Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: scaffold61
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 252135
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Found at i:153 original size:32 final size:31
Alignment explanation
Indices: 110--191 Score: 110
Period size: 32 Copynumber: 2.6 Consensus size: 31
100 AGAGTATATA
* *
110 GAGTGGCTGACCACGGCCACTCTAGTGTAGG
1 GAGTGGCTGACCACGGCCACCCCAGTGTAGG
* *
141 AGGGTGGCTGACCACGGCCACCCCGGTGTAGG
1 -GAGTGGCTGACCACGGCCACCCCAGTGTAGG
*
173 GAATGGCTGACCACGGCCA
1 GAGTGGCTGACCACGGCCA
192 TTCTGAGGGG
Statistics
Matches: 44, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
31 17 0.39
32 27 0.61
ACGTcount: A:0.20, C:0.29, G:0.37, T:0.15
Consensus pattern (31 bp):
GAGTGGCTGACCACGGCCACCCCAGTGTAGG
Left flanking sequence: Indices 1 -- 109
ACAGACACTAGCCACCCCGGTCACTGGACCTCTATGCTACTGTGATGGTAGCATTGAGCCACCCG
GGGTACCCCAGCCATGGCGCCTTGCTGGGTATGTAGAGTATATA
Right flanking sequence: Indices 192 -- 691
TTCTGAGGGGTGGGCCGACAGGTGGCCCCTCCGGTGTAGGAGGGTGGCTACGGCCAGCCCTGAGT
AGGCGGGTGGTCCGACCACGGCCACCGCGGAGTAGGAGGCGGCTACGGCCAGCGCTCTGTAGGCG
GGTGGGCCGGTACGGTCACCCCGATGTAGGAAACGGGGTGGGCCCCCTACGGCCCCTCCGTTTTG
TGACCTAGGGAGAACCCCCTACGGTCACTAAGGTTCATGGTCACCGGGGAGAGCCCCCTACGGTC
AGTCCGTTTTTTCGAAAATCCGGCGATTTTTTCATAAGTCGCTTTATTTTTTGCTTAAAAAATAT
GTCATTTCGATCTTGAGGTGCATAGTAGTAATCCAGTCTTAGTGTTTGGGAAGCATTTGGGGTAT
GCGTGGATTGCCTTTCTGATAATAGTATTGTTTCCAGATTATCACTATTGAAATAATGTTTCTTA
TAAAAAGTAAACTAAGAATAAAAATTTTAGAACTGAAGAATTGCT
Found at i:1373 original size:21 final size:21
Alignment explanation
Indices: 1347--1390 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
1337 GCAGGCTTCT
*
1347 CGGGACCGGCGACCTT-AGGGG
1 CGGGACCGGC-AACTTCAGGGG
1368 CGGGACCGGCAACTTCAGGGG
1 CGGGACCGGCAACTTCAGGGG
1389 CG
1 CG
1391 ACCTCAGGGG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 4 0.19
21 17 0.81
ACGTcount: A:0.16, C:0.30, G:0.45, T:0.09
Consensus pattern (21 bp):
CGGGACCGGCAACTTCAGGGG
Left flanking sequence: Indices 847 -- 1346
AGGGATCCAGCAGTGTTAGCATTGCGTGGGCTAACGGCAAGGAATGGTTGCAGATGTTCTACCCG
CGCATCACGAGTAGTGACGTCTTCCAGCCAACTGGCCTGCTCGTCTACAAAGTATTATATGGTCA
ATTTCCGGTAGAATATTTATGTATATACAGCCAGTGTATAGAGGAAAAAAGAATTAAGCCCAACA
ATCTTAACCCATTTACCAAACGAAAGGGTTCAACTTTGGACAAAAAATACCATACCAAGTCAATC
TTGGAAAACGAAACGGAGAAATCAGAAGTGTAACCTTCAAAGATTACATGAAGAGGATTGGGGGA
GGGTGGTCTTACAAGAGCAAACCGACAACCACAATGGCGGCGGCAGTCAACTTGGAGACACCCAT
AATCGAGGCAGAGCCCTCGTAGATAGCAGAAATTTCAGGAGAAGGTTTCTCGACGGCAGCAACTT
CAGGCGCCGGCTTCTCGGGGCCAGCAACCTGGGGAGCAGGCTTCT
Right flanking sequence: Indices 1391 -- 1890
ACCTCAGGGGCGGGCTTAACGGGGCCGGCAACCTCAGGAGCGGGACCAGCGGTCTCGGGGGCAAC
CTCGGGGGCAGGGCCAGCCACCTCAGGGGCAGGCTTCTCAGGGCCAGCAACTTCGGGGGCGGGGT
GCTCGGGGCCAGCAACCACGGGGGCAGCGGTGGGGTGGGTCTCAACACCAGCAAGAGTCTTGGTG
ACGACGGTGGTGTGGTCAGCCTCAGGAACAGGGACGTGAGCGGTTTCGACAACCTCACAGAGCTC
ACACTCGGGAGTAGGCAAAAGAGTGACGGTGGTGGTAACCTTGGGGGCGTGCTCGTCGGTGACAG
TCTGAGGGCCGCAGACGTTGGTGTCGTCACAGATCTCGATGGGCTTGGTAACAGTTACGGTGGGC
TTAGGAGCCTCACACTGGTCACCATGGCAAATCACGTAGACAGTCTTTTCAGCAGCCTTGGTGGG
CTCAGGACGGACACACTTGTCAGCCCCGCAGATAACAGTGACGGT
Found at i:1515 original size:30 final size:30
Alignment explanation
Indices: 1464--1547 Score: 96
Period size: 30 Copynumber: 2.8 Consensus size: 30
1454 ACCTCGGGGG
* * *
1464 CAGGGCCAGCCACCTCAGGGGCAGGCTTCT
1 CAGGGCCAGCAACCTCGGGGGCAGGCTGCT
* * *
1494 CAGGGCCAGCAACTTCGGGGGCGGGGTGCT
1 CAGGGCCAGCAACCTCGGGGGCAGGCTGCT
* *
1524 CGGGGCCAGCAACCACGGGGGCAG
1 CAGGGCCAGCAACCTCGGGGGCAG
1548 CGGTGGGGTG
Statistics
Matches: 44, Mismatches: 10, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
30 44 1.00
ACGTcount: A:0.17, C:0.32, G:0.42, T:0.10
Consensus pattern (30 bp):
CAGGGCCAGCAACCTCGGGGGCAGGCTGCT
Left flanking sequence: Indices 964 -- 1463
TATTATATGGTCAATTTCCGGTAGAATATTTATGTATATACAGCCAGTGTATAGAGGAAAAAAGA
ATTAAGCCCAACAATCTTAACCCATTTACCAAACGAAAGGGTTCAACTTTGGACAAAAAATACCA
TACCAAGTCAATCTTGGAAAACGAAACGGAGAAATCAGAAGTGTAACCTTCAAAGATTACATGAA
GAGGATTGGGGGAGGGTGGTCTTACAAGAGCAAACCGACAACCACAATGGCGGCGGCAGTCAACT
TGGAGACACCCATAATCGAGGCAGAGCCCTCGTAGATAGCAGAAATTTCAGGAGAAGGTTTCTCG
ACGGCAGCAACTTCAGGCGCCGGCTTCTCGGGGCCAGCAACCTGGGGAGCAGGCTTCTCGGGACC
GGCGACCTTAGGGGCGGGACCGGCAACTTCAGGGGCGACCTCAGGGGCGGGCTTAACGGGGCCGG
CAACCTCAGGAGCGGGACCAGCGGTCTCGGGGGCAACCTCGGGGG
Right flanking sequence: Indices 1548 -- 2047
CGGTGGGGTGGGTCTCAACACCAGCAAGAGTCTTGGTGACGACGGTGGTGTGGTCAGCCTCAGGA
ACAGGGACGTGAGCGGTTTCGACAACCTCACAGAGCTCACACTCGGGAGTAGGCAAAAGAGTGAC
GGTGGTGGTAACCTTGGGGGCGTGCTCGTCGGTGACAGTCTGAGGGCCGCAGACGTTGGTGTCGT
CACAGATCTCGATGGGCTTGGTAACAGTTACGGTGGGCTTAGGAGCCTCACACTGGTCACCATGG
CAAATCACGTAGACAGTCTTTTCAGCAGCCTTGGTGGGCTCAGGACGGACACACTTGTCAGCCCC
GCAGATAACAGTGACGGTCTCCACGGGTACCTCAGGAACCACGATCTCGGACTCGGCAAGAGGAG
TGGGGCAAGGCTTCAACTCGGTCGTCTCCTTGGTGTGGCAGGCAGCAGCCTCGCAGGTGACGGTC
TGGGTAACGTGGTGGGTCAACTCGACGTAGTGGGTGATCACCTTA
Found at i:2237 original size:15 final size:15
Alignment explanation
Indices: 2214--2607 Score: 263
Period size: 15 Copynumber: 26.3 Consensus size: 15
2204 GAAGGCGAAG
* *
2214 CCTCGGCAGAGGTCT
1 CCTCAGCAGGGGTCT
*
2229 CCTCAGCAGGGG-CAG
1 CCTCAGCAGGGGTC-T
*
2244 ACTCAGCAGGGGTCT
1 CCTCAGCAGGGGTCT
* *
2259 CCTCAGC-GGGGGCAG
1 CCTCAGCAGGGGTC-T
*
2274 ACTCAGCAGGGGTCT
1 CCTCAGCAGGGGTCT
*
2289 CCTCAGCAGGGG-CAG
1 CCTCAGCAGGGGTC-T
*
2304 ACTCAGCAGGGGTCT
1 CCTCAGCAGGGGTCT
*
2319 CCTCAGCAGGGG-CAG
1 CCTCAGCAGGGGTC-T
*
2334 ACTCAGCAGGGGTCT
1 CCTCAGCAGGGGTCT
* *
2349 CCTCAGC-GGGGGCAG
1 CCTCAGCAGGGGTC-T
*
2364 ACTCAGCAGGGGTCT
1 CCTCAGCAGGGGTCT
* *
2379 CCTCAGC-GGGGGCAG
1 CCTCAGCAGGGGTC-T
*
2394 ACTCAGCAGGGGTCT
1 CCTCAGCAGGGGTCT
* *
2409 CCTCAGC-GGGGGCAG
1 CCTCAGCAGGGGTC-T
*
2424 ACTCAGCAGGGGTCT
1 CCTCAGCAGGGGTCT
* *
2439 CCTCAGC-GGGGGCAG
1 CCTCAGCAGGGGTC-T
*
2454 ACTCAGCAGGGGTCT
1 CCTCAGCAGGGGTCT
* *
2469 CCTCAGC-GGGGGCAG
1 CCTCAGCAGGGGTC-T
* *
2484 ACTCGGCAGGGGTCT
1 CCTCAGCAGGGGTCT
*
2499 CCTCAGCAGGGG-CAG
1 CCTCAGCAGGGGTC-T
*
2514 ACTCAGCAGGGGTCT
1 CCTCAGCAGGGGTCT
* *
2529 CCTCAGC-GGGGGCAG
1 CCTCAGCAGGGGTC-T
*
2544 ACTCAGCAGGGGTCT
1 CCTCAGCAGGGGTCT
* *
2559 CCTCAGC-GGGGGCAG
1 CCTCAGCAGGGGTC-T
** *
2574 ATTCGGCAGGGGTCT
1 CCTCAGCAGGGGTCT
2589 CCTCAGCAGGGGTCT
1 CCTCAGCAGGGGTCT
2604 CCTC
1 CCTC
2608 GGGGGAGGGG
Statistics
Matches: 283, Mismatches: 72, Indels: 48
0.70 0.18 0.12
Matches are distributed among these distances:
14 44 0.16
15 195 0.69
16 44 0.16
ACGTcount: A:0.17, C:0.30, G:0.39, T:0.14
Consensus pattern (15 bp):
CCTCAGCAGGGGTCT
Left flanking sequence: Indices 1714 -- 2213
AGTCTGAGGGCCGCAGACGTTGGTGTCGTCACAGATCTCGATGGGCTTGGTAACAGTTACGGTGG
GCTTAGGAGCCTCACACTGGTCACCATGGCAAATCACGTAGACAGTCTTTTCAGCAGCCTTGGTG
GGCTCAGGACGGACACACTTGTCAGCCCCGCAGATAACAGTGACGGTCTCCACGGGTACCTCAGG
AACCACGATCTCGGACTCGGCAAGAGGAGTGGGGCAAGGCTTCAACTCGGTCGTCTCCTTGGTGT
