Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold31

Parameters: 2 7 7 80 10 50 500

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500

Length: 309198
ACGTcount: A:0.23, C:0.27, G:0.27, T:0.23

Warning! 70 characters in sequence are not A, C, G, or T


File 1 of 2

Found at i:10446 original size:9 final size:9

Alignment explanation


    Indices: 10432--10456  Score: 50
    Period size: 9  Copynumber: 2.8  Consensus size: 9

      10422 AGTTTACCTT

                     
      10432 GTTGCTGAG
          1 GTTGCTGAG

                     
      10441 GTTGCTGAG
          1 GTTGCTGAG

                   
      10450 GTTGCTG
          1 GTTGCTG

      10457 GTTCTGCTGA


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   9   16  1.00

ACGTcount: A:0.08, C:0.12, G:0.44, T:0.36


Consensus pattern (9 bp):   
GTTGCTGAG

Left flanking sequence: Indices 9932 -- 10431
CTTACATAGTGAATAGTCACTGGGCCGCAATGCAATTAAATATACTAAACCAATTTAGTCCTTGC
TTTTACCGAAAAGCTTTCGTAACTTGCCGAACTTCTTTTTGTCCTTTTGCGGGCTGCCTTGTCCA
TCTCGGGACGATGCCTCCAGGGCGCGAACAAATGGCACCGCCAGCGCTTGTTCTTCATTCCGCAC
TGATGGTAAAATGAAGTTGTTGGTGATGAAGCCACCAGTCTTTTGAGGCTTCTTTTGCTCCTGTT
GGTGGCGGCCAAAACCCATGTGATGACCACGGCCACCAGTAGCAGGGGAGGGTCCCGAAGCCGCA
GCAGCTACACCGGGTTCATAGTCTTCATCGTCAGAGTCAGCAAACCGCGACTTGAAGGCACCGGA
ATTACCAGAAAGCGGCACAACCCCGTCGGGAGCGCGCTGTGAACCATTGTTGTAGTACTGTTGCT
GGTTTTGTCCCGACAGCCCATTACGCAAAGTGAGTAGTTTACCTT


Right flanking sequence: Indices 10457 -- 10956
GTTCTGCTGAGGGTTTGCCCGCAATGTCGTGGCACCCTGAGGGACAGCGCTGGCACGATTAGCTT
GGGCACGAGCCTGCACCTGAGCCTGCTGCTGGGGAGTGATTTTGAGGGAACCCGACAGCGAGCGG
TTGTGACCTTTAGGAGGAGGCGGGGCAACCGACCCGTTCTGGGCGGCCTTGAACCCAGCATTGGG
GTCCGATTCATTTTCCTTAGAGAAAGACGACTTACGAGCCAAACCGAATTGCGACACGGGTCGCG
AGCTGGCTTTGGCATACAACTGCGCTGCTTTAACCTTCGAAGGCAGTTGATAGCCGGGCTGAAGA
GTTGGGTGGGGGGCAATAGGCTGAACATAGCCACCAGTCGCAGGGGCTCCATGTGTCAGCTGGCG
AAGCGAGCGCAGCAGCATCTTGGCCCCAGGTTGCTGGCGAGGTTCTGCGTACAGTTGCGGGCGCA
TAGTCCGTTGCTTTTCTTGGGCAGGCGGCTGAGGTGCCCGTAAAC



Found at i:69507 original size:21 final size:21

Alignment explanation


    Indices: 69474--69513  Score: 53
    Period size: 21  Copynumber: 1.9  Consensus size: 21

      69464 AAGGAGGCCC

                   *     *       
      69474 CTGCTCCTACCCCTGCTGCTG
          1 CTGCTCCCACCCCCGCTGCTG

                    *          
      69495 CTGCTCCCGCCCCCGCTGC
          1 CTGCTCCCACCCCCGCTGC

      69514 CGGTGGCGAT


Statistics
Matches: 16,  Mismatches: 3, Indels: 0
        0.84            0.16        0.00

Matches are distributed among these distances:
  21   16  1.00

ACGTcount: A:0.03, C:0.55, G:0.20, T:0.23


Consensus pattern (21 bp):   
CTGCTCCCACCCCCGCTGCTG

Left flanking sequence: Indices 68974 -- 69473
CAAACCTACTCCAACAAATCGAATTGTAAGTTGTGAAAGCCAGACGAAGAATCTCAAGGGTAATG
ATTGCTGTTTTCCTTAAATCATGAAGGACCTGATCAAGACAAAAGTATCCAGTCACCAAGAGTCA
AAATTCTTGATTGTTGGGTCTGGAAAATACGTTAAGTTCTTCTTGATAAGCGACGCAATGATGTT
GATGACCACATGCCGACACAACGTTCAGCTGAGGGCGTTTTCAAAGATTTCCATTCCCAAACGAA
TGGGTTAACTTATTCGGTTGCTTTCGATATCACAATATCTATCACATAATTACTAACTTCACTAG
AAAATGGGTTCCGCTTATCAGATTTTTGGCAAACAAGTTCCTGCTCATGTGGTAAGTTATTTCGA
CTGGTTTGCAGATTTGCATTTACCAAATACTAACAAATTGTAGCTTGCCCTTGCGACTTTAGGGT
CGGTCACTGCCATAGCTGCTTGGCCCAGAGCTAAAAAGGAGGCCC


Right flanking sequence: Indices 69514 -- 70013
CGGTGGCGATGACTTTGACTTGGAAAAGTTCTTGAATGACTTAACCAAGGAGGAATCTAAGTAAT
CATGCATATCCTTATATATTTTTCCATATTTTATGCCATACCAATGCGCCGTAAAATTCATGTCA
AGTCAAGTGACGGCGTTCTAGATTGGATTGAGGTATCGAAACTGCCAGTTTTGGCCCCTTATCCC
CCAATCAAGACAAGGTTCGTGATCAAGTTAGAGGCGCGGAGCAAAGTGCAAGGCCACTTGTCGTC
TAATGAAGTCGTTTACGGGGTGATTTGACCAAATTAACTCTACACATTGCTTTTTGTGGATGTTA
TTCAAATTCGAGCATAGTGACTGGGTCTGCAAACGAGATGCATATCTAAGCTACCACCAGCTTTG
ACAGCATTTTCATGCGATATGAAATATCAACCTATTAACTCGCATGGACATTCCCGACCCGCTAT
CGTTTACTTCTCCCCACCCCGAGTACGGATATTTGAAATCGTTTG



Found at i:85873 original size:11 final size:12

Alignment explanation


    Indices: 85857--85891  Score: 54
    Period size: 12  Copynumber: 3.0  Consensus size: 12

      85847 CATGAAATAG

                        
      85857 AAAACCT-GCCA
          1 AAAACCTAGCCA

                   *    
      85868 AAAACCTGGCCA
          1 AAAACCTAGCCA

                        
      85880 AAAACCTAGCCA
          1 AAAACCTAGCCA

      85892 CCTTCGTAAA


Statistics
Matches: 22,  Mismatches: 1, Indels: 1
        0.92            0.04        0.04

Matches are distributed among these distances:
  11    7  0.32
  12   15  0.68

ACGTcount: A:0.46, C:0.34, G:0.11, T:0.09


Consensus pattern (12 bp):   
AAAACCTAGCCA

Left flanking sequence: Indices 85357 -- 85856
GAACGGTGACGGTGGTGAGTGTGGGAACGGTGATTCAGGGTGTCTGGTGTGAAATGTTTAGCTTA
CTGAATGGTTAACTGGATCTACTGTGTTTCCCATCGCGCTTTGGTAGAATCACCAGATCGACGAA
ATGGTACCATTTTAGCTCAGGGTTGACTGAGGTGTTCACGACCGTTCAGTAACCGTTCAGTACCC
GCTCGTGTACCTTTCATATCTGTCTGATCAGGGCGTACCTTAAATAACAATGAGCGAGTCTTTCC
ATGATGACAATTGTCTTGCGCTTAACCGTTTCGAGTCACACTACCACAGGGTCGCTCAATTGGTC
AACCAGAATGAATAAGTAAACAACCTCTTGAAATAAACCATCACCATGGCGTCAGCCCCCATTCT
CGTCTAACTCTCCTATCTTTCCGATCGCCGCTCGTTTCCTCATGCTTCCACAACATTCTCCACTA
AGTCCGACACATACCCCAGACAGGACCCACTCAACCATGAAATAG


Right flanking sequence: Indices 85892 -- 86391
CCTTCGTAAACACCTAGAAATACAACCCCTAACAACCCCTTATCACCCCTCAACGCCCACGACCA
CCACAAACCCCCTCCCTTTTCCCACCATACTACCCTTTTTCTTTCCTTCGCGCGAACTTCTATTC
GCGGATCACGAACAAACCATCTACCGTGCCAAATCCCGATAACCCCCATGGGCTATATTCCTCCA
CCCGACGAGCCTGCTGGGCTGAAACCCCCGTCTTCGTCACGTCTGGACGTGATCACCATTGCCAT
CCCGCGCAACCCCCTGGTGGGCCTCGTGTGGGGACCCCTCGTGCCCGCGCTGGACAACCGCCCAG
CGCTCTGGACGGCGATTGGTGTCCAGCTCTTCATTGGGGTGTGGCTGTTTAGCAAGGCGCGCCAG
ATCGTGCGCCAGGCGCGCTACTTTGGGCGCTCGGCCGCCCTGGCCGCCCTCAAACTGGCGGTCCC
CGTGCTAGGGGGACTGGTGCTTGTTTTCGGAAGCGGGCTCGAGAT



Found at i:87198 original size:14 final size:14

Alignment explanation


    Indices: 87178--87217  Score: 71
    Period size: 14  Copynumber: 2.9  Consensus size: 14

      87168 ACGCGAGCTC

                          
      87178 ACTCTGACCTCGGA
          1 ACTCTGACCTCGGA

            *             
      87192 TCTCTGACCTCGGA
          1 ACTCTGACCTCGGA

                        
      87206 ACTCTGACCTCG
          1 ACTCTGACCTCG

      87218 CAAACCCAAC


Statistics
Matches: 24,  Mismatches: 2, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
  14   24  1.00

ACGTcount: A:0.17, C:0.38, G:0.20, T:0.25


Consensus pattern (14 bp):   
ACTCTGACCTCGGA

Left flanking sequence: Indices 86678 -- 87177
CGGGAGTCCAACATCGCGCGGACCAAGGCGCTCTTGGACGGCGAGTTGAAGGACGTCAACGAGTT
GAACAAGGCCGAGCGCATCGACTTGATCCTCGAGGGCAAGTCGCCGTTTGTCAACCCGAACTACA
CCAAGCTGCACATCCAGTTGGGGACGTTTTCCATCGAGCTGGACGACGAGTTCGACGTGGCGTGG
CAGAACTTCAACCCGTGGGACGAGCTCAAGATGGAGACCGACTACGACATCCGGTTGGTGCCGAG
GTGGAACTGGATCTCGGAAGAGGATGACGAGGACAAGACAGAGAGCATAGCATAGCATAATAGAC
AGAACAATGAGAGAGCGAAATAAGCGAGCGAAGAAGGTAGAGCGAAAGCAGTTATTTTAGAGTTA
TATGGATTAGGCTGAAACCGTATCAGAGAACGAGTCAATTTGTACATACTCCAAGTCGTCCATAT
TCACTGTCACAGGTCCCACGGCCTGATTGTGACCTACGCGAGCTC


Right flanking sequence: Indices 87218 -- 87717
CAAACCCAACGTCACCGTAGAAACTAGACAATAGCCCAATAACCTACTTCATTCTCATCATGGTA
CTAACACCGCCTCTCTCGTCTCATGCCCTTCCAAACCGTCTATTACTATGTACATTAGTTCCCCT
CGGGGACCTCGCCAAACAACTGCTTCACGTCATCGCCAGCCTTGATCTGCTCCTTGTTGAACAGA
GCCAAGTGGCGCTGCCACATCAACTCGGCGGGGTCCTGGTCGGGCTCCACCCACTCAAAACCATC
GCCCCCAGACATCCAGTACGCCTGCATCATCAAGTCGCCCAAGTTGTCCTTGGCCGCCATCAGCC
GGATCTTGGACCCGTCACGGGCGTACCCGGGAGTCAAGGTGTGCGGGTGGGAGAAGATGTCGTCG
TTGGTCCGACACAACTCCGCCATGAGCTCGGGGTTGTTCTCGCCCTGGTTCAAGTCGCGGTCAGC
ATCGACGATCTTGGCACAGAACATCATCTCGTCGGCATGCTTGAA



Found at i:92551 original size:11 final size:11

Alignment explanation


    Indices: 92535--92598  Score: 74
    Period size: 11  Copynumber: 5.6  Consensus size: 11

      92525 TCCGCTGAAA

                       
      92535 CACCCACCTTC
          1 CACCCACCTTC

                       
      92546 CACCCACCTTC
          1 CACCCACCTTC

                   *    
      92557 CACCCACATTAC
          1 CACCCACCTT-C

               *   *    
      92569 CACTCACATTAC
          1 CACCCACCTT-C

                  *    
      92581 CACCCAACTTC
          1 CACCCACCTTC

                   
      92592 CACCCAC
          1 CACCCAC

      92599 GTATCACCCC


Statistics
Matches: 46,  Mismatches: 6, Indels: 2
        0.85            0.11        0.04

Matches are distributed among these distances:
  11   27  0.59
  12   19  0.41

ACGTcount: A:0.27, C:0.56, G:0.00, T:0.17


Consensus pattern (11 bp):   
CACCCACCTTC

Left flanking sequence: Indices 92035 -- 92534
TCAGAAAATATGAAGTAGTGTAGAGAAGGGAGTAAGGGGAGAAGGGGAATGGATTATGTAGAGAT
GATGGGTGGCGTGTCGATGGCACTGTGGTCACGGGACTTGGGCTACAGGAAGAGGTTGAATATGG
TGGCAAAATGTGTCATGCAAAAAGGTGTTTAAAAGCGGTGAAACAGGTGGTGAAACAGATAAGAG
CTGCTCGTGAACCAGTGATTAATTTGGCTTGTAATACTCTCTCTGAGGCCAAGGGTGTTGCTTCG
TGCTTCACCTTAGAAACACCAAATGATGCAGTCTTGTAATCAGCAGATGGAGAGATTTTAATATA
AGCAACTAACTATTTATAACGGACGTTGACAATACCGGTCCAGTCAATACCAAAGTCCCAAACCG
CCATTACTTTCCCACCGCTTCACTCTCGATCTCTCGCACATTCTACCACCCACCCACCAACCTCA
CTACCTTTGGCCTTTTTCCCACACCATTGCCCCACTCCGCTGAAA


Right flanking sequence: Indices 92599 -- 93098
GTATCACCCCTTACCCTTCCTTCTTGTTCTCCCTCATTCTACCTCCTTCCACTCTACTCATAAAA
CCACCTTTTTCCACCGTCAGCGCGCATGCCCACGGTAGACGACTTTCTCAATGACGACCCCTGGG
CGGTGATCGCTCCCCACGAAGAGCTGGGCGAGTACAAGGCCATTGTCGAGTGTCTCTCGGGCGCC
AACCCCGAGGTGATCGACAACGTGCTCGTCTCGCTCAAGGACCAGCTCAAACGGAGCACCAAGAC
GATCTCCGACGACCAGGCACCCCATTTCGCGTTTGTGGCCGGGCTCTACGCGCAGTTGGCGATGC
TTCCACTGGCCCCGCTCAACGCCAACCACCTCCACCAGTTGCTTCCGTTGATCAACCCGTTGTAC
CCCAAGATCAGCGACGAATGCTCCCCCAAAGTGGTGTTGGTGGTGGTCCGGTGCCTCAAAGTGGC
GCCCGAGTCCACGCACACCGTGCTCACGGACTACCTCGAGTTGCT



Found at i:98537 original size:9 final size:9

Alignment explanation


    Indices: 98507--98559  Score: 52
    Period size: 9  Copynumber: 5.7  Consensus size: 9

      98497 TGGGAAGGAA

                 *   
      98507 GGAGAGAAG
          1 GGAGAAAAG

                  *   
      98516 GGAAGAGAAG
          1 GG-AGAAAAG

                     
      98526 GGAGAAAAG
          1 GGAGAAAAG

                    * 
      98535 GGAGAGAAGG
          1 GGAGA-AAAG

                   * 
      98545 GGAGAAAGG
          1 GGAGAAAAG

                  
      98554 GGAGAA
          1 GGAGAA

      98560 GGGAAGAGAA


Statistics
Matches: 40,  Mismatches: 2, Indels: 4
        0.87            0.04        0.09

Matches are distributed among these distances:
   9   23  0.57
  10   17  0.43

ACGTcount: A:0.47, C:0.00, G:0.53, T:0.00


Consensus pattern (9 bp):   
GGAGAAAAG

Left flanking sequence: Indices 98007 -- 98506
ACGGGCACAAACTGGCCCTGCGCCTGGGCCGGCGTCTGCTGCGGGCCTGGGCTCGGGATCGCCTG
CTGGGCGTACCCGCCGGCGAGTGGCAGGTGGGCCGGGAGCTGGGCGTGCTGTGGCGGCTGGAACA
GCGAGTCGCCGGGGTAGGTGGGGCGGGCGTCCATCAACTCGGTGTTGAACGCTCGGTGCACGCGT
TTCTTGCGGCCCACTGAGAGCTGGGCCATCTCCAGTGAGAGCTCGGACATGTTGGCATTTTTTGC
TGAAAAACGCGTATGAAAGCGTGGGTGGCCGGGCAACAGTGGGTGAGGCGGGGAATTTGGGGAAA
TTCGGGGTGGTGGGTGGGTTGTGGAGGGGTATACGGTGCTACTGGTGGGTTTTGCTTGTGGTGGC
TGGGCGTGGGTGGATGGTGGGTCTACGTGGCTGATCCGAGCACATGCATGGAACGGTAAACAATA
GGACGTGGGGAAGAGGAAGTATAAGCGGAACGAGATGGGAAGGAA


Right flanking sequence: Indices 98560 -- 99059
GGGAAGAGAAGTGCAAGTTTGGGTGGAGAGTGCAAGTTTAGGCGGAGTATTGCGTGGTGGATTGG
AGAGGGTGGAAGAAGGCGGGCCATATGGGCTGAGATTCATGGTGGTGACGGTCGTATAGGGTACG
AGTGGGAAGTGGCGGTGAGCAGCGGGTGGAGGCGATTGTGAGGTGGGTTTTGTGACTGTAATGCT
ATGACACAAGATCCATTGTGGTGAGGCACAGATGGAGGTATTGTGGTGATACAGAGACCGTAGTT
TAAGCAGATGATCGTGAACCAGGCACCGGTACGGAATAGAGAAAGCACCTACTACGGGTAGCAAT
TGACACGTGTAAGAGTACCAGGCCCGTACCAGGTATGATATTCCACCCAGAAGACCGCCCATACA
TTGCTGAAAACGGTAGTACTCCATGGGGCTAAAATTAAAGGAAGCAAACTATCCCAGGAGCATTT
CTACAGCACACTCTAGTCACAAGCAACTAGTACGTTTCCTACACC



Found at i:98568 original size:19 final size:19

Alignment explanation


    Indices: 98507--98569  Score: 80
    Period size: 18  Copynumber: 3.4  Consensus size: 19

      98497 TGGGAAGGAA

                                
      98507 GGAGAG-AAGGGAAGAGAAG
          1 GGAGAGAAAGGG-AGAGAAG

                               
      98526 GGAGA-AAAGGGAGAGAAG
          1 GGAGAGAAAGGGAGAGAAG

                               
      98544 GG-GAGAAAGGG-GAGAAG
          1 GGAGAGAAAGGGAGAGAAG

                     
      98561 GGAAGAGAA
          1 GG-AGAGAA

      98570 GTGCAAGTTT


Statistics
Matches: 40,  Mismatches: 0, Indels: 8
        0.83            0.00        0.17

Matches are distributed among these distances:
  17   10  0.25
  18   15  0.38
  19   15  0.38

ACGTcount: A:0.48, C:0.00, G:0.52, T:0.00


Consensus pattern (19 bp):   
GGAGAGAAAGGGAGAGAAG

Left flanking sequence: Indices 98007 -- 98506
ACGGGCACAAACTGGCCCTGCGCCTGGGCCGGCGTCTGCTGCGGGCCTGGGCTCGGGATCGCCTG
CTGGGCGTACCCGCCGGCGAGTGGCAGGTGGGCCGGGAGCTGGGCGTGCTGTGGCGGCTGGAACA
GCGAGTCGCCGGGGTAGGTGGGGCGGGCGTCCATCAACTCGGTGTTGAACGCTCGGTGCACGCGT
TTCTTGCGGCCCACTGAGAGCTGGGCCATCTCCAGTGAGAGCTCGGACATGTTGGCATTTTTTGC
TGAAAAACGCGTATGAAAGCGTGGGTGGCCGGGCAACAGTGGGTGAGGCGGGGAATTTGGGGAAA
TTCGGGGTGGTGGGTGGGTTGTGGAGGGGTATACGGTGCTACTGGTGGGTTTTGCTTGTGGTGGC
TGGGCGTGGGTGGATGGTGGGTCTACGTGGCTGATCCGAGCACATGCATGGAACGGTAAACAATA
GGACGTGGGGAAGAGGAAGTATAAGCGGAACGAGATGGGAAGGAA


Right flanking sequence: Indices 98570 -- 99069
GTGCAAGTTTGGGTGGAGAGTGCAAGTTTAGGCGGAGTATTGCGTGGTGGATTGGAGAGGGTGGA
AGAAGGCGGGCCATATGGGCTGAGATTCATGGTGGTGACGGTCGTATAGGGTACGAGTGGGAAGT
GGCGGTGAGCAGCGGGTGGAGGCGATTGTGAGGTGGGTTTTGTGACTGTAATGCTATGACACAAG
ATCCATTGTGGTGAGGCACAGATGGAGGTATTGTGGTGATACAGAGACCGTAGTTTAAGCAGATG
ATCGTGAACCAGGCACCGGTACGGAATAGAGAAAGCACCTACTACGGGTAGCAATTGACACGTGT
AAGAGTACCAGGCCCGTACCAGGTATGATATTCCACCCAGAAGACCGCCCATACATTGCTGAAAA
CGGTAGTACTCCATGGGGCTAAAATTAAAGGAAGCAAACTATCCCAGGAGCATTTCTACAGCACA
CTCTAGTCACAAGCAACTAGTACGTTTCCTACACCAACCTAACAC



Found at i:98606 original size:19 final size:19

Alignment explanation


    Indices: 98569--98606  Score: 58
    Period size: 19  Copynumber: 2.0  Consensus size: 19

      98559 AGGGAAGAGA

                       *  *    
      98569 AGTGCAAGTTTGGGTGGAG
          1 AGTGCAAGTTTAGGCGGAG

                               
      98588 AGTGCAAGTTTAGGCGGAG
          1 AGTGCAAGTTTAGGCGGAG

      98607 TATTGCGTGG


Statistics
Matches: 17,  Mismatches: 2, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  19   17  1.00

ACGTcount: A:0.24, C:0.08, G:0.45, T:0.24


Consensus pattern (19 bp):   
AGTGCAAGTTTAGGCGGAG

Left flanking sequence: Indices 98069 -- 98568
CTGCTGGGCGTACCCGCCGGCGAGTGGCAGGTGGGCCGGGAGCTGGGCGTGCTGTGGCGGCTGGA
ACAGCGAGTCGCCGGGGTAGGTGGGGCGGGCGTCCATCAACTCGGTGTTGAACGCTCGGTGCACG
CGTTTCTTGCGGCCCACTGAGAGCTGGGCCATCTCCAGTGAGAGCTCGGACATGTTGGCATTTTT
TGCTGAAAAACGCGTATGAAAGCGTGGGTGGCCGGGCAACAGTGGGTGAGGCGGGGAATTTGGGG
AAATTCGGGGTGGTGGGTGGGTTGTGGAGGGGTATACGGTGCTACTGGTGGGTTTTGCTTGTGGT
GGCTGGGCGTGGGTGGATGGTGGGTCTACGTGGCTGATCCGAGCACATGCATGGAACGGTAAACA
ATAGGACGTGGGGAAGAGGAAGTATAAGCGGAACGAGATGGGAAGGAAGGAGAGAAGGGAAGAGA
AGGGAGAAAAGGGAGAGAAGGGGAGAAAGGGGAGAAGGGAAGAGA


Right flanking sequence: Indices 98607 -- 99106
TATTGCGTGGTGGATTGGAGAGGGTGGAAGAAGGCGGGCCATATGGGCTGAGATTCATGGTGGTG
ACGGTCGTATAGGGTACGAGTGGGAAGTGGCGGTGAGCAGCGGGTGGAGGCGATTGTGAGGTGGG
TTTTGTGACTGTAATGCTATGACACAAGATCCATTGTGGTGAGGCACAGATGGAGGTATTGTGGT
GATACAGAGACCGTAGTTTAAGCAGATGATCGTGAACCAGGCACCGGTACGGAATAGAGAAAGCA
CCTACTACGGGTAGCAATTGACACGTGTAAGAGTACCAGGCCCGTACCAGGTATGATATTCCACC
CAGAAGACCGCCCATACATTGCTGAAAACGGTAGTACTCCATGGGGCTAAAATTAAAGGAAGCAA
ACTATCCCAGGAGCATTTCTACAGCACACTCTAGTCACAAGCAACTAGTACGTTTCCTACACCAA
CCTAACACCTGGAACAATCACTCCTGGAACGATCCTGTCCTACTC



Found at i:99109 original size:22 final size:23

Alignment explanation


    Indices: 99081--99124  Score: 72
    Period size: 23  Copynumber: 2.0  Consensus size: 23

      99071 TGGAACAATC

                        *          
      99081 ACTCCTGGA-ACGATCCTGTCCT
          1 ACTCCTGGAGACAATCCTGTCCT

                                  
      99103 ACTCCTGGAGACAATCCTGTCC
          1 ACTCCTGGAGACAATCCTGTCC

      99125 CCAATGCTAC


Statistics
Matches: 20,  Mismatches: 1, Indels: 1
        0.91            0.05        0.05

Matches are distributed among these distances:
  22    9  0.45
  23   11  0.55

ACGTcount: A:0.20, C:0.36, G:0.18, T:0.25


Consensus pattern (23 bp):   
ACTCCTGGAGACAATCCTGTCCT

Left flanking sequence: Indices 98581 -- 99080
GGTGGAGAGTGCAAGTTTAGGCGGAGTATTGCGTGGTGGATTGGAGAGGGTGGAAGAAGGCGGGC
CATATGGGCTGAGATTCATGGTGGTGACGGTCGTATAGGGTACGAGTGGGAAGTGGCGGTGAGCA
GCGGGTGGAGGCGATTGTGAGGTGGGTTTTGTGACTGTAATGCTATGACACAAGATCCATTGTGG
TGAGGCACAGATGGAGGTATTGTGGTGATACAGAGACCGTAGTTTAAGCAGATGATCGTGAACCA
GGCACCGGTACGGAATAGAGAAAGCACCTACTACGGGTAGCAATTGACACGTGTAAGAGTACCAG
GCCCGTACCAGGTATGATATTCCACCCAGAAGACCGCCCATACATTGCTGAAAACGGTAGTACTC
CATGGGGCTAAAATTAAAGGAAGCAAACTATCCCAGGAGCATTTCTACAGCACACTCTAGTCACA
AGCAACTAGTACGTTTCCTACACCAACCTAACACCTGGAACAATC


Right flanking sequence: Indices 99125 -- 99624
CCAATGCTACCTTCGACGGCCCATAATACCAACCTGTTGCCTCATAACCCGCCACCCCACAACCC
AGTACCCTACAGTTGATTCATACTGAGAAGATTCTAACCCGTAACCGACTACCTGTAACCCACAC
CCGTAACCCACTACCCGCCACCCCTCATCCCGTCTACACCCGTCTCAACCCACCTCCACCTTCTT
CCAAACTCATAAACATTACCATTACTTATTAATCACATAGCGGCCTCCGGCTCGCATCTAGTCCC
GTCCCGTGTAGTAGTCAAAGTCAATCGCGATCTGACACCCCAACACCAACGCCCGCACGTCGCGG
TCCGCGTCGGCAAACTCCACCCGGTAGTTCACCTCCAGCGACCGCCAGCTCCCCGGCGGCTTCGC
GGTGATCGTCGCCACTACCTGGCCCTGGCTCTGCACCTGGAACACGTCCAGCTGGCTCTTCTCGT
CAATACACGCAAACGGCGCCGCCTCGTGCTCGCGACTGAGGTTGT



Found at i:99249 original size:14 final size:14

Alignment explanation


    Indices: 99226--99271  Score: 67
    Period size: 14  Copynumber: 3.4  Consensus size: 14

      99216 GAAGATTCTA

                      *   
      99226 ACCCGTAACCGACT
          1 ACCCGTAACCCACT

               *          
      99240 ACCTGTAACCCAC-
          1 ACCCGTAACCCACT

                          
      99253 ACCCGTAACCCACT
          1 ACCCGTAACCCACT

                 
      99267 ACCCG
          1 ACCCG

      99272 CCACCCCTCA


Statistics
Matches: 28,  Mismatches: 3, Indels: 2
        0.85            0.09        0.06

Matches are distributed among these distances:
  13   12  0.43
  14   16  0.57

ACGTcount: A:0.28, C:0.48, G:0.11, T:0.13


Consensus pattern (14 bp):   
ACCCGTAACCCACT

Left flanking sequence: Indices 98726 -- 99225
TGTGAGGTGGGTTTTGTGACTGTAATGCTATGACACAAGATCCATTGTGGTGAGGCACAGATGGA
GGTATTGTGGTGATACAGAGACCGTAGTTTAAGCAGATGATCGTGAACCAGGCACCGGTACGGAA
TAGAGAAAGCACCTACTACGGGTAGCAATTGACACGTGTAAGAGTACCAGGCCCGTACCAGGTAT
GATATTCCACCCAGAAGACCGCCCATACATTGCTGAAAACGGTAGTACTCCATGGGGCTAAAATT
AAAGGAAGCAAACTATCCCAGGAGCATTTCTACAGCACACTCTAGTCACAAGCAACTAGTACGTT
TCCTACACCAACCTAACACCTGGAACAATCACTCCTGGAACGATCCTGTCCTACTCCTGGAGACA
ATCCTGTCCCCAATGCTACCTTCGACGGCCCATAATACCAACCTGTTGCCTCATAACCCGCCACC
CCACAACCCAGTACCCTACAGTTGATTCATACTGAGAAGATTCTA


Right flanking sequence: Indices 99272 -- 99771
CCACCCCTCATCCCGTCTACACCCGTCTCAACCCACCTCCACCTTCTTCCAAACTCATAAACATT
ACCATTACTTATTAATCACATAGCGGCCTCCGGCTCGCATCTAGTCCCGTCCCGTGTAGTAGTCA
AAGTCAATCGCGATCTGACACCCCAACACCAACGCCCGCACGTCGCGGTCCGCGTCGGCAAACTC
CACCCGGTAGTTCACCTCCAGCGACCGCCAGCTCCCCGGCGGCTTCGCGGTGATCGTCGCCACTA
CCTGGCCCTGGCTCTGCACCTGGAACACGTCCAGCTGGCTCTTCTCGTCAATACACGCAAACGGC
GCCGCCTCGTGCTCGCGACTGAGGTTGTACTGCCTGCGGGTCAAGTGCCACACCTTGGTACAGAA
CCCCACTTTTTCCGCGTTCTCCCCCGCCAACTCGACGCTGACGCGGTCGTTGGCTTTTTTCACCA
CCATCACCAACTGGTTCGCAGTGTCGTACACCTCAATCGTGTACG



Found at i:99277 original size:27 final size:27

Alignment explanation


    Indices: 99226--99277  Score: 68
    Period size: 27  Copynumber: 1.9  Consensus size: 27

      99216 GAAGATTCTA

                      *      * *       
      99226 ACCCGTAACCGACTACCTGTAACCCAC
          1 ACCCGTAACCCACTACCCGCAACCCAC

                                *    
      99253 ACCCGTAACCCACTACCCGCCACCC
          1 ACCCGTAACCCACTACCCGCAACCC

      99278 CTCATCCCGT


Statistics
Matches: 21,  Mismatches: 4, Indels: 0
        0.84            0.16        0.00

Matches are distributed among these distances:
  27   21  1.00

ACGTcount: A:0.27, C:0.52, G:0.10, T:0.12


Consensus pattern (27 bp):   
ACCCGTAACCCACTACCCGCAACCCAC

Left flanking sequence: Indices 98726 -- 99225
TGTGAGGTGGGTTTTGTGACTGTAATGCTATGACACAAGATCCATTGTGGTGAGGCACAGATGGA
GGTATTGTGGTGATACAGAGACCGTAGTTTAAGCAGATGATCGTGAACCAGGCACCGGTACGGAA
TAGAGAAAGCACCTACTACGGGTAGCAATTGACACGTGTAAGAGTACCAGGCCCGTACCAGGTAT
GATATTCCACCCAGAAGACCGCCCATACATTGCTGAAAACGGTAGTACTCCATGGGGCTAAAATT
AAAGGAAGCAAACTATCCCAGGAGCATTTCTACAGCACACTCTAGTCACAAGCAACTAGTACGTT
TCCTACACCAACCTAACACCTGGAACAATCACTCCTGGAACGATCCTGTCCTACTCCTGGAGACA
ATCCTGTCCCCAATGCTACCTTCGACGGCCCATAATACCAACCTGTTGCCTCATAACCCGCCACC
CCACAACCCAGTACCCTACAGTTGATTCATACTGAGAAGATTCTA


Right flanking sequence: Indices 99278 -- 99777
CTCATCCCGTCTACACCCGTCTCAACCCACCTCCACCTTCTTCCAAACTCATAAACATTACCATT
ACTTATTAATCACATAGCGGCCTCCGGCTCGCATCTAGTCCCGTCCCGTGTAGTAGTCAAAGTCA
ATCGCGATCTGACACCCCAACACCAACGCCCGCACGTCGCGGTCCGCGTCGGCAAACTCCACCCG
GTAGTTCACCTCCAGCGACCGCCAGCTCCCCGGCGGCTTCGCGGTGATCGTCGCCACTACCTGGC
CCTGGCTCTGCACCTGGAACACGTCCAGCTGGCTCTTCTCGTCAATACACGCAAACGGCGCCGCC
TCGTGCTCGCGACTGAGGTTGTACTGCCTGCGGGTCAAGTGCCACACCTTGGTACAGAACCCCAC
TTTTTCCGCGTTCTCCCCCGCCAACTCGACGCTGACGCGGTCGTTGGCTTTTTTCACCACCATCA
CCAACTGGTTCGCAGTGTCGTACACCTCAATCGTGTACGACCGCT



Found at i:104884 original size:12 final size:12

Alignment explanation


    Indices: 104867--104891  Score: 50
    Period size: 12  Copynumber: 2.1  Consensus size: 12

     104857 TTGTGTGCAG

                        
     104867 GAGATGACAAAC
          1 GAGATGACAAAC

                        
     104879 GAGATGACAAAC
          1 GAGATGACAAAC

             
     104891 G
          1 G

     104892 CCCAGTGTTT


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   13  1.00

ACGTcount: A:0.48, C:0.16, G:0.28, T:0.08


Consensus pattern (12 bp):   
GAGATGACAAAC

Left flanking sequence: Indices 104367 -- 104866
CACACAGTGGTGCCAGCAACCACCTCATCGTGGAGGTCTTTGATCGCCTTGACTGCGCTCTCAGC
GCCTTCGTTGGCCAGAGTCAATCCCGGCACAGAATTGCGGTGGCCGGTGGCGACCACCAAGAAAT
CGTAAGCAATGGGATCGTTTGAGCCAGCCACAAACACCTTGTTCGCAGCGGTGTCTACTTTTTCG
GCCTTCCCAGTGACGTACTCGTACTGGTGGGCCCCCTTCTGCTTCTCGAGACTCTGTTTTACGTT
AATCACAGCCTGGCTGCCGAGCTCAGGCTCTACCAACAACCGAGGCGCACTGGTGTTGTTGTAGG
TAGTCTCCAGCGGAGCCACCACAACCAATTTGACGGGCTCCTTAGCAGCAAGCACCGTCTGGGCA
GCAGCATAGCCCGCAAACGAGTTCCCAAGAACCACTACCGTTTTCATCGTTGACTACGTACAGGC
GGTAATCGCTATATATACGGCTGGTTTACGTCTGCTTGTGTGCAG


Right flanking sequence: Indices 104892 -- 105391
CCCAGTGTTTCTCCGGCGTTTGGCGGCGTTTCGGTCGGACTGATGGCTGATCCGGCCGATTATGC
ACGGCTGCATTGCATCTTGGGGTGAAGATGCGGGCGGATCGGCCTGTCAACACAAAGATCGAACA
TCCGATCTCTTTGTTTAGACCCATTAGCGTGGTCTGGCTACTTGACGTGTGCGGGGGCCGGCGAA
GAGTTTATATGCACTAACTCGCTTAGACGTGAACCAAGATGATGAACGTGGCAGACGAGGATAGC
CCGCGTCGTGTGCATGATGAAACAAGCCACCCCATGGAAACCCGTGGAAAAAATACGATAAACAA
GACGCTTGGCCTCTATCTGTAGATCCACCCAATCACCGTACAGATTCTCTTTTTGTCTATTGTCT
ATGCAATGCTAAGGAAGAATACACACCTTAAGCCTAAACTTCAAGTCGTTGCCCTCGATGTCGTG
CGGGTCGGGCTCCTCCACCAAGTCCACCATGTTGAACTTGAACAC



Found at i:108169 original size:8 final size:8

Alignment explanation


    Indices: 108156--108254  Score: 85
    Period size: 8  Copynumber: 13.5  Consensus size: 8

     108146 CTCTCACCAC

                    
     108156 TCACACAG
          1 TCACACAG

                  * 
     108164 TCACACGG
          1 TCACACAG

                    
     108172 T--CACAG
          1 TCACACAG

                    
     108178 TCACACAG
          1 TCACACAG

                  * 
     108186 TCACACGG
          1 TCACACAG

                    
     108194 T--CACAG
          1 TCACACAG

                    
     108200 T--CACAG
          1 TCACACAG

                    
     108206 TCACACAG
          1 TCACACAG

                    
     108214 T--CACAG
          1 TCACACAG

                    
     108220 T--CACAG
          1 TCACACAG

                    
     108226 TCACACAG
          1 TCACACAG

                      
     108234 TCACGCACAG
          1 TCA--CACAG

                    
     108244 TCACACA-
          1 TCACACAG

                
     108251 TCAC
          1 TCAC

     108255 TTCTTACCCC


Statistics
Matches: 79,  Mismatches: 4, Indels: 17
        0.79            0.04        0.17

Matches are distributed among these distances:
   6   28  0.35
   7    4  0.05
   8   39  0.49
  10    8  0.10

ACGTcount: A:0.33, C:0.37, G:0.15, T:0.14


Consensus pattern (8 bp):   
TCACACAG

Left flanking sequence: Indices 107656 -- 108155
TTAGCCGAGCCTGATATACTGCACAGAGGCAACCATAACCTGACCTCCCAAGGCCACCCGTCCAG
CTCTACCCCCTGTTTATCAACGCTAGTATTTTCCTCTTCCCCGGCTGGACGCTTTCCGAGCTCCA
GCATGATTGTGCATACTTAAGAAGAAACCCGAGAGTTTATATCCGATTGGGAATTATACATGAAA
CGATTTGCAACCAAGACAATTATACGATTTAAACCATGCAAAACGCTAGAAATACATCACAAAGA
CCAACTCGAACAAATTTTAAACCAATGCCCAACACTCATATACCACCAACCTCACAAATCATAAC
TACCTCTTCATTGTACACTTTCATTTATCTATAGCAATTATTGTCCCCTTGGGGTGAGCTAGCCC
TCGGCTACCTCGAGTCATCCTCGATCTTGAATCGGCATCTCCATAGTTCAGCTCCTAGAAACACA
CCGCATCGTTTCCTATTCTCTTCATCCTCTCACCACTCTCACCAC


Right flanking sequence: Indices 108255 -- 108754
TTCTTACCCCTCCACCTTCTGCTTCAAGCTGTCAATCTGCACCTGCATCTGCTGCTGCTGGTGGT
CGTTGACGCCCGCGATCTGGTGGAAGTCCAAGATCTCCAGGTACATCATCACCCGCCAGGTGTCC
AACGGCAAGTTGGCGTCGTTGAACAGCCAGTCGAACTTCAGCTGGCAGATCGGCTCGTCGGTGGG
GTCGTGGTACGGCTCCATGTACGGGTGCTGCAACGCCTCCGCCGCCAGGATCCGGGTCTTGGGGT
CAAACACAAGCATCTTGGCCAACAAGTCGATGGCGTCGGGCTCCACGTGGTTGGCCAGCGCAAAC
CGCTCCAGGAACGGGATGGGCTCGCGGTGGGGCAACGACTGCACAAACCGAAGGGTGTTTTCCGA
GCAGATGGTGTCGATGACGTCGGGCGGCGGCGAGCCAAGCAACTCGGTGATGATCAGGAACTGGT
GCACGTGGTCCTTGCCCGGGAACAACGGCTTGCCCTCGATCATCT



Found at i:108180 original size:6 final size:6

Alignment explanation


    Indices: 108159--108248  Score: 76
    Period size: 6  Copynumber: 13.7  Consensus size: 6

     108149 TCACCACTCA

                                                                  
     108159 CACAGT CACACGGT CACAGT CACACAGT CACACGGT CACAGT CACAGT
          1 CACAGT CACA--GT CACAGT --CACAGT CACA--GT CACAGT CACAGT

                                                              
     108207 CACACAGT CACAGT CACAGT CACACAGT CAC-G- CACAGT CACA
          1 --CACAGT CACAGT CACAGT --CACAGT CACAGT CACAGT CACA

     108249 CATCACTTCT


Statistics
Matches: 72,  Mismatches: 0, Indels: 24
        0.75            0.00        0.25

Matches are distributed among these distances:
   4    3  0.04
   5    2  0.03
   6   37  0.51
   8   30  0.42

ACGTcount: A:0.33, C:0.37, G:0.17, T:0.13


Consensus pattern (6 bp):   
CACAGT

Left flanking sequence: Indices 107659 -- 108158
GCCGAGCCTGATATACTGCACAGAGGCAACCATAACCTGACCTCCCAAGGCCACCCGTCCAGCTC
TACCCCCTGTTTATCAACGCTAGTATTTTCCTCTTCCCCGGCTGGACGCTTTCCGAGCTCCAGCA
TGATTGTGCATACTTAAGAAGAAACCCGAGAGTTTATATCCGATTGGGAATTATACATGAAACGA
TTTGCAACCAAGACAATTATACGATTTAAACCATGCAAAACGCTAGAAATACATCACAAAGACCA
ACTCGAACAAATTTTAAACCAATGCCCAACACTCATATACCACCAACCTCACAAATCATAACTAC
CTCTTCATTGTACACTTTCATTTATCTATAGCAATTATTGTCCCCTTGGGGTGAGCTAGCCCTCG
GCTACCTCGAGTCATCCTCGATCTTGAATCGGCATCTCCATAGTTCAGCTCCTAGAAACACACCG
CATCGTTTCCTATTCTCTTCATCCTCTCACCACTCTCACCACTCA


Right flanking sequence: Indices 108249 -- 108748
CATCACTTCTTACCCCTCCACCTTCTGCTTCAAGCTGTCAATCTGCACCTGCATCTGCTGCTGCT
GGTGGTCGTTGACGCCCGCGATCTGGTGGAAGTCCAAGATCTCCAGGTACATCATCACCCGCCAG
GTGTCCAACGGCAAGTTGGCGTCGTTGAACAGCCAGTCGAACTTCAGCTGGCAGATCGGCTCGTC
GGTGGGGTCGTGGTACGGCTCCATGTACGGGTGCTGCAACGCCTCCGCCGCCAGGATCCGGGTCT
TGGGGTCAAACACAAGCATCTTGGCCAACAAGTCGATGGCGTCGGGCTCCACGTGGTTGGCCAGC
GCAAACCGCTCCAGGAACGGGATGGGCTCGCGGTGGGGCAACGACTGCACAAACCGAAGGGTGTT
TTCCGAGCAGATGGTGTCGATGACGTCGGGCGGCGGCGAGCCAAGCAACTCGGTGATGATCAGGA
ACTGGTGCACGTGGTCCTTGCCCGGGAACAACGGCTTGCCCTCGA



Found at i:108206 original size:20 final size:20

Alignment explanation


    Indices: 108159--108254  Score: 135
    Period size: 20  Copynumber: 4.8  Consensus size: 20

     108149 TCACCACTCA

                       *        
     108159 CACAGTCACACGGTCACAGT
          1 CACAGTCACACAGTCACAGT

                         *        
     108179 CACACAGTCACACGGTCACAGT
          1 --CACAGTCACACAGTCACAGT

                                
     108201 CACAGTCACACAGTCACAGT
          1 CACAGTCACACAGTCACAGT

                                
     108221 CACAGTCACACAGTCAC-G-
          1 CACAGTCACACAGTCACAGT

                             
     108239 CACAGTCACACA-TCAC
          1 CACAGTCACACAGTCAC

     108255 TTCTTACCCC


Statistics
Matches: 73,  Mismatches: 1, Indels: 5
        0.92            0.01        0.06

Matches are distributed among these distances:
  17    4  0.05
  18   12  0.16
  19    1  0.01
  20   36  0.49
  22   20  0.27

ACGTcount: A:0.33, C:0.38, G:0.16, T:0.14


Consensus pattern (20 bp):   
CACAGTCACACAGTCACAGT

Left flanking sequence: Indices 107659 -- 108158
GCCGAGCCTGATATACTGCACAGAGGCAACCATAACCTGACCTCCCAAGGCCACCCGTCCAGCTC
TACCCCCTGTTTATCAACGCTAGTATTTTCCTCTTCCCCGGCTGGACGCTTTCCGAGCTCCAGCA
TGATTGTGCATACTTAAGAAGAAACCCGAGAGTTTATATCCGATTGGGAATTATACATGAAACGA
TTTGCAACCAAGACAATTATACGATTTAAACCATGCAAAACGCTAGAAATACATCACAAAGACCA
ACTCGAACAAATTTTAAACCAATGCCCAACACTCATATACCACCAACCTCACAAATCATAACTAC
CTCTTCATTGTACACTTTCATTTATCTATAGCAATTATTGTCCCCTTGGGGTGAGCTAGCCCTCG
GCTACCTCGAGTCATCCTCGATCTTGAATCGGCATCTCCATAGTTCAGCTCCTAGAAACACACCG
CATCGTTTCCTATTCTCTTCATCCTCTCACCACTCTCACCACTCA


Right flanking sequence: Indices 108255 -- 108754
TTCTTACCCCTCCACCTTCTGCTTCAAGCTGTCAATCTGCACCTGCATCTGCTGCTGCTGGTGGT
CGTTGACGCCCGCGATCTGGTGGAAGTCCAAGATCTCCAGGTACATCATCACCCGCCAGGTGTCC
AACGGCAAGTTGGCGTCGTTGAACAGCCAGTCGAACTTCAGCTGGCAGATCGGCTCGTCGGTGGG
GTCGTGGTACGGCTCCATGTACGGGTGCTGCAACGCCTCCGCCGCCAGGATCCGGGTCTTGGGGT
CAAACACAAGCATCTTGGCCAACAAGTCGATGGCGTCGGGCTCCACGTGGTTGGCCAGCGCAAAC
CGCTCCAGGAACGGGATGGGCTCGCGGTGGGGCAACGACTGCACAAACCGAAGGGTGTTTTCCGA
GCAGATGGTGTCGATGACGTCGGGCGGCGGCGAGCCAAGCAACTCGGTGATGATCAGGAACTGGT
GCACGTGGTCCTTGCCCGGGAACAACGGCTTGCCCTCGATCATCT



Found at i:108237 original size:14 final size:14

Alignment explanation


    Indices: 108159--108224  Score: 91
    Period size: 14  Copynumber: 4.7  Consensus size: 14

     108149 TCACCACTCA

                       *  
     108159 CACAGTCACACGGT
          1 CACAGTCACACAGT

                          
     108173 CACAGTCACACAGT
          1 CACAGTCACACAGT

                            
     108187 CACACGGT--CACAGT
          1 CACA--GTCACACAGT

                          
     108201 CACAGTCACACAGT
          1 CACAGTCACACAGT

                      
     108215 CACAGTCACA
          1 CACAGTCACA

     108225 GTCACACAGT


Statistics
Matches: 47,  Mismatches: 1, Indels: 8
        0.84            0.02        0.14

Matches are distributed among these distances:
  12    2  0.04
  14   43  0.91
  16    2  0.04

