
TTTCTTCGGCTCCGTTGGTGGAACCGTGGATGGGAGCGGGTTTTTCCTCGGGCGTCCACGCTTTT
TAGGCGTGGGTGTGTCTGTGCTGGCACCGGTGGCCTTGTCTGCACCGGTGGCCTTATCTGCACTG
GACTTGTCTGCACTGGTAGTTTTCTTCTCACTGGTGGCCTTCGCACTGGTCTTCTTTGGACTGGT
CTTCTTTGGACTGGTCTTCTTTGGACTGGCCTTCTTTGCACTGGC
Found at i:8175 original size:9 final size:9
Alignment explanation
Indices: 8158--8196 Score: 60
Period size: 9 Copynumber: 4.3 Consensus size: 9
8148 GCCTGTGTAG
8158 GTGGTGCTC
1 GTGGTGCTC
*
8167 GTGGAGCTC
1 GTGGTGCTC
*
8176 GGGGTGCTC
1 GTGGTGCTC
8185 GTGGTGCTC
1 GTGGTGCTC
8194 GTG
1 GTG
8197 TGGGTGCGGG
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.03, C:0.21, G:0.49, T:0.28
Consensus pattern (9 bp):
GTGGTGCTC
Left flanking sequence: Indices 7658 -- 8157
CGGTGGGAGCGACTCGGAGAAGCTCTCGTCGGCCGGGGGGTAGTCGTAGTCGTCCATGGGCTCGG
GCGAGTACGGGGCCGCCTGGGGCGACGGAGGGGCACGAGGTGCACGCACCTCCTCGCGGGGTTTG
GCCGCCTCCCTCGGGGGCTCCGTCGCCTTCGCCTGGGCCCGCTTGGCGGCCTGGCTCCGTTTCGA
CGGCGTCTTCAGCACCTTCAGCACCTTCCCCTTGGACACCACGTTCACCTCCCACTCCTCCTCCG
TCATCGAGTAGCTCTCGCTGGCGCCAGGCCCTGGCAGAAGCCGGAGCCTCGGGAGCACCGACCGC
AACCGCAGGAGACTGCCGCCCGTTCTGGGGGCTGCTGGCCGGGCGGGTGCCTGGCCCGGTGTTGG
TTTGAGTGTCGGTGCTTTGCGTGGTTTGGCACGGACCGGTGAAAGTGCGGGTGGTAATGGTGTGG
GTGGTGCTTGTGTAGGTGGTGCTTGTGTAGGTGGTGCCTGTGTAG
Right flanking sequence: Indices 8197 -- 8696
TGGGTGCGGGTGCTGGCTGCACTTGTGTAGGTGCTGGCGTGGGTATCTGTGCTTGTGTCGGTGCA
GGTGCGGGTGCGGACACTTTGGGTGGTGCCTTTTTGCGACGCTTCGGGGAAGGACCACTGTCAGC
GGGCTCAGTGGGCTCGGTGAGCTCGGTGGGCACACCGGAAGCCGTCGTGTCTTGCGTCTGTGCTG
GTGGCAACGGTTGCTTCCTCGGTCTACCGCGTTTCTTCGGCTCCGTTGGTGGAACCGTGGATGGG
AGCGGGTTTTTCCTCGGGCGTCCACGCTTTTTAGGCGTGGGTGTGTCTGTGCTGGCACCGGTGGC
CTTGTCTGCACCGGTGGCCTTATCTGCACTGGACTTGTCTGCACTGGTAGTTTTCTTCTCACTGG
TGGCCTTCGCACTGGTCTTCTTTGGACTGGTCTTCTTTGGACTGGTCTTCTTTGGACTGGCCTTC
TTTGCACTGGCCTTCTTTGCACTGGTAGCCCTAGGCTTCTTGGGC
Found at i:8534 original size:18 final size:18
Alignment explanation
Indices: 8511--8550 Score: 71
Period size: 18 Copynumber: 2.2 Consensus size: 18
8501 GTCTGTGCTG
*
8511 GCACCGGTGGCCTTGTCT
1 GCACCGGTGGCCTTATCT
8529 GCACCGGTGGCCTTATCT
1 GCACCGGTGGCCTTATCT
8547 GCAC
1 GCAC
8551 TGGACTTGTC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.10, C:0.35, G:0.30, T:0.25
Consensus pattern (18 bp):
GCACCGGTGGCCTTATCT
Left flanking sequence: Indices 8011 -- 8510
GGGCTGCTGGCCGGGCGGGTGCCTGGCCCGGTGTTGGTTTGAGTGTCGGTGCTTTGCGTGGTTTG
GCACGGACCGGTGAAAGTGCGGGTGGTAATGGTGTGGGTGGTGCTTGTGTAGGTGGTGCTTGTGT
AGGTGGTGCCTGTGTAGGTGGTGCTCGTGGAGCTCGGGGTGCTCGTGGTGCTCGTGTGGGTGCGG
GTGCTGGCTGCACTTGTGTAGGTGCTGGCGTGGGTATCTGTGCTTGTGTCGGTGCAGGTGCGGGT
GCGGACACTTTGGGTGGTGCCTTTTTGCGACGCTTCGGGGAAGGACCACTGTCAGCGGGCTCAGT
GGGCTCGGTGAGCTCGGTGGGCACACCGGAAGCCGTCGTGTCTTGCGTCTGTGCTGGTGGCAACG
GTTGCTTCCTCGGTCTACCGCGTTTCTTCGGCTCCGTTGGTGGAACCGTGGATGGGAGCGGGTTT
TTCCTCGGGCGTCCACGCTTTTTAGGCGTGGGTGTGTCTGTGCTG
Right flanking sequence: Indices 8551 -- 9050
TGGACTTGTCTGCACTGGTAGTTTTCTTCTCACTGGTGGCCTTCGCACTGGTCTTCTTTGGACTG
GTCTTCTTTGGACTGGTCTTCTTTGGACTGGCCTTCTTTGCACTGGCCTTCTTTGCACTGGTAGC
CCTAGGCTTCTTGGGCTTCTCGGCTGTCCCGCTCTCCTGGTTCGCCTTCACCTTCGGGGGTCTGC
CTCGGCCTCGCTTCGGTGTTTGGCCCGATGTGCCCGCGTTTTTGGTTGCACTCGGTGCTGTGCCT
CGTGCTGGGCTTGGTGCTGTGCTTTGCGCTGGTGCTGTGCCTTCCTCCGGTGCGGGAGGAGGGAG
CACCACCGCAGCGGTCAGCCCATGCGGCTGGTACTGGGCCAACGCGGCCTCAAGCGACTTGGGTG
CTCTCGGAGCCCGTCTGGACCGCCCATTAGTGGACAGGACTTGTGTGAGCATGAGCTCCCGTTGC
TGGCGTTGCCAGTCCCCGTCTATAGCTAAACTGGACCCCGGGGCA
Found at i:8615 original size:15 final size:15
Alignment explanation
Indices: 8597--8677 Score: 126
Period size: 15 Copynumber: 5.4 Consensus size: 15
8587 TGGCCTTCGC
8597 ACTGGTCTTCTTTGG
1 ACTGGTCTTCTTTGG
8612 ACTGGTCTTCTTTGG
1 ACTGGTCTTCTTTGG
8627 ACTGGTCTTCTTTGG
1 ACTGGTCTTCTTTGG
* *
8642 ACTGGCCTTCTTTGC
1 ACTGGTCTTCTTTGG
* *
8657 ACTGGCCTTCTTTGC
1 ACTGGTCTTCTTTGG
8672 ACTGGT
1 ACTGGT
8678 AGCCCTAGGC
Statistics
Matches: 63, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 63 1.00
ACGTcount: A:0.07, C:0.25, G:0.25, T:0.43
Consensus pattern (15 bp):
ACTGGTCTTCTTTGG
Left flanking sequence: Indices 8097 -- 8596
GGTGGTAATGGTGTGGGTGGTGCTTGTGTAGGTGGTGCTTGTGTAGGTGGTGCCTGTGTAGGTGG
TGCTCGTGGAGCTCGGGGTGCTCGTGGTGCTCGTGTGGGTGCGGGTGCTGGCTGCACTTGTGTAG
GTGCTGGCGTGGGTATCTGTGCTTGTGTCGGTGCAGGTGCGGGTGCGGACACTTTGGGTGGTGCC
TTTTTGCGACGCTTCGGGGAAGGACCACTGTCAGCGGGCTCAGTGGGCTCGGTGAGCTCGGTGGG
CACACCGGAAGCCGTCGTGTCTTGCGTCTGTGCTGGTGGCAACGGTTGCTTCCTCGGTCTACCGC
GTTTCTTCGGCTCCGTTGGTGGAACCGTGGATGGGAGCGGGTTTTTCCTCGGGCGTCCACGCTTT
TTAGGCGTGGGTGTGTCTGTGCTGGCACCGGTGGCCTTGTCTGCACCGGTGGCCTTATCTGCACT
GGACTTGTCTGCACTGGTAGTTTTCTTCTCACTGGTGGCCTTCGC
Right flanking sequence: Indices 8678 -- 9177
AGCCCTAGGCTTCTTGGGCTTCTCGGCTGTCCCGCTCTCCTGGTTCGCCTTCACCTTCGGGGGTC
TGCCTCGGCCTCGCTTCGGTGTTTGGCCCGATGTGCCCGCGTTTTTGGTTGCACTCGGTGCTGTG
CCTCGTGCTGGGCTTGGTGCTGTGCTTTGCGCTGGTGCTGTGCCTTCCTCCGGTGCGGGAGGAGG
GAGCACCACCGCAGCGGTCAGCCCATGCGGCTGGTACTGGGCCAACGCGGCCTCAAGCGACTTGG
GTGCTCTCGGAGCCCGTCTGGACCGCCCATTAGTGGACAGGACTTGTGTGAGCATGAGCTCCCGT
TGCTGGCGTTGCCAGTCCCCGTCTATAGCTAAACTGGACCCCGGGGCAACGGAGGTGCCGGCACC
TCCTGCGGCGGCGCGGGGAGTGCGGTCCGCGACCAGTCGCGGGGCCAGCACCGAGGCTGCGTGCG
CTAGTGCAGAGAGCCGTGAGCCCGTGGCAAGGGGCCCTCGTGTGG
Found at i:8616 original size:30 final size:30
Alignment explanation
Indices: 8582--8677 Score: 93
Period size: 30 Copynumber: 3.2 Consensus size: 30
8572 TTTTCTTCTC
*
8582 ACTGGTGGCCTTCGCACTGGTCTTCTTTGG
1 ACTGGTCGCCTTCGCACTGGTCTTCTTTGG
** * *
8612 ACTGGTCTTCTTTGGACTGGTCTTCTTTGG
1 ACTGGTCGCCTTCGCACTGGTCTTCTTTGG
* ** * * *
8642 ACTGGCCTTCTTTGCACTGGCCTTCTTTGC
1 ACTGGTCGCCTTCGCACTGGTCTTCTTTGG
8672 ACTGGT
1 ACTGGT
8678 AGCCCTAGGC
Statistics
Matches: 56, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 56 1.00
ACGTcount: A:0.07, C:0.26, G:0.26, T:0.41
Consensus pattern (30 bp):
ACTGGTCGCCTTCGCACTGGTCTTCTTTGG
Left flanking sequence: Indices 8082 -- 8581
ACCGGTGAAAGTGCGGGTGGTAATGGTGTGGGTGGTGCTTGTGTAGGTGGTGCTTGTGTAGGTGG
TGCCTGTGTAGGTGGTGCTCGTGGAGCTCGGGGTGCTCGTGGTGCTCGTGTGGGTGCGGGTGCTG
GCTGCACTTGTGTAGGTGCTGGCGTGGGTATCTGTGCTTGTGTCGGTGCAGGTGCGGGTGCGGAC
ACTTTGGGTGGTGCCTTTTTGCGACGCTTCGGGGAAGGACCACTGTCAGCGGGCTCAGTGGGCTC
GGTGAGCTCGGTGGGCACACCGGAAGCCGTCGTGTCTTGCGTCTGTGCTGGTGGCAACGGTTGCT
TCCTCGGTCTACCGCGTTTCTTCGGCTCCGTTGGTGGAACCGTGGATGGGAGCGGGTTTTTCCTC
GGGCGTCCACGCTTTTTAGGCGTGGGTGTGTCTGTGCTGGCACCGGTGGCCTTGTCTGCACCGGT
GGCCTTATCTGCACTGGACTTGTCTGCACTGGTAGTTTTCTTCTC
Right flanking sequence: Indices 8678 -- 9177
AGCCCTAGGCTTCTTGGGCTTCTCGGCTGTCCCGCTCTCCTGGTTCGCCTTCACCTTCGGGGGTC
TGCCTCGGCCTCGCTTCGGTGTTTGGCCCGATGTGCCCGCGTTTTTGGTTGCACTCGGTGCTGTG
CCTCGTGCTGGGCTTGGTGCTGTGCTTTGCGCTGGTGCTGTGCCTTCCTCCGGTGCGGGAGGAGG
GAGCACCACCGCAGCGGTCAGCCCATGCGGCTGGTACTGGGCCAACGCGGCCTCAAGCGACTTGG
GTGCTCTCGGAGCCCGTCTGGACCGCCCATTAGTGGACAGGACTTGTGTGAGCATGAGCTCCCGT
TGCTGGCGTTGCCAGTCCCCGTCTATAGCTAAACTGGACCCCGGGGCAACGGAGGTGCCGGCACC
TCCTGCGGCGGCGCGGGGAGTGCGGTCCGCGACCAGTCGCGGGGCCAGCACCGAGGCTGCGTGCG
CTAGTGCAGAGAGCCGTGAGCCCGTGGCAAGGGGCCCTCGTGTGG
Found at i:11135 original size:20 final size:20
Alignment explanation
Indices: 11086--11135 Score: 82
Period size: 20 Copynumber: 2.5 Consensus size: 20
11076 ATTTTTTAGT
*
11086 GGATACTCTGAATATTTAAC
1 GGATACTCTTAATATTTAAC
*
11106 GGATACTCTTAATTTTTAAC
1 GGATACTCTTAATATTTAAC
11126 GGATACTCTT
1 GGATACTCTT
11136 TCAATAATAC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.30, C:0.16, G:0.14, T:0.40
Consensus pattern (20 bp):
GGATACTCTTAATATTTAAC
Left flanking sequence: Indices 10586 -- 11085
TTTGGCGGAGTTGACGACAACCTCTACCTTCTTGGCACCAACGAGGTGGTGGTGTTTGCCATGGG
GACGTTCTTTACTGCCTACGCCAGCCCCCAGCGCCTCCTCGACGCTGCCACCACCCCCGCGGGTA
CGCTTGTCGTGCTCACCGCCCCTGACGCTTGGCAAATCGTCGAGCCGACGAAGAAGCATATGCCG
ACGCTCGGCAACGACACCGAGATTACCGATACGTTTGCCCATAGACGAGGCAGAGTGACAGCCGT
CTAGAATACCCGTGCTTACGCGAGGGCTGCTTGAAGCCGCCGTTATCCGTTTGAGGCGTCACTTT
GTAGCTCTATGTATGGCAAAGCTTGGCACGACTGCCTCATGTCGGCAGGAGCGAAGAGCGCGTCA
CGGCACTAATGGCAACACTAGCTAGTCACCCAAGGCCGCGAATCGGACTCTCTGCGAAGGTTGAC
CCGGTGGTAGTGATTTTTCATGTGAACAGGCTGTTATTTTTTAGT
Right flanking sequence: Indices 11136 -- 11635
TCAATAATACCCTCCACCTCGCGGGCCATCACCCGCAACCAATAGCAAAAAGGATGCTTTTGCGT
CACGACACACGATGAGCTAACATCTGTCGACAAATTCGACGATGGACTTCCGAGATGGGAATGGC
TGCGGTGTGCGAACCGTTTGGTGGCATTATGCGTGCGTCACAAGGCTGGCAGGCCACAGTGCCGT
AAGTACCTCCCAAATTGGCCCACTAATTTTCCTTTTGGGATTCTCTACGTGCTATCAGGTCGTAA
ATCCGCCCAGGATCTTTGTCTGCCGGTGTTGGCTGATCGTGTTGTCAATTTCAGCTGCCCAATCG
GGAGCGTGGGCTCTGAACTGGGGAATGGACTCATACCGCGGGCAGGCGGGACCACCAGCACAACC
ACCACCACCGGGTCCCCGTGCGAGTGTGTTGCCATAGAAAGCGATTTTTGCTAGCATCGATCGCT
AGTGTCGTATCTCGGGACTATCTTTGTTGTATTTCGATATTATTG
Found at i:15911 original size:21 final size:21
Alignment explanation
Indices: 15882--15935 Score: 72
Period size: 21 Copynumber: 2.6 Consensus size: 21
15872 GCTTCGCAAT
* **
15882 GCTTAATACGCAGCTAGCACC
1 GCTTGATACGCAAATAGCACC
15903 GCTTGATACGCAAATAGCACC
1 GCTTGATACGCAAATAGCACC
*
15924 GTTTGATACGCA
1 GCTTGATACGCA
15936 CCCCGACCAC
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (21 bp):
GCTTGATACGCAAATAGCACC
Left flanking sequence: Indices 15382 -- 15881
ATAATCAGACAATGGGTTCCGAAGATTTAGATCTGGACGGATTTATGAGTGGCACAAACAGAGCT
GGGGTATTTTGAGAGTCTAGCTCCGTCTATGGTTTCTCCCGTTGGCAGACGTGTCGTAGCGTCGT
TGTACCGATTTTTAATCCCATTCGAATCCGTCACATGATTATCAAAGGTACATCCATACATCTGG
CTTGATGGGCCAATTGAGCCGAAGATGACCGACATATACCCCTGGAAACAACACTAAACGAGGCT
TGGGAGTTCCCCTTACGGATAGGACGGACGCCCGCAGGTGGCATCGTCTACGAGGCGTCAAAGAG
TATGCTTCTCTTGAAAAGTAGTCTTTTCTTCAAACCAAATAGTCCATTAAATCGCTCCTAAAGCT
CCATTCTCGCCACCCCAAGCAGGAATGCTTCACGCTAAGCGGCATCAGACGCCATGGCCCGCCCA
CAATTCTCGTGTGAGCTCTGACGCCAATTAGCACCGCTTCGCAAT
Right flanking sequence: Indices 15936 -- 16435
CCCCGACCACTGCAAACACGCTGTGATACCCCTCTTCTCTGCCCCTGTTCTCTGAGACTCCTGTT
CTCTGACTCTTTTCTGAGACTCCTGTTCTTTTACTCCTGCGCTCTACCACCCTGTTCTGAAACCT
CTGTTCTCTGACACCACTGTTCTCAACCACCACTATATTCTGATCCCTGTTCTCTACCCCTCTCT
GATACCCTACTCTCTCCCCTGTTCTGACTCCCTACTCTCTCCCCTGTTCTCTACTGCTCTCTACC
ACCCGTGTTCTCCTGCTCTCTATTCATTATGCATTGACTATGTACAAGCTACTTCTTCTTCTTCG
ACGGGGCCTCGGTCTTCTTCTTGGGGGCACCCTTGTTGCGCTTCTTGCGGTCCGCCACCATCTTC
AACCGGTACTGCTCCTTCGGGTCGGTCAACTTGAGCTCGGGGAACCACTCCTTAAAATCGCGGAA
CGTCGGCATCAGGTCGTTGACCCCGTAGTAGTTGACGACCTCGGG
Found at i:16000 original size:16 final size:16
Alignment explanation
Indices: 15979--16029 Score: 67
Period size: 16 Copynumber: 3.5 Consensus size: 16
15969 CTTCTCTGCC
15979 CCTGTTCTCTGAGACT
1 CCTGTTCTCTGAGACT
15995 CCTGTTCTCT--GACT
1 CCTGTTCTCTGAGACT
16009 -CT-TT-TCTGAGACT
1 CCTGTTCTCTGAGACT
16022 CCTGTTCT
1 CCTGTTCT
16030 TTTACTCCTG
Statistics
Matches: 30, Mismatches: 0, Indels: 10
0.75 0.00 0.25
Matches are distributed among these distances:
11 3 0.10
12 2 0.07
13 6 0.20
14 6 0.20
15 2 0.07
16 11 0.37
ACGTcount: A:0.10, C:0.31, G:0.16, T:0.43
Consensus pattern (16 bp):
CCTGTTCTCTGAGACT
Left flanking sequence: Indices 15479 -- 15978
TTTCTCCCGTTGGCAGACGTGTCGTAGCGTCGTTGTACCGATTTTTAATCCCATTCGAATCCGTC
ACATGATTATCAAAGGTACATCCATACATCTGGCTTGATGGGCCAATTGAGCCGAAGATGACCGA
CATATACCCCTGGAAACAACACTAAACGAGGCTTGGGAGTTCCCCTTACGGATAGGACGGACGCC
CGCAGGTGGCATCGTCTACGAGGCGTCAAAGAGTATGCTTCTCTTGAAAAGTAGTCTTTTCTTCA
AACCAAATAGTCCATTAAATCGCTCCTAAAGCTCCATTCTCGCCACCCCAAGCAGGAATGCTTCA
CGCTAAGCGGCATCAGACGCCATGGCCCGCCCACAATTCTCGTGTGAGCTCTGACGCCAATTAGC
ACCGCTTCGCAATGCTTAATACGCAGCTAGCACCGCTTGATACGCAAATAGCACCGTTTGATACG
CACCCCGACCACTGCAAACACGCTGTGATACCCCTCTTCTCTGCC
Right flanking sequence: Indices 16030 -- 16529
TTTACTCCTGCGCTCTACCACCCTGTTCTGAAACCTCTGTTCTCTGACACCACTGTTCTCAACCA
CCACTATATTCTGATCCCTGTTCTCTACCCCTCTCTGATACCCTACTCTCTCCCCTGTTCTGACT
CCCTACTCTCTCCCCTGTTCTCTACTGCTCTCTACCACCCGTGTTCTCCTGCTCTCTATTCATTA
TGCATTGACTATGTACAAGCTACTTCTTCTTCTTCGACGGGGCCTCGGTCTTCTTCTTGGGGGCA
CCCTTGTTGCGCTTCTTGCGGTCCGCCACCATCTTCAACCGGTACTGCTCCTTCGGGTCGGTCAA
CTTGAGCTCGGGGAACCACTCCTTAAAATCGCGGAACGTCGGCATCAGGTCGTTGACCCCGTAGT
AGTTGACGACCTCGGGCCCCTTGAGGGGCGCACGGAGGATCTTGGCCCCATTCCGCGCACACGAC
GGGTTCCAGGTGTGGCCGAAGATCTCCGCCAGCGCCTTTTTGACC
Found at i:16085 original size:16 final size:16
Alignment explanation
Indices: 16056--16089 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
16046 ACCACCCTGT
*
16056 TCTGAAACCTCTGTTC
1 TCTGAAACCACTGTTC
*
16072 TCTGACACCACTGTTC
1 TCTGAAACCACTGTTC
16088 TC
1 TC
16090 AACCACCACT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.18, C:0.35, G:0.12, T:0.35
Consensus pattern (16 bp):
TCTGAAACCACTGTTC
Left flanking sequence: Indices 15556 -- 16055
AAGGTACATCCATACATCTGGCTTGATGGGCCAATTGAGCCGAAGATGACCGACATATACCCCTG
GAAACAACACTAAACGAGGCTTGGGAGTTCCCCTTACGGATAGGACGGACGCCCGCAGGTGGCAT
CGTCTACGAGGCGTCAAAGAGTATGCTTCTCTTGAAAAGTAGTCTTTTCTTCAAACCAAATAGTC
CATTAAATCGCTCCTAAAGCTCCATTCTCGCCACCCCAAGCAGGAATGCTTCACGCTAAGCGGCA
TCAGACGCCATGGCCCGCCCACAATTCTCGTGTGAGCTCTGACGCCAATTAGCACCGCTTCGCAA
TGCTTAATACGCAGCTAGCACCGCTTGATACGCAAATAGCACCGTTTGATACGCACCCCGACCAC
TGCAAACACGCTGTGATACCCCTCTTCTCTGCCCCTGTTCTCTGAGACTCCTGTTCTCTGACTCT
TTTCTGAGACTCCTGTTCTTTTACTCCTGCGCTCTACCACCCTGT
Right flanking sequence: Indices 16090 -- 16589
AACCACCACTATATTCTGATCCCTGTTCTCTACCCCTCTCTGATACCCTACTCTCTCCCCTGTTC
TGACTCCCTACTCTCTCCCCTGTTCTCTACTGCTCTCTACCACCCGTGTTCTCCTGCTCTCTATT
CATTATGCATTGACTATGTACAAGCTACTTCTTCTTCTTCGACGGGGCCTCGGTCTTCTTCTTGG
GGGCACCCTTGTTGCGCTTCTTGCGGTCCGCCACCATCTTCAACCGGTACTGCTCCTTCGGGTCG
GTCAACTTGAGCTCGGGGAACCACTCCTTAAAATCGCGGAACGTCGGCATCAGGTCGTTGACCCC
GTAGTAGTTGACGACCTCGGGCCCCTTGAGGGGCGCACGGAGGATCTTGGCCCCATTCCGCGCAC
ACGACGGGTTCCAGGTGTGGCCGAAGATCTCCGCCAGCGCCTTTTTGACCTGGTTGAGCCGCTCC
TGGGTCGGTAATCTCTTGAGCATGGCAGGTGACGACTGGTCCGAT
Found at i:16144 original size:25 final size:25
Alignment explanation
Indices: 16116--16176 Score: 81
Period size: 25 Copynumber: 2.4 Consensus size: 25
16106 TGATCCCTGT
16116 TCTCTACCCCT-CTCTGA-TACCCTAC
1 TCTCT-CCCCTGCTCTGACT-CCCTAC
*
16141 TCTCTCCCCTGTTCTGACTCCCTAC
1 TCTCTCCCCTGCTCTGACTCCCTAC
16166 TCTCTCCCCTG
1 TCTCTCCCCTG
16177 TTCTCTACTG
Statistics
Matches: 33, Mismatches: 1, Indels: 4
0.87 0.03 0.11
Matches are distributed among these distances:
24 5 0.15
25 27 0.82
26 1 0.03
ACGTcount: A:0.10, C:0.49, G:0.07, T:0.34
Consensus pattern (25 bp):
TCTCTCCCCTGCTCTGACTCCCTAC
Left flanking sequence: Indices 15616 -- 16115
CCCTGGAAACAACACTAAACGAGGCTTGGGAGTTCCCCTTACGGATAGGACGGACGCCCGCAGGT
GGCATCGTCTACGAGGCGTCAAAGAGTATGCTTCTCTTGAAAAGTAGTCTTTTCTTCAAACCAAA
TAGTCCATTAAATCGCTCCTAAAGCTCCATTCTCGCCACCCCAAGCAGGAATGCTTCACGCTAAG
CGGCATCAGACGCCATGGCCCGCCCACAATTCTCGTGTGAGCTCTGACGCCAATTAGCACCGCTT
CGCAATGCTTAATACGCAGCTAGCACCGCTTGATACGCAAATAGCACCGTTTGATACGCACCCCG
ACCACTGCAAACACGCTGTGATACCCCTCTTCTCTGCCCCTGTTCTCTGAGACTCCTGTTCTCTG
ACTCTTTTCTGAGACTCCTGTTCTTTTACTCCTGCGCTCTACCACCCTGTTCTGAAACCTCTGTT
CTCTGACACCACTGTTCTCAACCACCACTATATTCTGATCCCTGT
Right flanking sequence: Indices 16177 -- 16676
TTCTCTACTGCTCTCTACCACCCGTGTTCTCCTGCTCTCTATTCATTATGCATTGACTATGTACA
AGCTACTTCTTCTTCTTCGACGGGGCCTCGGTCTTCTTCTTGGGGGCACCCTTGTTGCGCTTCTT
GCGGTCCGCCACCATCTTCAACCGGTACTGCTCCTTCGGGTCGGTCAACTTGAGCTCGGGGAACC
ACTCCTTAAAATCGCGGAACGTCGGCATCAGGTCGTTGACCCCGTAGTAGTTGACGACCTCGGGC
CCCTTGAGGGGCGCACGGAGGATCTTGGCCCCATTCCGCGCACACGACGGGTTCCAGGTGTGGCC
GAAGATCTCCGCCAGCGCCTTTTTGACCTGGTTGAGCCGCTCCTGGGTCGGTAATCTCTTGAGCA
TGGCAGGTGACGACTGGTCCGATCGGGTGAAATTTTTCAGTCGCACTGCTGCACGAGGGTATGAA
GGAAGGGGAAGGGAAAGGGAAAGGAGAAGGGAAAGGAGAAGGCGA
Found at i:16655 original size:12 final size:13
Alignment explanation
Indices: 16633--16673 Score: 52
Period size: 12 Copynumber: 3.4 Consensus size: 13
16623 GGGTATGAAG
*
16633 GAAGGGGAAGGGA
1 GAAGGGAAAGGGA
16646 -AAGGGAAA-GGA
1 GAAGGGAAAGGGA
16657 GAAGGGAAA-GGA
1 GAAGGGAAAGGGA
16669 GAAGG
1 GAAGG
16674 CGACGGGGTG
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
11 3 0.12
12 23 0.88
ACGTcount: A:0.46, C:0.00, G:0.54, T:0.00
Consensus pattern (13 bp):
GAAGGGAAAGGGA
Left flanking sequence: Indices 16133 -- 16632
TACCCTACTCTCTCCCCTGTTCTGACTCCCTACTCTCTCCCCTGTTCTCTACTGCTCTCTACCAC
CCGTGTTCTCCTGCTCTCTATTCATTATGCATTGACTATGTACAAGCTACTTCTTCTTCTTCGAC
GGGGCCTCGGTCTTCTTCTTGGGGGCACCCTTGTTGCGCTTCTTGCGGTCCGCCACCATCTTCAA
CCGGTACTGCTCCTTCGGGTCGGTCAACTTGAGCTCGGGGAACCACTCCTTAAAATCGCGGAACG
TCGGCATCAGGTCGTTGACCCCGTAGTAGTTGACGACCTCGGGCCCCTTGAGGGGCGCACGGAGG
ATCTTGGCCCCATTCCGCGCACACGACGGGTTCCAGGTGTGGCCGAAGATCTCCGCCAGCGCCTT
TTTGACCTGGTTGAGCCGCTCCTGGGTCGGTAATCTCTTGAGCATGGCAGGTGACGACTGGTCCG
ATCGGGTGAAATTTTTCAGTCGCACTGCTGCACGAGGGTATGAAG
Right flanking sequence: Indices 16674 -- 17173
CGACGGGGTGCGGAAATGAAGGGGAAGGCGGGAAATGGGCCGGGTGGTGCAGGAGGTGGTGGCTG
GTGGGTGGGAGGCGAGGGTGGTGGCGTAGGGGTGATTAAGGGGTGGTAAGGGGTGGATAATGAGA
AAGAGAAGAGAGAAAAATGTGGAAGTGAGTGGTGGTGACTACGGTGGTTTGGAGGTTATTAATTT
GGTAGTGGCGACCCACAAGGCTCGTAGAATGCTGTCTGGTGGTTTTGTTTGCCATTTGTCTAAGA
AAGATGTAAAAGTTGAGGTCTGATGAGAGTCTTCGTTCGAGTCAACTGTGAGACGAATATCCTAT
GACGTCATGGCGGTTACCATGAGCAATACACTGGAGCCAACTGAGTAAGCTCGCAGGTCCACTGA
TTAGGTCCACTGATTAGTCCACTGATTAGTCCACTGAGTAACTAAGGAGTCCCTTCACAACGCTC
GCGCAGACTCTTGCGTCTTCCGACATTTACCCAACATCACCGGTC
Found at i:16673 original size:18 final size:17
Alignment explanation
Indices: 16632--16673 Score: 57
Period size: 18 Copynumber: 2.4 Consensus size: 17
16622 AGGGTATGAA
*
16632 GGAAGGGGAAGGGAAAG
1 GGAAGGAGAAGGGAAAG
16649 GGAAAGGAGAAGGGAAAG
1 GG-AAGGAGAAGGGAAAG
16667 GAGAAGG
1 G-GAAGG
16674 CGACGGGGTG
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
17 2 0.09
18 19 0.86
19 1 0.05
ACGTcount: A:0.45, C:0.00, G:0.55, T:0.00
Consensus pattern (17 bp):
GGAAGGAGAAGGGAAAG
Left flanking sequence: Indices 16132 -- 16631
ATACCCTACTCTCTCCCCTGTTCTGACTCCCTACTCTCTCCCCTGTTCTCTACTGCTCTCTACCA
CCCGTGTTCTCCTGCTCTCTATTCATTATGCATTGACTATGTACAAGCTACTTCTTCTTCTTCGA
CGGGGCCTCGGTCTTCTTCTTGGGGGCACCCTTGTTGCGCTTCTTGCGGTCCGCCACCATCTTCA
ACCGGTACTGCTCCTTCGGGTCGGTCAACTTGAGCTCGGGGAACCACTCCTTAAAATCGCGGAAC
GTCGGCATCAGGTCGTTGACCCCGTAGTAGTTGACGACCTCGGGCCCCTTGAGGGGCGCACGGAG
GATCTTGGCCCCATTCCGCGCACACGACGGGTTCCAGGTGTGGCCGAAGATCTCCGCCAGCGCCT
TTTTGACCTGGTTGAGCCGCTCCTGGGTCGGTAATCTCTTGAGCATGGCAGGTGACGACTGGTCC
GATCGGGTGAAATTTTTCAGTCGCACTGCTGCACGAGGGTATGAA
Right flanking sequence: Indices 16674 -- 17173
CGACGGGGTGCGGAAATGAAGGGGAAGGCGGGAAATGGGCCGGGTGGTGCAGGAGGTGGTGGCTG
GTGGGTGGGAGGCGAGGGTGGTGGCGTAGGGGTGATTAAGGGGTGGTAAGGGGTGGATAATGAGA
AAGAGAAGAGAGAAAAATGTGGAAGTGAGTGGTGGTGACTACGGTGGTTTGGAGGTTATTAATTT
GGTAGTGGCGACCCACAAGGCTCGTAGAATGCTGTCTGGTGGTTTTGTTTGCCATTTGTCTAAGA
AAGATGTAAAAGTTGAGGTCTGATGAGAGTCTTCGTTCGAGTCAACTGTGAGACGAATATCCTAT
GACGTCATGGCGGTTACCATGAGCAATACACTGGAGCCAACTGAGTAAGCTCGCAGGTCCACTGA
TTAGGTCCACTGATTAGTCCACTGATTAGTCCACTGAGTAACTAAGGAGTCCCTTCACAACGCTC
GCGCAGACTCTTGCGTCTTCCGACATTTACCCAACATCACCGGTC
Found at i:17085 original size:12 final size:12
Alignment explanation
Indices: 17055--17100 Score: 83
Period size: 12 Copynumber: 3.8 Consensus size: 12
17045 AAGCTCGCAG
17055 GTCCACTGATTA
1 GTCCACTGATTA
17067 GGTCCACTGATTA
1 -GTCCACTGATTA
17080 GTCCACTGATTA
1 GTCCACTGATTA
17092 GTCCACTGA
1 GTCCACTGA
17101 GTAACTAAGG
Statistics
Matches: 33, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
12 21 0.64
13 12 0.36
ACGTcount: A:0.24, C:0.26, G:0.20, T:0.30
Consensus pattern (12 bp):
GTCCACTGATTA
Left flanking sequence: Indices 16555 -- 17054
ATCTCTTGAGCATGGCAGGTGACGACTGGTCCGATCGGGTGAAATTTTTCAGTCGCACTGCTGCA
CGAGGGTATGAAGGAAGGGGAAGGGAAAGGGAAAGGAGAAGGGAAAGGAGAAGGCGACGGGGTGC
GGAAATGAAGGGGAAGGCGGGAAATGGGCCGGGTGGTGCAGGAGGTGGTGGCTGGTGGGTGGGAG
GCGAGGGTGGTGGCGTAGGGGTGATTAAGGGGTGGTAAGGGGTGGATAATGAGAAAGAGAAGAGA
GAAAAATGTGGAAGTGAGTGGTGGTGACTACGGTGGTTTGGAGGTTATTAATTTGGTAGTGGCGA
CCCACAAGGCTCGTAGAATGCTGTCTGGTGGTTTTGTTTGCCATTTGTCTAAGAAAGATGTAAAA
GTTGAGGTCTGATGAGAGTCTTCGTTCGAGTCAACTGTGAGACGAATATCCTATGACGTCATGGC
GGTTACCATGAGCAATACACTGGAGCCAACTGAGTAAGCTCGCAG
Right flanking sequence: Indices 17101 -- 17600
GTAACTAAGGAGTCCCTTCACAACGCTCGCGCAGACTCTTGCGTCTTCCGACATTTACCCAACAT
CACCGGTCCGTTCATAACCGTAGTGTCAACATGCGAAAGAATATAAGAATAAACTCCAGGCATTC
TCAGACACTCTGTGTGCACGATTGTGTCAATGGTACGCTGAATGCTGGCTCGGTGAATATGTATC
TAGCTCAGTAAATACTAGCTCGTGAATACCAGCTCAGTGAATACTAACTCAGTGAATATTACCTC
ATTTCTGATTACTAGCTCAGTGTTGAATATTAGCTATTGCTAAATACTACCTCAGTGCTAATTAC
CTACTAAATAGCTATTGCCTCTGAACAAGTCACACCCGTTTAGACTGTCTCCACCATTATAATCA
CATATAGGGTCTTAAACGGGTCTCATTCGGGTCTACGGGTCTTAAACGCACTCAACACAATACCA
CTCAAAACGCCCCTCGACGCTTCTAGAACACCTCCTAACCCCTTT
Found at i:17329 original size:14 final size:15
Alignment explanation
Indices: 17295--17353 Score: 84
Period size: 15 Copynumber: 4.0 Consensus size: 15
17285 GAATATGTAT
*
17295 CTAGCTCAGTAAATA
1 CTAGCTCAGTGAATA
17310 CTAGCTC-GTGAATA
1 CTAGCTCAGTGAATA
*
17324 CCAGCTCAGTGAATA
1 CTAGCTCAGTGAATA
*
17339 CTAACTCAGTGAATA
1 CTAGCTCAGTGAATA
17354 TTACCTCATT
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
14 12 0.31
15 27 0.69
ACGTcount: A:0.36, C:0.22, G:0.17, T:0.25
Consensus pattern (15 bp):
CTAGCTCAGTGAATA
Left flanking sequence: Indices 16795 -- 17294
ATAATGAGAAAGAGAAGAGAGAAAAATGTGGAAGTGAGTGGTGGTGACTACGGTGGTTTGGAGGT
TATTAATTTGGTAGTGGCGACCCACAAGGCTCGTAGAATGCTGTCTGGTGGTTTTGTTTGCCATT
TGTCTAAGAAAGATGTAAAAGTTGAGGTCTGATGAGAGTCTTCGTTCGAGTCAACTGTGAGACGA
ATATCCTATGACGTCATGGCGGTTACCATGAGCAATACACTGGAGCCAACTGAGTAAGCTCGCAG
GTCCACTGATTAGGTCCACTGATTAGTCCACTGATTAGTCCACTGAGTAACTAAGGAGTCCCTTC
ACAACGCTCGCGCAGACTCTTGCGTCTTCCGACATTTACCCAACATCACCGGTCCGTTCATAACC
GTAGTGTCAACATGCGAAAGAATATAAGAATAAACTCCAGGCATTCTCAGACACTCTGTGTGCAC
GATTGTGTCAATGGTACGCTGAATGCTGGCTCGGTGAATATGTAT
Right flanking sequence: Indices 17354 -- 17853
TTACCTCATTTCTGATTACTAGCTCAGTGTTGAATATTAGCTATTGCTAAATACTACCTCAGTGC
TAATTACCTACTAAATAGCTATTGCCTCTGAACAAGTCACACCCGTTTAGACTGTCTCCACCATT
ATAATCACATATAGGGTCTTAAACGGGTCTCATTCGGGTCTACGGGTCTTAAACGCACTCAACAC
AATACCACTCAAAACGCCCCTCGACGCTTCTAGAACACCTCCTAACCCCTTTGCGTCCACCCGTT
TCTTTCCCCGCTGTACCTTCTCCCCCCACCGCCACTATGTTACCACCCACCTAGTAACCAGGTAG
CAGAAAAACCCCACCCACTAGCTCACTCCAGCCACTCCACTCACTCCACTGACTCCACTGGCCAG
CCACACCCCACACCCCCACTTACTGCGCCCCACCGTCACGCTGAGCCCGCGCCTGACCTGCCAAG
CCCTGGCTGAGCCGCAAGCCATGGCCCCATTGGTGATCATGGTTA
Found at i:17339 original size:29 final size:30
Alignment explanation
Indices: 17297--17353 Score: 89
Period size: 29 Copynumber: 1.9 Consensus size: 30
17287 ATATGTATCT
*
17297 AGCTCAGTAAATACTAGCTC-GTGAATACC
1 AGCTCAGTAAATACTAACTCAGTGAATACC
*
17326 AGCTCAGTGAATACTAACTCAGTGAATA
1 AGCTCAGTAAATACTAACTCAGTGAATA
17354 TTACCTCATT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
29 18 0.72
30 7 0.28
ACGTcount: A:0.37, C:0.21, G:0.18, T:0.25
Consensus pattern (30 bp):
AGCTCAGTAAATACTAACTCAGTGAATACC
Left flanking sequence: Indices 16797 -- 17296
