Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: scaffold75
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 153494
ACGTcount: A:0.23, C:0.27, G:0.27, T:0.23
Found at i:6960 original size:9 final size:9
Alignment explanation
Indices: 6946--6971 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
6936 GGGAACCACG
6946 AAACAACGC
1 AAACAACGC
6955 AAACAACGC
1 AAACAACGC
6964 AAACAACG
1 AAACAACG
6972 AAAGCCAAGA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.58, C:0.31, G:0.12, T:0.00
Consensus pattern (9 bp):
AAACAACGC
Left flanking sequence: Indices 6446 -- 6945
GACTTGCCAGCTGACGTGTTTACGGGTTTTCCCCACAAGTGAAAATTTTGCACGGGTCATTCGGT
GACAGATTTTGTTCTCGAAGTCACTAGCTATGCACGGTGAAAAAATAACGGAAAAGAAAGGTGCA
TATATTCGTGGGGAGAGGCGGTGGTCGGCAGATAACCATTGGCCAACGCCCACGGTTTCCGTTGC
GTTTGCAGCCAGCATCGGATGCAGCATATTTGGAGAGCAACCTAGCGACAAGCGAGCGATCAACA
GTCGAACCCCGAGACGCCGAGGGGCTTATGCCACACACGCGTAGAAGCGTTTTTTCTGGCGATTG
CATGCTAACAATAGAACCCCACGATAGTCACGAGCCAGTGTGACTCTCTCATTCGCCACTGCGAA
CGAGTCGTACCAGACAATGTTTCACATCAAACGATTGACGCAAAAGACGCAACGGCACTGGGCAA
CTGAACCGTAGTAGGCAACTGAACACGAACGCAAGGGGAACCACG
Right flanking sequence: Indices 6972 -- 7471
AAAGCCAAGAAAGCCGTGAGCCATGCAGTTGAGTAATAAGTTTTCTAACGCGGTCTTTTTGCACC
TCAGCTCGTTGTGAGCCACTTTCGTCCATCCTCCTAATCCACCTGACCATACCCTAGGTCTCCCC
ACCTCGTTCCTCAGTGTCCACCATATCCGTTGTGATTTCACGTGACCTGCGCGGTTAGGCACATT
CCAGGGGCACCTACCACGCGACCAACCCAACCATGAGCAAGATCGAGGAGCAGCCTAAGCCTGCG
GGCTCGTTGTTGCTTGCGTTCCAGGTCAAACACAAACACTGTCTTGTTATTGGCTCCGGCAACGT
CGCTCTCTCGCGCATCGAGCACTTGATCCGGGCCGAAGCGTTGATCACCGTGATCGCGGGTCCCC
CCGGTGGAAACGTATGTCCCGAAATTAGGGCCTACGCGGAGTCGGGCAAGGTGTACAAGTTCATC
GAGCGTGACTACGAGCCGTCCGACTTGACGATGTACGAAAACGTC
Found at i:27937 original size:42 final size:42
Alignment explanation
Indices: 27875--27980 Score: 151
Period size: 42 Copynumber: 2.5 Consensus size: 42
27865 CTTCGCTCTC
27875 AACTAGACGAGAAGACTGAGCTTTTAGGCAAGACACAGACGG
1 AACTAGACGAGAAGACTGAGCTTTTAGGCAAGACACAGACGG
* * *
27917 AACTAGACGAGAAGATTGAGCTTTTAGGCAAGGCACAGTCGG
1 AACTAGACGAGAAGACTGAGCTTTTAGGCAAGACACAGACGG
* *
27959 AACTTGAGGAGAAGGAC-GAGCT
1 AACTAGACGAGAA-GACTGAGCT
27981 CATCAAGAAG
Statistics
Matches: 57, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
42 55 0.96
43 2 0.04
ACGTcount: A:0.36, C:0.17, G:0.31, T:0.16
Consensus pattern (42 bp):
AACTAGACGAGAAGACTGAGCTTTTAGGCAAGACACAGACGG
Left flanking sequence: Indices 27375 -- 27874
CAAACCGTTAGCGGAGAAAGCGTCCACGGCCACACCTCCACCGAAGTCGGACGAGATTGATCTTG
ACGCGTTGTCACCAGTGGTGCGGTCGAAGATGAAGAAGTTCTACAAGTACGAGGAAAAGTATCCC
GTTTTACTCAACGCTTTCAAGATTGAAAAGCAAAAGGGGGAGTTGGTGGCGGCATTTGAAAAGAT
TTTGCGGGAGCACACACCAGTGCTGTCAATTGCCGATGTCGGGTTGCTAATGCAGTACTTGGAGG
GCCTTACCACAAAGACCACCATGCTCAACGCCGAGCTTCGCAAAGTGACCTCAGCTAAGGGCGAG
GCCGAGAAGCTGGCGAAGTCTGCCGATGCGGAGGTCGCCAAGTTGAAGCAGGAGGTGGAGTCAGT
GAAGCAGTCCAAGCTAGACCTCAAGAAAGAGTTGGAAGGACGTCTCTCGCAGCTTGAAGAAGCTG
GTGACTCCGACACACTTTCAGAGGAGATGCAGCAGCTTCGCTCTC
Right flanking sequence: Indices 27981 -- 28480
CATCAAGAAGCAAGAGTCCGAATTGGCGGAGCGACCACCTGCATCGAGCGATGATGGGAAGCTCG
CCGAGCTCGAAGTGGAGCACAAGAAGCTTCGTGAGGAGCACGATAAACTTCTGGAAGAGCACACC
AAGCTCCTGCAGGAGCATGCAAAGGCGAAGGAGGAGCACGAACAGGCACTTCAACTGCTCAAGAA
CGAGCACGACACCTCTGTCGACCAGCTCAAACTGGAACACTCCTCCAAGTTGGACCTGGTGGCAG
GAGACCACTCCAAAACGGTGGAGCTGCTTAAGGAAGACCACACAAAAGCTGTCGACATGCTCAAA
CAGGACCACTCCCAGGCAGTGGAGCTGCTCAAGCAGACCCACACGACCGCCTTGGATGACCTTGA
AATTAAGAACAAGGAGGCGGCTGCAGCCAAGGACGCCGAATGGCAGAAGAAGGTGGACGCTGCCG
AGTCGAAGCATCAGAAGCTCGAAGAACAACAGAAAAAGGCCACTG
Found at i:31716 original size:27 final size:27
Alignment explanation
Indices: 31686--31741 Score: 103
Period size: 27 Copynumber: 2.1 Consensus size: 27
31676 TACCATGTCT
31686 GCTGAAGAAGCGAAGCAACAAGCGCCC
1 GCTGAAGAAGCGAAGCAACAAGCGCCC
*
31713 GCTGAAGAAGTGAAGCAACAAGCGCCC
1 GCTGAAGAAGCGAAGCAACAAGCGCCC
31740 GC
1 GC
31742 CACTACCGAG
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.36, C:0.29, G:0.30, T:0.05
Consensus pattern (27 bp):
GCTGAAGAAGCGAAGCAACAAGCGCCC
Left flanking sequence: Indices 31186 -- 31685
GCTCGACATTCCCGTGGGCTACTTGGAAGGTGAAACATTGGTGTGCTTTGTCACCCCTGAGTACT
TGCGCTTGGCCACAAAGTTGAGCGAGGACCGTTTCACCGAGAACTTCAAAAAGATGCGGGCGATT
GAGACCGCAATTAAGAGCATGGAGGTTAAGGAAGAGAAAAAGGTGGAGACTAAGGAGGAGCGTCG
GGAACGCAAGCGAGCCGAGGGATTAGCCCGCCAGGCCGCCAAACAACAAACATAGATCATTGGTT
CTTAATCTGCCACTTGGTGAATTAACTCCTAGAGAAGAGTATTTCACTAGCAAAGTACCCTAATA
GATAATAACGAATACCACTCAACATCCATGACTCATCGAGGCAAACATCATGCTGTTCCACCTCG
ACCGGGTGTGTCCCGGAGTTGGGTGATTAATCTTGCATACTAGCGCTACCACCCGATCCCTCGCA
ATGACTAATTTTTCAGCCCACCAAAAAGCTCCAGATACCATGTCT
Right flanking sequence: Indices 31742 -- 32241
CACTACCGAGGGTGCCCCCGCCGGCGAAGTCATTCTTGGCGAGGACGGCCAGCCGTTGTCTAAGA
AGGCGTTGAAGAAGTTGGAGAAGGAACGCGAAAAGCAGAGAAAGAAGGCGGAGAGAGAGGCCGAG
CTTGCCAAGGAGAAGGCTGCCAAGGAGGCCGCCGCTGCCAATGACCCGGCCAAGGCCAACTACGG
CAAGTTGCCCTTGAACAACTCGTCGTCGCAGACCAACGAGCCCCGGGCCCAGCTCGCCGACATTT
CCGCCGCCAACGACGGCGACAAGGTGTTGGTGCGTGCTCGTGTGCACAAGACCAGACAACAGGGT
GCCACCATGTTGTTCTTGACCCTCAGACAGCAGTCCAACCTGATCCAGGCGTTGTTGAAGGTGAA
CAAGGACACCGACTCGTCGGCGGTGTCGAAGCAGATGGTCAAGTGGGCCGGCTCCATCACTCCCG
AGTCGATTGTGTTGGTCAGAGGTACCATCAAGAAGGTCGAGGAGC
Found at i:50750 original size:16 final size:16
Alignment explanation
Indices: 50729--50771 Score: 59
Period size: 16 Copynumber: 2.7 Consensus size: 16
50719 ATTATAACGT
50729 TGGCTGCTCCCATCAC
1 TGGCTGCTCCCATCAC
* *
50745 TGGCTGCTCCAATCAT
1 TGGCTGCTCCCATCAC
*
50761 TAGCTGCTCCC
1 TGGCTGCTCCC
50772 CTGCTGGATC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.14, C:0.40, G:0.19, T:0.28
Consensus pattern (16 bp):
TGGCTGCTCCCATCAC
Left flanking sequence: Indices 50229 -- 50728
GAGTAGCCGGGCCAGGGTTTTAAGCGTTCTAGTGGCGGTTCTAGCAAACATGGTTGGGTTTTCCG
TCCGCGGCAATTGATTAATGAGTCTTTTTGTGGGGTCACGTGAAGCAAGAAATCAGTGGTCGGTG
GTGATGAGGTGGCGATGCGTAGTAGAGGGTGGGTGAGAGGGTAATTGGGTGTTTGGGGTTTGTTG
GCGGGCTGGGGACAGCGGTTTGTGGGGTGCCTGACCCGGTGTGTGGGGTACTCCCTTCTGCCGCT
GACCTGGCATATTCCATGCATGGACGTCGAGGCAAGTGGGCGGTGGCAATTGCGGAAGCGCCAGC
GATCGGAAGTAGGGCTATAGAAAAGGAGACCGAAAACAGTGATCGTAGACGACACTGACCAACGC
TAGTTAGTTCGAATGGTCTTTCACACCTGGTTCGCTATCCCCTAATGTACGGCGATCCACATCTG
AGCCACAGTTAAGTGGTGACCATGGTGCTTCAGAGATTATAACGT
Right flanking sequence: Indices 50772 -- 51271
CTGCTGGATCACGACTAACACTCCTATATAACTTAATAGCTTACTTACCTCCTAAGCACGATTAC
ACCCACCTCGATTAGGAATAAAACATGCATGCCTCCCTCCAGCCCATAACACCAATCAGGTAGTG
TAATGAGCCGTCAAACGTGGAGACATGTCAGACACTAACGCCTCACACGGTCTCCGTGTCGCCCC
CCACCACAAACCTTGCTTACTGCACCCCCAAGCGGCAGACACGGCTAGCACCGCGGGCCATCCCT
GCCATTTCATCCGTGCGTGTCTCTGCCGTGCATCCCCTCTCTCGTTCGCGCTCCATCTCCATCCC
TGCCAATGCACCACTGGAGGCAGAATGACACCATAGGCCACCGCTGCATCACCGATGCCGTAGCC
CATATTTATACCAAAACAGGCAACAGCGACCACCCTCGCCCACGGCACCGTTTCATCGCCCGCCA
CATGGTTAGCACCTCTGTTTTGCCTCGACGCGTCCCGTTTTCATC
Found at i:67130 original size:21 final size:21
Alignment explanation
Indices: 67106--67146 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
67096 GTCCTCGTCG
* *
67106 GAGGCGTCTTCGGAGGCTTCT
1 GAGGAGTCGTCGGAGGCTTCT
67127 GAGGAGTCGTCGGAGGCTTC
1 GAGGAGTCGTCGGAGGCTTC
67147 GTCCAAGACC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.12, C:0.22, G:0.41, T:0.24
Consensus pattern (21 bp):
GAGGAGTCGTCGGAGGCTTCT
Left flanking sequence: Indices 66606 -- 67105
TTGACTTTTCGGGCACCAAGATTGACTTCCCCCTCAAGGATTTGCTCATCCCCTACGACGGCAAG
TGCTTCCTCGGTATTTTCGAGCAGGACACTGATTTCATCACCATTGGCGACAACATGTTGCGCCA
CGCATACTGGGTGTACGACTACGACAACTTCGAGGTGTCGGTGGCCCAGACCAAGTTCACTTCCG
ACACCGACGTCGAGGAAGTTGACTCGCCCGAGGTGCCGGGCGCCTCCACTGCTGAGCACTACAGC
AGCACGTCGTTGCTGTCCAACTCCGAAGGGTCGGCTTCGTCCACCATCACCCCGACGCAGGCCAA
GGCTGTCAAGACCGACGACTCTGAGCTGTCAGAGTCCGGGTCGGAGGAGGACACCACCATGACCC
GCACCAAGACGGTTCTCGTCACTTCTGACGACGATGCCTCGGCCACCTCTGACGAGCAATCGGAG
ACCTCCGAGTCTGTGTCCGAGACTGGGGCTCTGGAGTCCTCGTCG
Right flanking sequence: Indices 67147 -- 67646
GTCCAAGACCACCAAGTCTTCTGCCTCCAAGTCTGCGGCCAAGACCACCAAGTCGGAGGAAAAGT
CGCAGCCCAAGGAAACCGATGCTGCCACCACCATGGTTAGCGCCGAGCAGTCGGCGCTGGCGGCC