ACGTcount: A:0.33, C:0.36, G:0.17, T:0.14


Consensus pattern (14 bp):   
CACAGTCACACAGT

Left flanking sequence: Indices 107659 -- 108158
GCCGAGCCTGATATACTGCACAGAGGCAACCATAACCTGACCTCCCAAGGCCACCCGTCCAGCTC
TACCCCCTGTTTATCAACGCTAGTATTTTCCTCTTCCCCGGCTGGACGCTTTCCGAGCTCCAGCA
TGATTGTGCATACTTAAGAAGAAACCCGAGAGTTTATATCCGATTGGGAATTATACATGAAACGA
TTTGCAACCAAGACAATTATACGATTTAAACCATGCAAAACGCTAGAAATACATCACAAAGACCA
ACTCGAACAAATTTTAAACCAATGCCCAACACTCATATACCACCAACCTCACAAATCATAACTAC
CTCTTCATTGTACACTTTCATTTATCTATAGCAATTATTGTCCCCTTGGGGTGAGCTAGCCCTCG
GCTACCTCGAGTCATCCTCGATCTTGAATCGGCATCTCCATAGTTCAGCTCCTAGAAACACACCG
CATCGTTTCCTATTCTCTTCATCCTCTCACCACTCTCACCACTCA


Right flanking sequence: Indices 108225 -- 108724
GTCACACAGTCACGCACAGTCACACATCACTTCTTACCCCTCCACCTTCTGCTTCAAGCTGTCAA
TCTGCACCTGCATCTGCTGCTGCTGGTGGTCGTTGACGCCCGCGATCTGGTGGAAGTCCAAGATC
TCCAGGTACATCATCACCCGCCAGGTGTCCAACGGCAAGTTGGCGTCGTTGAACAGCCAGTCGAA
CTTCAGCTGGCAGATCGGCTCGTCGGTGGGGTCGTGGTACGGCTCCATGTACGGGTGCTGCAACG
CCTCCGCCGCCAGGATCCGGGTCTTGGGGTCAAACACAAGCATCTTGGCCAACAAGTCGATGGCG
TCGGGCTCCACGTGGTTGGCCAGCGCAAACCGCTCCAGGAACGGGATGGGCTCGCGGTGGGGCAA
CGACTGCACAAACCGAAGGGTGTTTTCCGAGCAGATGGTGTCGATGACGTCGGGCGGCGGCGAGC
CAAGCAACTCGGTGATGATCAGGAACTGGTGCACGTGGTCCTTGC



Found at i:117331 original size:24 final size:24

Alignment explanation


    Indices: 117304--117350  Score: 76
    Period size: 24  Copynumber: 2.0  Consensus size: 24

     117294 TTTGGTTAGG

                  *        *        
     117304 GTGAGATGGGTCATGGGACGGGTT
          1 GTGAGACGGGTCATGAGACGGGTT

                                   
     117328 GTGAGACGGGTCATGAGACGGGT
          1 GTGAGACGGGTCATGAGACGGGT

     117351 CAGAGTCTGC


Statistics
Matches: 21,  Mismatches: 2, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  24   21  1.00

ACGTcount: A:0.19, C:0.11, G:0.49, T:0.21


Consensus pattern (24 bp):   
GTGAGACGGGTCATGAGACGGGTT

Left flanking sequence: Indices 116804 -- 117303
AATAGGGGGCTGGCAGGGGTGGTCTAAGGCGGGTATACGGTGGGCTACGGTGGGCTAGGTGGCGG
GGAACGTGGTTCCGCGGTGTTTATTGGGTCCGGGTTGACCGGGGATCGCGCGAAAATTATGTAGG
TCGGAAGTCGCGGAACGGCTGGCCAGCAGCGAGGTGTATGGGCAGTGGGGGCGGGGGGGGGGAGG
GGTGGACTGGGATGGTTGGGGTACCAGTGTGATAGTCTGGTAGTGTAGTGATCTGGTTATCTGGC
GAGTCGGTTCGAAGTTTCCATCACCTTTCTTTTGAAGGCACGGCTGACTCGGGCCGGTGGCGACT
AGCCCATCTTCTCGTCCCAGTAGTCGTCGCGACTGAAGCCTGGGTGCGGGGTGAACTCTGGGGGC
GCCTCGTCCGGGTGTGGCTGGCCGTAGGGGTCCCGTTGGAGCGGGTCCGTCGGGTCAGGATGGGT
AGAGTCGTGGGCGGAGCGAGAGGTATCTCGAGGTGTTTGGTTAGG


Right flanking sequence: Indices 117351 -- 117850
CAGAGTCTGCTTGAGACAGGGGCTGGACGCCAGGACTAGAGCCCGTGCCGTTGCCACCGTTTCCA
GACTCCGACGTGCCCTCCCTGGGCTCCGTCGGGCCCACAGGCGGGTGGTCGCCACCTACGTCAGC
ATGCACATCAGCTCGCGCATTGGCACGCTCCACATGCTCAGCTACCGCTTTTCTTCGCCCTTCTG
CCCGTGCCAAACCCTGTGCTCGTGGCACATCCTCGCTCTCCTCGTTCCCTCCGAAGAACTCGTAG
TTGTCAATCACAATGTCTCCGTCAGACTCCTCCTCGTGCACGCTGTACCCCACCAGCGGGGCCTC
GTCGTCAGAGTCGCCAAACGCCATCACCGCCGGGGCCGCGTGCGTCCGGGTGGCCCGCAGCCCCC
GTGAGCCCCGCAGCTCACCAGAGGGGACCGCCAGCGGCCGCACCTCGGTGTTGCGGAGCGTCAGA
AGCTCGATGTCCGTGGTGGAACTGAGCTTGGACACCTCGTCGTCG



Found at i:117335 original size:12 final size:12

Alignment explanation


    Indices: 117305--117352  Score: 60
    Period size: 12  Copynumber: 4.0  Consensus size: 12

     117295 TTGGTTAGGG

                 *      
     117305 TGAGATGGGTCA
          1 TGAGACGGGTCA

              *       **
     117317 TGGGACGGGTTG
          1 TGAGACGGGTCA

                        
     117329 TGAGACGGGTCA
          1 TGAGACGGGTCA

                        
     117341 TGAGACGGGTCA
          1 TGAGACGGGTCA

     117353 GAGTCTGCTT


Statistics
Matches: 29,  Mismatches: 7, Indels: 0
        0.81            0.19        0.00

Matches are distributed among these distances:
  12   29  1.00

ACGTcount: A:0.21, C:0.12, G:0.46, T:0.21


Consensus pattern (12 bp):   
TGAGACGGGTCA

Left flanking sequence: Indices 116805 -- 117304
ATAGGGGGCTGGCAGGGGTGGTCTAAGGCGGGTATACGGTGGGCTACGGTGGGCTAGGTGGCGGG
GAACGTGGTTCCGCGGTGTTTATTGGGTCCGGGTTGACCGGGGATCGCGCGAAAATTATGTAGGT
CGGAAGTCGCGGAACGGCTGGCCAGCAGCGAGGTGTATGGGCAGTGGGGGCGGGGGGGGGGAGGG
GTGGACTGGGATGGTTGGGGTACCAGTGTGATAGTCTGGTAGTGTAGTGATCTGGTTATCTGGCG
AGTCGGTTCGAAGTTTCCATCACCTTTCTTTTGAAGGCACGGCTGACTCGGGCCGGTGGCGACTA
GCCCATCTTCTCGTCCCAGTAGTCGTCGCGACTGAAGCCTGGGTGCGGGGTGAACTCTGGGGGCG
CCTCGTCCGGGTGTGGCTGGCCGTAGGGGTCCCGTTGGAGCGGGTCCGTCGGGTCAGGATGGGTA
GAGTCGTGGGCGGAGCGAGAGGTATCTCGAGGTGTTTGGTTAGGG


Right flanking sequence: Indices 117353 -- 117852
GAGTCTGCTTGAGACAGGGGCTGGACGCCAGGACTAGAGCCCGTGCCGTTGCCACCGTTTCCAGA
CTCCGACGTGCCCTCCCTGGGCTCCGTCGGGCCCACAGGCGGGTGGTCGCCACCTACGTCAGCAT
GCACATCAGCTCGCGCATTGGCACGCTCCACATGCTCAGCTACCGCTTTTCTTCGCCCTTCTGCC
CGTGCCAAACCCTGTGCTCGTGGCACATCCTCGCTCTCCTCGTTCCCTCCGAAGAACTCGTAGTT
GTCAATCACAATGTCTCCGTCAGACTCCTCCTCGTGCACGCTGTACCCCACCAGCGGGGCCTCGT
CGTCAGAGTCGCCAAACGCCATCACCGCCGGGGCCGCGTGCGTCCGGGTGGCCCGCAGCCCCCGT
GAGCCCCGCAGCTCACCAGAGGGGACCGCCAGCGGCCGCACCTCGGTGTTGCGGAGCGTCAGAAG
CTCGATGTCCGTGGTGGAACTGAGCTTGGACACCTCGTCGTCGTT



Found at i:122619 original size:9 final size:9

Alignment explanation


    Indices: 122605--122631  Score: 54
    Period size: 9  Copynumber: 3.0  Consensus size: 9

     122595 ACGGGTACCA

                     
     122605 GCAGCAGCC
          1 GCAGCAGCC

                     
     122614 GCAGCAGCC
          1 GCAGCAGCC

                     
     122623 GCAGCAGCC
          1 GCAGCAGCC

     122632 CAACAATGGC


Statistics
Matches: 18,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   9   18  1.00

ACGTcount: A:0.22, C:0.44, G:0.33, T:0.00


Consensus pattern (9 bp):   
GCAGCAGCC

Left flanking sequence: Indices 122105 -- 122604
GCCATAACCCACCGACCTCTTGATTACCTTTTTCTTATCGCTGTATACACTCCGGGGAATACCGT
GGCCAAGATCAGAGCAACCAACAACAGGGGTGCTCAATGGTTACGACCGCTCCCACGTCCCTGTG
TCCCCCCTCCTCTCTCCACTTTCCACACCATGTCTCGCCCGATCTGCTCGGATGGTACGCAATCA
CCACTACAGTAGTCAATCCACCTCCACCATCCAAGTGATCCACGCCCGCTACGCCCACTCACCAG
CCACACAACCAACGCCCCGTAAAGCCACGTACACCCGCCCACTGCTCCACTTGTCCCTCGCCCAT
CCCTCCACCCATTCCTCCACCCACCACCCACCACCCACACTTCGCCACTGCCACCGCTCCTGCAC
ACTGCCTCGGCTGGCAACCGCAAATTTCGACACTCACCACCGTAGCCTGCCAACATGTACAACCC
GTACCAAGGGGGGTTCCCGCCCCAGCAAACGGGCTACGGGTACCA


Right flanking sequence: Indices 122632 -- 123131
CAACAATGGCTTCTACCCACCGCAACCCGCGCAGCAGCCGCAGCAAACGGGCTTCTACCAGATGC
CTCAACAGCAGTTGTACCCGCTGCAGACGTTCCAGCCGCAGCAGACGGCAATGCCGCCCCAGGGG
CTTGCGCAGCAGCCCACGGGGTACCTCGTGACCCAGCCCACCGGGTTCCAGGGCGCGCCGTCGGT
GGTGGAGAACGTCGATCTCAAGATCCCCGCCATCCGGCTCTCGTTCATCACCGCGGACGACCAGA
AGAAGTTCGAGCACTTGTTCCGCACCGCCGTGCCCAAGGGCGAGACCGCCATCTCCGGCGACGCC
GCGTCCAACATCCTCTTGCGGCTGGGGTTGCCTCCGGTCACGTTGGCCGACATCTGGCTGTTGCT
GGACTTCAACAAGCTGGGGCTGCTCTTGTTCCCCGAGTTTGCCTTGGCGTTGCACTTCTGCTCCA
TGGCGAAGCGGGGCGACCTGATCCCGCGGCTGGTGCCCCAGAAGT



Found at i:123291 original size:24 final size:24

Alignment explanation


    Indices: 123264--123309  Score: 67
    Period size: 24  Copynumber: 1.9  Consensus size: 24

     123254 ATGAACCCGC

                                     
     123264 CGCAGATCGGG-GCCCAAACCGGTG
          1 CGCAGA-CGGGTGCCCAAACCGGTG

                            *     
     123288 CGCAGACGGGTGCCCAGACCGG
          1 CGCAGACGGGTGCCCAAACCGG

     123310 GTACGGGATG


Statistics
Matches: 20,  Mismatches: 1, Indels: 2
        0.87            0.04        0.09

Matches are distributed among these distances:
  23    4  0.20
  24   16  0.80

ACGTcount: A:0.20, C:0.35, G:0.39, T:0.07


Consensus pattern (24 bp):   
CGCAGACGGGTGCCCAAACCGGTG

Left flanking sequence: Indices 122764 -- 123263
TGCGCAGCAGCCCACGGGGTACCTCGTGACCCAGCCCACCGGGTTCCAGGGCGCGCCGTCGGTGG
TGGAGAACGTCGATCTCAAGATCCCCGCCATCCGGCTCTCGTTCATCACCGCGGACGACCAGAAG
AAGTTCGAGCACTTGTTCCGCACCGCCGTGCCCAAGGGCGAGACCGCCATCTCCGGCGACGCCGC
GTCCAACATCCTCTTGCGGCTGGGGTTGCCTCCGGTCACGTTGGCCGACATCTGGCTGTTGCTGG
ACTTCAACAAGCTGGGGCTGCTCTTGTTCCCCGAGTTTGCCTTGGCGTTGCACTTCTGCTCCATG
GCGAAGCGGGGCGACCTGATCCCGCGGCTGGTGCCCCAGAAGTGGCTGAACGAGGTCCAGAGCTT
TATTGATGCCATTGCGCTCTCGGTGCCCGACGACCCGGCCATCAAGTTGGCCAACACGCCGTTTG
CGCAGTTTGCGCCGCCCAAGCCCGACAACGACTGGATGAACCCGC


Right flanking sequence: Indices 123310 -- 123809
GTACGGGATGAGTGCCCAGCGCACCGGCGGTGGCTCGTTAGTGCCGTTGCAGCCGCAGCGGACGC
TGGGATTGGTGCCTGCGCAGCGCACCGGCGGGTTGATCCCAGTGCAAAAGACCGGGCCGTTGCAG
GCACAGGGCACGGGCTACAACCGCATGCCCGCGCAGGGCACCGGCTACCCGGGTCAGCAGCCCCA
GGGCACCGGGTTCAACCAGCCGTTGCAGAGCCAGGGAACCGGTTACCAGCCCTTGCAGAGCCAGG
GCACGGGCTACCAACCCCTTCAGCTGCAGGGCACGGGCTACCAACCGCTCCAGGCCCAGGGCACC
GGTTACGGGTTGCAGCCGCAGTCGACGGGGTACTTGCAGCTGATGCCCACGGGCCAGCCGGGCCA
GTGGGGCTTTGTCAACACCCCGACGGGCGGGCTCCCGGGCCTCCTGGGCATGCAGCAGGGCTTCT
TGCCGTCGCAAAAGACGGGCAACGTCCAGCAGATGATGCAGGCGA



Found at i:123582 original size:30 final size:30

Alignment explanation


    Indices: 123519--123612  Score: 102
    Period size: 30  Copynumber: 3.1  Consensus size: 30

     123509 ACCGGGTTCA

                   *              *  *  * 
     123519 ACCAGCCGTTGCAGAGCCAGGGAACCGGTT
          1 ACCAGCCCTTGCAGAGCCAGGGCACGGGCT

                                          
     123549 ACCAGCCCTTGCAGAGCCAGGGCACGGGCT
          1 ACCAGCCCTTGCAGAGCCAGGGCACGGGCT

                 *          *               
     123579 ACCAACCCCTT-CAGCTG-CAGGGCACGGGCT
          1 ACC-AGCCCTTGCAG-AGCCAGGGCACGGGCT

                
     123609 ACCA
          1 ACCA

     123613 ACCGCTCCAG


Statistics
Matches: 56,  Mismatches: 6, Indels: 5
        0.84            0.09        0.07

Matches are distributed among these distances:
  29    1  0.02
  30   48  0.86
  31    7  0.12

ACGTcount: A:0.22, C:0.36, G:0.30, T:0.12


Consensus pattern (30 bp):   
ACCAGCCCTTGCAGAGCCAGGGCACGGGCT

Left flanking sequence: Indices 123019 -- 123518
GCTGGACTTCAACAAGCTGGGGCTGCTCTTGTTCCCCGAGTTTGCCTTGGCGTTGCACTTCTGCT
CCATGGCGAAGCGGGGCGACCTGATCCCGCGGCTGGTGCCCCAGAAGTGGCTGAACGAGGTCCAG
AGCTTTATTGATGCCATTGCGCTCTCGGTGCCCGACGACCCGGCCATCAAGTTGGCCAACACGCC
GTTTGCGCAGTTTGCGCCGCCCAAGCCCGACAACGACTGGATGAACCCGCCGCAGATCGGGGCCC
AAACCGGTGCGCAGACGGGTGCCCAGACCGGGTACGGGATGAGTGCCCAGCGCACCGGCGGTGGC
TCGTTAGTGCCGTTGCAGCCGCAGCGGACGCTGGGATTGGTGCCTGCGCAGCGCACCGGCGGGTT
GATCCCAGTGCAAAAGACCGGGCCGTTGCAGGCACAGGGCACGGGCTACAACCGCATGCCCGCGC
AGGGCACCGGCTACCCGGGTCAGCAGCCCCAGGGCACCGGGTTCA


Right flanking sequence: Indices 123613 -- 124112
ACCGCTCCAGGCCCAGGGCACCGGTTACGGGTTGCAGCCGCAGTCGACGGGGTACTTGCAGCTGA
TGCCCACGGGCCAGCCGGGCCAGTGGGGCTTTGTCAACACCCCGACGGGCGGGCTCCCGGGCCTC
CTGGGCATGCAGCAGGGCTTCTTGCCGTCGCAAAAGACGGGCAACGTCCAGCAGATGATGCAGGC
GACGCCCCAGCAGCAGCAGAACATCACCTGGGCCATCACCAAGCAGGAGAAGCAGATCTACGACG
GCATCTTCAACGCGTGGGACCCGCAGCGCCGCGGCTACATCGAAGGCTCGGACGCACTCAAGGTG
TTCGGCAAGCTGGGCCTCGCCCGCCCGGACCTCGAGCTGATCTGGAACTTGGCCGACACCAACGA
CCGCGGCAAATTGAACAAAGACGAGTTTGCGGTGGCGATGCACTTGGTGTACCGGCGGCTCCACG
GGTTCGAGACGCCGCTCCGGTTGCCGCCCGAGCTCGTGCCGCCGT



Found at i:123630 original size:30 final size:30

Alignment explanation


    Indices: 123565--123633  Score: 95
    Period size: 30  Copynumber: 2.3  Consensus size: 30

     123555 CCTTGCAGAG

                                    *     
     123565 CCAGGGCACGGGCTACCAACCCCTTCAGCT
          1 CCAGGGCACGGGCTACCAACCCCTCCAGCT

            *                    *         
     123595 GCAGGGCACGGGCTACCAACCGCTCCAGGC-
          1 CCAGGGCACGGGCTACCAACCCCTCCA-GCT

                     
     123625 CCAGGGCAC
          1 CCAGGGCAC

     123634 CGGTTACGGG


Statistics
Matches: 34,  Mismatches: 4, Indels: 2
        0.85            0.10        0.05

Matches are distributed among these distances:
  30   32  0.94
  31    2  0.06

ACGTcount: A:0.20, C:0.42, G:0.29, T:0.09


Consensus pattern (30 bp):   
CCAGGGCACGGGCTACCAACCCCTCCAGCT

Left flanking sequence: Indices 123065 -- 123564
TTGGCGTTGCACTTCTGCTCCATGGCGAAGCGGGGCGACCTGATCCCGCGGCTGGTGCCCCAGAA
GTGGCTGAACGAGGTCCAGAGCTTTATTGATGCCATTGCGCTCTCGGTGCCCGACGACCCGGCCA
TCAAGTTGGCCAACACGCCGTTTGCGCAGTTTGCGCCGCCCAAGCCCGACAACGACTGGATGAAC
CCGCCGCAGATCGGGGCCCAAACCGGTGCGCAGACGGGTGCCCAGACCGGGTACGGGATGAGTGC
CCAGCGCACCGGCGGTGGCTCGTTAGTGCCGTTGCAGCCGCAGCGGACGCTGGGATTGGTGCCTG
CGCAGCGCACCGGCGGGTTGATCCCAGTGCAAAAGACCGGGCCGTTGCAGGCACAGGGCACGGGC
TACAACCGCATGCCCGCGCAGGGCACCGGCTACCCGGGTCAGCAGCCCCAGGGCACCGGGTTCAA
CCAGCCGTTGCAGAGCCAGGGAACCGGTTACCAGCCCTTGCAGAG


Right flanking sequence: Indices 123634 -- 124133
CGGTTACGGGTTGCAGCCGCAGTCGACGGGGTACTTGCAGCTGATGCCCACGGGCCAGCCGGGCC
AGTGGGGCTTTGTCAACACCCCGACGGGCGGGCTCCCGGGCCTCCTGGGCATGCAGCAGGGCTTC
TTGCCGTCGCAAAAGACGGGCAACGTCCAGCAGATGATGCAGGCGACGCCCCAGCAGCAGCAGAA
CATCACCTGGGCCATCACCAAGCAGGAGAAGCAGATCTACGACGGCATCTTCAACGCGTGGGACC
CGCAGCGCCGCGGCTACATCGAAGGCTCGGACGCACTCAAGGTGTTCGGCAAGCTGGGCCTCGCC
CGCCCGGACCTCGAGCTGATCTGGAACTTGGCCGACACCAACGACCGCGGCAAATTGAACAAAGA
CGAGTTTGCGGTGGCGATGCACTTGGTGTACCGGCGGCTCCACGGGTTCGAGACGCCGCTCCGGT
TGCCGCCCGAGCTCGTGCCGCCGTCGCACAAGTACCTTGACGAGC



Found at i:125080 original size:21 final size:21

Alignment explanation


    Indices: 125055--125105  Score: 66
    Period size: 21  Copynumber: 2.4  Consensus size: 21

     125045 TCTCAGCCGT

                    *           *
     125055 CTCAGGGTTCTCAAGGTCAGG
          1 CTCAGGGTCCTCAAGGTCAGC

                         *       
     125076 CTCAGGGTCCTCAGGGTCAGC
          1 CTCAGGGTCCTCAAGGTCAGC

             *       
     125097 CCCAGGGTC
          1 CTCAGGGTC

     125106 AGTCTCAGGG


Statistics
Matches: 26,  Mismatches: 4, Indels: 0
        0.87            0.13        0.00

Matches are distributed among these distances:
  21   26  1.00

ACGTcount: A:0.16, C:0.31, G:0.33, T:0.20


Consensus pattern (21 bp):   
CTCAGGGTCCTCAAGGTCAGC

Left flanking sequence: Indices 124555 -- 125054
GATCGGCAAGGTCAACACCGAGCTTGCGCAGGCCAAGATCGAGCTTGCCAAGGGCCGGTTGGCCA
AGGAGCACCCCGAGTGGAAGCCCGGCGACGACGAGGCGCTGATCGTGGGCACCGGGCCCAACGGC
GAGGTCACCGACGCCGACCGGCGCAAGTGGAAGCTGAAGCAGTTGTTGCGGCAGCGGATGGCGGC
GCTCACCGGCGGGCTGTCGCAGCTGGGCGCCAACGCGGACTTGGACGCCCAGTTGAAGCGGGCGA
CGGACCAGATCACCCAGGAGCAGCGGTCGCAGGCGGAGCAGATCCGCGAGATCGAGGAGCTGATC
AAGGACCTCGAGGACGGGTGTGCGGTGCACGTCAAGTTGACCAACCAGGAGGAGAGCGACTACCG
CAAGTGGGAGCTTGGCGAGGGGGTATCTGATCTGGTGAAGCAGTTTGTGAACGAGTTGAAGCAGT
TCCAGGGCGCGGGAGGCAACCAGGCCAAGAGCCAGTCTCAGCCGT


Right flanking sequence: Indices 125106 -- 125605
AGTCTCAGGGCCAGCCTCAGGGCCATGCGGTGGCCAGCCCGGCAGCAGCCTCGCCCACTCCCACG
GGCGGTGCTCAGTACAACACGCCCGAGGAGCGCGCGGCCTACATCAAGGCCCAGGCCGCCAAGCG
GATGCAGGAGCGGTTGGCGGCGTTGGGGATCAAGGGCAAGCTGGCGGACACCGGGTCGTCGTTGG
CGTCTCCGGTGCAGCAGCCCGCTCTGCCGAAGCCAGCGGCCCCGCCGGCTCCTCCCAAGCCCAGA
GCCCAAGCTCAGGCCCACCAGGGCCAGGCTCAGGCTCAACAAGGCCAGGCTCAACAGGGCCAGGC
TCAGACTCAACCACAGGCTCATTCTCAGCCTCAGCAGTCCCAGCCTCAGTCCCAGTCTCAGTCCC
AGTCTCAGTCTCAGCCCCAGTCTCAATCCCAGGCTCACGACGACTCTTCTGAGGACGACGACCCG
GAGTACGAGGCGCTCCTCCAGCAAAAGAAGGCGTTGGAGGCCAAG



Found at i:125084 original size:12 final size:12

Alignment explanation


    Indices: 125064--125127  Score: 62
    Period size: 12  Copynumber: 5.6  Consensus size: 12

     125054 TCTCAGGGTT

                *      *
     125064 CTCAAGGTCAGG
          1 CTCAGGGTCAGC

                        
     125076 CTCAGGGT---C
          1 CTCAGGGTCAGC

                        
     125085 CTCAGGGTCAGC
          1 CTCAGGGTCAGC

             *         *
     125097 CCCAGGGTCAGT
          1 CTCAGGGTCAGC

                   *    
     125109 CTCAGGGCCAGC
          1 CTCAGGGTCAGC

                   
     125121 CTCAGGG
          1 CTCAGGG

     125128 CCATGCGGTG


Statistics
Matches: 42,  Mismatches: 7, Indels: 6
        0.76            0.13        0.11

Matches are distributed among these distances:
   9    8  0.19
  12   34  0.81

ACGTcount: A:0.17, C:0.33, G:0.34, T:0.16


Consensus pattern (12 bp):   
CTCAGGGTCAGC

Left flanking sequence: Indices 124564 -- 125063
GGTCAACACCGAGCTTGCGCAGGCCAAGATCGAGCTTGCCAAGGGCCGGTTGGCCAAGGAGCACC
CCGAGTGGAAGCCCGGCGACGACGAGGCGCTGATCGTGGGCACCGGGCCCAACGGCGAGGTCACC
GACGCCGACCGGCGCAAGTGGAAGCTGAAGCAGTTGTTGCGGCAGCGGATGGCGGCGCTCACCGG
CGGGCTGTCGCAGCTGGGCGCCAACGCGGACTTGGACGCCCAGTTGAAGCGGGCGACGGACCAGA
TCACCCAGGAGCAGCGGTCGCAGGCGGAGCAGATCCGCGAGATCGAGGAGCTGATCAAGGACCTC
GAGGACGGGTGTGCGGTGCACGTCAAGTTGACCAACCAGGAGGAGAGCGACTACCGCAAGTGGGA
GCTTGGCGAGGGGGTATCTGATCTGGTGAAGCAGTTTGTGAACGAGTTGAAGCAGTTCCAGGGCG
CGGGAGGCAACCAGGCCAAGAGCCAGTCTCAGCCGTCTCAGGGTT


Right flanking sequence: Indices 125128 -- 125627
CCATGCGGTGGCCAGCCCGGCAGCAGCCTCGCCCACTCCCACGGGCGGTGCTCAGTACAACACGC
CCGAGGAGCGCGCGGCCTACATCAAGGCCCAGGCCGCCAAGCGGATGCAGGAGCGGTTGGCGGCG
TTGGGGATCAAGGGCAAGCTGGCGGACACCGGGTCGTCGTTGGCGTCTCCGGTGCAGCAGCCCGC
TCTGCCGAAGCCAGCGGCCCCGCCGGCTCCTCCCAAGCCCAGAGCCCAAGCTCAGGCCCACCAGG
GCCAGGCTCAGGCTCAACAAGGCCAGGCTCAACAGGGCCAGGCTCAGACTCAACCACAGGCTCAT
TCTCAGCCTCAGCAGTCCCAGCCTCAGTCCCAGTCTCAGTCCCAGTCTCAGTCTCAGCCCCAGTC
TCAATCCCAGGCTCACGACGACTCTTCTGAGGACGACGACCCGGAGTACGAGGCGCTCCTCCAGC
AAAAGAAGGCGTTGGAGGCCAAGGAGCGCGAGCGTGAGCAGCGCC



Found at i:125416 original size:15 final size:15

Alignment explanation


    Indices: 125391--125433  Score: 68
    Period size: 15  Copynumber: 2.8  Consensus size: 15

     125381 CACCAGGGCC

                            
     125391 AGGCTCAGGCTCAACA
          1 AGGC-CAGGCTCAACA

                           
     125407 AGGCCAGGCTCAACA
          1 AGGCCAGGCTCAACA

            *           
     125422 GGGCCAGGCTCA
          1 AGGCCAGGCTCA

     125434 GACTCAACCA


Statistics
Matches: 26,  Mismatches: 1, Indels: 1
        0.93            0.04        0.04

Matches are distributed among these distances:
  15   22  0.85
  16    4  0.15

ACGTcount: A:0.28, C:0.33, G:0.30, T:0.09


Consensus pattern (15 bp):   
AGGCCAGGCTCAACA

Left flanking sequence: Indices 124891 -- 125390
GGACGGGTGTGCGGTGCACGTCAAGTTGACCAACCAGGAGGAGAGCGACTACCGCAAGTGGGAGC
TTGGCGAGGGGGTATCTGATCTGGTGAAGCAGTTTGTGAACGAGTTGAAGCAGTTCCAGGGCGCG
GGAGGCAACCAGGCCAAGAGCCAGTCTCAGCCGTCTCAGGGTTCTCAAGGTCAGGCTCAGGGTCC
TCAGGGTCAGCCCCAGGGTCAGTCTCAGGGCCAGCCTCAGGGCCATGCGGTGGCCAGCCCGGCAG
CAGCCTCGCCCACTCCCACGGGCGGTGCTCAGTACAACACGCCCGAGGAGCGCGCGGCCTACATC
AAGGCCCAGGCCGCCAAGCGGATGCAGGAGCGGTTGGCGGCGTTGGGGATCAAGGGCAAGCTGGC
GGACACCGGGTCGTCGTTGGCGTCTCCGGTGCAGCAGCCCGCTCTGCCGAAGCCAGCGGCCCCGC
CGGCTCCTCCCAAGCCCAGAGCCCAAGCTCAGGCCCACCAGGGCC


Right flanking sequence: Indices 125434 -- 125933
GACTCAACCACAGGCTCATTCTCAGCCTCAGCAGTCCCAGCCTCAGTCCCAGTCTCAGTCCCAGT
CTCAGTCTCAGCCCCAGTCTCAATCCCAGGCTCACGACGACTCTTCTGAGGACGACGACCCGGAG
TACGAGGCGCTCCTCCAGCAAAAGAAGGCGTTGGAGGCCAAGGAGCGCGAGCGTGAGCAGCGCCG
CCGCGAGCGCGAGGAGCGCAAGGCCAAGCTCAAGCAGGAGATGGCCGCGTACGAGTCGAAGCCCA
ACGACGACGACGACGACGAGCCGGTGATGGCTGCGCCCACGTACCTGGCGAAGCTGGCCAAGAAG
GACGAGCCCAAGAACCAGCCCAGCCAGTCCGCGGCCAACAACCAGCCCGAAGCCACCAACGCGGA
CAATGCCACCAACGCGGACAATGCCACCAACCAGGCCCAGGCCACCAACCAGGAACCCAAGGCCG
AGCCCGAGCAGCCCAAGGAACAGCCCCAGCCCGAACGCAAGCACT



Found at i:125439 original size:21 final size:21

Alignment explanation


    Indices: 125372--125441  Score: 71
    Period size: 21  Copynumber: 3.6  Consensus size: 21

     125362 CAGAGCCCAA

                    *  *         
     125372 GCTCAGGCCCACCAGGGCCAG
          1 GCTCAGGCTCAACAGGGCCAG

                                 
     125393 GCTCAGGCTCAACA-----AG
          1 GCTCAGGCTCAACAGGGCCAG

                                 
     125409 GC-CAGGCTCAACAGGGCCAG
          1 GCTCAGGCTCAACAGGGCCAG

                  *      
     125429 GCTCAGACTCAAC
          1 GCTCAGGCTCAAC

     125442 CACAGGCTCA


Statistics
Matches: 40,  Mismatches: 3, Indels: 12
        0.73            0.05        0.22

Matches are distributed among these distances:
  15   11  0.28
  16    4  0.10
  20    4  0.10
  21   21  0.52

ACGTcount: A:0.26, C:0.37, G:0.29, T:0.09


Consensus pattern (21 bp):   
GCTCAGGCTCAACAGGGCCAG

Left flanking sequence: Indices 124872 -- 125371
AGCTGATCAAGGACCTCGAGGACGGGTGTGCGGTGCACGTCAAGTTGACCAACCAGGAGGAGAGC
GACTACCGCAAGTGGGAGCTTGGCGAGGGGGTATCTGATCTGGTGAAGCAGTTTGTGAACGAGTT
GAAGCAGTTCCAGGGCGCGGGAGGCAACCAGGCCAAGAGCCAGTCTCAGCCGTCTCAGGGTTCTC
AAGGTCAGGCTCAGGGTCCTCAGGGTCAGCCCCAGGGTCAGTCTCAGGGCCAGCCTCAGGGCCAT
GCGGTGGCCAGCCCGGCAGCAGCCTCGCCCACTCCCACGGGCGGTGCTCAGTACAACACGCCCGA
GGAGCGCGCGGCCTACATCAAGGCCCAGGCCGCCAAGCGGATGCAGGAGCGGTTGGCGGCGTTGG
GGATCAAGGGCAAGCTGGCGGACACCGGGTCGTCGTTGGCGTCTCCGGTGCAGCAGCCCGCTCTG
CCGAAGCCAGCGGCCCCGCCGGCTCCTCCCAAGCCCAGAGCCCAA


Right flanking sequence: Indices 125442 -- 125941
CACAGGCTCATTCTCAGCCTCAGCAGTCCCAGCCTCAGTCCCAGTCTCAGTCCCAGTCTCAGTCT
CAGCCCCAGTCTCAATCCCAGGCTCACGACGACTCTTCTGAGGACGACGACCCGGAGTACGAGGC
GCTCCTCCAGCAAAAGAAGGCGTTGGAGGCCAAGGAGCGCGAGCGTGAGCAGCGCCGCCGCGAGC
GCGAGGAGCGCAAGGCCAAGCTCAAGCAGGAGATGGCCGCGTACGAGTCGAAGCCCAACGACGAC
GACGACGACGAGCCGGTGATGGCTGCGCCCACGTACCTGGCGAAGCTGGCCAAGAAGGACGAGCC
CAAGAACCAGCCCAGCCAGTCCGCGGCCAACAACCAGCCCGAAGCCACCAACGCGGACAATGCCA
CCAACGCGGACAATGCCACCAACCAGGCCCAGGCCACCAACCAGGAACCCAAGGCCGAGCCCGAG
CAGCCCAAGGAACAGCCCCAGCCCGAACGCAAGCACTTCAACCCG



Found at i:125480 original size:12 final size:12

Alignment explanation


    Indices: 125465--125517  Score: 70
    Period size: 12  Copynumber: 4.4  Consensus size: 12

     125455 TCAGCCTCAG

                        
     125465 CAGTCCCAGCCT
          1 CAGTCCCAGCCT

                     *  
     125477 CAGTCCCAGTCT
          1 CAGTCCCAGCCT

                     *  
     125489 CAGTCCCAGTCT
          1 CAGTCCCAGCCT

                 *     *
     125501 CAGTCTCAGCCC
          1 CAGTCCCAGCCT

                 
     125513 CAGTC
          1 CAGTC

     125518 TCAATCCCAG


Statistics
Matches: 37,  Mismatches: 4, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  12   37  1.00

ACGTcount: A:0.17, C:0.45, G:0.17, T:0.21


Consensus pattern (12 bp):   
CAGTCCCAGCCT

Left flanking sequence: Indices 124965 -- 125464
GGGTATCTGATCTGGTGAAGCAGTTTGTGAACGAGTTGAAGCAGTTCCAGGGCGCGGGAGGCAAC
CAGGCCAAGAGCCAGTCTCAGCCGTCTCAGGGTTCTCAAGGTCAGGCTCAGGGTCCTCAGGGTCA
GCCCCAGGGTCAGTCTCAGGGCCAGCCTCAGGGCCATGCGGTGGCCAGCCCGGCAGCAGCCTCGC
CCACTCCCACGGGCGGTGCTCAGTACAACACGCCCGAGGAGCGCGCGGCCTACATCAAGGCCCAG
GCCGCCAAGCGGATGCAGGAGCGGTTGGCGGCGTTGGGGATCAAGGGCAAGCTGGCGGACACCGG
GTCGTCGTTGGCGTCTCCGGTGCAGCAGCCCGCTCTGCCGAAGCCAGCGGCCCCGCCGGCTCCTC
CCAAGCCCAGAGCCCAAGCTCAGGCCCACCAGGGCCAGGCTCAGGCTCAACAAGGCCAGGCTCAA
CAGGGCCAGGCTCAGACTCAACCACAGGCTCATTCTCAGCCTCAG


Right flanking sequence: Indices 125518 -- 126017
TCAATCCCAGGCTCACGACGACTCTTCTGAGGACGACGACCCGGAGTACGAGGCGCTCCTCCAGC
AAAAGAAGGCGTTGGAGGCCAAGGAGCGCGAGCGTGAGCAGCGCCGCCGCGAGCGCGAGGAGCGC
AAGGCCAAGCTCAAGCAGGAGATGGCCGCGTACGAGTCGAAGCCCAACGACGACGACGACGACGA
GCCGGTGATGGCTGCGCCCACGTACCTGGCGAAGCTGGCCAAGAAGGACGAGCCCAAGAACCAGC
CCAGCCAGTCCGCGGCCAACAACCAGCCCGAAGCCACCAACGCGGACAATGCCACCAACGCGGAC
AATGCCACCAACCAGGCCCAGGCCACCAACCAGGAACCCAAGGCCGAGCCCGAGCAGCCCAAGGA
ACAGCCCCAGCCCGAACGCAAGCACTTCAACCCGTTTGCCAAGATGGCCACGGGCCAGCCCCAGG
CGCTGCCCGTCCAGGCTCCCGCCAAGCAGTTCTTCTCGCTGGAGC



Found at i:125492 original size:6 final size:6

Alignment explanation


    Indices: 125465--125520  Score: 58
    Period size: 6  Copynumber: 9.3  Consensus size: 6

     125455 TCAGCCTCAG

                 *    *        *             *                  * *
     125465 CAGTCC CAGCCT CAGTCC CAGTCT CAGTCC CAGTCT CAGTCT CAGCCC
          1 CAGTCT CAGTCT CAGTCT CAGTCT CAGTCT CAGTCT CAGTCT CAGTCT

                     
     125513 CAGTCT CA
          1 CAGTCT CA

     125521 ATCCCAGGCT


Statistics
Matches: 39,  Mismatches: 11, Indels: 0
        0.78            0.22        0.00

Matches are distributed among these distances:
   6   39  1.00

ACGTcount: A:0.18, C:0.45, G:0.16, T:0.21


Consensus pattern (6 bp):   
CAGTCT

Left flanking sequence: Indices 124965 -- 125464
GGGTATCTGATCTGGTGAAGCAGTTTGTGAACGAGTTGAAGCAGTTCCAGGGCGCGGGAGGCAAC
CAGGCCAAGAGCCAGTCTCAGCCGTCTCAGGGTTCTCAAGGTCAGGCTCAGGGTCCTCAGGGTCA
GCCCCAGGGTCAGTCTCAGGGCCAGCCTCAGGGCCATGCGGTGGCCAGCCCGGCAGCAGCCTCGC
CCACTCCCACGGGCGGTGCTCAGTACAACACGCCCGAGGAGCGCGCGGCCTACATCAAGGCCCAG
GCCGCCAAGCGGATGCAGGAGCGGTTGGCGGCGTTGGGGATCAAGGGCAAGCTGGCGGACACCGG
GTCGTCGTTGGCGTCTCCGGTGCAGCAGCCCGCTCTGCCGAAGCCAGCGGCCCCGCCGGCTCCTC
CCAAGCCCAGAGCCCAAGCTCAGGCCCACCAGGGCCAGGCTCAGGCTCAACAAGGCCAGGCTCAA
CAGGGCCAGGCTCAGACTCAACCACAGGCTCATTCTCAGCCTCAG


Right flanking sequence: Indices 125521 -- 126020
ATCCCAGGCTCACGACGACTCTTCTGAGGACGACGACCCGGAGTACGAGGCGCTCCTCCAGCAAA
AGAAGGCGTTGGAGGCCAAGGAGCGCGAGCGTGAGCAGCGCCGCCGCGAGCGCGAGGAGCGCAAG
GCCAAGCTCAAGCAGGAGATGGCCGCGTACGAGTCGAAGCCCAACGACGACGACGACGACGAGCC
GGTGATGGCTGCGCCCACGTACCTGGCGAAGCTGGCCAAGAAGGACGAGCCCAAGAACCAGCCCA
GCCAGTCCGCGGCCAACAACCAGCCCGAAGCCACCAACGCGGACAATGCCACCAACGCGGACAAT
GCCACCAACCAGGCCCAGGCCACCAACCAGGAACCCAAGGCCGAGCCCGAGCAGCCCAAGGAACA
GCCCCAGCCCGAACGCAAGCACTTCAACCCGTTTGCCAAGATGGCCACGGGCCAGCCCCAGGCGC
TGCCCGTCCAGGCTCCCGCCAAGCAGTTCTTCTCGCTGGAGCCCA



Found at i:125498 original size:18 final size:17

Alignment explanation


    Indices: 125465--125527  Score: 63
    Period size: 18  Copynumber: 3.5  Consensus size: 17

     125455 TCAGCCTCAG

                             *
     125465 CAGTCCCAGCCTCAGTCC
          1 CAGTCCCAGCC-CAGTCT

                 *            
     125483 CAGTCTCAGTCCCAGTCT
          1 CAGTCCCAG-CCCAGTCT

                 *            
     125501 CAGTCTCAGCCCCAGTCT
          1 CAGTCCCAG-CCCAGTCT

              *      
     125519 CAATCCCAG
          1 CAGTCCCAG

     125528 GCTCACGACG


Statistics
Matches: 39,  Mismatches: 5, Indels: 2
        0.85            0.11        0.04

Matches are distributed among these distances:
  18   37  0.95
  19    2  0.05

ACGTcount: A:0.19, C:0.44, G:0.16, T:0.21


Consensus pattern (17 bp):   
CAGTCCCAGCCCAGTCT

Left flanking sequence: Indices 124965 -- 125464
GGGTATCTGATCTGGTGAAGCAGTTTGTGAACGAGTTGAAGCAGTTCCAGGGCGCGGGAGGCAAC
CAGGCCAAGAGCCAGTCTCAGCCGTCTCAGGGTTCTCAAGGTCAGGCTCAGGGTCCTCAGGGTCA
GCCCCAGGGTCAGTCTCAGGGCCAGCCTCAGGGCCATGCGGTGGCCAGCCCGGCAGCAGCCTCGC
CCACTCCCACGGGCGGTGCTCAGTACAACACGCCCGAGGAGCGCGCGGCCTACATCAAGGCCCAG
GCCGCCAAGCGGATGCAGGAGCGGTTGGCGGCGTTGGGGATCAAGGGCAAGCTGGCGGACACCGG
GTCGTCGTTGGCGTCTCCGGTGCAGCAGCCCGCTCTGCCGAAGCCAGCGGCCCCGCCGGCTCCTC
CCAAGCCCAGAGCCCAAGCTCAGGCCCACCAGGGCCAGGCTCAGGCTCAACAAGGCCAGGCTCAA
CAGGGCCAGGCTCAGACTCAACCACAGGCTCATTCTCAGCCTCAG


Right flanking sequence: Indices 125528 -- 126027
GCTCACGACGACTCTTCTGAGGACGACGACCCGGAGTACGAGGCGCTCCTCCAGCAAAAGAAGGC
GTTGGAGGCCAAGGAGCGCGAGCGTGAGCAGCGCCGCCGCGAGCGCGAGGAGCGCAAGGCCAAGC
TCAAGCAGGAGATGGCCGCGTACGAGTCGAAGCCCAACGACGACGACGACGACGAGCCGGTGATG
GCTGCGCCCACGTACCTGGCGAAGCTGGCCAAGAAGGACGAGCCCAAGAACCAGCCCAGCCAGTC
CGCGGCCAACAACCAGCCCGAAGCCACCAACGCGGACAATGCCACCAACGCGGACAATGCCACCA
ACCAGGCCCAGGCCACCAACCAGGAACCCAAGGCCGAGCCCGAGCAGCCCAAGGAACAGCCCCAG
CCCGAACGCAAGCACTTCAACCCGTTTGCCAAGATGGCCACGGGCCAGCCCCAGGCGCTGCCCGT
CCAGGCTCCCGCCAAGCAGTTCTTCTCGCTGGAGCCCAAGCCCGC



Found at i:125509 original size:30 final size:30

Alignment explanation


    Indices: 125465--125532  Score: 91
    Period size: 30  Copynumber: 2.3  Consensus size: 30

     125455 TCAGCCTCAG

                 *         *          *   
     125465 CAGTCCCAGCCTCAGTCCCAGTCTCAGTCC
          1 CAGTCTCAGCCTCAGCCCCAGTCTCAATCC

                     *                    
     125495 CAGTCTCAGTCTCAGCCCCAGTCTCAATCC
          1 CAGTCTCAGCCTCAGCCCCAGTCTCAATCC

               *    
     125525 CAGGCTCA
          1 CAGTCTCA

     125533 CGACGACTCT


Statistics
Matches: 33,  Mismatches: 5, Indels: 0
        0.87            0.13        0.00

Matches are distributed among these distances:
  30   33  1.00

ACGTcount: A:0.19, C:0.44, G:0.16, T:0.21


Consensus pattern (30 bp):   
CAGTCTCAGCCTCAGCCCCAGTCTCAATCC

Left flanking sequence: Indices 124965 -- 125464
GGGTATCTGATCTGGTGAAGCAGTTTGTGAACGAGTTGAAGCAGTTCCAGGGCGCGGGAGGCAAC
CAGGCCAAGAGCCAGTCTCAGCCGTCTCAGGGTTCTCAAGGTCAGGCTCAGGGTCCTCAGGGTCA
GCCCCAGGGTCAGTCTCAGGGCCAGCCTCAGGGCCATGCGGTGGCCAGCCCGGCAGCAGCCTCGC
CCACTCCCACGGGCGGTGCTCAGTACAACACGCCCGAGGAGCGCGCGGCCTACATCAAGGCCCAG
GCCGCCAAGCGGATGCAGGAGCGGTTGGCGGCGTTGGGGATCAAGGGCAAGCTGGCGGACACCGG
GTCGTCGTTGGCGTCTCCGGTGCAGCAGCCCGCTCTGCCGAAGCCAGCGGCCCCGCCGGCTCCTC
CCAAGCCCAGAGCCCAAGCTCAGGCCCACCAGGGCCAGGCTCAGGCTCAACAAGGCCAGGCTCAA
CAGGGCCAGGCTCAGACTCAACCACAGGCTCATTCTCAGCCTCAG


Right flanking sequence: Indices 125533 -- 126032
CGACGACTCTTCTGAGGACGACGACCCGGAGTACGAGGCGCTCCTCCAGCAAAAGAAGGCGTTGG
AGGCCAAGGAGCGCGAGCGTGAGCAGCGCCGCCGCGAGCGCGAGGAGCGCAAGGCCAAGCTCAAG
CAGGAGATGGCCGCGTACGAGTCGAAGCCCAACGACGACGACGACGACGAGCCGGTGATGGCTGC
GCCCACGTACCTGGCGAAGCTGGCCAAGAAGGACGAGCCCAAGAACCAGCCCAGCCAGTCCGCGG
CCAACAACCAGCCCGAAGCCACCAACGCGGACAATGCCACCAACGCGGACAATGCCACCAACCAG
GCCCAGGCCACCAACCAGGAACCCAAGGCCGAGCCCGAGCAGCCCAAGGAACAGCCCCAGCCCGA
ACGCAAGCACTTCAACCCGTTTGCCAAGATGGCCACGGGCCAGCCCCAGGCGCTGCCCGTCCAGG
CTCCCGCCAAGCAGTTCTTCTCGCTGGAGCCCAAGCCCGCGCCCG



Found at i:125520 original size:12 final size:12

Alignment explanation


    Indices: 125465--125505  Score: 73
    Period size: 12  Copynumber: 3.4  Consensus size: 12

