Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: scaffold76
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 170467
ACGTcount: A:0.22, C:0.29, G:0.28, T:0.22
Warning! 4 characters in sequence are not A, C, G, or T
File 1 of 2
Found at i:77 original size:22 final size:22
Alignment explanation
Indices: 52--96 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 22
42 AGCCCTAAGA
52 CACACAAACACCAC-ACACACAC
1 CACACAAACACCACAAC-CACAC
*
74 CACACACACACCACAACCACAC
1 CACACAAACACCACAACCACAC
96 C
1 C
97 CCCACCCCCC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 19 0.90
23 2 0.10
ACGTcount: A:0.47, C:0.53, G:0.00, T:0.00
Consensus pattern (22 bp):
CACACAAACACCACAACCACAC
Left flanking sequence: Indices 1 -- 51
CCAAAAAACACATAACAATACACCCTAAATTACCGTAGACGAGCCCTAAGA
Right flanking sequence: Indices 97 -- 596
CCCACCCCCCTCTACCACCCCACTCTACCACCCTACCCACTTCCACCTCGCACTCTTTCCACCCA
CCTCGCACTCTCACCTCACCCACCTCCACCACCCCTGCACACAACTATACAAACCGTTCCACGTC
GCCAGACCCCATGGACCAACGCAACAGCCTGGGCGGTGCCAACGGCGGCAAGAGCCAGTGGCAGC
AGCTGCCGCCAGCAGCCCAACAGCCGCAATACACCCTCCCCGGGGTCATCAACTACCTCACGCTG
GAGTTCACCAACCTCGAGCGGTTCAAGATCATGACCCAGATGGAGAAGCTGGAGATGAAGTACCG
CATCATCCAGCTCCAGGGCGAGCTCAACAGCCTCAAGTTCGTCAACAACAAGCAGGCCGCGCGCA
TTTTCCAGCTAGAGCAGGAGAACGCGAGGTTGCGGGAGCGGAGGAGCGAGGGAGGCAGCCCCAAC
CGCGACGACTACGTGGACCCCAACATCCCCGGGGAGCTTCCCGAG
Found at i:96 original size:11 final size:11
Alignment explanation
Indices: 52--88 Score: 65
Period size: 11 Copynumber: 3.4 Consensus size: 11
42 AGCCCTAAGA
*
52 CACACAAACAC
1 CACACACACAC
63 CACACACACAC
1 CACACACACAC
74 CACACACACAC
1 CACACACACAC
85 CACA
1 CACA
89 ACCACACCCC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
11 25 1.00
ACGTcount: A:0.49, C:0.51, G:0.00, T:0.00
Consensus pattern (11 bp):
CACACACACAC
Left flanking sequence: Indices 1 -- 51
CCAAAAAACACATAACAATACACCCTAAATTACCGTAGACGAGCCCTAAGA
Right flanking sequence: Indices 89 -- 588
ACCACACCCCCACCCCCCTCTACCACCCCACTCTACCACCCTACCCACTTCCACCTCGCACTCTT
TCCACCCACCTCGCACTCTCACCTCACCCACCTCCACCACCCCTGCACACAACTATACAAACCGT
TCCACGTCGCCAGACCCCATGGACCAACGCAACAGCCTGGGCGGTGCCAACGGCGGCAAGAGCCA
GTGGCAGCAGCTGCCGCCAGCAGCCCAACAGCCGCAATACACCCTCCCCGGGGTCATCAACTACC
TCACGCTGGAGTTCACCAACCTCGAGCGGTTCAAGATCATGACCCAGATGGAGAAGCTGGAGATG
AAGTACCGCATCATCCAGCTCCAGGGCGAGCTCAACAGCCTCAAGTTCGTCAACAACAAGCAGGC
CGCGCGCATTTTCCAGCTAGAGCAGGAGAACGCGAGGTTGCGGGAGCGGAGGAGCGAGGGAGGCA
GCCCCAACCGCGACGACTACGTGGACCCCAACATCCCCGGGGAGC
Found at i:114 original size:13 final size:13
Alignment explanation
Indices: 98--129 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
88 AACCACACCC
*
98 CCACCCCCCTCTA
1 CCACCCCACTCTA
111 CCACCCCACTCTA
1 CCACCCCACTCTA
124 CCACCC
1 CCACCC
130 TACCCACTTC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.19, C:0.69, G:0.00, T:0.12
Consensus pattern (13 bp):
CCACCCCACTCTA
Left flanking sequence: Indices 1 -- 97
CCAAAAAACACATAACAATACACCCTAAATTACCGTAGACGAGCCCTAAGACACACAAACACCAC
ACACACACCACACACACACCACAACCACACCC
Right flanking sequence: Indices 130 -- 629
TACCCACTTCCACCTCGCACTCTTTCCACCCACCTCGCACTCTCACCTCACCCACCTCCACCACC
CCTGCACACAACTATACAAACCGTTCCACGTCGCCAGACCCCATGGACCAACGCAACAGCCTGGG
CGGTGCCAACGGCGGCAAGAGCCAGTGGCAGCAGCTGCCGCCAGCAGCCCAACAGCCGCAATACA
CCCTCCCCGGGGTCATCAACTACCTCACGCTGGAGTTCACCAACCTCGAGCGGTTCAAGATCATG
ACCCAGATGGAGAAGCTGGAGATGAAGTACCGCATCATCCAGCTCCAGGGCGAGCTCAACAGCCT
CAAGTTCGTCAACAACAAGCAGGCCGCGCGCATTTTCCAGCTAGAGCAGGAGAACGCGAGGTTGC
GGGAGCGGAGGAGCGAGGGAGGCAGCCCCAACCGCGACGACTACGTGGACCCCAACATCCCCGGG
GAGCTTCCCGAGGTGGACTTGGCGGCGATCAAGGCCACCCGCGCC
Found at i:184 original size:22 final size:20
Alignment explanation
Indices: 129--187 Score: 64
Period size: 22 Copynumber: 2.8 Consensus size: 20
119 CTCTACCACC
129 CTACCCACTTCCACCTCGCACT
1 CTACCCAC--CCACCTCGCACT
**
151 CTTTCCACCCACCTCGCACT
1 CTACCCACCCACCTCGCACT
171 CTCACCTCACCCACCTC
1 CT-ACC-CACCCACCTC
188 CACCACCCCT
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
20 14 0.45
21 1 0.03
22 16 0.52
ACGTcount: A:0.17, C:0.58, G:0.03, T:0.22
Consensus pattern (20 bp):
CTACCCACCCACCTCGCACT
Left flanking sequence: Indices 1 -- 128
CCAAAAAACACATAACAATACACCCTAAATTACCGTAGACGAGCCCTAAGACACACAAACACCAC
ACACACACCACACACACACCACAACCACACCCCCACCCCCCTCTACCACCCCACTCTACCACC
Right flanking sequence: Indices 188 -- 687
CACCACCCCTGCACACAACTATACAAACCGTTCCACGTCGCCAGACCCCATGGACCAACGCAACA
GCCTGGGCGGTGCCAACGGCGGCAAGAGCCAGTGGCAGCAGCTGCCGCCAGCAGCCCAACAGCCG
CAATACACCCTCCCCGGGGTCATCAACTACCTCACGCTGGAGTTCACCAACCTCGAGCGGTTCAA
GATCATGACCCAGATGGAGAAGCTGGAGATGAAGTACCGCATCATCCAGCTCCAGGGCGAGCTCA
ACAGCCTCAAGTTCGTCAACAACAAGCAGGCCGCGCGCATTTTCCAGCTAGAGCAGGAGAACGCG
AGGTTGCGGGAGCGGAGGAGCGAGGGAGGCAGCCCCAACCGCGACGACTACGTGGACCCCAACAT
CCCCGGGGAGCTTCCCGAGGTGGACTTGGCGGCGATCAAGGCCACCCGCGCCCAGTTGACCCGGC
TGATGAAGGAGATCGTCCACCTCTTGAAGACGCCGCTGGTGAAGA
Found at i:1135 original size:15 final size:15
Alignment explanation
Indices: 1117--1153 Score: 65
Period size: 15 Copynumber: 2.5 Consensus size: 15
1107 GGACTGGGCT
1117 TGGGAGGATTAAGTC
1 TGGGAGGATTAAGTC
*
1132 TGGGAGGATTAGGTC
1 TGGGAGGATTAAGTC
1147 TGGGAGG
1 TGGGAGG
1154 GCTGGGAGGA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.22, C:0.05, G:0.49, T:0.24
Consensus pattern (15 bp):
TGGGAGGATTAAGTC
Left flanking sequence: Indices 617 -- 1116
GGCCACCCGCGCCCAGTTGACCCGGCTGATGAAGGAGATCGTCCACCTCTTGAAGACGCCGCTGG
TGAAGACGGTCAACCTGTTGGGCCTCCCTCCGCCCGAGGAGGCGGCCTCCAACGAGTTCGAGGTG
TTGGTGGCCCCGGAGGACGAGTACGCGTACCCCGCACCCAAACGGGACCGGGACCACCACCGCTA
CTTTGACGACAAAATGCAGGACCTCGACATGGCCCAGCCGCTGGACTCGCAGCTCCAGCACGAGT
TCGACGAGGTGATGCGCAACGCAGACACCCACGAGGAGGGGCTCCGGGCGTTTTTGGGCGACGAG
CCTCGGGGCGGGCCCTACGAGCTGGACGCAGACACCGTGGTGGAGGGGGAGCTCCACACCCACAG
CAACGTGTTGCTGCGGTTTGGCGAGGACGACGAGCGTCCGGTGCGGAAGGCTCCTCCGGGCGAGG
AGCCTGGAGTTGTGGGTGGTCTGGGAGGTCTGGGAGGACTGGGCT
Right flanking sequence: Indices 1154 -- 1653
GCTGGGAGGACTGAGTCTTGGAGGACTGGAAACCACGGGCCCAGCAGTGGCTCCCCAGGCGGTGG
CAGCAGCGCTGGCTGCGATTGCGGCCGCCAGCGACGACGGGAGCCTTGCCCGGGCCAAGGAGGTC
GGGTCCGGGAAGGACTTGGCTGGGTTGATGGGCAAGGACGAGGGGAAGGAGGACAAGACGGTGAA
GGAGTCGCGCAAGGAGGTGTTCAAGGAGCCGTCCAAGGATGCCAGGGACACGAAGAGTGTCTCAG
GCCAGTCCAAGAGTGCAAAGGACCAGTTGAAGGACCAGTTGAAGGACCAGTTGAAGGACCAGTCG
AAGGAGCATTCTAAGGATGCCTCCAAGGATGCCTCCAAGGATGCCTCCAAGGATGCCTCCAAGGA
TGCCTCCAAGGATGCCTCCAAGGATGCCTCCAAGGATGCCTCCAAGGANNNNTCCAAGGATGCCT
CCAAGGATGCCTCCAAGGATGCCTCCAAGGATGCCTCCAAGGACG
Found at i:1171 original size:24 final size:24
Alignment explanation
Indices: 1131--1182 Score: 61
Period size: 24 Copynumber: 2.2 Consensus size: 24
1121 AGGATTAAGT
* *
1131 CTGGGAGGATTAGGTCTGGGAGGG
1 CTGGGAGGATGAGGTCTGGGAGGA
*
1155 CTGGGAGGACTGA-GTCTTGGAGGA
1 CTGGGAGGA-TGAGGTCTGGGAGGA
1179 CTGG
1 CTGG
1183 AAACCACGGG
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
24 22 0.92
25 2 0.08
ACGTcount: A:0.17, C:0.12, G:0.50, T:0.21
Consensus pattern (24 bp):
CTGGGAGGATGAGGTCTGGGAGGA
Left flanking sequence: Indices 631 -- 1130
AGTTGACCCGGCTGATGAAGGAGATCGTCCACCTCTTGAAGACGCCGCTGGTGAAGACGGTCAAC
CTGTTGGGCCTCCCTCCGCCCGAGGAGGCGGCCTCCAACGAGTTCGAGGTGTTGGTGGCCCCGGA
GGACGAGTACGCGTACCCCGCACCCAAACGGGACCGGGACCACCACCGCTACTTTGACGACAAAA
TGCAGGACCTCGACATGGCCCAGCCGCTGGACTCGCAGCTCCAGCACGAGTTCGACGAGGTGATG
CGCAACGCAGACACCCACGAGGAGGGGCTCCGGGCGTTTTTGGGCGACGAGCCTCGGGGCGGGCC
CTACGAGCTGGACGCAGACACCGTGGTGGAGGGGGAGCTCCACACCCACAGCAACGTGTTGCTGC
GGTTTGGCGAGGACGACGAGCGTCCGGTGCGGAAGGCTCCTCCGGGCGAGGAGCCTGGAGTTGTG
GGTGGTCTGGGAGGTCTGGGAGGACTGGGCTTGGGAGGATTAAGT
Right flanking sequence: Indices 1183 -- 1682
AAACCACGGGCCCAGCAGTGGCTCCCCAGGCGGTGGCAGCAGCGCTGGCTGCGATTGCGGCCGCC
AGCGACGACGGGAGCCTTGCCCGGGCCAAGGAGGTCGGGTCCGGGAAGGACTTGGCTGGGTTGAT
GGGCAAGGACGAGGGGAAGGAGGACAAGACGGTGAAGGAGTCGCGCAAGGAGGTGTTCAAGGAGC
CGTCCAAGGATGCCAGGGACACGAAGAGTGTCTCAGGCCAGTCCAAGAGTGCAAAGGACCAGTTG
AAGGACCAGTTGAAGGACCAGTTGAAGGACCAGTCGAAGGAGCATTCTAAGGATGCCTCCAAGGA
TGCCTCCAAGGATGCCTCCAAGGATGCCTCCAAGGATGCCTCCAAGGATGCCTCCAAGGATGCCT
CCAAGGATGCCTCCAAGGANNNNTCCAAGGATGCCTCCAAGGATGCCTCCAAGGATGCCTCCAAG
GATGCCTCCAAGGACGCCTCCAAGGACGCCTCCAACCTGACGTTT
Found at i:1448 original size:12 final size:12
Alignment explanation
Indices: 1431--1483 Score: 97
Period size: 12 Copynumber: 4.4 Consensus size: 12
1421 CAAGAGTGCA
1431 AAGGACCAGTTG
1 AAGGACCAGTTG
1443 AAGGACCAGTTG
1 AAGGACCAGTTG
1455 AAGGACCAGTTG
1 AAGGACCAGTTG
*
1467 AAGGACCAGTCG
1 AAGGACCAGTTG
1479 AAGGA
1 AAGGA
1484 GCATTCTAAG
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
12 40 1.00
ACGTcount: A:0.36, C:0.17, G:0.34, T:0.13
Consensus pattern (12 bp):
AAGGACCAGTTG
Left flanking sequence: Indices 931 -- 1430
TGGGCGACGAGCCTCGGGGCGGGCCCTACGAGCTGGACGCAGACACCGTGGTGGAGGGGGAGCTC
CACACCCACAGCAACGTGTTGCTGCGGTTTGGCGAGGACGACGAGCGTCCGGTGCGGAAGGCTCC
TCCGGGCGAGGAGCCTGGAGTTGTGGGTGGTCTGGGAGGTCTGGGAGGACTGGGCTTGGGAGGAT
TAAGTCTGGGAGGATTAGGTCTGGGAGGGCTGGGAGGACTGAGTCTTGGAGGACTGGAAACCACG
GGCCCAGCAGTGGCTCCCCAGGCGGTGGCAGCAGCGCTGGCTGCGATTGCGGCCGCCAGCGACGA
CGGGAGCCTTGCCCGGGCCAAGGAGGTCGGGTCCGGGAAGGACTTGGCTGGGTTGATGGGCAAGG
ACGAGGGGAAGGAGGACAAGACGGTGAAGGAGTCGCGCAAGGAGGTGTTCAAGGAGCCGTCCAAG
GATGCCAGGGACACGAAGAGTGTCTCAGGCCAGTCCAAGAGTGCA
Right flanking sequence: Indices 1484 -- 1983
GCATTCTAAGGATGCCTCCAAGGATGCCTCCAAGGATGCCTCCAAGGATGCCTCCAAGGATGCCT
CCAAGGATGCCTCCAAGGATGCCTCCAAGGATGCCTCCAAGGANNNNTCCAAGGATGCCTCCAAG
GATGCCTCCAAGGATGCCTCCAAGGATGCCTCCAAGGACGCCTCCAAGGACGCCTCCAACCTGAC
GTTTCCCCCCTCCAAGCATGAACCCACCCGCAGACCGTCCGACACCCGCAGACCGTCCGACTCGG
CCACCGCGGCCCGCAGAGCCTCGGACCGCGCCTCGGACCGCCTCGACCGCTCAGCCTCTGAAAAG
TCCCTCGACCGGCTCGACAGAACCTCATCCAAACCCACCACCCCCCGCAAGAAGCTCACCCAGGC
GCTGGCCTCGCCCAGCCACATCCTCGGAACCCCCGTGGGCCGCAGCCCGCGCGGGTCGCCCGTGG
CCACCACCATCCCCCGCAAGTTCACCCACGACGACGTCGAGATCA
Found at i:1506 original size:12 final size:12
Alignment explanation
Indices: 1491--1672 Score: 310
Period size: 12 Copynumber: 15.2 Consensus size: 12
1481 GGAGCATTCT
1491 AAGGATGCCTCC
1 AAGGATGCCTCC
1503 AAGGATGCCTCC
1 AAGGATGCCTCC
1515 AAGGATGCCTCC
1 AAGGATGCCTCC
1527 AAGGATGCCTCC
1 AAGGATGCCTCC
1539 AAGGATGCCTCC
1 AAGGATGCCTCC
1551 AAGGATGCCTCC
1 AAGGATGCCTCC
1563 AAGGATGCCTCC
1 AAGGATGCCTCC
1575 AAGGATGCCTCC
1 AAGGATGCCTCC
****
1587 AAGGANNNNTCC
1 AAGGATGCCTCC
1599 AAGGATGCCTCC
1 AAGGATGCCTCC
1611 AAGGATGCCTCC
1 AAGGATGCCTCC
1623 AAGGATGCCTCC
1 AAGGATGCCTCC
1635 AAGGATGCCTCC
1 AAGGATGCCTCC
*
1647 AAGGACGCCTCC
1 AAGGATGCCTCC
*
1659 AAGGACGCCTCC
1 AAGGATGCCTCC
1671 AA
1 AA
1673 CCTGACGTTT
Statistics
Matches: 161, Mismatches: 9, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 161 1.00
ACGTcount: A:0.26, C:0.33, G:0.24, T:0.15
Consensus pattern (12 bp):
AAGGATGCCTCC
Left flanking sequence: Indices 991 -- 1490
AGCTCCACACCCACAGCAACGTGTTGCTGCGGTTTGGCGAGGACGACGAGCGTCCGGTGCGGAAG
GCTCCTCCGGGCGAGGAGCCTGGAGTTGTGGGTGGTCTGGGAGGTCTGGGAGGACTGGGCTTGGG
AGGATTAAGTCTGGGAGGATTAGGTCTGGGAGGGCTGGGAGGACTGAGTCTTGGAGGACTGGAAA
CCACGGGCCCAGCAGTGGCTCCCCAGGCGGTGGCAGCAGCGCTGGCTGCGATTGCGGCCGCCAGC
GACGACGGGAGCCTTGCCCGGGCCAAGGAGGTCGGGTCCGGGAAGGACTTGGCTGGGTTGATGGG
CAAGGACGAGGGGAAGGAGGACAAGACGGTGAAGGAGTCGCGCAAGGAGGTGTTCAAGGAGCCGT
CCAAGGATGCCAGGGACACGAAGAGTGTCTCAGGCCAGTCCAAGAGTGCAAAGGACCAGTTGAAG
GACCAGTTGAAGGACCAGTTGAAGGACCAGTCGAAGGAGCATTCT
Right flanking sequence: Indices 1673 -- 2172
CCTGACGTTTCCCCCCTCCAAGCATGAACCCACCCGCAGACCGTCCGACACCCGCAGACCGTCCG
ACTCGGCCACCGCGGCCCGCAGAGCCTCGGACCGCGCCTCGGACCGCCTCGACCGCTCAGCCTCT
GAAAAGTCCCTCGACCGGCTCGACAGAACCTCATCCAAACCCACCACCCCCCGCAAGAAGCTCAC
CCAGGCGCTGGCCTCGCCCAGCCACATCCTCGGAACCCCCGTGGGCCGCAGCCCGCGCGGGTCGC
CCGTGGCCACCACCATCCCCCGCAAGTTCACCCACGACGACGTCGAGATCAGCTGGACCCCCTCG
ACGCGCGGGGTCAACCACTACGACGTGCGGGTGTTCCGCAAGGGCTCCAACGTGGCTGCAGGGCT
CGTGGGGCTGAGCCGGACCTCCAGTCTCAACCACATTCTCCAGTGCTACCCCGTGGCCGTGGACG
ACTCCAGTGCCAGTCTCGTGGTGGTGGACAGCCAGGCCGGGGTGC
Found at i:1726 original size:18 final size:18
Alignment explanation
Indices: 1703--1739 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
1693 AGCATGAACC
1703 CACCCGCAGACCGTCCGA
1 CACCCGCAGACCGTCCGA
1721 CACCCGCAGACCGTCCGA
1 CACCCGCAGACCGTCCGA
1739 C
1 C
1740 TCGGCCACCG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.22, C:0.51, G:0.22, T:0.05
Consensus pattern (18 bp):
CACCCGCAGACCGTCCGA
Left flanking sequence: Indices 1203 -- 1702
GCTCCCCAGGCGGTGGCAGCAGCGCTGGCTGCGATTGCGGCCGCCAGCGACGACGGGAGCCTTGC
CCGGGCCAAGGAGGTCGGGTCCGGGAAGGACTTGGCTGGGTTGATGGGCAAGGACGAGGGGAAGG
AGGACAAGACGGTGAAGGAGTCGCGCAAGGAGGTGTTCAAGGAGCCGTCCAAGGATGCCAGGGAC
ACGAAGAGTGTCTCAGGCCAGTCCAAGAGTGCAAAGGACCAGTTGAAGGACCAGTTGAAGGACCA
GTTGAAGGACCAGTCGAAGGAGCATTCTAAGGATGCCTCCAAGGATGCCTCCAAGGATGCCTCCA
AGGATGCCTCCAAGGATGCCTCCAAGGATGCCTCCAAGGATGCCTCCAAGGATGCCTCCAAGGAN
NNNTCCAAGGATGCCTCCAAGGATGCCTCCAAGGATGCCTCCAAGGATGCCTCCAAGGACGCCTC
CAAGGACGCCTCCAACCTGACGTTTCCCCCCTCCAAGCATGAACC
Right flanking sequence: Indices 1740 -- 2239
TCGGCCACCGCGGCCCGCAGAGCCTCGGACCGCGCCTCGGACCGCCTCGACCGCTCAGCCTCTGA
AAAGTCCCTCGACCGGCTCGACAGAACCTCATCCAAACCCACCACCCCCCGCAAGAAGCTCACCC
AGGCGCTGGCCTCGCCCAGCCACATCCTCGGAACCCCCGTGGGCCGCAGCCCGCGCGGGTCGCCC
GTGGCCACCACCATCCCCCGCAAGTTCACCCACGACGACGTCGAGATCAGCTGGACCCCCTCGAC
GCGCGGGGTCAACCACTACGACGTGCGGGTGTTCCGCAAGGGCTCCAACGTGGCTGCAGGGCTCG
TGGGGCTGAGCCGGACCTCCAGTCTCAACCACATTCTCCAGTGCTACCCCGTGGCCGTGGACGAC
TCCAGTGCCAGTCTCGTGGTGGTGGACAGCCAGGCCGGGGTGCTAGCGGTGCACTTGAGCCCCTC
CGGGGCCCGCGAGAAGATCCTCCACTCGGTGCTGGGGCTCGTGTC
Found at i:2654 original size:16 final size:16
Alignment explanation
Indices: 2633--2673 Score: 64
Period size: 16 Copynumber: 2.6 Consensus size: 16
2623 AGAGGGGCGT
*
2633 GTAGATAATAGGAGAA
1 GTAGATAATAAGAGAA
*
2649 GTAGATAGTAAGAGAA
1 GTAGATAATAAGAGAA
2665 GTAGATAAT
1 GTAGATAAT
2674 CGTATGAGAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.49, C:0.00, G:0.29, T:0.22
Consensus pattern (16 bp):
GTAGATAATAAGAGAA
Left flanking sequence: Indices 2133 -- 2632
AGTGCCAGTCTCGTGGTGGTGGACAGCCAGGCCGGGGTGCTAGCGGTGCACTTGAGCCCCTCCGG
GGCCCGCGAGAAGATCCTCCACTCGGTGCTGGGGCTCGTGTCGCTGGAGGTGGTGGAGTTCTTCT
CCAAGGAGCTGTCGGCGGAGCTGCACTTTGGCCTCGTGGTCAACGGGTACGACGGCGAGCCCCGC
GAGTTCTTTTCCAAGGTGCTCCATCTCATTTACGCCAAGGGAGGCATGCTGAGTGCCCAGGTGGG
CTTTTTCCGGGCCGGGTTCTTTTCTAGTAACAAGAAGCCGGTGGAGTTTAGCCAGTGGGCGGTGA
ACGTGCTGGCCGACTACGCGCTCCCGGAGACGGTGAAGGTGCCCAAGCCCGGGGCGCTCGTGACG
TGCCAGGACAACTCGTTGGGGATGTACGAGTTGGTGTACAAGGTGGACGGGGTGCCGTACTTGCT
TAATTTGGTTTCCCAGGAGTTGGTCCCGCAGTAATAGAGGGGCGT
Right flanking sequence: Indices 2674 -- 3173
CGTATGAGAAGTAAAGGGAGTGATAGTGGAGTGATAAATACCTACTAGTAGACTAGCGGGTCTAG
TAATTCAGAGACCCGAGAATTTGTAGTCGTAGGGCAGTATGTTCTGGTTCAAAGCGATAGGCAAG
GACAGGACAAGGACAGGACAGGTGGTACATAAGGACAGGACTATAACTACTAGATTAAACGTACA
GATGGGTGTTGCGACCCGAATTCAGGGTCAAAAGCCAAGGGTCCGAAGGCACCGTTGGTGAAATT
CTTGTTCTAAGCCATGGTGAATGTCTTAGATTGAATGGTTCGAAATGCGGTTATGGAATTAGATT
GAGAACCCAATAGTCGGGAGACTATATTCTATATGGTGTGACAATGTCTGGGAATGTAGTTTGCG
TAACCTATCCAAGTTTACATTCAATTAACTACCTATTGTTAGATGACTTCCATTTGGTTGATGCA
TAACCCTCTATGGGAGCCAACAATAAGTATACTTGAAACTGGGCC
Found at i:3759 original size:23 final size:23
Alignment explanation
Indices: 3729--3774 Score: 76
Period size: 23 Copynumber: 2.0 Consensus size: 23
3719 AGTGTCGAGG
3729 AGGGTGCCGATTTGGGTGC-GATT
1 AGGGTGCCGA-TTGGGTGCTGATT
3752 AGGGTGCCGATTGGGTGCTGATT
1 AGGGTGCCGATTGGGTGCTGATT
3775 GGGAACGAGC
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
22 8 0.36
23 14 0.64
ACGTcount: A:0.13, C:0.13, G:0.43, T:0.30
Consensus pattern (23 bp):
AGGGTGCCGATTGGGTGCTGATT
Left flanking sequence: Indices 3229 -- 3728
CCCGTGTTTCCACTGTTTGAATAACCCGGTTTCTACACTGATCAACACCTAGTATACAGCGCCTT
GGTTTAAAGAGCCTAATTCAATACGCCAGTACATACCATAACCTATCACTACTATACGTTAAGCT
CCAAGCGCTGGGGGAGTTCGGGGGCCGCCTTCTCCGCGTAGCGCCCAGACACCGACAACTTGAAC
ACCACAAACTCCATCACCACCACCAGGTAGTAGTGGTCGCAGTCCCACTCGCGCTCCAACGAGAC
AAACGCGCCAAAGAACCGCGCAAGCGCCAGCGAAAGCGCGCCGAGGTCAAACCCCATCCCCCAGG
TGAGGGTGACGTAGTGGAGCAACACCACCAGGATGGCGGCGGAGAAGTAGCTGAGGGTGGGCTCG
ACGCGAACAGCGCGCACGGGCTTGGGGGCAGCGGGCTTGAGAGAAGAGGTGGAAGACATAGTGGT
GGAAAGAAAAGTAGGGGTGTTTGTGGTTTTATAGTAGTGTCGAGG
Right flanking sequence: Indices 3775 -- 4274
GGGAACGAGCGAGAGCGAAAACGGCGGGATAGACCAGAATTGACGATAATTGACGAGAGAAAGTC
TAGACCACAATGATGGACCAAGTGTGTGGATCGGAAGCCAATGGCCTGGTAGTGTGGTGTTAGGG
TAAGATCGGTGGTGGGCTACAATGGTAGGTGTTGATCTATCACCTGGACGAGTTGGGCCCAAAAT
TATGGTTTACTGAGATAGCCAAGGGCCACCAGAGAAACACAGTCATGGTGGCGAACAGAGTCATG
GTGGCGAACAAGGTCAATGGGAAGTAAACCCCCACTGGGCCATGGCGCTTTTTTGAAAAACACCC
AATGACCACCCCAACCGGATGAGACCTGGTTTCTACCAATTGTCGCTTGAACAGCCACCAGGCCA
CCAAAATTCCCACTCACATTCCACCAACATTGACACCACTTACTGGAATACCCCTTACTCCGTCC
TCATGCGTCCTCCTTCTACCTCATTCTACCATTCTCCTCCTCCTC
Found at i:3775 original size:11 final size:11
Alignment explanation
Indices: 3730--3777 Score: 62
Period size: 11 Copynumber: 4.3 Consensus size: 11
3720 GTGTCGAGGA
3730 GGGTGCCGATTT
1 GGGTGCCGA-TT
3742 GGGTG-CGATT
1 GGGTGCCGATT
3752 AGGGTGCCGATT
1 -GGGTGCCGATT
*
3764 GGGTGCTGATT
1 GGGTGCCGATT
3775 GGG
1 GGG
3778 AACGAGCGAG
Statistics
Matches: 33, Mismatches: 1, Indels: 5
0.85 0.03 0.13
Matches are distributed among these distances:
10 2 0.06
11 21 0.64
12 10 0.30
ACGTcount: A:0.10, C:0.12, G:0.48, T:0.29
Consensus pattern (11 bp):
GGGTGCCGATT
Left flanking sequence: Indices 3230 -- 3729
CCGTGTTTCCACTGTTTGAATAACCCGGTTTCTACACTGATCAACACCTAGTATACAGCGCCTTG
GTTTAAAGAGCCTAATTCAATACGCCAGTACATACCATAACCTATCACTACTATACGTTAAGCTC
CAAGCGCTGGGGGAGTTCGGGGGCCGCCTTCTCCGCGTAGCGCCCAGACACCGACAACTTGAACA
CCACAAACTCCATCACCACCACCAGGTAGTAGTGGTCGCAGTCCCACTCGCGCTCCAACGAGACA
AACGCGCCAAAGAACCGCGCAAGCGCCAGCGAAAGCGCGCCGAGGTCAAACCCCATCCCCCAGGT
GAGGGTGACGTAGTGGAGCAACACCACCAGGATGGCGGCGGAGAAGTAGCTGAGGGTGGGCTCGA
CGCGAACAGCGCGCACGGGCTTGGGGGCAGCGGGCTTGAGAGAAGAGGTGGAAGACATAGTGGTG
GAAAGAAAAGTAGGGGTGTTTGTGGTTTTATAGTAGTGTCGAGGA
Right flanking sequence: Indices 3778 -- 4277
AACGAGCGAGAGCGAAAACGGCGGGATAGACCAGAATTGACGATAATTGACGAGAGAAAGTCTAG
ACCACAATGATGGACCAAGTGTGTGGATCGGAAGCCAATGGCCTGGTAGTGTGGTGTTAGGGTAA
GATCGGTGGTGGGCTACAATGGTAGGTGTTGATCTATCACCTGGACGAGTTGGGCCCAAAATTAT
GGTTTACTGAGATAGCCAAGGGCCACCAGAGAAACACAGTCATGGTGGCGAACAGAGTCATGGTG
GCGAACAAGGTCAATGGGAAGTAAACCCCCACTGGGCCATGGCGCTTTTTTGAAAAACACCCAAT
GACCACCCCAACCGGATGAGACCTGGTTTCTACCAATTGTCGCTTGAACAGCCACCAGGCCACCA
AAATTCCCACTCACATTCCACCAACATTGACACCACTTACTGGAATACCCCTTACTCCGTCCTCA
TGCGTCCTCCTTCTACCTCATTCTACCATTCTCCTCCTCCTCTGC
Found at i:4050 original size:18 final size:18
Alignment explanation
Indices: 4005--4044 Score: 71
Period size: 18 Copynumber: 2.2 Consensus size: 18
3995 CCACCAGAGA
*
4005 AACACAGTCATGGTGGCG
1 AACAGAGTCATGGTGGCG
4023 AACAGAGTCATGGTGGCG
1 AACAGAGTCATGGTGGCG
4041 AACA
1 AACA
4045 AGGTCAATGG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.33, C:0.20, G:0.33, T:0.15
Consensus pattern (18 bp):
AACAGAGTCATGGTGGCG
Left flanking sequence: Indices 3505 -- 4004
CGCGCAAGCGCCAGCGAAAGCGCGCCGAGGTCAAACCCCATCCCCCAGGTGAGGGTGACGTAGTG
GAGCAACACCACCAGGATGGCGGCGGAGAAGTAGCTGAGGGTGGGCTCGACGCGAACAGCGCGCA
CGGGCTTGGGGGCAGCGGGCTTGAGAGAAGAGGTGGAAGACATAGTGGTGGAAAGAAAAGTAGGG
GTGTTTGTGGTTTTATAGTAGTGTCGAGGAGGGTGCCGATTTGGGTGCGATTAGGGTGCCGATTG
GGTGCTGATTGGGAACGAGCGAGAGCGAAAACGGCGGGATAGACCAGAATTGACGATAATTGACG
AGAGAAAGTCTAGACCACAATGATGGACCAAGTGTGTGGATCGGAAGCCAATGGCCTGGTAGTGT
GGTGTTAGGGTAAGATCGGTGGTGGGCTACAATGGTAGGTGTTGATCTATCACCTGGACGAGTTG
GGCCCAAAATTATGGTTTACTGAGATAGCCAAGGGCCACCAGAGA
Right flanking sequence: Indices 4045 -- 4544
AGGTCAATGGGAAGTAAACCCCCACTGGGCCATGGCGCTTTTTTGAAAAACACCCAATGACCACC
CCAACCGGATGAGACCTGGTTTCTACCAATTGTCGCTTGAACAGCCACCAGGCCACCAAAATTCC
CACTCACATTCCACCAACATTGACACCACTTACTGGAATACCCCTTACTCCGTCCTCATGCGTCC
TCCTTCTACCTCATTCTACCATTCTCCTCCTCCTCTGCCTCCATCCTCGTGCGTCCTCATTCTAC
CTCCTTCTACTCATCTACTCCTCCTCTTCGTTCTTGCTCCTCGTTCTTCCTCTTCTGTTCCTCCT
CTTTTCCTCCTCTTTTCCTCCTCTTTTCCTCCTCTCCTCTTCCTCTCCTCCACCTCTCCTCTCTC
AACAATGGCAATTCCCGGTTATAACGGTTATCCTACATGACTACTATAGTTAGCAACACCCGTTC
CCGCGGCCCCCGACCGCTCCCACCACCAAACAACACCAACCACAC
Found at i:4313 original size:56 final size:56
Alignment explanation
Indices: 4222--4331 Score: 159
Period size: 56 Copynumber: 2.0 Consensus size: 56
4212 ATACCCCTTA
* * *
4222 CTCCGTCCTCATGCGTCCTCCTTCTACCTCATTCTAC-CATTCTCCTCCTCCTCTGC
1 CTCCATCCTCATGCGTCCTCATTCTACCTCATTCTACTCA-TCTACTCCTCCTCTGC
* *
4278 CTCCATCCTCGTGCGTCCTCATTCTACCTCCTTCTACTCATCTACTCCTCCTCT
1 CTCCATCCTCATGCGTCCTCATTCTACCTCATTCTACTCATCTACTCCTCCTCT
4332 TCGTTCTTGC
Statistics
Matches: 48, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
56 46 0.96
57 2 0.04
ACGTcount: A:0.10, C:0.47, G:0.06, T:0.36
Consensus pattern (56 bp):
CTCCATCCTCATGCGTCCTCATTCTACCTCATTCTACTCATCTACTCCTCCTCTGC
Left flanking sequence: Indices 3722 -- 4221
GTCGAGGAGGGTGCCGATTTGGGTGCGATTAGGGTGCCGATTGGGTGCTGATTGGGAACGAGCGA
GAGCGAAAACGGCGGGATAGACCAGAATTGACGATAATTGACGAGAGAAAGTCTAGACCACAATG
ATGGACCAAGTGTGTGGATCGGAAGCCAATGGCCTGGTAGTGTGGTGTTAGGGTAAGATCGGTGG
TGGGCTACAATGGTAGGTGTTGATCTATCACCTGGACGAGTTGGGCCCAAAATTATGGTTTACTG
AGATAGCCAAGGGCCACCAGAGAAACACAGTCATGGTGGCGAACAGAGTCATGGTGGCGAACAAG
GTCAATGGGAAGTAAACCCCCACTGGGCCATGGCGCTTTTTTGAAAAACACCCAATGACCACCCC
AACCGGATGAGACCTGGTTTCTACCAATTGTCGCTTGAACAGCCACCAGGCCACCAAAATTCCCA
CTCACATTCCACCAACATTGACACCACTTACTGGAATACCCCTTA
Right flanking sequence: Indices 4332 -- 4831
TCGTTCTTGCTCCTCGTTCTTCCTCTTCTGTTCCTCCTCTTTTCCTCCTCTTTTCCTCCTCTTTT
CCTCCTCTCCTCTTCCTCTCCTCCACCTCTCCTCTCTCAACAATGGCAATTCCCGGTTATAACGG
TTATCCTACATGACTACTATAGTTAGCAACACCCGTTCCCGCGGCCCCCGACCGCTCCCACCACC
AAACAACACCAACCACACACCCACCAACACACCACACCACCCCCACACAACACCCACACAACCTA
CGCCTACAAACCACTCCCCACCCCCATCCACCCTTCGTCTTTCCCACCTTTCGCCCGCTCTCACC
CGCGCCTGTCAAAATTTCTTTTCCGCGTACGCGCGGCCCACGCCCATCGCATCGCTAATTTCCAC
GCAGCCGGCCATCTCCCGCCCCATGTCGAAGTCGTTTGACGATTTTATAAAGCAGCAGCAGCAGC
AGGCGCAGAAGCCGCGTGGCTTCCAGTACTCGGGCCAGCTGTTCG
Found at i:4413 original size:22 final size:22
Alignment explanation
Indices: 4366--4431 Score: 78
Period size: 22 Copynumber: 3.0 Consensus size: 22
4356 CTTCTGTTCC
** *
4366 TCCTCTTTTCCTCCTCTTTTCC
1 TCCTCTTTTCCTCCTCTCCTCT
4388 TCCTCTTTTCCTCCTCTCCTCT
1 TCCTCTTTTCCTCCTCTCCTCT
** *
4410 TCCTCTCCTCCACCTCTCCTCT
1 TCCTCTTTTCCTCCTCTCCTCT
4432 CTCAACAATG
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 38 1.00
ACGTcount: A:0.02, C:0.52, G:0.00, T:0.47
Consensus pattern (22 bp):
TCCTCTTTTCCTCCTCTCCTCT
Left flanking sequence: Indices 3866 -- 4365
TGGATCGGAAGCCAATGGCCTGGTAGTGTGGTGTTAGGGTAAGATCGGTGGTGGGCTACAATGGT
AGGTGTTGATCTATCACCTGGACGAGTTGGGCCCAAAATTATGGTTTACTGAGATAGCCAAGGGC
CACCAGAGAAACACAGTCATGGTGGCGAACAGAGTCATGGTGGCGAACAAGGTCAATGGGAAGTA
AACCCCCACTGGGCCATGGCGCTTTTTTGAAAAACACCCAATGACCACCCCAACCGGATGAGACC
TGGTTTCTACCAATTGTCGCTTGAACAGCCACCAGGCCACCAAAATTCCCACTCACATTCCACCA
ACATTGACACCACTTACTGGAATACCCCTTACTCCGTCCTCATGCGTCCTCCTTCTACCTCATTC
TACCATTCTCCTCCTCCTCTGCCTCCATCCTCGTGCGTCCTCATTCTACCTCCTTCTACTCATCT
ACTCCTCCTCTTCGTTCTTGCTCCTCGTTCTTCCTCTTCTGTTCC
Right flanking sequence: Indices 4432 -- 4931
CTCAACAATGGCAATTCCCGGTTATAACGGTTATCCTACATGACTACTATAGTTAGCAACACCCG
TTCCCGCGGCCCCCGACCGCTCCCACCACCAAACAACACCAACCACACACCCACCAACACACCAC
ACCACCCCCACACAACACCCACACAACCTACGCCTACAAACCACTCCCCACCCCCATCCACCCTT
CGTCTTTCCCACCTTTCGCCCGCTCTCACCCGCGCCTGTCAAAATTTCTTTTCCGCGTACGCGCG
GCCCACGCCCATCGCATCGCTAATTTCCACGCAGCCGGCCATCTCCCGCCCCATGTCGAAGTCGT
TTGACGATTTTATAAAGCAGCAGCAGCAGCAGGCGCAGAAGCCGCGTGGCTTCCAGTACTCGGGC
CAGCTGTTCGTCCCCGGCGCCGACTACCTGGGCTACCAGCTGGGCCACCACGGGTACGGGTCGTA
CCAGTTCCAGCCCCAGGGGATGCAGACGCCGCTGGGCCCGTCGCT
Found at i:4420 original size:14 final size:11
Alignment explanation
Indices: 4341--4404 Score: 92
Period size: 11 Copynumber: 5.6 Consensus size: 11
4331 TTCGTTCTTG
4341 CTCCTCGTTCTTC
1 CTCCTC-TT-TTC
* *
4354 CTCTTCTGTTC
1 CTCCTCTTTTC
4365 CTCCTCTTTTC
1 CTCCTCTTTTC
4376 CTCCTCTTTTC
1 CTCCTCTTTTC
4387 CTCCTCTTTTC
1 CTCCTCTTTTC
4398 CTCCTCT
1 CTCCTCT
4405 CCTCTTCCTC
Statistics
Matches: 47, Mismatches: 4, Indels: 2
0.89 0.08 0.04
Matches are distributed among these distances:
11 41 0.87
12 1 0.02
13 5 0.11
ACGTcount: A:0.00, C:0.45, G:0.03, T:0.52
Consensus pattern (11 bp):
CTCCTCTTTTC
Left flanking sequence: Indices 3841 -- 4340
AGACCACAATGATGGACCAAGTGTGTGGATCGGAAGCCAATGGCCTGGTAGTGTGGTGTTAGGGT
AAGATCGGTGGTGGGCTACAATGGTAGGTGTTGATCTATCACCTGGACGAGTTGGGCCCAAAATT
ATGGTTTACTGAGATAGCCAAGGGCCACCAGAGAAACACAGTCATGGTGGCGAACAGAGTCATGG
TGGCGAACAAGGTCAATGGGAAGTAAACCCCCACTGGGCCATGGCGCTTTTTTGAAAAACACCCA
ATGACCACCCCAACCGGATGAGACCTGGTTTCTACCAATTGTCGCTTGAACAGCCACCAGGCCAC
CAAAATTCCCACTCACATTCCACCAACATTGACACCACTTACTGGAATACCCCTTACTCCGTCCT
CATGCGTCCTCCTTCTACCTCATTCTACCATTCTCCTCCTCCTCTGCCTCCATCCTCGTGCGTCC
TCATTCTACCTCCTTCTACTCATCTACTCCTCCTCTTCGTTCTTG
Right flanking sequence: Indices 4405 -- 4904
CCTCTTCCTCTCCTCCACCTCTCCTCTCTCAACAATGGCAATTCCCGGTTATAACGGTTATCCTA
CATGACTACTATAGTTAGCAACACCCGTTCCCGCGGCCCCCGACCGCTCCCACCACCAAACAACA
CCAACCACACACCCACCAACACACCACACCACCCCCACACAACACCCACACAACCTACGCCTACA
AACCACTCCCCACCCCCATCCACCCTTCGTCTTTCCCACCTTTCGCCCGCTCTCACCCGCGCCTG
TCAAAATTTCTTTTCCGCGTACGCGCGGCCCACGCCCATCGCATCGCTAATTTCCACGCAGCCGG
CCATCTCCCGCCCCATGTCGAAGTCGTTTGACGATTTTATAAAGCAGCAGCAGCAGCAGGCGCAG
AAGCCGCGTGGCTTCCAGTACTCGGGCCAGCTGTTCGTCCCCGGCGCCGACTACCTGGGCTACCA
GCTGGGCCACCACGGGTACGGGTCGTACCAGTTCCAGCCCCAGGG
Found at i:4553 original size:15 final size:17
Alignment explanation
Indices: 4533--4588 Score: 55
Period size: 16 Copynumber: 3.4 Consensus size: 17
4523 CACCAAACAA
4533 CACCAAC-CA-CACACC
1 CACCAACACACCACACC
4548 CACCAACACACCACA-C
1 CACCAACACACCACACC
** *
4564 CACCCCCACACAACACC
1 CACCAACACACCACACC
4581 CACACAAC
1 CAC-CAAC
4589 CTACGCCTAC
Statistics
Matches: 32, Mismatches: 5, Indels: 5
0.76 0.12 0.12
Matches are distributed among these distances:
15 7 0.22
16 15 0.47
17 8 0.25
18 2 0.06
ACGTcount: A:0.41, C:0.59, G:0.00, T:0.00
Consensus pattern (17 bp):
CACCAACACACCACACC
Left flanking sequence: Indices 4033 -- 4532
TGGTGGCGAACAAGGTCAATGGGAAGTAAACCCCCACTGGGCCATGGCGCTTTTTTGAAAAACAC
CCAATGACCACCCCAACCGGATGAGACCTGGTTTCTACCAATTGTCGCTTGAACAGCCACCAGGC
CACCAAAATTCCCACTCACATTCCACCAACATTGACACCACTTACTGGAATACCCCTTACTCCGT