GGTGACCACACCCCCTCCACTCAACAAAAAGCCATGGCCGCCTCCGTAGGCGTGCCTTCGCTCTT
AATGCTCCTTCTTCTCATTTAGATTCGTCATATAGAATTAATACCACGGACATTCTGGACCACCG
GGGCTTTGCGATTGTGTCAGATTTTGACTATTTATAGACAAAACCCATTTTGCCATACGAAAAGC
ATTGTGGCGGTGTCTATCGTCTATACTTGATTGCCGCTATTACTTCCCTCTCCTTGGGTTGGGCT
GTGTTTCCACCTCCTGACCTGTTCGCCTTGCACGCCTCATGTTATTTTATACTCCATAGCTAGCA
TCAAATTATGTCTCTATCTGCTGACTTACCCGATGCCGTGACCTC
Found at i:75324 original size:17 final size:17
Alignment explanation
Indices: 75297--75357 Score: 95
Period size: 17 Copynumber: 3.6 Consensus size: 17
75287 AAGCCACACC
*
75297 CATCTACGCTCTGTGTT
1 CATCCACGCTCTGTGTT
*
75314 CCTCCACGCTCTGTGTT
1 CATCCACGCTCTGTGTT
75331 CATCCACGCTCTGTGTT
1 CATCCACGCTCTGTGTT
*
75348 CATCTACGCT
1 CATCCACGCT
75358 GTTCTTCCAT
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
17 40 1.00
ACGTcount: A:0.11, C:0.36, G:0.16, T:0.36
Consensus pattern (17 bp):
CATCCACGCTCTGTGTT
Left flanking sequence: Indices 74797 -- 75296
GGCAGAGCCGCTCTCCTTACCCGCGATCGACTCGCCAACGTACTTGGCAGCGTCCTCGAGCTTGT
TCTCGACGGTGTCGACGGCGTCAGCCAACTTCTCCCCGATAGTCTGCTTCTCGCCGTGGTGGTCG
GGGTGACCGCCGTGGTGGTGGGGCTTGGAGTCGTCGACGGCGTTGATGGCCGTGTGGGTGACGCG
GTTGCGGGACTCGGCTTCGTGTTCGTAAGCGTTGGCAGACATGTTGACGAGAGATTTTTACTTGC
TCCCAAACGCCGTATACGGCTACAGTGGAGTGGCCGGCATAGTGCGGAAAAATGTCGCCAACTCC
GGAGTGGCGAATGCAAGGAATAGGATGGGTAAAAAAGAGAGGTTGGCTAAGAAAAAGAGGGATAA
CATCTAAGCGATGATGTCTTCAGTAGGATTTCTAATTGTGATATAGACGCCTAGTCCATATCATC
GGTGTCCTAAATAAATCTTCATTTTCGACCCACGAAAGCCACACC
Right flanking sequence: Indices 75358 -- 75857
GTTCTTCCATGCTTCAATAAATTATATGCACTAATCTTCGTCCTCCGAGGCAATGGCCTCGTCGG
AAATGACAAACTTGGCGAGGCACTTGACCACCGCCGCGTCGTCCACCGGCTTGGGCATCACGTAG
TCAAACACCCCCAGCGCTGCCGCCTCGTCCGGGTGGATGGTCACCGCGACAATCGGCGTCTGCGA
GTTGACCCCCGTAGTAAACTTGATGAGCTTGGTGGCATCCACCGCCCCCACCTTGGCGAGCCTCA
TACAGGTGAGAATCAAATCAAACTTGACCTGGCCCGTCGCCCGGCGAATCAACTCGTCGCCGTCG
GCCACGCCCACTACAACACACCCTTGGCGCTCGAGAAGCTTGGTGGTGGCCACCCGCACACTGGC
GGCGGGCTCGCAGTACAACACGTCGAACCCCTGGCCACTGAACGAGCCCTGTTCGAACGACGGCC
GCGCCAACCCGTCAAACGAGCCCGGACGCGAGTCGGTGGCCGGTC
Found at i:77336 original size:21 final size:21
Alignment explanation
Indices: 77312--77351 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
77302 GGACGGGAGC
77312 GACGAGGTGGTGGA-CACCGCG
1 GACGAGGTGG-GGAGCACCGCG
*
77333 GACGCGGTGGGGAGCACCG
1 GACGAGGTGGGGAGCACCG
77352 AGCTGGTGGA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 3 0.18
21 14 0.82
ACGTcount: A:0.17, C:0.25, G:0.50, T:0.07
Consensus pattern (21 bp):
GACGAGGTGGGGAGCACCGCG
Left flanking sequence: Indices 76812 -- 77311
GGGCGTCGGGATCGGCCACAAGCAACTGGCTGATCAAGTCCTTCGCCTCGGGCGGGCAGTAGTCG
AGCTCGGCCTCCACCTCGGGCCCGGGCCAGTCGATCTCGCCCTTGCAGATGTTCTGGAGCACCTG
GTCCGCCGTCTGGGCGTGGAACGGCGGGTACCCGTAGATGAACTCAAAGAGAATGCACCCCACCA
GCCACCAGTCCAGCGACGCCAGCTGGCCCTCGCCCAAGATGGTTTCCGGCGAGAGGTAGTCGGGA
GTGCCGACAAACTTTTTCGACTGCTGGGGTGTCAGTTTCAGCGGGTCAAACAACGTGTACAGCGC
GGGCGCGGGCTGGGCCGGCATGGGCGACATGGTGAACTCGTCGTCGACGATGTGGAACGACATCT
CCAGGTTGGTGCGCGGGAACACCGGGGTGGCGGGCGCGAGCTGGCTCTGGGGGGTCGACGACGGG
AGCGCCGAGTTGGCCAAGGCCGAGCTGGGCGCGCCGGACGGGAGC
Right flanking sequence: Indices 77352 -- 77851
AGCTGGTGGAGCCGCCCAGGCCCAGCGTGCCCAGCGAGCCCAGCCGGGCCAATGCCATTGCCTCG
GGCTTACAGGGGTCGGGTTTGAGCCCGAGGCCCGGGATGAACTGGGTGGCGGGCACGGTGAGCGA
GTTGGAGGCGAGCGACGGGGTGGAGCTGGGTAGTGAGGGGGCACTGGAGCCGGACTGGACAACGT
GGCTGCTGCCACCATGGCCACTAGGCCCACCAGAGTTGCTGTGGCCAGTGTGACCGGACGTGGAC
CCAGACAGGACACCGTGACCACTGAGACTGGACGACCCAGATTGGCCACTGTGGCCACTAAGACC
GGAAGTGGACCCAGACTGACCACCATGGCCACTGGGACCACTTCCAGAGCCAGTATGGCCACTAA
CAGGGCCACCCTGACCACCATGGCCACTCTGCCCACTGCCTCCCGCTCCCATGATCCCTAACGCT
CCCACATCGCTCTCACCGGGAGTCCCAGCACTCGAGCCCAGCGCC
Found at i:79335 original size:27 final size:27
Alignment explanation
Indices: 79304--79365 Score: 79
Period size: 27 Copynumber: 2.3 Consensus size: 27
79294 AGGGTGTGCT
* * * *
79304 CCACTCGCGCCTACACCACTTGCTGAA
1 CCACTCGCACCCAAACCACTCGCTGAA
*
79331 CCACTCACACCCAAACCACTCGCTGAA
1 CCACTCGCACCCAAACCACTCGCTGAA
79358 CCACTCGC
1 CCACTCGC
79366 TGAACCACTC
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.26, C:0.48, G:0.11, T:0.15
Consensus pattern (27 bp):
CCACTCGCACCCAAACCACTCGCTGAA
Left flanking sequence: Indices 78804 -- 79303
GTGGCACGGCCCGCTGCAACAGCGAGAGGTTCTGCTTCTCGACGTAGGGCGCTGGCAGCAAGTGG
CGTCGCGGCAGCGCCAGCTTCGGCGGCATGTCCTCGAACTGGTCGAGCAACCCGCGGGTCAGGAG
CTCGGGCTTGCGGAGGATGTCGTTGGGGGTCACCAGCTTGGTGTAGCCAAACTCGCCAAAGAGGT
TGGTGGGCGAGCGGGTCCGCAGCGGCTGTGGCAGGTGGAGCGGGTGCTCGCCCGGGTCGGGCATC
AAGTACGAGAGCGGTGGTGGCGGCAGGTGCGAGCCGGGCGATGCTTTGGCTGCGCTGAGCCGCGA
GAGCGACAGCAGCGACGAGTGGCGCGACGAGGTGGCGCGGATGGTGCCTGGGCTGCCCGCGGTGC
CCGTGGAACGGGAAAACTCACCACCTCGAAAGTCACCACTGCCTCGCGGCGAGTGGGACGAGGCT
CCAGGAACAGTGGAAACGCCAGAGCCGATGGCAATAGGGTGTGCT
Right flanking sequence: Indices 79366 -- 79865
TGAACCACTCGCACCAGCTGCCCACTCCAGGTTCGACCGCGGCGTGGACGTGCCCAGCGGGCGTG
GCGGCGTCGCCCGGTGCTCAAAGTCAAGCGGCAACAGCAGCTGCGAGAGCGTCAGCGAGTGGTGC
GGCTCGTACTTGCCCTTGAGGTCCGCCAGCGGGCGGTGGCCCAGCAACAGCCGGGCGAGCGGCGG
CAGCTGCAGGTCGCCGGCCCGTGTCACCAGCGGACTGCGCAAGAGCGACAGCCGGATGCTCGAGC
GGGGACTCACGTCGCCCGAGTCGGCGGTCTTGACCGGCGGGCGGGTCTGCGAGTTGGTGCGCGAG
CGGGACAGCCGCGAGCCCGAGTTTGTGCGGGGCCTGGCGTCAAGCGGTCGCGGTGGCGGGCGGAT
GGGCTCGGACGCCTCGGAGTCCGATACCAGGGTGCCTGGGTTGGTGCTGCCCGGGTGTCCGGTGG
CCACCGCGATGCTCCCGGTGCTCCCACCGACACTACCGCCAGCAC
Found at i:79361 original size:12 final size:12
Alignment explanation
Indices: 79344--79377 Score: 68
Period size: 12 Copynumber: 2.8 Consensus size: 12
79334 CTCACACCCA
79344 AACCACTCGCTG
1 AACCACTCGCTG
79356 AACCACTCGCTG
1 AACCACTCGCTG
79368 AACCACTCGC
1 AACCACTCGC
79378 ACCAGCTGCC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.26, C:0.44, G:0.15, T:0.15
Consensus pattern (12 bp):
AACCACTCGCTG
Left flanking sequence: Indices 78844 -- 79343
GACGTAGGGCGCTGGCAGCAAGTGGCGTCGCGGCAGCGCCAGCTTCGGCGGCATGTCCTCGAACT
GGTCGAGCAACCCGCGGGTCAGGAGCTCGGGCTTGCGGAGGATGTCGTTGGGGGTCACCAGCTTG
GTGTAGCCAAACTCGCCAAAGAGGTTGGTGGGCGAGCGGGTCCGCAGCGGCTGTGGCAGGTGGAG
CGGGTGCTCGCCCGGGTCGGGCATCAAGTACGAGAGCGGTGGTGGCGGCAGGTGCGAGCCGGGCG
ATGCTTTGGCTGCGCTGAGCCGCGAGAGCGACAGCAGCGACGAGTGGCGCGACGAGGTGGCGCGG
ATGGTGCCTGGGCTGCCCGCGGTGCCCGTGGAACGGGAAAACTCACCACCTCGAAAGTCACCACT
GCCTCGCGGCGAGTGGGACGAGGCTCCAGGAACAGTGGAAACGCCAGAGCCGATGGCAATAGGGT
GTGCTCCACTCGCGCCTACACCACTTGCTGAACCACTCACACCCA
Right flanking sequence: Indices 79378 -- 79877
ACCAGCTGCCCACTCCAGGTTCGACCGCGGCGTGGACGTGCCCAGCGGGCGTGGCGGCGTCGCCC
GGTGCTCAAAGTCAAGCGGCAACAGCAGCTGCGAGAGCGTCAGCGAGTGGTGCGGCTCGTACTTG
CCCTTGAGGTCCGCCAGCGGGCGGTGGCCCAGCAACAGCCGGGCGAGCGGCGGCAGCTGCAGGTC
GCCGGCCCGTGTCACCAGCGGACTGCGCAAGAGCGACAGCCGGATGCTCGAGCGGGGACTCACGT
CGCCCGAGTCGGCGGTCTTGACCGGCGGGCGGGTCTGCGAGTTGGTGCGCGAGCGGGACAGCCGC
GAGCCCGAGTTTGTGCGGGGCCTGGCGTCAAGCGGTCGCGGTGGCGGGCGGATGGGCTCGGACGC
CTCGGAGTCCGATACCAGGGTGCCTGGGTTGGTGCTGCCCGGGTGTCCGGTGGCCACCGCGATGC
TCCCGGTGCTCCCACCGACACTACCGCCAGCACTACCGCCAACAC
Found at i:79868 original size:12 final size:12
Alignment explanation
Indices: 79851--79890 Score: 53
Period size: 12 Copynumber: 3.3 Consensus size: 12
79841 CTCCCACCGA
79851 CACTACCGCCAG
1 CACTACCGCCAG
*
79863 CACTACCGCCAA
1 CACTACCGCCAG
* *
79875 CACTGCCTCCAG
1 CACTACCGCCAG
79887 CACT
1 CACT
79891 GCCTCCACCG
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
12 24 1.00
ACGTcount: A:0.25, C:0.50, G:0.12, T:0.12
Consensus pattern (12 bp):
CACTACCGCCAG
Left flanking sequence: Indices 79351 -- 79850
CGCTGAACCACTCGCTGAACCACTCGCACCAGCTGCCCACTCCAGGTTCGACCGCGGCGTGGACG
TGCCCAGCGGGCGTGGCGGCGTCGCCCGGTGCTCAAAGTCAAGCGGCAACAGCAGCTGCGAGAGC
GTCAGCGAGTGGTGCGGCTCGTACTTGCCCTTGAGGTCCGCCAGCGGGCGGTGGCCCAGCAACAG
CCGGGCGAGCGGCGGCAGCTGCAGGTCGCCGGCCCGTGTCACCAGCGGACTGCGCAAGAGCGACA
GCCGGATGCTCGAGCGGGGACTCACGTCGCCCGAGTCGGCGGTCTTGACCGGCGGGCGGGTCTGC
GAGTTGGTGCGCGAGCGGGACAGCCGCGAGCCCGAGTTTGTGCGGGGCCTGGCGTCAAGCGGTCG
CGGTGGCGGGCGGATGGGCTCGGACGCCTCGGAGTCCGATACCAGGGTGCCTGGGTTGGTGCTGC