     125455 TCAGCCTCAG

                     *  
     125465 CAGTCCCAGCCT
          1 CAGTCCCAGTCT

                        
     125477 CAGTCCCAGTCT
          1 CAGTCCCAGTCT

                        
     125489 CAGTCCCAGTCT
          1 CAGTCCCAGTCT

                 
     125501 CAGTC
          1 CAGTC

     125506 TCAGCCCCAG


Statistics
Matches: 28,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  12   28  1.00

ACGTcount: A:0.17, C:0.44, G:0.17, T:0.22


Consensus pattern (12 bp):   
CAGTCCCAGTCT

Left flanking sequence: Indices 124965 -- 125464
GGGTATCTGATCTGGTGAAGCAGTTTGTGAACGAGTTGAAGCAGTTCCAGGGCGCGGGAGGCAAC
CAGGCCAAGAGCCAGTCTCAGCCGTCTCAGGGTTCTCAAGGTCAGGCTCAGGGTCCTCAGGGTCA
GCCCCAGGGTCAGTCTCAGGGCCAGCCTCAGGGCCATGCGGTGGCCAGCCCGGCAGCAGCCTCGC
CCACTCCCACGGGCGGTGCTCAGTACAACACGCCCGAGGAGCGCGCGGCCTACATCAAGGCCCAG
GCCGCCAAGCGGATGCAGGAGCGGTTGGCGGCGTTGGGGATCAAGGGCAAGCTGGCGGACACCGG
GTCGTCGTTGGCGTCTCCGGTGCAGCAGCCCGCTCTGCCGAAGCCAGCGGCCCCGCCGGCTCCTC
CCAAGCCCAGAGCCCAAGCTCAGGCCCACCAGGGCCAGGCTCAGGCTCAACAAGGCCAGGCTCAA
CAGGGCCAGGCTCAGACTCAACCACAGGCTCATTCTCAGCCTCAG


Right flanking sequence: Indices 125506 -- 126005
TCAGCCCCAGTCTCAATCCCAGGCTCACGACGACTCTTCTGAGGACGACGACCCGGAGTACGAGG
CGCTCCTCCAGCAAAAGAAGGCGTTGGAGGCCAAGGAGCGCGAGCGTGAGCAGCGCCGCCGCGAG
CGCGAGGAGCGCAAGGCCAAGCTCAAGCAGGAGATGGCCGCGTACGAGTCGAAGCCCAACGACGA
CGACGACGACGAGCCGGTGATGGCTGCGCCCACGTACCTGGCGAAGCTGGCCAAGAAGGACGAGC
CCAAGAACCAGCCCAGCCAGTCCGCGGCCAACAACCAGCCCGAAGCCACCAACGCGGACAATGCC
ACCAACGCGGACAATGCCACCAACCAGGCCCAGGCCACCAACCAGGAACCCAAGGCCGAGCCCGA
GCAGCCCAAGGAACAGCCCCAGCCCGAACGCAAGCACTTCAACCCGTTTGCCAAGATGGCCACGG
GCCAGCCCCAGGCGCTGCCCGTCCAGGCTCCCGCCAAGCAGTTCT



Found at i:125831 original size:18 final size:18

Alignment explanation


    Indices: 125810--125854  Score: 90
    Period size: 18  Copynumber: 2.5  Consensus size: 18

     125800 CCAGCCCGAA

                              
     125810 GCCACCAACGCGGACAAT
          1 GCCACCAACGCGGACAAT

                              
     125828 GCCACCAACGCGGACAAT
          1 GCCACCAACGCGGACAAT

                     
     125846 GCCACCAAC
          1 GCCACCAAC

     125855 CAGGCCCAGG


Statistics
Matches: 27,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  18   27  1.00

ACGTcount: A:0.33, C:0.42, G:0.20, T:0.04


Consensus pattern (18 bp):   
GCCACCAACGCGGACAAT

Left flanking sequence: Indices 125310 -- 125809
TGCAGCAGCCCGCTCTGCCGAAGCCAGCGGCCCCGCCGGCTCCTCCCAAGCCCAGAGCCCAAGCT
CAGGCCCACCAGGGCCAGGCTCAGGCTCAACAAGGCCAGGCTCAACAGGGCCAGGCTCAGACTCA
ACCACAGGCTCATTCTCAGCCTCAGCAGTCCCAGCCTCAGTCCCAGTCTCAGTCCCAGTCTCAGT
CTCAGCCCCAGTCTCAATCCCAGGCTCACGACGACTCTTCTGAGGACGACGACCCGGAGTACGAG
GCGCTCCTCCAGCAAAAGAAGGCGTTGGAGGCCAAGGAGCGCGAGCGTGAGCAGCGCCGCCGCGA
GCGCGAGGAGCGCAAGGCCAAGCTCAAGCAGGAGATGGCCGCGTACGAGTCGAAGCCCAACGACG
ACGACGACGACGAGCCGGTGATGGCTGCGCCCACGTACCTGGCGAAGCTGGCCAAGAAGGACGAG
CCCAAGAACCAGCCCAGCCAGTCCGCGGCCAACAACCAGCCCGAA


Right flanking sequence: Indices 125855 -- 126354
CAGGCCCAGGCCACCAACCAGGAACCCAAGGCCGAGCCCGAGCAGCCCAAGGAACAGCCCCAGCC
CGAACGCAAGCACTTCAACCCGTTTGCCAAGATGGCCACGGGCCAGCCCCAGGCGCTGCCCGTCC
AGGCTCCCGCCAAGCAGTTCTTCTCGCTGGAGCCCAAGCCCGCGCCCGCGTTCGACCACGCCAAG
GCGAAGCAGCAGCGCGACTCGCAGCGCGGCCTCGCCACCAACGACGACTGGTCCGACGACGACAA
CGACGACTCCGACGACGACGTGCCCAACCGCCAGGGCGCGCTGCAGTTGGCGCTGTTGTTGTTTG
GCGGCATGTCCCAGCCGCCCACCCGCTCGGGCACCGACGAGTTGCCCAAGGTGAATGCCCAGGCC
GCCCAGCCTCAGCCTCAGCCTCAGCCTCAGGCTCAGGCCCAGTCTCAGGTCCCGGAGACGGAGGA
CGAGATCCTCGACTCGTTTGCCAACAAGGACGCGGCTCCCGCGCA



Found at i:126282 original size:6 final size:6

Alignment explanation


    Indices: 126248--126280  Score: 57
    Period size: 6  Copynumber: 5.5  Consensus size: 6

     126238 CCAGGCCGCC

                                           *      
     126248 CAGCCT CAGCCT CAGCCT CAGCCT CAGGCT CAG
          1 CAGCCT CAGCCT CAGCCT CAGCCT CAGCCT CAG

     126281 GCCCAGTCTC


Statistics
Matches: 26,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
   6   26  1.00

ACGTcount: A:0.18, C:0.45, G:0.21, T:0.15


Consensus pattern (6 bp):   
CAGCCT

Left flanking sequence: Indices 125748 -- 126247
TGGCCAAGAAGGACGAGCCCAAGAACCAGCCCAGCCAGTCCGCGGCCAACAACCAGCCCGAAGCC
ACCAACGCGGACAATGCCACCAACGCGGACAATGCCACCAACCAGGCCCAGGCCACCAACCAGGA
ACCCAAGGCCGAGCCCGAGCAGCCCAAGGAACAGCCCCAGCCCGAACGCAAGCACTTCAACCCGT
TTGCCAAGATGGCCACGGGCCAGCCCCAGGCGCTGCCCGTCCAGGCTCCCGCCAAGCAGTTCTTC
TCGCTGGAGCCCAAGCCCGCGCCCGCGTTCGACCACGCCAAGGCGAAGCAGCAGCGCGACTCGCA
GCGCGGCCTCGCCACCAACGACGACTGGTCCGACGACGACAACGACGACTCCGACGACGACGTGC
CCAACCGCCAGGGCGCGCTGCAGTTGGCGCTGTTGTTGTTTGGCGGCATGTCCCAGCCGCCCACC
CGCTCGGGCACCGACGAGTTGCCCAAGGTGAATGCCCAGGCCGCC


Right flanking sequence: Indices 126281 -- 126780
GCCCAGTCTCAGGTCCCGGAGACGGAGGACGAGATCCTCGACTCGTTTGCCAACAAGGACGCGGC
TCCCGCGCACCAGGTGGCCGTGCCAGCGACCGAGGCGCCCGAGGCGGTGTCTCAGCCGCCGCCCG
TGCCTCAGGAGATGCCGCCCGTGCCCACCACCGCTCCGCCGGCGCCTGAGTTCGATGCTCCACCG
GTGCCTGGGTTTGATGCTCCGCCCGTGCCTTCCCAGGCGCCTCCTCCGCCGCTGGAGGTTCCTCC
TGTGCCCACGGGACCGCCTGTTCCCCAGGCAGTGCCCTCAGAGGTGCCTGACTCGCCCGGTGACG
ACAAGTGGGGCGCGCTGGACTCGGACGACGACTTGTACACGACCCCGCCGCCGCCGCCGTCGTCG
CTGGTGCCTCCCGTGCCCACCGAGGCCATCCCACCGGTGCCGATGACGGATGCACCGCCGCCTCC
GCCTATGCCGTCGTTCGGGGCCCCGCAAGCTCCGCCGCCGCCGCT



Found at i:126291 original size:18 final size:17

Alignment explanation


    Indices: 126245--126293  Score: 62
    Period size: 18  Copynumber: 2.8  Consensus size: 17

     126235 TGCCCAGGCC

                        *    
     126245 GCCCAGCCTCAGCCTCA
          1 GCCCAGCCTCAGGCTCA

                              
     126262 GCCTCAGCCTCAGGCTCA
          1 GCC-CAGCCTCAGGCTCA

                   *      
     126280 GGCCCAGTCTCAGG
          1 -GCCCAGCCTCAGG

     126294 TCCCGGAGAC


Statistics
Matches: 28,  Mismatches: 2, Indels: 3
        0.85            0.06        0.09

Matches are distributed among these distances:
  17    3  0.11
  18   22  0.79
  19    3  0.11

ACGTcount: A:0.16, C:0.45, G:0.24, T:0.14


Consensus pattern (17 bp):   
GCCCAGCCTCAGGCTCA

Left flanking sequence: Indices 125745 -- 126244
AGCTGGCCAAGAAGGACGAGCCCAAGAACCAGCCCAGCCAGTCCGCGGCCAACAACCAGCCCGAA
GCCACCAACGCGGACAATGCCACCAACGCGGACAATGCCACCAACCAGGCCCAGGCCACCAACCA
GGAACCCAAGGCCGAGCCCGAGCAGCCCAAGGAACAGCCCCAGCCCGAACGCAAGCACTTCAACC
CGTTTGCCAAGATGGCCACGGGCCAGCCCCAGGCGCTGCCCGTCCAGGCTCCCGCCAAGCAGTTC
TTCTCGCTGGAGCCCAAGCCCGCGCCCGCGTTCGACCACGCCAAGGCGAAGCAGCAGCGCGACTC
GCAGCGCGGCCTCGCCACCAACGACGACTGGTCCGACGACGACAACGACGACTCCGACGACGACG
TGCCCAACCGCCAGGGCGCGCTGCAGTTGGCGCTGTTGTTGTTTGGCGGCATGTCCCAGCCGCCC
ACCCGCTCGGGCACCGACGAGTTGCCCAAGGTGAATGCCCAGGCC


Right flanking sequence: Indices 126294 -- 126793
TCCCGGAGACGGAGGACGAGATCCTCGACTCGTTTGCCAACAAGGACGCGGCTCCCGCGCACCAG
GTGGCCGTGCCAGCGACCGAGGCGCCCGAGGCGGTGTCTCAGCCGCCGCCCGTGCCTCAGGAGAT
GCCGCCCGTGCCCACCACCGCTCCGCCGGCGCCTGAGTTCGATGCTCCACCGGTGCCTGGGTTTG
ATGCTCCGCCCGTGCCTTCCCAGGCGCCTCCTCCGCCGCTGGAGGTTCCTCCTGTGCCCACGGGA
CCGCCTGTTCCCCAGGCAGTGCCCTCAGAGGTGCCTGACTCGCCCGGTGACGACAAGTGGGGCGC
GCTGGACTCGGACGACGACTTGTACACGACCCCGCCGCCGCCGCCGTCGTCGCTGGTGCCTCCCG
TGCCCACCGAGGCCATCCCACCGGTGCCGATGACGGATGCACCGCCGCCTCCGCCTATGCCGTCG
TTCGGGGCCCCGCAAGCTCCGCCGCCGCCGCTGGGTGTGCCGCCG



Found at i:126503 original size:24 final size:24

Alignment explanation


    Indices: 126443--126505  Score: 81
    Period size: 24  Copynumber: 2.6  Consensus size: 24

     126433 GCCCACCACC

                      *             
     126443 GCTCCGCCGGCGCCTGAGTTCGAT
          1 GCTCCGCCGGTGCCTGAGTTCGAT

                 *          *   *   
     126467 GCTCCACCGGTGCCTGGGTTTGAT
          1 GCTCCGCCGGTGCCTGAGTTCGAT

                    *      
     126491 GCTCCGCCCGTGCCT
          1 GCTCCGCCGGTGCCT

     126506 TCCCAGGCGC


Statistics
Matches: 33,  Mismatches: 6, Indels: 0
        0.85            0.15        0.00

Matches are distributed among these distances:
  24   33  1.00

ACGTcount: A:0.06, C:0.38, G:0.32, T:0.24


Consensus pattern (24 bp):   
GCTCCGCCGGTGCCTGAGTTCGAT

Left flanking sequence: Indices 125943 -- 126442
TTGCCAAGATGGCCACGGGCCAGCCCCAGGCGCTGCCCGTCCAGGCTCCCGCCAAGCAGTTCTTC
TCGCTGGAGCCCAAGCCCGCGCCCGCGTTCGACCACGCCAAGGCGAAGCAGCAGCGCGACTCGCA
GCGCGGCCTCGCCACCAACGACGACTGGTCCGACGACGACAACGACGACTCCGACGACGACGTGC
CCAACCGCCAGGGCGCGCTGCAGTTGGCGCTGTTGTTGTTTGGCGGCATGTCCCAGCCGCCCACC
CGCTCGGGCACCGACGAGTTGCCCAAGGTGAATGCCCAGGCCGCCCAGCCTCAGCCTCAGCCTCA
GCCTCAGGCTCAGGCCCAGTCTCAGGTCCCGGAGACGGAGGACGAGATCCTCGACTCGTTTGCCA
ACAAGGACGCGGCTCCCGCGCACCAGGTGGCCGTGCCAGCGACCGAGGCGCCCGAGGCGGTGTCT
CAGCCGCCGCCCGTGCCTCAGGAGATGCCGCCCGTGCCCACCACC


Right flanking sequence: Indices 126506 -- 127005
TCCCAGGCGCCTCCTCCGCCGCTGGAGGTTCCTCCTGTGCCCACGGGACCGCCTGTTCCCCAGGC
AGTGCCCTCAGAGGTGCCTGACTCGCCCGGTGACGACAAGTGGGGCGCGCTGGACTCGGACGACG
ACTTGTACACGACCCCGCCGCCGCCGCCGTCGTCGCTGGTGCCTCCCGTGCCCACCGAGGCCATC
CCACCGGTGCCGATGACGGATGCACCGCCGCCTCCGCCTATGCCGTCGTTCGGGGCCCCGCAAGC
TCCGCCGCCGCCGCTGGGTGTGCCGCCGCCGCCGCCGCCTCCGGCAATGGGGATTCCTCCGCCGC
CTCCGATGGGCGGGGTGCCACCGCCGCCTCCGATGGGTGGCATTCCGCCGCCTCCGCCCATGGGT
GGCGGGGCTCCTGCTCCCAGACCCGCGGGGGACATCTCCGCGTTGTTGGGACTGATCCAGCAGGG
CAAGTCGTTGAAGAAGGTGGACCCGAGCCAGCAGAAGATCAAGGA



Found at i:126881 original size:27 final size:27

Alignment explanation


    Indices: 126794--126898  Score: 81
    Period size: 27  Copynumber: 3.9  Consensus size: 27

     126784 TGTGCCGCCG

                                          
     126794 CCGCCGCCGCCTCCGGCAAT-GG-GG-ATT
          1 CCGCCGCCGCCTCC-G--ATGGGTGGCATT

              *                 *  ** *
     126821 CCTCCGCCGCCTCCGATGGGCGGGGTG
          1 CCGCCGCCGCCTCCGATGGGTGGCATT

              *                        
     126848 CCACCGCCGCCTCCGATGGGTGGCATT
          1 CCGCCGCCGCCTCCGATGGGTGGCATT

                    *  *  *         
     126875 CCGCCGCCTCCGCCCATGGGTGGC
          1 CCGCCGCCGCCTCCGATGGGTGGC

     126899 GGGGCTCCTG


Statistics
Matches: 63,  Mismatches: 12, Indels: 6
        0.78            0.15        0.07

Matches are distributed among these distances:
  24    2  0.03
  25    2  0.03
  26    3  0.05
  27   56  0.89

ACGTcount: A:0.08, C:0.43, G:0.34, T:0.15


Consensus pattern (27 bp):   
CCGCCGCCGCCTCCGATGGGTGGCATT

Left flanking sequence: Indices 126294 -- 126793
TCCCGGAGACGGAGGACGAGATCCTCGACTCGTTTGCCAACAAGGACGCGGCTCCCGCGCACCAG
GTGGCCGTGCCAGCGACCGAGGCGCCCGAGGCGGTGTCTCAGCCGCCGCCCGTGCCTCAGGAGAT
GCCGCCCGTGCCCACCACCGCTCCGCCGGCGCCTGAGTTCGATGCTCCACCGGTGCCTGGGTTTG
ATGCTCCGCCCGTGCCTTCCCAGGCGCCTCCTCCGCCGCTGGAGGTTCCTCCTGTGCCCACGGGA
CCGCCTGTTCCCCAGGCAGTGCCCTCAGAGGTGCCTGACTCGCCCGGTGACGACAAGTGGGGCGC
GCTGGACTCGGACGACGACTTGTACACGACCCCGCCGCCGCCGCCGTCGTCGCTGGTGCCTCCCG
TGCCCACCGAGGCCATCCCACCGGTGCCGATGACGGATGCACCGCCGCCTCCGCCTATGCCGTCG
TTCGGGGCCCCGCAAGCTCCGCCGCCGCCGCTGGGTGTGCCGCCG


Right flanking sequence: Indices 126899 -- 127398
GGGGCTCCTGCTCCCAGACCCGCGGGGGACATCTCCGCGTTGTTGGGACTGATCCAGCAGGGCAA
GTCGTTGAAGAAGGTGGACCCGAGCCAGCAGAAGATCAAGGACGGGGCTACTGTGGGCCGGGTGA
TCTAGAGTTATAGAACCAGTGAATAAAATTTGTATCGCATGGTAGGACGGGTGGTGGTGTTGTGC
CTGTTGCTTGGGGTCAAGTGAAAGGGTAGTTCTCTAAAATTGGTCTATGATAATCTTTACACACC
TTTTATTGCTATGATATACCTATGGAATTGGCGCGGGGATTGGCGGGTAATCTTAGACCGGCTGT
TTACAATCCGGGGTCACTGGTGGCGTGGCATTTGCCAGCTTGAGAAGAACCTTTGTTGGTGAGAC
AGTTTAAATTTTTTGAGAACCCTTGTTCACAGCTTGAGCGATAGTCTCGTTCAAAACTTGATCTC
GTTGACAGCTTGATCACTCTCGTCAATAGCTTGATCAAGACTCTC



Found at i:133294 original size:42 final size:41

Alignment explanation


    Indices: 133201--133294  Score: 118
    Period size: 42  Copynumber: 2.2  Consensus size: 41

     133191 GCCTCCGGGG

                                  *                  
     133201 GGCTTTTTGGCAACAAGGACGCCGCCAAGCCCGCTGCTGGC
          1 GGCTTTTTGGCAACAAGGACGCAGCCAAGCCCGCTGCTGGC

                 *                           *        *
     133242 GGTCTCTTTGGCAACAAGGACG-AGTCCAAGCCTGCTGCTGGT
          1 GG-CTTTTTGGCAACAAGGACGCAG-CCAAGCCCGCTGCTGGC

                       
     133284 GGCTTGTTTGG
          1 GGCTT-TTTGG

     133295 AGCTAAGAAG


Statistics
Matches: 45,  Mismatches: 5, Indels: 5
        0.82            0.09        0.09

Matches are distributed among these distances:
  41    5  0.11
  42   40  0.89

ACGTcount: A:0.16, C:0.28, G:0.33, T:0.23


Consensus pattern (41 bp):   
GGCTTTTTGGCAACAAGGACGCAGCCAAGCCCGCTGCTGGC

Left flanking sequence: Indices 132701 -- 133200
CCCCCAGCCTCTGGGGAGCTTGTTTGGTGGCTCGCAGGGATCCACTCCGTCAGGCACCCCGGCGT
TTGGCTCCAAGGCCAACTCGCCTGCTCCCTCGGGTGGTTTGTTTGGCGCCAAGCCCGCTGATAAG
CCCGCTGGCACCCCGTTGTTTGGGGCGAAGCCCGACAGTAAGCTGGCGAGCCCGGCTCCGGGTCT
TTTCGGGGCCAAGAAGGACGATGCTGGTGCTGCTGGCGCGTCGGGTTTTTCCTTTGGTAACAAGG
ACGCCCTGAAACCCGCTGCTGGAGGTCTCTTTGGGGCCAAGGCCGACGACAAACCGGCCTCGGGT
GGTTTGTTTGGGGCTAAGCCCGCGGAGAACCAGGCCGCGGCTCCTTCGGGGGGCATGTTTGGCGC
CAAGACGGACGACAAGCCTGCTGGAGGGTTGTTTGGTGCCAAAAAAGACGAGTCTGCGTCGTCGG
GACCGCTTTTTGGAGCGAAAAAGGACGACAAACCGGCCTCCGGGG


Right flanking sequence: Indices 133295 -- 133794
AGCTAAGAAGGACGGCGAGAAGAAGGACGCCCCCTCGGGTGGTTTGTTTGGGGCCAAGAAGGACG
ACGACAAAAAGGAAGCCCCCTCGGGCGGGTTGTTTGGGGCCAAGAAAGACGAGAAAAAGGACGCT
CCCGCTGGTGGTTTGTTTGGAGCGAAGAAAGACGACGACAAGAAGGACGCTCCCGCCGGAGGCTT
ATTCGGAGCCAAAAAGGACGACGAAAAGAAGGACGCCCCGGCAGCCGGAGGGTTGTTTGGCGCCA
AGAAGGACGACAAGCCGGAAACCACGTTCGGCACCGCCGAAAAGAAGGACGCCACCGACATCAAC
TTGAAGCCCACCACCATCCAGCCCATGGAGGTGCTGATCGACAACAAAACCATCGACGACTTGAT
CACCAAGTGGCTGAAGCAGTTGACGGCCACCCTGAAGATCTTTGACACATACACCACCAAGGTGA
AGGACTGGGACCAGCAGTTGATCAAGCTGGGCGACGAGATTGTCG



Found at i:133357 original size:51 final size:51

Alignment explanation


    Indices: 133281--133565  Score: 261
    Period size: 51  Copynumber: 5.6  Consensus size: 51

     133271 GCCTGCTGCT

                             *          *   *               *  
     133281 GGTGGCTTGTTTGGAGCTAAGAAGGACGGCGAGAAGAAGGACGCCCCCTCG
          1 GGTGGCTTGTTTGGAGCCAAGAAGGACGACGACAAGAAGGACGCCCCCGCG

                 *        *                    *     *      *  
     133332 GGTGGTTTGTTTGGGGCCAAGAAGGACGACGACAAAAAGGAAGCCCCCTCG
          1 GGTGGCTTGTTTGGAGCCAAGAAGGACGACGACAAGAAGGACGCCCCCGCG

              *  *        *        *                    *     *
     133383 GGCGGGTTGTTTGGGGCCAAGAAAGACGA-GA-AA-AAGGACGCTCCCGCT
          1 GGTGGCTTGTTTGGAGCCAAGAAGGACGACGACAAGAAGGACGCCCCCGCG

                 *           *     *                    *     *
     133431 GGTGGTTTGTTTGGAGCGAAGAAAGACGACGACAAGAAGGACGCTCCCGCC
          1 GGTGGCTTGTTTGGAGCCAAGAAGGACGACGACAAGAAGGACGCCCCCGCG

              *     *  *        *           *                    *
     133482 GGAGGCTTATTCGGAGCCAAAAAGGACGACGAAAAGAAGGACGCCCCGGCAGCC
          1 GGTGGCTTGTTTGGAGCCAAGAAGGACGACGACAAGAAGGACGCCCC--C-GCG

              *  *        *               
     133536 GGAGGGTTGTTTGGCGCCAAGAAGGACGAC
          1 GGTGGCTTGTTTGGAGCCAAGAAGGACGAC

     133566 AAGCCGGAAA


Statistics
Matches: 195,  Mismatches: 33, Indels: 9
        0.82            0.14        0.04

Matches are distributed among these distances:
  48   36  0.18
  49    4  0.02
  50    4  0.02
  51  122  0.63
  53    1  0.01
  54   28  0.14

ACGTcount: A:0.27, C:0.22, G:0.37, T:0.14


Consensus pattern (51 bp):   
GGTGGCTTGTTTGGAGCCAAGAAGGACGACGACAAGAAGGACGCCCCCGCG

Left flanking sequence: Indices 132781 -- 133280
ACTCGCCTGCTCCCTCGGGTGGTTTGTTTGGCGCCAAGCCCGCTGATAAGCCCGCTGGCACCCCG
TTGTTTGGGGCGAAGCCCGACAGTAAGCTGGCGAGCCCGGCTCCGGGTCTTTTCGGGGCCAAGAA
GGACGATGCTGGTGCTGCTGGCGCGTCGGGTTTTTCCTTTGGTAACAAGGACGCCCTGAAACCCG
CTGCTGGAGGTCTCTTTGGGGCCAAGGCCGACGACAAACCGGCCTCGGGTGGTTTGTTTGGGGCT
AAGCCCGCGGAGAACCAGGCCGCGGCTCCTTCGGGGGGCATGTTTGGCGCCAAGACGGACGACAA
GCCTGCTGGAGGGTTGTTTGGTGCCAAAAAAGACGAGTCTGCGTCGTCGGGACCGCTTTTTGGAG
CGAAAAAGGACGACAAACCGGCCTCCGGGGGGCTTTTTGGCAACAAGGACGCCGCCAAGCCCGCT
GCTGGCGGTCTCTTTGGCAACAAGGACGAGTCCAAGCCTGCTGCT


Right flanking sequence: Indices 133566 -- 134065
AAGCCGGAAACCACGTTCGGCACCGCCGAAAAGAAGGACGCCACCGACATCAACTTGAAGCCCAC
CACCATCCAGCCCATGGAGGTGCTGATCGACAACAAAACCATCGACGACTTGATCACCAAGTGGC
TGAAGCAGTTGACGGCCACCCTGAAGATCTTTGACACATACACCACCAAGGTGAAGGACTGGGAC
CAGCAGTTGATCAAGCTGGGCGACGAGATTGTCGCGCTCGACCAGGACGCCCACGAGGCGGAGCA
GTTGCAAACCAAGATCGACCAGCAGCTCAAGTTTGTCGAGCTGCAACAGGACGAGTTGGACAAAT
TGTTGGACAACTACGAGCAGCAGGCTGACACGCTTTTGAGCACGGTGGAGCTCAACGCCCAGGGC
GACGGGGTGGCCGACCCCAGCAACCAGTTGCTGAGCACCGACAAGTTGCGGCAGAAGGCCTACCA
CAACGCCGAGGTGTTGGACGAGCGCTTGGACCTGTTGGGCAAGCT



Found at i:133471 original size:150 final size:152

Alignment explanation


    Indices: 133278--133564  Score: 355
    Period size: 150  Copynumber: 1.9  Consensus size: 152

     133268 CAAGCCTGCT

                                *     *    *   *               * *  *  *  *  
     133278 GCTGGTGGCTTGTTTGGAGCTAAGAAGGACGGCGAGAAGAAGGACGCCCCCTCGGGTGGTTTGTT
          1 GCTGGTGGCTTGTTTGGAGCGAAGAAAGACGACGACAAGAAGGACGCCCCCGCCGGAGGCTTATT

            *  *     *                              * *  *           *       
     133343 TGGGGCCAAGAAGGACGACGACAAA-AAGGAAGCCCC-C-TCGGGCGGGTTGTTTGGGGCCAAGA
         66 CGGAGCCAAAAAGGACGACGA-AAAGAAGGAAGCCCCGCAGCCGGAGGGTTGTTTGGCGCCAAGA

                                   
     133405 AAGACGAGAAAAAGGACGCTCCC
        130 AAGACGAGAAAAAGGACGCTCCC

                    *                                      *                 
     133428 GCTGGTGGTTTGTTTGGAGCGAAGAAAGACGACGACAAGAAGGACGCTCCCGCCGGAGGCTTATT
          1 GCTGGTGGCTTGTTTGGAGCGAAGAAAGACGACGACAAGAAGGACGCCCCCGCCGGAGGCTTATT

                                          *                                  
     133493 CGGAGCCAAAAAGGACGACGAAAAGAAGGACGCCCCGGCAGCCGGAGGGTTGTTTGGCGCCAAGA
         66 CGGAGCCAAAAAGGACGACGAAAAGAAGGAAGCCCC-GCAGCCGGAGGGTTGTTTGGCGCCAAGA

             *     
     133558 AGGACGA
        130 AAGACGA

     133565 CAAGCCGGAA


Statistics
Matches: 113,  Mismatches: 20, Indels: 5
        0.82            0.14        0.04

Matches are distributed among these distances:
 149    3  0.03
 150   82  0.73
 152    1  0.01
 153   27  0.24

ACGTcount: A:0.27, C:0.22, G:0.37, T:0.14


Consensus pattern (152 bp):   
GCTGGTGGCTTGTTTGGAGCGAAGAAAGACGACGACAAGAAGGACGCCCCCGCCGGAGGCTTATT
CGGAGCCAAAAAGGACGACGAAAAGAAGGAAGCCCCGCAGCCGGAGGGTTGTTTGGCGCCAAGAA
AGACGAGAAAAAGGACGCTCCC

Left flanking sequence: Indices 132778 -- 133277
CCAACTCGCCTGCTCCCTCGGGTGGTTTGTTTGGCGCCAAGCCCGCTGATAAGCCCGCTGGCACC
CCGTTGTTTGGGGCGAAGCCCGACAGTAAGCTGGCGAGCCCGGCTCCGGGTCTTTTCGGGGCCAA
GAAGGACGATGCTGGTGCTGCTGGCGCGTCGGGTTTTTCCTTTGGTAACAAGGACGCCCTGAAAC
CCGCTGCTGGAGGTCTCTTTGGGGCCAAGGCCGACGACAAACCGGCCTCGGGTGGTTTGTTTGGG
GCTAAGCCCGCGGAGAACCAGGCCGCGGCTCCTTCGGGGGGCATGTTTGGCGCCAAGACGGACGA
CAAGCCTGCTGGAGGGTTGTTTGGTGCCAAAAAAGACGAGTCTGCGTCGTCGGGACCGCTTTTTG
GAGCGAAAAAGGACGACAAACCGGCCTCCGGGGGGCTTTTTGGCAACAAGGACGCCGCCAAGCCC
GCTGCTGGCGGTCTCTTTGGCAACAAGGACGAGTCCAAGCCTGCT


Right flanking sequence: Indices 133565 -- 134064
CAAGCCGGAAACCACGTTCGGCACCGCCGAAAAGAAGGACGCCACCGACATCAACTTGAAGCCCA
CCACCATCCAGCCCATGGAGGTGCTGATCGACAACAAAACCATCGACGACTTGATCACCAAGTGG
CTGAAGCAGTTGACGGCCACCCTGAAGATCTTTGACACATACACCACCAAGGTGAAGGACTGGGA
CCAGCAGTTGATCAAGCTGGGCGACGAGATTGTCGCGCTCGACCAGGACGCCCACGAGGCGGAGC
AGTTGCAAACCAAGATCGACCAGCAGCTCAAGTTTGTCGAGCTGCAACAGGACGAGTTGGACAAA
TTGTTGGACAACTACGAGCAGCAGGCTGACACGCTTTTGAGCACGGTGGAGCTCAACGCCCAGGG
CGACGGGGTGGCCGACCCCAGCAACCAGTTGCTGAGCACCGACAAGTTGCGGCAGAAGGCCTACC
ACAACGCCGAGGTGTTGGACGAGCGCTTGGACCTGTTGGGCAAGC



Found at i:133501 original size:99 final size:98

Alignment explanation


    Indices: 133310--133565  Score: 235
    Period size: 99  Copynumber: 2.5  Consensus size: 98

     133300 AGAAGGACGG

                  *            *                *        *                   
     133310 CGAGAAGAAGGACGCCCCCTCGGGTGGTTTGTTTGGGGCCAAGAAGGACGACGACAAAAAGGAAG
          1 CGAGAAAAAGGACG-CCCCGCGGGTGGTTTGTTTGGAGCCAAGAAAGACGACGACAAAAAGGAAG

                 * *  *  *  *  *  *            
     133375 CCCCCTCGGGCGGGTTGTTTGGGGCCAAGAAA-GA
         65 CCCCCGCCGGAGGCTTATTCGGAGCCAA-AAAGGA

                                 *                 *                 *     * 
     133409 CGAGAAAAAGGACGCTCCCGCTGGTGGTTTGTTTGGAGCGAAGAAAGACGACGACAAGAAGGACG
          1 CGAGAAAAAGGACGC-CCCGCGGGTGGTTTGTTTGGAGCCAAGAAAGACGACGACAAAAAGGAAG

             *                                
     133474 CTCCCGCCGGAGGCTTATTCGGAGCCAAAAAGGA
         65 CCCCCGCCGGAGGCTTATTCGGAGCCAAAAAGGA

                                          *  *        *        *      
     133508 CGACGAAAAGAAGGACGCCCCGGCAGCCGGAGGGTTGTTTGGCGCCAAGAAGGACGAC
          1 CGA-G-AAA-AAGGACGCCCC-GC-G--GGTGGTTTGTTTGGAGCCAAGAAAGACGAC

     133566 AAGCCGGAAA


Statistics
Matches: 126,  Mismatches: 22, Indels: 12
        0.79            0.14        0.08

Matches are distributed among these distances:
  98    4  0.03
  99   80  0.63
 100    1  0.01
 101    6  0.05
 102   10  0.08
 105   25  0.20

ACGTcount: A:0.28, C:0.23, G:0.36, T:0.13


Consensus pattern (98 bp):   
CGAGAAAAAGGACGCCCCGCGGGTGGTTTGTTTGGAGCCAAGAAAGACGACGACAAAAAGGAAGC
CCCCGCCGGAGGCTTATTCGGAGCCAAAAAGGA

Left flanking sequence: Indices 132810 -- 133309
GGCGCCAAGCCCGCTGATAAGCCCGCTGGCACCCCGTTGTTTGGGGCGAAGCCCGACAGTAAGCT
GGCGAGCCCGGCTCCGGGTCTTTTCGGGGCCAAGAAGGACGATGCTGGTGCTGCTGGCGCGTCGG
GTTTTTCCTTTGGTAACAAGGACGCCCTGAAACCCGCTGCTGGAGGTCTCTTTGGGGCCAAGGCC
GACGACAAACCGGCCTCGGGTGGTTTGTTTGGGGCTAAGCCCGCGGAGAACCAGGCCGCGGCTCC
TTCGGGGGGCATGTTTGGCGCCAAGACGGACGACAAGCCTGCTGGAGGGTTGTTTGGTGCCAAAA
AAGACGAGTCTGCGTCGTCGGGACCGCTTTTTGGAGCGAAAAAGGACGACAAACCGGCCTCCGGG
GGGCTTTTTGGCAACAAGGACGCCGCCAAGCCCGCTGCTGGCGGTCTCTTTGGCAACAAGGACGA
GTCCAAGCCTGCTGCTGGTGGCTTGTTTGGAGCTAAGAAGGACGG


Right flanking sequence: Indices 133566 -- 134065
AAGCCGGAAACCACGTTCGGCACCGCCGAAAAGAAGGACGCCACCGACATCAACTTGAAGCCCAC
CACCATCCAGCCCATGGAGGTGCTGATCGACAACAAAACCATCGACGACTTGATCACCAAGTGGC
TGAAGCAGTTGACGGCCACCCTGAAGATCTTTGACACATACACCACCAAGGTGAAGGACTGGGAC
CAGCAGTTGATCAAGCTGGGCGACGAGATTGTCGCGCTCGACCAGGACGCCCACGAGGCGGAGCA
GTTGCAAACCAAGATCGACCAGCAGCTCAAGTTTGTCGAGCTGCAACAGGACGAGTTGGACAAAT
TGTTGGACAACTACGAGCAGCAGGCTGACACGCTTTTGAGCACGGTGGAGCTCAACGCCCAGGGC
GACGGGGTGGCCGACCCCAGCAACCAGTTGCTGAGCACCGACAAGTTGCGGCAGAAGGCCTACCA
CAACGCCGAGGTGTTGGACGAGCGCTTGGACCTGTTGGGCAAGCT



Found at i:134345 original size:20 final size:20

Alignment explanation


    Indices: 134320--134469  Score: 140
    Period size: 20  Copynumber: 8.0  Consensus size: 20

     134310 GGAAGGTGTT

                                
     134320 GTGGTGGAGTAGAGGTGGTA
          1 GTGGTGGAGTAGAGGTGGTA

                                
     134340 GTGGTGGAGTAGAGGTGG-A
          1 GTGGTGGAGTAGAGGTGGTA

                              * 
     134359 GTGGTGGAGTAGAGGT-GAA
          1 GTGGTGGAGTAGAGGTGGTA

            *     *         *    
     134378 ATGGTGAAGTAAGAGGGGGTA
          1 GTGGTGGAGT-AGAGGTGGTA

                                
     134399 GTGGTGGAGTAGA----G--
          1 GTGGTGGAGTAGAGGTGGTA

                        *      *
     134413 GTGGTGGAGTAGGGGTGGTT
          1 GTGGTGGAGTAGAGGTGGTA

             *                  
     134433 GAGGT-G-GTAGAGGTGGTA
          1 GTGGTGGAGTAGAGGTGGTA

             *         *       
     134451 GAGGTGGAGTAAAGGTGGT
          1 GTGGTGGAGTAGAGGTGGT

     134470 GGAGTAGGTG


Statistics
Matches: 108,  Mismatches: 11, Indels: 22
        0.77            0.08        0.16

Matches are distributed among these distances:
  14   12  0.11
  16    1  0.01
  18   17  0.16
  19   28  0.26
  20   40  0.37
  21   10  0.09

ACGTcount: A:0.23, C:0.00, G:0.55, T:0.23


Consensus pattern (20 bp):   
GTGGTGGAGTAGAGGTGGTA

Left flanking sequence: Indices 133820 -- 134319
GGAGCAGTTGCAAACCAAGATCGACCAGCAGCTCAAGTTTGTCGAGCTGCAACAGGACGAGTTGG
ACAAATTGTTGGACAACTACGAGCAGCAGGCTGACACGCTTTTGAGCACGGTGGAGCTCAACGCC
CAGGGCGACGGGGTGGCCGACCCCAGCAACCAGTTGCTGAGCACCGACAAGTTGCGGCAGAAGGC
CTACCACAACGCCGAGGTGTTGGACGAGCGCTTGGACCTGTTGGGCAAGCTGTTGCTGAGTCTCG
TTGGCGAGGTCAACGGGGTGTCGGACGTGTTCAACAAGCTGTTGATCCTCGACTTTGCCAACGCC
ACCGGTGACGGCAAGGGCGCCAACCCGATCGAGGAGATCATCAAGTTGTTGAACCTACACTTGGA
GAACATGAAGTATATCGAGGGGGCCGAGAACACGCTCAAGGAGAAGCTCGCCCGGTTGCAGAAGC
AGTAGTTAATGAACGTATGAGAATTGGGAAGTGTTGGAAGGTGTT


Right flanking sequence: Indices 134470 -- 134969
GGAGTAGGTGGTAGTGATGGATCGTAAAGGCTACGATGGAAATTATAAATGGCGTTGCGACCTCC
TCTTAGTTATGAGCGTAGACAGTCGCTCCCGTGGGTATGAGCCAACAAACGCGCTCCTCGTACCA
CGCGACCCCCTATCCACCCGCTATCCGACACCGCGACGTGTGTCCGTTTTTATTTCCCGATTCGT
CCACAAACGCGGTACGAACCCCTGAAACTACTAAACATCGAGCGGTAACTAGTTGAACATCGGTC
GGCGGCTCTGCATTGACGTCTGTCGGATCGCCTGACATCATCTCCCCATTGACAGCATTTCCGGG
TTATTTCTACTATCTCGTGCTCTTTTGCTCAATTGCTGTAGGAACTAGGCACCAACAACTGCAAC
CGCAAACACAGTGCATTGCGTCCGACGGAGTTCCCCCGCCGCGGAGTTAACTAGCATTGTCGGGG
TGTTCTGCCGAGGCCGTGTACCCCATGTTTTTCATGTGGGTCGGG



Found at i:134351 original size:11 final size:11

Alignment explanation


    Indices: 134320--134430  Score: 53
    Period size: 11  Copynumber: 10.6  Consensus size: 11

     134310 GGAAGGTGTT

                       
     134320 GTGGTGGAGTA
          1 GTGGTGGAGTA

             *         
     134331 GAGGT-G-GTA
          1 GTGGTGGAGTA

                       
     134340 GTGGTGGAGTA
          1 GTGGTGGAGTA

             *         
     134351 GAGGT-G-G-A
          1 GTGGTGGAGTA

                       
     134359 GTGGTGGAGTA
          1 GTGGTGGAGTA

             *         
     134370 GAGGT-GA--A
          1 GTGGTGGAGTA

            *     *     
     134378 ATGGTGAAGTAA
          1 GTGGTGGAGT-A

             *         
     134390 GAGG-GG-GTA
          1 GTGGTGGAGTA

                         
     134399 GTGGTGGAGTAGA
          1 GTGGTGGAGT--A

                        
     134412 GGTGGTGGAGTA
          1 -GTGGTGGAGTA

             *     
     134424 GGGGTGG
          1 GTGGTGG

     134431 TTGAGGTGGT


Statistics
Matches: 73,  Mismatches: 13, Indels: 28
        0.64            0.11        0.25

Matches are distributed among these distances:
   8    9  0.12
   9   14  0.19
  10   10  0.14
  11   25  0.34
  12    4  0.05
  13    1  0.01
  14   10  0.14

ACGTcount: A:0.23, C:0.00, G:0.56, T:0.22


Consensus pattern (11 bp):   
GTGGTGGAGTA

Left flanking sequence: Indices 133820 -- 134319
GGAGCAGTTGCAAACCAAGATCGACCAGCAGCTCAAGTTTGTCGAGCTGCAACAGGACGAGTTGG
ACAAATTGTTGGACAACTACGAGCAGCAGGCTGACACGCTTTTGAGCACGGTGGAGCTCAACGCC
CAGGGCGACGGGGTGGCCGACCCCAGCAACCAGTTGCTGAGCACCGACAAGTTGCGGCAGAAGGC
CTACCACAACGCCGAGGTGTTGGACGAGCGCTTGGACCTGTTGGGCAAGCTGTTGCTGAGTCTCG
TTGGCGAGGTCAACGGGGTGTCGGACGTGTTCAACAAGCTGTTGATCCTCGACTTTGCCAACGCC
ACCGGTGACGGCAAGGGCGCCAACCCGATCGAGGAGATCATCAAGTTGTTGAACCTACACTTGGA
GAACATGAAGTATATCGAGGGGGCCGAGAACACGCTCAAGGAGAAGCTCGCCCGGTTGCAGAAGC
AGTAGTTAATGAACGTATGAGAATTGGGAAGTGTTGGAAGGTGTT


Right flanking sequence: Indices 134431 -- 134930
TTGAGGTGGTAGAGGTGGTAGAGGTGGAGTAAAGGTGGTGGAGTAGGTGGTAGTGATGGATCGTA
AAGGCTACGATGGAAATTATAAATGGCGTTGCGACCTCCTCTTAGTTATGAGCGTAGACAGTCGC
TCCCGTGGGTATGAGCCAACAAACGCGCTCCTCGTACCACGCGACCCCCTATCCACCCGCTATCC
GACACCGCGACGTGTGTCCGTTTTTATTTCCCGATTCGTCCACAAACGCGGTACGAACCCCTGAA
ACTACTAAACATCGAGCGGTAACTAGTTGAACATCGGTCGGCGGCTCTGCATTGACGTCTGTCGG
ATCGCCTGACATCATCTCCCCATTGACAGCATTTCCGGGTTATTTCTACTATCTCGTGCTCTTTT
GCTCAATTGCTGTAGGAACTAGGCACCAACAACTGCAACCGCAAACACAGTGCATTGCGTCCGAC
GGAGTTCCCCCGCCGCGGAGTTAACTAGCATTGTCGGGGTGTTCT



Found at i:134418 original size:14 final size:14

Alignment explanation


    Indices: 134399--134431  Score: 57
    Period size: 14  Copynumber: 2.4  Consensus size: 14

     134389 AGAGGGGGTA

                          
     134399 GTGGTGGAGTAGAG
          1 GTGGTGGAGTAGAG

                        * 
     134413 GTGGTGGAGTAGGG
          1 GTGGTGGAGTAGAG

                 
     134427 GTGGT
          1 GTGGT

     134432 TGAGGTGGTA


Statistics
Matches: 18,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  14   18  1.00

ACGTcount: A:0.15, C:0.00, G:0.61, T:0.24


Consensus pattern (14 bp):   
GTGGTGGAGTAGAG

Left flanking sequence: Indices 133899 -- 134398
AACTACGAGCAGCAGGCTGACACGCTTTTGAGCACGGTGGAGCTCAACGCCCAGGGCGACGGGGT
GGCCGACCCCAGCAACCAGTTGCTGAGCACCGACAAGTTGCGGCAGAAGGCCTACCACAACGCCG
AGGTGTTGGACGAGCGCTTGGACCTGTTGGGCAAGCTGTTGCTGAGTCTCGTTGGCGAGGTCAAC
GGGGTGTCGGACGTGTTCAACAAGCTGTTGATCCTCGACTTTGCCAACGCCACCGGTGACGGCAA
GGGCGCCAACCCGATCGAGGAGATCATCAAGTTGTTGAACCTACACTTGGAGAACATGAAGTATA
TCGAGGGGGCCGAGAACACGCTCAAGGAGAAGCTCGCCCGGTTGCAGAAGCAGTAGTTAATGAAC
GTATGAGAATTGGGAAGTGTTGGAAGGTGTTGTGGTGGAGTAGAGGTGGTAGTGGTGGAGTAGAG
GTGGAGTGGTGGAGTAGAGGTGAAATGGTGAAGTAAGAGGGGGTA


Right flanking sequence: Indices 134432 -- 134931
TGAGGTGGTAGAGGTGGTAGAGGTGGAGTAAAGGTGGTGGAGTAGGTGGTAGTGATGGATCGTAA
AGGCTACGATGGAAATTATAAATGGCGTTGCGACCTCCTCTTAGTTATGAGCGTAGACAGTCGCT
CCCGTGGGTATGAGCCAACAAACGCGCTCCTCGTACCACGCGACCCCCTATCCACCCGCTATCCG
ACACCGCGACGTGTGTCCGTTTTTATTTCCCGATTCGTCCACAAACGCGGTACGAACCCCTGAAA
CTACTAAACATCGAGCGGTAACTAGTTGAACATCGGTCGGCGGCTCTGCATTGACGTCTGTCGGA
TCGCCTGACATCATCTCCCCATTGACAGCATTTCCGGGTTATTTCTACTATCTCGTGCTCTTTTG
CTCAATTGCTGTAGGAACTAGGCACCAACAACTGCAACCGCAAACACAGTGCATTGCGTCCGACG
GAGTTCCCCCGCCGCGGAGTTAACTAGCATTGTCGGGGTGTTCTG



Found at i:134440 original size:9 final size:9

Alignment explanation


    Indices: 134421--134457  Score: 56
    Period size: 9  Copynumber: 4.1  Consensus size: 9

     134411 AGGTGGTGGA

                *    
     134421 GTAGGGGTG
          1 GTAGAGGTG

              *      
     134430 GTTGAGGTG
          1 GTAGAGGTG

                     
     134439 GTAGAGGTG
          1 GTAGAGGTG

                     
     134448 GTAGAGGTG
          1 GTAGAGGTG

             
     134457 G
          1 G

     134458 AGTAAAGGTG


Statistics
Matches: 25,  Mismatches: 3, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
   9   25  1.00

