Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: scaffold15
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 331204
ACGTcount: A:0.22, C:0.28, G:0.28, T:0.22
Warning! 1 characters in sequence are not A, C, G, or T
File 1 of 2
Found at i:4614 original size:16 final size:17
Alignment explanation
Indices: 4593--4624 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
4583 GGCCCGCACG
4593 CCACCGTGCCG-GGCCT
1 CCACCGTGCCGCGGCCT
4609 CCACCGTGCCGCGGCC
1 CCACCGTGCCGCGGCC
4625 AACCGCAGCT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.06, C:0.53, G:0.31, T:0.09
Consensus pattern (17 bp):
CCACCGTGCCGCGGCCT
Left flanking sequence: Indices 4093 -- 4592
TTATTGGATTAGTGAGTTCGCGGTACTGGTAGGCATGGACGAGAGACGTAGCGTGAGTATGCGGG
TGGGGAACTGGACAAGTGTTGAGCAAATGTCGGGCGGAGATTACCCAAGATATTGACGATATCCA
GACAGAAAGGCTGGGCCAGTTCGCCAACTGACAAGTGGGCCCCCTCCGCCCAAGGCGTCCGCGTA
ACACCATCCCCGCCTATTGTATATCTCCGGTCTCACAACCGCTCGCTTACAATGCCTCGGCATAT
GAAGCACGCACGGTAGCAAGGTGGAGCCTGGCATCAGACGTGAGTCTGCGCTTCGCCTGCCGAAT
CGGCACCAGTGTCCTACAGCGGCCACGAGGGCACATGGAAATTAAACATGGTATTAGGTGTACTA
AGTGAATATACGTGGACGCCGGCGCCCACCGTGGAAGTAAACAAATGCCCGGGTAATCGTGGGCC
GCTATGGCCCGGGGAGTCTCCCTCGTGCCGTGGTCGGCCCGCACG
Right flanking sequence: Indices 4625 -- 5124
AACCGCAGCTACCCCACACTCAGAACGGGTGGTAGGCAAGGGTGTCGAGGAGCTGCAGCATGAGC
ACCACCGCCACTTCGACAAAGAAAATCGCTAGCCCCAACACGTATTGCCACATGACGTCGTCGGC
AACAATTAGCGTTGTTATGGCCCAGGGGGGGCTGGCACGGCTGGTTTTAGCCCTGACCGCGGCCA
TATGCACACCGGACTATTCTTCAACGCGACTTAGGAATTTCTCCACTCCCTTAACCGTTTTGGGA
ATTTTTTCGTTCCAACAACATGGCGAGATTCAAGTTGGGCAAGAAGAATAAACGAGACGACGCCA
GCATCACCTCCAACAACACCATGCCGCTGGTGATGACCGACGACTTTGCCTACAAGACCAATGGC
CGGCTGCTGGGCCACGGGTTCCAGCCGGTGCACGAGCAAGCCCTGATTGCCGACTCGGTGCCCCC
GAGCGTGATCAGCGACTTGCACCCCAACAACTCGAAGTTTGGCCA
Found at i:8427 original size:18 final size:18
Alignment explanation
Indices: 8385--8427 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
8375 TTGTCGACGG
* *
8385 CGACGCCACCGATGGCGC
1 CGACGGCACCGACGGCGC
8403 C-AGCGGCACCGACGGCGC
1 CGA-CGGCACCGACGGCGC
8421 CGACGGC
1 CGACGGC
8428 GGCGCGGTGG
Statistics
Matches: 21, Mismatches: 2, Indels: 4
0.78 0.07 0.15
Matches are distributed among these distances:
17 1 0.05
18 19 0.90
19 1 0.05
ACGTcount: A:0.16, C:0.44, G:0.37, T:0.02
Consensus pattern (18 bp):
CGACGGCACCGACGGCGC
Left flanking sequence: Indices 7885 -- 8384
GCACTATAATATGAAGATCAAGGACTTGGAGGCCGACCTCTACATCCTCAAGCAGGAGCGCGACC
TGCTCAAGGACAACGTGACCCTGTTGCAAAAACAGTTGTACTTGGCGCAGGCGGAGTAGCTATGT
ATCCCTAATGTATGTTTTCGTGTTTGAACCGGGGCTCGTGTGCTATGTATCATATGGTACCGGTA
CCACTGTAGGGCGGGAGCAGGGTGAACTCTTCCTCCTGGAAAAAGTTGTACGGCTGTTGCTGCTC
CTCCAACAACTCGTCGTTGATGGGCGACACCACGTGGTCCTCGTCCGACTCCTCCATGAGCACCG
GATGCGGGTCCTCGGGCGCCAGCGGCATGAGCGCCGCCTCCTGGTCGCGGAGCCGCTGTTTCTCG
TCGGTGGCGGTGGTTTGGTACGCGGGCACCGCCGGTGGCGGCGGCGGCGGGGTGCCAGGAGGCGC
CGCCGCCTGCGGAGACGCTGCTGGAAGCGAGGGGTTTGTCGACGG
Right flanking sequence: Indices 8428 -- 8927
GGCGCGGTGGAGATGGGCCCGGCTAGCGCCGCCGCGGCGGCGGCGGTGGCCGCGGGCGCGCGTTC
CGACGGGGTGGTGGGCGGGGTGGCCAGGGTGCGGTGGGTGCCGATCACCACCTCTTGTGTCAACT
GGAGGAAGCGTTTTGAGCGCTTGAATTTGTCGGTGTTGACATACGGCTGGGTGATCTCGGCCAGC
TTGCCCGATAGATTGATGAGCACCTCGATAAAGTACTGGAACAGCACGAGAGGACACCCGACGAT
GGTGGGGAACACGTCGGCGGGGATGCGGATGTTGGACGACACCTCGGCCTGGAACGACCCGGGGT
CGACGTAGAGCGGGAGCACCACCTGGTGGAGGTCCTTGCGGAACAGCTCCAAGAACCCCTCGGTG
GCGTTGTCGAGGCGGCACACCCGGACAAACGTGACAATGATCCCGTTCAGGTCCTGGAGCAGCCG
CAAGTGGCGGATCAGAATGGTGAGGGGGATGGTTTCGCCGCGGAT
Found at i:19530 original size:123 final size:123
Alignment explanation
Indices: 19311--19550 Score: 437
Period size: 123 Copynumber: 2.0 Consensus size: 123
19301 CCGGCGGGAT
*
19311 GGCCGACGGTGGCCACCCCTCTATATACTTTATATACCCAGCAAGGCGCCATGGCTGGGGTACCC
1 GGCCGACGGTGGCCACCCCTCTATATACTCTATATACCCAGCAAGGCGCCATGGCTGGGGTACCC
*
19376 CGGGTGGCCCAATGCTACCATCACAGTAGCATAGAGG-TCCAGTGACCTGGGTAGGGTG
66 CGGGTGGCCCAATGCTACCATCACAGTAGCATAGAGGCT-CAGTGACCAGGGTAGGGTG
19434 GGCCGACGGTGGCCACCCCTCTATATACTCTATATACCCAGCAAGGCGCCATGGCTGGGGTACCC
1 GGCCGACGGTGGCCACCCCTCTATATACTCTATATACCCAGCAAGGCGCCATGGCTGGGGTACCC
*
19499 CGGGTGGCTCAATGCTACCATCACAGTAGCATAGAGGCTCAGTGACCAGGGT
66 CGGGTGGCCCAATGCTACCATCACAGTAGCATAGAGGCTCAGTGACCAGGGT
19551 GGCTAGTGTC
Statistics
Matches: 113, Mismatches: 3, Indels: 2
0.96 0.03 0.02
Matches are distributed among these distances:
123 112 0.99
124 1 0.01
ACGTcount: A:0.22, C:0.30, G:0.29, T:0.19
Consensus pattern (123 bp):
GGCCGACGGTGGCCACCCCTCTATATACTCTATATACCCAGCAAGGCGCCATGGCTGGGGTACCC
CGGGTGGCCCAATGCTACCATCACAGTAGCATAGAGGCTCAGTGACCAGGGTAGGGTG
Left flanking sequence: Indices 18811 -- 19310
GAACCGGAACGTAATATTTAAATCCCCCTAAAAAGTTCACTCTAAGGGCCAGTGGCTTATGCTCA
TGCACCTCAAGACCAAAATGACATATTTTTTAAGCAAAAAATTAAGCGACATTTGAAAAAATCCC
CGGATTTTCAAAAAAACGGACTGACCGTAGGGGGCTCTCCCCGGTGACCATGAACCGTAGTGACC
GTAGGGGGTTCTCCCTAGGTCACAAAACGGAGGGGCCGTAGGGGGCCCACCCCGTTTCCTACATC
GGGGTGACCGTACTGGCCCACCCGCCTACAGAGCGCTGGCCGTAGCCGCCTCCTACTGCGCGGTG
GCCGTGGTCGGCCCACCCGCCTACTCAGGGCTGGCCTTAGCCACCCTCCTACACCGGAGGGGCCA
CCTATTGGCCCACCCCTCAGGATGGCCGTGGTCAACCATCCCCTACACCGGGGTGGCCGTGGTCA
GCCACCCTTCTACCCCGGAGTGGTCGTCGGCCCACCCGGCGGGAT
Right flanking sequence: Indices 19551 -- 20050
GGCTAGTGTCTGTTAGTAGTAGGCTGTGGCTGAGTGGGTGGTGGCTGGTGCCCCGCATACTTACT
CCGAATGGTGGAGGCTGTTGGAAGTTGTAGATAAAAAAAATCAAAATCTGGGGGGAGCACCCATA
TTTATATCTCAGCGGCTGGGCTGTGGGGCGGGTAACGCTCTGTAGACAGGAGAGCGGGGAACGAT
ATTAACGGCATGTCAACTAGTAATCGGCACCCAAACAATGGGTGCCGATCGTTAATTTACGAGCA
ATTGAGCCCGGGGAAGTTGGTATGAATAGCTAATGGTATAAAACACTGGTCTACATGCTCAGTAA
CCCTGCGCTCTGTCTGTAGCGCGTTTAATTTAGACTCGAAGTGTAGACGCTGCATGACGCGCCTC
GGGATGCGCGATCTCCCTAGGATCCGCCTGTATCTTGAAAAATGAGGATGGGTAGTTGAGAATGC
CCCCCAGTTTTACCCTTATTAGTAGGAACGCCACAACCCAAAGCG
Found at i:23984 original size:15 final size:15
Alignment explanation
Indices: 23964--24006 Score: 86
Period size: 15 Copynumber: 2.9 Consensus size: 15
23954 CGGCCACCAA
23964 GCAACCGCTGGCAGT
1 GCAACCGCTGGCAGT
23979 GCAACCGCTGGCAGT
1 GCAACCGCTGGCAGT
23994 GCAACCGCTGGCA
1 GCAACCGCTGGCA
24007 ACCAGGCAGC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 28 1.00
ACGTcount: A:0.21, C:0.35, G:0.33, T:0.12
Consensus pattern (15 bp):
GCAACCGCTGGCAGT
Left flanking sequence: Indices 23464 -- 23963
AGCGCAAGGGTGCCCACCGGCGCAGAAAGCTTCCCCAGTTCATCCCCCAGCACGACTTGAAGGTG
TTGGAGAGTGTGCGAAAAAACGCCTATCGGTTGGACCTCCTGCTCAGCATGTGTGGGTTCCGTGT
GGGGTGGGCGGGAGTCATTGGGCTCATTCCGTGGGTGGGGGACCTCATTGCGTTGTTCTTGTCGA
TGCAGAACTTGAAGCGGGCCGAGAAGATCGAGGGCGGGTTACCGGCAGAGTTGCGGACGAAGATG
ATGGGCAACATCATGTTTGACTTTGGCATTGGGCTCATCCCGATTGTCGGTGACCTCTGTAACAT
AGCCTACAAGTGTAACCTGCGGAACTTTATTCTTTTGGAAAAGTACTTGGTGCAAAAGTACAGCA
ACTCGCTTCCGGTGTCCCAGAAGCCGGATGAGCTGTTTTTCGATAAGCGCAACGGGAAGGGGACT
GCAGGCGCCGCGGGCAACCAGGCAGCCACGGGCCACGGCCACCAA
Right flanking sequence: Indices 24007 -- 24506
ACCAGGCAGCCGCCAACGTTGGCCACCCCACCGACTCCAAACCACCACTCCCCACACGCTAACCG
TGGTTAGCCTCCTCACCACACCCACTGAACCGTGCTAATTTGTGTATAAAACGTAATACTAATCT
ATAGTGAATCATCCGCCTGCGGTATCAAACACCTAGCTACACCCGGGCAAACCCCGCCTCCACCG
CGGCTAGCCGGGCACGGAAGTCGGCCACAAACTCGTAGAGCTGGTCCAACTTGACAAACTCGCCC
TCCAACTCGTCGCACCGCTTTTCTAGCCCCGCTATCTCGTCCATCGTCTCAAACACCTTGAGCTG
GCTGCCCAAGTAGTCTTCCTCGATCGATTGCTGCTTGAGCACCACCGCGCGCTCGGTGTCCTCGA
TGAGCCCGGCTATGCGGTCGCGGATCTTGTACATGAGGTAGTCGAAACTCACCAGGAGCCCCTTG
AGCTCGAGGGGATCGTCCATGTTGTCAGGGGTCGTGCGGCTTTTT
Found at i:27247 original size:69 final size:69
Alignment explanation
Indices: 27174--27304 Score: 208
Period size: 69 Copynumber: 1.9 Consensus size: 69
27164 GTCGAGCAGC
27174 GCGAGGCTCACCACGTTCTTGGCGTCACGCTTGTCGTTTTCGTTGAGGTGGCCCAACTCCTCGAG
1 GCGAGGCTCACCACGTTCTTGGCGTCACGCTTGTCGTTTTCGTTGAGGTGGCCCAACTCCTCGAG
27239 GTGG
66 GTGG
* * * * * *
27243 GCGAGGTTGACGACGTTCTTGGCGTCGCGTTTTTCGTTTTCGTTGAGGTGGCCCAACTCCTC
1 GCGAGGCTCACCACGTTCTTGGCGTCACGCTTGTCGTTTTCGTTGAGGTGGCCCAACTCCTC
27305 CAACTTGGAG
Statistics
Matches: 56, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
69 56 1.00
ACGTcount: A:0.11, C:0.27, G:0.31, T:0.31
Consensus pattern (69 bp):
GCGAGGCTCACCACGTTCTTGGCGTCACGCTTGTCGTTTTCGTTGAGGTGGCCCAACTCCTCGAG
GTGG
Left flanking sequence: Indices 26674 -- 27173
CGACGTTGGCGGCAGCGATGGCGTCGGCGTCGGGGCCGCTAACCTCGCGCGGGAACTCCCACGGC
TTCTTCGACATCTTGGACACCGCGTCGTCGGTGGGCGCCACAAGCAAAAGCGACTGGTCCTGCTG
CTCCGTCAACTTGGCCACGTCGGCGTTGTCGCGGATGTAGCCAGTAAACACCGAGATCAGGCGCA
TCTGGGGCAAGATCAGCTCCAACACCTTGCCGTCGACAAGCACCTGCTGGCGCTTGAGGTTATGC
AACAGCTTGGCCACGTCGGCAAGCAGCGGCTCGTCACGGTCGCGGAGCTCTTCGAGGCTCAACTC
CACCACGTTCTTGGCGTCGCGCTTGTCGTTGAGCTCGAGCTTGAGGTCGGCCAAGTTGACTACGT
GCTTGCGCTTGTGGTTCTTTTTCTCGTCCAACGTGAACTTGAAGTCGGCCAAGTTGACGATGTTC
TTGGCGTCGCGCTTGCCGTTGAGGTGCTTCAAGTCGTCGAGCAGC
Right flanking sequence: Indices 27305 -- 27804
CAACTTGGAGAGGTCCACCACGTTTTTGCGCTTGTCGTTGCTGTTGAGCTTGCCCAACGCCTCGA
GCTTTGAAATGTCCACCACGTTCTTGCGCTTTTCGTTCTCGTTGAGGTTGCCCAACTCCTCGAGC
TTCGAGATGTCCACCACGTTCTTGGCGTCGCGCTTGCCGCGCGAGTCGTCCAAGTCAAACGAAAG
GTCGCTCAAGCTCACCACGTTCTTGGCCTCGCGCTTGCAGTGCGAGATGGCCTCCGCTAACAGCA
GCCACTTGTCGTTGCGCCCGAGGAGCTTCTCGAGGTTGGCAAACGAGTAGTCGAGCCCGGAGCCG
TCAAACAACTGCTGCATGCCCTTCTGCACCTTCATCTGGGTCAGATAGGCCCCCGCAGCCGCCGT
CACCTCGCCGGCAGACACCTTTTCGTCGCCGCTGCGGTGGCGGTTGACATCCTCGAGCACAAGGT
CCATGGCCAAAGCGATTTGCTCGATGTTGACGTAGTTGACGTCGT
Found at i:27318 original size:69 final size:69
Alignment explanation
Indices: 27186--27318 Score: 194
Period size: 69 Copynumber: 1.9 Consensus size: 69
27176 GAGGCTCACC
* ** *
27186 ACGTTCTTGGCGTCACGCTTGTCGTTTTCGTTGAGGTGGCCCAACTCCTCGAGGTGGGCGAGGTT
1 ACGTTCTTGGCGTCACGCTTGTCGTTTTCGTTGAGGTGGCCCAACTCCTCCAACTGGGAGAGGTT
27251 GACG
66 GACG
* * * *
27255 ACGTTCTTGGCGTCGCGTTTTTCGTTTTCGTTGAGGTGGCCCAACTCCTCCAACTTGGAGAGGT
1 ACGTTCTTGGCGTCACGCTTGTCGTTTTCGTTGAGGTGGCCCAACTCCTCCAACTGGGAGAGGT
27319 CCACCACGTT
Statistics
Matches: 56, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
69 56 1.00
ACGTcount: A:0.12, C:0.25, G:0.32, T:0.32
Consensus pattern (69 bp):
ACGTTCTTGGCGTCACGCTTGTCGTTTTCGTTGAGGTGGCCCAACTCCTCCAACTGGGAGAGGTT
GACG
Left flanking sequence: Indices 26686 -- 27185
CAGCGATGGCGTCGGCGTCGGGGCCGCTAACCTCGCGCGGGAACTCCCACGGCTTCTTCGACATC
TTGGACACCGCGTCGTCGGTGGGCGCCACAAGCAAAAGCGACTGGTCCTGCTGCTCCGTCAACTT
GGCCACGTCGGCGTTGTCGCGGATGTAGCCAGTAAACACCGAGATCAGGCGCATCTGGGGCAAGA
TCAGCTCCAACACCTTGCCGTCGACAAGCACCTGCTGGCGCTTGAGGTTATGCAACAGCTTGGCC
ACGTCGGCAAGCAGCGGCTCGTCACGGTCGCGGAGCTCTTCGAGGCTCAACTCCACCACGTTCTT
GGCGTCGCGCTTGTCGTTGAGCTCGAGCTTGAGGTCGGCCAAGTTGACTACGTGCTTGCGCTTGT
GGTTCTTTTTCTCGTCCAACGTGAACTTGAAGTCGGCCAAGTTGACGATGTTCTTGGCGTCGCGC
TTGCCGTTGAGGTGCTTCAAGTCGTCGAGCAGCGCGAGGCTCACC
Right flanking sequence: Indices 27319 -- 27818
CCACCACGTTTTTGCGCTTGTCGTTGCTGTTGAGCTTGCCCAACGCCTCGAGCTTTGAAATGTCC
ACCACGTTCTTGCGCTTTTCGTTCTCGTTGAGGTTGCCCAACTCCTCGAGCTTCGAGATGTCCAC
CACGTTCTTGGCGTCGCGCTTGCCGCGCGAGTCGTCCAAGTCAAACGAAAGGTCGCTCAAGCTCA
CCACGTTCTTGGCCTCGCGCTTGCAGTGCGAGATGGCCTCCGCTAACAGCAGCCACTTGTCGTTG
CGCCCGAGGAGCTTCTCGAGGTTGGCAAACGAGTAGTCGAGCCCGGAGCCGTCAAACAACTGCTG
CATGCCCTTCTGCACCTTCATCTGGGTCAGATAGGCCCCCGCAGCCGCCGTCACCTCGCCGGCAG
ACACCTTTTCGTCGCCGCTGCGGTGGCGGTTGACATCCTCGAGCACAAGGTCCATGGCCAAAGCG
ATTTGCTCGATGTTGACGTAGTTGACGTCGTCCTTGGGGATGAGG
Found at i:27328 original size:69 final size:69
Alignment explanation
Indices: 27182--27470 Score: 271
Period size: 63 Copynumber: 4.4 Consensus size: 69
27172 GCGCGAGGCT
* * * *
27182 CACCACGTTCTTGGCGTCACGCTTGTCGTTTTCGTTGAGGTGGCCCAACTCCTCGAGGTGGGCGA
1 CACCACGTTCTTGGCGTCGCGCTTGTCGTTTTCGTTGAGGTGGCCCAACTCCTCGAGCTTGGAGA
*
27247 GGTT
66 GGTC
* * * * * *
27251 GACGACGTTCTTGGCGTCGCGTTTTTCGTTTTCGTTGAGGTGGCCCAACTCCTCCAACTTGGAGA
1 CACCACGTTCTTGGCGTCGCGCTTGTCGTTTTCGTTGAGGTGGCCCAACTCCTCGAGCTTGGAGA
27316 GGTC
66 GGTC
* * * * * *
27320 CACCACGTT-TT----T-GCGCTTGTCG-TTGCTGTTGAGCTTGCCCAACGCCTCGAGCTTTGAA
1 CACCACGTTCTTGGCGTCGCGCTTGTCGTTTTC-GTTGAGGTGGCCCAACTCCTCGAGCTTGGAG
*
27378 ATGTC
65 AGGTC
* * * *
27383 CACCACGTTC-T----T-GCGCTTTTCGTTCTCGTTGAGGTTGCCCAACTCCTCGAGCTTCGAGA
1 CACCACGTTCTTGGCGTCGCGCTTGTCGTTTTCGTTGAGGTGGCCCAACTCCTCGAGCTTGGAGA
*
27442 TGTC
66 GGTC
27446 CACCACGTTCTTGGCGTCGCGCTTG
1 CACCACGTTCTTGGCGTCGCGCTTG
27471 CCGCGCGAGT
Statistics
Matches: 179, Mismatches: 32, Indels: 18
0.78 0.14 0.08
Matches are distributed among these distances:
62 3 0.02
63 98 0.55
64 4 0.02
68 3 0.02
69 71 0.40
ACGTcount: A:0.12, C:0.29, G:0.27, T:0.31
Consensus pattern (69 bp):
CACCACGTTCTTGGCGTCGCGCTTGTCGTTTTCGTTGAGGTGGCCCAACTCCTCGAGCTTGGAGA
GGTC
Left flanking sequence: Indices 26682 -- 27181
GCGGCAGCGATGGCGTCGGCGTCGGGGCCGCTAACCTCGCGCGGGAACTCCCACGGCTTCTTCGA
CATCTTGGACACCGCGTCGTCGGTGGGCGCCACAAGCAAAAGCGACTGGTCCTGCTGCTCCGTCA
ACTTGGCCACGTCGGCGTTGTCGCGGATGTAGCCAGTAAACACCGAGATCAGGCGCATCTGGGGC
AAGATCAGCTCCAACACCTTGCCGTCGACAAGCACCTGCTGGCGCTTGAGGTTATGCAACAGCTT
GGCCACGTCGGCAAGCAGCGGCTCGTCACGGTCGCGGAGCTCTTCGAGGCTCAACTCCACCACGT
TCTTGGCGTCGCGCTTGTCGTTGAGCTCGAGCTTGAGGTCGGCCAAGTTGACTACGTGCTTGCGC
TTGTGGTTCTTTTTCTCGTCCAACGTGAACTTGAAGTCGGCCAAGTTGACGATGTTCTTGGCGTC
GCGCTTGCCGTTGAGGTGCTTCAAGTCGTCGAGCAGCGCGAGGCT
Right flanking sequence: Indices 27471 -- 27970
CCGCGCGAGTCGTCCAAGTCAAACGAAAGGTCGCTCAAGCTCACCACGTTCTTGGCCTCGCGCTT
GCAGTGCGAGATGGCCTCCGCTAACAGCAGCCACTTGTCGTTGCGCCCGAGGAGCTTCTCGAGGT
TGGCAAACGAGTAGTCGAGCCCGGAGCCGTCAAACAACTGCTGCATGCCCTTCTGCACCTTCATC
TGGGTCAGATAGGCCCCCGCAGCCGCCGTCACCTCGCCGGCAGACACCTTTTCGTCGCCGCTGCG
GTGGCGGTTGACATCCTCGAGCACAAGGTCCATGGCCAAAGCGATTTGCTCGATGTTGACGTAGT
TGACGTCGTCCTTGGGGATGAGGTTGTAGCGCATCGCGTAGTCCCAGTCCTCGGTCAGCACCGCC
GGCTTCCCGTCTCGCGAGAGCTGGCTGTTCAACCGCTCGTGGAAGGTGGCCACGGGGATCTCGAT
CGAGTCATCCCAGGGCTGGGCCAAGAGCGCCCGGATATCGACCAC
Found at i:28365 original size:16 final size:16
Alignment explanation
Indices: 28344--28375 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
28334 GCGATCTAAC
28344 TCTGGCCAGATTTGAG
1 TCTGGCCAGATTTGAG
28360 TCTGGCCAGATTTGAG
1 TCTGGCCAGATTTGAG
28376 ATTTGATTCT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.19, C:0.19, G:0.31, T:0.31
Consensus pattern (16 bp):
TCTGGCCAGATTTGAG
Left flanking sequence: Indices 27844 -- 28343
CCTCGGTCAGCACCGCCGGCTTCCCGTCTCGCGAGAGCTGGCTGTTCAACCGCTCGTGGAAGGTG
GCCACGGGGATCTCGATCGAGTCATCCCAGGGCTGGGCCAAGAGCGCCCGGATATCGACCACGTT
TTTCGCCGCGGCCGTGATTGCAAATAACACCAGCGTGAGCCAAACCAACTTCATTGCTTCGATAG
TCGTGATCAAACGATGCACAAAATTCGTTTATCAGGCGCGTCCTGCACCGACCGCGAAAGGCCAC
GCCCGGGTGTTTTGACGGGGCACGGAATGTGTAGATCAGGGGCTAGAGCAGAGTGGTAGGGGTAG
GCCTACTCGACGGGTGTCACTTGTCTGGGGTGCCACACAATTCGTTATCGTAACACGTCTTCGGG
TGCGTCTCCGCACAATCAAGGGATATGCAAGGGGGTCATACAATAGGATGCGACAGGACGTCAGC
GCTAACGATCGTTGCGATGCCAGCTCGGCCATTCTGCGATCTAAC
Right flanking sequence: Indices 28376 -- 28875
ATTTGATTCTGCCCAGATCTGGTTCTGCTCAGATTTGATTCTGCTTTCTGCTCAGCTCTGATTCA
GCCCACATCGATCCGGTGTTCGTCTCATTCTACACGGTATAAAGAGTGGTTAACATCCATGCAAT
GGAGTCTACCTCGTGGCATTAAGGTCGTTACGGTAATTGCGGTGCTCGAGACTTCGCAAAAGTCT
GTTGCGCCGCTCTATAAGGTTTTTGATCGAGCGAGCCTTCTCGGGGGAGATCCGGCGCTCCACCG
ACTCCGGGAGCCGGTAGACGCGGTTTCTGGCCCGGTACTCGATCTGCTTGCGCATGATGTCCCGT
TTTCGCTTGAGGGTCAACACGTGCTGGCGGTGGTTTTCCTCGATCATCAACAACCGCATCCGGAC
CGACTCAGAAAAGTCGGACTGGGCGCTCTTCATATCCAGGTTGGGGACGAGCCCAAACACCGGCT
TGGACACAAGGACATTTTTGAGCTTGGGGATGTCGCGCGTGTACT
Found at i:28420 original size:16 final size:16
Alignment explanation
Indices: 28374--28420 Score: 67
Period size: 16 Copynumber: 2.9 Consensus size: 16
28364 GCCAGATTTG
*
28374 AGATTTGATTCTGCCC
1 AGATTTGATTCTGCTC
* *
28390 AGATCTGGTTCTGCTC
1 AGATTTGATTCTGCTC
28406 AGATTTGATTCTGCT
1 AGATTTGATTCTGCT
28421 TTCTGCTCAG
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
16 26 1.00
ACGTcount: A:0.17, C:0.21, G:0.21, T:0.40
Consensus pattern (16 bp):
AGATTTGATTCTGCTC
Left flanking sequence: Indices 27874 -- 28373
GCGAGAGCTGGCTGTTCAACCGCTCGTGGAAGGTGGCCACGGGGATCTCGATCGAGTCATCCCAG
GGCTGGGCCAAGAGCGCCCGGATATCGACCACGTTTTTCGCCGCGGCCGTGATTGCAAATAACAC
CAGCGTGAGCCAAACCAACTTCATTGCTTCGATAGTCGTGATCAAACGATGCACAAAATTCGTTT
ATCAGGCGCGTCCTGCACCGACCGCGAAAGGCCACGCCCGGGTGTTTTGACGGGGCACGGAATGT
GTAGATCAGGGGCTAGAGCAGAGTGGTAGGGGTAGGCCTACTCGACGGGTGTCACTTGTCTGGGG
TGCCACACAATTCGTTATCGTAACACGTCTTCGGGTGCGTCTCCGCACAATCAAGGGATATGCAA
GGGGGTCATACAATAGGATGCGACAGGACGTCAGCGCTAACGATCGTTGCGATGCCAGCTCGGCC
ATTCTGCGATCTAACTCTGGCCAGATTTGAGTCTGGCCAGATTTG
Right flanking sequence: Indices 28421 -- 28920
TTCTGCTCAGCTCTGATTCAGCCCACATCGATCCGGTGTTCGTCTCATTCTACACGGTATAAAGA
GTGGTTAACATCCATGCAATGGAGTCTACCTCGTGGCATTAAGGTCGTTACGGTAATTGCGGTGC
TCGAGACTTCGCAAAAGTCTGTTGCGCCGCTCTATAAGGTTTTTGATCGAGCGAGCCTTCTCGGG
GGAGATCCGGCGCTCCACCGACTCCGGGAGCCGGTAGACGCGGTTTCTGGCCCGGTACTCGATCT
GCTTGCGCATGATGTCCCGTTTTCGCTTGAGGGTCAACACGTGCTGGCGGTGGTTTTCCTCGATC
ATCAACAACCGCATCCGGACCGACTCAGAAAAGTCGGACTGGGCGCTCTTCATATCCAGGTTGGG
GACGAGCCCAAACACCGGCTTGGACACAAGGACATTTTTGAGCTTGGGGATGTCGCGCGTGTACT
CCGTGAGCTCGTCGAGACACTCGCGGAGAAGCTCGCTCGAGTTCT
Found at i:40465 original size:17 final size:17
Alignment explanation
Indices: 40443--40477 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
40433 ATCCGGTGTT
* *
40443 CGTAAACGGTTTCATTA
1 CGTAAACGATCTCATTA
40460 CGTAAACGATCTCATTA
1 CGTAAACGATCTCATTA
40477 C
1 C
40478 TATGCTACAG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.31, C:0.23, G:0.14, T:0.31
Consensus pattern (17 bp):
CGTAAACGATCTCATTA
Left flanking sequence: Indices 39943 -- 40442
CCAACTTGACCTCAACCTTGGCCATGGCCAACACATCGGCGGAGGCGGCGAGCGATGAAAGGAAG
GCCTCGACGGTGGACTTGGCACCGGCGGCAGACAACAACCCCATGGAGCCAACCATGAAGTAGGA
GAAGGCGCGGTTCTTACCCTCATCCTTGGACAAGTAGCCCGAGAAGTCGGGCTGCTGGTAAGACG
ACAACACCTTGGAGGTGGTCGTCAAGTTTCTAAGACCAATCCCTCTGTAGGATCTCAAACCTCTG
AGCGCCAAAGACATATTCGCGGATTACTACGGTCAAATTTTTCAACTGGTTGATATGGTGTGTAG
GGGGAGTGCGACCGCGCAGCATGCAGGAGACCAATCCTAAAAGGCACCGTTTTCATTGGCTCAAA
CTCGCGGCGGTGCGCAACCTGCAGCCGCCGCCACGCGGCTTGGATCAGCCCACACGAGACTAAGC
AAACGCCGGTGGCCAAGACACTACACCCGGCGGTTATCCGGTGTT
Right flanking sequence: Indices 40478 -- 40977
TATGCTACAGTGGGGTATCGCGACCCGGGATCACTTGATCCCAAAGCCAGCACTGTCGTTGACCG
CCTGGTCGAGCTTGGCGGCCAACTCGTCGTACGACCGGTAGCTGTACAACTCTAGCTCGTTGAAA
CAGGTGTGTGCGGTGGGGAGCCGGCGGTGGTCGTCGCCGGCGAGCGCGATCTTGAAGCTCATGTT
CTGGATCCCGGTCGCGGGCACCCGATCGGACCCGGTGACAAAGTGGAGGAACTTGCGTTGCTGCG
ACTCGGGGAGCCGGCGCAAGTACCGCCAGAACCACTCGATGAGCGGCGACTGCTCGGCCACCTCC
TTCTTGCCCCACCCGTTGTAGCGGGTGATCGCCTTGAGGGTGTCCACGTCGATCCGGTCGACGCT
TCCACACAACACAAACCGGATCTCCTCCGGCAGGAACAAGTTGAGTGCGTTGCCGCCACACACCT
GCTGGAAGCCGCGGTGGAGCGCACGCACCGCGGGGGCGATGGCGT
Found at i:44136 original size:21 final size:18
Alignment explanation
Indices: 44084--44128 Score: 72
Period size: 18 Copynumber: 2.5 Consensus size: 18
44074 TGCTAAAGGT
*
44084 GCCCAGTTCGGTGGAGTG
1 GCCCAGTTCGATGGAGTG
44102 GCCCAGTTCGATGGAGTG
1 GCCCAGTTCGATGGAGTG
*
44120 GCTCAGTTC
1 GCCCAGTTC
44129 AACGATGGCG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.13, C:0.24, G:0.38, T:0.24
Consensus pattern (18 bp):
GCCCAGTTCGATGGAGTG
Left flanking sequence: Indices 43584 -- 44083
CCACCTCCGACTTTGTGGAGCTCTTGGACTCCGACAGCCTGACCCTGGTGCGCGACCGGGTGGTC
ACAAAGGACATTGCGCGGATGAACTTGTACAAGCACCTGTTCCGCACCGCGGCGGTGGTGGACGA
CCGCGTGGTGGTGGTGGCCGACACCGGTGCCACCTTTGTCGTGCGGATGGAGCACGAGTGCGTGG
GCAACACCACGCGGGTGTTTGGCATCACCGTGGTGCCCGTGGGCGAGCTGGCGGTGCCTGGCGAG
GTGCACCACCTCTCCGGCGCCACCTTTGTCGTGACGTCGGCTATGGGCAACCGCGTGGTCCGCAT
GGGCAAGCACATGACCACGGTGGCAGAGATGGCCGGAACGCCGCCGGTGATAGACATGTGTGTGG
GCCACCACGGGATCTACACGGCCCAGGGCGGGATCGACGCGTGCGAGGTGCGGCGTATCCGCCAC
GACCCGGGTCTACGAGAGGTGTACTCTATGAAGTGTGCTAAAGGT
Right flanking sequence: Indices 44129 -- 44628
AACGATGGCGTGGTGGTGGGGGACAGGGTGTTCCGGCTTGGGGAACCGGGCGAAAAGGTGTACGA
CGTGGTGGCCGCGAACCACGACATCGTGGTGTCCCGGCACCTGGTGAAGCACCGCGGCCAGCAGG
TGCACACGGGCACATTCACCGCAGCCAAGGTGACTCCGGCACACTACATGGTGGAGGAGCACGGG
TGGCGGGTGTTTGACCACCACCACACTCTCGTGGGCGAGCACCCGCCCGGGTTCGCCGACCTCTG
CGACGGGCCCGACGGCCCGGTGGTGGTGGTGGGCGACGACACCACCCTCTCGGTGAACGGAGCCA
CACGCACCGTCCAGCAGGTGTTGGACGTGGCGGTGGTGTGTCCCGCGGGCAAGCCAATCGTGATG
GTGGCCCACCCCGACAGCATCTCGCAGTTCACGGTGGGCGCGTCCAGGGACGCTGACACGCCCAT
CCCCTTCGGCATGAGGCTCAAGAGCAATGGCACCATGGTAGCAGG
Found at i:45746 original size:14 final size:14
Alignment explanation
Indices: 45727--45760 Score: 68
Period size: 14 Copynumber: 2.4 Consensus size: 14
45717 TACTAACACT
45727 TACGCATACACTCG
1 TACGCATACACTCG
45741 TACGCATACACTCG
1 TACGCATACACTCG
45755 TACGCA
1 TACGCA
45761 CACTCGCCCA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.29, C:0.35, G:0.15, T:0.21
Consensus pattern (14 bp):
TACGCATACACTCG
Left flanking sequence: Indices 45227 -- 45726
GCCGCGGGCACCGACGACGTGCTCGTGTACGCCGACCTCAAGCAGGGCCTCTTCCACGACGGCCA
GCCCGTGAGCATGGACTACCCGCCGCAGCTCGTGAGCGGCGTGGCCGCGCTCGCCGACGACGACG
GCATCCAGTTCTTCTGCGGCGACGCCCTCGGCAACCTCATGGTGTGCGAGTACGACGACGGGTTC
ACCCAGGTGGCGGCGCTCAACGTGGGCAGCCAGATCAACTGCGTGGTGGCGCTGGCGCACGGGTG
TGTCGTGGGCACCGTGGACGGCAGCATCGTCCGGGTGCTCAAACTGGACGAATCCTCCTACAAGA
AGCTCTCGCTGCTCAAAACTACCCGCAGCCCGCTCAAAATGCTCAGCCGTGACGACGGCGAACCC
TTCGGTGCGCTCTTTCTCGACGAGGCCATCGCCAAGGACAAGCACCGGGCCGTGACCGAGCGTGC
CTGGTTTAATTATTTAGTAGAGAATTAAGAACGCATACTAACACT
Right flanking sequence: Indices 45761 -- 46260
CACTCGCCCACTAACACTCGTCTACTAACACTTCCCCAACATTCGTCCACAACACTCATCCACAA
CACTTGTCCACAACACTCGTCCACTAACACTCGTCTACCATTTCCCTAACACTCGTCTACTACCA
TTTCCCGAACACTCGTCTACTACCATTTCCCTAACACCTCCCTAGCCACGCCCATGCGGCGAGAT
TGTTTTCAAGTGCGCGCAGCGCAGAGGCACCACCACCATGGGCAAGTTTGAAGACATTGCGATGC
TCGACATCCCCGACGACGAGGAGTCGATGTCGTCTGACGTGGACAGTGGCGACACCTCCAACGTG
TTTTTGGCGCCGCCCGGTGTGTATCCCGATCTCCAACAGTGGATCAAGGGGTCCCCTCTCAAGTT
CGAGTTCTCGCAGCTGACCTACGACAAGAGCCGCGAGCCGATGCTGGAAGAGACGAGGGCCTACG
TCAACTACGTGGGCAGCATGTTCAAGGCCGCCCAGGCGTTGGACA
Found at i:45765 original size:12 final size:13
Alignment explanation
Indices: 45727--45766 Score: 55
Period size: 14 Copynumber: 3.0 Consensus size: 13
45717 TACTAACACT
45727 TACGCATACACTCG
1 TACGCA-ACACTCG
45741 TACGCATACACTCG
1 TACGCA-ACACTCG
45755 TACGC-ACACTCG
1 TACGCAACACTCG
45767 CCCACTAACA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
12 7 0.27
14 19 0.73
ACGTcount: A:0.28, C:0.38, G:0.15, T:0.20
Consensus pattern (13 bp):
TACGCAACACTCG
Left flanking sequence: Indices 45227 -- 45726
GCCGCGGGCACCGACGACGTGCTCGTGTACGCCGACCTCAAGCAGGGCCTCTTCCACGACGGCCA
GCCCGTGAGCATGGACTACCCGCCGCAGCTCGTGAGCGGCGTGGCCGCGCTCGCCGACGACGACG
GCATCCAGTTCTTCTGCGGCGACGCCCTCGGCAACCTCATGGTGTGCGAGTACGACGACGGGTTC
ACCCAGGTGGCGGCGCTCAACGTGGGCAGCCAGATCAACTGCGTGGTGGCGCTGGCGCACGGGTG
TGTCGTGGGCACCGTGGACGGCAGCATCGTCCGGGTGCTCAAACTGGACGAATCCTCCTACAAGA
AGCTCTCGCTGCTCAAAACTACCCGCAGCCCGCTCAAAATGCTCAGCCGTGACGACGGCGAACCC
TTCGGTGCGCTCTTTCTCGACGAGGCCATCGCCAAGGACAAGCACCGGGCCGTGACCGAGCGTGC
CTGGTTTAATTATTTAGTAGAGAATTAAGAACGCATACTAACACT
Right flanking sequence: Indices 45767 -- 46266
CCCACTAACACTCGTCTACTAACACTTCCCCAACATTCGTCCACAACACTCATCCACAACACTTG
TCCACAACACTCGTCCACTAACACTCGTCTACCATTTCCCTAACACTCGTCTACTACCATTTCCC
GAACACTCGTCTACTACCATTTCCCTAACACCTCCCTAGCCACGCCCATGCGGCGAGATTGTTTT
CAAGTGCGCGCAGCGCAGAGGCACCACCACCATGGGCAAGTTTGAAGACATTGCGATGCTCGACA
TCCCCGACGACGAGGAGTCGATGTCGTCTGACGTGGACAGTGGCGACACCTCCAACGTGTTTTTG
GCGCCGCCCGGTGTGTATCCCGATCTCCAACAGTGGATCAAGGGGTCCCCTCTCAAGTTCGAGTT
CTCGCAGCTGACCTACGACAAGAGCCGCGAGCCGATGCTGGAAGAGACGAGGGCCTACGTCAACT
ACGTGGGCAGCATGTTCAAGGCCGCCCAGGCGTTGGACAAGCACC
Found at i:45807 original size:25 final size:24
Alignment explanation
Indices: 45771--45927 Score: 113
Period size: 25 Copynumber: 6.3 Consensus size: 24
45761 CACTCGCCCA
45771 CTAACACTCGTCTACTAACACTTCC
1 CTAACACTCGTCTAC-AACACTTCC
* * *
45796 CCAACATTCGTCCACAACACTCATCC
1 CTAACACTCGTCTACAACACT--TCC
* *
45822 AC-AACACTTGTCCACAACACTCGTCC
1 -CTAACACTCGTCTACAACACT--TCC
*
45848 ACTAACACTCGTCTAC--CATTTCC
1 -CTAACACTCGTCTACAACACTTCC
* *
45871 CTAACACTCGTCTACTACCATTTCC
1 CTAACACTCGTCTAC-AACACTTCC
* * *
45896 CGAACACTCGTCTACTACCATTTCC
1 CTAACACTCGTCTAC-AACACTTCC
45921 CTAACAC
1 CTAACAC
45928 CTCCCTAGCC
Statistics
Matches: 114, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
22 15 0.13
23 3 0.03
24 6 0.05
25 52 0.46
26 26 0.23
27 12 0.11
ACGTcount: A:0.28, C:0.41, G:0.05, T:0.25
Consensus pattern (24 bp):
CTAACACTCGTCTACAACACTTCC
Left flanking sequence: Indices 45271 -- 45770
GGGCCTCTTCCACGACGGCCAGCCCGTGAGCATGGACTACCCGCCGCAGCTCGTGAGCGGCGTGG
CCGCGCTCGCCGACGACGACGGCATCCAGTTCTTCTGCGGCGACGCCCTCGGCAACCTCATGGTG
TGCGAGTACGACGACGGGTTCACCCAGGTGGCGGCGCTCAACGTGGGCAGCCAGATCAACTGCGT
GGTGGCGCTGGCGCACGGGTGTGTCGTGGGCACCGTGGACGGCAGCATCGTCCGGGTGCTCAAAC
TGGACGAATCCTCCTACAAGAAGCTCTCGCTGCTCAAAACTACCCGCAGCCCGCTCAAAATGCTC
AGCCGTGACGACGGCGAACCCTTCGGTGCGCTCTTTCTCGACGAGGCCATCGCCAAGGACAAGCA
CCGGGCCGTGACCGAGCGTGCCTGGTTTAATTATTTAGTAGAGAATTAAGAACGCATACTAACAC
TTACGCATACACTCGTACGCATACACTCGTACGCACACTCGCCCA
Right flanking sequence: Indices 45928 -- 46427
CTCCCTAGCCACGCCCATGCGGCGAGATTGTTTTCAAGTGCGCGCAGCGCAGAGGCACCACCACC
ATGGGCAAGTTTGAAGACATTGCGATGCTCGACATCCCCGACGACGAGGAGTCGATGTCGTCTGA
CGTGGACAGTGGCGACACCTCCAACGTGTTTTTGGCGCCGCCCGGTGTGTATCCCGATCTCCAAC
AGTGGATCAAGGGGTCCCCTCTCAAGTTCGAGTTCTCGCAGCTGACCTACGACAAGAGCCGCGAG
CCGATGCTGGAAGAGACGAGGGCCTACGTCAACTACGTGGGCAGCATGTTCAAGGCCGCCCAGGC
GTTGGACAAGCACCCGTTCCCCGCGGACGACGAGCCCATCGGCTTGGTGGCACAAGGGTTTGGCC
TCGAGCAGGCCCGCCAGCGCCACGCCGAGCGGGTCAACGAGGTGTTTGCCACCATGGTCGACCAC
GCACAGGAGTTGGTGGCGCACGATCCGCAGTTCGACTGTCTCCGC
Found at i:45822 original size:13 final size:13
Alignment explanation
Indices: 45760--45860 Score: 107
Period size: 13 Copynumber: 7.7 Consensus size: 13
45750 ACTCGTACGC
*
45760 ACACTCGCCCACTA
1 ACACTCGTCCAC-A
*
45774 ACACTCGTCTACTA
1 ACACTCGTCCAC-A
*
45788 ACACT--TCCCCA
1 ACACTCGTCCACA
*
45799 ACATTCGTCCACA
1 ACACTCGTCCACA
*
45812 ACACTCATCCACA
1 ACACTCGTCCACA
*
45825 ACACTTGTCCACA
1 ACACTCGTCCACA
45838 ACACTCGTCCACTA
1 ACACTCGTCCAC-A
45852 ACACTCGTC
1 ACACTCGTC
45861 TACCATTTCC
Statistics