CCGGGTGTCCGGTGGCCACCGCGATGCTCCCGGTGCTCCCACCGA
Right flanking sequence: Indices 79891 -- 80390
GCCTCCACCGATGCTTCCGCCAACACTGCCTCCTCCAATGCTTCCGCCACCACTGCCCACGCTGG
TGCGCTCGCCCGTCAGCGTCAGCGTCCGCGAGCGCCTCACGCTGCCCAGCCGCGACGACGGGCCC
AGCGCCAGCTCGCGCACCCGCCGCGGGTCGCTGTCGTGGCGGCTCACGTGGCGGCTCAACCCCAG
CTCCATCGTCAGCTCCTTGATCCGCTCCACCGCCTCGTGCACCGTGGCCAACACAAGGGCGTCGA
CCTCGCGCTTGATCTTGTCGCCAAACTGGAGCAGCACCACGAGCCGCAGCAACGCCGCCACCTTG
TCGGCGATCATCTCCTCGGTGTCGTCGATGATGGCGCGGATGGCCGGGTCCAGCGTCTCCATCCC
GGCGTGTGCCGCCGCCACCATCGCCAACAGCCGCTCGGTGGGCGGCAGCAACTGGGCCACGCCGT
CCTCCACCAGCCGCGGCGGGTTGATGGCGAGCGCGTCGTCGCAGA
Found at i:79891 original size:12 final size:12
Alignment explanation
Indices: 79859--79897 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
79849 GACACTACCG
* *
79859 CCAGCACTACCG
1 CCAGCACTGCCT
*
79871 CCAACACTGCCT
1 CCAGCACTGCCT
79883 CCAGCACTGCCT
1 CCAGCACTGCCT
79895 CCA
1 CCA
79898 CCGATGCTTC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.23, C:0.51, G:0.13, T:0.13
Consensus pattern (12 bp):
CCAGCACTGCCT
Left flanking sequence: Indices 79359 -- 79858
CACTCGCTGAACCACTCGCACCAGCTGCCCACTCCAGGTTCGACCGCGGCGTGGACGTGCCCAGC
GGGCGTGGCGGCGTCGCCCGGTGCTCAAAGTCAAGCGGCAACAGCAGCTGCGAGAGCGTCAGCGA
GTGGTGCGGCTCGTACTTGCCCTTGAGGTCCGCCAGCGGGCGGTGGCCCAGCAACAGCCGGGCGA
GCGGCGGCAGCTGCAGGTCGCCGGCCCGTGTCACCAGCGGACTGCGCAAGAGCGACAGCCGGATG
CTCGAGCGGGGACTCACGTCGCCCGAGTCGGCGGTCTTGACCGGCGGGCGGGTCTGCGAGTTGGT
GCGCGAGCGGGACAGCCGCGAGCCCGAGTTTGTGCGGGGCCTGGCGTCAAGCGGTCGCGGTGGCG
GGCGGATGGGCTCGGACGCCTCGGAGTCCGATACCAGGGTGCCTGGGTTGGTGCTGCCCGGGTGT
CCGGTGGCCACCGCGATGCTCCCGGTGCTCCCACCGACACTACCG
Right flanking sequence: Indices 79898 -- 80397
CCGATGCTTCCGCCAACACTGCCTCCTCCAATGCTTCCGCCACCACTGCCCACGCTGGTGCGCTC
GCCCGTCAGCGTCAGCGTCCGCGAGCGCCTCACGCTGCCCAGCCGCGACGACGGGCCCAGCGCCA
GCTCGCGCACCCGCCGCGGGTCGCTGTCGTGGCGGCTCACGTGGCGGCTCAACCCCAGCTCCATC
GTCAGCTCCTTGATCCGCTCCACCGCCTCGTGCACCGTGGCCAACACAAGGGCGTCGACCTCGCG
CTTGATCTTGTCGCCAAACTGGAGCAGCACCACGAGCCGCAGCAACGCCGCCACCTTGTCGGCGA
TCATCTCCTCGGTGTCGTCGATGATGGCGCGGATGGCCGGGTCCAGCGTCTCCATCCCGGCGTGT
GCCGCCGCCACCATCGCCAACAGCCGCTCGGTGGGCGGCAGCAACTGGGCCACGCCGTCCTCCAC
CAGCCGCGGCGGGTTGATGGCGAGCGCGTCGTCGCAGAGCGCCAC
Found at i:79931 original size:27 final size:27
Alignment explanation
Indices: 79887--79947 Score: 95
Period size: 27 Copynumber: 2.3 Consensus size: 27
79877 CTGCCTCCAG
*
79887 CACTGCCTCCACCGATGCTTCCGCCAA
1 CACTGCCTCCACCAATGCTTCCGCCAA
* *
79914 CACTGCCTCCTCCAATGCTTCCGCCAC
1 CACTGCCTCCACCAATGCTTCCGCCAA
79941 CACTGCC
1 CACTGCC
79948 CACGCTGGTG
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.16, C:0.51, G:0.13, T:0.20
Consensus pattern (27 bp):
CACTGCCTCCACCAATGCTTCCGCCAA
Left flanking sequence: Indices 79387 -- 79886
CCACTCCAGGTTCGACCGCGGCGTGGACGTGCCCAGCGGGCGTGGCGGCGTCGCCCGGTGCTCAA
AGTCAAGCGGCAACAGCAGCTGCGAGAGCGTCAGCGAGTGGTGCGGCTCGTACTTGCCCTTGAGG
TCCGCCAGCGGGCGGTGGCCCAGCAACAGCCGGGCGAGCGGCGGCAGCTGCAGGTCGCCGGCCCG
TGTCACCAGCGGACTGCGCAAGAGCGACAGCCGGATGCTCGAGCGGGGACTCACGTCGCCCGAGT
CGGCGGTCTTGACCGGCGGGCGGGTCTGCGAGTTGGTGCGCGAGCGGGACAGCCGCGAGCCCGAG
TTTGTGCGGGGCCTGGCGTCAAGCGGTCGCGGTGGCGGGCGGATGGGCTCGGACGCCTCGGAGTC
CGATACCAGGGTGCCTGGGTTGGTGCTGCCCGGGTGTCCGGTGGCCACCGCGATGCTCCCGGTGC
TCCCACCGACACTACCGCCAGCACTACCGCCAACACTGCCTCCAG
Right flanking sequence: Indices 79948 -- 80447
CACGCTGGTGCGCTCGCCCGTCAGCGTCAGCGTCCGCGAGCGCCTCACGCTGCCCAGCCGCGACG
ACGGGCCCAGCGCCAGCTCGCGCACCCGCCGCGGGTCGCTGTCGTGGCGGCTCACGTGGCGGCTC
AACCCCAGCTCCATCGTCAGCTCCTTGATCCGCTCCACCGCCTCGTGCACCGTGGCCAACACAAG
GGCGTCGACCTCGCGCTTGATCTTGTCGCCAAACTGGAGCAGCACCACGAGCCGCAGCAACGCCG
CCACCTTGTCGGCGATCATCTCCTCGGTGTCGTCGATGATGGCGCGGATGGCCGGGTCCAGCGTC
TCCATCCCGGCGTGTGCCGCCGCCACCATCGCCAACAGCCGCTCGGTGGGCGGCAGCAACTGGGC
CACGCCGTCCTCCACCAGCCGCGGCGGGTTGATGGCGAGCGCGTCGTCGCAGAGCGCCACCAAGT
GCTGGAGAATGCCAAAGGGGAACTTTTTCCCGTGGCGGAGGTGGC
Found at i:81187 original size:21 final size:21
Alignment explanation
Indices: 81163--81204 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
81153 GACCGGAGGG
*
81163 AGGGAGGGTTTGACCAGAGTC
1 AGGGAGGGTCTGACCAGAGTC
*
81184 AGGGAGGGTCTGGCCAGAGTC
1 AGGGAGGGTCTGACCAGAGTC
81205 GTCGGAGGTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.21, C:0.17, G:0.45, T:0.17
Consensus pattern (21 bp):
AGGGAGGGTCTGACCAGAGTC
Left flanking sequence: Indices 80663 -- 81162
GCCTGGAGCTCCTCGTCGGCGCGGTGCTCGACGATACAGAGGTCCAGGTGGCGCTCGATGAACCA
CGCCGGCACGGTGGCCTCGCAGATGCGGCACAACACCGTCTTGGGCTGGGGCACTGCCTCGTCGG
AGATGATGCCGAGCTCGGTCAAGTTGCCGAGGTAGCCCTCGAACATCTCGGCGCCGAACCCGAGC
AAGTCGATGAGCCGCGGCGGCACCAGGAGGTCGAGGTCGATGTGGACCCATGGCTTGATTGTCCA
CATCAGGTACGATGGGACGCCCTTTTCGTGGATGAGGATGCCCTGGGCCTCGAGCTCGATGACGT
CGCCGTTGTTGGTGATGTTGGACTGTTGCAGGTGTGCCAGCAGGGCCAGCGGGCGCCGGACGATG
GTGGCGTCGGCGGATGCAGTGGAGGAGGGCGACGGCGGAATGTCGGGCGACGGCGGCTCGAGGGA
GGGAGGCGGGAGGGTGTGAGTGGAGGGAGGGAGGTGACCGGAGGG
Right flanking sequence: Indices 81205 -- 81704
GTCGGAGGTTACGCGTAGCCCACCTGCGGTAGGTTCAGTTCCAGTGGAAATGGAGTCACCGGTGG
AGACCCCGGTGGAAATGGCACCTGTGGAAATAGAGTCACCTGTGGAATTGGAGACACCTGTGGAA
ATCGAGCCACCTGTAATGGAGACACCGGTGGAATTGGAGTCTGTGACAACGGTGGTATCACCTAC
TGAACCAGAAACACCATCCTGTCGTAGCTCATCGTCGCCTTCCCCGTTAGCTTCGCCTGCAAAAC
TAACGTCGTCGCCCTCGCCGGCAATTGCGGGCTCGGCCAGCGCGTGCAGCACCTCGTCGTCCACG
TCGTTGGTGGCAGTGATAAACTTAACCTTGTAGCTACAGTCGTCGCTGATCATCTTGTCTATGGC
GTCGTTGAACACCCGGAGATCGTCCGCGGTATTGCCAATCATAATCAGCGAGATGGGGCGCCCCA
CAATCTTCTTGGGCTTGGTGCCCACCATCGTCACCCAGTTCAGCA
Found at i:81311 original size:18 final size:18
Alignment explanation
Indices: 81288--81348 Score: 77
Period size: 18 Copynumber: 3.4 Consensus size: 18
81278 GTGGAAATGG
*
81288 CACCTGTGGAAATAGAGT
1 CACCTGTGGAAATAGAGA
* *
81306 CACCTGTGGAATTGGAGA
1 CACCTGTGGAAATAGAGA
* *
81324 CACCTGTGGAAATCGAGC
1 CACCTGTGGAAATAGAGA
81342 CACCTGT
1 CACCTGT
81349 AATGGAGACA
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 37 1.00
ACGTcount: A:0.28, C:0.23, G:0.28, T:0.21
Consensus pattern (18 bp):
CACCTGTGGAAATAGAGA
Left flanking sequence: Indices 80788 -- 81287
GTCGGAGATGATGCCGAGCTCGGTCAAGTTGCCGAGGTAGCCCTCGAACATCTCGGCGCCGAACC
CGAGCAAGTCGATGAGCCGCGGCGGCACCAGGAGGTCGAGGTCGATGTGGACCCATGGCTTGATT
GTCCACATCAGGTACGATGGGACGCCCTTTTCGTGGATGAGGATGCCCTGGGCCTCGAGCTCGAT
GACGTCGCCGTTGTTGGTGATGTTGGACTGTTGCAGGTGTGCCAGCAGGGCCAGCGGGCGCCGGA
CGATGGTGGCGTCGGCGGATGCAGTGGAGGAGGGCGACGGCGGAATGTCGGGCGACGGCGGCTCG
AGGGAGGGAGGCGGGAGGGTGTGAGTGGAGGGAGGGAGGTGACCGGAGGGAGGGAGGGTTTGACC
AGAGTCAGGGAGGGTCTGGCCAGAGTCGTCGGAGGTTACGCGTAGCCCACCTGCGGTAGGTTCAG
TTCCAGTGGAAATGGAGTCACCGGTGGAGACCCCGGTGGAAATGG
Right flanking sequence: Indices 81349 -- 81848
AATGGAGACACCGGTGGAATTGGAGTCTGTGACAACGGTGGTATCACCTACTGAACCAGAAACAC
CATCCTGTCGTAGCTCATCGTCGCCTTCCCCGTTAGCTTCGCCTGCAAAACTAACGTCGTCGCCC
TCGCCGGCAATTGCGGGCTCGGCCAGCGCGTGCAGCACCTCGTCGTCCACGTCGTTGGTGGCAGT
GATAAACTTAACCTTGTAGCTACAGTCGTCGCTGATCATCTTGTCTATGGCGTCGTTGAACACCC
GGAGATCGTCCGCGGTATTGCCAATCATAATCAGCGAGATGGGGCGCCCCACAATCTTCTTGGGC
TTGGTGCCCACCATCGTCACCCAGTTCAGCAGCAAGTAGCGCACCCGCCCGTCCATGTCGAGCTC
CATCACCGCGGTGGGGTTGTTGGCCAGCGCCAACCGTAGATCAACCTCCTCGGCAAGCGTCTCGG
CAAAGCTCGAGCTGGTCAGCGCCTGGGGGGCCATCGGAGTCCCCT
Found at i:81360 original size:33 final size:35
Alignment explanation
Indices: 81288--81367 Score: 110
Period size: 36 Copynumber: 2.3 Consensus size: 35
81278 GTGGAAATGG
*
81288 CACCTGTGGAAATAGAGTCACCTGTGGAATTGGAGA
1 CACCTGTGGAAATAGAGCCACCTGT-GAATTGGAGA
*
81324 CACCTGTGGAAATCGAGCCACCTGT-AA-TGGAGA
1 CACCTGTGGAAATAGAGCCACCTGTGAATTGGAGA
*
81357 CACCGGTGGAA
1 CACCTGTGGAA
81368 TTGGAGTCTG
Statistics
Matches: 41, Mismatches: 3, Indels: 3
0.87 0.06 0.06
Matches are distributed among these distances:
33 16 0.39
34 2 0.05
36 23 0.56
ACGTcount: A:0.30, C:0.21, G:0.30, T:0.19
Consensus pattern (35 bp):
CACCTGTGGAAATAGAGCCACCTGTGAATTGGAGA
Left flanking sequence: Indices 80788 -- 81287
GTCGGAGATGATGCCGAGCTCGGTCAAGTTGCCGAGGTAGCCCTCGAACATCTCGGCGCCGAACC