GGCAGGCAGCAGCCTCGCAGGTGACGGTCTGGGTAACGTGGTGGGTCAACTCGACGTAGTGGGTG
ATCACCTTACCCTCAGAGGAAGTCTTGGAGACGTGACAAGGCACACCAGTGGTGATGGTCTTAGT
CTTGCAGGCCTTCTCACACTCAACGGTAACGATCTTCTTAGTGATCTGAGTGACGGTCTCAGTTT
CGATCTCAACGGGGGCCAGAGGAGAAGTAGTCACAGAAGGCGAAG
Right flanking sequence: Indices 2608 -- 3107
GGGGGAGGGGGAAGCCTCGGCGTTAATGACGGGAAGCTTGCTGGTACCAATGGGCTGGACAGTAG
ATCTAGTCACTGTAACAGTAGGAGTCTCCACAGTAGTGATGGTAATGGTAGAGCATCCCGATTCC
GAAGCGGAAGTGATGGGAGAGCTGGGAGAAGGGGCAACAGTGGGAGAAGGAGATTCGGAAGAAGA
TGTAGGAACAATGCTGGTCGACGAAGATTCTTCAGAAGGCGAAGGCAGGGCCTCGACAGAAGAAG
AAGTCAAAGAAGACGAAGAAGACGAAGAAGACGACTCAACAGTCAGAGACTCAACAGTCAGAGAA
GAGGACAGGGTGCTAGCAGGGACCTGAACCAACACAGTCTCAGTAATTCCAGTAGTCTGGGGGTG
AGGCAAAGTGGTCACATCGGTGGTGGTACCGGTCCAGGTGGTGGTGATCACCTTCTGGGCGTTAC
CATTACCATAAGGGTCAGAGTCCTTGTACGGATTCCAGCCAACAA
Found at i:2260 original size:30 final size:30
Alignment explanation
Indices: 2219--2600 Score: 683
Period size: 30 Copynumber: 12.7 Consensus size: 30
2209 CGAAGCCTCG
* *
2219 GCAGAGGTCTCCTCAGCAGGGGCAGACTCA
1 GCAGGGGTCTCCTCAGCGGGGGCAGACTCA
2249 GCAGGGGTCTCCTCAGCGGGGGCAGACTCA
1 GCAGGGGTCTCCTCAGCGGGGGCAGACTCA
*
2279 GCAGGGGTCTCCTCAGCAGGGGCAGACTCA
1 GCAGGGGTCTCCTCAGCGGGGGCAGACTCA
*
2309 GCAGGGGTCTCCTCAGCAGGGGCAGACTCA
1 GCAGGGGTCTCCTCAGCGGGGGCAGACTCA
2339 GCAGGGGTCTCCTCAGCGGGGGCAGACTCA
1 GCAGGGGTCTCCTCAGCGGGGGCAGACTCA
2369 GCAGGGGTCTCCTCAGCGGGGGCAGACTCA
1 GCAGGGGTCTCCTCAGCGGGGGCAGACTCA
2399 GCAGGGGTCTCCTCAGCGGGGGCAGACTCA
1 GCAGGGGTCTCCTCAGCGGGGGCAGACTCA
2429 GCAGGGGTCTCCTCAGCGGGGGCAGACTCA
1 GCAGGGGTCTCCTCAGCGGGGGCAGACTCA
*
2459 GCAGGGGTCTCCTCAGCGGGGGCAGACTCG
1 GCAGGGGTCTCCTCAGCGGGGGCAGACTCA
*
2489 GCAGGGGTCTCCTCAGCAGGGGCAGACTCA
1 GCAGGGGTCTCCTCAGCGGGGGCAGACTCA
2519 GCAGGGGTCTCCTCAGCGGGGGCAGACTCA
1 GCAGGGGTCTCCTCAGCGGGGGCAGACTCA
* *
2549 GCAGGGGTCTCCTCAGCGGGGGCAGATTCG
1 GCAGGGGTCTCCTCAGCGGGGGCAGACTCA
*
2579 GCAGGGGTCTCCTCAGCAGGGG
1 GCAGGGGTCTCCTCAGCGGGGG
2601 TCTCCTCGGG
Statistics
Matches: 341, Mismatches: 11, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 341 1.00
ACGTcount: A:0.17, C:0.30, G:0.40, T:0.14
Consensus pattern (30 bp):
GCAGGGGTCTCCTCAGCGGGGGCAGACTCA
Left flanking sequence: Indices 1719 -- 2218
GAGGGCCGCAGACGTTGGTGTCGTCACAGATCTCGATGGGCTTGGTAACAGTTACGGTGGGCTTA
GGAGCCTCACACTGGTCACCATGGCAAATCACGTAGACAGTCTTTTCAGCAGCCTTGGTGGGCTC
AGGACGGACACACTTGTCAGCCCCGCAGATAACAGTGACGGTCTCCACGGGTACCTCAGGAACCA
CGATCTCGGACTCGGCAAGAGGAGTGGGGCAAGGCTTCAACTCGGTCGTCTCCTTGGTGTGGCAG
GCAGCAGCCTCGCAGGTGACGGTCTGGGTAACGTGGTGGGTCAACTCGACGTAGTGGGTGATCAC
CTTACCCTCAGAGGAAGTCTTGGAGACGTGACAAGGCACACCAGTGGTGATGGTCTTAGTCTTGC
AGGCCTTCTCACACTCAACGGTAACGATCTTCTTAGTGATCTGAGTGACGGTCTCAGTTTCGATC
TCAACGGGGGCCAGAGGAGAAGTAGTCACAGAAGGCGAAGCCTCG
Right flanking sequence: Indices 2601 -- 3100
TCTCCTCGGGGGAGGGGGAAGCCTCGGCGTTAATGACGGGAAGCTTGCTGGTACCAATGGGCTGG
ACAGTAGATCTAGTCACTGTAACAGTAGGAGTCTCCACAGTAGTGATGGTAATGGTAGAGCATCC
CGATTCCGAAGCGGAAGTGATGGGAGAGCTGGGAGAAGGGGCAACAGTGGGAGAAGGAGATTCGG
AAGAAGATGTAGGAACAATGCTGGTCGACGAAGATTCTTCAGAAGGCGAAGGCAGGGCCTCGACA
GAAGAAGAAGTCAAAGAAGACGAAGAAGACGAAGAAGACGACTCAACAGTCAGAGACTCAACAGT
CAGAGAAGAGGACAGGGTGCTAGCAGGGACCTGAACCAACACAGTCTCAGTAATTCCAGTAGTCT
GGGGGTGAGGCAAAGTGGTCACATCGGTGGTGGTACCGGTCCAGGTGGTGGTGATCACCTTCTGG
GCGTTACCATTACCATAAGGGTCAGAGTCCTTGTACGGATTCCAG
Found at i:2886 original size:9 final size:9
Alignment explanation
Indices: 2864--2901 Score: 58
Period size: 9 Copynumber: 4.2 Consensus size: 9
2854 CTCGACAGAA
*
2864 GAAGAAGTC
1 GAAGAAGAC
*
2873 AAAGAAGAC
1 GAAGAAGAC
2882 GAAGAAGAC
1 GAAGAAGAC
2891 GAAGAAGAC
1 GAAGAAGAC
2900 GA
1 GA
2902 CTCAACAGTC
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.55, C:0.11, G:0.32, T:0.03
Consensus pattern (9 bp):
GAAGAAGAC
Left flanking sequence: Indices 2364 -- 2863
ACTCAGCAGGGGTCTCCTCAGCGGGGGCAGACTCAGCAGGGGTCTCCTCAGCGGGGGCAGACTCA
GCAGGGGTCTCCTCAGCGGGGGCAGACTCAGCAGGGGTCTCCTCAGCGGGGGCAGACTCGGCAGG
GGTCTCCTCAGCAGGGGCAGACTCAGCAGGGGTCTCCTCAGCGGGGGCAGACTCAGCAGGGGTCT
CCTCAGCGGGGGCAGATTCGGCAGGGGTCTCCTCAGCAGGGGTCTCCTCGGGGGAGGGGGAAGCC
TCGGCGTTAATGACGGGAAGCTTGCTGGTACCAATGGGCTGGACAGTAGATCTAGTCACTGTAAC
AGTAGGAGTCTCCACAGTAGTGATGGTAATGGTAGAGCATCCCGATTCCGAAGCGGAAGTGATGG
GAGAGCTGGGAGAAGGGGCAACAGTGGGAGAAGGAGATTCGGAAGAAGATGTAGGAACAATGCTG
GTCGACGAAGATTCTTCAGAAGGCGAAGGCAGGGCCTCGACAGAA
Right flanking sequence: Indices 2902 -- 3401
CTCAACAGTCAGAGACTCAACAGTCAGAGAAGAGGACAGGGTGCTAGCAGGGACCTGAACCAACA
CAGTCTCAGTAATTCCAGTAGTCTGGGGGTGAGGCAAAGTGGTCACATCGGTGGTGGTACCGGTC
CAGGTGGTGGTGATCACCTTCTGGGCGTTACCATTACCATAAGGGTCAGAGTCCTTGTACGGATT
CCAGCCAACAAACGTTCTTTGACCCTGGGTGCCATATCTACCAGCGCACTTGGCTTTGTTAATGT
AGATAATATGGTCAGCGTTCAGCGAAGTGTAACCCGTGAGCACAGCACGAGCACCCTTGGGCAAG
TCGCCATACTTCCAGGTAATCAATTTGGGAGTACAGGTGAAGCCCAGGGTAACGACGTCAGCAGT
GAGGGGAGCAAACCAAGGGGTCATGCTGGTGGCAAACCCAGCAACCACCTTAGAACAGTCGAAGG
ACGCCTTTTGGGTGTCAAGCTCCATGGACAAAATACCTTCGGTAC
Found at i:2920 original size:15 final size:15
Alignment explanation
Indices: 2900--2931 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
2890 CGAAGAAGAC
2900 GACTCAACAGTCAGA
1 GACTCAACAGTCAGA
2915 GACTCAACAGTCAGA
1 GACTCAACAGTCAGA
2930 GA
1 GA
2932 AGAGGACAGG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.41, C:0.25, G:0.22, T:0.12
Consensus pattern (15 bp):
GACTCAACAGTCAGA
Left flanking sequence: Indices 2400 -- 2899
CAGGGGTCTCCTCAGCGGGGGCAGACTCAGCAGGGGTCTCCTCAGCGGGGGCAGACTCAGCAGGG
GTCTCCTCAGCGGGGGCAGACTCGGCAGGGGTCTCCTCAGCAGGGGCAGACTCAGCAGGGGTCTC
CTCAGCGGGGGCAGACTCAGCAGGGGTCTCCTCAGCGGGGGCAGATTCGGCAGGGGTCTCCTCAG
CAGGGGTCTCCTCGGGGGAGGGGGAAGCCTCGGCGTTAATGACGGGAAGCTTGCTGGTACCAATG
GGCTGGACAGTAGATCTAGTCACTGTAACAGTAGGAGTCTCCACAGTAGTGATGGTAATGGTAGA
GCATCCCGATTCCGAAGCGGAAGTGATGGGAGAGCTGGGAGAAGGGGCAACAGTGGGAGAAGGAG
ATTCGGAAGAAGATGTAGGAACAATGCTGGTCGACGAAGATTCTTCAGAAGGCGAAGGCAGGGCC
TCGACAGAAGAAGAAGTCAAAGAAGACGAAGAAGACGAAGAAGAC
Right flanking sequence: Indices 2932 -- 3431
AGAGGACAGGGTGCTAGCAGGGACCTGAACCAACACAGTCTCAGTAATTCCAGTAGTCTGGGGGT
GAGGCAAAGTGGTCACATCGGTGGTGGTACCGGTCCAGGTGGTGGTGATCACCTTCTGGGCGTTA
CCATTACCATAAGGGTCAGAGTCCTTGTACGGATTCCAGCCAACAAACGTTCTTTGACCCTGGGT
GCCATATCTACCAGCGCACTTGGCTTTGTTAATGTAGATAATATGGTCAGCGTTCAGCGAAGTGT
AACCCGTGAGCACAGCACGAGCACCCTTGGGCAAGTCGCCATACTTCCAGGTAATCAATTTGGGA
GTACAGGTGAAGCCCAGGGTAACGACGTCAGCAGTGAGGGGAGCAAACCAAGGGGTCATGCTGGT
GGCAAACCCAGCAACCACCTTAGAACAGTCGAAGGACGCCTTTTGGGTGTCAAGCTCCATGGACA
AAATACCTTCGGTACCACCCTCGCCGTCACAGTCAAGACCAATCA
Found at i:28134 original size:18 final size:18
Alignment explanation
Indices: 28111--28184 Score: 114
Period size: 18 Copynumber: 4.1 Consensus size: 18
28101 TCCCAACGAC
28111 GCGGT-GCCATCCGAGCTG
1 GCGGTGGCC-TCCGAGCTG
28129 GCGGTGGCCTCCGAGCTG
1 GCGGTGGCCTCCGAGCTG
*
28147 GCGGTGGCCTCCGAACTG
1 GCGGTGGCCTCCGAGCTG