Matches: 73, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
11 5 0.07
12 3 0.04
13 38 0.52
14 27 0.37
ACGTcount: A:0.30, C:0.44, G:0.06, T:0.21
Consensus pattern (13 bp):
ACACTCGTCCACA
Left flanking sequence: Indices 45260 -- 45759
GACCTCAAGCAGGGCCTCTTCCACGACGGCCAGCCCGTGAGCATGGACTACCCGCCGCAGCTCGT
GAGCGGCGTGGCCGCGCTCGCCGACGACGACGGCATCCAGTTCTTCTGCGGCGACGCCCTCGGCA
ACCTCATGGTGTGCGAGTACGACGACGGGTTCACCCAGGTGGCGGCGCTCAACGTGGGCAGCCAG
ATCAACTGCGTGGTGGCGCTGGCGCACGGGTGTGTCGTGGGCACCGTGGACGGCAGCATCGTCCG
GGTGCTCAAACTGGACGAATCCTCCTACAAGAAGCTCTCGCTGCTCAAAACTACCCGCAGCCCGC
TCAAAATGCTCAGCCGTGACGACGGCGAACCCTTCGGTGCGCTCTTTCTCGACGAGGCCATCGCC
AAGGACAAGCACCGGGCCGTGACCGAGCGTGCCTGGTTTAATTATTTAGTAGAGAATTAAGAACG
CATACTAACACTTACGCATACACTCGTACGCATACACTCGTACGC
Right flanking sequence: Indices 45861 -- 46360
TACCATTTCCCTAACACTCGTCTACTACCATTTCCCGAACACTCGTCTACTACCATTTCCCTAAC
ACCTCCCTAGCCACGCCCATGCGGCGAGATTGTTTTCAAGTGCGCGCAGCGCAGAGGCACCACCA
CCATGGGCAAGTTTGAAGACATTGCGATGCTCGACATCCCCGACGACGAGGAGTCGATGTCGTCT
GACGTGGACAGTGGCGACACCTCCAACGTGTTTTTGGCGCCGCCCGGTGTGTATCCCGATCTCCA
ACAGTGGATCAAGGGGTCCCCTCTCAAGTTCGAGTTCTCGCAGCTGACCTACGACAAGAGCCGCG
AGCCGATGCTGGAAGAGACGAGGGCCTACGTCAACTACGTGGGCAGCATGTTCAAGGCCGCCCAG
GCGTTGGACAAGCACCCGTTCCCCGCGGACGACGAGCCCATCGGCTTGGTGGCACAAGGGTTTGG
CCTCGAGCAGGCCCGCCAGCGCCACGCCGAGCGGGTCAACGAGGT
Found at i:45877 original size:22 final size:24
Alignment explanation
Indices: 45849--45927 Score: 117
Period size: 25 Copynumber: 3.3 Consensus size: 24
45839 CACTCGTCCA
45849 CTAACACTCG-T-CTACCATTTCC
1 CTAACACTCGCTACTACCATTTCC
45871 CTAACACTCGTCTACTACCATTTCC
1 CTAACACTCG-CTACTACCATTTCC
*
45896 CGAACACTCGTCTACTACCATTTCC
1 CTAACACTCG-CTACTACCATTTCC
45921 CTAACAC
1 CTAACAC
45928 CTCCCTAGCC
Statistics
Matches: 52, Mismatches: 2, Indels: 3
0.91 0.04 0.05
Matches are distributed among these distances:
22 10 0.19
24 1 0.02
25 41 0.79
ACGTcount: A:0.25, C:0.41, G:0.05, T:0.29
Consensus pattern (24 bp):
CTAACACTCGCTACTACCATTTCC
Left flanking sequence: Indices 45349 -- 45848
CGACGACGGCATCCAGTTCTTCTGCGGCGACGCCCTCGGCAACCTCATGGTGTGCGAGTACGACG
ACGGGTTCACCCAGGTGGCGGCGCTCAACGTGGGCAGCCAGATCAACTGCGTGGTGGCGCTGGCG
CACGGGTGTGTCGTGGGCACCGTGGACGGCAGCATCGTCCGGGTGCTCAAACTGGACGAATCCTC
CTACAAGAAGCTCTCGCTGCTCAAAACTACCCGCAGCCCGCTCAAAATGCTCAGCCGTGACGACG
GCGAACCCTTCGGTGCGCTCTTTCTCGACGAGGCCATCGCCAAGGACAAGCACCGGGCCGTGACC
GAGCGTGCCTGGTTTAATTATTTAGTAGAGAATTAAGAACGCATACTAACACTTACGCATACACT
CGTACGCATACACTCGTACGCACACTCGCCCACTAACACTCGTCTACTAACACTTCCCCAACATT
CGTCCACAACACTCATCCACAACACTTGTCCACAACACTCGTCCA
Right flanking sequence: Indices 45928 -- 46427
CTCCCTAGCCACGCCCATGCGGCGAGATTGTTTTCAAGTGCGCGCAGCGCAGAGGCACCACCACC
ATGGGCAAGTTTGAAGACATTGCGATGCTCGACATCCCCGACGACGAGGAGTCGATGTCGTCTGA
CGTGGACAGTGGCGACACCTCCAACGTGTTTTTGGCGCCGCCCGGTGTGTATCCCGATCTCCAAC
AGTGGATCAAGGGGTCCCCTCTCAAGTTCGAGTTCTCGCAGCTGACCTACGACAAGAGCCGCGAG
CCGATGCTGGAAGAGACGAGGGCCTACGTCAACTACGTGGGCAGCATGTTCAAGGCCGCCCAGGC
GTTGGACAAGCACCCGTTCCCCGCGGACGACGAGCCCATCGGCTTGGTGGCACAAGGGTTTGGCC
TCGAGCAGGCCCGCCAGCGCCACGCCGAGCGGGTCAACGAGGTGTTTGCCACCATGGTCGACCAC
GCACAGGAGTTGGTGGCGCACGATCCGCAGTTCGACTGTCTCCGC
Found at i:75009 original size:12 final size:12
Alignment explanation
Indices: 74992--75018 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
74982 CCGCGACGGT
74992 GTCCACCACCTC
1 GTCCACCACCTC
75004 GTCCACCACCTC
1 GTCCACCACCTC
75016 GTC
1 GTC
75019 GATCCGCCGG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.15, C:0.56, G:0.11, T:0.19
Consensus pattern (12 bp):
GTCCACCACCTC
Left flanking sequence: Indices 74492 -- 74991
CCCTGCGATCTGACCACCACGGTTACCAATGAAATCGTCTTTAATGGCAGTCTTGTGGAACACTA
CGCTCGCCACCGTGCCAAGCCTCGCACCGACGACTACGAAGTGATTGTGTTTAACGGTACCCATA
AACTGCTGTTTAAGCACCTGTCGGTATTACTGTTGGCGCGGTCATTCGATATGCTGGCTGATCTC
ACCATGGCCCACATCATATGTTACTTGTACTACTACCGTGACCACTTTGGTTTGGGCGACGATGT
GGGCATTGACCAGCTCCGGTTGCTCCACTTGGGCAAGCCGTATCTAATCACCGACGTGCGGCTGC
GGCAGCTCTCTGTCGTAAATCTCCGGCAGTATAACACCATCCACTTGATAATCACGGAATCCCGA
CGCGACATTTACCGCTATTTCAATGTGGAAAATTACTTTCGTTTCGGCCAAACCCAGGTGCATCT
GAGTATCTTTTCCCGCCGCAAACGCAGCAACTCCGCCGCGACGGT
Right flanking sequence: Indices 75019 -- 75518
GATCCGCCGGCGCAAACGGCTGTTGGTGAAGGCGCTCCTAAAAGTTTTTGGTTCTTCTGTAGAAA
CTAATGTCGCTTGACGCTGGTCGTCGTGTAGTAATACTAATGTGCCGTATTGATGGCTGTCTTCG
CTAACCCGATGTAGTTTTTCCCGCCTGATCTGGCGAGGCGCGAATTTTTCACTTGATGTCGCAGA
CGCAACACAGATAAATTACGAATATCAAACTCAGTGTGTTAATCTATATTACACATATATTGTGG
TGGCACCGTATCATCCTATTAAACATCAAAACTGCTTAGTAACCGAAAGCAGCCAACTTCTGGGA
AACCTCGGAGTCAGCCTGGGAAGCGGAAGCAGCAGCAACCTTCTTAGAAAGAGCAGCCTTCTTGG
CGTAGTACTCAGCAGACTTGAGCTTTCTCTTCTCCTCCAACTTGGACACAACCGACTCGTACTTC
CAGCCGACAGAGGTGGACAACTTGCCGACGGTGGTGTACTTTCTG
Found at i:77026 original size:18 final size:18
Alignment explanation
Indices: 77003--77042 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
76993 CCCCATAAAT
*
77003 CGGTCTACCTTATTCAAA
1 CGGTCTACCTTAGTCAAA
* *
77021 CGGTCTATCTTAGTCACA
1 CGGTCTACCTTAGTCAAA
77039 CGGT
1 CGGT
77043 TCAAACAACT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.23, C:0.28, G:0.17, T:0.33
Consensus pattern (18 bp):
CGGTCTACCTTAGTCAAA
Left flanking sequence: Indices 76503 -- 77002
GGGCGGGGACTCGATCCCCACTTTTGGGCGCACCGTGTGTTTAGCCAACCAGTCAACTTGACCAT
GGCGGAGTTGGCCCAGTATAACGGGAAAACGCGTTCGCGGATATTCATCGCCCTCAATGGCACGG
TGTTTGACGTGACGCGGTCCGCACAGATCTACTCGGCGGAGACTGGTTCTTACCGCCAGCTCGTG
GGCCGAGATAGCTCGCGGGTGTTCGTAACGGGGTGTCTTGGGAAGCCCGACGAATACACCCACGA
CTTGCGTGAGCTCGACCCCGCACTCGTAGACAAGAACTTGGCGCTGTGGCTTGACTACTACCGCA
ACCACAAGAACTACTGGGAGGTGGGCACGGTCCAGCTCGAGACCCCGGATCCAGACACCACCCCT
CCCGCCAGCTGCGAACACGCGCGTCGTCCAGGACACTAGAATGAAACAGCCATTAATGAAACGGT
CCATTCAATTGAACGGTGCTGCATCAATCGGACCACCCCATAAAT
Right flanking sequence: Indices 77043 -- 77542
TCAAACAACTCAAATGGTCCGCCATATTCAAACGGTCTATCCTTACTGTCACGAGACCTACCTTT
CTCACCCCCATCCATAGGCGTATGTACGTGCTGTATGCATTGGTTTATTTATTAGCGCTTGCACG
AGTCCAAGCTCTTCTGGAGCACGGCAAGCAACTCGTCGGGGTCCTCCAACCCGATACTGATACGA
ATCAAGTTGCGGTCAACGTCCCACTGCGCGATGTCGTCAAGCTCCTGGTAGTGGGCCAAGATGGC
GTAGGGACACGCCAACGTGAAGTTGGTGCCCAACGACGGGCCCTTGTGCAAGTTGACGGCGTTGA
AAAAGTTGATGGCGCACTCCTGGTCGTGGAACAAGAACGAGATCAACCCGCCGTACCCTCCGGTG
GACGTTTTGATGTCATCGTAGAAGGGCTTCGTCTCGTTGAGCTCGGGGTAGTACACCTTGGCGAT
CAATGGCAGCTCGTCCAACAAGTGGGCCACTCGCGACGCGGTGGA
Found at i:79511 original size:16 final size:16
Alignment explanation
Indices: 79490--79535 Score: 85
Period size: 15 Copynumber: 2.9 Consensus size: 16
79480 AGTCAACAAT
79490 CTCCACACGCAATACC
1 CTCCACACGCAATACC
79506 CTCCACACGCAATA-C
1 CTCCACACGCAATACC
79521 CTCCACACGCAATAC
1 CTCCACACGCAATAC
79536 ATCTCTTTCG
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
15 15 0.52
16 14 0.48
ACGTcount: A:0.33, C:0.48, G:0.07, T:0.13
Consensus pattern (16 bp):
CTCCACACGCAATACC
Left flanking sequence: Indices 78990 -- 79489
TGTGCGATTCCAACGGCTCCAGGTCGATCTCTGGGGCAGGTCTCACGTGGATGTCGCTGATTAAA
GTTTTGTTTGACTCTTTTCGATTTGGGCGCGGCATGACTCAGGTGCCGCGGGACCCCACATGTGC
CGGGCCTGTGGGTGTGGCGCTCGGGAGTGGTGTTGGAAGTGTGTCGGTTGTTCTAGATGGAGATG
CGGCCCCGAGAGGGGCTTTCGTGGTTCGTAAACACAAACGTCTCTAAACCGTAAATTGCCGTGGG
CACATGCTGCGGTACCTACCGTTCGCGGAAGCGATCGGTGATTTCTCGATAAGGAGAAAGAGCGA
CCTGCCGGTGCGGGCGGTTTAAACCGTTTTGAGGGGAATAAAGAGGGGAGTAAAAAGATTGAACG
GTTGTTTACGGATAGGACGGTCAACTTATCTCCCATGCAATATTCTCCAAACGCAAAGTATTCCA
CAGGCACCACTACGCATTACTACACGCAATACTACAGTCAACAAT
Right flanking sequence: Indices 79536 -- 80035
ATCTCTTTCGCTCTACCTGTCTCTAGGAACTACCTTCTTGCCTAAGCTCCACCTCTTCGCTACCT
CTCGCTCCACCTCTCGCTCCACCTCTCTTCCACATCCCCACACCCATCTACCTCTTCTCATTCGT
CTGAATTTATCTATGCTACAACCTAACTCTTGATACAGTTGACCGCCCCCTCCTGGAGCCGCTTG
ACATCGGCCGCCGCGGGCGCAGGAGCCTTTCTGTTGTGTTGCATGTGCGATTGCACCAAGTGACC
GGCCGCCAACGCAGCCCCCAACGACAACTCGGCCGCCAACACCGCCGACGCAACAATCTTGGCGA
GCTGCTGGGCGTTCTCGCCGGGGTTGGTCGGGTGGGGACCCCGCACCCCCAACAAGTCCAACATC
GCCGCCTGGGGGCCCAAAATGGTCCCGCCACCAATGGTGCCGACCTCGATCGACGGCATCAGCAC
CAGGATGTGCAAGTCGTCGCCCACACGGCGCATCAACGTGATACA
Found at i:79614 original size:12 final size:12
Alignment explanation
Indices: 79581--79627 Score: 71
Period size: 12 Copynumber: 4.0 Consensus size: 12
79571 TCTTGCCTAA
79581 GCTCCACCTCTTC
1 GCTCCACCTC-TC
79594 GCT--ACCTCTC
1 GCTCCACCTCTC
79604 GCTCCACCTCTC
1 GCTCCACCTCTC
79616 GCTCCACCTCTC
1 GCTCCACCTCTC
79628 TTCCACATCC
Statistics
Matches: 32, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
10 5 0.16
11 5 0.16
12 19 0.59
13 3 0.09
ACGTcount: A:0.09, C:0.55, G:0.09, T:0.28
Consensus pattern (12 bp):
GCTCCACCTCTC
Left flanking sequence: Indices 79081 -- 79580
GCGCGGCATGACTCAGGTGCCGCGGGACCCCACATGTGCCGGGCCTGTGGGTGTGGCGCTCGGGA
GTGGTGTTGGAAGTGTGTCGGTTGTTCTAGATGGAGATGCGGCCCCGAGAGGGGCTTTCGTGGTT
CGTAAACACAAACGTCTCTAAACCGTAAATTGCCGTGGGCACATGCTGCGGTACCTACCGTTCGC
GGAAGCGATCGGTGATTTCTCGATAAGGAGAAAGAGCGACCTGCCGGTGCGGGCGGTTTAAACCG
TTTTGAGGGGAATAAAGAGGGGAGTAAAAAGATTGAACGGTTGTTTACGGATAGGACGGTCAACT
TATCTCCCATGCAATATTCTCCAAACGCAAAGTATTCCACAGGCACCACTACGCATTACTACACG
CAATACTACAGTCAACAATCTCCACACGCAATACCCTCCACACGCAATACCTCCACACGCAATAC
ATCTCTTTCGCTCTACCTGTCTCTAGGAACTACCTTCTTGCCTAA
Right flanking sequence: Indices 79628 -- 80127
TTCCACATCCCCACACCCATCTACCTCTTCTCATTCGTCTGAATTTATCTATGCTACAACCTAAC
TCTTGATACAGTTGACCGCCCCCTCCTGGAGCCGCTTGACATCGGCCGCCGCGGGCGCAGGAGCC
TTTCTGTTGTGTTGCATGTGCGATTGCACCAAGTGACCGGCCGCCAACGCAGCCCCCAACGACAA
CTCGGCCGCCAACACCGCCGACGCAACAATCTTGGCGAGCTGCTGGGCGTTCTCGCCGGGGTTGG
TCGGGTGGGGACCCCGCACCCCCAACAAGTCCAACATCGCCGCCTGGGGGCCCAAAATGGTCCCG
CCACCAATGGTGCCGACCTCGATCGACGGCATCAGCACCAGGATGTGCAAGTCGTCGCCCACACG
GCGCATCAACGTGATACAGTTGGACGACTCGACGTTCTGGGCCGGGTCCTGGCCACAGGCCAAGA
ACACCGCCGTCACCAAGTTGGCGGCGTGGGCGTTGAAACCGCCCA
Found at i:79633 original size:23 final size:23
Alignment explanation
Indices: 79581--79627 Score: 69
Period size: 23 Copynumber: 2.0 Consensus size: 23
79571 TCTTGCCTAA
79581 GCTCCACCTCTTCGCTACCTCTC
1 GCTCCACCTCTTCGCTACCTCTC
79604 GCTCCACCTC-TCGCTCCACCTCTC
1 GCTCCACCTCTTCGCT--ACCTCTC
79628 TTCCACATCC
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
22 5 0.23
23 10 0.45
24 7 0.32
ACGTcount: A:0.09, C:0.55, G:0.09, T:0.28
Consensus pattern (23 bp):
GCTCCACCTCTTCGCTACCTCTC
Left flanking sequence: Indices 79081 -- 79580
GCGCGGCATGACTCAGGTGCCGCGGGACCCCACATGTGCCGGGCCTGTGGGTGTGGCGCTCGGGA
GTGGTGTTGGAAGTGTGTCGGTTGTTCTAGATGGAGATGCGGCCCCGAGAGGGGCTTTCGTGGTT
CGTAAACACAAACGTCTCTAAACCGTAAATTGCCGTGGGCACATGCTGCGGTACCTACCGTTCGC
GGAAGCGATCGGTGATTTCTCGATAAGGAGAAAGAGCGACCTGCCGGTGCGGGCGGTTTAAACCG
TTTTGAGGGGAATAAAGAGGGGAGTAAAAAGATTGAACGGTTGTTTACGGATAGGACGGTCAACT
TATCTCCCATGCAATATTCTCCAAACGCAAAGTATTCCACAGGCACCACTACGCATTACTACACG
CAATACTACAGTCAACAATCTCCACACGCAATACCCTCCACACGCAATACCTCCACACGCAATAC
ATCTCTTTCGCTCTACCTGTCTCTAGGAACTACCTTCTTGCCTAA
Right flanking sequence: Indices 79628 -- 80127
TTCCACATCCCCACACCCATCTACCTCTTCTCATTCGTCTGAATTTATCTATGCTACAACCTAAC
TCTTGATACAGTTGACCGCCCCCTCCTGGAGCCGCTTGACATCGGCCGCCGCGGGCGCAGGAGCC
TTTCTGTTGTGTTGCATGTGCGATTGCACCAAGTGACCGGCCGCCAACGCAGCCCCCAACGACAA
CTCGGCCGCCAACACCGCCGACGCAACAATCTTGGCGAGCTGCTGGGCGTTCTCGCCGGGGTTGG
TCGGGTGGGGACCCCGCACCCCCAACAAGTCCAACATCGCCGCCTGGGGGCCCAAAATGGTCCCG
CCACCAATGGTGCCGACCTCGATCGACGGCATCAGCACCAGGATGTGCAAGTCGTCGCCCACACG
GCGCATCAACGTGATACAGTTGGACGACTCGACGTTCTGGGCCGGGTCCTGGCCACAGGCCAAGA
ACACCGCCGTCACCAAGTTGGCGGCGTGGGCGTTGAAACCGCCCA
Found at i:84020 original size:12 final size:12
Alignment explanation
Indices: 84003--84077 Score: 69
Period size: 12 Copynumber: 6.0 Consensus size: 12
83993 TTGCCCGAAG
84003 TCTCCTCCTTCT
1 TCTCCTCCTTCT
84015 TCTCCTCCTTCT
1 TCTCCTCCTTCT
*
84027 TCTCCACCTTCT
1 TCTCCTCCTTCT
* *
84039 TGTCCTTCTTTTCCT
1 TCTCC-TC-CTT-CT
*
84054 TCTTCTCCTTCT
1 TCTCCTCCTTCT
* *
84066 TGTCCTTCTTCT
1 TCTCCTCCTTCT
84078 CATCAGCGAA
Statistics
Matches: 50, Mismatches: 10, Indels: 6
0.76 0.15 0.09
Matches are distributed among these distances:
12 38 0.76
13 3 0.06
14 4 0.08
15 5 0.10
ACGTcount: A:0.01, C:0.43, G:0.03, T:0.53
Consensus pattern (12 bp):
TCTCCTCCTTCT
Left flanking sequence: Indices 83503 -- 84002
CAACGGGGGTTTGACCGTTCGTCGGACCCGAGACTCGAACCGCCAATTACTTCTCCTAATTGGGC
GTAATTACAAACATATTTCACGCAGCCACCATGTGGTGGGTTCAACCATTATCCATCTATATTTT
GTACTAAGTCCTAATAATTACTTGAGGGACACCAACTTGATGTCGAAAGTCAACTCGGAGTTGGC
GGGGATGCCAGGCAACTTCTGCGAGCCGTAGCCCATCTTGGCGGGGATGACAACTCTTCTCTCAC
CACCGACAGCCATGCCGGTGACACCCAAGTCGAAACCCTTGATGCACTCGCCCTTACCCAAGCCG
AAGGTGAAGGGCTTACCGGAGGTGTTCTTGTCAAACACCTTACCGTTGGACAACTTGCCCACGTA
ACGGATACCAACCTTGTGGCCGGTCTTGGCAGCGGGGCCCTTGCCGACCTTGCGGTCCTCGGTGA
TGACACCACCCAAAAGAGTCTTGGTGGGGTACTTCTTGCCCGAAG
Right flanking sequence: Indices 84078 -- 84577
CATCAGCGAAGGTAGAGCCAGTGGGGCCCTGCTCCAACTCCTTGGTGAACTGCACGGCCTTCTTG
GCCTTCTTGGACTTGGCGTCCTCCTGGGGAGCGGCTCTCTTCTTGGAGGGCTTCTGCTCGGGCTC
CTCCTCCTCTTCGTCGTCGTCCTCAGAAGCCTCGTTGTCGAGCAACTCCTGGATCTTGGCCTCGT
CGTACTCGCCCTCATCGTCGTCGTAGTAGGCGTCCAACTCGTCCTCCTCGTCCTCAGAGTCAAAG
TCGTCCTCATCAGAGTCGTCAGCGGGGTGCTCAACGTAGTTGCCGTGCAAGTGGATGGGGTAAGA
ACCAGTGGCCACAAAGTACACCTCCTCCTCGGGGGAGATGGTGATGTCCAACGGCACCTGGAACT
GGCCGTTGGGGGAGAGAGTGCACACGACGTACTCAGAGATGTCCTCCTCGTCATCCTCCTCGTCC
TCGTCATCCTCGTCCTCGGCCTCGTCCTCAGCCTTCTTGGCGGCC
Found at i:84066 original size:9 final size:9
Alignment explanation
Indices: 84007--84078 Score: 69
Period size: 9 Copynumber: 8.3 Consensus size: 9
83997 CCGAAGTCTC
84007 CTCCTTCTT
1 CTCCTTCTT
84016 CTCC-TC--
1 CTCCTTCTT
* *
84022 CTTCTTCTC
1 CTCCTTCTT
*
84031 CACCTTCTT
1 CTCCTTCTT
*
84040 GTCCTTCTT
1 CTCCTTCTT
*
84049 TTCCTTCTT
1 CTCCTTCTT
84058 CTCCTTCTT
1 CTCCTTCTT
*
84067 GTCCTTCTT
1 CTCCTTCTT
84076 CTC
1 CTC
84079 ATCAGCGAAG
Statistics
Matches: 50, Mismatches: 10, Indels: 6
0.76 0.15 0.09
Matches are distributed among these distances:
6 3 0.06
7 2 0.04
8 2 0.04
9 43 0.86
ACGTcount: A:0.01, C:0.43, G:0.03, T:0.53
Consensus pattern (9 bp):
CTCCTTCTT
Left flanking sequence: Indices 83507 -- 84006
GGGGGTTTGACCGTTCGTCGGACCCGAGACTCGAACCGCCAATTACTTCTCCTAATTGGGCGTAA
TTACAAACATATTTCACGCAGCCACCATGTGGTGGGTTCAACCATTATCCATCTATATTTTGTAC
TAAGTCCTAATAATTACTTGAGGGACACCAACTTGATGTCGAAAGTCAACTCGGAGTTGGCGGGG
ATGCCAGGCAACTTCTGCGAGCCGTAGCCCATCTTGGCGGGGATGACAACTCTTCTCTCACCACC
GACAGCCATGCCGGTGACACCCAAGTCGAAACCCTTGATGCACTCGCCCTTACCCAAGCCGAAGG
TGAAGGGCTTACCGGAGGTGTTCTTGTCAAACACCTTACCGTTGGACAACTTGCCCACGTAACGG
ATACCAACCTTGTGGCCGGTCTTGGCAGCGGGGCCCTTGCCGACCTTGCGGTCCTCGGTGATGAC
ACCACCCAAAAGAGTCTTGGTGGGGTACTTCTTGCCCGAAGTCTC
Right flanking sequence: Indices 84079 -- 84578
ATCAGCGAAGGTAGAGCCAGTGGGGCCCTGCTCCAACTCCTTGGTGAACTGCACGGCCTTCTTGG
CCTTCTTGGACTTGGCGTCCTCCTGGGGAGCGGCTCTCTTCTTGGAGGGCTTCTGCTCGGGCTCC
TCCTCCTCTTCGTCGTCGTCCTCAGAAGCCTCGTTGTCGAGCAACTCCTGGATCTTGGCCTCGTC
GTACTCGCCCTCATCGTCGTCGTAGTAGGCGTCCAACTCGTCCTCCTCGTCCTCAGAGTCAAAGT
CGTCCTCATCAGAGTCGTCAGCGGGGTGCTCAACGTAGTTGCCGTGCAAGTGGATGGGGTAAGAA
CCAGTGGCCACAAAGTACACCTCCTCCTCGGGGGAGATGGTGATGTCCAACGGCACCTGGAACTG
GCCGTTGGGGGAGAGAGTGCACACGACGTACTCAGAGATGTCCTCCTCGTCATCCTCCTCGTCCT
CGTCATCCTCGTCCTCGGCCTCGTCCTCAGCCTTCTTGGCGGCCT
Found at i:84533 original size:9 final size:9
Alignment explanation
Indices: 84512--84546 Score: 52
Period size: 9 Copynumber: 3.9 Consensus size: 9
84502 AGAGATGTCC
84512 TCCTCGTCA
1 TCCTCGTCA
* *
84521 TCCTCCTCG
1 TCCTCGTCA
84530 TCCTCGTCA
1 TCCTCGTCA
84539 TCCTCGTC
1 TCCTCGTC
84547 CTCGGCCTCG
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
9 22 1.00
ACGTcount: A:0.06, C:0.49, G:0.11, T:0.34
Consensus pattern (9 bp):
TCCTCGTCA
Left flanking sequence: Indices 84012 -- 84511
TCTTCTCCTCCTTCTTCTCCACCTTCTTGTCCTTCTTTTCCTTCTTCTCCTTCTTGTCCTTCTTC
TCATCAGCGAAGGTAGAGCCAGTGGGGCCCTGCTCCAACTCCTTGGTGAACTGCACGGCCTTCTT
GGCCTTCTTGGACTTGGCGTCCTCCTGGGGAGCGGCTCTCTTCTTGGAGGGCTTCTGCTCGGGCT
CCTCCTCCTCTTCGTCGTCGTCCTCAGAAGCCTCGTTGTCGAGCAACTCCTGGATCTTGGCCTCG
TCGTACTCGCCCTCATCGTCGTCGTAGTAGGCGTCCAACTCGTCCTCCTCGTCCTCAGAGTCAAA
GTCGTCCTCATCAGAGTCGTCAGCGGGGTGCTCAACGTAGTTGCCGTGCAAGTGGATGGGGTAAG
AACCAGTGGCCACAAAGTACACCTCCTCCTCGGGGGAGATGGTGATGTCCAACGGCACCTGGAAC
TGGCCGTTGGGGGAGAGAGTGCACACGACGTACTCAGAGATGTCC
Right flanking sequence: Indices 84547 -- 85046
CTCGGCCTCGTCCTCAGCCTTCTTGGCGGCCTTCTTGCCCTTCTTGGGCTTCTCCTCCTCTTCCT
CTTCCTCCTCCTCGTCGTCCTCGTCGTCCTCGTCGTCAGAAAGCCCGTACTCGTCGTCAATGTCG
TCGTCAGACTTCTTCAAGATTCTCAAGGTCGAGGGTTGGTTGTTCTCATCAACGGCATCGGGGTC
AATGGCAGCGCCAGTGATTCTGATGGTGATGGGGAACTCCTCCGAGATGGCGGGCTGGGGGTCAA
ACGGCTTAAGAGCCAAGTTGTAGGTAGCAATAGGAAGCAAGCTCGCCATGGTTGTAGATGAGTTG
TGAGGGGGAAACTTTGAATGCGATGAGCATCCAGAACATGCAGGGAGTCGTGATTACATAAGCGA
ACAATCCCACGGTTAGCCCGACACTCTAAAGCAGCGAGTAATAATAGACTGCAGAACCCCGTAGA
AGGGCACCGAATACTACCAGGGGACGCGTCCAAAATACTATTTCG
Found at i:84632 original size:9 final size:9
Alignment explanation
Indices: 84620--84648 Score: 58
Period size: 9 Copynumber: 3.2 Consensus size: 9
84610 CTCTTCCTCC
84620 TCCTCGTCG
1 TCCTCGTCG
84629 TCCTCGTCG
1 TCCTCGTCG
84638 TCCTCGTCG
1 TCCTCGTCG
84647 TC
1 TC
84649 AGAAAGCCCG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.00, C:0.45, G:0.21, T:0.34
Consensus pattern (9 bp):
TCCTCGTCG
Left flanking sequence: Indices 84120 -- 84619
TGGTGAACTGCACGGCCTTCTTGGCCTTCTTGGACTTGGCGTCCTCCTGGGGAGCGGCTCTCTTC
TTGGAGGGCTTCTGCTCGGGCTCCTCCTCCTCTTCGTCGTCGTCCTCAGAAGCCTCGTTGTCGAG
CAACTCCTGGATCTTGGCCTCGTCGTACTCGCCCTCATCGTCGTCGTAGTAGGCGTCCAACTCGT
CCTCCTCGTCCTCAGAGTCAAAGTCGTCCTCATCAGAGTCGTCAGCGGGGTGCTCAACGTAGTTG
CCGTGCAAGTGGATGGGGTAAGAACCAGTGGCCACAAAGTACACCTCCTCCTCGGGGGAGATGGT
GATGTCCAACGGCACCTGGAACTGGCCGTTGGGGGAGAGAGTGCACACGACGTACTCAGAGATGT
CCTCCTCGTCATCCTCCTCGTCCTCGTCATCCTCGTCCTCGGCCTCGTCCTCAGCCTTCTTGGCG
GCCTTCTTGCCCTTCTTGGGCTTCTCCTCCTCTTCCTCTTCCTCC
Right flanking sequence: Indices 84649 -- 85148
AGAAAGCCCGTACTCGTCGTCAATGTCGTCGTCAGACTTCTTCAAGATTCTCAAGGTCGAGGGTT
GGTTGTTCTCATCAACGGCATCGGGGTCAATGGCAGCGCCAGTGATTCTGATGGTGATGGGGAAC
TCCTCCGAGATGGCGGGCTGGGGGTCAAACGGCTTAAGAGCCAAGTTGTAGGTAGCAATAGGAAG
CAAGCTCGCCATGGTTGTAGATGAGTTGTGAGGGGGAAACTTTGAATGCGATGAGCATCCAGAAC
ATGCAGGGAGTCGTGATTACATAAGCGAACAATCCCACGGTTAGCCCGACACTCTAAAGCAGCGA
GTAATAATAGACTGCAGAACCCCGTAGAAGGGCACCGAATACTACCAGGGGACGCGTCCAAAATA
CTATTTCGTTTCTGTATTAACTATACGACTTATTACATCCACATCATCATAAACTTAGAACTTCA
ACAAGTGAGGCTTGTCACCGGACTTCAACGAGAAAGAGGCAGCCA
Found at i:97487 original size:9 final size:9
Alignment explanation
Indices: 97473--97505 Score: 66
Period size: 9 Copynumber: 3.7 Consensus size: 9
97463 CTATCGAGAT
97473 TCAACCACC
1 TCAACCACC
97482 TCAACCACC
1 TCAACCACC
97491 TCAACCACC
1 TCAACCACC
97500 TCAACC
1 TCAACC
97506 TCCGTCACCA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 24 1.00
ACGTcount: A:0.33, C:0.55, G:0.00, T:0.12
Consensus pattern (9 bp):
TCAACCACC
Left flanking sequence: Indices 96973 -- 97472
TACATCGTCAAGGAGCTCTGCGAGTGTGGGATCGTGGCGGCGCTGGACCATGGCGCTGAACTATA
CAAAAAGATTCGGTTCAATCTTCACCGCGACGAAGTGGAAAAGGCATTGGCGTCTGACGACGAGG
TCTCAGCATTAATCAAGTAGGTACATAAGCATATCGGTTAGATTTCCACCTCGGTATTTTCCGAC
AAAGAAATAACAGGTAGAAGGGTAACATCAATTAACATTAAGAACGTTATTCGGATCGACACTGA
TGTGATTTCCTCGTAACCCCACCTCTAACCCTATCTACGCACTGTTGTCAGACGCGCGCATACAA
AACGCGTCTTGAGCCTGAATCGTATCTCTGTGAGCAGCGAGGGCTCTAGCGACAGAACGATGAGC
AATAGCGGTACCAGTTGTATGGACGCAGACAACGCCTCATCGACTCCTCCAAATGCTCCAGTGAG
CCTCCTGGCGCTCCTAAATGGGTACCGCCCCAAGCCTATCGAGAT
Right flanking sequence: Indices 97506 -- 98005
TCCGTCACCACCGCCACAAGAACCCCAGGTTATGGTTCCAAACTCTTCATTCGAAGACACTGACG
CCGATGAACTTACCGAACCCGACAGTTTCCTTGAGAATCACGCGGATACCGCTCAACAGCTCAAG
TCGGACCACGAGTTGAAGGAGCTCGAACGGCGGATGCTTGGCGGCGCGCGGATGGTCTCGGGATC
TGACTTGTTCCAGATGCTTGGCCCAAAACCTCGCAAACCTCCTCCTGTTCCACAGGAGCTGCTTC
CGTTGACCAAACCCGCCAACTCCAACCCGATCATCTTAGAGCTGCTGTCACCACATGGCTCGGAC
GACGAGGTGGTAGAGATTCCCCTGACCAGCGAGTTGGAGGCAAAGATGCCTAAAGGCAAGTCTGT
CTCCGCCAAAGACCTACTTGGCGGGTTTGGTAAACGCACCAAATCCAAGAAAGCAAGCAAACGTC
CCAAGGTCATGGTAACCCTTCAAGTACCACCGGATGCCTTACAGT
Found at i:129251 original size:12 final size:12
Alignment explanation
Indices: 129236--129273 Score: 67
Period size: 12 Copynumber: 3.2 Consensus size: 12
129226 ACCACCGGTG
129236 GAACCACCAGAA
1 GAACCACCAGAA
*
129248 GAACCACCAGAC
1 GAACCACCAGAA
129260 GAACCACCAGAA
1 GAACCACCAGAA
129272 GA
1 GA
129274 GCCGGAAGAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
12 24 1.00
ACGTcount: A:0.47, C:0.34, G:0.18, T:0.00
Consensus pattern (12 bp):
GAACCACCAGAA
Left flanking sequence: Indices 128736 -- 129235
GACCTCACAAGATTGTGAACACTATGTATTGTACGCGGGCTAAGCCCCTATAACATCACTAAATC
AAAGCCAACGCCGCCATGATCATCACTGGCGCCGAAAGCTTAGTCACGTCGACACCGTTGGACTT
GTCACTGGAAGCAGTGCCAGTGCTCTCGGCGTCAGTAGCAGTACGCGAGTACTCCTCAACCGCAG
AACGGGAAGCCGCAGCAGCAATGCTGGAGGCCGTCTCGTTTCTGCCACCACGGTAGCCGCTGTGG
GCAAGAGCGTTGGCAGCAGCAGCAGCACCAAGACCAGCAGCACCACCAATGAGCAACCCGGAACC
AACACCCAGACCACCGCCACGACCACCGGAAGTGCCACCTGAGGTGCCACCACGGCCGCCAGACG
AGCCACCAGTGTTGCCAGTACCGCCAGAGGTACCGCCCAGAGAGCCACCGTCACCTCTGCTACCA
CCAGCACCCGAACCAGACCCAGACAGACCCGACGAACCACCGGTG
Right flanking sequence: Indices 129274 -- 129773
GCCGGAAGAACCCGAAGAGCTCCCACCGTCACCTCTGCTGCCGCCAGAGCCCGAGCCCAGCCCGC
TCGACGAACTGCTTGAGCCACCCCCACGCGACCCGGAACTGCTCGAAAAACCACCACGGCCACCT
CCGCCAAAGCCCTTCCGGCGATCAAGGGACACAAGCAGGTCAAACACCGGCAGGATGGCGAGTGC
TGCCACACTCAAAACGATAAAAAGCCAGCTAATCAACAAATTATTTCTCATTGTTGCTTAGTGGG
AAATTTTAGGCCTTTTGTTTGAACCCAATACGAGACGCTACTGTGACCGATTCCGCAGTCAGTTC
CTGCACCTGGCCCATAGGTGCATCGCCAAAAACTTTGAACGAAAAACTCACTGGAGACAAACCAA
ACCACGATGAGTTCGCCGCAACGGGAGGGTTTCTCTGTGCCTGCTTCCATCTCGCATGCTGCGTT
TGGGCAAGCGTCCGCTAAGTCCTTGGGGGTGCGCTACAACTGCGC
Found at i:132198 original size:12 final size:12
Alignment explanation
Indices: 132183--132221 Score: 60
Period size: 12 Copynumber: 3.2 Consensus size: 12
132173 TGCCCCTGGC
132183 GGTATGCCCGGT
1 GGTATGCCCGGT
*
132195 GGTATGCCTGGT
1 GGTATGCCCGGT
*
132207 GGCATGCCCGGT
1 GGTATGCCCGGT
132219 GGT
1 GGT
132222 GCCCCTGGTG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.08, C:0.23, G:0.44, T:0.26
Consensus pattern (12 bp):
GGTATGCCCGGT
Left flanking sequence: Indices 131683 -- 132182
ACAACTTGCTTGGTAAGTTCGAGTTGTCGGGTATTCCCCCTGCTCCTCGTGGTGTTCCTCAGATT
GAGGTCACTTTCGACTTGGACGCTAACGGGATTTTGAACGTGTCCGCTGTTGAGAAGGGCACTGG
TAAGACTCAAAAGATTACCATCACCAACGACAAGGGTAGATTGTCCAAGGAGGACATCGAGCGCA
TGGTCTCTGAGGCCGAGAAGTACAAGGAGGAGGACGAGGCCGAGGCTGCTAGAGTGCAGGCCAAG
AACGGTCTTGAGTCTTACGCCTACTCTTTGAAGAACTCGATCAACGACGGTGAGATGAAGGACAA
GATCGAGGCTTCGGACAAGGAGACCCTTGAGAAGGCGATCGACGAGGTTACTTCGTGGTTGGACA
CCGCCCAGAGCGCTACCACCGAGGAGTACGCCGACCGTCAAAAGGAGTTGGAGGGCGTTGCCAAC
CCCATCATGTCTAAGGCCTACGGTGCTGCTGGTGGTGCCCCTGGC
Right flanking sequence: Indices 132222 -- 132721
GCCCCTGGTGGCGGTGCTGACGAGGGCCCTTCCGTCGAGGAGGTTGACTAAATAATATGTTTAGA
AAATAACGAACGTGATATGAGACAATGACTAATTCGGTAATACGAGTATCTGTAGCTTCGGTCGG
AATGTAGATCATCGCGATAGAGGCTGAGGTGTCGAAGTGGTTACAAAACGCAGTTTGTGGCGCCT
CCAATCTACGACGTCGGAAGCGGGTCATCAGTTCCACTAGACACCTAACAACGGTGCTTGGCAGT
AGGCAATTTAACCCCTTAATTCAAGTGCCAAGTACGACACAGTTCGCCGTGCGACAACGCTCGTA
ACACGCCATTATCAACGTGGGGGTCCACAAAGGGTAGCCAAGTCACACTCGATTCAGAGGTCAGG
CACAGCAATATAATTAACGGGGGCGATTCCGTCGAATACCTCGTATCGCCCTCGTGTGTGTGATC
GTTGCTACGCAGTAACCCCCGCTTTCGCCTAAACTTGGCCACGGA
Found at i:132230 original size:24 final size:24
Alignment explanation
Indices: 132168--132233 Score: 87
Period size: 24 Copynumber: 2.8 Consensus size: 24
132158 CGGTGCTGCT
* *
132168 GGTGGTGCCCCTGGCGGTATGCCC
1 GGTGGTGCCCCTGGTGGCATGCCC
***
132192 GGTGGTATGCCTGGTGGCATGCCC
1 GGTGGTGCCCCTGGTGGCATGCCC
132216 GGTGGTGCCCCTGGTGGC
1 GGTGGTGCCCCTGGTGGC
132234 GGTGCTGACG
Statistics
Matches: 34, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
24 34 1.00
ACGTcount: A:0.05, C:0.29, G:0.44, T:0.23
Consensus pattern (24 bp):
GGTGGTGCCCCTGGTGGCATGCCC
Left flanking sequence: Indices 131668 -- 132167
CCAAGACCAAGGACAACAACTTGCTTGGTAAGTTCGAGTTGTCGGGTATTCCCCCTGCTCCTCGT
GGTGTTCCTCAGATTGAGGTCACTTTCGACTTGGACGCTAACGGGATTTTGAACGTGTCCGCTGT
TGAGAAGGGCACTGGTAAGACTCAAAAGATTACCATCACCAACGACAAGGGTAGATTGTCCAAGG
AGGACATCGAGCGCATGGTCTCTGAGGCCGAGAAGTACAAGGAGGAGGACGAGGCCGAGGCTGCT
AGAGTGCAGGCCAAGAACGGTCTTGAGTCTTACGCCTACTCTTTGAAGAACTCGATCAACGACGG
TGAGATGAAGGACAAGATCGAGGCTTCGGACAAGGAGACCCTTGAGAAGGCGATCGACGAGGTTA
CTTCGTGGTTGGACACCGCCCAGAGCGCTACCACCGAGGAGTACGCCGACCGTCAAAAGGAGTTG
GAGGGCGTTGCCAACCCCATCATGTCTAAGGCCTACGGTGCTGCT
Right flanking sequence: Indices 132234 -- 132733
GGTGCTGACGAGGGCCCTTCCGTCGAGGAGGTTGACTAAATAATATGTTTAGAAAATAACGAACG
TGATATGAGACAATGACTAATTCGGTAATACGAGTATCTGTAGCTTCGGTCGGAATGTAGATCAT
CGCGATAGAGGCTGAGGTGTCGAAGTGGTTACAAAACGCAGTTTGTGGCGCCTCCAATCTACGAC
GTCGGAAGCGGGTCATCAGTTCCACTAGACACCTAACAACGGTGCTTGGCAGTAGGCAATTTAAC
CCCTTAATTCAAGTGCCAAGTACGACACAGTTCGCCGTGCGACAACGCTCGTAACACGCCATTAT
CAACGTGGGGGTCCACAAAGGGTAGCCAAGTCACACTCGATTCAGAGGTCAGGCACAGCAATATA
ATTAACGGGGGCGATTCCGTCGAATACCTCGTATCGCCCTCGTGTGTGTGATCGTTGCTACGCAG
TAACCCCCGCTTTCGCCTAAACTTGGCCACGGATCTCGAGGTTAT
Found at i:146063 original size:15 final size:15
Alignment explanation
Indices: 146043--146087 Score: 51
Period size: 15 Copynumber: 3.2 Consensus size: 15
146033 GAGGGGGAGC
146043 AGGTAGGTGAAGAAA
1 AGGTAGGTGAAGAAA
*
146058 AGGTAGG-G--GAGA
1 AGGTAGGTGAAGAAA
*
146070 AGGTGGGTGAAGAAA
1 AGGTAGGTGAAGAAA
146085 AGG
1 AGG
146088 AAGGGGACCA
Statistics
Matches: 24, Mismatches: 3, Indels: 6
0.73 0.09 0.18
Matches are distributed among these distances:
12 9 0.38
13 1 0.04
14 1 0.04
15 13 0.54
ACGTcount: A:0.40, C:0.00, G:0.49, T:0.11
Consensus pattern (15 bp):
AGGTAGGTGAAGAAA
Left flanking sequence: Indices 145543 -- 146042
GGCCCACGGGTCGTTCGCCACAAACCATTGCATCAAGTGCAGTAAAGAAATGGACAATGCCACAC
TTAAAGCAATTATCGACAACCACGACATCCCCCGGTGCAGTTGTGGTCGGCTTGTGAAGCCGGAC
ATCACGTTCTTTGGCGAGGGGTTGCCTGAGCGGTTCTTTGACTTGTGGGAGGAGGACGGAGACGC
GGTGGAGTTTGCCATGGTGGTGGGAACCTCGCTCCAGGTGCATCCGTTTGCATCTCTTCCCGAGG
AGGTGTCGCGGTCGGTGCCGCGGGTGCTCATCAACAACGTCCGAGTGGGCAGTTTTAAGCGGAAG
AAGGATGCGGTGATTGTGGGGGACATCGAGGATGTGGTCGATAAGATGGTGCGGAAGTTGGGATG
