Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: scaffold27
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 286625
ACGTcount: A:0.22, C:0.28, G:0.27, T:0.22
File 1 of 2
Found at i:233 original size:128 final size:128
Alignment explanation
Indices: 1--269 Score: 511
Period size: 128 Copynumber: 2.1 Consensus size: 128
1 GTGACCGGGGTGGGGTGGGGTGGGCCGACGGTGGCCACCCCTCTATATACTCTACATACCCAGCA
1 GTGACCGGGGTGGGGTGGGGTGGGCCGACGGTGGCCACCCCTCTATATACTCTACATACCCAGCA
*
66 AGGCGCCATGGCTGGGGTACCCCGGGTGGCTCAATGCTACCATCACAGCAGCATAGAGGTCCA
66 AGGCGCCATGGCTGGGGTACCCCGGGTGGCTCAACGCTACCATCACAGCAGCATAGAGGTCCA
129 GTGACCGGGGTGGGGTGGGGTGGGCCGACGGTGGCCACCCCTCTATATACTCTACATACCCAGCA
1 GTGACCGGGGTGGGGTGGGGTGGGCCGACGGTGGCCACCCCTCTATATACTCTACATACCCAGCA
*
194 AGGCGCCATGGCTGGGGTACCCCGGGTGGCTCAACGCTACCATCACAGTAGCATAGAGGTCCA
66 AGGCGCCATGGCTGGGGTACCCCGGGTGGCTCAACGCTACCATCACAGCAGCATAGAGGTCCA
*
257 GTGACCAGGGTGG
1 GTGACCGGGGTGG
270 CTAGTGTCTG
Statistics
Matches: 138, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
128 138 1.00
ACGTcount: A:0.19, C:0.29, G:0.35, T:0.17
Consensus pattern (128 bp):
GTGACCGGGGTGGGGTGGGGTGGGCCGACGGTGGCCACCCCTCTATATACTCTACATACCCAGCA
AGGCGCCATGGCTGGGGTACCCCGGGTGGCTCAACGCTACCATCACAGCAGCATAGAGGTCCA
Left flanking sequence: None
Right flanking sequence: Indices 270 -- 769
CTAGTGTCTGTTAGTAGTAGGCTGTGGCTGAGTGGTTGGTGGCTGGTGCCCCGAATACTTACTCC
AGATGGTTGAGGCTGAGGAAGTTGTAGATAAAAAAAATCAAAATCTGGGGGAAGCACCCATATTT
ATATCTCAGCGGCTGGGCTGAGGGGCGCGTAACGCTCTGTAGACAGGAGAGCGGGGAACGATATT
ATCGGCATACCAACTAGAAATCGGCACCCAAACAATGGGTGCCGATCGGTAATTTACGAGCAATT
GAGCCCGGGGAAGTTGGTATGGATAGCTAATGGTATCAAACACTGGTTTACATGCTTACTTGCCC
TGCGCTTCGTCTGTAGCGTGGTTAATTTAGACTCGAGGTGTAGACGCTGCATGACGCGCCTCTGG
ATGCGCGATCCCTAGGATCCGCCTGTATCTTGAAAAATGAGGATGGGTAGTTGAGAATGCCCATC
AGTTTTAGCCTTATTAGTTGGAACGCCACAACCCAAAGCCCAACG
Found at i:20739 original size:21 final size:21
Alignment explanation
Indices: 20715--20754 Score: 64
Period size: 21 Copynumber: 1.9 Consensus size: 21
20705 GTGTCGTCAT
20715 TTTCTTCCTCGGC-CTCTTCAC
1 TTTCTTCCTC-GCTCTCTTCAC
20736 TTTCTTCCTCGCTCTCTTC
1 TTTCTTCCTCGCTCTCTTC
20755 TTCGCTCTCT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 2 0.11
21 16 0.89
ACGTcount: A:0.03, C:0.42, G:0.07, T:0.47
Consensus pattern (21 bp):
TTTCTTCCTCGCTCTCTTCAC
Left flanking sequence: Indices 20215 -- 20714
GGTGGTGTCAACCTTAGCATCCACCAATGCTTGCTTCAATTGGGTGCCAAACAGGTCGTTCCCGA
CATTGCCAACCATCCGGACTTTGGTCTCCGAACAGGCGTTGAGTCGGGCAGTGGCCAAAGCCTCA
TTGAGACCCTTGCCGCCCAAATGGTTTTCGAAAGCGTCCGCTTGGTACGTCTCCCCTCCAGCAGG
AACCTTCTTGGTGAATGTGACCAAGTCATAATTGAGAGACCCAACGATAGTGATGCGCGACATGT
TGGTTTCTTTAGGTTCTTTCGCAAGATATATTCCGAAGTTGAAGTATATGCAGTTCCCCCACATC
TCAGAATCTGGGGCGGTAAAATTATGATATATTGAAAATTATACAGAAACGTCGCTATCTTCAGA
ATCAGACGTTTCAGACTCTTTCGTTTTGTTTACGGACTTGATGGCTTCACCGATGGCTTCATCAG
TCTCGTTCTCCTCACCTTCGTCGTCTTCTTCGTCAGTGTCGTCAT
Right flanking sequence: Indices 20755 -- 21254
TTCGCTCTCTTCCTCCTCTGAGCTTCCGAAAAACTCGTCAAGTGACTGTAACCTGTACCCATTGG
TTTCCAGGCTTGAAGTCTTGACGGGGATCTCTTGGTTTAAAAGAGTCTTCCGGCGAATGGCTTCC
GCAGCGGATATACCTCCACCAAAGCCAGTTAGAGGGGGCGACAGTGATCGTGAACGTTTCAGCAT
AGGTTCCAGCTTCAAATGAGAGCTCAACGTGTTGGATATAACCTCGGTTTCCGTTCTAATCTCAG
CTGGTGGAAGCAGTTCGGGGTCTGCCCATTCTGGCACCGCCAGCATGAACAGGTCTCGGGGCTCA
GCAGCCATAGGCACCAGTTTCGGAACCTGTAAGAAAAGTGAGGCAAGCTTCAGTTGTTTCGTACC
CTTCAAGAGCACATTGAGCATGCGAGCACGATCACGGGTGTCATAGCTAGAATCGTACTTGGCCA
AGTGAAGTACGTGGTTGAACATCTTGTGAATACGCAGCTGTTCAA
Found at i:20759 original size:12 final size:12
Alignment explanation
Indices: 20738--20773 Score: 56
Period size: 12 Copynumber: 3.1 Consensus size: 12
20728 CTCTTCACTT
20738 TCTTCCTCGCTC
1 TCTTCCTCGCTC
*
20750 TCTTCTTCGCTC
1 TCTTCCTCGCTC
20762 TCTTCCTC-CTC
1 TCTTCCTCGCTC
20773 T
1 T
20774 GAGCTTCCGA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
11 4 0.18
12 18 0.82
ACGTcount: A:0.00, C:0.47, G:0.06, T:0.47
Consensus pattern (12 bp):
TCTTCCTCGCTC
Left flanking sequence: Indices 20238 -- 20737
CCAATGCTTGCTTCAATTGGGTGCCAAACAGGTCGTTCCCGACATTGCCAACCATCCGGACTTTG
GTCTCCGAACAGGCGTTGAGTCGGGCAGTGGCCAAAGCCTCATTGAGACCCTTGCCGCCCAAATG
GTTTTCGAAAGCGTCCGCTTGGTACGTCTCCCCTCCAGCAGGAACCTTCTTGGTGAATGTGACCA
AGTCATAATTGAGAGACCCAACGATAGTGATGCGCGACATGTTGGTTTCTTTAGGTTCTTTCGCA
AGATATATTCCGAAGTTGAAGTATATGCAGTTCCCCCACATCTCAGAATCTGGGGCGGTAAAATT
ATGATATATTGAAAATTATACAGAAACGTCGCTATCTTCAGAATCAGACGTTTCAGACTCTTTCG
TTTTGTTTACGGACTTGATGGCTTCACCGATGGCTTCATCAGTCTCGTTCTCCTCACCTTCGTCG
TCTTCTTCGTCAGTGTCGTCATTTTCTTCCTCGGCCTCTTCACTT
Right flanking sequence: Indices 20774 -- 21273
GAGCTTCCGAAAAACTCGTCAAGTGACTGTAACCTGTACCCATTGGTTTCCAGGCTTGAAGTCTT
GACGGGGATCTCTTGGTTTAAAAGAGTCTTCCGGCGAATGGCTTCCGCAGCGGATATACCTCCAC
CAAAGCCAGTTAGAGGGGGCGACAGTGATCGTGAACGTTTCAGCATAGGTTCCAGCTTCAAATGA
GAGCTCAACGTGTTGGATATAACCTCGGTTTCCGTTCTAATCTCAGCTGGTGGAAGCAGTTCGGG
GTCTGCCCATTCTGGCACCGCCAGCATGAACAGGTCTCGGGGCTCAGCAGCCATAGGCACCAGTT
TCGGAACCTGTAAGAAAAGTGAGGCAAGCTTCAGTTGTTTCGTACCCTTCAAGAGCACATTGAGC
ATGCGAGCACGATCACGGGTGTCATAGCTAGAATCGTACTTGGCCAAGTGAAGTACGTGGTTGAA
CATCTTGTGAATACGCAGCTGTTCAACAACGTCCGGAAGCTGGTC
Found at i:20765 original size:24 final size:23
Alignment explanation
Indices: 20729--20773 Score: 63
Period size: 24 Copynumber: 1.9 Consensus size: 23
20719 TTCCTCGGCC
*
20729 TCTTCACTTTCTTCCTCGCTCTCT
1 TCTTCACTCTCTTCCTC-CTCTCT
*
20753 TCTTCGCTCTCTTCCTCCTCT
1 TCTTCACTCTCTTCCTCCTCT
20774 GAGCTTCCGA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 4 0.21
24 15 0.79
ACGTcount: A:0.02, C:0.44, G:0.04, T:0.49
Consensus pattern (23 bp):
TCTTCACTCTCTTCCTCCTCTCT
Left flanking sequence: Indices 20229 -- 20728
TAGCATCCACCAATGCTTGCTTCAATTGGGTGCCAAACAGGTCGTTCCCGACATTGCCAACCATC
CGGACTTTGGTCTCCGAACAGGCGTTGAGTCGGGCAGTGGCCAAAGCCTCATTGAGACCCTTGCC
GCCCAAATGGTTTTCGAAAGCGTCCGCTTGGTACGTCTCCCCTCCAGCAGGAACCTTCTTGGTGA
ATGTGACCAAGTCATAATTGAGAGACCCAACGATAGTGATGCGCGACATGTTGGTTTCTTTAGGT
TCTTTCGCAAGATATATTCCGAAGTTGAAGTATATGCAGTTCCCCCACATCTCAGAATCTGGGGC
GGTAAAATTATGATATATTGAAAATTATACAGAAACGTCGCTATCTTCAGAATCAGACGTTTCAG
ACTCTTTCGTTTTGTTTACGGACTTGATGGCTTCACCGATGGCTTCATCAGTCTCGTTCTCCTCA
CCTTCGTCGTCTTCTTCGTCAGTGTCGTCATTTTCTTCCTCGGCC
Right flanking sequence: Indices 20774 -- 21273
GAGCTTCCGAAAAACTCGTCAAGTGACTGTAACCTGTACCCATTGGTTTCCAGGCTTGAAGTCTT
GACGGGGATCTCTTGGTTTAAAAGAGTCTTCCGGCGAATGGCTTCCGCAGCGGATATACCTCCAC
CAAAGCCAGTTAGAGGGGGCGACAGTGATCGTGAACGTTTCAGCATAGGTTCCAGCTTCAAATGA
GAGCTCAACGTGTTGGATATAACCTCGGTTTCCGTTCTAATCTCAGCTGGTGGAAGCAGTTCGGG
GTCTGCCCATTCTGGCACCGCCAGCATGAACAGGTCTCGGGGCTCAGCAGCCATAGGCACCAGTT
TCGGAACCTGTAAGAAAAGTGAGGCAAGCTTCAGTTGTTTCGTACCCTTCAAGAGCACATTGAGC
ATGCGAGCACGATCACGGGTGTCATAGCTAGAATCGTACTTGGCCAAGTGAAGTACGTGGTTGAA
CATCTTGTGAATACGCAGCTGTTCAACAACGTCCGGAAGCTGGTC
Found at i:29380 original size:9 final size:9
Alignment explanation
Indices: 29363--29405 Score: 68
Period size: 9 Copynumber: 4.8 Consensus size: 9
29353 GTCTGTTGAC
*
29363 GCTGCTGCT
1 GCTGTTGCT
29372 GCTGTTGCT
1 GCTGTTGCT
*
29381 GTTGTTGCT
1 GCTGTTGCT
29390 GCTGTTGCT
1 GCTGTTGCT
29399 GCTGTTG
1 GCTGTTG
29406 TTGAGCCAAC
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 31 1.00
ACGTcount: A:0.00, C:0.21, G:0.35, T:0.44
Consensus pattern (9 bp):
GCTGTTGCT
Left flanking sequence: Indices 28863 -- 29362
TCGAAGAGCGCATTCGTGTGATGGCCGGTAGGGTTTTCACACCCGCGGGCGTTATGGTTGTCAAG
CGGGTTTTGCAAATGTAGATGCTCTCTTACTGTTGCCTATTATCGTTGTTCAGGAGTTGGGAATA
TCCCATGAGTCTATTATGGGCCGTGCCCTGTGCCTAACATACAAAAAATCGATGGTTCACCGCTT
ACCCCCCATTAACTGTGATAACAATTGCGACGACGTCGACTGGGCACCACCGGTGGGGCTGTTGT
CAAACGTAGGCTGGGGGTAAACTTGGGGAGCCCCTTTACCGCCGGCAAACAAGCCGGGAGGAGGT
GGCGTCAGCGTCTGGGCGCGGTCGTTCATGCGCAACATGTTGACTTGAGGGGGAGGCTGTTTTTG
CGCCTGCTGTTGTAACTGCATCAACAACATTTGCTGTTGTTGAGGGTGCATCTTCTGTTGCTCCA
TTTGTAACTGTTGCAACTGCTGCTGCTGCAATGAGGTCTGTTGAC
Right flanking sequence: Indices 29406 -- 29905
TTGAGCCAACAACTGGGTGATCGGGTGGTTGGCGTAGGCCAAATGGTAGTTTTTGATCGGACGGA
ACAAAAAGCGTTCAATCACCACCCGCGCACGCTCAGCATCGTCGCCGGATGCCGTGGGTTTGGAG
CTATCAAACCCAAACATCGGTAATCTTGGAGTGTCCAGTTTGAATGTCACAGGCTCGGCAGTGCC
TTCGTGAAGAGCATGCAATTGATCGGCAGCATGGTCCAAAAAGTGGGCAGCCAGATCGTCGTCGA
TGTCGATGTCGTCCGGCAATAAGACCAGCTCCTTATTTCCACGCTTCGTACGCTGTTTGGGGGCC
TCGCGCTTTTGCTTGTCCTTAAAAATCTCCCCGAGAGTAGGGAAGGCTGCCAGGTTGGCAAGTGT
CAGATTCTCGGGAGCCGGCAGAGACGTGGCCAGCTGGGCGTCGCCTGCAGCCCAGTGTGCCGTCG
CGGGAAGGGCCACCTGGGGAGGAGGCAGCTGAGCCGGCTCCTCGT
Found at i:82885 original size:45 final size:45
Alignment explanation
Indices: 82815--82963 Score: 169
Period size: 45 Copynumber: 3.4 Consensus size: 45
82805 TCTGTCGTTG
* * * * *
82815 CGACCGTAGTTGTCGCGGCCACCACCGTAGCCACCCTGGTTACCA
1 CGACCATAGTCGTCACGGCCACCACCGTAGCCGCCCTGGTTGCCA
*
82860 CGACCATAGTCGTCACGGCCGCCACCGTAGCCGCCCTGGTTGCCA
1 CGACCATAGTCGTCACGGCCACCACCGTAGCCGCCCTGGTTGCCA
* * ** *
82905 CGGCCATAATCGTCAC-G--ACCACCAAAGCCGCCCTGGTTGCCG
1 CGACCATAGTCGTCACGGCCACCACCGTAGCCGCCCTGGTTGCCA
*
82947 CGACCGTAGTCGTCACG
1 CGACCATAGTCGTCACG
82964 TCTGTCATTA
Statistics
Matches: 88, Mismatches: 15, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
42 34 0.39
44 1 0.01
45 53 0.60
ACGTcount: A:0.18, C:0.40, G:0.26, T:0.16
Consensus pattern (45 bp):
CGACCATAGTCGTCACGGCCACCACCGTAGCCGCCCTGGTTGCCA
Left flanking sequence: Indices 82315 -- 82814
ATAGATCTCGCGAGGATGTACCTTAGGAGCGTTTTCAGCGGGTTGAATAACTTTAAACAACTTGG
TTTCAACTTCCACGAGGCTTGTGGCCGGGCGGGGCACCAGCACCTCTTGCTTGGGATGAACCGCC
ATAGCAATTGAGGGGCCCTTGCGAGGAGCAACAACAGAGTCATTCAAACCAATTCTGATCATGAC
TAGTAGAAGATGCGAAAACCATTCGCATGGTTTAGCTAGTTATGTGTGTTCCCCTCCTTGTGGTT
GACCACAATCAATTTGCAGCCAAAATTCGCAGCCACTTTACATGCCGGAATGAAACAAGCTGTTG
CACAATACCACCGTAGACACAAACCTAGGTTCGCAAATCTCCGTAAATGAAACATGATTGATTGA
TCGGGAAATAAAGCTTGACAGCTCTATGCCCCGATATTTGGGATCTTTTTTCACGCAGTTATATG
TATAATTCGTTTCATTTCATTTCATATACTTAGTATCTGTCGTTG
Right flanking sequence: Indices 82964 -- 83463
TCTGTCATTACCATAGCCACCACTGTTGTAGTTGTCACGTCTGTCACCGCCGTGGTGACGGCCCT
CGTCACGACCGCCAAAGCCACCGTGGTCACCACGGCCGTAGTCGTCGCGTCTGTCGTCGCGTCTG
TCGCCGTAGCCACCGTGGCCACCTTGGCCACCCTGGCCGTACTTGTGCTCGTCTCTGCGGTCTTC
CCACGCGTCCTCAACCTTGTTAGCGGCAATGGCACCGCCAATGGCACCGACGATTTTGCCGAGAG
TACCGTGGCTCTGGCCACCGACCTTGTCACCGGCATAACCGCCGGCCAAGCCACCGCCAACGGTG
GCTAAGAAACCACGCTCACCGTCCTGCTGCTGGCCACCCTGCTGGTTGGACTGTCTCGGGTTATA
TTCACCTTGGTCACCGGAGGAGTAAAATTCGTTAGCAGACATAATTGAGCAGAAATCAAATAACT
TTCACAACGTGTTATTTTTGCAATTTATACCCGTGGTGGCGACGA
Found at i:83086 original size:12 final size:12
Alignment explanation
Indices: 83069--83096 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
83059 CACGGCCGTA
83069 GTCGTCGCGTCT
1 GTCGTCGCGTCT
83081 GTCGTCGCGTCT
1 GTCGTCGCGTCT
83093 GTCG
1 GTCG
83097 CCGTAGCCAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.00, C:0.32, G:0.36, T:0.32
Consensus pattern (12 bp):
GTCGTCGCGTCT
Left flanking sequence: Indices 82569 -- 83068
GTGGTTGACCACAATCAATTTGCAGCCAAAATTCGCAGCCACTTTACATGCCGGAATGAAACAAG
CTGTTGCACAATACCACCGTAGACACAAACCTAGGTTCGCAAATCTCCGTAAATGAAACATGATT
GATTGATCGGGAAATAAAGCTTGACAGCTCTATGCCCCGATATTTGGGATCTTTTTTCACGCAGT
TATATGTATAATTCGTTTCATTTCATTTCATATACTTAGTATCTGTCGTTGCGACCGTAGTTGTC
GCGGCCACCACCGTAGCCACCCTGGTTACCACGACCATAGTCGTCACGGCCGCCACCGTAGCCGC
CCTGGTTGCCACGGCCATAATCGTCACGACCACCAAAGCCGCCCTGGTTGCCGCGACCGTAGTCG
TCACGTCTGTCATTACCATAGCCACCACTGTTGTAGTTGTCACGTCTGTCACCGCCGTGGTGACG
GCCCTCGTCACGACCGCCAAAGCCACCGTGGTCACCACGGCCGTA
Right flanking sequence: Indices 83097 -- 83596
CCGTAGCCACCGTGGCCACCTTGGCCACCCTGGCCGTACTTGTGCTCGTCTCTGCGGTCTTCCCA
CGCGTCCTCAACCTTGTTAGCGGCAATGGCACCGCCAATGGCACCGACGATTTTGCCGAGAGTAC
CGTGGCTCTGGCCACCGACCTTGTCACCGGCATAACCGCCGGCCAAGCCACCGCCAACGGTGGCT
AAGAAACCACGCTCACCGTCCTGCTGCTGGCCACCCTGCTGGTTGGACTGTCTCGGGTTATATTC
ACCTTGGTCACCGGAGGAGTAAAATTCGTTAGCAGACATAATTGAGCAGAAATCAAATAACTTTC
ACAACGTGTTATTTTTGCAATTTATACCCGTGGTGGCGACGACCCCTGTCCCTTACGCGCAATTA
CGTCACTGAAAAGAATGCTTGGAATGTAAGTACGATGAAAATGCGTTAGTATTTCGACGAATCAT
GCATGGTTTTTCTTGGCACCGATGGTCTGGGGCATTTTACGGGCA
Found at i:99002 original size:27 final size:27
Alignment explanation
Indices: 98971--99038 Score: 73
Period size: 27 Copynumber: 2.5 Consensus size: 27
98961 TGCTATTTTA
* *
98971 ATGTATCTTCGCTTACGTGTTATTCTG
1 ATGTATCTTCGCTTACATATTATTCTG
* * *
98998 ATGTATCTTTGCTTTCATATTATTTTG
1 ATGTATCTTCGCTTACATATTATTCTG
* *
99025 ATATACCTTCGCTT
1 ATGTATCTTCGCTT
99039 TGGTGCTAGA
Statistics
Matches: 33, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
27 33 1.00
ACGTcount: A:0.18, C:0.18, G:0.13, T:0.51
Consensus pattern (27 bp):
ATGTATCTTCGCTTACATATTATTCTG
Left flanking sequence: Indices 98471 -- 98970
TGTTGTTGACGTCGCCGTTGACGGTGACCGTCGGGCTCCTGATGACGATACCCCTTGCCATGGTT
GGTGACTGGATCATCAAGGGGTTTGCCATCAACTGGTGGTATCTCGGCGGCGCCCTGGTGGTGAC
GGCCGGGTTTCTTATTATTAACCGCGACGAGGAGGCTGACTTCGTCGAGTAGCATATGGGTTATA
GACATACATTGGATGAGTAGGATGAGTCGCCTTGGTGGTGTGCGATCACGTTTAGTGTTATTGTG
GTGTATAAACGTGTACGATCAAGAAGCTTTAGTGCTTGAATCTCTACGTGTGCCATCAAGTCGGT
GTAGTGTTATTGTGGTGGATACGCGTGTAAGATCAAGTGCTAGTGCTACTCTGTTACATCTGTGC
GTGTACGGTCGGGGAGCTTAGTGCTTTTCCGATACATCACTGCGTGTACCGTCGATTCGCTTTGG
AGATATTCTGATGTATTTCCATCAAGTCACTTTAGTGCTATTTTA
Right flanking sequence: Indices 99039 -- 99538
TGGTGCTAGATGTATCTTCGCTTTAGCGTTATTCGCATCACTTCCTCTACCATACAGGCAATATC
TTCTCCCCTCAACATATGTACGCAAGATACTCTAACCCTTCTGTACACAACCCGCTTCGAGTACC
ATTGCCAGTACCGTTTCCCATGCCAGAATACCACTATTATATACCCTTCTACTTCCCTTCTACTT
CCCTTTATTTCCCTTCTACCTTCATCCCTCGCACTCACATCGTCTAACCGTCAACCCTACCAAAC
ATACCAAACCATCCTACATAAACCCTATTTCGGAAACTCACCCAAACACCACCAATTGCAACTAC
TCAATTGCACCCCAAACCGTAAACTCCACACCACAACCAACCTCCATCCCCCCTTCCCCCTGCTT
GCTCTTGCTCGTCCCAGCCGCACTGTGCTCAATTTTTCTTTGTTTTCGCACATCCCATTCGAGAT
CATCAACATGTTCAACCAGCTGCTGAGTGGCTTTGGCGGGTTTGG
Found at i:99246 original size:21 final size:22
Alignment explanation
Indices: 99212--99252 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
99202 CTATTATATA
99212 CCCTTCTACTTCCCTTCTACTT
1 CCCTTCTACTTCCCTTCTACTT
*
99234 CCCTT-TATTTCCCTTCTAC
1 CCCTTCTACTTCCCTTCTAC
99253 CTTCATCCCT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 13 0.72
22 5 0.28
ACGTcount: A:0.10, C:0.44, G:0.00, T:0.46
Consensus pattern (22 bp):
CCCTTCTACTTCCCTTCTACTT
Left flanking sequence: Indices 98712 -- 99211
CACGTTTAGTGTTATTGTGGTGTATAAACGTGTACGATCAAGAAGCTTTAGTGCTTGAATCTCTA
CGTGTGCCATCAAGTCGGTGTAGTGTTATTGTGGTGGATACGCGTGTAAGATCAAGTGCTAGTGC
TACTCTGTTACATCTGTGCGTGTACGGTCGGGGAGCTTAGTGCTTTTCCGATACATCACTGCGTG
TACCGTCGATTCGCTTTGGAGATATTCTGATGTATTTCCATCAAGTCACTTTAGTGCTATTTTAA
TGTATCTTCGCTTACGTGTTATTCTGATGTATCTTTGCTTTCATATTATTTTGATATACCTTCGC
TTTGGTGCTAGATGTATCTTCGCTTTAGCGTTATTCGCATCACTTCCTCTACCATACAGGCAATA
TCTTCTCCCCTCAACATATGTACGCAAGATACTCTAACCCTTCTGTACACAACCCGCTTCGAGTA
CCATTGCCAGTACCGTTTCCCATGCCAGAATACCACTATTATATA
Right flanking sequence: Indices 99253 -- 99752
CTTCATCCCTCGCACTCACATCGTCTAACCGTCAACCCTACCAAACATACCAAACCATCCTACAT
AAACCCTATTTCGGAAACTCACCCAAACACCACCAATTGCAACTACTCAATTGCACCCCAAACCG
TAAACTCCACACCACAACCAACCTCCATCCCCCCTTCCCCCTGCTTGCTCTTGCTCGTCCCAGCC
GCACTGTGCTCAATTTTTCTTTGTTTTCGCACATCCCATTCGAGATCATCAACATGTTCAACCAG
CTGCTGAGTGGCTTTGGCGGGTTTGGCCAGAGCAATGCCGGTTCGGGCAGTCCGTTTGGCGCGGC
ACTGAACACAAACAACACCAGCCCGTTCGGTGGAGGCAACACCGGCGGCTCGGGGTTGTTTGGCG
CCAGCAACACCCTGACGTTTGGCAACCCGTCAGCGAGCACAGGGGCGTTTGGCAGCGCTGGGGCC
ACCAACACCAGCCCGTTTGGCGCGGCCAACAACAACACCGCCTCC
Found at i:99247 original size:10 final size:11
Alignment explanation
Indices: 99212--99252 Score: 66
Period size: 11 Copynumber: 3.8 Consensus size: 11
99202 CTATTATATA
99212 CCCTTCTACTT
1 CCCTTCTACTT
99223 CCCTTCTACTT
1 CCCTTCTACTT
*
99234 CCCTT-TATTT
1 CCCTTCTACTT
99244 CCCTTCTAC
1 CCCTTCTAC
99253 CTTCATCCCT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
10 9 0.33
11 18 0.67
ACGTcount: A:0.10, C:0.44, G:0.00, T:0.46
Consensus pattern (11 bp):
CCCTTCTACTT
Left flanking sequence: Indices 98712 -- 99211
CACGTTTAGTGTTATTGTGGTGTATAAACGTGTACGATCAAGAAGCTTTAGTGCTTGAATCTCTA
CGTGTGCCATCAAGTCGGTGTAGTGTTATTGTGGTGGATACGCGTGTAAGATCAAGTGCTAGTGC
TACTCTGTTACATCTGTGCGTGTACGGTCGGGGAGCTTAGTGCTTTTCCGATACATCACTGCGTG
TACCGTCGATTCGCTTTGGAGATATTCTGATGTATTTCCATCAAGTCACTTTAGTGCTATTTTAA
TGTATCTTCGCTTACGTGTTATTCTGATGTATCTTTGCTTTCATATTATTTTGATATACCTTCGC
TTTGGTGCTAGATGTATCTTCGCTTTAGCGTTATTCGCATCACTTCCTCTACCATACAGGCAATA
TCTTCTCCCCTCAACATATGTACGCAAGATACTCTAACCCTTCTGTACACAACCCGCTTCGAGTA
CCATTGCCAGTACCGTTTCCCATGCCAGAATACCACTATTATATA
Right flanking sequence: Indices 99253 -- 99752
CTTCATCCCTCGCACTCACATCGTCTAACCGTCAACCCTACCAAACATACCAAACCATCCTACAT
AAACCCTATTTCGGAAACTCACCCAAACACCACCAATTGCAACTACTCAATTGCACCCCAAACCG
TAAACTCCACACCACAACCAACCTCCATCCCCCCTTCCCCCTGCTTGCTCTTGCTCGTCCCAGCC
GCACTGTGCTCAATTTTTCTTTGTTTTCGCACATCCCATTCGAGATCATCAACATGTTCAACCAG
CTGCTGAGTGGCTTTGGCGGGTTTGGCCAGAGCAATGCCGGTTCGGGCAGTCCGTTTGGCGCGGC
ACTGAACACAAACAACACCAGCCCGTTCGGTGGAGGCAACACCGGCGGCTCGGGGTTGTTTGGCG
CCAGCAACACCCTGACGTTTGGCAACCCGTCAGCGAGCACAGGGGCGTTTGGCAGCGCTGGGGCC
ACCAACACCAGCCCGTTTGGCGCGGCCAACAACAACACCGCCTCC
Found at i:100202 original size:24 final size:24
Alignment explanation
Indices: 100170--100221 Score: 95
Period size: 24 Copynumber: 2.2 Consensus size: 24
100160 CGCGTTTGGC
*
100170 GGCAACACCTCCACCAACGCGTTT
1 GGCAACACCTCCAACAACGCGTTT
100194 GGCAACACCTCCAACAACGCGTTT
1 GGCAACACCTCCAACAACGCGTTT
100218 GGCA
1 GGCA
100222 GCTCCAACTC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.27, C:0.38, G:0.19, T:0.15
Consensus pattern (24 bp):
GGCAACACCTCCAACAACGCGTTT
Left flanking sequence: Indices 99670 -- 100169
CGTCAGCGAGCACAGGGGCGTTTGGCAGCGCTGGGGCCACCAACACCAGCCCGTTTGGCGCGGCC
AACAACAACACCGCCTCCAACACCGGGTTTTTCGGCAACTCCAACGCAGGAACCGCCACCAGCCC
GTTTGGCGGCGCCAGCACGTTTGGAGCGGGCGCAGCCACCACCAACCAGGGCACCGCCGTGAAAC
CGTTTGCTCCGTTTGTGGAGAAGGAGGCCAACAACACCAGCACCACCTTTGAAAACATCTGTGCC
ATGCCCGAGTACAAAAACTTTTCGTTTGAGGAGTTGCGGTGCAAGGACTACGAGCAGGGCCGGCG
CTACGGCACGGGCAACACCGGTGGCTTTGGCGGGCTGAGCGGGTTTGGCGTCTCCACCACCTCGC
TGGGCTTCGGAGGGTCCAACGCCTTTGGCAGCACCACGGGCACCCTGGGGTTTGGCCAGCAGTCC
AACACCCTCAACAAGCCGTTTGGCCAGACGGGCAGCGCGTTTGGC
Right flanking sequence: Indices 100222 -- 100721
GCTCCAACTCGACGTTTGGCCAGAACAACAACCAGCCGTCCTCCGGGTTTGGCGGGTCGCTGGGG
GGCTTTGGCGCCTCCACCAACACCAACGCGTCGTCGGGCGGGTTTGGCAGTGCGTTTGGTGCCAG
CAAGCCCGCGTTTGGCGCCAGCTCGAGCGGGTTTGGCGCCTCCAACACCTCTGGGTTTGGCAGCG
GCAACAACGCGCTAGGCGGCAGCTCGGGCTTTGGCAACACCGCCAACAACGCGTTTGGCAGCACC
AACAGCGGCTCGGGCGGGTTGTTTGGCCAGAACAACACCGCGTCGACGGGCGGCGGCATCTTTGG
CAACAACAACACCAGCACGTTTGGCGCCAACAACAACACCCAGACCAACGCGTTTGGCGCCTCCA
ACACCGGGTCCGGCGGGTTTGGCGCGTCGGCGGGCGGGTTCGGCCAGAACTCGCTGAATGCATTT
GGCCAGAACAAGCCGTCGGGCGGGTTGTTTGGCAACAACACCAAC
Found at i:100226 original size:21 final size:22
Alignment explanation
Indices: 100174--100229 Score: 69
Period size: 24 Copynumber: 2.5 Consensus size: 22
100164 TTTGGCGGCA
*
100174 ACACCTCCACCAACGCGTTTGG
1 ACACCTCCAACAACGCGTTTGG
100196 CAACACCTCCAACAACGCGTTTGG
1 --ACACCTCCAACAACGCGTTTGG
*
100220 -CAGCTCCAAC
1 ACACCTCCAAC
100230 TCGACGTTTG
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
21 9 0.30
24 21 0.70
ACGTcount: A:0.27, C:0.41, G:0.16, T:0.16
Consensus pattern (22 bp):
ACACCTCCAACAACGCGTTTGG
Left flanking sequence: Indices 99674 -- 100173
AGCGAGCACAGGGGCGTTTGGCAGCGCTGGGGCCACCAACACCAGCCCGTTTGGCGCGGCCAACA
ACAACACCGCCTCCAACACCGGGTTTTTCGGCAACTCCAACGCAGGAACCGCCACCAGCCCGTTT
GGCGGCGCCAGCACGTTTGGAGCGGGCGCAGCCACCACCAACCAGGGCACCGCCGTGAAACCGTT
TGCTCCGTTTGTGGAGAAGGAGGCCAACAACACCAGCACCACCTTTGAAAACATCTGTGCCATGC
CCGAGTACAAAAACTTTTCGTTTGAGGAGTTGCGGTGCAAGGACTACGAGCAGGGCCGGCGCTAC
GGCACGGGCAACACCGGTGGCTTTGGCGGGCTGAGCGGGTTTGGCGTCTCCACCACCTCGCTGGG
CTTCGGAGGGTCCAACGCCTTTGGCAGCACCACGGGCACCCTGGGGTTTGGCCAGCAGTCCAACA
CCCTCAACAAGCCGTTTGGCCAGACGGGCAGCGCGTTTGGCGGCA
Right flanking sequence: Indices 100230 -- 100729
TCGACGTTTGGCCAGAACAACAACCAGCCGTCCTCCGGGTTTGGCGGGTCGCTGGGGGGCTTTGG
CGCCTCCACCAACACCAACGCGTCGTCGGGCGGGTTTGGCAGTGCGTTTGGTGCCAGCAAGCCCG
CGTTTGGCGCCAGCTCGAGCGGGTTTGGCGCCTCCAACACCTCTGGGTTTGGCAGCGGCAACAAC
GCGCTAGGCGGCAGCTCGGGCTTTGGCAACACCGCCAACAACGCGTTTGGCAGCACCAACAGCGG
CTCGGGCGGGTTGTTTGGCCAGAACAACACCGCGTCGACGGGCGGCGGCATCTTTGGCAACAACA
ACACCAGCACGTTTGGCGCCAACAACAACACCCAGACCAACGCGTTTGGCGCCTCCAACACCGGG
TCCGGCGGGTTTGGCGCGTCGGCGGGCGGGTTCGGCCAGAACTCGCTGAATGCATTTGGCCAGAA
CAAGCCGTCGGGCGGGTTGTTTGGCAACAACACCAACACCAACAC
Found at i:100809 original size:48 final size:45
Alignment explanation
Indices: 100695--100841 Score: 155
Period size: 45 Copynumber: 3.3 Consensus size: 45
100685 CAAGCCGTCG
*
100695 GGCGGGTTGTTTGGCAACAACACCAACA---CCAAC-ACTCTGGGC
1 GGCGGGTTGTTTGGCAACAA-ACCAACACCGCCAACAACACTGGGC
* *
100737 GGCGGGTTGTTTGGTAGC--ACCAACACCGCCAACAACAACCTGGGC
1 GGCGGGTTGTTTGGCAACAAACCAACACCGCCAACAAC-A-CTGGGC
* **
100782 GGCGGGTTGTTTGGCAACAATAACAACACCGCCAACAACAC-GTCC
1 GGCGGGTTGTTTGGCAACAA-ACCAACACCGCCAACAACACTGGGC
100827 GGCGGGTTGTTTGGC
1 GGCGGGTTGTTTGGC
100842 CAGAACAAGC
Statistics
Matches: 88, Mismatches: 8, Indels: 15
0.79 0.07 0.14
Matches are distributed among these distances:
39 7 0.08
42 21 0.24
43 2 0.02
45 39 0.44
46 1 0.01
47 1 0.01
48 17 0.19
ACGTcount: A:0.24, C:0.29, G:0.29, T:0.18
Consensus pattern (45 bp):
GGCGGGTTGTTTGGCAACAAACCAACACCGCCAACAACACTGGGC
Left flanking sequence: Indices 100195 -- 100694
GCAACACCTCCAACAACGCGTTTGGCAGCTCCAACTCGACGTTTGGCCAGAACAACAACCAGCCG
TCCTCCGGGTTTGGCGGGTCGCTGGGGGGCTTTGGCGCCTCCACCAACACCAACGCGTCGTCGGG
CGGGTTTGGCAGTGCGTTTGGTGCCAGCAAGCCCGCGTTTGGCGCCAGCTCGAGCGGGTTTGGCG
CCTCCAACACCTCTGGGTTTGGCAGCGGCAACAACGCGCTAGGCGGCAGCTCGGGCTTTGGCAAC
ACCGCCAACAACGCGTTTGGCAGCACCAACAGCGGCTCGGGCGGGTTGTTTGGCCAGAACAACAC
CGCGTCGACGGGCGGCGGCATCTTTGGCAACAACAACACCAGCACGTTTGGCGCCAACAACAACA
CCCAGACCAACGCGTTTGGCGCCTCCAACACCGGGTCCGGCGGGTTTGGCGCGTCGGCGGGCGGG
TTCGGCCAGAACTCGCTGAATGCATTTGGCCAGAACAAGCCGTCG
Right flanking sequence: Indices 100842 -- 101341
CAGAACAAGCCTGCGGCGTCGGGCGGGTTGTTTGGCAGCAGCAACACCGCGTCCAACCTGGGCGG
AGGCTTGTTTGGTAACAACAACAACACCAACACCAACACCGGCGGCGGGTTGTTTGGCAACAACA
ACTCCAGCGGCACCAGCGGCGGGCTTTTCGGCGGCAACAACAACAACAACACCGCCAACACCGCG
TCCGGCGGGCTTTTCGGCGCCAAGCCGGCGGCGCCGTCGGGCGGCGGGCTTTTCGGCTCCAACAA
CAACACCACCGCCTCCACCGGCGGCGGGTTGTTTGGCAGCAACAACACCAACACCGCCACCAACA
CCGGCGGCGGCCTCTTTGGCGCCAAACCGGCGGCGCTGGGCGGGTTGTTTGGCGGCCAGCAGCAG
CAGCAGCAACCGGCGGCCGCCAACACCGCGGCCCTCAACCAGCAGGGCCAGCAGGCGTTGGTCAA
CATCAACCTGGCCAACCCCTACGGGTCCAACCCGTTGTTTGTGCT
Found at i:100924 original size:123 final size:125
Alignment explanation
Indices: 100737--100964 Score: 309
Period size: 123 Copynumber: 1.8 Consensus size: 125
100727 CACTCTGGGC
* * *
100737 GGCGGGTTGTTTGGTAGCACCAACACCGCCAACAACAACCTGGGCGGCGGGTTGTTTGGCAACAA
1 GGCGGGTTGTTTGGCAGCACCAACACCGCCAAC-ACAACCTGGGCGGAGGCTTGTTTGGCAACAA
* **
100802 TAACAACACCGCCAACAACA-CGTCCGGCGGGTTGTTTGGCCAGAACAAGCCTGCGGCGTCG
65 CAACAACACCAACAACAACACCG-CCGGCGGGTTGTTTGGCCAGAACAAGCCTGCGGCGTCG
* ** *
100863 GGCGGGTTGTTTGGCAGCAGCAACACCG-CGTC-CAACCTGGGCGGAGGCTTGTTTGGTAACAAC
1 GGCGGGTTGTTTGGCAGCACCAACACCGCCAACACAACCTGGGCGGAGGCTTGTTTGGCAACAAC
* *
100926 AACAACACCAACACCAACACCGGCGGCGGGTTGTTTGGC
66 AACAACACCAACAACAACACCGCCGGCGGGTTGTTTGGC
100965 AACAACAACT
Statistics
Matches: 89, Mismatches: 12, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
123 59 0.66
124 2 0.02
125 2 0.02
126 26 0.29
ACGTcount: A:0.23, C:0.29, G:0.31, T:0.17
Consensus pattern (125 bp):
GGCGGGTTGTTTGGCAGCACCAACACCGCCAACACAACCTGGGCGGAGGCTTGTTTGGCAACAAC
AACAACACCAACAACAACACCGCCGGCGGGTTGTTTGGCCAGAACAAGCCTGCGGCGTCG
Left flanking sequence: Indices 100237 -- 100736
TTGGCCAGAACAACAACCAGCCGTCCTCCGGGTTTGGCGGGTCGCTGGGGGGCTTTGGCGCCTCC
ACCAACACCAACGCGTCGTCGGGCGGGTTTGGCAGTGCGTTTGGTGCCAGCAAGCCCGCGTTTGG
CGCCAGCTCGAGCGGGTTTGGCGCCTCCAACACCTCTGGGTTTGGCAGCGGCAACAACGCGCTAG
GCGGCAGCTCGGGCTTTGGCAACACCGCCAACAACGCGTTTGGCAGCACCAACAGCGGCTCGGGC
GGGTTGTTTGGCCAGAACAACACCGCGTCGACGGGCGGCGGCATCTTTGGCAACAACAACACCAG
CACGTTTGGCGCCAACAACAACACCCAGACCAACGCGTTTGGCGCCTCCAACACCGGGTCCGGCG
GGTTTGGCGCGTCGGCGGGCGGGTTCGGCCAGAACTCGCTGAATGCATTTGGCCAGAACAAGCCG
TCGGGCGGGTTGTTTGGCAACAACACCAACACCAACACTCTGGGC
Right flanking sequence: Indices 100965 -- 101464
AACAACAACTCCAGCGGCACCAGCGGCGGGCTTTTCGGCGGCAACAACAACAACAACACCGCCAA
CACCGCGTCCGGCGGGCTTTTCGGCGCCAAGCCGGCGGCGCCGTCGGGCGGCGGGCTTTTCGGCT
CCAACAACAACACCACCGCCTCCACCGGCGGCGGGTTGTTTGGCAGCAACAACACCAACACCGCC
ACCAACACCGGCGGCGGCCTCTTTGGCGCCAAACCGGCGGCGCTGGGCGGGTTGTTTGGCGGCCA
GCAGCAGCAGCAGCAACCGGCGGCCGCCAACACCGCGGCCCTCAACCAGCAGGGCCAGCAGGCGT
TGGTCAACATCAACCTGGCCAACCCCTACGGGTCCAACCCGTTGTTTGTGCTGCTCCTGGACGCA
GCGGCCGCGCGCGCCGGCGGACCCAAGGCTTCGTCCACGAAAAAGCCGGTGACGTTGCTGGGCAC
CCGCAAGGTGGTGCCGCTCTTCCGGGCCACCGCGTCGGTGCGGGT
Found at i:101009 original size:123 final size:122
Alignment explanation
Indices: 100772--101010 Score: 261
Period size: 123 Copynumber: 1.9 Consensus size: 122
100762 CCGCCAACAA
* * * **
100772 CAACCTGGGCGGCGGGTTGTTTGGCAACAATAACAACACCGCCAACAACACGTCCGGCGGGTTGT
1 CAACCTGGGCGGAGGCTTGTTTGGCAACAACAACAACACCAACAACAACACGTCCGGCGGGTTGT
* * * ** *
100837 TTGGCCAGAACAAGCCTGCGGCGTCGGGCGGGTTGTTTGGCAGCAGCAACACCGCGTC
66 TTGGCAACAACAAGCCAGCGGCACCGGGCGGGTTGTTCGGCAG-AGCAACACCGCGTC
* * *
100895 CAACCTGGGCGGAGGCTTGTTTGGTAACAACAACAACACCAACACCAACACCG-GCGGCGGGTTG
1 CAACCTGGGCGGAGGCTTGTTTGGCAACAACAACAACACCAACAACAACA-CGTCCGGCGGGTTG
*
100959 TTTGGCAACAACAACTCCAGCGGCACCAGCGGCGGGCTT-TTCGGC-G-GCAACA
65 TTTGGCAACAACAA-GCCAGCGGCACC-G-GGCGGG-TTGTTCGGCAGAGCAACA
101011 ACAACAACAA
Statistics
Matches: 96, Mismatches: 15, Indels: 10
0.79 0.12 0.08
Matches are distributed among these distances:
123 71 0.74
124 10 0.10
125 2 0.02
126 11 0.11
127 2 0.02
ACGTcount: A:0.23, C:0.30, G:0.31, T:0.16
Consensus pattern (122 bp):
CAACCTGGGCGGAGGCTTGTTTGGCAACAACAACAACACCAACAACAACACGTCCGGCGGGTTGT
TTGGCAACAACAAGCCAGCGGCACCGGGCGGGTTGTTCGGCAGAGCAACACCGCGTC
Left flanking sequence: Indices 100272 -- 100771
GGCGGGTCGCTGGGGGGCTTTGGCGCCTCCACCAACACCAACGCGTCGTCGGGCGGGTTTGGCAG
TGCGTTTGGTGCCAGCAAGCCCGCGTTTGGCGCCAGCTCGAGCGGGTTTGGCGCCTCCAACACCT
CTGGGTTTGGCAGCGGCAACAACGCGCTAGGCGGCAGCTCGGGCTTTGGCAACACCGCCAACAAC
GCGTTTGGCAGCACCAACAGCGGCTCGGGCGGGTTGTTTGGCCAGAACAACACCGCGTCGACGGG
CGGCGGCATCTTTGGCAACAACAACACCAGCACGTTTGGCGCCAACAACAACACCCAGACCAACG
CGTTTGGCGCCTCCAACACCGGGTCCGGCGGGTTTGGCGCGTCGGCGGGCGGGTTCGGCCAGAAC