*
28165 GCGGTGGCCACCGAGCTG
1 GCGGTGGCCTCCGAGCTG
28183 GC
1 GC
28185 TGCCCCCGTG
Statistics
Matches: 52, Mismatches: 3, Indels: 2
0.91 0.05 0.04
Matches are distributed among these distances:
18 49 0.94
19 3 0.06
ACGTcount: A:0.09, C:0.34, G:0.42, T:0.15
Consensus pattern (18 bp):
GCGGTGGCCTCCGAGCTG
Left flanking sequence: Indices 27611 -- 28110
GCAGGTGCTCGGCTAAGGCGAGATCGCTGAGACTAGCGTCGGTAATTTCGGTGGCAGTTGCCCAA
TGGAGCAAGAGCGCAAGCCACACCCATCGTAGTGAGGTCATGGTCGCAGATATGCTGGCTGCACC
CGCTCAAAACGGCTTGTGCAGATCTCGGTGCGCGCGCCATCAGTGCCAAATCCGGGATCGGAACC
AGCGACCCCGAGGGCCCTGGACACAAATGGCGCTTCGTATAAAATGATTAAGGTATGTCCGAATA
GCTAGTTCGCTAATGAAATCTGTGTTGTTTTTGGCTGCCCCTGCCGTGGCGTTGCCCACGCTTGT
CGCAACCCTGATCGATACCACCACCTGTGACTCGTGTGTGGTGGTGCCCACGCTGTTCCGCTACA
CCAACTCGTCGTCGGTGGTCACTCTGGCCTCGGTGCCAGAGGTACCGGTGAGCAGTGCTGAGGAA
AACGCTGGCCTTGTTGCCCCTACCGAGACCGAGCTTCCCAACGAC
Right flanking sequence: Indices 28185 -- 28684
TGCCCCCGTGCCCACGGAGCCCGTGTTCAACAACGCCACCCTGGGGGACATCACCGAATATGAAA
CCTTCCAGTCCACCGAGACTGTGTGCTCAGGGTCGGTGTGCGACGTCACTACCAACGAGTACTTG
CGGTCGACGGTGATTACCACCATCGACGGTATCTTGACTACCATTGTCACCGCGTTACCCCAGAC
CACCACCGCGTCCACCCTGGAGCCTCCTGTGGCTGGGGGTGCCGCGCCTGCCGAGTCCGAGTTGA
CCACCTTGACTACCACCAAGGACAACCAGGTCACCGTGCTCACCACCTACGTGCCGCGTCCGTCG
GAAGAGGAAGTAATTTCCTACGTCACCGAGTACGACGACACCACTGAGCAAGTGGTGGTGACCAA
CGTTGAGGAGACGGTGGTCTACATCACCCAGTGCGACAACGGGGTGTGCTCGCAGGTGGCCTCGA
CCTCCAAGGTCACCAAGACCTCTACCGAGGACCACAAAGTTACCA
Found at i:45767 original size:9 final size:9
Alignment explanation
Indices: 45749--45783 Score: 52
Period size: 9 Copynumber: 3.9 Consensus size: 9
45739 TCGAGAACTG
45749 GCACGAGAC
1 GCACGAGAC
*
45758 GCAAGAGAC
1 GCACGAGAC
*
45767 GCGCGAGAC
1 GCACGAGAC
45776 GCACGAGA
1 GCACGAGA
45784 ACTTACACTT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
9 22 1.00
ACGTcount: A:0.34, C:0.29, G:0.37, T:0.00
Consensus pattern (9 bp):
GCACGAGAC
Left flanking sequence: Indices 45249 -- 45748
TATCTGACATCACCAGTTCCAAATGACTGAGGAACACACGTGATCACACTTGAAAACTACGCGAA
AACCCCAGTTCAGACTTACCTTTGCACAACATGACCGATCACAACCAGCGCGATAGCTATCGCGG
GCGCGGGAACAGTGGAAGCACTGGTTACCGTGAGTCTTCACAGGGACGCTATCGAGACCGTGATT
CAGGCTATCACGGACGTGAACGTGGCGGCCGCCGGGAATCCTACCAAGACCGGAACACGCACTCT
GGCCATACTGGAGGAAGCCACGATGGTTACTACGACCGGCCCGCGTACGAGCGTTCTGGAAGCAC
TCTGCGCTATAGTTCCCAGTCTCTGACCCATGACCGCCCTCCGCATCGACGCGAGCATCGAAAGG
ATGATCGCAGAGATAGCCGTGACAGACCTGACCATCACAGACGAGATAGTTACAGAGACAACCAC
AGGGATAGTCACGATCGCCGCGAGTCTCATGACCATCGAGAACTG
Right flanking sequence: Indices 45784 -- 46283
ACTTACACTTCATGAGCGCAACCCACTGGCTCTATCGCAAAAGCCAAGACCCACCGCACCTAAAT
CCAGCAACTCACCAACCGCTCACAATCCCTGGGTTTCACAATTTAGTATTAAGGACCCTAGGCTC
CAAAACAGTTTGGAAAGCTCACAAACCCAGATCCTCGAGCTTAATGCTCGGCTAACTGCCTTAAA
TGAATCCCGCGCAAAAGCCATGAACTCGCTCAACAACTACCAACGTTTGGCAACGAAGGAACAGC
TATCCATCCAACTCCAGAACGACAAGGTGGAAGAATTGGCGCTTATGTAAATATGAAGTATGACT
ATCGACATAATGGAATACTATGCGATTTACGTATGGAGGTGGTGATACACCCCAATGCAGAGAAT
CAAACCGTTTCTTGGGGTTTCTCAGGGTTTCTAGGGGTGTGTCTTGCGCGCAGATTTATGCGGCG
CGCTAGATAACACTTTAATTCTACCATAGCCTCGATCGACATGTA
Found at i:70527 original size:12 final size:12
Alignment explanation
Indices: 70507--70538 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
70497 CAACGACTTT
70507 GCCCAGGCGCAG
1 GCCCAGGCGCAG
*
70519 GCGCAGGCGCAG
1 GCCCAGGCGCAG
70531 GCCCAGGC
1 GCCCAGGC
70539 CCAAGCTCAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.16, C:0.41, G:0.44, T:0.00
Consensus pattern (12 bp):
GCCCAGGCGCAG
Left flanking sequence: Indices 70007 -- 70506
TTGACCTGCTGATTATCACTGATGAGAAAAAGTTGCTCAACCTGAACCTGCGCCGCGAAAGAACC
AAGTTCGGGAATTATAAGGTGTGTCAACGATGTCGTGAAAACGATAAGATTCGTCGCACAAACCT
CGAGAAGATGGGTAACTGCAACAGATGTGCGAAGCAGCTTGACCATGGTGATGTCGGGAAACACA
AGGTGTGCAGCAACTGCCGCCTGCGAAAGAAGAAGCTTCTGCAACTGGGCCCGCTGGGCCGGGAG
TCGCTTCTGGGCCCGCTGGGCGGCCCCGGTATGCCTCACTTGGGCATGGCCGGCAAGCCTGTGCT
CGGTGGAATGCCTCAGCTGATGCACGTTTTGGACAACCTGATGCTTCTGAACATTCCTCACCATT
TACCCCAGCCTACAGAAAACTTGATTGCCGCCGCCCTGGTTGCTGCCGGGGCCGAGGTGATGGGC
CAGGGGCTGTATGTACTGGTACCTCTTACCCAGTACAACGACTTT
Right flanking sequence: Indices 70539 -- 71038
CCAAGCTCAACAACAGTACAGTCACAATCTGGCGTTGGCTGCGGCCCAGCAGCAGCAGTATCTGC
AGCAAATGCAGATGCAGCAACAGGGCATGCACCAACAGAGACCCCAGTGATAGAGTTTGTTTTTT
GTTTAAGTATCAATGTACTATATTTATGTTTATCTACCTGAAATGAGAGCCTACCAGAGACACGT
TGATGGCGCTGCCACGAAGCATGGTTTTGAACACAGTACACTATTATGACCAAGGAAGGAAGGTG
GTGTCTCAACTGCGGTCACCTCGCACCGACTAGTCAAAAGTACATCATCCCATGCTTCTTATCTA
CGTAACGAAGGTGTCTTGAATGCGTCATTAATGAAGGAGCACTCATGGCTCATGTGCAGATGTGA
TTGGCTTTAGAAGAGTATCCTCGAAGCTCACAGAACTCCGTAATCTTCCTATTCACCCCTTTCAA
CAGTTCAATATTCACAGGGTTTTGAGCGCGGACAATCAGGGGCAA
Found at i:74818 original size:9 final size:9
Alignment explanation
Indices: 74806--74837 Score: 64
Period size: 9 Copynumber: 3.6 Consensus size: 9
74796 TTGTTGTGTT
74806 TGCTGGTTC
1 TGCTGGTTC
74815 TGCTGGTTC
1 TGCTGGTTC
74824 TGCTGGTTC
1 TGCTGGTTC
74833 TGCTG
1 TGCTG
74838 TTGACGCATC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 23 1.00
ACGTcount: A:0.00, C:0.22, G:0.34, T:0.44
Consensus pattern (9 bp):
TGCTGGTTC
Left flanking sequence: Indices 74306 -- 74805
TGGGATCTCCAAACGAAGGCAGTGCCGAGGTGATAGCGGGTGATTGAGTCATCGGAGAACCCTGC
GGCATTGGCAGCGGTTGAACCATGGGCAGGGAGTGTTTCTGTGCCACATTACCACCTTGCGCACT
GGGAGTCCCAGCCTGAGCACCACCGGCCTGGTTTTGTTGCTGCTGCTGGGCACGCATCGCCATGA
TTTGGTTCTTCATATCGAGCCCGAGACGTTGGTACTTGTGTTGACGAACCTTGTACTCCACAAGT
TCACGCTCAATCTGTTGCAATTGCTCAGGGGTTGGATTAGCCAGCTTTCGTTGTTCGAGAATAAG
TATGCGCTGTTGAACATCCTGGATGTTGCGACGAATCATGTTGAACAGCTCCATCAGCACCGGAA
GCCGCGTTTGACCTTGTCCACCCTGGGCTGCCTGGGTTTGTCCCCGAACAGCCTGAGCCTGACCA
GGCTGAGATGGGGTCATGACCGAAGCGTCAGGGCTTTGTTGTGTT
Right flanking sequence: Indices 74838 -- 75337
TTGACGCATCCGCAACTGCTGCATCTGCTGTGGGGTCATTTGCATCCCTTGGCCACCCTGCATAC
CTCCCAGCGGTTGCTGGCGCATTTGCATCGATGGGGACTGACCAACAGCCTGTCTTTGCTGCTGT
TGCTGCTGCTGCTGCGGCTGTTGTTGCAGTTGTGGTTGGGCATACTGTTGCTGCAGTTGGCCCTG
GTTCTGGCCAGTCTGACCACCCTGCTGAGCCTGAGCGCGCTGCTGTTGTTGGTATTGCATCAAAA
TCTGACGAATTTTGGCAGCTTGTTGGCGGTGCTTCTGGCGCGCAGCTTCATCAGTCGCTTGTTGG
GCGCGTTGTTCTTCGACTCTCATCAGTTGAATCAATTTAGGAATATGCTGCGCTTGGATGTTAAT
CACTCGCCGGGGGGCTTGCCCTTCGGAGGCTTGACCGGCCCCACCTGCACCAAATTGCCCCCCTC
CATTCATGTTCATGTTACCCTGGTTGTTCATAGGGCCTCTTTGGG
Found at i:90153 original size:27 final size:27
Alignment explanation
Indices: 90123--90188 Score: 78
Period size: 27 Copynumber: 2.4 Consensus size: 27
90113 CACCACCTTG
*
90123 ACCCCAAGTCAGATTACCACCTTTGTT
1 ACCCCAAGACAGATTACCACCTTTGTT
* * *
90150 ACCCCAGGACAGGTTGCCACCTTTGTT
1 ACCCCAAGACAGATTACCACCTTTGTT
* *
90177 GCCCCATGACAG
1 ACCCCAAGACAG
90189 GTTGCCGCCT
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 33 1.00
ACGTcount: A:0.23, C:0.35, G:0.18, T:0.24
Consensus pattern (27 bp):
ACCCCAAGACAGATTACCACCTTTGTT
Left flanking sequence: Indices 89623 -- 90122