AATGAGAAAGAGAAGAGAGAAAAATGTGGAAGTGAGTGGTGGTGACTACGGTGGTTTGGAGGTTA
TTAATTTGGTAGTGGCGACCCACAAGGCTCGTAGAATGCTGTCTGGTGGTTTTGTTTGCCATTTG
TCTAAGAAAGATGTAAAAGTTGAGGTCTGATGAGAGTCTTCGTTCGAGTCAACTGTGAGACGAAT
ATCCTATGACGTCATGGCGGTTACCATGAGCAATACACTGGAGCCAACTGAGTAAGCTCGCAGGT
CCACTGATTAGGTCCACTGATTAGTCCACTGATTAGTCCACTGAGTAACTAAGGAGTCCCTTCAC
AACGCTCGCGCAGACTCTTGCGTCTTCCGACATTTACCCAACATCACCGGTCCGTTCATAACCGT
AGTGTCAACATGCGAAAGAATATAAGAATAAACTCCAGGCATTCTCAGACACTCTGTGTGCACGA
TTGTGTCAATGGTACGCTGAATGCTGGCTCGGTGAATATGTATCT
Right flanking sequence: Indices 17354 -- 17853
TTACCTCATTTCTGATTACTAGCTCAGTGTTGAATATTAGCTATTGCTAAATACTACCTCAGTGC
TAATTACCTACTAAATAGCTATTGCCTCTGAACAAGTCACACCCGTTTAGACTGTCTCCACCATT
ATAATCACATATAGGGTCTTAAACGGGTCTCATTCGGGTCTACGGGTCTTAAACGCACTCAACAC
AATACCACTCAAAACGCCCCTCGACGCTTCTAGAACACCTCCTAACCCCTTTGCGTCCACCCGTT
TCTTTCCCCGCTGTACCTTCTCCCCCCACCGCCACTATGTTACCACCCACCTAGTAACCAGGTAG
CAGAAAAACCCCACCCACTAGCTCACTCCAGCCACTCCACTCACTCCACTGACTCCACTGGCCAG
CCACACCCCACACCCCCACTTACTGCGCCCCACCGTCACGCTGAGCCCGCGCCTGACCTGCCAAG
CCCTGGCTGAGCCGCAAGCCATGGCCCCATTGGTGATCATGGTTA
Found at i:17716 original size:9 final size:9
Alignment explanation
Indices: 17700--17737 Score: 51
Period size: 9 Copynumber: 4.2 Consensus size: 9
17690 CACCCACTAG
17700 CTCACTCCA
1 CTCACTCCA
17709 GC-CACTCCA
1 -CTCACTCCA
17718 CTCACTCCA
1 CTCACTCCA
*
17727 CTGACTCCA
1 CTCACTCCA
17736 CT
1 CT
17738 GGCCAGCCAC
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
8 1 0.04
9 24 0.92
10 1 0.04
ACGTcount: A:0.21, C:0.53, G:0.05, T:0.21
Consensus pattern (9 bp):
CTCACTCCA
Left flanking sequence: Indices 17200 -- 17699
GAAAGAATATAAGAATAAACTCCAGGCATTCTCAGACACTCTGTGTGCACGATTGTGTCAATGGT
ACGCTGAATGCTGGCTCGGTGAATATGTATCTAGCTCAGTAAATACTAGCTCGTGAATACCAGCT
CAGTGAATACTAACTCAGTGAATATTACCTCATTTCTGATTACTAGCTCAGTGTTGAATATTAGC
TATTGCTAAATACTACCTCAGTGCTAATTACCTACTAAATAGCTATTGCCTCTGAACAAGTCACA
CCCGTTTAGACTGTCTCCACCATTATAATCACATATAGGGTCTTAAACGGGTCTCATTCGGGTCT
ACGGGTCTTAAACGCACTCAACACAATACCACTCAAAACGCCCCTCGACGCTTCTAGAACACCTC
CTAACCCCTTTGCGTCCACCCGTTTCTTTCCCCGCTGTACCTTCTCCCCCCACCGCCACTATGTT
ACCACCCACCTAGTAACCAGGTAGCAGAAAAACCCCACCCACTAG
Right flanking sequence: Indices 17738 -- 18237
GGCCAGCCACACCCCACACCCCCACTTACTGCGCCCCACCGTCACGCTGAGCCCGCGCCTGACCT
GCCAAGCCCTGGCTGAGCCGCAAGCCATGGCCCCATTGGTGATCATGGTTACGGAGCCCTGGCCA
CACAATCAGTGACAATGGTAACCGAAGCCAGGCAACGGCAAGAGAAACGGGCCTGGGGCGCCGTC
TTCCGTCTATAGAAACTGGTTTCTACGCAGCCACCGAGCCCCTTTTCTCCCAAACACCCCCATTG
CTCAAGCAGCCTCCCCTCACCCATATGCACCATGAGCTCAGCCTCAGCAGAGCCATCTTCAGGCC
TGGCTCTCGCCACACCAAACGGGAATCACCACTACGCAAAGAAAACACGCTCTAAACTGTAGGCA
AACCGCTCCACACATATCTAGTAACCACGTACCACCACCCCTACCCTTCTCCCTCCTCCCCTCCC
CTCCCTCAATTTCTCCTGCTTCCTCCTCCCTCCCCCCACGTTCAG
Found at i:18588 original size:12 final size:12
Alignment explanation
Indices: 18566--18614 Score: 71
Period size: 12 Copynumber: 4.1 Consensus size: 12
18556 CCTCCAGCCA
18566 CCAGGGCACCTC
1 CCAGGGCACCTC
* *
18578 TCAGGGTACCTC
1 CCAGGGCACCTC
*
18590 CCAAGGCACCTC
1 CCAGGGCACCTC
18602 CCAGGGCACCTC
1 CCAGGGCACCTC
18614 C
1 C
18615 AGCCACCACG
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
12 31 1.00
ACGTcount: A:0.18, C:0.47, G:0.22, T:0.12
Consensus pattern (12 bp):
CCAGGGCACCTC
Left flanking sequence: Indices 18066 -- 18565
CTCTCGCCACACCAAACGGGAATCACCACTACGCAAAGAAAACACGCTCTAAACTGTAGGCAAAC
CGCTCCACACATATCTAGTAACCACGTACCACCACCCCTACCCTTCTCCCTCCTCCCCTCCCCTC
CCTCAATTTCTCCTGCTTCCTCCTCCCTCCCCCCACGTTCAGTGCGCGTTTTCGCCTGGTCGGCA
CAGATCAGACGAAAACCTCCCGCAGCCTCCGCCTCCCCTCCCTACCCCCTCCCGCCCCTCCCGTC
TCCGGTTTACTCAGGACAGCCCCTACATTCCCGCTTCTCATACTCCCTGTCCTGAGAACCCATGG
AGGAATACGACCCGGGCCGCCGCTACGACCGTGGCGACGTCCGCGACCTACGCCTGCGACGGCAA
GCGCTGCAGTCGCAGCCCCAGACCCCGTCCTCCATTCGCATAGACACCTCGAGTGCCTCCCTCCG
CCCCGCGGCCTCGCGCACCCACACCTCGCGGAGCACCTCCAGCCA
Right flanking sequence: Indices 18615 -- 19114
AGCCACCACGGCCCCTCCTCTAGCCACGGCCCCTCCCAGGGTACCTCACACTCGCACCTCGGTGG
CTCCCTCCACACCCCGCACTCGCTCCACTCCATCCACAGCGAACCCAACCCGTTCGGGGTGTCGC
CGTTCAACCCCCAGCCGAGCCTCTCCCCGGGGCTGCCCCACCGCAAGCCCCCATTGTCCCCCTCG
CTGCCGGTGTCGCCTCTCCTCCTCGAAACCTCGCTCGACGACGACGGGCCGGGGGGCATCGACGC
CCTCCGCGAGGGGCTCAACTTCGCCCTCGAGGACGGCAACTGGTTGCCCGACATCACCCGGCGGG
CGCGGGCGCGCCGGGCTTCGCACGTGGAGGAGGAGGGTGCCTCCTCCCCCGACGACGAGGAGCGC
GCCGACTTGACCACCGACATCCCCCTCCAGCCCATGCGCCCGGCGCTCCGGGTGCAGACGCTGTT
CGGGGACATGGACGCGGCGCTCCCGCTGATCCTGTTGAACCCCGG
Found at i:25359 original size:10 final size:10
Alignment explanation
Indices: 25328--25376 Score: 64
Period size: 10 Copynumber: 5.0 Consensus size: 10
25318 AGTTACCAAG
25328 ATTGGCTGCA
1 ATTGGCTGCA
* *
25338 AAT-GCCGCA
1 ATTGGCTGCA
*
25347 ATTGGTTGCA
1 ATTGGCTGCA
25357 ATTGGCTGCA
1 ATTGGCTGCA
25367 ATTGGCTGCA
1 ATTGGCTGCA
25377 GTCATATGCA
Statistics
Matches: 32, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
9 7 0.22
10 25 0.78
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (10 bp):
ATTGGCTGCA
Left flanking sequence: Indices 24828 -- 25327
CGTGGCGACGGTGACCCGCGGTCGCTGGTATACGTGCCCGACCCGGAGCCCCCCGTCGTGTCCCC
CCCTCGTCCTTCGAGAGAAGTTCCCATTTTCACCTTTGACTCTGGGGCTCCCACGAGCCCGATCC
AGGGGTACGAGCCGGCCGAGCCGCTCCAGCTGGAGTTTGATTTCCAGGGCCGCCCTTACCCGTCG
TCACCAAGCCCAATGTTTGGTCGCGACCCCGTTGACACCCAGCTGTTGGACTCGGACGAAATGGA
GCCGTTGACAATTCGCGAGGTGTCCGAGCGGCCCACGGGATTGGGTATCACTCGACGACCCCCTC
CAGGGTCGCCCCCCCAGTCCCCATTTTAGCATTGATTTATAGAGTTGCATAAGATATGATATAGA
AAGATATGGTATTATGAAAGTGTGGGTGGATGAGGGGATTGAAGAAGACGTGCTGTCTTAGCGGC
TGTCATATTCAACGAGGCGTTAGAAGGACTTTTTGAGTTACCAAG
Right flanking sequence: Indices 25377 -- 25876
GTCATATGCAGAAAGTAGTTATAAGTAACAGACTTTTTTCTAGGGGACTGCACTGGTACCTGTTG
AGTCTTCTGTCGACCCCTCATTCCCGCGGGTATTGTTTGCTGATGGTCGGTTTTGTGTTCGGAAT
TAACGGTCTCCCCGCCAACGATCTGATAACCAGCCGTTCCAGATGGATCTGATAAATGTATTCCT
ACCGAAACTATTCACATATGGGACTTAAATGACGGGTGGTGTGCTTTTTCTCTACCACGGGCACC
GCTTGGGGTGGTTCTTCATCGTCCAGCGACGGTCTTGAGGTCTCTTCGTCATGGAAAGTGACGGT
GGTCCATGTGGGCAGGAGGGAACAGAACTTCCAGCGGTAGGCGCTAACCAGAGCAAAAGACGAGC
CTCGGGTGTATTCGTAAGAGTCCATTGACGAAGGAGCCAAGACCTCGGGTTATATATCTTGTCGG
GGTTATCGTTGTCAGGTACATACTCCCGAACAATGGTTGTGAGTC
Found at i:27693 original size:16 final size:16
Alignment explanation
Indices: 27674--27810 Score: 170
Period size: 16 Copynumber: 8.6 Consensus size: 16
27664 GTTGACTACT
*
27674 ATACTAATTGCTTACC
1 ATACCAATTGCTTACC
27690 ATACCAATTGCTTACC
1 ATACCAATTGCTTACC
* *
27706 AGACCAATTG-TGACC
1 ATACCAATTGCTTACC
*
27721 ATACCAATTGCTTATC
1 ATACCAATTGCTTACC
27737 ATACCAATTGCTTACC
1 ATACCAATTGCTTACC
*
27753 A-AGCCAATTGCTGACC
1 ATA-CCAATTGCTTACC
* *
27769 GTACCAAATGCTTACC
1 ATACCAATTGCTTACC
* *
27785 ATACCACTTGCCTACC
1 ATACCAATTGCTTACC
27801 ATACCAATTG
1 ATACCAATTG
27811 GTTTCACCAT
Statistics
Matches: 102, Mismatches: 16, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
15 14 0.14
16 87 0.85
17 1 0.01
ACGTcount: A:0.31, C:0.30, G:0.10, T:0.28
Consensus pattern (16 bp):
ATACCAATTGCTTACC
Left flanking sequence: Indices 27174 -- 27673
AGGTGCAAACGTACGCGCTGTTTATGCTCTCGTTCATCGGGCGGGGGGTGTTCTACACGCTTATT
GCGCTGATGATCAACGGGGCGCTGATCTTCCGGGTGTTTGCCCTGTTGATTATCTTTTTGGTGGG
GTTGGGCTACATAGGGTTACAGAGTGTTCCGCTGGTGCTGGCGCCCCCGAATATGTCTCTGGGCG
AGGGGGTGGCCCTCGATAACGACGACATTATTTAGACGGTTACGAATAAACGAAAGACGAATGGT
CAGGTGCGGGGACGGTTGGTGGCAAAGGGGTAGACGAGTGTGGCGACGAGCGAGACGAGACGAAA
AAAGGATGACCAGGAGCACTGACGTAATCAGGGGTGAGGTCGTAATAGCATCGCTGCTTGGCAGT
GGCCAGGGGTATCAATTGACGGTCTGGCCTATCTTAAGTACCATAGTAACAACGAACAACGACTA
CCTCGGATGGCCACCAACCATACCCGTAGATACCAGTTGACTACT
Right flanking sequence: Indices 27811 -- 28310
GTTTCACCATCGTCCACCAATTAACTGCCATACAACTACCTATTGGAACCAGTGACGCGCTCACT
AATTGCCTTGTCTAACCTTTTCTCTCCCCTTTTCTCTCTATTTCTCTCTATTTCTCTCTATTCTC
TCCATTCTCTCCATTCTCTCCATTTCTCCTCTCAATTCTCTCCATTCCCTCCATTCTCTCCATTC
CCTCCATTCTCTCCATTCTCCATTACACTTATATTATCTGGTTTATACTGTGTACATTAGCTTAA
CGAGGACCCTTCACTCACCTTACCACCCTAGCGCACTTACAAGTCACGGTCGTCACGCAACGGCT
GCGTCTGCTCGTTGACACCCTCGAACTTCTTCTCGCCCTGCACGTTGTCCACGTTGTGGTGGTCT
CTGTTCAACTCGGGGAGGTGGTGGTGCTTGTGGTGGTGGTGGTGGCTCTCGTGGGCCTCTCTCTG
CTCCTCTTCCTCGCGGCCAATCTCGCGCTGGGCGGCTCTCAGCGC
Found at i:27941 original size:9 final size:9
Alignment explanation
Indices: 27907--28025 Score: 139
Period size: 9 Copynumber: 12.6 Consensus size: 9
27897 CTCTCCCCTT
*
27907 TTCTCTCTA
1 TTCTCTCCA
*
27916 TTTCTCTCTA
1 -TTCTCTCCA
*
27926 TTTCTCTCTA
1 -TTCTCTCCA
27936 TTCTCTCCA
1 TTCTCTCCA
27945 TTCTCTCCA
1 TTCTCTCCA
27954 TTCTCTCCA
1 TTCTCTCCA
27963 TTTCTCCTCTCAA
1 -TTCT-CTC-C-A
27976 TTCTCTCCA
1 TTCTCTCCA
*
27985 TTCCCTCCA
1 TTCTCTCCA
27994 TTCTCTCCA
1 TTCTCTCCA
*
28003 TTCCCTCCA
1 TTCTCTCCA
28012 TTCTCTCCA
1 TTCTCTCCA
28021 TTCTC
1 TTCTC
28026 CATTACACTT
Statistics
Matches: 100, Mismatches: 5, Indels: 9
0.88 0.04 0.08
Matches are distributed among these distances:
9 64 0.64
10 24 0.24
11 6 0.06
12 5 0.05
13 1 0.01
ACGTcount: A:0.11, C:0.42, G:0.00, T:0.47
Consensus pattern (9 bp):
TTCTCTCCA
Left flanking sequence: Indices 27407 -- 27906
GTTACGAATAAACGAAAGACGAATGGTCAGGTGCGGGGACGGTTGGTGGCAAAGGGGTAGACGAG
TGTGGCGACGAGCGAGACGAGACGAAAAAAGGATGACCAGGAGCACTGACGTAATCAGGGGTGAG
GTCGTAATAGCATCGCTGCTTGGCAGTGGCCAGGGGTATCAATTGACGGTCTGGCCTATCTTAAG
TACCATAGTAACAACGAACAACGACTACCTCGGATGGCCACCAACCATACCCGTAGATACCAGTT
GACTACTATACTAATTGCTTACCATACCAATTGCTTACCAGACCAATTGTGACCATACCAATTGC
TTATCATACCAATTGCTTACCAAGCCAATTGCTGACCGTACCAAATGCTTACCATACCACTTGCC
TACCATACCAATTGGTTTCACCATCGTCCACCAATTAACTGCCATACAACTACCTATTGGAACCA
GTGACGCGCTCACTAATTGCCTTGTCTAACCTTTTCTCTCCCCTT
Right flanking sequence: Indices 28026 -- 28525
CATTACACTTATATTATCTGGTTTATACTGTGTACATTAGCTTAACGAGGACCCTTCACTCACCT
TACCACCCTAGCGCACTTACAAGTCACGGTCGTCACGCAACGGCTGCGTCTGCTCGTTGACACCC
TCGAACTTCTTCTCGCCCTGCACGTTGTCCACGTTGTGGTGGTCTCTGTTCAACTCGGGGAGGTG
GTGGTGCTTGTGGTGGTGGTGGTGGCTCTCGTGGGCCTCTCTCTGCTCCTCTTCCTCGCGGCCAA
TCTCGCGCTGGGCGGCTCTCAGCGCGGGCACCCCGTCCAACAGGTCGCCCAACCCAGGCTGCTCG
CCCTCAAGGAGGTCCTCCGCGGGCTCGTACCCGTCGGTGGCCACCACCGTGGGCTCGGGCCGGTC
CACCGACGCTCTGCGCTGAGCAGCCTCGGTGAACGCGCCCATAGGAGCCGTCTTGGGGTTGCGGT
TCTCCGAGGGGAGCGCCGCGTCGTAGGGGCCGTCGTGGTGCAACC
Found at i:27999 original size:49 final size:48
Alignment explanation
Indices: 27907--28019 Score: 156
Period size: 49 Copynumber: 2.3 Consensus size: 48
27897 CTCTCCCCTT
* * * *
27907 TTCTCTCTATTTCT-CTCTATTTCTCTCTATTCTCTCCATTCTCTCCA
1 TTCTCTCCATTTCTCCTCTAATTCTCTCCATTCCCTCCATTCTCTCCA
27954 TTCTCTCCATTTCTCCTCTCAATTCTCTCCATTCCCTCCATTCTCTCCA
1 TTCTCTCCATTTCTCCTCT-AATTCTCTCCATTCCCTCCATTCTCTCCA
*
28003 TTCCCTCCATTCTCTCC
1 TTCTCTCCATT-TCTCC
28020 ATTCTCCATT
Statistics
Matches: 58, Mismatches: 5, Indels: 3
0.88 0.08 0.05
Matches are distributed among these distances:
47 13 0.22
48 4 0.07
49 36 0.62
50 5 0.09
ACGTcount: A:0.11, C:0.42, G:0.00, T:0.47
Consensus pattern (48 bp):
TTCTCTCCATTTCTCCTCTAATTCTCTCCATTCCCTCCATTCTCTCCA
Left flanking sequence: Indices 27407 -- 27906
GTTACGAATAAACGAAAGACGAATGGTCAGGTGCGGGGACGGTTGGTGGCAAAGGGGTAGACGAG
TGTGGCGACGAGCGAGACGAGACGAAAAAAGGATGACCAGGAGCACTGACGTAATCAGGGGTGAG
GTCGTAATAGCATCGCTGCTTGGCAGTGGCCAGGGGTATCAATTGACGGTCTGGCCTATCTTAAG
TACCATAGTAACAACGAACAACGACTACCTCGGATGGCCACCAACCATACCCGTAGATACCAGTT
GACTACTATACTAATTGCTTACCATACCAATTGCTTACCAGACCAATTGTGACCATACCAATTGC
TTATCATACCAATTGCTTACCAAGCCAATTGCTGACCGTACCAAATGCTTACCATACCACTTGCC
TACCATACCAATTGGTTTCACCATCGTCCACCAATTAACTGCCATACAACTACCTATTGGAACCA
GTGACGCGCTCACTAATTGCCTTGTCTAACCTTTTCTCTCCCCTT
Right flanking sequence: Indices 28020 -- 28519
ATTCTCCATTACACTTATATTATCTGGTTTATACTGTGTACATTAGCTTAACGAGGACCCTTCAC
TCACCTTACCACCCTAGCGCACTTACAAGTCACGGTCGTCACGCAACGGCTGCGTCTGCTCGTTG
ACACCCTCGAACTTCTTCTCGCCCTGCACGTTGTCCACGTTGTGGTGGTCTCTGTTCAACTCGGG
GAGGTGGTGGTGCTTGTGGTGGTGGTGGTGGCTCTCGTGGGCCTCTCTCTGCTCCTCTTCCTCGC
GGCCAATCTCGCGCTGGGCGGCTCTCAGCGCGGGCACCCCGTCCAACAGGTCGCCCAACCCAGGC
TGCTCGCCCTCAAGGAGGTCCTCCGCGGGCTCGTACCCGTCGGTGGCCACCACCGTGGGCTCGGG
CCGGTCCACCGACGCTCTGCGCTGAGCAGCCTCGGTGAACGCGCCCATAGGAGCCGTCTTGGGGT
TGCGGTTCTCCGAGGGGAGCGCCGCGTCGTAGGGGCCGTCGTGGT
Found at i:28916 original size:18 final size:18
Alignment explanation
Indices: 28890--28932 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
28880 AGGTGGAGTA
*
28890 GGGAAAGAATGTGTGATG
1 GGGATAGAATGTGTGATG
*
28908 GGGATAGAATGTGTGGTG
1 GGGATAGAATGTGTGATG
*
28926 GAGATAG
1 GGGATAG
28933 GCGGGGAAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.30, C:0.00, G:0.47, T:0.23
Consensus pattern (18 bp):
GGGATAGAATGTGTGATG
Left flanking sequence: Indices 28390 -- 28889
GCCACCACCGTGGGCTCGGGCCGGTCCACCGACGCTCTGCGCTGAGCAGCCTCGGTGAACGCGCC
CATAGGAGCCGTCTTGGGGTTGCGGTTCTCCGAGGGGAGCGCCGCGTCGTAGGGGCCGTCGTGGT
GCAACCCCATGCTCACGGGGTCCATGCCGTCGACGGTGTCGACGCCGGGCTCGTTCAGGTGCATT
TTCTCCTTCAATTTGTCAAACATGGTGGTGGAGGGTGAAATTCGGGTTGATTGCTGTTAACCCGT
CGCCTACGCTGTCTGCAGGGGTCGGCAGTGGCGGTTCAGACAATGGAGAGTGGTAGTGGGGGAAG
CTGGGAGCGTGGGGTGCGGGCTTACGGGTGTGGTGGGGGCCTACGGTAGGTTCCTCGAGCGAGTA
GGTGGAGCTCTTGGTGTTGGGGTGGCTGGCTCGGGTCGGGCTCGACGTGTGTTCGAACGCGTTGT
TTTTACGAGTATTGCGCGTGGCTGTGCTGTATGGAAGGTGGAGTA
Right flanking sequence: Indices 28933 -- 29432
GCGGGGAAAATACCAGGTGGTGTAGGTGGTGTATTTGGGGGTAATGTCGTAGGTGGGCTGATGTG
ATGGGAGATGTCGTCAAATTTTTGATGTATTTTCAACTTTCTGATATATTTTGTCAAATGAGGAA
GAAAATGTGAAATGGGAACAGGAAGGACATAGGAAGGAACAGATAGGACACAGGCAGGACACAGG
GAAGAACACTTAATCATAACAGTACGTAGCTAGTGTGAGAAACTGAAAGCGCAAGTTTTAAAAGC
ACCCCATACTATTCGAGAACGCCGTAGACCACCACACCACACCGAGCCTTCATCGTGTGATGGGT
CATCTCCTCATCCAGTGTCACAAAATCCAACCTCTTCTCCTACACATCCAAACAGCACACGACGC
TACACTACACTCCACTGCATAAATACGCATCACCCCCCACTCATTTCTCTCCTTTCCTAGTACCT
TCCCAGTAACCATTCGTTCGCACTCCTCCGTCGGACGCAAATCCT
Found at i:29103 original size:21 final size:22
Alignment explanation
Indices: 29077--29127 Score: 61
Period size: 21 Copynumber: 2.4 Consensus size: 22
29067 ATGTGAAATG
*
29077 GGAACAGGA-AGGACATAGGAA
1 GGAACAGGATAGGACACAGGAA
*
29098 GGAACA-GATAGGACACAGGCA
1 GGAACAGGATAGGACACAGGAA
29119 GGACACAGG
1 GGA-ACAGG
29128 GAAGAACACT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
20 2 0.08
21 19 0.76
22 3 0.12
23 1 0.04
ACGTcount: A:0.43, C:0.16, G:0.37, T:0.04
Consensus pattern (22 bp):
GGAACAGGATAGGACACAGGAA
Left flanking sequence: Indices 28577 -- 29076
GGTGCATTTTCTCCTTCAATTTGTCAAACATGGTGGTGGAGGGTGAAATTCGGGTTGATTGCTGT
TAACCCGTCGCCTACGCTGTCTGCAGGGGTCGGCAGTGGCGGTTCAGACAATGGAGAGTGGTAGT
GGGGGAAGCTGGGAGCGTGGGGTGCGGGCTTACGGGTGTGGTGGGGGCCTACGGTAGGTTCCTCG
AGCGAGTAGGTGGAGCTCTTGGTGTTGGGGTGGCTGGCTCGGGTCGGGCTCGACGTGTGTTCGAA
CGCGTTGTTTTTACGAGTATTGCGCGTGGCTGTGCTGTATGGAAGGTGGAGTAGGGAAAGAATGT
GTGATGGGGATAGAATGTGTGGTGGAGATAGGCGGGGAAAATACCAGGTGGTGTAGGTGGTGTAT
TTGGGGGTAATGTCGTAGGTGGGCTGATGTGATGGGAGATGTCGTCAAATTTTTGATGTATTTTC
AACTTTCTGATATATTTTGTCAAATGAGGAAGAAAATGTGAAATG
Right flanking sequence: Indices 29128 -- 29627
GAAGAACACTTAATCATAACAGTACGTAGCTAGTGTGAGAAACTGAAAGCGCAAGTTTTAAAAGC
ACCCCATACTATTCGAGAACGCCGTAGACCACCACACCACACCGAGCCTTCATCGTGTGATGGGT
CATCTCCTCATCCAGTGTCACAAAATCCAACCTCTTCTCCTACACATCCAAACAGCACACGACGC
TACACTACACTCCACTGCATAAATACGCATCACCCCCCACTCATTTCTCTCCTTTCCTAGTACCT
TCCCAGTAACCATTCGTTCGCACTCCTCCGTCGGACGCAAATCCTCCCCTCCGCGAGGAACACAC
TAACCAAAGGTCCCGAGTCAAAGCCTCCCACTCCCTCCCTCCTCCTCCACCGCCTCTTCCAACCA
CCATCCTCCCCTAGTCCACCACCGTCTCCACCATCCACCACCCCATATCGCACTTTCTTGCAGCA
AATTTTCTCACAACAACACCCATGCTCAACCACGTCCAGCGGCTC
Found at i:29127 original size:11 final size:11
Alignment explanation
Indices: 29080--29127 Score: 55
Period size: 11 Copynumber: 4.5 Consensus size: 11
29070 TGAAATGGGA
29080 ACAGGAAGGAC
1 ACAGGAAGGAC
*
29091 ATAGGAAGGA-
1 ACAGGAAGGAC
29101 ACA-GATAGGAC
1 ACAGGA-AGGAC
*
29112 ACAGGCAGGAC
1 ACAGGAAGGAC
29123 ACAGG
1 ACAGG
29128 GAAGAACACT
Statistics
Matches: 31, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
9 2 0.06
10 6 0.19
11 22 0.71
12 1 0.03
ACGTcount: A:0.44, C:0.17, G:0.35, T:0.04
Consensus pattern (11 bp):
ACAGGAAGGAC
Left flanking sequence: Indices 28580 -- 29079
GCATTTTCTCCTTCAATTTGTCAAACATGGTGGTGGAGGGTGAAATTCGGGTTGATTGCTGTTAA
CCCGTCGCCTACGCTGTCTGCAGGGGTCGGCAGTGGCGGTTCAGACAATGGAGAGTGGTAGTGGG
GGAAGCTGGGAGCGTGGGGTGCGGGCTTACGGGTGTGGTGGGGGCCTACGGTAGGTTCCTCGAGC
GAGTAGGTGGAGCTCTTGGTGTTGGGGTGGCTGGCTCGGGTCGGGCTCGACGTGTGTTCGAACGC
GTTGTTTTTACGAGTATTGCGCGTGGCTGTGCTGTATGGAAGGTGGAGTAGGGAAAGAATGTGTG
ATGGGGATAGAATGTGTGGTGGAGATAGGCGGGGAAAATACCAGGTGGTGTAGGTGGTGTATTTG
GGGGTAATGTCGTAGGTGGGCTGATGTGATGGGAGATGTCGTCAAATTTTTGATGTATTTTCAAC
TTTCTGATATATTTTGTCAAATGAGGAAGAAAATGTGAAATGGGA
Right flanking sequence: Indices 29128 -- 29627
GAAGAACACTTAATCATAACAGTACGTAGCTAGTGTGAGAAACTGAAAGCGCAAGTTTTAAAAGC
ACCCCATACTATTCGAGAACGCCGTAGACCACCACACCACACCGAGCCTTCATCGTGTGATGGGT
CATCTCCTCATCCAGTGTCACAAAATCCAACCTCTTCTCCTACACATCCAAACAGCACACGACGC
TACACTACACTCCACTGCATAAATACGCATCACCCCCCACTCATTTCTCTCCTTTCCTAGTACCT
TCCCAGTAACCATTCGTTCGCACTCCTCCGTCGGACGCAAATCCTCCCCTCCGCGAGGAACACAC
TAACCAAAGGTCCCGAGTCAAAGCCTCCCACTCCCTCCCTCCTCCTCCACCGCCTCTTCCAACCA
CCATCCTCCCCTAGTCCACCACCGTCTCCACCATCCACCACCCCATATCGCACTTTCTTGCAGCA
AATTTTCTCACAACAACACCCATGCTCAACCACGTCCAGCGGCTC
Found at i:32441 original size:15 final size:15
Alignment explanation
Indices: 32421--32482 Score: 70
Period size: 15 Copynumber: 4.1 Consensus size: 15
32411 CGCTGTGGTG
32421 GTTGCTCCAGCTTTC
1 GTTGCTCCAGCTTTC
32436 GTTGCTCCAGCTTTC
1 GTTGCTCCAGCTTTC
* ** *
32451 ATCACTCCAGCTATC
1 GTTGCTCCAGCTTTC
* *
32466 ATTGCTCCAGCTGTC
1 GTTGCTCCAGCTTTC
32481 GT
1 GT
32483 CGTCGCTCCA
Statistics
Matches: 39, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 39 1.00
ACGTcount: A:0.13, C:0.34, G:0.18, T:0.35
Consensus pattern (15 bp):
GTTGCTCCAGCTTTC
Left flanking sequence: Indices 31921 -- 32420
CTGCCAACCAGCGACAGATGCTGCCCCAGGACCGGCAATTGATGCAGATGCAGATGCAAATGAGA
CAGCACCAGCAGATGATGGGGATGCCCCAGAATCCCCAGTCGCCGTTTGACCCGGAGAAGCAGGA
GTAACGATAATGACATGCATATAGTAATAGGAATTGAGAAATTTTGCAACCATGCAACCCCACGC
ACGAGGTGCATACGCGAGCCACATACGAATAAAGGGTCCTTCGGGAACAAAAACATCTTAACTAT
GGAACTATAACGAGACAGGAAAAATCAAACAGTCAAAGAAAAAAATCAGAGAAGGAAAAGACCCG
CGGCAAGGGCAACAGCGAATCCTACAGTCTTCCGCGACCCGCCATTGTCCAGCTTGGTGCTGGGC
TCGGACGCCGACGATTGCTTCAGGTCTGACTTACCACCACCGGCTTGATTGTTAGAGCCAGTAGT
AGTCTGGTCGAGCGAGGCGTCTCTGTTGCCGTGGTCGCTGTGGTG
Right flanking sequence: Indices 32483 -- 32982
CGTCGCTCCAACTCTCGCTCCAGCTATCATGGTCCCCATGGCCCAGAGATTTAGCCGCCTGCGTG
GTCTTGCTGAGGTTGCTGGTGTTAGCATCAGCAGCGGCTGCAGCTACAGTACCGCCCTGGGTCTG
CGACCCACCCCGGGTTTGTGTTCCATGGTTGCCCCAATCACCGTGGCTCCAGGAGTTGTCCCATT
TATCATTGCTCCAGGTAGACGTCCATCTGTCGTTACTCCAGGTAGACGCCCATCTCTCGTTACTC
CAGGTAGAACCCCAGTCACCATGGCTCCACGAGTCCGAATGCCAATCGTCGTGCCAGTCGTCATG
ATCGGAGTCCCCATCATGGTCCGTCCAGTTACCGTCATGGTCGTCGTGGTCATTGTCGTGGTCCG
TCCAGTTATCGTCATCGTCATCGTCCCAGTCGTCTCGCCGAACTTTGCTTCTAGCCTTCCAAAGT
TGGATAGAATCAACGGGGATCTTTCCATTTGTCTCGTCATACAAC
Found at i:32703 original size:27 final size:27
Alignment explanation
Indices: 32672--32750 Score: 104
Period size: 27 Copynumber: 2.9 Consensus size: 27
32662 CAGGAGTTGT
* * *
32672 CCCATTTATCATTGCTCCAGGTAGACG
1 CCCATCTATCGTTACTCCAGGTAGACG
* *
32699 TCCATCTGTCGTTACTCCAGGTAGACG
1 CCCATCTATCGTTACTCCAGGTAGACG
*
32726 CCCATCTCTCGTTACTCCAGGTAGA
1 CCCATCTATCGTTACTCCAGGTAGA
32751 ACCCCAGTCA
Statistics
Matches: 45, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 45 1.00
ACGTcount: A:0.20, C:0.32, G:0.19, T:0.29
Consensus pattern (27 bp):
CCCATCTATCGTTACTCCAGGTAGACG
Left flanking sequence: Indices 32172 -- 32671
CTTAACTATGGAACTATAACGAGACAGGAAAAATCAAACAGTCAAAGAAAAAAATCAGAGAAGGA
AAAGACCCGCGGCAAGGGCAACAGCGAATCCTACAGTCTTCCGCGACCCGCCATTGTCCAGCTTG
GTGCTGGGCTCGGACGCCGACGATTGCTTCAGGTCTGACTTACCACCACCGGCTTGATTGTTAGA
GCCAGTAGTAGTCTGGTCGAGCGAGGCGTCTCTGTTGCCGTGGTCGCTGTGGTGGTTGCTCCAGC
TTTCGTTGCTCCAGCTTTCATCACTCCAGCTATCATTGCTCCAGCTGTCGTCGTCGCTCCAACTC
TCGCTCCAGCTATCATGGTCCCCATGGCCCAGAGATTTAGCCGCCTGCGTGGTCTTGCTGAGGTT
GCTGGTGTTAGCATCAGCAGCGGCTGCAGCTACAGTACCGCCCTGGGTCTGCGACCCACCCCGGG
TTTGTGTTCCATGGTTGCCCCAATCACCGTGGCTCCAGGAGTTGT
Right flanking sequence: Indices 32751 -- 33250
ACCCCAGTCACCATGGCTCCACGAGTCCGAATGCCAATCGTCGTGCCAGTCGTCATGATCGGAGT
CCCCATCATGGTCCGTCCAGTTACCGTCATGGTCGTCGTGGTCATTGTCGTGGTCCGTCCAGTTA
TCGTCATCGTCATCGTCCCAGTCGTCTCGCCGAACTTTGCTTCTAGCCTTCCAAAGTTGGATAGA
ATCAACGGGGATCTTTCCATTTGTCTCGTCATACAACGACTCATACTTAGAGGCAACAGAGTCAG
CGTAGGCAACATCGTATCTGTCGTGGAGGATCTTGCCAATCACCTCAGGGCTGGCCGTGTAGAAA
AGACCATTGTCCCAGTGAATGAGATCGTCGGCAAGAACTTGAGCAATCAATAAAAATTGGAAAAA
CATGTTGATCTTACAAGCTACAGCGGAGACTTTATATATTGGTGCCTTTAAGGGTGTGCATCTGC
ATGATAATAATTTGCAGCCAGTTACGACGAACAATGACCGTAGTG
Found at i:32756 original size:27 final size:27
Alignment explanation
Indices: 32686--32750 Score: 112
Period size: 27 Copynumber: 2.4 Consensus size: 27
32676 TTTATCATTG
* *
32686 CTCCAGGTAGACGTCCATCTGTCGTTA
1 CTCCAGGTAGACGCCCATCTCTCGTTA
32713 CTCCAGGTAGACGCCCATCTCTCGTTA
1 CTCCAGGTAGACGCCCATCTCTCGTTA
32740 CTCCAGGTAGA
1 CTCCAGGTAGA
32751 ACCCCAGTCA
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
27 36 1.00
ACGTcount: A:0.20, C:0.32, G:0.22, T:0.26
Consensus pattern (27 bp):
CTCCAGGTAGACGCCCATCTCTCGTTA
Left flanking sequence: Indices 32186 -- 32685
TATAACGAGACAGGAAAAATCAAACAGTCAAAGAAAAAAATCAGAGAAGGAAAAGACCCGCGGCA
AGGGCAACAGCGAATCCTACAGTCTTCCGCGACCCGCCATTGTCCAGCTTGGTGCTGGGCTCGGA
CGCCGACGATTGCTTCAGGTCTGACTTACCACCACCGGCTTGATTGTTAGAGCCAGTAGTAGTCT
GGTCGAGCGAGGCGTCTCTGTTGCCGTGGTCGCTGTGGTGGTTGCTCCAGCTTTCGTTGCTCCAG
CTTTCATCACTCCAGCTATCATTGCTCCAGCTGTCGTCGTCGCTCCAACTCTCGCTCCAGCTATC
ATGGTCCCCATGGCCCAGAGATTTAGCCGCCTGCGTGGTCTTGCTGAGGTTGCTGGTGTTAGCAT
CAGCAGCGGCTGCAGCTACAGTACCGCCCTGGGTCTGCGACCCACCCCGGGTTTGTGTTCCATGG
TTGCCCCAATCACCGTGGCTCCAGGAGTTGTCCCATTTATCATTG
Right flanking sequence: Indices 32751 -- 33250
ACCCCAGTCACCATGGCTCCACGAGTCCGAATGCCAATCGTCGTGCCAGTCGTCATGATCGGAGT
CCCCATCATGGTCCGTCCAGTTACCGTCATGGTCGTCGTGGTCATTGTCGTGGTCCGTCCAGTTA
TCGTCATCGTCATCGTCCCAGTCGTCTCGCCGAACTTTGCTTCTAGCCTTCCAAAGTTGGATAGA
ATCAACGGGGATCTTTCCATTTGTCTCGTCATACAACGACTCATACTTAGAGGCAACAGAGTCAG
CGTAGGCAACATCGTATCTGTCGTGGAGGATCTTGCCAATCACCTCAGGGCTGGCCGTGTAGAAA
AGACCATTGTCCCAGTGAATGAGATCGTCGGCAAGAACTTGAGCAATCAATAAAAATTGGAAAAA
CATGTTGATCTTACAAGCTACAGCGGAGACTTTATATATTGGTGCCTTTAAGGGTGTGCATCTGC
ATGATAATAATTTGCAGCCAGTTACGACGAACAATGACCGTAGTG
Found at i:36265 original size:13 final size:13
Alignment explanation
Indices: 36249--36282 Score: 68
Period size: 13 Copynumber: 2.6 Consensus size: 13
36239 TTCACTGGTA
36249 CACCACTCCCACT
1 CACCACTCCCACT
36262 CACCACTCCCACT
1 CACCACTCCCACT
36275 CACCACTC
1 CACCACTC
36283 TTCAATTACT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.24, C:0.62, G:0.00, T:0.15
Consensus pattern (13 bp):
CACCACTCCCACT