CGAGCAAGTCGATGAGCCGCGGCGGCACCAGGAGGTCGAGGTCGATGTGGACCCATGGCTTGATT
GTCCACATCAGGTACGATGGGACGCCCTTTTCGTGGATGAGGATGCCCTGGGCCTCGAGCTCGAT
GACGTCGCCGTTGTTGGTGATGTTGGACTGTTGCAGGTGTGCCAGCAGGGCCAGCGGGCGCCGGA
CGATGGTGGCGTCGGCGGATGCAGTGGAGGAGGGCGACGGCGGAATGTCGGGCGACGGCGGCTCG
AGGGAGGGAGGCGGGAGGGTGTGAGTGGAGGGAGGGAGGTGACCGGAGGGAGGGAGGGTTTGACC
AGAGTCAGGGAGGGTCTGGCCAGAGTCGTCGGAGGTTACGCGTAGCCCACCTGCGGTAGGTTCAG
TTCCAGTGGAAATGGAGTCACCGGTGGAGACCCCGGTGGAAATGG
Right flanking sequence: Indices 81368 -- 81867
TTGGAGTCTGTGACAACGGTGGTATCACCTACTGAACCAGAAACACCATCCTGTCGTAGCTCATC
GTCGCCTTCCCCGTTAGCTTCGCCTGCAAAACTAACGTCGTCGCCCTCGCCGGCAATTGCGGGCT
CGGCCAGCGCGTGCAGCACCTCGTCGTCCACGTCGTTGGTGGCAGTGATAAACTTAACCTTGTAG
CTACAGTCGTCGCTGATCATCTTGTCTATGGCGTCGTTGAACACCCGGAGATCGTCCGCGGTATT
GCCAATCATAATCAGCGAGATGGGGCGCCCCACAATCTTCTTGGGCTTGGTGCCCACCATCGTCA
CCCAGTTCAGCAGCAAGTAGCGCACCCGCCCGTCCATGTCGAGCTCCATCACCGCGGTGGGGTTG
TTGGCCAGCGCCAACCGTAGATCAACCTCCTCGGCAAGCGTCTCGGCAAAGCTCGAGCTGGTCAG
CGCCTGGGGGGCCATCGGAGTCCCCTTTTGCACCGGGGTGCCGCC
Found at i:83164 original size:13 final size:13
Alignment explanation
Indices: 83146--83176 Score: 62
Period size: 13 Copynumber: 2.4 Consensus size: 13
83136 TCTAGACCTG
83146 AGCAAGTTTGCCT
1 AGCAAGTTTGCCT
83159 AGCAAGTTTGCCT
1 AGCAAGTTTGCCT
83172 AGCAA
1 AGCAA
83177 CTTGCTCAGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.29, C:0.23, G:0.23, T:0.26
Consensus pattern (13 bp):
AGCAAGTTTGCCT
Left flanking sequence: Indices 82646 -- 83145
ACACGGCTACGTGTGGGCTCTCTGCCGCAGAGGAATGCGTAGAATTGCTCGCAGGAATCCGGGGT
AATTATTAGCGGGTCTTTGCGAGATCGGGCCGATGCCCTCGACAGCCAGAGGTGACACCGGTGTC
ATTTCGCTAGTGATTAGTAATGCCCCCACAAAGCCGCGGGGGCGCCTGAGCCAACGTGCACGAAC
AATCGACCCCTTCATCAGCTAATCATCGGCTTAGCCACCAGTGCATGCGTCAAAAGCAACGTGGC
TCTCCGTGGTGGGCTCATGTTTAGGTTGTTGGTGCCGACTGGGCTCGGTCAACCCCGCCATCACC
TTGGTTGCGGGCTGCGCCTGCCCACGAGGCGGTGTCTACGCTTGGTGGCGCCACTTCCGGCAGCT
ACGATGGTGGTGGTTGGATCTGAGCCTCGTCTTGTGCGACGGGATCGATCTATCCATTTCCCAAA
ATAGATCCACCCCACAGACACTAGCTAACAATAGCTCTAGACCTG
Right flanking sequence: Indices 83177 -- 83676
CTTGCTCAGATACTGTTGCTATGGTAGGTGATGGCCTACTTGTACCCCTTAACACGCTGTTCTCC
CCCACGTAGTGATCTCAGTCAATTCTCTCCCTAGTGATCGACCCCTGGGTCACAAACACTGTCTC
CCCGGTATCAAGCTCCTATCAGTGCCACAATTATCAGCCCACCCCCGTCACAACCCCTACAACCC
CCACCCCTACAACTCCTCACCCCACATCCCTTCAACCCCGTCATCACCTCTTCACCCCAGTTTCA
ACAAAGCGACGCTTTAATGATCTAAAAAAAAAAAAAGTATAACTGAAATGCTTGGCGCATTAAAA
GAAGTGAAAGTCGTTCTATAAAAGTTCCTGGCCGAGTTGGATCGGCATAGATCGTACCGAGTTGG
ATCGGTGAATTCGTAAGGTCATAAAAGTTGGATTTTAATCCCGGAGTCCGTCAGCCACCCCCCGT
TAAGGGAGGGCAGCCCTGGACGAGAACAGCCGCCTGGTTACAGGG
Found at i:83379 original size:15 final size:16
Alignment explanation
Indices: 83359--83394 Score: 56
Period size: 15 Copynumber: 2.3 Consensus size: 16
83349 CCCCGTCACA
83359 ACCCCTACAAC-CCCC
1 ACCCCTACAACTCCCC
*
83374 ACCCCTACAACTCCTC
1 ACCCCTACAACTCCCC
83390 ACCCC
1 ACCCC
83395 ACATCCCTTC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 11 0.58
16 8 0.42
ACGTcount: A:0.25, C:0.64, G:0.00, T:0.11
Consensus pattern (16 bp):
ACCCCTACAACTCCCC
Left flanking sequence: Indices 82859 -- 83358
CTAATCATCGGCTTAGCCACCAGTGCATGCGTCAAAAGCAACGTGGCTCTCCGTGGTGGGCTCAT
GTTTAGGTTGTTGGTGCCGACTGGGCTCGGTCAACCCCGCCATCACCTTGGTTGCGGGCTGCGCC
TGCCCACGAGGCGGTGTCTACGCTTGGTGGCGCCACTTCCGGCAGCTACGATGGTGGTGGTTGGA
TCTGAGCCTCGTCTTGTGCGACGGGATCGATCTATCCATTTCCCAAAATAGATCCACCCCACAGA
CACTAGCTAACAATAGCTCTAGACCTGAGCAAGTTTGCCTAGCAAGTTTGCCTAGCAACTTGCTC
AGATACTGTTGCTATGGTAGGTGATGGCCTACTTGTACCCCTTAACACGCTGTTCTCCCCCACGT
AGTGATCTCAGTCAATTCTCTCCCTAGTGATCGACCCCTGGGTCACAAACACTGTCTCCCCGGTA
TCAAGCTCCTATCAGTGCCACAATTATCAGCCCACCCCCGTCACA
Right flanking sequence: Indices 83395 -- 83894
ACATCCCTTCAACCCCGTCATCACCTCTTCACCCCAGTTTCAACAAAGCGACGCTTTAATGATCT
AAAAAAAAAAAAAGTATAACTGAAATGCTTGGCGCATTAAAAGAAGTGAAAGTCGTTCTATAAAA
GTTCCTGGCCGAGTTGGATCGGCATAGATCGTACCGAGTTGGATCGGTGAATTCGTAAGGTCATA
AAAGTTGGATTTTAATCCCGGAGTCCGTCAGCCACCCCCCGTTAAGGGAGGGCAGCCCTGGACGA
GAACAGCCGCCTGGTTACAGGGTGTAGGTGAACATAGGCTTGCTGTCCAAAATCGATCGCTTCTT
GATCTCCTCAAGCAAATCGGTGTTCTTGCGCTCGTTACGCTGCAAAATGAGGTTCTTCAAGCACT
TGTTCTCCATCTCAAGCTGCTTCAACTTCTTCTCGAGGGCAACCATCTTGTCCTGCAAGTCCTTG
GACCGCTGCTCCATCTCCTGCTCCTTCATCTTCTTCTTGATCCGG
Found at i:86157 original size:12 final size:12
Alignment explanation
Indices: 86140--86165 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
86130 CCCGAGTCGA
86140 CGCGACGGTTGT
1 CGCGACGGTTGT
86152 CGCGACGGTTGT
1 CGCGACGGTTGT
86164 CG
1 CG
86166 GGTAATGACA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.08, C:0.27, G:0.42, T:0.23
Consensus pattern (12 bp):
CGCGACGGTTGT
Left flanking sequence: Indices 85640 -- 86139
CTAAATCGTGATCCCTATTTTGTAAGCTTTTTCCATTTTTCAGGAAAAATGAAACTTCTGTGTCA
GTCACCAGTTCAATCCCCATCTCGGACAAAGCACTAATGGCCGCCAATGAAACATTAACAAAATC
TACCCATAGTCACCCTCATCTATTGTCGCGTCTAATGCCGTGACAACCGATTGTTGGTACAGGCG
ACCACCTGAAACTAACAGAAATCAATAGAAATGCTTATTGTTGGTGGTCATTCCACCATTCACCT
CGGGTTTTGCTTGCTGCTGAGCCCAATAAGGATACGAGTATTCTTGATTGTATCCAATAATAAGA
TTGTTGCTAGTTGGCGCGCACAGATTGGCTGCTGGGCCCACTAGGAAAAAACGCGAGGATTTACA
CAGGCAACGGTGGATCCTGCGTTTACCCCTGTAGGCCAACTGGCGTCACGTCTACCCCTGCCTAA
AATTGCTGGCCTCTCTCCCTAAGCGGTCTCGTCACCCCGAGTCGA
Right flanking sequence: Indices 86166 -- 86665
GGTAATGACAAGCCAGTGGTCCAACCTCCCAATAATAATTTCTGCAAGTGAATCTGAGCGAAACA
ACTAGTGATGGGCCCGGCCCGGAGAGAATGCTAAACCTAATTGTCGGTGCGTATTTCATTTACCA
TTCGACGTTTATTGACGGTTCTCGGACCAATGTAGTGGGTCGTCCCACTCTTCTAGACCCCACGC
AGGGCATCGGAATGTGTTATGCAGGGCGTAAAAGCCCCTTCGTCATCAGTTTAACCTATTTGAGG
AAAAAAAGCAATGCGGGATCAATCGGCCTTGTAATGGTAGCGAAGGTCCGCCAACAGGCCCACCG
CCCGGGTGGCTGCGCGCTGCTCCCACCATACCCACCCACAAATGACACCACATACAGCCAACGCG
CACATTTGCGGCCCACCTCCCGCGGCTCGCCCGATGCCTGCAACGCACAATCCATTGGTGATAAA
AATAATTGACGCGTGTCTTGGGCGCAGCCACGCACCAAAAAGCAC
Found at i:87894 original size:12 final size:12
Alignment explanation
Indices: 87860--87934 Score: 78
Period size: 12 Copynumber: 6.2 Consensus size: 12
87850 CTCGCGAGAG
87860 GACGACAACCGT
1 GACGACAACCGT
* **
87872 GACCAGGACCGT
1 GACGACAACCGT
87884 GACGACAACCGT
1 GACGACAACCGT
*** **
87896 GACCTGAACCAC
1 GACGACAACCGT
87908 GACGACAACCGT
1 GACGACAACCGT
87920 GACGACAACCGT
1 GACGACAACCGT
87932 GAC
1 GAC
87935 CAGGGCCACG
Statistics
Matches: 47, Mismatches: 16, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
12 47 1.00
ACGTcount: A:0.32, C:0.35, G:0.25, T:0.08
Consensus pattern (12 bp):
GACGACAACCGT
Left flanking sequence: Indices 87360 -- 87859
CAATAATTCTCGTATGAAACGCATTCTTAAAACTTAGCCATTATCCGAGAAAAAAAGTTGATAGA
TCGCACCTCACCCCTTTACCTAACAACCCTTTCGGCGTTATTAACCGTTGAACCCCAACCATCCC
CGGTTCAATTATCCCCATATCCACCCCATTCTTTAGCTGAAGCCCCCATATCTTCAGTCCTTTCG
TTCTTCAAGAACCGTCCACTCGTTTAATACCCCAACAACAGACCGAGGCCGGGCTGACTACACTT
TTGGATACCCAGTTAGTCCCGTTCCCGTTTCCCCAGCAAGACCCCCAGCAAGTCCTTATCCCCTA
GCTAGCTGTCTCGCTGATGTTGTTCAAGAAAAACTTTGTGTTGGCGGTGCTGATCGCCATGGCCG
CTGCCGCCGCCGCCGAACCCGAGGCGCCGGCCAAGCGGGGTGCGTTGGCTGGGTTGTTTGATGGG
TTTGAGAACTTGCTCAACCCTGGTGCCCAGGCCTCCTCGCGAGAG
Right flanking sequence: Indices 87935 -- 88434
CAGGGCCACGACAACAAGGCCGTCGCTGCGGCCGCCACCTCGTCGGAGTACGGCATCACCATCAC
CGAGTTGCCTGGCACTCCCAAGCCCACCCAGGCTCAGGAGGCGCCGTCCACCCCCGCCGTCGAGA
AGGCTCCCCAGTCGACCCAGCCGCTGGCTGCGCCCGTGCCCACGCTGGCCGCGCCCAAGCCCGAG
GCCAACGGGGCCGAGGAGTACTCTGGTCTTGTTGGTCCCGTGGACCAGCTGCCCGCTGAGCTGCC
CAAGGAGCCGGCTCCCACGCTGGCCCAGCCTACGCCCACCCCCGCCAAGACCGAGGAGCCGGCCA
CCAGTGCGACTCCCGAGCCCAAGGAGCCCGCTTCCACCGCGGCTCCCACGCCCGACGGCACCCAG
CCCGTGCTGACGGCGCCCGAGCCCACCAGCGTGGTGCCCGTGCTGACTCCCAAGGACGAGGCCAA
CGCTGCGGAGACCACCACTCCCTCAGCGTCGCCCTCGCCCGCGCC
Found at i:87929 original size:24 final size:24
Alignment explanation
Indices: 87860--87922 Score: 90
Period size: 24 Copynumber: 2.6 Consensus size: 24
87850 CTCGCGAGAG
* **
87860 GACGACAACCGTGACCAGGACCGT
1 GACGACAACCGTGACCAGAACCAC
*
87884 GACGACAACCGTGACCTGAACCAC
1 GACGACAACCGTGACCAGAACCAC
87908 GACGACAACCGTGAC
1 GACGACAACCGTGAC
87923 GACAACCGTG
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 35 1.00