TCGCTGAATGCATTTGGCCAGAACAAGCCGTCGGGCGGGTTGTTTGGCAACAACACCAACACCAA
CACTCTGGGCGGCGGGTTGTTTGGTAGCACCAACACCGCCAACAA
Right flanking sequence: Indices 101011 -- 101510
ACAACAACAACACCGCCAACACCGCGTCCGGCGGGCTTTTCGGCGCCAAGCCGGCGGCGCCGTCG
GGCGGCGGGCTTTTCGGCTCCAACAACAACACCACCGCCTCCACCGGCGGCGGGTTGTTTGGCAG
CAACAACACCAACACCGCCACCAACACCGGCGGCGGCCTCTTTGGCGCCAAACCGGCGGCGCTGG
GCGGGTTGTTTGGCGGCCAGCAGCAGCAGCAGCAACCGGCGGCCGCCAACACCGCGGCCCTCAAC
CAGCAGGGCCAGCAGGCGTTGGTCAACATCAACCTGGCCAACCCCTACGGGTCCAACCCGTTGTT
TGTGCTGCTCCTGGACGCAGCGGCCGCGCGCGCCGGCGGACCCAAGGCTTCGTCCACGAAAAAGC
CGGTGACGTTGCTGGGCACCCGCAAGGTGGTGCCGCTCTTCCGGGCCACCGCGTCGGTGCGGGTG
GCACCTGAGCCCACCGCCAAGCCGCAGGCAGGCGCGCTGGCCACC
Found at i:101100 original size:132 final size:131
Alignment explanation
Indices: 100964--101202 Score: 288
Period size: 135 Copynumber: 1.8 Consensus size: 131
100954 GGTTGTTTGG
* * * *
100964 CAACAACAACTCCA-G-CGGCACCAGCGGCGGGCTT-TTCGGCGGCAACAACAACAACAACACCG
1 CAACAACAACACCACGCCGCCACCAGCGGCGGG-TTGTTCGGCAGCAACAACAACAACAACACCA
* *
101026 CCAACACCGCGTCCGGCGGGCT-TTTCGGCGCCAAGCCGGCGGCGCCGTCGGGCGGCGGGCTTTT
65 CCAACACCG-G--CGGCGGCCTCTTT-GGCGCCAAACCGGCGGCGCCGTCGGGCGGCGGGCTTTT
101090 CGGCTC
126 CGGCTC
* * * * * *
101096 CAACAACAACACCACCGCCTCCACCGGCGGCGGGTTGTTTGGCAGCAACAACACCAACACCGCCA
1 CAACAACAACACCA-CGCCGCCACCAGCGGCGGGTTGTTCGGCAGCAACAACAACAACAACACCA
101161 CCAACACCGGCGGCGGCCTCTTTGGCGCCAAACCGGCGGCGC
65 CCAACACCGGCGGCGGCCTCTTTGGCGCCAAACCGGCGGCGC
101203 TGGGCGGGTT
Statistics
Matches: 90, Mismatches: 12, Indels: 10
0.80 0.11 0.09
Matches are distributed among these distances:
132 39 0.43
133 3 0.03
134 4 0.04
135 44 0.49
ACGTcount: A:0.21, C:0.40, G:0.28, T:0.11
Consensus pattern (131 bp):
CAACAACAACACCACGCCGCCACCAGCGGCGGGTTGTTCGGCAGCAACAACAACAACAACACCAC
CAACACCGGCGGCGGCCTCTTTGGCGCCAAACCGGCGGCGCCGTCGGGCGGCGGGCTTTTCGGCT
C
Left flanking sequence: Indices 100464 -- 100963
AACGCGTTTGGCAGCACCAACAGCGGCTCGGGCGGGTTGTTTGGCCAGAACAACACCGCGTCGAC
GGGCGGCGGCATCTTTGGCAACAACAACACCAGCACGTTTGGCGCCAACAACAACACCCAGACCA
ACGCGTTTGGCGCCTCCAACACCGGGTCCGGCGGGTTTGGCGCGTCGGCGGGCGGGTTCGGCCAG
AACTCGCTGAATGCATTTGGCCAGAACAAGCCGTCGGGCGGGTTGTTTGGCAACAACACCAACAC
CAACACTCTGGGCGGCGGGTTGTTTGGTAGCACCAACACCGCCAACAACAACCTGGGCGGCGGGT
TGTTTGGCAACAATAACAACACCGCCAACAACACGTCCGGCGGGTTGTTTGGCCAGAACAAGCCT
GCGGCGTCGGGCGGGTTGTTTGGCAGCAGCAACACCGCGTCCAACCTGGGCGGAGGCTTGTTTGG
TAACAACAACAACACCAACACCAACACCGGCGGCGGGTTGTTTGG
Right flanking sequence: Indices 101203 -- 101702
TGGGCGGGTTGTTTGGCGGCCAGCAGCAGCAGCAGCAACCGGCGGCCGCCAACACCGCGGCCCTC
AACCAGCAGGGCCAGCAGGCGTTGGTCAACATCAACCTGGCCAACCCCTACGGGTCCAACCCGTT
GTTTGTGCTGCTCCTGGACGCAGCGGCCGCGCGCGCCGGCGGACCCAAGGCTTCGTCCACGAAAA
AGCCGGTGACGTTGCTGGGCACCCGCAAGGTGGTGCCGCTCTTCCGGGCCACCGCGTCGGTGCGG
GTGGCACCTGAGCCCACCGCCAAGCCGCAGGCAGGCGCGCTGGCCACCGACGCGGCCATCTTGTC
GCTGGACATCTTCAGCCACAACCGCTTCCGCAAGCTCGTGGTGGAGAAACTGAAGCCCGCGATGG
CGGTGGCGGCCGAGCCCGCCCACCCGAAGCCGGTGCTGTTTGCCACCGAGGCCACGCCCGCGCTC
GAGGCGTCGTCCGCCACCCCGTCGCACACCACCACCCCCAAGCCG
Found at i:103143 original size:6 final size:6
Alignment explanation
Indices: 103134--103232 Score: 76
Period size: 6 Copynumber: 16.5 Consensus size: 6
103124 GCAGCAGCAG
* * * * *
103134 CAGGCC CAGGCC CAGGCC CAGGCC CAGGCC CAGGCG CAAGCG CAAGCG
1 CAGGCC CAGGCC CAGGCC CAGGCC CAGGCC CAGGCC CAGGCC CAGGCC
* * * * *
103182 CAAGCC CAGGCC CA-GCAA CAGGCC CAGGCA CA-ACAA CAGGCC CAGGCC
1 CAGGCC CAGGCC CAGGC-C CAGGCC CAGGCC CAGGC-C CAGGCC CAGGCC
103230 CAG
1 CAG
103233 CAACAGGCCC
Statistics
Matches: 79, Mismatches: 10, Indels: 8
0.81 0.10 0.08
Matches are distributed among these distances:
5 3 0.04
6 73 0.92
7 3 0.04
ACGTcount: A:0.26, C:0.43, G:0.30, T:0.00
Consensus pattern (6 bp):
CAGGCC
Left flanking sequence: Indices 102634 -- 103133
TCGGAGGGTGGTATATTTTCTCGACGGGAGGAGGAGGGAGACCCCGTAGCCACCAGGGGCCCCGC
GGACCCAGCGCCGCCGGACACCGTGTAGACCCGCCATTGTGCAGCCTGGCCACCCGCGCGCACCC
CGTAGCCCGGCTGCCCGCACCACTCGTGCCCGTGCCCGTCGAGCCCGTGCCCGCCGCCCAGCCAT
ATTTTCTCACCTCCAAATCAGCAAAAAAAAATAAACAAAACACCATGAGCTACGAAGGCTACCCA
AAAGAGGACCAGGGCCAACACCCGCAGCGGTTCTACACACTGCCCATGGTGAACATGCAGCCCAG
CTACCAGCAGGGCCAGCAGTACTACCAGCAGAACCAGGGCCAGCTGGTGTACCCGCACCACATGT
ACCAGCAACCCGGCCAGCCGAGCCCGCAACAGGCCCAGCAGCTGCTGCAGTACAACGGCTACTAC
GACCAGCAGCCGAGCCAGCAGCAGTACCTCTACCAGCAGCAGCAG
Right flanking sequence: Indices 103233 -- 103732
CAACAGGCCCAGCAGCAGGCCCAGCAGCAGGTGCAGGCCCAGCTGGCCCTGGCCCAGACCACCAG
CCCCAACGCCACCTACCAGTACCCGCAGTACCAGCTGCAGCAGACCCAGCAGCAGCAGCTGGTGT
ACTACAACCCGCCGCCGCACTTGGCCCACCACTTGCCGCACTTGGCCGGGCAGTACGCGCCAATG
GTGGCCCAGGCCCAGCCACAGCAGCCCCAGGTCAAGTACGAGACGCCCCAGGCCCCGGCGGTGGC
CCAGCCTCCACAGCAGCCGGCAGCCACGCCCGCCCCGCCCGCGGCCGCGGCCCACGTCCCCACCC
AAACACCGACCCCGGTGCAGCAGGCACCGCTGACCCTGCACACCCAGCCGGTGATCTACCTGAAC
ATCCCGCAGCGGTTGCAGCGGATCTTGCCCGCACCGCCGTTGGCCCGGGCACCCACCCGGCCCGA
CGTCAACCTGGGGGTGTCGCAGAAGCGCGCCAAGCGCAAGTCCAA
Found at i:103155 original size:18 final size:18
Alignment explanation
Indices: 103134--103244 Score: 84
Period size: 18 Copynumber: 6.2 Consensus size: 18
103124 GCAGCAGCAG
*
103134 CAGGCCCAGGCCCAGGCC
1 CAGGCCCAGGCACAGGCC
* *
103152 CAGGCCCAGGCCCAGGCG
1 CAGGCCCAGGCACAGGCC
* * * * *
103170 CAAGCGCAAGCGCAAGCC
1 CAGGCCCAGGCACAGGCC
103188 CAGGCCCA-GCAACAGGCC
1 CAGGCCCAGGC-ACAGGCC
* *
103206 CAGGCACA-ACAACAGGCC
1 CAGGCCCAGGC-ACAGGCC
103224 CAGGCCCA-GCAACAGGCC
1 CAGGCCCAGGC-ACAGGCC
103242 CAG
1 CAG
103245 CAGCAGGCCC
Statistics
Matches: 77, Mismatches: 15, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
17 2 0.03
18 75 0.97
ACGTcount: A:0.27, C:0.43, G:0.30, T:0.00
Consensus pattern (18 bp):
CAGGCCCAGGCACAGGCC
Left flanking sequence: Indices 102634 -- 103133
TCGGAGGGTGGTATATTTTCTCGACGGGAGGAGGAGGGAGACCCCGTAGCCACCAGGGGCCCCGC
GGACCCAGCGCCGCCGGACACCGTGTAGACCCGCCATTGTGCAGCCTGGCCACCCGCGCGCACCC
CGTAGCCCGGCTGCCCGCACCACTCGTGCCCGTGCCCGTCGAGCCCGTGCCCGCCGCCCAGCCAT
ATTTTCTCACCTCCAAATCAGCAAAAAAAAATAAACAAAACACCATGAGCTACGAAGGCTACCCA
AAAGAGGACCAGGGCCAACACCCGCAGCGGTTCTACACACTGCCCATGGTGAACATGCAGCCCAG
CTACCAGCAGGGCCAGCAGTACTACCAGCAGAACCAGGGCCAGCTGGTGTACCCGCACCACATGT
ACCAGCAACCCGGCCAGCCGAGCCCGCAACAGGCCCAGCAGCTGCTGCAGTACAACGGCTACTAC
GACCAGCAGCCGAGCCAGCAGCAGTACCTCTACCAGCAGCAGCAG
Right flanking sequence: Indices 103245 -- 103744
CAGCAGGCCCAGCAGCAGGTGCAGGCCCAGCTGGCCCTGGCCCAGACCACCAGCCCCAACGCCAC
CTACCAGTACCCGCAGTACCAGCTGCAGCAGACCCAGCAGCAGCAGCTGGTGTACTACAACCCGC
CGCCGCACTTGGCCCACCACTTGCCGCACTTGGCCGGGCAGTACGCGCCAATGGTGGCCCAGGCC
CAGCCACAGCAGCCCCAGGTCAAGTACGAGACGCCCCAGGCCCCGGCGGTGGCCCAGCCTCCACA
GCAGCCGGCAGCCACGCCCGCCCCGCCCGCGGCCGCGGCCCACGTCCCCACCCAAACACCGACCC
CGGTGCAGCAGGCACCGCTGACCCTGCACACCCAGCCGGTGATCTACCTGAACATCCCGCAGCGG
TTGCAGCGGATCTTGCCCGCACCGCCGTTGGCCCGGGCACCCACCCGGCCCGACGTCAACCTGGG
GGTGTCGCAGAAGCGCGCCAAGCGCAAGTCCAAGTTCTCCAAGCA
Found at i:103239 original size:12 final size:12
Alignment explanation
Indices: 103224--103263 Score: 71
Period size: 12 Copynumber: 3.3 Consensus size: 12
103214 ACAACAGGCC
*
103224 CAGGCCCAGCAA
1 CAGGCCCAGCAG
103236 CAGGCCCAGCAG
1 CAGGCCCAGCAG
103248 CAGGCCCAGCAG
1 CAGGCCCAGCAG
103260 CAGG
1 CAGG
103264 TGCAGGCCCA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 27 1.00
ACGTcount: A:0.28, C:0.40, G:0.33, T:0.00
Consensus pattern (12 bp):
CAGGCCCAGCAG
Left flanking sequence: Indices 102724 -- 103223
TAGACCCGCCATTGTGCAGCCTGGCCACCCGCGCGCACCCCGTAGCCCGGCTGCCCGCACCACTC
GTGCCCGTGCCCGTCGAGCCCGTGCCCGCCGCCCAGCCATATTTTCTCACCTCCAAATCAGCAAA
AAAAAATAAACAAAACACCATGAGCTACGAAGGCTACCCAAAAGAGGACCAGGGCCAACACCCGC
AGCGGTTCTACACACTGCCCATGGTGAACATGCAGCCCAGCTACCAGCAGGGCCAGCAGTACTAC
CAGCAGAACCAGGGCCAGCTGGTGTACCCGCACCACATGTACCAGCAACCCGGCCAGCCGAGCCC
GCAACAGGCCCAGCAGCTGCTGCAGTACAACGGCTACTACGACCAGCAGCCGAGCCAGCAGCAGT
ACCTCTACCAGCAGCAGCAGCAGGCCCAGGCCCAGGCCCAGGCCCAGGCCCAGGCGCAAGCGCAA
GCGCAAGCCCAGGCCCAGCAACAGGCCCAGGCACAACAACAGGCC
Right flanking sequence: Indices 103264 -- 103763
TGCAGGCCCAGCTGGCCCTGGCCCAGACCACCAGCCCCAACGCCACCTACCAGTACCCGCAGTAC
CAGCTGCAGCAGACCCAGCAGCAGCAGCTGGTGTACTACAACCCGCCGCCGCACTTGGCCCACCA
CTTGCCGCACTTGGCCGGGCAGTACGCGCCAATGGTGGCCCAGGCCCAGCCACAGCAGCCCCAGG
TCAAGTACGAGACGCCCCAGGCCCCGGCGGTGGCCCAGCCTCCACAGCAGCCGGCAGCCACGCCC
GCCCCGCCCGCGGCCGCGGCCCACGTCCCCACCCAAACACCGACCCCGGTGCAGCAGGCACCGCT
GACCCTGCACACCCAGCCGGTGATCTACCTGAACATCCCGCAGCGGTTGCAGCGGATCTTGCCCG
CACCGCCGTTGGCCCGGGCACCCACCCGGCCCGACGTCAACCTGGGGGTGTCGCAGAAGCGCGCC
AAGCGCAAGTCCAAGTTCTCCAAGCACCAGGACGACTTGATCGTG
Found at i:104311 original size:24 final size:24
Alignment explanation
Indices: 104284--104361 Score: 76
Period size: 24 Copynumber: 3.4 Consensus size: 24
104274 CTTCCCCAGT
104284 ACCAGCAGCAGCCGATGCAGCACC
1 ACCAGCAGCAGCCGATGCAGCACC
*
104308 ACCAGC--C-GCCGCA-GCAGCCCC
1 ACCAGCAGCAGCCG-ATGCAGCACC
* *
104329 ACCAGCAGCAGCAGATGC-CCTACC
1 ACCAGCAGCAGCCGATGCAGC-ACC
104353 ACCAGCAGC
1 ACCAGCAGC
104362 GCGCGGGGAT
Statistics
Matches: 44, Mismatches: 4, Indels: 12
0.73 0.07 0.20
Matches are distributed among these distances:
21 17 0.39
22 2 0.05
23 3 0.07
24 22 0.50
ACGTcount: A:0.27, C:0.46, G:0.23, T:0.04
Consensus pattern (24 bp):
ACCAGCAGCAGCCGATGCAGCACC
Left flanking sequence: Indices 103784 -- 104283
GCTGTGGGTGGAGATCGCGGAGATCTCGGGGGTGGGGCTGTACCTCGCGGCCCGCAACCGCTACC
AGGTGATTGTCGGCCAGCAGGGCAACAACAACCTGAGCCTGTGGAACGCGCAGGACAAGGTCAAC
TTGCAGAACCTCGTGGACGCCGGCGAGCTCGAAAAGTGGCGGTTCATCCTGTTGGAGCTCAACAA
GGCCACCAACAAGAACTTCAGCGACGTCGAGTGCCGCGAGCTCGTGCGGGTGATGTTCTGGCAGA
ACCCGCTGCTGTTCACCATCAACGAGGACACCATCCTCGAGTGCGAAAAGGAAAAGAAGATCACC
GAGAAGGCGATGGAGCACGCGCAGCAGAAGAAGAAGACCGACGGCGGCGACGTCAAGGAGGAGGC
CAAGGACGAGCAGCGGGGCGCGCCGGCGCCGGCCCCGCCCGCTCCGGTGGCCCCACAGACGATGC
AGCAGCAGCCGCCGCTCCAGCAGCAGCCGCTGTATCTTCCCCAGT
Right flanking sequence: Indices 104362 -- 104861
GCGCGGGGATCCCGCCGCAGCAGATGCCGTACTACAACAAGCCCTACTAATAGACCCGATGTATA
ACTATGTATTAATTAATCAGTAATAGGAGGGTGGGGGTAGAGGTGGTAGCCGGGCTGGTGGTACA
TACTAATGATAATGCTATGAACAATGAATGCTCCAACAGTGACACTATGAACACGGAATGCTGTG
GTGAATATGATGGATACTATATCGAATATAATGTTGATACACCACGGTACCAGCTGGGGGGCCGC
AGGCGGCGCCCCCCAGACCCCCCACCGCTTTCTTGGTGGGGTGTGATACTATTTTGTTTGTATTG
CTTTGGTGATTTCAATTTTGGAGTCTATTTTGGAGTCTATTGTGGAATCTATTTTGGAGTCTATT
TTGGCATCTTTTGGATTCTATATTGGAGTCTTCTGTAGTCTTTTGGAGTCGGTACCAGCTGGGGG
GCCGCAGGCGGCGCCCCCCAGACCCCCCACCGCTTTCTTGGTGGG
Found at i:104348 original size:21 final size:21
Alignment explanation
Indices: 104284--104361 Score: 68
Period size: 21 Copynumber: 3.6 Consensus size: 21
104274 CTTCCCCAGT
*
104284 ACCAGCAGCAGCCGATGCAGCACC
1 ACCAGCAGCAGCAGATGC--C-CC
* *
104308 ACCAGCCGCCGCAGCA-GCCCC
1 ACCAGCAGCAGCAG-ATGCCCC
*
104329 ACCAGCAGCAGCAGATGCCCT
1 ACCAGCAGCAGCAGATGCCCC
*
104350 ACCACCAGCAGC
1 ACCAGCAGCAGC
104362 GCGCGGGGAT
Statistics
Matches: 45, Mismatches: 7, Indels: 7
0.76 0.12 0.12
Matches are distributed among these distances:
20 1 0.02
21 29 0.64
22 1 0.02
24 13 0.29
25 1 0.02
ACGTcount: A:0.27, C:0.46, G:0.23, T:0.04
Consensus pattern (21 bp):
ACCAGCAGCAGCAGATGCCCC
Left flanking sequence: Indices 103784 -- 104283
GCTGTGGGTGGAGATCGCGGAGATCTCGGGGGTGGGGCTGTACCTCGCGGCCCGCAACCGCTACC
AGGTGATTGTCGGCCAGCAGGGCAACAACAACCTGAGCCTGTGGAACGCGCAGGACAAGGTCAAC
TTGCAGAACCTCGTGGACGCCGGCGAGCTCGAAAAGTGGCGGTTCATCCTGTTGGAGCTCAACAA
GGCCACCAACAAGAACTTCAGCGACGTCGAGTGCCGCGAGCTCGTGCGGGTGATGTTCTGGCAGA
ACCCGCTGCTGTTCACCATCAACGAGGACACCATCCTCGAGTGCGAAAAGGAAAAGAAGATCACC
GAGAAGGCGATGGAGCACGCGCAGCAGAAGAAGAAGACCGACGGCGGCGACGTCAAGGAGGAGGC
CAAGGACGAGCAGCGGGGCGCGCCGGCGCCGGCCCCGCCCGCTCCGGTGGCCCCACAGACGATGC
AGCAGCAGCCGCCGCTCCAGCAGCAGCCGCTGTATCTTCCCCAGT
Right flanking sequence: Indices 104362 -- 104861
GCGCGGGGATCCCGCCGCAGCAGATGCCGTACTACAACAAGCCCTACTAATAGACCCGATGTATA
ACTATGTATTAATTAATCAGTAATAGGAGGGTGGGGGTAGAGGTGGTAGCCGGGCTGGTGGTACA
TACTAATGATAATGCTATGAACAATGAATGCTCCAACAGTGACACTATGAACACGGAATGCTGTG
GTGAATATGATGGATACTATATCGAATATAATGTTGATACACCACGGTACCAGCTGGGGGGCCGC
AGGCGGCGCCCCCCAGACCCCCCACCGCTTTCTTGGTGGGGTGTGATACTATTTTGTTTGTATTG
CTTTGGTGATTTCAATTTTGGAGTCTATTTTGGAGTCTATTGTGGAATCTATTTTGGAGTCTATT
TTGGCATCTTTTGGATTCTATATTGGAGTCTTCTGTAGTCTTTTGGAGTCGGTACCAGCTGGGGG
GCCGCAGGCGGCGCCCCCCAGACCCCCCACCGCTTTCTTGGTGGG
Found at i:104718 original size:12 final size:12
Alignment explanation
Indices: 104701--104782 Score: 98
Period size: 12 Copynumber: 7.0 Consensus size: 12
104691 GGTGATTTCA
104701 ATTTTGGAGTCT
1 ATTTTGGAGTCT
104713 ATTTTGGAGTCT
1 ATTTTGGAGTCT
* *
104725 ATTGTGGAATCT
1 ATTTTGGAGTCT
104737 ATTTTGGAGTCT
1 ATTTTGGAGTCT
104749 ATTTTGGCA-TC-
1 ATTTTGG-AGTCT
*
104760 -TTTTGGATTCT
1 ATTTTGGAGTCT
*
104771 ATATTGGAGTCT
1 ATTTTGGAGTCT
104783 TCTGTAGTCT
Statistics
Matches: 60, Mismatches: 6, Indels: 8
0.81 0.08 0.11
Matches are distributed among these distances:
9 1 0.02
10 8 0.13
12 50 0.83
13 1 0.02
ACGTcount: A:0.18, C:0.10, G:0.23, T:0.49
Consensus pattern (12 bp):
ATTTTGGAGTCT
Left flanking sequence: Indices 104201 -- 104700
GCCGGCCCCGCCCGCTCCGGTGGCCCCACAGACGATGCAGCAGCAGCCGCCGCTCCAGCAGCAGC
CGCTGTATCTTCCCCAGTACCAGCAGCAGCCGATGCAGCACCACCAGCCGCCGCAGCAGCCCCAC
CAGCAGCAGCAGATGCCCTACCACCAGCAGCGCGCGGGGATCCCGCCGCAGCAGATGCCGTACTA
CAACAAGCCCTACTAATAGACCCGATGTATAACTATGTATTAATTAATCAGTAATAGGAGGGTGG
GGGTAGAGGTGGTAGCCGGGCTGGTGGTACATACTAATGATAATGCTATGAACAATGAATGCTCC
AACAGTGACACTATGAACACGGAATGCTGTGGTGAATATGATGGATACTATATCGAATATAATGT
TGATACACCACGGTACCAGCTGGGGGGCCGCAGGCGGCGCCCCCCAGACCCCCCACCGCTTTCTT
GGTGGGGTGTGATACTATTTTGTTTGTATTGCTTTGGTGATTTCA
Right flanking sequence: Indices 104783 -- 105282
TCTGTAGTCTTTTGGAGTCGGTACCAGCTGGGGGGCCGCAGGCGGCGCCCCCCAGACCCCCCACC
GCTTTCTTGGTGGGTTGTGATACTATTACTTTTGTATTATTTTGATGAGTTCTATTTTGGAGTGT
TTTGAAGTCTATTTTGAAGTCTGTTGAAGTCTATTTTGGAGTCTATTTTGGAAACTATTTTTGAG
AATTGGAGTCTTTCGGAGTATAGTGCAGTCTTTTGGAATCTATTGTGGAGCCTATTATGGTGTCT
TTCGAAGTCTATTTTGAAGTCTATTTTCGTGCGTACTATTATGTTAATTTCTGTTCTGAAAAATA
CGTATTTGTAATTGTATTTGATAATACTGTAAATATTATGAACGCTACGGACCGTTGTCGTATAA
CCACATATTCCACTTGCATGTATGCTTTCTGGATAGACGCTTGGTAGACGCCTTTCGACACCTCT
TTTCGGACACTTTCGACACTTCGACACCTTCTTAGACACCTTCTA
Found at i:104748 original size:36 final size:34
Alignment explanation
Indices: 104701--104782 Score: 112
Period size: 36 Copynumber: 2.4 Consensus size: 34
104691 GGTGATTTCA
104701 ATTTTGGAGTCTATTTTGG-AGTCTATTGTGGAATCT
1 ATTTTGGAGTCTATTTTGGCA-TCT-TT-TGGAATCT
*
104737 ATTTTGGAGTCTATTTTGGCATCTTTTGGATTCT
1 ATTTTGGAGTCTATTTTGGCATCTTTTGGAATCT
*
104771 ATATTGGAGTCT
1 ATTTTGGAGTCT
104783 TCTGTAGTCT
Statistics
Matches: 43, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
34 18 0.42
35 2 0.05
36 22 0.51
37 1 0.02
ACGTcount: A:0.18, C:0.10, G:0.23, T:0.49
Consensus pattern (34 bp):
ATTTTGGAGTCTATTTTGGCATCTTTTGGAATCT
Left flanking sequence: Indices 104201 -- 104700
GCCGGCCCCGCCCGCTCCGGTGGCCCCACAGACGATGCAGCAGCAGCCGCCGCTCCAGCAGCAGC
CGCTGTATCTTCCCCAGTACCAGCAGCAGCCGATGCAGCACCACCAGCCGCCGCAGCAGCCCCAC
CAGCAGCAGCAGATGCCCTACCACCAGCAGCGCGCGGGGATCCCGCCGCAGCAGATGCCGTACTA
CAACAAGCCCTACTAATAGACCCGATGTATAACTATGTATTAATTAATCAGTAATAGGAGGGTGG
GGGTAGAGGTGGTAGCCGGGCTGGTGGTACATACTAATGATAATGCTATGAACAATGAATGCTCC
AACAGTGACACTATGAACACGGAATGCTGTGGTGAATATGATGGATACTATATCGAATATAATGT
TGATACACCACGGTACCAGCTGGGGGGCCGCAGGCGGCGCCCCCCAGACCCCCCACCGCTTTCTT
GGTGGGGTGTGATACTATTTTGTTTGTATTGCTTTGGTGATTTCA
Right flanking sequence: Indices 104783 -- 105282
TCTGTAGTCTTTTGGAGTCGGTACCAGCTGGGGGGCCGCAGGCGGCGCCCCCCAGACCCCCCACC
GCTTTCTTGGTGGGTTGTGATACTATTACTTTTGTATTATTTTGATGAGTTCTATTTTGGAGTGT
TTTGAAGTCTATTTTGAAGTCTGTTGAAGTCTATTTTGGAGTCTATTTTGGAAACTATTTTTGAG
AATTGGAGTCTTTCGGAGTATAGTGCAGTCTTTTGGAATCTATTGTGGAGCCTATTATGGTGTCT
TTCGAAGTCTATTTTGAAGTCTATTTTCGTGCGTACTATTATGTTAATTTCTGTTCTGAAAAATA
CGTATTTGTAATTGTATTTGATAATACTGTAAATATTATGAACGCTACGGACCGTTGTCGTATAA
CCACATATTCCACTTGCATGTATGCTTTCTGGATAGACGCTTGGTAGACGCCTTTCGACACCTCT
TTTCGGACACTTTCGACACTTCGACACCTTCTTAGACACCTTCTA
Found at i:104926 original size:22 final size:22
Alignment explanation
Indices: 104898--104956 Score: 91
Period size: 22 Copynumber: 2.7 Consensus size: 22
104888 TTTGATGAGT
* *
104898 TCTATTTTGGAGTGTTTTGAAG
1 TCTATTTTGGAGTCTGTTGAAG
*
104920 TCTATTTTGAAGTCTGTTGAAG
1 TCTATTTTGGAGTCTGTTGAAG
104942 TCTATTTTGGAGTCT
1 TCTATTTTGGAGTCT
104957 ATTTTGGAAA
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
22 33 1.00
ACGTcount: A:0.19, C:0.08, G:0.24, T:0.49
Consensus pattern (22 bp):
TCTATTTTGGAGTCTGTTGAAG
Left flanking sequence: Indices 104398 -- 104897
ACAAGCCCTACTAATAGACCCGATGTATAACTATGTATTAATTAATCAGTAATAGGAGGGTGGGG
GTAGAGGTGGTAGCCGGGCTGGTGGTACATACTAATGATAATGCTATGAACAATGAATGCTCCAA
CAGTGACACTATGAACACGGAATGCTGTGGTGAATATGATGGATACTATATCGAATATAATGTTG
ATACACCACGGTACCAGCTGGGGGGCCGCAGGCGGCGCCCCCCAGACCCCCCACCGCTTTCTTGG
TGGGGTGTGATACTATTTTGTTTGTATTGCTTTGGTGATTTCAATTTTGGAGTCTATTTTGGAGT
CTATTGTGGAATCTATTTTGGAGTCTATTTTGGCATCTTTTGGATTCTATATTGGAGTCTTCTGT
AGTCTTTTGGAGTCGGTACCAGCTGGGGGGCCGCAGGCGGCGCCCCCCAGACCCCCCACCGCTTT
CTTGGTGGGTTGTGATACTATTACTTTTGTATTATTTTGATGAGT
Right flanking sequence: Indices 104957 -- 105456
ATTTTGGAAACTATTTTTGAGAATTGGAGTCTTTCGGAGTATAGTGCAGTCTTTTGGAATCTATT
GTGGAGCCTATTATGGTGTCTTTCGAAGTCTATTTTGAAGTCTATTTTCGTGCGTACTATTATGT
TAATTTCTGTTCTGAAAAATACGTATTTGTAATTGTATTTGATAATACTGTAAATATTATGAACG
CTACGGACCGTTGTCGTATAACCACATATTCCACTTGCATGTATGCTTTCTGGATAGACGCTTGG
TAGACGCCTTTCGACACCTCTTTTCGGACACTTTCGACACTTCGACACCTTCTTAGACACCTTCT
ATAAGAAACCTTTTCTTAAACACCGATTTTCTGATTCCATTGTGTCCGTTCACAGACATTCTCTG
CGTAAACAGAACCGTTGCAACCATTCATAAACACACCGTTGCAACCATTCGTAAACACAACCGTT
GCAACCATTCGTAACCGTTGCAACCATCCATTGTGTAGGGTTACC
Found at i:104964 original size:12 final size:12
Alignment explanation
Indices: 104912--104962 Score: 70
Period size: 12 Copynumber: 4.4 Consensus size: 12
104902 TTTTGGAGTG
104912 TTTTGAAGTCTA
1 TTTTGAAGTCTA
104924 TTTTGAAGTC--
1 TTTTGAAGTCTA
*
104934 TGTTGAAGTCTA
1 TTTTGAAGTCTA
*
104946 TTTTGGAGTCTA
1 TTTTGAAGTCTA
104958 TTTTG
1 TTTTG
104963 GAAACTATTT
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
10 9 0.26
12 25 0.74
ACGTcount: A:0.20, C:0.08, G:0.22, T:0.51
Consensus pattern (12 bp):
TTTTGAAGTCTA
Left flanking sequence: Indices 104412 -- 104911
TAGACCCGATGTATAACTATGTATTAATTAATCAGTAATAGGAGGGTGGGGGTAGAGGTGGTAGC
CGGGCTGGTGGTACATACTAATGATAATGCTATGAACAATGAATGCTCCAACAGTGACACTATGA
ACACGGAATGCTGTGGTGAATATGATGGATACTATATCGAATATAATGTTGATACACCACGGTAC
CAGCTGGGGGGCCGCAGGCGGCGCCCCCCAGACCCCCCACCGCTTTCTTGGTGGGGTGTGATACT
ATTTTGTTTGTATTGCTTTGGTGATTTCAATTTTGGAGTCTATTTTGGAGTCTATTGTGGAATCT
ATTTTGGAGTCTATTTTGGCATCTTTTGGATTCTATATTGGAGTCTTCTGTAGTCTTTTGGAGTC
GGTACCAGCTGGGGGGCCGCAGGCGGCGCCCCCCAGACCCCCCACCGCTTTCTTGGTGGGTTGTG
ATACTATTACTTTTGTATTATTTTGATGAGTTCTATTTTGGAGTG
Right flanking sequence: Indices 104963 -- 105462
GAAACTATTTTTGAGAATTGGAGTCTTTCGGAGTATAGTGCAGTCTTTTGGAATCTATTGTGGAG
CCTATTATGGTGTCTTTCGAAGTCTATTTTGAAGTCTATTTTCGTGCGTACTATTATGTTAATTT
CTGTTCTGAAAAATACGTATTTGTAATTGTATTTGATAATACTGTAAATATTATGAACGCTACGG
ACCGTTGTCGTATAACCACATATTCCACTTGCATGTATGCTTTCTGGATAGACGCTTGGTAGACG
CCTTTCGACACCTCTTTTCGGACACTTTCGACACTTCGACACCTTCTTAGACACCTTCTATAAGA
AACCTTTTCTTAAACACCGATTTTCTGATTCCATTGTGTCCGTTCACAGACATTCTCTGCGTAAA
CAGAACCGTTGCAACCATTCATAAACACACCGTTGCAACCATTCGTAAACACAACCGTTGCAACC
ATTCGTAACCGTTGCAACCATCCATTGTGTAGGGTTACCCCACAA
Found at i:105386 original size:24 final size:25
Alignment explanation
Indices: 105349--105421 Score: 121
Period size: 24 Copynumber: 3.0 Consensus size: 25
105339 ATTCTCTGCG
*
105349 TAAACAGAACCGTTGCAACCATTCA
1 TAAACACAACCGTTGCAACCATTCA
*
105374 TAAACAC-ACCGTTGCAACCATTCG
1 TAAACACAACCGTTGCAACCATTCA
105398 TAAACACAACCGTTGCAACCATTC
1 TAAACACAACCGTTGCAACCATTC
105422 GTAACCGTTG
Statistics
Matches: 45, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
24 23 0.51
25 22 0.49
ACGTcount: A:0.37, C:0.32, G:0.11, T:0.21
Consensus pattern (25 bp):
TAAACACAACCGTTGCAACCATTCA
Left flanking sequence: Indices 104849 -- 105348
CTTTCTTGGTGGGTTGTGATACTATTACTTTTGTATTATTTTGATGAGTTCTATTTTGGAGTGTT
TTGAAGTCTATTTTGAAGTCTGTTGAAGTCTATTTTGGAGTCTATTTTGGAAACTATTTTTGAGA
ATTGGAGTCTTTCGGAGTATAGTGCAGTCTTTTGGAATCTATTGTGGAGCCTATTATGGTGTCTT
TCGAAGTCTATTTTGAAGTCTATTTTCGTGCGTACTATTATGTTAATTTCTGTTCTGAAAAATAC
GTATTTGTAATTGTATTTGATAATACTGTAAATATTATGAACGCTACGGACCGTTGTCGTATAAC
CACATATTCCACTTGCATGTATGCTTTCTGGATAGACGCTTGGTAGACGCCTTTCGACACCTCTT
TTCGGACACTTTCGACACTTCGACACCTTCTTAGACACCTTCTATAAGAAACCTTTTCTTAAACA
CCGATTTTCTGATTCCATTGTGTCCGTTCACAGACATTCTCTGCG
Right flanking sequence: Indices 105422 -- 105921
GTAACCGTTGCAACCATCCATTGTGTAGGGTTACCCCACAATAATACCCGTGGCTCCAATAATAC
TCGTGGCTCTAATACTCGTGGCTCCAATAATACTCATGGCTCTAATAATACTCGTAGCACAGCTC
TAATAATACTCGTAGCACAGCTGTAATACTCGTAGCCCATGTCGCACCCATTATTTATTAACTAC
TCGCAATCTTCCGCTCCACCACATCGATCTTGTCCTGGGGCAGCTGCTTCTTGTCGGTCCGCGAC
CCCACCCGGATGTCCAGCTGGATGCGCACCACCCCCAGCTGGTGGAGTGCCTCGTGGAACCGCCC
AATCAACTCCATCACTTCGCTCCACGGCCCCTCGATGGTGGTGCCCGCGGAGTGGAGCGTGGTGT
GCAACGGCAGTTCGCGCGCCATCCGGGTCACGAGCGTCACCTCGTCCAGCACCAGCGCCAGCCCG
GTGCCAATGGGGATAATACAGACGTCAGCAAGACAGTGGAGATCA
Found at i:105415 original size:25 final size:25
Alignment explanation
Indices: 105347--105425 Score: 133
Period size: 25 Copynumber: 3.2 Consensus size: 25
105337 ACATTCTCTG
*
105347 CGTAAACAGAACCGTTGCAACCATT
1 CGTAAACACAACCGTTGCAACCATT
*
105372 CATAAACAC-ACCGTTGCAACCATT
1 CGTAAACACAACCGTTGCAACCATT
105396 CGTAAACACAACCGTTGCAACCATT
1 CGTAAACACAACCGTTGCAACCATT
105421 CGTAA
1 CGTAA
105426 CCGTTGCAAC
Statistics
Matches: 50, Mismatches: 3, Indels: 2
0.91 0.05 0.04
Matches are distributed among these distances:
24 23 0.46
25 27 0.54
ACGTcount: A:0.37, C:0.30, G:0.13, T:0.20
Consensus pattern (25 bp):
CGTAAACACAACCGTTGCAACCATT
Left flanking sequence: Indices 104847 -- 105346
CGCTTTCTTGGTGGGTTGTGATACTATTACTTTTGTATTATTTTGATGAGTTCTATTTTGGAGTG
TTTTGAAGTCTATTTTGAAGTCTGTTGAAGTCTATTTTGGAGTCTATTTTGGAAACTATTTTTGA
GAATTGGAGTCTTTCGGAGTATAGTGCAGTCTTTTGGAATCTATTGTGGAGCCTATTATGGTGTC
TTTCGAAGTCTATTTTGAAGTCTATTTTCGTGCGTACTATTATGTTAATTTCTGTTCTGAAAAAT
ACGTATTTGTAATTGTATTTGATAATACTGTAAATATTATGAACGCTACGGACCGTTGTCGTATA
ACCACATATTCCACTTGCATGTATGCTTTCTGGATAGACGCTTGGTAGACGCCTTTCGACACCTC
TTTTCGGACACTTTCGACACTTCGACACCTTCTTAGACACCTTCTATAAGAAACCTTTTCTTAAA
CACCGATTTTCTGATTCCATTGTGTCCGTTCACAGACATTCTCTG
Right flanking sequence: Indices 105426 -- 105925
CCGTTGCAACCATCCATTGTGTAGGGTTACCCCACAATAATACCCGTGGCTCCAATAATACTCGT
GGCTCTAATACTCGTGGCTCCAATAATACTCATGGCTCTAATAATACTCGTAGCACAGCTCTAAT
AATACTCGTAGCACAGCTGTAATACTCGTAGCCCATGTCGCACCCATTATTTATTAACTACTCGC
AATCTTCCGCTCCACCACATCGATCTTGTCCTGGGGCAGCTGCTTCTTGTCGGTCCGCGACCCCA
CCCGGATGTCCAGCTGGATGCGCACCACCCCCAGCTGGTGGAGTGCCTCGTGGAACCGCCCAATC
AACTCCATCACTTCGCTCCACGGCCCCTCGATGGTGGTGCCCGCGGAGTGGAGCGTGGTGTGCAA
CGGCAGTTCGCGCGCCATCCGGGTCACGAGCGTCACCTCGTCCAGCACCAGCGCCAGCCCGGTGC
CAATGGGGATAATACAGACGTCAGCAAGACAGTGGAGATCAACCA
Found at i:105483 original size:18 final size:18
Alignment explanation
Indices: 105460--105541 Score: 116
Period size: 18 Copynumber: 4.7 Consensus size: 18
105450 GGTTACCCCA
*
105460 CAATAATACCCGTGGCTC
1 CAATAATACTCGTGGCTC
105478 CAATAATACTCGTGGCT-
1 CAATAATACTCGTGGCTC
105495 C--TAATACTCGTGGCTC
1 CAATAATACTCGTGGCTC
*
105511 CAATAATACTCATGGCTC
1 CAATAATACTCGTGGCTC
*
105529 TAATAATACTCGT
1 CAATAATACTCGT
105542 AGCACAGCTC
Statistics
Matches: 57, Mismatches: 4, Indels: 6
0.85 0.06 0.09
Matches are distributed among these distances:
15 14 0.25
16 1 0.02
17 1 0.02
18 41 0.72
ACGTcount: A:0.29, C:0.27, G:0.15, T:0.29
Consensus pattern (18 bp):
CAATAATACTCGTGGCTC
Left flanking sequence: Indices 104960 -- 105459
TTGGAAACTATTTTTGAGAATTGGAGTCTTTCGGAGTATAGTGCAGTCTTTTGGAATCTATTGTG
GAGCCTATTATGGTGTCTTTCGAAGTCTATTTTGAAGTCTATTTTCGTGCGTACTATTATGTTAA
TTTCTGTTCTGAAAAATACGTATTTGTAATTGTATTTGATAATACTGTAAATATTATGAACGCTA
CGGACCGTTGTCGTATAACCACATATTCCACTTGCATGTATGCTTTCTGGATAGACGCTTGGTAG
ACGCCTTTCGACACCTCTTTTCGGACACTTTCGACACTTCGACACCTTCTTAGACACCTTCTATA
AGAAACCTTTTCTTAAACACCGATTTTCTGATTCCATTGTGTCCGTTCACAGACATTCTCTGCGT
AAACAGAACCGTTGCAACCATTCATAAACACACCGTTGCAACCATTCGTAAACACAACCGTTGCA
ACCATTCGTAACCGTTGCAACCATCCATTGTGTAGGGTTACCCCA
Right flanking sequence: Indices 105542 -- 106041
AGCACAGCTCTAATAATACTCGTAGCACAGCTGTAATACTCGTAGCCCATGTCGCACCCATTATT
TATTAACTACTCGCAATCTTCCGCTCCACCACATCGATCTTGTCCTGGGGCAGCTGCTTCTTGTC
GGTCCGCGACCCCACCCGGATGTCCAGCTGGATGCGCACCACCCCCAGCTGGTGGAGTGCCTCGT
GGAACCGCCCAATCAACTCCATCACTTCGCTCCACGGCCCCTCGATGGTGGTGCCCGCGGAGTGG
AGCGTGGTGTGCAACGGCAGTTCGCGCGCCATCCGGGTCACGAGCGTCACCTCGTCCAGCACCAG
CGCCAGCCCGGTGCCAATGGGGATAATACAGACGTCAGCAAGACAGTGGAGATCAACCATGGTCA
GATGTGGATTTTGCCGCGCGTAAATAATACTGTATGGTCGACATATAGGCGTGGACGCAACCATA
CCTGGACAATTAGATCCATCAACAGCACATCAACAGCACACGGTG
Found at i:105499 original size:15 final size:15
Alignment explanation
Indices: 105481--105533 Score: 70
Period size: 15 Copynumber: 3.3 Consensus size: 15
105471 GTGGCTCCAA
105481 TAATACTCGTGGCTC
1 TAATACTCGTGGCTC
105496 TAATACTCGTGGCTCC
1 TAATACTCGTGGCT-C
*
105512 AATAATACTCATGGCTC
1 --TAATACTCGTGGCTC
105529 TAATA
1 TAATA
105534 ATACTCGTAG
Statistics
Matches: 34, Mismatches: 1, Indels: 6
0.83 0.02 0.15
Matches are distributed among these distances:
15 19 0.56
16 1 0.03
17 1 0.03
18 13 0.38
ACGTcount: A:0.28, C:0.25, G:0.15, T:0.32
Consensus pattern (15 bp):
TAATACTCGTGGCTC
Left flanking sequence: Indices 104981 -- 105480
TGGAGTCTTTCGGAGTATAGTGCAGTCTTTTGGAATCTATTGTGGAGCCTATTATGGTGTCTTTC
GAAGTCTATTTTGAAGTCTATTTTCGTGCGTACTATTATGTTAATTTCTGTTCTGAAAAATACGT
ATTTGTAATTGTATTTGATAATACTGTAAATATTATGAACGCTACGGACCGTTGTCGTATAACCA
CATATTCCACTTGCATGTATGCTTTCTGGATAGACGCTTGGTAGACGCCTTTCGACACCTCTTTT
CGGACACTTTCGACACTTCGACACCTTCTTAGACACCTTCTATAAGAAACCTTTTCTTAAACACC
GATTTTCTGATTCCATTGTGTCCGTTCACAGACATTCTCTGCGTAAACAGAACCGTTGCAACCAT
TCATAAACACACCGTTGCAACCATTCGTAAACACAACCGTTGCAACCATTCGTAACCGTTGCAAC
CATCCATTGTGTAGGGTTACCCCACAATAATACCCGTGGCTCCAA
Right flanking sequence: Indices 105534 -- 106033
ATACTCGTAGCACAGCTCTAATAATACTCGTAGCACAGCTGTAATACTCGTAGCCCATGTCGCAC
CCATTATTTATTAACTACTCGCAATCTTCCGCTCCACCACATCGATCTTGTCCTGGGGCAGCTGC
TTCTTGTCGGTCCGCGACCCCACCCGGATGTCCAGCTGGATGCGCACCACCCCCAGCTGGTGGAG
TGCCTCGTGGAACCGCCCAATCAACTCCATCACTTCGCTCCACGGCCCCTCGATGGTGGTGCCCG
CGGAGTGGAGCGTGGTGTGCAACGGCAGTTCGCGCGCCATCCGGGTCACGAGCGTCACCTCGTCC
AGCACCAGCGCCAGCCCGGTGCCAATGGGGATAATACAGACGTCAGCAAGACAGTGGAGATCAAC