GGAGGAGGAGTTGCAGAAGGAGATGGGGGCGGTGAAGGCCCACGAGACGGCAAAGGAGAAGGCAA
TTGAGGTGGCGGAGGAGGTGGCAAAGGCCGCAGAGGAGGGGGAGC
Right flanking sequence: Indices 146088 -- 146587
AAGGGGACCAGGTGAGTGAAAACTTGGAAAAATCTGGAGAAAAGAGAGAAAAGAGTGGGGCCAAG
ACTCAGGACAAGACTAAAGAGGGTGCAATTGCCGCCGATAAACCTAATGATGCGGATGATAACAC
TACTGACGACCTCGCGAACGAGATTAACCGACTCAAGATTTAGTGCCATTGTACATTCGCCAAGG
GAACCGCTGATGGGCCCATTGTGATCGCAATATTATCTATAGTCTGGGACAATTGTAGCATACAC
CGATGAAACGGGACCAAATAATAATGGAATGACATGGATTGAATCACTTTCGTCTGTACAATCTA
TAAAAGAACCGCATATTTTCTAACTTCATCGGGTAGTCGGCCTCTTTGACGCGATACCAGCACGA
CTCGCTGTCGGAAACCACCTCCCACGCTCCGTTATTTTCTCCGCGCTTGCCGACAAGGATCATGT
CCACCAAAAACTGGACAGGGAACTTTTTCGAGCCAATCTCGATGT
Found at i:146101 original size:27 final size:27
Alignment explanation
Indices: 146031--146107 Score: 100
Period size: 27 Copynumber: 2.9 Consensus size: 27
146021 AAGGCCGCAG
* *
146031 AGGAGGGGGAGCAGGTAGGTGAAGAAA
1 AGGAAGGGGAGCAGGTGGGTGAAGAAA
* *
146058 AGGTAGGGGAGAAGGTGGGTGAAGAAA
1 AGGAAGGGGAGCAGGTGGGTGAAGAAA
* *
146085 AGGAAGGGGACCAGGTGAGTGAA
1 AGGAAGGGGAGCAGGTGGGTGAA
146108 AACTTGGAAA
Statistics
Matches: 42, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 42 1.00
ACGTcount: A:0.36, C:0.04, G:0.51, T:0.09
Consensus pattern (27 bp):
AGGAAGGGGAGCAGGTGGGTGAAGAAA
Left flanking sequence: Indices 145531 -- 146030
CCTCATCGTCGAGGCCCACGGGTCGTTCGCCACAAACCATTGCATCAAGTGCAGTAAAGAAATGG
ACAATGCCACACTTAAAGCAATTATCGACAACCACGACATCCCCCGGTGCAGTTGTGGTCGGCTT
GTGAAGCCGGACATCACGTTCTTTGGCGAGGGGTTGCCTGAGCGGTTCTTTGACTTGTGGGAGGA
GGACGGAGACGCGGTGGAGTTTGCCATGGTGGTGGGAACCTCGCTCCAGGTGCATCCGTTTGCAT
CTCTTCCCGAGGAGGTGTCGCGGTCGGTGCCGCGGGTGCTCATCAACAACGTCCGAGTGGGCAGT
TTTAAGCGGAAGAAGGATGCGGTGATTGTGGGGGACATCGAGGATGTGGTCGATAAGATGGTGCG
GAAGTTGGGATGGGAGGAGGAGTTGCAGAAGGAGATGGGGGCGGTGAAGGCCCACGAGACGGCAA
AGGAGAAGGCAATTGAGGTGGCGGAGGAGGTGGCAAAGGCCGCAG
Right flanking sequence: Indices 146108 -- 146607
AACTTGGAAAAATCTGGAGAAAAGAGAGAAAAGAGTGGGGCCAAGACTCAGGACAAGACTAAAGA
GGGTGCAATTGCCGCCGATAAACCTAATGATGCGGATGATAACACTACTGACGACCTCGCGAACG
AGATTAACCGACTCAAGATTTAGTGCCATTGTACATTCGCCAAGGGAACCGCTGATGGGCCCATT
GTGATCGCAATATTATCTATAGTCTGGGACAATTGTAGCATACACCGATGAAACGGGACCAAATA
ATAATGGAATGACATGGATTGAATCACTTTCGTCTGTACAATCTATAAAAGAACCGCATATTTTC
TAACTTCATCGGGTAGTCGGCCTCTTTGACGCGATACCAGCACGACTCGCTGTCGGAAACCACCT
CCCACGCTCCGTTATTTTCTCCGCGCTTGCCGACAAGGATCATGTCCACCAAAAACTGGACAGGG
AACTTTTTCGAGCCAATCTCGATGTTGGAATAGGAACCAGCACTC
Found at i:152693 original size:2 final size:2
Alignment explanation
Indices: 152686--152717 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
152676 TGGATAGGGG
*
152686 GA GA GA GA AA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
152718 TATGGTAGGT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.53, C:0.00, G:0.47, T:0.00
Consensus pattern (2 bp):
GA
Left flanking sequence: Indices 152186 -- 152685
AGGCCGGTGACGTGGTGTTGAAGAACCCCGAGCTCGAGCGCGGCGCCTTCAACCAGCGCAACTGG
TGTGCCGTCTACGCCGGCAAGACCTCCGGGTTTGAGTACGTCCAGGGTCTTTTGGGCAAGATCAT
GCAGACCATGCGTACTAAGTGGTTGGAGGACCCCAAGAAGGACAACGGTCGGGGCTACTGGATTG
CCGAAGACAACAACCCTACCTTCTTTGACGGCCGTGGCGCCAAGGTCTACTTCCGGGCCGGCGAG
GGCGCTGCCGACCAGCACATCGGGTCGATTGGTGTGTTGCACCCCGAGGTGTTGAACCACTTTGA
CCTTCCCTTCGCCGCGTCGTCGGTGGAGATCAACACCGAGGTGTTTTTGTAAGCTACGACACTCT
AATACATGTACATTATAATGAAAATGTGTATTCACTGGAAATATACCGAAACCAAGACCGAATGT
AAATCAGGCTAGTAAATCAGATGGTAAAATAAAGATGGATAGGGG
Right flanking sequence: Indices 152718 -- 153217
TATGGTAGGTGATTGGGGGTTAGTTGTTTGTGGATGAAAGGAAAGGTAGATTGTCAAGAAGCGTC
TGATTCAGGGAAGGGGGACGGGGACTAATCTTCTATGTTGCCAATCGATAGTCCAGTTGCCGTTC
CCGTGCCCGTGGGTGGAGTTGTTATGGGGTCTCCAGTGGTGGTGAGACCCGTGGTCTTGGTCGTT
GTGATTGTCGTGTCCAGCGTTGCTGCCATGGGAACCGTGATCAGAGATATCTTTGTCATCCTGAC
CTTTGTGGTTGCCCTTGTTGTTATCCTTTTCGGGTGCTTGTTCCTTCAAGTCAGAGTTCTGGTTG
TTTTCGGTGTTTTGGTCGTCCTGAGCTCCGGAGCCAGTGTTTTCCAGGTTTTCCGAGCCCTCATC
CAGGCCACCAGACCCATTGCTCGCACCGTTGTCTTCGGTCTGGCCTTCAGTCTGGCCTTCAGTCT
GGCCGCCAGTGTTTTGGTCGGGGGAACCGTCAGTCTGGCCATCAG
Found at i:153182 original size:12 final size:12
Alignment explanation
Indices: 153140--153176 Score: 65
Period size: 12 Copynumber: 3.1 Consensus size: 12
153130 GCACCGTTGT
*
153140 CTTCGGTCTGGC
1 CTTCAGTCTGGC
153152 CTTCAGTCTGGC
1 CTTCAGTCTGGC
153164 CTTCAGTCTGGC
1 CTTCAGTCTGGC
153176 C
1 C
153177 GCCAGTGTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 24 1.00
ACGTcount: A:0.05, C:0.35, G:0.27, T:0.32
Consensus pattern (12 bp):
CTTCAGTCTGGC
Left flanking sequence: Indices 152640 -- 153139
TAAATCAGGCTAGTAAATCAGATGGTAAAATAAAGATGGATAGGGGGAGAGAGAAAGAGAGAGAG
AGAGAGAGAGAGATATGGTAGGTGATTGGGGGTTAGTTGTTTGTGGATGAAAGGAAAGGTAGATT
GTCAAGAAGCGTCTGATTCAGGGAAGGGGGACGGGGACTAATCTTCTATGTTGCCAATCGATAGT
CCAGTTGCCGTTCCCGTGCCCGTGGGTGGAGTTGTTATGGGGTCTCCAGTGGTGGTGAGACCCGT
GGTCTTGGTCGTTGTGATTGTCGTGTCCAGCGTTGCTGCCATGGGAACCGTGATCAGAGATATCT
TTGTCATCCTGACCTTTGTGGTTGCCCTTGTTGTTATCCTTTTCGGGTGCTTGTTCCTTCAAGTC
AGAGTTCTGGTTGTTTTCGGTGTTTTGGTCGTCCTGAGCTCCGGAGCCAGTGTTTTCCAGGTTTT
CCGAGCCCTCATCCAGGCCACCAGACCCATTGCTCGCACCGTTGT
Right flanking sequence: Indices 153177 -- 153676
GCCAGTGTTTTGGTCGGGGGAACCGTCAGTCTGGCCATCAGTGTTTTGATCGGGGGAACCGCCAG
TCTGGTCACCAGCGCCGTTGCCAGTTTCAGTGTCCTGCCCTTGGGTGTCTTCGTTACCGTTCTGG
CCACCAGTGTTCTGATCAGAACCATCGGTCTGACCACCAGCACCATTGGAATCGTCCAACCCGTT
CTGGTCTTCACCAGTCTCGCCCTGACCCTTGCCGTGGTCGGGACGGGTACCTTTATGGTCCCCTG
GGCCCTTTCCACCGTGGCCACCGTGGCCACCGTTGTGACCCTGGTTCTGAGCGGTAGTGGTCACA
ACCAGCGTAACAGTTATCGTGGTGGGGATATCCGAGACTTCGGTAGTAGTGATCACATCGGTGGT
GGTCATGGTGGTGAGGTTACCATAGAACGTCTTTGAGCTCAGTGACAGGTTGTAAAATGCAGTGG
GCGAGAGAGTAGGCACCTCCTCAGTGGGCTGGTAGGCAGACGAGT
Found at i:153219 original size:36 final size:36
Alignment explanation
Indices: 153166--153253 Score: 131
Period size: 36 Copynumber: 2.4 Consensus size: 36
153156 AGTCTGGCCT
* *
153166 TCAGTCTGGCCGCCAGTGTTTTGGTCGGGGGAACCG
1 TCAGTCTGGCCACCAGTGTTTTGATCGGGGGAACCG
*
153202 TCAGTCTGGCCATCAGTGTTTTGATCGGGGGAACCG
1 TCAGTCTGGCCACCAGTGTTTTGATCGGGGGAACCG
* *
153238 CCAGTCTGGTCACCAG
1 TCAGTCTGGCCACCAG
153254 CGCCGTTGCC
Statistics
Matches: 46, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
36 46 1.00
ACGTcount: A:0.15, C:0.26, G:0.34, T:0.25
Consensus pattern (36 bp):
TCAGTCTGGCCACCAGTGTTTTGATCGGGGGAACCG
Left flanking sequence: Indices 152666 -- 153165
AAAATAAAGATGGATAGGGGGAGAGAGAAAGAGAGAGAGAGAGAGAGAGAGATATGGTAGGTGAT
TGGGGGTTAGTTGTTTGTGGATGAAAGGAAAGGTAGATTGTCAAGAAGCGTCTGATTCAGGGAAG
GGGGACGGGGACTAATCTTCTATGTTGCCAATCGATAGTCCAGTTGCCGTTCCCGTGCCCGTGGG
TGGAGTTGTTATGGGGTCTCCAGTGGTGGTGAGACCCGTGGTCTTGGTCGTTGTGATTGTCGTGT
CCAGCGTTGCTGCCATGGGAACCGTGATCAGAGATATCTTTGTCATCCTGACCTTTGTGGTTGCC
CTTGTTGTTATCCTTTTCGGGTGCTTGTTCCTTCAAGTCAGAGTTCTGGTTGTTTTCGGTGTTTT
GGTCGTCCTGAGCTCCGGAGCCAGTGTTTTCCAGGTTTTCCGAGCCCTCATCCAGGCCACCAGAC
CCATTGCTCGCACCGTTGTCTTCGGTCTGGCCTTCAGTCTGGCCT
Right flanking sequence: Indices 153254 -- 153753
CGCCGTTGCCAGTTTCAGTGTCCTGCCCTTGGGTGTCTTCGTTACCGTTCTGGCCACCAGTGTTC
TGATCAGAACCATCGGTCTGACCACCAGCACCATTGGAATCGTCCAACCCGTTCTGGTCTTCACC
AGTCTCGCCCTGACCCTTGCCGTGGTCGGGACGGGTACCTTTATGGTCCCCTGGGCCCTTTCCAC
CGTGGCCACCGTGGCCACCGTTGTGACCCTGGTTCTGAGCGGTAGTGGTCACAACCAGCGTAACA
GTTATCGTGGTGGGGATATCCGAGACTTCGGTAGTAGTGATCACATCGGTGGTGGTCATGGTGGT
GAGGTTACCATAGAACGTCTTTGAGCTCAGTGACAGGTTGTAAAATGCAGTGGGCGAGAGAGTAG
GCACCTCCTCAGTGGGCTGGTAGGCAGACGAGTTGCCAGCCAAGGACAGAGACAAGATCGGGAGG
ATCAGAGCGCTCGTGGGCACAACAGTCGTGAAATCAGTCCCCGAA
Found at i:153459 original size:9 final size:9
Alignment explanation
Indices: 153445--153469 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
153435 TGGGCCCTTT
153445 CCACCGTGG
1 CCACCGTGG
153454 CCACCGTGG
1 CCACCGTGG
153463 CCACCGT
1 CCACCGT
153470 TGTGACCCTG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.12, C:0.48, G:0.28, T:0.12
Consensus pattern (9 bp):
CCACCGTGG
Left flanking sequence: Indices 152945 -- 153444
AACCGTGATCAGAGATATCTTTGTCATCCTGACCTTTGTGGTTGCCCTTGTTGTTATCCTTTTCG
GGTGCTTGTTCCTTCAAGTCAGAGTTCTGGTTGTTTTCGGTGTTTTGGTCGTCCTGAGCTCCGGA
GCCAGTGTTTTCCAGGTTTTCCGAGCCCTCATCCAGGCCACCAGACCCATTGCTCGCACCGTTGT
CTTCGGTCTGGCCTTCAGTCTGGCCTTCAGTCTGGCCGCCAGTGTTTTGGTCGGGGGAACCGTCA
GTCTGGCCATCAGTGTTTTGATCGGGGGAACCGCCAGTCTGGTCACCAGCGCCGTTGCCAGTTTC
AGTGTCCTGCCCTTGGGTGTCTTCGTTACCGTTCTGGCCACCAGTGTTCTGATCAGAACCATCGG
TCTGACCACCAGCACCATTGGAATCGTCCAACCCGTTCTGGTCTTCACCAGTCTCGCCCTGACCC
TTGCCGTGGTCGGGACGGGTACCTTTATGGTCCCCTGGGCCCTTT
Right flanking sequence: Indices 153470 -- 153969
TGTGACCCTGGTTCTGAGCGGTAGTGGTCACAACCAGCGTAACAGTTATCGTGGTGGGGATATCC
GAGACTTCGGTAGTAGTGATCACATCGGTGGTGGTCATGGTGGTGAGGTTACCATAGAACGTCTT
TGAGCTCAGTGACAGGTTGTAAAATGCAGTGGGCGAGAGAGTAGGCACCTCCTCAGTGGGCTGGT
AGGCAGACGAGTTGCCAGCCAAGGACAGAGACAAGATCGGGAGGATCAGAGCGCTCGTGGGCACA
ACAGTCGTGAAATCAGTCCCCGAATGACTCAAACCATTGTCCGATTGTTCCAACAAGGCACCAGT
CGCCGGTGTCTGCACCAGAGGAGAGGGAACCGGGGCTATAGGCGCCGCGAGGGCAACGGCTGCAA
AAAGGATAACAAATTTCATGAAAGGAGTGACTAAAGTTCGTTAAGGATACCCGTAGGTGCCCTCC
ATTTAAATATGTTAAGTGTACAGCCACCCTCGTGGGTCTAGGCCA
Found at i:160279 original size:30 final size:30
Alignment explanation
Indices: 160243--160302 Score: 104
Period size: 30 Copynumber: 2.0 Consensus size: 30
160233 TTACCTGCTG
160243 CTGCTGGTAGTACCCGCCCTG-GGGAGGGCC
1 CTGCTGGTAGTACCCGCCCTGAGGG-GGGCC
160273 CTGCTGGTAGTACCCGCCCTGAGGGGGGCC
1 CTGCTGGTAGTACCCGCCCTGAGGGGGGCC
160303 GCCGTAGCCT
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
30 26 0.90
31 3 0.10
ACGTcount: A:0.10, C:0.33, G:0.40, T:0.17
Consensus pattern (30 bp):
CTGCTGGTAGTACCCGCCCTGAGGGGGGCC
Left flanking sequence: Indices 159743 -- 160242
CACGACATGGCGCAACAACCGCGCCTTGCCCAATCGATTGAACCGGCGGCTCACCTGACACACCC
GCACACAATCCACCTGGTGCAAGTGGTCGAAAATGGTGACGAGGATCTCGTCGGGGAGGTCGACA
CCAGGGGTCTCAGGGGCAATGGGGGTAAGCTTGGCAGCGATCTCGGCCTCGAGCCGCCGCCGCAT
GTCCGCCACCATGTGGTCGAACACTGCGAGCACCTCGTCTGCCATGGTGACCGGGGTGCGTTGTG
TCCCGTTGCGATTAAACACGCACCGAGCCGCGTTCGCGATGAAAAGCTAGAAATGTGTGTATTAG
GTATGTAACGAGCAGGGTCTAGAACAACATCTCGCAACAGAAAATGGCGGCGAGACAACCGCAGA
AGGTGCCACAGCACCCGCAACCGTCGCTCTGGGGCTGTTGCTGGACGTAAACGGGCTATCGTTAG
TAGGGATCAAGCGATCAATGCAAATAGGAATTGACTTACCTGCTG
Right flanking sequence: Indices 160303 -- 160802
GCCGTAGCCTTGCTGGTATCCTTGTTGGTAAGACATGGGAGAATTAAACTATAATTTTGTTTTTG
TTTCGTCAAGGGGTGGTGCGGTGCGTGCAGGAATTAGTGCTGGCGACACCAGTCGATGCCGTCAA
CCGTGCCGACCCGGCTTCGGCTTAGACGCACTGCCTGTTTCATTAGAGAGGGGCTTGTCAACGGT
GACGAGAAAAAGTAATTTACGAGCTGCACCGAACCACCTGGAGCTAGTAGTTTAATGGCTCGCCG
CTACCCCACTCTCCACTTTTAGACACTAACACGCTTTGCTGATCCACACTCCACTGCTCTATTCC
CCACCGATCCACTTTACTACGTCAGCACGGCTCAGCCTTGTTCACAAAGCCCGTCGCGGGGGTCA
GGTGCACCCGACCAAGCTCATGCTCGCGACCACGCACCACCGCATGACCACCGGGGCCCCACCCA
CCGTTGCCACCGGGCCCCTCCCGTCAACCTGGCCCGGGATGGCAC
Found at i:171520 original size:9 final size:9
Alignment explanation
Indices: 171516--171727 Score: 197
Period size: 9 Copynumber: 24.2 Consensus size: 9
171506 GGAGGACAAA
171516 AAGGAGAAG
1 AAGGAGAAG
* *
171525 ATGGAAAAG
1 AAGGAGAAG
*
171534 AAGGAAAAG
1 AAGGAGAAG
171543 AAGGAGAAG
1 AAGGAGAAG
171552 AAGGAGAAG
1 AAGGAGAAG
171561 AAGGAGAAG
1 AAGGAGAAG
171570 AAGGAGAAG
1 AAGGAGAAG
171579 AAGGAGAAG
1 AAGGAGAAG
*
171588 AAGGACAAG
1 AAGGAGAAG
171597 AA--AG-AG
1 AAGGAGAAG
171603 AAGGAGAAG
1 AAGGAGAAG
*
171612 ACA-GATAAG
1 A-AGGAGAAG
171621 AAGGAGAAG
1 AAGGAGAAG
*
171630 AAGGAGAAA
1 AAGGAGAAG
*
171639 AAAGAGAAG
1 AAGGAGAAG
*
171648 -A-CA-AAG
1 AAGGAGAAG
*
171654 AAAGAGAAG
1 AAGGAGAAG
*
171663 AAAGAGAAG
1 AAGGAGAAG
* *
171672 AAAGAAAAG
1 AAGGAGAAG
*
171681 ATA-GACAAG
1 A-AGGAGAAG
*
171690 AAGGAAAAG
1 AAGGAGAAG
*
171699 AAGGAGAAA
1 AAGGAGAAG
*
171708 AAGGAAAAG
1 AAGGAGAAG
*
171717 AAGGACAAG
1 AAGGAGAAG
171726 AA
1 AA
171728 CACTACCCCC
Statistics
Matches: 172, Mismatches: 21, Indels: 20
0.81 0.10 0.09
Matches are distributed among these distances:
6 7 0.04
7 3 0.02
8 6 0.03
9 154 0.90
10 2 0.01
ACGTcount: A:0.61, C:0.02, G:0.35, T:0.01
Consensus pattern (9 bp):
AAGGAGAAG
Left flanking sequence: Indices 171016 -- 171515
AGCGTTTGTGCGGCTTTCGCGGTGAAAGAACCTCCGGTTAGCGGCCCGGGACATCGGGTATGCGA
TGAGCGCATCCCGATCAGTTAGAGGCCATGAACGCTCGAGCCTATTTGCAGCTGTTTGGCTGGAA
AGATGGGGAGGCGCTCAAGAAAGGCGGGCTCAAGAAGCCGATCCTTGTGAAGCACAAGAAGGACA
CGCGAGGGCTCGGCGGCGACCGCCAGGACAGCGATATGTGGTGGGAGCAGTTGTTTGACGGGTCG
CTCAAGAACATGGAGGTGTCTTCGCTGGCGGGCGAGGTGAAGATCAACACCAACGACGATAAGGT
GGCCTACGATATGCGGAAGCGCACCCTGCCGCTATATCGCATGTTTGTTAAGGGTGAAGGCTTGG
CTGGTACCGAAGGGAAGACCAGTCTTGAGAAGTCTCAAGAGATCGATCGGGCCGCGATGGCCAAG
GACATGGACAAGGCGTTCCATGTAGAGGGGAAGGAGGAGGACAAA
Right flanking sequence: Indices 171728 -- 172227
CACTACCCCCACCGAGTCTACCCCCACCCTAAAACGCTCCCGCAGCACCGACTCCAAACCCTCGA
AAAAATCAAAATCGTCATAGATGCATCGTGCGCGGGCGCCTAACCCATGCACAAATAAACTCGCG
TACCTAAACCGTGTAGCCATTCCCCCCATGCAAACGGCAGTGCGGGCCACGATCGCCGTTGTTGT
TCTAGCGGTGGGGCTCCGCCACTTGTCCCACGTGGTGTGGATGCTTGTGGGGATGCTTGTACCCC
TCGTGGTGGTGGCACGCCTCCTCGTCGCCAAGGGGCACTACGTGCCGCCCCCTCCTCCCGTGCGA
CCGCCTCCTCCGATTGCCGCTCGGAAGGACTCGGGCTCGAGACAGCCGGTGTTTCCCGAGTCACG
GCTCACTTCGCAACAGCTCGACGGGTTCATTGACCTCATCCTTGGCGAGTTTGTCGAGTCGTGGT
TCGCGCTGATCCTGCTGGATCCCGGGTTTGTTGATGCCATCCGGC
Found at i:171672 original size:24 final size:24
Alignment explanation
Indices: 171627--171672 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
171617 TAAGAAGGAG
*
171627 AAGAAGGAGAAAAAAGAGAAGACA
1 AAGAAAGAGAAAAAAGAGAAGACA
*
171651 AAGAAAGAGAAGAAAGAGAAGA
1 AAGAAAGAGAAAAAAGAGAAGA
171673 AAGAAAAGAT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.67, C:0.02, G:0.30, T:0.00
Consensus pattern (24 bp):
AAGAAAGAGAAAAAAGAGAAGACA
Left flanking sequence: Indices 171127 -- 171626
TGCAGCTGTTTGGCTGGAAAGATGGGGAGGCGCTCAAGAAAGGCGGGCTCAAGAAGCCGATCCTT
GTGAAGCACAAGAAGGACACGCGAGGGCTCGGCGGCGACCGCCAGGACAGCGATATGTGGTGGGA
GCAGTTGTTTGACGGGTCGCTCAAGAACATGGAGGTGTCTTCGCTGGCGGGCGAGGTGAAGATCA
ACACCAACGACGATAAGGTGGCCTACGATATGCGGAAGCGCACCCTGCCGCTATATCGCATGTTT
GTTAAGGGTGAAGGCTTGGCTGGTACCGAAGGGAAGACCAGTCTTGAGAAGTCTCAAGAGATCGA
TCGGGCCGCGATGGCCAAGGACATGGACAAGGCGTTCCATGTAGAGGGGAAGGAGGAGGACAAAA
AGGAGAAGATGGAAAAGAAGGAAAAGAAGGAGAAGAAGGAGAAGAAGGAGAAGAAGGAGAAGAAG
GAGAAGAAGGACAAGAAAGAGAAGGAGAAGACAGATAAGAAGGAG
Right flanking sequence: Indices 171673 -- 172172
AAGAAAAGATAGACAAGAAGGAAAAGAAGGAGAAAAAGGAAAAGAAGGACAAGAACACTACCCCC
ACCGAGTCTACCCCCACCCTAAAACGCTCCCGCAGCACCGACTCCAAACCCTCGAAAAAATCAAA
ATCGTCATAGATGCATCGTGCGCGGGCGCCTAACCCATGCACAAATAAACTCGCGTACCTAAACC
GTGTAGCCATTCCCCCCATGCAAACGGCAGTGCGGGCCACGATCGCCGTTGTTGTTCTAGCGGTG
GGGCTCCGCCACTTGTCCCACGTGGTGTGGATGCTTGTGGGGATGCTTGTACCCCTCGTGGTGGT
GGCACGCCTCCTCGTCGCCAAGGGGCACTACGTGCCGCCCCCTCCTCCCGTGCGACCGCCTCCTC
CGATTGCCGCTCGGAAGGACTCGGGCTCGAGACAGCCGGTGTTTCCCGAGTCACGGCTCACTTCG
CAACAGCTCGACGGGTTCATTGACCTCATCCTTGGCGAGTTTGTC
Found at i:174686 original size:18 final size:18
Alignment explanation
Indices: 174633--174689 Score: 105
Period size: 18 Copynumber: 3.2 Consensus size: 18
174623 CCCTCCTCAA
*
174633 CAGCAGTACCCGCCGCAA
1 CAGCAGTACCCGCCGCAG
174651 CAGCAGTACCCGCCGCAG
1 CAGCAGTACCCGCCGCAG
174669 CAGCAGTACCCGCCGCAG
1 CAGCAGTACCCGCCGCAG
174687 CAG
1 CAG
174690 TACGGGGGTG
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
18 38 1.00
ACGTcount: A:0.25, C:0.44, G:0.26, T:0.05
Consensus pattern (18 bp):
CAGCAGTACCCGCCGCAG
Left flanking sequence: Indices 174133 -- 174632
CCAAGGTGTTCGCCATGATGCAGCACGACCCCCTCAACCGCCACTTGGTGCTTCTGATCGCCGAC
GCAGTGTTGGGCGACATGTTCTGTGTGCACGATGAATGATCTCGCTTAGCCTCCACTACGCCACA
AAACATCATTCGCACTCGCCGCCTGTATATAGCACGACAAATAAAATAGCAAATCAGACCTGGGT
ACCCCGCCATGAAGTTGAACGACAAGAGCCAGGAGCCGCCGGTGCCCGATGGGTACTTGGCCAAG
TGGGACAGCAACTACGGCAGATGGTACTTTGTCAACTTGGAGACGAAAAAGTCTCAATGGGACTT
GCCCAAGGCGGACGACATCAAGCCTCCTCCGTACGCCCCTGACGATAAGCCCCAGGCACCTCCAC
GGGCCTCTGCTTCTCCTCCCCAGCAGACCGCACTGCGCAACAGCAACCAGGACCAGTCCGATCGC
GGGTGGTTTTCGGGGAAGAAGCCTACCAACAACTACCCTCCTCAA
Right flanking sequence: Indices 174690 -- 175189
TACGGGGGTGGGTACGGCCCGCCCCAGGGGTTTGGTGGTCCCGGTTACGGCCCTCCCCAGGGCTA
CTACGGGCCTCCCCAGGGGTACGGTGGGCCCGGTTACGGCCCTCCTCCTCAGCAGTACTACCAGC
AGCCGCCTAGACGCGGTGGTGGCATGGGTGCCGGGACGGGTGCATTGCTTGGTGCCGGTGGTGGT
ATGCTTGGTGGTATGATGTTGATGAACGGGATTAACGACATGCAGCATGACGCCTACATGGATGG
CAGAGAGGACCAGCAGGACTTTGACGACGGTGGTGGTGGTGATTTCGATGGTGGTGACTTCGGTG
GAGACTTCTAGGTGTACGTAAGAATCAACAAGAACAATGGATAGACTACAATACGATCAGCCGGG
TTCGGTGGTCGTAATTGACGTTCTCTCGCAGGTGGCAAAAAATGCAAAAAGATATCGACAACTGC
AGGACTCGAACCTACGCGCTCAGAGAGCAAAAGATTTCTAATCTT
Found at i:174784 original size:21 final size:21
Alignment explanation
Indices: 174736--174777 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
174726 GGTCCCGGTT
* *
174736 ACGGCCCTCCCCAGGGCTACT
1 ACGGGCCTCCCCAGGGCTACG
*
174757 ACGGGCCTCCCCAGGGGTACG
1 ACGGGCCTCCCCAGGGCTACG
174778 GTGGGCCCGG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.14, C:0.43, G:0.31, T:0.12
Consensus pattern (21 bp):
ACGGGCCTCCCCAGGGCTACG
Left flanking sequence: Indices 174236 -- 174735
ATCTCGCTTAGCCTCCACTACGCCACAAAACATCATTCGCACTCGCCGCCTGTATATAGCACGAC
AAATAAAATAGCAAATCAGACCTGGGTACCCCGCCATGAAGTTGAACGACAAGAGCCAGGAGCCG
CCGGTGCCCGATGGGTACTTGGCCAAGTGGGACAGCAACTACGGCAGATGGTACTTTGTCAACTT
GGAGACGAAAAAGTCTCAATGGGACTTGCCCAAGGCGGACGACATCAAGCCTCCTCCGTACGCCC
CTGACGATAAGCCCCAGGCACCTCCACGGGCCTCTGCTTCTCCTCCCCAGCAGACCGCACTGCGC
AACAGCAACCAGGACCAGTCCGATCGCGGGTGGTTTTCGGGGAAGAAGCCTACCAACAACTACCC
TCCTCAACAGCAGTACCCGCCGCAACAGCAGTACCCGCCGCAGCAGCAGTACCCGCCGCAGCAGT
ACGGGGGTGGGTACGGCCCGCCCCAGGGGTTTGGTGGTCCCGGTT
Right flanking sequence: Indices 174778 -- 175277
GTGGGCCCGGTTACGGCCCTCCTCCTCAGCAGTACTACCAGCAGCCGCCTAGACGCGGTGGTGGC
ATGGGTGCCGGGACGGGTGCATTGCTTGGTGCCGGTGGTGGTATGCTTGGTGGTATGATGTTGAT
GAACGGGATTAACGACATGCAGCATGACGCCTACATGGATGGCAGAGAGGACCAGCAGGACTTTG
ACGACGGTGGTGGTGGTGATTTCGATGGTGGTGACTTCGGTGGAGACTTCTAGGTGTACGTAAGA
ATCAACAAGAACAATGGATAGACTACAATACGATCAGCCGGGTTCGGTGGTCGTAATTGACGTTC
TCTCGCAGGTGGCAAAAAATGCAAAAAGATATCGACAACTGCAGGACTCGAACCTACGCGCTCAG
AGAGCAAAAGATTTCTAATCTTTCTCCTTAACCACTCGGACAAGTTGCCTTGATGAAAAAATATT
GTTTTGGGTGAATCAGGTTGGGGACAGCCAAAAAGAGGGTTTTGA
Found at i:184927 original size:12 final size:12
Alignment explanation
Indices: 184912--184941 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
184902 AAATCAAACC
184912 TGAAACATGATG
1 TGAAACATGATG
*
184924 TGAAACCTGATG
1 TGAAACATGATG
184936 TGAAAC
1 TGAAAC
184942 GTGTGCCTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.40, C:0.13, G:0.23, T:0.23
Consensus pattern (12 bp):
TGAAACATGATG
Left flanking sequence: Indices 184412 -- 184911
AGTCGTTGGGGGCGGACGTGTGTATTAACTACAAGAGCGGCAACCTCAAGCAGGAGCTCGAGAAG
GCGTTGGGCGGCGAGTACGTCGACGTGTACTACGACAACGTCGGTGGCGAGCAGCTTGACCTCTG
CTTGTCCAAGGTGAAGCCGTTTGGCCGGGTGGTGGCGTGCGGTGCCATTGCTGGGTACAACGACC
ACCTGAAGATGTGGGTCAAGGCGTGGAACGAGATCATTGTCAACCGGCTCACGGTGCAGGGGTTC
ATTGTGCTGGACTTTGTGTCTGAGTGGGGCGATGCTGCTCCTGTGTTGCTCAAGGCCATCAAGGA
GGGCAAGGTCAAGATGGACGGCGTCACCGTGGTCGACGTCGAGGGCGACTTGAAGAAGGTGCCCG
AGGTGTGGATGAAGTTGTTTGCCGACAAGGGCCCCGGCAAGCTCATCACTAAGTTGTAGGTATAG
GAATAATGGATAGGATTGAGTCAGAACCGTAGGTGAAATCAAACC
Right flanking sequence: Indices 184942 -- 185441
GTGTGCCTAAGCTCTTTTGGACTCGGCTCTCTTGGGCTCAGCCCTCATGGGCTCGGTCGCCCTCC
TTTGCTCGGGGCGTCTCATGTTGGGGTTCGGGTGCTGGATCCACCCGTGGACCCACGCGGTGGTG
ATTCCCACGATAAACGCCATGGTGACATCATACACCAAGTTGTCGCTGTTCAGCGCACACCGGCC
ATCAGCTAACTTCTTGTCGCTCATGCATCGGTCGTTAGCAGCAGCGATTTCCACCACACATCTCA
CACAAAAGTGAAAGAACATCGTCCACAACACCATCTTGGTGAGGAGGACGCCGTTGTCGAACAAA
AGCGACAGCTGTTTGGCGGCCAGGGTGGGGAACAGCGCCTGGAAGGTGTCTGCATTGAGAAAGAA
CGACACCACAACCACGGTGACGATGAAAAGGAGCACTAGCGAGTTGGTATCCCACATACTGGTGT
GGACGAAATCTCTGGGGCTAACAATCACATGGGTAGACGACGGGT
Found at i:186125 original size:15 final size:15
Alignment explanation
Indices: 186099--186167 Score: 88
Period size: 14 Copynumber: 4.7 Consensus size: 15
186089 GGTATGTGTT
*
186099 GCAGTGATTGTTTAA
1 GCAGTGAGTGTTTAA
*
186114 GCGGTGAGTG-TTAA
1 GCAGTGAGTGTTTAA
*
186128 GCAGTGAGT-TCTAA
1 GCAGTGAGTGTTTAA
*
186142 GCAGTGCGTGTTTAA
1 GCAGTGAGTGTTTAA
186157 GCAGTGAGTGT
1 GCAGTGAGTGT
186168 GGACCTGTGA
Statistics
Matches: 45, Mismatches: 7, Indels: 4
0.80 0.12 0.07
Matches are distributed among these distances:
14 23 0.51
15 22 0.49
ACGTcount: A:0.23, C:0.10, G:0.35, T:0.32
Consensus pattern (15 bp):
GCAGTGAGTGTTTAA
Left flanking sequence: Indices 185599 -- 186098
GTTTAAATACGCGAGGTGTGTCACCACTACCATGGTGCAGCGTACAATGGGTGGATCTAGATCGG
ACGCAGGCTAACGGGGTGGTTAAACGAAGCTAGCGGGCTAATGGGGTATTAGTATTAGCTTGTTT
GTTGTGGATTGTAGCATTGGAGGCGTTCGTGTTGTGCAAGCTCAACGCAAGAGAACACACGCGAT
CGAGTTGGTGGGGTAGGCGACGCGAAGTCTAAGCATAGTGGGGATTGAGCGTAGTGTATCACTAA
TTGTAGGGCCGAGGCTTTGGGAGGCACTGGTTCAGACAGTGGAAATGGACTGATACGCATGGATC
GCGTTGGATCCGTTGTCAAGTTCCCACCTTACTACCGCTGTAAGAATGGCGCCAGGTTTGGACGG
AGAACCCCGGTCTTATGCACCGGTGTTGGGTTACTAGGCTGGCGCTTCGCTAACGGTGGCCATTG
AGTATGTAAGCAGTGAGTGTTGCAGTGATTGTTGCGGTATGTGTT
Right flanking sequence: Indices 186168 -- 186667
GGACCTGTGAGTGGTCACTGTGAGGAACTGTGAGTGAATTGTGAGTAGTATAAGGGTTATGCAAG
ACGCTTGGACATGTATTCGAATCGTCATTCTAGTCTGAGGCCTGGTTCCAGAACAGACAAGAGCA
TTCCCTCCTCACACCAGGAACCACATCCTCGATCTCAGACCAAATAACCAGTCGCCATCACTACA
TCTCCGAATTGCTTCCAACTACATTTCTCTTTTATTAGTACATTACGCAGCCACCTTCACCTTCG
GCTTCTCCGGCCGCGCCACCTTCTTCTCAAACAACGCAAACTTGAGCATAAACAACGCCGACAGC
GCCACCAGGTTGACACACTGCATCCACATCGTCAACCCCACCGAGCCCGCGGCAAAGAACGGCAA
CGCCATCACCCACTCCACCCACGCGGGCAACACGCCCTTGGGCAAGTAGAACAACACGTTTTTGC
GGAACCACACCCGGAAAAACCACACCGGCGCCGTGAGCGTCACCA
Found at i:186129 original size:14 final size:14
Alignment explanation
Indices: 186060--186167 Score: 79
Period size: 12 Copynumber: 8.0 Consensus size: 14
186050 ATTGAGTATG
186060 TAAGCAGTGAGTGT
1 TAAGCAGTGAGTGT
*
186074 T--GCAGTGATTGT
1 TAAGCAGTGAGTGT
*
186086 T--GCGGT-ATGTGT
1 TAAGCAGTGA-GTGT
*
186098 T--GCAGTGATTGTT
1 TAAGCAGTGAGTG-T
*
186111 TAAGCGGTGAGTGT
1 TAAGCAGTGAGTGT
186125 TAAGCAGTGAGT-T
1 TAAGCAGTGAGTGT
*
186138 CTAAGCAGTGCGTGTT
1 -TAAGCAGTGAGTG-T
186154 TAAGCAGTGAGTGT
1 TAAGCAGTGAGTGT
186168 GGACCTGTGA
Statistics
Matches: 76, Mismatches: 10, Indels: 16
0.75 0.10 0.16
Matches are distributed among these distances:
11 1 0.01
12 25 0.33
13 4 0.05
14 25 0.33
15 20 0.26
16 1 0.01
ACGTcount: A:0.21, C:0.09, G:0.35, T:0.34
Consensus pattern (14 bp):
TAAGCAGTGAGTGT
Left flanking sequence: Indices 185560 -- 186059
GTCAAGGGGTTTGGATGAACCGCGGGTTAAGGGGTGCTCGTTTAAATACGCGAGGTGTGTCACCA
CTACCATGGTGCAGCGTACAATGGGTGGATCTAGATCGGACGCAGGCTAACGGGGTGGTTAAACG
AAGCTAGCGGGCTAATGGGGTATTAGTATTAGCTTGTTTGTTGTGGATTGTAGCATTGGAGGCGT
TCGTGTTGTGCAAGCTCAACGCAAGAGAACACACGCGATCGAGTTGGTGGGGTAGGCGACGCGAA
GTCTAAGCATAGTGGGGATTGAGCGTAGTGTATCACTAATTGTAGGGCCGAGGCTTTGGGAGGCA
CTGGTTCAGACAGTGGAAATGGACTGATACGCATGGATCGCGTTGGATCCGTTGTCAAGTTCCCA
CCTTACTACCGCTGTAAGAATGGCGCCAGGTTTGGACGGAGAACCCCGGTCTTATGCACCGGTGT
TGGGTTACTAGGCTGGCGCTTCGCTAACGGTGGCCATTGAGTATG
Right flanking sequence: Indices 186168 -- 186667
GGACCTGTGAGTGGTCACTGTGAGGAACTGTGAGTGAATTGTGAGTAGTATAAGGGTTATGCAAG
ACGCTTGGACATGTATTCGAATCGTCATTCTAGTCTGAGGCCTGGTTCCAGAACAGACAAGAGCA
TTCCCTCCTCACACCAGGAACCACATCCTCGATCTCAGACCAAATAACCAGTCGCCATCACTACA
TCTCCGAATTGCTTCCAACTACATTTCTCTTTTATTAGTACATTACGCAGCCACCTTCACCTTCG
GCTTCTCCGGCCGCGCCACCTTCTTCTCAAACAACGCAAACTTGAGCATAAACAACGCCGACAGC
GCCACCAGGTTGACACACTGCATCCACATCGTCAACCCCACCGAGCCCGCGGCAAAGAACGGCAA
CGCCATCACCCACTCCACCCACGCGGGCAACACGCCCTTGGGCAAGTAGAACAACACGTTTTTGC
GGAACCACACCCGGAAAAACCACACCGGCGCCGTGAGCGTCACCA
Found at i:186156 original size:29 final size:28
Alignment explanation
Indices: 186111--186165 Score: 83
Period size: 29 Copynumber: 1.9 Consensus size: 28
186101 AGTGATTGTT
*
186111 TAAGCGGTGAGTGTTAAGCAGTGAGTTC
1 TAAGCAGTGAGTGTTAAGCAGTGAGTTC
*
186139 TAAGCAGTGCGTGTTTAAGCAGTGAGT
1 TAAGCAGTGAGTG-TTAAGCAGTGAGT
186166 GTGGACCTGT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
28 11 0.46
29 13 0.54
ACGTcount: A:0.25, C:0.11, G:0.35, T:0.29
Consensus pattern (28 bp):
TAAGCAGTGAGTGTTAAGCAGTGAGTTC
Left flanking sequence: Indices 185611 -- 186110
GAGGTGTGTCACCACTACCATGGTGCAGCGTACAATGGGTGGATCTAGATCGGACGCAGGCTAAC
GGGGTGGTTAAACGAAGCTAGCGGGCTAATGGGGTATTAGTATTAGCTTGTTTGTTGTGGATTGT
AGCATTGGAGGCGTTCGTGTTGTGCAAGCTCAACGCAAGAGAACACACGCGATCGAGTTGGTGGG
GTAGGCGACGCGAAGTCTAAGCATAGTGGGGATTGAGCGTAGTGTATCACTAATTGTAGGGCCGA
GGCTTTGGGAGGCACTGGTTCAGACAGTGGAAATGGACTGATACGCATGGATCGCGTTGGATCCG
TTGTCAAGTTCCCACCTTACTACCGCTGTAAGAATGGCGCCAGGTTTGGACGGAGAACCCCGGTC
TTATGCACCGGTGTTGGGTTACTAGGCTGGCGCTTCGCTAACGGTGGCCATTGAGTATGTAAGCA
GTGAGTGTTGCAGTGATTGTTGCGGTATGTGTTGCAGTGATTGTT
Right flanking sequence: Indices 186166 -- 186665
GTGGACCTGTGAGTGGTCACTGTGAGGAACTGTGAGTGAATTGTGAGTAGTATAAGGGTTATGCA
AGACGCTTGGACATGTATTCGAATCGTCATTCTAGTCTGAGGCCTGGTTCCAGAACAGACAAGAG
CATTCCCTCCTCACACCAGGAACCACATCCTCGATCTCAGACCAAATAACCAGTCGCCATCACTA
CATCTCCGAATTGCTTCCAACTACATTTCTCTTTTATTAGTACATTACGCAGCCACCTTCACCTT
CGGCTTCTCCGGCCGCGCCACCTTCTTCTCAAACAACGCAAACTTGAGCATAAACAACGCCGACA
GCGCCACCAGGTTGACACACTGCATCCACATCGTCAACCCCACCGAGCCCGCGGCAAAGAACGGC
AACGCCATCACCCACTCCACCCACGCGGGCAACACGCCCTTGGGCAAGTAGAACAACACGTTTTT
GCGGAACCACACCCGGAAAAACCACACCGGCGCCGTGAGCGTCAC
Found at i:186781 original size:21 final size:22
Alignment explanation
Indices: 186744--186786 Score: 63
Period size: 21 Copynumber: 2.0 Consensus size: 22
186734 TGAGCTCGGC
186744 GTTGAGCTTGTCGCAC-TGGCG
1 GTTGAGCTTGTCGCACTTGGCG
186765 GTTGAGCTTGGTC-CACTTGGCG
1 GTTGAGCTT-GTCGCACTTGGCG
186787 TACTGGTCCT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
21 12 0.60
22 8 0.40
ACGTcount: A:0.09, C:0.23, G:0.37, T:0.30
Consensus pattern (22 bp):
GTTGAGCTTGTCGCACTTGGCG
Left flanking sequence: Indices 186244 -- 186743
TGTATTCGAATCGTCATTCTAGTCTGAGGCCTGGTTCCAGAACAGACAAGAGCATTCCCTCCTCA
CACCAGGAACCACATCCTCGATCTCAGACCAAATAACCAGTCGCCATCACTACATCTCCGAATTG
CTTCCAACTACATTTCTCTTTTATTAGTACATTACGCAGCCACCTTCACCTTCGGCTTCTCCGGC
CGCGCCACCTTCTTCTCAAACAACGCAAACTTGAGCATAAACAACGCCGACAGCGCCACCAGGTT
