Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: scaffold88
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 125553
ACGTcount: A:0.22, C:0.29, G:0.28, T:0.22
Found at i:1906 original size:20 final size:20
Alignment explanation
Indices: 1878--1940 Score: 81
Period size: 20 Copynumber: 3.1 Consensus size: 20
1868 ACGATCATTA
* *
1878 TAGAAGCTTAGATTGACCAT
1 TAGAGGCTTGGATTGACCAT
1898 TAGAGGCTTTGGATTGACCAT
1 TAGAGGC-TTGGATTGACCAT
* *
1919 TAGAGGTTTGGATTGAGCAT
1 TAGAGGCTTGGATTGACCAT
1939 TA
1 TA
1941 TAGAAGGCTA
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
20 20 0.53
21 18 0.47
ACGTcount: A:0.29, C:0.11, G:0.27, T:0.33
Consensus pattern (20 bp):
TAGAGGCTTGGATTGACCAT
Left flanking sequence: Indices 1378 -- 1877
ACTACCTCCAGGACGCGGTGGACGGGGTGCCCGAGTACGTGGTGCCGTTCGAGACGTTGCGGGCG
CTCTGCGAGGAGTACGGGATGATTCTCCGCTACAAGAAGAACTTTATCGACATGTTCAATGCCGA
GATCCCGAAGTACTTTAAAAGGCTCAACAAGAACATGATCGAGGCCATGCAGCGCGAGGACGGCA
AGTACGGGGCCGAGGGGGCGCAGAAGGAGGCGGTGGCGTTCTACTTGGCGTTTGCGTTTGAGAAA
ATGGGATAGAGGGCTGCCGTGAGGATATGGGTTAGTATCCATCGAACTACTGTTTAATGTGATTG
CGTTGGTCTAGGCTTAGGTTAGACTGAATTTGAGCTGATCTAAGCTGATCTCACCAGTTCATCAG
TGGAAGCTGAGATGCCTGTCCGGCTCAAGTATCAGCACCACTATCTACCTCGGAAAAGATATGAT
AGTTCCAAAGAGTCTACGTACCTGTCATTTAATTAACGATCATTA
Right flanking sequence: Indices 1941 -- 2440
TAGAAGGCTAGGGTGAACCATTTTCTTAAGGGTTCACGATACAGACTATACAAATTATGTAAAGA
CTTACACAAGAGTTAAGAAAACGTTCTGAACGTTTAGAAAACTGTGGTTCCCAATACTTGATAAT
AGAAGGCCTCGGATAGACCATTATAGAAAGCTTCGGATTGACCATTATAGGGGGCTATGGATTGA
CCAGGCTTCGGTCTGACCATTATAGACGGCTTCAGATTGACCATTAGAGAGGCTTGGATTGACCA
TAGAGGCTTGGATCGACCATTCTAAAAGGCTCGGATCGACCATTATAGAACGCATCCGAACCTTG
TTTGCCCGTAGGTGCCATTAGCCCAATTAGCATCCGGCTTAGATAGCCAAAAACGCCGTGGCGGC
TCCAGCGGAGCTTATTCGTGGCGGCTAGAGCTAAGCTTATTCGTGGCGGCTATCCCATACCTTAT
TGAAACGGTCTGGCCCGGAGAGGTCCCTGATCGTATCTCCGAACG
Found at i:1914 original size:21 final size:20
Alignment explanation
Indices: 1888--1940 Score: 88
Period size: 21 Copynumber: 2.6 Consensus size: 20
1878 TAGAAGCTTA
1888 GATTGACCATTAGAGGCTTTG
1 GATTGACCATTAGAGG-TTTG
1909 GATTGACCATTAGAGGTTTG
1 GATTGACCATTAGAGGTTTG
*
1929 GATTGAGCATTA
1 GATTGACCATTA
1941 TAGAAGGCTA
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
20 15 0.48
21 16 0.52
ACGTcount: A:0.26, C:0.11, G:0.28, T:0.34
Consensus pattern (20 bp):
GATTGACCATTAGAGGTTTG
Left flanking sequence: Indices 1388 -- 1887
GGACGCGGTGGACGGGGTGCCCGAGTACGTGGTGCCGTTCGAGACGTTGCGGGCGCTCTGCGAGG
AGTACGGGATGATTCTCCGCTACAAGAAGAACTTTATCGACATGTTCAATGCCGAGATCCCGAAG
TACTTTAAAAGGCTCAACAAGAACATGATCGAGGCCATGCAGCGCGAGGACGGCAAGTACGGGGC
CGAGGGGGCGCAGAAGGAGGCGGTGGCGTTCTACTTGGCGTTTGCGTTTGAGAAAATGGGATAGA
GGGCTGCCGTGAGGATATGGGTTAGTATCCATCGAACTACTGTTTAATGTGATTGCGTTGGTCTA
GGCTTAGGTTAGACTGAATTTGAGCTGATCTAAGCTGATCTCACCAGTTCATCAGTGGAAGCTGA
GATGCCTGTCCGGCTCAAGTATCAGCACCACTATCTACCTCGGAAAAGATATGATAGTTCCAAAG
AGTCTACGTACCTGTCATTTAATTAACGATCATTATAGAAGCTTA
Right flanking sequence: Indices 1941 -- 2440
TAGAAGGCTAGGGTGAACCATTTTCTTAAGGGTTCACGATACAGACTATACAAATTATGTAAAGA
CTTACACAAGAGTTAAGAAAACGTTCTGAACGTTTAGAAAACTGTGGTTCCCAATACTTGATAAT
AGAAGGCCTCGGATAGACCATTATAGAAAGCTTCGGATTGACCATTATAGGGGGCTATGGATTGA
CCAGGCTTCGGTCTGACCATTATAGACGGCTTCAGATTGACCATTAGAGAGGCTTGGATTGACCA
TAGAGGCTTGGATCGACCATTCTAAAAGGCTCGGATCGACCATTATAGAACGCATCCGAACCTTG
TTTGCCCGTAGGTGCCATTAGCCCAATTAGCATCCGGCTTAGATAGCCAAAAACGCCGTGGCGGC
TCCAGCGGAGCTTATTCGTGGCGGCTAGAGCTAAGCTTATTCGTGGCGGCTATCCCATACCTTAT
TGAAACGGTCTGGCCCGGAGAGGTCCCTGATCGTATCTCCGAACG
Found at i:2106 original size:24 final size:24
Alignment explanation
Indices: 2069--2120 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
2059 ATACTTGATA
*
2069 ATAGAAGGCCTCGGATAGACCATT
1 ATAGAAAGCCTCGGATAGACCATT
* *
2093 ATAGAAAGCTTCGGATTGACCATT
1 ATAGAAAGCCTCGGATAGACCATT
2117 ATAG
1 ATAG
2121 GGGGCTATGG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.35, C:0.17, G:0.23, T:0.25
Consensus pattern (24 bp):
ATAGAAAGCCTCGGATAGACCATT
Left flanking sequence: Indices 1569 -- 2068
GGCAAGTACGGGGCCGAGGGGGCGCAGAAGGAGGCGGTGGCGTTCTACTTGGCGTTTGCGTTTGA
GAAAATGGGATAGAGGGCTGCCGTGAGGATATGGGTTAGTATCCATCGAACTACTGTTTAATGTG
ATTGCGTTGGTCTAGGCTTAGGTTAGACTGAATTTGAGCTGATCTAAGCTGATCTCACCAGTTCA
TCAGTGGAAGCTGAGATGCCTGTCCGGCTCAAGTATCAGCACCACTATCTACCTCGGAAAAGATA
TGATAGTTCCAAAGAGTCTACGTACCTGTCATTTAATTAACGATCATTATAGAAGCTTAGATTGA
CCATTAGAGGCTTTGGATTGACCATTAGAGGTTTGGATTGAGCATTATAGAAGGCTAGGGTGAAC
CATTTTCTTAAGGGTTCACGATACAGACTATACAAATTATGTAAAGACTTACACAAGAGTTAAGA
AAACGTTCTGAACGTTTAGAAAACTGTGGTTCCCAATACTTGATA
Right flanking sequence: Indices 2121 -- 2620
GGGGCTATGGATTGACCAGGCTTCGGTCTGACCATTATAGACGGCTTCAGATTGACCATTAGAGA
GGCTTGGATTGACCATAGAGGCTTGGATCGACCATTCTAAAAGGCTCGGATCGACCATTATAGAA
CGCATCCGAACCTTGTTTGCCCGTAGGTGCCATTAGCCCAATTAGCATCCGGCTTAGATAGCCAA
AAACGCCGTGGCGGCTCCAGCGGAGCTTATTCGTGGCGGCTAGAGCTAAGCTTATTCGTGGCGGC
TATCCCATACCTTATTGAAACGGTCTGGCCCGGAGAGGTCCCTGATCGTATCTCCGAACGGACAA
TCAATGTAACCTGGACACAAAGCTGGGTGGGGAAGTGGAGAATCAAAACTGGGCCCTTTTGTTAG
ACAACTGCCCTGGGACCAGCCCGGGAACAGCCCTAGAACCAGCCCAGGACCAGCCCAGGACCCTG
TTCCTGACCCTAGCGAATAGACTTTTGAATCTGCGGGACGATTCT
Found at i:2174 original size:40 final size:40
Alignment explanation
Indices: 2100--2178 Score: 99
Period size: 40 Copynumber: 2.0 Consensus size: 40
2090 ATTATAGAAA
** *
2100 GCTTCGGATTGACCATTATAGGGGGCTATGGATTGACCAG
1 GCTTCGGATTGACCATTATAGACGGCTATAGATTGACCAG
2140 GCTTCGG-TCTGACCATTATAGACGGCT-TCAGATTGACCA
1 GCTTCGGAT-TGACCATTATAGACGGCTAT-AGATTGACCA
2179 TTAGAGAGGC
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
39 2 0.06
40 32 0.94
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.28
Consensus pattern (40 bp):
GCTTCGGATTGACCATTATAGACGGCTATAGATTGACCAG
Left flanking sequence: Indices 1600 -- 2099
AGGCGGTGGCGTTCTACTTGGCGTTTGCGTTTGAGAAAATGGGATAGAGGGCTGCCGTGAGGATA
TGGGTTAGTATCCATCGAACTACTGTTTAATGTGATTGCGTTGGTCTAGGCTTAGGTTAGACTGA
ATTTGAGCTGATCTAAGCTGATCTCACCAGTTCATCAGTGGAAGCTGAGATGCCTGTCCGGCTCA
AGTATCAGCACCACTATCTACCTCGGAAAAGATATGATAGTTCCAAAGAGTCTACGTACCTGTCA
TTTAATTAACGATCATTATAGAAGCTTAGATTGACCATTAGAGGCTTTGGATTGACCATTAGAGG
TTTGGATTGAGCATTATAGAAGGCTAGGGTGAACCATTTTCTTAAGGGTTCACGATACAGACTAT
ACAAATTATGTAAAGACTTACACAAGAGTTAAGAAAACGTTCTGAACGTTTAGAAAACTGTGGTT
CCCAATACTTGATAATAGAAGGCCTCGGATAGACCATTATAGAAA
Right flanking sequence: Indices 2179 -- 2678
TTAGAGAGGCTTGGATTGACCATAGAGGCTTGGATCGACCATTCTAAAAGGCTCGGATCGACCAT
TATAGAACGCATCCGAACCTTGTTTGCCCGTAGGTGCCATTAGCCCAATTAGCATCCGGCTTAGA
TAGCCAAAAACGCCGTGGCGGCTCCAGCGGAGCTTATTCGTGGCGGCTAGAGCTAAGCTTATTCG
TGGCGGCTATCCCATACCTTATTGAAACGGTCTGGCCCGGAGAGGTCCCTGATCGTATCTCCGAA
CGGACAATCAATGTAACCTGGACACAAAGCTGGGTGGGGAAGTGGAGAATCAAAACTGGGCCCTT
TTGTTAGACAACTGCCCTGGGACCAGCCCGGGAACAGCCCTAGAACCAGCCCAGGACCAGCCCAG
GACCCTGTTCCTGACCCTAGCGAATAGACTTTTGAATCTGCGGGACGATTCTAGAGCAGAAAGCC
AAAAGCTTAAACGAAATGGTTGCAGACGGGTCGGGACACCACTGG
Found at i:2176 original size:24 final size:22
Alignment explanation
Indices: 2149--2221 Score: 71
Period size: 19 Copynumber: 3.4 Consensus size: 22
2139 GGCTTCGGTC
*
2149 TGACCATTATAGACGGCTTCAGAT
1 TGACCATTAGAGA-GGCTT-AGAT
*
2173 TGACCATTAGAGAGGCTTGGAT
1 TGACCATTAGAGAGGCTTAGAT
*
2195 TGACCA-T--AGAGGCTTGGAT
1 TGACCATTAGAGAGGCTTAGAT
*
2214 CGACCATT
1 TGACCATT
2222 CTAAAAGGCT
Statistics
Matches: 45, Mismatches: 3, Indels: 6
0.83 0.06 0.11
Matches are distributed among these distances:
19 17 0.38
20 1 0.02
21 1 0.02
22 9 0.20
23 5 0.11
24 12 0.27
ACGTcount: A:0.27, C:0.19, G:0.26, T:0.27
Consensus pattern (22 bp):
TGACCATTAGAGAGGCTTAGAT
Left flanking sequence: Indices 1649 -- 2148
GGCTGCCGTGAGGATATGGGTTAGTATCCATCGAACTACTGTTTAATGTGATTGCGTTGGTCTAG
GCTTAGGTTAGACTGAATTTGAGCTGATCTAAGCTGATCTCACCAGTTCATCAGTGGAAGCTGAG
ATGCCTGTCCGGCTCAAGTATCAGCACCACTATCTACCTCGGAAAAGATATGATAGTTCCAAAGA
GTCTACGTACCTGTCATTTAATTAACGATCATTATAGAAGCTTAGATTGACCATTAGAGGCTTTG
GATTGACCATTAGAGGTTTGGATTGAGCATTATAGAAGGCTAGGGTGAACCATTTTCTTAAGGGT
TCACGATACAGACTATACAAATTATGTAAAGACTTACACAAGAGTTAAGAAAACGTTCTGAACGT
TTAGAAAACTGTGGTTCCCAATACTTGATAATAGAAGGCCTCGGATAGACCATTATAGAAAGCTT
CGGATTGACCATTATAGGGGGCTATGGATTGACCAGGCTTCGGTC
Right flanking sequence: Indices 2222 -- 2721
CTAAAAGGCTCGGATCGACCATTATAGAACGCATCCGAACCTTGTTTGCCCGTAGGTGCCATTAG
CCCAATTAGCATCCGGCTTAGATAGCCAAAAACGCCGTGGCGGCTCCAGCGGAGCTTATTCGTGG
CGGCTAGAGCTAAGCTTATTCGTGGCGGCTATCCCATACCTTATTGAAACGGTCTGGCCCGGAGA
GGTCCCTGATCGTATCTCCGAACGGACAATCAATGTAACCTGGACACAAAGCTGGGTGGGGAAGT
GGAGAATCAAAACTGGGCCCTTTTGTTAGACAACTGCCCTGGGACCAGCCCGGGAACAGCCCTAG
AACCAGCCCAGGACCAGCCCAGGACCCTGTTCCTGACCCTAGCGAATAGACTTTTGAATCTGCGG
GACGATTCTAGAGCAGAAAGCCAAAAGCTTAAACGAAATGGTTGCAGACGGGTCGGGACACCACT
GGTGGGTGTCCACAGGCTGGCAGCACGTTTCTGGGGTAAAAGCTG
Found at i:2195 original size:22 final size:21
Alignment explanation
Indices: 2149--2245 Score: 81
Period size: 23 Copynumber: 4.4 Consensus size: 21
2139 GGCTTCGGTC
*
2149 TGACCATTATAGACGGCTTCAGAT
1 TGACCATTA-AGA-GGCTT-GGAT
2173 TGACCATTAGAGAGGCTTGGAT
1 TGACCATTA-AGAGGCTTGGAT
2195 TGACCA-T-AGAGGCTTGGAT
1 TGACCATTAAGAGGCTTGGAT
* * *
2214 CGACCATTCTAAAAGGCTCGGAT
1 TGACCA-T-TAAGAGGCTTGGAT
*
2237 CGACCATTA
1 TGACCATTA
2246 TAGAACGCAT
Statistics
Matches: 64, Mismatches: 5, Indels: 11
0.80 0.06 0.14
Matches are distributed among these distances:
19 17 0.27
21 3 0.05
22 11 0.17
23 21 0.33
24 12 0.19
ACGTcount: A:0.29, C:0.21, G:0.25, T:0.26
Consensus pattern (21 bp):
TGACCATTAAGAGGCTTGGAT
Left flanking sequence: Indices 1649 -- 2148
GGCTGCCGTGAGGATATGGGTTAGTATCCATCGAACTACTGTTTAATGTGATTGCGTTGGTCTAG
GCTTAGGTTAGACTGAATTTGAGCTGATCTAAGCTGATCTCACCAGTTCATCAGTGGAAGCTGAG
ATGCCTGTCCGGCTCAAGTATCAGCACCACTATCTACCTCGGAAAAGATATGATAGTTCCAAAGA
GTCTACGTACCTGTCATTTAATTAACGATCATTATAGAAGCTTAGATTGACCATTAGAGGCTTTG
GATTGACCATTAGAGGTTTGGATTGAGCATTATAGAAGGCTAGGGTGAACCATTTTCTTAAGGGT
TCACGATACAGACTATACAAATTATGTAAAGACTTACACAAGAGTTAAGAAAACGTTCTGAACGT
TTAGAAAACTGTGGTTCCCAATACTTGATAATAGAAGGCCTCGGATAGACCATTATAGAAAGCTT
CGGATTGACCATTATAGGGGGCTATGGATTGACCAGGCTTCGGTC
Right flanking sequence: Indices 2246 -- 2745
TAGAACGCATCCGAACCTTGTTTGCCCGTAGGTGCCATTAGCCCAATTAGCATCCGGCTTAGATA
GCCAAAAACGCCGTGGCGGCTCCAGCGGAGCTTATTCGTGGCGGCTAGAGCTAAGCTTATTCGTG
GCGGCTATCCCATACCTTATTGAAACGGTCTGGCCCGGAGAGGTCCCTGATCGTATCTCCGAACG
GACAATCAATGTAACCTGGACACAAAGCTGGGTGGGGAAGTGGAGAATCAAAACTGGGCCCTTTT
GTTAGACAACTGCCCTGGGACCAGCCCGGGAACAGCCCTAGAACCAGCCCAGGACCAGCCCAGGA
CCCTGTTCCTGACCCTAGCGAATAGACTTTTGAATCTGCGGGACGATTCTAGAGCAGAAAGCCAA
AAGCTTAAACGAAATGGTTGCAGACGGGTCGGGACACCACTGGTGGGTGTCCACAGGCTGGCAGC
ACGTTTCTGGGGTAAAAGCTGGAGGTTCGTGGGGTGCGTCGTAGG
Found at i:2351 original size:25 final size:25
Alignment explanation
Indices: 2322--2382 Score: 86
Period size: 25 Copynumber: 2.4 Consensus size: 25
2312 CCAAAAACGC
* *
2322 CGTGGCGGCTCCAGCGGAGCTTATT
1 CGTGGCGGCTACAGCGAAGCTTATT
* *
2347 CGTGGCGGCTAGAGCTAAGCTTATT
1 CGTGGCGGCTACAGCGAAGCTTATT
2372 CGTGGCGGCTA
1 CGTGGCGGCTA
2383 TCCCATACCT
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 32 1.00
ACGTcount: A:0.15, C:0.25, G:0.36, T:0.25
Consensus pattern (25 bp):
CGTGGCGGCTACAGCGAAGCTTATT
Left flanking sequence: Indices 1822 -- 2321
AAAGATATGATAGTTCCAAAGAGTCTACGTACCTGTCATTTAATTAACGATCATTATAGAAGCTT
AGATTGACCATTAGAGGCTTTGGATTGACCATTAGAGGTTTGGATTGAGCATTATAGAAGGCTAG
GGTGAACCATTTTCTTAAGGGTTCACGATACAGACTATACAAATTATGTAAAGACTTACACAAGA
GTTAAGAAAACGTTCTGAACGTTTAGAAAACTGTGGTTCCCAATACTTGATAATAGAAGGCCTCG
GATAGACCATTATAGAAAGCTTCGGATTGACCATTATAGGGGGCTATGGATTGACCAGGCTTCGG
TCTGACCATTATAGACGGCTTCAGATTGACCATTAGAGAGGCTTGGATTGACCATAGAGGCTTGG
ATCGACCATTCTAAAAGGCTCGGATCGACCATTATAGAACGCATCCGAACCTTGTTTGCCCGTAG
GTGCCATTAGCCCAATTAGCATCCGGCTTAGATAGCCAAAAACGC
Right flanking sequence: Indices 2383 -- 2882
TCCCATACCTTATTGAAACGGTCTGGCCCGGAGAGGTCCCTGATCGTATCTCCGAACGGACAATC
AATGTAACCTGGACACAAAGCTGGGTGGGGAAGTGGAGAATCAAAACTGGGCCCTTTTGTTAGAC
AACTGCCCTGGGACCAGCCCGGGAACAGCCCTAGAACCAGCCCAGGACCAGCCCAGGACCCTGTT
CCTGACCCTAGCGAATAGACTTTTGAATCTGCGGGACGATTCTAGAGCAGAAAGCCAAAAGCTTA
AACGAAATGGTTGCAGACGGGTCGGGACACCACTGGTGGGTGTCCACAGGCTGGCAGCACGTTTC
TGGGGTAAAAGCTGGAGGTTCGTGGGGTGCGTCGTAGGCGAGCTTCGTTGAGGCAGGAGGAAGCG
ACGCAATGAGCTGGGATGGCGGGGGATCGCCAGGGGCCGTGGGGATTGTGGACGGGTATAATGAG
GGCTAGGGTGGTGGAGAAACGGCGTGTTGCGGGTAGAAAATTTCT
Found at i:2567 original size:11 final size:11
Alignment explanation
Indices: 2523--2572 Score: 64
Period size: 11 Copynumber: 4.5 Consensus size: 11
2513 AACTGCCCTG
*
2523 GGACCAGCCCG
1 GGACCAGCCCA
*
2534 GGAACAGCCCTA
1 GGACCAGCCC-A
*
2546 GAACCAGCCCA
1 GGACCAGCCCA
2557 GGACCAGCCCA
1 GGACCAGCCCA
2568 GGACC
1 GGACC
2573 CTGTTCCTGA
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
11 25 0.76
12 8 0.24
ACGTcount: A:0.28, C:0.42, G:0.28, T:0.02
Consensus pattern (11 bp):
GGACCAGCCCA
Left flanking sequence: Indices 2023 -- 2522
AAAACGTTCTGAACGTTTAGAAAACTGTGGTTCCCAATACTTGATAATAGAAGGCCTCGGATAGA
CCATTATAGAAAGCTTCGGATTGACCATTATAGGGGGCTATGGATTGACCAGGCTTCGGTCTGAC
CATTATAGACGGCTTCAGATTGACCATTAGAGAGGCTTGGATTGACCATAGAGGCTTGGATCGAC
CATTCTAAAAGGCTCGGATCGACCATTATAGAACGCATCCGAACCTTGTTTGCCCGTAGGTGCCA
TTAGCCCAATTAGCATCCGGCTTAGATAGCCAAAAACGCCGTGGCGGCTCCAGCGGAGCTTATTC
GTGGCGGCTAGAGCTAAGCTTATTCGTGGCGGCTATCCCATACCTTATTGAAACGGTCTGGCCCG
GAGAGGTCCCTGATCGTATCTCCGAACGGACAATCAATGTAACCTGGACACAAAGCTGGGTGGGG
AAGTGGAGAATCAAAACTGGGCCCTTTTGTTAGACAACTGCCCTG
Right flanking sequence: Indices 2573 -- 3072
CTGTTCCTGACCCTAGCGAATAGACTTTTGAATCTGCGGGACGATTCTAGAGCAGAAAGCCAAAA
GCTTAAACGAAATGGTTGCAGACGGGTCGGGACACCACTGGTGGGTGTCCACAGGCTGGCAGCAC
GTTTCTGGGGTAAAAGCTGGAGGTTCGTGGGGTGCGTCGTAGGCGAGCTTCGTTGAGGCAGGAGG
AAGCGACGCAATGAGCTGGGATGGCGGGGGATCGCCAGGGGCCGTGGGGATTGTGGACGGGTATA
ATGAGGGCTAGGGTGGTGGAGAAACGGCGTGTTGCGGGTAGAAAATTTCTCTGGGCTCGAGGGAG
CCGTGTGGGGCCTGTTTGGTATTTTTCTGGCGGGAACTGGGCGAGCTGGTGGTGGATGTAGCGGT
AATCAACGAAAATCCGACGAGATTGGAGGCGAAAAAAGCAAATCGCCACGGGAGCCGGCTCCACC
CACCCCTGCTCCACGAAAGTGAATTTTTCTAGCGCTTGTTCCGTG
Found at i:4605 original size:20 final size:20
Alignment explanation
Indices: 4571--4624 Score: 65
Period size: 21 Copynumber: 2.6 Consensus size: 20
4561 CGTTCGATGT
4571 GGGTGTGGGAGGGTGGTGGA
1 GGGTGTGGGAGGGTGGTGGA
4591 GGGTGGTGGGA-GGTGGTGGGA
1 GGGT-GTGGGAGGGTGGT-GGA
*
4612 GGTGTTTGGGAGG
1 GG-GTGTGGGAGG
4625 TGTATGAGAG
Statistics
Matches: 29, Mismatches: 1, Indels: 6
0.81 0.03 0.17
Matches are distributed among these distances:
20 10 0.34
21 16 0.55
22 3 0.10
ACGTcount: A:0.09, C:0.00, G:0.69, T:0.22
Consensus pattern (20 bp):
GGGTGTGGGAGGGTGGTGGA
Left flanking sequence: Indices 4071 -- 4570
CTAATCCACCACCGCTGCGCCCGTAAATGCGCTCCAGCGATCCTCTGGTCATCGTAATGCATGGC
GTGTTCATTGGCAAAGCAACAATAGCCGTCGGACGGCAATTAGCCCGGTTAGGTGTCGCGGGCCT
CGTAACGGGAAAAACCGTGGCCACCACTAGCCCCATGTGATGACCACCACGTAAACGCTGGCGTC
TGCCCAGCACCGTTTGCACCGGGTTTCGTGGCTGCTGTCGGTGTGGATTGCGAGGCGGTGACGAT
GCATACAGAAAAGGTTAATCGAGGCTCGAGCCACGGTGCTTGTGCATGATGGGCCCTGGTAGTGG
GCCCACTACGGCAGCAGGGCAGCCCAGGCACCCGGGTGTTGCCAGAAAACGAGTCTAATTTCCGC
AGGACCCGCCTGCAACCGCGGGGGTCTCCAGCAGCCTCGATGCGCCTGCGACGGGATAGGCCCGT
TTTGTGCCTGTTTGAGACTTTGCAGCCATTCCGGTCGTTCGATGT
Right flanking sequence: Indices 4625 -- 5124
TGTATGAGAGGTGTATGGGGGGTGTCTTGAAGGCGTCAGGTAACGAGCCGGGGCCATCTACCACT
GTTAGAGCCACCACCTACGCCTTTAGAGCTCCATTTACCACCTTTAGAGCTACATTTACCACCTT
TAGAGCCCCATCTACCCATTTAAGCTACCATCTACCCATTTAGAGCTCCATGTGCCATCTAAGCT
ACCATCTCACCCGTCTCCCACCCTTTAAACCCACCCCACCTAGACGACAAGCTAGACGACACGGC
TAAACTGACCCGAGCCCACTCCCACCGCTCCTCCGCCATCTTCGCTTGCGTTTCCACCGCCATTT
CCGATGGACATTCTTTCCTGAGACACCCTGGCGACATATTGCCTAAACCGGGAGAAATAGCTTAC
GGGAGGGGATCGGTCGCAGCCCGCGGGCATTGTGTGGCCTGGATTAACCCTGTCGCTAATGCTGG
CGAAGCTTTCTTCCGAGCCAGTGCAGGTGTCAACCCTTTGCGAGG
Found at i:4610 original size:10 final size:10
Alignment explanation
Indices: 4575--4626 Score: 61
Period size: 10 Copynumber: 5.0 Consensus size: 10
4565 CGATGTGGGT
4575 GTGGGAGGGTG
1 GTGGGA-GGTG
4586 GT-GGAGGGTG
1 GTGGGA-GGTG
4596 GTGGGAGGTG
1 GTGGGAGGTG
4606 GTGGGAGGTG
1 GTGGGAGGTG
*
4616 TTTGGGAGGTG
1 -GTGGGAGGTG
4627 TATGAGAGGT
Statistics
Matches: 38, Mismatches: 1, Indels: 4
0.88 0.02 0.09
Matches are distributed among these distances:
10 24 0.63
11 14 0.37
ACGTcount: A:0.10, C:0.00, G:0.67, T:0.23
Consensus pattern (10 bp):
GTGGGAGGTG
Left flanking sequence: Indices 4075 -- 4574
TCCACCACCGCTGCGCCCGTAAATGCGCTCCAGCGATCCTCTGGTCATCGTAATGCATGGCGTGT
TCATTGGCAAAGCAACAATAGCCGTCGGACGGCAATTAGCCCGGTTAGGTGTCGCGGGCCTCGTA
ACGGGAAAAACCGTGGCCACCACTAGCCCCATGTGATGACCACCACGTAAACGCTGGCGTCTGCC
CAGCACCGTTTGCACCGGGTTTCGTGGCTGCTGTCGGTGTGGATTGCGAGGCGGTGACGATGCAT
ACAGAAAAGGTTAATCGAGGCTCGAGCCACGGTGCTTGTGCATGATGGGCCCTGGTAGTGGGCCC
ACTACGGCAGCAGGGCAGCCCAGGCACCCGGGTGTTGCCAGAAAACGAGTCTAATTTCCGCAGGA
CCCGCCTGCAACCGCGGGGGTCTCCAGCAGCCTCGATGCGCCTGCGACGGGATAGGCCCGTTTTG
TGCCTGTTTGAGACTTTGCAGCCATTCCGGTCGTTCGATGTGGGT
Right flanking sequence: Indices 4627 -- 5126
TATGAGAGGTGTATGGGGGGTGTCTTGAAGGCGTCAGGTAACGAGCCGGGGCCATCTACCACTGT
TAGAGCCACCACCTACGCCTTTAGAGCTCCATTTACCACCTTTAGAGCTACATTTACCACCTTTA
GAGCCCCATCTACCCATTTAAGCTACCATCTACCCATTTAGAGCTCCATGTGCCATCTAAGCTAC
CATCTCACCCGTCTCCCACCCTTTAAACCCACCCCACCTAGACGACAAGCTAGACGACACGGCTA
AACTGACCCGAGCCCACTCCCACCGCTCCTCCGCCATCTTCGCTTGCGTTTCCACCGCCATTTCC
GATGGACATTCTTTCCTGAGACACCCTGGCGACATATTGCCTAAACCGGGAGAAATAGCTTACGG
GAGGGGATCGGTCGCAGCCCGCGGGCATTGTGTGGCCTGGATTAACCCTGTCGCTAATGCTGGCG
AAGCTTTCTTCCGAGCCAGTGCAGGTGTCAACCCTTTGCGAGGGG
Found at i:4621 original size:11 final size:11
Alignment explanation
Indices: 4597--4649 Score: 63
Period size: 11 Copynumber: 4.9 Consensus size: 11
4587 TGGAGGGTGG
*
4597 TGGGAGGTG-G
1 TGGGAGGTGTA
*
4607 TGGGAGGTGTT
1 TGGGAGGTGTA
4618 TGGGAGGTGTA
1 TGGGAGGTGTA
*
4629 TGAGAGGTGTA
1 TGGGAGGTGTA
*
4640 TGGGGGGTGT
1 TGGGAGGTGT
4650 CTTGAAGGCG
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
10 9 0.24
11 28 0.76
ACGTcount: A:0.13, C:0.00, G:0.58, T:0.28
Consensus pattern (11 bp):
TGGGAGGTGTA
Left flanking sequence: Indices 4097 -- 4596
ATGCGCTCCAGCGATCCTCTGGTCATCGTAATGCATGGCGTGTTCATTGGCAAAGCAACAATAGC
CGTCGGACGGCAATTAGCCCGGTTAGGTGTCGCGGGCCTCGTAACGGGAAAAACCGTGGCCACCA
CTAGCCCCATGTGATGACCACCACGTAAACGCTGGCGTCTGCCCAGCACCGTTTGCACCGGGTTT
CGTGGCTGCTGTCGGTGTGGATTGCGAGGCGGTGACGATGCATACAGAAAAGGTTAATCGAGGCT
CGAGCCACGGTGCTTGTGCATGATGGGCCCTGGTAGTGGGCCCACTACGGCAGCAGGGCAGCCCA
GGCACCCGGGTGTTGCCAGAAAACGAGTCTAATTTCCGCAGGACCCGCCTGCAACCGCGGGGGTC
TCCAGCAGCCTCGATGCGCCTGCGACGGGATAGGCCCGTTTTGTGCCTGTTTGAGACTTTGCAGC
CATTCCGGTCGTTCGATGTGGGTGTGGGAGGGTGGTGGAGGGTGG
Right flanking sequence: Indices 4650 -- 5149
CTTGAAGGCGTCAGGTAACGAGCCGGGGCCATCTACCACTGTTAGAGCCACCACCTACGCCTTTA
GAGCTCCATTTACCACCTTTAGAGCTACATTTACCACCTTTAGAGCCCCATCTACCCATTTAAGC
TACCATCTACCCATTTAGAGCTCCATGTGCCATCTAAGCTACCATCTCACCCGTCTCCCACCCTT
TAAACCCACCCCACCTAGACGACAAGCTAGACGACACGGCTAAACTGACCCGAGCCCACTCCCAC
CGCTCCTCCGCCATCTTCGCTTGCGTTTCCACCGCCATTTCCGATGGACATTCTTTCCTGAGACA
CCCTGGCGACATATTGCCTAAACCGGGAGAAATAGCTTACGGGAGGGGATCGGTCGCAGCCCGCG
GGCATTGTGTGGCCTGGATTAACCCTGTCGCTAATGCTGGCGAAGCTTTCTTCCGAGCCAGTGCA
GGTGTCAACCCTTTGCGAGGGGTTTGGGACCGGGTTGGCGACTGG
Found at i:4626 original size:21 final size:20
Alignment explanation
Indices: 4571--4609 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
4561 CGTTCGATGT
4571 GGGT-GTGGGAGGGTGGTGGA
1 GGGTGGTGGGA-GGTGGTGGA
4591 GGGTGGTGGGAGGTGGTGG
1 GGGTGGTGGGAGGTGGTGG
4610 GAGGTGTTTG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 12 0.67
21 6 0.33
ACGTcount: A:0.08, C:0.00, G:0.72, T:0.21
Consensus pattern (20 bp):
GGGTGGTGGGAGGTGGTGGA
Left flanking sequence: Indices 4071 -- 4570
CTAATCCACCACCGCTGCGCCCGTAAATGCGCTCCAGCGATCCTCTGGTCATCGTAATGCATGGC
GTGTTCATTGGCAAAGCAACAATAGCCGTCGGACGGCAATTAGCCCGGTTAGGTGTCGCGGGCCT
CGTAACGGGAAAAACCGTGGCCACCACTAGCCCCATGTGATGACCACCACGTAAACGCTGGCGTC
TGCCCAGCACCGTTTGCACCGGGTTTCGTGGCTGCTGTCGGTGTGGATTGCGAGGCGGTGACGAT
GCATACAGAAAAGGTTAATCGAGGCTCGAGCCACGGTGCTTGTGCATGATGGGCCCTGGTAGTGG
GCCCACTACGGCAGCAGGGCAGCCCAGGCACCCGGGTGTTGCCAGAAAACGAGTCTAATTTCCGC
AGGACCCGCCTGCAACCGCGGGGGTCTCCAGCAGCCTCGATGCGCCTGCGACGGGATAGGCCCGT
TTTGTGCCTGTTTGAGACTTTGCAGCCATTCCGGTCGTTCGATGT
Right flanking sequence: Indices 4610 -- 5109
GAGGTGTTTGGGAGGTGTATGAGAGGTGTATGGGGGGTGTCTTGAAGGCGTCAGGTAACGAGCCG
GGGCCATCTACCACTGTTAGAGCCACCACCTACGCCTTTAGAGCTCCATTTACCACCTTTAGAGC
TACATTTACCACCTTTAGAGCCCCATCTACCCATTTAAGCTACCATCTACCCATTTAGAGCTCCA
TGTGCCATCTAAGCTACCATCTCACCCGTCTCCCACCCTTTAAACCCACCCCACCTAGACGACAA
GCTAGACGACACGGCTAAACTGACCCGAGCCCACTCCCACCGCTCCTCCGCCATCTTCGCTTGCG
TTTCCACCGCCATTTCCGATGGACATTCTTTCCTGAGACACCCTGGCGACATATTGCCTAAACCG
GGAGAAATAGCTTACGGGAGGGGATCGGTCGCAGCCCGCGGGCATTGTGTGGCCTGGATTAACCC
TGTCGCTAATGCTGGCGAAGCTTTCTTCCGAGCCAGTGCAGGTGT
Found at i:4733 original size:21 final size:20
Alignment explanation
Indices: 4678--4805 Score: 114
Period size: 21 Copynumber: 6.2 Consensus size: 20
4668 CGAGCCGGGG
* *
4678 CCATCTACCACTGTTAGAGCCA
1 CCATCTACCCCT-TTAGAG-CT
* *
4700 CCACCTACGCCTTTAGAGCT
1 CCATCTACCCCTTTAGAGCT
*
4720 CCATTTACCACCTTTAGAGCT
1 CCATCTACC-CCTTTAGAGCT
* * *
4741 ACATTTACCACCTTTAGAGCC
1 CCATCTACC-CCTTTAGAGCT
*
4762 CCATCTACCCATTTA-AGCT
1 CCATCTACCCCTTTAGAGCT
*
4781 ACCATCTACCCATTTAGAGCT
1 -CCATCTACCCCTTTAGAGCT
4802 CCAT
1 CCAT
4806 GTGCCATCTA
Statistics
Matches: 90, Mismatches: 13, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
19 3 0.03
20 31 0.34
21 47 0.52
22 9 0.10
ACGTcount: A:0.26, C:0.36, G:0.10, T:0.28
Consensus pattern (20 bp):
CCATCTACCCCTTTAGAGCT
Left flanking sequence: Indices 4178 -- 4677
GCCCGGTTAGGTGTCGCGGGCCTCGTAACGGGAAAAACCGTGGCCACCACTAGCCCCATGTGATG
ACCACCACGTAAACGCTGGCGTCTGCCCAGCACCGTTTGCACCGGGTTTCGTGGCTGCTGTCGGT
GTGGATTGCGAGGCGGTGACGATGCATACAGAAAAGGTTAATCGAGGCTCGAGCCACGGTGCTTG
TGCATGATGGGCCCTGGTAGTGGGCCCACTACGGCAGCAGGGCAGCCCAGGCACCCGGGTGTTGC
CAGAAAACGAGTCTAATTTCCGCAGGACCCGCCTGCAACCGCGGGGGTCTCCAGCAGCCTCGATG
CGCCTGCGACGGGATAGGCCCGTTTTGTGCCTGTTTGAGACTTTGCAGCCATTCCGGTCGTTCGA
TGTGGGTGTGGGAGGGTGGTGGAGGGTGGTGGGAGGTGGTGGGAGGTGTTTGGGAGGTGTATGAG
AGGTGTATGGGGGGTGTCTTGAAGGCGTCAGGTAACGAGCCGGGG
Right flanking sequence: Indices 4806 -- 5305
GTGCCATCTAAGCTACCATCTCACCCGTCTCCCACCCTTTAAACCCACCCCACCTAGACGACAAG
CTAGACGACACGGCTAAACTGACCCGAGCCCACTCCCACCGCTCCTCCGCCATCTTCGCTTGCGT
TTCCACCGCCATTTCCGATGGACATTCTTTCCTGAGACACCCTGGCGACATATTGCCTAAACCGG
GAGAAATAGCTTACGGGAGGGGATCGGTCGCAGCCCGCGGGCATTGTGTGGCCTGGATTAACCCT
GTCGCTAATGCTGGCGAAGCTTTCTTCCGAGCCAGTGCAGGTGTCAACCCTTTGCGAGGGGTTTG
GGACCGGGTTGGCGACTGGGTTTGCGCGTGGTTCACCCACTGGACGGTCCGGTGGCCACCGGTCG
AGGGCCCGGGTATACTAGCCTGGGCCCGACACTTACTAAAACCACTAACTCTAGACACCGAACAA
ACTAGGCCCATCAACGGTCGCCGCCAATCTAAGCGAACGGCCATG
Found at i:4755 original size:42 final size:40
Alignment explanation
Indices: 4699--4831 Score: 126
Period size: 40 Copynumber: 3.3 Consensus size: 40
4689 TGTTAGAGCC
* * * *
4699 ACCACCTACGCCTTTAGAGCTCCATTTACCACCTTTAGAGCT
1 ACCATCTACCCCTTTAGAGCTCCATCTACC-CATTTA-AGCT
* *
4741 A-CATTTACCACCTTTAGAGCCCCATCTACCCATTTAAGCT
1 ACCATCTACC-CCTTTAGAGCTCCATCTACCCATTTAAGCT
* * * *
4781 ACCATCTACCCATTTAGAGCTCCATGT-GCCATCTAAGCT
1 ACCATCTACCCCTTTAGAGCTCCATCTACCCATTTAAGCT
4820 ACCATCTCACCC
1 ACCATCT-ACCC
4832 GTCTCCCACC
Statistics
Matches: 76, Mismatches: 12, Indels: 8
0.79 0.12 0.08
Matches are distributed among these distances:
39 17 0.22
40 23 0.30
41 17 0.22
42 19 0.25
ACGTcount: A:0.26, C:0.37, G:0.10, T:0.28
Consensus pattern (40 bp):