Left flanking sequence: Indices 35749 -- 36248
GGGATTTCGCCGCCAGGGACGCGTACCGGCGCCAGATCATTGGTAATGGGACGGTGATGGTAGGC
TAAATGTTCGCGAAGCAGGGCTCAAAATGAGATGGTGAAGAGGAAGTGGGGAGGGCGAGAGGTGT
GTATGGTGAGAGACTAGAGTATGTTGTGGTTGTGAGTGGTGGTTGCTTTGGGTCATCGCGGTTTG
GTGGTATGTTGAAGTGTAAGTTTTGTAGATGACCGCATTGGTACATTCCTATGGTCGATACAAAC
AAACTATATGCTCTACACTAGCGATTCCAGTTCCTGTTCTAGAACACCTTTTGGACCATCCCACC
TCGCCACCCACCACCAGCTTGACGATCCTTACGCGTCAGTGTTTACCCCACACTAAAATCCCGCA
TTTAGACGAGACGAGGTTGGAGGTCACCACGCATGGTCACTCGTATTCCACCATCAGTCCAACCA
TCATCCACTTCAGCGCCTTAGCACCACAATCACACTTCACTGGTA
Right flanking sequence: Indices 36283 -- 36782
TTCAATTACTGTTCATTTATAATACGTACACTTCGTCACCCCTAAACCGAGGTGAAGAGCATCCA
CACCCCCTTCAAGTAGCCGACTATCTCGTCACCACCAAGCTTCAGCTCACCGTACAACCGGTCAA
CAAAAGAAATGGGCACCTCGCCAATGGTGAACCCCAACGCTCTCGCGCGCACCATCATCTCCATC
TGGAACACGTAGCCCTTGGACTTGGTCGCCTCGATGATCTTCTGGAGGGCCTCCTTTTTGTACAA
CCGGAACGACCCGGTCAAGTCCAGCACCAGGGGACGCAACGCGGTCGCCGCCAAGAAGTTGGCCC
CTCTCAGCACCAACTTGCGCTTCAAGTCCCACCCGTAGACACCACCGTCGCCCGCGTACCGCGTA
CCGGTGACAATGTCGTAGTTGCCCTCCTTCTGCTTGGCAATGAACTCGGGGATCGCCTCGGGGTG
GTGCGAGAAGTCAGCGTCCATGATGATGACAAAGTTGCCGGTGAC
Found at i:36269 original size:7 final size:7
Alignment explanation
Indices: 36249--36282 Score: 54
Period size: 7 Copynumber: 5.1 Consensus size: 7
36239 TTCACTGGTA
36249 CACCACT
1 CACCACT
36256 C-CCACT
1 CACCACT
36262 CACCACT
1 CACCACT
36269 C-CCACT
1 CACCACT
36275 CACCACT
1 CACCACT
36282 C
1 C
36283 TTCAATTACT
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
6 12 0.48
7 13 0.52
ACGTcount: A:0.24, C:0.62, G:0.00, T:0.15
Consensus pattern (7 bp):
CACCACT
Left flanking sequence: Indices 35749 -- 36248
GGGATTTCGCCGCCAGGGACGCGTACCGGCGCCAGATCATTGGTAATGGGACGGTGATGGTAGGC
TAAATGTTCGCGAAGCAGGGCTCAAAATGAGATGGTGAAGAGGAAGTGGGGAGGGCGAGAGGTGT
GTATGGTGAGAGACTAGAGTATGTTGTGGTTGTGAGTGGTGGTTGCTTTGGGTCATCGCGGTTTG
GTGGTATGTTGAAGTGTAAGTTTTGTAGATGACCGCATTGGTACATTCCTATGGTCGATACAAAC
AAACTATATGCTCTACACTAGCGATTCCAGTTCCTGTTCTAGAACACCTTTTGGACCATCCCACC
TCGCCACCCACCACCAGCTTGACGATCCTTACGCGTCAGTGTTTACCCCACACTAAAATCCCGCA
TTTAGACGAGACGAGGTTGGAGGTCACCACGCATGGTCACTCGTATTCCACCATCAGTCCAACCA
TCATCCACTTCAGCGCCTTAGCACCACAATCACACTTCACTGGTA
Right flanking sequence: Indices 36283 -- 36782
TTCAATTACTGTTCATTTATAATACGTACACTTCGTCACCCCTAAACCGAGGTGAAGAGCATCCA
CACCCCCTTCAAGTAGCCGACTATCTCGTCACCACCAAGCTTCAGCTCACCGTACAACCGGTCAA
CAAAAGAAATGGGCACCTCGCCAATGGTGAACCCCAACGCTCTCGCGCGCACCATCATCTCCATC
TGGAACACGTAGCCCTTGGACTTGGTCGCCTCGATGATCTTCTGGAGGGCCTCCTTTTTGTACAA
CCGGAACGACCCGGTCAAGTCCAGCACCAGGGGACGCAACGCGGTCGCCGCCAAGAAGTTGGCCC
CTCTCAGCACCAACTTGCGCTTCAAGTCCCACCCGTAGACACCACCGTCGCCCGCGTACCGCGTA
CCGGTGACAATGTCGTAGTTGCCCTCCTTCTGCTTGGCAATGAACTCGGGGATCGCCTCGGGGTG
GTGCGAGAAGTCAGCGTCCATGATGATGACAAAGTTGCCGGTGAC
Found at i:37343 original size:13 final size:13
Alignment explanation
Indices: 37325--37351 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
37315 TAGGATGTTG
37325 GTATAGTCGGTTA
1 GTATAGTCGGTTA
37338 GTATAGTCGGTTA
1 GTATAGTCGGTTA
37351 G
1 G
37352 GTGAACAAGG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.22, C:0.07, G:0.33, T:0.37
Consensus pattern (13 bp):
GTATAGTCGGTTA
Left flanking sequence: Indices 36825 -- 37324
CCCCGCACGGGGACGCAACTGGATGTGGGAGGCGCCAAACACGTCGATAAGCTGCTTGGCAATCT
CCTGGGTGCCGTCGGGCAGGGCGTCGTCGACGATGACGACCTCCCAGTCCAACTTGTGGGCGTCC
ATGGTCTTGGCGAGGAGGTAGATGAGGATCGGAAGGTTCTTCCGCTCGTTGTACGTCGGGAGGAT
CACAGAGTACTTGTCGGTCATGTTGTGGCCACGTCTGACGCGTGGAAAAGAGCGCGAAGAACGCG
GTGGGTGAAAAATCGAGAGAGGGGGAAAACGGGAGAACGGGAAAAGGGGAAGAGGGTAGACGAGG
GTGTGGTAGTGGGTTGTGGGAAAGCGATGTGAGTTGGCTTGAGGTGTTTTACGGGCTCAATTGGG
TGGGAGAGGGGGTTGGAGAAGTGACCTACGTGTTTGGTAGGATTGTGTGCAGGTTACATAGACGA
AAGGGTAGACAGTATAAGGTTAAGGGTTGATTGTCTAGGATGTTG
Right flanking sequence: Indices 37352 -- 37851
GTGAACAAGGTGAAGGTAAATGAGTATGGGTGAGGCAGTTGTGGGTTTGGGGTAGTTGTGGGGTT
GGAGTAGTTGTGACTTTGCTTTGGATGTTACTAGATTGCAACACAGCGGTAGTCTCGTGGTCTAT
GGTACTGTGTGAATTGAAAAAGTAGGGAGGTGGTGGATTAAACTTGGTTCGGTGGTTGTCAGATC
CATCTTCGTACATTCTAATCGATGAAATTTTGGTACTGTGGTATATGAGTTCCCCCATTTGGAGA
TGGTACTTAGATTGCCAAGTTTGAAAACAAGGATCATACCTCGGTACTATAAGTAGTCAGTTTGT
TTCGGGGAGGATGTTGCAGTAGCGGTGTGGAGTGGTATGAAGTGGTGAGCACTAGAGGTGTGGAA
TGGTGGCATGATGAATTGAAAGGTGGAAATTTGTCGTAGAGTTAGGATGGAATGCACGGTTACAA
GGTCCGATAAGGGCCAACAGTGTTGAAGTGTTTTTACCTAGAACA
Found at i:37410 original size:17 final size:17
Alignment explanation
Indices: 37388--37428 Score: 64
Period size: 17 Copynumber: 2.4 Consensus size: 17
37378 TGGGTGAGGC
* *
37388 AGTTGTGGGTTTGGGGT
1 AGTTGTGGGGTTGGAGT
37405 AGTTGTGGGGTTGGAGT
1 AGTTGTGGGGTTGGAGT
37422 AGTTGTG
1 AGTTGTG
37429 ACTTTGCTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.10, C:0.00, G:0.51, T:0.39
Consensus pattern (17 bp):
AGTTGTGGGGTTGGAGT
Left flanking sequence: Indices 36888 -- 37387
CTCCTGGGTGCCGTCGGGCAGGGCGTCGTCGACGATGACGACCTCCCAGTCCAACTTGTGGGCGT
CCATGGTCTTGGCGAGGAGGTAGATGAGGATCGGAAGGTTCTTCCGCTCGTTGTACGTCGGGAGG
ATCACAGAGTACTTGTCGGTCATGTTGTGGCCACGTCTGACGCGTGGAAAAGAGCGCGAAGAACG
CGGTGGGTGAAAAATCGAGAGAGGGGGAAAACGGGAGAACGGGAAAAGGGGAAGAGGGTAGACGA
GGGTGTGGTAGTGGGTTGTGGGAAAGCGATGTGAGTTGGCTTGAGGTGTTTTACGGGCTCAATTG
GGTGGGAGAGGGGGTTGGAGAAGTGACCTACGTGTTTGGTAGGATTGTGTGCAGGTTACATAGAC
GAAAGGGTAGACAGTATAAGGTTAAGGGTTGATTGTCTAGGATGTTGGTATAGTCGGTTAGTATA
GTCGGTTAGGTGAACAAGGTGAAGGTAAATGAGTATGGGTGAGGC
Right flanking sequence: Indices 37429 -- 37928
ACTTTGCTTTGGATGTTACTAGATTGCAACACAGCGGTAGTCTCGTGGTCTATGGTACTGTGTGA
ATTGAAAAAGTAGGGAGGTGGTGGATTAAACTTGGTTCGGTGGTTGTCAGATCCATCTTCGTACA
TTCTAATCGATGAAATTTTGGTACTGTGGTATATGAGTTCCCCCATTTGGAGATGGTACTTAGAT
TGCCAAGTTTGAAAACAAGGATCATACCTCGGTACTATAAGTAGTCAGTTTGTTTCGGGGAGGAT
GTTGCAGTAGCGGTGTGGAGTGGTATGAAGTGGTGAGCACTAGAGGTGTGGAATGGTGGCATGAT
GAATTGAAAGGTGGAAATTTGTCGTAGAGTTAGGATGGAATGCACGGTTACAAGGTCCGATAAGG
GCCAACAGTGTTGAAGTGTTTTTACCTAGAACAGTAGCTCGGTAACTCAAGGCTATCTTACCAGC
CTAGTATGCTAATTTACCTCTACCCCCCTAATCTCATTGACGTTA
Found at i:39053 original size:2 final size:2
Alignment explanation
Indices: 39046--39071 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
39036 TTGAGCACCT
39046 CA CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA
39072 TCTAAACGTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.50, G:0.00, T:0.00
Consensus pattern (2 bp):
CA
Left flanking sequence: Indices 38546 -- 39045
AAAGAAGTTCATGGTGGTTACGGACGCGTCTGGGGGCTAATATGCGAGTGGTTGCGAGCGCGGGT
GTGCGATAAGAAGTGGGTGGTAATTACTAAGGCGGGGTGTGGTTTTGGGTGACCGGGTGGCGGTG
GTGGTTGAAATCACGGAAGAGAGGTTTGGTTAGTGTACCGGTGTCTGTAGTCATTATCAATGTGT
AGTTAATTCACAGCGTTCCTATGTCTAGAGTACTATAAGACTCAATAGTGCATAACGAGCCATTT
GAGTATCGCACCACTGTACTTACATCCACTACCCAAAGACCTTTCTTCCAACGGTCTAGACCTCC
ACCCGTCTTTACCTTAATTCCCGTTAGGTGCTGTCGGTGCCTTACATGTGCATCTGAGGTGCGTC
AAAGATGCTTCCTTCAGTCATTAAGGTTCCTCCACTCCTTCGGTGGTTTTTGGTAATGCACTCCT
CAGACTGATGTGCTACTCTAACTGAGGTACTCTACTTGAGCACCT
Right flanking sequence: Indices 39072 -- 39571
TCTAAACGTTTCTCATTAATACGTAACAGTCTAAAAGCCGCCAGCAACCGCTAGCGACCGAGTCG
GGCGGCACGCCGTGGGCGCGACGGACGGCCGGCTATGTCGTTCTTGGCTGGAAGCAACTCCAGCC
ACGCCGGGTCCTTGTCCACCGTTCGGGGCAGGTGCACTTTTTCGGAGGTGCGCAGGGGTTTGTAG
TGGGTGGTGGCCTCCTCCTCGTCATCGTCGCGGAACCGGCGGCTCCCCGCTAGACACGCCAGAAG
CTCAGGGTCCACGAGACTATCCAGCATGGGTGGCGGTGGCGACGGCGACTTTCTCTGCCGCCCCC
GTCCCGCAGGCTGGCTGGCAAATTCAAGCTTGGGGCCACTCGAGGTGATGGGCCGGGTTTGCACC
GGAGGTGCAGTGGTGAGGGAGGCCGGGTTCACCACCCCTGCATTGAACGCGGAGGTGTAGTGCGT
GGGTGCGCTGGTGAACTCGTGTGCGTGCGCCAGCACATTTGACTT
Found at i:40816 original size:12 final size:12
Alignment explanation
Indices: 40799--40825 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
40789 CTCTTCTTCT
40799 TTCACCTCACCC
1 TTCACCTCACCC
40811 TTCACCTCACCC
1 TTCACCTCACCC
40823 TTC
1 TTC
40826 CCTACATCCT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.15, C:0.56, G:0.00, T:0.30
Consensus pattern (12 bp):
TTCACCTCACCC
Left flanking sequence: Indices 40299 -- 40798
GGTTGGGCAGGTGTGGTGCTACAATAAGGCTGACGGTGTTATGGTGGTTGTAGGGCTTAGGCTGG
TGTTCGGCTTGTGGGGTCTTGTGGGGTTGGGTCGAGCCATGGATTGTCCGTGGGAGAATGTCGTG
GTTGTAACAAACAGTAGCTAGGAGCAAGAATCGTAATGAAAGGCTCGGTGTGTTATTGGTGATCC
TCGTCACCACACATCTTTGAAGGCCCAGTGTGTTACTAAGATGGCTCTTTAAACCCAAAGTATTC
TATTATCCTTCCACACATCGGTAATTCTCGAGTAACCAGTCTAGTAGCACTCAGGAACATATATA
TCCTGGGCCTGGCTATTTATATCCTGGGCCTACTTTCTGACTTACGTACAATGAGTCTCCAATAA
TTAACACAAACCCCATTTGCGTCAGGTTGTTCAAGGCTCTAATCTTTCTGATAATACGCACCTGA
TTAAGTCGTAATACAACAGCATATGCGTAACTTTGCTCTTCTTCT
Right flanking sequence: Indices 40826 -- 41325
CCTACATCCTCTTTTTCACCCTTCTTCCTGTTGCGACCCGACTTCGTCAGAAGCCAAGGGGCCAA
GGCACCGTTGGTACTTTTCTTGTCGTTCTTAGCATGGTGGATTTCTTACTTGGATCGAAGGGTAC
GAAATACGGTTGTAAAATTAGATGGAGTCCCAATAGCCAGTAGACTCTATTCTATAGCGTAAGAA
TATCCAGGAATGAAGTTTGTGTAACCTAGTAAGGTTTACATTCCTTTAACTACCTTATAGTTAGA
TGGCTACCGTGCTTGTTTAGAACCATAATCGGGTATGAGAGCCAACAAACTCTTTCAACCCCAAT
TATTCTGTTCCTTCCACTTCACCCTTCCCTTCTCCACTTCCCTTCACTCACCCTTCTTCCCTTCT
TCTTCCTTCTTCCTTATTACGTTATGCTATCATGCTATCTATGCTAAGGCAACGCCCGGTCGCGG
ATCTCGGTGATCTTTCTCGTCACCTCCACCACCGACCGCTCCACC
Found at i:44731 original size:26 final size:26
Alignment explanation
Indices: 44702--44752 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
44692 AGCCGCACTA
44702 AGCCGTCCGCGTGAGGCGATGAGATG
1 AGCCGTCCGCGTGAGGCGATGAGATG
*
44728 AGCCGTCCGCGTGGGGCGATGAGAT
1 AGCCGTCCGCGTGAGGCGATGAGAT
44753 TTAAGCCCAG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.18, C:0.24, G:0.43, T:0.16
Consensus pattern (26 bp):
AGCCGTCCGCGTGAGGCGATGAGATG
Left flanking sequence: Indices 44202 -- 44701
GGCAATTCCGCCCTCCTTGGGGCCCAACGAGTACACCAACTTGTTGCGCTGGAGGGCGCTCAAGA
AGACACACCGCAGCAGGGGGTCCGCCATCAACAAGTGGCCCTGGTTCGTGCGGCCGTACCCGTTT
TTCTGGAACGGCTGGCTCGCTTTTCGGCTCCACCGGTTGCCTGACCCGTACTCTACGAACGAAAC
AACACCAGAATCGCCGGTGAGTACCAACCAGTCGGTCCGCGCACCCACGGGACGCACCGACTGCA
TCTGCCAGATCACCCCGACCATGGGTTCGCGGAGAACGAGCCTCGGGGCCCCGGTATCGGCGTCT
ATTTTGTGCAATTCAAGGTAATGCCCGGTGCTCACAGCTAGCTGCTGCAGCAGGGTGTCGTCATC
GATGAAGTGACCCACCACCACCTGCTGCCAGTCCAGTGGCGGCTCCAACGTGAGGTTGTAGAGGT
GCATGGGGTGTTGATGGTGATGGAGATGAGATTTGAGCCGCACTA
Right flanking sequence: Indices 44753 -- 45252
TTAAGCCCAGAAGCCTCACGCGTGAGGCTGGGTTTTTGGTGGCTATATGCACTCTTTCTGCTAGA
GTCTATATGCAGTGTGTTGATCCTACGCGGTCGCGGTCGCGGTGGGTCGGAGGTATCGCTTGGCG
AAGGGATGACCAAACAAAGGTAAACAGACTACGAGTAAACAGACTACGAGTAAAACACAAATAAA
CACCCAGCAACCCAAGATAGCCGAGGTTGCTCAATGTCGCAAACGGAGCGGCTAGCACCACGACA
TTTCACCGCAACCCACCTAAACGACGAGCCTCGTATCCAGTGCCCGATTCGGCCGCGGTACGATT
GTGTACTGCCCCAGAGTTTCACCGACACAAATGATGTAATTAAGTATTGTGCCCGGCCAAACAAA
GAGTTTGAGGCTAATGGTGCCTCGTATTGCGTTTCTATTATCACGCACGACACATCGCCTAAAAC
AGAGGTGCTTCCGGCGGCATCTCAGATCGTACATATACACCACGT
Found at i:44922 original size:15 final size:15
Alignment explanation
Indices: 44902--44936 Score: 70
Period size: 15 Copynumber: 2.3 Consensus size: 15
44892 CCAAACAAAG
44902 GTAAACAGACTACGA
1 GTAAACAGACTACGA
44917 GTAAACAGACTACGA
1 GTAAACAGACTACGA
44932 GTAAA
1 GTAAA
44937 ACACAAATAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.49, C:0.17, G:0.20, T:0.14
Consensus pattern (15 bp):
GTAAACAGACTACGA
Left flanking sequence: Indices 44402 -- 44901
CAGAATCGCCGGTGAGTACCAACCAGTCGGTCCGCGCACCCACGGGACGCACCGACTGCATCTGC
CAGATCACCCCGACCATGGGTTCGCGGAGAACGAGCCTCGGGGCCCCGGTATCGGCGTCTATTTT
GTGCAATTCAAGGTAATGCCCGGTGCTCACAGCTAGCTGCTGCAGCAGGGTGTCGTCATCGATGA
AGTGACCCACCACCACCTGCTGCCAGTCCAGTGGCGGCTCCAACGTGAGGTTGTAGAGGTGCATG
GGGTGTTGATGGTGATGGAGATGAGATTTGAGCCGCACTAAGCCGTCCGCGTGAGGCGATGAGAT
GAGCCGTCCGCGTGGGGCGATGAGATTTAAGCCCAGAAGCCTCACGCGTGAGGCTGGGTTTTTGG
TGGCTATATGCACTCTTTCTGCTAGAGTCTATATGCAGTGTGTTGATCCTACGCGGTCGCGGTCG
CGGTGGGTCGGAGGTATCGCTTGGCGAAGGGATGACCAAACAAAG
Right flanking sequence: Indices 44937 -- 45436
ACACAAATAAACACCCAGCAACCCAAGATAGCCGAGGTTGCTCAATGTCGCAAACGGAGCGGCTA
GCACCACGACATTTCACCGCAACCCACCTAAACGACGAGCCTCGTATCCAGTGCCCGATTCGGCC
GCGGTACGATTGTGTACTGCCCCAGAGTTTCACCGACACAAATGATGTAATTAAGTATTGTGCCC
GGCCAAACAAAGAGTTTGAGGCTAATGGTGCCTCGTATTGCGTTTCTATTATCACGCACGACACA
TCGCCTAAAACAGAGGTGCTTCCGGCGGCATCTCAGATCGTACATATACACCACGTGGCATAGAC
AGCTGCCGATCGCCGTTTCATTTCATGTGGCACCGATTACCGTGTGGGGTTGTTTGTTAGTTGAT
CCGGAGTGCTGGGGCGGTTTTGGAGGTGCGATGAGTCGGACCACGTTGGCATTCTCTGATGATAC
ACCGCCATCGCGCAGACGCACGCACTCTGCGGCTGGGAACCAGTG
Found at i:46225 original size:19 final size:19
Alignment explanation
Indices: 46201--46238 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
46191 TTAGGCTTTG
46201 GGCCCACTAAACTCTAGCT
1 GGCCCACTAAACTCTAGCT
*
46220 GGCCCACTAGACTCTAGCT
1 GGCCCACTAAACTCTAGCT
46239 ACAATGGTTC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.24, C:0.37, G:0.18, T:0.21
Consensus pattern (19 bp):
GGCCCACTAAACTCTAGCT
Left flanking sequence: Indices 45701 -- 46200
AACCCAACAACAACCTGTCAGCGTCAGCAACGTAGCAAGGGCTAACGGGGTTGCCAACGGCCACA
AAGCGAGATAGGCGCCAGGAGGGAATGTTGCCCAGCTGTCCCCCGCGTAAACCGCAGCGAAACGC
CGGCAGAGCCCGTATTGTCCCGGGCAAACCCTAATGCGTGCCAGCATGGTTCACTTGCATTGTGG
GACTGCCAGAGCTGTGATGTCACCACCAGATATTATTCCACGCGGAGCCACGGCCTCCCGCTGGC
GGCTAGGGTGGTGCAGTTGCCTAGGTAAGCACGGATCGGCCATTGTGTGGCCCAATCGGGACGCC
AACAATGGATCGAACGAATCGGCTATTCCAAGGCAGCACCCTGCTGGGTGCGCTTGAATCCGGGC
CTGATGCTCTTCAAACCCTAAATCTCGGATAGTTTATTGGCTGGGGCAGGTGTGAGCGACGTAAC
CGACGTAACACAAACGCCCGGGTGATTGGCGACCGTTAGGCTTTG
Right flanking sequence: Indices 46239 -- 46738
ACAATGGTTCCTGGCGATCACACTACAATAGTGCCAGCAACAATGCCCCATACTCGCTGGGATAA
TATCGGGCAATTAAGGTTCACAACATACTCGATGAATATTATCAGTGGGCCACGGCTAGACGAAG
GTGTGCGGGGCGTGGGCGTGCTGGTGGTGGCTGTCTGGTCGTAATTGGCCGCATTATCGCCGAGG
TGGTGCGGTGTGCCCGGCAACTGGTTTTGTGTCTCGGGAAACTGTCTCCAGGCCCGATTGGGCAG
ACGACAACGCACACCAAACAAGCAAATTATAAACCGAAAACAGCACGGGGTTGATGGCCGTGACC
ATCACGTAGGTAATTAAAGGTGGCCACAAAATCAGAGATGCTGATATCGGGCCCAGTCGTTGGGT
AGTGCAATTGACCCGGAAGGTACCCTACAGGTATGTACGCTGGTCTTCTATCTCGTGGAGAATGG
ACCCCTAAGCTACCCCTGGCTAGCCACAGTTTCAACTAAGCCCCT
Found at i:47070 original size:22 final size:22
Alignment explanation
Indices: 47040--47119 Score: 90
Period size: 21 Copynumber: 3.5 Consensus size: 22
47030 GTCACTCTCA
47040 CCTACCAAATCACCCTTAATCAC
1 CCTA-CAAATCACCCTTAATCAC
* *
47063 CCTACAAAACACCCTCAAT-AC
1 CCTACAAATCACCCTTAATCAC
*
47084 CCTTCAAATCACCCTTCAAATCAC
1 CCTACAAATCACCCTT--AATCAC
*
47108 CCTTCAAATCAC
1 CCTACAAATCAC
47120 TCTGATTTTG
Statistics
Matches: 49, Mismatches: 5, Indels: 5
0.83 0.08 0.08
Matches are distributed among these distances:
21 15 0.31
22 13 0.27
23 7 0.14
24 14 0.29
ACGTcount: A:0.36, C:0.42, G:0.00, T:0.21
Consensus pattern (22 bp):
CCTACAAATCACCCTTAATCAC
Left flanking sequence: Indices 46540 -- 47039
AGCACGGGGTTGATGGCCGTGACCATCACGTAGGTAATTAAAGGTGGCCACAAAATCAGAGATGC
TGATATCGGGCCCAGTCGTTGGGTAGTGCAATTGACCCGGAAGGTACCCTACAGGTATGTACGCT
GGTCTTCTATCTCGTGGAGAATGGACCCCTAAGCTACCCCTGGCTAGCCACAGTTTCAACTAAGC
CCCTGTCACGAGCGATTGCCTACGACCCGTGGTGTCCCGCTTTTCCCCCGCCCCCTCAAAATATG
TCTATGCCCGCCTTGCCCCTCGTAACTACGATAGCTTGACGGTCGTGTGGAGCGGGGTGGAAGGG
GGGAGCAGCGGGGAGGCTATTGTACCAGCCTGACGAAGCTAGGAGAACCCGTAGAACCACTCAAT
TGCACCAGTAGCCTCAATGCCCAAATCACCTTTCCAAATCACCACCAAATCACTCCGATTTTGTG
TTACTGTAACATCTCACTCTCTCCAGATACTCTCAGTCACTCTCA
Right flanking sequence: Indices 47120 -- 47619
TCTGATTTTGTGTCACTGTAACCTCTCATTTAATTACTCTCACCAGACACTCAACAGTCTTTCAG
TCATTCTCACCACCAATTCTCACCAATTCTCACCACCAACTCACCAATACCCTGAATCAACCACT
CCTACAAACCCCGCCATTCCAACCGCTCTCTCTCCTCCACGCACCCCTGTGCCTTCTCCTGCCTT
CTCCTGCTCTCCACAGCCTCCCACAGCCTTCGTTGGTAGCGCTGGCCCACCACCTGATCCGCGAT
GGAACACAAACGCGTCCCACTCCACCGCCACCGGCCCAAAAAACCCACCTAAAACGCCAATCCCC
AGCCCCACCACCCCACCCTCTGACCACCCACCGCCTCTCCCACCCCCATAACCCCCTCCACTGCC
CTCTTCTCCGTCCTTCCCTTTCCCGTCCTCCTGGTAGCGCACAAACGCGTACCCATATATGCACC
ACCTCCACCACCACCACCTCCCCAGACAGGCCCCGCCAACATGGA
Found at i:47116 original size:12 final size:12
Alignment explanation
Indices: 47045--47119 Score: 97
Period size: 12 Copynumber: 6.7 Consensus size: 12
47035 TCTCACCTAC
47045 CAAATCACCCTT
1 CAAATCACCCTT
*
47057 --AATCACCCTA
1 CAAATCACCCTT
*
47067 CAAAACACCC-T
1 CAAATCACCCTT
47078 C-AAT-ACCCTT
1 CAAATCACCCTT
47088 CAAATCACCCTT
1 CAAATCACCCTT
47100 CAAATCACCCTT
1 CAAATCACCCTT
47112 CAAATCAC
1 CAAATCAC
47120 TCTGATTTTG
Statistics
Matches: 54, Mismatches: 4, Indels: 10
0.79 0.06 0.15
Matches are distributed among these distances:
9 4 0.07
10 13 0.24
11 4 0.07
12 33 0.61
ACGTcount: A:0.37, C:0.41, G:0.00, T:0.21
Consensus pattern (12 bp):
CAAATCACCCTT
Left flanking sequence: Indices 46545 -- 47044
GGGGTTGATGGCCGTGACCATCACGTAGGTAATTAAAGGTGGCCACAAAATCAGAGATGCTGATA
TCGGGCCCAGTCGTTGGGTAGTGCAATTGACCCGGAAGGTACCCTACAGGTATGTACGCTGGTCT
TCTATCTCGTGGAGAATGGACCCCTAAGCTACCCCTGGCTAGCCACAGTTTCAACTAAGCCCCTG
TCACGAGCGATTGCCTACGACCCGTGGTGTCCCGCTTTTCCCCCGCCCCCTCAAAATATGTCTAT
GCCCGCCTTGCCCCTCGTAACTACGATAGCTTGACGGTCGTGTGGAGCGGGGTGGAAGGGGGGAG
CAGCGGGGAGGCTATTGTACCAGCCTGACGAAGCTAGGAGAACCCGTAGAACCACTCAATTGCAC
CAGTAGCCTCAATGCCCAAATCACCTTTCCAAATCACCACCAAATCACTCCGATTTTGTGTTACT
GTAACATCTCACTCTCTCCAGATACTCTCAGTCACTCTCACCTAC
Right flanking sequence: Indices 47120 -- 47619
TCTGATTTTGTGTCACTGTAACCTCTCATTTAATTACTCTCACCAGACACTCAACAGTCTTTCAG
TCATTCTCACCACCAATTCTCACCAATTCTCACCACCAACTCACCAATACCCTGAATCAACCACT
CCTACAAACCCCGCCATTCCAACCGCTCTCTCTCCTCCACGCACCCCTGTGCCTTCTCCTGCCTT
CTCCTGCTCTCCACAGCCTCCCACAGCCTTCGTTGGTAGCGCTGGCCCACCACCTGATCCGCGAT
GGAACACAAACGCGTCCCACTCCACCGCCACCGGCCCAAAAAACCCACCTAAAACGCCAATCCCC
AGCCCCACCACCCCACCCTCTGACCACCCACCGCCTCTCCCACCCCCATAACCCCCTCCACTGCC
CTCTTCTCCGTCCTTCCCTTTCCCGTCCTCCTGGTAGCGCACAAACGCGTACCCATATATGCACC
ACCTCCACCACCACCACCTCCCCAGACAGGCCCCGCCAACATGGA
Found at i:47205 original size:13 final size:13
Alignment explanation
Indices: 47187--47223 Score: 53
Period size: 13 Copynumber: 3.1 Consensus size: 13
47177 TCTTTCAGTC
47187 ATTCTCACCACCA
1 ATTCTCACCACCA
47200 ATTCT---CACCA
1 ATTCTCACCACCA
47210 ATTCTCACCACCA
1 ATTCTCACCACCA
47223 A
1 A
47224 CTCACCAATA
Statistics
Matches: 21, Mismatches: 0, Indels: 6
0.78 0.00 0.22
Matches are distributed among these distances:
10 10 0.48
13 11 0.52
ACGTcount: A:0.32, C:0.43, G:0.00, T:0.24
Consensus pattern (13 bp):
ATTCTCACCACCA
Left flanking sequence: Indices 46687 -- 47186
AGAATGGACCCCTAAGCTACCCCTGGCTAGCCACAGTTTCAACTAAGCCCCTGTCACGAGCGATT
GCCTACGACCCGTGGTGTCCCGCTTTTCCCCCGCCCCCTCAAAATATGTCTATGCCCGCCTTGCC
CCTCGTAACTACGATAGCTTGACGGTCGTGTGGAGCGGGGTGGAAGGGGGGAGCAGCGGGGAGGC
TATTGTACCAGCCTGACGAAGCTAGGAGAACCCGTAGAACCACTCAATTGCACCAGTAGCCTCAA
TGCCCAAATCACCTTTCCAAATCACCACCAAATCACTCCGATTTTGTGTTACTGTAACATCTCAC
TCTCTCCAGATACTCTCAGTCACTCTCACCTACCAAATCACCCTTAATCACCCTACAAAACACCC
TCAATACCCTTCAAATCACCCTTCAAATCACCCTTCAAATCACTCTGATTTTGTGTCACTGTAAC
CTCTCATTTAATTACTCTCACCAGACACTCAACAGTCTTTCAGTC
Right flanking sequence: Indices 47224 -- 47723
CTCACCAATACCCTGAATCAACCACTCCTACAAACCCCGCCATTCCAACCGCTCTCTCTCCTCCA
CGCACCCCTGTGCCTTCTCCTGCCTTCTCCTGCTCTCCACAGCCTCCCACAGCCTTCGTTGGTAG
CGCTGGCCCACCACCTGATCCGCGATGGAACACAAACGCGTCCCACTCCACCGCCACCGGCCCAA
AAAACCCACCTAAAACGCCAATCCCCAGCCCCACCACCCCACCCTCTGACCACCCACCGCCTCTC
CCACCCCCATAACCCCCTCCACTGCCCTCTTCTCCGTCCTTCCCTTTCCCGTCCTCCTGGTAGCG
CACAAACGCGTACCCATATATGCACCACCTCCACCACCACCACCTCCCCAGACAGGCCCCGCCAA
CATGGACGTGTCTACCCTCACGGTGACTACCGGCGAGGGCAAACGCAAGCTCATCAACCACCTGT
ACCGGGTGCTCCGCAAAATCGGCCAGGGCCAGTACGGGAAAGTGC
Found at i:47210 original size:10 final size:10
Alignment explanation
Indices: 47195--47219 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
47185 TCATTCTCAC
47195 CACCAATTCT
1 CACCAATTCT
47205 CACCAATTCT
1 CACCAATTCT
47215 CACCA
1 CACCA
47220 CCAACTCACC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.32, C:0.44, G:0.00, T:0.24
Consensus pattern (10 bp):
CACCAATTCT
Left flanking sequence: Indices 46695 -- 47194
CCCCTAAGCTACCCCTGGCTAGCCACAGTTTCAACTAAGCCCCTGTCACGAGCGATTGCCTACGA
CCCGTGGTGTCCCGCTTTTCCCCCGCCCCCTCAAAATATGTCTATGCCCGCCTTGCCCCTCGTAA
CTACGATAGCTTGACGGTCGTGTGGAGCGGGGTGGAAGGGGGGAGCAGCGGGGAGGCTATTGTAC
CAGCCTGACGAAGCTAGGAGAACCCGTAGAACCACTCAATTGCACCAGTAGCCTCAATGCCCAAA
TCACCTTTCCAAATCACCACCAAATCACTCCGATTTTGTGTTACTGTAACATCTCACTCTCTCCA
GATACTCTCAGTCACTCTCACCTACCAAATCACCCTTAATCACCCTACAAAACACCCTCAATACC
CTTCAAATCACCCTTCAAATCACCCTTCAAATCACTCTGATTTTGTGTCACTGTAACCTCTCATT
TAATTACTCTCACCAGACACTCAACAGTCTTTCAGTCATTCTCAC
Right flanking sequence: Indices 47220 -- 47719
CCAACTCACCAATACCCTGAATCAACCACTCCTACAAACCCCGCCATTCCAACCGCTCTCTCTCC
TCCACGCACCCCTGTGCCTTCTCCTGCCTTCTCCTGCTCTCCACAGCCTCCCACAGCCTTCGTTG
GTAGCGCTGGCCCACCACCTGATCCGCGATGGAACACAAACGCGTCCCACTCCACCGCCACCGGC
CCAAAAAACCCACCTAAAACGCCAATCCCCAGCCCCACCACCCCACCCTCTGACCACCCACCGCC
TCTCCCACCCCCATAACCCCCTCCACTGCCCTCTTCTCCGTCCTTCCCTTTCCCGTCCTCCTGGT
AGCGCACAAACGCGTACCCATATATGCACCACCTCCACCACCACCACCTCCCCAGACAGGCCCCG
CCAACATGGACGTGTCTACCCTCACGGTGACTACCGGCGAGGGCAAACGCAAGCTCATCAACCAC
CTGTACCGGGTGCTCCGCAAAATCGGCCAGGGCCAGTACGGGAAA
Found at i:47213 original size:23 final size:21
Alignment explanation
Indices: 47187--47232 Score: 74
Period size: 23 Copynumber: 2.1 Consensus size: 21
47177 TCTTTCAGTC
47187 ATTCTCACCACCAATTCTCACCA
1 ATTCTCACCACCAA--CTCACCA
47210 ATTCTCACCACCAACTCACCA
1 ATTCTCACCACCAACTCACCA
47231 AT
1 AT
47233 ACCCTGAATC
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
21 9 0.39
23 14 0.61
ACGTcount: A:0.33, C:0.43, G:0.00, T:0.24
Consensus pattern (21 bp):
ATTCTCACCACCAACTCACCA
Left flanking sequence: Indices 46687 -- 47186
AGAATGGACCCCTAAGCTACCCCTGGCTAGCCACAGTTTCAACTAAGCCCCTGTCACGAGCGATT
GCCTACGACCCGTGGTGTCCCGCTTTTCCCCCGCCCCCTCAAAATATGTCTATGCCCGCCTTGCC
CCTCGTAACTACGATAGCTTGACGGTCGTGTGGAGCGGGGTGGAAGGGGGGAGCAGCGGGGAGGC
TATTGTACCAGCCTGACGAAGCTAGGAGAACCCGTAGAACCACTCAATTGCACCAGTAGCCTCAA
TGCCCAAATCACCTTTCCAAATCACCACCAAATCACTCCGATTTTGTGTTACTGTAACATCTCAC
TCTCTCCAGATACTCTCAGTCACTCTCACCTACCAAATCACCCTTAATCACCCTACAAAACACCC
TCAATACCCTTCAAATCACCCTTCAAATCACCCTTCAAATCACTCTGATTTTGTGTCACTGTAAC
CTCTCATTTAATTACTCTCACCAGACACTCAACAGTCTTTCAGTC
Right flanking sequence: Indices 47233 -- 47732
ACCCTGAATCAACCACTCCTACAAACCCCGCCATTCCAACCGCTCTCTCTCCTCCACGCACCCCT
GTGCCTTCTCCTGCCTTCTCCTGCTCTCCACAGCCTCCCACAGCCTTCGTTGGTAGCGCTGGCCC
ACCACCTGATCCGCGATGGAACACAAACGCGTCCCACTCCACCGCCACCGGCCCAAAAAACCCAC
CTAAAACGCCAATCCCCAGCCCCACCACCCCACCCTCTGACCACCCACCGCCTCTCCCACCCCCA
TAACCCCCTCCACTGCCCTCTTCTCCGTCCTTCCCTTTCCCGTCCTCCTGGTAGCGCACAAACGC
GTACCCATATATGCACCACCTCCACCACCACCACCTCCCCAGACAGGCCCCGCCAACATGGACGT
GTCTACCCTCACGGTGACTACCGGCGAGGGCAAACGCAAGCTCATCAACCACCTGTACCGGGTGC
TCCGCAAAATCGGCCAGGGCCAGTACGGGAAAGTGCTTTTGGCCC
Found at i:49759 original size:21 final size:21
Alignment explanation
Indices: 49742--49782 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
49732 GCGGCTGAGC
49742 GCACTGGTGGCCCTGCTGGCG
1 GCACTGGTGGCCCTGCTGGCG
* *