ACGTcount: A:0.16, C:0.00, G:0.59, T:0.24


Consensus pattern (9 bp):   
GTAGAGGTG

Left flanking sequence: Indices 133921 -- 134420
CGCTTTTGAGCACGGTGGAGCTCAACGCCCAGGGCGACGGGGTGGCCGACCCCAGCAACCAGTTG
CTGAGCACCGACAAGTTGCGGCAGAAGGCCTACCACAACGCCGAGGTGTTGGACGAGCGCTTGGA
CCTGTTGGGCAAGCTGTTGCTGAGTCTCGTTGGCGAGGTCAACGGGGTGTCGGACGTGTTCAACA
AGCTGTTGATCCTCGACTTTGCCAACGCCACCGGTGACGGCAAGGGCGCCAACCCGATCGAGGAG
ATCATCAAGTTGTTGAACCTACACTTGGAGAACATGAAGTATATCGAGGGGGCCGAGAACACGCT
CAAGGAGAAGCTCGCCCGGTTGCAGAAGCAGTAGTTAATGAACGTATGAGAATTGGGAAGTGTTG
GAAGGTGTTGTGGTGGAGTAGAGGTGGTAGTGGTGGAGTAGAGGTGGAGTGGTGGAGTAGAGGTG
AAATGGTGAAGTAAGAGGGGGTAGTGGTGGAGTAGAGGTGGTGGA


Right flanking sequence: Indices 134458 -- 134957
AGTAAAGGTGGTGGAGTAGGTGGTAGTGATGGATCGTAAAGGCTACGATGGAAATTATAAATGGC
GTTGCGACCTCCTCTTAGTTATGAGCGTAGACAGTCGCTCCCGTGGGTATGAGCCAACAAACGCG
CTCCTCGTACCACGCGACCCCCTATCCACCCGCTATCCGACACCGCGACGTGTGTCCGTTTTTAT
TTCCCGATTCGTCCACAAACGCGGTACGAACCCCTGAAACTACTAAACATCGAGCGGTAACTAGT
TGAACATCGGTCGGCGGCTCTGCATTGACGTCTGTCGGATCGCCTGACATCATCTCCCCATTGAC
AGCATTTCCGGGTTATTTCTACTATCTCGTGCTCTTTTGCTCAATTGCTGTAGGAACTAGGCACC
AACAACTGCAACCGCAAACACAGTGCATTGCGTCCGACGGAGTTCCCCCGCCGCGGAGTTAACTA
GCATTGTCGGGGTGTTCTGCCGAGGCCGTGTACCCCATGTTTTTC



Found at i:141373 original size:9 final size:9

Alignment explanation


    Indices: 141355--141470  Score: 112
    Period size: 9  Copynumber: 13.2  Consensus size: 9

     141345 TTAGTAGAAT

                     
     141355 TGGATTTAC
          1 TGGATTTAC

                 *   
     141364 TGGATCTAC
          1 TGGATTTAC

                    *
     141373 TGGATTTAT
          1 TGGATTTAC

                  * *
     141382 TGGATTCAT
          1 TGGATTTAC

                     
     141391 TGGATTTAC
          1 TGGATTTAC

                 *   
     141400 TGGATCTAC
          1 TGGATTTAC

                     
     141409 TGGA---AC
          1 TGGATTTAC

                     
     141415 TGGATTTAC
          1 TGGATTTAC

                     
     141424 TGGATTTAC
          1 TGGATTTAC

               *     
     141433 TGGGTTTAC
          1 TGGATTTAC

                **  *
     141442 TGGAAATAT
          1 TGGATTTAC

                **   
     141451 TGGAAATAC
          1 TGGATTTAC

                     
     141460 TGGATTTAC
          1 TGGATTTAC

              
     141469 TG
          1 TG

     141471 TATTCATTGG


Statistics
Matches: 89,  Mismatches: 15, Indels: 6
        0.81            0.14        0.05

Matches are distributed among these distances:
   6    6  0.07
   9   83  0.93

ACGTcount: A:0.25, C:0.11, G:0.24, T:0.40


Consensus pattern (9 bp):   
TGGATTTAC

Left flanking sequence: Indices 140855 -- 141354
GCTGGGGGGCGGGCTGCTGGACAAAACCATCCACTTCTGGAACACCACCCTGGGGGCGCGGGTCA
ACACCATCGAGCTGGACCTGCAGATCCTGTCGCTCAACTGGGGCTACGCCCACGGGATCGGGATG
GAGATCGTGGCCACCCACGGGTTCCCCGCTAATAATATTCTGGTGTTCCAGTACCCGACGTTGCA
GAAGACGGGGGAGATTGTCGGGGCACACGACCTGCGGTTGTTGCTGGGGTGCCTTTCGCCGGACG
GGCGCACGTTGGCGACGATTGCGGGGGACGAGAACCTCAAGTTCTGGTCGTTGTTTGACGTGGCA
TGCGCTGCTGCCCACGAGGAGAAGCTGGAGAAGCTGGAGAACATCAAAAACCTAATGGCGCTCCG
TTAGGGTAATTTGCATTTAGTGTTACGGAATGGCATGATGAGAAATGACAGGCCTCGGTGAGGCA
GTGTAGACTTGAATTAGTAGGTTTGATTGCTGGATTTAGTAGAAT


Right flanking sequence: Indices 141471 -- 141970
TATTCATTGGATACTGGAAATACTGGCTTCTTTGCCTTGATTGGATTGATTCATTCTGGCGCGAT
TGTGTGGTTGCAGCCATTTCGAGCGGTAGAGATGTGACTCAGTTTGAGTGTGCGTTAGGCATGCT
TCATCTAGATGCTTTGAAACGCGCTTTCAGCTTCAGCGCCATCATTCCTAGCCACTTTTAACCCC
CTAAGTGGATCTACCCCTTGCGTTGGCGTGGTGTCAATCACTTCCCGATTCGGGTCGCAAAGGTT
CCACTGGCTGCGAAAACCCGATCGGGATAGCAATGGCCACACGCATTCTGGGGATAAAAGGAGCG
AGGCGTGCGGGTGTCGCCGCCACCATGAAGCTCTCGTTTGTGTTTCTTACCGCAATTGCTGCTGC
CAACGCCTACTCGACCTCGTACTACCGGGCAGTGGGTAAGGGTGAGGCGGCGTACTACGCCAACA
ACGGCAAGGGTGAAAAGTGTGTGATTTTCATCAAGACGGACCAGG



Found at i:141418 original size:15 final size:15

Alignment explanation


    Indices: 141398--141427  Score: 51
    Period size: 15  Copynumber: 2.0  Consensus size: 15

     141388 CATTGGATTT

                           
     141398 ACTGGATCTACTGGA
          1 ACTGGATCTACTGGA

                   *       
     141413 ACTGGATTTACTGGA
          1 ACTGGATCTACTGGA

     141428 TTTACTGGGT


Statistics
Matches: 14,  Mismatches: 1, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  15   14  1.00

ACGTcount: A:0.27, C:0.17, G:0.27, T:0.30


Consensus pattern (15 bp):   
ACTGGATCTACTGGA

Left flanking sequence: Indices 140898 -- 141397
ACCACCCTGGGGGCGCGGGTCAACACCATCGAGCTGGACCTGCAGATCCTGTCGCTCAACTGGGG
CTACGCCCACGGGATCGGGATGGAGATCGTGGCCACCCACGGGTTCCCCGCTAATAATATTCTGG
TGTTCCAGTACCCGACGTTGCAGAAGACGGGGGAGATTGTCGGGGCACACGACCTGCGGTTGTTG
CTGGGGTGCCTTTCGCCGGACGGGCGCACGTTGGCGACGATTGCGGGGGACGAGAACCTCAAGTT
CTGGTCGTTGTTTGACGTGGCATGCGCTGCTGCCCACGAGGAGAAGCTGGAGAAGCTGGAGAACA
TCAAAAACCTAATGGCGCTCCGTTAGGGTAATTTGCATTTAGTGTTACGGAATGGCATGATGAGA
AATGACAGGCCTCGGTGAGGCAGTGTAGACTTGAATTAGTAGGTTTGATTGCTGGATTTAGTAGA
ATTGGATTTACTGGATCTACTGGATTTATTGGATTCATTGGATTT


Right flanking sequence: Indices 141428 -- 141927
TTTACTGGGTTTACTGGAAATATTGGAAATACTGGATTTACTGTATTCATTGGATACTGGAAATA
CTGGCTTCTTTGCCTTGATTGGATTGATTCATTCTGGCGCGATTGTGTGGTTGCAGCCATTTCGA
GCGGTAGAGATGTGACTCAGTTTGAGTGTGCGTTAGGCATGCTTCATCTAGATGCTTTGAAACGC
GCTTTCAGCTTCAGCGCCATCATTCCTAGCCACTTTTAACCCCCTAAGTGGATCTACCCCTTGCG
TTGGCGTGGTGTCAATCACTTCCCGATTCGGGTCGCAAAGGTTCCACTGGCTGCGAAAACCCGAT
CGGGATAGCAATGGCCACACGCATTCTGGGGATAAAAGGAGCGAGGCGTGCGGGTGTCGCCGCCA
CCATGAAGCTCTCGTTTGTGTTTCTTACCGCAATTGCTGCTGCCAACGCCTACTCGACCTCGTAC
TACCGGGCAGTGGGTAAGGGTGAGGCGGCGTACTACGCCAACAAC



Found at i:141453 original size:60 final size:60

Alignment explanation


    Indices: 141355--141470  Score: 153
    Period size: 60  Copynumber: 1.9  Consensus size: 60

     141345 TTAGTAGAAT

                                      *    *        **                  
     141355 TGGATTTACTGGATCTACTGGATTTATTGGATTCATTGGATTTACTGGATCTACTGGAAC
          1 TGGATTTACTGGATCTACTGGATTTACTGGAATCATTGGAAATACTGGATCTACTGGAAC

                          *      *                             *     
     141415 TGGATTTACTGGATTTACTGGGTTTACTGGAAAT-ATTGGAAATACTGGATTTACTG
          1 TGGATTTACTGGATCTACTGGATTTACTGG-AATCATTGGAAATACTGGATCTACTG

     141471 TATTCATTGG


Statistics
Matches: 48,  Mismatches: 7, Indels: 2
        0.84            0.12        0.04

Matches are distributed among these distances:
  60   46  0.96
  61    2  0.04

ACGTcount: A:0.25, C:0.11, G:0.24, T:0.40


Consensus pattern (60 bp):   
TGGATTTACTGGATCTACTGGATTTACTGGAATCATTGGAAATACTGGATCTACTGGAAC

Left flanking sequence: Indices 140855 -- 141354
GCTGGGGGGCGGGCTGCTGGACAAAACCATCCACTTCTGGAACACCACCCTGGGGGCGCGGGTCA
ACACCATCGAGCTGGACCTGCAGATCCTGTCGCTCAACTGGGGCTACGCCCACGGGATCGGGATG
GAGATCGTGGCCACCCACGGGTTCCCCGCTAATAATATTCTGGTGTTCCAGTACCCGACGTTGCA
GAAGACGGGGGAGATTGTCGGGGCACACGACCTGCGGTTGTTGCTGGGGTGCCTTTCGCCGGACG
GGCGCACGTTGGCGACGATTGCGGGGGACGAGAACCTCAAGTTCTGGTCGTTGTTTGACGTGGCA
TGCGCTGCTGCCCACGAGGAGAAGCTGGAGAAGCTGGAGAACATCAAAAACCTAATGGCGCTCCG
TTAGGGTAATTTGCATTTAGTGTTACGGAATGGCATGATGAGAAATGACAGGCCTCGGTGAGGCA
GTGTAGACTTGAATTAGTAGGTTTGATTGCTGGATTTAGTAGAAT


Right flanking sequence: Indices 141471 -- 141970
TATTCATTGGATACTGGAAATACTGGCTTCTTTGCCTTGATTGGATTGATTCATTCTGGCGCGAT
TGTGTGGTTGCAGCCATTTCGAGCGGTAGAGATGTGACTCAGTTTGAGTGTGCGTTAGGCATGCT
TCATCTAGATGCTTTGAAACGCGCTTTCAGCTTCAGCGCCATCATTCCTAGCCACTTTTAACCCC
CTAAGTGGATCTACCCCTTGCGTTGGCGTGGTGTCAATCACTTCCCGATTCGGGTCGCAAAGGTT
CCACTGGCTGCGAAAACCCGATCGGGATAGCAATGGCCACACGCATTCTGGGGATAAAAGGAGCG
AGGCGTGCGGGTGTCGCCGCCACCATGAAGCTCTCGTTTGTGTTTCTTACCGCAATTGCTGCTGC
CAACGCCTACTCGACCTCGTACTACCGGGCAGTGGGTAAGGGTGAGGCGGCGTACTACGCCAACA
ACGGCAAGGGTGAAAAGTGTGTGATTTTCATCAAGACGGACCAGG



Found at i:142319 original size:11 final size:11

Alignment explanation


    Indices: 142305--142339  Score: 61
    Period size: 11  Copynumber: 3.2  Consensus size: 11

     142295 CTCCCTGGCT

                       
     142305 GCTCTCTTGTC
          1 GCTCTCTTGTC

                    *  
     142316 GCTCTCTTATC
          1 GCTCTCTTGTC

                       
     142327 GCTCTCTTGTC
          1 GCTCTCTTGTC

              
     142338 GC
          1 GC

     142340 CCCCTTGATC


Statistics
Matches: 22,  Mismatches: 2, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
  11   22  1.00

ACGTcount: A:0.03, C:0.37, G:0.17, T:0.43


Consensus pattern (11 bp):   
GCTCTCTTGTC

Left flanking sequence: Indices 141805 -- 142304
GGTGTCGCCGCCACCATGAAGCTCTCGTTTGTGTTTCTTACCGCAATTGCTGCTGCCAACGCCTA
CTCGACCTCGTACTACCGGGCAGTGGGTAAGGGTGAGGCGGCGTACTACGCCAACAACGGCAAGG
GTGAAAAGTGTGTGATTTTCATCAAGACGGACCAGGACGGGAACGTGAAGCGGGGCGCTGACACG
AACTGGGAGGTGTTGGACCAATTTGTATAGGGAATGTAAGATTGAAGAGAGGTTATGTAGTTGGG
GGTTGGAACCAAAAAAGGGTACAGGGAGAATGGATATTTTCAGTTAATTTCGTAATGTTTCCGTC
CATCTGTCAAGAAGCTCTACTTTTTCATACAATTGGAAGTATTCTCCAAAATACTCAAAAATCAC
GTAAGGTTATCTAAAAGATCAATACCCTGCGTTTTCACCACGAAACACACACCATCTACTATCAC
CCTTCTCTTTTAGCATATACCCACGCCCCTGGCTGCTCCCTGGCT


Right flanking sequence: Indices 142340 -- 142839
CCCCTTGATCGCCCCTCGCTGTCTTCGCCACCGCCACCACCCAATTAATTACCCAATCCAGCAAA
CAACACAGCCCACCAGCCCACACCACGGCTCCGGCCAACCCGGCCCGCTCCTTCGCCGTGCCAAG
CTTTCACTATTGTTATCTCATAGCCCGGTTCGCACGACTCAAAGCGATATGCACCACCTTCGAAT
GCCTAGTTTGGCAGGTCTATCCAGAACACCCCACCAACGAACCACTAAAACCAGCGGCACTGGTC
AGCATTCCCGCATCCCGCCATCCCACCGACTCCGTTTACAACCCGACCCACCTAAAACCCACATT
TCTACCCCCTCCACTCGCCCGTACGGCGCGACACAAGATCAAACATTATTTGTTTGATCGCCCGC
ACCGTTTGTTTCATTATGACGACACGACAACCCTCCAACACCCTAATATTGACCAAGTTGCCTGA
CGCGGTGTATGAGGACCCCACCGAGCTCCTCGAAATCCTCCACGC



Found at i:150654 original size:17 final size:17

Alignment explanation


    Indices: 150632--150667  Score: 72
    Period size: 17  Copynumber: 2.1  Consensus size: 17

     150622 GTTGCCGCAC

                             
     150632 CATTTCCACAACATATT
          1 CATTTCCACAACATATT

                             
     150649 CATTTCCACAACATATT
          1 CATTTCCACAACATATT

              
     150666 CA
          1 CA

     150668 GTTCTAATTA


Statistics
Matches: 19,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  17   19  1.00

ACGTcount: A:0.36, C:0.31, G:0.00, T:0.33


Consensus pattern (17 bp):   
CATTTCCACAACATATT

Left flanking sequence: Indices 150132 -- 150631
CGACCCGAAGACTGGCTTGCGCAACTTGGTGGTTCAGGCCAACATGCTCGACAACTTGATGAAGG
ACATTGACGACTACACTGCTGCCCGTTACATGCAACACCAGCTTCATTTGCGCGAAATGGCCAAG
AACCAGAAGCTTGCTACCCCCCAACCCCAGAAGTCCCAGCTTCTGGTGATGTCTATGGAGATCGA
GGATGACGACGAGACCGACTCAGATGACGAGGAGGCGCACCGGTTGGACGACTCCTTGGACGACT
CTGACGACTCTTCGAGCGAGGAGGAGTACTCGGATGCCGCCCAGGACCTCTCAAACTTGGCTGCG
GCCGTCGCCAAGACCGCCAGCAACCACGAGAGCTACTTCCGCGAAGACGACCTGTTGTACTTCGA
GGAGAACTACATTGCTGCCTAAGCGCGAGCCCTCATCCATTTGCATCCTAGACTTTTTTTGCATT
GGCAACTTACCCCACACCATCATATAGCATGCCGTGTTGCCGCAC


Right flanking sequence: Indices 150668 -- 151167
GTTCTAATTACACATCAAATCGAAACACCTGTAAATAAGACAACATAGACTCTTCGACAATGTCG
AAACGTTGTATTGTTCGGAAATGCCCTACACCTCCTTCGAATGATTGTGAACAAAGAAATTGACA
GTTGCCCTATGGCGATAAAGAAATGCGGGCCCGTTATCTCGACATTTACTTTGCCACACCTATTG
TTAACATTTCTTCTGCGGAAAGAAATCAAGCGTCACAAGATTGGCGTGATCGGTGCCTGGAAGGC
AGTAACGAGTGGGTGGTCGACCCGAGGACTTCCACCCGTTTCCTCCACTTTTACCGCCCACATGC
GCACACGCAAATTCTCTTTTGCGTTCTATTAGGACCAACAAGGCTTTGGATTGCCCACGAGGGGT
TGTGGCGATGTAACTAGCCTCCCCGCATTGTGGCCACATTGACATCACCCCGCAGCCGCCTATAT
TTCGCATAAATGCTTTCAGCGACATTGGCCATGCATGGAGACGCC



Found at i:158169 original size:15 final size:15

Alignment explanation


    Indices: 158157--158201  Score: 63
    Period size: 15  Copynumber: 2.9  Consensus size: 15

     158147 GACAAAGAAT

                            
     158157 GGGAAGCCAAAGAACG
          1 GGGAA-CCAAAGAACG

                           
     158173 GGGAACCAAAGAACG
          1 GGGAACCAAAGAACG

             *  *         
     158188 GAGACCCAAAGAAC
          1 GGGAACCAAAGAAC

     158202 AGAGACGAGC


Statistics
Matches: 27,  Mismatches: 2, Indels: 1
        0.90            0.07        0.03

Matches are distributed among these distances:
  15   22  0.81
  16    5  0.19

ACGTcount: A:0.47, C:0.22, G:0.31, T:0.00


Consensus pattern (15 bp):   
GGGAACCAAAGAACG

Left flanking sequence: Indices 157657 -- 158156
TGTTGTTGAGTCCCTTCCCCGATCCCGAGGCGGGCTTGCCTCTTGAAGGGGTGTCTGCGAGCATC
ACCAACTACACCGGCGACGCTCGCGCCTACTTGGCGAAGTTGCTAGAGCTTTTGGGGGCGCGGTT
CTCGAAGGCGCTTACCAAACAGCTGGACTATTTGATCTCGCGGCTTCCCGAGGGCCAGAAGTACG
AGACCGCGAAGTATAAGTGGTTGGACGCCAACGGGAGCCCGCTGGTGCGGCTCGTGAACCACTTG
TGGCTCGAGGAGTGCTATCGCCAGGTGCGGCGGGTGCTGGAGGACGAGGACACCAAGTACACGTC
CTTCGGGAGCCTTCCGCCGGTGGGCATGGCCCGGTTGGACCACACGCCGCTGCCGGAGACGCCCC
CGGTGGAGGTGTACCTGGACGCTCCGGACAAGGCGTTGAAGCCACGGGCGGCCCAGGCGAAGGCG
CCAAAGCACGGTGACGAGCAAAAGAACCAGGACGAGACAAAGAAT


Right flanking sequence: Indices 158202 -- 158701
AGAGACGAGCTCCTGGCTCCCACGACACAGATACCCCCGCTGCAAGCCACCGTGCCCCTGCAAGC
GCCCCTGCAAGCGCCTCTGCAAGCGCCTCTGCAAGCGCCTCTGCAAGCTATCCTGCAACCGGCCC
CGTCGCTGGACGCTCCCGAGATGCCGCTGTCCCCCGTCAAAATGACCAAAAAGTCCCCCGAGCCC
ATGCCTGCTCCCACCAGCCGCGGGCGCTCAGCGGCCCGCAAGGCGCTGGAAAAGCTCCACACCAG
CATCCACGACCTCAATGAGTACCAGCAGGCGGCCAAAAGCAAGCGCAAGATGCAGACGTACCTCG
ACAACATGGCAGCCGCGGCGAAGGAGGAGTCCCAGGCGAAACGAGCCAAGGTCGCTCCCACGCTC
GTGTGCATTGTCACCGGCTACCAGGACTTGTCGCGACTGGACATCTCCAAGCTCCTGGCGGCAGG
GGTCAAGGTGTCCACCGACTACAAGCAGGCCAACGTGCTTGTGGC



Found at i:158206 original size:15 final size:15

Alignment explanation


    Indices: 158163--158207  Score: 63
    Period size: 15  Copynumber: 3.0  Consensus size: 15

     158153 GAATGGGAAG

                       *  *
     158163 CCAAAGAACGGGGAA
          1 CCAAAGAACGGAGAC

                           
     158178 CCAAAGAACGGAGAC
          1 CCAAAGAACGGAGAC

                     *     
     158193 CCAAAGAACAGAGAC
          1 CCAAAGAACGGAGAC

     158208 GAGCTCCTGG


Statistics
Matches: 27,  Mismatches: 3, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  15   27  1.00

ACGTcount: A:0.49, C:0.24, G:0.27, T:0.00


Consensus pattern (15 bp):   
CCAAAGAACGGAGAC

Left flanking sequence: Indices 157663 -- 158162
TGAGTCCCTTCCCCGATCCCGAGGCGGGCTTGCCTCTTGAAGGGGTGTCTGCGAGCATCACCAAC
TACACCGGCGACGCTCGCGCCTACTTGGCGAAGTTGCTAGAGCTTTTGGGGGCGCGGTTCTCGAA
GGCGCTTACCAAACAGCTGGACTATTTGATCTCGCGGCTTCCCGAGGGCCAGAAGTACGAGACCG
CGAAGTATAAGTGGTTGGACGCCAACGGGAGCCCGCTGGTGCGGCTCGTGAACCACTTGTGGCTC
GAGGAGTGCTATCGCCAGGTGCGGCGGGTGCTGGAGGACGAGGACACCAAGTACACGTCCTTCGG
GAGCCTTCCGCCGGTGGGCATGGCCCGGTTGGACCACACGCCGCTGCCGGAGACGCCCCCGGTGG
AGGTGTACCTGGACGCTCCGGACAAGGCGTTGAAGCCACGGGCGGCCCAGGCGAAGGCGCCAAAG
CACGGTGACGAGCAAAAGAACCAGGACGAGACAAAGAATGGGAAG


Right flanking sequence: Indices 158208 -- 158707
GAGCTCCTGGCTCCCACGACACAGATACCCCCGCTGCAAGCCACCGTGCCCCTGCAAGCGCCCCT
GCAAGCGCCTCTGCAAGCGCCTCTGCAAGCGCCTCTGCAAGCTATCCTGCAACCGGCCCCGTCGC
TGGACGCTCCCGAGATGCCGCTGTCCCCCGTCAAAATGACCAAAAAGTCCCCCGAGCCCATGCCT
GCTCCCACCAGCCGCGGGCGCTCAGCGGCCCGCAAGGCGCTGGAAAAGCTCCACACCAGCATCCA
CGACCTCAATGAGTACCAGCAGGCGGCCAAAAGCAAGCGCAAGATGCAGACGTACCTCGACAACA
TGGCAGCCGCGGCGAAGGAGGAGTCCCAGGCGAAACGAGCCAAGGTCGCTCCCACGCTCGTGTGC
ATTGTCACCGGCTACCAGGACTTGTCGCGACTGGACATCTCCAAGCTCCTGGCGGCAGGGGTCAA
GGTGTCCACCGACTACAAGCAGGCCAACGTGCTTGTGGCCCCCAA



Found at i:158272 original size:12 final size:12

Alignment explanation


    Indices: 158259--158314  Score: 103
    Period size: 12  Copynumber: 4.7  Consensus size: 12

     158249 CACCGTGCCC

                       *
     158259 CTGCAAGCGCCC
          1 CTGCAAGCGCCT

                        
     158271 CTGCAAGCGCCT
          1 CTGCAAGCGCCT

                        
     158283 CTGCAAGCGCCT
          1 CTGCAAGCGCCT

                        
     158295 CTGCAAGCGCCT
          1 CTGCAAGCGCCT

                    
     158307 CTGCAAGC
          1 CTGCAAGC

     158315 TATCCTGCAA


Statistics
Matches: 43,  Mismatches: 1, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
  12   43  1.00

ACGTcount: A:0.18, C:0.43, G:0.25, T:0.14


Consensus pattern (12 bp):   
CTGCAAGCGCCT

Left flanking sequence: Indices 157759 -- 158258
AGTTGCTAGAGCTTTTGGGGGCGCGGTTCTCGAAGGCGCTTACCAAACAGCTGGACTATTTGATC
TCGCGGCTTCCCGAGGGCCAGAAGTACGAGACCGCGAAGTATAAGTGGTTGGACGCCAACGGGAG
CCCGCTGGTGCGGCTCGTGAACCACTTGTGGCTCGAGGAGTGCTATCGCCAGGTGCGGCGGGTGC
TGGAGGACGAGGACACCAAGTACACGTCCTTCGGGAGCCTTCCGCCGGTGGGCATGGCCCGGTTG
GACCACACGCCGCTGCCGGAGACGCCCCCGGTGGAGGTGTACCTGGACGCTCCGGACAAGGCGTT
GAAGCCACGGGCGGCCCAGGCGAAGGCGCCAAAGCACGGTGACGAGCAAAAGAACCAGGACGAGA
CAAAGAATGGGAAGCCAAAGAACGGGGAACCAAAGAACGGAGACCCAAAGAACAGAGACGAGCTC
CTGGCTCCCACGACACAGATACCCCCGCTGCAAGCCACCGTGCCC


Right flanking sequence: Indices 158315 -- 158814
TATCCTGCAACCGGCCCCGTCGCTGGACGCTCCCGAGATGCCGCTGTCCCCCGTCAAAATGACCA
AAAAGTCCCCCGAGCCCATGCCTGCTCCCACCAGCCGCGGGCGCTCAGCGGCCCGCAAGGCGCTG
GAAAAGCTCCACACCAGCATCCACGACCTCAATGAGTACCAGCAGGCGGCCAAAAGCAAGCGCAA
GATGCAGACGTACCTCGACAACATGGCAGCCGCGGCGAAGGAGGAGTCCCAGGCGAAACGAGCCA
AGGTCGCTCCCACGCTCGTGTGCATTGTCACCGGCTACCAGGACTTGTCGCGACTGGACATCTCC
AAGCTCCTGGCGGCAGGGGTCAAGGTGTCCACCGACTACAAGCAGGCCAACGTGCTTGTGGCCCC
CAAGGTGATGCGGACGGAGAAGTTCTTGTGCTCGCTAGCCACCGTAGACCGCGTAGTGCACCCGT
CGTTCCTCAAGGCGGTGATTCTGGGCGAGGCGCTCGCCACGCTGG



Found at i:158322 original size:24 final size:23

Alignment explanation


    Indices: 158259--158324  Score: 78
    Period size: 24  Copynumber: 2.7  Consensus size: 23

     158249 CACCGTGCCC

                     *              
     158259 CTGCAAGCGCCCCTGCAAGCGCCT
          1 CTGCAAGC-ACCCTGCAAGCGCCT

                    *               
     158283 CTGCAAGCGCCTCTGCAAGCGCCT
          1 CTGCAAGCACC-CTGCAAGCGCCT

                      *       
     158307 CTGCAAGCTATCCTGCAA
          1 CTGCAAGC-ACCCTGCAA

     158325 CCGGCCCCGT


Statistics
Matches: 37,  Mismatches: 3, Indels: 4
        0.84            0.07        0.09

Matches are distributed among these distances:
  23    2  0.05
  24   34  0.92
  25    1  0.03

ACGTcount: A:0.20, C:0.41, G:0.23, T:0.17


Consensus pattern (23 bp):   
CTGCAAGCACCCTGCAAGCGCCT

Left flanking sequence: Indices 157759 -- 158258
AGTTGCTAGAGCTTTTGGGGGCGCGGTTCTCGAAGGCGCTTACCAAACAGCTGGACTATTTGATC
TCGCGGCTTCCCGAGGGCCAGAAGTACGAGACCGCGAAGTATAAGTGGTTGGACGCCAACGGGAG
CCCGCTGGTGCGGCTCGTGAACCACTTGTGGCTCGAGGAGTGCTATCGCCAGGTGCGGCGGGTGC
TGGAGGACGAGGACACCAAGTACACGTCCTTCGGGAGCCTTCCGCCGGTGGGCATGGCCCGGTTG
GACCACACGCCGCTGCCGGAGACGCCCCCGGTGGAGGTGTACCTGGACGCTCCGGACAAGGCGTT
GAAGCCACGGGCGGCCCAGGCGAAGGCGCCAAAGCACGGTGACGAGCAAAAGAACCAGGACGAGA
CAAAGAATGGGAAGCCAAAGAACGGGGAACCAAAGAACGGAGACCCAAAGAACAGAGACGAGCTC
CTGGCTCCCACGACACAGATACCCCCGCTGCAAGCCACCGTGCCC


Right flanking sequence: Indices 158325 -- 158824
CCGGCCCCGTCGCTGGACGCTCCCGAGATGCCGCTGTCCCCCGTCAAAATGACCAAAAAGTCCCC
CGAGCCCATGCCTGCTCCCACCAGCCGCGGGCGCTCAGCGGCCCGCAAGGCGCTGGAAAAGCTCC
ACACCAGCATCCACGACCTCAATGAGTACCAGCAGGCGGCCAAAAGCAAGCGCAAGATGCAGACG
TACCTCGACAACATGGCAGCCGCGGCGAAGGAGGAGTCCCAGGCGAAACGAGCCAAGGTCGCTCC
CACGCTCGTGTGCATTGTCACCGGCTACCAGGACTTGTCGCGACTGGACATCTCCAAGCTCCTGG
CGGCAGGGGTCAAGGTGTCCACCGACTACAAGCAGGCCAACGTGCTTGTGGCCCCCAAGGTGATG
CGGACGGAGAAGTTCTTGTGCTCGCTAGCCACCGTAGACCGCGTAGTGCACCCGTCGTTCCTCAA
GGCGGTGATTCTGGGCGAGGCGCTCGCCACGCTGGTGGACGACTA



Found at i:159725 original size:16 final size:16

Alignment explanation


    Indices: 159704--159754  Score: 93
    Period size: 16  Copynumber: 3.2  Consensus size: 16

     159694 ATCCAAACCA

                            
     159704 CATCTTTGACTCTACT
          1 CATCTTTGACTCTACT

                            
     159720 CATCTTTGACTCTACT
          1 CATCTTTGACTCTACT

                    *       
     159736 CATCTTTGGCTCTACT
          1 CATCTTTGACTCTACT

               
     159752 CAT
          1 CAT

     159755 TCGCCACATA


Statistics
Matches: 34,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  16   34  1.00

ACGTcount: A:0.18, C:0.31, G:0.08, T:0.43


Consensus pattern (16 bp):   
CATCTTTGACTCTACT

Left flanking sequence: Indices 159204 -- 159703
ATCTTCCACATGGAGCTCCAGAGCTTTGATGCTTTCAGGTTGTAGGTTTGGAGCTAGTCTACAAA
GTGTCAGTGTATGAATATAGTTAATAGGTCTGTCATTATCTGTCCACGAGAAGTAGCGGTCTGGT
CAGGGGAAGAAGCTGATTCAGACATGGCACTATTCCCATTGCCATAATACAAGTATAGTTGTTGT
TTCATACGGTGGGGATACCTACATCAATGGCCATGCTCTTTCTAGCCACAGCATGGCTATAATTA
TTTCTGGCCACAGATAACTAGACTCATTCCTCGCCACATTGGCTCTGCATTCAGCCACAGCAGCT
ATACTCTTTCCTAGCTATTAGCTATTCTCATTTGCCACATACTTGGCTATACATGTTCCTAGCCA
CAGATGTCCATCCTCGTTTCTAGCCACCGAAATGGCTAGCTATGCACTTTCTAGCCACATCCTAT
TTTATACTCATTCCTAGCCACAGATGACTATACTCATCCAAACCA


Right flanking sequence: Indices 159755 -- 160254
TCGCCACATATAACACCCACCCACACACCACACTCACTTCATTCACTCGTTTAATGATACACACG
GCCCACTACCGCTGGGCCAGCAACAGACACCTGCTGCCAGTCTCATAGTACATTCCATAACTAAA
TATCGATCAAACTGGGACCCTCGCCCTGTCTATACTGCTGCTGCGGCTGCTGGTACTGCTGGTTG
CCAAAGCCGTACCCCGTGGCCACCGGCTGCTGCTGCGGCGGCCCGGACGCCTGGCCCTGGTAGCC
GATCCCCGTGTTCAAAAACGGGTTGCCCGTGGCGTTGGAACTCACGCGCACATCCAGCAGCGTCT
CCTGGCGGTACCCCGTGCCCTGCGACGGGATAAACGTCCCCGTCTTGGTGTGCTGGTGGGGAATC
CGCATGTTGCCGGTGTTGCCAAACGTGTCGACGCCCGTGCCCTGCGCAAGCAAGTTGTTGAGCTC
CAGGTGGGTGTCGTCGCCAAACTTGGACCCCAGCGTGTTCTGGGG



Found at i:160381 original size:12 final size:12

Alignment explanation


    Indices: 160364--160417  Score: 78
    Period size: 12  Copynumber: 4.8  Consensus size: 12

     160354 GTACATTGCC

                        
     160364 TGCTGGGCCTGT
          1 TGCTGGGCCTGT

                        
     160376 TGCTGGGCCTGT
          1 TGCTGGGCCTGT

                        
     160388 TGCTGGGCC---
          1 TGCTGGGCCTGT

                       *
     160397 TGCTGGGCCTGC
          1 TGCTGGGCCTGT

                     
     160409 TGCTGGGCC
          1 TGCTGGGCC

     160418 ATGGCGTTCA


Statistics
Matches: 39,  Mismatches: 0, Indels: 6
        0.87            0.00        0.13

Matches are distributed among these distances:
   9    9  0.23
  12   30  0.77

ACGTcount: A:0.00, C:0.30, G:0.43, T:0.28


Consensus pattern (12 bp):   
TGCTGGGCCTGT

Left flanking sequence: Indices 159864 -- 160363
ATAGTACATTCCATAACTAAATATCGATCAAACTGGGACCCTCGCCCTGTCTATACTGCTGCTGC
GGCTGCTGGTACTGCTGGTTGCCAAAGCCGTACCCCGTGGCCACCGGCTGCTGCTGCGGCGGCCC
GGACGCCTGGCCCTGGTAGCCGATCCCCGTGTTCAAAAACGGGTTGCCCGTGGCGTTGGAACTCA
CGCGCACATCCAGCAGCGTCTCCTGGCGGTACCCCGTGCCCTGCGACGGGATAAACGTCCCCGTC
TTGGTGTGCTGGTGGGGAATCCGCATGTTGCCGGTGTTGCCAAACGTGTCGACGCCCGTGCCCTG
CGCAAGCAAGTTGTTGAGCTCCAGGTGGGTGTCGTCGCCAAACTTGGACCCCAGCGTGTTCTGGG
GCTTGAGCTGCGGCTGCTGGCTCGCGGTGTCCTGGGCAAACGGCAGGTTGGAGTGGTTCTGGAAC
GGGCCCGAAGCTGCCTGCTGGAACGCGTTCAGCGTGTACATTGCC


Right flanking sequence: Indices 160418 -- 160917
ATGGCGTTCATCAGGTCCAGTTTTTGCTGCTGCGGCTCGGTGTTCAATGCAAAGGGGTTGTTGGA
GCCCGTCTTCAACGGCTGCAACTGCTCCTGGTCGTGGTGGAACCCCGTGAACGCCGGCTGCTGGT
ACCCCGTGGGCGCGCCCGTCATCGCCGGGTTCTGGATCGGGTTGCCAAACATGTCAAAGAACTGG
TTCTGCTGCTGCTGCTGCTGCTGCTGCTGCAACCACGCCGTCTGCTGCGCCTGCAATTGCGCCTG
CTGCATCGCCTGCTGCTGGGCCTGCTGCTGGGCCTGCTGTTGCAACCACGCCTGCTGCTGGGCGT
TCTGGTCCATCATGAACTGCGGCTGGTCGTCCAAGTCGAGCAAGTTGTTGTTTTGCTTGCGCATT
TCCTCCTCTTCCAACAGGAGCTTCAACGCCGCCGCCAACTCCGGGTCCTCGGGCTCGTGGTTGCG
GTGGCGCTCCTCGTCCTCCGCGGTCTGGCGCAGCAACTCCAACGC



Found at i:160400 original size:21 final size:21

Alignment explanation


    Indices: 160376--160417  Score: 75
    Period size: 21  Copynumber: 2.0  Consensus size: 21

     160366 CTGGGCCTGT

                       *         
     160376 TGCTGGGCCTGTTGCTGGGCC
          1 TGCTGGGCCTGCTGCTGGGCC

                                 
     160397 TGCTGGGCCTGCTGCTGGGCC
          1 TGCTGGGCCTGCTGCTGGGCC

     160418 ATGGCGTTCA


Statistics
Matches: 20,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  21   20  1.00

ACGTcount: A:0.00, C:0.31, G:0.43, T:0.26


Consensus pattern (21 bp):   
TGCTGGGCCTGCTGCTGGGCC

Left flanking sequence: Indices 159876 -- 160375
ATAACTAAATATCGATCAAACTGGGACCCTCGCCCTGTCTATACTGCTGCTGCGGCTGCTGGTAC
TGCTGGTTGCCAAAGCCGTACCCCGTGGCCACCGGCTGCTGCTGCGGCGGCCCGGACGCCTGGCC
CTGGTAGCCGATCCCCGTGTTCAAAAACGGGTTGCCCGTGGCGTTGGAACTCACGCGCACATCCA
GCAGCGTCTCCTGGCGGTACCCCGTGCCCTGCGACGGGATAAACGTCCCCGTCTTGGTGTGCTGG
TGGGGAATCCGCATGTTGCCGGTGTTGCCAAACGTGTCGACGCCCGTGCCCTGCGCAAGCAAGTT
GTTGAGCTCCAGGTGGGTGTCGTCGCCAAACTTGGACCCCAGCGTGTTCTGGGGCTTGAGCTGCG
GCTGCTGGCTCGCGGTGTCCTGGGCAAACGGCAGGTTGGAGTGGTTCTGGAACGGGCCCGAAGCT
GCCTGCTGGAACGCGTTCAGCGTGTACATTGCCTGCTGGGCCTGT


Right flanking sequence: Indices 160418 -- 160917
ATGGCGTTCATCAGGTCCAGTTTTTGCTGCTGCGGCTCGGTGTTCAATGCAAAGGGGTTGTTGGA
GCCCGTCTTCAACGGCTGCAACTGCTCCTGGTCGTGGTGGAACCCCGTGAACGCCGGCTGCTGGT
ACCCCGTGGGCGCGCCCGTCATCGCCGGGTTCTGGATCGGGTTGCCAAACATGTCAAAGAACTGG
TTCTGCTGCTGCTGCTGCTGCTGCTGCTGCAACCACGCCGTCTGCTGCGCCTGCAATTGCGCCTG
CTGCATCGCCTGCTGCTGGGCCTGCTGCTGGGCCTGCTGTTGCAACCACGCCTGCTGCTGGGCGT
TCTGGTCCATCATGAACTGCGGCTGGTCGTCCAAGTCGAGCAAGTTGTTGTTTTGCTTGCGCATT
TCCTCCTCTTCCAACAGGAGCTTCAACGCCGCCGCCAACTCCGGGTCCTCGGGCTCGTGGTTGCG
GTGGCGCTCCTCGTCCTCCGCGGTCTGGCGCAGCAACTCCAACGC



Found at i:160660 original size:3 final size:3

Alignment explanation


    Indices: 160615--160642  Score: 56
    Period size: 3  Copynumber: 9.3  Consensus size: 3

     160605 AGAACTGGTT

                                                 
     160615 CTG CTG CTG CTG CTG CTG CTG CTG CTG C
          1 CTG CTG CTG CTG CTG CTG CTG CTG CTG C

     160643 AACCACGCCG


Statistics
Matches: 25,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   25  1.00

ACGTcount: A:0.00, C:0.36, G:0.32, T:0.32


Consensus pattern (3 bp):   
CTG

Left flanking sequence: Indices 160115 -- 160614
GTCCCCGTCTTGGTGTGCTGGTGGGGAATCCGCATGTTGCCGGTGTTGCCAAACGTGTCGACGCC
CGTGCCCTGCGCAAGCAAGTTGTTGAGCTCCAGGTGGGTGTCGTCGCCAAACTTGGACCCCAGCG
TGTTCTGGGGCTTGAGCTGCGGCTGCTGGCTCGCGGTGTCCTGGGCAAACGGCAGGTTGGAGTGG
TTCTGGAACGGGCCCGAAGCTGCCTGCTGGAACGCGTTCAGCGTGTACATTGCCTGCTGGGCCTG
TTGCTGGGCCTGTTGCTGGGCCTGCTGGGCCTGCTGCTGGGCCATGGCGTTCATCAGGTCCAGTT
TTTGCTGCTGCGGCTCGGTGTTCAATGCAAAGGGGTTGTTGGAGCCCGTCTTCAACGGCTGCAAC
TGCTCCTGGTCGTGGTGGAACCCCGTGAACGCCGGCTGCTGGTACCCCGTGGGCGCGCCCGTCAT
CGCCGGGTTCTGGATCGGGTTGCCAAACATGTCAAAGAACTGGTT


Right flanking sequence: Indices 160643 -- 161142
AACCACGCCGTCTGCTGCGCCTGCAATTGCGCCTGCTGCATCGCCTGCTGCTGGGCCTGCTGCTG
GGCCTGCTGTTGCAACCACGCCTGCTGCTGGGCGTTCTGGTCCATCATGAACTGCGGCTGGTCGT
CCAAGTCGAGCAAGTTGTTGTTTTGCTTGCGCATTTCCTCCTCTTCCAACAGGAGCTTCAACGCC
GCCGCCAACTCCGGGTCCTCGGGCTCGTGGTTGCGGTGGCGCTCCTCGTCCTCCGCGGTCTGGCG
CAGCAACTCCAACGCACGCTCCAACTCCGCGTCGTAGGGGTCGTTGCGCCGCTGGGTGTTCAGCC
GCTCGCGGTTGCGGCGGGGGCGGTCCGAGTTGGCGTTGTTGGCCCGTTCGCGGCGCAACCGCTCG
TCGTCCTGCAAGAGCGCCACCAACTCCTTGGCCTTGACCCGGATCAACGCGCCCTGGTCCACGTT
GTTGTCGTCAAAGTGGATGAACTCGCGGAGGGTCTTGATGATGTA



Found at i:160681 original size:24 final size:24

Alignment explanation


    Indices: 160627--160714  Score: 65
    Period size: 24  Copynumber: 3.7  Consensus size: 24

     160617 GCTGCTGCTG

                                **   
     160627 CTGCTGCTGCTG-CTGCAACCACGC
          1 CTGCTGCTGC-GCCTGCAACTGCGC

                               *     
     160651 C-GTCTGCTGCGCCTGCAATTGCGC
          1 CTG-CTGCTGCGCCTGCAACTGCGC

                             **   *  
     160675 CTGCTGCAT-CGCCTGCTGCTGGGC
          1 CTGCTGC-TGCGCCTGCAACTGCGC

                     *      
     160699 CTGCTGCTGGGCCTGC
          1 CTGCTGCTGCGCCTGC

     160715 TGTTGCAACC


Statistics
Matches: 51,  Mismatches: 8, Indels: 10
        0.74            0.12        0.14

Matches are distributed among these distances:
  23    3  0.06
  24   46  0.90
  25    2  0.04

ACGTcount: A:0.07, C:0.39, G:0.31, T:0.24


Consensus pattern (24 bp):   
CTGCTGCTGCGCCTGCAACTGCGC

Left flanking sequence: Indices 160127 -- 160626
GTGTGCTGGTGGGGAATCCGCATGTTGCCGGTGTTGCCAAACGTGTCGACGCCCGTGCCCTGCGC
AAGCAAGTTGTTGAGCTCCAGGTGGGTGTCGTCGCCAAACTTGGACCCCAGCGTGTTCTGGGGCT
TGAGCTGCGGCTGCTGGCTCGCGGTGTCCTGGGCAAACGGCAGGTTGGAGTGGTTCTGGAACGGG
CCCGAAGCTGCCTGCTGGAACGCGTTCAGCGTGTACATTGCCTGCTGGGCCTGTTGCTGGGCCTG
TTGCTGGGCCTGCTGGGCCTGCTGCTGGGCCATGGCGTTCATCAGGTCCAGTTTTTGCTGCTGCG
GCTCGGTGTTCAATGCAAAGGGGTTGTTGGAGCCCGTCTTCAACGGCTGCAACTGCTCCTGGTCG
TGGTGGAACCCCGTGAACGCCGGCTGCTGGTACCCCGTGGGCGCGCCCGTCATCGCCGGGTTCTG
GATCGGGTTGCCAAACATGTCAAAGAACTGGTTCTGCTGCTGCTG


Right flanking sequence: Indices 160715 -- 161214
TGTTGCAACCACGCCTGCTGCTGGGCGTTCTGGTCCATCATGAACTGCGGCTGGTCGTCCAAGTC
GAGCAAGTTGTTGTTTTGCTTGCGCATTTCCTCCTCTTCCAACAGGAGCTTCAACGCCGCCGCCA
ACTCCGGGTCCTCGGGCTCGTGGTTGCGGTGGCGCTCCTCGTCCTCCGCGGTCTGGCGCAGCAAC
TCCAACGCACGCTCCAACTCCGCGTCGTAGGGGTCGTTGCGCCGCTGGGTGTTCAGCCGCTCGCG
GTTGCGGCGGGGGCGGTCCGAGTTGGCGTTGTTGGCCCGTTCGCGGCGCAACCGCTCGTCGTCCT
GCAAGAGCGCCACCAACTCCTTGGCCTTGACCCGGATCAACGCGCCCTGGTCCACGTTGTTGTCG
TCAAAGTGGATGAACTCGCGGAGGGTCTTGATGATGTACAAGTTGTCCTTGGCCCACAACACGCA
CTTGTCCAGGCCAAAACGCACCAAGTAGTCGAGCACCGTCAACAG



Found at i:160700 original size:12 final size:12

Alignment explanation


    Indices: 160685--160716  Score: 64
    Period size: 12  Copynumber: 2.7  Consensus size: 12

     160675 CTGCTGCATC

                        
     160685 GCCTGCTGCTGG
          1 GCCTGCTGCTGG

                        
     160697 GCCTGCTGCTGG
          1 GCCTGCTGCTGG

                    
     160709 GCCTGCTG
          1 GCCTGCTG

     160717 TTGCAACCAC


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   20  1.00

ACGTcount: A:0.00, C:0.34, G:0.41, T:0.25


Consensus pattern (12 bp):   
GCCTGCTGCTGG

Left flanking sequence: Indices 160185 -- 160684
CCTGCGCAAGCAAGTTGTTGAGCTCCAGGTGGGTGTCGTCGCCAAACTTGGACCCCAGCGTGTTC
TGGGGCTTGAGCTGCGGCTGCTGGCTCGCGGTGTCCTGGGCAAACGGCAGGTTGGAGTGGTTCTG
GAACGGGCCCGAAGCTGCCTGCTGGAACGCGTTCAGCGTGTACATTGCCTGCTGGGCCTGTTGCT
GGGCCTGTTGCTGGGCCTGCTGGGCCTGCTGCTGGGCCATGGCGTTCATCAGGTCCAGTTTTTGC
TGCTGCGGCTCGGTGTTCAATGCAAAGGGGTTGTTGGAGCCCGTCTTCAACGGCTGCAACTGCTC
CTGGTCGTGGTGGAACCCCGTGAACGCCGGCTGCTGGTACCCCGTGGGCGCGCCCGTCATCGCCG
GGTTCTGGATCGGGTTGCCAAACATGTCAAAGAACTGGTTCTGCTGCTGCTGCTGCTGCTGCTGC
TGCAACCACGCCGTCTGCTGCGCCTGCAATTGCGCCTGCTGCATC