CCTCATGCGTCCTCCTTCTACCTCATTCTACCATTCTCCTCCTCCTCTGCCTCCATCCTCGTGCG
TCCTCATTCTACCTCCTTCTACTCATCTACTCCTCCTCTTCGTTCTTGCTCCTCGTTCTTCCTCT
TCTGTTCCTCCTCTTTTCCTCCTCTTTTCCTCCTCTTTTCCTCCTCTCCTCTTCCTCTCCTCCAC
CTCTCCTCTCTCAACAATGGCAATTCCCGGTTATAACGGTTATCCTACATGACTACTATAGTTAG
CAACACCCGTTCCCGCGGCCCCCGACCGCTCCCACCACCAAACAA
Right flanking sequence: Indices 4589 -- 5088
CTACGCCTACAAACCACTCCCCACCCCCATCCACCCTTCGTCTTTCCCACCTTTCGCCCGCTCTC
ACCCGCGCCTGTCAAAATTTCTTTTCCGCGTACGCGCGGCCCACGCCCATCGCATCGCTAATTTC
CACGCAGCCGGCCATCTCCCGCCCCATGTCGAAGTCGTTTGACGATTTTATAAAGCAGCAGCAGC
AGCAGGCGCAGAAGCCGCGTGGCTTCCAGTACTCGGGCCAGCTGTTCGTCCCCGGCGCCGACTAC
CTGGGCTACCAGCTGGGCCACCACGGGTACGGGTCGTACCAGTTCCAGCCCCAGGGGATGCAGAC
GCCGCTGGGCCCGTCGCTGTACGCCACCACGCCCGCGGAGTCGCGCACGGGCACCCCCGGGCCCC
AGGACCTGACCACCTCGTTGACGCTGTCGCTCAACAAGCTCAAGATCGAGGTCCCGTTCGACCAG
GAGCTCGACGCGATCATGGCCGCCAGCAAAATCGCCGAGGTCCGC
Found at i:4563 original size:28 final size:28
Alignment explanation
Indices: 4518--4574 Score: 69
Period size: 28 Copynumber: 2.0 Consensus size: 28
4508 CCCGACCGCT
*
4518 CCCACCACCAAACAACACCAACCACACA
1 CCCACCAACAAACAACACCAACCACACA
* * * *
4546 CCCACCAACACACCACACCACCCCCACA
1 CCCACCAACAAACAACACCAACCACACA
4574 C
1 C
4575 AACACCCACA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
28 24 1.00
ACGTcount: A:0.40, C:0.60, G:0.00, T:0.00
Consensus pattern (28 bp):
CCCACCAACAAACAACACCAACCACACA
Left flanking sequence: Indices 4018 -- 4517
TGGCGAACAGAGTCATGGTGGCGAACAAGGTCAATGGGAAGTAAACCCCCACTGGGCCATGGCGC
TTTTTTGAAAAACACCCAATGACCACCCCAACCGGATGAGACCTGGTTTCTACCAATTGTCGCTT
GAACAGCCACCAGGCCACCAAAATTCCCACTCACATTCCACCAACATTGACACCACTTACTGGAA
TACCCCTTACTCCGTCCTCATGCGTCCTCCTTCTACCTCATTCTACCATTCTCCTCCTCCTCTGC
CTCCATCCTCGTGCGTCCTCATTCTACCTCCTTCTACTCATCTACTCCTCCTCTTCGTTCTTGCT
CCTCGTTCTTCCTCTTCTGTTCCTCCTCTTTTCCTCCTCTTTTCCTCCTCTTTTCCTCCTCTCCT
CTTCCTCTCCTCCACCTCTCCTCTCTCAACAATGGCAATTCCCGGTTATAACGGTTATCCTACAT
GACTACTATAGTTAGCAACACCCGTTCCCGCGGCCCCCGACCGCT
Right flanking sequence: Indices 4575 -- 5074
AACACCCACACAACCTACGCCTACAAACCACTCCCCACCCCCATCCACCCTTCGTCTTTCCCACC
TTTCGCCCGCTCTCACCCGCGCCTGTCAAAATTTCTTTTCCGCGTACGCGCGGCCCACGCCCATC
GCATCGCTAATTTCCACGCAGCCGGCCATCTCCCGCCCCATGTCGAAGTCGTTTGACGATTTTAT
AAAGCAGCAGCAGCAGCAGGCGCAGAAGCCGCGTGGCTTCCAGTACTCGGGCCAGCTGTTCGTCC
CCGGCGCCGACTACCTGGGCTACCAGCTGGGCCACCACGGGTACGGGTCGTACCAGTTCCAGCCC
CAGGGGATGCAGACGCCGCTGGGCCCGTCGCTGTACGCCACCACGCCCGCGGAGTCGCGCACGGG
CACCCCCGGGCCCCAGGACCTGACCACCTCGTTGACGCTGTCGCTCAACAAGCTCAAGATCGAGG
TCCCGTTCGACCAGGAGCTCGACGCGATCATGGCCGCCAGCAAAA
Found at i:4584 original size:11 final size:11
Alignment explanation
Indices: 4529--4588 Score: 61
Period size: 11 Copynumber: 5.5 Consensus size: 11
4519 CCACCACCAA
*
4529 ACAACACCAAC
1 ACAACACCCAC
4540 -CACACACCCAC
1 ACA-ACACCCAC
4551 -CAACACACCAC
1 ACAACAC-CCAC
* *
4562 ACCACCCCCAC
1 ACAACACCCAC
4573 ACAACACCCAC
1 ACAACACCCAC
4584 ACAAC
1 ACAAC
4589 CTACGCCTAC
Statistics
Matches: 41, Mismatches: 5, Indels: 6
0.79 0.10 0.12
Matches are distributed among these distances:
10 6 0.15
11 31 0.76
12 4 0.10
ACGTcount: A:0.43, C:0.57, G:0.00, T:0.00
Consensus pattern (11 bp):
ACAACACCCAC
Left flanking sequence: Indices 4029 -- 4528
GTCATGGTGGCGAACAAGGTCAATGGGAAGTAAACCCCCACTGGGCCATGGCGCTTTTTTGAAAA
ACACCCAATGACCACCCCAACCGGATGAGACCTGGTTTCTACCAATTGTCGCTTGAACAGCCACC
AGGCCACCAAAATTCCCACTCACATTCCACCAACATTGACACCACTTACTGGAATACCCCTTACT
CCGTCCTCATGCGTCCTCCTTCTACCTCATTCTACCATTCTCCTCCTCCTCTGCCTCCATCCTCG
TGCGTCCTCATTCTACCTCCTTCTACTCATCTACTCCTCCTCTTCGTTCTTGCTCCTCGTTCTTC
CTCTTCTGTTCCTCCTCTTTTCCTCCTCTTTTCCTCCTCTTTTCCTCCTCTCCTCTTCCTCTCCT
CCACCTCTCCTCTCTCAACAATGGCAATTCCCGGTTATAACGGTTATCCTACATGACTACTATAG
TTAGCAACACCCGTTCCCGCGGCCCCCGACCGCTCCCACCACCAA
Right flanking sequence: Indices 4589 -- 5088
CTACGCCTACAAACCACTCCCCACCCCCATCCACCCTTCGTCTTTCCCACCTTTCGCCCGCTCTC
ACCCGCGCCTGTCAAAATTTCTTTTCCGCGTACGCGCGGCCCACGCCCATCGCATCGCTAATTTC
CACGCAGCCGGCCATCTCCCGCCCCATGTCGAAGTCGTTTGACGATTTTATAAAGCAGCAGCAGC
AGCAGGCGCAGAAGCCGCGTGGCTTCCAGTACTCGGGCCAGCTGTTCGTCCCCGGCGCCGACTAC
CTGGGCTACCAGCTGGGCCACCACGGGTACGGGTCGTACCAGTTCCAGCCCCAGGGGATGCAGAC
GCCGCTGGGCCCGTCGCTGTACGCCACCACGCCCGCGGAGTCGCGCACGGGCACCCCCGGGCCCC
AGGACCTGACCACCTCGTTGACGCTGTCGCTCAACAAGCTCAAGATCGAGGTCCCGTTCGACCAG
GAGCTCGACGCGATCATGGCCGCCAGCAAAATCGCCGAGGTCCGC
Found at i:8236 original size:15 final size:15
Alignment explanation
Indices: 8188--8238 Score: 57
Period size: 15 Copynumber: 3.4 Consensus size: 15
8178 ACTATAGAAG
* * *
8188 AAAGAGAAGAACAAA
1 AAAGACAAGACCATA
*
8203 AAAGACAAGACCGTA
1 AAAGACAAGACCATA
*
8218 AAAGACAAGACCATG
1 AAAGACAAGACCATA
8233 AAAGAC
1 AAAGAC
8239 CAGTACAGTG
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 30 1.00
ACGTcount: A:0.61, C:0.16, G:0.20, T:0.04
Consensus pattern (15 bp):
AAAGACAAGACCATA
Left flanking sequence: Indices 7688 -- 8187
CGCACTTGCTTGTGCTCGACGAGCCCACCAACTACTTGGACCGCGACTCGCTTGGCGGGTTGGCG
ATGGCGATCCGCGAGTGGACGGGCGGGGTGGTGATGATCTCGCACAACTCCGAGTTTGTGCTGGC
GTTGTGTCCCGAGCAGTGGATCGTCGACAACGGGCAGATGGTGCAGAAGGGCCACGTTGGGGTGG
CGGCGGATGCGTTCGAGGACGGCGGGTCGGCGCTGGCGCAGCCGGTCGCGAAGAAGGCGGGCGAC
GACGACTCGCCGGCCAACATCAAGGTGAAGACGAGAAAGAAGAAGATGACGCGGAACGAGAAGAA
GGCCCAGGAGGAGCGCCGGCGGTTGCGCCATATCGAGTGGTTGAGTTCGCCCAAGGGCACCCCGA
AGCCGGTGGACACCGACGACGAGGAGTAGAGGAGTAGACGAGCAGTAGGGGTATTTATGGACACC
AAAGACGAGTAAGAGGTATTTATACATTCAGGCAGACTATAGAAG
Right flanking sequence: Indices 8239 -- 8738
CAGTACAGTGTGTAGCCAGCGTAGCCAGTGTAGCCAGTGTGGCCAATGTGGCCAGTGTGCGGCCA
CTAGTGTATGGCCAGTGTGGTTACTCCAGTTTCAGGCTACCACGGTGTGAGGCTACAACATCATA
CCAGGAAATTCGCAATACTTATATAGACTTCATCTAGATACACTTGAAATAGTGATACCCATATT
GGTAGCATATACATGGTCATCGTCTTTAGCTAGAACCCTCATATCATAATTCTCTCCATCTAAAT
TGTAAAAAGTAGGTATATCCCACAGCGATTCTGGCGGTCAATCTGGAGGGTCTGTTACCGTGAAC
TTGGCCATATTCGGCCACATTTGGCAATGTGAGCCAGAGAGCTTTCACTGAATTACCAGCGTCGA
AGAGAACGCTTAGAAGAAGGCAATTGACCCGCAAATAAGCGTTGGGGGGTCTGGGGGGCGCCGCT
TGCGGCCCCCCAGCAGTCACATGGTTTAAGTCATGGTTGTGTCTA
Found at i:8297 original size:9 final size:9
Alignment explanation
Indices: 8248--8296 Score: 62
Period size: 9 Copynumber: 5.4 Consensus size: 9
8238 CCAGTACAGT
8248 GTGTAGCCA
1 GTGTAGCCA
*
8257 GCGTAGCCA
1 GTGTAGCCA
8266 GTGTAGCCA
1 GTGTAGCCA
*
8275 GTGTGGCCA
1 GTGTAGCCA
* *
8284 ATGTGGCCA
1 GTGTAGCCA
8293 GTGT
1 GTGT
8297 GCGGCCACTA
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
9 35 1.00
ACGTcount: A:0.18, C:0.22, G:0.37, T:0.22
Consensus pattern (9 bp):
GTGTAGCCA
Left flanking sequence: Indices 7748 -- 8247
TGGCGATGGCGATCCGCGAGTGGACGGGCGGGGTGGTGATGATCTCGCACAACTCCGAGTTTGTG
CTGGCGTTGTGTCCCGAGCAGTGGATCGTCGACAACGGGCAGATGGTGCAGAAGGGCCACGTTGG
GGTGGCGGCGGATGCGTTCGAGGACGGCGGGTCGGCGCTGGCGCAGCCGGTCGCGAAGAAGGCGG
GCGACGACGACTCGCCGGCCAACATCAAGGTGAAGACGAGAAAGAAGAAGATGACGCGGAACGAG
AAGAAGGCCCAGGAGGAGCGCCGGCGGTTGCGCCATATCGAGTGGTTGAGTTCGCCCAAGGGCAC
CCCGAAGCCGGTGGACACCGACGACGAGGAGTAGAGGAGTAGACGAGCAGTAGGGGTATTTATGG
ACACCAAAGACGAGTAAGAGGTATTTATACATTCAGGCAGACTATAGAAGAAAGAGAAGAACAAA
AAAGACAAGACCGTAAAAGACAAGACCATGAAAGACCAGTACAGT
Right flanking sequence: Indices 8297 -- 8796
GCGGCCACTAGTGTATGGCCAGTGTGGTTACTCCAGTTTCAGGCTACCACGGTGTGAGGCTACAA
CATCATACCAGGAAATTCGCAATACTTATATAGACTTCATCTAGATACACTTGAAATAGTGATAC
CCATATTGGTAGCATATACATGGTCATCGTCTTTAGCTAGAACCCTCATATCATAATTCTCTCCA
TCTAAATTGTAAAAAGTAGGTATATCCCACAGCGATTCTGGCGGTCAATCTGGAGGGTCTGTTAC
CGTGAACTTGGCCATATTCGGCCACATTTGGCAATGTGAGCCAGAGAGCTTTCACTGAATTACCA
GCGTCGAAGAGAACGCTTAGAAGAAGGCAATTGACCCGCAAATAAGCGTTGGGGGGTCTGGGGGG
CGCCGCTTGCGGCCCCCCAGCAGTCACATGGTTTAAGTCATGGTTGTGTCTACCATATTACATAA
ATATGACTACCACTATTTCAGATCATTTCATTAGACTAACCACTA
Found at i:13434 original size:26 final size:27
Alignment explanation
Indices: 13405--13462 Score: 82
Period size: 26 Copynumber: 2.2 Consensus size: 27
13395 ACACTACCTG
* *
13405 ACCACACACCCAAACTACCC-ACTTAA
1 ACCACACACCCAAACCACCCAACTCAA
*
13431 ACCACACACTCAAACCACCCAACTCAA
1 ACCACACACCCAAACCACCCAACTCAA
13458 ACCAC
1 ACCAC
13463 CCCACACCTT
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
26 18 0.64
27 10 0.36
ACGTcount: A:0.43, C:0.48, G:0.00, T:0.09
Consensus pattern (27 bp):
ACCACACACCCAAACCACCCAACTCAA
Left flanking sequence: Indices 12905 -- 13404
GCTTGCCTAACATATATCTCAATCAACTTTAGACCCACTATTACAATTGATTCATTTGTGGATCA
AAAGTAGAGAGTCGAATGCGTAGTCTCATCCTCTGTCACTGCTGCATGACTGTCTCGCTGGTTCA
GTGTCAATTGTTAATACTTTACTCTAATAGTGAAGAAAATGTTTACACTTCTTGCGTACATGTAT
CTCACTCAACTATTATCCACCAATGATTCAATTGTGGTAGATTTCTTGCGGTAGACGCACCTAAT
GGCTTGGCCCACTAGCCATTGGCTCAGCTGGTAGTTTTGTATCCCCTTGCTACACTTGTTATCTC
CTCGTGTTATCCCTCGTGACCTACCACTCATCGACAATCGCAGACATTCCTCGGATTATTGTCCA
CTCCACTTTTCCGGAGTCTTGCATGGCTAACCAAATTTAGTAACTTTCCAGAGATTTTACCAAAC
ACAATTGTTGCAACCAATTGGATGAAACCAGTAGCACACTACCTG
Right flanking sequence: Indices 13463 -- 13962
CCCACACCTTCCCCTACTCTCTCATGTACCTCGCCTCCACTGTCTGCTGCATTTACACCACAAGA
TCGCACAAGATCACCACAACGAAGACCACAATGCACACCGTCCCCGTTTCTTTTCTCGCCTAATC
CCACCTCCCCTCCTCGTATAACCTCGCTACCGTCCCTACACAGTGTCTGACACCTGCGCTCCTCA
GATCCACCGGCAGCAAACAGCCGTCTACAAAAACCTAACAATACCCATGTAAACTACCCACGTAA
ACTACCCACATAACCTACCCACACAATCCACCGACAACGAACCCAACCCCGCCACGAATTGCCCC
GACCCACCTCCTCCGACCGCGGCTTGGCTGTCTCCACGGTTGGTCCCGGTTCTCCATAAATGGCT
CATAACTATATGCACGATTCCAGCGACCTATAGGGTTGCCCCGGGTCTCGATATGCGGTGATCCG
CACCAATGGAACCAGCTCCAGCCTACAAAACACCACACCCCGCCG
Found at i:13457 original size:14 final size:13
Alignment explanation
Indices: 13405--13464 Score: 66
Period size: 13 Copynumber: 4.5 Consensus size: 13
13395 ACACTACCTG
* *
13405 ACCACACACCCAA
1 ACCACCCACTCAA
* *
13418 ACTACCCACTTAA
1 ACCACCCACTCAA
*
13431 ACCACACACTCAA
1 ACCACCCACTCAA
13444 ACCACCCAACTCAA
1 ACCACCC-ACTCAA
13458 ACCACCC
1 ACCACCC
13465 CACACCTTCC
Statistics
Matches: 38, Mismatches: 8, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
13 25 0.66
14 13 0.34
ACGTcount: A:0.42, C:0.50, G:0.00, T:0.08
Consensus pattern (13 bp):
ACCACCCACTCAA
Left flanking sequence: Indices 12905 -- 13404
GCTTGCCTAACATATATCTCAATCAACTTTAGACCCACTATTACAATTGATTCATTTGTGGATCA
AAAGTAGAGAGTCGAATGCGTAGTCTCATCCTCTGTCACTGCTGCATGACTGTCTCGCTGGTTCA
GTGTCAATTGTTAATACTTTACTCTAATAGTGAAGAAAATGTTTACACTTCTTGCGTACATGTAT
CTCACTCAACTATTATCCACCAATGATTCAATTGTGGTAGATTTCTTGCGGTAGACGCACCTAAT
GGCTTGGCCCACTAGCCATTGGCTCAGCTGGTAGTTTTGTATCCCCTTGCTACACTTGTTATCTC
CTCGTGTTATCCCTCGTGACCTACCACTCATCGACAATCGCAGACATTCCTCGGATTATTGTCCA
CTCCACTTTTCCGGAGTCTTGCATGGCTAACCAAATTTAGTAACTTTCCAGAGATTTTACCAAAC
ACAATTGTTGCAACCAATTGGATGAAACCAGTAGCACACTACCTG
Right flanking sequence: Indices 13465 -- 13964
CACACCTTCCCCTACTCTCTCATGTACCTCGCCTCCACTGTCTGCTGCATTTACACCACAAGATC
GCACAAGATCACCACAACGAAGACCACAATGCACACCGTCCCCGTTTCTTTTCTCGCCTAATCCC
ACCTCCCCTCCTCGTATAACCTCGCTACCGTCCCTACACAGTGTCTGACACCTGCGCTCCTCAGA
TCCACCGGCAGCAAACAGCCGTCTACAAAAACCTAACAATACCCATGTAAACTACCCACGTAAAC
TACCCACATAACCTACCCACACAATCCACCGACAACGAACCCAACCCCGCCACGAATTGCCCCGA
CCCACCTCCTCCGACCGCGGCTTGGCTGTCTCCACGGTTGGTCCCGGTTCTCCATAAATGGCTCA
TAACTATATGCACGATTCCAGCGACCTATAGGGTTGCCCCGGGTCTCGATATGCGGTGATCCGCA
CCAATGGAACCAGCTCCAGCCTACAAAACACCACACCCCGCCGTA
Found at i:13717 original size:13 final size:13
Alignment explanation
Indices: 13699--13744 Score: 65
Period size: 13 Copynumber: 3.5 Consensus size: 13
13689 AACCTAACAA
*
13699 TACCCATGTAAAC
1 TACCCACGTAAAC
13712 TACCCACGTAAAC
1 TACCCACGTAAAC
* *
13725 TACCCACATAACC
1 TACCCACGTAAAC
13738 TACCCAC
1 TACCCAC
13745 ACAATCCACC
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
13 30 1.00
ACGTcount: A:0.37, C:0.41, G:0.04, T:0.17
Consensus pattern (13 bp):
TACCCACGTAAAC
Left flanking sequence: Indices 13199 -- 13698
TTTTGTATCCCCTTGCTACACTTGTTATCTCCTCGTGTTATCCCTCGTGACCTACCACTCATCGA
CAATCGCAGACATTCCTCGGATTATTGTCCACTCCACTTTTCCGGAGTCTTGCATGGCTAACCAA
ATTTAGTAACTTTCCAGAGATTTTACCAAACACAATTGTTGCAACCAATTGGATGAAACCAGTAG
CACACTACCTGACCACACACCCAAACTACCCACTTAAACCACACACTCAAACCACCCAACTCAAA
CCACCCCACACCTTCCCCTACTCTCTCATGTACCTCGCCTCCACTGTCTGCTGCATTTACACCAC
AAGATCGCACAAGATCACCACAACGAAGACCACAATGCACACCGTCCCCGTTTCTTTTCTCGCCT
AATCCCACCTCCCCTCCTCGTATAACCTCGCTACCGTCCCTACACAGTGTCTGACACCTGCGCTC
CTCAGATCCACCGGCAGCAAACAGCCGTCTACAAAAACCTAACAA
Right flanking sequence: Indices 13745 -- 14244
ACAATCCACCGACAACGAACCCAACCCCGCCACGAATTGCCCCGACCCACCTCCTCCGACCGCGG
CTTGGCTGTCTCCACGGTTGGTCCCGGTTCTCCATAAATGGCTCATAACTATATGCACGATTCCA
GCGACCTATAGGGTTGCCCCGGGTCTCGATATGCGGTGATCCGCACCAATGGAACCAGCTCCAGC
CTACAAAACACCACACCCCGCCGTAGCCAACCCCACATCCCCTCCACCCGCTCCACCGCCACCCC
GTCCCCCGTGCCATCTCTCGCAACACCCGTGCAGCACAAAAAACCGTTCGCTCGGACGTGCTCGC
TCTCGGCCAATCAAATGTGGAGTTTTTTCTGAGCGAGCGCTAGGCGCGCTCTCTTTTATAAATCG
GAGGACCGCCCAGTATAATTTTTTTTCACCACTACACTTGAAACAAACATGGTTTTGCCTAGAAT
GTTTACTGGTGCTTCGCGCAATGCCTTCGTGGCTGCCAAGCGCTC
Found at i:21661 original size:8 final size:8
Alignment explanation
Indices: 21650--21689 Score: 80
Period size: 8 Copynumber: 5.0 Consensus size: 8
21640 GCCACTCACT
21650 CTACCCAC
1 CTACCCAC
21658 CTACCCAC
1 CTACCCAC
21666 CTACCCAC
1 CTACCCAC
21674 CTACCCAC
1 CTACCCAC
21682 CTACCCAC
1 CTACCCAC
21690 TCACCACCCA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 32 1.00
ACGTcount: A:0.25, C:0.62, G:0.00, T:0.12
Consensus pattern (8 bp):
CTACCCAC
Left flanking sequence: Indices 21150 -- 21649
TGTGTAATTTGGGTTTGCGTTAAGTTCGTTCTTATTCCAATTGAGAATAGATTCAGAGGCAATTG
GTTGATCAAGATGGTGGAAGTATACTAACTGGGATATCTAGCGGAACCACTCCATCAGTCCAATG
GCACTGAGAACATGTACTACAACCAACTAAAATTTCACCCGAATTCTCCACAACACTTTTCGCCT
ACCCTTCTATGTCAGCCGTGCCGAGCTCGGAATCGCCTTACGAGAACTAGCGAGGACTATATGCA
GGCAAATCAATATCAGGGAAACAAGGCCCCAACGTACGCCCCTAAACGCGGTCCCGCTGGGCTGA
AAACACCACAGGAGTACTCTAGGTGCCCGAAATAGCCCACAACACCCCCCTTTCCACCATTTGCC
CGCGGCTTCCCACAGTTTCCCCACTCCCCGGTCACATGCCTAGCTCACCACCAAGCCACCAAACA
CCAAAACCACCGCAAACCACCCATTGAGCCACCCAGCCACTCACT
Right flanking sequence: Indices 21690 -- 22189
TCACCACCCACTACACTCTACACTAGTCTTTTCTTCCTAGTTTCTCTTCCTAGTCTTTCTTCATA
TATCTAAATAATGTGCTTCACCTTGAAGTAGTGTCTCAAGTACTGGATCTGCCACACACCAAGCC
CCACCAACGCCATGATAATGAAAATAGAAAACCACTTCACCCGCAGGTTCGTCAGCTCGTTGGTG
TCACGCATCCGCTCCTCACGCAACTTCAAGTAGTGCATCTGGTTCTGGATCTCGCCCAACATCGC
CAGCAGCTTCAAGAGCTCCACCTCGTTGGGCTTCAACTTCTCCGCCGCCTGCTGCGCGTTCCAGT
CGCGCGCAGCCGCGCCCAGCTCAATGTCCAACTCGATCTCCTTGACCCCGGTCCCGTGGCCCAGG
TAGGAGTTGGTGAAGCACACGTCGAACGCGGCAGCGTCGTGCGAGGTGAACGCCACCTTGACGGT
GCCGCCGATGTCGTGCTTGCGCGAAAACTCGTTGCCAAGGGTGTC
Found at i:21750 original size:13 final size:13
Alignment explanation
Indices: 21712--21751 Score: 55
Period size: 13 Copynumber: 3.0 Consensus size: 13
21702 ACACTCTACA
21712 CTAGTCTTTTCTTC
1 CTAGTC-TTTCTTC
21726 CTAGT-TTCTCTTC
1 CTAGTCTT-TCTTC
21739 CTAGTCTTTCTTC
1 CTAGTCTTTCTTC
21752 ATATATCTAA
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
12 2 0.08
13 15 0.62
14 7 0.29
ACGTcount: A:0.07, C:0.30, G:0.07, T:0.55
Consensus pattern (13 bp):
CTAGTCTTTCTTC
Left flanking sequence: Indices 21212 -- 21711
TTGGTTGATCAAGATGGTGGAAGTATACTAACTGGGATATCTAGCGGAACCACTCCATCAGTCCA
ATGGCACTGAGAACATGTACTACAACCAACTAAAATTTCACCCGAATTCTCCACAACACTTTTCG
CCTACCCTTCTATGTCAGCCGTGCCGAGCTCGGAATCGCCTTACGAGAACTAGCGAGGACTATAT
GCAGGCAAATCAATATCAGGGAAACAAGGCCCCAACGTACGCCCCTAAACGCGGTCCCGCTGGGC
TGAAAACACCACAGGAGTACTCTAGGTGCCCGAAATAGCCCACAACACCCCCCTTTCCACCATTT
GCCCGCGGCTTCCCACAGTTTCCCCACTCCCCGGTCACATGCCTAGCTCACCACCAAGCCACCAA
ACACCAAAACCACCGCAAACCACCCATTGAGCCACCCAGCCACTCACTCTACCCACCTACCCACC
TACCCACCTACCCACCTACCCACTCACCACCCACTACACTCTACA
Right flanking sequence: Indices 21752 -- 22251
ATATATCTAAATAATGTGCTTCACCTTGAAGTAGTGTCTCAAGTACTGGATCTGCCACACACCAA
GCCCCACCAACGCCATGATAATGAAAATAGAAAACCACTTCACCCGCAGGTTCGTCAGCTCGTTG
GTGTCACGCATCCGCTCCTCACGCAACTTCAAGTAGTGCATCTGGTTCTGGATCTCGCCCAACAT
CGCCAGCAGCTTCAAGAGCTCCACCTCGTTGGGCTTCAACTTCTCCGCCGCCTGCTGCGCGTTCC
AGTCGCGCGCAGCCGCGCCCAGCTCAATGTCCAACTCGATCTCCTTGACCCCGGTCCCGTGGCCC
AGGTAGGAGTTGGTGAAGCACACGTCGAACGCGGCAGCGTCGTGCGAGGTGAACGCCACCTTGAC
GGTGCCGCCGATGTCGTGCTTGCGCGAAAACTCGTTGCCAAGGGTGTCGGTGATCTTCAAGTCCA
ACTTTTGCCCGTCGCCCTTGCGGCCCAGGATCTTCATGTTGACGG
Found at i:22954 original size:18 final size:18
Alignment explanation
Indices: 22891--22957 Score: 84
Period size: 18 Copynumber: 3.8 Consensus size: 18
22881 AGCGAATGAA
22891 GAGAAGAGATGGG-ACCG
1 GAGAAGAGATGGGAACCG
* *
22908 GTG-AGAGATGGGGACCG
1 GAGAAGAGATGGGAACCG
*
22925 GAGTAGAGATGGGAACCG
1 GAGAAGAGATGGGAACCG
*
22943 GAGAAGAAATGGGAA
1 GAGAAGAGATGGGAA
22958 GGAGCCGGGG
Statistics
Matches: 43, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
16 9 0.21
17 8 0.19
18 26 0.60
ACGTcount: A:0.36, C:0.09, G:0.46, T:0.09
Consensus pattern (18 bp):
GAGAAGAGATGGGAACCG
Left flanking sequence: Indices 22391 -- 22890
TGTGTTGGCAATTGTCGCGGTGAAAAAAACGCGTCGGTGCGCGGTGGGCGGGGTGGGGCGACGAA
CACGGGCGCCACACGCGGAGTCGGGGTGAAAAAAGCGGCTACGGGGGGTAATACGGGGCCGCTGG
ACACGGTGGCGGCGTTGTTTCGGGCGATTTCCCGGGTTTTGATTTTGGTGGTCACCTTACATAAG
CGCGATCGAAATTTTTCATCTCCATCACCACCACCATGGCCAAACCGAAGGGGACCCACACCATG
ATCAAGCTTGTGCTGGCGGCCAAGACCGGGTACGAGAAGTGGTTCAACATCCCCAGATCGCACCA
GAAACTCAACTTGATCCTCTACGACCCGCGGGCGAGACGCCACTGTCTTTTCACTGAGGACCGCA
AGAGAAAGGTGGCGGAGCAGTTGCCCAAGGACTACTCGCGCTCTCATAGAGGGTAGCCCGCTTGT
ATATAGGTAATGAACATAATGAGATAACCGGGATGAGCGAATGAA
Right flanking sequence: Indices 22958 -- 23457
GGAGCCGGGGACCGGTTCGGGGTTATCGATGACAACCAGGGCTCAGATCCGGTTGGGACGGACGC
TGGGTTGAGGCGGTTGATGATGTGACTGCCTGGGTTTAGTTGGTATGAGCCCAGGTGAGCCCAGG
GGAGCCCAGTGACTGGGCAGCCTGGCTCAGTACGCGGTTGGTGGAAAGGTCGGTTTATTGGGCTG
GGCGGGATCCGTTAGGGAAGACGTTACGAGGTCTCAGGTGGTACCTATGTGAGGACTAAGCTGAC
CAAAGCTGTGTGTGAACCCAAGATGTATCAAGACAGATTTGATTCTGAATCCGGTCAGGAAAATT
CGGTGACAAACAGAAGCTACCATCACCAACACCACCACTACCACCACCACCACATTAAACCACAC
CCTTTAACACCCCCTCTCTTCCACGTGCTATCGCTCGACCCGACTCTTTGTGTAACTTCAACCGA
GAATGCCCCTGACCCCTTAACGGGGCTTTGGCTCGTAGAACACCA
Found at i:24555 original size:13 final size:13
Alignment explanation
Indices: 24526--24609 Score: 89
Period size: 13 Copynumber: 6.5 Consensus size: 13
24516 GTCTACAGTC
*
24526 AACCAGACCCT-TA
1 AACCAGA-CCTGTT
24539 AACCAGACCTGTT
1 AACCAGACCTGTT
*
24552 AACCCGACCTGTT
1 AACCAGACCTGTT
*
24565 AACCCGACCTGTT
1 AACCAGACCTGTT
* * *
24578 AACCAAACCTATA
1 AACCAGACCTGTT
*
24591 AACCAGACTTGTT
1 AACCAGACCTGTT
24604 AACCAG
1 AACCAG
24610 TCTATCTCCT
Statistics
Matches: 60, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
12 3 0.05
13 57 0.95
ACGTcount: A:0.35, C:0.33, G:0.12, T:0.20
Consensus pattern (13 bp):
AACCAGACCTGTT
Left flanking sequence: Indices 24026 -- 24525
GGGCTACCTCCGGATGGTGGCCTCGCGGGTACACGACCGGGTCAAGAAGCACTACCCGTCGTTCG
TGATCCCCCGGGGGACCACCGCAGCCCGGTACGTCGACAACGCCATCTACGCGTGCCACAACCTG
GAGCTCCTCTTTGACGACTACGACAAACAGCTCAGGTGCCACCCGCTCACCTCGAGGCTGCTCAA
CAACCGCAAGCAGGTGACGCGGCTAGCGGGCATTGTCGAGGCGCTCGTGGACGACGTCCAGTTTC
TTTCCGTTGACCACCTTGAGCTCCTCAAGCGGGCGCTTCTTCGCTACGACGGAGAGCTCCCGTTT
GAGGTCACCAACTGCTTTATCGGGTCGGTGGTGCGGAACCTGCCCTACCCGGTGGAGATTGTGCG
GGAAGAGGTTAAGCAGACACTTGTGGAGTTTGTCGCCCGGCTTCTCCGCCACCGAGACAACCGGG
TAGCAAAGCAGTGTGTGCTCGTGTACAAGTAGGAAGTCTACAGTC
Right flanking sequence: Indices 24610 -- 25109
TCTATCTCCTTCAAATCTGGAAGCTCATTTATCTACTAGTCCAATCACCAGCCAATTTGTCAACC
AGTCAACTAGACAATGAAAACCAGACTATTAGACAACCCGTTCGACCTTTTTGTTAAGCTGTCAA
CGGGTGTATTCTGTCCTGCTAACCTATCAAAAATGTTCCCCACCGTGGGTATCTGTGTTCTCCAA
CTTGGCAGTTCCTTCTCCAAACGGTCTGTTAGTCCGTCCACCTTCCCTACCACCCCCACCCAATA
CTCCCCTTTTGGTTCATAGATCATAATATATACATTAAACTCTCTCGGCCGACCAGATGGCCCCC
CGACACACCAACTTGATCGCCTCGGTAAGCAACATGTACGGCACCGCCTTCTCAGCGTCGTGCTC
GATCGCGGTGTCCAAGTGCTCCAACTCGTCGTCACGGAACTCCTTCACCGTCTGTTTCAACTCGA
GAATCTCCGGCAGCACCAACGCCAGGCGGTCAACCTCGCTCGGGT
Found at i:30282 original size:15 final size:14
Alignment explanation
Indices: 30258--30316 Score: 82
Period size: 15 Copynumber: 4.0 Consensus size: 14
30248 TCAACGGTGG
30258 ACCCACCCCCTTTAC
1 ACCCA-CCCCTTTAC
30273 ACCCATCCCCTTTAC
1 ACCCA-CCCCTTTAC
30288 ACCCACCACCTTTAC
1 ACCCACC-CCTTTAC
*
30303 GCCCACCCCTTTAC
1 ACCCACCCCTTTAC
30317 TGGTTTCTTT
Statistics
Matches: 41, Mismatches: 2, Indels: 3
0.89 0.04 0.07
Matches are distributed among these distances:
14 9 0.22
15 32 0.78
ACGTcount: A:0.20, C:0.56, G:0.02, T:0.22
Consensus pattern (14 bp):
ACCCACCCCTTTAC
Left flanking sequence: Indices 29758 -- 30257
TGCTCATGCATCCACGTTTCGAACTTAGTGATACATTAGAAGCTAGGATTTGTGTCCACATATTT
CCGTAAGCATGCATAAGCATAAGCCTTGGCAGTGCACCACCATATTCTCCGTACGTTGGGTTGCA
AATGTCACATACGTGGACCCTTTGTGACTGTTTCAACCGTGATGTAGTCACAAAAACGATTAGTG
CCCTTTTCTCCGGGTGCGTCTACGCTTAAGCCAAGATTTGACGGGCTTCTCTGCATATCGCAACT
CGAATTTGTCATAATTTACGCGGCTTACATATGGGGAGTGCGGACTTTGTTTGCGGTCAGGGGCT
ACATCCGAGATAATTAGGGTTCAATTGCCTACCTATAGACCCTGTAAACATCAATGCAGTAACCC
CAGAGGTAGTCAAGACCTACAAGTCAAACCACGACTGAGTATGCCATCTTGTGACCTACGCGAGA
GCGGTCTACCTTGAAGCTGCGATTACTTTAGTATTTCAACGGTGG
Right flanking sequence: Indices 30317 -- 30816
TGGTTTCTTTATTATGCTATGCTAGAATCGTTGCAACATCTCCACCGCGGCCTCGTAGGCCACTT
TCGTGCCATCGCGAGCCTTGGTCACCGGGCGGTTGTGGTGCAACGGGTTCTTCACCTTCTCCATC
CACATGTGGCTCACCTCCAGCACCAGGTGCCATTTGATGTTGAACATGCCCGGGAACTGGGGGCT
GAACGCAGGAATCTGGCGCTTTGGGTCCACCGGGGACACCATCTCTGCCACCCCGCAAAACATGT
TCTAGAGAGCGAAAAACAAGAACACCCGCACGCCCAGGGCCTTGGCATCGGTGTAGGCCGTTTGG
AGCTCGCGGTTGGCAGCGCCGGTCAGCGTCCAGCACTGATTGTCCCGCGCGTACGCGACGAGGTC
CTCCGAGGTGGCCCGCACCACGTAGAACCGGTCGGTGGCCGAAACAACCACCATCCCGTCGCTTT
CCAGCATGAAGGTGTGCTTTTGGGGCGTTTCGGAGGCCTGCTCCG
Found at i:30292 original size:30 final size:29
Alignment explanation
Indices: 30258--30316 Score: 91
Period size: 30 Copynumber: 2.0 Consensus size: 29
30248 TCAACGGTGG
*
30258 ACCCACCCCCTTTACACCCATCCCCTTTAC
1 ACCCACCACCTTTACACCCA-CCCCTTTAC
*
30288 ACCCACCACCTTTACGCCCACCCCTTTAC
1 ACCCACCACCTTTACACCCACCCCTTTAC
30317 TGGTTTCTTT
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
29 9 0.33
30 18 0.67
ACGTcount: A:0.20, C:0.56, G:0.02, T:0.22
Consensus pattern (29 bp):
ACCCACCACCTTTACACCCACCCCTTTAC
Left flanking sequence: Indices 29758 -- 30257
TGCTCATGCATCCACGTTTCGAACTTAGTGATACATTAGAAGCTAGGATTTGTGTCCACATATTT
CCGTAAGCATGCATAAGCATAAGCCTTGGCAGTGCACCACCATATTCTCCGTACGTTGGGTTGCA
AATGTCACATACGTGGACCCTTTGTGACTGTTTCAACCGTGATGTAGTCACAAAAACGATTAGTG
CCCTTTTCTCCGGGTGCGTCTACGCTTAAGCCAAGATTTGACGGGCTTCTCTGCATATCGCAACT
CGAATTTGTCATAATTTACGCGGCTTACATATGGGGAGTGCGGACTTTGTTTGCGGTCAGGGGCT
ACATCCGAGATAATTAGGGTTCAATTGCCTACCTATAGACCCTGTAAACATCAATGCAGTAACCC
CAGAGGTAGTCAAGACCTACAAGTCAAACCACGACTGAGTATGCCATCTTGTGACCTACGCGAGA
GCGGTCTACCTTGAAGCTGCGATTACTTTAGTATTTCAACGGTGG
Right flanking sequence: Indices 30317 -- 30816
TGGTTTCTTTATTATGCTATGCTAGAATCGTTGCAACATCTCCACCGCGGCCTCGTAGGCCACTT
TCGTGCCATCGCGAGCCTTGGTCACCGGGCGGTTGTGGTGCAACGGGTTCTTCACCTTCTCCATC
CACATGTGGCTCACCTCCAGCACCAGGTGCCATTTGATGTTGAACATGCCCGGGAACTGGGGGCT
GAACGCAGGAATCTGGCGCTTTGGGTCCACCGGGGACACCATCTCTGCCACCCCGCAAAACATGT
TCTAGAGAGCGAAAAACAAGAACACCCGCACGCCCAGGGCCTTGGCATCGGTGTAGGCCGTTTGG
AGCTCGCGGTTGGCAGCGCCGGTCAGCGTCCAGCACTGATTGTCCCGCGCGTACGCGACGAGGTC
CTCCGAGGTGGCCCGCACCACGTAGAACCGGTCGGTGGCCGAAACAACCACCATCCCGTCGCTTT
CCAGCATGAAGGTGTGCTTTTGGGGCGTTTCGGAGGCCTGCTCCG
Found at i:30862 original size:9 final size:9
Alignment explanation
Indices: 30850--30876 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
30840 GGCTCCACTT
30850 CGTCCAGCA
1 CGTCCAGCA
30859 CGTCCAGCA
1 CGTCCAGCA
30868 CGTCCAGCA
1 CGTCCAGCA
30877 GCCACGCGGG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.22, C:0.44, G:0.22, T:0.11
Consensus pattern (9 bp):
CGTCCAGCA
Left flanking sequence: Indices 30350 -- 30849
CAACATCTCCACCGCGGCCTCGTAGGCCACTTTCGTGCCATCGCGAGCCTTGGTCACCGGGCGGT
TGTGGTGCAACGGGTTCTTCACCTTCTCCATCCACATGTGGCTCACCTCCAGCACCAGGTGCCAT
TTGATGTTGAACATGCCCGGGAACTGGGGGCTGAACGCAGGAATCTGGCGCTTTGGGTCCACCGG
GGACACCATCTCTGCCACCCCGCAAAACATGTTCTAGAGAGCGAAAAACAAGAACACCCGCACGC
CCAGGGCCTTGGCATCGGTGTAGGCCGTTTGGAGCTCGCGGTTGGCAGCGCCGGTCAGCGTCCAG
CACTGATTGTCCCGCGCGTACGCGACGAGGTCCTCCGAGGTGGCCCGCACCACGTAGAACCGGTC
GGTGGCCGAAACAACCACCATCCCGTCGCTTTCCAGCATGAAGGTGTGCTTTTGGGGCGTTTCGG
AGGCCTGCTCCGCGGCAAAATCGAGCTGCCAGTCGGGCTCCACTT
Right flanking sequence: Indices 30877 -- 31376
GCCACGCGGGCGCCTCGGGAAACCCTCCAGCGGCGTCCGACACCTGGTGGTAGTGCAAATTGGTG
TTGTGGTACTGGCGCTGGTAGCCCAAAATGCGGTCGATGTCGACAAACCGCAATGGGTTCAGCTG
GGAGTCCCGCGGCAGCACCGTGGTGGGCAGCACCAGCTCCTCCACCTCAAACTGGGGACACACCG
GCGGAAACGTCGCCAAACTGCAGTTGGCGTACGCCTTGTTCCATCGCACCTCCAGGGCGACAATG
TGGTCCAAGCGCCGCGCCAACTTGGCGTCGTCTACAGGCAGTTTACGGGTGGTGAGCGTGGTCTC
GGTGGCAGCGCCCAAGGTGGGGGCGCTCCCGGTGACGTCATCGGTGTCCCCCAGTGCCTGGCGGC
CAGGGTGGAGCGCCAACTCGTCGGGGGTCAAGTTGTCAAAGCCAATCAGCCGCAAGCTCATGCGA
AGCGTCAGCACCGTGCTCTCGTGGAAGTGGGCCAGGTCGGCCAGC
Found at i:31992 original size:12 final size:12
Alignment explanation
Indices: 31975--31999 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
31965 TTGCTATATT
31975 TAAGCTATATAG
1 TAAGCTATATAG
31987 TAAGCTATATAG
1 TAAGCTATATAG
31999 T
1 T
32000 CGATCGTGAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.08, G:0.16, T:0.36
Consensus pattern (12 bp):
TAAGCTATATAG
Left flanking sequence: Indices 31475 -- 31974
GAGCGACACCATTATATAGGTAAAAAAAGGGTGGACAACCAGCAGGTCCAAGGGTTTTTATAGTG
TGTTCGACTACGCGGGTGACGACCGCACTCGTTTACGTAAAAAATAATGGCCACAGCGGGGTGAA
ACGACGACAACAGGAAAATATCGTGTGGGGAGAGTGGTGGGGTGGTGGTGGGGATGGCGTGGTGG
CTGGGTGTAGATGGTGGCCAGTGGGTGGGTGGTGAGTGGTAGGTTGGAGGGTGGTAAAAAGTAAC
GGGACACTCGCGGCTTTGCTTATGCCTCGTCTCGCTTGCACCCTGCCTTTTAGGGCGATCATTCC
GGTATAATTAGATGGAGGTCAGATCGAGACGTGCATAATCACAAACACCGGACGAAACAATAGTG
TCGGATGACGCGGGCGGGTGGACACAAGGGTTCAGTAGGGTGTGGAGGGAGGTGACAATACGGTT
TGTTGGTCGGAAAAGGTTTGGAGGTGACCCCTTGTTTGCTATATT
Right flanking sequence: Indices 32000 -- 32499
CGATCGTGACGAGTCAGGTGGGTGGGGTGCATAAGTGCGGGACGATTGTATGCCGAGGTGGAAAG
CAGTGTAGAGCTGAAACGAGGTATTGGGTAGTGTGGAGAAATCGCTTCAGTAAGGTTTTGTTTAC
GACCCATTCATTCGGTCCCGGTTCGGTCTAGAATTAACATGGTTACCTGAGGGGTTCGGGGAAGC
GGAAGCGGCTGAATTAGGGACGTTTGGGAATGTGGTATGGAGCCATGAAGGCGCTTACGAAGGCA
CTTATGAGACGCTATGAGATGCTTATGAGACGTTCACGAAGGGGCTCCACATAATCTAGTGAGCT
CGACTAGATCACCTCAGCTAAGCTATGTTTGGACAAACAGACGCGTGCCGGGCTGCTGCCGTGAG
GACCCCAGAAAATAACCGGGTTCGCGACAGGTGGGTGCATGGAACCAGCTGGGCAGGCTAGACCG
CGGTCCAGTGTAGTGCGTTCCCAATCGGGAAACTGCTCAGTGTGT
Found at i:33616 original size:15 final size:16