49763 GCTCTGGTGGCGCTGCTGGC
1 GCACTGGTGGCCCTGCTGGC
49783 CCGGCTGCTG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.02, C:0.32, G:0.44, T:0.22
Consensus pattern (21 bp):
GCACTGGTGGCCCTGCTGGCG
Left flanking sequence: Indices 49242 -- 49741
TGACCACCCCGACGCGGCTTTCGCCGCAGAAGGGCGTCTACCTGCATTCCCACGGCAGCACCTCG
AGTCTCCCCCGGTCGCGCCAGGGGTCCACCAACACCCCACCGGCCCCCGTCACCATCGGAGCACG
CTCCCCCGGCACGTTCGCCGGGCTCTTCAGTCCCGCACGCAAGTATTTCAGCCGCAGCCGTCGCG
GGTCGGCGAGCTCGGTCAGCTCCAAGGACGCGGTGGCGGGCCCAGCGGACTCGCTCGGGTCTGGC
TACGCGGGCAGCGGGCTCAATCCCGACCAGGTGGCGGCTCCGCCCGGGCTGGGCCGCAGTTCCGC
CTCCCAGACCGCGTTGAACGCCCCCCAGGTGGCCCTACCGACGATTCTGGCGCTCTCGCTGCCGC
CTACGAAGCAGCGCAAGCCGGTGACCGACTTGGCACCACCGCCCGCGTTCGCCATAGCCGCGCTG
TTGGGCAAACAGCGGCTGGGCCTGGTGCTGCTGGCGCGGCTGAGC
Right flanking sequence: Indices 49783 -- 50282
CCGGCTGCTGCCCCAGGTGCCGTCGCTGCCGTTTGGAGGCGCGCTCAACCGCATCACCCTGCTGC
TGCTGCTCAATCTCAACGCCTACCTCACCGACGGGTGGGAGCCCCGCCCGCTCGCGCCTGCCTCG
GGGGACGCGGACGCTACATTCATAGCCAACGTCGACAGCGACGACGGCGACTCCGACGACGACAC
CCCGCCGCCGCCGCCTCCGCACGCCACGCTGATGGCAGATTACCTCTCGCGGCTTCCCTAACTCT
TGCATATATTAGTAGAATCTTCATAGTGTACCATAGTGTGATGGTAGACTACCATTGTCTGATAT
TCAGTAGAATCTACCATAGTCTACCATAGTCTGATATTTAATAGAAACTACCATAGTCTACCAAG
TCTGATAGTAGAATCTCCATAGTCTACCATAGTCTGATAGTAGAATCTCCATAGTCCACCATAGT
CTGATATTTAATAGAATCTACCATAGTCTTCCAGAGTCTGATTTT
Found at i:50141 original size:37 final size:36
Alignment explanation
Indices: 50091--50303 Score: 239
Period size: 37 Copynumber: 6.1 Consensus size: 36
50081 TGATGGTAGA
*
50091 CTACCATTGTCTGATATTCAGTAGAATCTACCATAGT
1 CTACCATAGTCTGATATT-AGTAGAATCTACCATAGT
* *
50128 CTACCATAGTCTGATATTTAATAGAAACTACCATAGT
1 CTACCATAGTCTGATA-TTAGTAGAATCTACCATAGT
50165 CTACCA-AGTCTG--A-TAGTAGAATCT-CCATAGT
1 CTACCATAGTCTGATATTAGTAGAATCTACCATAGT
50196 CTACCATAGTCTG--A-TAGTAGAATCT-CCATAGT
1 CTACCATAGTCTGATATTAGTAGAATCTACCATAGT
* *
50228 CCACCATAGTCTGATATTTAATAGAATCTACCATAGT
1 CTACCATAGTCTGATA-TTAGTAGAATCTACCATAGT
* * *
50265 CTTCCAGAGTCTGATTTTTCAG-AGAATCTACCATAGT
1 CTACCATAGTCTGA-TATT-AGTAGAATCTACCATAGT
50302 CT
1 CT
50304 GAGATTTCGT
Statistics
Matches: 155, Mismatches: 12, Indels: 18
0.84 0.06 0.10
Matches are distributed among these distances:
31 13 0.08
32 46 0.30
34 2 0.01
36 16 0.10
37 74 0.48
38 4 0.03
ACGTcount: A:0.32, C:0.22, G:0.14, T:0.33
Consensus pattern (36 bp):
CTACCATAGTCTGATATTAGTAGAATCTACCATAGT
Left flanking sequence: Indices 49591 -- 50090
CCAGGTGGCCCTACCGACGATTCTGGCGCTCTCGCTGCCGCCTACGAAGCAGCGCAAGCCGGTGA
CCGACTTGGCACCACCGCCCGCGTTCGCCATAGCCGCGCTGTTGGGCAAACAGCGGCTGGGCCTG
GTGCTGCTGGCGCGGCTGAGCGCACTGGTGGCCCTGCTGGCGGCTCTGGTGGCGCTGCTGGCCCG
GCTGCTGCCCCAGGTGCCGTCGCTGCCGTTTGGAGGCGCGCTCAACCGCATCACCCTGCTGCTGC
TGCTCAATCTCAACGCCTACCTCACCGACGGGTGGGAGCCCCGCCCGCTCGCGCCTGCCTCGGGG
GACGCGGACGCTACATTCATAGCCAACGTCGACAGCGACGACGGCGACTCCGACGACGACACCCC
GCCGCCGCCGCCTCCGCACGCCACGCTGATGGCAGATTACCTCTCGCGGCTTCCCTAACTCTTGC
ATATATTAGTAGAATCTTCATAGTGTACCATAGTGTGATGGTAGA
Right flanking sequence: Indices 50304 -- 50803
GAGATTTCGTAAAGTCTACCATATTCTGACATTTCGTAAAATCTACCATCGTCTGACATTTTGTA
GAATCTGTGCATAGTCTGACTGTCGGAAAACCGACACGACACGGCAACCGAACGAGGACACAGCC
AACTTGGACGAGGCTGAAATCGTAGAAGTGTGTCAGAAGTGTGACCGAAGTGTGACCAAGTGTGA
CCGCTAATAGAGCTGGAATTGTTGGAATTGCTGGAATTGGCTGGATTTGGGCTTGCTGACTGTGC
CTACTGGAATTGTGCTTCTGGAACGGTGCTTAGTGGAATTGTGCTTAGTGGAATTGTATACTGGA
ATTGTGTGCTTACATTGGGCCTACTGATTAAGTTTTGTGGAATAGTGCTTACGAATTGTATACTG
GAATTATTTACTAGAATTGTTACTGGAATTGTGACTGGAATTGTACTGGAATTTTGTACTATAAT
TGTTACTGCAATTGAGCGTACGATTGTGTGCTCTTGTGCTTCGGA
Found at i:50207 original size:32 final size:33
Alignment explanation
Indices: 50110--50279 Score: 193
Period size: 32 Copynumber: 5.0 Consensus size: 33
50100 TCTGATATTC
50110 AGTAGAATCTACCATAGTCTACCATAGTCTGATATTT
1 AGTAGAATCTACCATAGTCTACCATAGTCTG--A--T
* *
50147 AATAGAAACTACCATAGTCTACCA-AGTCTGAT
1 AGTAGAATCTACCATAGTCTACCATAGTCTGAT
50179 AGTAGAATCT-CCATAGTCTACCATAGTCTGAT
1 AGTAGAATCTACCATAGTCTACCATAGTCTGAT
*
50211 AGTAGAATCT-CCATAGTCCACCATAGTCTGATATTT
1 AGTAGAATCTACCATAGTCTACCATAGTCTG--A--T
* * *
50247 AATAGAATCTACCATAGTCTTCCAGAGTCTGAT
1 AGTAGAATCTACCATAGTCTACCATAGTCTGAT
50280 TTTTCAGAGA
Statistics
Matches: 118, Mismatches: 9, Indels: 16
0.83 0.06 0.11
Matches are distributed among these distances:
31 13 0.11
32 46 0.39
33 1 0.01
34 2 0.02
35 1 0.01
36 16 0.14
37 39 0.33
ACGTcount: A:0.34, C:0.21, G:0.14, T:0.31
Consensus pattern (33 bp):
AGTAGAATCTACCATAGTCTACCATAGTCTGAT
Left flanking sequence: Indices 49610 -- 50109
ATTCTGGCGCTCTCGCTGCCGCCTACGAAGCAGCGCAAGCCGGTGACCGACTTGGCACCACCGCC
CGCGTTCGCCATAGCCGCGCTGTTGGGCAAACAGCGGCTGGGCCTGGTGCTGCTGGCGCGGCTGA
GCGCACTGGTGGCCCTGCTGGCGGCTCTGGTGGCGCTGCTGGCCCGGCTGCTGCCCCAGGTGCCG
TCGCTGCCGTTTGGAGGCGCGCTCAACCGCATCACCCTGCTGCTGCTGCTCAATCTCAACGCCTA
CCTCACCGACGGGTGGGAGCCCCGCCCGCTCGCGCCTGCCTCGGGGGACGCGGACGCTACATTCA
TAGCCAACGTCGACAGCGACGACGGCGACTCCGACGACGACACCCCGCCGCCGCCGCCTCCGCAC
GCCACGCTGATGGCAGATTACCTCTCGCGGCTTCCCTAACTCTTGCATATATTAGTAGAATCTTC
ATAGTGTACCATAGTGTGATGGTAGACTACCATTGTCTGATATTC
Right flanking sequence: Indices 50280 -- 50779
TTTTCAGAGAATCTACCATAGTCTGAGATTTCGTAAAGTCTACCATATTCTGACATTTCGTAAAA
TCTACCATCGTCTGACATTTTGTAGAATCTGTGCATAGTCTGACTGTCGGAAAACCGACACGACA
CGGCAACCGAACGAGGACACAGCCAACTTGGACGAGGCTGAAATCGTAGAAGTGTGTCAGAAGTG
TGACCGAAGTGTGACCAAGTGTGACCGCTAATAGAGCTGGAATTGTTGGAATTGCTGGAATTGGC
TGGATTTGGGCTTGCTGACTGTGCCTACTGGAATTGTGCTTCTGGAACGGTGCTTAGTGGAATTG
TGCTTAGTGGAATTGTATACTGGAATTGTGTGCTTACATTGGGCCTACTGATTAAGTTTTGTGGA
ATAGTGCTTACGAATTGTATACTGGAATTATTTACTAGAATTGTTACTGGAATTGTGACTGGAAT
TGTACTGGAATTTTGTACTATAATTGTTACTGCAATTGAGCGTAC
Found at i:50311 original size:27 final size:26
Alignment explanation
Indices: 50289--50388 Score: 110
Period size: 27 Copynumber: 3.7 Consensus size: 26
50279 TTTTTCAGAG
*
50289 AATCTACCATAGTCTGAGATTTCGTA
1 AATCTACCATAGTCTGACATTTCGTA
*
50315 AAGTCTACCATATTCTGACATTTCGTAA
1 AA-TCTACCATAGTCTGACATTTCGT-A
* *
50343 AATCTACCATCGTCTGACATTTTGTA
1 AATCTACCATAGTCTGACATTTCGTA
**
50369 GAATCTGTGCATAGTCTGAC
1 -AATCT-ACCATAGTCTGAC
50389 TGTCGGAAAA
Statistics
Matches: 62, Mismatches: 8, Indels: 6
0.82 0.11 0.08
Matches are distributed among these distances:
26 3 0.05
27 46 0.74
28 13 0.21
ACGTcount: A:0.29, C:0.21, G:0.15, T:0.35
Consensus pattern (26 bp):
AATCTACCATAGTCTGACATTTCGTA
Left flanking sequence: Indices 49789 -- 50288
GCTGCCCCAGGTGCCGTCGCTGCCGTTTGGAGGCGCGCTCAACCGCATCACCCTGCTGCTGCTGC
TCAATCTCAACGCCTACCTCACCGACGGGTGGGAGCCCCGCCCGCTCGCGCCTGCCTCGGGGGAC
GCGGACGCTACATTCATAGCCAACGTCGACAGCGACGACGGCGACTCCGACGACGACACCCCGCC
GCCGCCGCCTCCGCACGCCACGCTGATGGCAGATTACCTCTCGCGGCTTCCCTAACTCTTGCATA
TATTAGTAGAATCTTCATAGTGTACCATAGTGTGATGGTAGACTACCATTGTCTGATATTCAGTA
GAATCTACCATAGTCTACCATAGTCTGATATTTAATAGAAACTACCATAGTCTACCAAGTCTGAT
AGTAGAATCTCCATAGTCTACCATAGTCTGATAGTAGAATCTCCATAGTCCACCATAGTCTGATA
TTTAATAGAATCTACCATAGTCTTCCAGAGTCTGATTTTTCAGAG
Right flanking sequence: Indices 50389 -- 50888
TGTCGGAAAACCGACACGACACGGCAACCGAACGAGGACACAGCCAACTTGGACGAGGCTGAAAT
CGTAGAAGTGTGTCAGAAGTGTGACCGAAGTGTGACCAAGTGTGACCGCTAATAGAGCTGGAATT
GTTGGAATTGCTGGAATTGGCTGGATTTGGGCTTGCTGACTGTGCCTACTGGAATTGTGCTTCTG
GAACGGTGCTTAGTGGAATTGTGCTTAGTGGAATTGTATACTGGAATTGTGTGCTTACATTGGGC
CTACTGATTAAGTTTTGTGGAATAGTGCTTACGAATTGTATACTGGAATTATTTACTAGAATTGT
TACTGGAATTGTGACTGGAATTGTACTGGAATTTTGTACTATAATTGTTACTGCAATTGAGCGTA
CGATTGTGTGCTCTTGTGCTTCGGAAAAACATTGCAACCCAACGGTTTTGTGATTTGGTTTTGTG
ACTTGTTTTTGTGATTTTGCAGCCAAAACAAACAGTGGCTTGTGT
Found at i:50496 original size:10 final size:11
Alignment explanation
Indices: 50458--50501 Score: 63
Period size: 11 Copynumber: 4.1 Consensus size: 11
50448 TGAAATCGTA
* *
50458 GAAGTGTGTCA
1 GAAGTGTGACC
50469 GAAGTGTGACC
1 GAAGTGTGACC
50480 GAAGTGTGACC
1 GAAGTGTGACC
50491 -AAGTGTGACC
1 GAAGTGTGACC
50501 G
1 G
50502 CTAATAGAGC
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
10 10 0.33
11 20 0.67
ACGTcount: A:0.27, C:0.16, G:0.36, T:0.20
Consensus pattern (11 bp):
GAAGTGTGACC
Left flanking sequence: Indices 49958 -- 50457
GGCGACTCCGACGACGACACCCCGCCGCCGCCGCCTCCGCACGCCACGCTGATGGCAGATTACCT
CTCGCGGCTTCCCTAACTCTTGCATATATTAGTAGAATCTTCATAGTGTACCATAGTGTGATGGT
AGACTACCATTGTCTGATATTCAGTAGAATCTACCATAGTCTACCATAGTCTGATATTTAATAGA
AACTACCATAGTCTACCAAGTCTGATAGTAGAATCTCCATAGTCTACCATAGTCTGATAGTAGAA
TCTCCATAGTCCACCATAGTCTGATATTTAATAGAATCTACCATAGTCTTCCAGAGTCTGATTTT
TCAGAGAATCTACCATAGTCTGAGATTTCGTAAAGTCTACCATATTCTGACATTTCGTAAAATCT
ACCATCGTCTGACATTTTGTAGAATCTGTGCATAGTCTGACTGTCGGAAAACCGACACGACACGG
CAACCGAACGAGGACACAGCCAACTTGGACGAGGCTGAAATCGTA
Right flanking sequence: Indices 50502 -- 51001
CTAATAGAGCTGGAATTGTTGGAATTGCTGGAATTGGCTGGATTTGGGCTTGCTGACTGTGCCTA
CTGGAATTGTGCTTCTGGAACGGTGCTTAGTGGAATTGTGCTTAGTGGAATTGTATACTGGAATT
GTGTGCTTACATTGGGCCTACTGATTAAGTTTTGTGGAATAGTGCTTACGAATTGTATACTGGAA
TTATTTACTAGAATTGTTACTGGAATTGTGACTGGAATTGTACTGGAATTTTGTACTATAATTGT
TACTGCAATTGAGCGTACGATTGTGTGCTCTTGTGCTTCGGAAAAACATTGCAACCCAACGGTTT
TGTGATTTGGTTTTGTGACTTGTTTTTGTGATTTTGCAGCCAAAACAAACAGTGGCTTGTGTCAT
CTAACCATGTAACCCAGAGGCTTAACCCAGCTCATCGCCACGCCTTACTCGCAACCACCTTCCCG
GGCGGACGCTGGCGAAGGGTGGCATTAGACCGTGCTGGGCACATG
Found at i:50526 original size:9 final size:9
Alignment explanation
Indices: 50510--50543 Score: 50
Period size: 9 Copynumber: 3.7 Consensus size: 9
50500 CGCTAATAGA
50510 GCTGGAATT
1 GCTGGAATT
*
50519 GTTGGAATT
1 GCTGGAATT
50528 GCTGGAATT
1 GCTGGAATT
50537 GGCTGGA
1 -GCTGGA
50544 TTTGGGCTTG
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
9 16 0.73
10 6 0.27
ACGTcount: A:0.21, C:0.09, G:0.38, T:0.32
Consensus pattern (9 bp):
GCTGGAATT
Left flanking sequence: Indices 50010 -- 50509
TGGCAGATTACCTCTCGCGGCTTCCCTAACTCTTGCATATATTAGTAGAATCTTCATAGTGTACC
ATAGTGTGATGGTAGACTACCATTGTCTGATATTCAGTAGAATCTACCATAGTCTACCATAGTCT
GATATTTAATAGAAACTACCATAGTCTACCAAGTCTGATAGTAGAATCTCCATAGTCTACCATAG
TCTGATAGTAGAATCTCCATAGTCCACCATAGTCTGATATTTAATAGAATCTACCATAGTCTTCC
AGAGTCTGATTTTTCAGAGAATCTACCATAGTCTGAGATTTCGTAAAGTCTACCATATTCTGACA
TTTCGTAAAATCTACCATCGTCTGACATTTTGTAGAATCTGTGCATAGTCTGACTGTCGGAAAAC
CGACACGACACGGCAACCGAACGAGGACACAGCCAACTTGGACGAGGCTGAAATCGTAGAAGTGT
GTCAGAAGTGTGACCGAAGTGTGACCAAGTGTGACCGCTAATAGA
Right flanking sequence: Indices 50544 -- 51043
TTTGGGCTTGCTGACTGTGCCTACTGGAATTGTGCTTCTGGAACGGTGCTTAGTGGAATTGTGCT
TAGTGGAATTGTATACTGGAATTGTGTGCTTACATTGGGCCTACTGATTAAGTTTTGTGGAATAG
TGCTTACGAATTGTATACTGGAATTATTTACTAGAATTGTTACTGGAATTGTGACTGGAATTGTA
CTGGAATTTTGTACTATAATTGTTACTGCAATTGAGCGTACGATTGTGTGCTCTTGTGCTTCGGA
AAAACATTGCAACCCAACGGTTTTGTGATTTGGTTTTGTGACTTGTTTTTGTGATTTTGCAGCCA
AAACAAACAGTGGCTTGTGTCATCTAACCATGTAACCCAGAGGCTTAACCCAGCTCATCGCCACG
CCTTACTCGCAACCACCTTCCCGGGCGGACGCTGGCGAAGGGTGGCATTAGACCGTGCTGGGCAC
ATGGACCCACTGGTGCGCCTCCCAAGCCCCCCCAAGCCCCCCACG
Found at i:50607 original size:15 final size:15
Alignment explanation
Indices: 50568--50620 Score: 72
Period size: 15 Copynumber: 3.6 Consensus size: 15
50558 CTGTGCCTAC
*
50568 TGGAATTGTGCTT-C
1 TGGAATTGTGCTTAG
**
50582 TGGAACGGTGCTTAG
1 TGGAATTGTGCTTAG
50597 TGGAATTGTGCTTAG
1 TGGAATTGTGCTTAG
50612 TGGAATTGT
1 TGGAATTGT
50621 ATACTGGAAT
Statistics
Matches: 33, Mismatches: 5, Indels: 1
0.85 0.13 0.03
Matches are distributed among these distances:
14 11 0.33
15 22 0.67
ACGTcount: A:0.19, C:0.09, G:0.34, T:0.38
Consensus pattern (15 bp):
TGGAATTGTGCTTAG
Left flanking sequence: Indices 50068 -- 50567
GTGTACCATAGTGTGATGGTAGACTACCATTGTCTGATATTCAGTAGAATCTACCATAGTCTACC
ATAGTCTGATATTTAATAGAAACTACCATAGTCTACCAAGTCTGATAGTAGAATCTCCATAGTCT
ACCATAGTCTGATAGTAGAATCTCCATAGTCCACCATAGTCTGATATTTAATAGAATCTACCATA
GTCTTCCAGAGTCTGATTTTTCAGAGAATCTACCATAGTCTGAGATTTCGTAAAGTCTACCATAT
TCTGACATTTCGTAAAATCTACCATCGTCTGACATTTTGTAGAATCTGTGCATAGTCTGACTGTC
GGAAAACCGACACGACACGGCAACCGAACGAGGACACAGCCAACTTGGACGAGGCTGAAATCGTA
GAAGTGTGTCAGAAGTGTGACCGAAGTGTGACCAAGTGTGACCGCTAATAGAGCTGGAATTGTTG
GAATTGCTGGAATTGGCTGGATTTGGGCTTGCTGACTGTGCCTAC
Right flanking sequence: Indices 50621 -- 51120
ATACTGGAATTGTGTGCTTACATTGGGCCTACTGATTAAGTTTTGTGGAATAGTGCTTACGAATT
GTATACTGGAATTATTTACTAGAATTGTTACTGGAATTGTGACTGGAATTGTACTGGAATTTTGT
ACTATAATTGTTACTGCAATTGAGCGTACGATTGTGTGCTCTTGTGCTTCGGAAAAACATTGCAA
CCCAACGGTTTTGTGATTTGGTTTTGTGACTTGTTTTTGTGATTTTGCAGCCAAAACAAACAGTG
GCTTGTGTCATCTAACCATGTAACCCAGAGGCTTAACCCAGCTCATCGCCACGCCTTACTCGCAA
CCACCTTCCCGGGCGGACGCTGGCGAAGGGTGGCATTAGACCGTGCTGGGCACATGGACCCACTG
GTGCGCCTCCCAAGCCCCCCCAAGCCCCCCACGCGCGAGTTGGGCCATGGTTGCTGGGCCTGAGC
CCGGAGGTGGGGGTATTTTTAGCAGTCTGCATGGTGCTCGTACGA
Found at i:50722 original size:12 final size:12
Alignment explanation
Indices: 50681--50772 Score: 87
Period size: 12 Copynumber: 7.5 Consensus size: 12
50671 TAGTGCTTAC
50681 GAATTGTATACTG
1 GAATTGT-TACTG
* *
50694 GAATTATTTACTA
1 GAATT-GTTACTG
50707 GAATTGTTACTG
1 GAATTGTTACTG
*
50719 GAATTGTGACTG
1 GAATTGTTACTG
50731 GAATTG-TACTG
1 GAATTGTTACTG
* *
50742 GAATTTTGTACTA
1 GAATTGT-TACTG
*
50755 TAATTGTTACTG
1 GAATTGTTACTG
*
50767 CAATTG
1 GAATTG
50773 AGCGTACGAT
Statistics
Matches: 64, Mismatches: 12, Indels: 7
0.77 0.14 0.08
Matches are distributed among these distances:
11 9 0.14
12 31 0.48
13 23 0.36
14 1 0.02
ACGTcount: A:0.29, C:0.09, G:0.21, T:0.41
Consensus pattern (12 bp):
GAATTGTTACTG
Left flanking sequence: Indices 50181 -- 50680
TAGAATCTCCATAGTCTACCATAGTCTGATAGTAGAATCTCCATAGTCCACCATAGTCTGATATT
TAATAGAATCTACCATAGTCTTCCAGAGTCTGATTTTTCAGAGAATCTACCATAGTCTGAGATTT
CGTAAAGTCTACCATATTCTGACATTTCGTAAAATCTACCATCGTCTGACATTTTGTAGAATCTG
TGCATAGTCTGACTGTCGGAAAACCGACACGACACGGCAACCGAACGAGGACACAGCCAACTTGG
ACGAGGCTGAAATCGTAGAAGTGTGTCAGAAGTGTGACCGAAGTGTGACCAAGTGTGACCGCTAA
TAGAGCTGGAATTGTTGGAATTGCTGGAATTGGCTGGATTTGGGCTTGCTGACTGTGCCTACTGG
AATTGTGCTTCTGGAACGGTGCTTAGTGGAATTGTGCTTAGTGGAATTGTATACTGGAATTGTGT
GCTTACATTGGGCCTACTGATTAAGTTTTGTGGAATAGTGCTTAC
Right flanking sequence: Indices 50773 -- 51272
AGCGTACGATTGTGTGCTCTTGTGCTTCGGAAAAACATTGCAACCCAACGGTTTTGTGATTTGGT
TTTGTGACTTGTTTTTGTGATTTTGCAGCCAAAACAAACAGTGGCTTGTGTCATCTAACCATGTA
ACCCAGAGGCTTAACCCAGCTCATCGCCACGCCTTACTCGCAACCACCTTCCCGGGCGGACGCTG
GCGAAGGGTGGCATTAGACCGTGCTGGGCACATGGACCCACTGGTGCGCCTCCCAAGCCCCCCCA
AGCCCCCCACGCGCGAGTTGGGCCATGGTTGCTGGGCCTGAGCCCGGAGGTGGGGGTATTTTTAG
CAGTCTGCATGGTGCTCGTACGATATCCGGTGTTCGCTACCGGCGAATGCTGGGGAGCACCTTCG
ACGACATTAATACGCACGGAGTGGTGCCACCCGCCAAAACATCCGCGGGTGTCGGGCCATGATGG
CTGTAGCGATCGTAAATCGCATTGGTGGTGCAGATGTCATGTAGT
Found at i:50785 original size:48 final size:48
Alignment explanation
Indices: 50680--50774 Score: 120
Period size: 48 Copynumber: 1.9 Consensus size: 48
50670 ATAGTGCTTA
* *
50680 CGAATTGTATACTGGAATTATTTACTAGAATTGTTACTGGAATTGTGACT
1 CGAATTG--TACTGGAATTATTTACTAGAATTGTTACTGCAATTGAGACT
* *
50730 GGAATTGTACTGGAATT-TTGTACTATAATTGTTACTGCAATTGAG
1 CGAATTGTACTGGAATTATT-TACTAGAATTGTTACTGCAATTGAG
50775 CGTACGATTG
Statistics
Matches: 40, Mismatches: 4, Indels: 4
0.83 0.08 0.08
Matches are distributed among these distances:
47 2 0.05
48 32 0.80
50 6 0.15
ACGTcount: A:0.29, C:0.09, G:0.21, T:0.40
Consensus pattern (48 bp):
CGAATTGTACTGGAATTATTTACTAGAATTGTTACTGCAATTGAGACT
Left flanking sequence: Indices 50180 -- 50679
GTAGAATCTCCATAGTCTACCATAGTCTGATAGTAGAATCTCCATAGTCCACCATAGTCTGATAT
TTAATAGAATCTACCATAGTCTTCCAGAGTCTGATTTTTCAGAGAATCTACCATAGTCTGAGATT
TCGTAAAGTCTACCATATTCTGACATTTCGTAAAATCTACCATCGTCTGACATTTTGTAGAATCT
GTGCATAGTCTGACTGTCGGAAAACCGACACGACACGGCAACCGAACGAGGACACAGCCAACTTG
GACGAGGCTGAAATCGTAGAAGTGTGTCAGAAGTGTGACCGAAGTGTGACCAAGTGTGACCGCTA
ATAGAGCTGGAATTGTTGGAATTGCTGGAATTGGCTGGATTTGGGCTTGCTGACTGTGCCTACTG
GAATTGTGCTTCTGGAACGGTGCTTAGTGGAATTGTGCTTAGTGGAATTGTATACTGGAATTGTG
TGCTTACATTGGGCCTACTGATTAAGTTTTGTGGAATAGTGCTTA
Right flanking sequence: Indices 50775 -- 51274
CGTACGATTGTGTGCTCTTGTGCTTCGGAAAAACATTGCAACCCAACGGTTTTGTGATTTGGTTT
TGTGACTTGTTTTTGTGATTTTGCAGCCAAAACAAACAGTGGCTTGTGTCATCTAACCATGTAAC
CCAGAGGCTTAACCCAGCTCATCGCCACGCCTTACTCGCAACCACCTTCCCGGGCGGACGCTGGC
GAAGGGTGGCATTAGACCGTGCTGGGCACATGGACCCACTGGTGCGCCTCCCAAGCCCCCCCAAG
CCCCCCACGCGCGAGTTGGGCCATGGTTGCTGGGCCTGAGCCCGGAGGTGGGGGTATTTTTAGCA
GTCTGCATGGTGCTCGTACGATATCCGGTGTTCGCTACCGGCGAATGCTGGGGAGCACCTTCGAC
GACATTAATACGCACGGAGTGGTGCCACCCGCCAAAACATCCGCGGGTGTCGGGCCATGATGGCT
GTAGCGATCGTAAATCGCATTGGTGGTGCAGATGTCATGTAGTCT
Found at i:50840 original size:13 final size:13
Alignment explanation
Indices: 50822--50860 Score: 60
Period size: 13 Copynumber: 3.0 Consensus size: 13
50812 GCAACCCAAC
50822 GGTTTTGTGATTT
1 GGTTTTGTGATTT
*
50835 GGTTTTGTGACTT
1 GGTTTTGTGATTT
*
50848 GTTTTTGTGATTT
1 GGTTTTGTGATTT
50861 TGCAGCCAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.08, C:0.03, G:0.28, T:0.62
Consensus pattern (13 bp):
GGTTTTGTGATTT
Left flanking sequence: Indices 50322 -- 50821
CCATATTCTGACATTTCGTAAAATCTACCATCGTCTGACATTTTGTAGAATCTGTGCATAGTCTG
ACTGTCGGAAAACCGACACGACACGGCAACCGAACGAGGACACAGCCAACTTGGACGAGGCTGAA
ATCGTAGAAGTGTGTCAGAAGTGTGACCGAAGTGTGACCAAGTGTGACCGCTAATAGAGCTGGAA
TTGTTGGAATTGCTGGAATTGGCTGGATTTGGGCTTGCTGACTGTGCCTACTGGAATTGTGCTTC
TGGAACGGTGCTTAGTGGAATTGTGCTTAGTGGAATTGTATACTGGAATTGTGTGCTTACATTGG
GCCTACTGATTAAGTTTTGTGGAATAGTGCTTACGAATTGTATACTGGAATTATTTACTAGAATT
GTTACTGGAATTGTGACTGGAATTGTACTGGAATTTTGTACTATAATTGTTACTGCAATTGAGCG
TACGATTGTGTGCTCTTGTGCTTCGGAAAAACATTGCAACCCAAC
Right flanking sequence: Indices 50861 -- 51360
TGCAGCCAAAACAAACAGTGGCTTGTGTCATCTAACCATGTAACCCAGAGGCTTAACCCAGCTCA
TCGCCACGCCTTACTCGCAACCACCTTCCCGGGCGGACGCTGGCGAAGGGTGGCATTAGACCGTG
CTGGGCACATGGACCCACTGGTGCGCCTCCCAAGCCCCCCCAAGCCCCCCACGCGCGAGTTGGGC
CATGGTTGCTGGGCCTGAGCCCGGAGGTGGGGGTATTTTTAGCAGTCTGCATGGTGCTCGTACGA
TATCCGGTGTTCGCTACCGGCGAATGCTGGGGAGCACCTTCGACGACATTAATACGCACGGAGTG
GTGCCACCCGCCAAAACATCCGCGGGTGTCGGGCCATGATGGCTGTAGCGATCGTAAATCGCATT
GGTGGTGCAGATGTCATGTAGTCTTCGATACCGGTTGCCAAATCGGTCGGTTGCTATTTAATCAC
TCAGCCCGACTAGGCAGGAGTAGTGCGTAGAGCGATGGTAGCCTG
Found at i:51861 original size:20 final size:17
Alignment explanation
Indices: 51807--51844 Score: 67
Period size: 17 Copynumber: 2.2 Consensus size: 17
51797 ACCTAATAGC
51807 ACCATTACCACTCTACT
1 ACCATTACCACTCTACT
*
51824 ACCATTACTACTCTACT
1 ACCATTACCACTCTACT
51841 ACCA
1 ACCA
51845 CTATTACCAC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.32, C:0.39, G:0.00, T:0.29
Consensus pattern (17 bp):
ACCATTACCACTCTACT
Left flanking sequence: Indices 51307 -- 51806
TTTAATCACTCAGCCCGACTAGGCAGGAGTAGTGCGTAGAGCGATGGTAGCCTGGACAGCACCTG
GTGAGGCTCAAAGGGGACAGGGAGACGACGAATGCGGAGTGGGTGGGGGTAGTGGGGGTAGTGAG
AATTTTGGCGGTTGTGGTGGCTGTTGGTGTCTTACTTTGTGCTCACTGATCTGCTACAATGACAC
CAGACGTAAACACGCAAACATGCCAAGAGCAGGGTTTGCGCGTTTATTGGGTCTGGTGTGGATGG
TTTGATCGGCGAATGGTCTCGATCCGTCTCGAATCCGGTCTCGATTTGCGATGATCCATGGATCG
TTCCATTCTTGGTTGCGACGGGGGTGAAACGGTCACAAGACCAGGGGTGCCAGTGCCGTTGGCCA
TCATCGTGCATGAGCAAGGAAGGTATTTACGTAAACAGACCAAAGCAGATGGTTTACGGTACGGT
GTAAACATCCAAGAGAGGTAGCGCCAGAGAAACCAACCTAATAGC
Right flanking sequence: Indices 51845 -- 52344
CTATTACCACCCTACTAGTCTGATCTACTCTACTCTGATCCACTACTCTGATCTACTACTATGAG
CAATTACACCACTCTACTACCCTGATCTGCTACCTCTAGCTATTTCACCACTCTACTATTCCCAC
ACTATTACCACTCTATCTCCCACCCTATTACCACCCCACATTAACCACCCTTCCCGTAATTACCA
CCCATTCCACAACCACCACTCACTACCCACTCAACCACACCCACCGTTTCACCACTCCACACCAC
ATACCACTCTCACACTCATTTCACATCCCAGCCTACTACAATTCCACCTCCCAGCCACGTCCCAC
ACCGCTTTCCACACACCTGCGTCCCACATACCCACCTCCTACTTCCATGTCCCACTTCCCACATC
CCAGAAACGTCCCACACCCACCCATCTACACCCACCCATCCACACCCCACACCCTACAATCGTAT
AATTAGAGTCTGCCTCGGACCCCAATGGGGCCATCCCTCATAGCA
Found at i:51890 original size:13 final size:13
Alignment explanation
Indices: 51874--51904 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
51864 CTGATCTACT
51874 CTACTCTGATCCA
1 CTACTCTGATCCA
*
51887 CTACTCTGATCTA
1 CTACTCTGATCCA
51900 CTACT
1 CTACT
51905 ATGAGCAATT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.23, C:0.35, G:0.06, T:0.35
Consensus pattern (13 bp):
CTACTCTGATCCA
Left flanking sequence: Indices 51374 -- 51873
GAGGCTCAAAGGGGACAGGGAGACGACGAATGCGGAGTGGGTGGGGGTAGTGGGGGTAGTGAGAA
TTTTGGCGGTTGTGGTGGCTGTTGGTGTCTTACTTTGTGCTCACTGATCTGCTACAATGACACCA
GACGTAAACACGCAAACATGCCAAGAGCAGGGTTTGCGCGTTTATTGGGTCTGGTGTGGATGGTT
TGATCGGCGAATGGTCTCGATCCGTCTCGAATCCGGTCTCGATTTGCGATGATCCATGGATCGTT
CCATTCTTGGTTGCGACGGGGGTGAAACGGTCACAAGACCAGGGGTGCCAGTGCCGTTGGCCATC
ATCGTGCATGAGCAAGGAAGGTATTTACGTAAACAGACCAAAGCAGATGGTTTACGGTACGGTGT
AAACATCCAAGAGAGGTAGCGCCAGAGAAACCAACCTAATAGCACCATTACCACTCTACTACCAT
TACTACTCTACTACCACTATTACCACCCTACTAGTCTGATCTACT
Right flanking sequence: Indices 51905 -- 52404
ATGAGCAATTACACCACTCTACTACCCTGATCTGCTACCTCTAGCTATTTCACCACTCTACTATT
CCCACACTATTACCACTCTATCTCCCACCCTATTACCACCCCACATTAACCACCCTTCCCGTAAT
TACCACCCATTCCACAACCACCACTCACTACCCACTCAACCACACCCACCGTTTCACCACTCCAC
ACCACATACCACTCTCACACTCATTTCACATCCCAGCCTACTACAATTCCACCTCCCAGCCACGT
CCCACACCGCTTTCCACACACCTGCGTCCCACATACCCACCTCCTACTTCCATGTCCCACTTCCC
ACATCCCAGAAACGTCCCACACCCACCCATCTACACCCACCCATCCACACCCCACACCCTACAAT
CGTATAATTAGAGTCTGCCTCGGACCCCAATGGGGCCATCCCTCATAGCAACTCATCCCTTCCCC
CTCACCCATCGCTTCCACCACCCCTCACCCACCCCTTCTCCACCC
Found at i:51935 original size:39 final size:39
Alignment explanation
Indices: 51886--51967 Score: 103
Period size: 39 Copynumber: 2.1 Consensus size: 39
51876 ACTCTGATCC
*
51886 ACTACTCTGATCTACTA-CTATGAGCAATTACACCACTCT
1 ACTACCCTGATCTACTACCTAT-AGCAATTACACCACTCT
* * * *
51925 ACTACCCTGATCTGCTACCTCTAGCTATTTCACCACTCT
1 ACTACCCTGATCTACTACCTATAGCAATTACACCACTCT
51964 ACTA
1 ACTA
51968 TTCCCACACT
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
39 34 0.92
40 3 0.08
ACGTcount: A:0.27, C:0.34, G:0.07, T:0.32
Consensus pattern (39 bp):
ACTACCCTGATCTACTACCTATAGCAATTACACCACTCT
Left flanking sequence: Indices 51386 -- 51885
GGACAGGGAGACGACGAATGCGGAGTGGGTGGGGGTAGTGGGGGTAGTGAGAATTTTGGCGGTTG
TGGTGGCTGTTGGTGTCTTACTTTGTGCTCACTGATCTGCTACAATGACACCAGACGTAAACACG
CAAACATGCCAAGAGCAGGGTTTGCGCGTTTATTGGGTCTGGTGTGGATGGTTTGATCGGCGAAT
GGTCTCGATCCGTCTCGAATCCGGTCTCGATTTGCGATGATCCATGGATCGTTCCATTCTTGGTT
GCGACGGGGGTGAAACGGTCACAAGACCAGGGGTGCCAGTGCCGTTGGCCATCATCGTGCATGAG
CAAGGAAGGTATTTACGTAAACAGACCAAAGCAGATGGTTTACGGTACGGTGTAAACATCCAAGA
GAGGTAGCGCCAGAGAAACCAACCTAATAGCACCATTACCACTCTACTACCATTACTACTCTACT
ACCACTATTACCACCCTACTAGTCTGATCTACTCTACTCTGATCC
Right flanking sequence: Indices 51968 -- 52467
TTCCCACACTATTACCACTCTATCTCCCACCCTATTACCACCCCACATTAACCACCCTTCCCGTA
ATTACCACCCATTCCACAACCACCACTCACTACCCACTCAACCACACCCACCGTTTCACCACTCC
ACACCACATACCACTCTCACACTCATTTCACATCCCAGCCTACTACAATTCCACCTCCCAGCCAC
GTCCCACACCGCTTTCCACACACCTGCGTCCCACATACCCACCTCCTACTTCCATGTCCCACTTC
CCACATCCCAGAAACGTCCCACACCCACCCATCTACACCCACCCATCCACACCCCACACCCTACA