GACACACTGCATCCACATCGTCAACCCCACCGAGCCCGCGGCAAAGAACGGCAACGCCATCACCC
ACTCCACCCACGCGGGCAACACGCCCTTGGGCAAGTAGAACAACACGTTTTTGCGGAACCACACC
CGGAAAAACCACACCGGCGCCGTGAGCGTCACCAAGATCGCCTGGTTGACCAAGGTGTTGACGGT
GGCCCGGTCCTTTGAAATCAGCTCCTCCACCTGCTTGAGCTCGGC
Right flanking sequence: Indices 186787 -- 187286
TACTGGTCCTGCGCCGAGATCGCCCGCTTTTCCTTGTTGAGCTGCCACAATTGGCGGCGCTTGTC
GTTGTACTCGGCGAACGCCTGGTTGACCCCGAGCTTGGGGCCCACTGCCATGTACACCTGCCAGC
CCCACTGCTGGAGCACACTCTTGCTGATGGCATTGACGATCTGCTTGGTGACTAGCACCGCAAAC
ACCAACACGAGGATGGTGTACCCGTTGAAGTCCAACCACGAAAGCATAGGTGGTGATCGATGCGC
GGCGAAAAATATGTGAGTGGGGAAGGAAGACGAGAAGTGGGTGGGTATAGGGGTAGTGGTTTGAG
AGTGTTTTACGTTGAGGGAGTCTTTTTTTTGGTCCATTGTTGTCGTGGTGGGTCACTGATCGCAC
ACGAGGTGACTAAAATGGTCGACTAAAATGGTCGACTAAAATGGTCGACTAAATGGTCGACTAAT
AATGGTCTTACTAAAAATGGAACAGGACACAAACGGTCAACGAAC
Found at i:187220 original size:26 final size:26
Alignment explanation
Indices: 187184--187257 Score: 114
Period size: 26 Copynumber: 2.8 Consensus size: 26
187174 CACACGAGGT
187184 GACTAAAATGGTCGACTAAAATGGTC
1 GACTAAAATGGTCGACTAAAATGGTC
187210 GACTAAAATGGTCGACT-AAATGGTC
1 GACTAAAATGGTCGACTAAAATGGTC
*
187235 GACTAATAATGGTCTTACTAAAA
1 GACTAA-AATGGTC-GACTAAAA
187258 ATGGAACAGG
Statistics
Matches: 44, Mismatches: 1, Indels: 4
0.90 0.02 0.08
Matches are distributed among these distances:
25 14 0.32
26 24 0.55
27 3 0.07
28 3 0.07
ACGTcount: A:0.39, C:0.15, G:0.20, T:0.26
Consensus pattern (26 bp):
GACTAAAATGGTCGACTAAAATGGTC
Left flanking sequence: Indices 186684 -- 187183
CAAGGTGTTGACGGTGGCCCGGTCCTTTGAAATCAGCTCCTCCACCTGCTTGAGCTCGGCGTTGA
GCTTGTCGCACTGGCGGTTGAGCTTGGTCCACTTGGCGTACTGGTCCTGCGCCGAGATCGCCCGC
TTTTCCTTGTTGAGCTGCCACAATTGGCGGCGCTTGTCGTTGTACTCGGCGAACGCCTGGTTGAC
CCCGAGCTTGGGGCCCACTGCCATGTACACCTGCCAGCCCCACTGCTGGAGCACACTCTTGCTGA
TGGCATTGACGATCTGCTTGGTGACTAGCACCGCAAACACCAACACGAGGATGGTGTACCCGTTG
AAGTCCAACCACGAAAGCATAGGTGGTGATCGATGCGCGGCGAAAAATATGTGAGTGGGGAAGGA
AGACGAGAAGTGGGTGGGTATAGGGGTAGTGGTTTGAGAGTGTTTTACGTTGAGGGAGTCTTTTT
TTTGGTCCATTGTTGTCGTGGTGGGTCACTGATCGCACACGAGGT
Right flanking sequence: Indices 187258 -- 187757
ATGGAACAGGACACAAACGGTCAACGAACAGTGATTTTAAATAGAGACAATAGGAACTCTTAATA
GAGACGATAGAAACTCTGAGTAGACACGATAGGAACGTTGAACAGAGATGATAGAAACTCTGAAA
GGAGACTCTGAGTAGAAAGTCCGAGTAGAGACTGAGTAGAACTCTGAGTAGAGACCGGATAGAAA
CTCTGAGTATTAGACTCTCAGTAAACTCTGAGTAGACTCTCAGTAGATTCTGAGTAGAAACCCTG
AGTAGACTCCCTTTCACACCCTTTCACTACCTCTTTATTCTATGATACACTAATATACACTCACA
GCGTTTCCTCGCCCGGGCTCGAGCCCTTGACATTGACCGCCAACGCGTCGAAAATCGCCCGCAAG
TCCGGCAGCGCCTGCTTGACAAACGGCAAGTCAAAGAACCCAAAGTCGGAGTTTTTCACAAGCTC
GGTAAACACAATGGTAAGCCCCCACGGGTGCGGCTTGGCCGCGAT
Found at i:187232 original size:12 final size:13
Alignment explanation
Indices: 187184--187248 Score: 114
Period size: 13 Copynumber: 5.0 Consensus size: 13
187174 CACACGAGGT
187184 GACTAAAATGGTC
1 GACTAAAATGGTC
187197 GACTAAAATGGTC
1 GACTAAAATGGTC
187210 GACTAAAATGGTC
1 GACTAAAATGGTC
187223 GACT-AAATGGTC
1 GACTAAAATGGTC
187235 GACTAATAATGGTC
1 GACTAA-AATGGTC
187249 TTACTAAAAA
Statistics
Matches: 50, Mismatches: 0, Indels: 3
0.94 0.00 0.06
Matches are distributed among these distances:
12 12 0.24
13 31 0.62
14 7 0.14
ACGTcount: A:0.37, C:0.15, G:0.23, T:0.25
Consensus pattern (13 bp):
GACTAAAATGGTC
Left flanking sequence: Indices 186684 -- 187183
CAAGGTGTTGACGGTGGCCCGGTCCTTTGAAATCAGCTCCTCCACCTGCTTGAGCTCGGCGTTGA
GCTTGTCGCACTGGCGGTTGAGCTTGGTCCACTTGGCGTACTGGTCCTGCGCCGAGATCGCCCGC
TTTTCCTTGTTGAGCTGCCACAATTGGCGGCGCTTGTCGTTGTACTCGGCGAACGCCTGGTTGAC
CCCGAGCTTGGGGCCCACTGCCATGTACACCTGCCAGCCCCACTGCTGGAGCACACTCTTGCTGA
TGGCATTGACGATCTGCTTGGTGACTAGCACCGCAAACACCAACACGAGGATGGTGTACCCGTTG
AAGTCCAACCACGAAAGCATAGGTGGTGATCGATGCGCGGCGAAAAATATGTGAGTGGGGAAGGA
AGACGAGAAGTGGGTGGGTATAGGGGTAGTGGTTTGAGAGTGTTTTACGTTGAGGGAGTCTTTTT
TTTGGTCCATTGTTGTCGTGGTGGGTCACTGATCGCACACGAGGT
Right flanking sequence: Indices 187249 -- 187748
TTACTAAAAATGGAACAGGACACAAACGGTCAACGAACAGTGATTTTAAATAGAGACAATAGGAA
CTCTTAATAGAGACGATAGAAACTCTGAGTAGACACGATAGGAACGTTGAACAGAGATGATAGAA
ACTCTGAAAGGAGACTCTGAGTAGAAAGTCCGAGTAGAGACTGAGTAGAACTCTGAGTAGAGACC
GGATAGAAACTCTGAGTATTAGACTCTCAGTAAACTCTGAGTAGACTCTCAGTAGATTCTGAGTA
GAAACCCTGAGTAGACTCCCTTTCACACCCTTTCACTACCTCTTTATTCTATGATACACTAATAT
ACACTCACAGCGTTTCCTCGCCCGGGCTCGAGCCCTTGACATTGACCGCCAACGCGTCGAAAATC
GCCCGCAAGTCCGGCAGCGCCTGCTTGACAAACGGCAAGTCAAAGAACCCAAAGTCGGAGTTTTT
CACAAGCTCGGTAAACACAATGGTAAGCCCCCACGGGTGCGGCTT
Found at i:187323 original size:22 final size:22
Alignment explanation
Indices: 187297--187386 Score: 92
Period size: 22 Copynumber: 4.1 Consensus size: 22
187287 AGTGATTTTA
* *
187297 AATAGAGACAATAGGAACTCTT
1 AATAGAGACGATAGGAACTCTG
*
187319 AATAGAGACGATAGAAACTCTG
1 AATAGAGACGATAGGAACTCTG
* *
187341 AGTAGACACGATAGGAACGT-TG
1 AATAGAGACGATAGGAAC-TCTG
* * *
187363 AACAGAGATGATAGAAACTCTG
1 AATAGAGACGATAGGAACTCTG
187385 AA
1 AA
187387 AGGAGACTCT
Statistics
Matches: 55, Mismatches: 11, Indels: 4
0.79 0.16 0.06
Matches are distributed among these distances:
21 1 0.02
22 53 0.96
23 1 0.02
ACGTcount: A:0.44, C:0.13, G:0.23, T:0.19
Consensus pattern (22 bp):
AATAGAGACGATAGGAACTCTG
Left flanking sequence: Indices 186797 -- 187296
GCGCCGAGATCGCCCGCTTTTCCTTGTTGAGCTGCCACAATTGGCGGCGCTTGTCGTTGTACTCG
GCGAACGCCTGGTTGACCCCGAGCTTGGGGCCCACTGCCATGTACACCTGCCAGCCCCACTGCTG
GAGCACACTCTTGCTGATGGCATTGACGATCTGCTTGGTGACTAGCACCGCAAACACCAACACGA
GGATGGTGTACCCGTTGAAGTCCAACCACGAAAGCATAGGTGGTGATCGATGCGCGGCGAAAAAT
ATGTGAGTGGGGAAGGAAGACGAGAAGTGGGTGGGTATAGGGGTAGTGGTTTGAGAGTGTTTTAC
GTTGAGGGAGTCTTTTTTTTGGTCCATTGTTGTCGTGGTGGGTCACTGATCGCACACGAGGTGAC
TAAAATGGTCGACTAAAATGGTCGACTAAAATGGTCGACTAAATGGTCGACTAATAATGGTCTTA
CTAAAAATGGAACAGGACACAAACGGTCAACGAACAGTGATTTTA
Right flanking sequence: Indices 187387 -- 187886
AGGAGACTCTGAGTAGAAAGTCCGAGTAGAGACTGAGTAGAACTCTGAGTAGAGACCGGATAGAA
ACTCTGAGTATTAGACTCTCAGTAAACTCTGAGTAGACTCTCAGTAGATTCTGAGTAGAAACCCT
GAGTAGACTCCCTTTCACACCCTTTCACTACCTCTTTATTCTATGATACACTAATATACACTCAC
AGCGTTTCCTCGCCCGGGCTCGAGCCCTTGACATTGACCGCCAACGCGTCGAAAATCGCCCGCAA
GTCCGGCAGCGCCTGCTTGACAAACGGCAAGTCAAAGAACCCAAAGTCGGAGTTTTTCACAAGCT
CGGTAAACACAATGGTAAGCCCCCACGGGTGCGGCTTGGCCGCGATGCGCCGCTCCAAGAGCACC
CGGGTGATGATCTCCTGGGTAAACGCACGGATCTCAGGCGACGACCAGATCAGGTGCGACAGGAA
AAAGTAGAGAATGATCCCGACAAACCAGTGGGTGTGGGCGTTGGG
Found at i:187427 original size:24 final size:23
Alignment explanation
Indices: 187395--187442 Score: 69
Period size: 23 Copynumber: 2.0 Consensus size: 23
187385 AAAGGAGACT
*
187395 CTGAGTAGAAAGTCCGAGTAGAGA
1 CTGAGTAG-AACTCCGAGTAGAGA
*
187419 CTGAGTAGAACTCTGAGTAGAGA
1 CTGAGTAGAACTCCGAGTAGAGA
187442 C
1 C
187443 CGGATAGAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
23 14 0.64
24 8 0.36
ACGTcount: A:0.35, C:0.15, G:0.31, T:0.19
Consensus pattern (23 bp):
CTGAGTAGAACTCCGAGTAGAGA
Left flanking sequence: Indices 186895 -- 187394
ACTGCCATGTACACCTGCCAGCCCCACTGCTGGAGCACACTCTTGCTGATGGCATTGACGATCTG
CTTGGTGACTAGCACCGCAAACACCAACACGAGGATGGTGTACCCGTTGAAGTCCAACCACGAAA
GCATAGGTGGTGATCGATGCGCGGCGAAAAATATGTGAGTGGGGAAGGAAGACGAGAAGTGGGTG
GGTATAGGGGTAGTGGTTTGAGAGTGTTTTACGTTGAGGGAGTCTTTTTTTTGGTCCATTGTTGT
CGTGGTGGGTCACTGATCGCACACGAGGTGACTAAAATGGTCGACTAAAATGGTCGACTAAAATG
GTCGACTAAATGGTCGACTAATAATGGTCTTACTAAAAATGGAACAGGACACAAACGGTCAACGA
ACAGTGATTTTAAATAGAGACAATAGGAACTCTTAATAGAGACGATAGAAACTCTGAGTAGACAC
GATAGGAACGTTGAACAGAGATGATAGAAACTCTGAAAGGAGACT
Right flanking sequence: Indices 187443 -- 187942
CGGATAGAAACTCTGAGTATTAGACTCTCAGTAAACTCTGAGTAGACTCTCAGTAGATTCTGAGT
AGAAACCCTGAGTAGACTCCCTTTCACACCCTTTCACTACCTCTTTATTCTATGATACACTAATA
TACACTCACAGCGTTTCCTCGCCCGGGCTCGAGCCCTTGACATTGACCGCCAACGCGTCGAAAAT
CGCCCGCAAGTCCGGCAGCGCCTGCTTGACAAACGGCAAGTCAAAGAACCCAAAGTCGGAGTTTT
TCACAAGCTCGGTAAACACAATGGTAAGCCCCCACGGGTGCGGCTTGGCCGCGATGCGCCGCTCC
AAGAGCACCCGGGTGATGATCTCCTGGGTAAACGCACGGATCTCAGGCGACGACCAGATCAGGTG
CGACAGGAAAAAGTAGAGAATGATCCCGACAAACCAGTGGGTGTGGGCGTTGGGGTACCGCAACT
GGTTGGCGATGGCGTTGACCGCGTGGAACCGGAACTCGGAGTCGC
Found at i:187478 original size:25 final size:24
Alignment explanation
Indices: 187450--187508 Score: 77
Period size: 22 Copynumber: 2.5 Consensus size: 24
187440 GACCGGATAG
187450 AAACTCTGAGTATTAGACTCTCAGT
1 AAACTCTGAGTA-TAGACTCTCAGT
187475 AAACTCTGAG--TAGACTCTCAGT
1 AAACTCTGAGTATAGACTCTCAGT
* *
187497 AGATTCTGAGTA
1 AAACTCTGAGTA
187509 GAAACCCTGA
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
22 20 0.67
25 10 0.33
ACGTcount: A:0.32, C:0.19, G:0.19, T:0.31
Consensus pattern (24 bp):
AAACTCTGAGTATAGACTCTCAGT
Left flanking sequence: Indices 186950 -- 187449
TGACGATCTGCTTGGTGACTAGCACCGCAAACACCAACACGAGGATGGTGTACCCGTTGAAGTCC
AACCACGAAAGCATAGGTGGTGATCGATGCGCGGCGAAAAATATGTGAGTGGGGAAGGAAGACGA
GAAGTGGGTGGGTATAGGGGTAGTGGTTTGAGAGTGTTTTACGTTGAGGGAGTCTTTTTTTTGGT
CCATTGTTGTCGTGGTGGGTCACTGATCGCACACGAGGTGACTAAAATGGTCGACTAAAATGGTC
GACTAAAATGGTCGACTAAATGGTCGACTAATAATGGTCTTACTAAAAATGGAACAGGACACAAA
CGGTCAACGAACAGTGATTTTAAATAGAGACAATAGGAACTCTTAATAGAGACGATAGAAACTCT
GAGTAGACACGATAGGAACGTTGAACAGAGATGATAGAAACTCTGAAAGGAGACTCTGAGTAGAA
AGTCCGAGTAGAGACTGAGTAGAACTCTGAGTAGAGACCGGATAG
Right flanking sequence: Indices 187509 -- 188008
GAAACCCTGAGTAGACTCCCTTTCACACCCTTTCACTACCTCTTTATTCTATGATACACTAATAT
ACACTCACAGCGTTTCCTCGCCCGGGCTCGAGCCCTTGACATTGACCGCCAACGCGTCGAAAATC
GCCCGCAAGTCCGGCAGCGCCTGCTTGACAAACGGCAAGTCAAAGAACCCAAAGTCGGAGTTTTT
CACAAGCTCGGTAAACACAATGGTAAGCCCCCACGGGTGCGGCTTGGCCGCGATGCGCCGCTCCA
AGAGCACCCGGGTGATGATCTCCTGGGTAAACGCACGGATCTCAGGCGACGACCAGATCAGGTGC
GACAGGAAAAAGTAGAGAATGATCCCGACAAACCAGTGGGTGTGGGCGTTGGGGTACCGCAACTG
GTTGGCGATGGCGTTGACCGCGTGGAACCGGAACTCGGAGTCGCCGTAGTTCATCAAGTCGGCGA
GAAGCGCCACCTGCGACAGCTTGGGCGAGAACCGCCCGTGGGTCA
Found at i:187491 original size:22 final size:22
Alignment explanation
Indices: 187463--187510 Score: 78
Period size: 22 Copynumber: 2.2 Consensus size: 22
187453 CTCTGAGTAT
187463 TAGACTCTCAGTAAACTCTGAG
1 TAGACTCTCAGTAAACTCTGAG
* *
187485 TAGACTCTCAGTAGATTCTGAG
1 TAGACTCTCAGTAAACTCTGAG
187507 TAGA
1 TAGA
187511 AACCCTGAGT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.29
Consensus pattern (22 bp):
TAGACTCTCAGTAAACTCTGAG
Left flanking sequence: Indices 186963 -- 187462
GGTGACTAGCACCGCAAACACCAACACGAGGATGGTGTACCCGTTGAAGTCCAACCACGAAAGCA
TAGGTGGTGATCGATGCGCGGCGAAAAATATGTGAGTGGGGAAGGAAGACGAGAAGTGGGTGGGT
ATAGGGGTAGTGGTTTGAGAGTGTTTTACGTTGAGGGAGTCTTTTTTTTGGTCCATTGTTGTCGT
GGTGGGTCACTGATCGCACACGAGGTGACTAAAATGGTCGACTAAAATGGTCGACTAAAATGGTC
GACTAAATGGTCGACTAATAATGGTCTTACTAAAAATGGAACAGGACACAAACGGTCAACGAACA
GTGATTTTAAATAGAGACAATAGGAACTCTTAATAGAGACGATAGAAACTCTGAGTAGACACGAT
AGGAACGTTGAACAGAGATGATAGAAACTCTGAAAGGAGACTCTGAGTAGAAAGTCCGAGTAGAG
ACTGAGTAGAACTCTGAGTAGAGACCGGATAGAAACTCTGAGTAT
Right flanking sequence: Indices 187511 -- 188010
AACCCTGAGTAGACTCCCTTTCACACCCTTTCACTACCTCTTTATTCTATGATACACTAATATAC
ACTCACAGCGTTTCCTCGCCCGGGCTCGAGCCCTTGACATTGACCGCCAACGCGTCGAAAATCGC
CCGCAAGTCCGGCAGCGCCTGCTTGACAAACGGCAAGTCAAAGAACCCAAAGTCGGAGTTTTTCA
CAAGCTCGGTAAACACAATGGTAAGCCCCCACGGGTGCGGCTTGGCCGCGATGCGCCGCTCCAAG
AGCACCCGGGTGATGATCTCCTGGGTAAACGCACGGATCTCAGGCGACGACCAGATCAGGTGCGA
CAGGAAAAAGTAGAGAATGATCCCGACAAACCAGTGGGTGTGGGCGTTGGGGTACCGCAACTGGT
TGGCGATGGCGTTGACCGCGTGGAACCGGAACTCGGAGTCGCCGTAGTTCATCAAGTCGGCGAGA
AGCGCCACCTGCGACAGCTTGGGCGAGAACCGCCCGTGGGTCAGC
Found at i:187509 original size:11 final size:11
Alignment explanation
Indices: 187463--187526 Score: 65
Period size: 11 Copynumber: 5.6 Consensus size: 11
187453 CTCTGAGTAT
*
187463 TAGACTCTCAG
1 TAGACTCTGAG
*
187474 TAAACTCTGAG
1 TAGACTCTGAG
*
187485 TAGACTCTCAG
1 TAGACTCTGAG
*
187496 TAGATTCTGAG
1 TAGACTCTGAG
*
187507 TAGAAACCCTGAG
1 TAG--ACTCTGAG
187520 TAGACTC
1 TAGACTC
187527 CCTTTCACAC
Statistics
Matches: 42, Mismatches: 9, Indels: 4
0.76 0.16 0.07
Matches are distributed among these distances:
11 33 0.79
13 9 0.21
ACGTcount: A:0.31, C:0.22, G:0.20, T:0.27
Consensus pattern (11 bp):
TAGACTCTGAG
Left flanking sequence: Indices 186963 -- 187462
GGTGACTAGCACCGCAAACACCAACACGAGGATGGTGTACCCGTTGAAGTCCAACCACGAAAGCA
TAGGTGGTGATCGATGCGCGGCGAAAAATATGTGAGTGGGGAAGGAAGACGAGAAGTGGGTGGGT
ATAGGGGTAGTGGTTTGAGAGTGTTTTACGTTGAGGGAGTCTTTTTTTTGGTCCATTGTTGTCGT
GGTGGGTCACTGATCGCACACGAGGTGACTAAAATGGTCGACTAAAATGGTCGACTAAAATGGTC
GACTAAATGGTCGACTAATAATGGTCTTACTAAAAATGGAACAGGACACAAACGGTCAACGAACA
GTGATTTTAAATAGAGACAATAGGAACTCTTAATAGAGACGATAGAAACTCTGAGTAGACACGAT
AGGAACGTTGAACAGAGATGATAGAAACTCTGAAAGGAGACTCTGAGTAGAAAGTCCGAGTAGAG
ACTGAGTAGAACTCTGAGTAGAGACCGGATAGAAACTCTGAGTAT
Right flanking sequence: Indices 187527 -- 188026
CCTTTCACACCCTTTCACTACCTCTTTATTCTATGATACACTAATATACACTCACAGCGTTTCCT
CGCCCGGGCTCGAGCCCTTGACATTGACCGCCAACGCGTCGAAAATCGCCCGCAAGTCCGGCAGC
GCCTGCTTGACAAACGGCAAGTCAAAGAACCCAAAGTCGGAGTTTTTCACAAGCTCGGTAAACAC
AATGGTAAGCCCCCACGGGTGCGGCTTGGCCGCGATGCGCCGCTCCAAGAGCACCCGGGTGATGA
TCTCCTGGGTAAACGCACGGATCTCAGGCGACGACCAGATCAGGTGCGACAGGAAAAAGTAGAGA
ATGATCCCGACAAACCAGTGGGTGTGGGCGTTGGGGTACCGCAACTGGTTGGCGATGGCGTTGAC
CGCGTGGAACCGGAACTCGGAGTCGCCGTAGTTCATCAAGTCGGCGAGAAGCGCCACCTGCGACA
GCTTGGGCGAGAACCGCCCGTGGGTCAGCTTTTCCGCCACCGCAG
Found at i:193904 original size:14 final size:14
Alignment explanation
Indices: 193885--193912 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
193875 CGACCGGGAA
193885 GTGGGAAGAAGTGG
1 GTGGGAAGAAGTGG
193899 GTGGGAAGAAGTGG
1 GTGGGAAGAAGTGG
193913 ATGGTGCGGG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.29, C:0.00, G:0.57, T:0.14
Consensus pattern (14 bp):
GTGGGAAGAAGTGG
Left flanking sequence: Indices 193385 -- 193884
GCACGGGGTCGGAGCAGTAGCGGGAGCTAAAGTCGACGACGCTGACGGAGGGGTGGGCCGCAAAG
AAGGTGGCGAGAGCCGAGACGAGGGGGTCGAAAAAGACGAGGTCTTCGGCTACCAAGCGGAGCTG
GTCCTGGCAGAGGTGGTCGACGAGCGCGGCGGAGTCGCTGGGGGAAACTAGCGAGAGCTGGGGGA
GGACTTGGGCAAAGACGGTGGCGACCAAGTCAGGGGTGGCGTATTTCGCGACCAAGTGGCGAAGA
TGGGCGGTGTGGCTGTCGAGGGTGGCTTGGGTGACTGTGGTTAACACAATGGCAAGCTGGTAGAG
CACAACTTTGGTAAATTCTCTGTCGCGGCCCAAGGGGCTGGGGTCTCCGGTCGACACGATTGATG
GGGGTAGAGGCGTGGGTTCGTGGGCACGCTGGTCTACCGGATAGCTAGGGTCTAGGGTTTTTTCG
GTTGGCGAAAATATTTCTGGACGTTGGGACGGACACGACCGGGAA
Right flanking sequence: Indices 193913 -- 194412
ATGGTGCGGGAAGCAGTGGGTGGGGTCAATGGCAGCGGTGTGGGGGAGAGAAGCTAGAGGGGTGG
TTGGTTTGTGGCGTGGGAGGTGGTTGGGTGGGTGGAAGGGGGTGAGCGCAATGATGTAAGGTGGC
GTGTTGAAGGAATGGGACGTAGAGGAATGGTAGTAGGTGGTAGGAGGTGGTGTTAGGGGTAGAAG
TAGGGGTAGTGGTTGGTGGTGTTAGGGGTAGGGGTAGTGGTAGGTGGTGTTAGGGGTAATGGTAG
GGGTGGTAGAGTGGTGAATGTGGGATATTTCCAATGTACAGACTTGGATGCAAATGCGAGTAGGG
TTGAAGATGATCTAAGGAGAGGAGACGGTTGGAAGTGGTAGTGGGGAGTAGAAGTAGTTAGGTGG
ATAAGTGGTAGGTGGTATACGTGGTAGGTAGGATAGGTGGTAGGGTGGTGAAGGCGGTGGTAAAC
TTGGGCTACTTACAGGCTGTGGAGGACGCGAGTGCCAGCAGAGAG
Found at i:194131 original size:34 final size:32
Alignment explanation
Indices: 194087--194176 Score: 107
Period size: 28 Copynumber: 2.8 Consensus size: 32
194077 AGGTGGTAGG
194087 AGGTGGTGTTAGGGGTAGAAGTAGGGGTAGTGGT
1 AGGTGGTGTTAGGGGTAG--GTAGGGGTAGTGGT
*
194121 TGGTGGTGTTA--GG--GGTAGGGGTAGTGGT
1 AGGTGGTGTTAGGGGTAGGTAGGGGTAGTGGT
194149 AGGTGGTGTTAGGGGTAATGGTAGGGGT
1 AGGTGGTGTTAGGGGT-A-GGTAGGGGT
194177 GGTAGAGTGG
Statistics
Matches: 48, Mismatches: 2, Indels: 12
0.77 0.03 0.19
Matches are distributed among these distances:
28 24 0.50
30 3 0.06
32 2 0.04
34 19 0.40
ACGTcount: A:0.17, C:0.00, G:0.54, T:0.29
Consensus pattern (32 bp):
AGGTGGTGTTAGGGGTAGGTAGGGGTAGTGGT
Left flanking sequence: Indices 193587 -- 194086
GGCAAAGACGGTGGCGACCAAGTCAGGGGTGGCGTATTTCGCGACCAAGTGGCGAAGATGGGCGG
TGTGGCTGTCGAGGGTGGCTTGGGTGACTGTGGTTAACACAATGGCAAGCTGGTAGAGCACAACT
TTGGTAAATTCTCTGTCGCGGCCCAAGGGGCTGGGGTCTCCGGTCGACACGATTGATGGGGGTAG
AGGCGTGGGTTCGTGGGCACGCTGGTCTACCGGATAGCTAGGGTCTAGGGTTTTTTCGGTTGGCG
AAAATATTTCTGGACGTTGGGACGGACACGACCGGGAAGTGGGAAGAAGTGGGTGGGAAGAAGTG
GATGGTGCGGGAAGCAGTGGGTGGGGTCAATGGCAGCGGTGTGGGGGAGAGAAGCTAGAGGGGTG
GTTGGTTTGTGGCGTGGGAGGTGGTTGGGTGGGTGGAAGGGGGTGAGCGCAATGATGTAAGGTGG
CGTGTTGAAGGAATGGGACGTAGAGGAATGGTAGTAGGTGGTAGG
Right flanking sequence: Indices 194177 -- 194676
GGTAGAGTGGTGAATGTGGGATATTTCCAATGTACAGACTTGGATGCAAATGCGAGTAGGGTTGA
AGATGATCTAAGGAGAGGAGACGGTTGGAAGTGGTAGTGGGGAGTAGAAGTAGTTAGGTGGATAA
GTGGTAGGTGGTATACGTGGTAGGTAGGATAGGTGGTAGGGTGGTGAAGGCGGTGGTAAACTTGG
GCTACTTACAGGCTGTGGAGGACGCGAGTGCCAGCAGAGAGGTGATCTGGAGGGTGTCAGAGGGA
ATATGGAGAAGATGGTCCGGCAGTAGGTGGTGTAGTAGTAGGTGGTGTAGCAGTGGGGGGTAAAC
GTGATATTAGGTGGGGCTTAGGGGTTTATGATGGGTCTAGGTGTTTGGTTACGTCATGGTGGTTC
TTAGCGAAATTAATACTTGTTGTTGCTGAAATACACTAAAGATGGGGCTATAACGGAGAAAGTAA
AGCAATAGTGGGGTTTATTGCGAGCAAATCAAAAGTTTCCCAGAC
Found at i:194144 original size:28 final size:28
Alignment explanation
Indices: 194107--194165 Score: 109
Period size: 28 Copynumber: 2.1 Consensus size: 28
194097 AGGGGTAGAA
*
194107 GTAGGGGTAGTGGTTGGTGGTGTTAGGG
1 GTAGGGGTAGTGGTAGGTGGTGTTAGGG
194135 GTAGGGGTAGTGGTAGGTGGTGTTAGGG
1 GTAGGGGTAGTGGTAGGTGGTGTTAGGG
194163 GTA
1 GTA
194166 ATGGTAGGGG
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.14, C:0.00, G:0.56, T:0.31
Consensus pattern (28 bp):
GTAGGGGTAGTGGTAGGTGGTGTTAGGG
Left flanking sequence: Indices 193607 -- 194106
AGTCAGGGGTGGCGTATTTCGCGACCAAGTGGCGAAGATGGGCGGTGTGGCTGTCGAGGGTGGCT
TGGGTGACTGTGGTTAACACAATGGCAAGCTGGTAGAGCACAACTTTGGTAAATTCTCTGTCGCG
GCCCAAGGGGCTGGGGTCTCCGGTCGACACGATTGATGGGGGTAGAGGCGTGGGTTCGTGGGCAC
GCTGGTCTACCGGATAGCTAGGGTCTAGGGTTTTTTCGGTTGGCGAAAATATTTCTGGACGTTGG
GACGGACACGACCGGGAAGTGGGAAGAAGTGGGTGGGAAGAAGTGGATGGTGCGGGAAGCAGTGG
GTGGGGTCAATGGCAGCGGTGTGGGGGAGAGAAGCTAGAGGGGTGGTTGGTTTGTGGCGTGGGAG
GTGGTTGGGTGGGTGGAAGGGGGTGAGCGCAATGATGTAAGGTGGCGTGTTGAAGGAATGGGACG
TAGAGGAATGGTAGTAGGTGGTAGGAGGTGGTGTTAGGGGTAGAA
Right flanking sequence: Indices 194166 -- 194665
ATGGTAGGGGTGGTAGAGTGGTGAATGTGGGATATTTCCAATGTACAGACTTGGATGCAAATGCG
AGTAGGGTTGAAGATGATCTAAGGAGAGGAGACGGTTGGAAGTGGTAGTGGGGAGTAGAAGTAGT
TAGGTGGATAAGTGGTAGGTGGTATACGTGGTAGGTAGGATAGGTGGTAGGGTGGTGAAGGCGGT
GGTAAACTTGGGCTACTTACAGGCTGTGGAGGACGCGAGTGCCAGCAGAGAGGTGATCTGGAGGG
TGTCAGAGGGAATATGGAGAAGATGGTCCGGCAGTAGGTGGTGTAGTAGTAGGTGGTGTAGCAGT
GGGGGGTAAACGTGATATTAGGTGGGGCTTAGGGGTTTATGATGGGTCTAGGTGTTTGGTTACGT
CATGGTGGTTCTTAGCGAAATTAATACTTGTTGTTGCTGAAATACACTAAAGATGGGGCTATAAC
GGAGAAAGTAAAGCAATAGTGGGGTTTATTGCGAGCAAATCAAAA
Found at i:194192 original size:24 final size:22
Alignment explanation
Indices: 194134--194181 Score: 71
Period size: 22 Copynumber: 2.2 Consensus size: 22
194124 TGGTGTTAGG
*
194134 GGTAGGGGTAGTGGTAGGTGGT
1 GGTAGGGGTAATGGTAGGTGGT
*
194156 GTTAGGGGTAATGGTAGG-GGT
1 GGTAGGGGTAATGGTAGGTGGT
194177 GGTAG
1 GGTAG
194182 AGTGGTGAAT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
21 7 0.30
22 16 0.70
ACGTcount: A:0.17, C:0.00, G:0.56, T:0.27
Consensus pattern (22 bp):
GGTAGGGGTAATGGTAGGTGGT
Left flanking sequence: Indices 193634 -- 194133
AGTGGCGAAGATGGGCGGTGTGGCTGTCGAGGGTGGCTTGGGTGACTGTGGTTAACACAATGGCA
AGCTGGTAGAGCACAACTTTGGTAAATTCTCTGTCGCGGCCCAAGGGGCTGGGGTCTCCGGTCGA
CACGATTGATGGGGGTAGAGGCGTGGGTTCGTGGGCACGCTGGTCTACCGGATAGCTAGGGTCTA
GGGTTTTTTCGGTTGGCGAAAATATTTCTGGACGTTGGGACGGACACGACCGGGAAGTGGGAAGA
AGTGGGTGGGAAGAAGTGGATGGTGCGGGAAGCAGTGGGTGGGGTCAATGGCAGCGGTGTGGGGG
AGAGAAGCTAGAGGGGTGGTTGGTTTGTGGCGTGGGAGGTGGTTGGGTGGGTGGAAGGGGGTGAG
CGCAATGATGTAAGGTGGCGTGTTGAAGGAATGGGACGTAGAGGAATGGTAGTAGGTGGTAGGAG
GTGGTGTTAGGGGTAGAAGTAGGGGTAGTGGTTGGTGGTGTTAGG
Right flanking sequence: Indices 194182 -- 194681
AGTGGTGAATGTGGGATATTTCCAATGTACAGACTTGGATGCAAATGCGAGTAGGGTTGAAGATG
ATCTAAGGAGAGGAGACGGTTGGAAGTGGTAGTGGGGAGTAGAAGTAGTTAGGTGGATAAGTGGT
AGGTGGTATACGTGGTAGGTAGGATAGGTGGTAGGGTGGTGAAGGCGGTGGTAAACTTGGGCTAC
TTACAGGCTGTGGAGGACGCGAGTGCCAGCAGAGAGGTGATCTGGAGGGTGTCAGAGGGAATATG
GAGAAGATGGTCCGGCAGTAGGTGGTGTAGTAGTAGGTGGTGTAGCAGTGGGGGGTAAACGTGAT
ATTAGGTGGGGCTTAGGGGTTTATGATGGGTCTAGGTGTTTGGTTACGTCATGGTGGTTCTTAGC
GAAATTAATACTTGTTGTTGCTGAAATACACTAAAGATGGGGCTATAACGGAGAAAGTAAAGCAA
TAGTGGGGTTTATTGCGAGCAAATCAAAAGTTTCCCAGACTTGAT
Found at i:194326 original size:16 final size:15
Alignment explanation
Indices: 194296--194346 Score: 66
Period size: 16 Copynumber: 3.3 Consensus size: 15
194286 TAGAAGTAGT
194296 TAGGTGGATAAGTGG
1 TAGGTGGATAAGTGG
*
194311 TAGGTGGTATACGTGG
1 TAGGTGG-ATAAGTGG
*
194327 TAGGTAGGATAGGTGG
1 TAGGT-GGATAAGTGG
194343 TAGG
1 TAGG
194347 GTGGTGAAGG
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
15 7 0.22
16 23 0.72
17 2 0.06
ACGTcount: A:0.24, C:0.02, G:0.47, T:0.27
Consensus pattern (15 bp):
TAGGTGGATAAGTGG
Left flanking sequence: Indices 193796 -- 194295
GGGCACGCTGGTCTACCGGATAGCTAGGGTCTAGGGTTTTTTCGGTTGGCGAAAATATTTCTGGA
CGTTGGGACGGACACGACCGGGAAGTGGGAAGAAGTGGGTGGGAAGAAGTGGATGGTGCGGGAAG
CAGTGGGTGGGGTCAATGGCAGCGGTGTGGGGGAGAGAAGCTAGAGGGGTGGTTGGTTTGTGGCG
TGGGAGGTGGTTGGGTGGGTGGAAGGGGGTGAGCGCAATGATGTAAGGTGGCGTGTTGAAGGAAT
GGGACGTAGAGGAATGGTAGTAGGTGGTAGGAGGTGGTGTTAGGGGTAGAAGTAGGGGTAGTGGT
TGGTGGTGTTAGGGGTAGGGGTAGTGGTAGGTGGTGTTAGGGGTAATGGTAGGGGTGGTAGAGTG
GTGAATGTGGGATATTTCCAATGTACAGACTTGGATGCAAATGCGAGTAGGGTTGAAGATGATCT
AAGGAGAGGAGACGGTTGGAAGTGGTAGTGGGGAGTAGAAGTAGT
Right flanking sequence: Indices 194347 -- 194846
GTGGTGAAGGCGGTGGTAAACTTGGGCTACTTACAGGCTGTGGAGGACGCGAGTGCCAGCAGAGA
GGTGATCTGGAGGGTGTCAGAGGGAATATGGAGAAGATGGTCCGGCAGTAGGTGGTGTAGTAGTA
GGTGGTGTAGCAGTGGGGGGTAAACGTGATATTAGGTGGGGCTTAGGGGTTTATGATGGGTCTAG
GTGTTTGGTTACGTCATGGTGGTTCTTAGCGAAATTAATACTTGTTGTTGCTGAAATACACTAAA
GATGGGGCTATAACGGAGAAAGTAAAGCAATAGTGGGGTTTATTGCGAGCAAATCAAAAGTTTCC
CAGACTTGATTTCTTTGTAGAACCCTTCAATGGGCCATACGTTGGGACCATCTTTCCCTGATGTT
AGCGGCCTGCATATAAACACGGTTGCAAACCGGCTTTGAGAAGGTTGCAAATGCCCAGGGAAGAG
TTGATCCCGGGGTATTAGAGAGGATGTAGCACGGGAAACCGCCAG
Found at i:194476 original size:15 final size:15
Alignment explanation
Indices: 194458--194486 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
194448 ATGGTCCGGC
194458 AGTAGGTGGTGTAGT
1 AGTAGGTGGTGTAGT
194473 AGTAGGTGGTGTAG
1 AGTAGGTGGTGTAG
194487 CAGTGGGGGG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.21, C:0.00, G:0.48, T:0.31
Consensus pattern (15 bp):
AGTAGGTGGTGTAGT
Left flanking sequence: Indices 193958 -- 194457
GAGAGAAGCTAGAGGGGTGGTTGGTTTGTGGCGTGGGAGGTGGTTGGGTGGGTGGAAGGGGGTGA
GCGCAATGATGTAAGGTGGCGTGTTGAAGGAATGGGACGTAGAGGAATGGTAGTAGGTGGTAGGA
GGTGGTGTTAGGGGTAGAAGTAGGGGTAGTGGTTGGTGGTGTTAGGGGTAGGGGTAGTGGTAGGT
GGTGTTAGGGGTAATGGTAGGGGTGGTAGAGTGGTGAATGTGGGATATTTCCAATGTACAGACTT
GGATGCAAATGCGAGTAGGGTTGAAGATGATCTAAGGAGAGGAGACGGTTGGAAGTGGTAGTGGG
GAGTAGAAGTAGTTAGGTGGATAAGTGGTAGGTGGTATACGTGGTAGGTAGGATAGGTGGTAGGG
TGGTGAAGGCGGTGGTAAACTTGGGCTACTTACAGGCTGTGGAGGACGCGAGTGCCAGCAGAGAG
GTGATCTGGAGGGTGTCAGAGGGAATATGGAGAAGATGGTCCGGC
Right flanking sequence: Indices 194487 -- 194986
CAGTGGGGGGTAAACGTGATATTAGGTGGGGCTTAGGGGTTTATGATGGGTCTAGGTGTTTGGTT
ACGTCATGGTGGTTCTTAGCGAAATTAATACTTGTTGTTGCTGAAATACACTAAAGATGGGGCTA
TAACGGAGAAAGTAAAGCAATAGTGGGGTTTATTGCGAGCAAATCAAAAGTTTCCCAGACTTGAT
TTCTTTGTAGAACCCTTCAATGGGCCATACGTTGGGACCATCTTTCCCTGATGTTAGCGGCCTGC
ATATAAACACGGTTGCAAACCGGCTTTGAGAAGGTTGCAAATGCCCAGGGAAGAGTTGATCCCGG
GGTATTAGAGAGGATGTAGCACGGGAAACCGCCAGGTGGGGAATGTCTGCTTGTTGCACCCTCGG
GGTGTTTGCAACTGGTGAACTGTGTCCAGCCGGAACCATGGCTGACCATACACCAGGAATATTTG
ACCTTCCACCGGTTTATCAACCACGACTATTCCACCCAATTCAAT
Found at i:195385 original size:30 final size:31
Alignment explanation
Indices: 195322--195388 Score: 109
Period size: 31 Copynumber: 2.2 Consensus size: 31
195312 TTAGCGTACC
*
195322 ACCACCTAACAGGCATTACCCGTGGCAATCA
1 ACCACCTAACAGGCACTACCCGTGGCAATCA
*
195353 ACCACCTAACAGGCACTATCCGTGGC-ATCA
1 ACCACCTAACAGGCACTACCCGTGGCAATCA
195383 ACCACC
1 ACCACC
195389 GCCACTACAA
Statistics
Matches: 34, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
30 10 0.29
31 24 0.71
ACGTcount: A:0.31, C:0.39, G:0.15, T:0.15
Consensus pattern (31 bp):
ACCACCTAACAGGCACTACCCGTGGCAATCA
Left flanking sequence: Indices 194822 -- 195321
AGGATGTAGCACGGGAAACCGCCAGGTGGGGAATGTCTGCTTGTTGCACCCTCGGGGTGTTTGCA
ACTGGTGAACTGTGTCCAGCCGGAACCATGGCTGACCATACACCAGGAATATTTGACCTTCCACC
GGTTTATCAACCACGACTATTCCACCCAATTCAATCAGTAGTACCTCAACTCTAGCAAGTGATTG
TTGTACCACCTTTGCAATTGATATTTCACCACCCAATGGGTAGTGCCATCATCCAAGTGACAGTT
ACACCACCGTGTAACTACAACCATCACCTCTGATCCTCGCAATTACTTCATATACCACAAAACCA
CCACCACCAGCACTCCCACCACCCAGCAATAAGCGCTGGGAGGGTCTGGGAGGGCGCCGCCTGCG
GCCCTCCCAGCCTACACAACGCGTTTCCCTTCATCTACTACGGGTCACCGTGACCACCGTTCACC
ATCACCCTGACAGGACACCAGCACGTCACTACACCTTAGCGTACC
Right flanking sequence: Indices 195389 -- 195888
GCCACTACAAGACACCCCTTCTGAACTTTACCCTTGCTACCTGCTCTACACCCCTCCTTTCCTTG
TGCTTCACCCCTTACCTTGCTCTAATTCATTCCTATATGCATTAAAACGCCGACTCGCCGTTGTA
GGTCCACCCGCCAAACTTCTCCTGCACGCTCTGGGTCAAAAAGTCGTCCACCACCGAGTCCTGCG
GCTTCTCGTTGGTAAAGTCCTGGTCAAAGTTCAGCGTGTCCAACAAACTGTCGACGTTGGGCTTG
AACGGCGGCAAGTAGCTCTTGGAAAGCAACTTGTGCCAGTCAATGTCCTTGAAAAACGGGTGCGC
CTTGATGTCGGCGGCGTCGCTGAGCCGCATCTTGGGGTCCTTTTGCAAGAGCTTCGTCAACAAGT
CCTTGGCGTCGGTGCGCTCGAGCGCCGGCGGGAACTTGAGCGGGTCGTTGAGGATCTTGTTGTAC
ATTGTCTTGACGTTTTCGTCGTAGAACGGCGGCAACCCCGTCAAC
Found at i:199723 original size:13 final size:13
Alignment explanation
Indices: 199705--199742 Score: 51
Period size: 13 Copynumber: 2.9 Consensus size: 13
199695 TGATGAAAAC
199705 GTAGTAGGAGAAT
1 GTAGTAGGAGAAT
199718 GTAGTA-GAGGAAT
1 GTAGTAGGA-GAAT
*
199731 GTAGTAGAAGAA
1 GTAGTAGGAGAA
199743 AGTACTCTGG
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
12 2 0.09
13 19 0.86
14 1 0.05
ACGTcount: A:0.42, C:0.00, G:0.37, T:0.21
Consensus pattern (13 bp):
GTAGTAGGAGAAT
Left flanking sequence: Indices 199205 -- 199704
GCCACGTTTGACATGAAGCTCCACACCTGTGCGTCGCAGCAGGCGATCGACCTGTTGGACATGAT
GAAGTTGTGGAACGAGTACCGCGAGGAGCTCACCCACATCAGTGCGGATGGCGAGCGGCTTCCCG
GGTACGCGTCGTTTGCCCACATGCTTGGCTACTGCTCTGGGTACTACGGCTACTTGTACCTGAGC
GTGTTTGCCCTGGACATCTACTTTTCGCTTTTTGCCGACGACCCGCTGAATGTCGAGAACGGGGT
GCGGTACCGCGACACCATTTTGAGACGCGGTGGTAGCCGGGACACCATGGACAACTTGATTGAGT
TGTTGGGCCGCGAGCCCAACGCCGAGGCGTTCACGAAGGAGCTTGGTATTTAGGAAGTATGATAG