Alignment explanation
Indices: 33596--33625 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
33586 TTTCCTCCCT
33596 CTCCTCCTCT-TCGTC
1 CTCCTCCTCTCTCGTC
33611 CTCCTCCTCTCTCGT
1 CTCCTCCTCTCTCGT
33626 GTCCGGTCGT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 10 0.71
16 4 0.29
ACGTcount: A:0.00, C:0.53, G:0.07, T:0.40
Consensus pattern (16 bp):
CTCCTCCTCTCTCGTC
Left flanking sequence: Indices 33096 -- 33595
TCTGTTCCCCGCAATGTCGTAAGGTCCTACATTTAATTACACGCGTCACCAACCACGCGACAGAC
GATTTCGGACGAAACCGTGCTAGGCACCAGAGACTGCGATGACCCTGGTCATCTGAAACCGGTGT
CGGCACCAGTGGCTAATAGTCGGTGAGATAGTCCTGTGGGTGGCCACAGACGCGTAGACGAAGGG
GACACTGACACGTACTCTGACTCTAAGAGGACCTAGTGAAACGGAGTCTAGACATTTTTAAGGAC
CGTCGTACAAAAAACCCCTTGAATAATTAAGCCAATTAAGCCTCTACATACTGCTCGTCAACAAT
CGCTAGTCATATCTCTTTCCCTTGGTCTCTTTTTCCGGCTCGTCTATGAAACGACCACGTACGGG
TTAGTCTGGACGCGTAGCTCACCCCTACCGGGCCTCGAATCCCGCTCAACAACTATAAATACTCC
ACATTCCCTCTTATTTTCCACCGTCGTCCTTCTTTTTTCCTCCCT
Right flanking sequence: Indices 33626 -- 34125
GTCCGGTCGTGCCGCTACCAGCCATTATCGCACAACTCAAGACGCTCGACCAACAACCCCTCCAA
ACATGTCCGAGAACCAGCCCGCGGACGCGGACGCGGCGGCTAACAACCGCATCGGCAAGTACGTG
GTGCTCAAAACGCTTGGCGAGGGCTCCTTTGGCAAGGTCAAGTTGGCCCAGCACCTGGTGACGGG
CCAGCGCGTCGCCCTCAAAATCATCAACCGCAAAACGCTTGCGAAGCTGGACATGCAAGGCCGCA
TCGAGCGGGAGATCTCGTACCTCCGGCTCTTGCGCCACCCGCACATTATCAAGCTCTACGACGTC
ATCAAGTCGAAAGACGAGATCATCATGGTGATTGAGTACGCGGGCAAGGAGTTGTTTGACTACAT
TGTCCAGCGCGGGCGGATGCCCGAGAACGAGGCACGCAGGTTTTTCCAGCAGATCGTGGCTGCCG
TTGAGTACTGCCACCGCCACAAAATTGTCCACCGAGACCTCAAGC
Found at i:39900 original size:16 final size:16
Alignment explanation
Indices: 39879--39926 Score: 87
Period size: 16 Copynumber: 3.0 Consensus size: 16
39869 CTCCAAGACT
*
39879 AACATTCGTAAGGTCA
1 AACATTCATAAGGTCA
39895 AACATTCATAAGGTCA
1 AACATTCATAAGGTCA
39911 AACATTCATAAGGTCA
1 AACATTCATAAGGTCA
39927 TTCATAAGGT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
16 31 1.00
ACGTcount: A:0.42, C:0.19, G:0.15, T:0.25
Consensus pattern (16 bp):
AACATTCATAAGGTCA
Left flanking sequence: Indices 39379 -- 39878
GGTTACTTTGTTGGTGGTTGGGATGGTTGGCCAGTAGCTTTCAATTTGTTTGTAAATACACAGCG
CTAACTACAAAAGACGACTCATTCAATTGACCTCCGTCGTCTAATTGCAAGGGGTTGGTTTCATC
TTCTGTACCCCTTGTGCGTCTTATTGCATGGCGGGAAAGGTATTGTGTTGTTTCCTGGCCCACGA
GTAGGAGAAAGGGGTGTTTAAAGTAACAAAGTGGACCCAAGAGCAGTTTGTTGTGAGTAGTCTCG
TTGGTAGGCAAGAAGTGGCCAAACTCATTCCGTACCGCTGTATTTCAAAACTCGTGAAAACCTCA
TACTTTTTAACAATTTGCACGAATTTTTACAAAAACATTACCCATTTCTTGATCTCTTGTGGGCA
TTATAACACAACTTCGAACTGACTACATGGACGTATTGGAACACCACTCACCTCTTGGATCATAT
TAACTCTTTAAACTTCACACAAAGTCCCTCTACTTCTCCAAGACT
Right flanking sequence: Indices 39927 -- 40426
TTCATAAGGTCATAACTACCATACACACACTAAACCACCTCCGTAGAACCTCTCAGCGATTGTAC
ATCTTCTCCATCTCATCCGCCCCACAGTTCGCCAACCTGTCGGCCGCCGCATTCCCCTTGTTCCC
CAGGTGGGCCTTCACCTTCGACACCACCAACTGCCAGCGCTTCGACAGCATGTACTCGTTACACC
GGTCCACCATCCGTAGCACTTGCTCAATCAAATCGCGGTTGGCCACCGGCTCGCCCTCGGCGGTC
ACCCACCCGTTCTTCTGCCACTGGTACCGCCAGGCGTTGACACACTGCACCACGTAGTTCAGGTC
GGTGTGCACGGTCACTGGCCCGCGGTGCACCCCGTCGACAATGTCGCCCAACACGTCGTACAACG
CCTCCCGGAGCGCACAGAGCTCGGCCCGTTGGTTGGTGGGCGGGTTGCGGTCGCAGTCGTCAACC
TTACAGAGGGCGGCTGCGAAGTTCCGCGGGTGGTCGGGGCCGTAG
Found at i:39930 original size:12 final size:12
Alignment explanation
Indices: 39913--39939 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
39903 TAAGGTCAAA
39913 CATTCATAAGGT
1 CATTCATAAGGT
39925 CATTCATAAGGT
1 CATTCATAAGGT
39937 CAT
1 CAT
39940 AACTACCATA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.33, C:0.19, G:0.15, T:0.33
Consensus pattern (12 bp):
CATTCATAAGGT
Left flanking sequence: Indices 39413 -- 39912
TAGCTTTCAATTTGTTTGTAAATACACAGCGCTAACTACAAAAGACGACTCATTCAATTGACCTC
CGTCGTCTAATTGCAAGGGGTTGGTTTCATCTTCTGTACCCCTTGTGCGTCTTATTGCATGGCGG
GAAAGGTATTGTGTTGTTTCCTGGCCCACGAGTAGGAGAAAGGGGTGTTTAAAGTAACAAAGTGG
ACCCAAGAGCAGTTTGTTGTGAGTAGTCTCGTTGGTAGGCAAGAAGTGGCCAAACTCATTCCGTA
CCGCTGTATTTCAAAACTCGTGAAAACCTCATACTTTTTAACAATTTGCACGAATTTTTACAAAA
ACATTACCCATTTCTTGATCTCTTGTGGGCATTATAACACAACTTCGAACTGACTACATGGACGT
ATTGGAACACCACTCACCTCTTGGATCATATTAACTCTTTAAACTTCACACAAAGTCCCTCTACT
TCTCCAAGACTAACATTCGTAAGGTCAAACATTCATAAGGTCAAA
Right flanking sequence: Indices 39940 -- 40439
AACTACCATACACACACTAAACCACCTCCGTAGAACCTCTCAGCGATTGTACATCTTCTCCATCT
CATCCGCCCCACAGTTCGCCAACCTGTCGGCCGCCGCATTCCCCTTGTTCCCCAGGTGGGCCTTC
ACCTTCGACACCACCAACTGCCAGCGCTTCGACAGCATGTACTCGTTACACCGGTCCACCATCCG
TAGCACTTGCTCAATCAAATCGCGGTTGGCCACCGGCTCGCCCTCGGCGGTCACCCACCCGTTCT
TCTGCCACTGGTACCGCCAGGCGTTGACACACTGCACCACGTAGTTCAGGTCGGTGTGCACGGTC
ACTGGCCCGCGGTGCACCCCGTCGACAATGTCGCCCAACACGTCGTACAACGCCTCCCGGAGCGC
ACAGAGCTCGGCCCGTTGGTTGGTGGGCGGGTTGCGGTCGCAGTCGTCAACCTTACAGAGGGCGG
CTGCGAAGTTCCGCGGGTGGTCGGGGCCGTAGTACACCCCGATCC
Found at i:42414 original size:29 final size:29
Alignment explanation
Indices: 42396--42470 Score: 123
Period size: 29 Copynumber: 2.6 Consensus size: 29
42386 GAGAGTGGAG
42396 GAAGGTGTCCAGTGTAGTGGAGAGAGTGT
1 GAAGGTGTCCAGTGTAGTGGAGAGAGTGT
* *
42425 GAAGGCGTCAAGTGTAGTGGAGAGAGTGT
1 GAAGGTGTCCAGTGTAGTGGAGAGAGTGT
*
42454 GAAGGTGGCCAGTGTAG
1 GAAGGTGTCCAGTGTAG
42471 ACGAAGGTGT
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.25, C:0.08, G:0.45, T:0.21
Consensus pattern (29 bp):
GAAGGTGTCCAGTGTAGTGGAGAGAGTGT
Left flanking sequence: Indices 41896 -- 42395
TGCGGATGAACCAGTTGAAGGAGGAGCGGGCGCAGATCAAGCGCGAAAAGGCCGCGAAGAAGGAA
GAGGAGCGGGTGAAGAAGGAGGCGGAAGCGGGTCTAAAAGAGGCTACCATCAAGACGGAGACCGG
TCTAGTTAAACAGGAGGTCAATGGGGTTGATCGGGTTAATCAGGCGAAACAGGCAGCGGTGAAGC
TGGAGGGCGAGCCCATAATCAAGCAGGAGGTGACGTTCAACAGCTTTGGCAGCGACTTCTCGCCG
CCGTCTCCGGACACCCCCTCGAAGAAGAAGCGGCCCGCTCCCAAGTTGGAGCGGCTGGGCACGAA
GCACCGGGTGCTTTCGCCCGAGCCCAGCTTCACCGAGGACGACATGCCGTTGCGGAACATCACCC
CGCAGCTCAACACCCCCTTTTAATGACCTTATGATGTAGCTACGATTTATAGAGAAAGATTGGTT
TCAGCGATGAGTAGAGGATGGAAGGATGGAGAGTGGAGAGTGGAG
Right flanking sequence: Indices 42471 -- 42970
ACGAAGGTGTCAAGTGTGGAGAGAGGGTCAAGTGTGGTGGTCCGTGGGTTGTGGAAGGGCTGGAG
ACTATAAAAACCAGCTGACCATACTAAAAGACTGTGGGTGTGGAGGTGTTGGTTGACTAGATCGC
AGTACAAGTCGAAGGACTTGTCTAGTCTAGAGAGTACACAGGGCGGAGAAGACAACGGAGCAAGG
AGCAAGCCACGCTCACCAAACTCTCTACGTTACAGAACAGCCAATTGGAAACCAGCATTGCGTAT
CTCTCAATCTCCGGCCGGCGGGTGTGATACCCGTTGTAGCCATCCCACTAGTTGCAGTTAGTGAC
GATTAGCACATGACTTCGCTCACCGTACGACTCGACCATACCATTTCGAACTCCCAGGCCCCAGT
AAGCTTTAAAGAGTCTAAATAGCGCGAGGTATAGCACCACTTATGGCTCCCTACCACCCCCCACA
GCCACACAAAACACTACACCCACCACTCCTCTACCCCCCCACCTC
Found at i:42486 original size:19 final size:18
Alignment explanation
Indices: 42454--42505 Score: 52
Period size: 19 Copynumber: 2.8 Consensus size: 18
42444 GAGAGAGTGT
* *
42454 GAAGGTGGCCAGTGTAGA
1 GAAGGTGTCAAGTGTAGA
*
42472 CGAAGGTGTCAAGTGTGGA
1 -GAAGGTGTCAAGTGTAGA
42491 GAGAGG-GTCAAGTGT
1 GA-AGGTGTCAAGTGT
42506 GGTGGTCCGT
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
18 11 0.38
19 18 0.62
ACGTcount: A:0.27, C:0.10, G:0.44, T:0.19
Consensus pattern (18 bp):
GAAGGTGTCAAGTGTAGA
Left flanking sequence: Indices 41954 -- 42453
GAAGGAAGAGGAGCGGGTGAAGAAGGAGGCGGAAGCGGGTCTAAAAGAGGCTACCATCAAGACGG
AGACCGGTCTAGTTAAACAGGAGGTCAATGGGGTTGATCGGGTTAATCAGGCGAAACAGGCAGCG
GTGAAGCTGGAGGGCGAGCCCATAATCAAGCAGGAGGTGACGTTCAACAGCTTTGGCAGCGACTT
CTCGCCGCCGTCTCCGGACACCCCCTCGAAGAAGAAGCGGCCCGCTCCCAAGTTGGAGCGGCTGG
GCACGAAGCACCGGGTGCTTTCGCCCGAGCCCAGCTTCACCGAGGACGACATGCCGTTGCGGAAC
ATCACCCCGCAGCTCAACACCCCCTTTTAATGACCTTATGATGTAGCTACGATTTATAGAGAAAG
ATTGGTTTCAGCGATGAGTAGAGGATGGAAGGATGGAGAGTGGAGAGTGGAGGAAGGTGTCCAGT
GTAGTGGAGAGAGTGTGAAGGCGTCAAGTGTAGTGGAGAGAGTGT
Right flanking sequence: Indices 42506 -- 43005
GGTGGTCCGTGGGTTGTGGAAGGGCTGGAGACTATAAAAACCAGCTGACCATACTAAAAGACTGT
GGGTGTGGAGGTGTTGGTTGACTAGATCGCAGTACAAGTCGAAGGACTTGTCTAGTCTAGAGAGT
ACACAGGGCGGAGAAGACAACGGAGCAAGGAGCAAGCCACGCTCACCAAACTCTCTACGTTACAG
AACAGCCAATTGGAAACCAGCATTGCGTATCTCTCAATCTCCGGCCGGCGGGTGTGATACCCGTT
GTAGCCATCCCACTAGTTGCAGTTAGTGACGATTAGCACATGACTTCGCTCACCGTACGACTCGA
CCATACCATTTCGAACTCCCAGGCCCCAGTAAGCTTTAAAGAGTCTAAATAGCGCGAGGTATAGC
ACCACTTATGGCTCCCTACCACCCCCCACAGCCACACAAAACACTACACCCACCACTCCTCTACC
CCCCCACCTCTTTCCTTCCTTCACTTTTCCTTCTCACTAATGCAC
Found at i:45088 original size:16 final size:16
Alignment explanation
Indices: 45069--45126 Score: 62
Period size: 16 Copynumber: 3.6 Consensus size: 16
45059 AGAGTCTGGG
*
45069 TGAAAACGAGTGTTGA
1 TGAAAACGAGTCTTGA
*
45085 TGAAGACGAGTCTTGA
1 TGAAAACGAGTCTTGA
**
45101 TGAAGGCGAGTCTTGA
1 TGAAAACGAGTCTTGA
* *
45117 CGAAGACGAG
1 TGAAAACGAG
45127 ACCCATAGGG
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
16 37 1.00
ACGTcount: A:0.33, C:0.12, G:0.34, T:0.21
Consensus pattern (16 bp):
TGAAAACGAGTCTTGA
Left flanking sequence: Indices 44569 -- 45068
GAAGAAGCGGCCCGAGGGAGCCCCCGAGCCCGAGTGGGAGCACATCGGGTGTCTGATGACGCTCG
AGGCGATCGTGGCTCCCGAGAACTGGACGTTCATCGAGCCCAAGTGGGACTTGGACTTGAACGCG
CACACCTGGGTCAACGAGTACTTTGTGAACGATCTAGTGATGATCGACGACGGAGAGAAGTGGGC
CTACGATGTCGAGACCCCCGGGACGGATATCTTTCGCCGACGACGGTGGGTCCGCAACGTCCGCC
GCCGTACGTGGAGGGATAAGATGGAGGAGCTCGAGGCTGAAAAATGGGACTTGAAGGTGGTGACC
AACCCAACGAAGTCGGTTACTGGATGAAGGGGGTTACTGGCTGAAGTTGGCGACAAACCAACGAA
GTCGGTTACGGGCGGGAATCATCGGCTGAAGTCGGACTGGCTAATCAGTATAATAGCATAGCATT
AATGGTAATAGAATGGTACGGAAGGTTGAAGTAGTAGAGTCTGGG
Right flanking sequence: Indices 45127 -- 45626
ACCCATAGGGTCTTACAAGAAAGAAATCGGGTGTCTTTGTTGAATTGGTTTGTGTATTATGCTAT
GTGTTAATGCTGGTGGCTCCTTAGAACCGAATCTTTTGCTCCATGCTAATGCTATTGAGTCTTGG
ATAGCAACTCTTGAGTTGAACAACTCTTGACAGTATCACGGTGACTCATCCTATCCACCACTCCC
TCTTCTTCCTACTTCATGAACTCCATCAAGTCCAACCCTCCGATCCCCAGCGGCTTCTTTTCCTT
CTCCTTCTTCGCAAGCATCGCTCCCAACAGGTTTTCCCGCCGCTTCTGGGCCCGGAGCTTCGCCT
TGTTCGTGGTCTTGGGCTTGGCCGCCTGCGGCTCCTCCTCCCGGATCAACGGTCGGTGCTGGACC
AACAGGTAGTCTCTGACCTTGTGCTTACACAGCCGGCACTTGATTTCTAGGTAGCGCCGGCGCTT
GTACCTGATGCGGATGGTCGCACTGATGCCTGGGATGAACAAAAC
Found at i:45096 original size:32 final size:32
Alignment explanation
Indices: 45060--45126 Score: 80
Period size: 32 Copynumber: 2.1 Consensus size: 32
45050 TGAAGTAGTA
* * *
45060 GAGTCTGGGTGAAAACGAGTGTTGATGAAGAC
1 GAGTCTGGATGAAAACGAGTCTTGACGAAGAC
* **
45092 GAGTCTTGATGAAGGCGAGTCTTGACGAAGAC
1 GAGTCTGGATGAAAACGAGTCTTGACGAAGAC
45124 GAG
1 GAG
45127 ACCCATAGGG
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.30, C:0.12, G:0.37, T:0.21
Consensus pattern (32 bp):
GAGTCTGGATGAAAACGAGTCTTGACGAAGAC
Left flanking sequence: Indices 44560 -- 45059
CCAGGCGAAGAAGAAGCGGCCCGAGGGAGCCCCCGAGCCCGAGTGGGAGCACATCGGGTGTCTGA
TGACGCTCGAGGCGATCGTGGCTCCCGAGAACTGGACGTTCATCGAGCCCAAGTGGGACTTGGAC
TTGAACGCGCACACCTGGGTCAACGAGTACTTTGTGAACGATCTAGTGATGATCGACGACGGAGA
GAAGTGGGCCTACGATGTCGAGACCCCCGGGACGGATATCTTTCGCCGACGACGGTGGGTCCGCA
ACGTCCGCCGCCGTACGTGGAGGGATAAGATGGAGGAGCTCGAGGCTGAAAAATGGGACTTGAAG
GTGGTGACCAACCCAACGAAGTCGGTTACTGGATGAAGGGGGTTACTGGCTGAAGTTGGCGACAA
ACCAACGAAGTCGGTTACGGGCGGGAATCATCGGCTGAAGTCGGACTGGCTAATCAGTATAATAG
CATAGCATTAATGGTAATAGAATGGTACGGAAGGTTGAAGTAGTA
Right flanking sequence: Indices 45127 -- 45626
ACCCATAGGGTCTTACAAGAAAGAAATCGGGTGTCTTTGTTGAATTGGTTTGTGTATTATGCTAT
GTGTTAATGCTGGTGGCTCCTTAGAACCGAATCTTTTGCTCCATGCTAATGCTATTGAGTCTTGG
ATAGCAACTCTTGAGTTGAACAACTCTTGACAGTATCACGGTGACTCATCCTATCCACCACTCCC
TCTTCTTCCTACTTCATGAACTCCATCAAGTCCAACCCTCCGATCCCCAGCGGCTTCTTTTCCTT
CTCCTTCTTCGCAAGCATCGCTCCCAACAGGTTTTCCCGCCGCTTCTGGGCCCGGAGCTTCGCCT
TGTTCGTGGTCTTGGGCTTGGCCGCCTGCGGCTCCTCCTCCCGGATCAACGGTCGGTGCTGGACC
AACAGGTAGTCTCTGACCTTGTGCTTACACAGCCGGCACTTGATTTCTAGGTAGCGCCGGCGCTT
GTACCTGATGCGGATGGTCGCACTGATGCCTGGGATGAACAAAAC
Found at i:46456 original size:5 final size:5
Alignment explanation
Indices: 46432--46491 Score: 75
Period size: 5 Copynumber: 11.8 Consensus size: 5
46422 CGTAGTCAAT
* * *
46432 TCCTCC TCCTA TCATC TCCTC TCCTC TCCTC TCCTC TCCTT TCCTC TCCTC
1 TCCT-C TCCTC TCCTC TCCTC TCCTC TCCTC TCCTC TCCTC TCCTC TCCTC
*
46483 CCCTC TCCT
1 TCCTC TCCT
46492 TCCCTCTCTC
Statistics
Matches: 46, Mismatches: 8, Indels: 1
0.84 0.15 0.02
Matches are distributed among these distances:
5 42 0.91
6 4 0.09
ACGTcount: A:0.03, C:0.57, G:0.00, T:0.40
Consensus pattern (5 bp):
TCCTC
Left flanking sequence: Indices 45932 -- 46431
GGTGGGAGATGGCTCGAATGTGTTTCTGTTGTGCCGGAGAGCAGCTTGGATACCCTCAACTCCGT
TGGTTTTCTCGTGGTGATTCATTATACCCGGCCTCGGTTAGACGCGGGTCGATAAGCAGTAGCCT
ATAGTAGGGCTGTCAAAGGCTCTGACCAGGGCACTGTGGAGGAGCCCACAATGGGGCTCATGTCT
ATTGTTTACTACCATCCCCCACACTCACACTGCCAAGACCGACGTCGGCTGTGGGGGTCAGAGCC
GCCAAGTCGGGGAAAGCCATGAGTGCATACTGAGGCAATTGAAAGGTTGTAGGGTTTACGTGGTA
ACCGCCAAGCACCTTAGTGAGGAATAGCCTTCAATTGAGGTTGTGCTAGCGCTATTTGTGCCTTG
GACCCGTTCATCTTGTGCCAATCACGAATGCATTAGCACGAATGCGTTAATATGATGCGTGGGTA
TAGATCTACCTTCTCATACCACCCGAGTTATACCACGTAGTCAAT
Right flanking sequence: Indices 46492 -- 46991
TCCCTCTCTCACCTTCACCTTCCCGGCTTAGACCGCAGCCAAAAATAGAAGATCCCGTCGGCTAG
AAGCACACCACCACTACACACCACTACACCACCACACGAATCTAAAAAACCCAGCCAGCCTACCC
AGCCAGCCTACAAGCCGCCTAAACCCCCAAACCCCCACCCTTTCTTCCACCCTCCTACACCCCCA
CCACCCACCTCCCGTCAACCCAACACCCGACGCGTCAAGCCACTTTCCCCTCGCGATTGCCCCAC
TGTAGCCCGATCTTCGGCCTCCCCTCCCAGCCAATCACCGCACGTGAATCTCTGCTGACCGTCAC
TCGCGTCCTATGTACACTCCATGCATGCACCTACTCTCCCAATCAAGCGATAGCGACCTGTGAAC
CCTAACGGACCCATGGCGATGATCCAGGCGTCGGAGCGGCTCATCATCCCGCCCACGGAAACAGG
GGCCAAGGTGCTCAAGACCTGTGTGCGCTGCCGCCAGCACAAGAC
Found at i:46492 original size:20 final size:20
Alignment explanation
Indices: 46446--46499 Score: 81
Period size: 20 Copynumber: 2.7 Consensus size: 20
46436 CCTCCTATCA
* *
46446 TCTCCTCTCCTCTCCTCTCC
1 TCTCCTTTCCTCTCCTCCCC
46466 TCTCCTTTCCTCTCCTCCCC
1 TCTCCTTTCCTCTCCTCCCC
*
46486 TCTCCTTCCCTCTC
1 TCTCCTTTCCTCTC
46500 TCACCTTCAC
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.00, C:0.59, G:0.00, T:0.41
Consensus pattern (20 bp):
TCTCCTTTCCTCTCCTCCCC
Left flanking sequence: Indices 45946 -- 46445
CGAATGTGTTTCTGTTGTGCCGGAGAGCAGCTTGGATACCCTCAACTCCGTTGGTTTTCTCGTGG
TGATTCATTATACCCGGCCTCGGTTAGACGCGGGTCGATAAGCAGTAGCCTATAGTAGGGCTGTC
AAAGGCTCTGACCAGGGCACTGTGGAGGAGCCCACAATGGGGCTCATGTCTATTGTTTACTACCA
TCCCCCACACTCACACTGCCAAGACCGACGTCGGCTGTGGGGGTCAGAGCCGCCAAGTCGGGGAA
AGCCATGAGTGCATACTGAGGCAATTGAAAGGTTGTAGGGTTTACGTGGTAACCGCCAAGCACCT
TAGTGAGGAATAGCCTTCAATTGAGGTTGTGCTAGCGCTATTTGTGCCTTGGACCCGTTCATCTT
GTGCCAATCACGAATGCATTAGCACGAATGCGTTAATATGATGCGTGGGTATAGATCTACCTTCT
CATACCACCCGAGTTATACCACGTAGTCAATTCCTCCTCCTATCA
Right flanking sequence: Indices 46500 -- 46999
TCACCTTCACCTTCCCGGCTTAGACCGCAGCCAAAAATAGAAGATCCCGTCGGCTAGAAGCACAC
CACCACTACACACCACTACACCACCACACGAATCTAAAAAACCCAGCCAGCCTACCCAGCCAGCC
TACAAGCCGCCTAAACCCCCAAACCCCCACCCTTTCTTCCACCCTCCTACACCCCCACCACCCAC
CTCCCGTCAACCCAACACCCGACGCGTCAAGCCACTTTCCCCTCGCGATTGCCCCACTGTAGCCC
GATCTTCGGCCTCCCCTCCCAGCCAATCACCGCACGTGAATCTCTGCTGACCGTCACTCGCGTCC
TATGTACACTCCATGCATGCACCTACTCTCCCAATCAAGCGATAGCGACCTGTGAACCCTAACGG
ACCCATGGCGATGATCCAGGCGTCGGAGCGGCTCATCATCCCGCCCACGGAAACAGGGGCCAAGG
TGCTCAAGACCTGTGTGCGCTGCCGCCAGCACAAGACGAAATGCG
Found at i:46496 original size:10 final size:10
Alignment explanation
Indices: 46454--46499 Score: 58
Period size: 10 Copynumber: 4.6 Consensus size: 10
46444 CATCTCCTCT
46454 CCTCTCC-TC
1 CCTCTCCTTC
*
46463 TCCTCTCCTTT
1 -CCTCTCCTTC
*
46474 CCTCTCCTCC
1 CCTCTCCTTC
46484 CCTCTCCTTC
1 CCTCTCCTTC
46494 CCTCTC
1 CCTCTC
46500 TCACCTTCAC
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
10 30 0.97
11 1 0.03
ACGTcount: A:0.00, C:0.61, G:0.00, T:0.39
Consensus pattern (10 bp):
CCTCTCCTTC
Left flanking sequence: Indices 45954 -- 46453
TTTCTGTTGTGCCGGAGAGCAGCTTGGATACCCTCAACTCCGTTGGTTTTCTCGTGGTGATTCAT
TATACCCGGCCTCGGTTAGACGCGGGTCGATAAGCAGTAGCCTATAGTAGGGCTGTCAAAGGCTC
TGACCAGGGCACTGTGGAGGAGCCCACAATGGGGCTCATGTCTATTGTTTACTACCATCCCCCAC
ACTCACACTGCCAAGACCGACGTCGGCTGTGGGGGTCAGAGCCGCCAAGTCGGGGAAAGCCATGA
GTGCATACTGAGGCAATTGAAAGGTTGTAGGGTTTACGTGGTAACCGCCAAGCACCTTAGTGAGG
AATAGCCTTCAATTGAGGTTGTGCTAGCGCTATTTGTGCCTTGGACCCGTTCATCTTGTGCCAAT
CACGAATGCATTAGCACGAATGCGTTAATATGATGCGTGGGTATAGATCTACCTTCTCATACCAC
CCGAGTTATACCACGTAGTCAATTCCTCCTCCTATCATCTCCTCT
Right flanking sequence: Indices 46500 -- 46999
TCACCTTCACCTTCCCGGCTTAGACCGCAGCCAAAAATAGAAGATCCCGTCGGCTAGAAGCACAC
CACCACTACACACCACTACACCACCACACGAATCTAAAAAACCCAGCCAGCCTACCCAGCCAGCC
TACAAGCCGCCTAAACCCCCAAACCCCCACCCTTTCTTCCACCCTCCTACACCCCCACCACCCAC
CTCCCGTCAACCCAACACCCGACGCGTCAAGCCACTTTCCCCTCGCGATTGCCCCACTGTAGCCC
GATCTTCGGCCTCCCCTCCCAGCCAATCACCGCACGTGAATCTCTGCTGACCGTCACTCGCGTCC
TATGTACACTCCATGCATGCACCTACTCTCCCAATCAAGCGATAGCGACCTGTGAACCCTAACGG
ACCCATGGCGATGATCCAGGCGTCGGAGCGGCTCATCATCCCGCCCACGGAAACAGGGGCCAAGG
TGCTCAAGACCTGTGTGCGCTGCCGCCAGCACAAGACGAAATGCG
Found at i:46580 original size:10 final size:11
Alignment explanation
Indices: 46561--46591 Score: 55
Period size: 10 Copynumber: 2.9 Consensus size: 11
46551 GGCTAGAAGC
46561 ACACCACCACT
1 ACACCACCACT
46572 ACA-CACCACT
1 ACACCACCACT
46582 ACACCACCAC
1 ACACCACCAC
46592 ACGAATCTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
10 10 0.53
11 9 0.47
ACGTcount: A:0.39, C:0.55, G:0.00, T:0.06
Consensus pattern (11 bp):
ACACCACCACT
Left flanking sequence: Indices 46061 -- 46560
TATAGTAGGGCTGTCAAAGGCTCTGACCAGGGCACTGTGGAGGAGCCCACAATGGGGCTCATGTC
TATTGTTTACTACCATCCCCCACACTCACACTGCCAAGACCGACGTCGGCTGTGGGGGTCAGAGC
CGCCAAGTCGGGGAAAGCCATGAGTGCATACTGAGGCAATTGAAAGGTTGTAGGGTTTACGTGGT
AACCGCCAAGCACCTTAGTGAGGAATAGCCTTCAATTGAGGTTGTGCTAGCGCTATTTGTGCCTT
GGACCCGTTCATCTTGTGCCAATCACGAATGCATTAGCACGAATGCGTTAATATGATGCGTGGGT
ATAGATCTACCTTCTCATACCACCCGAGTTATACCACGTAGTCAATTCCTCCTCCTATCATCTCC
TCTCCTCTCCTCTCCTCTCCTTTCCTCTCCTCCCCTCTCCTTCCCTCTCTCACCTTCACCTTCCC
GGCTTAGACCGCAGCCAAAAATAGAAGATCCCGTCGGCTAGAAGC
Right flanking sequence: Indices 46592 -- 47091
ACGAATCTAAAAAACCCAGCCAGCCTACCCAGCCAGCCTACAAGCCGCCTAAACCCCCAAACCCC
CACCCTTTCTTCCACCCTCCTACACCCCCACCACCCACCTCCCGTCAACCCAACACCCGACGCGT
CAAGCCACTTTCCCCTCGCGATTGCCCCACTGTAGCCCGATCTTCGGCCTCCCCTCCCAGCCAAT
CACCGCACGTGAATCTCTGCTGACCGTCACTCGCGTCCTATGTACACTCCATGCATGCACCTACT
CTCCCAATCAAGCGATAGCGACCTGTGAACCCTAACGGACCCATGGCGATGATCCAGGCGTCGGA
GCGGCTCATCATCCCGCCCACGGAAACAGGGGCCAAGGTGCTCAAGACCTGTGTGCGCTGCCGCC
AGCACAAGACGAAATGCGACGCCCTCGTCACCAACCCGATGGCGTGCACCCACTGTCGCAAGAAG
AAGGCGACGTGTATGTTGGACACCATCACCAAAAACGCCAACCGC
Found at i:46623 original size:13 final size:13
Alignment explanation
Indices: 46605--46632 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
46595 AATCTAAAAA
46605 ACCCAGCCAGCCT
1 ACCCAGCCAGCCT
46618 ACCCAGCCAGCCT
1 ACCCAGCCAGCCT
46631 AC
1 AC
46633 AAGCCGCCTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.25, C:0.54, G:0.14, T:0.07
Consensus pattern (13 bp):
ACCCAGCCAGCCT
Left flanking sequence: Indices 46105 -- 46604
GCCCACAATGGGGCTCATGTCTATTGTTTACTACCATCCCCCACACTCACACTGCCAAGACCGAC
GTCGGCTGTGGGGGTCAGAGCCGCCAAGTCGGGGAAAGCCATGAGTGCATACTGAGGCAATTGAA
AGGTTGTAGGGTTTACGTGGTAACCGCCAAGCACCTTAGTGAGGAATAGCCTTCAATTGAGGTTG
TGCTAGCGCTATTTGTGCCTTGGACCCGTTCATCTTGTGCCAATCACGAATGCATTAGCACGAAT
GCGTTAATATGATGCGTGGGTATAGATCTACCTTCTCATACCACCCGAGTTATACCACGTAGTCA
ATTCCTCCTCCTATCATCTCCTCTCCTCTCCTCTCCTCTCCTTTCCTCTCCTCCCCTCTCCTTCC
CTCTCTCACCTTCACCTTCCCGGCTTAGACCGCAGCCAAAAATAGAAGATCCCGTCGGCTAGAAG
CACACCACCACTACACACCACTACACCACCACACGAATCTAAAAA
Right flanking sequence: Indices 46633 -- 47132
AAGCCGCCTAAACCCCCAAACCCCCACCCTTTCTTCCACCCTCCTACACCCCCACCACCCACCTC
CCGTCAACCCAACACCCGACGCGTCAAGCCACTTTCCCCTCGCGATTGCCCCACTGTAGCCCGAT
CTTCGGCCTCCCCTCCCAGCCAATCACCGCACGTGAATCTCTGCTGACCGTCACTCGCGTCCTAT
GTACACTCCATGCATGCACCTACTCTCCCAATCAAGCGATAGCGACCTGTGAACCCTAACGGACC
CATGGCGATGATCCAGGCGTCGGAGCGGCTCATCATCCCGCCCACGGAAACAGGGGCCAAGGTGC
TCAAGACCTGTGTGCGCTGCCGCCAGCACAAGACGAAATGCGACGCCCTCGTCACCAACCCGATG
GCGTGCACCCACTGTCGCAAGAAGAAGGCGACGTGTATGTTGGACACCATCACCAAAAACGCCAA
CCGCCCGCTGAGCGACACGCTCGAGCGGCTTTCGAACGACGTCGA
Found at i:56598 original size:33 final size:33
Alignment explanation
Indices: 56537--56599 Score: 85
Period size: 33 Copynumber: 1.9 Consensus size: 33
56527 TGGTGCTGCA
*
56537 CCACCTCGGCGCGGCCGCGCACCGGCACCAGCG
1 CCACCTCGGCGCGGCAGCGCACCGGCACCAGCG
56570 CCACCTCGGCGCCGG-AGTCGCACC-GCACCA
1 CCACCTCGGCG-CGGCAG-CGCACCGGCACCA
56600 CGGAGGCACC
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
33 18 0.67
34 9 0.33
ACGTcount: A:0.14, C:0.51, G:0.30, T:0.05
Consensus pattern (33 bp):
CCACCTCGGCGCGGCAGCGCACCGGCACCAGCG
Left flanking sequence: Indices 56037 -- 56536
CTGGGCGCTCTCGTCCCAGAACACCACCAACTTGGCCACCCCGGGGTCCACCGGGGTCACCTGGG
GCCACCGCCCCCGCGCCGCCGCCACCGCGGCGCGGCCCACCTCCGCCAAGTGCCGCTTGGTGCGG
TGCGCCCACCGCATCACCACCAACCCGGCGTGGGCGTCGTCGGCAAGGTCGTGGGCGCGCTCGAG
GGTGGCGTTGCTCACGGGCCCGTCGATGAGCACCCACTGGTGGCCCCGGAACATCGGCAACTCGC
CGGTGGCGACGGTGATCCCCGTCTCGAGCGAGAACATCTTGAGGGTGCCTGCGGCGTACGCCCCC
AACACGGGGCCCGAGGGCGCTGACAGCACCCCGAGGAGTGCCTCATCAGCACCGAGCACCACGAG
GGTCAGCTTGACTGCGGAGGCGTCCCCGACGGCGAGCGCGTCGGTGACGTCGTGCACCGTGGCCC
GGGGGCCGTGCACATCGATGACGTAGGTGCTCAAGTGGTGCTGCA
Right flanking sequence: Indices 56600 -- 57099
CGGAGGCACCGCCGTCGCGCACCACCACCGCGTGTGAACCGTCACCCACGAGCTGGGGGCGGGCC
CCGGTCTTGGTCCGGTGGCCCGTGGCCACGTTGGTGACGGCGGCCGCCAGAGCGACCCAGGGGCC
GCGGGCGTGGTCAATGGCGTCAAAGGATTTGTCGTGGTGGTCGCCAACCTCGCCCAGCTCGGTGA
TCTCGTACACGTGCTTCGAGTCGAGCACCACCCACCCGGCGCCGTTGAGGTGGGCAAACGCCACC
GAGCGCGCGCTGGGGGTGTCCACCGCGGTGCGGTGCCCCTCGGGAGTGAGGAGGTGCAACTGCCC
CGCGGTGTCGAGCACAAGCACCGCGTTGCGGAAGAAGGGCACCACCTGGCGCACCGGGTGCGGCA
AGTGCACCGTGGTGCGGAGCACCCCCAGCTTGGCGTCGCGCACGTCAACGGTGTGCTCGTGGTAG
AGGTACACCGTGGCGTCGTTGGGGGCCACGTAGAGCTCGGCGTCC
Found at i:57377 original size:14 final size:16
Alignment explanation
Indices: 57352--57397 Score: 60
Period size: 14 Copynumber: 3.0 Consensus size: 16
57342 GGTGAAAAAA
*
57352 TGGAGTGAGGGAGGAG
1 TGGAGAGAGGGAGGAG
*
57368 TGG-G-GAGGGAGGGG
1 TGGAGAGAGGGAGGAG
57382 TGGAGAGAGGGAGGAG
1 TGGAGAGAGGGAGGAG
57398 AGACGGAAGA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
14 12 0.46
15 2 0.08
16 12 0.46
ACGTcount: A:0.24, C:0.00, G:0.67, T:0.09
Consensus pattern (16 bp):
TGGAGAGAGGGAGGAG
Left flanking sequence: Indices 56852 -- 57351
ACGCCACCGAGCGCGCGCTGGGGGTGTCCACCGCGGTGCGGTGCCCCTCGGGAGTGAGGAGGTGC
AACTGCCCCGCGGTGTCGAGCACAAGCACCGCGTTGCGGAAGAAGGGCACCACCTGGCGCACCGG
GTGCGGCAAGTGCACCGTGGTGCGGAGCACCCCCAGCTTGGCGTCGCGCACGTCAACGGTGTGCT
CGTGGTAGAGGTACACCGTGGCGTCGTTGGGGGCCACGTAGAGCTCGGCGTCCGCGTGGGGGAGC
GGCACCGCCCAATTGACCCGGGCGGCGTCGAGCCCACTCACCAGCACCACCTGGGCGTCGGTGGT
GGCGACGGCGTGCCCGTGGGCAAGGAACCGGAGCGAGCGGAGGGCCCCGACGCTGTGCACCACCA
TCTCACGGGTGAAGGCGGTTTCTGCCAACACTGCTAGCGCCACGTGCACCAGCACAAGGAGCCGG
AGCACTGGGAACAACATGAGGGTGGGTTGGTGCGCGGTGAAAAAA
Right flanking sequence: Indices 57398 -- 57897
AGACGGAAGAAGGGAGGAAAAGGGGGAGGGGGATAGGGGGAAAGTGAGGTGATGTGAGGAGGAAA
GTGAGAGGAATTGGGTGTGATGTAGTGAGATAGGGTGTTTTGAAGTAAAATGGGTATTTTTAAGG
TGTACATGATGTTGGCAACAAAGTGGAGACAGCGGGTGGCGAGTATCCAATTGAGTGGGTGGGAG
CTTCTGATCTGTATCTTTGGCTTTTTATTTGCAACTCCAATAGCTTCTGGGTGTAGTAAAGCTGC
TATTATATGGTTGATCTGGTGGAACAATGGGACCGCTACGCGATCAAACACTGGAGAGTAACTTA
AATGTAAACCATGTTGTAAGTACATAGCCATATTGCTATAGTCTCCACAGGCAAATGGTTTACCA
AGACCTCAGTTCATTCTCCTCGCTTCACGACTGTGCCCATTGGTTGCTTATCGCGTAGTGGCTAA
TTGCTCACTGCTTCAACCTCATACTCTCGGACCCGCAACCTACAC
Found at i:59796 original size:18 final size:18
Alignment explanation
Indices: 59769--59805 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
59759 ATTTCCGTGA
59769 TCGGAATCAACCGTAAAT
1 TCGGAATCAACCGTAAAT
*
59787 TCGGAGTCAACCGTAAAT
1 TCGGAATCAACCGTAAAT
59805 T
1 T
59806 AGTAAAATGA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.35, C:0.22, G:0.19, T:0.24
Consensus pattern (18 bp):
TCGGAATCAACCGTAAAT
Left flanking sequence: Indices 59269 -- 59768
AGCTCCGACCACGTTCAGTGTCCCGCGTGCGACGTTTATATTGAGAAGACCGACGGGTGTAACAA
GATGACGTGCTCGAGGTGCCATACGAAGTTTTGTTTTCTTTGTGGCGAGGTGACGGGGTCGACTT
ATGATCATTTTAATACCCCCGGGTCGACGTGCTACCGGAAATTGTTCCAGGGAATGGCCGGGATG
GATAATATGGAGGACATGGACCCGTTCATGGTGAGGGAATGAAAGAGTTAGGTTGGGTTAGCGAA
TATGGTGGTTTAAGAGGATAAGTTCTATAGATTAAGCGAATTTCAAGCAATTGAGATATTTCAGT
AGTGGTGAGCGTAAAATTGGTTGTGTCTTTATTTCTATCGGTTTCGTTCTCTTGGCTTGTGTATC
CAATGTTAATACACAATTAGAGTTAGAATATAATAAGAAATAAGTAATTTGGTACATAGCTAGCT
AGTAGTCTTAAATAGCGGGAGAATTCGCTTTTACTATTTCCGTGA
Right flanking sequence: Indices 59806 -- 60305
AGTAAAATGACAGGGTATAGTCGTTACGGGGTGTAGGAAAGATGGATAGTGGGCCCATTATATCC
CATAATTCCATCAAAGATGTTCAGTGCGTAGCTAGCTAGTGGTCTATATAGTTGATGAAACTCGT
TATCAGAGTTTATTCGTATTAGTGGTATATCACTCGTATTGGTGGTATACCGTGAATTTGTAATG
ACAACGGATCTTTAACCTTTTGAGGCGTTAATAAGATGGATCTGTGGTCAATTCTACCCCTATTG
GGATATAATTCCTTCAAGATAATAAGATGGTGATGGAAAACTACAGTTCTGACCATTTTGTGTCA
GTACTGTTTTCGGTTAGATAATTTAGTAAAACCAGGCACGCCTGCGTATAGCGTCTTAGACGACG
GATATGGGGCGGACACTGGTACAAGAATACAATTCTTGTTTACTGTTTAATTTATATCCTCACTT
TCATACTACTATTCCAGTGTTAATAGTACGTGATCGAGGGCTCTA
Found at i:61124 original size:16 final size:16
Alignment explanation
Indices: 61103--61134 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
61093 TCCATCAATT
61103 AGATACTAATATTCAC
1 AGATACTAATATTCAC
*
61119 AGATACTAATCTTCAC
1 AGATACTAATATTCAC
61135 CAGTTGCAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.41, C:0.22, G:0.06, T:0.31
Consensus pattern (16 bp):
AGATACTAATATTCAC
Left flanking sequence: Indices 60603 -- 61102
AGTGGAACTTGACCAGTATAATTCTATCAAACATGTTTTGTACTTAGCTACTGGTGGTCATATAT
AGCGGGGAATTCGTTATTAAAGTTTACGATAAACCTTAATTCCAGTCTTTTAAGTTAACTATACC
CCTATATCCCGATAGGGGTCTAATTCCATCAGTTGTTTAGTACGTAGCTAGCTAGTGGTCTCGTA
GAGCGGAAGAATCCGCTCTTAGAATTTGTGCGTATCTGCCATACATTAGTAAAAATAATGGAATC
TTAGTCATTTAGTGGAGTGGATAAGATCGACACCTGGCTCATTTTCTTCCACAAGGGTTAATTCC
ATCAATAACTGTTTCTTTACGGCTACTTGGTGGACTTATAAAGGGGACGAATTCGCTACTAGTGC
TTACCCGATTCGGATTTACATCAAAGGTTAGTATACACATATCTAACCAACGGAGTTTGGAACAA
TGATCATGTGACTCTGTACCCCAGAAAGGGGCTTTTCCATCAATT
Right flanking sequence: Indices 61135 -- 61634
CAGTTGCAAACACCATGACGCTTTCAGAGAACCCCGCTTTAATTGCCCAACCAAAGCTCGCCGCT
ACTTGGAATAACGCCAGCGACGATGAAACCGCAAGCACCCCGGCACCGTCTGAGTGTGAGCGGGT
TCCAACGTTCGAGAAATTGGTTTTACGAAAGCTTGATGAATTGATAGACAGCGTCGACAGGGCCG
GAGCCAAAAAAACAGACTCGGGGTTGGGCGACCTCCAAACCGAGTTACTGAACTTGCGTATCCAA
GCCCCAGCCAGTCGTTTGAGCGGTGACCGAGACGCTTGGGCCCCTCCCGATGGCCTCTCTGCCGG
TCGTTCAGATGAGAACTGGGACGAGTTCAAACGACCCGTCACCTACTTCAGCAACACCAACGTCC
CGGTACCGATGAAGGCACGATCCGAACCGTGTGAGTCCGTCTTAAAACGGGCTCTCAGCAGCTTC