CATGGTCAGATGTGGATTTTGCCGCGCGTAAATAATACTGTATGGTCGACATATAGGCGTGGACG
CAACCATACCTGGACAATTAGATCCATCAACAGCACATCAACAGC
Found at i:105507 original size:33 final size:33
Alignment explanation
Indices: 105463--105533 Score: 124
Period size: 33 Copynumber: 2.2 Consensus size: 33
105453 TACCCCACAA
*
105463 TAATACCCGTGGCTCCAATAATACTCGTGGCTC
1 TAATACCCGTGGCTCCAATAATACTCATGGCTC
*
105496 TAATACTCGTGGCTCCAATAATACTCATGGCTC
1 TAATACCCGTGGCTCCAATAATACTCATGGCTC
105529 TAATA
1 TAATA
105534 ATACTCGTAG
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
33 36 1.00
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.30
Consensus pattern (33 bp):
TAATACCCGTGGCTCCAATAATACTCATGGCTC
Left flanking sequence: Indices 104963 -- 105462
GAAACTATTTTTGAGAATTGGAGTCTTTCGGAGTATAGTGCAGTCTTTTGGAATCTATTGTGGAG
CCTATTATGGTGTCTTTCGAAGTCTATTTTGAAGTCTATTTTCGTGCGTACTATTATGTTAATTT
CTGTTCTGAAAAATACGTATTTGTAATTGTATTTGATAATACTGTAAATATTATGAACGCTACGG
ACCGTTGTCGTATAACCACATATTCCACTTGCATGTATGCTTTCTGGATAGACGCTTGGTAGACG
CCTTTCGACACCTCTTTTCGGACACTTTCGACACTTCGACACCTTCTTAGACACCTTCTATAAGA
AACCTTTTCTTAAACACCGATTTTCTGATTCCATTGTGTCCGTTCACAGACATTCTCTGCGTAAA
CAGAACCGTTGCAACCATTCATAAACACACCGTTGCAACCATTCGTAAACACAACCGTTGCAACC
ATTCGTAACCGTTGCAACCATCCATTGTGTAGGGTTACCCCACAA
Right flanking sequence: Indices 105534 -- 106033
ATACTCGTAGCACAGCTCTAATAATACTCGTAGCACAGCTGTAATACTCGTAGCCCATGTCGCAC
CCATTATTTATTAACTACTCGCAATCTTCCGCTCCACCACATCGATCTTGTCCTGGGGCAGCTGC
TTCTTGTCGGTCCGCGACCCCACCCGGATGTCCAGCTGGATGCGCACCACCCCCAGCTGGTGGAG
TGCCTCGTGGAACCGCCCAATCAACTCCATCACTTCGCTCCACGGCCCCTCGATGGTGGTGCCCG
CGGAGTGGAGCGTGGTGTGCAACGGCAGTTCGCGCGCCATCCGGGTCACGAGCGTCACCTCGTCC
AGCACCAGCGCCAGCCCGGTGCCAATGGGGATAATACAGACGTCAGCAAGACAGTGGAGATCAAC
CATGGTCAGATGTGGATTTTGCCGCGCGTAAATAATACTGTATGGTCGACATATAGGCGTGGACG
CAACCATACCTGGACAATTAGATCCATCAACAGCACATCAACAGC
Found at i:105551 original size:23 final size:23
Alignment explanation
Indices: 105525--105579 Score: 101
Period size: 23 Copynumber: 2.4 Consensus size: 23
105515 AATACTCATG
105525 GCTCTAATAATACTCGTAGCACA
1 GCTCTAATAATACTCGTAGCACA
105548 GCTCTAATAATACTCGTAGCACA
1 GCTCTAATAATACTCGTAGCACA
*
105571 GCTGTAATA
1 GCTCTAATA
105580 CTCGTAGCCC
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
23 31 1.00
ACGTcount: A:0.35, C:0.24, G:0.15, T:0.27
Consensus pattern (23 bp):
GCTCTAATAATACTCGTAGCACA
Left flanking sequence: Indices 105025 -- 105524
GAGCCTATTATGGTGTCTTTCGAAGTCTATTTTGAAGTCTATTTTCGTGCGTACTATTATGTTAA
TTTCTGTTCTGAAAAATACGTATTTGTAATTGTATTTGATAATACTGTAAATATTATGAACGCTA
CGGACCGTTGTCGTATAACCACATATTCCACTTGCATGTATGCTTTCTGGATAGACGCTTGGTAG
ACGCCTTTCGACACCTCTTTTCGGACACTTTCGACACTTCGACACCTTCTTAGACACCTTCTATA
AGAAACCTTTTCTTAAACACCGATTTTCTGATTCCATTGTGTCCGTTCACAGACATTCTCTGCGT
AAACAGAACCGTTGCAACCATTCATAAACACACCGTTGCAACCATTCGTAAACACAACCGTTGCA
ACCATTCGTAACCGTTGCAACCATCCATTGTGTAGGGTTACCCCACAATAATACCCGTGGCTCCA
ATAATACTCGTGGCTCTAATACTCGTGGCTCCAATAATACTCATG
Right flanking sequence: Indices 105580 -- 106079
CTCGTAGCCCATGTCGCACCCATTATTTATTAACTACTCGCAATCTTCCGCTCCACCACATCGAT
CTTGTCCTGGGGCAGCTGCTTCTTGTCGGTCCGCGACCCCACCCGGATGTCCAGCTGGATGCGCA
CCACCCCCAGCTGGTGGAGTGCCTCGTGGAACCGCCCAATCAACTCCATCACTTCGCTCCACGGC
CCCTCGATGGTGGTGCCCGCGGAGTGGAGCGTGGTGTGCAACGGCAGTTCGCGCGCCATCCGGGT
CACGAGCGTCACCTCGTCCAGCACCAGCGCCAGCCCGGTGCCAATGGGGATAATACAGACGTCAG
CAAGACAGTGGAGATCAACCATGGTCAGATGTGGATTTTGCCGCGCGTAAATAATACTGTATGGT
CGACATATAGGCGTGGACGCAACCATACCTGGACAATTAGATCCATCAACAGCACATCAACAGCA
CACGGTGCATCAACCCACTTGCCACCACTAGCCACCCATCGACCA
Found at i:105580 original size:20 final size:22
Alignment explanation
Indices: 105528--105587 Score: 88
Period size: 23 Copynumber: 2.8 Consensus size: 22
105518 ACTCATGGCT
105528 CTAATAATACTCGTAGCACAGC
1 CTAATAATACTCGTAGCACAGC
105550 TCTAATAATACTCGTAGCACAG-
1 -CTAATAATACTCGTAGCACAGC
*
105572 CT-GTAATACTCGTAGC
1 CTAATAATACTCGTAGC
105588 CCATGTCGCA
Statistics
Matches: 36, Mismatches: 1, Indels: 3
0.90 0.03 0.08
Matches are distributed among these distances:
20 13 0.36
21 2 0.06
23 21 0.58
ACGTcount: A:0.33, C:0.25, G:0.15, T:0.27
Consensus pattern (22 bp):
CTAATAATACTCGTAGCACAGC
Left flanking sequence: Indices 105028 -- 105527
CCTATTATGGTGTCTTTCGAAGTCTATTTTGAAGTCTATTTTCGTGCGTACTATTATGTTAATTT
CTGTTCTGAAAAATACGTATTTGTAATTGTATTTGATAATACTGTAAATATTATGAACGCTACGG
ACCGTTGTCGTATAACCACATATTCCACTTGCATGTATGCTTTCTGGATAGACGCTTGGTAGACG
CCTTTCGACACCTCTTTTCGGACACTTTCGACACTTCGACACCTTCTTAGACACCTTCTATAAGA
AACCTTTTCTTAAACACCGATTTTCTGATTCCATTGTGTCCGTTCACAGACATTCTCTGCGTAAA
CAGAACCGTTGCAACCATTCATAAACACACCGTTGCAACCATTCGTAAACACAACCGTTGCAACC
ATTCGTAACCGTTGCAACCATCCATTGTGTAGGGTTACCCCACAATAATACCCGTGGCTCCAATA
ATACTCGTGGCTCTAATACTCGTGGCTCCAATAATACTCATGGCT
Right flanking sequence: Indices 105588 -- 106087
CCATGTCGCACCCATTATTTATTAACTACTCGCAATCTTCCGCTCCACCACATCGATCTTGTCCT
GGGGCAGCTGCTTCTTGTCGGTCCGCGACCCCACCCGGATGTCCAGCTGGATGCGCACCACCCCC
AGCTGGTGGAGTGCCTCGTGGAACCGCCCAATCAACTCCATCACTTCGCTCCACGGCCCCTCGAT
GGTGGTGCCCGCGGAGTGGAGCGTGGTGTGCAACGGCAGTTCGCGCGCCATCCGGGTCACGAGCG
TCACCTCGTCCAGCACCAGCGCCAGCCCGGTGCCAATGGGGATAATACAGACGTCAGCAAGACAG
TGGAGATCAACCATGGTCAGATGTGGATTTTGCCGCGCGTAAATAATACTGTATGGTCGACATAT
AGGCGTGGACGCAACCATACCTGGACAATTAGATCCATCAACAGCACATCAACAGCACACGGTGC
ATCAACCCACTTGCCACCACTAGCCACCCATCGACCATGACCGAC
Found at i:107618 original size:24 final size:24
Alignment explanation
Indices: 107591--107644 Score: 90
Period size: 24 Copynumber: 2.2 Consensus size: 24
107581 TAGTCGCCAC
*
107591 TCAGACAGTAGCGAGACCCACCAA
1 TCAGACAGTACCGAGACCCACCAA
*
107615 TCAGTCAGTACCGAGACCCACCAA
1 TCAGACAGTACCGAGACCCACCAA
107639 TCAGAC
1 TCAGAC
107645 CCAGACCCAG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.35, C:0.35, G:0.19, T:0.11
Consensus pattern (24 bp):
TCAGACAGTACCGAGACCCACCAA
Left flanking sequence: Indices 107091 -- 107590
TCTGGAGGTGGTTCACCGCAGGGTACCAAGATCGATTCCGACCGGGACTGGCGCGATGCAGGGAC
GAACTTGCCCCGCATGAATATTTTCCCACGGAGGCGTCGGGGAAAGGTTAAACGGGGGAAGACGC
CGACGGCGGTGGTGGGCGGGAAAATAGCACAAGGCGGAGGCATCGGGCATCTGGGTGCGGCCAGG
GGGCGTTTGCACGGGTGGAAGTTTGACAGGACAAGGCCTGGGCGATGATTTAGCTGCAAACTGCC
ACAAAGTGGGATTGCGTCATGGACGACCAGGAATGCGAGATAGGGGCCAAATTGGAGGACAATTA
GAGGACAAGTTGGAGGGCGAGTTTGTAGGGGGGCTTCTAGCTATGGGAAGGAAGGGGAAGGGTGG
TTAATCCTTTATTATCAGACGCTCGATTAGCGACGGGTGGCTCTGACGTATGGTTTACAGTATGC
ACCCTGCGAACTAGCCGCCAACTACGCAGTCACCATAGTCGCCAC
Right flanking sequence: Indices 107645 -- 108144
CCAGACCCAGACCAACCACCCAAACCCAGACCCAGACTCAAATCGAGACCCGCACCACTGTAGCT
ACACACCACCGTAGCTAAACACCACCGTAGCTAAACACCACTGTAGCTAAAAACCACCCAATCTC
CATCCCCACCACCCAGTCTCCATCCCCACCACCTAATCTACATCCCCACCACTCATCCACCATCT
CCACTTATCACCATCCCTACCCTCTCCACTTATCCACCACCCTCTCCATCTCCACCCCACCACCC
TCTTCATCCCACCACCCTCTCCATCTCCTCCACCCCACCACTCTCTCACCCCTTTCCCCCTCCTC
CTTCCCCCTCCTCGGACTTGGGTTTGCAGCCCGACCCGTGCGGCGCGCACCGCACTTTTCCACCC
AAATTGCTACCAGTTGCCACCAACGAAATATCTCAAAATGTCTAGTGCCATGCAAGTGGATAGCC
CCGAGATCGACGAAGGGCTCTACTCGCGTCAATTGTATGTGCTCG
Found at i:107662 original size:25 final size:25
Alignment explanation
Indices: 107628--107681 Score: 72
Period size: 25 Copynumber: 2.2 Consensus size: 25
107618 GTCAGTACCG
* * *
107628 AGACCCACCAATCAGACCCAGACCC
1 AGACCAACCAACCAAACCCAGACCC
*
107653 AGACCAACCACCCAAACCCAGACCC
1 AGACCAACCAACCAAACCCAGACCC
107678 AGAC
1 AGAC
107682 TCAAATCGAG
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.39, C:0.48, G:0.11, T:0.02
Consensus pattern (25 bp):
AGACCAACCAACCAAACCCAGACCC
Left flanking sequence: Indices 107128 -- 107627
CCGACCGGGACTGGCGCGATGCAGGGACGAACTTGCCCCGCATGAATATTTTCCCACGGAGGCGT
CGGGGAAAGGTTAAACGGGGGAAGACGCCGACGGCGGTGGTGGGCGGGAAAATAGCACAAGGCGG
AGGCATCGGGCATCTGGGTGCGGCCAGGGGGCGTTTGCACGGGTGGAAGTTTGACAGGACAAGGC
CTGGGCGATGATTTAGCTGCAAACTGCCACAAAGTGGGATTGCGTCATGGACGACCAGGAATGCG
AGATAGGGGCCAAATTGGAGGACAATTAGAGGACAAGTTGGAGGGCGAGTTTGTAGGGGGGCTTC
TAGCTATGGGAAGGAAGGGGAAGGGTGGTTAATCCTTTATTATCAGACGCTCGATTAGCGACGGG
TGGCTCTGACGTATGGTTTACAGTATGCACCCTGCGAACTAGCCGCCAACTACGCAGTCACCATA
GTCGCCACTCAGACAGTAGCGAGACCCACCAATCAGTCAGTACCG
Right flanking sequence: Indices 107682 -- 108181
TCAAATCGAGACCCGCACCACTGTAGCTACACACCACCGTAGCTAAACACCACCGTAGCTAAACA
CCACTGTAGCTAAAAACCACCCAATCTCCATCCCCACCACCCAGTCTCCATCCCCACCACCTAAT
CTACATCCCCACCACTCATCCACCATCTCCACTTATCACCATCCCTACCCTCTCCACTTATCCAC
CACCCTCTCCATCTCCACCCCACCACCCTCTTCATCCCACCACCCTCTCCATCTCCTCCACCCCA
CCACTCTCTCACCCCTTTCCCCCTCCTCCTTCCCCCTCCTCGGACTTGGGTTTGCAGCCCGACCC
GTGCGGCGCGCACCGCACTTTTCCACCCAAATTGCTACCAGTTGCCACCAACGAAATATCTCAAA
ATGTCTAGTGCCATGCAAGTGGATAGCCCCGAGATCGACGAAGGGCTCTACTCGCGTCAATTGTA
TGTGCTCGGCAAGGAGGCCATGCTCAAAATGCAGGCGGCCAACGT
Found at i:107748 original size:13 final size:16
Alignment explanation
Indices: 107697--107767 Score: 106
Period size: 16 Copynumber: 4.4 Consensus size: 16
107687 TCGAGACCCG
* *
107697 CACCACTGTAGCTACA
1 CACCACCGTAGCTAAA
107713 CACCACCGTAGCTAAA
1 CACCACCGTAGCTAAA
107729 CACCACCGTAGCTAAA
1 CACCACCGTAGCTAAA
*
107745 CACCACTGTAGCTAAA
1 CACCACCGTAGCTAAA
*
107761 AACCACC
1 CACCACC
107768 CAATCTCCAT
Statistics
Matches: 50, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 50 1.00
ACGTcount: A:0.37, C:0.38, G:0.11, T:0.14
Consensus pattern (16 bp):
CACCACCGTAGCTAAA
Left flanking sequence: Indices 107197 -- 107696
GAAAGGTTAAACGGGGGAAGACGCCGACGGCGGTGGTGGGCGGGAAAATAGCACAAGGCGGAGGC
ATCGGGCATCTGGGTGCGGCCAGGGGGCGTTTGCACGGGTGGAAGTTTGACAGGACAAGGCCTGG
GCGATGATTTAGCTGCAAACTGCCACAAAGTGGGATTGCGTCATGGACGACCAGGAATGCGAGAT
AGGGGCCAAATTGGAGGACAATTAGAGGACAAGTTGGAGGGCGAGTTTGTAGGGGGGCTTCTAGC
TATGGGAAGGAAGGGGAAGGGTGGTTAATCCTTTATTATCAGACGCTCGATTAGCGACGGGTGGC
TCTGACGTATGGTTTACAGTATGCACCCTGCGAACTAGCCGCCAACTACGCAGTCACCATAGTCG
CCACTCAGACAGTAGCGAGACCCACCAATCAGTCAGTACCGAGACCCACCAATCAGACCCAGACC
CAGACCAACCACCCAAACCCAGACCCAGACTCAAATCGAGACCCG
Right flanking sequence: Indices 107768 -- 108267
CAATCTCCATCCCCACCACCCAGTCTCCATCCCCACCACCTAATCTACATCCCCACCACTCATCC
ACCATCTCCACTTATCACCATCCCTACCCTCTCCACTTATCCACCACCCTCTCCATCTCCACCCC
ACCACCCTCTTCATCCCACCACCCTCTCCATCTCCTCCACCCCACCACTCTCTCACCCCTTTCCC
CCTCCTCCTTCCCCCTCCTCGGACTTGGGTTTGCAGCCCGACCCGTGCGGCGCGCACCGCACTTT
TCCACCCAAATTGCTACCAGTTGCCACCAACGAAATATCTCAAAATGTCTAGTGCCATGCAAGTG
GATAGCCCCGAGATCGACGAAGGGCTCTACTCGCGTCAATTGTATGTGCTCGGCAAGGAGGCCAT
GCTCAAAATGCAGGCGGCCAACGTGCTCGTGGTGGGGCTCAAGGGCCTCGGAGTCGAGATCGCCA
AGAACGTGGCCCTCGCCGGAGTCAAGCTGTTGGACTTGTACGACC
Found at i:107787 original size:20 final size:20
Alignment explanation
Indices: 107762--107826 Score: 103
Period size: 20 Copynumber: 3.2 Consensus size: 20
107752 GTAGCTAAAA
107762 ACCACCCAATCTCCATCCCC
1 ACCACCCAATCTCCATCCCC
*
107782 ACCACCCAGTCTCCATCCCC
1 ACCACCCAATCTCCATCCCC
* *
107802 ACCACCTAATCTACATCCCC
1 ACCACCCAATCTCCATCCCC
107822 ACCAC
1 ACCAC
107827 TCATCCACCA
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.26, C:0.57, G:0.02, T:0.15
Consensus pattern (20 bp):
ACCACCCAATCTCCATCCCC
Left flanking sequence: Indices 107262 -- 107761
ATCGGGCATCTGGGTGCGGCCAGGGGGCGTTTGCACGGGTGGAAGTTTGACAGGACAAGGCCTGG
GCGATGATTTAGCTGCAAACTGCCACAAAGTGGGATTGCGTCATGGACGACCAGGAATGCGAGAT
AGGGGCCAAATTGGAGGACAATTAGAGGACAAGTTGGAGGGCGAGTTTGTAGGGGGGCTTCTAGC
TATGGGAAGGAAGGGGAAGGGTGGTTAATCCTTTATTATCAGACGCTCGATTAGCGACGGGTGGC
TCTGACGTATGGTTTACAGTATGCACCCTGCGAACTAGCCGCCAACTACGCAGTCACCATAGTCG
CCACTCAGACAGTAGCGAGACCCACCAATCAGTCAGTACCGAGACCCACCAATCAGACCCAGACC
CAGACCAACCACCCAAACCCAGACCCAGACTCAAATCGAGACCCGCACCACTGTAGCTACACACC
ACCGTAGCTAAACACCACCGTAGCTAAACACCACTGTAGCTAAAA
Right flanking sequence: Indices 107827 -- 108326
TCATCCACCATCTCCACTTATCACCATCCCTACCCTCTCCACTTATCCACCACCCTCTCCATCTC
CACCCCACCACCCTCTTCATCCCACCACCCTCTCCATCTCCTCCACCCCACCACTCTCTCACCCC
TTTCCCCCTCCTCCTTCCCCCTCCTCGGACTTGGGTTTGCAGCCCGACCCGTGCGGCGCGCACCG
CACTTTTCCACCCAAATTGCTACCAGTTGCCACCAACGAAATATCTCAAAATGTCTAGTGCCATG
CAAGTGGATAGCCCCGAGATCGACGAAGGGCTCTACTCGCGTCAATTGTATGTGCTCGGCAAGGA
GGCCATGCTCAAAATGCAGGCGGCCAACGTGCTCGTGGTGGGGCTCAAGGGCCTCGGAGTCGAGA
TCGCCAAGAACGTGGCCCTCGCCGGAGTCAAGCTGTTGGACTTGTACGACCCGCTGACGGTGTCG
GTGGGCGACTTGAGCGCCCAGTTTTTCTTGTCCGAGGACGATGTC
Found at i:107838 original size:20 final size:20
Alignment explanation
Indices: 107774--107843 Score: 63
Period size: 20 Copynumber: 3.5 Consensus size: 20
107764 CACCCAATCT
* *
107774 CCATCCCCACCACCCAGT-CT
1 CCATCCCCACCACTCA-TCCA
* *
107794 CCATCCCCACCACCTAATCTA
1 CCATCCCCACCA-CTCATCCA
107815 -CATCCCCACCACTCATCCA
1 CCATCCCCACCACTCATCCA
*
107834 CCATCTCCAC
1 CCATCCCCAC
107844 TTATCACCAT
Statistics
Matches: 40, Mismatches: 7, Indels: 6
0.75 0.13 0.11
Matches are distributed among these distances:
19 6 0.15
20 32 0.80
21 2 0.05
ACGTcount: A:0.24, C:0.57, G:0.01, T:0.17
Consensus pattern (20 bp):
CCATCCCCACCACTCATCCA
Left flanking sequence: Indices 107274 -- 107773
GGTGCGGCCAGGGGGCGTTTGCACGGGTGGAAGTTTGACAGGACAAGGCCTGGGCGATGATTTAG
CTGCAAACTGCCACAAAGTGGGATTGCGTCATGGACGACCAGGAATGCGAGATAGGGGCCAAATT
GGAGGACAATTAGAGGACAAGTTGGAGGGCGAGTTTGTAGGGGGGCTTCTAGCTATGGGAAGGAA
GGGGAAGGGTGGTTAATCCTTTATTATCAGACGCTCGATTAGCGACGGGTGGCTCTGACGTATGG
TTTACAGTATGCACCCTGCGAACTAGCCGCCAACTACGCAGTCACCATAGTCGCCACTCAGACAG
TAGCGAGACCCACCAATCAGTCAGTACCGAGACCCACCAATCAGACCCAGACCCAGACCAACCAC
CCAAACCCAGACCCAGACTCAAATCGAGACCCGCACCACTGTAGCTACACACCACCGTAGCTAAA
CACCACCGTAGCTAAACACCACTGTAGCTAAAAACCACCCAATCT
Right flanking sequence: Indices 107844 -- 108343
TTATCACCATCCCTACCCTCTCCACTTATCCACCACCCTCTCCATCTCCACCCCACCACCCTCTT
CATCCCACCACCCTCTCCATCTCCTCCACCCCACCACTCTCTCACCCCTTTCCCCCTCCTCCTTC
CCCCTCCTCGGACTTGGGTTTGCAGCCCGACCCGTGCGGCGCGCACCGCACTTTTCCACCCAAAT
TGCTACCAGTTGCCACCAACGAAATATCTCAAAATGTCTAGTGCCATGCAAGTGGATAGCCCCGA
GATCGACGAAGGGCTCTACTCGCGTCAATTGTATGTGCTCGGCAAGGAGGCCATGCTCAAAATGC
AGGCGGCCAACGTGCTCGTGGTGGGGCTCAAGGGCCTCGGAGTCGAGATCGCCAAGAACGTGGCC
CTCGCCGGAGTCAAGCTGTTGGACTTGTACGACCCGCTGACGGTGTCGGTGGGCGACTTGAGCGC
CCAGTTTTTCTTGTCCGAGGACGATGTCGGCTCCACCACCCGCGC
Found at i:107838 original size:40 final size:40
Alignment explanation
Indices: 107762--107843 Score: 103
Period size: 40 Copynumber: 2.0 Consensus size: 40
107752 GTAGCTAAAA
* *
107762 ACCACCCAATCTCCATCCCCACCACCCAGTCTCCATCCCC
1 ACCACCCAATCTACATCCCCACCACCCAGTCACCATCCCC
* * *
107802 ACCACCTAATCTACATCCCCACCACTCA-TCCACCATCTCC
1 ACCACCCAATCTACATCCCCACCACCCAGT-CACCATCCCC
107842 AC
1 AC
107844 TTATCACCAT
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
39 1 0.03
40 35 0.97
ACGTcount: A:0.26, C:0.56, G:0.01, T:0.17
Consensus pattern (40 bp):
ACCACCCAATCTACATCCCCACCACCCAGTCACCATCCCC
Left flanking sequence: Indices 107262 -- 107761
ATCGGGCATCTGGGTGCGGCCAGGGGGCGTTTGCACGGGTGGAAGTTTGACAGGACAAGGCCTGG
GCGATGATTTAGCTGCAAACTGCCACAAAGTGGGATTGCGTCATGGACGACCAGGAATGCGAGAT
AGGGGCCAAATTGGAGGACAATTAGAGGACAAGTTGGAGGGCGAGTTTGTAGGGGGGCTTCTAGC
TATGGGAAGGAAGGGGAAGGGTGGTTAATCCTTTATTATCAGACGCTCGATTAGCGACGGGTGGC
TCTGACGTATGGTTTACAGTATGCACCCTGCGAACTAGCCGCCAACTACGCAGTCACCATAGTCG
CCACTCAGACAGTAGCGAGACCCACCAATCAGTCAGTACCGAGACCCACCAATCAGACCCAGACC
CAGACCAACCACCCAAACCCAGACCCAGACTCAAATCGAGACCCGCACCACTGTAGCTACACACC
ACCGTAGCTAAACACCACCGTAGCTAAACACCACTGTAGCTAAAA
Right flanking sequence: Indices 107844 -- 108343
TTATCACCATCCCTACCCTCTCCACTTATCCACCACCCTCTCCATCTCCACCCCACCACCCTCTT
CATCCCACCACCCTCTCCATCTCCTCCACCCCACCACTCTCTCACCCCTTTCCCCCTCCTCCTTC
CCCCTCCTCGGACTTGGGTTTGCAGCCCGACCCGTGCGGCGCGCACCGCACTTTTCCACCCAAAT
TGCTACCAGTTGCCACCAACGAAATATCTCAAAATGTCTAGTGCCATGCAAGTGGATAGCCCCGA
GATCGACGAAGGGCTCTACTCGCGTCAATTGTATGTGCTCGGCAAGGAGGCCATGCTCAAAATGC
AGGCGGCCAACGTGCTCGTGGTGGGGCTCAAGGGCCTCGGAGTCGAGATCGCCAAGAACGTGGCC
CTCGCCGGAGTCAAGCTGTTGGACTTGTACGACCCGCTGACGGTGTCGGTGGGCGACTTGAGCGC
CCAGTTTTTCTTGTCCGAGGACGATGTCGGCTCCACCACCCGCGC
Found at i:107891 original size:26 final size:26
Alignment explanation
Indices: 107834--107894 Score: 83
Period size: 25 Copynumber: 2.4 Consensus size: 26
107824 CACTCATCCA
107834 CCATCTCCACTTATCACCATCCCTAC
1 CCATCTCCACTTATCACCATCCCTAC
107860 CC-TCTCCACTTATCCACCA-CCCT-C
1 CCATCTCCACTTAT-CACCATCCCTAC
107884 TCCATCTCCAC
1 -CCATCTCCAC
107895 CCCACCACCC
Statistics
Matches: 32, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
24 1 0.03
25 17 0.53
26 14 0.44
ACGTcount: A:0.20, C:0.54, G:0.00, T:0.26
Consensus pattern (26 bp):
CCATCTCCACTTATCACCATCCCTAC
Left flanking sequence: Indices 107334 -- 107833
TTTAGCTGCAAACTGCCACAAAGTGGGATTGCGTCATGGACGACCAGGAATGCGAGATAGGGGCC
AAATTGGAGGACAATTAGAGGACAAGTTGGAGGGCGAGTTTGTAGGGGGGCTTCTAGCTATGGGA
AGGAAGGGGAAGGGTGGTTAATCCTTTATTATCAGACGCTCGATTAGCGACGGGTGGCTCTGACG
TATGGTTTACAGTATGCACCCTGCGAACTAGCCGCCAACTACGCAGTCACCATAGTCGCCACTCA
GACAGTAGCGAGACCCACCAATCAGTCAGTACCGAGACCCACCAATCAGACCCAGACCCAGACCA
ACCACCCAAACCCAGACCCAGACTCAAATCGAGACCCGCACCACTGTAGCTACACACCACCGTAG
CTAAACACCACCGTAGCTAAACACCACTGTAGCTAAAAACCACCCAATCTCCATCCCCACCACCC
AGTCTCCATCCCCACCACCTAATCTACATCCCCACCACTCATCCA
Right flanking sequence: Indices 107895 -- 108394
CCCACCACCCTCTTCATCCCACCACCCTCTCCATCTCCTCCACCCCACCACTCTCTCACCCCTTT
CCCCCTCCTCCTTCCCCCTCCTCGGACTTGGGTTTGCAGCCCGACCCGTGCGGCGCGCACCGCAC
TTTTCCACCCAAATTGCTACCAGTTGCCACCAACGAAATATCTCAAAATGTCTAGTGCCATGCAA
GTGGATAGCCCCGAGATCGACGAAGGGCTCTACTCGCGTCAATTGTATGTGCTCGGCAAGGAGGC
CATGCTCAAAATGCAGGCGGCCAACGTGCTCGTGGTGGGGCTCAAGGGCCTCGGAGTCGAGATCG
CCAAGAACGTGGCCCTCGCCGGAGTCAAGCTGTTGGACTTGTACGACCCGCTGACGGTGTCGGTG
GGCGACTTGAGCGCCCAGTTTTTCTTGTCCGAGGACGATGTCGGCTCCACCACCCGCGCAGCCGC
CACCCGGCCCCGCTTGGCCGAGCTCAACGCCTACGTGCCCATTGG
Found at i:107903 original size:23 final size:22
Alignment explanation
Indices: 107873--107951 Score: 74
Period size: 23 Copynumber: 3.6 Consensus size: 22
107863 CTCCACTTAT
107873 CCACCACCCTCTCCATCTCCACC
1 CCACCACCCTCTCCATC-CCACC
*
107896 CCACCACCCTCTTCATCCCACC
1 CCACCACCCTCTCCATCCCACC
* *
107918 ACC-CTCTCCATCTCC-T-CCACC
1 -CCAC-CACCCTCTCCATCCCACC
*
107939 CCACCACTCTCTC
1 CCACCACCCTCTC
107952 ACCCCTTTCC
Statistics
Matches: 46, Mismatches: 7, Indels: 9
0.74 0.11 0.15
Matches are distributed among these distances:
20 8 0.17
21 6 0.13
22 7 0.15
23 25 0.54
ACGTcount: A:0.16, C:0.63, G:0.00, T:0.20
Consensus pattern (22 bp):
CCACCACCCTCTCCATCCCACC
Left flanking sequence: Indices 107373 -- 107872
ACGACCAGGAATGCGAGATAGGGGCCAAATTGGAGGACAATTAGAGGACAAGTTGGAGGGCGAGT
TTGTAGGGGGGCTTCTAGCTATGGGAAGGAAGGGGAAGGGTGGTTAATCCTTTATTATCAGACGC
TCGATTAGCGACGGGTGGCTCTGACGTATGGTTTACAGTATGCACCCTGCGAACTAGCCGCCAAC
TACGCAGTCACCATAGTCGCCACTCAGACAGTAGCGAGACCCACCAATCAGTCAGTACCGAGACC
CACCAATCAGACCCAGACCCAGACCAACCACCCAAACCCAGACCCAGACTCAAATCGAGACCCGC
ACCACTGTAGCTACACACCACCGTAGCTAAACACCACCGTAGCTAAACACCACTGTAGCTAAAAA
CCACCCAATCTCCATCCCCACCACCCAGTCTCCATCCCCACCACCTAATCTACATCCCCACCACT
CATCCACCATCTCCACTTATCACCATCCCTACCCTCTCCACTTAT
Right flanking sequence: Indices 107952 -- 108451
ACCCCTTTCCCCCTCCTCCTTCCCCCTCCTCGGACTTGGGTTTGCAGCCCGACCCGTGCGGCGCG
CACCGCACTTTTCCACCCAAATTGCTACCAGTTGCCACCAACGAAATATCTCAAAATGTCTAGTG
CCATGCAAGTGGATAGCCCCGAGATCGACGAAGGGCTCTACTCGCGTCAATTGTATGTGCTCGGC
AAGGAGGCCATGCTCAAAATGCAGGCGGCCAACGTGCTCGTGGTGGGGCTCAAGGGCCTCGGAGT
CGAGATCGCCAAGAACGTGGCCCTCGCCGGAGTCAAGCTGTTGGACTTGTACGACCCGCTGACGG
TGTCGGTGGGCGACTTGAGCGCCCAGTTTTTCTTGTCCGAGGACGATGTCGGCTCCACCACCCGC
GCAGCCGCCACCCGGCCCCGCTTGGCCGAGCTCAACGCCTACGTGCCCATTGGCGAGGCCCCCGA
CTTGCTGGAGGAGACCCTTGGCCGCTACAAGTGCGTGGTCATCAC
Found at i:107917 original size:17 final size:17
Alignment explanation
Indices: 107888--107939 Score: 68
Period size: 17 Copynumber: 3.0 Consensus size: 17
107878 ACCCTCTCCA
*
107888 TCTCCACCCCACCACCC
1 TCTCCATCCCACCACCC
*
107905 TCTTCATCCCACCACCC
1 TCTCCATCCCACCACCC
*
107922 TCTCCATCTCCTCCACCC
1 TCTCCATC-CCACCACCC
107940 CACCACTCTC
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
17 22 0.73
18 8 0.27
ACGTcount: A:0.15, C:0.63, G:0.00, T:0.21
Consensus pattern (17 bp):
TCTCCATCCCACCACCC
Left flanking sequence: Indices 107388 -- 107887
AGATAGGGGCCAAATTGGAGGACAATTAGAGGACAAGTTGGAGGGCGAGTTTGTAGGGGGGCTTC
TAGCTATGGGAAGGAAGGGGAAGGGTGGTTAATCCTTTATTATCAGACGCTCGATTAGCGACGGG
TGGCTCTGACGTATGGTTTACAGTATGCACCCTGCGAACTAGCCGCCAACTACGCAGTCACCATA
GTCGCCACTCAGACAGTAGCGAGACCCACCAATCAGTCAGTACCGAGACCCACCAATCAGACCCA
GACCCAGACCAACCACCCAAACCCAGACCCAGACTCAAATCGAGACCCGCACCACTGTAGCTACA
CACCACCGTAGCTAAACACCACCGTAGCTAAACACCACTGTAGCTAAAAACCACCCAATCTCCAT
CCCCACCACCCAGTCTCCATCCCCACCACCTAATCTACATCCCCACCACTCATCCACCATCTCCA
CTTATCACCATCCCTACCCTCTCCACTTATCCACCACCCTCTCCA
Right flanking sequence: Indices 107940 -- 108439
CACCACTCTCTCACCCCTTTCCCCCTCCTCCTTCCCCCTCCTCGGACTTGGGTTTGCAGCCCGAC
CCGTGCGGCGCGCACCGCACTTTTCCACCCAAATTGCTACCAGTTGCCACCAACGAAATATCTCA
AAATGTCTAGTGCCATGCAAGTGGATAGCCCCGAGATCGACGAAGGGCTCTACTCGCGTCAATTG
TATGTGCTCGGCAAGGAGGCCATGCTCAAAATGCAGGCGGCCAACGTGCTCGTGGTGGGGCTCAA
GGGCCTCGGAGTCGAGATCGCCAAGAACGTGGCCCTCGCCGGAGTCAAGCTGTTGGACTTGTACG
ACCCGCTGACGGTGTCGGTGGGCGACTTGAGCGCCCAGTTTTTCTTGTCCGAGGACGATGTCGGC
TCCACCACCCGCGCAGCCGCCACCCGGCCCCGCTTGGCCGAGCTCAACGCCTACGTGCCCATTGG
CGAGGCCCCCGACTTGCTGGAGGAGACCCTTGGCCGCTACAAGTG
Found at i:107977 original size:14 final size:13
Alignment explanation
Indices: 107958--107982 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
107948 TCTCACCCCT
107958 TTCCCCCTCCTCC
1 TTCCCCCTCCTCC
107971 TTCCCCCTCCTC
1 TTCCCCCTCCTC
107983 GGACTTGGGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.00, C:0.68, G:0.00, T:0.32
Consensus pattern (13 bp):
TTCCCCCTCCTCC
Left flanking sequence: Indices 107458 -- 107957
ATGGGAAGGAAGGGGAAGGGTGGTTAATCCTTTATTATCAGACGCTCGATTAGCGACGGGTGGCT
CTGACGTATGGTTTACAGTATGCACCCTGCGAACTAGCCGCCAACTACGCAGTCACCATAGTCGC
CACTCAGACAGTAGCGAGACCCACCAATCAGTCAGTACCGAGACCCACCAATCAGACCCAGACCC
AGACCAACCACCCAAACCCAGACCCAGACTCAAATCGAGACCCGCACCACTGTAGCTACACACCA
CCGTAGCTAAACACCACCGTAGCTAAACACCACTGTAGCTAAAAACCACCCAATCTCCATCCCCA
CCACCCAGTCTCCATCCCCACCACCTAATCTACATCCCCACCACTCATCCACCATCTCCACTTAT
CACCATCCCTACCCTCTCCACTTATCCACCACCCTCTCCATCTCCACCCCACCACCCTCTTCATC
CCACCACCCTCTCCATCTCCTCCACCCCACCACTCTCTCACCCCT
Right flanking sequence: Indices 107983 -- 108482
GGACTTGGGTTTGCAGCCCGACCCGTGCGGCGCGCACCGCACTTTTCCACCCAAATTGCTACCAG
TTGCCACCAACGAAATATCTCAAAATGTCTAGTGCCATGCAAGTGGATAGCCCCGAGATCGACGA
AGGGCTCTACTCGCGTCAATTGTATGTGCTCGGCAAGGAGGCCATGCTCAAAATGCAGGCGGCCA
ACGTGCTCGTGGTGGGGCTCAAGGGCCTCGGAGTCGAGATCGCCAAGAACGTGGCCCTCGCCGGA
GTCAAGCTGTTGGACTTGTACGACCCGCTGACGGTGTCGGTGGGCGACTTGAGCGCCCAGTTTTT
CTTGTCCGAGGACGATGTCGGCTCCACCACCCGCGCAGCCGCCACCCGGCCCCGCTTGGCCGAGC
TCAACGCCTACGTGCCCATTGGCGAGGCCCCCGACTTGCTGGAGGAGACCCTTGGCCGCTACAAG
TGCGTGGTCATCACCGAGGGGGTGCTGCTTGCCGAGGCCGTGCGC
Found at i:109052 original size:12 final size:12
Alignment explanation
Indices: 109037--109062 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
109027 AGCAGGTGTT
109037 GGAGCTTGCCGA
1 GGAGCTTGCCGA
109049 GGAGCTTGCCGA
1 GGAGCTTGCCGA
109061 GG
1 GG
109063 GCCACGTGAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.15, C:0.23, G:0.46, T:0.15
Consensus pattern (12 bp):
GGAGCTTGCCGA
Left flanking sequence: Indices 108537 -- 109036
GGGCTTTTTGGCCAGTTGTTTGTAGACTTTGGCGCCAAGTTCACCATCGTCGACCAGACGGGCGA
GGAGCCCAAGACAGGCTTGGTGTCGGACGTGGAGACCGACTCGGGCACCGTGCTGACCCTCGGCG
ACGACGCGCGCCACGGGCTCGAGGACGGCGACTACGTCAAGTTCACCGAGATCGAGGGGGTGCCC
GAGCTCAACAGCGGCGAGCCGTACCGGGTGACGGTGTTGGGCCCCTACGCGTTCAAGATCGACGT
GGCCGACAAGTCCGCCAAATACGTCAAAGGCGGCATCTGGACCCAGGTCAAAATGCCCAAGGAGG
TCCAGTTCGAGCTGATGGAGGAGCAGATGCGCGACCCCGCTTACGTCATCAGCGACTTTGCCAAG
ATGGAGCGCCCGGCCCAGTTGCACGTGGGCTTCCAGGCGCTCGACGCGTTCGAGCAGAAGCACTC
GCGGTTGCCGCACCCCCACAACGCCGACGACGCCGAGCAGGTGTT
Right flanking sequence: Indices 109063 -- 109562
GCCACGTGACCCTGGTGGACAAGGCTTTGATCAAGGAGTTGGCGTTTGAGGCCCGCGGCGAGTTG
CCGGCGATGTGCGCGTTCTACGGCGGGCTCATTGCCCAGGAGGTGCTCAAGAACGTGCTGTCCAA
GTTTGGCCCGGTGATGCAGTGGCTCTACTTTGACCTGTTGGAGCTGTTGCCCGACCACACCCAGT
TCCCGCGCACCGCCGCCACCACGGCGCCGCGCCAGCTGCGGTACGACGCCCAGGTGGCGGTGTTT
GGCCAGGCGTTCCACGACAAGCTCGCCAACTTGCGGGTGTTCCTCGTGGGCAGCGGCGCCATCGG
GTGCGAGATGCTCAAGAACTGGGCGATGATGGGGCTCGGGCTGGGTGCTGACGGGCGCATCACCG
TCACCGACAACGACCTGATCGAGAAGCTGAACCTCAACCGCCAGTTTTTGTTCCGCCCGAAGGAC
GTGGGCAAGAACAAGCTGGAGGTGGCGGCTGCCGCCGTTGCCGCG
Found at i:114633 original size:12 final size:13
Alignment explanation
Indices: 114593--114635 Score: 61
Period size: 13 Copynumber: 3.4 Consensus size: 13
114583 TAATGATAAT
114593 GGTTGTTTGAAGA
1 GGTTGTTTGAAGA
* *
114606 GATTGTTTGGAGA
1 GGTTGTTTGAAGA
114619 GGTTG-TTGAAGA
1 GGTTGTTTGAAGA
114631 GGTTG
1 GGTTG
114636 AATTGTTGCG
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
12 11 0.42
13 15 0.58
ACGTcount: A:0.21, C:0.00, G:0.42, T:0.37
Consensus pattern (13 bp):
GGTTGTTTGAAGA
Left flanking sequence: Indices 114093 -- 114592
CAACCACAATCCAACCACCAACACTTGGAGATCCCCACCCATGAGACTGGCCACACCCACGCAAT
TCTCGCCAAACACCCACTTTTCACTTCCCTCGCCTTAAGCCCGACTACCCCACCGCGCGCACCGC
ACCAACCAAAACCTACAATTTACTAAGCACCACCCCAGATGTTCCGTCGATTGCTTGTGCCCACC
TCGCGAACCTCGGTGCGGTTCAACTCGGGCGTCCCCATGGACAGCTACGAGCAGAAGATCTACGA
CATGCTCAAGTCCCACTTCACGCCGCAGAAGTTGATGGTCAAGGATGTGTCCGGGGGCTGTGGAT
CGATGTTTGCCATCGAGGTTGAGAGCGACCTGTTCAAGGGAATTCCTATGATTAAGCAGCACCGG
TTGGTGAACCAGTTGTTGAAGGACGAGATCTCTCAGTGGCACGGGTTGCAGCTTAAGACCAAGGC
GCCGTGATCTTGGTGACAAATGTACATAGGTAATCTAATGATAAT
Right flanking sequence: Indices 114636 -- 115135
AATTGTTGCGGTGACAATGAAGAGGAGGTTGACAGTTGAGCCTGACGCGTTCGAAAAGTGTCAGG
GTGTACCACCTTCGCACTTGCTTGTATGGCTGATTGTATTTCTATAGTTGATTTGGTTAGTGAAT
CAATACAGTTTAGACCAGCCAGGGCACACACAACTCCGATTTACTTCAGGTAATAGCTAAAGGTC
CACTTCGATACACATTCTTCACCAAGCACTGATTCATCACAACCTACCAAATAGCATATATTCAG
TTGGACCACCATGCCAACCAATACCTGAATTACTTGTATCAAGCAAAACTACAAACAGAGTGTGT
CTCAAACCTATAACGCACGTCTCCACATCATGTCTCCACGTCTTATCTCTCTTTTCTCTCTTGTC
TCTTGTCTCTCGTCTCTTGTCACCTTCCCGTCTGCCTCCACCCTGCGTGCAGTCCAGCGATGCGC
ATACCATGCGATGCACATCGATAAAACCCTTGACACAGACCACCA
Found at i:115027 original size:7 final size:7
Alignment explanation
Indices: 115017--115046 Score: 51
Period size: 7 Copynumber: 4.3 Consensus size: 7
115007 CTCTCTTTTC
115017 TCTCTTG
1 TCTCTTG
115024 TCTCTTG
1 TCTCTTG
*
115031 TCTCTCG
1 TCTCTTG
115038 TCTCTTG
1 TCTCTTG
115045 TC
1 TC
115047 ACCTTCCCGT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.00, C:0.33, G:0.13, T:0.53
Consensus pattern (7 bp):
TCTCTTG
Left flanking sequence: Indices 114517 -- 115016
AGTGGCACGGGTTGCAGCTTAAGACCAAGGCGCCGTGATCTTGGTGACAAATGTACATAGGTAAT