GTAGGAGTATGAGGAGGTGGAGTATTTACGAAAATGAAGAGGTGAAGGCATTAGGTGTAATGAGG
GAATAAAGTGGTGATAAAAAAGGTATTTGGTGTAATGATGAAAAC
Right flanking sequence: Indices 199743 -- 200242
AGTACTCTGGAGTATTGGAATGGTTGAAGGTGGATACGTGAGTAAATGCGGTTAAGGCCAGTTTC
CTCTCGGTCGTGCGATGCAAATATCCCAAAATCGTAGTGTCATTACCACTATTTACGAATACTCC
CAATGGGTAAATCGCGTGATGTAGCGACGAGCACGTGATGCACCACCACAGAGGCAGGCGTCACA
AAAGGGCCTGGCGATGGCGATGGCGGCCACAAAACCCACCGCATCCACAGGGTCCCCTGTGGCTC
CACAAAACGCGTGGCGACCGCGGTCAATGGCACGGCGCTAGGGGTGTGTGGCGACCCTGGCGTGG
CCCAGTGTTCGTAACCGTGTCTCAAACGGGCAGCCCGTCAATTAGACGAGACTAGCGACAGACAG
CACAGACAGCGGGAGGCAACCATAGGCGAGGCATGCAAGCGTGTCCCCACCTCTCGTTAATCTCC
CCCGTTCTTTTATTTCGTAACCCCACCATTGTTACACCACAACCC
Found at i:200893 original size:21 final size:21
Alignment explanation
Indices: 200849--200929 Score: 144
Period size: 21 Copynumber: 3.8 Consensus size: 21
200839 CCTTCAGGGT
200849 GTACTCAATCTACCTCCAGGAC
1 GTACTCAATCTACCTCC-GGAC
*
200871 GTATTCAATCTACCTCCGGAC
1 GTACTCAATCTACCTCCGGAC
200892 GTACTCAATCTACCTCCGGAC
1 GTACTCAATCTACCTCCGGAC
200913 GTACTCAATCTACCTCC
1 GTACTCAATCTACCTCC
200930 ATTACGGCCC
Statistics
Matches: 57, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
21 41 0.72
22 16 0.28
ACGTcount: A:0.25, C:0.37, G:0.12, T:0.26
Consensus pattern (21 bp):
GTACTCAATCTACCTCCGGAC
Left flanking sequence: Indices 200349 -- 200848
CCCGCGATAGCAATGTTTTCACCCACCCGCACCGTGCATACTTACTATTTCAGGCTCTATTGTGC
GTCATCTGGTCGCGCGTAAACAAAAAACCATCTATCAAGCGCGATACAGTTTAGCCCAGTGATCC
GTTGCACCCATGAACAAGCGCGTTGCCACGACGCCGCTCAAGGCCAACAACATCCGGCGCAAGCT
TGAGTTGAAGCCGCCGCCAAAAAACCCCGGGGTGGCGCTCCACTTCCACAACTGGCTTCTCACGA
AGCAGCTACACCACCAGCGCGAGCTAACCCAGTTTCTCGAGATGGAGCGCCAGTTCTCGATGATC
TAGCCGGTTCCACCGGATTGCATGTGCCCCCGGGCCCCAGGCTGTGCCTGTCTTTAGTCTTTTGC
ATATGATACCATAGTCACCATAGTTATGTATTCAGTTAAAATAAGTTACGAGATTAGTAGATTAT
GGCGACATTGGGGCCATTGGATGGTAGTACTCACTCCTTCAGGGT
Right flanking sequence: Indices 200930 -- 201429
ATTACGGCCCGAGTGCGTACTCAGTCCTCCATTCTGCGGGATTCCTTTATTATGCTACTTTCTTG
AGGTGTCGCGGCGCAACCAGTGCATCGCCAACGGGTGGATGCTCTCGGAACGCGGCACCCGGAGC
GGGGTCCCCTCCTCCACCTGGTCACCCCCAAACTCGATGTCCGCCATGTTGATATCGTCAGCCAC
CCGGCCCTTGTCGAGGTGGATGATGCGGTCGCACCAGCTCAGCGCCATGCCATCGAAAATGTGGG
TGGCGTACACCACACAGCAGTCACGGGTCTCGGCCTCCTCCTTGAGGAACTCGAGGAGGTTCCCT
CGCGCGATAATGTCCAAGTAGAGCGACGCCTCGTCCAACAAAAGGAGGGAAAAATGGGGCCGCAA
GAGCCCGATGGCAAGCAACACCCGCATGCGCTGCCCGTCGGAAATGCTCATGGTGGACCACGAGC
GGTCCACCTCGAGAATGTCCACGAGCCGCGCCGCCCGCTCGGGGT
Found at i:206249 original size:12 final size:12
Alignment explanation
Indices: 206223--206266 Score: 61
Period size: 12 Copynumber: 3.6 Consensus size: 12
206213 GTGAATGGGA
206223 GTGGTGTATATGG
1 GTGGTGTA-ATGG
*
206236 GTTGTGTAATGG
1 GTGGTGTAATGG
206248 GTGGTGTAATGG
1 GTGGTGTAATGG
*
206260 GCGGTGT
1 GTGGTGT
206267 GCTTGGTGTG
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
12 21 0.75
13 7 0.25
ACGTcount: A:0.14, C:0.02, G:0.48, T:0.36
Consensus pattern (12 bp):
GTGGTGTAATGG
Left flanking sequence: Indices 205723 -- 206222
GGGCACGAGGACTCGGTGTACCTGGTGGCGTTCACGGTGTCGGGCAAGCAGATTGCCCTGGGGTC
GCTTGACCGCACCGTCAAGTTGTGGAACTTGGAGGGCAAGGCGCTGGCCAACACCGGGTCCAAGA
AGCTGCTGTGCGAGGTGACGTACATCGGGCACAAGGATTTTGTGTTGTCGGTGTGCCTGACTCCC
AACAACGAGTACATTTTGTCGGGGTCCAAGGACCGCGGGGTGATTTTCTGGGACCAGATCCTGGG
CAACCCGTTGTTGATGTTGCAGGGCCACCGCAACTCGGTGATTTCGGTGGCGGTGTCGCTGAACT
CCAAGGGCACCGAGGGGATTTTCGCCACGGGGTCCGGCGACTGTAAGGCGCGGATCTGGAAGTGG
ACGAGAAAGGGGTAATTGTATATGTATTAATAAGAAAAGTATGTGAAGAAAGGGGGGTGTTTGAG
AGAAGTAAGGGGTGGGGTAGAGTGGAGAGTAGGGTGTGAATGGGA
Right flanking sequence: Indices 206267 -- 206766
GCTTGGTGTGCTCGAAGAAGATGCAAGTGAAGATTGGAGATTAAAGTATATCGGTAGTATGGAGG
CAATCAACTGTCTCTTCAATTATCTCGGAAAGCTTACATATAGAAAATGCCAAGATGCAATGTCA
ATTGAGTCTTCAGTATTGGCGTCCAGGTGAAATTGATCTGGTCTAGTTCGGGTAATTTCCATTGG
ACTAGTTGACAGCCGTGCGGCTGGCGAGAATAAGGTCGGTTTAGACTTGAAAACGAAGGGGTTCT
GTTAAACGGTTCTCTCGTTAGTGTGCTGTCTACAACTTTGTAAATGATTTCCTTCTGTTACTCAA
GTGAATGCAACCACTGTCGTATACCGTCGTATCGCAACGAGTGCGAAATGAAGGTCTCTAAAGTC
CAGTCTCAATGGCCCACCCCTACGTGCTTCCCACACGTTCCACGTGTTCCGTGTATTCCACGTGT
CCTATGTGTCCCATCTATTCCCACCCTTCTACTCTCAACACCACC
Found at i:219296 original size:40 final size:40
Alignment explanation
Indices: 219225--219304 Score: 108
Period size: 40 Copynumber: 2.0 Consensus size: 40
219215 CGTAGCAACA
* *
219225 CACCAGCTTCCGACTCACAAGAACTACCCCTGTCCTACCC
1 CACCACCTTCCGACTCACAAGAACCACCCCTGTCCTACCC
* *
219265 CACCACCTTACCGACTCGCAAGAACCA-CCCTGTTCTACCC
1 CACCACCTT-CCGACTCACAAGAACCACCCCTGTCCTACCC
219305 ACCTCACATC
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
40 20 0.57
41 15 0.43
ACGTcount: A:0.25, C:0.47, G:0.10, T:0.17
Consensus pattern (40 bp):
CACCACCTTCCGACTCACAAGAACCACCCCTGTCCTACCC
Left flanking sequence: Indices 218725 -- 219224
CGAACCGGACCCCCCCGCGGCTGAACAGCCGTTCTACGTCAACGCCAAACAGTACCACCGCATTC
TCAAGCGGCGCATTGCCCGGGCCAAGCTCGAGGAGAACCTCAAAATCGCCCGTACTCGAAAGCCC
TACTTGCACGAGTCTCGACACAAGCACGCGATGCGGCGGCCACGAGGACAGGGCGGACGGTTCTT
GACGGCAGCGGAGATTGCCGAGAAGGAACGCCAGGAAAAGGAGGCCGCTAAAGTTGAGCTGTAGC
CTGTATTATATATTCAATTCTTACATACTTTTGGGACTCCAGTTAGCCATGTATTATAATTTACA
ACGAGGTAGAGTTGTCAGGTGAAGCTAGCCTGGGAGATAGCTTGCCGGTAACTAGGTTAGGTTAC
CAGCACACTAGTTTAGGAGCACACTAGCTTACAAGCTCTTTTCGCTAGCATACAAGCTTGTCAAC
ATAGTGTACCAGCTCACTAGCTTTTAACGCACCAACGTAGCAACA
Right flanking sequence: Indices 219305 -- 219804
ACCTCACATCCGGTTTTGCACCATCGTCTTCGTCTCCTGCGACAACTGCTGGGCCACCGCCGGAC
GCACCCGCGCCACGTTGGCAAACACCACCCGCTCGATCAGTGCAAAGTCGTTGGCCTTGATCGAC
GCCACGGGATCAAACGGTTTGTTCTGGATGGCAACAATGGGAGAGAACGTCAGCCCAAACGCCAT
CACCTCCAAGTCCAACTCGTTCAACGGCGCGTTGGTGAACGTGGTGCCGGCAGTGGTGCCTGCGG
TCTTGGAGATGCCCTCGTACCCAGCCATGTTGGCACACACCGCCTCGGTGAGCTCGCGGGCCAGC
TCGTCCAGCACGGGCGCCAACAAGAGCTCGGACAACCCGATGTTGGCTACCTTTTTGTCTTGCAA
GTTGGCCAACGCCAGCACCGTGGGGATGACAAACACCGTGAGGATGCGTGCAAGCACCCCCTGTT
GCACGTTGTCGAAGAACTGCACCACAAACAGCGCATTGATCAGGC
Found at i:222546 original size:15 final size:15
Alignment explanation
Indices: 222526--222564 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 15
222516 GTAGTGTTCC
*
222526 GTGTTGTGTGGGCTA
1 GTGTTGTGGGGGCTA
*
222541 GTGTTGTGGGGGTTA
1 GTGTTGTGGGGGCTA
*
222556 GTGGTGTGG
1 GTGTTGTGG
222565 TAGTGTAGGG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.05, C:0.03, G:0.54, T:0.38
Consensus pattern (15 bp):
GTGTTGTGGGGGCTA
Left flanking sequence: Indices 222026 -- 222525
CGCCAACCGGGTGCTGGCCCCCAAGTTTGTCAGCAGCACCACGTGCAACAACGTGATGGCAAACC
CGGGGTCGGCTTCCATGGCACGCAATTGCAGTTCTGCGTCGCGCGCATGCTGTGGCAGGAGCAGT
TGCTCGAGGCACTGGGCAATCGACTCCAAGCTCATGGCGACGTCGTCTGGCGGCCCGCGCTTTTG
AGATGGAGGGTGTGTGCAGGATTGCTGGGGAAGTGGGATAGGTGGGAGAGGGAGAGAAGTGGGTG
AGTGTGGGAGAGAATTGGTGGAGGGGATAGAAGATGGTGTTGTGGCTAGGGGTGGTGTTACTGGG
TGGGATCTGTGGGATCTGTGGTTGGTGGTGGTAGGTGGGTGTTGATTTGGTGGCTGGTGGTGGCA
CAGTGCGGATCGAACCCAGTGGAAGGTGATCCAGGGCGGGTGGGCCGGAGGGGTTGCGAAGGTGG
AGTCTATGTTTAGAGCTGTTGTTTCTATCTGATCCGTAGTGTTCC
Right flanking sequence: Indices 222565 -- 223064
TAGTGTAGGGACCTGGTAGGAAGTGACGAGATTAGTAGAAAGGTGGGTGATTCGGGCTGGAGAGC
TATGGTTTGCTTGTGTTGTGTCTATGTTTTCTGTGTGCTCGTGTTGTGTCTATGTTCTCTGTGTG
GATAGTTTACTTGTTCTGTAATCATCCATATTGGTGGTTGGTAGTGGTGTGGTGTGAAACTCATG
GGAAGTTGCTCAATGATCCGAGCCGAGCAATTGTATTCGCAATTGATCTCGCTACCGTCTGTGTT
TGAAGATTGTGGTTAATCTGATCTTTGAGTTTGTCTATGTATTGTTTAACCACTCGTCTCTGGCT
GGCTTGGTGGTGGTGATGGTGAGATAGTGAAATCGGGCCAGGATGTTGTCAACGGGCTTGGCAAA
ACGTGGACCCATTCTCACCTATTGCCATCGATGATCTGACGATACCCAATTGGTGTCTTGAATCG
TAGCCTTAATCACAGCTAGAGGTGACGTGGGGTGACATGGGGTGA
Found at i:222677 original size:28 final size:28
Alignment explanation
Indices: 222637--222694 Score: 98
Period size: 28 Copynumber: 2.1 Consensus size: 28
222627 AGCTATGGTT
* *
222637 TGCTTGTGTTGTGTCTATGTTTTCTGTG
1 TGCTCGTGTTGTGTCTATGTTCTCTGTG
222665 TGCTCGTGTTGTGTCTATGTTCTCTGTG
1 TGCTCGTGTTGTGTCTATGTTCTCTGTG
222693 TG
1 TG
222695 GATAGTTTAC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.03, C:0.14, G:0.29, T:0.53
Consensus pattern (28 bp):
TGCTCGTGTTGTGTCTATGTTCTCTGTG
Left flanking sequence: Indices 222137 -- 222636
ATGCTGTGGCAGGAGCAGTTGCTCGAGGCACTGGGCAATCGACTCCAAGCTCATGGCGACGTCGT
CTGGCGGCCCGCGCTTTTGAGATGGAGGGTGTGTGCAGGATTGCTGGGGAAGTGGGATAGGTGGG
AGAGGGAGAGAAGTGGGTGAGTGTGGGAGAGAATTGGTGGAGGGGATAGAAGATGGTGTTGTGGC
TAGGGGTGGTGTTACTGGGTGGGATCTGTGGGATCTGTGGTTGGTGGTGGTAGGTGGGTGTTGAT
TTGGTGGCTGGTGGTGGCACAGTGCGGATCGAACCCAGTGGAAGGTGATCCAGGGCGGGTGGGCC
GGAGGGGTTGCGAAGGTGGAGTCTATGTTTAGAGCTGTTGTTTCTATCTGATCCGTAGTGTTCCG
TGTTGTGTGGGCTAGTGTTGTGGGGGTTAGTGGTGTGGTAGTGTAGGGACCTGGTAGGAAGTGAC
GAGATTAGTAGAAAGGTGGGTGATTCGGGCTGGAGAGCTATGGTT
Right flanking sequence: Indices 222695 -- 223194
GATAGTTTACTTGTTCTGTAATCATCCATATTGGTGGTTGGTAGTGGTGTGGTGTGAAACTCATG
GGAAGTTGCTCAATGATCCGAGCCGAGCAATTGTATTCGCAATTGATCTCGCTACCGTCTGTGTT
TGAAGATTGTGGTTAATCTGATCTTTGAGTTTGTCTATGTATTGTTTAACCACTCGTCTCTGGCT
GGCTTGGTGGTGGTGATGGTGAGATAGTGAAATCGGGCCAGGATGTTGTCAACGGGCTTGGCAAA
ACGTGGACCCATTCTCACCTATTGCCATCGATGATCTGACGATACCCAATTGGTGTCTTGAATCG
TAGCCTTAATCACAGCTAGAGGTGACGTGGGGTGACATGGGGTGATACGTACTTAACCAGAGAGT
AAAGACTAAACAGTCGCCTAATCACTCTCATCACAGTCTCTCGTTATACCCTCACAGCTCTCTCT
CCTCGTTGCCCCCCTTCCCTCCCACATCTACCATCACCTGCCGAA
Found at i:225129 original size:16 final size:16
Alignment explanation
Indices: 225110--225149 Score: 62
Period size: 16 Copynumber: 2.5 Consensus size: 16
225100 TTATTTTCAC
225110 CACTGCTTGTCTCCAA
1 CACTGCTTGTCTCCAA
*
225126 CACTGCTTGTTTCCAA
1 CACTGCTTGTCTCCAA
*
225142 CACAGCTT
1 CACTGCTT
225150 ATTTCCACCA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.20, C:0.35, G:0.12, T:0.33
Consensus pattern (16 bp):
CACTGCTTGTCTCCAA
Left flanking sequence: Indices 224610 -- 225109
TACAGTTGATAAAGCTTGAGAAGGTAGAAGAGAGAGGATGGGAGAGGTGGTGAGAGGTGGTAATG
GGAAGAGCTCTTGTGGGTGGGGATGTCAGGGATAGTTTGGGTGGGTGACGAGGGGGGGGGGGGGG
GGGGGGGGGGNGTTCTGTGGGCTGGTTGGACCGGTGAGACCGCTGGTGAAAGATTATGGTTGGAT
TTGTCTCAATGTGGAAGTTGTACAGTTACTAGAGTTCAACGGGAACTCTGAGCAGTCCAAGTGTA
GTTACTCATCGGACTATGCCAATTGCTGCTTTTACGTATGTTTACACCATTGAGTGACTGGGCTG
CGAACTGAGCGAGATAGCTACTGGTGCCACCCAACGATAGAGCTACTGGTTCCACGATATAGCCG
TTGGTACCACCAATTGGGATAGAACCACGCCCACTAGAGACAACCACCGCCACCATTAATCACCT
CCCGTACCCAAAACACCGCTCGTTTCCAACAATGCTTATTTTCAC
Right flanking sequence: Indices 225150 -- 225649
ATTTCCACCACTACCTATCTCCACCAATGCTCATCTCCACTTCTCTACACCCCACCACTCCACCA
CTCCACCACTACCTGTCTCCACCTCCTCATTACTCTATCCATTAATTCGTGTATATACATCATGC
TAACATGCTACACCATTACACCATTACACCATCACAACCCCACCACACTGCTGGCACTACCAGTA
CTTCCAGTGCGGCGAGTTGCCCAACCGCTGCTGGATGTCCTCCCTCGTGGCAAGCCCCGTGAACG
CGTCCGCAGTGAAAACAGCCCCGCCAGCCACGGCCTCCGGGGTCGCAGCCAAGTAGCCCACACCA
CGCCCGCCCAACTTGGTCTCAAACGACTCGTAGCCCTCGGCCGCAAACCGCTCCCGCGCCGCAGC
CACCGCCGCGGCGTCGGCGTCGTCGGTGATGAGGGTGATGGCACACCCGCCGCCGCCAGCGCCCG
TGAGCTTGGTCAGCCCGATCGCGTGCACGTCGCCAATACTCTTGA
Found at i:225154 original size:16 final size:16
Alignment explanation
Indices: 225087--225156 Score: 61
Period size: 16 Copynumber: 4.4 Consensus size: 16
225077 ACACCGCTCG
225087 TTTCCAACA-ATGCTTA
1 TTTCCAACACA-GCTTA
* * * *
225103 TTTTCACCACTGCTTG
1 TTTCCAACACAGCTTA
* * *
225119 TCTCCAACACTGCTTG
1 TTTCCAACACAGCTTA
225135 TTTCCAACACAGCTTA
1 TTTCCAACACAGCTTA
225151 TTTCCA
1 TTTCCA
225157 CCACTACCTA
Statistics
Matches: 43, Mismatches: 10, Indels: 2
0.78 0.18 0.04
Matches are distributed among these distances:
16 43 1.00
ACGTcount: A:0.23, C:0.31, G:0.09, T:0.37
Consensus pattern (16 bp):
TTTCCAACACAGCTTA
Left flanking sequence: Indices 224587 -- 225086
GTTAGTGTATATAGAATAGACTATACAGTTGATAAAGCTTGAGAAGGTAGAAGAGAGAGGATGGG
AGAGGTGGTGAGAGGTGGTAATGGGAAGAGCTCTTGTGGGTGGGGATGTCAGGGATAGTTTGGGT
GGGTGACGAGGGGGGGGGGGGGGGGGGGGGGGGNGTTCTGTGGGCTGGTTGGACCGGTGAGACCG
CTGGTGAAAGATTATGGTTGGATTTGTCTCAATGTGGAAGTTGTACAGTTACTAGAGTTCAACGG
GAACTCTGAGCAGTCCAAGTGTAGTTACTCATCGGACTATGCCAATTGCTGCTTTTACGTATGTT
TACACCATTGAGTGACTGGGCTGCGAACTGAGCGAGATAGCTACTGGTGCCACCCAACGATAGAG
CTACTGGTTCCACGATATAGCCGTTGGTACCACCAATTGGGATAGAACCACGCCCACTAGAGACA
ACCACCGCCACCATTAATCACCTCCCGTACCCAAAACACCGCTCG
Right flanking sequence: Indices 225157 -- 225656
CCACTACCTATCTCCACCAATGCTCATCTCCACTTCTCTACACCCCACCACTCCACCACTCCACC
ACTACCTGTCTCCACCTCCTCATTACTCTATCCATTAATTCGTGTATATACATCATGCTAACATG
CTACACCATTACACCATTACACCATCACAACCCCACCACACTGCTGGCACTACCAGTACTTCCAG
TGCGGCGAGTTGCCCAACCGCTGCTGGATGTCCTCCCTCGTGGCAAGCCCCGTGAACGCGTCCGC
AGTGAAAACAGCCCCGCCAGCCACGGCCTCCGGGGTCGCAGCCAAGTAGCCCACACCACGCCCGC
CCAACTTGGTCTCAAACGACTCGTAGCCCTCGGCCGCAAACCGCTCCCGCGCCGCAGCCACCGCC
GCGGCGTCGGCGTCGTCGGTGATGAGGGTGATGGCACACCCGCCGCCGCCAGCGCCCGTGAGCTT
GGTCAGCCCGATCGCGTGCACGTCGCCAATACTCTTGACGGTCTC
Found at i:225171 original size:48 final size:48
Alignment explanation
Indices: 225076--225172 Score: 124
Period size: 48 Copynumber: 2.0 Consensus size: 48
225066 CCGTACCCAA
* * * *
225076 AACACCGCTCGTTTCCAACAATGCTTATTTTCACCACTGCTTGTCTCC
1 AACACCGCTCGTTTCCAACAATGCTTATTTCCACCACTACCTATCTCC
* *
225124 AACACTGCTTGTTTCCAACACA-GCTTATTTCCACCACTACCTATCTCC
1 AACACCGCTCGTTTCCAACA-ATGCTTATTTCCACCACTACCTATCTCC
225172 A
1 A
225173 CCAATGCTCA
Statistics
Matches: 42, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
48 41 0.98
49 1 0.02
ACGTcount: A:0.24, C:0.36, G:0.08, T:0.32
Consensus pattern (48 bp):
AACACCGCTCGTTTCCAACAATGCTTATTTCCACCACTACCTATCTCC
Left flanking sequence: Indices 224576 -- 225075
GCATCTACCGGGTTAGTGTATATAGAATAGACTATACAGTTGATAAAGCTTGAGAAGGTAGAAGA
GAGAGGATGGGAGAGGTGGTGAGAGGTGGTAATGGGAAGAGCTCTTGTGGGTGGGGATGTCAGGG
ATAGTTTGGGTGGGTGACGAGGGGGGGGGGGGGGGGGGGGGGGGNGTTCTGTGGGCTGGTTGGAC
CGGTGAGACCGCTGGTGAAAGATTATGGTTGGATTTGTCTCAATGTGGAAGTTGTACAGTTACTA
GAGTTCAACGGGAACTCTGAGCAGTCCAAGTGTAGTTACTCATCGGACTATGCCAATTGCTGCTT
TTACGTATGTTTACACCATTGAGTGACTGGGCTGCGAACTGAGCGAGATAGCTACTGGTGCCACC
CAACGATAGAGCTACTGGTTCCACGATATAGCCGTTGGTACCACCAATTGGGATAGAACCACGCC
CACTAGAGACAACCACCGCCACCATTAATCACCTCCCGTACCCAA
Right flanking sequence: Indices 225173 -- 225672
CCAATGCTCATCTCCACTTCTCTACACCCCACCACTCCACCACTCCACCACTACCTGTCTCCACC
TCCTCATTACTCTATCCATTAATTCGTGTATATACATCATGCTAACATGCTACACCATTACACCA
TTACACCATCACAACCCCACCACACTGCTGGCACTACCAGTACTTCCAGTGCGGCGAGTTGCCCA
ACCGCTGCTGGATGTCCTCCCTCGTGGCAAGCCCCGTGAACGCGTCCGCAGTGAAAACAGCCCCG
CCAGCCACGGCCTCCGGGGTCGCAGCCAAGTAGCCCACACCACGCCCGCCCAACTTGGTCTCAAA
CGACTCGTAGCCCTCGGCCGCAAACCGCTCCCGCGCCGCAGCCACCGCCGCGGCGTCGGCGTCGT
CGGTGATGAGGGTGATGGCACACCCGCCGCCGCCAGCGCCCGTGAGCTTGGTCAGCCCGATCGCG
TGCACGTCGCCAATACTCTTGACGGTCTCGAGCGCGGGATGCGAT
Found at i:226771 original size:24 final size:23
Alignment explanation
Indices: 226744--226795 Score: 59
Period size: 24 Copynumber: 2.2 Consensus size: 23
226734 GGTGTGGTAC
*
226744 GTGGGGTGGTCAATGTGTTGGTT
1 GTGGGGTGGTCAATGAGTTGGTT
* * *
226767 GGTGGGTTGGTTAGTGAGTTGGTT
1 -GTGGGGTGGTCAATGAGTTGGTT
226791 GTGGG
1 GTGGG
226796 TTGGCTGGTG
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
23 5 0.21
24 19 0.79
ACGTcount: A:0.08, C:0.02, G:0.52, T:0.38
Consensus pattern (23 bp):
GTGGGGTGGTCAATGAGTTGGTT
Left flanking sequence: Indices 226244 -- 226743
TGCACAACTGGAGATACATGTAGAGAAAGCACTGGCAGGCGATGAAGTGGATGTTTTCCTCGGTA
GCGATCGAGGGACGGATGGCGGCCTGGATGGCGGGGTCGAGCACAGCGGTGGGGCTGGGCCGCCC
GTCGGCGTCACGGACCACGTGTTGCGCCACCGCTTCCCAGGGAAGCTCGCTCTGGCGCCACTGGT
GAACGAGGTTGATGTCGGAAAACTCGAGTCGGACGACTCCGGGGTCGGGCGACGGGGTGGCGAGG
AGGTAGCAGCGCACGTCGAGCGCGGCGGCGATGGCCGGCTTGTAGTACACCGCCAGGTGCTCCCC
AAAGATGATCACTTTGCCTGGGGCGCTCACGGCAAACGGCTCCATGGTCGCGTCAGTACGGATTT
TTGGCTGCCGCGTCGTAAATAAACGATGGGAACGAGAAGAGGGGGAAAAGAGAGAGAATAGGGGA
AGGGGAGTAGGAGAGGTGGTGGGTTGTAGCTAGACGGTGTGGTAC
Right flanking sequence: Indices 226796 -- 227295
TTGGCTGGTGGGTTGGCTGGTGGGTTGTGTAGATGGGCTTTTGGGTGAGTTTAGTGGTTGATGGG
AGTGGGTGGACGGTTTTACTGGTAGTGGAAGGTGGATACTGTAATGTTGGGGTGGAAGGGGTTAC
ACGCAGACTCCTGGGGCGTACTTTGTGTAATGTAAGGAGTTCTGGCGTCGGTGGCTGCGGTTGGC
TGGTATAAGCGAGGGTGGTGACTAGAGGTAGTGAAAAATTACTGGATCTGGTGGAAAAACGCGGA
GAGAGGCGAAAGCGTGCTGCAAATGGAATCTGCGTAGGGGTTACTGGTAACGGGCAGGTGTGAAT
GGTTCATCTCGACGCGTTTATTGTGGATTGTGGTCCCTCCAGGTTGGCAATATCATGCGGAGAAG
TCAAATTCACCACGAAGGCCCCAAGCCCGGTCCAGGATGCCTTTCCCAGACTAGCGTAGCTTGTT
TGATTTATTTGGCCTAGGTTTCAAGCTCATTGTGGGCATCCGTCG
Found at i:226775 original size:12 final size:12
Alignment explanation
Indices: 226760--226822 Score: 83
Period size: 12 Copynumber: 5.3 Consensus size: 12
226750 TGGTCAATGT
226760 GTTGGTTGGTGG
1 GTTGGTTGGTGG
* *
226772 GTTGGTTAGTGA
1 GTTGGTTGGTGG
226784 GTTGGTT-GTGG
1 GTTGGTTGGTGG
*
226795 GTTGGCTGGTGG
1 GTTGGTTGGTGG
*
226807 GTTGGCTGGTGG
1 GTTGGTTGGTGG
226819 GTTG
1 GTTG
226823 TGTAGATGGG
Statistics
Matches: 46, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
11 9 0.20
12 37 0.80
ACGTcount: A:0.03, C:0.03, G:0.54, T:0.40
Consensus pattern (12 bp):
GTTGGTTGGTGG
Left flanking sequence: Indices 226260 -- 226759
CATGTAGAGAAAGCACTGGCAGGCGATGAAGTGGATGTTTTCCTCGGTAGCGATCGAGGGACGGA
TGGCGGCCTGGATGGCGGGGTCGAGCACAGCGGTGGGGCTGGGCCGCCCGTCGGCGTCACGGACC
ACGTGTTGCGCCACCGCTTCCCAGGGAAGCTCGCTCTGGCGCCACTGGTGAACGAGGTTGATGTC
GGAAAACTCGAGTCGGACGACTCCGGGGTCGGGCGACGGGGTGGCGAGGAGGTAGCAGCGCACGT
CGAGCGCGGCGGCGATGGCCGGCTTGTAGTACACCGCCAGGTGCTCCCCAAAGATGATCACTTTG
CCTGGGGCGCTCACGGCAAACGGCTCCATGGTCGCGTCAGTACGGATTTTTGGCTGCCGCGTCGT
AAATAAACGATGGGAACGAGAAGAGGGGGAAAAGAGAGAGAATAGGGGAAGGGGAGTAGGAGAGG
TGGTGGGTTGTAGCTAGACGGTGTGGTACGTGGGGTGGTCAATGT
Right flanking sequence: Indices 226823 -- 227322
TGTAGATGGGCTTTTGGGTGAGTTTAGTGGTTGATGGGAGTGGGTGGACGGTTTTACTGGTAGTG
GAAGGTGGATACTGTAATGTTGGGGTGGAAGGGGTTACACGCAGACTCCTGGGGCGTACTTTGTG
TAATGTAAGGAGTTCTGGCGTCGGTGGCTGCGGTTGGCTGGTATAAGCGAGGGTGGTGACTAGAG
GTAGTGAAAAATTACTGGATCTGGTGGAAAAACGCGGAGAGAGGCGAAAGCGTGCTGCAAATGGA
ATCTGCGTAGGGGTTACTGGTAACGGGCAGGTGTGAATGGTTCATCTCGACGCGTTTATTGTGGA
TTGTGGTCCCTCCAGGTTGGCAATATCATGCGGAGAAGTCAAATTCACCACGAAGGCCCCAAGCC
CGGTCCAGGATGCCTTTCCCAGACTAGCGTAGCTTGTTTGATTTATTTGGCCTAGGTTTCAAGCT
CATTGTGGGCATCCGTCGTGTGTCTTGGATCCTTTACCTGGCTAA
Found at i:228848 original size:6 final size:6
Alignment explanation
Indices: 228837--228968 Score: 147
Period size: 6 Copynumber: 20.0 Consensus size: 6
228827 CGACCAGCAA
228837 CAACAC CAACAC CAACACAC CAACAC CAACAC CAACAC CAACACAC CAACAC
1 CAACAC CAACAC C-A-ACAC CAACAC CAACAC CAACAC C-A-ACAC CAACAC
*
228889 CAACCCAC CAACAC CAACAC CGACAC CAACAC ATCAACAC CAACACAC
1 CAA--CAC CAACAC CAACAC CAACAC CAACAC --CAACAC C-A-ACAC
228937 CAACAC CAACAC CAACACAC CAACAC CAACAC
1 CAACAC CAACAC C-A-ACAC CAACAC CAACAC
228969 ACCAATAAGA
Statistics
Matches: 112, Mismatches: 2, Indels: 24
0.81 0.01 0.17
Matches are distributed among these distances:
6 72 0.64
7 8 0.07
8 32 0.29
ACGTcount: A:0.48, C:0.50, G:0.01, T:0.01
Consensus pattern (6 bp):
CAACAC
Left flanking sequence: Indices 228337 -- 228836
CCCTCTAACAAATTTCAAAGCGCCTGCAAATAAAACGGCCCCCTCTAACAAACAACCACCCCACA
ATACGACGAGCTATATGACGACCATTCAAAATTTGCTAAAGACTTTACGAGCATTACATAACTCC
TTATGTTAGTCGCTTTACGAAATATATAGCCTAATGCGGCTCATACGTCGTGTGACACAGATCAC
GTGACTTTACTGTTGATACCGTAGTTAGCGTTGATTATGGCGAATCTGTATATATCCTATATACT
ACAATATAAGCCCCCAGTACGGCTTCAGGGTAGCCCGCTCATGCAGGCTACCCCGAAGGCGCACC
CAGTGCTTAACTATACAATTATAGAAACCCGGATTGGATACCAATGGCACCACCAACAGGGGGAA
AAAACGGTGCCAATGGCACCCGATCCAACGAATCGAATCGGATACCATTGGCACCACCAACAGGG
GGAAAAGGAGCCATTGGCATCCAACCCTTAAACAACGACCAGCAA
Right flanking sequence: Indices 228969 -- 229468
ACCAATAAGAGGGGGTGGTACCGCTAGTACTTCTGATATCGTCTCCCATATGGCAAAGGAAGCGA
AGCCCAGAGGCTTGCAACTCCCCGCGCCGACCACGGGATGGTTCTGTGGCGATACCGCCCATCCT
GACGCTAGATTGCACCTCCCACCTCCCGGCCCGTCGGCCATCGGGTAGAAGCGTGCAACTGCACA
TGTCAGGACTGTTCGAGGACCCGTACCTGGTGGGTCGCGACGCCACCAGTAACAAGCCCTGTCAC
CAGACCAACAGACGCTGAGCCACCACCATGGCGCGAAGCGCCAACGGACAATGACACAGCCGGGA
GACTCCATCAGAAGTATCAACAGCACCGAGGCTGTGGTGAGCAAGTATCACCACGCTAACGACAA
GCTTTTGTAGCCTCCTTGGGGGGATTTTTTTCCCCCATCTTCTTTGATTTTCTCTTTGCTTGTCG
CTGCCTTCCGTAGTAACGGGAAAGGAGCCGGGCTTGCAGGGTGCA
Found at i:228858 original size:26 final size:26
Alignment explanation
Indices: 228837--228968 Score: 180
Period size: 26 Copynumber: 5.0 Consensus size: 26
228827 CGACCAGCAA
228837 CAACACCAACACCAACACACCAACAC
1 CAACACCAACACCAACACACCAACAC
228863 CAACACCAACACCAACACACCAACAC
1 CAACACCAACACCAACACACCAACAC
*
228889 CAACCCACCAACACC-A-ACACCGACAC
1 CAA--CACCAACACCAACACACCAACAC
228915 CAACACATCAACACCAACACACCAACAC
1 CAACAC--CAACACCAACACACCAACAC
*
228943 CAACACCAACA-CACCAACACCAACAC
1 CAACACCAACACCAAC-ACACCAACAC
228969 ACCAATAAGA
Statistics
Matches: 96, Mismatches: 3, Indels: 14
0.85 0.03 0.12
Matches are distributed among these distances:
24 3 0.03
25 3 0.03
26 63 0.66
27 2 0.02
28 25 0.26
ACGTcount: A:0.48, C:0.50, G:0.01, T:0.01
Consensus pattern (26 bp):
CAACACCAACACCAACACACCAACAC
Left flanking sequence: Indices 228337 -- 228836
CCCTCTAACAAATTTCAAAGCGCCTGCAAATAAAACGGCCCCCTCTAACAAACAACCACCCCACA
ATACGACGAGCTATATGACGACCATTCAAAATTTGCTAAAGACTTTACGAGCATTACATAACTCC
TTATGTTAGTCGCTTTACGAAATATATAGCCTAATGCGGCTCATACGTCGTGTGACACAGATCAC
GTGACTTTACTGTTGATACCGTAGTTAGCGTTGATTATGGCGAATCTGTATATATCCTATATACT
ACAATATAAGCCCCCAGTACGGCTTCAGGGTAGCCCGCTCATGCAGGCTACCCCGAAGGCGCACC
CAGTGCTTAACTATACAATTATAGAAACCCGGATTGGATACCAATGGCACCACCAACAGGGGGAA
AAAACGGTGCCAATGGCACCCGATCCAACGAATCGAATCGGATACCATTGGCACCACCAACAGGG
GGAAAAGGAGCCATTGGCATCCAACCCTTAAACAACGACCAGCAA
Right flanking sequence: Indices 228969 -- 229468
ACCAATAAGAGGGGGTGGTACCGCTAGTACTTCTGATATCGTCTCCCATATGGCAAAGGAAGCGA
AGCCCAGAGGCTTGCAACTCCCCGCGCCGACCACGGGATGGTTCTGTGGCGATACCGCCCATCCT
GACGCTAGATTGCACCTCCCACCTCCCGGCCCGTCGGCCATCGGGTAGAAGCGTGCAACTGCACA
TGTCAGGACTGTTCGAGGACCCGTACCTGGTGGGTCGCGACGCCACCAGTAACAAGCCCTGTCAC
CAGACCAACAGACGCTGAGCCACCACCATGGCGCGAAGCGCCAACGGACAATGACACAGCCGGGA
GACTCCATCAGAAGTATCAACAGCACCGAGGCTGTGGTGAGCAAGTATCACCACGCTAACGACAA
GCTTTTGTAGCCTCCTTGGGGGGATTTTTTTCCCCCATCTTCTTTGATTTTCTCTTTGCTTGTCG
CTGCCTTCCGTAGTAACGGGAAAGGAGCCGGGCTTGCAGGGTGCA
Found at i:228862 original size:20 final size:20
Alignment explanation
Indices: 228837--228968 Score: 189
Period size: 20 Copynumber: 6.6 Consensus size: 20
228827 CGACCAGCAA
228837 CAACACCAACACCAACACAC
1 CAACACCAACACCAACACAC
228857 CAACACCAACACCAACAC-C
1 CAACACCAACACCAACACAC
* *
228876 AACACACCAACACCAACCCAC
1 CA-ACACCAACACCAACACAC
*
228897 CAACACCAACACC--GACAC
1 CAACACCAACACCAACACAC
228915 CAACACATCAACACCAACACAC
1 CAACAC--CAACACCAACACAC
228937 CAACACCAACACCAACACAC
1 CAACACCAACACCAACACAC
228957 CAACACCAACAC
1 CAACACCAACAC
228969 ACCAATAAGA
Statistics
Matches: 100, Mismatches: 6, Indels: 12
0.85 0.05 0.10
Matches are distributed among these distances:
18 9 0.09
19 2 0.02
20 77 0.77
21 2 0.02
22 10 0.10
ACGTcount: A:0.48, C:0.50, G:0.01, T:0.01
Consensus pattern (20 bp):
CAACACCAACACCAACACAC
Left flanking sequence: Indices 228337 -- 228836
CCCTCTAACAAATTTCAAAGCGCCTGCAAATAAAACGGCCCCCTCTAACAAACAACCACCCCACA
ATACGACGAGCTATATGACGACCATTCAAAATTTGCTAAAGACTTTACGAGCATTACATAACTCC
TTATGTTAGTCGCTTTACGAAATATATAGCCTAATGCGGCTCATACGTCGTGTGACACAGATCAC
GTGACTTTACTGTTGATACCGTAGTTAGCGTTGATTATGGCGAATCTGTATATATCCTATATACT
ACAATATAAGCCCCCAGTACGGCTTCAGGGTAGCCCGCTCATGCAGGCTACCCCGAAGGCGCACC
CAGTGCTTAACTATACAATTATAGAAACCCGGATTGGATACCAATGGCACCACCAACAGGGGGAA
AAAACGGTGCCAATGGCACCCGATCCAACGAATCGAATCGGATACCATTGGCACCACCAACAGGG
GGAAAAGGAGCCATTGGCATCCAACCCTTAAACAACGACCAGCAA
Right flanking sequence: Indices 228969 -- 229468
ACCAATAAGAGGGGGTGGTACCGCTAGTACTTCTGATATCGTCTCCCATATGGCAAAGGAAGCGA
AGCCCAGAGGCTTGCAACTCCCCGCGCCGACCACGGGATGGTTCTGTGGCGATACCGCCCATCCT
GACGCTAGATTGCACCTCCCACCTCCCGGCCCGTCGGCCATCGGGTAGAAGCGTGCAACTGCACA
TGTCAGGACTGTTCGAGGACCCGTACCTGGTGGGTCGCGACGCCACCAGTAACAAGCCCTGTCAC
CAGACCAACAGACGCTGAGCCACCACCATGGCGCGAAGCGCCAACGGACAATGACACAGCCGGGA
GACTCCATCAGAAGTATCAACAGCACCGAGGCTGTGGTGAGCAAGTATCACCACGCTAACGACAA
GCTTTTGTAGCCTCCTTGGGGGGATTTTTTTCCCCCATCTTCTTTGATTTTCTCTTTGCTTGTCG
CTGCCTTCCGTAGTAACGGGAAAGGAGCCGGGCTTGCAGGGTGCA
Found at i:228973 original size:14 final size:14
Alignment explanation
Indices: 228834--228962 Score: 169
Period size: 14 Copynumber: 9.4 Consensus size: 14
228824 CAACGACCAG
228834 CAACAACACCAACAC
1 CAAC-ACACCAACAC
228849 CAACACACCAACAC
1 CAACACACCAACAC
228863 C-A-ACACCAACAC
1 CAACACACCAACAC
228875 CAACACACCAACAC
1 CAACACACCAACAC
*
228889 CAACCCACCAACAC
1 CAACACACCAACAC
*
228903 C-A-ACACCGACAC
1 CAACACACCAACAC
*
228915 CAACACATCAACAC
1 CAACACACCAACAC
228929 CAACACACCAACAC
1 CAACACACCAACAC
*
228943 CAACAC-CAACACAC
1 CAACACACCA-ACAC
228957 CAACAC
1 CAACAC
228963 CAACACACCA
Statistics
Matches: 102, Mismatches: 7, Indels: 11
0.85 0.06 0.09
Matches are distributed among these distances:
12 20 0.20
13 6 0.06
14 72 0.71
15 4 0.04
ACGTcount: A:0.49, C:0.50, G:0.01, T:0.01
Consensus pattern (14 bp):
CAACACACCAACAC
Left flanking sequence: Indices 228334 -- 228833
GCCCCCTCTAACAAATTTCAAAGCGCCTGCAAATAAAACGGCCCCCTCTAACAAACAACCACCCC
ACAATACGACGAGCTATATGACGACCATTCAAAATTTGCTAAAGACTTTACGAGCATTACATAAC
TCCTTATGTTAGTCGCTTTACGAAATATATAGCCTAATGCGGCTCATACGTCGTGTGACACAGAT
CACGTGACTTTACTGTTGATACCGTAGTTAGCGTTGATTATGGCGAATCTGTATATATCCTATAT
ACTACAATATAAGCCCCCAGTACGGCTTCAGGGTAGCCCGCTCATGCAGGCTACCCCGAAGGCGC
ACCCAGTGCTTAACTATACAATTATAGAAACCCGGATTGGATACCAATGGCACCACCAACAGGGG
GAAAAAACGGTGCCAATGGCACCCGATCCAACGAATCGAATCGGATACCATTGGCACCACCAACA
GGGGGAAAAGGAGCCATTGGCATCCAACCCTTAAACAACGACCAG
Right flanking sequence: Indices 228963 -- 229462
CAACACACCAATAAGAGGGGGTGGTACCGCTAGTACTTCTGATATCGTCTCCCATATGGCAAAGG
AAGCGAAGCCCAGAGGCTTGCAACTCCCCGCGCCGACCACGGGATGGTTCTGTGGCGATACCGCC
CATCCTGACGCTAGATTGCACCTCCCACCTCCCGGCCCGTCGGCCATCGGGTAGAAGCGTGCAAC
TGCACATGTCAGGACTGTTCGAGGACCCGTACCTGGTGGGTCGCGACGCCACCAGTAACAAGCCC
TGTCACCAGACCAACAGACGCTGAGCCACCACCATGGCGCGAAGCGCCAACGGACAATGACACAG
CCGGGAGACTCCATCAGAAGTATCAACAGCACCGAGGCTGTGGTGAGCAAGTATCACCACGCTAA
CGACAAGCTTTTGTAGCCTCCTTGGGGGGATTTTTTTCCCCCATCTTCTTTGATTTTCTCTTTGC
TTGTCGCTGCCTTCCGTAGTAACGGGAAAGGAGCCGGGCTTGCAG
Found at i:232995 original size:12 final size:12
Alignment explanation