CCCAATGGCTTGTGGGGCGACATCGTTGAGAATGCCCCCAAGTCG
Found at i:64144 original size:20 final size:21
Alignment explanation
Indices: 64104--64148 Score: 65
Period size: 22 Copynumber: 2.1 Consensus size: 21
64094 GCATGGTGGT
*
64104 GTGTTTTGAGGTGTACAGTGAG
1 GTGTTCTGAGGTG-ACAGTGAG
64126 GTGTTCTGAGGTG-CAGTGAG
1 GTGTTCTGAGGTGACAGTGAG
64146 GTG
1 GTG
64149 CAAAAAGTGG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 10 0.45
22 12 0.55
ACGTcount: A:0.16, C:0.07, G:0.44, T:0.33
Consensus pattern (21 bp):
GTGTTCTGAGGTGACAGTGAG
Left flanking sequence: Indices 63604 -- 64103
TCCTCCATTTCCTCGAGCTTGTCCTCGAGGATCAGCAGATCGTTGTCATCGGGCTTGAGCAAGTA
GTGGAACAACGACAGGCCCCGCTTGTTCACCTTGATGAGCGTCGGGGTGCCCATCGGGTGGCGGA
AGTAGTAGGCGGGAATCGAAACCGCGACCAAGAGGGTGAGAAGAGGGTAGACGAAAATAAGGTGA
GGGTGCAAGCACAAGGCAGTGTAGAGAGCCACAAACACCAACGTCTTCAGCGGCCGGCGCCACAG
CAAGATGTGCACAAACCCGTACTGGACGCGGAACACGGGGCCCAAGAGCTTCAGGATCTGGCGGA
AATTGGAGGCAATCACCCGCACCGACAACCCTGGTTGCCGTTTGCGGTCGGGATCGTGGAGCCGG
CGCTCGATGTCCCGGCGTTCCACCAGCAGCTCGTCGACGGTCGACGCCACGAGCCGCTCAATCAC
CTTGTCCATGAAATGGGACGTCATCGAGGAGCCCAGCATGGTGGT
Right flanking sequence: Indices 64149 -- 64648
CAAAAAGTGGGGTTGAGTGAGTAGTTTACATGTGATAAGCGAGCCGCGAACGGGAAGCGAAATCG
GGGGTTAGAGGCAAATTGGAGAAAAGCGGTGAGCCGGGGCTTGAATATGGACGGTAATTGAGCAC
GCCGAGCACGCTTCCAGCTCAATTGTGGCGGCGTAAACGGGTTCTACTGGTGGATAAGGGGTTGC
TACCGGCGACCCGTGCTCGTAACAAAACCGTTGCGCGTGAGCACTGCATAGGAGCACTGCATAGC
CTAAGGTTGAATCGGTGGCGATTGGCAGATTCTGGAGTAGAGAAGGTCGTTGAGGGTAACCGTGG
GTTCTAACTGATGATTACTGGTGTTTACTGGTGCTTACTGGTTTTTACTGGTGTTTATTGTGTCA
ATTGAGTGTTTGGCTATATAAGGTTCTTTTCTGGCAATGGGCCTCAATGGGACTACGAAAGTAAA
ATTACCTCTCAATCACTTCGCTTAGAGTCTCAGGTTCCCTAGACT
Found at i:64400 original size:13 final size:13
Alignment explanation
Indices: 64382--64407 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
64372 CGTTGCGCGT
64382 GAGCACTGCATAG
1 GAGCACTGCATAG
64395 GAGCACTGCATAG
1 GAGCACTGCATAG
64408 CCTAAGGTTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.23, G:0.31, T:0.15
Consensus pattern (13 bp):
GAGCACTGCATAG
Left flanking sequence: Indices 63882 -- 64381
GTACTGGACGCGGAACACGGGGCCCAAGAGCTTCAGGATCTGGCGGAAATTGGAGGCAATCACCC
GCACCGACAACCCTGGTTGCCGTTTGCGGTCGGGATCGTGGAGCCGGCGCTCGATGTCCCGGCGT
TCCACCAGCAGCTCGTCGACGGTCGACGCCACGAGCCGCTCAATCACCTTGTCCATGAAATGGGA
CGTCATCGAGGAGCCCAGCATGGTGGTGTGTTTTGAGGTGTACAGTGAGGTGTTCTGAGGTGCAG
TGAGGTGCAAAAAGTGGGGTTGAGTGAGTAGTTTACATGTGATAAGCGAGCCGCGAACGGGAAGC
GAAATCGGGGGTTAGAGGCAAATTGGAGAAAAGCGGTGAGCCGGGGCTTGAATATGGACGGTAAT
TGAGCACGCCGAGCACGCTTCCAGCTCAATTGTGGCGGCGTAAACGGGTTCTACTGGTGGATAAG
GGGTTGCTACCGGCGACCCGTGCTCGTAACAAAACCGTTGCGCGT
Right flanking sequence: Indices 64408 -- 64907
CCTAAGGTTGAATCGGTGGCGATTGGCAGATTCTGGAGTAGAGAAGGTCGTTGAGGGTAACCGTG
GGTTCTAACTGATGATTACTGGTGTTTACTGGTGCTTACTGGTTTTTACTGGTGTTTATTGTGTC
AATTGAGTGTTTGGCTATATAAGGTTCTTTTCTGGCAATGGGCCTCAATGGGACTACGAAAGTAA
AATTACCTCTCAATCACTTCGCTTAGAGTCTCAGGTTCCCTAGACTCAACCAGTTGCGCTTTATC
GCCACTGGCTTCTTTTTTACGCTTCTCTTGCACCCTATTGTAGTGTTCTTGGAGCTCAAACTCTA
CACTAGAGGACAACACGTGAACGAGTCGTGGCATTTCCTTAGTATCCCGGCTGGGAGGTGACATT
ACTAGCCGGTTCAACTCGAGCTCCATCTGATACACCCGCTCGCCGAGTGCTTCGTTGTTGAGAGA
TCTCACATCCCGGAACATCTCTAAAAAGAGGTCCCGAAACTGGCG
Found at i:64530 original size:10 final size:10
Alignment explanation
Indices: 64488--64530 Score: 68
Period size: 10 Copynumber: 4.3 Consensus size: 10
64478 TAACTGATGA
64488 TTACTGGTGT
1 TTACTGGTGT
*
64498 TTACTGGTGC
1 TTACTGGTGT
*
64508 TTACTGGTTT
1 TTACTGGTGT
64518 TTACTGGTGT
1 TTACTGGTGT
64528 TTA
1 TTA
64531 TTGTGTCAAT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
10 29 1.00
ACGTcount: A:0.12, C:0.12, G:0.26, T:0.51
Consensus pattern (10 bp):
TTACTGGTGT
Left flanking sequence: Indices 63988 -- 64487
AGCCGGCGCTCGATGTCCCGGCGTTCCACCAGCAGCTCGTCGACGGTCGACGCCACGAGCCGCTC
AATCACCTTGTCCATGAAATGGGACGTCATCGAGGAGCCCAGCATGGTGGTGTGTTTTGAGGTGT
ACAGTGAGGTGTTCTGAGGTGCAGTGAGGTGCAAAAAGTGGGGTTGAGTGAGTAGTTTACATGTG
ATAAGCGAGCCGCGAACGGGAAGCGAAATCGGGGGTTAGAGGCAAATTGGAGAAAAGCGGTGAGC
CGGGGCTTGAATATGGACGGTAATTGAGCACGCCGAGCACGCTTCCAGCTCAATTGTGGCGGCGT
AAACGGGTTCTACTGGTGGATAAGGGGTTGCTACCGGCGACCCGTGCTCGTAACAAAACCGTTGC
GCGTGAGCACTGCATAGGAGCACTGCATAGCCTAAGGTTGAATCGGTGGCGATTGGCAGATTCTG
GAGTAGAGAAGGTCGTTGAGGGTAACCGTGGGTTCTAACTGATGA
Right flanking sequence: Indices 64531 -- 65030
TTGTGTCAATTGAGTGTTTGGCTATATAAGGTTCTTTTCTGGCAATGGGCCTCAATGGGACTACG
AAAGTAAAATTACCTCTCAATCACTTCGCTTAGAGTCTCAGGTTCCCTAGACTCAACCAGTTGCG
CTTTATCGCCACTGGCTTCTTTTTTACGCTTCTCTTGCACCCTATTGTAGTGTTCTTGGAGCTCA
AACTCTACACTAGAGGACAACACGTGAACGAGTCGTGGCATTTCCTTAGTATCCCGGCTGGGAGG
TGACATTACTAGCCGGTTCAACTCGAGCTCCATCTGATACACCCGCTCGCCGAGTGCTTCGTTGT
TGAGAGATCTCACATCCCGGAACATCTCTAAAAAGAGGTCCCGAAACTGGCGGGGAGAAAGCACC
TTGTAAGCATGCTGGACAAAGCCGAGGTATAGGATCATGAACGGCCGGAACTGCCCTCTACTGGC
AAAGGTTTCACTGGTGAGCTTGTTCGCACAGAGCCTAAGCCGCCA
Found at i:74295 original size:17 final size:17
Alignment explanation
Indices: 74269--74301 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
74259 GTATGATGCG
74269 ATGGCCACCAGAATAGA
1 ATGGCCACCAGAATAGA
*
74286 ATGGCTACCAGAATAG
1 ATGGCCACCAGAATAG
74302 CTACCCATGC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.39, C:0.21, G:0.24, T:0.15
Consensus pattern (17 bp):
ATGGCCACCAGAATAGA
Left flanking sequence: Indices 73769 -- 74268
CCACGTGTTTCCGGCGGATGGGGTGGAACCTGACCGACTTTTTGGCGGACGTGTTCCTGGTGATT
TGCTTGCTTTCCAACTCCGTGGGGACGTGTGATCCCTTGCCTCGTGTGTCCCACGCGACGCTCCT
GATCAAGCACATGGAGTTGTTGCTTGACCAGTGGGGTCTGCTGAAGATCTCGTACCTGGAGCGCT
GGTACAACAACGACCCCCCGATGGCTGGGGCTACTGAAGAGGAGGAGATGAACCAGTTGCTCGAG
GAGGGCCACGAGCACATCATCCAGCACTTGGACTACAAGCTGTTCTTCAGTCACGACGGCCAGTG
TGCGATTAACATCTTGTTGTACTCGCACATGATGTACCAGGCGTATGACGAGATGGTGGTGATTC
TCAAGAGCCTTGTTGGTGAGAAGTTTGACTACAACGAGGAGATTTTGATGGACGTCTACACGAGC
TGAGGCCAGTGAACACCACGAATGTGTGAATACGCGTATGATGCG
Right flanking sequence: Indices 74302 -- 74801
CTACCCATGCGTCATACCCAACACATTCTTCTGGATGTATTGTATATAATGAAATCATATGAGTT
AGAGGTAATCAACTCAGGGACCCAAGTATGCTGCCAACGGTAGTTTTCCAATTGTATCCTAGTCA
GTTGTTGACTTCACGTGGTAGAGAGCTTCCCGTGGTAGTGATTGCTGCTGTCTCTCCAACAATAA
GACAACATATCAACACTTCCAACCCCTGAACCCTGGACCCTACTAAGTCTCGTTTCAGTAACTTT
CTCAGTCTCTCGGTCTCTCTCTCTTTCTCTTTCTCTTTCTCTCTATCTCTCATTCTCTCTCCATC
CCTCCCACTTACCCCTTCCCTCTAACTCACTCATTATCATTATCTATAACTCTAGTACACCTTGT
TCAAGAACGTCTGGTTCTTGAAGTCCCACGAGTCGTCCGAGATGCGCCCACGCAACACGGGGATC
TCCAGCCCCTTGACGTACACGTCCTCAAACAAGATCTGGAACAGC
Found at i:74622 original size:12 final size:12
Alignment explanation
Indices: 74575--74605 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
74565 AGTCTCTCGG
74575 TCTCTCTCTCTT
1 TCTCTCTCTCTT
*
74587 TCTCTTTCTCTT
1 TCTCTCTCTCTT
74599 TCTCTCT
1 TCTCTCT
74606 ATCTCTCATT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.00, C:0.39, G:0.00, T:0.61
Consensus pattern (12 bp):
TCTCTCTCTCTT
Left flanking sequence: Indices 74075 -- 74574
TCAGTCACGACGGCCAGTGTGCGATTAACATCTTGTTGTACTCGCACATGATGTACCAGGCGTAT
GACGAGATGGTGGTGATTCTCAAGAGCCTTGTTGGTGAGAAGTTTGACTACAACGAGGAGATTTT
GATGGACGTCTACACGAGCTGAGGCCAGTGAACACCACGAATGTGTGAATACGCGTATGATGCGA
TGGCCACCAGAATAGAATGGCTACCAGAATAGCTACCCATGCGTCATACCCAACACATTCTTCTG
GATGTATTGTATATAATGAAATCATATGAGTTAGAGGTAATCAACTCAGGGACCCAAGTATGCTG
CCAACGGTAGTTTTCCAATTGTATCCTAGTCAGTTGTTGACTTCACGTGGTAGAGAGCTTCCCGT
GGTAGTGATTGCTGCTGTCTCTCCAACAATAAGACAACATATCAACACTTCCAACCCCTGAACCC
TGGACCCTACTAAGTCTCGTTTCAGTAACTTTCTCAGTCTCTCGG
Right flanking sequence: Indices 74606 -- 75105
ATCTCTCATTCTCTCTCCATCCCTCCCACTTACCCCTTCCCTCTAACTCACTCATTATCATTATC
TATAACTCTAGTACACCTTGTTCAAGAACGTCTGGTTCTTGAAGTCCCACGAGTCGTCCGAGATG
CGCCCACGCAACACGGGGATCTCCAGCCCCTTGACGTACACGTCCTCAAACAAGATCTGGAACAG
CGCGTCCGGAGGCGCGTCCTGCTCGGCAAGCGCCACCTGCTCGTCCACGTACTTGCGCGCCTTCT
TGTCGTAGGCCTTGATCTCGTCCTCGGTGGCAATGCCCTTCTCGATCATCGTCGCCTTCAACCCG
GCAATGGGGTCGTTGCGCGACCGCATGTGCTGCACCTCCTCACGGGTTCTGTAGGTGGTACCGGG
GTCGGACATCGAGTGGCCACCGTACCGGTAGGTCTCGTACTCCAACACAAGCGGGCCGTTGCCCG
ACAGCGCCCAGTCCTTGGCAAACTTGGACGCCTGGTAGCACGCCA
Found at i:90872 original size:10 final size:10
Alignment explanation
Indices: 90859--90886 Score: 56
Period size: 10 Copynumber: 2.8 Consensus size: 10
90849 GAACGGAGGA
90859 GAGGCGAGCG
1 GAGGCGAGCG
90869 GAGGCGAGCG
1 GAGGCGAGCG
90879 GAGGCGAG
1 GAGGCGAG
90887 GAGTGAGAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.21, C:0.18, G:0.61, T:0.00
Consensus pattern (10 bp):
GAGGCGAGCG
Left flanking sequence: Indices 90359 -- 90858
TTTCAGGTCGGTCGAGCCCAACCACTCGTTGAACCACGGAATATACACCGCAAACAGGGCAATCA
GGTAGGCAACACTCGCTTTGAGCACCAGCCTGACCACGGGGTCGTGGTAGTATCGGGCGAGGTCG
TGCCACCACCGGGTGGGCAGCGCATTCCCCAAGAGCGGTGTCAGCTCCGTCAGCGCCGCCAGCGA
GTTCAAGTTGGAAATGGTCACCTGGCGACGCACACGTTCCCCGGTCTGGGCAAGGATTACCAGCG
GTTGGCGGGTGAAGGCCTGTCTCGGAGTAAACGACACGGGCAGTGGCGTGCGTTCGGGCACGTCC
AAGTTGCCCTTGGGTAGTTTTAGCGACTTAGCAGCATCTGGCATTGCCGTACGAGCCACTTGGTT
AAGGAGATGGCACGATTATGGGTTTGTTCTTGGACCCCGGGCAGTGTGCAGGAGATACGTCAAGG
GTGCAGAGAAGATGGTGAACACCCAACGGGGAGGCGAACGGAGGA
Right flanking sequence: Indices 90887 -- 91386
GAGTGAGAAAGTAGCGGAGGTGGGTGGTAGTTTGTGGTAGTTGTGGTTACGGTATGCGCAAGCGA
GCCAATTGGCTGCTCTGGGTGGCGTATTGGAGGTAATCCGGAACAACTAGCCATCATGACCACCC
ACACGTACCAGGCTGCTACCACCAGCGCCACGATCGTTCCACAGATTCGGCGATCCTCGGTGGGC
TCACTCCGGTTGCAATGCAACCCATGCATGATCGATCTGGAGTTGCATGGAGCCCCGCTGAAGAA
CAGGAGGCCAACGTTGTTGCCCGTGGATCTCTGTCACAGGTGGGTGAAATTGTCGAGGGTGTCTG
ATGTCGTGTGTGGGAGGTGATGTAATTTAATTATAGAGCAACCGTGTAGGTGCAAGCACAAGCAT
GCATGATGACTGATGACTTACATGCTTCTACGTGAAGCGGCCAAACACCGAGCTAGACAGCAACT
GTTCGCTTATCCCCCACCGTGTTGTTTCCTCGGGTATTGTCCAGA
Found at i:91919 original size:13 final size:13
Alignment explanation
Indices: 91901--91941 Score: 57
Period size: 13 Copynumber: 3.2 Consensus size: 13
91891 ATTGATCAGT
91901 CTACCACTCGTCA
1 CTACCACTCGTCA
*
91914 CTACCACTCG-CC
1 CTACCACTCGTCA
91926 CTTACCACTCGTCA
1 C-TACCACTCGTCA
91940 CT
1 CT
91942 CCATTCACCA
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
12 2 0.08
13 20 0.83
14 2 0.08
ACGTcount: A:0.20, C:0.49, G:0.07, T:0.24
Consensus pattern (13 bp):
CTACCACTCGTCA
Left flanking sequence: Indices 91401 -- 91900
GACACTCCACTCCGTAAAAGTTTAAATCGCATTCGGTAAAATAGGGTTAAGCTCGGCTTTGTGGT
ACGCGGACACCGCTGCGAGTGGTCGATCGAGCGCGTCCGAGTTATTTTTGTCAGCAGTGTCGGGA
CATACATTCACTTCTATAGACATTCCAGCCATCATTCTTTCTCCGGGGGGCACCGACGATTTCCC
CATTTGTCGCACAAGTGATTTTTCAAAGGCTGGCCGCAGTACAAGCAGTGGGTCTTGGGAAGCAT
AGCGAGGTGGTGGTGGTTACGGGAGGAGGCGGGGCATTTATAGTTGGCACACCGTCACGCGGGTT
GGATGGTGTGGTCTGCGAAACCCTTTGTACGCTGTTTTAGGTAGGTGCCAAGGGCCAGAGTACCT
GCGTAGTCTAGTCCAGACACATTCCCGCCGACGCTAATTATTATTGGACTTTGTTATCTTGTGCC
ATCTACGGTTTCTGATCTGCGGTGATCTTGAACTCATTGATCAGT
Right flanking sequence: Indices 91942 -- 92441
CCATTCACCACTCCACCCGTCTACTAACACTAGTCCGTTTAAAGTTCTCGTTTTCCACCCTTCCC
CACCACCCTACCCCACCACTCCACCCCGCCACACATGTTTCACATAGCTACATTCCCACCCACCT
AAATCTCGATCTAACCACCACTGACCACTGACTGCTTACCACTTGCCTCCAGCACTTTCCACTGA
CCACTACCACTTACTACTACCACTGACCACAACCACCACTGACCACTGCCACTGCCACTACCAAT
GCCACTACCAATACCACTACCACCACCACTACCACCACCACTACCACCACCACTACCACTGACAA
CCTTCTCCCTTCCACACTACTACCTCTCCTCCACCCTACTCTCTTTCTAACCGTAATTCATTACT
ATGTACATTACTCCAACCCGACAATATCCTCAAACAACTTCTGGCAGGGCACCGTAGCCTGCAAC
CGCAGACACAACAAAAACACCCCCAGCAACTTGCGGTGCAACAGG
Found at i:92012 original size:13 final size:13
Alignment explanation
Indices: 91996--92038 Score: 52
Period size: 13 Copynumber: 3.3 Consensus size: 13
91986 TTCTCGTTTT
*
91996 CCACCCTTCCCCA
1 CCACCCTACCCCA
92009 CCACCCTACCCCA
1 CCACCCTACCCCA
*
92022 CCACTCC-ACCCCG
1 CCAC-CCTACCCCA
92035 CCAC
1 CCAC
92039 ACATGTTTCA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
13 25 0.93
14 2 0.07
ACGTcount: A:0.19, C:0.70, G:0.02, T:0.09
Consensus pattern (13 bp):
CCACCCTACCCCA
Left flanking sequence: Indices 91496 -- 91995
GCGCGTCCGAGTTATTTTTGTCAGCAGTGTCGGGACATACATTCACTTCTATAGACATTCCAGCC
ATCATTCTTTCTCCGGGGGGCACCGACGATTTCCCCATTTGTCGCACAAGTGATTTTTCAAAGGC
TGGCCGCAGTACAAGCAGTGGGTCTTGGGAAGCATAGCGAGGTGGTGGTGGTTACGGGAGGAGGC
GGGGCATTTATAGTTGGCACACCGTCACGCGGGTTGGATGGTGTGGTCTGCGAAACCCTTTGTAC
GCTGTTTTAGGTAGGTGCCAAGGGCCAGAGTACCTGCGTAGTCTAGTCCAGACACATTCCCGCCG
ACGCTAATTATTATTGGACTTTGTTATCTTGTGCCATCTACGGTTTCTGATCTGCGGTGATCTTG
AACTCATTGATCAGTCTACCACTCGTCACTACCACTCGCCCTTACCACTCGTCACTCCATTCACC
ACTCCACCCGTCTACTAACACTAGTCCGTTTAAAGTTCTCGTTTT
Right flanking sequence: Indices 92039 -- 92538
ACATGTTTCACATAGCTACATTCCCACCCACCTAAATCTCGATCTAACCACCACTGACCACTGAC
TGCTTACCACTTGCCTCCAGCACTTTCCACTGACCACTACCACTTACTACTACCACTGACCACAA
CCACCACTGACCACTGCCACTGCCACTACCAATGCCACTACCAATACCACTACCACCACCACTAC
CACCACCACTACCACCACCACTACCACTGACAACCTTCTCCCTTCCACACTACTACCTCTCCTCC
ACCCTACTCTCTTTCTAACCGTAATTCATTACTATGTACATTACTCCAACCCGACAATATCCTCA
AACAACTTCTGGCAGGGCACCGTAGCCTGCAACCGCAGACACAACAAAAACACCCCCAGCAACTT
GCGGTGCAACAGGTAGGTCTCCTCCGGCGGGGGGGTCAACCGCTCGTTGAGCATGACCCCGATGT
TGCCCCTGACCCGGTCGGTGATCGTCTGCAGTCTAAAGTCAAACG
Found at i:92147 original size:6 final size:6
Alignment explanation
Indices: 92130--92261 Score: 117
Period size: 6 Copynumber: 21.8 Consensus size: 6
92120 CCAGCACTTT
* *
92130 CCACTGA CCACTA CCACTTA CTACTA CCACTGA CCAC-A --ACCA CCACTGA
1 CCACT-A CCACTA CCAC-TA CCACTA CCACT-A CCACTA CCACTA CCACT-A
* * * * * *
92179 CCACTG CCACTG CCACTA CCAATG CCACTA CCAATA CCACTA CCACCA
1 CCACTA CCACTA CCACTA CCACTA CCACTA CCACTA CCACTA CCACTA
* *
92227 CCACTA CCACCA CCACTA CCACCA CCACTA CCACT
1 CCACTA CCACTA CCACTA CCACTA CCACTA CCACT
92262 GACAACCTTC
Statistics
Matches: 102, Mismatches: 17, Indels: 13
0.77 0.13 0.10
Matches are distributed among these distances:
3 2 0.02
4 1 0.01
5 1 0.01
6 77 0.75
7 21 0.21
ACGTcount: A:0.32, C:0.49, G:0.05, T:0.14
Consensus pattern (6 bp):
CCACTA
Left flanking sequence: Indices 91630 -- 92129
CGCAGTACAAGCAGTGGGTCTTGGGAAGCATAGCGAGGTGGTGGTGGTTACGGGAGGAGGCGGGG
CATTTATAGTTGGCACACCGTCACGCGGGTTGGATGGTGTGGTCTGCGAAACCCTTTGTACGCTG
TTTTAGGTAGGTGCCAAGGGCCAGAGTACCTGCGTAGTCTAGTCCAGACACATTCCCGCCGACGC
TAATTATTATTGGACTTTGTTATCTTGTGCCATCTACGGTTTCTGATCTGCGGTGATCTTGAACT
CATTGATCAGTCTACCACTCGTCACTACCACTCGCCCTTACCACTCGTCACTCCATTCACCACTC
CACCCGTCTACTAACACTAGTCCGTTTAAAGTTCTCGTTTTCCACCCTTCCCCACCACCCTACCC
CACCACTCCACCCCGCCACACATGTTTCACATAGCTACATTCCCACCCACCTAAATCTCGATCTA
ACCACCACTGACCACTGACTGCTTACCACTTGCCTCCAGCACTTT
Right flanking sequence: Indices 92262 -- 92761
GACAACCTTCTCCCTTCCACACTACTACCTCTCCTCCACCCTACTCTCTTTCTAACCGTAATTCA
TTACTATGTACATTACTCCAACCCGACAATATCCTCAAACAACTTCTGGCAGGGCACCGTAGCCT
GCAACCGCAGACACAACAAAAACACCCCCAGCAACTTGCGGTGCAACAGGTAGGTCTCCTCCGGC
GGGGGGGTCAACCGCTCGTTGAGCATGACCCCGATGTTGCCCCTGACCCGGTCGGTGATCGTCTG
CAGTCTAAAGTCAAACGCCTGCCCATGGTTGTCGACGGGCGAGAACGCCTCTCCCAACACCATCA
CCAGGTCGACGTGGCACGCCGTCATCGCCGGCAGCTCCAACCCGGTCAAGAATCCGAGCCGCACC
AGCAACCGCTCGACCTCCTTGCGGTCCTTTTTGACGGCAGCACGCAACACCCGGATGTAGTCCTC
GACAAACGCGTCGCCAAAGTCGCGGGCAGCACCAAAGTCAAGCAA
Found at i:92228 original size:3 final size:3
Alignment explanation
Indices: 92214--92260 Score: 58
Period size: 3 Copynumber: 15.7 Consensus size: 3
92204 CACTACCAAT
* * * *
92214 ACC ACT ACC ACC ACC ACT ACC ACC ACC ACT ACC ACC ACC ACT ACC AC
1 ACC ACC ACC ACC ACC ACC ACC ACC ACC ACC ACC ACC ACC ACC ACC AC
92261 TGACAACCTT
Statistics
Matches: 36, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.34, C:0.57, G:0.00, T:0.09
Consensus pattern (3 bp):
ACC
Left flanking sequence: Indices 91714 -- 92213
GTCACGCGGGTTGGATGGTGTGGTCTGCGAAACCCTTTGTACGCTGTTTTAGGTAGGTGCCAAGG
GCCAGAGTACCTGCGTAGTCTAGTCCAGACACATTCCCGCCGACGCTAATTATTATTGGACTTTG
TTATCTTGTGCCATCTACGGTTTCTGATCTGCGGTGATCTTGAACTCATTGATCAGTCTACCACT
CGTCACTACCACTCGCCCTTACCACTCGTCACTCCATTCACCACTCCACCCGTCTACTAACACTA
GTCCGTTTAAAGTTCTCGTTTTCCACCCTTCCCCACCACCCTACCCCACCACTCCACCCCGCCAC
ACATGTTTCACATAGCTACATTCCCACCCACCTAAATCTCGATCTAACCACCACTGACCACTGAC
TGCTTACCACTTGCCTCCAGCACTTTCCACTGACCACTACCACTTACTACTACCACTGACCACAA
CCACCACTGACCACTGCCACTGCCACTACCAATGCCACTACCAAT
Right flanking sequence: Indices 92261 -- 92760
TGACAACCTTCTCCCTTCCACACTACTACCTCTCCTCCACCCTACTCTCTTTCTAACCGTAATTC
ATTACTATGTACATTACTCCAACCCGACAATATCCTCAAACAACTTCTGGCAGGGCACCGTAGCC
TGCAACCGCAGACACAACAAAAACACCCCCAGCAACTTGCGGTGCAACAGGTAGGTCTCCTCCGG
CGGGGGGGTCAACCGCTCGTTGAGCATGACCCCGATGTTGCCCCTGACCCGGTCGGTGATCGTCT
GCAGTCTAAAGTCAAACGCCTGCCCATGGTTGTCGACGGGCGAGAACGCCTCTCCCAACACCATC
ACCAGGTCGACGTGGCACGCCGTCATCGCCGGCAGCTCCAACCCGGTCAAGAATCCGAGCCGCAC
CAGCAACCGCTCGACCTCCTTGCGGTCCTTTTTGACGGCAGCACGCAACACCCGGATGTAGTCCT
CGACAAACGCGTCGCCAAAGTCGCGGGCAGCACCAAAGTCAAGCA
Found at i:94416 original size:20 final size:19
Alignment explanation
Indices: 94382--94424 Score: 68
Period size: 20 Copynumber: 2.2 Consensus size: 19
94372 GATGGTGGCT
*
94382 GTAGGTGGTGCTGTAGATG
1 GTAGATGGTGCTGTAGATG
94401 GTAGATGGTGGCTGTAGATG
1 GTAGATGGT-GCTGTAGATG
94421 GTAG
1 GTAG
94425 GTAGATACGG
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
19 8 0.36
20 14 0.64
ACGTcount: A:0.19, C:0.05, G:0.47, T:0.30
Consensus pattern (19 bp):
GTAGATGGTGCTGTAGATG
Left flanking sequence: Indices 93882 -- 94381
CGGAGCGCCGCTGCGGTGTCACGGCACAAGTGCTGGGCACTGCGTTCGGCCACCAGCTGCACCAG
CTGGGCGATGGCCACCGCCTCGTACAACTTGGACATCGATACTGTGGTTGGCGTCGCTTGCTCTA
ATTTTCACCTTTGGGGTCGCGGGCTCAAACGGTCCTGCATGGGGCCGCATCGGTCGCCCGCTGAG
CCGAGGCGGGCACGGCCGACGCGTGGGACGTGGAGGGGACGTGGTGGGTGTGTGGGGGTGCGGGG
GTGGTGGTTTGGGGGTGGTGGTGGTGATGGTGGGTGGTAGGCGGCAAAACTCGGGTGGTTGCCAG
GGACCGGGTGGGGTACCGAGTGGGGTCCAACCGTTGGACGGTGTGCATGTGGACAGGGCCATCCT
TCGGTGCGCCAGCTCCGCCCCTGAGTCGGTTGCTATTACGAGTAGCAGTAGAGCGGGTAAACGGG
AGGGAGCGTGGGTAGCTGGGTGCGTGGTGGCTGTAGATGGTGGCT
Right flanking sequence: Indices 94425 -- 94924
GTAGATACGGACTAGTTACATGGAGAGGGAATACGATTGGAAGGGCTGGGAAGGCAGATATACGT
CTGTACCGCGTGGACACTTGTCTCACAATGTGATCGCCCGATCGAAGGCAAAAGCCGGAGCAATT
AACGGTTTCCCGGCCGCACGTGAAGCGGCCCGAGGACGTGACTGTGGTGGGAGCGGAGGTTAGGG
TTATAACCTGGAACAATAGGAGCCCACGGGGTGGCAGCAGACACACGGTATGAGTGTGGGCAGTC
CCCCAAAGCGGGCGGAAACTGCCCACATCCCCAGCTGGCGAGGTTTCCCGATGGCTCACGTGGTC
CCGTCCGCTCGGGTTTTGTGGTCGCGCCTACGCCAGGGGCGGCCGAAACAGGCAACTTGACACGG
AGTTATGCGACCATTCAGGTACCCTGTTTGTTGTGCCACGCAGACACCAGGGGAGCCCCAGTGAT
GTCAGAGGCACCAGGTTCCATTGCATGGGCCCGCGACACGCGCCA
Found at i:94422 original size:13 final size:13
Alignment explanation
Indices: 94361--94402 Score: 68
Period size: 13 Copynumber: 3.3 Consensus size: 13
94351 GCTGGGTGCG
94361 TGGTGGCTGTAGA
1 TGGTGGCTGTAGA
*
94374 TGGTGGCTGTAGG
1 TGGTGGCTGTAGA
94387 TGGT-GCTGTAGA
1 TGGTGGCTGTAGA
94399 TGGT
1 TGGT
94403 AGATGGTGGC
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
12 11 0.41
13 16 0.59
ACGTcount: A:0.12, C:0.07, G:0.48, T:0.33
Consensus pattern (13 bp):
TGGTGGCTGTAGA
Left flanking sequence: Indices 93861 -- 94360
CACGCCGCGGGCGCCAGCCCCCGGAGCGCCGCTGCGGTGTCACGGCACAAGTGCTGGGCACTGCG
TTCGGCCACCAGCTGCACCAGCTGGGCGATGGCCACCGCCTCGTACAACTTGGACATCGATACTG
TGGTTGGCGTCGCTTGCTCTAATTTTCACCTTTGGGGTCGCGGGCTCAAACGGTCCTGCATGGGG
CCGCATCGGTCGCCCGCTGAGCCGAGGCGGGCACGGCCGACGCGTGGGACGTGGAGGGGACGTGG
TGGGTGTGTGGGGGTGCGGGGGTGGTGGTTTGGGGGTGGTGGTGGTGATGGTGGGTGGTAGGCGG
CAAAACTCGGGTGGTTGCCAGGGACCGGGTGGGGTACCGAGTGGGGTCCAACCGTTGGACGGTGT
GCATGTGGACAGGGCCATCCTTCGGTGCGCCAGCTCCGCCCCTGAGTCGGTTGCTATTACGAGTA
GCAGTAGAGCGGGTAAACGGGAGGGAGCGTGGGTAGCTGGGTGCG
Right flanking sequence: Indices 94403 -- 94902
AGATGGTGGCTGTAGATGGTAGGTAGATACGGACTAGTTACATGGAGAGGGAATACGATTGGAAG
GGCTGGGAAGGCAGATATACGTCTGTACCGCGTGGACACTTGTCTCACAATGTGATCGCCCGATC
GAAGGCAAAAGCCGGAGCAATTAACGGTTTCCCGGCCGCACGTGAAGCGGCCCGAGGACGTGACT
GTGGTGGGAGCGGAGGTTAGGGTTATAACCTGGAACAATAGGAGCCCACGGGGTGGCAGCAGACA
CACGGTATGAGTGTGGGCAGTCCCCCAAAGCGGGCGGAAACTGCCCACATCCCCAGCTGGCGAGG
TTTCCCGATGGCTCACGTGGTCCCGTCCGCTCGGGTTTTGTGGTCGCGCCTACGCCAGGGGCGGC
CGAAACAGGCAACTTGACACGGAGTTATGCGACCATTCAGGTACCCTGTTTGTTGTGCCACGCAG
ACACCAGGGGAGCCCCAGTGATGTCAGAGGCACCAGGTTCCATTG
Found at i:95749 original size:12 final size:11
Alignment explanation
Indices: 95728--95784 Score: 60
Period size: 12 Copynumber: 4.8 Consensus size: 11
95718 AGAAAGAAGA
95728 AACAAGAAAGCG
1 AACAAGAAAG-G
*
95740 AACTAGAAAGG
1 AACAAGAAAGG
95751 AATCAAGAAAGG
1 AA-CAAGAAAGG
*
95763 AAACGAGAAAGCG
1 -AACAAGAAAG-G
95776 AACAAGAAA
1 AACAAGAAA
95785 CCAATGAAAC
Statistics
Matches: 38, Mismatches: 4, Indels: 6
0.79 0.08 0.12
Matches are distributed among these distances:
11 3 0.08
12 32 0.84
13 3 0.08
ACGTcount: A:0.60, C:0.12, G:0.25, T:0.04
Consensus pattern (11 bp):
AACAAGAAAGG
Left flanking sequence: Indices 95228 -- 95727
ACTATCTTCCGTGACCATGGCAAGCACTTACTGCAGCCAAGACAAGCAAGGCAAGGCAGTCCAGC
CAAGCCCGGGTCAGCGGGCGCGCCAGCCACCGGTCAGCCGTGCCCAGCCTCCCGCCTGCGTCGCA
CAATACGATGGATCTAGACCGGGGGCTCAGCCCGTCAACGTACGTTCAAGCACTCCATGGTCTAA
TCTCGTATGCATGCATGTCCAGGTGACCAGTCACGTTGCTGGCGTCACGTTGCTCTCGTGTGACC
GACCCAGCCCGCGAGTGACGGTGCCCCTGCGTACCCCCGGTTCCATTGCCATGGCTACATGGCTT
CCGAGTGCTCTGTCGCGAGGCGCCCCGTGCCGACATCAGCCACTTTCGTAGAAAATATACCTGGT
GGCGCTCACGAGCCAAGCGAGAGAGCACAACTAGCCGAGCAATCTGAGATACGACGACAATTGTA
CAGGTACCATGCACTACAGTGGGCTGGCGAAGACGAGAAAGAAGA
Right flanking sequence: Indices 95785 -- 96284
CCAATGAAACGAAATCTACGAAGCAAGAGTACGAACCAAAAATAGGATCGAAAATGAGTCGAAAA
TGGATTTAAAAAATGGATCCAAATGATCCAGAATCAAACAACCGATAGAGCAAGAACTAAAGGAA
TCAGTAGAACCAACCAGTACAACCAACCAGTACAACAAACCAGTACAACAAACCAGTACACCAAA
CCAGTACAACCAAACCAAATCCCAAACACCTAAACCACCCCAAAAAGCACCTGAACATAGCCTAT
TGTAGCCGAGTAACCACTACAACTCGACCCAACAATATGCACCACTCGCCGTAACCGACACCACA
AACCAGCCCCAATTGCCACCCCACAACAGCCACAACCAGCCACAAACCCCCGCCGTCTCCTACCA
TCCCCCACTACCCACCACCACCCTCTCCCGTCCACCCCCCTTCCCTTCCACCCCTTTTCCTCCCT
GCCCACTCGCAACCACACCACCGTCCTACATAATGGGCCGATGCC
Found at i:95759 original size:24 final size:24
Alignment explanation
Indices: 95728--95784 Score: 73
Period size: 24 Copynumber: 2.4 Consensus size: 24
95718 AGAAAGAAGA
*
95728 AACAAGAAAGCG-AACTAGAAAG-G
1 AACAAGAAAG-GAAACGAGAAAGCG
95751 AATCAAGAAAGGAAACGAGAAAGCG
1 AA-CAAGAAAGGAAACGAGAAAGCG
95776 AACAAGAAA
1 AACAAGAAA
95785 CCAATGAAAC
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
23 3 0.10
24 24 0.80
25 3 0.10
ACGTcount: A:0.60, C:0.12, G:0.25, T:0.04
Consensus pattern (24 bp):
AACAAGAAAGGAAACGAGAAAGCG
Left flanking sequence: Indices 95228 -- 95727
ACTATCTTCCGTGACCATGGCAAGCACTTACTGCAGCCAAGACAAGCAAGGCAAGGCAGTCCAGC
CAAGCCCGGGTCAGCGGGCGCGCCAGCCACCGGTCAGCCGTGCCCAGCCTCCCGCCTGCGTCGCA
CAATACGATGGATCTAGACCGGGGGCTCAGCCCGTCAACGTACGTTCAAGCACTCCATGGTCTAA
TCTCGTATGCATGCATGTCCAGGTGACCAGTCACGTTGCTGGCGTCACGTTGCTCTCGTGTGACC
GACCCAGCCCGCGAGTGACGGTGCCCCTGCGTACCCCCGGTTCCATTGCCATGGCTACATGGCTT
CCGAGTGCTCTGTCGCGAGGCGCCCCGTGCCGACATCAGCCACTTTCGTAGAAAATATACCTGGT
GGCGCTCACGAGCCAAGCGAGAGAGCACAACTAGCCGAGCAATCTGAGATACGACGACAATTGTA
CAGGTACCATGCACTACAGTGGGCTGGCGAAGACGAGAAAGAAGA
Right flanking sequence: Indices 95785 -- 96284
CCAATGAAACGAAATCTACGAAGCAAGAGTACGAACCAAAAATAGGATCGAAAATGAGTCGAAAA
TGGATTTAAAAAATGGATCCAAATGATCCAGAATCAAACAACCGATAGAGCAAGAACTAAAGGAA
TCAGTAGAACCAACCAGTACAACCAACCAGTACAACAAACCAGTACAACAAACCAGTACACCAAA
CCAGTACAACCAAACCAAATCCCAAACACCTAAACCACCCCAAAAAGCACCTGAACATAGCCTAT
TGTAGCCGAGTAACCACTACAACTCGACCCAACAATATGCACCACTCGCCGTAACCGACACCACA
AACCAGCCCCAATTGCCACCCCACAACAGCCACAACCAGCCACAAACCCCCGCCGTCTCCTACCA
TCCCCCACTACCCACCACCACCCTCTCCCGTCCACCCCCCTTCCCTTCCACCCCTTTTCCTCCCT
GCCCACTCGCAACCACACCACCGTCCTACATAATGGGCCGATGCC
Found at i:95938 original size:13 final size:13
Alignment explanation
Indices: 95916--95992 Score: 111
Period size: 13 Copynumber: 5.9 Consensus size: 13
95906 CTAAAGGAAT
*
95916 CAGTAGAACCAAC
1 CAGTACAACCAAC
95929 CAGTACAACCAAC
1 CAGTACAACCAAC
*
95942 CAGTACAACAAAC
1 CAGTACAACCAAC
*
95955 CAGTACAACAAAC
1 CAGTACAACCAAC
95968 CAGTAC-ACCAAAC
1 CAGTACAACC-AAC
95981 CAGTACAACCAA
1 CAGTACAACCAA
95993 ACCAAATCCC
Statistics
Matches: 59, Mismatches: 3, Indels: 4
0.89 0.05 0.06
Matches are distributed among these distances:
12 2 0.03
13 54 0.92
14 3 0.05
ACGTcount: A:0.49, C:0.34, G:0.09, T:0.08
Consensus pattern (13 bp):
CAGTACAACCAAC
Left flanking sequence: Indices 95416 -- 95915
GGTCTAATCTCGTATGCATGCATGTCCAGGTGACCAGTCACGTTGCTGGCGTCACGTTGCTCTCG
TGTGACCGACCCAGCCCGCGAGTGACGGTGCCCCTGCGTACCCCCGGTTCCATTGCCATGGCTAC
ATGGCTTCCGAGTGCTCTGTCGCGAGGCGCCCCGTGCCGACATCAGCCACTTTCGTAGAAAATAT
ACCTGGTGGCGCTCACGAGCCAAGCGAGAGAGCACAACTAGCCGAGCAATCTGAGATACGACGAC
AATTGTACAGGTACCATGCACTACAGTGGGCTGGCGAAGACGAGAAAGAAGAAACAAGAAAGCGA
ACTAGAAAGGAATCAAGAAAGGAAACGAGAAAGCGAACAAGAAACCAATGAAACGAAATCTACGA
AGCAAGAGTACGAACCAAAAATAGGATCGAAAATGAGTCGAAAATGGATTTAAAAAATGGATCCA
AATGATCCAGAATCAAACAACCGATAGAGCAAGAACTAAAGGAAT
Right flanking sequence: Indices 95993 -- 96492
ACCAAATCCCAAACACCTAAACCACCCCAAAAAGCACCTGAACATAGCCTATTGTAGCCGAGTAA
CCACTACAACTCGACCCAACAATATGCACCACTCGCCGTAACCGACACCACAAACCAGCCCCAAT
TGCCACCCCACAACAGCCACAACCAGCCACAAACCCCCGCCGTCTCCTACCATCCCCCACTACCC
ACCACCACCCTCTCCCGTCCACCCCCCTTCCCTTCCACCCCTTTTCCTCCCTGCCCACTCGCAAC
CACACCACCGTCCTACATAATGGGCCGATGCCCGGCAATGACGTACCCCACTATTTTTAGAACAG
TAAACAAACAGAGCCGCGTCCACACGGACCGCCACCTGGAACCACCCGCCTAAACCTGCGTATAT
TACCCCTCCCGTCCCCCGTCCCGCACCCGCCGCCCGCGTTTGTCCCTGCTCGCCTCCTCGCACCG
TGCCCTGTTCCGAGCCAGCCTCCTATTATTTTTCACATCATGGAA
Found at i:96224 original size:16 final size:17
Alignment explanation
Indices: 96189--96228 Score: 55
Period size: 16 Copynumber: 2.4 Consensus size: 17
96179 CCACTACCCA
*
96189 CCACCACCCTCTCCCGT
1 CCACCCCCCTCTCCCGT
*
96206 CCACCCCCCT-TCCCTT
1 CCACCCCCCTCTCCCGT
96222 CCACCCC
1 CCACCCC
96229 TTTTCCTCCC
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
16 12 0.57
17 9 0.43
ACGTcount: A:0.10, C:0.70, G:0.03, T:0.17
Consensus pattern (17 bp):
CCACCCCCCTCTCCCGT
Left flanking sequence: Indices 95689 -- 96188
CCATGCACTACAGTGGGCTGGCGAAGACGAGAAAGAAGAAACAAGAAAGCGAACTAGAAAGGAAT
CAAGAAAGGAAACGAGAAAGCGAACAAGAAACCAATGAAACGAAATCTACGAAGCAAGAGTACGA
ACCAAAAATAGGATCGAAAATGAGTCGAAAATGGATTTAAAAAATGGATCCAAATGATCCAGAAT
CAAACAACCGATAGAGCAAGAACTAAAGGAATCAGTAGAACCAACCAGTACAACCAACCAGTACA
ACAAACCAGTACAACAAACCAGTACACCAAACCAGTACAACCAAACCAAATCCCAAACACCTAAA
CCACCCCAAAAAGCACCTGAACATAGCCTATTGTAGCCGAGTAACCACTACAACTCGACCCAACA
ATATGCACCACTCGCCGTAACCGACACCACAAACCAGCCCCAATTGCCACCCCACAACAGCCACA