ATCGTATAATTAGAGTCTGCCTCGGACCCCAATGGGGCCATCCCTCATAGCAACTCATCCCTTCC
CCCTCACCCATCGCTTCCACCACCCCTCACCCACCCCTTCTCCACCCCTTCTCCACCCCCTACCT
CTTTCACCACCCAACCACCACAACCACCTCGCTTTCGTCCTCCCC
Found at i:51985 original size:25 final size:23
Alignment explanation
Indices: 51965--52008 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 23
51955 CACCACTCTA
51965 CTAT-TCCCACACTATTACCACT
1 CTATCTCCCACACTATTACCACT
*
51987 CTATCTCCCACCCTATTACCAC
1 CTATCTCCCACACTATTACCAC
52009 CCCACATTAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
22 4 0.20
23 16 0.80
ACGTcount: A:0.25, C:0.45, G:0.00, T:0.30
Consensus pattern (23 bp):
CTATCTCCCACACTATTACCACT
Left flanking sequence: Indices 51465 -- 51964
GTCTTACTTTGTGCTCACTGATCTGCTACAATGACACCAGACGTAAACACGCAAACATGCCAAGA
GCAGGGTTTGCGCGTTTATTGGGTCTGGTGTGGATGGTTTGATCGGCGAATGGTCTCGATCCGTC
TCGAATCCGGTCTCGATTTGCGATGATCCATGGATCGTTCCATTCTTGGTTGCGACGGGGGTGAA
ACGGTCACAAGACCAGGGGTGCCAGTGCCGTTGGCCATCATCGTGCATGAGCAAGGAAGGTATTT
ACGTAAACAGACCAAAGCAGATGGTTTACGGTACGGTGTAAACATCCAAGAGAGGTAGCGCCAGA
GAAACCAACCTAATAGCACCATTACCACTCTACTACCATTACTACTCTACTACCACTATTACCAC
CCTACTAGTCTGATCTACTCTACTCTGATCCACTACTCTGATCTACTACTATGAGCAATTACACC
ACTCTACTACCCTGATCTGCTACCTCTAGCTATTTCACCACTCTA
Right flanking sequence: Indices 52009 -- 52508
CCCACATTAACCACCCTTCCCGTAATTACCACCCATTCCACAACCACCACTCACTACCCACTCAA
CCACACCCACCGTTTCACCACTCCACACCACATACCACTCTCACACTCATTTCACATCCCAGCCT
ACTACAATTCCACCTCCCAGCCACGTCCCACACCGCTTTCCACACACCTGCGTCCCACATACCCA
CCTCCTACTTCCATGTCCCACTTCCCACATCCCAGAAACGTCCCACACCCACCCATCTACACCCA
CCCATCCACACCCCACACCCTACAATCGTATAATTAGAGTCTGCCTCGGACCCCAATGGGGCCAT
CCCTCATAGCAACTCATCCCTTCCCCCTCACCCATCGCTTCCACCACCCCTCACCCACCCCTTCT
CCACCCCTTCTCCACCCCCTACCTCTTTCACCACCCAACCACCACAACCACCTCGCTTTCGTCCT
CCCCACCCACGTCTCCACTCCCCTCCCTGAAACACACACAACACC
Found at i:52267 original size:14 final size:14
Alignment explanation
Indices: 52246--52281 Score: 63
Period size: 14 Copynumber: 2.6 Consensus size: 14
52236 CAGAAACGTC
52246 CCACACCCACCCAT
1 CCACACCCACCCAT
*
52260 CTACACCCACCCAT
1 CCACACCCACCCAT
52274 CCACACCC
1 CCACACCC
52282 CACACCCTAC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.28, C:0.64, G:0.00, T:0.08
Consensus pattern (14 bp):
CCACACCCACCCAT
Left flanking sequence: Indices 51746 -- 52245
TGGTTTACGGTACGGTGTAAACATCCAAGAGAGGTAGCGCCAGAGAAACCAACCTAATAGCACCA
TTACCACTCTACTACCATTACTACTCTACTACCACTATTACCACCCTACTAGTCTGATCTACTCT
ACTCTGATCCACTACTCTGATCTACTACTATGAGCAATTACACCACTCTACTACCCTGATCTGCT
ACCTCTAGCTATTTCACCACTCTACTATTCCCACACTATTACCACTCTATCTCCCACCCTATTAC
CACCCCACATTAACCACCCTTCCCGTAATTACCACCCATTCCACAACCACCACTCACTACCCACT
CAACCACACCCACCGTTTCACCACTCCACACCACATACCACTCTCACACTCATTTCACATCCCAG
CCTACTACAATTCCACCTCCCAGCCACGTCCCACACCGCTTTCCACACACCTGCGTCCCACATAC
CCACCTCCTACTTCCATGTCCCACTTCCCACATCCCAGAAACGTC
Right flanking sequence: Indices 52282 -- 52781
CACACCCTACAATCGTATAATTAGAGTCTGCCTCGGACCCCAATGGGGCCATCCCTCATAGCAAC
TCATCCCTTCCCCCTCACCCATCGCTTCCACCACCCCTCACCCACCCCTTCTCCACCCCTTCTCC
ACCCCCTACCTCTTTCACCACCCAACCACCACAACCACCTCGCTTTCGTCCTCCCCACCCACGTC
TCCACTCCCCTCCCTGAAACACACACAACACCCCAGCATTGTCCGTATGCATTCATGGAATGTGG
CTGCAAGCAACTGGGCCCTGACTACAAATATTTTTATTTTTCGTGGTGTCAACGTTCGTTTCTCG
GGTTGCGTTAGGGCTGACATGCGCTGCCATTGTTTACATGAGCGGGCCCGCGGGCTCTGGCGGCC
TCCCACGCGCCCAGCGCCCTCGAAACCACACCGACCGCGTCCCCCGCCCTCGCTCTACACCCCCC
CACCGCTCTCGAGCTCCCCCCTCGCCTTCTCCTACCGCCAGCCCG
Found at i:52402 original size:11 final size:11
Alignment explanation
Indices: 52388--52416 Score: 58
Period size: 11 Copynumber: 2.6 Consensus size: 11
52378 CACCCCTCAC
52388 CCACCCCTTCT
1 CCACCCCTTCT
52399 CCACCCCTTCT
1 CCACCCCTTCT
52410 CCACCCC
1 CCACCCC
52417 CTACCTCTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.10, C:0.69, G:0.00, T:0.21
Consensus pattern (11 bp):
CCACCCCTTCT
Left flanking sequence: Indices 51888 -- 52387
TACTCTGATCTACTACTATGAGCAATTACACCACTCTACTACCCTGATCTGCTACCTCTAGCTAT
TTCACCACTCTACTATTCCCACACTATTACCACTCTATCTCCCACCCTATTACCACCCCACATTA
ACCACCCTTCCCGTAATTACCACCCATTCCACAACCACCACTCACTACCCACTCAACCACACCCA
CCGTTTCACCACTCCACACCACATACCACTCTCACACTCATTTCACATCCCAGCCTACTACAATT
CCACCTCCCAGCCACGTCCCACACCGCTTTCCACACACCTGCGTCCCACATACCCACCTCCTACT
TCCATGTCCCACTTCCCACATCCCAGAAACGTCCCACACCCACCCATCTACACCCACCCATCCAC
ACCCCACACCCTACAATCGTATAATTAGAGTCTGCCTCGGACCCCAATGGGGCCATCCCTCATAG
CAACTCATCCCTTCCCCCTCACCCATCGCTTCCACCACCCCTCAC
Right flanking sequence: Indices 52417 -- 52916
CTACCTCTTTCACCACCCAACCACCACAACCACCTCGCTTTCGTCCTCCCCACCCACGTCTCCAC
TCCCCTCCCTGAAACACACACAACACCCCAGCATTGTCCGTATGCATTCATGGAATGTGGCTGCA
AGCAACTGGGCCCTGACTACAAATATTTTTATTTTTCGTGGTGTCAACGTTCGTTTCTCGGGTTG
CGTTAGGGCTGACATGCGCTGCCATTGTTTACATGAGCGGGCCCGCGGGCTCTGGCGGCCTCCCA
CGCGCCCAGCGCCCTCGAAACCACACCGACCGCGTCCCCCGCCCTCGCTCTACACCCCCCCACCG
CTCTCGAGCTCCCCCCTCGCCTTCTCCTACCGCCAGCCCGCTGCCGATCGCTATTTAGCTATTAC
CTAATCGAGTCGCGACATTACCACAGAAATTTTGGTGCACTTTGCTGCCATAAAACATTAAATCG
TCCTCGATACAGGGCCAGCGAGCGTGTGTGCAATCCGGTTTATAA
Found at i:52405 original size:22 final size:23
Alignment explanation
Indices: 52357--52406 Score: 66
Period size: 23 Copynumber: 2.2 Consensus size: 23
52347 TCATCCCTTC
* *
52357 CCCCTCACCCATCGCTTCCACCA
1 CCCCTCACCCACCCCTTCCACCA
*
52380 CCCCTCACCCACCCCTT-CTCCA
1 CCCCTCACCCACCCCTTCCACCA
52402 CCCCT
1 CCCCT
52407 TCTCCACCCC
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
22 9 0.38
23 15 0.62
ACGTcount: A:0.14, C:0.66, G:0.02, T:0.18
Consensus pattern (23 bp):
CCCCTCACCCACCCCTTCCACCA
Left flanking sequence: Indices 51857 -- 52356
TACTAGTCTGATCTACTCTACTCTGATCCACTACTCTGATCTACTACTATGAGCAATTACACCAC
TCTACTACCCTGATCTGCTACCTCTAGCTATTTCACCACTCTACTATTCCCACACTATTACCACT
CTATCTCCCACCCTATTACCACCCCACATTAACCACCCTTCCCGTAATTACCACCCATTCCACAA
CCACCACTCACTACCCACTCAACCACACCCACCGTTTCACCACTCCACACCACATACCACTCTCA
CACTCATTTCACATCCCAGCCTACTACAATTCCACCTCCCAGCCACGTCCCACACCGCTTTCCAC
ACACCTGCGTCCCACATACCCACCTCCTACTTCCATGTCCCACTTCCCACATCCCAGAAACGTCC
CACACCCACCCATCTACACCCACCCATCCACACCCCACACCCTACAATCGTATAATTAGAGTCTG
CCTCGGACCCCAATGGGGCCATCCCTCATAGCAACTCATCCCTTC
Right flanking sequence: Indices 52407 -- 52906
TCTCCACCCCCTACCTCTTTCACCACCCAACCACCACAACCACCTCGCTTTCGTCCTCCCCACCC
ACGTCTCCACTCCCCTCCCTGAAACACACACAACACCCCAGCATTGTCCGTATGCATTCATGGAA
TGTGGCTGCAAGCAACTGGGCCCTGACTACAAATATTTTTATTTTTCGTGGTGTCAACGTTCGTT
TCTCGGGTTGCGTTAGGGCTGACATGCGCTGCCATTGTTTACATGAGCGGGCCCGCGGGCTCTGG
CGGCCTCCCACGCGCCCAGCGCCCTCGAAACCACACCGACCGCGTCCCCCGCCCTCGCTCTACAC
CCCCCCACCGCTCTCGAGCTCCCCCCTCGCCTTCTCCTACCGCCAGCCCGCTGCCGATCGCTATT
TAGCTATTACCTAATCGAGTCGCGACATTACCACAGAAATTTTGGTGCACTTTGCTGCCATAAAA
CATTAAATCGTCCTCGATACAGGGCCAGCGAGCGTGTGTGCAATC
Found at i:53182 original size:9 final size:9
Alignment explanation
Indices: 53168--53192 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
53158 CCCACGCCCG
53168 CGCTCCCCA
1 CGCTCCCCA
53177 CGCTCCCCA
1 CGCTCCCCA
53186 CGCTCCC
1 CGCTCCC
53193 TCCGGCGCGC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.08, C:0.68, G:0.12, T:0.12
Consensus pattern (9 bp):
CGCTCCCCA
Left flanking sequence: Indices 52668 -- 53167
GGCCTCCCACGCGCCCAGCGCCCTCGAAACCACACCGACCGCGTCCCCCGCCCTCGCTCTACACC
CCCCCACCGCTCTCGAGCTCCCCCCTCGCCTTCTCCTACCGCCAGCCCGCTGCCGATCGCTATTT
AGCTATTACCTAATCGAGTCGCGACATTACCACAGAAATTTTGGTGCACTTTGCTGCCATAAAAC
ATTAAATCGTCCTCGATACAGGGCCAGCGAGCGTGTGTGCAATCCGGTTTATAAGCACGGAAAAA
ATCCCACCACAGACAAAGTTGGCTCCGGGTCCATGCAAGTAACCTCGCCGTTGGACTCGCCTGTG
CGCTCGCCCGCGGACGCCAAGGGGTTTGCGTTGGCGCCCAAGCCGTGGGACGACGTCGATGAGGT
GCTGGAGGACTTGTTTGACGACACCGAGATCGACTTTGACCTCGAGGAGGAGCTGGAGGACCTCA
CCGACATGAGTCTCCACCCGAAGTTGGCCCGTGCGCCCACGCCCG
Right flanking sequence: Indices 53193 -- 53692
TCCGGCGCGCGCGCTGTTGTTGGCCACCACGGGCCTCGACACCTTTGAGGTGGACTGCGACCTGC
TTCCCCGGATCGCCCCGAGCACGCTCGAGGGGCTCCTAGCGGACGAGTCGCCCGACTGGGACCAC
GTGGTGGTGGTGGACTGCCGGTTTGGCTACGAGTTTGACGGCGGCCACGTTGATGCTGCCGTCAA
CTTGCTGACTCAGCTGGTGCTCGAGGACTACTTTTTTGGGCCTCTGGCCCACGCCCGCCAGGTGC
ACGCGCCGCTCGCCCGCACGCTCTACGTGTTCCACTGCGAGTTCCTGGTGTTCCGGGGGCCGCTG
ATGGCCACGCACTTGCGCGCGCTCGACCGCCGCCACAACACCGACCACTACCCCTTTTTGAGCTA
CCCCGACGTCGTGGTGTTGGACGGGGGCTACAAACGCTTCCGCGAGCGCGCGCCGCACCGCTGCG
GCGGGTACGTGCTGATGAACGACGTGCAGTACGAGCACCACTGTG
Found at i:54391 original size:12 final size:12
Alignment explanation
Indices: 54376--54405 Score: 60
Period size: 12 Copynumber: 2.5 Consensus size: 12
54366 GGCTCGGGAA
54376 TAATCTCGAGAG
1 TAATCTCGAGAG
54388 TAATCTCGAGAG
1 TAATCTCGAGAG
54400 TAATCT
1 TAATCT
54406 TTTCTCGAGG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.33, C:0.17, G:0.20, T:0.30
Consensus pattern (12 bp):
TAATCTCGAGAG
Left flanking sequence: Indices 53876 -- 54375
TGTTGGCGCAGCTGCTGCAGCTGCTGTTGACGGCGCCCTTGCGACGGCCGCCTCCGACCCCGTTT
TTTGGTGACGTCACCCTGCCCACACGTGACCGCCGCCGGTCACAAGCCCTGGTGCTGCTGATGGA
CGAGTTGGAGTACGAGCAGCCGTGCCGGTTGAAGCTGGCGCGGCTGGTGGGGTGCTTCACCCAGC
AGTTCACCTTCCCGCGGCAGCCCGCGTCCGGCACCCCGTCGCTCTCCGCCAAGCTGAGCCGCACC
CGGCTCGTGCTGCTGCTGACGCCGTTTATGCAGGGGCTGCTGCCGATGCTGCTGCCGTTTTTGCT
GGCGGTGGACCCGCTCGAGCTGGGCAAGTGCCCGCTGCTGTTCATCGACCCCATCAACGACACCC
CCGTCGACTTTTCCGTGCCAGTTTCCCACAAGCGCACCAGCTCGGCGTTGACGTCGATGCTCTAC
TCGTTTGTGGAGGAATGAGGCTCGGGAATGATCGAGGCTCGGGAA
Right flanking sequence: Indices 54406 -- 54905
TTTCTCGAGGAATAATCTTCTCAGGGATTAATCTTCTCGAGGAATAATTTTCTCGAGGAATAATC
TCGAATAATCTTCTCGAGAGTAATCTCTTCTTATTCTCTTCTCGAGAATAATCTCTTCTCGATAA
TCTCTTCTCTTGCGCTAGCCTGCCCGGTGCCAGTCACCGAAGCATGATAACTAGCCGCGCCCGGT
GCCAGTCACCGGGGATGCATAATAACTAATATATTCGATGGTGGTAGCAGTACCCTAATGCATGA
TAATAATAAGAAAGTAGGGTGGTGGAAGAGTGGAAGGAGTGGAAGGAGTGGAAGGAGTGGAATAG
GAGTGGTGACAATCAGGAATTGGTGAGTAGGGTGGGTTCCAAGCTGGGTTTTTGGTACAACGTAG
TGAAAGTAAGCTTTGTTAAGGTGACGTAATGAACAGTATGCTTTGTTAAGTGATGAGCAGTAAAG
TAGGTGAGGGTTTCAATTATGGCTAATTGTGACGGAAGGTGTGTT
Found at i:54413 original size:17 final size:18
Alignment explanation
Indices: 54391--54471 Score: 79
Period size: 16 Copynumber: 4.9 Consensus size: 18
54381 TCGAGAGTAA
*
54391 TCTCGA-GAGTAATCTTT
1 TCTCGAGGAATAATCTTT
54408 TCTCGAGGAATAATC--T
1 TCTCGAGGAATAATCTTT
*
54424 TCTC-AGGGATTAATC--T
1 TCTCGA-GGAATAATCTTT
54440 TCTCGAGGAATAA--TTT
1 TCTCGAGGAATAATCTTT
54456 TCTCGAGGAATAATCT
1 TCTCGAGGAATAATCT
54472 CGAATAATCT
Statistics
Matches: 54, Mismatches: 3, Indels: 13
0.77 0.04 0.19
Matches are distributed among these distances:
15 1 0.02
16 38 0.70
17 7 0.13
18 8 0.15
ACGTcount: A:0.28, C:0.17, G:0.19, T:0.36
Consensus pattern (18 bp):
TCTCGAGGAATAATCTTT
Left flanking sequence: Indices 53891 -- 54390
TGCAGCTGCTGTTGACGGCGCCCTTGCGACGGCCGCCTCCGACCCCGTTTTTTGGTGACGTCACC
CTGCCCACACGTGACCGCCGCCGGTCACAAGCCCTGGTGCTGCTGATGGACGAGTTGGAGTACGA
GCAGCCGTGCCGGTTGAAGCTGGCGCGGCTGGTGGGGTGCTTCACCCAGCAGTTCACCTTCCCGC
GGCAGCCCGCGTCCGGCACCCCGTCGCTCTCCGCCAAGCTGAGCCGCACCCGGCTCGTGCTGCTG
CTGACGCCGTTTATGCAGGGGCTGCTGCCGATGCTGCTGCCGTTTTTGCTGGCGGTGGACCCGCT
CGAGCTGGGCAAGTGCCCGCTGCTGTTCATCGACCCCATCAACGACACCCCCGTCGACTTTTCCG
TGCCAGTTTCCCACAAGCGCACCAGCTCGGCGTTGACGTCGATGCTCTACTCGTTTGTGGAGGAA
TGAGGCTCGGGAATGATCGAGGCTCGGGAATAATCTCGAGAGTAA
Right flanking sequence: Indices 54472 -- 54971
CGAATAATCTTCTCGAGAGTAATCTCTTCTTATTCTCTTCTCGAGAATAATCTCTTCTCGATAAT
CTCTTCTCTTGCGCTAGCCTGCCCGGTGCCAGTCACCGAAGCATGATAACTAGCCGCGCCCGGTG
CCAGTCACCGGGGATGCATAATAACTAATATATTCGATGGTGGTAGCAGTACCCTAATGCATGAT
AATAATAAGAAAGTAGGGTGGTGGAAGAGTGGAAGGAGTGGAAGGAGTGGAAGGAGTGGAATAGG
AGTGGTGACAATCAGGAATTGGTGAGTAGGGTGGGTTCCAAGCTGGGTTTTTGGTACAACGTAGT
GAAAGTAAGCTTTGTTAAGGTGACGTAATGAACAGTATGCTTTGTTAAGTGATGAGCAGTAAAGT
AGGTGAGGGTTTCAATTATGGCTAATTGTGACGGAAGGTGTGTTGGTGGGTGTGTTGGTGGGTGT
GTTGGTGGGCTAATGAAGTGTCGGGTTGTGTATTGTAAAGTAGCA
Found at i:54453 original size:16 final size:16
Alignment explanation
Indices: 54407--54471 Score: 96
Period size: 16 Copynumber: 4.1 Consensus size: 16
54397 GAGTAATCTT
54407 TTCTCGAGGAATAATC
1 TTCTCGAGGAATAATC
*
54423 TTCTC-AGGGATTAATC
1 TTCTCGA-GGAATAATC
*
54439 TTCTCGAGGAATAATT
1 TTCTCGAGGAATAATC
54455 TTCTCGAGGAATAATC
1 TTCTCGAGGAATAATC
54471 T
1 T
54472 CGAATAATCT
Statistics
Matches: 43, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
15 1 0.02
16 41 0.95
17 1 0.02
ACGTcount: A:0.29, C:0.17, G:0.18, T:0.35
Consensus pattern (16 bp):
TTCTCGAGGAATAATC
Left flanking sequence: Indices 53907 -- 54406
GGCGCCCTTGCGACGGCCGCCTCCGACCCCGTTTTTTGGTGACGTCACCCTGCCCACACGTGACC
GCCGCCGGTCACAAGCCCTGGTGCTGCTGATGGACGAGTTGGAGTACGAGCAGCCGTGCCGGTTG
AAGCTGGCGCGGCTGGTGGGGTGCTTCACCCAGCAGTTCACCTTCCCGCGGCAGCCCGCGTCCGG
CACCCCGTCGCTCTCCGCCAAGCTGAGCCGCACCCGGCTCGTGCTGCTGCTGACGCCGTTTATGC
AGGGGCTGCTGCCGATGCTGCTGCCGTTTTTGCTGGCGGTGGACCCGCTCGAGCTGGGCAAGTGC
CCGCTGCTGTTCATCGACCCCATCAACGACACCCCCGTCGACTTTTCCGTGCCAGTTTCCCACAA
GCGCACCAGCTCGGCGTTGACGTCGATGCTCTACTCGTTTGTGGAGGAATGAGGCTCGGGAATGA
TCGAGGCTCGGGAATAATCTCGAGAGTAATCTCGAGAGTAATCTT
Right flanking sequence: Indices 54472 -- 54971
CGAATAATCTTCTCGAGAGTAATCTCTTCTTATTCTCTTCTCGAGAATAATCTCTTCTCGATAAT
CTCTTCTCTTGCGCTAGCCTGCCCGGTGCCAGTCACCGAAGCATGATAACTAGCCGCGCCCGGTG
CCAGTCACCGGGGATGCATAATAACTAATATATTCGATGGTGGTAGCAGTACCCTAATGCATGAT
AATAATAAGAAAGTAGGGTGGTGGAAGAGTGGAAGGAGTGGAAGGAGTGGAAGGAGTGGAATAGG
AGTGGTGACAATCAGGAATTGGTGAGTAGGGTGGGTTCCAAGCTGGGTTTTTGGTACAACGTAGT
GAAAGTAAGCTTTGTTAAGGTGACGTAATGAACAGTATGCTTTGTTAAGTGATGAGCAGTAAAGT
AGGTGAGGGTTTCAATTATGGCTAATTGTGACGGAAGGTGTGTTGGTGGGTGTGTTGGTGGGTGT
GTTGGTGGGCTAATGAAGTGTCGGGTTGTGTATTGTAAAGTAGCA
Found at i:54479 original size:26 final size:25
Alignment explanation
Indices: 54447--54497 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 25
54437 TCTTCTCGAG
*
54447 GAATAATTTTCTCGAGGAATAATCTC
1 GAATAATCTTCTCGA-GAATAATCTC
*
54473 GAATAATCTTCTCGAGAGTAATCTC
1 GAATAATCTTCTCGAGAATAATCTC
54498 TTCTTATTCT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 9 0.39
26 14 0.61
ACGTcount: A:0.33, C:0.18, G:0.16, T:0.33
Consensus pattern (25 bp):
GAATAATCTTCTCGAGAATAATCTC
Left flanking sequence: Indices 53947 -- 54446
GACGTCACCCTGCCCACACGTGACCGCCGCCGGTCACAAGCCCTGGTGCTGCTGATGGACGAGTT
GGAGTACGAGCAGCCGTGCCGGTTGAAGCTGGCGCGGCTGGTGGGGTGCTTCACCCAGCAGTTCA
CCTTCCCGCGGCAGCCCGCGTCCGGCACCCCGTCGCTCTCCGCCAAGCTGAGCCGCACCCGGCTC
GTGCTGCTGCTGACGCCGTTTATGCAGGGGCTGCTGCCGATGCTGCTGCCGTTTTTGCTGGCGGT
GGACCCGCTCGAGCTGGGCAAGTGCCCGCTGCTGTTCATCGACCCCATCAACGACACCCCCGTCG
ACTTTTCCGTGCCAGTTTCCCACAAGCGCACCAGCTCGGCGTTGACGTCGATGCTCTACTCGTTT
GTGGAGGAATGAGGCTCGGGAATGATCGAGGCTCGGGAATAATCTCGAGAGTAATCTCGAGAGTA
ATCTTTTCTCGAGGAATAATCTTCTCAGGGATTAATCTTCTCGAG
Right flanking sequence: Indices 54498 -- 54997
TTCTTATTCTCTTCTCGAGAATAATCTCTTCTCGATAATCTCTTCTCTTGCGCTAGCCTGCCCGG
TGCCAGTCACCGAAGCATGATAACTAGCCGCGCCCGGTGCCAGTCACCGGGGATGCATAATAACT
AATATATTCGATGGTGGTAGCAGTACCCTAATGCATGATAATAATAAGAAAGTAGGGTGGTGGAA
GAGTGGAAGGAGTGGAAGGAGTGGAAGGAGTGGAATAGGAGTGGTGACAATCAGGAATTGGTGAG
TAGGGTGGGTTCCAAGCTGGGTTTTTGGTACAACGTAGTGAAAGTAAGCTTTGTTAAGGTGACGT
AATGAACAGTATGCTTTGTTAAGTGATGAGCAGTAAAGTAGGTGAGGGTTTCAATTATGGCTAAT
TGTGACGGAAGGTGTGTTGGTGGGTGTGTTGGTGGGTGTGTTGGTGGGCTAATGAAGTGTCGGGT
TGTGTATTGTAAAGTAGCATTGGAGACGATAACCTTATAACCGCA
Found at i:54537 original size:14 final size:14
Alignment explanation
Indices: 54518--54544 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
54508 CTTCTCGAGA
54518 ATAATCTCTTCTCG
1 ATAATCTCTTCTCG
54532 ATAATCTCTTCTC
1 ATAATCTCTTCTC
54545 TTGCGCTAGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.22, C:0.30, G:0.04, T:0.44
Consensus pattern (14 bp):
ATAATCTCTTCTCG
Left flanking sequence: Indices 54018 -- 54517
CGAGCAGCCGTGCCGGTTGAAGCTGGCGCGGCTGGTGGGGTGCTTCACCCAGCAGTTCACCTTCC
CGCGGCAGCCCGCGTCCGGCACCCCGTCGCTCTCCGCCAAGCTGAGCCGCACCCGGCTCGTGCTG
CTGCTGACGCCGTTTATGCAGGGGCTGCTGCCGATGCTGCTGCCGTTTTTGCTGGCGGTGGACCC
GCTCGAGCTGGGCAAGTGCCCGCTGCTGTTCATCGACCCCATCAACGACACCCCCGTCGACTTTT
CCGTGCCAGTTTCCCACAAGCGCACCAGCTCGGCGTTGACGTCGATGCTCTACTCGTTTGTGGAG
GAATGAGGCTCGGGAATGATCGAGGCTCGGGAATAATCTCGAGAGTAATCTCGAGAGTAATCTTT
TCTCGAGGAATAATCTTCTCAGGGATTAATCTTCTCGAGGAATAATTTTCTCGAGGAATAATCTC
GAATAATCTTCTCGAGAGTAATCTCTTCTTATTCTCTTCTCGAGA
Right flanking sequence: Indices 54545 -- 55044
TTGCGCTAGCCTGCCCGGTGCCAGTCACCGAAGCATGATAACTAGCCGCGCCCGGTGCCAGTCAC
CGGGGATGCATAATAACTAATATATTCGATGGTGGTAGCAGTACCCTAATGCATGATAATAATAA
GAAAGTAGGGTGGTGGAAGAGTGGAAGGAGTGGAAGGAGTGGAAGGAGTGGAATAGGAGTGGTGA
CAATCAGGAATTGGTGAGTAGGGTGGGTTCCAAGCTGGGTTTTTGGTACAACGTAGTGAAAGTAA
GCTTTGTTAAGGTGACGTAATGAACAGTATGCTTTGTTAAGTGATGAGCAGTAAAGTAGGTGAGG
GTTTCAATTATGGCTAATTGTGACGGAAGGTGTGTTGGTGGGTGTGTTGGTGGGTGTGTTGGTGG
GCTAATGAAGTGTCGGGTTGTGTATTGTAAAGTAGCATTGGAGACGATAACCTTATAACCGCAAA
GTGTTAGTATAAGCTTTACGATGAGCTCGGTGGTGGCATTAATGT
Found at i:54707 original size:9 final size:9
Alignment explanation
Indices: 54687--54727 Score: 75
Period size: 9 Copynumber: 4.7 Consensus size: 9
54677 AAGTAGGGTG
54687 GTGGAA-GA
1 GTGGAAGGA
54695 GTGGAAGGA
1 GTGGAAGGA
54704 GTGGAAGGA
1 GTGGAAGGA
54713 GTGGAAGGA
1 GTGGAAGGA
54722 GTGGAA
1 GTGGAA
54728 TAGGAGTGGT
Statistics
Matches: 32, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
8 6 0.19
9 26 0.81
ACGTcount: A:0.34, C:0.00, G:0.54, T:0.12
Consensus pattern (9 bp):
GTGGAAGGA
Left flanking sequence: Indices 54187 -- 54686
CTGCCGTTTTTGCTGGCGGTGGACCCGCTCGAGCTGGGCAAGTGCCCGCTGCTGTTCATCGACCC
CATCAACGACACCCCCGTCGACTTTTCCGTGCCAGTTTCCCACAAGCGCACCAGCTCGGCGTTGA
CGTCGATGCTCTACTCGTTTGTGGAGGAATGAGGCTCGGGAATGATCGAGGCTCGGGAATAATCT
CGAGAGTAATCTCGAGAGTAATCTTTTCTCGAGGAATAATCTTCTCAGGGATTAATCTTCTCGAG
GAATAATTTTCTCGAGGAATAATCTCGAATAATCTTCTCGAGAGTAATCTCTTCTTATTCTCTTC
TCGAGAATAATCTCTTCTCGATAATCTCTTCTCTTGCGCTAGCCTGCCCGGTGCCAGTCACCGAA
GCATGATAACTAGCCGCGCCCGGTGCCAGTCACCGGGGATGCATAATAACTAATATATTCGATGG
TGGTAGCAGTACCCTAATGCATGATAATAATAAGAAAGTAGGGTG
Right flanking sequence: Indices 54728 -- 55227
TAGGAGTGGTGACAATCAGGAATTGGTGAGTAGGGTGGGTTCCAAGCTGGGTTTTTGGTACAACG
TAGTGAAAGTAAGCTTTGTTAAGGTGACGTAATGAACAGTATGCTTTGTTAAGTGATGAGCAGTA
AAGTAGGTGAGGGTTTCAATTATGGCTAATTGTGACGGAAGGTGTGTTGGTGGGTGTGTTGGTGG
GTGTGTTGGTGGGCTAATGAAGTGTCGGGTTGTGTATTGTAAAGTAGCATTGGAGACGATAACCT
TATAACCGCAAAGTGTTAGTATAAGCTTTACGATGAGCTCGGTGGTGGCATTAATGTTAAACTCT
TTGCATCCTTTTGGCACTGAGCTATAGAAAAGTCGGGCCATGGCAAACCGAGCTATAGAACGATA
TGAGCCATTGTAATATTATGCTCTAACCCTATGTTTGGCACATGCAGCTTTTCAGATCAATTGAG
TTTAAGGTTCGTCTCCCAGTCTCTCTAGACACTCTACGCATGGGC
Found at i:54913 original size:12 final size:12
Alignment explanation
Indices: 54898--54935 Score: 76
Period size: 12 Copynumber: 3.2 Consensus size: 12
54888 TGTGACGGAA
54898 GGTGTGTTGGTG
1 GGTGTGTTGGTG
54910 GGTGTGTTGGTG
1 GGTGTGTTGGTG
54922 GGTGTGTTGGTG
1 GGTGTGTTGGTG
54934 GG
1 GG
54936 CTAATGAAGT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 26 1.00
ACGTcount: A:0.00, C:0.00, G:0.61, T:0.39
Consensus pattern (12 bp):
GGTGTGTTGGTG
Left flanking sequence: Indices 54398 -- 54897
AGTAATCTTTTCTCGAGGAATAATCTTCTCAGGGATTAATCTTCTCGAGGAATAATTTTCTCGAG
GAATAATCTCGAATAATCTTCTCGAGAGTAATCTCTTCTTATTCTCTTCTCGAGAATAATCTCTT
CTCGATAATCTCTTCTCTTGCGCTAGCCTGCCCGGTGCCAGTCACCGAAGCATGATAACTAGCCG
CGCCCGGTGCCAGTCACCGGGGATGCATAATAACTAATATATTCGATGGTGGTAGCAGTACCCTA
ATGCATGATAATAATAAGAAAGTAGGGTGGTGGAAGAGTGGAAGGAGTGGAAGGAGTGGAAGGAG
TGGAATAGGAGTGGTGACAATCAGGAATTGGTGAGTAGGGTGGGTTCCAAGCTGGGTTTTTGGTA
CAACGTAGTGAAAGTAAGCTTTGTTAAGGTGACGTAATGAACAGTATGCTTTGTTAAGTGATGAG
CAGTAAAGTAGGTGAGGGTTTCAATTATGGCTAATTGTGACGGAA
Right flanking sequence: Indices 54936 -- 55435
CTAATGAAGTGTCGGGTTGTGTATTGTAAAGTAGCATTGGAGACGATAACCTTATAACCGCAAAG
TGTTAGTATAAGCTTTACGATGAGCTCGGTGGTGGCATTAATGTTAAACTCTTTGCATCCTTTTG
GCACTGAGCTATAGAAAAGTCGGGCCATGGCAAACCGAGCTATAGAACGATATGAGCCATTGTAA
TATTATGCTCTAACCCTATGTTTGGCACATGCAGCTTTTCAGATCAATTGAGTTTAAGGTTCGTC
TCCCAGTCTCTCTAGACACTCTACGCATGGGCTAAGCTTTTTTAGACAATTGTCGTCTACGGGCC
AAGTAGGCAATTGTGTGACGAGAGTAGGTGGAGTCGCAAGCGGGTAAACTGCATGAGCTCTCCTC
GTAGCACTGTGAGCTTTGGTAATCTGATCAAGTTTTGTGATAAGTTAAAGCGATGGCTACTGAAC
TAGACACCCATGAGTGCTCAATATTCAACACTAACATCAACACTA
Found at i:54915 original size:24 final size:24
Alignment explanation
Indices: 54888--54935 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
54878 TATGGCTAAT
54888 TGTGACGGAAGGTGTGTTGGTGGG
1 TGTGACGGAAGGTGTGTTGGTGGG
** **
54912 TGTGTTGGTGGGTGTGTTGGTGGG
1 TGTGACGGAAGGTGTGTTGGTGGG
54936 CTAATGAAGT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.06, C:0.02, G:0.56, T:0.35
Consensus pattern (24 bp):
TGTGACGGAAGGTGTGTTGGTGGG
Left flanking sequence: Indices 54388 -- 54887
TAATCTCGAGAGTAATCTTTTCTCGAGGAATAATCTTCTCAGGGATTAATCTTCTCGAGGAATAA
TTTTCTCGAGGAATAATCTCGAATAATCTTCTCGAGAGTAATCTCTTCTTATTCTCTTCTCGAGA
ATAATCTCTTCTCGATAATCTCTTCTCTTGCGCTAGCCTGCCCGGTGCCAGTCACCGAAGCATGA
TAACTAGCCGCGCCCGGTGCCAGTCACCGGGGATGCATAATAACTAATATATTCGATGGTGGTAG
CAGTACCCTAATGCATGATAATAATAAGAAAGTAGGGTGGTGGAAGAGTGGAAGGAGTGGAAGGA
GTGGAAGGAGTGGAATAGGAGTGGTGACAATCAGGAATTGGTGAGTAGGGTGGGTTCCAAGCTGG
GTTTTTGGTACAACGTAGTGAAAGTAAGCTTTGTTAAGGTGACGTAATGAACAGTATGCTTTGTT
AAGTGATGAGCAGTAAAGTAGGTGAGGGTTTCAATTATGGCTAAT
Right flanking sequence: Indices 54936 -- 55435
CTAATGAAGTGTCGGGTTGTGTATTGTAAAGTAGCATTGGAGACGATAACCTTATAACCGCAAAG
TGTTAGTATAAGCTTTACGATGAGCTCGGTGGTGGCATTAATGTTAAACTCTTTGCATCCTTTTG
GCACTGAGCTATAGAAAAGTCGGGCCATGGCAAACCGAGCTATAGAACGATATGAGCCATTGTAA
TATTATGCTCTAACCCTATGTTTGGCACATGCAGCTTTTCAGATCAATTGAGTTTAAGGTTCGTC
TCCCAGTCTCTCTAGACACTCTACGCATGGGCTAAGCTTTTTTAGACAATTGTCGTCTACGGGCC
AAGTAGGCAATTGTGTGACGAGAGTAGGTGGAGTCGCAAGCGGGTAAACTGCATGAGCTCTCCTC
GTAGCACTGTGAGCTTTGGTAATCTGATCAAGTTTTGTGATAAGTTAAAGCGATGGCTACTGAAC
TAGACACCCATGAGTGCTCAATATTCAACACTAACATCAACACTA
Found at i:55442 original size:10 final size:10
Alignment explanation
Indices: 55415--55464 Score: 61
Period size: 10 Copynumber: 5.1 Consensus size: 10
55405 TGCTCAATAT
55415 TCAACACTAAC
1 TCAACACT-AC
55426 ATCAACACTAC
1 -TCAACACTAC
55437 TCAACACTAC
1 TCAACACTAC
55447 T---CACTAC
1 TCAACACTAC
55454 TCAACACTAC
1 TCAACACTAC
55464 T
1 T
55465 TTTCATCACT
Statistics
Matches: 35, Mismatches: 0, Indels: 8
0.81 0.00 0.19
Matches are distributed among these distances:
7 7 0.20
10 18 0.51
11 2 0.06
12 8 0.23
ACGTcount: A:0.40, C:0.38, G:0.00, T:0.22
Consensus pattern (10 bp):
TCAACACTAC
Left flanking sequence: Indices 54915 -- 55414
GTTGGTGGGTGTGTTGGTGGGCTAATGAAGTGTCGGGTTGTGTATTGTAAAGTAGCATTGGAGAC
GATAACCTTATAACCGCAAAGTGTTAGTATAAGCTTTACGATGAGCTCGGTGGTGGCATTAATGT
TAAACTCTTTGCATCCTTTTGGCACTGAGCTATAGAAAAGTCGGGCCATGGCAAACCGAGCTATA
GAACGATATGAGCCATTGTAATATTATGCTCTAACCCTATGTTTGGCACATGCAGCTTTTCAGAT
CAATTGAGTTTAAGGTTCGTCTCCCAGTCTCTCTAGACACTCTACGCATGGGCTAAGCTTTTTTA
GACAATTGTCGTCTACGGGCCAAGTAGGCAATTGTGTGACGAGAGTAGGTGGAGTCGCAAGCGGG
TAAACTGCATGAGCTCTCCTCGTAGCACTGTGAGCTTTGGTAATCTGATCAAGTTTTGTGATAAG