CTAATGATAATGGTTGTTTGAAGAGATTGTTTGGAGAGGTTGTTGAAGAGGTTGAATTGTTGCGG
TGACAATGAAGAGGAGGTTGACAGTTGAGCCTGACGCGTTCGAAAAGTGTCAGGGTGTACCACCT
TCGCACTTGCTTGTATGGCTGATTGTATTTCTATAGTTGATTTGGTTAGTGAATCAATACAGTTT
AGACCAGCCAGGGCACACACAACTCCGATTTACTTCAGGTAATAGCTAAAGGTCCACTTCGATAC
ACATTCTTCACCAAGCACTGATTCATCACAACCTACCAAATAGCATATATTCAGTTGGACCACCA
TGCCAACCAATACCTGAATTACTTGTATCAAGCAAAACTACAAACAGAGTGTGTCTCAAACCTAT
AACGCACGTCTCCACATCATGTCTCCACGTCTTATCTCTCTTTTC
Right flanking sequence: Indices 115047 -- 115546
ACCTTCCCGTCTGCCTCCACCCTGCGTGCAGTCCAGCGATGCGCATACCATGCGATGCACATCGA
TAAAACCCTTGACACAGACCACCAATGTCGAGCAAGTTTGTGAAGCAGTTGGCGTCCAACGACAC
CAAGTCGCGGGAGAAGGCGTTGTCGTCGCTCCGCAAGTTTTTGGGGGCGAAACAGCAGTCCAAGC
TCCCGTTGTTGGAGCTTGAAAAGTTGTGGAGAGGGCTCTACTTCTCGATGTGGTACTGCGACAAG
CCGGGCCCCCAGCAGCAATTGGCCGAGGACTTGGGCAAGCTCTACTCCGAGCTGGTGCACGCCGA
TGCCGTGATCCGCTTCTACGAGGCGTTCTGGGTGATCATGATGAAGGAGTGGGCCCTGATCGACA
AGTGGAGAATCGACAAGTACCTCATGTTGATCAGACGGGTGGTGCGCCATGTGTTCATCTTCTTG
AACAAGCAGAAGTGGGACGACAAGTTTGTCCAGGAGTTCATCGCC
Found at i:125338 original size:19 final size:20
Alignment explanation
Indices: 125314--125351 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
125304 TTTTCGTAAT
125314 TGGAT-GGTTAGATACAGAC
1 TGGATGGGTTAGATACAGAC
*
125333 TGGATGGGTTAGTTACAGA
1 TGGATGGGTTAGATACAGA
125352 ATGGGTTCGA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 5 0.29
20 12 0.71
ACGTcount: A:0.29, C:0.08, G:0.34, T:0.29
Consensus pattern (20 bp):
TGGATGGGTTAGATACAGAC
Left flanking sequence: Indices 124814 -- 125313
CGAGAACTTGAACGAGAAGATCCGCGACGAGATCGCCTCCCTGGACATTTTCCGGTTCGACTGGT
ACTTTTTACTGCGGCTGCCGCAGGAGATTGGCCGGCGGATCAACACTTTACTACTTGCACTTCTG
CGCGAGGTGGAAGGCCCTCCCAAAAAGAAGGGCAAAAAGGAGCTGACGGCGCTGCGAGTGGGGCT
GATGGAGCCACTGAAGCGCACCCCTGAAGACGACGAACGCTTGCTCAAGAAGATCAAGGTCGAGG
TCAAGCAGGAAGCATAATAGCATATTTTAACGTTAATGAACATGTATGATACTTTAAACCCAGCT
GGCTGCGCTCCTATTTTGGTTACACTTTACCACAAATGCATATTGTGTCATTTCTTTTTTTTCTT
GTCACGGTTGCAAACTGGTGGTGCATGAAATCAGTTCATCATCATGCCCGATCGGGTAAACACGT
AGCCCCACGGATGGTTGCTCGTGGCCTTACGGTGCTTTTCGTAAT
Right flanking sequence: Indices 125352 -- 125851
ATGGGTTCGAGGTACTCGGGCAAGATGGTCTCCTCGACAGTGGATATATAGTATGGGACCTTGTT
GGCGGTCCATGACACCGACATGAAGTCGGACATTTCGTGCTTCTCGACGCGGAGGCGGTCAAAAA
TAGAGTCCCCTGAGAATCTATACCGTGGGGGGACGAAATTGCGCAAACTGATGATTTTTGTGCCG
GTGCGCAACCCGTAGAGAAGGCGGCCCACCTCGGCGTTAAGGTTGACGTCGAACAAGTAGTTGTT
GACAATGATGACCTCGCAGTCGAGACACGCGGCCTTGACGGGCGGGTTGTCGACAAACGACTGCG
AGAGCGCAAAGTTGAGGTTGAGGGGCCGGAGCCCGAACAACGCCAAGTGGCGGCTCAAAAGCGCC
TCCTGCAACGCAGTAAGCTTCAGTGCGTGTTCCATGAGCTCGCAGCCGCCGGCCATGGCGGCGCC
AAACTCGAGCGCGGCCTGGAAGGTGGTGTTGCCCACGCCCGAGCC
Found at i:126182 original size:12 final size:12
Alignment explanation
Indices: 126147--126274 Score: 75
Period size: 12 Copynumber: 10.9 Consensus size: 12
126137 GTGCTTGGGC
126147 GAGTGGCCATTG
1 GAGTGGCCATTG
* *
126159 GGGTGG---TCG
1 GAGTGGCCATTG
126168 GAGTGGCCATTG
1 GAGTGGCCATTG
126180 GAGTGGCCATTG
1 GAGTGGCCATTG
* **
126192 GGGTGGTTATTG
1 GAGTGGCCATTG
**
126204 GAGTGGTTATTG
1 GAGTGGCCATTG
**
126216 GAGTGGTTATTG
1 GAGTGGCCATTG
126228 GCA-TGGCCATTG
1 G-AGTGGCCATTG
* * *
126240 GCGTTGCCATTA
1 GAGTGGCCATTG
* * *
126252 GCGTTGCCATTA
1 GAGTGGCCATTG
*
126264 GCGTGGCCATT
1 GAGTGGCCATT
126275 CAATTGGTTA
Statistics
Matches: 97, Mismatches: 14, Indels: 10
0.80 0.12 0.08
Matches are distributed among these distances:
9 7 0.07
12 89 0.92
13 1 0.01
ACGTcount: A:0.14, C:0.15, G:0.40, T:0.31
Consensus pattern (12 bp):
GAGTGGCCATTG
Left flanking sequence: Indices 125647 -- 126146
TGACGGGCGGGTTGTCGACAAACGACTGCGAGAGCGCAAAGTTGAGGTTGAGGGGCCGGAGCCCG
AACAACGCCAAGTGGCGGCTCAAAAGCGCCTCCTGCAACGCAGTAAGCTTCAGTGCGTGTTCCAT
GAGCTCGCAGCCGCCGGCCATGGCGGCGCCAAACTCGAGCGCGGCCTGGAAGGTGGTGTTGCCCA
CGCCCGAGCCCAAGTCGTAGAACTTTTGGTTGGGGCGCAACCCCACTTTTTCGAGCACCTCTGAG
GTGAACGACGGGAGGAGCTCGCCGTACACCTCGGCGGTGAACGACTTGTAGGCACGGAGCTTGCG
TGAGTTGGTCAGCACCACGCGGGCGTACACCCGGAGGAGGATCTGTTGCAGGACGAACCGCGAGA
GCGAGGTTTTCAGCTGGAGGCGGTGGAAGAGCGCTGTGTAGAAGTCGTCGGGGAGGTCGATGACC
TCGGAGTCCACCACGTTGGTTGGCTCTGCGACCCCGTGCTTGGGC
Right flanking sequence: Indices 126275 -- 126774
CAATTGGTTAGACCCATCCAAATGATTAGACCCGTTCAATTCAGATCCTTTAACTTGGCCAGACC
CCTTCAGTTCTTCAGACCCCTCCCACTGCACCCGCCCGTACGCAGGCGACAACGCCTCGCCCACC
ACGTCCGCGTACCACATCTCCAACACAAGCTCGCCCGCCGTCAACGGCGGCGCCTCCACCGCCGC
ACAGTACAACCGCTTGAGCTCGCGGTTCAAGTCCGCGTCGCCCCGGGCGTGGATCGCGTGCACCT
CGGCCCGGTTGGGCGACATCACCAACATCAACGCGTTCCAGGTGTCGATCACCCGCACGAACCAC
GCCATGTCCAGCGCCTCCACCGCGTTCTCCAACAGCTGGCAGAACCCCATCACCTCGTACTGGAT
CCGCGCACACCCCTCAAAGTACAACCCGCAGTGGATCTGCATCAACTTGACGATCTCGTACACGG
GGTCCAACTCGTTCAGCTTGGGCTGGCACAACACAAACAGCTCGT
Found at i:126203 original size:24 final size:24
Alignment explanation
Indices: 126167--126240 Score: 87
Period size: 24 Copynumber: 3.1 Consensus size: 24
126157 TGGGGTGGTC
**
126167 GGAGTGGCCATTGGAGTGGCCATT
1 GGAGTGGTTATTGGAGTGGCCATT
* **
126191 GGGGTGGTTATTGGAGTGGTTATT
1 GGAGTGGTTATTGGAGTGGCCATT
126215 GGAGTGGTTATTGGCA-TGGCCATT
1 GGAGTGGTTATTGG-AGTGGCCATT
126239 GG
1 GG
126241 CGTTGCCATT
Statistics
Matches: 41, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
24 40 0.98
25 1 0.02
ACGTcount: A:0.15, C:0.09, G:0.43, T:0.32
Consensus pattern (24 bp):
GGAGTGGTTATTGGAGTGGCCATT
Left flanking sequence: Indices 125667 -- 126166
AACGACTGCGAGAGCGCAAAGTTGAGGTTGAGGGGCCGGAGCCCGAACAACGCCAAGTGGCGGCT
CAAAAGCGCCTCCTGCAACGCAGTAAGCTTCAGTGCGTGTTCCATGAGCTCGCAGCCGCCGGCCA
TGGCGGCGCCAAACTCGAGCGCGGCCTGGAAGGTGGTGTTGCCCACGCCCGAGCCCAAGTCGTAG
AACTTTTGGTTGGGGCGCAACCCCACTTTTTCGAGCACCTCTGAGGTGAACGACGGGAGGAGCTC
GCCGTACACCTCGGCGGTGAACGACTTGTAGGCACGGAGCTTGCGTGAGTTGGTCAGCACCACGC
GGGCGTACACCCGGAGGAGGATCTGTTGCAGGACGAACCGCGAGAGCGAGGTTTTCAGCTGGAGG
CGGTGGAAGAGCGCTGTGTAGAAGTCGTCGGGGAGGTCGATGACCTCGGAGTCCACCACGTTGGT
TGGCTCTGCGACCCCGTGCTTGGGCGAGTGGCCATTGGGGTGGTC
Right flanking sequence: Indices 126241 -- 126740
CGTTGCCATTAGCGTTGCCATTAGCGTGGCCATTCAATTGGTTAGACCCATCCAAATGATTAGAC
CCGTTCAATTCAGATCCTTTAACTTGGCCAGACCCCTTCAGTTCTTCAGACCCCTCCCACTGCAC
CCGCCCGTACGCAGGCGACAACGCCTCGCCCACCACGTCCGCGTACCACATCTCCAACACAAGCT
CGCCCGCCGTCAACGGCGGCGCCTCCACCGCCGCACAGTACAACCGCTTGAGCTCGCGGTTCAAG
TCCGCGTCGCCCCGGGCGTGGATCGCGTGCACCTCGGCCCGGTTGGGCGACATCACCAACATCAA
CGCGTTCCAGGTGTCGATCACCCGCACGAACCACGCCATGTCCAGCGCCTCCACCGCGTTCTCCA
ACAGCTGGCAGAACCCCATCACCTCGTACTGGATCCGCGCACACCCCTCAAAGTACAACCCGCAG
TGGATCTGCATCAACTTGACGATCTCGTACACGGGGTCCAACTCG
Found at i:128175 original size:12 final size:12
Alignment explanation
Indices: 128145--128198 Score: 72
Period size: 12 Copynumber: 4.5 Consensus size: 12
128135 GAGCTTCGGG
*
128145 TCCAGTCTCAGG
1 TCCAGTCTCAGC
** *
128157 TATAGTCTCTGC
1 TCCAGTCTCAGC
128169 TCCAGTCTCAGC
1 TCCAGTCTCAGC
128181 TCCAGTCTCAGC
1 TCCAGTCTCAGC
128193 TCCAGT
1 TCCAGT
128199 GGCTCCGGCT
Statistics
Matches: 35, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
12 35 1.00
ACGTcount: A:0.17, C:0.35, G:0.19, T:0.30
Consensus pattern (12 bp):
TCCAGTCTCAGC
Left flanking sequence: Indices 127645 -- 128144
GTCGCTCGCGCAGCAGCGGGGCGCCCGTGGCGAGTGCCAGCCACTTGGCCTCGTACACGAGCTCC
TCGGTGGCGTTTTTGAACCGCGGGCGCGGGCCACATACGAACTGGGTCTCGTGGAACCGCAGCTC
CAAGTACGGGCGCAGGCGGAACGGGAAGTGCGGCGCCAACGTGTCGAAGTCCACGCCCTGCTCCA
CCCCGCGCTTCATCACCACCTTCTCGCCGTAGGTGAAGTCGGGCTCGCCGTAGCGGGTGCGGGCC
ACCTCCACCAAGTCGGCCATGCGGTACTGGCGGTAGACGTCGCGCACGGCGGTGCGGGTCAAGTC
GTTTTTGAGGAGGTACTCGAGCGGTTCCGGGTCGAACTCGTCGTCCACGGGCTCGGGACGGGGTG
GAGACGCTGGGAGCGGCGGCACCTGCGACACTTTGTACACGGGTTTAGGCAGGTTGGGCTGTTGA
AGCATGGGTTTGGCCTGTTTGGGCTGTTTTTGCGCGAGCTTCGGG
Right flanking sequence: Indices 128199 -- 128698
GGCTCCGGCTCCAGTTTGACGGCCTGGCTCAGCAACACAATCGGGCTGGGCCTGGGAACGCCCGG
TTTCATCCGCAAGACAAAGGTTTTGCGCAGAGGGGCCCCTGTGAACCACAGCAGCTGGCGGGCCT
TTTCGAGCAAGTAGCCGGCGGCCTCGCCCTTGCGGACCTTGGGCCGCGCCAGAAGCCCCGCGAGC
TGCAACTGGCGGATCAACTCGATGCACTCGGCAAAGGTGTGCTTCGGAACGAAAAAGTGGAGCCG
GGTCCGGCTCGGCCACCGCTCGGGACAGTAGCGGTCGATGGTGACCACGGTGTCGATGTCCTGGG
CCAGCCACTGCCCGAGCTGGGCCCGCGCACGCTCCACCAACCCGTGGTCGTACCCGGCGATGTCT
CCGTCCTCGTTGAGCACGTCGTGGATGTCCGCGGGGGACTTGCTGGAGTAGACGGCGTAGAACAC
CGCGAACTGCTGGTAGGCCCAGTCACGCACCTCCGGGGGCACCAG
Found at i:129054 original size:10 final size:10
Alignment explanation
Indices: 129039--129078 Score: 53
Period size: 10 Copynumber: 4.0 Consensus size: 10
129029 TTGGCGGGTG
*
129039 TAGGGTGGTT
1 TAGGGTGGTA
*
129049 TAGGGTGGTG
1 TAGGGTGGTA
*
129059 TATGGTGGTA
1 TAGGGTGGTA
129069 TAGGGTGGTA
1 TAGGGTGGTA
129079 CTGTGGGTGA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
10 26 1.00
ACGTcount: A:0.15, C:0.00, G:0.50, T:0.35
Consensus pattern (10 bp):
TAGGGTGGTA
Left flanking sequence: Indices 128539 -- 129038
GCTGGGCCCGCGCACGCTCCACCAACCCGTGGTCGTACCCGGCGATGTCTCCGTCCTCGTTGAGC
ACGTCGTGGATGTCCGCGGGGGACTTGCTGGAGTAGACGGCGTAGAACACCGCGAACTGCTGGTA
GGCCCAGTCACGCACCTCCGGGGGCACCAGTGCCCACACCTGTTCTGTGGTGAGCATCTTGGCCT
CCATCTCGGCGAGGAGCGATGGCGGATCGTCCACGAGGTCTGCCACGGGGCGGGTGCCGGGGGGC
AGCACGTAGTGGGGCACCACCTCGTCCTTCTCGTCGGTCAGGTGGTCGGACGTGTCCGGGGTGAA
CCTTTCGGGGGACTGTTCCAACTTGGGGGAAAACACGTCCATCGTCCGTCAACCACCTTTTTCAC
CACGGCTTTTGTTTTGAATCGGATTACGCGCGCGCGTCCGACGTGATGGAAGCGAGGCGCGTGGG
TGGTGGGGGTGGGGTGTAGGGGACGTGTGAGGGGATTGGCGGGTG
Right flanking sequence: Indices 129079 -- 129578
CTGTGGGTGAGAGTGGGTGGTATAGGGTGAGAGTGGGGTGTGCTTAGTGGTTCACTGGTGTAGTG
ATTATTTGATCTTATCAGACGCGTGACAGGAAAAGAACCGGGCCTGTTGCTGTGGGCATTGGTCA
CGGTTGCGGAGTGGGAGGGGCGACATGAGGGGTAGGTCAAGGACGTCGGGTGGCCAAGGTTGTGG
AGGTATACAGGGGTAGGACCTTTTTGTGGGGAGGACCTTTTTGTGGGGAGGACCAAGTTGTGGGG
TAGCAACGTTGTGGAGGACCAAGTCGTGGGAAACCACTTTGTGGGGTAACCACGTACGGCAGAGC
CATGTCGTAGGGCACTAGCCATGATGGGTCACCACGTTGTGGGGTAGGACCATGTTGTAGGGATT
TAGCTGGTTGTATGGTGCTAGCCACGATGTAGGGTATTAGGGTTGTTTAGGGTACTAGCCATAGA
CCAGCCAATTGAATGGTCGTCAATTGTATGGTAATAGCCGGTTGT
Found at i:129060 original size:20 final size:20
Alignment explanation
Indices: 129035--129077 Score: 68
Period size: 20 Copynumber: 2.1 Consensus size: 20
129025 GGGATTGGCG
*
129035 GGTGTAGGGTGGTTTAGGGT
1 GGTGTAGGGTGGTATAGGGT
*
129055 GGTGTATGGTGGTATAGGGT
1 GGTGTAGGGTGGTATAGGGT
129075 GGT
1 GGT
129078 ACTGTGGGTG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.12, C:0.00, G:0.53, T:0.35
Consensus pattern (20 bp):
GGTGTAGGGTGGTATAGGGT
Left flanking sequence: Indices 128535 -- 129034
CCGAGCTGGGCCCGCGCACGCTCCACCAACCCGTGGTCGTACCCGGCGATGTCTCCGTCCTCGTT
GAGCACGTCGTGGATGTCCGCGGGGGACTTGCTGGAGTAGACGGCGTAGAACACCGCGAACTGCT
GGTAGGCCCAGTCACGCACCTCCGGGGGCACCAGTGCCCACACCTGTTCTGTGGTGAGCATCTTG
GCCTCCATCTCGGCGAGGAGCGATGGCGGATCGTCCACGAGGTCTGCCACGGGGCGGGTGCCGGG
GGGCAGCACGTAGTGGGGCACCACCTCGTCCTTCTCGTCGGTCAGGTGGTCGGACGTGTCCGGGG
TGAACCTTTCGGGGGACTGTTCCAACTTGGGGGAAAACACGTCCATCGTCCGTCAACCACCTTTT
TCACCACGGCTTTTGTTTTGAATCGGATTACGCGCGCGCGTCCGACGTGATGGAAGCGAGGCGCG
TGGGTGGTGGGGGTGGGGTGTAGGGGACGTGTGAGGGGATTGGCG
Right flanking sequence: Indices 129078 -- 129577
ACTGTGGGTGAGAGTGGGTGGTATAGGGTGAGAGTGGGGTGTGCTTAGTGGTTCACTGGTGTAGT
GATTATTTGATCTTATCAGACGCGTGACAGGAAAAGAACCGGGCCTGTTGCTGTGGGCATTGGTC
ACGGTTGCGGAGTGGGAGGGGCGACATGAGGGGTAGGTCAAGGACGTCGGGTGGCCAAGGTTGTG
GAGGTATACAGGGGTAGGACCTTTTTGTGGGGAGGACCTTTTTGTGGGGAGGACCAAGTTGTGGG
GTAGCAACGTTGTGGAGGACCAAGTCGTGGGAAACCACTTTGTGGGGTAACCACGTACGGCAGAG
CCATGTCGTAGGGCACTAGCCATGATGGGTCACCACGTTGTGGGGTAGGACCATGTTGTAGGGAT
TTAGCTGGTTGTATGGTGCTAGCCACGATGTAGGGTATTAGGGTTGTTTAGGGTACTAGCCATAG
ACCAGCCAATTGAATGGTCGTCAATTGTATGGTAATAGCCGGTTG
Found at i:129310 original size:17 final size:17
Alignment explanation
Indices: 129283--129327 Score: 81
Period size: 17 Copynumber: 2.6 Consensus size: 17
129273 GAGGTATACA
129283 GGGGTAGGACCTTTTTGT
1 GGGG-AGGACCTTTTTGT
129301 GGGGAGGACCTTTTTGT
1 GGGGAGGACCTTTTTGT
129318 GGGGAGGACC
1 GGGGAGGACC
129328 AAGTTGTGGG
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
17 23 0.85
18 4 0.15
ACGTcount: A:0.13, C:0.13, G:0.44, T:0.29
Consensus pattern (17 bp):
GGGGAGGACCTTTTTGT
Left flanking sequence: Indices 128783 -- 129282
GCGGGTGCCGGGGGGCAGCACGTAGTGGGGCACCACCTCGTCCTTCTCGTCGGTCAGGTGGTCGG
ACGTGTCCGGGGTGAACCTTTCGGGGGACTGTTCCAACTTGGGGGAAAACACGTCCATCGTCCGT
CAACCACCTTTTTCACCACGGCTTTTGTTTTGAATCGGATTACGCGCGCGCGTCCGACGTGATGG
AAGCGAGGCGCGTGGGTGGTGGGGGTGGGGTGTAGGGGACGTGTGAGGGGATTGGCGGGTGTAGG
GTGGTTTAGGGTGGTGTATGGTGGTATAGGGTGGTACTGTGGGTGAGAGTGGGTGGTATAGGGTG
AGAGTGGGGTGTGCTTAGTGGTTCACTGGTGTAGTGATTATTTGATCTTATCAGACGCGTGACAG
GAAAAGAACCGGGCCTGTTGCTGTGGGCATTGGTCACGGTTGCGGAGTGGGAGGGGCGACATGAG
GGGTAGGTCAAGGACGTCGGGTGGCCAAGGTTGTGGAGGTATACA
Right flanking sequence: Indices 129328 -- 129827
AAGTTGTGGGGTAGCAACGTTGTGGAGGACCAAGTCGTGGGAAACCACTTTGTGGGGTAACCACG
TACGGCAGAGCCATGTCGTAGGGCACTAGCCATGATGGGTCACCACGTTGTGGGGTAGGACCATG
TTGTAGGGATTTAGCTGGTTGTATGGTGCTAGCCACGATGTAGGGTATTAGGGTTGTTTAGGGTA
CTAGCCATAGACCAGCCAATTGAATGGTCGTCAATTGTATGGTAATAGCCGGTTGTATTTCACTA
GTCAATTGTGGTACTAGCCATAATATAGAGAATAAGTATTGTTTAGAGGACTAGCCATAGACTAG
TCGATCTTATGGTAACATTCAATTGTATAATACTAGTCAATTGTATGGCACTAGTCAATTATGGT
TCTACAAGCAGCTAAGCCGGACCGTATCCCCTGTGCTCCTTCAGTCGTGGGTAGCTGTTGGTGGG
CTTAAACTGTTGGTTACCTCACCCACACCACCGTCCACCATCACC
Found at i:129334 original size:17 final size:17
Alignment explanation
Indices: 129297--129338 Score: 57
Period size: 17 Copynumber: 2.5 Consensus size: 17
129287 TAGGACCTTT
***
129297 TTGTGGGGAGGACCTTT
1 TTGTGGGGAGGACCAAG
129314 TTGTGGGGAGGACCAAG
1 TTGTGGGGAGGACCAAG
129331 TTGTGGGG
1 TTGTGGGG
129339 TAGCAACGTT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.14, C:0.10, G:0.48, T:0.29
Consensus pattern (17 bp):
TTGTGGGGAGGACCAAG
Left flanking sequence: Indices 128797 -- 129296
GCAGCACGTAGTGGGGCACCACCTCGTCCTTCTCGTCGGTCAGGTGGTCGGACGTGTCCGGGGTG
AACCTTTCGGGGGACTGTTCCAACTTGGGGGAAAACACGTCCATCGTCCGTCAACCACCTTTTTC
ACCACGGCTTTTGTTTTGAATCGGATTACGCGCGCGCGTCCGACGTGATGGAAGCGAGGCGCGTG
GGTGGTGGGGGTGGGGTGTAGGGGACGTGTGAGGGGATTGGCGGGTGTAGGGTGGTTTAGGGTGG
TGTATGGTGGTATAGGGTGGTACTGTGGGTGAGAGTGGGTGGTATAGGGTGAGAGTGGGGTGTGC
TTAGTGGTTCACTGGTGTAGTGATTATTTGATCTTATCAGACGCGTGACAGGAAAAGAACCGGGC
CTGTTGCTGTGGGCATTGGTCACGGTTGCGGAGTGGGAGGGGCGACATGAGGGGTAGGTCAAGGA
CGTCGGGTGGCCAAGGTTGTGGAGGTATACAGGGGTAGGACCTTT
Right flanking sequence: Indices 129339 -- 129838
TAGCAACGTTGTGGAGGACCAAGTCGTGGGAAACCACTTTGTGGGGTAACCACGTACGGCAGAGC
CATGTCGTAGGGCACTAGCCATGATGGGTCACCACGTTGTGGGGTAGGACCATGTTGTAGGGATT
TAGCTGGTTGTATGGTGCTAGCCACGATGTAGGGTATTAGGGTTGTTTAGGGTACTAGCCATAGA
CCAGCCAATTGAATGGTCGTCAATTGTATGGTAATAGCCGGTTGTATTTCACTAGTCAATTGTGG
TACTAGCCATAATATAGAGAATAAGTATTGTTTAGAGGACTAGCCATAGACTAGTCGATCTTATG
GTAACATTCAATTGTATAATACTAGTCAATTGTATGGCACTAGTCAATTATGGTTCTACAAGCAG
CTAAGCCGGACCGTATCCCCTGTGCTCCTTCAGTCGTGGGTAGCTGTTGGTGGGCTTAAACTGTT
GGTTACCTCACCCACACCACCGTCCACCATCACCCCACCCACCAA
Found at i:129694 original size:18 final size:18
Alignment explanation
Indices: 129671--129712 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
129661 ATGGTAACAT
*
129671 TCAATTGTATAATACTAG
1 TCAATTGTATAACACTAG
**
129689 TCAATTGTATGGCACTAG
1 TCAATTGTATAACACTAG
129707 TCAATT
1 TCAATT
129713 ATGGTTCTAC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.33, C:0.14, G:0.14, T:0.38
Consensus pattern (18 bp):
TCAATTGTATAACACTAG
Left flanking sequence: Indices 129171 -- 129670
AGGAAAAGAACCGGGCCTGTTGCTGTGGGCATTGGTCACGGTTGCGGAGTGGGAGGGGCGACATG
AGGGGTAGGTCAAGGACGTCGGGTGGCCAAGGTTGTGGAGGTATACAGGGGTAGGACCTTTTTGT
GGGGAGGACCTTTTTGTGGGGAGGACCAAGTTGTGGGGTAGCAACGTTGTGGAGGACCAAGTCGT
GGGAAACCACTTTGTGGGGTAACCACGTACGGCAGAGCCATGTCGTAGGGCACTAGCCATGATGG
GTCACCACGTTGTGGGGTAGGACCATGTTGTAGGGATTTAGCTGGTTGTATGGTGCTAGCCACGA
TGTAGGGTATTAGGGTTGTTTAGGGTACTAGCCATAGACCAGCCAATTGAATGGTCGTCAATTGT
ATGGTAATAGCCGGTTGTATTTCACTAGTCAATTGTGGTACTAGCCATAATATAGAGAATAAGTA
TTGTTTAGAGGACTAGCCATAGACTAGTCGATCTTATGGTAACAT
Right flanking sequence: Indices 129713 -- 130212
ATGGTTCTACAAGCAGCTAAGCCGGACCGTATCCCCTGTGCTCCTTCAGTCGTGGGTAGCTGTTG
GTGGGCTTAAACTGTTGGTTACCTCACCCACACCACCGTCCACCATCACCCCACCCACCAACTTC
CACGCCATACAACATACACCACCAAAACCACCAAAACCTAACACACTATAACTGCCACACTCTAG
GCGTTGGGGGGGTCTGGGGGGGGCGCCGCTCGCGGCCCCCCCAGCTACAATTCTAGCTTATGTGA
CCCCACGCTGTAGAGTCTAAGCATTGTGTAGGGTACTAGCTATAGACTAGCCAATTGTATAGCAA
TAGTCAATTGTATGATGCTAACCATTATGGTCAAGCCACAATTCAGGGACTAGCCACGGTTCAGA
GACCTATCTAGGAGTAGGATAGTGGCTATGGAACTCACGATACAACGCATCCCCATGGTACGGTT
ATGTATCTAGTCGCTTCTAGAAACCTTTAGTCTAGCGTCACCGTT
Found at i:132461 original size:9 final size:9
Alignment explanation
Indices: 132444--132477 Score: 50
Period size: 9 Copynumber: 3.7 Consensus size: 9
132434 GGCGTCGGCT
*
132444 CGTCGGTCGT
1 CGTC-GTCGC
132454 CGTCGTCGC
1 CGTCGTCGC
132463 CGTCGTCGC
1 CGTCGTCGC
132472 CGTCGT
1 CGTCGT
132478 TTTTCTCTTC
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
9 19 0.83
10 4 0.17
ACGTcount: A:0.00, C:0.38, G:0.35, T:0.26
Consensus pattern (9 bp):
CGTCGTCGC
Left flanking sequence: Indices 131944 -- 132443
CGAGCCGCAGCAGCAACGAGCTGAGGTACTGGCGCCAGTTGCCGAGGTCCATCTTCGGTGGCGAC
GGCGCCTGGCTCGAGCCCTGCAGCACGCCCGCCAGGTGCTCGCTCTGGGTCAGCAGGGCTGCGCC
AAAGAGCCCTGCGGCAAACCCGGGCTTCTGGTTGGGAAGACACGCGCCCCACTCGGGCACGATGC
AGTTCTGCGGGTGGTACTCGTCGTCGTGGTCCTTGATCTGGTTGAACTGCTTCGCCTTGTCGTGG
GGTTTGTAGAGCACGGCGTCCTCCGGGTCCTCGACCGGGATGATGGTGTTGGCCAGGATCGGGGC
CTTGCGCTTGGCGGGAGCCTCCTCGGAGTCGGAGCCCTCGTTGCTGGCGCTGCTGCTGCGCCAGA
ACGTCCATCCCTTGCGTTTGCGGGACGCCAGCTCCTCCTCCTCGTTGTCGATGTCCTCGTCGTCG
CCGTCGTCGGGCGGAGCAATCATCTCGTCCACGGCGGCGTCGGCT
Right flanking sequence: Indices 132478 -- 132977
TTTTCTCTTCCCAGTGGCGTTCGTCACGGATTCCTTCTTTAACCAGGTTGGCGACCAGCGCCCCG
TCCAGGTCGCTGTCGTGCGGGGCCGGAGGCGACCGCAGCGGGTCGTTGCCCTTGAGACTGGCGGA
GGACGAGGTGTCGCCGTCGCCTTTGCCCCAGGGCATCCAGTTCAGTCGGCCCATGTGTTTGGTTG
CTGTGGTGGGAGCTAAATTTGGTTGCAGTTTGCTTGTGATATCTCCGCATTTCCTCTGGACCCAC
GCACGCTATTAACGTTGGGTGGGTCATAACCAGCGAAAAAATAAACAGAGGTGGGATAGAAGGTA
GGGTGGAGGGTGATAGAGGGGTAGAGTGTGTCAATTGGTATGGCCTAGGCAATTGTAGTTGGCTG
TGGTGTTTGGTTACGTTCTTTAGTTTCGATCGTTGGTCAGTGCTGGGCGGGCCCAACAGGCTGAC
CTCTCACATGGCACTCGTGGCTAATGATTGCCCAAACCGGACATG
Found at i:133079 original size:12 final size:12
Alignment explanation
Indices: 133062--133136 Score: 60
Period size: 12 Copynumber: 5.9 Consensus size: 12
133052 CACTCTTTCT
133062 TTGACCCTCCCA
1 TTGACCCTCCCA
*
133074 TTGACCCTCTCA
1 TTGACCCTCCCA
**
133086 TTGACATTTTCCCA
1 TTGAC--CCTCCCA
*
133100 TTGACCTTTCCCA
1 TTGACC-CTCCCA
* *
133113 TTGACCCTCTCT
1 TTGACCCTCCCA
133125 TTGACCACTCCC
1 TTGACC-CTCCC
133137 TTTCACTACT
Statistics
Matches: 50, Mismatches: 9, Indels: 7
0.76 0.14 0.11
Matches are distributed among these distances:
12 25 0.50
13 16 0.32
14 9 0.18
ACGTcount: A:0.16, C:0.41, G:0.08, T:0.35
Consensus pattern (12 bp):
TTGACCCTCCCA
Left flanking sequence: Indices 132562 -- 133061
GGGCCGGAGGCGACCGCAGCGGGTCGTTGCCCTTGAGACTGGCGGAGGACGAGGTGTCGCCGTCG
CCTTTGCCCCAGGGCATCCAGTTCAGTCGGCCCATGTGTTTGGTTGCTGTGGTGGGAGCTAAATT
TGGTTGCAGTTTGCTTGTGATATCTCCGCATTTCCTCTGGACCCACGCACGCTATTAACGTTGGG
TGGGTCATAACCAGCGAAAAAATAAACAGAGGTGGGATAGAAGGTAGGGTGGAGGGTGATAGAGG
GGTAGAGTGTGTCAATTGGTATGGCCTAGGCAATTGTAGTTGGCTGTGGTGTTTGGTTACGTTCT
TTAGTTTCGATCGTTGGTCAGTGCTGGGCGGGCCCAACAGGCTGACCTCTCACATGGCACTCGTG
GCTAATGATTGCCCAAACCGGACATGGTGCGAGCATACAATAAGGCAACGAGGTCGCTTCTTTCC
GGGAGAGGACATTTTCTGTTATCAGCAATTCCATTCACTCTTTCT
Right flanking sequence: Indices 133137 -- 133636
TTTCACTACTTCTCTTGCCTTCCTATTGCCACTTCCACTCACGTGCGCAGTCACGTGCCGCGCAC
GATAACCCACCACCACCACCAGTAACCCACCGAGACATGCTGGTGATCTTAGCCCTGGCTGGGTA
CGACCACACCATCCGGTTCTGGGACGCGCTCACGGGCGTGTGTTCCCGGACAATTCTGCACACCG
ACTCCCAGGTCAACCGGTTGGAAATCACCAACGACAAGCGCTTTTTGGCCGCCGCCGGGCACATG
TACGTGCGGCTCTACGACATCCGCCAGGGCGGAGCCAGCACGCTGGGCACCCACGGGGCCGCGGG
CGGGCAGGGCTCGGCGGCGGCGTCGGGCCTGCTGGCCAACAACAACAACTCGCAGGCGGTGATGA
CGTTCGAGGGCCACACGCTGAACGTGACGCTGTTGCAGTTCCAGGTGGAAAACAAGTGGATGGTG
ACGCTGCTGGAGGACGGGATGGTCAAGGTGTGGGACGTGCGCGCG
Found at i:133111 original size:13 final size:13
Alignment explanation
Indices: 133069--133118 Score: 57
Period size: 13 Copynumber: 3.8 Consensus size: 13
133059 TCTTTGACCC
*
133069 TCCCATTGACC-C
1 TCCCATTGACCTT
* *
133081 TCTCATTGACATTT
1 TCCCATTGAC-CTT
133095 TCCCATTGACCTT
1 TCCCATTGACCTT
133108 TCCCATTGACC
1 TCCCATTGACC
133119 CTCTCTTTGA
Statistics
Matches: 31, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
12 9 0.29
13 13 0.42
14 9 0.29
ACGTcount: A:0.18, C:0.38, G:0.08, T:0.36
Consensus pattern (13 bp):
TCCCATTGACCTT
Left flanking sequence: Indices 132569 -- 133068
AGGCGACCGCAGCGGGTCGTTGCCCTTGAGACTGGCGGAGGACGAGGTGTCGCCGTCGCCTTTGC
CCCAGGGCATCCAGTTCAGTCGGCCCATGTGTTTGGTTGCTGTGGTGGGAGCTAAATTTGGTTGC
AGTTTGCTTGTGATATCTCCGCATTTCCTCTGGACCCACGCACGCTATTAACGTTGGGTGGGTCA
TAACCAGCGAAAAAATAAACAGAGGTGGGATAGAAGGTAGGGTGGAGGGTGATAGAGGGGTAGAG
TGTGTCAATTGGTATGGCCTAGGCAATTGTAGTTGGCTGTGGTGTTTGGTTACGTTCTTTAGTTT
CGATCGTTGGTCAGTGCTGGGCGGGCCCAACAGGCTGACCTCTCACATGGCACTCGTGGCTAATG
ATTGCCCAAACCGGACATGGTGCGAGCATACAATAAGGCAACGAGGTCGCTTCTTTCCGGGAGAG
GACATTTTCTGTTATCAGCAATTCCATTCACTCTTTCTTTGACCC
Right flanking sequence: Indices 133119 -- 133618
CTCTCTTTGACCACTCCCTTTCACTACTTCTCTTGCCTTCCTATTGCCACTTCCACTCACGTGCG
CAGTCACGTGCCGCGCACGATAACCCACCACCACCACCAGTAACCCACCGAGACATGCTGGTGAT
CTTAGCCCTGGCTGGGTACGACCACACCATCCGGTTCTGGGACGCGCTCACGGGCGTGTGTTCCC
GGACAATTCTGCACACCGACTCCCAGGTCAACCGGTTGGAAATCACCAACGACAAGCGCTTTTTG
GCCGCCGCCGGGCACATGTACGTGCGGCTCTACGACATCCGCCAGGGCGGAGCCAGCACGCTGGG
CACCCACGGGGCCGCGGGCGGGCAGGGCTCGGCGGCGGCGTCGGGCCTGCTGGCCAACAACAACA
ACTCGCAGGCGGTGATGACGTTCGAGGGCCACACGCTGAACGTGACGCTGTTGCAGTTCCAGGTG
GAAAACAAGTGGATGGTGACGCTGCTGGAGGACGGGATGGTCAAG
Found at i:134488 original size:24 final size:26
Alignment explanation
Indices: 134460--134523 Score: 78
Period size: 28 Copynumber: 2.5 Consensus size: 26
134450 AGGCGGTAAT
134460 CGAGGTGGT-A-AGATAGTTACCAAA
1 CGAGGTGGTGAGAGATAGTTACCAAA
*
134484 CGAGGTGGTGAGTGAGATAGTTACCAAG
1 CGAGGTGGTGA--GAGATAGTTACCAAA
*
134512 CTAGGTGGTGAG
1 CGAGGTGGTGAG
134524 TGGGTTGATA
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
24 9 0.26
25 1 0.03
26 1 0.03
28 23 0.68
ACGTcount: A:0.30, C:0.11, G:0.38, T:0.22
Consensus pattern (26 bp):
CGAGGTGGTGAGAGATAGTTACCAAA
Left flanking sequence: Indices 133960 -- 134459
GTTGCTGACGGACATGAAGCACTTGGCCACCTGTAGTGCCGACCACACCGCGCGCATCTGGCTGG
CGGAGCAGAACTTCAAGTTGGAGACGACGTTGCAGGGCCACCAGCGGTGGGTGTGGGACTGTGCG
TTCAGCGCGGACTCGGCGTACTTGGTGACGGCGTGTTCCGACCACTATGTGCGGTTGTGGGACTT
GTCCAACTCGGAGACGGTGCGGCAGTACAACGGGCACCACAAGGGGGCGGTGTGCGTGGCGTTGA
ACGATGTGTGAGAGAATGGTAGTGGTCTACAAGGGAGAAATAGCGAGATGTTTATCGAGCGAGTG
GTCTACAATGGGTTTCGAGAAATATCCAGGCGAGATGGTAATCGAGCGAGATGGTATTTGAGTTG
GTAATCAGCCACTGGTAATCGCCGGGTTGGTAGTCAACCGAGAACGTACTCAAGCCTATTAGTCA
GTCGAGTGGGTAGCAAGTGAGGTGGTGGGCAAGCGAGGCGGTAAT
Right flanking sequence: Indices 134524 -- 135023
TGGGTTGATAACCTTCCGAGTTGGTAAACAAGTGAGCTGGTAATCAACCGAGTAAGCAAATGAGT
TGTTAATTTGATAAGCAGGCTGATCGTCCGAACGATCAGACCACCCAGCTCGTTACGCCCAATGC
TTCTTCATGAGTCCTACTGCTTGACTTTTACACCACTGCGATCTTTCCGATCTTTCATCATTTCC
ATCTTTTCCCCCTTCCAATTACCACCTTCCCATTACCACCTGCCAACACCACCTGCCAATACCAC
CTGCCAATACCACCTGCCCTTTTCACCGCCTGCCACTTAACCACCCTCCCACTACCTCCCTCCCA
CTACCTCCCACTAACCACCCCACACGCATCCACCCACCCAACCACCCCCACTAACCACCCCACCA
TTCAACCTGCCACTCATTCCCCCTACCCTCATTATGCATGCATTCCAAACCGTGCTATAAAAATC
CTATATAAATGACCCGTTATAAATATTCTATCCAAAAAAGTTTTC
Found at i:134502 original size:28 final size:28
Alignment explanation
Indices: 134470--134525 Score: 94
Period size: 28 Copynumber: 2.0 Consensus size: 28
134460 CGAGGTGGTA
134470 AGATAGTTACCAAACGAGGTGGTGAGTG
1 AGATAGTTACCAAACGAGGTGGTGAGTG
* *
134498 AGATAGTTACCAAGCTAGGTGGTGAGTG
1 AGATAGTTACCAAACGAGGTGGTGAGTG
134526 GGTTGATAAC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.30, C:0.11, G:0.36, T:0.23
Consensus pattern (28 bp):
AGATAGTTACCAAACGAGGTGGTGAGTG
Left flanking sequence: Indices 133970 -- 134469
GACATGAAGCACTTGGCCACCTGTAGTGCCGACCACACCGCGCGCATCTGGCTGGCGGAGCAGAA
CTTCAAGTTGGAGACGACGTTGCAGGGCCACCAGCGGTGGGTGTGGGACTGTGCGTTCAGCGCGG
ACTCGGCGTACTTGGTGACGGCGTGTTCCGACCACTATGTGCGGTTGTGGGACTTGTCCAACTCG
GAGACGGTGCGGCAGTACAACGGGCACCACAAGGGGGCGGTGTGCGTGGCGTTGAACGATGTGTG
AGAGAATGGTAGTGGTCTACAAGGGAGAAATAGCGAGATGTTTATCGAGCGAGTGGTCTACAATG
GGTTTCGAGAAATATCCAGGCGAGATGGTAATCGAGCGAGATGGTATTTGAGTTGGTAATCAGCC
ACTGGTAATCGCCGGGTTGGTAGTCAACCGAGAACGTACTCAAGCCTATTAGTCAGTCGAGTGGG
TAGCAAGTGAGGTGGTGGGCAAGCGAGGCGGTAATCGAGGTGGTA
Right flanking sequence: Indices 134526 -- 135025
GGTTGATAACCTTCCGAGTTGGTAAACAAGTGAGCTGGTAATCAACCGAGTAAGCAAATGAGTTG
TTAATTTGATAAGCAGGCTGATCGTCCGAACGATCAGACCACCCAGCTCGTTACGCCCAATGCTT
CTTCATGAGTCCTACTGCTTGACTTTTACACCACTGCGATCTTTCCGATCTTTCATCATTTCCAT
CTTTTCCCCCTTCCAATTACCACCTTCCCATTACCACCTGCCAACACCACCTGCCAATACCACCT
GCCAATACCACCTGCCCTTTTCACCGCCTGCCACTTAACCACCCTCCCACTACCTCCCTCCCACT
ACCTCCCACTAACCACCCCACACGCATCCACCCACCCAACCACCCCCACTAACCACCCCACCATT
CAACCTGCCACTCATTCCCCCTACCCTCATTATGCATGCATTCCAAACCGTGCTATAAAAATCCT
ATATAAATGACCCGTTATAAATATTCTATCCAAAAAAGTTTTCCA
Found at i:134771 original size:13 final size:13
Alignment explanation
Indices: 134733--134801 Score: 93
Period size: 13 Copynumber: 5.2 Consensus size: 13
134723 TTTCCCCCTT
*
134733 CCAATTACCACCTTC
1 CCAA-TACCACC-TG
*
134748 CCATTACCACCTG
1 CCAATACCACCTG
*
134761 CCAACACCACCTG
1 CCAATACCACCTG
134774 CCAATACCACCTG
1 CCAATACCACCTG
134787 CCAATACCACCTG
1 CCAATACCACCTG
134800 CC
1 CC
134802 CTTTTCACCG
Statistics
Matches: 49, Mismatches: 5, Indels: 2
0.88 0.09 0.04
Matches are distributed among these distances:
13 39 0.80
14 7 0.14
15 3 0.06
ACGTcount: A:0.28, C:0.49, G:0.06, T:0.17
Consensus pattern (13 bp):
CCAATACCACCTG
Left flanking sequence: Indices 134233 -- 134732
GAATGGTAGTGGTCTACAAGGGAGAAATAGCGAGATGTTTATCGAGCGAGTGGTCTACAATGGGT
TTCGAGAAATATCCAGGCGAGATGGTAATCGAGCGAGATGGTATTTGAGTTGGTAATCAGCCACT
GGTAATCGCCGGGTTGGTAGTCAACCGAGAACGTACTCAAGCCTATTAGTCAGTCGAGTGGGTAG
CAAGTGAGGTGGTGGGCAAGCGAGGCGGTAATCGAGGTGGTAAGATAGTTACCAAACGAGGTGGT
GAGTGAGATAGTTACCAAGCTAGGTGGTGAGTGGGTTGATAACCTTCCGAGTTGGTAAACAAGTG
AGCTGGTAATCAACCGAGTAAGCAAATGAGTTGTTAATTTGATAAGCAGGCTGATCGTCCGAACG
ATCAGACCACCCAGCTCGTTACGCCCAATGCTTCTTCATGAGTCCTACTGCTTGACTTTTACACC
ACTGCGATCTTTCCGATCTTTCATCATTTCCATCTTTTCCCCCTT
Right flanking sequence: Indices 134802 -- 135301
CTTTTCACCGCCTGCCACTTAACCACCCTCCCACTACCTCCCTCCCACTACCTCCCACTAACCAC