ACCAGCCACAAACCCCCGCCGTCTCCTACCATCCCCCACTACCCA
Right flanking sequence: Indices 96229 -- 96728
TTTTCCTCCCTGCCCACTCGCAACCACACCACCGTCCTACATAATGGGCCGATGCCCGGCAATGA
CGTACCCCACTATTTTTAGAACAGTAAACAAACAGAGCCGCGTCCACACGGACCGCCACCTGGAA
CCACCCGCCTAAACCTGCGTATATTACCCCTCCCGTCCCCCGTCCCGCACCCGCCGCCCGCGTTT
GTCCCTGCTCGCCTCCTCGCACCGTGCCCTGTTCCGAGCCAGCCTCCTATTATTTTTCACATCAT
GGAATGCATCCAAGTCGCACTGGCCGCAGCGGGCAATCGCAATCTGCTCCTCCCCGTGGACCACT
TCCCCTACCGCTACGCACGCTTGCCTGCCTGTTACGAGACCGTATCTGGCTGTGTCCCCCCAATG
CTGTCTGCCAATCCCTACGAGCGCGCCAAACGCCGCAGTTTGGCCGCGGCACTGCTGATCACGGC
CCTGGCGTACGACGACCAGGCCCCCCAGTTTGAGCCCACGGTGGG
Found at i:97108 original size:9 final size:9
Alignment explanation
Indices: 97089--97120 Score: 55
Period size: 9 Copynumber: 3.4 Consensus size: 9
97079 GGTTCTCGCG
97089 GGCGTCCACC
1 GGCG-CCACC
97099 GGCGCCACC
1 GGCGCCACC
97108 GGCGCCACC
1 GGCGCCACC
97117 GGCG
1 GGCG
97121 TGTCGATGGG
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
9 18 0.82
10 4 0.18
ACGTcount: A:0.09, C:0.50, G:0.38, T:0.03
Consensus pattern (9 bp):
GGCGCCACC
Left flanking sequence: Indices 96589 -- 97088
GAGACCGTATCTGGCTGTGTCCCCCCAATGCTGTCTGCCAATCCCTACGAGCGCGCCAAACGCCG
CAGTTTGGCCGCGGCACTGCTGATCACGGCCCTGGCGTACGACGACCAGGCCCCCCAGTTTGAGC
CCACGGTGGGAGCGTATCCCGAGCTGGCGAGCCCGCTGGCGAAACTCGACCCCCCGGCCGTCACC
CTGCCGCTGCGGCTCGACCCCCGTGGCGCCAACGGGGCCTACGGCTCGTCACCGCGGCTCGGAAG
CCTGCCCGGCCACCGCTACGACCGCCTGCCCAACTTGGCGCCCCCGAGCCCCTACCTGCGCGAGC
CGGTGAGCCCCCAGCGCCAGCTGTACCCCGCCAGCCCGCACAAGTCCAACTACCTGAACCCCTAC
GCGCTGCCCGGCCGGGCCAGCCCCTACGCCACCGCCAACGGGCTGAGGCAGCTGCACGCCAGTCT
CGCTGACGAGCACAGCCCCTACCAGGCCCAGCTGGGGTTCTCGCG
Right flanking sequence: Indices 97121 -- 97620
TGTCGATGGGCCCGCAGGAGTACCGGTTGCACGAGCCCGAGCCGTTCCCGAGCGTGGGGGCGGGC
GACGCCTACGACCGCCGCAGCTACGACCACCAGCGCACGGCTCTGCACGAGCGCAGTCCCTACGA
CCGCGCCAGCGGGTTCCAGAGCTACCTGGACCGCCGCACGCTGACCGACCACTCGCGGGGCCCGC
TGGGCGACTACCGTGCGTCGATGGACCACAAACGCGGCCTCCTGGGCGACTTCCGCGGCTCTGCT
GACCACCAGCGAGGCTCTCTGGGCGACTTCCGCGGCTCTGACCACCAGCGTTCTCTGAGCGACTT
CCGCTCGGCCGACCACAAACGGGCGCCGCTGGACCCCCGCGGGCACAGCCGCACGGGCTCGCAGC
TCGACGTGGCGAACCCCTACGCACAGCCCACCGCCCGCTCGCCCTACGGGTCGCAGCCGCCGCTG
GCCCGCGGCCTGGCGGTGTTCAACCCGCAGACCCCGCGCGCGCTG
Found at i:97385 original size:42 final size:42
Alignment explanation
Indices: 97339--97420 Score: 121
Period size: 42 Copynumber: 2.0 Consensus size: 42
97329 TGCGTCGATG
*
97339 GACCACAAACGCGGC-CTCCTGGGCGACTTCCGCGGCTCTGCT
1 GACCACAAACGAGGCTCT-CTGGGCGACTTCCGCGGCTCTGCT
* *
97381 GACCACCAGCGAGGCTCTCTGGGCGACTTCCGCGGCTCTG
1 GACCACAAACGAGGCTCTCTGGGCGACTTCCGCGGCTCTG
97421 ACCACCAGCG
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
42 34 0.94
43 2 0.06
ACGTcount: A:0.13, C:0.39, G:0.30, T:0.17
Consensus pattern (42 bp):
GACCACAAACGAGGCTCTCTGGGCGACTTCCGCGGCTCTGCT
Left flanking sequence: Indices 96839 -- 97338
GGCTCGGAAGCCTGCCCGGCCACCGCTACGACCGCCTGCCCAACTTGGCGCCCCCGAGCCCCTAC
CTGCGCGAGCCGGTGAGCCCCCAGCGCCAGCTGTACCCCGCCAGCCCGCACAAGTCCAACTACCT
GAACCCCTACGCGCTGCCCGGCCGGGCCAGCCCCTACGCCACCGCCAACGGGCTGAGGCAGCTGC
ACGCCAGTCTCGCTGACGAGCACAGCCCCTACCAGGCCCAGCTGGGGTTCTCGCGGGCGTCCACC
GGCGCCACCGGCGCCACCGGCGTGTCGATGGGCCCGCAGGAGTACCGGTTGCACGAGCCCGAGCC
GTTCCCGAGCGTGGGGGCGGGCGACGCCTACGACCGCCGCAGCTACGACCACCAGCGCACGGCTC
TGCACGAGCGCAGTCCCTACGACCGCGCCAGCGGGTTCCAGAGCTACCTGGACCGCCGCACGCTG
ACCGACCACTCGCGGGGCCCGCTGGGCGACTACCGTGCGTCGATG
Right flanking sequence: Indices 97421 -- 97920
ACCACCAGCGTTCTCTGAGCGACTTCCGCTCGGCCGACCACAAACGGGCGCCGCTGGACCCCCGC
GGGCACAGCCGCACGGGCTCGCAGCTCGACGTGGCGAACCCCTACGCACAGCCCACCGCCCGCTC
GCCCTACGGGTCGCAGCCGCCGCTGGCCCGCGGCCTGGCGGTGTTCAACCCGCAGACCCCGCGCG
CGCTGGTGCTCTTGGACACCCCGCTGCTCCAGAACCCGTACGCCACGCCCACGGCGAAGCTGCCG
CTGAAGCTGCCGCTCAAGCCCGCGGGCGGGGCCCACGACTCGCTCGACCCGCCGTCCGCCGAGCC
GGAGGCAGTGCTGCCCGTGCCCAACCGTGCCCAGGTCAAGCGCTCCAGCTACAACCCCTACGACA
AGCTGCCCAACCCGTACGAGCGCGCGTCCGCCAAGGCGCAGCCGAGCCACAACGAGACCAAGCTG
ATGCTTGCGCCCACGTCGATGCTCGATCCGGTGGGCCCGTCCAAG
Found at i:97417 original size:21 final size:22
Alignment explanation
Indices: 97348--97419 Score: 60
Period size: 21 Copynumber: 3.4 Consensus size: 22
97338 GGACCACAAA
97348 CGCGGC-CTCCTGGGCGACTTC
1 CGCGGCTCTCCTGGGCGACTTC
* * * ***
97369 CGCGGCTCTGCT-GACCACCAG
1 CGCGGCTCTCCTGGGCGACTTC
*
97390 CGAGGCTCT-CTGGGCGACTTC
1 CGCGGCTCTCCTGGGCGACTTC
97411 CGCGGCTCT
1 CGCGGCTCT
97420 GACCACCAGC
Statistics
Matches: 36, Mismatches: 13, Indels: 4
0.68 0.25 0.08
Matches are distributed among these distances:
20 2 0.06
21 30 0.83
22 4 0.11
ACGTcount: A:0.08, C:0.40, G:0.32, T:0.19
Consensus pattern (22 bp):
CGCGGCTCTCCTGGGCGACTTC
Left flanking sequence: Indices 96848 -- 97347
GCCTGCCCGGCCACCGCTACGACCGCCTGCCCAACTTGGCGCCCCCGAGCCCCTACCTGCGCGAG
CCGGTGAGCCCCCAGCGCCAGCTGTACCCCGCCAGCCCGCACAAGTCCAACTACCTGAACCCCTA
CGCGCTGCCCGGCCGGGCCAGCCCCTACGCCACCGCCAACGGGCTGAGGCAGCTGCACGCCAGTC
TCGCTGACGAGCACAGCCCCTACCAGGCCCAGCTGGGGTTCTCGCGGGCGTCCACCGGCGCCACC
GGCGCCACCGGCGTGTCGATGGGCCCGCAGGAGTACCGGTTGCACGAGCCCGAGCCGTTCCCGAG
CGTGGGGGCGGGCGACGCCTACGACCGCCGCAGCTACGACCACCAGCGCACGGCTCTGCACGAGC
GCAGTCCCTACGACCGCGCCAGCGGGTTCCAGAGCTACCTGGACCGCCGCACGCTGACCGACCAC
TCGCGGGGCCCGCTGGGCGACTACCGTGCGTCGATGGACCACAAA
Right flanking sequence: Indices 97420 -- 97919
GACCACCAGCGTTCTCTGAGCGACTTCCGCTCGGCCGACCACAAACGGGCGCCGCTGGACCCCCG
CGGGCACAGCCGCACGGGCTCGCAGCTCGACGTGGCGAACCCCTACGCACAGCCCACCGCCCGCT
CGCCCTACGGGTCGCAGCCGCCGCTGGCCCGCGGCCTGGCGGTGTTCAACCCGCAGACCCCGCGC
GCGCTGGTGCTCTTGGACACCCCGCTGCTCCAGAACCCGTACGCCACGCCCACGGCGAAGCTGCC
GCTGAAGCTGCCGCTCAAGCCCGCGGGCGGGGCCCACGACTCGCTCGACCCGCCGTCCGCCGAGC
CGGAGGCAGTGCTGCCCGTGCCCAACCGTGCCCAGGTCAAGCGCTCCAGCTACAACCCCTACGAC
AAGCTGCCCAACCCGTACGAGCGCGCGTCCGCCAAGGCGCAGCCGAGCCACAACGAGACCAAGCT
GATGCTTGCGCCCACGTCGATGCTCGATCCGGTGGGCCCGTCCAA
Found at i:97443 original size:36 final size:39
Alignment explanation
Indices: 97361--97449 Score: 112
Period size: 36 Copynumber: 2.3 Consensus size: 39
97351 GGCCTCCTGG
*
97361 GCGACTTCCGCGGCTCTGCTGACCACCAGCGAGGCTCTCTGG
1 GCGACTTCCGCGGC-CTGCTGACCACCAGC--GGCTCTCTGA
*
97403 GCGACTTCCGCGG-CT-CTGACCACCAGC-GTTCTCTGA
1 GCGACTTCCGCGGCCTGCTGACCACCAGCGGCTCTCTGA
97439 GCGACTTCCGC
1 GCGACTTCCGC
97450 TCGGCCGACC
Statistics
Matches: 45, Mismatches: 2, Indels: 6
0.85 0.04 0.11
Matches are distributed among these distances:
36 18 0.40
39 12 0.27
40 2 0.04
42 13 0.29
ACGTcount: A:0.12, C:0.39, G:0.28, T:0.20
Consensus pattern (39 bp):
GCGACTTCCGCGGCCTGCTGACCACCAGCGGCTCTCTGA
Left flanking sequence: Indices 96861 -- 97360
CCGCTACGACCGCCTGCCCAACTTGGCGCCCCCGAGCCCCTACCTGCGCGAGCCGGTGAGCCCCC
AGCGCCAGCTGTACCCCGCCAGCCCGCACAAGTCCAACTACCTGAACCCCTACGCGCTGCCCGGC
CGGGCCAGCCCCTACGCCACCGCCAACGGGCTGAGGCAGCTGCACGCCAGTCTCGCTGACGAGCA
CAGCCCCTACCAGGCCCAGCTGGGGTTCTCGCGGGCGTCCACCGGCGCCACCGGCGCCACCGGCG
TGTCGATGGGCCCGCAGGAGTACCGGTTGCACGAGCCCGAGCCGTTCCCGAGCGTGGGGGCGGGC
GACGCCTACGACCGCCGCAGCTACGACCACCAGCGCACGGCTCTGCACGAGCGCAGTCCCTACGA
CCGCGCCAGCGGGTTCCAGAGCTACCTGGACCGCCGCACGCTGACCGACCACTCGCGGGGCCCGC
TGGGCGACTACCGTGCGTCGATGGACCACAAACGCGGCCTCCTGG
Right flanking sequence: Indices 97450 -- 97949
TCGGCCGACCACAAACGGGCGCCGCTGGACCCCCGCGGGCACAGCCGCACGGGCTCGCAGCTCGA
CGTGGCGAACCCCTACGCACAGCCCACCGCCCGCTCGCCCTACGGGTCGCAGCCGCCGCTGGCCC
GCGGCCTGGCGGTGTTCAACCCGCAGACCCCGCGCGCGCTGGTGCTCTTGGACACCCCGCTGCTC
CAGAACCCGTACGCCACGCCCACGGCGAAGCTGCCGCTGAAGCTGCCGCTCAAGCCCGCGGGCGG
GGCCCACGACTCGCTCGACCCGCCGTCCGCCGAGCCGGAGGCAGTGCTGCCCGTGCCCAACCGTG
CCCAGGTCAAGCGCTCCAGCTACAACCCCTACGACAAGCTGCCCAACCCGTACGAGCGCGCGTCC
GCCAAGGCGCAGCCGAGCCACAACGAGACCAAGCTGATGCTTGCGCCCACGTCGATGCTCGATCC
GGTGGGCCCGTCCAAGGGGTCGCCCAAGGCCAGTCCGAGTCCGAA
Found at i:97987 original size:12 final size:12
Alignment explanation
Indices: 97970--98006 Score: 56
Period size: 12 Copynumber: 3.1 Consensus size: 12
97960 TCGTCCAGAG
*
97970 CGCTGGCTAACC
1 CGCTGGCCAACC
97982 CGCTGGCCAACC
1 CGCTGGCCAACC
*
97994 CGCTGGCGAACC
1 CGCTGGCCAACC
98006 C
1 C
98007 CTACGGCTCG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.16, C:0.46, G:0.27, T:0.11
Consensus pattern (12 bp):
CGCTGGCCAACC
Left flanking sequence: Indices 97470 -- 97969
GCCGCTGGACCCCCGCGGGCACAGCCGCACGGGCTCGCAGCTCGACGTGGCGAACCCCTACGCAC
AGCCCACCGCCCGCTCGCCCTACGGGTCGCAGCCGCCGCTGGCCCGCGGCCTGGCGGTGTTCAAC
CCGCAGACCCCGCGCGCGCTGGTGCTCTTGGACACCCCGCTGCTCCAGAACCCGTACGCCACGCC
CACGGCGAAGCTGCCGCTGAAGCTGCCGCTCAAGCCCGCGGGCGGGGCCCACGACTCGCTCGACC
CGCCGTCCGCCGAGCCGGAGGCAGTGCTGCCCGTGCCCAACCGTGCCCAGGTCAAGCGCTCCAGC
TACAACCCCTACGACAAGCTGCCCAACCCGTACGAGCGCGCGTCCGCCAAGGCGCAGCCGAGCCA
CAACGAGACCAAGCTGATGCTTGCGCCCACGTCGATGCTCGATCCGGTGGGCCCGTCCAAGGGGT
CGCCCAAGGCCAGTCCGAGTCCGAAGGTTGGCCAGTCGTCCAGAG
Right flanking sequence: Indices 98007 -- 98506
CTACGGCTCGCTGGCCAACCTCAACTCGCTGGCCAACCCCAAATCGCTGGCCAACCTCGCGCTGA
CCAGCCACAACGCCAACCCCTACAACTCGCCGCTGGCCCGCACGCTGGCCAACCCCGTGCCCACG
AAAAAGAGCATTCCCCAGCACCGCCAGGGACTCGCCGACTTCGAAACCACCCCCGGCAAACCGCG
GATCATCATCAACGCGGACCCGGTGATCCCCAACTACCCGTTGCTGCCGCAGGTGAAGAAGCACG
CCAACTACAACATGAAGGTGGTGGTGGTGGGCGACGGCGGGTGCGGCAAAACGTGCTTGCTCGTG
CTGTACGCGCAGCAGGAGTTCCCCGAGGTGTACGTGCCCACGGTGTTTGAGAACTACGTCACCAA
CGTGATTGCGCCCAACAACAAGGTGATCGAGTTGGCGCTCTGGGACACCGCGGGCCAGGAGGAGT
ACGACCGGTTGCGCCCGTTGCTGTACCCCAACGTGGACGTGTTGC
Found at i:98036 original size:18 final size:18
Alignment explanation
Indices: 98013--98064 Score: 86
Period size: 18 Copynumber: 2.9 Consensus size: 18
98003 ACCCCTACGG
98013 CTCGCTGGCCAACCTCAA
1 CTCGCTGGCCAACCTCAA
*
98031 CTCGCTGGCCAACCCCAA
1 CTCGCTGGCCAACCTCAA
*
98049 ATCGCTGGCCAACCTC
1 CTCGCTGGCCAACCTC
98065 GCGCTGACCA
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 31 1.00
ACGTcount: A:0.21, C:0.46, G:0.17, T:0.15
Consensus pattern (18 bp):
CTCGCTGGCCAACCTCAA
Left flanking sequence: Indices 97513 -- 98012
GACGTGGCGAACCCCTACGCACAGCCCACCGCCCGCTCGCCCTACGGGTCGCAGCCGCCGCTGGC
CCGCGGCCTGGCGGTGTTCAACCCGCAGACCCCGCGCGCGCTGGTGCTCTTGGACACCCCGCTGC
TCCAGAACCCGTACGCCACGCCCACGGCGAAGCTGCCGCTGAAGCTGCCGCTCAAGCCCGCGGGC
GGGGCCCACGACTCGCTCGACCCGCCGTCCGCCGAGCCGGAGGCAGTGCTGCCCGTGCCCAACCG
TGCCCAGGTCAAGCGCTCCAGCTACAACCCCTACGACAAGCTGCCCAACCCGTACGAGCGCGCGT
CCGCCAAGGCGCAGCCGAGCCACAACGAGACCAAGCTGATGCTTGCGCCCACGTCGATGCTCGAT
CCGGTGGGCCCGTCCAAGGGGTCGCCCAAGGCCAGTCCGAGTCCGAAGGTTGGCCAGTCGTCCAG
AGCGCTGGCTAACCCGCTGGCCAACCCGCTGGCGAACCCCTACGG
Right flanking sequence: Indices 98065 -- 98564
GCGCTGACCAGCCACAACGCCAACCCCTACAACTCGCCGCTGGCCCGCACGCTGGCCAACCCCGT
GCCCACGAAAAAGAGCATTCCCCAGCACCGCCAGGGACTCGCCGACTTCGAAACCACCCCCGGCA
AACCGCGGATCATCATCAACGCGGACCCGGTGATCCCCAACTACCCGTTGCTGCCGCAGGTGAAG
AAGCACGCCAACTACAACATGAAGGTGGTGGTGGTGGGCGACGGCGGGTGCGGCAAAACGTGCTT
GCTCGTGCTGTACGCGCAGCAGGAGTTCCCCGAGGTGTACGTGCCCACGGTGTTTGAGAACTACG
TCACCAACGTGATTGCGCCCAACAACAAGGTGATCGAGTTGGCGCTCTGGGACACCGCGGGCCAG
GAGGAGTACGACCGGTTGCGCCCGTTGCTGTACCCCAACGTGGACGTGTTGCTCGTGTGCTTCTC
GCTCGAGCTGGTGGTGTCGCTCCAGAACGTCAAGGACACCTGGTT
Found at i:110946 original size:28 final size:28
Alignment explanation
Indices: 110906--110975 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
110896 ACTACTAGCG
*
110906 CAGTGCTCGTACTGTACCCGTTCTGGGC
1 CAGTGCTCGTACTCTACCCGTTCTGGGC
*
110934 CAGTGCTCGTACTCTACCCGTTCTGGTC
1 CAGTGCTCGTACTCTACCCGTTCTGGGC
110962 CAGTGCTCGTACTC
1 CAGTGCTCGTACTC
110976 CCATTTCTCG
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
28 40 1.00
ACGTcount: A:0.11, C:0.34, G:0.24, T:0.30
Consensus pattern (28 bp):
CAGTGCTCGTACTCTACCCGTTCTGGGC
Left flanking sequence: Indices 110406 -- 110905
GCAGATGCTCCGTCAGCGTTGGGGGATCACCGGTACCTGCTGGCCGCAATCCTCGTAATAATGTC
TGGTATCTCCCGACACCGCCGTATCTGTTGCGGGCACACCATGTCCCCATTCGGGTTTATGTCCG
GCCCGAGGAAATATCTCAACCTCGCGGTCCCCGTGCGGTCGCCGTGGGCGCAGTGGGCCGGTGCG
TGTCCTGTTCCTACGCGGCGGGGTGAGCCCGGGAGCGGGTACCCGGCCAATTCCTGCCTGCCCAC
GGCTTTTGGTGTTCTGGCCCTGCCGCGGGCTTGCCTCCGCCAGGTTAATTGCCGATATTAACTTG
AATTAGACAGGGGCCATTGTGTGGTACGTCAGCGATCAGCAGAGAATAAGCGAGCGAAGCGTAAC
AAAGTGCGCCCGGCGGCCTCTGCTGCCACGCGCGGCTTTCTCTCTGGTCGTCTACTGGTTCTATT
CCTTCCCCGTATTTTCTCTAGCTGGCCCAAGACTCACTACTAGCG
Right flanking sequence: Indices 110976 -- 111475
CCATTTCTCGCCCAGCGCGAGCTTTCCTCTACAATCCCAGCCCAGCGCTCATACCCCCTTGCTCG
TCCTCTACAATCCTAGCCCAGTGCTCATACCCTCGTCCCGCCTGCACACCGCCACACCCTACAAA
CGCGTGCCACCACACGCGTCTCCCCATGTCTCTGACCCGTCCCGAGCTCAAGTTCCTGGACACAG
CCGACGAGCGGCTGTATTTCCGCAAGCTCTCGCAGCTCCCGCCCAAGGACGACGCCCAGGTGCTC
CGGATCGTCGACCACAAGGACTACTTCACCTGCGTGGGTCCCGATGCCGACCTCGTGGCGTCGCA
GGTGTACCACACGAGCCTGGTGCTCAAGAAACACAACGGCCACACCTACGTGACGGTGCTGCCCC
CCGTGTTGCACACCCTCTTGAAATACGCGCTTCTCGAGCGCCAGATGAAGGTCGAGTTCTACTCG
CATCCCGGGATCGAGCTCGTGGCCGCAGGGTCGCCGGGCAACTTG
Found at i:110990 original size:26 final size:27
Alignment explanation
Indices: 110906--110990 Score: 73
Period size: 28 Copynumber: 3.1 Consensus size: 27
110896 ACTACTAGCG
* * * *
110906 CAGTGCTCGTACTGTACCCGTTCTGGGC
1 CAGTGCTCGTACT-CACCAGTTCTCGCC
* * *
110934 CAGTGCTCGTACTCTACCCGTTCTGGTC
1 CAGTGCTCGTACTC-ACCAGTTCTCGCC
*
110962 CAGTGCTCGTACTC-CCATTTCTCGCC
1 CAGTGCTCGTACTCACCAGTTCTCGCC
110988 CAG
1 CAG
110991 CGCGAGCTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
26 11 0.22
28 39 0.78
ACGTcount: A:0.12, C:0.36, G:0.22, T:0.29
Consensus pattern (27 bp):
CAGTGCTCGTACTCACCAGTTCTCGCC
Left flanking sequence: Indices 110406 -- 110905
GCAGATGCTCCGTCAGCGTTGGGGGATCACCGGTACCTGCTGGCCGCAATCCTCGTAATAATGTC
TGGTATCTCCCGACACCGCCGTATCTGTTGCGGGCACACCATGTCCCCATTCGGGTTTATGTCCG
GCCCGAGGAAATATCTCAACCTCGCGGTCCCCGTGCGGTCGCCGTGGGCGCAGTGGGCCGGTGCG
TGTCCTGTTCCTACGCGGCGGGGTGAGCCCGGGAGCGGGTACCCGGCCAATTCCTGCCTGCCCAC
GGCTTTTGGTGTTCTGGCCCTGCCGCGGGCTTGCCTCCGCCAGGTTAATTGCCGATATTAACTTG
AATTAGACAGGGGCCATTGTGTGGTACGTCAGCGATCAGCAGAGAATAAGCGAGCGAAGCGTAAC
AAAGTGCGCCCGGCGGCCTCTGCTGCCACGCGCGGCTTTCTCTCTGGTCGTCTACTGGTTCTATT
CCTTCCCCGTATTTTCTCTAGCTGGCCCAAGACTCACTACTAGCG
Right flanking sequence: Indices 110991 -- 111490
CGCGAGCTTTCCTCTACAATCCCAGCCCAGCGCTCATACCCCCTTGCTCGTCCTCTACAATCCTA
GCCCAGTGCTCATACCCTCGTCCCGCCTGCACACCGCCACACCCTACAAACGCGTGCCACCACAC
GCGTCTCCCCATGTCTCTGACCCGTCCCGAGCTCAAGTTCCTGGACACAGCCGACGAGCGGCTGT
ATTTCCGCAAGCTCTCGCAGCTCCCGCCCAAGGACGACGCCCAGGTGCTCCGGATCGTCGACCAC
AAGGACTACTTCACCTGCGTGGGTCCCGATGCCGACCTCGTGGCGTCGCAGGTGTACCACACGAG
CCTGGTGCTCAAGAAACACAACGGCCACACCTACGTGACGGTGCTGCCCCCCGTGTTGCACACCC
TCTTGAAATACGCGCTTCTCGAGCGCCAGATGAAGGTCGAGTTCTACTCGCATCCCGGGATCGAG
CTCGTGGCCGCAGGGTCGCCGGGCAACTTGGCGCCCATTCTGGCC
Found at i:115263 original size:27 final size:28
Alignment explanation
Indices: 115233--115287 Score: 85
Period size: 27 Copynumber: 2.0 Consensus size: 28
115223 CACTACCGCA
115233 CCACCAATACCAACCACCA-ATAACAAC
1 CCACCAATACCAACCACCAGATAACAAC
* *
115260 CCACCAGTACCAACCACCAGATACCAAC
1 CCACCAATACCAACCACCAGATAACAAC
115288 TCAACGTCGT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
27 18 0.72
28 7 0.28
ACGTcount: A:0.44, C:0.45, G:0.04, T:0.07
Consensus pattern (28 bp):
CCACCAATACCAACCACCAGATAACAAC
Left flanking sequence: Indices 114733 -- 115232
GTAGCCTAATAACCAAAAGAGTAAAGATACGCCCACGGAGTTCCGCGAGGTGAGCTTGGCGCTCC
GCCACGCGCCCGTAGCCTTGGTGACGTCGGGCCCGCCCGGTGGAGGATCCTACCCCATGCATGTG
GGCAGATCACACGCCCCGTACGGCACTGGTGACTTTGCGCAAGACAATGTTCGGGCGCTGCCGTC
GACATTTTGACACACTATCAGATGATGCCAAGTCACGTGGGGCATCACGTGGCGGGGTAACCACG
AAGGTGGAGTGGTTGGGCGTGGTTTACGGTGCTGATGTCGACGTGGGGTAGTGATGCGGTGGTGG
GAGATGGTGAGAAGCTGGTCGAAATTGGTGGAGATAGGATGGGAGAAAGAGAAACGACCAGCTGT
GGCGAATGCACTGGCGCGGTGAAGCTGAAGTAAGCCTACGCCACCACCAACGCCCGAGAACCACC
AACCACCACGATGACCACTAAAACCGCCTCAATCCCACTACCGCA
Right flanking sequence: Indices 115288 -- 115787
TCAACGTCGTTCACTCAAACGCCCTCCCGCCGCCGCCTCACACGTGCGGCGGTCTGCATAGAACC
CAGTCGAAGTCGCGATGCAAATAAACCAGCCCAGTGACCGTCAACGCAAATATGTTTTCCCCCGA
CGATGCCGTGGGGCAAGAGCTCAAGCACAACTTGACCCAGGAGTTACAGCGACGGTACAACGTCG
GCACCGACGCGCAAGACTATGCCGACTACATCGTGATGTTGATGGCCACGGGCAAGCTGAACGAG
GAGGTGGTGCGTGAAACGAACGAGATCTCATCTGACATGAAGATCGACGAGCCGTTCGTCCAGGT
GATCCAGCAGGAGGCACAGAACATCATCAACAGGCTCACCGCTGAGCAGTTCCAGGGGTTCCAGC
CCGACCAGCAGCAGCAGCAACAACAGCCGCCTGCCCAGCCCGAATTCACCCAGCCTCCGCAACAA
TCGCAACCAGAGTTCAACCAGCCGCCACCCCAGCAGCCCCAGCAG
Found at i:115284 original size:14 final size:13
Alignment explanation
Indices: 115232--115287 Score: 76
Period size: 13 Copynumber: 4.2 Consensus size: 13
115222 CCACTACCGC
115232 ACCACCAATACCA
1 ACCACCAATACCA
*
115245 ACCACCAATAACA
1 ACCACCAATACCA
*
115258 ACCCACCAGTACCA
1 A-CCACCAATACCA
115272 ACCACCAGATACCA
1 ACCACCA-ATACCA
115286 AC
1 AC
115288 TCAACGTCGT
Statistics
Matches: 37, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
13 19 0.51
14 18 0.49
ACGTcount: A:0.45, C:0.45, G:0.04, T:0.07
Consensus pattern (13 bp):
ACCACCAATACCA
Left flanking sequence: Indices 114732 -- 115231
AGTAGCCTAATAACCAAAAGAGTAAAGATACGCCCACGGAGTTCCGCGAGGTGAGCTTGGCGCTC
CGCCACGCGCCCGTAGCCTTGGTGACGTCGGGCCCGCCCGGTGGAGGATCCTACCCCATGCATGT
GGGCAGATCACACGCCCCGTACGGCACTGGTGACTTTGCGCAAGACAATGTTCGGGCGCTGCCGT
CGACATTTTGACACACTATCAGATGATGCCAAGTCACGTGGGGCATCACGTGGCGGGGTAACCAC
GAAGGTGGAGTGGTTGGGCGTGGTTTACGGTGCTGATGTCGACGTGGGGTAGTGATGCGGTGGTG
GGAGATGGTGAGAAGCTGGTCGAAATTGGTGGAGATAGGATGGGAGAAAGAGAAACGACCAGCTG
TGGCGAATGCACTGGCGCGGTGAAGCTGAAGTAAGCCTACGCCACCACCAACGCCCGAGAACCAC
CAACCACCACGATGACCACTAAAACCGCCTCAATCCCACTACCGC
Right flanking sequence: Indices 115288 -- 115787
TCAACGTCGTTCACTCAAACGCCCTCCCGCCGCCGCCTCACACGTGCGGCGGTCTGCATAGAACC
CAGTCGAAGTCGCGATGCAAATAAACCAGCCCAGTGACCGTCAACGCAAATATGTTTTCCCCCGA
CGATGCCGTGGGGCAAGAGCTCAAGCACAACTTGACCCAGGAGTTACAGCGACGGTACAACGTCG
GCACCGACGCGCAAGACTATGCCGACTACATCGTGATGTTGATGGCCACGGGCAAGCTGAACGAG
GAGGTGGTGCGTGAAACGAACGAGATCTCATCTGACATGAAGATCGACGAGCCGTTCGTCCAGGT
GATCCAGCAGGAGGCACAGAACATCATCAACAGGCTCACCGCTGAGCAGTTCCAGGGGTTCCAGC
CCGACCAGCAGCAGCAGCAACAACAGCCGCCTGCCCAGCCCGAATTCACCCAGCCTCCGCAACAA
TCGCAACCAGAGTTCAACCAGCCGCCACCCCAGCAGCCCCAGCAG
Found at i:120610 original size:11 final size:11
Alignment explanation
Indices: 120591--120626 Score: 54
Period size: 11 Copynumber: 3.3 Consensus size: 11
120581 CACCAATTGA
* *
120591 ACCATTCAATC
1 ACCACTCAACC
120602 ACCACTCAACC
1 ACCACTCAACC
120613 ACCACTCAACC
1 ACCACTCAACC
120624 ACC
1 ACC
120627 TCCTCCTCTA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
11 23 1.00
ACGTcount: A:0.36, C:0.50, G:0.00, T:0.14
Consensus pattern (11 bp):
ACCACTCAACC
Left flanking sequence: Indices 120091 -- 120590
ACGTTGCAGAGCTTCCCGTTCCGCAACTTCCCCATGGTGGTGCCGCTTGCCCAGTACGTGATCAC
CCAGATCTGTCTCCGGTTCTACGGTTTTGAGCGTGACACCGTGTTCTTTGCCGTGCTGTGGTTGG
GGCTCGGGGTGACGTTTGGCATCCACGGGCTGTTTGTCGCCGACATCATCTACGAGATCACCACC
TACTTGGACATCTACACGTTGTCGATCAAGCACAAGCGGGCGTAATAGACTTTCATGCTCCGGCA
TGCTGTATTAGGATAGATAGACGCACGTCCGATAACTCCATTGTAATGATAAGCATAAAATTGAC
ACCAGGGTCATGCGGCTAAGGAACTCAGATTGTAATGTTAGATCGTCGGAGCATACGATTTCACT
ACCATTGGCCCACATCCGCCAATTGACCTACCACCTCACAGGTCAATCCAATCTCCACTTATAAG
ATAATCAATCTACTTCCCCAACCAATTCTATTCACCACCAATTGA
Right flanking sequence: Indices 120627 -- 121126
TCCTCCTCTACCATCCAACGTGTTATGTAATTTCGTACATATCTACATCACAGCAATACTCGGCA
ATGTGCGACCACTCATTGGCAAATATTGAGAAGCTTACAACGAGGGGAAGTTGGCGTCGTTGATC
TCGGCCTTCTTGGGGGCGTCGCCAGACTTCTTGGCAGGGCCCTTCTTGGCACCGTCACGGCCACC
TCTGTTGGAGGGACGCTCGCCTCTGTTGGAGGGACGCTCGCCACGCTCACGGGGAGCAGACTGGC
GGGGCTGGTCGGCAAACACAGCCTCAAAGTCAAGGAACTTCTTCTCCTTGTTCTTCTTCTGCTTG
GCCTGCTTGTTGGCGGTGGCAGACACAAACTCCTCCTCCTGCTTCTCAATCTTGTCACCAGAGAC
GTCGGCGCCGTCGTTGGCCTGTCTCAAGTTCTTGGAACCCTCCAAGCCGGACTGCTTGGTCTTCA
ACTCCTCAAAGTACTCCGCAAGAGACTTGCCCTTGGGAGCAGCGG
Found at i:120844 original size:21 final size:21
Alignment explanation
Indices: 120820--120863 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
120810 GTCACGGCCA
120820 CCTCTGTTGGAGGGACGCTCG
1 CCTCTGTTGGAGGGACGCTCG
120841 CCTCTGTTGGAGGGACGCTCG
1 CCTCTGTTGGAGGGACGCTCG
120862 CC
1 CC
120864 ACGCTCACGG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.09, C:0.32, G:0.36, T:0.23
Consensus pattern (21 bp):
CCTCTGTTGGAGGGACGCTCG
Left flanking sequence: Indices 120320 -- 120819
AGCGGGCGTAATAGACTTTCATGCTCCGGCATGCTGTATTAGGATAGATAGACGCACGTCCGATA
ACTCCATTGTAATGATAAGCATAAAATTGACACCAGGGTCATGCGGCTAAGGAACTCAGATTGTA
ATGTTAGATCGTCGGAGCATACGATTTCACTACCATTGGCCCACATCCGCCAATTGACCTACCAC
CTCACAGGTCAATCCAATCTCCACTTATAAGATAATCAATCTACTTCCCCAACCAATTCTATTCA
CCACCAATTGAACCATTCAATCACCACTCAACCACCACTCAACCACCTCCTCCTCTACCATCCAA
CGTGTTATGTAATTTCGTACATATCTACATCACAGCAATACTCGGCAATGTGCGACCACTCATTG
GCAAATATTGAGAAGCTTACAACGAGGGGAAGTTGGCGTCGTTGATCTCGGCCTTCTTGGGGGCG
TCGCCAGACTTCTTGGCAGGGCCCTTCTTGGCACCGTCACGGCCA
Right flanking sequence: Indices 120864 -- 121363
ACGCTCACGGGGAGCAGACTGGCGGGGCTGGTCGGCAAACACAGCCTCAAAGTCAAGGAACTTCT
TCTCCTTGTTCTTCTTCTGCTTGGCCTGCTTGTTGGCGGTGGCAGACACAAACTCCTCCTCCTGC
TTCTCAATCTTGTCACCAGAGACGTCGGCGCCGTCGTTGGCCTGTCTCAAGTTCTTGGAACCCTC
CAAGCCGGACTGCTTGGTCTTCAACTCCTCAAAGTACTCCGCAAGAGACTTGCCCTTGGGAGCAG
CGGGGGGAGCGGGGCCCTGGTCCTTGGAGGCCTCCTCGTCGGCGTCCTCGGCACCCTCGACCTCG
GCGTCGATCTGGGCCTTGGTGGACTCGCCCCAGCCCTGTCTGACCTTCTTCTTCGAGTCGGCGTT
TCTTCTCGAGTGACGGTCAAAAGGCTTCTTCTGGTGCTTGGACGAGGTGTCGGCGGGGGCCTCCT
TGCCACGGTTGGTGTTCTTGGCACGGGCAGCAGCCTCGTTGCCCG
Found at i:122394 original size:31 final size:31
Alignment explanation
Indices: 122353--122443 Score: 101
Period size: 31 Copynumber: 2.9 Consensus size: 31
122343 AAACCATACT
* *
122353 CCAACACCAATACAGCCAGTAGCCAATATTG
1 CCAACACCAATACAGCCAATAACCAATATTG
* **
122384 CCAATACCAATACAGCCAATAACCAATACAG
1 CCAACACCAATACAGCCAATAACCAATATTG
* * *
122415 CCCAAAATCAATACAGCCAAAAACCAATA
1 -CCAACACCAATACAGCCAATAACCAATA
122444 CAGCTAAAAA
Statistics
Matches: 51, Mismatches: 8, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
31 26 0.51
32 25 0.49
ACGTcount: A:0.47, C:0.32, G:0.08, T:0.13
Consensus pattern (31 bp):
CCAACACCAATACAGCCAATAACCAATATTG
Left flanking sequence: Indices 121853 -- 122352
ACTTACCCCAAAGGGGACTCGATCTCACGAGGGTAACGCGCAGCCAAAGTCGAGTCCGTGCGGCC
AATGGCCGGCTCGGCGACTTGCTGGGGTGCTCCACGGCGCATACAGCACCAGTAAGACATCATAC
GATAGCTATGCAGGGAGACGGCTGCCACAGTCGGCCCGATTGTGGAGGGCCCTGAGTCATCGTGC
AGGCGAATCGAGTGCGAGTTTGAAATTAAGGACGACCCGCTGTAGGGTGCACTGGTGGCCTGGTG
GTGGCGGTACTAGCATTGGTGGTCGGTACTGGTGCCTCGGGCGGCGCTGTGCCATGCGTGGGGTC
CTGCAAGGGACGGGACATGGACGCTGGCGAGCCGTAAACAATGCGTCGGGCGTTGCTGGGGTGTC
TGAAGTATTTTGCCCAGATCCATGCTTGCTGGATCTAGCTAAAAATAAATGGCCCAAAGGGGAAG
GACAAGAGCAAGAGGTACCAATGCATTCCAACGGCAAACCATACT
Right flanking sequence: Indices 122444 -- 122943
CAGCTAAAAACCAATACAGCTAAAAACCCATACTACCAAAAAACCAATGCAGCCACCAATGCATT
GCCCACAGGTGACCCATGCACACTGCCACCAATACAGCCAACAACCCCTACTGCCTACACCAACA
CACCGCCTACAAAACCTCCTTTCTATCTTATATTACACTATTTTTTGTAGATAAACTGCTCGCCA
GTCCGGGTAAGAAACTGTTTCATCGCCCCGCGCAAGTCTTGCGGGATCAGCCGGTCGAACAAACT
GAGAGTCTTGGCATACATCGCCGGCGCATACTCGACAAAGTCCGAGTCGTCGAGCTCACAGTAGC
CCTGGTAGATCTCGACAATCACCGGCTTCCAGATGGTGATGTTGCGCTGGTGCGGCTGCTCCTCC
AACTCGGAGAACCGCTCGGTGATGGCCTGGCACAACGGGATCACCGTGGCCATGATCTCGCGCTT
GCGGTCGCCAGACACCTTGTCCTCGTCGCAGTACATGCGGAACAT
Found at i:122464 original size:16 final size:16
Alignment explanation
Indices: 122358--122498 Score: 133
Period size: 16 Copynumber: 8.8 Consensus size: 16
122348 ATACTCCAAC
**
122358 ACCAATACAGCCAGTA
1 ACCAATACAGCCAAAA
* ** *
122374 GCCAATATTGCC-AAT
1 ACCAATACAGCCAAAA
*
122389 ACCAATACAGCCAATA
1 ACCAATACAGCCAAAA
*
122405 ACCAATACAGCCCAAA
1 ACCAATACAGCCAAAA
*
122421 ATCAATACAGCCAAAA
1 ACCAATACAGCCAAAA
*
122437 ACCAATACAGCTAAAA
1 ACCAATACAGCCAAAA
*
122453 ACCAATACAGCTAAAA
1 ACCAATACAGCCAAAA
*
122469 ACCCATACTA-CCAAAAA
1 ACCAATAC-AGCC-AAAA
*
122486 ACCAATGCAGCCA
1 ACCAATACAGCCA
122499 CCAATGCATT
Statistics
Matches: 100, Mismatches: 21, Indels: 8
0.78 0.16 0.06
Matches are distributed among these distances:
15 9 0.09
16 78 0.78
17 13 0.13
ACGTcount: A:0.49, C:0.30, G:0.08, T:0.13
Consensus pattern (16 bp):
ACCAATACAGCCAAAA
Left flanking sequence: Indices 121858 -- 122357
CCCCAAAGGGGACTCGATCTCACGAGGGTAACGCGCAGCCAAAGTCGAGTCCGTGCGGCCAATGG
CCGGCTCGGCGACTTGCTGGGGTGCTCCACGGCGCATACAGCACCAGTAAGACATCATACGATAG
CTATGCAGGGAGACGGCTGCCACAGTCGGCCCGATTGTGGAGGGCCCTGAGTCATCGTGCAGGCG
AATCGAGTGCGAGTTTGAAATTAAGGACGACCCGCTGTAGGGTGCACTGGTGGCCTGGTGGTGGC
GGTACTAGCATTGGTGGTCGGTACTGGTGCCTCGGGCGGCGCTGTGCCATGCGTGGGGTCCTGCA
AGGGACGGGACATGGACGCTGGCGAGCCGTAAACAATGCGTCGGGCGTTGCTGGGGTGTCTGAAG
TATTTTGCCCAGATCCATGCTTGCTGGATCTAGCTAAAAATAAATGGCCCAAAGGGGAAGGACAA
GAGCAAGAGGTACCAATGCATTCCAACGGCAAACCATACTCCAAC
Right flanking sequence: Indices 122499 -- 122998
CCAATGCATTGCCCACAGGTGACCCATGCACACTGCCACCAATACAGCCAACAACCCCTACTGCC
TACACCAACACACCGCCTACAAAACCTCCTTTCTATCTTATATTACACTATTTTTTGTAGATAAA
CTGCTCGCCAGTCCGGGTAAGAAACTGTTTCATCGCCCCGCGCAAGTCTTGCGGGATCAGCCGGT
CGAACAAACTGAGAGTCTTGGCATACATCGCCGGCGCATACTCGACAAAGTCCGAGTCGTCGAGC
TCACAGTAGCCCTGGTAGATCTCGACAATCACCGGCTTCCAGATGGTGATGTTGCGCTGGTGCGG
CTGCTCCTCCAACTCGGAGAACCGCTCGGTGATGGCCTGGCACAACGGGATCACCGTGGCCATGA
TCTCGCGCTTGCGGTCGCCAGACACCTTGTCCTCGTCGCAGTACATGCGGAACATGATGTTGAGG
TACACCGCCAGCGAGCTCAGCTCCTGCTTGAGCAAGTTGGGCAAC
Found at i:127318 original size:15 final size:15
Alignment explanation
Indices: 127294--127323 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
127284 CGATGGCCCG
*
127294 CAGCTTGGTGGTGGC
1 CAGCTGGGTGGTGGC
127309 CAGCTGGGTGGTGGC
1 CAGCTGGGTGGTGGC
127324 ACACGTCTTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.07, C:0.20, G:0.50, T:0.23
Consensus pattern (15 bp):
CAGCTGGGTGGTGGC
Left flanking sequence: Indices 126794 -- 127293
AACACGAGGTACGCGTCCTTGACGGCGACGTCCTCGGCGCCCTCGACGTCGTCCACCTCCGCCAC
CAGCACCAGCCCCTGCTCCATGTTGGCAAGCGTCACCGGCGCCAACTCCTCCAGCCGCGAGTGCT
GGCGGCTGGGCATCGGCAGCGCCGCCCGCAGCGGGTGGCCGTGGCCACTGCGGTCGCCGATGCGG
TGGTACACGTCGTTGATCACCTGGGTCAACAGCCCCTGCGCCACCGCCTGGTTGGCCAGCAGCAA
CGAGAACACAAACACGTTGTAGATCAGCCGCACCGCCTTGAGAAGCACGGCACCGTGCGCGGGCA
TCGCCAAGATGCAGTGCATCAACGCCCGGATCACCTGGAGCTCGACCTTGGCGTCGGTGCCCTCG
CCCTCCAAGCACTCGGCAATCACGTCCACCGCGCGCGCCACGAGCCCGGCCAGCTCCTCCTCCAG
GTACGGGCGGTACTCAAACAACTTGACGAACCCGTCGATGGCCCG
Right flanking sequence: Indices 127324 -- 127823
ACACGTCTTTTCCAACGCGGCGAAAATCGCCTCCGACTCGCTGGGCACCTGGTGGTGGGCCTTGA
CCGCGTCGGCCGCGCGCTGCACCGTGTTCTTCCACAGCTCGTTCTTTTTGATCTCCTTGGCCGCA