ACCATCTACCCCTTTAGAGCTCCATCTACCCATTTAAGCT
Left flanking sequence: Indices 4199 -- 4698
CTCGTAACGGGAAAAACCGTGGCCACCACTAGCCCCATGTGATGACCACCACGTAAACGCTGGCG
TCTGCCCAGCACCGTTTGCACCGGGTTTCGTGGCTGCTGTCGGTGTGGATTGCGAGGCGGTGACG
ATGCATACAGAAAAGGTTAATCGAGGCTCGAGCCACGGTGCTTGTGCATGATGGGCCCTGGTAGT
GGGCCCACTACGGCAGCAGGGCAGCCCAGGCACCCGGGTGTTGCCAGAAAACGAGTCTAATTTCC
GCAGGACCCGCCTGCAACCGCGGGGGTCTCCAGCAGCCTCGATGCGCCTGCGACGGGATAGGCCC
GTTTTGTGCCTGTTTGAGACTTTGCAGCCATTCCGGTCGTTCGATGTGGGTGTGGGAGGGTGGTG
GAGGGTGGTGGGAGGTGGTGGGAGGTGTTTGGGAGGTGTATGAGAGGTGTATGGGGGGTGTCTTG
AAGGCGTCAGGTAACGAGCCGGGGCCATCTACCACTGTTAGAGCC
Right flanking sequence: Indices 4832 -- 5331
GTCTCCCACCCTTTAAACCCACCCCACCTAGACGACAAGCTAGACGACACGGCTAAACTGACCCG
AGCCCACTCCCACCGCTCCTCCGCCATCTTCGCTTGCGTTTCCACCGCCATTTCCGATGGACATT
CTTTCCTGAGACACCCTGGCGACATATTGCCTAAACCGGGAGAAATAGCTTACGGGAGGGGATCG
GTCGCAGCCCGCGGGCATTGTGTGGCCTGGATTAACCCTGTCGCTAATGCTGGCGAAGCTTTCTT
CCGAGCCAGTGCAGGTGTCAACCCTTTGCGAGGGGTTTGGGACCGGGTTGGCGACTGGGTTTGCG
CGTGGTTCACCCACTGGACGGTCCGGTGGCCACCGGTCGAGGGCCCGGGTATACTAGCCTGGGCC
CGACACTTACTAAAACCACTAACTCTAGACACCGAACAAACTAGGCCCATCAACGGTCGCCGCCA
ATCTAAGCGAACGGCCATGGGGCTCGCGGGGGCGCGAATCCGGGT
Found at i:4824 original size:19 final size:20
Alignment explanation
Indices: 4762--4831 Score: 81
Period size: 20 Copynumber: 3.5 Consensus size: 20
4752 CTTTAGAGCC
4762 CCATCTACCCATTTAAGCTA
1 CCATCTACCCATTTAAGCTA
4782 CCATCTACCCATTTAGAGCT-
1 CCATCTACCCATTTA-AGCTA
* * *
4802 CCATGT-GCCATCTAAGCTA
1 CCATCTACCCATTTAAGCTA
4821 CCATCTCACCC
1 CCATCT-ACCC
4832 GTCTCCCACC
Statistics
Matches: 41, Mismatches: 5, Indels: 7
0.77 0.09 0.13
Matches are distributed among these distances:
18 4 0.10
19 11 0.27
20 20 0.49
21 6 0.15
ACGTcount: A:0.26, C:0.39, G:0.09, T:0.27
Consensus pattern (20 bp):
CCATCTACCCATTTAAGCTA
Left flanking sequence: Indices 4262 -- 4761
CGTCTGCCCAGCACCGTTTGCACCGGGTTTCGTGGCTGCTGTCGGTGTGGATTGCGAGGCGGTGA
CGATGCATACAGAAAAGGTTAATCGAGGCTCGAGCCACGGTGCTTGTGCATGATGGGCCCTGGTA
GTGGGCCCACTACGGCAGCAGGGCAGCCCAGGCACCCGGGTGTTGCCAGAAAACGAGTCTAATTT
CCGCAGGACCCGCCTGCAACCGCGGGGGTCTCCAGCAGCCTCGATGCGCCTGCGACGGGATAGGC
CCGTTTTGTGCCTGTTTGAGACTTTGCAGCCATTCCGGTCGTTCGATGTGGGTGTGGGAGGGTGG
TGGAGGGTGGTGGGAGGTGGTGGGAGGTGTTTGGGAGGTGTATGAGAGGTGTATGGGGGGTGTCT
TGAAGGCGTCAGGTAACGAGCCGGGGCCATCTACCACTGTTAGAGCCACCACCTACGCCTTTAGA
GCTCCATTTACCACCTTTAGAGCTACATTTACCACCTTTAGAGCC
Right flanking sequence: Indices 4832 -- 5331
GTCTCCCACCCTTTAAACCCACCCCACCTAGACGACAAGCTAGACGACACGGCTAAACTGACCCG
AGCCCACTCCCACCGCTCCTCCGCCATCTTCGCTTGCGTTTCCACCGCCATTTCCGATGGACATT
CTTTCCTGAGACACCCTGGCGACATATTGCCTAAACCGGGAGAAATAGCTTACGGGAGGGGATCG
GTCGCAGCCCGCGGGCATTGTGTGGCCTGGATTAACCCTGTCGCTAATGCTGGCGAAGCTTTCTT
CCGAGCCAGTGCAGGTGTCAACCCTTTGCGAGGGGTTTGGGACCGGGTTGGCGACTGGGTTTGCG
CGTGGTTCACCCACTGGACGGTCCGGTGGCCACCGGTCGAGGGCCCGGGTATACTAGCCTGGGCC
CGACACTTACTAAAACCACTAACTCTAGACACCGAACAAACTAGGCCCATCAACGGTCGCCGCCA
ATCTAAGCGAACGGCCATGGGGCTCGCGGGGGCGCGAATCCGGGT
Found at i:6558 original size:6 final size:6
Alignment explanation
Indices: 6549--6584 Score: 54
Period size: 6 Copynumber: 6.0 Consensus size: 6
6539 CCTCGCCGCC
* *
6549 GCCCCG GCCCCG GCCCCA GCCCCA GCCCCG GCCCCG
1 GCCCCG GCCCCG GCCCCG GCCCCG GCCCCG GCCCCG
6585 CTCGCGGGCA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.06, C:0.67, G:0.28, T:0.00
Consensus pattern (6 bp):
GCCCCG
Left flanking sequence: Indices 6049 -- 6548
ACACCGTTCGTGGGCCTCCTCCTCGCTGCGCCCACCCCTCGCCCCCATTGCCGGAGCCGTCTGCG
CTCTCGCCCCTCCTCCCCCCCTCAGCTCGCCCCAGGCCCCGCGCCTCCGCTCGCCTTCTCCCCTC
CGCCGCCGGCTCGTGCCCCTCCCTGCCCACCATTTTGTCCACCGTGTTGTTGACCCACCCGGCCC
CTGGAATCTATGGCATGTCGAAGTCTTCCAGCAGCTCGAGCTCTCCTAAACAAGATAAGGTTTCG
ATAAACAGCATTTTGAACGCCGGGGCACTGCACCGGGTGCCCCCGATGACAACCACGGTGCCGTC
GCTCGCGGCGATGCCGGGGCTCCCCACCCAGACCAGCCCCTCCGTCGCCCCCACCGGTGCCCCCA
CCGCCGCCAGTGCTCCTGGCGCGCCCGCTACCACCGGCGCCCCGAGTGCGTCCTCGCACCTCCCC
ACGCTACCTCCCCTCAACCTCTCGCCGCTGGGCGCCCTCGCCGCC
Right flanking sequence: Indices 6585 -- 7084
CTCGCGGGCACGCCCCCGACCCGCGGGTCGCCGTCGCAGGCGGCGCTCCCCGTGATGGGGCAGCC
GATGATGGCGCCCCCGGCGCCGGTGCTCTACTACCCGTACCCGCCGCCGCAGTACCCGTACCACC
CCATGGGCCACCCCGCCCCCGAGCCCGACTACGGCGCCGCCGAGGCCCGGCGCGGGCGCCGGTAC
CGCCGCCGGTACCTGGAGATCGTCCGGCTCTACCTGTGTCTGTTCCCCGGTTGCGACAAGAGCTA
CGGGCTGTTGAACCACTTGAACACCCACATAGTCACCAAGAAGCACGGCCACCGCAAGCTGAAGG
CCGACTTCCACCACAAGGACGACCGCCCCGTGGTGCCCCCGCACATGGCGCCGCCGCCCCCCGAC
TACACCCAGGGCAACTACTGGTACGGGCCGCGGCCCCCGCCGCTGGGGTACCCCCAGGAGCACCC
GGTGGTGGTGGCTGCCGGTCAGCCGCCGCCGCCGCCGGGGTACGG
Found at i:6570 original size:18 final size:18
Alignment explanation
Indices: 6549--6583 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
6539 CCTCGCCGCC
*
6549 GCCCCGGCCCCGGCCCCA
1 GCCCCAGCCCCGGCCCCA
6567 GCCCCAGCCCCGGCCCC
1 GCCCCAGCCCCGGCCCC
6584 GCTCGCGGGC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.06, C:0.69, G:0.26, T:0.00
Consensus pattern (18 bp):
GCCCCAGCCCCGGCCCCA
Left flanking sequence: Indices 6049 -- 6548
ACACCGTTCGTGGGCCTCCTCCTCGCTGCGCCCACCCCTCGCCCCCATTGCCGGAGCCGTCTGCG
CTCTCGCCCCTCCTCCCCCCCTCAGCTCGCCCCAGGCCCCGCGCCTCCGCTCGCCTTCTCCCCTC
CGCCGCCGGCTCGTGCCCCTCCCTGCCCACCATTTTGTCCACCGTGTTGTTGACCCACCCGGCCC
CTGGAATCTATGGCATGTCGAAGTCTTCCAGCAGCTCGAGCTCTCCTAAACAAGATAAGGTTTCG
ATAAACAGCATTTTGAACGCCGGGGCACTGCACCGGGTGCCCCCGATGACAACCACGGTGCCGTC
GCTCGCGGCGATGCCGGGGCTCCCCACCCAGACCAGCCCCTCCGTCGCCCCCACCGGTGCCCCCA
CCGCCGCCAGTGCTCCTGGCGCGCCCGCTACCACCGGCGCCCCGAGTGCGTCCTCGCACCTCCCC
ACGCTACCTCCCCTCAACCTCTCGCCGCTGGGCGCCCTCGCCGCC
Right flanking sequence: Indices 6584 -- 7083
GCTCGCGGGCACGCCCCCGACCCGCGGGTCGCCGTCGCAGGCGGCGCTCCCCGTGATGGGGCAGC
CGATGATGGCGCCCCCGGCGCCGGTGCTCTACTACCCGTACCCGCCGCCGCAGTACCCGTACCAC
CCCATGGGCCACCCCGCCCCCGAGCCCGACTACGGCGCCGCCGAGGCCCGGCGCGGGCGCCGGTA
CCGCCGCCGGTACCTGGAGATCGTCCGGCTCTACCTGTGTCTGTTCCCCGGTTGCGACAAGAGCT
ACGGGCTGTTGAACCACTTGAACACCCACATAGTCACCAAGAAGCACGGCCACCGCAAGCTGAAG
GCCGACTTCCACCACAAGGACGACCGCCCCGTGGTGCCCCCGCACATGGCGCCGCCGCCCCCCGA
CTACACCCAGGGCAACTACTGGTACGGGCCGCGGCCCCCGCCGCTGGGGTACCCCCAGGAGCACC
CGGTGGTGGTGGCTGCCGGTCAGCCGCCGCCGCCGCCGGGGTACG
Found at i:7504 original size:11 final size:11
Alignment explanation
Indices: 7490--7517 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
7480 GGAGGAATTG
7490 AGGAGGTTTTT
1 AGGAGGTTTTT
7501 AGGAGGTTTTT
1 AGGAGGTTTTT
7512 AGGAGG
1 AGGAGG
7518 ATGTTGAGGG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.21, C:0.00, G:0.43, T:0.36
Consensus pattern (11 bp):
AGGAGGTTTTT
Left flanking sequence: Indices 6990 -- 7489
TACTGGTACGGGCCGCGGCCCCCGCCGCTGGGGTACCCCCAGGAGCACCCGGTGGTGGTGGCTGC
CGGTCAGCCGCCGCCGCCGCCGGGGTACGGGTACCCGCCGTTTGCCCCGCCCCCGCCCCCGGGGG
TGTACGCGCGCCCGGTGTACCTGCACCACCCGCCGCCGCCCCCCGGGGACGACGACGTCAAGACG
AGTCCGTAGACTACACGGGCGAGCGGTCCTCCAGACTGCTCCGCTGGCTACTTGACCAGACGGTG
GCCAGTGTGGCCGCCGGTGTCTGACGTAGCAGGTTCGCCTGATAGCATCCCCACGACATAGAGCT
GTAATATTAATCATTAGACGGGGTTTTGTATGCGGTAATGAACAATAGAAGAAGAATGAGTAGGT
GGTAGGTGGTTTAAAGGGATTTAAACGGGTTCTTTTTGATAGGAAAATGGTCTGGAGAGGCTGTT
CGTGGAGAGGTGGGGGCTTACGGAGGGGGTATTGAGGAGGAATTG
Right flanking sequence: Indices 7518 -- 8017
ATGTTGAGGGAACGGATTTATTAAGGGTAGTGGTTTATTGAAGATGTTGATTTATTGAGGGAAGT
GCTTTATGGAGGGAGGTGCTGTATTGAGGGAGAATTATTGGAACAGATGAGGTCTTGTCCACGAG
AGATTAATCAATTGGTGAATAGATCAATTGAGATTATTAAACACCTTCACTTGCTACCACCCATT
GGGTCAATTTATGCGATTTATTTATCCATTCATTTTTCGTTTTATACGTTCTATTTGCTTTATTT
TACAGCACAATAATCCACTCTTCTCACTTCTTCTCTTCATGGACTACCCCAGAGTCTTCACATCT
CGGGATACCCCGCAAAAGCCACCGTGAGGCGGTGGAGACACAGAGGCTGGATAACTCCGTGGCGA
TGAGGTTTTGAATGCAATTGGTGGAGAAGTGTAGTTCTATGGTTAAAGGAGAAAAATACCACCAC
TCTTGCACTAAACGTCACCAAAACTCTTTCAAAATTGACCATTCA
Found at i:7588 original size:17 final size:17
Alignment explanation
Indices: 7568--7613 Score: 65
Period size: 17 Copynumber: 2.7 Consensus size: 17
7558 AAGATGTTGA
7568 TTTATTGAGGGAAGTGC
1 TTTATTGAGGGAAGTGC
* *
7585 TTTATGGAGGGAGGTGC
1 TTTATTGAGGGAAGTGC
*
7602 TGTATTGAGGGA
1 TTTATTGAGGGA
7614 GAATTATTGG
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
17 25 1.00
ACGTcount: A:0.22, C:0.04, G:0.41, T:0.33
Consensus pattern (17 bp):
TTTATTGAGGGAAGTGC
Left flanking sequence: Indices 7068 -- 7567
CCGCCGCCGGGGTACGGGTACCCGCCGTTTGCCCCGCCCCCGCCCCCGGGGGTGTACGCGCGCCC
GGTGTACCTGCACCACCCGCCGCCGCCCCCCGGGGACGACGACGTCAAGACGAGTCCGTAGACTA
CACGGGCGAGCGGTCCTCCAGACTGCTCCGCTGGCTACTTGACCAGACGGTGGCCAGTGTGGCCG
CCGGTGTCTGACGTAGCAGGTTCGCCTGATAGCATCCCCACGACATAGAGCTGTAATATTAATCA
TTAGACGGGGTTTTGTATGCGGTAATGAACAATAGAAGAAGAATGAGTAGGTGGTAGGTGGTTTA
AAGGGATTTAAACGGGTTCTTTTTGATAGGAAAATGGTCTGGAGAGGCTGTTCGTGGAGAGGTGG
GGGCTTACGGAGGGGGTATTGAGGAGGAATTGAGGAGGTTTTTAGGAGGTTTTTAGGAGGATGTT
GAGGGAACGGATTTATTAAGGGTAGTGGTTTATTGAAGATGTTGA
Right flanking sequence: Indices 7614 -- 8113
GAATTATTGGAACAGATGAGGTCTTGTCCACGAGAGATTAATCAATTGGTGAATAGATCAATTGA
GATTATTAAACACCTTCACTTGCTACCACCCATTGGGTCAATTTATGCGATTTATTTATCCATTC
ATTTTTCGTTTTATACGTTCTATTTGCTTTATTTTACAGCACAATAATCCACTCTTCTCACTTCT
TCTCTTCATGGACTACCCCAGAGTCTTCACATCTCGGGATACCCCGCAAAAGCCACCGTGAGGCG
GTGGAGACACAGAGGCTGGATAACTCCGTGGCGATGAGGTTTTGAATGCAATTGGTGGAGAAGTG
TAGTTCTATGGTTAAAGGAGAAAAATACCACCACTCTTGCACTAAACGTCACCAAAACTCTTTCA
AAATTGACCATTCAAATCCCTAAAAACTACCTTTATAAATTACCCTCTATATCACCCATTAATTC
CTTCGAATCCATTGACCCAGTTATTTCGCCTTCACCACCCATTCT
Found at i:9592 original size:18 final size:18
Alignment explanation
Indices: 9571--9605 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
9561 GCTTTCTTTC
9571 TTACCTTCCCCTTCTTCT
1 TTACCTTCCCCTTCTTCT
*
9589 TTACCTTCCTCTTCTTC
1 TTACCTTCCCCTTCTTC
9606 CTTCCCCTGC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.06, C:0.43, G:0.00, T:0.51
Consensus pattern (18 bp):
TTACCTTCCCCTTCTTCT
Left flanking sequence: Indices 9071 -- 9570
CCACACCGCGGCATCTCCTGAAGGCTAGGGTCCTTCGATCCGCATTGGTGCCAAGACTGGCTGGT
AACCTGCTTAGAAGGGTCTAATCGGGGCTAAACTCAGACACCACTGTCGTGAACACCTACGCGGT
TCTAGCCCGCGAATAAACTATGGTTGCATTGGAAACGGTTTTGTGGCCGACAGTCTCCGACAGGA
ACAATTGGCAGGTTCGTGCGGTCGCAGAGTGTGTCTCGGAGCTATTGTTGGCGTTTAGGTTGGGT
ATGGGCGAGTTCCACGGCTGAACAAGGAAACGGCGAAATAGGGTTCGATGGAGCTAGGCACAAGC
TGGCAACCGTTTACGAGGTAGGGGTGTGCTTAGGGTTGCATTGGATGGTACAAAGATGAGAGAGG
AAAGAAGCTAGGGGAGGAAGGAATCAGGAAAGAGTAAGAAGATTAAAGATAAAGGGCGAGGAAGC
CCACACGATGAGAACCGTGTGTGACCACAAGCTTTGCTTTCTTTC
Right flanking sequence: Indices 9606 -- 10105
CTTCCCCTGCTTCTTTCCCCTGCTTCCTTCTTCCCTCGCTTCCTTACTTCTCTTTCCTTCGTCTG
CTGCTTCCTTGCGTAAGCGACCGTTGGAAGGACCCTTTACGCAGGGAGCCCAAGCCTTTTCGCGA
TTATCATTACCCTCGTCCGGTTTTCAGGGTGACCACGCCAACAATGGCAGACCGACATCGACAAT
GCCATTATACCCCCCTGACCTGGTGTCAGATATGTTTGAGGCGCCGTTGATCCCCCTGAGGGTGA
TGCTGTGACGTTGCATTATTTTTAACCGGTGGGAACAGCACCGAAACCGCCACAAAGACACAAAC
GGAAGGCGAGCACGACGAGGCAGCGACAGGGAGCAAAGAACAAACCCCGGGGTTTGGCGGTTTGC
GAGCATTCCCCGGCAAAAGCACCATATACGAGATTGCTATCGCTAAGCGTGACCTGAAATATTGG
GATGATGGAACGAGAAATAAGGTTGCACGGGAGAAACCAGCAGGA
Found at i:9610 original size:13 final size:13
Alignment explanation
Indices: 9592--9650 Score: 64
Period size: 13 Copynumber: 4.3 Consensus size: 13
9582 TTCTTCTTTA
* *
9592 CCTTCCTCTTCTT
1 CCTTCCCCTGCTT
9605 CCTTCCCCTGCTT
1 CCTTCCCCTGCTT
*
9618 CTTTCCCCTGCTT
1 CCTTCCCCTGCTT
9631 CCTTCTTCCCTCGCTT
1 CCTTC--CCCT-GCTT
9647 CCTT
1 CCTT
9651 ACTTCTCTTT
Statistics
Matches: 39, Mismatches: 4, Indels: 3
0.85 0.09 0.07
Matches are distributed among these distances:
13 27 0.69
15 4 0.10
16 8 0.21
ACGTcount: A:0.00, C:0.49, G:0.05, T:0.46
Consensus pattern (13 bp):
CCTTCCCCTGCTT
Left flanking sequence: Indices 9092 -- 9591
AGGCTAGGGTCCTTCGATCCGCATTGGTGCCAAGACTGGCTGGTAACCTGCTTAGAAGGGTCTAA
TCGGGGCTAAACTCAGACACCACTGTCGTGAACACCTACGCGGTTCTAGCCCGCGAATAAACTAT
GGTTGCATTGGAAACGGTTTTGTGGCCGACAGTCTCCGACAGGAACAATTGGCAGGTTCGTGCGG
TCGCAGAGTGTGTCTCGGAGCTATTGTTGGCGTTTAGGTTGGGTATGGGCGAGTTCCACGGCTGA
ACAAGGAAACGGCGAAATAGGGTTCGATGGAGCTAGGCACAAGCTGGCAACCGTTTACGAGGTAG
GGGTGTGCTTAGGGTTGCATTGGATGGTACAAAGATGAGAGAGGAAAGAAGCTAGGGGAGGAAGG
AATCAGGAAAGAGTAAGAAGATTAAAGATAAAGGGCGAGGAAGCCCACACGATGAGAACCGTGTG
TGACCACAAGCTTTGCTTTCTTTCTTACCTTCCCCTTCTTCTTTA
Right flanking sequence: Indices 9651 -- 10150
ACTTCTCTTTCCTTCGTCTGCTGCTTCCTTGCGTAAGCGACCGTTGGAAGGACCCTTTACGCAGG
GAGCCCAAGCCTTTTCGCGATTATCATTACCCTCGTCCGGTTTTCAGGGTGACCACGCCAACAAT
GGCAGACCGACATCGACAATGCCATTATACCCCCCTGACCTGGTGTCAGATATGTTTGAGGCGCC
GTTGATCCCCCTGAGGGTGATGCTGTGACGTTGCATTATTTTTAACCGGTGGGAACAGCACCGAA
ACCGCCACAAAGACACAAACGGAAGGCGAGCACGACGAGGCAGCGACAGGGAGCAAAGAACAAAC
CCCGGGGTTTGGCGGTTTGCGAGCATTCCCCGGCAAAAGCACCATATACGAGATTGCTATCGCTA
AGCGTGACCTGAAATATTGGGATGATGGAACGAGAAATAAGGTTGCACGGGAGAAACCAGCAGGA
GAAGGCACCACAAGCAGGTTGGAATAATAGAAGGCAAATCAAGGG
Found at i:9646 original size:16 final size:16
Alignment explanation
Indices: 9623--9655 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
9613 TGCTTCTTTC
9623 CCCTGCTTCCTT-CTT
1 CCCTGCTTCCTTACTT
9638 CCCTCGCTTCCTTACTT
1 CCCT-GCTTCCTTACTT
9655 C
1 C
9656 TCTTTCCTTC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 4 0.25
16 8 0.50
17 4 0.25
ACGTcount: A:0.03, C:0.48, G:0.06, T:0.42
Consensus pattern (16 bp):
CCCTGCTTCCTTACTT
Left flanking sequence: Indices 9123 -- 9622
AAGACTGGCTGGTAACCTGCTTAGAAGGGTCTAATCGGGGCTAAACTCAGACACCACTGTCGTGA
ACACCTACGCGGTTCTAGCCCGCGAATAAACTATGGTTGCATTGGAAACGGTTTTGTGGCCGACA
GTCTCCGACAGGAACAATTGGCAGGTTCGTGCGGTCGCAGAGTGTGTCTCGGAGCTATTGTTGGC
GTTTAGGTTGGGTATGGGCGAGTTCCACGGCTGAACAAGGAAACGGCGAAATAGGGTTCGATGGA
GCTAGGCACAAGCTGGCAACCGTTTACGAGGTAGGGGTGTGCTTAGGGTTGCATTGGATGGTACA
AAGATGAGAGAGGAAAGAAGCTAGGGGAGGAAGGAATCAGGAAAGAGTAAGAAGATTAAAGATAA
AGGGCGAGGAAGCCCACACGATGAGAACCGTGTGTGACCACAAGCTTTGCTTTCTTTCTTACCTT
CCCCTTCTTCTTTACCTTCCTCTTCTTCCTTCCCCTGCTTCTTTC
Right flanking sequence: Indices 9656 -- 10155
TCTTTCCTTCGTCTGCTGCTTCCTTGCGTAAGCGACCGTTGGAAGGACCCTTTACGCAGGGAGCC
CAAGCCTTTTCGCGATTATCATTACCCTCGTCCGGTTTTCAGGGTGACCACGCCAACAATGGCAG
ACCGACATCGACAATGCCATTATACCCCCCTGACCTGGTGTCAGATATGTTTGAGGCGCCGTTGA
TCCCCCTGAGGGTGATGCTGTGACGTTGCATTATTTTTAACCGGTGGGAACAGCACCGAAACCGC
CACAAAGACACAAACGGAAGGCGAGCACGACGAGGCAGCGACAGGGAGCAAAGAACAAACCCCGG
GGTTTGGCGGTTTGCGAGCATTCCCCGGCAAAAGCACCATATACGAGATTGCTATCGCTAAGCGT
GACCTGAAATATTGGGATGATGGAACGAGAAATAAGGTTGCACGGGAGAAACCAGCAGGAGAAGG
CACCACAAGCAGGTTGGAATAATAGAAGGCAAATCAAGGGTCAAA
Found at i:11058 original size:15 final size:15
Alignment explanation
Indices: 11038--11080 Score: 68
Period size: 15 Copynumber: 2.9 Consensus size: 15
11028 CGAATTATTA
11038 CCGTACGCAAGCGTT
1 CCGTACGCAAGCGTT
*
11053 CCGTACGCAAACGTT
1 CCGTACGCAAGCGTT
*
11068 CAGTACGCAAGCG
1 CCGTACGCAAGCG
11081 GTGCAGGTTT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 25 1.00
ACGTcount: A:0.26, C:0.33, G:0.26, T:0.16
Consensus pattern (15 bp):
CCGTACGCAAGCGTT
Left flanking sequence: Indices 10538 -- 11037
TAATAATTGCCGAACCCCCACGTGAGCCTGCGATAGGGTATCTAGCCAAACTAAAATATGTCGGA
TGATGGGGGATATCTCGCGAAAATTCTCGCAACAACTCGTTTCGGTAAAGATACGAGGCCCGATA
GCGCTCGGCAAATAAGGTGTGGTATTGTTGGGGAACCTGTGGTAGCGGGAAAAGTGGAGAAGGCC
ACAAAGCCTGCCAACGCTCTGGAAACAACGTTGCAATGCAATCGAAGAAACCGTTGCCCGGTAGT
TACACTCGCATTTTTGTTCTCGGTTGTGGGCGTGTTTTGCTCCTGATATCGTCATTTCGCTGAGC
CACAATTCCGGAATAAACGCGGCGTACGGCGTTACCACGGTCGATCCTATGACGAAATGCCGTAG
CGTATCTGCTAGCGATTTAGGGGGATAATTTGCGCATGAACCCCTATTGTTGTCCTGATACCATA
GCCCAGTTAGTCGAGCTACATGAAGCAACGCTACACGAATTATTA
Right flanking sequence: Indices 11081 -- 11580
GTGCAGGTTTAGTCAGGAGTGTTGGAGGTTAGCAGCTGCTTCGTCATTGCATTTATGCTGGTAGA
TCTCCCATTGGCTCGGGTCTAGGCAATTCATCGCTACATTTTATCGGTAGATTTCTTTGCTACAT
TTCATCGCTCTATTTTCATCGCTACATTTCTTTGCTACATTTCATCGTCATATCATCGCTACATT
TCATCGACATTTCATCACTACACTTTAAAGAATAATTTTAAATCCCCACAAAGCCATCTCTTCAT
TGCTCCAATTGCTTTAGTTGGACTCTAAAACTCCTAACCACTCCATAAGTCATCCTTTGCCAGGG
TCTCTTCTCCAACTTCTGTCCGTTATCCTCTCAGTTACTTTCAATCACTTACAGCTACAATTACC
TTCTCAGCTATTCTCCGTTACTCTCTCCGTCTCTAGTCATCATCTTCTTCTCCACTCAGCCTCAC
AACCATTACCACCATGACTCGTGTAACATAAGCCCCCAACCGATG
Found at i:11212 original size:13 final size:13
Alignment explanation
Indices: 11172--11297 Score: 118
Period size: 13 Copynumber: 9.9 Consensus size: 13
11162 GTCTAGGCAA
11172 TTCATCGCTACAT
1 TTCATCGCTACAT
* * *
11185 TTTATCGGTAGAT
1 TTCATCGCTACAT
* *
11198 TTCTTTGCTACAT
1 TTCATCGCTACAT
11211 TTCATCGCT-CTATT
1 TTCATCGCTAC-A-T
11225 TTCATCGCTACAT
1 TTCATCGCTACAT
* *
11238 TTCTTTGCTACAT
1 TTCATCGCTACAT
11251 TTCATCG-T-CAT
1 TTCATCGCTACAT
*
11262 ATCATCGCTACAT
1 TTCATCGCTACAT
11275 TTCATCG--ACAT
1 TTCATCGCTACAT
*
11286 TTCATCACTACA
1 TTCATCGCTACA
11298 CTTTAAAGAA
Statistics
Matches: 89, Mismatches: 17, Indels: 14
0.74 0.14 0.12
Matches are distributed among these distances:
11 19 0.21
12 3 0.03
13 55 0.62
14 11 0.12
15 1 0.01
ACGTcount: A:0.22, C:0.26, G:0.09, T:0.43
Consensus pattern (13 bp):
TTCATCGCTACAT
Left flanking sequence: Indices 10672 -- 11171
TCGGCAAATAAGGTGTGGTATTGTTGGGGAACCTGTGGTAGCGGGAAAAGTGGAGAAGGCCACAA
AGCCTGCCAACGCTCTGGAAACAACGTTGCAATGCAATCGAAGAAACCGTTGCCCGGTAGTTACA
CTCGCATTTTTGTTCTCGGTTGTGGGCGTGTTTTGCTCCTGATATCGTCATTTCGCTGAGCCACA
ATTCCGGAATAAACGCGGCGTACGGCGTTACCACGGTCGATCCTATGACGAAATGCCGTAGCGTA
TCTGCTAGCGATTTAGGGGGATAATTTGCGCATGAACCCCTATTGTTGTCCTGATACCATAGCCC
AGTTAGTCGAGCTACATGAAGCAACGCTACACGAATTATTACCGTACGCAAGCGTTCCGTACGCA
AACGTTCAGTACGCAAGCGGTGCAGGTTTAGTCAGGAGTGTTGGAGGTTAGCAGCTGCTTCGTCA
TTGCATTTATGCTGGTAGATCTCCCATTGGCTCGGGTCTAGGCAA
Right flanking sequence: Indices 11298 -- 11797
CTTTAAAGAATAATTTTAAATCCCCACAAAGCCATCTCTTCATTGCTCCAATTGCTTTAGTTGGA
CTCTAAAACTCCTAACCACTCCATAAGTCATCCTTTGCCAGGGTCTCTTCTCCAACTTCTGTCCG
TTATCCTCTCAGTTACTTTCAATCACTTACAGCTACAATTACCTTCTCAGCTATTCTCCGTTACT
CTCTCCGTCTCTAGTCATCATCTTCTTCTCCACTCAGCCTCACAACCATTACCACCATGACTCGT
GTAACATAAGCCCCCAACCGATGATCCCCGTGACTCCCCACCGTCCGGAATCCCACCCGGGCGGG
CCTCTACGTCCTGCTCGCTTCGTATCCAACTCTATTTCTAGAGAATGTCCTGCAAGTTTCACCGG
TGACAAAGGCCGAGACCTCATCACAGGACACGCTCGACCAGGAATCACAAGACACGCACAACACA
CGCAAGCCACGCTCCAGGGCGTCACGGGACACGCTCCAACATCCG
Found at i:11225 original size:26 final size:27
Alignment explanation
Indices: 11172--11291 Score: 92
Period size: 24 Copynumber: 4.7 Consensus size: 27
11162 GTCTAGGCAA
* *
11172 TTCATCGCTACATTTTATCGGTAGA-T
1 TTCATCGCTACATTTCATCGCTAGATT
* * **
11198 TTCTTTGCTACATTTCATCGCTCTATT
1 TTCATCGCTACATTTCATCGCTAGATT
* * *
11225 TTCATCGCTACATTTCTTTGCTACA-T
1 TTCATCGCTACATTTCATCGCTAGATT
* *
11251 TTCATCG-T-CATATCATCGCTACA-T
1 TTCATCGCTACATTTCATCGCTAGATT
11275 TTCATCG--ACATTTCATC
1 TTCATCGCTACATTTCATC
11292 ACTACACTTT
Statistics
Matches: 76, Mismatches: 16, Indels: 6
0.78 0.16 0.06
Matches are distributed among these distances:
24 28 0.37
25 1 0.01
26 27 0.36
27 20 0.26
ACGTcount: A:0.21, C:0.26, G:0.09, T:0.44
Consensus pattern (27 bp):
TTCATCGCTACATTTCATCGCTAGATT
Left flanking sequence: Indices 10672 -- 11171
TCGGCAAATAAGGTGTGGTATTGTTGGGGAACCTGTGGTAGCGGGAAAAGTGGAGAAGGCCACAA
AGCCTGCCAACGCTCTGGAAACAACGTTGCAATGCAATCGAAGAAACCGTTGCCCGGTAGTTACA
CTCGCATTTTTGTTCTCGGTTGTGGGCGTGTTTTGCTCCTGATATCGTCATTTCGCTGAGCCACA
ATTCCGGAATAAACGCGGCGTACGGCGTTACCACGGTCGATCCTATGACGAAATGCCGTAGCGTA
TCTGCTAGCGATTTAGGGGGATAATTTGCGCATGAACCCCTATTGTTGTCCTGATACCATAGCCC
AGTTAGTCGAGCTACATGAAGCAACGCTACACGAATTATTACCGTACGCAAGCGTTCCGTACGCA
AACGTTCAGTACGCAAGCGGTGCAGGTTTAGTCAGGAGTGTTGGAGGTTAGCAGCTGCTTCGTCA
TTGCATTTATGCTGGTAGATCTCCCATTGGCTCGGGTCTAGGCAA
Right flanking sequence: Indices 11292 -- 11791
ACTACACTTTAAAGAATAATTTTAAATCCCCACAAAGCCATCTCTTCATTGCTCCAATTGCTTTA
GTTGGACTCTAAAACTCCTAACCACTCCATAAGTCATCCTTTGCCAGGGTCTCTTCTCCAACTTC
TGTCCGTTATCCTCTCAGTTACTTTCAATCACTTACAGCTACAATTACCTTCTCAGCTATTCTCC
GTTACTCTCTCCGTCTCTAGTCATCATCTTCTTCTCCACTCAGCCTCACAACCATTACCACCATG
ACTCGTGTAACATAAGCCCCCAACCGATGATCCCCGTGACTCCCCACCGTCCGGAATCCCACCCG
GGCGGGCCTCTACGTCCTGCTCGCTTCGTATCCAACTCTATTTCTAGAGAATGTCCTGCAAGTTT
CACCGGTGACAAAGGCCGAGACCTCATCACAGGACACGCTCGACCAGGAATCACAAGACACGCAC
AACACACGCAAGCCACGCTCCAGGGCGTCACGGGACACGCTCCAA
Found at i:11249 original size:40 final size:39
Alignment explanation
Indices: 11172--11277 Score: 146
Period size: 40 Copynumber: 2.7 Consensus size: 39
11162 GTCTAGGCAA
* *
11172 TTCATCGCTACATTTT-ATCGGTAGATTTCTTTGCTACAT
1 TTCATCGCT-CATTTTCATCGCTACATTTCTTTGCTACAT
11211 TTCATCGCTCTATTTTCATCGCTACATTTCTTTGCTACAT
1 TTCATCGCTC-ATTTTCATCGCTACATTTCTTTGCTACAT
*
11251 TTCATCG-TCA-TATCATCGCTACATTTC
1 TTCATCGCTCATTTTCATCGCTACATTTC
11278 ATCGACATTT
Statistics
Matches: 62, Mismatches: 3, Indels: 6
0.87 0.04 0.08
Matches are distributed among these distances:
37 16 0.26
38 2 0.03
39 16 0.26
40 28 0.45
ACGTcount: A:0.20, C:0.25, G:0.09, T:0.45
Consensus pattern (39 bp):
TTCATCGCTCATTTTCATCGCTACATTTCTTTGCTACAT
Left flanking sequence: Indices 10672 -- 11171
TCGGCAAATAAGGTGTGGTATTGTTGGGGAACCTGTGGTAGCGGGAAAAGTGGAGAAGGCCACAA
AGCCTGCCAACGCTCTGGAAACAACGTTGCAATGCAATCGAAGAAACCGTTGCCCGGTAGTTACA
CTCGCATTTTTGTTCTCGGTTGTGGGCGTGTTTTGCTCCTGATATCGTCATTTCGCTGAGCCACA
ATTCCGGAATAAACGCGGCGTACGGCGTTACCACGGTCGATCCTATGACGAAATGCCGTAGCGTA
TCTGCTAGCGATTTAGGGGGATAATTTGCGCATGAACCCCTATTGTTGTCCTGATACCATAGCCC
AGTTAGTCGAGCTACATGAAGCAACGCTACACGAATTATTACCGTACGCAAGCGTTCCGTACGCA
AACGTTCAGTACGCAAGCGGTGCAGGTTTAGTCAGGAGTGTTGGAGGTTAGCAGCTGCTTCGTCA
TTGCATTTATGCTGGTAGATCTCCCATTGGCTCGGGTCTAGGCAA
Right flanking sequence: Indices 11278 -- 11777
ATCGACATTTCATCACTACACTTTAAAGAATAATTTTAAATCCCCACAAAGCCATCTCTTCATTG
CTCCAATTGCTTTAGTTGGACTCTAAAACTCCTAACCACTCCATAAGTCATCCTTTGCCAGGGTC
TCTTCTCCAACTTCTGTCCGTTATCCTCTCAGTTACTTTCAATCACTTACAGCTACAATTACCTT
CTCAGCTATTCTCCGTTACTCTCTCCGTCTCTAGTCATCATCTTCTTCTCCACTCAGCCTCACAA
CCATTACCACCATGACTCGTGTAACATAAGCCCCCAACCGATGATCCCCGTGACTCCCCACCGTC
CGGAATCCCACCCGGGCGGGCCTCTACGTCCTGCTCGCTTCGTATCCAACTCTATTTCTAGAGAA
TGTCCTGCAAGTTTCACCGGTGACAAAGGCCGAGACCTCATCACAGGACACGCTCGACCAGGAAT
CACAAGACACGCACAACACACGCAAGCCACGCTCCAGGGCGTCAC
Found at i:11268 original size:11 final size:11
Alignment explanation
Indices: 11248--11291 Score: 52
Period size: 11 Copynumber: 3.8 Consensus size: 11
11238 TTCTTTGCTA
11248 CATTTCATCGT
1 CATTTCATCGT
*
11259 CATATCATCGCT
1 CATTTCATCG-T
*
11271 ACATTTCATCGA
1 -CATTTCATCGT
11283 CATTTCATC
1 CATTTCATC
11292 ACTACACTTT
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
11 18 0.64
12 1 0.04
13 9 0.32
ACGTcount: A:0.25, C:0.30, G:0.07, T:0.39
Consensus pattern (11 bp):
CATTTCATCGT
Left flanking sequence: Indices 10748 -- 11247
GCTCTGGAAACAACGTTGCAATGCAATCGAAGAAACCGTTGCCCGGTAGTTACACTCGCATTTTT
GTTCTCGGTTGTGGGCGTGTTTTGCTCCTGATATCGTCATTTCGCTGAGCCACAATTCCGGAATA
AACGCGGCGTACGGCGTTACCACGGTCGATCCTATGACGAAATGCCGTAGCGTATCTGCTAGCGA
TTTAGGGGGATAATTTGCGCATGAACCCCTATTGTTGTCCTGATACCATAGCCCAGTTAGTCGAG
CTACATGAAGCAACGCTACACGAATTATTACCGTACGCAAGCGTTCCGTACGCAAACGTTCAGTA
CGCAAGCGGTGCAGGTTTAGTCAGGAGTGTTGGAGGTTAGCAGCTGCTTCGTCATTGCATTTATG
CTGGTAGATCTCCCATTGGCTCGGGTCTAGGCAATTCATCGCTACATTTTATCGGTAGATTTCTT
TGCTACATTTCATCGCTCTATTTTCATCGCTACATTTCTTTGCTA
Right flanking sequence: Indices 11292 -- 11791
ACTACACTTTAAAGAATAATTTTAAATCCCCACAAAGCCATCTCTTCATTGCTCCAATTGCTTTA
GTTGGACTCTAAAACTCCTAACCACTCCATAAGTCATCCTTTGCCAGGGTCTCTTCTCCAACTTC
TGTCCGTTATCCTCTCAGTTACTTTCAATCACTTACAGCTACAATTACCTTCTCAGCTATTCTCC
GTTACTCTCTCCGTCTCTAGTCATCATCTTCTTCTCCACTCAGCCTCACAACCATTACCACCATG
ACTCGTGTAACATAAGCCCCCAACCGATGATCCCCGTGACTCCCCACCGTCCGGAATCCCACCCG
GGCGGGCCTCTACGTCCTGCTCGCTTCGTATCCAACTCTATTTCTAGAGAATGTCCTGCAAGTTT
CACCGGTGACAAAGGCCGAGACCTCATCACAGGACACGCTCGACCAGGAATCACAAGACACGCAC