ACGTcount: A:0.32, C:0.35, G:0.25, T:0.08
Consensus pattern (24 bp):
GACGACAACCGTGACCAGAACCAC
Left flanking sequence: Indices 87360 -- 87859
CAATAATTCTCGTATGAAACGCATTCTTAAAACTTAGCCATTATCCGAGAAAAAAAGTTGATAGA
TCGCACCTCACCCCTTTACCTAACAACCCTTTCGGCGTTATTAACCGTTGAACCCCAACCATCCC
CGGTTCAATTATCCCCATATCCACCCCATTCTTTAGCTGAAGCCCCCATATCTTCAGTCCTTTCG
TTCTTCAAGAACCGTCCACTCGTTTAATACCCCAACAACAGACCGAGGCCGGGCTGACTACACTT
TTGGATACCCAGTTAGTCCCGTTCCCGTTTCCCCAGCAAGACCCCCAGCAAGTCCTTATCCCCTA
GCTAGCTGTCTCGCTGATGTTGTTCAAGAAAAACTTTGTGTTGGCGGTGCTGATCGCCATGGCCG
CTGCCGCCGCCGCCGAACCCGAGGCGCCGGCCAAGCGGGGTGCGTTGGCTGGGTTGTTTGATGGG
TTTGAGAACTTGCTCAACCCTGGTGCCCAGGCCTCCTCGCGAGAG
Right flanking sequence: Indices 87923 -- 88422
GACAACCGTGACCAGGGCCACGACAACAAGGCCGTCGCTGCGGCCGCCACCTCGTCGGAGTACGG
CATCACCATCACCGAGTTGCCTGGCACTCCCAAGCCCACCCAGGCTCAGGAGGCGCCGTCCACCC
CCGCCGTCGAGAAGGCTCCCCAGTCGACCCAGCCGCTGGCTGCGCCCGTGCCCACGCTGGCCGCG
CCCAAGCCCGAGGCCAACGGGGCCGAGGAGTACTCTGGTCTTGTTGGTCCCGTGGACCAGCTGCC
CGCTGAGCTGCCCAAGGAGCCGGCTCCCACGCTGGCCCAGCCTACGCCCACCCCCGCCAAGACCG
AGGAGCCGGCCACCAGTGCGACTCCCGAGCCCAAGGAGCCCGCTTCCACCGCGGCTCCCACGCCC
GACGGCACCCAGCCCGTGCTGACGGCGCCCGAGCCCACCAGCGTGGTGCCCGTGCTGACTCCCAA
GGACGAGGCCAACGCTGCGGAGACCACCACTCCCTCAGCGTCGCC
Found at i:87944 original size:36 final size:36
Alignment explanation
Indices: 87879--87951 Score: 110
Period size: 36 Copynumber: 2.0 Consensus size: 36
87869 CGTGACCAGG
* *
87879 ACCGTGACGACAACCGTGACCTGAACCACGACGACA
1 ACCGTGACGACAACCGTGACCAGAACCACGACAACA
**
87915 ACCGTGACGACAACCGTGACCAGGGCCACGACAACA
1 ACCGTGACGACAACCGTGACCAGAACCACGACAACA
87951 A
1 A
87952 GGCCGTCGCT
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
36 33 1.00
ACGTcount: A:0.34, C:0.36, G:0.23, T:0.07
Consensus pattern (36 bp):
ACCGTGACGACAACCGTGACCAGAACCACGACAACA
Left flanking sequence: Indices 87379 -- 87878
CGCATTCTTAAAACTTAGCCATTATCCGAGAAAAAAAGTTGATAGATCGCACCTCACCCCTTTAC
CTAACAACCCTTTCGGCGTTATTAACCGTTGAACCCCAACCATCCCCGGTTCAATTATCCCCATA
TCCACCCCATTCTTTAGCTGAAGCCCCCATATCTTCAGTCCTTTCGTTCTTCAAGAACCGTCCAC
TCGTTTAATACCCCAACAACAGACCGAGGCCGGGCTGACTACACTTTTGGATACCCAGTTAGTCC
CGTTCCCGTTTCCCCAGCAAGACCCCCAGCAAGTCCTTATCCCCTAGCTAGCTGTCTCGCTGATG
TTGTTCAAGAAAAACTTTGTGTTGGCGGTGCTGATCGCCATGGCCGCTGCCGCCGCCGCCGAACC
CGAGGCGCCGGCCAAGCGGGGTGCGTTGGCTGGGTTGTTTGATGGGTTTGAGAACTTGCTCAACC
CTGGTGCCCAGGCCTCCTCGCGAGAGGACGACAACCGTGACCAGG
Right flanking sequence: Indices 87952 -- 88451
GGCCGTCGCTGCGGCCGCCACCTCGTCGGAGTACGGCATCACCATCACCGAGTTGCCTGGCACTC
CCAAGCCCACCCAGGCTCAGGAGGCGCCGTCCACCCCCGCCGTCGAGAAGGCTCCCCAGTCGACC
CAGCCGCTGGCTGCGCCCGTGCCCACGCTGGCCGCGCCCAAGCCCGAGGCCAACGGGGCCGAGGA
GTACTCTGGTCTTGTTGGTCCCGTGGACCAGCTGCCCGCTGAGCTGCCCAAGGAGCCGGCTCCCA
CGCTGGCCCAGCCTACGCCCACCCCCGCCAAGACCGAGGAGCCGGCCACCAGTGCGACTCCCGAG
CCCAAGGAGCCCGCTTCCACCGCGGCTCCCACGCCCGACGGCACCCAGCCCGTGCTGACGGCGCC
CGAGCCCACCAGCGTGGTGCCCGTGCTGACTCCCAAGGACGAGGCCAACGCTGCGGAGACCACCA
CTCCCTCAGCGTCGCCCTCGCCCGCGCCCGAGCCCACGGAGCAGT
Found at i:88126 original size:21 final size:21
Alignment explanation
Indices: 88086--88126 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
88076 TCGACCCAGC
* **
88086 CGCTGGCTGCGCCCGTGCCCA
1 CGCTGGCCGCGCCCAAGCCCA
88107 CGCTGGCCGCGCCCAAGCCC
1 CGCTGGCCGCGCCCAAGCCC
88127 GAGGCCAACG
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.07, C:0.51, G:0.32, T:0.10
Consensus pattern (21 bp):
CGCTGGCCGCGCCCAAGCCCA
Left flanking sequence: Indices 87586 -- 88085
CCAACAACAGACCGAGGCCGGGCTGACTACACTTTTGGATACCCAGTTAGTCCCGTTCCCGTTTC
CCCAGCAAGACCCCCAGCAAGTCCTTATCCCCTAGCTAGCTGTCTCGCTGATGTTGTTCAAGAAA
AACTTTGTGTTGGCGGTGCTGATCGCCATGGCCGCTGCCGCCGCCGCCGAACCCGAGGCGCCGGC
CAAGCGGGGTGCGTTGGCTGGGTTGTTTGATGGGTTTGAGAACTTGCTCAACCCTGGTGCCCAGG
CCTCCTCGCGAGAGGACGACAACCGTGACCAGGACCGTGACGACAACCGTGACCTGAACCACGAC
GACAACCGTGACGACAACCGTGACCAGGGCCACGACAACAAGGCCGTCGCTGCGGCCGCCACCTC
GTCGGAGTACGGCATCACCATCACCGAGTTGCCTGGCACTCCCAAGCCCACCCAGGCTCAGGAGG
CGCCGTCCACCCCCGCCGTCGAGAAGGCTCCCCAGTCGACCCAGC
Right flanking sequence: Indices 88127 -- 88626
GAGGCCAACGGGGCCGAGGAGTACTCTGGTCTTGTTGGTCCCGTGGACCAGCTGCCCGCTGAGCT
GCCCAAGGAGCCGGCTCCCACGCTGGCCCAGCCTACGCCCACCCCCGCCAAGACCGAGGAGCCGG
CCACCAGTGCGACTCCCGAGCCCAAGGAGCCCGCTTCCACCGCGGCTCCCACGCCCGACGGCACC
CAGCCCGTGCTGACGGCGCCCGAGCCCACCAGCGTGGTGCCCGTGCTGACTCCCAAGGACGAGGC
CAACGCTGCGGAGACCACCACTCCCTCAGCGTCGCCCTCGCCCGCGCCCGAGCCCACGGAGCAGT
CGTCCAAGCCCGAGCCCTCGGAGACTCCCCAGACCACCGAGCTGCCCAAGCCTGAGACCACTGAG
CTGCCTAAGCCCGAGACTACCGAGCTGCCCAAGCCCGAGTCCTCGGAGCTGCCCAAGCCTGAGCC
CACCTCGGAGCCCAAGCCCGAGGAGCTGGCGTCGGAGTCTCCCAA
Found at i:88511 original size:24 final size:24
Alignment explanation
Indices: 88482--88603 Score: 127
Period size: 24 Copynumber: 5.1 Consensus size: 24
88472 GAGACTCCCC
*
88482 AGACCACCGAGCTGCCCAAGCCTG
1 AGACCACCGAGCTGCCCAAGCCCG
* *
88506 AGACCACTGAGCTGCCTAAGCCCG
1 AGACCACCGAGCTGCCCAAGCCCG
*
88530 AGACTACCGAGCTGCCCAAGCCCG
1 AGACCACCGAGCTGCCCAAGCCCG
* * * *
88554 AGTCCTCGGAGCTGCCCAAGCCTG
1 AGACCACCGAGCTGCCCAAGCCCG
* ** **
88578 AGCCCACCTCGGAGCCCAAGCCCG
1 AGACCACCGAGCTGCCCAAGCCCG
88602 AG
1 AG
88604 GAGCTGGCGT
Statistics
Matches: 79, Mismatches: 19, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
24 79 1.00
ACGTcount: A:0.23, C:0.41, G:0.26, T:0.10
Consensus pattern (24 bp):
AGACCACCGAGCTGCCCAAGCCCG
Left flanking sequence: Indices 87982 -- 88481
GTACGGCATCACCATCACCGAGTTGCCTGGCACTCCCAAGCCCACCCAGGCTCAGGAGGCGCCGT
CCACCCCCGCCGTCGAGAAGGCTCCCCAGTCGACCCAGCCGCTGGCTGCGCCCGTGCCCACGCTG
GCCGCGCCCAAGCCCGAGGCCAACGGGGCCGAGGAGTACTCTGGTCTTGTTGGTCCCGTGGACCA
GCTGCCCGCTGAGCTGCCCAAGGAGCCGGCTCCCACGCTGGCCCAGCCTACGCCCACCCCCGCCA
AGACCGAGGAGCCGGCCACCAGTGCGACTCCCGAGCCCAAGGAGCCCGCTTCCACCGCGGCTCCC
ACGCCCGACGGCACCCAGCCCGTGCTGACGGCGCCCGAGCCCACCAGCGTGGTGCCCGTGCTGAC
TCCCAAGGACGAGGCCAACGCTGCGGAGACCACCACTCCCTCAGCGTCGCCCTCGCCCGCGCCCG
AGCCCACGGAGCAGTCGTCCAAGCCCGAGCCCTCGGAGACTCCCC
Right flanking sequence: Indices 88604 -- 89103
GAGCTGGCGTCGGAGTCTCCCAAGCCCGAGTCGTCTGCGCAGCCCGAGCCCACCTCGGAGCCCAA
GCCCGAGCCCTCAGCTTCCCCTGAGACGTCCTCTGAGCCCAAGCCCGAGACCTCGGCCGAGCCCA
AGCCTGAGAGCTCCGCTGAGCCCGAGCCCAAGCCCGAGTCCTCGGCTGAGCCCCAGCCTGAGACC
TCTGCGGAGCCCGAGCCCGTGACCTCGTCCGAGCCCAAGCCCGAGCCCGAGACCACCGCGCAGCC
CCTGCCTTCCGAGAAGCCCAAGGAGCCCGAGCCGTCGTCCGAGCCCCAGCCGCAGCCCGAGACCT
CCGAGCAGGCAGGCCCGTCGTCCGCGCCCGCTCCGGAGCCGCTGACCGAGCCCACGCTCTCGTTG
GTCGAGCCCACCGAGTCGGAGTTGAACACCGAGTCCACTCCGTCTCCGCAGCCCGACGTCACCCA
GACCCCCGACCAGCCGGGCACCACCACCCCGTTGGTGGAGCCTTC
Found at i:88718 original size:24 final size:24
Alignment explanation
Indices: 88691--88762 Score: 74
Period size: 24 Copynumber: 3.0 Consensus size: 24
88681 AGCTTCCCCT
*
88691 GAGACGTCCTCTGAGCCCAAGCCC
1 GAGACGTCCGCTGAGCCCAAGCCC
* * * *
88715 GAGACCTCGGCCGAGCCCAAGCCT
1 GAGACGTCCGCTGAGCCCAAGCCC
*
88739 GAGA-GCTCCGCTGAGCCCGAGCCC
1 GAGACG-TCCGCTGAGCCCAAGCCC
88763 AAGCCCGAGT
Statistics
Matches: 37, Mismatches: 10, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
24 37 1.00
ACGTcount: A:0.19, C:0.42, G:0.29, T:0.10
Consensus pattern (24 bp):
GAGACGTCCGCTGAGCCCAAGCCC
Left flanking sequence: Indices 88191 -- 88690
TGCCCAAGGAGCCGGCTCCCACGCTGGCCCAGCCTACGCCCACCCCCGCCAAGACCGAGGAGCCG
GCCACCAGTGCGACTCCCGAGCCCAAGGAGCCCGCTTCCACCGCGGCTCCCACGCCCGACGGCAC
CCAGCCCGTGCTGACGGCGCCCGAGCCCACCAGCGTGGTGCCCGTGCTGACTCCCAAGGACGAGG
CCAACGCTGCGGAGACCACCACTCCCTCAGCGTCGCCCTCGCCCGCGCCCGAGCCCACGGAGCAG
TCGTCCAAGCCCGAGCCCTCGGAGACTCCCCAGACCACCGAGCTGCCCAAGCCTGAGACCACTGA
GCTGCCTAAGCCCGAGACTACCGAGCTGCCCAAGCCCGAGTCCTCGGAGCTGCCCAAGCCTGAGC
CCACCTCGGAGCCCAAGCCCGAGGAGCTGGCGTCGGAGTCTCCCAAGCCCGAGTCGTCTGCGCAG
CCCGAGCCCACCTCGGAGCCCAAGCCCGAGCCCTCAGCTTCCCCT
Right flanking sequence: Indices 88763 -- 89262
AAGCCCGAGTCCTCGGCTGAGCCCCAGCCTGAGACCTCTGCGGAGCCCGAGCCCGTGACCTCGTC
CGAGCCCAAGCCCGAGCCCGAGACCACCGCGCAGCCCCTGCCTTCCGAGAAGCCCAAGGAGCCCG
AGCCGTCGTCCGAGCCCCAGCCGCAGCCCGAGACCTCCGAGCAGGCAGGCCCGTCGTCCGCGCCC
GCTCCGGAGCCGCTGACCGAGCCCACGCTCTCGTTGGTCGAGCCCACCGAGTCGGAGTTGAACAC