Right flanking sequence: Indices 160717 -- 161216
TTGCAACCACGCCTGCTGCTGGGCGTTCTGGTCCATCATGAACTGCGGCTGGTCGTCCAAGTCGA
GCAAGTTGTTGTTTTGCTTGCGCATTTCCTCCTCTTCCAACAGGAGCTTCAACGCCGCCGCCAAC
TCCGGGTCCTCGGGCTCGTGGTTGCGGTGGCGCTCCTCGTCCTCCGCGGTCTGGCGCAGCAACTC
CAACGCACGCTCCAACTCCGCGTCGTAGGGGTCGTTGCGCCGCTGGGTGTTCAGCCGCTCGCGGT
TGCGGCGGGGGCGGTCCGAGTTGGCGTTGTTGGCCCGTTCGCGGCGCAACCGCTCGTCGTCCTGC
AAGAGCGCCACCAACTCCTTGGCCTTGACCCGGATCAACGCGCCCTGGTCCACGTTGTTGTCGTC
AAAGTGGATGAACTCGCGGAGGGTCTTGATGATGTACAAGTTGTCCTTGGCCCACAACACGCACT
TGTCCAGGCCAAAACGCACCAAGTAGTCGAGCACCGTCAACAGCT



Found at i:161923 original size:20 final size:20

Alignment explanation


    Indices: 161879--161980  Score: 127
    Period size: 20  Copynumber: 5.1  Consensus size: 20

     161869 GGTGTACGAT

                                
     161879 GACT-GCAATGGGTAGT-CG
          1 GACTGGCAATGGGTAGTACG

              *         *       
     161897 GAATGGCAATGGCTAGTACG
          1 GACTGGCAATGGGTAGTACG

                                
     161917 GACTGGCAATGGGTAGTACG
          1 GACTGGCAATGGGTAGTACG

            *                    
     161937 AACTGGCAATGTGGTAGTACG
          1 GACTGGCAATG-GGTAGTACG

            *               *    
     161958 AACTGGCAATGTGGTATTACG
          1 GACTGGCAATG-GGTAGTACG

              
     161979 GA
          1 GA

     161981 AGGGCAATGT


Statistics
Matches: 74,  Mismatches: 7, Indels: 3
        0.88            0.08        0.04

Matches are distributed among these distances:
  18    3  0.04
  19   11  0.15
  20   30  0.41
  21   30  0.41

ACGTcount: A:0.27, C:0.15, G:0.35, T:0.23


Consensus pattern (20 bp):   
GACTGGCAATGGGTAGTACG

Left flanking sequence: Indices 161379 -- 161878
GCCGCTGCACACTCAGGTAGCCGTTGGTGACGTTCTTGAACGTACGGACAATCAGCTTCAGCATG
GGGTGTCGTTGAATTGCTTGGAATTTGTTCGCAGCAAGCCGCAGTGGTTAGTGGGGGGCCGGGCA
GCGGGGTGGAGCGGGTGCGGGACAGGGAAAAGCGGGGCGCGGGACGTGGTGGTGGGGGTGCCAAT
GGGCTGGCGGCAGGCTTGTCTGGCGGATTTGGGCGTGGCCGGGCTGGTTTGGGTCGGTGGGTGGC
GTGGTCACGTGGGCACTCCGCCTGCCGATCCGGAATAGCGTGACAACGGGAGCGGTCGGAGCTCA
GCAGCGGTGCGGGAGAGAGGCGGGCGAGCGAGAGGAGCGGGCGGGGTAGATGGGGGGTGGCGGTG
GCTACGGGGGGACAAACTCCGGTGGCGCTGGCGTGGCCGGTTCGGACTTGCGGTCCCCATGGGCA
TAAACGATGTCAGGAGGTGAGAATGACTGATAAGTGGTGTACGAT


Right flanking sequence: Indices 161981 -- 162480
AGGGCAATGTGATAGGCCAGTGGTGTGGTACGCTGGGGTATACCACGGCTGGAAGTACCATTATT
GTTGGTGTAGTAACTGCTATCACAATGACTGTAAGTACGATGTTCGTAGTGTAGACGGAGTTAAC
ACATTGGGCCTATTCGCGACGCCACAGTTGTGACTGTGACGTTGCGAGACACGGAAGCACCCCCA
CCACGCCATTTCCGGATACCGTAGTGATCGAGGGGCCATTGTGTCTGTTCGGCTAGATCCAGGAC
TTGTCCGATGCCAAGCTCGCCCCACCTAAAACAACGGTTGGGTGGCGTAACCCGCGGGTTTTCGA
CCAAAGCCCACGCAAATTTCAAATACAGTGGGCACCCCAGTTGCCCCGTCGCTGTGCCAGTGCCT
AAGCCCATGATCCACCCGCGTCAAATCCCTCGGCTTCGTGTCTACTTCGTGCATACACTTCGGCG
ACATCTCAAGTCGTTCTATTATCGATCTAATCCAGAGGTAGTTCC



Found at i:161954 original size:21 final size:21

Alignment explanation


    Indices: 161867--161991  Score: 122
    Period size: 21  Copynumber: 6.1  Consensus size: 21

     161857 TGACTGATAA

                                   
     161867 GTGGT-GTACGATGACT-GCAAT
          1 GTGGTAGTACGA--ACTGGCAAT

                                  
     161888 G-GGTAGT-CGGAA-TGGCAAT
          1 GTGGTAGTAC-GAACTGGCAAT

               *       *         
     161907 G-GCTAGTACGGACTGGCAAT
          1 GTGGTAGTACGAACTGGCAAT

                                 
     161927 G-GGTAGTACGAACTGGCAAT
          1 GTGGTAGTACGAACTGGCAAT

                                 
     161947 GTGGTAGTACGAACTGGCAAT
          1 GTGGTAGTACGAACTGGCAAT

                  *        *      
     161968 GTGGTATTACGGAA-GGGCAAT
          1 GTGGTAGTAC-GAACTGGCAAT

               
     161989 GTG
          1 GTG

     161992 ATAGGCCAGT


Statistics
Matches: 91,  Mismatches: 6, Indels: 14
        0.82            0.05        0.13

Matches are distributed among these distances:
  18    1  0.01
  19   14  0.15
  20   31  0.34
  21   42  0.46
  22    3  0.03

ACGTcount: A:0.26, C:0.14, G:0.37, T:0.23


Consensus pattern (21 bp):   
GTGGTAGTACGAACTGGCAAT

Left flanking sequence: Indices 161367 -- 161866
CCAGCCGGACGAGCCGCTGCACACTCAGGTAGCCGTTGGTGACGTTCTTGAACGTACGGACAATC
AGCTTCAGCATGGGGTGTCGTTGAATTGCTTGGAATTTGTTCGCAGCAAGCCGCAGTGGTTAGTG
GGGGGCCGGGCAGCGGGGTGGAGCGGGTGCGGGACAGGGAAAAGCGGGGCGCGGGACGTGGTGGT
GGGGGTGCCAATGGGCTGGCGGCAGGCTTGTCTGGCGGATTTGGGCGTGGCCGGGCTGGTTTGGG
TCGGTGGGTGGCGTGGTCACGTGGGCACTCCGCCTGCCGATCCGGAATAGCGTGACAACGGGAGC
GGTCGGAGCTCAGCAGCGGTGCGGGAGAGAGGCGGGCGAGCGAGAGGAGCGGGCGGGGTAGATGG
GGGGTGGCGGTGGCTACGGGGGGACAAACTCCGGTGGCGCTGGCGTGGCCGGTTCGGACTTGCGG
TCCCCATGGGCATAAACGATGTCAGGAGGTGAGAATGACTGATAA


Right flanking sequence: Indices 161992 -- 162491
ATAGGCCAGTGGTGTGGTACGCTGGGGTATACCACGGCTGGAAGTACCATTATTGTTGGTGTAGT
AACTGCTATCACAATGACTGTAAGTACGATGTTCGTAGTGTAGACGGAGTTAACACATTGGGCCT
ATTCGCGACGCCACAGTTGTGACTGTGACGTTGCGAGACACGGAAGCACCCCCACCACGCCATTT
CCGGATACCGTAGTGATCGAGGGGCCATTGTGTCTGTTCGGCTAGATCCAGGACTTGTCCGATGC
CAAGCTCGCCCCACCTAAAACAACGGTTGGGTGGCGTAACCCGCGGGTTTTCGACCAAAGCCCAC
GCAAATTTCAAATACAGTGGGCACCCCAGTTGCCCCGTCGCTGTGCCAGTGCCTAAGCCCATGAT
CCACCCGCGTCAAATCCCTCGGCTTCGTGTCTACTTCGTGCATACACTTCGGCGACATCTCAAGT
CGTTCTATTATCGATCTAATCCAGAGGTAGTTCCGATCGCGCCCG



Found at i:163425 original size:15 final size:14

Alignment explanation


    Indices: 163399--163434  Score: 63
    Period size: 15  Copynumber: 2.5  Consensus size: 14

     163389 CCTCGCATCG

                          
     163399 CCACGTCTTCTTCC
          1 CCACGTCTTCTTCC

                           
     163413 CCACGTACTTCTTCC
          1 CCACGT-CTTCTTCC

                   
     163428 CCACGTC
          1 CCACGTC

     163435 CCTCTTGTCT


Statistics
Matches: 21,  Mismatches: 0, Indels: 2
        0.91            0.00        0.09

Matches are distributed among these distances:
  14    7  0.33
  15   14  0.67

ACGTcount: A:0.11, C:0.50, G:0.08, T:0.31


Consensus pattern (14 bp):   
CCACGTCTTCTTCC

Left flanking sequence: Indices 162899 -- 163398
GAACACGGGGTGGTAGCAAGGCACATTGTCGTGGAGTATCTCGTATCGGAGAATTCGGTTTGTGC
CATGTGTAGGTTTAGTAAGAGACGAGGCGTTCCTGGAGCCCCTCAGTGCTACGGATCCAGAGCAT
AGCCCTGGATGTCGTTGATTGGAATTGCTCTGGCGACTGTGTGGTGGTATTTTCTAGGTAGCCTG
GCATTGTGCACGGCTACTGTTGCTTTGGCGTGGTGTTGATCACAGCATTACACAGAGTCAGCGTC
GTGATGAGGTATGGATCCACCCTGGTATGCATACGTGGTGATTTCTCTATTCTCCCCGTCGTGCT
GATACGCGTTGTTCATGGCATTGTAATCCACCTGGTGGAATCTTCCGCCACGAGGCGACTTTCCA
TAGTCAGTAGCACTGTCTACTTCCGTAGGTAACCCGATCAACGTGTCCTCCGCAGTGGTACTCGT
TTCACCACGTCTCTTGCTCATCTACACTCCCCACACCTCGCATCG


Right flanking sequence: Indices 163435 -- 163934
CCTCTTGTCTCTCTCTTCACATCTCATCTCTTTGTGCTTCAACGCGGTTCAACCACCAAGCGAGA
AATGCTCGCTACTCACTACCCAAACCCAACCCGTAAAAAAACACACCCACACACCCACACCGCAC
CACTTGGACCGCACCACGTAAACCTCACCACACCCCAACGCCACCCATTCCCCGCCTCTACCTCC
TCTTTGCCACTCGTGGCCAGTTTTTCACCCGCCTGCACACAACCACCAGCTTACGTGATCCAAAA
CTTTTACAACAACAACGCCAGTGCCAACGAACCCACCCCACGGCCACCCGACTATAGATCTCGCT
GCTAAGCACCATGGCCGATCTAATGTACGCGCGCGGTGAATTGAACGATGGCATGAGACGGTGTC
GACGCTGCAAGCGCAAGCGGCTCGACGACGAGCCGGCTGAGGTCCAGCAGTACAAGACCTGTGCC
AAGTGCCGGATTATCGAGCGCAACAAGAAGAACAGTCGCAAGCCG



Found at i:163440 original size:15 final size:15

Alignment explanation


    Indices: 163407--163440  Score: 50
    Period size: 15  Copynumber: 2.3  Consensus size: 15

     163397 CGCCACGTCT

                          *
     163407 TCTTCCCCACGTACT
          1 TCTTCCCCACGTACC

                        *  
     163422 TCTTCCCCACGTCCC
          1 TCTTCCCCACGTACC

                
     163437 TCTT
          1 TCTT

     163441 GTCTCTCTCT


Statistics
Matches: 17,  Mismatches: 2, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  15   17  1.00

ACGTcount: A:0.09, C:0.50, G:0.06, T:0.35


Consensus pattern (15 bp):   
TCTTCCCCACGTACC

Left flanking sequence: Indices 162907 -- 163406
GGTGGTAGCAAGGCACATTGTCGTGGAGTATCTCGTATCGGAGAATTCGGTTTGTGCCATGTGTA
GGTTTAGTAAGAGACGAGGCGTTCCTGGAGCCCCTCAGTGCTACGGATCCAGAGCATAGCCCTGG
ATGTCGTTGATTGGAATTGCTCTGGCGACTGTGTGGTGGTATTTTCTAGGTAGCCTGGCATTGTG
CACGGCTACTGTTGCTTTGGCGTGGTGTTGATCACAGCATTACACAGAGTCAGCGTCGTGATGAG
GTATGGATCCACCCTGGTATGCATACGTGGTGATTTCTCTATTCTCCCCGTCGTGCTGATACGCG
TTGTTCATGGCATTGTAATCCACCTGGTGGAATCTTCCGCCACGAGGCGACTTTCCATAGTCAGT
AGCACTGTCTACTTCCGTAGGTAACCCGATCAACGTGTCCTCCGCAGTGGTACTCGTTTCACCAC
GTCTCTTGCTCATCTACACTCCCCACACCTCGCATCGCCACGTCT


Right flanking sequence: Indices 163441 -- 163940
GTCTCTCTCTTCACATCTCATCTCTTTGTGCTTCAACGCGGTTCAACCACCAAGCGAGAAATGCT
CGCTACTCACTACCCAAACCCAACCCGTAAAAAAACACACCCACACACCCACACCGCACCACTTG
GACCGCACCACGTAAACCTCACCACACCCCAACGCCACCCATTCCCCGCCTCTACCTCCTCTTTG
CCACTCGTGGCCAGTTTTTCACCCGCCTGCACACAACCACCAGCTTACGTGATCCAAAACTTTTA
CAACAACAACGCCAGTGCCAACGAACCCACCCCACGGCCACCCGACTATAGATCTCGCTGCTAAG
CACCATGGCCGATCTAATGTACGCGCGCGGTGAATTGAACGATGGCATGAGACGGTGTCGACGCT
GCAAGCGCAAGCGGCTCGACGACGAGCCGGCTGAGGTCCAGCAGTACAAGACCTGTGCCAAGTGC
CGGATTATCGAGCGCAACAAGAAGAACAGTCGCAAGCCGCTTGCG



Found at i:170145 original size:9 final size:9

Alignment explanation


    Indices: 170131--170155  Score: 50
    Period size: 9  Copynumber: 2.8  Consensus size: 9

     170121 TCAAGCACAG

                     
     170131 AGCCGTGTC
          1 AGCCGTGTC

                     
     170140 AGCCGTGTC
          1 AGCCGTGTC

                   
     170149 AGCCGTG
          1 AGCCGTG

     170156 CGTAGGTGCG


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   9   16  1.00

ACGTcount: A:0.12, C:0.32, G:0.36, T:0.20


Consensus pattern (9 bp):   
AGCCGTGTC

Left flanking sequence: Indices 169631 -- 170130
CTTTGTGCTGTCAATTTAATGTCTCTTCATTACTGCTGCACCCCCTCGTATATCCTATAATGAAG
TACCACCAAACAATGTATTCAAGATGCTTAAAGCGCAAAATCTTCAAGTTGGCAACCAATATTCT
GGCGATATTATATCTACATCACTTTTTTTGAGTGATGTTGAGAGTCGCCGTGCCTGGCGTGTTCC
TTCTATTCCAGCCTTTCGTATGTTCTGAACGCGGTCCGAGTTCTGTATTCGGTCCGATCCGAGAA
TGGGGCTGAATTGCGGTCAGCTGGGCCTGGATGGCTCGTGGGTTGCTAGGAAATGTCTATCACCC
CGCGTAAGCTACACGTGTGACGAGACATGACTATTCCTCGCGTGGCTTAGGCTCTGGTGCCGTCG
TAAGCAGAATGAAGTCAATTGCTAAAAGAAGCGGTTTGAGACATCACTACAAATAGGTCGCGCCA
CCTGATTGAGCTCCGCAACCCAGCGACGCCCGCTTTCAAGCACAG


Right flanking sequence: Indices 170156 -- 170655
CGTAGGTGCGTATTTGAGGCCTCCAACCACGCGCTACAGCCTGGAACCACACAGAAACGACACGA
CAAAGGTCATCATTCGATATAACCACCCAAGTACCACCACAGCCGTACCCAGCGAATTCACACGC
TAATTACAATTTGAACACAAAAAACGGCCCGTTTATGCGATTACTCAGCGGGATCGCACACCACC
GCGGTAGCGAGCCAAGCGAGGCCACGGCAGTGAAACTACGAGGCGCTTGAGCAGTTTTCGTTCCC
TAAATTGGTGTTGCCCAGTATCGGTTCTACCGACGATCCCCCTGTGCGTCTATCTGGCTCAATTG
TCCGTTTCGTGGTCCTTGACAACCATTCGCGCGCCCAAAGGCGAGCTGTCTACAAAGTGTAAACA
AGCCCAAAATAATCCCTACCAAAACTCCACTTGCTATCAATTGCGTTCTATACACACAACCCCAT
ACTCTAACACCATCTATACTCCTTCTCTATCCCCACCACCCCTGC



Found at i:171174 original size:12 final size:12

Alignment explanation


    Indices: 171157--171181  Score: 50
    Period size: 12  Copynumber: 2.1  Consensus size: 12

     171147 GAGCTCAAAT

                        
     171157 CGTCTCCGGAGC
          1 CGTCTCCGGAGC

                        
     171169 CGTCTCCGGAGC
          1 CGTCTCCGGAGC

             
     171181 C
          1 C

     171182 CGAAACCGCC


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   13  1.00

ACGTcount: A:0.08, C:0.44, G:0.32, T:0.16


Consensus pattern (12 bp):   
CGTCTCCGGAGC

Left flanking sequence: Indices 170657 -- 171156
TCCCGTCTCCTTACCTCTTGTCTTCCGTTCCCCCACTCGCGCGACCTCGTGACCAAAAAACCAAC
CGTCTCCAGGAGCCCGACCGACGCCACCGATGAATTTGCTGGACCAATTCACGTCGATCCAGCTT
GAGCGGGATGACCCTGTGGAGCTGCGGCGCCGAGAGCCCGAGGCAGACATTGAGGAGGAACACAG
CGACGTTGCCAGCGACGACCCAGCCGACAGCCCCCTGGACGCGCTGAACGACGTGGACTCTGACG
ACTTGATGATCCCCCAGGGCACAGAGAACAAGGAGGAGAACGTGCTGGGGCCCAAACCCGAGCTG
GCCAAACAGCCACTGCCCTCCCCTGACGAGCATAAGCCTCCTCCCGAGTACTCGGAGGAGCCTCC
GCACCAGGAGGCAGACGAGCCTCCGGCGTTGCCTCGGGCATCCACTGTGGCGGCAGCGACCGCTC
CCAAGTCCAAGGAACCCACAATTGAGCCGTCTCCCGAGCTCAAAT


Right flanking sequence: Indices 171182 -- 171681
CGAAACCGCCCCCGAGCCAGCCAAGCCCCAGATCGACTACACCAAGTATTTTGAGGACTACAAGC
TTGAATCCGAGGTGCTGCTGCCAATCAAGGACATGGATGCCCAGCTGAAGCCGTTCATGAACTAC
CTCATCACCACCAAGACCAACAACCCGCTTGTGTTGAAGCTCAACCGCGTGGATGAGGACAAAGA
GATCGAGTTGTCCACGCGGCGGCGCTACGGCGACTTCCGCTACTTGCACGACCTGTTGTCCAAGG
ACTACCCCACCGTGCTCATCCCGCCGCTTCCCCTGAAGCTGAACCTCAAATATCTCACCGGAGAC
ACGTTTTCGCCCGGGTTTATCCACAAGCGGTTGGAGCTGCTCGACACGTTTGTGCATTTCATCAC
CAACCACCGGGTGTTGTCGCAGTCGCTGGTGTTTCATCTTTTCATTTCTGATTTGCCCGATTGGG
TGACGTTTACGAAGTCGCTAAAGCTCCGCGACGTGGACGACGGGG



Found at i:185287 original size:11 final size:12

Alignment explanation


    Indices: 185256--185289  Score: 61
    Period size: 12  Copynumber: 2.9  Consensus size: 12

     185246 TATATTCAGG

                        
     185256 GTGGTCTGTAGA
          1 GTGGTCTGTAGA

                        
     185268 GTGGTCTGTAGA
          1 GTGGTCTGTAGA

                       
     185280 GT-GTCTGTAG
          1 GTGGTCTGTAG

     185290 GCGTTGGGTT


Statistics
Matches: 22,  Mismatches: 0, Indels: 1
        0.96            0.00        0.04

Matches are distributed among these distances:
  11    8  0.36
  12   14  0.64

ACGTcount: A:0.15, C:0.09, G:0.41, T:0.35


Consensus pattern (12 bp):   
GTGGTCTGTAGA

Left flanking sequence: Indices 184756 -- 185255
ACCTTTTGGTGGACGACTGGCAGTTCATCACCCGCGACCACCAGTTGGTGGAGGTGCCAGCACGT
CGTCCGGTGACCGAGATCCTCGAGGACTACAAAAAGGCTCGCGAGGAGGAAGTGGAGCTCCCGGC
GTTGTTGGGCGAGGTGCTCGAGGGGCTCGAGGCCTACTTCAACAAGGGGTTGCACATGATGTTGT
TGTACAAATACGAAAACCAGCAGTACTTTGAGCTTGTCACCAATGGTACCGTGAGCGATGACGCA
CCTCCGGCCACGGTCTACGGGTTGGAGCACTTGTTGCGGCTCATTGTCACCATGCCTGCTATTTT
GGCGGACTCGCTCTTGGACGCAGTGTCTATGCTGGTGTTGGTGGGGGAGTTGGAGCACTTGTTGG
AGTGGTTGGCTCCCCGGTTGGGCCACTACGCAGGGCGGTATATAAACACAAGTCCGCAATACGAC
GCGTTGTCGCGGCAGTAACGAGTGACGATAATGTATATATTCAGG


Right flanking sequence: Indices 185290 -- 185789
GCGTTGGGTTGATATAGGAATTTGTGATGTGCGCAACCCGAAAACGCGGAAGCTTCGCTAGTGTG
TGGCTGATAGCTGGGATTTTATCGCTTTGGAGTGGGCCCTGTGCTCTGACGCCGTTGGTCTCGTT
GCGTGGGGTTTCCGAATTCCTTCCCGTGGAACTTTTGCAACCGGTACCTTCGCCGGACTTCGGAA
TGCAAATAAACCGGGAGCACTATGAGCGTGCTCTGAAGGAACGAGCGGACTTCCCAAACCAACGC
CTTTTTGTTGGGGAATTCCTCTTTGGGGAAGCTTTTGATTCGTGGGATCTTATCCTTGAGTAGGC
GTTTCAAATCGAAATCAAAGTCGTCCACGTATTGGTAAATGTGGTGGACGAGAAACCTGGTATCG
CTCTCATCCATATACGGGATACTCAAGAGAAAGCTCTCGCAAAAGTTTTTGAACCAGTTGCACCA
TGCTCGGCTGTGGATGTTTTCACAGGTGAACGGGTTGCAATTTAT



Found at i:191136 original size:14 final size:14

Alignment explanation


    Indices: 191102--191142  Score: 57
    Period size: 14  Copynumber: 3.0  Consensus size: 14

     191092 GCCGAAACAA

                          
     191102 TTTTTATCCA-TTT
          1 TTTTTATCCATTTT

              **          
     191115 TTAGTATCCATTTT
          1 TTTTTATCCATTTT

                          
     191129 TTTTTATCCATTTT
          1 TTTTTATCCATTTT

     191143 ATCCATTGCT


Statistics
Matches: 23,  Mismatches: 4, Indels: 1
        0.82            0.14        0.04

Matches are distributed among these distances:
  13    8  0.35
  14   15  0.65

ACGTcount: A:0.17, C:0.15, G:0.02, T:0.66


Consensus pattern (14 bp):   
TTTTTATCCATTTT

Left flanking sequence: Indices 190602 -- 191101
GTATCGCTGTGGACTCGGTTGGGAGGATACGCGAACGGTTGTTGGCAGAAATCCGTAGAACACGC
TACATGGTCGCCTATGACCAATGCCTCAAGGAGCATGCCGTTGCCAATAATCTTTACTTCGAGGT
TCCATATTTGGGTTCGTTCGAAGTGAGGGGCGGTACCGTGGTGATAGGACCGGGGGTGTATTCGA
GCAAATGGATTCCACCGTATGGACCAGACTATTGCACAGGCAATGAGGGTTACTAGAGAGAATTG
AATGGCATTTAACTCTAGTGTCATTTTCAGTGGAGTTCACGAGTGGAAGAAGTTGCTTATGGTGC
AACGCACTGGGATGATGCACTAAACCTTATTGGGAATATGCACTATCTCGTATATCCATGCGTCA
AGTACAACTAGCAGGCCGTCAAGAACACGTCAATATCCTCTGTGGATTGGAGCTCTAAAAATGAG
CTCTATCCAACATGACCGATGGAGCCGCTTTCCAAGCCGAAACAA


Right flanking sequence: Indices 191143 -- 191642
ATCCATTGCTTATTGTCCATTTTATCCAATGCTTTTTATCCATTTTTATTACCCATTATTACTAC
CCTTATTATCCATTGTTTATTAAGTCTACATATGATTCAGGATCTCGCTCAATTATCTCCTAAAC
CGCGCTCATCAGCGTGTCGTGCCACGCCCGGCCTCGTCTCGCCAGCCCCACCTCGTTCGCCAAGG
TGTAAATGACCTCCTTGTTCGACCCGAACCGGAACAGGTCGGCGACGACAGGCCCTCCGCTCTCG
TGGATGGTGTAGATGTCGTCGCGCCCGCGCAACACGTCCTTGAGGGCCCACGACACCACAAACGG
CCCCGCCAGGGTGACGATCCGGCTCTCCTTGGCCCCCAGCCCGGCGTTGAACTGGGCCCGGGTGA
ACTCGACGGGCTTGCGCGTGCGGCGGGCAATCGCCACCGCGTCCGCCAGCCGCAACTGGAGCCGC
CACGGCACGGGCTTCTTGTCGGCGTCGAAGTACTTGGTGAACCCC



Found at i:191142 original size:13 final size:13

Alignment explanation


    Indices: 191102--191142  Score: 55
    Period size: 13  Copynumber: 3.1  Consensus size: 13

     191092 GCCGAAACAA

                         
     191102 TTTTTATCCATTT
          1 TTTTTATCCATTT

              **          
     191115 TTAGTATCCATTTT
          1 TTTTTATCCA-TTT

                         
     191129 TTTTTATCCATTT
          1 TTTTTATCCATTT

             
     191142 T
          1 T

     191143 ATCCATTGCT


Statistics
Matches: 23,  Mismatches: 4, Indels: 2
        0.79            0.14        0.07

Matches are distributed among these distances:
  13   12  0.52
  14   11  0.48

ACGTcount: A:0.17, C:0.15, G:0.02, T:0.66


Consensus pattern (13 bp):   
TTTTTATCCATTT

Left flanking sequence: Indices 190602 -- 191101
GTATCGCTGTGGACTCGGTTGGGAGGATACGCGAACGGTTGTTGGCAGAAATCCGTAGAACACGC
TACATGGTCGCCTATGACCAATGCCTCAAGGAGCATGCCGTTGCCAATAATCTTTACTTCGAGGT
TCCATATTTGGGTTCGTTCGAAGTGAGGGGCGGTACCGTGGTGATAGGACCGGGGGTGTATTCGA
GCAAATGGATTCCACCGTATGGACCAGACTATTGCACAGGCAATGAGGGTTACTAGAGAGAATTG
AATGGCATTTAACTCTAGTGTCATTTTCAGTGGAGTTCACGAGTGGAAGAAGTTGCTTATGGTGC
AACGCACTGGGATGATGCACTAAACCTTATTGGGAATATGCACTATCTCGTATATCCATGCGTCA
AGTACAACTAGCAGGCCGTCAAGAACACGTCAATATCCTCTGTGGATTGGAGCTCTAAAAATGAG
CTCTATCCAACATGACCGATGGAGCCGCTTTCCAAGCCGAAACAA


Right flanking sequence: Indices 191143 -- 191642
ATCCATTGCTTATTGTCCATTTTATCCAATGCTTTTTATCCATTTTTATTACCCATTATTACTAC
CCTTATTATCCATTGTTTATTAAGTCTACATATGATTCAGGATCTCGCTCAATTATCTCCTAAAC
CGCGCTCATCAGCGTGTCGTGCCACGCCCGGCCTCGTCTCGCCAGCCCCACCTCGTTCGCCAAGG
TGTAAATGACCTCCTTGTTCGACCCGAACCGGAACAGGTCGGCGACGACAGGCCCTCCGCTCTCG
TGGATGGTGTAGATGTCGTCGCGCCCGCGCAACACGTCCTTGAGGGCCCACGACACCACAAACGG
CCCCGCCAGGGTGACGATCCGGCTCTCCTTGGCCCCCAGCCCGGCGTTGAACTGGGCCCGGGTGA
ACTCGACGGGCTTGCGCGTGCGGCGGGCAATCGCCACCGCGTCCGCCAGCCGCAACTGGAGCCGC
CACGGCACGGGCTTCTTGTCGGCGTCGAAGTACTTGGTGAACCCC



Found at i:191145 original size:23 final size:23

Alignment explanation


    Indices: 191119--191188  Score: 95
    Period size: 23  Copynumber: 3.0  Consensus size: 23

     191109 CCATTTTTAG

                    **             
     191119 TATCCATTTTTTTTTATCCATTT
          1 TATCCATTGCTTTTTATCCATTT

                        *  *       
     191142 TATCCATTGCTTATTGTCCATTT
          1 TATCCATTGCTTTTTATCCATTT

                  *                
     191165 TATCCAATGCTTTTTATCCATTT
          1 TATCCATTGCTTTTTATCCATTT

             
     191188 T
          1 T

     191189 TATTACCCAT


Statistics
Matches: 40,  Mismatches: 7, Indels: 0
        0.85            0.15        0.00

Matches are distributed among these distances:
  23   40  1.00

ACGTcount: A:0.19, C:0.20, G:0.04, T:0.57


Consensus pattern (23 bp):   
TATCCATTGCTTTTTATCCATTT

Left flanking sequence: Indices 190619 -- 191118
GTTGGGAGGATACGCGAACGGTTGTTGGCAGAAATCCGTAGAACACGCTACATGGTCGCCTATGA
CCAATGCCTCAAGGAGCATGCCGTTGCCAATAATCTTTACTTCGAGGTTCCATATTTGGGTTCGT
TCGAAGTGAGGGGCGGTACCGTGGTGATAGGACCGGGGGTGTATTCGAGCAAATGGATTCCACCG
TATGGACCAGACTATTGCACAGGCAATGAGGGTTACTAGAGAGAATTGAATGGCATTTAACTCTA
GTGTCATTTTCAGTGGAGTTCACGAGTGGAAGAAGTTGCTTATGGTGCAACGCACTGGGATGATG
CACTAAACCTTATTGGGAATATGCACTATCTCGTATATCCATGCGTCAAGTACAACTAGCAGGCC
GTCAAGAACACGTCAATATCCTCTGTGGATTGGAGCTCTAAAAATGAGCTCTATCCAACATGACC
GATGGAGCCGCTTTCCAAGCCGAAACAATTTTTATCCATTTTTAG


Right flanking sequence: Indices 191189 -- 191688
TATTACCCATTATTACTACCCTTATTATCCATTGTTTATTAAGTCTACATATGATTCAGGATCTC
GCTCAATTATCTCCTAAACCGCGCTCATCAGCGTGTCGTGCCACGCCCGGCCTCGTCTCGCCAGC
CCCACCTCGTTCGCCAAGGTGTAAATGACCTCCTTGTTCGACCCGAACCGGAACAGGTCGGCGAC
GACAGGCCCTCCGCTCTCGTGGATGGTGTAGATGTCGTCGCGCCCGCGCAACACGTCCTTGAGGG
CCCACGACACCACAAACGGCCCCGCCAGGGTGACGATCCGGCTCTCCTTGGCCCCCAGCCCGGCG
TTGAACTGGGCCCGGGTGAACTCGACGGGCTTGCGCGTGCGGCGGGCAATCGCCACCGCGTCCGC
CAGCCGCAACTGGAGCCGCCACGGCACGGGCTTCTTGTCGGCGTCGAAGTACTTGGTGAACCCCA
ACGATCCCTCGTTCTTCTGGCCACCCCCGATCTTCAAGTCCATGA



Found at i:192473 original size:15 final size:15

Alignment explanation


    Indices: 192453--192489  Score: 65
    Period size: 15  Copynumber: 2.5  Consensus size: 15

     192443 GAGCGCGGCG

                           
     192453 GTGGTGCGAGAGCCC
          1 GTGGTGCGAGAGCCC

                    *      
     192468 GTGGTGCGGGAGCCC
          1 GTGGTGCGAGAGCCC

                   
     192483 GTGGTGC
          1 GTGGTGC

     192490 CTGCGGGCTT


Statistics
Matches: 21,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  15   21  1.00

ACGTcount: A:0.08, C:0.24, G:0.51, T:0.16


Consensus pattern (15 bp):   
GTGGTGCGAGAGCCC

Left flanking sequence: Indices 191953 -- 192452
TGCGGAAGATCCCGTTGGCGTGGATGCCCGTCATCGTGGGCTCCAGCGTCAACTGGGCGTACTTG
GCGTTGGGCCCGAAGTCGGCGATCGCCGGCGTGCCCACCTGCCACTCGTCCACCACCGTGCCGCG
GTTGACGTCCATCTGGTAGAGCACGTCGTCCTTGGCGCCCTTCATCACGAGGTACTGGTCGCGCT
GGTGCAACACCAGCTTCTGGGGGTCGATCTTGGCGCCCTTCTTGTCGGCGACGTTCTTGAGGGTG
GCCACGTAGTCGACGCCGTCGCCGCCGGTGGAGAACACGCCCACGTTGTTGCCGCGGGTGACGAA
CGCGCGGTCCAGCGCCCCGCCAATCGTGAGCGCGGTGTTCTTGCCCGCCAACCGGTGGAAGTCGC
CCGCGGCCACCCGCGACTCCGGCACGTACTCGTCGTCGGAGTCCGAGTCGTAGGGGTCGTCCGAG
GCGTCCGAGTCCTCCAGGCGGTCCGAGTCCGAGTCGAGCGCGGCG


Right flanking sequence: Indices 192490 -- 192989
CTGCGGGCTTCAAGTCCACCTTCAGCGTCTTCAAGTCCATTTTCAGCTTCTTCAAGTCCGTTTTC
AGCTTGTTCTTCTTCTTCTTCTCCTTCTCCAAGTCCATCTTCAGCATCGCCTTCGCCAAGTACGC
CTCCTCGCTCTGCTCCTCGACGTCCGCACCGTACTTCTTGCGGTTGATCGTCTCCCAGAGCGCCA
TCGTGAACACCAGCTGAAGGGCCGTCAACTGGTCGCGGTCGCCAAACCGCAAGAGCCACGAAAAT
GCCCCCGCCGCCGTCTCGGTGAACACGTACTGGACAAACACAAACAGGAGCTTGTCGTAGTTGAA
GGTGGGCAGGAGCTGCAGCAGCACCGGCAAGTTGAGCGACGCCTCCGCCAGCGTGATGTACAACG
TGTACTCGAACTGCTGGAGGCGGATGAGCCGCACGCGGGCCTGGGCCAGCTTGCGGACGAACTTC
TGGCCACGGGCGTCGTAGTAGTACAACAGCGGCGACGCCGTCTCG



Found at i:192553 original size:21 final size:21

Alignment explanation


    Indices: 192497--192559  Score: 90
    Period size: 21  Copynumber: 3.0  Consensus size: 21

     192487 TGCCTGCGGG

                       **      * 
     192497 CTTCAAGTCCACCTTCAGCGT
          1 CTTCAAGTCCATTTTCAGCTT

                                 
     192518 CTTCAAGTCCATTTTCAGCTT
          1 CTTCAAGTCCATTTTCAGCTT

                      *          
     192539 CTTCAAGTCCGTTTTCAGCTT
          1 CTTCAAGTCCATTTTCAGCTT

     192560 GTTCTTCTTC


Statistics
Matches: 38,  Mismatches: 4, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  21   38  1.00

ACGTcount: A:0.17, C:0.32, G:0.13, T:0.38


Consensus pattern (21 bp):   
CTTCAAGTCCATTTTCAGCTT

Left flanking sequence: Indices 191997 -- 192496
AGCGTCAACTGGGCGTACTTGGCGTTGGGCCCGAAGTCGGCGATCGCCGGCGTGCCCACCTGCCA
CTCGTCCACCACCGTGCCGCGGTTGACGTCCATCTGGTAGAGCACGTCGTCCTTGGCGCCCTTCA
TCACGAGGTACTGGTCGCGCTGGTGCAACACCAGCTTCTGGGGGTCGATCTTGGCGCCCTTCTTG
TCGGCGACGTTCTTGAGGGTGGCCACGTAGTCGACGCCGTCGCCGCCGGTGGAGAACACGCCCAC
GTTGTTGCCGCGGGTGACGAACGCGCGGTCCAGCGCCCCGCCAATCGTGAGCGCGGTGTTCTTGC
CCGCCAACCGGTGGAAGTCGCCCGCGGCCACCCGCGACTCCGGCACGTACTCGTCGTCGGAGTCC
GAGTCGTAGGGGTCGTCCGAGGCGTCCGAGTCCTCCAGGCGGTCCGAGTCCGAGTCGAGCGCGGC
GGTGGTGCGAGAGCCCGTGGTGCGGGAGCCCGTGGTGCCTGCGGG


Right flanking sequence: Indices 192560 -- 193059
GTTCTTCTTCTTCTTCTCCTTCTCCAAGTCCATCTTCAGCATCGCCTTCGCCAAGTACGCCTCCT
CGCTCTGCTCCTCGACGTCCGCACCGTACTTCTTGCGGTTGATCGTCTCCCAGAGCGCCATCGTG
AACACCAGCTGAAGGGCCGTCAACTGGTCGCGGTCGCCAAACCGCAAGAGCCACGAAAATGCCCC
CGCCGCCGTCTCGGTGAACACGTACTGGACAAACACAAACAGGAGCTTGTCGTAGTTGAAGGTGG
GCAGGAGCTGCAGCAGCACCGGCAAGTTGAGCGACGCCTCCGCCAGCGTGATGTACAACGTGTAC
TCGAACTGCTGGAGGCGGATGAGCCGCACGCGGGCCTGGGCCAGCTTGCGGACGAACTTCTGGCC
ACGGGCGTCGTAGTAGTACAACAGCGGCGACGCCGTCTCGAACACCGTGTCGCCGTGGGGCTCCG
CGAACTCCGCGAGCGCCTCTGCGAACTCGTCGTCCGACTCGTCCG



Found at i:193154 original size:36 final size:38

Alignment explanation


    Indices: 193064--193162  Score: 130
    Period size: 39  Copynumber: 2.6  Consensus size: 38

     193054 CGTCCGCGGG

                                             **    
     193064 CGGGCCCTGGATCGGGTTGTACCCGGGATCGCGCTTGCC
          1 CGGGCCCTGGATCGGGTTGTACCCGGGATCGCGAGTG-C

                                                  
     193103 CGGGCCCTGGATCGGGTTGTACCCGGGATC-CGAGTG-
          1 CGGGCCCTGGATCGGGTTGTACCCGGGATCGCGAGTGC

             **       *             
     193139 CTTGCCCTGGGTCGGGTTGTACCC
          1 CGGGCCCTGGATCGGGTTGTACCC

     193163 CGGGTCGTGC


Statistics
Matches: 55,  Mismatches: 5, Indels: 3
        0.87            0.08        0.05

Matches are distributed among these distances:
  36   21  0.38
  38    4  0.07
  39   30  0.55

ACGTcount: A:0.08, C:0.31, G:0.38, T:0.22


Consensus pattern (38 bp):   
CGGGCCCTGGATCGGGTTGTACCCGGGATCGCGAGTGC

Left flanking sequence: Indices 192564 -- 193063
TTCTTCTTCTTCTCCTTCTCCAAGTCCATCTTCAGCATCGCCTTCGCCAAGTACGCCTCCTCGCT
CTGCTCCTCGACGTCCGCACCGTACTTCTTGCGGTTGATCGTCTCCCAGAGCGCCATCGTGAACA
CCAGCTGAAGGGCCGTCAACTGGTCGCGGTCGCCAAACCGCAAGAGCCACGAAAATGCCCCCGCC
GCCGTCTCGGTGAACACGTACTGGACAAACACAAACAGGAGCTTGTCGTAGTTGAAGGTGGGCAG
GAGCTGCAGCAGCACCGGCAAGTTGAGCGACGCCTCCGCCAGCGTGATGTACAACGTGTACTCGA
ACTGCTGGAGGCGGATGAGCCGCACGCGGGCCTGGGCCAGCTTGCGGACGAACTTCTGGCCACGG
GCGTCGTAGTAGTACAACAGCGGCGACGCCGTCTCGAACACCGTGTCGCCGTGGGGCTCCGCGAA
CTCCGCGAGCGCCTCTGCGAACTCGTCGTCCGACTCGTCCGCGGG


Right flanking sequence: Indices 193163 -- 193662
CGGGTCGTGCTTGCTCGGGTTGTACCCCGGGTTGCTACTTCTACCGGTCCCCTCGGGGTTGTAGT
CCGCGTCCTTGTACTGGCCGCCGTAGGGGCGGGTGCCCTGCATAAACTCCTTAAGCCGCGCGTCG
TCCACGCTCTCGATGTCTCCGCTCGGCTTCTCGTACGCCGCCTCGTAGACACACTTGAAGAGCGC
CAACACGAACAGGTCGCTGGAGGCCTCCGCGGCAACTACAAACTCAAAGCGGTCGCCCACGTCGC
CGTTGACGTCGCGCCACGCCACCACCTGGGCGCCCGCGTCGTTGTCGTATACAGAAAACTCTAAC
TCGTCGCTAATCACAAACAGCCACTCGTCGGCGGTGTTGGAGTTGGGCGCGTCCAGCAACAGCGC
CACCGCCAGCTCGCGGTCCAGCTCGTCGTCCAGGTCCTCGTCCACCATGAGCCCGGCGCCCTCGT
CGGCGGTGGTGCCCTTGGTGACGCAGAGCTGGTACAAAAACGGGG



Found at i:193934 original size:15 final size:16

Alignment explanation


    Indices: 193904--193942  Score: 71
    Period size: 15  Copynumber: 2.5  Consensus size: 16

     193894 GATGACGGGA

                            
     193904 CGAAAAGGGAAGGATG
          1 CGAAAAGGGAAGGATG

                            
     193920 CGAAAAGGG-AGGATG
          1 CGAAAAGGGAAGGATG

                    
     193935 CGAAAAGG
          1 CGAAAAGG

     193943 AGACGAAAAG


Statistics
Matches: 23,  Mismatches: 0, Indels: 1
        0.96            0.00        0.04

Matches are distributed among these distances:
  15   14  0.61
  16    9  0.39

ACGTcount: A:0.44, C:0.08, G:0.44, T:0.05


Consensus pattern (16 bp):   
CGAAAAGGGAAGGATG

Left flanking sequence: Indices 193404 -- 193903
AAGCGGTCGCCCACGTCGCCGTTGACGTCGCGCCACGCCACCACCTGGGCGCCCGCGTCGTTGTC
GTATACAGAAAACTCTAACTCGTCGCTAATCACAAACAGCCACTCGTCGGCGGTGTTGGAGTTGG
GCGCGTCCAGCAACAGCGCCACCGCCAGCTCGCGGTCCAGCTCGTCGTCCAGGTCCTCGTCCACC
ATGAGCCCGGCGCCCTCGTCGGCGGTGGTGCCCTTGGTGACGCAGAGCTGGTACAAAAACGGGGT
CAGCGTGGCCTTGATCACGGCGTAGGCGTCGGCGTAGAGGCACTCGAACGCGCCCTTGGGCGAGC
TTGGCGAGCGCGTCAAGAAGAACTTGCCCAGCGGGAGCACCGCGACTTCCTCCTCGGTGGGCGGG
TTGCCGATAAACTTCCTGAGAAAGTTCATATGGGTGGCGTGGTTGTCGTCTAAACAAATGCGTCA
CGTGAGTGTGGTGGCGGAAATGGTGGAAAAATAAGGATGACGGGA


Right flanking sequence: Indices 193943 -- 194442
AGACGAAAAGGGAAGGAGAGGGAAGGAAGCGGAAGGAAGGGAAGGAAGGGGGGGAGGACGGAAGG
GGATGAAAGGAAGGGTAGGAAAGGAAGGGGGTTGACGGAAGCGGAGTGTGTCATTCAGTAGCGCT
ACAGCCCGATTGCCTAGTTTAGCCCACTCACGATGCGTTGGTATGTTAGAGCTAACATGACTACG
GGCGGGGCTTCTAACCGGGACAATTACGACATGCGGGTGAAAGCACAGCGCCTTCGAGACAATTG
GGCTTCTCGGCGAACCAAGGCACACCATGCCTTGTTGTGCCTCTCGTGACGTCTTCGTAGGGCGC
TGTTTGTAATTGGCCCGCGCGCGGCTGTACACCCACGGGTCTCGGGTGGTCTCGGGTGGTCTCCA
CAAACCGCTTTGTGGCATGGCGCACGAGCACCAATTAGGCAATTGGGCTGGCACGACGTCCCCCA
GTGGTAGCTAGCCAAACAGGCGGCGCCGCGTCGGTCGCCACCCAC



Found at i:193966 original size:10 final size:9

Alignment explanation


    Indices: 193950--193992  Score: 68
    Period size: 10  Copynumber: 4.6  Consensus size: 9

     193940 AGGAGACGAA

                     
     193950 AAGGGAAGG
          1 AAGGGAAGG

                      
     193959 AGAGGGAAGG
          1 A-AGGGAAGG

                      
     193969 AAGCGGAAGG
          1 AAG-GGAAGG

                     
     193979 AAGGGAAGG
          1 AAGGGAAGG

                 
     193988 AAGGG
          1 AAGGG

     193993 GGGGAGGACG


Statistics
Matches: 32,  Mismatches: 0, Indels: 4
        0.89            0.00        0.11

Matches are distributed among these distances:
   9   14  0.44
  10   18  0.56

ACGTcount: A:0.42, C:0.02, G:0.56, T:0.00


Consensus pattern (9 bp):   
AAGGGAAGG

Left flanking sequence: Indices 193450 -- 193949
GGGCGCCCGCGTCGTTGTCGTATACAGAAAACTCTAACTCGTCGCTAATCACAAACAGCCACTCG
TCGGCGGTGTTGGAGTTGGGCGCGTCCAGCAACAGCGCCACCGCCAGCTCGCGGTCCAGCTCGTC
GTCCAGGTCCTCGTCCACCATGAGCCCGGCGCCCTCGTCGGCGGTGGTGCCCTTGGTGACGCAGA
GCTGGTACAAAAACGGGGTCAGCGTGGCCTTGATCACGGCGTAGGCGTCGGCGTAGAGGCACTCG
AACGCGCCCTTGGGCGAGCTTGGCGAGCGCGTCAAGAAGAACTTGCCCAGCGGGAGCACCGCGAC
TTCCTCCTCGGTGGGCGGGTTGCCGATAAACTTCCTGAGAAAGTTCATATGGGTGGCGTGGTTGT
CGTCTAAACAAATGCGTCACGTGAGTGTGGTGGCGGAAATGGTGGAAAAATAAGGATGACGGGAC
GAAAAGGGAAGGATGCGAAAAGGGAGGATGCGAAAAGGAGACGAA