AGCACGTGCTCGAAGAACAGGAGCGTCGGGTCCACCGACAGCGTCAGCGGGCGGGCGGTGGGCGT
GGGCGGCTCGTACGCCTGCGACGACATGCCGCTGGGGGTGGCGGGGGGTTCGTAGGCTTGCGAGG
TCATTCCCAGCGGCGTGGCTGGCGGCTCGTACGCCTGGGAGGTCATCCCCAGCGGGGTGGACGGG
CGGATGGCCAGCGGCGTGCCCGGCGGCGACGGGGGAAGCTCCTTGTCGAGCGACAGCTCCAGCAC
GCTGATGGTGGGGAGGGCCGACTCCTGGGGCGAATTGTCGGGCTGTTCGGTTGCGGCAGACTCGG
GCAGCTCAGGCTCATCGGGCTGGTCGGGCTCATCGGGCTGGTCAG
Found at i:127602 original size:42 final size:42
Alignment explanation
Indices: 127519--127651 Score: 124
Period size: 42 Copynumber: 3.1 Consensus size: 42
127509 CGGTGGGCGT
* * * * *
127519 GGGCGGCTCGTACGCCTGCGACGACATGCCGCTG-GGGGTGGC
1 GGGCGGCTCGTACGCCTGCGAGGTCAT-CCCCAGCGGCGTGGC
* * * * *
127561 GGGGGGTTCGTAGGCTTGCGAGGTCATTCCCAGCGGCGTGGC
1 GGGCGGCTCGTACGCCTGCGAGGTCATCCCCAGCGGCGTGGC
* * *
127603 TGGCGGCTCGTACGCCTGGGAGGTCATCCCCAGCGGGGTGGAC
1 GGGCGGCTCGTACGCCTGCGAGGTCATCCCCAGCGGCGTGG-C
127646 GGGCGG
1 GGGCGG
127652 ATGGCCAGCG
Statistics
Matches: 70, Mismatches: 19, Indels: 3
0.76 0.21 0.03
Matches are distributed among these distances:
41 3 0.04
42 61 0.87
43 6 0.09
ACGTcount: A:0.10, C:0.28, G:0.46, T:0.17
Consensus pattern (42 bp):
GGGCGGCTCGTACGCCTGCGAGGTCATCCCCAGCGGCGTGGC
Left flanking sequence: Indices 127019 -- 127518
AGCCCCTGCGCCACCGCCTGGTTGGCCAGCAGCAACGAGAACACAAACACGTTGTAGATCAGCCG
CACCGCCTTGAGAAGCACGGCACCGTGCGCGGGCATCGCCAAGATGCAGTGCATCAACGCCCGGA
TCACCTGGAGCTCGACCTTGGCGTCGGTGCCCTCGCCCTCCAAGCACTCGGCAATCACGTCCACC
GCGCGCGCCACGAGCCCGGCCAGCTCCTCCTCCAGGTACGGGCGGTACTCAAACAACTTGACGAA
CCCGTCGATGGCCCGCAGCTTGGTGGTGGCCAGCTGGGTGGTGGCACACGTCTTTTCCAACGCGG
CGAAAATCGCCTCCGACTCGCTGGGCACCTGGTGGTGGGCCTTGACCGCGTCGGCCGCGCGCTGC
ACCGTGTTCTTCCACAGCTCGTTCTTTTTGATCTCCTTGGCCGCAAGCACGTGCTCGAAGAACAG
GAGCGTCGGGTCCACCGACAGCGTCAGCGGGCGGGCGGTGGGCGT
Right flanking sequence: Indices 127652 -- 128151
ATGGCCAGCGGCGTGCCCGGCGGCGACGGGGGAAGCTCCTTGTCGAGCGACAGCTCCAGCACGCT
GATGGTGGGGAGGGCCGACTCCTGGGGCGAATTGTCGGGCTGTTCGGTTGCGGCAGACTCGGGCA
GCTCAGGCTCATCGGGCTGGTCGGGCTCATCGGGCTGGTCAGGCTGGTCAGACTTCTCAGACTGC
TCAGCGGACTGTTCCGGCTGTTTTGATTCGTTCGCCTCTTCGGTCTGGTGCGACTCTTCGGTCTT
GCTCGATTCTTCGGGCTGTGTGGACTTTTCCAGCTCTTTGGTGTCTGTTTCGTCTACCGTTTCCG
TATTAGGCTTTTCCTCCTCCTCTTTTTCCTCCTCTTTCTCCTCCTCTTTGTCTAGGCTCCGTGCC
TCATTGTGCTCGGCGGACACACCCGGGCCCGCGTGGCCGTTGGCCTCGGGCTCGGGCACACTGCC
GGCACCCTTGGTTAGATCAATCTCACCCAGAGACATTGGCAGCAC
Found at i:127798 original size:18 final size:18
Alignment explanation
Indices: 127784--127826 Score: 77
Period size: 18 Copynumber: 2.4 Consensus size: 18
127774 CTCGGGCAGC
127784 TCAGGCTCATCGGGCTGG
1 TCAGGCTCATCGGGCTGG
*
127802 TCGGGCTCATCGGGCTGG
1 TCAGGCTCATCGGGCTGG
127820 TCAGGCT
1 TCAGGCT
127827 GGTCAGACTT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.09, C:0.28, G:0.40, T:0.23
Consensus pattern (18 bp):
TCAGGCTCATCGGGCTGG
Left flanking sequence: Indices 127284 -- 127783
CGATGGCCCGCAGCTTGGTGGTGGCCAGCTGGGTGGTGGCACACGTCTTTTCCAACGCGGCGAAA
ATCGCCTCCGACTCGCTGGGCACCTGGTGGTGGGCCTTGACCGCGTCGGCCGCGCGCTGCACCGT
GTTCTTCCACAGCTCGTTCTTTTTGATCTCCTTGGCCGCAAGCACGTGCTCGAAGAACAGGAGCG
TCGGGTCCACCGACAGCGTCAGCGGGCGGGCGGTGGGCGTGGGCGGCTCGTACGCCTGCGACGAC
ATGCCGCTGGGGGTGGCGGGGGGTTCGTAGGCTTGCGAGGTCATTCCCAGCGGCGTGGCTGGCGG
CTCGTACGCCTGGGAGGTCATCCCCAGCGGGGTGGACGGGCGGATGGCCAGCGGCGTGCCCGGCG
GCGACGGGGGAAGCTCCTTGTCGAGCGACAGCTCCAGCACGCTGATGGTGGGGAGGGCCGACTCC
TGGGGCGAATTGTCGGGCTGTTCGGTTGCGGCAGACTCGGGCAGC
Right flanking sequence: Indices 127827 -- 128326
GGTCAGACTTCTCAGACTGCTCAGCGGACTGTTCCGGCTGTTTTGATTCGTTCGCCTCTTCGGTC
TGGTGCGACTCTTCGGTCTTGCTCGATTCTTCGGGCTGTGTGGACTTTTCCAGCTCTTTGGTGTC
TGTTTCGTCTACCGTTTCCGTATTAGGCTTTTCCTCCTCCTCTTTTTCCTCCTCTTTCTCCTCCT
CTTTGTCTAGGCTCCGTGCCTCATTGTGCTCGGCGGACACACCCGGGCCCGCGTGGCCGTTGGCC
TCGGGCTCGGGCACACTGCCGGCACCCTTGGTTAGATCAATCTCACCCAGAGACATTGGCAGCAC
TGTGAAAACGCGTGGGGGTGCTCGAACCGGGTAGCCTGTCAAACAACGTTGTGTTACGTCGCTCG
AAAAATCGCCAATTGATCCAGGTCGCGGGTGCGCGGGCTCGTAACAGAGGCAGTGGGGTGGGAGA
GGTGGCGGTGAGAAAAGGTGAGAAAAGGTGGGCGTAATATGAGAA
Found at i:127922 original size:18 final size:18
Alignment explanation
Indices: 127882--127925 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
127872 ATTCGTTCGC
*
127882 CTCTTCGGTCTGGTGCGA
1 CTCTTCGGTCTGCTGCGA
127900 CTCTTCGGTCTTGCT-CGA
1 CTCTTCGGTC-TGCTGCGA
*
127918 TTCTTCGG
1 CTCTTCGG
127926 GCTGTGTGGA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
18 20 0.87
19 3 0.13
ACGTcount: A:0.05, C:0.30, G:0.27, T:0.39
Consensus pattern (18 bp):
CTCTTCGGTCTGCTGCGA
Left flanking sequence: Indices 127382 -- 127881
GCCTTGACCGCGTCGGCCGCGCGCTGCACCGTGTTCTTCCACAGCTCGTTCTTTTTGATCTCCTT
GGCCGCAAGCACGTGCTCGAAGAACAGGAGCGTCGGGTCCACCGACAGCGTCAGCGGGCGGGCGG
TGGGCGTGGGCGGCTCGTACGCCTGCGACGACATGCCGCTGGGGGTGGCGGGGGGTTCGTAGGCT
TGCGAGGTCATTCCCAGCGGCGTGGCTGGCGGCTCGTACGCCTGGGAGGTCATCCCCAGCGGGGT
GGACGGGCGGATGGCCAGCGGCGTGCCCGGCGGCGACGGGGGAAGCTCCTTGTCGAGCGACAGCT
CCAGCACGCTGATGGTGGGGAGGGCCGACTCCTGGGGCGAATTGTCGGGCTGTTCGGTTGCGGCA
GACTCGGGCAGCTCAGGCTCATCGGGCTGGTCGGGCTCATCGGGCTGGTCAGGCTGGTCAGACTT
CTCAGACTGCTCAGCGGACTGTTCCGGCTGTTTTGATTCGTTCGC
Right flanking sequence: Indices 127926 -- 128425
GCTGTGTGGACTTTTCCAGCTCTTTGGTGTCTGTTTCGTCTACCGTTTCCGTATTAGGCTTTTCC
TCCTCCTCTTTTTCCTCCTCTTTCTCCTCCTCTTTGTCTAGGCTCCGTGCCTCATTGTGCTCGGC
GGACACACCCGGGCCCGCGTGGCCGTTGGCCTCGGGCTCGGGCACACTGCCGGCACCCTTGGTTA
GATCAATCTCACCCAGAGACATTGGCAGCACTGTGAAAACGCGTGGGGGTGCTCGAACCGGGTAG
CCTGTCAAACAACGTTGTGTTACGTCGCTCGAAAAATCGCCAATTGATCCAGGTCGCGGGTGCGC
GGGCTCGTAACAGAGGCAGTGGGGTGGGAGAGGTGGCGGTGAGAAAAGGTGAGAAAAGGTGGGCG
TAATATGAGAAGGGTGGGAGAGGTGGGAAAGGTGGGTGTAATGTGGTTGATGTATGGTTGTGGTG
TGGTTGAGATGTGTATTTAGGTGGACCGTTTGTTCGTGTGTTATT
Found at i:128008 original size:12 final size:12
Alignment explanation
Indices: 127990--128025 Score: 63
Period size: 12 Copynumber: 3.0 Consensus size: 12
127980 TAGGCTTTTC
127990 CTCCTCCTCTTT
1 CTCCTCCTCTTT
*
128002 TTCCTCCTCTTT
1 CTCCTCCTCTTT
128014 CTCCTCCTCTTT
1 CTCCTCCTCTTT
128026 GTCTAGGCTC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.00, C:0.47, G:0.00, T:0.53
Consensus pattern (12 bp):
CTCCTCCTCTTT
Left flanking sequence: Indices 127490 -- 127989
GACAGCGTCAGCGGGCGGGCGGTGGGCGTGGGCGGCTCGTACGCCTGCGACGACATGCCGCTGGG
GGTGGCGGGGGGTTCGTAGGCTTGCGAGGTCATTCCCAGCGGCGTGGCTGGCGGCTCGTACGCCT
GGGAGGTCATCCCCAGCGGGGTGGACGGGCGGATGGCCAGCGGCGTGCCCGGCGGCGACGGGGGA
AGCTCCTTGTCGAGCGACAGCTCCAGCACGCTGATGGTGGGGAGGGCCGACTCCTGGGGCGAATT
GTCGGGCTGTTCGGTTGCGGCAGACTCGGGCAGCTCAGGCTCATCGGGCTGGTCGGGCTCATCGG
GCTGGTCAGGCTGGTCAGACTTCTCAGACTGCTCAGCGGACTGTTCCGGCTGTTTTGATTCGTTC
GCCTCTTCGGTCTGGTGCGACTCTTCGGTCTTGCTCGATTCTTCGGGCTGTGTGGACTTTTCCAG
CTCTTTGGTGTCTGTTTCGTCTACCGTTTCCGTATTAGGCTTTTC
Right flanking sequence: Indices 128026 -- 128525
GTCTAGGCTCCGTGCCTCATTGTGCTCGGCGGACACACCCGGGCCCGCGTGGCCGTTGGCCTCGG
GCTCGGGCACACTGCCGGCACCCTTGGTTAGATCAATCTCACCCAGAGACATTGGCAGCACTGTG
AAAACGCGTGGGGGTGCTCGAACCGGGTAGCCTGTCAAACAACGTTGTGTTACGTCGCTCGAAAA
ATCGCCAATTGATCCAGGTCGCGGGTGCGCGGGCTCGTAACAGAGGCAGTGGGGTGGGAGAGGTG
GCGGTGAGAAAAGGTGAGAAAAGGTGGGCGTAATATGAGAAGGGTGGGAGAGGTGGGAAAGGTGG
GTGTAATGTGGTTGATGTATGGTTGTGGTGTGGTTGAGATGTGTATTTAGGTGGACCGTTTGTTC
GTGTGTTATTCTGCCTTCGTGAGGGTCTCGGTAAATGTTGGGATCGTAACCACACAATAGAAAGT
GGTCCGTGTCGGCTACGTAAGCCTCGGAAAGGTGATGACACGGTA
Found at i:128021 original size:15 final size:14
Alignment explanation
Indices: 127984--128025 Score: 56
Period size: 12 Copynumber: 3.3 Consensus size: 14
127974 CCGTATTAGG
127984 CTTTTCCTCCTCCT
1 CTTTTCCTCCTCCT
127998 CTTTT--TCCTCCT
1 CTTTTCCTCCTCCT
128010 C-TTT-CTCCTCCT
1 CTTTTCCTCCTCCT
128022 CTTT
1 CTTT
128026 GTCTAGGCTC
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
11 3 0.12
12 16 0.62
13 2 0.08
14 5 0.19
ACGTcount: A:0.00, C:0.45, G:0.00, T:0.55
Consensus pattern (14 bp):
CTTTTCCTCCTCCT
Left flanking sequence: Indices 127484 -- 127983
TCCACCGACAGCGTCAGCGGGCGGGCGGTGGGCGTGGGCGGCTCGTACGCCTGCGACGACATGCC
GCTGGGGGTGGCGGGGGGTTCGTAGGCTTGCGAGGTCATTCCCAGCGGCGTGGCTGGCGGCTCGT
ACGCCTGGGAGGTCATCCCCAGCGGGGTGGACGGGCGGATGGCCAGCGGCGTGCCCGGCGGCGAC
GGGGGAAGCTCCTTGTCGAGCGACAGCTCCAGCACGCTGATGGTGGGGAGGGCCGACTCCTGGGG
CGAATTGTCGGGCTGTTCGGTTGCGGCAGACTCGGGCAGCTCAGGCTCATCGGGCTGGTCGGGCT
CATCGGGCTGGTCAGGCTGGTCAGACTTCTCAGACTGCTCAGCGGACTGTTCCGGCTGTTTTGAT
TCGTTCGCCTCTTCGGTCTGGTGCGACTCTTCGGTCTTGCTCGATTCTTCGGGCTGTGTGGACTT
TTCCAGCTCTTTGGTGTCTGTTTCGTCTACCGTTTCCGTATTAGG
Right flanking sequence: Indices 128026 -- 128525
GTCTAGGCTCCGTGCCTCATTGTGCTCGGCGGACACACCCGGGCCCGCGTGGCCGTTGGCCTCGG
GCTCGGGCACACTGCCGGCACCCTTGGTTAGATCAATCTCACCCAGAGACATTGGCAGCACTGTG
AAAACGCGTGGGGGTGCTCGAACCGGGTAGCCTGTCAAACAACGTTGTGTTACGTCGCTCGAAAA
ATCGCCAATTGATCCAGGTCGCGGGTGCGCGGGCTCGTAACAGAGGCAGTGGGGTGGGAGAGGTG
GCGGTGAGAAAAGGTGAGAAAAGGTGGGCGTAATATGAGAAGGGTGGGAGAGGTGGGAAAGGTGG
GTGTAATGTGGTTGATGTATGGTTGTGGTGTGGTTGAGATGTGTATTTAGGTGGACCGTTTGTTC
GTGTGTTATTCTGCCTTCGTGAGGGTCTCGGTAAATGTTGGGATCGTAACCACACAATAGAAAGT
GGTCCGTGTCGGCTACGTAAGCCTCGGAAAGGTGATGACACGGTA
Found at i:134077 original size:15 final size:15
Alignment explanation
Indices: 134059--134101 Score: 61
Period size: 15 Copynumber: 2.9 Consensus size: 15
134049 AGCCGCGGGA
134059 GCAGCGGCAGCAGGG
1 GCAGCGGCAGCAGGG
134074 GCAGCGGCCA-CAGGG
1 GCAGCGG-CAGCAGGG
*
134089 GCAGCCGCAGCAG
1 GCAGCGGCAGCAG
134102 CCTCGACAGG
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
14 2 0.08
15 21 0.84
16 2 0.08
ACGTcount: A:0.21, C:0.33, G:0.47, T:0.00
Consensus pattern (15 bp):
GCAGCGGCAGCAGGG
Left flanking sequence: Indices 133559 -- 134058
TGGCCGCGTACTTCTGGGCAAGCGAGTCCAAGAACGCCTTGGCGTCGCCTTCGGAGCCCAACCGG
GCCGCGGGCTCGTTGGTGAGCCCCAACAACAACACCGCGTCCTGGCGACCAGCGGCAAACCCGTA
GCGCAGCTCCAAATACTTACGAGCCACCGAGATCGAGAACCCACCGGGCATCTTCAGCGACATCA
ACCGGGCAATGAGCGAGGTAGACGTCTTGCCCAACGCACCAGAGAACAGGTCCTGGAACTGCTCG
GCCAACTCCTCGAGCGGAGTGTCCTCGGGCTTCTCGGGGGTCAGCCCAAACTCCTTCCCGAGATC
ACCCAAGATCTCGTTCTGGACAGTGGACTTACCGTTGACAAGGTCCTTGATGGCCTTGGTCATGG
GAATGGCATCCAAAGGCTTCTTGAGCTTCTGGGCCACCAACACGTGGATGAGAAGCTTAGCCGGG
ACGGGCTCGTCCGCCACGGCCTCAACGGGGCCAGCAGCCGCGGGA
Right flanking sequence: Indices 134102 -- 134601
CCTCGACAGGAGCAGCAGCCTCGGCCGCAGGCTCAGCAGCCGCCGCCAACTCCGCCGGGTCGGGG
GTGTAATAAATAGTGTCCTTGTCCTTGGAGTAGGTGAGCACCTCACGGGTCAACGAGAGCGACGC
GTCAAAAGACTTGTACTTGGACTGGATGGTACGCGTGGCCATGCCCGCCAACGTGGGCGCGGGCC
CGACCTCGATCACCCGCTCGGTCAAACGGTCCTCGGCGAGGAACGAGTCCATCAGCGAGATCCAC
TGCACAGGCAGGGCAAACTGGTATGAAAGCAACGTGACCATCAACTCATAACTGAGTTCTTGTTC
GATTTCCGGTCTCATTGTGTGTGTGGTTGCGAATGGGATGTGGGACGGCTTCGAGGGTATATAAG
TGTCCCTGGTGATGTTGGGTCTGCAGGGGCTTCGAACCGGTGCAGGGTACCGATCGGGACCCGTG
GGTTGGGTGGTGAAAAGTGGGTAGAGGGGGTGGTCGGGGGGCTGG
Found at i:137947 original size:13 final size:13
Alignment explanation
Indices: 137931--137972 Score: 66
Period size: 13 Copynumber: 3.2 Consensus size: 13
137921 CACCACATTT
*
137931 CACAACCACAACA
1 CACAACCACACCA
137944 CACAACCACACCA
1 CACAACCACACCA
*
137957 AACAACCACACCA
1 CACAACCACACCA
137970 CAC
1 CAC
137973 TAAACTCCAT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
13 26 1.00
ACGTcount: A:0.50, C:0.50, G:0.00, T:0.00
Consensus pattern (13 bp):
CACAACCACACCA
Left flanking sequence: Indices 137431 -- 137930
GGATCGAGACGGGGTTAGACGCCATGGTGATCATGGCGGGGTAGATGTAACAACATGACGGACTT
ACGTGAATACGGCTAGGACTAATAGAGATATGAATGAGTAAAGGGGAAGTAGAAGAGTCGTGTGG
GTGGTGGGTGATGCGAGGGGGATGATAGATAAGATAAGGAGGGTATGGTGGGTAGGTGGGGAATT
GAGGCGGGTGAGTAATTGAGATGTGCGAGAATTGAAGTGGGCGAGTATGCTGGTTGAGTAATATA
GCTGGGTGAGTAATAGGTGAGTGATTGGTGCTCAAGTGAGTGAAATCCACGGTGGACAAGTTGGA
ATTCTAATGTAGGCATACGTAAGCTAAAGTACTTGGCGAAGGGTGAAAGGAGGGGTAGAGAGAGG
GGTAGAGTGGTGGAAAAAACCGCGAATAGGAGTAGTGAAGGGATACGGAAGATGAAATGGTTTAA
AAACAACAGGGGTAGAATGGGCGATCCTGTTATCTCACCACATTT
Right flanking sequence: Indices 137973 -- 138472
TAAACTCCATTGTTACTATCCCCGCCATCACCCCTACAACCACCACCCATACAACCGCCACCCCT
ACTATCACCACTGCCAACCTCCACCACCACCCACTCACCACTTATTGCCACCCATTCCTCCCCAC
TCCATCCCTACATACCCTTTTTATCCCACCCACTCTCGTCTAACCCGTTTTTGGAAAACCTGCAC
AGCGCGCTTCCCCACAACGGTTTTCGTCACATGGTGCAAACACCACCACCATGCTTAAGATCAAC
TTCCAGGTGCCGTTGGTGGTGACGCGCCGGACACTATACATCGCCACCCTTGTGGGCGCGGTGCT
CTTTGTGCTCTTGCCCTTTCTGATCATCGGCTACCACGAGTTCTACCGCGGGTTGGTCCCGCAAC
CACTGCCTCGAATCCCGTTGCGATTCGATAAAACAGAGGCGATCAGCTTGGATGTCAAGGGGCCC
CGGCTGCCAGCACGCCACTACAACTTCGACCCCATGCTCAACTAC
Found at i:137969 original size:18 final size:20
Alignment explanation
Indices: 137938--137977 Score: 57
Period size: 18 Copynumber: 2.1 Consensus size: 20
137928 TTTCACAACC
137938 ACAACACACAACCACACCAA
1 ACAACACACAACCACACCAA
*
137958 ACAAC-CAC-ACCACACTAA
1 ACAACACACAACCACACCAA
137976 AC
1 AC
137978 TCCATTGTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 11 0.58
19 3 0.16
20 5 0.26
ACGTcount: A:0.53, C:0.45, G:0.00, T:0.03
Consensus pattern (20 bp):
ACAACACACAACCACACCAA
Left flanking sequence: Indices 137438 -- 137937
GACGGGGTTAGACGCCATGGTGATCATGGCGGGGTAGATGTAACAACATGACGGACTTACGTGAA
TACGGCTAGGACTAATAGAGATATGAATGAGTAAAGGGGAAGTAGAAGAGTCGTGTGGGTGGTGG
GTGATGCGAGGGGGATGATAGATAAGATAAGGAGGGTATGGTGGGTAGGTGGGGAATTGAGGCGG
GTGAGTAATTGAGATGTGCGAGAATTGAAGTGGGCGAGTATGCTGGTTGAGTAATATAGCTGGGT
GAGTAATAGGTGAGTGATTGGTGCTCAAGTGAGTGAAATCCACGGTGGACAAGTTGGAATTCTAA
TGTAGGCATACGTAAGCTAAAGTACTTGGCGAAGGGTGAAAGGAGGGGTAGAGAGAGGGGTAGAG
TGGTGGAAAAAACCGCGAATAGGAGTAGTGAAGGGATACGGAAGATGAAATGGTTTAAAAACAAC
AGGGGTAGAATGGGCGATCCTGTTATCTCACCACATTTCACAACC
Right flanking sequence: Indices 137978 -- 138477
TCCATTGTTACTATCCCCGCCATCACCCCTACAACCACCACCCATACAACCGCCACCCCTACTAT
CACCACTGCCAACCTCCACCACCACCCACTCACCACTTATTGCCACCCATTCCTCCCCACTCCAT
CCCTACATACCCTTTTTATCCCACCCACTCTCGTCTAACCCGTTTTTGGAAAACCTGCACAGCGC
GCTTCCCCACAACGGTTTTCGTCACATGGTGCAAACACCACCACCATGCTTAAGATCAACTTCCA
GGTGCCGTTGGTGGTGACGCGCCGGACACTATACATCGCCACCCTTGTGGGCGCGGTGCTCTTTG
TGCTCTTGCCCTTTCTGATCATCGGCTACCACGAGTTCTACCGCGGGTTGGTCCCGCAACCACTG
CCTCGAATCCCGTTGCGATTCGATAAAACAGAGGCGATCAGCTTGGATGTCAAGGGGCCCCGGCT
GCCAGCACGCCACTACAACTTCGACCCCATGCTCAACTACCAGTG
Found at i:138048 original size:15 final size:15
Alignment explanation
Indices: 138001--138039 Score: 60
Period size: 15 Copynumber: 2.6 Consensus size: 15
137991 TCCCCGCCAT
138001 CACCCCTACAACCAC
1 CACCCCTACAACCAC
* *
138016 CACCCATACAACCGC
1 CACCCCTACAACCAC
138031 CACCCCTAC
1 CACCCCTAC
138040 TATCACCACT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.31, C:0.59, G:0.03, T:0.08
Consensus pattern (15 bp):
CACCCCTACAACCAC
Left flanking sequence: Indices 137501 -- 138000
AATACGGCTAGGACTAATAGAGATATGAATGAGTAAAGGGGAAGTAGAAGAGTCGTGTGGGTGGT
GGGTGATGCGAGGGGGATGATAGATAAGATAAGGAGGGTATGGTGGGTAGGTGGGGAATTGAGGC
GGGTGAGTAATTGAGATGTGCGAGAATTGAAGTGGGCGAGTATGCTGGTTGAGTAATATAGCTGG
GTGAGTAATAGGTGAGTGATTGGTGCTCAAGTGAGTGAAATCCACGGTGGACAAGTTGGAATTCT
AATGTAGGCATACGTAAGCTAAAGTACTTGGCGAAGGGTGAAAGGAGGGGTAGAGAGAGGGGTAG
AGTGGTGGAAAAAACCGCGAATAGGAGTAGTGAAGGGATACGGAAGATGAAATGGTTTAAAAACA
ACAGGGGTAGAATGGGCGATCCTGTTATCTCACCACATTTCACAACCACAACACACAACCACACC
AAACAACCACACCACACTAAACTCCATTGTTACTATCCCCGCCAT
Right flanking sequence: Indices 138040 -- 138539
TATCACCACTGCCAACCTCCACCACCACCCACTCACCACTTATTGCCACCCATTCCTCCCCACTC
CATCCCTACATACCCTTTTTATCCCACCCACTCTCGTCTAACCCGTTTTTGGAAAACCTGCACAG
CGCGCTTCCCCACAACGGTTTTCGTCACATGGTGCAAACACCACCACCATGCTTAAGATCAACTT
CCAGGTGCCGTTGGTGGTGACGCGCCGGACACTATACATCGCCACCCTTGTGGGCGCGGTGCTCT
TTGTGCTCTTGCCCTTTCTGATCATCGGCTACCACGAGTTCTACCGCGGGTTGGTCCCGCAACCA
CTGCCTCGAATCCCGTTGCGATTCGATAAAACAGAGGCGATCAGCTTGGATGTCAAGGGGCCCCG
GCTGCCAGCACGCCACTACAACTTCGACCCCATGCTCAACTACCAGTGGAACATTCACTTGGAGG
TGATTTGCGGTGATCTGTTGCGGGGCAAAATCGTCCACTTGGACT
Found at i:139130 original size:19 final size:19
Alignment explanation
Indices: 139106--139167 Score: 79
Period size: 19 Copynumber: 3.3 Consensus size: 19
139096 ACACCGGCTC
*
139106 GGCTGTATTGTGTCGTCTT
1 GGCTGTATTGTATCGTCTT
* *
139125 GGCTGTGTTATATCGTCTT
1 GGCTGTATTGTATCGTCTT
* *
139144 GGCTGTCTTGCATCGTCTT
1 GGCTGTATTGTATCGTCTT
139163 GGCTG
1 GGCTG
139168 CGCCATCTTG
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 37 1.00
ACGTcount: A:0.06, C:0.19, G:0.31, T:0.44
Consensus pattern (19 bp):
GGCTGTATTGTATCGTCTT
Left flanking sequence: Indices 138606 -- 139105
TCATCCACAACCACAACAACTGGTTTGTGCCGTACAATTTGCGGTTCTGGGTGCCTCCGATCACC
GTGGACATCACCCGGGCGGTGGCAGTGGAGCTCAACCACTACGTGATGCCCGGGCGCGTGCTCAC
GGACCAGGGCGAGTACACCATCCGCGTCGAGCCCACCCCCGGGCTCATTATCGACAACCACGCGC
TGTACCTCGACTTCCAGATCCACTTCCTGGGGTTCCGCTACTACTTGCGCAAGCACTTTATCCTG
TGTGCGGTGATTGGCATAGGTACGTTCTGGGCCGTCAACCTGTTTATCGCAGTGCTGACGGCGTT
GGTGGTGCTTGGCTTTCTGAACGACGAAACGCGCCCGGTGCGCTACCAGGACGACGACGCTCGCG
ACTAGCATTCGAGAACACTCGTGACTTAATAGGACAATAAATGAATAGAGAATAGCGGTGACTGT
TTCTTGGCTATCTAGGCTCTTTCGGCTCGGTGCTGACACCGGCTC
Right flanking sequence: Indices 139168 -- 139667
CGCCATCTTGGCTGTTTTGATCTGCGTCTTCGATGGCTGCAAATCGGGCCAAGATTGCCTATTTG
GGCCATGGTAATACGGGTGTCATTGAGACCGCCCCCCGTCAGTGTTGGCAATGGCACATATATAG
ACCGCCTAAAATAAGCTCATACTTCCAACCGGGAAGTTTATTACATAATTGCCGCCATGAGTGGC
TAGACTTCGCAATGTGCGTCCGGTGGGCGAAGTAGCCTGCAAAACCCAGAGTGACGAGCGCGAGA
CACCATTGTCACTGTTTTTGTCGGCGAGGACAATGGCTAGACGAACGAAGGAACTGGTTGACTGG
CAAACGCAGCCAATTGAGCGTTGCTAGTAGCCATCCAATGCATGATCCGGATGACGCACCGCGGT
AGCGAAGACGGCCGAACACAAAGAGACCCATCAGAGACCCCAAGAGTCGTGTGTAGTCTACTGGA
CAAAGCTAACCAGCCCAATCCCTCTCCCACCACCCAATTCCACCC
Found at i:143959 original size:21 final size:21
Alignment explanation
Indices: 143886--143940 Score: 110
Period size: 21 Copynumber: 2.6 Consensus size: 21
143876 AGAGGTGGAG
143886 GCCTTCTTTTCGGCGTCGGTA
1 GCCTTCTTTTCGGCGTCGGTA
143907 GCCTTCTTTTCGGCGTCGGTA
1 GCCTTCTTTTCGGCGTCGGTA
143928 GCCTTCTTTTCGG
1 GCCTTCTTTTCGG
143941 TCTCGGCAAG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 34 1.00
ACGTcount: A:0.04, C:0.29, G:0.27, T:0.40
Consensus pattern (21 bp):
GCCTTCTTTTCGGCGTCGGTA
Left flanking sequence: Indices 143386 -- 143885
ATTAGGGCACAGGGGAGGCTTGTGTCCAATCACTGGCAGGCGCCATTGTTTGCAGCCGCTGTCGT
CTACGGGCCTCGTAGCTGGCCAATATACGAGCAAATAAGCTCTGGTATGCAATATTCTCATTATC
ACGGCCCGCGTGGGCGTCATATATACATTAGGCCAGCTCGGGCTCGGGAGTACGCTTCTCGAGGA
GCGCCGCGTACAACTTCTTGACCTTCTCGTAGTCGGCCTCGGCGGTGGCGAGCTTGGTCTTGAGC
TCGTCGGCGTCGGCTGCCGCGGCGGCCTTCTTTTCCGCCTCGGCGAGCTTCTCCTTCAACTCGGA
CGATTCAGCAGCCTTCTTCTCAGCCTCGGTGGCCTTGTTTTCGGCGTCAGTAGCCTTCTTTTCGG
CCGCAGCAAGCTTCTTCTCCAACTCGGACGAGGCAGAAGCCTTCTTTTCGGCCTCAGCGAGCTTC
TTCTCCAAGTCCTTCGTCTTGGTCTCAGCGTCGGCAGAGGTGGAG
Right flanking sequence: Indices 143941 -- 144440
TCTCGGCAAGCTTCTTTTCCAAGTCCTTGACCTTAGACTCGGCGTCAGCACCAGCGGAAGCCTTC
TTTTCAGCCTCGGTAGCCTTTTTCTCAGCGTCAGTGACCTTTTTCTCAGCCTCAGTGGCCTTCTT
CTCAGCCTCAGTGGCCTTCTTCTCAGCGTCAGCAAGCTTCTTCTCCAACTCCTTGGCCTTGGATT
CAGCCTCGGCACCAGAAGAGGCCTTCTTTTCAGCTTCGGAAGCCTTCTTCTCAGCCTCAGTAGCC
TTCTTTTCGGCCTCGGCAAGCTTCTTCTCCAATTCCTTAGCCTTGGATTCAGCCTCAGCGCCAGT
AGATGCCTTCTTCTCGGCCTCTGCAGCCTTCTTCTCGGCCTCGGTGGCCTTCTTTTCGGCCTCGG
AAACCTTCTTTTCAGCCTCAGTGGCCTTCTTTTCCAACTCCTTGGCCTTGGATTCGGCCTCAACA
CCAGCCGAAGCCTTCTTCTCGGCCTCGGAAACCTTCTTTTCGGCC
Found at i:143986 original size:114 final size:114
Alignment explanation
Indices: 143813--144025 Score: 268
Period size: 114 Copynumber: 1.9 Consensus size: 114
143803 ACGAGGCAGA
* * * * *
143813 AGCCTTCTTTTCGGCCTCAGCGAGCTTCTTCTCCAAGTCCTTCGTCTTGGTCTCAGCGTCGGCA-
1 AGCCTTCTTTTCGGCCTCAGCAAGCTTCTTCTCCAAGTCCTTCGCCTTAGACTCAGCGTCAGCAC
* * * * *
143877 GAGGTGGAGGCCTTCTTTTCGGCGTCGGTAGCCTTCTTTTCGGCGTCGGT
66 CA-GCGGAAGCCTTCTTTTCAGCCTCGGTAGCCTTCTTTTCGGCGTCGGT
* * * *
143927 AGCCTTCTTTTCGGTCTCGGCAAGCTTCTTTTCCAAGTCCTT-GACCTTAGACTCGGCGTCAGCA
1 AGCCTTCTTTTCGGCCTCAGCAAGCTTCTTCTCCAAGTCCTTCG-CCTTAGACTCAGCGTCAGCA
143991 CCAGCGGAAGCCTTCTTTTCAGCCTCGGTAGCCTT
65 CCAGCGGAAGCCTTCTTTTCAGCCTCGGTAGCCTT
144026 TTTCTCAGCG
Statistics
Matches: 83, Mismatches: 14, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
113 1 0.01
114 81 0.98
115 1 0.01
ACGTcount: A:0.12, C:0.31, G:0.25, T:0.32
Consensus pattern (114 bp):
AGCCTTCTTTTCGGCCTCAGCAAGCTTCTTCTCCAAGTCCTTCGCCTTAGACTCAGCGTCAGCAC
CAGCGGAAGCCTTCTTTTCAGCCTCGGTAGCCTTCTTTTCGGCGTCGGT
Left flanking sequence: Indices 143313 -- 143812
CGGCGATTGGGCCCTGGGTGTGAGCACACGCACCGCAACGGTCTTTATTTACATAGCGGTAGACG
CACCCCTAATTAGGGCACAGGGGAGGCTTGTGTCCAATCACTGGCAGGCGCCATTGTTTGCAGCC
GCTGTCGTCTACGGGCCTCGTAGCTGGCCAATATACGAGCAAATAAGCTCTGGTATGCAATATTC
TCATTATCACGGCCCGCGTGGGCGTCATATATACATTAGGCCAGCTCGGGCTCGGGAGTACGCTT
CTCGAGGAGCGCCGCGTACAACTTCTTGACCTTCTCGTAGTCGGCCTCGGCGGTGGCGAGCTTGG
TCTTGAGCTCGTCGGCGTCGGCTGCCGCGGCGGCCTTCTTTTCCGCCTCGGCGAGCTTCTCCTTC
AACTCGGACGATTCAGCAGCCTTCTTCTCAGCCTCGGTGGCCTTGTTTTCGGCGTCAGTAGCCTT
CTTTTCGGCCGCAGCAAGCTTCTTCTCCAACTCGGACGAGGCAGA
Right flanking sequence: Indices 144026 -- 144525
TTTCTCAGCGTCAGTGACCTTTTTCTCAGCCTCAGTGGCCTTCTTCTCAGCCTCAGTGGCCTTCT
TCTCAGCGTCAGCAAGCTTCTTCTCCAACTCCTTGGCCTTGGATTCAGCCTCGGCACCAGAAGAG
GCCTTCTTTTCAGCTTCGGAAGCCTTCTTCTCAGCCTCAGTAGCCTTCTTTTCGGCCTCGGCAAG
CTTCTTCTCCAATTCCTTAGCCTTGGATTCAGCCTCAGCGCCAGTAGATGCCTTCTTCTCGGCCT
CTGCAGCCTTCTTCTCGGCCTCGGTGGCCTTCTTTTCGGCCTCGGAAACCTTCTTTTCAGCCTCA
GTGGCCTTCTTTTCCAACTCCTTGGCCTTGGATTCGGCCTCAACACCAGCCGAAGCCTTCTTCTC
GGCCTCGGAAACCTTCTTTTCGGCCTCGGAAACCTTCTTTTCAGCCTCAGTGGCCTTCTTCTCGG
CATCGGAAACCTTCAGCTCGGCGTCCTTAGCCTTCTTCTCGGCGT
Found at i:144024 original size:21 final size:21
Alignment explanation
Indices: 143999--144102 Score: 97
Period size: 21 Copynumber: 5.0 Consensus size: 21
143989 CACCAGCGGA
*
143999 AGCCTTCTTTTCAGCCTCGGT
1 AGCCTTCTTTTCAGCCTCAGT
*
144020 AGCCTT-TTTCTCAGCGTCAGT
1 AGCCTTCTTT-TCAGCCTCAGT
144041 -GACCTT-TTTCTCAGCCTCAGT
1 AG-CCTTCTTT-TCAGCCTCAGT
* *
144062 GGCCTTCTTCTCAGCCTCAGT
1 AGCCTTCTTTTCAGCCTCAGT
* * *
144083 GGCCTTCTTCTCAGCGTCAG
1 AGCCTTCTTTTCAGCCTCAG
144103 CAAGCTTCTT
Statistics
Matches: 74, Mismatches: 5, Indels: 8
0.85 0.06 0.09
Matches are distributed among these distances:
20 4 0.05
21 67 0.91
22 3 0.04
ACGTcount: A:0.12, C:0.34, G:0.19, T:0.36
Consensus pattern (21 bp):
AGCCTTCTTTTCAGCCTCAGT
Left flanking sequence: Indices 143499 -- 143998
GCAATATTCTCATTATCACGGCCCGCGTGGGCGTCATATATACATTAGGCCAGCTCGGGCTCGGG
AGTACGCTTCTCGAGGAGCGCCGCGTACAACTTCTTGACCTTCTCGTAGTCGGCCTCGGCGGTGG
CGAGCTTGGTCTTGAGCTCGTCGGCGTCGGCTGCCGCGGCGGCCTTCTTTTCCGCCTCGGCGAGC
TTCTCCTTCAACTCGGACGATTCAGCAGCCTTCTTCTCAGCCTCGGTGGCCTTGTTTTCGGCGTC
AGTAGCCTTCTTTTCGGCCGCAGCAAGCTTCTTCTCCAACTCGGACGAGGCAGAAGCCTTCTTTT
CGGCCTCAGCGAGCTTCTTCTCCAAGTCCTTCGTCTTGGTCTCAGCGTCGGCAGAGGTGGAGGCC
TTCTTTTCGGCGTCGGTAGCCTTCTTTTCGGCGTCGGTAGCCTTCTTTTCGGTCTCGGCAAGCTT
CTTTTCCAAGTCCTTGACCTTAGACTCGGCGTCAGCACCAGCGGA
Right flanking sequence: Indices 144103 -- 144602
CAAGCTTCTTCTCCAACTCCTTGGCCTTGGATTCAGCCTCGGCACCAGAAGAGGCCTTCTTTTCA
GCTTCGGAAGCCTTCTTCTCAGCCTCAGTAGCCTTCTTTTCGGCCTCGGCAAGCTTCTTCTCCAA
TTCCTTAGCCTTGGATTCAGCCTCAGCGCCAGTAGATGCCTTCTTCTCGGCCTCTGCAGCCTTCT
TCTCGGCCTCGGTGGCCTTCTTTTCGGCCTCGGAAACCTTCTTTTCAGCCTCAGTGGCCTTCTTT
TCCAACTCCTTGGCCTTGGATTCGGCCTCAACACCAGCCGAAGCCTTCTTCTCGGCCTCGGAAAC
CTTCTTTTCGGCCTCGGAAACCTTCTTTTCAGCCTCAGTGGCCTTCTTCTCGGCATCGGAAACCT
TCAGCTCGGCGTCCTTAGCCTTCTTCTCGGCGTCCGCCACCTTCTTCTCCGCCTCGTCGGCCTTC
TTCTCCGCATCCGACGCCTTCTTGTTCGCCTCAAACAACTTCTTC
Found at i:144067 original size:42 final size:42
Alignment explanation
Indices: 144001--144115 Score: 126
Period size: 42 Copynumber: 2.7 Consensus size: 42
143991 CCAGCGGAAG
* * *
144001 CCTTCTTT-TCAGCCTCGGTAGCCTTTTTCTCAGCGTCAGTGA
1 CCTT-TTTCTCAGCCTCAGTAGCCTTCTTCTCAGCCTCAGTGA
* *
144043 CCTTTTTCTCAGCCTCAGTGGCCTTCTTCTCAGCCTCAGTGG
1 CCTTTTTCTCAGCCTCAGTAGCCTTCTTCTCAGCCTCAGTGA
* * *
144085 CCTTCTTCTCAGCGTCAGCAAG-CTTCTTCTC
1 CCTTTTTCTCAGCCTCAG-TAGCCTTCTTCTC
144116 CAACTCCTTG
Statistics
Matches: 62, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
41 3 0.05
42 58 0.94
43 1 0.02
ACGTcount: A:0.11, C:0.35, G:0.17, T:0.37
Consensus pattern (42 bp):
CCTTTTTCTCAGCCTCAGTAGCCTTCTTCTCAGCCTCAGTGA
Left flanking sequence: Indices 143501 -- 144000
AATATTCTCATTATCACGGCCCGCGTGGGCGTCATATATACATTAGGCCAGCTCGGGCTCGGGAG
TACGCTTCTCGAGGAGCGCCGCGTACAACTTCTTGACCTTCTCGTAGTCGGCCTCGGCGGTGGCG
AGCTTGGTCTTGAGCTCGTCGGCGTCGGCTGCCGCGGCGGCCTTCTTTTCCGCCTCGGCGAGCTT
CTCCTTCAACTCGGACGATTCAGCAGCCTTCTTCTCAGCCTCGGTGGCCTTGTTTTCGGCGTCAG
TAGCCTTCTTTTCGGCCGCAGCAAGCTTCTTCTCCAACTCGGACGAGGCAGAAGCCTTCTTTTCG
GCCTCAGCGAGCTTCTTCTCCAAGTCCTTCGTCTTGGTCTCAGCGTCGGCAGAGGTGGAGGCCTT
CTTTTCGGCGTCGGTAGCCTTCTTTTCGGCGTCGGTAGCCTTCTTTTCGGTCTCGGCAAGCTTCT
TTTCCAAGTCCTTGACCTTAGACTCGGCGTCAGCACCAGCGGAAG
Right flanking sequence: Indices 144116 -- 144615
CAACTCCTTGGCCTTGGATTCAGCCTCGGCACCAGAAGAGGCCTTCTTTTCAGCTTCGGAAGCCT
TCTTCTCAGCCTCAGTAGCCTTCTTTTCGGCCTCGGCAAGCTTCTTCTCCAATTCCTTAGCCTTG
GATTCAGCCTCAGCGCCAGTAGATGCCTTCTTCTCGGCCTCTGCAGCCTTCTTCTCGGCCTCGGT
GGCCTTCTTTTCGGCCTCGGAAACCTTCTTTTCAGCCTCAGTGGCCTTCTTTTCCAACTCCTTGG
CCTTGGATTCGGCCTCAACACCAGCCGAAGCCTTCTTCTCGGCCTCGGAAACCTTCTTTTCGGCC
TCGGAAACCTTCTTTTCAGCCTCAGTGGCCTTCTTCTCGGCATCGGAAACCTTCAGCTCGGCGTC
CTTAGCCTTCTTCTCGGCGTCCGCCACCTTCTTCTCCGCCTCGTCGGCCTTCTTCTCCGCATCCG
ACGCCTTCTTGTTCGCCTCAAACAACTTCTTCTCAGCATCGGTGG
Found at i:144180 original size:21 final size:21
Alignment explanation
Indices: 144156--144226 Score: 81
Period size: 21 Copynumber: 3.4 Consensus size: 21
144146 ACCAGAAGAG
*
144156 GCCTTCTTTTCAGCTTCGGAA
1 GCCTTCTTTTCAGCCTCGGAA
* * *
144177 GCCTTCTTCTCAGCCTCAGTA
1 GCCTTCTTTTCAGCCTCGGAA
*
144198 GCCTTCTTTTCGGCCTCGGCAA
1 GCCTTCTTTTCAGCCTCGG-AA
144220 G-CTTCTT
1 GCCTTCTT
144227 CTCCAATTCC
Statistics
Matches: 41, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
21 39 0.95
22 2 0.05
ACGTcount: A:0.11, C:0.34, G:0.18, T:0.37
Consensus pattern (21 bp):
GCCTTCTTTTCAGCCTCGGAA
Left flanking sequence: Indices 143656 -- 144155
CGGCTGCCGCGGCGGCCTTCTTTTCCGCCTCGGCGAGCTTCTCCTTCAACTCGGACGATTCAGCA
GCCTTCTTCTCAGCCTCGGTGGCCTTGTTTTCGGCGTCAGTAGCCTTCTTTTCGGCCGCAGCAAG
CTTCTTCTCCAACTCGGACGAGGCAGAAGCCTTCTTTTCGGCCTCAGCGAGCTTCTTCTCCAAGT
CCTTCGTCTTGGTCTCAGCGTCGGCAGAGGTGGAGGCCTTCTTTTCGGCGTCGGTAGCCTTCTTT
TCGGCGTCGGTAGCCTTCTTTTCGGTCTCGGCAAGCTTCTTTTCCAAGTCCTTGACCTTAGACTC
GGCGTCAGCACCAGCGGAAGCCTTCTTTTCAGCCTCGGTAGCCTTTTTCTCAGCGTCAGTGACCT
TTTTCTCAGCCTCAGTGGCCTTCTTCTCAGCCTCAGTGGCCTTCTTCTCAGCGTCAGCAAGCTTC
TTCTCCAACTCCTTGGCCTTGGATTCAGCCTCGGCACCAGAAGAG
Right flanking sequence: Indices 144227 -- 144726