AACACACGCAAGCCACGCTCCAGGGCGTCACGGGACACGCTCCAA
Found at i:11275 original size:24 final size:24
Alignment explanation
Indices: 11244--11297 Score: 81
Period size: 24 Copynumber: 2.2 Consensus size: 24
11234 ACATTTCTTT
*
11244 GCTACATTTCATCGTCATATCATC
1 GCTACATTTCATCGACATATCATC
*
11268 GCTACATTTCATCGACATTTCATC
1 GCTACATTTCATCGACATATCATC
*
11292 ACTACA
1 GCTACA
11298 CTTTAAAGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.28, C:0.30, G:0.07, T:0.35
Consensus pattern (24 bp):
GCTACATTTCATCGACATATCATC
Left flanking sequence: Indices 10744 -- 11243
CAACGCTCTGGAAACAACGTTGCAATGCAATCGAAGAAACCGTTGCCCGGTAGTTACACTCGCAT
TTTTGTTCTCGGTTGTGGGCGTGTTTTGCTCCTGATATCGTCATTTCGCTGAGCCACAATTCCGG
AATAAACGCGGCGTACGGCGTTACCACGGTCGATCCTATGACGAAATGCCGTAGCGTATCTGCTA
GCGATTTAGGGGGATAATTTGCGCATGAACCCCTATTGTTGTCCTGATACCATAGCCCAGTTAGT
CGAGCTACATGAAGCAACGCTACACGAATTATTACCGTACGCAAGCGTTCCGTACGCAAACGTTC
AGTACGCAAGCGGTGCAGGTTTAGTCAGGAGTGTTGGAGGTTAGCAGCTGCTTCGTCATTGCATT
TATGCTGGTAGATCTCCCATTGGCTCGGGTCTAGGCAATTCATCGCTACATTTTATCGGTAGATT
TCTTTGCTACATTTCATCGCTCTATTTTCATCGCTACATTTCTTT
Right flanking sequence: Indices 11298 -- 11797
CTTTAAAGAATAATTTTAAATCCCCACAAAGCCATCTCTTCATTGCTCCAATTGCTTTAGTTGGA
CTCTAAAACTCCTAACCACTCCATAAGTCATCCTTTGCCAGGGTCTCTTCTCCAACTTCTGTCCG
TTATCCTCTCAGTTACTTTCAATCACTTACAGCTACAATTACCTTCTCAGCTATTCTCCGTTACT
CTCTCCGTCTCTAGTCATCATCTTCTTCTCCACTCAGCCTCACAACCATTACCACCATGACTCGT
GTAACATAAGCCCCCAACCGATGATCCCCGTGACTCCCCACCGTCCGGAATCCCACCCGGGCGGG
CCTCTACGTCCTGCTCGCTTCGTATCCAACTCTATTTCTAGAGAATGTCCTGCAAGTTTCACCGG
TGACAAAGGCCGAGACCTCATCACAGGACACGCTCGACCAGGAATCACAAGACACGCACAACACA
CGCAAGCCACGCTCCAGGGCGTCACGGGACACGCTCCAACATCCG
Found at i:12700 original size:21 final size:21
Alignment explanation
Indices: 12676--12723 Score: 53
Period size: 21 Copynumber: 2.3 Consensus size: 21
12666 ACCGAGCCTC
* *
12676 AACCAGCGCAAACCACTGAAGA
1 AACCAGCCCAAACCACCGAA-A
*
12698 ACCCA-CCCAAACCACCGAAA
1 AACCAGCCCAAACCACCGAAA
12718 AACCAG
1 AACCAG
12724 TGGAAACCTC
Statistics
Matches: 21, Mismatches: 4, Indels: 3
0.75 0.14 0.11
Matches are distributed among these distances:
20 5 0.24
21 12 0.57
22 4 0.19
ACGTcount: A:0.46, C:0.40, G:0.12, T:0.02
Consensus pattern (21 bp):
AACCAGCCCAAACCACCGAAA
Left flanking sequence: Indices 12176 -- 12675
GGTGGACGAGGCGAAGGACAGGGACGGACCTGGTAGCGCCGGGGAAGCCAAGGGAGCGAAGGGTG
AAAAAGTGGGGAAAGAGGGGGAAGGGGCGGTAAAGACGGTAAAGGACGCGGTGGAGGCGGTAAAA
GACGTTGCTGGTGACGGTGCTGAGGCGCTCATTGACTTTGGAAGCGAGGCACAGGGCGAAACCAG
CGTGGAAAGGGGTTCTGAGCCCAAACACGAGGAATCGACCCTGGGTAAAGCCAGCGAAACCGGTG
AGATTCTGGCCGAAAACAACGAAACCAGCGGCGAAAAGGGTACTCAACCGGCTAATACCGTTGAG
AACGAGCATGAGCCGGTGGATTCAGCCCCAAAACCGGTGGAAAACGAGCCGAAACTCGAAAACCA
GTCTGAAAAAGTGGTTGAAACTGAGCAACCGGTGGAAACTGAGCCGAAACTAGTGGAAACCGAGC
AGGAACCAGCTCATACCACCGAAAAGCCAGTGGAAACCGAGCCTC
Right flanking sequence: Indices 12724 -- 13223
TGGAAACCTCCAAAAAGCCAACCGAATCCGACCCAAAAACAACCCAAACCACCAAACAAACCGCT
GAACCCAGCCCAATCCCACTGGAAACCCAAAAAACCACAGAATCATTGGCCACCCCAGAACCCAC
CCCTGAGCCCACCCCCAAGATAGCCCGCCTTCAGCGCCAGCTCATCACCGCCCAGAGCGAGCTCG
CCTCCCTCAAGGCCACCCACGCCCAGGAACTCGCCGCCCTCAAAGCCCAGGTGGCCCGTCCGCTG
GCCCTAGAGACCAAACTCGCCCAGAAGGACCAGCAGATCGCCGAGCTCCTCCGCGAGGGAGAAGT
CCTCAGCAAAAAGGAACTCAAGCTCAACGAGCTGATCAAACGGCTCAAACAGGAGAACGCCAGCC
TCGAACACACCCTCGCGGACTACCTGCGCAAGTCCGACGACGGCCAGCGCCAGCTCGTAGAGCTC
CACGACGCCCTCAAGCTCGCGGGACTCGCGCTGGTGGACCAGTTG
Found at i:14078 original size:15 final size:15
Alignment explanation
Indices: 14058--14134 Score: 79
Period size: 15 Copynumber: 5.3 Consensus size: 15
14048 GGGGTTTGGA
*
14058 AACGAGCGTTCTTTT
1 AACGAGCGTTCGTTT
14073 AACGAGCGTTCGTTT
1 AACGAGCGTTCGTTT
*
14088 AATGAGCGTTCGTTT
1 AACGAGCGTTCGTTT
* *
14103 ---GACCGCTCGTTT
1 AACGAGCGTTCGTTT
* *
14115 AATGAGCGTTCTTTT
1 AACGAGCGTTCGTTT
14130 AACGA
1 AACGA
14135 CCGTCCTTTT
Statistics
Matches: 51, Mismatches: 8, Indels: 6
0.78 0.12 0.09
Matches are distributed among these distances:
12 10 0.20
15 41 0.80
ACGTcount: A:0.21, C:0.19, G:0.23, T:0.36
Consensus pattern (15 bp):
AACGAGCGTTCGTTT
Left flanking sequence: Indices 13558 -- 14057
CACGCGGGCTGGCCACCGCCCAGGAGTACGCCCGGCTCTCCGAGGCCCACCTGGCGCTCCAGAGC
CAGTACCTCGCGGCCCAGGAGAACTGGAAGCTCCTCGAGGTGCGGATGAAGGCGCGGGCGGACGC
GGTGGAGGGCCAGCTCGAGAACGTGACCAAGCTCAAGAACCGGGCGGTGGCCGAGCTCAAGCGGG
CGAACGTGGTCGCGGCCGAGGTCGAGCTGAGTGCGCAGGGGGCGGCTGGCGATGCGGAGCGGCTC
CGGGCCCGGGTCAAGCAGGCGGAGATGGCGCTTGCGATGAAGCAGGGCGAGGTGGAGGAGGCCCA
GCAGCGGGCGGAGCGGATGCAGCAGGTGTACGCTCATGATAGGGAGGACTTGGAGCGGCGGTTGG
CGGTGGCCGAGCGGGCGATGAGGGAAGCGAAGGTGGAGAGAGGCCTGGAGAGGGTAGACAGAGCG
AGTCTTGGCGGAGTAGACAGAGTGAGCAGTGATGGGGGGTTTGGA
Right flanking sequence: Indices 14135 -- 14634
CCGTCCTTTTACCATTGCTGAGCGGATCCCGTCGTTGGGGAACATCCCCACGCTTCCCGAGGGGC
CAGAGACCCGGGAAAGCCGCCTGGAGAGCCGGGAACGACGCCTGGGAAGCAGACTGGGAAGCAGG
CTGGAAAACAGGCGGGAAAGCAGGCTGGAAAACAGACCCGAAAGCCGTCTGTTTGGGTCGCTGGA
CCACTTGCGAGACTCCCGAGGCGACTCCAGGACCGAGTTGGCCCGTGTGTCTTCCGACCGACTGG
ACTTTGCGAGATCCGACCGGGACCTTGCGAGAGCCTCGTCCGACCAGAATATCACCGTCTCGGAC
AGCCGCCTGGACCTCTTCGTCCCCCGTTCTCGCAAGCCCCTGGTCGTCTCCGGGGTGTCGGACTT
GGGCCTGGAGCTGGACCGCGACACCATCCAACGGCTGTTTGACGACGGGCCACAGACCGGCCACG
TGCACGTGCTCAGCCAGATGGCGGCGCTGGTGCGGCGGCTCGAGG
Found at i:14231 original size:21 final size:21
Alignment explanation
Indices: 14202--14244 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
14192 CGAGGGGCCA
*
14202 GAGACCCGGGAAAGCCGCCTG
1 GAGACCCGGGAAAGACGCCTG
* *
14223 GAGAGCCGGGAACGACGCCTG
1 GAGACCCGGGAAAGACGCCTG
14244 G
1 G
14245 GAAGCAGACT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.23, C:0.30, G:0.42, T:0.05
Consensus pattern (21 bp):
GAGACCCGGGAAAGACGCCTG
Left flanking sequence: Indices 13702 -- 14201
TCGAGAACGTGACCAAGCTCAAGAACCGGGCGGTGGCCGAGCTCAAGCGGGCGAACGTGGTCGCG
GCCGAGGTCGAGCTGAGTGCGCAGGGGGCGGCTGGCGATGCGGAGCGGCTCCGGGCCCGGGTCAA
GCAGGCGGAGATGGCGCTTGCGATGAAGCAGGGCGAGGTGGAGGAGGCCCAGCAGCGGGCGGAGC
GGATGCAGCAGGTGTACGCTCATGATAGGGAGGACTTGGAGCGGCGGTTGGCGGTGGCCGAGCGG
GCGATGAGGGAAGCGAAGGTGGAGAGAGGCCTGGAGAGGGTAGACAGAGCGAGTCTTGGCGGAGT
AGACAGAGTGAGCAGTGATGGGGGGTTTGGAAACGAGCGTTCTTTTAACGAGCGTTCGTTTAATG
AGCGTTCGTTTGACCGCTCGTTTAATGAGCGTTCTTTTAACGACCGTCCTTTTACCATTGCTGAG
CGGATCCCGTCGTTGGGGAACATCCCCACGCTTCCCGAGGGGCCA
Right flanking sequence: Indices 14245 -- 14744
GAAGCAGACTGGGAAGCAGGCTGGAAAACAGGCGGGAAAGCAGGCTGGAAAACAGACCCGAAAGC
CGTCTGTTTGGGTCGCTGGACCACTTGCGAGACTCCCGAGGCGACTCCAGGACCGAGTTGGCCCG
TGTGTCTTCCGACCGACTGGACTTTGCGAGATCCGACCGGGACCTTGCGAGAGCCTCGTCCGACC
AGAATATCACCGTCTCGGACAGCCGCCTGGACCTCTTCGTCCCCCGTTCTCGCAAGCCCCTGGTC
GTCTCCGGGGTGTCGGACTTGGGCCTGGAGCTGGACCGCGACACCATCCAACGGCTGTTTGACGA
CGGGCCACAGACCGGCCACGTGCACGTGCTCAGCCAGATGGCGGCGCTGGTGCGGCGGCTCGAGG
TGGAGATGGCCACGGTGCGCGAGGACAACGCCCAGCTCCAGCGGCTGAACCACGAGCTCTCCGAG
CAGTACTTGGCGCTGTTGCGGCGGGTGGAGGGGGCCGAGGCGCAC
Found at i:14276 original size:12 final size:12
Alignment explanation
Indices: 14261--14299 Score: 60
Period size: 12 Copynumber: 3.2 Consensus size: 12
14251 GACTGGGAAG
14261 CAGGCTGGAAAA
1 CAGGCTGGAAAA
* *
14273 CAGGCGGGAAAG
1 CAGGCTGGAAAA
14285 CAGGCTGGAAAA
1 CAGGCTGGAAAA
14297 CAG
1 CAG
14300 ACCCGAAAGC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.38, C:0.18, G:0.38, T:0.05
Consensus pattern (12 bp):
CAGGCTGGAAAA
Left flanking sequence: Indices 13761 -- 14260
GTCGCGGCCGAGGTCGAGCTGAGTGCGCAGGGGGCGGCTGGCGATGCGGAGCGGCTCCGGGCCCG
GGTCAAGCAGGCGGAGATGGCGCTTGCGATGAAGCAGGGCGAGGTGGAGGAGGCCCAGCAGCGGG
CGGAGCGGATGCAGCAGGTGTACGCTCATGATAGGGAGGACTTGGAGCGGCGGTTGGCGGTGGCC
GAGCGGGCGATGAGGGAAGCGAAGGTGGAGAGAGGCCTGGAGAGGGTAGACAGAGCGAGTCTTGG
CGGAGTAGACAGAGTGAGCAGTGATGGGGGGTTTGGAAACGAGCGTTCTTTTAACGAGCGTTCGT
TTAATGAGCGTTCGTTTGACCGCTCGTTTAATGAGCGTTCTTTTAACGACCGTCCTTTTACCATT
GCTGAGCGGATCCCGTCGTTGGGGAACATCCCCACGCTTCCCGAGGGGCCAGAGACCCGGGAAAG
CCGCCTGGAGAGCCGGGAACGACGCCTGGGAAGCAGACTGGGAAG
Right flanking sequence: Indices 14300 -- 14799
ACCCGAAAGCCGTCTGTTTGGGTCGCTGGACCACTTGCGAGACTCCCGAGGCGACTCCAGGACCG
AGTTGGCCCGTGTGTCTTCCGACCGACTGGACTTTGCGAGATCCGACCGGGACCTTGCGAGAGCC
TCGTCCGACCAGAATATCACCGTCTCGGACAGCCGCCTGGACCTCTTCGTCCCCCGTTCTCGCAA
GCCCCTGGTCGTCTCCGGGGTGTCGGACTTGGGCCTGGAGCTGGACCGCGACACCATCCAACGGC
TGTTTGACGACGGGCCACAGACCGGCCACGTGCACGTGCTCAGCCAGATGGCGGCGCTGGTGCGG
CGGCTCGAGGTGGAGATGGCCACGGTGCGCGAGGACAACGCCCAGCTCCAGCGGCTGAACCACGA
GCTCTCCGAGCAGTACTTGGCGCTGTTGCGGCGGGTGGAGGGGGCCGAGGCGCACGAGAAGGAGC
TCGCGGAGCTCAGGCAGGCGTTGGAGCGCCAGCAGGCGAAGGAGC
Found at i:14307 original size:24 final size:24
Alignment explanation
Indices: 14258--14309 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
14248 GCAGACTGGG
* **
14258 AAGCAGGCTGGAAAACAGGCGGGA
1 AAGCAGGCTGGAAAACAGACCCGA
14282 AAGCAGGCTGGAAAACAGACCCGA
1 AAGCAGGCTGGAAAACAGACCCGA
14306 AAGC
1 AAGC
14310 CGTCTGTTTG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.40, C:0.21, G:0.35, T:0.04
Consensus pattern (24 bp):
AAGCAGGCTGGAAAACAGACCCGA
Left flanking sequence: Indices 13758 -- 14257
GTGGTCGCGGCCGAGGTCGAGCTGAGTGCGCAGGGGGCGGCTGGCGATGCGGAGCGGCTCCGGGC
CCGGGTCAAGCAGGCGGAGATGGCGCTTGCGATGAAGCAGGGCGAGGTGGAGGAGGCCCAGCAGC
GGGCGGAGCGGATGCAGCAGGTGTACGCTCATGATAGGGAGGACTTGGAGCGGCGGTTGGCGGTG
GCCGAGCGGGCGATGAGGGAAGCGAAGGTGGAGAGAGGCCTGGAGAGGGTAGACAGAGCGAGTCT
TGGCGGAGTAGACAGAGTGAGCAGTGATGGGGGGTTTGGAAACGAGCGTTCTTTTAACGAGCGTT
CGTTTAATGAGCGTTCGTTTGACCGCTCGTTTAATGAGCGTTCTTTTAACGACCGTCCTTTTACC
ATTGCTGAGCGGATCCCGTCGTTGGGGAACATCCCCACGCTTCCCGAGGGGCCAGAGACCCGGGA
AAGCCGCCTGGAGAGCCGGGAACGACGCCTGGGAAGCAGACTGGG
Right flanking sequence: Indices 14310 -- 14809
CGTCTGTTTGGGTCGCTGGACCACTTGCGAGACTCCCGAGGCGACTCCAGGACCGAGTTGGCCCG
TGTGTCTTCCGACCGACTGGACTTTGCGAGATCCGACCGGGACCTTGCGAGAGCCTCGTCCGACC
AGAATATCACCGTCTCGGACAGCCGCCTGGACCTCTTCGTCCCCCGTTCTCGCAAGCCCCTGGTC
GTCTCCGGGGTGTCGGACTTGGGCCTGGAGCTGGACCGCGACACCATCCAACGGCTGTTTGACGA
CGGGCCACAGACCGGCCACGTGCACGTGCTCAGCCAGATGGCGGCGCTGGTGCGGCGGCTCGAGG
TGGAGATGGCCACGGTGCGCGAGGACAACGCCCAGCTCCAGCGGCTGAACCACGAGCTCTCCGAG
CAGTACTTGGCGCTGTTGCGGCGGGTGGAGGGGGCCGAGGCGCACGAGAAGGAGCTCGCGGAGCT
CAGGCAGGCGTTGGAGCGCCAGCAGGCGAAGGAGCGCACGATGTT
Found at i:14989 original size:12 final size:12
Alignment explanation
Indices: 14972--15027 Score: 55
Period size: 12 Copynumber: 4.9 Consensus size: 12
14962 GGGGGTAGGT
14972 AGTGAGACTGCC
1 AGTGAGACTGCC
*
14984 AGTGAGACTGCT
1 AGTGAGACTGCC
*
14996 A--GAGACTGCT
1 AGTGAGACTGCC
* *
15006 AATGAGGCTGCC
1 AGTGAGACTGCC
15018 AGTGA-ACTGC
1 AGTGAGACTGC
15028 GAGACTACTA
Statistics
Matches: 37, Mismatches: 5, Indels: 5
0.79 0.11 0.11
Matches are distributed among these distances:
10 10 0.27
11 4 0.11
12 23 0.62
ACGTcount: A:0.27, C:0.21, G:0.32, T:0.20
Consensus pattern (12 bp):
AGTGAGACTGCC
Left flanking sequence: Indices 14472 -- 14971
CTCTTCGTCCCCCGTTCTCGCAAGCCCCTGGTCGTCTCCGGGGTGTCGGACTTGGGCCTGGAGCT
GGACCGCGACACCATCCAACGGCTGTTTGACGACGGGCCACAGACCGGCCACGTGCACGTGCTCA
GCCAGATGGCGGCGCTGGTGCGGCGGCTCGAGGTGGAGATGGCCACGGTGCGCGAGGACAACGCC
CAGCTCCAGCGGCTGAACCACGAGCTCTCCGAGCAGTACTTGGCGCTGTTGCGGCGGGTGGAGGG
GGCCGAGGCGCACGAGAAGGAGCTCGCGGAGCTCAGGCAGGCGTTGGAGCGCCAGCAGGCGAAGG
AGCGCACGATGTTGGAGGTGCTTGGCGAGAAGACCGAGCAGGTGCAGGAGCTCGAGGCCGACGTG
GTGGACTTGAAGGACTTGTTGCGGCTGCAGGTGCAGCAGATGGTGGAGATGCAAGAGGCGGTGGC
GAAGAGGTGAGTGCAAGACTACAAGGGTGACTACAGGGGGTAGGT
Right flanking sequence: Indices 15028 -- 15527
GAGACTACTAGTGTGGGACTGCTAGCGTGGTGATCATGGTGGTATCACTGGTGGTCTTTATTGTG
CGAGAGCCTCGTCGTACCAGCTTTGAGATACATAGATAGATTCATAGGTATGGATGTCATTCATT
CGGACCCGGCTGTTTGGTAGTGTGATGGAGAGAAGAATGGGTTTAGGGGGATTCAGGTCTAGAGA
GGTAGGTCTAGAGAGATAGGTCTAGAGAGATAGGTCTAAAGAGATTGTTCTAGAGAGATAGGTCT
AGAGAGATAGGTCTAGAGAGTTTCATAAAGATTCCTAAGACTAGAGAGACTCATAGGTCCATAGA
GATACATAGAGATCCATAGAGATTCATCGAAATTCTTAAATCTAGAGTGATTGATAGGTTCAGAG
AGATTCAGTTCTAGAGAGATTAGGTTTAGAGAAATCAGGTCTAGAGATTCATAGGTCTGGATGGC
ACTTTATTCGATATGCCTAGGGCGGTTGATTGGGTTTAGAGGTGG
Found at i:15011 original size:22 final size:22
Alignment explanation
Indices: 14975--15016 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
14965 GGTAGGTAGT
*
14975 GAGACTGCCAGTGAGACTGCTA
1 GAGACTGCCAATGAGACTGCTA
* *
14997 GAGACTGCTAATGAGGCTGC
1 GAGACTGCCAATGAGACTGC
15017 CAGTGAACTG
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.26, C:0.21, G:0.33, T:0.19
Consensus pattern (22 bp):
GAGACTGCCAATGAGACTGCTA
Left flanking sequence: Indices 14475 -- 14974
TTCGTCCCCCGTTCTCGCAAGCCCCTGGTCGTCTCCGGGGTGTCGGACTTGGGCCTGGAGCTGGA
CCGCGACACCATCCAACGGCTGTTTGACGACGGGCCACAGACCGGCCACGTGCACGTGCTCAGCC
AGATGGCGGCGCTGGTGCGGCGGCTCGAGGTGGAGATGGCCACGGTGCGCGAGGACAACGCCCAG
CTCCAGCGGCTGAACCACGAGCTCTCCGAGCAGTACTTGGCGCTGTTGCGGCGGGTGGAGGGGGC
CGAGGCGCACGAGAAGGAGCTCGCGGAGCTCAGGCAGGCGTTGGAGCGCCAGCAGGCGAAGGAGC
GCACGATGTTGGAGGTGCTTGGCGAGAAGACCGAGCAGGTGCAGGAGCTCGAGGCCGACGTGGTG
GACTTGAAGGACTTGTTGCGGCTGCAGGTGCAGCAGATGGTGGAGATGCAAGAGGCGGTGGCGAA
GAGGTGAGTGCAAGACTACAAGGGTGACTACAGGGGGTAGGTAGT
Right flanking sequence: Indices 15017 -- 15516
CAGTGAACTGCGAGACTACTAGTGTGGGACTGCTAGCGTGGTGATCATGGTGGTATCACTGGTGG
TCTTTATTGTGCGAGAGCCTCGTCGTACCAGCTTTGAGATACATAGATAGATTCATAGGTATGGA
TGTCATTCATTCGGACCCGGCTGTTTGGTAGTGTGATGGAGAGAAGAATGGGTTTAGGGGGATTC
AGGTCTAGAGAGGTAGGTCTAGAGAGATAGGTCTAGAGAGATAGGTCTAAAGAGATTGTTCTAGA
GAGATAGGTCTAGAGAGATAGGTCTAGAGAGTTTCATAAAGATTCCTAAGACTAGAGAGACTCAT
AGGTCCATAGAGATACATAGAGATCCATAGAGATTCATCGAAATTCTTAAATCTAGAGTGATTGA
TAGGTTCAGAGAGATTCAGTTCTAGAGAGATTAGGTTTAGAGAAATCAGGTCTAGAGATTCATAG
GTCTGGATGGCACTTTATTCGATATGCCTAGGGCGGTTGATTGGG
Found at i:15231 original size:14 final size:14
Alignment explanation
Indices: 15212--15307 Score: 156
Period size: 14 Copynumber: 6.9 Consensus size: 14
15202 AGGGGGATTC
*
15212 AGGTCTAGAGAGGT
1 AGGTCTAGAGAGAT
15226 AGGTCTAGAGAGAT
1 AGGTCTAGAGAGAT
15240 AGGTCTAGAGAGAT
1 AGGTCTAGAGAGAT
*
15254 AGGTCTAAAGAGAT
1 AGGTCTAGAGAGAT
* *
15268 TGTTCTAGAGAGAT
1 AGGTCTAGAGAGAT
15282 AGGTCTAGAGAGAT
1 AGGTCTAGAGAGAT
15296 AGGTCTAGAGAG
1 AGGTCTAGAGAG
15308 TTTCATAAAG
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 75 1.00
ACGTcount: A:0.34, C:0.07, G:0.35, T:0.23
Consensus pattern (14 bp):
AGGTCTAGAGAGAT
Left flanking sequence: Indices 14712 -- 15211
CTGTTGCGGCGGGTGGAGGGGGCCGAGGCGCACGAGAAGGAGCTCGCGGAGCTCAGGCAGGCGTT
GGAGCGCCAGCAGGCGAAGGAGCGCACGATGTTGGAGGTGCTTGGCGAGAAGACCGAGCAGGTGC
AGGAGCTCGAGGCCGACGTGGTGGACTTGAAGGACTTGTTGCGGCTGCAGGTGCAGCAGATGGTG
GAGATGCAAGAGGCGGTGGCGAAGAGGTGAGTGCAAGACTACAAGGGTGACTACAGGGGGTAGGT
AGTGAGACTGCCAGTGAGACTGCTAGAGACTGCTAATGAGGCTGCCAGTGAACTGCGAGACTACT
AGTGTGGGACTGCTAGCGTGGTGATCATGGTGGTATCACTGGTGGTCTTTATTGTGCGAGAGCCT
CGTCGTACCAGCTTTGAGATACATAGATAGATTCATAGGTATGGATGTCATTCATTCGGACCCGG
CTGTTTGGTAGTGTGATGGAGAGAAGAATGGGTTTAGGGGGATTC
Right flanking sequence: Indices 15308 -- 15807
TTTCATAAAGATTCCTAAGACTAGAGAGACTCATAGGTCCATAGAGATACATAGAGATCCATAGA
GATTCATCGAAATTCTTAAATCTAGAGTGATTGATAGGTTCAGAGAGATTCAGTTCTAGAGAGAT
TAGGTTTAGAGAAATCAGGTCTAGAGATTCATAGGTCTGGATGGCACTTTATTCGATATGCCTAG
GGCGGTTGATTGGGTTTAGAGGTGGTGGTAGAGACTCTATAGGGGAGAACCTTAATGACAAATTC
TCCCCTATAACACCACCGATTACAGGCGATATTTCATTTAATCAGACTTTATACGGGCCACATTA
GTTATCAGATACGCCTTATATCATATAAACCTAACGGATCAATTCAATACTTGCTGAATCCACAG
TTCGAACGCTCGAACATTGACACTACCCGTTGTATTAGCACCATGGTGAGGCATCGAGAGCTAGA
ACGTCGTGTATTGATTAAGCGAATGGCCTATCTGAGCCCATCCAT
Found at i:15447 original size:15 final size:15
Alignment explanation
Indices: 15407--15464 Score: 55
Period size: 15 Copynumber: 3.8 Consensus size: 15
15397 GAGTGATTGA
*
15407 TAGGTTCAGAGAGAT
1 TAGGTTTAGAGAGAT
15422 TCA-GTTCTAGAGAGAT
1 T-AGGTT-TAGAGAGAT
*
15438 TAGGTTTAGAGAAAT
1 TAGGTTTAGAGAGAT
* *
15453 CAGGTCTAGAGA
1 TAGGTTTAGAGA
15465 TTCATAGGTC
Statistics
Matches: 36, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
15 23 0.64
16 13 0.36
ACGTcount: A:0.34, C:0.09, G:0.29, T:0.28
Consensus pattern (15 bp):
TAGGTTTAGAGAGAT
Left flanking sequence: Indices 14907 -- 15406
GAGATGCAAGAGGCGGTGGCGAAGAGGTGAGTGCAAGACTACAAGGGTGACTACAGGGGGTAGGT
AGTGAGACTGCCAGTGAGACTGCTAGAGACTGCTAATGAGGCTGCCAGTGAACTGCGAGACTACT
AGTGTGGGACTGCTAGCGTGGTGATCATGGTGGTATCACTGGTGGTCTTTATTGTGCGAGAGCCT
CGTCGTACCAGCTTTGAGATACATAGATAGATTCATAGGTATGGATGTCATTCATTCGGACCCGG
CTGTTTGGTAGTGTGATGGAGAGAAGAATGGGTTTAGGGGGATTCAGGTCTAGAGAGGTAGGTCT
AGAGAGATAGGTCTAGAGAGATAGGTCTAAAGAGATTGTTCTAGAGAGATAGGTCTAGAGAGATA
GGTCTAGAGAGTTTCATAAAGATTCCTAAGACTAGAGAGACTCATAGGTCCATAGAGATACATAG
AGATCCATAGAGATTCATCGAAATTCTTAAATCTAGAGTGATTGA
Right flanking sequence: Indices 15465 -- 15964
TTCATAGGTCTGGATGGCACTTTATTCGATATGCCTAGGGCGGTTGATTGGGTTTAGAGGTGGTG
GTAGAGACTCTATAGGGGAGAACCTTAATGACAAATTCTCCCCTATAACACCACCGATTACAGGC
GATATTTCATTTAATCAGACTTTATACGGGCCACATTAGTTATCAGATACGCCTTATATCATATA
AACCTAACGGATCAATTCAATACTTGCTGAATCCACAGTTCGAACGCTCGAACATTGACACTACC
CGTTGTATTAGCACCATGGTGAGGCATCGAGAGCTAGAACGTCGTGTATTGATTAAGCGAATGGC
CTATCTGAGCCCATCCATTCATTAGTGAGCAGAGAACATGACTACTACGACTAACCCTCCACCTA
AGGCTAGCACACCGCAGAAAGGATACTAACCCACCGTGGTAGCGTCTTTCAAAATAGAGATAGGC
CATATGTCTAGATGTCATTTCATTCGATATGAGTCTAGAAGTGGT
Found at i:15463 original size:30 final size:31
Alignment explanation
Indices: 15407--15464 Score: 82
Period size: 30 Copynumber: 1.9 Consensus size: 31
15397 GAGTGATTGA
* *
15407 TAGGTTCAGAGAGATTCAGTTCTAGAGAGAT
1 TAGGTTCAGAGAGAATCAGGTCTAGAGAGAT
*
15438 TAGGTTTAGAGA-AATCAGGTCTAGAGA
1 TAGGTTCAGAGAGAATCAGGTCTAGAGA
15465 TTCATAGGTC
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
30 13 0.54
31 11 0.46
ACGTcount: A:0.34, C:0.09, G:0.29, T:0.28
Consensus pattern (31 bp):
TAGGTTCAGAGAGAATCAGGTCTAGAGAGAT
Left flanking sequence: Indices 14907 -- 15406
GAGATGCAAGAGGCGGTGGCGAAGAGGTGAGTGCAAGACTACAAGGGTGACTACAGGGGGTAGGT
AGTGAGACTGCCAGTGAGACTGCTAGAGACTGCTAATGAGGCTGCCAGTGAACTGCGAGACTACT
AGTGTGGGACTGCTAGCGTGGTGATCATGGTGGTATCACTGGTGGTCTTTATTGTGCGAGAGCCT
CGTCGTACCAGCTTTGAGATACATAGATAGATTCATAGGTATGGATGTCATTCATTCGGACCCGG
CTGTTTGGTAGTGTGATGGAGAGAAGAATGGGTTTAGGGGGATTCAGGTCTAGAGAGGTAGGTCT
AGAGAGATAGGTCTAGAGAGATAGGTCTAAAGAGATTGTTCTAGAGAGATAGGTCTAGAGAGATA
GGTCTAGAGAGTTTCATAAAGATTCCTAAGACTAGAGAGACTCATAGGTCCATAGAGATACATAG
AGATCCATAGAGATTCATCGAAATTCTTAAATCTAGAGTGATTGA
Right flanking sequence: Indices 15465 -- 15964
TTCATAGGTCTGGATGGCACTTTATTCGATATGCCTAGGGCGGTTGATTGGGTTTAGAGGTGGTG
GTAGAGACTCTATAGGGGAGAACCTTAATGACAAATTCTCCCCTATAACACCACCGATTACAGGC
GATATTTCATTTAATCAGACTTTATACGGGCCACATTAGTTATCAGATACGCCTTATATCATATA
AACCTAACGGATCAATTCAATACTTGCTGAATCCACAGTTCGAACGCTCGAACATTGACACTACC
CGTTGTATTAGCACCATGGTGAGGCATCGAGAGCTAGAACGTCGTGTATTGATTAAGCGAATGGC
CTATCTGAGCCCATCCATTCATTAGTGAGCAGAGAACATGACTACTACGACTAACCCTCCACCTA
AGGCTAGCACACCGCAGAAAGGATACTAACCCACCGTGGTAGCGTCTTTCAAAATAGAGATAGGC
CATATGTCTAGATGTCATTTCATTCGATATGAGTCTAGAAGTGGT
Found at i:16275 original size:5 final size:5
Alignment explanation
Indices: 16259--16315 Score: 73
Period size: 5 Copynumber: 11.8 Consensus size: 5
16249 ATGTACCACC
* *
16259 CTCCT CTTCT CTCCT CTCCT CTCC- CTTCT CTCCT CTCC- CTCCT CTCCT
1 CTCCT CTCCT CTCCT CTCCT CTCCT CTCCT CTCCT CTCCT CTCCT CTCCT
*
16307 CTTCT CTCC
1 CTCCT CTCC
16316 CATCACTCCC
Statistics
Matches: 44, Mismatches: 6, Indels: 4
0.81 0.11 0.07
Matches are distributed among these distances:
4 7 0.16
5 37 0.84
ACGTcount: A:0.00, C:0.58, G:0.00, T:0.42
Consensus pattern (5 bp):
CTCCT
Left flanking sequence: Indices 15759 -- 16258
TAGAACGTCGTGTATTGATTAAGCGAATGGCCTATCTGAGCCCATCCATTCATTAGTGAGCAGAG
AACATGACTACTACGACTAACCCTCCACCTAAGGCTAGCACACCGCAGAAAGGATACTAACCCAC
CGTGGTAGCGTCTTTCAAAATAGAGATAGGCCATATGTCTAGATGTCATTTCATTCGATATGAGT
CTAGAAGTGGTACTGGAGAAGGTGTCGTAGCAAATCTAGATCTCACCAGGGGAATACACTTCGTA
CATAGTGGTTAAGAACGATAGGCCCAGTGGTAGTGTCAATTGGCTTAGTTTATCATTTTTAACTC
TTCATTTCCATCGTAGTCTCTAGAGAAATGGAAACAAACTATTGTCTACCTACTCCACCAACACA
CTATTCCACAGTATCAATACAATGGCTATCCTACAAATCTTCCTCCATCGCGAGATCTCCCCTAC
TTCTTTACCCCACCATCCCCACCCACCCATCTACCATGTACCACC
Right flanking sequence: Indices 16316 -- 16815
CATCACTCCCCTTCCCTCTTCCCCTCTCTTTTCCTACCTCCCACACCCACCCTGCACTCCCGCGA
AGGGCATCGCGCCAAATCCACGCGCACCGCACCCAGGCACACCATGGCAGGCGTGAGCACATACA
TCGAGGACACCGTCTACGCCAACGTCATCGCCAAGGCCGGCCGCAACGAGCTCCAGCTCGGCCGC
CTCGCCGACGACGGCACGTTGGCCCCCGCCTCCCACAAGTTCGAGCTCCTGGCCGAGGAAACGGT
CTCGGACGGGGCATGGGTGGCGGCCCCGCCGCTGAAGAAGAAGCGCTCGCGCGACCCCAACGCCT
CCCCCTCTTCCTCCTCCTCCTCCTCCGCCCGGGTCTTCTGTGCGGTGTTGCCCACCCACGTCGCC
GCGTTCGACACGGGGGCCCCGCGCCCGGTGGTGGCCGGCGCCTTCGCCGCGGTGGCCGCGGGCAA
CGGCTCCGTGTGGGCGGCGCTGGCGGAGCGCGTCGAGGAGTTCGC
Found at i:16288 original size:19 final size:19
Alignment explanation
Indices: 16257--16316 Score: 86
Period size: 19 Copynumber: 3.2 Consensus size: 19
16247 CCATGTACCA
16257 CCCTCCTCTTCTCTCCTCT
1 CCCTCCTCTTCTCTCCTCT
16276 CCTCTCC-CTTCTCTCCTCT
1 CC-CTCCTCTTCTCTCCTCT
* *
16295 CCCTCCTCTCCTCTTCTCT
1 CCCTCCTCTTCTCTCCTCT
16314 CCC
1 CCC
16317 ATCACTCCCC
Statistics
Matches: 37, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
18 4 0.11
19 29 0.78
20 4 0.11
ACGTcount: A:0.00, C:0.60, G:0.00, T:0.40
Consensus pattern (19 bp):
CCCTCCTCTTCTCTCCTCT
Left flanking sequence: Indices 15757 -- 16256
GCTAGAACGTCGTGTATTGATTAAGCGAATGGCCTATCTGAGCCCATCCATTCATTAGTGAGCAG
AGAACATGACTACTACGACTAACCCTCCACCTAAGGCTAGCACACCGCAGAAAGGATACTAACCC
ACCGTGGTAGCGTCTTTCAAAATAGAGATAGGCCATATGTCTAGATGTCATTTCATTCGATATGA
GTCTAGAAGTGGTACTGGAGAAGGTGTCGTAGCAAATCTAGATCTCACCAGGGGAATACACTTCG
TACATAGTGGTTAAGAACGATAGGCCCAGTGGTAGTGTCAATTGGCTTAGTTTATCATTTTTAAC
TCTTCATTTCCATCGTAGTCTCTAGAGAAATGGAAACAAACTATTGTCTACCTACTCCACCAACA
CACTATTCCACAGTATCAATACAATGGCTATCCTACAAATCTTCCTCCATCGCGAGATCTCCCCT
ACTTCTTTACCCCACCATCCCCACCCACCCATCTACCATGTACCA
Right flanking sequence: Indices 16317 -- 16816
ATCACTCCCCTTCCCTCTTCCCCTCTCTTTTCCTACCTCCCACACCCACCCTGCACTCCCGCGAA
GGGCATCGCGCCAAATCCACGCGCACCGCACCCAGGCACACCATGGCAGGCGTGAGCACATACAT
CGAGGACACCGTCTACGCCAACGTCATCGCCAAGGCCGGCCGCAACGAGCTCCAGCTCGGCCGCC
TCGCCGACGACGGCACGTTGGCCCCCGCCTCCCACAAGTTCGAGCTCCTGGCCGAGGAAACGGTC
TCGGACGGGGCATGGGTGGCGGCCCCGCCGCTGAAGAAGAAGCGCTCGCGCGACCCCAACGCCTC
CCCCTCTTCCTCCTCCTCCTCCTCCGCCCGGGTCTTCTGTGCGGTGTTGCCCACCCACGTCGCCG
CGTTCGACACGGGGGCCCCGCGCCCGGTGGTGGCCGGCGCCTTCGCCGCGGTGGCCGCGGGCAAC
GGCTCCGTGTGGGCGGCGCTGGCGGAGCGCGTCGAGGAGTTCGCC
Found at i:16291 original size:14 final size:14
Alignment explanation
Indices: 16259--16308 Score: 73
Period size: 14 Copynumber: 3.5 Consensus size: 14
16249 ATGTACCACC
*
16259 CTCCTCTTCTCTCCT
1 CTCCTC-TCCCTCCT
*
16274 CTCCTCTCCCTTCT
1 CTCCTCTCCCTCCT
16288 CTCCTCTCCCTCCT
1 CTCCTCTCCCTCCT
16302 CTCCTCT
1 CTCCTCT
16309 TCTCTCCCAT
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
14 26 0.81
15 6 0.19
ACGTcount: A:0.00, C:0.58, G:0.00, T:0.42
Consensus pattern (14 bp):
CTCCTCTCCCTCCT
Left flanking sequence: Indices 15759 -- 16258
TAGAACGTCGTGTATTGATTAAGCGAATGGCCTATCTGAGCCCATCCATTCATTAGTGAGCAGAG
AACATGACTACTACGACTAACCCTCCACCTAAGGCTAGCACACCGCAGAAAGGATACTAACCCAC
CGTGGTAGCGTCTTTCAAAATAGAGATAGGCCATATGTCTAGATGTCATTTCATTCGATATGAGT
CTAGAAGTGGTACTGGAGAAGGTGTCGTAGCAAATCTAGATCTCACCAGGGGAATACACTTCGTA
CATAGTGGTTAAGAACGATAGGCCCAGTGGTAGTGTCAATTGGCTTAGTTTATCATTTTTAACTC
TTCATTTCCATCGTAGTCTCTAGAGAAATGGAAACAAACTATTGTCTACCTACTCCACCAACACA
CTATTCCACAGTATCAATACAATGGCTATCCTACAAATCTTCCTCCATCGCGAGATCTCCCCTAC
TTCTTTACCCCACCATCCCCACCCACCCATCTACCATGTACCACC
Right flanking sequence: Indices 16309 -- 16808
TCTCTCCCATCACTCCCCTTCCCTCTTCCCCTCTCTTTTCCTACCTCCCACACCCACCCTGCACT
CCCGCGAAGGGCATCGCGCCAAATCCACGCGCACCGCACCCAGGCACACCATGGCAGGCGTGAGC