Indices: 232936--232999 Score: 56
Period size: 12 Copynumber: 5.3 Consensus size: 12
232926 CTCATCAAAG
* *
232936 ACGAAACCAACG
1 ACGACACCAACA
* * *
232948 ACGATACGAACG
1 ACGACACCAACA
*
232960 ACGACACGAACA
1 ACGACACCAACA
*
232972 ATGACACCAACA
1 ACGACACCAACA
*
232984 ACGACACTAACA
1 ACGACACCAACA
232996 ACGA
1 ACGA
233000 GGACGAGGAA
Statistics
Matches: 44, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
12 44 1.00
ACGTcount: A:0.48, C:0.31, G:0.16, T:0.05
Consensus pattern (12 bp):
ACGACACCAACA
Left flanking sequence: Indices 232436 -- 232935
CGGTATTATTCAGCAGCAGCAGCCCCATCGGAACCCCATCACCATGACCACAGACTCGATGTCCA
GCGATGATGAGCTTGGTGGCGGGTTCATCATGCCACGTACCAACCGCCGCAAGCGCCAGACCCGC
TCGCGCGAGGTCTCCTACACCATTTCCAGCGACGAAGACGTGGATCTAGACGCGTTTGTGCCGGT
AACGGAGCCTCGCAAGCGAATCAAGAAGGAGGTGAAGGTTGAGAGCGAAAGCGACGACGCGTACG
TTGAAGACGAGGCTGCCAGTGAGTCGGAAGACGCGTCTGAGCCCGAGGACGACGACGTAGAGATC
ACCGGGTCGCATACGAACGAGGTGATCGAGCTCTTCAGCAGCGATGACGAGCTGTTGGCCACGAA
GGCGGCCAAGGCAGGCGCTGAGAGCAACGGCAAGGCCAACGGGACCGCCAAAAAGGCCAAGAATG
GCCGTGCAAAGAAGGTGAAGGACGAGGAGGACACCCTCATCAAAG
Right flanking sequence: Indices 233000 -- 233499
GGACGAGGAAAAACCCAAGAAAAAGAAGCGGGCCCCACGGAAAAAGAAGGAGCCCAAGCCCAAAA
TCCCCTACTACACTAGGGTCACCAACAAGTTGTACGAGCAGCATCCTGAATTGAAGGAGGTGTTC
AACCACTTGGCCGAGCTCAAGCCCGGTGCCCCCGTCCAGGCCCCGCATCCCAAGGGCATGACTAT
CCAGCTTCTCCCCTTCCAGCTCGAGGGGTTGCACTGGCTCATCAAACAGGAACAGAGCGAGTTCA
ACGGTGGGGTGCTTGCCGACGAGATGGGGATGGGTAAGACCATTCAGACAATTGCGCTCTTCATG
TCTGACCCCGCCAAACGGCCCAACCTCGTGGTGGGCCCCACTGTGGCGTTGATGCAGTGGAAGAA
CGAGATCGAGGCCCACACGGAGCCGGGCAGCCTCAAGACGCTCTTGTACCACGGGGCTAACCGTC
CGACAGACGTCAAGGAGCTCGAGCAGTACGACGTGATCCTCACGC
Found at i:239113 original size:17 final size:17
Alignment explanation
Indices: 239093--239125 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
239083 CAACCCCACC
239093 AATACAACAAACACACT
1 AATACAACAAACACACT
*
239110 AATACAGCAAACACAC
1 AATACAACAAACACAC
239126 AGCCTCCCAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.58, C:0.30, G:0.03, T:0.09
Consensus pattern (17 bp):
AATACAACAAACACACT
Left flanking sequence: Indices 238593 -- 239092
GGAGAAAGTTTGCGTGGGTTTACGAGGGGTGTCTGCTTAGCTCGGGTTCTATCGAGTCAACTGCA
GCCATTTGACGCGACGGAAAAAAATACGACCATCGACAGTGCCAGTGGACCCGACGGTGGGCACG
ACAAAAATAGAACGGTCGGGTGACTGGATGTGCTGGCCGCCTTGACAGCAAGCGTGGGGTGACCT
GACAGGTGGTGAAACCTCGGATAAGTACGCCAGGCACCCTGTTTCTCTGGAAATTATTCCGGAAA
TAAGGTCGAGTCACGTGGGGAAAAGGACAAGTTCTGTGGCTTGGAGGGGAGGTGAAAACGTAGCC
AGGGGATCCATTTGTCATCCGGGAGGCTCCCATTGTTCTCCACCCACTTTACGTCCCATCCCTCG
TGACGTGATACTAACGATTTGCGTGCGCTAGCCTGAGTCGAGTCAACATTAGACACAATAGCTCC
ACCACTACACATGGCAACAGTAGACAACAGCACCACAACCCCACC
Right flanking sequence: Indices 239126 -- 239625
AGCCTCCCAACACCCACCACCCCAGCACCACCCCTTCCCCTGTCTCTTCATCTTCCTTCTCCCCT
GCAGTACCGGTCGCGCCCGATCTAAGACCCCCACCCTTTCCACGGCAACCACCCCGACAATGGAC
TACAAGCGCCCCGAGCGGAACTCGTACTTTCTAAGTCAGTACCCGCTCTACTGCAGCGACTGGCT
CGCCGGGGAGCCCGACACCGTGGCCCTCCTGACCTACAAGGAAGGGCTGTCCAACAAGATCCAGG
TGATCCAGGGGACCGCGGACCCCGAGGGGATCGACTGGGAGCCGGTGGCTGAAGCACAGCTCGAC
TACCCCGTCACCCACTTGCAATGGGACCCCGCCAACACCATGCGGCTTGCAGCCCTGCTGGAGTT
GTTGCGGTTGTACAAGCTCGACTACGACCCCGAGCCCCGGTTGGTGCAGACCCACCTGCTTGCCA
ACAACACGACAAACAAGGACGACATCAACACCTACCCGCCGGTGA
Found at i:240509 original size:40 final size:40
Alignment explanation
Indices: 240411--240524 Score: 117
Period size: 40 Copynumber: 2.9 Consensus size: 40
240401 AGTGGAAATG
* *
240411 GTGGAGACAGATG-T-TGGTAGAGTAATTGGTGGAAAAAG
1 GTGGAGACAGATGTTCTGGTAGAGGAATTGGTGGAAAAAA
* ***
240449 GTGGAAACTTTTGTTGCTGGTAGAGGAA-TGGTGGAAAAAA
1 GTGGAGACAGATGTT-CTGGTAGAGGAATTGGTGGAAAAAA
**
240489 GTGGAGACAGATGTTCCTGGTAGATCAATTGGTGGA
1 GTGGAGACAGATGTT-CTGGTAGAGGAATTGGTGGA
240525 GTGAGCTAGT
Statistics
Matches: 59, Mismatches: 13, Indels: 5
0.77 0.17 0.06
Matches are distributed among these distances:
38 9 0.15
39 1 0.02
40 32 0.54
41 17 0.29
ACGTcount: A:0.31, C:0.06, G:0.37, T:0.26
Consensus pattern (40 bp):
GTGGAGACAGATGTTCTGGTAGAGGAATTGGTGGAAAAAA
Left flanking sequence: Indices 239911 -- 240410
TTTTGAAGTTGCTGACGTCCAACATCGACCAGCACCACTTGGCCACCATTGGCGTCAACTCGAAC
GAGGTGATCATCATCGACATGCGAATGCCGGGCCTTCCCGTGGCGACGATCGACGGGCTGCTTGG
CGGGGTGCTGAACGCGCCCATCAACCTGATCCAGTGGCATCCGTCGTCGAACTTTTTGTTGACCG
GGGGCGACGACTGCCAGGCGCTCGTGTGGGACTGCTCGAAGATCGTGGGCGATCTGGGCACCGTG
ATCGACTGCCCGGTGTTGGCGTACGAGGAGGACACCGAGGTCAACAACGTGTGCTGGCGCCAGGA
CCACGGCGACTGGATAGGTGTGGTGGGGGGCAAGGGCTTCCAGGCGGTGGCCATTTGACAAACAG
GCTAGGATAGCAGTCCACATTACGATAATACACGAGATAGAGAGTAGGGGGAGAAGGGGTGGGGT
AGAGGTGCAGGCAGATGCTGTGTAGGCAGTTGAGTAGTGGAAATG
Right flanking sequence: Indices 240525 -- 241024
GTGAGCTAGTCGTTGCATGGAGGTATCAGTGTGGGGTAAGCTCCATGCTTTGTTTGATGTGTTTA
CTGTATGGTCAAACCGTTGTGGTGGTCCTGTTGCAGTAGTCAAACCTTTGTAGTAATCTGTTGCA
GTAGTCTACAGTGTAGTAGTCAGTGGCAGCAGTCAAGTGCAGTCTAGCACTACTCGTAGTCATAT
TTTCAGTAGTCATTGGGCAACAGACATTGCAGCCGTTGTAGGAAATTACAGTTACTAGTTCACGG
TGACTCTCGTGTGACATTAACCATCTTGACAGGAAATCAGTCAATTTCGGTTGGTAGTGATCGAC
ACTGGTATTGTGGGGAACGTTACCGTGGCGCAGCCACAGAACAATGGAGTTTCATTCAGCACGGT
GGGAATGCAAATTATAATTTTGTAAGCAGGCACTTCCCCCATGCCTCGTCTCACCCGCCTCGTTT
CCAGAATGGCAATAACGACCGCAGTTGGGTATTGTTCCGGGGACT
Found at i:240632 original size:31 final size:30
Alignment explanation
Indices: 240597--240660 Score: 83
Period size: 31 Copynumber: 2.1 Consensus size: 30
240587 TTACTGTATG
* **
240597 GTCAAACCGTTGTGGTGGTCCTGTTGCAGTA
1 GTCAAACCGTTGTAGTAAT-CTGTTGCAGTA
*
240628 GTCAAACCTTTGTAGTAATCTGTTGCAGTA
1 GTCAAACCGTTGTAGTAATCTGTTGCAGTA
240658 GTC
1 GTC
240661 TACAGTGTAG
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
30 14 0.48
31 15 0.52
ACGTcount: A:0.20, C:0.19, G:0.27, T:0.34
Consensus pattern (30 bp):
GTCAAACCGTTGTAGTAATCTGTTGCAGTA
Left flanking sequence: Indices 240097 -- 240596
TGTTGACCGGGGGCGACGACTGCCAGGCGCTCGTGTGGGACTGCTCGAAGATCGTGGGCGATCTG
GGCACCGTGATCGACTGCCCGGTGTTGGCGTACGAGGAGGACACCGAGGTCAACAACGTGTGCTG
GCGCCAGGACCACGGCGACTGGATAGGTGTGGTGGGGGGCAAGGGCTTCCAGGCGGTGGCCATTT
GACAAACAGGCTAGGATAGCAGTCCACATTACGATAATACACGAGATAGAGAGTAGGGGGAGAAG
GGGTGGGGTAGAGGTGCAGGCAGATGCTGTGTAGGCAGTTGAGTAGTGGAAATGGTGGAGACAGA
TGTTGGTAGAGTAATTGGTGGAAAAAGGTGGAAACTTTTGTTGCTGGTAGAGGAATGGTGGAAAA
AAGTGGAGACAGATGTTCCTGGTAGATCAATTGGTGGAGTGAGCTAGTCGTTGCATGGAGGTATC
AGTGTGGGGTAAGCTCCATGCTTTGTTTGATGTGTTTACTGTATG
Right flanking sequence: Indices 240661 -- 241160
TACAGTGTAGTAGTCAGTGGCAGCAGTCAAGTGCAGTCTAGCACTACTCGTAGTCATATTTTCAG
TAGTCATTGGGCAACAGACATTGCAGCCGTTGTAGGAAATTACAGTTACTAGTTCACGGTGACTC
TCGTGTGACATTAACCATCTTGACAGGAAATCAGTCAATTTCGGTTGGTAGTGATCGACACTGGT
ATTGTGGGGAACGTTACCGTGGCGCAGCCACAGAACAATGGAGTTTCATTCAGCACGGTGGGAAT
GCAAATTATAATTTTGTAAGCAGGCACTTCCCCCATGCCTCGTCTCACCCGCCTCGTTTCCAGAA
TGGCAATAACGACCGCAGTTGGGTATTGTTCCGGGGACTCACGGTGACCGCGCTACCCTGTTGAC
ACCGGACCGGCGGAGAAAAGCGGAGAAGGCCCTGGTGACTCAGGGACCGTTGCCGAGAGCAAGCG
CCGTGCATGGCGACATATCACGCGGCTGGTTCCCCGCGTGGCGTT
Found at i:242315 original size:21 final size:21
Alignment explanation
Indices: 242255--242315 Score: 68
Period size: 21 Copynumber: 2.9 Consensus size: 21
242245 GCTGTGGCCG
* *
242255 CAACCCGAGTACCAACCGCGC
1 CAACCCGACTTCCAACCGCGC
*
242276 CAACCCGACTTTCAACCGCGC
1 CAACCCGACTTCCAACCGCGC
** *
242297 CAGGCCGACTTCCAGCCGC
1 CAACCCGACTTCCAACCGC
242316 CCCCCGTCAA
Statistics
Matches: 33, Mismatches: 7, Indels: 0
0.82 0.17 0.00
Matches are distributed among these distances:
21 33 1.00
ACGTcount: A:0.23, C:0.48, G:0.20, T:0.10
Consensus pattern (21 bp):
CAACCCGACTTCCAACCGCGC
Left flanking sequence: Indices 241755 -- 242254
ATGTGAAACACGCTCGAGCCACGTCGAGGGGAAAACAATACGCCCGTAAGGGTAACTGATGTGTC
TGCATAGAGCCACAGGGGATTTTCAGCAACAAGGAGTGCTGCGGTGGGCGGTGGCGGCCACGCCC
GCCCGCGACCCGGGCAAACGTAGACCGCGCGGGCGGCCAGGCAGCGGGCCCCGACCCGCGTTTGT
GCCGGCGCCAAAGTGGGCCCACTTGCGCCAGCTTCGAAGGCGCAATGCAAGATTGCTTTTAGTGG
CGGGTTTGTTCTACCGTCTTCGGTGATGCACACCGGCGATCGCAGTATATAAGTCAGGGCAAACG
CGGGGCCGCCAACTATGAACGAACCACCACGTTGAATCCGCCCGACAAAAACACCAATCCGATGC
AAGAGGGGGATGACGAATGGATTCGCATGGCCAGCAGCTCTGCCCCCCACCCTGACCGGTGGGAT
CTATGGATGAACCTGAACCCTAATGCCGCGCCACCGCTGTGGCCG
Right flanking sequence: Indices 242316 -- 242815
CCCCCGTCAAGGTGGAGCCGCCCACACCCTCGCCCCAGGCCCCGCAGACCCCGTTTGCCGCGCTG
CAGTCCGAGCTTCTCCAGTCGCGGCTCAAGAAGCACAACCGCGTCGAAAAGAAGTACCGCGAAAA
CATCAACGCCAAGATGGCGTGCCTCCAGCGCACGATTCCCTGGACGGCCAAGGCACGCCCCGCGT
TCCTGGTGGGCCTCGACCCCGCCCCCCACACCCCCGGCCCCCCGGGCAAGCGCCTCAACAAGACG
GAGATCCTCGACGTCGCCACCAACTACATTATCTACTTGCAGCACGAGGTCACGCGGTTGACCCA
GGAAAACGGCCACTTGCGCCAGGAGTTGGCCGCACGCAACCCTTGAATTCTACCATTCTAATACA
CATTCGTCTCTGTAACTAGCGTATTTGCCGCGTGCCTTGTGCATGCGCAGAAGGATCTGGAATTC
CTGCAACCTCTGAGAAAATATATTGAATATGGAATTTTGCGTCGG
Found at i:246998 original size:8 final size:8
Alignment explanation
Indices: 246985--247029 Score: 56
Period size: 8 Copynumber: 5.5 Consensus size: 8
246975 GGGGAAAGGC
246985 AATGGGTG
1 AATGGGTG
246993 AATGGG-G
1 AATGGGTG
*
247000 AAATGGGGG
1 -AATGGGTG
247009 AATGGGTG
1 AATGGGTG
247017 AATGGGGTG
1 AAT-GGGTG
247026 AATG
1 AATG
247030 TTAGTAAAGG
Statistics
Matches: 33, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
7 1 0.03
8 23 0.70
9 9 0.27
ACGTcount: A:0.29, C:0.00, G:0.51, T:0.20
Consensus pattern (8 bp):
AATGGGTG
Left flanking sequence: Indices 246485 -- 246984
CTCGGCCACTTCCAGGAGCGACGTGTAGTCGATGTGCTCTTGGTGGGCCATTTCGCGGTGCACCA
TCAGCACCAATTGCGCCTTGGTGAGCTCGGGGGTCAACCGCAACCGCACCACGAACAGCGGGGTG
TCGGGCAGGGCGTCGGTGGCGATGACAATGTCGTCGTCCCCCGTCAACCGGTAGATCAACGCGGC
GAACGCTGCTAGGGTGTCGACGAAGGGGGCCGCGAGCGGGAAGTCGAGCGAGGCCTCCACCGCCT
GGTTGTTGGCGGGCTTCAAGAAGTCGTGCGGCAACACCGAGAGCGTCGGGTTGTCCAAGTACTCT
TGCCAGAACATGGTGGGCGATGAAGAATTTTTCTGTGAAAAATCGCCGATAACGGGAGGGTGCTG
GTTATGAGTCACCACGGCGTTGTGCGAAGAGTCATAGGGATGGGGTAGAGAAGGGTGAGAAGAGA
GATTGGGAGAATGGGGAAGGGGAGAGGGTTGGTAAGGGGAAAGGC
Right flanking sequence: Indices 247030 -- 247529
TTAGTAAAGGTGGTTAGTGAGGTGGTAAGGTTGGTTAGTATGGTGGTAGTATGAGTATAGTATGA
GTGGGTATGAGTGGGTATGAGTAGTTGGTTAGAGTGGTAAGAATGGTTTATGTGTGATGGTTGGT
TCTGCAGTGGTGATATTTGGATGATTGATCGTTTTAGTTGATCAAAATTCCACCCCTAACGGCCC
TTTTCCGGCATACCCCGGACTCCTGAACTGGGCCAGGCACGCCTCGGGCCGCGCACGACCACGGC
TGAAGCACGGGGTCCAATGCATGGTGGCCATGAAATCGGGCGGACCGTGACCGGTTGCTGTCTTT
GTTCTCGTGCAGCTGCTGCCATTTGTGGCTCACACGTCGCTTTGTTTCCCGTCAGCTGTGCATAG
AGAAGCTCCAACCGACCTCAGATTACACCCACGTGCCTACCGCTGTCGCCCGTCCAACGTATCAC
CTTGATCATCCTGGTTTTTCCTCCTGGATCATTCCCACCGCCTCT
Found at i:247057 original size:21 final size:22
Alignment explanation
Indices: 247033--247077 Score: 60
Period size: 21 Copynumber: 2.1 Consensus size: 22
247023 GTGAATGTTA
247033 GTAAAGG-TGGTTAGTGA-GGTG
1 GTAAAGGTTGGTTAGT-ATGGTG
247054 GT-AAGGTTGGTTAGTATGGTG
1 GTAAAGGTTGGTTAGTATGGTG
247075 GTA
1 GTA
247078 GTATGAGTAT
Statistics
Matches: 21, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
20 5 0.24
21 16 0.76
ACGTcount: A:0.22, C:0.00, G:0.44, T:0.33
Consensus pattern (22 bp):
GTAAAGGTTGGTTAGTATGGTG
Left flanking sequence: Indices 246533 -- 247032
CATTTCGCGGTGCACCATCAGCACCAATTGCGCCTTGGTGAGCTCGGGGGTCAACCGCAACCGCA
CCACGAACAGCGGGGTGTCGGGCAGGGCGTCGGTGGCGATGACAATGTCGTCGTCCCCCGTCAAC
CGGTAGATCAACGCGGCGAACGCTGCTAGGGTGTCGACGAAGGGGGCCGCGAGCGGGAAGTCGAG
CGAGGCCTCCACCGCCTGGTTGTTGGCGGGCTTCAAGAAGTCGTGCGGCAACACCGAGAGCGTCG
GGTTGTCCAAGTACTCTTGCCAGAACATGGTGGGCGATGAAGAATTTTTCTGTGAAAAATCGCCG
ATAACGGGAGGGTGCTGGTTATGAGTCACCACGGCGTTGTGCGAAGAGTCATAGGGATGGGGTAG
AGAAGGGTGAGAAGAGAGATTGGGAGAATGGGGAAGGGGAGAGGGTTGGTAAGGGGAAAGGCAAT
GGGTGAATGGGGAAATGGGGGAATGGGTGAATGGGGTGAATGTTA
Right flanking sequence: Indices 247078 -- 247577
GTATGAGTATAGTATGAGTGGGTATGAGTGGGTATGAGTAGTTGGTTAGAGTGGTAAGAATGGTT
TATGTGTGATGGTTGGTTCTGCAGTGGTGATATTTGGATGATTGATCGTTTTAGTTGATCAAAAT
TCCACCCCTAACGGCCCTTTTCCGGCATACCCCGGACTCCTGAACTGGGCCAGGCACGCCTCGGG
CCGCGCACGACCACGGCTGAAGCACGGGGTCCAATGCATGGTGGCCATGAAATCGGGCGGACCGT
GACCGGTTGCTGTCTTTGTTCTCGTGCAGCTGCTGCCATTTGTGGCTCACACGTCGCTTTGTTTC
CCGTCAGCTGTGCATAGAGAAGCTCCAACCGACCTCAGATTACACCCACGTGCCTACCGCTGTCG
CCCGTCCAACGTATCACCTTGATCATCCTGGTTTTTCCTCCTGGATCATTCCCACCGCCTCTCAC
TTTTTAACCACCATACCCACCTTGGGACCCTCTCACCCAATTAGG
Found at i:247104 original size:10 final size:10
Alignment explanation
Indices: 247089--247116 Score: 56
Period size: 10 Copynumber: 2.8 Consensus size: 10
247079 TATGAGTATA
247089 GTATGAGTGG
1 GTATGAGTGG
247099 GTATGAGTGG
1 GTATGAGTGG
247109 GTATGAGT
1 GTATGAGT
247117 AGTTGGTTAG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.21, C:0.00, G:0.46, T:0.32
Consensus pattern (10 bp):
GTATGAGTGG
Left flanking sequence: Indices 246589 -- 247088
GCAACCGCACCACGAACAGCGGGGTGTCGGGCAGGGCGTCGGTGGCGATGACAATGTCGTCGTCC
CCCGTCAACCGGTAGATCAACGCGGCGAACGCTGCTAGGGTGTCGACGAAGGGGGCCGCGAGCGG
GAAGTCGAGCGAGGCCTCCACCGCCTGGTTGTTGGCGGGCTTCAAGAAGTCGTGCGGCAACACCG
AGAGCGTCGGGTTGTCCAAGTACTCTTGCCAGAACATGGTGGGCGATGAAGAATTTTTCTGTGAA
AAATCGCCGATAACGGGAGGGTGCTGGTTATGAGTCACCACGGCGTTGTGCGAAGAGTCATAGGG
ATGGGGTAGAGAAGGGTGAGAAGAGAGATTGGGAGAATGGGGAAGGGGAGAGGGTTGGTAAGGGG
AAAGGCAATGGGTGAATGGGGAAATGGGGGAATGGGTGAATGGGGTGAATGTTAGTAAAGGTGGT
TAGTGAGGTGGTAAGGTTGGTTAGTATGGTGGTAGTATGAGTATA
Right flanking sequence: Indices 247117 -- 247616
AGTTGGTTAGAGTGGTAAGAATGGTTTATGTGTGATGGTTGGTTCTGCAGTGGTGATATTTGGAT
GATTGATCGTTTTAGTTGATCAAAATTCCACCCCTAACGGCCCTTTTCCGGCATACCCCGGACTC
CTGAACTGGGCCAGGCACGCCTCGGGCCGCGCACGACCACGGCTGAAGCACGGGGTCCAATGCAT
GGTGGCCATGAAATCGGGCGGACCGTGACCGGTTGCTGTCTTTGTTCTCGTGCAGCTGCTGCCAT
TTGTGGCTCACACGTCGCTTTGTTTCCCGTCAGCTGTGCATAGAGAAGCTCCAACCGACCTCAGA
TTACACCCACGTGCCTACCGCTGTCGCCCGTCCAACGTATCACCTTGATCATCCTGGTTTTTCCT
CCTGGATCATTCCCACCGCCTCTCACTTTTTAACCACCATACCCACCTTGGGACCCTCTCACCCA
ATTAGGCAATCTGCAACGTTCCATACATTCGTCGTATATTACGTG
Found at i:247104 original size:21 final size:21
Alignment explanation
Indices: 247065--247106 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
247055 TAAGGTTGGT
247065 TAGTATGGTGGTAGTATGAGTA
1 TAGTATGGTGG-AGTATGAGTA
247087 TAGTATGAGTGG-GTATGAGT
1 TAGTATG-GTGGAGTATGAGT
247107 GGGTATGAGT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 8 0.42
22 7 0.37
23 4 0.21
ACGTcount: A:0.26, C:0.00, G:0.38, T:0.36
Consensus pattern (21 bp):
TAGTATGGTGGAGTATGAGTA
Left flanking sequence: Indices 246565 -- 247064
CCTTGGTGAGCTCGGGGGTCAACCGCAACCGCACCACGAACAGCGGGGTGTCGGGCAGGGCGTCG
GTGGCGATGACAATGTCGTCGTCCCCCGTCAACCGGTAGATCAACGCGGCGAACGCTGCTAGGGT
GTCGACGAAGGGGGCCGCGAGCGGGAAGTCGAGCGAGGCCTCCACCGCCTGGTTGTTGGCGGGCT
TCAAGAAGTCGTGCGGCAACACCGAGAGCGTCGGGTTGTCCAAGTACTCTTGCCAGAACATGGTG
GGCGATGAAGAATTTTTCTGTGAAAAATCGCCGATAACGGGAGGGTGCTGGTTATGAGTCACCAC
GGCGTTGTGCGAAGAGTCATAGGGATGGGGTAGAGAAGGGTGAGAAGAGAGATTGGGAGAATGGG
GAAGGGGAGAGGGTTGGTAAGGGGAAAGGCAATGGGTGAATGGGGAAATGGGGGAATGGGTGAAT
GGGGTGAATGTTAGTAAAGGTGGTTAGTGAGGTGGTAAGGTTGGT
Right flanking sequence: Indices 247107 -- 247606
GGGTATGAGTAGTTGGTTAGAGTGGTAAGAATGGTTTATGTGTGATGGTTGGTTCTGCAGTGGTG
ATATTTGGATGATTGATCGTTTTAGTTGATCAAAATTCCACCCCTAACGGCCCTTTTCCGGCATA
CCCCGGACTCCTGAACTGGGCCAGGCACGCCTCGGGCCGCGCACGACCACGGCTGAAGCACGGGG
TCCAATGCATGGTGGCCATGAAATCGGGCGGACCGTGACCGGTTGCTGTCTTTGTTCTCGTGCAG
CTGCTGCCATTTGTGGCTCACACGTCGCTTTGTTTCCCGTCAGCTGTGCATAGAGAAGCTCCAAC
CGACCTCAGATTACACCCACGTGCCTACCGCTGTCGCCCGTCCAACGTATCACCTTGATCATCCT
GGTTTTTCCTCCTGGATCATTCCCACCGCCTCTCACTTTTTAACCACCATACCCACCTTGGGACC
CTCTCACCCAATTAGGCAATCTGCAACGTTCCATACATTCGTCGT
Found at i:251592 original size:35 final size:35
Alignment explanation
Indices: 251541--251622 Score: 112
Period size: 35 Copynumber: 2.3 Consensus size: 35
251531 TGAGCAGTCT
* *
251541 GATCTGGACTACCCAGGCGATTTGGACCACCCAGGC
1 GATCTGGACTGCCCAGGCGATCT-GACCACCCAGGC
**
251577 GATCT-GACTGCCCAGGCGATCTGACTGCCCAGGC
1 GATCTGGACTGCCCAGGCGATCTGACCACCCAGGC
251611 GATCTGGACTGC
1 GATCTGGACTGC
251623 TCTAAGGGTC
Statistics
Matches: 41, Mismatches: 4, Indels: 3
0.85 0.08 0.06
Matches are distributed among these distances:
34 15 0.37
35 21 0.51
36 5 0.12
ACGTcount: A:0.20, C:0.33, G:0.29, T:0.18
Consensus pattern (35 bp):
GATCTGGACTGCCCAGGCGATCTGACCACCCAGGC
Left flanking sequence: Indices 251041 -- 251540
GTACACCGACGGCAGCAGGAAGAACTGGGACCGCTCGATGAGCGCAAACACGATGGTGTCCTCCA
TCCGCACCAACGCGTTCCGAATGTTGCCCAACTCGAGCACCGTTTGCTTCTTCATGAAATCCATG
GTGGTTGAAAAATTCTGTGCGCGTTAAGGTGACGAAGAGAGGACGGTGGGAGAAGGGCCGGAGAC
GAGAGATGTGGATGGTTTGTAGAGATCGGAGGTTAGGCGTTGGCTGGTGGCTATGGGAGGATTGT
GGGGTAGAGTGAGCGTGAGAGACGACATGGATCGAGGCGTCTGGGCGTTCGAAACGCTTCGGTTC
GGTAGGTATACGAACACCTGCGAAAATGTCCGCGATAGGCAATTAACGTAGGCGACGGGTAACGT
TTGATTATAAATGCCCAACTTTTGGCGACATGCGGTCTTTGCCTCGCACGGGGCATCCGGGGTTG
CGCCGTGCCTGATAACGGTCCGATAACGGGCTGAATGAGCAGTCT
Right flanking sequence: Indices 251623 -- 252122
TCTAAGGGTCCATGATCTAGGGGTTCAAGCAAAGATACCCCGGAACCCCACGATTTGTACAACGA
AGGATTCGGTACTCCATCACAACTACGAGAGCGCCCTCATGGCATACCCCACAACTACGAGAGCA
CCCCTTCATGGCAAACCCCGCACCTCCGGCTCTACGGACGCCTTAAAGGGCAACTGGAAAAGCGC
GGTACCCCTGAAACGTGCTGTCTTCAGCCGTTTCGGGGACGTCAATTGCGAAACGTCACTGCTGC
CGACATCCCCGACGAATCGTCCGAGATCAACAAAGGACGGCCAATTGGGAGCCTCGTGTCTACAT
ACCTACAAGCACACCCTTGCCTCGTTCCGTGGCCAATCGTAAAGCTGATATTAAGCCAATTCCCC
AAGTTTCAGCCCCTCAAGTTCTATCCCACCAACCACACGTGGATCCCCCCACTCTCCCTACCCAA
CACTTTCTTGGCCCGCGCTACCAGTTGCACCCCTCGCGTACAATG
Found at i:251622 original size:18 final size:18
Alignment explanation
Indices: 251541--251622 Score: 114
Period size: 17 Copynumber: 4.7 Consensus size: 18
251531 TGAGCAGTCT
*
251541 GATCTGGACTACCCAGGC
1 GATCTGGACTGCCCAGGC
* **
251559 GATTTGGACCACCCAGGC
1 GATCTGGACTGCCCAGGC
251577 GATCT-GACTGCCCAGGC
1 GATCTGGACTGCCCAGGC
251594 GATCT-GACTGCCCAGGC
1 GATCTGGACTGCCCAGGC
251611 GATCTGGACTGC
1 GATCTGGACTGC
251623 TCTAAGGGTC
Statistics
Matches: 58, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
17 32 0.55
18 26 0.45
ACGTcount: A:0.20, C:0.33, G:0.29, T:0.18
Consensus pattern (18 bp):
GATCTGGACTGCCCAGGC
Left flanking sequence: Indices 251041 -- 251540
GTACACCGACGGCAGCAGGAAGAACTGGGACCGCTCGATGAGCGCAAACACGATGGTGTCCTCCA
TCCGCACCAACGCGTTCCGAATGTTGCCCAACTCGAGCACCGTTTGCTTCTTCATGAAATCCATG
GTGGTTGAAAAATTCTGTGCGCGTTAAGGTGACGAAGAGAGGACGGTGGGAGAAGGGCCGGAGAC
GAGAGATGTGGATGGTTTGTAGAGATCGGAGGTTAGGCGTTGGCTGGTGGCTATGGGAGGATTGT
GGGGTAGAGTGAGCGTGAGAGACGACATGGATCGAGGCGTCTGGGCGTTCGAAACGCTTCGGTTC
GGTAGGTATACGAACACCTGCGAAAATGTCCGCGATAGGCAATTAACGTAGGCGACGGGTAACGT
TTGATTATAAATGCCCAACTTTTGGCGACATGCGGTCTTTGCCTCGCACGGGGCATCCGGGGTTG
CGCCGTGCCTGATAACGGTCCGATAACGGGCTGAATGAGCAGTCT
Right flanking sequence: Indices 251623 -- 252122
TCTAAGGGTCCATGATCTAGGGGTTCAAGCAAAGATACCCCGGAACCCCACGATTTGTACAACGA
AGGATTCGGTACTCCATCACAACTACGAGAGCGCCCTCATGGCATACCCCACAACTACGAGAGCA
CCCCTTCATGGCAAACCCCGCACCTCCGGCTCTACGGACGCCTTAAAGGGCAACTGGAAAAGCGC
GGTACCCCTGAAACGTGCTGTCTTCAGCCGTTTCGGGGACGTCAATTGCGAAACGTCACTGCTGC
CGACATCCCCGACGAATCGTCCGAGATCAACAAAGGACGGCCAATTGGGAGCCTCGTGTCTACAT
ACCTACAAGCACACCCTTGCCTCGTTCCGTGGCCAATCGTAAAGCTGATATTAAGCCAATTCCCC
AAGTTTCAGCCCCTCAAGTTCTATCCCACCAACCACACGTGGATCCCCCCACTCTCCCTACCCAA
CACTTTCTTGGCCCGCGCTACCAGTTGCACCCCTCGCGTACAATG
Found at i:251741 original size:32 final size:34
Alignment explanation
Indices: 251705--251771 Score: 102
Period size: 32 Copynumber: 2.0 Consensus size: 34
251695 GGTACTCCAT
* *
251705 CACAACTACGAGAGC-GCCC-TCATGGCATACCC
1 CACAACTACGAGAGCACCCCTTCATGGCAAACCC
251737 CACAACTACGAGAGCACCCCTTCATGGCAAACCC
1 CACAACTACGAGAGCACCCCTTCATGGCAAACCC
251771 C
1 C
251772 GCACCTCCGG
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
32 15 0.48
33 3 0.10
34 13 0.42
ACGTcount: A:0.30, C:0.42, G:0.16, T:0.12
Consensus pattern (34 bp):
CACAACTACGAGAGCACCCCTTCATGGCAAACCC
Left flanking sequence: Indices 251205 -- 251704
AAGAGAGGACGGTGGGAGAAGGGCCGGAGACGAGAGATGTGGATGGTTTGTAGAGATCGGAGGTT
AGGCGTTGGCTGGTGGCTATGGGAGGATTGTGGGGTAGAGTGAGCGTGAGAGACGACATGGATCG
AGGCGTCTGGGCGTTCGAAACGCTTCGGTTCGGTAGGTATACGAACACCTGCGAAAATGTCCGCG
ATAGGCAATTAACGTAGGCGACGGGTAACGTTTGATTATAAATGCCCAACTTTTGGCGACATGCG
GTCTTTGCCTCGCACGGGGCATCCGGGGTTGCGCCGTGCCTGATAACGGTCCGATAACGGGCTGA
ATGAGCAGTCTGATCTGGACTACCCAGGCGATTTGGACCACCCAGGCGATCTGACTGCCCAGGCG
ATCTGACTGCCCAGGCGATCTGGACTGCTCTAAGGGTCCATGATCTAGGGGTTCAAGCAAAGATA
CCCCGGAACCCCACGATTTGTACAACGAAGGATTCGGTACTCCAT
Right flanking sequence: Indices 251772 -- 252271
GCACCTCCGGCTCTACGGACGCCTTAAAGGGCAACTGGAAAAGCGCGGTACCCCTGAAACGTGCT
GTCTTCAGCCGTTTCGGGGACGTCAATTGCGAAACGTCACTGCTGCCGACATCCCCGACGAATCG
TCCGAGATCAACAAAGGACGGCCAATTGGGAGCCTCGTGTCTACATACCTACAAGCACACCCTTG
CCTCGTTCCGTGGCCAATCGTAAAGCTGATATTAAGCCAATTCCCCAAGTTTCAGCCCCTCAAGT
TCTATCCCACCAACCACACGTGGATCCCCCCACTCTCCCTACCCAACACTTTCTTGGCCCGCGCT
ACCAGTTGCACCCCTCGCGTACAATGGACCGCAGGAGATGTCGCTGTTGCCATTATGTGGGGAAT
CCCGCCCCACGTTCGCTTGTTCGTTTCTTTTCTGATTTGATGCTATATTGTTTTTAACTATATCA
CCCAAACTGGGAAAGATGCACGCTTCGTAAACCATAAAGGGGTAT
Found at i:255468 original size:13 final size:14
Alignment explanation
Indices: 255423--255471 Score: 73
Period size: 14 Copynumber: 3.6 Consensus size: 14
255413 TACCCCAGTG
255423 TCACACCCATGAAT
1 TCACACCCATGAAT
255437 TCACACCCATGAAT
1 TCACACCCATGAAT
*
255451 TCACA-CCATTAAT
1 TCACACCCATGAAT
*
255464 CCACACCC
1 TCACACCC
255472 GGGCCACCAC
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
13 11 0.34
14 21 0.66
ACGTcount: A:0.35, C:0.41, G:0.04, T:0.20
Consensus pattern (14 bp):
TCACACCCATGAAT
Left flanking sequence: Indices 254923 -- 255422
AAGCGGCTCCAGTACTCCGAGGACGACCACATCTTCTCGTTGAGCTCGACAAACTATCTCAAACA
GATGATGAAGAAGCAGGGCACCGCTAACGGCACGACGATCGACGACTACGAGGACGTGGTGGAGC
CACGCGACCAGGGCGCCGGGTCTCCCAGCGTGCCAGCCGCGCCGTCCGACGACGGGTCGGCCTCG
AGCCCGCCCGCCCGCAAGCGCAAGTCGCGTATCCCCGATGAGTAGTCGTCGACACCAGAGTCGAG
TCGACACACCAGAGAACCCTTCATAATATATAGTAACGAGTCACGAGTCATCAAGGAAAGGAACC
TGTGAATTGTAGAAACATCGGGAAGATCATTACGCGTCCAGCGGGATGACTGACCACTGAGAACA
AGGACCATAACCAAGCATAGGAAGTGATAGGAAGTGACTCCCAAGCTCAGGTCAACTTAGTGATC
AGGCAGTCCCAGACACCAAACAAGCACATAATCACTACCCCAGTG
Right flanking sequence: Indices 255472 -- 255971
GGGCCACCACTACACAATCTAATCAACGTTTTGTCTAATCTACTTACTCGGCGTCACCGGTCTGG
CCCTCGAACTTGGTCAAGTTCTTGGTGCCCTCGTCCCACGCCACCCCGTCGTAGGTCATGGCCTT
GATGGCGTCCACCACGTCCTCGAAGGTGCCTCTCACCTGGGTGGTGGAGTCACGGTCACGGAGGG
TCACCGACTCGTCCTTGGTGGAGTCAAAGTCGATGGTGATGCCGAAGGGGGTCCCCAACTCGTCG
TTACGCGCGTAACGCTTACCAATGGACGCCAGCGAGTCGTCCACCTTGAAGGGGAGCTTCTGCTT
GCGGAGGTAGGCACTCACCTTCTGGGTGATGGGCTTGAGCTCGGCCGCGTTGGAAAGAGGCACCA
ACAACACCTTGGTGGGCGCCACGAGCGGCGGCAAGCTCAACACCCCGCGGTCAGCGTCGCCCGCA
CGGGTGTAGAACGAGTGCTCGAACAACAGGTACAAGATCCGCCCA
Found at i:258295 original size:13 final size:13
Alignment explanation
Indices: 258277--258357 Score: 117
Period size: 13 Copynumber: 6.2 Consensus size: 13
258267 GAAAACGGTA
258277 TCCACATATCATC
1 TCCACATATCATC
258290 TCCACATATCATC
1 TCCACATATCATC
258303 TCCACATATCATC
1 TCCACATATCATC
*
258316 TTCACATATCATC
1 TCCACATATCATC
* *
258329 TTCACATACCATC
1 TCCACATATCATC
* *
258342 ACCACACATCATC
1 TCCACATATCATC
258355 TCC
1 TCC
258358 CACTCTAACA
Statistics
Matches: 61, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
13 61 1.00
ACGTcount: A:0.31, C:0.40, G:0.00, T:0.30
Consensus pattern (13 bp):
TCCACATATCATC
Left flanking sequence: Indices 257777 -- 258276
CAAGAGAGCCAGAGACCGCCGCTGGGTGGTCACTCGGGGTCGGTTACCCCATTGGGCCAAAAACA
CCTGTTTTGGCTAGGTTTGGTGACTCAACGTCGGTGCTCGTATCTGAACTCCGACGATCGGTGGG
TGGTGGAGACGAGAAGTTCGAGGCGGGAGAGGTACGTCTAGGGTGGGCTGAGGGTATGAGTGATA
CCGTTGGTAGTAGTGAAGAGCTGGGGACGGGCCAATTGGCGAGGCCATGCCCAGAACTTGTTTCA
GGGTGGAGGAGGGGTGGACTTGAATGTCCGTGAGGGGAAGCGCAAACCTAATCTGGGGTGTAAAC
AGTGACCAGTGTTTACAATTGGGTTGCTGGGGCGGCGTGCTAGCAACAATGGATCTGGTCTGAGA
TTAGGTTGGGTGGGTGGCCAGGAATATGTGGTTTATTTTCAAGATTTTGGGAAAAGGACGGTGTT
GATGGTAAAATCTACATGAGTATCTAATCAATCACGAAAACGGTA
Right flanking sequence: Indices 258358 -- 258857
CACTCTAACACTTCACCCGCCTAAACTCATATAGGTTTTTAGGTGTCACTACCATCACATTAGAG
TCTCTTCTCAGCATGTGGGCCAAAGAATCGGAGATTCTCTCCGGCCACGGGAGAATGTCTCATGC
CACGGACTATCTCATGCTACGGGACTTTCTCATGCCCAGACTATACCATACTATCTCATGCCAGC
CTATCCCCGGAGACACGTGGTAGGCCGTAAGCCCCTCACACTACTCGGCACCATTGTCTCCCTCC
GCCATTGTGCTCTCATATGTCATAAATCCATTCCCTACCTACCTATTCCTTCTTCTCCTTGCTAC
AAAGGTCACAGTCCTTCTTGAAAATCATGTCCTTCCACTGGGGGTTGTGGGTCCGCTTGTAGTAC
ACGTACTGCAGCCACGGGTACGCCGTAGCGTTGTGCCCGTTCTCGGTGTACCACGACTTGCACCC
GCCAAACTCGGTGCCGTAGACACAGTTCTTAAGCTCCTTCTGCAC
Found at i:258502 original size:17 final size:18
Alignment explanation
Indices: 258480--258523 Score: 63
Period size: 18 Copynumber: 2.5 Consensus size: 18
258470 CGGGAGAATG
258480 TCTCATGCCAC-GGACTA
1 TCTCATGCCACGGGACTA
* *
258497 TCTCATGCTACGGGACTT
1 TCTCATGCCACGGGACTA
258515 TCTCATGCC
1 TCTCATGCC
258524 CAGACTATAC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
17 10 0.43
18 13 0.57
ACGTcount: A:0.18, C:0.34, G:0.18, T:0.30
Consensus pattern (18 bp):
TCTCATGCCACGGGACTA
Left flanking sequence: Indices 257980 -- 258479
AGTAGTGAAGAGCTGGGGACGGGCCAATTGGCGAGGCCATGCCCAGAACTTGTTTCAGGGTGGAG
GAGGGGTGGACTTGAATGTCCGTGAGGGGAAGCGCAAACCTAATCTGGGGTGTAAACAGTGACCA
GTGTTTACAATTGGGTTGCTGGGGCGGCGTGCTAGCAACAATGGATCTGGTCTGAGATTAGGTTG
GGTGGGTGGCCAGGAATATGTGGTTTATTTTCAAGATTTTGGGAAAAGGACGGTGTTGATGGTAA
AATCTACATGAGTATCTAATCAATCACGAAAACGGTATCCACATATCATCTCCACATATCATCTC
CACATATCATCTTCACATATCATCTTCACATACCATCACCACACATCATCTCCCACTCTAACACT
TCACCCGCCTAAACTCATATAGGTTTTTAGGTGTCACTACCATCACATTAGAGTCTCTTCTCAGC
ATGTGGGCCAAAGAATCGGAGATTCTCTCCGGCCACGGGAGAATG
Right flanking sequence: Indices 258524 -- 259023
CAGACTATACCATACTATCTCATGCCAGCCTATCCCCGGAGACACGTGGTAGGCCGTAAGCCCCT
CACACTACTCGGCACCATTGTCTCCCTCCGCCATTGTGCTCTCATATGTCATAAATCCATTCCCT
ACCTACCTATTCCTTCTTCTCCTTGCTACAAAGGTCACAGTCCTTCTTGAAAATCATGTCCTTCC
ACTGGGGGTTGTGGGTCCGCTTGTAGTACACGTACTGCAGCCACGGGTACGCCGTAGCGTTGTGC
CCGTTCTCGGTGTACCACGACTTGCACCCGCCAAACTCGGTGCCGTAGACACAGTTCTTAAGCTC
CTTCTGCACCGTGTCCTTCCACTCCTCGTACTTCTCGGGCTTGACCCGCACCGACACCCCCTCGT
CGAGGATCCGCTTCAGCACCTTCGCCACGAACTCACACCCGTTCTCGATGGCAGTGACCACGGAA
AAGTGGCCGGTGCCGGCGTTGGGGCCCACCAACGCGAAGTAGTTG
Found at i:260397 original size:11 final size:11