CCCACACGCATCCACCCACCCAACCACCCCCACTAACCACCCCACCATTCAACCTGCCACTCATT
CCCCCTACCCTCATTATGCATGCATTCCAAACCGTGCTATAAAAATCCTATATAAATGACCCGTT
ATAAATATTCTATCCAAAAAAGTTTTCCACCTTGGCTTCGTAGTTGAGGAGCACGTCGTTGGGAA
CACCACCCACGCCGTCGTCCTTGCCACCGCCAGTGGCGCTGTCGATACCAAGAGAAAAGTCCATC
AAGTCAACGGTGCCAAACAGCAAGTTGCCACTCAGCGCGTCGGCGCCGCCGTCGCCCGAGGGCTC
GCCCGCACCGTCGCCGTGGGCAAAGTCCTCGATCGCCACCGGAGCGTCGCCAATGTCGTCCACGG
GATGCAGCATCTGCGCCTCGGGAGCCGGTGCTGGTGCGTGGCGCG
Found at i:134846 original size:14 final size:14
Alignment explanation
Indices: 134827--134857 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
134817 CACTTAACCA
134827 CCCTCCCACTACCT
1 CCCTCCCACTACCT
134841 CCCTCCCACTACCT
1 CCCTCCCACTACCT
134855 CCC
1 CCC
134858 ACTAACCACC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.13, C:0.68, G:0.00, T:0.19
Consensus pattern (14 bp):
CCCTCCCACTACCT
Left flanking sequence: Indices 134327 -- 134826
CGAGCGAGATGGTATTTGAGTTGGTAATCAGCCACTGGTAATCGCCGGGTTGGTAGTCAACCGAG
AACGTACTCAAGCCTATTAGTCAGTCGAGTGGGTAGCAAGTGAGGTGGTGGGCAAGCGAGGCGGT
AATCGAGGTGGTAAGATAGTTACCAAACGAGGTGGTGAGTGAGATAGTTACCAAGCTAGGTGGTG
AGTGGGTTGATAACCTTCCGAGTTGGTAAACAAGTGAGCTGGTAATCAACCGAGTAAGCAAATGA
GTTGTTAATTTGATAAGCAGGCTGATCGTCCGAACGATCAGACCACCCAGCTCGTTACGCCCAAT
GCTTCTTCATGAGTCCTACTGCTTGACTTTTACACCACTGCGATCTTTCCGATCTTTCATCATTT
CCATCTTTTCCCCCTTCCAATTACCACCTTCCCATTACCACCTGCCAACACCACCTGCCAATACC
ACCTGCCAATACCACCTGCCCTTTTCACCGCCTGCCACTTAACCA
Right flanking sequence: Indices 134858 -- 135357
ACTAACCACCCCACACGCATCCACCCACCCAACCACCCCCACTAACCACCCCACCATTCAACCTG
CCACTCATTCCCCCTACCCTCATTATGCATGCATTCCAAACCGTGCTATAAAAATCCTATATAAA
TGACCCGTTATAAATATTCTATCCAAAAAAGTTTTCCACCTTGGCTTCGTAGTTGAGGAGCACGT
CGTTGGGAACACCACCCACGCCGTCGTCCTTGCCACCGCCAGTGGCGCTGTCGATACCAAGAGAA
AAGTCCATCAAGTCAACGGTGCCAAACAGCAAGTTGCCACTCAGCGCGTCGGCGCCGCCGTCGCC
CGAGGGCTCGCCCGCACCGTCGCCGTGGGCAAAGTCCTCGATCGCCACCGGAGCGTCGCCAATGT
CGTCCACGGGATGCAGCATCTGCGCCTCGGGAGCCGGTGCTGGTGCGTGGCGCGGGGTGCGGTGG
GCCCGGGCAATGTCGTCGGCCAAAAAGCCCCCGAGCTCAAAGCAC
Found at i:134911 original size:12 final size:13
Alignment explanation
Indices: 134855--134909 Score: 51
Period size: 13 Copynumber: 4.2 Consensus size: 13
134845 CCCACTACCT
134855 CCCACTAACCACC
1 CCCACTAACCACC
* *
134868 CCACACGCATCCACC
1 CC-CAC-TAACCACC
134883 CACC-C-AACCACC
1 C-CCACTAACCACC
134895 CCCACTAACCACC
1 CCCACTAACCACC
134908 CC
1 CC
134910 ACCATTCAAC
Statistics
Matches: 34, Mismatches: 3, Indels: 10
0.72 0.06 0.21
Matches are distributed among these distances:
11 2 0.06
12 8 0.24
13 11 0.32
14 4 0.12
15 8 0.24
16 1 0.03
ACGTcount: A:0.29, C:0.64, G:0.02, T:0.05
Consensus pattern (13 bp):
CCCACTAACCACC
Left flanking sequence: Indices 134355 -- 134854
CAGCCACTGGTAATCGCCGGGTTGGTAGTCAACCGAGAACGTACTCAAGCCTATTAGTCAGTCGA
GTGGGTAGCAAGTGAGGTGGTGGGCAAGCGAGGCGGTAATCGAGGTGGTAAGATAGTTACCAAAC
GAGGTGGTGAGTGAGATAGTTACCAAGCTAGGTGGTGAGTGGGTTGATAACCTTCCGAGTTGGTA
AACAAGTGAGCTGGTAATCAACCGAGTAAGCAAATGAGTTGTTAATTTGATAAGCAGGCTGATCG
TCCGAACGATCAGACCACCCAGCTCGTTACGCCCAATGCTTCTTCATGAGTCCTACTGCTTGACT
TTTACACCACTGCGATCTTTCCGATCTTTCATCATTTCCATCTTTTCCCCCTTCCAATTACCACC
TTCCCATTACCACCTGCCAACACCACCTGCCAATACCACCTGCCAATACCACCTGCCCTTTTCAC
CGCCTGCCACTTAACCACCCTCCCACTACCTCCCTCCCACTACCT
Right flanking sequence: Indices 134910 -- 135409
ACCATTCAACCTGCCACTCATTCCCCCTACCCTCATTATGCATGCATTCCAAACCGTGCTATAAA
AATCCTATATAAATGACCCGTTATAAATATTCTATCCAAAAAAGTTTTCCACCTTGGCTTCGTAG
TTGAGGAGCACGTCGTTGGGAACACCACCCACGCCGTCGTCCTTGCCACCGCCAGTGGCGCTGTC
GATACCAAGAGAAAAGTCCATCAAGTCAACGGTGCCAAACAGCAAGTTGCCACTCAGCGCGTCGG
CGCCGCCGTCGCCCGAGGGCTCGCCCGCACCGTCGCCGTGGGCAAAGTCCTCGATCGCCACCGGA
GCGTCGCCAATGTCGTCCACGGGATGCAGCATCTGCGCCTCGGGAGCCGGTGCTGGTGCGTGGCG
CGGGGTGCGGTGGGCCCGGGCAATGTCGTCGGCCAAAAAGCCCCCGAGCTCAAAGCACCAGAGCA
CGTACTCGTCCACCCAGCACCGCATCACCCACCACGCACCAAACC
Found at i:139685 original size:9 final size:9
Alignment explanation
Indices: 139671--139695 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
139661 TCAGTAGCTA
139671 CTAGTGTGG
1 CTAGTGTGG
139680 CTAGTGTGG
1 CTAGTGTGG
139689 CTAGTGT
1 CTAGTGT
139696 ACCTACTTGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.12, C:0.12, G:0.40, T:0.36
Consensus pattern (9 bp):
CTAGTGTGG
Left flanking sequence: Indices 139171 -- 139670
TCCACCATCGGGTTGTTGGGCTACATCGCGCCCTACATCATGGTGGGCGAGCCTCTGCACGCGCT
GGTGCGTAAGTTGTTCCAGAAGCGGGGCCGCTACACCACGCCTGAGGGCGAGGTGGCCAAGCTCG
ACAACAACCAGGCGGTGGAGGACAAGTTCGAGGACGACTTGGGGCTCATCTGTATCGAGGACGTC
ATTCACGAGTTGACTTCGTTGAGCGACAACTTCAACACCATCACCCTGTGGTTGTTGCCGTTCAA
GTTGAACGCCCCCGTCAACGGGTGGTCCCCGCGGGCAAAGCTCGCCAAGTTGATGCATCAAGAAG
CCAACAAGCGGTCGATCTCGATGGCGCGCGACTTCCGGTTGCAGGAGGTCGACGACATCGATGGC
ATTATTGAAACTCAAAACTAATCTCTGTACACTAGCAATTAAGGTTATCTGGAATGAACATCTCA
TTAAGGTGGACTTGGTAGACTATTTGGTATAGTATTCAGTAGCTA
Right flanking sequence: Indices 139696 -- 140195
ACCTACTTGTGTAGACTTATTTAGTGTACCTACTTGTGTATCTACTGGCTACTTTTTGCACCCAA
GTGCGGCTTATGCAAAGATGTTCTAATGACTATACGAGTTCTCTCTTCAACCGCAAAAGGTTCTT
GCGGTCCCGTTCGAGCTGCTTGCGCTCGATCTTGGCCATGGCTGCCAACCGGATGCGTTCGCCGT
ACTTGTAGCACATGATGGGGTACCCGATCAACAACAACGCGATCAATCCGCACATGGTGTTGCTC
CACCCGTAACCCATCAGCGCGTACATCTTCGGGGCAAACAACGGGAAGGTGAAGCCAAAGAGCGA
CCGGAACATCGCGGCCGCGGCCACCGTCAGCGCCGAGAAGTTGATGATGATCTCAGTGCCCTCGT
CGTTGCGGGTGCGGTGAATCAGCATGTCAATGAAGTAAGACTGACTCAGCTGGAACAAGCACACA
AGCCCAAACGCAAACAACCCCAGCCCGATCCCGGGCATGATCCAG
Found at i:145567 original size:15 final size:15
Alignment explanation
Indices: 145547--145576 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
145537 GGGAAGTACT
145547 CTCTCTACCCCTACA
1 CTCTCTACCCCTACA
145562 CTCTCTACCCCTACA
1 CTCTCTACCCCTACA
145577 TCGGTCCTGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.20, C:0.53, G:0.00, T:0.27
Consensus pattern (15 bp):
CTCTCTACCCCTACA
Left flanking sequence: Indices 145047 -- 145546
ATCTTGCCAAAGAAGTAGGTGTTGCCATCGCGATTGGTCAACAACAACACTGGGGCGCGGGTGTC
GTGGTTGACGTGGGCAATGGTCTTGATCTTGAACATGGTTTCGGCCGGCTGACGGGTGGCTCGGT
AGTAGCGATCACGGGCTTTTTCCAGAGCAAACAAGCGCGGAGCGAGATGGGCACGGGCGGGTGGG
AGGAAAGTTTTAGGTTTGGCCTTGTGTAAGGGCAAACACGGCTTCACTTTGACGGATGGACTCGA
TGACTTGATTTTCGCACCGCGATAAGATCAGGGTTGTGGGGCAGAGGAAGACGGGGAAAATAGGG
CACATCAGTGGTGGGACTGGTTGAAGTGAGTACTGTGTTGTGGTGGTGGTTTGATCGGTGCTTTT
GTTCATCACTCCAACTCAATCATCATGATATATAGTATGCCTTGCTCTTCTTTTTTTTGTTTTTT
GGTGTAACTGGTGGGTCAAACATACTAGTACGTGTGGGAAGTACT
Right flanking sequence: Indices 145577 -- 146076
TCGGTCCTGATAATCGTTAAATGATAGTCTATACCAATTACATACAACCCACGCAATGCTCGGCG
CAGCTGCTCCCCCATCCTTTCTATGATACAAGCCCACAGGCGAGGTGTCGAAACACCCAATGCAA
CCGTCTAGTTATTGGTTCTGAACCGGTAGCCACACGAGGTACAGGTGTAGAACACCGTGGCACCT
TCATCTGCCGATCTGAGCTGCAACGTGTGGTACTGCATTTCTTCGTTGCCACACTTGGGACACTT
CTCCTTGATGGTGGCACCGTCGTCCAACTCGTCCTTGTTCAACGAAGTCTTGACCGCAGACCGGT
TCATCTTCACCCGCGAGGGAAACGCATCGTCGCTCGAGGTGGTGACGACCTTCAAGTCCAGGAAC
TTTTGCTTGGAGTAGGTGGAGGTGCACAAGCCACACTTGATATCCTTGTTGCCCTCGGTCTGGGA
GTCCAACAAGTTACCGCACAGGGTACAGAAAATAAGCGAACCAAC
Found at i:177901 original size:11 final size:11
Alignment explanation
Indices: 177887--177915 Score: 58
Period size: 11 Copynumber: 2.6 Consensus size: 11
177877 CACCACTCCT
177887 CTGATCAACTC
1 CTGATCAACTC
177898 CTGATCAACTC
1 CTGATCAACTC
177909 CTGATCA
1 CTGATCA
177916 CTTCACGAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.28, C:0.34, G:0.10, T:0.28
Consensus pattern (11 bp):
CTGATCAACTC
Left flanking sequence: Indices 177387 -- 177886
GGTTGATCTCGACCACGGGGACGTCGCCGTCGTGGGCGCTCAATAGCGGGCGCAACGACGCGTAG
GTGGGCAGCGCGAGTTTGACGAGGTACTCGTACACTAGCTGCTCATTGGTGTTGTTGCTGATGTA
CACGGCCTCAAACATCGTGGCCGTGGTCCGTGTGGGTGGTGTCAAAAGTCGCACGTGAGCCGCAT
GGTGGGGGAAGAAGGATGATGAAGAGGATGGAGAGGGTGATTGGAAAAGGGTGGAGGGTGGCAGG
GAGAAGTGGAGGTGATCAAGACAGCGCCAGGCTTGTTTTTGCGCTTTCAATTGTAACGCTGAAGA
GATTAAGGTCAATCATATAACTGTTTACTGCGGTCACAGTATACACTTATGCTACACTACACTCC
TTCCTAAGTACGAGATAATTGAGCTGATTGAACGGTACTTCTTAAATCATCAGCAATGCTTGAAC
TGGCAACACTGCCCAAACCTACAGCACGTTTCCTCCACCACTCCT
Right flanking sequence: Indices 177916 -- 178415
CTTCACGAATCCAATTTTTCACTCGGTTACGTGCCCCATACATCTCGCCGCCTGCAGGACACCTT
ACCACGATGAAGACCTGCTACTACGAGTTGTTGGAGGTGCTGGAAACAGCCACCGACACCGAGCT
CCGCAAGGCTTACCGTCGCAAGGCCCTCCAGCTCCACCCTGACAAAAACCCTGACGACGTCGAGG
GCGCCAACGCCCGGTTCGCGGTGGTTCGGGCCGCGTACGAGGTGTTACTGGACCCCCAGGAGCGT
TCGTGGTACGACAGCCACAAGGCACTGATCTTGCGTGAGGATGACGAGGAGTTTGACGACGAGCC
CACTACCCTCTTGCCATGCATGCTGCTTGACGAGTTGATGCGCTACTTCAACCCGGTGTTGTACA
CCCAGGTCGACGACAGTCTCATGGGGTTCTACAAAGTGGTGGAGCGGGTATTCGACCGGTTGGCG
AAGGAGGAGGTTCAGCACGGCAAGCACGAGCGGCTCTCAGGCTTC
Found at i:179205 original size:18 final size:18
Alignment explanation
Indices: 179163--179205 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
179153 CGAGCCAGAT
* *
179163 GAGCTTGAGCCAGAGCTT
1 GAGCATGAGCCAGAGCTC
*
179181 GAACATGAGCCAGAGCTC
1 GAGCATGAGCCAGAGCTC
179199 GAGCATG
1 GAGCATG
179206 TGGCTGAGAC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.28, C:0.23, G:0.33, T:0.16
Consensus pattern (18 bp):
GAGCATGAGCCAGAGCTC
Left flanking sequence: Indices 178663 -- 179162
AGGAGTACAACGAGGCGGTGCGGTCGTACGTCCAGTTCATTAAGAAACGGGATCCCCGGGTGAAA
CTGGGCGCCGAGGCCGTGGAACGCGAGCGTCGGGCCAAGCAGCAGCGGGAGTTTGAGGAGTTGGC
TGCCCAGAAACGCCAGCAGCAACTGGCGCTCAGTGGCAAGTACAAGGAGCAGCAGTGGCAAACGA
TGACGGCCGAGGAGTTGGCCGAGCTCGAGCTCATGCTCGACAACGAGTACGAGGCGCTTCTGACC
GACCTGGAGTTTGAAGAGGAGCCCGAGGACGACATCACCAACGAGTACGAGTGCATTATCTGCGA
CAAGTTCTTCAAGAACGAGAACCAGTTTATCAGTCATGAGAACAGCAATAAGCATAAGAAGGCGC
TCAAGAAGCTCAAGTGGGAGATGCAGAAGGAGGGGATGGAGCTCGGGTTGGACGAGCTTGAGAGC
GAGGGGGAGTCTGAGAACGAGCCAGATCTTGAGAACGAGCCAGAT
Right flanking sequence: Indices 179206 -- 179705
TGGCTGAGACTGAGAAAACCGAACCGCCACAGCCCAAAGAAACTACACCACCAGTGGACTTTTCC
ACTCTTGCCGTCGACGACGAGATTGACGAGGACCTCCAGCTGGCCATCAACTCCCTACAAGTGTC
TGACGACGACGACTGGCTGACCCCGAACAAGCGCACAGAAAAGGGGAACCGCAAGAAGGAAAAGA
AGAAAAAGAAGAACCGCAAATAGCATCCACCTAGCACTAATATCCTGTATTCTATTACATTACCT
TAATTACCCTCGACGCTTGCCTCGCTTGTCCCGGACCCGAGGCTTGGTGTCTGGTGTGGCGGGCT
CGGTTTGGCCCAAACCCACCTTGCTCTTCTTCACCCGGGCTTGCACGGGCTCGGGAATCCCCTGG
TTGCCCGCACCCAACCCTTCGCCGGTCTTCCACCCCAACATCTCCAACATCTTGCGACCGATATT
GTCGCTGGGGATCTCGGGAGCAGCAGCACCGACAATGTCGCCCTC
Found at i:180718 original size:12 final size:12
Alignment explanation
Indices: 180697--180728 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
180687 CTCGTTATTT
*
180697 TCGTCTTCTTCG
1 TCGTCCTCTTCG
180709 TCGTCCTCTTCG
1 TCGTCCTCTTCG
180721 TCGTCCTC
1 TCGTCCTC
180729 GTTTTCACTC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.00, C:0.41, G:0.16, T:0.44
Consensus pattern (12 bp):
TCGTCCTCTTCG
Left flanking sequence: Indices 180197 -- 180696
CCAACTGGTCCAAGTCGAGCTGCTTCTTTCGCCCCTTGCCCTTGGTGCGAACTGTACGGGTCAAT
GGCGGGTCCGATGACTGGAACGACTTGTTGGAGGCGAGCGTCATGAGCATGTCCAAGTTCTCGTC
GTCGAAGCTGTCCTCGGAGTCGGACTCTGACGAGGTCTCAGAGATGTAGACGTCCGAGTAGTCGG
GCTGGTCGTCCACAGGCTGCAGGGCGAGAAGATCTCCGCACATGTACTTGAGGAAGCTCTGGAAG
CGGGCAGGCAGGACCCCGTTCCCACACACGTACTCGTAGAGCTCGTCCTCGTCGATCCAGGCAAA
ACTGGTGTCGTCCCCACTGAGGTCAACGTTGCGGAGGTAGTACTGGTTGGTGATGCCAAACCGCA
CGTTGGTGATGGAGATGGAGGACACGTCAAACGCGAAGTCGTCGGGGTGGAACCCGTACTCCGGA
GTGGGGTCCTCAGCCTCGTCGTTCGCTTCGTCGTCCTCGTTATTT
Right flanking sequence: Indices 180729 -- 181228
GTTTTCACTCTCAGCCATCTCATCAAAGTTCGTCTCGCTGTCGTAGACATCGTCGTCGTCGGAAG
CCACCCCGCCCATGATGTTCTGGATGTAGTCGCGGTAGCCCACTTCCTCGTCAGAGTCCACTTGG
CCCTCGATCACCAACTCCGGAAGCTTCAGGGCCCGAACCCGCAGAGCCCGCTCAAGCTGTCCAAA
GTCGACCACGGGGCCGTCGTCGGTCATGGTGGTACGCAAAAGCGTTTTCCCCACAGCAAAGTAGG
GGTCGTGCTCAAGCGTGTTGAACCGAATTGCCTTCAGTTTGTTGGGACGCTCGTAGCTCACCTCA
CGACACTCGCGCACAAGCGAGGGGTCGGGCTGGTCGTCCATGATGAGCACGTCGTCAAGGTCGAT
CTCGGTGGTCTCAGCCGGGATTTGCAGAGTCTCTTCCGCCATTTCTTCGTCCGCCTCATCGTCCT
CGTCCTTGGATTCACTCACCTCCTTCTGAGATTCACTGTCCATTG
Found at i:181842 original size:16 final size:16
Alignment explanation
Indices: 181819--181883 Score: 112
Period size: 16 Copynumber: 4.1 Consensus size: 16
181809 ACTGTATGAA
181819 TAGTGTACTTGTTGAT
1 TAGTGTACTTGTTGAT
* *
181835 TGGTGTACTTGTCGAT
1 TAGTGTACTTGTTGAT
181851 TAGTGTACTTGTTGAT
1 TAGTGTACTTGTTGAT
181867 TAGTGTACTTGTTGAT
1 TAGTGTACTTGTTGAT
181883 T
1 T
181884 GGGTATTTAT
Statistics
Matches: 45, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 45 1.00
ACGTcount: A:0.17, C:0.08, G:0.26, T:0.49
Consensus pattern (16 bp):
TAGTGTACTTGTTGAT
Left flanking sequence: Indices 181319 -- 181818
GCCGAAGCCTCAGGGCCTCCACTTGCTTGTACAATTCTGCGCTCGGGTCATACACGTGTTTGGCC
TTGACAAACTCCACGGGCCGCAGACGCAACAGCTTGCGCATCGTTTGCTCGGTGTGGCTCGCGGT
GTACTCGGCCTCCTGGGCCATCCGTCCGGGCCGGCGTCCGTAGTACGCAAACGTGTTTGGCTTGG
GCTCCGATAAGTCGTCGAACTCGGGCATGGCGTGTCGAACCGGGGCTCCCGGACGCTTCTTTTTC
TGGGGGTTGGGCCGTCCGTAGTTTGAGCGGGCCTTGCCACGGCTACTCAGACCACCACGTCCTCC
TCGCCTTCCTTTTCCTCGTCCTGGCATGGGTGGTTTGCCGTTGATCTATGAGTCAGGTTGATATG
CAGGCGCGATGTCACTTGCGAAGCTTGAGCCGCACCAACGGCTGCAACGGAGTACGGGCCAGATA
ACGATTACGACGGCAGGTTCTACGAAACTGACATAACTGTATGAA
Right flanking sequence: Indices 181884 -- 182383
GGGTATTTATCGGTAGACTTTGGACTCTTAGTAGTCTCTCCAGTACCACCACACGTTGTGCAATC
TGCCGGTGCTAAGGTTCTCGAGCTGCTTGAACGCGTGCTCGGAGAGGTCAATCAGGTTGATGTCG
CACCCCTCACAGATGTCGGCAACCCGGACAGTCACCAGCTTGTCCCAGTGGTTCACCACGAGGTA
CTGGTTGTTGCACATCCAGGCGTCGTTGGGGTTGGCGGGGGCACCCAAGCTGTTCCAGAGCTGGC
GCGAGATGGCCACAAAGTCGTCGTTTTGGGTGTCGAGGTCCTGTCCGCAGGCACCCAAACCACCC
TGGTAGTAGGTGACATCGCCCCACCGGTCGTCGCGTCTCTTGGCGAGCAGACCGTCAGAGTCCAC
GGGCTGCGAAAACGCCAAGGAAGCAAGAGAAGAGAGAGTAGCGAGCGAGAGTTTCATGGTGGGTG
GAGACAAAGCACAGGATGCCAGCCCATTTTATAGCAAAGCCAGGC
Found at i:184046 original size:21 final size:21
Alignment explanation
Indices: 184017--184059 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
184007 TTGGTGGCCG
184017 GCAGAGCCTTCGGAGCGGGCA
1 GCAGAGCCTTCGGAGCGGGCA
* * *
184038 GCAGCGCCTTCGGTGCTGGCA
1 GCAGAGCCTTCGGAGCGGGCA
184059 G
1 G
184060 TTCCCGTTTG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.14, C:0.30, G:0.42, T:0.14
Consensus pattern (21 bp):
GCAGAGCCTTCGGAGCGGGCA
Left flanking sequence: Indices 183517 -- 184016
GAGCCCGAGCCAGTGGGTCTTCTTCTGCGAGAGCAGCGTCCGCAACGCCTCGCGCTGGTCGTGGG
AAAGCAGCTCGAGCGTGGCCACGAGCTCGGGCCGCTTGGGAAGCCCCGGGTTGGGCGACGGCGAC
GGCGCGTGCGCCAGATACGCCACTTCCTTGGGCCGTTTGTCGACAAACTCGCGTTCTAGCAGCGG
GGTGAGCTTTTCTGGTGGTGCTAGTGACGGCGAAGCTGCCGCCGACACCGGGGTGGCCCCGCGGA
TGCCGAGCCCGGCCAACTTGACCGGCAGTTTGAGCTTGTTTTTGAGCCGCAGCCGGTAGTGGGCG
GGGTCTATGGTGATGCGAACGAGAAAGCGGGGTTTCAGTGCGTCCATCTGGTTGATGAACTTGAC
CGAGGGCTTGGAGGGCCGCGGCAGCAGCGACTTGGGCGCCGGCAGCAGCAGTTTGGGAAGCGGCA
GGGCCACCGACTTGGGCACGGGCAGAGCCACCAGCTTGGTGGCCG
Right flanking sequence: Indices 184060 -- 184559
TTCCCGTTTGGGCAGCGGAGGCAGGGTTAGCGGCTTTTCGGGGGGCAGCACCGAGAACATGGGGG
GTAGGGTGGGCAGGAGGAGCGACATTGGCTCGCCCGACAGGTCGTCCTCGCGCTTGGGAAGCGTG
GGCAGCAAGATCGGCGGAAGCTCTCCCGACTCCTGGTAGGCGTGGATGAGGGCGTCCAAGTTCCA
CAGTTTCTTCGGGGCCAGGGCCACTGGCGGTGCTTTGGCCCGCTTGGCGCCCGCCAGGTACACTG
CTGGTGTTCGTTTGGGCTTGGCGGGTTTGCTTTCGCTGAAGATGGACGACTTCATTGTGCCATAG
CGGGCTACGCGGGCGGGTGGAAAATATGTGTGGGGTGCGAGCCGGTGGGACGGCGGCGGGGCGGG
TGGCTGGTGGGAGAGGGTGGGTGGTCTGGGGGCTAGTGGAGTGGTTAGTTTAGAGGTTTTTAGGC
GATTTGGGTGGTGTTTACGTGGGTGGGTGTTGTTTAGGTTTGGGT
Found at i:186447 original size:9 final size:9
Alignment explanation
Indices: 186418--186458 Score: 57
Period size: 9 Copynumber: 4.6 Consensus size: 9
186408 AAGATAAGGG
*
186418 ATTGAAGCA
1 ATTGAAGCC
186427 ATT-AAGGCC
1 ATTGAA-GCC
186436 ATTGAAGCC
1 ATTGAAGCC
186445 ATTGAAGCC
1 ATTGAAGCC
186454 ATTGA
1 ATTGA
186459 GGCTAATGAG
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
8 2 0.07
9 25 0.86
10 2 0.07
ACGTcount: A:0.37, C:0.17, G:0.22, T:0.24
Consensus pattern (9 bp):
ATTGAAGCC
Left flanking sequence: Indices 185918 -- 186417
GTACCTGAAGTTCGACGCCACCAAGCACCAGAAACTCGTGTTCAACTTGCAGGAGCGGTTGTTTA
CGCTTCTGTCGCAGATGGCGGCGCTCGAGTACCACCTGTACTTTGACGGTCTCAAGCGGTTTGTC
CAGATGTCGAAGGACCGCAACGTGCCGCTCGCGGGGCTCACGGCGACCCGGATGTCCCACAAGTT
CCGTGTCCGGTCGCTCGCAGCGATGACGGCCGCTTACCGCAAGTTGGGCGCGGCTTTCATTGAGC
ACGAGCTTGGGCTCGAGGAGGGCGAGTTGGAAAAGTTTTTGCGGAAGGAAAAGCTCGAGGGGTAC
GTGCAAGCGGGCGAGCTCGACTGTGTGGCGTGTCGCCAGCCGCTCCTGAGCCTAGTGGCCAGCCC
GCTGTTTGCGAAGGTGGACATCAAGGGCCAGCGATAATACTAACCAGCAGGAAAGAATTGAAGAT
AGAAAGAAGGATCTAAGCACGGAAGGCTAAGAAAGAAGATAAGGG
Right flanking sequence: Indices 186459 -- 186958
GGCTAATGAGGCTAATGGGGCTATTGACGCGATTGAAGTCATTGAGGCTAATGAGGCAACGATGC
AATGAGGCAAATGAGGCAAATGAGGCAATTGAGGCCATCGAGGCCATTGAGACCAGGTAAGTGTA
TGACAGATGGAAGAAGTTTAAAGAGATTCCGAGAAAAGGGATAGCAAATGAGAGAAGACCAAACG
AATGAAGGCAATTATGACACGGTAACTGCGAAACCCTTGCAACCCCCCAAATACGCCGATGCCAA
CCCTGATGACTGTGGAATGAAACCACACCACATACAAACTACGTTAAAACCACCAGGGCCCTAAC
CATATCTAGACCTCCTATATTAATTCACTATCTAATCGAGCGACGGGCCGATCGCCATGATCGCA
AAGTTGTTTTTGTTGCCGTCATCGGTGTTATCCATGTAGAACTGGATCTTCTCCGCCACCTTGGG
GTCGGAAATGAGGTGGTTGTTCTCCGCGGTGCACTCTCCGAGGTC
Found at i:186468 original size:9 final size:9
Alignment explanation
Indices: 186456--186558 Score: 61
Period size: 9 Copynumber: 11.7 Consensus size: 9
186446 TTGAAGCCAT
186456 TGAGGCTAA
1 TGAGGCTAA
186465 TGAGGCTAA
1 TGAGGCTAA
* *
186474 TGGGGCTAT
1 TGAGGCTAA
* * *
186483 TGACGCGAT
1 TGAGGCTAA
* *
186492 TGAAG-TCAT
1 TGAGGCT-AA
186501 TGAGGCTAA
1 TGAGGCTAA
186510 TGAGGC-AA
1 TGAGGCTAA
* *
186518 CGATGC-AA
1 TGAGGCTAA
*
186526 TGAGGCAAA
1 TGAGGCTAA
*
186535 TGAGGCAAA
1 TGAGGCTAA
186544 TGAGGC-AA
1 TGAGGCTAA
186552 TTGAGGC
1 -TGAGGC
186559 CATCGAGGCC
Statistics
Matches: 77, Mismatches: 13, Indels: 8
0.79 0.13 0.08
Matches are distributed among these distances:
8 14 0.18
9 62 0.81
10 1 0.01
ACGTcount: A:0.32, C:0.14, G:0.34, T:0.20
Consensus pattern (9 bp):
TGAGGCTAA
Left flanking sequence: Indices 185956 -- 186455
TGTTCAACTTGCAGGAGCGGTTGTTTACGCTTCTGTCGCAGATGGCGGCGCTCGAGTACCACCTG
TACTTTGACGGTCTCAAGCGGTTTGTCCAGATGTCGAAGGACCGCAACGTGCCGCTCGCGGGGCT
CACGGCGACCCGGATGTCCCACAAGTTCCGTGTCCGGTCGCTCGCAGCGATGACGGCCGCTTACC
GCAAGTTGGGCGCGGCTTTCATTGAGCACGAGCTTGGGCTCGAGGAGGGCGAGTTGGAAAAGTTT
TTGCGGAAGGAAAAGCTCGAGGGGTACGTGCAAGCGGGCGAGCTCGACTGTGTGGCGTGTCGCCA
GCCGCTCCTGAGCCTAGTGGCCAGCCCGCTGTTTGCGAAGGTGGACATCAAGGGCCAGCGATAAT
ACTAACCAGCAGGAAAGAATTGAAGATAGAAAGAAGGATCTAAGCACGGAAGGCTAAGAAAGAAG
ATAAGGGATTGAAGCAATTAAGGCCATTGAAGCCATTGAAGCCAT
Right flanking sequence: Indices 186559 -- 187058
CATCGAGGCCATTGAGACCAGGTAAGTGTATGACAGATGGAAGAAGTTTAAAGAGATTCCGAGAA
AAGGGATAGCAAATGAGAGAAGACCAAACGAATGAAGGCAATTATGACACGGTAACTGCGAAACC
CTTGCAACCCCCCAAATACGCCGATGCCAACCCTGATGACTGTGGAATGAAACCACACCACATAC
AAACTACGTTAAAACCACCAGGGCCCTAACCATATCTAGACCTCCTATATTAATTCACTATCTAA
TCGAGCGACGGGCCGATCGCCATGATCGCAAAGTTGTTTTTGTTGCCGTCATCGGTGTTATCCAT
GTAGAACTGGATCTTCTCCGCCACCTTGGGGTCGGAAATGAGGTGGTTGTTCTCCGCGGTGCACT
CTCCGAGGTCGACAGGGCCCGCGCGACGCCCGTCCAACTCGTACAAATGGCCGTCCCCACCCTTG
ATGTAAGTAATAAAGTGGAGCTCCACGCTGGCCTCGGCCGGCGGA
Found at i:186567 original size:18 final size:18
Alignment explanation
Indices: 186499--186558 Score: 70
Period size: 18 Copynumber: 3.4 Consensus size: 18
186489 GATTGAAGTC
*
186499 ATTGAGGCTAATGAGGCA
1 ATTGAGGCAAATGAGGCA
* *
186517 A-CGATGC-AATGAGGCA
1 ATTGAGGCAAATGAGGCA
*
186533 AATGAGGCAAATGAGGCA
1 ATTGAGGCAAATGAGGCA
186551 ATTGAGGC
1 ATTGAGGC
186559 CATCGAGGCC
Statistics
Matches: 35, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
16 10 0.29
17 8 0.23
18 17 0.49
ACGTcount: A:0.37, C:0.13, G:0.33, T:0.17
Consensus pattern (18 bp):
ATTGAGGCAAATGAGGCA
Left flanking sequence: Indices 185999 -- 186498
GGCGGCGCTCGAGTACCACCTGTACTTTGACGGTCTCAAGCGGTTTGTCCAGATGTCGAAGGACC
GCAACGTGCCGCTCGCGGGGCTCACGGCGACCCGGATGTCCCACAAGTTCCGTGTCCGGTCGCTC
GCAGCGATGACGGCCGCTTACCGCAAGTTGGGCGCGGCTTTCATTGAGCACGAGCTTGGGCTCGA
GGAGGGCGAGTTGGAAAAGTTTTTGCGGAAGGAAAAGCTCGAGGGGTACGTGCAAGCGGGCGAGC
TCGACTGTGTGGCGTGTCGCCAGCCGCTCCTGAGCCTAGTGGCCAGCCCGCTGTTTGCGAAGGTG
GACATCAAGGGCCAGCGATAATACTAACCAGCAGGAAAGAATTGAAGATAGAAAGAAGGATCTAA
GCACGGAAGGCTAAGAAAGAAGATAAGGGATTGAAGCAATTAAGGCCATTGAAGCCATTGAAGCC
ATTGAGGCTAATGAGGCTAATGGGGCTATTGACGCGATTGAAGTC
Right flanking sequence: Indices 186559 -- 187058
CATCGAGGCCATTGAGACCAGGTAAGTGTATGACAGATGGAAGAAGTTTAAAGAGATTCCGAGAA
AAGGGATAGCAAATGAGAGAAGACCAAACGAATGAAGGCAATTATGACACGGTAACTGCGAAACC
CTTGCAACCCCCCAAATACGCCGATGCCAACCCTGATGACTGTGGAATGAAACCACACCACATAC
AAACTACGTTAAAACCACCAGGGCCCTAACCATATCTAGACCTCCTATATTAATTCACTATCTAA
TCGAGCGACGGGCCGATCGCCATGATCGCAAAGTTGTTTTTGTTGCCGTCATCGGTGTTATCCAT
GTAGAACTGGATCTTCTCCGCCACCTTGGGGTCGGAAATGAGGTGGTTGTTCTCCGCGGTGCACT
CTCCGAGGTCGACAGGGCCCGCGCGACGCCCGTCCAACTCGTACAAATGGCCGTCCCCACCCTTG
ATGTAAGTAATAAAGTGGAGCTCCACGCTGGCCTCGGCCGGCGGA
Found at i:189640 original size:13 final size:13
Alignment explanation
Indices: 189622--189648 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
189612 CTGAATGATA
189622 TTAATTGTAACTG
1 TTAATTGTAACTG
189635 TTAATTGTAACTG
1 TTAATTGTAACTG
189648 T
1 T
189649 GTAACTTTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.07, G:0.15, T:0.48
Consensus pattern (13 bp):
TTAATTGTAACTG
Left flanking sequence: Indices 189122 -- 189621
CTCTACCCGCCGCAGGAGTGGTTGGCGCAGAGAACCCGGCTTTCTGCCGGACCCATCCCCGGGAA
CAACTTCCGCCCGTACTTGGACAACCTGCCGGTGCGTCCCTACGCGGCGGTGCCCACCAACGACC
AGCTCACGTTGTTCATCAACGCCACCATGTACCGCCCGTTCGGCACCAATGTCGGCACCAAGCAG
TGGTACCAGGCGTTTGAGCACGTGATGGCGGGAGCTGGCGGCAAGCCCCACTGGGCCAAGAACTT
CATCGGGTTGGACGGGCCCCACAACTCGGCGGAGAACCAGCAGGGCCAGCTCAGCTACGGGGGCA
AGCCCTTCTACACGATGAACGGGTTTAAGCCGGTGATGGGGGACTGGTTTGGCGAGAACTTGGTC
CGCTTCAATGCGGTGCGACGCCAGACCGATCCCGAAGGCGTGTTTATGTCGGGGAAGCCCTGGGC
TGTCCGGAATGGGATCATTTAGAGTGGGGTAGTAGCTGAATGATA
Right flanking sequence: Indices 189649 -- 190148
GTAACTTTTAGCGGTGTTAACTGTTAACGGTGATAACTGCTAACGGTATCAAGTGCTAACTGTGT
AACTACGTTGACTGGACGGTGAGACTGTGTTAATTGTGTGGAACTAGCCACCTCTGTGGTCGTTT
CAGTGTCTATTTTAGTCGGTCTCGTTTCAACCAATTTCACCTACGTGATCCCTCGTTTCTCTTTG
TCCTCCCTTTGTTCCTGGATCGTCGTACCGTCGTATAGATCACCGCGCCCATCGACGCGTTTCCC
GCCCGGGTTGCCGCGCAATGACCCCACAAACACCGCCAGCAACCCATTCGCCACCCACACAACGC
CCCCCCACGCTCCACTTCCCGTTTCCCCGGCCTTCCCTGGCCCATCCGCCCTCGTACACGTCGTA
ACCACGCGCACACGTGATCTGATCGTTTAAAAATTGAGTAGCGGGCTCTTTTTCACCTCTAGACA
ACATGGGCAAGGTTGGTCAATTACTAGCACACCCAACAGAGCTTG
Found at i:189679 original size:16 final size:16
Alignment explanation
Indices: 189633--189695 Score: 58
Period size: 16 Copynumber: 4.1 Consensus size: 16
189623 TAATTGTAAC
* *
189633 TGTTAATTG-TAACTG
1 TGTTAACTGTTAACGG
* *
189648 TG-TAACTTTTAGCGG
1 TGTTAACTGTTAACGG
189663 TGTTAACTGTTAACGG
1 TGTTAACTGTTAACGG
* *
189679 TGATAACTGCTAACGG
1 TGTTAACTGTTAACGG
189695 T
1 T
189696 ATCAAGTGCT
Statistics
Matches: 38, Mismatches: 8, Indels: 3
0.78 0.16 0.06
Matches are distributed among these distances:
14 4 0.11
15 8 0.21
16 26 0.68
ACGTcount: A:0.25, C:0.13, G:0.24, T:0.38
Consensus pattern (16 bp):
TGTTAACTGTTAACGG
Left flanking sequence: Indices 189133 -- 189632
GCAGGAGTGGTTGGCGCAGAGAACCCGGCTTTCTGCCGGACCCATCCCCGGGAACAACTTCCGCC
CGTACTTGGACAACCTGCCGGTGCGTCCCTACGCGGCGGTGCCCACCAACGACCAGCTCACGTTG
TTCATCAACGCCACCATGTACCGCCCGTTCGGCACCAATGTCGGCACCAAGCAGTGGTACCAGGC
GTTTGAGCACGTGATGGCGGGAGCTGGCGGCAAGCCCCACTGGGCCAAGAACTTCATCGGGTTGG
ACGGGCCCCACAACTCGGCGGAGAACCAGCAGGGCCAGCTCAGCTACGGGGGCAAGCCCTTCTAC
ACGATGAACGGGTTTAAGCCGGTGATGGGGGACTGGTTTGGCGAGAACTTGGTCCGCTTCAATGC
GGTGCGACGCCAGACCGATCCCGAAGGCGTGTTTATGTCGGGGAAGCCCTGGGCTGTCCGGAATG
GGATCATTTAGAGTGGGGTAGTAGCTGAATGATATTAATTGTAAC
Right flanking sequence: Indices 189696 -- 190195
ATCAAGTGCTAACTGTGTAACTACGTTGACTGGACGGTGAGACTGTGTTAATTGTGTGGAACTAG
CCACCTCTGTGGTCGTTTCAGTGTCTATTTTAGTCGGTCTCGTTTCAACCAATTTCACCTACGTG
ATCCCTCGTTTCTCTTTGTCCTCCCTTTGTTCCTGGATCGTCGTACCGTCGTATAGATCACCGCG
CCCATCGACGCGTTTCCCGCCCGGGTTGCCGCGCAATGACCCCACAAACACCGCCAGCAACCCAT
TCGCCACCCACACAACGCCCCCCCACGCTCCACTTCCCGTTTCCCCGGCCTTCCCTGGCCCATCC
GCCCTCGTACACGTCGTAACCACGCGCACACGTGATCTGATCGTTTAAAAATTGAGTAGCGGGCT
CTTTTTCACCTCTAGACAACATGGGCAAGGTTGGTCAATTACTAGCACACCCAACAGAGCTTGTG
GCCGTGGTGCAGCTCTTGTGGTTCCGGTTGCCCATGCACCCGCAG
Found at i:189705 original size:16 final size:16
Alignment explanation
Indices: 189660--189717 Score: 57
Period size: 16 Copynumber: 3.7 Consensus size: 16
189650 TAACTTTTAG
* *
189660 CGGTGTTAACTGTTAA
1 CGGTGATAACTGCTAA
189676 CGGTGATAACTGCTAA
1 CGGTGATAACTGCTAA
*
189692 CGGT-ATCAAGTGCTAA
1 CGGTGAT-AACTGCTAA
*
189708 CTGTG-TAACT
1 CGGTGATAACT
189718 ACGTTGACTG
Statistics
Matches: 35, Mismatches: 5, Indels: 5
0.78 0.11 0.11
Matches are distributed among these distances:
15 5 0.14
16 30 0.86
ACGTcount: A:0.28, C:0.17, G:0.24, T:0.31
Consensus pattern (16 bp):
CGGTGATAACTGCTAA
Left flanking sequence: Indices 189160 -- 189659
GCTTTCTGCCGGACCCATCCCCGGGAACAACTTCCGCCCGTACTTGGACAACCTGCCGGTGCGTC
CCTACGCGGCGGTGCCCACCAACGACCAGCTCACGTTGTTCATCAACGCCACCATGTACCGCCCG
TTCGGCACCAATGTCGGCACCAAGCAGTGGTACCAGGCGTTTGAGCACGTGATGGCGGGAGCTGG
CGGCAAGCCCCACTGGGCCAAGAACTTCATCGGGTTGGACGGGCCCCACAACTCGGCGGAGAACC
AGCAGGGCCAGCTCAGCTACGGGGGCAAGCCCTTCTACACGATGAACGGGTTTAAGCCGGTGATG
GGGGACTGGTTTGGCGAGAACTTGGTCCGCTTCAATGCGGTGCGACGCCAGACCGATCCCGAAGG
CGTGTTTATGTCGGGGAAGCCCTGGGCTGTCCGGAATGGGATCATTTAGAGTGGGGTAGTAGCTG
AATGATATTAATTGTAACTGTTAATTGTAACTGTGTAACTTTTAG
Right flanking sequence: Indices 189718 -- 190217
ACGTTGACTGGACGGTGAGACTGTGTTAATTGTGTGGAACTAGCCACCTCTGTGGTCGTTTCAGT
GTCTATTTTAGTCGGTCTCGTTTCAACCAATTTCACCTACGTGATCCCTCGTTTCTCTTTGTCCT
CCCTTTGTTCCTGGATCGTCGTACCGTCGTATAGATCACCGCGCCCATCGACGCGTTTCCCGCCC
GGGTTGCCGCGCAATGACCCCACAAACACCGCCAGCAACCCATTCGCCACCCACACAACGCCCCC
CCACGCTCCACTTCCCGTTTCCCCGGCCTTCCCTGGCCCATCCGCCCTCGTACACGTCGTAACCA
CGCGCACACGTGATCTGATCGTTTAAAAATTGAGTAGCGGGCTCTTTTTCACCTCTAGACAACAT
GGGCAAGGTTGGTCAATTACTAGCACACCCAACAGAGCTTGTGGCCGTGGTGCAGCTCTTGTGGT
TCCGGTTGCCCATGCACCCGCAGAACCTCAAGGACAGCGCCCCCA
Found at i:195423 original size:12 final size:12
Alignment explanation
Indices: 195384--195425 Score: 50
Period size: 12 Copynumber: 3.5 Consensus size: 12
195374 AGGTGGGTGG
195384 AGGTAGGTGAGGA
1 AGGTAGGT-AGGA
* *
195397 A-GTAGGTGGGG
1 AGGTAGGTAGGA
195408 AGGTAGGTAGGA
1 AGGTAGGTAGGA
195420 AGGTAG
1 AGGTAG
195426 ATGAATGAGT
Statistics
Matches: 24, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
11 3 0.12
12 20 0.83
13 1 0.04
ACGTcount: A:0.29, C:0.00, G:0.55, T:0.17
Consensus pattern (12 bp):
AGGTAGGTAGGA
Left flanking sequence: Indices 194884 -- 195383
CCCAGGGTGTAGCGGTAGCATAGGGGGCTCGTGTAACCTTGCTAAAGGTGGGGAGCCACCCGCAT