CGAGTCCACTCCGTCTCCGCAGCCCGACGTCACCCAGACCCCCGACCAGCCGGGCACCACCACCC
CGTTGGTGGAGCCTTCGGACGCTGAGTTGTCGCTGGTGCCCACCGCGGACGCCCAGCCGTCCGAG
GTGCCGTCGCCGCTGGCTCCCGAGGAAGTGGTGCCGTCGCCCGAGTCGTCGAACCCGCCCGTGCC
GCCCACCGACACCACGCCTGTGGTGCCCGAGGTGACGCCGCTGGC
Found at i:88753 original size:48 final size:47
Alignment explanation
Indices: 88688--88839 Score: 142
Period size: 54 Copynumber: 3.0 Consensus size: 47
88678 CTCAGCTTCC
*
88688 CCTGAGACGTCCTCTGAGCCCAAGCCCGAGACCTCGGCCGAGCCCAAG
1 CCTGAGAC-TCCGCTGAGCCCAAGCCCGAGACCTCGGCCGAGCCCAAG
* * *
88736 CCTGAGAGCTCCGCTGAGCCCGAGCCCAAGCCCGAGTCCTCGGCTGAGCCCCAG
1 CCTGAGA-CTCCGCT------GAGCCCAAGCCCGAGACCTCGGCCGAGCCCAAG
* * * * *
88790 CCTGAGACCTCTGCGGAGCCCGAGCCCGTGACCTCGTCCGAGCCCAAG
1 CCTGAGA-CTCCGCTGAGCCCAAGCCCGAGACCTCGGCCGAGCCCAAG
88838 CC
1 CC
88840 CGAGCCCGAG
Statistics
Matches: 84, Mismatches: 13, Indels: 14
0.76 0.12 0.13
Matches are distributed among these distances:
48 41 0.49
49 1 0.01
54 42 0.50
ACGTcount: A:0.18, C:0.43, G:0.28, T:0.11
Consensus pattern (47 bp):
CCTGAGACTCCGCTGAGCCCAAGCCCGAGACCTCGGCCGAGCCCAAG
Left flanking sequence: Indices 88188 -- 88687
AGCTGCCCAAGGAGCCGGCTCCCACGCTGGCCCAGCCTACGCCCACCCCCGCCAAGACCGAGGAG
CCGGCCACCAGTGCGACTCCCGAGCCCAAGGAGCCCGCTTCCACCGCGGCTCCCACGCCCGACGG
CACCCAGCCCGTGCTGACGGCGCCCGAGCCCACCAGCGTGGTGCCCGTGCTGACTCCCAAGGACG
AGGCCAACGCTGCGGAGACCACCACTCCCTCAGCGTCGCCCTCGCCCGCGCCCGAGCCCACGGAG
CAGTCGTCCAAGCCCGAGCCCTCGGAGACTCCCCAGACCACCGAGCTGCCCAAGCCTGAGACCAC
TGAGCTGCCTAAGCCCGAGACTACCGAGCTGCCCAAGCCCGAGTCCTCGGAGCTGCCCAAGCCTG
AGCCCACCTCGGAGCCCAAGCCCGAGGAGCTGGCGTCGGAGTCTCCCAAGCCCGAGTCGTCTGCG
CAGCCCGAGCCCACCTCGGAGCCCAAGCCCGAGCCCTCAGCTTCC
Right flanking sequence: Indices 88840 -- 89339
CGAGCCCGAGACCACCGCGCAGCCCCTGCCTTCCGAGAAGCCCAAGGAGCCCGAGCCGTCGTCCG
AGCCCCAGCCGCAGCCCGAGACCTCCGAGCAGGCAGGCCCGTCGTCCGCGCCCGCTCCGGAGCCG
CTGACCGAGCCCACGCTCTCGTTGGTCGAGCCCACCGAGTCGGAGTTGAACACCGAGTCCACTCC
GTCTCCGCAGCCCGACGTCACCCAGACCCCCGACCAGCCGGGCACCACCACCCCGTTGGTGGAGC
CTTCGGACGCTGAGTTGTCGCTGGTGCCCACCGCGGACGCCCAGCCGTCCGAGGTGCCGTCGCCG
CTGGCTCCCGAGGAAGTGGTGCCGTCGCCCGAGTCGTCGAACCCGCCCGTGCCGCCCACCGACAC
CACGCCTGTGGTGCCCGAGGTGACGCCGCTGGCGCCCACCGACTCGTTCGTGCCCACCGACGAGC
CGCTGAACCCGGCCACCGGGTTGGTGCTGCCCACCGAGGTGCCGC
Found at i:88761 original size:30 final size:30
Alignment explanation
Indices: 88703--88791 Score: 91
Period size: 30 Copynumber: 3.2 Consensus size: 30
88693 GACGTCCTCT
88703 GAGCCCAAGCCCGAGACCT---C-G-G-CC
1 GAGCCCAAGCCCGAGACCTCCGCTGAGCCC
* *
88727 GAGCCCAAGCCTGAGAGCTCCGCTGAGCCC
1 GAGCCCAAGCCCGAGACCTCCGCTGAGCCC
* *
88757 GAGCCCAAGCCCGAGTCCTCGGCTGAGCCC
1 GAGCCCAAGCCCGAGACCTCCGCTGAGCCC
*
88787 CAGCC
1 GAGCC
88792 TGAGACCTCT
Statistics
Matches: 52, Mismatches: 7, Indels: 6
0.80 0.11 0.09
Matches are distributed among these distances:
24 17 0.33
27 1 0.02
28 1 0.02
29 1 0.02
30 32 0.62
ACGTcount: A:0.19, C:0.44, G:0.29, T:0.08
Consensus pattern (30 bp):
GAGCCCAAGCCCGAGACCTCCGCTGAGCCC
Left flanking sequence: Indices 88203 -- 88702
CGGCTCCCACGCTGGCCCAGCCTACGCCCACCCCCGCCAAGACCGAGGAGCCGGCCACCAGTGCG
ACTCCCGAGCCCAAGGAGCCCGCTTCCACCGCGGCTCCCACGCCCGACGGCACCCAGCCCGTGCT
GACGGCGCCCGAGCCCACCAGCGTGGTGCCCGTGCTGACTCCCAAGGACGAGGCCAACGCTGCGG
AGACCACCACTCCCTCAGCGTCGCCCTCGCCCGCGCCCGAGCCCACGGAGCAGTCGTCCAAGCCC
GAGCCCTCGGAGACTCCCCAGACCACCGAGCTGCCCAAGCCTGAGACCACTGAGCTGCCTAAGCC
CGAGACTACCGAGCTGCCCAAGCCCGAGTCCTCGGAGCTGCCCAAGCCTGAGCCCACCTCGGAGC
CCAAGCCCGAGGAGCTGGCGTCGGAGTCTCCCAAGCCCGAGTCGTCTGCGCAGCCCGAGCCCACC
TCGGAGCCCAAGCCCGAGCCCTCAGCTTCCCCTGAGACGTCCTCT
Right flanking sequence: Indices 88792 -- 89291
TGAGACCTCTGCGGAGCCCGAGCCCGTGACCTCGTCCGAGCCCAAGCCCGAGCCCGAGACCACCG
CGCAGCCCCTGCCTTCCGAGAAGCCCAAGGAGCCCGAGCCGTCGTCCGAGCCCCAGCCGCAGCCC
GAGACCTCCGAGCAGGCAGGCCCGTCGTCCGCGCCCGCTCCGGAGCCGCTGACCGAGCCCACGCT
CTCGTTGGTCGAGCCCACCGAGTCGGAGTTGAACACCGAGTCCACTCCGTCTCCGCAGCCCGACG
TCACCCAGACCCCCGACCAGCCGGGCACCACCACCCCGTTGGTGGAGCCTTCGGACGCTGAGTTG
TCGCTGGTGCCCACCGCGGACGCCCAGCCGTCCGAGGTGCCGTCGCCGCTGGCTCCCGAGGAAGT
GGTGCCGTCGCCCGAGTCGTCGAACCCGCCCGTGCCGCCCACCGACACCACGCCTGTGGTGCCCG
AGGTGACGCCGCTGGCGCCCACCGACTCGTTCGTGCCCACCGACG
Found at i:88761 original size:54 final size:54
Alignment explanation
Indices: 88703--88816 Score: 174
Period size: 54 Copynumber: 2.1 Consensus size: 54
88693 GACGTCCTCT
* *
88703 GAGCCCAAGCCCGAGACCTCGGCCGAGCCCAAGCCTGAGAGCTCCGCTGAGCCC
1 GAGCCCAAGCCCGAGACCTCGGCCGAGCCCAAGCCTGAGACCTCCGCGGAGCCC
* * * *
88757 GAGCCCAAGCCCGAGTCCTCGGCTGAGCCCCAGCCTGAGACCTCTGCGGAGCCC
1 GAGCCCAAGCCCGAGACCTCGGCCGAGCCCAAGCCTGAGACCTCCGCGGAGCCC
88811 GAGCCC
1 GAGCCC
88817 GTGACCTCGT
Statistics
Matches: 54, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
54 54 1.00
ACGTcount: A:0.18, C:0.43, G:0.30, T:0.09
Consensus pattern (54 bp):
GAGCCCAAGCCCGAGACCTCGGCCGAGCCCAAGCCTGAGACCTCCGCGGAGCCC
Left flanking sequence: Indices 88203 -- 88702
CGGCTCCCACGCTGGCCCAGCCTACGCCCACCCCCGCCAAGACCGAGGAGCCGGCCACCAGTGCG
ACTCCCGAGCCCAAGGAGCCCGCTTCCACCGCGGCTCCCACGCCCGACGGCACCCAGCCCGTGCT
GACGGCGCCCGAGCCCACCAGCGTGGTGCCCGTGCTGACTCCCAAGGACGAGGCCAACGCTGCGG
AGACCACCACTCCCTCAGCGTCGCCCTCGCCCGCGCCCGAGCCCACGGAGCAGTCGTCCAAGCCC
GAGCCCTCGGAGACTCCCCAGACCACCGAGCTGCCCAAGCCTGAGACCACTGAGCTGCCTAAGCC
CGAGACTACCGAGCTGCCCAAGCCCGAGTCCTCGGAGCTGCCCAAGCCTGAGCCCACCTCGGAGC
CCAAGCCCGAGGAGCTGGCGTCGGAGTCTCCCAAGCCCGAGTCGTCTGCGCAGCCCGAGCCCACC
TCGGAGCCCAAGCCCGAGCCCTCAGCTTCCCCTGAGACGTCCTCT
Right flanking sequence: Indices 88817 -- 89316
GTGACCTCGTCCGAGCCCAAGCCCGAGCCCGAGACCACCGCGCAGCCCCTGCCTTCCGAGAAGCC
CAAGGAGCCCGAGCCGTCGTCCGAGCCCCAGCCGCAGCCCGAGACCTCCGAGCAGGCAGGCCCGT
CGTCCGCGCCCGCTCCGGAGCCGCTGACCGAGCCCACGCTCTCGTTGGTCGAGCCCACCGAGTCG
GAGTTGAACACCGAGTCCACTCCGTCTCCGCAGCCCGACGTCACCCAGACCCCCGACCAGCCGGG
CACCACCACCCCGTTGGTGGAGCCTTCGGACGCTGAGTTGTCGCTGGTGCCCACCGCGGACGCCC
AGCCGTCCGAGGTGCCGTCGCCGCTGGCTCCCGAGGAAGTGGTGCCGTCGCCCGAGTCGTCGAAC
CCGCCCGTGCCGCCCACCGACACCACGCCTGTGGTGCCCGAGGTGACGCCGCTGGCGCCCACCGA
CTCGTTCGTGCCCACCGACGAGCCGCTGAACCCGGCCACCGGGTT
Found at i:88784 original size:24 final size:24
Alignment explanation
Indices: 88703--88843 Score: 129
Period size: 24 Copynumber: 5.6 Consensus size: 24
88693 GACGTCCTCT
88703 GAGCCCAAGCCCGAGACCTCGGCC
1 GAGCCCAAGCCCGAGACCTCGGCC
* *
88727 GAGCCCAAGCCTGAGAGCTCCGCTGAGCCC
1 GAGCCCAAGCCCGAGA---CCTC-G-G-CC
* *
88757 GAGCCCAAGCCCGAGTCCTCGGCT
1 GAGCCCAAGCCCGAGACCTCGGCC
* * * *
88781 GAGCCCCAGCCTGAGACCTCTGCG
1 GAGCCCAAGCCCGAGACCTCGGCC
* * *
88805 GAGCCCGAGCCCGTGACCTCGTCC
1 GAGCCCAAGCCCGAGACCTCGGCC
88829 GAGCCCAAGCCCGAG
1 GAGCCCAAGCCCGAG
88844 CCCGAGACCA
Statistics
Matches: 92, Mismatches: 19, Indels: 12
0.75 0.15 0.10
Matches are distributed among these distances:
24 66 0.72
25 1 0.01
26 1 0.01
27 6 0.07
28 1 0.01
29 1 0.01
30 16 0.17
ACGTcount: A:0.18, C:0.43, G:0.30, T:0.09
Consensus pattern (24 bp):
GAGCCCAAGCCCGAGACCTCGGCC
Left flanking sequence: Indices 88203 -- 88702
CGGCTCCCACGCTGGCCCAGCCTACGCCCACCCCCGCCAAGACCGAGGAGCCGGCCACCAGTGCG
ACTCCCGAGCCCAAGGAGCCCGCTTCCACCGCGGCTCCCACGCCCGACGGCACCCAGCCCGTGCT
GACGGCGCCCGAGCCCACCAGCGTGGTGCCCGTGCTGACTCCCAAGGACGAGGCCAACGCTGCGG
AGACCACCACTCCCTCAGCGTCGCCCTCGCCCGCGCCCGAGCCCACGGAGCAGTCGTCCAAGCCC
GAGCCCTCGGAGACTCCCCAGACCACCGAGCTGCCCAAGCCTGAGACCACTGAGCTGCCTAAGCC
CGAGACTACCGAGCTGCCCAAGCCCGAGTCCTCGGAGCTGCCCAAGCCTGAGCCCACCTCGGAGC
CCAAGCCCGAGGAGCTGGCGTCGGAGTCTCCCAAGCCCGAGTCGTCTGCGCAGCCCGAGCCCACC
TCGGAGCCCAAGCCCGAGCCCTCAGCTTCCCCTGAGACGTCCTCT
Right flanking sequence: Indices 88844 -- 89343
CCCGAGACCACCGCGCAGCCCCTGCCTTCCGAGAAGCCCAAGGAGCCCGAGCCGTCGTCCGAGCC
CCAGCCGCAGCCCGAGACCTCCGAGCAGGCAGGCCCGTCGTCCGCGCCCGCTCCGGAGCCGCTGA
CCGAGCCCACGCTCTCGTTGGTCGAGCCCACCGAGTCGGAGTTGAACACCGAGTCCACTCCGTCT
CCGCAGCCCGACGTCACCCAGACCCCCGACCAGCCGGGCACCACCACCCCGTTGGTGGAGCCTTC
GGACGCTGAGTTGTCGCTGGTGCCCACCGCGGACGCCCAGCCGTCCGAGGTGCCGTCGCCGCTGG
CTCCCGAGGAAGTGGTGCCGTCGCCCGAGTCGTCGAACCCGCCCGTGCCGCCCACCGACACCACG
CCTGTGGTGCCCGAGGTGACGCCGCTGGCGCCCACCGACTCGTTCGTGCCCACCGACGAGCCGCT