CTCCAATTCCTTAGCCTTGGATTCAGCCTCAGCGCCAGTAGATGCCTTCTTCTCGGCCTCTGCAG
CCTTCTTCTCGGCCTCGGTGGCCTTCTTTTCGGCCTCGGAAACCTTCTTTTCAGCCTCAGTGGCC
TTCTTTTCCAACTCCTTGGCCTTGGATTCGGCCTCAACACCAGCCGAAGCCTTCTTCTCGGCCTC
GGAAACCTTCTTTTCGGCCTCGGAAACCTTCTTTTCAGCCTCAGTGGCCTTCTTCTCGGCATCGG
AAACCTTCAGCTCGGCGTCCTTAGCCTTCTTCTCGGCGTCCGCCACCTTCTTCTCCGCCTCGTCG
GCCTTCTTCTCCGCATCCGACGCCTTCTTGTTCGCCTCAAACAACTTCTTCTCAGCATCGGTGGC
CTTCTTCTCCGCCGCAGCCACCTTGTCCTTGGCGTCGTCCACCTGCTTCGCGGTCTCCTCGGCCT
TGGCCTTGGCCGCGGTGGCCTCGTCAAGTTTCTTCTGCACCAGCT
Found at i:144201 original size:270 final size:270
Alignment explanation
Indices: 143814--144361 Score: 636
Period size: 270 Copynumber: 2.0 Consensus size: 270
143804 CGAGGCAGAA
* * * * * * *
143814 GCCTTCTTTTCGGCCTCAGCGAGCTTCTTCTCCAAGTCCTTCGTCTTGGTCTCAGCGTCGGCAGA
1 GCCTTCTTCTCAGCCTCAGCAAGCTTCTTCTCCAACTCCTTCGCCTTGGTCTCAGCCTCGGCACA
** * * * * * * *
143879 GGTGGAGGCCTTCTTTTCGGCGTCGGTAGCCTTCTTTTCGGCGTCGGTAGCCTTCTTTTCGGTCT
66 GGAAGAGGCCTTCTTTTCAGCGTCGGAAGCCTTCTTCTCAGCCTCAGTAGCCTTCTTTTCGGCCT
* * * *
143944 CGGCAAGCTTCTTTTCCAAGTCCTT-GACCTTAGACTCGGCGTCAGCACCAGCGGAAGCCTTCTT
131 CGGCAAGCTTCTTCTCCAAGTCCTTAG-CCTTAGACTCAGCCTCAGCACCAGCAGAAGCCTTCTT
* * * * ***
144008 TTCAGCCTCGGTAGCCTTTTTCTCAGCGTCAGTGACCTT-TTTCTCAGCCTCAGTGGCCTTCTTC
195 CTCAGCCTCGGCAGCCTTCTTCTCAGCCTCAGTGACCTTCTTT-TCAGCCTCAGAAACCTTCTTC
144072 TCAGCCTCAGTG
259 TCAGCCTCAGTG
* *
144084 GCCTTCTTCTCAGCGTCAGCAAGCTTCTTCTCCAACTCCTTGGCCTTGGAT-TCAGCCTCGGCAC
1 GCCTTCTTCTCAGCCTCAGCAAGCTTCTTCTCCAACTCCTTCGCCTTGG-TCTCAGCCTCGGCA-
*
144148 CA-GAAGAGGCCTTCTTTTCAGCTTCGGAAGCCTTCTTCTCAGCCTCAGTAGCCTTCTTTTCGGC
64 CAGGAAGAGGCCTTCTTTTCAGCGTCGGAAGCCTTCTTCTCAGCCTCAGTAGCCTTCTTTTCGGC
* * * * * *
144212 CTCGGCAAGCTTCTTCTCCAATTCCTTAGCCTTGGATTCAGCCTCAGCGCCAGTAGATGCCTTCT
129 CTCGGCAAGCTTCTTCTCCAAGTCCTTAGCCTTAGACTCAGCCTCAGCACCAGCAGAAGCCTTCT
* * * * * * * *
144277 TCTCGGCCTCTGCAGCCTTCTTCTCGGCCTCGGTGGCCTTCTTTTCGGCCTCGGAAACCTTCTTT
194 TCTCAGCCTCGGCAGCCTTCTTCTCAGCCTCAGTGACCTTCTTTTCAGCCTCAGAAACCTTCTTC
144342 TCAGCCTCAGTG
259 TCAGCCTCAGTG
144354 GCCTTCTT
1 GCCTTCTT
144362 TTCCAACTCC
Statistics
Matches: 230, Mismatches: 44, Indels: 8
0.82 0.16 0.03
Matches are distributed among these distances:
270 224 0.97
271 6 0.03
ACGTcount: A:0.12, C:0.33, G:0.22, T:0.33
Consensus pattern (270 bp):
GCCTTCTTCTCAGCCTCAGCAAGCTTCTTCTCCAACTCCTTCGCCTTGGTCTCAGCCTCGGCACA
GGAAGAGGCCTTCTTTTCAGCGTCGGAAGCCTTCTTCTCAGCCTCAGTAGCCTTCTTTTCGGCCT
CGGCAAGCTTCTTCTCCAAGTCCTTAGCCTTAGACTCAGCCTCAGCACCAGCAGAAGCCTTCTTC
TCAGCCTCGGCAGCCTTCTTCTCAGCCTCAGTGACCTTCTTTTCAGCCTCAGAAACCTTCTTCTC
AGCCTCAGTG
Left flanking sequence: Indices 143314 -- 143813
GGCGATTGGGCCCTGGGTGTGAGCACACGCACCGCAACGGTCTTTATTTACATAGCGGTAGACGC
ACCCCTAATTAGGGCACAGGGGAGGCTTGTGTCCAATCACTGGCAGGCGCCATTGTTTGCAGCCG
CTGTCGTCTACGGGCCTCGTAGCTGGCCAATATACGAGCAAATAAGCTCTGGTATGCAATATTCT
CATTATCACGGCCCGCGTGGGCGTCATATATACATTAGGCCAGCTCGGGCTCGGGAGTACGCTTC
TCGAGGAGCGCCGCGTACAACTTCTTGACCTTCTCGTAGTCGGCCTCGGCGGTGGCGAGCTTGGT
CTTGAGCTCGTCGGCGTCGGCTGCCGCGGCGGCCTTCTTTTCCGCCTCGGCGAGCTTCTCCTTCA
ACTCGGACGATTCAGCAGCCTTCTTCTCAGCCTCGGTGGCCTTGTTTTCGGCGTCAGTAGCCTTC
TTTTCGGCCGCAGCAAGCTTCTTCTCCAACTCGGACGAGGCAGAA
Right flanking sequence: Indices 144362 -- 144861
TTCCAACTCCTTGGCCTTGGATTCGGCCTCAACACCAGCCGAAGCCTTCTTCTCGGCCTCGGAAA
CCTTCTTTTCGGCCTCGGAAACCTTCTTTTCAGCCTCAGTGGCCTTCTTCTCGGCATCGGAAACC
TTCAGCTCGGCGTCCTTAGCCTTCTTCTCGGCGTCCGCCACCTTCTTCTCCGCCTCGTCGGCCTT
CTTCTCCGCATCCGACGCCTTCTTGTTCGCCTCAAACAACTTCTTCTCAGCATCGGTGGCCTTCT
TCTCCGCCGCAGCCACCTTGTCCTTGGCGTCGTCCACCTGCTTCGCGGTCTCCTCGGCCTTGGCC
TTGGCCGCGGTGGCCTCGTCAAGTTTCTTCTGCACCAGCTCGACCTCGATTTTGACCTCGGCCTC
CTTGGCAGCCACCGCCTTCTTGAGCTCGGTCTCAGCAGCATCCACCTGCTTCTGCAACTCCTCCT
GCTTGGCGCTGGCAGCCTCGAGCTCCTTCTTGGCCTTGTCGGCAT
Found at i:144214 original size:156 final size:155
Alignment explanation
Indices: 143886--144214 Score: 365
Period size: 156 Copynumber: 2.1 Consensus size: 155
143876 AGAGGTGGAG
* * * * * * * * *
143886 GCCTTCTTTTCGGCGTCGGTAGCCTTCTTTTCGGCGTCGGTAGCCTTCTTTTCGGTCTCGGCAAG
1 GCCTTCTTTTCGGCCTCAGTAGCCTTCTTCTCAGCCTCAGTAGCCTTCTTCTCAGTCTCAGCAAG
* * * * **
143951 CTTCTTTTCCAAGTCCTTGACCTTAGACTCGGCGTCAGCACCAGCGGAAGCCTTCTTTTCAGCCT
66 CTTCTTCTCCAACTCCTTGACCTTAGACTCAGCCTCAGCACCAGAAGAAGCCTTCTTTTCAGCCT
* * *
144016 CGGTAGCCTTTTTCTCAGCGTCAGT
131 CGGAAGCCTTCTTCTCAGCCTCAGT
* * *
144041 GACCTT-TTTCTCAGCCTCAGTGGCCTTCTTCTCAGCCTCAGTGGCCTTCTTCTCAG-CGTCAGC
1 G-CCTTCTTT-TCGGCCTCAGTAGCCTTCTTCTCAGCCTCAGTAGCCTTCTTCTCAGTC-TCAGC
* * * * *
144104 AAGCTTCTTCTCCAACTCCTTGGCCTTGGATTCAGCCTCGGCACCAGAAGAGGCCTTCTTTTCAG
63 AAGCTTCTTCTCCAACTCCTTGACCTTAGACTCAGCCTCAGCACCAGAAGAAGCCTTCTTTTCAG
*
144169 CTTCGGAAGCCTTCTTCTCAGCCTCAGT
128 CCTCGGAAGCCTTCTTCTCAGCCTCAGT
144197 AGCCTTCTTTTCGGCCTC
1 -GCCTTCTTTTCGGCCTC
144215 GGCAAGCTTC
Statistics
Matches: 141, Mismatches: 28, Indels: 9
0.79 0.16 0.05
Matches are distributed among these distances:
155 5 0.04
156 132 0.94
157 4 0.03
ACGTcount: A:0.13, C:0.33, G:0.21, T:0.33
Consensus pattern (155 bp):
GCCTTCTTTTCGGCCTCAGTAGCCTTCTTCTCAGCCTCAGTAGCCTTCTTCTCAGTCTCAGCAAG
CTTCTTCTCCAACTCCTTGACCTTAGACTCAGCCTCAGCACCAGAAGAAGCCTTCTTTTCAGCCT
CGGAAGCCTTCTTCTCAGCCTCAGT
Left flanking sequence: Indices 143386 -- 143885
ATTAGGGCACAGGGGAGGCTTGTGTCCAATCACTGGCAGGCGCCATTGTTTGCAGCCGCTGTCGT
CTACGGGCCTCGTAGCTGGCCAATATACGAGCAAATAAGCTCTGGTATGCAATATTCTCATTATC
ACGGCCCGCGTGGGCGTCATATATACATTAGGCCAGCTCGGGCTCGGGAGTACGCTTCTCGAGGA
GCGCCGCGTACAACTTCTTGACCTTCTCGTAGTCGGCCTCGGCGGTGGCGAGCTTGGTCTTGAGC
TCGTCGGCGTCGGCTGCCGCGGCGGCCTTCTTTTCCGCCTCGGCGAGCTTCTCCTTCAACTCGGA
CGATTCAGCAGCCTTCTTCTCAGCCTCGGTGGCCTTGTTTTCGGCGTCAGTAGCCTTCTTTTCGG
CCGCAGCAAGCTTCTTCTCCAACTCGGACGAGGCAGAAGCCTTCTTTTCGGCCTCAGCGAGCTTC
TTCTCCAAGTCCTTCGTCTTGGTCTCAGCGTCGGCAGAGGTGGAG
Right flanking sequence: Indices 144215 -- 144714
GGCAAGCTTCTTCTCCAATTCCTTAGCCTTGGATTCAGCCTCAGCGCCAGTAGATGCCTTCTTCT
CGGCCTCTGCAGCCTTCTTCTCGGCCTCGGTGGCCTTCTTTTCGGCCTCGGAAACCTTCTTTTCA
GCCTCAGTGGCCTTCTTTTCCAACTCCTTGGCCTTGGATTCGGCCTCAACACCAGCCGAAGCCTT
CTTCTCGGCCTCGGAAACCTTCTTTTCGGCCTCGGAAACCTTCTTTTCAGCCTCAGTGGCCTTCT
TCTCGGCATCGGAAACCTTCAGCTCGGCGTCCTTAGCCTTCTTCTCGGCGTCCGCCACCTTCTTC
TCCGCCTCGTCGGCCTTCTTCTCCGCATCCGACGCCTTCTTGTTCGCCTCAAACAACTTCTTCTC
AGCATCGGTGGCCTTCTTCTCCGCCGCAGCCACCTTGTCCTTGGCGTCGTCCACCTGCTTCGCGG
TCTCCTCGGCCTTGGCCTTGGCCGCGGTGGCCTCGTCAAGTTTCT
Found at i:144295 original size:135 final size:135
Alignment explanation
Indices: 144156--144494 Score: 383
Period size: 135 Copynumber: 2.5 Consensus size: 135
144146 ACCAGAAGAG
* * *
144156 GCCTTCTTTTCAGCTTCGGAAGCCTTCTTCTCAGCCTCAGTAGCCTTCTTTTCGGCCTCGGCAAG
1 GCCTTCTTTTCGGCCTCGGAAGCCTTCTTTTCAGCCTCAGTAGCCTTCTTTTCGGCCTCGG-AAG
* * * * *
144221 -CTTCTTCTCCAATTCCTTAGCCTTGGATTCAGCCTCAGCGCCAGTAGATGCCTTCTTCTCGGCC
65 CCTTCTTCTCCAACTCCTTAGCCTTGGATTCAGCCTCAACACCAGCAGAAGCCTTCTTCTCGGCC
* *
144285 TCTGCA
130 TCGGAA
* ** * * * * * * **
144291 GCCTTCTTCTCGGCCTCGGTGGCCTTCTTTTCGGCCTCGGAAACCTTCTTTTCAGCCTCAGTGGC
1 GCCTTCTTTTCGGCCTCGGAAGCCTTCTTTTCAGCCTCAGTAGCCTTCTTTTCGGCCTCGGAAGC
* * * *
144356 CTTCTTTTCCAACTCCTTGGCCTTGGATTCGGCCTCAACACCAGCCGAAGCCTTCTTCTCGGCCT
66 CTTCTTCTCCAACTCCTTAGCCTTGGATTCAGCCTCAACACCAGCAGAAGCCTTCTTCTCGGCCT
144421 CGGAA
131 CGGAA
* * * * * *
144426 ACCTTCTTTTCGGCCTCGGAAACCTTCTTTTCAGCCTCAGTGGCCTTCTTCTCGGCATCGGAAAC
1 GCCTTCTTTTCGGCCTCGGAAGCCTTCTTTTCAGCCTCAGTAGCCTTCTTTTCGGCCTCGGAAGC
144491 CTTC
66 CTTC
144495 AGCTCGGCGT
Statistics
Matches: 161, Mismatches: 42, Indels: 2
0.79 0.20 0.01
Matches are distributed among these distances:
134 1 0.01
135 160 0.99
ACGTcount: A:0.13, C:0.35, G:0.19, T:0.32
Consensus pattern (135 bp):
GCCTTCTTTTCGGCCTCGGAAGCCTTCTTTTCAGCCTCAGTAGCCTTCTTTTCGGCCTCGGAAGC
CTTCTTCTCCAACTCCTTAGCCTTGGATTCAGCCTCAACACCAGCAGAAGCCTTCTTCTCGGCCT
CGGAA
Left flanking sequence: Indices 143656 -- 144155
CGGCTGCCGCGGCGGCCTTCTTTTCCGCCTCGGCGAGCTTCTCCTTCAACTCGGACGATTCAGCA
GCCTTCTTCTCAGCCTCGGTGGCCTTGTTTTCGGCGTCAGTAGCCTTCTTTTCGGCCGCAGCAAG
CTTCTTCTCCAACTCGGACGAGGCAGAAGCCTTCTTTTCGGCCTCAGCGAGCTTCTTCTCCAAGT
CCTTCGTCTTGGTCTCAGCGTCGGCAGAGGTGGAGGCCTTCTTTTCGGCGTCGGTAGCCTTCTTT
TCGGCGTCGGTAGCCTTCTTTTCGGTCTCGGCAAGCTTCTTTTCCAAGTCCTTGACCTTAGACTC
GGCGTCAGCACCAGCGGAAGCCTTCTTTTCAGCCTCGGTAGCCTTTTTCTCAGCGTCAGTGACCT
TTTTCTCAGCCTCAGTGGCCTTCTTCTCAGCCTCAGTGGCCTTCTTCTCAGCGTCAGCAAGCTTC
TTCTCCAACTCCTTGGCCTTGGATTCAGCCTCGGCACCAGAAGAG
Right flanking sequence: Indices 144495 -- 144994
AGCTCGGCGTCCTTAGCCTTCTTCTCGGCGTCCGCCACCTTCTTCTCCGCCTCGTCGGCCTTCTT
CTCCGCATCCGACGCCTTCTTGTTCGCCTCAAACAACTTCTTCTCAGCATCGGTGGCCTTCTTCT
CCGCCGCAGCCACCTTGTCCTTGGCGTCGTCCACCTGCTTCGCGGTCTCCTCGGCCTTGGCCTTG
GCCGCGGTGGCCTCGTCAAGTTTCTTCTGCACCAGCTCGACCTCGATTTTGACCTCGGCCTCCTT
GGCAGCCACCGCCTTCTTGAGCTCGGTCTCAGCAGCATCCACCTGCTTCTGCAACTCCTCCTGCT
TGGCGCTGGCAGCCTCGAGCTCCTTCTTGGCCTTGTCGGCATCGCCCTTGCTGGTCTCCGCTTGG
GCCTCGGCCTCCTTCACCTTGTTCTCGAGCTCGCTCACCTTGGCCTCAGCCTCCTTAACCTTGGC
CTCGGCCGCGTCCACCTTGGTCTGCAAAGTCTTTTCCGTCTCCGC
Found at i:144329 original size:114 final size:114
Alignment explanation
Indices: 144043--144340 Score: 380
Period size: 114 Copynumber: 2.6 Consensus size: 114
144033 GCGTCAGTGA
* * ** * * * *
144043 CCTTTTTCTCAGCCTCAGTGGCCTTCTTCTCAGCCTCAGTGGCCTTCTTCTCAGCGTCAGCAAGC
1 CCTTCTTCTCAGCCTCGGAAGCCTTCTTCTCAGCCTCAGTGGCCTTCTTTTCGGCCTCGGCAAGC
* *
144108 TTCTTCTCCAACTCCTTGGCCTTGGATTCAGCCTCGGCACCAGAAGAGG
66 TTCTTCTCCAACTCCTTAGCCTTGGATTCAGCCTCAGCACCAGAAGAGG
* * *
144157 CCTTCTTTTCAGCTTCGGAAGCCTTCTTCTCAGCCTCAGTAGCCTTCTTTTCGGCCTCGGCAAGC
1 CCTTCTTCTCAGCCTCGGAAGCCTTCTTCTCAGCCTCAGTGGCCTTCTTTTCGGCCTCGGCAAGC
* * * *
144222 TTCTTCTCCAATTCCTTAGCCTTGGATTCAGCCTCAGCGCCAGTAGATG
66 TTCTTCTCCAACTCCTTAGCCTTGGATTCAGCCTCAGCACCAGAAGAGG
* * * * * * *
144271 CCTTCTTCTCGGCCTCTGCAGCCTTCTTCTCGGCCTCGGTGGCCTTCTTTTCGGCCTCGGAAACC
1 CCTTCTTCTCAGCCTCGGAAGCCTTCTTCTCAGCCTCAGTGGCCTTCTTTTCGGCCTCGGCAAGC
144336 TTCTT
66 TTCTT
144341 TTCAGCCTCA
Statistics
Matches: 157, Mismatches: 27, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
114 157 1.00
ACGTcount: A:0.13, C:0.35, G:0.19, T:0.33
Consensus pattern (114 bp):
CCTTCTTCTCAGCCTCGGAAGCCTTCTTCTCAGCCTCAGTGGCCTTCTTTTCGGCCTCGGCAAGC
TTCTTCTCCAACTCCTTAGCCTTGGATTCAGCCTCAGCACCAGAAGAGG
Left flanking sequence: Indices 143543 -- 144042
TTAGGCCAGCTCGGGCTCGGGAGTACGCTTCTCGAGGAGCGCCGCGTACAACTTCTTGACCTTCT
CGTAGTCGGCCTCGGCGGTGGCGAGCTTGGTCTTGAGCTCGTCGGCGTCGGCTGCCGCGGCGGCC
TTCTTTTCCGCCTCGGCGAGCTTCTCCTTCAACTCGGACGATTCAGCAGCCTTCTTCTCAGCCTC
GGTGGCCTTGTTTTCGGCGTCAGTAGCCTTCTTTTCGGCCGCAGCAAGCTTCTTCTCCAACTCGG
ACGAGGCAGAAGCCTTCTTTTCGGCCTCAGCGAGCTTCTTCTCCAAGTCCTTCGTCTTGGTCTCA
GCGTCGGCAGAGGTGGAGGCCTTCTTTTCGGCGTCGGTAGCCTTCTTTTCGGCGTCGGTAGCCTT
CTTTTCGGTCTCGGCAAGCTTCTTTTCCAAGTCCTTGACCTTAGACTCGGCGTCAGCACCAGCGG
AAGCCTTCTTTTCAGCCTCGGTAGCCTTTTTCTCAGCGTCAGTGA
Right flanking sequence: Indices 144341 -- 144840
TTCAGCCTCAGTGGCCTTCTTTTCCAACTCCTTGGCCTTGGATTCGGCCTCAACACCAGCCGAAG
CCTTCTTCTCGGCCTCGGAAACCTTCTTTTCGGCCTCGGAAACCTTCTTTTCAGCCTCAGTGGCC
TTCTTCTCGGCATCGGAAACCTTCAGCTCGGCGTCCTTAGCCTTCTTCTCGGCGTCCGCCACCTT
CTTCTCCGCCTCGTCGGCCTTCTTCTCCGCATCCGACGCCTTCTTGTTCGCCTCAAACAACTTCT
TCTCAGCATCGGTGGCCTTCTTCTCCGCCGCAGCCACCTTGTCCTTGGCGTCGTCCACCTGCTTC
GCGGTCTCCTCGGCCTTGGCCTTGGCCGCGGTGGCCTCGTCAAGTTTCTTCTGCACCAGCTCGAC
CTCGATTTTGACCTCGGCCTCCTTGGCAGCCACCGCCTTCTTGAGCTCGGTCTCAGCAGCATCCA
CCTGCTTCTGCAACTCCTCCTGCTTGGCGCTGGCAGCCTCGAGCT
Found at i:144358 original size:21 final size:21
Alignment explanation
Indices: 144270--144364 Score: 100
Period size: 21 Copynumber: 4.5 Consensus size: 21
144260 GCCAGTAGAT
* * **
144270 GCCTTCTTCTCGGCCTCTGCA
1 GCCTTCTTTTCGGCCTCGGTG
*
144291 GCCTTCTTCTCGGCCTCGGTG
1 GCCTTCTTTTCGGCCTCGGTG
**
144312 GCCTTCTTTTCGGCCTCGGAA
1 GCCTTCTTTTCGGCCTCGGTG
* * *
144333 ACCTTCTTTTCAGCCTCAGTG
1 GCCTTCTTTTCGGCCTCGGTG
144354 GCCTTCTTTTC
1 GCCTTCTTTTC
144365 CAACTCCTTG
Statistics
Matches: 62, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 62 1.00
ACGTcount: A:0.06, C:0.37, G:0.20, T:0.37
Consensus pattern (21 bp):
GCCTTCTTTTCGGCCTCGGTG
Left flanking sequence: Indices 143770 -- 144269
TTTCGGCCGCAGCAAGCTTCTTCTCCAACTCGGACGAGGCAGAAGCCTTCTTTTCGGCCTCAGCG
AGCTTCTTCTCCAAGTCCTTCGTCTTGGTCTCAGCGTCGGCAGAGGTGGAGGCCTTCTTTTCGGC
GTCGGTAGCCTTCTTTTCGGCGTCGGTAGCCTTCTTTTCGGTCTCGGCAAGCTTCTTTTCCAAGT
CCTTGACCTTAGACTCGGCGTCAGCACCAGCGGAAGCCTTCTTTTCAGCCTCGGTAGCCTTTTTC
TCAGCGTCAGTGACCTTTTTCTCAGCCTCAGTGGCCTTCTTCTCAGCCTCAGTGGCCTTCTTCTC
AGCGTCAGCAAGCTTCTTCTCCAACTCCTTGGCCTTGGATTCAGCCTCGGCACCAGAAGAGGCCT
TCTTTTCAGCTTCGGAAGCCTTCTTCTCAGCCTCAGTAGCCTTCTTTTCGGCCTCGGCAAGCTTC
TTCTCCAATTCCTTAGCCTTGGATTCAGCCTCAGCGCCAGTAGAT
Right flanking sequence: Indices 144365 -- 144864
CAACTCCTTGGCCTTGGATTCGGCCTCAACACCAGCCGAAGCCTTCTTCTCGGCCTCGGAAACCT
TCTTTTCGGCCTCGGAAACCTTCTTTTCAGCCTCAGTGGCCTTCTTCTCGGCATCGGAAACCTTC
AGCTCGGCGTCCTTAGCCTTCTTCTCGGCGTCCGCCACCTTCTTCTCCGCCTCGTCGGCCTTCTT
CTCCGCATCCGACGCCTTCTTGTTCGCCTCAAACAACTTCTTCTCAGCATCGGTGGCCTTCTTCT
CCGCCGCAGCCACCTTGTCCTTGGCGTCGTCCACCTGCTTCGCGGTCTCCTCGGCCTTGGCCTTG
GCCGCGGTGGCCTCGTCAAGTTTCTTCTGCACCAGCTCGACCTCGATTTTGACCTCGGCCTCCTT
GGCAGCCACCGCCTTCTTGAGCTCGGTCTCAGCAGCATCCACCTGCTTCTGCAACTCCTCCTGCT
TGGCGCTGGCAGCCTCGAGCTCCTTCTTGGCCTTGTCGGCATCGC
Found at i:144362 original size:42 final size:42
Alignment explanation
Indices: 144270--144364 Score: 127
Period size: 42 Copynumber: 2.3 Consensus size: 42
144260 GCCAGTAGAT
* * * * * *
144270 GCCTTCTTCTCGGCCTCTGCAGCCTTCTTCTCGGCCTCGGTG
1 GCCTTCTTTTCGGCCTCGGAAACCTTCTTCTCAGCCTCAGTG
*
144312 GCCTTCTTTTCGGCCTCGGAAACCTTCTTTTCAGCCTCAGTG
1 GCCTTCTTTTCGGCCTCGGAAACCTTCTTCTCAGCCTCAGTG
144354 GCCTTCTTTTC
1 GCCTTCTTTTC
144365 CAACTCCTTG
Statistics
Matches: 46, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
42 46 1.00
ACGTcount: A:0.06, C:0.37, G:0.20, T:0.37
Consensus pattern (42 bp):
GCCTTCTTTTCGGCCTCGGAAACCTTCTTCTCAGCCTCAGTG
Left flanking sequence: Indices 143770 -- 144269
TTTCGGCCGCAGCAAGCTTCTTCTCCAACTCGGACGAGGCAGAAGCCTTCTTTTCGGCCTCAGCG
AGCTTCTTCTCCAAGTCCTTCGTCTTGGTCTCAGCGTCGGCAGAGGTGGAGGCCTTCTTTTCGGC
GTCGGTAGCCTTCTTTTCGGCGTCGGTAGCCTTCTTTTCGGTCTCGGCAAGCTTCTTTTCCAAGT
CCTTGACCTTAGACTCGGCGTCAGCACCAGCGGAAGCCTTCTTTTCAGCCTCGGTAGCCTTTTTC
TCAGCGTCAGTGACCTTTTTCTCAGCCTCAGTGGCCTTCTTCTCAGCCTCAGTGGCCTTCTTCTC
AGCGTCAGCAAGCTTCTTCTCCAACTCCTTGGCCTTGGATTCAGCCTCGGCACCAGAAGAGGCCT
TCTTTTCAGCTTCGGAAGCCTTCTTCTCAGCCTCAGTAGCCTTCTTTTCGGCCTCGGCAAGCTTC
TTCTCCAATTCCTTAGCCTTGGATTCAGCCTCAGCGCCAGTAGAT
Right flanking sequence: Indices 144365 -- 144864
CAACTCCTTGGCCTTGGATTCGGCCTCAACACCAGCCGAAGCCTTCTTCTCGGCCTCGGAAACCT
TCTTTTCGGCCTCGGAAACCTTCTTTTCAGCCTCAGTGGCCTTCTTCTCGGCATCGGAAACCTTC
AGCTCGGCGTCCTTAGCCTTCTTCTCGGCGTCCGCCACCTTCTTCTCCGCCTCGTCGGCCTTCTT
CTCCGCATCCGACGCCTTCTTGTTCGCCTCAAACAACTTCTTCTCAGCATCGGTGGCCTTCTTCT
CCGCCGCAGCCACCTTGTCCTTGGCGTCGTCCACCTGCTTCGCGGTCTCCTCGGCCTTGGCCTTG
GCCGCGGTGGCCTCGTCAAGTTTCTTCTGCACCAGCTCGACCTCGATTTTGACCTCGGCCTCCTT
GGCAGCCACCGCCTTCTTGAGCTCGGTCTCAGCAGCATCCACCTGCTTCTGCAACTCCTCCTGCT
TGGCGCTGGCAGCCTCGAGCTCCTTCTTGGCCTTGTCGGCATCGC
Found at i:144432 original size:21 final size:21
Alignment explanation
Indices: 144406--144548 Score: 106
Period size: 21 Copynumber: 6.8 Consensus size: 21
144396 CCAGCCGAAG
144406 CCTTCTTCTCGGCCTCGGAAA
1 CCTTCTTCTCGGCCTCGGAAA
*
144427 CCTTCTTTTCGGCCTCGGAAA
1 CCTTCTTCTCGGCCTCGGAAA
* * * ***
144448 CCTTCTTTTCAGCCTCAGTGG
1 CCTTCTTCTCGGCCTCGGAAA
*
144469 CCTTCTTCTCGGCATCGGAAA
1 CCTTCTTCTCGGCCTCGGAAA
** * *** *
144490 CCTTCAGCTCGGCGTCCTTAG
1 CCTTCTTCTCGGCCTCGGAAA
* * **
144511 CCTTCTTCTCGGCGTCCGCCA
1 CCTTCTTCTCGGCCTCGGAAA
*
144532 CCTTCTTCTCCGCCTCG
1 CCTTCTTCTCGGCCTCG
144549 TCGGCCTTCT
Statistics
Matches: 93, Mismatches: 29, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
21 93 1.00
ACGTcount: A:0.10, C:0.39, G:0.19, T:0.31
Consensus pattern (21 bp):
CCTTCTTCTCGGCCTCGGAAA
Left flanking sequence: Indices 143906 -- 144405
AGCCTTCTTTTCGGCGTCGGTAGCCTTCTTTTCGGTCTCGGCAAGCTTCTTTTCCAAGTCCTTGA
CCTTAGACTCGGCGTCAGCACCAGCGGAAGCCTTCTTTTCAGCCTCGGTAGCCTTTTTCTCAGCG
TCAGTGACCTTTTTCTCAGCCTCAGTGGCCTTCTTCTCAGCCTCAGTGGCCTTCTTCTCAGCGTC
AGCAAGCTTCTTCTCCAACTCCTTGGCCTTGGATTCAGCCTCGGCACCAGAAGAGGCCTTCTTTT
CAGCTTCGGAAGCCTTCTTCTCAGCCTCAGTAGCCTTCTTTTCGGCCTCGGCAAGCTTCTTCTCC
AATTCCTTAGCCTTGGATTCAGCCTCAGCGCCAGTAGATGCCTTCTTCTCGGCCTCTGCAGCCTT
CTTCTCGGCCTCGGTGGCCTTCTTTTCGGCCTCGGAAACCTTCTTTTCAGCCTCAGTGGCCTTCT
TTTCCAACTCCTTGGCCTTGGATTCGGCCTCAACACCAGCCGAAG
Right flanking sequence: Indices 144549 -- 145048
TCGGCCTTCTTCTCCGCATCCGACGCCTTCTTGTTCGCCTCAAACAACTTCTTCTCAGCATCGGT
GGCCTTCTTCTCCGCCGCAGCCACCTTGTCCTTGGCGTCGTCCACCTGCTTCGCGGTCTCCTCGG
CCTTGGCCTTGGCCGCGGTGGCCTCGTCAAGTTTCTTCTGCACCAGCTCGACCTCGATTTTGACC
TCGGCCTCCTTGGCAGCCACCGCCTTCTTGAGCTCGGTCTCAGCAGCATCCACCTGCTTCTGCAA
CTCCTCCTGCTTGGCGCTGGCAGCCTCGAGCTCCTTCTTGGCCTTGTCGGCATCGCCCTTGCTGG
TCTCCGCTTGGGCCTCGGCCTCCTTCACCTTGTTCTCGAGCTCGCTCACCTTGGCCTCAGCCTCC
TTAACCTTGGCCTCGGCCGCGTCCACCTTGGTCTGCAAAGTCTTTTCCGTCTCCGCCAACTGGTC
CACCTTCTTCTCCAACTCGGCGGCCTTGGTCTCCGCCGCCTGGTG
Found at i:144556 original size:42 final size:42
Alignment explanation
Indices: 144447--144589 Score: 108
Period size: 42 Copynumber: 3.4 Consensus size: 42
144437 GGCCTCGGAA
* * * * *
144447 ACCTTCTTTTCAGCCTCAGT-GGCCTTCTTCTCGGCATCGGAA
1 ACCTTCTTCTCCGCCTC-GTCGGCCTTCTTCTCCGCATCCGAC
** * * * ** * * *
144489 ACCTTCAGCTCGGCGTCCTTAGCCTTCTTCTCGGCGTCCGCC
1 ACCTTCTTCTCCGCCTCGTCGGCCTTCTTCTCCGCATCCGAC
144531 ACCTTCTTCTCCGCCTCGTCGGCCTTCTTCTCCGCATCCGAC
1 ACCTTCTTCTCCGCCTCGTCGGCCTTCTTCTCCGCATCCGAC
* * *
144573 GCCTTCTTGTTCGCCTC
1 ACCTTCTTCTCCGCCTC
144590 AAACAACTTC
Statistics
Matches: 76, Mismatches: 24, Indels: 2
0.75 0.24 0.02
Matches are distributed among these distances:
41 1 0.01
42 75 0.99
ACGTcount: A:0.08, C:0.41, G:0.18, T:0.32
Consensus pattern (42 bp):
ACCTTCTTCTCCGCCTCGTCGGCCTTCTTCTCCGCATCCGAC
Left flanking sequence: Indices 143947 -- 144446
CAAGCTTCTTTTCCAAGTCCTTGACCTTAGACTCGGCGTCAGCACCAGCGGAAGCCTTCTTTTCA
GCCTCGGTAGCCTTTTTCTCAGCGTCAGTGACCTTTTTCTCAGCCTCAGTGGCCTTCTTCTCAGC
CTCAGTGGCCTTCTTCTCAGCGTCAGCAAGCTTCTTCTCCAACTCCTTGGCCTTGGATTCAGCCT
CGGCACCAGAAGAGGCCTTCTTTTCAGCTTCGGAAGCCTTCTTCTCAGCCTCAGTAGCCTTCTTT
TCGGCCTCGGCAAGCTTCTTCTCCAATTCCTTAGCCTTGGATTCAGCCTCAGCGCCAGTAGATGC
CTTCTTCTCGGCCTCTGCAGCCTTCTTCTCGGCCTCGGTGGCCTTCTTTTCGGCCTCGGAAACCT
TCTTTTCAGCCTCAGTGGCCTTCTTTTCCAACTCCTTGGCCTTGGATTCGGCCTCAACACCAGCC
GAAGCCTTCTTCTCGGCCTCGGAAACCTTCTTTTCGGCCTCGGAA
Right flanking sequence: Indices 144590 -- 145089
AAACAACTTCTTCTCAGCATCGGTGGCCTTCTTCTCCGCCGCAGCCACCTTGTCCTTGGCGTCGT
CCACCTGCTTCGCGGTCTCCTCGGCCTTGGCCTTGGCCGCGGTGGCCTCGTCAAGTTTCTTCTGC
ACCAGCTCGACCTCGATTTTGACCTCGGCCTCCTTGGCAGCCACCGCCTTCTTGAGCTCGGTCTC
AGCAGCATCCACCTGCTTCTGCAACTCCTCCTGCTTGGCGCTGGCAGCCTCGAGCTCCTTCTTGG
CCTTGTCGGCATCGCCCTTGCTGGTCTCCGCTTGGGCCTCGGCCTCCTTCACCTTGTTCTCGAGC
TCGCTCACCTTGGCCTCAGCCTCCTTAACCTTGGCCTCGGCCGCGTCCACCTTGGTCTGCAAAGT
CTTTTCCGTCTCCGCCAACTGGTCCACCTTCTTCTCCAACTCGGCGGCCTTGGTCTCCGCCGCCT
GGTGCTTGCTCTCGAGGTCGCTGTGCTTGCTTTCAAGCTCCTTGT
Found at i:144576 original size:21 final size:21
Alignment explanation
Indices: 144510--144580 Score: 72
Period size: 21 Copynumber: 3.4 Consensus size: 21
144500 GGCGTCCTTA
* * *
144510 GCCTTCTTCTCGGCGTCCGCC
1 GCCTTCTTCTCCGCATCCGAC
* * *
144531 ACCTTCTTCTCCGCCT-CGTC
1 GCCTTCTTCTCCGCATCCGAC
144551 GGCCTTCTTCTCCGCATCCGAC
1 -GCCTTCTTCTCCGCATCCGAC
144573 GCCTTCTT
1 GCCTTCTT
144581 GTTCGCCTCA
Statistics
Matches: 41, Mismatches: 7, Indels: 4
0.79 0.13 0.08
Matches are distributed among these distances:
20 3 0.07
21 35 0.85
22 3 0.07
ACGTcount: A:0.04, C:0.46, G:0.17, T:0.32
Consensus pattern (21 bp):
GCCTTCTTCTCCGCATCCGAC
Left flanking sequence: Indices 144010 -- 144509
CAGCCTCGGTAGCCTTTTTCTCAGCGTCAGTGACCTTTTTCTCAGCCTCAGTGGCCTTCTTCTCA
GCCTCAGTGGCCTTCTTCTCAGCGTCAGCAAGCTTCTTCTCCAACTCCTTGGCCTTGGATTCAGC
CTCGGCACCAGAAGAGGCCTTCTTTTCAGCTTCGGAAGCCTTCTTCTCAGCCTCAGTAGCCTTCT
TTTCGGCCTCGGCAAGCTTCTTCTCCAATTCCTTAGCCTTGGATTCAGCCTCAGCGCCAGTAGAT
GCCTTCTTCTCGGCCTCTGCAGCCTTCTTCTCGGCCTCGGTGGCCTTCTTTTCGGCCTCGGAAAC
CTTCTTTTCAGCCTCAGTGGCCTTCTTTTCCAACTCCTTGGCCTTGGATTCGGCCTCAACACCAG
CCGAAGCCTTCTTCTCGGCCTCGGAAACCTTCTTTTCGGCCTCGGAAACCTTCTTTTCAGCCTCA
GTGGCCTTCTTCTCGGCATCGGAAACCTTCAGCTCGGCGTCCTTA
Right flanking sequence: Indices 144581 -- 145080
GTTCGCCTCAAACAACTTCTTCTCAGCATCGGTGGCCTTCTTCTCCGCCGCAGCCACCTTGTCCT
TGGCGTCGTCCACCTGCTTCGCGGTCTCCTCGGCCTTGGCCTTGGCCGCGGTGGCCTCGTCAAGT
TTCTTCTGCACCAGCTCGACCTCGATTTTGACCTCGGCCTCCTTGGCAGCCACCGCCTTCTTGAG
CTCGGTCTCAGCAGCATCCACCTGCTTCTGCAACTCCTCCTGCTTGGCGCTGGCAGCCTCGAGCT
CCTTCTTGGCCTTGTCGGCATCGCCCTTGCTGGTCTCCGCTTGGGCCTCGGCCTCCTTCACCTTG
TTCTCGAGCTCGCTCACCTTGGCCTCAGCCTCCTTAACCTTGGCCTCGGCCGCGTCCACCTTGGT
CTGCAAAGTCTTTTCCGTCTCCGCCAACTGGTCCACCTTCTTCTCCAACTCGGCGGCCTTGGTCT
CCGCCGCCTGGTGCTTGCTCTCGAGGTCGCTGTGCTTGCTTTCAA
Found at i:144911 original size:21 final size:21
Alignment explanation
Indices: 144884--144956 Score: 78
Period size: 21 Copynumber: 3.5 Consensus size: 21
144874 TCTCCGCTTG
144884 GGCCTCGGCCTCCTTCACCTT
1 GGCCTCGGCCTCCTTCACCTT
**
144905 GTTCTCGAG-CTCGC-TCACCTT
1 GGCCTCG-GCCTC-CTTCACCTT
* *
144926 GGCCTCAGCCTCCTTAACCTT
1 GGCCTCGGCCTCCTTCACCTT
144947 GGCCTCGGCC
1 GGCCTCGGCC
144957 GCGTCCACCT
Statistics
Matches: 41, Mismatches: 7, Indels: 8
0.73 0.12 0.14
Matches are distributed among these distances:
20 2 0.05
21 37 0.90
22 2 0.05
ACGTcount: A:0.08, C:0.44, G:0.21, T:0.27
Consensus pattern (21 bp):
GGCCTCGGCCTCCTTCACCTT
Left flanking sequence: Indices 144384 -- 144883
TCGGCCTCAACACCAGCCGAAGCCTTCTTCTCGGCCTCGGAAACCTTCTTTTCGGCCTCGGAAAC
CTTCTTTTCAGCCTCAGTGGCCTTCTTCTCGGCATCGGAAACCTTCAGCTCGGCGTCCTTAGCCT
TCTTCTCGGCGTCCGCCACCTTCTTCTCCGCCTCGTCGGCCTTCTTCTCCGCATCCGACGCCTTC
TTGTTCGCCTCAAACAACTTCTTCTCAGCATCGGTGGCCTTCTTCTCCGCCGCAGCCACCTTGTC
CTTGGCGTCGTCCACCTGCTTCGCGGTCTCCTCGGCCTTGGCCTTGGCCGCGGTGGCCTCGTCAA
GTTTCTTCTGCACCAGCTCGACCTCGATTTTGACCTCGGCCTCCTTGGCAGCCACCGCCTTCTTG
AGCTCGGTCTCAGCAGCATCCACCTGCTTCTGCAACTCCTCCTGCTTGGCGCTGGCAGCCTCGAG
CTCCTTCTTGGCCTTGTCGGCATCGCCCTTGCTGGTCTCCGCTTG
Right flanking sequence: Indices 144957 -- 145456
GCGTCCACCTTGGTCTGCAAAGTCTTTTCCGTCTCCGCCAACTGGTCCACCTTCTTCTCCAACTC
GGCGGCCTTGGTCTCCGCCGCCTGGTGCTTGCTCTCGAGGTCGCTGTGCTTGCTTTCAAGCTCCT
TGTGGGCAGCAGCAGCCTTATCCGCGTCCTCCTTGGCCTGCTTCAACTCCGCGGCCACCAGCTCG
TGCTTCTCGTGCGCGGCCTTGGCGTCGGACCGTGCGGTCTCGAGCTCGTCCTGGGTGGTCTTGTG
GTCGGTCTCAAGCTTCTTGTGTGTGCTCTCAAGCGTCGAGTGCGCCTGGTTACGCTCCTCGAGCT
CCTTGGTGGTCAGAGAGTGCTTCTCCGAGAGCTCGCCGTGCTCCTTGTCGAGGGCAGCGTGCTTG
TCGGAGAGCTCGCCGTGCTGCTTGGAAAGGTCAGCGTGCTTGGCCTGCTCCGCCTTGAGCATGGT
CTCTGCGTCCGTGAGCTTGGTCTTGAGCTCGGCCAACTCGGCCTC
Found at i:144966 original size:42 final size:42
Alignment explanation
Indices: 144884--144969 Score: 104
Period size: 42 Copynumber: 2.0 Consensus size: 42
144874 TCTCCGCTTG
* * **
144884 GGCCTCGGCCTCCTTCACCTTGTTCTCGAGCTCGCTCACCTT
1 GGCCTCAGCCTCCTTAACCTTGGCCTCGAGCTCGCTCACCTT
144926 GGCCTCAGCCTCCTTAACCTTGGCCTCG-GC-CGCGTCCACCTT
1 GGCCTCAGCCTCCTTAACCTTGGCCTCGAGCTCGC-T-CACCTT
144968 GG
1 GG
144970 TCTGCAAAGT
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
40 3 0.08
41 3 0.08
42 32 0.84
ACGTcount: A:0.08, C:0.43, G:0.22, T:0.27
Consensus pattern (42 bp):
GGCCTCAGCCTCCTTAACCTTGGCCTCGAGCTCGCTCACCTT
Left flanking sequence: Indices 144384 -- 144883
TCGGCCTCAACACCAGCCGAAGCCTTCTTCTCGGCCTCGGAAACCTTCTTTTCGGCCTCGGAAAC
CTTCTTTTCAGCCTCAGTGGCCTTCTTCTCGGCATCGGAAACCTTCAGCTCGGCGTCCTTAGCCT
TCTTCTCGGCGTCCGCCACCTTCTTCTCCGCCTCGTCGGCCTTCTTCTCCGCATCCGACGCCTTC
TTGTTCGCCTCAAACAACTTCTTCTCAGCATCGGTGGCCTTCTTCTCCGCCGCAGCCACCTTGTC
CTTGGCGTCGTCCACCTGCTTCGCGGTCTCCTCGGCCTTGGCCTTGGCCGCGGTGGCCTCGTCAA
GTTTCTTCTGCACCAGCTCGACCTCGATTTTGACCTCGGCCTCCTTGGCAGCCACCGCCTTCTTG
AGCTCGGTCTCAGCAGCATCCACCTGCTTCTGCAACTCCTCCTGCTTGGCGCTGGCAGCCTCGAG
CTCCTTCTTGGCCTTGTCGGCATCGCCCTTGCTGGTCTCCGCTTG
Right flanking sequence: Indices 144970 -- 145469
TCTGCAAAGTCTTTTCCGTCTCCGCCAACTGGTCCACCTTCTTCTCCAACTCGGCGGCCTTGGTC
TCCGCCGCCTGGTGCTTGCTCTCGAGGTCGCTGTGCTTGCTTTCAAGCTCCTTGTGGGCAGCAGC
AGCCTTATCCGCGTCCTCCTTGGCCTGCTTCAACTCCGCGGCCACCAGCTCGTGCTTCTCGTGCG
CGGCCTTGGCGTCGGACCGTGCGGTCTCGAGCTCGTCCTGGGTGGTCTTGTGGTCGGTCTCAAGC
TTCTTGTGTGTGCTCTCAAGCGTCGAGTGCGCCTGGTTACGCTCCTCGAGCTCCTTGGTGGTCAG
AGAGTGCTTCTCCGAGAGCTCGCCGTGCTCCTTGTCGAGGGCAGCGTGCTTGTCGGAGAGCTCGC
CGTGCTGCTTGGAAAGGTCAGCGTGCTTGGCCTGCTCCGCCTTGAGCATGGTCTCTGCGTCCGTG
AGCTTGGTCTTGAGCTCGGCCAACTCGGCCTCCACCTGCTTGCGG
Found at i:145382 original size:42 final size:42
Alignment explanation
Indices: 145298--145388 Score: 119
Period size: 42 Copynumber: 2.2 Consensus size: 42
145288 TGGTCAGAGA
* ***
145298 GTGCTTCTCCGAGAGCTCGCCGTGCTCCTTGTCGAGGGCAGC
1 GTGCTTGTCCGAGAGCTCGCCGTGCTCCTTGGAAAGGGCAGC
* * *
145340 GTGCTTGTCGGAGAGCTCGCCGTGCTGCTTGGAAAGGTCAGC
1 GTGCTTGTCCGAGAGCTCGCCGTGCTCCTTGGAAAGGGCAGC
145382 GTGCTTG
1 GTGCTTG
145389 GCCTGCTCCG
Statistics
Matches: 42, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.11, C:0.27, G:0.36, T:0.25
Consensus pattern (42 bp):
GTGCTTGTCCGAGAGCTCGCCGTGCTCCTTGGAAAGGGCAGC
Left flanking sequence: Indices 144798 -- 145297
TGCTTCTGCAACTCCTCCTGCTTGGCGCTGGCAGCCTCGAGCTCCTTCTTGGCCTTGTCGGCATC
GCCCTTGCTGGTCTCCGCTTGGGCCTCGGCCTCCTTCACCTTGTTCTCGAGCTCGCTCACCTTGG
CCTCAGCCTCCTTAACCTTGGCCTCGGCCGCGTCCACCTTGGTCTGCAAAGTCTTTTCCGTCTCC
GCCAACTGGTCCACCTTCTTCTCCAACTCGGCGGCCTTGGTCTCCGCCGCCTGGTGCTTGCTCTC
GAGGTCGCTGTGCTTGCTTTCAAGCTCCTTGTGGGCAGCAGCAGCCTTATCCGCGTCCTCCTTGG
CCTGCTTCAACTCCGCGGCCACCAGCTCGTGCTTCTCGTGCGCGGCCTTGGCGTCGGACCGTGCG
GTCTCGAGCTCGTCCTGGGTGGTCTTGTGGTCGGTCTCAAGCTTCTTGTGTGTGCTCTCAAGCGT
CGAGTGCGCCTGGTTACGCTCCTCGAGCTCCTTGGTGGTCAGAGA
Right flanking sequence: Indices 145389 -- 145888
GCCTGCTCCGCCTTGAGCATGGTCTCTGCGTCCGTGAGCTTGGTCTTGAGCTCGGCCAACTCGGC
CTCCACCTGCTTGCGGCCCTCCTCCTCGTCCTGGGCCTGCTTCTCCGCCTTGGAAACCGCCTCCT
GCAACCGGGCCACCTCAGCACTGAGGTCCGCCACCTTGCTGGCCTCCGCCTTGGCCGCCCGCTCG
CGGTCTGCCACCTGCAAGTCCTTTTCGGCGTAGATCTTGTCGAGGGCCGCCTGGTGGTCGTTCTT
CAACTGGGTGGCCTGGGAGTCGAGCTTGCCCTCGGCGGCCGCCACCTGCTGCTTTAGCTCGCCCA
CCTCCTTGGTGTAGCGAGCCACTTCCGCCTCCAACTTGGTCTTGCGCTCCTTGACCTTGGCCCCC