AATTAAGGTTTATTTTCGGTTAGGGGGAGACGGCTACAAGGCTCGCGGGGATCGTCGCCTAGGCA
TCGATCGATGGGGAGGGCGGTGTCCGCACGTGTGGCTGGCCTGCTGTTTCGGCGGGTCCCGTGTC
TGCGTGCATGCGGCTGGCCGCGGACACCGTGCTTCTTCACATGGGAACAAAAGTGCTGCCAAAAG
AAAGACCCTACTGCACGTCAAAGTGGGGAGCTGTTGGTGCGAAGCCTAAATGGGACCAATCACGT
GGAGGAGGTAGGGGCTTGGGTGAAACGCCCATTGTCGGCGAGGGAGCGATCTTGTGTTGTGGGGG
TGGGGTAGGTTGACGCTGACGATCTGGATGGATCTGGAGATCGTGTATTGTGATCATGTAAAAAA
AGAAAGTGTGGGGGAATCATATGGGAGAGGTGGGGAGGTGGGTGG
Right flanking sequence: Indices 195426 -- 195925
ATGAATGAGTTGGTATGTGGGGAGGTATGTGGGAAGGTAGGTGTGTAAGTGGGTGTGTGAGTTCG
TATGTGAGTTGGTATGTGGGGAGATAGGTGGGAAGGTAGGTGTGTAGGTGGGTAAGTGAGTCTAA
TAGAAGTGGGTGAGTGATCAGGTTGGGTAGGTGAGTGATCAGATTGGGTAGGTGAGTGACCAGGT
TGGGTGGGTGAGTGATCAGGTTGGGTGGGTATGTGATCAGGTAGGGTTGATCATTGAGTCGAGCT
AGCTGAATAACCAGGTAGAGGCTGGCTGAACCACTCTTTCGCTGTAGTCTGTAGCCTAACACCGC
TCAAACACCCGGTACAAACCCGGAAGATCGGCCACCTCGATAATGTCCCCGCTAAGCAGCTTCGG
CGCCAAAAGCCGCAGCCGGAGCGCAGGGAACAACACGTTCTCCATCAACGCGTTGAGCTCGGGGT
CCACCTCGTGGCTCGGCGCAGGCAAGTACATGAGCGCCACCTGGC
Found at i:195533 original size:52 final size:52
Alignment explanation
Indices: 195390--195535 Score: 150
Period size: 52 Copynumber: 2.8 Consensus size: 52
195380 GTGGAGGTAG
* * * * ** *
195390 GTGAGGAAGTAGGTGGGGAGGTAGGTAGGAAGGTAGATGAATGAGTTGGTAT
1 GTGAGGAGGTATGTGGGGAGGTAGGTGGGAAGGTAGGTGTGTGAGTTCGTAT
* * * *
195442 GTGGGGAGGTATGTGGGAAGGTAGGTGTGTAA-GTGGGTGTGTGAGTTCGTAT
1 GTGAGGAGGTATGTGGGGAGGTAGGTG-GGAAGGTAGGTGTGTGAGTTCGTAT
** *
195494 GTGAGTTGGTATGTGGGGAGATAGGTGGGAAGGTAGGTGTGT
1 GTGAGGAGGTATGTGGGGAGGTAGGTGGGAAGGTAGGTGTGT
195536 AGGTGGGTAA
Statistics
Matches: 74, Mismatches: 18, Indels: 4
0.77 0.19 0.04
Matches are distributed among these distances:
51 3 0.04
52 68 0.92
53 3 0.04
ACGTcount: A:0.22, C:0.01, G:0.50, T:0.27
Consensus pattern (52 bp):
GTGAGGAGGTATGTGGGGAGGTAGGTGGGAAGGTAGGTGTGTGAGTTCGTAT
Left flanking sequence: Indices 194890 -- 195389
GTGTAGCGGTAGCATAGGGGGCTCGTGTAACCTTGCTAAAGGTGGGGAGCCACCCGCATAATTAA
GGTTTATTTTCGGTTAGGGGGAGACGGCTACAAGGCTCGCGGGGATCGTCGCCTAGGCATCGATC
GATGGGGAGGGCGGTGTCCGCACGTGTGGCTGGCCTGCTGTTTCGGCGGGTCCCGTGTCTGCGTG
CATGCGGCTGGCCGCGGACACCGTGCTTCTTCACATGGGAACAAAAGTGCTGCCAAAAGAAAGAC
CCTACTGCACGTCAAAGTGGGGAGCTGTTGGTGCGAAGCCTAAATGGGACCAATCACGTGGAGGA
GGTAGGGGCTTGGGTGAAACGCCCATTGTCGGCGAGGGAGCGATCTTGTGTTGTGGGGGTGGGGT
AGGTTGACGCTGACGATCTGGATGGATCTGGAGATCGTGTATTGTGATCATGTAAAAAAAGAAAG
TGTGGGGGAATCATATGGGAGAGGTGGGGAGGTGGGTGGAGGTAG
Right flanking sequence: Indices 195536 -- 196035
AGGTGGGTAAGTGAGTCTAATAGAAGTGGGTGAGTGATCAGGTTGGGTAGGTGAGTGATCAGATT
GGGTAGGTGAGTGACCAGGTTGGGTGGGTGAGTGATCAGGTTGGGTGGGTATGTGATCAGGTAGG
GTTGATCATTGAGTCGAGCTAGCTGAATAACCAGGTAGAGGCTGGCTGAACCACTCTTTCGCTGT
AGTCTGTAGCCTAACACCGCTCAAACACCCGGTACAAACCCGGAAGATCGGCCACCTCGATAATG
TCCCCGCTAAGCAGCTTCGGCGCCAAAAGCCGCAGCCGGAGCGCAGGGAACAACACGTTCTCCAT
CAACGCGTTGAGCTCGGGGTCCACCTCGTGGCTCGGCGCAGGCAAGTACATGAGCGCCACCTGGC
GCATGATCTGCCGCAAACACGTCTTTTCGTCGGAGTAGTCAACAAGCCCCAACCGGTAGAAAAAC
CGGGGAAGCTTGGCGGGCGACGGCGCCACCTGCTCCAAGAGCATG
Found at i:195550 original size:64 final size:64
Alignment explanation
Indices: 195431--195551 Score: 197
Period size: 64 Copynumber: 1.9 Consensus size: 64
195421 GGTAGATGAA
* * **
195431 TGAGTTGGTATGTGGGGAGGTATGTGGGAAGGTAGGTGTGTAAGTGGGTGTGTGAGTTCGTATG
1 TGAGTTGGTATGTGGGGAGATAGGTGGGAAGGTAGGTGTGTAAGTGGGTAAGTGAGTTCGTATG
*
195495 TGAGTTGGTATGTGGGGAGATAGGTGGGAAGGTAGGTGTGTAGGTGGGTAAGTGAGT
1 TGAGTTGGTATGTGGGGAGATAGGTGGGAAGGTAGGTGTGTAAGTGGGTAAGTGAGT
195552 CTAATAGAAG
Statistics
Matches: 52, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
64 52 1.00
ACGTcount: A:0.19, C:0.01, G:0.50, T:0.31
Consensus pattern (64 bp):
TGAGTTGGTATGTGGGGAGATAGGTGGGAAGGTAGGTGTGTAAGTGGGTAAGTGAGTTCGTATG
Left flanking sequence: Indices 194931 -- 195430
GTGGGGAGCCACCCGCATAATTAAGGTTTATTTTCGGTTAGGGGGAGACGGCTACAAGGCTCGCG
GGGATCGTCGCCTAGGCATCGATCGATGGGGAGGGCGGTGTCCGCACGTGTGGCTGGCCTGCTGT
TTCGGCGGGTCCCGTGTCTGCGTGCATGCGGCTGGCCGCGGACACCGTGCTTCTTCACATGGGAA
CAAAAGTGCTGCCAAAAGAAAGACCCTACTGCACGTCAAAGTGGGGAGCTGTTGGTGCGAAGCCT
AAATGGGACCAATCACGTGGAGGAGGTAGGGGCTTGGGTGAAACGCCCATTGTCGGCGAGGGAGC
GATCTTGTGTTGTGGGGGTGGGGTAGGTTGACGCTGACGATCTGGATGGATCTGGAGATCGTGTA
TTGTGATCATGTAAAAAAAGAAAGTGTGGGGGAATCATATGGGAGAGGTGGGGAGGTGGGTGGAG
GTAGGTGAGGAAGTAGGTGGGGAGGTAGGTAGGAAGGTAGATGAA
Right flanking sequence: Indices 195552 -- 196051
CTAATAGAAGTGGGTGAGTGATCAGGTTGGGTAGGTGAGTGATCAGATTGGGTAGGTGAGTGACC
AGGTTGGGTGGGTGAGTGATCAGGTTGGGTGGGTATGTGATCAGGTAGGGTTGATCATTGAGTCG
AGCTAGCTGAATAACCAGGTAGAGGCTGGCTGAACCACTCTTTCGCTGTAGTCTGTAGCCTAACA
CCGCTCAAACACCCGGTACAAACCCGGAAGATCGGCCACCTCGATAATGTCCCCGCTAAGCAGCT
TCGGCGCCAAAAGCCGCAGCCGGAGCGCAGGGAACAACACGTTCTCCATCAACGCGTTGAGCTCG
GGGTCCACCTCGTGGCTCGGCGCAGGCAAGTACATGAGCGCCACCTGGCGCATGATCTGCCGCAA
ACACGTCTTTTCGTCGGAGTAGTCAACAAGCCCCAACCGGTAGAAAAACCGGGGAAGCTTGGCGG
GCGACGGCGCCACCTGCTCCAAGAGCATGGGCAACAGCGTCACCG
Found at i:195590 original size:21 final size:21
Alignment explanation
Indices: 195564--195667 Score: 147
Period size: 21 Copynumber: 5.0 Consensus size: 21
195554 AATAGAAGTG
195564 GGTGAGTGATCAGGTTGGGTA
1 GGTGAGTGATCAGGTTGGGTA
*
195585 GGTGAGTGATCAGATTGGGTA
1 GGTGAGTGATCAGGTTGGGTA
* *
195606 GGTGAGTGACCAGGTTGGGTG
1 GGTGAGTGATCAGGTTGGGTA
*
195627 GGTGAGTGATCAGGTTGGGTG
1 GGTGAGTGATCAGGTTGGGTA
*
195648 GGT-ATGTGATCAGGTAGGGT
1 GGTGA-GTGATCAGGTTGGGT
195668 TGATCATTGA
Statistics
Matches: 76, Mismatches: 6, Indels: 2
0.90 0.07 0.02
Matches are distributed among these distances:
20 1 0.01
21 75 0.99
ACGTcount: A:0.18, C:0.06, G:0.48, T:0.28
Consensus pattern (21 bp):
GGTGAGTGATCAGGTTGGGTA
Left flanking sequence: Indices 195064 -- 195563
GGCGGGTCCCGTGTCTGCGTGCATGCGGCTGGCCGCGGACACCGTGCTTCTTCACATGGGAACAA
AAGTGCTGCCAAAAGAAAGACCCTACTGCACGTCAAAGTGGGGAGCTGTTGGTGCGAAGCCTAAA
TGGGACCAATCACGTGGAGGAGGTAGGGGCTTGGGTGAAACGCCCATTGTCGGCGAGGGAGCGAT
CTTGTGTTGTGGGGGTGGGGTAGGTTGACGCTGACGATCTGGATGGATCTGGAGATCGTGTATTG
TGATCATGTAAAAAAAGAAAGTGTGGGGGAATCATATGGGAGAGGTGGGGAGGTGGGTGGAGGTA
GGTGAGGAAGTAGGTGGGGAGGTAGGTAGGAAGGTAGATGAATGAGTTGGTATGTGGGGAGGTAT
GTGGGAAGGTAGGTGTGTAAGTGGGTGTGTGAGTTCGTATGTGAGTTGGTATGTGGGGAGATAGG
TGGGAAGGTAGGTGTGTAGGTGGGTAAGTGAGTCTAATAGAAGTG
Right flanking sequence: Indices 195668 -- 196167
TGATCATTGAGTCGAGCTAGCTGAATAACCAGGTAGAGGCTGGCTGAACCACTCTTTCGCTGTAG
TCTGTAGCCTAACACCGCTCAAACACCCGGTACAAACCCGGAAGATCGGCCACCTCGATAATGTC
CCCGCTAAGCAGCTTCGGCGCCAAAAGCCGCAGCCGGAGCGCAGGGAACAACACGTTCTCCATCA
ACGCGTTGAGCTCGGGGTCCACCTCGTGGCTCGGCGCAGGCAAGTACATGAGCGCCACCTGGCGC
ATGATCTGCCGCAAACACGTCTTTTCGTCGGAGTAGTCAACAAGCCCCAACCGGTAGAAAAACCG
GGGAAGCTTGGCGGGCGACGGCGCCACCTGCTCCAAGAGCATGGGCAACAGCGTCACCGCGCCAT
TGTCAAGCCCCAAGTTGAAGTACTCGGCAAACATCGGCGCCATCGCCGTGATGTTGGCAATCACG
TCGGCAAGGGGCACGTCCTCGCCGGCCATCGGCTCCAAGATCGCG
Found at i:197909 original size:11 final size:11
Alignment explanation
Indices: 197874--198003 Score: 88
Period size: 11 Copynumber: 12.6 Consensus size: 11
197864 TTCACCCTTG
*
197874 ACACACTGATA
1 ACACCCTGATA
*
197885 CACATCC-GAT-
1 -ACACCCTGATA
197895 ACACCCTGATA
1 ACACCCTGATA
197906 ACACCCTG-T-
1 ACACCCTGATA
197915 -CTACCCTGATA
1 AC-ACCCTGATA
197926 ACACCCTG-T-
1 ACACCCTGATA
197935 -CTACCCTGATA
1 AC-ACCCTGATA
197946 ACACCCTGAT-
1 ACACCCTGATA
*
197956 -TACCCTGATA
1 ACACCCTGATA
*
197966 ACACCCTGGT-
1 ACACCCTGATA
197976 ACACCC-GATA
1 ACACCCTGATA
197986 CACACCC-GATA
1 -ACACCCTGATA
*
197997 CCACCCT
1 ACACCCT
198004 TACTAGCCCA
Statistics
Matches: 95, Mismatches: 8, Indels: 31
0.71 0.06 0.23
Matches are distributed among these distances:
8 2 0.02
9 27 0.28
10 18 0.19
11 42 0.44
12 6 0.06
ACGTcount: A:0.30, C:0.40, G:0.10, T:0.20
Consensus pattern (11 bp):
ACACCCTGATA
Left flanking sequence: Indices 197374 -- 197873
AGGGCCTCGCCGCGGAACCCGTAGGTGCCGATGGTCTGCAAGTCGTCGAACGTCGCGAGCTTCAG
CGTGGCAAACCGCTGGCACAACAACGGGAGGTCGTCCCGCGCGATCCCGCTGCCGTCGTCGCTGA
TCTTCATCATCTTGAGCCCGCCGTCCTTGACCACGATCTCGATGTGGCGGGCTCCAGCGTCGATA
GCGTTCTCCAACATCTCCTTGAGGGCATTGGCGGGCCGCACAATGACTTCGCCTGCGGCAATGCG
GTTGATCACCTGCTCGCTGAGCGGTTGGATGGCCATGGACGCGTCGCACTGCGATCGGAACTAAC
TACAAGGACTACTAGGAACAGTCCACTGGTCAGCTAGGTATTGCTAGGTGTGCTAGGTATCGCTT
GGAACCAGCTTGTTGAACAGCTTAGCTACTGGCTTTACACGCACGAGGTTCTATTGGCATTGGTC
GCTACATTGTTCGCTCCTTTGATAACCGCCCGTGGTTCACCCTTG
Right flanking sequence: Indices 198004 -- 198503
TACTAGCCCATCCTTAATTCACACCATCCACATGTCCAACCAACGCAATGACATCGTCCACGACT
ACGACAGCATCCAGGAGAAGCTCTCCAAGGGCGCCACCGACACCCTCAGCGCCCGCGACCTCGAG
AAGCACTTGATCGACGACCTCGAGCAGGCATGGCTGCGCACCCAGAAGACCAAGGACATGTACTT
GTACTCCAAGGACTCGCACGCGGTCAAGGGGGTGCTGAAGTTTGCCGCCGACAACGCCCAGAACC
TCAAGTTTTCCGGCGAGGGCCTCACCATCACCCCTACCGAGGTGGTGAAGATGCTCAAGCGGTAC
ATGGGGAACCCCGAGGAGATCGCCGAGGACGAGGAGCCCACAGAGGCGATGTTCAACATGAACAA
CTGGCTCGCGCTCGGGACGCTTTTCTACCAGCACTCGCCTCGTCCCGTCGGGATCGACTTTTTGA
ACGGTCCCCTCGAGACCGAGCGAAGGCGTGTGGGGCCCCGCACAC
Found at i:197922 original size:20 final size:20
Alignment explanation
Indices: 197897--197973 Score: 138
Period size: 20 Copynumber: 3.9 Consensus size: 20
197887 CATCCGATAC
197897 ACCCTGATAACACCCTGTCT
1 ACCCTGATAACACCCTGTCT
197917 ACCCTGATAACACCCTGTCT
1 ACCCTGATAACACCCTGTCT
197937 ACCCTGATAACACCCTGAT-T
1 ACCCTGATAACACCCTG-TCT
197957 ACCCTGATAACACCCTG
1 ACCCTGATAACACCCTG
197974 GTACACCCGA
Statistics
Matches: 56, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
20 55 0.98
21 1 0.02
ACGTcount: A:0.27, C:0.39, G:0.10, T:0.23
Consensus pattern (20 bp):
ACCCTGATAACACCCTGTCT
Left flanking sequence: Indices 197397 -- 197896
GGTGCCGATGGTCTGCAAGTCGTCGAACGTCGCGAGCTTCAGCGTGGCAAACCGCTGGCACAACA
ACGGGAGGTCGTCCCGCGCGATCCCGCTGCCGTCGTCGCTGATCTTCATCATCTTGAGCCCGCCG
TCCTTGACCACGATCTCGATGTGGCGGGCTCCAGCGTCGATAGCGTTCTCCAACATCTCCTTGAG
GGCATTGGCGGGCCGCACAATGACTTCGCCTGCGGCAATGCGGTTGATCACCTGCTCGCTGAGCG
GTTGGATGGCCATGGACGCGTCGCACTGCGATCGGAACTAACTACAAGGACTACTAGGAACAGTC
CACTGGTCAGCTAGGTATTGCTAGGTGTGCTAGGTATCGCTTGGAACCAGCTTGTTGAACAGCTT
AGCTACTGGCTTTACACGCACGAGGTTCTATTGGCATTGGTCGCTACATTGTTCGCTCCTTTGAT
AACCGCCCGTGGTTCACCCTTGACACACTGATACACATCCGATAC
Right flanking sequence: Indices 197974 -- 198473
GTACACCCGATACACACCCGATACCACCCTTACTAGCCCATCCTTAATTCACACCATCCACATGT
CCAACCAACGCAATGACATCGTCCACGACTACGACAGCATCCAGGAGAAGCTCTCCAAGGGCGCC
ACCGACACCCTCAGCGCCCGCGACCTCGAGAAGCACTTGATCGACGACCTCGAGCAGGCATGGCT
GCGCACCCAGAAGACCAAGGACATGTACTTGTACTCCAAGGACTCGCACGCGGTCAAGGGGGTGC
TGAAGTTTGCCGCCGACAACGCCCAGAACCTCAAGTTTTCCGGCGAGGGCCTCACCATCACCCCT
ACCGAGGTGGTGAAGATGCTCAAGCGGTACATGGGGAACCCCGAGGAGATCGCCGAGGACGAGGA
GCCCACAGAGGCGATGTTCAACATGAACAACTGGCTCGCGCTCGGGACGCTTTTCTACCAGCACT
CGCCTCGTCCCGTCGGGATCGACTTTTTGAACGGTCCCCTCGAGA
Found at i:197985 original size:20 final size:20
Alignment explanation
Indices: 197894--197992 Score: 116
Period size: 20 Copynumber: 4.9 Consensus size: 20
197884 ACACATCCGA
197894 TACACCCTGATAACACCCTG
1 TACACCCTGATAACACCCTG
197914 T-CTACCCTGATAACACCCTG
1 TAC-ACCCTGATAACACCCTG
197934 T-CTACCCTGATAACACCCTG
1 TAC-ACCCTGATAACACCCTG
*
197954 -ATTACCCTGATAACACCCTGG
1 TA-CACCCTGATAACACCCT-G
197975 TACACCC-GATACACACCC
1 TACACCCTGATA-ACACCC
197993 GATACCACCC
Statistics
Matches: 71, Mismatches: 2, Indels: 11
0.85 0.02 0.13
Matches are distributed among these distances:
19 1 0.01
20 58 0.82
21 11 0.15
22 1 0.01
ACGTcount: A:0.28, C:0.40, G:0.10, T:0.21
Consensus pattern (20 bp):
TACACCCTGATAACACCCTG
Left flanking sequence: Indices 197394 -- 197893
GTAGGTGCCGATGGTCTGCAAGTCGTCGAACGTCGCGAGCTTCAGCGTGGCAAACCGCTGGCACA
ACAACGGGAGGTCGTCCCGCGCGATCCCGCTGCCGTCGTCGCTGATCTTCATCATCTTGAGCCCG
CCGTCCTTGACCACGATCTCGATGTGGCGGGCTCCAGCGTCGATAGCGTTCTCCAACATCTCCTT
GAGGGCATTGGCGGGCCGCACAATGACTTCGCCTGCGGCAATGCGGTTGATCACCTGCTCGCTGA
GCGGTTGGATGGCCATGGACGCGTCGCACTGCGATCGGAACTAACTACAAGGACTACTAGGAACA
GTCCACTGGTCAGCTAGGTATTGCTAGGTGTGCTAGGTATCGCTTGGAACCAGCTTGTTGAACAG
CTTAGCTACTGGCTTTACACGCACGAGGTTCTATTGGCATTGGTCGCTACATTGTTCGCTCCTTT
GATAACCGCCCGTGGTTCACCCTTGACACACTGATACACATCCGA
Right flanking sequence: Indices 197993 -- 198492
GATACCACCCTTACTAGCCCATCCTTAATTCACACCATCCACATGTCCAACCAACGCAATGACAT
CGTCCACGACTACGACAGCATCCAGGAGAAGCTCTCCAAGGGCGCCACCGACACCCTCAGCGCCC
GCGACCTCGAGAAGCACTTGATCGACGACCTCGAGCAGGCATGGCTGCGCACCCAGAAGACCAAG
GACATGTACTTGTACTCCAAGGACTCGCACGCGGTCAAGGGGGTGCTGAAGTTTGCCGCCGACAA
CGCCCAGAACCTCAAGTTTTCCGGCGAGGGCCTCACCATCACCCCTACCGAGGTGGTGAAGATGC
TCAAGCGGTACATGGGGAACCCCGAGGAGATCGCCGAGGACGAGGAGCCCACAGAGGCGATGTTC
AACATGAACAACTGGCTCGCGCTCGGGACGCTTTTCTACCAGCACTCGCCTCGTCCCGTCGGGAT
CGACTTTTTGAACGGTCCCCTCGAGACCGAGCGAAGGCGTGTGGG
Found at i:203492 original size:16 final size:16
Alignment explanation
Indices: 203453--203508 Score: 67
Period size: 16 Copynumber: 3.5 Consensus size: 16
203443 GGGTGTGCAA
203453 TTCAGTGTGGATGGTG
1 TTCAGTGTGGATGGTG
**
203469 TTTTGTGTGGATGGTG
1 TTCAGTGTGGATGGTG
* *
203485 TTCAGTGTAGACGGTG
1 TTCAGTGTGGATGGTG
*
203501 TTCTGTGT
1 TTCAGTGT
203509 AGACGGTATT
Statistics
Matches: 33, Mismatches: 7, Indels: 0
0.82 0.17 0.00
Matches are distributed among these distances:
16 33 1.00
ACGTcount: A:0.11, C:0.07, G:0.39, T:0.43
Consensus pattern (16 bp):
TTCAGTGTGGATGGTG
Left flanking sequence: Indices 202953 -- 203452
CATCTACGCCAACGGCGGGTCGCGCGACTTGCTGGTGGCCGCCGAGCTCGGCACCGGGGCCGCGG
CGGGAGCGCTTGCGGGGACGCTCACCACGCCGTTGGACGTGATCAAAACACGCATTCAAACCGCC
ACCACCACCCCCACCGATGGCAAGCTCTTACAAACCGCCAACCCGCTCACGCGGATGGTGATGCG
GTCGACGACGGCGCGGGCGATGATGTCGATCTACGCCACCGAGGGGGTGTTTGGGGTGTTTTCCG
GGGTGGGGCCCCGGTGCATTTGGACCGGGGTGCAGAGCTCGATCATGTTGCTCCTTTACCAGGTG
TTTTTGAAGCGATTAGACATGTACTTGGACGACGACCGGTTGTAAATATTTATTGTATCATAGGG
AATAGCATAATAGAAGGATCATATTGCTAGATGGGTGTAGAGATGGGTGTGTGTGAGGGATGACT
GGGTGACTACGTTATAGACGATTGAGTGTGGAATTGGGTGTGCAA
Right flanking sequence: Indices 203509 -- 204008
AGACGGTATTCTGTGTAGACGGTGAATTGTGGGGTACATAGACCGATTCCTTGGTCTAGACCTAG
CGTGGAAAGACGGCCACCGTGCGCAAGCGACTCGGTTAATGACACTAGAGATCAATCCATAGCAG
ATGCGACAGAAGCATTGGCGCATAAACGTTTTACCTCTACTAACTTTAGCTAACTCTAGTTCCCA
CCACGTTCTTTCCCCTTGCGTTCACTCGTTGTGTGTACCATATGTGTGTACCTTTGACACCCTAC
CGTCAACCAGCAAACACACCACCTGTCGCCAGGCCACAACGGTTGCCTGACACAATAGCGATCTG
ACGAACTGATTATAAATGGATGTGGCGGTAATAGCACTTCGCCCGCATGCGTCCCGCAGTTGCCC
GTTCCGTATCCCTCCACGACAGCGAATACAAGCACTACAACCACCCCGAGCCATTCACCGCCTTC
TACACACCACAACCACGCTTCCCACCACAACCGACCACCCCCCGT
Found at i:203509 original size:16 final size:16
Alignment explanation
Indices: 203465--203532 Score: 91
Period size: 16 Copynumber: 4.2 Consensus size: 16
203455 CAGTGTGGAT
* * *
203465 GGTGTTTTGTGTGGAT
1 GGTGTTCTGTGTAGAC
*
203481 GGTGTTCAGTGTAGAC
1 GGTGTTCTGTGTAGAC
203497 GGTGTTCTGTGTAGAC
1 GGTGTTCTGTGTAGAC
*
203513 GGTATTCTGTGTAGAC
1 GGTGTTCTGTGTAGAC
203529 GGTG
1 GGTG
203533 AATTGTGGGG
Statistics
Matches: 45, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 45 1.00
ACGTcount: A:0.13, C:0.09, G:0.40, T:0.38
Consensus pattern (16 bp):
GGTGTTCTGTGTAGAC
Left flanking sequence: Indices 202965 -- 203464
CGGCGGGTCGCGCGACTTGCTGGTGGCCGCCGAGCTCGGCACCGGGGCCGCGGCGGGAGCGCTTG
CGGGGACGCTCACCACGCCGTTGGACGTGATCAAAACACGCATTCAAACCGCCACCACCACCCCC
ACCGATGGCAAGCTCTTACAAACCGCCAACCCGCTCACGCGGATGGTGATGCGGTCGACGACGGC
GCGGGCGATGATGTCGATCTACGCCACCGAGGGGGTGTTTGGGGTGTTTTCCGGGGTGGGGCCCC
GGTGCATTTGGACCGGGGTGCAGAGCTCGATCATGTTGCTCCTTTACCAGGTGTTTTTGAAGCGA
TTAGACATGTACTTGGACGACGACCGGTTGTAAATATTTATTGTATCATAGGGAATAGCATAATA
GAAGGATCATATTGCTAGATGGGTGTAGAGATGGGTGTGTGTGAGGGATGACTGGGTGACTACGT
TATAGACGATTGAGTGTGGAATTGGGTGTGCAATTCAGTGTGGAT
Right flanking sequence: Indices 203533 -- 204032
AATTGTGGGGTACATAGACCGATTCCTTGGTCTAGACCTAGCGTGGAAAGACGGCCACCGTGCGC
AAGCGACTCGGTTAATGACACTAGAGATCAATCCATAGCAGATGCGACAGAAGCATTGGCGCATA
AACGTTTTACCTCTACTAACTTTAGCTAACTCTAGTTCCCACCACGTTCTTTCCCCTTGCGTTCA
CTCGTTGTGTGTACCATATGTGTGTACCTTTGACACCCTACCGTCAACCAGCAAACACACCACCT
GTCGCCAGGCCACAACGGTTGCCTGACACAATAGCGATCTGACGAACTGATTATAAATGGATGTG
GCGGTAATAGCACTTCGCCCGCATGCGTCCCGCAGTTGCCCGTTCCGTATCCCTCCACGACAGCG
AATACAAGCACTACAACCACCCCGAGCCATTCACCGCCTTCTACACACCACAACCACGCTTCCCA
CCACAACCGACCACCCCCCGTCACCCCGTCACCCGAAAAACCGTC
Found at i:203525 original size:32 final size:32
Alignment explanation
Indices: 203452--203532 Score: 99
Period size: 32 Copynumber: 2.5 Consensus size: 32
203442 TGGGTGTGCA
* * * * *
203452 ATTCAGTGTGGATGGTGTTTTGTGTGGATGGT
1 ATTCAGTGTAGACGGTGTTCTGTGTAGACGGT
*
203484 GTTCAGTGTAGACGGTGTTCTGTGTAGACGGT
1 ATTCAGTGTAGACGGTGTTCTGTGTAGACGGT
*
203516 ATTCTGTGTAGACGGTG
1 ATTCAGTGTAGACGGTG
203533 AATTGTGGGG
Statistics
Matches: 41, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
32 41 1.00
ACGTcount: A:0.15, C:0.09, G:0.38, T:0.38
Consensus pattern (32 bp):
ATTCAGTGTAGACGGTGTTCTGTGTAGACGGT
Left flanking sequence: Indices 202952 -- 203451
CCATCTACGCCAACGGCGGGTCGCGCGACTTGCTGGTGGCCGCCGAGCTCGGCACCGGGGCCGCG
GCGGGAGCGCTTGCGGGGACGCTCACCACGCCGTTGGACGTGATCAAAACACGCATTCAAACCGC
CACCACCACCCCCACCGATGGCAAGCTCTTACAAACCGCCAACCCGCTCACGCGGATGGTGATGC
GGTCGACGACGGCGCGGGCGATGATGTCGATCTACGCCACCGAGGGGGTGTTTGGGGTGTTTTCC
GGGGTGGGGCCCCGGTGCATTTGGACCGGGGTGCAGAGCTCGATCATGTTGCTCCTTTACCAGGT
GTTTTTGAAGCGATTAGACATGTACTTGGACGACGACCGGTTGTAAATATTTATTGTATCATAGG
GAATAGCATAATAGAAGGATCATATTGCTAGATGGGTGTAGAGATGGGTGTGTGTGAGGGATGAC
TGGGTGACTACGTTATAGACGATTGAGTGTGGAATTGGGTGTGCA
Right flanking sequence: Indices 203533 -- 204032
AATTGTGGGGTACATAGACCGATTCCTTGGTCTAGACCTAGCGTGGAAAGACGGCCACCGTGCGC
AAGCGACTCGGTTAATGACACTAGAGATCAATCCATAGCAGATGCGACAGAAGCATTGGCGCATA
AACGTTTTACCTCTACTAACTTTAGCTAACTCTAGTTCCCACCACGTTCTTTCCCCTTGCGTTCA
CTCGTTGTGTGTACCATATGTGTGTACCTTTGACACCCTACCGTCAACCAGCAAACACACCACCT
GTCGCCAGGCCACAACGGTTGCCTGACACAATAGCGATCTGACGAACTGATTATAAATGGATGTG
GCGGTAATAGCACTTCGCCCGCATGCGTCCCGCAGTTGCCCGTTCCGTATCCCTCCACGACAGCG
AATACAAGCACTACAACCACCCCGAGCCATTCACCGCCTTCTACACACCACAACCACGCTTCCCA
CCACAACCGACCACCCCCCGTCACCCCGTCACCCGAAAAACCGTC
Found at i:206500 original size:24 final size:24
Alignment explanation
Indices: 206413--206485 Score: 94
Period size: 24 Copynumber: 3.1 Consensus size: 24
206403 CCCGGCGGAG
* *
206413 GGCCC-TGTTGGTACCCCTGGGGC
1 GGCCCTTGCTGGTAGCCCTGGGGC
* *
206436 GGTCCTTGCTGGTAGCCCTGGGGA
1 GGCCCTTGCTGGTAGCCCTGGGGC
*
206460 GGCCCTTGTTGGTAGCCCTGGGGC
1 GGCCCTTGCTGGTAGCCCTGGGGC
206484 GG
1 GG
206486 GCCTCCGTGG
Statistics
Matches: 42, Mismatches: 7, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
23 4 0.10
24 38 0.90
ACGTcount: A:0.05, C:0.29, G:0.42, T:0.23
Consensus pattern (24 bp):
GGCCCTTGCTGGTAGCCCTGGGGC
Left flanking sequence: Indices 205913 -- 206412
GATCATGTGCATGTCGTCGTCCACGATGTGCGAGGTGCGCTCGTAGTCCAACGGGTAGATGACCT
CGTCGTAGCCCTCGTCCTCGTCGCCGTCCAAGTCCTTGGTGATGCCGCCGTGGCCCGAGTAGTGG
AACACCAACGAGTCGTTGGGCCGCGCGTCCTTGACCAACCACTGCATCGCCCGCATGATGTTGTC
GCGGGTGGGGATCTTGCCCATTTCGCGCTGGTCGTCGGTCAAGATCACCATGTCGTCGTACAGGT
AGCCAAAGCGCTCGTTGAGGAAACGAGACATGTTTTTGACGTCGTTGACACACCCACGCAACTCG
TTCTTGGTGCCGAAGTAGTTGATGCCCACCAACAACGCCTTCTTGCGGCCCTGACAGTTGGAGTA
CTGGTACGAGAAGTTGTTGTTGGGCCCGTAGGTCTGGGTGCCCTGCGGGGGCATTCCGCCGCCAC
GGCCGCCCTGGGGGGGTCCGCCGCGGTAACCCTGGCCCGGCGGAG
Right flanking sequence: Indices 206486 -- 206985
GCCTCCGTGGTAGCCGCCGCCCGGGAAGCCGCCAGAGTTGCCGGGAAACCCGCCGCGCTGCTGGG
GCGGGGGCGGCCCGCCGTACCCACCGGGGGGAGGCCCCCCATATCCTCCATTGTATCCGTAAGAC
ATGTTCGTTGATTAGGTGGAGACGCACTGAAATTCGGTAAACGCTGTTGCTGCAGGTCCGGGCTC
AAAAGAGAAGGAGTGCGCGGTGGTGGGACGGTAGGTGGGAACGGAAGGTGGGTTGCTGGTGGGGT
TGCTGGCGGGGGCTAGCGGGAATTAAGACGGCATTGGGCTGCTACTGATAGTCTACTTGGTGGCC
AGGGAACTGGTCTTGGCATTTCTTGGTGACCCGAGGAGATCTCACTGCCTCAGTAAAGCTAAGTT
CGAGTCGCGTAACCGCGTTGATCTGGTAGTTACACTATGCTGTCCCATCTAATTCAACTAATGAA
AAACTATACAACCTAACAATCGATCCACGATACTATGACCATAAA
Found at i:208223 original size:15 final size:15
Alignment explanation
Indices: 208194--208288 Score: 111
Period size: 15 Copynumber: 6.3 Consensus size: 15
208184 GATGGAGCTG
*
208194 AGTCTAAGAACTACC
1 AGTCTGAGAACTACC
* *
208209 AGCCTGAGAAATACC
1 AGTCTGAGAACTACC
208224 AGTCTGAGAACTACC
1 AGTCTGAGAACTACC
** *
208239 AGAGTGAAAACTACC
1 AGTCTGAGAACTACC
208254 AGTCTGAGAACTACC
1 AGTCTGAGAACTACC
*
208269 AGTCTGA-ACACAACC
1 AGTCTGAGA-ACTACC
208284 AGTCT
1 AGTCT
208289 CTGTCCTCCC
Statistics
Matches: 67, Mismatches: 12, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
14 1 0.01
15 66 0.99
ACGTcount: A:0.38, C:0.26, G:0.18, T:0.18
Consensus pattern (15 bp):
AGTCTGAGAACTACC
Left flanking sequence: Indices 207694 -- 208193
GCCCGCCAAACGCCGCAGCATGCTCATCGACCCCAACAAGGTGTTGGAGGACATCTATGACGTCA
GCGAGGACGAGGAGCCGCAGGAGAAGCCCGACCCGCCGGCAGCGGTGCCGCAGTTTGTCATCAAC
CACGACTTCGACGAGAAAAAGGCCCCCGCGGTGCCGCTGTTTGTCATCAACGCCGACTACGACAA
CGAGGTGCCGGAGCTGAAGGTGTGGGGGAAGCCCGCGGAGCAGGCCGGGCCGCCTGCGATTGTGG
TGGAGCAGGCGGGGTCTCCGAAGGTGCCGCAGTACGGAGCCCGGCGCGAGGGCAACGAGGGCTAC
GACTACGGGAACGAAGGCTATGGAGACGAGCCGTATGGGAACGAGCAATATGGAAACGAGCAGTC
GCGCTATGGAGACGAGCAAGGAAACAAGCAGTCAGGTTTCGCAGGCTACGACCAGTCTGAGCCCC
GTGGCATTGAGGCTGAATCTGGATACAGCCATGGTGATGGAGCTG
Right flanking sequence: Indices 208289 -- 208788
CTGTCCTCCCACCAGTCTGAATCTTACAACAACTCTCAGTCCTACAACCATTCTCACCAGCCTCC
TTCCCAACCCTCCGACCACGAGGACCACGGCTACCACGAGCAAAAGAGCTACGTCAGCTACTACA
GCGAGCCGGAAGAACCCGAGCCCACAGAACTCAGCGACCTCAGCAGAGAGCTCGACCAAACCAAC
TCGGACCACCCCGGCTCCTACCGCAACTCCTACGACTCGCACGTGTCCCACGTGTCATCGTCGTC
CCGCGAGCACGACGACACCGTCCAGCTCGCGTCGGACAACTCGAGCAAGACCCTCGACCGCGAGC
CAGCCACCAGCCAGTCCGCTGCCAGCCAGCCCGCCTCCACCGAGCCCGGCCCGCTCAAGCTCTCG
TTCGACGACGCTCCCCTGGACTCGGACTCGGACGACGACCGGTGGGGCCACCAGTCCGACGACGA
CTGGGGCCACCAGCTGGACTCGGACGACGACGACGCAGGCGAGGA
Found at i:208331 original size:36 final size:33
Alignment explanation
Indices: 208266--208331 Score: 78
Period size: 36 Copynumber: 1.9 Consensus size: 33
208256 TCTGAGAACT
* * *
208266 ACCAGTCTGAACACAACCAGTCTCTGTCCTCCC
1 ACCAGTCTGAACACAACAACTCTCAGTCCTCCC
208299 ACCAGTCTGAATCTTACAACAACTCTCAGTCCT
1 ACCAGTCTGAA-C--ACAACAACTCTCAGTCCT
208332 ACAACCATTC
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
33 11 0.41
34 1 0.04
36 15 0.56
ACGTcount: A:0.27, C:0.38, G:0.11, T:0.24
Consensus pattern (33 bp):
ACCAGTCTGAACACAACAACTCTCAGTCCTCCC
Left flanking sequence: Indices 207766 -- 208265
CGAGGAGCCGCAGGAGAAGCCCGACCCGCCGGCAGCGGTGCCGCAGTTTGTCATCAACCACGACT
TCGACGAGAAAAAGGCCCCCGCGGTGCCGCTGTTTGTCATCAACGCCGACTACGACAACGAGGTG
CCGGAGCTGAAGGTGTGGGGGAAGCCCGCGGAGCAGGCCGGGCCGCCTGCGATTGTGGTGGAGCA
GGCGGGGTCTCCGAAGGTGCCGCAGTACGGAGCCCGGCGCGAGGGCAACGAGGGCTACGACTACG
GGAACGAAGGCTATGGAGACGAGCCGTATGGGAACGAGCAATATGGAAACGAGCAGTCGCGCTAT
GGAGACGAGCAAGGAAACAAGCAGTCAGGTTTCGCAGGCTACGACCAGTCTGAGCCCCGTGGCAT
TGAGGCTGAATCTGGATACAGCCATGGTGATGGAGCTGAGTCTAAGAACTACCAGCCTGAGAAAT
ACCAGTCTGAGAACTACCAGAGTGAAAACTACCAGTCTGAGAACT
Right flanking sequence: Indices 208332 -- 208831
ACAACCATTCTCACCAGCCTCCTTCCCAACCCTCCGACCACGAGGACCACGGCTACCACGAGCAA
AAGAGCTACGTCAGCTACTACAGCGAGCCGGAAGAACCCGAGCCCACAGAACTCAGCGACCTCAG
CAGAGAGCTCGACCAAACCAACTCGGACCACCCCGGCTCCTACCGCAACTCCTACGACTCGCACG
TGTCCCACGTGTCATCGTCGTCCCGCGAGCACGACGACACCGTCCAGCTCGCGTCGGACAACTCG
AGCAAGACCCTCGACCGCGAGCCAGCCACCAGCCAGTCCGCTGCCAGCCAGCCCGCCTCCACCGA
GCCCGGCCCGCTCAAGCTCTCGTTCGACGACGCTCCCCTGGACTCGGACTCGGACGACGACCGGT
GGGGCCACCAGTCCGACGACGACTGGGGCCACCAGCTGGACTCGGACGACGACGACGCAGGCGAG
GACCCCACGCCCGAGCTCAACATCGTCAAGTCGCTGGAGTCCGCA
Found at i:212327 original size:15 final size:13
Alignment explanation
Indices: 212285--212320 Score: 54
Period size: 13 Copynumber: 2.8 Consensus size: 13
212275 TACAGATACG
* *
212285 CCTATTCAGTCAC
1 CCTAATCAGACAC
212298 CCTAATCAGACAC
1 CCTAATCAGACAC
212311 CCTAATCAGA
1 CCTAATCAGA
212321 TACACCCAAC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.33, C:0.36, G:0.08, T:0.22
Consensus pattern (13 bp):
CCTAATCAGACAC
Left flanking sequence: Indices 211785 -- 212284
TGTTGGAGGTAGCGGAACTCGCGGATAAGCGTTTTGTTCATGTTCTCGCCAATCACCAGCGTCGT
CAACGGGCCGGCGTACAGGGCAAGAAAGTTGCCGTAGTCGGTGGCCAGCAATTGCAACTTGACGT
CGTCGAGGGTGTCGCACTGGGTCAAGTTGACGTACTGGTTCGCGGCAAGAAGGCCTGCCTTGTAA
CCGCGGGTTACTCCTTCCAAGTACCCGTAGTTGATGTTGAAAAAGAGCCCCTCCATGGTTGCGTG
GTCGTCGTGGTGGGTGGTTATTTGGCTGGTGCGAATGTCGTGCAGGACCACGGGGTGCGGTGGGA
GGGGAGAGGGTGAGAGTGGGCAGAGAGTAGCTGTTTGGGGAATGGCGTTGGGTGGTATGGGTGAT
ATGGGTGTTACTGTTGCGTTATGTGTCTCAATCGCATTTGTTCGGGTGTTTTAGTGTTGACTCGT
TGGTGGTGTTTTCGTGTCCACAGTCGCAGTAAATATACAGATACG
Right flanking sequence: Indices 212321 -- 212820
TACACCCAACGGACACACCCTAAAGTCGACGTTAGTCAAACACGTAGTACTCCTTTCTGTTTGAT
CTTTTTCAATTGCTCCCTGGCTCTCCTATCCTTTCATCATCTTTCTCCACTTTGGTCGTCACTTC
TACGTCTCACCCATATTTCACCACTTCGCACATGTCCCTACTACTCGAGGCGCTCAACACGGCGC
CGCTAAACGCCAGCGAGGCCGCCGAGTGCCAGGCGTACCTCGAGGAGCTCCTCGTCAACGACGAC
CTCCTCTCCACCGAAAACTACACCACCACCTCGGGCTCCACCCGCACCATCGTTGGCGAGATCGC
CGAGCTCGACCAGCAACAACGCATCATCAACGACCAGCTCGGCGAGCTCACCAGCCACAACAGAG
ACACCATCATCGCCCTACAGCACGACGTGTCCACCGTCACCAAAAACCTCACCACCCGGTATCCC
GACATCGTGGCCCTGGTGGCCCGGCCCCAGATCGGAGCCACCAAC
Found at i:213949 original size:27 final size:27
Alignment explanation
Indices: 213889--213978 Score: 144
Period size: 27 Copynumber: 3.3 Consensus size: 27
213879 GATGTTGTAG
* * *
213889 CTTCAATAACATATCCCCTTTAAAATGT
1 CTTCAATAACATATCCTC-TTGAAATAT
213917 CTTCAATAACATATCCTCTTGAAATAT
1 CTTCAATAACATATCCTCTTGAAATAT
213944 CTTCAATAACATATCCTCTTGAAATAT
1 CTTCAATAACATATCCTCTTGAAATAT
213971 CTTCAATA
1 CTTCAATA
213979 TCATCCCCTT
Statistics
Matches: 59, Mismatches: 3, Indels: 1
0.94 0.05 0.02
Matches are distributed among these distances:
27 42 0.71
28 17 0.29
ACGTcount: A:0.37, C:0.23, G:0.03, T:0.37
Consensus pattern (27 bp):
CTTCAATAACATATCCTCTTGAAATAT
Left flanking sequence: Indices 213389 -- 213888
GGCAGTACATCCCCGTGGTGCGCGAGGACCCCGAGAACGACAGCATCGACGGGTTGTTGTTGCAG
CTTGTGTACCTCTGCAAGTCGCTTGCGAAGTTTGGCGCCAACTTCGAGGTGGTGCTCCGGGCCGA
GCTTGCGGAGGTGGTGTCTGCCGACGACTGGCTCCGCAACGTCGAGCGCACGGAAAAGTCTTAGG
AATGATACACGATCTATTAGTACTATGTAGTGTTTCGTAACTTGTCAGCGCTTAACCTTAGCGAT
ACTCTCACTCCTAAACAATGGCATCTTGGGTGTAGTGACTGATGAGATATAGAAACATCAAAATG
GCATGTCCTCAAATATCAAAATGAAATCTTCAACGTAGTAAACTTGAAAACATAACCTCAAAGAC
ATGTCTCATAACATGTCTTCGAAATATCCTCAGAACATAACATCAATGATATCCACATCTTCATT
AACTCCTCTATAACATATCCCCATGATATATCTTCGATGTTGTAG
Right flanking sequence: Indices 213979 -- 214478
TCATCCCCTTATACTCATACCTTATCCTCATACTCATCTCATATCACATCCTCTTTCACCACATC
CTCGTTTCACCATCCTCGTCTCATCCCCTCTCCTTCATCCCCTACTCCTCCAACCGGTTCAACCC