GAACCCGGCCACCGGGTTGGTGCTGCCCACCGAGGTGCCGCAGCC
Found at i:88833 original size:78 final size:78
Alignment explanation
Indices: 88701--88849 Score: 183
Period size: 78 Copynumber: 1.9 Consensus size: 78
88691 GAGACGTCCT
* * * *
88701 CTGAGCCCAAGCCCGAGACCTCGGCCGAGCCCAAGCCTGAGAGCTCCGCTGAGCCCGAGCCCAAG
1 CTGAGCCCAAGCCCGAGACCTCGGCCGAGCCCAAGCCCGAGACCTCCGCCGAGCCCAAGCCCAAG
88766 CCCGAGTCCTCGG
66 CCCGAGTCCTCGG
* * * * * * *
88779 CTGAGCCCCAGCCTGAGACCTCTGCGGAGCCCGAGCCCGTGACCT-CGTCCGAGCCCAAGCCCGA
1 CTGAGCCCAAGCCCGAGACCTCGGCCGAGCCCAAGCCCGAGACCTCCG-CCGAGCCCAAGCCCAA
88843 GCCCGAG
65 GCCCGAG
88850 ACCACCGCGC
Statistics
Matches: 59, Mismatches: 11, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
77 2 0.03
78 57 0.97
ACGTcount: A:0.18, C:0.43, G:0.30, T:0.09
Consensus pattern (78 bp):
CTGAGCCCAAGCCCGAGACCTCGGCCGAGCCCAAGCCCGAGACCTCCGCCGAGCCCAAGCCCAAG
CCCGAGTCCTCGG
Left flanking sequence: Indices 88201 -- 88700
GCCGGCTCCCACGCTGGCCCAGCCTACGCCCACCCCCGCCAAGACCGAGGAGCCGGCCACCAGTG
CGACTCCCGAGCCCAAGGAGCCCGCTTCCACCGCGGCTCCCACGCCCGACGGCACCCAGCCCGTG
CTGACGGCGCCCGAGCCCACCAGCGTGGTGCCCGTGCTGACTCCCAAGGACGAGGCCAACGCTGC
GGAGACCACCACTCCCTCAGCGTCGCCCTCGCCCGCGCCCGAGCCCACGGAGCAGTCGTCCAAGC
CCGAGCCCTCGGAGACTCCCCAGACCACCGAGCTGCCCAAGCCTGAGACCACTGAGCTGCCTAAG
CCCGAGACTACCGAGCTGCCCAAGCCCGAGTCCTCGGAGCTGCCCAAGCCTGAGCCCACCTCGGA
GCCCAAGCCCGAGGAGCTGGCGTCGGAGTCTCCCAAGCCCGAGTCGTCTGCGCAGCCCGAGCCCA
CCTCGGAGCCCAAGCCCGAGCCCTCAGCTTCCCCTGAGACGTCCT
Right flanking sequence: Indices 88850 -- 89349
ACCACCGCGCAGCCCCTGCCTTCCGAGAAGCCCAAGGAGCCCGAGCCGTCGTCCGAGCCCCAGCC
GCAGCCCGAGACCTCCGAGCAGGCAGGCCCGTCGTCCGCGCCCGCTCCGGAGCCGCTGACCGAGC
CCACGCTCTCGTTGGTCGAGCCCACCGAGTCGGAGTTGAACACCGAGTCCACTCCGTCTCCGCAG
CCCGACGTCACCCAGACCCCCGACCAGCCGGGCACCACCACCCCGTTGGTGGAGCCTTCGGACGC
TGAGTTGTCGCTGGTGCCCACCGCGGACGCCCAGCCGTCCGAGGTGCCGTCGCCGCTGGCTCCCG
AGGAAGTGGTGCCGTCGCCCGAGTCGTCGAACCCGCCCGTGCCGCCCACCGACACCACGCCTGTG
GTGCCCGAGGTGACGCCGCTGGCGCCCACCGACTCGTTCGTGCCCACCGACGAGCCGCTGAACCC
GGCCACCGGGTTGGTGCTGCCCACCGAGGTGCCGCAGCCCGAGCC
Found at i:93092 original size:15 final size:15
Alignment explanation
Indices: 93072--93214 Score: 178
Period size: 15 Copynumber: 9.5 Consensus size: 15
93062 TTCCTCGCCC
*
93072 TCCTTCTTTTCGTTG
1 TCCTTCTTTTCGTCG
*
93087 TCCTTCTTTTCATCG
1 TCCTTCTTTTCGTCG
* *
93102 TTCTTCTTCTCGTCG
1 TCCTTCTTTTCGTCG
93117 TCCTTCTTTTCGTCG
1 TCCTTCTTTTCGTCG
93132 TCCTTCTTTTCGTCG
1 TCCTTCTTTTCGTCG
* *
93147 TCCTTCTTTTCATCT
1 TCCTTCTTTTCGTCG
*
93162 TCCTTCTTCTCGTCG
1 TCCTTCTTTTCGTCG
* * *
93177 TCCTTCTTCTCATCC
1 TCCTTCTTTTCGTCG
* *
93192 TCCTTCTTCTCGTCC
1 TCCTTCTTTTCGTCG
93207 TCCTTCTT
1 TCCTTCTT
93215 GGCGTCCTCC
Statistics
Matches: 113, Mismatches: 15, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
15 113 1.00
ACGTcount: A:0.02, C:0.36, G:0.08, T:0.53
Consensus pattern (15 bp):
TCCTTCTTTTCGTCG
Left flanking sequence: Indices 92572 -- 93071
GGGTGTTGTTGAGCAAGTCGTAGTACAGCCACACCACAATGGTGTCAAACGTCAAGAACCCCAAC
ATCGCCAACAAGTACCGCTGCAACGGCAAGATCTGGTTCTGCTTCCTCTTCTTCCAGAACTGGAA
CCCGTAGAGAGCAAAGATGACGGCGTACAACACCGCCATGATCCCGTACGCAGGCAACTTGGGCA
CCTCACTGGCAGAGAGGTAGCCGAACGCGTTCTGGAACAGCACCTGGCCCTTGTAGTGGCGCTGG
TGCATCAGCACCGTCAGCACGCAGTAGTAGCCGGTACGGGTGATGTTGTACTCGATCTGGGCACG
GCCCAACCGGTCCATCTTGGCGGTGAAGATCGTCAGGTTCTTGTGGGGGGTGTACAAGTATGTAC
CAAACTGGTCCTTGGTGCAGAGTTTGTGCAAAATGGCGTCATTGTCGCAGATGTACTGGCGCTTG
GGAGCGTGGGCGTCCTTCCGCTTCTCCTTGGTGTTTTCCTCGCCC
Right flanking sequence: Indices 93215 -- 93714
GGCGTCCTCCTTGGCTTGATCGTTGGCGCCCTTCACCAAGTCGTTGGGCTGATCCTCGTCACCGC
CCGCCACCTTGTCGCCCTCAACTCGACCAATGAACTCCAAGTCGCGGTACTCAAAGATGATGTAA
GAGATATCGACATCCGACACCGGACGGGGCGTTTCCTTGCCGTTCCACTTCTTGTTCTCAAACTG
GGTGATCTCAAATTTGATGCTAGGGTTTTTCAGTCCCCCCCAGTCTTCCTTCAGGTACACACCGG
CACACACCATCGACTTGTCCTTGTCGAACTTGACGGTGTTGGCCTGCGCACCCGCCAACAAACCG
GCGCAAACCAATGGTATTAGCATTCGCATTGGGGCAGTGGTTTTCTCGGTAGTGATCAATCGGTT
TTTCAATCAATTGCCGCAAAAGTGCGTGGTACGTGGTCGCACCGACAAAGTGCGGGATTTGGGGC
AGTTCGAGCAGAAACCCGGCAAACGCCACAATAGAACAGTGCTCA
Found at i:93120 original size:30 final size:30
Alignment explanation
Indices: 93072--93214 Score: 205
Period size: 30 Copynumber: 4.8 Consensus size: 30
93062 TTCCTCGCCC
* *
93072 TCCTTCTTTTCGTTGTCCTTCTTTTCATCG
1 TCCTTCTTCTCGTCGTCCTTCTTTTCATCG
* *
93102 TTCTTCTTCTCGTCGTCCTTCTTTTCGTCG
1 TCCTTCTTCTCGTCGTCCTTCTTTTCATCG
* *
93132 TCCTTCTTTTCGTCGTCCTTCTTTTCATCT
1 TCCTTCTTCTCGTCGTCCTTCTTTTCATCG
* *
93162 TCCTTCTTCTCGTCGTCCTTCTTCTCATCC
1 TCCTTCTTCTCGTCGTCCTTCTTTTCATCG
*
93192 TCCTTCTTCTCGTCCTCCTTCTT
1 TCCTTCTTCTCGTCGTCCTTCTT
93215 GGCGTCCTCC
Statistics
Matches: 101, Mismatches: 12, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 101 1.00
ACGTcount: A:0.02, C:0.36, G:0.08, T:0.53
Consensus pattern (30 bp):
TCCTTCTTCTCGTCGTCCTTCTTTTCATCG
Left flanking sequence: Indices 92572 -- 93071
GGGTGTTGTTGAGCAAGTCGTAGTACAGCCACACCACAATGGTGTCAAACGTCAAGAACCCCAAC
ATCGCCAACAAGTACCGCTGCAACGGCAAGATCTGGTTCTGCTTCCTCTTCTTCCAGAACTGGAA
CCCGTAGAGAGCAAAGATGACGGCGTACAACACCGCCATGATCCCGTACGCAGGCAACTTGGGCA
CCTCACTGGCAGAGAGGTAGCCGAACGCGTTCTGGAACAGCACCTGGCCCTTGTAGTGGCGCTGG
TGCATCAGCACCGTCAGCACGCAGTAGTAGCCGGTACGGGTGATGTTGTACTCGATCTGGGCACG
GCCCAACCGGTCCATCTTGGCGGTGAAGATCGTCAGGTTCTTGTGGGGGGTGTACAAGTATGTAC
CAAACTGGTCCTTGGTGCAGAGTTTGTGCAAAATGGCGTCATTGTCGCAGATGTACTGGCGCTTG
GGAGCGTGGGCGTCCTTCCGCTTCTCCTTGGTGTTTTCCTCGCCC
Right flanking sequence: Indices 93215 -- 93714
GGCGTCCTCCTTGGCTTGATCGTTGGCGCCCTTCACCAAGTCGTTGGGCTGATCCTCGTCACCGC
CCGCCACCTTGTCGCCCTCAACTCGACCAATGAACTCCAAGTCGCGGTACTCAAAGATGATGTAA
GAGATATCGACATCCGACACCGGACGGGGCGTTTCCTTGCCGTTCCACTTCTTGTTCTCAAACTG
GGTGATCTCAAATTTGATGCTAGGGTTTTTCAGTCCCCCCCAGTCTTCCTTCAGGTACACACCGG
CACACACCATCGACTTGTCCTTGTCGAACTTGACGGTGTTGGCCTGCGCACCCGCCAACAAACCG
GCGCAAACCAATGGTATTAGCATTCGCATTGGGGCAGTGGTTTTCTCGGTAGTGATCAATCGGTT
TTTCAATCAATTGCCGCAAAAGTGCGTGGTACGTGGTCGCACCGACAAAGTGCGGGATTTGGGGC
AGTTCGAGCAGAAACCCGGCAAACGCCACAATAGAACAGTGCTCA
Found at i:93123 original size:45 final size:45
Alignment explanation
Indices: 93065--93214 Score: 201
Period size: 45 Copynumber: 3.3 Consensus size: 45
93055 TGGTGTTTTC
* * *
93065 CTCGCCCTCCTTCTTTTCGTTGTCCTTCTTTTCATCGTTCTTCTT
1 CTCGTCCTCCTTCTTTTCGTCGTCCTTCTTTTCATCGTCCTTCTT
* *
93110 CTCGTCGTCCTTCTTTTCGTCGTCCTTCTTTTCGTCGTCCTTCTT
1 CTCGTCCTCCTTCTTTTCGTCGTCCTTCTTTTCATCGTCCTTCTT
* * * * * *
93155 TTCATCTTCCTTCTTCTCGTCGTCCTTCTTCTCATCCTCCTTCTT
1 CTCGTCCTCCTTCTTTTCGTCGTCCTTCTTTTCATCGTCCTTCTT
93200 CTCGTCCTCCTTCTT
1 CTCGTCCTCCTTCTT
93215 GGCGTCCTCC
Statistics
Matches: 90, Mismatches: 15, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
45 90 1.00
ACGTcount: A:0.02, C:0.38, G:0.09, T:0.51
Consensus pattern (45 bp):
CTCGTCCTCCTTCTTTTCGTCGTCCTTCTTTTCATCGTCCTTCTT
Left flanking sequence: Indices 92565 -- 93064
GTCTTGGGGGTGTTGTTGAGCAAGTCGTAGTACAGCCACACCACAATGGTGTCAAACGTCAAGAA
CCCCAACATCGCCAACAAGTACCGCTGCAACGGCAAGATCTGGTTCTGCTTCCTCTTCTTCCAGA
ACTGGAACCCGTAGAGAGCAAAGATGACGGCGTACAACACCGCCATGATCCCGTACGCAGGCAAC
TTGGGCACCTCACTGGCAGAGAGGTAGCCGAACGCGTTCTGGAACAGCACCTGGCCCTTGTAGTG
GCGCTGGTGCATCAGCACCGTCAGCACGCAGTAGTAGCCGGTACGGGTGATGTTGTACTCGATCT
GGGCACGGCCCAACCGGTCCATCTTGGCGGTGAAGATCGTCAGGTTCTTGTGGGGGGTGTACAAG
TATGTACCAAACTGGTCCTTGGTGCAGAGTTTGTGCAAAATGGCGTCATTGTCGCAGATGTACTG
GCGCTTGGGAGCGTGGGCGTCCTTCCGCTTCTCCTTGGTGTTTTC
Right flanking sequence: Indices 93215 -- 93714
GGCGTCCTCCTTGGCTTGATCGTTGGCGCCCTTCACCAAGTCGTTGGGCTGATCCTCGTCACCGC
CCGCCACCTTGTCGCCCTCAACTCGACCAATGAACTCCAAGTCGCGGTACTCAAAGATGATGTAA
GAGATATCGACATCCGACACCGGACGGGGCGTTTCCTTGCCGTTCCACTTCTTGTTCTCAAACTG
GGTGATCTCAAATTTGATGCTAGGGTTTTTCAGTCCCCCCCAGTCTTCCTTCAGGTACACACCGG
CACACACCATCGACTTGTCCTTGTCGAACTTGACGGTGTTGGCCTGCGCACCCGCCAACAAACCG
GCGCAAACCAATGGTATTAGCATTCGCATTGGGGCAGTGGTTTTCTCGGTAGTGATCAATCGGTT
TTTCAATCAATTGCCGCAAAAGTGCGTGGTACGTGGTCGCACCGACAAAGTGCGGGATTTGGGGC
AGTTCGAGCAGAAACCCGGCAAACGCCACAATAGAACAGTGCTCA
Found at i:94448 original size:12 final size:12