TCGGCGGAGGCGGAGGCGTGGTCGGCCTCGAGCGTCGACACCTGCTGCTTGAGCTTGGTGACCTG
GGCCAGCCACTCCAAGTCCAGCTTCTTCTTGTTGTCGTCCAGCTG
Found at i:149862 original size:17 final size:17
Alignment explanation
Indices: 149805--149862 Score: 52
Period size: 17 Copynumber: 3.6 Consensus size: 17
149795 GTTTCCACAT
*
149805 AATGCCTGCTTCT--AG
1 AATGCCTGCTTTTACAG
* *
149820 AATGCCTG-TTTCCACGG
1 AATGCCTGCTTT-TACAG
149837 AAT-CCTGCTTTTACAG
1 AATGCCTGCTTTTACAG
149853 AATGCCTGCT
1 AATGCCTGCT
149863 CCAGAATGCC
Statistics
Matches: 33, Mismatches: 5, Indels: 8
0.72 0.11 0.17
Matches are distributed among these distances:
14 2 0.06
15 8 0.24
16 10 0.30
17 13 0.39
ACGTcount: A:0.21, C:0.28, G:0.19, T:0.33
Consensus pattern (17 bp):
AATGCCTGCTTTTACAG
Left flanking sequence: Indices 149305 -- 149804
CGACGACGGGCCCATGTTCACCTTCGATGATTTGTAGCGTTGCGGGCAACTTACATAGTCAATAC
AGGTGATGACTACAGCGGCGCTTTTGTAGTTTTGCTCAACCGCCATAGGGGCCGTGAGGTTCTCC
CGCTTGAACTTTCCCTTCCCGTTTGGGTGTTAAGCCGCCCGCGTATATGCGCTAATGGCGCAGGA
GTAGCGTTGGAGAATCGCGTAGATCGATGAAGTTCCACGGCTATGCCGGTAGACGATGCGGACAG
TAGGCTACGGGGCAGGTGGACCCACCCGCATAATGCGAGGTGCGGTATGTAGTTACGGGGTATAT
TGTAAAGGGTTTGCATGCAATTGAGCACTATTCGGGCCGTGATCGAGGCATTGGGCCTCAATTGT
GCTGCTTTTTGATTAATTCCTAGGCATTAACCCTGAAATCTTTCTTGTGTATTGAGCAATACTAT
TTCTTAGATCTACGGAATGCTTTCCCAGAATACCTGTTTCCACAT
Right flanking sequence: Indices 149863 -- 150362
CCAGAATGCCTGCTTCTTTAATCTCTACGACAGTTCCTTTCGCAGCCTCGATTACCATGACGTAG
TTCCCTACTTACTATTACAGCGACAATTACACAGGGGCACGGGACACACGTAGTGTTTGCGGAAC
CACTCTTCAGCGTGGTGAGCATGGCATCCGTGGTTACAGCTCAAACAGAACGAAAACCACTCGCG
GAACTTGCCCGTACCCGCATCCCCCTCGGGAAGCGGGGTCCCTAGCGTAAGCAAACACACCAGAC
ACCGCGGGAACGGGGCCCCACAGTGCACACAGCACACAATGTCCGACTGCGCCAGCTTGTTCATC
TGGAGCTTGTTGAACTGCTTGAGCAACAGCGGACCACCCGAACTGCCCGACCCGTTGGCTGAGCC
CGCAGCCAACTGGCCCACCGGTTTGGCAAAGTTGCGGTTGCACCGCAAACACTGCAAGTGCACCT
GCTTTGGGTTGGCTCGAAGCGTCGGGTGCCCGTTGAAATTACGCG
Found at i:149869 original size:14 final size:14
Alignment explanation
Indices: 149850--149876 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
149840 CCTGCTTTTA
149850 CAGAATGCCTGCTC
1 CAGAATGCCTGCTC
149864 CAGAATGCCTGCT
1 CAGAATGCCTGCT
149877 TCTTTAATCT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.22, C:0.33, G:0.22, T:0.22
Consensus pattern (14 bp):
CAGAATGCCTGCTC
Left flanking sequence: Indices 149350 -- 149849
GCAACTTACATAGTCAATACAGGTGATGACTACAGCGGCGCTTTTGTAGTTTTGCTCAACCGCCA
TAGGGGCCGTGAGGTTCTCCCGCTTGAACTTTCCCTTCCCGTTTGGGTGTTAAGCCGCCCGCGTA
TATGCGCTAATGGCGCAGGAGTAGCGTTGGAGAATCGCGTAGATCGATGAAGTTCCACGGCTATG
CCGGTAGACGATGCGGACAGTAGGCTACGGGGCAGGTGGACCCACCCGCATAATGCGAGGTGCGG
TATGTAGTTACGGGGTATATTGTAAAGGGTTTGCATGCAATTGAGCACTATTCGGGCCGTGATCG
AGGCATTGGGCCTCAATTGTGCTGCTTTTTGATTAATTCCTAGGCATTAACCCTGAAATCTTTCT
TGTGTATTGAGCAATACTATTTCTTAGATCTACGGAATGCTTTCCCAGAATACCTGTTTCCACAT
AATGCCTGCTTCTAGAATGCCTGTTTCCACGGAATCCTGCTTTTA
Right flanking sequence: Indices 149877 -- 150376
TCTTTAATCTCTACGACAGTTCCTTTCGCAGCCTCGATTACCATGACGTAGTTCCCTACTTACTA
TTACAGCGACAATTACACAGGGGCACGGGACACACGTAGTGTTTGCGGAACCACTCTTCAGCGTG
GTGAGCATGGCATCCGTGGTTACAGCTCAAACAGAACGAAAACCACTCGCGGAACTTGCCCGTAC
CCGCATCCCCCTCGGGAAGCGGGGTCCCTAGCGTAAGCAAACACACCAGACACCGCGGGAACGGG
GCCCCACAGTGCACACAGCACACAATGTCCGACTGCGCCAGCTTGTTCATCTGGAGCTTGTTGAA
CTGCTTGAGCAACAGCGGACCACCCGAACTGCCCGACCCGTTGGCTGAGCCCGCAGCCAACTGGC
CCACCGGTTTGGCAAAGTTGCGGTTGCACCGCAAACACTGCAAGTGCACCTGCTTTGGGTTGGCT
CGAAGCGTCGGGTGCCCGTTGAAATTACGCGACAACCGGGTTCGA
Found at i:149875 original size:31 final size:31
Alignment explanation
Indices: 149786--149879 Score: 86
Period size: 32 Copynumber: 3.0 Consensus size: 31
149776 ATGCTTTCCC
* * *
149786 AGAATACCTGTTTCCACATAATGCCTGCTTCT
1 AGAATGCCTGTCTCCAC-GAATGCCTGCTTCT
* *
149818 AGAATGCCTGTTTCCACGGAAT-CCTGCTTTT
1 AGAATGCCTGTCTCCAC-GAATGCCTGCTTCT
149849 ACAGAATGCCTG-CTCCA-GAATGCCTGCTTCT
1 --AGAATGCCTGTCTCCACGAATGCCTGCTTCT
149880 TTAATCTCTA
Statistics
Matches: 53, Mismatches: 6, Indels: 7
0.80 0.09 0.11
Matches are distributed among these distances:
30 4 0.08
31 16 0.30
32 23 0.43
33 10 0.19
ACGTcount: A:0.22, C:0.29, G:0.17, T:0.32
Consensus pattern (31 bp):
AGAATGCCTGTCTCCACGAATGCCTGCTTCT
Left flanking sequence: Indices 149286 -- 149785
TGTTCATCTGCAAGCCCTGCGACGACGGGCCCATGTTCACCTTCGATGATTTGTAGCGTTGCGGG
CAACTTACATAGTCAATACAGGTGATGACTACAGCGGCGCTTTTGTAGTTTTGCTCAACCGCCAT
AGGGGCCGTGAGGTTCTCCCGCTTGAACTTTCCCTTCCCGTTTGGGTGTTAAGCCGCCCGCGTAT
ATGCGCTAATGGCGCAGGAGTAGCGTTGGAGAATCGCGTAGATCGATGAAGTTCCACGGCTATGC
CGGTAGACGATGCGGACAGTAGGCTACGGGGCAGGTGGACCCACCCGCATAATGCGAGGTGCGGT
ATGTAGTTACGGGGTATATTGTAAAGGGTTTGCATGCAATTGAGCACTATTCGGGCCGTGATCGA
GGCATTGGGCCTCAATTGTGCTGCTTTTTGATTAATTCCTAGGCATTAACCCTGAAATCTTTCTT
GTGTATTGAGCAATACTATTTCTTAGATCTACGGAATGCTTTCCC
Right flanking sequence: Indices 149880 -- 150379
TTAATCTCTACGACAGTTCCTTTCGCAGCCTCGATTACCATGACGTAGTTCCCTACTTACTATTA
CAGCGACAATTACACAGGGGCACGGGACACACGTAGTGTTTGCGGAACCACTCTTCAGCGTGGTG
AGCATGGCATCCGTGGTTACAGCTCAAACAGAACGAAAACCACTCGCGGAACTTGCCCGTACCCG
CATCCCCCTCGGGAAGCGGGGTCCCTAGCGTAAGCAAACACACCAGACACCGCGGGAACGGGGCC
CCACAGTGCACACAGCACACAATGTCCGACTGCGCCAGCTTGTTCATCTGGAGCTTGTTGAACTG
CTTGAGCAACAGCGGACCACCCGAACTGCCCGACCCGTTGGCTGAGCCCGCAGCCAACTGGCCCA
CCGGTTTGGCAAAGTTGCGGTTGCACCGCAAACACTGCAAGTGCACCTGCTTTGGGTTGGCTCGA
AGCGTCGGGTGCCCGTTGAAATTACGCGACAACCGGGTTCGAGCC
Found at i:166838 original size:15 final size:15
Alignment explanation
Indices: 166818--166978 Score: 178
Period size: 15 Copynumber: 10.7 Consensus size: 15
166808 CGCTTCGTCG
166818 GCTGCCGAGTCCTCC
1 GCTGCCGAGTCCTCC
*
166833 GCTGCCGAGTCCTCT
1 GCTGCCGAGTCCTCC
*
166848 GCTGCTGAGTCCTCC
1 GCTGCCGAGTCCTCC
* * *
166863 GCTGCTGAGTCTTCT
1 GCTGCCGAGTCCTCC
166878 GCTGCCGAGTCCTCC
1 GCTGCCGAGTCCTCC
* * *
166893 GCTGCTGAGTCTTCT
1 GCTGCCGAGTCCTCC
166908 GCTGCCGAGTCCTCC
1 GCTGCCGAGTCCTCC
* * *
166923 GCTGCTGAGTCGTCT
1 GCTGCCGAGTCCTCC
* * *
166938 GCCGCCGAGTCGTCT
1 GCTGCCGAGTCCTCC
* *
166953 GCTGCCGAGACCACC
1 GCTGCCGAGTCCTCC
166968 GCTGCCGAGTC
1 GCTGCCGAGTC
166979 TTCTCCCGCT
Statistics
Matches: 121, Mismatches: 25, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 121 1.00
ACGTcount: A:0.08, C:0.39, G:0.29, T:0.25
Consensus pattern (15 bp):
GCTGCCGAGTCCTCC
Left flanking sequence: Indices 166318 -- 166817
CGGAACCACAAAGTGGCGGAATCCCCACCGCTGACACCGATACCAAGACCGGCGCCAATGCCTGC
TGCCGCGGCTTTTCCCCCGCCCGCCCCGCTCAGCAACCGTAAGGAGTCGTGTCCACCTGGGCACG
CCTCCTATTCTTGGCCGCCTACCAGAAACACGCTCCGCATACATTTGCAAATTATTTTTTTATGC
ACAGCGCGTCGAGGTGAGGTGGACAACGACACTATATAACAAAAAAAAAGCCACTATGACGAGGT
TTTTTAAACTACTTACACTCATTTGTATTGCGAATCTTCGCGTCCACTCGTTCCATGCGTCTCAA
CTCCGTGATATTGTTGGCGGCCGCCGTCCAGGCCGTCCCGTTTATGAAGCGGGCTGACCCCTCTT
CTCCCGAGGACCTTGCGTCTCTCGTTGGTCAGCAGACCGGTACTCCCGTGCCCGGTGAGGATGTT
GGTGACCTTGTCGCCTCGCCTGCTGCTTCTTCGCCCGCTTCGTCG
Right flanking sequence: Indices 166979 -- 167478
TTCTCCCGCTGAGACCGGCTCCGTCGCCGCTGAGTCCGGTGACGTCACCTCGTCTTCGGACAACA
CCGTCACCTCGTCGCTTCCCGACGTGCTCGTGACCGAGTCTGAGTCTGGCTCCGCTGCCCCCACT
TCCGCTGAGGTGATCTCCTCCGCCGAGTCTCAGGAGCAGTCCGCCATCGCTCTGGCCTCCGACAA
CGTCGTCACCGTGCAGACCACCATCTGCACCACCGTGACCGAGTACGAGGACTGCACCATCGACG
GTACCCCTACTCTGACCCCCAACGTCATCACTCTCACCAAGACTGTTGACTGCACCCCCGTGGAG
GAGGTGTCCACCGTGACCAAGTACATCGAGTACGTGACCAACGGTGTCACCGAGTCCAAGCCCGA
GGTTGAGACCGTCACCGTGATCGTCCAGAAGGTCCCCGAGGTCGAGGAGGGCGAGTGGGACAACG
TCCCCGTCACCGTGACCAAGACCCTTGTCCTGTACCTCACCCACT
Found at i:166852 original size:30 final size:30
Alignment explanation
Indices: 166818--166978 Score: 214
Period size: 30 Copynumber: 5.4 Consensus size: 30
166808 CGCTTCGTCG
*
166818 GCTGCCGAGTCCTCCGCTGCCGAGTCCTCT
1 GCTGCCGAGTCCTCCGCTGCTGAGTCCTCT
* *
166848 GCTGCTGAGTCCTCCGCTGCTGAGTCTTCT
1 GCTGCCGAGTCCTCCGCTGCTGAGTCCTCT
*
166878 GCTGCCGAGTCCTCCGCTGCTGAGTCTTCT
1 GCTGCCGAGTCCTCCGCTGCTGAGTCCTCT
*
166908 GCTGCCGAGTCCTCCGCTGCTGAGTCGTCT
1 GCTGCCGAGTCCTCCGCTGCTGAGTCCTCT
* * * * * * *
166938 GCCGCCGAGTCGTCTGCTGCCGAGACCACC
1 GCTGCCGAGTCCTCCGCTGCTGAGTCCTCT
166968 GCTGCCGAGTC
1 GCTGCCGAGTC
166979 TTCTCCCGCT
Statistics
Matches: 117, Mismatches: 14, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 117 1.00
ACGTcount: A:0.08, C:0.39, G:0.29, T:0.25
Consensus pattern (30 bp):
GCTGCCGAGTCCTCCGCTGCTGAGTCCTCT
Left flanking sequence: Indices 166318 -- 166817
CGGAACCACAAAGTGGCGGAATCCCCACCGCTGACACCGATACCAAGACCGGCGCCAATGCCTGC
TGCCGCGGCTTTTCCCCCGCCCGCCCCGCTCAGCAACCGTAAGGAGTCGTGTCCACCTGGGCACG
CCTCCTATTCTTGGCCGCCTACCAGAAACACGCTCCGCATACATTTGCAAATTATTTTTTTATGC
ACAGCGCGTCGAGGTGAGGTGGACAACGACACTATATAACAAAAAAAAAGCCACTATGACGAGGT
TTTTTAAACTACTTACACTCATTTGTATTGCGAATCTTCGCGTCCACTCGTTCCATGCGTCTCAA
CTCCGTGATATTGTTGGCGGCCGCCGTCCAGGCCGTCCCGTTTATGAAGCGGGCTGACCCCTCTT
CTCCCGAGGACCTTGCGTCTCTCGTTGGTCAGCAGACCGGTACTCCCGTGCCCGGTGAGGATGTT
GGTGACCTTGTCGCCTCGCCTGCTGCTTCTTCGCCCGCTTCGTCG
Right flanking sequence: Indices 166979 -- 167478
TTCTCCCGCTGAGACCGGCTCCGTCGCCGCTGAGTCCGGTGACGTCACCTCGTCTTCGGACAACA
CCGTCACCTCGTCGCTTCCCGACGTGCTCGTGACCGAGTCTGAGTCTGGCTCCGCTGCCCCCACT
TCCGCTGAGGTGATCTCCTCCGCCGAGTCTCAGGAGCAGTCCGCCATCGCTCTGGCCTCCGACAA
CGTCGTCACCGTGCAGACCACCATCTGCACCACCGTGACCGAGTACGAGGACTGCACCATCGACG
GTACCCCTACTCTGACCCCCAACGTCATCACTCTCACCAAGACTGTTGACTGCACCCCCGTGGAG
GAGGTGTCCACCGTGACCAAGTACATCGAGTACGTGACCAACGGTGTCACCGAGTCCAAGCCCGA
GGTTGAGACCGTCACCGTGATCGTCCAGAAGGTCCCCGAGGTCGAGGAGGGCGAGTGGGACAACG
TCCCCGTCACCGTGACCAAGACCCTTGTCCTGTACCTCACCCACT
Found at i:166958 original size:45 final size:45
Alignment explanation
Indices: 166812--166991 Score: 207
Period size: 45 Copynumber: 4.0 Consensus size: 45
166802 TTCGCCCGCT
* *
166812 TCGTCGGCTGCCGAGTCCTCCGCTGCCGAGTCCTCTGCTGCTGAG
1 TCGTCTGCTGCCGAGTCCTCCGCTGCCGAGTCCTCTGCCGCTGAG
* * * * * * *
166857 TCCTCCGCTGCTGAGTCTTCTGCTGCCGAGTCCTCCGCTGCTGAG
1 TCGTCTGCTGCCGAGTCCTCCGCTGCCGAGTCCTCTGCCGCTGAG
* * * *
166902 TCTTCTGCTGCCGAGTCCTCCGCTGCTGAGTCGTCTGCCGCCGAG
1 TCGTCTGCTGCCGAGTCCTCCGCTGCCGAGTCCTCTGCCGCTGAG
* * * *
166947 TCGTCTGCTGCCGAGACCACCGCTGCCGAGTCTTCTCCCGCTGAG
1 TCGTCTGCTGCCGAGTCCTCCGCTGCCGAGTCCTCTGCCGCTGAG
166992 ACCGGCTCCG
Statistics
Matches: 112, Mismatches: 23, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
45 112 1.00
ACGTcount: A:0.08, C:0.38, G:0.28, T:0.26
Consensus pattern (45 bp):
TCGTCTGCTGCCGAGTCCTCCGCTGCCGAGTCCTCTGCCGCTGAG
Left flanking sequence: Indices 166312 -- 166811
CCACCACGGAACCACAAAGTGGCGGAATCCCCACCGCTGACACCGATACCAAGACCGGCGCCAAT
GCCTGCTGCCGCGGCTTTTCCCCCGCCCGCCCCGCTCAGCAACCGTAAGGAGTCGTGTCCACCTG
GGCACGCCTCCTATTCTTGGCCGCCTACCAGAAACACGCTCCGCATACATTTGCAAATTATTTTT
TTATGCACAGCGCGTCGAGGTGAGGTGGACAACGACACTATATAACAAAAAAAAAGCCACTATGA
CGAGGTTTTTTAAACTACTTACACTCATTTGTATTGCGAATCTTCGCGTCCACTCGTTCCATGCG
TCTCAACTCCGTGATATTGTTGGCGGCCGCCGTCCAGGCCGTCCCGTTTATGAAGCGGGCTGACC
CCTCTTCTCCCGAGGACCTTGCGTCTCTCGTTGGTCAGCAGACCGGTACTCCCGTGCCCGGTGAG
GATGTTGGTGACCTTGTCGCCTCGCCTGCTGCTTCTTCGCCCGCT
Right flanking sequence: Indices 166992 -- 167491
ACCGGCTCCGTCGCCGCTGAGTCCGGTGACGTCACCTCGTCTTCGGACAACACCGTCACCTCGTC
GCTTCCCGACGTGCTCGTGACCGAGTCTGAGTCTGGCTCCGCTGCCCCCACTTCCGCTGAGGTGA
TCTCCTCCGCCGAGTCTCAGGAGCAGTCCGCCATCGCTCTGGCCTCCGACAACGTCGTCACCGTG
CAGACCACCATCTGCACCACCGTGACCGAGTACGAGGACTGCACCATCGACGGTACCCCTACTCT
GACCCCCAACGTCATCACTCTCACCAAGACTGTTGACTGCACCCCCGTGGAGGAGGTGTCCACCG
TGACCAAGTACATCGAGTACGTGACCAACGGTGTCACCGAGTCCAAGCCCGAGGTTGAGACCGTC
ACCGTGATCGTCCAGAAGGTCCCCGAGGTCGAGGAGGGCGAGTGGGACAACGTCCCCGTCACCGT
GACCAAGACCCTTGTCCTGTACCTCACCCACTCCAACGACCAGGG
Found at i:167799 original size:18 final size:18
Alignment explanation
Indices: 167776--167814 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
167766 CACTGCAACC
*
167776 CCGAGACTGTTACCGAGA
1 CCGAGACCGTTACCGAGA
*
167794 CCGAGACCGTTACCGTGA
1 CCGAGACCGTTACCGAGA
167812 CCG
1 CCG
167815 CTGCCGCCGA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.23, C:0.33, G:0.28, T:0.15
Consensus pattern (18 bp):
CCGAGACCGTTACCGAGA
Left flanking sequence: Indices 167276 -- 167775
CAAGACTGTTGACTGCACCCCCGTGGAGGAGGTGTCCACCGTGACCAAGTACATCGAGTACGTGA
CCAACGGTGTCACCGAGTCCAAGCCCGAGGTTGAGACCGTCACCGTGATCGTCCAGAAGGTCCCC
GAGGTCGAGGAGGGCGAGTGGGACAACGTCCCCGTCACCGTGACCAAGACCCTTGTCCTGTACCT
CACCCACTCCAACGACCAGGGCCAGCTCACCACTGAGCCCGTTGAGACTATTACTCTTACTGTTG
CCCACACCCTTGATGCCGAGGCCAAGCCCGAGCCCACCGTGGCTCCCGAGGCCAACGCCGCCGAG
TCGTCTGAGTACGGTGTCACCGTCACTGTTCACCCCACCGTCGCTCCTGAGCTGAAGGTGCCTGA
GCAGGACGACGACTTCGAGACCACCACTTCCACCATCACTAGATTGGTGACTGTTACCGACAACG
GCGAGGAGCACCTCTCCACCGAGGAGTTCGTCAACCACTGCAACC
Right flanking sequence: Indices 167815 -- 168314
CTGCCGCCGAGGCCGCTGACCCCACTGAGGAGGATGTGTACGTCACTGTCACCAGAACCCTGACC
TCGTACATCCCCATTGAGGCCGAGTTCACTCATGATGGCACCACCGTCACCATCACCTCGATGGT
TCCCCAGGTCACTGAGGTCTGCGAGACTTTGTCCCAGCCCACCTTCTCTCCCACCGCTTCTGACG
ACGTCTGCACCGACTGCATCACCGTCACTGTCTACCCCGACAACCACCCCAAGGACGAGCCCTGC
ACCGTCTGCAAGGTTGTGACTTTGGTGCAGACTCCCTGCGAGTCTTCTGCTGCCGAGACCTCTGC
TGACTGCGAGTCCTCTGCTGCTGAGTCTTCTGCTGACGCCACCTCTGCTCCCGAGTCTTCTGCTG
CTGAGCTGACCGCTGCCGAGTCTTCTGCCGCCGAGTCTGCTCCTGCTGAGTCTTCTGCTGCTGAG
TCTGCTCCCGCTGAGTCGTCTGCTGCCGAGACCGAGGCTGCTCCC
Found at i:168138 original size:15 final size:15
Alignment explanation
Indices: 168113--168299 Score: 85
Period size: 15 Copynumber: 12.3 Consensus size: 15
168103 AGACTCCCTG
*
168113 CGAGTCTTCTGCTGC
1 CGAGTCCTCTGCTGC
*
168128 CGAGACCTCTGCTGAC
1 CGAGTCCTCTGCTG-C
168144 TGCGAGTCCTCTGCTGC
1 --CGAGTCCTCTGCTGC
* * *
168161 TGAGTCTTCTGCTGA
1 CGAGTCCTCTGCTGC
*** *
168176 CGCCACCTCTGCTCC
1 CGAGTCCTCTGCTGC
*
168191 CGAGTCTTCTGCTGC
1 CGAGTCCTCTGCTGC
* *
168206 TGAG--CTGACCGCTGC
1 CGAGTCCT--CTGCTGC
* *
168221 CGAGTCTTCTGCCGC
1 CGAGTCCTCTGCTGC
*
168236 CGAGT-CTGCTCCTGC
1 CGAGTCCT-CTGCTGC
* *
168251 TGAGTCTTCTGCTGC
1 CGAGTCCTCTGCTGC
* * *
168266 TGAGT-CTGCTCCCGC
1 CGAGTCCT-CTGCTGC
* *
168281 TGAGTCGTCTGCTGC
1 CGAGTCCTCTGCTGC
168296 CGAG
1 CGAG
168300 ACCGAGGCTG
Statistics
Matches: 123, Mismatches: 38, Indels: 22
0.67 0.21 0.12
Matches are distributed among these distances:
13 1 0.01
14 2 0.02
15 102 0.83
16 3 0.02
17 2 0.02
18 13 0.11
ACGTcount: A:0.09, C:0.35, G:0.27, T:0.28
Consensus pattern (15 bp):
CGAGTCCTCTGCTGC
Left flanking sequence: Indices 167613 -- 168112
GGTGTCACCGTCACTGTTCACCCCACCGTCGCTCCTGAGCTGAAGGTGCCTGAGCAGGACGACGA
CTTCGAGACCACCACTTCCACCATCACTAGATTGGTGACTGTTACCGACAACGGCGAGGAGCACC
TCTCCACCGAGGAGTTCGTCAACCACTGCAACCCCGAGACTGTTACCGAGACCGAGACCGTTACC
GTGACCGCTGCCGCCGAGGCCGCTGACCCCACTGAGGAGGATGTGTACGTCACTGTCACCAGAAC
CCTGACCTCGTACATCCCCATTGAGGCCGAGTTCACTCATGATGGCACCACCGTCACCATCACCT
CGATGGTTCCCCAGGTCACTGAGGTCTGCGAGACTTTGTCCCAGCCCACCTTCTCTCCCACCGCT
TCTGACGACGTCTGCACCGACTGCATCACCGTCACTGTCTACCCCGACAACCACCCCAAGGACGA
GCCCTGCACCGTCTGCAAGGTTGTGACTTTGGTGCAGACTCCCTG
Right flanking sequence: Indices 168300 -- 168799
ACCGAGGCTGCTCCCACTGAGGCTGCTCCCACTGTGACCGAGGCCGCTCCCACCGAGACTGAGGC
TGCTCCCACTGAGGCTGCTCCTACCGACGCTGCTGAGACCGATGCTGCTGCCCCCACTGAGGCTG
CTCCCACCGATGCTCCCGCCGAGACCGAGGCTGCTGCCCCTACTGACGCCGCTGCCGAGACTGAG
GCCGCCGAGCCCGCCCCTACCGACGCTGCTGCGCCGACTGAGGCTGCTCCCGAGCCCTCTGCTGC
TGCCTAAGCAGGCGCACGCCCTCACCTCTGCGTTCCGGGAGCTGAGGAAGGTAGGCTGCAGCTCG
ATAAAGGCTTCTTGATGAATCTCTTGCTACTGTCTTCCTCATCCCCCTTATTCCCTGCTCATTAC
TCGATGCGTATGCCGATCTGCTTTTCGATAAATGAATAAGCGGACGGTCATCAAACCACTCTATG
ACTTTTTGTTTCGTCTACCATTTTTGTATGTTTTTTTATGTTTTG
Found at i:168157 original size:33 final size:33
Alignment explanation
Indices: 168110--168176 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
168100 TGCAGACTCC
*
168110 CTGCGAGTCTTCTGCTGCCGAGACCTCTGCTGA
1 CTGCGAGTCCTCTGCTGCCGAGACCTCTGCTGA
* * *
168143 CTGCGAGTCCTCTGCTGCTGAGTCTTCTGCTGA
1 CTGCGAGTCCTCTGCTGCCGAGACCTCTGCTGA
168176 C
1 C
168177 GCCACCTCTG
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.10, C:0.33, G:0.27, T:0.30
Consensus pattern (33 bp):
CTGCGAGTCCTCTGCTGCCGAGACCTCTGCTGA
Left flanking sequence: Indices 167610 -- 168109
TACGGTGTCACCGTCACTGTTCACCCCACCGTCGCTCCTGAGCTGAAGGTGCCTGAGCAGGACGA
CGACTTCGAGACCACCACTTCCACCATCACTAGATTGGTGACTGTTACCGACAACGGCGAGGAGC
ACCTCTCCACCGAGGAGTTCGTCAACCACTGCAACCCCGAGACTGTTACCGAGACCGAGACCGTT
ACCGTGACCGCTGCCGCCGAGGCCGCTGACCCCACTGAGGAGGATGTGTACGTCACTGTCACCAG
AACCCTGACCTCGTACATCCCCATTGAGGCCGAGTTCACTCATGATGGCACCACCGTCACCATCA
CCTCGATGGTTCCCCAGGTCACTGAGGTCTGCGAGACTTTGTCCCAGCCCACCTTCTCTCCCACC
GCTTCTGACGACGTCTGCACCGACTGCATCACCGTCACTGTCTACCCCGACAACCACCCCAAGGA
CGAGCCCTGCACCGTCTGCAAGGTTGTGACTTTGGTGCAGACTCC
Right flanking sequence: Indices 168177 -- 168676
GCCACCTCTGCTCCCGAGTCTTCTGCTGCTGAGCTGACCGCTGCCGAGTCTTCTGCCGCCGAGTC
TGCTCCTGCTGAGTCTTCTGCTGCTGAGTCTGCTCCCGCTGAGTCGTCTGCTGCCGAGACCGAGG
CTGCTCCCACTGAGGCTGCTCCCACTGTGACCGAGGCCGCTCCCACCGAGACTGAGGCTGCTCCC
ACTGAGGCTGCTCCTACCGACGCTGCTGAGACCGATGCTGCTGCCCCCACTGAGGCTGCTCCCAC
CGATGCTCCCGCCGAGACCGAGGCTGCTGCCCCTACTGACGCCGCTGCCGAGACTGAGGCCGCCG
AGCCCGCCCCTACCGACGCTGCTGCGCCGACTGAGGCTGCTCCCGAGCCCTCTGCTGCTGCCTAA
GCAGGCGCACGCCCTCACCTCTGCGTTCCGGGAGCTGAGGAAGGTAGGCTGCAGCTCGATAAAGG
CTTCTTGATGAATCTCTTGCTACTGTCTTCCTCATCCCCCTTATT
Found at i:168224 original size:30 final size:30
Alignment explanation
Indices: 168190--168295 Score: 126
Period size: 30 Copynumber: 3.5 Consensus size: 30
168180 ACCTCTGCTC
168190 CCGAGTCTTCTGCTGCTGAG-CTGAC-CGCTG
1 CCGAGTCTTCTGCTGCTGAGTCTG-CTC-CTG
* *
168220 CCGAGTCTTCTGCCGCCGAGTCTGCTCCTG
1 CCGAGTCTTCTGCTGCTGAGTCTGCTCCTG
* *
168250 CTGAGTCTTCTGCTGCTGAGTCTGCTCCCG
1 CCGAGTCTTCTGCTGCTGAGTCTGCTCCTG
* *
168280 CTGAGTCGTCTGCTGC
1 CCGAGTCTTCTGCTGC
168296 CGAGACCGAG
Statistics
Matches: 67, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
30 63 0.94
31 4 0.06
ACGTcount: A:0.08, C:0.35, G:0.28, T:0.29
Consensus pattern (30 bp):
CCGAGTCTTCTGCTGCTGAGTCTGCTCCTG
Left flanking sequence: Indices 167690 -- 168189
CACTTCCACCATCACTAGATTGGTGACTGTTACCGACAACGGCGAGGAGCACCTCTCCACCGAGG
AGTTCGTCAACCACTGCAACCCCGAGACTGTTACCGAGACCGAGACCGTTACCGTGACCGCTGCC
GCCGAGGCCGCTGACCCCACTGAGGAGGATGTGTACGTCACTGTCACCAGAACCCTGACCTCGTA
CATCCCCATTGAGGCCGAGTTCACTCATGATGGCACCACCGTCACCATCACCTCGATGGTTCCCC
AGGTCACTGAGGTCTGCGAGACTTTGTCCCAGCCCACCTTCTCTCCCACCGCTTCTGACGACGTC
TGCACCGACTGCATCACCGTCACTGTCTACCCCGACAACCACCCCAAGGACGAGCCCTGCACCGT
CTGCAAGGTTGTGACTTTGGTGCAGACTCCCTGCGAGTCTTCTGCTGCCGAGACCTCTGCTGACT
GCGAGTCCTCTGCTGCTGAGTCTTCTGCTGACGCCACCTCTGCTC
Right flanking sequence: Indices 168296 -- 168795
CGAGACCGAGGCTGCTCCCACTGAGGCTGCTCCCACTGTGACCGAGGCCGCTCCCACCGAGACTG
AGGCTGCTCCCACTGAGGCTGCTCCTACCGACGCTGCTGAGACCGATGCTGCTGCCCCCACTGAG
GCTGCTCCCACCGATGCTCCCGCCGAGACCGAGGCTGCTGCCCCTACTGACGCCGCTGCCGAGAC
TGAGGCCGCCGAGCCCGCCCCTACCGACGCTGCTGCGCCGACTGAGGCTGCTCCCGAGCCCTCTG
CTGCTGCCTAAGCAGGCGCACGCCCTCACCTCTGCGTTCCGGGAGCTGAGGAAGGTAGGCTGCAG
CTCGATAAAGGCTTCTTGATGAATCTCTTGCTACTGTCTTCCTCATCCCCCTTATTCCCTGCTCA
TTACTCGATGCGTATGCCGATCTGCTTTTCGATAAATGAATAAGCGGACGGTCATCAAACCACTC
TATGACTTTTTGTTTCGTCTACCATTTTTGTATGTTTTTTTATGT
Found at i:168265 original size:45 final size:44
Alignment explanation
Indices: 168109--168265 Score: 131
Period size: 45 Copynumber: 3.5 Consensus size: 44
168099 GTGCAGACTC
*
168109 CCTGC-GAGTCTTCTGCTGCCGAGACCTCTGCTGACTGCGAGTCCTCT
1 CCTGCTGAGTCTTCTGCTGCCGAGACCTCTGCCG-C--CGAGT-CTCT
* * **
168156 GCTGCTGAGTCTTCTGCTGACGCCACCTCTGCTC-CCGAGTCTTCT
1 CCTGCTGAGTCTTCTGCTGCCGAGACCTCTGC-CGCCGAGTC-TCT
* * * * *
168201 GCTGCTGAG-CTGACCGCTGCCGAGTCTTCTGCCGCCGAGTCTGCT
1 CCTGCTGAGTCT-TCTGCTGCCGAGACCTCTGCCGCCGAGTCT-CT
168246 CCTGCTGAGTCTTCTGCTGC
1 CCTGCTGAGTCTTCTGCTGC
168266 TGAGTCTGCT
Statistics
Matches: 88, Mismatches: 15, Indels: 16
0.74 0.13 0.13
Matches are distributed among these distances:
44 5 0.06
45 53 0.60
46 2 0.02
47 5 0.06
48 23 0.26
ACGTcount: A:0.09, C:0.36, G:0.26, T:0.29
Consensus pattern (44 bp):
CCTGCTGAGTCTTCTGCTGCCGAGACCTCTGCCGCCGAGTCTCT
Left flanking sequence: Indices 167609 -- 168108
GTACGGTGTCACCGTCACTGTTCACCCCACCGTCGCTCCTGAGCTGAAGGTGCCTGAGCAGGACG
ACGACTTCGAGACCACCACTTCCACCATCACTAGATTGGTGACTGTTACCGACAACGGCGAGGAG
CACCTCTCCACCGAGGAGTTCGTCAACCACTGCAACCCCGAGACTGTTACCGAGACCGAGACCGT
TACCGTGACCGCTGCCGCCGAGGCCGCTGACCCCACTGAGGAGGATGTGTACGTCACTGTCACCA
GAACCCTGACCTCGTACATCCCCATTGAGGCCGAGTTCACTCATGATGGCACCACCGTCACCATC
ACCTCGATGGTTCCCCAGGTCACTGAGGTCTGCGAGACTTTGTCCCAGCCCACCTTCTCTCCCAC
CGCTTCTGACGACGTCTGCACCGACTGCATCACCGTCACTGTCTACCCCGACAACCACCCCAAGG
ACGAGCCCTGCACCGTCTGCAAGGTTGTGACTTTGGTGCAGACTC
Right flanking sequence: Indices 168266 -- 168765
TGAGTCTGCTCCCGCTGAGTCGTCTGCTGCCGAGACCGAGGCTGCTCCCACTGAGGCTGCTCCCA
CTGTGACCGAGGCCGCTCCCACCGAGACTGAGGCTGCTCCCACTGAGGCTGCTCCTACCGACGCT
GCTGAGACCGATGCTGCTGCCCCCACTGAGGCTGCTCCCACCGATGCTCCCGCCGAGACCGAGGC
TGCTGCCCCTACTGACGCCGCTGCCGAGACTGAGGCCGCCGAGCCCGCCCCTACCGACGCTGCTG
CGCCGACTGAGGCTGCTCCCGAGCCCTCTGCTGCTGCCTAAGCAGGCGCACGCCCTCACCTCTGC
GTTCCGGGAGCTGAGGAAGGTAGGCTGCAGCTCGATAAAGGCTTCTTGATGAATCTCTTGCTACT
GTCTTCCTCATCCCCCTTATTCCCTGCTCATTACTCGATGCGTATGCCGATCTGCTTTTCGATAA
ATGAATAAGCGGACGGTCATCAAACCACTCTATGACTTTTTGTTT
Found at i:168271 original size:45 final size:45
Alignment explanation
Indices: 168190--168286 Score: 106
Period size: 45 Copynumber: 2.2 Consensus size: 45
168180 ACCTCTGCTC
* * * *
168190 CCGAGTCTTCTGCTGCTGAGCTGACCGCTGCCGAGTCTTCTGCCG
1 CCGAGTCTGCTCCTGCTGAGCTGACCGCTGCCGAGTCTGCTCCCG
* * *
168235 CCGAGTCTGCTCCTGCTGAGTCT-TCTGCTGCTGAGTCTGCTCCCG
1 CCGAGTCTGCTCCTGCTGAG-CTGACCGCTGCCGAGTCTGCTCCCG
*
168280 CTGAGTC
1 CCGAGTC
168287 GTCTGCTGCC
Statistics
Matches: 43, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
45 41 0.95
46 2 0.05
ACGTcount: A:0.08, C:0.35, G:0.28, T:0.29
Consensus pattern (45 bp):
CCGAGTCTGCTCCTGCTGAGCTGACCGCTGCCGAGTCTGCTCCCG
Left flanking sequence: Indices 167690 -- 168189
CACTTCCACCATCACTAGATTGGTGACTGTTACCGACAACGGCGAGGAGCACCTCTCCACCGAGG
AGTTCGTCAACCACTGCAACCCCGAGACTGTTACCGAGACCGAGACCGTTACCGTGACCGCTGCC
GCCGAGGCCGCTGACCCCACTGAGGAGGATGTGTACGTCACTGTCACCAGAACCCTGACCTCGTA
CATCCCCATTGAGGCCGAGTTCACTCATGATGGCACCACCGTCACCATCACCTCGATGGTTCCCC
AGGTCACTGAGGTCTGCGAGACTTTGTCCCAGCCCACCTTCTCTCCCACCGCTTCTGACGACGTC
TGCACCGACTGCATCACCGTCACTGTCTACCCCGACAACCACCCCAAGGACGAGCCCTGCACCGT
CTGCAAGGTTGTGACTTTGGTGCAGACTCCCTGCGAGTCTTCTGCTGCCGAGACCTCTGCTGACT
GCGAGTCCTCTGCTGCTGAGTCTTCTGCTGACGCCACCTCTGCTC
Right flanking sequence: Indices 168287 -- 168786
GTCTGCTGCCGAGACCGAGGCTGCTCCCACTGAGGCTGCTCCCACTGTGACCGAGGCCGCTCCCA
CCGAGACTGAGGCTGCTCCCACTGAGGCTGCTCCTACCGACGCTGCTGAGACCGATGCTGCTGCC
CCCACTGAGGCTGCTCCCACCGATGCTCCCGCCGAGACCGAGGCTGCTGCCCCTACTGACGCCGC
TGCCGAGACTGAGGCCGCCGAGCCCGCCCCTACCGACGCTGCTGCGCCGACTGAGGCTGCTCCCG
AGCCCTCTGCTGCTGCCTAAGCAGGCGCACGCCCTCACCTCTGCGTTCCGGGAGCTGAGGAAGGT
AGGCTGCAGCTCGATAAAGGCTTCTTGATGAATCTCTTGCTACTGTCTTCCTCATCCCCCTTATT
CCCTGCTCATTACTCGATGCGTATGCCGATCTGCTTTTCGATAAATGAATAAGCGGACGGTCATC
AAACCACTCTATGACTTTTTGTTTCGTCTACCATTTTTGTATGTT
Found at i:168321 original size:15 final size:15
Alignment explanation
Indices: 168303--168333 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
168293 TGCCGAGACC
168303 GAGGCTGCTCCCACT
1 GAGGCTGCTCCCACT
168318 GAGGCTGCTCCCACT
1 GAGGCTGCTCCCACT
168333 G
1 G
168334 TGACCGAGGC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.13, C:0.39, G:0.29, T:0.19
Consensus pattern (15 bp):
GAGGCTGCTCCCACT
Left flanking sequence: Indices 167803 -- 168302
TTACCGTGACCGCTGCCGCCGAGGCCGCTGACCCCACTGAGGAGGATGTGTACGTCACTGTCACC
AGAACCCTGACCTCGTACATCCCCATTGAGGCCGAGTTCACTCATGATGGCACCACCGTCACCAT
CACCTCGATGGTTCCCCAGGTCACTGAGGTCTGCGAGACTTTGTCCCAGCCCACCTTCTCTCCCA
CCGCTTCTGACGACGTCTGCACCGACTGCATCACCGTCACTGTCTACCCCGACAACCACCCCAAG
GACGAGCCCTGCACCGTCTGCAAGGTTGTGACTTTGGTGCAGACTCCCTGCGAGTCTTCTGCTGC
CGAGACCTCTGCTGACTGCGAGTCCTCTGCTGCTGAGTCTTCTGCTGACGCCACCTCTGCTCCCG
AGTCTTCTGCTGCTGAGCTGACCGCTGCCGAGTCTTCTGCCGCCGAGTCTGCTCCTGCTGAGTCT
TCTGCTGCTGAGTCTGCTCCCGCTGAGTCGTCTGCTGCCGAGACC
Right flanking sequence: Indices 168334 -- 168833
TGACCGAGGCCGCTCCCACCGAGACTGAGGCTGCTCCCACTGAGGCTGCTCCTACCGACGCTGCT
GAGACCGATGCTGCTGCCCCCACTGAGGCTGCTCCCACCGATGCTCCCGCCGAGACCGAGGCTGC
TGCCCCTACTGACGCCGCTGCCGAGACTGAGGCCGCCGAGCCCGCCCCTACCGACGCTGCTGCGC
CGACTGAGGCTGCTCCCGAGCCCTCTGCTGCTGCCTAAGCAGGCGCACGCCCTCACCTCTGCGTT
CCGGGAGCTGAGGAAGGTAGGCTGCAGCTCGATAAAGGCTTCTTGATGAATCTCTTGCTACTGTC
TTCCTCATCCCCCTTATTCCCTGCTCATTACTCGATGCGTATGCCGATCTGCTTTTCGATAAATG
AATAAGCGGACGGTCATCAAACCACTCTATGACTTTTTGTTTCGTCTACCATTTTTGTATGTTTT
TTTATGTTTTGGGATGGGGCTAGGCTTTAGATTATCTGACTACGG
Found at i:168348 original size:21 final size:21
Alignment explanation
Indices: 168297--168377 Score: 84
Period size: 21 Copynumber: 4.1 Consensus size: 21
168287 GTCTGCTGCC
168297 GAGACCGAGGCTGCTCCCACT
1 GAGACCGAGGCTGCTCCCACT
168318 ------GAGGCTGCTCCCACT
1 GAGACCGAGGCTGCTCCCACT
* * *
168333 GTGACCGAGGCCGCTCCCACC
1 GAGACCGAGGCTGCTCCCACT
*
168354 GAGACTGAGGCTGCTCCCACT
1 GAGACCGAGGCTGCTCCCACT
168375 GAG
1 GAG
168378 GCTGCTCCTA
Statistics
Matches: 48, Mismatches: 6, Indels: 12
0.73 0.09 0.18
Matches are distributed among these distances:
15 15 0.31
21 33 0.69
ACGTcount: A:0.17, C:0.38, G:0.30, T:0.15
Consensus pattern (21 bp):
GAGACCGAGGCTGCTCCCACT
Left flanking sequence: Indices 167797 -- 168296
AGACCGTTACCGTGACCGCTGCCGCCGAGGCCGCTGACCCCACTGAGGAGGATGTGTACGTCACT
GTCACCAGAACCCTGACCTCGTACATCCCCATTGAGGCCGAGTTCACTCATGATGGCACCACCGT
CACCATCACCTCGATGGTTCCCCAGGTCACTGAGGTCTGCGAGACTTTGTCCCAGCCCACCTTCT
CTCCCACCGCTTCTGACGACGTCTGCACCGACTGCATCACCGTCACTGTCTACCCCGACAACCAC
CCCAAGGACGAGCCCTGCACCGTCTGCAAGGTTGTGACTTTGGTGCAGACTCCCTGCGAGTCTTC
TGCTGCCGAGACCTCTGCTGACTGCGAGTCCTCTGCTGCTGAGTCTTCTGCTGACGCCACCTCTG
CTCCCGAGTCTTCTGCTGCTGAGCTGACCGCTGCCGAGTCTTCTGCCGCCGAGTCTGCTCCTGCT
GAGTCTTCTGCTGCTGAGTCTGCTCCCGCTGAGTCGTCTGCTGCC
Right flanking sequence: Indices 168378 -- 168877
GCTGCTCCTACCGACGCTGCTGAGACCGATGCTGCTGCCCCCACTGAGGCTGCTCCCACCGATGC
TCCCGCCGAGACCGAGGCTGCTGCCCCTACTGACGCCGCTGCCGAGACTGAGGCCGCCGAGCCCG
CCCCTACCGACGCTGCTGCGCCGACTGAGGCTGCTCCCGAGCCCTCTGCTGCTGCCTAAGCAGGC
GCACGCCCTCACCTCTGCGTTCCGGGAGCTGAGGAAGGTAGGCTGCAGCTCGATAAAGGCTTCTT
GATGAATCTCTTGCTACTGTCTTCCTCATCCCCCTTATTCCCTGCTCATTACTCGATGCGTATGC
CGATCTGCTTTTCGATAAATGAATAAGCGGACGGTCATCAAACCACTCTATGACTTTTTGTTTCG
TCTACCATTTTTGTATGTTTTTTTATGTTTTGGGATGGGGCTAGGCTTTAGATTATCTGACTACG
GTTATACCTATAGGAATGAATGATTGATAAAAACATGTAAATGCT
Done.