GTTTTTCTCGTATTCTACAGTCAGATCTTACGTATCTAAGTACGTAGTTAGCAAATTATATGGAA
AAAAAAAATAACAATCGAATCGGCAACTATACACATATAATAGCCCTCTTCATATGTACATAAGT
CTCGCACTAAGTTAGGAAAACTTTCGTTTTCAATTGATTGATTCATTGGACCATTAAATAAGCTT
AGAAGGTAATCCCTGCAAACGTCTGGAGGATTGAAAACAGAGTAGATTTAAAGCAATCAATCCAT
TTGACCAGACTGCGTAAAGCGAAGTCATCGTAGAAAGCATTCAGACACGAACAGGATAGCACGAG
TCAGGTAACAGCACTGGGAAGGGACTTGTATGGTGATCTACACCGAATCTACTTTCATTTCCGTT
TATATATATTTGTTTGGATTATAAGAGTATAAATACATTTGCAGTCATGAACCCCACGTTGAATT
GTTACCGCGGTCCTTCTTACCCCAAGTCAGGCCACCACCACCTTG
Right flanking sequence: Indices 90189 -- 90688
GTTGCCGCCTTTATTGCCGGATCCCCACGTCAGTCCGCCTCCTTTGTCATTGTTGGCACCCCACG
TCAGTGTGCCACCTTGGTTAGCAGACCCCCAAGTCAGGGTGCCCCCTTGGTTGGAGGCACCCCAT
GTCAGGCTACCACCCTGGTTTCCAGAACCCCAGGTCAGATTGCCACCTGACGCACCCCATGCCAG
CTGGTTGCCACCAGATGCACCCCAAGTGGATTGGTTGCCCGACCCCCAAGCCAGTTTTTCGCCTC
CACCCCACTGTGAAACGTTGCCCAGGGAAAAGGCAGGGGTCCGACCACCACCCGGGTTACCTCCC
CAAGCAGTTCCGCCACCAGCAGCAGGAGTGGCACCTCCGTTCCAAGCCAGTCTGCCGCCCAGAGC
ATAGGCGCGCGAACCTCCTTGTTGTTGCGGCTCCGCGCTTTGGGCAGGTCCGCCAATGAAGCGAA
CGTATGGAATTGCCTGACCTCTAATGAGAACATTGAGCTTGTTCT
Found at i:90189 original size:27 final size:27
Alignment explanation
Indices: 90139--90206 Score: 100
Period size: 27 Copynumber: 2.5 Consensus size: 27
90129 AGTCAGATTA
*
90139 CCACCTTTGTTACCCCAGGACAGGTTG
1 CCACCTTTGTTGCCCCAGGACAGGTTG
*
90166 CCACCTTTGTTGCCCCATGACAGGTTG
1 CCACCTTTGTTGCCCCAGGACAGGTTG
* *
90193 CCGCCTTTATTGCC
1 CCACCTTTGTTGCC
90207 GGATCCCCAC
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 37 1.00
ACGTcount: A:0.15, C:0.35, G:0.21, T:0.29
Consensus pattern (27 bp):
CCACCTTTGTTGCCCCAGGACAGGTTG
Left flanking sequence: Indices 89639 -- 90138
ACAGTCAGATCTTACGTATCTAAGTACGTAGTTAGCAAATTATATGGAAAAAAAAAATAACAATC
GAATCGGCAACTATACACATATAATAGCCCTCTTCATATGTACATAAGTCTCGCACTAAGTTAGG
AAAACTTTCGTTTTCAATTGATTGATTCATTGGACCATTAAATAAGCTTAGAAGGTAATCCCTGC
AAACGTCTGGAGGATTGAAAACAGAGTAGATTTAAAGCAATCAATCCATTTGACCAGACTGCGTA
AAGCGAAGTCATCGTAGAAAGCATTCAGACACGAACAGGATAGCACGAGTCAGGTAACAGCACTG
GGAAGGGACTTGTATGGTGATCTACACCGAATCTACTTTCATTTCCGTTTATATATATTTGTTTG
GATTATAAGAGTATAAATACATTTGCAGTCATGAACCCCACGTTGAATTGTTACCGCGGTCCTTC
TTACCCCAAGTCAGGCCACCACCACCTTGACCCCAAGTCAGATTA
Right flanking sequence: Indices 90207 -- 90706
GGATCCCCACGTCAGTCCGCCTCCTTTGTCATTGTTGGCACCCCACGTCAGTGTGCCACCTTGGT
TAGCAGACCCCCAAGTCAGGGTGCCCCCTTGGTTGGAGGCACCCCATGTCAGGCTACCACCCTGG
TTTCCAGAACCCCAGGTCAGATTGCCACCTGACGCACCCCATGCCAGCTGGTTGCCACCAGATGC
ACCCCAAGTGGATTGGTTGCCCGACCCCCAAGCCAGTTTTTCGCCTCCACCCCACTGTGAAACGT
TGCCCAGGGAAAAGGCAGGGGTCCGACCACCACCCGGGTTACCTCCCCAAGCAGTTCCGCCACCA
GCAGCAGGAGTGGCACCTCCGTTCCAAGCCAGTCTGCCGCCCAGAGCATAGGCGCGCGAACCTCC
TTGTTGTTGCGGCTCCGCGCTTTGGGCAGGTCCGCCAATGAAGCGAACGTATGGAATTGCCTGAC
CTCTAATGAGAACATTGAGCTTGTTCTTGTCCACTTTGATTCGTT
Found at i:90317 original size:33 final size:34
Alignment explanation
Indices: 90243--90338 Score: 97
Period size: 33 Copynumber: 2.9 Consensus size: 34
90233 TGTCATTGTT
* *
90243 GGCACCCCACGTCAGTGTGCCACCTTGGTTAGCA
1 GGCACCCCAAGTCAGGGTGCCACCTTGGTTAGCA
* * *
90277 GAC-CCCCAAGTCAGGGTGCCCCCTTGGTT-GGA
1 GGCACCCCAAGTCAGGGTGCCACCTTGGTTAGCA
* * * *
90309 GGCACCCCATGTCAGGCTACCACCCTGGTT
1 GGCACCCCAAGTCAGGGTGCCACCTTGGTT
90339 TCCAGAACCC
Statistics
Matches: 50, Mismatches: 11, Indels: 3
0.78 0.17 0.05
Matches are distributed among these distances:
32 4 0.08
33 44 0.88
34 2 0.04
ACGTcount: A:0.17, C:0.36, G:0.27, T:0.20
Consensus pattern (34 bp):
GGCACCCCAAGTCAGGGTGCCACCTTGGTTAGCA
Left flanking sequence: Indices 89743 -- 90242
GTACATAAGTCTCGCACTAAGTTAGGAAAACTTTCGTTTTCAATTGATTGATTCATTGGACCATT
AAATAAGCTTAGAAGGTAATCCCTGCAAACGTCTGGAGGATTGAAAACAGAGTAGATTTAAAGCA
ATCAATCCATTTGACCAGACTGCGTAAAGCGAAGTCATCGTAGAAAGCATTCAGACACGAACAGG
ATAGCACGAGTCAGGTAACAGCACTGGGAAGGGACTTGTATGGTGATCTACACCGAATCTACTTT
CATTTCCGTTTATATATATTTGTTTGGATTATAAGAGTATAAATACATTTGCAGTCATGAACCCC
ACGTTGAATTGTTACCGCGGTCCTTCTTACCCCAAGTCAGGCCACCACCACCTTGACCCCAAGTC
AGATTACCACCTTTGTTACCCCAGGACAGGTTGCCACCTTTGTTGCCCCATGACAGGTTGCCGCC
TTTATTGCCGGATCCCCACGTCAGTCCGCCTCCTTTGTCATTGTT
Right flanking sequence: Indices 90339 -- 90838
TCCAGAACCCCAGGTCAGATTGCCACCTGACGCACCCCATGCCAGCTGGTTGCCACCAGATGCAC
CCCAAGTGGATTGGTTGCCCGACCCCCAAGCCAGTTTTTCGCCTCCACCCCACTGTGAAACGTTG
CCCAGGGAAAAGGCAGGGGTCCGACCACCACCCGGGTTACCTCCCCAAGCAGTTCCGCCACCAGC
AGCAGGAGTGGCACCTCCGTTCCAAGCCAGTCTGCCGCCCAGAGCATAGGCGCGCGAACCTCCTT
GTTGTTGCGGCTCCGCGCTTTGGGCAGGTCCGCCAATGAAGCGAACGTATGGAATTGCCTGACCT
CTAATGAGAACATTGAGCTTGTTCTTGTCCACTTTGATTCGTTTCAGTTTAGTATGGAGCTCAAT
CGTGGCGACGGTATCAGTAGAGTCAACCACCTTACCCATCAACCCTTTGTAAACCCCCAGGGTAA
CAGAAACATCCTTCTGAATCAACTTGTCGCGGCCACCTCGGAAAG
Found at i:134388 original size:9 final size:9
Alignment explanation
Indices: 134374--134399 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
134364 TATAAAACTA
134374 AAGCCGCAC
1 AAGCCGCAC
134383 AAGCCGCAC
1 AAGCCGCAC
134392 AAGCCGCA
1 AAGCCGCA
134400 TCTGCACAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.35, C:0.42, G:0.23, T:0.00
Consensus pattern (9 bp):
AAGCCGCAC
Left flanking sequence: Indices 133874 -- 134373
ATCGAGTAACATTAGCTGAGATAAGTCCTCCTCGCAAACGTAAGCGGAGCCCTATGAACTCGCCC
ATAAAGAAACATCAGAAAATTGGCCAAATCCCTCGCCTTAGCTCCGGGCCCCTCTTACTAAAGTC
GGGAACCCAACTGCCAATGTCTCAACTGATCTTACCTCAAATTTCGAGAGACTCGAGATGTCAAG
ATTGGGAAACAGGGCGATGTGAGAATTCAAATTACGCTTTTGATGCCTCGCTTATGTCCACCCCG
ATCAAATGCTCCAATGAAATTGATCATTGGTGGTTTGACGAGCAGTCTTCACCAATGAAAGAGCT
AGCCTTCTCTCAAAGCATCCCGCAATTTTCTGGTCCCGAAGCTCATTCACAACTTTCGGAATCAG
GTCATTTTTTTAGCTCAAGACCACACACCAGAGCAATCGAAGATTACTTCAACCCGAACTTGGAT
CTCTTTTGGGACTAAATAGTCGTATGTCAAATGAATATAAAACTA
Right flanking sequence: Indices 134400 -- 134899
TCTGCACAATCCTGAGGGCGAACAAAAAAATTCAACCAGTTCACCAATCGACGCTGCTATGTTAT
TCTTCTCGTTCTTCAAGACGCTTGTCGATCAGGAGGTGACAGTGGAATTGAAAAACGACATTGAA
ATTAAGGGAACGTTGAAGCTGGTTGATCAATTTTTGAATTTGAAACTCGACAATGTGTCCTGCGC
GAATCAGATAAAGTATCCTCATTTGGGTTCCGTGAAAACATTATTCATTCGGGGCTCCACTGTTC
GATACGTCCACATGAACCCCAACTCCGTGGATTGCACTTTATTACAAGACGCGTCTCGCAGAGAA
GCTATGGTGCAAGCGGGCAAATAGTTCGATAAGAGGGGATGCGTGAAAGCATCATGGGTTATGAC
ATAGCACCTTCAATGGGTATTAAATGGAAGTTAATAAAGGATTTTTTTTTGGGCACCAAAGAAAA
GTTTGCAACGCTAGGCAGATTTCGTTTATGGCTCAAGTGGTGTGG
Found at i:140822 original size:18 final size:18
Alignment explanation
Indices: 140770--140823 Score: 63
Period size: 18 Copynumber: 3.0 Consensus size: 18
140760 TGAGTCGACT
*
140770 TCTTGTCATCGTCCTTCG
1 TCTTGTCATCGTCCTTGG
* *
140788 TCTTGTCATCATTCTTGG
1 TCTTGTCATCGTCCTTGG
* *
140806 TTTTGTCGTCGTCCTTGG
1 TCTTGTCATCGTCCTTGG
140824 ACTTAGACTC
Statistics
Matches: 29, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
18 29 1.00
ACGTcount: A:0.06, C:0.26, G:0.20, T:0.48
Consensus pattern (18 bp):
TCTTGTCATCGTCCTTGG
Left flanking sequence: Indices 140270 -- 140769