TTAAAGCGATGGCTACTGAACTAGACACCCATGAGTGCTCAATAT
Right flanking sequence: Indices 55465 -- 55964
TTTCATCACTACCCATACTCTACCTCAAAACCACTCGTCAACTCTATTCGTCAATTCACATCACC
TCTTCTCCTACCCCCTTCTGTGTAACCTTCCATGACACCATTAAGCTTTAACGTCGCCGATAAAG
CTACTTTCGACCACAAAACCGCGGTCGTCTGCCCGGGTTTATCGCATTAGGTTCGATCACGCGGG
GGGAAACGAGTGACCTTCCGCCACCCGCCTGCGTGACGGCCTAAGCCCATGTTGATGTATGTGGA
TGTCCCCTTTGGGACGCTCGGCTGAAGTCTATTTATAGCCGGGAAGTGATCGCGTGTGGCTACCG
CCAATCCAGGGCTAGCCAGGGGGATACGTTTGTGTCATCTCCGGGGAATGTGAGCCTATATGTGC
TTTGTGACCTGGCACAGCCGTTTTGTAGCTGATAATACCCGTCGTACCGTCGTCTGTCGTCTGTT
CTCTGCTTGTTTACAGTCACGGTCGCGTTGCTGTTTGCTGTTTAC
Found at i:55453 original size:17 final size:17
Alignment explanation
Indices: 55431--55464 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
55421 CTAACATCAA
55431 CACTACTCAACACTACT
1 CACTACTCAACACTACT
55448 CACTACTCAACACTACT
1 CACTACTCAACACTACT
55465 TTTCATCACT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.35, C:0.41, G:0.00, T:0.24
Consensus pattern (17 bp):
CACTACTCAACACTACT
Left flanking sequence: Indices 54931 -- 55430
GTGGGCTAATGAAGTGTCGGGTTGTGTATTGTAAAGTAGCATTGGAGACGATAACCTTATAACCG
CAAAGTGTTAGTATAAGCTTTACGATGAGCTCGGTGGTGGCATTAATGTTAAACTCTTTGCATCC
TTTTGGCACTGAGCTATAGAAAAGTCGGGCCATGGCAAACCGAGCTATAGAACGATATGAGCCAT
TGTAATATTATGCTCTAACCCTATGTTTGGCACATGCAGCTTTTCAGATCAATTGAGTTTAAGGT
TCGTCTCCCAGTCTCTCTAGACACTCTACGCATGGGCTAAGCTTTTTTAGACAATTGTCGTCTAC
GGGCCAAGTAGGCAATTGTGTGACGAGAGTAGGTGGAGTCGCAAGCGGGTAAACTGCATGAGCTC
TCCTCGTAGCACTGTGAGCTTTGGTAATCTGATCAAGTTTTGTGATAAGTTAAAGCGATGGCTAC
TGAACTAGACACCCATGAGTGCTCAATATTCAACACTAACATCAA
Right flanking sequence: Indices 55465 -- 55964
TTTCATCACTACCCATACTCTACCTCAAAACCACTCGTCAACTCTATTCGTCAATTCACATCACC
TCTTCTCCTACCCCCTTCTGTGTAACCTTCCATGACACCATTAAGCTTTAACGTCGCCGATAAAG
CTACTTTCGACCACAAAACCGCGGTCGTCTGCCCGGGTTTATCGCATTAGGTTCGATCACGCGGG
GGGAAACGAGTGACCTTCCGCCACCCGCCTGCGTGACGGCCTAAGCCCATGTTGATGTATGTGGA
TGTCCCCTTTGGGACGCTCGGCTGAAGTCTATTTATAGCCGGGAAGTGATCGCGTGTGGCTACCG
CCAATCCAGGGCTAGCCAGGGGGATACGTTTGTGTCATCTCCGGGGAATGTGAGCCTATATGTGC
TTTGTGACCTGGCACAGCCGTTTTGTAGCTGATAATACCCGTCGTACCGTCGTCTGTCGTCTGTT
CTCTGCTTGTTTACAGTCACGGTCGCGTTGCTGTTTGCTGTTTAC
Found at i:56136 original size:15 final size:15
Alignment explanation
Indices: 56065--56134 Score: 88
Period size: 15 Copynumber: 4.6 Consensus size: 15
56055 ATCTAACAGA
*
56065 GACGTGGTTTACGGT
1 GACGTGGTTTACCGT
*
56080 GACGTGGTTTAGCGT
1 GACGTGGTTTACCGT
*
56095 GAC-TTGTTTAACCGT
1 GACGTGGTTT-ACCGT
56110 GACGTGGTTTACCGT
1 GACGTGGTTTACCGT
56125 GACCGTGGTT
1 GA-CGTGGTT
56135 ACAGCGACCG
Statistics
Matches: 47, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
14 5 0.11
15 30 0.64
16 12 0.26
ACGTcount: A:0.14, C:0.17, G:0.34, T:0.34
Consensus pattern (15 bp):
GACGTGGTTTACCGT
Left flanking sequence: Indices 55565 -- 56064
CACCATTAAGCTTTAACGTCGCCGATAAAGCTACTTTCGACCACAAAACCGCGGTCGTCTGCCCG
GGTTTATCGCATTAGGTTCGATCACGCGGGGGGAAACGAGTGACCTTCCGCCACCCGCCTGCGTG
ACGGCCTAAGCCCATGTTGATGTATGTGGATGTCCCCTTTGGGACGCTCGGCTGAAGTCTATTTA
TAGCCGGGAAGTGATCGCGTGTGGCTACCGCCAATCCAGGGCTAGCCAGGGGGATACGTTTGTGT
CATCTCCGGGGAATGTGAGCCTATATGTGCTTTGTGACCTGGCACAGCCGTTTTGTAGCTGATAA
TACCCGTCGTACCGTCGTCTGTCGTCTGTTCTCTGCTTGTTTACAGTCACGGTCGCGTTGCTGTT
TGCTGTTTACCTTCCGGGCCGTGTTCATAATCACATGGCCATTACGAGCCAAAACACGGTGGATC
TGGTGGAAAAAATAATGGATTGGCCAATGATGGCGATCTAACAGA
Right flanking sequence: Indices 56135 -- 56634
ACAGCGACCGTAGTTTCCTATTCTGGCGTTTCCCAACAGTGACCGTGGTTACAGTGACCCTAGTT
ACAGGAACTGTGGTTACAGAGACCCTGGTTTACAGCGACCGTAATTTCCTATTCCGACGTGGTTT
ACAGCACCGTGGTTATAGCGACCTTAGTTTACAGCTACCGTAGTTACACCACCTTAGTTTCACCA
CCGAGTACACCGACCGTAATACACCGACCGTAGTTTCCTATTCCGGACGGTTGTCAGGTGGGCCA
TTAGCCCAGCTAATGCCACCATGGGGCAAGATTGCACTGGGCGAGTTGCCACTGAGTCCTATAGG
CTCGTTCATTAGTCATTACACACACACTTCCCTTAGTTACACCATCGTAGTACACCTACCGTAGT
TTCCTATTTTGGACGGTTGCTAGGTGGGCCATTAGCCCAGCTAATGCCACCATGGGGCGAGATTG
CCAGGCCGAGTTGCCACAAGCTACCACTGAGTCCTATAGGCCGTT
Found at i:56190 original size:15 final size:15
Alignment explanation
Indices: 56170--56241 Score: 65
Period size: 15 Copynumber: 4.7 Consensus size: 15
56160 GCGTTTCCCA
56170 ACAGTGACCGTGGTT
1 ACAGTGACCGTGGTT
* *
56185 ACAGTGACCCTAGTT
1 ACAGTGACCGTGGTT
*
56200 ACAG-GAACTGTGGTT
1 ACAGTG-ACCGTGGTT
* *
56215 ACAGAGACCCTGGTTT
1 ACAGTGACCGTGG-TT
*
56231 ACAGCGACCGT
1 ACAGTGACCGT
56242 AATTTCCTAT
Statistics
Matches: 45, Mismatches: 9, Indels: 5
0.76 0.15 0.08
Matches are distributed among these distances:
14 1 0.02
15 32 0.71
16 12 0.27
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.24
Consensus pattern (15 bp):
ACAGTGACCGTGGTT
Left flanking sequence: Indices 55670 -- 56169
TGACCTTCCGCCACCCGCCTGCGTGACGGCCTAAGCCCATGTTGATGTATGTGGATGTCCCCTTT
GGGACGCTCGGCTGAAGTCTATTTATAGCCGGGAAGTGATCGCGTGTGGCTACCGCCAATCCAGG
GCTAGCCAGGGGGATACGTTTGTGTCATCTCCGGGGAATGTGAGCCTATATGTGCTTTGTGACCT
GGCACAGCCGTTTTGTAGCTGATAATACCCGTCGTACCGTCGTCTGTCGTCTGTTCTCTGCTTGT
TTACAGTCACGGTCGCGTTGCTGTTTGCTGTTTACCTTCCGGGCCGTGTTCATAATCACATGGCC
ATTACGAGCCAAAACACGGTGGATCTGGTGGAAAAAATAATGGATTGGCCAATGATGGCGATCTA
ACAGAGACGTGGTTTACGGTGACGTGGTTTAGCGTGACTTGTTTAACCGTGACGTGGTTTACCGT
GACCGTGGTTACAGCGACCGTAGTTTCCTATTCTGGCGTTTCCCA
Right flanking sequence: Indices 56242 -- 56741
AATTTCCTATTCCGACGTGGTTTACAGCACCGTGGTTATAGCGACCTTAGTTTACAGCTACCGTA
GTTACACCACCTTAGTTTCACCACCGAGTACACCGACCGTAATACACCGACCGTAGTTTCCTATT
CCGGACGGTTGTCAGGTGGGCCATTAGCCCAGCTAATGCCACCATGGGGCAAGATTGCACTGGGC
GAGTTGCCACTGAGTCCTATAGGCTCGTTCATTAGTCATTACACACACACTTCCCTTAGTTACAC
CATCGTAGTACACCTACCGTAGTTTCCTATTTTGGACGGTTGCTAGGTGGGCCATTAGCCCAGCT
AATGCCACCATGGGGCGAGATTGCCAGGCCGAGTTGCCACAAGCTACCACTGAGTCCTATAGGCC
GTTCATTAGTCATTACACATACACTTCGCCCACCCGGGCGTCGTCCTTTGTTAGCAGTTTCTCCC
TCTCCTCCTCTTCGTTGAGCTCCTTGAGGGCCTGTTCCTCGTCCT
Found at i:56295 original size:30 final size:29
Alignment explanation
Indices: 56261--56340 Score: 85
Period size: 30 Copynumber: 2.8 Consensus size: 29
56251 TTCCGACGTG
* * *
56261 GTTTACAGCACCGTGGTTATAGCGACCTTA
1 GTTTACAGCACCGTAGTTACA-CCACCTTA
56291 GTTTACAGCTACCGTAGTTACACCACCTTA
1 GTTTACAGC-ACCGTAGTTACACCACCTTA
*
56321 GTTT-CACCACCG-AG-TACACC
1 GTTTACAGCACCGTAGTTACACC
56341 GACCGTAATA
Statistics
Matches: 45, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
26 6 0.13
27 2 0.04
28 4 0.09
29 3 0.07
30 20 0.44
31 10 0.22
ACGTcount: A:0.25, C:0.30, G:0.17, T:0.28
Consensus pattern (29 bp):
GTTTACAGCACCGTAGTTACACCACCTTA
Left flanking sequence: Indices 55761 -- 56260
AGCCGGGAAGTGATCGCGTGTGGCTACCGCCAATCCAGGGCTAGCCAGGGGGATACGTTTGTGTC
ATCTCCGGGGAATGTGAGCCTATATGTGCTTTGTGACCTGGCACAGCCGTTTTGTAGCTGATAAT
ACCCGTCGTACCGTCGTCTGTCGTCTGTTCTCTGCTTGTTTACAGTCACGGTCGCGTTGCTGTTT
GCTGTTTACCTTCCGGGCCGTGTTCATAATCACATGGCCATTACGAGCCAAAACACGGTGGATCT
GGTGGAAAAAATAATGGATTGGCCAATGATGGCGATCTAACAGAGACGTGGTTTACGGTGACGTG
GTTTAGCGTGACTTGTTTAACCGTGACGTGGTTTACCGTGACCGTGGTTACAGCGACCGTAGTTT
CCTATTCTGGCGTTTCCCAACAGTGACCGTGGTTACAGTGACCCTAGTTACAGGAACTGTGGTTA
CAGAGACCCTGGTTTACAGCGACCGTAATTTCCTATTCCGACGTG
Right flanking sequence: Indices 56341 -- 56840
GACCGTAATACACCGACCGTAGTTTCCTATTCCGGACGGTTGTCAGGTGGGCCATTAGCCCAGCT
AATGCCACCATGGGGCAAGATTGCACTGGGCGAGTTGCCACTGAGTCCTATAGGCTCGTTCATTA
GTCATTACACACACACTTCCCTTAGTTACACCATCGTAGTACACCTACCGTAGTTTCCTATTTTG
GACGGTTGCTAGGTGGGCCATTAGCCCAGCTAATGCCACCATGGGGCGAGATTGCCAGGCCGAGT
TGCCACAAGCTACCACTGAGTCCTATAGGCCGTTCATTAGTCATTACACATACACTTCGCCCACC
CGGGCGTCGTCCTTTGTTAGCAGTTTCTCCCTCTCCTCCTCTTCGTTGAGCTCCTTGAGGGCCTG
TTCCTCGTCCTCGGTAAGCCCCAGCAAGTCCGGCGGGATCTGCTGCATCTGCACCAGCGGCGCGT
GGCCCAAGTCGCGGAGCTGCTCGAGGATCGTCGTTTTGACCGCCT
Found at i:56354 original size:14 final size:14
Alignment explanation
Indices: 56335--56361 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
56325 CACCACCGAG
56335 TACACCGACCGTAA
1 TACACCGACCGTAA
56349 TACACCGACCGTA
1 TACACCGACCGTA
56362 GTTTCCTATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.33, C:0.37, G:0.15, T:0.15
Consensus pattern (14 bp):
TACACCGACCGTAA
Left flanking sequence: Indices 55835 -- 56334
GAATGTGAGCCTATATGTGCTTTGTGACCTGGCACAGCCGTTTTGTAGCTGATAATACCCGTCGT
ACCGTCGTCTGTCGTCTGTTCTCTGCTTGTTTACAGTCACGGTCGCGTTGCTGTTTGCTGTTTAC
CTTCCGGGCCGTGTTCATAATCACATGGCCATTACGAGCCAAAACACGGTGGATCTGGTGGAAAA
AATAATGGATTGGCCAATGATGGCGATCTAACAGAGACGTGGTTTACGGTGACGTGGTTTAGCGT
GACTTGTTTAACCGTGACGTGGTTTACCGTGACCGTGGTTACAGCGACCGTAGTTTCCTATTCTG
GCGTTTCCCAACAGTGACCGTGGTTACAGTGACCCTAGTTACAGGAACTGTGGTTACAGAGACCC
TGGTTTACAGCGACCGTAATTTCCTATTCCGACGTGGTTTACAGCACCGTGGTTATAGCGACCTT
AGTTTACAGCTACCGTAGTTACACCACCTTAGTTTCACCACCGAG
Right flanking sequence: Indices 56362 -- 56861
GTTTCCTATTCCGGACGGTTGTCAGGTGGGCCATTAGCCCAGCTAATGCCACCATGGGGCAAGAT
TGCACTGGGCGAGTTGCCACTGAGTCCTATAGGCTCGTTCATTAGTCATTACACACACACTTCCC
TTAGTTACACCATCGTAGTACACCTACCGTAGTTTCCTATTTTGGACGGTTGCTAGGTGGGCCAT
TAGCCCAGCTAATGCCACCATGGGGCGAGATTGCCAGGCCGAGTTGCCACAAGCTACCACTGAGT
CCTATAGGCCGTTCATTAGTCATTACACATACACTTCGCCCACCCGGGCGTCGTCCTTTGTTAGC
AGTTTCTCCCTCTCCTCCTCTTCGTTGAGCTCCTTGAGGGCCTGTTCCTCGTCCTCGGTAAGCCC
CAGCAAGTCCGGCGGGATCTGCTGCATCTGCACCAGCGGCGCGTGGCCCAAGTCGCGGAGCTGCT
CGAGGATCGTCGTTTTGACCGCCTCGAGGTACTTTTTCAGGTTCT
Found at i:58048 original size:22 final size:22
Alignment explanation
Indices: 58018--58101 Score: 114
Period size: 22 Copynumber: 3.8 Consensus size: 22
58008 TCGGTATACA
*
58018 GAATCCGGGCGCGTAACCGACG
1 GAATCCGGGCGCGTAACCGAAG
* * *
58040 GGATCCGGGCGCGTAACGGAAA
1 GAATCCGGGCGCGTAACCGAAG
*
58062 GAATCCGGGCGCGTAACGGAAG
1 GAATCCGGGCGCGTAACCGAAG
*
58084 TAATCCGGGCGCGTAACC
1 GAATCCGGGCGCGTAACC
58102 TTTTGACTGG
Statistics
Matches: 54, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 54 1.00
ACGTcount: A:0.25, C:0.27, G:0.37, T:0.11
Consensus pattern (22 bp):
GAATCCGGGCGCGTAACCGAAG
Left flanking sequence: Indices 57518 -- 58017
CCCAGCCAGTTGATGGCGATGTCGCTCATCCCCAGCGTCAACTTGCGGGTGGCGTCCAACAGGGC
GCCTGCATACATCGCCAGGTATGCTCCCATGCCGGCAAACACGGGGCAGTCGTCGCCGATGTTGA
ACTGGCACATGGTGGCGTCGTCGAGCTTGGTGTCGGGCACCACCAGGGCCAAGAAGTCGATGTAG
TCGCCCAGGTGGAACTCGGTCATCTCGTCGCGGGTGGCCGCGCGCGGCTCGTACACGTCCATGAG
CTCGTAGAGCCGGTACAGCGTCACCAAGTGGTCGGTCAACATGAGGCGGAACGGCTTCATCGGGT
GGAGGGCTCCGTAGTGGTAGTGGGACACGTCGGGGTTGAAGTGGTAGCTGACGTTTTTGTGGGTC
TTGCTGCCCTCCGCGTGGTAGAGCGGGGCGTGCCTCGCGGTGGCAGCGTCACTGCTGAGGGTGTC
GCTCATTCACGGGTGGTGGCTCTGTGGTGTGTTTTTCGGTATACA
Right flanking sequence: Indices 58102 -- 58601
TTTTGACTGGGTCTACTGGGCAAGAGCTATATGGAGGACGAACAATGGGTGGGGCAGCGTGACGG
TCGAGAGTAAATAATTGGGGCTCGGGGGCTGAGGCATGTGACGGGGGGCGTGCCGGCGGGGTGGC
GGTTGGCGCGGGCGTGGTGCGTGGTTGTTGAGCTGGCGTGGTTGGCAGAAAGGCAGGACGGTGGT
GGTGGTCGTGGTGGTGGGTGACGGTTCTTATGCCAATCATCTCTGGATCGCTGTTTCAATGATAG
TGGAGGCCTATTGTTCGAATCGGACAAAGTGAGGCAAGATGGGAAAATATGCGGACGGATGACGG
CTCGGATCTGGGAGACGGGCCCGATCGTAAATTACTATATATGGATGGAGAGTATGGGCGGAGCG
AGGGTGCGAGCTAAGGTGGTGCGAGCTAAGGTGGTGAGAGCTAAGGGTGCAGGTGTTGTGTTATT
GTGGTGTATGGCCGTGTTGTGGCCGTGTTAGTGTGACCGTGTTAT
Found at i:58090 original size:44 final size:44
Alignment explanation
Indices: 58017--58100 Score: 132
Period size: 44 Copynumber: 1.9 Consensus size: 44
58007 TTCGGTATAC
* *
58017 AGAATCCGGGCGCGTAACCGACGGGATCCGGGCGCGTAACGGAA
1 AGAATCCGGGCGCGTAACCGAAGGAATCCGGGCGCGTAACGGAA
* *
58061 AGAATCCGGGCGCGTAACGGAAGTAATCCGGGCGCGTAAC
1 AGAATCCGGGCGCGTAACCGAAGGAATCCGGGCGCGTAAC
58101 CTTTTGACTG
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
44 36 1.00
ACGTcount: A:0.26, C:0.26, G:0.37, T:0.11
Consensus pattern (44 bp):
AGAATCCGGGCGCGTAACCGAAGGAATCCGGGCGCGTAACGGAA
Left flanking sequence: Indices 57517 -- 58016
CCCCAGCCAGTTGATGGCGATGTCGCTCATCCCCAGCGTCAACTTGCGGGTGGCGTCCAACAGGG
CGCCTGCATACATCGCCAGGTATGCTCCCATGCCGGCAAACACGGGGCAGTCGTCGCCGATGTTG
AACTGGCACATGGTGGCGTCGTCGAGCTTGGTGTCGGGCACCACCAGGGCCAAGAAGTCGATGTA
GTCGCCCAGGTGGAACTCGGTCATCTCGTCGCGGGTGGCCGCGCGCGGCTCGTACACGTCCATGA
GCTCGTAGAGCCGGTACAGCGTCACCAAGTGGTCGGTCAACATGAGGCGGAACGGCTTCATCGGG
TGGAGGGCTCCGTAGTGGTAGTGGGACACGTCGGGGTTGAAGTGGTAGCTGACGTTTTTGTGGGT
CTTGCTGCCCTCCGCGTGGTAGAGCGGGGCGTGCCTCGCGGTGGCAGCGTCACTGCTGAGGGTGT
CGCTCATTCACGGGTGGTGGCTCTGTGGTGTGTTTTTCGGTATAC
Right flanking sequence: Indices 58101 -- 58600
CTTTTGACTGGGTCTACTGGGCAAGAGCTATATGGAGGACGAACAATGGGTGGGGCAGCGTGACG
GTCGAGAGTAAATAATTGGGGCTCGGGGGCTGAGGCATGTGACGGGGGGCGTGCCGGCGGGGTGG
CGGTTGGCGCGGGCGTGGTGCGTGGTTGTTGAGCTGGCGTGGTTGGCAGAAAGGCAGGACGGTGG
TGGTGGTCGTGGTGGTGGGTGACGGTTCTTATGCCAATCATCTCTGGATCGCTGTTTCAATGATA
GTGGAGGCCTATTGTTCGAATCGGACAAAGTGAGGCAAGATGGGAAAATATGCGGACGGATGACG
GCTCGGATCTGGGAGACGGGCCCGATCGTAAATTACTATATATGGATGGAGAGTATGGGCGGAGC
GAGGGTGCGAGCTAAGGTGGTGCGAGCTAAGGTGGTGAGAGCTAAGGGTGCAGGTGTTGTGTTAT
TGTGGTGTATGGCCGTGTTGTGGCCGTGTTAGTGTGACCGTGTTA
Found at i:58509 original size:12 final size:13
Alignment explanation
Indices: 58492--58541 Score: 55
Period size: 15 Copynumber: 3.5 Consensus size: 13
58482 GGGCGGAGCG
58492 AGGGTGCGAGCTA
1 AGGGTGCGAGCTA
58505 AGGTGGTGCGAGCTA
1 A-G-GGTGCGAGCTA
*
58520 AGGTGGTGAGAGCTA
1 A-G-GGTGCGAGCTA
58535 AGGGTGC
1 AGGGTGC
58542 AGGTGTTGTG
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
13 5 0.15
14 2 0.06
15 26 0.79
ACGTcount: A:0.22, C:0.12, G:0.48, T:0.18
Consensus pattern (13 bp):
AGGGTGCGAGCTA
Left flanking sequence: Indices 57992 -- 58491
CTCTGTGGTGTGTTTTTCGGTATACAGAATCCGGGCGCGTAACCGACGGGATCCGGGCGCGTAAC
GGAAAGAATCCGGGCGCGTAACGGAAGTAATCCGGGCGCGTAACCTTTTGACTGGGTCTACTGGG
CAAGAGCTATATGGAGGACGAACAATGGGTGGGGCAGCGTGACGGTCGAGAGTAAATAATTGGGG
CTCGGGGGCTGAGGCATGTGACGGGGGGCGTGCCGGCGGGGTGGCGGTTGGCGCGGGCGTGGTGC
GTGGTTGTTGAGCTGGCGTGGTTGGCAGAAAGGCAGGACGGTGGTGGTGGTCGTGGTGGTGGGTG
ACGGTTCTTATGCCAATCATCTCTGGATCGCTGTTTCAATGATAGTGGAGGCCTATTGTTCGAAT
CGGACAAAGTGAGGCAAGATGGGAAAATATGCGGACGGATGACGGCTCGGATCTGGGAGACGGGC
CCGATCGTAAATTACTATATATGGATGGAGAGTATGGGCGGAGCG
Right flanking sequence: Indices 58542 -- 59041
AGGTGTTGTGTTATTGTGGTGTATGGCCGTGTTGTGGCCGTGTTAGTGTGACCGTGTTATAGTCT
GCAAAGCAGTCCCAGCCTGCTCCACAATCGAGATAATAGCAATCTGTGCGTTCCAGATGACCAGG
TCAGATAATACCACCGTACTGGGTGCCAATAATCAATTGTACGCTGTGCAACCGGTACCCTGTTC
AACCTGTACCAATAATACCCTGTAGCAACTCTAGCATGGTTCTTTCTGTTCCAGATGTATAATAC
CTGTACCACCCGGACCTATAATACCGTCCCACCCGATAATACCTCTGTAATAATACCAATGTACC
TATCATTACCAACACCTGTACCATCACCAGCAATAATACCACTGTACTGCCCCGATAATACCAAT
GTACCTTTACCACCAACTGTACCACCATAATACCAATGTACCTGTACCACCTGTACCACCATAAT
ACTAATGTACCTGTACAACCACCTGTACAACCACCACCTGTACCA
Found at i:58514 original size:15 final size:15
Alignment explanation
Indices: 58494--58537 Score: 79
Period size: 15 Copynumber: 2.9 Consensus size: 15
58484 GCGGAGCGAG
58494 GGTGCGAGCTAAGGT
1 GGTGCGAGCTAAGGT
58509 GGTGCGAGCTAAGGT
1 GGTGCGAGCTAAGGT
*
58524 GGTGAGAGCTAAGG
1 GGTGCGAGCTAAGG
58538 GTGCAGGTGT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
15 28 1.00
ACGTcount: A:0.23, C:0.11, G:0.48, T:0.18
Consensus pattern (15 bp):
GGTGCGAGCTAAGGT
Left flanking sequence: Indices 57994 -- 58493
CTGTGGTGTGTTTTTCGGTATACAGAATCCGGGCGCGTAACCGACGGGATCCGGGCGCGTAACGG
AAAGAATCCGGGCGCGTAACGGAAGTAATCCGGGCGCGTAACCTTTTGACTGGGTCTACTGGGCA
AGAGCTATATGGAGGACGAACAATGGGTGGGGCAGCGTGACGGTCGAGAGTAAATAATTGGGGCT
CGGGGGCTGAGGCATGTGACGGGGGGCGTGCCGGCGGGGTGGCGGTTGGCGCGGGCGTGGTGCGT
GGTTGTTGAGCTGGCGTGGTTGGCAGAAAGGCAGGACGGTGGTGGTGGTCGTGGTGGTGGGTGAC
GGTTCTTATGCCAATCATCTCTGGATCGCTGTTTCAATGATAGTGGAGGCCTATTGTTCGAATCG
GACAAAGTGAGGCAAGATGGGAAAATATGCGGACGGATGACGGCTCGGATCTGGGAGACGGGCCC
GATCGTAAATTACTATATATGGATGGAGAGTATGGGCGGAGCGAG
Right flanking sequence: Indices 58538 -- 59037
GTGCAGGTGTTGTGTTATTGTGGTGTATGGCCGTGTTGTGGCCGTGTTAGTGTGACCGTGTTATA
GTCTGCAAAGCAGTCCCAGCCTGCTCCACAATCGAGATAATAGCAATCTGTGCGTTCCAGATGAC
CAGGTCAGATAATACCACCGTACTGGGTGCCAATAATCAATTGTACGCTGTGCAACCGGTACCCT
GTTCAACCTGTACCAATAATACCCTGTAGCAACTCTAGCATGGTTCTTTCTGTTCCAGATGTATA
ATACCTGTACCACCCGGACCTATAATACCGTCCCACCCGATAATACCTCTGTAATAATACCAATG
TACCTATCATTACCAACACCTGTACCATCACCAGCAATAATACCACTGTACTGCCCCGATAATAC
CAATGTACCTTTACCACCAACTGTACCACCATAATACCAATGTACCTGTACCACCTGTACCACCA
TAATACTAATGTACCTGTACAACCACCTGTACAACCACCACCTGT
Found at i:58951 original size:40 final size:37
Alignment explanation
Indices: 58921--59029 Score: 152
Period size: 37 Copynumber: 3.0 Consensus size: 37
58911 TACTGCCCCG
*
58921 ATAATACCAATGTACCTTTACCACCAACTGTACCACC
1 ATAATACCAATGTACCTGTACCACCAACTGTACCACC
58958 ATAATACCAATGTACCTGTACCA-C--CTGTACCACC
1 ATAATACCAATGTACCTGTACCACCAACTGTACCACC
* * * *
58992 ATAATACTAATGTACCTGTACAACCACCTGTACAACC
1 ATAATACCAATGTACCTGTACCACCAACTGTACCACC
59029 A
1 A
59030 CCACCTGTAC
Statistics
Matches: 65, Mismatches: 4, Indels: 6
0.87 0.05 0.08
Matches are distributed among these distances:
34 31 0.48
35 1 0.02
36 1 0.02
37 32 0.49
ACGTcount: A:0.36, C:0.33, G:0.07, T:0.24
Consensus pattern (37 bp):
ATAATACCAATGTACCTGTACCACCAACTGTACCACC
Left flanking sequence: Indices 58421 -- 58920
TGACGGCTCGGATCTGGGAGACGGGCCCGATCGTAAATTACTATATATGGATGGAGAGTATGGGC
GGAGCGAGGGTGCGAGCTAAGGTGGTGCGAGCTAAGGTGGTGAGAGCTAAGGGTGCAGGTGTTGT
GTTATTGTGGTGTATGGCCGTGTTGTGGCCGTGTTAGTGTGACCGTGTTATAGTCTGCAAAGCAG
TCCCAGCCTGCTCCACAATCGAGATAATAGCAATCTGTGCGTTCCAGATGACCAGGTCAGATAAT
ACCACCGTACTGGGTGCCAATAATCAATTGTACGCTGTGCAACCGGTACCCTGTTCAACCTGTAC
CAATAATACCCTGTAGCAACTCTAGCATGGTTCTTTCTGTTCCAGATGTATAATACCTGTACCAC
CCGGACCTATAATACCGTCCCACCCGATAATACCTCTGTAATAATACCAATGTACCTATCATTAC
CAACACCTGTACCATCACCAGCAATAATACCACTGTACTGCCCCG
Right flanking sequence: Indices 59030 -- 59529
CCACCTGTACCACCACAGCCACCACCTGTACCACTGCACGTTTCTGTTGCATCGGACAACGCAGC
CATCCGACATCGCAGCCATCCGACATCGCAGCCATCCAACGCAGCTCATACCGCATTCTCACGTC
ACCGTCCATCACGTCACCGCAGCGTCACCTCACCCACGGCCCAAGCCTTATTGTGCCCATTAGTA
ATGGCTGACTCGTCGTGTGACACATGCCTATTTTTACCCAGGCGTATTCACTTGACGGTCCGTCC
CAAGCCTCCGAGGTATTTTTGCCGGCAGATCTCGCATGGGGGCTGCGAAAAGCCACTCGGTGGTG
TGGACGTAACTCGGAAATGTGTCTTTGTCGGAGGCTCATCGAGGCTCGGGCTCCGTCGTGTGCAA
CTGCCTTCGCGAGCATGGAGGCCCATTATCGGGCCCAAAAAATAGTCGTCTGATGCGTGATTAGC
GTGTGGGCAGTGCACCTTCGCCGCGGCTCGGTTACATGGGCCATC
Found at i:59022 original size:12 final size:12
Alignment explanation
Indices: 59005--59031 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
58995 ATACTAATGT
59005 ACCTGTACAACC
1 ACCTGTACAACC
59017 ACCTGTACAACC
1 ACCTGTACAACC
59029 ACC
1 ACC
59032 ACCTGTACCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.33, C:0.44, G:0.07, T:0.15
Consensus pattern (12 bp):
ACCTGTACAACC
Left flanking sequence: Indices 58505 -- 59004
AGGTGGTGCGAGCTAAGGTGGTGAGAGCTAAGGGTGCAGGTGTTGTGTTATTGTGGTGTATGGCC
GTGTTGTGGCCGTGTTAGTGTGACCGTGTTATAGTCTGCAAAGCAGTCCCAGCCTGCTCCACAAT
CGAGATAATAGCAATCTGTGCGTTCCAGATGACCAGGTCAGATAATACCACCGTACTGGGTGCCA
ATAATCAATTGTACGCTGTGCAACCGGTACCCTGTTCAACCTGTACCAATAATACCCTGTAGCAA
CTCTAGCATGGTTCTTTCTGTTCCAGATGTATAATACCTGTACCACCCGGACCTATAATACCGTC
CCACCCGATAATACCTCTGTAATAATACCAATGTACCTATCATTACCAACACCTGTACCATCACC
AGCAATAATACCACTGTACTGCCCCGATAATACCAATGTACCTTTACCACCAACTGTACCACCAT
AATACCAATGTACCTGTACCACCTGTACCACCATAATACTAATGT
Right flanking sequence: Indices 59032 -- 59531
ACCTGTACCACCACAGCCACCACCTGTACCACTGCACGTTTCTGTTGCATCGGACAACGCAGCCA
TCCGACATCGCAGCCATCCGACATCGCAGCCATCCAACGCAGCTCATACCGCATTCTCACGTCAC
CGTCCATCACGTCACCGCAGCGTCACCTCACCCACGGCCCAAGCCTTATTGTGCCCATTAGTAAT
GGCTGACTCGTCGTGTGACACATGCCTATTTTTACCCAGGCGTATTCACTTGACGGTCCGTCCCA
AGCCTCCGAGGTATTTTTGCCGGCAGATCTCGCATGGGGGCTGCGAAAAGCCACTCGGTGGTGTG
GACGTAACTCGGAAATGTGTCTTTGTCGGAGGCTCATCGAGGCTCGGGCTCCGTCGTGTGCAACT
GCCTTCGCGAGCATGGAGGCCCATTATCGGGCCCAAAAAATAGTCGTCTGATGCGTGATTAGCGT
GTGGGCAGTGCACCTTCGCCGCGGCTCGGTTACATGGGCCATCGA
Found at i:59034 original size:15 final size:15
Alignment explanation
Indices: 59014--59045 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
59004 TACCTGTACA
59014 ACCACCTGTACAACC
1 ACCACCTGTACAACC
*
59029 ACCACCTGTACCACC
1 ACCACCTGTACAACC
59044 AC
1 AC
59046 AGCCACCACC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.31, C:0.50, G:0.06, T:0.12
Consensus pattern (15 bp):
ACCACCTGTACAACC
Left flanking sequence: Indices 58514 -- 59013
GAGCTAAGGTGGTGAGAGCTAAGGGTGCAGGTGTTGTGTTATTGTGGTGTATGGCCGTGTTGTGG
CCGTGTTAGTGTGACCGTGTTATAGTCTGCAAAGCAGTCCCAGCCTGCTCCACAATCGAGATAAT
AGCAATCTGTGCGTTCCAGATGACCAGGTCAGATAATACCACCGTACTGGGTGCCAATAATCAAT
TGTACGCTGTGCAACCGGTACCCTGTTCAACCTGTACCAATAATACCCTGTAGCAACTCTAGCAT
GGTTCTTTCTGTTCCAGATGTATAATACCTGTACCACCCGGACCTATAATACCGTCCCACCCGAT
AATACCTCTGTAATAATACCAATGTACCTATCATTACCAACACCTGTACCATCACCAGCAATAAT
ACCACTGTACTGCCCCGATAATACCAATGTACCTTTACCACCAACTGTACCACCATAATACCAAT
GTACCTGTACCACCTGTACCACCATAATACTAATGTACCTGTACA
Right flanking sequence: Indices 59046 -- 59545
AGCCACCACCTGTACCACTGCACGTTTCTGTTGCATCGGACAACGCAGCCATCCGACATCGCAGC
CATCCGACATCGCAGCCATCCAACGCAGCTCATACCGCATTCTCACGTCACCGTCCATCACGTCA
CCGCAGCGTCACCTCACCCACGGCCCAAGCCTTATTGTGCCCATTAGTAATGGCTGACTCGTCGT
GTGACACATGCCTATTTTTACCCAGGCGTATTCACTTGACGGTCCGTCCCAAGCCTCCGAGGTAT
TTTTGCCGGCAGATCTCGCATGGGGGCTGCGAAAAGCCACTCGGTGGTGTGGACGTAACTCGGAA
ATGTGTCTTTGTCGGAGGCTCATCGAGGCTCGGGCTCCGTCGTGTGCAACTGCCTTCGCGAGCAT
GGAGGCCCATTATCGGGCCCAAAAAATAGTCGTCTGATGCGTGATTAGCGTGTGGGCAGTGCACC
TTCGCCGCGGCTCGGTTACATGGGCCATCGACACGCCCACACGCT
Found at i:59041 original size:12 final size:12
Alignment explanation
Indices: 59005--59063 Score: 52
Period size: 12 Copynumber: 4.9 Consensus size: 12
58995 ATACTAATGT
*
59005 ACCTGTACAACC
1 ACCTGTACCACC
59017 ACCTGTACAACCACC
1 ACCTGT---ACCACC
59032 ACCTGTACCACC
1 ACCTGTACCACC
*
59044 A-CAG--CCACC
1 ACCTGTACCACC
59053 ACCTGTACCAC
1 ACCTGTACCAC
59064 TGCACGTTTC
Statistics
Matches: 38, Mismatches: 3, Indels: 12
0.72 0.06 0.23
Matches are distributed among these distances:
9 6 0.16
10 2 0.05
11 2 0.05
12 17 0.45
15 11 0.29
ACGTcount: A:0.31, C:0.47, G:0.08, T:0.14
Consensus pattern (12 bp):
ACCTGTACCACC
Left flanking sequence: Indices 58505 -- 59004
AGGTGGTGCGAGCTAAGGTGGTGAGAGCTAAGGGTGCAGGTGTTGTGTTATTGTGGTGTATGGCC
GTGTTGTGGCCGTGTTAGTGTGACCGTGTTATAGTCTGCAAAGCAGTCCCAGCCTGCTCCACAAT
CGAGATAATAGCAATCTGTGCGTTCCAGATGACCAGGTCAGATAATACCACCGTACTGGGTGCCA
ATAATCAATTGTACGCTGTGCAACCGGTACCCTGTTCAACCTGTACCAATAATACCCTGTAGCAA
CTCTAGCATGGTTCTTTCTGTTCCAGATGTATAATACCTGTACCACCCGGACCTATAATACCGTC
CCACCCGATAATACCTCTGTAATAATACCAATGTACCTATCATTACCAACACCTGTACCATCACC
AGCAATAATACCACTGTACTGCCCCGATAATACCAATGTACCTTTACCACCAACTGTACCACCAT
AATACCAATGTACCTGTACCACCTGTACCACCATAATACTAATGT
Right flanking sequence: Indices 59064 -- 59563
TGCACGTTTCTGTTGCATCGGACAACGCAGCCATCCGACATCGCAGCCATCCGACATCGCAGCCA
TCCAACGCAGCTCATACCGCATTCTCACGTCACCGTCCATCACGTCACCGCAGCGTCACCTCACC
CACGGCCCAAGCCTTATTGTGCCCATTAGTAATGGCTGACTCGTCGTGTGACACATGCCTATTTT
TACCCAGGCGTATTCACTTGACGGTCCGTCCCAAGCCTCCGAGGTATTTTTGCCGGCAGATCTCG
CATGGGGGCTGCGAAAAGCCACTCGGTGGTGTGGACGTAACTCGGAAATGTGTCTTTGTCGGAGG