Right flanking sequence: Indices 193993 -- 194492
GGGGAGGACGGAAGGGGATGAAAGGAAGGGTAGGAAAGGAAGGGGGTTGACGGAAGCGGAGTGTG
TCATTCAGTAGCGCTACAGCCCGATTGCCTAGTTTAGCCCACTCACGATGCGTTGGTATGTTAGA
GCTAACATGACTACGGGCGGGGCTTCTAACCGGGACAATTACGACATGCGGGTGAAAGCACAGCG
CCTTCGAGACAATTGGGCTTCTCGGCGAACCAAGGCACACCATGCCTTGTTGTGCCTCTCGTGAC
GTCTTCGTAGGGCGCTGTTTGTAATTGGCCCGCGCGCGGCTGTACACCCACGGGTCTCGGGTGGT
CTCGGGTGGTCTCCACAAACCGCTTTGTGGCATGGCGCACGAGCACCAATTAGGCAATTGGGCTG
GCACGACGTCCCCCAGTGGTAGCTAGCCAAACAGGCGGCGCCGCGTCGGTCGCCACCCACGCCCA
CAGCCACCGGGCGCTGGTTTGGTCTAAACGAGCACGAATAATCGC



Found at i:193968 original size:26 final size:26

Alignment explanation


    Indices: 193909--193969  Score: 63
    Period size: 26  Copynumber: 2.3  Consensus size: 26

     193899 CGGGACGAAA

                                      
     193909 AGGGAAGGATGCGAAAAGGGAGGATG
          1 AGGGAAGGATGCGAAAAGGGAGGATG

            * **                        
     193935 CGAAAAGGA-GACGAAAAGGGAAGGA-G
          1 AGGGAAGGATG-CGAAAAGGG-AGGATG

                     
     193961 AGGGAAGGA
          1 AGGGAAGGA

     193970 AGCGGAAGGA


Statistics
Matches: 27,  Mismatches: 6, Indels: 4
        0.73            0.16        0.11

Matches are distributed among these distances:
  25    1  0.04
  26   22  0.81
  27    4  0.15

ACGTcount: A:0.44, C:0.05, G:0.48, T:0.03


Consensus pattern (26 bp):   
AGGGAAGGATGCGAAAAGGGAGGATG

Left flanking sequence: Indices 193409 -- 193908
GTCGCCCACGTCGCCGTTGACGTCGCGCCACGCCACCACCTGGGCGCCCGCGTCGTTGTCGTATA
CAGAAAACTCTAACTCGTCGCTAATCACAAACAGCCACTCGTCGGCGGTGTTGGAGTTGGGCGCG
TCCAGCAACAGCGCCACCGCCAGCTCGCGGTCCAGCTCGTCGTCCAGGTCCTCGTCCACCATGAG
CCCGGCGCCCTCGTCGGCGGTGGTGCCCTTGGTGACGCAGAGCTGGTACAAAAACGGGGTCAGCG
TGGCCTTGATCACGGCGTAGGCGTCGGCGTAGAGGCACTCGAACGCGCCCTTGGGCGAGCTTGGC
GAGCGCGTCAAGAAGAACTTGCCCAGCGGGAGCACCGCGACTTCCTCCTCGGTGGGCGGGTTGCC
GATAAACTTCCTGAGAAAGTTCATATGGGTGGCGTGGTTGTCGTCTAAACAAATGCGTCACGTGA
GTGTGGTGGCGGAAATGGTGGAAAAATAAGGATGACGGGACGAAA


Right flanking sequence: Indices 193970 -- 194469
AGCGGAAGGAAGGGAAGGAAGGGGGGGAGGACGGAAGGGGATGAAAGGAAGGGTAGGAAAGGAAG
GGGGTTGACGGAAGCGGAGTGTGTCATTCAGTAGCGCTACAGCCCGATTGCCTAGTTTAGCCCAC
TCACGATGCGTTGGTATGTTAGAGCTAACATGACTACGGGCGGGGCTTCTAACCGGGACAATTAC
GACATGCGGGTGAAAGCACAGCGCCTTCGAGACAATTGGGCTTCTCGGCGAACCAAGGCACACCA
TGCCTTGTTGTGCCTCTCGTGACGTCTTCGTAGGGCGCTGTTTGTAATTGGCCCGCGCGCGGCTG
TACACCCACGGGTCTCGGGTGGTCTCGGGTGGTCTCCACAAACCGCTTTGTGGCATGGCGCACGA
GCACCAATTAGGCAATTGGGCTGGCACGACGTCCCCCAGTGGTAGCTAGCCAAACAGGCGGCGCC
GCGTCGGTCGCCACCCACGCCCACAGCCACCGGGCGCTGGTTTGG



Found at i:193985 original size:19 final size:20

Alignment explanation


    Indices: 193953--193990  Score: 69
    Period size: 19  Copynumber: 1.9  Consensus size: 20

     193943 AGACGAAAAG

                                
     193953 GGAAGGAGAGGGAAGGAAGC
          1 GGAAGGAGAGGGAAGGAAGC

                               
     193973 GGAAGGA-AGGGAAGGAAG
          1 GGAAGGAGAGGGAAGGAAG

     193991 GGGGGGAGGA


Statistics
Matches: 18,  Mismatches: 0, Indels: 1
        0.95            0.00        0.05

Matches are distributed among these distances:
  19   11  0.61
  20    7  0.39

ACGTcount: A:0.42, C:0.03, G:0.55, T:0.00


Consensus pattern (20 bp):   
GGAAGGAGAGGGAAGGAAGC

Left flanking sequence: Indices 193453 -- 193952
CGCCCGCGTCGTTGTCGTATACAGAAAACTCTAACTCGTCGCTAATCACAAACAGCCACTCGTCG
GCGGTGTTGGAGTTGGGCGCGTCCAGCAACAGCGCCACCGCCAGCTCGCGGTCCAGCTCGTCGTC
CAGGTCCTCGTCCACCATGAGCCCGGCGCCCTCGTCGGCGGTGGTGCCCTTGGTGACGCAGAGCT
GGTACAAAAACGGGGTCAGCGTGGCCTTGATCACGGCGTAGGCGTCGGCGTAGAGGCACTCGAAC
GCGCCCTTGGGCGAGCTTGGCGAGCGCGTCAAGAAGAACTTGCCCAGCGGGAGCACCGCGACTTC
CTCCTCGGTGGGCGGGTTGCCGATAAACTTCCTGAGAAAGTTCATATGGGTGGCGTGGTTGTCGT
CTAAACAAATGCGTCACGTGAGTGTGGTGGCGGAAATGGTGGAAAAATAAGGATGACGGGACGAA
AAGGGAAGGATGCGAAAAGGGAGGATGCGAAAAGGAGACGAAAAG


Right flanking sequence: Indices 193991 -- 194490
GGGGGGAGGACGGAAGGGGATGAAAGGAAGGGTAGGAAAGGAAGGGGGTTGACGGAAGCGGAGTG
TGTCATTCAGTAGCGCTACAGCCCGATTGCCTAGTTTAGCCCACTCACGATGCGTTGGTATGTTA
GAGCTAACATGACTACGGGCGGGGCTTCTAACCGGGACAATTACGACATGCGGGTGAAAGCACAG
CGCCTTCGAGACAATTGGGCTTCTCGGCGAACCAAGGCACACCATGCCTTGTTGTGCCTCTCGTG
ACGTCTTCGTAGGGCGCTGTTTGTAATTGGCCCGCGCGCGGCTGTACACCCACGGGTCTCGGGTG
GTCTCGGGTGGTCTCCACAAACCGCTTTGTGGCATGGCGCACGAGCACCAATTAGGCAATTGGGC
TGGCACGACGTCCCCCAGTGGTAGCTAGCCAAACAGGCGGCGCCGCGTCGGTCGCCACCCACGCC
CACAGCCACCGGGCGCTGGTTTGGTCTAAACGAGCACGAATAATC



Found at i:194019 original size:14 final size:14

Alignment explanation


    Indices: 193975--194037  Score: 60
    Period size: 14  Copynumber: 4.7  Consensus size: 14

     193965 AAGGAAGCGG

                     *    
     193975 AAGGAAGGGAAGG-
          1 AAGGAAGGGGAGGA

                 *        
     193988 AAGG-GGGGGAGG-
          1 AAGGAAGGGGAGGA

             *         *  
     194000 ACGGAAGGGGATGA
          1 AAGGAAGGGGAGGA

                     *    
     194014 AAGGAAGGGTAGGA
          1 AAGGAAGGGGAGGA

                      
     194028 AAGGAAGGGG
          1 AAGGAAGGGG

     194038 GTTGACGGAA


Statistics
Matches: 39,  Mismatches: 9, Indels: 3
        0.76            0.18        0.06

Matches are distributed among these distances:
  12    9  0.23
  13   10  0.26
  14   20  0.51

ACGTcount: A:0.38, C:0.02, G:0.57, T:0.03


Consensus pattern (14 bp):   
AAGGAAGGGGAGGA

Left flanking sequence: Indices 193475 -- 193974
AGAAAACTCTAACTCGTCGCTAATCACAAACAGCCACTCGTCGGCGGTGTTGGAGTTGGGCGCGT
CCAGCAACAGCGCCACCGCCAGCTCGCGGTCCAGCTCGTCGTCCAGGTCCTCGTCCACCATGAGC
CCGGCGCCCTCGTCGGCGGTGGTGCCCTTGGTGACGCAGAGCTGGTACAAAAACGGGGTCAGCGT
GGCCTTGATCACGGCGTAGGCGTCGGCGTAGAGGCACTCGAACGCGCCCTTGGGCGAGCTTGGCG
AGCGCGTCAAGAAGAACTTGCCCAGCGGGAGCACCGCGACTTCCTCCTCGGTGGGCGGGTTGCCG
ATAAACTTCCTGAGAAAGTTCATATGGGTGGCGTGGTTGTCGTCTAAACAAATGCGTCACGTGAG
TGTGGTGGCGGAAATGGTGGAAAAATAAGGATGACGGGACGAAAAGGGAAGGATGCGAAAAGGGA
GGATGCGAAAAGGAGACGAAAAGGGAAGGAGAGGGAAGGAAGCGG


Right flanking sequence: Indices 194038 -- 194537
GTTGACGGAAGCGGAGTGTGTCATTCAGTAGCGCTACAGCCCGATTGCCTAGTTTAGCCCACTCA
CGATGCGTTGGTATGTTAGAGCTAACATGACTACGGGCGGGGCTTCTAACCGGGACAATTACGAC
ATGCGGGTGAAAGCACAGCGCCTTCGAGACAATTGGGCTTCTCGGCGAACCAAGGCACACCATGC
CTTGTTGTGCCTCTCGTGACGTCTTCGTAGGGCGCTGTTTGTAATTGGCCCGCGCGCGGCTGTAC
ACCCACGGGTCTCGGGTGGTCTCGGGTGGTCTCCACAAACCGCTTTGTGGCATGGCGCACGAGCA
CCAATTAGGCAATTGGGCTGGCACGACGTCCCCCAGTGGTAGCTAGCCAAACAGGCGGCGCCGCG
TCGGTCGCCACCCACGCCCACAGCCACCGGGCGCTGGTTTGGTCTAAACGAGCACGAATAATCGC
GGGTGAAAGCGCAATTGGCACGCAAATGGTAACCACTATATTTGC



Found at i:194320 original size:10 final size:10

Alignment explanation


    Indices: 194305--194330  Score: 52
    Period size: 10  Copynumber: 2.6  Consensus size: 10

     194295 TACACCCACG

                      
     194305 GGTCTCGGGT
          1 GGTCTCGGGT

                      
     194315 GGTCTCGGGT
          1 GGTCTCGGGT

                  
     194325 GGTCTC
          1 GGTCTC

     194331 CACAAACCGC


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  10   16  1.00

ACGTcount: A:0.00, C:0.23, G:0.46, T:0.31


Consensus pattern (10 bp):   
GGTCTCGGGT

Left flanking sequence: Indices 193805 -- 194304
CTTCCTGAGAAAGTTCATATGGGTGGCGTGGTTGTCGTCTAAACAAATGCGTCACGTGAGTGTGG
TGGCGGAAATGGTGGAAAAATAAGGATGACGGGACGAAAAGGGAAGGATGCGAAAAGGGAGGATG
CGAAAAGGAGACGAAAAGGGAAGGAGAGGGAAGGAAGCGGAAGGAAGGGAAGGAAGGGGGGGAGG
ACGGAAGGGGATGAAAGGAAGGGTAGGAAAGGAAGGGGGTTGACGGAAGCGGAGTGTGTCATTCA
GTAGCGCTACAGCCCGATTGCCTAGTTTAGCCCACTCACGATGCGTTGGTATGTTAGAGCTAACA
TGACTACGGGCGGGGCTTCTAACCGGGACAATTACGACATGCGGGTGAAAGCACAGCGCCTTCGA
GACAATTGGGCTTCTCGGCGAACCAAGGCACACCATGCCTTGTTGTGCCTCTCGTGACGTCTTCG
TAGGGCGCTGTTTGTAATTGGCCCGCGCGCGGCTGTACACCCACG


Right flanking sequence: Indices 194331 -- 194830
CACAAACCGCTTTGTGGCATGGCGCACGAGCACCAATTAGGCAATTGGGCTGGCACGACGTCCCC
CAGTGGTAGCTAGCCAAACAGGCGGCGCCGCGTCGGTCGCCACCCACGCCCACAGCCACCGGGCG
CTGGTTTGGTCTAAACGAGCACGAATAATCGCGGGTGAAAGCGCAATTGGCACGCAAATGGTAAC
CACTATATTTGCGCGGGAACCCACCATGGTCCCAGCCACGCGGAAGCGCATTGACCATTGTCACG
AGCTGCGTCGGTCAGGGGGCGCAGAATCGCTGGTGGTCGGGGTATCAGTGTGTCTCACACGCGGT
TTCAGGTCCTCCTGTGCGACACGATCCGAAACCCCGCGAATAATGTGTATGCCGGGAAGGCACCG
GGGGTTGTAGCCAGCGTTTACGACGTGGGGGTCCAATGCAAGTGTAGACGCGAACATAGTCAACG
GTGAAACCGTGACAGCGTACAGATGACACGGGGATCTCCGGTGCG



Found at i:194981 original size:9 final size:9

Alignment explanation


    Indices: 194963--195024  Score: 62
    Period size: 9  Copynumber: 7.4  Consensus size: 9

     194953 TTAGTGGTGT

                 *   
     194963 TGGTCATAG
          1 TGGTCTTAG

                     
     194972 TGGTCTTAG
          1 TGGTCTTAG

                     
     194981 TGGTC-TA-
          1 TGGTCTTAG

                *    
     194988 TGGTTTTAG
          1 TGGTCTTAG

              *      
     194997 TGTTC-TA-
          1 TGGTCTTAG

                     
     195004 TGGT-TTAG
          1 TGGTCTTAG

                     
     195012 TGGTCTTAG
          1 TGGTCTTAG

                
     195021 TGGT
          1 TGGT

     195025 GATTAGCCAA


Statistics
Matches: 43,  Mismatches: 5, Indels: 10
        0.74            0.09        0.17

Matches are distributed among these distances:
   7    9  0.21
   8   10  0.23
   9   24  0.56

ACGTcount: A:0.13, C:0.08, G:0.32, T:0.47


Consensus pattern (9 bp):   
TGGTCTTAG

Left flanking sequence: Indices 194463 -- 194962
GGTTTGGTCTAAACGAGCACGAATAATCGCGGGTGAAAGCGCAATTGGCACGCAAATGGTAACCA
CTATATTTGCGCGGGAACCCACCATGGTCCCAGCCACGCGGAAGCGCATTGACCATTGTCACGAG
CTGCGTCGGTCAGGGGGCGCAGAATCGCTGGTGGTCGGGGTATCAGTGTGTCTCACACGCGGTTT
CAGGTCCTCCTGTGCGACACGATCCGAAACCCCGCGAATAATGTGTATGCCGGGAAGGCACCGGG
GGTTGTAGCCAGCGTTTACGACGTGGGGGTCCAATGCAAGTGTAGACGCGAACATAGTCAACGGT
GAAACCGTGACAGCGTACAGATGACACGGGGATCTCCGGTGCGTGTAATCAAGTTGAAACGACGT
GAAAGTTTCAGGGTCTAACGAGGTACGGGAGCTCAATTGGGTAGATAATATATGGAATAGGAAAA
CGGTAGCGATTGGATCTCGATTCAGATGGAGGGGCTTAGTGGTGT


Right flanking sequence: Indices 195025 -- 195524
GATTAGCCAAAATAGGTGTAGCCAGGTAGGTGTTGCAACCGTTGGGTTCAAAATAATGACGTAGC
GAAGTATACGTTCAAATACTGGTGAGCACAGTGTTTCACTGTCTTCCTCTCCTCTGAAACGGCTT
GGTGTTAATGCCACACCCCGTGACCGCCATTTACACCTTACCCACATCCTCTATATTCCTGTTTG
TTCCTTCCCCCGTTTTGAGCCCTTGGGCTTATCATCGCACTGATCGAGATGGGCATCGATAAGAC
TCGAACCCACCCAGACCCATGCTACGGCTGCTACTAGGCCAATTACGGCTAAACAAAACGGCTCC
CAGCACACTTCTGGTCCGTTTCTACACCCCAAAGAACAAAAACGGCGGCACTCCCGCGCCCAAAC
CCTCGCAAAAGCTTCCCAAGTCCGCCCCCACCTGGGCCAAGCGGGATGCGCTGTTGAAAAAGCGG
TATGGCGAGTGGAACCCCACACGGAAGTTGCTGAGGCAGCAGATG



Found at i:194996 original size:16 final size:16

Alignment explanation


    Indices: 194972--195017  Score: 67
    Period size: 16  Copynumber: 2.9  Consensus size: 16

     194962 TTGGTCATAG

                *           
     194972 TGGTCTTAGTGGTCTA
          1 TGGTTTTAGTGGTCTA

                       *    
     194988 TGGTTTTAGTGTTCTA
          1 TGGTTTTAGTGGTCTA

                           
     195004 TGG-TTTAGTGGTCT
          1 TGGTTTTAGTGGTCT

     195018 TAGTGGTGAT


Statistics
Matches: 27,  Mismatches: 3, Indels: 1
        0.87            0.10        0.03

Matches are distributed among these distances:
  15   10  0.37
  16   17  0.63

ACGTcount: A:0.11, C:0.09, G:0.30, T:0.50


Consensus pattern (16 bp):   
TGGTTTTAGTGGTCTA

Left flanking sequence: Indices 194472 -- 194971
TAAACGAGCACGAATAATCGCGGGTGAAAGCGCAATTGGCACGCAAATGGTAACCACTATATTTG
CGCGGGAACCCACCATGGTCCCAGCCACGCGGAAGCGCATTGACCATTGTCACGAGCTGCGTCGG
TCAGGGGGCGCAGAATCGCTGGTGGTCGGGGTATCAGTGTGTCTCACACGCGGTTTCAGGTCCTC
CTGTGCGACACGATCCGAAACCCCGCGAATAATGTGTATGCCGGGAAGGCACCGGGGGTTGTAGC
CAGCGTTTACGACGTGGGGGTCCAATGCAAGTGTAGACGCGAACATAGTCAACGGTGAAACCGTG
ACAGCGTACAGATGACACGGGGATCTCCGGTGCGTGTAATCAAGTTGAAACGACGTGAAAGTTTC
AGGGTCTAACGAGGTACGGGAGCTCAATTGGGTAGATAATATATGGAATAGGAAAACGGTAGCGA
TTGGATCTCGATTCAGATGGAGGGGCTTAGTGGTGTTGGTCATAG


Right flanking sequence: Indices 195018 -- 195517
TAGTGGTGATTAGCCAAAATAGGTGTAGCCAGGTAGGTGTTGCAACCGTTGGGTTCAAAATAATG
ACGTAGCGAAGTATACGTTCAAATACTGGTGAGCACAGTGTTTCACTGTCTTCCTCTCCTCTGAA
ACGGCTTGGTGTTAATGCCACACCCCGTGACCGCCATTTACACCTTACCCACATCCTCTATATTC
CTGTTTGTTCCTTCCCCCGTTTTGAGCCCTTGGGCTTATCATCGCACTGATCGAGATGGGCATCG
ATAAGACTCGAACCCACCCAGACCCATGCTACGGCTGCTACTAGGCCAATTACGGCTAAACAAAA
CGGCTCCCAGCACACTTCTGGTCCGTTTCTACACCCCAAAGAACAAAAACGGCGGCACTCCCGCG
CCCAAACCCTCGCAAAAGCTTCCCAAGTCCGCCCCCACCTGGGCCAAGCGGGATGCGCTGTTGAA
AAAGCGGTATGGCGAGTGGAACCCCACACGGAAGTTGCTGAGGCA



Found at i:196485 original size:11 final size:11

Alignment explanation


    Indices: 196462--196523  Score: 81
    Period size: 11  Copynumber: 5.5  Consensus size: 11

     196452 CACCCGTTTG

                        
     196462 CCTTCCTCTCTA
          1 CCTTCC-CTCTA

                       
     196474 CCTTCCCTCTA
          1 CCTTCCCTCTA

              *        
     196485 CCCTCCCTCTA
          1 CCTTCCCTCTA

              *        
     196496 CCCTCCCTCTA
          1 CCTTCCCTCTA

                        
     196507 TCC-TCCCTCTA
          1 -CCTTCCCTCTA

                  
     196518 CCTTCC
          1 CCTTCC

     196524 TCTCCACCTC


Statistics
Matches: 47,  Mismatches: 1, Indels: 5
        0.89            0.02        0.09

Matches are distributed among these distances:
  10    2  0.04
  11   37  0.79
  12    8  0.17

ACGTcount: A:0.08, C:0.58, G:0.00, T:0.34


Consensus pattern (11 bp):   
CCTTCCCTCTA

Left flanking sequence: Indices 195962 -- 196461
AGAAGAAGGAAGAGGGGAAAAGATGGAGGTGATTTAGGCCAATATTCAAGAAGTTCAAATTTTTT
GGTGGTTGATTTTTGGTGTCTGATAGTTTGTTTAAGTTGTTCGACGGTTTTTAGTTTTTAGTACT
GTTCTCTGCGTGCCTGGCTTAGTAGTCTAGAATGCTTCCTTCGTTTCCCCTGACAACAGAACAAT
CCCTGGCTCGCTTCCAGATACGGGGTGTTCCCCACTTTACAACCCCCCTTACCGGTTGGTGTACT
GCACGGCCAAACCCACCACCCCTTGGGCCAATACGGCAACTAAACCCGATTACAAACACCGTAAG
GGTCACGACACCCTAACGCACGGCAGCCTATGTTTAAGGGGTCGCGTAAGCCCCGTTCGTATCTA
GTTGGCAACCGGGCCACTGTGGTGCTAGCCTCCGCTACGAACAATAGAAAGACTAGACGATCAAT
CGAGATAACATGTGTTATCTCCTTTTCGGAAGACCCACCCGTTTG


Right flanking sequence: Indices 196524 -- 197023
TCTCCACCTCCTCTACTCGCCCTCCCCTCCCATCCTCACTGCCACCCATTACGCTTTTGTGTCGT
GTTCCCCTCGCCTATTTCAAACTGACACAATGGGCCCATGCGATCGGTCGTGTCCCCGATCGCCA
AGGCGTCTCGCCTAACCAGTCCATTGTGTGGCTCGTACGAACCTAATCCGGCCCACCCCTGGCCT
GTTCGCCCACCCCTTCGCTTCTCTCACCCCAACGTGGCCCCAGCGTGCCCCCACCCAGCCCCTTC
TCTCCTCCACCTGCCCCTCCCCTCCTCCTACCGACTCTGGGAACCGGTCACACGACGAGATCGCG
TTTCCAATTACACCGTCTCCGCTTCCACATGCGAAAAACCCACCTGTGCGCAGCCCGACGCATGC
ACCGGGTCCACCTACGTCCACCACCGCCGCCTACGTCCACCCCTCGAGCCCGCCCACCTTACACA
AAACGGTGGCCCAGACACCGAAAAAGAAACTTTTGCCGTCGCCGC



Found at i:196494 original size:22 final size:22

Alignment explanation


    Indices: 196469--196539  Score: 92
    Period size: 22  Copynumber: 3.3  Consensus size: 22

     196459 TTGCCTTCCT

                                  
     196469 CTCTACCTTCCCTCTACCCTCC
          1 CTCTACCTTCCCTCTACCCTCC

                   *        *     
     196491 CTCTACCCTCCCTCTATCCTCC
          1 CTCTACCTTCCCTCTACCCTCC

                           *       
     196513 CTCTACCTT-CCTCTCCACCT-C
          1 CTCTACCTTCCCTCTAC-CCTCC

                  
     196534 CTCTAC
          1 CTCTAC

     196540 TCGCCCTCCC


Statistics
Matches: 43,  Mismatches: 5, Indels: 3
        0.84            0.10        0.06

Matches are distributed among these distances:
  21   12  0.28
  22   31  0.72

ACGTcount: A:0.10, C:0.58, G:0.00, T:0.32


Consensus pattern (22 bp):   
CTCTACCTTCCCTCTACCCTCC

Left flanking sequence: Indices 195969 -- 196468
GGAAGAGGGGAAAAGATGGAGGTGATTTAGGCCAATATTCAAGAAGTTCAAATTTTTTGGTGGTT
GATTTTTGGTGTCTGATAGTTTGTTTAAGTTGTTCGACGGTTTTTAGTTTTTAGTACTGTTCTCT
GCGTGCCTGGCTTAGTAGTCTAGAATGCTTCCTTCGTTTCCCCTGACAACAGAACAATCCCTGGC
TCGCTTCCAGATACGGGGTGTTCCCCACTTTACAACCCCCCTTACCGGTTGGTGTACTGCACGGC
CAAACCCACCACCCCTTGGGCCAATACGGCAACTAAACCCGATTACAAACACCGTAAGGGTCACG
ACACCCTAACGCACGGCAGCCTATGTTTAAGGGGTCGCGTAAGCCCCGTTCGTATCTAGTTGGCA
ACCGGGCCACTGTGGTGCTAGCCTCCGCTACGAACAATAGAAAGACTAGACGATCAATCGAGATA
ACATGTGTTATCTCCTTTTCGGAAGACCCACCCGTTTGCCTTCCT


Right flanking sequence: Indices 196540 -- 197039
TCGCCCTCCCCTCCCATCCTCACTGCCACCCATTACGCTTTTGTGTCGTGTTCCCCTCGCCTATT
TCAAACTGACACAATGGGCCCATGCGATCGGTCGTGTCCCCGATCGCCAAGGCGTCTCGCCTAAC
CAGTCCATTGTGTGGCTCGTACGAACCTAATCCGGCCCACCCCTGGCCTGTTCGCCCACCCCTTC
GCTTCTCTCACCCCAACGTGGCCCCAGCGTGCCCCCACCCAGCCCCTTCTCTCCTCCACCTGCCC
CTCCCCTCCTCCTACCGACTCTGGGAACCGGTCACACGACGAGATCGCGTTTCCAATTACACCGT
CTCCGCTTCCACATGCGAAAAACCCACCTGTGCGCAGCCCGACGCATGCACCGGGTCCACCTACG
TCCACCACCGCCGCCTACGTCCACCCCTCGAGCCCGCCCACCTTACACAAAACGGTGGCCCAGAC
ACCGAAAAAGAAACTTTTGCCGTCGCCGCCGGCCCTCCCCAGCGG



Found at i:196534 original size:33 final size:32

Alignment explanation


    Indices: 196469--196539  Score: 83
    Period size: 33  Copynumber: 2.2  Consensus size: 32

     196459 TTGCCTTCCT

                                     *       
     196469 CTCTACCTTCCCTCTACCCTCCCTCTACCCTCC
          1 CTCTACCTTCCCTCTACCCTCCCTCCACCCT-C

                               *              
     196502 CTCTATCC-TCCCTCTACCTTCCTCTCCA-CCTC
          1 CTCTA-CCTTCCCTCTACCCTCC-CTCCACCCTC

                  
     196534 CTCTAC
          1 CTCTAC

     196540 TCGCCCTCCC


Statistics
Matches: 34,  Mismatches: 2, Indels: 6
        0.81            0.05        0.14

Matches are distributed among these distances:
  31    1  0.03
  32    6  0.18
  33   21  0.62
  34    6  0.18

ACGTcount: A:0.10, C:0.58, G:0.00, T:0.32


Consensus pattern (32 bp):   
CTCTACCTTCCCTCTACCCTCCCTCCACCCTC

Left flanking sequence: Indices 195969 -- 196468
GGAAGAGGGGAAAAGATGGAGGTGATTTAGGCCAATATTCAAGAAGTTCAAATTTTTTGGTGGTT
GATTTTTGGTGTCTGATAGTTTGTTTAAGTTGTTCGACGGTTTTTAGTTTTTAGTACTGTTCTCT
GCGTGCCTGGCTTAGTAGTCTAGAATGCTTCCTTCGTTTCCCCTGACAACAGAACAATCCCTGGC
TCGCTTCCAGATACGGGGTGTTCCCCACTTTACAACCCCCCTTACCGGTTGGTGTACTGCACGGC
CAAACCCACCACCCCTTGGGCCAATACGGCAACTAAACCCGATTACAAACACCGTAAGGGTCACG
ACACCCTAACGCACGGCAGCCTATGTTTAAGGGGTCGCGTAAGCCCCGTTCGTATCTAGTTGGCA
ACCGGGCCACTGTGGTGCTAGCCTCCGCTACGAACAATAGAAAGACTAGACGATCAATCGAGATA
ACATGTGTTATCTCCTTTTCGGAAGACCCACCCGTTTGCCTTCCT


Right flanking sequence: Indices 196540 -- 197039
TCGCCCTCCCCTCCCATCCTCACTGCCACCCATTACGCTTTTGTGTCGTGTTCCCCTCGCCTATT
TCAAACTGACACAATGGGCCCATGCGATCGGTCGTGTCCCCGATCGCCAAGGCGTCTCGCCTAAC
CAGTCCATTGTGTGGCTCGTACGAACCTAATCCGGCCCACCCCTGGCCTGTTCGCCCACCCCTTC
GCTTCTCTCACCCCAACGTGGCCCCAGCGTGCCCCCACCCAGCCCCTTCTCTCCTCCACCTGCCC
CTCCCCTCCTCCTACCGACTCTGGGAACCGGTCACACGACGAGATCGCGTTTCCAATTACACCGT
CTCCGCTTCCACATGCGAAAAACCCACCTGTGCGCAGCCCGACGCATGCACCGGGTCCACCTACG
TCCACCACCGCCGCCTACGTCCACCCCTCGAGCCCGCCCACCTTACACAAAACGGTGGCCCAGAC
ACCGAAAAAGAAACTTTTGCCGTCGCCGCCGGCCCTCCCCAGCGG



Found at i:197794 original size:18 final size:18

Alignment explanation


    Indices: 197771--197827  Score: 87
    Period size: 18  Copynumber: 3.2  Consensus size: 18

     197761 TGGAGGGCTG

                              
     197771 GAGAGACGACGGTCGTGT
          1 GAGAGACGACGGTCGTGT

                             *
     197789 GAGAGACGACGGTCGTGC
          1 GAGAGACGACGGTCGTGT

                  *         * 
     197807 GAGAGAAGACGGTCGTTT
          1 GAGAGACGACGGTCGTGT

               
     197825 GAG
          1 GAG

     197828 CGATTTGAGC


Statistics
Matches: 35,  Mismatches: 4, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  18   35  1.00

ACGTcount: A:0.25, C:0.16, G:0.44, T:0.16


Consensus pattern (18 bp):   
GAGAGACGACGGTCGTGT

Left flanking sequence: Indices 197271 -- 197770
CGCCCAAGCTACCGAGTGTCGAGCAGTTCCGGCTCGACCTGGTGTTGGGCGCGCTCAAGGAGGAG
CTGGCCGACACCGCGGCCGCGGTGCTCAAGGTGACCCACAACTACCAGATGGACTTCCGCCAGGA
GATCAAGCGGCTGCTCACCACGGAGCAGAAGATCCAGCACAAGAACGTCCGGGTGGCCAAGTTGG
CCCGGGCGGTGCTGAAGAAGGTGGCGGCGGCCACGCCCCGGCACGCCGCCACCACGGGGCTCCAC
CAGGAGGTGAACGACTTGCTTACGGCGACGGTGACGGCGAGCGACCGGTTGGCGGCGCTCTTGAC
CCGGGTGGAGGGGGCGCTGGTGGACGGGGCGCGGTACCCGATGGTGGCGCTGCTCTTGCGGCAGC
GGGCGCAGAAGCGCGGCGGTGCCCCCGGCCCCGGGGTGAAGAAGGTGCGATTGGAGGGGGATGGG
AGGGAGGCGGCAGCGAGGGGGAGGGAGGCGGCAGATGGAGGGCTG


Right flanking sequence: Indices 197828 -- 198327
CGATTTGAGCGATCGATGGAGAGTGGAGAGAGTAGGAGGACACACAATGGTCGTGTTTCTGAGAG
CGTGTTGGGCAGCGATAGCCAGGCGACCATCACCCCCGCCAACGCTGACGTGGAGATGGAGGAGA
CAGAGACGTTCAAGGTGCCCGAGGCGCAGGTGGTGAAACCTGGGCAAGAGATGCCCGCGATCCAT
GCCTATACGGACTCACCCCTGTCCCCAAACCAACCCTCTACAGAGCCTTTGACAGAGCCTTCCCA
ACACTCCCAACACTCATCAGACACCTCGCCCGTACACACTCCCTCCTCCCACACACCCACTACCC
CCCACATACCCCACACACCTCACACACCCCACATTCCCTCCTCCCACACTACCTCCCTTTCCTCA
CACACCTCACACACCTCGCACACATCCACACCCACGCCCCGTTCCCCGACACCCCCGCACACACC
CAAGCGGCCCCTCCCTCCGCACCAGCCGGTCGAGGTCGACGAGCC



Found at i:198166 original size:9 final size:9

Alignment explanation


    Indices: 198135--198185  Score: 59
    Period size: 9  Copynumber: 5.7  Consensus size: 9

     198125 ACTCCCTCCT

                     
     198135 CCCACACA-
          1 CCCACACAC

                    * 
     198143 CCCACTACCC
          1 CCCAC-ACAC

                  *  
     198153 CCCACATAC
          1 CCCACACAC

                     
     198162 CCCACACAC
          1 CCCACACAC

             *       
     198171 CTCACACAC
          1 CCCACACAC

                  
     198180 CCCACA
          1 CCCACA

     198186 TTCCCTCCTC


Statistics
Matches: 35,  Mismatches: 6, Indels: 3
        0.80            0.14        0.07

Matches are distributed among these distances:
   8    5  0.14
   9   25  0.71
  10    5  0.14

ACGTcount: A:0.31, C:0.63, G:0.00, T:0.06


Consensus pattern (9 bp):   
CCCACACAC

Left flanking sequence: Indices 197635 -- 198134
GATGGTGGCGCTGCTCTTGCGGCAGCGGGCGCAGAAGCGCGGCGGTGCCCCCGGCCCCGGGGTGA
AGAAGGTGCGATTGGAGGGGGATGGGAGGGAGGCGGCAGCGAGGGGGAGGGAGGCGGCAGATGGA
GGGCTGGAGAGACGACGGTCGTGTGAGAGACGACGGTCGTGCGAGAGAAGACGGTCGTTTGAGCG
ATTTGAGCGATCGATGGAGAGTGGAGAGAGTAGGAGGACACACAATGGTCGTGTTTCTGAGAGCG
TGTTGGGCAGCGATAGCCAGGCGACCATCACCCCCGCCAACGCTGACGTGGAGATGGAGGAGACA
GAGACGTTCAAGGTGCCCGAGGCGCAGGTGGTGAAACCTGGGCAAGAGATGCCCGCGATCCATGC
CTATACGGACTCACCCCTGTCCCCAAACCAACCCTCTACAGAGCCTTTGACAGAGCCTTCCCAAC
ACTCCCAACACTCATCAGACACCTCGCCCGTACACACTCCCTCCT


Right flanking sequence: Indices 198186 -- 198685
TTCCCTCCTCCCACACTACCTCCCTTTCCTCACACACCTCACACACCTCGCACACATCCACACCC
ACGCCCCGTTCCCCGACACCCCCGCACACACCCAAGCGGCCCCTCCCTCCGCACCAGCCGGTCGA
GGTCGACGAGCCCATGTCCCAGCACGAGTTCGAGCAGTTCATGCTGCACAACATCGGGCGCTACC
GCCGCCGCCGCCAGAAGATCGCGTCCCCGGCCCCCCGCCTCAAACAGCACAACCCGCTCCACTTG
TTGTACCTGCTGTTGCTCCTGCACCCCAACTACGTGGACCCGGTGCCCCGGCACAGCCCCGACAA
CCCCTTCGCCGCGGTGGTGCCCGTCAAGGCCGCACCCACCGCCATCCAGCTGTACCAGACACTGC
ACTTCAAGAAGCTCCGGATCAACGGGTCGCCCATCACGCTGGCGACGTTTGTCAAGCAGCAGCCG
CTGCCGTGCGAGTGCCGGGACGTCACCCCGGCCCAGCAGGCGCTC



Found at i:198182 original size:27 final size:27

Alignment explanation


    Indices: 198135--198186  Score: 79
    Period size: 27  Copynumber: 1.9  Consensus size: 27

     198125 ACTCCCTCCT

                            *          
     198135 CCCACACACCCACTACCCCCCACATAC
          1 CCCACACACCCACTACACCCCACATAC

                                      
     198162 CCCACACACCTCAC-ACACCCCACAT
          1 CCCACACACC-CACTACACCCCACAT

     198187 TCCCTCCTCC


Statistics
Matches: 23,  Mismatches: 1, Indels: 2
        0.88            0.04        0.08

Matches are distributed among these distances:
  27   20  0.87
  28    3  0.13

ACGTcount: A:0.31, C:0.62, G:0.00, T:0.08


Consensus pattern (27 bp):   
CCCACACACCCACTACACCCCACATAC

Left flanking sequence: Indices 197635 -- 198134
GATGGTGGCGCTGCTCTTGCGGCAGCGGGCGCAGAAGCGCGGCGGTGCCCCCGGCCCCGGGGTGA
AGAAGGTGCGATTGGAGGGGGATGGGAGGGAGGCGGCAGCGAGGGGGAGGGAGGCGGCAGATGGA
GGGCTGGAGAGACGACGGTCGTGTGAGAGACGACGGTCGTGCGAGAGAAGACGGTCGTTTGAGCG
ATTTGAGCGATCGATGGAGAGTGGAGAGAGTAGGAGGACACACAATGGTCGTGTTTCTGAGAGCG
TGTTGGGCAGCGATAGCCAGGCGACCATCACCCCCGCCAACGCTGACGTGGAGATGGAGGAGACA
GAGACGTTCAAGGTGCCCGAGGCGCAGGTGGTGAAACCTGGGCAAGAGATGCCCGCGATCCATGC
CTATACGGACTCACCCCTGTCCCCAAACCAACCCTCTACAGAGCCTTTGACAGAGCCTTCCCAAC
ACTCCCAACACTCATCAGACACCTCGCCCGTACACACTCCCTCCT


Right flanking sequence: Indices 198187 -- 198686
TCCCTCCTCCCACACTACCTCCCTTTCCTCACACACCTCACACACCTCGCACACATCCACACCCA
CGCCCCGTTCCCCGACACCCCCGCACACACCCAAGCGGCCCCTCCCTCCGCACCAGCCGGTCGAG
GTCGACGAGCCCATGTCCCAGCACGAGTTCGAGCAGTTCATGCTGCACAACATCGGGCGCTACCG
CCGCCGCCGCCAGAAGATCGCGTCCCCGGCCCCCCGCCTCAAACAGCACAACCCGCTCCACTTGT
TGTACCTGCTGTTGCTCCTGCACCCCAACTACGTGGACCCGGTGCCCCGGCACAGCCCCGACAAC
CCCTTCGCCGCGGTGGTGCCCGTCAAGGCCGCACCCACCGCCATCCAGCTGTACCAGACACTGCA
CTTCAAGAAGCTCCGGATCAACGGGTCGCCCATCACGCTGGCGACGTTTGTCAAGCAGCAGCCGC
TGCCGTGCGAGTGCCGGGACGTCACCCCGGCCCAGCAGGCGCTCG



Found at i:199399 original size:10 final size:10

Alignment explanation


    Indices: 199384--199412  Score: 58
    Period size: 10  Copynumber: 2.9  Consensus size: 10

     199374 GTAGTGGGTG

                      
     199384 GGTGTAGAGA
          1 GGTGTAGAGA

                      
     199394 GGTGTAGAGA
          1 GGTGTAGAGA

                     
     199404 GGTGTAGAG
          1 GGTGTAGAG

     199413 TGGGTATGGA


Statistics
Matches: 19,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  10   19  1.00

ACGTcount: A:0.28, C:0.00, G:0.52, T:0.21


Consensus pattern (10 bp):   
GGTGTAGAGA

Left flanking sequence: Indices 198884 -- 199383
GGTAATGGTGGTAATGGTGGTGGTGGTGGCAATGGAAACGGTAATGGAAACGCAAATGGCATCGG
TGGCAATGGATTCGGAAACGGCAATGGCAGTGGCAACGCCAACCACGACCGCTCTGAGCGCGACT
GGCGTGACGAGGCGTTTGCCAAGGACTACTCGCCCACCCCGAAGCACCGCCCGCTGCACCACACC
CTCAAGCCCAAGCGGCTGATTTTGAAGCTGGCGGTGGTGGCCCCGCGCACCAAGGTCGACGTGGC
CAAGTACATGACGCCGCTGGTGCTCTCCGAGTTGAACCTGGCCTACGACAACGAGCTGCGGTCGC
TGGTATTGGCGGTGTCGGTGAGCGGGACGATTTTGCGCGAGGAGTGCGAGGAGGCCGCCAGTGTC
GAGGACGACGTGCGGAGCATCCAGCTGATCCTGAAGCTCAAGGGGTTGTTGGAGGAGCAGTTATG
AGTAATGAATAATGAGTCATGAATGGAGTAGTAGGGTAGTGGGTG


Right flanking sequence: Indices 199413 -- 199912
TGGGTATGGAATAAGTGTCGGGGGGTTTGAATGGGTGTGAGAAAAGTGTTGAGGGTGTGTTATAT
GGGTGTTAGAGCACATAGATCGAAAGAACTGGTGGGTTATTATCGATTGAACCAAAATGGGATAG
ACATGGGACGGTGGGAGTAGACAATCACAGGATGCTCCACGAAAAGAACGAGTTTGTCGGAGTAG
GAATTAAACAATGATGGGTCACCATTGGAATGTGACGTAAAGTGTGACGTATGGCGATGTCTAAC
AATGGCCCAAACACAAGCATTCTCTACGAATCTCCTAGTTCTTATAGACTTTTATTGGCGGTTTA
TGGTGTCTATGGATCGAGCTATGGCTCGTCTATGCCTCGAAGCGGGGTGACGGTGTCAATATGGA
GGTGTGTAGATGGTGTAGATGGCTAGGAGGAGGGTTGAATGGCGATGTTATTGGAAGCAGTGTCA
GGGTGGGTGTAGTAGAGAGTGGAAATAGAAGGGGTGAGGTTAAGG



Found at i:199954 original size:14 final size:14

Alignment explanation


    Indices: 199912--199981  Score: 97
    Period size: 14  Copynumber: 5.1  Consensus size: 14

     199902 TGAGGTTAAG

                          
     199912 GAACAAGAAGTCAA
          1 GAACAAGAAGTCAA

                       *  
     199926 G-ACAAGAAGTGAA
          1 GAACAAGAAGTCAA

                 *     *  
     199939 GAACAGGAAGTTAA
          1 GAACAAGAAGTCAA

                          
     199953 GAACAAGAAGTCAA
          1 GAACAAGAAGTCAA

                   *      
     199967 GAACAAGGAGTCAA
          1 GAACAAGAAGTCAA

             
     199981 G
          1 G

     199982 GAATAGGAGT


Statistics
Matches: 49,  Mismatches: 6, Indels: 2
        0.86            0.11        0.04

Matches are distributed among these distances:
  13   12  0.24
  14   37  0.76

ACGTcount: A:0.53, C:0.11, G:0.27, T:0.09


Consensus pattern (14 bp):   
GAACAAGAAGTCAA

Left flanking sequence: Indices 199412 -- 199911
GTGGGTATGGAATAAGTGTCGGGGGGTTTGAATGGGTGTGAGAAAAGTGTTGAGGGTGTGTTATA
TGGGTGTTAGAGCACATAGATCGAAAGAACTGGTGGGTTATTATCGATTGAACCAAAATGGGATA
GACATGGGACGGTGGGAGTAGACAATCACAGGATGCTCCACGAAAAGAACGAGTTTGTCGGAGTA
GGAATTAAACAATGATGGGTCACCATTGGAATGTGACGTAAAGTGTGACGTATGGCGATGTCTAA
CAATGGCCCAAACACAAGCATTCTCTACGAATCTCCTAGTTCTTATAGACTTTTATTGGCGGTTT
ATGGTGTCTATGGATCGAGCTATGGCTCGTCTATGCCTCGAAGCGGGGTGACGGTGTCAATATGG
AGGTGTGTAGATGGTGTAGATGGCTAGGAGGAGGGTTGAATGGCGATGTTATTGGAAGCAGTGTC
AGGGTGGGTGTAGTAGAGAGTGGAAATAGAAGGGGTGAGGTTAAG


Right flanking sequence: Indices 199982 -- 200481
GAATAGGAGTGATTGAGGAAAGTGAATCAAACATGAACATTCGCGAAAGACTATGACACTCAACC
CGGAGTGTTTTAGAAAAGCCATTCGCTATGTCCCGTGTATGTCCTCTCTTCTTCTTCTTCCTCTC
TGTTCCTCTCCTCTCCTTTTCTCTCCGTTCCTCTTCTCTTCTCCTTTCCTTTCCTCTCCTTTCCT
CTCCTCTTCTCTCCTCCCCTCCCTCTCCTCCCTATCGAATCCACACCCAGAAGAAAAACACCCCC
ACCACAAGCAACACAAGCAACCACATCTTCCAGGTGATCCCCGCCCGCTTGCTCATAATAATCAT
CTGGTTCATCGTGTTCTTCAACTTGACCCGCCCCAGCTCAAACAGGTTGGTGATCTCGTCGTTCA
ACTTGAGCAGCTTGTTGATCTCCAGCCCCATCCGCACCCCGAGGTCCTTGAGCATGCCCACCTTC
TGGCTCATCTCGTCCATTTCCTGGTTGTTGCCCTCCTCCAACGAC



Found at i:200125 original size:5 final size:5

Alignment explanation


    Indices: 200115--200206  Score: 75
    Period size: 5  Copynumber: 19.0  Consensus size: 5

     200105 TCCTCTCTGT

                            *  *                         *       *     *
     200115 TCCTC TCCTC TCCTT TTCTC TCCGT- TCCTC T--TC TCTTC TCCTT TCCTT
          1 TCCTC TCCTC TCCTC TCCTC TCC-TC TCCTC TCCTC TCCTC TCCTC TCCTC

                      *              *          *                
     200163 TCCTC TCCTT TCCTC TCCTC TTCTC TCCTC CCCTC -CCTC TCCTC
          1 TCCTC TCCTC TCCTC TCCTC TCCTC TCCTC TCCTC TCCTC TCCTC

     200207 CCTATCGAAT


Statistics
Matches: 70,  Mismatches: 12, Indels: 10
        0.76            0.13        0.11

Matches are distributed among these distances:
   3    3  0.04
   4    5  0.07
   5   61  0.87
   6    1  0.01

ACGTcount: A:0.00, C:0.52, G:0.01, T:0.47


Consensus pattern (5 bp):   
TCCTC

Left flanking sequence: Indices 199615 -- 200114
ACAATGATGGGTCACCATTGGAATGTGACGTAAAGTGTGACGTATGGCGATGTCTAACAATGGCC
CAAACACAAGCATTCTCTACGAATCTCCTAGTTCTTATAGACTTTTATTGGCGGTTTATGGTGTC
TATGGATCGAGCTATGGCTCGTCTATGCCTCGAAGCGGGGTGACGGTGTCAATATGGAGGTGTGT
AGATGGTGTAGATGGCTAGGAGGAGGGTTGAATGGCGATGTTATTGGAAGCAGTGTCAGGGTGGG
TGTAGTAGAGAGTGGAAATAGAAGGGGTGAGGTTAAGGAACAAGAAGTCAAGACAAGAAGTGAAG
AACAGGAAGTTAAGAACAAGAAGTCAAGAACAAGGAGTCAAGGAATAGGAGTGATTGAGGAAAGT
GAATCAAACATGAACATTCGCGAAAGACTATGACACTCAACCCGGAGTGTTTTAGAAAAGCCATT
CGCTATGTCCCGTGTATGTCCTCTCTTCTTCTTCTTCCTCTCTGT