Alignment explanation
Indices: 94431--94461 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
94421 AGCGATCTGA
94431 ACTGTTTTCGTG
1 ACTGTTTTCGTG
94443 ACTGTTTTCGTG
1 ACTGTTTTCGTG
94455 ACTGTTT
1 ACTGTTT
94462 CACGACTTTC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.10, C:0.16, G:0.23, T:0.52
Consensus pattern (12 bp):
ACTGTTTTCGTG
Left flanking sequence: Indices 93931 -- 94430
GCGCTCGTGAAGCTCTTGGCGCTGTATGTGCACGAGTTTTCGTATGCAGATCAGATAGATAACGA
GACTTGATGTTTGTGGGGTAACGCCCATCACGCTTGAACTTCCAGCTACACTCGAAAAAGACTTG
TGCATGCCACCACGCCATACTGTCCCGTTTTCGCTGACCCCTCGGTACCTGCTTTATATGCTTAT
CCCCACGGGTATGCACCTGCACACATCTGATGCGTACCACTTGGCTGCAAACGCTAAGTTAAGAG
AGAAACGACCAAGCAAGTGGAGAGGAAGAGGTCATCAGCAGAGTACCCGCCTTTTATTGTAAGGA
AGCTGGTACATTTTACTGCGGTCCGACCACCGCAGTGATTGTCTGGTGGCCCCACCAGAAATAGA
TTAGTACACTAGTCTGCCGCCTACTAAACTCGTTAGTAGATACCGATTGTGGTTAGTGTGGTCTA
AGTGTAGACTAGCTGTCAAGAACCTAGAAAGCAGCAGCGATCTGA
Right flanking sequence: Indices 94462 -- 94961
CACGACTTTCCACGTTGCGTTGCAATTACTTGTGGTTCAGCGGTCACAGAACCGGCACTAGTGGT
TTGTTTGCCATATAAGTAGCCGTGGATTTCTGCCAGTTTACTTCATTGTTTCCCAATGAACAGCT
CCCAGAACCTTAACGGAGGCGAGCCAGCAAGCGTCCCTTTGCGTGAATCGGTTAATGTCCGCCCT
ATCGTGGGTCGTAACTTTGATGAAATGCCCGTACAGGAGGCCTCTTTTGCCAACCTCCCTGACTT
TGAGGATCTGCTGAACGCCACACGGGTGACTAATACCGTGGAGGCCTGGGACGCAATGGCTGCTG
AGGCTGGTTTCAATGAGCTTGACCGGGAAGCGTTCTCTTCCTTGGTATTGAAGATGTCGATCGGC
CTTTGGAATCTTCGGGGCGACGAGTTTAATAATCTTTATTTCTACTTCGATGGCAACGCTTACGC
ATACTTCAAGGAAGGTGATTGGCGTTTGATCGTGACATTGGACAG
Found at i:136166 original size:31 final size:31
Alignment explanation
Indices: 136131--136189 Score: 102
Period size: 31 Copynumber: 1.9 Consensus size: 31
136121 AATAGGGATA
136131 GAGGTAAGATAG-AGAATAGAGAATAGAGGTT
1 GAGGTAAGATAGCAG-ATAGAGAATAGAGGTT
136162 GAGGTAAGATAGCAGATAGAGAATAGAG
1 GAGGTAAGATAGCAGATAGAGAATAGAG
136190 TTTAAGGAGT
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
31 25 0.93
32 2 0.07
ACGTcount: A:0.46, C:0.02, G:0.36, T:0.17
Consensus pattern (31 bp):
GAGGTAAGATAGCAGATAGAGAATAGAGGTT
Left flanking sequence: Indices 135631 -- 136130
CGATTGACTACGGGCGTAAGGTGTTGCCCGATCCGGACGACGTCCAGGTGTGGACCACCGACATT
GCGGTGCCTATTCTGCGGTTGGCGCAGGTGATCGACGAGACGGACGCGGACTTGAAGGTGGAGTT
CCCGAAGAAGGTGTCGGTGATGGGCCACATTGGCGATGGCAACTGCCATTTTTTGATTGTCTACA
ACACCCCCGAACACGCCAAGGCGCTGGCGGCCGTGGACCGCATGGTGGCCCGGGCGCTTAAGTAC
GAGGGAACGTGTACTGGTGAGCACGGGGTAGGGGTGGGCAAGCGCAAGTACTTGCCCGTGGAGTA
CGGTGAACCTGCCATGGGGTTGATGCGGGCGCTCAAGGTGGGCCTTGACAAGCGGCGTATCTTGA
ACCCGGACAAGATTGTTACGATTGATCCAGAAGATGATTTGGACGCGCAGTTGGATGGTCATAAG
GACTGGGGCTGCTGTCAGTAGACGGACAGTGATGGAATAGGGATA
Right flanking sequence: Indices 136190 -- 136689
TTTAAGGAGTGTAGAGGAATAAAGCGACAAGAACAGCAAAAAGACAGAAAGAGATAGAGTTAATA
ATCGTAATGAGTGTAGTGGACAAAGTGACCGGAGATTTTATGGAAGAAACAATTCAGAGAGAATA
AATTAGTTGTTAACTGGATGACTATGATTTTATCTCCCGTAAAACATCACTTTTACAACTCATTA
GGGTCGAGTCCGACAGGAACCAAAAGATCCACGTCTCAATGATTTTTCAGCAAACCCAATTACAG
ACCCGTCGCCTGCCCGCGATCAACCCCACTGAAATTTCTTTTTTAGGCCGTTTTTTTCTGTTGGA
AAAGAAATCTCCACACTTCCACAGTAGCGGCGGACACCGGACCCGATCCCACGCTTGGAACCCAC
CAGAGGCCCACCAAACCACGCCCACCCCCTTTAAAACCCTTATCGGCCACCCCCACCACCTCTCA
CACCCCCGTAGCACCCCCCACGGCTTACACCGACCTCTCCACACT
Found at i:138650 original size:15 final size:15
Alignment explanation
Indices: 138630--138659 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
138620 GAGTGGTTCA
*
138630 AGGAGGAGCCCAAGG
1 AGGAGGAGACCAAGG
138645 AGGAGGAGACCAAGG
1 AGGAGGAGACCAAGG
138660 CCGACGCCGA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.37, C:0.17, G:0.47, T:0.00
Consensus pattern (15 bp):
AGGAGGAGACCAAGG
Left flanking sequence: Indices 138130 -- 138629
CAACGGGCGTGCCGGCGGGTTGTTCCAGGCGCAGTTGGTGTCTGCGTTGGCCCCGCCCACCACCG
TGGACGCTGCTGACGTGGTGGTGGTGGACGACGTGTCGGTGTTGAACGCGTTTGACGTGTTGGCC
ACTGCCAAGCCCGGCCTGACCATCATTGTCGGCGTGTCCAAGAACGCCGACACCGTGGTGGACAA
GTTGCCGCTTGACTTCAAGAAGGGGTTGGTGGCCAACCACAACGCGTTGGTGGTGGTGGACTTCA
GCGTCGTTGACGCCTTGGACAAGGTGGACGACCTGACCAAGGGGTTCTCTGCCGACTTCTTGTTG
CAGTTGGCGTTCTGGAGAGCCGCCCTCCCCGAGTTGGACGGGTTGATTGTCAACAAGCTTTTGCA
GGCCAACGGCAACGGGTTTGAGTTGTTGGCTGCGGTGTTGGACAAGTTCGTGGCCCTGGTGGACG
AGCACAACGCGTTGATCAAGGTGGAGCCCTCGCCCGAGTGGTTCA
Right flanking sequence: Indices 138660 -- 139159
CCGACGCCGAGGAGAAGGCGGAGGACGAGGAAGAAGAGGCCGAGCCTCTTCCCTTCTTCCCCGCG
GAGACCGCGTTCGCCGCCAACCCCCGGATTGGCGGTGGTGAGGACGCCGAGGAGGTGTTCACTGC
TCCCACCCTGGCGCTCGCCAAGCGCATCGCCTTCCCCGAGGCGTTTGGCACCGCCCAGGCGTTGC
GTCCCGACTTGCCCGTCAAGAACTTTGTCGTCAAGGTCCAGGAGAACAAGCGTCTTACTCCCGCC
GAGTACCTGCGTAACATTTTCCACATTGAGTTTGACACCACCGGCACCGGTCTCAAGTACGAGAT
TGGTGAGGCGCTTGGTATCCATGCGCGCAACCCGGCGGCCGCTGTGGACTCGTTCCTCGAGTTCT
ACGGCGTGGACGGCAACTCGGTGGTCGAGGTCACCCACAAGGACGACCCCACGCTCTTTGAGGTG
CGGTCTGCCCGCCAGGCGCTCACCGAGAACGTCGACTTCTTGGGC
Found at i:144499 original size:9 final size:9
Alignment explanation
Indices: 144487--144512 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
144477 TCGTCGTCGT
144487 CCTCGGGCG
1 CCTCGGGCG
144496 CCTCGGGCG
1 CCTCGGGCG
144505 CCTCGGGC
1 CCTCGGGC
144513 ATCTTCGAGT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.00, C:0.46, G:0.42, T:0.12
Consensus pattern (9 bp):
CCTCGGGCG
Left flanking sequence: Indices 143987 -- 144486
ACGGTGATCGTGATCAGATAAGAGAAGCGATCCGATTCGATGGGACGGTCTACACGAATCGAGTA
GATGGGTGTTGGGTAGTGTTGCTTAGCGTTGGATAGTGTTGAATGATGTTGAATGCATTGATAGC
AGAGTGGTGTTTGAGCCACGGATGAGGGTGGTGAATGATGTCGCGGCTTATCACTCAATAGTTTA
AAATAGTCTCCGAGGTGATGGGTTTATCGGTTGCCAAATATGGAAGTAATAGAGCGGTGTAGTGA
CCCGTCACTGAACCTTCTTGACACCGTTCGCTGGCACAACCCAGAATAATAATTGTATTATGCCT
TTCTAACCGCTACACAGACCCTTATCTCTATACTTCTATCAACCACGTTTCAAGGCAGCGAACCG
CGCCTTCAACGCATCGAACTCATCGACAGGCTTGGCAGGCGCCGCCGGCGACACCCCCTCGGCTT
CCACGGGCATCTCCTTAGCCCCCCCGTCGTCGCCTTCGTCGTCGT
Right flanking sequence: Indices 144513 -- 145012
ATCTTCGAGTACGGCGCGTTGTACGCCCGGGCAATCTCGCACAAGTACAAAGTGACCAAGTCCTC
GGTGGGGACCGGAACGTGGCACCGCGACACAATCTTGTCCGGGACCCTGCCGTCGGTGTTTTCGG
CGGCCGCCCGGGCAAACTCGGGCCCGTACTTTGCAGCAAGCATGTCGCGGATGGTGGCCAACTCC
TTGAGCTCGGAGAACAGCGCGGCGTAGATCACCAGGTCCACGGCCTCGCGGATGTTTTCGTCACA
CTCGGGGAGGGCTGGGTCGGTGATGAGGGAGATGCGAGCCAAGAGGAGCTCGCAATACAACTCGA
GGTACTCAAGCAACTCGACATAGATGTCGTCGCGGATGATGTTTTCCACCCGGATGGTGGCACTG
GTCTCCTTGCCCTGGCCCAACAAGTCCGCCAATTGCCGGCGCTGCTGCTTGGCAAGCGCGGCCTT
CTTTTCCTGGACAAACTGGGCCCGCGAGATGGCCATCTTGAGCGA
Found at i:147373 original size:16 final size:16
Alignment explanation
Indices: 147352--147391 Score: 71
Period size: 16 Copynumber: 2.5 Consensus size: 16
147342 GGGACTCCAG
147352 CCGCGTCTGTAACACT
1 CCGCGTCTGTAACACT
*
147368 CCGCGTCTGTGACACT
1 CCGCGTCTGTAACACT
147384 CCGCGTCT
1 CCGCGTCT
147392 ACAAAACAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.12, C:0.40, G:0.23, T:0.25
Consensus pattern (16 bp):
CCGCGTCTGTAACACT
Left flanking sequence: Indices 146852 -- 147351
CCGAGCGTGGGATCTCGCGGCGCTCAACGTCGGCGGCCATGTGCGCTGTGTGCGTACGCTCGAGG
GCCACCAAGGCTTTGTCAATGGCTCTGACTTTGCCCGGGCGACCGTGGAGCCGGTTGTTCCCGAG
GCAGGCGAGAAGGAGGAGGCCACCGACAAACGGAAGCTCGAGGCTGTGGCCAAGAAGATGCGGTG
TCTCTTTGTGTCGTGCGGTGTCGACAACCTGGTGCGGTTGTGGTCGTAGTGAGCTGAGGTTCTGG
TTTAATTCTTTGCGATACCCTCCATTCAGACACTATTCACCCCTGGGCCACCTTACATTACCTCA
CAACTATCCCACAACGTATCCACGTCCATCCCAGTCATCGCTGTCACGCTCCGAGCGTCTACAAA
ACCACAGTCGCACTTGCTGTACTCCGCATCTATTAAACTTCAGTCGCGCTTGTTACACCTCGCAC
CTAAGACTCCAGTCGCGTTATGTTACTCTCCAAAGGGGACTCCAG
Right flanking sequence: Indices 147392 -- 147891
ACAAAACAATCGCGCACTGTTGACTATACTGTATTACTCGCGTCTCCTTACTCGTGTCTATAGCC
GCATTTGCTAGCTCACTACATCGCTACACTTCTCGTACTATGATTGTATTGTAGATACCTAGGCA
CCCATGCATTAAACCACCACATCAAACGGCTCCCCGTCCACGCGGCCACCCCGCATCGACGTGGT
CACGTTGTCAGCAAACTTCTGCGTCGACCGCACTAATACGTTGGCCGCGTCCTTGTTCAAGGGGT
CGTTGGGGTTGGGCTCCAAAAACAAAAAGTTTAACCCAATGATCACCGCGTTCAAACTGAGCGCC
GGCGACCAGTCGCTGCGGAGAATGTTCAAGCACACGTTGCCCTCGATGTCGATGTTGGGGTGGTA
GATCTTGTTGTCACACTTGATCTTGGGCGGGTCGATGGGGAAGTTGGGCGAGATCTCCACCGTGA
AATGGAAGGTGCCCGCCTTGTAGTAGCCCGTTTGCGGCTTGATTG
Done.