Alignment explanation
Indices: 260381--260408 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
260371 TGTCAATGAA
260381 CGGCCGTGCTG
1 CGGCCGTGCTG
260392 CGGCCGTGCTG
1 CGGCCGTGCTG
260403 CGGCCG
1 CGGCCG
260409 AACTCCGATG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.00, C:0.39, G:0.46, T:0.14
Consensus pattern (11 bp):
CGGCCGTGCTG
Left flanking sequence: Indices 259881 -- 260380
CAACTGGATGTGTCTGCGCAAGTCGTGCTTGTCGACGACGTCGGAGATGTAGGTCTGCATTTCGT
GGTAGATGGGCTGGGGGAGCGACCAGTTCAGGCACAACTCGTTGGAGAACAGGTACAACAACGCC
GGCACGTCCAGCAGGCACCCGGGGTAGGTGTTCATCCACCAGGTGCCTCCGACACCCTTCACGCG
GTCAAACACCACGTAGTCGTCGGTCTTGAGCTTGTTCTGGATCATCATCAGCGCCGCCAACCCGG
AGAAACCAGCTCCGATGATAGCCACCTTCAGCTTGGACCGGATCACGGGCAACGCATCGTTGGTG
GGGACGGTGGCCTTGGGGAGAAGCACCTTGGCCGCGTCGGGGTATTGCACGCGGAACTGGTCGGG
CACGGTGTGCGAGCGCTTGCTTAACGTGACAACACTCATCGATGGGGTGTGCACGGCGGTAGGGG
TGCTATTTATGTTCCCCGCGACTCACATGTGAATGTGTCAATGAA
Right flanking sequence: Indices 260409 -- 260908
AACTCCGATGCGAAGCAAGATCCGGAGAAATCTGGGGAAGCGGGGTAGCATGTGGAGAAGAAGGG
ACGCCAGCTGGGGGATTGCGGAAACGGGGAAAAGGGGAGGTCCCGGGCTACGGTGCGTGCTTGCG
CTGCTACGGCTCTGATTACGTTCATATATTCTGTATCGGGCTCGAGGTACCCCACACACCTGCAT
ACACGCCGTGCATGTGCCAGGGGCTAATGCCGACGGCCGATCAGGCCGTCTTTTTCTCGGCAGGC
ACGTAGACCAAGTCGCGGTAGTTGACCCAGTGGGTGAGCCACCAGTAGGTGAGCTGCGACCACGG
CAACGTGGTGAAGTTGGTCTTGGCGGTGGCGTACCACGACACGCACCCGCCAAACGGGGTGCCAA
ACACACACTCCTTGAGGTCGTGCTGCACCCGGGTCAACCAGCTGTCGTAGGCCTCGGGCTTCACC
TCCACCAGGCGCGCTTTGCCTTCGCGCACCGGCTTCAGCACCTTA
Found at i:262971 original size:12 final size:13
Alignment explanation
Indices: 262942--262979 Score: 69
Period size: 12 Copynumber: 3.0 Consensus size: 13
262932 GAACAATCGC
262942 AGGGATCAATTGT
1 AGGGATCAATTGT
262955 AGGGATCAATT-T
1 AGGGATCAATTGT
262967 AGGGATCAATTGT
1 AGGGATCAATTGT
262980 GGCTGGTGTT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
12 12 0.50
13 12 0.50
ACGTcount: A:0.32, C:0.08, G:0.29, T:0.32
Consensus pattern (13 bp):
AGGGATCAATTGT
Left flanking sequence: Indices 262442 -- 262941
CGGGGTGGCTCTCAAAACGTTCTTTGTCTCGTTCCCGCCGTCATTAGCCTCGTTTAACCGTCCCA
ACGGCCGCGGGCAGGCATGTGAAACCCCGCGTTATGCACGGTTACCCTGCGCCCAAAAGGGTGCT
AATTACGGAAAAGCACGTAAAGAACCTACCCCACAGGGGTATAGCGTCGAAGGGTGGGTGAGTGG
AAAAACGAGCCGGTCTGGGTGGCGAGTGGCGTCTACGGATGCCCATGGCGATGCTACTTTTCGTT
TATTGTTCTATCGTGCCACGAGCATGTGCTCGCGAAACACATGCTGACCAAGGCGGTTGTGGCCT
GAGTTTTTGTCGGACCGCGATGGCGTCCGTTCCGCAGAGGGGAAGCGTCGTAAGATGGGCTTCTT
TGGTAAGGGGCGAGGCTGGGGCAGGCGAGAAGGACCACGATACAAACGTAGTGAAAACGAGTCTA
GTTTACGAACGATGCAACGATCGGAGTGTTGTAGTGAACAATCGC
Right flanking sequence: Indices 262980 -- 263479
GGCTGGTGTTTGCATCAATGTAGCCCCGTGAATGGATGATACTGGTAGTCCAGTGAAAGAGACAT
ATTTCAAACGCTCTTAATTCAATTGGTGAGACAAGCTGGTTCAACCGGTAGTACACGCGATAACA
CACTGATCCAATGATAGATGTCCCATCCTTGGTCGTCAAAATCCGATGCAATTGCCATCAATCTC
TAGTCACGAGTAACCATTTGGAACGCAACCCTGTCTTGGCCAGGCATACAACCTTCACCGACGCT
GTCTGATAGGTTTGTGTCCAGATAAGCGACTGTCTAGTCGACCAGACTTTTTCCTCTACATCGTC
TTGGCCGTCTCGATCAACATCTCCTCGTCGTAGATATCGTCAGCGATGTTGCGGCGCACCCAGAT
GCCCACCATCGTCACCACCGCGCTCACCGCAAACACCACGTCGAACCAGTGGTCGATAAACCGCA
CCTCCTCCATCGCCACCTGCGCCAGCGTGTTGGCCTTGCCCGACA
Found at i:266408 original size:20 final size:20
Alignment explanation
Indices: 266369--266409 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
266359 ACACCACCAC
* *
266369 CACCCCTAAGCCCTCTCCCA
1 CACCCCTAAGCCATCCCCCA
*
266389 CACCCCTTAGCCATCCCCCA
1 CACCCCTAAGCCATCCCCCA
266409 C
1 C
266410 CCACTGTCGG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.20, C:0.61, G:0.05, T:0.15
Consensus pattern (20 bp):
CACCCCTAAGCCATCCCCCA
Left flanking sequence: Indices 265869 -- 266368
AATAGATGTTCAACCGCCTTGGAATATCGAAAGTATTATTTAGTAATTGGTGGATGCTCATGATT
TGTAGTCAAACCGCCAGAGAGTACGAGTCAGAGAGCCAAGGAAGCTACCAAATCAGTCTGCACCA
CTTCATAGCTCAAAGAACCCAAAGCCACCGTACATAACTCCCTACTAGTAAGTCACAGACCCATG
ATTTATCCCGCACGCGACCTTCCCCAGATTTCCGTGGTACCAATCACAACGGGGTCATGGACTGA
GTACCGACATCGAAAGACCATATATTATTTACCCACCAACCTCGTGACACCACCACCCCCTCTTT
TTTCTTCCCTTCCGCATCCCCTCCCACCTTTCCACCACTCACCATTCACTCTGGTCCAGTCGCGA
CCAACCAGGAACAACCACCCCACCAACCCCCGAAATCAAAGAGAAAAAAACACTAATCCACCAAT
AAACACACCCTGCTAAACACAAACACCCCACCCACACACCACCAC
Right flanking sequence: Indices 266410 -- 266909
CCACTGTCGGTCTCCCTCACGTGACCCCCACCATAACACTCAATTTTTCACCTTGGAAGCCAACG
ATGACGATGAAGTTGAGAGCGGAAAAGCGCATGCGCAAGCTCCTCTTGGAGCAAATCAAAGCCCG
CCAGATCGAAGGTGCGCGGGTAGCCGAGGGCAAGAAGTCGCCGGCCGAGCTTCACCGCCTCGGGA
TGGCGCCCCAGGTGTTCATGTGGAAAAACATCTTCCTGGGCCAGGTGTTGTACACCCAGGTGCCT
GCGTTCCACCAGAAGCAGATCAACCAGCAGTTCATCCAGCCCAACTGGCAGAACCGCCGTCCGCT
GCGTCGTAACGACTTGTGGCGGGTGATGGCCGTGGCCACCTTTGACAACTACGACTACGCGGTGG
CCGCGTACCAGGGGCTCGTGGATTTGCGCCGGGCCCGCGACACCGTGCTCAAGAAACAGGCCCAG
GAGATGCGCCGCAAGGACGACGAGGGCAACACCTGGTACCTGGGC
Found at i:273081 original size:18 final size:18
Alignment explanation
Indices: 273045--273116 Score: 67
Period size: 18 Copynumber: 4.1 Consensus size: 18
273035 AACCACAAGA
* * *
273045 TAGACACGGTAGTGCCTG
1 TAGACACGTTGGTACCTG
*
273063 TAGACACGTTGGTAACTG
1 TAGACACGTTGGTACCTG
* *
273081 TAGACTC--TGGTACCTT
1 TAGACACGTTGGTACCTG
*
273097 TAGACAAGTTGGTACCTG
1 TAGACACGTTGGTACCTG
273115 TA
1 TA
273117 CTAGTTAGAC
Statistics
Matches: 42, Mismatches: 10, Indels: 4
0.75 0.18 0.07
Matches are distributed among these distances:
16 12 0.29
18 30 0.71
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.29
Consensus pattern (18 bp):
TAGACACGTTGGTACCTG
Left flanking sequence: Indices 272545 -- 273044
CAGGGGAGGTGGTTTATGGGAACGGATAGTCTGTTTCATTTTTAACTACGCTTTTGACTGTCTGA
GTTTACGTTTTGCAACTTTGGTGTCAGCCTCGAGCACTGTGACACAAACGCAAGATCTTCTTCTG
CCAGCGACCATTGTTTCGAAGCCAAGGAAGATGTCCCTGGCAGCGAACACAGCATGTATTGTTGG
TTGTTCAGGACTAGATGCTAACAGTCAATGCCAAGAAACTATATTTATTGATGGTTTAGCTGGCA
AGCACCTATACAACCAAATCTGCTGATAAATAACAGACCGCCAAGACTGCTACAGATGTTCGATC
AAAAGACAATGGACGATTCATTAGCTGGCTACTGATGTTTTGCTTGGCGTTGTGGTGAAGATGTC
AGTGAGCCAGATGGGTTTTTTGAAGTGATAGGCCAGGGTTGTAGAATTCTAGGGCTCAAACTAGT
AGATGTCCCGTGGTGTTCTCCTCTGAAGCGTCTAGAACCACAAGA
Right flanking sequence: Indices 273117 -- 273616
CTAGTTAGACCCTAGCTACCACCAGCACATAAGTACCAGTAGCCAGTATTCGCCCCACAACTCCC
CCTAAGCACCTCTACACAAACTCTATCATTACTTGTCATTCCTATGCCACGAGCACCATCACCAA
CAACACCACCAACACCACAATCAAGATGGCAATGCACCATGACAGCGCCAGCTCACGGTTTTTCT
CTATAAAATGGTTAATCCGCTTCATCCCACGCTGTAGCTTCAGGTCTACGTTGTCCAAGTCGCGC
TCCAAGTCGTCCAACATAAACCCCTGGTCCTCCAACTCCGACCCCATAAGCTGGGCCTGCTGGTT
GAGATTGCGCATGGTTTGGTGGATCAGATCGAGCTGGGTGTCCTGCTCGTCGATCATCTGCTGCT
GCTGCCAGCTCTGGCCCGGCTGGTTGGCGTCGCTGAACGGGTTTTCGTCGTCGTGGCTGATGCGG
TTGCTCATGGTGGTGACGTCACGGGGCCGGGCGTGGGCCTGTTCC
Found at i:273955 original size:9 final size:9
Alignment explanation
Indices: 273941--273982 Score: 66
Period size: 9 Copynumber: 4.4 Consensus size: 9
273931 AGTGGGGAAG
273941 GGTGGTGAA
1 GGTGGTGAA
273950 GGTGGTGAA
1 GGTGGTGAA
273959 GGTGGTGAA
1 GGTGGTGAA
273968 GGGTGGTGAAA
1 -GGTGGTG-AA
273979 GGTG
1 GGTG
273983 TCCTGGAGAG
Statistics
Matches: 31, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
9 18 0.58
10 11 0.35
11 2 0.06
ACGTcount: A:0.21, C:0.00, G:0.57, T:0.21
Consensus pattern (9 bp):
GGTGGTGAA
Left flanking sequence: Indices 273441 -- 273940
TGAGATTGCGCATGGTTTGGTGGATCAGATCGAGCTGGGTGTCCTGCTCGTCGATCATCTGCTGC
TGCTGCCAGCTCTGGCCCGGCTGGTTGGCGTCGCTGAACGGGTTTTCGTCGTCGTGGCTGATGCG
GTTGCTCATGGTGGTGACGTCACGGGGCCGGGCGTGGGCCTGTTCCCACCGCTTTTTCGTGTCTG
CCATGCGCAGAGAGAGCTCTCGGAGAATCTGGCGGCGCTTGTCCACATCCTCGGCCGTCAACAGG
AACCGGTCCGGTGTTTGGGCCAGGATCTCGAGGGCCTGTTCCAAATCGGTGTAGATCTCCTCGAG
TTCTTGCCAGTTGTTTTTGAACTCGGACGCGAGCGCCCTGGGGTCGATGCTGGTGGTGCGGCGCT
GGTCGATGAGCCCGTCGATCGCCTTGAGCGTCGCCCACGCGTCCTCCTCTACCTCGTTGAAGGGG
TCCATGGTGGGTGGTGACAGCGCGCGAAAAAACTAAGTGGGGAAG
Right flanking sequence: Indices 273983 -- 274482
TCCTGGAGAGCTGGGGATTACTGGGAAATGTTGGGTGAGATGGTGCGTGTTGGTGGCTGTTGTTA
CGTGGCATTTGTTGGTGGTGGCACAAATTTTGGTGGCAATGTCGGGTGGCAATGTCTGGTGGCAA
TTGAAGGTGACTGTTTCCACCAGGCATGTTACATCACGCTTAGGCAGTGTTTACTAACGGTGTCA
ATCGGGACGACCGTGTCAATTGAGCTATCACGTCAACCGAACCATCGTGTCAACGGGAATTACGT
CACTTTTTGTCTTCTCCTCTACACCCACAGTGCGCTCCTGCCAGTCACTGCCTTACAAAACCCCA
ATTATTCTGTCCAACCTTTAGTTTAACTCTATTTCTCTACCGTACCCCTCTTCTTCCTGCACCTC
CGTTACACTTTAACCTACCTTGTCGTATATCGTATCACTCGTTCTTATCGCATTCAACATCCATC
AATGTTTCATTTTTCGCGTACCAACAACCACCATGGACCCCGAAG
Found at i:274097 original size:13 final size:13
Alignment explanation
Indices: 274079--274113 Score: 61
Period size: 13 Copynumber: 2.7 Consensus size: 13
274069 CACAAATTTT
274079 GGTGGCAATGTCG
1 GGTGGCAATGTCG
*
274092 GGTGGCAATGTCT
1 GGTGGCAATGTCG
274105 GGTGGCAAT
1 GGTGGCAAT
274114 TGAAGGTGAC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.17, C:0.14, G:0.43, T:0.26
Consensus pattern (13 bp):
GGTGGCAATGTCG
Left flanking sequence: Indices 273579 -- 274078
TGGTGGTGACGTCACGGGGCCGGGCGTGGGCCTGTTCCCACCGCTTTTTCGTGTCTGCCATGCGC
AGAGAGAGCTCTCGGAGAATCTGGCGGCGCTTGTCCACATCCTCGGCCGTCAACAGGAACCGGTC
CGGTGTTTGGGCCAGGATCTCGAGGGCCTGTTCCAAATCGGTGTAGATCTCCTCGAGTTCTTGCC
AGTTGTTTTTGAACTCGGACGCGAGCGCCCTGGGGTCGATGCTGGTGGTGCGGCGCTGGTCGATG
AGCCCGTCGATCGCCTTGAGCGTCGCCCACGCGTCCTCCTCTACCTCGTTGAAGGGGTCCATGGT
GGGTGGTGACAGCGCGCGAAAAAACTAAGTGGGGAAGGGTGGTGAAGGTGGTGAAGGTGGTGAAG
GGTGGTGAAAGGTGTCCTGGAGAGCTGGGGATTACTGGGAAATGTTGGGTGAGATGGTGCGTGTT
GGTGGCTGTTGTTACGTGGCATTTGTTGGTGGTGGCACAAATTTT
Right flanking sequence: Indices 274114 -- 274613
TGAAGGTGACTGTTTCCACCAGGCATGTTACATCACGCTTAGGCAGTGTTTACTAACGGTGTCAA
TCGGGACGACCGTGTCAATTGAGCTATCACGTCAACCGAACCATCGTGTCAACGGGAATTACGTC
ACTTTTTGTCTTCTCCTCTACACCCACAGTGCGCTCCTGCCAGTCACTGCCTTACAAAACCCCAA
TTATTCTGTCCAACCTTTAGTTTAACTCTATTTCTCTACCGTACCCCTCTTCTTCCTGCACCTCC
GTTACACTTTAACCTACCTTGTCGTATATCGTATCACTCGTTCTTATCGCATTCAACATCCATCA
ATGTTTCATTTTTCGCGTACCAACAACCACCATGGACCCCGAAGCGAACGTAGGTGCGACTCCGG
ACGAGCCCGTGGCGAAACGCGCAAAGGTCGACAAGCCCGCGGGCGAGCCCGTGCACGAGGCCGTG
GGCGGATCCTCTGTGCGCCAGTACCTCAACCAGCACTTGACCCAA
Found at i:275265 original size:11 final size:11
Alignment explanation
Indices: 275251--275283 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
275241 GGAGAGATGT
275251 TGGGAAGGTCA
1 TGGGAAGGTCA
275262 TGGGAAGGTCA
1 TGGGAAGGTCA
*
275273 TGGAAAGGTCA
1 TGGGAAGGTCA
275284 ATTAATGTAG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.30, C:0.09, G:0.42, T:0.18
Consensus pattern (11 bp):
TGGGAAGGTCA
Left flanking sequence: Indices 274751 -- 275250
ACGGGGACACATACGCACCCGTATAAATAGCATCGGGAACGGCTGAAACGCCAGGCGATGAAAAT
AGTGTGCTCACACTGTGGGTGCTCGAAGAAGACCCACGTAATCAACGAGTTCAAGCGCGTCCAGT
GCAAGCTGTGTGGGCTCCAGTGCCCCTGGAACGCCGTGCGCGATCCCCGGTGGTGATACCGGTTC
AGGGGCTAGTGTCAGAATACAATAATTAATACATGTCCACAGGGTTTTGCAAACAGTGCCAGTGC
CACCAGCTGTGGCACGTCCGCAGCCAGCGGTCGGTGGGGGGTTTCTACTTGGTCGGGTGCACTCG
CTGCCACCGGCTTCTCTGTCGGGTGGAAGCTGACGAGCAGCTCATGTAGTGAATACAAAAGCAAA
AGGAGTGACCACGGACGGGACCAGTCCCTGGATGACAGAGTGAGTTATCAAAGAGCGTCAGTTGC
TGATAATGGGTAGACGCATCAGGGGTAGAGATAAGGGAGAGATGT
Right flanking sequence: Indices 275284 -- 275783
ATTAATGTAGTTTACGGGCCGAAACAGACCCTGGTGGGTGTTGGTTGCGGTACTGTGCTTAAATT
TACGAGCCAGGATCGTATTCTCGAGGGAGAGCTTCCTTTGTGGAACCTAACGTTAACGAGGGGCA
AGCTAGGGGTACCAAGAAATTTGTTGGTCACGAGCGGTGACAAAAGTACACCGTTTCAGAATGGA
TAGTAACAGAAAAAGACTCCAAATAGTGCTGTGGTAGTGTCCGGACCACCGGGTATGCGGTGGCA
CCGACCGTGACCTGAACAATCAGTGAGGTGCAAGTGGGCCAAGATGGCGTGATTGTGATGTCACA
GCTCAGCTGACCGGTTCGCGAGTCAGGCTCGCCTACAACGTATGATTTAAGAGGGGTTCTAAAGG
AAGTAGGAAAATACGCCCTATGCGGCTGGTGATCGAGGGGTTGAGCTACTGTGGCTGACCTGGCC
CATATCGATAGGCAGGGCACATAACACGGGATGGTGAAGGTGACG
Found at i:279375 original size:12 final size:12
Alignment explanation
Indices: 279358--279382 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
279348 TTTACATTGA
279358 ACGTTTCACTCG
1 ACGTTTCACTCG
279370 ACGTTTCACTCG
1 ACGTTTCACTCG
279382 A
1 A
279383 ACGATTCTCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.20, C:0.32, G:0.16, T:0.32
Consensus pattern (12 bp):
ACGTTTCACTCG
Left flanking sequence: Indices 278858 -- 279357
CCGAGCAGCAGACCTACCGTGAGCAATTGTTTGGCGAGAAGTTTGTGCCCGAGCAGCACCCCGCC
CACAAGTTGCGGTGGACCAGTGCCCACTCCAAGGCCGAGTTTGACAGCTTGGTCTAGACCGTACA
GCCCTACGATTTCACCTCACATATAACCGAAAATAGACAATAAGCCCATTCGTATTCCTGCCGAG
GCCGCAGCAACGCAGCCACAGCCGCCCGGGGGGGCTTAGGGCAACGCTACACAAGGGCCACACGC
GTGTGAACCGCGTTGTTTGCATGGTGGCCCGCTAGAGAACTACGCGTTGTTCGTATTTTGCCCGC
ACGTAGAGTCTAGACTCGCGTATCGACGTTTGCTTCAACGTTTACTTTAATTATACGCGAACAAA
GGCGCGATCGCCAAGCCAGGCGGCGACCTGTCATTATACACCGCCACGCCTATACGCCAAGTGCG
CCTAGTACGCCCAGTAAACCGTTTCAATGCGACGTTTTACATTGA
Right flanking sequence: Indices 279383 -- 279882
ACGATTCTCACGTTCTCACGTTTCTCACGTTTCTCACGTTTCTCACGTTTCTCACGTTTCTCACG
TTTCTCACGTTTCTCCCGTTTCTCACGTTTCTCACGTTTCTCATGTTTTACCTCACCTTTCTCGT
TTCGTAGAACCACCCCACGGGACTCGGTTCCGGGCCATCCCGTGACCGAATCACCCCATTACGCC
ACCACAAAATAGCCCGCTTAGCGCGCTTAGCCTCCATCGCACGCCATCGCCTGCCCCGTGAACAC
CGCGTGTCTCCTGTCCGCAGCCTCCGTCCCCACCCTCACGGGCCCCACCACTCGCAAAGGTAATT
TTCTACTCGTTCGGGACATCCGGTGCGCAAGCATGCACCGTCGACGGATCAGACGCACCCCTGCA
GTGGTCTGGATTGTGCTCTGGAAGGGCTATTTGTGGCGGTGTTGCCTGACAACTCCGTTTTTGTT
CCCCGTGGGCGTGGTCCCCGCCACCGTGTGTAGGTATTTAGCAGT
Found at i:279409 original size:9 final size:9
Alignment explanation
Indices: 279387--279495 Score: 193
Period size: 9 Copynumber: 12.2 Consensus size: 9
279377 ACTCGAACGA
279387 TTCTCACG-
1 TTCTCACGT
279395 TTCTCACGT
1 TTCTCACGT
279404 TTCTCACGT
1 TTCTCACGT
279413 TTCTCACGT
1 TTCTCACGT
279422 TTCTCACGT
1 TTCTCACGT
279431 TTCTCACGT
1 TTCTCACGT
279440 TTCTCACGT
1 TTCTCACGT
279449 TTCTCACGT
1 TTCTCACGT
*
279458 TTCTCCCGT
1 TTCTCACGT
279467 TTCTCACGT
1 TTCTCACGT
279476 TTCTCACGT
1 TTCTCACGT
*
279485 TTCTCATGT
1 TTCTCACGT
279494 TT
1 TT
279496 TACCTCACCT
Statistics
Matches: 97, Mismatches: 3, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
8 8 0.08
9 89 0.92
ACGTcount: A:0.10, C:0.33, G:0.11, T:0.46
Consensus pattern (9 bp):
TTCTCACGT
Left flanking sequence: Indices 278887 -- 279386
TTTGGCGAGAAGTTTGTGCCCGAGCAGCACCCCGCCCACAAGTTGCGGTGGACCAGTGCCCACTC
CAAGGCCGAGTTTGACAGCTTGGTCTAGACCGTACAGCCCTACGATTTCACCTCACATATAACCG
AAAATAGACAATAAGCCCATTCGTATTCCTGCCGAGGCCGCAGCAACGCAGCCACAGCCGCCCGG
GGGGGCTTAGGGCAACGCTACACAAGGGCCACACGCGTGTGAACCGCGTTGTTTGCATGGTGGCC
CGCTAGAGAACTACGCGTTGTTCGTATTTTGCCCGCACGTAGAGTCTAGACTCGCGTATCGACGT
TTGCTTCAACGTTTACTTTAATTATACGCGAACAAAGGCGCGATCGCCAAGCCAGGCGGCGACCT
GTCATTATACACCGCCACGCCTATACGCCAAGTGCGCCTAGTACGCCCAGTAAACCGTTTCAATG
CGACGTTTTACATTGAACGTTTCACTCGACGTTTCACTCGAACGA
Right flanking sequence: Indices 279496 -- 279995
TACCTCACCTTTCTCGTTTCGTAGAACCACCCCACGGGACTCGGTTCCGGGCCATCCCGTGACCG
AATCACCCCATTACGCCACCACAAAATAGCCCGCTTAGCGCGCTTAGCCTCCATCGCACGCCATC
GCCTGCCCCGTGAACACCGCGTGTCTCCTGTCCGCAGCCTCCGTCCCCACCCTCACGGGCCCCAC
CACTCGCAAAGGTAATTTTCTACTCGTTCGGGACATCCGGTGCGCAAGCATGCACCGTCGACGGA
TCAGACGCACCCCTGCAGTGGTCTGGATTGTGCTCTGGAAGGGCTATTTGTGGCGGTGTTGCCTG
ACAACTCCGTTTTTGTTCCCCGTGGGCGTGGTCCCCGCCACCGTGTGTAGGTATTTAGCAGTAGA
TCGCCAGCTCTTTTGGTTGCACGCCCTGGGCCCGGTCTAGCCCTTCGACGCGTCGGGAGTGCTGC
CTACTGCCGCCATGAAACCGAGCGACATATGTACCATGCACGTGA
Found at i:281882 original size:11 final size:11
Alignment explanation
Indices: 281866--281896 Score: 62
Period size: 11 Copynumber: 2.8 Consensus size: 11
281856 GATTAGCGTT
281866 ATTGCGTGGGA
1 ATTGCGTGGGA
281877 ATTGCGTGGGA
1 ATTGCGTGGGA
281888 ATTGCGTGG
1 ATTGCGTGG
281897 TAAGCCTAGA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.16, C:0.10, G:0.45, T:0.29
Consensus pattern (11 bp):
ATTGCGTGGGA
Left flanking sequence: Indices 281366 -- 281865
GCCCAAGTTCTACGACGACATTGTCGACAACGGGTACCAGGTGGTGCTGGTGGGCCACGAGCACG
AGAACGATGCGTGCATCATGACTGACAACAAGATGTGGATGTGTTTCAACGCCGTGACCGGCGAC
TCGGCCAAGACGACGACGGCGGAGTTTGCCCGGCGGTTGCGGGTGTTTGAGATCGACTTTGAGAA
GGAGCAGATGTTGAGCTGGAAGCGCAAGGAGAACGAGGACAAGCCGTACGACCCGCAGCGGATCG
TGCCGCTCGAGTAGTTATAGATAATGGATGGATGGTAGGAGGGGGTGGTAGGAGGTGGACACTGT
CGTAGGGGTCTATATACGCAGAAGGAGTCTATATATACGGACGTGGGAGTCTATAAGTAGGAGTC
TTGGTTAGAAGTGTGGCTCCACGGTGAGTATGACGACTGAAACTTCGTATTAATGGTCTCTTGGC
ACCTGGCCTGTGCTTTTAATGGTTTATAGTGCTAAGATTAGCGTT
Right flanking sequence: Indices 281897 -- 282396
TAAGCCTAGAGTTCGCTTAGCATTGCCTAGTGCGAGTTGGCTAACAACCGTGCTCAGTAGGTGTC
ACTGTTCAGTCACCTCCGTCTTCTCAGTACCCAGGCTTTGACTCGTCCTACAGTCGGATCGGCAC
AACCGTGACCCGGTACCCCTTCTCGGACAACACGACATCGCTCGACATTGGTCGGTAGCGATCGG
TACGACAACGCAGTCTTTCGAGCCCGAGGAGTGGTGAGACCGGTGAGACCGAGGTGACATCGTGG
TGACGCCGTGGAGACACCGAGGCTTCCGGGGTCATAACCCACGCACAACGCTGTCGCGACATGGA
TGATCTCTGGACGTCTTTTGCGACTCACGCTGTCGAGTCGGTCCCGAACGTGGTCCCCACACCTA
AGCCACAATTTATCACTCGTGTCGGTATTTCACAATTATTCCTGTTCGAGATTGACACCTGCCAC
CTTACTCAAACATTTCCTACTCAAACTTTTTAATCTCTCGTCCCT
Found at i:282455 original size:12 final size:12
Alignment explanation
Indices: 282438--282473 Score: 65
Period size: 12 Copynumber: 3.1 Consensus size: 12
282428 TCTCATTTCT
282438 TTACCCTACCCC
1 TTACCCTACCCC
282450 TTACCCTACCCC
1 TTACCCTACCCC
282462 TTACCC-ACCCC
1 TTACCCTACCCC
282473 T
1 T
282474 CGCTAGGTGG
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
11 6 0.25
12 18 0.75
ACGTcount: A:0.17, C:0.58, G:0.00, T:0.25
Consensus pattern (12 bp):
TTACCCTACCCC
Left flanking sequence: Indices 281938 -- 282437
TAACAACCGTGCTCAGTAGGTGTCACTGTTCAGTCACCTCCGTCTTCTCAGTACCCAGGCTTTGA
CTCGTCCTACAGTCGGATCGGCACAACCGTGACCCGGTACCCCTTCTCGGACAACACGACATCGC
TCGACATTGGTCGGTAGCGATCGGTACGACAACGCAGTCTTTCGAGCCCGAGGAGTGGTGAGACC
GGTGAGACCGAGGTGACATCGTGGTGACGCCGTGGAGACACCGAGGCTTCCGGGGTCATAACCCA
CGCACAACGCTGTCGCGACATGGATGATCTCTGGACGTCTTTTGCGACTCACGCTGTCGAGTCGG
TCCCGAACGTGGTCCCCACACCTAAGCCACAATTTATCACTCGTGTCGGTATTTCACAATTATTC
CTGTTCGAGATTGACACCTGCCACCTTACTCAAACATTTCCTACTCAAACTTTTTAATCTCTCGT
CCCTTCTCCGTTTCCACCCTTTCCTTACCCTTCCTTCTCATTTCT
Right flanking sequence: Indices 282474 -- 282973
CGCTAGGTGGACCCTACCCTCTCTTCTCCACTCCTCTACCCACACAGCAGCCCACACAGCAGCCC
ACACTCCACCAGCCTACCGTTCTTCTATCCTATCTTATTGAATTCGTAACCTATAATACAATCAA
CGCGTCCTTGCCCTTCTTGCCGTCGTGGGCCAAGAACTCGACCTTCTCCTCGGTCAACTGCAACA
CCAACTTCAACCGCTCGCCAATCGTCTTCAACTTTTCGGTGTCGCAGTCCTTGGTCCAAATGCCA
ATCCGAATGCCGCGGTTACGCACGTTCAACACAATGCCGTTGACCTCGCCCTCGTCGTCCTCGAT
GGTCTCACCGATCACCGCAAGCAACCCACGCAACCACAACTCGTTGATGTTCAGGGCGTCCCGCT
TCGAGAACGTGTACTGCCACTTGCCTCCCTGCTCGTTCTCCTTGTCCTCCCACTCGGGACGGATC
CCCTCCTTAAAGAGGTGGTAGTCGGACTTGAGCGGCAACTGGTTG
Found at i:282541 original size:10 final size:12
Alignment explanation
Indices: 282512--282542 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
282502 CACTCCTCTA
282512 CCCACACAGCAG
1 CCCACACAGCAG
282524 CCCACACAGCAG
1 CCCACACAGCAG
282536 CCCACAC
1 CCCACAC
282543 TCCACCAGCC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.32, C:0.55, G:0.13, T:0.00
Consensus pattern (12 bp):
CCCACACAGCAG
Left flanking sequence: Indices 282012 -- 282511
CAGTCGGATCGGCACAACCGTGACCCGGTACCCCTTCTCGGACAACACGACATCGCTCGACATTG
GTCGGTAGCGATCGGTACGACAACGCAGTCTTTCGAGCCCGAGGAGTGGTGAGACCGGTGAGACC
GAGGTGACATCGTGGTGACGCCGTGGAGACACCGAGGCTTCCGGGGTCATAACCCACGCACAACG
CTGTCGCGACATGGATGATCTCTGGACGTCTTTTGCGACTCACGCTGTCGAGTCGGTCCCGAACG
TGGTCCCCACACCTAAGCCACAATTTATCACTCGTGTCGGTATTTCACAATTATTCCTGTTCGAG
ATTGACACCTGCCACCTTACTCAAACATTTCCTACTCAAACTTTTTAATCTCTCGTCCCTTCTCC
GTTTCCACCCTTTCCTTACCCTTCCTTCTCATTTCTTTACCCTACCCCTTACCCTACCCCTTACC
CACCCCTCGCTAGGTGGACCCTACCCTCTCTTCTCCACTCCTCTA
Right flanking sequence: Indices 282543 -- 283042
TCCACCAGCCTACCGTTCTTCTATCCTATCTTATTGAATTCGTAACCTATAATACAATCAACGCG
TCCTTGCCCTTCTTGCCGTCGTGGGCCAAGAACTCGACCTTCTCCTCGGTCAACTGCAACACCAA
CTTCAACCGCTCGCCAATCGTCTTCAACTTTTCGGTGTCGCAGTCCTTGGTCCAAATGCCAATCC
GAATGCCGCGGTTACGCACGTTCAACACAATGCCGTTGACCTCGCCCTCGTCGTCCTCGATGGTC
TCACCGATCACCGCAAGCAACCCACGCAACCACAACTCGTTGATGTTCAGGGCGTCCCGCTTCGA
GAACGTGTACTGCCACTTGCCTCCCTGCTCGTTCTCCTTGTCCTCCCACTCGGGACGGATCCCCT
CCTTAAAGAGGTGGTAGTCGGACTTGAGCGGCAACTGGTTGGCAGGGGGGATCAGGTTGTAGATG
CCCCAGAACTCCTCCACGCTGGCAAAGGTGATCACGGGCTTCAAG
Found at i:283352 original size:11 final size:11
Alignment explanation
Indices: 283336--283360 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
283326 GGTGGTGGGT
283336 GTGGTGAGAGG
1 GTGGTGAGAGG
283347 GTGGTGAGAGG
1 GTGGTGAGAGG
283358 GTG
1 GTG
283361 CGGAGCGGGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.16, C:0.00, G:0.64, T:0.20
Consensus pattern (11 bp):
GTGGTGAGAGG
Left flanking sequence: Indices 282836 -- 283335
AACTCGTTGATGTTCAGGGCGTCCCGCTTCGAGAACGTGTACTGCCACTTGCCTCCCTGCTCGTT
CTCCTTGTCCTCCCACTCGGGACGGATCCCCTCCTTAAAGAGGTGGTAGTCGGACTTGAGCGGCA
ACTGGTTGGCAGGGGGGATCAGGTTGTAGATGCCCCAGAACTCCTCCACGCTGGCAAAGGTGATC
ACGGGCTTCAAGAGGTCGTGCCACGCCTCCAGCTTGTTGACCTGGGGCTTGGTGTACCACAACGT
CCACTTGTTGTTGAGGGGGTGCTTCAGCTTGAAGTCCTCCTTGTTCTCAAACAACGTGTTGCCAG
GCTCGTCCAACTTCAATTGCTCGGTCTGCTTGGTCACTTCGTCGGCACTCATGGTTTGATGCTGT
CTCTACGGAAAATTTTCTTGAAGAGGGAGCGACCACGTGACATCAATGCAGCAGACGGATAATTG
TGGGGGCGGTGGCGGGGGTGGTGGGGTGCCTGGGGGGTGGTGGGT
Right flanking sequence: Indices 283361 -- 283860
CGGAGCGGGTCTAGCCGGCCGTTTAGTCGTGTGGTTGGGTAGTGGTGGTGGTGCTCGGTGGATTG
TTTTGTAGGCTCCGAGCGTTATGCTCGTGCGACACGTATGATCGGAGAAGTGGCCCGTTGACCGA
GGGGCGCGAGCATCGGGTTCCACAGAGCCTCGAGTTTGGTGCTACGCTTCGCTCTGCTCGTGTCG
CTTTCTTTTCTCGTGTTTCAGCCCAACGCGTACCGTGTTTGTGTCGTGCGACACACTGCTGTGTC
TGATGGATCGTATATAACAATAAAGTAGCGCCACACGGTGCAAGGAGTACGATCGGGTGGAGCGG
TGGAGCAGGTGGAGCAGGTGACGCACTCGGTGCTATGAGCCTTGTAACAGTCAATTGTAACTGAG
ATGGCTAGGTGGACATGTTGAGAAAAGACTCCCACTCGTGCTTACACCACCCCACAAGTCACTGT
CCCAACACAAAGTTCAACAAGATCCACCTACCAACAACACCCCAC
Found at i:283698 original size:9 final size:9
Alignment explanation
Indices: 283676--283705 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
283666 AGTACGATCG
283676 GGTGGAGC-
1 GGTGGAGCA
283684 GGTGGAGCA
1 GGTGGAGCA
283693 GGTGGAGCA
1 GGTGGAGCA
283702 GGTG
1 GGTG
283706 ACGCACTCGG
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
8 8 0.38
9 13 0.62
ACGTcount: A:0.17, C:0.10, G:0.60, T:0.13
Consensus pattern (9 bp):
GGTGGAGCA
Left flanking sequence: Indices 283176 -- 283675
ATTGCTCGGTCTGCTTGGTCACTTCGTCGGCACTCATGGTTTGATGCTGTCTCTACGGAAAATTT
TCTTGAAGAGGGAGCGACCACGTGACATCAATGCAGCAGACGGATAATTGTGGGGGCGGTGGCGG
GGGTGGTGGGGTGCCTGGGGGGTGGTGGGTGTGGTGAGAGGGTGGTGAGAGGGTGCGGAGCGGGT
CTAGCCGGCCGTTTAGTCGTGTGGTTGGGTAGTGGTGGTGGTGCTCGGTGGATTGTTTTGTAGGC
TCCGAGCGTTATGCTCGTGCGACACGTATGATCGGAGAAGTGGCCCGTTGACCGAGGGGCGCGAG
CATCGGGTTCCACAGAGCCTCGAGTTTGGTGCTACGCTTCGCTCTGCTCGTGTCGCTTTCTTTTC
TCGTGTTTCAGCCCAACGCGTACCGTGTTTGTGTCGTGCGACACACTGCTGTGTCTGATGGATCG
TATATAACAATAAAGTAGCGCCACACGGTGCAAGGAGTACGATCG
Right flanking sequence: Indices 283706 -- 284205
ACGCACTCGGTGCTATGAGCCTTGTAACAGTCAATTGTAACTGAGATGGCTAGGTGGACATGTTG
AGAAAAGACTCCCACTCGTGCTTACACCACCCCACAAGTCACTGTCCCAACACAAAGTTCAACAA
GATCCACCTACCAACAACACCCCACGACACGACACTGTCAAGCTACCATAAGTCTTCACAGATCA
TCTCGTGTGACACCAACAAATACACTTCACATTCACTTCACATTCACTTCACATAAACCTCACAT
TGAACGCCTCACCATCCACCCCTATTACACCTCGCTGCGTTGCTCTTTTCTCTCCGCAGTGTCTC
TGATCTAGACCGCACAGCAACCATGCAAGCGACGACCGCCATGCGAGCAAAAAGCCTAAACCGCC
TAAAACAACAGTTTCCTCCCCGATACGAGGCGCAGTTGTGAAGTCTCCCTGGCCGCCAATCCTAT
TGTGACGTAGCGGCCCCCGTCGTCAAAAATGGCAATATCTGGCGG
Found at i:283939 original size:11 final size:11
Alignment explanation
Indices: 283923--283954 Score: 64
Period size: 11 Copynumber: 2.9 Consensus size: 11
283913 CCAACAAATA
283923 CACTTCACATT
1 CACTTCACATT
283934 CACTTCACATT
1 CACTTCACATT
283945 CACTTCACAT
1 CACTTCACAT
283955 AAACCTCACA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.28, C:0.38, G:0.00, T:0.34
Consensus pattern (11 bp):
CACTTCACATT
Left flanking sequence: Indices 283423 -- 283922
TTGTTTTGTAGGCTCCGAGCGTTATGCTCGTGCGACACGTATGATCGGAGAAGTGGCCCGTTGAC
CGAGGGGCGCGAGCATCGGGTTCCACAGAGCCTCGAGTTTGGTGCTACGCTTCGCTCTGCTCGTG
TCGCTTTCTTTTCTCGTGTTTCAGCCCAACGCGTACCGTGTTTGTGTCGTGCGACACACTGCTGT
GTCTGATGGATCGTATATAACAATAAAGTAGCGCCACACGGTGCAAGGAGTACGATCGGGTGGAG
CGGTGGAGCAGGTGGAGCAGGTGACGCACTCGGTGCTATGAGCCTTGTAACAGTCAATTGTAACT
GAGATGGCTAGGTGGACATGTTGAGAAAAGACTCCCACTCGTGCTTACACCACCCCACAAGTCAC
TGTCCCAACACAAAGTTCAACAAGATCCACCTACCAACAACACCCCACGACACGACACTGTCAAG
CTACCATAAGTCTTCACAGATCATCTCGTGTGACACCAACAAATA
Right flanking sequence: Indices 283955 -- 284454
AAACCTCACATTGAACGCCTCACCATCCACCCCTATTACACCTCGCTGCGTTGCTCTTTTCTCTC
CGCAGTGTCTCTGATCTAGACCGCACAGCAACCATGCAAGCGACGACCGCCATGCGAGCAAAAAG
CCTAAACCGCCTAAAACAACAGTTTCCTCCCCGATACGAGGCGCAGTTGTGAAGTCTCCCTGGCC
GCCAATCCTATTGTGACGTAGCGGCCCCCGTCGTCAAAAATGGCAATATCTGGCGGAGACATGTT
CGCTTATCGGCAGTTTCTTGTCCCGCCGTGCCAAGACAGCGGTCCGCGAGTACGTCCGCACGCGT
CAAAGCCCCCATCACAACAAACCGGGGTTTCGAGCGGCATGGCAATGGTCGTGGTTTTGCCAAAA
GTAATTAATGTTTTGCATTTACTGCATCTGGCGCGGCTAAACCTTAACCCCTCACTCGGGCCTTC
GTCGGGTACCCCGCATCCACTTTGGACCGTTTCCACTCGCTGTCC
Found at i:283963 original size:22 final size:22
Alignment explanation
Indices: 283923--283966 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
283913 CCAACAAATA
** *
283923 CACTTCACATTCACTTCACATT
1 CACTTCACATAAACCTCACATT
283945 CACTTCACATAAACCTCACATT
1 CACTTCACATAAACCTCACATT
283967 GAACGCCTCA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.32, C:0.36, G:0.00, T:0.32
Consensus pattern (22 bp):
CACTTCACATAAACCTCACATT
Left flanking sequence: Indices 283423 -- 283922
TTGTTTTGTAGGCTCCGAGCGTTATGCTCGTGCGACACGTATGATCGGAGAAGTGGCCCGTTGAC
CGAGGGGCGCGAGCATCGGGTTCCACAGAGCCTCGAGTTTGGTGCTACGCTTCGCTCTGCTCGTG
TCGCTTTCTTTTCTCGTGTTTCAGCCCAACGCGTACCGTGTTTGTGTCGTGCGACACACTGCTGT
GTCTGATGGATCGTATATAACAATAAAGTAGCGCCACACGGTGCAAGGAGTACGATCGGGTGGAG
CGGTGGAGCAGGTGGAGCAGGTGACGCACTCGGTGCTATGAGCCTTGTAACAGTCAATTGTAACT
GAGATGGCTAGGTGGACATGTTGAGAAAAGACTCCCACTCGTGCTTACACCACCCCACAAGTCAC
TGTCCCAACACAAAGTTCAACAAGATCCACCTACCAACAACACCCCACGACACGACACTGTCAAG
CTACCATAAGTCTTCACAGATCATCTCGTGTGACACCAACAAATA
Right flanking sequence: Indices 283967 -- 284466
GAACGCCTCACCATCCACCCCTATTACACCTCGCTGCGTTGCTCTTTTCTCTCCGCAGTGTCTCT
GATCTAGACCGCACAGCAACCATGCAAGCGACGACCGCCATGCGAGCAAAAAGCCTAAACCGCCT
AAAACAACAGTTTCCTCCCCGATACGAGGCGCAGTTGTGAAGTCTCCCTGGCCGCCAATCCTATT