Right flanking sequence: Indices 200207 -- 200706
CCTATCGAATCCACACCCAGAAGAAAAACACCCCCACCACAAGCAACACAAGCAACCACATCTTC
CAGGTGATCCCCGCCCGCTTGCTCATAATAATCATCTGGTTCATCGTGTTCTTCAACTTGACCCG
CCCCAGCTCAAACAGGTTGGTGATCTCGTCGTTCAACTTGAGCAGCTTGTTGATCTCCAGCCCCA
TCCGCACCCCGAGGTCCTTGAGCATGCCCACCTTCTGGCTCATCTCGTCCATTTCCTGGTTGTTG
CCCTCCTCCAACGACGCCAAGTACGCCTCGTTCTGGCGCGCCAGCTCGGTGGGCACGGCCTCGTA
GGGGGACGCCGTGCGCAGGAGGGGCCTCGGAGTAGCCCCTCCGCTCCCGGAGGAGAAGAGCTGGG
TGCGGAGGTCGCGCTGGTGCGCCTGGCCCGAGTACCGTGACGACATGAGGGACAGCTGGCGAGTC
GCGCGGAAAAGTGAGGCAGAGGAGGTGGAGAGGACAACGGAGGCA



Found at i:200162 original size:33 final size:33

Alignment explanation


    Indices: 200118--200187  Score: 104
    Period size: 33  Copynumber: 2.1  Consensus size: 33

     200108 TCTCTGTTCC

                         *              *    
     200118 TCTCCTCTCCTTTTCTCTCCGTTCCTCTTCTCT
          1 TCTCCTCTCCTTTCCTCTCCGTTCCTCTCCTCT

                  *             *            
     200151 TCTCCTTTCCTTTCCTCTCCTTTCCTCTCCTCT
          1 TCTCCTCTCCTTTCCTCTCCGTTCCTCTCCTCT

                
     200184 TCTC
          1 TCTC

     200188 TCCTCCCCTC


Statistics
Matches: 33,  Mismatches: 4, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  33   33  1.00

ACGTcount: A:0.00, C:0.47, G:0.01, T:0.51


Consensus pattern (33 bp):   
TCTCCTCTCCTTTCCTCTCCGTTCCTCTCCTCT

Left flanking sequence: Indices 199618 -- 200117
ATGATGGGTCACCATTGGAATGTGACGTAAAGTGTGACGTATGGCGATGTCTAACAATGGCCCAA
ACACAAGCATTCTCTACGAATCTCCTAGTTCTTATAGACTTTTATTGGCGGTTTATGGTGTCTAT
GGATCGAGCTATGGCTCGTCTATGCCTCGAAGCGGGGTGACGGTGTCAATATGGAGGTGTGTAGA
TGGTGTAGATGGCTAGGAGGAGGGTTGAATGGCGATGTTATTGGAAGCAGTGTCAGGGTGGGTGT
AGTAGAGAGTGGAAATAGAAGGGGTGAGGTTAAGGAACAAGAAGTCAAGACAAGAAGTGAAGAAC
AGGAAGTTAAGAACAAGAAGTCAAGAACAAGGAGTCAAGGAATAGGAGTGATTGAGGAAAGTGAA
TCAAACATGAACATTCGCGAAAGACTATGACACTCAACCCGGAGTGTTTTAGAAAAGCCATTCGC
TATGTCCCGTGTATGTCCTCTCTTCTTCTTCTTCCTCTCTGTTCC


Right flanking sequence: Indices 200188 -- 200687
TCCTCCCCTCCCTCTCCTCCCTATCGAATCCACACCCAGAAGAAAAACACCCCCACCACAAGCAA
CACAAGCAACCACATCTTCCAGGTGATCCCCGCCCGCTTGCTCATAATAATCATCTGGTTCATCG
TGTTCTTCAACTTGACCCGCCCCAGCTCAAACAGGTTGGTGATCTCGTCGTTCAACTTGAGCAGC
TTGTTGATCTCCAGCCCCATCCGCACCCCGAGGTCCTTGAGCATGCCCACCTTCTGGCTCATCTC
GTCCATTTCCTGGTTGTTGCCCTCCTCCAACGACGCCAAGTACGCCTCGTTCTGGCGCGCCAGCT
CGGTGGGCACGGCCTCGTAGGGGGACGCCGTGCGCAGGAGGGGCCTCGGAGTAGCCCCTCCGCTC
CCGGAGGAGAAGAGCTGGGTGCGGAGGTCGCGCTGGTGCGCCTGGCCCGAGTACCGTGACGACAT
GAGGGACAGCTGGCGAGTCGCGCGGAAAAGTGAGGCAGAGGAGGT



Found at i:200881 original size:10 final size:10

Alignment explanation


    Indices: 200866--200897  Score: 55
    Period size: 10  Copynumber: 3.2  Consensus size: 10

     200856 GAGGCCAGTG

                      
     200866 AGTGTGAGAA
          1 AGTGTGAGAA

                    * 
     200876 AGTGTGAGGA
          1 AGTGTGAGAA

                      
     200886 AGTGTGAGAA
          1 AGTGTGAGAA

              
     200896 AG
          1 AG

     200898 AGTACACTAA


Statistics
Matches: 20,  Mismatches: 2, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  10   20  1.00

ACGTcount: A:0.38, C:0.00, G:0.44, T:0.19


Consensus pattern (10 bp):   
AGTGTGAGAA

Left flanking sequence: Indices 200366 -- 200865
CGTTCAACTTGAGCAGCTTGTTGATCTCCAGCCCCATCCGCACCCCGAGGTCCTTGAGCATGCCC
ACCTTCTGGCTCATCTCGTCCATTTCCTGGTTGTTGCCCTCCTCCAACGACGCCAAGTACGCCTC
GTTCTGGCGCGCCAGCTCGGTGGGCACGGCCTCGTAGGGGGACGCCGTGCGCAGGAGGGGCCTCG
GAGTAGCCCCTCCGCTCCCGGAGGAGAAGAGCTGGGTGCGGAGGTCGCGCTGGTGCGCCTGGCCC
GAGTACCGTGACGACATGAGGGACAGCTGGCGAGTCGCGCGGAAAAGTGAGGCAGAGGAGGTGGA
GAGGACAACGGAGGCACGCGGGGAAAACGAGAGGAGTACGGAGGAAGCCAGCAGGAAAGGAGAGA
ATGGGTAGAGGGGTAGTGAGGTTGCTACGAGGTAGTGTGGCAGCCCCCGACCAGCTGATATGCAC
TGGCAGGCACGGCTGACGTGAACTAAGCGGTTGGAGAGGCCAGTG


Right flanking sequence: Indices 200898 -- 201397
AGTACACTAAGAAGAGTAATCTAAGAAAAGTACTCTAAGAAGAGTACCTTAATATGACGTAATAA
ACACACGATAGCTCCTGGGGCTTGGCTGGGCAACCACAACGGCCACGTCGCTTGCCCTTTTGGGT
AGCATGTCCGGTGGGCCGATATTTCCTGTAGCCGACGGTTGTTTTGGGCAATTGGCGCCATATGA
GTACCCGTGGTAACCGTCTGGGGTAGCCCCTGAACCAAAATGGGTAAGATATGCCTGGATTCGAA
GGATGAATAGAGTAATTACCCAACAATGACATACAACAGAACCCTCAACAACAGAATCTTCAACA
ACAGAACCCTGGTGGCCCTAATGGCTCGATGGCTCTGAAAGTCTACCGTACCGTAGTCTACTATA
GTCTACACTTACCTTTCTCTTTTCTTCCCGTTCCACCAATCCTACGTACCCCCACCTTCCCCTGC
CACTTCCCCACCCTTCCACTCTTCCCACCCTTTCTACACCCTTTC



Found at i:200914 original size:14 final size:14

Alignment explanation


    Indices: 200895--200944  Score: 66
    Period size: 14  Copynumber: 3.6  Consensus size: 14

     200885 AAGTGTGAGA

                          
     200895 AAGAGTACACTAAG
          1 AAGAGTACACTAAG

                           
     200909 AAGAGTA-ATCTAAG
          1 AAGAGTACA-CTAAG

              *     *     
     200923 AAAAGTACTCTAAG
          1 AAGAGTACACTAAG

                    
     200937 AAGAGTAC
          1 AAGAGTAC

     200945 CTTAATATGA


Statistics
Matches: 31,  Mismatches: 3, Indels: 4
        0.82            0.08        0.11

Matches are distributed among these distances:
  13    1  0.03
  14   30  0.97

ACGTcount: A:0.50, C:0.12, G:0.20, T:0.18


Consensus pattern (14 bp):   
AAGAGTACACTAAG

Left flanking sequence: Indices 200395 -- 200894
AGCCCCATCCGCACCCCGAGGTCCTTGAGCATGCCCACCTTCTGGCTCATCTCGTCCATTTCCTG
GTTGTTGCCCTCCTCCAACGACGCCAAGTACGCCTCGTTCTGGCGCGCCAGCTCGGTGGGCACGG
CCTCGTAGGGGGACGCCGTGCGCAGGAGGGGCCTCGGAGTAGCCCCTCCGCTCCCGGAGGAGAAG
AGCTGGGTGCGGAGGTCGCGCTGGTGCGCCTGGCCCGAGTACCGTGACGACATGAGGGACAGCTG
GCGAGTCGCGCGGAAAAGTGAGGCAGAGGAGGTGGAGAGGACAACGGAGGCACGCGGGGAAAACG
AGAGGAGTACGGAGGAAGCCAGCAGGAAAGGAGAGAATGGGTAGAGGGGTAGTGAGGTTGCTACG
AGGTAGTGTGGCAGCCCCCGACCAGCTGATATGCACTGGCAGGCACGGCTGACGTGAACTAAGCG
GTTGGAGAGGCCAGTGAGTGTGAGAAAGTGTGAGGAAGTGTGAGA


Right flanking sequence: Indices 200945 -- 201444
CTTAATATGACGTAATAAACACACGATAGCTCCTGGGGCTTGGCTGGGCAACCACAACGGCCACG
TCGCTTGCCCTTTTGGGTAGCATGTCCGGTGGGCCGATATTTCCTGTAGCCGACGGTTGTTTTGG
GCAATTGGCGCCATATGAGTACCCGTGGTAACCGTCTGGGGTAGCCCCTGAACCAAAATGGGTAA
GATATGCCTGGATTCGAAGGATGAATAGAGTAATTACCCAACAATGACATACAACAGAACCCTCA
ACAACAGAATCTTCAACAACAGAACCCTGGTGGCCCTAATGGCTCGATGGCTCTGAAAGTCTACC
GTACCGTAGTCTACTATAGTCTACACTTACCTTTCTCTTTTCTTCCCGTTCCACCAATCCTACGT
ACCCCCACCTTCCCCTGCCACTTCCCCACCCTTCCACTCTTCCCACCCTTTCTACACCCTTTCCA
CACCCTCCCACACCCTACCACCCTTCCCACTTTGTTCCACCCATC



Found at i:201210 original size:15 final size:15

Alignment explanation


    Indices: 201190--201232  Score: 68
    Period size: 15  Copynumber: 2.9  Consensus size: 15

     201180 ACAATGACAT

                           
     201190 ACAACAGAACCCTCA
          1 ACAACAGAACCCTCA

                     * *   
     201205 ACAACAGAATCTTCA
          1 ACAACAGAACCCTCA

                         
     201220 ACAACAGAACCCT
          1 ACAACAGAACCCT

     201233 GGTGGCCCTA


Statistics
Matches: 24,  Mismatches: 4, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
  15   24  1.00

ACGTcount: A:0.47, C:0.35, G:0.07, T:0.12


Consensus pattern (15 bp):   
ACAACAGAACCCTCA

Left flanking sequence: Indices 200690 -- 201189
AGAGGACAACGGAGGCACGCGGGGAAAACGAGAGGAGTACGGAGGAAGCCAGCAGGAAAGGAGAG
AATGGGTAGAGGGGTAGTGAGGTTGCTACGAGGTAGTGTGGCAGCCCCCGACCAGCTGATATGCA
CTGGCAGGCACGGCTGACGTGAACTAAGCGGTTGGAGAGGCCAGTGAGTGTGAGAAAGTGTGAGG
AAGTGTGAGAAAGAGTACACTAAGAAGAGTAATCTAAGAAAAGTACTCTAAGAAGAGTACCTTAA
TATGACGTAATAAACACACGATAGCTCCTGGGGCTTGGCTGGGCAACCACAACGGCCACGTCGCT
TGCCCTTTTGGGTAGCATGTCCGGTGGGCCGATATTTCCTGTAGCCGACGGTTGTTTTGGGCAAT
TGGCGCCATATGAGTACCCGTGGTAACCGTCTGGGGTAGCCCCTGAACCAAAATGGGTAAGATAT
GCCTGGATTCGAAGGATGAATAGAGTAATTACCCAACAATGACAT


Right flanking sequence: Indices 201233 -- 201732
GGTGGCCCTAATGGCTCGATGGCTCTGAAAGTCTACCGTACCGTAGTCTACTATAGTCTACACTT
ACCTTTCTCTTTTCTTCCCGTTCCACCAATCCTACGTACCCCCACCTTCCCCTGCCACTTCCCCA
CCCTTCCACTCTTCCCACCCTTTCTACACCCTTTCCACACCCTCCCACACCCTACCACCCTTCCC
ACTTTGTTCCACCCATCCCACACCCCCCATCCTCGCTCATTCCCGATTAGTTTCGGCTGCAAAGC
TTAACTTTAGATGGCGGGGCTGAGACACGGCAGCGAACGATAGGCGTGGGGTAAATACGAGCCAC
CCCAGCACCTACCCGGAAAAACACCCCACATTGCTGCCCCATTGTTGCCCCATTGTTGGCCCACC
CCGTCCCCGCTCTCCACGCCCACCCGTGATCCCCGTGATCTCCCCGTGATCGCCTCGTGATCTCC
TCTACATGGCTGGCACTTCCGTTTTAAGCGAAAAATACCGGACCC



Found at i:201371 original size:16 final size:17

Alignment explanation


    Indices: 201347--201384  Score: 51
    Period size: 17  Copynumber: 2.3  Consensus size: 17

     201337 CCCCACCTTC

                *            
     201347 CCCTGCCACT-TCCCCA
          1 CCCTTCCACTCTCCCCA

                        *    
     201363 CCCTTCCACTCTTCCCA
          1 CCCTTCCACTCTCCCCA

                 
     201380 CCCTT
          1 CCCTT

     201385 TCTACACCCT


Statistics
Matches: 19,  Mismatches: 2, Indels: 1
        0.86            0.09        0.05

Matches are distributed among these distances:
  16    9  0.47
  17   10  0.53

ACGTcount: A:0.11, C:0.61, G:0.03, T:0.26


Consensus pattern (17 bp):   
CCCTTCCACTCTCCCCA

Left flanking sequence: Indices 200847 -- 201346
GCGGTTGGAGAGGCCAGTGAGTGTGAGAAAGTGTGAGGAAGTGTGAGAAAGAGTACACTAAGAAG
AGTAATCTAAGAAAAGTACTCTAAGAAGAGTACCTTAATATGACGTAATAAACACACGATAGCTC
CTGGGGCTTGGCTGGGCAACCACAACGGCCACGTCGCTTGCCCTTTTGGGTAGCATGTCCGGTGG
GCCGATATTTCCTGTAGCCGACGGTTGTTTTGGGCAATTGGCGCCATATGAGTACCCGTGGTAAC
CGTCTGGGGTAGCCCCTGAACCAAAATGGGTAAGATATGCCTGGATTCGAAGGATGAATAGAGTA
ATTACCCAACAATGACATACAACAGAACCCTCAACAACAGAATCTTCAACAACAGAACCCTGGTG
GCCCTAATGGCTCGATGGCTCTGAAAGTCTACCGTACCGTAGTCTACTATAGTCTACACTTACCT
TTCTCTTTTCTTCCCGTTCCACCAATCCTACGTACCCCCACCTTC


Right flanking sequence: Indices 201385 -- 201884
TCTACACCCTTTCCACACCCTCCCACACCCTACCACCCTTCCCACTTTGTTCCACCCATCCCACA
CCCCCCATCCTCGCTCATTCCCGATTAGTTTCGGCTGCAAAGCTTAACTTTAGATGGCGGGGCTG
AGACACGGCAGCGAACGATAGGCGTGGGGTAAATACGAGCCACCCCAGCACCTACCCGGAAAAAC
ACCCCACATTGCTGCCCCATTGTTGCCCCATTGTTGGCCCACCCCGTCCCCGCTCTCCACGCCCA
CCCGTGATCCCCGTGATCTCCCCGTGATCGCCTCGTGATCTCCTCTACATGGCTGGCACTTCCGT
TTTAAGCGAAAAATACCGGACCCCAACCACTCAGAAACAGAAAAAGAAACCACAGCGGCGCCCGC
AGCGTGAACCCACACCACCCACTGCGTTTTCCCTGCGTTTTTTCCACCCGCTACCCCCTCGTTGT
CCACCCCTGTGGTCTCGCCTACGCGTCCTACATTCCCGATTGGCG



Found at i:201394 original size:11 final size:11

Alignment explanation


    Indices: 201374--201415  Score: 52
    Period size: 11  Copynumber: 4.0  Consensus size: 11

     201364 CCTTCCACTC

                       
     201374 TTCC-CACCCT
          1 TTCCACACCCT

               *       
     201384 TTCTACACCCT
          1 TTCCACACCCT

                       
     201395 TTCCACACCC-
          1 TTCCACACCCT

             *         
     201405 TCCCACACCCT
          1 TTCCACACCCT

     201416 ACCACCCTTC


Statistics
Matches: 27,  Mismatches: 3, Indels: 3
        0.82            0.09        0.09

Matches are distributed among these distances:
  10   12  0.44
  11   15  0.56

ACGTcount: A:0.17, C:0.57, G:0.00, T:0.26


Consensus pattern (11 bp):   
TTCCACACCCT

Left flanking sequence: Indices 200874 -- 201373
AAAGTGTGAGGAAGTGTGAGAAAGAGTACACTAAGAAGAGTAATCTAAGAAAAGTACTCTAAGAA
GAGTACCTTAATATGACGTAATAAACACACGATAGCTCCTGGGGCTTGGCTGGGCAACCACAACG
GCCACGTCGCTTGCCCTTTTGGGTAGCATGTCCGGTGGGCCGATATTTCCTGTAGCCGACGGTTG
TTTTGGGCAATTGGCGCCATATGAGTACCCGTGGTAACCGTCTGGGGTAGCCCCTGAACCAAAAT
GGGTAAGATATGCCTGGATTCGAAGGATGAATAGAGTAATTACCCAACAATGACATACAACAGAA
CCCTCAACAACAGAATCTTCAACAACAGAACCCTGGTGGCCCTAATGGCTCGATGGCTCTGAAAG
TCTACCGTACCGTAGTCTACTATAGTCTACACTTACCTTTCTCTTTTCTTCCCGTTCCACCAATC
CTACGTACCCCCACCTTCCCCTGCCACTTCCCCACCCTTCCACTC


Right flanking sequence: Indices 201416 -- 201915
ACCACCCTTCCCACTTTGTTCCACCCATCCCACACCCCCCATCCTCGCTCATTCCCGATTAGTTT
CGGCTGCAAAGCTTAACTTTAGATGGCGGGGCTGAGACACGGCAGCGAACGATAGGCGTGGGGTA
AATACGAGCCACCCCAGCACCTACCCGGAAAAACACCCCACATTGCTGCCCCATTGTTGCCCCAT
TGTTGGCCCACCCCGTCCCCGCTCTCCACGCCCACCCGTGATCCCCGTGATCTCCCCGTGATCGC
CTCGTGATCTCCTCTACATGGCTGGCACTTCCGTTTTAAGCGAAAAATACCGGACCCCAACCACT
CAGAAACAGAAAAAGAAACCACAGCGGCGCCCGCAGCGTGAACCCACACCACCCACTGCGTTTTC
CCTGCGTTTTTTCCACCCGCTACCCCCTCGTTGTCCACCCCTGTGGTCTCGCCTACGCGTCCTAC
ATTCCCGATTGGCGCGCGTGCAACGATCAATTTGTGACCGCACCT



Found at i:201606 original size:11 final size:11

Alignment explanation


    Indices: 201586--201620  Score: 52
    Period size: 11  Copynumber: 3.2  Consensus size: 11

     201576 AAACACCCCA

                 *     
     201586 CATTGCTGCCC
          1 CATTGTTGCCC

                       
     201597 CATTGTTGCCC
          1 CATTGTTGCCC

                    *  
     201608 CATTGTTGGCC
          1 CATTGTTGCCC

              
     201619 CA
          1 CA

     201621 CCCCGTCCCC


Statistics
Matches: 22,  Mismatches: 2, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
  11   22  1.00

ACGTcount: A:0.11, C:0.37, G:0.20, T:0.31


Consensus pattern (11 bp):   
CATTGTTGCCC

Left flanking sequence: Indices 201086 -- 201585
CATATGAGTACCCGTGGTAACCGTCTGGGGTAGCCCCTGAACCAAAATGGGTAAGATATGCCTGG
ATTCGAAGGATGAATAGAGTAATTACCCAACAATGACATACAACAGAACCCTCAACAACAGAATC
TTCAACAACAGAACCCTGGTGGCCCTAATGGCTCGATGGCTCTGAAAGTCTACCGTACCGTAGTC
TACTATAGTCTACACTTACCTTTCTCTTTTCTTCCCGTTCCACCAATCCTACGTACCCCCACCTT
CCCCTGCCACTTCCCCACCCTTCCACTCTTCCCACCCTTTCTACACCCTTTCCACACCCTCCCAC
ACCCTACCACCCTTCCCACTTTGTTCCACCCATCCCACACCCCCCATCCTCGCTCATTCCCGATT
AGTTTCGGCTGCAAAGCTTAACTTTAGATGGCGGGGCTGAGACACGGCAGCGAACGATAGGCGTG
GGGTAAATACGAGCCACCCCAGCACCTACCCGGAAAAACACCCCA


Right flanking sequence: Indices 201621 -- 202120
CCCCGTCCCCGCTCTCCACGCCCACCCGTGATCCCCGTGATCTCCCCGTGATCGCCTCGTGATCT
CCTCTACATGGCTGGCACTTCCGTTTTAAGCGAAAAATACCGGACCCCAACCACTCAGAAACAGA
AAAAGAAACCACAGCGGCGCCCGCAGCGTGAACCCACACCACCCACTGCGTTTTCCCTGCGTTTT
TTCCACCCGCTACCCCCTCGTTGTCCACCCCTGTGGTCTCGCCTACGCGTCCTACATTCCCGATT
GGCGCGCGTGCAACGATCAATTTGTGACCGCACCTCACCTCACCTTCGCACCCTGCTCCACCACC
CCTCACCGCACCGCACCGCACCCACTGTTTGGCGACCGGATGGCGAGTGAGAAAAAGCTTCGAAG
CATGTTTCCCCCCGGGGTAGCGATAAAGGACTTTGGCTACCCCCCGCTGCATGCCCTCCACACCG
GCCCGTCGCGACTATGTTACGACGGCGACACCGTCCACGACGACC



Found at i:201670 original size:20 final size:22

Alignment explanation


    Indices: 201645--201687  Score: 72
    Period size: 22  Copynumber: 2.0  Consensus size: 22

     201635 TCCACGCCCA

                                  
     201645 CCCGTGATC-CC-CGTGATCTC
          1 CCCGTGATCGCCTCGTGATCTC

                                  
     201665 CCCGTGATCGCCTCGTGATCTC
          1 CCCGTGATCGCCTCGTGATCTC

             
     201687 C
          1 C

     201688 TCTACATGGC


Statistics
Matches: 21,  Mismatches: 0, Indels: 2
        0.91            0.00        0.09

Matches are distributed among these distances:
  20    9  0.43
  21    2  0.10
  22   10  0.48

ACGTcount: A:0.09, C:0.44, G:0.21, T:0.26


Consensus pattern (22 bp):   
CCCGTGATCGCCTCGTGATCTC

Left flanking sequence: Indices 201145 -- 201644
GCCTGGATTCGAAGGATGAATAGAGTAATTACCCAACAATGACATACAACAGAACCCTCAACAAC
AGAATCTTCAACAACAGAACCCTGGTGGCCCTAATGGCTCGATGGCTCTGAAAGTCTACCGTACC
GTAGTCTACTATAGTCTACACTTACCTTTCTCTTTTCTTCCCGTTCCACCAATCCTACGTACCCC
CACCTTCCCCTGCCACTTCCCCACCCTTCCACTCTTCCCACCCTTTCTACACCCTTTCCACACCC
TCCCACACCCTACCACCCTTCCCACTTTGTTCCACCCATCCCACACCCCCCATCCTCGCTCATTC
CCGATTAGTTTCGGCTGCAAAGCTTAACTTTAGATGGCGGGGCTGAGACACGGCAGCGAACGATA
GGCGTGGGGTAAATACGAGCCACCCCAGCACCTACCCGGAAAAACACCCCACATTGCTGCCCCAT
TGTTGCCCCATTGTTGGCCCACCCCGTCCCCGCTCTCCACGCCCA


Right flanking sequence: Indices 201688 -- 202187
TCTACATGGCTGGCACTTCCGTTTTAAGCGAAAAATACCGGACCCCAACCACTCAGAAACAGAAA
AAGAAACCACAGCGGCGCCCGCAGCGTGAACCCACACCACCCACTGCGTTTTCCCTGCGTTTTTT
CCACCCGCTACCCCCTCGTTGTCCACCCCTGTGGTCTCGCCTACGCGTCCTACATTCCCGATTGG
CGCGCGTGCAACGATCAATTTGTGACCGCACCTCACCTCACCTTCGCACCCTGCTCCACCACCCC
TCACCGCACCGCACCGCACCCACTGTTTGGCGACCGGATGGCGAGTGAGAAAAAGCTTCGAAGCA
TGTTTCCCCCCGGGGTAGCGATAAAGGACTTTGGCTACCCCCCGCTGCATGCCCTCCACACCGGC
CCGTCGCGACTATGTTACGACGGCGACACCGTCCACGACGACCCGCTGGGGTCCGACTCCGACTC
CGACGCCGCCCCCGGAGACCCCGTGCACACCGCACAACCCGCACT



Found at i:201689 original size:11 final size:11

Alignment explanation


    Indices: 201647--201689  Score: 54
    Period size: 11  Copynumber: 4.1  Consensus size: 11

     201637 CACGCCCACC

                       
     201647 CGTGATC-CC-
          1 CGTGATCTCCT

                      *
     201656 CGTGATCTCCC
          1 CGTGATCTCCT

                   *   
     201667 CGTGATCGCCT
          1 CGTGATCTCCT

                       
     201678 CGTGATCTCCT
          1 CGTGATCTCCT

             
     201689 C
          1 C

     201690 TACATGGCTG


Statistics
Matches: 29,  Mismatches: 3, Indels: 2
        0.85            0.09        0.06

Matches are distributed among these distances:
   9    7  0.24
  10    2  0.07
  11   20  0.69

ACGTcount: A:0.09, C:0.42, G:0.21, T:0.28


Consensus pattern (11 bp):   
CGTGATCTCCT

Left flanking sequence: Indices 201147 -- 201646
CTGGATTCGAAGGATGAATAGAGTAATTACCCAACAATGACATACAACAGAACCCTCAACAACAG
AATCTTCAACAACAGAACCCTGGTGGCCCTAATGGCTCGATGGCTCTGAAAGTCTACCGTACCGT
AGTCTACTATAGTCTACACTTACCTTTCTCTTTTCTTCCCGTTCCACCAATCCTACGTACCCCCA
CCTTCCCCTGCCACTTCCCCACCCTTCCACTCTTCCCACCCTTTCTACACCCTTTCCACACCCTC
CCACACCCTACCACCCTTCCCACTTTGTTCCACCCATCCCACACCCCCCATCCTCGCTCATTCCC
GATTAGTTTCGGCTGCAAAGCTTAACTTTAGATGGCGGGGCTGAGACACGGCAGCGAACGATAGG
CGTGGGGTAAATACGAGCCACCCCAGCACCTACCCGGAAAAACACCCCACATTGCTGCCCCATTG
TTGCCCCATTGTTGGCCCACCCCGTCCCCGCTCTCCACGCCCACC


Right flanking sequence: Indices 201690 -- 202189
TACATGGCTGGCACTTCCGTTTTAAGCGAAAAATACCGGACCCCAACCACTCAGAAACAGAAAAA
GAAACCACAGCGGCGCCCGCAGCGTGAACCCACACCACCCACTGCGTTTTCCCTGCGTTTTTTCC
ACCCGCTACCCCCTCGTTGTCCACCCCTGTGGTCTCGCCTACGCGTCCTACATTCCCGATTGGCG
CGCGTGCAACGATCAATTTGTGACCGCACCTCACCTCACCTTCGCACCCTGCTCCACCACCCCTC
ACCGCACCGCACCGCACCCACTGTTTGGCGACCGGATGGCGAGTGAGAAAAAGCTTCGAAGCATG
TTTCCCCCCGGGGTAGCGATAAAGGACTTTGGCTACCCCCCGCTGCATGCCCTCCACACCGGCCC
GTCGCGACTATGTTACGACGGCGACACCGTCCACGACGACCCGCTGGGGTCCGACTCCGACTCCG
ACGCCGCCCCCGGAGACCCCGTGCACACCGCACAACCCGCACTGC



Found at i:202653 original size:19 final size:19

Alignment explanation


    Indices: 202629--202665  Score: 65
    Period size: 19  Copynumber: 1.9  Consensus size: 19

     202619 AGATTGGTAG

                               
     202629 GCTGAGGCTGGTAGGCTGA
          1 GCTGAGGCTGGTAGGCTGA

                        *     
     202648 GCTGAGGCTGGTGGGCTG
          1 GCTGAGGCTGGTAGGCTG

     202666 TTGGGCTGAG


Statistics
Matches: 17,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  19   17  1.00

ACGTcount: A:0.11, C:0.16, G:0.51, T:0.22


Consensus pattern (19 bp):   
GCTGAGGCTGGTAGGCTGA

Left flanking sequence: Indices 202129 -- 202628
TCCGACTCCGACTCCGACGCCGCCCCCGGAGACCCCGTGCACACCGCACAACCCGCACTGCCCGA
CCACCACCTACCCCGCACGGGAAGCGACGCCCGCACCTCGGACGAGATCAACCGCCAGGCGATCG
CGTTGTTCAGCTTCGCCCCCGAAAACGACAACGAGGTGGCGCTCACCGAGGGCCAGGTGATCTGG
ATCTCGTACCGCCACGGGCAGGGGTGGCTCGTGGCCGAGGACCCCCAGCTGGGGGAGATCGGGTT
GGTGCCCGAGGAGTACGTGGAGATCTGTTATGACCGTGACGAAATAATCGAAGACATTCCCCGCC
CGTTTTTGCCGCTGATCCTCAATGGGTTCGAGAAAAACGACGACGACGACGACTGGGAGGACACT
GATTTTGACGAGGGCGAGGAGGCCGAGCTCGCCCGGGGCGTTGACAAACTACTGGTTGACGAATA
GCATCAATGTATTATATGAGAATGACGGGAGGCGTAGATTGGTAG


Right flanking sequence: Indices 202666 -- 203165
TTGGGCTGAGGTTGGTATGCTGGCAAGGCTATTGGGTTACTGGTAAGGCTATTGGGCTACTGATA
ATAGCTTCTGGGCTACTAGTAATGGCTACTGGGCTACTGGTAATGGCTAGTGGTAGGGGCCTTAT
TACGATCGTTAATATTGTCTAACAGTGGCTAACTGTAGCGCCTTAGTGTGGTCAGCTATTTTTGT
AGCGGCCTGGTTGGCCAGTAAATTAGTACGCAAGCAATAAATGCAATGGTACGAGCATACCAAGT
CAGCAGCTGTAGTTGTGGTTTCAGGATTTTAGCCGGGGCTTGCTACCTGGGCTATCGTAACTGAC
ACTGATTACAAATTAACGGTTGTTAATCAGGGGCCAGGATCGTCAAGACGATTGCAAGCAGACAC
CGCCAGGGGCAGACCCGTCTAAGGTATAGGTGTATAAAGCATTTATCATATATCGTCTACAATTG
CACGCTAAGCCAGTCACTCTACGCCCTATCTTCCCCAACATTTCC



Found at i:202708 original size:20 final size:20

Alignment explanation


    Indices: 202685--202727  Score: 68
    Period size: 20  Copynumber: 2.1  Consensus size: 20

     202675 GGTTGGTATG

                             *  
     202685 CTGGCAAGGCTATTGGGTTA
          1 CTGGCAAGGCTATTGGGCTA

                *               
     202705 CTGGTAAGGCTATTGGGCTA
          1 CTGGCAAGGCTATTGGGCTA

               
     202725 CTG
          1 CTG

     202728 ATAATAGCTT


Statistics
Matches: 21,  Mismatches: 2, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  20   21  1.00

ACGTcount: A:0.19, C:0.16, G:0.35, T:0.30


Consensus pattern (20 bp):   
CTGGCAAGGCTATTGGGCTA

Left flanking sequence: Indices 202185 -- 202684
ACTGCCCGACCACCACCTACCCCGCACGGGAAGCGACGCCCGCACCTCGGACGAGATCAACCGCC
AGGCGATCGCGTTGTTCAGCTTCGCCCCCGAAAACGACAACGAGGTGGCGCTCACCGAGGGCCAG
GTGATCTGGATCTCGTACCGCCACGGGCAGGGGTGGCTCGTGGCCGAGGACCCCCAGCTGGGGGA
GATCGGGTTGGTGCCCGAGGAGTACGTGGAGATCTGTTATGACCGTGACGAAATAATCGAAGACA
TTCCCCGCCCGTTTTTGCCGCTGATCCTCAATGGGTTCGAGAAAAACGACGACGACGACGACTGG
GAGGACACTGATTTTGACGAGGGCGAGGAGGCCGAGCTCGCCCGGGGCGTTGACAAACTACTGGT
TGACGAATAGCATCAATGTATTATATGAGAATGACGGGAGGCGTAGATTGGTAGGCTGAGGCTGG
TAGGCTGAGCTGAGGCTGGTGGGCTGTTGGGCTGAGGTTGGTATG


Right flanking sequence: Indices 202728 -- 203227
ATAATAGCTTCTGGGCTACTAGTAATGGCTACTGGGCTACTGGTAATGGCTAGTGGTAGGGGCCT
TATTACGATCGTTAATATTGTCTAACAGTGGCTAACTGTAGCGCCTTAGTGTGGTCAGCTATTTT
TGTAGCGGCCTGGTTGGCCAGTAAATTAGTACGCAAGCAATAAATGCAATGGTACGAGCATACCA
AGTCAGCAGCTGTAGTTGTGGTTTCAGGATTTTAGCCGGGGCTTGCTACCTGGGCTATCGTAACT
GACACTGATTACAAATTAACGGTTGTTAATCAGGGGCCAGGATCGTCAAGACGATTGCAAGCAGA
CACCGCCAGGGGCAGACCCGTCTAAGGTATAGGTGTATAAAGCATTTATCATATATCGTCTACAA
TTGCACGCTAAGCCAGTCACTCTACGCCCTATCTTCCCCAACATTTCCCTGATACCATCTACGAG
GTGGTGGCGTGACTGCTAATAATAGAACACGATCGAACCCGAGCT



Found at i:202743 original size:21 final size:21

Alignment explanation


    Indices: 202713--202779  Score: 73
    Period size: 21  Copynumber: 3.2  Consensus size: 21

     202703 TACTGGTAAG

                *                
     202713 GCTATTGGGCTACTGATAATA
          1 GCTACTGGGCTACTGATAATA

               *                 *
     202734 GCTTCTGGGCTACT-AGTAATG
          1 GCTACTGGGCTACTGA-TAATA

                           *    *
     202755 GCTACTGGGCTACTGGTAATG
          1 GCTACTGGGCTACTGATAATA

                
     202776 GCTA
          1 GCTA

     202780 GTGGTAGGGG


Statistics
Matches: 39,  Mismatches: 5, Indels: 4
        0.81            0.10        0.08

Matches are distributed among these distances:
  20    1  0.03
  21   38  0.97

ACGTcount: A:0.22, C:0.18, G:0.28, T:0.31


Consensus pattern (21 bp):   
GCTACTGGGCTACTGATAATA

Left flanking sequence: Indices 202213 -- 202712
GGAAGCGACGCCCGCACCTCGGACGAGATCAACCGCCAGGCGATCGCGTTGTTCAGCTTCGCCCC
CGAAAACGACAACGAGGTGGCGCTCACCGAGGGCCAGGTGATCTGGATCTCGTACCGCCACGGGC
AGGGGTGGCTCGTGGCCGAGGACCCCCAGCTGGGGGAGATCGGGTTGGTGCCCGAGGAGTACGTG
GAGATCTGTTATGACCGTGACGAAATAATCGAAGACATTCCCCGCCCGTTTTTGCCGCTGATCCT
CAATGGGTTCGAGAAAAACGACGACGACGACGACTGGGAGGACACTGATTTTGACGAGGGCGAGG
AGGCCGAGCTCGCCCGGGGCGTTGACAAACTACTGGTTGACGAATAGCATCAATGTATTATATGA
GAATGACGGGAGGCGTAGATTGGTAGGCTGAGGCTGGTAGGCTGAGCTGAGGCTGGTGGGCTGTT
GGGCTGAGGTTGGTATGCTGGCAAGGCTATTGGGTTACTGGTAAG


Right flanking sequence: Indices 202780 -- 203279
GTGGTAGGGGCCTTATTACGATCGTTAATATTGTCTAACAGTGGCTAACTGTAGCGCCTTAGTGT
GGTCAGCTATTTTTGTAGCGGCCTGGTTGGCCAGTAAATTAGTACGCAAGCAATAAATGCAATGG
TACGAGCATACCAAGTCAGCAGCTGTAGTTGTGGTTTCAGGATTTTAGCCGGGGCTTGCTACCTG
GGCTATCGTAACTGACACTGATTACAAATTAACGGTTGTTAATCAGGGGCCAGGATCGTCAAGAC
GATTGCAAGCAGACACCGCCAGGGGCAGACCCGTCTAAGGTATAGGTGTATAAAGCATTTATCAT
ATATCGTCTACAATTGCACGCTAAGCCAGTCACTCTACGCCCTATCTTCCCCAACATTTCCCTGA
TACCATCTACGAGGTGGTGGCGTGACTGCTAATAATAGAACACGATCGAACCCGAGCTGGAACCC
CAGGAAGGGGTCATGTGGGACGAGGAGCGGACTCTTGGCACGGGC



Found at i:203431 original size:17 final size:18

Alignment explanation


    Indices: 203409--203442  Score: 61
    Period size: 18  Copynumber: 1.9  Consensus size: 18

     203399 AGTCCGAAAC

                              
     203409 GGGACA-ACGGGAGAAGT
          1 GGGACATACGGGAGAAGT

                             
     203426 GGGACATACGGGAGAAG
          1 GGGACATACGGGAGAAG

     203443 CGGGGCTTAG


Statistics
Matches: 16,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  17    6  0.38
  18   10  0.62

ACGTcount: A:0.35, C:0.12, G:0.47, T:0.06


Consensus pattern (18 bp):   
GGGACATACGGGAGAAGT

Left flanking sequence: Indices 202909 -- 203408
GTACGAGCATACCAAGTCAGCAGCTGTAGTTGTGGTTTCAGGATTTTAGCCGGGGCTTGCTACCT
GGGCTATCGTAACTGACACTGATTACAAATTAACGGTTGTTAATCAGGGGCCAGGATCGTCAAGA
CGATTGCAAGCAGACACCGCCAGGGGCAGACCCGTCTAAGGTATAGGTGTATAAAGCATTTATCA
TATATCGTCTACAATTGCACGCTAAGCCAGTCACTCTACGCCCTATCTTCCCCAACATTTCCCTG
ATACCATCTACGAGGTGGTGGCGTGACTGCTAATAATAGAACACGATCGAACCCGAGCTGGAACC
CCAGGAAGGGGTCATGTGGGACGAGGAGCGGACTCTTGGCACGGGCAGGAACAATGGCGAGCGCC
GTCTCGAATCTGCGGGTGTCGTGTGCTCGTTGGAATGGAAATAGGCGTGTGATTATTGGCCGTGA
GCGGGTGTCAGGGTCAGCCAGAGAGAGAATAAACGAGTCCGAAAC


Right flanking sequence: Indices 203443 -- 203942
CGGGGCTTAGTGGCTACAATGGTTACGCAAACGCTATGGGTGTGGTGGTTGTATAACGGGCACCG
GTGCCACCAGTGCCACCGATGCCACACTATAGGAGGCAAGTTTGTGATACAAACAGAAAAACTAG
TAGATAGTAATAACTACCGCCTCCGCCTCCAATCCCTCTTCCTTTGTCCCGTTGTCGTCTCCGTC
ACCCCTTCTCTCGGTGTTGATTACGTAATACTCTCATAGTTGCTTAGCTAATACTTTGGGTATCG
CTTACCTAATCCGCGATGCTCTTCACAGGAACAAACCACCCCACCACCCATCCACCATCCATGGC
CACGAAAAACAAAAAGGCAGCCAAGGGCCCCACCAAGGGCGTCGGCAAGGTGGCCAAGGTGCTGA
AGACCAAACAGAAACGCACCACCCGCTCCAACAAACACCAGATCGAGCAGCTCAACGCCGCCTCC
GACGACATCTCGGAGATCCACCAGTTGCTTGGCCAGTCGGGAGCC



Found at i:204339 original size:18 final size:19

Alignment explanation


    Indices: 204315--204367  Score: 90
    Period size: 18  Copynumber: 2.8  Consensus size: 19

     204305 GCTCGCGAAG

                               
     204315 CTCACAAGCTCACAATGAT
          1 CTCACAAGCTCACAATGAT

                      *        
     204334 -TCACAAGCTTACAATGAT
          1 CTCACAAGCTCACAATGAT

                            
     204352 CTCACAAGCTCACAAT
          1 CTCACAAGCTCACAAT

     204368 AGCACTATAG


Statistics
Matches: 31,  Mismatches: 2, Indels: 2
        0.89            0.06        0.06

Matches are distributed among these distances:
  18   17  0.55
  19   14  0.45

ACGTcount: A:0.38, C:0.30, G:0.09, T:0.23


Consensus pattern (19 bp):   
CTCACAAGCTCACAATGAT

Left flanking sequence: Indices 203815 -- 204314
AGGTGGCCAAGGTGCTGAAGACCAAACAGAAACGCACCACCCGCTCCAACAAACACCAGATCGAG
CAGCTCAACGCCGCCTCCGACGACATCTCGGAGATCCACCAGTTGCTTGGCCAGTCGGGAGCCAA
GGGCCCTGCGAAGGGCACTGCGCTCAACGTGCGCGAGTTGAAGGACGATTTCAAGCGCGACACCG
AGACGAAGCAGAAGGCGAAGGAGGCCGAGGCCGAGTTGAACTCGCAGCTCGACATCATCGCCCTG
ATGGGGCTCTAACCAGGGAGGCACTGAGGGGTGTGTTTAGTGCAGAGACGCTACGAGTTGATAAC
GCTAGGAGTTGCGTGAACGAGTACCGGGTGAGGGTTGTTCCAGTTAAAAGAAGTGACAGAACGGA
CCAAGCATGAGAGTCAGCATGAGAGTACTTGCTGGTTATGGGTGGCAGGCCCACGGAAGGATATA
GACTAATAAACTACAGTACAATAGGCACACAATGAGCTCGCGAAG


Right flanking sequence: Indices 204368 -- 204867
AGCACTATAGAGTACAATGAGCTCACAAGCTCACAAGCTCACAATAGCACTATAGAGTACAATAG
GTAGTGCCTCGTTGGTGCCTCGTTCGTGCCTCGTCTCGGAACATCCAGAAAATCCGGCTACTCGT
CAGACGAGCCCTACATTCCACGACGAAACCGAAGGGATGGATTCCAGAAAGACACAATGAACCAC
TCAACGCCTCACCTCACTCACCCCCCTTTCCGCTCTACCCCTTCCCTACCCTTTCGTTCTACCCC
CTTCCAATCACCCCCCTACCTTCTCCCTTCTCCCTTCTCCCACCATTACCCCATTGGGTTAAATT
TTTCACCTGTCCATAGACGACCGTTGTTCAGCACGCCAACCGTCGTCACACTACACCCACCCGCC
CAGGCTCCGGCCGCATTGACGGGGGCGGTCTCATACCGAAAACGGTTAATTAATCCCAATTGGAT
CTTGCGTAACGCACTACGCGACGCGGTCGCCACGGGTTGCTGGAA



Found at i:204356 original size:37 final size:37

Alignment explanation


    Indices: 204313--204403  Score: 114
    Period size: 37  Copynumber: 2.5  Consensus size: 37

     204303 GAGCTCGCGA

                                 *        **       
     204313 AGCTCACAAGCTCACAATGATTCAC-A-AGCTTACAATG
          1 AGCTCACAAGCTCACAAT-A-GCACTATAGAGTACAATG

             *                                   
     204350 ATCTCACAAGCTCACAATAGCACTATAGAGTACAATG
          1 AGCTCACAAGCTCACAATAGCACTATAGAGTACAATG

                             
     204387 AGCTCACAAGCTCACAA
          1 AGCTCACAAGCTCACAA

     204404 GCTCACAATA


Statistics
Matches: 47,  Mismatches: 5, Indels: 4
        0.84            0.09        0.07

Matches are distributed among these distances:
  35    3  0.06
  36    2  0.04
  37   42  0.89

ACGTcount: A:0.40, C:0.27, G:0.13, T:0.20


Consensus pattern (37 bp):   
AGCTCACAAGCTCACAATAGCACTATAGAGTACAATG

Left flanking sequence: Indices 203813 -- 204312
CAAGGTGGCCAAGGTGCTGAAGACCAAACAGAAACGCACCACCCGCTCCAACAAACACCAGATCG
AGCAGCTCAACGCCGCCTCCGACGACATCTCGGAGATCCACCAGTTGCTTGGCCAGTCGGGAGCC
AAGGGCCCTGCGAAGGGCACTGCGCTCAACGTGCGCGAGTTGAAGGACGATTTCAAGCGCGACAC
CGAGACGAAGCAGAAGGCGAAGGAGGCCGAGGCCGAGTTGAACTCGCAGCTCGACATCATCGCCC
TGATGGGGCTCTAACCAGGGAGGCACTGAGGGGTGTGTTTAGTGCAGAGACGCTACGAGTTGATA
ACGCTAGGAGTTGCGTGAACGAGTACCGGGTGAGGGTTGTTCCAGTTAAAAGAAGTGACAGAACG
GACCAAGCATGAGAGTCAGCATGAGAGTACTTGCTGGTTATGGGTGGCAGGCCCACGGAAGGATA
TAGACTAATAAACTACAGTACAATAGGCACACAATGAGCTCGCGA


Right flanking sequence: Indices 204404 -- 204903
GCTCACAATAGCACTATAGAGTACAATAGGTAGTGCCTCGTTGGTGCCTCGTTCGTGCCTCGTCT
CGGAACATCCAGAAAATCCGGCTACTCGTCAGACGAGCCCTACATTCCACGACGAAACCGAAGGG
ATGGATTCCAGAAAGACACAATGAACCACTCAACGCCTCACCTCACTCACCCCCCTTTCCGCTCT
ACCCCTTCCCTACCCTTTCGTTCTACCCCCTTCCAATCACCCCCCTACCTTCTCCCTTCTCCCTT
CTCCCACCATTACCCCATTGGGTTAAATTTTTCACCTGTCCATAGACGACCGTTGTTCAGCACGC
CAACCGTCGTCACACTACACCCACCCGCCCAGGCTCCGGCCGCATTGACGGGGGCGGTCTCATAC
CGAAAACGGTTAATTAATCCCAATTGGATCTTGCGTAACGCACTACGCGACGCGGTCGCCACGGG
TTGCTGGAACCCTCCCGAGGCCACGAACACCCAACGGCTGGTGGT



Found at i:204400 original size:8 final size:8

Alignment explanation


    Indices: 204387--204411  Score: 50
    Period size: 8  Copynumber: 3.1  Consensus size: 8

     204377 GAGTACAATG

                    
     204387 AGCTCACA
          1 AGCTCACA

                    
     204395 AGCTCACA
          1 AGCTCACA

                    
     204403 AGCTCACA
          1 AGCTCACA

             
     204411 A
          1 A

     204412 TAGCACTATA


Statistics
Matches: 17,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   8   17  1.00