AAACAAGAACCCAATCTCCCGCGACGAAAACTTCGACACCTTCTTCAACCCGCTCTCGTCCATCG
CAGCCCCAATAAGCTCGCGCTTCTTCTCCTGCAACTCGAGAATCCGCAGCTCCACCGTGTCCCGC
ACAAACATCCGGTGGACGTGCACGGGCCGGGTCTGGCCAATACGGTGCGTGCGGTCCATGGCCTG
GTCCTCGACGTAGGGGTTCCAGAAGGGGTCAATAATGATAACGTGCGACGCACACGTCAACGTCA
ACCCCACGTTACCCGCCTTGAGCGACAACATCAACACCTTGCGGTCGGGGTCCTGGTAGAACTTC
TTGATGGTGTCGTTCTTGGCGTCGATCGACATCGACCCGTCGTAG
Found at i:214062 original size:14 final size:16
Alignment explanation
Indices: 214023--214055 Score: 59
Period size: 15 Copynumber: 2.1 Consensus size: 16
214013 CATCTCATAT
214023 CACATCCTC-TTTCAC
1 CACATCCTCGTTTCAC
214038 CACATCCTCGTTTCAC
1 CACATCCTCGTTTCAC
214054 CA
1 CA
214056 TCCTCGTCTC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 9 0.53
16 8 0.47
ACGTcount: A:0.21, C:0.45, G:0.03, T:0.30
Consensus pattern (16 bp):
CACATCCTCGTTTCAC
Left flanking sequence: Indices 213523 -- 214022
GCGGAGGTGGTGTCTGCCGACGACTGGCTCCGCAACGTCGAGCGCACGGAAAAGTCTTAGGAATG
ATACACGATCTATTAGTACTATGTAGTGTTTCGTAACTTGTCAGCGCTTAACCTTAGCGATACTC
TCACTCCTAAACAATGGCATCTTGGGTGTAGTGACTGATGAGATATAGAAACATCAAAATGGCAT
GTCCTCAAATATCAAAATGAAATCTTCAACGTAGTAAACTTGAAAACATAACCTCAAAGACATGT
CTCATAACATGTCTTCGAAATATCCTCAGAACATAACATCAATGATATCCACATCTTCATTAACT
CCTCTATAACATATCCCCATGATATATCTTCGATGTTGTAGCTTCAATAACATATCCCCTTTAAA
ATGTCTTCAATAACATATCCTCTTGAAATATCTTCAATAACATATCCTCTTGAAATATCTTCAAT
ATCATCCCCTTATACTCATACCTTATCCTCATACTCATCTCATAT
Right flanking sequence: Indices 214056 -- 214555
TCCTCGTCTCATCCCCTCTCCTTCATCCCCTACTCCTCCAACCGGTTCAACCCAAACAAGAACCC
AATCTCCCGCGACGAAAACTTCGACACCTTCTTCAACCCGCTCTCGTCCATCGCAGCCCCAATAA
GCTCGCGCTTCTTCTCCTGCAACTCGAGAATCCGCAGCTCCACCGTGTCCCGCACAAACATCCGG
TGGACGTGCACGGGCCGGGTCTGGCCAATACGGTGCGTGCGGTCCATGGCCTGGTCCTCGACGTA
GGGGTTCCAGAAGGGGTCAATAATGATAACGTGCGACGCACACGTCAACGTCAACCCCACGTTAC
CCGCCTTGAGCGACAACATCAACACCTTGCGGTCGGGGTCCTGGTAGAACTTCTTGATGGTGTCG
TTCTTGGCGTCGATCGACATCGACCCGTCGTAGCGCAAGTAGGCAATGCCTGCATCGTCGAACTT
GCGCTTGATCAAGTCAAACAACGTGGTGAACTGGCTGAACACAAT
Found at i:214081 original size:14 final size:15
Alignment explanation
Indices: 214064--214092 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
214054 CATCCTCGTC
214064 TCATCCCCT-CTCCT
1 TCATCCCCTACTCCT
214078 TCATCCCCTACTCCT
1 TCATCCCCTACTCCT
214093 CCAACCGGTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.10, C:0.55, G:0.00, T:0.34
Consensus pattern (15 bp):
TCATCCCCTACTCCT
Left flanking sequence: Indices 213564 -- 214063
GCGCACGGAAAAGTCTTAGGAATGATACACGATCTATTAGTACTATGTAGTGTTTCGTAACTTGT
CAGCGCTTAACCTTAGCGATACTCTCACTCCTAAACAATGGCATCTTGGGTGTAGTGACTGATGA
GATATAGAAACATCAAAATGGCATGTCCTCAAATATCAAAATGAAATCTTCAACGTAGTAAACTT
GAAAACATAACCTCAAAGACATGTCTCATAACATGTCTTCGAAATATCCTCAGAACATAACATCA
ATGATATCCACATCTTCATTAACTCCTCTATAACATATCCCCATGATATATCTTCGATGTTGTAG
CTTCAATAACATATCCCCTTTAAAATGTCTTCAATAACATATCCTCTTGAAATATCTTCAATAAC
ATATCCTCTTGAAATATCTTCAATATCATCCCCTTATACTCATACCTTATCCTCATACTCATCTC
ATATCACATCCTCTTTCACCACATCCTCGTTTCACCATCCTCGTC
Right flanking sequence: Indices 214093 -- 214592
CCAACCGGTTCAACCCAAACAAGAACCCAATCTCCCGCGACGAAAACTTCGACACCTTCTTCAAC
CCGCTCTCGTCCATCGCAGCCCCAATAAGCTCGCGCTTCTTCTCCTGCAACTCGAGAATCCGCAG
CTCCACCGTGTCCCGCACAAACATCCGGTGGACGTGCACGGGCCGGGTCTGGCCAATACGGTGCG
TGCGGTCCATGGCCTGGTCCTCGACGTAGGGGTTCCAGAAGGGGTCAATAATGATAACGTGCGAC
GCACACGTCAACGTCAACCCCACGTTACCCGCCTTGAGCGACAACATCAACACCTTGCGGTCGGG
GTCCTGGTAGAACTTCTTGATGGTGTCGTTCTTGGCGTCGATCGACATCGACCCGTCGTAGCGCA
AGTAGGCAATGCCTGCATCGTCGAACTTGCGCTTGATCAAGTCAAACAACGTGGTGAACTGGCTG
AACACAATCACCTTTTCCTCGGGATAGCGGGTGAAGATGTCCTTG
Found at i:215150 original size:24 final size:24
Alignment explanation
Indices: 215123--215266 Score: 210
Period size: 24 Copynumber: 6.2 Consensus size: 24
215113 GGTCAAACAA
*
215123 CAACAGCGCCACCTCCTCGTCCTT
1 CAACTGCGCCACCTCCTCGTCCTT
*
215147 CAACCGCGCCACCTCCTCGTCCTT
1 CAACTGCGCCACCTCCTCGTCCTT
*
215171 CAACCGCGCCACCTCCTCGTCCTT
1 CAACTGCGCCACCTCCTCGTCCTT
215195 CAACTGCGCCACCT-CT--TCCTT
1 CAACTGCGCCACCTCCTCGTCCTT
*
215216 CAACTGCGCCACCTCCTCGCCCTT
1 CAACTGCGCCACCTCCTCGTCCTT
215240 CAACTGCGCCA---CCTCGTCCTT
1 CAACTGCGCCACCTCCTCGTCCTT
215261 CAACTG
1 CAACTG
215267 GTGCCGCTGG
Statistics
Matches: 113, Mismatches: 4, Indels: 9
0.90 0.03 0.07
Matches are distributed among these distances:
21 34 0.30
22 2 0.02
23 2 0.02
24 75 0.66
ACGTcount: A:0.15, C:0.51, G:0.12, T:0.22
Consensus pattern (24 bp):
CAACTGCGCCACCTCCTCGTCCTT
Left flanking sequence: Indices 214623 -- 215122
AGCAAGTCAAACTTGCCGTCGTGCGACTCGATCACCTCGTTGATGATGGTGTCGGTGGGCATGTG
CTTTTTGGAGCCAAACTGGCGCCGGCACACCAGCACAAACTCATCGCGGCCCATGCGCTGGCGGT
GCACCATGTCAAACACCCGCACGTCCACGAGGTCGCGGCGGGTGAACTTGACGTCCGAGCACCCG
GGACAGTCGCCGCGGTTGCCGTCGGCCTGGGTGAACGCGTCCTGGACGCAGTCGCCGCAGAGAAC
GTGCCCACAGAGCGGCACCGCGAGCAACAAGTCGTCGTGCGGGGTGTAGAAGCTCTCGCACCCGC
GGCACTGGATGTCGTTGATCTCCTCGGGCACCGCGTCCTTGTCGTCGCGCACCTCGTAGGGGCTG
TTGGCGTCCTCGGACTTCGTGAGGTCCAGCTCGGCCTTCAACTGGTCGTACTCCAGTTTCGGCTC
GGGCTTGGCCTCCAATGGGCTGTCGGTGGCGCTGCGGTCAAACAA
Right flanking sequence: Indices 215267 -- 215766
GTGCCGCTGGCCAAGGAGCATCTCCACCGGGTCCCTGTCGTCGTCGTCCATGTCGGGGGTGAGCG
CCGCGAGGATCTGGCCCGTGTGGCGGGCGTCGATCCCGCGGATGGCGTCGTACAACTGGGGAAAC
TCCCCCATCCACTGGCGGATGTACGAGTCGTCCTCGGCCGCGTACGCGCGCTTGAGCTCGCCCAC
CTCGATCAAGTACTGGTGCAAGCACGCCTGGCGCAACCGGGTCAAAAGCGCCAAGATCAGGTCCA
GCCCGGGCCGGCCCTTCTTGCCCAACAACTTTTTCGCCGTCTTTTGCACCTTCATTTCCACCAGC
GCGTAGTACTCGCGCTCGGCGGGCTTCATCTCCACGTTGAGCCGCTTCAAGTGCTTGGGCGGCAA
CAGCAAGATGGGCTGGCCGTCCACCTTGCTGTCCTTGGTGCGCCGGAGCAACACCGCCAGCAACA
CCGCACGCAACTTCTGCATGGCGTCGTTCTTGTCGAACAGGTCGT
Found at i:215230 original size:45 final size:45
Alignment explanation
Indices: 215123--215266 Score: 216
Period size: 45 Copynumber: 3.1 Consensus size: 45
215113 GGTCAAACAA
* *
215123 CAACAGCGCCACCTCCTCGTCCTTCAACCGCGCCACCTCCTCGTCCTT
1 CAACTGCGCCACCTCCTCGTCCTTCAACTGCGCCACCT-CT--TCCTT
*
215171 CAACCGCGCCACCTCCTCGTCCTTCAACTGCGCCACCTCTTCCTT
1 CAACTGCGCCACCTCCTCGTCCTTCAACTGCGCCACCTCTTCCTT
* *
215216 CAACTGCGCCACCTCCTCGCCCTTCAACTGCGCCACCTCGTCCTT
1 CAACTGCGCCACCTCCTCGTCCTTCAACTGCGCCACCTCTTCCTT
215261 CAACTG
1 CAACTG
215267 GTGCCGCTGG
Statistics
Matches: 91, Mismatches: 5, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
45 53 0.58
47 2 0.02
48 36 0.40
ACGTcount: A:0.15, C:0.51, G:0.12, T:0.22
Consensus pattern (45 bp):
CAACTGCGCCACCTCCTCGTCCTTCAACTGCGCCACCTCTTCCTT
Left flanking sequence: Indices 214623 -- 215122
AGCAAGTCAAACTTGCCGTCGTGCGACTCGATCACCTCGTTGATGATGGTGTCGGTGGGCATGTG
CTTTTTGGAGCCAAACTGGCGCCGGCACACCAGCACAAACTCATCGCGGCCCATGCGCTGGCGGT
GCACCATGTCAAACACCCGCACGTCCACGAGGTCGCGGCGGGTGAACTTGACGTCCGAGCACCCG
GGACAGTCGCCGCGGTTGCCGTCGGCCTGGGTGAACGCGTCCTGGACGCAGTCGCCGCAGAGAAC
GTGCCCACAGAGCGGCACCGCGAGCAACAAGTCGTCGTGCGGGGTGTAGAAGCTCTCGCACCCGC
GGCACTGGATGTCGTTGATCTCCTCGGGCACCGCGTCCTTGTCGTCGCGCACCTCGTAGGGGCTG
TTGGCGTCCTCGGACTTCGTGAGGTCCAGCTCGGCCTTCAACTGGTCGTACTCCAGTTTCGGCTC
GGGCTTGGCCTCCAATGGGCTGTCGGTGGCGCTGCGGTCAAACAA
Right flanking sequence: Indices 215267 -- 215766
GTGCCGCTGGCCAAGGAGCATCTCCACCGGGTCCCTGTCGTCGTCGTCCATGTCGGGGGTGAGCG
CCGCGAGGATCTGGCCCGTGTGGCGGGCGTCGATCCCGCGGATGGCGTCGTACAACTGGGGAAAC
TCCCCCATCCACTGGCGGATGTACGAGTCGTCCTCGGCCGCGTACGCGCGCTTGAGCTCGCCCAC
CTCGATCAAGTACTGGTGCAAGCACGCCTGGCGCAACCGGGTCAAAAGCGCCAAGATCAGGTCCA
GCCCGGGCCGGCCCTTCTTGCCCAACAACTTTTTCGCCGTCTTTTGCACCTTCATTTCCACCAGC
GCGTAGTACTCGCGCTCGGCGGGCTTCATCTCCACGTTGAGCCGCTTCAAGTGCTTGGGCGGCAA
CAGCAAGATGGGCTGGCCGTCCACCTTGCTGTCCTTGGTGCGCCGGAGCAACACCGCCAGCAACA
CCGCACGCAACTTCTGCATGGCGTCGTTCTTGTCGAACAGGTCGT
Found at i:217377 original size:12 final size:12
Alignment explanation
Indices: 217352--217407 Score: 60
Period size: 12 Copynumber: 4.7 Consensus size: 12
217342 GGTGAGCCTG
*
217352 GGATGGGTGATT
1 GGATGAGTGATT
*
217364 GGATGAGTGGTT
1 GGATGAGTGATT
217376 GGATG-GATGATT
1 GGATGAG-TGATT
*
217388 GGATGGGTGATT
1 GGATGAGTGATT
*
217400 GGAGGAGT
1 GGATGAGT
217408 TTTCGTGATT
Statistics
Matches: 37, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
11 1 0.03
12 35 0.95
13 1 0.03
ACGTcount: A:0.20, C:0.00, G:0.50, T:0.30
Consensus pattern (12 bp):
GGATGAGTGATT
Left flanking sequence: Indices 216852 -- 217351
TCGGTGGCCAACGTGAAGTCTGCCTGCAAGCCTGCCAGGAGCACCTGGGCCATTTTGACGCCCTC
GGCCGCCAACCGCTGCTTGGCGTCGGCCATGAACGCGCGGAGGTCCTGCAGCTCGCTCTCCCACT
GGGCTATACCGCGGCCGAGCTGGTGGCGGCTTTCCTGGAGGCCCTGGATGCGCAGGGCCAAGTCA
CGGCGCGCCTGCTCCACCAACTGGGCCTGGTGCTCGTCCCACTCGTCTTTGTGGCGGTAGGGGTC
GTGCGAGTGGCGCGGGTCGTCTTCGTAGTCGTCGTCGCTGTGGAACGACACTTCTTTGAACTTGT
TGCGGTCGACGGTGGCGCTGTCGAGCTCGACGAGGTCGTCCTCCAGGTCGTAGAGCGGGACGGGG
GAGTCGTCGTGGGTGTAGATTCCCGCGGGGTCGTAGGCTAGTTGGTGGGAGTGGGAGTTGGAGGG
GTGATTAGATGTGGGGTTGGAGCGGTTGGATGGGTGGTGAGCCTG
Right flanking sequence: Indices 217408 -- 217907
TTTCGTGATTAGTCTCGGAGGCGTTGGCTCTGTTAAGCTGGTCGTAGAGATGCTGGTACTCGCGC
TGGGTATCACTCTGGCTATCGCTCTGGGTGTAGCTGGTCCCCTGGTGCCCGTTCTCGTACACCTC
GGGCTCGTCGTCGTCCAGATCAAGCACTATCACCTCGGGCTGAGGCACCACTTTTGGACGCGCCA
CCAGGCTCGGACTGTCGCTGGGACGCACACCCACGCGCGCCGTAAGCCCCGCTAGCCGTCCCTTG
GGCACTGTGCTCTGGGTGGGCGTGTCCGGAGTCGCCAGCTCCGAGGCCCGATCGGGTTCTTGGGC
CTCAAACGCGGGCTGCGACGAGTAATCGGGCCCGTCCACCTCCATGTCCTCGCTCTCCGCGTGCC
GGGGAGGCGGAGGCAAGTCGTCATCAAACACGATGTCGTCGTGGCCCTGCCAACGGTCGTCCACC
AAGGGGCCCGAGGACGAACGCGCGGTGGCCGCGGACGCGAACAGC
Found at i:217379 original size:24 final size:24
Alignment explanation
Indices: 217352--217402 Score: 75
Period size: 24 Copynumber: 2.1 Consensus size: 24
217342 GGTGAGCCTG
* *
217352 GGATGGGTGATTGGATGAGTGGTT
1 GGATGGATGATTGGATGAGTGATT
*
217376 GGATGGATGATTGGATGGGTGATT
1 GGATGGATGATTGGATGAGTGATT
217400 GGA
1 GGA
217403 GGAGTTTTCG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.20, C:0.00, G:0.49, T:0.31
Consensus pattern (24 bp):
GGATGGATGATTGGATGAGTGATT
Left flanking sequence: Indices 216852 -- 217351
TCGGTGGCCAACGTGAAGTCTGCCTGCAAGCCTGCCAGGAGCACCTGGGCCATTTTGACGCCCTC
GGCCGCCAACCGCTGCTTGGCGTCGGCCATGAACGCGCGGAGGTCCTGCAGCTCGCTCTCCCACT
GGGCTATACCGCGGCCGAGCTGGTGGCGGCTTTCCTGGAGGCCCTGGATGCGCAGGGCCAAGTCA
CGGCGCGCCTGCTCCACCAACTGGGCCTGGTGCTCGTCCCACTCGTCTTTGTGGCGGTAGGGGTC
GTGCGAGTGGCGCGGGTCGTCTTCGTAGTCGTCGTCGCTGTGGAACGACACTTCTTTGAACTTGT
TGCGGTCGACGGTGGCGCTGTCGAGCTCGACGAGGTCGTCCTCCAGGTCGTAGAGCGGGACGGGG
GAGTCGTCGTGGGTGTAGATTCCCGCGGGGTCGTAGGCTAGTTGGTGGGAGTGGGAGTTGGAGGG
GTGATTAGATGTGGGGTTGGAGCGGTTGGATGGGTGGTGAGCCTG
Right flanking sequence: Indices 217403 -- 217902
GGAGTTTTCGTGATTAGTCTCGGAGGCGTTGGCTCTGTTAAGCTGGTCGTAGAGATGCTGGTACT
CGCGCTGGGTATCACTCTGGCTATCGCTCTGGGTGTAGCTGGTCCCCTGGTGCCCGTTCTCGTAC
ACCTCGGGCTCGTCGTCGTCCAGATCAAGCACTATCACCTCGGGCTGAGGCACCACTTTTGGACG
CGCCACCAGGCTCGGACTGTCGCTGGGACGCACACCCACGCGCGCCGTAAGCCCCGCTAGCCGTC
CCTTGGGCACTGTGCTCTGGGTGGGCGTGTCCGGAGTCGCCAGCTCCGAGGCCCGATCGGGTTCT
TGGGCCTCAAACGCGGGCTGCGACGAGTAATCGGGCCCGTCCACCTCCATGTCCTCGCTCTCCGC
GTGCCGGGGAGGCGGAGGCAAGTCGTCATCAAACACGATGTCGTCGTGGCCCTGCCAACGGTCGT
CCACCAAGGGGCCCGAGGACGAACGCGCGGTGGCCGCGGACGCGA
Found at i:218730 original size:15 final size:15
Alignment explanation
Indices: 218707--218758 Score: 79
Period size: 15 Copynumber: 3.5 Consensus size: 15
218697 TGCCTCCTAA
*
218707 GTGCTCCTGTCTCCT
1 GTGCACCTGTCTCCT
*
218722 GTGCACCTGACTCCT
1 GTGCACCTGTCTCCT
218737 GTGCACCTGTCT-CT
1 GTGCACCTGTCTCCT
218751 GTGCACCT
1 GTGCACCT
218759 CTTTCCTCCC
Statistics
Matches: 34, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
14 10 0.29
15 24 0.71
ACGTcount: A:0.08, C:0.38, G:0.21, T:0.33
Consensus pattern (15 bp):
GTGCACCTGTCTCCT
Left flanking sequence: Indices 218207 -- 218706
TGGTTTACTAGGGCATTGCCACTCACCCCATCGTGGGGTGAGCAGGATGACAAATTGGGAGTAGG
CCCAGATGCAGCTGAACACTAGAGCTTCTGGGGTGATTAGTACTGCCCTACGCTGGGGTACGTTG
AGCGTGGCGCCAACGCAACCTGCAAACCGTACATCAACGTGCTTAGCCCACCGTATGCAACCATC
ACGAGCCGTATCAGCTCAAGACATTCCTTCTGCGTGCATACCCGTCTACTTTACTCGGCTCCAAT
TCCGTTATGTAGGTCAATATAGTGTTCATAAGTGTTTACAGTGTTGTCTGATACTCATATATTTT
GTTTTTCATTCTCCCCTTGCTATTCACCTGGTGGCTCATTGAAGATTTTCATTTTGACACTAAGC
GGCTCGCTTTCTCGGTCTTGCAGTCACCTATACTCGCTTCTACAATTGCCCTACCTATCCGTACA
TTCTTTGCTTCCTCTCACTTCCTTCAATTTCCCCTTGCCTCCTAA
Right flanking sequence: Indices 218759 -- 219258
CTTTCCTCCCTTCTACTCCCTTTGCCTACCTCTTTTCCCCTGACGTCACTTCTTCTTCCTCCCAT
CTCCTCCATTTCCTCCGTCGTTCTTCTCACTCCTCTACACTTCCCTCCCACTTTCTCTATATCCG
TTCATTAAGTACATCACAAGTAGTCACCGTTCTCCTCGAGAATCTTGTCAAGACAGATCTCCAAC
TCAGTCATAAGGCGGTCGTTGTCCTGGTCAAACGCAAGACCGCGCTGGTAGTCGGCCCGGGCCTC
CTCGTAGTTGCCCAAAAAGTAGTTGGCCACCCCGCGGCGCAAAAAGTTGTCGGGCGAGCACATCA
TCATCCCAAGCAACATGTCAGCATCGTTGTAGGCGTCCAAGTACTGGCCAGTCTTCAAATACGCG
TCGGCGCGCAGCATAAGGAAAAGCGACAACTCCTGTAAAGTGCCCTGGAACAGCTCAAACTTCGA
GCGACGCGAAATCATCTCGATCCCAAGGGTGAACTGCTTGGCGCT
Found at i:219687 original size:14 final size:14
Alignment explanation
Indices: 219668--219711 Score: 61
Period size: 14 Copynumber: 3.1 Consensus size: 14
219658 GTTTAGAGAG
*
219668 GGTTAGAGATTGTT
1 GGTTAGAGATCGTT
*
219682 GGTTAGCGATCGTT
1 GGTTAGAGATCGTT
*
219696 GGTTAGAGACCGTT
1 GGTTAGAGATCGTT
219710 GG
1 GG
219712 ATATGGGTCG
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
14 26 1.00
ACGTcount: A:0.18, C:0.09, G:0.39, T:0.34
Consensus pattern (14 bp):
GGTTAGAGATCGTT
Left flanking sequence: Indices 219168 -- 219667
AAAGCGACAACTCCTGTAAAGTGCCCTGGAACAGCTCAAACTTCGAGCGACGCGAAATCATCTCG
ATCCCAAGGGTGAACTGCTTGGCGCTGTCCTCGAACTTGCCCGTCTTGAACAGCTGCACTCCCAG
CTCGTACATCTTCTTGACCATTTTCAGGAGGTCCTGGTTGAAGTTCTCGGGAGTGGGAGGAGGAG
GCACGTCGTGGCCACAGCCAATCAACTCCAGGGTCAAGATGTTGAGCTGGTCGATGTCGAGCTTG
ACCTGTGGAACCTTCTCCGCCAACTCGGCCGGAATCGCAAGTCTCTTGCTGTTGGGGTCGTACGA
GATTTGCACGTTCATGGCCACGGTAAACAGAACACGACACTTGGTTGAAAAATGCGCGTGTGTGA
ACAAAGACGTGATAAGATTAGTGCGAAGAAAAGGAAATAAGGTGGAGAGCGAAGAGCGAGAAAAG
AGGAAAAGAGAAGGCAGAGTTATCACTAAGGCGTTGTTTAGAGAG
Right flanking sequence: Indices 219712 -- 220211
ATATGGGTCGTGGTTGATTCAACTCGTTTAACCTTATCCACTTGCCAGTGCTGTATGTCTTGTTT
CAGGTTGCGTAGGTGAAACATAGCCACCGCGACCCTGTTTCATCATGAGGTCGACAACTACAAAG
GGAAATGTGTCAATGCAAGCGAAGCTACAGAGTCATCGTAATATCATTCATTCATATACTTAGTA
GTCGTTGTCGCGACGGTTAGACGAGCCGTAAGAGTCGTCGTTACCACCGAAACCAGACGAACCGC
GGCCAGAAGAGCCGTAAGAGTTGTCGTTGTCGTCGTCTCTGCCGGATCTACCAGAAGAGCCGTAC
GAGTTGTCGTTGTCTCTGCCAGAGGAACCGAAGCCGGACGAGCCAGAGCCAGAGCCGTAAGAGTC
AGAGCCACCACGGCCAGAAGAGCCGTAAGAGTCGTCGTTACCAGACGAGCCAAAGCTAGAAGAGC
CAGAGCCACCACGGCCAGAAGAGCCGTAAGAGTCATCGTTGTCTC
Found at i:220125 original size:33 final size:33
Alignment explanation
Indices: 220087--220201 Score: 105
Period size: 33 Copynumber: 3.5 Consensus size: 33
220077 AGCCAGAGCC
220087 AGAGCCGTAAGAGTCAGAGCCACCACGGCCAGA
1 AGAGCCGTAAGAGTCAGAGCCACCACGGCCAGA
* **
220120 AGAGCCGTAAGAGTC-GTCGTTACCAGACGAGCC--A
1 AGAGCCGTAAGAGTCAG-AGCCACC--ACG-GCCAGA
* *
220154 A-AGCTAG-AAGAGCCAGAGCCACCACGGCCAGA
1 AGAGC-CGTAAGAGTCAGAGCCACCACGGCCAGA
220186 AGAGCCGTAAGAGTCA
1 AGAGCCGTAAGAGTCA
220202 TCGTTGTCTC
Statistics
Matches: 62, Mismatches: 10, Indels: 20
0.67 0.11 0.22
Matches are distributed among these distances:
30 3 0.05
31 3 0.05
32 4 0.06
33 42 0.68
34 4 0.06
35 3 0.05
36 3 0.05
ACGTcount: A:0.34, C:0.28, G:0.30, T:0.09
Consensus pattern (33 bp):
AGAGCCGTAAGAGTCAGAGCCACCACGGCCAGA
Left flanking sequence: Indices 219587 -- 220086
AAAGGAAATAAGGTGGAGAGCGAAGAGCGAGAAAAGAGGAAAAGAGAAGGCAGAGTTATCACTAA
GGCGTTGTTTAGAGAGGGTTAGAGATTGTTGGTTAGCGATCGTTGGTTAGAGACCGTTGGATATG
GGTCGTGGTTGATTCAACTCGTTTAACCTTATCCACTTGCCAGTGCTGTATGTCTTGTTTCAGGT
TGCGTAGGTGAAACATAGCCACCGCGACCCTGTTTCATCATGAGGTCGACAACTACAAAGGGAAA
TGTGTCAATGCAAGCGAAGCTACAGAGTCATCGTAATATCATTCATTCATATACTTAGTAGTCGT
TGTCGCGACGGTTAGACGAGCCGTAAGAGTCGTCGTTACCACCGAAACCAGACGAACCGCGGCCA
GAAGAGCCGTAAGAGTTGTCGTTGTCGTCGTCTCTGCCGGATCTACCAGAAGAGCCGTACGAGTT
GTCGTTGTCTCTGCCAGAGGAACCGAAGCCGGACGAGCCAGAGCC
Right flanking sequence: Indices 220202 -- 220701
TCGTTGTCTCTGCCGGACGAGCCAAAGCCAGACGAGCCGGAGCCAGAGCCGTAAGAGTCAGAACC
ACCACGGCCAGAAGAGCCGTAGGAGTTGTCGTTGTCTCTGCCAGACGAGCCGAAGCCGGACGAGC
CAGAGCCAGAGCCGTAAGAGTCAGAGCCACCACGGCCAGAAGAGCCGTACGAGTCGTCGTTGTCT
CTGCCAGACGAGCCAAAGCCAGACGAGCCAGAGCCACGGCCAGAAGAGCCGTAGGAGTCATCGTC
GTCCTTACCCGATCTGCCAGACGAGCCGTAAGAGTTGTCGTTGCCAGAGGTTCTGCCAGAAGAAC
CGAACGAGTCGTCGTTGCCTCTTCTGTCGTTGTCACCTCTTCTCTCGTTGTCGTCGTCGTGCTTA
CCCAAACCAAAAACCATTGTTAATTGTAGTGCAATTGAGTTATATCCGCCACCTTTTATACTCTC
CCAGGGGCTGGCAACCTGAAATTGCCCGAGCCTCCTCAGATTTGC
Found at i:220344 original size:21 final size:21
Alignment explanation
Indices: 220320--220360 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
220310 GACGAGCCGA
*
220320 AGCCGGACGAGCCAGAGCCAG
1 AGCCGGAAGAGCCAGAGCCAG
* *
220341 AGCCGTAAGAGTCAGAGCCA
1 AGCCGGAAGAGCCAGAGCCA
220361 CCACGGCCAG
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.32, C:0.29, G:0.34, T:0.05
Consensus pattern (21 bp):
AGCCGGAAGAGCCAGAGCCAG
Left flanking sequence: Indices 219820 -- 220319
CATGAGGTCGACAACTACAAAGGGAAATGTGTCAATGCAAGCGAAGCTACAGAGTCATCGTAATA
TCATTCATTCATATACTTAGTAGTCGTTGTCGCGACGGTTAGACGAGCCGTAAGAGTCGTCGTTA
CCACCGAAACCAGACGAACCGCGGCCAGAAGAGCCGTAAGAGTTGTCGTTGTCGTCGTCTCTGCC
GGATCTACCAGAAGAGCCGTACGAGTTGTCGTTGTCTCTGCCAGAGGAACCGAAGCCGGACGAGC
CAGAGCCAGAGCCGTAAGAGTCAGAGCCACCACGGCCAGAAGAGCCGTAAGAGTCGTCGTTACCA
GACGAGCCAAAGCTAGAAGAGCCAGAGCCACCACGGCCAGAAGAGCCGTAAGAGTCATCGTTGTC
TCTGCCGGACGAGCCAAAGCCAGACGAGCCGGAGCCAGAGCCGTAAGAGTCAGAACCACCACGGC
CAGAAGAGCCGTAGGAGTTGTCGTTGTCTCTGCCAGACGAGCCGA
Right flanking sequence: Indices 220361 -- 220860
CCACGGCCAGAAGAGCCGTACGAGTCGTCGTTGTCTCTGCCAGACGAGCCAAAGCCAGACGAGCC
AGAGCCACGGCCAGAAGAGCCGTAGGAGTCATCGTCGTCCTTACCCGATCTGCCAGACGAGCCGT
AAGAGTTGTCGTTGCCAGAGGTTCTGCCAGAAGAACCGAACGAGTCGTCGTTGCCTCTTCTGTCG
TTGTCACCTCTTCTCTCGTTGTCGTCGTCGTGCTTACCCAAACCAAAAACCATTGTTAATTGTAG
TGCAATTGAGTTATATCCGCCACCTTTTATACTCTCCCAGGGGCTGGCAACCTGAAATTGCCCGA
GCCTCCTCAGATTTGCAGCCCTCATGTACTTCCCCTTATTTTTTAGGCATGGCACACGCATCGGT
TACACCTCACTGACAACGTGTGCTCAACAATTGGCCTCGTTCCGGGTGAAACTACGTGGAACCGC
CGTTATCTGAGCCAATTGGGCCCCGTGGTGGCGCTCCCTCGAGCA
Found at i:220419 original size:15 final size:15
Alignment explanation
Indices: 220399--220432 Score: 59
Period size: 15 Copynumber: 2.3 Consensus size: 15
220389 CGTTGTCTCT
220399 GCCAGACGAGCCAAA
1 GCCAGACGAGCCAAA
*
220414 GCCAGACGAGCCAGA
1 GCCAGACGAGCCAAA
220429 GCCA
1 GCCA
220433 CGGCCAGAAG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.35, C:0.35, G:0.29, T:0.00
Consensus pattern (15 bp):
GCCAGACGAGCCAAA
Left flanking sequence: Indices 219899 -- 220398
ACTTAGTAGTCGTTGTCGCGACGGTTAGACGAGCCGTAAGAGTCGTCGTTACCACCGAAACCAGA
CGAACCGCGGCCAGAAGAGCCGTAAGAGTTGTCGTTGTCGTCGTCTCTGCCGGATCTACCAGAAG
AGCCGTACGAGTTGTCGTTGTCTCTGCCAGAGGAACCGAAGCCGGACGAGCCAGAGCCAGAGCCG
TAAGAGTCAGAGCCACCACGGCCAGAAGAGCCGTAAGAGTCGTCGTTACCAGACGAGCCAAAGCT
AGAAGAGCCAGAGCCACCACGGCCAGAAGAGCCGTAAGAGTCATCGTTGTCTCTGCCGGACGAGC
CAAAGCCAGACGAGCCGGAGCCAGAGCCGTAAGAGTCAGAACCACCACGGCCAGAAGAGCCGTAG
GAGTTGTCGTTGTCTCTGCCAGACGAGCCGAAGCCGGACGAGCCAGAGCCAGAGCCGTAAGAGTC
AGAGCCACCACGGCCAGAAGAGCCGTACGAGTCGTCGTTGTCTCT
Right flanking sequence: Indices 220433 -- 220932
CGGCCAGAAGAGCCGTAGGAGTCATCGTCGTCCTTACCCGATCTGCCAGACGAGCCGTAAGAGTT
GTCGTTGCCAGAGGTTCTGCCAGAAGAACCGAACGAGTCGTCGTTGCCTCTTCTGTCGTTGTCAC
CTCTTCTCTCGTTGTCGTCGTCGTGCTTACCCAAACCAAAAACCATTGTTAATTGTAGTGCAATT
GAGTTATATCCGCCACCTTTTATACTCTCCCAGGGGCTGGCAACCTGAAATTGCCCGAGCCTCCT
CAGATTTGCAGCCCTCATGTACTTCCCCTTATTTTTTAGGCATGGCACACGCATCGGTTACACCT
CACTGACAACGTGTGCTCAACAATTGGCCTCGTTCCGGGTGAAACTACGTGGAACCGCCGTTATC
TGAGCCAATTGGGCCCCGTGGTGGCGCTCCCTCGAGCATTGCCCCAGCTGGCTAGTGTACCCGCG
AGCCCGCCTCAAACTGCCGCTTCTGACGCCCCCCGGTGACACAAT
Found at i:220432 original size:21 final size:21
Alignment explanation
Indices: 220406--220446 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
220396 TCTGCCAGAC
*
220406 GAGCCAAAGCCAGACGAGCCA
1 GAGCCAAAGCCAGAAGAGCCA
**
220427 GAGCCACGGCCAGAAGAGCC
1 GAGCCAAAGCCAGAAGAGCC
220447 GTAGGAGTCA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.34, C:0.34, G:0.32, T:0.00
Consensus pattern (21 bp):
GAGCCAAAGCCAGAAGAGCCA
Left flanking sequence: Indices 219906 -- 220405
AGTCGTTGTCGCGACGGTTAGACGAGCCGTAAGAGTCGTCGTTACCACCGAAACCAGACGAACCG
CGGCCAGAAGAGCCGTAAGAGTTGTCGTTGTCGTCGTCTCTGCCGGATCTACCAGAAGAGCCGTA
CGAGTTGTCGTTGTCTCTGCCAGAGGAACCGAAGCCGGACGAGCCAGAGCCAGAGCCGTAAGAGT
CAGAGCCACCACGGCCAGAAGAGCCGTAAGAGTCGTCGTTACCAGACGAGCCAAAGCTAGAAGAG
CCAGAGCCACCACGGCCAGAAGAGCCGTAAGAGTCATCGTTGTCTCTGCCGGACGAGCCAAAGCC
AGACGAGCCGGAGCCAGAGCCGTAAGAGTCAGAACCACCACGGCCAGAAGAGCCGTAGGAGTTGT
CGTTGTCTCTGCCAGACGAGCCGAAGCCGGACGAGCCAGAGCCAGAGCCGTAAGAGTCAGAGCCA
CCACGGCCAGAAGAGCCGTACGAGTCGTCGTTGTCTCTGCCAGAC
Right flanking sequence: Indices 220447 -- 220946
GTAGGAGTCATCGTCGTCCTTACCCGATCTGCCAGACGAGCCGTAAGAGTTGTCGTTGCCAGAGG
TTCTGCCAGAAGAACCGAACGAGTCGTCGTTGCCTCTTCTGTCGTTGTCACCTCTTCTCTCGTTG
TCGTCGTCGTGCTTACCCAAACCAAAAACCATTGTTAATTGTAGTGCAATTGAGTTATATCCGCC
ACCTTTTATACTCTCCCAGGGGCTGGCAACCTGAAATTGCCCGAGCCTCCTCAGATTTGCAGCCC
TCATGTACTTCCCCTTATTTTTTAGGCATGGCACACGCATCGGTTACACCTCACTGACAACGTGT
GCTCAACAATTGGCCTCGTTCCGGGTGAAACTACGTGGAACCGCCGTTATCTGAGCCAATTGGGC
CCCGTGGTGGCGCTCCCTCGAGCATTGCCCCAGCTGGCTAGTGTACCCGCGAGCCCGCCTCAAAC
TGCCGCTTCTGACGCCCCCCGGTGACACAATTACGAACACGTTGG
Found at i:220444 original size:93 final size:93
Alignment explanation
Indices: 220161--220432 Score: 454
Period size: 93 Copynumber: 2.9 Consensus size: 93
220151 CCAAAGCTAG
* * *
220161 AAGAGCCAGAGCCACCACGGCCAGAAGAGCCGTAAGAGTCATCGTTGTCTCTGCCGGACGAGCCA
1 AAGAGTCAGAGCCACCACGGCCAGAAGAGCCGTAAGAGTCGTCGTTGTCTCTGCCAGACGAGCCA
*
220226 AAGCCAGACGAGCCGGAGCCAGAGCCGT
66 AAGCCAGACGAGCCAGAGCCAGAGCCGT
* * * *
220254 AAGAGTCAGAACCACCACGGCCAGAAGAGCCGTAGGAGTTGTCGTTGTCTCTGCCAGACGAGCCG
1 AAGAGTCAGAGCCACCACGGCCAGAAGAGCCGTAAGAGTCGTCGTTGTCTCTGCCAGACGAGCCA
*
220319 AAGCCGGACGAGCCAGAGCCAGAGCCGT
66 AAGCCAGACGAGCCAGAGCCAGAGCCGT
*
220347 AAGAGTCAGAGCCACCACGGCCAGAAGAGCCGTACGAGTCGTCGTTGTCTCTGCCAGACGAGCCA
1 AAGAGTCAGAGCCACCACGGCCAGAAGAGCCGTAAGAGTCGTCGTTGTCTCTGCCAGACGAGCCA
220412 AAGCCAGACGAGCCAGAGCCA
66 AAGCCAGACGAGCCAGAGCCA
220433 CGGCCAGAAG
Statistics
Matches: 165, Mismatches: 14, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 165 1.00
ACGTcount: A:0.28, C:0.31, G:0.31, T:0.11
Consensus pattern (93 bp):
AAGAGTCAGAGCCACCACGGCCAGAAGAGCCGTAAGAGTCGTCGTTGTCTCTGCCAGACGAGCCA
AAGCCAGACGAGCCAGAGCCAGAGCCGT
Left flanking sequence: Indices 219661 -- 220160
TAGAGAGGGTTAGAGATTGTTGGTTAGCGATCGTTGGTTAGAGACCGTTGGATATGGGTCGTGGT
TGATTCAACTCGTTTAACCTTATCCACTTGCCAGTGCTGTATGTCTTGTTTCAGGTTGCGTAGGT
GAAACATAGCCACCGCGACCCTGTTTCATCATGAGGTCGACAACTACAAAGGGAAATGTGTCAAT
GCAAGCGAAGCTACAGAGTCATCGTAATATCATTCATTCATATACTTAGTAGTCGTTGTCGCGAC
GGTTAGACGAGCCGTAAGAGTCGTCGTTACCACCGAAACCAGACGAACCGCGGCCAGAAGAGCCG
TAAGAGTTGTCGTTGTCGTCGTCTCTGCCGGATCTACCAGAAGAGCCGTACGAGTTGTCGTTGTC
TCTGCCAGAGGAACCGAAGCCGGACGAGCCAGAGCCAGAGCCGTAAGAGTCAGAGCCACCACGGC
CAGAAGAGCCGTAAGAGTCGTCGTTACCAGACGAGCCAAAGCTAG
Right flanking sequence: Indices 220433 -- 220932
CGGCCAGAAGAGCCGTAGGAGTCATCGTCGTCCTTACCCGATCTGCCAGACGAGCCGTAAGAGTT
GTCGTTGCCAGAGGTTCTGCCAGAAGAACCGAACGAGTCGTCGTTGCCTCTTCTGTCGTTGTCAC
CTCTTCTCTCGTTGTCGTCGTCGTGCTTACCCAAACCAAAAACCATTGTTAATTGTAGTGCAATT
GAGTTATATCCGCCACCTTTTATACTCTCCCAGGGGCTGGCAACCTGAAATTGCCCGAGCCTCCT
CAGATTTGCAGCCCTCATGTACTTCCCCTTATTTTTTAGGCATGGCACACGCATCGGTTACACCT
CACTGACAACGTGTGCTCAACAATTGGCCTCGTTCCGGGTGAAACTACGTGGAACCGCCGTTATC
TGAGCCAATTGGGCCCCGTGGTGGCGCTCCCTCGAGCATTGCCCCAGCTGGCTAGTGTACCCGCG
AGCCCGCCTCAAACTGCCGCTTCTGACGCCCCCCGGTGACACAAT
Found at i:220565 original size:18 final size:18
Alignment explanation
Indices: 220544--220578 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
220534 GTCGTCGTTG
*
220544 CCTCTTCTGTCGTTGTCA
1 CCTCTTCTCTCGTTGTCA
220562 CCTCTTCTCTCGTTGTC
1 CCTCTTCTCTCGTTGTC
220579 GTCGTCGTGC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.03, C:0.37, G:0.14, T:0.46
Consensus pattern (18 bp):
CCTCTTCTCTCGTTGTCA
Left flanking sequence: Indices 220044 -- 220543
CGTTGTCTCTGCCAGAGGAACCGAAGCCGGACGAGCCAGAGCCAGAGCCGTAAGAGTCAGAGCCA
CCACGGCCAGAAGAGCCGTAAGAGTCGTCGTTACCAGACGAGCCAAAGCTAGAAGAGCCAGAGCC
ACCACGGCCAGAAGAGCCGTAAGAGTCATCGTTGTCTCTGCCGGACGAGCCAAAGCCAGACGAGC
CGGAGCCAGAGCCGTAAGAGTCAGAACCACCACGGCCAGAAGAGCCGTAGGAGTTGTCGTTGTCT
CTGCCAGACGAGCCGAAGCCGGACGAGCCAGAGCCAGAGCCGTAAGAGTCAGAGCCACCACGGCC
AGAAGAGCCGTACGAGTCGTCGTTGTCTCTGCCAGACGAGCCAAAGCCAGACGAGCCAGAGCCAC
GGCCAGAAGAGCCGTAGGAGTCATCGTCGTCCTTACCCGATCTGCCAGACGAGCCGTAAGAGTTG
TCGTTGCCAGAGGTTCTGCCAGAAGAACCGAACGAGTCGTCGTTG
Right flanking sequence: Indices 220579 -- 221078
GTCGTCGTGCTTACCCAAACCAAAAACCATTGTTAATTGTAGTGCAATTGAGTTATATCCGCCAC
CTTTTATACTCTCCCAGGGGCTGGCAACCTGAAATTGCCCGAGCCTCCTCAGATTTGCAGCCCTC
ATGTACTTCCCCTTATTTTTTAGGCATGGCACACGCATCGGTTACACCTCACTGACAACGTGTGC
TCAACAATTGGCCTCGTTCCGGGTGAAACTACGTGGAACCGCCGTTATCTGAGCCAATTGGGCCC
CGTGGTGGCGCTCCCTCGAGCATTGCCCCAGCTGGCTAGTGTACCCGCGAGCCCGCCTCAAACTG
CCGCTTCTGACGCCCCCCGGTGACACAATTACGAACACGTTGGGCGCAACCTGTGTCGAAGGGTT
ACGAGACCTTCGCTATCCCCTACTGTGGAAGCTTCCCTCACCGAGTTGACTGAGCCCCTCTGCAC
CACTGACGCCTCTCTCGAAGTATCGTTATGCGACGCATAATTACA
Found at i:238095 original size:21 final size:18
Alignment explanation
Indices: 238042--238086 Score: 81
Period size: 18 Copynumber: 2.5 Consensus size: 18
238032 GAAGGCGGGC
*
238042 GAGACGAGCAAGCCCCAG
1 GAGACGAGCAAGCCCCAA
238060 GAGACGAGCAAGCCCCAA
1 GAGACGAGCAAGCCCCAA
238078 GAGACGAGC
1 GAGACGAGC
238087 GAAAAGCCCG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 26 1.00
ACGTcount: A:0.36, C:0.31, G:0.33, T:0.00
Consensus pattern (18 bp):
GAGACGAGCAAGCCCCAA
Left flanking sequence: Indices 237542 -- 238041
TGACCAACAACCGCGTGGAAACCGCCACCCAGACCCACACCGTGGAGTCGTTTTACCAGTCGCTC
AACTTTGTGAAGAAGCTGGCCACGCCGCCGGCGCCACCGGCCAAGAAGGTGCGCAAACCGTTCCT
GGCCGCGTTCAAATACGACCTCGCGAAGATCGAGGGTGCCCACAAGAAGCTGAGCAACACGCTCG
ACGGGTATCTTGGGGGCGTCAGCAAGCCCAAGTTCAAGAAGGACACGAAAAAGGTGCTGCTTGGC
CAGCCCACGCGGGACCCGTCGCTTTTGGGCCCGCGGACCACCCCGAAGTTGGACCCTGAGTACGT
GGACAAGTCCAACAAGTTGGCGAGCATGTTGAAGGTGAACGACGCGAAGGAGGAGGGGGACAAGC
CTGCGGTGGCGCCCAGCGCTGGTTTCAAGCTTGATCTCTCGAAGGCTGCGGAGAAGGCGCAGGCG
GGCGAAAAGGAGGCTGTAGGTGGGAAGCCAGCGGAGAAGGCGGGC
Right flanking sequence: Indices 238087 -- 238586
GAAAAGCCCGCTTTTTCGTTTGGCAAGCCCCAGGAGACGAGCGAGAAGCCTGCTTTTTCGTTTGG
CAAGCCACTGGAGGCCGCGAAAACGAGCGACAAGCCCGCTTTCTCGTTTGGTAAGCCTCTGGAGA