CTCATCGAGGCTCGGGCTCCGTCGTGTGCAACTGCCTTCGCGAGCATGGAGGCCCATTATCGGGC
CCAAAAAATAGTCGTCTGATGCGTGATTAGCGTGTGGGCAGTGCACCTTCGCCGCGGCTCGGTTA
CATGGGCCATCGACACGCCCACACGCTTTCGGGAGGTCCTGCCTC
Found at i:59103 original size:16 final size:16
Alignment explanation
Indices: 59079--59131 Score: 88
Period size: 16 Copynumber: 3.3 Consensus size: 16
59069 GTTTCTGTTG
* *
59079 CATCGGACAACGCAGC
1 CATCCGACATCGCAGC
59095 CATCCGACATCGCAGC
1 CATCCGACATCGCAGC
59111 CATCCGACATCGCAGC
1 CATCCGACATCGCAGC
59127 CATCC
1 CATCC
59132 AACGCAGCTC
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 35 1.00
ACGTcount: A:0.26, C:0.43, G:0.19, T:0.11
Consensus pattern (16 bp):
CATCCGACATCGCAGC
Left flanking sequence: Indices 58579 -- 59078
CCGTGTTAGTGTGACCGTGTTATAGTCTGCAAAGCAGTCCCAGCCTGCTCCACAATCGAGATAAT
AGCAATCTGTGCGTTCCAGATGACCAGGTCAGATAATACCACCGTACTGGGTGCCAATAATCAAT
TGTACGCTGTGCAACCGGTACCCTGTTCAACCTGTACCAATAATACCCTGTAGCAACTCTAGCAT
GGTTCTTTCTGTTCCAGATGTATAATACCTGTACCACCCGGACCTATAATACCGTCCCACCCGAT
AATACCTCTGTAATAATACCAATGTACCTATCATTACCAACACCTGTACCATCACCAGCAATAAT
ACCACTGTACTGCCCCGATAATACCAATGTACCTTTACCACCAACTGTACCACCATAATACCAAT
GTACCTGTACCACCTGTACCACCATAATACTAATGTACCTGTACAACCACCTGTACAACCACCAC
CTGTACCACCACAGCCACCACCTGTACCACTGCACGTTTCTGTTG
Right flanking sequence: Indices 59132 -- 59631
AACGCAGCTCATACCGCATTCTCACGTCACCGTCCATCACGTCACCGCAGCGTCACCTCACCCAC
GGCCCAAGCCTTATTGTGCCCATTAGTAATGGCTGACTCGTCGTGTGACACATGCCTATTTTTAC
CCAGGCGTATTCACTTGACGGTCCGTCCCAAGCCTCCGAGGTATTTTTGCCGGCAGATCTCGCAT
GGGGGCTGCGAAAAGCCACTCGGTGGTGTGGACGTAACTCGGAAATGTGTCTTTGTCGGAGGCTC
ATCGAGGCTCGGGCTCCGTCGTGTGCAACTGCCTTCGCGAGCATGGAGGCCCATTATCGGGCCCA
AAAAATAGTCGTCTGATGCGTGATTAGCGTGTGGGCAGTGCACCTTCGCCGCGGCTCGGTTACAT
GGGCCATCGACACGCCCACACGCTTTCGGGAGGTCCTGCCTCCGGCTCCAGCACCTCGAATGTAA
CCTGGTCGTAATTCCGGGGAAAATACCGACAATAACTTCCTGGTT
Found at i:63473 original size:14 final size:16
Alignment explanation
Indices: 63453--63512 Score: 85
Period size: 14 Copynumber: 4.1 Consensus size: 16
63443 TGGGGCTGGT
63453 GGGTTAG-GAGTGGGC
1 GGGTTAGTGAGTGGGC
63468 -GGTTAG-GAGTGGGC
1 GGGTTAGTGAGTGGGC
63482 GGGTTAGTGA--GGGC
1 GGGTTAGTGAGTGGGC
63496 GGGTTAGTGAGTGGGC
1 GGGTTAGTGAGTGGGC
63512 G
1 G
63513 TGTGTCGGGT
Statistics
Matches: 41, Mismatches: 0, Indels: 7
0.85 0.00 0.15
Matches are distributed among these distances:
14 28 0.68
15 6 0.15
16 7 0.17
ACGTcount: A:0.13, C:0.07, G:0.58, T:0.22
Consensus pattern (16 bp):
GGGTTAGTGAGTGGGC
Left flanking sequence: Indices 62953 -- 63452
TCATCCCACCACTAGGGCAATTGTCAGCTTACAATCGAGAGGGGAGCGAGGTCTACAGAACAATG
GAGAGGGACCCGGCGACAGGGACGGCGATAGAGACAGACGACAACAGAGAGAAAAATGAGGACCG
GTCGGGTTTCAGAGGGGTAGAGCACGCCCCTCCGGTGCTTCTTTGGCGTTGGGTGCCCTCGCCTG
TGGTTCTGTGACGATCTCCGCCAGGCACTGGCTGATTGTAATCACAAACACAATGGCAGCCACCG
CGGTGGGTGCACGCTCGGTGGCCCGTCGGCAATGCCCGTATTCGGGGAGGCCGCTGGATTGAGAG
TTAACTCCGGCGTCACATGGACGACCCCACCGAGGGGAGACAATGGGGTGGGCTTCATCGTCGTA
TAAGCACGCCGGGTAGACGACGAGGCTCAAGCGGTGTCTGCTGGAGGGTGCGTTTGTGGCCGGTG
TGGCGGTGGAACGGACTTAGAAATTACGAGGGTGGTGGGGCTGGT
Right flanking sequence: Indices 63513 -- 64012
TGTGTCGGGTGTCTGCGGACACACTGATTATAATGATAAGAGTGCTTTATTGTTACGGAGAAAAT
AGAGCTGAAGGGAGAATGGAGAGAAAGAGAAGTGGAAGAAATGGAAAATTGGAGAATTGGAGAAA
TGGAGAATTGGAGACATGGAAAAAACGGTAGAGAATGGTAGAGAAATGGAAGAATGGAGTAAGGG
AAGAAAAGGGGGGAAGCGTTAGAGAAATGGTACAGAAATGGTAAAGAAATGGAATTGTAGACATG
GAACAAAGGGTAGATAATGGCAGAGAAACGCTAGAAAAAATGGAAGAAATGGTAGCGAAATGTTA
GCAAAATGGTAGCAAAATGAAAAAAGAACTAGAGAATCGCTAGAAAACCTTCAGAGAAACGAAGG
AAAATGGTAGAGAGACGGTAGAGACTGTAAAGACGATAGAGAAAATATCACAGAAACCACACATT
GTTCTTGTTTTCTTTGCTCCCCTGTCACCTAATCGCTACTATTCG
Found at i:63617 original size:9 final size:9
Alignment explanation
Indices: 63605--63713 Score: 52
Period size: 8 Copynumber: 12.6 Consensus size: 9
63595 GGAGAGAAAG
*
63605 AGAAGTGGA
1 AGAAATGGA
63614 AGAAATGGA
1 AGAAATGGA
*
63623 A-AATTGG-
1 AGAAATGGA
*
63630 AGAATTGG-
1 AGAAATGGA
63638 AGAAATGG-
1 AGAAATGGA
*
63646 AGAATTGG-
1 AGAAATGGA
*
63654 AGACATGGA
1 AGAAATGGA
* * *
63663 AAAAACGGT
1 AGAAATGGA
63672 AGAGAATGGTA
1 AGA-AATGG-A
63683 GAGAAATGGA
1 -AGAAATGGA
63693 AG-AATGG-
1 AGAAATGGA
* *
63700 AGTAAGGGA
1 AGAAATGGA
63709 AGAAA
1 AGAAA
63714 AGGGGGGAAG
Statistics
Matches: 78, Mismatches: 15, Indels: 14
0.73 0.14 0.13
Matches are distributed among these distances:
7 3 0.04
8 40 0.51
9 22 0.28
10 5 0.06
11 5 0.06
12 3 0.04
ACGTcount: A:0.48, C:0.02, G:0.36, T:0.15
Consensus pattern (9 bp):
AGAAATGGA
Left flanking sequence: Indices 63105 -- 63604
CACGCCCCTCCGGTGCTTCTTTGGCGTTGGGTGCCCTCGCCTGTGGTTCTGTGACGATCTCCGCC
AGGCACTGGCTGATTGTAATCACAAACACAATGGCAGCCACCGCGGTGGGTGCACGCTCGGTGGC
CCGTCGGCAATGCCCGTATTCGGGGAGGCCGCTGGATTGAGAGTTAACTCCGGCGTCACATGGAC
GACCCCACCGAGGGGAGACAATGGGGTGGGCTTCATCGTCGTATAAGCACGCCGGGTAGACGACG
AGGCTCAAGCGGTGTCTGCTGGAGGGTGCGTTTGTGGCCGGTGTGGCGGTGGAACGGACTTAGAA
ATTACGAGGGTGGTGGGGCTGGTGGGTTAGGAGTGGGCGGTTAGGAGTGGGCGGGTTAGTGAGGG
CGGGTTAGTGAGTGGGCGTGTGTCGGGTGTCTGCGGACACACTGATTATAATGATAAGAGTGCTT
TATTGTTACGGAGAAAATAGAGCTGAAGGGAGAATGGAGAGAAAG
Right flanking sequence: Indices 63714 -- 64213
AGGGGGGAAGCGTTAGAGAAATGGTACAGAAATGGTAAAGAAATGGAATTGTAGACATGGAACAA
AGGGTAGATAATGGCAGAGAAACGCTAGAAAAAATGGAAGAAATGGTAGCGAAATGTTAGCAAAA
TGGTAGCAAAATGAAAAAAGAACTAGAGAATCGCTAGAAAACCTTCAGAGAAACGAAGGAAAATG
GTAGAGAGACGGTAGAGACTGTAAAGACGATAGAGAAAATATCACAGAAACCACACATTGTTCTT
GTTTTCTTTGCTCCCCTGTCACCTAATCGCTACTATTCGCTGGCAGCTCCCCCTCCCGCCACCCA
GCCACCGGGGCCCCAGCCACCCGGCCACCCAGCCACCCTCCTGGTCCACCCCGTGCGTCCTGCGG
AGTTTGCGTCCGGCGATAGCCCCGGAATGTGCGGGCTGGTCTGGTCCACATGGGGTCACATGGGC
GATGACGTGATAACCATCTGGCATTGATCTAGTCGTCCGGGGCAA
Found at i:63635 original size:8 final size:8
Alignment explanation
Indices: 63604--63656 Score: 61
Period size: 8 Copynumber: 6.5 Consensus size: 8
63594 TGGAGAGAAA
*
63604 GAGAAGTG
1 GAGAATTG
*
63612 GAAGAAATG
1 G-AGAATTG
*
63621 GAAAATTG
1 GAGAATTG
63629 GAGAATTG
1 GAGAATTG
*
63637 GAGAAATG
1 GAGAATTG
63645 GAGAATTG
1 GAGAATTG
63653 GAGA
1 GAGA
63657 CATGGAAAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
8 31 0.82
9 7 0.18
ACGTcount: A:0.45, C:0.00, G:0.38, T:0.17
Consensus pattern (8 bp):
GAGAATTG
Left flanking sequence: Indices 63104 -- 63603
GCACGCCCCTCCGGTGCTTCTTTGGCGTTGGGTGCCCTCGCCTGTGGTTCTGTGACGATCTCCGC
CAGGCACTGGCTGATTGTAATCACAAACACAATGGCAGCCACCGCGGTGGGTGCACGCTCGGTGG
CCCGTCGGCAATGCCCGTATTCGGGGAGGCCGCTGGATTGAGAGTTAACTCCGGCGTCACATGGA
CGACCCCACCGAGGGGAGACAATGGGGTGGGCTTCATCGTCGTATAAGCACGCCGGGTAGACGAC
GAGGCTCAAGCGGTGTCTGCTGGAGGGTGCGTTTGTGGCCGGTGTGGCGGTGGAACGGACTTAGA
AATTACGAGGGTGGTGGGGCTGGTGGGTTAGGAGTGGGCGGTTAGGAGTGGGCGGGTTAGTGAGG
GCGGGTTAGTGAGTGGGCGTGTGTCGGGTGTCTGCGGACACACTGATTATAATGATAAGAGTGCT
TTATTGTTACGGAGAAAATAGAGCTGAAGGGAGAATGGAGAGAAA
Right flanking sequence: Indices 63657 -- 64156
CATGGAAAAAACGGTAGAGAATGGTAGAGAAATGGAAGAATGGAGTAAGGGAAGAAAAGGGGGGA
AGCGTTAGAGAAATGGTACAGAAATGGTAAAGAAATGGAATTGTAGACATGGAACAAAGGGTAGA
TAATGGCAGAGAAACGCTAGAAAAAATGGAAGAAATGGTAGCGAAATGTTAGCAAAATGGTAGCA
AAATGAAAAAAGAACTAGAGAATCGCTAGAAAACCTTCAGAGAAACGAAGGAAAATGGTAGAGAG
ACGGTAGAGACTGTAAAGACGATAGAGAAAATATCACAGAAACCACACATTGTTCTTGTTTTCTT
TGCTCCCCTGTCACCTAATCGCTACTATTCGCTGGCAGCTCCCCCTCCCGCCACCCAGCCACCGG
GGCCCCAGCCACCCGGCCACCCAGCCACCCTCCTGGTCCACCCCGTGCGTCCTGCGGAGTTTGCG
TCCGGCGATAGCCCCGGAATGTGCGGGCTGGTCTGGTCCACATGG
Found at i:63638 original size:16 final size:16
Alignment explanation
Indices: 63604--63662 Score: 66
Period size: 16 Copynumber: 3.6 Consensus size: 16
63594 TGGAGAGAAA
* *
63604 GAGAAGTGGAAGAAATG
1 GAGAAATGG-AGAATTG
63621 GA-AAATTGGAGAATTG
1 GAGAAA-TGGAGAATTG
63637 GAGAAATGGAGAATTG
1 GAGAAATGGAGAATTG
*
63653 GAGACATGGA
1 GAGAAATGGA
63663 AAAAACGGTA
Statistics
Matches: 37, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
16 29 0.78
17 8 0.22
ACGTcount: A:0.44, C:0.02, G:0.37, T:0.17
Consensus pattern (16 bp):
GAGAAATGGAGAATTG
Left flanking sequence: Indices 63104 -- 63603
GCACGCCCCTCCGGTGCTTCTTTGGCGTTGGGTGCCCTCGCCTGTGGTTCTGTGACGATCTCCGC
CAGGCACTGGCTGATTGTAATCACAAACACAATGGCAGCCACCGCGGTGGGTGCACGCTCGGTGG
CCCGTCGGCAATGCCCGTATTCGGGGAGGCCGCTGGATTGAGAGTTAACTCCGGCGTCACATGGA
CGACCCCACCGAGGGGAGACAATGGGGTGGGCTTCATCGTCGTATAAGCACGCCGGGTAGACGAC
GAGGCTCAAGCGGTGTCTGCTGGAGGGTGCGTTTGTGGCCGGTGTGGCGGTGGAACGGACTTAGA
AATTACGAGGGTGGTGGGGCTGGTGGGTTAGGAGTGGGCGGTTAGGAGTGGGCGGGTTAGTGAGG
GCGGGTTAGTGAGTGGGCGTGTGTCGGGTGTCTGCGGACACACTGATTATAATGATAAGAGTGCT
TTATTGTTACGGAGAAAATAGAGCTGAAGGGAGAATGGAGAGAAA
Right flanking sequence: Indices 63663 -- 64162
AAAAACGGTAGAGAATGGTAGAGAAATGGAAGAATGGAGTAAGGGAAGAAAAGGGGGGAAGCGTT
AGAGAAATGGTACAGAAATGGTAAAGAAATGGAATTGTAGACATGGAACAAAGGGTAGATAATGG
CAGAGAAACGCTAGAAAAAATGGAAGAAATGGTAGCGAAATGTTAGCAAAATGGTAGCAAAATGA
AAAAAGAACTAGAGAATCGCTAGAAAACCTTCAGAGAAACGAAGGAAAATGGTAGAGAGACGGTA
GAGACTGTAAAGACGATAGAGAAAATATCACAGAAACCACACATTGTTCTTGTTTTCTTTGCTCC
CCTGTCACCTAATCGCTACTATTCGCTGGCAGCTCCCCCTCCCGCCACCCAGCCACCGGGGCCCC
AGCCACCCGGCCACCCAGCCACCCTCCTGGTCCACCCCGTGCGTCCTGCGGAGTTTGCGTCCGGC
GATAGCCCCGGAATGTGCGGGCTGGTCTGGTCCACATGGGGTCAC
Found at i:63646 original size:24 final size:25
Alignment explanation
Indices: 63604--63656 Score: 81
Period size: 24 Copynumber: 2.2 Consensus size: 25
63594 TGGAGAGAAA
63604 GAGAAGTGGAAGAAATGGAAAATTG
1 GAGAAGTGGAAGAAATGGAAAATTG
* *
63629 GAGAATTGG-AGAAATGGAGAATTG
1 GAGAAGTGGAAGAAATGGAAAATTG
63653 GAGA
1 GAGA
63657 CATGGAAAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
24 18 0.69
25 8 0.31
ACGTcount: A:0.45, C:0.00, G:0.38, T:0.17
Consensus pattern (25 bp):
GAGAAGTGGAAGAAATGGAAAATTG
Left flanking sequence: Indices 63104 -- 63603
GCACGCCCCTCCGGTGCTTCTTTGGCGTTGGGTGCCCTCGCCTGTGGTTCTGTGACGATCTCCGC
CAGGCACTGGCTGATTGTAATCACAAACACAATGGCAGCCACCGCGGTGGGTGCACGCTCGGTGG
CCCGTCGGCAATGCCCGTATTCGGGGAGGCCGCTGGATTGAGAGTTAACTCCGGCGTCACATGGA
CGACCCCACCGAGGGGAGACAATGGGGTGGGCTTCATCGTCGTATAAGCACGCCGGGTAGACGAC
GAGGCTCAAGCGGTGTCTGCTGGAGGGTGCGTTTGTGGCCGGTGTGGCGGTGGAACGGACTTAGA
AATTACGAGGGTGGTGGGGCTGGTGGGTTAGGAGTGGGCGGTTAGGAGTGGGCGGGTTAGTGAGG
GCGGGTTAGTGAGTGGGCGTGTGTCGGGTGTCTGCGGACACACTGATTATAATGATAAGAGTGCT
TTATTGTTACGGAGAAAATAGAGCTGAAGGGAGAATGGAGAGAAA
Right flanking sequence: Indices 63657 -- 64156
CATGGAAAAAACGGTAGAGAATGGTAGAGAAATGGAAGAATGGAGTAAGGGAAGAAAAGGGGGGA
AGCGTTAGAGAAATGGTACAGAAATGGTAAAGAAATGGAATTGTAGACATGGAACAAAGGGTAGA
TAATGGCAGAGAAACGCTAGAAAAAATGGAAGAAATGGTAGCGAAATGTTAGCAAAATGGTAGCA
AAATGAAAAAAGAACTAGAGAATCGCTAGAAAACCTTCAGAGAAACGAAGGAAAATGGTAGAGAG
ACGGTAGAGACTGTAAAGACGATAGAGAAAATATCACAGAAACCACACATTGTTCTTGTTTTCTT
TGCTCCCCTGTCACCTAATCGCTACTATTCGCTGGCAGCTCCCCCTCCCGCCACCCAGCCACCGG
GGCCCCAGCCACCCGGCCACCCAGCCACCCTCCTGGTCCACCCCGTGCGTCCTGCGGAGTTTGCG
TCCGGCGATAGCCCCGGAATGTGCGGGCTGGTCTGGTCCACATGG
Found at i:63746 original size:11 final size:11
Alignment explanation
Indices: 63730--63759 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
63720 GAAGCGTTAG
*
63730 AGAAATGGTAC
1 AGAAATGGTAA
63741 AGAAATGGTAA
1 AGAAATGGTAA
63752 AGAAATGG
1 AGAAATGG
63760 AATTGTAGAC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.50, C:0.03, G:0.30, T:0.17
Consensus pattern (11 bp):
AGAAATGGTAA
Left flanking sequence: Indices 63230 -- 63729
GTGGCCCGTCGGCAATGCCCGTATTCGGGGAGGCCGCTGGATTGAGAGTTAACTCCGGCGTCACA
TGGACGACCCCACCGAGGGGAGACAATGGGGTGGGCTTCATCGTCGTATAAGCACGCCGGGTAGA
CGACGAGGCTCAAGCGGTGTCTGCTGGAGGGTGCGTTTGTGGCCGGTGTGGCGGTGGAACGGACT
TAGAAATTACGAGGGTGGTGGGGCTGGTGGGTTAGGAGTGGGCGGTTAGGAGTGGGCGGGTTAGT
GAGGGCGGGTTAGTGAGTGGGCGTGTGTCGGGTGTCTGCGGACACACTGATTATAATGATAAGAG
TGCTTTATTGTTACGGAGAAAATAGAGCTGAAGGGAGAATGGAGAGAAAGAGAAGTGGAAGAAAT
GGAAAATTGGAGAATTGGAGAAATGGAGAATTGGAGACATGGAAAAAACGGTAGAGAATGGTAGA
GAAATGGAAGAATGGAGTAAGGGAAGAAAAGGGGGGAAGCGTTAG
Right flanking sequence: Indices 63760 -- 64259
AATTGTAGACATGGAACAAAGGGTAGATAATGGCAGAGAAACGCTAGAAAAAATGGAAGAAATGG
TAGCGAAATGTTAGCAAAATGGTAGCAAAATGAAAAAAGAACTAGAGAATCGCTAGAAAACCTTC
AGAGAAACGAAGGAAAATGGTAGAGAGACGGTAGAGACTGTAAAGACGATAGAGAAAATATCACA
GAAACCACACATTGTTCTTGTTTTCTTTGCTCCCCTGTCACCTAATCGCTACTATTCGCTGGCAG
CTCCCCCTCCCGCCACCCAGCCACCGGGGCCCCAGCCACCCGGCCACCCAGCCACCCTCCTGGTC
CACCCCGTGCGTCCTGCGGAGTTTGCGTCCGGCGATAGCCCCGGAATGTGCGGGCTGGTCTGGTC
CACATGGGGTCACATGGGCGATGACGTGATAACCATCTGGCATTGATCTAGTCGTCCGGGGCAAA
ATCCCGCAACCACGGGGAGCAACAATGGCCGCGGGTGCCCACCGC
Found at i:63834 original size:11 final size:11
Alignment explanation
Indices: 63819--63856 Score: 58
Period size: 11 Copynumber: 3.5 Consensus size: 11
63809 AAAATGGAAG
*
63819 AAATGGTAGCG
1 AAATGGTAGCA
*
63830 AAATGTTAGCA
1 AAATGGTAGCA
63841 AAATGGTAGCA
1 AAATGGTAGCA
63852 AAATG
1 AAATG
63857 AAAAAAGAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
11 24 1.00
ACGTcount: A:0.45, C:0.08, G:0.26, T:0.21
Consensus pattern (11 bp):
AAATGGTAGCA
Left flanking sequence: Indices 63319 -- 63818
AATGGGGTGGGCTTCATCGTCGTATAAGCACGCCGGGTAGACGACGAGGCTCAAGCGGTGTCTGC
TGGAGGGTGCGTTTGTGGCCGGTGTGGCGGTGGAACGGACTTAGAAATTACGAGGGTGGTGGGGC
TGGTGGGTTAGGAGTGGGCGGTTAGGAGTGGGCGGGTTAGTGAGGGCGGGTTAGTGAGTGGGCGT
GTGTCGGGTGTCTGCGGACACACTGATTATAATGATAAGAGTGCTTTATTGTTACGGAGAAAATA
GAGCTGAAGGGAGAATGGAGAGAAAGAGAAGTGGAAGAAATGGAAAATTGGAGAATTGGAGAAAT
GGAGAATTGGAGACATGGAAAAAACGGTAGAGAATGGTAGAGAAATGGAAGAATGGAGTAAGGGA
AGAAAAGGGGGGAAGCGTTAGAGAAATGGTACAGAAATGGTAAAGAAATGGAATTGTAGACATGG
AACAAAGGGTAGATAATGGCAGAGAAACGCTAGAAAAAATGGAAG
Right flanking sequence: Indices 63857 -- 64356
AAAAAAGAACTAGAGAATCGCTAGAAAACCTTCAGAGAAACGAAGGAAAATGGTAGAGAGACGGT
AGAGACTGTAAAGACGATAGAGAAAATATCACAGAAACCACACATTGTTCTTGTTTTCTTTGCTC
CCCTGTCACCTAATCGCTACTATTCGCTGGCAGCTCCCCCTCCCGCCACCCAGCCACCGGGGCCC
CAGCCACCCGGCCACCCAGCCACCCTCCTGGTCCACCCCGTGCGTCCTGCGGAGTTTGCGTCCGG
CGATAGCCCCGGAATGTGCGGGCTGGTCTGGTCCACATGGGGTCACATGGGCGATGACGTGATAA
CCATCTGGCATTGATCTAGTCGTCCGGGGCAAAATCCCGCAACCACGGGGAGCAACAATGGCCGC
GGGTGCCCACCGCAGGGCCTGCCCCGAGGGCACTCTGCCAGGCTCCTGGGGCCCTCCGCGGCCCG
GGGCTCCGCTGCCGACATTTGCCCGCGTCACTCCCCTCCCCCACT
Found at i:64069 original size:16 final size:16
Alignment explanation
Indices: 64031--64076 Score: 67
Period size: 15 Copynumber: 2.9 Consensus size: 16
64021 TCCCCCTCCC
*
64031 GCCACCCAGCCACCGG
1 GCCACCCAGCCACCCG
*
64047 GGC-CCCAGCCACCCG
1 GCCACCCAGCCACCCG
64062 GCCACCCAGCCACCC
1 GCCACCCAGCCACCC
64077 TCCTGGTCCA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
15 13 0.50
16 13 0.50
ACGTcount: A:0.17, C:0.61, G:0.22, T:0.00
Consensus pattern (16 bp):
GCCACCCAGCCACCCG
Left flanking sequence: Indices 63531 -- 64030
ACACACTGATTATAATGATAAGAGTGCTTTATTGTTACGGAGAAAATAGAGCTGAAGGGAGAATG
GAGAGAAAGAGAAGTGGAAGAAATGGAAAATTGGAGAATTGGAGAAATGGAGAATTGGAGACATG
GAAAAAACGGTAGAGAATGGTAGAGAAATGGAAGAATGGAGTAAGGGAAGAAAAGGGGGGAAGCG
TTAGAGAAATGGTACAGAAATGGTAAAGAAATGGAATTGTAGACATGGAACAAAGGGTAGATAAT
GGCAGAGAAACGCTAGAAAAAATGGAAGAAATGGTAGCGAAATGTTAGCAAAATGGTAGCAAAAT
GAAAAAAGAACTAGAGAATCGCTAGAAAACCTTCAGAGAAACGAAGGAAAATGGTAGAGAGACGG
TAGAGACTGTAAAGACGATAGAGAAAATATCACAGAAACCACACATTGTTCTTGTTTTCTTTGCT
CCCCTGTCACCTAATCGCTACTATTCGCTGGCAGCTCCCCCTCCC
Right flanking sequence: Indices 64077 -- 64576
TCCTGGTCCACCCCGTGCGTCCTGCGGAGTTTGCGTCCGGCGATAGCCCCGGAATGTGCGGGCTG
GTCTGGTCCACATGGGGTCACATGGGCGATGACGTGATAACCATCTGGCATTGATCTAGTCGTCC
GGGGCAAAATCCCGCAACCACGGGGAGCAACAATGGCCGCGGGTGCCCACCGCAGGGCCTGCCCC
GAGGGCACTCTGCCAGGCTCCTGGGGCCCTCCGCGGCCCGGGGCTCCGCTGCCGACATTTGCCCG
CGTCACTCCCCTCCCCCACTGGGCGGGGATCAGCTGAGTGGACAAGAAAATTTGGTGCATATGCC
GGTGGAGGGACGCGGTGCAAGGGCGAGGGAGGTGCAGTGCGTCGAGTGGTGTGGGAGGTGCACCG
GGCCCGCTCCGGTGGTGTGGTCGCTGCACCGAATGGTGTGGACGCGGCAGAGGTGGTGTGGAAGC
AGCAGCGGTGGGGTGATTGCCCCCGGGGTCGAGGACCCCAGATCC
Found at i:64525 original size:20 final size:20
Alignment explanation
Indices: 64500--64542 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
64490 CTGCACCGAA
* *
64500 TGGTGTGGACGCGGCAGAGG
1 TGGTGTGGAAGCAGCAGAGG
*
64520 TGGTGTGGAAGCAGCAGCGG
1 TGGTGTGGAAGCAGCAGAGG
64540 TGG
1 TGG
64543 GGTGATTGCC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.16, C:0.14, G:0.53, T:0.16
Consensus pattern (20 bp):
TGGTGTGGAAGCAGCAGAGG
Left flanking sequence: Indices 64000 -- 64499
TCGCTACTATTCGCTGGCAGCTCCCCCTCCCGCCACCCAGCCACCGGGGCCCCAGCCACCCGGCC
ACCCAGCCACCCTCCTGGTCCACCCCGTGCGTCCTGCGGAGTTTGCGTCCGGCGATAGCCCCGGA
ATGTGCGGGCTGGTCTGGTCCACATGGGGTCACATGGGCGATGACGTGATAACCATCTGGCATTG
ATCTAGTCGTCCGGGGCAAAATCCCGCAACCACGGGGAGCAACAATGGCCGCGGGTGCCCACCGC
AGGGCCTGCCCCGAGGGCACTCTGCCAGGCTCCTGGGGCCCTCCGCGGCCCGGGGCTCCGCTGCC
GACATTTGCCCGCGTCACTCCCCTCCCCCACTGGGCGGGGATCAGCTGAGTGGACAAGAAAATTT
GGTGCATATGCCGGTGGAGGGACGCGGTGCAAGGGCGAGGGAGGTGCAGTGCGTCGAGTGGTGTG
GGAGGTGCACCGGGCCCGCTCCGGTGGTGTGGTCGCTGCACCGAA
Right flanking sequence: Indices 64543 -- 65042
GGTGATTGCCCCCGGGGTCGAGGACCCCAGATCCATGCGCGACAAAAATAATAATCAGGGACGTA
GACGAGGATGTGGGGGTGGGGGGAAGGAAGGGGAGGTGGGGAGGTGTGGGCGGCAAGAGGGTGGT
GGCAGTGGCGGTAACGTGGCAGTGGCGGTGGGAGGTGGCGGTGTAGTGCCGTTTAGGAGCAGTTA
TTGAGTGTTGTGAATTTATTGTCTATAATTACCACTTTGAGAAATGGAAAATGGTGGTTATTGTG
GAGTAAGAGTCTAGTATTACCAATGCTACCACCAGTTAGCCAGTAATCACTTTACCAACACGACC
ATCACTTTTCCACCACGTATTAAACACCAATAATTAAATAAATCACCACTAACATCTCCAGTGCC
AATTAATCCACCACTATTCCAATTTAAATTCCACCACCAACTCCACCACTTTACTTCATCTTCTC
CTTCATTCCCACCAGTATCCCTACCAATTACCCCCCACCGTTACC
Found at i:65175 original size:11 final size:11
Alignment explanation
Indices: 65159--65183 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
65149 CACCATCTAA
65159 ACCCTTCCACC
1 ACCCTTCCACC
65170 ACCCTTCCACC
1 ACCCTTCCACC
65181 ACC
1 ACC
65184 ACCTTCTATG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.20, C:0.64, G:0.00, T:0.16
Consensus pattern (11 bp):
ACCCTTCCACC
Left flanking sequence: Indices 64659 -- 65158
GGCAAGAGGGTGGTGGCAGTGGCGGTAACGTGGCAGTGGCGGTGGGAGGTGGCGGTGTAGTGCCG
TTTAGGAGCAGTTATTGAGTGTTGTGAATTTATTGTCTATAATTACCACTTTGAGAAATGGAAAA
TGGTGGTTATTGTGGAGTAAGAGTCTAGTATTACCAATGCTACCACCAGTTAGCCAGTAATCACT
TTACCAACACGACCATCACTTTTCCACCACGTATTAAACACCAATAATTAAATAAATCACCACTA
ACATCTCCAGTGCCAATTAATCCACCACTATTCCAATTTAAATTCCACCACCAACTCCACCACTT
TACTTCATCTTCTCCTTCATTCCCACCAGTATCCCTACCAATTACCCCCCACCGTTACCCCTCCA
GTTACCCCACATACACATACACATACACCAACACACCCACCCACACACACACACCACCACCAATA
CCATCCCAAAACACCCTCTAAACCCCACCCCAAATCACCATCTAA
Right flanking sequence: Indices 65184 -- 65683
ACCTTCTATGCTTATTATTTATTAGATTATCCGTAAAACTGGTCCACCTCGTGCGGCGGAATCTC
GGTGTAGTAGCTCTGGAGCGCCCGCTTCAACGCCGGCACCAACTTGTCCCACCGCAAGATGCGCA
CCTCCTTGTCAAACCCCCGCGGCTTGCGGATCTCGTACCCCATGATCCGCTTGGCCAACTCCACT
CTATAATCCTGGTTGGTGGGGGCCCCCAGCAGGGTGCGCTCGTTCATCCGCAGCGAAATGGGCCG
CTTCAGCCAGAACGGCACGAGGTTCAGCCGCACCCGGCCCCGCTCGCGGCGGCGCTCGGCGGGGT
CCTTGACCTGGGTCCCGATCAAGAGCTCGACGATCTCAATCACCTCCACCGAGGTGATGTAGTAC
TGGTACAGCGCGTCGCCCTCGGTCTTGATGTAGCGGTGGCCCAGCTCGTCGTCCAGCAGCTCGTA
CTCGTCCAGCGGGCGCACCATGCACTCGAGGCACAGCACCTCCAC
Found at i:66445 original size:12 final size:12
Alignment explanation
Indices: 66428--66464 Score: 56
Period size: 12 Copynumber: 3.1 Consensus size: 12
66418 AGTCCTGCCC
66428 CAGCGGCACCAG
1 CAGCGGCACCAG
*
66440 CAGCGGCCCCAG
1 CAGCGGCACCAG
*
66452 CAGCGGCGCCAG
1 CAGCGGCACCAG
66464 C
1 C
66465 GGCCAGTGCT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.19, C:0.46, G:0.35, T:0.00
Consensus pattern (12 bp):
CAGCGGCACCAG
Left flanking sequence: Indices 65928 -- 66427
GGGCGGGTCAGCGAGCCCCCGGCCAGCACCCCGCGGAGCACCCGGTAGCGGCGCATGGGCCCGCG
GGGCATGGCGCCAGGGGGCGCGAGCGGGGCAAGCGCCCCGGGGTGCAGGTGGGGCGCGGGGTGGT
GCGGGTCGTAGTAGCCGTCGTAGGCGTCGACCCCGGGCGCGGGCTCGTGCTTGACGGGGGTGTGC
AACGGGGTGTGGTCAAGGTACTGGCCCTGGATGCTAGGAGAAATGAACCCGGGCGCCGGCGCCAG
CCACTCGGGCTGGGGCGGGTACTCGGAGTAGTAGTACAGCGGCGGCTGCGAGTCCGTCAGCGGGG
CCGAGCTCCCGGCGCCGGCGCTGGAAGCGTCGTCCGCTGTGTACGGCGGCATCAACTGGTACTGG
CTCTGGGGCACCTCCTCCGCCAGATGCGGGTACGCCAACCGCGGCGGCGGCGGCAAGTGCGGCGG
CACCGCGTAGCCCCCGGGCGGCGGGTACAAGTGGTAGTCCTGCCC
Right flanking sequence: Indices 66465 -- 66964
GGCCAGTGCTGGTGGTCGTAGTTGGCGAGGGGCGGCGCCGGCCCCTGGGGCACCACCAGCAGCAG
CAGCAGCATGTGCGCGAGCCCCGGGTGCGCGGGCCCGGGGGGCGCGGGGGGAGGAGGCCCCACCT
CCAAGTCGTAGAGGTCGGGGGCGGGCAAGTCGTCGGCCGGTGGTAGTTCTTCAAACATTTCAACG
GCGGGATGGGTGATCCGGAACATGGCACAGGCTTCGGCAGGGGCGAGCTCAACCACACTTATACT
GGTGGTGGTCGCTGGCGGGGGTTGGTGGTGGACAAAAACAGCAACTCTGTACTATATATGTGGTC
GCTTTTTGCGGTTTGCAGGTGCCTACAAAATAATGTGGGCAAAAAATACTGGCCGGGAAAATACT
GCGTTTGCGTCCCCGTGCAGGACAGAAAATACTGCTCAAAAGAAATTTCCGTAATGAGAATGCCG
ACGGGGAGTGCATAGCTGGCGAGGGGCCGTTGGGGGAGGAGGCTG
Found at i:68124 original size:14 final size:15
Alignment explanation
Indices: 68099--68178 Score: 74
Period size: 14 Copynumber: 5.3 Consensus size: 15
68089 GTAAATAAAC
*
68099 AGAGGGGAGAAGGGA
1 AGAGGAGAGAAGGGA
68114 AG-GGAGAGAAGGG-
1 AGAGGAGAGAAGGGA
*
68127 AGAGAAGAGAAGGGA
1 AGAGGAGAGAAGGGA
*
68142 GAGAAGAGAGAAGGGGA
1 -AGAGGAGAGAA-GGGA
* *
68159 CAGAGAAGAGAAGAGA
1 -AGAGGAGAGAAGGGA
68175 AGAG
1 AGAG
68179 AGAAAGAGAG
Statistics
Matches: 53, Mismatches: 8, Indels: 8
0.77 0.12 0.12
Matches are distributed among these distances:
13 2 0.04
14 20 0.38
15 6 0.11
16 12 0.23
17 13 0.25
ACGTcount: A:0.47, C:0.01, G:0.51, T:0.00
Consensus pattern (15 bp):
AGAGGAGAGAAGGGA
Left flanking sequence: Indices 67599 -- 68098
GCTCCGCTCTATTGTCTCAAACTTTAATACTAGTGAACGGTGTTTACGGTGCGGAACGACGTCAC
CAGGCGTGGCGCGGTCGCGAATTATGTGCGGCCAGGTGTAAACCCAGATCTATTACATCATTGGC
GAGCGACGGTTACGGGGGCCACAAATGCCTCACCATCGTGCTCGAGATAAGCACATGCTCGCGGC
GTCTCCGCTCGGAACCAACCGGGTCCACGGAGGTGGGGTGATCGCCGCGGTCGCGGACCCGGGCC
ACAGCTGACTCGGGTGACGCCAAGACCACGGGCTACGTTATCTCGCCATCCGCTCCCGGGCGCTC
TCGATCGCGGTTGCCAGCTGTCGGCTTCCGGTTTGGGACTTTGTGGAGACCGGGATCGTTCACCG
CATGAAAAAGAAATAGAGAGGTTTTCCCGCAACGAGAAATATGCTTGATATTTTTGGATCCCCCA
AATGGATAGATGGACCCCGCAAAGGTCGTAACGAAGTAAATAAAC
Right flanking sequence: Indices 68179 -- 68678
AGAAAGAGAGAAAGAGAGAAAGAGAGAAAGAGAGAAAGAGAGAAAGAGAAAAAGAGAAAAAGAGA
AGAGAAAGAGAAAAAGAGGAGAATACAGAAGAGAAAACAGAAGAGAAAGAGAGCAGAAAACAGAG
AAAAAAAGTAGATAAGAGAAGAGAGAAGAGAAGGAAAAAGAGAAGAGAAAATAGAGAGAGAAAAC
TACAAATTATGTGGCACGATGGACCGTAGTCTCCCCTTACACGTGGCACTACCCACTATCTCTGT
ACCATCTGTACCCTGTGCCCTGTGCCATCTCCACCTCTGTTACCACCCTCCAATAAAAAATATCC
GGACTGATACGGGCTCGTCGGCGTTTTCTCAGTTCTCCCCGATGGATAGTTTTTCGGTACATTTG
AGTCATCGTATTTTACGATTTAGCGGGCGGTGTGCGATGGAGAGGGGCTGTTCGCTGTAGGTTGC
TGCCTTGAAAATAACTGTGCGAAGAACCCCCGTGACGAGCCTCTC
Found at i:68133 original size:23 final size:23
Alignment explanation
Indices: 68101--68156 Score: 82
Period size: 23 Copynumber: 2.6 Consensus size: 23
68091 AAATAAACAG
68101 AGGG-GAGAAGGGAAGGGAGAGA
1 AGGGAGAGAAGGGAAGGGAGAGA
*
68123 AGGGAGAGAAGAGAAGGGAGAGA
1 AGGGAGAGAAGGGAAGGGAGAGA
68146 A--GAGAGAAGGG
1 AGGGAGAGAAGGG
68157 GACAGAGAAG
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
21 9 0.29