ACATACATCGAGGACACCGTCTACGCCAACGTCATCGCCAAGGCCGGCCGCAACGAGCTCCAGCT
CGGCCGCCTCGCCGACGACGGCACGTTGGCCCCCGCCTCCCACAAGTTCGAGCTCCTGGCCGAGG
AAACGGTCTCGGACGGGGCATGGGTGGCGGCCCCGCCGCTGAAGAAGAAGCGCTCGCGCGACCCC
AACGCCTCCCCCTCTTCCTCCTCCTCCTCCTCCGCCCGGGTCTTCTGTGCGGTGTTGCCCACCCA
CGTCGCCGCGTTCGACACGGGGGCCCCGCGCCCGGTGGTGGCCGGCGCCTTCGCCGCGGTGGCCG
CGGGCAACGGCTCCGTGTGGGCGGCGCTGGCGGAGCGCGTCGAGG
Found at i:18069 original size:11 final size:12
Alignment explanation
Indices: 18020--18073 Score: 92
Period size: 12 Copynumber: 4.6 Consensus size: 12
18010 GCTCAGAGGC
18020 CATTGCTTAAAG
1 CATTGCTTAAAG
18032 CATTGCTTAAAG
1 CATTGCTTAAAG
*
18044 TATTGCTTAAAG
1 CATTGCTTAAAG
18056 CATTGCTT-AAG
1 CATTGCTTAAAG
18067 CATTGCT
1 CATTGCT
18074 GATAAACCAT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
11 10 0.25
12 30 0.75
ACGTcount: A:0.30, C:0.17, G:0.17, T:0.37
Consensus pattern (12 bp):
CATTGCTTAAAG
Left flanking sequence: Indices 17520 -- 18019
TGCTCCACCGGGCCCTCGTGGACGCCTTGGCCCAGGAGGACCCGGACGCGGTGTTGGTGTTGTGC
AGTGCCACCACCGACGACGACACCATCAAGCACACCGTCAAGTTGTTCCACACCGAGGCCCTGCC
GTTGTTTGTGGTGGTGGCGGACGAGGTGGCGCTGGACCCGCTGGCGCTGCTGCTGGTGCTGCTGT
GGCTCCGGTGGCTCCTCTTGCTCCACGGGCTGGCGCTCGCGGGGGACCCGCTGGTGATGGAGCCG
CTCCGGCGGCTCGAGAGCCAGTTGGGCGAGGGGATGAAGGTGCTCAAGCACTTGTTGGCGCTCCA
GGGACGGCTCCAGTTGCTCAAGAGCCAGGGGTCGTTGCGCAAGCTTGGCGGGGACAGCGACGACG
ACGAGGAGCCCGAGGAGCACGACGAGCCCGCGGTGGTGTTTGCCAACGGCGAGACGGACGATGCA
TAGAAGTTGGTGAGCCAAGTGGGCCTTTAAGCTGAGCTCAGAGGC
Right flanking sequence: Indices 18074 -- 18573
GATAAACCATGCTAATTCGAACCATTGCTAATCCTTGGACCCTATTCCTACAACTCGGCTCAGAG
CCAAGACGGGTATCCACTGTACATACCATCATAGAATAGTCATTGAATAATTACGGAAAGGTTGT
AGAGGGTGTGGTTGGTGGGAATTTACACACCATCAACATTATGAATAAACTTTATCTGATTCGCC
ATAGGTTGACTATGTAATTTGTCCAGTGCTTCAATGCCTTATTTTACCTTCTTCAGTACTCGTGG
TTTATTTTTAACCCGTGGTTTGTTTTTAACCCGTGGTTTGTTTTAAAAGAGCTTTCATGAATGTT
TTAAAATCATTCGTGGGTTTATCTAGAAATTTCTTCGTGGTTGTGGTGTGTTTTAAAATTAACTC
AAGGTTTGTTTTAGAATCCTTCGTGGTTGTTGTAGAATCCTTCGTGGTTGTTTTAAAATCCTTCG
TGGTTGTTTTGAAACCCTCCGTGATTGTTTTAAAATCTTCGTGGC
Found at i:18352 original size:18 final size:18
Alignment explanation
Indices: 18329--18377 Score: 89
Period size: 18 Copynumber: 2.7 Consensus size: 18
18319 CTTCAGTACT
*
18329 CGTGGTTTATTTTTAACC
1 CGTGGTTTGTTTTTAACC
18347 CGTGGTTTGTTTTTAACC
1 CGTGGTTTGTTTTTAACC
18365 CGTGGTTTGTTTT
1 CGTGGTTTGTTTT
18378 AAAAGAGCTT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
18 30 1.00
ACGTcount: A:0.10, C:0.14, G:0.22, T:0.53
Consensus pattern (18 bp):
CGTGGTTTGTTTTTAACC
Left flanking sequence: Indices 17829 -- 18328
ACTTGTTGGCGCTCCAGGGACGGCTCCAGTTGCTCAAGAGCCAGGGGTCGTTGCGCAAGCTTGGC
GGGGACAGCGACGACGACGAGGAGCCCGAGGAGCACGACGAGCCCGCGGTGGTGTTTGCCAACGG
CGAGACGGACGATGCATAGAAGTTGGTGAGCCAAGTGGGCCTTTAAGCTGAGCTCAGAGGCCATT
GCTTAAAGCATTGCTTAAAGTATTGCTTAAAGCATTGCTTAAGCATTGCTGATAAACCATGCTAA
TTCGAACCATTGCTAATCCTTGGACCCTATTCCTACAACTCGGCTCAGAGCCAAGACGGGTATCC
ACTGTACATACCATCATAGAATAGTCATTGAATAATTACGGAAAGGTTGTAGAGGGTGTGGTTGG
TGGGAATTTACACACCATCAACATTATGAATAAACTTTATCTGATTCGCCATAGGTTGACTATGT
AATTTGTCCAGTGCTTCAATGCCTTATTTTACCTTCTTCAGTACT
Right flanking sequence: Indices 18378 -- 18877
AAAAGAGCTTTCATGAATGTTTTAAAATCATTCGTGGGTTTATCTAGAAATTTCTTCGTGGTTGT
GGTGTGTTTTAAAATTAACTCAAGGTTTGTTTTAGAATCCTTCGTGGTTGTTGTAGAATCCTTCG
TGGTTGTTTTAAAATCCTTCGTGGTTGTTTTGAAACCCTCCGTGATTGTTTTAAAATCTTCGTGG
CTTATTTGTTTTTTATTATCCTTCGTGATTTGTTCAAAATGGTTCGTGTTTATCAAATTCCTTTC
CAACCATCGATCTAGCATGAAACCTCGGTTATTGGATCTTCGTTTTCTTATTACGTCCCATTGGA
TCTTCGTTTTCTTTCATCGCCATTGGATCTTCGTTACGTCGCCATTGGATCTTCGCTTTTAGCAC
GTCTTTAGCTGGTTTCAGTCCACTCAGTCACCACCGTCCAAACGGTTTCAACGGTGAATGTCCAG
CCTAATCGTTAGTCGATGGCAATGGACTCGTGTCGACGCCAACTA
Found at i:18499 original size:21 final size:21
Alignment explanation
Indices: 18469--18572 Score: 131
Period size: 21 Copynumber: 5.0 Consensus size: 21
18459 AACTCAAGGT
18469 TTGTTTTAGAATCCTTCGTGG
1 TTGTTTTAGAATCCTTCGTGG
*
18490 TTGTTGTAGAATCCTTCGTGG
1 TTGTTTTAGAATCCTTCGTGG
*
18511 TTGTTTTAAAATCCTTCGTGG
1 TTGTTTTAGAATCCTTCGTGG
* * *
18532 TTGTTTT-GAAACCCTCCGTGA
1 TTGTTTTAG-AATCCTTCGTGG
*
18553 TTGTTTTAAAAT-CTTCGTGG
1 TTGTTTTAGAATCCTTCGTGG
18573 CTTATTTGTT
Statistics
Matches: 70, Mismatches: 11, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
20 6 0.09
21 64 0.91
ACGTcount: A:0.17, C:0.15, G:0.22, T:0.45
Consensus pattern (21 bp):
TTGTTTTAGAATCCTTCGTGG
Left flanking sequence: Indices 17969 -- 18468
GATGCATAGAAGTTGGTGAGCCAAGTGGGCCTTTAAGCTGAGCTCAGAGGCCATTGCTTAAAGCA
TTGCTTAAAGTATTGCTTAAAGCATTGCTTAAGCATTGCTGATAAACCATGCTAATTCGAACCAT
TGCTAATCCTTGGACCCTATTCCTACAACTCGGCTCAGAGCCAAGACGGGTATCCACTGTACATA
CCATCATAGAATAGTCATTGAATAATTACGGAAAGGTTGTAGAGGGTGTGGTTGGTGGGAATTTA
CACACCATCAACATTATGAATAAACTTTATCTGATTCGCCATAGGTTGACTATGTAATTTGTCCA
GTGCTTCAATGCCTTATTTTACCTTCTTCAGTACTCGTGGTTTATTTTTAACCCGTGGTTTGTTT
TTAACCCGTGGTTTGTTTTAAAAGAGCTTTCATGAATGTTTTAAAATCATTCGTGGGTTTATCTA
GAAATTTCTTCGTGGTTGTGGTGTGTTTTAAAATTAACTCAAGGT
Right flanking sequence: Indices 18573 -- 19072
CTTATTTGTTTTTTATTATCCTTCGTGATTTGTTCAAAATGGTTCGTGTTTATCAAATTCCTTTC
CAACCATCGATCTAGCATGAAACCTCGGTTATTGGATCTTCGTTTTCTTATTACGTCCCATTGGA
TCTTCGTTTTCTTTCATCGCCATTGGATCTTCGTTACGTCGCCATTGGATCTTCGCTTTTAGCAC
GTCTTTAGCTGGTTTCAGTCCACTCAGTCACCACCGTCCAAACGGTTTCAACGGTGAATGTCCAG
CCTAATCGTTAGTCGATGGCAATGGACTCGTGTCGACGCCAACTAATGCATTCTCAGGTCACTTT
CGTCCAGTGTCTGAGAAGCGTGCCCACATTCTATACTCAAAACGGCAGTTCCATCCTGGAGCTCT
GACTGCCTCTTACGTTTCCGGCCTGGCGATCCGTCTGTCTGCTGAAAAATAAATACGAGTAGCTA
GGGCATCTGTACCACCGCTGTCCACCGATAATTCTTTGTCTTTAG
Found at i:18733 original size:27 final size:28
Alignment explanation
Indices: 18668--18737 Score: 99
Period size: 29 Copynumber: 2.5 Consensus size: 28
18658 AACCTCGGTT
*
18668 ATTGGATCTTCGTTTTCTTATTACGTCCC
1 ATTGGATCTTCGTTTTCTTATCACG-CCC
18697 ATTGGATCTTCGTTTTCTT-TCATCG-CC
1 ATTGGATCTTCGTTTTCTTATCA-CGCCC
18724 ATTGGATCTTCGTT
1 ATTGGATCTTCGTT
18738 ACGTCGCCAT
Statistics
Matches: 39, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
27 16 0.41
28 2 0.05
29 21 0.54
ACGTcount: A:0.13, C:0.23, G:0.16, T:0.49
Consensus pattern (28 bp):
ATTGGATCTTCGTTTTCTTATCACGCCC
Left flanking sequence: Indices 18168 -- 18667
CATAGAATAGTCATTGAATAATTACGGAAAGGTTGTAGAGGGTGTGGTTGGTGGGAATTTACACA
CCATCAACATTATGAATAAACTTTATCTGATTCGCCATAGGTTGACTATGTAATTTGTCCAGTGC
TTCAATGCCTTATTTTACCTTCTTCAGTACTCGTGGTTTATTTTTAACCCGTGGTTTGTTTTTAA
CCCGTGGTTTGTTTTAAAAGAGCTTTCATGAATGTTTTAAAATCATTCGTGGGTTTATCTAGAAA
TTTCTTCGTGGTTGTGGTGTGTTTTAAAATTAACTCAAGGTTTGTTTTAGAATCCTTCGTGGTTG
TTGTAGAATCCTTCGTGGTTGTTTTAAAATCCTTCGTGGTTGTTTTGAAACCCTCCGTGATTGTT
TTAAAATCTTCGTGGCTTATTTGTTTTTTATTATCCTTCGTGATTTGTTCAAAATGGTTCGTGTT
TATCAAATTCCTTTCCAACCATCGATCTAGCATGAAACCTCGGTT
Right flanking sequence: Indices 18738 -- 19237
ACGTCGCCATTGGATCTTCGCTTTTAGCACGTCTTTAGCTGGTTTCAGTCCACTCAGTCACCACC
GTCCAAACGGTTTCAACGGTGAATGTCCAGCCTAATCGTTAGTCGATGGCAATGGACTCGTGTCG
ACGCCAACTAATGCATTCTCAGGTCACTTTCGTCCAGTGTCTGAGAAGCGTGCCCACATTCTATA
CTCAAAACGGCAGTTCCATCCTGGAGCTCTGACTGCCTCTTACGTTTCCGGCCTGGCGATCCGTC
TGTCTGCTGAAAAATAAATACGAGTAGCTAGGGCATCTGTACCACCGCTGTCCACCGATAATTCT
TTGTCTTTAGTGGGTGTTTCGGTATTTCGGCCTGAATGCCCCATAATCGACTTCCCCCACGTCCA
CCTCTTTACTTCGTATCCCAACCATCTTTTGCAGCCACCATCTCGGCCGTTATACATCAACCATT
ATTTTATTCCAACCATCTTCCTTCTTTCGTATTGTTCGTTTCCAT
Found at i:23080 original size:10 final size:10
Alignment explanation
Indices: 23065--23112 Score: 78
Period size: 10 Copynumber: 4.8 Consensus size: 10
23055 GAGGGGTTTG
*
23065 GAGAGGTCTC
1 GAGAGGTCGC
23075 GAGAGGTCGC
1 GAGAGGTCGC
*
23085 AAGAGGTCGC
1 GAGAGGTCGC
23095 GAGAGGTCGC
1 GAGAGGTCGC
23105 GAGAGGTC
1 GAGAGGTC
23113 TCGCTAAGTA
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
10 35 1.00
ACGTcount: A:0.23, C:0.19, G:0.46, T:0.12
Consensus pattern (10 bp):
GAGAGGTCGC
Left flanking sequence: Indices 22565 -- 23064
AAGGACAATCGCACGGTTCTATCCAACTCTATCTGCCCACCAACCCTAACCCAATCACCACTAAA
AAGCCAATCACGGCCACAAACGCAACCAAACCCCGGTCCTGGTTAGCGAGTGCCCCTGCGAGCCC
CTAAATGGGTAGCACAGGTTTTGCGGTTAGAAGCTTTGGTGGGTGTAATTACAAACGATCCCCCA
AATGACATAATTATCATTGTTAATCGATCAACAACTACTGTAGCACCTAGCCAGGTAGCAAGTGC
ACCCGATAACGGGAACGCAAACAAAGGCAGTCCCCGAAACAATGGCGATGTCGGACAAAACGGGG
ACAATAGTAGGAGACGCCCACAAACGGCCATGCCAACTTAATAAGATTTTAGTAGTGGATTGGCG
TCGTGTCACGATAAGCGTTGGGTGCAGCTGTCAAGGGGGTGACGTGGTGACAGTAGTCAGGCACC
CGGCTACGGAGTAAGGCTCGTTAGAGAGAGAAAGCGAGGGGTTTG
Right flanking sequence: Indices 23113 -- 23612
TCGCTAAGTATTACCGTATGTGGCGGGCCACAAGTGGGTGGTGGCCAGAGAAGGAGTGCAGTGGC
GAGGGACAAACAAGGATTACACAGGGGCAGAGGGGACATTTCGTGAAATAGGGGCACCCGTGCCT
TTGGGAGGATACCGTAAAGGTTAAAGTAGGTTAAAGTGTCAATCCTGGAATTGATGGGTACTCCT
GTTGAGCAACCTTCCGTCTTGAGTAACCCCTTCTTATGCAACGATTTGCGGATCGACATGTTGAC
AGAGGGATAAGAGGGGTCTGCCAAGTCAAACCATTCCCAGCCCATCAGGTTGTATAACTACCTCC
CAGTGGGTATTGCCCGGGATGAGTACACGTGACGTCATTCACGGGAAGACTTTCACGTGACTAAC
TTCACACATCAATACTCACGTTACATCAATACTCACGTTACATTACGAACCCAAGTGTCACGTGA
CATTTCACTTCCAATACATATCAATTCCTCAATCCTCACCACTTC
Found at i:23530 original size:17 final size:17
Alignment explanation
Indices: 23508--23545 Score: 76
Period size: 17 Copynumber: 2.2 Consensus size: 17
23498 CTAACTTCAC
23508 ACATCAATACTCACGTT
1 ACATCAATACTCACGTT
23525 ACATCAATACTCACGTT
1 ACATCAATACTCACGTT
23542 ACAT
1 ACAT
23546 TACGAACCCA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.37, C:0.29, G:0.05, T:0.29
Consensus pattern (17 bp):
ACATCAATACTCACGTT
Left flanking sequence: Indices 23008 -- 23507
TAGTCAGGCACCCGGCTACGGAGTAAGGCTCGTTAGAGAGAGAAAGCGAGGGGTTTGGAGAGGTC
TCGAGAGGTCGCAAGAGGTCGCGAGAGGTCGCGAGAGGTCTCGCTAAGTATTACCGTATGTGGCG
GGCCACAAGTGGGTGGTGGCCAGAGAAGGAGTGCAGTGGCGAGGGACAAACAAGGATTACACAGG
GGCAGAGGGGACATTTCGTGAAATAGGGGCACCCGTGCCTTTGGGAGGATACCGTAAAGGTTAAA
GTAGGTTAAAGTGTCAATCCTGGAATTGATGGGTACTCCTGTTGAGCAACCTTCCGTCTTGAGTA
ACCCCTTCTTATGCAACGATTTGCGGATCGACATGTTGACAGAGGGATAAGAGGGGTCTGCCAAG
TCAAACCATTCCCAGCCCATCAGGTTGTATAACTACCTCCCAGTGGGTATTGCCCGGGATGAGTA
CACGTGACGTCATTCACGGGAAGACTTTCACGTGACTAACTTCAC
Right flanking sequence: Indices 23546 -- 24045
TACGAACCCAAGTGTCACGTGACATTTCACTTCCAATACATATCAATTCCTCAATCCTCACCACT
TCATGTGACTTGAGCTCACGTGCACAGCCCCAACCGTTTGACACCGTTTGACATCACCTATCCAA
ACCCACTCCCCCACTTCCCCACTCCCCACTCCTACATTCATCATTATCTTATCATCTATTTTTCA
CATTCTATTCGTTAGTCATTCAAAAGAGGCCCAGCTTCAACTCGGCAAACATCAGCGACACCTTG
GTCTCCATGTCGGCAATCGTCTCCTTCAACGACTTGCCGGAGGTGGTCTCTTCCTCGCCCCAGAA
ATCCGTCAAGTTGTGGCCAGCACCGTTGAAAATGAGGATGTTGGGGGTCCCGTCCTGGGGAATGT
CCGACAACAAGTTCTTGGACCCGTAGGCAATCAAGTTCTTCTTGAGCTGCTTGGGCGTCACCGAG
TTCTCGGCGTAGAACTCCAGGCCCTTGCCGGGCTGGAGCGACAAG
Found at i:25982 original size:12 final size:12
Alignment explanation
Indices: 25965--26000 Score: 58
Period size: 12 Copynumber: 3.2 Consensus size: 12
25955 CCGTATAGAG
25965 GGGCCACAAACC
1 GGGCCACAAACC
25977 GGGCCACAAACC
1 GGGCCACAAACC
25989 --GCCACAAACC
1 GGGCCACAAACC
25999 GG
1 GG
26001 TAAGGGCTTA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
10 10 0.45
12 12 0.55
ACGTcount: A:0.33, C:0.42, G:0.25, T:0.00
Consensus pattern (12 bp):
GGGCCACAAACC
Left flanking sequence: Indices 25465 -- 25964
GGGCGGTTTTGGCGGGCTCTGGTTTTGCGGGCGGCCGTGGCTCGTTTCGTGGCCACTTGCTATGG
CTGTCTCACCTGCACACAGCCTGTGTGGAGCCCGAACCGGTGTAGTGGTGGCACATAGCAACGGT
AAACAAAGGAGCTATCGGACCGCGACGGAGCCCCGCACTGGGTGGACACAGAGTCGTTTCAATGG
GTTCCACTCTGTGGCCACGGGGTGGGCGGGCGGCCCTCGCGCGCGCAACGCGTGGGCCTGGCTGG
ATGACCGAACTCGCTCTTGGTGGTTATGATGTCACCGCGCGCTATCGCCCGCCACAACGATAGAC
AAGGTGATAAGGGTAGGGGTCGGGCGTAAGGAGATCGGGGCGTGTGACACCCGGGGAACGCTGGC
GGGACCTTGGTGGTTGATGGGAGCACCTAACTTACGTCTTCCGAGGCGATACGAAAAAGAAATGG
GCCCAACGTCTCGTGAGCCTAACGAGGCTGGGTCCCCGTATAGAG
Right flanking sequence: Indices 26001 -- 26500
TAAGGGCTTAGGGTCGGCTCCAACGGGTGGGTGTTGGTGTGTATTTGTGGACGTGTGTTTGTGGA
CGTGTGTTGTGTGTACGTGGCTATATATACCTTGAACCACCCAGTCGTTCAATTTGCTCGCTCAA
TCTCTTGGCTGTCCTTGCTTTTCGTTATCCTTGTTCTTTCTTGCAGCCGGTGATAACGGTGCGGT
GGGGAAGGATGACTAAGTGGGCTAATCACGGGCTAATCACGGGCTATTTGCCGGCTCCCCGCGAG
CTCCCCGCGGGCAAAATAGACGAACAAGGCAGAGCACGGCAGCATTAACGAAGGTCTTCGCTGGC
GCAACTGTCCTTCGGGATCACCCGAGATGGATCGTCACTCGTAACGTGATCTGGCCAGTCTGAGA
CACGCCAGGTGCCACCTGAGACAGGCCAAGACCACCGCCACCGGCCCGCCTGAGCGTCGTAGCGA
CCATTCAGTAGTGTTGTTAGCCCCGAAACAATGATCCTTGGCCAT
Found at i:26061 original size:14 final size:14
Alignment explanation
Indices: 26039--26084 Score: 65
Period size: 14 Copynumber: 3.2 Consensus size: 14
26029 GGGTGTTGGT
*
26039 GTGTATTTGTGGAC
1 GTGTGTTTGTGGAC
26053 GTGTGTTTGTGGAC
1 GTGTGTTTGTGGAC
*
26067 GTGTGTTGTGTGTAC
1 GTGTGTT-TGTGGAC
26082 GTG
1 GTG
26085 GCTATATATA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
14 20 0.69
15 9 0.31
ACGTcount: A:0.09, C:0.07, G:0.41, T:0.43
Consensus pattern (14 bp):
GTGTGTTTGTGGAC
Left flanking sequence: Indices 25539 -- 26038
CTGCACACAGCCTGTGTGGAGCCCGAACCGGTGTAGTGGTGGCACATAGCAACGGTAAACAAAGG
AGCTATCGGACCGCGACGGAGCCCCGCACTGGGTGGACACAGAGTCGTTTCAATGGGTTCCACTC
TGTGGCCACGGGGTGGGCGGGCGGCCCTCGCGCGCGCAACGCGTGGGCCTGGCTGGATGACCGAA
CTCGCTCTTGGTGGTTATGATGTCACCGCGCGCTATCGCCCGCCACAACGATAGACAAGGTGATA
AGGGTAGGGGTCGGGCGTAAGGAGATCGGGGCGTGTGACACCCGGGGAACGCTGGCGGGACCTTG
GTGGTTGATGGGAGCACCTAACTTACGTCTTCCGAGGCGATACGAAAAAGAAATGGGCCCAACGT
CTCGTGAGCCTAACGAGGCTGGGTCCCCGTATAGAGGGGCCACAAACCGGGCCACAAACCGCCAC
AAACCGGTAAGGGCTTAGGGTCGGCTCCAACGGGTGGGTGTTGGT
Right flanking sequence: Indices 26085 -- 26584
GCTATATATACCTTGAACCACCCAGTCGTTCAATTTGCTCGCTCAATCTCTTGGCTGTCCTTGCT
TTTCGTTATCCTTGTTCTTTCTTGCAGCCGGTGATAACGGTGCGGTGGGGAAGGATGACTAAGTG
GGCTAATCACGGGCTAATCACGGGCTATTTGCCGGCTCCCCGCGAGCTCCCCGCGGGCAAAATAG
ACGAACAAGGCAGAGCACGGCAGCATTAACGAAGGTCTTCGCTGGCGCAACTGTCCTTCGGGATC
ACCCGAGATGGATCGTCACTCGTAACGTGATCTGGCCAGTCTGAGACACGCCAGGTGCCACCTGA
GACAGGCCAAGACCACCGCCACCGGCCCGCCTGAGCGTCGTAGCGACCATTCAGTAGTGTTGTTA
GCCCCGAAACAATGATCCTTGGCCATTGTTCTCGCCCGGCCCCTGTTCTATAACCGTCCTCGAGC
CTCGTCTCTCGAGCCTCGTTCTCGAGCCTCGTCTCCTTCCCCACA
Found at i:26230 original size:11 final size:11
Alignment explanation
Indices: 26214--26241 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
26204 ATGACTAAGT
26214 GGGCTAATCAC
1 GGGCTAATCAC
26225 GGGCTAATCAC
1 GGGCTAATCAC
26236 GGGCTA
1 GGGCTA
26242 TTTGCCGGCT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.25, C:0.25, G:0.32, T:0.18
Consensus pattern (11 bp):
GGGCTAATCAC
Left flanking sequence: Indices 25714 -- 26213
GGCCTGGCTGGATGACCGAACTCGCTCTTGGTGGTTATGATGTCACCGCGCGCTATCGCCCGCCA
CAACGATAGACAAGGTGATAAGGGTAGGGGTCGGGCGTAAGGAGATCGGGGCGTGTGACACCCGG
GGAACGCTGGCGGGACCTTGGTGGTTGATGGGAGCACCTAACTTACGTCTTCCGAGGCGATACGA
AAAAGAAATGGGCCCAACGTCTCGTGAGCCTAACGAGGCTGGGTCCCCGTATAGAGGGGCCACAA
ACCGGGCCACAAACCGCCACAAACCGGTAAGGGCTTAGGGTCGGCTCCAACGGGTGGGTGTTGGT
GTGTATTTGTGGACGTGTGTTTGTGGACGTGTGTTGTGTGTACGTGGCTATATATACCTTGAACC
ACCCAGTCGTTCAATTTGCTCGCTCAATCTCTTGGCTGTCCTTGCTTTTCGTTATCCTTGTTCTT
TCTTGCAGCCGGTGATAACGGTGCGGTGGGGAAGGATGACTAAGT
Right flanking sequence: Indices 26242 -- 26741
TTTGCCGGCTCCCCGCGAGCTCCCCGCGGGCAAAATAGACGAACAAGGCAGAGCACGGCAGCATT
AACGAAGGTCTTCGCTGGCGCAACTGTCCTTCGGGATCACCCGAGATGGATCGTCACTCGTAACG
TGATCTGGCCAGTCTGAGACACGCCAGGTGCCACCTGAGACAGGCCAAGACCACCGCCACCGGCC
CGCCTGAGCGTCGTAGCGACCATTCAGTAGTGTTGTTAGCCCCGAAACAATGATCCTTGGCCATT
GTTCTCGCCCGGCCCCTGTTCTATAACCGTCCTCGAGCCTCGTCTCTCGAGCCTCGTTCTCGAGC
CTCGTCTCCTTCCCCACAGTCACTAGTATACGAGCCACTGCTGATCCACCCTGCTACCACCGGCT
CCACCCTGCTACCACAGTCTCCCCACCGCCCACACGCTCCCCTACAACTATTAATAGTCACACTG
ATAGTCACGAACCACCGCCGTCTTACGAACGGCCACGGCCCGCCT
Found at i:26562 original size:13 final size:14
Alignment explanation
Indices: 26529--26574 Score: 78
Period size: 13 Copynumber: 3.4 Consensus size: 14
26519 GTTCTATAAC
26529 CGTC-CTCGAGCCT
1 CGTCTCTCGAGCCT
26542 CGTCTCTCGAGCCT
1 CGTCTCTCGAGCCT
26556 CGT-TCTCGAGCCT
1 CGTCTCTCGAGCCT
26569 CGTCTC
1 CGTCTC
26575 CTTCCCCACA
Statistics
Matches: 31, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
13 17 0.55
14 14 0.45
ACGTcount: A:0.07, C:0.43, G:0.22, T:0.28
Consensus pattern (14 bp):
CGTCTCTCGAGCCT
Left flanking sequence: Indices 26029 -- 26528
GGGTGTTGGTGTGTATTTGTGGACGTGTGTTTGTGGACGTGTGTTGTGTGTACGTGGCTATATAT
ACCTTGAACCACCCAGTCGTTCAATTTGCTCGCTCAATCTCTTGGCTGTCCTTGCTTTTCGTTAT
CCTTGTTCTTTCTTGCAGCCGGTGATAACGGTGCGGTGGGGAAGGATGACTAAGTGGGCTAATCA
CGGGCTAATCACGGGCTATTTGCCGGCTCCCCGCGAGCTCCCCGCGGGCAAAATAGACGAACAAG
GCAGAGCACGGCAGCATTAACGAAGGTCTTCGCTGGCGCAACTGTCCTTCGGGATCACCCGAGAT
GGATCGTCACTCGTAACGTGATCTGGCCAGTCTGAGACACGCCAGGTGCCACCTGAGACAGGCCA
AGACCACCGCCACCGGCCCGCCTGAGCGTCGTAGCGACCATTCAGTAGTGTTGTTAGCCCCGAAA
CAATGATCCTTGGCCATTGTTCTCGCCCGGCCCCTGTTCTATAAC
Right flanking sequence: Indices 26575 -- 27074
CTTCCCCACAGTCACTAGTATACGAGCCACTGCTGATCCACCCTGCTACCACCGGCTCCACCCTG
CTACCACAGTCTCCCCACCGCCCACACGCTCCCCTACAACTATTAATAGTCACACTGATAGTCAC
GAACCACCGCCGTCTTACGAACGGCCACGGCCCGCCTGTAACCGTTCCGGCTCGCTCGGGGTCGC
GCACCACCCAGTCTAGCCCCTTGTTCGCCTGACCCCGACTGAAACACCGTCGTTTCTGACAAATC
CGTAAACAACCCCTCCAACTACAACCCACTCTACAGCACCCACTCTACCCACTCTACCCCTTCAA
CCCCTCCACCCAGTCACCCCACACCCCCGCCCCCCACCACCCACCAACCATCACCTTATCGCACC
TATTTCTTTTGTCTCAGCCGCGGGCCATCACCCGCGTTGCGAGCCCGCGCCGCTCCGCCAAGCGT
GTTCTTTTTATTCCTTTTTGCTTCTTTTCGCGTCTGCATTAATTT
Found at i:26653 original size:20 final size:20
Alignment explanation
Indices: 26611--26653 Score: 68
Period size: 20 Copynumber: 2.1 Consensus size: 20
26601 CCACTGCTGA
*
26611 TCCACCCTGCTACCACCGGC
1 TCCACCCTGCTACCACAGGC
*
26631 TCCACCCTGCTACCACAGTC
1 TCCACCCTGCTACCACAGGC
26651 TCC
1 TCC
26654 CCACCGCCCA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.16, C:0.53, G:0.12, T:0.19
Consensus pattern (20 bp):
TCCACCCTGCTACCACAGGC
Left flanking sequence: Indices 26111 -- 26610
CGTTCAATTTGCTCGCTCAATCTCTTGGCTGTCCTTGCTTTTCGTTATCCTTGTTCTTTCTTGCA
GCCGGTGATAACGGTGCGGTGGGGAAGGATGACTAAGTGGGCTAATCACGGGCTAATCACGGGCT
ATTTGCCGGCTCCCCGCGAGCTCCCCGCGGGCAAAATAGACGAACAAGGCAGAGCACGGCAGCAT
TAACGAAGGTCTTCGCTGGCGCAACTGTCCTTCGGGATCACCCGAGATGGATCGTCACTCGTAAC
GTGATCTGGCCAGTCTGAGACACGCCAGGTGCCACCTGAGACAGGCCAAGACCACCGCCACCGGC
CCGCCTGAGCGTCGTAGCGACCATTCAGTAGTGTTGTTAGCCCCGAAACAATGATCCTTGGCCAT
TGTTCTCGCCCGGCCCCTGTTCTATAACCGTCCTCGAGCCTCGTCTCTCGAGCCTCGTTCTCGAG
CCTCGTCTCCTTCCCCACAGTCACTAGTATACGAGCCACTGCTGA
Right flanking sequence: Indices 26654 -- 27153
CCACCGCCCACACGCTCCCCTACAACTATTAATAGTCACACTGATAGTCACGAACCACCGCCGTC
TTACGAACGGCCACGGCCCGCCTGTAACCGTTCCGGCTCGCTCGGGGTCGCGCACCACCCAGTCT
AGCCCCTTGTTCGCCTGACCCCGACTGAAACACCGTCGTTTCTGACAAATCCGTAAACAACCCCT
CCAACTACAACCCACTCTACAGCACCCACTCTACCCACTCTACCCCTTCAACCCCTCCACCCAGT
CACCCCACACCCCCGCCCCCCACCACCCACCAACCATCACCTTATCGCACCTATTTCTTTTGTCT
CAGCCGCGGGCCATCACCCGCGTTGCGAGCCCGCGCCGCTCCGCCAAGCGTGTTCTTTTTATTCC
TTTTTGCTTCTTTTCGCGTCTGCATTAATTTCTTTCTGGTCTCGTGCAGCGAACCACCGTAGCGC
TGGAGCGGTAGTGCCCACCCCCGGCCCGCCCGCTCGCCAATTCGC
Found at i:29176 original size:12 final size:12
Alignment explanation
Indices: 29159--29208 Score: 55
Period size: 12 Copynumber: 3.9 Consensus size: 12
29149 TCAGACGTTC
*
29159 CGGCGGTGGCTA
1 CGGCGGCGGCTA
29171 CGGCGGCGGCTA
1 CGGCGGCGGCTA
*
29183 CGGCGGCTCCAGCTA
1 CGGCGG---CGGCTA
29198 CGGCGGCGGCT
1 CGGCGGCGGCT
29209 CGTCGTGGGG
Statistics
Matches: 32, Mismatches: 3, Indels: 6
0.78 0.07 0.15
Matches are distributed among these distances:
12 21 0.66
15 11 0.34
ACGTcount: A:0.08, C:0.34, G:0.46, T:0.12
Consensus pattern (12 bp):
CGGCGGCGGCTA
Left flanking sequence: Indices 28659 -- 29158
ATTTTGCTGGCGGCCGAGCAGGGCTTGACCATTGTGTTCACCGAGACCAAGCGGATGGCTGACAA
CTTGGCGGACTACCTCTACGACCAGGGGATCCCCGCCACCGCGATTCACGGTGACCGTTCGCAGT
ACGAGCGTGAAAAGGCGCTTGCCCAGTTTAAGAGCGGCCAGGCCCCGATTTTGGTGGCCACCGCC
GTTGCGGCGCGTGGGTTGGACATTCCCAACGTCTCCCACGTCATCAACTACGACTTGCCGCTGGA
CATTGACGACTACGTCCACCGGATCGGTCGTACCGGGCGTGCCGGTAACACCGGTACCGCCACTG
CGTTCTTCAACCGCAACAACAAGTCGGTGGTCAAGGGCCTTGTCGAGCTTTTGACCGAGGCCAAC
CAGGAGGTGCCCGACTTTTTGACCCGGGTTGCCCGCGAGTCCTCGTACGGCAGAGGCCCCTCGCG
CGGCCGCGGCGGCGGCAGAGGCCCCGCCCGCGACTTCAGACGTTC
Right flanking sequence: Indices 29209 -- 29708
CGTCGTGGGGCTCGTCGGGCTCCTCCGGCTCCTCGTGGGGCGCTTCGCGCGGCTCCGGGTTCTCG
TCCAGCTACGGCAACCAGAACTCGTCCGGGCTGTGGTGGTAAGCCACACTGCATGATTGATTTTG
CTCGAGTGGGGGGAAAACCATCGGTTTCCGACACCTTTTCGACTGGCTTTTTCTTTTGAAACCAT
GATTGTTGAGGCAATTAAAAGTTATTTGGATTTTTGGGATAAGAAAAGGCATGCTTATAGAAAGG
GTTTTGGGTTTTATTTGATTTGTACCGGTTTTGTCACATTTGGGTAGGTTTTTAATATAGTGAAA
CAAAAGTTATAAAACAAAGGAGTGTAGAGGCAATGGTCTTGGTACTAGAGGGGCAATGGCCTAGG
GAAAGTGGCCATGGTACTTGATCATATAGCCGTATAGTATTGGTGATTGTGGGCTGTCTAATGTA
ACCATATTGATCTTCACCGTTGATTGTGAGACCGTAGATTGACAC
Found at i:29265 original size:30 final size:30
Alignment explanation
Indices: 29204--29266 Score: 72
Period size: 30 Copynumber: 2.1 Consensus size: 30
29194 GCTACGGCGG
* * * *
29204 CGGCTCGTCGTGGGGCTCGTCGGGCTCCTC
1 CGGCTCCTCGTGGGGCGCGTCGCGCGCCTC
* *
29234 CGGCTCCTCGTGGGGCGCTTCGCGCGGCTC
1 CGGCTCCTCGTGGGGCGCGTCGCGCGCCTC
29264 CGG
1 CGG
29267 GTTCTCGTCC
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.00, C:0.38, G:0.41, T:0.21
Consensus pattern (30 bp):
CGGCTCCTCGTGGGGCGCGTCGCGCGCCTC
Left flanking sequence: Indices 28704 -- 29203
ACCAAGCGGATGGCTGACAACTTGGCGGACTACCTCTACGACCAGGGGATCCCCGCCACCGCGAT
TCACGGTGACCGTTCGCAGTACGAGCGTGAAAAGGCGCTTGCCCAGTTTAAGAGCGGCCAGGCCC
CGATTTTGGTGGCCACCGCCGTTGCGGCGCGTGGGTTGGACATTCCCAACGTCTCCCACGTCATC
AACTACGACTTGCCGCTGGACATTGACGACTACGTCCACCGGATCGGTCGTACCGGGCGTGCCGG
TAACACCGGTACCGCCACTGCGTTCTTCAACCGCAACAACAAGTCGGTGGTCAAGGGCCTTGTCG
AGCTTTTGACCGAGGCCAACCAGGAGGTGCCCGACTTTTTGACCCGGGTTGCCCGCGAGTCCTCG
TACGGCAGAGGCCCCTCGCGCGGCCGCGGCGGCGGCAGAGGCCCCGCCCGCGACTTCAGACGTTC
CGGCGGTGGCTACGGCGGCGGCTACGGCGGCTCCAGCTACGGCGG
Right flanking sequence: Indices 29267 -- 29766
GTTCTCGTCCAGCTACGGCAACCAGAACTCGTCCGGGCTGTGGTGGTAAGCCACACTGCATGATT
GATTTTGCTCGAGTGGGGGGAAAACCATCGGTTTCCGACACCTTTTCGACTGGCTTTTTCTTTTG
AAACCATGATTGTTGAGGCAATTAAAAGTTATTTGGATTTTTGGGATAAGAAAAGGCATGCTTAT
AGAAAGGGTTTTGGGTTTTATTTGATTTGTACCGGTTTTGTCACATTTGGGTAGGTTTTTAATAT
AGTGAAACAAAAGTTATAAAACAAAGGAGTGTAGAGGCAATGGTCTTGGTACTAGAGGGGCAATG
GCCTAGGGAAAGTGGCCATGGTACTTGATCATATAGCCGTATAGTATTGGTGATTGTGGGCTGTC
TAATGTAACCATATTGATCTTCACCGTTGATTGTGAGACCGTAGATTGACACCGTGGATTACGAA
CCGTAGATTTGACTCTGACTGGTTGGCCGTGTCCCGCAATACGTC
Found at i:29851 original size:13 final size:16
Alignment explanation
Indices: 29812--29870 Score: 109
Period size: 16 Copynumber: 3.7 Consensus size: 16
29802 CCTCCGTTTG
*
29812 TCCTCTCCTCCGTTCA
1 TCCTCTCCTCCGGTCA
29828 TCCTCTCCTCCGGTCA
1 TCCTCTCCTCCGGTCA
29844 TCCTCTCCTCCGGTCA
1 TCCTCTCCTCCGGTCA
29860 TCCTCTCCTCC
1 TCCTCTCCTCC
29871 TTCGTCTCCT
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
16 42 1.00
ACGTcount: A:0.05, C:0.53, G:0.08, T:0.34
Consensus pattern (16 bp):
TCCTCTCCTCCGGTCA
Left flanking sequence: Indices 29312 -- 29811
GTAAGCCACACTGCATGATTGATTTTGCTCGAGTGGGGGGAAAACCATCGGTTTCCGACACCTTT
TCGACTGGCTTTTTCTTTTGAAACCATGATTGTTGAGGCAATTAAAAGTTATTTGGATTTTTGGG
ATAAGAAAAGGCATGCTTATAGAAAGGGTTTTGGGTTTTATTTGATTTGTACCGGTTTTGTCACA
TTTGGGTAGGTTTTTAATATAGTGAAACAAAAGTTATAAAACAAAGGAGTGTAGAGGCAATGGTC
TTGGTACTAGAGGGGCAATGGCCTAGGGAAAGTGGCCATGGTACTTGATCATATAGCCGTATAGT
ATTGGTGATTGTGGGCTGTCTAATGTAACCATATTGATCTTCACCGTTGATTGTGAGACCGTAGA
TTGACACCGTGGATTACGAACCGTAGATTTGACTCTGACTGGTTGGCCGTGTCCCGCAATACGTC
ACCTGTAGAATTACCTCTTCTCCTCACTCGCTCCTCCTCCGTTTG
Right flanking sequence: Indices 29871 -- 30370
TTCGTCTCCTCCCATCTCGTTTTTCGCAGCTCATCGCGGCTATCAACGGACCTCCACGACAATGA