ACGTcount: A:0.40, C:0.36, G:0.12, T:0.12


Consensus pattern (8 bp):   
AGCTCACA

Left flanking sequence: Indices 203887 -- 204386
ACGCCGCCTCCGACGACATCTCGGAGATCCACCAGTTGCTTGGCCAGTCGGGAGCCAAGGGCCCT
GCGAAGGGCACTGCGCTCAACGTGCGCGAGTTGAAGGACGATTTCAAGCGCGACACCGAGACGAA
GCAGAAGGCGAAGGAGGCCGAGGCCGAGTTGAACTCGCAGCTCGACATCATCGCCCTGATGGGGC
TCTAACCAGGGAGGCACTGAGGGGTGTGTTTAGTGCAGAGACGCTACGAGTTGATAACGCTAGGA
GTTGCGTGAACGAGTACCGGGTGAGGGTTGTTCCAGTTAAAAGAAGTGACAGAACGGACCAAGCA
TGAGAGTCAGCATGAGAGTACTTGCTGGTTATGGGTGGCAGGCCCACGGAAGGATATAGACTAAT
AAACTACAGTACAATAGGCACACAATGAGCTCGCGAAGCTCACAAGCTCACAATGATTCACAAGC
TTACAATGATCTCACAAGCTCACAATAGCACTATAGAGTACAATG


Right flanking sequence: Indices 204412 -- 204911
TAGCACTATAGAGTACAATAGGTAGTGCCTCGTTGGTGCCTCGTTCGTGCCTCGTCTCGGAACAT
CCAGAAAATCCGGCTACTCGTCAGACGAGCCCTACATTCCACGACGAAACCGAAGGGATGGATTC
CAGAAAGACACAATGAACCACTCAACGCCTCACCTCACTCACCCCCCTTTCCGCTCTACCCCTTC
CCTACCCTTTCGTTCTACCCCCTTCCAATCACCCCCCTACCTTCTCCCTTCTCCCTTCTCCCACC
ATTACCCCATTGGGTTAAATTTTTCACCTGTCCATAGACGACCGTTGTTCAGCACGCCAACCGTC
GTCACACTACACCCACCCGCCCAGGCTCCGGCCGCATTGACGGGGGCGGTCTCATACCGAAAACG
GTTAATTAATCCCAATTGGATCTTGCGTAACGCACTACGCGACGCGGTCGCCACGGGTTGCTGGA
ACCCTCCCGAGGCCACGAACACCCAACGGCTGGTGGTGGTTGCAC



Found at i:204452 original size:11 final size:11

Alignment explanation


    Indices: 204436--204466  Score: 53
    Period size: 11  Copynumber: 2.8  Consensus size: 11

     204426 ACAATAGGTA

                      *
     204436 GTGCCTCGTTG
          1 GTGCCTCGTTC

                       
     204447 GTGCCTCGTTC
          1 GTGCCTCGTTC

                     
     204458 GTGCCTCGT
          1 GTGCCTCGT

     204467 CTCGGAACAT


Statistics
Matches: 19,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  11   19  1.00

ACGTcount: A:0.00, C:0.32, G:0.32, T:0.35


Consensus pattern (11 bp):   
GTGCCTCGTTC

Left flanking sequence: Indices 203936 -- 204435
GGGAGCCAAGGGCCCTGCGAAGGGCACTGCGCTCAACGTGCGCGAGTTGAAGGACGATTTCAAGC
GCGACACCGAGACGAAGCAGAAGGCGAAGGAGGCCGAGGCCGAGTTGAACTCGCAGCTCGACATC
ATCGCCCTGATGGGGCTCTAACCAGGGAGGCACTGAGGGGTGTGTTTAGTGCAGAGACGCTACGA
GTTGATAACGCTAGGAGTTGCGTGAACGAGTACCGGGTGAGGGTTGTTCCAGTTAAAAGAAGTGA
CAGAACGGACCAAGCATGAGAGTCAGCATGAGAGTACTTGCTGGTTATGGGTGGCAGGCCCACGG
AAGGATATAGACTAATAAACTACAGTACAATAGGCACACAATGAGCTCGCGAAGCTCACAAGCTC
ACAATGATTCACAAGCTTACAATGATCTCACAAGCTCACAATAGCACTATAGAGTACAATGAGCT
CACAAGCTCACAAGCTCACAATAGCACTATAGAGTACAATAGGTA


Right flanking sequence: Indices 204467 -- 204966
CTCGGAACATCCAGAAAATCCGGCTACTCGTCAGACGAGCCCTACATTCCACGACGAAACCGAAG
GGATGGATTCCAGAAAGACACAATGAACCACTCAACGCCTCACCTCACTCACCCCCCTTTCCGCT
CTACCCCTTCCCTACCCTTTCGTTCTACCCCCTTCCAATCACCCCCCTACCTTCTCCCTTCTCCC
TTCTCCCACCATTACCCCATTGGGTTAAATTTTTCACCTGTCCATAGACGACCGTTGTTCAGCAC
GCCAACCGTCGTCACACTACACCCACCCGCCCAGGCTCCGGCCGCATTGACGGGGGCGGTCTCAT
ACCGAAAACGGTTAATTAATCCCAATTGGATCTTGCGTAACGCACTACGCGACGCGGTCGCCACG
GGTTGCTGGAACCCTCCCGAGGCCACGAACACCCAACGGCTGGTGGTGGTTGCACCTGAAACTCG
CTAGCCACCCGCCGTCGACGCCCATTGTCTGCTGGAATGTGCATG



Found at i:205305 original size:11 final size:11

Alignment explanation


    Indices: 205289--205313  Score: 50
    Period size: 11  Copynumber: 2.3  Consensus size: 11

     205279 GTTTGTTTTG

                       
     205289 GTGTCTGAAGA
          1 GTGTCTGAAGA

                       
     205300 GTGTCTGAAGA
          1 GTGTCTGAAGA

               
     205311 GTG
          1 GTG

     205314 GGGTGGGCGG


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  11   14  1.00

ACGTcount: A:0.24, C:0.08, G:0.40, T:0.28


Consensus pattern (11 bp):   
GTGTCTGAAGA

Left flanking sequence: Indices 204789 -- 205288
CATACCGAAAACGGTTAATTAATCCCAATTGGATCTTGCGTAACGCACTACGCGACGCGGTCGCC
ACGGGTTGCTGGAACCCTCCCGAGGCCACGAACACCCAACGGCTGGTGGTGGTTGCACCTGAAAC
TCGCTAGCCACCCGCCGTCGACGCCCATTGTCTGCTGGAATGTGCATGCCGCGTACCCCTGCTGC
GCCCCAGGCATCCCTGGTGACAAATAAGGTTGCAAAATAGTCTATGTCGCAGTCGATGGACGGGA
GGAAGCAGTAAGAAGAGAAAGGAAGAAAGGAAAGGAAAGAAGTCAGTTAGCGAAAGAAAGCAGTG
TACCCGTTTAAGCCCATCGGATCAGATCAGCCGGACCCTTCATCTCATCTCATGCACCCCCCTGT
GGCCGCCTGGGAGACGAGGCGAGCCCACACGAGCAGACGCCCGTGCATGCGGCGATGCAGTGGTC
TCGATCCGGGCGCGAGGACGCTGGGATGGTTGTTTGTTTGTTTTG


Right flanking sequence: Indices 205314 -- 205813
GGGTGGGCGGTTTAGTTGATGCTTGGATCGGCGGGCTAGCCCACCGATTAGCCCACTCGATAGCC
CCTTCCGATCTAAACTTAAAACGGCAGCAGTGGCAGCAATGACGGAAGCAATGAAACGGTCAGGG
AGGGTCTAGAATTTGAGGTTTTGTGTGTGAGTGGGAAATGCGCTTAGTAGTTGGTGGTGGAATGG
TAGCTTGATGGTAGAGAAAGCGCTGATTTAAAGAAATTGAACCAGAGAAATAGCCCTTGATCAGA
GAAATAGCGCTCAAATAGAGATGGTGCTCAATTAGAGAATAGAGAAATAGCGCTCAATTAAGAAA
AGCGCTCAATTGTGGAGGAATGAATTAGCTTAGTGGTGTGGTTTCAAGAGAACTACTAGGCCCAA
AACTATTTCCGGACTGGCTCTCACACCACCACCACCAACCACCACCCATTGTAGTCCCACCAACC
CCACCTTCGTAGTCCCAGAAACCACCACCTTTGTAGCCCCACCAT



Found at i:205644 original size:17 final size:18

Alignment explanation


    Indices: 205616--205649  Score: 61
    Period size: 17  Copynumber: 1.9  Consensus size: 18

     205606 TAGAGAATAG

                              
     205616 AGAAATAGCGCTCAATTA
          1 AGAAATAGCGCTCAATTA

                             
     205634 AGAAA-AGCGCTCAATT
          1 AGAAATAGCGCTCAATT

     205650 GTGGAGGAAT


Statistics
Matches: 16,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  17   11  0.69
  18    5  0.31

ACGTcount: A:0.44, C:0.18, G:0.18, T:0.21


Consensus pattern (18 bp):   
AGAAATAGCGCTCAATTA

Left flanking sequence: Indices 205116 -- 205615
CCCGTTTAAGCCCATCGGATCAGATCAGCCGGACCCTTCATCTCATCTCATGCACCCCCCTGTGG
CCGCCTGGGAGACGAGGCGAGCCCACACGAGCAGACGCCCGTGCATGCGGCGATGCAGTGGTCTC
GATCCGGGCGCGAGGACGCTGGGATGGTTGTTTGTTTGTTTTGGTGTCTGAAGAGTGTCTGAAGA
GTGGGGTGGGCGGTTTAGTTGATGCTTGGATCGGCGGGCTAGCCCACCGATTAGCCCACTCGATA
GCCCCTTCCGATCTAAACTTAAAACGGCAGCAGTGGCAGCAATGACGGAAGCAATGAAACGGTCA
GGGAGGGTCTAGAATTTGAGGTTTTGTGTGTGAGTGGGAAATGCGCTTAGTAGTTGGTGGTGGAA
TGGTAGCTTGATGGTAGAGAAAGCGCTGATTTAAAGAAATTGAACCAGAGAAATAGCCCTTGATC
AGAGAAATAGCGCTCAAATAGAGATGGTGCTCAATTAGAGAATAG


Right flanking sequence: Indices 205650 -- 206149
GTGGAGGAATGAATTAGCTTAGTGGTGTGGTTTCAAGAGAACTACTAGGCCCAAAACTATTTCCG
GACTGGCTCTCACACCACCACCACCAACCACCACCCATTGTAGTCCCACCAACCCCACCTTCGTA
GTCCCAGAAACCACCACCTTTGTAGCCCCACCATCAACCCACCAACCACCACCATCATACCAATA
ACCCTGCATCTATCCCACTCTCCTCTCCTCCTCCCTCCGTCTCCTTTTCTCAAAAAGCATGACCA
TTTGCCAAACTATCTTTCCACCACTTCCACTTCCACTTTCACTCCACTGGCCACCTTCCATACCA
GGCCCAGACCACCAGACCCCTCGCCACCCACAGCGCCACACTAAAAACCACCCTCACCCACCCAC
AAACCACCCGTGACCCAATTCCACCCACTACCCACTACCACCCACCACCTCACCCCTACTAACCA
CCTATGCCGCCCACCACGTTCTCCTCCTACCTCCTCCCACCTCCT



Found at i:205796 original size:24 final size:23

Alignment explanation


    Indices: 205735--205810  Score: 73
    Period size: 24  Copynumber: 3.2  Consensus size: 23

     205725 CACACCACCA

                *                    
     205735 CCACCAACCACCACCCATTGTAGTC
          1 CCACAAACCACCA-CC-TTGTAGTC

                *                   
     205760 CCACCAACC-CCACCTTCGTAGTC
          1 CCACAAACCACCACCTT-GTAGTC

               *                  * 
     205783 CCAGAAACCACCACCTTTGTAGCC
          1 CCACAAACCACCACC-TTGTAGTC

                
     205807 CCAC
          1 CCAC

     205811 CATCAACCCA


Statistics
Matches: 44,  Mismatches: 4, Indels: 7
        0.80            0.07        0.13

Matches are distributed among these distances:
  22    2  0.05
  23   15  0.34
  24   16  0.36
  25   11  0.25

ACGTcount: A:0.26, C:0.49, G:0.09, T:0.16


Consensus pattern (23 bp):   
CCACAAACCACCACCTTGTAGTC

Left flanking sequence: Indices 205235 -- 205734
GCAGTGGTCTCGATCCGGGCGCGAGGACGCTGGGATGGTTGTTTGTTTGTTTTGGTGTCTGAAGA
GTGTCTGAAGAGTGGGGTGGGCGGTTTAGTTGATGCTTGGATCGGCGGGCTAGCCCACCGATTAG
CCCACTCGATAGCCCCTTCCGATCTAAACTTAAAACGGCAGCAGTGGCAGCAATGACGGAAGCAA
TGAAACGGTCAGGGAGGGTCTAGAATTTGAGGTTTTGTGTGTGAGTGGGAAATGCGCTTAGTAGT
TGGTGGTGGAATGGTAGCTTGATGGTAGAGAAAGCGCTGATTTAAAGAAATTGAACCAGAGAAAT
AGCCCTTGATCAGAGAAATAGCGCTCAAATAGAGATGGTGCTCAATTAGAGAATAGAGAAATAGC
GCTCAATTAAGAAAAGCGCTCAATTGTGGAGGAATGAATTAGCTTAGTGGTGTGGTTTCAAGAGA
ACTACTAGGCCCAAAACTATTTCCGGACTGGCTCTCACACCACCA


Right flanking sequence: Indices 205811 -- 206310
CATCAACCCACCAACCACCACCATCATACCAATAACCCTGCATCTATCCCACTCTCCTCTCCTCC
TCCCTCCGTCTCCTTTTCTCAAAAAGCATGACCATTTGCCAAACTATCTTTCCACCACTTCCACT
TCCACTTTCACTCCACTGGCCACCTTCCATACCAGGCCCAGACCACCAGACCCCTCGCCACCCAC
AGCGCCACACTAAAAACCACCCTCACCCACCCACAAACCACCCGTGACCCAATTCCACCCACTAC
CCACTACCACCCACCACCTCACCCCTACTAACCACCTATGCCGCCCACCACGTTCTCCTCCTACC
TCCTCCCACCTCCTCCCACCTCCTCCTCTCCTCCTCCCACCTCCTCCTCTCCTCCTCCCACCTCC
TCCTCTCCCCCTTCGCGTTATTTTTTTCCATGTAAATAGAACGCGTCTGTACCGCGTCTCCGACC
GCGACTGCCTGCACACAGCCGCCTACTTCCAGGCGCATTTTTCCC



Found at i:206131 original size:3 final size:3

Alignment explanation


    Indices: 206125--206205  Score: 67
    Period size: 3  Copynumber: 26.0  Consensus size: 3

     206115 CCACCACGTT

                                   *            *                          
     206125 CTC CTC CTAC CTC CTCC CAC CTC CTCC CAC CTC CTC CT- CTC CTC CTCC
          1 CTC CTC CT-C CTC CT-C CTC CTC CT-C CTC CTC CTC CTC CTC CTC CT-C

             *                            *             
     206173 CAC CTC CTC CT- CTC CTC CTCC CAC CTC CTC CTC
          1 CTC CTC CTC CTC CTC CTC CT-C CTC CTC CTC CTC

     206206 TCCCCCTTCG


Statistics
Matches: 63,  Mismatches: 8, Indels: 14
        0.74            0.09        0.16

Matches are distributed among these distances:
   2    4  0.06
   3   48  0.76
   4   11  0.17

ACGTcount: A:0.06, C:0.67, G:0.00, T:0.27


Consensus pattern (3 bp):   
CTC

Left flanking sequence: Indices 205625 -- 206124
GCTCAATTAAGAAAAGCGCTCAATTGTGGAGGAATGAATTAGCTTAGTGGTGTGGTTTCAAGAGA
ACTACTAGGCCCAAAACTATTTCCGGACTGGCTCTCACACCACCACCACCAACCACCACCCATTG
TAGTCCCACCAACCCCACCTTCGTAGTCCCAGAAACCACCACCTTTGTAGCCCCACCATCAACCC
ACCAACCACCACCATCATACCAATAACCCTGCATCTATCCCACTCTCCTCTCCTCCTCCCTCCGT
CTCCTTTTCTCAAAAAGCATGACCATTTGCCAAACTATCTTTCCACCACTTCCACTTCCACTTTC
ACTCCACTGGCCACCTTCCATACCAGGCCCAGACCACCAGACCCCTCGCCACCCACAGCGCCACA
CTAAAAACCACCCTCACCCACCCACAAACCACCCGTGACCCAATTCCACCCACTACCCACTACCA
CCCACCACCTCACCCCTACTAACCACCTATGCCGCCCACCACGTT


Right flanking sequence: Indices 206206 -- 206705
TCCCCCTTCGCGTTATTTTTTTCCATGTAAATAGAACGCGTCTGTACCGCGTCTCCGACCGCGAC
TGCCTGCACACAGCCGCCTACTTCCAGGCGCATTTTTCCCAAAAATTTACCCTCACCACCGCTAC
CGCATCCTCCCCATGTCGACCCATTCGAGACAGCCGCTGCTTGCGCTGATCCAGCTGGGCCACTC
GCACCCGCAGATGATCGGTCCCTGGCGGCTCGGCAAAACCCTCGGCCGCGGGTCCACCGGCCGGG
TGCTTTTGGCCACCCACCAGCACACAGGGCAAAAGGCCGCGGTCAAAGTGGTGCTGAAACGCGAT
CTCCAGGACGAGGAACACACCGAGGAGGGCCTCCCCTACGGCATCGAGCGCGAGATCATCATCAT
GAAGTTGTTGACCCACCCCAACGTGTTGCGGTTGTACGACGTGTGGGAGACCCTGAAGGCGCTCT
ACCTCGTGTTGGAGTACGTCGAGGGCGGCGAGCTCTTCGACTTGC



Found at i:206140 original size:10 final size:10

Alignment explanation


    Indices: 206125--206203  Score: 113
    Period size: 10  Copynumber: 7.7  Consensus size: 10

     206115 CCACCACGTT

                   *  
     206125 CTCCTCCTAC
          1 CTCCTCCCAC

                      
     206135 CTCCTCCCAC
          1 CTCCTCCCAC

                      
     206145 CTCCTCCCAC
          1 CTCCTCCCAC

                     * 
     206155 CTCCTCCTCTC
          1 CTCCTCC-CAC

                      
     206166 CTCCTCCCAC
          1 CTCCTCCCAC

                     * 
     206176 CTCCTCCTCTC
          1 CTCCTCC-CAC

                      
     206187 CTCCTCCCAC
          1 CTCCTCCCAC

                   
     206197 CTCCTCC
          1 CTCCTCC

     206204 TCTCCCCCTT


Statistics
Matches: 62,  Mismatches: 5, Indels: 4
        0.87            0.07        0.06

Matches are distributed among these distances:
  10   44  0.71
  11   18  0.29

ACGTcount: A:0.06, C:0.67, G:0.00, T:0.27


Consensus pattern (10 bp):   
CTCCTCCCAC

Left flanking sequence: Indices 205625 -- 206124
GCTCAATTAAGAAAAGCGCTCAATTGTGGAGGAATGAATTAGCTTAGTGGTGTGGTTTCAAGAGA
ACTACTAGGCCCAAAACTATTTCCGGACTGGCTCTCACACCACCACCACCAACCACCACCCATTG
TAGTCCCACCAACCCCACCTTCGTAGTCCCAGAAACCACCACCTTTGTAGCCCCACCATCAACCC
ACCAACCACCACCATCATACCAATAACCCTGCATCTATCCCACTCTCCTCTCCTCCTCCCTCCGT
CTCCTTTTCTCAAAAAGCATGACCATTTGCCAAACTATCTTTCCACCACTTCCACTTCCACTTTC
ACTCCACTGGCCACCTTCCATACCAGGCCCAGACCACCAGACCCCTCGCCACCCACAGCGCCACA
CTAAAAACCACCCTCACCCACCCACAAACCACCCGTGACCCAATTCCACCCACTACCCACTACCA
CCCACCACCTCACCCCTACTAACCACCTATGCCGCCCACCACGTT


Right flanking sequence: Indices 206204 -- 206703
TCTCCCCCTTCGCGTTATTTTTTTCCATGTAAATAGAACGCGTCTGTACCGCGTCTCCGACCGCG
ACTGCCTGCACACAGCCGCCTACTTCCAGGCGCATTTTTCCCAAAAATTTACCCTCACCACCGCT
ACCGCATCCTCCCCATGTCGACCCATTCGAGACAGCCGCTGCTTGCGCTGATCCAGCTGGGCCAC
TCGCACCCGCAGATGATCGGTCCCTGGCGGCTCGGCAAAACCCTCGGCCGCGGGTCCACCGGCCG
GGTGCTTTTGGCCACCCACCAGCACACAGGGCAAAAGGCCGCGGTCAAAGTGGTGCTGAAACGCG
ATCTCCAGGACGAGGAACACACCGAGGAGGGCCTCCCCTACGGCATCGAGCGCGAGATCATCATC
ATGAAGTTGTTGACCCACCCCAACGTGTTGCGGTTGTACGACGTGTGGGAGACCCTGAAGGCGCT
CTACCTCGTGTTGGAGTACGTCGAGGGCGGCGAGCTCTTCGACTT



Found at i:206170 original size:21 final size:21

Alignment explanation


    Indices: 206125--206208  Score: 143
    Period size: 21  Copynumber: 4.0  Consensus size: 21

     206115 CCACCACGTT

                   *           * 
     206125 CTCCTCCTACCTCCTCC-CAC
          1 CTCCTCCCACCTCCTCCTCTC

                                 
     206145 CTCCTCCCACCTCCTCCTCTC
          1 CTCCTCCCACCTCCTCCTCTC

                                 
     206166 CTCCTCCCACCTCCTCCTCTC
          1 CTCCTCCCACCTCCTCCTCTC

                                 
     206187 CTCCTCCCACCTCCTCCTCTC
          1 CTCCTCCCACCTCCTCCTCTC

             
     206208 C
          1 C

     206209 CCCTTCGCGT


Statistics
Matches: 61,  Mismatches: 2, Indels: 1
        0.95            0.03        0.02

Matches are distributed among these distances:
  20   16  0.26
  21   45  0.74

ACGTcount: A:0.06, C:0.67, G:0.00, T:0.27


Consensus pattern (21 bp):   
CTCCTCCCACCTCCTCCTCTC

Left flanking sequence: Indices 205625 -- 206124
GCTCAATTAAGAAAAGCGCTCAATTGTGGAGGAATGAATTAGCTTAGTGGTGTGGTTTCAAGAGA
ACTACTAGGCCCAAAACTATTTCCGGACTGGCTCTCACACCACCACCACCAACCACCACCCATTG
TAGTCCCACCAACCCCACCTTCGTAGTCCCAGAAACCACCACCTTTGTAGCCCCACCATCAACCC
ACCAACCACCACCATCATACCAATAACCCTGCATCTATCCCACTCTCCTCTCCTCCTCCCTCCGT
CTCCTTTTCTCAAAAAGCATGACCATTTGCCAAACTATCTTTCCACCACTTCCACTTCCACTTTC
ACTCCACTGGCCACCTTCCATACCAGGCCCAGACCACCAGACCCCTCGCCACCCACAGCGCCACA
CTAAAAACCACCCTCACCCACCCACAAACCACCCGTGACCCAATTCCACCCACTACCCACTACCA
CCCACCACCTCACCCCTACTAACCACCTATGCCGCCCACCACGTT


Right flanking sequence: Indices 206209 -- 206708
CCCTTCGCGTTATTTTTTTCCATGTAAATAGAACGCGTCTGTACCGCGTCTCCGACCGCGACTGC
CTGCACACAGCCGCCTACTTCCAGGCGCATTTTTCCCAAAAATTTACCCTCACCACCGCTACCGC
ATCCTCCCCATGTCGACCCATTCGAGACAGCCGCTGCTTGCGCTGATCCAGCTGGGCCACTCGCA
CCCGCAGATGATCGGTCCCTGGCGGCTCGGCAAAACCCTCGGCCGCGGGTCCACCGGCCGGGTGC
TTTTGGCCACCCACCAGCACACAGGGCAAAAGGCCGCGGTCAAAGTGGTGCTGAAACGCGATCTC
CAGGACGAGGAACACACCGAGGAGGGCCTCCCCTACGGCATCGAGCGCGAGATCATCATCATGAA
GTTGTTGACCCACCCCAACGTGTTGCGGTTGTACGACGTGTGGGAGACCCTGAAGGCGCTCTACC
TCGTGTTGGAGTACGTCGAGGGCGGCGAGCTCTTCGACTTGCTCG



Found at i:207943 original size:9 final size:9

Alignment explanation


    Indices: 207929--207967  Score: 51
    Period size: 9  Copynumber: 4.0  Consensus size: 9

     207919 CGGCAGTAGT

                     
     207929 CAGGCCAAC
          1 CAGGCCAAC

                     
     207938 CAGGCCAAC
          1 CAGGCCAAC

                        
     207947 AGTCAGGCCAAC
          1 ---CAGGCCAAC

                     
     207959 CAGGCCAAC
          1 CAGGCCAAC

     207968 AGTCAGGCCA


Statistics
Matches: 27,  Mismatches: 0, Indels: 6
        0.82            0.00        0.18

Matches are distributed among these distances:
   9   18  0.67
  12    9  0.33

ACGTcount: A:0.33, C:0.41, G:0.23, T:0.03


Consensus pattern (9 bp):   
CAGGCCAAC

Left flanking sequence: Indices 207429 -- 207928
CCGACGACCTGGCGCCGTCGAGCTCGCACCTGCTGCCGAAAAAGCGCCTTCCCGCGTCCACGTCG
TTCAACCTGCGGCGGCTGCGCAACTCGTTGGTGGCGCTGCGGCCAGCGCTGCGGCCGCTGTCGTT
CCAGTACCTCGGCGCGGCCATCTCCACCGGGTCGAACGACCTGCGCCGCCGCTCGCTCATCGGCG
GTGGCATGTCGGTGGCGCACTCGCGGGTGCTGTTGGCCAACCTGCCGCACAAACTGCTGCCGCTG
AAGCTGCCGCGGTACCTGCCCAAGAAGCGCAGTCCCGCCCGGGTGCGTGGAGGAGCCGTGAGAGA
CGGCGACGGTGCTGTGCGCAACGGAGCTGTGCGCGATGGCCCGGTGCGCGACATCTACTCTGAGA
TTATGAGTGCCCAGGCCAAGGGCCAGACAGGCCCGCAGACCCTGGCGTTTGCTGGGTTCAACCCG
ACGCCGTTGACGGAGCTGCCGCCTATTAGACAGCACGGCAGTAGT


Right flanking sequence: Indices 207968 -- 208467
AGTCAGGCCAACAGCCAGTATGCTAACCAGCACGCTAACCAGGCCAGCCAGTACGCTAACCAGCA
CACCACCCAGCCCATCACCCAGCCCATCACCCAGCACGCCACCTACATGTCGCAGGTGACCCGGG
CCCTGGTCCAGTACACCGCCATCGGCGGCGGCCAGCCGCTGCCCATCAAAGAAACGGACTCGGAA
ACAGTCCGCGGGCACAAGCTCGCGTACGAGCAGGCCAAGGGCATCGCCGCGGCCGCCGGGATCGG
GCTGGGCCGCGCACCGGCCGTGGCACAGCTTCCACCGCTCACCGACGACAACATGGGCCCGCCGG
TGGTGGACGAGGTCCCACATGGCGACCTCATGGCGCTGGCCCCGCTCAAGCAGCAGCCGTTGGCG
TACGAGCTGGCGCTGGTGCTGGCGAAGACCCTCGCGTCGCTGAAGCTGCTGGAGCTGTTGCAAAA
GCTCGCGGCCACGAACAAGGTGACCAAGTCCGGGTCGCGGATGCT



Found at i:207951 original size:21 final size:21

Alignment explanation


    Indices: 207926--207979  Score: 108
    Period size: 21  Copynumber: 2.6  Consensus size: 21

     207916 GCACGGCAGT

                                 
     207926 AGTCAGGCCAACCAGGCCAAC
          1 AGTCAGGCCAACCAGGCCAAC

                                 
     207947 AGTCAGGCCAACCAGGCCAAC
          1 AGTCAGGCCAACCAGGCCAAC

                        
     207968 AGTCAGGCCAAC
          1 AGTCAGGCCAAC

     207980 AGCCAGTATG


Statistics
Matches: 33,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  21   33  1.00

ACGTcount: A:0.33, C:0.37, G:0.24, T:0.06


Consensus pattern (21 bp):   
AGTCAGGCCAACCAGGCCAAC

Left flanking sequence: Indices 207426 -- 207925
GCTCCGACGACCTGGCGCCGTCGAGCTCGCACCTGCTGCCGAAAAAGCGCCTTCCCGCGTCCACG
TCGTTCAACCTGCGGCGGCTGCGCAACTCGTTGGTGGCGCTGCGGCCAGCGCTGCGGCCGCTGTC
GTTCCAGTACCTCGGCGCGGCCATCTCCACCGGGTCGAACGACCTGCGCCGCCGCTCGCTCATCG
GCGGTGGCATGTCGGTGGCGCACTCGCGGGTGCTGTTGGCCAACCTGCCGCACAAACTGCTGCCG
CTGAAGCTGCCGCGGTACCTGCCCAAGAAGCGCAGTCCCGCCCGGGTGCGTGGAGGAGCCGTGAG
AGACGGCGACGGTGCTGTGCGCAACGGAGCTGTGCGCGATGGCCCGGTGCGCGACATCTACTCTG
AGATTATGAGTGCCCAGGCCAAGGGCCAGACAGGCCCGCAGACCCTGGCGTTTGCTGGGTTCAAC
CCGACGCCGTTGACGGAGCTGCCGCCTATTAGACAGCACGGCAGT


Right flanking sequence: Indices 207980 -- 208479
AGCCAGTATGCTAACCAGCACGCTAACCAGGCCAGCCAGTACGCTAACCAGCACACCACCCAGCC
CATCACCCAGCCCATCACCCAGCACGCCACCTACATGTCGCAGGTGACCCGGGCCCTGGTCCAGT
ACACCGCCATCGGCGGCGGCCAGCCGCTGCCCATCAAAGAAACGGACTCGGAAACAGTCCGCGGG
CACAAGCTCGCGTACGAGCAGGCCAAGGGCATCGCCGCGGCCGCCGGGATCGGGCTGGGCCGCGC
ACCGGCCGTGGCACAGCTTCCACCGCTCACCGACGACAACATGGGCCCGCCGGTGGTGGACGAGG
TCCCACATGGCGACCTCATGGCGCTGGCCCCGCTCAAGCAGCAGCCGTTGGCGTACGAGCTGGCG
CTGGTGCTGGCGAAGACCCTCGCGTCGCTGAAGCTGCTGGAGCTGTTGCAAAAGCTCGCGGCCAC
GAACAAGGTGACCAAGTCCGGGTCGCGGATGCTGGTGGCGCTGAA



Found at i:207955 original size:12 final size:12

Alignment explanation


    Indices: 207926--207981  Score: 70
    Period size: 12  Copynumber: 5.2  Consensus size: 12

     207916 GCACGGCAGT

                        
     207926 AGTCAGGCCAAC
          1 AGTCAGGCCAAC

                        
     207938 ---CAGGCCAAC
          1 AGTCAGGCCAAC

                        
     207947 AGTCAGGCCAAC
          1 AGTCAGGCCAAC

                        
     207959 ---CAGGCCAAC
          1 AGTCAGGCCAAC

                        
     207968 AGTCAGGCCAAC
          1 AGTCAGGCCAAC

              
     207980 AG
          1 AG

     207982 CCAGTATGCT


Statistics
Matches: 38,  Mismatches: 0, Indels: 12
        0.76            0.00        0.24

Matches are distributed among these distances:
   9   18  0.47
  12   20  0.53

ACGTcount: A:0.34, C:0.36, G:0.25, T:0.05


Consensus pattern (12 bp):   
AGTCAGGCCAAC

Left flanking sequence: Indices 207426 -- 207925
GCTCCGACGACCTGGCGCCGTCGAGCTCGCACCTGCTGCCGAAAAAGCGCCTTCCCGCGTCCACG
TCGTTCAACCTGCGGCGGCTGCGCAACTCGTTGGTGGCGCTGCGGCCAGCGCTGCGGCCGCTGTC
GTTCCAGTACCTCGGCGCGGCCATCTCCACCGGGTCGAACGACCTGCGCCGCCGCTCGCTCATCG
GCGGTGGCATGTCGGTGGCGCACTCGCGGGTGCTGTTGGCCAACCTGCCGCACAAACTGCTGCCG
CTGAAGCTGCCGCGGTACCTGCCCAAGAAGCGCAGTCCCGCCCGGGTGCGTGGAGGAGCCGTGAG
AGACGGCGACGGTGCTGTGCGCAACGGAGCTGTGCGCGATGGCCCGGTGCGCGACATCTACTCTG
AGATTATGAGTGCCCAGGCCAAGGGCCAGACAGGCCCGCAGACCCTGGCGTTTGCTGGGTTCAAC
CCGACGCCGTTGACGGAGCTGCCGCCTATTAGACAGCACGGCAGT


Right flanking sequence: Indices 207982 -- 208481
CCAGTATGCTAACCAGCACGCTAACCAGGCCAGCCAGTACGCTAACCAGCACACCACCCAGCCCA
TCACCCAGCCCATCACCCAGCACGCCACCTACATGTCGCAGGTGACCCGGGCCCTGGTCCAGTAC
ACCGCCATCGGCGGCGGCCAGCCGCTGCCCATCAAAGAAACGGACTCGGAAACAGTCCGCGGGCA
CAAGCTCGCGTACGAGCAGGCCAAGGGCATCGCCGCGGCCGCCGGGATCGGGCTGGGCCGCGCAC
CGGCCGTGGCACAGCTTCCACCGCTCACCGACGACAACATGGGCCCGCCGGTGGTGGACGAGGTC
CCACATGGCGACCTCATGGCGCTGGCCCCGCTCAAGCAGCAGCCGTTGGCGTACGAGCTGGCGCT
GGTGCTGGCGAAGACCCTCGCGTCGCTGAAGCTGCTGGAGCTGTTGCAAAAGCTCGCGGCCACGA
ACAAGGTGACCAAGTCCGGGTCGCGGATGCTGGTGGCGCTGAAAC



Found at i:208042 original size:12 final size:12

Alignment explanation


    Indices: 208027--208075  Score: 53
    Period size: 12  Copynumber: 4.1  Consensus size: 12

     208017 AGTACGCTAA

                        
     208027 CCAGCACACCAC
          1 CCAGCACACCAC

                 *  *   
     208039 CCAGCCCATCAC
          1 CCAGCACACCAC

                 *  *   
     208051 CCAGCCCATCAC
          1 CCAGCACACCAC

                   *    
     208063 CCAGCACGCCAC
          1 CCAGCACACCAC

             
     208075 C
          1 C

     208076 TACATGTCGC


Statistics
Matches: 32,  Mismatches: 5, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
  12   32  1.00

ACGTcount: A:0.27, C:0.59, G:0.10, T:0.04


Consensus pattern (12 bp):   
CCAGCACACCAC

Left flanking sequence: Indices 207527 -- 208026
GCGCTGCGGCCAGCGCTGCGGCCGCTGTCGTTCCAGTACCTCGGCGCGGCCATCTCCACCGGGTC
GAACGACCTGCGCCGCCGCTCGCTCATCGGCGGTGGCATGTCGGTGGCGCACTCGCGGGTGCTGT
TGGCCAACCTGCCGCACAAACTGCTGCCGCTGAAGCTGCCGCGGTACCTGCCCAAGAAGCGCAGT
CCCGCCCGGGTGCGTGGAGGAGCCGTGAGAGACGGCGACGGTGCTGTGCGCAACGGAGCTGTGCG
CGATGGCCCGGTGCGCGACATCTACTCTGAGATTATGAGTGCCCAGGCCAAGGGCCAGACAGGCC
CGCAGACCCTGGCGTTTGCTGGGTTCAACCCGACGCCGTTGACGGAGCTGCCGCCTATTAGACAG
CACGGCAGTAGTCAGGCCAACCAGGCCAACAGTCAGGCCAACCAGGCCAACAGTCAGGCCAACAG
CCAGTATGCTAACCAGCACGCTAACCAGGCCAGCCAGTACGCTAA


Right flanking sequence: Indices 208076 -- 208575
TACATGTCGCAGGTGACCCGGGCCCTGGTCCAGTACACCGCCATCGGCGGCGGCCAGCCGCTGCC
CATCAAAGAAACGGACTCGGAAACAGTCCGCGGGCACAAGCTCGCGTACGAGCAGGCCAAGGGCA
TCGCCGCGGCCGCCGGGATCGGGCTGGGCCGCGCACCGGCCGTGGCACAGCTTCCACCGCTCACC
GACGACAACATGGGCCCGCCGGTGGTGGACGAGGTCCCACATGGCGACCTCATGGCGCTGGCCCC
GCTCAAGCAGCAGCCGTTGGCGTACGAGCTGGCGCTGGTGCTGGCGAAGACCCTCGCGTCGCTGA
AGCTGCTGGAGCTGTTGCAAAAGCTCGCGGCCACGAACAAGGTGACCAAGTCCGGGTCGCGGATG
CTGGTGGCGCTGAAACGGCGGCTGCGGGCCCTGGTGGCGCTCAAACGCAACCTGATCACCATGAA
GTTGTTGCTGACGTACGCCAAGCTCGCGGGCGACACCGACTGGGA



Found at i:208862 original size:6 final size:6

Alignment explanation


    Indices: 208851--208875  Score: 50
    Period size: 6  Copynumber: 4.2  Consensus size: 6

     208841 GAGGACAACG

                                         
     208851 ACGACA ACGACA ACGACA ACGACA A
          1 ACGACA ACGACA ACGACA ACGACA A

     208876 AGAAAACAAC


Statistics
Matches: 19,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   19  1.00

ACGTcount: A:0.52, C:0.32, G:0.16, T:0.00


Consensus pattern (6 bp):   
ACGACA

Left flanking sequence: Indices 208351 -- 208850
GTTGGCGTACGAGCTGGCGCTGGTGCTGGCGAAGACCCTCGCGTCGCTGAAGCTGCTGGAGCTGT
TGCAAAAGCTCGCGGCCACGAACAAGGTGACCAAGTCCGGGTCGCGGATGCTGGTGGCGCTGAAA
CGGCGGCTGCGGGCCCTGGTGGCGCTCAAACGCAACCTGATCACCATGAAGTTGTTGCTGACGTA
CGCCAAGCTCGCGGGCGACACCGACTGGGAGTACATGGAGAAGCTGAGCAAGCGGACCCTGGCGA
CGTTTGCCCAGTTGTGCGACAAGATCTTCAACCAGGAGCTCACCGCGGACGACGAGCAGGAGCTC
TTGGACGACGAGGAGCGCCAGGCGCGCGAGTACGAGCAGCTCATGGAGCTGGAGCGCCGCAAGGC
CGAGGCGGAGCTCCGGGCCCGCCGCGAGCTCGAGAAGCACAAGCGCCGCCAGAAACGCCGGCTGT
TGGCGCTGTCGAAAAAGCTCCTGATTCTTGTTCGTGAGGACAACG


Right flanking sequence: Indices 208876 -- 209375
AGAAAACAACTCCGACGTGGAAAAGGACGGTCCTGTGGCCCAGCAAATGCCCAAGAAAATGCCCA
AGCCGCGCGCCAACGCCGCCGCAGACGCCTCCGACCTGTTGTCGCCGGTGGAGCTCGAGCACTTG
CGCGAGGAAACCCGCCGGACGACACCAAACTTGGCGCGGCGCCCGGTGCTGCGCTTGGACCCGTT
GTGGACGGCGTACGGCAACAACAAGCTCGAGCGCGCGAAGGACGCGTTGGACCACGAGCGCGAGG
CCCAGCGGCCCGCGCTGTACGGCGGCAAGCACAACCGCCGGCGGGCGAAGGAGACACGGCCGGCG
CTGGCGGTGGCGCTGACCCGCCGCCGCGGGCTGGACCGCTACCGCAGCCTGGGCCCGCGCTACGA
CGGGCGCGCGTACGACGACGAGTACGAGCTGGACGAGGACCGGTACTACTTTGACGAGCGGGTCG
GCGGGCGGGACGAAGGAGACGAGCGTCGGGTGTCTGGCGGGCGCA



Found at i:209615 original size:13 final size:15

Alignment explanation


    Indices: 209573--209615  Score: 77
    Period size: 15  Copynumber: 2.9  Consensus size: 15

     209563 TGAGGAGGAC

                *          
     209573 GACGGGAGAAGAGAG
          1 GACGCGAGAAGAGAG

                           
     209588 GACGCGAGAAGAGAG
          1 GACGCGAGAAGAGAG

                         
     209603 GACGCGAGAAGAG
          1 GACGCGAGAAGAG

     209616 TGAGTGGGAG


Statistics
Matches: 27,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  15   27  1.00

ACGTcount: A:0.40, C:0.12, G:0.49, T:0.00


Consensus pattern (15 bp):   
GACGCGAGAAGAGAG

Left flanking sequence: Indices 209073 -- 209572
GGACGGCGTACGGCAACAACAAGCTCGAGCGCGCGAAGGACGCGTTGGACCACGAGCGCGAGGCC
CAGCGGCCCGCGCTGTACGGCGGCAAGCACAACCGCCGGCGGGCGAAGGAGACACGGCCGGCGCT
GGCGGTGGCGCTGACCCGCCGCCGCGGGCTGGACCGCTACCGCAGCCTGGGCCCGCGCTACGACG
GGCGCGCGTACGACGACGAGTACGAGCTGGACGAGGACCGGTACTACTTTGACGAGCGGGTCGGC
GGGCGGGACGAAGGAGACGAGCGTCGGGTGTCTGGCGGGCGCAACGGGCGTGACGACAGACGGGT
GTCTTCAGGAGCGCGTCTGGCACGTCTGGGCCGCCGTGGGCACGACGACCGCCGGGTGTCGTCTG
GCGGGCGGCTGACGCGGTCGCGGAGACAGACCAAGTACTACCTGGACCTGGACGACGACACGAAT
TTGGAGGTGATAGACGACACCGAGGACTACAGTTTTGAGGAGGAC


Right flanking sequence: Indices 209616 -- 210115
TGAGTGGGAGAAGACTGGAGGACCGGAGACGGCTGGACAACCGGAGAGTCTCGGAAAACCGGAGA
GTCTCGGAAGACCGCAGAAGACTGGACGACCGCAGACGCTCCGAGGACCACCGAAGACTGGACGA
CGACTACGACCGCTCGTACGACCGGTCCGACCGCACCACCGACCGCCACGACCGCCACAACCTTC
CCAACCTTCCCAACCACACCACCTCCGACCGCACCACCTCCGACAACATCCCGCGCCCGCGGTAC
GACGAGCCCGAGCGCAAGACGCTCATCGCGCTGGTCAACATCCCCAAGGTCACCCGCAAGCTGCG
GTGCTTCACCAACTCCAACAAGCGGTTGCTGGTGTTGCTGATGTACCTGACGAAGGAGCTGTACC
GCGACTTGAACCTGTTCTTGCGCGAGGAGCCCGAGGAGCCCGCGGAGGCCGGCGAGCCCGAGCTC
TTGGAGCCGGAGATCGAGGAGGACGAGGACGAGTTCGACGACTAC



Found at i:209675 original size:18 final size:18

Alignment explanation


    Indices: 209654--209694  Score: 73
    Period size: 18  Copynumber: 2.3  Consensus size: 18

     209644 ACGGCTGGAC

                              
     209654 AACCGGAGAGTCTCGGAA
          1 AACCGGAGAGTCTCGGAA

                              
     209672 AACCGGAGAGTCTCGGAA
          1 AACCGGAGAGTCTCGGAA

            *    
     209690 GACCG
          1 AACCG

     209695 CAGAAGACTG


Statistics
Matches: 22,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  18   22  1.00

ACGTcount: A:0.32, C:0.24, G:0.34, T:0.10


Consensus pattern (18 bp):   
AACCGGAGAGTCTCGGAA

Left flanking sequence: Indices 209154 -- 209653
ACGGCGGCAAGCACAACCGCCGGCGGGCGAAGGAGACACGGCCGGCGCTGGCGGTGGCGCTGACC
CGCCGCCGCGGGCTGGACCGCTACCGCAGCCTGGGCCCGCGCTACGACGGGCGCGCGTACGACGA
CGAGTACGAGCTGGACGAGGACCGGTACTACTTTGACGAGCGGGTCGGCGGGCGGGACGAAGGAG
ACGAGCGTCGGGTGTCTGGCGGGCGCAACGGGCGTGACGACAGACGGGTGTCTTCAGGAGCGCGT
CTGGCACGTCTGGGCCGCCGTGGGCACGACGACCGCCGGGTGTCGTCTGGCGGGCGGCTGACGCG
GTCGCGGAGACAGACCAAGTACTACCTGGACCTGGACGACGACACGAATTTGGAGGTGATAGACG
ACACCGAGGACTACAGTTTTGAGGAGGACGACGGGAGAAGAGAGGACGCGAGAAGAGAGGACGCG
AGAAGAGTGAGTGGGAGAAGACTGGAGGACCGGAGACGGCTGGAC


Right flanking sequence: Indices 209695 -- 210194
CAGAAGACTGGACGACCGCAGACGCTCCGAGGACCACCGAAGACTGGACGACGACTACGACCGCT
CGTACGACCGGTCCGACCGCACCACCGACCGCCACGACCGCCACAACCTTCCCAACCTTCCCAAC
CACACCACCTCCGACCGCACCACCTCCGACAACATCCCGCGCCCGCGGTACGACGAGCCCGAGCG
CAAGACGCTCATCGCGCTGGTCAACATCCCCAAGGTCACCCGCAAGCTGCGGTGCTTCACCAACT
CCAACAAGCGGTTGCTGGTGTTGCTGATGTACCTGACGAAGGAGCTGTACCGCGACTTGAACCTG
TTCTTGCGCGAGGAGCCCGAGGAGCCCGCGGAGGCCGGCGAGCCCGAGCTCTTGGAGCCGGAGAT
CGAGGAGGACGAGGACGAGTTCGACGACTACGACGACGGCTACGGCCGCCGCCCCCACGACGACT
ACGACGACCTGCGCCTCCTGCGCGACCGCCTGCGCTACGACGACG



Found at i:210736 original size:12 final size:12

Alignment explanation


    Indices: 210719--210750  Score: 64
    Period size: 12  Copynumber: 2.7  Consensus size: 12

     210709 GGTGGCCTCG

                        
     210719 GGCGACCGCAAC
          1 GGCGACCGCAAC

                        
     210731 GGCGACCGCAAC
          1 GGCGACCGCAAC

                    
     210743 GGCGACCG
          1 GGCGACCG

     210751 AGTCACCTCA


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   20  1.00

ACGTcount: A:0.22, C:0.41, G:0.38, T:0.00


Consensus pattern (12 bp):   
GGCGACCGCAAC

Left flanking sequence: Indices 210219 -- 210718
GCGACCTGGTGTACCTGACGGCGCTGCGGGTCAACCAGCGCCACGGCCGCAACCCGCGTGGCCCA
CGGCCCTCGTCGCAGTTGCCGCTGTTGCCGCTGACCGGCACCGTGGGCGACGAGATGGACGAGAT
GATCCCCGCCGAGCTGACCCGCCGCGAGCTGGACGACTCCGAGGACTACACCTTTGCCACCACCG
CGCCCAGGCGTCAGCGCGACGCGCCGGGCCGCCCGCAGCTGCCGATCGAGGAGGACGAGCCGCTG
GCGCTGGACGGGCTGGCGGTGTTTGACGCCATCAAGTTGCCCACGGAAAAGCTGAAGACCACCGT
GGACGGCACCATCACCCCGGGCACGCTGAAGAGCACCCACCTGCCCGACGAGCCGAAGCAGACGG
TGATGGGGACGGGCCAGGACCGCCAGTTGGTGCCGCCGTTGCCGACAATGCCGGGCACCATCAGC
TCCAAGGGGGTGGTTCGTGGTCCTGGCGGTGAACGGGTGGCCTCG


Right flanking sequence: Indices 210751 -- 211250
AGTCACCTCAAACGGGCTGGTGGTGCCCAACGGGCTGGCCAACCCGCAGCCGTACCCCAAGGTGC
GCAAGCTGATGTTGTCGCCGCAGGTGCCACCCAACGGGCTCCAGAAGCCCCAGGCAGCGTTCGCC
GCGGCCGTCGAGGGCAGCACCCCGCGGTTGCCGCTGGGCCTGGCGATGGGGCTGCCGGCCACCAA
CGCCACGCTCGTGGCCACCCCGAAGCAGCCGTTGGAGGACACCACCAACACCCAGCCGCCAGCGC
GCCGGTCCGGGCTGAGCTTCTTCCGCAAGCTCTCGTGGGGGCTGAAGAAGACGGTGGACGAGCCC
GCGCGCGCGGTGCTGGAGCCCGCCAAGACCGCTCCGAAGAGCGCGCCCAAGAGCTTCTTCCGGTG
GTTCTCGTCGCACCACCACGAGCCCACGGTGACCAAGGTCGACACCATTTTGCCGCGGGCGGAGA
TGCTGCTGGCGTTGGTGTCGTTGTTGACCCAGTGGGGCCTGTTTG




Done.