CCAAGGAGGCTCCCAAAGAGGCACCCAAGGAGGCCAAGGAGGCTCCCAAGGTGTCGTTTGGGCTC
TTTGGCAAGTCCACAGACTCTCAGCCCGAGAAACCCGCCGACAAGACCACCGACAAGCCCACCGA
GGCAGCCAAGCCCGCGTTCTCGTTTGGCAAGCTGGAACCGTCCCAACCAGACAAGCCAGCGTTCT
CCTTCGGGTCCAAGGACGAGCCCAAAACCGAGTCCAAGCCCGCGCAGCCCGCGTTTTCGTTTGGC
AAGAAGCCCGAGGAGACCAAGGAGCCCGCGAAACCCGCCTTCTCCTTTGGCAGCAAGCCCGAGGA
GCCCACCAAACCAGCATTTTCGTTTGGCCAGCCCAAAGACACGGC
Found at i:238114 original size:42 final size:42
Alignment explanation
Indices: 238067--238157 Score: 155
Period size: 42 Copynumber: 2.2 Consensus size: 42
238057 CAGGAGACGA
238067 GCAAGCCCCAAGAGACGAGCGAAAAGCCCGCTTTTTCGTTTG
1 GCAAGCCCCAAGAGACGAGCGAAAAGCCCGCTTTTTCGTTTG
* * *
238109 GCAAGCCCCAGGAGACGAGCGAGAAGCCTGCTTTTTCGTTTG
1 GCAAGCCCCAAGAGACGAGCGAAAAGCCCGCTTTTTCGTTTG
238151 GCAAGCC
1 GCAAGCC
238158 ACTGGAGGCC
Statistics
Matches: 46, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
42 46 1.00
ACGTcount: A:0.24, C:0.29, G:0.29, T:0.19
Consensus pattern (42 bp):
GCAAGCCCCAAGAGACGAGCGAAAAGCCCGCTTTTTCGTTTG
Left flanking sequence: Indices 237567 -- 238066
CACCCAGACCCACACCGTGGAGTCGTTTTACCAGTCGCTCAACTTTGTGAAGAAGCTGGCCACGC
CGCCGGCGCCACCGGCCAAGAAGGTGCGCAAACCGTTCCTGGCCGCGTTCAAATACGACCTCGCG
AAGATCGAGGGTGCCCACAAGAAGCTGAGCAACACGCTCGACGGGTATCTTGGGGGCGTCAGCAA
GCCCAAGTTCAAGAAGGACACGAAAAAGGTGCTGCTTGGCCAGCCCACGCGGGACCCGTCGCTTT
TGGGCCCGCGGACCACCCCGAAGTTGGACCCTGAGTACGTGGACAAGTCCAACAAGTTGGCGAGC
ATGTTGAAGGTGAACGACGCGAAGGAGGAGGGGGACAAGCCTGCGGTGGCGCCCAGCGCTGGTTT
CAAGCTTGATCTCTCGAAGGCTGCGGAGAAGGCGCAGGCGGGCGAAAAGGAGGCTGTAGGTGGGA
AGCCAGCGGAGAAGGCGGGCGAGACGAGCAAGCCCCAGGAGACGA
Right flanking sequence: Indices 238158 -- 238657
ACTGGAGGCCGCGAAAACGAGCGACAAGCCCGCTTTCTCGTTTGGTAAGCCTCTGGAGACCAAGG
AGGCTCCCAAAGAGGCACCCAAGGAGGCCAAGGAGGCTCCCAAGGTGTCGTTTGGGCTCTTTGGC
AAGTCCACAGACTCTCAGCCCGAGAAACCCGCCGACAAGACCACCGACAAGCCCACCGAGGCAGC
CAAGCCCGCGTTCTCGTTTGGCAAGCTGGAACCGTCCCAACCAGACAAGCCAGCGTTCTCCTTCG
GGTCCAAGGACGAGCCCAAAACCGAGTCCAAGCCCGCGCAGCCCGCGTTTTCGTTTGGCAAGAAG
CCCGAGGAGACCAAGGAGCCCGCGAAACCCGCCTTCTCCTTTGGCAGCAAGCCCGAGGAGCCCAC
CAAACCAGCATTTTCGTTTGGCCAGCCCAAAGACACGGCCACCAACGACGCCAAGGACGCCTCCG
ACAAACCGGCGTTCTCGTTTGGCGCCAAACCAACCCAGCCTGAGG
Found at i:238237 original size:12 final size:12
Alignment explanation
Indices: 238217--238267 Score: 54
Period size: 12 Copynumber: 4.5 Consensus size: 12
238207 CCTCTGGAGA
*
238217 CCAAGGAGGCTC
1 CCAAGGAGGCAC
*
238229 CCAAAGAGGCAC
1 CCAAGGAGGCAC
238241 CCAAGGAGG---
1 CCAAGGAGGCAC
*
238250 CCAAGGAGGCTC
1 CCAAGGAGGCAC
238262 CCAAGG
1 CCAAGG
238268 TGTCGTTTGG
Statistics
Matches: 33, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
9 9 0.27
12 24 0.73
ACGTcount: A:0.31, C:0.31, G:0.33, T:0.04
Consensus pattern (12 bp):
CCAAGGAGGCAC
Left flanking sequence: Indices 237717 -- 238216
GAAGCTGAGCAACACGCTCGACGGGTATCTTGGGGGCGTCAGCAAGCCCAAGTTCAAGAAGGACA
CGAAAAAGGTGCTGCTTGGCCAGCCCACGCGGGACCCGTCGCTTTTGGGCCCGCGGACCACCCCG
AAGTTGGACCCTGAGTACGTGGACAAGTCCAACAAGTTGGCGAGCATGTTGAAGGTGAACGACGC
GAAGGAGGAGGGGGACAAGCCTGCGGTGGCGCCCAGCGCTGGTTTCAAGCTTGATCTCTCGAAGG
CTGCGGAGAAGGCGCAGGCGGGCGAAAAGGAGGCTGTAGGTGGGAAGCCAGCGGAGAAGGCGGGC
GAGACGAGCAAGCCCCAGGAGACGAGCAAGCCCCAAGAGACGAGCGAAAAGCCCGCTTTTTCGTT
TGGCAAGCCCCAGGAGACGAGCGAGAAGCCTGCTTTTTCGTTTGGCAAGCCACTGGAGGCCGCGA
AAACGAGCGACAAGCCCGCTTTCTCGTTTGGTAAGCCTCTGGAGA
Right flanking sequence: Indices 238268 -- 238767
TGTCGTTTGGGCTCTTTGGCAAGTCCACAGACTCTCAGCCCGAGAAACCCGCCGACAAGACCACC
GACAAGCCCACCGAGGCAGCCAAGCCCGCGTTCTCGTTTGGCAAGCTGGAACCGTCCCAACCAGA
CAAGCCAGCGTTCTCCTTCGGGTCCAAGGACGAGCCCAAAACCGAGTCCAAGCCCGCGCAGCCCG
CGTTTTCGTTTGGCAAGAAGCCCGAGGAGACCAAGGAGCCCGCGAAACCCGCCTTCTCCTTTGGC
AGCAAGCCCGAGGAGCCCACCAAACCAGCATTTTCGTTTGGCCAGCCCAAAGACACGGCCACCAA
CGACGCCAAGGACGCCTCCGACAAACCGGCGTTCTCGTTTGGCGCCAAACCAACCCAGCCTGAGG
CCGACAAACCCGCCGACAAGCCTGCGTTCTCGTTTGGAGCCAAGCCGGCCGACAAACCCGCCGAG
AAACCCGCGGACAAGCCCGCGGACAAGCCCATGTTCTCGTTCAAC
Found at i:238749 original size:12 final size:12
Alignment explanation
Indices: 238698--238752 Score: 56
Period size: 12 Copynumber: 4.6 Consensus size: 12
238688 CGTTTGGAGC
*
238698 CAAGCCGGCCGA
1 CAAGCCCGCCGA
*
238710 CAAACCCGCCGA
1 CAAGCCCGCCGA
* * *
238722 GAAACCCGCGGA
1 CAAGCCCGCCGA
*
238734 CAAGCCCGCGGA
1 CAAGCCCGCCGA
238746 CAAGCCC
1 CAAGCCC
238753 ATGTTCTCGT
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
12 37 1.00
ACGTcount: A:0.29, C:0.44, G:0.27, T:0.00
Consensus pattern (12 bp):
CAAGCCCGCCGA
Left flanking sequence: Indices 238198 -- 238697
TTTGGTAAGCCTCTGGAGACCAAGGAGGCTCCCAAAGAGGCACCCAAGGAGGCCAAGGAGGCTCC
CAAGGTGTCGTTTGGGCTCTTTGGCAAGTCCACAGACTCTCAGCCCGAGAAACCCGCCGACAAGA
CCACCGACAAGCCCACCGAGGCAGCCAAGCCCGCGTTCTCGTTTGGCAAGCTGGAACCGTCCCAA
CCAGACAAGCCAGCGTTCTCCTTCGGGTCCAAGGACGAGCCCAAAACCGAGTCCAAGCCCGCGCA
GCCCGCGTTTTCGTTTGGCAAGAAGCCCGAGGAGACCAAGGAGCCCGCGAAACCCGCCTTCTCCT
TTGGCAGCAAGCCCGAGGAGCCCACCAAACCAGCATTTTCGTTTGGCCAGCCCAAAGACACGGCC
ACCAACGACGCCAAGGACGCCTCCGACAAACCGGCGTTCTCGTTTGGCGCCAAACCAACCCAGCC
TGAGGCCGACAAACCCGCCGACAAGCCTGCGTTCTCGTTTGGAGC
Right flanking sequence: Indices 238753 -- 239252
ATGTTCTCGTTCAACAAGCCCGCGGACCCGGCCAAGCCTGCATTTTCTCTCTCCTCCGACGACGG
CAAGCGCAAGCGGAGCGCGGACGAGACCGCCAAGCCGTTGTTTGGCGCCTCCAAGGCCCCCGAGA
GCGAGACCGCCTCGCTGGCGCCCGCCTCCGACGCCTCCAAGCCGCTCTTTGGCTCGCAGCCCGAG
AACGACGACGCCAACCGCAAACGACTGCGTCCCCAGGCGCTGCTGGACAAGCCGGCGTTCAAGTT
TGGCGCGGGCACCGGCAACGGAACCGCGGCCACCCCGCTTTTTGGCGCGAAGCCGGACGAGCTGG
CGGCCAAGGCCCCCGTGTTTGGAGCGTCGCAGTCGTCGAAACCGGCGTTCTCGTTGGGCCTGGGC
GATAAGTCCGCGTCCGCGCTGACCACGCCTGCTCCCGAGAGCAAGCCCGGGTTCTCGTTCGGGAA
GCCCGAGGAGAAGACGGACAAGCCTGGGTTCGCGTTTGGCAAGCC
Found at i:239252 original size:42 final size:42
Alignment explanation
Indices: 239184--239275 Score: 121
Period size: 42 Copynumber: 2.2 Consensus size: 42
239174 CTCCCGAGAG
* * * * *
239184 CAAGCCCGGGTTCTCGTTCGGGAAGCCCGAGGAGAAGACGGA
1 CAAGCCTGGGTTCGCGTTCGGCAAGCCCGAGGAAAAGACCGA
*
239226 CAAGCCTGGGTTCGCGTTTGGCAAGCCCGAGGAAAAGACCGA
1 CAAGCCTGGGTTCGCGTTCGGCAAGCCCGAGGAAAAGACCGA
*
239268 GAAGCCTG
1 CAAGCCTG
239276 CCTTTTCGTT
Statistics
Matches: 43, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.25, C:0.26, G:0.36, T:0.13
Consensus pattern (42 bp):
CAAGCCTGGGTTCGCGTTCGGCAAGCCCGAGGAAAAGACCGA
Left flanking sequence: Indices 238684 -- 239183
TTCTCGTTTGGAGCCAAGCCGGCCGACAAACCCGCCGAGAAACCCGCGGACAAGCCCGCGGACAA
GCCCATGTTCTCGTTCAACAAGCCCGCGGACCCGGCCAAGCCTGCATTTTCTCTCTCCTCCGACG
ACGGCAAGCGCAAGCGGAGCGCGGACGAGACCGCCAAGCCGTTGTTTGGCGCCTCCAAGGCCCCC
GAGAGCGAGACCGCCTCGCTGGCGCCCGCCTCCGACGCCTCCAAGCCGCTCTTTGGCTCGCAGCC
CGAGAACGACGACGCCAACCGCAAACGACTGCGTCCCCAGGCGCTGCTGGACAAGCCGGCGTTCA
AGTTTGGCGCGGGCACCGGCAACGGAACCGCGGCCACCCCGCTTTTTGGCGCGAAGCCGGACGAG
CTGGCGGCCAAGGCCCCCGTGTTTGGAGCGTCGCAGTCGTCGAAACCGGCGTTCTCGTTGGGCCT
GGGCGATAAGTCCGCGTCCGCGCTGACCACGCCTGCTCCCGAGAG
Right flanking sequence: Indices 239276 -- 239775
CCTTTTCGTTTGGCCTGGACAAGCCCGCGCTGACGCCGTTCTCGTTTGGCTCGCAGCCTTCGCAA
CCGTCGCAGCCGTCGCAGCCGTCGCAGCCGTCACAGCCAGCCTCACAGCCGGCCCAGACGCCTGC
GTTTGGCGGCAACAGCACCGGGTTCGGCTCCACGCCCGCGTTTGGCAGCTCCACGCCCGCCGCCA
GTGCCCAGGCCGGCTCGACCCCGTTCTCGTTTGGCAGCAAGCCCGCGGACAAACCGGTGTTTTCC
TTCGACAAGGCCACCACAGACAAGCCCGACTCCGCTGGGTTCGGCTCCTCCACCCCGGCGCCGGC
GTTTGGGGCCGACAAGCCGAAGTTTGACTTTGGCAACGCCACCAAGCCCGCGTTTGGCGGCTCCA
CGGGCTTTGGCCAGCCTCCCGCGGCGTCCACGCCGTTTGGCAACCCGGGCCCGGGCTCCACGACC
TCGTTTGGCACTGCTCTGCGGGAAACCACGCCCGTGGCCACCAAC
Found at i:239286 original size:42 final size:42
Alignment explanation
Indices: 239194--239289 Score: 111
Period size: 42 Copynumber: 2.3 Consensus size: 42
239184 CAAGCCCGGG
* * * * **
239194 TTCTCGTTCGGGAAGCCCGAGGAGAAGACGGACAAGCCTGGG
1 TTCTCGTTTGGCAAGCCCGAGGAAAAGACCGACAAGCCTGCC
* *
239236 TTCGCGTTTGGCAAGCCCGAGGAAAAGACCGAGAAGCCTGCC
1 TTCTCGTTTGGCAAGCCCGAGGAAAAGACCGACAAGCCTGCC
*
239278 TTTTCGTTTGGC
1 TTCTCGTTTGGC
239290 CTGGACAAGC
Statistics
Matches: 44, Mismatches: 10, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
42 44 1.00
ACGTcount: A:0.22, C:0.25, G:0.33, T:0.20
Consensus pattern (42 bp):
TTCTCGTTTGGCAAGCCCGAGGAAAAGACCGACAAGCCTGCC
Left flanking sequence: Indices 238694 -- 239193
GAGCCAAGCCGGCCGACAAACCCGCCGAGAAACCCGCGGACAAGCCCGCGGACAAGCCCATGTTC
TCGTTCAACAAGCCCGCGGACCCGGCCAAGCCTGCATTTTCTCTCTCCTCCGACGACGGCAAGCG
CAAGCGGAGCGCGGACGAGACCGCCAAGCCGTTGTTTGGCGCCTCCAAGGCCCCCGAGAGCGAGA
CCGCCTCGCTGGCGCCCGCCTCCGACGCCTCCAAGCCGCTCTTTGGCTCGCAGCCCGAGAACGAC
GACGCCAACCGCAAACGACTGCGTCCCCAGGCGCTGCTGGACAAGCCGGCGTTCAAGTTTGGCGC
GGGCACCGGCAACGGAACCGCGGCCACCCCGCTTTTTGGCGCGAAGCCGGACGAGCTGGCGGCCA
AGGCCCCCGTGTTTGGAGCGTCGCAGTCGTCGAAACCGGCGTTCTCGTTGGGCCTGGGCGATAAG
TCCGCGTCCGCGCTGACCACGCCTGCTCCCGAGAGCAAGCCCGGG
Right flanking sequence: Indices 239290 -- 239789
CTGGACAAGCCCGCGCTGACGCCGTTCTCGTTTGGCTCGCAGCCTTCGCAACCGTCGCAGCCGTC
GCAGCCGTCGCAGCCGTCACAGCCAGCCTCACAGCCGGCCCAGACGCCTGCGTTTGGCGGCAACA
GCACCGGGTTCGGCTCCACGCCCGCGTTTGGCAGCTCCACGCCCGCCGCCAGTGCCCAGGCCGGC
TCGACCCCGTTCTCGTTTGGCAGCAAGCCCGCGGACAAACCGGTGTTTTCCTTCGACAAGGCCAC
CACAGACAAGCCCGACTCCGCTGGGTTCGGCTCCTCCACCCCGGCGCCGGCGTTTGGGGCCGACA
AGCCGAAGTTTGACTTTGGCAACGCCACCAAGCCCGCGTTTGGCGGCTCCACGGGCTTTGGCCAG
CCTCCCGCGGCGTCCACGCCGTTTGGCAACCCGGGCCCGGGCTCCACGACCTCGTTTGGCACTGC
TCTGCGGGAAACCACGCCCGTGGCCACCAACCCCAACTTCAAGTT
Found at i:239338 original size:9 final size:9
Alignment explanation
Indices: 239326--239378 Score: 79
Period size: 9 Copynumber: 5.9 Consensus size: 9
239316 CTCGTTTGGC
*
239326 TCGCAGCCT
1 TCGCAGCCG
*
239335 TCGCAACCG
1 TCGCAGCCG
239344 TCGCAGCCG
1 TCGCAGCCG
239353 TCGCAGCCG
1 TCGCAGCCG
239362 TCGCAGCCG
1 TCGCAGCCG
*
239371 TCACAGCC
1 TCGCAGCC
239379 AGCCTCACAG
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 40 1.00
ACGTcount: A:0.15, C:0.45, G:0.26, T:0.13
Consensus pattern (9 bp):
TCGCAGCCG
Left flanking sequence: Indices 238826 -- 239325
AGCGGAGCGCGGACGAGACCGCCAAGCCGTTGTTTGGCGCCTCCAAGGCCCCCGAGAGCGAGACC
GCCTCGCTGGCGCCCGCCTCCGACGCCTCCAAGCCGCTCTTTGGCTCGCAGCCCGAGAACGACGA
CGCCAACCGCAAACGACTGCGTCCCCAGGCGCTGCTGGACAAGCCGGCGTTCAAGTTTGGCGCGG
GCACCGGCAACGGAACCGCGGCCACCCCGCTTTTTGGCGCGAAGCCGGACGAGCTGGCGGCCAAG
GCCCCCGTGTTTGGAGCGTCGCAGTCGTCGAAACCGGCGTTCTCGTTGGGCCTGGGCGATAAGTC
CGCGTCCGCGCTGACCACGCCTGCTCCCGAGAGCAAGCCCGGGTTCTCGTTCGGGAAGCCCGAGG
AGAAGACGGACAAGCCTGGGTTCGCGTTTGGCAAGCCCGAGGAAAAGACCGAGAAGCCTGCCTTT
TCGTTTGGCCTGGACAAGCCCGCGCTGACGCCGTTCTCGTTTGGC
Right flanking sequence: Indices 239379 -- 239878
AGCCTCACAGCCGGCCCAGACGCCTGCGTTTGGCGGCAACAGCACCGGGTTCGGCTCCACGCCCG
CGTTTGGCAGCTCCACGCCCGCCGCCAGTGCCCAGGCCGGCTCGACCCCGTTCTCGTTTGGCAGC
AAGCCCGCGGACAAACCGGTGTTTTCCTTCGACAAGGCCACCACAGACAAGCCCGACTCCGCTGG
GTTCGGCTCCTCCACCCCGGCGCCGGCGTTTGGGGCCGACAAGCCGAAGTTTGACTTTGGCAACG
CCACCAAGCCCGCGTTTGGCGGCTCCACGGGCTTTGGCCAGCCTCCCGCGGCGTCCACGCCGTTT
GGCAACCCGGGCCCGGGCTCCACGACCTCGTTTGGCACTGCTCTGCGGGAAACCACGCCCGTGGC
CACCAACCCCAACTTCAAGTTTGCCAAGGGCATTTCCGACAAGCCCGCGGGCCAGGGGATGTTTG
GCAACGCGGCGGCGGGCTTTGGGGCTCCCGCGGCGGCGCCTGCGC
Found at i:239989 original size:18 final size:18
Alignment explanation
Indices: 239968--240003 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
239958 CAGCAACCCT
239968 GGGTTTGGCCAGAACAAC
1 GGGTTTGGCCAGAACAAC
239986 GGGTTTGGCCAGAACAAC
1 GGGTTTGGCCAGAACAAC
240004 CAGACCCCTG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.28, C:0.22, G:0.33, T:0.17
Consensus pattern (18 bp):
GGGTTTGGCCAGAACAAC
Left flanking sequence: Indices 239468 -- 239967
CCAGTGCCCAGGCCGGCTCGACCCCGTTCTCGTTTGGCAGCAAGCCCGCGGACAAACCGGTGTTT
TCCTTCGACAAGGCCACCACAGACAAGCCCGACTCCGCTGGGTTCGGCTCCTCCACCCCGGCGCC
GGCGTTTGGGGCCGACAAGCCGAAGTTTGACTTTGGCAACGCCACCAAGCCCGCGTTTGGCGGCT
CCACGGGCTTTGGCCAGCCTCCCGCGGCGTCCACGCCGTTTGGCAACCCGGGCCCGGGCTCCACG
ACCTCGTTTGGCACTGCTCTGCGGGAAACCACGCCCGTGGCCACCAACCCCAACTTCAAGTTTGC
CAAGGGCATTTCCGACAAGCCCGCGGGCCAGGGGATGTTTGGCAACGCGGCGGCGGGCTTTGGGG
CTCCCGCGGCGGCGCCTGCGCCCATGTTTGGCGGTAGCACGCCAGCGTTTGGCGGGTCGAGCACC
CCTGGCTTTGGGGCCACCCAGACGCCTGGGTTTGGCAGCAACCCT
Right flanking sequence: Indices 240004 -- 240503
CAGACCCCTGGGTTTGGCGGGCAGAACTCGGCCCAGACGTCTGGGTTCGGTGCTCCGAACGGATT
TGGGGGGTCCAACGGGTTTGGCTCGAACGCCAGCAGCCGGCAGTCCACCCCCCAGGCCGGTGGCA
CCGGGTTCAACTTTGGCAATACCACCGCTCCCCAGTTTAGCATGAACCAACCGCAGGCGATGGGG
GGTTCCAACCCGTCGTTCAACTTTGGCATGGCGAAACAGCCCACCCCGGACCCGGCCCAGGTGTT
TGGCGGCACCACCACCCCGCCCAACCCGAACCCGACGCGTCGGATCGCGCCCATGCGCCGTCGCC
GCTACGCGGGCAACCACTAGGTATGTACTGTTAATGAATAGATAGAAAGAGAAGAGGGGTTAACC
GGGAAACCACTGGTGTGTACTGTTAATGAATAGATAGAAGAGAAGAGAGAGGTTGGGTGCTTTGA
AAGACTCAGTTGAAATACCACCACTATAGTTTTTTATTATTCAGA
Found at i:241785 original size:13 final size:13
Alignment explanation
Indices: 241767--241807 Score: 73
Period size: 13 Copynumber: 3.2 Consensus size: 13
241757 GCCTTCAGCT
241767 CTACCTCCTTTAG
1 CTACCTCCTTTAG
241780 CTACCTCCTTTAG
1 CTACCTCCTTTAG
*
241793 CTACCTCCTTCAG
1 CTACCTCCTTTAG
241806 CT
1 CT
241808 CCAACTGCTT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 27 1.00
ACGTcount: A:0.15, C:0.41, G:0.07, T:0.37
Consensus pattern (13 bp):
CTACCTCCTTTAG
Left flanking sequence: Indices 241267 -- 241766
CGAGAGAAGCCCGCATAATAAAGATCTACATATTGTTCAGCACTGAACTAATCAAGGGGTATGGG
GTACGGGTGGGGTACGGTTTGTTCGGAACCTCTGGTCTGGGGTCATCCCACGCACCTTATTATCT
ATCGTTTACGACTCCATCCTTCGTCTGCAGCTGCAACGAACCTTTGATCCACCAACACAGGACAC
CCTCTCCGTCGCTCGAGCCAGAGTCTGTTGAACAATAAAAAAAAGTACCAAACGTTATTTTGGCG
GGTTCTCCAATGACGTAGTGCTCGCATGCCACAAAGAGCCACCCGTCGTAGGCTCACAGGAGGCT
TATCCCCGAGCTACCTATTTCATCATTAAGCTCAAACAAGAATTACCGGTGATGGGCATCGTGGT
TGTGCCACCGGGGCCGATGTGGGTCGGTTTACGAGGCTATGCCTGGTGTCTGGGTGTCCATGCCG
TGTCTGACCCGTGCCTGCTTATTTTGGCTCTACCTGCCTTCAGCT
Right flanking sequence: Indices 241808 -- 242307
CCAACTGCTTCTTCAGCTCCACCTGCTTCACCCTACCACTTCTCCACTCTACTAACTCTACCCTA
CCTCTACCCTACCATTTCTACCCCCATTTCTACCTCTTCTTCCCCACTACGCTACCTCCACCTCA
CTGGCCCTATTACCCCTTCGGGCGATCCATTGTTCGGGTCGATCTGCTGCAACCGAGTCGGGCAG
CGCCCACAGATTCTACCCCCCTGTCTGCTTCCCCCGATCATGTGAAAGCTTCGGTGGGGGCCGCA
TCTCGACCTGCGTTATACGAGGCTGTCCAGCCACCACAGGTATCGTTACACAAATCCCCGTAGCC
CACGCAGGGCCCCACAATGGCCCGCTGCGATGACCAAGCCACCACCCGCAACTTTTTTACAACCA
CTCTACCACCTCTACAACCCCATCACCTCTACCCCACCACATCTACCACACCTCTACCACCCACC
ACCTCAACCCCATCTCTACCACCCCACCACCCCATCTCGACCACC
Found at i:241823 original size:18 final size:18
Alignment explanation
Indices: 241800--241836 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
241790 TAGCTACCTC
241800 CTTCAGCTCCAACTGCTT
1 CTTCAGCTCCAACTGCTT
*
241818 CTTCAGCTCCACCTGCTT
1 CTTCAGCTCCAACTGCTT
241836 C
1 C
241837 ACCCTACCAC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.14, C:0.43, G:0.11, T:0.32
Consensus pattern (18 bp):
CTTCAGCTCCAACTGCTT
Left flanking sequence: Indices 241300 -- 241799
TGTTCAGCACTGAACTAATCAAGGGGTATGGGGTACGGGTGGGGTACGGTTTGTTCGGAACCTCT
GGTCTGGGGTCATCCCACGCACCTTATTATCTATCGTTTACGACTCCATCCTTCGTCTGCAGCTG
CAACGAACCTTTGATCCACCAACACAGGACACCCTCTCCGTCGCTCGAGCCAGAGTCTGTTGAAC
AATAAAAAAAAGTACCAAACGTTATTTTGGCGGGTTCTCCAATGACGTAGTGCTCGCATGCCACA
AAGAGCCACCCGTCGTAGGCTCACAGGAGGCTTATCCCCGAGCTACCTATTTCATCATTAAGCTC
AAACAAGAATTACCGGTGATGGGCATCGTGGTTGTGCCACCGGGGCCGATGTGGGTCGGTTTACG
AGGCTATGCCTGGTGTCTGGGTGTCCATGCCGTGTCTGACCCGTGCCTGCTTATTTTGGCTCTAC
CTGCCTTCAGCTCTACCTCCTTTAGCTACCTCCTTTAGCTACCTC
Right flanking sequence: Indices 241837 -- 242336
ACCCTACCACTTCTCCACTCTACTAACTCTACCCTACCTCTACCCTACCATTTCTACCCCCATTT
CTACCTCTTCTTCCCCACTACGCTACCTCCACCTCACTGGCCCTATTACCCCTTCGGGCGATCCA
TTGTTCGGGTCGATCTGCTGCAACCGAGTCGGGCAGCGCCCACAGATTCTACCCCCCTGTCTGCT
TCCCCCGATCATGTGAAAGCTTCGGTGGGGGCCGCATCTCGACCTGCGTTATACGAGGCTGTCCA
GCCACCACAGGTATCGTTACACAAATCCCCGTAGCCCACGCAGGGCCCCACAATGGCCCGCTGCG
ATGACCAAGCCACCACCCGCAACTTTTTTACAACCACTCTACCACCTCTACAACCCCATCACCTC
TACCCCACCACATCTACCACACCTCTACCACCCACCACCTCAACCCCATCTCTACCACCCCACCA
CCCCATCTCGACCACCCCATCTCTACAACGCCCCACCTGCTACCA
Found at i:242233 original size:14 final size:14
Alignment explanation
Indices: 242214--242274 Score: 56
Period size: 14 Copynumber: 4.4 Consensus size: 14
242204 CACCTCTACA
*
242214 ACCCCATCACCTCT
1 ACCCCACCACCTCT
*
242228 ACCCCACCACATCT
1 ACCCCACCACCTCT
242242 A--CCA-CACCTCT
1 ACCCCACCACCTCT
*
242253 ACCACCCACCACCTCA
1 A-C-CCCACCACCTCT
242269 ACCCCA
1 ACCCCA
242275 TCTCTACCAC
Statistics
Matches: 38, Mismatches: 4, Indels: 10
0.73 0.08 0.19
Matches are distributed among these distances:
11 7 0.18
12 3 0.08
14 17 0.45
15 4 0.11
16 7 0.18
ACGTcount: A:0.28, C:0.59, G:0.00, T:0.13
Consensus pattern (14 bp):
ACCCCACCACCTCT
Left flanking sequence: Indices 241714 -- 242213
CCATGCCGTGTCTGACCCGTGCCTGCTTATTTTGGCTCTACCTGCCTTCAGCTCTACCTCCTTTA
GCTACCTCCTTTAGCTACCTCCTTCAGCTCCAACTGCTTCTTCAGCTCCACCTGCTTCACCCTAC
CACTTCTCCACTCTACTAACTCTACCCTACCTCTACCCTACCATTTCTACCCCCATTTCTACCTC
TTCTTCCCCACTACGCTACCTCCACCTCACTGGCCCTATTACCCCTTCGGGCGATCCATTGTTCG
GGTCGATCTGCTGCAACCGAGTCGGGCAGCGCCCACAGATTCTACCCCCCTGTCTGCTTCCCCCG
ATCATGTGAAAGCTTCGGTGGGGGCCGCATCTCGACCTGCGTTATACGAGGCTGTCCAGCCACCA
CAGGTATCGTTACACAAATCCCCGTAGCCCACGCAGGGCCCCACAATGGCCCGCTGCGATGACCA
AGCCACCACCCGCAACTTTTTTACAACCACTCTACCACCTCTACA
Right flanking sequence: Indices 242275 -- 242774
TCTCTACCACCCCACCACCCCATCTCGACCACCCCATCTCTACAACGCCCCACCTGCTACCATCC
CCCAACCCACGGGCCGTTGACGCGGCATGGCCCTGGAATTGACGGCGGTGAAGCCACCTTTTGTC
ACCCAAATAGGCAAACAACGAAGGATCAGCCATTCATCGGCGTGGCCGCCACGCAGGAGGTCTAA
AAGAAATCGTGGGGACGCCTGCATCCTCCGCCAGCACCCGCCCTCGTGTATTGCTGTCGTGCGAG
ACCCGTCGTTTCTTTTGCCCAGCAGGCCCACCCGACCCCCCAGCGCACGATGCCATCGGGGGATG
CAAGCAGCGAAGGTGCCATGCGTCGGGCACTGCACACGGCCGTTCGCTGTCGCCAATTATACTGT
GATTGGCCACACGCTAATGCACGAAATAGGCAACCGACGCCCTCCACGCTCGGCTACGACGCATC
GGGAAGGAGCACTGCAAGAACCCTGCAACTGCAAGAGGTATCACA
Found at i:242279 original size:27 final size:28
Alignment explanation
Indices: 242228--242293 Score: 89
Period size: 27 Copynumber: 2.4 Consensus size: 28
242218 CATCACCTCT
* *
242228 ACCCCACCACATCTACCACACCTCTACC
1 ACCCCACCACCTCAACCACACCTCTACC
* *
242256 A-CCCACCACCTCAACCCCATCTCTACC
1 ACCCCACCACCTCAACCACACCTCTACC
242283 ACCCCACCACC
1 ACCCCACCACC
242294 CCATCTCGAC
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
27 23 0.70
28 10 0.30
ACGTcount: A:0.27, C:0.61, G:0.00, T:0.12
Consensus pattern (28 bp):
ACCCCACCACCTCAACCACACCTCTACC
Left flanking sequence: Indices 241728 -- 242227
ACCCGTGCCTGCTTATTTTGGCTCTACCTGCCTTCAGCTCTACCTCCTTTAGCTACCTCCTTTAG
CTACCTCCTTCAGCTCCAACTGCTTCTTCAGCTCCACCTGCTTCACCCTACCACTTCTCCACTCT
ACTAACTCTACCCTACCTCTACCCTACCATTTCTACCCCCATTTCTACCTCTTCTTCCCCACTAC
GCTACCTCCACCTCACTGGCCCTATTACCCCTTCGGGCGATCCATTGTTCGGGTCGATCTGCTGC
AACCGAGTCGGGCAGCGCCCACAGATTCTACCCCCCTGTCTGCTTCCCCCGATCATGTGAAAGCT
TCGGTGGGGGCCGCATCTCGACCTGCGTTATACGAGGCTGTCCAGCCACCACAGGTATCGTTACA
CAAATCCCCGTAGCCCACGCAGGGCCCCACAATGGCCCGCTGCGATGACCAAGCCACCACCCGCA
ACTTTTTTACAACCACTCTACCACCTCTACAACCCCATCACCTCT
Right flanking sequence: Indices 242294 -- 242793
CCATCTCGACCACCCCATCTCTACAACGCCCCACCTGCTACCATCCCCCAACCCACGGGCCGTTG
ACGCGGCATGGCCCTGGAATTGACGGCGGTGAAGCCACCTTTTGTCACCCAAATAGGCAAACAAC
GAAGGATCAGCCATTCATCGGCGTGGCCGCCACGCAGGAGGTCTAAAAGAAATCGTGGGGACGCC
TGCATCCTCCGCCAGCACCCGCCCTCGTGTATTGCTGTCGTGCGAGACCCGTCGTTTCTTTTGCC
CAGCAGGCCCACCCGACCCCCCAGCGCACGATGCCATCGGGGGATGCAAGCAGCGAAGGTGCCAT
GCGTCGGGCACTGCACACGGCCGTTCGCTGTCGCCAATTATACTGTGATTGGCCACACGCTAATG
CACGAAATAGGCAACCGACGCCCTCCACGCTCGGCTACGACGCATCGGGAAGGAGCACTGCAAGA
ACCCTGCAACTGCAAGAGGTATCACAGTCTGACCCAGTGTGTAAT
Found at i:242285 original size:20 final size:21
Alignment explanation
Indices: 242260--242310 Score: 68
Period size: 22 Copynumber: 2.4 Consensus size: 21
242250 TCTACCACCC
* *
242260 ACCACCTCA-ACCCCATCTCT
1 ACCACCCCACACCCCATCTCG
242280 ACCACCCCACCACCCCATCTCG
1 ACCACCCCA-CACCCCATCTCG
242302 ACCACCCCA
1 ACCACCCCA
242311 TCTCTACAAC
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
20 8 0.30
22 19 0.70
ACGTcount: A:0.25, C:0.61, G:0.02, T:0.12
Consensus pattern (21 bp):
ACCACCCCACACCCCATCTCG
Left flanking sequence: Indices 241760 -- 242259
TTCAGCTCTACCTCCTTTAGCTACCTCCTTTAGCTACCTCCTTCAGCTCCAACTGCTTCTTCAGC
TCCACCTGCTTCACCCTACCACTTCTCCACTCTACTAACTCTACCCTACCTCTACCCTACCATTT
CTACCCCCATTTCTACCTCTTCTTCCCCACTACGCTACCTCCACCTCACTGGCCCTATTACCCCT
TCGGGCGATCCATTGTTCGGGTCGATCTGCTGCAACCGAGTCGGGCAGCGCCCACAGATTCTACC
CCCCTGTCTGCTTCCCCCGATCATGTGAAAGCTTCGGTGGGGGCCGCATCTCGACCTGCGTTATA
CGAGGCTGTCCAGCCACCACAGGTATCGTTACACAAATCCCCGTAGCCCACGCAGGGCCCCACAA
TGGCCCGCTGCGATGACCAAGCCACCACCCGCAACTTTTTTACAACCACTCTACCACCTCTACAA
CCCCATCACCTCTACCCCACCACATCTACCACACCTCTACCACCC
Right flanking sequence: Indices 242311 -- 242810
TCTCTACAACGCCCCACCTGCTACCATCCCCCAACCCACGGGCCGTTGACGCGGCATGGCCCTGG
AATTGACGGCGGTGAAGCCACCTTTTGTCACCCAAATAGGCAAACAACGAAGGATCAGCCATTCA
TCGGCGTGGCCGCCACGCAGGAGGTCTAAAAGAAATCGTGGGGACGCCTGCATCCTCCGCCAGCA
CCCGCCCTCGTGTATTGCTGTCGTGCGAGACCCGTCGTTTCTTTTGCCCAGCAGGCCCACCCGAC
CCCCCAGCGCACGATGCCATCGGGGGATGCAAGCAGCGAAGGTGCCATGCGTCGGGCACTGCACA
CGGCCGTTCGCTGTCGCCAATTATACTGTGATTGGCCACACGCTAATGCACGAAATAGGCAACCG
ACGCCCTCCACGCTCGGCTACGACGCATCGGGAAGGAGCACTGCAAGAACCCTGCAACTGCAAGA
GGTATCACAGTCTGACCCAGTGTGTAATCCCACTATTCCTATTCC
Found at i:242296 original size:22 final size:22
Alignment explanation
Indices: 242269--242310 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
242259 CACCACCTCA
*
242269 ACCCCATCTCTACCACCCCACC
1 ACCCCATCTCGACCACCCCACC
242291 ACCCCATCTCGACCACCCCA
1 ACCCCATCTCGACCACCCCA
242311 TCTCTACAAC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.24, C:0.62, G:0.02, T:0.12
Consensus pattern (22 bp):
ACCCCATCTCGACCACCCCACC
Left flanking sequence: Indices 241769 -- 242268
ACCTCCTTTAGCTACCTCCTTTAGCTACCTCCTTCAGCTCCAACTGCTTCTTCAGCTCCACCTGC
TTCACCCTACCACTTCTCCACTCTACTAACTCTACCCTACCTCTACCCTACCATTTCTACCCCCA
TTTCTACCTCTTCTTCCCCACTACGCTACCTCCACCTCACTGGCCCTATTACCCCTTCGGGCGAT
CCATTGTTCGGGTCGATCTGCTGCAACCGAGTCGGGCAGCGCCCACAGATTCTACCCCCCTGTCT
GCTTCCCCCGATCATGTGAAAGCTTCGGTGGGGGCCGCATCTCGACCTGCGTTATACGAGGCTGT
CCAGCCACCACAGGTATCGTTACACAAATCCCCGTAGCCCACGCAGGGCCCCACAATGGCCCGCT
GCGATGACCAAGCCACCACCCGCAACTTTTTTACAACCACTCTACCACCTCTACAACCCCATCAC
CTCTACCCCACCACATCTACCACACCTCTACCACCCACCACCTCA
Right flanking sequence: Indices 242311 -- 242810
TCTCTACAACGCCCCACCTGCTACCATCCCCCAACCCACGGGCCGTTGACGCGGCATGGCCCTGG
AATTGACGGCGGTGAAGCCACCTTTTGTCACCCAAATAGGCAAACAACGAAGGATCAGCCATTCA
TCGGCGTGGCCGCCACGCAGGAGGTCTAAAAGAAATCGTGGGGACGCCTGCATCCTCCGCCAGCA
CCCGCCCTCGTGTATTGCTGTCGTGCGAGACCCGTCGTTTCTTTTGCCCAGCAGGCCCACCCGAC
CCCCCAGCGCACGATGCCATCGGGGGATGCAAGCAGCGAAGGTGCCATGCGTCGGGCACTGCACA
CGGCCGTTCGCTGTCGCCAATTATACTGTGATTGGCCACACGCTAATGCACGAAATAGGCAACCG
ACGCCCTCCACGCTCGGCTACGACGCATCGGGAAGGAGCACTGCAAGAACCCTGCAACTGCAAGA
GGTATCACAGTCTGACCCAGTGTGTAATCCCACTATTCCTATTCC
Found at i:243582 original size:45 final size:43
Alignment explanation
Indices: 243533--243698 Score: 192
Period size: 42 Copynumber: 3.8 Consensus size: 43
243523 CGGCTGCGCC
243533 ACGACGACGACCGGCGGTCTGAGCGCCGTGAGCGCCGCCACCGGG
1 ACGACGACG-CC-GCGGTCTGAGCGCCGTGAGCGCCGCCACCGGG
* * * * * *
243578 ACGACGACGACCGCCGCTCGGAACGGCGTGAACGGCGCCACCGGG
1 ACGACGACG-CCG-CGGTCTGAGCGCCGTGAGCGCCGCCACCGGG
* * *
243623 ACGACGACG-CGCGGTCCGAGCGCAGAGAGCGCCGCCACCGGG
1 ACGACGACGCCGCGGTCTGAGCGCCGTGAGCGCCGCCACCGGG
*
243665 ACGACGACGCC-CGTTCTGAGCGCCGTGAGCGCCG
1 ACGACGACGCCGCGGTCTGAGCGCCGTGAGCGCCG
243699 GGCTCTGCGC
Statistics
Matches: 101, Mismatches: 18, Indels: 7
0.80 0.14 0.06
Matches are distributed among these distances:
42 51 0.50
43 3 0.03
44 1 0.01
45 46 0.46
ACGTcount: A:0.17, C:0.38, G:0.39, T:0.06
Consensus pattern (43 bp):
ACGACGACGCCGCGGTCTGAGCGCCGTGAGCGCCGCCACCGGG
Left flanking sequence: Indices 243033 -- 243532
ATACCAACGACTGTACCATGGGGCACGGTTCCGCGTCACCTAGCCGAGGGGAAAATCCGGGGAAC
GACGATGAAGGGCCCGCCAAACGAAACCCACGCCCGCCACCACCACCACAGGCCCCCTCCACCCG
CGCACTCCCGCTTTCCCGCTCCGGAGTGCACGCAGCGAGCCCCACCCGCAGCACGTCGCGCACAT
GAATTTTCGGGGGCCTCCCGGATATATAAGACGCTGCCACCCCCGGTTCTGCAACAAGGCCATGT
ACATCAAAAAGCCCAACTACTCGGGGTCTAGCTCCCCGCTCCGCATCCCGTCGTTGCGGTCGCGG
TCGAAACTGAGACGCGACCGCGGCGACGACGACGCCGACCCCCAGGTGGACGACCAGCTGGTGGG
CCTGGGCCAGATCTACCACACCAACTCCTACGACGACCGTCGCGAGAGAAGACGTGCGCTGCGCT
CGCACGACGACATGAAGCGGCTGCGGTCCGCGGGCCGGCTGCGCC
Right flanking sequence: Indices 243699 -- 244198
GGCTCTGCGCCACGACCGCGACGACCGTGGTGACCACCACCGCTCCGAGCGCAAGCTGAAGAAGC
TGTCGCGCAACGGAGGAGCCGCTGCCGGCGGTGCTGCGGCCGCGCCTGCCCGCAAGAAGGTGGAG
ATCCCCAAGAACGTCAACTACCGGCCCGGGCGCATCCAGCTGTTGCTGGCGGAGCAGGAGCCCAT
GCACAAGCAGTTCTGGGCGTACTTTTTGACCTACTGGGGCTACGAGTTGCTGATTGACCCGCTGG
AGCTCAAGTACAGCGACTGCTTTGTGGCGTCGCTGGGGTTGCCGGGCGGCGACGCCAACGGGTTG
CTGCGCACCGCCACCCGCGGGTCGATGCAGCTGGGCACCACGCTGGCGCTGAAGAAGAAGAAGGG
GTTGTTTGGCGGCGGTGGCGGGTCCACCACCGGGACGCAGTCGCAGCACGTCACCCTCAACGCGC
CCGCGGACCTGCCGCGGATGCGCGACATTGCCACCAAGCTGTCGC
Found at i:245025 original size:24 final size:24
Alignment explanation
Indices: 244997--245043 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 24
244987 AAGTTCCTTG
*
244997 CCGAGGTGTTTGAGGCGCA-CTACC
1 CCGA-GTGCTTGAGGCGCATCTACC
*
245021 CCGAGTGCTTGGGGCGCATCTAC
1 CCGAGTGCTTGAGGCGCATCTAC
245044 GTGCACAACG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 12 0.60
24 8 0.40
ACGTcount: A:0.15, C:0.30, G:0.34, T:0.21
Consensus pattern (24 bp):
CCGAGTGCTTGAGGCGCATCTACC
Left flanking sequence: Indices 244497 -- 244996
CACCAACCAGGACATTGGCGCCATCACCCCGTTGCAGTGGCAGCAGATGTTTATGGGGGCGGCCC
GCAACGACTTGCCCGACAACTTCTTGTTGCGGTTCATGCGGGCGCGCAAGTGGAACACCGACAAC
GCGCTCAAAATGCTTTCCAACCTGATCAAGTGGCGGATGGAGTTCCCCGCGGACAAGTGGGTCAA
GGAGGCCGACGGCCCGCTGTTCTTGCACGGGACCAACCAGGGGTTCATCAAGAACTTGACCACGG
AGAAGTCGTGGATCAAGGGCGAGGACAACAACCAGAACCCGATTTTCTGGTTCCAGGCCAAGAAG
CACTTTGGGCTGGACTCGCCGTCGGACGAGACCCAGCGGTACGCCGTCACCACCATCGAGTGGGT
GCGGTTGTTCCTCCGCGAGGTGAACGAGCTGGTGGACACGGTGCTGATTGTGTTTGACTTGACCG
GGTTCACGTTGAAGAACGCCGACTACACCACCATCAAGTTCCTTG
Right flanking sequence: Indices 245044 -- 245543
GTGCACAACGCGCCGTGGATCTTTTCCACCGTGTGGAACATCATCAAGAACTGGTTGGACCCCGT
GGTGGCGTCCAAGATTGTGTTTACCAAGAACTTCAAGGACATGTCGGGGTACATTTCGCCCGACT
ACATTCCCACCGAGCTCGGGGGCATTGACACCCTGGGGCCCGAGTACCCGACGCCGCAGCCCGGC
GACGACAAGCCGCCCAAGGACAAGGACGCCACCTACCGCCGGTTGATGAAGGAGCGCGACGTGTT
GATGATGCGGTTGTTTGACTGCACCCGCAAGTGGGTGGAGCTGACCAACCCCGACGTGCTGGCGC
AGTACTTGGAAGAGAAGATTGGCATCAACATCGAGTTGTCGTACAACTACATTGCCTTGGACCCC
TACGTGCGCAACCCGTGTCCCTACGACCGGCTCGGGTCGCTCGATGTGCGCAACTGATTGCTTTC
GTTTTTGTTTCTATAGAAGATTACACATGGTACAAAACTGGTGTT
Done.