AGTTCGACACCTCCCACATGCGGTACCTCACCGCGGACGACTGGAAGGTCCTCCAGGGTGTGGAG
ATCGGGGCCCGCTCCCACGAGTTGGTGCCCACCCACATGATCCACAAGGAGGGCGGGATGCGTGC
CCCCTCCGCCACCAACCGGGCCATCGGAGACTTGGCCAAGCTCAACCTCGTGTCGCGGTTGCGGA
ACGCCAAGTACGACGGTTTCCGCCTCACCTACGCTGGCTACGACTACTTGGCCCTCAAACTGTTG
CTCAACCGCGACCTGGTGTACTCGGTGGGCAACCTGATCGGGGTAGGCAAGGAGCTGGACATCTA
CCAAGTGTCTGACAACCACGGCACCGCCAAGGCCCTCAAGATCCACCGGTTGGGCCGCACGTCGT
TCAAGACGGTCAAGAACAACCGCGACTACTTGCGCAACAACCAGT
Found at i:41726 original size:9 final size:9
Alignment explanation
Indices: 41712--41770 Score: 64
Period size: 9 Copynumber: 5.9 Consensus size: 9
41702 AGAGGAGGGT
41712 GGAAAGGAA
1 GGAAAGGAA
41721 GGAAAGGAGA
1 GGAAAGGA-A
41731 TCGGAAAGGAA
1 --GGAAAGGAA
41742 GGAAAGGAGA
1 GGAAAGGA-A
41752 TCGGAAAGGAA
1 --GGAAAGGAA
41763 GGAAAGGA
1 GGAAAGGA
41771 GGGTGAAAAG
Statistics
Matches: 44, Mismatches: 0, Indels: 12
0.79 0.00 0.21
Matches are distributed among these distances:
9 24 0.55
10 2 0.05
11 2 0.05
12 16 0.36
ACGTcount: A:0.49, C:0.03, G:0.44, T:0.03
Consensus pattern (9 bp):
GGAAAGGAA
Left flanking sequence: Indices 41212 -- 41711
CCTTGGAAGCGGATACAGACATGGTGATGGAGTACCTGAAAGTGAAAAATGTTTTATAGGTTGTG
CAGGAGGGCGTGAGCGAGGGAAGGGAGAAGAAGGCAATCGAAAAGGGTGGTGGTGGGGGGTTATG
GGGGTGGCTAGTAGGGTAAACGGGGTGGTTTAGGCGTGTTGGTGGCGCAGTTTTGCGCGATTTCG
CCGCGGGGAGCGCGGTACCCGGTGGTTGTCGTGGGTGGGATTGCGATGCCCCTGTGATGTCATAG
CACGGAAGAGAAGAACAAAGGCTGGAGAGGAGAATGCGAACAGGGCTGGGGATGAGAGTGCTGAT
GAGTGTAGGGGTGGTGCTGTGTGATTTAATTGATTTGCCTGTGTGTACGGGGCGTGGGGGGAGAC
GGGACTTGCGCTCGAGCAACCTGATGCAGCCGGGTAAATAAAGTTGAAATGGCGAGAATGTGAGA
GTAAGGAAGGAAGGAAAGGAGAGTGGAAAGAGAGGAGAGGAGGGT
Right flanking sequence: Indices 41771 -- 42270
GGGTGAAAAGGAGTATTATAACGGTGTTCTACTAACAGATTTTGGAGTTTGAGATGGCCGGGGGC
AAACTCGTGGGGTTATCGGTAACTCCGGATCAGCCAGTGGTTACCGAATGCAAACAAACGGTAGT
TGGGTGAAAGCTATGCATGCGGATCACTCGTGTGTGCTTCCCTCCTTCAGCCCTGCTGATTACTT
TCGCCTCGGCCGTGGTTGGCTAGGCGATGAGTAGACGCTCGTGGTCGCGTATAACCGAGAGGGTC
AAATATAGAGAAGATTAGTGCCAAGTAGAGCCAAGCATAGGTCCATACGTCGATGGATCGGCCCG
TCGGTCATGGCCAGGGCGCAAGATAGAGTTCACCGGACGTGGTGTGTCCACTACAAGTTCAATAC
ACCAACCAGGGCTAAGCTGAGTCTTGCGGTGTAACCATTCGCCACCATTCGTTTCACCACCTACT
ACCTCACATACCCAAACCCACGTTTCGGTTTGGTGTTGTCCGTGG
Found at i:41781 original size:21 final size:21
Alignment explanation
Indices: 41673--41782 Score: 127
Period size: 21 Copynumber: 5.2 Consensus size: 21
41663 GAGAGTAAGG
*
41673 AAGGAAGGAAAGGAGAGTGGA
1 AAGGAAGGAAAGGAGGGTGGA
*
41694 AA-GAGAGGAGAGGAGGGTGGA
1 AAGGA-AGGAAAGGAGGGTGGA
*
41715 AAGGAAGGAAAGGA-GATCGGA
1 AAGGAAGGAAAGGAGGGT-GGA
*
41736 AAGGAAGGAAAGGA-GATCGGA
1 AAGGAAGGAAAGGAGGGT-GGA
*
41757 AAGGAAGGAAAGGAGGGTGAA
1 AAGGAAGGAAAGGAGGGTGGA
41778 AAGGA
1 AAGGA
41783 GTATTATAAC
Statistics
Matches: 79, Mismatches: 6, Indels: 8
0.85 0.06 0.09
Matches are distributed among these distances:
20 4 0.05
21 71 0.90
22 4 0.05
ACGTcount: A:0.46, C:0.02, G:0.47, T:0.05
Consensus pattern (21 bp):
AAGGAAGGAAAGGAGGGTGGA
Left flanking sequence: Indices 41173 -- 41672
TCTTGGCCTCGCGCTCAAGCCGTTTCTGCTCTCTTTTAGCCTTGGAAGCGGATACAGACATGGTG
ATGGAGTACCTGAAAGTGAAAAATGTTTTATAGGTTGTGCAGGAGGGCGTGAGCGAGGGAAGGGA
GAAGAAGGCAATCGAAAAGGGTGGTGGTGGGGGGTTATGGGGGTGGCTAGTAGGGTAAACGGGGT
GGTTTAGGCGTGTTGGTGGCGCAGTTTTGCGCGATTTCGCCGCGGGGAGCGCGGTACCCGGTGGT
TGTCGTGGGTGGGATTGCGATGCCCCTGTGATGTCATAGCACGGAAGAGAAGAACAAAGGCTGGA
GAGGAGAATGCGAACAGGGCTGGGGATGAGAGTGCTGATGAGTGTAGGGGTGGTGCTGTGTGATT
TAATTGATTTGCCTGTGTGTACGGGGCGTGGGGGGAGACGGGACTTGCGCTCGAGCAACCTGATG
CAGCCGGGTAAATAAAGTTGAAATGGCGAGAATGTGAGAGTAAGG
Right flanking sequence: Indices 41783 -- 42282
GTATTATAACGGTGTTCTACTAACAGATTTTGGAGTTTGAGATGGCCGGGGGCAAACTCGTGGGG
TTATCGGTAACTCCGGATCAGCCAGTGGTTACCGAATGCAAACAAACGGTAGTTGGGTGAAAGCT
ATGCATGCGGATCACTCGTGTGTGCTTCCCTCCTTCAGCCCTGCTGATTACTTTCGCCTCGGCCG
TGGTTGGCTAGGCGATGAGTAGACGCTCGTGGTCGCGTATAACCGAGAGGGTCAAATATAGAGAA
GATTAGTGCCAAGTAGAGCCAAGCATAGGTCCATACGTCGATGGATCGGCCCGTCGGTCATGGCC
AGGGCGCAAGATAGAGTTCACCGGACGTGGTGTGTCCACTACAAGTTCAATACACCAACCAGGGC
TAAGCTGAGTCTTGCGGTGTAACCATTCGCCACCATTCGTTTCACCACCTACTACCTCACATACC
CAAACCCACGTTTCGGTTTGGTGTTGTCCGTGGTTCCCACGACCC
Found at i:44229 original size:20 final size:20
Alignment explanation
Indices: 44204--44261 Score: 91
Period size: 20 Copynumber: 2.9 Consensus size: 20
44194 GAGAGTAGAT
44204 AAGGGGTTGGGAGGGAAACC
1 AAGGGGTTGGGAGGGAAACC
44224 AAGGGG-TGGGAAGGGAAACC
1 AAGGGGTTGGG-AGGGAAACC
*
44244 AAGGGGTGGGGAGGGAAA
1 AAGGGGTTGGGAGGGAAA
44262 ACGTGGGATA
Statistics
Matches: 35, Mismatches: 1, Indels: 4
0.88 0.03 0.10
Matches are distributed among these distances:
19 4 0.11
20 28 0.80
21 3 0.09
ACGTcount: A:0.33, C:0.07, G:0.53, T:0.07
Consensus pattern (20 bp):
AAGGGGTTGGGAGGGAAACC
Left flanking sequence: Indices 43704 -- 44203
GAGGGCCTGGCGGAGTACGTGTCCAAGGAGGACCTTTTGGCGCAGCTGGACATCTTGGTGATCAG
TGTGCCGTTGAACAAGCACACCCACCACTTGGTGGACAAGCAGATGTTCGACGGGATGAAGGACG
GGGTGATTTTGATCAACACCGCGCGCGGAGCCGTGGTGGACGAGGCCGAGCTCATCCGCCAGTTG
AAGAGCGGAAAGGTGGGTGCGTTTGGCTCGGACGTGTTTGAGCACGAGCCCGAGGTGCCCGACGA
ATTGATCGACATGGAGAACGTGGTGTCGTTGCCCCACATGGGCACGCGGTCGCAGGACGCGGTGC
ACAACATGGAGGCGTGGACGGTGGACAACGTGATCAGCTATATCAAGACGGGCAAGGTGAAGCTG
ATTGTGCCGGAGCAGGCGGGCATGGACTGGAGCGACCACAAGCCTTTGGTGTGAGGCCGTTGGTG
TGAGGTAGGTTAATGACGAATAGACAATATGGATAGAGAGTAGAT
Right flanking sequence: Indices 44262 -- 44761
ACGTGGGATAGGATGGTTCAATGGTTCAACTGGATCATCCGGATCAATGGTGTATTGGTTCAGTG
CGTACTATGTGGTCAACGGGCTCATTAGTCCAAGGGTTCGATGGTAACGTGCTCATGGCTTCAAT
ACTTGAAGTAGGCTCAATGGGTTCAATGGTACTAAGTGAAAGATGAAATGGTTCAATTGCTTCCA
CGGATCAACTGCTTCCATGGTTCCATGGTACGATGAGATCAATAGGATCACGAGGCCAATGGGAA
CTTTGGGCTCAATAGGCCGGGATCAAAGTGAATAGATAGTGTGGCGCTCAACCCTGAGCTTTAAG
CCTGCTTTTATTACTATATCGACTACTGTCGGGGGTCCGTACACTCCCGATTGTTGATGGTTTAT
TTTCCGTCATTTCCAAGCCTCTTTGGCTTTGGGGCATTAGTCTCGGTTGCACGGGGTGATGGAGG
CACGCCAAGGAGCCAGCTCACACCAGGTGGTAGCACCGTTCCCGC
Found at i:47205 original size:14 final size:14
Alignment explanation
Indices: 47186--47223 Score: 67
Period size: 14 Copynumber: 2.7 Consensus size: 14
47176 TGTAGGGTGG
47186 AAGTGGGTGGGAAC
1 AAGTGGGTGGGAAC
47200 AAGTGGGTGGGAAC
1 AAGTGGGTGGGAAC
*
47214 AAGTGAGTGG
1 AAGTGGGTGG
47224 TGAGTGGTGG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.29, C:0.05, G:0.50, T:0.16
Consensus pattern (14 bp):
AAGTGGGTGGGAAC
Left flanking sequence: Indices 46686 -- 47185
AAAAGGAGGGGTTGGGGGCGTTCTACATCTCGTACCCGACGACGCTCATGACCAACATCCCGTTC
TCGTCGCTCAACTTTGGCTTCTACGAGTACACGTCGCAGCTCGTCAACCCCACCGGCGTGTACTC
GCCGTGGGCCCACTGTGTGGCCGGTGGTGTTGCTGGTGGTATTGCCGCGGCGTTGACCAACCCGC
TTGACTGTGTCAAGACCCTTTTACAAACCAAGGGGATGGCGGAAAACGACATGGTGCGCAATGCC
CTGGGGTTCTGGCTGGGCACCCGTGCGTTGTACCACGAGGCCGGGATGGCCGGGTTCTTCAAGGG
GTTGAAGCCGCGGATTATCTTCAACATCCCCGCCACTGCGATCTCGTGGACTGCCTACGAGCTTG
CCAAGGAGATCTTGCTCCACTAGACGATGTATACATAGAGGGGCTGGGAACAGCCGGCACGACGT
GCGTTAATGAATGAAAGAGCGAATAGACAGGTGGGTGTAGGGTGG
Right flanking sequence: Indices 47224 -- 47723
TGAGTGGTGGGTGGGAACAGGTGTGAGTGGGGGAACAATTCGAGTAGGGTGGGAACAAGTGCGAG
TGTTGGGTAGAAACAAGTGCGAGTAGGGTGGAAACAGATGCGAGTGTGGAGTGGGAACAGATGCG
AGAACGTATGGTGGGCCAATAGTGCGGGTCTGTGCGGTGGGTATAACCAGTGCGACCAGGTTTCT
TGTCATTTCTTGGGATAACCAAGTTCGTAGGGTCAATTGACTAGTTGACCGTGGACGATGGGCGA
AATTGGTTTGTCAGAGAACGTGTAGGAGCGAAGTGTGTGTGAACGATGTGTGGGAGTGACGCTAG
TAGAAGCATGGAATGGGGAAACGTGTAGCCGACACCGCGAAGAGCTCGCTACCGTAGGCTAGCAG
GCCAGGAGCCCAGTGAGAGTGTTCACGTGCGGTGGGAACGCCAGGAACCGTGGCGTGATAAGGGT
AGCTGGTGGTCGTGGATGGGTGCTGGTAGCTGTGGTGGAGTGGCA
Found at i:47290 original size:38 final size:42
Alignment explanation
Indices: 47232--47337 Score: 114
Period size: 44 Copynumber: 2.6 Consensus size: 42
47222 GGTGAGTGGT
* * *
47232 GGGTGGGAACAGGTGTGAGTG-GGG-G-AACAA-TTCGAGTA
1 GGGTGGGAACAAGTGCGAGTGTGGGAGAAACAAGTGCGAGTA
47270 GGGTGGGAACAAGTGCGAGTGTTGGGTAGAAACAAGTGCGAGTA
1 GGGTGGGAACAAGTGCGAGTG-TGGG-AGAAACAAGTGCGAGTA
*
47314 GGGTGGAAAC-AGATGCGAGTGTGG
1 GGGTGGGAACAAG-TGCGAGTGTGG
47338 AGTGGGAACA
Statistics
Matches: 57, Mismatches: 4, Indels: 9
0.81 0.06 0.13
Matches are distributed among these distances:
38 19 0.33
40 3 0.05
42 1 0.02
43 10 0.18
44 24 0.42
ACGTcount: A:0.27, C:0.08, G:0.46, T:0.18
Consensus pattern (42 bp):
GGGTGGGAACAAGTGCGAGTGTGGGAGAAACAAGTGCGAGTA
Left flanking sequence: Indices 46732 -- 47231
CATGACCAACATCCCGTTCTCGTCGCTCAACTTTGGCTTCTACGAGTACACGTCGCAGCTCGTCA
ACCCCACCGGCGTGTACTCGCCGTGGGCCCACTGTGTGGCCGGTGGTGTTGCTGGTGGTATTGCC
GCGGCGTTGACCAACCCGCTTGACTGTGTCAAGACCCTTTTACAAACCAAGGGGATGGCGGAAAA
CGACATGGTGCGCAATGCCCTGGGGTTCTGGCTGGGCACCCGTGCGTTGTACCACGAGGCCGGGA
TGGCCGGGTTCTTCAAGGGGTTGAAGCCGCGGATTATCTTCAACATCCCCGCCACTGCGATCTCG
TGGACTGCCTACGAGCTTGCCAAGGAGATCTTGCTCCACTAGACGATGTATACATAGAGGGGCTG
GGAACAGCCGGCACGACGTGCGTTAATGAATGAAAGAGCGAATAGACAGGTGGGTGTAGGGTGGA
AGTGGGTGGGAACAAGTGGGTGGGAACAAGTGAGTGGTGAGTGGT
Right flanking sequence: Indices 47338 -- 47837
AGTGGGAACAGATGCGAGAACGTATGGTGGGCCAATAGTGCGGGTCTGTGCGGTGGGTATAACCA
GTGCGACCAGGTTTCTTGTCATTTCTTGGGATAACCAAGTTCGTAGGGTCAATTGACTAGTTGAC
CGTGGACGATGGGCGAAATTGGTTTGTCAGAGAACGTGTAGGAGCGAAGTGTGTGTGAACGATGT
GTGGGAGTGACGCTAGTAGAAGCATGGAATGGGGAAACGTGTAGCCGACACCGCGAAGAGCTCGC
TACCGTAGGCTAGCAGGCCAGGAGCCCAGTGAGAGTGTTCACGTGCGGTGGGAACGCCAGGAACC
GTGGCGTGATAAGGGTAGCTGGTGGTCGTGGATGGGTGCTGGTAGCTGTGGTGGAGTGGCAGCCA
GTGGTTTGAAACTTTGGTGGCTCTTGGTTGTTAGCTTCGCTGACTAAGATCGCTGGAGGCCGCCA
TGTTGGCATATCTTGCAGAATGACGACATGTGTGGCGTGCGTTGG
Found at i:47322 original size:21 final size:21
Alignment explanation
Indices: 47232--47333 Score: 79
Period size: 21 Copynumber: 5.0 Consensus size: 21
47222 GGTGAGTGGT
* * *
47232 GGGTGGGAACAGGTGTGAGT-
1 GGGTGGAAACAAGTGCGAGTA
*
47252 GGG-GG-AACAA-TTCGAGTA
1 GGGTGGAAACAAGTGCGAGTA
* *
47270 GGGTGGGAACAAGTGCGAGTGTT
1 GGGTGGAAACAAGTGCGA--GTA
*
47293 GGGTAGAAACAAGTGCGAGTA
1 GGGTGGAAACAAGTGCGAGTA
47314 GGGTGGAAAC-AGATGCGAGT
1 GGGTGGAAACAAG-TGCGAGT
47334 GTGGAGTGGG
Statistics
Matches: 66, Mismatches: 9, Indels: 13
0.75 0.10 0.15
Matches are distributed among these distances:
17 5 0.08
18 7 0.11
19 4 0.06
20 10 0.15
21 22 0.33
23 18 0.27
ACGTcount: A:0.28, C:0.09, G:0.45, T:0.18
Consensus pattern (21 bp):
GGGTGGAAACAAGTGCGAGTA
Left flanking sequence: Indices 46732 -- 47231
CATGACCAACATCCCGTTCTCGTCGCTCAACTTTGGCTTCTACGAGTACACGTCGCAGCTCGTCA
ACCCCACCGGCGTGTACTCGCCGTGGGCCCACTGTGTGGCCGGTGGTGTTGCTGGTGGTATTGCC
GCGGCGTTGACCAACCCGCTTGACTGTGTCAAGACCCTTTTACAAACCAAGGGGATGGCGGAAAA
CGACATGGTGCGCAATGCCCTGGGGTTCTGGCTGGGCACCCGTGCGTTGTACCACGAGGCCGGGA
TGGCCGGGTTCTTCAAGGGGTTGAAGCCGCGGATTATCTTCAACATCCCCGCCACTGCGATCTCG
TGGACTGCCTACGAGCTTGCCAAGGAGATCTTGCTCCACTAGACGATGTATACATAGAGGGGCTG
GGAACAGCCGGCACGACGTGCGTTAATGAATGAAAGAGCGAATAGACAGGTGGGTGTAGGGTGGA
AGTGGGTGGGAACAAGTGGGTGGGAACAAGTGAGTGGTGAGTGGT
Right flanking sequence: Indices 47334 -- 47833
GTGGAGTGGGAACAGATGCGAGAACGTATGGTGGGCCAATAGTGCGGGTCTGTGCGGTGGGTATA
ACCAGTGCGACCAGGTTTCTTGTCATTTCTTGGGATAACCAAGTTCGTAGGGTCAATTGACTAGT
TGACCGTGGACGATGGGCGAAATTGGTTTGTCAGAGAACGTGTAGGAGCGAAGTGTGTGTGAACG
ATGTGTGGGAGTGACGCTAGTAGAAGCATGGAATGGGGAAACGTGTAGCCGACACCGCGAAGAGC
TCGCTACCGTAGGCTAGCAGGCCAGGAGCCCAGTGAGAGTGTTCACGTGCGGTGGGAACGCCAGG
AACCGTGGCGTGATAAGGGTAGCTGGTGGTCGTGGATGGGTGCTGGTAGCTGTGGTGGAGTGGCA
GCCAGTGGTTTGAAACTTTGGTGGCTCTTGGTTGTTAGCTTCGCTGACTAAGATCGCTGGAGGCC
GCCATGTTGGCATATCTTGCAGAATGACGACATGTGTGGCGTGCG
Found at i:47354 original size:44 final size:43
Alignment explanation
Indices: 47254--47355 Score: 118
Period size: 44 Copynumber: 2.3 Consensus size: 43
47244 GTGTGAGTGG
* *
47254 GGGAACAATTCGAGTAGGGTGGGAACAAGTGCGAGTGTTGGGT
1 GGGAACAATGCGAGTAGGGTGGAAACAAGTGCGAGTGTTGGGT
* *
47297 AGAAACAAGTGCGAGTAGGGTGGAAAC-AGATGCGAGTG-TGGAGT
1 GGGAACAA-TGCGAGTAGGGTGGAAACAAG-TGCGAGTGTTGG-GT
47341 GGGAACAGATGCGAG
1 GGGAACA-ATGCGAG
47356 AACGTATGGT
Statistics
Matches: 49, Mismatches: 6, Indels: 7
0.79 0.10 0.11
Matches are distributed among these distances:
43 11 0.22
44 37 0.76
45 1 0.02
ACGTcount: A:0.30, C:0.10, G:0.43, T:0.17
Consensus pattern (43 bp):
GGGAACAATGCGAGTAGGGTGGAAACAAGTGCGAGTGTTGGGT
Left flanking sequence: Indices 46754 -- 47253
TCGCTCAACTTTGGCTTCTACGAGTACACGTCGCAGCTCGTCAACCCCACCGGCGTGTACTCGCC
GTGGGCCCACTGTGTGGCCGGTGGTGTTGCTGGTGGTATTGCCGCGGCGTTGACCAACCCGCTTG
ACTGTGTCAAGACCCTTTTACAAACCAAGGGGATGGCGGAAAACGACATGGTGCGCAATGCCCTG
GGGTTCTGGCTGGGCACCCGTGCGTTGTACCACGAGGCCGGGATGGCCGGGTTCTTCAAGGGGTT
GAAGCCGCGGATTATCTTCAACATCCCCGCCACTGCGATCTCGTGGACTGCCTACGAGCTTGCCA
AGGAGATCTTGCTCCACTAGACGATGTATACATAGAGGGGCTGGGAACAGCCGGCACGACGTGCG
TTAATGAATGAAAGAGCGAATAGACAGGTGGGTGTAGGGTGGAAGTGGGTGGGAACAAGTGGGTG
GGAACAAGTGAGTGGTGAGTGGTGGGTGGGAACAGGTGTGAGTGG
Right flanking sequence: Indices 47356 -- 47855
AACGTATGGTGGGCCAATAGTGCGGGTCTGTGCGGTGGGTATAACCAGTGCGACCAGGTTTCTTG
TCATTTCTTGGGATAACCAAGTTCGTAGGGTCAATTGACTAGTTGACCGTGGACGATGGGCGAAA
TTGGTTTGTCAGAGAACGTGTAGGAGCGAAGTGTGTGTGAACGATGTGTGGGAGTGACGCTAGTA
GAAGCATGGAATGGGGAAACGTGTAGCCGACACCGCGAAGAGCTCGCTACCGTAGGCTAGCAGGC
CAGGAGCCCAGTGAGAGTGTTCACGTGCGGTGGGAACGCCAGGAACCGTGGCGTGATAAGGGTAG
CTGGTGGTCGTGGATGGGTGCTGGTAGCTGTGGTGGAGTGGCAGCCAGTGGTTTGAAACTTTGGT
GGCTCTTGGTTGTTAGCTTCGCTGACTAAGATCGCTGGAGGCCGCCATGTTGGCATATCTTGCAG
AATGACGACATGTGTGGCGTGCGTTGGCTCAGCCGGTTCTCTGGG
Found at i:48360 original size:11 final size:11
Alignment explanation
Indices: 48344--48369 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
48334 TTGAGTCTTT
48344 ACAATGCAAAC
1 ACAATGCAAAC
48355 ACAATGCAAAC
1 ACAATGCAAAC
48366 ACAA
1 ACAA
48370 CGAATTACAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.58, C:0.27, G:0.08, T:0.08
Consensus pattern (11 bp):
ACAATGCAAAC
Left flanking sequence: Indices 47844 -- 48343
CGGTTCTCTGGGTGTTGTGGGTGAGCAAATATCATGCCCGGGCAGGTGAAACCGTTATGGGGCCA
TTGGTATACCTCAATGGCCCTGAAATGGGCTCAGAGTTCACGTGAAACGCTTAGGCAGACACCGG
AGAAAGCGTGGGAGAAGGGAGTCAAACGGTGGGGAGTGGTGGTCTCACCGGTGATGCTAGAGCGA
TGACTAAAGAAGGTAACCCCTGGTACGGCCTTTCCCGATATAGCCGCGCGATCTCGAGTGGAACT
GCCTTTTGAGATCTGATAAGGGAATGGTAGATATGGGGTAGAATTGGTGATCTAAGGAAGATAGC
TTTGAGCTGTATAACGTAATACGGGCTAGATTTAGTAGGTGAAACGGTCTAGGTCAATCCATTGG
CATCGTTGACCCATTTTCTTTAATTTAAAGACGTCTCTCTTAGTCCCTTTACACAGAATTCATAC
AAAATTTGCTGAATACTACCAAAACCTTGAAAGAATTGAGTCTTT
Right flanking sequence: Indices 48370 -- 48869
CGAATTACAACCCTACACCGGGTCATGAGCCCACTCGCCCTATCTACCCACCGTTCTCTTTCATT
ATCCATTACCCTAAGTACCAACTCCGTGGCCCATGGCCGTAAACCGTAAATACAACACTATATTA
GCAAGCCCAATGGGTAGCAGCACAGCCCGCAACCACCCCGTGTTTCCTTTGCCACCAAATTAAGT
ATATCTCTTTCGTTTGTGACGGTGGCAAGAGGATCTCCTCCGGAGGAAGCGAGCATCAGGGGCCC
AAAACGCGTGGCAGCACCATTAGCACTCCAGAAACCACAGCCCCACCCATTCTACGCGTCCACCA
CCGGTGGCACTCAGATAGCCCGCATTTCGCTGATCGACAACCGTTGCGCCACAAACGAAAACAAG
ACACACGAGCCCAAAAAGCCAAGCAAGTGGAAGAACGCCGAACGCGAGTACATCCGCTCCTCTTC
CTCGGTGCGGAACAGGGCAAAGATCCGGCGGATACTGTTGATAAT
Found at i:51176 original size:8 final size:8
Alignment explanation
Indices: 51142--51184 Score: 50
Period size: 8 Copynumber: 5.4 Consensus size: 8
51132 GGTGCCAGAA
*
51142 ACAACCAC
1 ACAACCAT
* *
51150 ATAACCAC
1 ACAACCAT
51158 ACAACCAT
1 ACAACCAT
*
51166 ACAACCGT
1 ACAACCAT
51174 ACAACCAT
1 ACAACCAT
51182 ACA
1 ACA
51185 CTATCGACAC
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
8 30 1.00
ACGTcount: A:0.49, C:0.40, G:0.02, T:0.09
Consensus pattern (8 bp):
ACAACCAT
Left flanking sequence: Indices 50642 -- 51141
GGGAAACCCAGACAATAAACAGTAAATTAAGAGCGGGCCGGATGGTCGTGAATGTATGCCACGAA
GGGCGTCATTGGTCAGACCATATGCCATAACGGTGTCTGACCATTCGAAGTCTCTTCCGTGTGGT
GTTCCGTGTTTTCTCCGTGTGGTCTGTTCGGGGTGAAAAATTGTTCCAGATCGGGTGATTTGAGT
GTAACCACGAGCACTAAGAAAACGGTAAGGGATTTTAAAAGCGGTGACGCAAGGAAGAAAGTGAA
GTAAAGAACACAGTTAGTAGGTTCCCCACTTTTCACCCGATTCCTTGGCATTCCATGTCAAGATG
AAGTACCAGGGGTATGAGTGAAAAATGAAGCCAAAAGAAGCCAACAGGAGAAAGCATGGTTAACA
AACAGTCGTAGCGTAGATATTGACCCCGAGTAATCCCTATAATACAATAAGTTCTGTGTTGTTTC
CAAACATGTCCCATACCAAAACCACTACCCGCACAGGTGCCAGAA
Right flanking sequence: Indices 51185 -- 51684
CTATCGACACCTCAGCTTCATCACTATCACATATTCCTCACACTGAACTACCCAATTTACTCACA
CTTTTACAAAAATCCCATATTTACACGTACCTTGCCTTCACGTATATCCATCTATACCCATATAT
TACAGTTACTGGAGGTTGCTCACCTCAAACAAAAAGTCGCTAAAGTTGATGGTGGCCACCCCCTT
GAAGTCCTTGTCGTACTTCTTGAACACGTCGGTCAACTTGCGCAAGTACACTAGGAGCTCGATGA
ACCCGTCAAACTTGAGCTTGCCCACCGACGTCAGGTACGGGTCGTTCAGGTTCTTGCTGGAAAAC
TTGGCAAACAAGTGGAGCACGAGGTCGGTGTTGAGCTTGTACCCGATCTGCTCCAAGATCTTCTG
GAACTCGCCAAAACTGATGTCGCCCAGCCGGTTCTGGTCCGCCTGGATAAAGAGCTTTTTGTACG
CCAGGAGGTACTTCCACAACAGCACAAACTGCTCGAAGTTGAGCA
Found at i:52019 original size:12 final size:12
Alignment explanation
Indices: 52004--52038 Score: 61
Period size: 12 Copynumber: 2.9 Consensus size: 12
51994 GGTGGGTCTG
52004 GTGGCCCTGCGA
1 GTGGCCCTGCGA
*
52016 GTGGCCTTGCGA
1 GTGGCCCTGCGA
52028 GTGGCCCTGCG
1 GTGGCCCTGCG
52039 GCGCGGGAGG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.06, C:0.31, G:0.43, T:0.20
Consensus pattern (12 bp):
GTGGCCCTGCGA
Left flanking sequence: Indices 51504 -- 52003
GAAAACTTGGCAAACAAGTGGAGCACGAGGTCGGTGTTGAGCTTGTACCCGATCTGCTCCAAGAT
CTTCTGGAACTCGCCAAAACTGATGTCGCCCAGCCGGTTCTGGTCCGCCTGGATAAAGAGCTTTT
TGTACGCCAGGAGGTACTTCCACAACAGCACAAACTGCTCGAAGTTGAGCAGCTGGCCCGGCTCG
CCGGCTCCGCCGCCCGCCAGCGTCAGAAACAACCGGATCATGAGGTGGATCGTCGTGGGGTTGAA
CGGCGACCGGTCGAAATTGAGGAGCGCCAGCGAGAGCTCCTTGGCCATAATCCGACCCAGACGGT
TGACATCGACCTTGTCAAACACCGCCCGGAGCTCCTGGTCGAGCTTGGCCTTCAGCAGCAGCTTC
AGCAGCACCAGCTCCAGCGTGGGCGCGGTCTTTAGCGGCGGAATCGGCAGTTTTTTCGCCGGAAC
CGGCGACTGGTTGTCGGGCCGGCTGGCGTACTGGGGGTGGGTCTG
Right flanking sequence: Indices 52039 -- 52538
GCGCGGGAGGCGGCGCGTGGTGCGACTGGCCCGAGTTCTGGGCGGTTTGTGGGGCGTACTGCTGG
TACTGGGCCGGGGGAGCCTGTTGCGGCTGGTACTGCGGCTGCTGGGGCTGGTACTGGTCGTACCC
GCCGTGCGAGTGGGTGTGGGGCCCCTGGTACTGCGGCTGGGCGTGCTGTTGCGGCGGCTGGTGCT
GTTGTGGCGGCTGGTGGTAGGACTGGCTCTGCGAGGGCGGGGTGGGGTAGTTCTGGTACCCCTGG
GGCTGGTACTGCTGCTGGGGCGGCGCACGGGTCTGTGGAGGCGGTCGCGACTGCTGCTGGGGGGC
GTTTTGGTAGTGGGACCGGTCGTACTGGCCCTGCGACGACGAGAAGCCGTGCTGGAGGCCCTGGG
GAGACGGCTGGTAGGGAGCGTACTGCTGTTTGGGCTGGGACGGCTTCTTGCGCGCCTGCTGGGAC
GCAGCACTCGGAGGCTGGACCCCGTACGCAGCCTGCTGGGGCGTC
Found at i:52225 original size:21 final size:20
Alignment explanation
Indices: 52201--52247 Score: 62
Period size: 18 Copynumber: 2.4 Consensus size: 20
52191 CCCTGGTACT
52201 GCGGCTGGGCGTGCTGTTGCG
1 GCGGCTGGG-GTGCTGTTGCG
*
52222 GCGGCT--GGTGCTGTTGTG
1 GCGGCTGGGGTGCTGTTGCG
52240 GCGGCTGG
1 GCGGCTGG
52248 TGGTAGGACT
Statistics
Matches: 23, Mismatches: 1, Indels: 5
0.79 0.03 0.17
Matches are distributed among these distances:
18 16 0.70
19 1 0.04
21 6 0.26
ACGTcount: A:0.00, C:0.21, G:0.53, T:0.26
Consensus pattern (20 bp):
GCGGCTGGGGTGCTGTTGCG
Left flanking sequence: Indices 51701 -- 52200
GGCTCCGCCGCCCGCCAGCGTCAGAAACAACCGGATCATGAGGTGGATCGTCGTGGGGTTGAACG
GCGACCGGTCGAAATTGAGGAGCGCCAGCGAGAGCTCCTTGGCCATAATCCGACCCAGACGGTTG
ACATCGACCTTGTCAAACACCGCCCGGAGCTCCTGGTCGAGCTTGGCCTTCAGCAGCAGCTTCAG
CAGCACCAGCTCCAGCGTGGGCGCGGTCTTTAGCGGCGGAATCGGCAGTTTTTTCGCCGGAACCG
GCGACTGGTTGTCGGGCCGGCTGGCGTACTGGGGGTGGGTCTGGTGGCCCTGCGAGTGGCCTTGC
GAGTGGCCCTGCGGCGCGGGAGGCGGCGCGTGGTGCGACTGGCCCGAGTTCTGGGCGGTTTGTGG
GGCGTACTGCTGGTACTGGGCCGGGGGAGCCTGTTGCGGCTGGTACTGCGGCTGCTGGGGCTGGT
ACTGGTCGTACCCGCCGTGCGAGTGGGTGTGGGGCCCCTGGTACT
Right flanking sequence: Indices 52248 -- 52747
TGGTAGGACTGGCTCTGCGAGGGCGGGGTGGGGTAGTTCTGGTACCCCTGGGGCTGGTACTGCTG
CTGGGGCGGCGCACGGGTCTGTGGAGGCGGTCGCGACTGCTGCTGGGGGGCGTTTTGGTAGTGGG
ACCGGTCGTACTGGCCCTGCGACGACGAGAAGCCGTGCTGGAGGCCCTGGGGAGACGGCTGGTAG
GGAGCGTACTGCTGTTTGGGCTGGGACGGCTTCTTGCGCGCCTGCTGGGACGCAGCACTCGGAGG
CTGGACCCCGTACGCAGCCTGCTGGGGCGTCGGGTACACGGGCAAGTCGTCCATGGCAAGGGTGG
AGGGCTGACTAGAGGCGTTGTTGACGTAAAAATCGCACGCAACGAAAAAAGTTACCAAGAACGGG
AACAAGAATGGGCTAATGGAGGCAGGGCAGGTAGGGCGACGTGGGTGGGGTGGTGGACGGGTGGG
CGGGGAGAAGGGGTTTTGGGGTGGTTTTAGGTAGTTTGGGTGGAT
Found at i:52232 original size:18 final size:18
Alignment explanation
Indices: 52211--52249 Score: 69
Period size: 18 Copynumber: 2.2 Consensus size: 18
52201 GCGGCTGGGC
52211 GTGCTGTTGCGGCGGCTG
1 GTGCTGTTGCGGCGGCTG
*
52229 GTGCTGTTGTGGCGGCTG
1 GTGCTGTTGCGGCGGCTG
52247 GTG
1 GTG
52250 GTAGGACTGG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.00, C:0.18, G:0.51, T:0.31
Consensus pattern (18 bp):
GTGCTGTTGCGGCGGCTG
Left flanking sequence: Indices 51711 -- 52210
CCCGCCAGCGTCAGAAACAACCGGATCATGAGGTGGATCGTCGTGGGGTTGAACGGCGACCGGTC
GAAATTGAGGAGCGCCAGCGAGAGCTCCTTGGCCATAATCCGACCCAGACGGTTGACATCGACCT
TGTCAAACACCGCCCGGAGCTCCTGGTCGAGCTTGGCCTTCAGCAGCAGCTTCAGCAGCACCAGC
TCCAGCGTGGGCGCGGTCTTTAGCGGCGGAATCGGCAGTTTTTTCGCCGGAACCGGCGACTGGTT
GTCGGGCCGGCTGGCGTACTGGGGGTGGGTCTGGTGGCCCTGCGAGTGGCCTTGCGAGTGGCCCT
GCGGCGCGGGAGGCGGCGCGTGGTGCGACTGGCCCGAGTTCTGGGCGGTTTGTGGGGCGTACTGC
TGGTACTGGGCCGGGGGAGCCTGTTGCGGCTGGTACTGCGGCTGCTGGGGCTGGTACTGGTCGTA
CCCGCCGTGCGAGTGGGTGTGGGGCCCCTGGTACTGCGGCTGGGC
Right flanking sequence: Indices 52250 -- 52749
GTAGGACTGGCTCTGCGAGGGCGGGGTGGGGTAGTTCTGGTACCCCTGGGGCTGGTACTGCTGCT
GGGGCGGCGCACGGGTCTGTGGAGGCGGTCGCGACTGCTGCTGGGGGGCGTTTTGGTAGTGGGAC
CGGTCGTACTGGCCCTGCGACGACGAGAAGCCGTGCTGGAGGCCCTGGGGAGACGGCTGGTAGGG
AGCGTACTGCTGTTTGGGCTGGGACGGCTTCTTGCGCGCCTGCTGGGACGCAGCACTCGGAGGCT
GGACCCCGTACGCAGCCTGCTGGGGCGTCGGGTACACGGGCAAGTCGTCCATGGCAAGGGTGGAG
GGCTGACTAGAGGCGTTGTTGACGTAAAAATCGCACGCAACGAAAAAAGTTACCAAGAACGGGAA
CAAGAATGGGCTAATGGAGGCAGGGCAGGTAGGGCGACGTGGGTGGGGTGGTGGACGGGTGGGCG
GGGAGAAGGGGTTTTGGGGTGGTTTTAGGTAGTTTGGGTGGATTT
Found at i:54207 original size:18 final size:18
Alignment explanation
Indices: 54176--54218 Score: 50
Period size: 18 Copynumber: 2.4 Consensus size: 18
54166 TCTTCCTTGA
*
54176 CACCACCACAACTAATAC
1 CACCACCACAACTAACAC
** *
54194 CACCACCATTACTACCAC
1 CACCACCACAACTAACAC
54212 CACCACC
1 CACCACC
54219 CACACCACTT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.37, C:0.51, G:0.00, T:0.12
Consensus pattern (18 bp):
CACCACCACAACTAACAC
Left flanking sequence: Indices 53676 -- 54175
CGGTGGGATGAGACAAACAGTAGATGACTAGTCTAATTGTCCTATGTTTGACGAGCTTACAAGAA
ATACGGTGCCCATTAACAATAACAACCTTACGGTAAAAGCCCTGCTTGCTGCAACCACTACGTCC
ACATTGGTCCAGTGCCATGCCCCTAATCAGTTCTACCAGAAAACGTCCCTTCTCCCAGCTGTCAC
TCCGCCTGGTCGTGCCCCGACGTGACCGCACTACAACGTTGTAGCGACGTTGACACCTCAGCGAC
ACACGACAACCGACATTGTGTCTCCGCTATATATAGAACCGGCAACCGCGGGCTGCTCACGTGTA
GCAACGGACCCATTCCCAAAAACGGAAGCCCGCCCCAGCCCCGATTTAGTCACAGATTCGGACAA
ACACAAGATCCAGCGGGGTTATGAGATTTGCCACCAAAAGCACGGCCTAGCGACTCGTTAGTAGA
TAAGAAAAACGCCAGTGTATCAACTGGTCACCCGGTCTTCCTTGA
Right flanking sequence: Indices 54219 -- 54718
CACACCACTTCCCACACCCCACACCACCACCCACCACCATCTCTCACCCACTCTCATCTCCGCCA
CCTTCCCCTCTTCCGTGTGCGACTTCTGTTCTTGTGCCATTACGTCATGGTTGCCGTCCCCGCGT
TCGAAATTGTGGGGCAAACGCGCCCGAGACAGCCATTGGGCCCGAACCACGACCCATTCCGGCCA
TTCCCACCCACCACCACACCCATCGTAGCCAAACAACCCCCACAACCCCCCACCACCGTAATTAC
CTCGTGCTCATCGCATCTCCGTTCCTCCTCCCATCTCCCTCCCATCGCTCTTTTCCATCTCTTCG
CTGAGGTCACCAAAGACCACCCCCACAACCACCGCCACAGACCACCCACAGACCCAATGCCCCAA
AAACCACCCTCACCCACCCACCCACACCCCACCAACACCCCGCCCACCCCGATCCGCCCCGCCAC
CGCCCGCCACGCCGCGTTCCCCTCAGTGGCAAACACGCATTTTTT
Found at i:54215 original size:15 final size:15
Alignment explanation
Indices: 54177--54217 Score: 55
Period size: 15 Copynumber: 2.7 Consensus size: 15
54167 CTTCCTTGAC
*
54177 ACCACCACAACTAAT
1 ACCACCACCACTAAT
* *
54192 ACCACCACCATTACT
1 ACCACCACCACTAAT
54207 ACCACCACCAC
1 ACCACCACCAC
54218 CCACACCACT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.39, C:0.49, G:0.00, T:0.12