22 4 0.13
23 18 0.58
ACGTcount: A:0.45, C:0.00, G:0.55, T:0.00
Consensus pattern (23 bp):
AGGGAGAGAAGGGAAGGGAGAGA
Left flanking sequence: Indices 67601 -- 68100
TCCGCTCTATTGTCTCAAACTTTAATACTAGTGAACGGTGTTTACGGTGCGGAACGACGTCACCA
GGCGTGGCGCGGTCGCGAATTATGTGCGGCCAGGTGTAAACCCAGATCTATTACATCATTGGCGA
GCGACGGTTACGGGGGCCACAAATGCCTCACCATCGTGCTCGAGATAAGCACATGCTCGCGGCGT
CTCCGCTCGGAACCAACCGGGTCCACGGAGGTGGGGTGATCGCCGCGGTCGCGGACCCGGGCCAC
AGCTGACTCGGGTGACGCCAAGACCACGGGCTACGTTATCTCGCCATCCGCTCCCGGGCGCTCTC
GATCGCGGTTGCCAGCTGTCGGCTTCCGGTTTGGGACTTTGTGGAGACCGGGATCGTTCACCGCA
TGAAAAAGAAATAGAGAGGTTTTCCCGCAACGAGAAATATGCTTGATATTTTTGGATCCCCCAAA
TGGATAGATGGACCCCGCAAAGGTCGTAACGAAGTAAATAAACAG
Right flanking sequence: Indices 68157 -- 68656
GACAGAGAAGAGAAGAGAAGAGAGAAAGAGAGAAAGAGAGAAAGAGAGAAAGAGAGAAAGAGAGA
AAGAGAAAAAGAGAAAAAGAGAAGAGAAAGAGAAAAAGAGGAGAATACAGAAGAGAAAACAGAAG
AGAAAGAGAGCAGAAAACAGAGAAAAAAAGTAGATAAGAGAAGAGAGAAGAGAAGGAAAAAGAGA
AGAGAAAATAGAGAGAGAAAACTACAAATTATGTGGCACGATGGACCGTAGTCTCCCCTTACACG
TGGCACTACCCACTATCTCTGTACCATCTGTACCCTGTGCCCTGTGCCATCTCCACCTCTGTTAC
CACCCTCCAATAAAAAATATCCGGACTGATACGGGCTCGTCGGCGTTTTCTCAGTTCTCCCCGAT
GGATAGTTTTTCGGTACATTTGAGTCATCGTATTTTACGATTTAGCGGGCGGTGTGCGATGGAGA
GGGGCTGTTCGCTGTAGGTTGCTGCCTTGAAAATAACTGTGCGAA
Found at i:68180 original size:12 final size:12
Alignment explanation
Indices: 68126--68370 Score: 132
Period size: 12 Copynumber: 21.6 Consensus size: 12
68116 GGAGAGAAGG
68126 GAGAGAAGAGAA
1 GAGAGAAGAGAA
68138 G-G-G-AGAGAA
1 GAGAGAAGAGAA
* *
68147 GAGAGAAGGGGA
1 GAGAGAAGAGAA
*
68159 CAGAGAAGAGAA
1 GAGAGAAGAGAA
68171 GAGA-AGAGAGAA
1 GAGAGA-AGAGAA
68183 -AGAG-AGA-AA
1 GAGAGAAGAGAA
68192 GAGAGAA-AG-A
1 GAGAGAAGAGAA
68202 GAGA-AAGAG-A
1 GAGAGAAGAGAA
*
68212 GAAAG-AGAGAA
1 GAGAGAAGAGAA
68223 -AGAGAA-A-AA
1 GAGAGAAGAGAA
*
68232 GAGAAAAAGAGAA
1 GAG-AGAAGAGAA
68245 GAGA-AAGAGAA
1 GAGAGAAGAGAA
* *
68256 -AAAGAGGAGAA
1 GAGAGAAGAGAA
* *
68267 TACAGAAGAGAA
1 GAGAGAAGAGAA
* *
68279 AACAGAAGAGAAA
1 GAGAGAAGAG-AA
* *
68292 GAGAGCAGAAAA
1 GAGAGAAGAGAA
* * *
68304 CAGAGAAAAAAA
1 GAGAGAAGAGAA
*
68316 GTAGATAAGAGAA
1 G-AGAGAAGAGAA
68329 GAGAGAAGAGAA
1 GAGAGAAGAGAA
*
68341 G-GAAAAAGAGAA
1 GAG-AGAAGAGAA
* *
68353 GAGAAAATAG-A
1 GAGAGAAGAGAA
68364 GAGAGAA
1 GAGAGAA
68371 AACTACAAAT
Statistics
Matches: 182, Mismatches: 29, Indels: 45
0.71 0.11 0.18
Matches are distributed among these distances:
9 13 0.07
10 33 0.18
11 33 0.18
12 80 0.44
13 23 0.13
ACGTcount: A:0.61, C:0.02, G:0.35, T:0.02
Consensus pattern (12 bp):
GAGAGAAGAGAA
Left flanking sequence: Indices 67626 -- 68125
TACTAGTGAACGGTGTTTACGGTGCGGAACGACGTCACCAGGCGTGGCGCGGTCGCGAATTATGT
GCGGCCAGGTGTAAACCCAGATCTATTACATCATTGGCGAGCGACGGTTACGGGGGCCACAAATG
CCTCACCATCGTGCTCGAGATAAGCACATGCTCGCGGCGTCTCCGCTCGGAACCAACCGGGTCCA
CGGAGGTGGGGTGATCGCCGCGGTCGCGGACCCGGGCCACAGCTGACTCGGGTGACGCCAAGACC
ACGGGCTACGTTATCTCGCCATCCGCTCCCGGGCGCTCTCGATCGCGGTTGCCAGCTGTCGGCTT
CCGGTTTGGGACTTTGTGGAGACCGGGATCGTTCACCGCATGAAAAAGAAATAGAGAGGTTTTCC
CGCAACGAGAAATATGCTTGATATTTTTGGATCCCCCAAATGGATAGATGGACCCCGCAAAGGTC
GTAACGAAGTAAATAAACAGAGGGGAGAAGGGAAGGGAGAGAAGG
Right flanking sequence: Indices 68371 -- 68870
AACTACAAATTATGTGGCACGATGGACCGTAGTCTCCCCTTACACGTGGCACTACCCACTATCTC
TGTACCATCTGTACCCTGTGCCCTGTGCCATCTCCACCTCTGTTACCACCCTCCAATAAAAAATA
TCCGGACTGATACGGGCTCGTCGGCGTTTTCTCAGTTCTCCCCGATGGATAGTTTTTCGGTACAT
TTGAGTCATCGTATTTTACGATTTAGCGGGCGGTGTGCGATGGAGAGGGGCTGTTCGCTGTAGGT
TGCTGCCTTGAAAATAACTGTGCGAAGAACCCCCGTGACGAGCCTCTCCGCTCGAGATCACGCAG
AGAAGCCCAAACAACGAGATCGTAAGAGCCTCGCTGCACCTGCGACAGCCCATGCTGCTTCGATA
TCACGCTTTTTCGCGTTTCGCAATTATACCCAAGGGTCAATCCCGACACGGGACAAGAAAAAAGT
AACTATTCCCCGCAAGGAATGTCACAAGAAGGCCCGTAGGCTCGA
Found at i:68187 original size:8 final size:8
Alignment explanation
Indices: 68160--68296 Score: 128
Period size: 8 Copynumber: 17.5 Consensus size: 8
68150 AGAAGGGGAC
68160 AGAG-AAG
1 AGAGAAAG
68167 AGAAGAGAAG
1 AG-AGA-AAG
68177 AGAGAAAG
1 AGAGAAAG
68185 AGAGAAAG
1 AGAGAAAG
68193 AGAGAAAG
1 AGAGAAAG
68201 AGAGAAAG
1 AGAGAAAG
68209 AGAGAAAG
1 AGAGAAAG
68217 AGAGAAAG
1 AGAGAAAG
68225 AGA-AAA-
1 AGAGAAAG
68231 AGAGAAA-
1 AGAGAAAG
*
68238 A-AGAGA-
1 AGAGAAAG
68244 AGAGAAAG
1 AGAGAAAG
*
68252 AGAAAAAG
1 AGAGAAAG
*
68260 AG-GAGAAT
1 AGAGA-AAG
*
68268 ACAG-AAG
1 AGAGAAAG
*
68275 AGAAAACAG
1 AGAGAA-AG
68284 AAGAGAAAG
1 -AGAGAAAG
68293 AGAG
1 AGAG
68297 CAGAAAACAG
Statistics
Matches: 109, Mismatches: 10, Indels: 21
0.78 0.07 0.15
Matches are distributed among these distances:
6 8 0.07
7 18 0.17
8 65 0.60
9 8 0.07
10 10 0.09
ACGTcount: A:0.64, C:0.01, G:0.34, T:0.01
Consensus pattern (8 bp):
AGAGAAAG
Left flanking sequence: Indices 67660 -- 68159
TCACCAGGCGTGGCGCGGTCGCGAATTATGTGCGGCCAGGTGTAAACCCAGATCTATTACATCAT
TGGCGAGCGACGGTTACGGGGGCCACAAATGCCTCACCATCGTGCTCGAGATAAGCACATGCTCG
CGGCGTCTCCGCTCGGAACCAACCGGGTCCACGGAGGTGGGGTGATCGCCGCGGTCGCGGACCCG
GGCCACAGCTGACTCGGGTGACGCCAAGACCACGGGCTACGTTATCTCGCCATCCGCTCCCGGGC
GCTCTCGATCGCGGTTGCCAGCTGTCGGCTTCCGGTTTGGGACTTTGTGGAGACCGGGATCGTTC
ACCGCATGAAAAAGAAATAGAGAGGTTTTCCCGCAACGAGAAATATGCTTGATATTTTTGGATCC
CCCAAATGGATAGATGGACCCCGCAAAGGTCGTAACGAAGTAAATAAACAGAGGGGAGAAGGGAA
GGGAGAGAAGGGAGAGAAGAGAAGGGAGAGAAGAGAGAAGGGGAC
Right flanking sequence: Indices 68297 -- 68796
CAGAAAACAGAGAAAAAAAGTAGATAAGAGAAGAGAGAAGAGAAGGAAAAAGAGAAGAGAAAATA
GAGAGAGAAAACTACAAATTATGTGGCACGATGGACCGTAGTCTCCCCTTACACGTGGCACTACC
CACTATCTCTGTACCATCTGTACCCTGTGCCCTGTGCCATCTCCACCTCTGTTACCACCCTCCAA
TAAAAAATATCCGGACTGATACGGGCTCGTCGGCGTTTTCTCAGTTCTCCCCGATGGATAGTTTT
TCGGTACATTTGAGTCATCGTATTTTACGATTTAGCGGGCGGTGTGCGATGGAGAGGGGCTGTTC
GCTGTAGGTTGCTGCCTTGAAAATAACTGTGCGAAGAACCCCCGTGACGAGCCTCTCCGCTCGAG
ATCACGCAGAGAAGCCCAAACAACGAGATCGTAAGAGCCTCGCTGCACCTGCGACAGCCCATGCT
GCTTCGATATCACGCTTTTTCGCGTTTCGCAATTATACCCAAGGG
Found at i:69498 original size:10 final size:10
Alignment explanation
Indices: 69479--69530 Score: 95
Period size: 10 Copynumber: 5.2 Consensus size: 10
69469 AGTGGGTAGT
69479 GTAGTTGGTG
1 GTAGTTGGTG
*
69489 GTAATTGGTG
1 GTAGTTGGTG
69499 GTAGTTGGTG
1 GTAGTTGGTG
69509 GTAGTTGGTG
1 GTAGTTGGTG
69519 GTAGTTGGTG
1 GTAGTTGGTG
69529 GT
1 GT
69531 GGGTGTTGGT
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 40 1.00
ACGTcount: A:0.12, C:0.00, G:0.48, T:0.40
Consensus pattern (10 bp):
GTAGTTGGTG
Left flanking sequence: Indices 68979 -- 69478
GTGTCTCAGATGACCCTGCTGCGGTCACATTGGGCTGTGTGCAGGCAGTAATCAAAATGAGAATC
AAAAAAGGTGGTTATCATGCATGCGCCGGAATAGCCGCCGTGCAGCCACTGCCTGGTCGTGCGCG
GCCCAGAGTTTCCACCAGGGGGTCGGATACGATATTATCGAGGCGTTGCAGGGTTTAGCCCGGGT
TAACAGGGATTGGCGGGTCGAGCCCGCGAGGGGAGGTTCGGGGGGAGGGTGCGGCGGTGGCAACG
GGGTAAGCTGATCAGGGGCCTGCGGCGACCCCTCCGCGGCGTCCCCGCTACTCCCCGTCGCGGGC
ATGTGCGTGACCGTCAGAGGATTGTCCGCTGGTGGAGCTGTGGGCTGTGTGCAGGCGGACGAGGC
AGGCGGATTTAGGGAAAGGTGGGGAAGTAGCCGCGTGGGTGTGGCTGGTGAGGGGGGGGTGGTTG
GGTGTGGGTGTGTGTGGGTAGTGGGTGGTATAGATAGTGGGTAGT
Right flanking sequence: Indices 69531 -- 70030
GGGTGTTGGTGGGTGGTGGATTTGATAGGAAATGTAACATGGTTGGATTCGATGTGACTTTGTGG
AATGGATGTTTATGGTGGTGGGTACCAATGGTGGGAATGGGTGGGATTGGGAGGTTTAAGACTGG
AAAATTCTCGGTGGACGTTTCGGGGGATCGTAGTTTTTTTCTCAGCAATAAAAGGCGGTGTTTGG
GGTGGTAGGCAGTGCTATGGTAGGCGGTGCGGTAAGCAGTGTAGTAGGCAGTGTGGTAGGTGTTG
TTCTGGTAGACAGTTTCATCAGGCATTGTGTGGTGGTTCTTCTTCCCATACCAACCATCGCCACT
GCCCACCCTTCCCCTTTGGATTTTCCCGGCTTTTGCTCGTGCCTTCCCTCACAGATATAGTCGAT
CGATTTAAAATTCGGTAAGGGCGGGCAGGCGTGGTGGGCGGGGTGGCTGTGCTCTGGGTGCGAAA
GGCGGGAAGGCGGGCATTGGCGCAGCAGGCACACCCGGGGGGCCC
Found at i:69540 original size:20 final size:20
Alignment explanation
Indices: 69479--69540 Score: 79
Period size: 20 Copynumber: 3.1 Consensus size: 20
69469 AGTGGGTAGT
**
69479 GTAGTTGGTGGTAATTGGTG
1 GTAGTTGGTGGTAGGTGGTG
*
69499 GTAGTTGGTGGTAGTTGGTG
1 GTAGTTGGTGGTAGGTGGTG
* *
69519 GTAGTTGGTGGTGGGTGTTG
1 GTAGTTGGTGGTAGGTGGTG
69539 GT
1 GT
69541 GGGTGGTGGA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.10, C:0.00, G:0.50, T:0.40
Consensus pattern (20 bp):
GTAGTTGGTGGTAGGTGGTG
Left flanking sequence: Indices 68979 -- 69478
GTGTCTCAGATGACCCTGCTGCGGTCACATTGGGCTGTGTGCAGGCAGTAATCAAAATGAGAATC
AAAAAAGGTGGTTATCATGCATGCGCCGGAATAGCCGCCGTGCAGCCACTGCCTGGTCGTGCGCG
GCCCAGAGTTTCCACCAGGGGGTCGGATACGATATTATCGAGGCGTTGCAGGGTTTAGCCCGGGT
TAACAGGGATTGGCGGGTCGAGCCCGCGAGGGGAGGTTCGGGGGGAGGGTGCGGCGGTGGCAACG
GGGTAAGCTGATCAGGGGCCTGCGGCGACCCCTCCGCGGCGTCCCCGCTACTCCCCGTCGCGGGC
ATGTGCGTGACCGTCAGAGGATTGTCCGCTGGTGGAGCTGTGGGCTGTGTGCAGGCGGACGAGGC
AGGCGGATTTAGGGAAAGGTGGGGAAGTAGCCGCGTGGGTGTGGCTGGTGAGGGGGGGGTGGTTG
GGTGTGGGTGTGTGTGGGTAGTGGGTGGTATAGATAGTGGGTAGT
Right flanking sequence: Indices 69541 -- 70040
GGGTGGTGGATTTGATAGGAAATGTAACATGGTTGGATTCGATGTGACTTTGTGGAATGGATGTT
TATGGTGGTGGGTACCAATGGTGGGAATGGGTGGGATTGGGAGGTTTAAGACTGGAAAATTCTCG
GTGGACGTTTCGGGGGATCGTAGTTTTTTTCTCAGCAATAAAAGGCGGTGTTTGGGGTGGTAGGC
AGTGCTATGGTAGGCGGTGCGGTAAGCAGTGTAGTAGGCAGTGTGGTAGGTGTTGTTCTGGTAGA
CAGTTTCATCAGGCATTGTGTGGTGGTTCTTCTTCCCATACCAACCATCGCCACTGCCCACCCTT
CCCCTTTGGATTTTCCCGGCTTTTGCTCGTGCCTTCCCTCACAGATATAGTCGATCGATTTAAAA
TTCGGTAAGGGCGGGCAGGCGTGGTGGGCGGGGTGGCTGTGCTCTGGGTGCGAAAGGCGGGAAGG
CGGGCATTGGCGCAGCAGGCACACCCGGGGGGCCCCGCCCCTTTA
Found at i:70465 original size:12 final size:12
Alignment explanation
Indices: 70448--70484 Score: 74
Period size: 12 Copynumber: 3.1 Consensus size: 12
70438 CAGCTTTCGC
70448 CCACTTTCTCCG
1 CCACTTTCTCCG
70460 CCACTTTCTCCG
1 CCACTTTCTCCG
70472 CCACTTTCTCCG
1 CCACTTTCTCCG
70484 C
1 C
70485 GACTGCTCTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 25 1.00
ACGTcount: A:0.08, C:0.51, G:0.08, T:0.32
Consensus pattern (12 bp):
CCACTTTCTCCG
Left flanking sequence: Indices 69948 -- 70447
GGCGTGGTGGGCGGGGTGGCTGTGCTCTGGGTGCGAAAGGCGGGAAGGCGGGCATTGGCGCAGCA
GGCACACCCGGGGGGCCCCGCCCCTTTATACCTCCATCCAACGGTCACTCGGCCCGGCGTTCGGA
ACTGACGGCAGTTATATATGGCGTTTTGCAACCGTTTCTTCTCGCACACGAGCCCTGCTGTGGAA
CGAAACTGTTTTATGTGTGGAACTGGCGCAGTCAGCGTGCTGAGATCGACGGTGGAACTAGATGG
TTGTGGAGGAGATTCGATCGGTTGTCACCGGATCTCTCCTTGCAATCTTGGGTGTTTCAGTTTTT
TCAGAATAGTACAAAAAGATTGTGAAACTAGTGCCAGGTGACGCTAAGGTGATCGTAGACGGGTT
CGAACCCGGGCAAAAACACCCCTCAAACGCCACCACAGCGCACTAGAGCTACTAAAGAACTGCTA
CAGCCCACCCCTACTCTTCTATCGGCGCAATTCCCCAGCTTTCGC
Right flanking sequence: Indices 70485 -- 70984
GACTGCTCTACCACTGAAACACCCGTGTTTGTGTCAATTTCAGGATCGTTCGATCAGGGGTGAAC
CAGAGCCAGAGCAGCGGCCAAAGGCAGCGGCCGCACCCCGCGTATAGCCCTGCCATACCCGCAGC
CCGGCTGAGCCACCGCCACCGCCACCGCAAGCAAACCCCGGCCAACGGTCTCAAAAACCGAATCA
GCCCACCCACCACAAGCCCCCCCATTACTAATCTACAACCGGTGATTTCCTGAAATTATTACCCT
CTCAGGCCAAATTCCAAGCGCAGTCAGGCTACGTGGCTAGTGCCACCACCTCGAGGTCCACGGGT
CACGAGACATTAGCCCACTTGCGGGGAAAACTCCCACGGCACTTAAGCCCTCCCGAGCTAAGCGA
GGTGCTGCCTCGGGAAGCACCGTCCGCCCCCTGTGGCCATGTCCCCCCACTTTTGCTTCTCCACC
CACTCAGGCGACTTACCCCTCCACCGAGGCGAATGGCCCCATCCA
Found at i:73978 original size:36 final size:35
Alignment explanation
Indices: 73921--74015 Score: 101
Period size: 33 Copynumber: 2.8 Consensus size: 35
73911 TTGGCCTGGG
*
73921 CGTACGCCTCC-T--CCAGCTTCTTGGCCGCGGCGT
1 CGTACGCCTCCTTGCCCTGCTTCTTGG-CGCGGCGT
* **
73954 CGTAGGCCTCCTTGCCCTGCTTCTT-G-GCGTTGT
1 CGTACGCCTCCTTGCCCTGCTTCTTGGCGCGGCGT
*
73987 GGTACGCCTCCTTGCCCTGCTTCTTGGCG
1 CGTACGCCTCCTTGCCCTGCTTCTTGGCG
74016 TTGTGGGCAG
Statistics
Matches: 51, Mismatches: 6, Indels: 8
0.78 0.09 0.12
Matches are distributed among these distances:
33 38 0.75
34 2 0.04
35 2 0.04
36 9 0.18
ACGTcount: A:0.04, C:0.38, G:0.27, T:0.31
Consensus pattern (35 bp):
CGTACGCCTCCTTGCCCTGCTTCTTGGCGCGGCGT
Left flanking sequence: Indices 73421 -- 73920
TCTTTCTCTCACACCTTCGTTTTCTCTACCTCACACTGACTAATGGCTCGTTTGTTCGCTATATA
TTTACGATTAGTACTTCTTGTACTTGGGGTAGTACTTGTCAAACAAGAGCTTGTCGGCCACCACC
AACCCAGTGATGATGGCGGCGTGGGCAGACACCACGATGGGGTTGTCCAAGTTGATTCTGTGGCG
GTCGGTGTAGCCAATGTACAACGCCGAGAGACCCACCGCAGACACCAAGCCCTGCACAACCACCA
CGGGGTTCTGCAACTCGGTCCACACCCGCGAGGCCAAGCGGTCCAACGACGCGGCAACGCGCTGG
CCAGCCCCGTTCAAGTACTGGTTGTCAAACGACTTCAAGTCACGTGACACGTCGTTGCAGAACGA
CTTGGCCTTGGCGTGGTACTCGCGCTCAATCAGCTCAAACTCCTTCTTGTACTCCTCAAACGCCT
GGCCACCCTGCTTCTTCAACTCGTCGTACTTGACCTTGGCCTGGG
Right flanking sequence: Indices 74016 -- 74515
TTGTGGGCAGCCGCGTTCAAATCACGCTCAATCTCCTTGCGCGACTGGTCAGCGTCCGCCTTCAA
CTCCTCAAACTCCTCGTCGGGCACGGTTTCAACGTTGCCCAGAGGGGTGGAGGTGGGCTCCACCG
TCGCGGGTTGGGGGAGCTTCTCCGCCTTGTTGACGGGTCCGCCCAGGGAAGCAGCTTTGGCGTAC
GACATATTTAATGGGGGTCAAAATTGGCGGGCGCACCCCGGTATATATACTGCCAGCGCGCCCCT
GGCACCTGCGCGAGCAAGCGGGCAATTCTCCGCCACACGCGGGCCGGGGACCTAGCGGAGTAAAC
GGGGTTGGTTGGCGGGCCCTTCGCGGGCGTGGCTACGTAGTTTTTATCTCGGGAGCTGGGCGGGG
GCGTCGTCCAGCCGTGGTCGTGCTCGGCCCGTATTCGCCACACTACGTTTGGTTGCTATGCACCC
GAATTTGCTTCTAACCTGCGGCTGCCGACAATTGCTACCGAGGCA
Found at i:73996 original size:33 final size:33
Alignment explanation
Indices: 73959--74021 Score: 126
Period size: 33 Copynumber: 1.9 Consensus size: 33
73949 GGCGTCGTAG
73959 GCCTCCTTGCCCTGCTTCTTGGCGTTGTGGTAC
1 GCCTCCTTGCCCTGCTTCTTGGCGTTGTGGTAC
73992 GCCTCCTTGCCCTGCTTCTTGGCGTTGTGG
1 GCCTCCTTGCCCTGCTTCTTGGCGTTGTGG
74022 GCAGCCGCGT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.02, C:0.33, G:0.29, T:0.37
Consensus pattern (33 bp):
GCCTCCTTGCCCTGCTTCTTGGCGTTGTGGTAC
Left flanking sequence: Indices 73459 -- 73958
ACTAATGGCTCGTTTGTTCGCTATATATTTACGATTAGTACTTCTTGTACTTGGGGTAGTACTTG
TCAAACAAGAGCTTGTCGGCCACCACCAACCCAGTGATGATGGCGGCGTGGGCAGACACCACGAT
GGGGTTGTCCAAGTTGATTCTGTGGCGGTCGGTGTAGCCAATGTACAACGCCGAGAGACCCACCG
CAGACACCAAGCCCTGCACAACCACCACGGGGTTCTGCAACTCGGTCCACACCCGCGAGGCCAAG
CGGTCCAACGACGCGGCAACGCGCTGGCCAGCCCCGTTCAAGTACTGGTTGTCAAACGACTTCAA
GTCACGTGACACGTCGTTGCAGAACGACTTGGCCTTGGCGTGGTACTCGCGCTCAATCAGCTCAA
ACTCCTTCTTGTACTCCTCAAACGCCTGGCCACCCTGCTTCTTCAACTCGTCGTACTTGACCTTG
GCCTGGGCGTACGCCTCCTCCAGCTTCTTGGCCGCGGCGTCGTAG
Right flanking sequence: Indices 74022 -- 74521
GCAGCCGCGTTCAAATCACGCTCAATCTCCTTGCGCGACTGGTCAGCGTCCGCCTTCAACTCCTC
AAACTCCTCGTCGGGCACGGTTTCAACGTTGCCCAGAGGGGTGGAGGTGGGCTCCACCGTCGCGG
GTTGGGGGAGCTTCTCCGCCTTGTTGACGGGTCCGCCCAGGGAAGCAGCTTTGGCGTACGACATA
TTTAATGGGGGTCAAAATTGGCGGGCGCACCCCGGTATATATACTGCCAGCGCGCCCCTGGCACC
TGCGCGAGCAAGCGGGCAATTCTCCGCCACACGCGGGCCGGGGACCTAGCGGAGTAAACGGGGTT
GGTTGGCGGGCCCTTCGCGGGCGTGGCTACGTAGTTTTTATCTCGGGAGCTGGGCGGGGGCGTCG
TCCAGCCGTGGTCGTGCTCGGCCCGTATTCGCCACACTACGTTTGGTTGCTATGCACCCGAATTT
GCTTCTAACCTGCGGCTGCCGACAATTGCTACCGAGGCAAAGCGC
Found at i:75119 original size:17 final size:17
Alignment explanation
Indices: 75097--75153 Score: 87
Period size: 17 Copynumber: 3.4 Consensus size: 17
75087 GGTGGTTTGG
*
75097 AGGGGTGGTTCTACTGT
1 AGGGGTGGTTCTACCGT
*
75114 AGGGGTGGCTCTACCGT
1 AGGGGTGGTTCTACCGT
*
75131 AGGGATGGTTCTACCGT
1 AGGGGTGGTTCTACCGT
75148 AGGGGT
1 AGGGGT
75154 TATGAAATCA
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 35 1.00
ACGTcount: A:0.14, C:0.16, G:0.42, T:0.28
Consensus pattern (17 bp):
AGGGGTGGTTCTACCGT
Left flanking sequence: Indices 74597 -- 75096
GTTTTACCCTGCTGTCGCTATATGTATGGAAGGTTCCGCATCGATTCGCTGCATAGTTGACACGG
ACGAACTGGGCCAGAAGTAGGGTGTGTCCACGCGATGGGTAGTGGTGGACGACGGCACCGCAGGC
CCCAGCAATCAGCATGTGCTGGATTTTTTTCACTTGCACCAGGCTCCGACTTTCTCCGGTGGCCA
ATGAACGCGAGTAATAACCTCGCTAAGCCAAGTGCAGTCGCGATCAAGGGGTAGTGGGGTGATGC
TGGGGAGGAGAAGGGCGTGAGAGACGGGGGTTGCCCGGGGATTGGGGCTTAGTGACGTGTTTCCA
GTGGGAATGCTGGCGGTGGGCAGCCGTTCCCAGCCGTAGGACGGCTCGCCAGGCGGGTTTGTGTA
ATTGCCTCGACAGCGGAAAAGTAGAAGTGGGGCAAGTGGGGCTGTCGTGGTGGGGCGAGACATGG
ATGGGCCGATTTGAGTGAAAGGAGGGATCTAGACGGGTGGTTTGG
Right flanking sequence: Indices 75154 -- 75653
TATGAAATCATGAAAGACACAATACGAATAATCAGTTGATGTCAGCGGGTGGCTATTGGCTTACA
AAAATCCAAGAGGGGGGTTAAAAAACAGGTACTGTGGGACACCCTTGATGGCTCTTGACCACGTA
TGGGCGAATAACTCACGCAACCGGCGGTGGCTTGAGCGTTCTCGTGTCATAACACACTGCCTACG
CACAATCACAACGCACTGGCTACTATACACAACCGTTGATTCGGTTTTCGCAGCCAAATGCAAGG
TGGAATTGGTAAGAGGCACGCCTGGAGAAGAACAGCAAACCATGGAGTAAGCCAACCGAACCACC
TAGACAGCCCACTAAAAGCTACACACACCACCAAACCACCAACCACCAACCACCACATTACCAGA
CCACCTCACACTCCATTTTCCCCCTTCACTTCCATTCATATTTTCCACCCACGTGACTCAGGTCC
CCAACCCTAACACCCTCTGCCTGCAGCGCGACGATTTTTTTTTCA
Found at i:75781 original size:18 final size:18
Alignment explanation
Indices: 75758--75813 Score: 76
Period size: 18 Copynumber: 3.1 Consensus size: 18
75748 AGACAGTTTG
* *
75758 GCGGTGACCGCGGTGGCC
1 GCGGTGGCCGTGGTGGCC
*
75776 GCGGTGGCCGTGGCGGCC
1 GCGGTGGCCGTGGTGGCC
*
75794 GTGGTGGCCGTGGTGGCC
1 GCGGTGGCCGTGGTGGCC
75812 GC
1 GC
75814 AGAGGCTTCC
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
18 32 1.00
ACGTcount: A:0.02, C:0.30, G:0.54, T:0.14
Consensus pattern (18 bp):
GCGGTGGCCGTGGTGGCC
Left flanking sequence: Indices 75258 -- 75757
CACCCTTGATGGCTCTTGACCACGTATGGGCGAATAACTCACGCAACCGGCGGTGGCTTGAGCGT
TCTCGTGTCATAACACACTGCCTACGCACAATCACAACGCACTGGCTACTATACACAACCGTTGA
TTCGGTTTTCGCAGCCAAATGCAAGGTGGAATTGGTAAGAGGCACGCCTGGAGAAGAACAGCAAA
CCATGGAGTAAGCCAACCGAACCACCTAGACAGCCCACTAAAAGCTACACACACCACCAAACCAC
CAACCACCAACCACCACATTACCAGACCACCTCACACTCCATTTTCCCCCTTCACTTCCATTCAT
ATTTTCCACCCACGTGACTCAGGTCCCCAACCCTAACACCCTCTGCCTGCAGCGCGACGATTTTT
TTTTCACTCGCCCAGTGTACCCTCCCCATTATCGATCGAAAACCAACCCCCCGGCTTTCCACGTA
ACATTCCGATAATAAAGATGTCCGAAGCTCCCAAGAGACAGTTTG
Right flanking sequence: Indices 75814 -- 76313
AGAGGCTTCCGCGACGAGGAGAAGGGGTGGACCCCCATCACCAAGTTGGGCCGTCTTGTAAAGGC
CGGCAAGATCACCTCCATCGAGGAGATCTACTTGCACTCGCTTGCCGTCAAGGAGTACCAGATCA
TCGACCAGCTCTTGCCCGAGTTGACCGATGAGGTGATGAAGATCCGCTCCGTCCAGAAGCAGACC
CGTGCCGGTCAGCGTACCCGCATGAAGGCTGTTGTTGTCATTGGTGACTCCAACGGCCACATTGG
TCTTGGTATCAAGACCGCCAAGGAGGTGGCCACCGCCATCAAGTCGGCCATCGTCATCGCCAAGT
TGTCGATCATCCCCATCCGTAGAGGTTACTGGGGTTCCAACTTGGGTGCCCCCCACTCGTTGCCC
TGCAAGGTCACCGGTAAGTGCGGTTCCGTTGCCGTCAGACTTATCCCCGCCCCCCGTGGTAAGGG
TATTGTTGCCTCGCCCGCTGTCAAGAAGTTGATGCAGTTGGCTGG
Found at i:75782 original size:9 final size:9
Alignment explanation
Indices: 75758--75813 Score: 67
Period size: 9 Copynumber: 6.2 Consensus size: 9
75748 AGACAGTTTG
*
75758 GCGGTGACC
1 GCGGTGGCC
75767 GCGGTGGCC
1 GCGGTGGCC
75776 GCGGTGGCC
1 GCGGTGGCC
* *
75785 GTGGCGGCC
1 GCGGTGGCC
*
75794 GTGGTGGCC
1 GCGGTGGCC
*
75803 GTGGTGGCC
1 GCGGTGGCC
75812 GC
1 GC
75814 AGAGGCTTCC
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
9 42 1.00
ACGTcount: A:0.02, C:0.30, G:0.54, T:0.14
Consensus pattern (9 bp):
GCGGTGGCC
Left flanking sequence: Indices 75258 -- 75757
CACCCTTGATGGCTCTTGACCACGTATGGGCGAATAACTCACGCAACCGGCGGTGGCTTGAGCGT
TCTCGTGTCATAACACACTGCCTACGCACAATCACAACGCACTGGCTACTATACACAACCGTTGA
TTCGGTTTTCGCAGCCAAATGCAAGGTGGAATTGGTAAGAGGCACGCCTGGAGAAGAACAGCAAA
CCATGGAGTAAGCCAACCGAACCACCTAGACAGCCCACTAAAAGCTACACACACCACCAAACCAC
CAACCACCAACCACCACATTACCAGACCACCTCACACTCCATTTTCCCCCTTCACTTCCATTCAT
ATTTTCCACCCACGTGACTCAGGTCCCCAACCCTAACACCCTCTGCCTGCAGCGCGACGATTTTT
TTTTCACTCGCCCAGTGTACCCTCCCCATTATCGATCGAAAACCAACCCCCCGGCTTTCCACGTA
ACATTCCGATAATAAAGATGTCCGAAGCTCCCAAGAGACAGTTTG
Right flanking sequence: Indices 75814 -- 76313
AGAGGCTTCCGCGACGAGGAGAAGGGGTGGACCCCCATCACCAAGTTGGGCCGTCTTGTAAAGGC
CGGCAAGATCACCTCCATCGAGGAGATCTACTTGCACTCGCTTGCCGTCAAGGAGTACCAGATCA
TCGACCAGCTCTTGCCCGAGTTGACCGATGAGGTGATGAAGATCCGCTCCGTCCAGAAGCAGACC
CGTGCCGGTCAGCGTACCCGCATGAAGGCTGTTGTTGTCATTGGTGACTCCAACGGCCACATTGG
TCTTGGTATCAAGACCGCCAAGGAGGTGGCCACCGCCATCAAGTCGGCCATCGTCATCGCCAAGT
TGTCGATCATCCCCATCCGTAGAGGTTACTGGGGTTCCAACTTGGGTGCCCCCCACTCGTTGCCC
TGCAAGGTCACCGGTAAGTGCGGTTCCGTTGCCGTCAGACTTATCCCCGCCCCCCGTGGTAAGGG
TATTGTTGCCTCGCCCGCTGTCAAGAAGTTGATGCAGTTGGCTGG
Found at i:76623 original size:16 final size:16
Alignment explanation
Indices: 76594--76632 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
76584 TGGATGTTAG
*
76594 TGGGGATTAGTTTGGA
1 TGGGGATTACTTTGGA
*
76610 TGGGGTTTACTTTGGA
1 TGGGGATTACTTTGGA
*
76626 TGTGGAT
1 TGGGGAT
76633 GTTAGCGCAG
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.15, C:0.03, G:0.41, T:0.41
Consensus pattern (16 bp):
TGGGGATTACTTTGGA
Left flanking sequence: Indices 76094 -- 76593
AGGAGGTGGCCACCGCCATCAAGTCGGCCATCGTCATCGCCAAGTTGTCGATCATCCCCATCCGT
AGAGGTTACTGGGGTTCCAACTTGGGTGCCCCCCACTCGTTGCCCTGCAAGGTCACCGGTAAGTG
CGGTTCCGTTGCCGTCAGACTTATCCCCGCCCCCCGTGGTAAGGGTATTGTTGCCTCGCCCGCTG
TCAAGAAGTTGATGCAGTTGGCTGGTGTTGAGGACGTCTACACCTCGTCTTCTGGTTCCACCAGA
ACCACCGAGAACACCTTGAAGGCTGCCTTCACTGCCATCGGTAACACCTACGGTTTCTTGACCCC
CAACTTGTGGACCGAGAACGCCTTGGCTGCCAACCCCCTTGACGTCTACGCCGAGGAGGCCGCCG
GCTCCAAGAGAAGATACTAAGTGTGTACTCTAATCTAGGTTAATGGTAATTGTAACAGAGTGTAG
TCTGGAAACTAGTTTGGAAGGGATTAGTTCGGATGTGGATGTTAG
Right flanking sequence: Indices 76633 -- 77132
GTTAGCGCAGTTTCTTGGTGTGCTTTTCTATCATTTACAGCGGAAAGCATTACTTGTGGCTGGTG
GGTGGGAAATGTGGGCTTAAGTATGGATTGCTGTTTCCTTAGCGGCTACTACCTGTGTATCTGCT
TTCGTCCTCGACTGGCGGAGTGCGTTTCCCGACTGTGCATTAGCCTTGGCACTAGCCCGATTAGT
ACCCAGCGCTGGCTACCAATGCAGCAGTCTTCAAAATAACGTTTGATTGCACTTCAGCCCACAGT
TAACGCACATCCAACCATTCAAAGACGCCACTTCTCATTTCAGTCGTAGTTTCGTAAGGTATTCT
TTCAATTAAAGGTACTATCCCAACTGATCGTATCCTTCCCCCCATATGACCGTATCTTCACCCCA
TTTGACCGTACCATTCCCCAGCTGCAGCGTTTGTAAGCGGGTTTACCCTCGTATATGGCACGGTT
ATGATAATCGTACGACCACCCTCTCCTGTGGCCAGGATGACGTGG
Found at i:77021 original size:21 final size:22
Alignment explanation
Indices: 76986--77032 Score: 69
Period size: 21 Copynumber: 2.2 Consensus size: 22
76976 CCCAACTGAT
*
76986 CGTATCCTTCCCCCCATATGAC
1 CGTATCCTTCACCCCATATGAC
*
77008 CGTAT-CTTCACCCCATTTGAC
1 CGTATCCTTCACCCCATATGAC
77029 CGTA
1 CGTA
77033 CCATTCCCCA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 18 0.78
22 5 0.22
ACGTcount: A:0.19, C:0.40, G:0.11, T:0.30
Consensus pattern (22 bp):
CGTATCCTTCACCCCATATGAC
Left flanking sequence: Indices 76486 -- 76985
TCCAAGAGAAGATACTAAGTGTGTACTCTAATCTAGGTTAATGGTAATTGTAACAGAGTGTAGTC
TGGAAACTAGTTTGGAAGGGATTAGTTCGGATGTGGATGTTAGTGGGGATTAGTTTGGATGGGGT
TTACTTTGGATGTGGATGTTAGCGCAGTTTCTTGGTGTGCTTTTCTATCATTTACAGCGGAAAGC
ATTACTTGTGGCTGGTGGGTGGGAAATGTGGGCTTAAGTATGGATTGCTGTTTCCTTAGCGGCTA
CTACCTGTGTATCTGCTTTCGTCCTCGACTGGCGGAGTGCGTTTCCCGACTGTGCATTAGCCTTG
GCACTAGCCCGATTAGTACCCAGCGCTGGCTACCAATGCAGCAGTCTTCAAAATAACGTTTGATT
GCACTTCAGCCCACAGTTAACGCACATCCAACCATTCAAAGACGCCACTTCTCATTTCAGTCGTA
GTTTCGTAAGGTATTCTTTCAATTAAAGGTACTATCCCAACTGAT
Right flanking sequence: Indices 77033 -- 77532
CCATTCCCCAGCTGCAGCGTTTGTAAGCGGGTTTACCCTCGTATATGGCACGGTTATGATAATCG
TACGACCACCCTCTCCTGTGGCCAGGATGACGTGGGTGACGTCGGCGATGGCCATTGCATCGTCG
TCAATCTCCCCCACAAAAAATATCTCGCAGCCACCTGGGACGAGCGATGAAAATAACGGAGGCGA
GATGGCGTGGGGGACCAGGGCGGGGACTCCGACGGTGGCACTCCGACTCTGTGCAACCCCGAGGC
CACCTCGAAAATAATTGGCCCGATTGGGAGAAACCCCGACACAAATTGCCCGTTCCAAGAGCAGT
GGTCTCGAGCCTGGGTTCGGGTGGGAGCCTACAATACGAAGGATGTACAATCAAGGGGTAGGGAT
AGTGCTTCCCCTCTTCGCCTGCTTCTTCCCCTCTCTTGCAACAATACCTCTAGTTCCCTACCGCA
CTTTGTTCTCCACCCTGCTACTTTGTGCCCGGCTTTGTGACACCC
Done.