GTATCAACAAGGGTCACTTGTACAACAACACCAAGGCTGGCAGAAGAAAGACCTGGAAGAGACAG
AACACTTTGTCTTTGTGGAGATACAGAAAGTAAATGTCTTAACCTTTTGGTTGGGATATTTTCTA
AGCTGCGGTTTAATTTGTATAGGTTATAAACAGCTCTTCATAATTTCGTTAAGACCCAGGTGTTT
CCCTACCATGTCGCACAACTGCTGCCATAGAGTGGATCACGCGTGGAATCATCAAATTTAAAAAT
CCTACTGAATGTTAACTAGGCTCCGTTCCATTAAATCAAATCATTTCTATTCTAGACAATCGTCG
AAATCTCACCAGGAGACTTACATCAACAACAAAGCAACAGCGCCAACCGCAACGCCGTAAGGAGC
GTAGGCACCGGCAGCACCATTGTGAGAGTTCTCAGAGTTGACGGAATTGACAGACATAAGAGCAA
CGTCCGCTTGAGAAAGAACCGACTCCAACGGACTTTGAGTCGACT
Right flanking sequence: Indices 140824 -- 141323
ACTTAGACTCCTTAGGGGCTTCCGTGACTCCAGCACCAGCGGCACCATCGCCATTGGAGTCTTCC
GTTTTGGCAGGGGCATCGCCACCACCACCGTTACCTGTATCAAGTCTCAGGGCCCAAGGCAATTT
CAGAGCGAAACTTTTGAGCTCACCCACGTCAACATTGGAGTCGTCTAACAATGTGGTGTAAGAGT
CATCGGTGTAAGTTTGTACCTGGAAAGCCAACAGAGTAAGCTCCGCAGGTGGGTTGGCAGTAGCT
AAAAAGTCGATGTAAGACTTGGGGTTGGCCTTAAAATCAGTCACCAAAGCAGTCAAGAAGGCAAC
ATCACCTTCGTTAGCAGCCAAAGCCAAGGAGGCAGTCAATGCGAGATACACAGGCAAGTAGAACA
TGACGCGATAGAGTGTTTGGGCGGCGGATGTCTTATTATGTACTTATTATGTACCCACCAGTAAT
TCAGATGCCATTGCCTATTTAGGAAATATCTCTGTGGGGATAAAT
Found at i:150661 original size:11 final size:11
Alignment explanation
Indices: 150645--150679 Score: 61
Period size: 11 Copynumber: 3.1 Consensus size: 11
150635 AAATAAAGTC
150645 TACTTGGGTTT
1 TACTTGGGTTT
150656 TACTTGGGTTTT
1 TACTTGGG-TTT
150668 TACTTGGGTTT
1 TACTTGGGTTT
150679 T
1 T
150680 CCCTGAATTG
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
11 12 0.52
12 11 0.48
ACGTcount: A:0.09, C:0.09, G:0.26, T:0.57
Consensus pattern (11 bp):
TACTTGGGTTT
Left flanking sequence: Indices 150145 -- 150644
CCATAGTTGTGCAGATCTGAGTATATGAATGGCAATGGGAGTACTCGGGAGTTAGTGCGGATAGC
CAGTCGTCAATTGGCGTGTCGCAAGCGTAATAACCTAAGGATCGGGTTAGGGGATCCTCAATGGG
TGGGCAAAGTTCTCAAATATTGGGGCGTGCGCAGCCCAATCATTTGTGCGTAGCGATAGTCGGCA
ACCACGCCTTCACAACTACACCGGCAAAACTAATGAAAGAAGTGTTGGTTTATTCTTTGGAGACA
TCTAAAGTTCTAACTAACTGTTCTCAAAGCTCTCTGGTTTAACTCATTTCTTGTTGTATTGTCAG
TTTCGTCATTGGTCAAGGTTAAGCATATTTTGACAGCGTTGCTATCGTTTGCGAGTGACGTTTTG
CCTCGATCTGGTTCGAAGCGTTTGCTCGCTGAGGGGAAGAATCACAGCCGAGAATACTCAAGTCT
AATAAAAAAGTCAGGGAAAACCCATGTAAAGTCCCAAATAAAGTC
Right flanking sequence: Indices 150680 -- 151179
CCCTGAATTGACCTCTTGAACCTCCTGACGGTTTTACATTTCTACTAGAATTTCAAAGGGAGCAT
GACTAGGTACCATCCAGCTTTTTGGATGTGATGACCTCACCGCTTGCTTTTACCGAAAGAACCAA
GCGTCTAACGCACGACTGAATTTTGTAACTCAGTGCCATTTATTTGTAAGGACCGACTGCCTAAA
TGGGAAGGGTGTAGTGCTGCAAACGACTTTGCGTTTGAAATTTTTCAATCGATCTTATGGAAAGT
GCCTAGATGAATGATATTTTCTAATCGTACATTACACTATGTATACATTTAAGCAGTGGTGGCCT
TCTTGGCAGCCTCAGTGGGGGCAACCTTTCTGTCCTGGTTGAATCTCTTTCTCTGGGGAGGAGTT
CTAATCTTTCTGTCCTGTCTAGATCTGACTCTGACAATTCTGGCGTGAATGGCACACGACACACA
GTAGTGCAACTTGTTGTACAACTTAGGCAAGGCGTACTCCTTGTA
Found at i:150670 original size:12 final size:12
Alignment explanation
Indices: 150645--150679 Score: 63
Period size: 12 Copynumber: 3.0 Consensus size: 12
150635 AAATAAAGTC
150645 TACTTGGG-TTT
1 TACTTGGGTTTT
150656 TACTTGGGTTTT
1 TACTTGGGTTTT
150668 TACTTGGGTTTT
1 TACTTGGGTTTT
150680 CCCTGAATTG
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
11 8 0.35
12 15 0.65
ACGTcount: A:0.09, C:0.09, G:0.26, T:0.57
Consensus pattern (12 bp):
TACTTGGGTTTT
Left flanking sequence: Indices 150145 -- 150644
CCATAGTTGTGCAGATCTGAGTATATGAATGGCAATGGGAGTACTCGGGAGTTAGTGCGGATAGC
CAGTCGTCAATTGGCGTGTCGCAAGCGTAATAACCTAAGGATCGGGTTAGGGGATCCTCAATGGG
TGGGCAAAGTTCTCAAATATTGGGGCGTGCGCAGCCCAATCATTTGTGCGTAGCGATAGTCGGCA
ACCACGCCTTCACAACTACACCGGCAAAACTAATGAAAGAAGTGTTGGTTTATTCTTTGGAGACA
TCTAAAGTTCTAACTAACTGTTCTCAAAGCTCTCTGGTTTAACTCATTTCTTGTTGTATTGTCAG
TTTCGTCATTGGTCAAGGTTAAGCATATTTTGACAGCGTTGCTATCGTTTGCGAGTGACGTTTTG
CCTCGATCTGGTTCGAAGCGTTTGCTCGCTGAGGGGAAGAATCACAGCCGAGAATACTCAAGTCT
AATAAAAAAGTCAGGGAAAACCCATGTAAAGTCCCAAATAAAGTC
Right flanking sequence: Indices 150680 -- 151179
CCCTGAATTGACCTCTTGAACCTCCTGACGGTTTTACATTTCTACTAGAATTTCAAAGGGAGCAT
GACTAGGTACCATCCAGCTTTTTGGATGTGATGACCTCACCGCTTGCTTTTACCGAAAGAACCAA
GCGTCTAACGCACGACTGAATTTTGTAACTCAGTGCCATTTATTTGTAAGGACCGACTGCCTAAA
TGGGAAGGGTGTAGTGCTGCAAACGACTTTGCGTTTGAAATTTTTCAATCGATCTTATGGAAAGT
GCCTAGATGAATGATATTTTCTAATCGTACATTACACTATGTATACATTTAAGCAGTGGTGGCCT
TCTTGGCAGCCTCAGTGGGGGCAACCTTTCTGTCCTGGTTGAATCTCTTTCTCTGGGGAGGAGTT
CTAATCTTTCTGTCCTGTCTAGATCTGACTCTGACAATTCTGGCGTGAATGGCACACGACACACA
GTAGTGCAACTTGTTGTACAACTTAGGCAAGGCGTACTCCTTGTA
Found at i:208646 original size:18 final size:17
Alignment explanation
Indices: 208625--208666 Score: 57
Period size: 18 Copynumber: 2.4 Consensus size: 17
208615 TGCCGCTGAA
208625 CCAGCCGATGCCGATGGG
1 CCAGCCG-TGCCGATGGG
*
208643 CCAGCCCGTGTCGATGGG
1 CCAG-CCGTGCCGATGGG
208661 CCAGCC
1 CCAGCC
208667 AGCGTCGCTT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
17 2 0.09
18 17 0.77
19 3 0.14
ACGTcount: A:0.14, C:0.38, G:0.36, T:0.12
Consensus pattern (17 bp):
CCAGCCGTGCCGATGGG
Left flanking sequence: Indices 208125 -- 208624
GCGTTGGGGCTCCCCACCATGGAGCTGTTGACTCTACCGCTGACGGCGATCGACATCCCGTCGCT
GCTGCCGCAGCCCCGCCCCCGTGTGCGTTCGGGGCTGTTGTTTCTGACCAACCTGATCTGGAACG
ACGGAGCCCCAGGTTCGCTGCCTCAGCTGGTGCGTCTGTTTGAGCCGGATCAGCCGTTTTTGGCG
GTGCCGCTGGATGCTCCTCACCAGCGTAACCGGTCCTACACCACCACCGGTGCCCAAATGCCGCC
CCAGCCCTACTCGTTGTTGGAGCTGATTGGCGGTTCCCGGGTGCTGCCCTTTGCCAGCACTCTGA
ACAAGACCGACGTCAACGCGTTGTTGGACTCGCTCATGCTGAACATCAACGACCCAGGCTACTCT
CCGGCACCCCGGTTGCGGTCACAGACAATTTCGGGCCCGTCGCCGGGGGCCGACTCGTTCATGGC
TCTGCAGTACTACCAGCTGCTGGTGGTGCCCGTGATGCCGCTGAA
Right flanking sequence: Indices 208667 -- 209166
AGCGTCGCTTTCGCAGCCTTCGATGCCGCTCCTTCCCCAGCTCCAACAACCTCCTCAGCCACAGC
AGTCCCAGCTGCAGCCCATGTACCCCCTGCAACCACTGCCTCCCCAGCTCATCGACGACTTTAAT
CTTTCCCAGGTCGCCATCACCACCAACTTTGACAATCCCAACTTGGGCCCCACCAAGCACATTTT
GCTTGACAATTTGCCTCAATTCATCAACCTGGCCAAGCTTTTTCTGATTTTGAACTCGCTGTTGG
GCAACCAGCGCCAATTTGGTGGCATCCGCTCGGTGCGATTGGCTGCAATCAACGCGCTGAAGCTC
GCGTTGGTTGAGTGCTCCAACGTGGACACGGCCATGCTGCTCAAGGCCAGCTTCAACCATGTTGA
GTTTGTACCTGGTGTCGTTCTTTACGTGGCATTTGCCAAGGTTACCGATCTTGATGCCTCTAGCG
GTAACGGTTCTGCTGGAGCTGAGTCTTATGGGGGTCAGTCGGCCC
Found at i:208673 original size:18 final size:18
Alignment explanation
Indices: 208636--208673 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
208626 CAGCCGATGC
* *
208636 CGATGGGCCAGCCCGTGT
1 CGATGGGCCAGCCAGCGT
208654 CGATGGGCCAGCCAGCGT
1 CGATGGGCCAGCCAGCGT
208672 CG
1 CG
208674 CTTTCGCAGC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.13, C:0.34, G:0.39, T:0.13
Consensus pattern (18 bp):
CGATGGGCCAGCCAGCGT
Left flanking sequence: Indices 208136 -- 208635
CCCCACCATGGAGCTGTTGACTCTACCGCTGACGGCGATCGACATCCCGTCGCTGCTGCCGCAGC
CCCGCCCCCGTGTGCGTTCGGGGCTGTTGTTTCTGACCAACCTGATCTGGAACGACGGAGCCCCA
GGTTCGCTGCCTCAGCTGGTGCGTCTGTTTGAGCCGGATCAGCCGTTTTTGGCGGTGCCGCTGGA
TGCTCCTCACCAGCGTAACCGGTCCTACACCACCACCGGTGCCCAAATGCCGCCCCAGCCCTACT