Consensus pattern (15 bp):
ACCACCACCACTAAT
Left flanking sequence: Indices 53677 -- 54176
GGTGGGATGAGACAAACAGTAGATGACTAGTCTAATTGTCCTATGTTTGACGAGCTTACAAGAAA
TACGGTGCCCATTAACAATAACAACCTTACGGTAAAAGCCCTGCTTGCTGCAACCACTACGTCCA
CATTGGTCCAGTGCCATGCCCCTAATCAGTTCTACCAGAAAACGTCCCTTCTCCCAGCTGTCACT
CCGCCTGGTCGTGCCCCGACGTGACCGCACTACAACGTTGTAGCGACGTTGACACCTCAGCGACA
CACGACAACCGACATTGTGTCTCCGCTATATATAGAACCGGCAACCGCGGGCTGCTCACGTGTAG
CAACGGACCCATTCCCAAAAACGGAAGCCCGCCCCAGCCCCGATTTAGTCACAGATTCGGACAAA
CACAAGATCCAGCGGGGTTATGAGATTTGCCACCAAAAGCACGGCCTAGCGACTCGTTAGTAGAT
AAGAAAAACGCCAGTGTATCAACTGGTCACCCGGTCTTCCTTGAC
Right flanking sequence: Indices 54218 -- 54717
CCACACCACTTCCCACACCCCACACCACCACCCACCACCATCTCTCACCCACTCTCATCTCCGCC
ACCTTCCCCTCTTCCGTGTGCGACTTCTGTTCTTGTGCCATTACGTCATGGTTGCCGTCCCCGCG
TTCGAAATTGTGGGGCAAACGCGCCCGAGACAGCCATTGGGCCCGAACCACGACCCATTCCGGCC
ATTCCCACCCACCACCACACCCATCGTAGCCAAACAACCCCCACAACCCCCCACCACCGTAATTA
CCTCGTGCTCATCGCATCTCCGTTCCTCCTCCCATCTCCCTCCCATCGCTCTTTTCCATCTCTTC
GCTGAGGTCACCAAAGACCACCCCCACAACCACCGCCACAGACCACCCACAGACCCAATGCCCCA
AAAACCACCCTCACCCACCCACCCACACCCCACCAACACCCCGCCCACCCCGATCCGCCCCGCCA
CCGCCCGCCACGCCGCGTTCCCCTCAGTGGCAAACACGCATTTTT
Found at i:54576 original size:12 final size:13
Alignment explanation
Indices: 54557--54590 Score: 52
Period size: 12 Copynumber: 2.7 Consensus size: 13
54547 AGGTCACCAA
54557 AGACCACCCCCAC
1 AGACCACCCCCAC
*
54570 A-ACCACCGCCAC
1 AGACCACCCCCAC
54582 AGACCACCC
1 AGACCACCC
54591 ACAGACCCAA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
12 11 0.61
13 7 0.39
ACGTcount: A:0.32, C:0.59, G:0.09, T:0.00
Consensus pattern (13 bp):
AGACCACCCCCAC
Left flanking sequence: Indices 54057 -- 54556
TTCGGACAAACACAAGATCCAGCGGGGTTATGAGATTTGCCACCAAAAGCACGGCCTAGCGACTC
GTTAGTAGATAAGAAAAACGCCAGTGTATCAACTGGTCACCCGGTCTTCCTTGACACCACCACAA
CTAATACCACCACCATTACTACCACCACCACCCACACCACTTCCCACACCCCACACCACCACCCA
CCACCATCTCTCACCCACTCTCATCTCCGCCACCTTCCCCTCTTCCGTGTGCGACTTCTGTTCTT
GTGCCATTACGTCATGGTTGCCGTCCCCGCGTTCGAAATTGTGGGGCAAACGCGCCCGAGACAGC
CATTGGGCCCGAACCACGACCCATTCCGGCCATTCCCACCCACCACCACACCCATCGTAGCCAAA
CAACCCCCACAACCCCCCACCACCGTAATTACCTCGTGCTCATCGCATCTCCGTTCCTCCTCCCA
TCTCCCTCCCATCGCTCTTTTCCATCTCTTCGCTGAGGTCACCAA
Right flanking sequence: Indices 54591 -- 55090
ACAGACCCAATGCCCCAAAAACCACCCTCACCCACCCACCCACACCCCACCAACACCCCGCCCAC
CCCGATCCGCCCCGCCACCGCCCGCCACGCCGCGTTCCCCTCAGTGGCAAACACGCATTTTTTCC
CACCAGACCGGCCACTCAGCAACCGACTCCCGTGGCGAATGGCTCCCCCAGATGACTCCCGCCCG
AGTTTGAAGGCTCCACGCCCCGTGCTGTCGCGGCAGATCCCCCGGGTGCTGCTGGCCACCCACTT
GTCCGACCTCCAGACGGCCCCCCCGACGCGAGACGGCGCCCACACCGCAGTGCCCGACGACGGCG
AGCCCCAGCAACCGCCGTTGTTCAACAGACGCCCGCTGTACTCGACCATCGAGGTCACCCGCGAG
TCGTTCTACAACTTGGACTACCCCCAGGACCGCGCCGAGCTCGAGCACGCCCAGACAGACCCCAG
CTCGCGCTTCTACGCCCGGGACCACCCACGCACGCTCCGGCTCCT
Found at i:54594 original size:11 final size:12
Alignment explanation
Indices: 54557--54597 Score: 50
Period size: 11 Copynumber: 3.4 Consensus size: 12
54547 AGGTCACCAA
54557 AGACCACCCCCAC
1 AGACCA-CCCCAC
54570 A-ACCACCGCCAC
1 AGACCACC-CCAC
54582 AGACCA-CCCAC
1 AGACCACCCCAC
54593 AGACC
1 AGACC
54598 CAATGCCCCA
Statistics
Matches: 26, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
11 11 0.42
12 10 0.38
13 5 0.19
ACGTcount: A:0.34, C:0.56, G:0.10, T:0.00
Consensus pattern (12 bp):
AGACCACCCCAC
Left flanking sequence: Indices 54057 -- 54556
TTCGGACAAACACAAGATCCAGCGGGGTTATGAGATTTGCCACCAAAAGCACGGCCTAGCGACTC
GTTAGTAGATAAGAAAAACGCCAGTGTATCAACTGGTCACCCGGTCTTCCTTGACACCACCACAA
CTAATACCACCACCATTACTACCACCACCACCCACACCACTTCCCACACCCCACACCACCACCCA
CCACCATCTCTCACCCACTCTCATCTCCGCCACCTTCCCCTCTTCCGTGTGCGACTTCTGTTCTT
GTGCCATTACGTCATGGTTGCCGTCCCCGCGTTCGAAATTGTGGGGCAAACGCGCCCGAGACAGC
CATTGGGCCCGAACCACGACCCATTCCGGCCATTCCCACCCACCACCACACCCATCGTAGCCAAA
CAACCCCCACAACCCCCCACCACCGTAATTACCTCGTGCTCATCGCATCTCCGTTCCTCCTCCCA
TCTCCCTCCCATCGCTCTTTTCCATCTCTTCGCTGAGGTCACCAA
Right flanking sequence: Indices 54598 -- 55097
CAATGCCCCAAAAACCACCCTCACCCACCCACCCACACCCCACCAACACCCCGCCCACCCCGATC
CGCCCCGCCACCGCCCGCCACGCCGCGTTCCCCTCAGTGGCAAACACGCATTTTTTCCCACCAGA
CCGGCCACTCAGCAACCGACTCCCGTGGCGAATGGCTCCCCCAGATGACTCCCGCCCGAGTTTGA
AGGCTCCACGCCCCGTGCTGTCGCGGCAGATCCCCCGGGTGCTGCTGGCCACCCACTTGTCCGAC
CTCCAGACGGCCCCCCCGACGCGAGACGGCGCCCACACCGCAGTGCCCGACGACGGCGAGCCCCA
GCAACCGCCGTTGTTCAACAGACGCCCGCTGTACTCGACCATCGAGGTCACCCGCGAGTCGTTCT
ACAACTTGGACTACCCCCAGGACCGCGCCGAGCTCGAGCACGCCCAGACAGACCCCAGCTCGCGC
TTCTACGCCCGGGACCACCCACGCACGCTCCGGCTCCTGCTGATG
Found at i:55373 original size:3 final size:3
Alignment explanation
Indices: 55365--55404 Score: 62
Period size: 3 Copynumber: 13.3 Consensus size: 3
55355 GGGCGACCTG
* *
55365 GAC GAC GAC GAC GAC GAC GAC GAC GAG GAC GAC GGC GAC G
1 GAC GAC GAC GAC GAC GAC GAC GAC GAC GAC GAC GAC GAC G
55405 CAGACGACAC
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.30, C:0.30, G:0.40, T:0.00
Consensus pattern (3 bp):
GAC
Left flanking sequence: Indices 54865 -- 55364
CGGCCCCCCCGACGCGAGACGGCGCCCACACCGCAGTGCCCGACGACGGCGAGCCCCAGCAACCG
CCGTTGTTCAACAGACGCCCGCTGTACTCGACCATCGAGGTCACCCGCGAGTCGTTCTACAACTT
GGACTACCCCCAGGACCGCGCCGAGCTCGAGCACGCCCAGACAGACCCCAGCTCGCGCTTCTACG
CCCGGGACCACCCACGCACGCTCCGGCTCCTGCTGATGCTCCCGTACGCCACCGAGCTGCCCGCC
GACCAGGCCAAGTTCCTTCTGCACATCGTGCTGCACCTCTACATCGCCATCAAGACGTTGGACAT
CCAGGGGCTGCTCCCGGTGACCGCGAAGGACTTGGCGGAGATCAAGGACGTGGTCGGGGTGCTGG
ACATCGACCTCGCGCTCGAGACAAACCTCTTTGTGTGTCTGGACCACCCGCTGGCGCCCGAGGAC
CAGGAGATGGAGCTCAAGGACCTGATCATCTTTGAGGGCGACCTG
Right flanking sequence: Indices 55405 -- 55904
CAGACGACACCGCTGCCGGGCCCGCGCTGACCCAGCAGCACAAGCGGCTGCCCAAGCTGGCAGCG
GTGGTGGGCGTGCGCACCTGGACCCAGGAGCTCTTGGTGTGGCTCAAAATGAAGTACGACATGCC
CATCCGGCTCCGCATGGCGTTGGCACGGGTGTACTACGCGTTGTGCTTGTGCCGGGGCCAGGACA
TTGCGCTCAAGACCTACGTCAAGGCGTTCGAGGTGCTCACCAAGCACACGCGGTTCATGGCCGCA
CAGGGGTTGCGGTTGCCGTGGCGCCCGCTCTACCAGGAGCTCGAGAACCACTTGCCGCTGGAGGA
CATCATTCTGGGGCCCGTCGAGGTCAAGGACCAGAAGCAGTTGCTCCGGTTGGCCACGCGGGCGG
CGAGCTTTTTCGACCCCCGCGAGATGCCGGCGATCTACGAGGCGGTGGCCCACAACATCACGTTT
TCGAACGCGCTGTTGGTGATGCTGGCGATGTGTCTCGTGCCGAAT
Found at i:61994 original size:19 final size:19
Alignment explanation
Indices: 61970--62007 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
61960 CACGCAGGTT
*
61970 AACGGCTGTCTTACAGACC
1 AACGGCTGTCCTACAGACC
61989 AACGGCTGTCCTACAGACC
1 AACGGCTGTCCTACAGACC
62008 CATGCATTGA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.26, C:0.34, G:0.21, T:0.18
Consensus pattern (19 bp):
AACGGCTGTCCTACAGACC
Left flanking sequence: Indices 61470 -- 61969
ATAATAGACGTAACGAAGAAACTCTGGTAATTTGTCATTTTTGGAAAAATTCAATTACAATTGAA
GAATCGTGCTATTCTCAAAACGGCTATTTTTAAACCGGCTATTCTTGAAATCCACCGTTTTCTTC
CAATTTACTAGGCTGCTTTTTCTCATTACAGAGCCTATAGTTTGTAAACGCTTCAGCCTTGCAAG
TCATCCGAATCAGGCTATTTTTAAACCTTTCACCATTATCTTCCATTTTCTACTAGTTTGCTATA
GATCGTTAAAGAGCCTTTAGTTTCGTAACGCTTCATTCGAATCGAGCTATTTTTTATACCAGCTA
CCATTGTCTTCTATTTTCTATTAGCCTGCTTTATCTCGTTACAGCATTTGGTTTCGTAAACACTT
CAGAGAGCCATCCACAATCATCTTTCCATTTTCTCCTAGCCTGCTACGCTACAGACCCTTTAGCT
TCGTAAATGCTTCAACCATCCCATTGTATGCATCTCACGCAGGTT
Right flanking sequence: Indices 62008 -- 62507
CATGCATTGACCATGACAGACCATGCATTGACCATGACAGACCATGACAGACCATGCATTGACCA
TGACACATGCATTACCATGACAGCCGACTCAAACCACCCACACCACCCAAGCATCCCACTACTCT
CACTCGACTCAGCGTGGAAATTCCACACGACGCAAGCACGTGAACATCTCGTCAACGTATCCACT
GGGCCCACTTTAGTCTCACGGTAGATAGACCGCCGTGGCACCTGAATAAATCCCACAGACCCAGC
AAGCACACCGACGCCCACCATGTGCGCAGCCCACCAGTCTGTCCCTTCGAGCCGTTCAGGTCGCA
CCGGACCACTGATGACCACCCTTGGGGAACCGGGCGAAACCACGCGGACGCCCAGCAACCCGCAT
GGGGATAAAAAGCACCCCTTCCTGGGCCTCCGCGAGGCCCACGAGCAGCCCGACCCGAAGCCCCG
CGAGGTGCTTCGGGGCATAACCTGTACGATGCCCTATGTAAACGA
Found at i:62031 original size:10 final size:10
Alignment explanation
Indices: 62016--62077 Score: 74
Period size: 10 Copynumber: 6.0 Consensus size: 10
62006 CCCATGCATT
62016 GACCATGACA
1 GACCATGACA
62026 GACCATG-CA
1 GACCATGACA
62035 TTGACCATGACA
1 --GACCATGACA
62047 GACCATGACA
1 GACCATGACA
62057 GACCATG-CA
1 GACCATGACA
62066 TTGACCATGACA
1 --GACCATGACA
62078 CATGCATTAC
Statistics
Matches: 46, Mismatches: 0, Indels: 10
0.82 0.00 0.18
Matches are distributed among these distances:
9 4 0.09
10 24 0.52
11 14 0.30
12 4 0.09
ACGTcount: A:0.35, C:0.29, G:0.19, T:0.16
Consensus pattern (10 bp):
GACCATGACA
Left flanking sequence: Indices 61516 -- 62015
AAATTCAATTACAATTGAAGAATCGTGCTATTCTCAAAACGGCTATTTTTAAACCGGCTATTCTT
GAAATCCACCGTTTTCTTCCAATTTACTAGGCTGCTTTTTCTCATTACAGAGCCTATAGTTTGTA
AACGCTTCAGCCTTGCAAGTCATCCGAATCAGGCTATTTTTAAACCTTTCACCATTATCTTCCAT
TTTCTACTAGTTTGCTATAGATCGTTAAAGAGCCTTTAGTTTCGTAACGCTTCATTCGAATCGAG
CTATTTTTTATACCAGCTACCATTGTCTTCTATTTTCTATTAGCCTGCTTTATCTCGTTACAGCA
TTTGGTTTCGTAAACACTTCAGAGAGCCATCCACAATCATCTTTCCATTTTCTCCTAGCCTGCTA
CGCTACAGACCCTTTAGCTTCGTAAATGCTTCAACCATCCCATTGTATGCATCTCACGCAGGTTA
ACGGCTGTCTTACAGACCAACGGCTGTCCTACAGACCCATGCATT
Right flanking sequence: Indices 62078 -- 62577
CATGCATTACCATGACAGCCGACTCAAACCACCCACACCACCCAAGCATCCCACTACTCTCACTC
GACTCAGCGTGGAAATTCCACACGACGCAAGCACGTGAACATCTCGTCAACGTATCCACTGGGCC
CACTTTAGTCTCACGGTAGATAGACCGCCGTGGCACCTGAATAAATCCCACAGACCCAGCAAGCA
CACCGACGCCCACCATGTGCGCAGCCCACCAGTCTGTCCCTTCGAGCCGTTCAGGTCGCACCGGA
CCACTGATGACCACCCTTGGGGAACCGGGCGAAACCACGCGGACGCCCAGCAACCCGCATGGGGA
TAAAAAGCACCCCTTCCTGGGCCTCCGCGAGGCCCACGAGCAGCCCGACCCGAAGCCCCGCGAGG
TGCTTCGGGGCATAACCTGTACGATGCCCTATGTAAACGACGGGTCTCCCGACGAGTTCGCGTTG
TTGGTGGATTCCGCCACTGACTACTGGGACATATGGAATTTTGTG
Found at i:62033 original size:21 final size:21
Alignment explanation
Indices: 62001--62053 Score: 97
Period size: 21 Copynumber: 2.5 Consensus size: 21
61991 CGGCTGTCCT
62001 ACAGACCCATGCATTGACCATG
1 ACAGA-CCATGCATTGACCATG
62023 ACAGACCATGCATTGACCATG
1 ACAGACCATGCATTGACCATG
62044 ACAGACCATG
1 ACAGACCATG
62054 ACAGACCATG
Statistics
Matches: 31, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
21 26 0.84
22 5 0.16
ACGTcount: A:0.34, C:0.30, G:0.19, T:0.17
Consensus pattern (21 bp):
ACAGACCATGCATTGACCATG
Left flanking sequence: Indices 61501 -- 62000
TTGTCATTTTTGGAAAAATTCAATTACAATTGAAGAATCGTGCTATTCTCAAAACGGCTATTTTT
AAACCGGCTATTCTTGAAATCCACCGTTTTCTTCCAATTTACTAGGCTGCTTTTTCTCATTACAG
AGCCTATAGTTTGTAAACGCTTCAGCCTTGCAAGTCATCCGAATCAGGCTATTTTTAAACCTTTC
ACCATTATCTTCCATTTTCTACTAGTTTGCTATAGATCGTTAAAGAGCCTTTAGTTTCGTAACGC
TTCATTCGAATCGAGCTATTTTTTATACCAGCTACCATTGTCTTCTATTTTCTATTAGCCTGCTT
TATCTCGTTACAGCATTTGGTTTCGTAAACACTTCAGAGAGCCATCCACAATCATCTTTCCATTT
TCTCCTAGCCTGCTACGCTACAGACCCTTTAGCTTCGTAAATGCTTCAACCATCCCATTGTATGC
ATCTCACGCAGGTTAACGGCTGTCTTACAGACCAACGGCTGTCCT
Right flanking sequence: Indices 62054 -- 62553
ACAGACCATGCATTGACCATGACACATGCATTACCATGACAGCCGACTCAAACCACCCACACCAC
CCAAGCATCCCACTACTCTCACTCGACTCAGCGTGGAAATTCCACACGACGCAAGCACGTGAACA
TCTCGTCAACGTATCCACTGGGCCCACTTTAGTCTCACGGTAGATAGACCGCCGTGGCACCTGAA
TAAATCCCACAGACCCAGCAAGCACACCGACGCCCACCATGTGCGCAGCCCACCAGTCTGTCCCT
TCGAGCCGTTCAGGTCGCACCGGACCACTGATGACCACCCTTGGGGAACCGGGCGAAACCACGCG
GACGCCCAGCAACCCGCATGGGGATAAAAAGCACCCCTTCCTGGGCCTCCGCGAGGCCCACGAGC
AGCCCGACCCGAAGCCCCGCGAGGTGCTTCGGGGCATAACCTGTACGATGCCCTATGTAAACGAC
GGGTCTCCCGACGAGTTCGCGTTGTTGGTGGATTCCGCCACTGAC
Found at i:62051 original size:31 final size:31
Alignment explanation
Indices: 62016--62077 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
62006 CCCATGCATT
62016 GACCATGACAGACCATGCATTGACCATGACA
1 GACCATGACAGACCATGCATTGACCATGACA
62047 GACCATGACAGACCATGCATTGACCATGACA
1 GACCATGACAGACCATGCATTGACCATGACA
62078 CATGCATTAC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.35, C:0.29, G:0.19, T:0.16
Consensus pattern (31 bp):
GACCATGACAGACCATGCATTGACCATGACA
Left flanking sequence: Indices 61516 -- 62015
AAATTCAATTACAATTGAAGAATCGTGCTATTCTCAAAACGGCTATTTTTAAACCGGCTATTCTT
GAAATCCACCGTTTTCTTCCAATTTACTAGGCTGCTTTTTCTCATTACAGAGCCTATAGTTTGTA
AACGCTTCAGCCTTGCAAGTCATCCGAATCAGGCTATTTTTAAACCTTTCACCATTATCTTCCAT
TTTCTACTAGTTTGCTATAGATCGTTAAAGAGCCTTTAGTTTCGTAACGCTTCATTCGAATCGAG
CTATTTTTTATACCAGCTACCATTGTCTTCTATTTTCTATTAGCCTGCTTTATCTCGTTACAGCA
TTTGGTTTCGTAAACACTTCAGAGAGCCATCCACAATCATCTTTCCATTTTCTCCTAGCCTGCTA
CGCTACAGACCCTTTAGCTTCGTAAATGCTTCAACCATCCCATTGTATGCATCTCACGCAGGTTA
ACGGCTGTCTTACAGACCAACGGCTGTCCTACAGACCCATGCATT
Right flanking sequence: Indices 62078 -- 62577
CATGCATTACCATGACAGCCGACTCAAACCACCCACACCACCCAAGCATCCCACTACTCTCACTC
GACTCAGCGTGGAAATTCCACACGACGCAAGCACGTGAACATCTCGTCAACGTATCCACTGGGCC
CACTTTAGTCTCACGGTAGATAGACCGCCGTGGCACCTGAATAAATCCCACAGACCCAGCAAGCA
CACCGACGCCCACCATGTGCGCAGCCCACCAGTCTGTCCCTTCGAGCCGTTCAGGTCGCACCGGA
CCACTGATGACCACCCTTGGGGAACCGGGCGAAACCACGCGGACGCCCAGCAACCCGCATGGGGA
TAAAAAGCACCCCTTCCTGGGCCTCCGCGAGGCCCACGAGCAGCCCGACCCGAAGCCCCGCGAGG
TGCTTCGGGGCATAACCTGTACGATGCCCTATGTAAACGACGGGTCTCCCGACGAGTTCGCGTTG
TTGGTGGATTCCGCCACTGACTACTGGGACATATGGAATTTTGTG
Found at i:64125 original size:21 final size:22
Alignment explanation
Indices: 64084--64240 Score: 160
Period size: 22 Copynumber: 7.2 Consensus size: 22
64074 GGTTGCATTT
* * *
64084 ATAGTGTGGTTTGGATGTCTTT
1 ATAGTGTGGTTTGGTTATCTTC
64106 ATAGTGTGG-TTGGTTATCTTC
1 ATAGTGTGGTTTGGTTATCTTC
64127 ATAGTGTGG-TTGGTTATCTTC
1 ATAGTGTGGTTTGGTTATCTTC
* *
64148 ATAGTGTGGTTTTGTTAACTTC
1 ATAGTGTGGTTTGGTTATCTTC
* **
64170 GTAGTGTGGTTTGGTTGCCTT-
1 ATAGTGTGGTTTGGTTATCTTC
**
64191 -TAGTGTGGTTTGGTTGCCTTC
1 ATAGTGTGGTTTGGTTATCTTC
* *
64212 ATAGTGCCTGGTTTGGTTACCTTG
1 ATAGTG--TGGTTTGGTTATCTTC
64236 ATAGT
1 ATAGT
64241 TCCTGTTTGG
Statistics
Matches: 119, Mismatches: 11, Indels: 8
0.86 0.08 0.06
Matches are distributed among these distances:
20 20 0.17
21 39 0.33
22 41 0.34
24 19 0.16
ACGTcount: A:0.13, C:0.10, G:0.30, T:0.47
Consensus pattern (22 bp):
ATAGTGTGGTTTGGTTATCTTC
Left flanking sequence: Indices 63584 -- 64083
GCGTCAACCAGCTCCTTGGCGAGCTCGTCCGCATCAAGCTCGAGAGTAACTTCCCCGACAAGTTG
TGGTACCAGGTGGTGCGGTTCATCGCCATCTGCCACAACTACGCCCGCGACGTGGTGCTGGGCCG
GCTGCCCGCCGAGGTGGCCACTGGGATCGAGAACTGCGAGTTGCTCAACCCCTACCACAGCATTG
GCAGTCTTGTGTGGTACAAGCAGCCCCGAGGCAAGGGCGAGTGGGTGCGTGCCTGTGGCGCCTTC
ATGGGCATCTCGGGGAACAACACCCGCTACTTGGTGTACGTGTGGGAGTTGGATGGGCTCATCGA
GGCTGATATCCTTGAGTTTACTCTGTTTTTCCCGTGGGCGCTTGGCCCGTTCACCTACGAGGGCA
GACACATTGACTGGAGCCACTTGGTGCAGAACGAGATTGATTGGGAGGGGATGCTTCTGAGACCG
TAGGTGGTGATGGGTGGAGGTCGTTGGTGGCCTTTGGTTGCATTT
Right flanking sequence: Indices 64241 -- 64740
TCCTGTTTGGTTACCCTTAGTACAACTAGTCTTTCGTTCCATTTATAGTAACTAGTCTATGCTTT
CGCTAACCTTCAGTCAATGACACCCAAACTGGTAATTACGGGCGGCCGTCCATGCCCGTTTCACC
CCACCGCCGTCTCTAATGATAAATGTACAGAACAATACCAGTCACCCCTTGACGTCGTTTCAGCG
TGGCTTAGCGACATGACGCCCCGTAGAACCACGTCGAACGCACGCTCGAACACCTACGTTCAAAC
ACCCAAAAGCCGTTCAAACACCCAAACACCACCCATCTAGTCTCCCATCCGTCTCCCATCCGGTC
ACCCGTACCATTTCCTATCGTAGTGGCGATCCGTGCCTGACCACCAAACTCCCTACTCAGGGCTC
ACACAGCCCCCTAGCAACGGCTAGCCCCGTTAGACCACACACCACCTCTCACGCCCTCTCACGCC
CCCTCACACCCACTCCACCCCCTAAAAACCCCTCCACACCACCCC
Found at i:64195 original size:42 final size:43
Alignment explanation
Indices: 64084--64240 Score: 160
Period size: 42 Copynumber: 3.6 Consensus size: 43
64074 GGTTGCATTT
* *
64084 ATAGTGTGGTTTGGATGT-CTTTATAGTGTGG-TTGGTTATCTTC
1 ATAGTGTGGTTTGG-T-TACCTTATAGTGTGGTTTGGTTAACTTC
* *
64127 ATAGTGTGG-TTGGTTATCTTCATAGTGTGGTTTTGTTAACTTC
1 ATAGTGTGGTTTGGTTACCTT-ATAGTGTGGTTTGGTTAACTTC
* * **
64170 GTAGTGTGGTTTGGTTGCCTT-TAGTGTGGTTTGGTTGCCTTC
1 ATAGTGTGGTTTGGTTACCTTATAGTGTGGTTTGGTTAACTTC
64212 ATAGTGCCTGGTTTGGTTACCTTGATAGT
1 ATAGTG--TGGTTTGGTTACCTT-ATAGT
64241 TCCTGTTTGG
Statistics
Matches: 94, Mismatches: 12, Indels: 13
0.79 0.10 0.11
Matches are distributed among these distances:
40 1 0.01
41 3 0.03
42 36 0.38
43 27 0.29
44 23 0.24
46 4 0.04
ACGTcount: A:0.13, C:0.10, G:0.30, T:0.47
Consensus pattern (43 bp):
ATAGTGTGGTTTGGTTACCTTATAGTGTGGTTTGGTTAACTTC
Left flanking sequence: Indices 63584 -- 64083
GCGTCAACCAGCTCCTTGGCGAGCTCGTCCGCATCAAGCTCGAGAGTAACTTCCCCGACAAGTTG
TGGTACCAGGTGGTGCGGTTCATCGCCATCTGCCACAACTACGCCCGCGACGTGGTGCTGGGCCG
GCTGCCCGCCGAGGTGGCCACTGGGATCGAGAACTGCGAGTTGCTCAACCCCTACCACAGCATTG
GCAGTCTTGTGTGGTACAAGCAGCCCCGAGGCAAGGGCGAGTGGGTGCGTGCCTGTGGCGCCTTC
ATGGGCATCTCGGGGAACAACACCCGCTACTTGGTGTACGTGTGGGAGTTGGATGGGCTCATCGA
GGCTGATATCCTTGAGTTTACTCTGTTTTTCCCGTGGGCGCTTGGCCCGTTCACCTACGAGGGCA
GACACATTGACTGGAGCCACTTGGTGCAGAACGAGATTGATTGGGAGGGGATGCTTCTGAGACCG
TAGGTGGTGATGGGTGGAGGTCGTTGGTGGCCTTTGGTTGCATTT
Right flanking sequence: Indices 64241 -- 64740
TCCTGTTTGGTTACCCTTAGTACAACTAGTCTTTCGTTCCATTTATAGTAACTAGTCTATGCTTT
CGCTAACCTTCAGTCAATGACACCCAAACTGGTAATTACGGGCGGCCGTCCATGCCCGTTTCACC
CCACCGCCGTCTCTAATGATAAATGTACAGAACAATACCAGTCACCCCTTGACGTCGTTTCAGCG
TGGCTTAGCGACATGACGCCCCGTAGAACCACGTCGAACGCACGCTCGAACACCTACGTTCAAAC
ACCCAAAAGCCGTTCAAACACCCAAACACCACCCATCTAGTCTCCCATCCGTCTCCCATCCGGTC
ACCCGTACCATTTCCTATCGTAGTGGCGATCCGTGCCTGACCACCAAACTCCCTACTCAGGGCTC
ACACAGCCCCCTAGCAACGGCTAGCCCCGTTAGACCACACACCACCTCTCACGCCCTCTCACGCC
CCCTCACACCCACTCCACCCCCTAAAAACCCCTCCACACCACCCC
Found at i:64258 original size:24 final size:24
Alignment explanation
Indices: 64115--64255 Score: 117
Period size: 22 Copynumber: 6.4 Consensus size: 24
64105 TATAGTGTGG
*
64115 TTGGTTATCTTCATAGTG--TGG-
1 TTGGTTACCTTCATAGTGCCTGGT
*
64136 TTGGTTATCTTCATAGTG--TGGT
1 TTGGTTACCTTCATAGTGCCTGGT
* * *
64158 TTTGTTAACTTCGTAGTG--TGGT
1 TTGGTTACCTTCATAGTGCCTGGT
*
64180 TTGGTTGCCTT--TAGTG--TGGT
1 TTGGTTACCTTCATAGTGCCTGGT
*
64200 TTGGTTGCCTTCATAGTGCCTGGT
1 TTGGTTACCTTCATAGTGCCTGGT
* *
64224 TTGGTTACCTTGATAGTTCCT-GT
1 TTGGTTACCTTCATAGTGCCTGGT
64247 TTGGTTACC
1 TTGGTTACC
64256 CTTAGTACAA
Statistics
Matches: 106, Mismatches: 9, Indels: 8
0.86 0.07 0.07
Matches are distributed among these distances:
20 20 0.19
21 21 0.20
22 32 0.30
23 11 0.10
24 22 0.21
ACGTcount: A:0.11, C:0.13, G:0.28, T:0.48
Consensus pattern (24 bp):
TTGGTTACCTTCATAGTGCCTGGT
Left flanking sequence: Indices 63615 -- 64114
CATCAAGCTCGAGAGTAACTTCCCCGACAAGTTGTGGTACCAGGTGGTGCGGTTCATCGCCATCT
GCCACAACTACGCCCGCGACGTGGTGCTGGGCCGGCTGCCCGCCGAGGTGGCCACTGGGATCGAG
AACTGCGAGTTGCTCAACCCCTACCACAGCATTGGCAGTCTTGTGTGGTACAAGCAGCCCCGAGG
CAAGGGCGAGTGGGTGCGTGCCTGTGGCGCCTTCATGGGCATCTCGGGGAACAACACCCGCTACT
TGGTGTACGTGTGGGAGTTGGATGGGCTCATCGAGGCTGATATCCTTGAGTTTACTCTGTTTTTC
CCGTGGGCGCTTGGCCCGTTCACCTACGAGGGCAGACACATTGACTGGAGCCACTTGGTGCAGAA
CGAGATTGATTGGGAGGGGATGCTTCTGAGACCGTAGGTGGTGATGGGTGGAGGTCGTTGGTGGC
CTTTGGTTGCATTTATAGTGTGGTTTGGATGTCTTTATAGTGTGG
Right flanking sequence: Indices 64256 -- 64755
CTTAGTACAACTAGTCTTTCGTTCCATTTATAGTAACTAGTCTATGCTTTCGCTAACCTTCAGTC
AATGACACCCAAACTGGTAATTACGGGCGGCCGTCCATGCCCGTTTCACCCCACCGCCGTCTCTA
ATGATAAATGTACAGAACAATACCAGTCACCCCTTGACGTCGTTTCAGCGTGGCTTAGCGACATG
ACGCCCCGTAGAACCACGTCGAACGCACGCTCGAACACCTACGTTCAAACACCCAAAAGCCGTTC
AAACACCCAAACACCACCCATCTAGTCTCCCATCCGTCTCCCATCCGGTCACCCGTACCATTTCC
TATCGTAGTGGCGATCCGTGCCTGACCACCAAACTCCCTACTCAGGGCTCACACAGCCCCCTAGC
AACGGCTAGCCCCGTTAGACCACACACCACCTCTCACGCCCTCTCACGCCCCCTCACACCCACTC
CACCCCCTAAAAACCCCTCCACACCACCCCGCGTCCCTCGTACCC
Found at i:66377 original size:21 final size:21
Alignment explanation
Indices: 66353--66418 Score: 111
Period size: 21 Copynumber: 3.3 Consensus size: 21
66343 ACACACGAAA
66353 CCATTCAACCAGGTCAAACAG
1 CCATTCAACCAGGTCAAACAG
66374 CCATTCAACCAGGTCAAACAG
1 CCATTCAACCAGGTCAAACAG
66395 CCATT---CCAGGTCAAACAG
1 CCATTCAACCAGGTCAAACAG
66413 CCATTC
1 CCATTC
66419 CAGGCCAAAT
Statistics
Matches: 44, Mismatches: 0, Indels: 4
0.92 0.00 0.08
Matches are distributed among these distances:
18 18 0.41
21 26 0.59
ACGTcount: A:0.35, C:0.35, G:0.14, T:0.17
Consensus pattern (21 bp):
CCATTCAACCAGGTCAAACAG
Left flanking sequence: Indices 65853 -- 66352
GAGCTACGCGGAGGCGTCGATGGTCGAGGACTTCTTTGCGTCGGACGCCAAGCTCATGGCGGTGG
TGGGGATCTTGGAATACGACCCCGCCACCCCGACGATGAAGGCGTGCCACCGCCACCACTTGGCG
CAGCGCCAGTTGACCCAGGTGGTCCCGGTGGAGAACGTGGCGATGTTCAAGCGGGACTTTGACTT
GAACTTTTTGAAGAACGTGGTGTTGGCGCGGTACTTTGACGACCTGACCAACAACATGTTGCTGA
CGCTTATCTACACCAACCAGGTGGATATTATCAACTACTTGATTTCGCTGGAGGTGTTGGCGGAG
TTGTTTGCATTGTACAAGGGGTGTGGCGAGCTAATAGGGGGAGCGAATGGAGTGGGTGGTGGAGA
AGGAGGCGAGGGCGATGCACAGGGCGGTAGAAAGGTTGGGGTAGAGGTGAAGACCGAGAGCACAG
ACTGTTCAGAAAAGGCAGCCAAAAAAGCCACCCACACACACGAAA
Right flanking sequence: Indices 66419 -- 66918
CAGGCCAAATATCCCCAGACCAGGCAACCGTTCAACCAAACCAGGAAACCACCCTTTCAGACCAG
GCACCCACAGACGAAGCAACCATACAACCAGACCACCCACCCACCCACACCCTCTCTGGCCAACC
ACTCACCCACACCACCCAGACAACCACCCAAAAACCCACTTCCCACCCCCCCACCGACGCTCTGG
GCGACACCATCATGGCAGACGACCTCGGCGACACCTCGCTCACCCTGCCGCTCAACGCAGACACC
CCGGTGCTCGCGCTGGCCGAGCTCACCCTGGCCGAGCTCACCCCGCCGCCCACCATCCCCTCCAT
AATACCGCTGGACCCGTCGCTCACCACCCGCCGCCGCCACGGCGTCCGCATGCTCCACCAGTACA
TTCTCATGACGAAGCTGCTCCCGCTGTTCCAGAAACAGGAGTTCTACACCTCGATCATCGCCCGC
GGCCTCTTCGACATGGTGTACTTCGCGCTCTCGGACTCCGACAAC
Found at i:66405 original size:18 final size:18
Alignment explanation
Indices: 66361--66427 Score: 98
Period size: 18 Copynumber: 3.6 Consensus size: 18
66351 AACCATTCAA
66361 CCAGGTCAAACAGCCATT
1 CCAGGTCAAACAGCCATT
66379 CAACCAGGTCAAACAGCCATT
1 ---CCAGGTCAAACAGCCATT
66400 CCAGGTCAAACAGCCATT
1 CCAGGTCAAACAGCCATT
*
66418 CCAGGCCAAA
1 CCAGGTCAAA
66428 TATCCCCAGA
Statistics
Matches: 45, Mismatches: 1, Indels: 3
0.92 0.02 0.06
Matches are distributed among these distances:
18 27 0.60
21 18 0.40
ACGTcount: A:0.36, C:0.34, G:0.16, T:0.13
Consensus pattern (18 bp):
CCAGGTCAAACAGCCATT
Left flanking sequence: Indices 65861 -- 66360
CGGAGGCGTCGATGGTCGAGGACTTCTTTGCGTCGGACGCCAAGCTCATGGCGGTGGTGGGGATC
TTGGAATACGACCCCGCCACCCCGACGATGAAGGCGTGCCACCGCCACCACTTGGCGCAGCGCCA
GTTGACCCAGGTGGTCCCGGTGGAGAACGTGGCGATGTTCAAGCGGGACTTTGACTTGAACTTTT
TGAAGAACGTGGTGTTGGCGCGGTACTTTGACGACCTGACCAACAACATGTTGCTGACGCTTATC
TACACCAACCAGGTGGATATTATCAACTACTTGATTTCGCTGGAGGTGTTGGCGGAGTTGTTTGC
ATTGTACAAGGGGTGTGGCGAGCTAATAGGGGGAGCGAATGGAGTGGGTGGTGGAGAAGGAGGCG
AGGGCGATGCACAGGGCGGTAGAAAGGTTGGGGTAGAGGTGAAGACCGAGAGCACAGACTGTTCA
GAAAAGGCAGCCAAAAAAGCCACCCACACACACGAAACCATTCAA
Right flanking sequence: Indices 66428 -- 66927
TATCCCCAGACCAGGCAACCGTTCAACCAAACCAGGAAACCACCCTTTCAGACCAGGCACCCACA
GACGAAGCAACCATACAACCAGACCACCCACCCACCCACACCCTCTCTGGCCAACCACTCACCCA
CACCACCCAGACAACCACCCAAAAACCCACTTCCCACCCCCCCACCGACGCTCTGGGCGACACCA
TCATGGCAGACGACCTCGGCGACACCTCGCTCACCCTGCCGCTCAACGCAGACACCCCGGTGCTC
GCGCTGGCCGAGCTCACCCTGGCCGAGCTCACCCCGCCGCCCACCATCCCCTCCATAATACCGCT
GGACCCGTCGCTCACCACCCGCCGCCGCCACGGCGTCCGCATGCTCCACCAGTACATTCTCATGA
CGAAGCTGCTCCCGCTGTTCCAGAAACAGGAGTTCTACACCTCGATCATCGCCCGCGGCCTCTTC
GACATGGTGTACTTCGCGCTCTCGGACTCCGACAACGCCATCCGG
Found at i:66709 original size:15 final size:15
Alignment explanation
Indices: 66691--66721 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
66681 GGTGCTCGCG
66691 CTGGCCGAGCTCACC
1 CTGGCCGAGCTCACC
66706 CTGGCCGAGCTCACC
1 CTGGCCGAGCTCACC
66721 C
1 C
66722 CGCCGCCCAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.13, C:0.48, G:0.26, T:0.13
Consensus pattern (15 bp):
CTGGCCGAGCTCACC
Left flanking sequence: Indices 66191 -- 66690
ACAAGGGGTGTGGCGAGCTAATAGGGGGAGCGAATGGAGTGGGTGGTGGAGAAGGAGGCGAGGGC
GATGCACAGGGCGGTAGAAAGGTTGGGGTAGAGGTGAAGACCGAGAGCACAGACTGTTCAGAAAA
GGCAGCCAAAAAAGCCACCCACACACACGAAACCATTCAACCAGGTCAAACAGCCATTCAACCAG
GTCAAACAGCCATTCCAGGTCAAACAGCCATTCCAGGCCAAATATCCCCAGACCAGGCAACCGTT
CAACCAAACCAGGAAACCACCCTTTCAGACCAGGCACCCACAGACGAAGCAACCATACAACCAGA
CCACCCACCCACCCACACCCTCTCTGGCCAACCACTCACCCACACCACCCAGACAACCACCCAAA