GTGACGTAGCGGCCCCCGTCGTCAAAAATGGCAATATCTGGCGGAGACATGTTCGCTTATCGGCA
GTTTCTTGTCCCGCCGTGCCAAGACAGCGGTCCGCGAGTACGTCCGCACGCGTCAAAGCCCCCAT
CACAACAAACCGGGGTTTCGAGCGGCATGGCAATGGTCGTGGTTTTGCCAAAAGTAATTAATGTT
TTGCATTTACTGCATCTGGCGCGGCTAAACCTTAACCCCTCACTCGGGCCTTCGTCGGGTACCCC
GCATCCACTTTGGACCGTTTCCACTCGCTGTCCGGAGCCAGCGAG
Found at i:285749 original size:21 final size:21
Alignment explanation
Indices: 285721--285796 Score: 143
Period size: 21 Copynumber: 3.6 Consensus size: 21
285711 GGGTCCAGCG
285721 ATGAGGAGTCACCTCTGGAAA
1 ATGAGGAGTCACCTCTGGAAA
*
285742 ACGAGGAGTCACCTCTGGAAA
1 ATGAGGAGTCACCTCTGGAAA
285763 ATGAGGAGTCACCTCTGGAAA
1 ATGAGGAGTCACCTCTGGAAA
285784 ATGAGGAGTCACC
1 ATGAGGAGTCACC
285797 CGACGACGAG
Statistics
Matches: 53, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 53 1.00
ACGTcount: A:0.33, C:0.21, G:0.29, T:0.17
Consensus pattern (21 bp):
ATGAGGAGTCACCTCTGGAAA
Left flanking sequence: Indices 285221 -- 285720
ATTTTTCCTTATTTGATTTTCTCGTCAAACGGCTGCATTCCCAAGTGAAACTGGCCATTGTGCTG
ATCTAAATCGGCGATTTCCCCCTAATTAAGGTTTAAGGCTGTGCAGTCAGGTGCGAACGGTCAGG
TGAGCGTTAGGTGAGACACCGAATAGGAAAAATTGTCATGTGAGTTGCAGCACGTGTGTAGACTC
ACGTGCCATGCGAGATATCTTGCCCGATGAGATGAGCGGCACTATGGCCAAGAAGAGATCGCTTT
TGGAAGAGTTGGCGACTTTAGAGAAGCCCGACGACTTCGACATTGAAGATGTGGACCGCCACGAC
CAAGCCGAGCGTGGGTCTGACCTGGAGCTGGACGAGGAGACGGTGGCCAACGACCACTACGTCAA
GGTTGGCAAGCTGAAGCTCCGCCAGCCGGTGGCCCCGTTGGGTGGCAAGTACACTGGTGCCAAGC
TGAGCCGGCGCGACTTGCAAGACGAGTTCAGTGCCGGGTCCAGCG
Right flanking sequence: Indices 285797 -- 286296
CGACGACGAGTCAATGGACGACGACGCCGCCGGGTCCGACTCGGGGGCGTCATTGCGGGCCAATT
CTGACGACGACGAGCTGGAGAGCGACTCCGACGCCGCGTCCGACGGCGAGCCCGAGGACCTCGAG
TACAAACGCCAGCAGTTGGCGGCCCTCATGGCCCAGGAACGCACCCATTTGGTCAACAAGCTCCT
GGAGACCGCCACTGCCGACGCCCTCAAGGGGTTTGCCGTGCAGCAGCAGCATCAGTTCTTCGACC
GGGTGCTTGACGCGAGACTCAAACTCCAAAAGGCCGTCACCACGGCCAACCAGTTGCCGTACGAC
CAGGCGGCCGCGGAGCTGGTGACCACAAAGAAGACGCCCAAGCACTTGGACCAGGCTCGCGAGCA
GTGCTACGACCTCCTTGACGCGGTGTTTGCCCTCCGCAGCCAGTTGTTGGGGGGTTCCGACGAGG
TTTCCCTCCCCAAAAAGCGGCTGTTTGCCGAGTACAACGCCACCA
Found at i:289311 original size:12 final size:12
Alignment explanation
Indices: 289294--289319 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
289284 GAGAATCCAA
289294 AGAGCCACCACC
1 AGAGCCACCACC
289306 AGAGCCACCACC
1 AGAGCCACCACC
289318 AG
1 AG
289320 CCAAAATGAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.35, C:0.46, G:0.19, T:0.00
Consensus pattern (12 bp):
AGAGCCACCACC
Left flanking sequence: Indices 288794 -- 289293
TCGAGTTCGAATCCGTCAATCTTTCAATTCTATCGTGAGGAACCTCGATTTAGGTTAAGATAATA
GACAGTGTGGCAAGTCCACAGATTATTTAATGAGAAGGAGCTGTCGTTGAGGTTTAGTGCCAATG
ATGTTGGTCTAGAGGTTTCAAGAGTTTTCGCATAACCGAAATGCTTGGTTTCAAGGTCTGAAGCT
AACGAGTCTATCGCTAGGGTTATTAAATGTATTTATAGGTAAATTTGAACCTAACCATGACTTCA
ATTCAAGTGAGTATTGTCCGAAGTAGCGTGAATTATGCAAATTCGACAAAATTCCGGTAACCGAA
AAGCTTTCAGGTCTCACAGGACCATACCCTACCTAGAATCCCAACCCACGTTGCCTAAAATCCCA
CCAATAATCACCAATCCCCCTTCTCTGTGTGGTTGCAAACCCGTTCAATTGCCTAATTGGGACGC
CAAAGGACCATGTAGAACACCAAATCTACCTGATTGAGAATCCAA
Right flanking sequence: Indices 289320 -- 289819
CCAAAATGACCCCTTTCGGATTGCAATGGCACTCCGCAATTCTCCTATATAACCCCCCGTCGTCC
TCTCTATCCTCATCACCACCATGAAGTGCATTTCCATTCTCGCTGCTCTCACTGCCACCGTTGTC
GCTACCGACAACATCGTCAACTCTTACGTCCTCAAGGAGGGCGAGCTCGCCTTCAAGGCCCAAAA
CGAGCAGGGTGAGACCGCGATCGTCGTTGTGGCCGCCTCCGAGGCCGACCAGGTCGACGGCGAAA
ACGTCAAGCGCTGGAGCTGGTTGGACTGGAGAATGTTCGAGCCCATTTGCTAGGCAAACACGACA
ATTGCTGGTGAAATCGACAATTGCTAGGTAAATACGCCAATAAAAATACAAAAGCACCCCCTCGG
GCTCCTACGAAACTCTTTCTATTCATCACATTATCTATACCACAAATCAATTGTGTCTATATGCT
AACCGAGCTAGCCTAGCTAACCGAGCCGTCTACCGCGGCGACCGG
Found at i:289677 original size:19 final size:19
Alignment explanation
Indices: 289626--289677 Score: 61
Period size: 19 Copynumber: 2.7 Consensus size: 19
289616 TCGAGCCCAT
* *
289626 TTGCTAGGCAAACACGACAA
1 TTGCTAGGTAAA-TCGACAA
289646 TTGCT-GGTGAAATCGACAA
1 TTGCTAGGT-AAATCGACAA
289665 TTGCTAGGTAAAT
1 TTGCTAGGTAAAT
289678 ACGCCAATAA
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
19 17 0.61
20 11 0.39
ACGTcount: A:0.35, C:0.17, G:0.23, T:0.25
Consensus pattern (19 bp):
TTGCTAGGTAAATCGACAA
Left flanking sequence: Indices 289126 -- 289625
CAGGTCTCACAGGACCATACCCTACCTAGAATCCCAACCCACGTTGCCTAAAATCCCACCAATAA
TCACCAATCCCCCTTCTCTGTGTGGTTGCAAACCCGTTCAATTGCCTAATTGGGACGCCAAAGGA
CCATGTAGAACACCAAATCTACCTGATTGAGAATCCAAAGAGCCACCACCAGAGCCACCACCAGC
CAAAATGACCCCTTTCGGATTGCAATGGCACTCCGCAATTCTCCTATATAACCCCCCGTCGTCCT
CTCTATCCTCATCACCACCATGAAGTGCATTTCCATTCTCGCTGCTCTCACTGCCACCGTTGTCG
CTACCGACAACATCGTCAACTCTTACGTCCTCAAGGAGGGCGAGCTCGCCTTCAAGGCCCAAAAC
GAGCAGGGTGAGACCGCGATCGTCGTTGTGGCCGCCTCCGAGGCCGACCAGGTCGACGGCGAAAA
CGTCAAGCGCTGGAGCTGGTTGGACTGGAGAATGTTCGAGCCCAT
Right flanking sequence: Indices 289678 -- 290177
ACGCCAATAAAAATACAAAAGCACCCCCTCGGGCTCCTACGAAACTCTTTCTATTCATCACATTA
TCTATACCACAAATCAATTGTGTCTATATGCTAACCGAGCTAGCCTAGCTAACCGAGCCGTCTAC
CGCGGCGACCGGTTGGCGTTGTTCAACATCCGCTCACGCAACCGCGAGCCCGTGGCAGAGTAGGT
GTTGGTGCGCGTCGGGTTCCCCGTCTGGTAGCCCGCCCCCGGGATCAGCTGTTGTCTCAGCTTGT
TGTACAAGTTGTCCAACCGGCTCGGGTTGCGGGAGTACCCGGGCCGGTCGGGCAGCGGGGTCTGG
TTCTGCGGGGTGTACCCCATGTTGGGCGTGCGTGGCAGAGCGGGTTGGTCGCGGTTCCACAGCTG
TCTCGGGGTGTAGGTGGCGCCACCCAGGGGCTCGCTCGTATTCGCCCGAACGGGCTGGAACTGCG
AGTACACGTGCTGGTCGCGAGCGGGGGCGACGCCGTCCTGCTTGA
Found at i:290660 original size:17 final size:17
Alignment explanation
Indices: 290637--290686 Score: 73
Period size: 17 Copynumber: 2.9 Consensus size: 17
290627 GGTAAGCTGT
*
290637 AGGAGAAAGCGAGGGAA
1 AGGAGAAAGCAAGGGAA
* *
290654 TGGAGAAAACAAGGGAA
1 AGGAGAAAGCAAGGGAA
290671 AGGAGAAAGCAAGGGA
1 AGGAGAAAGCAAGGGA
290687 CTGGGAAGAG
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
17 28 1.00
ACGTcount: A:0.50, C:0.06, G:0.42, T:0.02
Consensus pattern (17 bp):
AGGAGAAAGCAAGGGAA
Left flanking sequence: Indices 290137 -- 290636
CACGTGCTGGTCGCGAGCGGGGGCGACGCCGTCCTGCTTGACCCCGAGCCACTCCGGGTACGGCT
GTTGCAAGGTGTCAAAGTACTTGACGAAGGCGTTGTGGATGAGGGTGTCGTCGTCGGTGGCTCCG
TCCTTTTCCGGCGGGTGGGAGATATTTAGGTTGGAGAACTTGGCGTGGTAGTTGTCCCGCATGCG
GGAGAAGAACCCCAGGGTCGAGTTGTTGGCCTCGTTCATGGTGGGGTGGGTGGCAAGGTGGGAAG
GTGGGTGGAAGGTGGGGTGTGGTTGACGATCGCACTGTTGCTAAAATAGGCAACAGCCGCACAGG
AGGGGAAGATGTGGGGAAGAGACGACGAAGCAGGGGTTCAAAGAGTGTTTAAGAGTGTATACGTT
GTCACGTGGGTTCGGTTTAGGTTGAATTCGGGCATTAGGGGGCTATCTGTGTGGTGGCGATAGAC
GACGCATGTGTCCAGATCGGGAAGCATAAGTGGTGGGTAAGCTGT
Right flanking sequence: Indices 290687 -- 291186
CTGGGAAGAGCAAAGACGCGGTAAAGAATGTAATACGCCTATTGGGAACGGAAAGTTCTGGAAGT
GAAATTAGAACCAGTTGTCTCTACCAAAGAGTTAGACAATTTGCATGGAGACAGATCGGATGATT
CGATGTCGCTTCTGATGCTCTAGAACATATCCCCTCAGTCACTGGACTCACTGGTAACTAACATT
AAAGTCACCTCCACATACTTCCCTCTGCATCAGGTGACCGTCGACTGATTGGTGATTTTGCCACC
GCTTCAGAGTGTTTCTTCTACAGCTTCTTCTACAGCTTCTTCTAAACGTTCTTCTACACGTCAAA
CGGTACCAGCGCGTCTGTTCGAGACAACAATGTGACATGTCTCACCTGTATCTATTCCCTCGCAT
TCAAAACAGACCACCGTTAGAATACACCGGTAAGCCTGTGTTAACCCAACCCACGAAAACCATAC
ACACACACATACACACACACATACACCCACCACACAAACCATCCT
Found at i:291007 original size:12 final size:12
Alignment explanation
Indices: 290959--291004 Score: 67
Period size: 12 Copynumber: 3.8 Consensus size: 12
290949 TTCAGAGTGT
290959 TTCTTCTACAGC
1 TTCTTCTACAGC
290971 TTCTTCTACAGC
1 TTCTTCTACAGC
*
290983 TTCTTCTA-AAC
1 TTCTTCTACAGC
290994 GTTCTTCTACA
1 -TTCTTCTACA
291005 CGTCAAACGG
Statistics
Matches: 31, Mismatches: 1, Indels: 3
0.89 0.03 0.09
Matches are distributed among these distances:
11 2 0.06
12 28 0.90
13 1 0.03
ACGTcount: A:0.20, C:0.30, G:0.07, T:0.43
Consensus pattern (12 bp):
TTCTTCTACAGC
Left flanking sequence: Indices 290459 -- 290958
AGGAGGGGAAGATGTGGGGAAGAGACGACGAAGCAGGGGTTCAAAGAGTGTTTAAGAGTGTATAC
GTTGTCACGTGGGTTCGGTTTAGGTTGAATTCGGGCATTAGGGGGCTATCTGTGTGGTGGCGATA
GACGACGCATGTGTCCAGATCGGGAAGCATAAGTGGTGGGTAAGCTGTAGGAGAAAGCGAGGGAA
TGGAGAAAACAAGGGAAAGGAGAAAGCAAGGGACTGGGAAGAGCAAAGACGCGGTAAAGAATGTA
ATACGCCTATTGGGAACGGAAAGTTCTGGAAGTGAAATTAGAACCAGTTGTCTCTACCAAAGAGT
TAGACAATTTGCATGGAGACAGATCGGATGATTCGATGTCGCTTCTGATGCTCTAGAACATATCC
CCTCAGTCACTGGACTCACTGGTAACTAACATTAAAGTCACCTCCACATACTTCCCTCTGCATCA
GGTGACCGTCGACTGATTGGTGATTTTGCCACCGCTTCAGAGTGT
Right flanking sequence: Indices 291005 -- 291504
CGTCAAACGGTACCAGCGCGTCTGTTCGAGACAACAATGTGACATGTCTCACCTGTATCTATTCC
CTCGCATTCAAAACAGACCACCGTTAGAATACACCGGTAAGCCTGTGTTAACCCAACCCACGAAA
ACCATACACACACACATACACACACACATACACCCACCACACAAACCATCCTCCTTTCTCTCCTT
TCCCTCCTTTCCCCTTTCCCCTTTTCCTTCACTCCATTTATTTTTTCATCTCCACCGTCTCATCC
CGTCTCATCTCATTTTTCATCTCATCTGCACCATCTCCACTATGTTTCTCCGACGGTTTTCCACG
CTGGTGAGGCGACTCATCGCCGTGGGCGACCTACCCATCTCCCCTCTCTTGAAAAAGAGTATGGA
GAAGCTGAAATTTACCACGCTCACCCCCGTCCAGGAGAAGACCGTGGGCCCTGCGTTGACCGAGA
ACGGGTTGGTGGTGCGGGCCAAGACCGGTACGGGCAAGACCCTCG
Found at i:291154 original size:12 final size:12
Alignment explanation
Indices: 291137--291167 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
291127 CCACGAAAAC
291137 CATACACACACA
1 CATACACACACA
291149 CATACACACACA
1 CATACACACACA
291161 CATACAC
1 CATACAC
291168 CCACCACACA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.48, C:0.42, G:0.00, T:0.10
Consensus pattern (12 bp):
CATACACACACA
Left flanking sequence: Indices 290637 -- 291136
AGGAGAAAGCGAGGGAATGGAGAAAACAAGGGAAAGGAGAAAGCAAGGGACTGGGAAGAGCAAAG
ACGCGGTAAAGAATGTAATACGCCTATTGGGAACGGAAAGTTCTGGAAGTGAAATTAGAACCAGT
TGTCTCTACCAAAGAGTTAGACAATTTGCATGGAGACAGATCGGATGATTCGATGTCGCTTCTGA
TGCTCTAGAACATATCCCCTCAGTCACTGGACTCACTGGTAACTAACATTAAAGTCACCTCCACA
TACTTCCCTCTGCATCAGGTGACCGTCGACTGATTGGTGATTTTGCCACCGCTTCAGAGTGTTTC
TTCTACAGCTTCTTCTACAGCTTCTTCTAAACGTTCTTCTACACGTCAAACGGTACCAGCGCGTC
TGTTCGAGACAACAATGTGACATGTCTCACCTGTATCTATTCCCTCGCATTCAAAACAGACCACC
GTTAGAATACACCGGTAAGCCTGTGTTAACCCAACCCACGAAAAC
Right flanking sequence: Indices 291168 -- 291667
CCACCACACAAACCATCCTCCTTTCTCTCCTTTCCCTCCTTTCCCCTTTCCCCTTTTCCTTCACT
CCATTTATTTTTTCATCTCCACCGTCTCATCCCGTCTCATCTCATTTTTCATCTCATCTGCACCA
TCTCCACTATGTTTCTCCGACGGTTTTCCACGCTGGTGAGGCGACTCATCGCCGTGGGCGACCTA
CCCATCTCCCCTCTCTTGAAAAAGAGTATGGAGAAGCTGAAATTTACCACGCTCACCCCCGTCCA
GGAGAAGACCGTGGGCCCTGCGTTGACCGAGAACGGGTTGGTGGTGCGGGCCAAGACCGGTACGG
GCAAGACCCTCGCGTTTGTGTTGCCCACCCTCCAGGCCATCCTTGACAACCGGGTGCGTGGGTCG
GTTTCCACCCTCGTGGTGGCCCCCACCCGTGACTTGGCCCTCCAGATCGATGACGAGTACCACAA
GATCATCTCCAAGTTGCCGCCGCTGGCCCGGGTGCGCACCGCGTT
Found at i:291207 original size:18 final size:16
Alignment explanation
Indices: 291184--291219 Score: 54
Period size: 18 Copynumber: 2.1 Consensus size: 16
291174 CACAAACCAT
291184 CCTCCTTTCTCTCCTTTC
1 CCTCCTTTC-C-CCTTTC
291202 CCTCCTTTCCCCTTTC
1 CCTCCTTTCCCCTTTC
291218 CC
1 CC
291220 CTTTTCCTTC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 8 0.44
17 1 0.06
18 9 0.50
ACGTcount: A:0.00, C:0.56, G:0.00, T:0.44
Consensus pattern (16 bp):
CCTCCTTTCCCCTTTC
Left flanking sequence: Indices 290684 -- 291183
GGACTGGGAAGAGCAAAGACGCGGTAAAGAATGTAATACGCCTATTGGGAACGGAAAGTTCTGGA
AGTGAAATTAGAACCAGTTGTCTCTACCAAAGAGTTAGACAATTTGCATGGAGACAGATCGGATG
ATTCGATGTCGCTTCTGATGCTCTAGAACATATCCCCTCAGTCACTGGACTCACTGGTAACTAAC
ATTAAAGTCACCTCCACATACTTCCCTCTGCATCAGGTGACCGTCGACTGATTGGTGATTTTGCC
ACCGCTTCAGAGTGTTTCTTCTACAGCTTCTTCTACAGCTTCTTCTAAACGTTCTTCTACACGTC
AAACGGTACCAGCGCGTCTGTTCGAGACAACAATGTGACATGTCTCACCTGTATCTATTCCCTCG
CATTCAAAACAGACCACCGTTAGAATACACCGGTAAGCCTGTGTTAACCCAACCCACGAAAACCA
TACACACACACATACACACACACATACACCCACCACACAAACCAT
Right flanking sequence: Indices 291220 -- 291719
CTTTTCCTTCACTCCATTTATTTTTTCATCTCCACCGTCTCATCCCGTCTCATCTCATTTTTCAT
CTCATCTGCACCATCTCCACTATGTTTCTCCGACGGTTTTCCACGCTGGTGAGGCGACTCATCGC
CGTGGGCGACCTACCCATCTCCCCTCTCTTGAAAAAGAGTATGGAGAAGCTGAAATTTACCACGC
TCACCCCCGTCCAGGAGAAGACCGTGGGCCCTGCGTTGACCGAGAACGGGTTGGTGGTGCGGGCC
AAGACCGGTACGGGCAAGACCCTCGCGTTTGTGTTGCCCACCCTCCAGGCCATCCTTGACAACCG
GGTGCGTGGGTCGGTTTCCACCCTCGTGGTGGCCCCCACCCGTGACTTGGCCCTCCAGATCGATG
ACGAGTACCACAAGATCATCTCCAAGTTGCCGCCGCTGGCCCGGGTGCGCACCGCGTTGATCATG
GGCGGCAAGCCCGGGTTCTTTGACCCCTACAACCCGCCGGACGTG
Found at i:293062 original size:18 final size:18
Alignment explanation
Indices: 292950--293059 Score: 111
Period size: 18 Copynumber: 6.3 Consensus size: 18
292940 GGGCTACCAG
* *
292950 AAGCGCGAGTACGAGGGG
1 AAGCGCGAGTACCAGGGC
*
292968 AAGCGGGAGTACCAGGGC
1 AAGCGCGAGTACCAGGGC
*
292986 AAGCGCGAGTTCCAGGGC
1 AAGCGCGAGTACCAGGGC
293004 AAGCGCGAGTACCAGGGC
1 AAGCGCGAGTACCAGGGC
* * *
293022 GACCGTG-GATACCA--G-
1 AAGCGCGAG-TACCAGGGC
*
293037 AAGCGTGAGTACCAGGGC
1 AAGCGCGAGTACCAGGGC
293055 AAGCG
1 AAGCG
293060 TGACGGCTGG
Statistics
Matches: 76, Mismatches: 11, Indels: 10
0.78 0.11 0.10
Matches are distributed among these distances:
15 10 0.13
16 2 0.03
17 2 0.03
18 62 0.82
ACGTcount: A:0.27, C:0.24, G:0.41, T:0.08
Consensus pattern (18 bp):
AAGCGCGAGTACCAGGGC
Left flanking sequence: Indices 292450 -- 292949
AGGGCGAGCTCAAGTACCGCCGGTCTCTCTTTATGGACCGCGGTATCGAGTTCAGCGACGAATTG
ACCTCGGATGCGTTTGCCAAGCCCGACAACTTGTGGCTGCAAATTGCCCCGCCCGAGACCGAGAC
CAACGAGTTTTTCAGCCCGTTTTTGTCGTACCAGAAGCAGATGTCGACCAAGCACAAGTTGAACC
ACCGCAAGCTGGTGGTGGAGGCGATGGAGTTCTACCGCGCGGTGGTGGGCGACCCCGAGCGCCGG
TTGCTGGTGAGCTCCAACGTGTACTACCTGTACATTGGGCTTCCTCGCGATGAGGCCGTCAATTA
TTTCCTCATTAGTGGGCGGGAGATCGGGATGGACCGCAACAACACCAGCAAGAAGCAGAAGCGCA
CGACGTTCGACGGGTACCGTGGCTCCAGCCGGCGGCCCGAGCGGTTCGAGAACAAGGGGATGGGC
AACTCGAACCGGTGGAACGCGATGAGAGACACCCGGGGCTACCAG
Right flanking sequence: Indices 293060 -- 293559
TGACGGCTGGGACCGTGACGGGTACTAGAGATCTTGTAAATAGCTGTATATAGACTGACATAGAC
TCATGATAGACTAGGTTTAATGGGACATTGGATAGGAATGAGGGGTGGTAGGGGATGTGGTAGGG
GGACGTGGTAGGCGAATGTTTGGATATGGAGGTGGGTATGTAAGCTCAGGAGAAGGCCGGAACGG
CCACTGGGGTTGGAAGGGATCTGAGGCCAGTATAGGCATTTGCTTATTTTGGCTATCTGGGCGTG
TTCTGTGTGTTTCACGCCCGTTTGAGAGACCAAAAACTTGCGGGTGGCTTTTGGTGCTGTCACCA
ACACCTACGAAACGCCTAGCCTAGCTGTAATGCCTCTCTACGGGGCTTTCCATTTGCAACTGGTC
GGCTTATCAGTAACTACCTGTATGCAGTACACCAGGGTCACCACTTTGGCTCGGTATTGAACCAC
CACCAACAGAGGTGAAAAATAGCTGGAGATATGCCCATCACCCCT
Found at i:293197 original size:13 final size:13
Alignment explanation
Indices: 293169--293201 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
293159 GGAATGAGGG
*
293169 GTGGTA-GGGGAT
1 GTGGTAGGGGGAC
293181 GTGGTAGGGGGAC
1 GTGGTAGGGGGAC
293194 GTGGTAGG
1 GTGGTAGG
293202 CGAATGTTTG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 6 0.32
13 13 0.68
ACGTcount: A:0.15, C:0.03, G:0.61, T:0.21
Consensus pattern (13 bp):
GTGGTAGGGGGAC
Left flanking sequence: Indices 292669 -- 293168
TGGAGTTCTACCGCGCGGTGGTGGGCGACCCCGAGCGCCGGTTGCTGGTGAGCTCCAACGTGTAC
TACCTGTACATTGGGCTTCCTCGCGATGAGGCCGTCAATTATTTCCTCATTAGTGGGCGGGAGAT
CGGGATGGACCGCAACAACACCAGCAAGAAGCAGAAGCGCACGACGTTCGACGGGTACCGTGGCT
CCAGCCGGCGGCCCGAGCGGTTCGAGAACAAGGGGATGGGCAACTCGAACCGGTGGAACGCGATG
AGAGACACCCGGGGCTACCAGAAGCGCGAGTACGAGGGGAAGCGGGAGTACCAGGGCAAGCGCGA
GTTCCAGGGCAAGCGCGAGTACCAGGGCGACCGTGGATACCAGAAGCGTGAGTACCAGGGCAAGC
GTGACGGCTGGGACCGTGACGGGTACTAGAGATCTTGTAAATAGCTGTATATAGACTGACATAGA
CTCATGATAGACTAGGTTTAATGGGACATTGGATAGGAATGAGGG
Right flanking sequence: Indices 293202 -- 293701
CGAATGTTTGGATATGGAGGTGGGTATGTAAGCTCAGGAGAAGGCCGGAACGGCCACTGGGGTTG
GAAGGGATCTGAGGCCAGTATAGGCATTTGCTTATTTTGGCTATCTGGGCGTGTTCTGTGTGTTT
CACGCCCGTTTGAGAGACCAAAAACTTGCGGGTGGCTTTTGGTGCTGTCACCAACACCTACGAAA
CGCCTAGCCTAGCTGTAATGCCTCTCTACGGGGCTTTCCATTTGCAACTGGTCGGCTTATCAGTA
ACTACCTGTATGCAGTACACCAGGGTCACCACTTTGGCTCGGTATTGAACCACCACCAACAGAGG
TGAAAAATAGCTGGAGATATGCCCATCACCCCTGGATAGCCACCGAAACCACTCCCTACCTTGTC
CCATCCCGTAAAACACGCTTTCTTGTTGCAACCGCTCACACCGTCTACATGCAGTATATCACCAC
CGCCACCAGGACACGGTGGCTCCACACCACCAAAAGCCCGAAAAG
Found at i:294023 original size:12 final size:12
Alignment explanation
Indices: 294008--294033 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
293998 CACCACCATG
294008 CCCACCCCACCA
1 CCCACCCCACCA
294020 CCCACCCCACCA
1 CCCACCCCACCA
294032 CC
1 CC
294034 AGACGTCCTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.23, C:0.77, G:0.00, T:0.00
Consensus pattern (12 bp):
CCCACCCCACCA
Left flanking sequence: Indices 293508 -- 294007
GAACCACCACCAACAGAGGTGAAAAATAGCTGGAGATATGCCCATCACCCCTGGATAGCCACCGA
AACCACTCCCTACCTTGTCCCATCCCGTAAAACACGCTTTCTTGTTGCAACCGCTCACACCGTCT
ACATGCAGTATATCACCACCGCCACCAGGACACGGTGGCTCCACACCACCAAAAGCCCGAAAAGA
GGGCTGAAACATCCACCAACCCTCTCCCACACCCCACTCGACCTGTCCCACCCACCCCTTTTCAC
CCCATTCCCGCCCCACCACCACCACGCCCTTCGCACGGGCCACGGTAACCACATCCGGACGGTCC
CCGAAACCACCAGGTAACCCACGTAACCCACTAAATCCCAGACCAGCCACCCCCCGCCTACCACC
GCTACCCCACCCACACCACCCTCAGCCCCACACCCGCCCCGGTCGTCCCAGCCACCGGTGCTTCG
TCCCACGCCAAGCCTTCGCACGCATTTCTCGTAACCACCACCATG
Right flanking sequence: Indices 294034 -- 294533
AGACGTCCTCTTCACCCGCGAAGACTCACCCACAGCAGAGGGCTCGTCGCACGACGTCCCCCCAC
CACCTACCACCCGCGACCGGCTCATCGGAGCCTTCCACCAGTGGGTCCCGGTCCGCACCACCTAC
GAACGCCTCCACAACGGCCTCGCCACAGGCCGGATGCAGCTGAACCGGCCCGGACGGTTCATTGG
CCTGGGCACCGACGGCGTGTTCCGCAACCTCCTGGCCAAGCCCGAGCTGGAGGACGACCGCCACC
GCGAGCTCCACCCCCCCACCTACGAGGAGGCGGCTGCGGACGCCCTGCCCGAGTACTGGGAGCTG
ACGGTGATCAGTCCCATCTACGACGACGAGGTGTTTGTCGAGGGCTTGCCCGTGGGCAACATCGC
CAACCTCGTGTGGAACGTGTTGGTGGCGGTGGCCTTCCAGTTCGTGGGGTTTGTGTTGTGCTACC
TCTTGCACACGCTGCACGCGGCCAAACAGGGGGCCCGGGCCGGGC
Found at i:295001 original size:10 final size:10
Alignment explanation
Indices: 294971--295028 Score: 75
Period size: 10 Copynumber: 6.0 Consensus size: 10
294961 AGGTCGAGTG
294971 CCAGAGGAGA
1 CCAGAGGAGA
*
294981 CCAGA--ACA
1 CCAGAGGAGA
294989 CCAGAGGAGA
1 CCAGAGGAGA
* *
294999 CCAAAGGAAA
1 CCAGAGGAGA
295009 CCAGAGGAGA
1 CCAGAGGAGA
295019 CCAGAGGAGA
1 CCAGAGGAGA
295029 TCGGTTACGT
Statistics
Matches: 40, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
8 7 0.17
10 33 0.82
ACGTcount: A:0.45, C:0.22, G:0.33, T:0.00
Consensus pattern (10 bp):
CCAGAGGAGA
Left flanking sequence: Indices 294471 -- 294970
GGTTTGTGTTGTGCTACCTCTTGCACACGCTGCACGCGGCCAAACAGGGGGCCCGGGCCGGGCTC
GGGGTGACGTTTGTGATCTTTGGCTACAAGAGAATCCCCGCGAACCGCGGGCTGGCGGAGACGTT
GCCCGAGCGGCTCTGGGCCGCAGACCCGTGGAGGACGGAGCTGCTAGGCAAGGGGACGAGGCTCG
ACGGGGTGTTGGACGAGTACGTGTCGCAGATGCCGCGGGGGAAGATTCCTGCGGCGCTGGTGGCC
ACCACGCCGTACTTGGCGTACGGGATCATCGCCTTTGGCATCCTCGTGATTGTTAAGGCGTTGTT
CGACTACTACAGGGTCAAGGTGACCGAGCGGCAGATCTTGGCGCCGCTGCTGACGGCACAGACCA
CGCTGACGGTGACGGAGATCACCGATAATGCTAATTTAGACTAGGGAATGGACAACGGACTGAGA
GGTGTAGTGGGGGTGGGGGAGTAGTGGGTGGGAATAGGTCGAGTG
Right flanking sequence: Indices 295029 -- 295528
TCGGTTACGTGGCTGGCAGATTTGGAACGCGCTTGTTTGCGTGTTACTGAATCAATACAACCTGC
TTGCGTTAGTAAAGCCCAGTTGTACCACAGGCCAGCTTATTGTACAACAGAAAAAGTAATTAGAG
TGTGGGTGAAGACAAGGCGTTGGATAAAAGGCTAGGAATAGAGCTAGTGTGGATTGGGAATGGGT
ATTGAAGCTATCGAAAGTTCGATCTGGTTCAAGCTGGGGCGAAAGCTAGAGGTGGATTAAAGCCA
GACCGGACTGAGATAGAAAAGGTGCAGCGTGGACTGATGGGTACACTCGCACATTTCAAACATTC
TGTTACGTCGTTTCTTCCCCACCTATTTATTTCCACTGTTGTACGGCCTCTTTAGGGCTGGTTAA
CTACTTACCCACGGCCTCGATCTCTCTAATGTCCGTCTCGTCGGTGAACCGAGCAGGAGCCAACG
AGATCGTATTCTCTTCCCAGTCAAACACCGCGTACACGTTCTGAA
Found at i:300126 original size:35 final size:35
Alignment explanation
Indices: 300077--300171 Score: 129
Period size: 34 Copynumber: 2.7 Consensus size: 35
300067 CCATTCCTCT
*
300077 CTATTTTGGCTGCAAAAGCACCTTCCATATTTCTCC
1 CTATTTTGGCTGCAAAAG-ACCTTCCATATTTCCCC
*
300113 CT-TTTTGGCTGCAAAAGACCTCCCATATTTCCCC
1 CTATTTTGGCTGCAAAAGACCTTCCATATTTCCCC
*
300147 CTACCTTTGGCTGCAAAAGTACCTT
1 CTA-TTTTGGCTGCAAAAG-ACCTT
300172 TAATGCTAAT
Statistics
Matches: 52, Mismatches: 4, Indels: 5
0.85 0.07 0.08
Matches are distributed among these distances:
34 17 0.33
35 15 0.29
36 16 0.31
37 4 0.08
ACGTcount: A:0.22, C:0.32, G:0.13, T:0.34
Consensus pattern (35 bp):
CTATTTTGGCTGCAAAAGACCTTCCATATTTCCCC
Left flanking sequence: Indices 299577 -- 300076
AGGCCTACGCTGGTTCCTCTCACCTGTTGAGTCTTGCTTCAACAAAGACTTGAGCGCTAGACCAA
AATTGCGCCAAACTTTATTGCATTGTGACTACCCCGTGCTACTACCGTCGTGAAACCAGCCGTCT
GAGAAGTTTTAGGTTGATTTCCCGGGTTTTCTCCATCAGCGGCAACGGACTTCACTTCGGTGTTG
GGGTGGGAGTGCATATAGATACATTTCTTTGTGGTTGCCTAATGGGTCACGCTAGGTAAGTGGAA
CCAGCTTAAACCGGCCTAACTCAACCCAAGAAGTTTCCTGACGCTGCTGCCGAGCTGAAAAAAAT
TTCGGGAAAACAGGGCCCGTGTAAACCTCTGTTTGTTTGGAATACGTCACGTGATCTGAGGTCAC
CTGACACTAACAAAATGAATTTAACTGCCACACAATCCAAAGGAACCGTGAACTGTCGATTCGTT
AGCTGTTTATATATCAATTAGCTTTGCTTAGCTCACCATTCCTCT
Right flanking sequence: Indices 300172 -- 300671
TAATGCTAATTTATTACTTATGTGTTCCTATTATCTGGAACTGACCCAGTCCATATGGCAGTAAT
CATCCAAATCCCTACAAATCGTCAAACTCGTCCTCGTCGTCGTCATCATCATCGTCGGCCTCCTG
CTGCTCACGCTCCGCCAACTGCGCATAGTACGCGGCCAACGCGTCCTGGGCCTCCTTGTCCTTGA
TCTGCGACGTCAGCTGCTGGGGCACCGCCTCCTCCTTGACCTCCACGTCCTCGCCAAACGGCTTC
TTCTCCTCCTCGTCCGACGTGAACTTGCCGAGCGTCTCCTGGCCCACCGTCAGCGCCAGGTGCCA
CAGCGGCAACGCGTTCTGCTCCAACTTGAGCCTGCGCTCCTCCTTTTCTTCCTGCTCGCGCTCCA
AGTCCTTGTCGTTGGCGGTGATCGACACCTGGAGCGTGGCCTGGGCCCGGGAAGCGTCCGCGGCC
ATCTGAGACGCCGCGTGCTTGCGCGGGCGGCCCAAACTGGCGGTG
Found at i:301901 original size:10 final size:9
Alignment explanation
Indices: 301886--301928 Score: 50
Period size: 10 Copynumber: 4.3 Consensus size: 9
301876 AATAGGAAAT
301886 AAGGTTTGAA
1 AAGG-TTGAA
301896 AAGGTTGAAA
1 AAGGTTG-AA
301906 AAGGTTGAAAA
1 AAGGTTG--AA
301917 AAGGTTGAA
1 AAGGTTGAA
301926 AAG
1 AAG
301929 AAGGTTGAAA
Statistics
Matches: 31, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
9 8 0.26
10 13 0.42
11 10 0.32
ACGTcount: A:0.49, C:0.00, G:0.30, T:0.21
Consensus pattern (9 bp):
AAGGTTGAA
Left flanking sequence: Indices 301386 -- 301885
AGTAGGGGAGAAGGAAGATGGAAGAAATGAGAAAGGGAAGGGAAAAAGGAAAAAGGATAAAAGAA
AAAGAGAAGTAGGAAGAGGGCTCACGAAGATACGGTAATAGTGGAGGGTGATGTGTGAAGGAATG
ATGTTTGTTGGAATCGGTGGGAATTGGTGGGATCATTGTCGTAGTCGTCAAATTTAACCATTTGA
ATTCGAGTCGATAGTGATGGGGTAGAGTTAAAGAAGAGCGTTGTGTGATGCTTTATCACGCTTTT
CTTATGGCTGGGTGCGTCTCTATATGTAGTTGTAGTGGTTCAGTTGTAGTGGTCCTTTGCAGTCC
CCTTTAGGCAACTGCCAGTCATGTATCCAGATTAGTCGTTGGCAATAATCCACATGTAATGCAGG
GCCAAGCATTCCACGACTTTACGGTGGCCCGGTGTAGACAAATTGGCTCGGTCGATGGGATCTAG
CGAGTCTATTTTGCAGATTGACGACTAACCGATCGAATAGGAAAT
Right flanking sequence: Indices 301929 -- 302428
AAGGTTGAAAAGTCACAAGCAAGAGTCGGCTAAAAGAGTACGCAGTGCTTCATGTATTACGAGGC
CACCACACTGTCATCATTTCTGCTCGTAAACTGTAGTGTTTTAAGTTGACCATGGCTCAAGTGGG
CATTGTTGTTCAAGCCACCATAGAACGTCGAGCGACCACGAATACAAGCATGGATACGTCTGAGA
AGGAGAGCTGATCCCATGGATATCCCTAGAAGTCGCTTAAAGGGGCCACTATACTCACCACTGAA
AATCCCCACCCACCCTGACAACTCTCACCTGTTCTGAGCAACTGCTCCAAGCATCCACCGTAGCC
CACCAACTAAGCGGTGGGGAGGTCTGGAGGGGCGCCGCCTGCGGCCCCTCCAGCTGTCACTAGCG
TTTCCAGCGGTCACCTGCCCTCCCACTACGTTACTACCATCCAACCACCGTAGTTTCCCCTCTAC
CGTCCCCACCACGACATTAACAAAGGTTGTGTATAGAGACCAAGG
Found at i:301918 original size:21 final size:23
Alignment explanation
Indices: 301894--301939 Score: 78
Period size: 23 Copynumber: 2.1 Consensus size: 23
301884 ATAAGGTTTG
301894 AAAAGGTTG-AAA-AAGGTTGAA
1 AAAAGGTTGAAAAGAAGGTTGAA
301915 AAAAGGTTGAAAAGAAGGTTGAA
1 AAAAGGTTGAAAAGAAGGTTGAA
301938 AA
1 AA
301940 GTCACAAGCA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
21 9 0.39
22 3 0.13
23 11 0.48
ACGTcount: A:0.54, C:0.00, G:0.28, T:0.17
Consensus pattern (23 bp):
AAAAGGTTGAAAAGAAGGTTGAA
Left flanking sequence: Indices 301394 -- 301893
AGAAGGAAGATGGAAGAAATGAGAAAGGGAAGGGAAAAAGGAAAAAGGATAAAAGAAAAAGAGAA
GTAGGAAGAGGGCTCACGAAGATACGGTAATAGTGGAGGGTGATGTGTGAAGGAATGATGTTTGT
TGGAATCGGTGGGAATTGGTGGGATCATTGTCGTAGTCGTCAAATTTAACCATTTGAATTCGAGT
CGATAGTGATGGGGTAGAGTTAAAGAAGAGCGTTGTGTGATGCTTTATCACGCTTTTCTTATGGC
TGGGTGCGTCTCTATATGTAGTTGTAGTGGTTCAGTTGTAGTGGTCCTTTGCAGTCCCCTTTAGG
CAACTGCCAGTCATGTATCCAGATTAGTCGTTGGCAATAATCCACATGTAATGCAGGGCCAAGCA
TTCCACGACTTTACGGTGGCCCGGTGTAGACAAATTGGCTCGGTCGATGGGATCTAGCGAGTCTA
TTTTGCAGATTGACGACTAACCGATCGAATAGGAAATAAGGTTTG
Right flanking sequence: Indices 301940 -- 302439
GTCACAAGCAAGAGTCGGCTAAAAGAGTACGCAGTGCTTCATGTATTACGAGGCCACCACACTGT
CATCATTTCTGCTCGTAAACTGTAGTGTTTTAAGTTGACCATGGCTCAAGTGGGCATTGTTGTTC
AAGCCACCATAGAACGTCGAGCGACCACGAATACAAGCATGGATACGTCTGAGAAGGAGAGCTGA
TCCCATGGATATCCCTAGAAGTCGCTTAAAGGGGCCACTATACTCACCACTGAAAATCCCCACCC
ACCCTGACAACTCTCACCTGTTCTGAGCAACTGCTCCAAGCATCCACCGTAGCCCACCAACTAAG
CGGTGGGGAGGTCTGGAGGGGCGCCGCCTGCGGCCCCTCCAGCTGTCACTAGCGTTTCCAGCGGT
CACCTGCCCTCCCACTACGTTACTACCATCCAACCACCGTAGTTTCCCCTCTACCGTCCCCACCA
CGACATTAACAAAGGTTGTGTATAGAGACCAAGGCGTACCCACCA
Found at i:301940 original size:12 final size:11
Alignment explanation
Indices: 301894--301939 Score: 76
Period size: 11 Copynumber: 4.2 Consensus size: 11
301884 ATAAGGTTTG
301894 AAAAGGTTG-A
1 AAAAGGTTGAA
301904 AAAAGGTTGAA
1 AAAAGGTTGAA
301915 AAAAGGTTGAA
1 AAAAGGTTGAA
301926 AAGAAGGTTGAA
1 AA-AAGGTTGAA
301938 AA
1 AA
301940 GTCACAAGCA
Statistics
Matches: 34, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
10 9 0.26
11 14 0.41
12 11 0.32
ACGTcount: A:0.54, C:0.00, G:0.28, T:0.17
Consensus pattern (11 bp):
AAAAGGTTGAA
Left flanking sequence: Indices 301394 -- 301893
AGAAGGAAGATGGAAGAAATGAGAAAGGGAAGGGAAAAAGGAAAAAGGATAAAAGAAAAAGAGAA
GTAGGAAGAGGGCTCACGAAGATACGGTAATAGTGGAGGGTGATGTGTGAAGGAATGATGTTTGT
TGGAATCGGTGGGAATTGGTGGGATCATTGTCGTAGTCGTCAAATTTAACCATTTGAATTCGAGT
CGATAGTGATGGGGTAGAGTTAAAGAAGAGCGTTGTGTGATGCTTTATCACGCTTTTCTTATGGC
TGGGTGCGTCTCTATATGTAGTTGTAGTGGTTCAGTTGTAGTGGTCCTTTGCAGTCCCCTTTAGG
CAACTGCCAGTCATGTATCCAGATTAGTCGTTGGCAATAATCCACATGTAATGCAGGGCCAAGCA
TTCCACGACTTTACGGTGGCCCGGTGTAGACAAATTGGCTCGGTCGATGGGATCTAGCGAGTCTA
TTTTGCAGATTGACGACTAACCGATCGAATAGGAAATAAGGTTTG
Right flanking sequence: Indices 301940 -- 302439
GTCACAAGCAAGAGTCGGCTAAAAGAGTACGCAGTGCTTCATGTATTACGAGGCCACCACACTGT
CATCATTTCTGCTCGTAAACTGTAGTGTTTTAAGTTGACCATGGCTCAAGTGGGCATTGTTGTTC
AAGCCACCATAGAACGTCGAGCGACCACGAATACAAGCATGGATACGTCTGAGAAGGAGAGCTGA
TCCCATGGATATCCCTAGAAGTCGCTTAAAGGGGCCACTATACTCACCACTGAAAATCCCCACCC
ACCCTGACAACTCTCACCTGTTCTGAGCAACTGCTCCAAGCATCCACCGTAGCCCACCAACTAAG
CGGTGGGGAGGTCTGGAGGGGCGCCGCCTGCGGCCCCTCCAGCTGTCACTAGCGTTTCCAGCGGT
CACCTGCCCTCCCACTACGTTACTACCATCCAACCACCGTAGTTTCCCCTCTACCGTCCCCACCA
CGACATTAACAAAGGTTGTGTATAGAGACCAAGGCGTACCCACCA
Done.