CGTTGTTGGAGCTGATTGGCGGTTCCCGGGTGCTGCCCTTTGCCAGCACTCTGAACAAGACCGAC
GTCAACGCGTTGTTGGACTCGCTCATGCTGAACATCAACGACCCAGGCTACTCTCCGGCACCCCG
GTTGCGGTCACAGACAATTTCGGGCCCGTCGCCGGGGGCCGACTCGTTCATGGCTCTGCAGTACT
ACCAGCTGCTGGTGGTGCCCGTGATGCCGCTGAACCAGCCGATGC
Right flanking sequence: Indices 208674 -- 209173
CTTTCGCAGCCTTCGATGCCGCTCCTTCCCCAGCTCCAACAACCTCCTCAGCCACAGCAGTCCCA
GCTGCAGCCCATGTACCCCCTGCAACCACTGCCTCCCCAGCTCATCGACGACTTTAATCTTTCCC
AGGTCGCCATCACCACCAACTTTGACAATCCCAACTTGGGCCCCACCAAGCACATTTTGCTTGAC
AATTTGCCTCAATTCATCAACCTGGCCAAGCTTTTTCTGATTTTGAACTCGCTGTTGGGCAACCA
GCGCCAATTTGGTGGCATCCGCTCGGTGCGATTGGCTGCAATCAACGCGCTGAAGCTCGCGTTGG
TTGAGTGCTCCAACGTGGACACGGCCATGCTGCTCAAGGCCAGCTTCAACCATGTTGAGTTTGTA
CCTGGTGTCGTTCTTTACGTGGCATTTGCCAAGGTTACCGATCTTGATGCCTCTAGCGGTAACGG
TTCTGCTGGAGCTGAGTCTTATGGGGGTCAGTCGGCCCCACTGAG
Found at i:210776 original size:9 final size:9
Alignment explanation
Indices: 210771--210795 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
210761 ACCGCAGCAC
210771 CAGCAGCCT
1 CAGCAGCCT
210780 CAGCAGCCT
1 CAGCAGCCT
210789 CAGCAGC
1 CAGCAGC
210796 AAAGCCAACA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.24, C:0.44, G:0.24, T:0.08
Consensus pattern (9 bp):
CAGCAGCCT
Left flanking sequence: Indices 210271 -- 210770
ACAAGCTTGCCAACCTCACTATTCTCAAGATAGTGAACAACCGCCTGGACCCGATACTGAAACGC
GCTGTGTTGGATGCTCTTTTCGGGCCTTTTGATCCCAACAGCGACTTTGCATACCCAACGCCCAC
GAGACTTTTGGAATCGATTCTTGCTGAGAGTCATGACCACAACCCTGCTGGCCCCTTGTTCGTCT
ACAAGCTCGTTTCGAACCCAGTGGCGTTGCAGTTGGGTGATGACCCGCGTGTCAATGGTCGCTAT
CTGGAGTTTGCCATCGCGCAAGTGAAGCGTGTGTTGTTGGAGCTGAACATTGCTAACTTGCAGCC
GTATAAGAAGCTCATGGAAGAGGTAGGGTTGCCTATCTCTCGCTTGGGGCGTTCTTCTCTGGTTG
GCGCACCCTCGGGATCTCGTCGTGGCAAACGCATGGGTCAGGGCTCGCGCAATGGGCATAAAGGC
TATGGCAATGGCTATTACGAGCACCAGGGTCAGCAACCGCAGCAC
Right flanking sequence: Indices 210796 -- 211295
AAAGCCAACAGCAATACTCGCAGCAGTATCAGCAGCAACAATACCCGGCGGGCCCGATGCACGTT
TTGTCTCACCAACAACAGCAACAACAACAACCAGTCTACATGCAACAACCCCAACCGCCTCAAGT
GGCGAACGACAAGCAGCCGTCGCAGCAGGACATGGCAGTCATGAAGCAGTTGGAGCAACTTTCGT
TGAGTTCAGCTGCCATGGGGTACAACTCCAATCCTGGTACACCCACCGTGAACAAGCATCCAAGT
CAATTCTGACACTGGGAGAGAGATGAAATGACGAGACACCAAAAGAATAAAAAAGCAAAAAAATA
CGACGGAACGGACAAGTAAATATAGTAAGTAATAGGTAATATGCATTTCAATAGTATACACAATA
AACTCCCATAACCAATCTACTATCATTAAAATAATTTCGTTTATTGCTAGAAAAAACGGGACTTA
CCCGGCAAAATTCAACGCTAAACAAAACCTACACGTCCATAGTGT
Found at i:225393 original size:24 final size:24
Alignment explanation
Indices: 225366--225425 Score: 75
Period size: 24 Copynumber: 2.5 Consensus size: 24
225356 GGGATGATGG
* *
225366 GACAGCGGTCTCGACAGTGGCCTT
1 GACAGCGGTCGCGACAGTGGCCTA
* * *
225390 GACAGAGGACGCGACAGTGGTCTA
1 GACAGCGGTCGCGACAGTGGCCTA
225414 GACAGCGGTCGC
1 GACAGCGGTCGC
225426 AGTTGGCGTC
Statistics
Matches: 29, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
24 29 1.00
ACGTcount: A:0.22, C:0.27, G:0.37, T:0.15
Consensus pattern (24 bp):
GACAGCGGTCGCGACAGTGGCCTA
Left flanking sequence: Indices 224866 -- 225365
CCGCAGGAGTCACCGGCTGCTGGCTCTTGGTGAGGGCAAGCTGTACACAACCGATAAACGACATG
AACAAGTACTCGGTCAGCCGGTTTGTGGCGAGCTCCTGTTTGAACTGAGGATTAAGCATTTTGTT
GTAAAGTTCAAGGAGGGACCGGCGAGTGGCGTCGTCAACCAGGGTATCTTGCTTCACGGCGATGG
TGCGTAATCGCTCTTCGAGGTCTTTGATAGTCGATGATGAGAGCTTGCTGTCCTTGGTAGGTGTG
GCCGGTGTCATCGGAGGTGGGGTGGGAGCAGCCACCACTGTGGGGGCTGTGAACCGGATGTTGTT
GGCGTACTCAAGAACAAGCACTTGAAGCACCGCCATGTAGAGCTCCTGAAGTTCCACCCCATCGT
AGTCGTCGTCGTGCGCCACCACCAGCAGCATCAGATTTGTGTGGCCCGGGATCTCGCTTAACGGA
CGCAGTCCCGGGATCTGCGACACAGGACGCGAGCTGGGATGATGG
Right flanking sequence: Indices 225426 -- 225925
AGTTGGCGTCGGGGCGTGGTTGAGGTTCGTGCCCGGCCATCAGAGGGGTACGCGTCGTAGTCGCC
AGAGACGTGACGACTGTGTGTACCGTTCATGGGTGGAAGGAATGCAAAGGGTGGTCTCGCTTTGA
GCAAGGGAAGAGACCGTGACGTTAATGAATGTACACTGTAGGAAACGTCGGCAGCAGACACCTAA
TGCGGGAACTCGCCACGTTAGGAGACGAGACACACGGAGTAAAAGACGGAAAAGTCGAGGAGTTT
TCGACGGCTTCCAGTAAGCTGACAAGCTGGCACGTGTGTAAAAGGAGTGCTAGGGGTCCCCGGAT
CGCAACCGCTGGTATGTTTGGGTGTCAGGTGGAGAAAACCTGCAACGCGCTGCTGCAGATCAGAT
TAGTGGTTGCCCGCAAAAGTTTAAAATAGGTCACGATGGGTAAGCGCGTGACGCGAGTGCCGATT
GTGAGAGGGTGTACGTAGCTGGAGTGGGTGTAGAGCTGTGCCTAC
Found at i:238056 original size:15 final size:15
Alignment explanation
Indices: 238038--238069 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
238028 GCCGGAGGCG
238038 TCAGCACCAGACTCC
1 TCAGCACCAGACTCC
*
238053 TCAGCACCGGACTCC
1 TCAGCACCAGACTCC
238068 TC
1 TC
238070 GGCGGCAGAG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.22, C:0.47, G:0.16, T:0.16
Consensus pattern (15 bp):
TCAGCACCAGACTCC
Left flanking sequence: Indices 237538 -- 238037
TTCTAGAAGAATAATATAACCGCGCCACAGTTGCCACAGAGAACAATAAGTGAAATAGGTAAACA
TTAGACGAAAGCAACCCAGCGAACCCAGCACTGCCTCTTGTTTTCTTTTCCAGCAAGATGGGCCC
ACGTTGTTGAGCTGCGCATGCTCGCTAGCCCCACGTTTTTACTTTTCCGAGTTTACCGCGCGTCA
CCCCGCCCAGATCGATGCATACCGGGCCTACCCCTTGCAACCTCCATTTATCGTGCTTCAATTTA
TCAAATTAAGTCTTATTAATTATACAGTTTTAAACTTACAACAACAAGGCACCGGCAACAGCGCC
GACGAAAGCCATACCGTAAGTGAAGGGAGCGATAGCGGCGGCACCGGAACCGTCACCGGAACCGT
TGGAGCCGTTACCCTTACCACCACCAGTGGAGTTGGAGCCAGAGCCGCCAACACCGGCGCCGGCA
CCGGACTCGGAAGCACCAGACTCCTCGGCGGCAGAGCCGGAGGCG
Right flanking sequence: Indices 238070 -- 238569
GGCGGCAGAGCCGGAAGCGTCAGCACCAGACTCCTCAGCACCAGACTCCTCAGCATTGGACTCCT
CGGCGGCAGAGCCAGAAGCCTCAGCACCAGACTCCTCGGCGGCGGAGCCAGACTCCTCAGCACCG
GACTCCTCGGCACCGGTAGCGGCGGCGGACTCGGCGCCAGACTCACCAGCACCAGCAGCAGACTC
AACGCCAGAGGCACCGGCCTCACCAAGAGACTCGGCACCAGAGGCACCAGCACCGGCGGCGGAAG
TCACGGCGGCGGCAACATCGGTAGTGTCGTTGTCGTCAGCGCGAGCGAAGGCGGCGATAGCAGAA
ACAGCCAAAACTTGAGTGAACTTCATTGTAGATACTGAATTAAAAAAACCATGAGACTGGTAGCT
TTTTATATTCAAAAACCAGACCCTCCACCACACTCGCCTAAAAATATTATATTTTTTCGGTACTT
CCCCTGTTTTGAGCGTCGTTCATATGCTCAAAAGAGGTAAATTGA
Found at i:238066 original size:51 final size:51
Alignment explanation
Indices: 238004--238120 Score: 216
Period size: 51 Copynumber: 2.3 Consensus size: 51
237994 CGGACTCGGA
*
238004 AGCACCAGACTCCTCGGCGGCAGAGCCGGAGGCGTCAGCACCAGACTCCTC
1 AGCACCAGACTCCTCGGCGGCAGAGCCGGAAGCGTCAGCACCAGACTCCTC
*
238055 AGCACCGGACTCCTCGGCGGCAGAGCCGGAAGCGTCAGCACCAGACTCCTC
1 AGCACCAGACTCCTCGGCGGCAGAGCCGGAAGCGTCAGCACCAGACTCCTC
238106 AGCACCAGACTCCTC
1 AGCACCAGACTCCTC
238121 AGCATTGGAC
Statistics
Matches: 63, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
51 63 1.00
ACGTcount: A:0.22, C:0.40, G:0.27, T:0.10
Consensus pattern (51 bp):
AGCACCAGACTCCTCGGCGGCAGAGCCGGAAGCGTCAGCACCAGACTCCTC
Left flanking sequence: Indices 237504 -- 238003
CCGGTGGCGTGGTTTCGGATAGACGTATTGTCGGTTCTAGAAGAATAATATAACCGCGCCACAGT
TGCCACAGAGAACAATAAGTGAAATAGGTAAACATTAGACGAAAGCAACCCAGCGAACCCAGCAC
TGCCTCTTGTTTTCTTTTCCAGCAAGATGGGCCCACGTTGTTGAGCTGCGCATGCTCGCTAGCCC
CACGTTTTTACTTTTCCGAGTTTACCGCGCGTCACCCCGCCCAGATCGATGCATACCGGGCCTAC
CCCTTGCAACCTCCATTTATCGTGCTTCAATTTATCAAATTAAGTCTTATTAATTATACAGTTTT