AACCCACTTCCCACCCCCCCACCGACGCTCTGGGCGACACCATCATGGCAGACGACCTCGGCGAC
ACCTCGCTCACCCTGCCGCTCAACGCAGACACCCCGGTGCTCGCG
Right flanking sequence: Indices 66722 -- 67221
CGCCGCCCACCATCCCCTCCATAATACCGCTGGACCCGTCGCTCACCACCCGCCGCCGCCACGGC
GTCCGCATGCTCCACCAGTACATTCTCATGACGAAGCTGCTCCCGCTGTTCCAGAAACAGGAGTT
CTACACCTCGATCATCGCCCGCGGCCTCTTCGACATGGTGTACTTCGCGCTCTCGGACTCCGACA
ACGCCATCCGGGTGCTCGGCATCGAGCTCACCACGGTGATGATCGAGCAGGACGTGCTGATGGTG
CACGCGATGGCGCTGGCGGTGCGCGACCACGGCGCCGTCACCCCGTTGTACCAGCTCTTGCTCCA
GCTCTTGGGCGAGCAGCTGGCGCCCGGGCTCAAGCTCCAGGCGTTCGAGGCGATCAAGATCCTTT
TGGACCCCAACGCGTCCGACGCCGAGTTCGGGCTGGGGGTGGACGACGCGTGGCTGGCGTATCTC
CGCGGGTTCTACCGCCACATCGCCCCAGCGCTCTTTGGCCACCTC
Found at i:67926 original size:12 final size:12
Alignment explanation
Indices: 67873--68010 Score: 142
Period size: 12 Copynumber: 11.3 Consensus size: 12
67863 GTAGAGTGTA
67873 GGTGAGAAGCAG
1 GGTGAGAAGCAG
*
67885 GGTGAAAAGCAG
1 GGTGAGAAGCAG
*
67897 GGTGAAAAGCAG
1 GGTGAGAAGCAG
67909 GGTGAGAAGCAG
1 GGTGAGAAGCAG
*
67921 GGTGAGAAGGAAG
1 GGTGAGAA-GCAG
67934 GGTG-GAAGACAG
1 GGTGAGAAG-CAG
*
67946 GGTGAGAAGGAAG
1 GGTGAGAA-GCAG
67959 GGTG-GAAGACAG
1 GGTGAGAAG-CAG
67971 GGTG-GAAGACAG
1 GGTGAGAAG-CAG
67983 GGTG-GAAGACAG
1 GGTGAGAAG-CAG
67995 GGTG-GAAGACAG
1 GGTGAGAAG-CAG
68007 GGTG
1 GGTG
68011 GGGAAGGCAC
Statistics
Matches: 115, Mismatches: 6, Indels: 10
0.88 0.05 0.08
Matches are distributed among these distances:
11 2 0.02
12 96 0.83
13 16 0.14
14 1 0.01
ACGTcount: A:0.35, C:0.07, G:0.50, T:0.09
Consensus pattern (12 bp):
GGTGAGAAGCAG
Left flanking sequence: Indices 67373 -- 67872
ACCGCATCCCCGTGCGCCTCGCGGCGGTGCGGTGTCTCAAGCTCATCGTGGCCCAGGCCGACGCC
GCGTGCATTGCCCACATCGTCGACCACAACCTCTTGCAGGGGGTGTTTGACTGGTTGGCGGCCAT
TGCCCACGAGCACTCGTTGGCCAACCTGACGTGTCTCGATCTCATCGAGTTGGCGCGCCACACCG
TCAACGACCCCGCCACCTGTCTGACCGGACGGTACATGGCCCGCCAGTTCCGCCCTGTTTTGCAG
CAGTTTGGCGTCGGGCGGGCGCTTCTCGAGGCCGTCGACGCGGGCCAGGAGCCGCTCGAGGCCGC
GCTGACGCCGCTCGAGGCCACCGAGGTGATCGCGCCGGCCCTGGTGGCCAGCGACGACGAGAAAG
CCGACCACGCGGGCGTGCCGGCGCCGGTGGGGAAGAAAATTGCATTGTAACTGTATTATTGTGAT
AATATATAGCCCGTTTGGGCAGGCAGAGAAGAAGTGTAGAGTGTA
Right flanking sequence: Indices 68011 -- 68510
GGGAAGGCACGGTTGCAGCTGGGGGCCGCAGGCGGCGCCCCCAGACCCCCAACGCTTATTGTGTG
GTGGTAGTGGTAGTGGGTAGTGGTAGTAGTGTTGGTTTGGTGGTGGTTACGATTGGTCGTTTAGG
TGGCTAATGGTGTGTATAGTAATGGTGGGGTACGATGAGGGGACGATGGAGGCTTCAATTGAACG
TCTTTCAGGGGTTTGTACACAGAGCTGAGTGATCGGGTCGATTAAAGTGGTACTACCATTTGGGT
GCTAAGCGCATTACTGCCAACAGGATTCTCCACTCCTCTGGTGGCCTACTCATCCGGTGTTCTAC
TCATCTGGTGGGGTACTCATCCGAGGCCCGTCGTACAGCGAACAATGGGATGTGTCATCTAGGTC
CTTTGCGCCAAGATTTGGCACAATGGTATTGTTACGATAAGATCAGATTTGTGAGGACTCGAAAG
TAGTGGGAGCTGTCACGAAGAACAAGATCCACGATTGAGTCACAT
Found at i:67941 original size:24 final size:24
Alignment explanation
Indices: 67873--68011 Score: 160
Period size: 24 Copynumber: 5.7 Consensus size: 24
67863 GTAGAGTGTA
* *
67873 GGTGAGAAGCAGGGT-GAAAAGCAG
1 GGTGAGAAGAAGGGTGGAAGA-CAG
* *
67897 GGTGAAAAGCAGGGTGAGAAG-CAG
1 GGTGAGAAGAAGGGTG-GAAGACAG
67921 GGTGAGAAGGAAGGGTGGAAGACAG
1 GGTGAGAA-GAAGGGTGGAAGACAG
67946 GGTGAGAAGGAAGGGTGGAAGACAG
1 GGTGAGAA-GAAGGGTGGAAGACAG
67971 GGTG-GAAGACAGGGTGGAAGACAG
1 GGTGAGAAGA-AGGGTGGAAGACAG
67995 GGTG-GAAGACAGGGTGG
1 GGTGAGAAGA-AGGGTGG
68012 GGAAGGCACG
Statistics
Matches: 106, Mismatches: 4, Indels: 10
0.88 0.03 0.08
Matches are distributed among these distances:
23 2 0.02
24 62 0.58
25 39 0.37
26 3 0.03
ACGTcount: A:0.35, C:0.06, G:0.50, T:0.09
Consensus pattern (24 bp):
GGTGAGAAGAAGGGTGGAAGACAG
Left flanking sequence: Indices 67373 -- 67872
ACCGCATCCCCGTGCGCCTCGCGGCGGTGCGGTGTCTCAAGCTCATCGTGGCCCAGGCCGACGCC
GCGTGCATTGCCCACATCGTCGACCACAACCTCTTGCAGGGGGTGTTTGACTGGTTGGCGGCCAT
TGCCCACGAGCACTCGTTGGCCAACCTGACGTGTCTCGATCTCATCGAGTTGGCGCGCCACACCG
TCAACGACCCCGCCACCTGTCTGACCGGACGGTACATGGCCCGCCAGTTCCGCCCTGTTTTGCAG
CAGTTTGGCGTCGGGCGGGCGCTTCTCGAGGCCGTCGACGCGGGCCAGGAGCCGCTCGAGGCCGC
GCTGACGCCGCTCGAGGCCACCGAGGTGATCGCGCCGGCCCTGGTGGCCAGCGACGACGAGAAAG
CCGACCACGCGGGCGTGCCGGCGCCGGTGGGGAAGAAAATTGCATTGTAACTGTATTATTGTGAT
AATATATAGCCCGTTTGGGCAGGCAGAGAAGAAGTGTAGAGTGTA
Right flanking sequence: Indices 68012 -- 68511
GGAAGGCACGGTTGCAGCTGGGGGCCGCAGGCGGCGCCCCCAGACCCCCAACGCTTATTGTGTGG
TGGTAGTGGTAGTGGGTAGTGGTAGTAGTGTTGGTTTGGTGGTGGTTACGATTGGTCGTTTAGGT
GGCTAATGGTGTGTATAGTAATGGTGGGGTACGATGAGGGGACGATGGAGGCTTCAATTGAACGT
CTTTCAGGGGTTTGTACACAGAGCTGAGTGATCGGGTCGATTAAAGTGGTACTACCATTTGGGTG
CTAAGCGCATTACTGCCAACAGGATTCTCCACTCCTCTGGTGGCCTACTCATCCGGTGTTCTACT
CATCTGGTGGGGTACTCATCCGAGGCCCGTCGTACAGCGAACAATGGGATGTGTCATCTAGGTCC
TTTGCGCCAAGATTTGGCACAATGGTATTGTTACGATAAGATCAGATTTGTGAGGACTCGAAAGT
AGTGGGAGCTGTCACGAAGAACAAGATCCACGATTGAGTCACATT
Found at i:68011 original size:12 final size:12
Alignment explanation
Indices: 67906--68011 Score: 146
Period size: 12 Copynumber: 8.7 Consensus size: 12
67896 GGGTGAAAAG
67906 CAGGGTGAGAAG-
1 CAGGGTG-GAAGA
67918 CAGGGTGAGAAGGA
1 CAGGGTG-GAA-GA
67932 -AGGGTGGAAGA
1 CAGGGTGGAAGA
67943 CAGGGTGAGAAGGA
1 CAGGGTG-GAA-GA
67957 -AGGGTGGAAGA
1 CAGGGTGGAAGA
67968 CAGGGTGGAAGA
1 CAGGGTGGAAGA
67980 CAGGGTGGAAGA
1 CAGGGTGGAAGA
67992 CAGGGTGGAAGA
1 CAGGGTGGAAGA
68004 CAGGGTGG
1 CAGGGTGG
68012 GGAAGGCACG
Statistics
Matches: 88, Mismatches: 0, Indels: 12
0.88 0.00 0.12
Matches are distributed among these distances:
11 4 0.05
12 66 0.75
13 16 0.18
14 2 0.02
ACGTcount: A:0.33, C:0.07, G:0.52, T:0.08
Consensus pattern (12 bp):
CAGGGTGGAAGA
Left flanking sequence: Indices 67406 -- 67905
GTCTCAAGCTCATCGTGGCCCAGGCCGACGCCGCGTGCATTGCCCACATCGTCGACCACAACCTC
TTGCAGGGGGTGTTTGACTGGTTGGCGGCCATTGCCCACGAGCACTCGTTGGCCAACCTGACGTG
TCTCGATCTCATCGAGTTGGCGCGCCACACCGTCAACGACCCCGCCACCTGTCTGACCGGACGGT
ACATGGCCCGCCAGTTCCGCCCTGTTTTGCAGCAGTTTGGCGTCGGGCGGGCGCTTCTCGAGGCC
GTCGACGCGGGCCAGGAGCCGCTCGAGGCCGCGCTGACGCCGCTCGAGGCCACCGAGGTGATCGC
GCCGGCCCTGGTGGCCAGCGACGACGAGAAAGCCGACCACGCGGGCGTGCCGGCGCCGGTGGGGA
AGAAAATTGCATTGTAACTGTATTATTGTGATAATATATAGCCCGTTTGGGCAGGCAGAGAAGAA
GTGTAGAGTGTAGGTGAGAAGCAGGGTGAAAAGCAGGGTGAAAAG
Right flanking sequence: Indices 68012 -- 68511
GGAAGGCACGGTTGCAGCTGGGGGCCGCAGGCGGCGCCCCCAGACCCCCAACGCTTATTGTGTGG
TGGTAGTGGTAGTGGGTAGTGGTAGTAGTGTTGGTTTGGTGGTGGTTACGATTGGTCGTTTAGGT
GGCTAATGGTGTGTATAGTAATGGTGGGGTACGATGAGGGGACGATGGAGGCTTCAATTGAACGT
CTTTCAGGGGTTTGTACACAGAGCTGAGTGATCGGGTCGATTAAAGTGGTACTACCATTTGGGTG
CTAAGCGCATTACTGCCAACAGGATTCTCCACTCCTCTGGTGGCCTACTCATCCGGTGTTCTACT
CATCTGGTGGGGTACTCATCCGAGGCCCGTCGTACAGCGAACAATGGGATGTGTCATCTAGGTCC
TTTGCGCCAAGATTTGGCACAATGGTATTGTTACGATAAGATCAGATTTGTGAGGACTCGAAAGT
AGTGGGAGCTGTCACGAAGAACAAGATCCACGATTGAGTCACATT
Found at i:68096 original size:13 final size:13
Alignment explanation
Indices: 68078--68102 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
68068 ATTGTGTGGT
68078 GGTAGTGGTAGTG
1 GGTAGTGGTAGTG
68091 GGTAGTGGTAGT
1 GGTAGTGGTAGT
68103 AGTGTTGGTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.00, G:0.52, T:0.32
Consensus pattern (13 bp):
GGTAGTGGTAGTG
Left flanking sequence: Indices 67578 -- 68077
CGCCACCTGTCTGACCGGACGGTACATGGCCCGCCAGTTCCGCCCTGTTTTGCAGCAGTTTGGCG
TCGGGCGGGCGCTTCTCGAGGCCGTCGACGCGGGCCAGGAGCCGCTCGAGGCCGCGCTGACGCCG
CTCGAGGCCACCGAGGTGATCGCGCCGGCCCTGGTGGCCAGCGACGACGAGAAAGCCGACCACGC
GGGCGTGCCGGCGCCGGTGGGGAAGAAAATTGCATTGTAACTGTATTATTGTGATAATATATAGC
CCGTTTGGGCAGGCAGAGAAGAAGTGTAGAGTGTAGGTGAGAAGCAGGGTGAAAAGCAGGGTGAA
AAGCAGGGTGAGAAGCAGGGTGAGAAGGAAGGGTGGAAGACAGGGTGAGAAGGAAGGGTGGAAGA
CAGGGTGGAAGACAGGGTGGAAGACAGGGTGGAAGACAGGGTGGGGAAGGCACGGTTGCAGCTGG
GGGCCGCAGGCGGCGCCCCCAGACCCCCAACGCTTATTGTGTGGT
Right flanking sequence: Indices 68103 -- 68602
AGTGTTGGTTTGGTGGTGGTTACGATTGGTCGTTTAGGTGGCTAATGGTGTGTATAGTAATGGTG
GGGTACGATGAGGGGACGATGGAGGCTTCAATTGAACGTCTTTCAGGGGTTTGTACACAGAGCTG
AGTGATCGGGTCGATTAAAGTGGTACTACCATTTGGGTGCTAAGCGCATTACTGCCAACAGGATT
CTCCACTCCTCTGGTGGCCTACTCATCCGGTGTTCTACTCATCTGGTGGGGTACTCATCCGAGGC
CCGTCGTACAGCGAACAATGGGATGTGTCATCTAGGTCCTTTGCGCCAAGATTTGGCACAATGGT
ATTGTTACGATAAGATCAGATTTGTGAGGACTCGAAAGTAGTGGGAGCTGTCACGAAGAACAAGA
TCCACGATTGAGTCACATTTAGACACAAATCCATAACCAAATGTGCAATTGCCCCAGTTTACCCC
AAAACTACACCACCCTCTCGTAAACTACCCCACAGCCTTCCCCCA
Found at i:68329 original size:16 final size:16
Alignment explanation
Indices: 68310--68358 Score: 53
Period size: 16 Copynumber: 3.1 Consensus size: 16
68300 CCACTCCTCT
68310 GGTGGCCTACTCATCC
1 GGTGGCCTACTCATCC
** *
68326 GGTGTTCTACTCATCT
1 GGTGGCCTACTCATCC
**
68342 GGTGGGGTACTCATCC
1 GGTGGCCTACTCATCC
68358 G
1 G
68359 AGGCCCGTCG
Statistics
Matches: 26, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
16 26 1.00
ACGTcount: A:0.12, C:0.29, G:0.29, T:0.31
Consensus pattern (16 bp):
GGTGGCCTACTCATCC
Left flanking sequence: Indices 67810 -- 68309
TAACTGTATTATTGTGATAATATATAGCCCGTTTGGGCAGGCAGAGAAGAAGTGTAGAGTGTAGG
TGAGAAGCAGGGTGAAAAGCAGGGTGAAAAGCAGGGTGAGAAGCAGGGTGAGAAGGAAGGGTGGA
AGACAGGGTGAGAAGGAAGGGTGGAAGACAGGGTGGAAGACAGGGTGGAAGACAGGGTGGAAGAC
AGGGTGGGGAAGGCACGGTTGCAGCTGGGGGCCGCAGGCGGCGCCCCCAGACCCCCAACGCTTAT
TGTGTGGTGGTAGTGGTAGTGGGTAGTGGTAGTAGTGTTGGTTTGGTGGTGGTTACGATTGGTCG
TTTAGGTGGCTAATGGTGTGTATAGTAATGGTGGGGTACGATGAGGGGACGATGGAGGCTTCAAT
TGAACGTCTTTCAGGGGTTTGTACACAGAGCTGAGTGATCGGGTCGATTAAAGTGGTACTACCAT
TTGGGTGCTAAGCGCATTACTGCCAACAGGATTCTCCACTCCTCT
Right flanking sequence: Indices 68359 -- 68858
AGGCCCGTCGTACAGCGAACAATGGGATGTGTCATCTAGGTCCTTTGCGCCAAGATTTGGCACAA
TGGTATTGTTACGATAAGATCAGATTTGTGAGGACTCGAAAGTAGTGGGAGCTGTCACGAAGAAC
AAGATCCACGATTGAGTCACATTTAGACACAAATCCATAACCAAATGTGCAATTGCCCCAGTTTA
CCCCAAAACTACACCACCCTCTCGTAAACTACCCCACAGCCTTCCCCCAGTCGTCTCGGATACCC
CTTCGCTCCGGAGCCGCCAGCTTGCATGCGTTATGCTGTTCCACGCATAGTCCAGAACGAGGCCA
CGGCACAGCACGCCTCCACGCTAAACAATAATCCAAAGCCCACACCCGCCTCCTTCCTCTCCATT
GCCTCACACCACGCCTCGCCCATTACCGCCCCACCGCACCCAATCCCCTCCAATTCCCCCATTCC
CCCCTTTCCCCCCCAACGGCTGCTTACATAACAGCTTACGCAACC
Found at i:70515 original size:27 final size:24
Alignment explanation
Indices: 70485--70552 Score: 64
Period size: 27 Copynumber: 2.5 Consensus size: 24
70475 CAACGTACAA
70485 CTACACCGCCACACCACACCACACCC
1 CTACACC-CCACACCA-ACCACACCC
*
70511 TCTACACCCTCTACCACCATCCACACCC
1 -CTACACCC-C-A-CACCAACCACACCC
70539 CTACACCCCCACAC
1 CTACA-CCCCACAC
70553 TCTCACGCCT
Statistics
Matches: 36, Mismatches: 1, Indels: 10
0.77 0.02 0.21
Matches are distributed among these distances:
25 3 0.08
26 2 0.06
27 14 0.39
28 12 0.33
29 5 0.14
ACGTcount: A:0.28, C:0.60, G:0.01, T:0.10
Consensus pattern (24 bp):
CTACACCCCACACCAACCACACCC
Left flanking sequence: Indices 69985 -- 70484
TGGATTATGTTTGACTAGTTCTACGAAGTTGTGCTGTGAATAGTGCTTACTAGTTCTACGAGATT
ATGCTTTTTTGTACCTGTTTACCGGTCTTGAAATAACCTGTAAAACATTGTGCACTCATTCAAGA
CTTCCCCGAGTCACAGCCCCAATTCCTTTAAACCATTGACGATGCAATCGCTTGCGTGTTCCATT
TACGCGTATCTCGTACCTCGAACGTCACAAAGGCAGTAGTCACGAGTCCACCACTCAGTGAAACG
GTTAATTCCAACCTAAAGTAGCACCTTCCTACAATAGCCCACCGACCCCACCATTAATCAAAAAC
CATCCATTACGGCTCTCTCTACTCTTCTCTCTCTTCCACGTCACCCATCTCTGTTTCTCGCTGCC
TCACTTTTTCCAGGTGTCACGTTCGCTATATCGCGATAAGCAACAGCCACTGATCGGGCAAACAC
AGACCAGAAAATCTCGGTAAACCCAGTAAACAACACAACGTACAA
Right flanking sequence: Indices 70553 -- 71052
TCTCACGCCTCCACCCCACACTCACTACACTATTCCCACCACCACCTTCTTGTTTACGCGCATTT
TTTTCATCCACCACCATGTCGATTGATCCCAACACCCGCAAAAAGCTATTGACGCTCCAGAAACA
GGAGGGCAACAAGCAGTGTTTTGACTGCGGTACCCACAACCCGCAGTGGGCCCTGCCCAAGTTCG
GCATCTTCATCTGCCTCGAGTGTGCCGGCGTCCACCGCGGGCTCGGGGTGCACATTTCGTTCGTG
CGGCTGATCACCATGGACCAGTTCAAGCCCGAGGAGACGCTCCGCATGGAAAAGGGCGGCAACAA
CCGGCTCAAGCAGTACTTCAAAGACCACGGAGTGGACCTGGCGCTTCCCCCGGCGCAAAAATACG
ACAATTTCGTCGCCGAGGACTACAAAGAGATGTTGACCTGTGAGGTCGAGGGCCGCGAGTACGTG
GCCAAGGACCACACGGGCGAGACGTTGCCGCGTGCTGGCGCTGCT
Found at i:70528 original size:10 final size:9
Alignment explanation
Indices: 70505--70546 Score: 50
Period size: 9 Copynumber: 4.7 Consensus size: 9
70495 ACACCACACC
70505 ACACCCTCT
1 ACACCCTCT
70514 ACACCCTCT
1 ACACCCTCT
* *
70523 ACCACCATCC
1 A-CACCCTCT
70533 ACACCC-CT
1 ACACCCTCT
70541 ACACCC
1 ACACCC
70547 CCACACTCTC
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
8 7 0.25
9 14 0.50
10 7 0.25
ACGTcount: A:0.26, C:0.60, G:0.00, T:0.14
Consensus pattern (9 bp):
ACACCCTCT
Left flanking sequence: Indices 70005 -- 70504
CTACGAAGTTGTGCTGTGAATAGTGCTTACTAGTTCTACGAGATTATGCTTTTTTGTACCTGTTT
ACCGGTCTTGAAATAACCTGTAAAACATTGTGCACTCATTCAAGACTTCCCCGAGTCACAGCCCC
AATTCCTTTAAACCATTGACGATGCAATCGCTTGCGTGTTCCATTTACGCGTATCTCGTACCTCG
AACGTCACAAAGGCAGTAGTCACGAGTCCACCACTCAGTGAAACGGTTAATTCCAACCTAAAGTA
GCACCTTCCTACAATAGCCCACCGACCCCACCATTAATCAAAAACCATCCATTACGGCTCTCTCT
ACTCTTCTCTCTCTTCCACGTCACCCATCTCTGTTTCTCGCTGCCTCACTTTTTCCAGGTGTCAC
GTTCGCTATATCGCGATAAGCAACAGCCACTGATCGGGCAAACACAGACCAGAAAATCTCGGTAA
ACCCAGTAAACAACACAACGTACAACTACACCGCCACACCACACC
Right flanking sequence: Indices 70547 -- 71046
CCACACTCTCACGCCTCCACCCCACACTCACTACACTATTCCCACCACCACCTTCTTGTTTACGC
GCATTTTTTTCATCCACCACCATGTCGATTGATCCCAACACCCGCAAAAAGCTATTGACGCTCCA
GAAACAGGAGGGCAACAAGCAGTGTTTTGACTGCGGTACCCACAACCCGCAGTGGGCCCTGCCCA
AGTTCGGCATCTTCATCTGCCTCGAGTGTGCCGGCGTCCACCGCGGGCTCGGGGTGCACATTTCG
TTCGTGCGGCTGATCACCATGGACCAGTTCAAGCCCGAGGAGACGCTCCGCATGGAAAAGGGCGG
CAACAACCGGCTCAAGCAGTACTTCAAAGACCACGGAGTGGACCTGGCGCTTCCCCCGGCGCAAA
AATACGACAATTTCGTCGCCGAGGACTACAAAGAGATGTTGACCTGTGAGGTCGAGGGCCGCGAG
TACGTGGCCAAGGACCACACGGGCGAGACGTTGCCGCGTGCTGGC
Found at i:70528 original size:19 final size:17
Alignment explanation
Indices: 70505--70552 Score: 53
Period size: 19 Copynumber: 2.8 Consensus size: 17
70495 ACACCACACC
*
70505 ACACCCTCTACACCCTCT
1 ACACCCTCCACACCC-CT
*
70523 ACCACCATCCACACCCCT
1 A-CACCCTCCACACCCCT
70541 ACACCC-CCACAC
1 ACACCCTCCACAC
70553 TCTCACGCCT
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
16 6 0.23
17 4 0.15
18 4 0.15
19 12 0.46
ACGTcount: A:0.27, C:0.60, G:0.00, T:0.12
Consensus pattern (17 bp):
ACACCCTCCACACCCCT
Left flanking sequence: Indices 70005 -- 70504
CTACGAAGTTGTGCTGTGAATAGTGCTTACTAGTTCTACGAGATTATGCTTTTTTGTACCTGTTT
ACCGGTCTTGAAATAACCTGTAAAACATTGTGCACTCATTCAAGACTTCCCCGAGTCACAGCCCC
AATTCCTTTAAACCATTGACGATGCAATCGCTTGCGTGTTCCATTTACGCGTATCTCGTACCTCG
AACGTCACAAAGGCAGTAGTCACGAGTCCACCACTCAGTGAAACGGTTAATTCCAACCTAAAGTA
GCACCTTCCTACAATAGCCCACCGACCCCACCATTAATCAAAAACCATCCATTACGGCTCTCTCT
ACTCTTCTCTCTCTTCCACGTCACCCATCTCTGTTTCTCGCTGCCTCACTTTTTCCAGGTGTCAC
GTTCGCTATATCGCGATAAGCAACAGCCACTGATCGGGCAAACACAGACCAGAAAATCTCGGTAA
ACCCAGTAAACAACACAACGTACAACTACACCGCCACACCACACC
Right flanking sequence: Indices 70553 -- 71052
TCTCACGCCTCCACCCCACACTCACTACACTATTCCCACCACCACCTTCTTGTTTACGCGCATTT
TTTTCATCCACCACCATGTCGATTGATCCCAACACCCGCAAAAAGCTATTGACGCTCCAGAAACA
GGAGGGCAACAAGCAGTGTTTTGACTGCGGTACCCACAACCCGCAGTGGGCCCTGCCCAAGTTCG
GCATCTTCATCTGCCTCGAGTGTGCCGGCGTCCACCGCGGGCTCGGGGTGCACATTTCGTTCGTG
CGGCTGATCACCATGGACCAGTTCAAGCCCGAGGAGACGCTCCGCATGGAAAAGGGCGGCAACAA
CCGGCTCAAGCAGTACTTCAAAGACCACGGAGTGGACCTGGCGCTTCCCCCGGCGCAAAAATACG
ACAATTTCGTCGCCGAGGACTACAAAGAGATGTTGACCTGTGAGGTCGAGGGCCGCGAGTACGTG
GCCAAGGACCACACGGGCGAGACGTTGCCGCGTGCTGGCGCTGCT
Found at i:71795 original size:14 final size:14
Alignment explanation
Indices: 71750--71831 Score: 96
Period size: 14 Copynumber: 6.0 Consensus size: 14
71740 ATGGTGGTGG
*
71750 GAATGGAAGCAGG-
1 GAATGGTAGCAGGA
* *
71763 GATTGGTTGCAGG-
1 GAATGGTAGCAGGA
*
71776 GAATGGTAGGAGGA
1 GAATGGTAGCAGGA
*
71790 GAATGGTAGTAGGA
1 GAATGGTAGCAGGA
*
71804 GAATGGTATCAGGA
1 GAATGGTAGCAGGA
71818 GAATGGTAGCAGGA
1 GAATGGTAGCAGGA
71832 ATATAGAGGA
Statistics
Matches: 58, Mismatches: 10, Indels: 1
0.84 0.14 0.01
Matches are distributed among these distances:
13 20 0.34
14 38 0.66
ACGTcount: A:0.33, C:0.05, G:0.44, T:0.18
Consensus pattern (14 bp):
GAATGGTAGCAGGA
Left flanking sequence: Indices 71250 -- 71749
GTCGTTGGCCGGCTTCACCGTGGACAACTTCCAGCTGGACCCCGTGGGCACGTTGCTGCGCGGGT
GGGGGTTGTTTTCCAGCGTGGTGGCGAAGCTGGTGTCGGAGGTGAACGAGCTGGTGATCAAGCCC
GGGTTCTCGCAGCTCCAGGAGCTGGAGTTGGGGCTGGAGGCCAAGAAGGCGATGGCGCAGTTTGG
GCAGAAGATGCTGGAGACGGGCAAGTACGGGCAGGAAACGTTCCAGCTGTTCACCCACGAGGTGC
AGGAGAAGGGGGTGGGCAAGACGTTTGACGAGCGGTTCGGCAAGTTGTGGCTTGGCGACGAGCAG
AAGGCCGGGTACGAGGCGGTGCCCACGGCGTTTGGCTTGGACAAGCCGCAGCAGAAGTCGCTGAT
GCAGGGGATGGGGCTGAAGAAGGACGACGAGTGGGACGATTACTGATAGAGTAGTAGGATAATGT
ATGAGTAGTTTGGAGGTGGTGATGGAAGGTAGGGGATGGTGGTGG
Right flanking sequence: Indices 71832 -- 72331
ATATAGAGGACATGGGTTAGTGGATTGTGGTGTAGTAGTGGAGTCGTAGTGGTCAGTTGGTGTGA
TCTGTGGAATGTGCATCATCCGAGAAAGTAGCTTTTTGATGGTTGACTTTTCGATGGTTGACCTT
GGGTCAGGTTGGAAGTGGTGGAGGATGCTAGTTCAGCTTCAGGTCTGTTTGAGCTACAGCCTCAG
GTAAGGCTTTTACTCATTACTTTGGATAGATGTATAAGATATGTGAGCATTCCAGATCATAAGCT
AGAAATACATGAATATATTATTTAGCATTTAATCGTTAGTTTCAAAGATGGGGATCAACAGAATG
GTTGATTTGTAGTGCGTCGTTGAAGTAGATCAATGGATTGAGTCCAGAGTTTTACTTTTTATGAA
GACATTCCAAAGCAGCTCAGACTGGCCAGCGTAGTCGAGAGAAAGCCAGGAATACCCCTTACACA
CGAAAAACTCTAGTCTTTGTGCTTAACACCCAAAATGCCTAGTTT
Found at i:71952 original size:15 final size:15
Alignment explanation
Indices: 71928--71958 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
71918 GAGAAAGTAG
*
71928 CTTTTTGATGGTTGA
1 CTTTTCGATGGTTGA
71943 CTTTTCGATGGTTGA
1 CTTTTCGATGGTTGA
71958 C
1 C
71959 CTTGGGTCAG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.13, G:0.26, T:0.48
Consensus pattern (15 bp):
CTTTTCGATGGTTGA
Left flanking sequence: Indices 71428 -- 71927
GCGATGGCGCAGTTTGGGCAGAAGATGCTGGAGACGGGCAAGTACGGGCAGGAAACGTTCCAGCT
GTTCACCCACGAGGTGCAGGAGAAGGGGGTGGGCAAGACGTTTGACGAGCGGTTCGGCAAGTTGT
GGCTTGGCGACGAGCAGAAGGCCGGGTACGAGGCGGTGCCCACGGCGTTTGGCTTGGACAAGCCG
CAGCAGAAGTCGCTGATGCAGGGGATGGGGCTGAAGAAGGACGACGAGTGGGACGATTACTGATA
GAGTAGTAGGATAATGTATGAGTAGTTTGGAGGTGGTGATGGAAGGTAGGGGATGGTGGTGGGAA
TGGAAGCAGGGATTGGTTGCAGGGAATGGTAGGAGGAGAATGGTAGTAGGAGAATGGTATCAGGA
GAATGGTAGCAGGAATATAGAGGACATGGGTTAGTGGATTGTGGTGTAGTAGTGGAGTCGTAGTG
GTCAGTTGGTGTGATCTGTGGAATGTGCATCATCCGAGAAAGTAG
Right flanking sequence: Indices 71959 -- 72458
CTTGGGTCAGGTTGGAAGTGGTGGAGGATGCTAGTTCAGCTTCAGGTCTGTTTGAGCTACAGCCT
CAGGTAAGGCTTTTACTCATTACTTTGGATAGATGTATAAGATATGTGAGCATTCCAGATCATAA
GCTAGAAATACATGAATATATTATTTAGCATTTAATCGTTAGTTTCAAAGATGGGGATCAACAGA
ATGGTTGATTTGTAGTGCGTCGTTGAAGTAGATCAATGGATTGAGTCCAGAGTTTTACTTTTTAT
GAAGACATTCCAAAGCAGCTCAGACTGGCCAGCGTAGTCGAGAGAAAGCCAGGAATACCCCTTAC
ACACGAAAAACTCTAGTCTTTGTGCTTAACACCCAAAATGCCTAGTTTGAACTTTGAACCGCCCG
TTCATCGATTGTTTCGTCCTCTCGGCTGCAACCTGCCGCACTAGGAAGGTACGAGTCCCGAGGCA
AACCCCACCCAGGATTTACACTTTCTGTTGTAATATGATATGTCA
Found at i:73008 original size:15 final size:15
Alignment explanation
Indices: 72988--73063 Score: 143
Period size: 15 Copynumber: 5.0 Consensus size: 15
72978 GTTCTCCCTC
72988 CCCACTCTTCATATT
1 CCCACTCTTCATATT
73003 CCCACTCTTCATATT
1 CCCACTCTTCATATT
73018 CCCACTCTTCATATT
1 CCCACTCTTCATATT
73033 CCCACTCTTCATATT
1 CCCACTCTTCATATT
73048 CCCCACTCTTCATATT
1 -CCCACTCTTCATATT
73064 TTCTACCCTA
Statistics
Matches: 60, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
15 45 0.75
16 15 0.25
ACGTcount: A:0.20, C:0.41, G:0.00, T:0.39
Consensus pattern (15 bp):
CCCACTCTTCATATT
Left flanking sequence: Indices 72488 -- 72987
TAGTGTGTGGTACTCGCTTGTTAACTAAGCCCGCTTGGTACTGAAAGAATTGTCCTAAAGGTAAT
TAGTCTATACAACCTTGTGCGACCGTATAGCAAGTACGCCTTATTATCATAATAATCGACGAACC
GCTTCAGCTACTGGCTAAACCCATAGTTCGGACATTCATACCACTACCCGTCGTATTAGCACGAA
GATCAAAGCGGCATCTGCGAACGTGAGTTATTAATCAAGCGAATAGCCTATATGGCTACCCATTG
AAGTAAACAGATAAGGAATATGCGATAACTAACCCTCATCAGAGGCTAACCTACCGAGAAATCCA
ATCCACCAATTTTTCAACACTTTTATTAAATCTCTATACACTATTTTACCTTCACTCCCAAGCCC
ACAAAGTATCACTTTCATACCTATTTTTCCACTAAAATGACACACCTACCATCAATAGCTGGTTT
GGTGTAGCTTAATTTCATACCCACCCAACAGGATAGTTCTCCCTC
Right flanking sequence: Indices 73064 -- 73563
TTCTACCCTACACTTTTCTCAATGTGGATTGATCTATTTAACGGTGAGAGAAAACGCGATTAGAG
ATGAGGGAAATGAATGGGGTTATGCAGAAACGAGAGAAGCGCGCCTACTGGATCTGGCGCTTTTG
CTGGTCACGGGCCCACCGCGCCGCGTCCTTGGTCTTTTCGTCAAAGTACGGGTAGGCCCGCGCCC
GCCGGATAAAGTCGGTCACCCACGGCTGGGTGTACGCCTGCTTGAACTGGCGCCCGGGGAACATC
GCGGCAAGGTCGCCCAAGAGGCCCACCAGCGTGCGCACGGTGAGCTCGGCCAGCGCGAGCGCCGG
GTCCTGCGCCACCTGCTGGACGGCCGCAAAAATCGGCGCCACGTAGGGGTAGATCACGTCGGGCT
CGCTGGCAAACGCCGCCACCACCCCGGCGTAGCAGTCGAGCACCGCCTCGCGCACCAGCGCCACG
TACTCAAACAGGTCGATCAGCCCGTCGTCCTCGACCCCGGCCGCC
Found at i:76107 original size:36 final size:38
Alignment explanation
Indices: 76027--76107 Score: 100
Period size: 33 Copynumber: 2.2 Consensus size: 38
76017 GGGAGAGGTG
*
76027 GGTGGTAGTGGGAGAAGGAGAGTAGGATGGTGGGGGGT
1 GGTGGTAGTGGGAGAAGGAGAGTAGGAGGGTGGGGGGT
76065 GG-GGTAG-GGGAG-A-GAG-GTAGGAGGGTGGTAGGGGT
1 GGTGGTAGTGGGAGAAGGAGAGTAGGAGGGTGG--GGGGT
76100 GGTGGTAG
1 GGTGGTAG
76108 AGATGGTGGT
Statistics
Matches: 39, Mismatches: 1, Indels: 8
0.81 0.02 0.17
Matches are distributed among these distances:
33 11 0.28
34 3 0.08
35 8 0.21
36 10 0.26
37 5 0.13
38 2 0.05
ACGTcount: A:0.20, C:0.00, G:0.63, T:0.17
Consensus pattern (38 bp):
GGTGGTAGTGGGAGAAGGAGAGTAGGAGGGTGGGGGGT
Left flanking sequence: Indices 75527 -- 76026
GCTGGCGCCAGCGCTGGTGCTGGGCCGCCTTGACCTTGGCATCCTTCAGGGTGACCTGGTTTTTG
AGGCCCAACCCGGCCAAGATCCGCACCTCGGGTTTGGCGTCGGTGTTGGTGAGGGCCTGGGTGAG
GTACAAGAGGTACTGGTCGAAATGGGAGGCGGCCGCCTCGTTGAGCTGGACTTCCGCAGCCGTCC
GCACATTGACGTCGGGCGAGAACGCGTTCTCCAACACCGAAAGAATGTCCATGACCGATGGGTTT
GGGAGTAAAGTTTTTGTTGCGACGAAAATGAGCAACGCGCGTGGCAGGCGGAGGCCGCGACCGGG
CGGGCCGGGAGAAAGGCAGGGATTGTGAGGTGAAAGGGGGGTGGTTGGGTGGTGGAGAGGACGTC
GGGTGGGCTGGGTGGGCCTGGCCGGCGGCGGTGGCAAACCGTAGGGGCTAGGTCTGGGCCCGGGC
TGCTAACCCACGGCTGAGGTGGTGAAGGGTGAAGTGGGAGAGGTG
Right flanking sequence: Indices 76108 -- 76607
AGATGGTGGTGGTGGTGATGGTGGAGAGAGCTGAGAGAGAGGTGGAGAGAGGAGAGAGTTTAGCG
GAGAGGTGGTTTTTTTGTTGGTGGATCGTCTAGACGCGGTTAGGCCCGCGTCTGAATGGGGTAAC
CACTGCGCCTACTAGAGCAACAGTGGCGAAATGTAACGTGGTAGTGGGGGGATGGAGAAGGGAGG
ATGGTGGGGAAGAGGTGGGAATGAGATGATGGGGAAGGGGTGAGATGATGGAGACGATGGAGATG
GGGTGAGACGATCGGATGGTGATGGTGCAGACGATAAGCGAGGTGGCGAGAGAGACGGTGGAGAC
GAGAGACGAGGTGATGGTAGGGATGGTTACGAGATAGATCGGCGAGCAATGTAACGGGGTGGGCG
CTGCAACGGGGTGGGCGCTAGCAACGGAGTGGAGATAATGAACGGCTAAAGATAGCTGGCGAGAT
AGCAAGTTAGTTGTGTACACAGCTGTGCTGAAGAACGAGGTGATG
Found at i:76117 original size:15 final size:15
Alignment explanation
Indices: 76097--76131 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
76087 GGGTGGTAGG
76097 GGTGGTGGTAGAGAT
1 GGTGGTGGTAGAGAT
* *
76112 GGTGGTGGTGGTGAT
1 GGTGGTGGTAGAGAT
76127 GGTGG
1 GGTGG
76132 AGAGAGCTGA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.11, C:0.00, G:0.60, T:0.29
Consensus pattern (15 bp):
GGTGGTGGTAGAGAT
Left flanking sequence: Indices 75597 -- 76096
CAACCCGGCCAAGATCCGCACCTCGGGTTTGGCGTCGGTGTTGGTGAGGGCCTGGGTGAGGTACA
AGAGGTACTGGTCGAAATGGGAGGCGGCCGCCTCGTTGAGCTGGACTTCCGCAGCCGTCCGCACA
TTGACGTCGGGCGAGAACGCGTTCTCCAACACCGAAAGAATGTCCATGACCGATGGGTTTGGGAG
TAAAGTTTTTGTTGCGACGAAAATGAGCAACGCGCGTGGCAGGCGGAGGCCGCGACCGGGCGGGC
CGGGAGAAAGGCAGGGATTGTGAGGTGAAAGGGGGGTGGTTGGGTGGTGGAGAGGACGTCGGGTG
GGCTGGGTGGGCCTGGCCGGCGGCGGTGGCAAACCGTAGGGGCTAGGTCTGGGCCCGGGCTGCTA
ACCCACGGCTGAGGTGGTGAAGGGTGAAGTGGGAGAGGTGGGTGGTAGTGGGAGAAGGAGAGTAG
GATGGTGGGGGGTGGGGTAGGGGAGAGAGGTAGGAGGGTGGTAGG
Right flanking sequence: Indices 76132 -- 76631
AGAGAGCTGAGAGAGAGGTGGAGAGAGGAGAGAGTTTAGCGGAGAGGTGGTTTTTTTGTTGGTGG
ATCGTCTAGACGCGGTTAGGCCCGCGTCTGAATGGGGTAACCACTGCGCCTACTAGAGCAACAGT
GGCGAAATGTAACGTGGTAGTGGGGGGATGGAGAAGGGAGGATGGTGGGGAAGAGGTGGGAATGA
GATGATGGGGAAGGGGTGAGATGATGGAGACGATGGAGATGGGGTGAGACGATCGGATGGTGATG