AAACTTACAACAACAAGGCACCGGCAACAGCGCCGACGAAAGCCATACCGTAAGTGAAGGGAGCG
ATAGCGGCGGCACCGGAACCGTCACCGGAACCGTTGGAGCCGTTACCCTTACCACCACCAGTGGA
GTTGGAGCCAGAGCCGCCAACACCGGCGCCGGCACCGGACTCGGA
Right flanking sequence: Indices 238121 -- 238620
AGCATTGGACTCCTCGGCGGCAGAGCCAGAAGCCTCAGCACCAGACTCCTCGGCGGCGGAGCCAG
ACTCCTCAGCACCGGACTCCTCGGCACCGGTAGCGGCGGCGGACTCGGCGCCAGACTCACCAGCA
CCAGCAGCAGACTCAACGCCAGAGGCACCGGCCTCACCAAGAGACTCGGCACCAGAGGCACCAGC
ACCGGCGGCGGAAGTCACGGCGGCGGCAACATCGGTAGTGTCGTTGTCGTCAGCGCGAGCGAAGG
CGGCGATAGCAGAAACAGCCAAAACTTGAGTGAACTTCATTGTAGATACTGAATTAAAAAAACCA
TGAGACTGGTAGCTTTTTATATTCAAAAACCAGACCCTCCACCACACTCGCCTAAAAATATTATA
TTTTTTCGGTACTTCCCCTGTTTTGAGCGTCGTTCATATGCTCAAAAGAGGTAAATTGAAAACGC
GTGCAGAAGGCACGGTGGGTCGTGGTCGTGTCGACTGTGGGGTGA
Found at i:238102 original size:36 final size:36
Alignment explanation
Indices: 238051--238210 Score: 170
Period size: 36 Copynumber: 4.6 Consensus size: 36
238041 GCACCAGACT
*
238051 CCTCAGCACCGGACTCCTCGGCGGCAGAGCCGGAAG
1 CCTCAGCACCGGACTCCTCGGCGGCAGAGCCAGAAG
* * * **
238087 CGTCAGCACCAGACTCCT---CAGC--A-CCAGACT
1 CCTCAGCACCGGACTCCTCGGCGGCAGAGCCAGAAG
**
238117 CCTCAGCATTGGACTCCTCGGCGGCAGAGCCAGAAG
1 CCTCAGCACCGGACTCCTCGGCGGCAGAGCCAGAAG
* * **
238153 CCTCAGCACCAGACTCCTCGGCGGCGGAGCCAGACT
1 CCTCAGCACCGGACTCCTCGGCGGCAGAGCCAGAAG
238189 CCTCAGCACCGGACTCCTCGGC
1 CCTCAGCACCGGACTCCTCGGC
238211 ACCGGTAGCG
Statistics
Matches: 98, Mismatches: 20, Indels: 12
0.75 0.15 0.09
Matches are distributed among these distances:
30 18 0.18
31 1 0.01
33 6 0.06
35 1 0.01
36 72 0.73
ACGTcount: A:0.21, C:0.41, G:0.27, T:0.12
Consensus pattern (36 bp):
CCTCAGCACCGGACTCCTCGGCGGCAGAGCCAGAAG
Left flanking sequence: Indices 237551 -- 238050
ATATAACCGCGCCACAGTTGCCACAGAGAACAATAAGTGAAATAGGTAAACATTAGACGAAAGCA
ACCCAGCGAACCCAGCACTGCCTCTTGTTTTCTTTTCCAGCAAGATGGGCCCACGTTGTTGAGCT
GCGCATGCTCGCTAGCCCCACGTTTTTACTTTTCCGAGTTTACCGCGCGTCACCCCGCCCAGATC
GATGCATACCGGGCCTACCCCTTGCAACCTCCATTTATCGTGCTTCAATTTATCAAATTAAGTCT
TATTAATTATACAGTTTTAAACTTACAACAACAAGGCACCGGCAACAGCGCCGACGAAAGCCATA
CCGTAAGTGAAGGGAGCGATAGCGGCGGCACCGGAACCGTCACCGGAACCGTTGGAGCCGTTACC
CTTACCACCACCAGTGGAGTTGGAGCCAGAGCCGCCAACACCGGCGCCGGCACCGGACTCGGAAG
CACCAGACTCCTCGGCGGCAGAGCCGGAGGCGTCAGCACCAGACT
Right flanking sequence: Indices 238211 -- 238710
ACCGGTAGCGGCGGCGGACTCGGCGCCAGACTCACCAGCACCAGCAGCAGACTCAACGCCAGAGG
CACCGGCCTCACCAAGAGACTCGGCACCAGAGGCACCAGCACCGGCGGCGGAAGTCACGGCGGCG
GCAACATCGGTAGTGTCGTTGTCGTCAGCGCGAGCGAAGGCGGCGATAGCAGAAACAGCCAAAAC
TTGAGTGAACTTCATTGTAGATACTGAATTAAAAAAACCATGAGACTGGTAGCTTTTTATATTCA
AAAACCAGACCCTCCACCACACTCGCCTAAAAATATTATATTTTTTCGGTACTTCCCCTGTTTTG
AGCGTCGTTCATATGCTCAAAAGAGGTAAATTGAAAACGCGTGCAGAAGGCACGGTGGGTCGTGG
TCGTGTCGACTGTGGGGTGAAGCGCGGTTTGATCACTCCTGTCGACACGTCTGACAAATATCTGG
TTTTGTTTTCGTATCTGGAACCGAGTATTCCGGCAACATCCTCGG
Found at i:238135 original size:15 final size:15
Alignment explanation
Indices: 238089--238124 Score: 72
Period size: 15 Copynumber: 2.4 Consensus size: 15
238079 GCCGGAAGCG
238089 TCAGCACCAGACTCC
1 TCAGCACCAGACTCC
238104 TCAGCACCAGACTCC
1 TCAGCACCAGACTCC
238119 TCAGCA
1 TCAGCA
238125 TTGGACTCCT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.28, C:0.44, G:0.14, T:0.14
Consensus pattern (15 bp):
TCAGCACCAGACTCC
Left flanking sequence: Indices 237589 -- 238088
GAAATAGGTAAACATTAGACGAAAGCAACCCAGCGAACCCAGCACTGCCTCTTGTTTTCTTTTCC
AGCAAGATGGGCCCACGTTGTTGAGCTGCGCATGCTCGCTAGCCCCACGTTTTTACTTTTCCGAG
TTTACCGCGCGTCACCCCGCCCAGATCGATGCATACCGGGCCTACCCCTTGCAACCTCCATTTAT
CGTGCTTCAATTTATCAAATTAAGTCTTATTAATTATACAGTTTTAAACTTACAACAACAAGGCA
CCGGCAACAGCGCCGACGAAAGCCATACCGTAAGTGAAGGGAGCGATAGCGGCGGCACCGGAACC
GTCACCGGAACCGTTGGAGCCGTTACCCTTACCACCACCAGTGGAGTTGGAGCCAGAGCCGCCAA
CACCGGCGCCGGCACCGGACTCGGAAGCACCAGACTCCTCGGCGGCAGAGCCGGAGGCGTCAGCA
CCAGACTCCTCAGCACCGGACTCCTCGGCGGCAGAGCCGGAAGCG
Right flanking sequence: Indices 238125 -- 238624
TTGGACTCCTCGGCGGCAGAGCCAGAAGCCTCAGCACCAGACTCCTCGGCGGCGGAGCCAGACTC
CTCAGCACCGGACTCCTCGGCACCGGTAGCGGCGGCGGACTCGGCGCCAGACTCACCAGCACCAG
CAGCAGACTCAACGCCAGAGGCACCGGCCTCACCAAGAGACTCGGCACCAGAGGCACCAGCACCG
GCGGCGGAAGTCACGGCGGCGGCAACATCGGTAGTGTCGTTGTCGTCAGCGCGAGCGAAGGCGGC
GATAGCAGAAACAGCCAAAACTTGAGTGAACTTCATTGTAGATACTGAATTAAAAAAACCATGAG
ACTGGTAGCTTTTTATATTCAAAAACCAGACCCTCCACCACACTCGCCTAAAAATATTATATTTT
TTCGGTACTTCCCCTGTTTTGAGCGTCGTTCATATGCTCAAAAGAGGTAAATTGAAAACGCGTGC
AGAAGGCACGGTGGGTCGTGGTCGTGTCGACTGTGGGGTGAAGCG
Found at i:238201 original size:21 final size:21
Alignment explanation
Indices: 238161--238201 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
238151 AGCCTCAGCA
* **
238161 CCAGACTCCTCGGCGGCGGAG
1 CCAGACTCCTCAGCACCGGAG
238182 CCAGACTCCTCAGCACCGGA
1 CCAGACTCCTCAGCACCGGA
238202 CTCCTCGGCA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.20, C:0.41, G:0.29, T:0.10
Consensus pattern (21 bp):
CCAGACTCCTCAGCACCGGAG
Left flanking sequence: Indices 237661 -- 238160
TGGGCCCACGTTGTTGAGCTGCGCATGCTCGCTAGCCCCACGTTTTTACTTTTCCGAGTTTACCG
CGCGTCACCCCGCCCAGATCGATGCATACCGGGCCTACCCCTTGCAACCTCCATTTATCGTGCTT
CAATTTATCAAATTAAGTCTTATTAATTATACAGTTTTAAACTTACAACAACAAGGCACCGGCAA
CAGCGCCGACGAAAGCCATACCGTAAGTGAAGGGAGCGATAGCGGCGGCACCGGAACCGTCACCG
GAACCGTTGGAGCCGTTACCCTTACCACCACCAGTGGAGTTGGAGCCAGAGCCGCCAACACCGGC
GCCGGCACCGGACTCGGAAGCACCAGACTCCTCGGCGGCAGAGCCGGAGGCGTCAGCACCAGACT
CCTCAGCACCGGACTCCTCGGCGGCAGAGCCGGAAGCGTCAGCACCAGACTCCTCAGCACCAGAC
TCCTCAGCATTGGACTCCTCGGCGGCAGAGCCAGAAGCCTCAGCA
Right flanking sequence: Indices 238202 -- 238701
CTCCTCGGCACCGGTAGCGGCGGCGGACTCGGCGCCAGACTCACCAGCACCAGCAGCAGACTCAA
CGCCAGAGGCACCGGCCTCACCAAGAGACTCGGCACCAGAGGCACCAGCACCGGCGGCGGAAGTC
ACGGCGGCGGCAACATCGGTAGTGTCGTTGTCGTCAGCGCGAGCGAAGGCGGCGATAGCAGAAAC
AGCCAAAACTTGAGTGAACTTCATTGTAGATACTGAATTAAAAAAACCATGAGACTGGTAGCTTT
TTATATTCAAAAACCAGACCCTCCACCACACTCGCCTAAAAATATTATATTTTTTCGGTACTTCC
CCTGTTTTGAGCGTCGTTCATATGCTCAAAAGAGGTAAATTGAAAACGCGTGCAGAAGGCACGGT
GGGTCGTGGTCGTGTCGACTGTGGGGTGAAGCGCGGTTTGATCACTCCTGTCGACACGTCTGACA
AATATCTGGTTTTGTTTTCGTATCTGGAACCGAGTATTCCGGCAA
Found at i:238205 original size:15 final size:15
Alignment explanation
Indices: 238185--238215 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
238175 GGCGGAGCCA
238185 GACTCCTCAGCACCG
1 GACTCCTCAGCACCG
*
238200 GACTCCTCGGCACCG
1 GACTCCTCAGCACCG
238215 G
1 G
238216 TAGCGGCGGC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.16, C:0.45, G:0.26, T:0.13
Consensus pattern (15 bp):
GACTCCTCAGCACCG
Left flanking sequence: Indices 237685 -- 238184
ATGCTCGCTAGCCCCACGTTTTTACTTTTCCGAGTTTACCGCGCGTCACCCCGCCCAGATCGATG
CATACCGGGCCTACCCCTTGCAACCTCCATTTATCGTGCTTCAATTTATCAAATTAAGTCTTATT
AATTATACAGTTTTAAACTTACAACAACAAGGCACCGGCAACAGCGCCGACGAAAGCCATACCGT
AAGTGAAGGGAGCGATAGCGGCGGCACCGGAACCGTCACCGGAACCGTTGGAGCCGTTACCCTTA
CCACCACCAGTGGAGTTGGAGCCAGAGCCGCCAACACCGGCGCCGGCACCGGACTCGGAAGCACC