GTGCAGACGATAAGCGAGGTGGCGAGAGAGACGGTGGAGACGAGAGACGAGGTGATGGTAGGGAT
GGTTACGAGATAGATCGGCGAGCAATGTAACGGGGTGGGCGCTGCAACGGGGTGGGCGCTAGCAA
CGGAGTGGAGATAATGAACGGCTAAAGATAGCTGGCGAGATAGCAAGTTAGTTGTGTACACAGCT
GTGCTGAAGAACGAGGTGATGTAGGGTTACGGGTGGAAGGAGAGA
Found at i:76162 original size:19 final size:20
Alignment explanation
Indices: 76127--76165 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 20
76117 TGGTGGTGAT
76127 GGTGGAGAGAGCTGAGAGAGA
1 GGTGGAGAGAGC-GAGAGAGA
76148 GGTGGAGAGAG-GAGAGAG
1 GGTGGAGAGAGCGAGAGAG
76166 TTTAGCGGAG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 7 0.39
21 11 0.61
ACGTcount: A:0.33, C:0.03, G:0.56, T:0.08
Consensus pattern (20 bp):
GGTGGAGAGAGCGAGAGAGA
Left flanking sequence: Indices 75627 -- 76126
GGCGTCGGTGTTGGTGAGGGCCTGGGTGAGGTACAAGAGGTACTGGTCGAAATGGGAGGCGGCCG
CCTCGTTGAGCTGGACTTCCGCAGCCGTCCGCACATTGACGTCGGGCGAGAACGCGTTCTCCAAC
ACCGAAAGAATGTCCATGACCGATGGGTTTGGGAGTAAAGTTTTTGTTGCGACGAAAATGAGCAA
CGCGCGTGGCAGGCGGAGGCCGCGACCGGGCGGGCCGGGAGAAAGGCAGGGATTGTGAGGTGAAA
GGGGGGTGGTTGGGTGGTGGAGAGGACGTCGGGTGGGCTGGGTGGGCCTGGCCGGCGGCGGTGGC
AAACCGTAGGGGCTAGGTCTGGGCCCGGGCTGCTAACCCACGGCTGAGGTGGTGAAGGGTGAAGT
GGGAGAGGTGGGTGGTAGTGGGAGAAGGAGAGTAGGATGGTGGGGGGTGGGGTAGGGGAGAGAGG
TAGGAGGGTGGTAGGGGTGGTGGTAGAGATGGTGGTGGTGGTGAT
Right flanking sequence: Indices 76166 -- 76665
TTTAGCGGAGAGGTGGTTTTTTTGTTGGTGGATCGTCTAGACGCGGTTAGGCCCGCGTCTGAATG
GGGTAACCACTGCGCCTACTAGAGCAACAGTGGCGAAATGTAACGTGGTAGTGGGGGGATGGAGA
AGGGAGGATGGTGGGGAAGAGGTGGGAATGAGATGATGGGGAAGGGGTGAGATGATGGAGACGAT
GGAGATGGGGTGAGACGATCGGATGGTGATGGTGCAGACGATAAGCGAGGTGGCGAGAGAGACGG
TGGAGACGAGAGACGAGGTGATGGTAGGGATGGTTACGAGATAGATCGGCGAGCAATGTAACGGG
GTGGGCGCTGCAACGGGGTGGGCGCTAGCAACGGAGTGGAGATAATGAACGGCTAAAGATAGCTG
GCGAGATAGCAAGTTAGTTGTGTACACAGCTGTGCTGAAGAACGAGGTGATGTAGGGTTACGGGT
GGAAGGAGAGAGACAAGAGTCGAGAGAGACGAGAGAGACGTGAAA
Found at i:76507 original size:17 final size:18
Alignment explanation
Indices: 76485--76529 Score: 74
Period size: 17 Copynumber: 2.6 Consensus size: 18
76475 CGAGCAATGT
76485 AACGGGGTGGGCGCT-GC
1 AACGGGGTGGGCGCTAGC
76502 AACGGGGTGGGCGCTAGC
1 AACGGGGTGGGCGCTAGC
*
76520 AACGGAGTGG
1 AACGGGGTGG
76530 AGATAATGAA
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
17 15 0.58
18 11 0.42
ACGTcount: A:0.18, C:0.20, G:0.51, T:0.11
Consensus pattern (18 bp):
AACGGGGTGGGCGCTAGC
Left flanking sequence: Indices 75985 -- 76484
TAACCCACGGCTGAGGTGGTGAAGGGTGAAGTGGGAGAGGTGGGTGGTAGTGGGAGAAGGAGAGT
AGGATGGTGGGGGGTGGGGTAGGGGAGAGAGGTAGGAGGGTGGTAGGGGTGGTGGTAGAGATGGT
GGTGGTGGTGATGGTGGAGAGAGCTGAGAGAGAGGTGGAGAGAGGAGAGAGTTTAGCGGAGAGGT
GGTTTTTTTGTTGGTGGATCGTCTAGACGCGGTTAGGCCCGCGTCTGAATGGGGTAACCACTGCG
CCTACTAGAGCAACAGTGGCGAAATGTAACGTGGTAGTGGGGGGATGGAGAAGGGAGGATGGTGG
GGAAGAGGTGGGAATGAGATGATGGGGAAGGGGTGAGATGATGGAGACGATGGAGATGGGGTGAG
ACGATCGGATGGTGATGGTGCAGACGATAAGCGAGGTGGCGAGAGAGACGGTGGAGACGAGAGAC
GAGGTGATGGTAGGGATGGTTACGAGATAGATCGGCGAGCAATGT
Right flanking sequence: Indices 76530 -- 77029
AGATAATGAACGGCTAAAGATAGCTGGCGAGATAGCAAGTTAGTTGTGTACACAGCTGTGCTGAA
GAACGAGGTGATGTAGGGTTACGGGTGGAAGGAGAGAGACAAGAGTCGAGAGAGACGAGAGAGAC
GTGAAAGGCTTTTGGCGGTGTGACGAAATCCAGTCAAATGGAGCCACCCGTAAGGCACCTTTTTG
GCCACCGTTTAGGCCACCTGGTTGTTGCAGACAAAAACGGATCAATTGACGCACGTAGCCACCGC
CAATTTGCCAAGAAGCAAGCCGGATCACACCCAGTTCGTCCACCGGTGCCTTGACCAGCTAACAA
TGTGCCATGCCCGCTAACATTGTGCCACGCCAGCTAACAATTCACTATGTAACAACGCATCCACA
CGAAATACAATATGAAATACACTATATTTCACCACTGTCTCGATACACCCACTACTCTTCATCAA
TTTCCTCCTCTTGCTCTGCCACCCTTCACTCTCCTCGCCACGCCT
Found at i:76872 original size:20 final size:20
Alignment explanation
Indices: 76844--76895 Score: 77
Period size: 20 Copynumber: 2.6 Consensus size: 20
76834 GGTGCCTTGA
*
76844 CCAGCTAACAATGTGCCATG
1 CCAGCTAACAATGTGCCACG
* *
76864 CCCGCTAACATTGTGCCACG
1 CCAGCTAACAATGTGCCACG
76884 CCAGCTAACAAT
1 CCAGCTAACAAT
76896 TCACTATGTA
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.29, C:0.35, G:0.17, T:0.19
Consensus pattern (20 bp):
CCAGCTAACAATGTGCCACG
Left flanking sequence: Indices 76344 -- 76843
GAGATGATGGAGACGATGGAGATGGGGTGAGACGATCGGATGGTGATGGTGCAGACGATAAGCGA
GGTGGCGAGAGAGACGGTGGAGACGAGAGACGAGGTGATGGTAGGGATGGTTACGAGATAGATCG
GCGAGCAATGTAACGGGGTGGGCGCTGCAACGGGGTGGGCGCTAGCAACGGAGTGGAGATAATGA
ACGGCTAAAGATAGCTGGCGAGATAGCAAGTTAGTTGTGTACACAGCTGTGCTGAAGAACGAGGT
GATGTAGGGTTACGGGTGGAAGGAGAGAGACAAGAGTCGAGAGAGACGAGAGAGACGTGAAAGGC
TTTTGGCGGTGTGACGAAATCCAGTCAAATGGAGCCACCCGTAAGGCACCTTTTTGGCCACCGTT
TAGGCCACCTGGTTGTTGCAGACAAAAACGGATCAATTGACGCACGTAGCCACCGCCAATTTGCC
AAGAAGCAAGCCGGATCACACCCAGTTCGTCCACCGGTGCCTTGA
Right flanking sequence: Indices 76896 -- 77395
TCACTATGTAACAACGCATCCACACGAAATACAATATGAAATACACTATATTTCACCACTGTCTC
GATACACCCACTACTCTTCATCAATTTCCTCCTCTTGCTCTGCCACCCTTCACTCTCCTCGCCAC
GCCTTCATCCTCCCACCCCTACCTCCTCCCATCTCCTCTCCTTCCACCTCTCCTTTCTCCTCTCT
CCCACCACCCACCTGCACACTCGTGCTGCACCTCGCCACCAAAACCGCGCGCACCTCCACTCGTC
CTCACCATGGAGGACCCACTCAGCTTGCACGACGACGACGTGTACCTCAAGCTCAAGACGCTCCA
GCGCGAGTTGGACTTGCTCCAGCTCCAGGAGGACTACATCAAAGACGAGCAGCGCCACCTCAAAC
GCGAACTCGTGCGCGCACAGGAAGAAGTGAAGCGCATCAAGTCGGTGCCGCTCGTCATCGGGCAA
TTCTTGGAGCCCATCGACGAAAACACCGGCATTGTGTCGCTGACC
Found at i:79297 original size:15 final size:15
Alignment explanation
Indices: 79277--79309 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
79267 GCTCCAGCTT
79277 CAGCGAGCTTACAAC
1 CAGCGAGCTTACAAC
79292 CAGCGAGCTTACAAC
1 CAGCGAGCTTACAAC
79307 CAG
1 CAG
79310 TGAGGTAAAG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.33, C:0.33, G:0.21, T:0.12
Consensus pattern (15 bp):
CAGCGAGCTTACAAC
Left flanking sequence: Indices 78777 -- 79276
TAGGATCTACGTGCTCAAGCCGACTAGGTTTCGTATTTGTTTCACATTCCGTAACCCCACGCGAG
TGATACACGACTCAGCCGTGCTCAAAAAGTGTAACTGACAACTGTCAAGATTGTTACTGACGACT
GTCACCGCTATGACTGGTTTCAATGATGGAGTCAGTGGGATGGTATACATTCTCGCATCCCACAC
GCCGTCGCAGACCGCTCAACGCTCAGCCTCAGGTCTCCACTTGTTTATGTTTCGTAAATAGAACT
TCGTATCAACAAAGCCTCCGAACAATGTCCGAAAATGATTGGAGCCTGTGAAACCACTCGTTGTA
TAAATAGCCTTTGGCCATCCTCACACCCACCAACATAACCCTAAATCATGTGGACCCAGCTCATT
TATCTTACCCTCTTCACTTTAACCGTCGAGGCTACTCAGGCTAAGGGAAGCAAGTACAAAACTAG
ACGCCATCGTCCCAAGCACGACGAGGAGAGCTCCAGCTCCAGCTT
Right flanking sequence: Indices 79310 -- 79809
TGAGGTAAAGACTACGTCTTTTACTCTGGCTTCCAGAATTGTGTCGTCAACCGTTTCTGGCGTCG
GTTTGGCCACCACAGGCGCCGGTGGTCTTGCTATGGGCGCCCTCGGTGTCGTCGCCGGTATGTTG
CTTTTGTGACTGGCGAAATCATTCCCCGCCCCGGATTACAGAACCCTTAGATGTACAGAATATGA
TAATACATGTGAATCAGGGGTACGCTTCCTCGGATTGTGTCACCCGTATGATCCATTGTTCCATA
GAATTCCAATACCTCATTTGGGTGTGCGTGTCCCGCAAGTAATTGCTAAAATTTACGTTTGTCAC
TTTTCGAACCGAGTCAATGGGCCCAGACTGGCTTCGACCCACGTTTTAACACAATCTTTATTTGC
AGCCATAGTCACCGCTGACTAACCATGTGCCGGAATGACACCCGTCTTCTCCGAGTTTCCTGCAC
ATTACATGGTTCCATAAGTGCGGTTACTAAAATACGTCAAATCAA
Found at i:97470 original size:18 final size:18
Alignment explanation
Indices: 97447--97483 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
97437 TGGTGTGAAG
*
97447 GGGTGAAGGTGGTGAATC
1 GGGTGAAGGTAGTGAATC
*
97465 GGGTGAATGTAGTGAATC
1 GGGTGAAGGTAGTGAATC
97483 G
1 G
97484 CCCTGGTTGG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.24, C:0.05, G:0.46, T:0.24
Consensus pattern (18 bp):
GGGTGAAGGTAGTGAATC
Left flanking sequence: Indices 96947 -- 97446
CAATGACAAAGTGGGGGCGCTTCTGGAGCGCCACCTGCTGGTCGATCATCAGCTCACCACCGACA
ATGACGGCGATCTTGATGTTCATCGCCGCTCCGAGGGCGGCAAATTGCTCAGCAATCTGCATGGC
AAGCTCTCGGGTGGGGGTGAGAACGAGTCCGAAGATGCCAAAGGGGTCCTCCAGCCACTGGGTGA
GCATGGGTGCGGCAAATGCGATGGTCTTACCGGAACCGGTCTTGGCTCCACCAATACAGTCGTGG
CCCTCGAGGATCTTGGGGATGCACGCGCGTTGAATCGCGGTGGGGGCAAAGATCTTCATGGCCTC
GAGCAGCTCGATGAGCCACTTGGCCACGCCAGCCTCTTTGAATGACATTAGGGTGGTGGTTATCG
GAGGGTTCGATGTACGCGATGGCTGCGATGAGGGGTGTGTGCAGGAGGGTGGAGCGAATCAAGGG
AAGGAGGATGGGAGAAAAGTAGCTAGGCGAGTGGTTGGTGTGAAG
Right flanking sequence: Indices 97484 -- 97983
CCCTGGTTGGTTGTTTTCTCCTTTCGGGAATGCTCTACCCATAAATTGGTCAGACTATGAAGACC
AGACAACAAAGACAACTACGAGGTAACCGACACCAATTACGAAGAGAACTACATAGACTTTGCCA
TAAACACTGCCTGCTGACCAACCGCAAGCTACTATAAGTGCCCCAACAGCTACATATCCCCCGTT
CCCAACCACTCCGTCCTCCACCCACCCATATTTTTCGTGCGGCGCAAACATCCTCATGATCCGTA
CCCTGTTGGCTCGCCCGTGGCGTGCCATTGGGACGCCCACACGACACTTTTTCACCCGTTCGCGG
GTCCTCTACGAGTACCCCGAAGACGAGCCCGCCCTCACCGAGGACGACGGGCCCGCCTACCTCCC
GGAATCGCTGTATGAGCTCCGGATCAAGCAGGAAGGCGAACAAATACCCCCCATCACGGGCTCGG
TACCTGCTGGAAAGGAGAAACTCGAGTACCGCAGCTTGGGGCCCG
Found at i:104535 original size:15 final size:16
Alignment explanation
Indices: 104494--104542 Score: 73
Period size: 16 Copynumber: 3.1 Consensus size: 16
104484 TGATCTTGGA
* *
104494 GGTGAACTTAAGTCTC
1 GGTGAACTTGAGTCTG
104510 GGTGAACTTGAGTCTG
1 GGTGAACTTGAGTCTG
104526 GGTG-ACTTGAGTCTG
1 GGTGAACTTGAGTCTG
104541 GG
1 GG
104543 CAAATTAGAG
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
15 13 0.42
16 18 0.58
ACGTcount: A:0.18, C:0.14, G:0.37, T:0.31
Consensus pattern (16 bp):
GGTGAACTTGAGTCTG
Left flanking sequence: Indices 103994 -- 104493
GACTTCCACAAGGATTTTGGCAAGGGCTCGTACGGGTCGTCCTACGGGATGCCCCTGGCCCACTC
GCAGTTTGCGGGCTTCTTTGCCGCGTACTTCTTGTGTGTGGTGCTTACCAAGGTGCCCGTGTCGA
CGCTTTCCAAGGTGGTGGTGAGTGCTGGTCTTCTCACCGTGGGCTTCCTCGTCCCGTTTCTGAGG
GTCTACCTCATGTACCACACCTGGCCCCAGGTGGCTGTGGGGGTGATGCTTGGGGTGGCTCTTGG
GCTTGTGTACTTTGTCGTGGCGTCGTTTGCCCGCCAGTTTGGGGTGGTGGACTGGGTGTTGCGCT
GGCCTATTGTCCGGTGGTTCTCGGTGAAGGACGGATACTACCACAACTACCAGAGCTTTGAGCAG
GAGTTCCAGGCGGTGGAGGCCGCGAAGGCGAAGAAGGCCGCCAAGAAGGCATTATAGATTATAGA
TATAGATTGTTCGAGGGAGAGTCTCCACGTAGGTTTGATCTTGGA
Right flanking sequence: Indices 104543 -- 105042
CAAATTAGAGACTGGGTGGACTTGGGTACTTCGTGTGGTATGACCCTGTCGAATAAACCATGGGC
CCTGCCCGGCTAGTGTATCTACTTGAGAGCCCTACTCCCCCCAAACCCTTGCTTCTGAATCTATT
GTCGTGTCTCGTCTATCCATGCGGTCTATTTACATGATGTCAAGGAACCCGTCGTCCTCGGCCGT
TTCCGTGCGCAACTCGGCAATTCTCAGGGCCCGCTCACGCTCCACCCGCTTGTAATGAGACTTTT
TGCGCTCGTTGTACCACTTCATGAGCCTGCGCTTCATCCCCGACCCCAAACTCCACTGGTTGATG
ATCTCGTGGCAGTAGTTGGGCATGAGCTGGCGTGCGTGGTGCTCAACAAGCTGCATGAGCGCCAT
CAGATACACCTGGCTGATCTCCCGCTGGGCCAGCGTCACGTGGTGTTCTGTCAGCGGGCGGGCGT
TGAACGACGCGGGAGCGATCGACACCTCGTGGTGGCGGGCAGCGA
Found at i:109930 original size:19 final size:20
Alignment explanation
Indices: 109893--109938 Score: 85
Period size: 19 Copynumber: 2.4 Consensus size: 20
109883 ACGCTTCGCC
109893 CACTGAAAAACACTCCACT-
1 CACTGAAAAACACTCCACTG
109912 CACTGAAAAACACTCCACTG
1 CACTGAAAAACACTCCACTG
109932 CACTGAA
1 CACTGAA
109939 GAACGCCATA
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
19 19 0.73
20 7 0.27
ACGTcount: A:0.41, C:0.35, G:0.09, T:0.15
Consensus pattern (20 bp):
CACTGAAAAACACTCCACTG
Left flanking sequence: Indices 109393 -- 109892
CGCGAGGAGCGGATTGCCCACGCCAAGGAGGGCCGCGAGGACCGCGAGTTCGGTCTGCGCAAGGG
CAAGCGCGATGCTCCCCACTCTACTACCAACAAGGAGAAGGCTCGCAAGAAGAACTTTATCATGA
CTATCCACAAGCGCGCGGTGTCGGGCAAGCAGAAGATGTCGTTGCGCGACCGCCAGAAGGTGTTG
CGGGCCCACGTCGACCGCATGAAGCGTGGCGGGCGTTCCGGGAACTTTTAGGCTACTAGTATTTA
TCGCATCTAATAGATTGACTTTCGTATCGCGCCTGGAGCGAGAACAATAGACTAAAGGCGATCGA
GCCGGTATCGGAGATAGCAGCGCGTCAGAACAACAATAGTCGTGACGGTGGCCAACGTAGTTTTG
TGGCAAGGGCTTTGGCTTATTTCATTGTTGAAGAGTCTAGTAGGGTTCTTCCAAACTCAACAATG
CTTACTTAATGCTAAAAATGCTCCCTACGCTCAAAACGCTTCGCC
Right flanking sequence: Indices 109939 -- 110438
GAACGCCATACTAAAAAATGCTCCCTAGCCTTCTACCCTACACCTCTTCTATATCACACAAATTG
GTATTTAATACATCAAGAATTACATGAACATTACAAGCCATCTAGGCACAGGGTGATCGTCACTT
CTTTTCCTTCTTCTTCTTTTTGTCCTTCTTCTCCTTCTTGCCCTCGGTCTTGGCCTTCTTCTTCT
TCTTGTCGTCGCCGTCGTCCGCAGGCTCCTCCACCTTGGGCTCGATAGTCACCTCGGCCGTGGTG
TCCGCAGCCTCAGCGCCCTCCTTGCCCTCGTTGTACTTGACCATCTCCTTCTGGTAGTCGGCCCA
CAACTTGGAGTACCGCTCCTTGTAACGGGCCTTCTCCGCATCCAGAAGCTCGGCCCACAATTTCA
GCAACAGCTGCAGCAACTCCACGTTCAGCAACGGCTCCTCACCCTTGGTCTGTCTCTCCTGGATC
AACTGGGGGCGCACCTCGTCGCGGAACATGAAAAACAGTGTCAAC
Found at i:112924 original size:12 final size:12
Alignment explanation
Indices: 112907--112962 Score: 67
Period size: 12 Copynumber: 4.7 Consensus size: 12
112897 GTTTGGGAAC
112907 GCTGCCCCCGCT
1 GCTGCCCCCGCT
112919 GCTGCCCCCGCT
1 GCTGCCCCCGCT
* *
112931 GCCGCTCCCGCT
1 GCTGCCCCCGCT
* * *
112943 GCTGCTCCAGCC
1 GCTGCCCCCGCT
112955 GCTGCCCC
1 GCTGCCCC
112963 GCAAGCTGCC
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
12 38 1.00
ACGTcount: A:0.02, C:0.57, G:0.25, T:0.16
Consensus pattern (12 bp):
GCTGCCCCCGCT
Left flanking sequence: Indices 112407 -- 112906
TTACCCGTGACGCATGGATTTTTAAGCGATCGCCGAAGAGTTTAACCGAACCAACGGCTACTGAG
GGGCCCAGACACGCCTTACAACGTGTCAACCACACGTAGACAGCAGATCTAAAGCCAGCAGTCAC
CATTAGTCCATCAAAAACCCCTCCTAGCCTCTTCTCCACCCCCCAACGCCGCCCACGGGCTTGTC
GATCTACGCCCGCTGTCGTAATAGCATGCAGTACTAGGCCAAGATTTACCTAATCTGGAAATAAT
CGGAATGTAGACAATTGTGCGAATGATAGTTGAAACCTCGCTTATATATAATGATTGCCCCGGCG
TTCTTTTCCTTTCTCCACTCCACTCCTTAGTCTTCTTCCCCTCCTTAGCTCGGCTCCGATGCAGA
TTATCGAAGGATTGGTCCTCTTGCAAGTAGCTGGTCTACTTGCAGCCGTGGGTGCTTTGCCCATT
GACCACAAACGGGACGCTGGTCTCTTTGACGAATTGTTTGGGAAC
Right flanking sequence: Indices 112963 -- 113462
GCAAGCTGCCCCGCAAACCATCTACCACACCGTGTACGCTGCCCCCACCCCAGCTGCCCAAGCTG
CCCAGGCTGCTAAGCCCTCCGTGGCTCCCGCACCTGCCCAGCCGGCTGCTGCCCCCGCTTCTTCC
CTGGCGTCATCAGGGAAGGGCTTTTTCGGCAACTTATTCGGTTCCCTCTTTGGGGGGAGCGGTTC
CACCACTACCCAGACCACCGCTCCGGCTCAGGCGGCTCCTGCCACCAAGCCTGCTGCCCAGCCTG
CCTCCCAGGCTCCCCAGACGAGCCCAGCCTCGTCTCCTAAGAGCTCCTCCGGAGGGTTCTTCTCC
AACTTGTTTGGAGGCCTCTTCGGTGGTAGCTCGTCGAGCTCGTCGAGCTCTTCGAACGCCCAGTC
GCCTCAGCCCGCCACCCCTGCTCTGACTGGCTCCATTAATGGTGGTTCCAGCGCGGGCTCCGCTC
CCTCCCCTGCAGTCACGGACAACCGTGGTGGTGCGGGTAACGGGG
Found at i:117431 original size:30 final size:28
Alignment explanation
Indices: 117397--117487 Score: 85
Period size: 30 Copynumber: 3.1 Consensus size: 28
117387 GAAGGATAGG
*
117397 GAAGAGTAAGGTCAAAAGATAGTAAGAGTC
1 GAAGAATAAGGTC-AAAGATA-TAAGAGTC
* **
117427 GAAGAATAAGCTCGATGGATAATAAGAGTC
1 GAAGAATAAGGTC-AAAGAT-ATAAGAGTC
* *
117457 GAAGAAAAAGGTCGAAGA-ATAAGAGTC
1 GAAGAATAAGGTCAAAGATATAAGAGTC
117484 GAAG
1 GAAG
117488 GATGAGAATC
Statistics
Matches: 50, Mismatches: 10, Indels: 5
0.77 0.15 0.08
Matches are distributed among these distances:
27 13 0.26
29 2 0.04
30 34 0.68
31 1 0.02
ACGTcount: A:0.47, C:0.08, G:0.30, T:0.15
Consensus pattern (28 bp):
GAAGAATAAGGTCAAAGATATAAGAGTC
Left flanking sequence: Indices 116897 -- 117396
CTGCAAACGAGAGACCAGACGACGGCGTGTACGTGCTGCCCAAGCGGAAGCGCACCCACGACATC
CAGGAGCTCTACAACTTGCTGAGCGCCAAGGAGAAGGAGAAGCAGCTCGCGAAGCTGCCCGAGGA
GCGTCGCCAGAAGCGTGACAAGTGGCTGGCCACCGTAGCCCTGCTCCGCAACCACCAGCGCCTCC
AGGCGACGGCGCTGGCCGCAGACTCGTTCACGAAGGCATTGAACTCCGCCCTGTCACTGACACAC
GCGCTGCCGTTCAACAAGGTGATCAGCTTGGATCTGGGGTTCTCGACCGACGAGTCGGACGTGGA
GATCGAGTTTGGCAACGAAGACGCCAAGAAGGACTTTCAGGCTCGGCTCCAGGCATTACGGAAAG
AAAAGAACACATAGGGAACAAACACAGGGATTTAGGGGTAGATGGAGGTAGGGTAGAACGATTAG
GGATGGGGTAAAGAGTTGAAGATTAAGAAAGGGTTGAAGGATAGG
Right flanking sequence: Indices 117488 -- 117987
GATGAGAATCGATCAAAGTACTGATAAAGTATCAGGTGCATTTGGCTATTTATTATGCTAGGCTC
TATAATTACTCGTTGCCAAACCACGTGTCACCCAAGTACCGGTACAACGCCTGGGTGGCCGGGTC
GACCTCCACGTACTCACCGTAGACAGTGTTGTCGGTCTCCTTGCCGTCGCTCCAGCTCTTACCAC
CGGCCTGCGAGTAGGCACACCACATGTACAGCAAACAGTACCCACGCTCCCAGAACCACCCGTTG
CCGCTCTCCTCGCCCTCGTCGTTGGGGTGTCTTTGGTCCTGAGGGTCCAAATGAGGCGGCACGAC
AATGGCTTCGATGCGGAGGGGCCCCTCGTAGAACACCTTGAAGTCCTTGAGGTTGGAGATCCACT
TGAAACGCGACCCGCGGTTGAAGTCGCCCTCCAGCGAGATCCGCCCCACCTTCAGACACGTCTGG
AACCCCAGGTTGAACCAGGCAAGCTGGCGGTCCTGGCCCGACAAG
Found at i:117472 original size:13 final size:14
Alignment explanation
Indices: 117450--117487 Score: 60
Period size: 13 Copynumber: 2.8 Consensus size: 14
117440 GATGGATAAT
117450 AAGAGTCGAAGAAA
1 AAGAGTCGAAGAAA
*
117464 AAG-GTCGAAGAAT
1 AAGAGTCGAAGAAA
117477 AAGAGTCGAAG
1 AAGAGTCGAAG
117488 GATGAGAATC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
13 12 0.55
14 10 0.45
ACGTcount: A:0.50, C:0.08, G:0.32, T:0.11
Consensus pattern (14 bp):
AAGAGTCGAAGAAA
Left flanking sequence: Indices 116950 -- 117449
ACCCACGACATCCAGGAGCTCTACAACTTGCTGAGCGCCAAGGAGAAGGAGAAGCAGCTCGCGAA
GCTGCCCGAGGAGCGTCGCCAGAAGCGTGACAAGTGGCTGGCCACCGTAGCCCTGCTCCGCAACC
ACCAGCGCCTCCAGGCGACGGCGCTGGCCGCAGACTCGTTCACGAAGGCATTGAACTCCGCCCTG
TCACTGACACACGCGCTGCCGTTCAACAAGGTGATCAGCTTGGATCTGGGGTTCTCGACCGACGA
GTCGGACGTGGAGATCGAGTTTGGCAACGAAGACGCCAAGAAGGACTTTCAGGCTCGGCTCCAGG
CATTACGGAAAGAAAAGAACACATAGGGAACAAACACAGGGATTTAGGGGTAGATGGAGGTAGGG
TAGAACGATTAGGGATGGGGTAAAGAGTTGAAGATTAAGAAAGGGTTGAAGGATAGGGAAGAGTA
AGGTCAAAAGATAGTAAGAGTCGAAGAATAAGCTCGATGGATAAT
Right flanking sequence: Indices 117488 -- 117987
GATGAGAATCGATCAAAGTACTGATAAAGTATCAGGTGCATTTGGCTATTTATTATGCTAGGCTC
TATAATTACTCGTTGCCAAACCACGTGTCACCCAAGTACCGGTACAACGCCTGGGTGGCCGGGTC
GACCTCCACGTACTCACCGTAGACAGTGTTGTCGGTCTCCTTGCCGTCGCTCCAGCTCTTACCAC
CGGCCTGCGAGTAGGCACACCACATGTACAGCAAACAGTACCCACGCTCCCAGAACCACCCGTTG
CCGCTCTCCTCGCCCTCGTCGTTGGGGTGTCTTTGGTCCTGAGGGTCCAAATGAGGCGGCACGAC
AATGGCTTCGATGCGGAGGGGCCCCTCGTAGAACACCTTGAAGTCCTTGAGGTTGGAGATCCACT
TGAAACGCGACCCGCGGTTGAAGTCGCCCTCCAGCGAGATCCGCCCCACCTTCAGACACGTCTGG
AACCCCAGGTTGAACCAGGCAAGCTGGCGGTCCTGGCCCGACAAG
Found at i:117485 original size:27 final size:28
Alignment explanation
Indices: 117419--117487 Score: 86
Period size: 30 Copynumber: 2.4 Consensus size: 28
117409 CAAAAGATAG
* *
117419 TAAGAGTCGAAGAATAAGCTCGATGGATAA
1 TAAGAGTCGAAGAAAAAGCTCGA--GAGAA
*
117449 TAAGAGTCGAAGAAAAAGGTCGA-AGAA
1 TAAGAGTCGAAGAAAAAGCTCGAGAGAA
117476 TAAGAGTCGAAG
1 TAAGAGTCGAAG
117488 GATGAGAATC
Statistics
Matches: 36, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
27 15 0.42
30 21 0.58
ACGTcount: A:0.46, C:0.09, G:0.29, T:0.16
Consensus pattern (28 bp):
TAAGAGTCGAAGAAAAAGCTCGAGAGAA
Left flanking sequence: Indices 116919 -- 117418
CGGCGTGTACGTGCTGCCCAAGCGGAAGCGCACCCACGACATCCAGGAGCTCTACAACTTGCTGA
GCGCCAAGGAGAAGGAGAAGCAGCTCGCGAAGCTGCCCGAGGAGCGTCGCCAGAAGCGTGACAAG
TGGCTGGCCACCGTAGCCCTGCTCCGCAACCACCAGCGCCTCCAGGCGACGGCGCTGGCCGCAGA
CTCGTTCACGAAGGCATTGAACTCCGCCCTGTCACTGACACACGCGCTGCCGTTCAACAAGGTGA
TCAGCTTGGATCTGGGGTTCTCGACCGACGAGTCGGACGTGGAGATCGAGTTTGGCAACGAAGAC
GCCAAGAAGGACTTTCAGGCTCGGCTCCAGGCATTACGGAAAGAAAAGAACACATAGGGAACAAA
CACAGGGATTTAGGGGTAGATGGAGGTAGGGTAGAACGATTAGGGATGGGGTAAAGAGTTGAAGA
TTAAGAAAGGGTTGAAGGATAGGGAAGAGTAAGGTCAAAAGATAG
Right flanking sequence: Indices 117488 -- 117987
GATGAGAATCGATCAAAGTACTGATAAAGTATCAGGTGCATTTGGCTATTTATTATGCTAGGCTC
TATAATTACTCGTTGCCAAACCACGTGTCACCCAAGTACCGGTACAACGCCTGGGTGGCCGGGTC
GACCTCCACGTACTCACCGTAGACAGTGTTGTCGGTCTCCTTGCCGTCGCTCCAGCTCTTACCAC
CGGCCTGCGAGTAGGCACACCACATGTACAGCAAACAGTACCCACGCTCCCAGAACCACCCGTTG
CCGCTCTCCTCGCCCTCGTCGTTGGGGTGTCTTTGGTCCTGAGGGTCCAAATGAGGCGGCACGAC
AATGGCTTCGATGCGGAGGGGCCCCTCGTAGAACACCTTGAAGTCCTTGAGGTTGGAGATCCACT
TGAAACGCGACCCGCGGTTGAAGTCGCCCTCCAGCGAGATCCGCCCCACCTTCAGACACGTCTGG
AACCCCAGGTTGAACCAGGCAAGCTGGCGGTCCTGGCCCGACAAG
Found at i:120718 original size:17 final size:17
Alignment explanation
Indices: 120696--120745 Score: 91
Period size: 17 Copynumber: 2.9 Consensus size: 17
120686 GTGATACACT
120696 ACAAAATCAACACAGTG
1 ACAAAATCAACACAGTG
120713 ACAAAATCAACACAGTG
1 ACAAAATCAACACAGTG
*
120730 ACTAAATCAACACAGT
1 ACAAAATCAACACAGT
120746 TGGCGCCACA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
17 32 1.00
ACGTcount: A:0.52, C:0.24, G:0.10, T:0.14
Consensus pattern (17 bp):
ACAAAATCAACACAGTG
Left flanking sequence: Indices 120196 -- 120695
GAACTCGTGTGCGATCGCCGGTACTCAAAGGAACCTGGGTGTGGAGAAAGCAAGTCAAAGTCGTC
GGTAATGCACTATGAACTCATGGACAGGGTACCCCTTGCCAGAAACAATAGCGGAGGCTGGGTGC
GCGCGTAACGATAAGCGGTTACAAGTGCATATGAGCACAAAAGGTGAACCTGAAAGATCTGGTTA
TTTAGGTTCGGGCAAAACGGCACTTGGTCGTGTGACGGACGCGTGTTGCTCGCACCAGCAACCGT
GTCGTAGCTGGTGGCTACAGTTAGGGCAACGTGGGCCACCACCGCTTTGTGACGTAATCATTGAC
GGTTGAGACATACCGTCCAAAGCCCCTTTGGACACACACCCCTGACGCCCTGTGATGTCGTGTCA
AGTAATTTGCAACGGCCTAGATAACCGTGTTTGGAATCTTGTTTCAGAGTGATAGCTAGTTTCAA
GCCATCATGGGAAGGGGGGAGGGATACCCTCCATGGTGATACACT
Right flanking sequence: Indices 120746 -- 121245
TGGCGCCACAATTATGATTGCTCCCATCCCGCCTTGACCTACCTCGTATCGCCCCTATCTGTTGT
CCTTTGGAACGACTTTGTCCTATGTGCCAAAGCAGAAAAAAGAAAAACAAGTTGATCCACGGTTA
ACCAAACCCTAACTCCGCCTGCATATAAGCAACCACGTTCTACCGGAAGTGAAAATCCTTATCTA
TTAAAACCAAAACCCAATAAATAAATAAAGGGGACACTTGCGGCGGGCTATGCACCAGGCACACC
CCCCGACCCCGCTAGGCGATCAAACGCTGATCTTGTTGGTGTACTTCAAGTAGATGTAACCACCG
ACGTCAGCCAAAAACAAAAGCACCAAGGGCAAGATAATCATGATCAACCCGGTGAGCAGGCACAC
GGACACCACCAGCTCTAGTTTGTAGACGACTCTAACCAATTCAATCGAAAGCATGCTGTGGATTG
TAAAATTGGCGACGATCGACTCCAACTTATACTGTTGTGCATCCA
Found at i:125059 original size:12 final size:12
Alignment explanation
Indices: 125030--125060 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
125020 GGAAGACAAG
*
125030 CAAAAAGATGAC
1 CAAAACGATGAC
125042 CAAAACGATGAC
1 CAAAACGATGAC
125054 CAAAACG
1 CAAAACG
125061 TGGAAAACGA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.55, C:0.23, G:0.16, T:0.06
Consensus pattern (12 bp):
CAAAACGATGAC
Left flanking sequence: Indices 124530 -- 125029
AGCTCAAGACCCTCAACTACATCCTCGAGCACGGTGCCACCCGCGCCGTCGAGCTCGGGTTCACG
TTGGAGGACATTCCGGCCGAGCTTGTGTTTTCCCAGGAGCAGGAGGCGCTGGCGCTGGCCCCAGA
GTGTGCCTACAAGTTCATCCACGACCAGTGCACGAAAATGGGCGACATCGAGCACTTTGACCTTC
TGTTGCTGCCGGACAACGCGCTGGGCCACGCGGTGGTGCACTTTACGCTGATCGACCTGGCGATC
AAGATGGTGGAGTTCTACAGCAAGCGCATCGAGTACGACCGCCAGCGGTCGGAGAGCGGCATTCC
TCGTAAGCTGAAGTTTCGCTACGATATCAAGTTTGTGGCGGCTGGGTTTGCGCGGGACCGGTGCG
ACCGCACGCCGGTGGAGCACGCCAACGGGAATGGCGTGGGTGAGGCGTGTGGGAACGAAGAGGGA
GAAGGGGAAGACGAGGGAAAGGCGGAGGAGGAAAAGGAAGACAAG
Right flanking sequence: Indices 125061 -- 125553
TGGAAAACGAGGACGTGCGATTGAACTCTGGTCCGAAGGAGCTAAAGTCCAAGGCGAATCCAAAG
TCGCTACCGTCTGGCTCGAAAGACGCCCAGGTTCATCAGTCCGACAAGGCTAAGCCCCAGGCCAA
GCACCAGGCTCACTCTGAATCCGTTCAGTCTCAGACCCACCAGCCTGGGCCTTCTCACCAGCCTG
GGCCTTCCCACCAGTCTGGGCCTTCCCACCAGTCTAAGCTCGAGTCCAACCACCCATCTGGGTCT
TCTGGGTCTTCCCAGCCCGGCCCCTCCCCCACCTCCCACCCATCCCACCCAGACTCCCGCAGGCG
CAAGCCCAAACACCCCAAGGAAGTGCTCGGACCCGCGTCGAGACCCCACCCGCGCCCGCTCCCGC
TCGACGAAGGCACCCCGCCCGCGTCGCCCCCGCCCACCCACGAGGCCCCCGTGTCGCCTCCACCC
CCGAAACTGCACACCCTGGAGCCACTGCCGCCGCTGGA
Found at i:125290 original size:18 final size:18
Alignment explanation
Indices: 125226--125287 Score: 106
Period size: 18 Copynumber: 3.4 Consensus size: 18
125216 CAGTCTCAGA
125226 CCCACCAGCCTGGGCCTT
1 CCCACCAGCCTGGGCCTT
*
125244 CTCACCAGCCTGGGCCTT
1 CCCACCAGCCTGGGCCTT
*
125262 CCCACCAGTCTGGGCCTT
1 CCCACCAGCCTGGGCCTT
125280 CCCACCAG
1 CCCACCAG
125288 TCTAAGCTCG
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
18 41 1.00
ACGTcount: A:0.13, C:0.48, G:0.21, T:0.18
Consensus pattern (18 bp):
CCCACCAGCCTGGGCCTT
Left flanking sequence: Indices 124726 -- 125225
GTTGCTGCCGGACAACGCGCTGGGCCACGCGGTGGTGCACTTTACGCTGATCGACCTGGCGATCA
AGATGGTGGAGTTCTACAGCAAGCGCATCGAGTACGACCGCCAGCGGTCGGAGAGCGGCATTCCT
CGTAAGCTGAAGTTTCGCTACGATATCAAGTTTGTGGCGGCTGGGTTTGCGCGGGACCGGTGCGA
CCGCACGCCGGTGGAGCACGCCAACGGGAATGGCGTGGGTGAGGCGTGTGGGAACGAAGAGGGAG
AAGGGGAAGACGAGGGAAAGGCGGAGGAGGAAAAGGAAGACAAGCAAAAAGATGACCAAAACGAT
GACCAAAACGTGGAAAACGAGGACGTGCGATTGAACTCTGGTCCGAAGGAGCTAAAGTCCAAGGC
GAATCCAAAGTCGCTACCGTCTGGCTCGAAAGACGCCCAGGTTCATCAGTCCGACAAGGCTAAGC
CCCAGGCCAAGCACCAGGCTCACTCTGAATCCGTTCAGTCTCAGA
Right flanking sequence: Indices 125288 -- 125553
TCTAAGCTCGAGTCCAACCACCCATCTGGGTCTTCTGGGTCTTCCCAGCCCGGCCCCTCCCCCAC
CTCCCACCCATCCCACCCAGACTCCCGCAGGCGCAAGCCCAAACACCCCAAGGAAGTGCTCGGAC
CCGCGTCGAGACCCCACCCGCGCCCGCTCCCGCTCGACGAAGGCACCCCGCCCGCGTCGCCCCCG
CCCACCCACGAGGCCCCCGTGTCGCCTCCACCCCCGAAACTGCACACCCTGGAGCCACTGCCGCC
GCTGGA
Done.