AGACTCCTCGGCGGCAGAGCCGGAGGCGTCAGCACCAGACTCCTCAGCACCGGACTCCTCGGCGG
CAGAGCCGGAAGCGTCAGCACCAGACTCCTCAGCACCAGACTCCTCAGCATTGGACTCCTCGGCG
GCAGAGCCAGAAGCCTCAGCACCAGACTCCTCGGCGGCGGAGCCA
Right flanking sequence: Indices 238216 -- 238715
TAGCGGCGGCGGACTCGGCGCCAGACTCACCAGCACCAGCAGCAGACTCAACGCCAGAGGCACCG
GCCTCACCAAGAGACTCGGCACCAGAGGCACCAGCACCGGCGGCGGAAGTCACGGCGGCGGCAAC
ATCGGTAGTGTCGTTGTCGTCAGCGCGAGCGAAGGCGGCGATAGCAGAAACAGCCAAAACTTGAG
TGAACTTCATTGTAGATACTGAATTAAAAAAACCATGAGACTGGTAGCTTTTTATATTCAAAAAC
CAGACCCTCCACCACACTCGCCTAAAAATATTATATTTTTTCGGTACTTCCCCTGTTTTGAGCGT
CGTTCATATGCTCAAAAGAGGTAAATTGAAAACGCGTGCAGAAGGCACGGTGGGTCGTGGTCGTG
TCGACTGTGGGGTGAAGCGCGGTTTGATCACTCCTGTCGACACGTCTGACAAATATCTGGTTTTG
TTTTCGTATCTGGAACCGAGTATTCCGGCAACATCCTCGGGACCC
Found at i:242930 original size:9 final size:9
Alignment explanation
Indices: 242918--242959 Score: 57
Period size: 9 Copynumber: 4.7 Consensus size: 9
242908 CGGTGGTATG
242918 CGTGGTGGT
1 CGTGGTGGT
*
242927 CGTGGCGGT
1 CGTGGTGGT
*
242936 CGTGGCGGT
1 CGTGGTGGT
*
242945 CGTGGTGGC
1 CGTGGTGGT
242954 CGTGGT
1 CGTGGT
242960 CGTGGTGCCA
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 30 1.00
ACGTcount: A:0.00, C:0.19, G:0.55, T:0.26
Consensus pattern (9 bp):
CGTGGTGGT
Left flanking sequence: Indices 242418 -- 242917
TCAAACAAGAGCAACAGCAGCCCCCGAATCAGTCGCCATTCCAGTTCCAACACAAGCAGGAACAA
CAACAACAACAGCCCCAAGGCCAACAGCCAGTGCTGCAACAGCAGCTTCAACAAGCGGATGCTGA
AATCGCCAAGTTGAAGCAGATGAACGCTGCTGCCGATGCGGGCCAGCCGGGTCCCATCACCGATG
ACGAAAAGCGAGACATCGATTCGAGACTGGTGTACGTGGGGAACGTCGACTACGAGGCCGGCCCC
GTCGAGTTGCAACAAATCTTCTCCGCGGTTGGTGTAGTCCAGCGTGTCACCATCTTGACTAACAA
AGCCACTGGGCAGCCCAAAGGGTTTGCTTATTTGGAGTTCGCCGAGCCCTCGAGCGTGGGACGTG
CTGTCCAGGAGTTGGACGGCACAATGTTGCGGGATCGTGCTCTCAAGGTGAACGCGAAGCGTACG
AACATTCCTGGCATCTCCACCACCAACCGCGGTCGCGGTGGTATG
Right flanking sequence: Indices 242960 -- 243459
CGTGGTGCCATGCGTGGCCGTGGCCGTTTCCAGCCCTACTAAGGTTTCATTAATATTGTATTATA
AATTATTACGATTCTGACTTTCATGAAAGGTTGTATTCTACTTGGAGGCGCTCTTGGCAGCTTGT
GTACGAGCGTAGGTGTCAGCAACTAACTTCAGCATGGCTTTTTTGCCGTCGTCACGTTCAAGACC
CATCACCACCCCGCGTACGTCGCCCTCCTTCTGGCTCTGGTCCATTTTATACTTGCATTGCCACT
CCCCGATCTCAATCTCTAACCCAATAATAGCTTTCTTCATGATCGAGGTGTACTTTTCCGGCGCA
TCACTCACCTTCCAGGGGGTAGCCCGGCTCTTCTCCTCTTGGGTCGTGAGGGACTCAAGTGCGTG
GTTCAAAAAGTCCAGTGTGTCCACGACACGAGAGGTGCCCTTGATGTGAGCTGACGCAAAGCACC
AAGTCGGGACTGCTTTATGCGTCGCAGGCTTCGTCTCTTCATACC
Found at i:252052 original size:58 final size:58
Alignment explanation
Indices: 251981--252129 Score: 257
Period size: 58 Copynumber: 2.6 Consensus size: 58
251971 GTGACCGTAC
251981 CGGCCCACCCGCCGGGATGGCCGTGGTCAGCCATCCCCTACACCGGGGTAGCCGTGGT
1 CGGCCCACCCGCCGGGATGGCCGTGGTCAGCCATCCCCTACACCGGGGTAGCCGTGGT
252039 CGGCCTC-CCCGCCGGGATGGCCGTGGTCAGCCATCCCCTACACCGGGGTAGCCGTGGT
1 CGGCC-CACCCGCCGGGATGGCCGTGGTCAGCCATCCCCTACACCGGGGTAGCCGTGGT
*
252097 CGGCCCACCC-CTCAGGATGGCCGTGGTCAGCCA
1 CGGCCCACCCGC-CGGGATGGCCGTGGTCAGCCA
252130 CCCTCC
Statistics
Matches: 87, Mismatches: 1, Indels: 6
0.93 0.01 0.06
Matches are distributed among these distances:
57 2 0.02
58 84 0.97
59 1 0.01
ACGTcount: A:0.12, C:0.40, G:0.34, T:0.14
Consensus pattern (58 bp):
CGGCCCACCCGCCGGGATGGCCGTGGTCAGCCATCCCCTACACCGGGGTAGCCGTGGT
Left flanking sequence: Indices 251481 -- 251980
TTGAATTCGAACCCTTAACCTTGGAGCGTGGATTGATCACCCCCACCGTCAAGTTGAAGCGCCCT
GCTTGTAAGGAGTTCTTCAAGGACGTTTTAGAGGACCGTTACACCGAGGGCTCGTTGATTCGAAA
CGGCAAGTTGTAAAAATTTATTTGGTTTAATTAAAGAGTGTAGAGATCTTTTCGATGTAGCAATC
TGGACCAGAAGGAAACGTCTTTTCAAGGTTAAATAACCGGAATGAAATTTCAAATCCCCCTAAAA
AACTCACTCGTACGGCCAGTGGCTTATGCTCATGCACCTCAAGCTCGAAATGACATATTTTTTGA
GCGGAAAATTAAGCGACTGTTGAAAAAATGGCCGAAAATTCAAAAAGACGGGCTGACCGTAGGGG
GCTCTCCCCGGTGATGACGAACCGATGTGACCGTAGGGGGTTCTCCCTAGGTCACAAAACGGAGG
GGCCGTAGGGGGCCCACCCCGTTTCCTACATCGGGGTGACCGTAC
Right flanking sequence: Indices 252130 -- 252135
CCCTCC
Found at i:252061 original size:27 final size:29
Alignment explanation
Indices: 251992--252129 Score: 117
Period size: 31 Copynumber: 4.8 Consensus size: 29
251982 GGCCCACCCG
251992 CCGGGATGGCCGTGGTCAGCCATCCCCTACA
1 CCGGGATGGCCGTGGTCAGCCATCCCC--CA
* * * *
252023 CCGGGGTAGCCGTGGTCGGCC-T-CCCCG
1 CCGGGATGGCCGTGGTCAGCCATCCCCCA
252050 CCGGGATGGCCGTGGTCAGCCATCCCCTACA
1 CCGGGATGGCCGTGGTCAGCCATCCCC--CA
* * *
252081 CCGGGGTAGCCGTGGTCGGCCCA-CCCCTCA
1 CCGGGATGGCCGTGGTCAG-CCATCCCC-CA
252111 ---GGATGGCCGTGGTCAGCCA
1 CCGGGATGGCCGTGGTCAGCCA
252130 CCCTCC
Statistics
Matches: 87, Mismatches: 15, Indels: 15
0.74 0.13 0.13
Matches are distributed among these distances:
26 3 0.03
27 32 0.37
28 1 0.01
29 6 0.07
30 3 0.03
31 39 0.45
32 3 0.03
ACGTcount: A:0.12, C:0.38, G:0.34, T:0.15
Consensus pattern (29 bp):
CCGGGATGGCCGTGGTCAGCCATCCCCCA
Left flanking sequence: Indices 251492 -- 251991
CCCTTAACCTTGGAGCGTGGATTGATCACCCCCACCGTCAAGTTGAAGCGCCCTGCTTGTAAGGA
GTTCTTCAAGGACGTTTTAGAGGACCGTTACACCGAGGGCTCGTTGATTCGAAACGGCAAGTTGT
AAAAATTTATTTGGTTTAATTAAAGAGTGTAGAGATCTTTTCGATGTAGCAATCTGGACCAGAAG
GAAACGTCTTTTCAAGGTTAAATAACCGGAATGAAATTTCAAATCCCCCTAAAAAACTCACTCGT
ACGGCCAGTGGCTTATGCTCATGCACCTCAAGCTCGAAATGACATATTTTTTGAGCGGAAAATTA
AGCGACTGTTGAAAAAATGGCCGAAAATTCAAAAAGACGGGCTGACCGTAGGGGGCTCTCCCCGG
TGATGACGAACCGATGTGACCGTAGGGGGTTCTCCCTAGGTCACAAAACGGAGGGGCCGTAGGGG
GCCCACCCCGTTTCCTACATCGGGGTGACCGTACCGGCCCACCCG
Right flanking sequence: Indices 252130 -- 252135
CCCTCC
Found at i:252108 original size:31 final size:31
Alignment explanation
Indices: 252000--252097 Score: 132
Period size: 31 Copynumber: 3.3 Consensus size: 31
251990 CGCCGGGATG
252000 GCCGTGGTCAGCCATCCCCTACACCGGGGTA
1 GCCGTGGTCAGCCATCCCCTACACCGGGGTA
* * * *
252031 GCCGTGGTCGGCC-T-CCC--CGCCGGGATG
1 GCCGTGGTCAGCCATCCCCTACACCGGGGTA
252058 GCCGTGGTCAGCCATCCCCTACACCGGGGTA
1 GCCGTGGTCAGCCATCCCCTACACCGGGGTA
252089 GCCGTGGTC
1 GCCGTGGTC
252098 GGCCCACCCC
Statistics
Matches: 55, Mismatches: 8, Indels: 8
0.77 0.11 0.11
Matches are distributed among these distances:
27 19 0.35
28 1 0.02
29 6 0.11
30 1 0.02
31 28 0.51
ACGTcount: A:0.11, C:0.39, G:0.34, T:0.16
Consensus pattern (31 bp):
GCCGTGGTCAGCCATCCCCTACACCGGGGTA
Left flanking sequence: Indices 251500 -- 251999
CTTGGAGCGTGGATTGATCACCCCCACCGTCAAGTTGAAGCGCCCTGCTTGTAAGGAGTTCTTCA
AGGACGTTTTAGAGGACCGTTACACCGAGGGCTCGTTGATTCGAAACGGCAAGTTGTAAAAATTT
ATTTGGTTTAATTAAAGAGTGTAGAGATCTTTTCGATGTAGCAATCTGGACCAGAAGGAAACGTC
TTTTCAAGGTTAAATAACCGGAATGAAATTTCAAATCCCCCTAAAAAACTCACTCGTACGGCCAG
TGGCTTATGCTCATGCACCTCAAGCTCGAAATGACATATTTTTTGAGCGGAAAATTAAGCGACTG
TTGAAAAAATGGCCGAAAATTCAAAAAGACGGGCTGACCGTAGGGGGCTCTCCCCGGTGATGACG
AACCGATGTGACCGTAGGGGGTTCTCCCTAGGTCACAAAACGGAGGGGCCGTAGGGGGCCCACCC
CGTTTCCTACATCGGGGTGACCGTACCGGCCCACCCGCCGGGATG
Right flanking sequence: Indices 252098 -- 252135
GGCCCACCCCTCAGGATGGCCGTGGTCAGCCACCCTCC
Done.